TransTermHP v2.07 (built on Jan 21 2009) 25 bins; sample size is 20000000 --pval-conf=/fs/szasmg2/carlk/TTupdate2/expterm.dat --gc=-2.3 --au=-0.9 --gu=1.3 --mm=3.5 --gap=6 --max-len=59 --min-stem=4 --max-loop=13 --min-loop=3 --uwin-length=6 --uwin-require=3 --max-hp-score=-2 --max-tail-score=-2.5 --loop-penalty=1,2,3,4,5,6,7,8,9,10,11 --start-cut=0 --end-cut=25 Genes: 0.715872 %AT, 3084112 nt, 15091 terms. Intergenic: 0.762863 %AT, H2T: 590452 nt, 5757 terms; T2T: 99472 nt, 2659 terms; H2H: 120842 nt, 2609 terms. Each terminator entry starts in column 3 and is of the form: term # start - end +/- regionconf hp tail | notes Followed by the sequence of the 5' tail, 5' stem, loop, 3' stem, and 3' tail. Genes are interspersed, and start the first column. SEQUENCE gi|187932320|ref|NC_010674.1| Clostridium botulinum B str. Eklund 17B, complete genome (length 3800327) dnaA 175 - 1545 + | chromosomal replication initiator protein DnaA dnaN 1806 - 2906 + | DNA polymerase III, beta subunit yaaA 2945 - 3151 + | S4 domain protein YaaA CLL_A0004 3223 - 4308 + | DNA replication and repair protein RecF CLL_A0005 4323 - 4583 + | hypothetical protein gyrB 4619 - 6526 + | DNA gyrase, B subunit TERM 1 6588 - 6571 - g 78 -5.7 -4.93547 | TTAATGAAGGAAAAA TTATATC TGTA GATATAA AAAATGAAATGAAAA gyrA 6549 - 9098 + | DNA gyrase, A subunit TERM 2 9129 - 9158 + F 90 -5.8 -5.8901 | opp_overlap 9129 GATAAAATAAAAAAA CTATGTAGGATT TTAGTT ATTCCTGCATAG TTTTTTGTTTTGTGT TERM 3 9158 - 9129 - f 86 -3.6 -6.14618 | opp_overlap 9129 GATAAAATAAAAAAA CTATGTAGGATT TTAGTT ATTCCTGCATAG TTTTTTGTTTTGTGT TERM 4 9444 - 9433 - f 78 -4.4 -5.53288 | TTCAACTTAAAAAAA CTTG TTGA CAAG AAATAATTTAAGTGA TERM 5 9519 - 9502 - f 81 -5.6 -5.31091 | CACAATAAAACAAAA GTTGAC AAGAAA GTCAAC AATGAAAATTTGGTC TERM 6 11110 - 11091 - f 75 -9.2 -2.65808 | opp_overlap 11094 11097, overlap 11088 11103 AGTCGTAACAAGGTA GCCGTAGG AGAA CCTGCGGC TGGATCACCTCCTTT TERM 7 11218 - 11246 + F 95 -10.5 -3.94 | overlap 11220 ATGTAGATTCTGTTC AATTTTGAAAGAC TAA GTCTTTCAAAATG TTCTTTGAAAATTGC TERM 8 11220 - 11244 + F 100 -13.1 -3.55603 | overlap 11218 GTAGATTCTGTTCAA TTTTGAAAGAC TAA GTCTTTCAAAA TGTTCTTTGAAAATT TERM 9 11641 - 11624 - f 76 -8.5 -3.695 | GGGAAAGAGCCCAAA CCAAAGA TTTA TCTTTGG GGTTGCGGACAGAAC TERM 10 11808 - 11793 - f 81 -10.4 -2.71011 | ACCTTGTGGGAAGCA GGGAGG ACCA CCTCCC AAGGCTAAATACTAC TERM 11 11882 - 11871 - f 75 -7.2 -4.2354 | GAAAGGTGAAAAGAA CCCC GGGA GGGG AGTGAAATAGAACCT TERM 12 12118 - 12108 - f 71 -6.8 -4.15453 | opp_overlap 12111 GAAGCGAGGGTAAAA CCTC GTG GAGG ACCGAACCACGTTGC TERM 13 12707 - 12691 - f 74 -8.7 -3.05343 | CCCACAGGCCGAATA CCTAAGG TTT CCTCAGG AAGGTTCGTCCGCTG TERM 14 14629 - 14609 - f 80 -8.4 -4.20084 | opp_overlap 14609 ACCATTTATTTAAAA GCTATGAA GTTAA TTCATAGC TTTTTTTGTTATAAT TERM 15 14609 - 14629 + F 100 -8.4 -5.89921 | opp_overlap 14609 ACCATTTATTTAAAA GCTATGAA GTTAA TTCATAGC TTTTTTTGTTATAAT CLL_A0014 14679 - 15182 + | hypothetical protein TERM 16 15437 - 15427 - g 80 -5.4 -5.34857 | TTAAATAAAATAAAA GCTA TAA TAGC TGTAAATCATAAAGA CLL_A0015 15223 - 15735 + | transcriptional regulator CLL_A0016 15749 - 17140 + | FAD-dependent oxidoreductase CLL_A0017 17159 - 17395 + | hypothetical protein TERM 17 17639 - 17673 + F 100 -7.9 -5.71712 | overlap 17637 TAGGGTGGCAACGCG GAGTTTTTCGTCCCT TTTAT AGGGGAGAAAGGCTC TTTTTTTATATAAAA serS 17710 - 18987 + | seryl-tRNA synthetase TERM 18 19046 - 19006 - f 100 -12.9 -4.2074 | opp_overlap 19006 19009, overlap 19009 GTTTTAATATATAAA TAATAGTCTACATTAACAT ATT AAGTTGATGTAGACTATTA TTATTTATAAAATTT TERM 19 19006 - 19046 + F 100 -15.1 -4.09551 | opp_overlap 19006 19009, overlap 19009 GTTTTAATATATAAA TAATAGTCTACATTAACAT ATT AAGTTGATGTAGACTATTA TTATTTATAAAATTT TERM 20 19009 - 19043 + F 100 -12.4 -4.15703 | opp_overlap 19006 19009, overlap 19006 TTAATATATAAATAA TAGTCTACATTAACAT ATT AAGTTGATGTAGACTA TTATTATTTATAAAA TERM 21 19043 - 19009 - f 95 -10.2 -4.21954 | opp_overlap 19009 19006, overlap 19006 TTAATATATAAATAA TAGTCTACATTAACAT ATT AAGTTGATGTAGACTA TTATTATTTATAAAA TERM 22 19258 - 19242 - f 72 -8.7 -2.52543 | AGTTGGTTTAAGGCA CCGGTCT TGA AAACCGG CGTGCGTGTGAGCGT TERM 23 19455 - 19434 - f 95 -10.3 -4.07885 | opp_overlap 19434 GATTCTCCGCCAAAA CATCTAGTA TTTT TACTAGATG TTTTTTTATTCTTCA TERM 24 19434 - 19455 + F 100 -10.3 -5.95946 | opp_overlap 19434 GATTCTCCGCCAAAA CATCTAGTA TTTT TACTAGATG TTTTTTTATTCTTCA TERM 25 19763 - 19747 - f 72 -8.7 -2.52543 | AGTTGGTTTAAGGCA CCGGTCT TGA AAACCGG CGTGCGTGTGAGCGT TERM 26 19960 - 19939 - f 100 -11.7 -4.07885 | opp_overlap 19939 GATTCTCCGCCAAAA CACCTAGTA TTTT TACTAGGTG TTTTTTTGTTATATA TERM 27 19939 - 19960 + F 100 -11.7 -5.9218 | opp_overlap 19939 GATTCTCCGCCAAAA CACCTAGTA TTTT TACTAGGTG TTTTTTTGTTATATA TERM 28 20384 - 20371 - g 71 -3.9 -5.17353 | opp_overlap 20363 ATATTGATGAAAAAA TTCAT ATTG ATGAA GATTCAAGTAATGTT CLL_A0023 20244 - 20762 + | GCN5-related N-acetyltransferase TERM 29 21917 - 21907 - g 74 -2.6 -5.61277 | GATAAAAAAATAAAA TTAT TAA ATAA CCCATTAATTATTTT addB 20791 - 24249 + | ATP-dependent nuclease subunit B addA 24275 - 28006 + | recombination helicase AddA TERM 30 28261 - 28212 - T 77 -3.1 -5.72616 | opp_overlap 28215, overlap 28215 ATCTAGATAAAAAAA CAAGTGAGTGTCTTAAATGTA TGGGTAAT TATACTTAAGATACTCACTTT TCTATATTTATTGGG TERM 31 28258 - 28215 - T 72 -4.8 -4.92669 | opp_overlap 28215, overlap 28212 TAGATAAAAAAACAA GTGAGTGTCTTAAATGTA TGGGTAAT TATACTTAAGATACTCAC TTTTCTATATTTATT TERM 32 28215 - 28258 + T 81 -7 -4.77778 | opp_overlap 28215 28212 TAGATAAAAAAACAA GTGAGTGTCTTAAATGTA TGGGTAAT TATACTTAAGATACTCAC TTTTCTATATTTATT CLL_A0026 29439 - 28288 - | ErfK/YbiS/YcfS/YnhG family protein TERM 33 29199 - 29211 + g 75 -3.5 -5.51402 | opp_overlap 29201, overlap 29201 TTAATGTTGTTATAT TATTT GAA AAATA TTTTTTTAAATCTCT CLL_A0027 29595 - 30404 + | hypothetical protein TERM 34 30409 - 30448 + T 100 -12.5 -5.4182 | opp_overlap 30409 ACGGAATGTAATAAA GGATATATCATTAAGTG CTTAAA TGCTTAATGATATATCC TTTTTATTTATAATT TERM 35 30448 - 30409 - T 100 -11.1 -4.25681 | opp_overlap 30409 ACGGAATGTAATAAA GGATATATCATTAAG TGCTTAAATG CTTAATGATATATCC TTTTTATTTATAATT CLL_A0028 31631 - 30462 - | sodium:dicarboxylate symporter family protein TERM 36 31297 - 31316 + g 95 -8.6 -4.89562 | GCCTTAATTGTTTCA GTTGCTAC TAAT GTAGCAGC TTTTATTAGTTTTGG CLL_A0029 31969 - 32865 + | sensory box histidine kinase TERM 37 32932 - 32874 - T 87 -10.4 -3.22077 | gap 1, opp_overlap 32874 32874 32884 32888, overlap 32872 32884 32888 CTTATAAAAATGACA TTTATTAAAATAAATACTTAATATTAT AGAAAA ATAATCTTAAGTATTTATTTT-ATAAA CTTGCTTATTATGGT TERM 38 32874 - 32932 + T 81 -10.4 -2.74845 | gap 1, opp_overlap 32872 32874 32884 32888, overlap 32874 32884 32888 CTTATAAAAATGACA TTTATTAAAATAAATACTTAATATTAT AGAAAA ATAATCTTAAGTATTTATTTT-ATAAA CTTGCTTATTATGGT TERM 39 32923 - 32884 - T 80 -8.3 -4.29738 | opp_overlap 32874 32874 32884 32888, overlap 32872 32874 32888 TGACATTTATTAAAA TAAATACTTAATATTAT AGAAAA ATAATCTTAAGTATTTA TTTTATAAACTTGCT TERM 40 32884 - 32923 + T 82 -8.3 -4.43189 | opp_overlap 32872 32884 32874 32888, overlap 32874 32874 32888 TGACATTTATTAAAA TAAATACTTAATATTAT AGAAAA ATAATCTTAAGTATTTA TTTTATAAACTTGCT TERM 41 32888 - 32919 + T 70 -4.7 -4.77775 | opp_overlap 32872 32888 32884 32874, overlap 32884 32874 ATTTATTAAAATAAA TACTTAATATTAT AGAAAA ATAATCTTAAGTA TTTATTTTATAAACT TERM 42 33087 - 33109 + T 100 -11.4 -4.84492 | opp_overlap 33087 TTTAACAATAAGAAA GGCTTAATCA CTA TGGTTAAGCC TTTTATTATGCTTAA TERM 43 33109 - 33087 - T 93 -9.2 -4.57882 | opp_overlap 33087 TTTAACAATAAGAAA GGCTTAATCA CTA TGGTTAAGCC TTTTATTATGCTTAA CLL_A0031 34345 - 33191 - | DNA integration/recombination/invertion protein CLL_A0032 34930 - 34346 - | adenine-specific DNA methyltransferase CLL_A0033 35125 - 35451 + | putative viral A-type inclusion protein CLL_A0034 35747 - 37507 + | hypothetical protein TERM 44 37655 - 37631 - f 86 -3.6 -6.04419 | opp_overlap 37653, overlap 37652 AAAAGAACAAAAAAA GTAGCATTTC AAAAA GAAACACCAC TAACACTCGCAATGT CLL_A0035 37765 - 38001 + | hypothetical protein TERM 45 38034 - 38016 - f 100 -14.6 -3.09759 | overlap 38007 AATATATTTATTTAA GGTGTCCG AAT CGGACACC AATAGAGAAAAGGTG CLL_A0036 38124 - 38354 + | hypothetical protein CLL_A0037 38370 - 38522 + | hypothetical protein TERM 46 38625 - 38682 + F 86 -9.5 -3.92673 | gap 1, overlap 38625 ATTAAGAATTTAATG GCTGCGGGAAATATTTAATAAAATCATT ATT GATGGTTTTGTTACTTA-TTCCCGTAGC CTTTTTATTTTGTAT TERM 47 38625 - 38683 + F 73 -3.5 -5.58522 | overlap 38625 ATTAAGAATTTAATG -GCTGCGGGAAATATTTAATAAAATCATT ATT GATGGTTTTGTTACTTA-TTCCCGTAGCC TTTTTATTTTGTATA CLL_A0038 38712 - 39938 + | phage portal protein CLL_A0039 39901 - 40458 + | phage prohead protease, HK97 family TERM 48 40444 - 40434 - f 70 -4 -5.21459 | AAAAATAAAAATAAA TCAA ATA TTGA AAGGAAGTATTTAAG CLL_A0040 40460 - 41686 + | phage major capsid protein, HK97 family CLL_A0041 41862 - 42122 + | putative DNA packaging protein TERM 49 42116 - 42106 - f 74 -8.2 -3.40907 | TTATAGCAACATTAA CGCC AAT GGCG AGGTGATGTTATGGT CLL_A0042 42127 - 42669 + | prophage LambdaBa02, site-specific recombinase, phage integrase family CLL_A0043 42839 - 43150 + | prophage LambdaBa04, Gp54 CLL_A0044 43250 - 43594 + | hypothetical protein CLL_A0045 43594 - 45234 + | putative phage terminase, large subunit CLL_A0046 45277 - 45594 + | putative phage head-tail adaptor CLL_A0047 45612 - 46313 + | RNA polymerase sigma-F factor TERM 50 46585 - 46574 - g 70 -3 -5.25805 | AAGAAAGTTAAAAAA GTTA TATC TAAC AATAGGAAGACTGCT CLL_A0048 46314 - 46652 + | sigma-70, region 4 family TERM 51 46870 - 46847 - f 100 -11.2 -4.07885 | opp_overlap 46847 CACGCTCTGCCAAAA GACTTAACTA TTTT TAGTTAAGTC TTTTTTTATTATATA TERM 52 46847 - 46870 + F 100 -11.2 -5.9218 | opp_overlap 46847 CACGCTCTGCCAAAA GACTTAACTA TTTT TAGTTAAGTC TTTTTTTATTATATA TERM 53 47313 - 47295 - g 77 -6.2 -4.65182 | opp_overlap 47291 47298, overlap 47291 TATAAATGAAATAAA TAATTTAT TAA ATAAATTA GATATAGAAAAAACT CLL_A0049 47083 - 48222 + | hypothetical protein TERM 54 48212 - 48261 + T 100 -11.3 -5.14682 | gap 1, opp_overlap 48220, overlap 48220 48223 AATTAAAAAAGGTGA TTAA-TAAATAATAGAGAGAAATT TTA AATTTCTCTCTATTATTAGGTTAA TTTTGTTTATTATAA TERM 55 48252 - 48220 - T 100 -16.7 -4.25458 | opp_overlap 48220 48212 48223 AAGGTGATTAATAAA TAATAGAGAGAAATT TTA AATTTCTCTCTATTA TTAGGTTAATTTTGT TERM 56 48220 - 48252 + T 100 -16.7 -3.29386 | opp_overlap 48220, overlap 48212 48223 AAGGTGATTAATAAA TAATAGAGAGAAATT TTA AATTTCTCTCTATTA TTAGGTTAATTTTGT TERM 57 48223 - 48249 + T 100 -14 -3.762 | opp_overlap 48220, overlap 48220 48212 GTGATTAATAAATAA TAGAGAGAAATT TTA AATTTCTCTCTA TTATTAGGTTAATTT TERM 58 48302 - 48286 - T 73 -6.7 -4.26189 | opp_overlap 48274 48262 TTATAAATTTGAAAA GTTTATT TAT AATAAAC GAAATTCTTGCAACA psd 49253 - 48363 - | phosphatidylserine decarboxylase TERM 59 49445 - 49456 + G 73 -4.4 -5.03314 | overlap 49443 AATTGATTTTTAATT CTTC AATA GAAG TTTTTTCAAAATCAG CLL_A0051 49414 - 49989 + | transcriptional regulator, TetR family TERM 60 50079 - 50027 - f 100 -25.5 -4.02075 | opp_overlap 50032, overlap 50032 TAAATATTAATTAAA TAAAACAAGTAAGCCTATCTTAAAA GTT TTTTAGGATAGGCTTACTTGTTTTA ATAAAAAAATTCAAC TERM 61 50032 - 50074 + F 100 -23.2 -4.25283 | opp_overlap 50027 50032 ATTAATTAAATAAAA CAAGTAAGCCTATCTTAAAA GTT TTTTAGGATAGGCTTACTTG TTTTAATAAAAAAAT TERM 62 50074 - 50032 - f 100 -21 -5.00851 | opp_overlap 50032, overlap 50027 ATTAATTAAATAAAA CAAGTAAGCCTATCTTAAAA GTT TTTTAGGATAGGCTTACTTG TTTTAATAAAAAAAT TERM 63 50192 - 50174 - f 70 -7.6 -3.44825 | opp_overlap 50174 50173 50171 50176 AAAACTATTAATTAA TACTTATT TTT AATAAGTA ATTATGTTAAAATTG CLL_A0052 50301 - 52031 + | hydrogenase-1 TERM 64 52134 - 52114 - f 100 -11.3 -4.39568 | opp_overlap 52112 ATGCATATATTAAAA CTATGCTAA AAT TTAGCATAG ACTCTATAAATATAT CLL_A0053 52291 - 53079 + | HAD-superfamily hydrolase TERM 65 53121 - 53099 - T 88 -8.5 -4.82998 | opp_overlap 53099 53117, overlap 53117 TTAAATCAAAATAAA GGCTATTCC TTAGT GAAATAGCC TTTTAGCCTAATTAT CLL_A0054 54728 - 53133 - | ABC transporter, ATP-binding protein TERM 66 55072 - 55050 - H 79 -8.5 -4.18506 | overlap 55051 TTATTCTCAAAATAA CCCACATAG ATAAG CTATGTGGA AGTAGAGTATTTAGT TERM 67 55071 - 55051 - H 82 -9.8 -3.10622 | overlap 55050 TATTCTCAAAATAAC CCACATAG ATAAG CTATGTGG AAGTAGAGTATTTAG TERM 68 55119 - 55099 - H 93 -12.7 -3.07113 | opp_overlap 55099 TAGTATTGTAGGCAA CCACATAGT AAC ACTATGTGG TTTTTTTATTCTTTG TERM 69 55099 - 55119 + H 100 -12.7 -6.01369 | opp_overlap 55099 TAGTATTGTAGGCAA CCACATAGT AAC ACTATGTGG TTTTTTTATTCTTTG CLL_A0055 55218 - 56531 + | sodium:neurotransmitter symporter family protein TERM 70 56609 - 56571 - T 73 -7 -4.02736 | gap 1, opp_overlap 56576, overlap 56576 AACTTATATGATAAA TAAAAGCACTACCATTT TTAGTT AAATGG-AGTGCTTTTT TCATTTGTTTTAAAA TERM 71 56576 - 56604 + T 88 -6.9 -5.48163 | gap 1, opp_overlap 56571 56576 ATATGATAAATAAAA GCACTACCATTT TTAGTT AAATGG-AGTGC TTTTTTCATTTGTTT TERM 72 56604 - 56576 - T 80 -6.9 -5.03227 | gap 1, opp_overlap 56576, overlap 56571 ATATGATAAATAAAA GCACTACCATTT TTAGTT AAATGG-AGTGC TTTTTTCATTTGTTT CLL_A0056 57311 - 56664 - | hemolysin-3 TERM 73 56738 - 56723 - G 72 -6.2 -4.33105 | CAAGCATTATGAAAA CATGAA ATAT TTCATG AGATCCAAAAACGCC CLL_A0057 57530 - 58111 + | hypothetical protein CLL_A0058 58112 - 59812 + | isopentenyl-diphosphate delta-isomerase TERM 74 60044 - 60026 - g 73 -5.4 -4.65916 | opp_overlap 60026 TGTAGTTGAAGAAAA TTTTATAG AAT CCATAAAA TTACCTGAGACTATG CLL_A0059 59901 - 60419 + | putative lipoprotein TERM 75 60488 - 60451 - T 78 -5.7 -5.27206 | opp_overlap 60453, overlap 60453 TATATAGAATAAAAA TAGCAATAGAATGATTT ATGA ACAACATTCTATTGCTT AATTTTTTATTATAA TERM 76 60486 - 60453 - T 80 -8.3 -4.24787 | opp_overlap 60453, overlap 60451 TATAGAATAAAAATA GCAATAGAATGATTT ATGA ACAACATTCTATTGC TTAATTTTTTATTAT TERM 77 60453 - 60486 + T 79 -8.3 -4.05512 | opp_overlap 60453 60451 TATAGAATAAAAATA GCAATAGAATGATTT ATGA ACAACATTCTATTGC TTAATTTTTTATTAT TERM 78 60610 - 60637 + T 75 -9.3 -2.53112 | opp_overlap 60610, overlap 60609 TTATATTGGGAGCAA GCTAAAATGGG ACTATA CTCATTTTAGC ATTCCTAAGTTCAAT CLL_A0060 62047 - 60692 - | membrane protein TERM 79 60936 - 60964 + g 79 -8.9 -3.45776 | opp_overlap 60931 60945 AAACCAACAACTAAT GTTTTAGAAGCTG CAA CAGCTTCAGGAAC TTGTAATAACTTTAG TERM 80 63398 - 63388 - g 76 -4 -5.4659 | TAAGATAAATAAAAA TACT GAG AGTA CTAAAAAAGCTGATG TERM 81 63921 - 63896 - g 87 -11.2 -2.63688 | overlap 63893 63892 63900 ATCCAAATGAATTCA GCAACAGCTG AGGAGA CAGCTGCTGC AACACAAGAATTAGC CLL_A0061 62297 - 63991 + | methyl-accepting chemotaxis sensory transducer TERM 82 64157 - 64173 + F 100 -7.9 -5.27938 | opp_overlap 64157 64159, overlap 64159 ATCTGAACTAAAAAA GTGTGGC ATA GCCACTC TTTTTCTTTAGAAAT TERM 83 64173 - 64157 - f 100 -7.9 -5.27477 | opp_overlap 64157 64159, overlap 64159 ATCTGAACTAAAAAA GTGTGGC ATA GCCACTC TTTTTCTTTAGAAAT TERM 84 64159 - 64171 + F 84 -9.1 -4.27026 | opp_overlap 64159 64157, overlap 64157 CTGAACTAAAAAAGT GTGGC ATA GCCAC TCTTTTTCTTTAGAA TERM 85 64171 - 64159 - f 73 -9.1 -2.84518 | opp_overlap 64157 64159, overlap 64157 CTGAACTAAAAAAGT GTGGC ATA GCCAC TCTTTTTCTTTAGAA proB 64352 - 65161 + | glutamate 5-kinase proA 65176 - 66420 + | glutamate-5-semialdehyde dehydrogenase TERM 86 66892 - 66882 - g 76 -4 -5.50499 | TTATATGTAAAAAAA CTTT ATG AAAG TGTGGGATTTAAGAT CLL_A0064 66522 - 66962 + | acetyltransferase CLL_A0065 67148 - 67654 + | bacterial membrane flanked domain family TERM 87 68910 - 68894 - g 74 -2.3 -5.64873 | overlap 68896 GGGAAGAACAAAAAA TACTTAT ATA ATAAGAA AATTTAAGGTGCAAT CLL_A0066 67845 - 69062 + | bacterial membrane flanked domain family TERM 88 69101 - 69072 - f 100 -10.3 -4.41353 | gap 1, opp_overlap 69072 69081 TTATAGATATGAAAA TGTGCAGATTATTA TAA TAA-AATCTGCACA TTTTTTATTATAATA TERM 89 69072 - 69101 + F 100 -10.3 -5.58179 | gap 1, opp_overlap 69072, overlap 69081 TTATAGATATGAAAA TGTGCAGATTATTA TAA TAA-AATCTGCACA TTTTTTATTATAATA CLL_A0067 69289 - 70059 + | short chain dehydrogenase CLL_A0068 70216 - 71028 + | HAD superfamily hydrolase CLL_A0069 71127 - 72584 + | methyl-accepting chemotaxis protein TERM 90 72856 - 72898 + F 87 -7.1 -5.23292 | TTGATAAATATGTGT GGATAGTAAAGAGACCTCT TTTAT GGTTGTCTCTTTAGTATCC TTTTATTTTATATAA carA 72952 - 74001 + | carbamoyl-phosphate synthase, small subunit TERM 91 74971 - 74952 - g 71 -8.6 -2.87051 | overlap 74951 GCTTTAGCATCAAAG GCAACAGG ATAT CCTATTGC AAAGCTTGCAGCTAA carB 74016 - 77225 + | carbamoyl-phosphate synthase, large subunit TERM 92 77240 - 77262 + T 100 -7.9 -6.02345 | opp_overlap 77240 AGTATAAATAAAAAA TGTTACAAT TAATT ATTGTAACA TTTTTTTTATGCTTC TERM 93 77262 - 77240 - T 100 -7.9 -5.73978 | opp_overlap 77240 AGTATAAATAAAAAA TGTTACAAT TAATT ATTGTAACA TTTTTTTTATGCTTC CLL_A0072 78378 - 77269 - | HD-GYP hydrolase domain containing protein TERM 94 77999 - 78024 + g 84 -9.3 -3.62775 | opp_overlap 77998 78014 GAAATTAACAAATTT TTATTAGATAA TATA TTATCTAATAA TTCTTCAGAGATAGT TERM 95 78079 - 78094 + g 77 -7.6 -4.10657 | opp_overlap 78079 78058 TTCATGTTTTGAATA GTTCTC AATT GAGAAC TTTTCAAAGCTATGA TERM 96 78565 - 78536 - R 100 -7.9 -5.45652 | opp_overlap 78536 ACCTGCAATAAAAAA TGGGAGAAAAAGC TAAA ACTTCATCTCCCA TTTTTATTTATAGAA TERM 97 78536 - 78565 + r 77 -5 -5.38054 | opp_overlap 78536 ACCTGCAATAAAAAA TGGGAGAAAAAG CTAAAA CTTCATCTCCCA TTTTTATTTATAGAA CLL_A0073 80563 - 78671 - | glutamine synthetase TERM 98 81174 - 81156 - g 88 -9 -4.52266 | AAGTAAATATGAAAA TATTCCTA TTA TAGGAATA GAACCAGCATTAAAA murI 80881 - 81657 + | glutamate racemase TERM 99 81753 - 81731 - f 73 -8 -3.75051 | opp_overlap 81731 81750, overlap 81729 81750 CACTAAGTGAAAATA TATATTTATA TTA TATAAATATA TTAAATATATTAAAT CLL_A0075 81796 - 82320 + | peptidyl-prolyl cis-trans isomerase CLL_A0076 82501 - 82869 + | hypothetical protein TERM 100 83123 - 83112 - g 73 -3 -5.41746 | AAGCTTTCAAAAAAA TAGT TAAC ACTA AGGCAGAAAAATCAG CLL_A0077 82871 - 83539 + | DNA-binding protein TERM 101 83549 - 83578 + F 93 -6.6 -5.86965 | opp_overlap 83549 TTGTAGTTTTATTAA GTAGTTGTATAC ATAAAA GTATATAGCTAC TTTTTTTTGGTCAAT TERM 102 84297 - 84287 - g 72 -6.8 -4.07526 | AATGACGTATATAAA GGTG CAG CACC AGAAGCATCTATAGC CLL_A0078 83639 - 85483 + | CspB CLL_A0079 85553 - 86884 + | spore cortex-lytic enzyme SleC TERM 103 86892 - 86920 + T 100 -16.3 -5.48063 | opp_overlap 86892 TTGTATAGAAAAAAA GAAATGCTTCAAA TAA TTTGAAGCATTTC TTTTTTATATTCCCT TERM 104 86920 - 86892 - T 100 -16.3 -5.71712 | opp_overlap 86892 TTGTATAGAAAAAAA GAAATGCTTCAAA TAA TTTGAAGCATTTC TTTTTTATATTCCCT CLL_A0080 87830 - 86925 - | radical SAM domain protein CLL_A0081 89038 - 87980 - | transporter TERM 105 88380 - 88399 + g 78 -4.4 -5.41359 | gap 1 GCTCCAAGAGTAATT CCTATAAAC ATA GTTT-TAGG TTTTTTCATTTGATT CLL_A0082 89173 - 90243 + | putative lipoprotein CLL_A0083 90336 - 91274 + | radical SAM protein, family CLL_A0084 91275 - 91991 + | probable 2-phosphosulfolactate phosphatase TERM 106 92020 - 91986 - T 82 -8.9 -4.09827 | gap 1, opp_overlap 91987 91997, overlap 91987 91989 91997 GATAAGATAATTAAA CTATAAAAAAAGTGGC ATAA GCCAC-TTTTTTATAA TTTTGTTTTATCAAA TERM 107 92019 - 91987 - T 82 -10.2 -3.04812 | gap 1, opp_overlap 91987 91997, overlap 91986 91989 91997 ATAAGATAATTAAAC TATAAAAAAAGTGGC ATAA GCCAC-TTTTTTATA ATTTTGTTTTATCAA TERM 108 91987 - 92019 + T 90 -10.2 -3.69938 | gap 1, opp_overlap 91987 91986 91989 91997, overlap 91997 ATAAGATAATTAAAC TATAAAAAAAGTGGC ATAA GCCAC-TTTTTTATA ATTTTGTTTTATCAA TERM 109 92019 - 91989 - T 78 -9.3 -3.06538 | gap 1, opp_overlap 91987 91997, overlap 91987 91986 91997 AAGATAATTAAACTA TA-AAAAAAGTGGC ATAA GCCACTTTTTTATA ATTTTGTTTTATCAA TERM 110 92010 - 91997 - T 100 -8.1 -5.75599 | opp_overlap 91987 91997, overlap 91987 91989 91986 TAAACTATAAAAAAA GTGGC ATAA GCCAC TTTTTTATAATTTTG TERM 111 91997 - 92010 + T 100 -8.1 -5.4588 | opp_overlap 91997 91987 91989 91986, overlap 91987 TAAACTATAAAAAAA GTGGC ATAA GCCAC TTTTTTATAATTTTG CLL_A0085 93205 - 92015 - | PUA domain containing protein TERM 112 93364 - 93336 - R 100 -9.1 -5.49809 | opp_overlap 93336 TAAAGCCTAAAAAAA TTATAAACCAG AATAAAA CTGGTTTATAA TTTTTCTTTAAATAT TERM 113 93336 - 93364 + r 100 -9.1 -5.31519 | opp_overlap 93336 TAAAGCCTAAAAAAA TTATAAACCAG AATAAAA CTGGTTTATAA TTTTTCTTTAAATAT CLL_A0086 93852 - 93643 - | hypothetical protein CLL_A0087 94170 - 94853 + | DNA-binding response regulator CLL_A0088 94859 - 96130 + | sensor histidine kinase TERM 114 96208 - 96262 + F 93 -12.9 -3.10112 | gap 2, opp_overlap 96205 96216 96243, overlap 96216 TAAAATAAAATTTTT TAATAAAA-GCAACTATTTAGTT-TGT TAT ATAGAACTAAATAGTTGCTTTTTATTA TTCAGTAAATTGCAT TERM 115 96253 - 96216 - f 100 -10.2 -4.64334 | opp_overlap 96208 96216, overlap 96243 AATTTTTTAATAAAA GCAACTATTTAGTT TGTTATATAG AACTAAATAGTTGC TTTTTATTATTCAGT TERM 116 96216 - 96253 + F 100 -11.7 -5.30348 | gap 1, opp_overlap 96216 96243, overlap 96208 AATTTTTTAATAAAA GCAACTATTTAGTT-TGT TAT ATAGAACTAAATAGTTGC TTTTTATTATTCAGT CLL_A0089 96428 - 97114 + | VTC domain superfamily CLL_A0090 97149 - 97838 + | tubulin/FtsZ, GTPase TERM 117 97856 - 97879 + F 84 -8.8 -4.21408 | opp_overlap 97856 GAGACTCTAAATTTA CCCAGCTGGC GTAT GCAAGTTGGG TTTACTTTTAGAATT TERM 118 98607 - 98594 - g 73 -8.1 -3.38316 | overlap 98602 GGAGGAGGCAATCAA GGTGG AAAT CCACC AAATGGAGGAGAAAG TERM 119 99322 - 99310 - g 70 -7.7 -3.41878 | opp_overlap 99309 CTTTCCAATTGATAA TCCTG TCT CAGGA GATTTATCAAGTATG CLL_A0091 97955 - 100084 + | CotH protein CLL_A0092 100377 - 102356 + | 2', 3'-cyclic nucleotide 2'-phosphodiesterase TERM 120 102448 - 102400 - f 90 -7.1 -5.35354 | gap 1, opp_overlap 102400 TATATAATTAAAAAA CAAGTAAAGTCATAGAG-ATAA TTTAAT TTATTCCCTATTACCTTACTTG TTTTTAAATATATAA TERM 121 103092 - 103111 + F 89 -4.2 -6.10295 | GGTTTGCGATTTTAA CTTCGTCC TGTG GGATGGGG TTTTTTTTATATTAA ileS 103159 - 106287 + | isoleucyl-tRNA synthetase CLL_A0094 106394 - 107392 + | catabolite control protein A TERM 122 107407 - 107460 + F 89 -12.2 -2.91681 | opp_overlap 107413 107416, overlap 107413 AGATATAGTATTCAT TATAAATAAGATGTAATAAAAGCA TTAGAT TGCTTTTATTGCACCTTATTTTTA TATCTAAGATTAGAA TERM 123 107413 - 107454 + F 100 -11.2 -5.03994 | opp_overlap 107413 107416, overlap 107407 AGTATTCATTATAAA TAAGATGTAATAAAAGCA TTAGAT TGCTTTTATTGCACCTTA TTTTTATATCTAAGA TERM 124 107454 - 107413 - f 100 -11.2 -3.98214 | opp_overlap 107413 107407, overlap 107416 AGTATTCATTATAAA TAAGATGTAATAAAAGCA TTAGAT TGCTTTTATTGCACCTTA TTTTTATATCTAAGA TERM 125 107451 - 107416 - f 79 -8.5 -4.11585 | opp_overlap 107413 107407, overlap 107413 ATTCATTATAAATAA GATGTAATAAAAGCA TTAGAT TGCTTTTATTGCACC TTATTTTTATATCTA CLL_A0095 107674 - 108099 + | hypothetical protein CLL_A0096 108224 - 109603 + | mate efflux family protein TERM 126 109648 - 109616 - T 100 -15.1 -4.56358 | opp_overlap 109619 109642, overlap 109619 TAGATTTAGATAAAA TAATCCCACATCTTA AAT TAAGATGTGGGATTT TATTTTTTATAATAT TERM 127 109619 - 109645 + T 100 -16.8 -5.49579 | opp_overlap 109616 109619, overlap 109642 ATTTAGATAAAATAA TCCCACATCTTA AAT TAAGATGTGGGA TTTTATTTTTTATAA TERM 128 109645 - 109619 - T 100 -16.8 -4.38744 | opp_overlap 109619 109642, overlap 109616 ATTTAGATAAAATAA TCCCACATCTTA AAT TAAGATGTGGGA TTTTATTTTTTATAA CLL_A0097 109840 - 109655 - | hypothetical protein CLL_A0098 109950 - 110525 + | hypothetical protein CLL_A0099 110541 - 111068 + | hypothetical protein TERM 129 111383 - 111371 - g 72 -3.5 -5.26875 | TGGCTAATGAAAAAA TTAAT GAA ATTAA ACCGTTAACTAAAGA CLL_A0100 111172 - 111504 + | hypothetical protein TERM 130 112766 - 112747 - g 75 -3.6 -5.41787 | opp_overlap 112747 112746 TAAAAAATATAAAAA TTTCTGTA TTGT TACAGGAA ATATTTTACTTAACA CLL_A0101 111690 - 113300 + | ABC1 family protein kinase TERM 131 113630 - 113652 + F 100 -10.6 -6.01369 | opp_overlap 113630 TTGACTATTTTTAAA CCTTGAGTGT TAA GCACTCGAGG TTTTTTTATTCTTTA TERM 132 113652 - 113630 - f 72 -7.7 -3.58343 | opp_overlap 113630 TTGACTATTTTTAAA CCTTGAGTG TTAAG CACTCGAGG TTTTTTTATTCTTTA TERM 133 113825 - 113846 + F 84 -9.5 -3.78934 | opp_overlap 113819 113817 113829 113830, overlap 113830 AAAAATCGACGGCTC CAAAGTCGC CTTA GCGATTTTG TTCTTATAGCCAGCC TERM 134 113830 - 113841 + F 75 -5.8 -4.95547 | opp_overlap 113819 113817 113830 113829, overlap 113825 TCGACGGCTCCAAAG TCGC CTTA GCGA TTTTGTTCTTATAGC CLL_A0102 113901 - 115619 + | Na+/H+ antiporter family family TERM 135 115718 - 115691 - f 95 -13 -3.49618 | opp_overlap 115691, overlap 115694 TTGTGATATAATTAA TAAGATACCAAT GATA ATTGGTATCTTA TTTTTGTTCTTTAAG TERM 136 115691 - 115718 + F 100 -13 -5.38549 | opp_overlap 115691 115694 TTGTGATATAATTAA TAAGATACCAAT GATA ATTGGTATCTTA TTTTTGTTCTTTAAG TERM 137 115715 - 115694 - f 95 -10.3 -3.88097 | opp_overlap 115691, overlap 115691 TGATATAATTAATAA GATACCAAT GATA ATTGGTATC TTATTTTTGTTCTTT TERM 138 115761 - 115804 + F 73 -8 -3.67296 | gap 1, opp_overlap 115761 ACAAAAGGATAACGA TTTCT-TATTTATATATAG AAATAAA CTATATATAAATAAAGAAA TTTACATAAATAATA CLL_A0103 115847 - 117631 + | Xaa-Pro aminopeptidase 1 TERM 139 117650 - 117683 + T 82 -9.1 -4.08974 | opp_overlap 117650, overlap 117654 TAAATAGTTAAAAAA GAAACTATTAAGTGA ATTT TAACTTAGTAGTTTC TTTATATAATCAGAT TERM 140 117683 - 117650 - T 83 -6.9 -5.18561 | opp_overlap 117650 117654 TAAATAGTTAAAAAA GAAACTATTAAGTGA ATTT TAACTTAGTAGTTTC TTTATATAATCAGAT CLL_A0104 117833 - 117705 - | hypothetical protein CLL_A0105 117841 - 118092 + | hypothetical protein CLL_A0106 118299 - 119702 + | AAA superfamily ATPase with N- receiver domain TERM 141 119800 - 119749 - f 79 -7.2 -4.57581 | gap 2, opp_overlap 119758 119767, overlap 119752 119753 119754 AGTTGAAATAATAAA CAATTGTAATTTTAAGAATAGAAA GTATAT TTTCTATTCTTAAAATCAC--TTG CAATCAACTTTATAA TERM 142 119799 - 119752 - f 82 -8.1 -4.38503 | opp_overlap 119758 119767, overlap 119749 119753 119754 TGAAATAATAAACAA TTGTAATTTTAAGAATAGAAA GTATAT TTTCTATTCTTAAAATCACTT GCAATCAACTTTATA TERM 143 119798 - 119753 - f 93 -11.6 -3.21475 | opp_overlap 119758 119767, overlap 119752 119749 119754 GAAATAATAAACAAT TGTAATTTTAAGAATAGAAA GTATAT TTTCTATTCTTAAAATCACT TGCAATCAACTTTAT TERM 144 119797 - 119754 - f 100 -15.1 -2.51258 | opp_overlap 119758 119767, overlap 119753 119752 119749 AAATAATAAACAATT GTAATTTTAAGAATAGAAA GTATAT TTTCTATTCTTAAAATCAC TTGCAATCAACTTTA TERM 145 119758 - 119793 + F 89 -13 -2.53876 | opp_overlap 119754 119753 119752 119749, overlap 119767 AATAAACAATTGTAA TTTTAAGAATAGAAAG TATA TTTTCTATTCTTAAAA TCACTTGCAATCAAC CLL_A0107 119829 - 120752 + | hydrolase, alpha/beta fold family TERM 146 120821 - 120763 - f 79 -8.6 -4.09656 | opp_overlap 120775, overlap 120765 120766 120768 120775 TCTAAAACAGAATAA TATTATATAAAATAATGGTTATAGGCTT TAA AAGTTTATGACCATTATTTTATATACCA ATAAATAACTAATAA TERM 147 120819 - 120765 - f 79 -9 -3.62611 | opp_overlap 120775, overlap 120763 120766 120768 120775 TAAAACAGAATAATA TTATATAAAATAATGGTTATAGGCTT TAA AAGTTTATGACCATTATTTTATATAC CAATAAATAACTAAT TERM 148 120818 - 120766 - f 89 -12.5 -2.7594 | opp_overlap 120775, overlap 120765 120763 120768 120775 AAAACAGAATAATAT TATATAAAATAATGGTTATAGGCTT TAA AAGTTTATGACCATTATTTTATATA CCAATAAATAACTAA TERM 149 120816 - 120768 - f 82 -10.7 -2.89917 | opp_overlap 120775, overlap 120766 120765 120763 120775 AACAGAATAATATTA TATAAAATAATGGTTATAGGCTT TAA AAGTTTATGACCATTATTTTATA TACCAATAAATAACT TERM 150 120775 - 120809 + F 100 -11 -4.53303 | opp_overlap 120768 120766 120765 120763 120775 TAATATTATATAAAA TAATGGTTATAGGCTT TAA AAGTTTATGACCATTA TTTTATATACCAATA CLL_A0108 121218 - 121922 + | glycerol uptake facilitator protein TERM 151 121984 - 121956 - f 87 -7.4 -5.10163 | opp_overlap 121951 AAGGTTAAAATAAAA GGTCTTGCTGGA TAAAC TCTAGCAAGGCC TAAAACTATATATTT TERM 152 122856 - 122846 - g 74 -4 -5.36181 | AAATAAAAAAATAAA TCAA TTA TTGA AAGATAAAGGAATAA dhaK 122016 - 123014 + | dihydroxyacetone kinase, DhaK subunit CLL_A0110 123105 - 123743 + | dihydroxyacetone kinase, L subunit CLL_A0111 123746 - 124135 + | dihydroxyacetone kinase, phosphotransfer subunit TERM 153 124138 - 124186 + F 95 -8.6 -5.10077 | overlap 124143 TAAGATTTATTAATT AAAAAGCTATATTATATTGAGT TTTTT ATTTGATATAATATAGCTTTTA TTTTTTAAACTATTT TERM 154 124143 - 124181 + F 100 -8.5 -5.42198 | overlap 124138 TTTATTAATTAAAAA GCTATATTATATTGAGT TTTTT ATTTGATATAATATAGC TTTTATTTTTTAAAC TERM 155 124502 - 124466 - f 90 -12.5 -2.9518 | opp_overlap 124467 GGTAACACGTATATA CGTCTCTATATAGGTTT AAT ATACCTATATAGAGACT TTTTTGATTTATAAC TERM 156 124467 - 124501 + F 100 -16 -5.42514 | opp_overlap 124466 GTAACACGTATATAC GTCTCTATATAGGTTT AAT ATACCTATATAGAGAC TTTTTTGATTTATAA TERM 157 124621 - 124605 - f 72 -3.7 -5.42265 | TTAAATCACAAAAAA CAACACC TAG AGTATTG TTTAAAATAAGGAGG TERM 158 125788 - 125772 - g 72 -7.3 -3.92075 | ACTTTGACGGAGAAA TTCAACC ACA GGCTGAA AGTGGAGAATTTGAC metG 124646 - 126583 + | methionyl-tRNA synthetase TERM 159 126627 - 126597 - f 100 -9.1 -5.2894 | AAAGATAAAATAAAA GGAACACCTCA TTTAGGGGG TGAGGTGCTCC GTAACCACTAATATA CLL_A0113 126780 - 127577 + | putative deoxyribonuclease TERM 160 127627 - 127593 - f 70 -7.4 -3.78677 | opp_overlap 127597 127606 127609, overlap 127591 127597 AAATAAGGTAAAATA TTAATTGGAATATTTT TGA AAAATATTCCAATTTT TCATAAGTTTATAAT TERM 161 127623 - 127597 - f 95 -12.6 -3.55453 | opp_overlap 127597 127606 127609, overlap 127593 127591 AAGGTAAAATATTAA TTGGAATATTTT TGA AAAATATTCCAA TTTTTCATAAGTTTA TERM 162 127597 - 127623 + F 100 -12.6 -4.78764 | opp_overlap 127597 127593 127591, overlap 127606 127609 AAGGTAAAATATTAA TTGGAATATTTT TGA AAAATATTCCAA TTTTTCATAAGTTTA TERM 163 127956 - 127927 - g 71 -7.3 -3.76107 | opp_overlap 127933 127936, overlap 127930 127933 AGGCAAAAATCATAA TAACAACAATTGC TATG GCGATTGTTATTA CAGCGACATTAATGA CLL_A0114 127860 - 128906 + | 3D/G5 domain protein TERM 164 128918 - 128939 + F 100 -7.4 -6.23545 | GTAGTTGATTTTTAG GAGATAAC ATGTTA GTTATCTC TTTTTTTTATTTAAA TERM 165 129091 - 129081 - g 77 -5.4 -5.0133 | GATGCTGTTAAAAAA GCAT TAG ATGC TGAAATAATAGCAGT CLL_A0115 129024 - 129581 + | putative primase homolog TERM 166 130027 - 129998 - g 74 -8.1 -3.62816 | overlap 129999 TAAAGAGAATCATAA GTTTGAATCATTA ACTA TAATGATTCAAAA AGAAGTAGCGGAAAG TERM 167 130026 - 129999 - g 87 -11.6 -2.76605 | overlap 129998 AAAGAGAATCATAAG TTTGAATCATTA ACTA TAATGATTCAAA AAGAAGTAGCGGAAA ksgA 129582 - 130433 + | dimethyladenosine transferase CLL_A0117 130701 - 132131 + | hypothetical protein CLL_A0118 132142 - 132711 + | hypothetical protein TERM 168 132744 - 132792 + F 95 -12.1 -3.29829 | opp_overlap 132746, overlap 132746 ATGTATAAGTATTAT AATTTAAGTATCATGGGGGAATT GAA AATTCATCTATGATACTTAAATA TTATAAGGAGATATG TERM 169 132790 - 132746 - f 91 -10.3 -3.48684 | opp_overlap 132744 132746 GTATAAGTATTATAA TTTAAGTATCATGGGGGAATT GAA AATTCATCTATGATACTTAAA TATTATAAGGAGATA TERM 170 132746 - 132790 + F 100 -14.7 -3.21593 | opp_overlap 132746, overlap 132744 GTATAAGTATTATAA TTTAAGTATCATGGGGGAATT GAA AATTCATCTATGATACTTAAA TATTATAAGGAGATA TERM 171 133319 - 133329 + G 71 -4 -5.16237 | ACTCAAATTTACTCA TCAA TTT TTGA TTTTTTACTAGGATT lgt 132809 - 133567 + | prolipoprotein diacylglyceryl transferase CLL_A0120 133617 - 134402 + | putative lipoprotein CLL_A0121 134417 - 135259 + | Mrp protein CLL_A0122 135326 - 135514 + | hypothetical protein TERM 172 135552 - 135520 - T 100 -13.7 -5.89921 | opp_overlap 135520 AGTAGAATAAAAAAA TGTGGTGTTAGAAAT TTA ATTTTTAACACCACA TTTTTTATATATCTA TERM 173 135520 - 135552 + T 100 -15.9 -5.4492 | opp_overlap 135520 AGTAGAATAAAAAAA TGTGGTGTTAGAAAT TTA ATTTTTAACACCACA TTTTTTATATATCTA CLL_A0123 136343 - 135666 - | probable proton-coupled thiamine transporter YuaJ CLL_A0124 136804 - 136598 - | hypothetical protein TERM 174 137015 - 136975 - R 100 -12.2 -5.27477 | opp_overlap 136984 ATTTTAACTAAAAAA GTACCTTGTTTTAAGATA AATAA TATTCTAAAACAAGGTAC AAAATTAATAAAGGT CLL_A0125 137472 - 137020 - | transcriptional regulator, PadR family CLL_A0126 138322 - 137474 - | DegV family protein TERM 175 138413 - 138359 - H 100 -18.5 -3.18582 | gap 1, opp_overlap 138359 138360 138361 138364, overlap 138362 138364 138377 TAGTCTATTCATTAA TTATATCACTATCGATAACTATATCA ATAG TGATATAGTTATCGATAGTGATA-AG TTCTTAGATAATATT TERM 176 138359 - 138396 + H 93 -10.9 -3.38272 | opp_overlap 138359 138362 138364 138377, overlap 138360 138361 138364 TAGTCTATTCATTAA TTATATCACTATCGATA ACTA TATCAATAGTGATATAG TTATCGATAGTGATA TERM 177 138360 - 138413 + H 100 -22.3 -3.70511 | opp_overlap 138359 138362 138364 138377, overlap 138359 138361 138364 AGTCTATTCATTAAT TATATCACTATCGATAACTATATCA ATAG TGATATAGTTATCGATAGTGATAAG TTCTTAGATAATATT TERM 178 138361 - 138412 + H 100 -23.6 -2.81584 | opp_overlap 138359 138362 138364 138377, overlap 138359 138360 138364 GTCTATTCATTAATT ATATCACTATCGATAACTATATCA ATAG TGATATAGTTATCGATAGTGATAA GTTCTTAGATAATAT TERM 179 138411 - 138362 - H 100 -27.1 -2.79098 | opp_overlap 138359 138361 138360 138364, overlap 138359 138364 138377 TCTATTCATTAATTA TATCACTATCGATAACTATATCA ATAG TGATATAGTTATCGATAGTGATA AGTTCTTAGATAATA TERM 180 138364 - 138409 + H 100 -25.3 -2.66602 | opp_overlap 138364 138362 138359 138377, overlap 138359 138361 138360 TATTCATTAATTATA TCACTATCGATAACTATATCA ATAG TGATATAGTTATCGATAGTGA TAAGTTCTTAGATAA TERM 181 138409 - 138364 - H 100 -25.3 -2.94199 | opp_overlap 138359 138361 138360 138364, overlap 138362 138359 138377 TATTCATTAATTATA TCACTATCGATAACTATATCA ATAG TGATATAGTTATCGATAGTGA TAAGTTCTTAGATAA TERM 182 138396 - 138377 - H 70 -8 -3.38272 | opp_overlap 138359 138364 138361 138360, overlap 138364 138362 138359 TATCACTATCGATAA CTATATCA ATAG TGATATAG TTATCGATAGTGATA TERM 183 139504 - 139524 + G 70 -6.9 -3.93673 | opp_overlap 139500 139498 139504 ATATAGGAATACCAA CTAATGATG ATG CAGCATTAG TTTGTGAAGTATTTC nrdD 138621 - 140726 + | anaerobic ribonucleoside-triphosphate reductase TERM 184 140768 - 140791 + F 100 -12.6 -5.25656 | overlap 140774 140776 AGCATTGAATTTGAG TGAGGATACT AAAA AGTATCCTCA TTTTTTAGTGCTTTT nifV 141154 - 142308 + | homocitrate synthase CLL_A0129 142371 - 144293 + | putative aconitate hydratase TERM 185 144384 - 144343 - f 70 -6.2 -4.3586 | opp_overlap 144346, overlap 144346 144363 TGACCTATATCAAAA GAAGACTTTCTTAAAT AAAATAAAAA ATTTAAGAAAGTCTTT TTATTTTAATACAAG TERM 186 144346 - 144381 + F 100 -7.9 -5.50723 | opp_overlap 144343 144346 144363 CCTATATCAAAAGAA GACTTTCTTAAAT AAAATAAAAA ATTTAAGAAAGTC TTTTTATTTTAATAC TERM 187 144381 - 144346 - f 78 -7.9 -4.29302 | opp_overlap 144346, overlap 144343 144363 CCTATATCAAAAGAA GACTTTCTTAAAT AAAATAAAAA ATTTAAGAAAGTC TTTTTATTTTAATAC TERM 188 145555 - 145541 - g 72 -5.8 -4.49311 | AGTATTAGTAGAAAA TATGAA TTC TTCATA TGCACTGGTAGAATT TERM 189 145817 - 145803 - g 72 -7.2 -3.97057 | opp_overlap 145803, overlap 145793 GATAATGGAACTAAA GAAGTT CCA AACTTC TCCCTTTCATATGGA TERM 190 146122 - 146109 - g 73 -5.3 -4.64144 | opp_overlap 146099 146107, overlap 146099 146096 AACAATCCTGAAAAA GGATT AATA AATCC TATAGATTTTATACC CLL_A0130 144516 - 146771 + | putative signaling protein TERM 191 146875 - 146929 + F 100 -13.7 -5.32599 | gap 2, opp_overlap 146881, overlap 146876 146881 ATAATGAAGTGTTTT TA-AAAAGCTACTAATATAAATAT-TA AAT TATATATTTATATTAGTAGCTTTTCTA TTTTTGTGTTTTATA TERM 192 146876 - 146927 + F 100 -14.4 -4.25747 | gap 1, opp_overlap 146881, overlap 146875 146881 TAATGAAGTGTTTTT AAAAAGCTACTAATATAAATAT-TA AAT TATATATTTATATTAGTAGCTTTTC TATTTTTGTGTTTTA TERM 193 146881 - 146922 + F 100 -14.3 -5.02287 | gap 1, opp_overlap 146881, overlap 146876 146875 AAGTGTTTTTAAAAA GCTACTAATATAAATAT-TA AAT TATATATTTATATTAGTAGC TTTTCTATTTTTGTG TERM 194 146922 - 146881 - f 100 -14.3 -4.57341 | gap 1, opp_overlap 146876 146875 146881 AAGTGTTTTTAAAAA GCTACTAATATAAATAT-TA AAT TATATATTTATATTAGTAGC TTTTCTATTTTTGTG nrdG 147033 - 147542 + | anaerobic ribonucleoside-triphosphate reductase activating protein CLL_A0132 147619 - 148227 + | DNA-3-methyladenine glycosylase TERM 195 148297 - 148257 - f 100 -10.7 -4.64076 | opp_overlap 148260 148264, overlap 148260 148265 AAGTAAATCATAAAA TAAGAAAACTCTTCATTAT TAT ATAATGGAGAGCTTTCTTC GTAAATAAATAATTC TERM 196 148260 - 148294 + F 93 -12.4 -3.18912 | opp_overlap 148257 148260 148265, overlap 148264 TAAATCATAAAATAA GAAAACTCTTCATTAT TAT ATAATGGAGAGCTTTC TTCGTAAATAAATAA TERM 197 148294 - 148260 - f 100 -12.4 -4.40732 | opp_overlap 148260 148264, overlap 148257 148265 TAAATCATAAAATAA GAAAACTCTTCATTAT TAT ATAATGGAGAGCTTTC TTCGTAAATAAATAA TERM 198 148264 - 148290 + F 75 -7.4 -4.258 | opp_overlap 148260 148257 148265, overlap 148260 TCATAAAATAAGAAA ACTCTTCATTAT TAT ATAATGGAGAGC TTTCTTCGTAAATAA TERM 199 148289 - 148265 - f 100 -8.7 -5.12916 | opp_overlap 148264 148260, overlap 148260 148257 CATAAAATAAGAAAA CTCTTCATTAT TAT ATAATGGAGAG CTTTCTTCGTAAATA CLL_A0133 148355 - 148471 + | hypothetical protein CLL_A0134 148608 - 149612 + | transcriptional regulator, lacI family TERM 200 149596 - 149621 + F 83 -7.8 -4.62471 | opp_overlap 149595 149601, overlap 149601 CTGAAAGAGAAACTG TAAAATGGTT AAAATA AACCATTTTA TTTTTCAAGGTTACG CLL_A0135 149692 - 151353 + | oligo-1,6-glucosidase TERM 201 151401 - 151357 - f 91 -10.3 -3.68073 | opp_overlap 151364, overlap 151358 151360 151397 TATCTTATTTAATAA TTATATATCTTGTTTTGGGAA CGA TTCCTGAAACAAGATATATAG CCTATAAAGATTATA TERM 202 151400 - 151358 - f 100 -13.8 -2.80522 | opp_overlap 151364, overlap 151357 151360 151397 ATCTTATTTAATAAT TATATATCTTGTTTTGGGAA CGA TTCCTGAAACAAGATATATA GCCTATAAAGATTAT TERM 203 151398 - 151360 - f 90 -12 -2.94872 | opp_overlap 151364, overlap 151358 151357 151397 CTTATTTAATAATTA TATATCTTGTTTTGGGAA CGA TTCCTGAAACAAGATATA TAGCCTATAAAGATT TERM 204 151364 - 151394 + F 91 -12.8 -2.90763 | opp_overlap 151360 151358 151357 TTTAATAATTATATA TCTTGTTTTGGGAA CGA TTCCTGAAACAAGA TATATAGCCTATAAA CLL_A0136 151481 - 152725 + | sugar ABC transporter substrate-binding protein CLL_A0137 152750 - 153613 + | ABC-type sugar transport system, permease component TERM 205 153880 - 153870 - g 71 -4 -5.18357 | TAATGCATTAAAAAA TAGT TTA ACTA TTACAATAACAACAG CLL_A0138 153613 - 154482 + | sugar ABC transporter permease TERM 206 154573 - 154631 + T 78 -10.2 -2.5507 | gap 1, opp_overlap 154588, overlap 154576 154588 TTTTATAATTTCTTG TATGAAAAACAAAAACTATATTTAGCA GAATAA TGCTTAATATAGTTTTTGTCTTT-ATA ATATATTAATTTATT TERM 207 154576 - 154629 + T 80 -10 -2.79677 | opp_overlap 154588, overlap 154573 154588 TATAATTTCTTGTAT GAAAAACAAAAACTATATTTAGCA GAATAA TGCTTAATATAGTTTTTGTCTTTA TAATATATTAATTTA TERM 208 154617 - 154588 - T 90 -6.6 -5.65496 | opp_overlap 154576 154573 154588 TATGAAAAACAAAAA CTATATTTAGCA GAATAA TGCTTAATATAG TTTTTGTCTTTATAA TERM 209 154588 - 154617 + T 83 -6.6 -5.24799 | opp_overlap 154588, overlap 154576 154573 TATGAAAAACAAAAA CTATATTTAGCA GAATAA TGCTTAATATAG TTTTTGTCTTTATAA CLL_A0139 154824 - 154642 - | hypothetical protein TERM 210 155265 - 155288 + G 76 -8.4 -3.58184 | opp_overlap 155262 155274, overlap 155269 155272 155274 AGAAACATAGACGTA TTACTATAAT TGCA ATTATAGTAA TTATAATTGTAATAT CLL_A0140 155180 - 156343 + | encapsulation protein CapA gufA 156950 - 157747 + | GufA protein TERM 211 158031 - 157999 - T 77 -7.1 -4.52857 | opp_overlap 157994 158002, overlap 158002 ATGTTTGATATAAAA TAAGAGAGGTAAAAT ATA AATTTACCCCTCTTT TTTATCCCTTATAAA TERM 212 158028 - 158002 - T 86 -8.8 -4.38141 | opp_overlap 158002 157994, overlap 157999 TTTGATATAAAATAA GAGAGGTAAAAT ATA AATTTACCCCTC TTTTTTATCCCTTAT TERM 213 158002 - 158028 + T 87 -6.6 -5.3236 | opp_overlap 157999 158002, overlap 157994 TTTGATATAAAATAA GAGAGGTAAAAT ATA AATTTACCCCTC TTTTTTATCCCTTAT asnS 159475 - 158081 - | asparaginyl-tRNA synthetase TERM 214 159379 - 159369 - G 70 -5.4 -4.62054 | opp_overlap 159369, overlap 159364 TCAATGAAACCAAAA GCAT TAG ATGC TCTTAAAGTTCTTAT TERM 215 159609 - 159586 - R 100 -11 -6.04378 | opp_overlap 159584 159586 AAAGTATAAAAAAAA CTCCCGTCCC ATAT GGGACGAAAG TGTTAATTCGTGGTA CLL_A0143 160580 - 159882 - | Ser/Thr protein phosphatase family protein CLL_A0144 160852 - 161928 + | metallopeptidase, family M24 TERM 216 161944 - 161972 + T 100 -7.6 -5.66989 | opp_overlap 161944 AGTACTAATTAAAAA TGATTGAAGCAT TTACT ATACTTCAATCA TTTTTTTGCTGTTTA TERM 217 161972 - 161944 - T 100 -9.8 -4.90869 | opp_overlap 161944 AGTACTAATTAAAAA TGATTGAAGCAT TTACT ATACTTCAATCA TTTTTTTGCTGTTTA murC 163382 - 162000 - | UDP-N-acetylmuramate--alanine ligase TERM 218 163706 - 163693 - g 74 -6.7 -4.43949 | AAAATTAAACAGAAA CAACC GAGT GGTTG CTATAACAAAAATTT purR 163673 - 164488 + | pur operon repressor TERM 219 164774 - 164763 - g 78 -5.8 -4.91109 | opp_overlap 164762 TGCCTAGTAGAAAAA CTCC AACT GGAG AATTTAAAGACATCG CLL_A0147 164609 - 164887 + | putative septation protein spoVG TERM 220 164907 - 164933 + F 70 -3.8 -5.25803 | opp_overlap 164912, overlap 164896 164912 ATAATTGAGAAAAAA TGAGAGGAAG ATAAATA CTTCCTTTTA TTTTTTGTACAAATT TERM 221 164912 - 164928 + F 75 -3.7 -5.49579 | opp_overlap 164912, overlap 164907 164896 TGAGAAAAAATGAGA GGAAG ATAAATA CTTCC TTTTATTTTTTGTAC TERM 222 165375 - 165385 + G 70 -6.8 -3.90588 | opp_overlap 165382 GTTGCAGTTTTTGCT GGAG ATA CTCC TTTAATTAAGGAATC TERM 223 166274 - 166242 - g 100 -7.3 -5.65927 | opp_overlap 166249 GATGGAAAGAAAAAA TATAAAACTATTATT GGA AATCATAGCTTTATA GGATGTAATACAAAC glmU 165072 - 166439 + | UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase prsA 166486 - 167445 + | ribose-phosphate pyrophosphokinase TERM 224 167498 - 167459 - f 74 -8.9 -2.99319 | gap 1, opp_overlap 167467, overlap 167467 AATCTTGTATACATA TAATAAAACCTCCTATGA GTATA TCATGGGAGG-TTTATTA ACATGTTAAACAGGA TERM 225 167467 - 167491 + F 95 -10.8 -4.20749 | opp_overlap 167459 167467 ATACATATAATAAAA CCTCCTATGA GTATA TCATGGGAGG TTTATTAACATGTTA TERM 226 167491 - 167467 - f 88 -8.6 -4.88495 | opp_overlap 167467, overlap 167459 ATACATATAATAAAA CCTCCTATGA GTATA TCATGGGAGG TTTATTAACATGTTA TERM 227 167965 - 167945 - g 71 -7.7 -3.54701 | opp_overlap 167945 167944 167947 167963, overlap 167940 TAGAAAGTAATAAGA CAGATATAA TAT CTATATCTG ATTTATCAGTAAATT CLL_A0150 167557 - 168243 + | two-component response regulator TERM 228 168265 - 168241 - f 70 -4.5 -4.91429 | opp_overlap 168241 168244 168247, overlap 168244 AAATTTCAAATAAAA TAATAATATAT AAA ATATATTATTG TTTAGTATAATAGAA TERM 229 168262 - 168244 - f 72 -6.2 -4.54026 | opp_overlap 168244 168241 168247, overlap 168241 TTTCAAATAAAATAA TAATATAT AAA ATATATTA TTGTTTAGTATAATA pth 168322 - 168897 + | peptidyl-tRNA hydrolase TERM 230 169474 - 169500 + G 74 -6.1 -4.59773 | gap 1, opp_overlap 169473 ATATATTCCCAACAT GTTCAACT-TAT CCTT ATAGAGTTGAAC TTTTTGGAGATGAGG TERM 231 169611 - 169596 - g 70 -6.2 -4.07568 | GTGTTTCCTGCAAAA GAGATA ATAG TATCTC AAGAATCAATGACTA TERM 232 170424 - 170407 - g 71 -2.7 -5.48213 | TATCTAAAATAAAAA GCTTTAA TGAA TTGAAGC CAGGAGATTATGTAG TERM 233 171556 - 171546 - g 71 -4 -5.02439 | opp_overlap 171546 AGACAATTAGAAAAA GAAA TGA TTTC ATTTATGGATCAAGA mfd 168912 - 172415 + | transcription-repair coupling factor CLL_A0153 172551 - 173582 + | foldase protein PrsA TERM 234 173603 - 173641 + F 100 -12 -6.32017 | opp_overlap 173603 ATTGAATCATAAAAA TGCTTCTAAATGAGTAAT TTA ATTGCTTATTTGGAGGCA TTTTTTTTATTTATT spoVT 173774 - 174325 + | stage V sporulation protein T TERM 235 175283 - 175267 - g 70 -8.1 -3.0464 | opp_overlap 175267, overlap 175276 AAGGCATCTGTAATA GTTAATG TAC CATTAAC TTTATCAATGGCATT TERM 236 175267 - 175283 + G 78 -8.1 -3.92641 | opp_overlap 175267 175276 AAGGCATCTGTAATA GTTAATG TAC CATTAAC TTTATCAATGGCATT CLL_A0155 174427 - 175962 + | stage V sporulation protein B TERM 237 176313 - 176303 - g 71 -2.6 -5.43553 | ATGTAAAAAAGAAAA TATA GAT TATA AAGTCATTCCAGCAG CLL_A0156 175977 - 177443 + | MazG family protein hup 177645 - 177923 + | DNA-binding protein HU TERM 238 177957 - 177930 - f 100 -8.4 -5.61913 | opp_overlap 177933 177936, overlap 177932 177933 AATAAATAGAAAAAA TATGAACCCGAG TTTT CTCGGGTTCTTT TAAAAAGGGAGCAAC TERM 239 177955 - 177932 - f 100 -11 -4.40478 | opp_overlap 177933 177936, overlap 177930 177933 TAAATAGAAAAAATA TGAACCCGAG TTTT CTCGGGTTCT TTTAAAAAGGGAGCA TERM 240 177954 - 177933 - f 100 -14.5 -3.21847 | opp_overlap 177933 177936, overlap 177932 177930 AAATAGAAAAAATAT GAACCCGAG TTTT CTCGGGTTC TTTTAAAAAGGGAGC TERM 241 177933 - 177954 + F 100 -14.5 -4.07568 | opp_overlap 177932 177930 177933, overlap 177936 AAATAGAAAAAATAT GAACCCGAG TTTT CTCGGGTTC TTTTAAAAAGGGAGC TERM 242 177936 - 177951 + F 95 -10.4 -4.17048 | opp_overlap 177933 177932 177930, overlap 177933 TAGAAAAAATATGAA CCCGAG TTTT CTCGGG TTCTTTTAAAAAGGG CLL_A0158 177974 - 178234 + | S4 domain protein TERM 243 178267 - 178225 - f 100 -13.1 -3.52995 | gap 1, opp_overlap 178229, overlap 178229 TGAAGGACAAGAAGA TAAAGAGTAGCC-TAGATAA GTGT TTATCAAAGGCTACTCTTTA AATCTATAATCTTAT TERM 244 178229 - 178263 + F 84 -9.5 -3.74792 | gap 1, opp_overlap 178225 178229 GGACAAGAAGATAAA GAGTAGCC-TAGATAA GTGT TTATCAAAGGCTACTC TTTAAATCTATAATC TERM 245 178263 - 178229 - f 93 -9.5 -4.37544 | gap 1, opp_overlap 178229, overlap 178225 GGACAAGAAGATAAA GAGTAGCC-TAGATAA GTGT TTATCAAAGGCTACTC TTTAAATCTATAATC yabP 178367 - 178660 + | sporulation protein YabP TERM 246 178806 - 178816 + F 71 -5.4 -4.64763 | AAAAATAATTACAGT TGTC GAA GACA TTCTTTTTTGGATAC TERM 247 178999 - 178976 - f 74 -8.4 -3.34242 | opp_overlap 178973 TAGAACAATTAGTAA TAAAAAAAGT AAAT ACTTTTTTTA GAATAATTTTCAAAA CLL_A0160 179227 - 179442 + | cell division protein CLL_A0161 179499 - 179915 + | RNA-binding protein TERM 248 180027 - 179991 - f 79 -8.3 -4.053 | gap 1, opp_overlap 179991 179992 179993, overlap 179992 ATTATGTTATATAAA GCCCTTATAAACAGGT TTTAAC ACCTATTTATAAGG-C ATTTTTTACGTTATT TERM 249 180027 - 179992 - f 71 -8.5 -3.02698 | opp_overlap 179992 179991 179993, overlap 179991 TTATGTTATATAAAG CCCTTATAAACAGGT TTTAAC ACCTATTTATAAGGC ATTTTTTACGTTATT TERM 250 179993 - 180026 + F 80 -9.8 -2.81195 | opp_overlap 179991 179992, overlap 179992 179991 TATGTTATATAAAGC CCTTATAAACAGGT TTTAAC ACCTATTTATAAGG CATTTTTTACGTTAT TERM 251 180795 - 180817 + F 100 -12.2 -5.88197 | opp_overlap 180795, overlap 180780 GTCTTCGGCACCAAA GACTTAAGTT ATA AACTTAAGTC TTTTTTTATGTTTAA TERM 252 180817 - 180795 - f 95 -12.2 -3.72576 | opp_overlap 180780 180795 GTCTTCGGCACCAAA GACTTAAGTT ATA AACTTAAGTC TTTTTTTATGTTTAA TERM 253 180867 - 180855 - f 70 -2.7 -5.62045 | AGATATAATAAAAAA TCTCA TTT TAAGA TTGTAAATAATAAAT TERM 254 180911 - 180924 + F 100 -8.1 -6.09888 | opp_overlap 180908 180910 AATTAAAAATCATAT GTGGC CATA GCCAC TTTTTTTTATTCAAA TERM 255 182255 - 182238 - g 75 -5.7 -4.71061 | ATTTATACCTAAAAA TCTATAT AAGA ATATAGA AATTGAAATAAATAC spoIIE 181303 - 183684 + | stage II sporulation protein E TERM 256 183693 - 183717 + F 93 -7.9 -5.10461 | opp_overlap 183693 183688, overlap 183676 TGTTTAATTATAAAA CTGCTGTATAT TAA AAATGCAGCAG TTTTTATTGGGTAGA CLL_A0170 183823 - 185229 + | tRNA(Ile)-lysidine synthase hpt 185235 - 185774 + | hypoxanthine phosphoribosyltransferase TERM 257 186517 - 186527 + G 73 -5.4 -4.6759 | opp_overlap 186517 CCTTTCTTTAGTATA TCAG GAT CTGA TTTTGTTGAAATGTT TERM 258 186710 - 186696 - g 71 -7.2 -3.73509 | opp_overlap 186690 AGAGCAAACTCTAAA TCAACT TTT AGTTGA AATGGATGGATTTGG TERM 259 186943 - 186926 - g 75 -7 -4.22883 | TATTAGCGAAAAGAA CTCCTG GATTCT CAGGAG CAGATTTAGAAAATT TERM 260 187049 - 187030 - g 86 -9.4 -3.73302 | CAAGACATGGAAGAA GCTATAAC AAGA GTTATAGC AGGTCCTGAAAAGAA ftsH 185848 - 187653 + | ATP-dependent metallopeptidase HflB TERM 261 187660 - 187692 + F 100 -16.7 -5.56673 | opp_overlap 187660 AATAATTAAAGTAAA GAGATTTTTAAAAGA TAT TCTTTTAAAAATCTC TTTTTTATTATAAAT TERM 262 187692 - 187660 - f 100 -16.7 -4.17109 | opp_overlap 187660 AATAATTAAAGTAAA GAGATTTTTAAAAGA TAT TCTTTTAAAAATCTC TTTTTTATTATAAAT fhs 187875 - 189545 + | formate--tetrahydrofolate ligase TERM 263 189623 - 189638 + F 77 -6.8 -4.71222 | opp_overlap 189622 189623 AATTACTAAATTAAG GCAGCT TTAG GGCTGC TTTTAATTTTAATAT TERM 264 190012 - 190022 + G 72 -6.8 -4.24002 | opp_overlap 190011 GACAGAATAGTTAAT GCAG TTG CTGC TTTTGAAATTTACAA coaX 189673 - 190446 + | pantothenate kinase, type III TERM 265 190860 - 190848 - g 78 -2.7 -5.9003 | overlap 190840 AAAGCAATAAAAAAA GTTTC TAA AAAAC CTGTAACAGTAAAGT nifR 190452 - 191417 + | NifR3 family protein TERM 266 191757 - 191732 - g 77 -6.3 -4.74103 | opp_overlap 191733, overlap 191733 GTTTGAATGGAAAAA GCTTGTATAAT TTAA ATTATACAAGT GAATTTCAAAAACAA TERM 267 191733 - 191756 + G 78 -9.8 -2.64155 | opp_overlap 191732 191733 TTTGAATGGAAAAAG CTTGTATAAT TTAA ATTATACAAG TGAATTTCAAAAACA TERM 268 191756 - 191733 - g 85 -9.8 -3.4398 | opp_overlap 191733, overlap 191732 TTTGAATGGAAAAAG CTTGTATAAT TTAA ATTATACAAG TGAATTTCAAAAACA TERM 269 192194 - 192177 - g 70 -7.7 -3.38836 | opp_overlap 192177, overlap 192176 ATCGTTAAAAGAAAT GCCACCA CAAT TAGTGGC TTCTATAATTAGAAA TERM 270 192257 - 192245 - g 72 -4.9 -4.946 | ATGAAATATTAAAAA GTAAT GAT ATTAC ACTTGAATCAATACT CLL_A0176 191485 - 192309 + | hypothetical protein greA 192424 - 192906 + | transcription elongation factor GreA TERM 271 193492 - 193480 - g 70 -4.9 -4.80487 | overlap 193471 193470 CAGAAGTAAAAGAAA CTTTT ATA AAAAG AAGTAAAATTATTTC lysS 192951 - 194456 + | lysyl-tRNA synthetase TERM 272 194483 - 194507 + F 100 -11.5 -4.16943 | opp_overlap 194483 TTAAGTGTATTAAAA GCCCCATATTA TAA TATTATGGGGC TTTTGACATATAAAA TERM 273 194507 - 194483 - f 100 -11.5 -4.28361 | opp_overlap 194483 TTAAGTGTATTAAAA GCCCCATATTA TAA TATTATGGGGC TTTTGACATATAAAA TERM 274 194887 - 194845 - f 100 -15.3 -3.0395 | opp_overlap 194846, overlap 194848 194860 194885 AGATAGTTTTCAACA GGAGTCTTATAAAAATAGA TAAAG TCTATTTTTATAAGACTCT TTTTATGTAATAAAA TERM 275 194846 - 194886 + F 100 -19.5 -5.00895 | opp_overlap 194845 194848 194860 194885 GATAGTTTTCAACAG GAGTCTTATAAAAATAGAT AAA GTCTATTTTTATAAGACTC TTTTTATGTAATAAA TERM 276 194884 - 194848 - f 100 -15.6 -2.74192 | opp_overlap 194846, overlap 194845 194860 TAGTTTTCAACAGGA GTCTTATAAAAATAGA TAAAG TCTATTTTTATAAGAC TCTTTTTATGTAATA TERM 277 195280 - 195238 - f 78 -9.5 -3.03771 | opp_overlap 195239, overlap 195241 195253 GTATAGTTTTTAATA GGAGTTTTATAAAAGTAGA TAAAG TCTATTTTTATAAAACTCT TTTTTGTATGATAAA TERM 278 195239 - 195279 + F 100 -15.9 -5.39721 | opp_overlap 195238 195241 195253 TATAGTTTTTAATAG GAGTTTTATAAAAGTAGAT AAA GTCTATTTTTATAAAACTC TTTTTTGTATGATAA TERM 279 195277 - 195241 - f 79 -9.8 -2.74192 | opp_overlap 195239, overlap 195238 195253 TAGTTTTTAATAGGA GTTTTATAAAAGTAGA TAAAG TCTATTTTTATAAAAC TCTTTTTTGTATGAT TERM 280 195660 - 195618 - f 78 -9.5 -3.07233 | opp_overlap 195619 195657, overlap 195621 195633 195657 GTATAATTTTTAATA GGAGTTTTATAAAAGTAGA TAAAG TCTATTTTTATAAAACTCT TTTTTAATAAAAAGA TERM 281 195619 - 195659 + F 100 -15.9 -5.14563 | opp_overlap 195618 195621 195633 195657, overlap 195657 TATAATTTTTAATAG GAGTTTTATAAAAGTAGAT AAA GTCTATTTTTATAAAACTC TTTTTTAATAAAAAG TERM 282 195657 - 195621 - f 79 -9.8 -2.74999 | opp_overlap 195619, overlap 195618 195633 TAATTTTTAATAGGA GTTTTATAAAAGTAGA TAAAG TCTATTTTTATAAAAC TCTTTTTTAATAAAA TERM 283 195676 - 195657 - f 81 -8 -4.38712 | opp_overlap 195619 195657, overlap 195618 TCTATTTTTATAAAA CTCTTTTT TAAT AAAAAGAG TTTATATTTTAAAAT TERM 284 195657 - 195676 + F 81 -8 -4.45771 | opp_overlap 195618 195657, overlap 195619 TCTATTTTTATAAAA CTCTTTTT TAAT AAAAAGAG TTTATATTTTAAAAT glyS 195982 - 197373 + | glycyl-tRNA synthetase TERM 285 197408 - 197445 + F 100 -14.5 -4.94992 | opp_overlap 197407 197402 TAATAGATATTATAG GTCATTTTAAGCTAGGA TAGT TCTTAGTTTAAAATGAC TTTTTATCCATTTGC TERM 286 197495 - 197479 - f 75 -6.7 -4.40963 | overlap 197476 ATGTGGTAAAAATAA TGTTATA ATT TATAACA TATGGGGAATTTTAA murD 197560 - 198936 + | UDP-N-acetylmuramoylalanine--D-glutamate ligase TERM 287 198992 - 198951 - Tf 100 -13.5 -3.67918 | opp_overlap 198951 AATCAATAGTTTAAA CTTACATATATATTAAAGT ATAG AGTTTAATATATATGTAAG TATATTGAGATTAAC TERM 288 198951 - 198992 + TF 95 -13.5 -3.10612 | opp_overlap 198951 AATCAATAGTTTAAA CTTACATATATATTAAAGT ATAG AGTTTAATATATATGTAAG TATATTGAGATTAAC TERM 289 199034 - 199061 + TF 81 -5.7 -5.43974 | opp_overlap 199029 199034 ATGTAATAATTAAAA GACTGATGT AGCTATAATG ACATCAGTC TTTTTGTTTAATTTT TERM 290 199061 - 199034 - Tf 71 -5.7 -4.56736 | opp_overlap 199034, overlap 199029 ATGTAATAATTAAAA GACTGATGT AGCTATAATG ACATCAGTC TTTTTGTTTAATTTT CLL_A0184 200073 - 199069 - | putative basic protein CLL_A0185 200072 - 200206 + | hypothetical protein TERM 291 202062 - 202043 - TR 75 -9.2 -2.65808 | opp_overlap 202046 202049, overlap 202040 202055 AGTCGTAACAAGGTA GCCGTAGG AGAA CCTGCGGC TGGATCACCTCCTTT TERM 292 202171 - 202192 + Tr 71 -8.1 -2.99649 | TGTATTTCTGTTCAA TTTTGAGGG ATTT TCCTCAAAA TGTCTATGGGGGTAT TERM 293 202609 - 202594 - TR 72 -9 -2.69489 | opp_overlap 202594 202596, overlap 202591 GAATGAGGAAACTCA CATGGG AAAC CCCATG TATCGTAAAGTGAAT TERM 294 202594 - 202609 + Tr 73 -9 -2.79915 | opp_overlap 202594 202591, overlap 202596 GAATGAGGAAACTCA CATGGG AAAC CCCATG TATCGTAAAGTGAAT TERM 295 202753 - 202736 - TR 76 -8.5 -3.695 | GGGAAAGAGCCCAAA CCAAAGA TTTA TCTTTGG GGTTGCGGACAGAAC TERM 296 202920 - 202905 - TR 81 -10.4 -2.71011 | ACCTTGTGGGAAGCA GGGAGG ACCA CCTCCC AAGGCTAAATACTAC TERM 297 202994 - 202983 - TR 75 -7.2 -4.2354 | GAAAGGTGAAAAGAA CCCC GGGA GGGG AGTGAAATAGAACCT TERM 298 203230 - 203220 - TR 71 -6.8 -4.15453 | opp_overlap 203223 GAAGCGAGGGTAAAA CCTC GTG GAGG ACCGAACCACGTTGC TERM 299 203820 - 203804 - TR 74 -8.7 -3.05343 | CCCACAGGCCGAATA CCTAAGG TTT CCTCAGG AAGGTTCGTCCGCTG TERM 300 205406 - 205429 + Tr 79 -9.8 -2.67694 | overlap 205403 ACAATTTATGTGTAA TTTTGAAAGA ATAA TCTTTCAAAA TAATCTGGTGATGAT TERM 301 205734 - 205713 - TR 75 -7.4 -4.25104 | opp_overlap 205713 GCGCCTCCATTAAAA CCTTGAAT TATTTG ATTCAAGG TTTTTTTTGTGTCTA TERM 302 205713 - 205734 + Tr 100 -8.1 -6.06529 | opp_overlap 205713 GCGCCTCCATTAAAA CCTTGAATT ATTT GATTCAAGG TTTTTTTTGTGTCTA TERM 303 205955 - 205943 - TR 76 -6.3 -4.90519 | AAAGTAAAAAAAGAA CCTAT ATA ATAGG CAGAAAAAAATGTCT CLL_A0194 206936 - 205989 - | magnesium and cobalt transporter TERM 304 207476 - 207457 - g 79 -6.6 -4.73613 | TTATTATCAATAAAA TTTTTCAT AATA ATGAAAAA AATCTAGAAAGCATT CLL_A0195 207213 - 207689 + | hypothetical protein TERM 305 207714 - 207756 + T 100 -19.7 -5.29445 | opp_overlap 207718 207722 207726 AACAAATGTGTTTAC TATATAAATAAAGGTACTC GAATA GAGTACCTTTATTTATATA TTTTTATTCTTAAAG TERM 306 207752 - 207718 - T 100 -16.1 -2.78715 | opp_overlap 207714, overlap 207722 207726 AATGTGTTTACTATA TAAATAAAGGTACTC GAATA GAGTACCTTTATTTA TATATTTTTATTCTT TERM 307 207748 - 207722 - T 100 -12.5 -4.08706 | opp_overlap 207714, overlap 207718 207726 TGTTTACTATATAAA TAAAGGTACTC GAATA GAGTACCTTTA TTTATATATTTTTAT TERM 308 207744 - 207726 - T 89 -8.9 -4.64048 | opp_overlap 207714, overlap 207722 207718 TACTATATAAATAAA GGTACTC GAATA GAGTACC TTTATTTATATATTT CLL_A0196 208910 - 207750 - | amidohydrolase TERM 309 208315 - 208303 - G 78 -7.7 -4.27192 | opp_overlap 208302 AAATCTTTAGGAAAA CCCTT TTG AAGGG AATTTAATATATTTA TERM 310 208868 - 208849 - G 80 -8 -4.16814 | opp_overlap 208849 208852, overlap 208852 TTATTATATAAATAA GAACTTAA ATCA TTAAGTTC TTTATCACAAGTTGA TERM 311 208849 - 208868 + g 76 -8 -3.87869 | opp_overlap 208849 208852, overlap 208852 TTATTATATAAATAA GAACTTAA ATCA TTAAGTTC TTTATCACAAGTTGA CLL_A0197 209071 - 209241 + | putative CsfB protein TERM 312 209255 - 209239 - f 75 -5.3 -5.08824 | opp_overlap 209224 209239, overlap 209225 209224 GTTTTATTTAAAAAA TAAAAAT TAG ATTTTTA CTTTATTAAGATTTA TERM 313 209275 - 209298 + F 70 -2.5 -5.45802 | opp_overlap 209277, overlap 209277 ATTAAGATTTATTAA AAGCTATAT TTAATT ATATAGCTA TTTTTCTTTTGGAAA CLL_A0198 209394 - 210071 + | thymidylate kinase CLL_A0199 210186 - 210518 + | protein from nitrogen regulatory protein P-II CLL_A0200 210530 - 211462 + | DNA polymerase III subunits gamma and tau CLL_A0201 211466 - 212374 + | PSP1 domain protein CLL_A0202 212518 - 212688 + | hypothetical protein TERM 314 212696 - 212713 + T 100 -7.7 -5.64274 | opp_overlap 212686 212696 212699 AAGAATAGTAAAAAA GATCGTC TATA GACGGTC TTTTTTTATACATAA TERM 315 212713 - 212696 - T 81 -5.5 -5.31545 | opp_overlap 212696, overlap 212686 212699 AAGAATAGTAAAAAA GATCGTC TATA GACGGTC TTTTTTTATACATAA CLL_A0203 213484 - 212846 - | hypothetical protein CLL_A0204 213673 - 214128 + | transcriptional regulator CtsR CLL_A0205 214143 - 214718 + | McsA CLL_A0206 214702 - 215721 + | putative ATP:guanido phosphotransferase CLL_A0207 215746 - 218190 + | negative regulator of genetic competence ClpC/mecB TERM 316 218258 - 218201 - f 78 -7.7 -4.36729 | opp_overlap 218191 218202 218203 218204 218214, overlap 218203 218204 218206 218214 218217 ATTAATAATTTAAAA GATTATCTTAAAA-TAACTTTAATGTA TTTAGG TACATTAAAGTTATTTTTAAGATAG-C TTTTTTATTTTTTTA TERM 317 218202 - 218258 + F 100 -10.8 -6.12458 | gap 1, opp_overlap 218201 218203 218204 218206 218214 218217, overlap 218191 218203 218204 218214 TTAATAATTTAAAAG ATTATCTTAAAA-TAACTTTAATGTAT TTAG GTACATTAAAGTTATTTTTAAGATAGC TTTTTTATTTTTTTA TERM 318 218203 - 218257 + F 100 -14.3 -4.21984 | gap 1, opp_overlap 218201 218203 218204 218206 218214 218217, overlap 218191 218202 218204 218214 TAATAATTTAAAAGA TTATCTTAAAA-TAACTTTAATGTAT TTAG GTACATTAAAGTTATTTTTAAGATAG CTTTTTTATTTTTTT TERM 319 218257 - 218203 - f 95 -11.4 -3.77773 | gap 1, opp_overlap 218191 218203 218202 218204 218214, overlap 218201 218204 218206 218214 218217 TAATAATTTAAAAGA TTATCTTAAAA-TAACTTTAATGTA TTTAGG TACATTAAAGTTATTTTTAAGATAG CTTTTTTATTTTTTT TERM 320 218204 - 218256 + F 100 -15.6 -3.077 | gap 1, opp_overlap 218203 218201 218204 218206 218214 218217, overlap 218191 218203 218202 218214 AATAATTTAAAAGAT TATCTTAAAA-TAACTTTAATGTAT TTAG GTACATTAAAGTTATTTTTAAGATA GCTTTTTTATTTTTT TERM 321 218256 - 218204 - f 100 -14.9 -2.85579 | gap 1, opp_overlap 218191 218204 218203 218202 218214, overlap 218203 218201 218206 218214 218217 AATAATTTAAAAGAT TATCTTAAAA-TAACTTTAATGTA TTTAGG TACATTAAAGTTATTTTTAAGATA GCTTTTTTATTTTTT TERM 322 218254 - 218206 - f 95 -13.1 -2.96152 | gap 1, opp_overlap 218204 218203 218202 218214, overlap 218204 218203 218201 218214 218217 TAATTTAAAAGATTA TCTTAAAA-TAACTTTAATGTA TTTAGG TACATTAAAGTTATTTTTAAGA TAGCTTTTTTATTTT TERM 323 218245 - 218214 - f 95 -10.5 -4.16681 | opp_overlap 218214 218204 218203 218202, overlap 218206 218204 218203 218201 218217 AAGATTATCTTAAAA TAACTTTAATGTA TTTAGG TACATTAAAGTTA TTTTTAAGATAGCTT TERM 324 218214 - 218245 + F 100 -11.2 -4.63184 | opp_overlap 218206 218204 218203 218201 218214 218217, overlap 218204 218203 218202 AAGATTATCTTAAAA TAACTTTAATGTAT TTAG GTACATTAAAGTTA TTTTTAAGATAGCTT TERM 325 218242 - 218217 - f 78 -7.8 -4.20148 | opp_overlap 218214 218204 218203 218202, overlap 218214 218206 218204 218203 218201 ATTATCTTAAAATAA CTTTAATGTA TTTAGG TACATTAAAG TTATTTTTAAGATAG CLL_A0208 218482 - 219417 + | putative thioredoxin reductase CLL_A0209 219422 - 219649 + | hypothetical protein TERM 326 219840 - 219876 + T 73 -3.2 -5.61913 | gap 1, opp_overlap 219840 219833, overlap 219833 TTATAAAATAATAAA GACTTGGAACATACA ATTATTTA TGTAT-TACCAAGTC TTTTTTATATTTATT CLL_A0210 220128 - 219901 - | hypothetical protein CLL_A0211 220363 - 220196 - | hypothetical protein radA 220631 - 221998 + | DNA repair protein RadA CLL_A0213 222016 - 223080 + | DNA integrity scanning protein DisA TERM 327 223084 - 223124 + T 89 -10.1 -3.48276 | gap 1, opp_overlap 223083 223084 223091, overlap 223091 AAAAAGATATAAAAG TAGAAAATCGGTATTACC ACAAAA GGTAA-ACCGATTTTTTA TTATCTAAAAGCAAA TERM 328 223124 - 223084 - T 70 -7.9 -3.47089 | gap 1, opp_overlap 223084 223091, overlap 223083 223091 AAAAAGATATAAAAG TAGAAAATCGGTATTACC ACAAAA GGTAA-ACCGATTTTTTA TTATCTAAAAGCAAA TERM 329 223117 - 223091 - T 74 -6 -4.70046 | gap 1, opp_overlap 223084 223091, overlap 223084 223083 TATAAAAGTAGAAAA TCGGTATTACC ACAAAA GGTAA-ACCGA TTTTTTATTATCTAA TERM 330 223091 - 223117 + T 85 -6 -5.60689 | gap 1, opp_overlap 223091 223084 223083, overlap 223084 TATAAAAGTAGAAAA TCGGTATTACC ACAAAA GGTAA-ACCGA TTTTTTATTATCTAA CLL_A0214 223523 - 223125 - | hypothetical protein TERM 331 223335 - 223347 + g 72 -4.9 -4.86731 | GTCAACAGATTTATC TTCAT TTA ATGAA TTTTGTTTAGAAGCA CLL_A0215 223785 - 224879 + | pin/tram domain protein TERM 332 224938 - 224991 + G 75 -7.1 -4.1673 | gap 2, opp_overlap 224938, overlap 224941 GTGGAAAAGGTAAAA GAATGGGC--ACTGTTCAAAGTAAG CAATAT CTTAGTTTGAATGGTAAGCCCATTC TTTATTACACCATTA TERM 333 225284 - 225269 - g 74 -9 -2.81313 | opp_overlap 225266 225265, overlap 225266 ATATTCAGAAGAGTA TGGTGC AGCA GCACCA GGCGTTATGCCCAAA ispD 224898 - 225572 + | 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase TERM 334 225808 - 225832 + F 100 -8.6 -6.04419 | opp_overlap 225808 GTACCGCGATTATAA GTTCGCCCTA AGATA TAGGGTGGAC TTTTTTTATTATTTT proS 225895 - 227607 + | prolyl-tRNA synthetase TERM 335 227750 - 227726 - g 70 -8.7 -2.75727 | opp_overlap 227725 227725, overlap 227725 CCAACAGTATATAAT TTCTTCCATAT AGG AAATGGAAGAA CATTTATAGTATTTG cysS 227627 - 229039 + | cysteinyl-tRNA synthetase TERM 336 229073 - 229040 - f 95 -10.5 -3.92523 | gap 1, opp_overlap 229047, overlap 229047 AAAAAAATAAATTAA TTAGAT-AGGGCTGCA AAT TGCAGCCCTTATTTAA AGGATGGGATAAATT TERM 337 229047 - 229065 + F 100 -14.6 -3.91716 | opp_overlap 229040 229047 TAAATTAATTAGATA GGGCTGCA AAT TGCAGCCC TTATTTAAAGGATGG TERM 338 229065 - 229047 - f 100 -14.6 -3.04625 | opp_overlap 229047, overlap 229040 TAAATTAATTAGATA GGGCTGCA AAT TGCAGCCC TTATTTAAAGGATGG CLL_A0219 229089 - 229514 + | ribonuclease III TERM 339 230301 - 230291 - g 70 -5.4 -4.53774 | overlap 230293 ATAAATTAATCAAAA TACC TAT GGTA GGCAAGATTAATTCT CLL_A0220 229519 - 230379 + | RNA methyltransferase, TrmH family, group 3 CLL_A0221 230402 - 230914 + | tetracycline resistance protein sigH 231001 - 231621 + | RNA polymerase sigma-H factor TERM 340 232541 - 232515 - g 71 -8.1 -3.26471 | TTACTGGTAGAGGAA CAGTTGCAACT GGTAG AGTTGAAACTG GAATACTTCACGTAG tuf 231833 - 233026 + | translation elongation factor Tu TERM 341 233007 - 233035 + F 90 -12.1 -3.06696 | opp_overlap 233016, overlap 233016 TAGGATCAGGAGTTG TTACTAAAATTAA CGC TTAATTTTAGTAA TATATTAAAGAAGAA TERM 342 233056 - 233078 + F 72 -7.7 -3.53761 | opp_overlap 233056 TAAAGAAGAATAAAT GGACTGGGT GCTAA ACCTGGTCC TTTCAAAGGACGTTG TERM 343 233310 - 233292 - f 72 -6 -4.42976 | overlap 233294 TTAGAAATGAACAAA TATTGCAG ATT CTGCAAAA AGCACACACTTCATA TERM 344 233308 - 233294 - f 76 -8.6 -3.80604 | overlap 233292 AGAAATGAACAAATA TTGCAG ATT CTGCAA AAAGCACACACTTCA secE 233389 - 233619 + | preprotein translocase, SecE subunit nusG 233657 - 234178 + | transcription termination/antitermination factor NusG rplK 234257 - 234682 + | ribosomal protein L11 rplA 234737 - 235426 + | ribosomal protein L1 TERM 345 235562 - 235586 + F 83 -6.5 -5.16237 | opp_overlap 235562, overlap 235536 AGTAAGTTTATTATA GATCTTCTC TGTCTAT GGGAAGATC TTTTTTAATAGAATT CLL_A0229 235637 - 236140 + | ribosomal protein L10 rplL 236198 - 236560 + | ribosomal protein L7/L12 TERM 346 236574 - 236610 + F 72 -8.2 -3.17598 | opp_overlap 236566 236577 236584, overlap 236575 236584 AATTTAATTTCTTAT ATATAAAAAAGGTGCT TATAT AGCACCTTTTTTAAAC TCATTTTATAAAGCT TERM 347 236575 - 236609 + F 85 -11.7 -2.50077 | opp_overlap 236566 236577 236584, overlap 236574 236584 ATTTAATTTCTTATA TATAAAAAAGGTGCT TATAT AGCACCTTTTTTAAA CTCATTTTATAAAGC TERM 348 236607 - 236577 - f 100 -14.3 -2.88579 | opp_overlap 236575 236574 236584, overlap 236566 236584 TTAATTTCTTATATA TAAAAAAGGTGCT TATAT AGCACCTTTTTTA AACTCATTTTATAAA TERM 349 236584 - 236600 + F 90 -8 -5.07053 | opp_overlap 236577 236584, overlap 236575 236574 CTTATATATAAAAAA GGTGCT TATAT AGCACC TTTTTTAAACTCATT TERM 350 236600 - 236584 - f 100 -8 -5.4251 | opp_overlap 236584 236575 236574, overlap 236577 CTTATATATAAAAAA GGTGCT TATAT AGCACC TTTTTTAAACTCATT TERM 351 236615 - 236673 + F 74 -8.7 -3.0976 | opp_overlap 236614 236611 236623 236624, overlap 236612 236623 CTTTTTTAAACTCAT TTTATAAAGCTATATAAAATGTTGATT TATAT AGTAAATATTTTATATAGCTTTATAGC TATTAGAGTGTTAAA TERM 352 236623 - 236665 + F 78 -8.1 -3.9777 | opp_overlap 236614 236611 236623 236624, overlap 236612 236615 AACTCATTTTATAAA GCTATATAAAATGTTGATT TATAT AGTAAATATTTTATATAGC TTTATAGCTATTAGA TERM 353 236863 - 236885 + F 70 -3.4 -5.43514 | opp_overlap 236863 236869 GACGCTATCCGAAAG CATAAGTCCT TAG AGGAAGTATG TTTTTTGGTTATTTT TERM 354 237022 - 237002 - g 71 -7 -3.75418 | opp_overlap 237002 TACAGAAATGCCAAA TCTAATTG AAGTG CAATTAGA TTCGTATCAGTGGTT TERM 355 238238 - 238252 + G 72 -7.2 -4.05033 | opp_overlap 238238 AGAATTATTACAAAA CCAATT CAG AATTGG TTTATCTAGAATGGA TERM 356 238252 - 238238 - g 78 -7.2 -4.51699 | opp_overlap 238238 AGAATTATTACAAAA CCAATT CAG AATTGG TTTATCTAGAATGGA TERM 357 238889 - 238877 - g 70 -6.3 -4.07687 | ACCTTTCCTTGAAAA TGATG ATG CATCA AGAGCTCTTATGGGA rpoB 236925 - 240674 + | DNA-directed RNA polymerase, beta subunit TERM 358 241571 - 241558 - g 73 -5.3 -4.76088 | GAAATGAAAAAAGAA TGCTT CAAG AAGCA GTAGATGCTCTTATT TERM 359 241700 - 241688 - g 74 -6.3 -4.56358 | TAGATTTAGACAAAA CTTAC TTG GTAAG AGAGTTGACTATTCT rpoC 240696 - 244229 + | DNA-directed RNA polymerase, beta' subunit TERM 360 244303 - 244267 - f 71 -5.3 -4.68539 | gap 1, opp_overlap 244267 244270 244271, overlap 244271 ATTAAAATGATAAAA TACAGTTTGTGTGGCT ATTAAA AGCCACGCAAAC-ATA TTTGTTAATAGTACA TERM 361 244270 - 244301 + F 84 -9.5 -3.73445 | opp_overlap 244267 244271, overlap 244267 244271 AAAATGATAAAATAC AGTTTGTGTGGCT ATTAAA AGCCACGCAAACA TATTTGTTAATAGTA TERM 362 244300 - 244271 - f 91 -10.8 -3.52813 | opp_overlap 244270 244267 244271, overlap 244267 AAATGATAAAATACA GTTTGTGTGGCT ATTAAA AGCCACGCAAAC ATATTTGTTAATAGT TERM 363 244271 - 244300 + F 91 -13 -2.83344 | opp_overlap 244271 244267, overlap 244270 244267 AAATGATAAAATACA GTTTGTGTGGCT ATTAAA AGCCACGCAAAC ATATTTGTTAATAGT TERM 364 244318 - 244351 + F 91 -8.4 -5.09204 | opp_overlap 244319 244326, overlap 244319 ATTTGTTAATAGTAC ATCATGAAGATAAA TTAAGT TTTATCTTCATGAG TTTTTATTAAAATGT TERM 365 244350 - 244319 - f 88 -11.9 -2.9155 | opp_overlap 244318 244319, overlap 244326 TTTGTTAATAGTACA TCATGAAGATAAA TTAAGT TTTATCTTCATGA GTTTTTATTAAAATG TERM 366 244319 - 244350 + F 95 -11.9 -3.64438 | opp_overlap 244319 244326, overlap 244318 TTTGTTAATAGTACA TCATGAAGATAAA TTAAGT TTTATCTTCATGA GTTTTTATTAAAATG TERM 367 244774 - 244745 - g 74 -8.8 -3.28712 | opp_overlap 244752, overlap 244752 TGGTGTGGGCCATAA CTTACAAGAACA TAGTGT TGTTCTTATAAG AGGTGGTAGAGTTAA rpsL 244527 - 244904 + | ribosomal protein S12 rpsG 245050 - 245520 + | ribosomal protein S7 TERM 368 245533 - 245556 + F 100 -11.8 -4.45577 | opp_overlap 245533 TAATAGATATATAAA CTGTTTTGGC TTAC GCCAAGACAG TTTTGTCAAATTTAT TERM 369 245556 - 245533 - f 89 -9.6 -4.2109 | opp_overlap 245533 TAATAGATATATAAA CTGTTTTGGC TTAC GCCAAGACAG TTTTGTCAAATTTAT TERM 370 246347 - 246337 - g 73 -5.4 -4.63218 | opp_overlap 246326 GCTGGCTTAAGAAAA GCTA CTA TAGC TAATGAAATTTATCC fusA 245599 - 247665 + | translation elongation factor G TERM 371 248467 - 248441 - g 71 -8.1 -3.26471 | TTACTGGTAGAGGAA CAGTTGCAACT GGTAG AGTTGAAACTG GAATACTTCACGTAG tuf 247759 - 248952 + | translation elongation factor Tu TERM 372 248992 - 249023 + F 100 -16.2 -5.19879 | opp_overlap 248992 248995 AATTAGAATAGTGAA TAAGGTAGAGAAAA GACG TTTTCTCTACCTTA TTTTTATATTTAAAG TERM 373 249023 - 248992 - f 100 -16.2 -3.22841 | opp_overlap 248992, overlap 248995 AATTAGAATAGTGAA TAAGGTAGAGAAAA GACG TTTTCTCTACCTTA TTTTTATATTTAAAG TERM 374 249020 - 248995 - f 100 -13.5 -3.74542 | opp_overlap 248992, overlap 248992 TAGAATAGTGAATAA GGTAGAGAAAA GACG TTTTCTCTACC TTATTTTTATATTTA rpsJ 249430 - 249738 + | ribosomal protein S10 rplC 249811 - 250440 + | ribosomal protein L3 rplD 250466 - 251086 + | ribosomal protein L4/L1 family rplW 251086 - 251382 + | ribosomal protein L23 rplB 251442 - 252275 + | ribosomal protein L2 TERM 375 252376 - 252364 - g 87 -4.8 -5.85737 | AGATCAACAAAAAAA GCAC CTTTT GTGC ATGAAGGACTTTTAA rpsS 252343 - 252621 + | ribosomal protein S19 rplV 252642 - 252977 + | ribosomal protein L22 rpsC 252996 - 253661 + | ribosomal protein S3 rplP 253679 - 254113 + | ribosomal protein L16 rpmC 254113 - 254325 + | ribosomal protein L29 rpsQ 254349 - 254603 + | ribosomal protein S17 rplN 254632 - 255000 + | ribosomal protein L14 rplX 255016 - 255330 + | ribosomal protein L24 rplE 255354 - 255893 + | ribosomal protein L5 rpsN 255910 - 256095 + | ribosomal protein S14p/S29e rpsH 256126 - 256524 + | ribosomal protein S8 TERM 376 256681 - 256643 - g 71 -8.3 -3.28712 | TTCCTGCTGGCATAA CTGTAACTGTAACACCA GACAA CGTTGTTACAGTTAAAG GTCCAAAAGGTGAAT TERM 377 256787 - 256777 - g 79 -6.8 -4.77157 | opp_overlap 256777 256775 CCAAGTGATCAAAAA GCTC ATA GAGC TCTTCATGGTTTAAC CLL_A0253 256597 - 257139 + | 50S ribosomal protein L6 rplR 257158 - 257520 + | ribosomal protein L18 rpsE 257540 - 258037 + | ribosomal protein S5 TERM 378 258124 - 258100 - g 74 -2.2 -5.65177 | gap 1 ATAGGTAGAAAAAAA GAACATATCGC TACT GCAA-ATGCTC TTGGACTTAGAAAGA rpmD 258049 - 258228 + | ribosomal protein L30 rplO 258252 - 258692 + | ribosomal protein L15 TERM 379 259559 - 259535 - g 70 -8.7 -2.68545 | overlap 259529 259534 TTCCTAGAACAATAG CTACTTTTGTT CCA AACAAAAGTTG GGCAATGTGGATTTT CLL_A0258 258694 - 259974 + | preprotein translocase, SecY subunit TERM 380 260091 - 260130 + G 75 -9.7 -2.55351 | gap 1, opp_overlap 260099 260112 260127, overlap 260082 260090 260097 ACCACATATTTCTAC TGGAGATATTTTTAGAAA AAATA TTTCTGAAAATA-CTCCA CTTGGTATGGAAGCA TERM 381 260442 - 260424 - g 71 -8.2 -3.32159 | TCATATTAAATTTAA TCCACCAA CAA TTGATGGA AAATGTAACTTGTGT adk 259999 - 260646 + | adenylate kinase TERM 382 261245 - 261259 + G 74 -8.6 -3.25942 | ATGGAATGGTATTAG CCATAG AAC CTATGG TTAATATGGGAAACT map 260650 - 261399 + | methionine aminopeptidase, type I CLL_A0261 261488 - 261769 + | hypothetical protein infA 261777 - 261995 + | translation initiation factor IF-1 TERM 383 262023 - 261996 - f 84 -8.7 -4.29302 | opp_overlap 262000, overlap 261993 TGGAGAGCAAAATAA GATAGATATAA TAAAAT TTATATCTATC ATCAGAAATATGAGG rpmJ 262049 - 262162 + | ribosomal protein L36 rpsM 262368 - 262736 + | ribosomal protein S13p/S18e rpsK 262756 - 263148 + | ribosomal protein S11 rpsD 263176 - 263796 + | ribosomal protein S4 rpoA 263908 - 264855 + | DNA-directed RNA polymerase, alpha subunit rplQ 264868 - 265209 + | ribosomal protein L17 TERM 384 265216 - 265243 + F 86 -9.2 -4.16943 | opp_overlap 265217, overlap 265217 TTAGTATAACTAATA AGGGGATTAAGT TTAG ACTTAGTCCCCA TTTTAACATATAAAA TERM 385 265217 - 265242 + F 93 -12.7 -3.09844 | opp_overlap 265217, overlap 265216 TAGTATAACTAATAA GGGGATTAAGT TTAG ACTTAGTCCCC ATTTTAACATATAAA TERM 386 265242 - 265217 - f 95 -10.5 -3.86981 | opp_overlap 265217 265216 TAGTATAACTAATAA GGGGATTAAGT TTAG ACTTAGTCCCC ATTTTAACATATAAA CLL_A0269 265462 - 266313 + | cobalt import ATP-binding protein CbiO 3 CLL_A0270 266298 - 267155 + | cobalt import ATP-binding protein CbiO 2 CLL_A0271 267251 - 268054 + | cobalt ABC transporter, permease protein truA 268070 - 268804 + | tRNA pseudouridine synthase A TERM 387 269108 - 269086 - g 82 -6.4 -5.10526 | opp_overlap 269090, overlap 269087 AGAGGAAAAAATAAA CCAACATTTA CAC CAAATGTTGA TTGCGGAGATTTCGT TERM 388 269107 - 269087 - g 71 -7.7 -3.63875 | opp_overlap 269090, overlap 269086 GAGGAAAAAATAAAC CAACATTTA CAC CAAATGTTG ATTGCGGAGATTTCG rplM 268963 - 269397 + | ribosomal protein L13 rpsI 269425 - 269817 + | ribosomal protein S9 TERM 389 269838 - 269860 + F 100 -7 -6.10295 | TATATCTTGCAAAAA GGGGGAGGAA TTA TTTCTCTTCC TTTTTTTTATCTTCA TERM 390 269937 - 269911 - f 89 -9.7 -4.29106 | overlap 269927 TTTTATAGTAATAAA GTATATCATAA AAAAG TTATGATATAC ATAAAAATATCTTTG TERM 391 270051 - 269998 - f 95 -10.1 -4.20024 | opp_overlap 270008 270009 ACAAAAAATATTAAA TTTTATGCTAGTTTTAATATAAAAA TCAT TTTTTTTATTAAAACTAGGTTAAAA ATCACTCTAAAATAT TERM 392 270692 - 270670 - g 100 -13.6 -2.62515 | opp_overlap 270665 AATTGGTTTATAGGA GTTATTGCAG GAG CTGCAATAAC AGCAATACTTCAAAG CLL_A0275 270136 - 271749 + | Na/Pi-cotransporter family protein/PhoU family protein TERM 393 271758 - 271793 + F 100 -10.8 -6.14618 | opp_overlap 271758 TAAATAATTTTATAA CACATCAAATAATA ACTTTAAA TATTATTTGATGTG TTTTTTTATTTTATG TERM 394 271793 - 271758 - f 90 -10.8 -3.4082 | opp_overlap 271758 TAAATAATTTTATAA CACATCAAATAATA ACTTTAAA TATTATTTGATGTG TTTTTTTATTTTATG cwlD 272062 - 272724 + | N-acetylmuramoyl-L-alanine amidase CwlD TERM 395 272731 - 272764 + T 100 -10.7 -5.29885 | gap 1, opp_overlap 272725 272722 272731 AATAAATAAGCTAAA TATCTCAAAATGA-TA AGA TAGTCATTTTGAGATA TTTTATTTTTAAATT TERM 396 272764 - 272731 - T 95 -10.7 -3.91946 | gap 1, opp_overlap 272731, overlap 272725 272722 AATAAATAAGCTAAA TATCTCAAAATGA-TA AGA TAGTCATTTTGAGATA TTTTATTTTTAAATT CLL_A0277 273700 - 272933 - | hypothetical protein CLL_A0278 273835 - 274677 + | fumarase fumB 274934 - 275491 + | fumarate hydratase, class I CLL_A0280 276523 - 275666 - | transporter CLL_A0281 276779 - 277489 + | TPR-repeat-containing protein CLL_A0282 277568 - 278260 + | regulatory protein VanR TERM 397 279092 - 279058 - gf 79 -6.8 -4.65969 | opp_overlap 279060 279085, overlap 279049 279060 279085 AAGAAACAAGTAAAA CATTATTACTATCATT GGG AATAATAATAATAATA TTAATTACTTATCTT TERM 398 279090 - 279060 - gf 72 -7.2 -3.90987 | opp_overlap 279060 279085, overlap 279058 279049 279085 GAAACAAGTAAAACA TTATTACTATCATT GGG AATAATAATAATAA TATTAATTACTTATC CLL_A0283 278232 - 280088 + | sensor histidine kinase TERM 399 280110 - 280143 + F 73 -2.5 -5.64274 | AAATTTATTGATTAA GTGGTTAATTCATAG TAAA TTAGAGATTAACCAC TTTTTTTATAAATAA CLL_A0284 280291 - 282516 + | ribonucleoside-diphosphate reductase, alpha subunit TERM 400 282767 - 282777 + F 73 -6.8 -4.23732 | opp_overlap 282767 282765 ATCAACTAAAAAGTA TGGC GCA GCCA TTTCATTTATATTTA CLL_A0285 282813 - 283847 + | ribonucleoside-diphosphate reductase, beta subunit TERM 401 284371 - 284352 - g 73 -8 -3.34364 | opp_overlap 284351 284352, overlap 284351 AAAGCTATAGAAAAT GTTACAAA TAGC TTTGTAAC TATATTTGAATCTAT TERM 402 284352 - 284371 + G 71 -8 -3.29268 | opp_overlap 284352 284351, overlap 284351 AAAGCTATAGAAAAT GTTACAAA TAGC TTTGTAAC TATATTTGAATCTAT TERM 403 284824 - 284799 - g 80 -4.1 -5.71638 | GAAGAATTAAAAAAA TTAATAGATGT AAAG ACAACTACTAA GTCTGGTAGAAGAAT ptsP 284040 - 285659 + | phosphoenolpyruvate-protein phosphotransferase TERM 404 285686 - 285704 + F 91 -7.4 -5.54907 | opp_overlap 285686 ATTATATATGAGAAA GGTGGAGT TTT ACTCTGCC TTTTTGTTTTATAGA chrA 285901 - 286434 + | chromate transport protein CLL_A0288 286438 - 286962 + | putative chromate transport protein CLL_A0289 287127 - 288395 + | tetratricopeptide repeat domain protein iadA 288441 - 289613 + | beta-aspartyl peptidase TERM 405 289707 - 289673 - T 100 -19 -4.83759 | opp_overlap 289673 AAGTAAATCTAAAAA TAATGACCAATCTAAT TTT ATTAGATTGGTCATTA TTTTTATTAAGATTT TERM 406 289673 - 289707 + T 100 -19 -5.11112 | opp_overlap 289673 AAGTAAATCTAAAAA TAATGACCAATCTAAT TTT ATTAGATTGGTCATTA TTTTTATTAAGATTT CLL_A0291 290343 - 289714 - | spore-cortex-lytic enzyme, sleb CLL_A0292 291399 - 290413 - | hypothetical protein TERM 407 290946 - 290960 + g 78 -7.2 -4.56702 | TTTTAACTCCAGATT CAGATA ATT TATCTG TTTCTTTAGTTAAAG CLL_A0293 291577 - 292446 + | hypothetical protein CLL_A0294 292416 - 293639 + | hypothetical protein TERM 408 293679 - 293637 - f 70 -4.6 -5.04249 | gap 2, opp_overlap 293646 293677, overlap 293633 293641 293646 GTTTTAAAAAATAAA TAATTAAAATAGCCACAACT TATTT AATTGTGGCTATTTT--TTA TGTTATAATCGGTTA TERM 409 293677 - 293641 - f 90 -10.4 -3.33489 | opp_overlap 293646, overlap 293637 293633 293646 TAAAAAATAAATAAT TAAAATAGCCACAACT TATTT AATTGTGGCTATTTTT TATGTTATAATCGGT TERM 410 293672 - 293646 - f 100 -10.3 -4.65969 | opp_overlap 293646, overlap 293641 293637 293633 AATAAATAATTAAAA TAGCCACAACT TATTT AATTGTGGCTA TTTTTTATGTTATAA TERM 411 293646 - 293672 + F 100 -8.1 -5.5208 | opp_overlap 293646 293641 293637 293633 AATAAATAATTAAAA TAGCCACAACT TATTT AATTGTGGCTA TTTTTTATGTTATAA TERM 412 294824 - 294844 + G 75 -8.4 -3.35774 | opp_overlap 294820 294823 294828, overlap 294828 ATGCTAGAAACTTAG CTAATGCT AATTC AGCATTAG TTGTAACAATTTCTA CLL_A0295 293743 - 295338 + | oxidoreductase, FAD-binding TERM 413 295848 - 295822 - g 82 -9.6 -3.35912 | opp_overlap 295823 TAGTAGACACAGCAA CCTTCTTAAGAA GTG TTCTTAACAAGG AAATTGGTCTTAGAA ptb 295512 - 296420 + | phosphate butyryltransferase buk 296444 - 297511 + | butyrate kinase TERM 414 297566 - 297514 - f 95 -11.8 -3.44206 | gap 1, opp_overlap 297524, overlap 297526 TAAGATTTACTAGAA TATATGCCAAGAGGTCATATCAAAA GAAA TTTTGATATGACCTCTTTT-ATATA TATGAATGCCGTGTT TERM 415 297524 - 297557 + F 100 -18.5 -4.64844 | opp_overlap 297514 297526 TAGAATATATGCCAA GAGGTCATATCAAAA GAAA TTTTGATATGACCTC TTTTATATATATGAA TERM 416 297555 - 297526 - f 100 -15.3 -3.09648 | opp_overlap 297524, overlap 297514 GAATATATGCCAAGA GGTCATATCAAAA GAAA TTTTGATATGACC TCTTTTATATATATG CLL_A0298 297838 - 298671 + | HTH DNA-binding protein CLL_A0299 298754 - 299050 + | putative TrpR homolog YerC/YecD TERM 417 299062 - 299096 + F 89 -8.8 -4.57516 | overlap 299064 GTAAATTATTAAATT TTTGCTATAAGTGGTT AAA AATTACTTATAGCATA TTTTAATTTAAATAT TERM 418 299064 - 299094 + F 100 -11.4 -3.88998 | overlap 299062 AAATTATTAAATTTT TGCTATAAGTGGTT AAA AATTACTTATAGCA TATTTTAATTTAAAT glmM 299340 - 300683 + | phosphoglucosamine mutase TERM 419 300727 - 300767 + F 100 -15.1 -5.36441 | opp_overlap 300719 300727 300730 TAATAAATTTATAAA TAACCATCATAAGGTGATT AAA AATCATTTTGTGATGGTTA TTTTTTATATGAAGA TERM 420 300767 - 300727 - f 79 -8.5 -4.05926 | opp_overlap 300727, overlap 300719 300730 TAATAAATTTATAAA TAACCATCATAAGGTGATT AAA AATCATTTTGTGATGGTTA TTTTTTATATGAAGA CLL_A0301 300967 - 302355 + | putative Rhs element Vgr protein CLL_A0302 302369 - 302734 + | hypothetical protein TERM 421 302992 - 302966 - g 82 -8.2 -4.58395 | opp_overlap 302969 302973 TTTATGTTGGAAAAA TAATAGAGCTTA AAA TAAGCTGTATTA ATCATTTATCATACT CLL_A0303 302752 - 304203 + | hypothetical protein CLL_A0304 304234 - 304758 + | hypothetical protein CLL_A0305 304761 - 305387 + | hypothetical protein CLL_A0306 305392 - 306342 + | putative pentapeptide repeat CLL_A0307 306386 - 307387 + | transposase CLL_A0308 307406 - 307708 + | hypothetical protein TERM 422 307871 - 307900 + F 100 -9.5 -5.27399 | opp_overlap 307871 CAGATAAGTTGAAAA GATTAATGTTTCA GTAA TGGAGCATTAATC TTTTTTCATGTGTTG CLL_A0309 308470 - 309285 + | hypothetical protein CLL_A0310 309298 - 309621 + | hypothetical protein CLL_A0311 309642 - 310034 + | hypothetical protein TERM 423 310055 - 310104 + T 100 -11.8 -3.85509 | opp_overlap 310055 310051 310061, overlap 310061 TAGAAAAATTATAAT TAAAAATAGGGCTGATGTTTCT AATCAA AGAGACATTAGCTCTATTTATA TTTAAATTATATTGA TERM 424 310098 - 310061 - T 70 -4.2 -4.95876 | opp_overlap 310061 310055, overlap 310055 310051 AATTATAATTAAAAA TAGGGCTGATGTTTCT AATCAA AGAGACATTAGCTCTA TTTATATTTAAATTA TERM 425 310061 - 310098 + T 95 -10.8 -4.3665 | opp_overlap 310055 310051 310061, overlap 310055 AATTATAATTAAAAA TAGGGCTGATGTTTCT AATCAA AGAGACATTAGCTCTA TTTATATTTAAATTA CLL_A0312 310329 - 310111 - | hypothetical protein CLL_A0313 310343 - 310714 + | putative ribonuclease CLL_A0314 310729 - 311199 + | hypothetical protein TERM 426 311256 - 311294 + F 70 -6.3 -4.19624 | gap 1, opp_overlap 311256 CATTATAATTAAGAA TAGAGCTAATG-ATTTCT AATC AGAGATACATTAACTCTA TTTATATTCAAACTA CLL_A0315 311378 - 311575 + | hypothetical protein CLL_A0316 311631 - 311759 + | hypothetical protein CLL_A0317 311775 - 312095 + | putative erythrocyte membrane protein 1 CLL_A0318 312361 - 312720 + | hypothetical protein TERM 427 313207 - 313197 - g 71 -2.6 -5.52096 | opp_overlap 313197, overlap 313203 AAATCCAATAAAAAA TATA GAT TATA TTAATGATATAAGAA CLL_A0319 312853 - 313914 + | internalin-A TERM 428 313928 - 313957 + F 100 -10.2 -4.7908 | opp_overlap 313928 AAACTTATAATATGA GCTAGTGTTTCT AATTAA AGAAACATTAGC TTTATTTATGTTTTT CLL_A0320 314197 - 314610 + | hypothetical protein TERM 429 314773 - 314744 - f 81 -5.3 -5.32565 | TAACTAATTAAAAAA TATATATTAAAAA GTAT TCCTTAATATATA AGTTTTGTAAAAATA TERM 430 314916 - 314947 + F 100 -9.6 -5.48213 | opp_overlap 314916 ATAAGCGGAGATTAA CCACTTTTTATGAT TTGT ATCATTAAGAGTGG TTTTTGTTTTAAATA ilvN 314985 - 315494 + | acetolactate synthase, small subunit TERM 431 316354 - 316342 - g 71 -4.1 -5.03715 | AGCAGGTGGAAAAAA TGGAA TAT TCCCA GTAGATGATAAGACA leuC 315668 - 316927 + | 3-isopropylmalate dehydratase, large subunit leuD 316942 - 317427 + | 3-isopropylmalate dehydratase, small subunit leuB 317599 - 318681 + | 3-isopropylmalate dehydrogenase TERM 432 320322 - 320301 - g 77 -9.5 -2.91912 | GTACTTAGCTAGATA TGCAAAGCT TGTA AGCTCTGCA AGTGAAGGTGCAATA ilvD 318688 - 320346 + | dihydroxy-acid dehydratase TERM 433 320352 - 320370 + F 71 -5.4 -4.58663 | overlap 320351 ATTAAAGTAATGTTC TATGTTTT AAC AAAGCATA TTTTTAAAACATAGT TERM 434 320605 - 320592 - g 70 -8.1 -2.96249 | overlap 320589 TGTCATGAACAAGCA GCTGC ACAT GCAGC AGATGGATATGCAAG TERM 435 322051 - 322071 + G 79 -9.7 -3.19653 | AAAAAGTTTTTCCTA TGGTTGCAC CTG GTGCACCCA TTAATCAACTTATAA ilvB 320433 - 322106 + | acetolactate synthase, large subunit, biosynthetic type TERM 436 322641 - 322618 - g 76 -8.2 -3.86346 | opp_overlap 322624, overlap 322619 GTAGGGCTTTAGAAA CTGCACTTGC ATAT GCAAATGCAA TTGGTGGAGCAAGAG TERM 437 322640 - 322619 - g 77 -9.5 -2.91593 | opp_overlap 322624, overlap 322618 TAGGGCTTTAGAAAC TGCACTTGC ATAT GCAAATGCA ATTGGTGGAGCAAGA ilvC 322128 - 323144 + | ketol-acid reductoisomerase CLL_A0328 323994 - 324251 + | GIY-YIG domain protein CLL_A0329 324295 - 325293 + | transcriptional regulator, LacI family TERM 438 325278 - 325310 + F 79 -8.7 -3.4853 | opp_overlap 325281, overlap 325275 325279 325281 TAACTTAGTAGTTAG AGATTCAATAAAATA ATA TGTTTTATTGAATCA TATATGTTTTTTTTG TERM 439 325279 - 325309 + F 88 -12.2 -2.66678 | opp_overlap 325281, overlap 325278 325275 325281 AACTTAGTAGTTAGA GATTCAATAAAATA ATA TGTTTTATTGAATC ATATATGTTTTTTTT TERM 440 325281 - 325307 + F 73 -9 -2.8337 | opp_overlap 325281, overlap 325279 325278 325275 CTTAGTAGTTAGAGA TTCAATAAAATA ATA TGTTTTATTGAA TCATATATGTTTTTT CLL_A0330 325604 - 327268 + | glycosyl hydrolase, family 13 TERM 441 327358 - 327345 - g 74 -3.9 -5.22943 | opp_overlap 327345 ATGAAAGCGAAAAAA GAAAA GTTA TTTTC ATTTGAATTTTGGCA CLL_A0331 327330 - 328988 + | pts system, iibc component TERM 442 329708 - 329689 - g 75 -3.6 -5.5604 | TTAAGTAATAAAAAA TTAGATGT AATA ACTTCTAA AGTAATCTTTAATGG CLL_A0332 328993 - 329781 + | endonuclease/exonuclease/phosphatase family protein TERM 443 329825 - 329800 - T 100 -10.6 -5.1517 | opp_overlap 329800 AAAATAAATCAAAAA TAAGACGGAT GATTTT ATCCGTCTTA TTTTTTTTCTATTTT TERM 444 329800 - 329825 + T 100 -11.3 -6.18768 | opp_overlap 329800 AAAATAAATCAAAAA TAAGACGGATG ATTT TATCCGTCTTA TTTTTTTTCTATTTT CLL_A0333 330314 - 329823 - | MarR-family transcriptional regulator CLL_A0334 330616 - 331842 + | efflux transporter, RND family, MFP subunit TERM 445 332785 - 332759 - g 71 -3.9 -5.02201 | gap 1, overlap 332764 AAAACAGTAGAAAAA CTTA-ATTCAGA AAAT CCTGAATATAAG ATTGAGATAGTTAAT CLL_A0335 331847 - 335050 + | cation/multidrug efflux pump TERM 446 335263 - 335251 - g 72 -3.4 -5.1963 | opp_overlap 335260 TTGAATGAAGAAAAA CAAG ATATG CTTG AAGAAAAAGATGATT CLL_A0336 335077 - 336234 + | putative multidrug efflux pump, outer membrane protein TERM 447 336333 - 336365 + F 100 -15.1 -3.56836 | opp_overlap 336333 ATAGTCCAATTATAA TGCCACTTAACTTAT TGC ATATGTTAAGTGGCA TTTAAAACATAGTTT TERM 448 336365 - 336333 - f 100 -15.1 -3.52093 | opp_overlap 336333 ATAGTCCAATTATAA TGCCACTTAACTTAT TGC ATATGTTAAGTGGCA TTTAAAACATAGTTT TERM 449 337495 - 337467 - g 76 -9.1 -3.13908 | overlap 337480 337481 AATCTAAGTATCCAA TTGCATATTATAA CTA TTATAATATGCCA AAGACTTTTACAGAT CLL_A0337 336746 - 337792 + | S-layer protein TERM 450 338243 - 338227 - f 82 -9.5 -3.31196 | opp_overlap 338223 TGAAAGTTACACTAA CCAAATC ATA GATTTGG AAGGTTATTTGCCCG TERM 451 339114 - 339100 - g 76 -7.2 -4.32034 | GTAGGATTAGGAAAA GATGAA TCA TTCATC GCATCAGATATTCCT glmS 338548 - 340374 + | glutamine-fructose-6-phosphate transaminase (isomerizing) TERM 452 340476 - 340428 - f 80 -9.2 -3.15592 | opp_overlap 340430, overlap 340427 340430 AATTTTTATCAAAAT TATATGAGGCTAGTCATTTTAA TAAAT TTAAAATGACTAGTCTTATATT TATGTAAAGGGCGAT TERM 453 340474 - 340430 - f 93 -11.8 -3.13504 | opp_overlap 340430, overlap 340428 340427 TTTTTATCAAAATTA TATGAGGCTAGTCATTTTAA TAAAT TTAAAATGACTAGTCTTATA TTTATGTAAAGGGCG TERM 454 340430 - 340474 + F 100 -16.2 -4.03234 | opp_overlap 340430 340428 340427 TTTTTATCAAAATTA TATGAGGCTAGTCATTTTAA TAAAT TTAAAATGACTAGTCTTATA TTTATGTAAAGGGCG CLL_A0339 340498 - 341172 + | cyclic nucleotide-binding domain protein TERM 455 341295 - 341306 + F 86 -4.4 -5.93809 | overlap 341289 TTGGATACATATTTT GTAC CAAG GTAC TTTTTTTTATAAAGA TERM 456 341389 - 341377 - f 79 -4.9 -5.50313 | opp_overlap 341377 GATAAAACTAAAAAA GATAT TTG ATATC TTAAGTAATATTATT CLL_A0340 341425 - 342768 + | mate efflux family protein TERM 457 343053 - 343037 - f 73 -6.7 -4.27316 | opp_overlap 343037 TGTTTTAATTGAAAA CTTATAT TTT ATATAAG TATGATAGAATATAA TERM 458 343090 - 343071 - f 70 -5.2 -4.76963 | overlap 343064 TGATAGAATATAAAA TAAATTTA TAAA TAAATTTA ACGATTACTTTAGTG TERM 459 343117 - 343146 + F 82 -2.3 -6.24157 | AGTGATTGAGAGAAA GTATGAAATAATT TAAG GATTATTTTGTGC TTTTTTTTTATACAT CLL_A0341 343326 - 344849 + | phosphoglucomutase/phosphomannomutase family protein TERM 460 344878 - 344907 + F 87 -6.7 -5.31091 | opp_overlap 344877 344878 AAATTATATTTAAAG CTATATATCAT TTAATATC ATGATATATAG TTTTCTTTTATTGTA TERM 461 345607 - 345625 + G 78 -6 -4.89567 | overlap 345599 345609 AGCAGTAGTAGCATC GACAGATG CAG CATCTGTA TTTTCTATTTTAAGA TERM 462 345609 - 345623 + G 80 -8.6 -4.05763 | overlap 345599 345607 CAGTAGTAGCATCGA CAGATG CAG CATCTG TATTTTCTATTTTAA CLL_A0342 345230 - 346642 + | cell volume regulation protein A TERM 463 346706 - 346746 + F 100 -10.2 -5.19879 | gap 1, opp_overlap 346714, overlap 346711 AATTAAATATATGTG TTATAGGATTATATTAAGT GTAA GCTTAATATAATCCT-TAA TTTTTATGTTTAAAG TERM 464 346711 - 346742 + F 100 -12.6 -3.95047 | opp_overlap 346714, overlap 346706 AATATATGTGTTATA GGATTATATTAAGT GTAA GCTTAATATAATCC TTAATTTTTATGTTT TERM 465 346751 - 346776 + F 73 -7.1 -4.01888 | opp_overlap 346762 ATAATCCTTAATTTT TATGTTTAAAG TATA TTTTAAACATA TTTATCATATAAAGT TERM 466 347173 - 347145 - f 81 -7.7 -4.38203 | CATATAATTAATAAA TTTTTATAGTTAC GAT GTAAATATAAAAA TAAAAATTAATTTAT CLL_A0343 347231 - 347992 + | formate/nitrite transporter family protein TERM 467 348004 - 348036 + F 100 -10.1 -5.49568 | opp_overlap 348004 ATAAGATTACAAAAA GTGTTTTAGATAATT TTA AATTAGCTAAGACAC TTTTTATTTTGAATT TERM 468 348036 - 348004 - f 90 -7.9 -4.9934 | opp_overlap 348004 ATAAGATTACAAAAA GTGTTTTAGATAATT TTA AATTAGCTAAGACAC TTTTTATTTTGAATT CLL_A0344 348150 - 348554 + | hypothetical protein TERM 469 348620 - 348575 - T 73 -6.5 -4.2074 | opp_overlap 348577 348582, overlap 348582 GGTTTAATATAGAAA TAAAAAATTAGAAATAACTTT TTAT ATAGATATTTCTAATTTTGTA GTATTAAAATAAGGA TERM 470 348613 - 348582 - T 82 -4.6 -5.76237 | opp_overlap 348577 348582, overlap 348575 TATAGAAATAAAAAA TTAGAAATAACTTT TTAT ATAGATATTTCTAA TTTTGTAGTATTAAA CLL_A0345 349205 - 348645 - | carbonate dehydratase CLL_A0346 349456 - 350037 + | 5-formyltetrahydrofolate cyclo-ligase TERM 471 350262 - 350294 + F 95 -7.3 -5.93809 | gap 1, opp_overlap 350293 AATTTGTTTTCACTA GCTATTTCTC-TAT CTTTAA ATAGGAGAAATAGC TTTTTTTTATAAAAA CLL_A0347 350357 - 351622 + | O-acetylhomoserine aminocarboxypropyltransferase/cysteine synthase family protein thrS 353798 - 351867 - | threonyl-tRNA synthetase TERM 472 353880 - 353852 - R 100 -11.1 -6.14618 | opp_overlap 353852 TACAAAATAAAAAAA CTCCGTCTCTAAA ATA TATAGAGACGAAG TAATATCCGTGGTTC TERM 473 353852 - 353880 + r 72 -8.9 -2.6574 | opp_overlap 353852 TACAAAATAAAAAAA CTCCGTCTCTAAA ATA TATAGAGACGAAG TAATATCCGTGGTTC CLL_A0349 354605 - 354192 - | hypothetical protein TERM 474 354793 - 354762 - H 83 -3.8 -5.85178 | AATATTTAAAAAAAA TCTCAAGTGTTACA TTTT TGAAACAATTAAGA TTAAGTTTTGAAAAG TERM 475 355142 - 355184 + G 90 -5.8 -5.5762 | opp_overlap 355150 TACCAAACCACATAT TCTTAAAATTGCTAAAAATT ATG GATTATTAGCAATTCAAAGA TTTTTTATATTTGAT CLL_A0350 354861 - 355421 + | glycerol-3-phosphate responsive antiterminator glpT 355533 - 356861 + | glycerol-3-phosphate transporter TERM 476 356869 - 356853 - f 72 -5.9 -4.42653 | overlap 356865 ATTGCAGCTAGAAAA GCTAACT AAC AGTTAAC CAATTAAACTGATTA TERM 477 356982 - 356951 - f 100 -11.8 -4.91873 | opp_overlap 356951 TATATTAATGAAAAA GTATCTTTTCAGAC AGAA GTTTGAAAAGATAC TTTTTTATTTTTTTA TERM 478 356951 - 356982 + F 100 -14 -6.12458 | opp_overlap 356951 TATATTAATGAAAAA GTATCTTTTCAGAC AGAA GTTTGAAAAGATAC TTTTTTATTTTTTTA TERM 479 357153 - 357129 - f 95 -10.3 -4.12599 | opp_overlap 357129 357131, overlap 357119 AACAATTTGTTAAAA TAGTATTATAT ACT ATATAATACTA TTAAACAGATGGAAT TERM 480 357131 - 357151 + F 71 -8.5 -3.02511 | opp_overlap 357129 357119, overlap 357129 CAATTTGTTAAAATA GTATTATAT ACT ATATAATAC TATTAAACAGATGGA TERM 481 357783 - 357772 - g 73 -3 -5.48303 | opp_overlap 357772 AGAATTGGAAAAAAA GATA GGTG TATC TTTAGAAGAATGGAA CLL_A0352 357290 - 357886 + | hypothetical protein TERM 482 357959 - 357914 - T 95 -10.7 -3.88001 | opp_overlap 357911, overlap 357910 357917 CTTTATAAAAATTAA TAAGGGTTACTAGAATTTATT TTAA AAAATTTTCTAGTAACCCTTA AAATATTATTTTTTA TERM 483 357956 - 357917 - T 77 -8 -4.0498 | opp_overlap 357911, overlap 357914 357910 TATAAAAATTAATAA GGGTTACTAGAATTTATT TTAA AAAATTTTCTAGTAACCC TTAAAATATTATTTT ispF 358438 - 357965 - | 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase CLL_A0354 358893 - 359924 + | hypothetical protein CLL_A0355 360982 - 360062 - | polysaccharide deacetylase family protein TERM 484 361130 - 361107 - H 75 -9 -3.18033 | opp_overlap 361106, overlap 361105 TACAACTTATCAACA TTATCCACAA TTGC CTGTGGATAA CCTGTTATAAATTTA CLL_A0356 361299 - 361952 + | hypothetical protein CLL_A0357 362019 - 362867 + | transporter CLL_A0358 364045 - 362999 - | radical SAM domain protein TERM 485 364142 - 364105 - R 100 -12.3 -5.40625 | opp_overlap 364108 364127 364129 364141 ATACTATATAAAAAA TAAGAGTTAAAGGACAA GACT TTGCCATTTAACTCTTA ATGGTATTATTTAAA CLL_A0359 366852 - 364183 - | cation-transporting ATPase, P-type TERM 486 366780 - 366790 + g 70 -6.8 -3.93583 | CTTTTATTTGTTCTT CGGT AAG ACCG TTTATGGATACATTA TERM 487 367005 - 366962 - H 100 -21.6 -5.87996 | opp_overlap 366964 366973 366976 TAATGAATAAAAAAA GACTTTTAATATAATTTCAG AATT CTGAAATTATATTAAAAGTC TCGTCACCACAAAGG TERM 488 366964 - 367003 + H 100 -18.4 -2.78384 | opp_overlap 366962, overlap 366973 366976 ATGAATAAAAAAAGA CTTTTAATATAATTTCAG AATT CTGAAATTATATTAAAAG TCTCGTCACCACAAA TERM 489 366973 - 366994 + H 74 -8.9 -3.05521 | opp_overlap 366962, overlap 366964 366976 AAAAGACTTTTAATA TAATTTCAG AATT CTGAAATTA TATTAAAAGTCTCGT CLL_A0360 367228 - 367926 + | transcriptional regulator, FadR family TERM 490 367974 - 368016 + T 100 -16.9 -5.93809 | opp_overlap 367974 367987, overlap 368004 AATATCAAACAAGAA GTTTCTATAAAAATAAAAA CAAAA TTTTTATTTTTATAGAAAC TTTTTTTTGTAGAAA TERM 491 368016 - 367974 - T 100 -17.6 -4.15114 | opp_overlap 367974 368004, overlap 367987 AATATCAAACAAGAA GTTTCTATAAAAATAAAAAC AAA ATTTTTATTTTTATAGAAAC TTTTTTTTGTAGAAA TERM 492 368009 - 367987 - T 73 -5.8 -4.84017 | opp_overlap 367974 368004, overlap 367974 AAGTTTCTATAAAAA TAAAAACAAA ATT TTTATTTTTA TAGAAACTTTTTTTT TERM 493 368179 - 368203 + T 72 -8.7 -2.58708 | opp_overlap 368179, overlap 368178 368189 368192 368194 AATATATAATAATAA TTGTAAGTGGT AGT ACCAATTACAA ATTGGTATGATATGT TERM 494 368203 - 368179 - T 82 -8.7 -4.09374 | opp_overlap 368179 368178 368189 368192 368194 AATATATAATAATAA TTGTAAGTGGT AGT ACCAATTACAA ATTGGTATGATATGT TERM 495 368192 - 368210 + T 72 -9 -2.7535 | opp_overlap 368179 368205, overlap 368179 368178 368189 368194 AATTGTAAGTGGTAG TACCAATT ACA AATTGGTA TGATATGTTACCAAA CLL_A0361 368370 - 368218 - | hypothetical protein CLL_A0362 368385 - 368516 + | lactate permease CLL_A0363 368543 - 369331 + | electron transfer flavoprotein, beta subunit/FixA family protein CLL_A0364 369434 - 370624 + | electron transfer flavoprotein, alpha subunit/FixB family protein CLL_A0365 370629 - 372032 + | FAD/FMN-containing dehydrogenase TERM 496 372064 - 372094 + F 100 -12.8 -5.36441 | opp_overlap 372067, overlap 372067 TATAAATTTTTTTAT AAAGAGTGTATCAA ATT TTGATACACTCTTG TTTTTTCTCTGCAGA TERM 497 372091 - 372067 - f 100 -14.5 -3.8709 | opp_overlap 372067 372064 AAATTTTTTTATAAA GAGTGTATCAA ATT TTGATACACTC TTGTTTTTTCTCTGC TERM 498 372067 - 372091 + F 100 -14.5 -4.77122 | opp_overlap 372067, overlap 372064 AAATTTTTTTATAAA GAGTGTATCAA ATT TTGATACACTC TTGTTTTTTCTCTGC TERM 499 372247 - 372225 - f 70 -2.8 -5.56264 | opp_overlap 372205 TTTAAATATAAAAAA TCTAGTTTCT GAT AAAAAATAGA ATTCAACGTAAATAA CLL_A0366 372614 - 373456 + | phospholipase, patatin family TERM 500 373697 - 373686 - g 71 -4.4 -4.8743 | TTGAAAATAAAGAAA CTGA TGAA TCAG CAGAATTATATGATA TERM 501 374251 - 374227 - g 80 -8.7 -4.07306 | ATATGGAATTATAAA TACTAAGGATG TTA CATCATTAGTA CAAAGGTATGATATA CLL_A0367 373625 - 374839 + | SEC-C motif domain protein TERM 502 374909 - 374933 + F 95 -10.2 -4.323 | opp_overlap 374912 ATCAGTTATGTACAG GAACTACTTA TTTAT TAAGTAGTTC TTTTAAGTCTTTAAA CLL_A0368 375053 - 376120 + | putative mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase CLL_A0369 376394 - 376975 + | hypothetical protein TERM 503 376988 - 377009 + F 100 -8.9 -6.36459 | opp_overlap 376992, overlap 376985 TAATTAGATTTTTAA GAAACTTAT TCTT ATAAGTTTC TTTTTTTTTGTTGCA CLL_A0370 377104 - 377469 + | cadmium efflux system accessory protein cadA 377487 - 379754 + | cadmium-translocating P-type ATPase TERM 504 379803 - 379833 + F 75 -9.3 -2.70044 | gap 1, opp_overlap 379803, overlap 379802 379801 379806 ATAATAAAACAATAA TAAGAGCAGTTCAT TATT AT-AACTGCTCTTA AATTTTTATAAAATA TERM 505 379833 - 379803 - f 89 -9.3 -4.33214 | gap 1, opp_overlap 379803 379802 379801 379806 ATAATAAAACAATAA TAAGAGCAGTTCAT TATT AT-AACTGCTCTTA AATTTTTATAAAATA CLL_A0372 380146 - 380778 + | redox-sensing transcriptional repressor rex TERM 506 380877 - 380902 + F 75 -7.7 -3.84271 | opp_overlap 380875 380877, overlap 380893 AAGAAAAGAAAGATA TTGATTGCATA TTTT TTTGCAATCAA TTGTTAATATTATAA TERM 507 380902 - 380877 - f 72 -7.7 -3.58719 | opp_overlap 380877 380893, overlap 380875 AAGAAAAGAAAGATA TTGATTGCATA TTTT TTTGCAATCAA TTGTTAATATTATAA crt 381125 - 381907 + | 3-hydroxybutyryl-CoA dehydratase CLL_A0374 381987 - 383126 + | acyl-coa dehydrogenase, short-chain specific CLL_A0375 383146 - 383928 + | electron transfer flavoprotein, beta subunit/FixA family protein CLL_A0376 383951 - 384958 + | electron transfer flavoprotein, alpha subunit/FixB family protein TERM 508 384993 - 385031 + F 71 -7.1 -3.88583 | gap 1, overlap 384996 AATTATTATAGATTT TAGTCCTTAATTAAAAGA TAGC TCTTTTAATGAAGGA-TA TTTATAAAACATTTA TERM 509 384996 - 385029 + F 95 -11.3 -3.52678 | overlap 384993 TATTATAGATTTTAG TCCTTAATTAAAAGA TAGC TCTTTTAATGAAGGA TATTTATAAAACATT TERM 510 385269 - 385250 - g 78 -8 -4.04773 | opp_overlap 385254, overlap 385242 385254 GAAGAAGTTAAAGAA GAAATTCT TTCA AGAATTTC AGGAACTACTGATAT TERM 511 385439 - 385425 - g 71 -8.6 -2.77899 | overlap 385422 385430 CTTCTTTATCAATCA CTGAAG TTG CTTCAG CAACTAAGAGAGCTG CLL_A0377 385061 - 385909 + | 3-hydroxybutyryl-coa dehydrogenase TERM 512 385923 - 385945 + F 100 -12.8 -6.04419 | AAGATTACATTTTTG GACTCAAGCA TTA TGCTTGGGTC TTTTTTTGTTATTTT TERM 513 385958 - 385986 + F 79 -4.1 -5.75822 | overlap 385962 GTCTTTTTTTGTTAT TTTTTATTAAAAT TTT GTTTTAATATAAA TTTTTTTGCTTTATG CLL_A0378 386073 - 386507 + | hypothetical protein TERM 514 387367 - 387378 + G 71 -4.4 -4.82901 | opp_overlap 387375 TGTATGGGTTAAACG TGCA ATGA TGCA TTTTTATAACGCAGA CLL_A0379 386582 - 387508 + | 8-oxoguanine DNA glycosylase CLL_A0380 387667 - 389151 + | iron-dependent hydrogenase TERM 515 389187 - 389169 - f 100 -9.6 -5.12707 | opp_overlap 389169 TTAAATTGCAAAAAA GAAGCCCT TTT AGGACTTC TTTTTTTGTAAATAA TERM 516 389169 - 389187 + F 93 -7.4 -5.64274 | opp_overlap 389169 TTAAATTGCAAAAAA GAAGCCCT TTT AGGACTTC TTTTTTTGTAAATAA CLL_A0381 389349 - 390044 + | alkaline phosphatase synthesis transcriptional regulatory proteinphoP TERM 517 391163 - 391141 - g 74 -2 -5.72622 | overlap 391143 391146 CGGATAAAGAAAAAA CAGAACAAGT TAT ACTTAATCTA TTAGATAATGCAATT CLL_A0382 390048 - 391463 + | two-component sensor histidine kinase CLL_A0383 391488 - 392327 + | hypothetical protein TERM 518 393186 - 393176 - g 70 -5.4 -4.62803 | opp_overlap 393176 GGAAAGAATAAGAAA GCTT CTG AAGC ATTTATGAATTATTG CLL_A0384 392348 - 393385 + | ABC transporter, substrate-binding protein TERM 519 393700 - 393732 + F 82 -9.3 -3.34522 | opp_overlap 393699 393698, overlap 393701 393703 GATATTATAATAATT GTATTAGCACTCAAT GCT ATCGAGTGCTAATAG TTAATTAAAAAATAT TERM 520 393701 - 393731 + F 90 -12.8 -2.60392 | opp_overlap 393699 393698, overlap 393700 393703 ATATTATAATAATTG TATTAGCACTCAAT GCT ATCGAGTGCTAATA GTTAATTAAAAAATA TERM 521 393703 - 393729 + F 85 -11 -2.84098 | opp_overlap 393699 393698, overlap 393701 393700 ATTATAATAATTGTA TTAGCACTCAAT GCT ATCGAGTGCTAA TAGTTAATTAAAAAA groS 393778 - 394062 + | chaperonin GroS groL 394076 - 395698 + | chaperonin GroL TERM 522 395710 - 395727 + F 100 -9.9 -6.04378 | opp_overlap 395710 TTAATGAATAAAAAA GACTACC AGTT GGTAGTC TTTTTTTTATGCTTT TERM 523 395727 - 395710 - f 100 -9.9 -5.5604 | opp_overlap 395710 TTAATGAATAAAAAA GACTACC AGTT GGTAGTC TTTTTTTTATGCTTT TERM 524 395964 - 395954 - g 82 -2.6 -6.02345 | opp_overlap 395954 TAAGTATAAAAAAAA TAAA GGA TTTA CTTTATTAGAACTTA TERM 525 396161 - 396149 - g 84 -3.5 -5.86609 | TGAAAAAAATAAAAA TATAT CTA ATATA AAAGATGATAAAAGT CLL_A0387 395913 - 396317 + | putative pilin TERM 526 396534 - 396563 + F 100 -8 -6.24157 | opp_overlap 396534 396560, overlap 396507 396502 TTTGAGATATATTAA CGTATTAACTTC ACTTAC GGAGTTAATGCG TTTTTTTTTATACAT TERM 527 397868 - 397850 - g 78 -9 -3.28966 | GGATCAAAAGATAGA TATTTCCA AGA TGGAAATA AAAAGTTAGTACCAG guaB 396653 - 398107 + | inosine-5'-monophosphate dehydrogenase TERM 528 398414 - 398425 + G 71 -4.4 -4.85129 | overlap 398420 AAGCTATATTTGAAT TAGG TGTA CCTA TTTTTGGTATATGCT guaA 398194 - 399735 + | GMP synthase TERM 529 399741 - 399782 + T 100 -13.9 -4.1523 | opp_overlap 399743, overlap 399743 GTTTGAATAATACAC AAGAGCCAAGAAATGCC AAATTCAC GGCGTTTCTTGGCTCTC TTTATGTCTCGTGAC TERM 530 399780 - 399743 - T 100 -15 -3.76835 | opp_overlap 399741 399743 TTGAATAATACACAA GAGCCAAGAAATGCCA AATTCA CGGCGTTTCTTGGCTC TCTTTATGTCTCGTG TERM 531 399743 - 399780 + T 100 -16.5 -3.67067 | opp_overlap 399743, overlap 399741 TTGAATAATACACAA GAGCCAAGAAATGCC AAATTCAC GGCGTTTCTTGGCTC TCTTTATGTCTCGTG CLL_A0390 400004 - 399861 - | hypothetical protein TERM 532 400084 - 400135 + H 90 -9.8 -3.71792 | opp_overlap 400098 400100, overlap 400087 GGTCAATTGAGTCAC TTCATGCTGTAATATAGTCATTTG AATA TAAATGACTATATTACAGAAATAA TTACTTTTGAATTAA TERM 533 400087 - 400132 + H 90 -11.5 -2.94735 | opp_overlap 400098 400100, overlap 400084 CAATTGAGTCACTTC ATGCTGTAATATAGTCATTTG AATA TAAATGACTATATTACAGAAA TAATTACTTTTGAAT CLL_A0391 400338 - 401258 + | methicillin resistance protein MecR1 CLL_A0392 401665 - 402828 + | FliB domain protein TERM 534 403373 - 403341 - g 70 -6.5 -4.15657 | opp_overlap 403352 GGATAATTATACAAA TGCATTTTCAATTCT TAA AGAATTTAAAATGAA GGCAACTATGTTTAT CLL_A0393 402916 - 403767 + | polysaccharide deacetylase family protein TERM 535 403884 - 403844 - f 87 -6.5 -5.28683 | gap 1, opp_overlap 403844 ATGAATATTAAAAAA TAGTTGAATTTTGTG-TA TTTAAT TATCACAAACTTCAACTA TTTTTTATTTACAAA TERM 536 403844 - 403884 + F 90 -6.5 -5.63517 | gap 1, opp_overlap 403844 ATGAATATTAAAAAA TAGTTGAATTTTGTGTAT TTAATT AT-CACAAACTTCAACTA TTTTTTATTTACAAA TERM 537 403941 - 403911 - f 86 -9.4 -3.87354 | opp_overlap 403901 403904 403907 403911 403916, overlap 403901 403904 403916 403938 CAAACTTATATTAAA TATAATATTTATTA AAT TAACAAATATTATA TTTCGAACATACTAT CLL_A0394 403991 - 404464 + | hypothetical protein TERM 538 404536 - 404510 - f 95 -11 -3.52475 | opp_overlap 404510 TTTAATATATTATAA GAGGGTTTATAC TTT GTATAAACTCTC TTTTTTAATAAAAAT TERM 539 404510 - 404536 + F 100 -13.2 -5.14965 | opp_overlap 404510 TTTAATATATTATAA GAGGGTTTATAC TTT GTATAAACTCTC TTTTTTAATAAAAAT TERM 540 405046 - 405036 - g 74 -4 -5.18995 | opp_overlap 405036, overlap 405028 AATAGAAGACAAAAA CAAA AAT TTTG TCAATTAAATAATCC TERM 541 406709 - 406699 - g 71 -4 -5.17507 | AAAAGCTAATAAAAA GTAA AAA TTAC AAAGAATTTAAAGAG CLL_A0395 404778 - 406742 + | putative transcription antiterminator CLL_A0396 406746 - 407162 + | glucitol operon activator protein CLL_A0397 407194 - 407754 + | PTS system, glucitol/sorbitol-specific, IIC component CLL_A0398 407837 - 408208 + | glucitol/sorbitol-specific phosphotransferase enzyme iib component CLL_A0399 408257 - 408823 + | PTS system, glucitol/sorbitol-specific, IIBC component TERM 542 409201 - 409185 - g 90 -3.7 -5.96219 | opp_overlap 409189, overlap 409189 TACTTAGAAAAAAAA GAAATTG CAC CAATTGC CGTTGGTACAATCTT TERM 543 409212 - 409189 - g 89 -6.1 -5.39407 | opp_overlap 409189, overlap 409185 TAGAAAAAAAAGAAA TTGCACCAA TTGCCG TTGGTACAA TCTTAAAAATAATAA CLL_A0400 408870 - 409235 + | putative PTS system, glucitol/sorbitol-specific IIA component TERM 544 409516 - 409506 - g 80 -5.4 -5.28176 | opp_overlap 409506 TGGAGGGATAAAAAA TGAC AAA GTCA TGGTTAAATTTAGAA CLL_A0401 409505 - 410326 + | sorbitol-6-phosphate 2-dehydrogenase TERM 545 410439 - 410403 - f 100 -15.5 -4.50993 | opp_overlap 410405 410405 410411, overlap 410411 TCAAATAAATATAAA CATTAAAAGTTCCTTAT AAT ATTAGGAACTTTTAATG CTATAAAGAGAATTT TERM 546 410405 - 410437 + F 88 -12.3 -2.62263 | opp_overlap 410403 410411, overlap 410405 410411 AAATAAATATAAACA TTAAAAGTTCCTTAT AAT ATTAGGAACTTTTAA TGCTATAAAGAGAAT TERM 547 410431 - 410411 - f 75 -6.9 -4.5394 | opp_overlap 410405 410411 410405, overlap 410403 ATATAAACATTAAAA GTTCCTTAT AAT ATTAGGAAC TTTTAATGCTATAAA TERM 548 410411 - 410431 + F 73 -6.9 -4.33274 | opp_overlap 410403 410411, overlap 410405 410405 ATATAAACATTAAAA GTTCCTTAT AAT ATTAGGAAC TTTTAATGCTATAAA CLL_A0402 410486 - 411154 + | putative transaldolase TERM 549 411176 - 411231 + F 100 -13.3 -4.33997 | gap 1, opp_overlap 411176 411186 411190, overlap 411219 AAAAGAGTAAAGTTA TTTTTAATTAT-AAAGTAGATAGATT TATAT AATCTGTCTACTTTAATAATTAAGAA TTATTGTTTTTAGTA TERM 550 411231 - 411176 - f 72 -8.9 -2.72733 | gap 1, opp_overlap 411176 411219, overlap 411186 411190 AAAAGAGTAAAGTTA TTTTTAATTAT-AAAGTAGATAGATT TATAT AATCTGTCTACTTTAATAATTAAGAA TTATTGTTTTTAGTA TERM 551 411220 - 411186 - f 81 -10.3 -2.72463 | opp_overlap 411176 411219, overlap 411176 411190 AGTTATTTTTAATTA TAAAGTAGATAGATT TATAT AATCTGTCTACTTTA ATAATTAAGAATTAT TERM 552 411216 - 411190 - f 71 -6.7 -4.05714 | opp_overlap 411176, overlap 411186 411176 ATTTTTAATTATAAA GTAGATAGATT TATAT AATCTGTCTAC TTTAATAATTAAGAA TERM 553 411571 - 411552 - g 76 -4.4 -5.33785 | gap 1, opp_overlap 411552 411557, overlap 411557 AAGCAGCAGAAAAAA TACAATCTG ATT CAGAT-GTA TTGATAGTTATAGGA pgi 411344 - 412693 + | glucose-6-phosphate isomerase TERM 554 412742 - 412711 - g 71 -8.8 -2.81604 | opp_overlap 412714, overlap 412710 412714 TATGAAAATCATAAT TGATGGAGATGCCT GCCC AGGTATCTCCATTA TTGAAAAAGTGGCTA TERM 555 412714 - 412739 + G 100 -12.7 -3.62046 | opp_overlap 412711 412710 412714 GAAAATCATAATTGA TGGAGATGCCT GCCC AGGTATCTCCA TTATTGAAAAAGTGG TERM 556 412739 - 412714 - g 81 -10.5 -2.65876 | opp_overlap 412714, overlap 412711 412710 GAAAATCATAATTGA TGGAGATGCCT GCCC AGGTATCTCCA TTATTGAAAAAGTGG TERM 557 412956 - 412973 + G 72 -7.1 -3.96148 | opp_overlap 412956 AGAAAGCAAGAGTAA TAAATCC AAAG GGATTTA TTTATGATGAAAACA TERM 558 413126 - 413114 - g 70 -4.9 -4.79075 | opp_overlap 413114 AAAAACTTAATAAAA CTAAT TGA ATTAG TTAATAAAAATATAT CLL_A0404 412697 - 413143 + | Emg2 protein TERM 559 413141 - 413158 + F 95 -5.6 -6.13 | opp_overlap 413141 413139 GTTAATAAAAATATA TAGAGG AGAATA CCTCTA TTTTTTTTTCAGTAT CLL_A0405 413295 - 415322 + | two component regulator three Y motif protein CLL_A0406 415484 - 416224 + | lytic murein transglycosylase TERM 560 416268 - 416243 - f 100 -12.1 -5.72053 | opp_overlap 416243 GAACCAAATAAAAAA GTGAAGTTATT TAAT AATAACTTCAC TTTTTTTTGCGTTAT TERM 561 416243 - 416268 + F 100 -12.1 -5.87688 | opp_overlap 416243 GAACCAAATAAAAAA GTGAAGTTATT TAAT AATAACTTCAC TTTTTTTTGCGTTAT rluB 416439 - 417155 + | ribosomal large subunit pseudouridine synthase B TERM 562 417329 - 417352 + F 95 -6 -6.11229 | gap 1, opp_overlap 417329 417328 TGCTTATTGCTAAAG CGCAA-CCTAG CCC CAAGGGTTGCG TTTTTTTGTTTTCAT TERM 563 417452 - 417395 - f 100 -17.9 -4.67353 | opp_overlap 417405 417407 417409, overlap 417428 TTACTTAGGGAAAAA TTTTATTTAATATATAAAAAACATA AAATATAG TATGTTTTTTATATATTAAATAAAA AAAATAAATAGAAAA TERM 564 417405 - 417442 + F 74 -8.9 -3.05463 | opp_overlap 417395 417428, overlap 417407 417409 AAAAATTTTATTTAA TATATAAAAAACATA AAATATAG TATGTTTTTTATATA TTAAATAAAAAAAAT TERM 565 417468 - 417521 + F 87 -6.3 -5.71295 | opp_overlap 417472, overlap 417472 AAAATAAATAGAAAA AAAGTGAAGGATTTGAGTTGTTTTT TTAT AAATATGACTGAAATCCTTCATTTA TTTTTGTTTTTATAT TERM 566 417472 - 417517 + F 100 -9.3 -5.21459 | opp_overlap 417472, overlap 417468 TAAATAGAAAAAAAG TGAAGGATTTGAGTTGTTTTT TTAT AAATATGACTGAAATCCTTCA TTTATTTTTGTTTTT CLL_A0408 417694 - 419946 + | helicase, UvrD/Rep family TERM 567 420290 - 420265 - g 70 -5.6 -4.3487 | gap 1, opp_overlap 420265 ACACACAAGGGAAAA CTTTGGAGCTT GGATA AAGCTC-AAAG TTTAGATGAAATAAA ligA 420034 - 422037 + | DNA ligase, NAD-dependent gatC 422408 - 422701 + | glutamyl-tRNA(Gln) amidotransferase, C subunit CLL_A0411 422720 - 424177 + | glutamyl-tRNA(Gln) amidotransferase subunit A TERM 568 424228 - 424240 + G 70 -6.3 -4.21908 | opp_overlap 424222 424228 GTCATAGGATTAGAA GTTCA TGC TGAAC TTTTAACTAATACTA gatB 424198 - 425628 + | glutamyl-tRNA(Gln) amidotransferase, B subunit TERM 569 425652 - 425683 + T 100 -14.7 -5.34365 | opp_overlap 425652 ATTAGCAATAAAAAA CCTACTATGAAAC TAAAAT GTTTCATAGTAGG TTTTTCTTATTCTAA TERM 570 425683 - 425652 - T 100 -14.7 -5.52023 | opp_overlap 425652 ATTAGCAATAAAAAA CCTACTATGAAAC TAAAAT GTTTCATAGTAGG TTTTTCTTATTCTAA CLL_A0413 425989 - 425690 - | hypothetical protein TERM 571 427194 - 427215 + G 76 -8.9 -3.06302 | opp_overlap 427188 GGAAGACTATTCTTA TTCAAATGA AAAA TCATTTGAA TTAGCTGAAGGTAGT CLL_A0414 426256 - 427737 + | putative extracellular solute-binding protein TERM 572 427745 - 427794 + T 71 -6.8 -4.16279 | gap 1, opp_overlap 427753, overlap 427750 427753 TAAAATAGTTTAATA TAGATTAAGGCTATATCAATGGT AATAC ATCAATGATATAGCCTT-ATATA TTTTACAATACTGTA TERM 573 427750 - 427790 + T 100 -13.6 -3.41366 | opp_overlap 427753, overlap 427745 427753 TAGTTTAATATAGAT TAAGGCTATATCAATGGT AATAC ATCAATGATATAGCCTTA TATATTTTACAATAC TERM 574 427787 - 427753 - T 82 -9.4 -3.37895 | opp_overlap 427750 427745 427753 TTTAATATAGATTAA GGCTATATCAATGGTA ATA CATCAATGATATAGCC TTATATATTTTACAA TERM 575 427753 - 427787 + T 95 -10.9 -3.83378 | opp_overlap 427753, overlap 427750 427745 TTTAATATAGATTAA GGCTATATCAATGGT AATAC ATCAATGATATAGCC TTATATATTTTACAA CLL_A0415 428919 - 427810 - | hypothetical protein CLL_A0416 429194 - 429400 + | hypothetical protein rph 429716 - 430465 + | ribonuclease PH TERM 576 430946 - 430956 + G 77 -5.4 -5.01422 | GGAGATGATGGCTTT GGAT ATG ATCC TTTATTTTTATATAG rdgB 430469 - 431086 + | non-canonical purine NTP pyrophosphatase, RdgB/HAM1 family CLL_A0419 431098 - 431577 + | phosphodiesterase, family TERM 577 431703 - 431673 - f 85 -9.9 -3.24633 | overlap 431671 AGATATTGTAGAATA GTCATTGTCGTCA GGAGA TAACAACAATGAC TCCGGGGTGTGGCGC TERM 578 431934 - 431920 - f 70 -7.8 -3.322 | opp_overlap 431914 AGCTGGATAGAGCAA CGCCCT TCT AAGGCG TGGGCCAGGGGTTCG TERM 579 433049 - 433029 - f 71 -8.3 -3.05343 | opp_overlap 433030 CGTATATCGGTAATA CTCCAGCCT TCC AAGCTGGAA AGGTGGGTTCGATTC TERM 580 433086 - 433101 + F 100 -7.6 -6.28967 | opp_overlap 433086 CCCGCTCCATTTAAA CAACTG ATAA CAGTTG TTTTTTTTATTTATA TERM 581 433101 - 433086 - f 72 -7.6 -3.64703 | opp_overlap 433086 CCCGCTCCATTTAAA CAACTG ATAA CAGTTG TTTTTTTTATTTATA TERM 582 433214 - 433248 + F 100 -14.7 -6.04419 | opp_overlap 433211 433206 433220 CCATAAACATAGTGA TACCAATAGTTTATA GACAG TATAAACTATTGGTA TTTTTTTGTTCTTTT CLL_A0437 433493 - 433648 + | hypothetical protein TERM 583 435327 - 435314 - f 72 -8.1 -3.21912 | CTCTTAATCGAGGAA GTCGC TTCG GCGAC AGGAAGACAGGTGGT TERM 584 435817 - 435798 - f 75 -9.2 -2.65808 | opp_overlap 435801 435804, overlap 435795 435810 AGTCGTAACAAGGTA GCCGTAGG AGAA CCTGCGGC TGGATCACCTCCTTT TERM 585 436546 - 436561 + F 73 -9 -2.79915 | opp_overlap 436543 436546, overlap 436548 GAATGAGGAAACTCA CATGGG AAAC CCCATG TATCGTAAAGTGAAT TERM 586 436561 - 436546 - f 72 -9 -2.69489 | opp_overlap 436546 436548, overlap 436543 GAATGAGGAAACTCA CATGGG AAAC CCCATG TATCGTAAAGTGAAT TERM 587 436705 - 436688 - f 76 -8.5 -3.695 | GGGAAAGAGCCCAAA CCAAAGA TTTA TCTTTGG GGTTGCGGACAGAAC TERM 588 436872 - 436857 - f 81 -10.4 -2.71011 | ACCTTGTGGGAAGCA GGGAGG ACCA CCTCCC AAGGCTAAATACTAC TERM 589 436946 - 436935 - f 75 -7.2 -4.2354 | GAAAGGTGAAAAGAA CCCC GGGA GGGG AGTGAAATAGAACCT TERM 590 437182 - 437172 - f 71 -6.8 -4.15453 | opp_overlap 437175 GAAGCGAGGGTAAAA CCTC GTG GAGG ACCGAACCACGTTGC TERM 591 437771 - 437755 - f 74 -8.7 -3.05343 | CCCACAGGCCGAATA CCTAAGG TTT CCTCAGG AAGGTTCGTCCGCTG TERM 592 439359 - 439378 + F 70 -8 -3.36452 | AATTTATGTGCAATT TTGAAAGA ACAT TCTTTCAA TTAATATTCCGCGAT TERM 593 439477 - 439491 + F 100 -6.4 -6.11243 | opp_overlap 439477 TTTGATATTACTAAA GTCGAT TTA ATCGGC TTTTTTTTATTGCCT TERM 594 439532 - 439511 - f 77 -7.5 -4.09685 | opp_overlap 439511 TTTTATTGCCTAAAA TTATTTACA TATA TGTAAATAA TCTGTAACAAAAGTA TERM 595 439857 - 439840 - g 100 -5.7 -6.47325 | opp_overlap 439840 AAAAAATAAAAAAAA GAAAATA GTAT TATTTTC TTCAATAGTTTTAGT CLL_A0443 439787 - 440734 + | polysaccharide deacetylase family protein TERM 596 440764 - 440780 + F 100 -9.5 -5.58179 | opp_overlap 440764 TTATAAATATATAAA GAGACTT TTG AAGTCTC TTTTTTATTATAATA TERM 597 440780 - 440764 - f 89 -9.5 -4.31166 | opp_overlap 440764 TTATAAATATATAAA GAGACTT TTG AAGTCTC TTTTTTATTATAATA CLL_A0444 440836 - 441525 + | alkaline phosphatase synthesis transcriptional regulatory proteinphoP TERM 598 441549 - 441537 - g 70 -4.9 -4.79384 | opp_overlap 441537 ATAATAAAATGAAAA GTATT AAA AATAC ATTAATTAGAAGCTT CLL_A0445 441530 - 442927 + | alkaline phosphatase synthesis sensor protein PhoR CLL_A0446 442924 - 444378 + | putative lipoprotein CLL_A0447 444568 - 445950 + | TldD protein CLL_A0448 445954 - 447297 + | TldD/PmbA family protein TERM 599 447417 - 447444 + T 100 -11.5 -5.65927 | opp_overlap 447417 AATAGACATAAAAAA TAGAAGGACTA ATTTTA TAGTCCTTCTA TTTTTTATTTAGCTA TERM 600 447444 - 447417 - T 100 -11.5 -5.46276 | opp_overlap 447417 AATAGACATAAAAAA TAGAAGGACTA ATTTTA TAGTCCTTCTA TTTTTTATTTAGCTA CLL_A0449 449353 - 447503 - | sulfatase CLL_A0450 449536 - 450114 + | hypothetical protein TERM 601 450967 - 450947 - g 77 -7.7 -4.20491 | opp_overlap 450947 450946 450949, overlap 450945 450962 ATATTAATAAAAATA CATTTGTTC CAG AAACAAATG ATTTTGAGACTTCTA gidA 450145 - 451101 + | tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA CLL_A0451 451661 - 451098 - | lipolytic enzyme, G-D-S-L CLL_A0453 452294 - 451677 - | endodeoxyribonuclease, RusA family protein TERM 602 452369 - 452332 - H 70 -5.9 -4.29432 | opp_overlap 452334 452342, overlap 452337 452353 TAAACTTCATTAAAA TATAATTATACTATATA AAAA TATATAGTATAATAGTA ACTTATACAATAATG TERM 603 452364 - 452337 - H 93 -10.2 -3.99481 | opp_overlap 452334 452342, overlap 452332 452353 TTCATTAAAATATAA TTATACTATATA AAAA TATATAGTATAA TAGTAACTTATACAA CLL_A0454 452497 - 453516 + | putative O-sialoglycoprotein endopeptidase CLL_A0455 453519 - 454523 + | hypothetical protein TERM 604 454603 - 454559 - f 100 -14.8 -4.71708 | opp_overlap 454560, overlap 454560 AATAATAAATGAAAA TTATGGGATATTAATATATA GTGCA TATATATTAATATCCCATAT TTTTATATTGACATT TERM 605 454602 - 454560 - f 100 -18.3 -3.40585 | opp_overlap 454560, overlap 454559 ATAATAAATGAAAAT TATGGGATATTAATATATA GTGCA TATATATTAATATCCCATA TTTTTATATTGACAT TERM 606 454560 - 454602 + F 100 -18.3 -5.09762 | opp_overlap 454560 454559 ATAATAAATGAAAAT TATGGGATATTAATATATA GTGCA TATATATTAATATCCCATA TTTTTATATTGACAT TERM 607 454831 - 454795 - g 87 -2.4 -6.12458 | opp_overlap 454800 454811 454815, overlap 454797 454800 GAAAAAAAGAAAAAA TATAATTACTAGTGTA GCAAT TTCACTAGCAATTGCA TTAGTTGGTGGAATT TERM 608 455236 - 455221 - g 70 -7.6 -3.38782 | overlap 455219 455231 GATTAAAGTAGAAGA TGGAAC TAAA GTTCCA GCAGTTGCTGAACTA CLL_A0456 454688 - 455875 + | trypsin domain protein TERM 609 455917 - 455888 - f 100 -15.3 -4.14243 | opp_overlap 455888 TAGTTTATTTCAAAA GCTCTGTTTAATT TAAG AATTAAACAGAGC TTTTTTTAATATATT TERM 610 455888 - 455917 + F 100 -15.3 -5.62219 | opp_overlap 455888 TAGTTTATTTCAAAA GCTCTGTTTAATT TAAG AATTAAACAGAGC TTTTTTTAATATATT CLL_A0457 456037 - 456456 + | hypothetical protein TERM 611 456558 - 456581 + F 80 -6.1 -5.16133 | opp_overlap 456558 TTTTGTTTATAAAAA GTCTTCTTT TATAAT AAAGGAGAC TTTTTATGTTATACT CLL_A0458 456783 - 457865 + | ethanolamine transporter CLL_A0459 457891 - 459027 + | putative solute-binding protein CLL_A0460 460151 - 459030 - | mannosyltransferase B TERM 612 459080 - 459100 + g 76 -8.3 -3.76226 | TTTTTATTGCTGCTT GCCTCCA TGTAAAT TGGAGGC TTCTATTATACCCTT TERM 613 460696 - 460714 + G 75 -6 -4.63486 | opp_overlap 460690 460700, overlap 460697 AATAAATGATAGGAT GCAACCTA GGA TAGGTTGG TTTTCTTGGGAAGAT TERM 614 460697 - 460713 + G 82 -9.5 -3.3761 | opp_overlap 460690 460700, overlap 460696 ATAAATGATAGGATG CAACCTA GGA TAGGTTG GTTTTCTTGGGAAGA TERM 615 460789 - 460813 + G 95 -11.7 -3.36073 | opp_overlap 460788 460795, overlap 460792 460795 GATAAGTCAAAAGGC TAATAAGTCAA ATT TTGACTTATTA TATTTAAAAAATATA TERM 616 460792 - 460810 + G 82 -9 -3.81755 | opp_overlap 460788 460795, overlap 460789 460795 AAGTCAAAAGGCTAA TAAGTCAA ATT TTGACTTA TTATATTTAAAAAAT CLL_A0461 460298 - 461314 + | spore coat protein, CotS family CLL_A0462 461334 - 462059 + | hypothetical protein TERM 617 462816 - 462790 - g 80 -8.2 -4.11869 | opp_overlap 462795 GAAAAAATGGACAAA CTATATCATTAT GTC ATAATGATTTAG CATATCATAATTTTT CLL_A0463 462153 - 463196 + | spore coat protein, CotS family TERM 618 463238 - 463282 + T 93 -11.8 -3.19285 | gap 1, opp_overlap 463231 463247, overlap 463247 TAATTGAATTTAGAA TAC-TAAAAAGCTGTCTCAAA ATTA TTTGAGCCAGCTTTTTAAGTG TGTATGTTTAAAATA TERM 619 463272 - 463247 - T 100 -10.5 -4.90906 | opp_overlap 463247 463238 TTAGAATACTAAAAA GCTGTCTCAAA ATTA TTTGAGCCAGC TTTTTAAGTGTGTAT TERM 620 463247 - 463272 + T 100 -10.5 -4.73448 | opp_overlap 463247, overlap 463238 TTAGAATACTAAAAA GCTGTCTCAAA ATTA TTTGAGCCAGC TTTTTAAGTGTGTAT CLL_A0464 464544 - 463402 - | mannosyltransferase B TERM 621 465160 - 465133 - g 100 -6.6 -5.69068 | gap 1, overlap 465159 GAAAAATATAAAAAA TGATTTT-GATAT GAT ATATCTAAAATCA GTAGAATTCTACAGG TERM 622 465263 - 465253 - g 75 -5.4 -4.95547 | TGCAGAAGAAGAAAA GACA TTT TGTC ATCATGATTTTACTT CLL_A0465 464654 - 465655 + | spore coat protein CotS TERM 623 465710 - 465674 - f 100 -11.2 -4.80882 | opp_overlap 465675, overlap 465675 ATGTGATAGGAAAAA GTCCTATTAATATAAG TTTTT CTTATATTAATAGGAT TTATTTTATTGTATA TERM 624 465709 - 465675 - f 100 -14.7 -3.47806 | opp_overlap 465675, overlap 465674 TGTGATAGGAAAAAG TCCTATTAATATAAG TTTTT CTTATATTAATAGGA TTTATTTTATTGTAT TERM 625 465675 - 465709 + F 100 -14.7 -4.94168 | opp_overlap 465675 465674 TGTGATAGGAAAAAG TCCTATTAATATAAG TTTTT CTTATATTAATAGGA TTTATTTTATTGTAT CLL_A0466 465856 - 466719 + | sporulation peptidase YabG CLL_A0467 466908 - 467150 + | protein veg TERM 626 467168 - 467152 - f 89 -9.5 -4.2772 | opp_overlap 467152 CGCAATCAATATAAA CTTCGAT TAA ATCGAAG TTTTTTTTATTTAAA TERM 627 467152 - 467168 + F 100 -9.5 -6.23545 | opp_overlap 467152 CGCAATCAATATAAA CTTCGAT TAA ATCGAAG TTTTTTTTATTTAAA TERM 628 467241 - 467222 - f 80 -6.6 -5.02502 | TATATTACAGAAAAA TTTCTTTA TATA TAAAGAAA CAATAAGATGTGTAA TERM 629 467308 - 467284 - f 100 -8.7 -6.18768 | opp_overlap 467291 AAAATATAAAAAAAA GAAAGATGG TGGGTTT CCATCTTTC AACTATGGTATAAAA CLL_A0468 467564 - 469126 + | LysM domain protein TERM 630 469287 - 469239 - f 100 -15 -3.72989 | opp_overlap 469250, overlap 469250 AAATGTAGATTGAAA TAATAGAAAAAGGCTTCATTAT ACTCA ATAATGAAGCCTTTTTCTTTTT TTTTGAATAATTATT TERM 631 469276 - 469250 - f 100 -12.5 -5.23765 | opp_overlap 469250, overlap 469239 GAAATAATAGAAAAA GGCTTCATTAT ACTCA ATAATGAAGCC TTTTTCTTTTTTTTT TERM 632 469250 - 469276 + F 100 -12.5 -5.99318 | opp_overlap 469239 469250 GAAATAATAGAAAAA GGCTTCATTAT ACTCA ATAATGAAGCC TTTTTCTTTTTTTTT CLL_A0469 469351 - 470196 + | cyanophycinase cphA 470168 - 472786 + | cyanophycin synthetase TERM 633 473708 - 473721 + G 74 -2.4 -5.56568 | ATGAGTGGAAGCGGT CCAA CAGTAT TTGG TTTTTTTGATGATAT ispE 472967 - 473809 + | 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase spoIIR 473871 - 474497 + | stage II sporulation protein R CLL_A0473 474535 - 475527 + | argininosuccinate synthase CLL_A0474 475592 - 476014 + | hypothetical protein TERM 634 476413 - 476395 - g 77 -3.2 -5.626 | opp_overlap 476397, overlap 476399 GATTTTAGAAAAAAA TATTTTGA AAT TCAAGATA ATATAGATAGAATAG CLL_A0475 476140 - 476439 + | hypothetical protein TERM 635 477490 - 477478 - g 74 -4.9 -5.03145 | TAATGGTTGAAAAAA TTAAG AGT CTTAA AGAAAAAGTTGAAAT pyrG 476625 - 478226 + | CTP synthase TERM 636 478278 - 478223 - f 100 -13.8 -5.19275 | opp_overlap 478229 478234, overlap 478224 478227 ATCTATAAAACAAAA GTAACATAAAAGAAGAGTTTTCTTTC TTGA AAAAGAAGACTCTTCTTTTATATTAG AATAATTATATATTT TERM 637 478277 - 478224 - f 100 -17.3 -3.69938 | opp_overlap 478229 478234, overlap 478223 478227 TCTATAAAACAAAAG TAACATAAAAGAAGAGTTTTCTTTC TTGA AAAAGAAGACTCTTCTTTTATATTA GAATAATTATATATT TERM 638 478274 - 478227 - f 100 -14.6 -3.94607 | opp_overlap 478229 478234, overlap 478224 478223 ATAAAACAAAAGTAA CATAAAAGAAGAGTTTTCTTTC TTGA AAAAGAAGACTCTTCTTTTATA TTAGAATAATTATAT TERM 639 478229 - 478272 + F 100 -16.5 -3.08283 | opp_overlap 478227 478224 478223, overlap 478234 AAAACAAAAGTAACA TAAAAGAAGAGTTTTCTTT CTTGAA AAAGAAGACTCTTCTTTTA TATTAGAATAATTAT TERM 640 478234 - 478267 + F 100 -12 -4.67608 | opp_overlap 478227 478224 478223, overlap 478229 AAAAGTAACATAAAA GAAGAGTTTTCTTT CTTGAA AAAGAAGACTCTTC TTTTATATTAGAATA TERM 641 478575 - 478552 - f 80 -6.2 -5.10665 | opp_overlap 478552 AGCTAATAAATAAAA TTATTATGAT TTTT ATCACAATAA TTTATTTGTCAATTT rho 478609 - 480234 + | transcription termination factor Rho TERM 642 480280 - 480254 - T 100 -8.2 -5.5074 | opp_overlap 480254 TAAGTTAATAAAAAA TAAGTAGAAATT TTA AGTTTCTACTTA TTTTTATTTATTAAA TERM 643 480254 - 480280 + T 100 -10.4 -5.47159 | opp_overlap 480254 TAAGTTAATAAAAAA TAAGTAGAAATT TTA AGTTTCTACTTA TTTTTATTTATTAAA CLL_A0478 481380 - 480274 - | putative monogalactosyldiacylglycerol synthase TERM 644 480846 - 480875 + g 72 -5.1 -4.93454 | opp_overlap 480861, overlap 480841 480850 480870 TTTTAGTGTAAAAAA TTTTCTTTATAGG AATA CCTATAGGGTAAA TTTTATCTTTATTTA TERM 645 481518 - 481487 - R 84 -5.2 -5.65927 | gap 1, opp_overlap 481487, overlap 481492 481493 TATGTAAATAAAAAA GAAAATGGGAAAGAC TAA GTCTTTCCC-TTAAC GTTCTATTTAGTATC TERM 646 481514 - 481492 - R 100 -10.6 -5.58051 | opp_overlap 481487, overlap 481487 481493 AAATAAAAAAGAAAA TGGGAAAGAC TAA GTCTTTCCCT TAACGTTCTATTTAG TERM 647 481513 - 481493 - R 100 -14.1 -3.8934 | opp_overlap 481487, overlap 481492 481487 AATAAAAAAGAAAAT GGGAAAGAC TAA GTCTTTCCC TTAACGTTCTATTTA rpmE 481731 - 481522 - | ribosomal protein L31 tdk 481909 - 482496 + | thymidine kinase TERM 648 482685 - 482698 + G 81 -3.1 -5.82172 | AAATTTTTAAATATT CCTTT TCTG AGAGG TTTTTTTATATTAAT CLL_A0481 482526 - 483434 + | modification methylase, HemK family TERM 649 483923 - 483910 - g 71 -3.9 -5.10968 | opp_overlap 483902, overlap 483902 ATTAATATAGAAAAA TCTAA TATT TTAGA TAGAGCAAGTTTTAT hemK 483427 - 484290 + | protein-(glutamine-N5) methyltransferase, release factor-specific prfA 484556 - 485638 + | peptide chain release factor 1 TERM 650 485672 - 485695 + F 80 -8.2 -4.21194 | opp_overlap 485662 485672 AGACATTATTTAAGA GCCTTGCATT TTAG AATGTGAGGC TTTTAAATAATAGGG TERM 651 486186 - 486165 - g 95 -8.9 -4.97824 | AAAATCCAAATAAAA CTTACTATT TTCA AATAGTAAG AAAAGGCGGATTAAA CLL_A0484 485780 - 486307 + | hypothetical protein TERM 652 486363 - 486348 - g 72 -4.8 -4.98436 | CCAATATTATAAAAA TCAATA ATAT TATTGA TGATGAAGAAAAGAT CLL_A0485 486326 - 487375 + | Sua5/YciO/YrdC/YwlC family protein rpiB 487499 - 487948 + | ribose 5-phosphate isomerase B upp 487994 - 488623 + | uracil phosphoribosyltransferase TERM 653 488649 - 488681 + F 100 -10.2 -4.41177 | gap 1, opp_overlap 488649 TATAGTACTACAAAA GGAGTATC-TTAAAT AAAA ATTTAAAGATACTCC TTTTAAATTTATCTG TERM 654 488681 - 488649 - f 100 -10.2 -4.49981 | gap 1, opp_overlap 488649 TATAGTACTACAAAA GGAGTATC-TTAAAT AAAA ATTTAAAGATACTCC TTTTAAATTTATCTG CLL_A0488 488738 - 489232 + | deoxycytidylate deaminase CLL_A0489 489360 - 490508 + | UDP-N-acetylglucosamine 2-epimerase TERM 655 491769 - 491743 - g 72 -3.7 -5.22943 | opp_overlap 491743, overlap 491745 491747 ATGAAATGGAAAAAA GAGATGCTAAA AAAGG TTTAGCAACAC TTTGTATAGGTGGAG CLL_A0490 490638 - 491819 + | acetyl-CoA acetyltransferase TERM 656 491849 - 491874 + F 100 -12.1 -5.73339 | opp_overlap 491849 TTACTCTTAGAAAAA TTGCTATGATT ATAT AATCATAGCAA TTTTTTTATACTTAT TERM 657 491874 - 491849 - f 100 -12.1 -4.84359 | opp_overlap 491849 TTACTCTTAGAAAAA TTGCTATGATT ATAT AATCATAGCAA TTTTTTTATACTTAT TERM 658 491940 - 491928 - f 70 -3.5 -5.34555 | GTATATTATAAAAAA TAATT AGG AATTA AAATTAATAAAGTGA TERM 659 492193 - 492157 - f 100 -9.8 -4.386 | opp_overlap 492156 492155 GAAGGTTTTACAAAA CTAATGTTAAAGTATT TAAAT AATATTTTAACATTAG ACTTTATAAAGGATA TERM 660 492242 - 492258 + F 86 -5.3 -5.67063 | opp_overlap 492251 TTTTTAAAATGTACT TATAATA AAT TATTATA TTTTTTTATAATAAA TERM 661 492597 - 492552 - f 93 -6.5 -5.94214 | opp_overlap 492557 492574, overlap 492553 AAGATAATAAAAAAA TTCAATAAATAAGTTTAATAA AGTT TAATAAAACTTATTTATTGAT GTAAAATAATCATTG TERM 662 492596 - 492553 - f 93 -10 -4.12868 | opp_overlap 492557 492574, overlap 492552 AGATAATAAAAAAAT TCAATAAATAAGTTTAATAA AGTT TAATAAAACTTATTTATTGA TGTAAAATAATCATT TERM 663 492657 - 492640 - f 73 -2.8 -5.7506 | opp_overlap 492640 TAAAAAAAAAGAAAA TATTCA AAAAAA TGAATA TTCTGATAATTGCAA TERM 664 493145 - 493135 - g 74 -4 -5.24531 | opp_overlap 493131 493135 ACCTTTTATAAAAAA TGTA GAA TACA TTTCTTTTTATATGT TERM 665 493135 - 493145 + G 71 -4 -5.02777 | opp_overlap 493135, overlap 493131 ACCTTTTATAAAAAA TGTA GAA TACA TTTCTTTTTATATGT CLL_A0491 492863 - 493228 + | hypothetical protein TERM 666 493648 - 493674 + G 71 -8.2 -3.29461 | overlap 493622 493650 AAGGTTTTGGACATC CATTTATAGGTA TGT TACCTATAAATA TTATGGAAAGAGTTA TERM 667 493650 - 493672 + G 90 -10.8 -3.21395 | overlap 493648 GGTTTTGGACATCCA TTTATAGGTA TGT TACCTATAAA TATTATGGAAAGAGT atpB 493230 - 493910 + | ATP synthase F0, A subunit atpE 493943 - 494158 + | ATP synthase F0, C subunit atpF 494209 - 494688 + | ATP synthase F0, B subunit TERM 668 494955 - 494940 - g 77 -6.2 -4.76892 | opp_overlap 494942, overlap 494947 494949 ATATTAATTGAAAAA GATAGA ATAC TCTATC TTAGAGAAAAATTAA atpH 494691 - 495230 + | ATP synthase F1, delta subunit atpA 495241 - 496755 + | ATP synthase F1, alpha subunit TERM 669 496751 - 496772 + F 85 -10.3 -3.02371 | opp_overlap 496750 496751 496753, overlap 496747 496747 496753 496755 TATTTTTACAAGAAG CATAGCTTA GTTT TAAGCTATG TCCTTCTTTAGGAGG TERM 670 496772 - 496751 - f 82 -10.3 -2.87622 | opp_overlap 496751 496747 496747 496753 496755, overlap 496750 496753 TATTTTTACAAGAAG CATAGCTTA GTTT TAAGCTATG TCCTTCTTTAGGAGG atpG 496796 - 497647 + | ATP synthase F1, gamma subunit atpD 497663 - 499054 + | ATP synthase F1, beta subunit TERM 671 499050 - 499037 - f 73 -5.3 -4.8543 | GAAGCTGTACAAAAA GCTAA AAGT TTAGC ATAGGGAGATGATTA atpC 499068 - 499472 + | ATP synthase F1, epsilon subunit TERM 672 499499 - 499476 - f 72 -5.2 -4.97312 | opp_overlap 499476 AAAATGAATTAAAAA GCTTGAGAGG ATAT CCTCTTGAGC TTTTTTTAAAGTTTT TERM 673 499476 - 499499 + F 100 -9.6 -5.51165 | opp_overlap 499476 AAAATGAATTAAAAA GCTTGAGAGG ATAT CCTCTTGAGC TTTTTTTAAAGTTTT CLL_A0500 499630 - 500268 + | hypothetical protein TERM 674 500297 - 500315 + F 70 -7.6 -3.30441 | opp_overlap 500286, overlap 500271 500301 AAAACATAATTTATT TTAATTGT TTA ACAATTAA TTATGGAGGATAATA murA 500330 - 501592 + | UDP-N-acetylglucosamine 1-carboxyvinyltransferase TERM 675 501623 - 501594 - f 90 -10.9 -3.22068 | opp_overlap 501591 501598, overlap 501598 GAATAGATGTATGAA TAAAGGGTGAGAA TAAA TTCTTACCCTTTA AAATTATATTTTTAC TERM 676 501598 - 501619 + F 84 -9.5 -3.72485 | opp_overlap 501598 501594, overlap 501591 AGATGTATGAATAAA GGGTGAGAA TAAA TTCTTACCC TTTAAAATTATATTT TERM 677 501619 - 501598 - f 75 -7.3 -4.26202 | opp_overlap 501591 501598, overlap 501594 AGATGTATGAATAAA GGGTGAGAA TAAA TTCTTACCC TTTAAAATTATATTT spoIID 501710 - 502747 + | stage II sporulation protein D TERM 678 502742 - 502732 - f 73 -2.6 -5.64421 | overlap 502737 AGTTGAAATAAAAAA TATA ACA TATA AATAATTAAAATTTA TERM 679 502795 - 502829 + F 100 -14.6 -6.34616 | opp_overlap 502795 TAAATTATAGAAAAA CAAGCCATATTATTTA TTT TTAATAATATGGCTTG TTTTTTTTATTTTCC TERM 680 502829 - 502795 - f 100 -14.6 -5.06585 | opp_overlap 502795 TAAATTATAGAAAAA CAAGCCATATTATTTA TTT TTAATAATATGGCTTG TTTTTTTTATTTTCC TERM 681 503202 - 503185 - g 89 -6.3 -5.38497 | AGGTAAATGAAAAAA CTGCTTC TAAG GAAACAG CTAAAAGTGTTGCTT CLL_A0503 502920 - 503645 + | conserved membrane-associated protein TERM 682 503705 - 503673 - f 95 -12.3 -3.75863 | opp_overlap 503677 503680, overlap 503674 503680 AAAATTCTTACCAAA TGAATAACTCAATAA TTA TTATTGAGTTATTCT TGAAATATTATTTTA TERM 683 503704 - 503674 - f 100 -15.8 -2.84795 | opp_overlap 503677 503680, overlap 503673 503680 AAATTCTTACCAAAT GAATAACTCAATAA TTA TTATTGAGTTATTC TTGAAATATTATTTT TERM 684 503677 - 503701 + F 95 -11.7 -3.68704 | opp_overlap 503674 503673 503680, overlap 503680 TTCTTACCAAATGAA TAACTCAATAA TTA TTATTGAGTTA TTCTTGAAATATTAT TERM 685 503698 - 503680 - f 81 -9 -3.91541 | opp_overlap 503677 503680, overlap 503674 503673 TTACCAAATGAATAA CTCAATAA TTA TTATTGAG TTATTCTTGAAATAT TERM 686 503680 - 503698 + F 81 -9 -3.96469 | opp_overlap 503680 503674 503673, overlap 503677 TTACCAAATGAATAA CTCAATAA TTA TTATTGAG TTATTCTTGAAATAT spoIIID 503736 - 503990 + | sporulation transcriptional regulator spoiiid CLL_A0505 504070 - 505104 + | Rod shape-determining protein MreB TERM 687 505153 - 505108 - T 100 -19.5 -5.10461 | opp_overlap 505111, overlap 505111 505116 CTTATTGAATAAAAA GAATAAAATCATCCCAAAACT TTTA AGTTTTGGGATGATTTTATTT TTTATTATATGCGTC TERM 688 505111 - 505150 + T 100 -21.2 -5.60689 | opp_overlap 505108 505111 505116 ATTGAATAAAAAGAA TAAAATCATCCCAAAACT TTTA AGTTTTGGGATGATTTTA TTTTTTATTATATGC TERM 689 505150 - 505111 - T 100 -21.2 -4.64495 | opp_overlap 505111, overlap 505108 505116 ATTGAATAAAAAGAA TAAAATCATCCCAAAACT TTTA AGTTTTGGGATGATTTTA TTTTTTATTATATGC TERM 690 505145 - 505116 - T 100 -16.7 -5.18715 | opp_overlap 505111, overlap 505111 505108 ATAAAAAGAATAAAA TCATCCCAAAACT TTTA AGTTTTGGGATGA TTTTATTTTTTATTA CLL_A0506 505666 - 505148 - | putative sporulation protein YyaC CLL_A0507 505779 - 506186 + | hypothetical protein TERM 691 506348 - 506338 - f 72 -4 -5.29716 | TCAACAGAACAAAAA CAAA TAT TTTG GAGGAATTCCCGAGT TERM 692 506995 - 506973 - f 95 -12.2 -3.72576 | opp_overlap 506973, overlap 506978 TCTTCCTCCACCAAA GAGAATAAAC TAT GTTTATTCTC TTTTTTTATGAAAAT TERM 693 506973 - 506995 + F 100 -12.2 -5.61596 | opp_overlap 506973 506978 TCTTCCTCCACCAAA GAGAATAAAC TAT GTTTATTCTC TTTTTTTATGAAAAT TERM 694 507231 - 507247 + F 100 -6.6 -6.01369 | opp_overlap 507204 ATTATTGAATTAGTA CTCTTC TTATC GAAGAG TTTTTTTATTCTTTA TERM 695 507921 - 507895 - g 71 -8.2 -3.25836 | overlap 507898 ATAATAAACCTAAGA GAATAGATACAA TAG TTATATCTACTC AACATGGCGAAGAAG metK 507333 - 508508 + | methionine adenosyltransferase TERM 696 508541 - 508578 + F 93 -5.2 -6.20267 | gap 1 TATAATTTATAAAAA CTTATCTTACTTATTAA GTATA TTAATA-GTAAGGTGAG TTTTTTTATTTTTAC TERM 697 508743 - 508759 + F 73 -5.3 -4.73388 | opp_overlap 508743 508746 508755 508757, overlap 508729 GTATTATTCATAGTA TAATATT ATA AATATTA TTTTTAATAAGAATT CLL_A0516 508917 - 511136 + | helicase, RecD/TraA family CLL_A0517 511171 - 512184 + | hypothetical protein TERM 698 512387 - 512364 - g 93 -9.8 -4.46587 | opp_overlap 512362 GGAGTAATAAAAGAA CTTATACTTA AATT TAAGTATAAG AATAATTTTACAGCA CLL_A0518 512160 - 512813 + | competence protein F TERM 699 513489 - 513477 - g 78 -2.7 -5.86976 | TTAGAAAACAAAAAA CTAAA TTG TCTAG AAAAAAGAGTGGCTC CLL_A0519 513209 - 513742 + | ribosome-associated protein Y TERM 700 513760 - 513782 + F 100 -9.9 -5.46706 | opp_overlap 513760 ATAAAAATTCAAAAA TCCTCTAGC TATTT GCTGGAGGA TTTTTATTTTAGGGT TERM 701 513782 - 513760 - f 90 -7.7 -4.93595 | opp_overlap 513760 ATAAAAATTCAAAAA TCCTCTAGC TATTT GCTGGAGGA TTTTTATTTTAGGGT secA 514075 - 516585 + | preprotein translocase, SecA subunit TERM 702 516625 - 516673 + F 100 -9.3 -5.08824 | gap 1, opp_overlap 516625 516626, overlap 516626 ATAGAGTATAATAGA TTCCGTAG-AAGTTTCATAGTA AAATAA TATTATGAAATTTGCTACGGAG TTTTTTAAATAACAA TERM 703 516626 - 516672 + F 91 -10.6 -3.64812 | gap 1, opp_overlap 516626 516625, overlap 516625 TAGAGTATAATAGAT TCCGTAG-AAGTTTCATAGTA AAATAA TATTATGAAATTTGCTACGGA GTTTTTTAAATAACA CLL_A0521 516741 - 516875 + | hypothetical protein prfB 516862 - 517896 + | peptide chain release factor 2 TERM 704 517936 - 517903 - T 100 -8.4 -6.34616 | opp_overlap 517903 TTAAAATAAAAAAAA GTTGAGAGTTAA TGAAAAATTT TTAACTCTCAAC TTTTTTGATTTATTC TERM 705 517903 - 517936 + T 100 -10.5 -5.46129 | opp_overlap 517903 TTAAAATAAAAAAAA GTTGAGAGTTAATGA AAAA TTTTTAACTCTCAAC TTTTTTGATTTATTC CLL_A0523 519395 - 518013 - | aminopeptidase TERM 706 519085 - 519110 + g 81 -9.9 -3.01779 | overlap 519084 TCATACAAGACTTTA TCCTCATTTAA TATT TTAAATGAGGG ATTATTTCCGTTCTT TERM 707 519511 - 519497 - H 79 -2.2 -6.09196 | overlap 519504 TGTAAAATAAAAAAA TATTCA ATG TAAATA GTTACATAAAAAGAA CLL_A0524 519595 - 519936 + | hypothetical protein TERM 708 519987 - 519953 - T 100 -13.2 -5.86465 | opp_overlap 519953 519955, overlap 519955 AATAATATAAAAAAA TATAAGCTATTCATAT TTT ATATGAATAGCTTATG TTTTTTTAGTTACAC TERM 709 519953 - 519987 + T 100 -15.4 -5.63103 | opp_overlap 519953 519955, overlap 519955 AATAATATAAAAAAA TATAAGCTATTCATAT TTT ATATGAATAGCTTATG TTTTTTTAGTTACAC TERM 710 519955 - 519985 + T 100 -15.8 -4.45473 | opp_overlap 519953 519955, overlap 519953 TAATATAAAAAAATA TAAGCTATTCATAT TTT ATATGAATAGCTTA TGTTTTTTTAGTTAC TERM 711 519985 - 519955 - T 100 -15.8 -4.53737 | opp_overlap 519955 519953, overlap 519953 TAATATAAAAAAATA TAAGCTATTCATAT TTT ATATGAATAGCTTA TGTTTTTTTAGTTAC CLL_A0525 520329 - 519997 - | hypothetical protein TERM 712 520407 - 520431 + H 90 -10.3 -3.35778 | opp_overlap 520403 520404 520412, overlap 520429 CAATAAAAATATGGA TTATATTACAT TAA ATGTAATATAA TTAGTCTGATTATTT TERM 713 520445 - 520485 + H 100 -10.9 -4.52266 | opp_overlap 520455, overlap 520435 AATTAGTCTGATTAT TTAGACATTATGTTAATTT GTG AAATTAATATAGTGTTTAA TTTTGATATTTGGTT TERM 714 521017 - 520997 - g 77 -4.7 -5.29885 | overlap 521002 521009 AACCTAAAAAGAAAA CTAAAGCCA CAA TAGCTGTAG CCAAAGGTTTAAAAC CLL_A0526 520666 - 522837 + | protein tex TERM 715 522860 - 522896 + F 100 -12 -4.4296 | AAAATGTGTTTGAAG TTCTTAAGAATAAAAG AAGTA TTTTTATTCTTAAGAA TTTTCATCTATATTA TERM 716 522929 - 522897 - f 95 -10.9 -3.63515 | TTTTATTCTTAAGAA TTTTCATCTATATTA TAA TAATATAGATGAATA CAATACATTAGCTTA CLL_A0527 523026 - 523985 + | protein containing oxidoreductase domain TERM 717 524545 - 524559 + G 72 -5.8 -4.62471 | GAGAAGGGTCTTTAA TTATAG CAG CTATAA TTTTTGCAGCTTCAG CLL_A0528 524022 - 524987 + | exported membrane protein TERM 718 525026 - 525062 + F 73 -5.3 -4.73682 | overlap 525028 TAGAATATTAATATT TAGCCATTAAAGTGT AATGAAA GTACTTTGATGGCTG TTTTATGTTATAAAA TERM 719 525348 - 525367 + F 100 -7.2 -6.28401 | GATTTAATATATGCC CTGATGTA TTTA TGCATCAG TTTTTTTGTTTTTTA CLL_A0529 525575 - 526165 + | riboflavin transporter TERM 720 526179 - 526209 + T 100 -12.8 -5.60864 | opp_overlap 526179 AATAAAATATAAAAA TAATTCGTAAGCTA ATT TAGCCTACGAATTA TTTTTTTCATCTATA TERM 721 526209 - 526179 - T 100 -15 -5.34632 | opp_overlap 526179 AATAAAATATAAAAA TAATTCGTAAGCTA ATT TAGCCTACGAATTA TTTTTTTCATCTATA rimI 526655 - 526200 - | ribosomal-protein-alanine acetyltransferase TERM 722 526249 - 526266 + g 76 -4.3 -5.37345 | ATTATTGCATCTTCT TTATTAT CTTG ATAATAA TTTTTTCTAATTCCA CLL_A0531 527355 - 526639 - | glycoprotease family protein TERM 723 526686 - 526698 + g 76 -4.1 -5.47218 | overlap 526687 TTTTTTCATATTCCC TCTCA GCT TGAGG TTTTTTTAAATAAAA CLL_A0532 527813 - 527352 - | hypothetical protein CLL_A0533 528143 - 529009 + | putative ABC transporter substrate-binding lipoprotein TERM 724 529136 - 529168 + F 90 -6.3 -5.95539 | overlap 529141 529165 TAGTGCCCCTGCCAG AAAAGGTCGTAGCAC GTT GTGTTGCGGCTTTTA TTTTTTTATTTAAAA TERM 725 529141 - 529163 + F 100 -8.4 -5.64328 | overlap 529136 CCCCTGCCAGAAAAG GTCGTAGCAC GTT GTGTTGCGGC TTTTATTTTTTTATT CLL_A0535 529283 - 529408 + | hypothetical protein TERM 726 529410 - 529446 + F 100 -9.8 -5.55769 | opp_overlap 529410 TAAAAGCTATATAAA TTCTTAGTAATATC AAGGATAAA GATATTACTAAGAA TTTTTTATTATAAGA TERM 727 529446 - 529410 - f 93 -9.8 -4.12901 | opp_overlap 529410 TAAAAGCTATATAAA TTCTTAGTAATATC AAGGATAAA GATATTACTAAGAA TTTTTTATTATAAGA CLL_A0536 529804 - 530841 + | transcriptional regulator, AraC family TERM 728 530852 - 530885 + F 100 -8.4 -5.75478 | opp_overlap 530852 GATAAGTATTAAAAA GTTGTTTAAGGATG TCATAT CATTTTTAAACAAC TTTTTTTATCTACTT TERM 729 530955 - 530993 + F 72 -6.2 -4.38171 | opp_overlap 530958, overlap 530958 AACAAAACGATTTCA CAACAAAAAATTACGGTT TGA AATTGCAATTTTTTGTCG TTTTAATCTAATGTA CLL_A0537 531084 - 532223 + | glycerol dehydrogenase TERM 730 532292 - 532264 - g 93 -11.8 -2.57988 | overlap 532260 AAATGTAGTAATGGA GATGTGCAATGG TATAG CCATGGCACATC CAGAATTAGAGTTCG TERM 731 533300 - 533316 + G 71 -8.1 -3.17051 | opp_overlap 533299 533298, overlap 533299 TTTGATGTAGAAACT TGTGAAA GTT TTTCACA TATTAATAATGAAAA CLL_A0538 532223 - 533983 + | dihydroxyacetone kinase TERM 732 534061 - 534040 - T 79 -8.7 -3.79071 | opp_overlap 534040 CCTATAATATTGAAA CCCTTGACA AATT TGTCGAGGG TTTTCTACTTATGAA TERM 733 534040 - 534061 + T 100 -10.9 -4.58466 | opp_overlap 534040 CCTATAATATTGAAA CCCTTGACA AATT TGTCGAGGG TTTTCTACTTATGAA CLL_A0539 534588 - 534145 - | penicillin acylase TERM 734 534334 - 534361 + g 71 -8.6 -2.81768 | overlap 534333 AGCATTTCTATTTGT TATTACTATTCC CTTA GGAATAGTAACA CTTTCCATGATGTGA TERM 735 536306 - 536320 + G 78 -10 -2.71011 | overlap 536308 TTGTATCAGGGAGTT CAGCTG CTA CAGCTG TAATTGCCGGAGGAT CLL_A0540 534802 - 536619 + | CspA TERM 736 537607 - 537624 + G 80 -9.9 -2.79831 | opp_overlap 537606 537607 TTTATGGGCAGAAAT TTGGGTG GCTC CACCCAA TATAATGACAGTTGA TERM 737 537624 - 537607 - g 80 -9.9 -2.92475 | opp_overlap 537607, overlap 537606 TTTATGGGCAGAAAT TTGGGTG GCTC CACCCAA TATAATGACAGTTGA CLL_A0541 536606 - 538327 + | CspA TERM 738 538423 - 538455 + T 100 -7.8 -5.79595 | opp_overlap 538423 TAAGAATAATAAAAA CTCCATGTAAAAGT CTTAA ACTTATACACGGAG TTTTTTATTTTACGG TERM 739 538455 - 538423 - T 100 -10.7 -5.3798 | opp_overlap 538423 TAAGAATAATAAAAA CTCCATGTAAAAGTC TTA AACTTATACACGGAG TTTTTTATTTTACGG TERM 740 538499 - 538483 - T 77 -6.7 -4.61566 | overlap 538491 CGGGAAATTATAAAA TTTTCAA AGC TTGAAAA GCTGATAAAATCTAG TERM 741 539162 - 539143 - T 100 -9.4 -5.24129 | opp_overlap 539143 539159, overlap 539150 539157 CCCTGCCATAAAAAA GCTAGAAT TAAT ATTCTAGC TTTTTTTATATTTAA TERM 742 539143 - 539162 + T 100 -9.4 -5.88197 | opp_overlap 539143 539150 539157, overlap 539159 CCCTGCCATAAAAAA GCTAGAAT TAAT ATTCTAGC TTTTTTTATATTTAA TERM 743 539159 - 539197 + T 77 -8.7 -3.38072 | gap 1, opp_overlap 539143 539157 539150 539195, overlap 539143 539162 539195 CTAGAATTAATATTC TAGCTTTTTTTATATTTA AAAT TAAATATAAAAAAAG-TA TTGATATTAAGTAAA TERM 744 539162 - 539195 + T 95 -12.9 -3.25787 | opp_overlap 539157 539150, overlap 539159 GAATTAATATTCTAG CTTTTTTTATATTTA AAAT TAAATATAAAAAAAG TATTGATATTAAGTA TERM 745 539229 - 539195 - T 90 -5.3 -5.88197 | gap 1, opp_overlap 539159 539195, overlap 539157 539150 539227 TTAAATATAAAAAAA GTATTGATATTAAGTA AATT TACA-AATATCAATAC CTTTTAAAAAGTAAA CLL_A0543 540524 - 539457 - | oxidoreductase, 2-nitropropane dioxygenase family TERM 746 540557 - 540583 + H 79 -9 -3.81602 | opp_overlap 540548 540561 540564, overlap 540548 540561 AACAAATTTGATTAT TAAATATTTTGA TTA TCAAAGTATTTA TTATATTATAATTTA CLL_A0544 540802 - 540987 + | hypothetical protein TERM 747 541047 - 541078 + F 75 -3.9 -5.51612 | gap 1, overlap 541051 TTGTGAAACTAGGAA GGTACATTAC-TTA AAAGG TAGTGTAGTGTACC TTTTCTTTTTTGTAT CLL_A0545 541357 - 542058 + | RNA polymerase ECF-type sigma factor CLL_A0546 542081 - 543451 + | hypothetical protein TERM 748 543598 - 543563 - f 100 -12.2 -5.92337 | opp_overlap 543563 ATACAGTAAAAAAAA GTTCTTTCGTAATA GAGAAGAT TATTACGAAAGAAC TTTTTTATGTAAAAT TERM 749 543563 - 543598 + F 100 -12.9 -5.37043 | opp_overlap 543563 ATACAGTAAAAAAAA GTTCTTTCGTAATAG AGAAGA TTATTACGAAAGAAC TTTTTTATGTAAAAT TERM 750 544143 - 544133 - g 73 -5.4 -4.76312 | opp_overlap 544112 TAGAAGATTTAAAAA CCAT TGT ATGG GGAGCTGCTTTTACT CLL_A0547 543757 - 544887 + | Ser/Thr protein phosphatase family protein TERM 751 546021 - 546005 - g 73 -8.1 -3.38071 | overlap 546004 GAAACTTTTAAAAAT GATCTAA AGA TTAGATC TAACAAAGTGAGTAA CLL_A0548 545300 - 547615 + | hypothetical protein CLL_A0549 547701 - 548603 + | ABC transporter, substrate-binding protein TERM 752 549832 - 549817 - g 71 -2.6 -5.4387 | gap 1, overlap 549820 AGAGAAATGAAAAAA CTAGCTA ATT TAGC-AG AATGGATAGGGGATA TERM 753 549872 - 549885 + G 74 -2.5 -5.69473 | overlap 549864 549865 ATGCATATTATTTAG TAATA AATA TATTA TTTTTTTCTGATGTA TERM 754 550303 - 550319 + G 71 -8.1 -3.22113 | opp_overlap 550306 550311 550313, overlap 550302 550313 ACACGAGATAGTTTA GAAGAAA GTA TTTCTTC ATTTTATGCAGAAAT CLL_A0550 548878 - 550671 + | MutS domain protein CLL_A0551 550794 - 551699 + | exonuclease family protein TERM 755 551790 - 551805 + F 70 -2.6 -5.5112 | TACAAGAGAGGATTT TGTTAT GAAT ATAGCA TTTTTTCTTACTCCA CLL_A0552 551794 - 552231 + | CBS domain protein TERM 756 552236 - 552270 + T 100 -13.9 -5.34365 | opp_overlap 552240 AAATAGTATAAATGA TAAAGCTGTATTGAA ATTAA TTCAATACAGCTTTG TTTTTGTTGTTCTAA TERM 757 552266 - 552240 - T 100 -12.5 -4.18303 | opp_overlap 552236 AGTATAAATGATAAA GCTGTATTGAA ATTAA TTCAATACAGC TTTGTTTTTGTTGTT CLL_A0553 552942 - 552286 - | hypothetical protein CLL_A0554 553606 - 552953 - | phage shock protein A TERM 758 553068 - 553085 + g 70 -4.9 -4.68132 | AAACCTTGTGCACGA GATTCAG TTCT TTGAATC TTTCTTTCTATATTA CLL_A0555 554336 - 553644 - | hypothetical protein TERM 759 554588 - 554556 - H 87 -6.5 -5.4182 | opp_overlap 554558, overlap 554550 554557 554558 AATGATAAATAAAAA CTTTTTAAGAGTTAT AAT ATAACTCTTAAAATT TAATATGAAAATCAA TERM 760 554587 - 554557 - H 90 -10 -3.82652 | opp_overlap 554558, overlap 554550 554556 554558 ATGATAAATAAAAAC TTTTTAAGAGTTAT AAT ATAACTCTTAAAAT TTAATATGAAAATCA TERM 761 554558 - 554586 + H 100 -13.5 -3.83502 | opp_overlap 554550 554557 554556 554558 TGATAAATAAAAACT TTTTAAGAGTTAT AAT ATAACTCTTAAAA TTTAATATGAAAATC TERM 762 554586 - 554558 - H 93 -13.5 -2.87964 | opp_overlap 554558, overlap 554550 554557 554556 TGATAAATAAAAACT TTTTAAGAGTTAT AAT ATAACTCTTAAAA TTTAATATGAAAATC TERM 763 554693 - 554646 - H 75 -9.6 -2.52353 | opp_overlap 554652, overlap 554645 554644 AGAATGAGTAAAACT TGATTTTCATTTTATGATTTTC ACTT AACAATTATAAAATGAAAATCA TAATGCCACTTAAAC CLL_A0556 554899 - 556035 + | putative 30S ribosomal protein S1 homolog TERM 764 556362 - 556306 - T 100 -15.1 -3.12353 | gap 1, opp_overlap 556306 556307 556312 556355, overlap 556312 ATATTAATACATAGA TTAAAATAAGCTGTTTCAA-ATACAA GGGATA TTGTATGTTGAAACAGCTTATTTTAG TTTTAAAGTATTTTA TERM 765 556306 - 556362 + T 100 -17.3 -4.23434 | gap 1, opp_overlap 556306 556312, overlap 556307 556312 556355 ATATTAATACATAGA TTAAAATAAGCTGTTTCAA-ATACAA GGGATA TTGTATGTTGAAACAGCTTATTTTAG TTTTAAAGTATTTTA TERM 766 556307 - 556361 + T 100 -18.6 -3.12976 | gap 1, opp_overlap 556306 556312, overlap 556306 556312 556355 TATTAATACATAGAT TAAAATAAGCTGTTTCAA-ATACAA GGGATA TTGTATGTTGAAACAGCTTATTTTA GTTTTAAAGTATTTT TERM 767 556312 - 556356 + T 100 -14.1 -4.67641 | gap 1, opp_overlap 556312 556306, overlap 556307 556306 556355 ATACATAGATTAAAA TAAGCTGTTTCAA-ATACAA GGGATA TTGTATGTTGAAACAGCTTA TTTTAGTTTTAAAGT TERM 768 556356 - 556312 - T 100 -14.1 -4.41956 | gap 1, opp_overlap 556307 556306 556312 556355, overlap 556306 ATACATAGATTAAAA TAAGCTGTTTCAA-ATACAA GGGATA TTGTATGTTGAAACAGCTTA TTTTAGTTTTAAAGT pyk 557812 - 556394 - | pyruvate kinase TERM 769 557895 - 557935 + H 100 -9.5 -5.04377 | opp_overlap 557898 557904 557923, overlap 557898 557923 ATTAACTAAATTCTA TAATATTAATTTAGTTTTA TGA TAAAATTAAATTAATATAA TTTATTTTATTTTAA TERM 770 557932 - 557898 - H 77 -9 -3.40784 | opp_overlap 557898 557895 557923, overlap 557904 557923 AACTAAATTCTATAA TATTAATTTAGTTTTA TGA TAAAATTAAATTAATA TAATTTATTTTATTT TERM 771 557898 - 557932 + H 93 -11.2 -3.32644 | opp_overlap 557898 557904 557923, overlap 557895 557923 AACTAAATTCTATAA TATTAATTTAGTTTTA TGA TAAAATTAAATTAATA TAATTTATTTTATTT TERM 772 557923 - 557939 + H 78 -5.3 -5.14626 | opp_overlap 557904 557898 557923, overlap 557898 557895 GTTTTATGATAAAAT TAAATTA ATA TAATTTA TTTTATTTTAATAAT TERM 773 559262 - 559243 - g 74 -6.6 -4.34444 | overlap 559253 CTAAGATAAGAGAAA TTTGTAAA GATG TTTACAAA CAAATGTATAATGAA CLL_A0558 558012 - 559466 + | aminoacyl-histidine dipeptidase TERM 774 559502 - 559543 + F 75 -3.9 -5.51353 | opp_overlap 559520, overlap 559505 TTAGCATTATATATT AAAGGTGTGTAATAAGAGT GTAA AATTTTATTACATGCCTTA TTTTTATTATTTTTG TERM 775 559505 - 559540 + F 73 -5.6 -4.74161 | opp_overlap 559520, overlap 559502 GCATTATATATTAAA GGTGTGTAATAAGAGT GTAA AATTTTATTACATGCC TTATTTTTATTATTT CLL_A0559 559714 - 560226 + | acetyltransferase, gnat family CLL_A0560 560350 - 561006 + | hypothetical protein maf 561244 - 561810 + | septum formation protein Maf TERM 776 562256 - 562235 - g 71 -7.5 -3.56972 | opp_overlap 562239, overlap 562239 562248 562251 AGTTTATTAAAGCAA GAAATATTA AAAG TAATATTTC TAAATACTAAAAATA CLL_A0562 561854 - 562543 + | DNA repair protein RadC TERM 777 562842 - 562820 - g 78 -7.2 -4.46835 | ACAATGTTAAAGAAA TTAATAGAAA AAG TTTCTACTAA AAATGCATTTAAGAG CLL_A0563 562562 - 563662 + | Rod shape-determining protein MreB TERM 778 564340 - 564322 - g 73 -9 -2.58618 | overlap 564321 AGAAATAAAAGAAGG TGATGTAA TAA TTACATCA GGTGTTGGAATGATT mreC 563666 - 564511 + | rod shape-determining protein MreC mreD 564522 - 565013 + | rod shape-determining protein MreD CLL_A0566 565010 - 567925 + | penicillin-binding Protein dimerisation domain family TERM 779 567947 - 567978 + F 100 -9 -5.63517 | opp_overlap 567947 GAAAAATAATAAAAA GTTATCTTAAAC AAATTTAA GTTTAAGATAAC TTTTTTATTTACGAA TERM 780 567978 - 567947 - f 100 -9 -5.51353 | opp_overlap 567947 GAAAAATAATAAAAA GTTATCTTAAAC AAATTTAA GTTTAAGATAAC TTTTTTATTTACGAA minC 568298 - 568939 + | septum site-determining protein MinC minD 568958 - 569755 + | septum site-determining protein MinD minE 569768 - 570034 + | cell division topological specificity factor MinE CLL_A0570 570156 - 571289 + | stage V sporulation protein E TERM 781 571305 - 571279 - f 78 -5.4 -5.14682 | opp_overlap 571279, overlap 571274 571304 TGAGAAGAAAGAAAA TACATTTTTA GATAAAA TAAAAATGTA TTTTAAATGGTTTAG mgsA 571338 - 571697 + | methylglyoxal synthase TERM 782 571737 - 571762 + G 100 -9.1 -5.44721 | opp_overlap 571737 GAAGATTATATAGAA GCAGGTGATAT TAAT GTATCATCTGC TTTTTTTAGGATACT CLL_A0572 571716 - 571847 + | hypothetical protein TERM 783 572229 - 572188 - f 93 -12 -3.22774 | opp_overlap 572189 572193 572196, overlap 572189 572193 572196 TATACCTAGTATTAA TGAAATAACTAGAATTAA TAATCT TTAATTCTAGTTATTTCT CTAATATAAAATTTA TERM 784 572189 - 572228 + F 100 -15.5 -2.86743 | opp_overlap 572188 572189 572193 572196, overlap 572193 572196 ATACCTAGTATTAAT GAAATAACTAGAATTAA TAATCT TTAATTCTAGTTATTTC TCTAATATAAAATTT TERM 785 572228 - 572189 - f 100 -15.5 -2.53343 | opp_overlap 572189 572193 572196, overlap 572188 572193 572196 ATACCTAGTATTAAT GAAATAACTAGAATTAA TAATCT TTAATTCTAGTTATTTC TCTAATATAAAATTT TERM 786 572224 - 572193 - f 95 -10.5 -3.97042 | opp_overlap 572189 572193 572196, overlap 572189 572188 572196 CTAGTATTAATGAAA TAACTAGAATTAA TAATCT TTAATTCTAGTTA TTTCTCTAATATAAA TERM 787 572193 - 572224 + F 95 -10.5 -4.11404 | opp_overlap 572193 572189 572188 572196, overlap 572189 572196 CTAGTATTAATGAAA TAACTAGAATTAA TAATCT TTAATTCTAGTTA TTTCTCTAATATAAA TERM 788 572221 - 572196 - f 77 -7.8 -4.10437 | opp_overlap 572193 572189 572196, overlap 572193 572189 572188 GTATTAATGAAATAA CTAGAATTAA TAATCT TTAATTCTAG TTATTTCTCTAATAT TERM 789 572196 - 572221 + F 77 -7.8 -4.17416 | opp_overlap 572196 572193 572189 572188, overlap 572193 572189 GTATTAATGAAATAA CTAGAATTAA TAATCT TTAATTCTAG TTATTTCTCTAATAT TERM 790 572453 - 572469 + G 75 -5.3 -4.88405 | opp_overlap 572455 GTGTAGCTTCTGTAA TATTATT TGT AATAATA TTTTCTTTAAAAATT CLL_A0573 572266 - 573063 + | putative cell wall endopeptidase, family M23/M37 CLL_A0574 573092 - 573967 + | sterol-regulatory element binding protein TERM 791 574075 - 574049 - f 100 -9.7 -5.14965 | opp_overlap 574049 AGGGTTATCAAAAAA TAAGAAGTATA CTTGT TATACTTCTTA TTTTAATGTAGAAGA TERM 792 574049 - 574075 + F 89 -9.7 -4.34402 | opp_overlap 574049 AGGGTTATCAAAAAA TAAGAAGTATA CTTGT TATACTTCTTA TTTTAATGTAGAAGA CLL_A0575 574179 - 576032 + | radical SAM domain protein CLL_A0576 576016 - 576729 + | hypothetical protein CLL_A0577 576808 - 578256 + | ribonuclease, Rne/Rng family rplU 578451 - 578762 + | ribosomal protein L21 CLL_A0579 578767 - 579153 + | hypothetical protein rpmA 579158 - 579457 + | ribosomal protein L27 TERM 793 579475 - 579490 + F 100 -10.4 -4.79756 | opp_overlap 579475 ATTTTTTGAAATAAA GCACCC AACA GGGTGC TTTTTAAGTTATATC TERM 794 579490 - 579475 - f 100 -10.4 -4.41616 | opp_overlap 579475 ATTTTTTGAAATAAA GCACCC AACA GGGTGC TTTTTAAGTTATATC TERM 795 580237 - 580224 - g 76 -6.7 -4.46926 | GATCTTATTATAAAA GTTCC AATG GGAAC AATAATAAGAGAAGA CLL_A0581 579960 - 581246 + | Spo0B-associated GTP-binding protein CLL_A0582 581268 - 581564 + | hypothetical protein TERM 796 581602 - 581577 - f 100 -9.2 -5.42131 | opp_overlap 581577, overlap 581582 TAATTAGATAAAAAA TAAAACCCTT TATTAT AAGGGTTTTA TTTTTTTACTTTTAG TERM 797 581577 - 581602 + F 100 -9.2 -5.79588 | opp_overlap 581577 581582 TAATTAGATAAAAAA TAAAACCCTT TATTAT AAGGGTTTTA TTTTTTTACTTTTAG TERM 798 581597 - 581582 - f 79 -4.7 -5.51612 | opp_overlap 581577, overlap 581577 AGATAAAAAATAAAA CCCTT TATTAT AAGGG TTTTATTTTTTTACT nadD 581874 - 582476 + | nicotinate (nicotinamide) nucleotide adenylyltransferase TERM 799 582623 - 582610 - g 71 -3.8 -5.09762 | opp_overlap 582610 ATTTCAATAGAAAAA GCTG AGATAG CAGC GTTTGCTCATGATGT CLL_A0584 582481 - 583056 + | hypothetical protein CLL_A0585 583126 - 584421 + | membrane-bound protein LytR CLL_A0586 584446 - 585342 + | pseudouridine synthase, RluA family TERM 800 585339 - 585375 + TF 100 -10.3 -5.54192 | opp_overlap 585340 585342, overlap 585342 ATTAGAAAAAATAAA ATAGAAGAAGATAGGAT TTA ATCCTGTCTTCTTCTTC TTTTTTTCAATTGAT TERM 801 585374 - 585340 - Tf 100 -11.6 -5.49579 | opp_overlap 585339 585342, overlap 585342 TTAGAAAAAATAAAA TAGAAGAAGATAGGAT TTA ATCCTGTCTTCTTCTT CTTTTTTTCAATTGA TERM 802 585372 - 585342 - Tf 100 -14.2 -4.34916 | opp_overlap 585339 585342, overlap 585340 AGAAAAAATAAAATA GAAGAAGATAGGAT TTA ATCCTGTCTTCTTC TTCTTTTTTTCAATT TERM 803 585342 - 585372 + TF 100 -16.4 -4.83715 | opp_overlap 585342 585340, overlap 585339 AGAAAAAATAAAATA GAAGAAGATAGGAT TTA ATCCTGTCTTCTTC TTCTTTTTTTCAATT CLL_A0587 586687 - 585356 - | D-alanyl-D-alanine carboxypeptidase TERM 804 585694 - 585719 + gF 71 -7.1 -3.74137 | opp_overlap 585699, overlap 585698 TTAGATTTTTATTTT CAAATTTAATA TAAG TATTAAGTTTG TCTTTATCTTCATTT CLL_A0588 586617 - 586757 + | hypothetical protein CLL_A0589 586892 - 587512 + | DNA-binding protein, ComEA family TERM 805 588338 - 588324 - g 73 -4.4 -5.12971 | opp_overlap 588325 AAGATTTAATAAAAA TTATAT AGT ATATAA ATTAAGTACTAAAAC CLL_A0590 587695 - 588399 + | putative lipoprotein CLL_A0591 588425 - 588802 + | hypothetical protein rumA 588819 - 590171 + | 23S rRNA (uracil-5-)-methyltransferase RumA TERM 806 590225 - 590254 + T 83 -3.6 -5.87996 | CTAACTTCCACCATT CTTCCACCCT AAGTATTAAG ATGGTGGAAG TTTTTTTATTGCTTC CLL_A0593 591397 - 590240 - | phage integrase family protein CLL_A0594 591554 - 591381 - | hypothetical protein TERM 807 591724 - 591707 - R 100 -7.1 -6.48081 | opp_overlap 591707 TTTACAAAAAAAAAA TCATAGA TAAA TCTATGA TTATAATATACAGAT CLL_A0595 592113 - 591739 - | putative DNA-binding protein CLL_A0596 592313 - 592501 + | hypothetical protein CLL_A0597 592553 - 592762 + | transcriptional regulator, AraC family CLL_A0598 592779 - 593000 + | DNA binding domain, excisionase family protein TERM 808 593030 - 593004 - f 100 -11.1 -4.04752 | opp_overlap 593004 AAAGTAGATTAGAAA TTACATGAAGA TTATT TCTTCATGTAA TTATTTATATAGATT TERM 809 593004 - 593030 + F 100 -11.1 -4.16301 | opp_overlap 593004 AAAGTAGATTAGAAA TTACATGAAGA TTATT TCTTCATGTAA TTATTTATATAGATT TERM 810 593611 - 593579 - g 90 -2.9 -6.15828 | opp_overlap 593563, overlap 593557 593580 593605 GTTACGAAAAAAAAA CGTAACGTTAT GCAAAATGAAA ATAACGTTACA GTAACGGAACAGAAT TERM 811 593617 - 593605 - g 72 -6.3 -4.43392 | overlap 593580 593579 GCAAAATGAAAATAA CGTTA CAG TAACG GAACAGAATAAGAGG TERM 812 593684 - 593668 - g 88 -9.5 -4.15654 | GAAGAAGAATAAGAA CTCTATC ATA GATAGAG AGAAAGAGAGTAATG CLL_A0599 593078 - 593710 + | putative phage replisome organizer CLL_A0600 593852 - 594070 + | DNA replication protein DnaD CLL_A0601 594253 - 594555 + | hypothetical protein TERM 813 594587 - 594631 + F 82 -9.1 -4.17048 | gap 1, opp_overlap 594586 AATCATTAAAATATC GTATTATTCAAAAAA-ATTG AATTTG CGATATTTTTTGAATAATAC TTCTTTTAAGCGAAA TERM 814 594744 - 594698 - f 93 -12.4 -3.20637 | opp_overlap 594698, overlap 594693 594703 AAATCTAATATTTAA GGCAAGTCCACTTCGGCAAACA AGA TGTTTACCTAAATGTACATGCC TTTTTATTCTTTTAA TERM 815 594698 - 594744 + F 100 -8 -5.4593 | opp_overlap 594693 594698 594703 AAATCTAATATTTAA GGCAAGTCCACTTCGGCAAACA AGA TGTTTACCTAAATGTACATGCC TTTTTATTCTTTTAA TERM 816 594739 - 594703 - f 72 -8.1 -3.20878 | opp_overlap 594698, overlap 594698 594693 TAATATTTAAGGCAA GTCCACTTCGGCAAACA AGA TGTTTACCTAAATGTAC ATGCCTTTTTATTCT TERM 817 595140 - 595191 + F 74 -6 -4.72696 | gap 1, opp_overlap 595153 595154, overlap 595154 AACTTTACCTTTATG GCATAAATTAA-AACTGGACAGGCG AAA CGCTAGTCCATTTATTAACCTATGC TTATTTTTATTTAGA TERM 818 595176 - 595154 - f 70 -7.6 -3.36401 | opp_overlap 595140 595154, overlap 595153 GGCATAAATTAAAAC TGGACAGGCG AAA CGCTAGTCCA TTTATTAACCTATGC TERM 819 595154 - 595176 + F 95 -9.8 -4.19678 | opp_overlap 595154 595153, overlap 595140 GGCATAAATTAAAAC TGGACAGGCG AAA CGCTAGTCCA TTTATTAACCTATGC CLL_A0602 596220 - 596861 + | hypothetical protein TERM 820 597193 - 597229 + T 100 -13.3 -4.84017 | opp_overlap 597196, overlap 597196 AAAATGACCATGTTA AAAGGCAATAAACATGA AAA TTATGTTTATTGCCTTA TTTTTATGCAACATT TERM 821 597196 - 597226 + T 100 -15 -4.52873 | opp_overlap 597196, overlap 597193 ATGACCATGTTAAAA GGCAATAAACATGA AAA TTATGTTTATTGCC TTATTTTTATGCAAC TERM 822 597226 - 597196 - T 100 -12.8 -4.15833 | opp_overlap 597196 597193 ATGACCATGTTAAAA GGCAATAAACATGA AAA TTATGTTTATTGCC TTATTTTTATGCAAC CLL_A0603 597433 - 597233 - | hypothetical protein TERM 823 597436 - 597476 + r 75 -5.5 -4.94962 | opp_overlap 597439, overlap 597439 CATTAATTTCCATTA AAATCACCTCCTACATAGA ATA TATGTGTAGAGGGTGATTA TTTTATTTGGATTAT TERM 824 597439 - 597473 + r 77 -7.2 -4.5493 | opp_overlap 597439, overlap 597436 TAATTTCCATTAAAA TCACCTCCTACATAGA ATA TATGTGTAGAGGGTGA TTATTTTATTTGGAT CLL_A0604 598350 - 597874 - | hypothetical protein CLL_A0605 598615 - 598857 + | hypothetical protein TERM 825 598950 - 598994 + F 79 -3.8 -5.7946 | opp_overlap 598944 TTAAGAACATAAAAA GAATTTTAAATATGATACTG CAGGT CTGTATTATATTTTTAATTC TTTTTTTATTACAGA TERM 826 600280 - 600266 - g 74 -2.8 -5.65513 | opp_overlap 600266, overlap 600268 TATGAATGAAAAAAA TATTCC AAA GGAAGA ATTAGTATTTAAAAT TERM 827 600278 - 600268 - g 70 -5.4 -4.45473 | opp_overlap 600266, overlap 600266 TGAATGAAAAAAATA TTCC AAA GGAA GAATTAGTATTTAAA TERM 828 601203 - 601180 - g 71 -8.2 -3.16608 | ATTCAAAGGACTTAA CTTCTACACC ACAA GGTACAGAAG AAAGAAAAAAATGTT CLL_A0606 599847 - 601277 + | DNA mismatch repair enzyme MutH CLL_A0607 601302 - 602426 + | hypothetical protein CLL_A0608 602625 - 603899 + | DNA-cytosine methyltransferase family protein TERM 829 603912 - 603933 + F 89 -4.5 -6.08563 | opp_overlap 603912 TAAATATATTAAAGA GAAGACT AATGTAGA AGTCTTC TTTTTTTTATATATT CLL_A0609 604093 - 604839 + | hypothetical protein CLL_A0610 604855 - 606156 + | hypothetical protein TERM 830 606415 - 606401 - g 91 -10 -4.09455 | opp_overlap 606399 AGCAATATCAAATAA GTGGCT AAT AGCCAC AATAATATCTATAGT CLL_A0611 606267 - 607034 + | hypothetical protein TERM 831 607088 - 607136 + T 75 -7 -4.36592 | opp_overlap 607094, overlap 607099 TAATTTAATATAACT TTAAAATTAAACCTGGAATGTA AATTC TACATTTCAGGTTTAATTCACA TATTTTTTATTAAAA TERM 832 607130 - 607094 - T 100 -13.3 -4.2361 | opp_overlap 607088 607099 AATATAACTTTAAAA TTAAACCTGGAATGTAA ATT CTACATTTCAGGTTTAA TTCACATATTTTTTA TERM 833 607099 - 607125 + T 95 -10.3 -3.93026 | opp_overlap 607094, overlap 607088 AACTTTAAAATTAAA CCTGGAATGTA AATTC TACATTTCAGG TTTAATTCACATATT CLL_A0612 607714 - 607127 - | RNA polymerase sigma factor, sigma-70 family TERM 834 607413 - 607429 + g 71 -8.7 -2.85593 | opp_overlap 607413, overlap 607412 TCTGTTAATGTAAGA GCAGGAG ATC CTTCTGC ATTATCTCTATTTTT TERM 835 607436 - 607447 + g 77 -3 -5.63504 | TCCTTCTGCATTATC TCTA TTTT TAGA TTTTTTTATAAGATT TERM 836 607784 - 607740 - H 73 -7.5 -3.66883 | opp_overlap 607736 607740 607774, overlap 607773 607776 TGAATACATTTTAAA TACTATATATAGAATTTACTT AAT AAATAAAGACTACATATAGTA TATATGTATTTAAAC TERM 837 607817 - 607773 - H 78 -8.2 -3.94772 | opp_overlap 607740 607774, overlap 607740 607776 CTTAATAAATAAAGA CTACATATAGTATATATG TATTTAAAC CATATATACCATATGGAG GTGTATAAAAATGGA TERM 838 607774 - 607792 + H 72 -7.6 -3.57119 | opp_overlap 607740 607773 607776, overlap 607740 TTAATAAATAAAGAC TACATATA GTA TATATGTA TTTAAACCATATATA TERM 839 607814 - 607776 - H 71 -8.5 -3.01118 | opp_overlap 607740 607774, overlap 607740 607773 AATAAATAAAGACTA CATATAGTATATATG TATTTAAAC CATATATACCATATG GAGGTGTATAAAAAT CLL_A0613 607828 - 608529 + | N-acetylmuramoyl-L-alanine amidase TERM 840 608576 - 608536 - f 100 -10 -4.80289 | opp_overlap 608538 608543, overlap 608527 608538 ATAAAATAGATAAAA TATTAAAGTCATATGAGC ATTAA GTTCATATGACTTTAATT AATTTACGAGAGAAA TERM 841 608538 - 608574 + F 100 -14.8 -3.51232 | opp_overlap 608536 608527 608538, overlap 608543 AAAATAGATAAAATA TTAAAGTCATATGAGC ATTAA GTTCATATGACTTTAA TTAATTTACGAGAGA TERM 842 608574 - 608538 - f 100 -12.6 -3.9872 | opp_overlap 608538 608543, overlap 608536 608527 AAAATAGATAAAATA TTAAAGTCATATGAGC ATTAA GTTCATATGACTTTAA TTAATTTACGAGAGA TERM 843 608543 - 608569 + F 95 -10.3 -4.04394 | opp_overlap 608538 608536 608527, overlap 608538 AGATAAAATATTAAA GTCATATGAGC ATTAA GTTCATATGAC TTTAATTAATTTACG TERM 844 608676 - 608658 - f 73 -3.3 -5.58454 | opp_overlap 608658 TTTATACTAAAAAAA TTATTAT TTATT ATAATAA TTGACTTATTTATAA CLL_A0614 608853 - 609098 + | hypothetical protein CLL_A0615 609126 - 610199 + | metallo beta-lactamase family protein TERM 845 610245 - 610197 - T 91 -13.6 -2.5619 | gap 1, opp_overlap 610205, overlap 610200 610205 TCAAAATGTAGCAAG TAATAAAATCCCCATGTAAAAGC TTAA ACTTATACATGGGGATTTT-TTA TGGAAAGAAAAATTG TERM 846 610243 - 610200 - T 100 -13.4 -3.41982 | opp_overlap 610205, overlap 610197 610205 AAATGTAGCAAGTAA TAAAATCCCCATGTAAAAGC TTAA ACTTATACATGGGGATTTTT TATGGAAAGAAAAAT TERM 847 610205 - 610238 + T 100 -12.6 -5.24129 | opp_overlap 610200 610197 610205 TAGCAAGTAATAAAA TCCCCATGTAAAAG CTTAAA CTTATACATGGGGA TTTTTTATGGAAAGA TERM 848 610238 - 610205 - T 100 -13.3 -4.80178 | opp_overlap 610205, overlap 610200 610197 TAGCAAGTAATAAAA TCCCCATGTAAAAGC TTAA ACTTATACATGGGGA TTTTTTATGGAAAGA CLL_A0616 610495 - 610277 - | hypothetical protein CLL_A0617 610769 - 610539 - | hypothetical protein TERM 849 611350 - 611375 + H 100 -12 -4.94672 | TTAAAATAGGCTATT TGCCAACATC AATTAA GATGTTGGCA TTTTTGATATTATTT CLL_A0618 611570 - 613606 + | penicillin-binding protein 3 TERM 850 613702 - 613674 - f 95 -10.5 -4.0156 | opp_overlap 613674 TTATACTAATAATAA TCATACTACATAT AAA AAATGTAGTATGA TTTTTTTAGCTCTTA TERM 851 613674 - 613702 + F 100 -10.5 -5.52909 | opp_overlap 613674 TTATACTAATAATAA TCATACTACATAT AAA AAATGTAGTATGA TTTTTTTAGCTCTTA TERM 852 613749 - 613772 + F 79 -8.8 -3.71284 | opp_overlap 613749 ATTTGTAGAGAAAAA GCTGGTAGCC GATT GACTACCGGC TTCTATTGGTACCGG TERM 853 613772 - 613749 - f 100 -8.8 -4.9725 | opp_overlap 613749 ATTTGTAGAGAAAAA GCTGGTAGCC GATT GACTACCGGC TTCTATTGGTACCGG TERM 854 615440 - 615420 - g 73 -9.1 -2.65369 | opp_overlap 615420 615423 615425, overlap 615419 615418 615425 CGACAACAGAAAATT CAAAAGACA TTA TGTCTCTTG TTGATGATAATTTAT TERM 855 615435 - 615425 - g 70 -5.4 -4.46854 | opp_overlap 615423 615420 615425, overlap 615420 615419 615418 ACAGAAAATTCAAAA GACA TTA TGTC TCTTGTTGATGATAA CLL_A0619 613868 - 615514 + | ggdef domain protein TERM 856 615582 - 615625 + F 100 -9.9 -5.07486 | opp_overlap 615582 615584 615601 615611 AGTTATAATAAAATG TACCCTATAGGATAGAC AATATAAAAA GTCTATTTTATAGGGTA TTTTTATTACAAATA TERM 857 616135 - 616114 - g 75 -6 -4.7889 | opp_overlap 616133 AGAAAGATTTAAAAA GGAAAATA ATAGGG TATTTTCC AGAATGGGCTTATAA CLL_A0620 615963 - 618116 + | chitinase A TERM 858 618215 - 618257 + F 78 -5.8 -5.27206 | opp_overlap 618231 AAATATAACAAGAAA TAGCTAGTGGATTTAAGAAA TTA TATTTCAAATTCATTAGCTA TTTTTATTATATATA TERM 859 619265 - 619255 - g 71 -2.6 -5.39221 | opp_overlap 619255 AGAAGAATTAAAAAA TAAT AGT ATTA ATTGTGATTCAATAA CLL_A0621 618479 - 620221 + | hypothetical sigma-54-dependent transcriptional regulator YgeV TERM 860 620255 - 620219 - f 100 -15.7 -3.97401 | opp_overlap 620219 620224, overlap 620224 AGAAAATTAGAAGAA TAAAATATAATTTATCA TTA TGATAAATTATATTTTA TTATGTTAACTTAAG TERM 861 620219 - 620255 + F 100 -15.7 -3.71686 | opp_overlap 620219 620224, overlap 620224 AGAAAATTAGAAGAA TAAAATATAATTTATCA TTA TGATAAATTATATTTTA TTATGTTAACTTAAG TERM 862 620224 - 620250 + F 100 -11.2 -4.90381 | opp_overlap 620219 620224, overlap 620219 ATTAGAAGAATAAAA TATAATTTATCA TTA TGATAAATTATA TTTTATTATGTTAAC TERM 863 620250 - 620224 - f 100 -11.2 -4.9645 | opp_overlap 620224 620219, overlap 620219 ATTAGAAGAATAAAA TATAATTTATCA TTA TGATAAATTATA TTTTATTATGTTAAC TERM 864 620348 - 620309 - f 83 -9.6 -3.48395 | opp_overlap 620311, overlap 620314 AGGCGTGTTACAGAA TTTAACAGATACAATATA TAGG TATATTGTATCTGTTATT TTTTTGTATTTCTTA TERM 865 620311 - 620346 + F 100 -16.6 -5.90231 | opp_overlap 620309 620314 GCGTGTTACAGAATT TAACAGATACAATATA TAGG TATATTGTATCTGTTA TTTTTTTGTATTTCT TERM 866 620343 - 620314 - f 100 -13.9 -3.26449 | opp_overlap 620311, overlap 620309 TGTTACAGAATTTAA CAGATACAATATA TAGG TATATTGTATCTG TTATTTTTTTGTATT TERM 867 620361 - 620396 + F 77 -8.7 -3.39668 | opp_overlap 620379 ATTTTTTTGTATTTC TTATTATTTTGATAA AAACAA TTATCAAAATGATAA TTATAAGATTTAGAA TERM 868 620399 - 620379 - f 76 -6.3 -4.84359 | opp_overlap 620361 TTATTTTGATAAAAA CAATTATCA AAA TGATAATTA TAAGATTTAGAAATA TERM 869 620646 - 620634 - g 70 -6.3 -4.23528 | TAAGGTAAAAGCAAA TGCTT ATG AAGCA GATATGACAAAATTT TERM 870 621641 - 621607 - g 72 -6.7 -4.21275 | gap 1 GGAATGTATGGAAAA CCATTAGTTGATAAAT GGAC ATTC-TCAACTAACGG AGTATCAATAATGGG CLL_A0622 620602 - 621801 + | M20/DapE family protein YgeY ygeW 621858 - 623051 + | probable carbamoyltransferase YgeW TERM 871 623114 - 623073 - f 84 -8.9 -4.20084 | opp_overlap 623076, overlap 623074 623076 ATTATTTATTTAAAA TGATATAGACTCTTCTGGA AAAA TCCATAAGAGTCTATATTT CACTGTAAATGAAAG TERM 872 623113 - 623074 - f 90 -12.4 -3.11569 | opp_overlap 623076, overlap 623073 623076 TTATTTATTTAAAAT GATATAGACTCTTCTGGA AAAA TCCATAAGAGTCTATATT TCACTGTAAATGAAA TERM 873 623076 - 623111 + F 100 -15 -3.71873 | opp_overlap 623074 623073 623076 ATTTATTTAAAATGA TATAGACTCTTCTGGA AAAA TCCATAAGAGTCTATA TTTCACTGTAAATGA TERM 874 623111 - 623076 - f 100 -15 -3.11476 | opp_overlap 623076, overlap 623074 623073 ATTTATTTAAAATGA TATAGACTCTTCTGGA AAAA TCCATAAGAGTCTATA TTTCACTGTAAATGA arcC 623365 - 624297 + | carbamate kinase dpaL 624336 - 625544 + | diaminopropionate ammonia-lyase CLL_A0626 625571 - 626902 + | proteoglycan CLL_A0627 626916 - 627608 + | YczE CLL_A0628 627680 - 629041 + | hydroxydechloroatrazine ethylaminohydrolase CLL_A0629 629079 - 630167 + | dihydroorotate dehydrogenase family protein TERM 875 630157 - 630143 - f 73 -7.2 -4.09243 | TAGATGTCCCCAAAA TGCATT ATC AATGCA ATATAAGTAAGAAAA CLL_A0630 630362 - 630736 + | putative endoribonuclease L-PSP TERM 876 630778 - 630734 - f 100 -24.9 -2.63631 | opp_overlap 630729 630737 630741, overlap 630737 630741 GTAATTGCTACATTA TAATTAATATGATGAGGTAGA ATA TCTACCTCATCATATTAATTA TAAGAGAAATTTTTG TERM 877 630737 - 630775 + F 100 -22.2 -3.2964 | opp_overlap 630734 630737 630741, overlap 630729 630741 ATTGCTACATTATAA TTAATATGATGAGGTAGA ATA TCTACCTCATCATATTAA TTATAAGAGAAATTT TERM 878 630775 - 630737 - f 100 -22.2 -3.4678 | opp_overlap 630737 630729 630741, overlap 630734 630741 ATTGCTACATTATAA TTAATATGATGAGGTAGA ATA TCTACCTCATCATATTAA TTATAAGAGAAATTT TERM 879 630771 - 630741 - f 100 -18.6 -3.4878 | opp_overlap 630737 630729 630741, overlap 630737 630734 CTACATTATAATTAA TATGATGAGGTAGA ATA TCTACCTCATCATA TTAATTATAAGAGAA TERM 880 630741 - 630771 + F 100 -18.6 -3.44146 | opp_overlap 630741 630737 630734, overlap 630737 630729 CTACATTATAATTAA TATGATGAGGTAGA ATA TCTACCTCATCATA TTAATTATAAGAGAA CLL_A0631 630817 - 631362 + | hypothetical protein TERM 881 631508 - 631450 - f 100 -14.3 -3.6944 | gap 1, opp_overlap 631457, overlap 631451 631467 TTCCTAATATAAATA TTGTTAGGCGCATGAAAGATGATAAGTT AAAG AACTTATCATCTTTCATGCGCTTTA-AT TATTAAAAATTCTAA TERM 882 631507 - 631451 - f 100 -17.8 -2.81182 | gap 1, opp_overlap 631457, overlap 631450 631467 TCCTAATATAAATAT TGTTAGGCGCATGAAAGATGATAAGTT AAAG AACTTATCATCTTTCATGCGCTTTA-A TTATTAAAAATTCTA TERM 883 631457 - 631502 + F 100 -28.1 -4.07618 | opp_overlap 631451 631450 631467 TATAAATATTGTTAG GCGCATGAAAGATGATAAGTT AAAG AACTTATCATCTTTCATGCGC TTTAATTATTAAAAA TERM 884 631492 - 631467 - f 95 -12.1 -3.73775 | opp_overlap 631457, overlap 631451 631450 GTTAGGCGCATGAAA GATGATAAGTT AAAG AACTTATCATC TTTCATGCGCTTTAA TERM 885 633200 - 633185 - g 74 -6.2 -4.49353 | TTACAAGACAAGAAA GTATCA TGGT TGATAC CAAAAGACATGCCAT CLL_A0632 631903 - 634464 + | selenium-dependent molybdenum hydroxylase 1 CLL_A0633 634470 - 634658 + | hypothetical protein hydA 634690 - 636081 + | dihydropyrimidinase TERM 886 636197 - 636147 - T 100 -17.3 -3.42124 | opp_overlap 636153 636156 636158 636188 636195, overlap 636148 636153 636158 TAAAATCACTGATAA CTAGAATAAAAGGTTGTCTCAAA ATATA TTTGAGGCAACCTCTTATTCTAA ATAGGCATTTATTTT TERM 887 636196 - 636148 - T 100 -18.6 -2.64551 | opp_overlap 636153 636156 636158 636188 636195, overlap 636147 636153 636158 AAAATCACTGATAAC TAGAATAAAAGGTTGTCTCAAA ATATA TTTGAGGCAACCTCTTATTCTA AATAGGCATTTATTT TERM 888 636153 - 636191 + T 95 -12.7 -3.36175 | opp_overlap 636153 636148 636147 636158, overlap 636156 636158 636188 CACTGATAACTAGAA TAAAAGGTTGTCTCAAA ATATA TTTGAGGCAACCTCTTA TTCTAAATAGGCATT TERM 889 636191 - 636153 - T 95 -12.7 -3.57039 | opp_overlap 636153 636156 636158 636188, overlap 636148 636147 636158 CACTGATAACTAGAA TAAAAGGTTGTCTCAAA ATATA TTTGAGGCAACCTCTTA TTCTAAATAGGCATT TERM 890 636156 - 636188 + T 90 -10 -3.8211 | opp_overlap 636153 636148 636147 636158, overlap 636153 636158 TGATAACTAGAATAA AAGGTTGTCTCAAA ATATA TTTGAGGCAACCTC TTATTCTAAATAGGC TERM 891 636158 - 636186 + T 95 -12.6 -3.49568 | opp_overlap 636158 636153 636148 636147, overlap 636156 636153 ATAACTAGAATAAAA GGTTGTCTCAAA ATATA TTTGAGGCAACC TCTTATTCTAAATAG TERM 892 636186 - 636158 - T 100 -10.4 -4.85396 | opp_overlap 636156 636153 636158, overlap 636153 636148 636147 ATAACTAGAATAAAA GGTTGTCTCAAA ATATA TTTGAGGCAACC TCTTATTCTAAATAG TERM 893 636195 - 636208 + T 73 -2.5 -5.68039 | opp_overlap 636148 636147, overlap 636188 GGCAACCTCTTATTC TAAAT AGGC ATTTA TTTTTTTATGGCTTT CLL_A0635 636726 - 636253 - | cytidine/deoxycytidylate deaminase family protein TERM 894 636994 - 636948 - H 100 -15.1 -4.44461 | gap 1, opp_overlap 636951 636963, overlap 636974 AATAAGTTTATAAAA TAGTTATTATCAAAATGATAAA TAAA TTTATCATTTTGATAATA-CTA ACAAAGAGTTTATAG TERM 895 637043 - 637019 - H 77 -8.8 -3.43446 | overlap 637017 637024 637039 TTATAGCTAATAATA GGTAATTTAA TAATT TTAAATTACC AAAATGATAAAGAAA TERM 896 637349 - 637320 - H 71 -6.6 -4.15453 | opp_overlap 637320 637324 GAAGTTATGTTAAAA TATAGCAGAGAA ATATAA TTCTATGCTATA TAAATTTTATGGAGG CLL_A0636 637371 - 639662 + | 4-hydroxybenzoyl-CoA reductase subunit alpha TERM 897 640263 - 640250 - g 73 -5.3 -4.70583 | TTTAGTAATAGAAAA GCTAT GGAT ATAGC AATGGTTAGTGTAGC CLL_A0637 639680 - 640552 + | xanthine dehydrogenase FAD-binding subunit CLL_A0638 640554 - 641027 + | xanthine dehydrogenase family protein, iron-sulfur binding subunit TERM 898 641419 - 641435 + G 70 -8.7 -2.56164 | overlap 641401 641418 641431 CTTGCTATGTATGCA GGAGCTG TTG CAGTTCC ATTAATAATTGGAGC CLL_A0639 641314 - 642702 + | xanthine permease TERM 899 642792 - 642768 - f 78 -5.9 -5.05228 | opp_overlap 642767 642768 642774 642774 642782, overlap 642774 ATCAAATTACAAAAA TTAAAAGTTTA TAT TAAACTTGTAA GTTTGTTTGGAACAA TERM 900 642820 - 642774 - f 88 -8.5 -4.82678 | opp_overlap 642768 642767 642774 642774 642782 642794 642795, overlap 642768 TTACAAAAATTAAAA GTTTATATTAAACTTGT AAGTTTGTTTGGA ACAAGTTTAATATAAAC TAAATTACATATAAA TERM 901 643514 - 643528 + G 71 -7.2 -3.86346 | TGAGAATAATGCCAA TAAACC TAA GGTTTA TTTATCAGGAAGTGC CLL_A0640 642936 - 643967 + | iron ABC transporter substrate-binding protein TERM 902 644020 - 644043 + G 73 -9 -2.73994 | opp_overlap 644019 644020 644022, overlap 644022 ATTGTTGTTAATAAT TATCTCTCTA TTAA TAGGGAGATA TCATATTAAACCAAT CLL_A0641 643964 - 644953 + | iron chelate update ABC transporter, FeCT family, permease protein TERM 903 645349 - 645331 - g 89 -6.2 -5.45726 | GATATTTTAAAAAAA TTAAATAT AGA ATATTTAA AAGATAAGTATATAA CLL_A0642 644950 - 645729 + | putative iron ABC transporter, ATP-binding protein CLL_A0643 645803 - 646600 + | conserved hypothetical protein TIGR03172 TERM 904 647350 - 647330 - g 80 -9.9 -2.95093 | opp_overlap 647328 647330 647335, overlap 647329 ATATGTTAATGAAAC TCCAATTTT TGC AAAATTGGA TGGTATAGTACGTGG TERM 905 647330 - 647350 + G 78 -9.9 -2.66964 | opp_overlap 647330 647329, overlap 647328 647335 ATATGTTAATGAAAC TCCAATTTT TGC AAAATTGGA TGGTATAGTACGTGG CLL_A0644 646737 - 647525 + | selenium-dependent molybdenum hydroxylase system protein, YqeB family CLL_A0645 647622 - 648242 + | selenium metabolism protein YedF selD 648382 - 649419 + | selenide, water dikinase hgdC 650834 - 651595 + | 2-hydroxyglutaryl-CoA dehydratase component A CLL_A0650 651943 - 652536 + | hypothetical protein CLL_A0651 652541 - 653605 + | putative xanthine dehydrogenase accessory factor cbiQ 653857 - 654669 + | cobalt ABC transporter, permease protein CbiQ CLL_A0653 654678 - 655514 + | cobalt import ATP-binding protein CbiO 2 TERM 906 655843 - 655867 + F 73 -7.3 -4.12254 | opp_overlap 655842 655843 CTATATATGGACAAG TCTCTTTTAAT GTT ATTTAAAGAGA TTATTTATGATGCTA cbiM 655942 - 656688 + | cobalamin biosynthesis protein CbiM CLL_A0655 656691 - 657011 + | cobalt/cobalamin transport protein CbiN TERM 907 657077 - 657109 + F 100 -10.2 -5.66684 | opp_overlap 657077 657079 TAGAGCATTAGTTAA TAGTAGATAATTTT TTATT AGAATTATCTACTA TTTTTTTGTGGCTTA CLL_A0656 657286 - 657432 + | hypothetical protein CLL_A0657 657504 - 657638 + | hypothetical protein TERM 908 657686 - 657662 - T 78 -6.6 -4.90002 | gap 1, opp_overlap 657662, overlap 657657 CAACATATAACAAAA GAGTTAG-CAA AAAT TTGTCTAACTC TTTTTAAATTAAGGT TERM 909 657662 - 657686 + T 78 -6.6 -4.74504 | gap 1, opp_overlap 657662 657657 CAACATATAACAAAA GAGTTAG-CAA AAAT TTGTCTAACTC TTTTTAAATTAAGGT CLL_A0658 658328 - 657723 - | TetR-family transcriptional regulator TERM 910 658421 - 658463 + H 81 -10.3 -2.59881 | opp_overlap 658421, overlap 658420 GATTAGTTAATTAGA TGTTTTAAGTATACATAAT AGATA ATTATGTATATATAAAACA ATTCTAGGATAAATA TERM 911 658564 - 658553 - H 70 -3 -5.5762 | opp_overlap 658553, overlap 658546 ATTAAATAGAAAAAA TAAC GATC GTTA TTTTTTTGAGCTGTT TERM 912 658553 - 658564 + H 70 -3 -5.46629 | opp_overlap 658553 658546 ATTAAATAGAAAAAA TAAC GATC GTTA TTTTTTTGAGCTGTT CLL_A0659 658596 - 659519 + | hypothetical protein TERM 913 659574 - 659537 - f 95 -9.5 -4.85267 | gap 1, opp_overlap 659536 659535 659531 659539, overlap 659572 ATAAATTATTAAAAA GAGTATTCATAGAGGATT AAA AATT-TCTATGAATACTC CATTAATTTAAGGAG CLL_A0660 659598 - 661097 + | hypothetical protein CLL_A0661 661100 - 662254 + | putative oxidoreductase CLL_A0662 662389 - 663555 + | hypothetical protein CLL_A0663 663758 - 665713 + | aco operon expression regulatory protein TERM 914 665727 - 665773 + F 100 -8.3 -5.45802 | opp_overlap 665727 665753 GAGACTAAAAAATAG TGAGTGTATCAAAATGAGAAA ACAAA TGTATCATTTTGATGCACTTA TTTTTATTTTAGAAC CLL_A0664 665967 - 667040 + | (R,R)-butanediol dehydrogenase CLL_A0665 667061 - 667948 + | conserved electron-transfer protein gltA 667951 - 669342 + | glutamate synthase (NADPH), homotetrameric TERM 915 669408 - 669378 - f 85 -8.4 -4.67353 | opp_overlap 669378 GCACGCATTCAAAAA GGACATTACTAATA AAT TTTTAGTAATGGCC TTTTTTACATTTAAA TERM 916 669378 - 669408 + F 95 -8.4 -5.22039 | opp_overlap 669378 GCACGCATTCAAAAA GGACATTACTAATA AAT TTTTAGTAATGGCC TTTTTTACATTTAAA CLL_A0667 669679 - 671388 + | methyl-accepting chemotaxis protein TERM 917 671725 - 671707 - g 78 -6 -4.97158 | overlap 671697 TGATACTAAACAAAA TGTTGAGT CAA ACTCTACA ACAGAAGATACTGAC CLL_A0668 671594 - 672280 + | peptidyl-prolyl cis-trans isomerase, cyclophilin-type TERM 918 672295 - 672328 + F 74 -4.7 -5.1925 | opp_overlap 672286 672295, overlap 672286 GAAAATTATTATTAA TATATCATCATTGCT TCTA AGTTTTGATGATATA TTTTTTGCGTTATAA CLL_A0669 672363 - 673076 + | hypothetical protein CLL_A0670 673380 - 673895 + | GnaT-family acetyltransferase CLL_A0671 674082 - 674948 + | oxidoreductase, short chain dehydrogenase/reductase family TERM 919 675026 - 674976 - f 100 -15.9 -3.66908 | opp_overlap 674982, overlap 674982 TGTTTTTAAAATTAA TTAAAATAAGGCTTAAATTTTGC ATATA GCATAATTTAAGCCTTATTTTTA GTTGAGTGTGAATTG TERM 920 675020 - 674982 - f 100 -14.9 -4.5528 | opp_overlap 674982, overlap 674976 TAAAATTAATTAAAA TAAGGCTTAAATTTTGC ATATA GCATAATTTAAGCCTTA TTTTTAGTTGAGTGT TERM 921 674982 - 675020 + F 100 -14.9 -4.89009 | opp_overlap 674976 674982 TAAAATTAATTAAAA TAAGGCTTAAATTTTGC ATATA GCATAATTTAAGCCTTA TTTTTAGTTGAGTGT CLL_A0672 675112 - 675843 + | hydrolase, alpha/beta hydrolase fold family TERM 922 675864 - 675888 + F 86 -3.8 -6.0458 | gap 1, opp_overlap 675864 TTATAAATTAAAAGA TGATTTCT-TA AATA TATAGAAATCA TTTTTTTTAGTTTAT CLL_A0673 676135 - 677121 + | 3-oxoacyl-[acyl-carrier-protein] synthase III TERM 923 677328 - 677305 - g 79 -9.7 -3.17739 | opp_overlap 677304, overlap 677303 AAGAAATAGAAAGTA TAGCTCTTG GAGGAT CAAGAGCTA CTAAATTAAATGATA TERM 924 677725 - 677711 - g 77 -2.9 -5.74122 | opp_overlap 677723 677724 TATTATAGAAAAAAA TCTAA AATTA TTAGA TGGATATATTCCATC CLL_A0674 677247 - 678035 + | nucleotidyltransferase domain protein TERM 925 678101 - 678071 - T 100 -9.9 -5.96894 | opp_overlap 678071 AGTGAAATAAAAAAA TATATCCTTAGGA TAAAT TCCTAGGGATATA TTTTTTATTTGTTAG TERM 926 678071 - 678101 + T 100 -12.1 -5.80003 | opp_overlap 678071 AGTGAAATAAAAAAA TATATCCTTAGGA TAAAT TCCTAGGGATATA TTTTTTATTTGTTAG CLL_A0675 678288 - 678106 - | hypothetical protein CLL_A0676 678940 - 678398 - | hypothetical protein CLL_A0677 679213 - 679587 + | putative endoribonuclease L-PSP TERM 927 679785 - 679750 - T 100 -15 -4.2679 | opp_overlap 679756, overlap 679751 679756 TAAGTTTTACTAAAA TCAAAATGAGCCTTAA TATT TTAAGGCTCATTTTGG CGTCCCATTATCTTC TERM 928 679784 - 679751 - T 100 -18.5 -3.15592 | opp_overlap 679756, overlap 679750 679756 AAGTTTTACTAAAAT CAAAATGAGCCTTAA TATT TTAAGGCTCATTTTG GCGTCCCATTATCTT TERM 929 679779 - 679756 - T 100 -12.6 -4.70319 | opp_overlap 679756, overlap 679751 679750 TTACTAAAATCAAAA TGAGCCTTAA TATT TTAAGGCTCA TTTTGGCGTCCCATT TERM 930 679756 - 679779 + T 100 -12.6 -4.14511 | opp_overlap 679751 679750 679756 TTACTAAAATCAAAA TGAGCCTTAA TATT TTAAGGCTCA TTTTGGCGTCCCATT CLL_A0678 680236 - 679793 - | hypothetical protein CLL_A0679 680414 - 680713 + | hypothetical protein TERM 931 680736 - 680791 + T 100 -12.4 -3.86995 | opp_overlap 680741 680742 680752, overlap 680741 680752 AGATATAAATAAATT TAATAGTAAATAAAAATAGTTGAGAT TAAA ATCTCAACTATTTTTGTTTAATGTAA TTATTCTAAATTTAA TERM 932 680741 - 680786 + T 100 -14.5 -3.04443 | opp_overlap 680741 680742 680752, overlap 680736 680752 TAAATAAATTTAATA GTAAATAAAAATAGTTGAGAT TAAA ATCTCAACTATTTTTGTTTAA TGTAATTATTCTAAA TERM 933 680786 - 680741 - T 93 -12.3 -3.26841 | opp_overlap 680736 680741 680752, overlap 680742 680752 TAAATAAATTTAATA GTAAATAAAAATAGTTGAGAT TAAA ATCTCAACTATTTTTGTTTAA TGTAATTATTCTAAA TERM 934 680785 - 680742 - T 100 -15.8 -2.5502 | opp_overlap 680741 680736 680752, overlap 680741 680752 AAATAAATTTAATAG TAAATAAAAATAGTTGAGAT TAAA ATCTCAACTATTTTTGTTTA ATGTAATTATTCTAA TERM 935 680775 - 680752 - T 100 -11.2 -5.37171 | opp_overlap 680741 680736 680752, overlap 680742 680741 AATAGTAAATAAAAA TAGTTGAGAT TAAA ATCTCAACTA TTTTTGTTTAATGTA TERM 936 680752 - 680775 + T 100 -11.2 -5.35815 | opp_overlap 680752 680742 680741, overlap 680741 680736 AATAGTAAATAAAAA TAGTTGAGAT TAAA ATCTCAACTA TTTTTGTTTAATGTA TERM 937 680798 - 680810 + T 70 -3.5 -5.34555 | TTAATGTAATTATTC TAAAT TTA ATTTA TTTTTTATGATGTAA CLL_A0680 681604 - 680792 - | ABC transporter permease protein TERM 938 681258 - 681244 - G 71 -7.2 -3.85835 | overlap 681236 AAATAAATACTGAAA GTATTG CAA CAATAC CACTAACTATAGTCC CLL_A0681 682302 - 681598 - | ABC transporter, ATP-binding protein CLL_A0682 682670 - 682302 - | transcriptional regulator, GntR family TERM 939 682499 - 682511 + g 70 -4.8 -4.8066 | AGTTTTTTCGTTCAA GCTC AGTAA GAGC TTTTTGCATTGTATT TERM 940 682682 - 682721 + H 74 -8.9 -3.00544 | opp_overlap 682713 CCATATTTTCAACTC CTTGTACTATTGTATTA ATAACG TAATACAATAGTACAGC TATATACTAATTTTG CLL_A0683 682897 - 683154 + | hypothetical protein TERM 941 683199 - 683233 + T 100 -11.7 -4.46514 | opp_overlap 683199, overlap 683232 AGTGAATAATAAAAA TAAGGAGCAATTAAT GTTTG ATTAAGTGCTCCTTA TTTATTTACATAGAT TERM 942 683233 - 683199 - T 100 -11.7 -5.30348 | opp_overlap 683199 683232 AGTGAATAATAAAAA TAAGGAGCAATTAAT GTTTG ATTAAGTGCTCCTTA TTTATTTACATAGAT CLL_A0684 683924 - 683250 - | iron-sulfur binding protein TERM 943 683599 - 683646 + g 88 -9.6 -4.13254 | gap 1, opp_overlap 683611 683614 ATTTGAACTGGCCAT TGATTTAATTGA-GAAGACACAA TAG TTGTTTCTTCATTAGTTAAATCA TTATTATTTAAATTT TERM 944 683997 - 684030 + H 72 -9.1 -2.74605 | opp_overlap 683997 683996 684004, overlap 684004 ATAGTATAGAGAAAG TTTTAAATCTGTTTC AAAT GTAACAGATTTAAAG TGAATTTTAGAAAAA CLL_A0685 684195 - 685379 + | putative D-alanine transferase CLL_A0686 685348 - 685488 + | hypothetical protein TERM 945 685717 - 685685 - g 80 -5.7 -5.18866 | CGGAAATAAAGAAAA TTTAATGATGGCATC TAT GATATCAGCATTAAA ATGTGGAAGAGCATA CLL_A0687 685506 - 687020 + | putative D-alanine-activating enzyme CLL_A0688 687020 - 688174 + | protein DltB dltC 688253 - 688480 + | D-alanyl carrier protein TERM 946 688525 - 688493 - T 100 -13.1 -5.04222 | opp_overlap 688486 688493 TAAGGAAATTAAAAA GTTCTCTTTATAATT TTA AATTATAAAAAGAAC TTTTTTTGTTTTTTT TERM 947 688493 - 688525 + T 100 -10.9 -6.32976 | opp_overlap 688493, overlap 688486 TAAGGAAATTAAAAA GTTCTCTTTATAATT TTA AATTATAAAAAGAAC TTTTTTTGTTTTTTT TERM 948 689304 - 689329 + T 100 -11.9 -4.41956 | opp_overlap 689306, overlap 689306 TCGCCTCCACCATGA AACCCACGACA GAAA TGTCGTGGGTC TTTTCATGTATATAT TERM 949 689327 - 689306 - T 100 -14.5 -3.78775 | opp_overlap 689304 689306 GCCTCCACCATGAAA CCCACGACA GAAA TGTCGTGGG TCTTTTCATGTATAT TERM 950 689306 - 689327 + T 100 -14.5 -3.80595 | opp_overlap 689306, overlap 689304 GCCTCCACCATGAAA CCCACGACA GAAA TGTCGTGGG TCTTTTCATGTATAT CLL_A0691 691899 - 689383 - | transcriptional regulator, AraC family TERM 951 690728 - 690717 - G 75 -5.8 -4.80487 | opp_overlap 690716 690717 TATAAGTAAAACAAA GCTC TGGT GAGC CTTCTTCATTTTCAG TERM 952 691054 - 691082 + g 82 -9.7 -3.44915 | overlap 691053 ATTTATACTTTCTGT CATGCTCTTCTGA CCA TCAGAAGAATATG TATCTATTTTTTTAC TERM 953 692021 - 692002 - H 73 -2.2 -5.77734 | opp_overlap 692002 AAAGAAAAATAAAAA TGAAAACT GCAA AGTTTTAA TATTTTAACTGTAAA CLL_A0692 692209 - 693144 + | NADPH-dependent fmn reductase domain protein TERM 954 693162 - 693199 + F 100 -12.3 -4.4009 | opp_overlap 693165, overlap 693165 AATCAAATCCATATA AAATCTACGACAATTAA AATA TTGATTGTCGTAGATTA TTTTGTGCCATACAA TERM 955 693165 - 693196 + F 100 -14 -4.32067 | opp_overlap 693165, overlap 693162 CAAATCCATATAAAA TCTACGACAATTAA AATA TTGATTGTCGTAGA TTATTTTGTGCCATA TERM 956 693196 - 693165 - f 100 -11.8 -4.59081 | opp_overlap 693162 693165 CAAATCCATATAAAA TCTACGACAATTAA AATA TTGATTGTCGTAGA TTATTTTGTGCCATA TERM 957 693330 - 693363 + G 86 -10.6 -3.30441 | ATTTAGTGCGTTTAT TGCAACATTTAATG AAACTA TATTAAATGTTGCA TTATCAGGAATAATG CLL_A0693 693265 - 694686 + | lincomycin resistance protein LmrB TERM 958 694813 - 694840 + T 100 -12.8 -4.371 | opp_overlap 694816, overlap 694816 TTCGCCTCCACCATG AAACCCACGACA GAAA TGTCGTGGGTTA TTTTAATGTCATAAA TERM 959 694837 - 694816 - T 100 -14.5 -3.78775 | opp_overlap 694813 694816 GCCTCCACCATGAAA CCCACGACA GAAA TGTCGTGGG TTATTTTAATGTCAT TERM 960 694816 - 694837 + T 100 -14.5 -4.29905 | opp_overlap 694816, overlap 694813 GCCTCCACCATGAAA CCCACGACA GAAA TGTCGTGGG TTATTTTAATGTCAT CLL_A0694 695248 - 694838 - | hypothetical protein TERM 961 695185 - 695199 + g 70 -8.6 -2.65068 | overlap 695184 TAGAATGAAACTTTT GTAGCA TTA TGCTAC CTTCTCCATCTATTA TERM 962 696579 - 696563 - g 82 -8.1 -4.45083 | opp_overlap 696565 CCTATAGCTAGAAAA TACTTTG ATT CAAAGTA TAATCAATCGGTAGA CLL_A0695 695591 - 696934 + | hypothetical protein TERM 963 696950 - 696985 + F 100 -10.8 -5.74122 | gap 1 ATTGTAATATCATTT TAAGGAACATACTTCTA CGT TA-AGGTATGTTCCTTA TTTTTTTATATAATA TERM 964 697675 - 697699 + F 74 -5 -5.19275 | TGTGAGCTTGATTTA GATGTGGGAG GATGA CTTTCGCATC TTTTCTTTTGTGCGT CLL_A0696 697973 - 698983 + | hypothetical protein CLL_A0697 699291 - 699025 - | hypothetical protein CLL_A0698 699876 - 700592 + | CoA-transferase, A subunit CLL_A0699 700605 - 701258 + | CoA-transferase, B subunit TERM 965 701358 - 701377 + T 93 -6.5 -5.86976 | opp_overlap 701358 CATAGAAGAAAAAAA CTGTACA TTTATT TGTACAG TTTTTTATTTTATAG TERM 966 701377 - 701358 - T 93 -6.5 -5.9218 | opp_overlap 701358 CATAGAAGAAAAAAA CTGTACA TTTATT TGTACAG TTTTTTATTTTATAG CLL_A0700 702600 - 701596 - | putative oxidoreductase YgjR TERM 967 701818 - 701833 + g 70 -4.8 -4.79683 | ATTGTACACTAATTT TACATT TTCG AATGTA TTTATTTTGTCAATT TERM 968 702040 - 702023 - G 70 -5.7 -4.41348 | GGTTTTCCAAATAAA TTTATCA TGGG TGATAAA CAATATATACCTATA TERM 969 703134 - 703124 - g 76 -4 -5.41143 | overlap 703133 GATGTTCCAAAAAAA TGTT CAT AACA ATAAATATTGTACTA CLL_A0701 702951 - 704162 + | FliB family protein TERM 970 704181 - 704237 + F 100 -11.3 -3.94471 | gap 1, opp_overlap 704181 704186, overlap 704186 AAAATAAGTAGATTA TAGAATGAGCCGTTGC-CAAATTAAC AGATTA GTTGATTTGAGTAACAGCTCATTTTA TATTTATTTTAAAAT TERM 971 704186 - 704232 + F 100 -9 -4.95487 | gap 1, opp_overlap 704181 704186, overlap 704181 AAGTAGATTATAGAA TGAGCCGTTGC-CAAATTAAC AGATTA GTTGATTTGAGTAACAGCTCA TTTTATATTTATTTT CLL_A0702 704319 - 705059 + | hypothetical protein CLL_A0703 705162 - 706010 + | transcriptional regulator, AraC/XylS family TERM 972 706045 - 706066 + T 77 -7.3 -4.49756 | opp_overlap 706045, overlap 706040 ATTTATACTAAAAAA TCCACGACA GAAA TATCGTGGA TTTTAATATTTAAAA TERM 973 706066 - 706045 - T 100 -9.5 -5.22312 | opp_overlap 706045 706040 ATTTATACTAAAAAA TCCACGACA GAAA TATCGTGGA TTTTAATATTTAAAA CLL_A0704 706659 - 706111 - | hypothetical protein CLL_A0705 707538 - 706861 - | CRP TERM 974 707572 - 707560 - H 70 -3.5 -5.28778 | opp_overlap 707571, overlap 707571 ACCATCTATAAAAAA TATTT ATT AAATA GATTGTAGCCTATAC TERM 975 707571 - 707596 + H 86 -9.2 -4.18401 | opp_overlap 707560 707571 AAAATATTTATTAAA TAGATTGTAG CCTATA CTACAATCTA TTTTCAAGTATCTAG TERM 976 707596 - 707571 - H 90 -9.9 -3.81154 | opp_overlap 707571, overlap 707560 AAAATATTTATTAAA TAGATTGTAGC CTAT ACTACAATCTA TTTTCAAGTATCTAG CLL_A0706 707657 - 708850 + | probable transporter TERM 977 708890 - 708921 + F 100 -14.7 -5.00642 | AAATAATGCTTTTTA GACCTTGGTAATT AAAAAG AATTACCAAGGTC TTTTTATATAAATTA CLL_A0707 709058 - 709483 + | flavodoxin CLL_A0708 709498 - 710151 + | hypothetical protein TERM 978 710188 - 710235 + T 100 -27.6 -4.16943 | opp_overlap 710188 710194 AATATTAGTTGAGAA GTTAAAGTGAAGAGTTAAGGAA AAAA TTCCTTAACTCTTCACTTTAAC TTTTGCACTCTCAAC TERM 979 710235 - 710188 - T 100 -27.6 -3.34787 | opp_overlap 710188, overlap 710194 AATATTAGTTGAGAA GTTAAAGTGAAGAGTTAAGGAA AAAA TTCCTTAACTCTTCACTTTAAC TTTTGCACTCTCAAC TERM 980 710229 - 710194 - T 100 -20.8 -3.80893 | opp_overlap 710188, overlap 710188 AGTTGAGAAGTTAAA GTGAAGAGTTAAGGAA AAAA TTCCTTAACTCTTCAC TTTAACTTTTGCACT TERM 981 710258 - 710274 + T 79 -3.6 -5.71712 | opp_overlap 710258 CTCTCAACTAAAAAA CGTGAC ATAAA GCCACG TTTTTTTATGTAAAG TERM 982 710274 - 710258 - T 78 -5.8 -5.26875 | opp_overlap 710258 CTCTCAACTAAAAAA CGTGAC ATAAA GCCACG TTTTTTTATGTAAAG CLL_A0709 710837 - 710331 - | hypothetical protein CLL_A0710 711160 - 711312 + | hypothetical protein CLL_A0711 711506 - 712408 + | HD hydrolase superfamily protein CLL_A0712 712658 - 713491 + | AP endonuclease, family 2 TERM 983 713499 - 713518 + F 91 -7.2 -5.61881 | opp_overlap 713499 AGAAATAATTTTAAA GGGATTCT GATT AGAATCTC TTTTTATTTTTAGGA TERM 984 714410 - 714398 - g 72 -6.3 -4.38774 | AAGAGTATATGAAAA TACAG AGG CTGTA AAAGTACTCTATAAT CLL_A0713 713784 - 715001 + | putative oxidoreductase TERM 985 715064 - 715027 - f 100 -14.6 -3.67775 | opp_overlap 715027 715030 715062 715062, overlap 715030 ATTGTTATTTAAGAA TAAGCTATATAATGAA ATTGAA TTCATTATATAGCTTA TTATAATTTAATAAT TERM 986 715027 - 715064 + F 100 -14.6 -3.63251 | opp_overlap 715027 715030, overlap 715030 715062 715062 ATTGTTATTTAAGAA TAAGCTATATAATGAA ATTGAA TTCATTATATAGCTTA TTATAATTTAATAAT TERM 987 715061 - 715030 - f 100 -11.9 -3.97307 | opp_overlap 715027 715030, overlap 715027 GTTATTTAAGAATAA GCTATATAATGAA ATTGAA TTCATTATATAGC TTATTATAATTTAAT TERM 988 715030 - 715061 + F 100 -11.9 -3.93819 | opp_overlap 715030 715027, overlap 715027 GTTATTTAAGAATAA GCTATATAATGAA ATTGAA TTCATTATATAGC TTATTATAATTTAAT TERM 989 716032 - 716066 + G 71 -8.1 -3.23042 | opp_overlap 716043, overlap 716021 716033 716043 AGAAGGACTAGCCAG TTCTTATAGAAGTTC ATTAG GAACTTCTATAAAAG TTAATGGTGGATATT TERM 990 716033 - 716065 + G 75 -9.4 -2.53343 | opp_overlap 716043, overlap 716021 716032 716043 GAAGGACTAGCCAGT TCTTATAGAAGTTC ATTAG GAACTTCTATAAAA GTTAATGGTGGATAT CLL_A0714 715352 - 716590 + | ErfK/YbiS/YcfS/YnhG family TERM 991 716605 - 716633 + F 84 -4.7 -5.73978 | opp_overlap 716599 716606 AATATAGTATAGAAA GTCTAATGTAG AATAAAA TTACATTAGGC TTTTTTGTTTATCCT TERM 992 716863 - 716805 - f 100 -11.6 -4.24606 | gap 3, opp_overlap 716806 716820 716822 716822, overlap 716806 716808 716810 AATTGACATTGAAAA CGATATGGCATATCATATTGGTATAGACC AATT GGTATATACCAATATGATATGCCA-A--G ATGGGGGAGATAAAA TERM 993 716864 - 716806 - f 100 -14.3 -3.1404 | gap 1, opp_overlap 716806 716820 716822 716822, overlap 716805 716808 716810 ATTGACATTGAAAAC GATATGGCATATCATATTGGTATAGACC AATT GGTATATACCAATATGATATGCCA-AGA TGGGGGAGATAAAAT TERM 994 716862 - 716808 - f 100 -21.3 -3.12666 | gap 1, opp_overlap 716806 716820 716822 716822, overlap 716805 716806 716810 TGACATTGAAAACGA TATGGCATATCATATTGGTATAGACC AATT GGTATATACCAATATGATATGCCA-A GATGGGGGAGATAAA TERM 995 716861 - 716810 - f 100 -26.4 -3.11683 | opp_overlap 716806 716820 716822 716822, overlap 716808 716805 716806 ACATTGAAAACGATA TGGCATATCATATTGGTATAGACC AATT GGTATATACCAATATGATATGCCA AGATGGGGGAGATAA TERM 996 716820 - 716851 + F 86 -11.8 -2.62396 | opp_overlap 716810 716808 716805 716806, overlap 716822 716822 CGATATGGCATATCA TATTGGTATAGACC AATT GGTATATACCAATA TGATATGCCAAGATG TERM 997 716822 - 716849 + F 80 -10 -2.85351 | opp_overlap 716810 716808 716805 716806, overlap 716822 716820 ATATGGCATATCATA TTGGTATAGACC AATT GGTATATACCAA TATGATATGCCAAGA CLL_A0715 716879 - 717616 + | GntR-family transcriptional regulator nagA 717641 - 718774 + | N-acetylglucosamine-6-phosphate deacetylase nagB 718884 - 719633 + | glucosamine-6-phosphate isomerase nagE 719680 - 721107 + | pts system, N-acetylglucosamine-specific iibc component CLL_A0719 721204 - 721878 + | copper homeostasis protein CutC TERM 998 722189 - 722158 - f 70 -2.5 -5.46657 | gap 1, opp_overlap 722132 722132 722162, overlap 722134 722132 722162 GACTTTAATAAAAAA TAAAGTTG-ACAAT ATAAA ATTGTACAACTATA ATTATTCACATATTT CLL_A0720 722229 - 722798 + | BioY family protein TERM 999 723535 - 723517 - g 70 -3.2 -5.28166 | GAAAATCAAGAAAAA TTATCTTA TGA TGAGATAA CAAAAACATTTGCGT bioB 722782 - 723738 + | biotin synthase bioD 723741 - 724424 + | dethiobiotin synthase CLL_A0723 725427 - 724600 - | multidrug-efflux transporter 2 regulator TERM 1000 725715 - 725702 - H 70 -3.9 -5.14985 | TTAAATATAGAAAAA TTAGT ACAA ACTAA TTAGGAATAATTTAA CLL_A0724 725802 - 727529 + | ABC transporter, ATP-binding/permease protein CLL_A0725 727529 - 729310 + | lipid A export ATP-binding/permease protein MsbA TERM 1001 729449 - 729495 + T 81 -5.5 -5.3104 | gap 1, opp_overlap 729451, overlap 729451 TCCCACTTTCTGATA AAGTATCAAGTAGTTGTACTGT TTCT ATA-TACAGCTATTTGATACTA TTTTATTTTTAATAC TERM 1002 729451 - 729493 + T 80 -8.1 -4.26857 | gap 1, opp_overlap 729451, overlap 729449 CCACTTTCTGATAAA GTATCAAGTAGTTGTACTGT TTCT ATA-TACAGCTATTTGATAC TATTTTATTTTTAAT ilvN 729786 - 729493 - | acetolactate synthase, small subunit ilvB 731458 - 729779 - | acetolactate synthase, large subunit, biosynthetic type TERM 1003 730158 - 730180 + g 72 -5.7 -4.51743 | ATTGAACCATCACCA GAAAAGCAA ATAAC TTGTTTTTC TTTATTTGCTAATGC TERM 1004 731533 - 731506 - H 84 -4.9 -5.77988 | AGATATATAAAAAAA TCTTCATCCAA ATAAAA TAGGACGAAGA GAAGCTTACCTAGAT CLL_A0728 731988 - 732479 + | transcriptional regulator, CarD family CLL_A0729 732680 - 732835 + | hypothetical protein TERM 1005 732850 - 732887 + F 100 -20.3 -5.85737 | opp_overlap 732850 732853 GTTTTGTTTAATATA GAAGTGCTTTTAGTAAA GTAA TTTACTAAAAGCACTTC TTTTTTTGTTACTCT TERM 1006 732887 - 732850 - f 100 -20.3 -3.06696 | opp_overlap 732850, overlap 732853 GTTTTGTTTAATATA GAAGTGCTTTTAGTAAA GTAA TTTACTAAAAGCACTTC TTTTTTTGTTACTCT TERM 1007 732884 - 732853 - f 100 -16.2 -3.68024 | opp_overlap 732850, overlap 732850 TTGTTTAATATAGAA GTGCTTTTAGTAAA GTAA TTTACTAAAAGCAC TTCTTTTTTTGTTAC TERM 1008 732892 - 732934 + F 100 -18.2 -3.89215 | opp_overlap 732906, overlap 732894 AAAAGCACTTCTTTT TTTGTTACTCTAAAGTTATT AAA AATAACTTTAGAGTAACATA TTTAACTTTATCCAA TERM 1009 732894 - 732932 + F 100 -20.8 -3.53019 | opp_overlap 732906, overlap 732892 AAGCACTTCTTTTTT TGTTACTCTAAAGTTATT AAA AATAACTTTAGAGTAACA TATTTAACTTTATCC CLL_A0730 733445 - 735145 + | hypothetical protein TERM 1010 735631 - 735659 + F 83 -7.4 -4.96848 | opp_overlap 735633, overlap 735633 GTGGTATCGCGATTT AACCTCGTCCCT TTATT AGGGATGGGGTA TTTTTATATGCAAAA TERM 1011 735633 - 735657 + F 93 -10 -4.11141 | opp_overlap 735633, overlap 735631 GGTATCGCGATTTAA CCTCGTCCCT TTATT AGGGATGGGG TATTTTTATATGCAA brnQ 735756 - 737096 + | branched-chain amino acid transport system II carrier protein TERM 1012 737256 - 737277 + F 75 -3.8 -5.61881 | opp_overlap 737250 737247 TAAAATTTAGAAAAA CATACATT TAGTAT AATGTGTG TTTTTCTTTTTAGAA CLL_A0732 737306 - 737986 + | camp-binding domain TERM 1013 738169 - 738112 - T 83 -11.1 -2.58663 | opp_overlap 738113 738117, overlap 738117 738122 AGTTATTGTTACAAC GTAAAGAAAATGAGTTATTCAAAGAAT TATA ATCTTTTAAATAACTCATTTCCTTTAT GTATTTTAAAGAATT TERM 1014 738113 - 738168 + T 87 -10.2 -3.40175 | opp_overlap 738112 738117 738122, overlap 738117 GTTATTGTTACAACG TAAAGAAAATGAGTTATTCAAAGAAT TATA ATCTTTTAAATAACTCATTTCCTTTA TGTATTTTAAAGAAT TERM 1015 738164 - 738117 - T 95 -11 -3.80625 | opp_overlap 738113 738117, overlap 738112 738122 TTGTTACAACGTAAA GAAAATGAGTTATTCAAAGAAT TATA ATCTTTTAAATAACTCATTTCC TTTATGTATTTTAAA TERM 1016 738117 - 738164 + T 73 -6.6 -4.33956 | opp_overlap 738117 738112 738122, overlap 738113 TTGTTACAACGTAAA GAAAATGAGTTATTCAAAGAAT TATA ATCTTTTAAATAACTCATTTCC TTTATGTATTTTAAA TERM 1017 738159 - 738122 - T 83 -7.3 -4.94962 | opp_overlap 738117 738113, overlap 738117 738112 ACAACGTAAAGAAAA TGAGTTATTCAAAGAAT TATA ATCTTTTAAATAACTCA TTTCCTTTATGTATT CLL_A0733 738980 - 738201 - | deoxyribose operon repressor TERM 1018 739132 - 739107 - H 76 -2.1 -5.86465 | gap 1, opp_overlap 739115 739126, overlap 739115 739126 AATAATACAAAAAAA TAAATAAATTTC ATT GAAATT-ACTTA TAATAATTATATAAG deoC 739276 - 739941 + | deoxyribose-phosphate aldolase TERM 1019 740128 - 740186 + F 93 -9.4 -4.4078 | opp_overlap 740131 740133 740135 740139, overlap 740129 740131 GCCACTTAACCTATT ACATATATCAACACACATTTAAAA CAGAACTTAAT TTTTAAATGTGTGTTGATATATAA TTTTAGTTGAGAAAA TERM 1020 740129 - 740185 + F 95 -12.9 -3.24146 | opp_overlap 740131 740133 740135 740139, overlap 740128 740131 CCACTTAACCTATTA CATATATCAACACACATTTAAAA CAGAACTTAAT TTTTAAATGTGTGTTGATATATA ATTTTAGTTGAGAAA TERM 1021 740131 - 740183 + F 100 -15.5 -3.18268 | opp_overlap 740131 740133 740135 740139, overlap 740129 740128 ACTTAACCTATTACA TATATCAACACACATTTAAAA CAGAACTTAAT TTTTAAATGTGTGTTGATATA TAATTTTAGTTGAGA TERM 1022 740183 - 740131 - f 100 -15.5 -2.83112 | opp_overlap 740131 740129 740128, overlap 740133 740135 740139 ACTTAACCTATTACA TATATCAACACACATTTAAAA CAGAACTTAAT TTTTAAATGTGTGTTGATATA TAATTTTAGTTGAGA TERM 1023 740181 - 740133 - f 100 -13.7 -2.9627 | opp_overlap 740131 740129 740128, overlap 740131 740135 740139 TTAACCTATTACATA TATCAACACACATTTAAAA CAGAACTTAAT TTTTAAATGTGTGTTGATA TATAATTTTAGTTGA TERM 1024 740179 - 740135 - f 90 -11.9 -3.03214 | opp_overlap 740131 740129 740128, overlap 740133 740131 740139 AACCTATTACATATA TCAACACACATTTAAAA CAGAACTTAAT TTTTAAATGTGTGTTGA TATATAATTTTAGTT CLL_A0735 740385 - 741686 + | pyrimidine-nucleoside phosphorylase TERM 1025 741819 - 741781 - f 75 -9.2 -2.61925 | opp_overlap 741781, overlap 741779 741784 ATATATAAATAAAGG TAAGAGATTTTAATTATT TTT AATAATTGAAGTCTCTTA TTTGTTTGATCAGTT TERM 1026 741781 - 741819 + F 100 -13.6 -4.5123 | opp_overlap 741781 741779 741784 ATATATAAATAAAGG TAAGAGATTTTAATTATT TTT AATAATTGAAGTCTCTTA TTTGTTTGATCAGTT hcp 742118 - 743761 + | hydroxylamine reductase TERM 1027 743775 - 743811 + F 83 -6.9 -5.14698 | gap 1 AATATAATTTGTTAA GGGTAGTTA-TATAGA TATAAT TCTATAATAACTACTC TTTTATTTTAAATTT CLL_A0737 743902 - 744681 + | putative viral A-type inclusion protein CLL_A0738 744886 - 745587 + | putative conserved hypothetical protein TERM 1028 745612 - 745656 + F 100 -14.8 -2.78655 | gap 1, opp_overlap 745622, overlap 745622 TATTTTAGTTTGTTT TATAGAAAAAGGTGGATTTAT TTAT ATAAATCCACCTTTTTCT-TG TCAGTTGTTTTATAT TERM 1029 745647 - 745622 - f 100 -13.5 -4.96848 | opp_overlap 745612 745622 TGTTTTATAGAAAAA GGTGGATTTAT TTAT ATAAATCCACC TTTTTCTTGTCAGTT TERM 1030 745622 - 745647 + F 100 -13.5 -5.21236 | opp_overlap 745622, overlap 745612 TGTTTTATAGAAAAA GGTGGATTTAT TTAT ATAAATCCACC TTTTTCTTGTCAGTT TERM 1031 745782 - 745756 - f 77 -6.8 -4.70879 | opp_overlap 745750 745755 745756 745759 745762 TTTAAATGCTAAAAA TTACGATTTTTA TTG TAAAAATTGTAA ATTAATAGTATAATG TERM 1032 745756 - 745782 + F 72 -9 -2.5511 | opp_overlap 745756, overlap 745750 745755 745759 745762 TTTAAATGCTAAAAA TTACGATTTTTA TTG TAAAAATTGTAA ATTAATAGTATAATG TERM 1033 746117 - 746139 + G 78 -7.9 -4.42386 | opp_overlap 746117 ACTAGTGTTATATTA TTGAGTTTA AATTG TAAACTCAA TTTTATAAGTAACAG CLL_A0739 745832 - 746392 + | accessory gene regulator B superfamily CLL_A0740 746433 - 746555 + | hypothetical protein CLL_A0741 746583 - 747839 + | putative sensor histidine kinase TERM 1034 747898 - 747858 - f 100 -15.9 -2.5341 | opp_overlap 747864 747868, overlap 747864 747868 TTAAATAATACATAT TAAAAATAAAGTGTTGATA TTA TATCAACACTTTATTATTA GGTAAAATACTTTTT TERM 1035 747892 - 747864 - f 100 -14.9 -4.87037 | opp_overlap 747864 747868, overlap 747858 747868 AATACATATTAAAAA TAAAGTGTTGATA TTA TATCAACACTTTA TTATTAGGTAAAATA TERM 1036 747864 - 747892 + F 100 -14.9 -3.68073 | opp_overlap 747864 747858 747868, overlap 747868 AATACATATTAAAAA TAAAGTGTTGATA TTA TATCAACACTTTA TTATTAGGTAAAATA TERM 1037 747868 - 747888 + F 100 -11.3 -4.46854 | opp_overlap 747864 747858 747868, overlap 747864 CATATTAAAAATAAA GTGTTGATA TTA TATCAACAC TTTATTATTAGGTAA TERM 1038 747888 - 747868 - f 100 -11.3 -4.94262 | opp_overlap 747868 747864, overlap 747864 747858 CATATTAAAAATAAA GTGTTGATA TTA TATCAACAC TTTATTATTAGGTAA TERM 1039 748502 - 748480 - g 91 -7.9 -5.20781 | opp_overlap 748483 TAGTACAAAATAAAA TAATGGATT TTGAT AATCCATTA TTAAAGAATATTATG TERM 1040 748520 - 748535 + G 79 -3.4 -5.56673 | AAAGAATATTATGAT TATAAA TTTA TTTATA TTTTTTATTATAACT CLL_A0742 747942 - 749171 + | two-component sensor histidine kinase TERM 1041 749263 - 749220 - f 70 -8 -3.30243 | gap 1, opp_overlap 749214 ACTTATTTGTTATAA TATATTACTTAA-AAAAAGAT ATA ATATTTTTGTTAAGTAATATA AAATAATATTGACAA TERM 1042 749490 - 749466 - f 87 -10 -3.29947 | opp_overlap 749466 TATTTAGTATATTAA GCGCTAGAGA TTTAT TCTCTGGCGC TTTATTTATTATCTA TERM 1043 749466 - 749490 + F 100 -12.2 -4.76087 | opp_overlap 749466 TATTTAGTATATTAA GCGCTAGAGA TTTAT TCTCTGGCGC TTTATTTATTATCTA CLL_A0743 749633 - 750598 + | methionine import ATP-binding protein MetN CLL_A0744 750598 - 751236 + | D-methionine transport system permease protein MetI TERM 1044 751420 - 751406 - g 76 -4.2 -5.47964 | ATAAAACAATAAAAA TAGGTG TTA CCCCTA TACCACATAAAGAAA CLL_A0745 751285 - 752115 + | D-methionine-binding lipoprotein MetQ TERM 1045 752146 - 752177 + F 86 -4.6 -5.86976 | opp_overlap 752146 TTAAAAAGATGGAAA GTTAATGTATTTAA TATT TTATTTACATTAAC TTTTTTATTTTATAA CLL_A0746 752383 - 753345 + | hypothetical protein CLL_A0747 753380 - 754339 + | ribonuclease HI CLL_A0748 754428 - 754604 + | hypothetical protein TERM 1046 754666 - 754621 - f 73 -7.7 -3.79138 | opp_overlap 754621 754622, overlap 754622 AATATATTTATTAAA GGGGCTGTTACAAAACTAATT TGAA AGTTAGTTTTGTAACGGCTCA TTTTTTTGCTTTTTT TERM 1047 754621 - 754666 + F 100 -14.3 -5.88061 | opp_overlap 754621 754622, overlap 754622 AATATATTTATTAAA GGGGCTGTTACAAAACTAATT TGAA AGTTAGTTTTGTAACGGCTCA TTTTTTTGCTTTTTT TERM 1048 754665 - 754622 - f 85 -11.2 -2.8676 | opp_overlap 754621 754622, overlap 754621 ATATATTTATTAAAG GGGCTGTTACAAAACTAATT TGAA AGTTAGTTTTGTAACGGCTC ATTTTTTTGCTTTTT TERM 1049 754622 - 754665 + F 100 -17.8 -4.07346 | opp_overlap 754622 754621, overlap 754621 ATATATTTATTAAAG GGGCTGTTACAAAACTAATT TGAA AGTTAGTTTTGTAACGGCTC ATTTTTTTGCTTTTT TERM 1050 754765 - 754753 - f 77 -3.5 -5.72616 | overlap 754762 754764 AGTTATATAAAAAAA TATAT TAA ATATA ATGTAATTACATCAA CLL_A0749 754961 - 756205 + | helix-turn-helix domain protein TERM 1051 757042 - 757024 - g 78 -6 -4.87389 | opp_overlap 757020 GACTTTAAAAATAAA GCTTTTGA ATA TCAAAGGC ATAATCCTATAACTT TERM 1052 757375 - 757385 + G 70 -5.4 -4.48299 | opp_overlap 757371 757367 757365, overlap 757371 AAATATATGAACATA GCAT TAG ATGC TTTGTTTAAATCTGG CLL_A0750 756256 - 757521 + | tetratricopeptide repeat protein TERM 1053 757651 - 757596 - f 100 -9.4 -5.22943 | opp_overlap 757607 ATTAAATTTAAAAAA GTATGTATTTATAACATGTTTATG TCAACTAG CATAAACATGTTATTTTTACATAC ATAATAATTTTGATA TERM 1054 757607 - 757640 + F 100 -10.6 -4.67353 | opp_overlap 757596 AAAAGTATGTATTTA TAACATGTTTATGT CAACTA GCATAAACATGTTA TTTTTACATACATAA CLL_A0751 757735 - 758268 + | hypothetical protein TERM 1055 758290 - 758318 + F 100 -7.7 -5.93252 | opp_overlap 758290 AATGTCATTAAAAAA GTTCTATTAAA AACTCAG TTTAATAGAAC TTTTTTATTTTTAAA TERM 1056 758318 - 758290 - f 93 -7.7 -5.16237 | opp_overlap 758290 AATGTCATTAAAAAA GTTCTATTAAA AACTCAG TTTAATAGAAC TTTTTTATTTTTAAA clpB 758420 - 761026 + | ATP-dependent chaperone ClpB TERM 1057 761038 - 761066 + T 100 -12.7 -3.8377 | opp_overlap 761028 761042, overlap 761042 TTAAATCTTATTTAT TAAAGAGACTATT TAA AATAGTCTCTTTG TTTAATATAAAAGTT TERM 1058 761042 - 761062 + T 100 -11.3 -4.53602 | opp_overlap 761028 761042, overlap 761038 ATCTTATTTATTAAA GAGACTATT TAA AATAGTCTC TTTGTTTAATATAAA TERM 1059 761062 - 761042 - T 95 -11.3 -3.76402 | opp_overlap 761042 761038, overlap 761028 ATCTTATTTATTAAA GAGACTATT TAA AATAGTCTC TTTGTTTAATATAAA TERM 1060 761238 - 761251 + T 73 -5.3 -4.8269 | overlap 761239 GAGAATTTGTTTTAT CTGAA AAAT TTCAG TTTTTCATAATTCTA CLL_A0753 761527 - 761345 - | hypothetical protein TERM 1061 761693 - 761673 - R 76 -6.3 -4.77719 | overlap 761668 761675 TAAAATCCAATAAAA TACATTTTA AAA TAAAATGCA ATAATAATGTTAAAT CLL_A0754 762677 - 761709 - | peptidase, T4 family CLL_A0755 763435 - 762839 - | membrane protein TERM 1062 763394 - 763408 + g 70 -2.9 -5.29885 | ACCTACCATAGCCAT TTTTC TAGTT GAAAA TTTTGTTTTTACATT CLL_A0756 763839 - 764705 + | PP-loop family protein TERM 1063 764711 - 764732 + F 72 -5.9 -4.53602 | opp_overlap 764709 764711 CGAAGAGTAAATAGA GGTTGTC TTAATTTT GACAACC TTTCTTTAATATAAA CLL_A0757 764842 - 765036 + | hypothetical protein CLL_A0758 765227 - 766981 + | diguanylate cyclase/phosphodiesterase domain 2 TERM 1064 767279 - 767252 - f 82 -11.4 -2.53747 | opp_overlap 767242 767252, overlap 767251 767249 CAACGCGGATAATAT CCGTCCTATATA TTTA TATATAGGGCGG TTTTTTTGTTTATAA TERM 1065 767252 - 767279 + F 100 -13.6 -6.02919 | opp_overlap 767252 767251 767249, overlap 767242 CAACGCGGATAATAT CCGTCCTATATA TTTA TATATAGGGCGG TTTTTTTGTTTATAA CLL_A0759 767464 - 767982 + | putative tryptophan transport protein TERM 1066 768035 - 768002 - T 100 -9.9 -6.08342 | opp_overlap 768002 TAATAAATAAAAAAA CATCTATATTATTGA GTTT TTAATAATATAGATG TTTTTTTATTTTTGA TERM 1067 768002 - 768035 + T 100 -12.1 -6.20267 | opp_overlap 768002 TAATAAATAAAAAAA CATCTATATTATTGA GTTT TTAATAATATAGATG TTTTTTTATTTTTGA CLL_A0760 768788 - 768072 - | polysaccharide deacetylase family protein TERM 1068 769009 - 768968 - H 89 -9.9 -3.48924 | gap 1, opp_overlap 768968 CTACTTGTTAGATAA GACTATTTATAGAAAGGAAA GGT TTTCATTT-TATAAATAGTC TTTTAAGATAAATAT TERM 1069 768968 - 769009 + H 95 -10.5 -4.15006 | opp_overlap 768968 CTACTTGTTAGATAA GACTATTTATAGAAAGGAA AGGT TTTCATTTTATAAATAGTC TTTTAAGATAAATAT TERM 1070 769238 - 769224 - g 71 -4.4 -4.89477 | opp_overlap 769224, overlap 769219 TGCTTAATAATAAAA TATATA GTT TATATA TTTTTCAAGATAATG TERM 1071 770903 - 770893 - g 78 -2.6 -5.92399 | TAATAAAAGAAAAAA TATA TAT TATA AATTAAAGAAAGATA TERM 1072 772032 - 772022 - g 74 -4 -5.3104 | opp_overlap 772022 CTAGGAAAAATAAAA TTAG CAT CTAA TTACTATGAGTTAAT CLL_A0761 769127 - 774394 + | ggdef domain protein CLL_A0762 774526 - 775173 + | hypothetical protein TERM 1073 775190 - 775217 + F 100 -9.4 -4.96106 | gap 1, opp_overlap 775190 TTCTATATTTCAAAA GATTGATAAGCGT TTT AC-CTTATCAATC TTTTTGCTATTTATA TERM 1074 775217 - 775190 - f 86 -9.4 -4.16943 | gap 1, opp_overlap 775190 TTCTATATTTCAAAA GATTGATAAGCGT TTT AC-CTTATCAATC TTTTTGCTATTTATA dut 775314 - 775754 + | deoxyuridine 5'-triphosphate nucleotidohydrolase TERM 1075 775798 - 775850 + T 100 -9.5 -5.10208 | opp_overlap 775803, overlap 775803 AGGTCTATTAGAATA AAAAACCTTCTTTGAAATAATTCAT AGA ATAAATTGTTTCAAAGGAGGTTTGA TTTTTATTAACCTTA TERM 1076 775803 - 775845 + T 100 -13.8 -4.43037 | opp_overlap 775803, overlap 775798 TATTAGAATAAAAAA CCTTCTTTGAAATAATTCAT AGA ATAAATTGTTTCAAAGGAGG TTTGATTTTTATTAA TERM 1077 775845 - 775803 - T 100 -11.6 -5.58179 | opp_overlap 775803 775798 TATTAGAATAAAAAA CCTTCTTTGAAATAATTCAT AGA ATAAATTGTTTCAAAGGAGG TTTGATTTTTATTAA TERM 1078 775909 - 775925 + T 81 -5.3 -5.33405 | opp_overlap 775909 775907 TACAAAATTAAACTA TTAAAAT GTA ATTTTAA TTTTTGTTTAATAGA CLL_A0764 777919 - 775994 - | ABC transporter, ATP-binding protein TERM 1079 776164 - 776176 + g 79 -4.9 -5.40279 | CATTTTTATTTATAG TATCT TCA AGATA TTTTATTTTATTTTG CLL_A0765 778027 - 778641 + | transcriptional regulator, TetR family TERM 1080 778650 - 778681 + T 100 -14 -3.45832 | opp_overlap 778650 GGTTTAAAATTAAAA TGCCTATCTTAATG CATG TATTAAGATAGGCA TTACTTATAGGATTA TERM 1081 778681 - 778650 - T 100 -13.3 -4.67038 | opp_overlap 778650 GGTTTAAAATTAAAA TGCCTATCTTAAT GCATGT ATTAAGATAGGCA TTACTTATAGGATTA CLL_A0766 779314 - 778694 - | hypothetical protein TERM 1082 778983 - 779017 + g 80 -10.2 -2.95116 | opp_overlap 778982 778985 778988, overlap 778979 778985 ATAAATCTTACATAT GATAATAGTGGATTAG CTT CTAGTTCACTATCATC TAGTTTAAATAGTGC CLL_A0767 779855 - 779325 - | hypothetical protein CLL_A0768 780024 - 781331 + | aminotransferase, class V TERM 1083 781408 - 781446 + T 82 -11.4 -2.53382 | opp_overlap 781414, overlap 781414 TATTAGATTTTTATA GTAAAAGAGTTATTAG TTTTAGT TTAATAACTCTTTTAC TCAGTTAAACATAAT CLL_A0769 782678 - 781461 - | phosphofructokinase family protein TERM 1084 781496 - 781516 + g 70 -6.3 -4.22314 | opp_overlap 781510, overlap 781493 ATTGTGGTAAATTAT TTTCTAATT TTA AATTAGGAA TATTTTTTACTAATG CLL_A0770 782896 - 783447 + | integral membrane protein CLL_A0771 783510 - 783923 + | transcriptional regulator, Fur family TERM 1085 784076 - 784128 + T 100 -10.4 -5.03715 | gap 1, opp_overlap 784083 784084, overlap 784084 784089 784126 ATTATATCAATAAAG TAAAAAAGCAAAATGTGCTAAATAA ATTT TTATTTAGCACATTTTG-TTATGTA TTTTTTACAAATACT TERM 1086 784122 - 784083 - T 100 -15.4 -5.46129 | opp_overlap 784076 784084 784089, overlap 784084 CAATAAAGTAAAAAA GCAAAATGTGCTAAATAA ATTT TTATTTAGCACATTTTGT TATGTATTTTTTACA TERM 1087 784121 - 784084 - T 100 -18.9 -3.85237 | opp_overlap 784076 784084 784089, overlap 784083 AATAAAGTAAAAAAG CAAAATGTGCTAAATAA ATTT TTATTTAGCACATTTTG TTATGTATTTTTTAC TERM 1088 784084 - 784121 + T 100 -18.9 -3.94368 | opp_overlap 784084 784083, overlap 784076 784089 AATAAAGTAAAAAAG CAAAATGTGCTAAATAA ATTT TTATTTAGCACATTTTG TTATGTATTTTTTAC TERM 1089 784089 - 784116 + T 100 -13 -4.91357 | opp_overlap 784084 784083, overlap 784084 784076 AGTAAAAAAGCAAAA TGTGCTAAATAA ATTT TTATTTAGCACA TTTTGTTATGTATTT CLL_A0772 785026 - 784232 - | high-affinity Zinc uptake system membrane protein ZnuB CLL_A0773 785733 - 785059 - | zinc import ATP-binding protein ZnuC TERM 1090 785212 - 785231 + g 79 -6.6 -4.7254 | AGATATAATTGTTTT GTTTAAAT CTTC ATTTAAAC TTTTTAATAAAGGAT TERM 1091 785268 - 785285 + g 70 -8.5 -2.59154 | overlap 785267 785282 CATTCTGACTTTTTT CATCAAC CCCA GTTGATG GTTCATCTAATATTA TERM 1092 785798 - 785756 - R 100 -16.8 -4.59853 | opp_overlap 785756 785759 TCAACTCCTTAAAAA TAATATATTTAGGCATTATA TTA TATAACGCCTAAACATATTA TATACTTAGTTGCAA TERM 1093 785756 - 785798 + r 90 -12.4 -2.96899 | opp_overlap 785756, overlap 785759 TCAACTCCTTAAAAA TAATATATTTAGGCATTATA TTA TATAACGCCTAAACATATTA TATACTTAGTTGCAA TERM 1094 785759 - 785795 + r 83 -9.7 -3.62476 | opp_overlap 785756, overlap 785756 ACTCCTTAAAAATAA TATATTTAGGCATTATA TTA TATAACGCCTAAACATA TTATATACTTAGTTG TERM 1095 785805 - 785827 + r 95 -12.2 -3.31931 | opp_overlap 785803 AACATATTATATACT TAGTTGCAAA TTG TTTGCAACTA TTACTAATTATATAC CLL_A0774 786253 - 785831 - | hypothetical protein TERM 1096 786202 - 786212 + g 87 -2.6 -6.17292 | opp_overlap 786202, overlap 786189 TATATTGATTTAAAT TAAT AGT ATTA TTTTTTTTTACATTT CLL_A0775 786660 - 787058 + | hypothetical protein TERM 1097 787906 - 787889 - g 71 -7.1 -3.78234 | ACTTAAACCTAATAA TATACCT TTAG AGGTATA TAAAAATGCTGTGAC TERM 1098 788439 - 788423 - g 74 -2.3 -5.71295 | overlap 788424 788425 AGATAAAAATAAAAA GCTTTAT TTA ATAAATC AAGAATTGGAACAAA pepF 787104 - 788888 + | oligoendopeptidase F TERM 1099 788991 - 788948 - f 75 -7.8 -3.94086 | gap 1, opp_overlap 788958 788982 788983, overlap 788946 788958 788983 TAAGAAATGAAAATA TATTATATAATGCTGTCTTAA TTT TTAAGACAGCATT-TGTATTA CTTATGTAATACAAA TERM 1100 788958 - 788982 + F 100 -14.5 -4.29327 | opp_overlap 788958 788948 788946 AAATATATTATATAA TGCTGTCTTAA TTT TTAAGACAGCA TTTGTATTACTTATG TERM 1101 788982 - 788958 - f 100 -14.5 -3.60782 | opp_overlap 788958, overlap 788948 788946 AAATATATTATATAA TGCTGTCTTAA TTT TTAAGACAGCA TTTGTATTACTTATG TERM 1102 788983 - 789006 + F 79 -9.8 -2.5937 | opp_overlap 788948 788946 788983, overlap 788982 ATTTTTAAGACAGCA TTTGTATTAC TTAT GTAATACAAA ATTATAGAAATATAT TERM 1103 789006 - 788983 - f 79 -9.8 -2.75528 | opp_overlap 788982 788983, overlap 788948 788946 ATTTTTAAGACAGCA TTTGTATTAC TTAT GTAATACAAA ATTATAGAAATATAT CLL_A0777 789172 - 790137 + | rhomboid family protein TERM 1104 790452 - 790466 + G 80 -5.8 -5.06414 | TTTTTAGAGTTTTAT TAGTTA TAG TAACTA TTTTTATTGCGAAAC CLL_A0778 790334 - 790945 + | hypothetical protein gluD 791119 - 792471 + | glutamate dehydrogenase, NAD-specific TERM 1105 792500 - 792548 + F 82 -8.8 -4.12532 | gap 2, opp_overlap 792507, overlap 792507 TAAAGTGGTTATTAA TTTATAAGAGTTAACTTTAATTTT TAA AAAATTAA-GTTAGCTCTT-TAAA TTTATATATAAAAGC TERM 1106 792507 - 792542 + F 86 -9.4 -3.92005 | gap 1, opp_overlap 792507, overlap 792500 GTTATTAATTTATAA GAGTTAACTTTAATTTT TAA AAAATTAA-GTTAGCTC TTTAAATTTATATAT TERM 1107 792784 - 792756 - f 78 -7.7 -4.3078 | AATTACATTAATAAA TATCTTTATATAT GGA AAATATAAAGATA TAGAATTAAAGAGTA TERM 1108 793025 - 793002 - f 82 -8.3 -4.38141 | overlap 792999 GTGTAGATAAAATAA TAAGTGAAG AATTAG CTTCACTTA ACATTAGGAGTGAAT CLL_A0780 793044 - 794468 + | glycosyl transferase, group 2 family protein CLL_A0781 794882 - 796831 + | DNA gyrase subunit B CLL_A0782 796852 - 799761 + | DNA gyrase subunit A TERM 1109 800152 - 800132 - g 70 -6.9 -4.03815 | overlap 800123 ATGAAAGAAATATAA CTTCATATC CTG GATTTGAAG ATGAACTTATAAATT CLL_A0783 799780 - 800316 + | protein ThiJ TERM 1110 801111 - 801101 - g 74 -4 -5.21709 | TTTTATATGAAAAAA TGAA AAT TTCA AAGGAAGAACTTTAT recJ 800443 - 802209 + | single-stranded-DNA-specific exonuclease RecJ TERM 1111 802319 - 802286 - T 100 -18.5 -5.14563 | opp_overlap 802286 TTTGCGATTAAAAAA GGGATAATTAGAAAC CTAT GTTTCTAATTATCCC TTTTTATAATAAAAC TERM 1112 802286 - 802319 + T 100 -18.5 -4.91109 | opp_overlap 802286 TTTGCGATTAAAAAA GGGATAATTAGAAAC CTAT GTTTCTAATTATCCC TTTTTATAATAAAAC CLL_A0785 802522 - 802334 - | hypothetical protein CLL_A0786 803847 - 802552 - | 4-hydroxybutyrate coenzyme A transferase TERM 1113 804319 - 804266 - R 100 -21 -3.33798 | opp_overlap 804271 804276, overlap 804268 804271 804276 ATTTTTATAAACATA CATAATAAAAGGTGTATTGAAATA TTAAAT TATTTCAATACACCTTTTATTATA GGAGTGCTAAATAGT TERM 1114 804317 - 804268 - R 100 -21.4 -3.23335 | opp_overlap 804271 804276, overlap 804266 804271 804276 TTTTATAAACATACA TAATAAAAGGTGTATTGAAATA TTAAAT TATTTCAATACACCTTTTATTA TAGGAGTGCTAAATA TERM 1115 804271 - 804314 + r 100 -18.7 -3.31792 | opp_overlap 804268 804266 804271 804276, overlap 804276 TATAAACATACATAA TAAAAGGTGTATTGAAATA TTAAAT TATTTCAATACACCTTTTA TTATAGGAGTGCTAA TERM 1116 804314 - 804271 - R 100 -18.7 -3.74615 | opp_overlap 804271 804276, overlap 804268 804266 804276 TATAAACATACATAA TAAAAGGTGTATTGAAATA TTAAAT TATTTCAATACACCTTTTA TTATAGGAGTGCTAA TERM 1117 804276 - 804309 + r 100 -14.2 -4.77567 | opp_overlap 804276 804271 804268 804266, overlap 804271 ACATACATAATAAAA GGTGTATTGAAATA TTAAAT TATTTCAATACACC TTTTATTATAGGAGT TERM 1118 804309 - 804276 - R 100 -14.2 -4.88495 | opp_overlap 804271 804276, overlap 804271 804268 804266 ACATACATAATAAAA GGTGTATTGAAATA TTAAAT TATTTCAATACACC TTTTATTATAGGAGT CLL_A0787 804531 - 804334 - | hypothetical protein TERM 1119 805810 - 805822 + G 70 -4.9 -4.66833 | opp_overlap 805810, overlap 805806 TAGAGCAGGGGCAAA TTCAA TAT TTGAA TTTTTAGCATTAAGA murG 805016 - 806089 + | undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase CLL_A0789 806280 - 806705 + | flavodoxin TERM 1120 806719 - 806737 + F 81 -7.5 -4.50976 | opp_overlap 806719 AATATTGTTTATGAA GTAAGTC ATCAA GACTTAC TTTTATAATATAACA TERM 1121 808684 - 808667 - g 70 -8.5 -2.73243 | opp_overlap 808670, overlap 808666 808671 ATCTATCGTTGAAAT CAAGCTT CCAG AAGCTTG GAAGACTGTTAAAGA TERM 1122 808994 - 808973 - g 76 -7.3 -4.38322 | overlap 808962 TGAAGCAGAAAAGAA TGCTGCACC TGCT GATGCAACA ATAGTTGATGCTAAA TERM 1123 809416 - 809406 - g 74 -6.8 -4.34486 | opp_overlap 809413, overlap 809403 ACTAAGAATAAAGAA GGAC ATG GTCC AGCTTGGGCTAATTC TERM 1124 809644 - 809634 - g 75 -5.4 -4.82901 | GCTGCTTTAGAAAAA TCTG GTA CAGA AGCTGCTAAAGAAAT nifJ 806829 - 810329 + | pyruvate:ferredoxin (flavodoxin) oxidoreductase TERM 1125 810350 - 810371 + F 100 -10.9 -5.18355 | opp_overlap 810348 810346 810350 TATTCATTAAATAGA GGATGGCCA GAAA TGGTCATCC TTTTTAGTTTTTAAA TERM 1126 810371 - 810350 - f 77 -8.7 -3.30418 | opp_overlap 810350, overlap 810348 810346 TATTCATTAAATAGA GGATGGCCA GAAA TGGTCATCC TTTTTAGTTTTTAAA TERM 1127 810462 - 810438 - f 75 -8.1 -3.62418 | opp_overlap 810438 810437 810440 ATAAGGCATTTGAAA CATAAAAAATA ATA TACTTTTTATG CTTAATTTTACATAT CLL_A0791 810660 - 811019 + | hypothetical protein TERM 1128 811191 - 811218 + F 100 -13 -4.78848 | opp_overlap 811195, overlap 811175 CCTATAATATTTTTA TAGACTTTAGTA ATTT TACTAAAGTCTA TTTTATATTTAGGAA TERM 1129 811805 - 811821 + G 77 -9.5 -2.83519 | overlap 811798 ACAATATCTACAGGT GCTAAAC AAT GTTTAGC TAATGTATTTATGGC CLL_A0792 811511 - 812704 + | aspartate aminotransferase TERM 1130 812734 - 812755 + F 77 -5.1 -5.40072 | opp_overlap 812734 AGTAATATTAAAAAA CCTCTTGTT AAAA AACATGGGG TTTTTTTGAAGAAAA CLL_A0793 812926 - 813564 + | HAD-superfamily subfamily IB hydrolase CLL_A0794 813593 - 814396 + | enzyme of ilve/pabc family TERM 1131 814606 - 814585 - g 95 -7.5 -5.41143 | overlap 814569 TATTGCTCAAAAAAA TACTTTTTT TAAG AAAAAAGTA AAAATAGAAATTTCT TERM 1132 814622 - 814611 - g 70 -3 -5.27769 | AGAAAAAAGTAAAAA TAGA AATT TCTA GAGTGAATGAAACGA TERM 1133 815960 - 815940 - g 82 -2.6 -5.9873 | TCATTAGAAAAAAAA TTATGGGA TTAGG TCCTATAA AAATAAAAAAATATT CLL_A0795 814475 - 816421 + | hypothetical protein CLL_A0796 816436 - 816885 + | chemotaxis protein CheW CLL_A0797 816894 - 817382 + | chemoreceptor glutamine deamidase CheD TERM 1134 818012 - 818035 + G 93 -11.2 -3.30771 | opp_overlap 818005 818016, overlap 818005 818016 TAACTAAATTTGAAG CAAATATTGG AGTA CCAATATTTG TTGTGCAACATATGC TERM 1135 818016 - 818031 + G 72 -6.2 -4.30987 | opp_overlap 818016, overlap 818012 TAAATTTGAAGCAAA TATTGG AGTA CCAATA TTTGTTGTGCAACAT TERM 1136 818104 - 818088 - g 70 -6.7 -4.00532 | overlap 818091 TTCTGAAAGATTAAA TAAGATT TGT AATCTTA AAGTTTTAGAGGGTG CLL_A0798 817369 - 818502 + | chemotaxis response regulator protein-glutamate methylesterase cheR 818512 - 819279 + | CheR methyltransferase, SAM binding domain CLL_A0800 819291 - 821324 + | chemotaxis protein CheA CLL_A0801 821348 - 821947 + | CheY-P phosphatase CheC TERM 1137 822190 - 822172 - g 72 -6 -4.57304 | overlap 822173 AGTTAAGCAAATAAA GGCATTTG ATC CAAATGCA AAAATAATAATGTGT TERM 1138 822189 - 822173 - g 82 -9.5 -3.33298 | overlap 822172 GTTAAGCAAATAAAG GCATTTG ATC CAAATGC AAAAATAATAATGTG CLL_A0802 821966 - 822325 + | sporulation initiation phosphotransferase F CLL_A0803 822350 - 822745 + | chemotaxis signal transduction protein CheW TERM 1139 823027 - 823017 - g 70 -5.4 -4.47679 | AAGTCAAAATAGAAA CTGT AGA ACAG ATAACCTATGAGGAA TERM 1140 823349 - 823335 - g 75 -7.2 -4.22748 | CAGCAATAAATCAAA CATTAG CGC CTAATG AACCGGTGGCACTTA fliM 822767 - 823762 + | flagellar motor switch protein FliM CLL_A0805 823755 - 824912 + | flagellar motor switch protein FliN CLL_A0806 825271 - 825549 + | negative regulator of flagellin synthesis CLL_A0807 825553 - 825963 + | hypothetical protein flgK 826207 - 828021 + | flagellar hook-associated protein FlgK flgL 828191 - 829399 + | flagellar hook-associated protein 3 CLL_A0810 829417 - 829842 + | flagellar assembly factor FliW csrA 829847 - 830062 + | carbon storage regulator CLL_A0812 830247 - 830603 + | flaG family protein CLL_A0813 830625 - 830921 + | hypothetical protein fliS 830933 - 831310 + | flagellar protein FliS CLL_A0815 831331 - 833418 + | flagellar cap protein FliD CLL_A0816 833422 - 833748 + | hypothetical protein TERM 1141 833758 - 833810 + F 75 -6.7 -4.38927 | opp_overlap 833761, overlap 833761 GTTTAGATATAAGAT TAATGTATTGAAATTAAATTTAATT AAT AGAAAAATTTGATTTCAATACATTC TTTATTATATGAGAA TERM 1142 833761 - 833807 + F 80 -8.4 -4.30793 | opp_overlap 833761, overlap 833758 TAGATATAAGATTAA TGTATTGAAATTAAATTTAATT AAT AGAAAAATTTGATTTCAATACA TTCTTTATTATATGA CLL_A0817 833857 - 834036 + | hypothetical protein CLL_A0818 834452 - 835264 + | flagellin TERM 1143 835290 - 835313 + F 85 -6 -5.47159 | AACTAAAATTTTTAA GAGTCATGGT GAAA ACTGTGGCTC TTTTTTCTATTGAAA CLL_A0819 835410 - 837314 + | glycosyl transferase, family 2 CLL_A0820 837525 - 838337 + | flagellin TERM 1144 838363 - 838386 + F 95 -8.2 -5.18643 | AACTAAAATTTTTAA GAGTCATGGT GAGA ACTATGGCTC TTTTATTTTAATTAA TERM 1145 839826 - 839807 - g 74 -8 -3.61589 | opp_overlap 839807, overlap 839796 839803 CTAATATTAAAGGAA CTTTAGTA AAGT TACTAAAG GATTCCATTGAAGAA TERM 1146 839963 - 839947 - g 72 -6.7 -4.19276 | GTAAAACTCTTAAAA TCTATTA AAA TAATAGA GCAAGTATGTAAAGA CLL_A0821 838501 - 840300 + | hypothetical protein CLL_A0822 840328 - 840675 + | hypothetical protein CLL_A0823 840746 - 841954 + | hypothetical protein CLL_A0824 842046 - 842993 + | domain of unknown function family CLL_A0825 842990 - 843655 + | putative hydrolase CLL_A0826 843699 - 844541 + | putative O-methyltransferase CLL_A0827 844615 - 845397 + | spore coat polysaccharide biosynthesis protein F TERM 1147 845834 - 845822 - g 75 -3.5 -5.48623 | opp_overlap 845822, overlap 845824 AAACATAAATAAAAA TATAA AAA TTATA GATTTTTATGAGGTA CLL_A0828 845451 - 847202 + | sulfatase domain protein TERM 1148 847930 - 847948 + G 72 -6.8 -4.07568 | AGGTGTTTATTACGA TTTACCTA TGG TAGGTGAA TTTTGCAAAGAAGAA CLL_A0829 847490 - 848575 + | putative aspartate aminotransferase TERM 1149 849318 - 849294 - g 70 -8.7 -2.71979 | opp_overlap 849301, overlap 849301 TAATATAGAAGTAAT TAAAGAAGAAG TTG CTACTTCTTTA GAATAACTAGAAAAT CLL_A0830 848572 - 849324 + | putative nucleotidyl transferase CLL_A0831 849538 - 850521 + | glycosyltransferase CLL_A0832 850583 - 851638 + | sialic acid synthase TERM 1150 852439 - 852421 - g 70 -7.6 -3.45433 | AGCTGAAAAAGCTAA TATATCTT TAG AAGATATA GATATACAAACTATA CLL_A0833 851672 - 852688 + | polysaccharide biosynthesis protein TERM 1151 853275 - 853259 - g 80 -5.9 -5.10208 | CAATGTGAAGAAAAA CTATGCA AAA TACATAG AGATTTAGGTGAAGA TERM 1152 854155 - 854128 - g 71 -7.2 -3.78934 | opp_overlap 854127 TGTGCTTCATAATAA TGCATTTATAAA ATCT TTTATAGATGCA CTTAATGAAAATAAT CLL_A0834 852995 - 854212 + | putative FliB family protein CLL_A0835 854248 - 855252 + | NAD-dependent epimerase/dehydratase family protein CLL_A0836 855555 - 856409 + | flagellin TERM 1153 856694 - 856704 + F 75 -4 -5.54338 | overlap 856685 856688 GCCAGTTGCCGAAGG GTAT AAT ATAC TTTTTGTTTTAATTA TERM 1154 856787 - 856804 + F 90 -6.3 -5.95539 | opp_overlap 856787 AATTTCATCATGTAA CTACTCT TTAG GGAGTAG TTTTTTTATTTGAGA TERM 1155 856876 - 856853 - f 73 -3.4 -5.48787 | gap 1, opp_overlap 856853 ACAATAGATAAAAAA TCTTTATATTA TAT TAA-ATAAAGA TATATACGACAAAAA flgB 857209 - 857610 + | flagellar basal-body rod protein FlgB flgC 857625 - 858032 + | flagellar basal-body rod protein FlgC fliE 858046 - 858372 + | flagellar hook-basal body complex protein fliF 858397 - 859959 + | flagellar M-ring protein FliF TERM 1156 860329 - 860314 - g 78 -7.6 -4.38712 | opp_overlap 860314 GCTATTGCTAGAAAA GCTGAT GCAC ATCAGC TTTTAAATGCAATAA TERM 1157 860314 - 860329 + G 77 -7.6 -4.1899 | opp_overlap 860314 GCTATTGCTAGAAAA GCTGAT GCAC ATCAGC TTTTAAATGCAATAA fliG 859966 - 860982 + | flagellar motor switch protein FliG CLL_A0842 860966 - 861739 + | flagellar assembly protein fliI 861757 - 863064 + | flagellar protein export ATPase FliI fliJ 863099 - 863542 + | flagellar export protein FliJ TERM 1158 864502 - 864486 - g 71 -4.5 -4.90136 | overlap 864491 AACTAACAGTAAAAA TAAATCC AAA AGATTTA GGTCAAGTTACTATT CLL_A0845 863549 - 864832 + | putative flagellar hook-length control protein TERM 1159 865409 - 865396 - g 71 -2.4 -5.42265 | opp_overlap 865396 TTAAAGGATAAAAAA GTAG TTATTT CTAC TTATGATAAAGATGG CLL_A0846 864844 - 865809 + | flagellar hook assembly protein FlgD CLL_A0847 865813 - 866202 + | flagellar operon protein TERM 1160 867143 - 867156 + G 72 -6.7 -4.11216 | ACAGCTCTTGGTCAA GTAGC TATG GCTAC TTTTAAAAATCCAGA TERM 1161 867251 - 867240 - g 70 -2.2 -5.42164 | CAGAAATAATAAAAA CTCC AGTA GGAA AGCTAGCAACTGACT CLL_A0848 866345 - 867445 + | flagellar hook protein FlgE TERM 1162 867523 - 867503 - f 72 -8.5 -3.16668 | opp_overlap 867500 867503 867508, overlap 867508 TAATAGCTTTATTAA TAAAAGTTA TTA TAACTTTTA TATGCTATACGATTA TERM 1163 868261 - 868239 - g 74 -4.1 -5.252 | overlap 868240 GATGCTGATAAAAAA CCTACAGCA GTTGG TGCAGTAGA TGGAAAAAGTGGTGG CLL_A0849 867642 - 868736 + | flagellar hook protein FlgE TERM 1164 868739 - 868787 + F 100 -16.5 -2.63301 | opp_overlap 868742, overlap 868750 ATTGATGAGATAAGA TAATTTAATAATTAGGGAGAAAA GTA TTTTCTCCCTAATTATTAAAAAA TAATATGAGAGTATA TERM 1165 868784 - 868742 - f 100 -22.6 -3.80945 | opp_overlap 868739 868750 GATGAGATAAGATAA TTTAATAATTAGGGAGAAAA GTA TTTTCTCCCTAATTATTAAA AAATAATATGAGAGT TERM 1166 868750 - 868776 + F 100 -15.4 -3.62775 | opp_overlap 868742, overlap 868739 AAGATAATTTAATAA TTAGGGAGAAAA GTA TTTTCTCCCTAA TTATTAAAAAATAAT TERM 1167 868876 - 868860 - g 76 -6.7 -4.51994 | opp_overlap 868856, overlap 868856 GGAATGAATAATAAA TCATTTA TAT TAAATGA TGATCATATTGAAAA CLL_A0850 868830 - 869021 + | hypothetical protein CLL_A0851 869037 - 869852 + | chemotaxis protein MotA CLL_A0852 869855 - 870598 + | chemotaxis protein MotB fliL 870604 - 871083 + | flagellar basal body-associated protein FliL CLL_A0854 871164 - 871484 + | putative flagellar protein fliP 871487 - 872266 + | flagellar biosynthetic protein FliP fliQ 872278 - 872547 + | flagellar biosynthetic protein FliQ TERM 1168 872608 - 872623 + G 74 -4.8 -5.00467 | TATTTTTTATATTTT TAAGAT TAAC ATCTTA TTTTGTTATTGTTAA CLL_A0857 872565 - 874406 + | flagellar biosynthetic protein TERM 1169 875862 - 875843 - g 72 -5 -4.90525 | GAAGCTGAAATAAAA GGATTTAC AGTA GTAGATCC AACGACAGTTATGGT flhA 874436 - 876502 + | flagellar biosynthesis protein FlhA TERM 1170 876802 - 876791 - g 70 -2.2 -5.38348 | AAAAAGATGAAAAAA CAAC AAGA GCTG CTTTAAATTTAACTA flhF 876502 - 877713 + | flagellar biosynthetic protein FlhF CLL_A0860 877707 - 878567 + | ATPases involved in chromosome partitioning, MinD family CLL_A0861 878578 - 879213 + | flagellar protein CLL_A0862 879316 - 880044 + | RNA polymerase sigma-D factor CLL_A0863 880057 - 880584 + | hypothetical protein CLL_A0864 880662 - 880787 + | hypothetical protein CLL_A0865 880784 - 881557 + | flagellar hook-basal body complex protein CLL_A0866 881571 - 882341 + | flagellar hook-basal body complex protein FlhP TERM 1171 882494 - 882440 - T 100 -14.3 -3.64488 | gap 1, opp_overlap 882455, overlap 882442 882455 AACTTTGCTAAAACA TAGCCAAATAAAAAATAGTATCTCAA AAAT TTGAGATACTATTTTTTATTTAA-TA ATTATTTTGCTAATA TERM 1172 882493 - 882442 - T 100 -15 -3.39908 | opp_overlap 882455, overlap 882440 882455 CTTTGCTAAAACATA GCCAAATAAAAAATAGTATCTCAA AAAT TTGAGATACTATTTTTTATTTAAT AATTATTTTGCTAAT TERM 1173 882480 - 882455 - T 100 -12.1 -5.65927 | opp_overlap 882455, overlap 882442 882440 TAGCCAAATAAAAAA TAGTATCTCAA AAAT TTGAGATACTA TTTTTTATTTAATAA TERM 1174 882455 - 882480 + T 100 -12.1 -5.68438 | opp_overlap 882455 882442 882440 TAGCCAAATAAAAAA TAGTATCTCAA AAAT TTGAGATACTA TTTTTTATTTAATAA CLL_A0867 884136 - 882496 - | putative manganese-dependent inorganic pyrophosphatase TERM 1175 885834 - 885818 - g 78 -9.5 -3.14284 | opp_overlap 885807, overlap 885817 CTTGCAGGAATAAAG CCTGTTA TGA TAACAGG AGATCATAAAAATAC CLL_A0868 884282 - 886828 + | putative calcium-translocating P-type ATPase, PMCA-type TERM 1176 886860 - 886897 + T 100 -15.9 -3.89614 | opp_overlap 886861 886866, overlap 886861 886866 TGTTCAAATATAACA ACAAAAGTACCAATTGA GATT TCAATTGGTACTTTTGA TTTAATCTGTAAATT TERM 1177 886861 - 886896 + T 100 -19.4 -2.93045 | opp_overlap 886861 886866, overlap 886860 886866 GTTCAAATATAACAA CAAAAGTACCAATTGA GATT TCAATTGGTACTTTTG ATTTAATCTGTAAAT TERM 1178 886896 - 886861 - T 100 -19.4 -4.03586 | opp_overlap 886860 886861 886866, overlap 886866 GTTCAAATATAACAA CAAAAGTACCAATTGA GATT TCAATTGGTACTTTTG ATTTAATCTGTAAAT TERM 1179 886891 - 886866 - T 100 -13.5 -4.99312 | opp_overlap 886861 886860 886866, overlap 886861 AATATAACAACAAAA GTACCAATTGA GATT TCAATTGGTAC TTTTGATTTAATCTG TERM 1180 886866 - 886891 + T 100 -13.5 -4.6038 | opp_overlap 886866 886861, overlap 886861 886860 AATATAACAACAAAA GTACCAATTGA GATT TCAATTGGTAC TTTTGATTTAATCTG CLL_A0869 887342 - 886911 - | hypothetical protein TERM 1181 887958 - 887944 - g 74 -2.2 -5.66926 | TTAAAAAAAATAAAA TTATTT CAA AAACAA TCTAATAATTTTATG CLL_A0870 887914 - 888459 + | BotR CLL_A0871 888452 - 888673 + | UviB homologous protein TERM 1182 888931 - 888903 - g 71 -8.4 -2.8241 | opp_overlap 888905, overlap 888902 888905 ACTACAGTGAATAAC TATCTTAATGCT AAAGA AACATTAAGATA TGATGGAGATTATAT TERM 1183 889546 - 889526 - g 76 -4.1 -5.44721 | opp_overlap 889526 889545, overlap 889541 889545 AGCATTGGAAAAAAA TGATTAC AAGATAA GTAATCA TTTTTTAAATGTATT TERM 1184 889526 - 889546 + G 71 -4.1 -5.15381 | opp_overlap 889526 889541 889545, overlap 889545 AGCATTGGAAAAAAA TGATTAC AAGATAA GTAATCA TTTTTTAAATGTATT CLL_A0872 888894 - 889817 + | hypothetical protein CLL_A0873 889996 - 892305 + | ATP-dependent protease La TERM 1185 892342 - 892311 - f 100 -11.9 -5.85011 | opp_overlap 892311 GAAAAAGTAAAAAAA TAAGTACTAAGTT TTCTTT AACTTAGTACTTA TTTTTTTTAGAAAGA TERM 1186 892311 - 892342 + F 100 -11.9 -5.75342 | opp_overlap 892311 GAAAAAGTAAAAAAA TAAGTACTAAGTT TTCTTT AACTTAGTACTTA TTTTTTTTAGAAAGA TERM 1187 892627 - 892650 + F 90 -7.6 -5.01546 | opp_overlap 892629 ACTAAGGAGGTGAAT TACTCTAAGA AAAA TTTTAGAGTA TTTTTATATGGATTT spoIIAA 892658 - 892993 + | anti-sigma F factor antagonist spoIIAB 893010 - 893441 + | anti-sigma F factor sigF 893451 - 894206 + | RNA polymerase sigma-F factor TERM 1188 894258 - 894298 + F 100 -25.8 -3.97388 | opp_overlap 894248 894258 ACAGATGAGATTGAA CTTGAACTGCTCCTTGTC AAGTA GACAAGGAGCAGTTCAAG TTTATGATCAGCTGT TERM 1189 894298 - 894258 - f 100 -25.8 -3.15708 | opp_overlap 894258, overlap 894248 ACAGATGAGATTGAA CTTGAACTGCTCCTTGTC AAGTA GACAAGGAGCAGTTCAAG TTTATGATCAGCTGT spoVAC 894717 - 895175 + | stage V sporulation protein AC spoVAD 895332 - 896351 + | stage V sporulation protein AD spoVAE 896375 - 896731 + | stage V sporulation protein AE TERM 1190 896778 - 896816 + F 73 -7 -4.11412 | opp_overlap 896771 896778 896782, overlap 896771 896790 TTATACTATAATTAA TAAATAATAATCCAGTTT ATA GAACTGTTTTATTATTTA TTTAATTATTAGTTA TERM 1191 896790 - 896804 + F 74 -5 -5.10765 | opp_overlap 896782 896778 896771, overlap 896778 896771 TAATAAATAATAATC CAGTTT ATA GAACTG TTTTATTATTTATTT TERM 1192 897411 - 897399 - g 70 -6.3 -4.15788 | opp_overlap 897389 AAGTGGTGGAATAAA TTCAC TTA GTGAA ATGAATAATATACTT TERM 1193 898022 - 898006 - g 73 -8.1 -3.46783 | GATTTAACTGAAATA GCATATT TAG AATATGC GTCTAAAAAGAAAAT CLL_A0880 896845 - 899361 + | putative calcium-transporting ATPase TERM 1194 899468 - 899495 + G 95 -7.8 -5.46276 | overlap 899462 ATTTTCTGATTTTAA GAAGCTTACAAT TTTT ATTGTTGGCTTC TTTTTTATATGTGTT CLL_A0881 899367 - 901067 + | putative competence protein TERM 1195 901416 - 901401 - g 74 -6.2 -4.47873 | opp_overlap 901401 ATAAGATTTATAAAA GCATAT TAAA ATATGC TTCTGACATGCCACC TERM 1196 901740 - 901760 + G 76 -8.4 -3.66148 | opp_overlap 901726 901721 901739 901742, overlap 901726 901737 TTGATATGTTAATAT CATCATCT GGAGA AGATGATG TGTTTGATTTAGTTG holA 901097 - 902131 + | DNA polymerase III, delta subunit TERM 1197 902260 - 902230 - T 100 -9.8 -5.20633 | opp_overlap 902237, overlap 902234 902237 AAAAAGATAGAAAAA TAAATAACCCACCA AAA TGGTGGGTTTATTA GATTACGCCATAGCG TERM 1198 902256 - 902234 - T 100 -10.6 -5.02777 | opp_overlap 902237, overlap 902230 902237 AGATAGAAAAATAAA TAACCCACCA AAA TGGTGGGTTT ATTAGATTACGCCAT TERM 1199 902253 - 902237 - T 100 -12.3 -4.56117 | opp_overlap 902237, overlap 902234 902230 TAGAAAAATAAATAA CCCACCA AAA TGGTGGG TTTATTAGATTACGC TERM 1200 902237 - 902253 + T 100 -12.3 -4.2528 | opp_overlap 902237 902234 902230 TAGAAAAATAAATAA CCCACCA AAA TGGTGGG TTTATTAGATTACGC rpsT 902526 - 902263 - | ribosomal protein S20 TERM 1201 903653 - 903668 + G 74 -6.2 -4.58424 | opp_overlap 903653 AAATCAGAAAAGAAA CTTCTT ATAA AAGAAG TTTTATCTGCTAATG TERM 1202 903668 - 903653 - g 80 -6.2 -4.84219 | opp_overlap 903653 AAATCAGAAAAGAAA CTTCTT ATAA AAGAAG TTTTATCTGCTAATG gpr 902846 - 903817 + | spore protease TERM 1203 904812 - 904796 - g 74 -6.7 -4.38171 | opp_overlap 904795 GACAGTATATTAAAA TTTTCAT CAA ATGAAAA ATCATTAAATAGTAA CLL_A0885 904388 - 905455 + | stage II sporulation protein P TERM 1204 905561 - 905595 + F 77 -6.7 -4.72272 | gap 1, opp_overlap 905561 ATATTAATGAAATAA GACCATTATTTAGATA AATA TATCTAAA-GGTGGTC TTTTTAATGAGAGAA CLL_A0886 905602 - 905982 + | hypothetical protein TERM 1205 906117 - 906101 - f 84 -9.5 -3.72695 | opp_overlap 906101 ATGGGGGTGACTAAA CTACCTT ATT AAGGTAG TTATATATATGAGTG TERM 1206 906101 - 906117 + F 83 -9.5 -3.64912 | opp_overlap 906101 ATGGGGGTGACTAAA CTACCTT ATT AAGGTAG TTATATATATGAGTG lepA 906126 - 907928 + | GTP-binding protein LepA TERM 1207 907985 - 907968 - f 100 -9.9 -5.94214 | opp_overlap 907968 AACATAAGAAAAAAA GCTGACA AATT TGTCAGC TTTTTTTATCTAAAA TERM 1208 907968 - 907985 + F 100 -9.9 -5.71712 | opp_overlap 907968 AACATAAGAAAAAAA GCTGACA AATT TGTCAGC TTTTTTTATCTAAAA CLL_A0888 908033 - 909172 + | putative oxygen-independent coproporphyrinogen III oxidase hrcA 909357 - 910388 + | heat-inducible transcription repressor HrcA grpE 910427 - 911047 + | co-chaperone GrpE dnaK 911127 - 912977 + | chaperone protein DnaK TERM 1209 913040 - 913014 - f 86 -11.6 -2.71335 | opp_overlap 913014, overlap 913010 TAATATAATAATTCA GAGGGAAGGCAA TGC TCGTCTTCCCTC TTTAAGGTAGAAAAC TERM 1210 913014 - 913040 + F 95 -11.6 -3.59979 | opp_overlap 913010 913014 TAATATAATAATTCA GAGGGAAGGCAA TGC TCGTCTTCCCTC TTTAAGGTAGAAAAC dnaJ 913081 - 914202 + | chaperone protein DnaJ TERM 1211 914216 - 914246 + F 100 -11.4 -5.93809 | opp_overlap 914216 AAAATTAAACAAAAA TCGTTTCAAATTTT AAT AGAATTTGGAACGA TTTTTTTTGTAGAAC TERM 1212 914246 - 914216 - f 90 -7 -5.43974 | opp_overlap 914216 AAAATTAAACAAAAA TCGTTTCAAATTTT AAT AGAATTTGGAACGA TTTTTTTTGTAGAAC CLL_A0893 914474 - 916024 + | ferredoxin-nitrite reductase TERM 1213 916055 - 916091 + F 100 -9 -5.32599 | opp_overlap 916055 TTATTTCTTGTATAA GCTATTTATTTCTTGA TTTTT TTGGGAAATAAATAGC TTTTTATATTTTATA trmB 916304 - 916963 + | tRNA (guanine-N(7)-)-methyltransferase prmA 917130 - 918071 + | ribosomal protein L11 methyltransferase CLL_A0896 918164 - 918928 + | conserved surface protein CLL_A0897 918928 - 920232 + | hypothetical protein TERM 1214 920297 - 920260 - f 70 -5.9 -4.33767 | opp_overlap 920263 ATAAATGTATGAAAA TAAGAAAATATAATTAT CTAT AAAGTTATATTTTCTTA TAGGCTATGTTTTAA CLL_A0898 920449 - 920793 + | HIT family protein rpsU 920930 - 921106 + | ribosomal protein S21 CLL_A0900 921136 - 921585 + | GatB/Yqey domain protein TERM 1215 921621 - 921579 - f 100 -15.4 -3.78902 | opp_overlap 921583 921586 921591, overlap 921583 921591 TAAGGAATATTTAAA TAAATAATAAAAGAACTC TTTTTTT GAGTTCTTTTATTATTTA TAAGATATACAGAAA TERM 1216 921617 - 921583 - f 100 -11.8 -4.49906 | opp_overlap 921583 921586 921591, overlap 921579 921591 GAATATTTAAATAAA TAATAAAAGAACTC TTTTTTT GAGTTCTTTTATTA TTTATAAGATATACA TERM 1217 921583 - 921617 + F 100 -11.8 -3.91144 | opp_overlap 921583 921579 921591, overlap 921586 921591 GAATATTTAAATAAA TAATAAAAGAACTC TTTTTTT GAGTTCTTTTATTA TTTATAAGATATACA TERM 1218 921586 - 921614 + F 82 -9.1 -4.08279 | opp_overlap 921583 921579 921591, overlap 921583 921591 TATTTAAATAAATAA TAAAAGAACTC TTTTTTT GAGTTCTTTTA TTATTTATAAGATAT TERM 1219 921609 - 921591 - f 73 -4.6 -5.10765 | opp_overlap 921586 921583 921591, overlap 921583 921579 AAATAAATAATAAAA GAACTC TTTTTTT GAGTTC TTTTATTATTTATAA TERM 1220 921591 - 921609 + F 70 -4.6 -5.05116 | opp_overlap 921591 921583 921579, overlap 921586 921583 AAATAAATAATAAAA GAACTC TTTTTTT GAGTTC TTTTATTATTTATAA TERM 1221 921675 - 921633 - f 93 -12.4 -3.13191 | opp_overlap 921638, overlap 921638 TTTATAAGATATACA GAAAATCCTTATGTTTAATA TTT TGTTAAACATAAGGATTTTT TTGTTGTCCAAATAA TERM 1222 921638 - 921670 + F 100 -14.5 -5.88565 | opp_overlap 921633 921638 AAGATATACAGAAAA TCCTTATGTTTAATA TTT TGTTAAACATAAGGA TTTTTTTGTTGTCCA TERM 1223 921670 - 921638 - f 100 -12.3 -4.67354 | opp_overlap 921638, overlap 921633 AAGATATACAGAAAA TCCTTATGTTTAATA TTT TGTTAAACATAAGGA TTTTTTTGTTGTCCA yqfC 921838 - 922116 + | sporulation protein YqfC yqfD 922119 - 923249 + | sporulation protein YqfD TERM 1224 924240 - 924252 + G 77 -7.7 -4.08578 | AGCTAGAAGTATTGG TGCTG TTT CAGCA TTTCTAATTCCATTT CLL_A0903 923284 - 925344 + | membrane protein containing HD superfamily hydrolase domain CLL_A0904 925357 - 925857 + | hypothetical protein TERM 1225 926108 - 926081 - g 70 -6.5 -4.08948 | gap 1, opp_overlap 926085, overlap 926082 926085 TAAGTGCAGAAATAA TC-AATACAGCT ATAGA AGCTGTATTAGA TCTAAAAGCAAATTA TERM 1226 926106 - 926082 - g 70 -8 -3.04646 | opp_overlap 926085, overlap 926081 926085 AAGTGCAGAAATAAT CAATACAGCT ATAGA AGCTGTATTA GATCTAAAAGCAAAT TERM 1227 926103 - 926085 - g 71 -7.5 -3.65699 | opp_overlap 926085, overlap 926082 926081 TGCAGAAATAATCAA TACAGCT ATAGA AGCTGTA TTAGATCTAAAAGCA TERM 1228 926159 - 926170 + G 72 -5.8 -4.45544 | opp_overlap 926156 926158 TAGCCAAAAATGCAG CAGC AGGA GCTG TTTTAGTTACTGCAA CLL_A0905 925882 - 926583 + | diacylglycerol kinase/PAP2 family protein TERM 1229 926725 - 926677 - f 93 -10 -4.08164 | gap 1, opp_overlap 926681 926685, overlap 926681 926685 AAAATTTTAGATAAA TTAATAAATGCTCGTAAAATTGC AAAT GATATTTTACGAGCATTTAT-AA TATAAAAAAATAATC TERM 1230 926681 - 926722 + F 91 -13.3 -2.62396 | opp_overlap 926677 926681 926685, overlap 926685 TTTTAGATAAATTAA TAAATGCTCGTAAAATTGC AAAT GATATTTTACGAGCATTTA TAATATAAAAAAATA TERM 1231 926722 - 926681 - f 100 -13.3 -3.65294 | opp_overlap 926681 926685, overlap 926677 926685 TTTTAGATAAATTAA TAAATGCTCGTAAAATTGC AAAT GATATTTTACGAGCATTTA TAATATAAAAAAATA TERM 1232 926685 - 926718 + F 86 -9.7 -4.0162 | opp_overlap 926681 926677 926685, overlap 926681 AGATAAATTAATAAA TGCTCGTAAAATTGC AAAT GATATTTTACGAGCA TTTATAATATAAAAA TERM 1233 926718 - 926685 - f 93 -9.7 -4.4388 | opp_overlap 926685 926681, overlap 926681 926677 AGATAAATTAATAAA TGCTCGTAAAATTGC AAAT GATATTTTACGAGCA TTTATAATATAAAAA TERM 1234 926810 - 926821 + F 73 -5.8 -4.91084 | opp_overlap 926810 926809, overlap 926805 TCGACAGCTTTAAAG TCGC CTTG GCGA TTTTGTTCTTAAATA era 927134 - 928021 + | GTP-binding protein Era recO 928046 - 928795 + | DNA repair protein RecO CLL_A0908 928802 - 929419 + | UBA/TS-N domain protein CLL_A0909 929462 - 930094 + | CBS domain protein TERM 1235 930773 - 930759 - g 74 -4.2 -5.2197 | overlap 930760 TATAAAAAGGAAAAA GGGGAA GAT TTCCCA CAAGATCCTAAAACT TERM 1236 930772 - 930760 - g 73 -7.7 -3.70742 | overlap 930759 ATAAAAAGGAAAAAG GGGAA GAT TTCCC ACAAGATCCTAAAAC TERM 1237 931725 - 931738 + G 72 -6.7 -4.2142 | overlap 931721 ATTAAAACTGTTATA CCTGA AATA TCAGG TTATTTTGAAATATT ppdK 930183 - 932810 + | pyruvate, phosphate dikinase TERM 1238 932892 - 932837 - T 93 -10.1 -3.9163 | opp_overlap 932852, overlap 932852 AAATTATATATTAAA TTAAAAAATAAAAAACACGTAATGG TAAATT CCATTGCGTGTTTTTTATATTCAAA AAATTATAGAGTTTA TERM 1239 932877 - 932852 - T 100 -7.6 -6.04324 | opp_overlap 932852, overlap 932837 TTAAAAAATAAAAAA CACGTAATGG TAAATT CCATTGCGTG TTTTTTATATTCAAA TERM 1240 932852 - 932877 + T 100 -9.8 -5.47159 | opp_overlap 932852 932837 TTAAAAAATAAAAAA CACGTAATGG TAAATT CCATTGCGTG TTTTTTATATTCAAA CLL_A0911 934051 - 932984 - | spore coat protein S CLL_A0912 934239 - 935267 + | deoxynucleotide triphosphohydrolase family protein TERM 1241 935409 - 935397 - f 88 -4.9 -5.87688 | overlap 935404 ATAAGGTAAAAAAAA GAATT ATT AATTC AATTACATGATAAAA TERM 1242 935582 - 935559 - g 79 -6.8 -4.71463 | AAGTAAAAGAACAAA CCGATATAGT GGAT ATTATATCGG AAAGTGTAAGGTTAA CLL_A0913 935516 - 937294 + | DNA primase TERM 1243 938054 - 938040 - g 71 -7.2 -3.77136 | AGAAGAAATTTCAAA GGTAAT GGA ATTACC AGTAGATAAAGTACG rpoD 937300 - 938424 + | RNA polymerase sigma factor RpoD TERM 1244 938426 - 938445 + F 87 -6.4 -5.34555 | opp_overlap 938428, overlap 938428 ATTATCTAGATTAAA AAGCACCT TTAC AGGTGCTC TTTTTTATAGTATAA TERM 1245 938428 - 938443 + F 84 -9 -4.30057 | opp_overlap 938428, overlap 938426 TATCTAGATTAAAAA GCACCT TTAC AGGTGC TCTTTTTTATAGTAT TERM 1246 938443 - 938428 - f 93 -9 -4.81551 | opp_overlap 938426 938428 TATCTAGATTAAAAA GCACCT TTAC AGGTGC TCTTTTTTATAGTAT TERM 1247 939113 - 939099 - g 78 -5.8 -4.88222 | opp_overlap 939099 939101, overlap 939092 939109 ATTAAAATTGAAAAA TACAAT AAA ATTGTA TGCTTCATAAAAGAA CLL_A0915 938517 - 939203 + | hypothetical protein CLL_A0916 939250 - 940041 + | hypothetical protein CLL_A0917 940098 - 940334 + | hypothetical protein CLL_A0918 942001 - 940841 - | prophage LambdaBa04, site-specific recombinase, phage integrase family TERM 1248 940967 - 940977 + g 76 -4 -5.45813 | TCTTTCCTGAATCAC TTTC ATA GAAA TTTTATTTTTTAATA TERM 1249 941569 - 941581 + g 74 -6.3 -4.51743 | TATCATTTAACATTT GCAAT TTT ATTGC TTTATTTAATGCTCC TERM 1250 941700 - 941728 + g 70 -6.2 -4.183 | opp_overlap 941700 941699 941708, overlap 941702 TTTAAATCGCATAAT TTTATTAATCCT AATTG AGGATTAATATA TTTATTAACAGTTCC TERM 1251 941702 - 941726 + g 76 -8.8 -3.68725 | opp_overlap 941700 941699 941708, overlap 941700 TAAATCGCATAATTT TATTAATCCT AATTG AGGATTAATA TATTTATTAACAGTT TERM 1252 942018 - 942033 + r 72 -6.2 -4.40605 | ATTTTCAACTCCCTT TAGAAC ATAT GTTCTA TTTATATTTATAAAT CLL_A0919 942478 - 942041 - | hypothetical protein TERM 1253 942417 - 942431 + g 72 -3.6 -5.33026 | overlap 942404 CATAGCTCATATGGG CTATTT GTA AGATAG TTTTTCTTTAAGTTA CLL_A0920 942940 - 942494 - | transcriptional regulator TERM 1254 943048 - 943094 + H 72 -9 -2.62396 | opp_overlap 943048 TATTCTTTCATATTA TCCTTTTTTGTGATAGAATTAA GGT TTACGATTATCACAAAAAAGGA TAATATAAACACATA CLL_A0921 943163 - 943372 + | putative conjugative transposon egulatory protein CLL_A0922 943385 - 944263 + | phage protein CLL_A0923 944266 - 944472 + | hypothetical protein TERM 1255 945032 - 945014 - g 70 -6.8 -4.05091 | AATTAGAAAATATAA TGACTATA GAC TATAGCCA ACAAGAGGAACTAAG CLL_A0924 944602 - 945291 + | AntB CLL_A0925 945291 - 945506 + | hypothetical protein CLL_A0926 945675 - 945806 + | hypothetical protein CLL_A0927 945893 - 946588 + | phage replication initiation protein CLL_A0928 946602 - 947918 + | replicative DNA helicase CLL_A0929 948018 - 948281 + | hypothetical protein CLL_A0930 948259 - 948384 + | hypothetical protein TERM 1256 948947 - 948925 - g 95 -10.8 -3.98661 | TATACTTATCAGAAA TCTTAGAAAA GTT TTTTCTAAGA GATGTAAATCAACTA CLL_A0931 948498 - 949199 + | hypothetical protein CLL_A0932 949394 - 950035 + | DNA methyltransferase CLL_A0933 950065 - 950268 + | hypothetical protein CLL_A0934 950276 - 950500 + | hypothetical protein CLL_A0935 950572 - 950919 + | hypothetical protein TERM 1257 951241 - 951223 - g 74 -3.8 -5.36441 | overlap 951205 TTCTTATAGAAAAAA GTAGCATC TCA GAAACTAC TAAAAGATTGTATAG CLL_A0936 950925 - 951317 + | putative sigma factor TERM 1258 951397 - 951434 + F 95 -11.7 -3.54424 | gap 1, opp_overlap 951405, overlap 951405 TATAATGTAATTGGT TAAAGAAAGCACTTAGAA AAA TTCTAGGTGCTTT-TTTA TTTAAAAAAATAGAA TERM 1259 951405 - 951427 + F 100 -11.4 -5.63517 | opp_overlap 951405, overlap 951397 AATTGGTTAAAGAAA GCACTTAGAA AAA TTCTAGGTGC TTTTTTATTTAAAAA TERM 1260 951427 - 951405 - f 93 -9.2 -4.42464 | opp_overlap 951405 951397 AATTGGTTAAAGAAA GCACTTAGAA AAA TTCTAGGTGC TTTTTTATTTAAAAA TERM 1261 951503 - 951531 + G 77 -3.1 -5.56264 | AATATTAAATTTAAA GGGGATCAAGT CTTATGT GCTAGATCTCC TTTTTTATGTTTAAG CLL_A0937 951467 - 951649 + | hypothetical protein TERM 1262 951978 - 951968 - g 74 -4 -5.22312 | AGTTATAGTAAAAAA TCTT AGA AAGA AACTAGAAGAATATA TERM 1263 952074 - 952062 - g 70 -6.3 -4.09586 | overlap 952060 ATACAAGTAAAAAGA GTATC ACA GATAC TTAAAGAAGCAGCAA CLL_A0938 951654 - 952292 + | site-specific recombinase CLL_A0939 952588 - 953067 + | hypothetical protein CLL_A0940 953077 - 953535 + | HNH endonuclease domain protein TERM 1264 953722 - 953712 - g 74 -2.6 -5.58179 | CAGCAGAAGAAAAAA TAAA GGT TTTA GCTGATAAAATTGAA CLL_A0941 953624 - 954085 + | phage terminase, small subunit, P27 family TERM 1265 954270 - 954254 - g 80 -5.3 -5.34208 | opp_overlap 954268 AAAAAAAATTAAAAA TAATAAA TGA TTTATTA AAACTTTTTAATTTT CLL_A0942 954088 - 955770 + | putative phage terminase, large subunit TERM 1266 955817 - 955848 + G 81 -3.2 -5.89921 | TGGTTTAAAAATAAG GAAAATATTATTGA TTTA TTAGTAATACTTTC TTTTTTTATTATCAT CLL_A0943 955781 - 955960 + | hypothetical protein CLL_A0944 955968 - 957170 + | phage portal protein, HK97 family CLL_A0945 957171 - 957797 + | phage prohead protease, HK97 family CLL_A0946 957846 - 958931 + | phage major capsid protein, HK97 family CLL_A0947 958979 - 959269 + | hypothetical protein CLL_A0948 959262 - 959582 + | putative phage head-tail adaptor TERM 1267 959612 - 959594 - f 71 -8.2 -2.94747 | overlap 959598 GTAGGTGATTATATA GCAACTCA ATT TGAGTTAC AAGGCTTTAATGATA CLL_A0949 959666 - 960034 + | phage protein, HK97 gp10 family TERM 1268 960341 - 960379 + G 100 -7.1 -5.56264 | gap 1, opp_overlap 960341 ATATCATTATGCAAA TAGATTTAATTGTTTAGC TGAT GC-AGATAATTAAATCTA TTTTTTATATTTAAA CLL_A0950 960039 - 960374 + | Gp10 protein CLL_A0951 960411 - 961010 + | major tail protein CLL_A0952 961058 - 961372 + | Gp12 protein CLL_A0953 961447 - 961878 + | hypothetical protein TERM 1269 961879 - 961911 + F 77 -5 -5.38951 | opp_overlap 961900 AAAAATGATGATTAA TAAGCGAAAGGG AAAATAAAA CTCTTTTGCTTA TTTTTTATGTAAATT TERM 1270 961938 - 961900 - f 74 -4.7 -5.14698 | opp_overlap 961879 AAAGGGAAAATAAAA CTCTTTTGCTTATTTTT TATGT AAATTTAAGCAAAGGAG GTAGATATATATGGG CLL_A0954 961949 - 965209 + | phage tail tape measure protein, family CLL_A0955 965214 - 965930 + | prophage pi2 protein 43 TERM 1271 966043 - 966067 + G 91 -8 -5.00895 | TGAAACTTATGAGCT TGAACTTACT TATCC AGTAGGTTCA TTTTTATATGATAAA TERM 1272 967055 - 967036 - g 100 -5.1 -6.25578 | ATTAAATAAAAAAAA TAGTAAC TTAAAG GTTACTA TGAAAAAACGAGATG CLL_A0956 965927 - 967612 + | Gp14 protein CLL_A0957 967625 - 969076 + | hypothetical protein CLL_A0958 969079 - 969411 + | putative RNA polymerase sigma factor CLL_A0959 969411 - 969566 + | hypothetical protein CLL_A0960 969654 - 969785 + | hypothetical protein CLL_A0961 969823 - 970374 + | hypothetical protein TERM 1273 970380 - 970403 + F 87 -6.1 -5.63517 | opp_overlap 970364 970382 TTTTAAATAGTTTAA GAGAACAAG TATTTT TTTGTTCTC TTTTTTGTTTAAAAG TERM 1274 970458 - 970470 + F 79 -4.8 -5.54338 | overlap 970446 GAAGCAAAGTTTAAG CACC AGCAA GGTG TTTTTATTTTGCTTA TERM 1275 971126 - 971166 + G 84 -10.7 -2.63382 | opp_overlap 971125, overlap 971125 971128 TAAAAATGATTTAAC TATTCTGGAGTATTTTTTT GAT GAGGAAAAACTCCAGAATA ATTGTGAATCTAACG TERM 1276 971128 - 971164 + G 74 -8.9 -2.85712 | opp_overlap 971125, overlap 971126 971125 AAAATGATTTAACTA TTCTGGAGTATTTTTTT GAT GAGGAAAAACTCCAGAA TAATTGTGAATCTAA CLL_A0963 970542 - 971189 + | hypothetical protein CLL_A0962 971331 - 971176 - | hypothetical protein TERM 1277 971409 - 971430 + H 100 -9.5 -5.18643 | TATCTATTTTAGATG GCACTTACA GAAA TGTAGGTGC TTTTATTTTACTTAA CLL_A0964 971486 - 971698 + | hypothetical protein CLL_A0965 971712 - 971888 + | hypothetical protein TERM 1278 971881 - 971905 + F 75 -5.7 -4.98531 | opp_overlap 971878 971883, overlap 971883 GAGAAAAAGAGATTA AAGAGTAGCCT TTA AGGTTGCTCTA TTTTTAATTTAAGAA TERM 1279 971883 - 971903 + F 79 -8.3 -4.11472 | opp_overlap 971878 971883, overlap 971881 GAAAAAGAGATTAAA GAGTAGCCT TTA AGGTTGCTC TATTTTTAATTTAAG CLL_A0966 971934 - 972734 + | autolytic lysozyme TERM 1280 972780 - 972813 + F 100 -11.9 -4.91852 | opp_overlap 972776 972780 GATTTAGAAAACGAA GGGTAACAGATAGGA GAAA TCTTGTTTGTTACCC TTTATTTTTAATAAA CLL_A0967 972926 - 973327 + | putative lipoprotein TERM 1281 973374 - 973405 + F 100 -11 -5.34655 | opp_overlap 973383 ATTTATAATTTTAAG GGTAGCAGATAAGA AAAA TCTTATTTGCCACC TTTTATTTTTCGTTA TERM 1282 973524 - 973556 + F 76 -6.3 -4.84914 | opp_overlap 973524 973522 TAAATAAATAGAAGA GAGGTAGCAAAGA TTAATTT TCAATGCTACCTC TTTTATTATATAAAT TERM 1283 973760 - 973785 + F 100 -9.1 -5.33331 | opp_overlap 973754 973760 973763 TCGTACAAATATGAA GAACACTAGGT TAAC GTCTAGTGTTC TTTTTATTGTATTTA TERM 1284 973785 - 973760 - f 72 -7.7 -3.50335 | opp_overlap 973760, overlap 973754 973763 TCGTACAAATATGAA GAACACTAG GTTAACGT CTAGTGTTC TTTTTATTGTATTTA TERM 1285 973826 - 973804 - f 95 -12 -3.36327 | opp_overlap 973794 973809, overlap 973806 TTATTGTATTTAGAA TACCACCGGT TAG ACCGGTGGTT CCGGAAAGCTTTTAG TERM 1286 973824 - 973806 - f 100 -14.6 -3.25102 | opp_overlap 973794 973809, overlap 973804 ATTGTATTTAGAATA CCACCGGT TAG ACCGGTGG TTCCGGAAAGCTTTT TERM 1287 973809 - 973821 + F 72 -9.1 -2.71011 | opp_overlap 973806 973804, overlap 973794 GTATTTAGAATACCA CCGGT TAG ACCGG TGGTTCCGGAAAGCT CLL_A0968 973926 - 974243 + | transposase, family CLL_A0969 974577 - 974777 + | UviB homologous protein CLL_A0970 975653 - 975087 - | hypothetical protein TERM 1288 976036 - 976022 - g 79 -3.6 -5.56372 | AAAGGAAAATAAAAA GAAAAA ATC TCTTTC AATATTTATGGGATT TERM 1289 976082 - 976058 - g 73 -8.8 -3.13371 | overlap 976056 976054 TATGGGATTAATATA TGTTATTACT TTTTT AGTAATAACA ACACCTTTAGTATTA CLL_A0971 975963 - 977006 + | hypothetical protein CLL_A0972 977025 - 978062 + | hypothetical protein TERM 1290 978098 - 978075 - f 100 -8.3 -5.46129 | opp_overlap 978075 TAAGAAAGTAAAAAA GCTACTAAA TTTAAC TTTAGTAGC TTTTCACAAAAAAAA TERM 1291 978075 - 978098 + F 79 -8.3 -4.07568 | opp_overlap 978075 TAAGAAAGTAAAAAA GCTACTAAA TTTAAC TTTAGTAGC TTTTCACAAAAAAAA CLL_A0973 978215 - 979324 + | multiple sugar-binding transport ATP-binding protein MsmK CLL_A0974 979346 - 980287 + | hypothetical protein TERM 1292 980870 - 980893 + G 80 -9.8 -2.87132 | opp_overlap 980872, overlap 980872 ACATAGAAACTCCAA TAGTATTAAC ATCT GTTAATACTA TATCTAAAAAAGGGA TERM 1293 980872 - 980891 + G 70 -8 -2.98823 | opp_overlap 980872, overlap 980870 ATAGAAACTCCAATA GTATTAAC ATCT GTTAATAC TATATCTAAAAAAGG TERM 1294 980891 - 980872 - g 71 -8 -3.14528 | opp_overlap 980872 980870 ATAGAAACTCCAATA GTATTAAC ATCT GTTAATAC TATATCTAAAAAAGG CLL_A0975 980449 - 981468 + | HTH-type transcriptional regulator MalR malQ 981616 - 983103 + | 4-alpha-glucanotransferase TERM 1295 985194 - 985163 - g 74 -4 -5.22006 | gap 1, opp_overlap 985177 TTATTATAAGAAAAA TAAGAGTAT-TAAGA GGG TATTAGATACTCTTA TTGATGGAACTTTTA CLL_A0977 983103 - 985463 + | glycogen phosphorylase TERM 1296 985655 - 985688 + F 78 -6.2 -5.03145 | opp_overlap 985662, overlap 985662 TTTATTACAAGCCAA TGAAAGAGGATTCA TTAATT TGAGTCCTTTTTTA TTTTTTAGAAAATTA TERM 1297 985662 - 985681 + F 89 -4.3 -6.04324 | opp_overlap 985662, overlap 985655 CAAGCCAATGAAAGA GGATTCA TTAATT TGAGTCC TTTTTTATTTTTTAG TERM 1298 986106 - 986082 - g 71 -4.3 -4.92314 | ATGAATGGAGAAAAA GTGTTTTTATC TAA GATATTAACAC CATGTGAAAATTTTA TERM 1299 987603 - 987583 - g 78 -8.3 -3.92745 | opp_overlap 987576 AAAAAGTTGCAGAAA GTGTTGGTA CAT TACCTACAC ATAATGCTATGTTTA kdpA 985980 - 987719 + | K+-transporting ATPase, A subunit TERM 1300 989041 - 989031 - g 76 -6.8 -4.57787 | opp_overlap 989031 989032, overlap 989032 AGAATATCAAATAAA GGAG GTA CTCC TCTTGTTGTAGCTAA kdpB 987735 - 989801 + | K+-transporting ATPase, B subunit kdpC 989819 - 990424 + | K+-transporting ATPase, C subunit TERM 1301 990499 - 990549 + F 100 -14.6 -4.57482 | opp_overlap 990497, overlap 990545 ATATTAACACAATCT TTATACTATAGTTAAAATAATTAT GAA ATATTTATTTTGGCTATAGTATAA TTTATTTATAAGTAG TERM 1302 992000 - 992045 + G 78 -8.7 -3.77464 | gap 1, opp_overlap 992011 992016, overlap 992016 CCTAGATTTACATTT CAAGCATA-TGATAAAAGTTAT CCA ATAACTTTTTTTGTTATGCTTG TTTCGTCAATAATAT TERM 1303 992016 - 992028 + G 87 -4.9 -5.89921 | opp_overlap 992011 992016, overlap 992000 AAGCATATGATAAAA GTTAT CCA ATAAC TTTTTTTGTTATGCT CLL_A0981 990587 - 993289 + | sensor protein KdpD CLL_A0982 993282 - 993989 + | KDP operon transcriptional regulatory protein KdpE prmA 995074 - 994211 - | ribosomal protein L11 methyltransferase TERM 1304 994836 - 994858 + g 74 -6.4 -4.59089 | opp_overlap 994846 ATTGTATTGTCTGGA GTTAATTCAA TAA TAGAATTAAC TTTGTTTGTAAATTC TERM 1305 995104 - 995162 + H 100 -23.2 -4.66535 | opp_overlap 995119 995128, overlap 995105 995107 TATTTGAATTTATTG ATGTCTTTTAAGTTAGTGTTAATATTAT ACT ATAATATTAACACTAACTTAAAAGATAA TTTGTTTTACAAATT TERM 1306 995105 - 995161 + H 100 -26.7 -3.38836 | opp_overlap 995119 995128, overlap 995104 995107 ATTTGAATTTATTGA TGTCTTTTAAGTTAGTGTTAATATTAT ACT ATAATATTAACACTAACTTAAAAGATA ATTTGTTTTACAAAT TERM 1307 995107 - 995159 + H 100 -27.1 -3.25598 | opp_overlap 995119 995128, overlap 995105 995104 TTGAATTTATTGATG TCTTTTAAGTTAGTGTTAATATTAT ACT ATAATATTAACACTAACTTAAAAGA TAATTTGTTTTACAA TERM 1308 995147 - 995119 - H 91 -13.5 -2.52543 | opp_overlap 995107 995105 995104, overlap 995128 ATGTCTTTTAAGTTA GTGTTAATATTAT ACT ATAATATTAACAC TAACTTAAAAGATAA CLL_A0984 995311 - 996270 + | glycerate dehydrogenase TERM 1309 996341 - 996314 - T 75 -9.3 -2.53112 | opp_overlap 996314, overlap 996313 ATTGAACTTAGGAAT GCTAAAATGAG TATTGT CCCATTTTAGC TTGTTCCTAATATAA TERM 1310 996314 - 996341 + T 70 -7.1 -3.76482 | opp_overlap 996314 996313 ATTGAACTTAGGAAT GCTAAAATGAG TATTGT CCCATTTTAGC TTGTTCCTAATATAA CLL_A0985 997244 - 996456 - | HAD hydrolase, IIB family TERM 1311 996936 - 996948 + g 70 -4.9 -4.76423 | opp_overlap 996936 TTCTACCCCACATAA TACTA TCG TAGTA TTTTCTATATTTCTA CLL_A0986 997554 - 997420 - | hypothetical protein TERM 1312 997681 - 997635 - R 93 -9 -4.84918 | opp_overlap 997635 TTTAGAAATATAAAA TGAATAGTTTTAGAAGAGCATA ATA TATACGTTGCTAAAACTATTCA TTTATATTAATACAT TERM 1313 997635 - 997681 + r 84 -9 -4.24075 | opp_overlap 997635 TTTAGAAATATAAAA TGAATAGTTTTAGAAGAGCATA ATA TATACGTTGCTAAAACTATTCA TTTATATTAATACAT CLL_A0987 998680 - 997892 - | HAD hydrolase, IIB family TERM 1314 997968 - 997988 + g 70 -4.7 -4.72272 | ATGTATTTTGAATGC TGCTTCATA TCT TCTGGAGCA TTTTTCATAACAAAG TERM 1315 998297 - 998313 + g 81 -8.1 -4.35091 | overlap 998312 AACAACTTCATATCT TACATAG AAC CTATGTA TTTGTTCTAAATATT TERM 1316 998858 - 998806 - H 93 -9.7 -4.64657 | opp_overlap 998792 998799 998816 GTAAATTTTTAAAAA GTTTAATTTATATTTTAATTATGAT AGT ATGATAGTTGAAATATAAATTAAAC ACATAGATGAAAAGA TERM 1317 999251 - 999236 - g 74 -6.2 -4.56159 | GGAAGAAAATACAAA TGCATT TATA AATGCA ATTAAGAGTGGAAAA CLL_A0988 998883 - 999620 + | putative hydrolase CLL_A0989 999690 - 1000124 + | spermine/spermidine acetyltransferase TERM 1318 1000600 - 1000626 + F 90 -5.9 -5.86465 | AGTTAATTCTTATTC TCCTCCATAAT CAAAA ATTAAGGGGGA TTTTTTTATGTTATT TERM 1319 1002077 - 1002107 + F 100 -11.4 -4.61147 | opp_overlap 1002081, overlap 1002081 TATAGTTTAAATATT TAAAGGAGTTATTT GAA AAATAGCTCCTTTG TTTTATATAATATTA TERM 1320 1002103 - 1002081 - f 73 -7.8 -3.81137 | opp_overlap 1002077 1002081 GTTTAAATATTTAAA GGAGTTATTT GAA AAATAGCTCC TTTGTTTTATATAAT TERM 1321 1002081 - 1002103 + F 100 -10 -4.84146 | opp_overlap 1002081, overlap 1002077 GTTTAAATATTTAAA GGAGTTATTT GAA AAATAGCTCC TTTGTTTTATATAAT TERM 1322 1002379 - 1002327 - f 75 -7.6 -3.86524 | gap 1, opp_overlap 1002334 1002336 1002337 ATACCTTTTCATAAA TACACACCTTTATGTTATAATAT GTTATAGT ATATTATAACATAA-GATATGTA AACCTTATGAAAAGG CLL_A0992 1002433 - 1002852 + | nucleoside diphosphate kinase TERM 1323 1002993 - 1003043 + T 100 -21.1 -3.85786 | gap 1, opp_overlap 1003000, overlap 1002995 1003000 TTTGAATGTATCTTA TAA-AAAAGGATCCTTAGATAAAG TTTA CTTTATCTAAGGATCCTTTTATTA TTTAGCTGTTTTGAT TERM 1324 1002995 - 1003040 + T 100 -20.9 -4.03611 | opp_overlap 1003000, overlap 1002993 1003000 TGAATGTATCTTATA AAAAAGGATCCTTAGATAAAG TTTA CTTTATCTAAGGATCCTTTTA TTATTTAGCTGTTTT TERM 1325 1003000 - 1003035 + T 100 -20.8 -5.011 | opp_overlap 1003000, overlap 1002995 1002993 GTATCTTATAAAAAA GGATCCTTAGATAAAG TTTA CTTTATCTAAGGATCC TTTTATTATTTAGCT TERM 1326 1003035 - 1003000 - T 100 -20.8 -5.26316 | opp_overlap 1003000 1002995 1002993 GTATCTTATAAAAAA GGATCCTTAGATAAAG TTTA CTTTATCTAAGGATCC TTTTATTATTTAGCT CLL_A0993 1004105 - 1003041 - | spermidine/putrescine ABC transporter, spermidine/putrescine-binding protein TERM 1327 1003203 - 1003227 + g 73 -4.4 -5.14698 | opp_overlap 1003190 1003189, overlap 1003190 AGCACCTTTGTTAGG TGTTGAATAT CCAAT ATAATCAACA TTTTGTTTTGCATTT CLL_A0994 1004892 - 1004092 - | spermidine/putrescine transport system permease protein PotC CLL_A0995 1005728 - 1004886 - | putrescine transport system permease protein PotH TERM 1328 1005334 - 1005320 - G 73 -4.3 -5.00611 | opp_overlap 1005320, overlap 1005316 TATAAAGAAAAGAAA TAGGT CCTAT ACCTA TTTTACCAAGTAACA CLL_A0996 1006770 - 1005721 - | spermidine/putrescine import ATP-binding protein PotA TERM 1329 1006367 - 1006379 + g 71 -4.1 -5.05782 | overlap 1006359 1006356 TGTCCACCACTTAAT GAAGT GAT GCTTC TTTTTTCAAATCCCT CLL_A0997 1007334 - 1006795 - | DNA-binding protein TERM 1330 1007463 - 1007443 - H 71 -7.1 -3.89085 | opp_overlap 1007445 ATAAGTAAAAATCAA TATTTTTTT GTT AAAAAAATA AAAAAAATATTCGTT TERM 1331 1008188 - 1008200 + G 100 -4.9 -6.34616 | opp_overlap 1008188 AAACAACATTTAAAC TTACT AAG AGTAA TTTTTTTTATTTTAA CLL_A0998 1007701 - 1008804 + | putative acetyltransferase, gnat family CLL_A0999 1008878 - 1009735 + | hypothetical protein TERM 1332 1009864 - 1009809 - T 90 -11 -3.1462 | opp_overlap 1009809 1009811 1009825, overlap 1009825 AATTCATTAAAAGCA TGAAAAAATAAAAAAATGTAATGATT AATT AATCATTACATTTTTTTATTTATGTA TATATATTAACTATA TERM 1333 1009809 - 1009864 + T 95 -13.2 -3.11786 | opp_overlap 1009809 1009825, overlap 1009811 1009825 AATTCATTAAAAGCA TGAAAAAATAAAAAAATGTAATGATT AATT AATCATTACATTTTTTTATTTATGTA TATATATTAACTATA TERM 1334 1009811 - 1009862 + T 95 -13.6 -3.11207 | opp_overlap 1009809 1009825, overlap 1009809 1009825 TTCATTAAAAGCATG AAAAAATAAAAAAATGTAATGATT AATT AATCATTACATTTTTTTATTTATG TATATATATTAACTA TERM 1335 1009848 - 1009825 - T 100 -9.8 -6.28401 | opp_overlap 1009811 1009809 1009825, overlap 1009809 GAAAAAATAAAAAAA TGTAATGATT AATT AATCATTACA TTTTTTTATTTATGT TERM 1336 1009825 - 1009848 + T 100 -9.8 -6.04953 | opp_overlap 1009825 1009809, overlap 1009811 1009809 GAAAAAATAAAAAAA TGTAATGATT AATT AATCATTACA TTTTTTTATTTATGT CLL_A1000 1011283 - 1009883 - | amino acid carrier protein AlsT TERM 1337 1011568 - 1011593 + r 100 -7.7 -5.28683 | opp_overlap 1011568, overlap 1011571 ATTTTAATAAAAAAA CAACACATTAA AAAA TTAATGTGTCG TTTTTTCATATTAAT TERM 1338 1011593 - 1011568 - R 100 -9.9 -5.80364 | opp_overlap 1011568 1011571 ATTTTAATAAAAAAA CAACACATTAA AAAA TTAATGTGTCG TTTTTTCATATTAAT TERM 1339 1011571 - 1011590 + r 70 -8 -3.44212 | opp_overlap 1011568, overlap 1011568 TTAATAAAAAAACAA CACATTAA AAAA TTAATGTG TCGTTTTTTCATATT CLL_A1001 1014117 - 1011604 - | membrane carboxypeptidase MrcB TERM 1340 1011878 - 1011891 + g 70 -5.3 -4.47456 | opp_overlap 1011869 1011868, overlap 1011869 AATAATGCAGGCGTA TTAGC GCCA GCTAA TTTATTATTAAGTCT TERM 1341 1014278 - 1014254 - g 78 -8.1 -3.94086 | TAAGAAACGAAAATA TATACCAATTA TAG TAATTAGTATA GCCCTTGTTATTATC TERM 1342 1014811 - 1014795 - g 72 -7.3 -4.02075 | opp_overlap 1014800 GAAATAGTAACTAAA GTACCTG TAT CAGATAC AATTATAGTAGGTAA CLL_A1002 1014219 - 1014866 + | sporulation protein YunB TERM 1343 1014922 - 1014870 - T 100 -11.6 -4.95957 | gap 1, opp_overlap 1014870 CAAAGCAACTAAAAA GAAGAGGCTGTACCAGATTAGAGTT TTTC AAATC-AATCTGATACAGCTCCTTC TTTTTCTTATAATCT TERM 1344 1014870 - 1014922 + T 100 -9.4 -5.2291 | gap 1, opp_overlap 1014870 CAAAGCAACTAAAAA GAAGAGGCTGTACCAGATTAGAGTT TTTC AAATC-AATCTGATACAGCTCCTTC TTTTTCTTATAATCT hpt 1015486 - 1014965 - | hypoxanthine phosphoribosyltransferase TERM 1345 1016920 - 1016904 - g 80 -5.9 -5.04356 | overlap 1016906 GTAAAGAAGCAAAAA TACAAGT TGA ACTTGCA CAACTTAAATATAGA TERM 1346 1016918 - 1016906 - g 70 -6.3 -4.12448 | overlap 1016904 AAAGAAGCAAAAATA CAAGT TGA ACTTG CACAACTTAAATATA CLL_A1004 1016039 - 1017856 + | GTP binding protein TERM 1347 1018824 - 1018809 - g 89 -6.2 -5.37593 | overlap 1018802 TTCTAAATGAAAAAA GAACTT TTCT AAGTTC GTATGAAATAAAAAA CLL_A1005 1018091 - 1018999 + | nucleotidyltransferase domain protein CLL_A1006 1019020 - 1020447 + | transcriptional regulator, GntR family/aminotransferase CLL_A1007 1020435 - 1021082 + | hypothetical protein CLL_A1008 1021269 - 1022009 + | hypothetical protein TERM 1348 1022069 - 1022102 + T 100 -11.9 -5.27923 | opp_overlap 1022071, overlap 1022100 ATGTATATTTGTTAA GACACTTTTTGTTAG ATAC CTAACAGGAGGTGTC TTTTTTATGCAATTA TERM 1349 1022324 - 1022367 + T 100 -9.8 -5.45652 | opp_overlap 1022325, overlap 1022325 TACATTGAAATAAGA ACACCTTTAATATCAACAAG AATT CATATTGATATTAAAGGTGC TTTTTTATTAAAAGT TERM 1350 1022366 - 1022325 - T 100 -15.5 -4.11346 | opp_overlap 1022324 1022325 ACATTGAAATAAGAA CACCTTTAATATCAACAAG AATT CATATTGATATTAAAGGTG CTTTTTTATTAAAAG TERM 1351 1022325 - 1022366 + T 100 -13.3 -3.86307 | opp_overlap 1022325, overlap 1022324 ACATTGAAATAAGAA CACCTTTAATATCAACAAG AATT CATATTGATATTAAAGGTG CTTTTTTATTAAAAG CLL_A1009 1022859 - 1022521 - | hypothetical protein CLL_A1010 1023078 - 1023239 + | hypothetical protein speD 1023407 - 1024225 + | S-adenosylmethionine decarboxylase proenzyme CLL_A1012 1024242 - 1025699 + | arginine decarboxylase speE 1025699 - 1026553 + | spermidine synthase TERM 1352 1026585 - 1026574 - f 70 -3 -5.46276 | AAGATATAGAAAAAA TATG GTTA CATA AATGAAGTGGAGGAA CLL_A1014 1026607 - 1027806 + | saccharopine dehydrogenase TERM 1353 1027985 - 1027934 - f 100 -11.4 -4.30909 | gap 1, opp_overlap 1027940 1027943 1027946, overlap 1027931 1027943 TATATATTAAAATAA TTCTAT-TAAGAATGATGGAGAAAA TTT TTTTCTTCATCATTCTTATATATAA GAGCAAAATAATTTT TERM 1354 1027940 - 1027978 + F 100 -18.6 -2.87132 | opp_overlap 1027934 1027931 1027943, overlap 1027943 1027946 TTAAAATAATTCTAT TAAGAATGATGGAGAAAA TTT TTTTCTTCATCATTCTTA TATATAAGAGCAAAA TERM 1355 1027975 - 1027943 - f 100 -13.7 -3.20769 | opp_overlap 1027943 1027940 1027946, overlap 1027934 1027931 AAATAATTCTATTAA GAATGATGGAGAAAA TTT TTTTCTTCATCATTC TTATATATAAGAGCA TERM 1356 1027943 - 1027975 + F 100 -15.9 -3.58726 | opp_overlap 1027934 1027931 1027943, overlap 1027940 1027946 AAATAATTCTATTAA GAATGATGGAGAAAA TTT TTTTCTTCATCATTC TTATATATAAGAGCA TERM 1357 1027946 - 1027972 + F 100 -11.8 -3.92996 | opp_overlap 1027943 1027934 1027931, overlap 1027943 1027940 TAATTCTATTAAGAA TGATGGAGAAAA TTT TTTTCTTCATCA TTCTTATATATAAGA nspC 1028142 - 1029284 + | carboxynorspermidine decarboxylase TERM 1358 1029330 - 1029359 + T 80 -5.9 -5.1675 | opp_overlap 1029319 1029330 ATAATATTATAAAAA CATTACTAGAA ATTTTACA TTCTAGTAGTG TTTTTTAATAAATCA CLL_A1016 1031560 - 1029392 - | sensory transduction histidine kinase TERM 1359 1030054 - 1030066 + g 74 -4.9 -5.06414 | TTCCCCTAATATATT GAAAA ATT TTTTC TTTTTCTTCAGAACA TERM 1360 1031161 - 1031149 - G 70 -4.9 -4.72986 | opp_overlap 1031149 TATTGGCATTAAAAA GATTT TGC AAATC TTCATCTAATGTTTT TERM 1361 1032469 - 1032451 - g 71 -2.4 -5.54338 | opp_overlap 1032451 GAATTAAAAGAAAAA CCAGTATA CTT TACATTGG ATTTAGATGTATTAG speB 1031842 - 1032687 + | agmatinase TERM 1362 1032754 - 1032785 + T 76 -6 -4.91084 | opp_overlap 1032754 ATAAAATTCAAAAAA GTGTACAATAATTA ATAA TAAAGATTGTACAC TTTTTGAATTTTATT TERM 1363 1032785 - 1032754 - T 83 -6 -5.28315 | opp_overlap 1032754 ATAAAATTCAAAAAA GTGTACAATAATTA ATAA TAAAGATTGTACAC TTTTTGAATTTTATT CLL_A1018 1033913 - 1032828 - | glycerol dehydrogenase TERM 1364 1032863 - 1032883 + g 70 -8.4 -2.63596 | opp_overlap 1032862 1032860 1032863 1032865, overlap 1032865 TAGCTGTTAAAATAG CAGCATAT ACATC ATATGCTG TAATGTCAAATGGCA TERM 1365 1032883 - 1032863 - G 74 -9.1 -2.78508 | opp_overlap 1032863 1032865, overlap 1032862 1032860 1032865 TAGCTGTTAAAATAG CAGCATATA CAT CATATGCTG TAATGTCAAATGGCA TERM 1366 1034346 - 1034328 - g 70 -3.2 -5.30348 | opp_overlap 1034329, overlap 1034329 ATCTAATAATAAAAA CTTTGAAT TTA ATTCAAAT ACTTTAGCCAATATA TERM 1367 1035394 - 1035413 + G 78 -9.4 -3.02649 | opp_overlap 1035394 AGGGGAACAATGGAA TCTTCAAG CAGT CTTGAAGA TGTATCTGGTAAGGT TERM 1368 1035413 - 1035394 - g 79 -9.4 -3.29013 | opp_overlap 1035394 AGGGGAACAATGGAA TCTTCAAG CAGT CTTGAAGA TGTATCTGGTAAGGT CLL_A1019 1034194 - 1036182 + | putative membrane-associated methyl-accepting chemotaxis protein fused to hamp domain TERM 1369 1036246 - 1036271 + F 100 -8.5 -5.5112 | gap 1, opp_overlap 1036235 1036246 ATAACTTAATTAAAA GGAATAAGATCA TAG TG-TCTTATTCC TTTTTTGTTAGTGAG TERM 1370 1036271 - 1036246 - f 82 -8.5 -4.46267 | gap 1, opp_overlap 1036246, overlap 1036235 ATAACTTAATTAAAA GGAATAAGATCA TAG TG-TCTTATTCC TTTTTTGTTAGTGAG CLL_A1020 1036465 - 1037334 + | radical SAM CLL_A1021 1037428 - 1038009 + | hypothetical protein TERM 1371 1038026 - 1038065 + F 81 -5.3 -5.3671 | opp_overlap 1038026 ATTTATGTTTTAAAG GTTATGCCATTGTTAAA TTTTAT TTTAATAATAGTATAAC TTTTTTGCTTGTATT ruvA 1038264 - 1038860 + | holliday junction DNA helicase RuvA ruvB 1038896 - 1039930 + | holliday junction DNA helicase RuvB queA 1039949 - 1040974 + | S-adenosylmethionine:tRNA ribosyltransferase-isomerase tgt 1041116 - 1042255 + | queuine tRNA-ribosyltransferase yajC 1042363 - 1042638 + | preprotein translocase, YajC subunit TERM 1372 1042648 - 1042692 + F 79 -8.1 -4.13767 | overlap 1042651 1042653 AAATAAAATCAATCA TAATGCCTCTTAATGTTTCAT AAA ATGAAGTATTGGGAGGTGTTG TTTTAAAATGGAAAA TERM 1373 1042651 - 1042689 + F 78 -7.6 -4.19746 | overlap 1042648 1042653 TAAAATCAATCATAA TGCCTCTTAATGTTTCAT AAA ATGAAGTATTGGGAGGTG TTGTTTTAAAATGGA TERM 1374 1042653 - 1042687 + F 90 -10.2 -3.69506 | overlap 1042651 1042648 AAATCAATCATAATG CCTCTTAATGTTTCAT AAA ATGAAGTATTGGGAGG TGTTGTTTTAAAATG TERM 1375 1042755 - 1042743 - g 73 -9.1 -2.71924 | opp_overlap 1042746, overlap 1042742 GATCTGTTTGTAAAG GCTCC GTT GGAGC GGTAATATTAAGTTT CLL_A1027 1042700 - 1043074 + | hypothetical protein CLL_A1028 1043322 - 1045484 + | protein export protein SecD TERM 1376 1045586 - 1045616 + F 70 -6.3 -4.19678 | opp_overlap 1045595 AGGCAAGGCGGCAAG TTCAGTTAATAGT GTAAA ACTATTGGCTGGA TTTGTTGACGTATGA TERM 1377 1045678 - 1045708 + F 86 -9.2 -3.84364 | opp_overlap 1045682, overlap 1045674 1045682 TTTTTTGAATGTGAC TAAACCTCCGTA GACAAAA TATGGAGGTTTA TTGATTTCTTTTATA CLL_A1029 1045793 - 1046656 + | DHH domain protein TERM 1378 1046662 - 1046641 - f 80 -2.5 -6.09133 | gap 1, opp_overlap 1046645, overlap 1046642 1046645 TAGTTCAAAAAAAAA TGAACTTTTA AAA TAAAAGTT-A TTGAATCTAAAATAA apt 1046697 - 1047215 + | adenine phosphoribosyltransferase TERM 1379 1047279 - 1047260 - f 100 -12.2 -4.85396 | opp_overlap 1047260 ATAATTAGAAGAAAA GGCTGGTT ACAT AACCAGCC TTTGAATTTACAGAA TERM 1380 1047260 - 1047279 + F 100 -12.2 -3.84451 | opp_overlap 1047260 ATAATTAGAAGAAAA GGCTGGTT ACAT AACCAGCC TTTGAATTTACAGAA TERM 1381 1049482 - 1049468 - g 70 -2.9 -5.36364 | overlap 1049478 TGAAAAAGATAAAAA GTATA AAAGG TATAC TAGATGTATATAGAA relA 1047322 - 1049508 + | GTP pyrophosphokinase dtd 1049520 - 1049969 + | D-tyrosyl-tRNA(Tyr) deacylase TERM 1382 1049965 - 1049975 + F 70 -2.6 -5.48213 | opp_overlap 1049965, overlap 1049965 ATAGTAGTAAAAACT TTTA AAA TAAA TTTTTATTTTAGGTG CLL_A1033 1050001 - 1050603 + | metallo-beta-lactamase family protein TERM 1383 1050715 - 1050728 + G 71 -3.9 -5.1244 | AAGTTTGTAGATGAC GAATA CAAT TATTC TTTTTATATTGATGA TERM 1384 1051336 - 1051320 - g 81 -2.3 -5.95539 | opp_overlap 1051320, overlap 1051323 TGTTAAAGAAAAAAA CATTAAA GAA TTTACTG TTGAATGTGGAAGAC CLL_A1034 1050613 - 1052034 + | oxygen-independent coproporphyrinogen III oxidase 2 TERM 1385 1052659 - 1052648 - g 77 -3 -5.58074 | GAAGCATTAAAAAAA TTCT TGGA AGAA AATTATGAAAATCTT hisS 1052099 - 1053352 + | histidyl-tRNA synthetase TERM 1386 1055171 - 1055184 + G 76 -8.1 -3.73509 | overlap 1055164 TTTAAATTTGGTCCA CCACC ACAT GGTGG TTTAGCATTTGGTCT aspS 1053578 - 1055377 + | aspartyl-tRNA synthetase TERM 1387 1055387 - 1055422 + T 91 -8.5 -5.03994 | opp_overlap 1055394, overlap 1055391 GAATAATACAAATTT TAAGGCACATCATAA TCAATT TTATGATGTGCTTTC TTTTTATATATAAAA TERM 1388 1055391 - 1055418 + T 100 -11.5 -5.02777 | opp_overlap 1055394, overlap 1055387 AATACAAATTTTAAG GCACATCATAA TCAATT TTATGATGTGC TTTCTTTTTATATAT CLL_A1037 1056370 - 1055444 - | protein tyrosine phosphatase II superfamily protein CLL_A1038 1056554 - 1057252 + | hypothetical protein CLL_A1039 1057404 - 1057724 + | conserved protein YtwF TERM 1389 1057737 - 1057771 + F 93 -7.5 -5.13527 | gap 1, opp_overlap 1057737 1057734 TAGCTATTAAAATAA TAAGTTATCTCAA-AT TTTA ATGTTGAGGTAACTTA TTTTATTTATTACTT TERM 1390 1057976 - 1057961 - g 70 -6.2 -4.15854 | AAAGGCATTGCAAAA CACTTA AAAA TAAGTG AAGCAGCTGTCTCTC CLL_A1040 1057856 - 1058611 + | transcriptional regulator, ArsR family/dinitrogenase iron-molybdenum cofactor family protein TERM 1391 1058719 - 1058759 + F 74 -8.7 -2.95207 | gap 1, opp_overlap 1058719 1058725 1058726, overlap 1058725 1058726 TAGGTAGACTCATAA CAGAAAG-GTATTGATAA ACAGAA TTATCAATACTCTTTTTG CTTGTTATAATTTAC TERM 1392 1058726 - 1058751 + F 77 -7.8 -4.11092 | opp_overlap 1058726 1058725 1058719, overlap 1058725 1058719 ACTCATAACAGAAAG GTATTGATAA ACAGAA TTATCAATAC TCTTTTTGCTTGTTA hom 1058954 - 1060255 + | homoserine dehydrogenase TERM 1393 1060475 - 1060453 - f 75 -3.6 -5.47399 | TTAATTTTAAAAAAA TATTAATTAA CAG TTTATTAATA AAGGAGAATAAATAG CLL_A1042 1060615 - 1061175 + | glycerol uptake operon antiterminator regulatory protein glpK 1061271 - 1062767 + | glycerol kinase TERM 1394 1062835 - 1062893 + F 79 -8.4 -4.03793 | GCTTAGAGAATTAGA GTCAAGCACAAAGACGAGTTACTTAATT ATT ATTTATGTAATTTGTGTTTGTGATTGGC TCTTTTGTTATATAA TERM 1395 1063443 - 1063433 - g 80 -5.4 -5.22943 | ATTAAACTTAAAAAA GAAG TTT CTTC AATCAAAAAGGAAAA CLL_A1044 1062923 - 1064353 + | glycerol-3-phosphate dehydrogenase, glpa CLL_A1045 1064366 - 1065619 + | pyridine nucleotide-disulphide oxidoreductase CLL_A1046 1065621 - 1065974 + | molybdopterin oxidoreductase, 4Fe-4S cluster-binding subunit TERM 1396 1066011 - 1065987 - T 100 -15.9 -4.27467 | opp_overlap 1065987 TAATATCAATACAAA TAGTGCACCAA ATT TTGGTGCACTA TTTTATTTTTAATTT TERM 1397 1065987 - 1066011 + T 100 -15.9 -5.36689 | opp_overlap 1065987 TAATATCAATACAAA TAGTGCACCAA ATT TTGGTGCACTA TTTTATTTTTAATTT TERM 1398 1066110 - 1066134 + T 95 -7.2 -5.82172 | opp_overlap 1066110 TTTATAGTATAAAAA TGGACTCGTA TAAAT TACGAATCCA TTTTTTTATATTAAT TERM 1399 1066134 - 1066110 - T 100 -9.4 -4.95155 | opp_overlap 1066110 TTTATAGTATAAAAA TGGACTCGTA TAAAT TACGAATCCA TTTTTTTATATTAAT CLL_A1047 1067559 - 1066249 - | aspartokinase TERM 1400 1067626 - 1067588 - H 90 -5.6 -5.86609 | opp_overlap 1067589 1067615, overlap 1067589 1067617 CCAAAAAAATAAAAA TTATATTTAGTAATAGCA TTT TAATATTACTAAATATAT TTTAGTATATAGTTT TERM 1401 1067625 - 1067589 - H 82 -9.1 -4.08305 | opp_overlap 1067589 1067615, overlap 1067588 1067617 CAAAAAAATAAAAAT TATATTTAGTAATAGCA TTT TAATATTACTAAATATA TTTTAGTATATAGTT TERM 1402 1067589 - 1067625 + H 77 -7 -4.4084 | opp_overlap 1067588 1067589 1067617, overlap 1067615 CAAAAAAATAAAAAT TATATTTAGTAATA GCATTTTAA TATTACTAAATATA TTTTAGTATATAGTT TERM 1403 1067670 - 1067648 - H 76 -9.4 -2.8937 | opp_overlap 1067651, overlap 1067651 ATATAGTTTTATACA TAATAAATTG TAA CAATTTATTA TGCAATATTCAACAA TERM 1404 1068123 - 1068104 - g 70 -2.1 -5.44119 | opp_overlap 1068104 1068107 1068119, overlap 1068107 1068118 TTTATTCCAAAAAAA CAAGGAT TATATG ATCCATG TTTTGAACATGATGC TERM 1405 1068808 - 1068794 - g 74 -8.6 -3.15407 | overlap 1068792 1068790 TATAGTACTAATACA TTCCCA AGC TGGGAA AGAGCTCATCCTAAC TERM 1406 1069110 - 1069091 - g 79 -3.6 -5.5762 | opp_overlap 1069091, overlap 1069105 AGCAAAGAGAAAAAA GCATTTTA CGAA TATAATGC TACATTAATGGAACC CLL_A1048 1068080 - 1072651 + | ferredoxin-dependent glutamate synthase 1 CLL_A1049 1072663 - 1074135 + | glutamate synthase [NADPH] small chain TERM 1407 1074196 - 1074152 - f 80 -6 -5.13741 | opp_overlap 1074157, overlap 1074157 TCAATGTAATAAAAA TTAAAGTAGTATTAGTTTAA TTTGT TAAAACTAATACTACTTTTT TTCTTATTTTTCAAC TERM 1408 1074157 - 1074191 + F 100 -10.3 -6.04419 | opp_overlap 1074152 1074157 GTAATAAAAATTAAA GTAGTATTAGTTTAA TTTGT TAAAACTAATACTAC TTTTTTTCTTATTTT TERM 1409 1074191 - 1074157 - f 100 -10.3 -4.43037 | opp_overlap 1074157, overlap 1074152 GTAATAAAAATTAAA GTAGTATTAGTTTAA TTTGT TAAAACTAATACTAC TTTTTTTCTTATTTT CLL_A1050 1074361 - 1075788 + | amino acid permease family protein CLL_A1051 1075910 - 1076206 + | hypothetical protein TERM 1410 1076237 - 1076285 + F 100 -20.9 -3.922 | opp_overlap 1076241 1076244 1076255, overlap 1076241 1076244 1076255 TTACATTAGTATTAT TCAAGAAGAGATAAAAAATCTAA TTT TTAGATTTTTTATCTCTTCTTAA TTTAATTAAAAATTT TERM 1411 1076281 - 1076241 - f 100 -21.7 -3.10894 | opp_overlap 1076237 1076241 1076244 1076255, overlap 1076244 1076255 ATTAGTATTATTCAA GAAGAGATAAAAAATCTAA TTT TTAGATTTTTTATCTCTTC TTAATTTAATTAAAA TERM 1412 1076241 - 1076281 + F 100 -21.7 -3.61468 | opp_overlap 1076241 1076244 1076255, overlap 1076237 1076244 1076255 ATTAGTATTATTCAA GAAGAGATAAAAAATCTAA TTT TTAGATTTTTTATCTCTTC TTAATTTAATTAAAA TERM 1413 1076244 - 1076278 + F 100 -17.6 -3.93148 | opp_overlap 1076244 1076241 1076255, overlap 1076241 1076237 1076255 AGTATTATTCAAGAA GAGATAAAAAATCTAA TTT TTAGATTTTTTATCTC TTCTTAATTTAATTA TERM 1414 1076278 - 1076244 - f 100 -17.6 -3.69663 | opp_overlap 1076241 1076237 1076244 1076255, overlap 1076241 1076255 AGTATTATTCAAGAA GAGATAAAAAATCTAA TTT TTAGATTTTTTATCTC TTCTTAATTTAATTA TERM 1415 1076267 - 1076255 - f 79 -4.9 -5.48787 | opp_overlap 1076244 1076241 1076237 1076255, overlap 1076244 1076241 AGAAGAGATAAAAAA TCTAA TTT TTAGA TTTTTTATCTCTTCT TERM 1416 1076255 - 1076267 + F 79 -4.9 -5.48787 | opp_overlap 1076255 1076244 1076241, overlap 1076244 1076241 1076237 AGAAGAGATAAAAAA TCTAA TTT TTAGA TTTTTTATCTCTTCT CLL_A1052 1076448 - 1078073 + | hypothetical protein TERM 1417 1078127 - 1078092 - T 83 -6.3 -5.40474 | opp_overlap 1078096, overlap 1078096 ATGTTTGTAAAAAAA TTAAGCTATATTGCT AATATA AGCAATATAGCTTTT TTATTGTAATTAATA TERM 1418 1078123 - 1078096 - T 100 -11.5 -4.03885 | opp_overlap 1078096, overlap 1078092 TTGTAAAAAAATTAA GCTATATTGCT AATATA AGCAATATAGC TTTTTTATTGTAATT TERM 1419 1078096 - 1078123 + T 100 -11.5 -5.59534 | opp_overlap 1078096 1078092 TTGTAAAAAAATTAA GCTATATTGCT AATATA AGCAATATAGC TTTTTTATTGTAATT CLL_A1053 1078724 - 1078242 - | transcriptional regulator, CarD family TERM 1420 1078458 - 1078476 + g 72 -6.8 -4.07618 | opp_overlap 1078471 TAAATTTATTTCATA TCTTTCTT TAG AAGGAAGA TTTAATTCTTCCGGG CLL_A1054 1079052 - 1080059 + | hypothetical protein TERM 1421 1080119 - 1080095 - f 91 -10.3 -3.65201 | opp_overlap 1080098 1080101, overlap 1080098 1080101 TAATATTTGTAATAA TAAGAATTATA TAG TATAATTCTTA TAAAATAAACAATAT TERM 1422 1080098 - 1080116 + F 70 -7.6 -3.32844 | opp_overlap 1080095 1080098 1080101, overlap 1080101 TATTTGTAATAATAA GAATTATA TAG TATAATTC TTATAAAATAAACAA TERM 1423 1080116 - 1080098 - f 75 -7.6 -3.95324 | opp_overlap 1080098 1080101, overlap 1080095 1080101 TATTTGTAATAATAA GAATTATA TAG TATAATTC TTATAAAATAAACAA TERM 1424 1080122 - 1080153 + F 73 -5.4 -4.89852 | opp_overlap 1080125 1080129, overlap 1080125 AGTATAATTCTTATA AAATAAACAATATT ATTT GATATTGTTTATTA TTTTTATAAGTGTAA TERM 1425 1080125 - 1080150 + F 77 -7.1 -4.5448 | opp_overlap 1080125 1080129, overlap 1080122 ATAATTCTTATAAAA TAAACAATATT ATTT GATATTGTTTA TTATTTTTATAAGTG TERM 1426 1080150 - 1080125 - f 75 -6.4 -4.40572 | opp_overlap 1080125 1080122, overlap 1080129 ATAATTCTTATAAAA TAAACAATAT TATTTG ATATTGTTTA TTATTTTTATAAGTG CLL_A1055 1080199 - 1080738 + | rubrerythrin TERM 1427 1080768 - 1080792 + F 100 -11.6 -4.71223 | opp_overlap 1080771 TAGATAATGTTTATA GAAGTAGTTC CTTAA GAACTACTTC TTTTCTATATTATAA TERM 1428 1080789 - 1080771 - f 75 -8.2 -3.50715 | opp_overlap 1080768 ATAATGTTTATAGAA GTAGTTCC TTA AGAACTAC TTCTTTTCTATATTA TERM 1429 1081037 - 1081015 - f 71 -6.4 -4.17296 | opp_overlap 1081018 1081021, overlap 1081018 TTTGATATAGATAAA TAATAGTAGC TAT GCTATTATTA TATAGGAAAAAAATA TERM 1430 1081399 - 1081369 - g 71 -8.5 -2.83674 | overlap 1081366 AGAAACTATTAATCA TCCAGTATATTCA TTTGT TGAACATACTAGA ACAACTGAAACAGTT udk 1081121 - 1081732 + | uridine kinase TERM 1431 1081760 - 1081812 + T 100 -15.4 -4.00589 | opp_overlap 1081761 1081763 1081768, overlap 1081761 1081763 ATATTTATCATACAT ATATTAAAGAGCAGATGTTAAA TAATAAAAT TTTAACATCTGCTCTTTAATAA TTTCATCTGTTTTAA TERM 1432 1081761 - 1081811 + T 100 -18.9 -2.99269 | opp_overlap 1081761 1081763 1081768, overlap 1081760 1081763 TATTTATCATACATA TATTAAAGAGCAGATGTTAAA TAATAAAAT TTTAACATCTGCTCTTTAATA ATTTCATCTGTTTTA TERM 1433 1081811 - 1081761 - T 100 -18.9 -3.02947 | opp_overlap 1081761 1081760 1081763, overlap 1081763 1081768 TATTTATCATACATA TATTAAAGAGCAGATGTTAAA TAATAAAAT TTTAACATCTGCTCTTTAATA ATTTCATCTGTTTTA TERM 1434 1081809 - 1081763 - T 100 -17.1 -3.0682 | opp_overlap 1081761 1081760 1081763, overlap 1081761 1081768 TTTATCATACATATA TTAAAGAGCAGATGTTAAA TAATAAAAT TTTAACATCTGCTCTTTAA TAATTTCATCTGTTT TERM 1435 1081763 - 1081809 + T 100 -17.1 -3.03002 | opp_overlap 1081763 1081761 1081768, overlap 1081761 1081760 TTTATCATACATATA TTAAAGAGCAGATGTTAAA TAATAAAAT TTTAACATCTGCTCTTTAA TAATTTCATCTGTTT TERM 1436 1081804 - 1081768 - T 100 -12.6 -3.92267 | opp_overlap 1081763 1081761 1081760, overlap 1081763 1081761 CATACATATATTAAA GAGCAGATGTTAAA TAATAAAAT TTTAACATCTGCTC TTTAATAATTTCATC CLL_A1057 1082529 - 1081921 - | hypothetical protein CLL_A1058 1084257 - 1082656 - | Na/Pi-cotransporter family protein/PhoU family protein TERM 1437 1083187 - 1083202 + g 79 -3.3 -5.63504 | AATTAAAAAAGCCTT CATAG CTAATT CTATG TTTTTTTGTGCAATT rnz 1085325 - 1084378 - | ribonuclease Z TERM 1438 1084527 - 1084541 + g 81 -8.6 -4.07868 | TACATTCTCCATTTA GTGCTA ATG TAGCAC TTTCTCTAAATGTCA CLL_A1060 1085474 - 1086127 + | HAD hydrolase, family IA CLL_A1061 1086293 - 1087441 + | permease TERM 1439 1087450 - 1087477 + F 100 -11.6 -6.02914 | opp_overlap 1087450 TATGTGATTCTTAAA TATAGGATATAT GTTA ATATATCCTATA TTTTTTTTATATAGA TERM 1440 1087477 - 1087450 - f 95 -11.6 -3.57462 | opp_overlap 1087450 TATGTGATTCTTAAA TATAGGATATAT GTTA ATATATCCTATA TTTTTTTTATATAGA CLL_A1062 1087536 - 1087919 + | hypothetical protein CLL_A1063 1087925 - 1088551 + | hypothetical protein TERM 1441 1088634 - 1088652 + G 83 -10.4 -2.84812 | ATTTATGGTTACAGC CCCTAATA TAC TATTAGGG TGTGATAATGTAAAT CLL_A1064 1088551 - 1088847 + | hypothetical protein TERM 1442 1089296 - 1089320 + G 79 -9.5 -3.27653 | opp_overlap 1089296, overlap 1089294 TGAAAAATTAGTTAA TACATTACTTA AAA TAAGTGATGTA TATTATGATGGAAAT TERM 1443 1089733 - 1089721 - g 77 -4.9 -5.35721 | ATATAATAAGAAAAA GTATA CCG TATAC AGAAATGCTCAAATC TERM 1444 1090137 - 1090127 - g 82 -2.6 -5.9667 | AAAAATAGAAAAAAA TAAT TTT ATTA ATGAAAAAAGTAGAA CLL_A1065 1088868 - 1091336 + | hypothetical protein CLL_A1066 1091371 - 1091580 + | hypothetical protein TERM 1445 1091644 - 1091597 - f 100 -16.1 -5.40004 | opp_overlap 1091597 1091601 TATTAAATCAAAAAA TAAAGTTAGGCTATCTTAA AGTTTAAATA TTAAGATAGCCTAACTTTA TTTTAAAACTGATTT TERM 1446 1091597 - 1091644 + F 100 -18.2 -4.13304 | opp_overlap 1091597, overlap 1091601 TATTAAATCAAAAAA TAAAGTTAGGCTATCTTAAAGT TTAA ATATTAAGATAGCCTAACTTTA TTTTAAAACTGATTT TERM 1447 1091601 - 1091640 + F 100 -14.6 -4.65933 | opp_overlap 1091597, overlap 1091597 AAATCAAAAAATAAA GTTAGGCTATCTTAAAGT TTAA ATATTAAGATAGCCTAAC TTTATTTTAAAACTG TERM 1448 1091694 - 1091657 - f 88 -12.5 -2.75577 | opp_overlap 1091654 1091662 1091668, overlap 1091654 1091653 TTATTTTAAAACTGA TTTGATTTTAATAAAAT TTTT ACTTTATTAAAATCAAA GAATAGTGTTATTAT TERM 1449 1093491 - 1093473 - g 80 -8.9 -3.57144 | TCTTTTAGCTTTAAA TGCAGCT ATAGA AGCTGCA AGAGCTGGAGAAGCA CLL_A1067 1091908 - 1093968 + | methyl-accepting chemotaxis protein TERM 1450 1094010 - 1093972 - f 71 -8.5 -3.03104 | gap 1, opp_overlap 1093970 1093965 1093964 1093972 1093975, overlap 1093969 1093966 1093975 TTTAAAATATAATTA TAAGAGTAGTAAAA-TCT TTTT AGTGTTTTACTACTCTTA ATATTAATATGTTTA TERM 1451 1093972 - 1094010 + F 81 -10.7 -2.55874 | gap 1, opp_overlap 1093972 1093969 1093966 1093975, overlap 1093970 1093965 1093964 1093975 TTTAAAATATAATTA TAAGAGTAGTAAAAT-CT TTTT AGTGTTTTACTACTCTTA ATATTAATATGTTTA TERM 1452 1093975 - 1094007 + F 70 -8 -3.41309 | gap 1, opp_overlap 1093972 1093969 1093966 1093975, overlap 1093972 1093970 1093965 1093964 AAAATATAATTATAA GAGTAGTAAAAT-CT TTTT AGTGTTTTACTACTC TTAATATTAATATGT CLL_A1068 1094109 - 1094432 + | thioredoxin family protein CLL_A1069 1094704 - 1095012 + | hypothetical protein TERM 1453 1095054 - 1095017 - T 86 -11.6 -2.66737 | opp_overlap 1095023, overlap 1095023 AGAATATATAATGGA TTAAAACTCTAACCAA TTAAAT TTGGTTAGAGTTTTAC TATACATAATAAAAG TERM 1454 1095048 - 1095023 - T 95 -10.6 -4.32049 | opp_overlap 1095023, overlap 1095017 TATAATGGATTAAAA CTCTAACCAA TTAAAT TTGGTTAGAG TTTTACTATACATAA TERM 1455 1095023 - 1095048 + T 95 -10.6 -4.3586 | opp_overlap 1095023 1095017 TATAATGGATTAAAA CTCTAACCAA TTAAAT TTGGTTAGAG TTTTACTATACATAA ilvA 1096302 - 1095082 - | threonine dehydratase TERM 1456 1096434 - 1096402 - H 79 -2.4 -6.15536 | gap 2, opp_overlap 1096402 1096407 AAGTAAGAAAAAAAA GCTTATATTTTTAATA TAC TATTAAAAA-A-AAGC TTATATATTTGTATT TERM 1457 1097092 - 1097081 - g 70 -3 -5.20333 | opp_overlap 1097081 GATTGATAATAAAAA TAGT AATT ACTA TTTGTCAAAGACTTA TERM 1458 1097224 - 1097210 - g 70 -5.8 -4.38744 | opp_overlap 1097208 1097210 ATTTAGATAAAATAA TTATAG GTG CTATAA TGTTACTTGTACCCG CLL_A1071 1096630 - 1097394 + | membrane spanning protein CLL_A1072 1097395 - 1097853 + | membrane spanning protein TERM 1459 1097865 - 1097913 + F 100 -19.2 -5.38951 | opp_overlap 1097865 1097867, overlap 1097867 TTAAGAATAAAAAAA TAGCAAGTGCTAATGGGGTTTA TGTAT TGAACACCATTAGCACTTGCTG TTTTTTATATCAGTT TERM 1460 1097913 - 1097865 - f 100 -14.8 -5.95946 | opp_overlap 1097865 1097867, overlap 1097867 TTAAGAATAAAAAAA TAGCAAGTGCTAATGGGGTTTA TGTAT TGAACACCATTAGCACTTGCTG TTTTTTATATCAGTT TERM 1461 1097867 - 1097911 + F 100 -19.6 -4.31943 | opp_overlap 1097865 1097867, overlap 1097865 AAGAATAAAAAAATA GCAAGTGCTAATGGGGTTTA TGTAT TGAACACCATTAGCACTTGC TGTTTTTTATATCAG TERM 1462 1097911 - 1097867 - f 100 -17.4 -4.59954 | opp_overlap 1097867 1097865, overlap 1097865 AAGAATAAAAAAATA GCAAGTGCTAATGGGGTTTA TGTAT TGAACACCATTAGCACTTGC TGTTTTTTATATCAG TERM 1463 1098778 - 1098759 - g 100 -5.8 -6.11243 | opp_overlap 1098759 ACGCAATAAAAAAAA TGAATGCA GCAA TACATTCA ATTGATGGAGTTAAA CLL_A1073 1098095 - 1098988 + | cation efflux protein CLL_A1074 1100205 - 1099213 - | putative K+-dependent Na+/Ca+ exchanger homolog TERM 1464 1099329 - 1099317 - G 72 -4.9 -4.87133 | overlap 1099322 ATTTGTTAAAGAAAA CTAAT CCT ATTAG TAATAAGTTAATAAC TERM 1465 1099685 - 1099722 + g 100 -12.3 -4.29928 | TTAACCTCAATATTG GAATCTACTAAAGAGTT TTTC AATTCATTAGTAGATTC TTTTAGATCTTCATT CLL_A1075 1100321 - 1100202 - | hypothetical protein TERM 1466 1100366 - 1100342 - H 70 -4.5 -4.99035 | opp_overlap 1100334 1100343, overlap 1100343 TTAGTTATATAAAAA GTTATATTTAT ATA ATAAATATAAT TTCCTTTGACATAGA TERM 1467 1100365 - 1100343 - H 72 -8 -3.58698 | opp_overlap 1100334 1100343, overlap 1100342 TAGTTATATAAAAAG TTATATTTAT ATA ATAAATATAA TTTCCTTTGACATAG TERM 1468 1100343 - 1100365 + H 77 -8 -4.07246 | opp_overlap 1100343 1100342, overlap 1100334 TAGTTATATAAAAAG TTATATTTAT ATA ATAAATATAA TTTCCTTTGACATAG CLL_A1076 1100634 - 1102190 + | ABC transporter, ATP-binding protein TERM 1469 1102359 - 1102401 + F 76 -9.4 -2.83846 | opp_overlap 1102372 1102378 1102383 1102386, overlap 1102357 1102356 1102377 1102391 TTTGCTATTTTAGTT AGGTTTGTATATATGATAAT GTA ATCATCATAGATACAAACCG TAGGTTTTGTATCTA TERM 1470 1102426 - 1102378 - f 75 -8.6 -3.49777 | opp_overlap 1102359 1102357 1102356 1102377 1102391, overlap 1102372 1102383 1102386 TTGTATATATGATAA TGTAATCATCATAGATAC-AAACC GTA GGTTTTGTATCTATGATGGCTA-A GCTTAACTTGTTATG TERM 1471 1102422 - 1102383 - f 100 -13.2 -3.25786 | gap 1, opp_overlap 1102359 1102357 1102356 1102377 1102391, overlap 1102372 1102378 1102386 TATATGATAATGTAA TCATCATAGATAC-AAACC GTA GGTTTTGTATCTATGATGG CTAAGCTTAACTTGT TERM 1472 1102419 - 1102386 - f 93 -13.5 -2.80779 | gap 1, opp_overlap 1102359 1102357 1102356 1102377 1102391, overlap 1102372 1102383 1102378 ATGATAATGTAATCA TCATAGATAC-AAACC GTA GGTTTTGTATCTATGA TGGCTAAGCTTAACT TERM 1473 1102486 - 1102462 - f 82 -10.1 -3.06133 | opp_overlap 1102457 1102462 1102472 TAATTTGTTATCTAA GCCACATAG ATTGATG CTATGTGGC TTTTTTATGTTAGAT TERM 1474 1102462 - 1102486 + F 100 -10.1 -5.48063 | opp_overlap 1102462, overlap 1102457 1102472 TAATTTGTTATCTAA GCCACATAG ATTGATG CTATGTGGC TTTTTTATGTTAGAT TERM 1475 1102537 - 1102505 - f 77 -7.8 -4.05033 | opp_overlap 1102472 1102510, overlap 1102510 TTTATGTTAGATAAA GAAAAGCCACGTAG AAACA CTATGTGGCTTTTT ATATATCAAAAATGA TERM 1476 1102510 - 1102532 + F 100 -9.9 -5.03994 | opp_overlap 1102505 1102510, overlap 1102472 GTTAGATAAAGAAAA GCCACGTAG AAACA CTATGTGGC TTTTTATATATCAAA TERM 1477 1102532 - 1102510 - f 90 -7.7 -5.05113 | opp_overlap 1102472 1102510, overlap 1102505 GTTAGATAAAGAAAA GCCACGTAG AAACA CTATGTGGC TTTTTATATATCAAA brnQ 1102566 - 1103858 + | branched-chain amino acid transport system II carrier protein TERM 1478 1104004 - 1104041 + T 100 -17.2 -2.77901 | opp_overlap 1104009, overlap 1104009 TGTATAGTGGATAAA TGAAACGCCGGCACTT ACTAAA AAGTGCCGGCGTTTTG TAGCTTTATATTATT TERM 1479 1104036 - 1104009 - T 100 -17.1 -4.14397 | opp_overlap 1104004 1104009 AGTGGATAAATGAAA CGCCGGCACTT ACTAAA AAGTGCCGGCG TTTTGTAGCTTTATA TERM 1480 1104009 - 1104036 + T 100 -17.1 -4.52803 | opp_overlap 1104009, overlap 1104004 AGTGGATAAATGAAA CGCCGGCACTT ACTAAA AAGTGCCGGCG TTTTGTAGCTTTATA CLL_A1078 1104924 - 1104061 - | hypothetical protein CLL_A1079 1104991 - 1105134 + | hypothetical protein CLL_A1080 1105306 - 1105689 + | hypothetical protein TERM 1481 1105925 - 1105874 - f 100 -15.6 -3.42366 | opp_overlap 1105888, overlap 1105876 1105877 1105888 GCTAAAATCGTATAA TAGTTTCAAAAAAATAAGAGCCAT TTAA ATGGCTCTTATTTTTCTGAAATGA ATAAATTTCATACAG TERM 1482 1105923 - 1105876 - f 100 -18.2 -3.27721 | opp_overlap 1105888, overlap 1105874 1105877 1105888 TAAAATCGTATAATA GTTTCAAAAAAATAAGAGCCAT TTAA ATGGCTCTTATTTTTCTGAAAT GAATAAATTTCATAC TERM 1483 1105922 - 1105877 - f 100 -21.7 -2.55909 | opp_overlap 1105888, overlap 1105876 1105874 1105888 AAAATCGTATAATAG TTTCAAAAAAATAAGAGCCAT TTAA ATGGCTCTTATTTTTCTGAAA TGAATAAATTTCATA TERM 1484 1105888 - 1105911 + F 100 -12.6 -4.85599 | opp_overlap 1105888 1105877 1105876 1105874 ATAGTTTCAAAAAAA TAAGAGCCAT TTAA ATGGCTCTTA TTTTTCTGAAATGAA TERM 1485 1105911 - 1105888 - f 100 -12.6 -5.42862 | opp_overlap 1105888, overlap 1105877 1105876 1105874 ATAGTTTCAAAAAAA TAAGAGCCAT TTAA ATGGCTCTTA TTTTTCTGAAATGAA CLL_A1081 1106045 - 1106956 + | hypothetical protein TERM 1486 1107198 - 1107170 - f 100 -11.3 -5.71712 | opp_overlap 1107170 TTGTATATAAAAAAA TAAACTCTTATAA TAA CTATAAGAGTTTA TTTTTTTTGGTTGCG TERM 1487 1107170 - 1107198 + F 100 -10.6 -5.95166 | opp_overlap 1107170 TTGTATATAAAAAAA TAAACTCTTATA ATAAC TATAAGAGTTTA TTTTTTTTGGTTGCG CLL_A1083 1107526 - 1107999 + | hypothetical protein glyA 1108120 - 1109355 + | serine hydroxymethyltransferase TERM 1488 1109374 - 1109429 + F 100 -14.6 -3.95071 | gap 1, opp_overlap 1109382 1109394, overlap 1109382 TTTAATTTAATTATT TAAGATAAGCTGTCTCAAAATAGAAAT ATA ATTTCTGTTTTGA-ACAGCTTTTTTTA TTCTTTAGGAATTTA TERM 1489 1109421 - 1109382 - f 95 -11.8 -3.70104 | gap 1, opp_overlap 1109374 1109382, overlap 1109394 AATTATTTAAGATAA GCTGTCTCAAAATAGAAAT ATA ATTTCTGTTTTGA-ACAGC TTTTTTTATTCTTTA TERM 1490 1109382 - 1109421 + F 100 -14 -6.01369 | gap 1, opp_overlap 1109382 1109394, overlap 1109374 AATTATTTAAGATAA GCTGTCTCAAAATAGAAAT ATA ATTTCTGTTTTGA-ACAGC TTTTTTTATTCTTTA CLL_A1085 1109715 - 1110629 + | Ser/Thr protein phosphatase family protein CLL_A1086 1110677 - 1111612 + | membrane dipeptidase fabG 1111841 - 1112584 + | 3-oxoacyl-[acyl-carrier-protein] reductase TERM 1491 1112631 - 1112678 + T 87 -6.8 -5.28166 | gap 2, opp_overlap 1112631 TGAATAGTATAAAAA GCAAGGTAG-ATAAAA-ATATT TTAATT GATATTTTTTATACTACCTTGC TTTTTATTAATTTTA TERM 1492 1112678 - 1112631 - T 78 -6.1 -4.98436 | gap 2, opp_overlap 1112631 TGAATAGTATAAAAA GCAAGGTAG-ATAA-AAATAT TTTAATTG ATATTTTTTATACTACCTTGC TTTTTATTAATTTTA TERM 1493 1112697 - 1112726 + T 75 -6.7 -4.52047 | overlap 1112698 1112721 TTATTAATTTTATTA TTTTTAAAGTAAG CTTC TTTACTTTAAAAG TTTTATGCTATAATA TERM 1494 1112698 - 1112725 + T 70 -8 -3.30505 | overlap 1112697 1112721 TATTAATTTTATTAT TTTTAAAGTAAG CTTC TTTACTTTAAAA GTTTTATGCTATAAT ilvE 1113806 - 1112778 - | branched-chain amino acid aminotransferase nadE 1115857 - 1113959 - | glutamine-dependent NAD(+) synthetase CLL_A1090 1116159 - 1116602 + | nodulation efficiency protein D TERM 1495 1116787 - 1116775 - g 74 -2.7 -5.60993 | TTTGCGAGAAAAAAA GTTTC AAC AAAAC AACAAATTTTAGATG CLL_A1091 1116595 - 1117542 + | spfh domain/band 7 family protein TERM 1496 1117568 - 1117596 + F 100 -11.2 -4.62783 | ATAAAAGCAACTTTG GGCATATTAGGT TTATT ATCTAATATGCC TTTTTAGCGTGCATA CLL_A1092 1117949 - 1119259 + | proton glutamate symport protein TERM 1497 1119274 - 1119314 + F 100 -14.4 -4.96646 | opp_overlap 1119277, overlap 1119277 ACGTTATATTAAAAT AAAGTACCTTAAAATGAT ATGAA ATCATTTTAAGGTACTTG TTTTTAGTTATATGG TERM 1498 1119311 - 1119277 - f 100 -16.1 -4.75288 | opp_overlap 1119274 1119277 TTATATTAAAATAAA GTACCTTAAAATGAT ATGAA ATCATTTTAAGGTAC TTGTTTTTAGTTATA TERM 1499 1119277 - 1119311 + F 100 -16.1 -4.56187 | opp_overlap 1119277, overlap 1119274 TTATATTAAAATAAA GTACCTTAAAATGAT ATGAA ATCATTTTAAGGTAC TTGTTTTTAGTTATA TERM 1500 1120029 - 1120009 - g 71 -7 -3.73587 | overlap 1120022 AACAGATTTAAAAGA TCAATTTG AATTA CAAATTGA AAATTTACAAAATGC CLL_A1093 1119548 - 1120069 + | putative lipoprotein TERM 1501 1120089 - 1120073 - Tf 83 -3.7 -5.86609 | GGAAAAAAATAAAAA TCAGTAT AGT ATTCTGA ATATAATGCAATTTA TERM 1502 1120167 - 1120124 - Tf 100 -12.8 -4.6821 | opp_overlap 1120130 AATTCTAATATAAAA TTGAAAGGCTCAATAAATGT GGAA ATATTTATTGAGCCTTTTAA AATTAACTAGTAAAG TERM 1503 1120130 - 1120161 + TF 100 -14 -4.19953 | opp_overlap 1120124 AATATAAAATTGAAA GGCTCAATAAATGT GGAA ATATTTATTGAGCC TTTTAAAATTAACTA CLL_A1094 1121616 - 1120237 - | Na+ driven multidrug efflux pump CLL_A1095 1121591 - 1121722 + | hypothetical protein CLL_A1096 1121706 - 1122518 + | MerR-family transcriptional regulator CLL_A1097 1122951 - 1123757 + | amino acid ABC transporter, substrate-binding protein TERM 1504 1123917 - 1123903 - g 78 -5.8 -4.90906 | CTAGAACATCAAAAA TTCTTA TGC TAAGAA AGTTAACGGGCATTT CLL_A1098 1123773 - 1124414 + | glutamine ABC transporter, permease/substrate-binding protein CLL_A1099 1124431 - 1125111 + | ATP-binding protein CLL_A1100 1125262 - 1125417 + | hypothetical protein TERM 1505 1125472 - 1125424 - f 77 -7.7 -4.05991 | opp_overlap 1125430, overlap 1125428 1125430 AACAGATAGTAGAAA TTAACAGCTACTAAAAAATGATT TTA ATTCATTTTTTAGTAGCTTTTTT GATGTTTATTTAAAT TERM 1506 1125468 - 1125428 - f 95 -12.9 -3.64299 | opp_overlap 1125430, overlap 1125424 1125430 GATAGTAGAAATTAA CAGCTACTAAAAAATGATT TTA ATTCATTTTTTAGTAGCTT TTTTGATGTTTATTT TERM 1507 1125466 - 1125430 - f 100 -15.5 -3.38986 | opp_overlap 1125430, overlap 1125428 1125424 TAGTAGAAATTAACA GCTACTAAAAAATGATT TTA ATTCATTTTTTAGTAGC TTTTTTGATGTTTAT TERM 1508 1125430 - 1125466 + F 100 -15.5 -5.34055 | opp_overlap 1125430 1125428 1125424 TAGTAGAAATTAACA GCTACTAAAAAATGATT TTA ATTCATTTTTTAGTAGC TTTTTTGATGTTTAT CLL_A1101 1125509 - 1126765 + | voltage gated chloride channel family TERM 1509 1126963 - 1126937 - f 75 -7.4 -4.20074 | opp_overlap 1126937 1126945 AAATATACGTCAAAA GAGGCTGATT GATTAAA AATCAACCTC TTTTTTTAATAATAT TERM 1510 1126937 - 1126963 + F 79 -5.2 -5.56568 | opp_overlap 1126937, overlap 1126945 AAATATACGTCAAAA GAGGCTGATT GATTAAA AATCAACCTC TTTTTTTAATAATAT TERM 1511 1127574 - 1127562 - g 72 -3.5 -5.19275 | ATTGATAAAATAAAA TTATA TTA TATAA ACCCAGTCGATTCAA TERM 1512 1130017 - 1130001 - g 93 -5.3 -5.92337 | ATATATGAAAAAAAA TTAAATA GTG TATTTAA GATAAAAACTGAAGA CLL_A1102 1127154 - 1130900 + | phosphoribosylformylglycinamidine synthase TERM 1513 1130914 - 1130930 + F 93 -9.5 -4.62471 | AATATAAGTGAGAGT CCAAATC TAT GATTTGG TTTTTCGAACTTAGC purE 1131392 - 1131871 + | phosphoribosylaminoimidazole carboxylase, catalytic subunit purC 1131871 - 1132578 + | phosphoribosylaminoimidazole-succinocarboxamide synthase purF 1132694 - 1134121 + | amidophosphoribosyltransferase purM 1134131 - 1135132 + | phosphoribosylformylglycinamidine cyclo-ligase purN 1135120 - 1135734 + | phosphoribosylglycinamide formyltransferase purH 1135883 - 1137388 + | bifunctional purine biosynthesis protein PurH purD 1137640 - 1138890 + | phosphoribosylamine--glycine ligase TERM 1514 1138962 - 1138937 - T 100 -10.6 -4.75219 | opp_overlap 1138937 CAATGATTAAGAAAA GGTTACAACA GGATTT TGTTGTAACC TTTATTTTTAGTGCC TERM 1515 1138937 - 1138962 + T 100 -11.3 -4.91852 | opp_overlap 1138937 CAATGATTAAGAAAA GGTTACAACAG GATT TTGTTGTAACC TTTATTTTTAGTGCC CLL_A1110 1139426 - 1138986 - | hypothetical protein TERM 1516 1139644 - 1139619 - R 100 -10.6 -4.75219 | opp_overlap 1139619 TAATGATTAAGAAAA GGTTACAACA GGATTT TGTTGTAACC TTTATTTTTAGTGCT TERM 1517 1139619 - 1139644 + r 100 -11.3 -4.92756 | opp_overlap 1139619 TAATGATTAAGAAAA GGTTACAACAG GATT TTGTTGTAACC TTTATTTTTAGTGCT CLL_A1111 1140108 - 1139668 - | hypothetical protein TERM 1518 1140297 - 1140330 + r 100 -10.5 -5.14965 | opp_overlap 1140301, overlap 1140301 TTGATAATGATTAAG AAAAGGTTACAACAG GATT TTGTTGTAACCTTTA TTTTTTAGTACCAAT TERM 1519 1140326 - 1140301 - R 100 -10.6 -4.75219 | opp_overlap 1140297 1140301 TAATGATTAAGAAAA GGTTACAACA GGATTT TGTTGTAACC TTTATTTTTTAGTAC TERM 1520 1140301 - 1140326 + r 100 -11.3 -5.0917 | opp_overlap 1140301, overlap 1140297 TAATGATTAAGAAAA GGTTACAACAG GATT TTGTTGTAACC TTTATTTTTTAGTAC CLL_A1112 1140824 - 1140351 - | hypothetical protein CLL_A1113 1141174 - 1142388 + | hypothetical protein CLL_A1114 1142389 - 1143804 + | CoA-binding domain protein TERM 1521 1143986 - 1143963 - f 78 -6.8 -4.77173 | opp_overlap 1143963 TTGTTAGAAAAGAAA TAGTAGTTTC ATAT GAGACTACTA TTTTTTGATTTATAA TERM 1522 1143963 - 1143986 + F 100 -9 -5.42514 | opp_overlap 1143963 TTGTTAGAAAAGAAA TAGTAGTTTC ATAT GAGACTACTA TTTTTTGATTTATAA CLL_A1115 1144092 - 1145531 + | iron-sulfur cluster-binding protein, rieske family TERM 1523 1145772 - 1145748 - f 100 -14.5 -4.81083 | opp_overlap 1145748 CTCAACTATTAAAAA TACTCATATCC AGG GGATATGAGTA TTTTTTATAATTCTT TERM 1524 1145748 - 1145772 + F 100 -14.5 -5.4111 | opp_overlap 1145748 CTCAACTATTAAAAA TACTCATATCC AGG GGATATGAGTA TTTTTTATAATTCTT TERM 1525 1146062 - 1146072 + G 82 -5.4 -5.42198 | opp_overlap 1146062 TGAAGCTCTTAAAAT TCTG CAG CAGA TTTTATTTTTTAAAG TERM 1526 1146890 - 1146874 - g 80 -8.1 -4.21607 | CTTATTCAACAGAAA TTCAACA AAT TGTTGAA GAAGTTGTAAATGAA CLL_A1116 1145922 - 1147085 + | MerR-family transcriptional regulator TERM 1527 1147251 - 1147285 + F 75 -7.9 -3.94724 | opp_overlap 1147251 TATCTAAACAATGGA GGAGAACCAAATCTA AATAA TGGATTGGGCTCTCC TTATTCTATGCTTTC TERM 1528 1147607 - 1147625 + G 71 -2.4 -5.45813 | overlap 1147609 GGTGACACTGAGTAT TATCTTTC ATT GGAAGAAA TTTTATTTTTTGATA CLL_A1117 1147448 - 1147903 + | response regulator of the LytR/AlgR family CLL_A1118 1147905 - 1148603 + | hypothetical protein TERM 1529 1148686 - 1148639 - T 100 -19 -3.95036 | opp_overlap 1148643 1148648, overlap 1148643 1148648 AATTACTTTAAACAA TAAACAAAAGGTTGTCCAAAAT TAAA ATTTTAGACAACCTTTTATTTA TATGAAATTTAATAT TERM 1530 1148643 - 1148682 + T 100 -11 -4.07562 | opp_overlap 1148639 1148643 1148648, overlap 1148648 ACTTTAAACAATAAA CAAAAGGTTGTCCAAAAT TAAA ATTTTAGACAACCTTTTA TTTATATGAAATTTA TERM 1531 1148682 - 1148643 - T 100 -15.4 -4.57581 | opp_overlap 1148643 1148648, overlap 1148639 1148648 ACTTTAAACAATAAA CAAAAGGTTGTCCAAAAT TAAA ATTTTAGACAACCTTTTA TTTATATGAAATTTA TERM 1532 1148648 - 1148677 + T 100 -10.9 -5.05113 | opp_overlap 1148643 1148639 1148648, overlap 1148643 AAACAATAAACAAAA GGTTGTCCAAAAT TAAA ATTTTAGACAACC TTTTATTTATATGAA TERM 1533 1148677 - 1148648 - T 100 -13.1 -5.20331 | opp_overlap 1148648 1148643, overlap 1148643 1148639 AAACAATAAACAAAA GGTTGTCCAAAAT TAAA ATTTTAGACAACC TTTTATTTATATGAA CLL_A1119 1149548 - 1148706 - | DegV family protein CLL_A1120 1149684 - 1150268 + | putative transcriptional regulator, AcrR family CLL_A1121 1152247 - 1150358 - | ABC transporter, permease TERM 1534 1151236 - 1151246 + g 71 -2.6 -5.43487 | opp_overlap 1151236 TATTTTTATCATAAT TATT TAT AATA TTTTTTATGTCATTT TERM 1535 1151583 - 1151548 - G 73 -7.8 -3.79113 | opp_overlap 1151548 1151547 ATGTTCCTATAATAA CTAATATTAGTGTTAC AAAA GAAAAACTAATATTAG CTTTGACAGCGAAGA CLL_A1122 1152998 - 1152249 - | bacitracin export ATP-binding protein BceA TERM 1536 1153127 - 1153110 - R 100 -8.5 -5.71712 | opp_overlap 1153110 1153121 TGTTAGATAAAAAAA TCCTACA TTTC TGTAGGA TTACATATTAAAAAA TERM 1537 1153110 - 1153127 + r 72 -8.5 -3.1855 | opp_overlap 1153110, overlap 1153121 TGTTAGATAAAAAAA TCCTACA TTTC TGTAGGA TTACATATTAAAAAA CLL_A1123 1154672 - 1153128 - | putative ABC transporter, permease protein TERM 1538 1153246 - 1153234 - G 84 -3.5 -5.83226 | AATGGAACAAAAAAA TAAAT TGT ATTTA TAAAGTAAGATGAAG TERM 1539 1153516 - 1153536 + g 70 -4.7 -4.78077 | overlap 1153503 1153518 CTTAAATTCATAATT TGTTCCCTA TTA TAGGGAGAA TTTATTTTAATTGAA TERM 1540 1154251 - 1154233 - G 73 -4.6 -5.13016 | opp_overlap 1154237, overlap 1154237 AATGAAAAGGAAAAA TGAATCCA CAT TGGATTTA TATCAAATAATGAAC CLL_A1124 1155429 - 1154662 - | bacitracin export ATP-binding protein BceA CLL_A1125 1156471 - 1155440 - | two-component sensor histidine kinase CLL_A1126 1157136 - 1156468 - | DNA-binding response regulator TERM 1541 1157709 - 1157727 + G 88 -6.8 -5.30339 | opp_overlap 1157708 1157709 GATTTTACTCATAAT TCCAATTT TAG GAATTGGA TTTTTGTATTTTAAT TERM 1542 1157757 - 1157779 + G 75 -3.4 -5.50313 | overlap 1157761 TACAGAAGCCTCTAT TTTTGGTTTC GTT GAAACCTTAA TTTTTTACTTTTGTA TERM 1543 1157761 - 1157775 + G 80 -8.6 -4.00212 | overlap 1157757 GAAGCCTCTATTTTT GGTTTC GTT GAAACC TTAATTTTTTACTTT TERM 1544 1157905 - 1157874 - g 77 -7.6 -4.12296 | gap 1 TTTACAAGCAAAGAA TCCATTGA-TATTTA CAG TAAACAATCAATGGA TGTCAGTCTTCGCAA CLL_A1127 1157350 - 1158045 + | putative F pilin acetylation protein TERM 1545 1158445 - 1158475 + G 75 -8.4 -3.35679 | opp_overlap 1158444 1158442 TGCAGTGAAGGATAT GGTAACAAATTACT TAA AGAAATTAGTTACC TTATAAATAAGAACA CLL_A1128 1158331 - 1159152 + | hypothetical protein TERM 1546 1159457 - 1159441 - g 73 -3 -5.38054 | gap 1, overlap 1159442 TTCTACAAAGAAAAA GGATTCG ATAA CGAA-CC AACAAGATGTGCAGC CLL_A1129 1159357 - 1159509 + | hypothetical protein TERM 1547 1159548 - 1159526 - f 100 -13.6 -3.32343 | opp_overlap 1159526 TTTAGATTGTTATAA GGTTGTAGTT TTA AACTACAACC TTTTTTGACGTTTAT TERM 1548 1159526 - 1159548 + F 100 -13.6 -5.1361 | opp_overlap 1159526 TTTAGATTGTTATAA GGTTGTAGTT TTA AACTACAACC TTTTTTGACGTTTAT CLL_A1130 1159878 - 1160567 + | alkaline phosphatase synthesis transcriptional regulatory proteinphoP TERM 1549 1161603 - 1161587 - g 74 -2.4 -5.71295 | AGATAAAAAGAAAAA TAATTT AAAAG AAATTA TAGAAGAAGTTTTAG CLL_A1131 1160604 - 1162031 + | two-component sensor histidine kinase TERM 1550 1162054 - 1162040 - f 73 -5.8 -4.8487 | GTATTAAAAAAATAA TAAATG TTA CATTTA CGAAACATGAGTGAA TERM 1551 1162140 - 1162125 - g 77 -6.2 -4.73635 | opp_overlap 1162124, overlap 1162129 CATAAGTGAAGAAAA TTAGCT TAAA AGCTAA GATTATAGGCATATA TERM 1552 1162495 - 1162465 - g 93 -11.5 -3.86252 | opp_overlap 1162473, overlap 1162473 TGGTATGAAAGATAA GTTTAAAATAAGT GATGT ACTTATTTTAAAC AATCGAATGTATCAT CLL_A1132 1162115 - 1162951 + | hypothetical protein CLL_A1133 1162983 - 1164032 + | ABC transporter substrate-binding protein TERM 1553 1164856 - 1164878 + G 70 -6.4 -4.21314 | overlap 1164857 ATGTTTATAGTTCCA TCAATAATAG CAG CTGTTATTGG TTTTACAATGTTATT CLL_A1134 1164256 - 1165674 + | hexose phosphate transport protein TERM 1554 1165747 - 1165778 + F 86 -8.9 -4.48449 | AACAAAATTTTGTTT TATGCAGTTGTTT TTTTGT AATCAACTGCATA TTTCTATTTTAGTAC CLL_A1135 1165898 - 1166581 + | membrane spanning protein CLL_A1136 1166538 - 1166705 + | hypothetical protein TERM 1555 1166820 - 1166854 + F 78 -6.6 -4.77757 | overlap 1166815 1166814 TATGATATGATAAAT GCTTTTCTAGTGAC GAAATAA GTTGTTAGAAAAGC TTTTAATTTTTGCAA CLL_A1137 1167267 - 1168313 + | regulatory protein panE 1168349 - 1169278 + | 2-dehydropantoate 2-reductase TERM 1556 1169312 - 1169293 - f 100 -10.8 -4.6644 | opp_overlap 1169293 AATATAGTTTAAAAA GGCATGTT TTAA AACATGCC TTTTTATTATATTTA TERM 1557 1169293 - 1169312 + F 100 -10.8 -5.33331 | opp_overlap 1169293 AATATAGTTTAAAAA GGCATGTT TTAA AACATGCC TTTTTATTATATTTA TERM 1558 1169572 - 1169558 - g 71 -8.6 -2.80583 | overlap 1169557 1169560 GATTAAAAAAGATAG CAGCTA AAA TAGCTG AAGACGAGTTGAAGC TERM 1559 1169687 - 1169658 - g 77 -6.5 -4.79752 | overlap 1169662 TGGAATAACACAAAA GGAATTAAGTGAA GAAC TTCACTTAAAGCC ATCTACAATAACTAG TERM 1560 1169683 - 1169662 - g 82 -8.9 -3.83346 | overlap 1169658 ATAACACAAAAGGAA TTAAGTGAA GAAC TTCACTTAA AGCCATCTACAATAA CLL_A1139 1169497 - 1169919 + | transcriptional regulator, MarR family TERM 1561 1170073 - 1170109 + F 100 -10.5 -5.27023 | opp_overlap 1170073 ACTATTATAAATAAA TGCTTTTCTAATGAT AAAATAG ATTATTAGAAAAGCA TTTTATTTTTGAAAT TERM 1562 1170109 - 1170073 - f 85 -8.3 -4.59944 | opp_overlap 1170073 ACTATTATAAATAAA TGCTTTTCTAATGAT AAAATAG ATTATTAGAAAAGCA TTTTATTTTTGAAAT CLL_A1140 1170264 - 1171178 + | hypothetical protein CLL_A1141 1171310 - 1171876 + | snare associated golgi protein TERM 1563 1171920 - 1171957 + F 76 -4.4 -5.29885 | opp_overlap 1171920, overlap 1171950 ATATATGATAAGAAA TGCTTTTATAATCAAT AAAATA AGTTATTATAAAAGCA TTTTATTTTTGAATT CLL_A1142 1172030 - 1172956 + | conserved protein, tetratricopeptide repeat family protein CLL_A1143 1173148 - 1173651 + | hypothetical protein TERM 1564 1173777 - 1173741 - T 100 -18.4 -5.18726 | opp_overlap 1173716 1173741, overlap 1173716 TTTTCATAATAAAAA GCTATTACTTAATTGG GTTGT CCAATTAAGTAATAGC TTTATTGTTATTTTA TERM 1565 1173741 - 1173777 + T 100 -19.1 -4.66418 | opp_overlap 1173716 1173741, overlap 1173716 TTTTCATAATAAAAA GCTATTACTTAATTGGG TTG TCCAATTAAGTAATAGC TTTATTGTTATTTTA CLL_A1144 1174447 - 1173797 - | putative lipoprotein TERM 1566 1174230 - 1174246 + g 79 -3.7 -5.59534 | opp_overlap 1174230 TCTTCAGTGTATATA GAAAATG CTT CAGTTTC TTTTTTATTATCATT CLL_A1145 1174699 - 1175148 + | MarR-family transcriptional regulator TERM 1567 1175358 - 1175341 - g 70 -8.5 -2.75294 | overlap 1175340 TGAAAGCCGCTAAAG TTGCTCT TGAA AGAGCAA AGATTGATTCTGAAG fabH 1175163 - 1176131 + | 3-oxoacyl-(acyl-carrier-protein) synthase III CLL_A1147 1176203 - 1176427 + | acyl carrier protein homolog TERM 1568 1176451 - 1176486 + F 77 -7.7 -4.11404 | overlap 1176456 ATATTAACATCCAAG TTAAGTCGGGTATGC AAATAA GTATTCCCGATTTAA TTTATATAATGTAAG CLL_A1148 1176537 - 1177478 + | putative enoyl-(acyl-carrier-protein) reductase II fabD 1177471 - 1178412 + | malonyl CoA-acyl carrier protein transacylase fabG 1178433 - 1179173 + | 3-oxoacyl-[acyl-carrier-protein] reductase fabF 1179191 - 1180432 + | 3-oxoacyl-[acyl-carrier-protein] synthase 2 TERM 1569 1180491 - 1180461 - g 71 -8.6 -2.79004 | opp_overlap 1180460 1180469, overlap 1180465 1180468 GGATTTTCAAAACAT TAAAGAACTTATAA ATA TTATAAATTCTTCA GATTTAGCTTACTTT TERM 1570 1180487 - 1180465 - g 75 -7.2 -4.07678 | opp_overlap 1180460 1180469, overlap 1180461 1180468 TTTCAAAACATTAAA GAACTTATAA ATA TTATAAATTC TTCAGATTTAGCTTA accB 1180444 - 1180938 + | acetyl-CoA carboxylase, biotin carboxyl carrier protein fabZ 1180944 - 1181372 + | beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ accC 1181382 - 1182734 + | acetyl-CoA carboxylase, biotin carboxylase accD 1182727 - 1183602 + | acetyl-CoA carboxylase, carboxyl transferase, beta subunit accA 1183595 - 1184419 + | acetyl-CoA carboxylase, carboxyl transferase, alpha subunit TERM 1571 1184449 - 1184474 + F 100 -13.5 -5.35354 | opp_overlap 1184449 TGACTTTTAATATAA GCTCAAAAGAT TGCA ATCTTTTGAGC TTTTTTGATTATATA TERM 1572 1184474 - 1184449 - f 100 -13.5 -3.66784 | opp_overlap 1184449 TGACTTTTAATATAA GCTCAAAAGAT TGCA ATCTTTTGAGC TTTTTTGATTATATA CLL_A1157 1184600 - 1185541 + | hypothetical protein TERM 1573 1185549 - 1185525 - f 72 -8.1 -3.24255 | opp_overlap 1185524 1185521 1185525, overlap 1185518 TAATAGAATACTTAA CTTTATTGTTA ATA TAACAATAAAA ATTAATATTAAAGGA TERM 1574 1185612 - 1185596 - g 78 -9.5 -3.0375 | overlap 1185586 1185595 AGTAATAGCACAAAG GTTGCTA AAA TAGCAAC TAAAATGGCTATATG CLL_A1158 1185575 - 1185988 + | HutP superfamily TERM 1575 1186109 - 1186148 + F 100 -11.9 -5.55769 | opp_overlap 1186113 TACTTATATTATTAG GATAGATATTAAGATAA GAAGAA TTATTTTAATATCTATC TTTTTTATTATAGGG CLL_A1159 1186273 - 1186389 + | hypothetical protein CLL_A1160 1186386 - 1187186 + | oxidoreductase, short chain dehydrogenase/reductase family TERM 1576 1187259 - 1187291 + F 100 -18.1 -5.28778 | opp_overlap 1187259 TATAAATTGAAAAAA CAGCAATAATTATCA ATT TGATAATTATTGCTG TTTTTTATGCGTAAT TERM 1577 1187291 - 1187259 - f 100 -18.1 -5.24449 | opp_overlap 1187259 TATAAATTGAAAAAA CAGCAATAATTATCA ATT TGATAATTATTGCTG TTTTTTATGCGTAAT TERM 1578 1187368 - 1187333 - f 87 -10.8 -3.15013 | opp_overlap 1187334 1187343, overlap 1187331 1187343 ATTGTAGAATAGAGA CTTATCAAAATGATAA TGCA TTATCACTTTGATAAA CAATTATTTTTATAG CLL_A1161 1187600 - 1190155 + | selenium-dependent molybdenum hydroxylase 1 TERM 1579 1190210 - 1190156 - f 74 -6.1 -4.72201 | gap 2, opp_overlap 1190166, overlap 1190158 1190166 TTCTATAAAAAATAA TGCTATAAAAGGGATGTACTATCTTGA ATT TCA-GATGGTATATCCCTTTTA-AGAA TAATTATAAATTGAA TERM 1580 1190208 - 1190158 - f 72 -8.7 -2.64257 | gap 2, opp_overlap 1190166, overlap 1190156 1190166 CTATAAAAAATAATG CTATAAAAGGGATGTACTATCTTGA ATT TCA-GATGGTATATCCCTTTTA-AG AATAATTATAAATTG TERM 1581 1190201 - 1190166 - f 77 -7 -4.44461 | gap 1, opp_overlap 1190166, overlap 1190158 1190156 AATAATGCTATAAAA GGGATGTACTATCTTGA ATT TCA-GATGGTATATCCC TTTTAAGAATAATTA TERM 1582 1190166 - 1190201 + F 100 -11.4 -4.12902 | gap 1, opp_overlap 1190166 1190158 1190156 AATAATGCTATAAAA GGGATGTACTATCTTGA ATT TCA-GATGGTATATCCC TTTTAAGAATAATTA CLL_A1162 1190241 - 1190918 + | hypothetical protein CLL_A1163 1190918 - 1191940 + | molybdopterin biosynthesis protein TERM 1583 1192263 - 1192237 - g 80 -8.2 -4.18197 | overlap 1192255 AGCTTTTACCTAAAA CTTTAGAAGT TGAAGTT ACTTCTAAAG TAAAAGTAACAGGAA moaC 1191954 - 1192433 + | molybdenum cofactor biosynthesis protein C TERM 1584 1192707 - 1192684 - g 71 -3.8 -5.1523 | opp_overlap 1192691 TTCATAATATAAAAA TTACAGGGGG GGAA CCTCTTGTAA GAAAAGATATAGTTA TERM 1585 1193342 - 1193331 - g 78 -4.4 -5.47218 | CTGGACTTAAAAAAA GCTT TAAG AAGC GGGATCAATGAAGAA moaA 1192494 - 1193474 + | molybdenum cofactor biosynthesis protein A CLL_A1166 1193477 - 1193932 + | mosc domain protein TERM 1586 1193948 - 1193992 + F 95 -5.4 -6.01725 | gap 1, opp_overlap 1193948 1193941 ATATTGAATAAAATG GCATTAAATAAAC-ATTTAAT TTGA ATTATTTTGTTTATTTAATGC TTTTTTATTTTTCTT CLL_A1167 1194104 - 1195390 + | ATPase, AAA family CLL_A1168 1195427 - 1195870 + | Rrf2 family protein TERM 1587 1196602 - 1196590 - g 70 -4.9 -4.66938 | AGCTGGAACAGAAAA TATAG CTT CTATA GTAGGTCTTGGTAAA nifS 1195874 - 1197055 + | cysteine desulfurase NifS nifU 1197057 - 1197494 + | FeS cluster assembly scaffold protein NifU TERM 1588 1197527 - 1197562 + G 81 -8.4 -4.15044 | gap 1 AAAAGTCTTAGTAGG TATG-AGTGGCGGAGTT GAT AGCTCCGTCGCTGCGTA TTTATTAAAAGAACA TERM 1589 1197760 - 1197749 - g 86 -4.4 -5.75342 | opp_overlap 1197735 1197749 TTCTTTTAAAAAAAA GGTT ATTG AACC ATTTATTCAAGAGTA trmU 1197495 - 1198580 + | tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase TERM 1590 1198598 - 1198631 + F 100 -13.5 -5.99154 | gap 1, opp_overlap 1198602 AATAAAATTCTTTAG GCAATGATACTA-GAA AAT TTCATAGTATCATTGC TTTTTTTATTTACTA TERM 1591 1198798 - 1198809 + F 75 -5.8 -4.97957 | opp_overlap 1198798 1198797, overlap 1198793 TCGATATCTCTAAAG TCGC CTTA GCGA TTTTGTTCTTATATA CLL_A1172 1199024 - 1199524 + | PRC-barrel domain protein CLL_A1173 1199502 - 1200533 + | permease TERM 1592 1200785 - 1200814 + F 100 -8 -5.76633 | gap 1, opp_overlap 1200785 1200783 ACCGCGGAAATAATA GCTTTCGTCCCTT TTTAT AAGGGA-GAGAGC TTTTTTTGTATATGA alaS 1200903 - 1203542 + | alanyl-tRNA synthetase CLL_A1175 1203737 - 1203994 + | hypothetical protein TERM 1593 1203993 - 1204024 + F 83 -7.3 -5.02074 | opp_overlap 1203996, overlap 1203996 ATTTAGAGATAAAGT AAAGAGTGCCCGT ATTATA ACGGGTGCTCTTA TTTTTTAAGAGGTGC TERM 1594 1203996 - 1204021 + F 89 -9 -4.61482 | opp_overlap 1203996, overlap 1203993 TAGAGATAAAGTAAA GAGTGCCCGT ATTATA ACGGGTGCTC TTATTTTTTAAGAGG CLL_A1176 1204046 - 1204459 + | hypothetical protein TERM 1595 1204458 - 1204436 - f 75 -9.4 -2.75039 | opp_overlap 1204435 1204438, overlap 1204438 TACATACTTCAAGGA TATTTAGATA GAA TATCTAAATA ATATTAAAATTTATA CLL_A1177 1204669 - 1204935 + | hypothetical protein CLL_A1178 1204979 - 1205443 + | transcriptional regulator, Fur family TERM 1596 1206398 - 1206384 - g 84 -5.8 -5.27477 | ATCCTAATGAAAAAA TTGTTA TAA TAACAA CAGGAAGCCAAGGAG CLL_A1179 1205507 - 1207174 + | RNA-metabolising metallo-beta-lactamase family protein TERM 1597 1207254 - 1207284 + F 93 -9.9 -4.07568 | opp_overlap 1207259 1207280, overlap 1207259 1207266 AAAACAGTGGTTATA GGAGATTGGATAC TTTTT GTATCCAATTTTC TTTTGGAGAAAAAAA TERM 1598 1207259 - 1207279 + F 91 -8.4 -5.07652 | opp_overlap 1207259, overlap 1207254 1207266 AGTGGTTATAGGAGA TTGGATAC TTTTT GTATCCAA TTTTCTTTTGGAGAA TERM 1599 1207702 - 1207714 + G 70 -6.3 -4.07687 | GAAGGTCCTATGCCT CAAAC TAA GTTTG TTTTAAAGAAGGCAT typA 1207369 - 1209195 + | GTP-binding protein TypA/BipA TERM 1600 1209278 - 1209228 - f 95 -8.1 -5.25799 | gap 1, opp_overlap 1209233 1209235 1209238 1209242, overlap 1209230 1209232 1209233 1209235 AAAATAATATAAAAA GATATTATAATAAAGTAAATGGTC TTCT GACTATTTACTTTATTATA-TATT ACGGAGGAACTTTAT TERM 1601 1209276 - 1209230 - f 95 -10.7 -4.20977 | gap 1, opp_overlap 1209233 1209235 1209238 1209242, overlap 1209228 1209232 1209233 1209235 AATAATATAAAAAGA TATTATAATAAAGTAAATGGTC TTCT GACTATTTACTTTATTATA-TA TTACGGAGGAACTTT TERM 1602 1209275 - 1209232 - f 95 -11.4 -3.66691 | opp_overlap 1209233 1209235 1209238 1209242, overlap 1209230 1209228 1209233 1209235 TAATATAAAAAGATA TTATAATAAAGTAAATGGTC TTCT GACTATTTACTTTATTATAT ATTACGGAGGAACTT TERM 1603 1209274 - 1209233 - f 100 -14.9 -2.78388 | opp_overlap 1209233 1209235 1209238 1209242, overlap 1209232 1209230 1209228 1209235 AATATAAAAAGATAT TATAATAAAGTAAATGGTC TTCT GACTATTTACTTTATTATA TATTACGGAGGAACT TERM 1604 1209233 - 1209274 + F 100 -17.1 -3.01791 | opp_overlap 1209232 1209230 1209228 1209233 1209235, overlap 1209235 1209238 1209242 AATATAAAAAGATAT TATAATAAAGTAAATGGTC TTCT GACTATTTACTTTATTATA TATTACGGAGGAACT TERM 1605 1209272 - 1209235 - f 93 -13.1 -2.91239 | opp_overlap 1209235 1209233 1209238 1209242, overlap 1209233 1209232 1209230 1209228 TATAAAAAGATATTA TAATAAAGTAAATGGTC TTCT GACTATTTACTTTATTA TATATTACGGAGGAA TERM 1606 1209235 - 1209272 + F 100 -15.3 -3.06696 | opp_overlap 1209233 1209232 1209230 1209228 1209235, overlap 1209233 1209238 1209242 TATAAAAAGATATTA TAATAAAGTAAATGGTC TTCT GACTATTTACTTTATTA TATATTACGGAGGAA TERM 1607 1209238 - 1209269 + F 95 -12.6 -3.68024 | opp_overlap 1209235 1209233 1209232 1209230 1209228, overlap 1209235 1209233 1209242 AAAAAGATATTATAA TAAAGTAAATGGTC TTCT GACTATTTACTTTA TTATATATTACGGAG TERM 1608 1209242 - 1209265 + F 86 -9 -4.46254 | opp_overlap 1209235 1209233 1209232 1209230 1209228, overlap 1209238 1209235 1209233 AGATATTATAATAAA GTAAATGGTC TTCT GACTATTTAC TTTATTATATATTAC CLL_A1181 1209292 - 1210320 + | hypothetical protein CLL_A1182 1210340 - 1210984 + | O-methyltransferase family protein CLL_A1183 1210991 - 1212226 + | peptidase U32 CLL_A1184 1212392 - 1213906 + | penicillin-binding protein TERM 1609 1214520 - 1214506 - g 79 -3.6 -5.72616 | overlap 1214514 ATCTATACAAAAAAA TCAAAG ATT CTTTAA CCAAAAGAGAAAGTA TERM 1610 1214658 - 1214646 - g 87 -2.7 -6.12328 | AGAATAGAAAAAAAA GCTTT GAA AAAAC TAAAAAAAGAATTAT sigK 1213989 - 1214687 + | RNA polymerase sigma-K factor TERM 1611 1214729 - 1214690 - f 87 -10.3 -3.11962 | gap 1, opp_overlap 1214696, overlap 1214696 TGGTAAGATATAAAG TAAAAATAAGGTGCAGCT AAAAA AGC-GCACCTTATTTTAA TATAAAAGACTATTA TERM 1612 1214723 - 1214696 - f 100 -9.3 -5.07011 | gap 1, opp_overlap 1214696, overlap 1214690 GATATAAAGTAAAAA TAAGGTGCAGCT AAAAA AGC-GCACCTTA TTTTAATATAAAAGA TERM 1613 1214696 - 1214723 + F 89 -9.3 -4.34402 | gap 1, opp_overlap 1214696 1214690 GATATAAAGTAAAAA TAAGGTGCAGCT AAAAA AGC-GCACCTTA TTTTAATATAAAAGA pilT 1214852 - 1215883 + | twitching motility protein PilT TERM 1614 1216016 - 1216030 + G 73 -8.6 -3.05844 | opp_overlap 1216016 AGACTTTGGAAGTAA GAAGCT ATC AGCTTC TCTTGCAGTAAAAAA TERM 1615 1216030 - 1216016 - g 75 -8.6 -3.34522 | opp_overlap 1216016 AGACTTTGGAAGTAA GAAGCT ATC AGCTTC TCTTGCAGTAAAAAA ftsA 1215975 - 1217228 + | cell division protein FtsA ftsZ 1217242 - 1218384 + | cell division protein FtsZ TERM 1616 1218420 - 1218447 + F 100 -10 -5.76633 | opp_overlap 1218420 TATATATAATAAAAA GCATGTGAGATT AATT AATCTTGCATGC TTTTTTTGTGTATAC TERM 1617 1218447 - 1218420 - f 78 -5.6 -5.27206 | opp_overlap 1218420 TATATATAATAAAAA GCATGTGAGATT AATT AATCTTGCATGC TTTTTTTGTGTATAC spoIIGA 1218688 - 1219488 + | sigma-E processing peptidase spoiiga sigE 1219501 - 1220208 + | RNA polymerase sigma-E factor TERM 1618 1220389 - 1220368 - g 77 -5.3 -5.11881 | AAAGAAAAAAAACAA CTTCTTTTA GCAT TAAAAAAAG GAGATTTAAGTGCTA sigG 1220290 - 1221063 + | RNA polymerase sigma-G factor TERM 1619 1221121 - 1221079 - f 100 -15.4 -2.67477 | opp_overlap 1221090, overlap 1221081 1221090 AATTAATCCATATGA TATAATAAAAACTGATATTT AAT AAATATCAGTTTTTGTTATA TAAGGAATTAAGTAA TERM 1620 1221119 - 1221081 - f 93 -13.6 -2.87522 | opp_overlap 1221090, overlap 1221079 1221090 TTAATCCATATGATA TAATAAAAACTGATATTT AAT AAATATCAGTTTTTGTTA TATAAGGAATTAAGT TERM 1621 1221110 - 1221090 - f 100 -9.9 -5.25699 | opp_overlap 1221090, overlap 1221081 1221079 ATGATATAATAAAAA CTGATATTT AAT AAATATCAG TTTTTGTTATATAAG TERM 1622 1221090 - 1221110 + F 100 -9.9 -5.24796 | opp_overlap 1221081 1221079 1221090 ATGATATAATAAAAA CTGATATTT AAT AAATATCAG TTTTTGTTATATAAG CLL_A1192 1221343 - 1221615 + | PRC-barrel domain protein nrdR 1221685 - 1222137 + | transcriptional regulator NrdR CLL_A1194 1222320 - 1223057 + | hypothetical protein CLL_A1195 1223069 - 1223773 + | alkaline phosphatase synthesis transcriptional regulatory proteinphoP CLL_A1196 1223773 - 1225461 + | two-component sensor histidine kinase TERM 1623 1225466 - 1225503 + F 100 -10.2 -4.59984 | opp_overlap 1225455 1225471 1225474, overlap 1225471 AATATAAATAATTAT TTAAATAAGCTGAAAA TTTTAT TTTTCAGCTTATTTTA TTTTGTGTAAATTTT TERM 1624 1225471 - 1225498 + F 100 -10.1 -5.23292 | opp_overlap 1225471 1225474, overlap 1225466 AAATAATTATTTAAA TAAGCTGAAAA TTTTAT TTTTCAGCTTA TTTTATTTTGTGTAA TERM 1625 1225498 - 1225471 - f 90 -10.1 -3.74658 | opp_overlap 1225471 1225466, overlap 1225474 AAATAATTATTTAAA TAAGCTGAAAA TTTTAT TTTTCAGCTTA TTTTATTTTGTGTAA TERM 1626 1225495 - 1225474 - f 71 -7.4 -3.98745 | opp_overlap 1225471 1225466, overlap 1225471 TAATTATTTAAATAA GCTGAAAA TTTTAT TTTTCAGC TTATTTTATTTTGTG CLL_A1197 1225700 - 1226593 + | periplasmic phosphate-binding protein pstC 1226615 - 1227505 + | phosphate ABC transporter, permease protein PstC pstA 1227505 - 1228389 + | phosphate ABC transporter, permease protein PstA pstB 1228403 - 1229152 + | phosphate ABC transporter, ATP-binding protein phoU 1229171 - 1229827 + | phosphate transport system regulatory protein PhoU TERM 1627 1229836 - 1229870 + F 80 -9.5 -3.14211 | opp_overlap 1229836 1229835 1229840, overlap 1229840 TGAATAAAAATAAAG TGAAGGCTAGGAA ATGAAATTA TTCCTAGCCTTTA TTAATAAAAAAACAT TERM 1628 1229866 - 1229840 - f 74 -8.1 -3.47498 | opp_overlap 1229836 1229840, overlap 1229836 1229835 TAAAAATAAAGTGAA GGCTAGGAA ATGAAATTA TTCCTAGCC TTTATTAATAAAAAA TERM 1629 1229840 - 1229866 + F 80 -8.1 -4.24342 | opp_overlap 1229840 1229836 1229835, overlap 1229836 TAAAAATAAAGTGAA GGCTAGGAA ATGAAATTA TTCCTAGCC TTTATTAATAAAAAA TERM 1630 1231175 - 1231159 - g 84 -6.7 -5.13016 | opp_overlap 1231159 AATTAAAAGGAAAAA TAAATAC TAA GTATTTA TTAATGGCTGATTGT CLL_A1202 1230021 - 1231355 + | Fe-S oxidoreductase TERM 1631 1232411 - 1232393 - g 89 -7.6 -5.12617 | GAATTAGCTAAAAAA TGTTATAA CAA TTATAACA AGAGAGTATCTACAG engA 1231355 - 1232671 + | ribosome-associated GTPase EngA CLL_A1204 1232674 - 1233666 + | NAD-dependent glycerol-3-phosphate dehydrogenase family protein spoIVA 1233815 - 1235293 + | stage IV sporulation protein A TERM 1632 1235354 - 1235311 - f 90 -9.9 -3.75105 | opp_overlap 1235318, overlap 1235318 TTAAGGGATTAATAA TTTAAAAGGAGTTTAAAGA AAAATA TCTTTGAACTCCTTTTTAA TACATATTAATAAAC TERM 1633 1235347 - 1235318 - f 78 -8 -4.36729 | opp_overlap 1235318, overlap 1235311 ATTAATAATTTAAAA GGAGTTTAAAGA AAAATA TCTTTGAACTCC TTTTTAATACATATT TERM 1634 1235318 - 1235347 + F 100 -10.2 -4.76644 | opp_overlap 1235311 1235318 ATTAATAATTTAAAA GGAGTTTAAAGA AAAATA TCTTTGAACTCC TTTTTAATACATATT CLL_A1206 1235453 - 1235875 + | putative plasmid-related protein TERM 1635 1235965 - 1235926 - f 87 -6.6 -5.32699 | opp_overlap 1235935, overlap 1235929 1235935 1235954 1235957 TTAAACATTAAAAAA TAATTTAAATACTCTTGG AATT CCAAGAGTATTTTTATGA TAAAAATAAAAAAAT TERM 1636 1235962 - 1235929 - f 85 -8.3 -4.71318 | opp_overlap 1235935, overlap 1235926 1235935 1235954 1235957 AACATTAAAAAATAA TTTAAATACTCTTGG AATT CCAAGAGTATTTTTA TGATAAAAATAAAAA TERM 1637 1235935 - 1235956 + F 100 -11.7 -4.91109 | opp_overlap 1235929 1235926 1235935 1235954 AAAAAATAATTTAAA TACTCTTGG AATT CCAAGAGTA TTTTTATGATAAAAA TERM 1638 1235956 - 1235935 - f 100 -11.7 -3.96481 | opp_overlap 1235935, overlap 1235929 1235926 1235954 AAAAAATAATTTAAA TACTCTTGG AATT CCAAGAGTA TTTTTATGATAAAAA TERM 1639 1235996 - 1235980 - f 82 -2.4 -6.23317 | opp_overlap 1235985 1235993 1235995, overlap 1235985 1235995 ATAAAAATAAAAAAA TATAAT TATAT ATTATA ATGTAATTATGTTTA ansA 1236028 - 1237017 + | L-asparaginase, type II TERM 1640 1237245 - 1237278 + F 79 -4 -5.65927 | gap 1 CTTATTAATAATTAA GTCGCTATGAGTTAT CAAAT AAAAC-CATAGTGAC TTTTTTATTTGAATA CLL_A1208 1237311 - 1238678 + | inner membrane protein YicO TERM 1641 1238749 - 1238788 + F 100 -16.8 -4.59212 | opp_overlap 1238749 AGGGAATAATAAAAA GTATGCCTCTAATATTTG GTAT TGAATATTAGAGGCATAC TTTCTTTAATTAATT TERM 1642 1238788 - 1238749 - f 100 -15.4 -5.30348 | opp_overlap 1238749 AGGGAATAATAAAAA GTATGCCTCTAATATT TGGTATTG AATATTAGAGGCATAC TTTCTTTAATTAATT TERM 1643 1238943 - 1238905 - f 93 -13.6 -2.92142 | opp_overlap 1238912, overlap 1238902 1238907 1238912 AAGAAAAATAGAGGA GAGTTAATAATTTATATT TTA AATTTAAATTATTAACTC AGAAAAAATAACTAT TERM 1644 1238941 - 1238907 - f 85 -10.4 -2.98666 | opp_overlap 1238912, overlap 1238905 1238902 1238912 GAAAAATAGAGGAGA GTTAATAATTTATATT TTA AATTTAAATTATTAAC TCAGAAAAAATAACT TERM 1645 1239266 - 1239255 - g 73 -3 -5.55769 | opp_overlap 1239255 CTCTAGAAGAAAAAA TTAG AGGA CTAA TTAATAGTAAACTAA CLL_A1209 1239107 - 1239988 + | hypothetical protein CLL_A1210 1240002 - 1240271 + | protein YlzA TERM 1646 1240381 - 1240363 - g 79 -4.7 -5.44721 | opp_overlap 1240363 ATTACTTGAAAAAAA TGATAAT TTATT ATTATCA GTTTCAGCAACAACT gmk 1240271 - 1240909 + | guanylate kinase rpoZ 1240890 - 1241090 + | DNA-directed RNA polymerase, omega subunit TERM 1647 1241235 - 1241225 - g 70 -5.4 -4.58466 | opp_overlap 1241225, overlap 1241220 GTTATAATGACAAAA TCAG CTA CTGA ATTTGTTACACCACT TERM 1648 1242063 - 1242049 - g 74 -2.8 -5.63236 | opp_overlap 1242049 ACGCAAAAAGAAAAA CCAAAT TTT AGTTGG ATTTGCTGCTGAAAG coaBC 1241111 - 1242289 + | phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase TERM 1649 1242279 - 1242299 + F 100 -11.2 -4.02817 | opp_overlap 1242283, overlap 1242283 TATTTGATATTATTG GAAAGCGC TAAAT GCGCTTTC TTCTTATTATACAAG TERM 1650 1242283 - 1242295 + F 74 -6.2 -4.60292 | opp_overlap 1242283, overlap 1242279 TGATATTATTGGAAA GCGC TAAAT GCGC TTTCTTCTTATTATA TERM 1651 1242846 - 1242833 - g 71 -3.9 -5.011 | AGTGAAATAACAAAA GAAAA TGGA TTTTC AAGTTATTCTTTAAA TERM 1652 1244195 - 1244205 + G 76 -4 -5.52384 | CATGCCAAAAATGCT GATT ATA AATC TTTTTTTGATGAAGA priA 1242353 - 1244554 + | primosomal protein N' def 1244567 - 1245010 + | peptide deformylase fmt 1245024 - 1245953 + | methionyl-tRNA formyltransferase CLL_A1217 1245994 - 1246671 + | conserved protein YugP sun 1246689 - 1248005 + | ribosomal RNA small subunit methyltransferase B TERM 1653 1248448 - 1248434 - g 71 -8.6 -2.85297 | overlap 1248431 1248445 TTAGCTCAAATATTA GTGGTT CAA AACCAC ATAGGTGAGAGAATT CLL_A1219 1248020 - 1249063 + | radical SAM enzyme, Cfr family TERM 1654 1249627 - 1249593 - g 81 -10.4 -2.62396 | opp_overlap 1249590 1249598, overlap 1249596 GATGTTTTTACATTA GAACATAATAAATA TGATGAG TATTTATTATGTTC AGATGGATTAACAAA CLL_A1220 1249065 - 1249784 + | protein phosphatase PrpC CLL_A1221 1249786 - 1251729 + | serine/threonine-protein kinase PrkC TERM 1655 1251731 - 1251782 + F 93 -12.1 -3.28189 | opp_overlap 1251730 1251736 1251738, overlap 1251738 1251741 CAAAGGTAGAATAAT TAAGAGACTGTCTTAAAAAGTAA TTTAAT TTACTTTTTAAGATGGTTTTTTA TAGTTTCTTTATTTA TERM 1656 1251738 - 1251775 + F 100 -10.2 -5.43621 | opp_overlap 1251730 1251736 1251738, overlap 1251731 1251741 AGAATAATTAAGAGA CTGTCTTAAAAAGTAA TTTAAT TTACTTTTTAAGATGG TTTTTTATAGTTTCT TERM 1657 1251741 - 1251772 + F 90 -10.5 -3.47311 | opp_overlap 1251730 1251738 1251736, overlap 1251738 1251731 ATAATTAAGAGACTG TCTTAAAAAGTAA TTTAAT TTACTTTTTAAGA TGGTTTTTTATAGTT TERM 1658 1252076 - 1252092 + G 70 -5.2 -4.58303 | CTTAGACCAGCTGTA GCTAAT ATTTC ATTAGC TTTTGTGGTATTTGC rsgA 1251869 - 1252741 + | ribosome small subunit-dependent GTPase A rpe 1252735 - 1253379 + | ribulose-phosphate 3-epimerase CLL_A1224 1253388 - 1254026 + | thiamine pyrophosphokinase TERM 1659 1254274 - 1254253 - T 86 -3.9 -6.12458 | gap 1, opp_overlap 1254253 TAAAAAAATAAAAAA TGCAATTCAT ATC AT-AATTGCA TTTTTTATTTGAACT TERM 1660 1254253 - 1254274 + T 79 -3.9 -5.64421 | gap 1, opp_overlap 1254253 TAAAAAAATAAAAAA TGCAATTCAT ATC AT-AATTGCA TTTTTTATTTGAACT rpmB 1254479 - 1254288 - | ribosomal protein L28 CLL_A1226 1254677 - 1255027 + | hypothetical protein TERM 1661 1256278 - 1256295 + G 70 -8.5 -2.7218 | opp_overlap 1256278, overlap 1256277 TAATTCCTACAACAA CTATTCC ACAA GGAATAG CTTGTATAACTATGT TERM 1662 1256295 - 1256278 - g 78 -8.5 -3.8062 | opp_overlap 1256278 1256277 TAATTCCTACAACAA CTATTCC ACAA GGAATAG CTTGTATAACTATGT CLL_A1227 1255041 - 1256687 + | DAK2 domain protein TERM 1663 1256732 - 1256717 - f 78 -6.1 -4.96646 | opp_overlap 1256717, overlap 1256707 1256711 TTATACAATTAAAAA GCACC TTAATT GGTGC TTTTTTTGGAGGAAA TERM 1664 1256717 - 1256732 + F 83 -6.1 -5.40072 | opp_overlap 1256707 1256711 1256717 TTATACAATTAAAAA GCACC TTAATT GGTGC TTTTTTTGGAGGAAA TERM 1665 1258760 - 1258750 - g 74 -4 -5.22039 | GTGAAATGCAAAAAA GTTT GGA AAAC AATAGTAAATACATT recG 1256754 - 1258787 + | ATP-dependent DNA helicase RecG rsmD 1258850 - 1259407 + | RNA methyltransferase, RsmD family coaD 1259410 - 1259889 + | pantetheine-phosphate adenylyltransferase TERM 1666 1260249 - 1260214 - g 95 -10.7 -4.39277 | TAAGAGCACAAGAAA TTATAGCTTCAGCAC AAAGAG ATGCTAAAGCTATAA GATTAGGTTCTAGAG CLL_A1232 1259901 - 1260443 + | archaeal/vacuolar-type H+-ATPase subunit H ylbJ 1261598 - 1260423 - | sporulation integral membrane protein YlbJ TERM 1667 1260821 - 1260807 - G 81 -7.2 -4.73633 | opp_overlap 1260807 TAAGAATATAGAAAA CAAAGT ACC ACTTTG TATATGAAGTAAATT TERM 1668 1260998 - 1261032 + g 100 -8.8 -6.44931 | AATTTTTTTCATTTA TAGAACTTTTAGAAGA CGG TTTTCTTAAGGTTCTA TTTTTTTTTGTTATT TERM 1669 1261623 - 1261651 + r 74 -9 -3.05963 | opp_overlap 1261622 1261619 CCAATTTTAAAGATT TATACGAGAGTA AAATA TACTCTCGTAAA TCTTAGAATAGAAAT CLL_A1233 1263000 - 1261804 - | protein YlbM TERM 1670 1263324 - 1263308 - g 74 -5.1 -5.10497 | overlap 1263310 AACTTATGGAAAAAA TGTGGCT TAG AGCCAAA TCAGATAAGAAGAAT TERM 1671 1263554 - 1263537 - g 71 -2.8 -5.38951 | overlap 1263520 1263516 1263517 AATTTATATAAAAAA TTTCTA CGAACT TAGAAA AAATAAAGGAATGAC pta 1263289 - 1264287 + | phosphate acetyltransferase ackA 1264313 - 1265509 + | acetate kinase TERM 1672 1265829 - 1265807 - g 70 -6.4 -4.0802 | opp_overlap 1265813, overlap 1265808 ATTGTAATAATGAAA GCTAAAGTAA AGG TTACTTTAGA AATGAATTGTGCAAG TERM 1673 1265828 - 1265808 - g 81 -9.9 -3.04089 | opp_overlap 1265813, overlap 1265807 TTGTAATAATGAAAG CTAAAGTAA AGG TTACTTTAG AAATGAATTGTGCAA CLL_A1236 1265639 - 1266145 + | hypothetical protein rpmF 1266148 - 1266330 + | ribosomal protein L32 TERM 1674 1266328 - 1266355 + F 100 -13 -5.09762 | opp_overlap 1266328 1266333, overlap 1266333 GTATCTTCAGAAAAA TAAAAGAAAGTC TTTA GACTTTCTTTTA TTTTTATATTAGAAT TERM 1675 1266355 - 1266328 - f 100 -13 -4.84359 | opp_overlap 1266328 1266333, overlap 1266333 GTATCTTCAGAAAAA TAAAAGAAAGTC TTTA GACTTTCTTTTA TTTTTATATTAGAAT TERM 1676 1266350 - 1266333 - f 100 -8.5 -5.35224 | opp_overlap 1266333 1266328, overlap 1266328 TTCAGAAAAATAAAA GAAAGTC TTTA GACTTTC TTTTATTTTTATATT TERM 1677 1266333 - 1266350 + F 100 -8.5 -5.40873 | opp_overlap 1266328 1266333, overlap 1266328 TTCAGAAAAATAAAA GAAAGTC TTTA GACTTTC TTTTATTTTTATATT TERM 1678 1266423 - 1266466 + F 100 -8.6 -5.75599 | TAATTAAAAATGCTT TAGATTAATTAAATTTATTA TTAT TAATATTTTTAATTAATCTA TTTTTTTATAATTTA TERM 1679 1267353 - 1267363 + G 84 -6.8 -5.03314 | opp_overlap 1267353 1267352 GATTATAAAGAATAT GGTG GAG CACC TTTTTTAGGGGTAAA plsX 1266507 - 1267508 + | fatty acid/phospholipid synthesis protein PlsX acpP 1267597 - 1267827 + | acyl carrier protein TERM 1680 1267850 - 1267833 - f 78 -8.4 -3.85505 | opp_overlap 1267833 CGATGAATAACATAA TCCCGC GAGTAA GCGGGA TTTTCTTTATAACTA TERM 1681 1267833 - 1267850 + F 91 -8.4 -5.0065 | opp_overlap 1267833 CGATGAATAACATAA TCCCGC GAGTAA GCGGGA TTTTCTTTATAACTA rnc 1267946 - 1268644 + | ribonuclease III CLL_A1241 1268637 - 1269659 + | oxygen-independent coproporphyrinogen III oxidase TERM 1682 1269676 - 1269659 - f 83 -11.3 -2.72954 | opp_overlap 1269659, overlap 1269656 1269654 TAACATTATATATTA GCGAGAG GAAA CTCTCGC TTTTATTCTGTAAGT TERM 1683 1269659 - 1269676 + F 100 -11.3 -4.84914 | opp_overlap 1269656 1269654 1269659 TAACATTATATATTA GCGAGAG GAAA CTCTCGC TTTTATTCTGTAAGT TERM 1684 1269690 - 1269710 + F 78 -6.3 -4.98531 | overlap 1269702 GCTTTTATTCTGTAA GTTTTTTTA AAA TAAGAAAAC TTTTTAATTTCGGAA smc 1269948 - 1273505 + | chromosome segregation protein SMC ftsY 1273699 - 1274607 + | signal recognition particle-docking protein FtsY TERM 1685 1274767 - 1274734 - f 95 -4.7 -6.4275 | opp_overlap 1274738, overlap 1274739 GAAAAATAAAAAAAA TATGACTGTTAAGTA AAAA TACTTGACAGCTATA TAAAATCCTGTTAAA CLL_A1244 1274809 - 1275138 + | DNA-binding protein TERM 1686 1276455 - 1276445 - g 84 -4 -5.89827 | AATGATGAAAAAAAA TATG AGG CATA TGAAGTCGCTTCAAA ffh 1275153 - 1276511 + | signal recognition particle protein rpsP 1276546 - 1276791 + | ribosomal protein S16 CLL_A1247 1276841 - 1277068 + | hypothetical protein TERM 1687 1277097 - 1277076 - f 93 -8.8 -4.89063 | opp_overlap 1277076 TCATTTAAAAATAAA GAGTTAGG GTTACA CCTAACTC TTTTTAAATATTTAA TERM 1688 1277076 - 1277097 + F 93 -8.8 -4.77986 | opp_overlap 1277076 TCATTTAAAAATAAA GAGTTAGG GTTACA CCTAACTC TTTTTAAATATTTAA TERM 1689 1277404 - 1277384 - g 74 -9.1 -2.9547 | opp_overlap 1277388, overlap 1277395 AAATATATTGAGATA TTTAGAAGC AAT GCTCCTAAA TTAGAGGCAGACACT rimM 1277144 - 1277641 + | 16S rRNA processing protein RimM TERM 1690 1278308 - 1278296 - g 72 -4.9 -4.99035 | TGATTTATATAAAAA TGTTA TTC TAACA AAAGAAGATAAAAAA trmD 1277631 - 1278347 + | tRNA (guanine-N1)-methyltransferase rplS 1278471 - 1278821 + | ribosomal protein L19 TERM 1691 1278852 - 1278834 - f 75 -8.8 -3.22849 | opp_overlap 1278834 1278836, overlap 1278833 TAATTAGATTAAAAG GTGGACTG ATT CAGTCCTC TTTTTTTCTATAATA TERM 1692 1278834 - 1278852 + F 100 -8.8 -5.74122 | opp_overlap 1278833 1278834, overlap 1278836 TAATTAGATTAAAAG GTGGACTG ATT CAGTCCTC TTTTTTTCTATAATA TERM 1693 1278836 - 1278850 + F 100 -10 -4.50122 | opp_overlap 1278834 1278833, overlap 1278834 ATTAGATTAAAAGGT GGACTG ATT CAGTCC TCTTTTTTTCTATAA TERM 1694 1278877 - 1278890 + F 83 -6.7 -5.16132 | opp_overlap 1278877 1278880 1278881 ATAATAAATTAATTA GAAGC TTAA GCTTC TTTTCTTTTAATATA TERM 1695 1278924 - 1278880 - f 75 -8.1 -3.59516 | opp_overlap 1278877, overlap 1278877 1278881 ATAAATTAATTAGAA GCTTAAGCTTCTTTTCTTTTA ATA TAGAAAAAAAGAAGCGTAAGG AGGAAATGAAATGGC TERM 1696 1278923 - 1278881 - f 86 -11.6 -2.74625 | opp_overlap 1278877, overlap 1278877 1278880 TAAATTAATTAGAAG CTTAAGCTTCTTTTCTTTTA ATA TAGAAAAAAAGAAGCGTAAG GAGGAAATGAAATGG CLL_A1251 1278935 - 1279792 + | GTP-binding protein CLL_A1252 1279785 - 1280600 + | ribonuclease HII TERM 1697 1280641 - 1280605 - T 100 -15.6 -4.38273 | opp_overlap 1280605 ATATATTATAACAAA TACCTTGTAAAATAAT GGGGA ATTATTTTACAAGGTA TTTTTAAGTTCTAAA TERM 1698 1280605 - 1280641 + T 100 -15.6 -4.78149 | opp_overlap 1280605 ATATATTATAACAAA TACCTTGTAAAATAAT GGGGA ATTATTTTACAAGGTA TTTTTAAGTTCTAAA CLL_A1253 1281013 - 1280645 - | endonuclease TERM 1699 1282077 - 1282092 + G 77 -5.4 -5.1356 | opp_overlap 1282072 1282077 GGAGAAGTAACATTA GCACAT AATG GTGTGC TTTTTCTTGATGAGG CLL_A1254 1281195 - 1282715 + | putative Mg chelatase homolog dprA 1282735 - 1283793 + | DNA uptake protein TERM 1700 1283815 - 1283836 + F 77 -8.9 -3.39803 | TTTAGGGGGTGAGTA CTTCATAAA ATTT TTTATGAAG TTATAAATATGGGTC TERM 1701 1285355 - 1285335 - g 71 -2.5 -5.45802 | opp_overlap 1285335 1285334, overlap 1285340 TCGTGAAAAGAAAAA CTTAATTCC AAC GGAATTGGG ATTTATAGTGAATAA topA 1283845 - 1285932 + | DNA topoisomerase I codY 1286126 - 1286902 + | GTP-sensing transcriptional pleiotropic repressor CodY TERM 1702 1286910 - 1286895 - f 80 -3.4 -5.96521 | opp_overlap 1286895, overlap 1286903 ATGAATTAAAAAAAA TAAAAT AGTA ATTTTA TTTCAAAATTAGACG TERM 1703 1286931 - 1286969 + F 100 -17.8 -4.56597 | opp_overlap 1286935, overlap 1286935 1286966 AAATTAGACGAGCTA TAAATAGGAGAAACCGAG AAA TTTGGTTTCTCCTATTTA TTTTTAGAGAAAAAG TERM 1704 1286965 - 1286935 - f 100 -11.3 -3.94409 | opp_overlap 1286931 1286935 TAGACGAGCTATAAA TAGGAGAAACCGA GAAAT TTGGTTTCTCCTA TTTATTTTTAGAGAA TERM 1705 1286935 - 1286965 + F 100 -14.2 -4.85782 | opp_overlap 1286935, overlap 1286931 TAGACGAGCTATAAA TAGGAGAAACCGAG AAA TTTGGTTTCTCCTA TTTATTTTTAGAGAA TERM 1706 1286966 - 1286988 + F 70 -2.9 -5.5112 | overlap 1286931 ATTTGGTTTCTCCTA TTTATTTTT AGAGA AAAAGTAAA TTTTTTGTTGATAGG TERM 1707 1287590 - 1287574 - g 84 -3.7 -5.77632 | AAAATTAGAAAAAAA TCTTGGT GGT ATCAAGA ACTTAGATTGCGACA rpsB 1287134 - 1287835 + | ribosomal protein S2 TERM 1708 1287857 - 1287884 + F 100 -14.4 -2.52464 | opp_overlap 1287857 1287860, overlap 1287860 1287862 1287875 TATACTATTTTAATA GAAGACAAAACA ATTT TGTTTTGTCTTC TAACTTAGAAGGCAC TERM 1709 1287884 - 1287857 - f 100 -14.4 -3.0752 | opp_overlap 1287857 1287860 1287862 1287875, overlap 1287860 TATACTATTTTAATA GAAGACAAAACA ATTT TGTTTTGTCTTC TAACTTAGAAGGCAC TERM 1710 1287860 - 1287881 + F 90 -10.3 -3.41878 | opp_overlap 1287857 1287860, overlap 1287857 1287862 1287875 ACTATTTTAATAGAA GACAAAACA ATTT TGTTTTGTC TTCTAACTTAGAAGG TERM 1711 1287881 - 1287860 - f 91 -10.3 -3.67878 | opp_overlap 1287860 1287857 1287862 1287875, overlap 1287857 ACTATTTTAATAGAA GACAAAACA ATTT TGTTTTGTC TTCTAACTTAGAAGG TERM 1712 1287862 - 1287874 + F 70 -4.9 -4.74285 | opp_overlap 1287860 1287857, overlap 1287860 1287857 TATTTTAATAGAAGA CAAAA CAA TTTTG TTTTGTCTTCTAACT TERM 1713 1287875 - 1287901 + F 71 -7.4 -3.98804 | opp_overlap 1287860 1287857, overlap 1287860 1287857 GACAAAACAATTTTG TTTTGTCTTCTA ACT TAGAAGGCACAA TTATTTGAAATTTAA TERM 1714 1287902 - 1287940 + F 80 -8.6 -4.35091 | ACTTAGAAGGCACAA TTATTTGAAATTTAATAT TTT ATGTTAAGTTTTAAATAA TTTCTTCTAAATATT TERM 1715 1288829 - 1288819 - g 72 -6.8 -4.10717 | GAAAAAGCTAAAGAA GCAG GTT CTGC AATCAAAGTAAATAG tsf 1288018 - 1288929 + | translation elongation factor Ts TERM 1716 1288966 - 1288948 - f 77 -7.4 -4.40526 | opp_overlap 1288948, overlap 1288943 TATATAAAAACTAAA GAGGACAC TCT GTGTTCTC TTTTTTTAAAGAAAA TERM 1717 1288948 - 1288966 + F 100 -9.6 -5.40072 | opp_overlap 1288948 1288943 TATATAAAAACTAAA GAGGACAC TCT GTGTTCTC TTTTTTTAAAGAAAA TERM 1718 1289588 - 1289572 - g 100 -6.7 -5.68023 | opp_overlap 1289574 CCAGAAGCAAAAAAA TATGATA CAC TATCATA TATAGATGTTTTAGA pyrH 1289038 - 1289751 + | UMP kinase frr 1289762 - 1290319 + | ribosome recycling factor TERM 1719 1290343 - 1290328 - f 84 -9 -4.19953 | opp_overlap 1290328 TATTTAATCTCAAAA CCTGCT ATTT AGCAGG TTTTTTTCCTTAATT TERM 1720 1290328 - 1290343 + F 100 -9 -5.66868 | opp_overlap 1290328 TATTTAATCTCAAAA CCTGCT ATTT AGCAGG TTTTTTTCCTTAATT uppS 1290420 - 1291178 + | di-trans,poly-cis-decaprenylcistransferase cdsA 1291193 - 1291987 + | phosphatidate cytidylyltransferase TERM 1721 1292002 - 1292030 + F 100 -10.5 -6.17268 | opp_overlap 1292002 ATATTTATTAAGAAA TCTGTAGATTTAA ATT TTAAATCTGCGGA TTTTTTTTGTTGTAA TERM 1722 1292030 - 1292002 - f 70 -6.1 -4.26202 | opp_overlap 1292002 ATATTTATTAAGAAA TCTGTAGATTTAA ATT TTAAATCTGCGGA TTTTTTTTGTTGTAA CLL_A1264 1292205 - 1293215 + | hypothetical protein TERM 1723 1294119 - 1294108 - g 81 -3 -5.76237 | TACAGAAAGAAAAAA TTTG ATAG CAAA AACATTAGATTTTTA dxr 1293266 - 1294423 + | 1-deoxy-D-xylulose 5-phosphate reductoisomerase TERM 1724 1294463 - 1294473 + G 70 -5.4 -4.56729 | overlap 1294446 GTAGCTATACTAGGT GCTA TTT TAGC TTTTAGTGTTTTAAT TERM 1725 1294708 - 1294694 - g 72 -5 -4.83169 | opp_overlap 1294677, overlap 1294677 AGTTTTTCAGAAAAA TCTCCT CTT AGAAGA ATAAGCATTATAATA rseP 1294439 - 1295458 + | RIP metalloprotease RseP ispG 1295470 - 1296519 + | 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase TERM 1726 1296581 - 1296602 + F 95 -9.5 -4.78326 | opp_overlap 1296581 1296579 AATATAAAAGAACTA TAGGGGGAT GAGA ATCCCTCTA TTTATTTCTTTAGAA TERM 1727 1297181 - 1297169 - g 72 -3.5 -5.22104 | TAAAAAAGAAGAAAA TATTA AAA TAATA AAAGAAGTAATGAAT polC 1296624 - 1300982 + | DNA polymerase III, alpha subunit, Gram-positive type TERM 1728 1301132 - 1301151 + F 77 -7.1 -4.40003 | TAGGCTATAAAAGTG GAGTGGG AAATTA CCCGCTC TTTCTATTTGTAACG TERM 1729 1301165 - 1301188 + F 80 -6.8 -4.95876 | overlap 1301185 TCTTTCTATTTGTAA CGCAACTA CTTTAATA TAGTTGCG TTTTTGATTATGATT CLL_A1269 1301266 - 1301727 + | hypothetical protein nusA 1301745 - 1302899 + | transcription termination factor NusA CLL_A1271 1302914 - 1303180 + | hypothetical protein CLL_A1272 1303173 - 1303493 + | ribosomal protein, L7Ae family TERM 1730 1303562 - 1303546 - g 81 -8.1 -4.36411 | TACGAATTAGCAAAA GAACTTA ATG TAAGTTC AAAAGATTTAATAAC infB 1303513 - 1305576 + | translation initiation factor IF-2 rbfA 1305590 - 1305940 + | ribosome-binding factor A TERM 1731 1306091 - 1306115 + G 91 -10.1 -4.29621 | opp_overlap 1306093 1306095 CTTATATTATTTCAA GAGATGTTATC CAA GATAACCTCTC TTTCCTTTCTTTATC CLL_A1275 1305940 - 1306917 + | DHH subfamily 1 protein truB 1306914 - 1307789 + | tRNA pseudouridine synthase B ribF 1307806 - 1308732 + | riboflavin biosynthesis protein RibF rpsO 1308849 - 1309112 + | ribosomal protein S15 TERM 1732 1309117 - 1309137 + F 100 -14.1 -4.17316 | opp_overlap 1309114 1309113 TAAGAAGATAATTTT TAGAGCGGA TCT TCCGCTCTA TTATTTTAAAAAAAT TERM 1733 1311034 - 1311021 - g 74 -3.9 -5.23396 | AAGAAGCAATAAAAA TAATC GAAG GATTA ACTAAAGATGTTAAA CLL_A1279 1309193 - 1311307 + | polyribonucleotide nucleotidyltransferase TERM 1734 1311329 - 1311305 - f 76 -4.3 -5.44198 | opp_overlap 1311310, overlap 1311309 1311310 AACAAAGAAGAAAAA TAAAGGGCAAT TAA ATTGCCTTTTT GTTCTTTTTAAATTT TERM 1735 1311325 - 1311309 - f 74 -5.1 -5.11254 | opp_overlap 1311310, overlap 1311305 1311310 AAGAAGAAAAATAAA GGGCAAT TAA ATTGCCT TTTTGTTCTTTTTAA TERM 1736 1311310 - 1311324 + F 100 -8.6 -5.51353 | opp_overlap 1311309 1311305 1311310 AGAAGAAAAATAAAG GGCAAT TAA ATTGCC TTTTTGTTCTTTTTA TERM 1737 1311324 - 1311310 - f 75 -8.6 -3.63092 | opp_overlap 1311310, overlap 1311309 1311305 AGAAGAAAAATAAAG GGCAAT TAA ATTGCC TTTTTGTTCTTTTTA TERM 1738 1311397 - 1311386 - f 73 -5.8 -4.73864 | opp_overlap 1311386, overlap 1311381 GTAATGAATATAAAA TCGC TTTG GCGA TTTTTTTATTATAAT TERM 1739 1311386 - 1311397 + F 90 -5.8 -5.89921 | opp_overlap 1311386 1311381 GTAATGAATATAAAA TCGC TTTG GCGA TTTTTTTATTATAAT TERM 1740 1312096 - 1312068 - g 72 -6.3 -4.26019 | opp_overlap 1312067 1312068 GAACTATACCTAAAA TAAAATCTTTT ACTAGAG AAAAGATTTTA AATTTTATATCAGAA CLL_A1280 1311581 - 1312888 + | peptidase, M16 family CLL_A1281 1312957 - 1313238 + | PRC-barrel domain protein TERM 1741 1313467 - 1313457 - g 75 -5.4 -4.88485 | CAAGCAAAAAAAGAA GGAT ATA ATCC AGTTGTAGTTGTTTC CLL_A1282 1313361 - 1314560 + | aspartokinase 1 TERM 1742 1314620 - 1314582 - f 72 -7.5 -3.5361 | opp_overlap 1314583, overlap 1314583 1314585 TAAGTATGTATATAA TCATTCCTTCCGTACAA AATAA TTGTATGGGAGGAATGT TTTTATGAACAATAT TERM 1743 1314583 - 1314619 + F 100 -15.4 -4.83615 | opp_overlap 1314582 1314583 1314585 AAGTATGTATATAAT CATTCCTTCCGTACAA AATAA TTGTATGGGAGGAATG TTTTTATGAACAATA TERM 1744 1314619 - 1314583 - f 83 -11 -2.71684 | opp_overlap 1314583, overlap 1314582 1314585 AAGTATGTATATAAT CATTCCTTCCGTACAA AATAA TTGTATGGGAGGAATG TTTTTATGAACAATA clpP 1314625 - 1315323 + | Clp protease TERM 1745 1315340 - 1315365 + F 100 -8.4 -5.95286 | opp_overlap 1315340 AACTAATTATTTAAA CAGCTATAGA AAAAAA TCTATGGCTG TTTTTTATTTTTAGT TERM 1746 1316162 - 1316152 - g 74 -2.6 -5.71712 | opp_overlap 1316152 GTGTAGATAAAAAAA TAAA AAT TTTA GATTTTATGAAAAAT ftsK 1315443 - 1317797 + | DNA translocase FtsK/SpoIIIE CLL_A1285 1317899 - 1319239 + | hypothetical protein pgsA 1319223 - 1319813 + | CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase TERM 1747 1319821 - 1319792 - f 71 -6.7 -4.13123 | opp_overlap 1319797, overlap 1319790 TAAGAAAAACAAAGA TTCAATATCTACT AATA AATAGATATTAAA TAGATATGTTTAAAA TERM 1748 1319866 - 1319897 + F 95 -8.2 -5.15167 | TATAATTATAATAAA TTCCTTCTTTAAGA TGCA TTTTAAAGGGGGAA TTTTTATTAATACTG recA 1319982 - 1321052 + | protein RecA TERM 1749 1321091 - 1321070 - f 78 -5.9 -5.02439 | opp_overlap 1321070 ATATAATTATAAAAA GCAAAAGGA GGAT TTCTTTTGC TTTTTTTGACAACAA TERM 1750 1321070 - 1321091 + F 100 -8.1 -5.40072 | opp_overlap 1321070 ATATAATTATAAAAA GCAAAAGGA GGAT TTCTTTTGC TTTTTTTGACAACAA CLL_A1288 1321390 - 1322934 + | hypothetical protein TERM 1751 1322979 - 1322937 - f 93 -8.8 -4.86731 | opp_overlap 1322943 1322976, overlap 1322938 1322943 1322950 CTTTGCTAAATAAAA TTAAAAGATAAAATGTATAA GAA CTATACATTTTATCTTTTTT ATTTATAAAATATTA TERM 1752 1322978 - 1322938 - f 95 -12.3 -3.51557 | opp_overlap 1322943 1322976, overlap 1322937 1322943 1322950 TTTGCTAAATAAAAT TAAAAGATAAAATGTATAA GAA CTATACATTTTATCTTTTT TATTTATAAAATATT TERM 1753 1322973 - 1322943 - f 100 -12.2 -4.81644 | opp_overlap 1322943, overlap 1322938 1322937 1322950 TAAATAAAATTAAAA GATAAAATGTATAA GAA CTATACATTTTATC TTTTTTATTTATAAA TERM 1754 1322943 - 1322973 + F 100 -11.5 -5.72622 | opp_overlap 1322943 1322938 1322937 1322950 TAAATAAAATTAAAA GATAAAATGTATA AGAAC TATACATTTTATC TTTTTTATTTATAAA TERM 1755 1322966 - 1322950 - f 70 -4.5 -4.93333 | opp_overlap 1322943, overlap 1322943 1322938 1322937 AATTAAAAGATAAAA TGTATAA GAA CTATACA TTTTATCTTTTTTAT CLL_A1289 1323082 - 1323342 + | stage V sporulation protein S TERM 1756 1323665 - 1323640 - g 84 -9.1 -3.91084 | overlap 1323656 1323657 TTAGCTGTAACTAAA GATGCTGCAAT AAAA ATTTCAGCATC TGGAGATGATGAAGC CLL_A1290 1323469 - 1323729 + | phosphocarrier, HPr family TERM 1757 1323744 - 1323783 + T 76 -6 -4.87592 | gap 1, opp_overlap 1323744, overlap 1323739 1323737 ATATTTATTAAAAAA GAGATGTC-CCTAAA AGGTATATAAA TTTAGGAGACATCTC TTTTGTTATGTATAA TERM 1758 1323783 - 1323744 - T 80 -6 -5.17353 | gap 1, opp_overlap 1323744 1323739 1323737 ATATTTATTAAAAAA GAGATGTC-CCTAAA AGGTATATAAA TTTAGGAGACATCTC TTTTGTTATGTATAA TERM 1759 1323868 - 1323817 - T 80 -9.2 -3.2302 | opp_overlap 1323818, overlap 1323815 1323818 TCTAATTACAATAGA GTTTTTCCAATAAGCAAATA GAAGAATAATAT TATTTGCTTATTGGAAAAAT ATCATAATAGCTATT TERM 1760 1323818 - 1323867 + T 100 -14.8 -2.83343 | opp_overlap 1323817 1323815 1323818 CTAATTACAATAGAG TTTTTCCAATAAGCAAATAGAA GAATAA TATTATTTGCTTATTGGAAAAA TATCATAATAGCTAT TERM 1761 1323867 - 1323818 - T 89 -12.7 -2.5333 | opp_overlap 1323818, overlap 1323817 1323815 CTAATTACAATAGAG TTTTTCCAATAAGCAAATA GAAGAATAATAT TATTTGCTTATTGGAAAAA TATCATAATAGCTAT CLL_A1291 1324108 - 1323884 - | hypothetical protein purB 1324279 - 1325709 + | adenylosuccinate lyase TERM 1762 1325720 - 1325760 + T 95 -10.7 -3.93256 | opp_overlap 1325722 TTTAAATAATTTGAA TATAGGATATCTTAGTTTT AAT AATTCTAAGGTATCCTATA TTATTTAGAAATCTA CLL_A1293 1326858 - 1325836 - | hypothetical protein TERM 1763 1326290 - 1326278 - G 86 -6.3 -5.22006 | GGATCATAAGAAAAA CTTCT ATC AGAAG TATAAGGTGTTCTGT CLL_A1294 1327109 - 1328317 + | tetratricopeptide repeat domain protein TERM 1764 1328576 - 1328601 + F 100 -10.5 -5.42514 | TAAATTAAATGTGTA CCCTGAACTTA TGTT TTAGTTCAGGG TTTTTTAATTTATAA TERM 1765 1328720 - 1328740 + F 100 -12.7 -6.25741 | AAGATTATTATTATC CCTGAAGTA TTT TACTTCAGG TTTTTTTTATTCTTT ribD 1328884 - 1330020 + | riboflavin biosynthesis protein RibD ribE 1330035 - 1330685 + | riboflavin synthase, alpha subunit CLL_A1297 1330947 - 1332140 + | riboflavin biosynthesis protein ribAB ribH 1332229 - 1332690 + | 6,7-dimethyl-8-ribityllumazine synthase CLL_A1299 1333770 - 1333009 - | DNA-binding protein IolR TERM 1766 1333346 - 1333328 - G 71 -2.4 -5.45802 | CCTGTAAAAGAAAAA GTAGTTCT ATT AAACCTAC CAGATAAACATATTA CLL_A1300 1334003 - 1335157 + | NAD-dependent methanol dehydrogenase TERM 1767 1335395 - 1335379 - g 72 -5.1 -4.95806 | opp_overlap 1335377 1335379 AAAGCAGCAGAAAAA GCTAAAG TAC CTGTAGC TATTCACTTTGACCA CLL_A1301 1335163 - 1336008 + | probable fructose-bisphosphate aldolase 1 CLL_A1302 1336086 - 1337105 + | protein IolC TERM 1768 1337455 - 1337441 - g 75 -5.8 -4.65584 | opp_overlap 1337447 1337450, overlap 1337436 1337447 1337450 ACAAAGCACAGAAAA TCAAAA TGA TTTTGA AGCAAAATTATATTC CLL_A1303 1337121 - 1337912 + | myo-inositol catabolism protein IolB CLL_A1304 1338074 - 1340005 + | probable malonic semialdehyde oxidative decarboxylase CLL_A1305 1340022 - 1341035 + | inositol 2-dehydrogenase TERM 1769 1341833 - 1341821 - g 74 -4.9 -5.18355 | GTTAAAAATGAAAAA TTAAG TTT CTTAA AAGGTGTAAGAGCTG CLL_A1306 1341131 - 1342027 + | inosose dehydratase CLL_A1307 1342145 - 1343737 + | Na+/myo-inositol cotransporter TERM 1770 1343908 - 1343965 + T 100 -17.5 -2.73771 | opp_overlap 1343913 1343917, overlap 1343911 1343913 1343917 TATTTTCATGTGCCT TAAAATAAAGAGGCATGAAATACATCT TTTT AGATAAATTTCATGCCTCTTTATATTA ATTTAAAAAATATAA TERM 1771 1343911 - 1343962 + T 100 -14.8 -3.51708 | opp_overlap 1343913 1343917, overlap 1343908 1343913 1343917 TTTCATGTGCCTTAA AATAAAGAGGCATGAAATACATCT TTTT AGATAAATTTCATGCCTCTTTATA TTAATTTAAAAAATA TERM 1772 1343913 - 1343960 + T 100 -17.4 -3.33151 | opp_overlap 1343913 1343917, overlap 1343911 1343908 1343917 TCATGTGCCTTAAAA TAAAGAGGCATGAAATACATCT TTTT AGATAAATTTCATGCCTCTTTA TATTAATTTAAAAAA TERM 1773 1343960 - 1343913 - T 100 -19.6 -4.08216 | opp_overlap 1343911 1343908 1343913 1343917, overlap 1343917 TCATGTGCCTTAAAA TAAAGAGGCATGAAATACATCT TTTT AGATAAATTTCATGCCTCTTTA TATTAATTTAAAAAA TERM 1774 1343917 - 1343956 + T 100 -13.8 -4.31 | opp_overlap 1343913 1343917, overlap 1343913 1343911 1343908 GTGCCTTAAAATAAA GAGGCATGAAATACATCT TTTT AGATAAATTTCATGCCTC TTTATATTAATTTAA TERM 1775 1343956 - 1343917 - T 100 -16 -4.64861 | opp_overlap 1343917 1343913 1343911 1343908, overlap 1343913 GTGCCTTAAAATAAA GAGGCATGAAATACATCT TTTT AGATAAATTTCATGCCTC TTTATATTAATTTAA CLL_A1308 1344316 - 1344137 - | hypothetical protein TERM 1776 1344577 - 1344535 - H 78 -8.1 -3.95883 | gap 1, opp_overlap 1344522 1344535 1344546, overlap 1344540 CATTATGTAAAAATA TATAATTAATACTCCTACTT GTAG AAGTAGGAGTATTAAC-AGA GTCTATTTTCTGAAT TERM 1777 1344573 - 1344540 - H 100 -17.1 -3.89448 | opp_overlap 1344535 1344546, overlap 1344535 TGTAAAAATATATAA TTAATACTCCTACTT GTAG AAGTAGGAGTATTAA CAGAGTCTATTTTCT TERM 1778 1344546 - 1344567 + H 90 -11.7 -3.02829 | opp_overlap 1344540 1344535, overlap 1344535 AATATATAATTAATA CTCCTACTT GTAG AAGTAGGAG TATTAACAGAGTCTA TERM 1779 1345190 - 1345200 + G 70 -5.4 -4.59773 | GCAAATAGTGGTGAT GCTA TTA TAGC TTTTTCAAACTCAGG CLL_A1309 1344641 - 1345498 + | transcriptional regulator, RpiR family TERM 1780 1345558 - 1345594 + F 100 -7.6 -5.38839 | gap 1, opp_overlap 1345558 1345557 AATAATAAATAAATG GCTATCTCAAATTAATA AATA TATTT-TTTGAGATAGC TTTTGTTTTTATATG gntK 1345833 - 1347356 + | gluconate kinase CLL_A1311 1347381 - 1348697 + | gluconate transporter gnd 1348749 - 1349648 + | 6-phosphogluconate dehydrogenase (decarboxylating) TERM 1781 1349660 - 1349701 + F 100 -9.7 -5.26875 | opp_overlap 1349660 ATAAAAATATATTAA GAGGTTTCACATAATGATT TTTT AATAATTATGTGGGATCTC TTTTTTAATTAAGAA CLL_A1313 1349810 - 1350046 + | hypothetical protein CLL_A1314 1350133 - 1350738 + | nudix-family hydrolase TERM 1782 1350837 - 1350859 + T 100 -15 -5.58522 | opp_overlap 1350837 TAAAATCATAAAAAA TGCAGGAGTT TTT AACTCCTGCA TTTTTATTTTATATA TERM 1783 1350859 - 1350837 - T 100 -15 -5.4588 | opp_overlap 1350837 TAAAATCATAAAAAA TGCAGGAGTT TTT AACTCCTGCA TTTTTATTTTATATA CLL_A1315 1352167 - 1350875 - | xanthine/uracil permease family protein TERM 1784 1352268 - 1352247 - H 100 -7.5 -5.56673 | opp_overlap 1352246 1352260 1352262, overlap 1352262 ATCCATAACAAAAAA TTCAATATA AATG TATATTGAA AATACTTTTTTGGCA TERM 1785 1352840 - 1352854 + H 70 -7.2 -3.70902 | opp_overlap 1352840 TATCTAATGAGTGAA TGTGAT CAA ATCACA TTTAGATATAACAAA CLL_A1316 1353020 - 1353598 + | putative protein of unknown function CLL_A1317 1353724 - 1353864 + | hypothetical protein TERM 1786 1353927 - 1353894 - f 78 -6.9 -4.75288 | opp_overlap 1353897 1353898, overlap 1353897 1353898 GCATATGAAAATAAA GAATGAAGTAATCTA AATT TAGATTACTTCGTTT TTTTATTTGCTTATA TERM 1787 1353897 - 1353924 + F 100 -10.8 -6.01187 | opp_overlap 1353897 1353894 1353898, overlap 1353898 TATGAAAATAAAGAA TGAAGTAATCTA AATT TAGATTACTTCG TTTTTTTATTTGCTT TERM 1788 1353924 - 1353897 - f 82 -8.6 -4.45807 | opp_overlap 1353897 1353898, overlap 1353894 1353898 TATGAAAATAAAGAA TGAAGTAATCTA AATT TAGATTACTTCG TTTTTTTATTTGCTT TERM 1789 1353898 - 1353923 + F 100 -12.1 -4.17052 | opp_overlap 1353897 1353894 1353898, overlap 1353897 ATGAAAATAAAGAAT GAAGTAATCTA AATT TAGATTACTTC GTTTTTTTATTTGCT TERM 1790 1353923 - 1353898 - f 93 -12.1 -3.25857 | opp_overlap 1353898 1353897, overlap 1353897 1353894 ATGAAAATAAAGAAT GAAGTAATCTA AATT TAGATTACTTC GTTTTTTTATTTGCT TERM 1791 1354452 - 1354482 + F 100 -9.9 -5.61596 | overlap 1354442 TACCGCAGAGTTTTT GACTTTGTCTCTA ATTAA TAGAGATAAGGTC TTTTTTTATAAAAAT CLL_A1318 1354537 - 1355610 + | glycerol dehydrogenase CLL_A1319 1355695 - 1356258 + | hypothetical protein CLL_A1320 1356472 - 1356648 + | hypothetical protein TERM 1792 1356671 - 1356708 + T 77 -6.5 -4.61231 | gap 1, opp_overlap 1356666 1356671, overlap 1356684 ACTTAACCAATAAAA GCCTTAGAAT-TTACTTA AAC TAAGTTTTATTCTAAGGC TTTTTAGCAATATAA TERM 1793 1356708 - 1356671 - T 78 -6.5 -4.79174 | gap 1, opp_overlap 1356671 1356684, overlap 1356666 ACTTAACCAATAAAA GCCTTAGAAT-TTACTTA AAC TAAGTTTTATTCTAAGGC TTTTTAGCAATATAA CLL_A1321 1357355 - 1356732 - | hypothetical protein TERM 1794 1356839 - 1356817 - G 73 -4.3 -5.1848 | AACCAACTTAAAAAA GAAAATTTT GTTAT AAAATTTCC AATCAAAATCATTAA leuA 1357698 - 1359371 + | 2-isopropylmalate synthase TERM 1795 1359457 - 1359495 + T 81 -7.7 -4.38114 | gap 1, opp_overlap 1359461, overlap 1359461 TAAAATAACTTTTAA TAAACCTGAAAGAATATC AAAT GGAAT-CTTTCAGGTTTA TTTATTATGAATTTT CLL_A1323 1360263 - 1359613 - | hypothetical protein CLL_A1324 1360577 - 1361434 + | DNA repair exonuclease family protein TERM 1796 1362545 - 1362520 - g 75 -5.5 -4.92777 | opp_overlap 1362524 AACATTAATTAAAAA CACATGGATTG ATGA CAATACATATG TTCAACCTAATGGGG CLL_A1325 1361555 - 1363030 + | cell wall binding repeat protein CLL_A1326 1363273 - 1364304 + | aminopeptidase, M42 family TERM 1797 1364358 - 1364326 - f 100 -12.3 -5.00138 | opp_overlap 1364326 TATTTAAAGTAAAAA GCTGTTTCAAATT AAATAAA AATTTGAAACAGC TTTTTATTATGTAGA TERM 1798 1364326 - 1364358 + F 100 -12.3 -5.24796 | opp_overlap 1364326 TATTTAAAGTAAAAA GCTGTTTCAAATT AAATAAA AATTTGAAACAGC TTTTTATTATGTAGA CLL_A1327 1364648 - 1364878 + | carbon monoxide dehydrogenase subunit CooF TERM 1799 1364882 - 1364913 + T 100 -17.6 -5.96894 | opp_overlap 1364882 TTTTCAATATAAAAA TGGTTAGAACTCTA GAAA TAGAGTTCTAACCA TTTTTTTATTTAAAT TERM 1800 1364913 - 1364882 - T 100 -17.6 -5.0916 | opp_overlap 1364882 TTTTCAATATAAAAA TGGTTAGAACTCTA GAAA TAGAGTTCTAACCA TTTTTTTATTTAAAT CLL_A1328 1366141 - 1365155 - | Fe-S oxidoreductase TERM 1801 1365234 - 1365249 + g 72 -4.8 -4.84529 | opp_overlap 1365232 1365234 TTATTATAAAAACCA TTCTTA TCTA TAAGAA TTTTTGAATTTATAG TERM 1802 1365904 - 1365876 - G 70 -6.3 -4.11027 | opp_overlap 1365885, overlap 1365885 1365897 TTATCAAAAACATAA TCAAAAAAATTTA TAG TAAACTTTTTTAA AAAATTAGAATTTAA TERM 1803 1365895 - 1365885 - G 74 -2.6 -5.69379 | opp_overlap 1365885, overlap 1365876 ACATAATCAAAAAAA TTTA TAG TAAA CTTTTTTAAAAAATT CLL_A1329 1366387 - 1367748 + | mate efflux family protein TERM 1804 1367755 - 1367782 + T 100 -15.8 -5.94214 | opp_overlap 1367755 GAAATATAAAAAAAA GTTGTATCTCGA TTAA TCGAGATACAAC TTTTTTTATTATGTT TERM 1805 1367782 - 1367755 - T 100 -15.8 -6.15717 | opp_overlap 1367755 GAAATATAAAAAAAA GTTGTATCTCGA TTAA TCGAGATACAAC TTTTTTTATTATGTT CLL_A1330 1368282 - 1367893 - | hypothetical protein CLL_A1331 1368464 - 1369420 + | cobalamin synthesis protein CobW CLL_A1333 1369435 - 1370091 + | putative cobalamin synthesis protein CLL_A1332 1370211 - 1370065 - | hypothetical protein CLL_A1334 1370162 - 1371085 + | transporter TERM 1806 1371184 - 1371143 - TR 72 -3.9 -5.28166 | opp_overlap 1371144 1371145, overlap 1371145 CAAAATTAAGAAAAA TATGGCTGTTTTCAT ATGAATTTATTA ATGAAAACAGCCACT TTAATCTTTTACTCA TERM 1807 1371144 - 1371183 + Tr 71 -6.7 -4.09285 | gap 1, opp_overlap 1371143 1371145, overlap 1371145 AAAATTAAGAAAAAT ATGGCTGTTTTCATATGA ATTTA TTA-ATGAAAACAGCCAC TTTAATCTTTTACTC TERM 1808 1371182 - 1371145 - TR 84 -8.7 -4.23353 | opp_overlap 1371144 1371145, overlap 1371143 AAATTAAGAAAAATA TGGCTGTTTTCAT ATGAATTTATTA ATGAAAACAGCCA CTTTAATCTTTTACT TERM 1809 1371145 - 1371182 + Tr 82 -10.2 -3.04486 | gap 1, opp_overlap 1371145 1371143, overlap 1371144 AAATTAAGAAAAATA TGGCTGTTTTCATATGA ATTTA TTA-ATGAAAACAGCCA CTTTAATCTTTTACT CLL_A1335 1371591 - 1371193 - | putative conserved hypothetical protein TERM 1810 1371779 - 1371739 - R 78 -6.4 -4.91194 | gap 1, opp_overlap 1371739, overlap 1371741 ATAATAAATATAAAA TATCGGATATAAAGTAACA AAAG TGC-ACTTAATATCCGACA GTTTTTATAGTATAT TERM 1811 1371777 - 1371741 - R 71 -6.8 -4.04608 | gap 1, opp_overlap 1371739, overlap 1371739 AATAAATATAAAATA TCGGATATAAAGTAACA AAAG TGC-ACTTAATATCCGA CAGTTTTTATAGTAT CLL_A1336 1372376 - 1371816 - | putative lipoprotein TERM 1812 1372117 - 1372136 + g 100 -9.4 -5.01732 | TTGTCACCATCTGTG CTTTTAGG ATTT CCTAAAAG TTTTTTAACAGCATT CLL_A1337 1373416 - 1372508 - | integral membrane protein domain protein TERM 1813 1373281 - 1373269 - G 72 -6.3 -4.36411 | opp_overlap 1373269 GATGAATTAGTAAAA GCATA ATG TATGC TATTGAAAATCTAAG CLL_A1338 1373617 - 1373826 + | hypothetical protein CLL_A1339 1375115 - 1373967 - | ATP-dependent RNA helicase TERM 1814 1374743 - 1374759 + g 77 -5.2 -5.04222 | CAACTATTATATGAG GCTTAA CTTCT TTAAGC TTTTTAATTTGATTA CLL_A1340 1375430 - 1376872 + | ATP-dependent RNA helicase DbpA TERM 1815 1377558 - 1377542 - g 81 -7.3 -4.67641 | AGTTTAAAATTAAAA GGTGAAA TTG TTCCACC GAGAGAAGTAATAAA map 1377440 - 1378309 + | methionine aminopeptidase, type I TERM 1816 1378445 - 1378409 - f 100 -14.1 -3.0782 | opp_overlap 1378402 1378409, overlap 1378411 TAATTGTTTAATAGA TACTCTCTTATGTTT AAAACAA AAACATAAGAGAGTA TTTTTTGTATGAGTT TERM 1817 1378409 - 1378445 + F 100 -14.1 -5.38951 | opp_overlap 1378409 1378411, overlap 1378402 TAATTGTTTAATAGA TACTCTCTTATGTTT AAAACAA AAACATAAGAGAGTA TTTTTTGTATGAGTT TERM 1818 1378443 - 1378411 - f 90 -12.3 -3.09452 | opp_overlap 1378402 1378409, overlap 1378409 ATTGTTTAATAGATA CTCTCTTATGTTT AAAACAA AAACATAAGAGAG TATTTTTTGTATGAG CLL_A1342 1378564 - 1378701 + | hypothetical protein TERM 1819 1378740 - 1378786 + F 100 -13.9 -5.55769 | opp_overlap 1378739 1378738 1378742 CTACACCATGAAACG CACGACCATTTGTATATGGCT TGAAT AGCTACTTACAGATGGTCGTG TTTTTTATTGTCACG TERM 1820 1378876 - 1378896 + F 80 -8.3 -4.22346 | TGTTTGCTATGGTGC TAACTGACC TAC GGACAGTTA TTTTGCATAAATTTA CLL_A1343 1380229 - 1380480 + | hypothetical protein CLL_A1344 1380600 - 1381082 + | hypothetical protein TERM 1821 1381270 - 1381258 - g 77 -4.9 -5.27923 | GAAGTGCACAAAAAA TTAGT TGT ACTAA TGAATGTAGACGAGA CLL_A1345 1381093 - 1381704 + | hypothetical protein TERM 1822 1382712 - 1382702 - g 73 -5.4 -4.71186 | AGTATGAAGAGAAAA CAAG AGA CTTG TACGATTTGAGAATA CLL_A1346 1381711 - 1383567 + | hypothetical protein CLL_A1347 1383560 - 1384186 + | thymidylate kinase CLL_A1348 1384183 - 1385175 + | hypothetical protein thyA 1385176 - 1386177 + | thymidylate synthase CLL_A1350 1386215 - 1386709 + | hypothetical protein CLL_A1351 1386727 - 1387572 + | hypothetical protein CLL_A1352 1387702 - 1388619 + | hypothetical protein CLL_A1353 1388643 - 1389248 + | hypothetical protein TERM 1823 1389369 - 1389341 - f 78 -6.7 -4.84492 | overlap 1389333 1389336 TTAATTAGAAGAAAA CCTCTTTTTCCAC CAA GAAGAAATAGAGG AAAAATACTTGATTT CLL_A1354 1389417 - 1389575 + | hypothetical protein CLL_A1355 1389590 - 1390135 + | hypothetical protein CLL_A1356 1390473 - 1390829 + | hypothetical protein CLL_A1357 1391208 - 1390960 - | transposase CLL_A1358 1391674 - 1391477 - | transposase TERM 1824 1391792 - 1391802 + H 82 -5.4 -5.5604 | opp_overlap 1391792 TCATAACACAGATAA TCCA CTA TGGA TTTTTTATTGGTTCA TERM 1825 1392555 - 1392538 - g 100 -8.5 -5.47821 | ATTTATTTAAAAAAA TAGCATC AGAA GATGCTA CAAGTAATTTGGATA CLL_A1359 1391889 - 1393559 + | hypothetical protein TERM 1826 1393738 - 1393773 + F 100 -15 -5.08824 | gap 1, opp_overlap 1393738 ATATAATTGAAAAAA TGCACCCATCTTATGTA TTT TAC-TAAGGTGGGTGCA TTTTTTAGGTGAGGG TERM 1827 1393773 - 1393738 - f 100 -12.8 -5.20154 | gap 1, opp_overlap 1393738 ATATAATTGAAAAAA TGCACCCATCTTATGTA TTT TAC-TAAGGTGGGTGCA TTTTTTAGGTGAGGG CLL_A1360 1394130 - 1394495 + | transposase TERM 1828 1394737 - 1394705 - f 72 -8 -3.60957 | opp_overlap 1394704, overlap 1394703 TTAAGAAAAAAATTA CCTTAAATCAAT GATGTAAAA ATTGATTTAAGG ACTTAATATATATAA CLL_A1361 1395024 - 1395809 + | electron transfer flavoprotein beta-subunit CLL_A1362 1395831 - 1396769 + | electron transfer flavoprotein alpha-subunit TERM 1829 1398474 - 1398450 - g 70 -8.7 -2.71924 | overlap 1398449 1398452 GATTTGTCCTCAAAG TATTGCAATTG GCG CAAGTGCAATA GGCAAATCTGGTTCG lctP 1397041 - 1398585 + | L-lactate permease CLL_A1364 1398740 - 1400176 + | oxidase, FAD-binding CLL_A1365 1400350 - 1401489 + | acyl-coa dehydrogenase, short-chain specific TERM 1830 1401593 - 1401548 - T 72 -8.7 -2.50991 | gap 1, opp_overlap 1401553, overlap 1401553 ATTTAAATAAACTAT GAAAATAACAAGTTCAACTATA TAT TATAGG-GAACTTGTTATTTTT TATGTCTTTAATTGG TERM 1831 1401588 - 1401553 - T 82 -8.6 -4.41897 | gap 1, opp_overlap 1401553, overlap 1401548 AATAAACTATGAAAA TAACAAGTTCAACTATA TAT TATAGG-GAACTTGTTA TTTTTTATGTCTTTA TERM 1832 1401553 - 1401588 + T 100 -8.6 -5.51046 | gap 1, opp_overlap 1401553 1401548 AATAAACTATGAAAA TAACAAGTTCAACTATA TAT TATAGG-GAACTTGTTA TTTTTTATGTCTTTA CLL_A1366 1402235 - 1401729 - | ABC transporter ATP-binding protein katG 1402613 - 1404805 + | catalase/peroxidase HPI TERM 1833 1404902 - 1404891 - T 76 -3 -5.82036 | ATAACAAAGAAAAAA TAGT AAAG ACTA GAAATGATTCAAGAA CLL_A1368 1405956 - 1405219 - | hypothetical protein CLL_A1369 1407294 - 1406002 - | pyridine nucleotide-disulphide oxidoreductase domain protein TERM 1834 1406800 - 1406818 + g 82 -2.4 -6.04378 | AGCAATAACTAATTT CTTTGCTA AAA TAGAAGAG TTTTTTTTATGATTT CLL_A1370 1408599 - 1407313 - | pyridine nucleotide-disulphide oxidoreductase domain protein TERM 1835 1408682 - 1408704 + r 90 -10.8 -3.4529 | opp_overlap 1408682 1408681 1408680 1408686, overlap 1408686 TGTTTTTATAAAATT TAAATAGGTA GGC TACCTATTTA TTATAATACTAATCT TERM 1836 1408704 - 1408682 - R 81 -10.8 -2.52946 | opp_overlap 1408682 1408686, overlap 1408681 1408680 1408686 TGTTTTTATAAAATT TAAATAGGTA GGC TACCTATTTA TTATAATACTAATCT TERM 1837 1408686 - 1408700 + r 75 -7.2 -4.36554 | opp_overlap 1408686 1408682 1408681 1408680, overlap 1408682 TTTATAAAATTTAAA TAGGTA GGC TACCTA TTTATTATAATACTA TERM 1838 1408700 - 1408686 - R 71 -7.2 -3.96705 | opp_overlap 1408682 1408686, overlap 1408682 1408681 1408680 TTTATAAAATTTAAA TAGGTA GGC TACCTA TTTATTATAATACTA TERM 1839 1408805 - 1408759 - R 100 -10.6 -5.83226 | gap 1, opp_overlap 1408759 1408763 1408802 1408803 AATGTAATAAAAAAA TAAACTGATCTC-AAATAGAA GTTTGT TTCTATTTTGAGACCAGCTTA TTTTTTATTTTAAAA TERM 1840 1408759 - 1408805 + r 90 -6.9 -5.79595 | gap 1, opp_overlap 1408759, overlap 1408763 1408802 1408803 AATGTAATAAAAAAA TAAACTGATCTC-AAATAGAAG TTTG TTTCTATTTTGAGACCAGCTTA TTTTTTATTTTAAAA TERM 1841 1408763 - 1408801 + r 72 -7.7 -3.52805 | gap 1, opp_overlap 1408759, overlap 1408759 TAATAAAAAAATAAA CTGATCTC-AAATAGAAG TTTG TTTCTATTTTGAGACCAG CTTATTTTTTATTTT TERM 1842 1408808 - 1408827 + r 73 -3 -5.80003 | overlap 1408803 1408802 1408816 TGAGACCAGCTTATT TTTTATTT TAAA AAGTAAAA TTTTTTATTTATTAA CLL_A1371 1409308 - 1408850 - | transcriptional regulator, MarR family CLL_A1372 1411166 - 1409418 - | ABC transporter, ATP-binding protein TERM 1843 1411215 - 1411196 - H 74 -5 -5.1925 | opp_overlap 1411196, overlap 1411198 TTATAACTTAAAAAA GAGCTTAT AAAA ATAAGCGC TTTAATATATTCTTA TERM 1844 1411213 - 1411198 - H 70 -6.2 -4.21792 | opp_overlap 1411196, overlap 1411196 ATAACTTAAAAAAGA GCTTAT AAAA ATAAGC GCTTTAATATATTCT CLL_A1373 1411857 - 1412834 + | PTS system sorbose subfamily IIB component TERM 1845 1412842 - 1412832 - f 76 -2.6 -5.86609 | opp_overlap 1412832, overlap 1412836 TTAAAAAAACAAAAA TAAT TTA ATTA TTAATAAAAGGAGGA TERM 1846 1413081 - 1413065 - g 71 -8 -3.24232 | overlap 1413063 GGTTGGGCAAATATA GGTGCT GCCGT AGCACC AGATGCAGCATTAGC CLL_A1374 1412867 - 1413676 + | PTS system sorbose-specific iic component CLL_A1375 1413696 - 1414607 + | PTS system mannose/fructose/sorbose family IID component TERM 1847 1414621 - 1414641 + F 100 -13.3 -4.66987 | overlap 1414616 AATATTTTTTGCTTA GCCTAGGCT TTT AGCCTGGGC TTTTGTTAACATATA TERM 1848 1415015 - 1415005 - g 70 -6.8 -4.06055 | overlap 1415000 1415006 ACTGTTTAAAGGAAA GTGG ATT CCAC GATATGCAATCCAAA CLL_A1376 1414811 - 1415185 + | hypothetical protein TERM 1849 1415345 - 1415327 - f 79 -9 -3.59867 | opp_overlap 1415327, overlap 1415320 1415323 1415319 TAAAAAATTAAGGAA CTTACTAT TTT ATAGTAAG TTTTTTTATTATCTT TERM 1850 1415327 - 1415345 + F 100 -9 -5.94214 | opp_overlap 1415320 1415327 1415323 1415319 TAAAAAATTAAGGAA CTTACTAT TTT ATAGTAAG TTTTTTTATTATCTT TERM 1851 1416006 - 1415986 - g 72 -4.8 -4.91429 | AAACTGCAAAGAAAA CATTTACT AATAA AGCAAATG GAGAATATACTTATA CLL_A1377 1415532 - 1417607 + | putative secreted chitodextrinase CLL_A1378 1417673 - 1418749 + | chitinase D TERM 1852 1418794 - 1418747 - f 95 -9.4 -4.79752 | opp_overlap 1418750 1418755, overlap 1418729 1418755 TTTAATAATATAAAA TAAAAAAATGAGGTGCATAG GAATTAAT CTTTGCACCTCATTTTCTTT GTACTTCATTTTATG TERM 1853 1418750 - 1418791 + F 86 -9.6 -4.12841 | opp_overlap 1418747 1418755, overlap 1418755 AATAATATAAAATAA AAAAATGAGGTGCATAGG AATTAA TCTTTGCACCTCATTTTC TTTGTACTTCATTTT TERM 1854 1418786 - 1418755 - f 100 -8.8 -6.14618 | opp_overlap 1418750 1418755, overlap 1418747 TATAAAATAAAAAAA TGAGGTGCATAG GAATTAAT CTTTGCACCTCA TTTTCTTTGTACTTC TERM 1855 1418755 - 1418786 + F 100 -9.5 -5.04733 | opp_overlap 1418755 1418747, overlap 1418750 TATAAAATAAAAAAA TGAGGTGCATAGG AATTAA TCTTTGCACCTCA TTTTCTTTGTACTTC CLL_A1379 1418939 - 1419613 + | DNA-binding response regulator CLL_A1380 1419598 - 1420725 + | sensory transduction histidine kinase CLL_A1381 1420778 - 1422175 + | putative ABC transporter permease protein CLL_A1382 1422182 - 1422850 + | lipoprotein-releasing system ATP-binding protein LolD CLL_A1383 1422855 - 1423052 + | hypothetical protein CLL_A1384 1423077 - 1423445 + | hypothetical protein TERM 1856 1423476 - 1423452 - T 70 -3.7 -5.20333 | overlap 1423454 GAGGGATAATAAAAA TAGACTTTATA AAT TATAAAATCTG GAGAATAGGAGCAGT TERM 1857 1423474 - 1423454 - T 70 -6.3 -4.22377 | overlap 1423452 GGGATAATAAAAATA GACTTTATA AAT TATAAAATC TGGAGAATAGGAGCA TERM 1858 1423488 - 1423525 + T 100 -13.8 -6.01187 | opp_overlap 1423487 TCTGGAGAATAGGAG CAGTAGATAGATTTGT TTTTAC ATAAATCTATCTACTG TTTTTTTGTTTCATT TERM 1859 1424090 - 1424061 - T 100 -13.9 -5.93252 | opp_overlap 1424063, overlap 1424089 CTTAAAAATAAAAAA TATTACTGGAAAT GAAA ATTTCCAGTAATA TTAAAATAATAATCA TERM 1860 1424063 - 1424088 + T 90 -12.1 -3.07222 | opp_overlap 1424061 TAAAAATAAAAAATA TTACTGGAAAT GAAA ATTTCCAGTAA TATTAAAATAATAAT CLL_A1385 1424627 - 1424145 - | hypothetical protein TERM 1861 1424419 - 1424429 + g 71 -4 -5.09259 | GTGTTCATTTCTTTT GTAT CGC ATAC TTTTATTTTACCATC TERM 1862 1424958 - 1424923 - g 75 -7.9 -4.005 | opp_overlap 1424923 AAATGAATTTAGAAA GTTAAAAGTAGTAAT TAGTAC ATTATTACTTTTAAC TTTATTTAGTTTAAG TERM 1863 1424923 - 1424958 + G 93 -10.1 -4.62772 | opp_overlap 1424923 AAATGAATTTAGAAA GTTAAAAGTAGTAAT TAGTAC ATTATTACTTTTAAC TTTATTTAGTTTAAG CLL_A1386 1424876 - 1426858 + | putative beta-lactamase CLL_A1387 1427002 - 1427697 + | regulatory protein VanR CLL_A1388 1427687 - 1428781 + | two-component sensor histidine kinase modA 1429067 - 1429861 + | molybdate ABC transporter, periplasmic molybdate-binding protein TERM 1864 1430280 - 1430294 + G 70 -2.1 -5.4492 | ATATTGTTACTAAAT TAGGA ATAGA TCCTG TTTTTTCTGTATATG CLL_A1390 1429904 - 1430713 + | hypothetical protein CLL_A1391 1430734 - 1431771 + | spermidine/putrescine import ATP-binding protein PotA TERM 1865 1431976 - 1431964 - g 89 -7.7 -5.01042 | opp_overlap 1431963 1431964 AAGGGAAAGGAAAAA CTGCT TGA AGCAG ATTTTAGAGGCCAAA CLL_A1392 1431793 - 1432527 + | hypothetical protein TERM 1866 1432604 - 1432643 + F 100 -13.2 -5.56263 | opp_overlap 1432604 TATAAGTTTAAATAA GATTGATTCGAGATGATT TTTC AGTCATTTTGAATCAATC TTTTTGTTTTATAGT TERM 1867 1432900 - 1432914 + G 81 -8.6 -4.17762 | ATAGGCTTTCTAGTA GCTTTC ACT GAAAGC TTCTTTTCACCACTA CLL_A1393 1432825 - 1433412 + | snare associated golgi protein TERM 1868 1433644 - 1433690 + F 100 -17.1 -6.09196 | gap 1, opp_overlap 1433644 CCAGGAACCGTAAAA TCCTGATTACAAAGAAA-AGGA TACG TCTTTTTTCTTTGTAATCAGGA TTTTTTTATTTTAAA TERM 1869 1433690 - 1433644 - f 100 -14.9 -4.20696 | gap 1, opp_overlap 1433644 CCAGGAACCGTAAAA TCCTGATTACAAAGAA-AAGGA TACG TCTTTTTTCTTTGTAATCAGGA TTTTTTTATTTTAAA TERM 1870 1435218 - 1435202 - g 70 -8.1 -3.09516 | GTTTTTAGCAGTTAA TCATCTT AAA AAGATGA ATGGAGGAATTGCAA ade 1433742 - 1435487 + | adenine deaminase TERM 1871 1435547 - 1435578 + T 89 -12.5 -2.91274 | opp_overlap 1435547, overlap 1435551 TAACACAGTATATAA GTAACCTCATCAT AGTGTC ATGATGAGGTTGC TATAATTAAGCTAAA TERM 1872 1435578 - 1435547 - T 95 -11 -3.6018 | opp_overlap 1435547 1435551 TAACACAGTATATAA GTAACCTCATCATA GTGT CATGATGAGGTTGC TATAATTAAGCTAAA TERM 1873 1435551 - 1435574 + T 82 -9.7 -3.32647 | opp_overlap 1435547, overlap 1435547 ACAGTATATAAGTAA CCTCATCAT AGTGTC ATGATGAGG TTGCTATAATTAAGC asnB 1437220 - 1435631 - | asparagine synthase (glutamine-hydrolyzing) TERM 1874 1437332 - 1437301 - R 100 -11 -5.7946 | overlap 1437325 TTTCTAATAAAAAAA GCCCTTCATCCTAT AAAC ATAGGACGAAAGAC TTAAACTTCCGTGGT CLL_A1396 1439231 - 1437909 - | hypothetical protein TERM 1875 1438530 - 1438543 + g 72 -6.7 -4.08485 | ATGGAATGTTTCTTT CTGCT CAGT AGCAG TTTGCTTTGAATCAC TERM 1876 1439242 - 1439254 + H 80 -6.3 -5.14163 | TTCATATATAGTCCT CTCAT TTC ATGAG TTTTTATTAGTGCAT CLL_A1397 1439669 - 1440457 + | hypothetical protein CLL_A1398 1440586 - 1441083 + | hypothetical protein TERM 1877 1441166 - 1441200 + F 100 -9.5 -5.1963 | opp_overlap 1441166 GGACATAAATATTAA GCCAATTGTTTAGAG AAAAA TTCTAAATAGTTGGC TTTTTCTTAATTGGA TERM 1878 1441262 - 1441241 - f 74 -6.1 -4.59069 | ATTATAATGAGAAAA TATTTTTAT TTTA ATAAAAATA TGAAGAAATTGTTGC CLL_A1399 1442036 - 1443418 + | D-serine/D-alanine/glycine transporter CLL_A1400 1444313 - 1443471 - | choline/ethanolamine kinase family protein TERM 1879 1443817 - 1443840 + g 74 -6.2 -4.5187 | CCTATAGTTGGATTA TTATTTAGAA CAAA TTCTAGATAA TTTAATTTTTTTGAA TERM 1880 1444796 - 1444820 + rH 95 -8.6 -5.17576 | overlap 1444804 TAGTATGTATTTTTA GAGCTACTCT CAAGA AGGGTGGCTC TTTTTTGAGTTAATA CLL_A1401 1444917 - 1444780 - | hypothetical protein TERM 1881 1445545 - 1445559 + GH 70 -7.2 -3.67597 | opp_overlap 1445544 1445545 TGGAGCTAAAAATAT TTTTGG AGA CCAAAA TTCTTGGATAACAAC CLL_A1402 1444895 - 1445824 + | iron chelate uptake ABC transporter, FeCT family, solute-binding protein TERM 1882 1445876 - 1445904 + G 90 -11.1 -3.5485 | overlap 1445871 1445878 ATTTTTAATTTTATG CATTGGAACTTCC ATT GGGAGTTCCAATA TTGGTATTTTAGATA TERM 1883 1445878 - 1445902 + G 100 -13.7 -3.33884 | overlap 1445876 1445871 TTTTAATTTTATGCA TTGGAACTTCC ATT GGGAGTTCCAA TATTGGTATTTTAGA CLL_A1403 1445805 - 1446830 + | iron(III) dicitrate transport system permease protein FecD TERM 1884 1447112 - 1447130 + G 80 -9 -3.62224 | TATACATTTTCCTTA TACTGTTT TTG AAACAGTA TTATTGGGAAGATAT CLL_A1404 1446846 - 1447607 + | ferrichrome transport ATP-binding protein FhuC CLL_A1405 1447664 - 1448314 + | putative conserved hypothetical protein TERM 1885 1448455 - 1448408 - f 100 -16 -2.5001 | opp_overlap 1448409, overlap 1448412 AGAACCTTTATTAAT GGAAGTTACCTTTGAAAAAG ATTTTTGA CTTTTTCAAAGGTAACTTCT TTTCATTGTATGAAA TERM 1886 1448409 - 1448454 + F 100 -19.5 -4.53034 | opp_overlap 1448408 1448412 GAACCTTTATTAATG GAAGTTACCTTTGAAAAAG ATTTTTGA CTTTTTCAAAGGTAACTTC TTTTCATTGTATGAA TERM 1887 1448451 - 1448412 - f 100 -15.4 -3.20723 | opp_overlap 1448409, overlap 1448408 CCTTTATTAATGGAA GTTACCTTTGAAAAAG ATTTTTGA CTTTTTCAAAGGTAAC TTCTTTTCATTGTAT CLL_A1406 1448588 - 1449268 + | regulatory protein VanR TERM 1888 1449248 - 1449284 + F 86 -9 -4.48263 | opp_overlap 1449254 GTATGGGGGATGGGA TACAGATTGAGTAAAA AATAA TTTTATTCAAGCTGTA TTTTAATATTATCTC CLL_A1407 1449377 - 1450297 + | bacitracin transport ATP-binding protein BcrA CLL_A1408 1450290 - 1451057 + | hypothetical protein TERM 1889 1451364 - 1451383 + G 86 -9.4 -3.70742 | opp_overlap 1451363 1451362 CATGATTTGAGAACG CCTTTAAC TGCA GTTAAAGG TTATATTCAGCTTTT CLL_A1409 1451154 - 1451975 + | two component sensor kinase TERM 1890 1452900 - 1452890 - g 70 -5.4 -4.62051 | AAATATCACAGAAAA TCCA TTA TGGA GGGGAAGCGAACCTA CLL_A1410 1452000 - 1453445 + | hypothetical protein TERM 1891 1453678 - 1453704 + F 87 -6.6 -5.33405 | opp_overlap 1453673 1453677 1453682, overlap 1453683 ATGCGTAATACAATG GAAAGCCCCTTG AAT TAAGGGCTTTTC TTTTTGTTTAATGAA TERM 1892 1453683 - 1453699 + F 70 -2.9 -5.48028 | opp_overlap 1453673 1453682 1453677, overlap 1453678 TAATACAATGGAAAG CCCCTTG AAT TAAGGGC TTTTCTTTTTGTTTA TERM 1893 1453839 - 1453820 - f 82 -9.4 -3.36694 | opp_overlap 1453820 1453811, overlap 1453818 ATGGAGTCTTAAATA TTAGTTGC ACAT GCAACTAA TTTGTGATATTTTAA TERM 1894 1453820 - 1453839 + F 86 -9.4 -4.13711 | opp_overlap 1453818 1453820, overlap 1453811 ATGGAGTCTTAAATA TTAGTTGC ACAT GCAACTAA TTTGTGATATTTTAA CLL_A1411 1453894 - 1454328 + | MarR-family transcriptional regulator TERM 1895 1455644 - 1455618 - g 84 -11 -2.57132 | opp_overlap 1455621, overlap 1455617 1455621 TTTGGTTTGCACAAC CAACTGCTGATA TTG TATCATCAGTTG TAACAGGTATTTTTT CLL_A1412 1454348 - 1455730 + | mate efflux family protein TERM 1896 1455988 - 1455937 - f 100 -11.4 -4.52347 | gap 1, opp_overlap 1455944, overlap 1455944 GAAATAATAGTAAAA GATTATAGCATAAGTAAAATAAAAA TGA TTTTTATTTTACTTATGCTTTT-TC TATAGATAATGAAGT TERM 1897 1455982 - 1455944 - f 100 -19.4 -3.02856 | opp_overlap 1455944, overlap 1455937 TAGTAAAAGATTATA GCATAAGTAAAATAAAAA TGA TTTTTATTTTACTTATGC TTTTTCTATAGATAA TERM 1898 1455944 - 1455982 + F 100 -19.4 -4.99035 | opp_overlap 1455937 1455944 TAGTAAAAGATTATA GCATAAGTAAAATAAAAA TGA TTTTTATTTTACTTATGC TTTTTCTATAGATAA CLL_A1413 1456515 - 1458392 + | hypothetical protein CLL_A1414 1458556 - 1460031 + | hypothetical protein CLL_A1415 1460217 - 1460636 + | hypothetical protein TERM 1899 1460867 - 1460897 + F 100 -10.5 -6.34424 | opp_overlap 1460853 1460869, overlap 1460869 ACATTAAATGTATTT AATGGGATACGCT TATAT GGCGTATCCCATA TTTTTTTTTTGCAAA TERM 1900 1460895 - 1460869 - f 93 -12.4 -3.11999 | opp_overlap 1460869 1460867, overlap 1460853 ATTAAATGTATTTAA TGGGATACGC TTATATG GCGTATCCCA TATTTTTTTTTTGCA TERM 1901 1460869 - 1460895 + F 100 -13.1 -4.82685 | opp_overlap 1460853 1460869, overlap 1460867 ATTAAATGTATTTAA TGGGATACGCT TATAT GGCGTATCCCA TATTTTTTTTTTGCA CLL_A1416 1460960 - 1461586 + | thiamine transporter protein CLL_A1417 1461558 - 1462211 + | tena/thi-4 family TERM 1902 1462274 - 1462307 + F 100 -13.5 -4.59511 | gap 1, opp_overlap 1462272 1462280, overlap 1462278 TATTATGTTTAAATT GT-AAGATCCACAATA TTA TATTGTGGATCTTTAC TTTTTAAAAAATATT TERM 1903 1462278 - 1462302 + F 100 -14.5 -4.32046 | opp_overlap 1462272 1462280, overlap 1462274 ATGTTTAAATTGTAA GATCCACAATA TTA TATTGTGGATC TTTACTTTTTAAAAA TERM 1904 1462300 - 1462280 - f 90 -11.3 -3.12668 | opp_overlap 1462278 1462274, overlap 1462272 GTTTAAATTGTAAGA TCCACAATA TTA TATTGTGGA TCTTTACTTTTTAAA TERM 1905 1463339 - 1463326 - g 76 -8.1 -3.75832 | opp_overlap 1463326 1463326 1463327, overlap 1463320 1463327 AAAATTAGAGCTAAA GCAGC AGCG GCTGC TGGTTCTGATGCACG TERM 1906 1463341 - 1463327 - g 80 -10 -2.84414 | opp_overlap 1463326 1463326 1463327, overlap 1463320 1463326 AAATTAGAGCTAAAG CAGCAG CGG CTGCTG GTTCTGATGCACGTA TERM 1907 1463327 - 1463341 + G 78 -10 -2.64416 | opp_overlap 1463320 1463326 1463327, overlap 1463326 1463326 AAATTAGAGCTAAAG CAGCAG CGG CTGCTG GTTCTGATGCACGTA CLL_A1418 1462606 - 1463883 + | hypothetical protein CLL_A1419 1463932 - 1464684 + | DnaJ domain protein TERM 1908 1464767 - 1464801 + F 73 -3.1 -5.60993 | AATATAACATAATTA GAAATACTTAAAG AAATATAAC TTTTAGGTATTTC TTTTTTTATAAAAAA TERM 1909 1464857 - 1464817 - f 70 -3.6 -5.24129 | overlap 1464819 TTTTTTTATAAAAAA TCTTTAGAATAATTGAAA GTTTA TTTATATTATTCTAAAAA TTAAATTTATAAATT TERM 1910 1465218 - 1465231 + G 74 -3.9 -5.28826 | GAGACAAATTAGCAT TAAAG TTAA CTTTA TTTTTTATGACATTT CLL_A1420 1464980 - 1466185 + | transporter, major facilitator family TERM 1911 1466243 - 1466233 - f 79 -4 -5.68023 | CCATAACGAAAAAAA CATA GTA TATG CATAACAGCTACTCT CLL_A1421 1466305 - 1467531 + | transporter, major facilitator family TERM 1912 1467523 - 1467549 + F 100 -7.5 -5.75538 | opp_overlap 1467523 GCATTTAGCTTAAAA CTTTCTTAAAA GTAAA TTTTAGGAAAG TTTTTCTTTTTTGAA CLL_A1424 1469198 - 1469929 + | glycine betaine/carnitine/choline transport ATP-binding protein CLL_A1425 1469937 - 1470050 + | hypothetical protein TERM 1913 1470115 - 1470059 - f 72 -4.8 -5.02502 | gap 1, opp_overlap 1470067, overlap 1470067 TAGATGATATAAAAA TGTA-AAAAGTCCCCCTATAAGATA GAAAAAAA TATCCTATAGGAGGACTTTTATGTA CAATAGAATAAATGA TERM 1914 1470067 - 1470106 + F 81 -8 -4.54047 | opp_overlap 1470059 1470067 ATAAAAATGTAAAAA GTCCCCCTATAAGATA GAAAAAAA TATCCTATAGGAGGAC TTTTATGTACAATAG TERM 1915 1470106 - 1470067 - f 100 -12.4 -4.93595 | opp_overlap 1470067, overlap 1470059 ATAAAAATGTAAAAA GTCCCCCTATAAGATA GAAAAAAA TATCCTATAGGAGGAC TTTTATGTACAATAG CLL_A1426 1470541 - 1472856 + | probable cation-transporting ATPase E TERM 1916 1473279 - 1473307 + F 93 -9 -4.84673 | gap 1 ATTTGATTTTTTATA TCCTCGTTT-GGC TTGG GCTAAAACGAGGA TTTTATATTATTTAG TERM 1917 1473612 - 1473643 + F 95 -7.4 -5.83211 | ACATAATATTCATTA CCTGTTTTCTAAAT ATAA ATTTAGTTAACAGG TTTTTTATTTTAATA mgtA 1473717 - 1476416 + | magnesium-translocating P-type ATPase TERM 1918 1476489 - 1476436 - f 71 -6.4 -4.08164 | gap 1, opp_overlap 1476443 1476485, overlap 1476441 1476442 1476443 1476445 AAAACTTGATACAAA TAAAATGTACCCTATAGGTAGAC AATAAAGAA GTCTATCTATAGGGTAT-TTTTA TGTATGATAAAATAA TERM 1919 1476485 - 1476441 - f 70 -4.4 -5.05113 | opp_overlap 1476443, overlap 1476436 1476442 1476443 1476445 TTGATACAAATAAAA TGTACCCTATAGGTAGAC AATAAAGAA GTCTATCTATAGGGTATT TTTATGTATGATAAA TERM 1920 1476484 - 1476442 - f 72 -7.9 -3.61983 | opp_overlap 1476443, overlap 1476441 1476436 1476443 1476445 TGATACAAATAAAAT GTACCCTATAGGTAGAC AATAAAGAA GTCTATCTATAGGGTAT TTTTATGTATGATAA TERM 1921 1476483 - 1476443 - f 85 -11.4 -2.76105 | opp_overlap 1476443, overlap 1476442 1476441 1476436 1476445 GATACAAATAAAATG TACCCTATAGGTAGAC AATAAAGAA GTCTATCTATAGGGTA TTTTTATGTATGATA TERM 1922 1476443 - 1476483 + F 100 -13.6 -5.05601 | opp_overlap 1476442 1476441 1476436 1476443 1476445 GATACAAATAAAATG TACCCTATAGGTAGAC AATAAAGAA GTCTATCTATAGGGTA TTTTTATGTATGATA TERM 1923 1476481 - 1476445 - f 76 -9.6 -2.90494 | opp_overlap 1476443, overlap 1476443 1476442 1476441 1476436 TACAAATAAAATGTA CCCTATAGGTAGAC AATAAAGAA GTCTATCTATAGGG TATTTTTATGTATGA TERM 1924 1476603 - 1476553 - f 84 -4.9 -5.64873 | opp_overlap 1476553 1476559 TCTAAGAATAAAAAA TTCCTCCAAAGTATACTGTTT TGTGTATTT ATACTGTCTACTTTAGAGGAA TCATATCATTGTTCT TERM 1925 1476709 - 1476719 + F 70 -2.6 -5.60993 | overlap 1476697 TTTTAATAGTAGTAT TATA TTA TATA TTTTTTTATACCAGA CLL_A1428 1476817 - 1477668 + | metallo-beta-lactamase family protein CLL_A1429 1478008 - 1478409 + | hypothetical protein CLL_A1430 1478409 - 1478804 + | hypothetical protein TERM 1926 1478876 - 1478902 + F 88 -6.7 -5.56264 | opp_overlap 1478876 1478866 TTAAAGTATTATAAA TGACTAATGTA CCGGA TTCATTAGTCA TTTTTTATATTTAGA TERM 1927 1478902 - 1478876 - f 73 -7.4 -4.04209 | opp_overlap 1478876, overlap 1478866 TTAAAGTATTATAAA TGACTAATGTAC CGG ATTCATTAGTCA TTTTTTATATTTAGA TERM 1928 1478928 - 1478942 + F 70 -2.8 -5.52384 | opp_overlap 1478924, overlap 1478930 TTAGAATATTACTAT CAGTTA AAC TAACAG TTTTTTTAATGAACC CLL_A1431 1479004 - 1479333 + | hypothetical protein CLL_A1432 1479463 - 1480161 + | carbonic anhydrase TERM 1929 1480197 - 1480218 + F 85 -5.9 -5.54907 | opp_overlap 1480192 1480197 1480199, overlap 1480199 TATGAAAAAATAAAA TTCACAACG TTTT TGTTGTGGA TTTTTATTTTATAAA TERM 1930 1480218 - 1480197 - f 70 -3 -5.45813 | opp_overlap 1480197 1480199, overlap 1480192 1480199 TATGAAAAAATAAAA TTCACAAC GTTTTT GTTGTGGA TTTTTATTTTATAAA TERM 1931 1480812 - 1480850 + G 74 -8.3 -3.64703 | gap 1, opp_overlap 1480825 AGCTATGATTATTGG TTGCGTTACACCAGCTAT AATA GTAGCAGGTGT-ATGCAA TTTGAGTCCAGAAGA CLL_A1433 1480708 - 1482039 + | xanthine permease TERM 1932 1482075 - 1482103 + F 100 -8.2 -6.14618 | opp_overlap 1482075 TAATTTTTTATATAA GTTTGGATGAAC TTTTT GTTCTTCCAAGC TTTTTTTATTTTATA TERM 1933 1482473 - 1482458 - g 73 -7.6 -3.70511 | AAGACTACTGAACAA CACGAA GCTT TTCGTG AGAAAATTAGAGAAT TERM 1934 1482942 - 1482920 - g 70 -6.3 -4.09509 | opp_overlap 1482925 ACTAATGCAGATAAA GCAGACACA TATGT TGTGTTTGC TGTAACAACACCAGA TERM 1935 1483376 - 1483357 - g 71 -4.4 -4.94058 | gap 1 TGAACTTAAAGAAAA CCAT-GAAT CAT ATTCTATGG AAGCTGCTATGGCTA CLL_A1434 1482434 - 1484344 + | acyl-coA dehydrogenase TERM 1936 1484819 - 1484807 - g 73 -9.1 -2.66787 | GTAACATTCATAGCA GCACC AAT GGTGC ATTGGCCAGAAGCAA fprA 1484381 - 1485580 + | flavodoxin TERM 1937 1485727 - 1485697 - f 72 -8.5 -3.18274 | opp_overlap 1485697 1485704, overlap 1485704 TTTATCTCAAGCCAA TAAAAAACACACT TATAC AGTGTGTTTTTTT ATTATTGAATTTTAG TERM 1938 1485704 - 1485720 + F 93 -6.6 -5.95946 | opp_overlap 1485697 1485704, overlap 1485697 CAAGCCAATAAAAAA CACACT TATAC AGTGTG TTTTTTTATTATTGA TERM 1939 1485720 - 1485704 - f 88 -6.6 -5.5074 | opp_overlap 1485704 1485697, overlap 1485697 CAAGCCAATAAAAAA CACACT TATAC AGTGTG TTTTTTTATTATTGA TERM 1940 1486147 - 1486163 + G 81 -8.7 -4.11216 | TTTGCATTAATGGTA GCTGAGT TTG GCTCAGC TTTTAAGGATGAAAA TERM 1941 1486715 - 1486695 - g 86 -9.1 -4.37711 | opp_overlap 1486709, overlap 1486697 1486709 TGATGAAACTGAAAA TCCGGAAAA AAA TTTTCCGAA AGGAATTCTTGTTTC TERM 1942 1486713 - 1486697 - g 75 -9.5 -2.52419 | opp_overlap 1486709, overlap 1486695 1486709 ATGAAACTGAAAATC CGGAAAA AAA TTTTCCG AAAGGAATTCTTGTT TERM 1943 1487089 - 1487105 + G 72 -5.9 -4.47328 | overlap 1487092 AATGCTATGTGGATT CAAGCTA TTA TAGTTTG TTTTATGATAGCGTT CLL_A1436 1485967 - 1487478 + | amino acid permease family protein TERM 1944 1488217 - 1488249 + T 86 -7.9 -4.87665 | opp_overlap 1488217 1488212 CTATAAACTATAAAA TCCGCGATAATGT TTTAATT ATATTATCGTGGA TTTTTATGGCTAAAC CLL_A1439 1488699 - 1488271 - | hypothetical protein TERM 1945 1488707 - 1488719 + r 70 -6.3 -4.21141 | TTATCCATAAATCCT CCTAT GCT ATAGG TTTAGTTTATTGCAA CLL_A1440 1489198 - 1488824 - | transcriptional regulator TERM 1946 1489302 - 1489319 + H 82 -8.5 -4.4891 | GAAATTATCTATTGA CTTAGAG TTAA CTCTAAG TTTTATACTAATCAA TERM 1947 1489976 - 1489954 - g 70 -8.6 -2.64747 | overlap 1489953 GGACTTTATCAGAAT TTAGCTTTAC TTC GTAAAACTAA TGGAAAAGCAGAAAA TERM 1948 1490209 - 1490195 - g 75 -7.2 -4.14243 | CATTTGACTTTAAAA CTAAAG AAT CTTTAG TGAAAAGTGCTAGTG TERM 1949 1490307 - 1490275 - g 78 -5.8 -4.93177 | gap 1, opp_overlap 1490299, overlap 1490299 CAAAAAGCAAGAAAA GATAGCAG-TATTAT AGCA ATAACAGCTGCTACC CCAGCTTCAGTAGGC CLL_A1441 1489384 - 1491144 + | putative 1-deoxy-D-xylulose-5-phosphate synthase CLL_A1442 1491268 - 1492149 + | HAD-superfamily hydrolase, subfamily IIB TERM 1950 1492161 - 1492193 + F 100 -13 -4.6955 | ATAGACTTGATTTTA TGATCTGTATCAAA ATTAA TTTGATGCAGATCA TTTTATATATTGATA CLL_A1443 1492478 - 1492945 + | hypothetical protein TERM 1951 1494318 - 1494330 + G 73 -7.7 -3.71527 | AGGTGCAGCTGTTTA TGCAC ATA GTGCA TTTGAATGGTTAAAG CLL_A1444 1493179 - 1494357 + | thermostable carboxypeptidase 1 TERM 1952 1494394 - 1494419 + F 70 -2.6 -5.53288 | TTATAAATAAAAAGA GATCAGGATA CTAAAT TATACTGGTC TTTTTTTGAGTTAAA TERM 1953 1494899 - 1494889 - g 70 -5.4 -4.52101 | overlap 1494884 AATAATGAATCAAAA GCAA TTT TTGC AGCAGAAAATAGTGA CLL_A1445 1494778 - 1496394 + | beta-hexosaminidase TERM 1954 1496419 - 1496460 + F 80 -6.8 -5.00267 | overlap 1496421 TAAATATAAATATGT TGCCTATTATCATTTTGT TGTGTT ACAATGTGGTAATAGGTA TTTGTTTTTATAATT TERM 1955 1496421 - 1496458 + F 73 -7.2 -4.09508 | overlap 1496419 AATATAAATATGTTG CCTATTATCATTTTGT TGTGTT ACAATGTGGTAATAGG TATTTGTTTTTATAA TERM 1956 1496738 - 1496718 - g 84 -6.9 -5.0095 | opp_overlap 1496717 1496727 AAAAATACAAGAAAA GTTAGCTGA CTG TCAGGTAAC AGTGTTTAGTGAGAT CLL_A1446 1496575 - 1497723 + | alcohol dehydrogenase, iron-containing TERM 1957 1497754 - 1497733 - f 77 -8.7 -3.41636 | opp_overlap 1497735, overlap 1497735 AAGTAATTTAATTAA GACCACCTG GAAA CAGGTGGTT TTTTATTCTTTAGGA TERM 1958 1497752 - 1497735 - f 90 -11.3 -3.27109 | opp_overlap 1497735, overlap 1497733 GTAATTTAATTAAGA CCACCTG GAAA CAGGTGG TTTTTTATTCTTTAG TERM 1959 1497735 - 1497752 + F 100 -11.3 -5.72254 | opp_overlap 1497735 1497733 GTAATTTAATTAAGA CCACCTG GAAA CAGGTGG TTTTTTATTCTTTAG TERM 1960 1497924 - 1497945 + F 86 -9.5 -3.9122 | opp_overlap 1497918 1497916 1497928 1497929, overlap 1497929 AAAAATCGACGGCTC CAAAGTCGC CTTA GCGATTTTG TTATTTAGGAAACTA TERM 1961 1497929 - 1497940 + F 75 -5.8 -5.00196 | opp_overlap 1497918 1497916 1497928 1497929, overlap 1497924 TCGACGGCTCCAAAG TCGC CTTA GCGA TTTTGTTATTTAGGA CLL_A1447 1498221 - 1499057 + | transcriptional regulatory protein TERM 1962 1499119 - 1499154 + F 100 -15.1 -4.7339 | opp_overlap 1499119 TATACATATTAAAAA CAAGAATTCTTTTAG TATTCT CTAAAAGAATTCTTG TTTTTAAACTTTGTT TERM 1963 1499154 - 1499119 - f 100 -15.1 -4.86133 | opp_overlap 1499119 TATACATATTAAAAA CAAGAATTCTTTTAG TATTCT CTAAAAGAATTCTTG TTTTTAAACTTTGTT CLL_A1448 1499637 - 1500734 + | membrane spanning protein CLL_A1449 1500734 - 1501000 + | hypothetical protein CLL_A1450 1501025 - 1501321 + | propanediol utilization protein PduA CLL_A1451 1501348 - 1501653 + | propanediol utilization protein PduA TERM 1964 1502185 - 1502175 - g 74 -4 -5.27779 | opp_overlap 1502181 TCCAAGAGCAAAAAA TACT ATG AGTA AAACTCTTGATATTT CLL_A1452 1501729 - 1503219 + | aldehyde-alcohol dehydrogenase 2 TERM 1965 1503245 - 1503229 - f 89 -9.5 -4.22442 | opp_overlap 1503228 1503227 AAATAAACTAAACAA TCAGACT ATG AGTCTGA AATATATTTAAAGAA CLL_A1453 1503275 - 1505815 + | formate C-acetyltransferase TERM 1966 1505927 - 1505889 - f 82 -8.4 -4.4017 | gap 1, opp_overlap 1505900 TTAATTTTTATAAAA CTTG-TCACTAACATGA GTTAAA TCATGTTAGTGTGCAAG GAACATTTAAAACAT TERM 1967 1506053 - 1506043 - g 71 -4 -5.10064 | TTTAATATACAAAAA TACA ATA TGTA TGATGGACCAGGAAT CLL_A1454 1505983 - 1506936 + | benzylsuccinate synthase activating enzyme CLL_A1455 1506976 - 1507329 + | ethanolamine utilization protein EutS CLL_A1456 1507326 - 1507784 + | lysine-sensitive aspartokinase III CLL_A1457 1507784 - 1508452 + | hypothetical protein CLL_A1458 1508434 - 1509279 + | ethanolamine utilization protein EutJ CLL_A1459 1509295 - 1509597 + | microcompartments protein CLL_A1460 1509594 - 1509857 + | ethanolamine utilization protein EutN/carboxysome structural protein Ccml TERM 1968 1510774 - 1510755 - g 76 -4.4 -5.37345 | gap 1, opp_overlap 1510755 TTGAAGGACAAAAAA TTGCACAAC TAT GTTGT-CAA TGTAATTTATGTGAG CLL_A1461 1509875 - 1511203 + | respiratory-chain NADH dehydrogenase domain, 51 kda subunit CLL_A1462 1511205 - 1511753 + | microcompartments protein CLL_A1463 1511811 - 1512473 + | transcriptional regulator CLL_A1464 1512496 - 1513254 + | bacterial microcompartments family protein TERM 1969 1513345 - 1513332 - g 70 -6.7 -3.9644 | opp_overlap 1513332 TGTTCAATACAAGAA GCAAG AAAT CTTGC TCGCTTAGGAAAAGT TERM 1970 1513885 - 1513866 - g 88 -9.4 -4.09455 | ATGAAGAGTAAAGAA GTTGCTAT AATA ATAGCAAC AGGTGGTCCAGGAAT CLL_A1465 1513293 - 1514852 + | acetaldehyde dehydrogenase (acetylating) CLL_A1466 1514853 - 1515503 + | propanediol utilization protein TERM 1971 1515747 - 1515725 - g 77 -7.6 -4.12188 | overlap 1515709 GTAGGAGCTGTAAAA GCTGCTACTG ACG CAGGAGCTGC TGCTGCACAACGTGT CLL_A1467 1515560 - 1515850 + | propanediol utilization protein PduA TERM 1972 1515925 - 1515904 - f 100 -13.1 -3.84246 | opp_overlap 1515904 GCCTTAATTATGAAA CCCACGATA GAAA TATCGTGGG TTTTTATATATACAT TERM 1973 1515904 - 1515925 + F 100 -13.1 -5.04597 | opp_overlap 1515904 GCCTTAATTATGAAA CCCACGATA GAAA TATCGTGGG TTTTTATATATACAT CLL_A1468 1516119 - 1516508 + | iron-binding protein, hemerythrin TERM 1974 1516854 - 1516818 - f 77 -9 -3.31983 | gap 1, opp_overlap 1516819, overlap 1516819 1516821 CATAGAGTATATGAA TTACTAGCAT-TGGTTT ACCT AAACCACATGCTAGTAT TTTTTTGTTTTTTAT TERM 1975 1516853 - 1516819 - f 88 -12.5 -2.58708 | gap 1, opp_overlap 1516819, overlap 1516818 1516821 ATAGAGTATATGAAT TACTAGCAT-TGGTTT ACCT AAACCACATGCTAGTA TTTTTTTGTTTTTTA TERM 1976 1516819 - 1516853 + F 100 -12.5 -6.28401 | gap 1, opp_overlap 1516819 1516818 1516821 ATAGAGTATATGAAT TACTAGCAT-TGGTTT ACCT AAACCACATGCTAGTA TTTTTTTGTTTTTTA TERM 1977 1516851 - 1516821 - f 82 -10.7 -2.82786 | gap 1, opp_overlap 1516819, overlap 1516819 1516818 AGAGTATATGAATTA CTAGCAT-TGGTTT ACCT AAACCACATGCTAG TATTTTTTTGTTTTT CLL_A1469 1517010 - 1518404 + | xanthine/uracil permease family protein TERM 1978 1518431 - 1518454 + F 100 -9.7 -5.59564 | opp_overlap 1518431 ATTTAAATCATGAAA TCCACGATA TTAATT TATCGTGGA TTTTTTTACATTTCT TERM 1979 1518454 - 1518431 - f 86 -9.7 -3.89412 | opp_overlap 1518431 ATTTAAATCATGAAA TCCACGATA TTAATT TATCGTGGA TTTTTTTACATTTCT hypB 1518827 - 1519507 + | hydrogenase accessory protein HypB TERM 1980 1519890 - 1519878 - g 70 -2 -5.4251 | CGGATAGAGAAAAAA TTGA GAATT TCAA ACAAATAGGAGAAGC CLL_A1471 1519529 - 1522219 + | pyridine nucleotide-disulphide oxidoreductase family protein TERM 1981 1522288 - 1522270 - f 79 -7.4 -4.66347 | ATGAAAAAATATAAA GGGGGA TGTAAAG TCCCCC CCATAGATTTTTAAC CLL_A1472 1522328 - 1522669 + | hydrogenase nickel incorporation protein TERM 1982 1523219 - 1523239 + G 70 -6.9 -3.92143 | opp_overlap 1523218 1523223 CTAAGTCTTACAGAG CAGATTCTA CAG TAGAAACTG TTTATGAAGATTTTG CLL_A1473 1522720 - 1523742 + | putative iron chelate uptake ABC transporter, solute-binding protein CLL_A1474 1523742 - 1524824 + | Fe uptake system integral membrane protein CLL_A1475 1524824 - 1525660 + | iron chelate uptake ABC transporter, FeCT family, ATP-binding protein TERM 1983 1525678 - 1525735 + F 71 -7.2 -3.86194 | opp_overlap 1525700 1525717 1525718 1525720, overlap 1525686 AGTATAATTGAATTT GTTG-GATGGGGCTTTCTCATAATGCAT AAAA ATGCAATATGAG-AAGTCCCTTCTCTGC TTTATAGCAAAACTT TERM 1984 1525686 - 1525727 + F 100 -13.9 -3.66897 | opp_overlap 1525700 1525717 1525718 1525720, overlap 1525678 TGAATTTGTTGGATG GGGCTTTCTCATAATGCAT AAAA ATGCAATATGAGAAGTCCC TTCTCTGCTTTATAG TERM 1985 1526057 - 1526041 - g 74 -2.3 -5.72616 | ATGTATATAAAAAAA TGAGAAA TGA TTTTTCA GATAAATATAATTTA TERM 1986 1526531 - 1526548 + G 71 -7.1 -3.74224 | opp_overlap 1526531 1526543, overlap 1526543 TTATTTGAATGGAAA TAGGTAT TTAA ATACCTA TTTAGGTAATTTAAC TERM 1987 1526548 - 1526531 - g 71 -7.1 -3.76125 | opp_overlap 1526531 1526543, overlap 1526543 TTATTTGAATGGAAA TAGGTAT TTAA ATACCTA TTTAGGTAATTTAAC CLL_A1476 1525848 - 1526975 + | hypothetical protein TERM 1988 1526991 - 1527038 + T 100 -17.6 -4.14056 | opp_overlap 1526995 1527001, overlap 1526995 AATGATATAATTTTA TAAATATAAATACCATGATTAA AAGT TTAAGCATGGTATTTATATTTA TTTATACTTTAGACT TERM 1989 1527034 - 1526995 - T 100 -14 -3.94381 | opp_overlap 1526991 1526995, overlap 1527001 ATATAATTTTATAAA TATAAATACCATGATTAA AAGT TTAAGCATGGTATTTATA TTTATTTATACTTTA TERM 1990 1526995 - 1527034 + T 100 -14 -4.65032 | opp_overlap 1526995 1527001, overlap 1526991 ATATAATTTTATAAA TATAAATACCATGATTAA AAGT TTAAGCATGGTATTTATA TTTATTTATACTTTA TERM 1991 1527028 - 1527001 - T 82 -8.6 -4.40003 | opp_overlap 1526995 1526991, overlap 1526995 TTTTATAAATATAAA TACCATGATTAA AAGT TTAAGCATGGTA TTTATATTTATTTAT CLL_A1477 1528189 - 1527086 - | cold-shock deAd box protein a TERM 1992 1528118 - 1528133 + g 74 -4 -5.35815 | CTCTTGAATAGGAGT TGGAGT TTTA ATTCCA TTTTTATTTAGTATG TERM 1993 1528732 - 1528716 - g 73 -3 -5.38054 | gap 1, overlap 1528717 TTCTACAAAGAAAAA GGATTCG ATAA CGAA-CC AACAAGATGTGCAGC CLL_A1478 1528632 - 1528784 + | hypothetical protein TERM 1994 1528826 - 1528805 - f 73 -7.4 -4.07535 | opp_overlap 1528805 AATTGTTATAAATAA GACTATAG TTTAGG CTATAGTC TTTTTTTGTTATGTT TERM 1995 1528805 - 1528826 + F 100 -8.1 -5.94214 | opp_overlap 1528805 AATTGTTATAAATAA GACTATAGT TTAG GCTATAGTC TTTTTTTGTTATGTT CLL_A1479 1528946 - 1529728 + | hypothetical protein TERM 1996 1529799 - 1529759 - T 100 -21.7 -3.44792 | opp_overlap 1529763, overlap 1529763 AACATTAACTTATAA TAAATTTTCAAACTAAGTG TTG CACTTAGTTTGAAAATTTA TAAAATAGATAATCT TERM 1997 1529795 - 1529763 - T 100 -18.1 -4.35604 | opp_overlap 1529763, overlap 1529759 TTAACTTATAATAAA TTTTCAAACTAAGTG TTG CACTTAGTTTGAAAA TTTATAAAATAGATA TERM 1998 1529763 - 1529795 + T 100 -18.1 -3.89822 | opp_overlap 1529763 1529759 TTAACTTATAATAAA TTTTCAAACTAAGTG TTG CACTTAGTTTGAAAA TTTATAAAATAGATA CLL_A1480 1530083 - 1529862 - | hypothetical protein TERM 1999 1530366 - 1530347 - g 82 -5.2 -5.54192 | opp_overlap 1530347 AGTAAGTGAAAAAAA TATTAAAA AAAA TTTTAATA TTTATTATAGTTATA CLL_A1481 1530337 - 1531035 + | D-alanyl-D-alanine carboxypeptidase TERM 2000 1531280 - 1531268 - g 72 -6.3 -4.31 | GCAAAGTAAGAGAAA GGTAT AAT ATACC AATCCTCATGTTAAG TERM 2001 1531642 - 1531624 - g 74 -4 -5.27335 | overlap 1531641 GTTTGGAAAGAAAAA TATTATCA GTC TAATAATA CTGTTATGGTACATA CLL_A1482 1531057 - 1531749 + | regulatory protein VanR CLL_A1483 1531886 - 1532839 + | sensor histidine kinase CLL_A1484 1536610 - 1532903 - | collagenase TERM 2002 1536495 - 1536515 + g 70 -6.3 -4.19817 | ACGGAATAACTTTTA CTTGAATAA ATT TTATTTAAG TTTTCAGTAGATGAC TERM 2003 1537044 - 1537014 - H 82 -10.1 -3.07307 | opp_overlap 1537021, overlap 1537016 1537018 TAAAGTGTGACTTAA CATATTATTTTTA TATAC TAAAAATAATATG AAAAAAATTAAAGCA TERM 2004 1538209 - 1538197 - g 75 -3.5 -5.38497 | AGGGAAATGAAAAAA TTAAA TTA TTTAA AGAACAACTTATGTC CLL_A1485 1537227 - 1538420 + | hypothetical protein TERM 2005 1538400 - 1538445 + T 95 -12.3 -3.81414 | opp_overlap 1538401 1538402, overlap 1538402 GCATTTAATGTTAGA ACTGATTATAGAGTTTTTTAA GTAC TTAAAAAACTCTATAATCATA TTATTCATTAAAAAT TERM 2006 1538444 - 1538401 - T 100 -15.8 -3.36968 | opp_overlap 1538400 1538402, overlap 1538402 CATTTAATGTTAGAA CTGATTATAGAGTTTTTTAA GTAC TTAAAAAACTCTATAATCAT ATTATTCATTAAAAA TERM 2007 1538443 - 1538402 - T 100 -19.3 -2.6186 | opp_overlap 1538400 1538402, overlap 1538401 ATTTAATGTTAGAAC TGATTATAGAGTTTTTTAA GTAC TTAAAAAACTCTATAATCA TATTATTCATTAAAA TERM 2008 1538402 - 1538443 + T 100 -19.3 -3.49048 | opp_overlap 1538402 1538401, overlap 1538400 ATTTAATGTTAGAAC TGATTATAGAGTTTTTTAA GTAC TTAAAAAACTCTATAATCA TATTATTCATTAAAA TERM 2009 1538673 - 1538632 - T 100 -11.8 -4.07618 | opp_overlap 1538632 TCTTTAATAACTAAA CATAAGATGGTGCTGCAA AATGAA CTGCAACACCATTTTATG TTTTTATTTTTCTTC TERM 2010 1538632 - 1538673 + T 100 -11.1 -5.74684 | opp_overlap 1538632 TCTTTAATAACTAAA CATAAGATGGTGCTGCA AAATGAAC TGCAACACCATTTTATG TTTTTATTTTTCTTC CLL_A1486 1539696 - 1538677 - | acyltransferase family protein CLL_A1487 1539918 - 1541141 + | methyltransferase TERM 2011 1541169 - 1541209 + F 91 -8.6 -4.93365 | opp_overlap 1541166 1541169 TTACATAACAATTTA TAAGTCTATAAGTATTGA GTCAA TTTATGCTTATAGACTTA TTTTTAGTTATAGAA TERM 2012 1542377 - 1542391 + G 73 -4.3 -5.0133 | overlap 1542367 TTTGTTTGATTACTT CAAGT TTAAT ACTTG TTTTTTCAAAAAATA CLL_A1488 1541398 - 1542714 + | mate efflux family protein CLL_A1489 1542796 - 1543251 + | hypothetical protein TERM 2013 1543510 - 1543538 + G 73 -9.1 -2.66373 | overlap 1543514 AGTTTAACGACTATT TCAATGCTTAATT TTA AATTAAACATTGA TGACTTATTACCATT CLL_A1490 1543414 - 1544250 + | hypothetical protein TERM 2014 1544398 - 1544430 + F 100 -7.9 -5.8096 | AAATAGTAACCAGGA GCATAGAATTGTCTA AGT TAGGTGATTTTATGC TTTTTATTTTTTATG CLL_A1491 1544662 - 1547016 + | diguanylate cyclase/phosphodiesterase domain 2 TERM 2015 1547149 - 1547197 + T 100 -19.3 -5.12474 | opp_overlap 1547149 1547152, overlap 1547151 AATTAAAATTACGAA TGAGGGCTACATCTTAAAAATAT TTT ATATTTTTAAGATGTAGCCCAAA TTTTTATATATTATA TERM 2016 1547197 - 1547149 - T 100 -19.3 -3.39207 | opp_overlap 1547149 1547151, overlap 1547152 AATTAAAATTACGAA TGAGGGCTACATCTTAAAAATAT TTT ATATTTTTAAGATGTAGCCCAAA TTTTTATATATTATA TERM 2017 1547151 - 1547195 + T 100 -21.9 -2.77888 | opp_overlap 1547149 1547152, overlap 1547149 TTAAAATTACGAATG AGGGCTACATCTTAAAAATAT TTT ATATTTTTAAGATGTAGCCCA AATTTTTATATATTA TERM 2018 1547194 - 1547152 - T 100 -25.4 -2.84344 | opp_overlap 1547151 1547149, overlap 1547149 TAAAATTACGAATGA GGGCTACATCTTAAAAATAT TTT ATATTTTTAAGATGTAGCCC AAATTTTTATATATT CLL_A1492 1547427 - 1547245 - | hypothetical protein CLL_A1493 1547669 - 1548376 + | putative F pilin acetylation protein TERM 2019 1548368 - 1548391 + T 70 -6.2 -4.34859 | ATAAGTAGAGGATTG CTATTTTAGA TTAG TTTAAAATAG TTTATATATTTTAAT CLL_A1494 1549085 - 1548654 - | hypothetical protein TERM 2020 1549164 - 1549115 - H 72 -8.4 -3.24721 | overlap 1549147 AATATAAATTTAATA TTTTGCTAAATTATAACACA AACAGAAAAA TATGTTATAATTTAACAAAA GGTATTATAATATAG CLL_A1495 1549329 - 1549604 + | hypothetical protein CLL_A1496 1549658 - 1550239 + | hypothetical protein TERM 2021 1551066 - 1551038 - g 70 -5.5 -4.57912 | opp_overlap 1551039 GAAAGAACAAAAGAA TTAATAGAATTAT TAT ATAATCCAATTAA TGAGGATTCAAATAA CLL_A1497 1550378 - 1551724 + | glycosyl hydrolase, family 4 TERM 2022 1551899 - 1551927 + F 81 -5.5 -5.4251 | opp_overlap 1551899 1551909 ATTGACAATGAAAAA CTATTCAGAAT AAAAAAC ATTTTGAATAG TTTTTTATGTATGAA CLL_A1498 1552043 - 1554784 + | NtrC family Transcriptional regulator, ATPase domain TERM 2023 1554854 - 1554879 + F 70 -4.8 -4.7657 | opp_overlap 1554856, overlap 1554856 AGTGTACAAATAAGA AAGTGTGTAA TTGATT TTACACACTC TTTTTGAGATTTTTA TERM 2024 1554856 - 1554877 + F 71 -7.4 -3.97443 | opp_overlap 1554856, overlap 1554854 TGTACAAATAAGAAA GTGTGTAA TTGATT TTACACAC TCTTTTTGAGATTTT TERM 2025 1554877 - 1554856 - f 79 -7.4 -4.63048 | opp_overlap 1554856 1554854 TGTACAAATAAGAAA GTGTGTAA TTGATT TTACACAC TCTTTTTGAGATTTT CLL_A1499 1555071 - 1555382 + | PTS system, lactose/cellobiose-specific family, IIB component CLL_A1500 1555405 - 1555719 + | PTS system, lactose/cellobiose-specific family, IIA component CLL_A1501 1555802 - 1556695 + | ATPase family protein TERM 2026 1557437 - 1557427 - g 74 -2.6 -5.56573 | opp_overlap 1557427 ATAAATAAAGAAAAA TTAA TAA TTAA TATTGAATTTGATGA CLL_A1502 1556692 - 1557786 + | outer surface protein CLL_A1503 1557833 - 1559098 + | PTS system, lactose/cellobiose family IIC component TERM 2027 1559210 - 1559240 + F 100 -12.7 -6.00814 | opp_overlap 1559212, overlap 1559212 TAATTTATTTACAAA AAGCACCACAGAA TGTTT TTCTGTGGTGCTA TTTTTTTTGATTATT TERM 2028 1559238 - 1559212 - f 100 -15.3 -4.88067 | opp_overlap 1559210 1559212 ATTTATTTACAAAAA GCACCACAGAA TGTTT TTCTGTGGTGC TATTTTTTTTGATTA TERM 2029 1559212 - 1559238 + F 100 -15.3 -4.61485 | opp_overlap 1559212, overlap 1559210 ATTTATTTACAAAAA GCACCACAGAA TGTTT TTCTGTGGTGC TATTTTTTTTGATTA CLL_A1504 1559499 - 1560305 + | membrane protein CLL_A1505 1560371 - 1561018 + | alkaline phosphatase synthesis transcriptional regulatory proteinphoP CLL_A1506 1561008 - 1562381 + | Two component system histidine kinase CLL_A1507 1562417 - 1564723 + | putative lipoprotein TERM 2030 1564765 - 1564809 + TF 100 -16.1 -4.15249 | AATATTATTGTTTTA GAGGGGTTATTTATGTTTAAT TTT ATTAAGCATAAGTAGCTCCTC TTTACTTTAATGTTT CLL_A1508 1565142 - 1564987 - | hypothetical protein CLL_A1509 1565105 - 1566568 + | MDR-type permease TERM 2031 1566640 - 1566592 - fH 73 -7.2 -4.01786 | gap 1, opp_overlap 1566600 1566601 1566635, overlap 1566599 1566601 AAAGATAATAGCAAA TATAAAATA-GCTTATATCATTA GTAA TAATGGTATAAGCATTTTTTATA TAGATAAATTTTCCT TERM 2032 1566600 - 1566631 + FH 100 -8.2 -5.38047 | opp_overlap 1566599 1566592 1566601, overlap 1566601 TAGCAAATATAAAAT AGCTTATATCATTA GTAA TAATGGTATAAGCA TTTTTTATATAGATA TERM 2033 1566630 - 1566601 - fH 86 -9.5 -4.01747 | opp_overlap 1566600 1566601, overlap 1566599 1566592 AGCAAATATAAAATA GCTTATATCATTA GTAA TAATGGTATAAGC ATTTTTTATATAGAT TERM 2034 1566601 - 1566630 + FH 95 -11.7 -3.81744 | opp_overlap 1566601 1566599 1566592, overlap 1566600 AGCAAATATAAAATA GCTTATATCATTA GTAA TAATGGTATAAGC ATTTTTTATATAGAT TERM 2035 1566751 - 1566786 + FH 90 -7.1 -5.4251 | opp_overlap 1566751 1566750 1566754 AGCAATAGGTCAAAG TAAGCTCATGTCT AAATTTATCA AGATATGAGCTTA TTTTTTATGTATAAG TERM 2036 1566868 - 1566839 - fH 82 -2.4 -6.28401 | opp_overlap 1566839, overlap 1566831 TAAAAAATAAAAAAA TTTTAAGTAAAT AGTAGA ATTTATTTAAAA TTTAGCGTATAATAA TERM 2037 1566991 - 1567022 + FH 100 -8.8 -6.01369 | CAACAGGATATTTAA TACCTGTGGGACAG TATA TTGTTCTACGGGTA TTTTTTTATTCTTTG TERM 2038 1567113 - 1567095 - fH 100 -7.6 -5.33405 | overlap 1567105 GCTATCAAACAAAAA TTCTTAAA TAT TTTAAGAA TAAAAATGGAGGTAA TERM 2039 1567251 - 1567239 - g 87 -4.9 -5.75945 | opp_overlap 1567247 ATTCCTGAAAAAAAA GAAAA CTT TTTTC TGAAAATTTTAGAGG TERM 2040 1567297 - 1567311 + G 76 -7.2 -4.32131 | TGTTTTTACTTTTAC TTGTTG CAG CAACAA TTTACTTTATTTTAG TERM 2041 1567972 - 1567986 + G 72 -7.2 -4.06182 | overlap 1567971 TTCCAGAAGAATTTC CTGTTA TTT TAACAG TGTTTTTATCAATGG CLL_A1510 1567134 - 1569659 + | cation-transporting ATPase PacL TERM 2042 1569718 - 1569760 + T 80 -6.5 -5.04385 | gap 1, opp_overlap 1569721, overlap 1569721 ACAATATATAAAATA AAACCTACTGAA-TAGACTA TAAA TGGGCTATTTCAGTAGGTTC TTTTTTGAAAATATA TERM 2043 1569757 - 1569721 - T 80 -6 -5.24647 | gap 1, opp_overlap 1569718 1569721 ATATATAAAATAAAA CCTACTG-AATAGACTA TAAA TGGGCTATTTCAGTAGG TTCTTTTTTGAAAAT TERM 2044 1569721 - 1569757 + T 85 -8.2 -4.62085 | gap 1, opp_overlap 1569721, overlap 1569718 ATATATAAAATAAAA CCTACTGAA-TAGACTA TAAA TGGGCTATTTCAGTAGG TTCTTTTTTGAAAAT TERM 2045 1569827 - 1569844 + T 81 -5.7 -5.35365 | opp_overlap 1569827 AATTATATAACTCAA CATTAAA ATTT TTTAATG TTTTTATTATATTTT CLL_A1511 1570574 - 1569810 - | transcriptional regulator, DeoR family CLL_A1512 1570994 - 1571896 + | glycyl-radical enzyme activating family protein CLL_A1513 1571901 - 1574306 + | pyruvate formate-lyase CLL_A1514 1574319 - 1574987 + | fructose-6-phosphate aldolase 2 TERM 2046 1575174 - 1575141 - T 100 -15.6 -5.02074 | opp_overlap 1575131 1575144 1575147 TTATTTGTTAAAAAA TAATAAGCTGCAGA GAACTA TCTGCAGCTTATTA AGTATAACCATTTAT TERM 2047 1575144 - 1575171 + T 95 -12.9 -3.12847 | opp_overlap 1575141, overlap 1575131 1575147 TTTGTTAAAAAATAA TAAGCTGCAGA GAACTA TCTGCAGCTTA TTAAGTATAACCATT TERM 2048 1575147 - 1575168 + T 90 -10.2 -3.70773 | opp_overlap 1575141, overlap 1575144 1575131 GTTAAAAAATAATAA GCTGCAGA GAACTA TCTGCAGC TTATTAAGTATAACC CLL_A1515 1575508 - 1575299 - | hypothetical protein CLL_A1516 1576953 - 1575628 - | mate efflux family protein TERM 2049 1577027 - 1576979 - R 95 -7 -5.95539 | gap 1, opp_overlap 1576979 CTCCAAATAAAAAAA CATTCGAATGTTCATACCTTCAA TGGC CTAATGGTATGAA-ATACGAATG TTTGTAAAAGCATTT TERM 2050 1577222 - 1577182 - R 100 -13.6 -4.51196 | opp_overlap 1577186, overlap 1577184 TTCAAATTTAGAAAA GAGATTTTTCACAGGATA TTAAT TACCCTGTGAAAAATCTT AAACTTATAAATATA TERM 2051 1577220 - 1577184 - R 100 -16.2 -3.85911 | opp_overlap 1577186, overlap 1577182 CAAATTTAGAAAAGA GATTTTTCACAGGATA TTAAT TACCCTGTGAAAAATC TTAAACTTATAAATA TERM 2052 1577186 - 1577218 + r 85 -10.8 -3.11291 | opp_overlap 1577184 1577182 AATTTAGAAAAGAGA TTTTTCACAGGATA TTAAT TACCCTGTGAAAAA TCTTAAACTTATAAA CLL_A1517 1577441 - 1577295 - | hypothetical protein TERM 2053 1577676 - 1577728 + H 100 -11.1 -6.09196 | gap 1, opp_overlap 1577676 1577690 TGGTAAAGCAGGCAA GACCGAAATAAAAATGCATTTCTT TTAATT AAGAAATACATTTT-ATTTTGGTC TTTTTTTATTTTAAA TERM 2054 1577728 - 1577676 - H 90 -11.1 -3.1634 | gap 1, opp_overlap 1577676, overlap 1577690 TGGTAAAGCAGGCAA GACCGAAATAAAAATGCATTTCTT TTAATT AAGAAATACATT-TTATTTTGGTC TTTTTTTATTTTAAA TERM 2055 1577715 - 1577690 - H 81 -5.6 -5.31519 | opp_overlap 1577676, overlap 1577676 AGACCGAAATAAAAA TGCATTTCTT TTAATT AAGAAATACA TTTTATTTTGGTCTT TERM 2056 1578917 - 1578905 - g 80 -5.5 -5.2696 | overlap 1578907 TTAAAACTTAAAAAA CCGCT AAT AGCAG CCATGATAGGTGGAG CLL_A1518 1577762 - 1579642 + | PTS system, beta-glucoside-specific IIABC component TERM 2057 1579690 - 1579662 - f 100 -11.9 -5.49569 | opp_overlap 1579662 TATTAATATAAAAAA TCAGACTTTGAAA AAA TATCAAAGTCTGA TTTCACACTTAAAAT TERM 2058 1579662 - 1579690 + F 95 -11.9 -3.60971 | opp_overlap 1579662 TATTAATATAAAAAA TCAGACTTTGAAA AAA TATCAAAGTCTGA TTTCACACTTAAAAT CLL_A1519 1579730 - 1581142 + | beta-glucosidase CLL_A1520 1581182 - 1582015 + | transcription antiterminator LicT TERM 2059 1582131 - 1582165 + F 90 -6.6 -5.77571 | opp_overlap 1582140 TTCATAACGTTAAAA GTGAATGTATGATTAT ATA ATTATCATGTGTTCAC TTTTTGTTTTTTAAT CLL_A1521 1582471 - 1582668 + | hypothetical protein CLL_A1522 1582778 - 1583425 + | nitrite reductase TERM 2060 1583517 - 1583556 + F 100 -17.6 -4.30719 | opp_overlap 1583508 1583517 1583519 ATAATAGTTAGTTAA TATCTCTAATACATTGAA TAAA TTCAATGTATTAGAGGTA TTTCTTATGCAAAGA TERM 2061 1583556 - 1583517 - f 100 -15.4 -3.10255 | opp_overlap 1583517, overlap 1583508 1583519 ATAATAGTTAGTTAA TATCTCTAATACATTGAA TAAA TTCAATGTATTAGAGGTA TTTCTTATGCAAAGA TERM 2062 1583554 - 1583519 - f 95 -13.6 -3.10622 | opp_overlap 1583517, overlap 1583517 1583508 AATAGTTAGTTAATA TCTCTAATACATTGAA TAAA TTCAATGTATTAGAGG TATTTCTTATGCAAA TERM 2063 1583840 - 1583805 - f 72 -7.9 -3.54676 | opp_overlap 1583810, overlap 1583810 1583815 ATTTAGTCAAATGAA TTAAAGTAAACTTAT AAGGAA ATAAGTTTACTTTTA AGCATGGATGAAAAT TERM 2064 1583835 - 1583810 - f 77 -7.8 -4.04394 | opp_overlap 1583810, overlap 1583805 1583815 GTCAAATGAATTAAA GTAAACTTAT AAGGAA ATAAGTTTAC TTTTAAGCATGGATG TERM 2065 1583810 - 1583835 + F 77 -7.8 -4.11692 | opp_overlap 1583810 1583805 1583815 GTCAAATGAATTAAA GTAAACTTAT AAGGAA ATAAGTTTAC TTTTAAGCATGGATG CLL_A1523 1583916 - 1584194 + | hypothetical protein CLL_A1524 1584335 - 1584877 + | hypothetical protein TERM 2066 1584928 - 1584878 - f 100 -13.1 -3.4791 | opp_overlap 1584882 1584886, overlap 1584882 1584886 GATAAAATATATTAA TAAATAAAGAGATTGAATTTTAT GATAT ATAATATTCAGTCTCTTTATTTA TGTGGGAATCATAAT TERM 2067 1584924 - 1584882 - f 89 -9.5 -4.33803 | opp_overlap 1584882 1584886, overlap 1584878 1584886 AAATATATTAATAAA TAAAGAGATTGAATTTTAT GATAT ATAATATTCAGTCTCTTTA TTTATGTGGGAATCA TERM 2068 1584882 - 1584924 + F 100 -12.4 -4.04206 | opp_overlap 1584882 1584878 1584886, overlap 1584886 AAATATATTAATAAA TAAAGAGATTGAATTTTATG ATA TATAATATTCAGTCTCTTTA TTTATGTGGGAATCA TERM 2069 1584886 - 1584920 + F 89 -8.8 -4.62441 | opp_overlap 1584882 1584878 1584886, overlap 1584882 ATATTAATAAATAAA GAGATTGAATTTTATG ATA TATAATATTCAGTCTC TTTATTTATGTGGGA TERM 2070 1584920 - 1584886 - f 74 -5.9 -4.71791 | opp_overlap 1584886 1584882, overlap 1584882 1584878 ATATTAATAAATAAA GAGATTGAATTTTAT GATAT ATAATATTCAGTCTC TTTATTTATGTGGGA TERM 2071 1585142 - 1585127 - f 88 -4.8 -5.82036 | ACAACAAATAAAAAA CATTTA ATAG TAAATG ATAGTATGTAGTGGA CLL_A1525 1585199 - 1585969 + | polysaccharide deacetylase TERM 2072 1586017 - 1585963 - T 100 -7.8 -5.77677 | opp_overlap 1585961 1585964 1585977, overlap 1585964 1585966 TAAAATAAGAAAAAA TTATTAATAAAAAAGACATGC-CA AAAATAAGA TGAGCATGTCTTTTTTATTAA-AA TATTATTGATTGATC TERM 2073 1585964 - 1586017 + T 83 -9.4 -3.50119 | gap 1, opp_overlap 1585963 1585964 1585966, overlap 1585961 1585977 AAAATAAGAAAAAAT TATTAATAAAAAAGACATGC-CA AAAATAAGA TGAGCATGTCTTTTTTATTAAAA TATTATTGATTGATC TERM 2074 1586017 - 1585964 - T 86 -9.4 -4.02946 | gap 1, opp_overlap 1585964 1585961 1585977, overlap 1585963 1585966 AAAATAAGAAAAAAT TATTAATAAAAAAGACATGC-CA AAAATAAGA TGAGCATGTCTTTTTTATTAAAA TATTATTGATTGATC TERM 2075 1586015 - 1585966 - T 95 -12 -3.54636 | gap 1, opp_overlap 1585964 1585961 1585977, overlap 1585963 1585964 AATAAGAAAAAATTA TTAATAAAAAAGACATGC-CA AAAATAAGA TGAGCATGTCTTTTTTATTAA AATATTATTGATTGA CLL_A1526 1586331 - 1586020 - | hypothetical protein TERM 2076 1586566 - 1586545 - H 75 -8.1 -3.64822 | opp_overlap 1586531 1586545 1586544, overlap 1586524 1586546 ATCGGTTCAGTGAAA CGGTTAACT AGAA AGTTAACCA ATATTTAATTAGATG TERM 2077 1586565 - 1586546 - H 76 -9.4 -2.78679 | opp_overlap 1586531 1586545 1586544, overlap 1586524 1586545 TCGGTTCAGTGAAAC GGTTAACT AGAA AGTTAACC AATATTTAATTAGAT rbsK 1586596 - 1587525 + | ribokinase CLL_A1528 1587531 - 1587926 + | high affinity ribose transport protein RbsD CLL_A1529 1587941 - 1589443 + | ribose import ATP-binding protein RbsA CLL_A1530 1589460 - 1590395 + | ribose transport system permease protein RbsC TERM 2078 1590986 - 1590962 - g 71 -7.3 -3.73859 | TAGTATAATAGATAA TGACACTAAAT TTA ACTTAGTATCA AGTCAGGCTGCTGAT CLL_A1531 1590420 - 1591322 + | D-ribose-binding protein CLL_A1532 1591374 - 1592369 + | transcriptional regulator, LacI family TERM 2079 1592375 - 1592416 + T 100 -11.3 -5.60689 | opp_overlap 1592375 TGTAAAATAAAAAAA TATCCATATTAAAATGA GCAAAAAA TCATTTTGATATGGATA TTTTTTATTCTCTAG TERM 2080 1592416 - 1592375 - T 100 -9.1 -6.09196 | opp_overlap 1592375 TGTAAAATAAAAAAA TATCCATATTAAAATGA GCAAAAAA TCATTTTGATATGGATA TTTTTTATTCTCTAG TERM 2081 1592576 - 1592603 + T 100 -10.2 -4.57581 | opp_overlap 1592578 AGTCTCTTTTTACTA TAGTTATAATTA AATT TAATTATAACTA TTTGTTGTTTAGCAT CLL_A1533 1593029 - 1592601 - | hypothetical protein pcp 1593670 - 1593029 - | pyroglutamyl-peptidase I TERM 2082 1593850 - 1593798 - R 71 -7.3 -4.00468 | opp_overlap 1593805, overlap 1593800 1593805 AGCATAATTTATAAA TAGTTAAGCTTATATATAGAATGCA AAA TACAATCTATATATAAGCTTATAAA CACTTTAGCATTAAG TERM 2083 1593848 - 1593800 - R 89 -9.9 -3.58879 | opp_overlap 1593805, overlap 1593798 1593805 CATAATTTATAAATA GTTAAGCTTATATATAGAATGCA AAA TACAATCTATATATAAGCTTATA AACACTTTAGCATTA TERM 2084 1593805 - 1593843 + r 95 -12 -3.32294 | opp_overlap 1593800 1593798 1593805 TTTATAAATAGTTAA GCTTATATATAGAATGCA AAA TACAATCTATATATAAGC TTATAAACACTTTAG TERM 2085 1593843 - 1593805 - R 100 -14.2 -3.26719 | opp_overlap 1593805, overlap 1593800 1593798 TTTATAAATAGTTAA GCTTATATATAGAATGCA AAA TACAATCTATATATAAGC TTATAAACACTTTAG TERM 2086 1594070 - 1594037 - R 70 -4.9 -4.84492 | gap 1, overlap 1594038 GTAATTATAATAAAA CTTAGATTATTTTACA ATA CG-AAAATAATCTAAA AAAGTATATACATTG CLL_A1535 1595074 - 1594145 - | permease CLL_A1536 1595764 - 1595093 - | permease TERM 2087 1595180 - 1595168 - G 80 -6.3 -4.85653 | opp_overlap 1595178, overlap 1595173 TATACACAAAATAAA TGCAA CTA TTGCA ACTGGTACAGATGCT TERM 2088 1596877 - 1596850 - g 70 -5 -4.7458 | AGGAGAAGAAATAAA TATTGCAACTTC TAAG GAAATTTCAATA AAAAATCTTGCAAGT CLL_A1537 1596131 - 1597120 + | NAD-dependent epimerase/dehydratase TERM 2089 1598065 - 1598087 + G 73 -8.6 -3.05268 | opp_overlap 1598062 1598063 AAAATAAAAGGACTA TCATTACTAA AAT TTAGTGATGA TGTTGAACCTAATTA CLL_A1538 1597198 - 1598367 + | DegT/DnrJ/EryC1/StrS aminotransferase CLL_A1539 1598635 - 1599342 + | N-acylneuraminate cytidylyltransferase CLL_A1540 1599335 - 1600477 + | hypothetical protein TERM 2090 1600623 - 1600587 - f 78 -9.9 -2.53208 | opp_overlap 1600586 1600591 1600601, overlap 1600586 1600591 1600605 AAATTATAAAAGTAG TAAATATGAAAATAT AAATTAA ATATTTTCATATTTA ATTAAATTTCATAAT CLL_A1541 1600662 - 1601687 + | hypothetical protein CLL_A1542 1601808 - 1602113 + | hypothetical protein CLL_A1543 1602354 - 1602803 + | transcriptional regulator, MarR family TERM 2091 1602801 - 1602849 + T 100 -14.6 -3.32471 | gap 1, opp_overlap 1602804 1602844, overlap 1602804 1602844 ATTAATTCTAATGAG TAATACTTAATGTAATTTAGTTA TATT TAA-TAAATTACATTAAGTATTA TATTATGGATTTCTT TERM 2092 1602804 - 1602846 + T 95 -11.9 -3.78242 | gap 1, opp_overlap 1602804 1602844, overlap 1602801 1602844 AATTCTAATGAGTAA TACTTAATGTAATTTAGTTA TATT TAA-TAAATTACATTAAGTA TTATATTATGGATTT TERM 2093 1602846 - 1602804 - T 93 -11.9 -3.28041 | gap 1, opp_overlap 1602804 1602801 1602844, overlap 1602844 AATTCTAATGAGTAA TACTTAATGTAATTTAGTTA TATT TAA-TAAATTACATTAAGTA TTATATTATGGATTT TERM 2094 1602851 - 1602892 + T 85 -11.9 -2.55551 | opp_overlap 1602844 1602852, overlap 1602844 TACATTAAGTATTAT ATTATGGATTTCTTAGATT TTTA AAACTAAGAAATCCATAAG TAAATTAGCCTTGTA TERM 2095 1602891 - 1602852 - T 100 -15.4 -2.87404 | opp_overlap 1602851 1602844, overlap 1602844 ACATTAAGTATTATA TTATGGATTTCTTAGATT TTTA AAACTAAGAAATCCATAA GTAAATTAGCCTTGT CLL_A1544 1603415 - 1602897 - | flavodoxin-like fold domain protein TERM 2096 1603699 - 1603738 + H 76 -9.6 -2.91912 | opp_overlap 1603700 GGTATTAAACATTAA ATTTAAGTTACTGGAATT AATA AATTACAGTAACTTAAAA TATGTAACTACCTGC TERM 2097 1603737 - 1603700 - H 100 -13.1 -4.02719 | opp_overlap 1603699 GTATTAAACATTAAA TTTAAGTTACTGGAATT AATA AATTACAGTAACTTAAA ATATGTAACTACCTG TERM 2098 1603895 - 1603881 - g 79 -5 -5.42265 | opp_overlap 1603883, overlap 1603883 GTAAATTACAAAAAA CAGTTG ATA CAACTA GTTGGAATTTAGTAT CLL_A1545 1603802 - 1604140 + | hypothetical protein TERM 2099 1604214 - 1604181 - f 100 -8.3 -5.5112 | opp_overlap 1604186, overlap 1604182 TTGATTAATAAAAAA GGAGAGATACAGTAT ATTT ATACTGTATCTTTCT GTGAATATAGGAGGT TERM 2100 1604213 - 1604182 - f 100 -11.8 -3.89587 | opp_overlap 1604186, overlap 1604181 TGATTAATAAAAAAG GAGAGATACAGTAT ATTT ATACTGTATCTTTC TGTGAATATAGGAGG TERM 2101 1604186 - 1604209 + F 100 -11.2 -4.07868 | opp_overlap 1604182 1604181 TAATAAAAAAGGAGA GATACAGTAT ATTT ATACTGTATC TTTCTGTGAATATAG TERM 2102 1604953 - 1604941 - g 72 -3.4 -5.30686 | AACACTTATAAAAAA TGGT ATAAA ACCA GATTTAGTAGTATCT CLL_A1546 1604234 - 1605958 + | hypothetical protein CLL_A1547 1606014 - 1606187 + | hypothetical protein TERM 2103 1606328 - 1606314 - g 81 -2.2 -5.96219 | overlap 1606299 TAGTTATAAAAAAAA TTACAA CTA TTATAA AAGGAAATGTATATA CLL_A1548 1606283 - 1606522 + | hypothetical protein CLL_A1549 1606539 - 1606847 + | hypothetical protein CLL_A1550 1606882 - 1607172 + | hypothetical protein TERM 2104 1607180 - 1607198 + F 95 -5.3 -6.04324 | opp_overlap 1607175 1607180 ATATGTAAAAGAAAA GGAACTG TTTAT CAGTTTC TTTTTTATTTTTTGG CLL_A1551 1607255 - 1608298 + | nucleotidyl transferase CLL_A1552 1609069 - 1608560 - | putative acetyltransferase TERM 2105 1609121 - 1609092 - H 75 -8.1 -3.50853 | opp_overlap 1609091 1609089 1609092 1609109 1609111, overlap 1609100 1609103 1609107 GTCCTCCAATCATAA TCTAATAAGAATA CATA TATTCTAATTAGA ATTATATATTTCTCA TERM 2106 1609146 - 1609107 - H 74 -8.2 -3.35255 | opp_overlap 1609092 1609091 1609089 1609109 1609111, overlap 1609100 1609092 1609103 TCTAATAAGAATACA TATATTCTAATTAGAATT ATAT ATTTCTCATTAGAATATA ATATGAAAGATAATA CLL_A1553 1609265 - 1610410 + | UDP-N-acetylglucosamine 2-epimerase CLL_A1554 1610400 - 1611074 + | GlcNAc-PI de-N-acetylase family TERM 2107 1611498 - 1611512 + G 75 -7.2 -4.18197 | opp_overlap 1611498 1611497 TTTAGATATAGAAAT GTATAG TTG CTATAC TTTTAAGTCAGAACT CLL_A1555 1611088 - 1612041 + | hypothetical protein CLL_A1556 1612208 - 1613212 + | spore coat polysaccharide biosynthesis protein SpsE TERM 2108 1613245 - 1613285 + T 72 -7.7 -3.53811 | TTTGTTTAAACATGT GTTGATATATGCAATGTCA TTT TGTTTATGCATATATCAAC TTTAAAAAACATAAC CLL_A1557 1613811 - 1613356 - | hypothetical protein CLL_A1558 1614252 - 1613830 - | hypothetical Membrane Spanning Protein CLL_A1559 1614414 - 1614776 + | hypothetical protein TERM 2109 1614805 - 1614832 + F 95 -9.3 -4.84311 | opp_overlap 1614805 TCACAAAATTAATTA GCACTTACTTA GAAAAA TAAGTAGGTGC TTTTATTATATAAAA CLL_A1560 1614992 - 1615678 + | cNMP-binding regulatory protein TERM 2110 1615724 - 1615696 - T 100 -13.3 -4.21351 | opp_overlap 1615697 1615702, overlap 1615697 1615702 AAATATTTGAATAAA TGAAAAGGTAGCA TAT TGCTACCTTTTCT GCTATTAAAAATTAT TERM 2111 1615723 - 1615697 - T 100 -16.8 -3.11726 | opp_overlap 1615697 1615702, overlap 1615696 1615702 AATATTTGAATAAAT GAAAAGGTAGCA TAT TGCTACCTTTTC TGCTATTAAAAATTA TERM 2112 1615697 - 1615723 + T 100 -16.8 -2.74999 | opp_overlap 1615697 1615696 1615702, overlap 1615702 AATATTTGAATAAAT GAAAAGGTAGCA TAT TGCTACCTTTTC TGCTATTAAAAATTA TERM 2113 1615718 - 1615702 - T 100 -10.9 -4.67942 | opp_overlap 1615697 1615702, overlap 1615697 1615696 TTGAATAAATGAAAA GGTAGCA TAT TGCTACC TTTTCTGCTATTAAA TERM 2114 1615702 - 1615718 + T 100 -10.9 -4.55023 | opp_overlap 1615702 1615697 1615696, overlap 1615697 TTGAATAAATGAAAA GGTAGCA TAT TGCTACC TTTTCTGCTATTAAA CLL_A1561 1616695 - 1615736 - | putative cation antiporter TERM 2115 1616920 - 1616870 - H 100 -14.4 -5.74288 | opp_overlap 1616870 1616871, overlap 1616871 ATAAAGAATAAAAAA TGAGACCCATAGATAACATATT ATTAATA AATATGCTATCTATGAGTCTCG TTTATTAAGATAATA TERM 2116 1616870 - 1616920 + H 100 -12.2 -4.18934 | opp_overlap 1616870 1616871, overlap 1616871 ATAAAGAATAAAAAA TGAGACCCATAGATAACATATT ATTAATA AATATGCTATCTATGAGTCTCG TTTATTAAGATAATA TERM 2117 1616919 - 1616871 - H 100 -17.9 -4.00912 | opp_overlap 1616870 1616871, overlap 1616870 TAAAGAATAAAAAAT GAGACCCATAGATAACATATT ATTAATA AATATGCTATCTATGAGTCTC GTTTATTAAGATAAT TERM 2118 1616871 - 1616919 + H 95 -13.5 -3.10878 | opp_overlap 1616871 1616870, overlap 1616870 TAAAGAATAAAAAAT GAGACCCATAGATAACATATT ATTAATA AATATGCTATCTATGAGTCTC GTTTATTAAGATAAT CLL_A1562 1617294 - 1618160 + | oxygen-independent coproporphyrinogen III oxidase, Fe-S oxidoreductase TERM 2119 1618890 - 1618864 - g 78 -7.4 -4.44667 | opp_overlap 1618850 TGCTTTAATAAGAAA GCTTTTAAAAGA AAC TCTTACAAAAGC AGGTTTTACGAACTT CLL_A1563 1618313 - 1619215 + | chemotaxis protein CheV TERM 2120 1619223 - 1619266 + F 89 -12.2 -2.91429 | gap 1, opp_overlap 1619228, overlap 1619228 GCAAATAGTTTGATA AAAAAGACAGAAAAGATGATT TAA AAT-ATCTTTTCTGTCTTTTA TATGTAGAAATTTTG TERM 2121 1619261 - 1619228 - f 100 -12.1 -5.252 | gap 1, opp_overlap 1619223 1619228 TAGTTTGATAAAAAA GACAGAAAAGATGATT TAA AAT-ATCTTTTCTGTC TTTTATATGTAGAAA TERM 2122 1619228 - 1619261 + F 100 -12.1 -4.60797 | gap 1, opp_overlap 1619228, overlap 1619223 TAGTTTGATAAAAAA GACAGAAAAGATGATT TAA AAT-ATCTTTTCTGTC TTTTATATGTAGAAA CLL_A1564 1619541 - 1620725 + | methyltransferase TERM 2123 1620820 - 1620790 - f 95 -9.2 -4.8269 | opp_overlap 1620790 TATAATTATTAAAAA TAGAAAGTAGACTT TAG AAGCTTACTTTCTA TTTTTGTTGTTTGTT TERM 2124 1620790 - 1620820 + F 100 -9.2 -5.44198 | opp_overlap 1620790 TATAATTATTAAAAA TAGAAAGTAGACTT TAG AAGCTTACTTTCTA TTTTTGTTGTTTGTT CLL_A1565 1620912 - 1621454 + | hypothetical protein TERM 2125 1621549 - 1621581 + T 100 -13.8 -2.91264 | opp_overlap 1621549 1621554, overlap 1621554 GTTAATTGTTATAGA GTTAATACTGAATT GTGAA AATTCAGTATTAAC TCTATAACTAAAGAC TERM 2126 1621581 - 1621549 - T 100 -13.8 -2.89742 | opp_overlap 1621549 1621554, overlap 1621554 GTTAATTGTTATAGA GTTAATACTGAATT GTGAA AATTCAGTATTAAC TCTATAACTAAAGAC CLL_A1566 1621775 - 1621629 - | hypothetical protein TERM 2127 1621872 - 1621832 - R 78 -6.5 -4.82901 | opp_overlap 1621834 1621839 TTTTCCTTAGAAAAA TAATATATACATTACAT TTAATTT AAGTAATGTATATACTA ATTAATAAAAAAGTT CLL_A1567 1622722 - 1621874 - | AraC-type DNA-binding domain-containing protein, transcriptional regulator TERM 2128 1622631 - 1622642 + g 70 -3 -5.35365 | overlap 1622627 TCATGGTAGTGGAAT TCAA ATTC TTGA TTTTTCTTATCTTTT TERM 2129 1623500 - 1623525 + G 70 -6.2 -4.08945 | opp_overlap 1623489 1623486 1623499 AGTATAATAATGTAT TATGCACCAA TTGGGC TTGGAGCATA TTTTGCAAGCATAAT CLL_A1568 1622921 - 1624141 + | H+/sodium:glutamate symporter CLL_A1569 1624285 - 1625100 + | GTP pyrophosphokinase TERM 2130 1625684 - 1625660 - g 76 -4.3 -5.21683 | overlap 1625662 1625663 1625667 1625675 AGCTAAAAAAAGAAA CATTGAAGCAT TAG ATGCTCCAGTA TCAGGTGGAGATACT TERM 2131 1625681 - 1625663 - g 70 -8.2 -3.10203 | overlap 1625662 1625660 1625667 1625675 TAAAAAAAGAAACAT TGAAGCAT TAG ATGCTCCA GTATCAGGTGGAGAT TERM 2132 1626151 - 1626137 - g 72 -5.7 -4.52873 | opp_overlap 1626144 TTTGGATAAAAATAA CCTAG GGGAG CTAGG AACTCAAGCTCTTAT CLL_A1570 1625322 - 1626194 + | 2-hydroxy-3-oxopropionate reductase TERM 2133 1626225 - 1626271 + T 87 -6.3 -5.74086 | gap 1, opp_overlap 1626225, overlap 1626262 ACACATTTATTAAAA CTACTTCTTGGAAATA-TTTTG TTAT TAAAATTATTTCTAAAAAGTAG TTTTTTATTTAGTTT TERM 2134 1626271 - 1626225 - T 70 -6.2 -4.3014 | opp_overlap 1626225 1626262 ACACATTTATTAAAA CTACTTCTTGGAAATATTTT GTTATTA AAATTATTTCTAAAAAGTAG TTTTTTATTTAGTTT CLL_A1571 1627432 - 1626425 - | cysteine synthase TERM 2135 1627219 - 1627229 + g 71 -4 -5.18371 | overlap 1627207 1627204 CACTAGTTGTTTCAA CTAT AGT ATAG TTTTGTTTTATAGAA TERM 2136 1628660 - 1628633 - g 71 -2.8 -5.48825 | GATTAGTGAAAAAAA TGCTAATCAATA TATT TATTCTTTAGCA AGTAAATATAATACT CLL_A1572 1627845 - 1629233 + | hypothetical protein TERM 2137 1629299 - 1629344 + T 88 -6.6 -5.48213 | gap 2, opp_overlap 1629290 1629307, overlap 1629301 1629307 AAAAGTTATTGTAAA TATAAT--AATATCCCATAGGA AAAA TCCTATGGGATATTTAATTCTA TTTTTGTTTTAAATA TERM 2138 1629301 - 1629339 + T 95 -9.9 -4.24385 | gap 1, opp_overlap 1629307, overlap 1629299 1629307 AAGTTATTGTAAATA TAATAATATCCCATAGGA AAAA TCCTATGGGATATT-TAA TTCTATTTTTGTTTT TERM 2139 1629334 - 1629307 - T 100 -15.8 -4.03586 | opp_overlap 1629307 1629301 1629299 TTGTAAATATAATAA TATCCCATAGGA AAAA TCCTATGGGATA TTTAATTCTATTTTT TERM 2140 1629307 - 1629334 + T 100 -15.8 -4.15267 | opp_overlap 1629307, overlap 1629301 1629299 TTGTAAATATAATAA TATCCCATAGGA AAAA TCCTATGGGATA TTTAATTCTATTTTT alr 1630602 - 1629442 - | alanine racemase CLL_A1574 1632189 - 1630729 - | GntR-family transcriptional regulator CLL_A1575 1632470 - 1633852 + | hypothetical protein TERM 2141 1633920 - 1633887 - f 90 -9.8 -3.78775 | opp_overlap 1633893, overlap 1633892 TTTGTGATTATTAAA TAAAAGCGGATAAC AAATAG GTTATCCGTTTTTA GACCTTAAGGTAGTT TERM 2142 1633915 - 1633892 - f 75 -5.3 -4.95484 | opp_overlap 1633893, overlap 1633887 GATTATTAAATAAAA GCGGATAAC AAATAG GTTATCCGT TTTTAGACCTTAAGG TERM 2143 1633893 - 1633914 + F 89 -8.8 -4.62471 | opp_overlap 1633892 1633887 ATTATTAAATAAAAG CGGATAAC AAATAG GTTATCCG TTTTTAGACCTTAAG CLL_A1576 1633996 - 1634283 + | hypothetical protein CLL_A1577 1634299 - 1635255 + | membrane spanning protein TERM 2144 1635387 - 1635353 - f 72 -8.2 -3.254 | overlap 1635340 1635356 TATTTATTCATAACA TAATTATAAACAAAAA TTA TTACTGTTTATAATTA ACAAATAATATGTTT TERM 2145 1635804 - 1635786 - g 72 -6 -4.57304 | ACCTAATCAAATAAA TGTAGCCA GAT TTGCTACA TATGAAATACTTTTA CLL_A1578 1635427 - 1635915 + | hypothetical protein TERM 2146 1635940 - 1635974 + T 100 -19 -5.00467 | opp_overlap 1635940 GTTGATATAACGAAA TCACCTATTACTAAAA ATA TTTTAGTAATAGGTGA TTTTATTGTTATTAA TERM 2147 1635974 - 1635940 - T 100 -19 -4.04174 | opp_overlap 1635940 GTTGATATAACGAAA TCACCTATTACTAAAA ATA TTTTAGTAATAGGTGA TTTTATTGTTATTAA CLL_A1579 1636734 - 1636000 - | transcriptional regulatory protein udp 1637424 - 1638206 + | uridine phosphorylase TERM 2148 1638955 - 1638969 + G 75 -7.2 -4.258 | ATACACAGCATTAGG TATTCC GAT GGAATA TTTATTGATAGCTAG CLL_A1581 1638383 - 1639585 + | nucleoside permease NupC TERM 2149 1639677 - 1639620 - f 100 -12.7 -4.87052 | gap 1, opp_overlap 1639627 1639637 1639675, overlap 1639622 1639630 1639670 TATAAATTAATAAAA TTTTA-CATTATCTTAAAGTTATAAAGA AAA TCTTTATAACTTTAAGATAATTCTATAA AATTTATTTTAAATT TERM 2150 1639674 - 1639622 - f 100 -14.7 -2.68736 | opp_overlap 1639627 1639637, overlap 1639620 1639630 1639670 TAAATTAATAAAATT TTACATTATCTTAAAGTTATAAAGA AAA TCTTTATAACTTTAAGATAATTCTA TAAAATTTATTTTAA TERM 2151 1639627 - 1639669 + F 100 -21.2 -3.54051 | opp_overlap 1639622 1639620 1639630, overlap 1639637 TAATAAAATTTTACA TTATCTTAAAGTTATAAAGA AAA TCTTTATAACTTTAAGATAA TTCTATAAAATTTAT TERM 2152 1639666 - 1639630 - f 100 -18.5 -2.66481 | opp_overlap 1639627 1639637, overlap 1639622 1639620 TAAAATTTTACATTA TCTTAAAGTTATAAAGA AAA TCTTTATAACTTTAAGA TAATTCTATAAAATT TERM 2153 1639637 - 1639659 + F 91 -10.8 -3.64609 | opp_overlap 1639630 1639622 1639620, overlap 1639627 TTACATTATCTTAAA GTTATAAAGA AAA TCTTTATAAC TTTAAGATAATTCTA TERM 2154 1639935 - 1639896 - g 82 -8.2 -4.51097 | opp_overlap 1639897, overlap 1639897 TGAATCAGTAGAAAA GTTTAATATACCTAATTT AGAA AAACTAGGTATATCAAAT TTACATCCTATAAAA TERM 2155 1639934 - 1639897 - g 95 -11.7 -3.29935 | opp_overlap 1639897, overlap 1639896 GAATCAGTAGAAAAG TTTAATATACCTAATTT AGAA AAACTAGGTATATCAAA TTTACATCCTATAAA TERM 2156 1639897 - 1639934 + G 71 -7.3 -3.70149 | opp_overlap 1639897 1639896 GAATCAGTAGAAAAG TTTAATATACCTAATTT AGAA AAACTAGGTATATCAAA TTTACATCCTATAAA deoB 1639768 - 1640958 + | phosphopentomutase CLL_A1583 1641069 - 1641884 + | transketolase CLL_A1584 1641897 - 1642823 + | transketolase TERM 2157 1643492 - 1643471 - g 70 -7.5 -3.43511 | opp_overlap 1643475, overlap 1643469 1643475 AATAGCAGCGAAACA TAAAGTTAA TGCA TTAACTTTA TTAACAGTAAGTGAT deoD 1642896 - 1643603 + | purine nucleoside phosphorylase TERM 2158 1643612 - 1643658 + F 100 -14.8 -4.41616 | opp_overlap 1643608 1643613 1643614, overlap 1643614 TTTATAAGAAATTAA AGTTCTAAGTTTTAGGTGAAGT AAT GCTTCATCTAAAACTTAGAATA TTTGTTTAAGCAAGT TERM 2159 1643657 - 1643613 - f 100 -13.2 -4.24422 | opp_overlap 1643612 1643614, overlap 1643608 1643614 TTATAAGAAATTAAA GTTCTAAGTTTTAGGTGAAG TAATG CTTCATCTAAAACTTAGAAT ATTTGTTTAAGCAAG TERM 2160 1643614 - 1643656 + F 100 -19.6 -3.81557 | opp_overlap 1643613 1643608 1643614, overlap 1643612 TATAAGAAATTAAAG TTCTAAGTTTTAGGTGAAGT AAT GCTTCATCTAAAACTTAGAA TATTTGTTTAAGCAA TERM 2161 1643656 - 1643614 - f 100 -16.7 -3.13568 | opp_overlap 1643614 1643612, overlap 1643613 1643608 TATAAGAAATTAAAG TTCTAAGTTTTAGGTGAAG TAATG CTTCATCTAAAACTTAGAA TATTTGTTTAAGCAA CLL_A1586 1643780 - 1644424 + | putative transaldolase TERM 2162 1645493 - 1645458 - g 93 -11.4 -3.60631 | opp_overlap 1645466, overlap 1645464 TAACAAAGAGTATAA TTGAAACAGTAAGTAA AGTA TTACTAACTGCTTCAA AAGAGGCTGGAATTG TERM 2163 1646349 - 1646333 - g 70 -2.9 -5.27335 | TTTGTTAAAGAAAAA CTTCCTG AAG CTGAAAG AATAATAAATGAGAT CLL_A1587 1644959 - 1647109 + | phage infection protein TERM 2164 1647152 - 1647200 + F 93 -7 -5.72254 | gap 1 ACAATAATTTTGATA TGCTC-TCCTTGTAGTAGACA AATAAAAA TGTCTATTGTGAGGAAGAGCA TTTTTTATTCTTTAG CLL_A1588 1647468 - 1647782 + | hypothetical protein CLL_A1589 1649398 - 1648025 - | Na+-driven multidrug efflux pump TERM 2165 1648696 - 1648727 + g 74 -6.1 -4.51121 | CTATATTTAGATGTT CAATTGCAAATTT TTTATC AAATTTCCAATTG TGTTTTTTTAATTTT CLL_A1590 1649776 - 1651494 + | metallo-beta-lactamase superfamily protein TERM 2166 1651596 - 1651562 - f 86 -9.7 -4.08767 | opp_overlap 1651562 GCTATGCTTTGAAAA TGTATATATTATAAA AACAA CTTATAATATATACA TTTACTTAAGGCGTG TERM 2167 1651562 - 1651596 + F 81 -9 -3.90588 | opp_overlap 1651562 GCTATGCTTTGAAAA TGTATATATTATAA AAACAAC TTATAATATATACA TTTACTTAAGGCGTG TERM 2168 1654298 - 1654282 - g 80 -3.8 -5.59502 | opp_overlap 1654285 1654287, overlap 1654287 GAAAAAATTAAAAAA TAGAAT AGCTA ATTCTA AAATTGGCTATGTAT CLL_A1591 1651982 - 1654489 + | hypothetical protein TERM 2169 1654618 - 1654602 - g 71 -8.1 -3.32882 | overlap 1654600 1654610 AATTACAACAAGATA TGATAGA ATC TCTATCA AAGATATCTAAAAGT CLL_A1592 1654517 - 1655287 + | hypothetical protein TERM 2170 1656546 - 1656535 - g 73 -3 -5.5604 | TGAATTAATAAAAAA TCTT AACA AAGA ATTAAATGGAATAAC CLL_A1593 1655294 - 1657063 + | hypothetical protein CLL_A1594 1657100 - 1658902 + | putative GTPase TERM 2171 1659193 - 1659211 + F 71 -7.4 -3.99062 | opp_overlap 1659183 AAATATTACTATTGA CTCATACC TTA GGTAGGAG TTTATAATAAATATT TERM 2172 1659350 - 1659324 - f 71 -6.9 -4.04752 | opp_overlap 1659324 AAAGCAGATCATAAA TTTAAAAATTA GACTT TAATTTTTAAA TTATTCTTATACTAA TERM 2173 1659324 - 1659350 + F 77 -7.6 -4.05004 | opp_overlap 1659324 AAAGCAGATCATAAA TTTAAAAATTAG ACT TTAATTTTTAAA TTATTCTTATACTAA CLL_A1595 1659414 - 1660598 + | spore coat polysaccharide biosynthesis protein SpsC TERM 2174 1660746 - 1660778 + F 75 -5.8 -4.99861 | gap 1, opp_overlap 1660746 1660740, overlap 1660740 GACAATTAATTAAAA GTAGCATAT-TTAGT GAAA ACTATTATATGCTAC TTTTTATGGTTAGTA CLL_A1596 1661193 - 1662353 + | transcriptional regulator TERM 2175 1662374 - 1662390 + F 73 -3.1 -5.50499 | overlap 1662376 ATAGTTTTAGTATAA TGTTTAT AAT ATAAATA TTTTTTTAGATATCA CLL_A1597 1662436 - 1662795 + | putative lipoprotein TERM 2176 1662841 - 1662878 + F 100 -9.5 -5.66989 | gap 1, opp_overlap 1662841 AAAAATTTTTAAAAA GGTGATAAAAAAGCAATT TAA ATTTG-TTTTTTATCACC TTTTTTTAATATTTA TERM 2177 1662878 - 1662841 - f 93 -9.5 -4.67168 | gap 1, opp_overlap 1662841 AAAAATTTTTAAAAA GGTGATAAAAAAGCAATT TAA ATTTG-TTTTTTATCACC TTTTTTTAATATTTA CLL_A1598 1663170 - 1665335 + | hypothetical protein CLL_A1599 1665402 - 1665830 + | hypothetical protein CLL_A1600 1665844 - 1666269 + | hypothetical protein CLL_A1601 1666626 - 1667072 + | chaperone protein DnaJ TERM 2178 1667069 - 1667051 - f 73 -7.6 -3.73302 | TAAGATATTTAATAA TTTCTTTA ATG TAAAGAAA TAAGGATTTATATAG CLL_A1602 1667121 - 1667678 + | hypothetical protein CLL_A1603 1667692 - 1668201 + | hypothetical protein TERM 2179 1668773 - 1668760 - g 71 -3.9 -5.15117 | opp_overlap 1668760 GAAAACTTGAAAAAA TTGAA GCAC TTCAA GTTTTAAATAACAAA CLL_A1604 1668207 - 1669046 + | putative stage II sporulation protein E TERM 2180 1669690 - 1669677 - g 75 -5.3 -4.91852 | GTGATGAAAAAGAAA TAGAG GATG CTCTA GAGGGGGCAACAGAA CLL_A1605 1669076 - 1670917 + | tetratricopeptide repeat domain protein TERM 2181 1671383 - 1671373 - g 78 -2.6 -5.7827 | overlap 1671380 AATATAAAGAAAAAA TAAA TAC TTTA TACAAGTGTTTTATA CLL_A1606 1670910 - 1672187 + | putative normocyte binding protein 2b TERM 2182 1672691 - 1672662 - g 87 -8.2 -4.75404 | AAATTTTAGCAAAAA TATTTAAATACA GCAGAG TGTATTTAAATA AAGAAAGTTCAAAAG CLL_A1607 1672184 - 1672882 + | hypothetical protein CLL_A1608 1672990 - 1675638 + | hypothetical protein CLL_A1609 1676166 - 1676942 + | hypothetical protein CLL_A1610 1676960 - 1678402 + | hypothetical protein CLL_A1611 1678431 - 1679039 + | hypothetical protein TERM 2183 1680242 - 1680257 + G 80 -7.6 -4.54205 | TAAGGAAGTTAAGCT TACTCC AGAT GGAGTA TTTATTTCATGTGAT CLL_A1612 1679064 - 1680497 + | hypothetical protein CLL_A1613 1680516 - 1681661 + | hypothetical protein CLL_A1614 1681661 - 1682179 + | hypothetical protein TERM 2184 1682644 - 1682630 - g 75 -5.7 -4.63542 | TAGAAGTCCTAAAAA TCCTG ATGTA CAGGA AGCAGCAAAGGAAAT CLL_A1615 1682181 - 1682930 + | hypothetical protein TERM 2185 1683900 - 1683888 - g 83 -4.9 -5.60864 | TATAGATGAAAAAAA TGAAT TAC ATTCA AATGAAAAGTATTTT TERM 2186 1688721 - 1688709 - g 86 -6.3 -5.2112 | opp_overlap 1688709, overlap 1688698 AATACTATTAAAAAA TAGTG AGA CACTA TCATTAGAACAAGGA TERM 2187 1689370 - 1689349 - g 73 -8.9 -2.58252 | opp_overlap 1689348 1689354 1689359, overlap 1689348 1689351 1689354 AAAGTAAGCAGTAAG CATAAGAAT TTCT ATTCTTATG ATAGTATGAATAGAT CLL_A1616 1682959 - 1690863 + | YD repeat containing protein CLL_A1617 1690883 - 1691227 + | hypothetical protein CLL_A1618 1691230 - 1691757 + | hypothetical protein TERM 2188 1691913 - 1691949 + F 83 -6.7 -5.18726 | opp_overlap 1691914, overlap 1691914 AAATAAAAATTAAGA AGGTGGATAGTCTTG ACAAAAA TAAGACTATCTACCC TTTTTGTTGTGCCAG TERM 2189 1691914 - 1691948 + F 90 -10.2 -3.70512 | opp_overlap 1691914, overlap 1691913 AATAAAAATTAAGAA GGTGGATAGTCTTG ACAAAAA TAAGACTATCTACC CTTTTTGTTGTGCCA TERM 2190 1691948 - 1691914 - f 73 -7.3 -4.06335 | opp_overlap 1691913 1691914 AATAAAAATTAAGAA GGTGGATAGTCTT GACAAAAAT AAGACTATCTACC CTTTTTGTTGTGCCA TERM 2191 1692087 - 1692050 - f 79 -7.2 -4.68655 | opp_overlap 1692050 GAATGCCAAAATAAA CCCTGTAAATTACT TAAATAATGT AGTAAATTACAGGG TTTTAAGAGTGCATC TERM 2192 1692050 - 1692087 + F 73 -7.2 -4.11692 | opp_overlap 1692050 GAATGCCAAAATAAA CCCTGTAAATTACT TAAATAATGT AGTAAATTACAGGG TTTTAAGAGTGCATC CLL_A1619 1692467 - 1693231 + | YD repeat containing protein TERM 2193 1693373 - 1693362 - g 73 -4.4 -5.04325 | CGGAAATTACAAAAA CTAC TGAG GTAG GAAGTAACGCTTATG CLL_A1620 1693289 - 1693816 + | hypothetical protein CLL_A1621 1693835 - 1694224 + | hypothetical protein TERM 2194 1694300 - 1694342 + F 84 -5.1 -5.68023 | AATTTAAGCTGATAG CAAAACTTCAATGGATG TTAATAATT TGTCTATTGGAGTTTTG TTTTTTTAGTTGTAA TERM 2195 1694712 - 1694698 - g 71 -4.2 -5.04597 | overlap 1694700 ATGCACATATAAAAA TGGTGC GTA GCACAA CTGAATTCTTAAAAG CLL_A1622 1694697 - 1695701 + | YD repeat containing protein CLL_A1623 1695707 - 1696183 + | hypothetical protein TERM 2196 1696267 - 1696306 + F 80 -5.9 -5.12617 | GACATGTTAGATGAG TAGCATTCATGCAGGTA TTTAGT TATCAGTATGAATGTTA TTTTTTACATAATTA CLL_A1624 1696836 - 1697477 + | SMI1 / KNR4 family CLL_A1625 1697635 - 1697751 + | hypothetical protein TERM 2197 1697840 - 1697879 + F 78 -9.6 -3.04263 | gap 1, opp_overlap 1697840 1697845, overlap 1697845 ACAGTGAAGAAAATG TAAAATAGCC-CCATTTTT ATA AAAGGTGGTGGCTATTTTG TGTTACCAATAAAAT TERM 2198 1697845 - 1697874 + F 79 -7.3 -4.66938 | gap 1, opp_overlap 1697845 1697840, overlap 1697840 GAAGAAAATGTAAAA TAGCC-CCATTTTT ATA AAAGGTGGTGGCTA TTTTGTGTTACCAAT CLL_A1626 1697879 - 1698070 + | hypothetical protein CLL_A1627 1698355 - 1698810 + | hypothetical protein CLL_A1628 1698837 - 1699325 + | hypothetical protein TERM 2199 1699524 - 1699508 - f 72 -8.1 -3.16921 | opp_overlap 1699502 AGTAAGTTCGAGTAA CCAAATT ATA AATTTGG ACTCTCACTTAAACA CLL_A1629 1699521 - 1699934 + | wall-associated protein TERM 2200 1700907 - 1700894 - g 71 -2.4 -5.47159 | GGCGAATATAAAAAA GCAA TAGAAG TTGC TAGGAATTTGTTGGA CLL_A1630 1700021 - 1700998 + | hypothetical protein TERM 2201 1701059 - 1701091 + F 100 -13.8 -5.24129 | opp_overlap 1701052 1701059 TAATATAATTTGAAA TACTCCATTTATAA AAAAA TTATAAATGGAGTA TTTTTTCTGCAAAGA TERM 2202 1701091 - 1701059 - f 100 -13.8 -3.71883 | opp_overlap 1701059, overlap 1701052 TAATATAATTTGAAA TACTCCATTTATAA AAAAA TTATAAATGGAGTA TTTTTTCTGCAAAGA CLL_A1631 1701456 - 1701821 + | hypothetical protein CLL_A1632 1701818 - 1702057 + | hypothetical protein TERM 2203 1702229 - 1702250 + G 73 -3.1 -5.40014 | opp_overlap 1702232, overlap 1702232 GCAAATTAAAATAGT AAATATAGT TGTA ACTATATTC TTTTTCTTATTGTTT TERM 2204 1702232 - 1702247 + G 70 -4.8 -4.72127 | opp_overlap 1702232, overlap 1702229 AATTAAAATAGTAAA TATAGT TGTA ACTATA TTCTTTTTCTTATTG CLL_A1633 1702212 - 1702619 + | hypothetical protein TERM 2205 1703058 - 1703087 + F 78 -6.5 -4.8066 | opp_overlap 1703057 1703060 TATAAGTCAAGATAG CAGGTAAGAAAAA TTAA TTAATCTTACCTG TTTTTCGATTATATT CLL_A1634 1703110 - 1704075 + | hypothetical protein CLL_A1635 1704149 - 1704634 + | group-specific protein CLL_A1636 1704959 - 1705522 + | hypothetical protein TERM 2206 1706648 - 1706690 + G 74 -6.6 -4.26344 | opp_overlap 1706648 1706650 1706653, overlap 1706650 1706653 ATTAATGGTAAAATA TATTATTCATATGTAATACT AAG ACTATTACATATGAATGGTC TTTTAGTAAGAATAT TERM 2207 1706650 - 1706688 + G 82 -9.2 -3.7331 | opp_overlap 1706648 1706650 1706653, overlap 1706648 1706653 TAATGGTAAAATATA TTATTCATATGTAATACT AAG ACTATTACATATGAATGG TCTTTTAGTAAGAAT TERM 2208 1706653 - 1706685 + G 88 -10.9 -2.96321 | opp_overlap 1706650 1706648 1706653, overlap 1706650 1706648 TGGTAAAATATATTA TTCATATGTAATACT AAG ACTATTACATATGAA TGGTCTTTTAGTAAG TERM 2209 1706685 - 1706653 - g 86 -10.9 -2.85585 | opp_overlap 1706653 1706650 1706648, overlap 1706650 1706648 TGGTAAAATATATTA TTCATATGTAATACT AAG ACTATTACATATGAA TGGTCTTTTAGTAAG CLL_A1637 1706543 - 1706734 + | hypothetical protein CLL_A1638 1706940 - 1708166 + | hypothetical protein TERM 2210 1708173 - 1708201 + F 83 -7.6 -4.63479 | opp_overlap 1708175 TTTATATAATTTAAG TAGAGCGAATAT ATATA GTATTTGCTCTA TTTTAGTTTCTAATA CLL_A1639 1708335 - 1709297 + | hypothetical protein CLL_A1640 1709322 - 1709471 + | endonuclease V TERM 2211 1709553 - 1709578 + F 90 -6.2 -5.93252 | opp_overlap 1709553 ATATTGATTTAGAAA CACCTATGAT TTAGTT ATCTTAGGTG TTTTTTATTTTTGAG CLL_A1641 1709834 - 1709998 + | hypothetical protein TERM 2212 1710211 - 1710197 - g 72 -5.8 -4.47271 | TAAAGTCAAGGAAAA CTTTTT TTG AAAAAG TAACTGAAAAGGATG CLL_A1642 1710070 - 1710675 + | hypothetical protein CLL_A1643 1710680 - 1711585 + | hypothetical protein TERM 2213 1711618 - 1711675 + F 100 -16.9 -4.30912 | opp_overlap 1711618 TCTAATTAAAGCAAA GATACTTATATAACATGCAAAAACT AATTTGAA AGTTTTTACATGTTATATAGGTATC TCTTTTTATTGTTTA TERM 2214 1711675 - 1711618 - f 100 -16.9 -4.14598 | opp_overlap 1711618 TCTAATTAAAGCAAA GATACTTATATAACATGCAAAAACT AATTTGAA AGTTTTTACATGTTATATAGGTATC TCTTTTTATTGTTTA CLL_A1644 1712274 - 1712825 + | hypothetical protein CLL_A1645 1712955 - 1713191 + | hypothetical protein CLL_A1646 1713244 - 1713381 + | hypothetical protein CLL_A1647 1713413 - 1713658 + | hypothetical protein CLL_A1648 1713925 - 1714404 + | hypothetical protein TERM 2215 1714526 - 1714540 + F 71 -7.2 -3.86935 | AAAGTCTATAGAGTG GCAAAT AAG ATTTGC TTATTGTACTGATTG TERM 2216 1714828 - 1714865 + F 83 -8 -4.67697 | overlap 1714834 ATCATTAATATCTTT TAGAAACACTTAGGAT TTAATT ATCTTAGGTGTTTTTA TTTGTTGTTTTAGAA TERM 2217 1714834 - 1714859 + F 79 -4.8 -5.52807 | overlap 1714828 AATATCTTTTAGAAA CACTTAGGAT TTAATT ATCTTAGGTG TTTTTATTTGTTGTT CLL_A1649 1714981 - 1715121 + | hypothetical protein CLL_A1650 1715133 - 1715375 + | hypothetical protein CLL_A1651 1715401 - 1715829 + | putative lipoprotein TERM 2218 1715852 - 1715887 + F 86 -9.3 -3.91798 | opp_overlap 1715856, overlap 1715856 AATTAAGAAGAATTA TAAAGCTAATACATT AATTGG GATGTATTAGCTTTG TTTAATTAAAGATTA TERM 2219 1715883 - 1715856 - f 73 -7.2 -4.16767 | opp_overlap 1715852 1715856 AAGAAGAATTATAAA GCTAATACAT TAATTGGG ATGTATTAGC TTTGTTTAATTAAAG TERM 2220 1715856 - 1715883 + F 83 -7.9 -4.56702 | opp_overlap 1715856, overlap 1715852 AAGAAGAATTATAAA GCTAATACATT AATTGG GATGTATTAGC TTTGTTTAATTAAAG TERM 2221 1716016 - 1715988 - g 88 -9.1 -4.59489 | opp_overlap 1715988 AATTTAAAGAAGAAA TTCACTAGAAA TATAAGT TTTCTAGTGAA TTTTTTAATAATTAT TERM 2222 1715988 - 1716016 + G 100 -9.1 -5.22794 | opp_overlap 1715988 AATTTAAAGAAGAAA TTCACTAGAAA TATAAGT TTTCTAGTGAA TTTTTTAATAATTAT CLL_A1653 1715946 - 1716074 + | hypothetical protein CLL_A1652 1716701 - 1716045 - | transcriptional regulator CLL_A1654 1716872 - 1718188 + | natural resistance-associated macrophage protein CLL_A1655 1718151 - 1718276 + | hypothetical protein TERM 2223 1718340 - 1718367 + F 82 -5.7 -5.56372 | ATTTATATCGAAATA TCACTTGGGAT TTAGTT ATCTTAAGTGA TTTTTATTTTAGTTT CLL_A1656 1718674 - 1720371 + | chaperone protein, Hsp70 family TERM 2224 1722609 - 1722599 - g 71 -4 -5.14626 | ATTATGAAAAGAAAA TAGA GTA TCTA GAGAAACAAATGGAA CLL_A1657 1720381 - 1723665 + | putative TPR Domain containing protein TERM 2225 1723681 - 1723705 + F 78 -4.3 -5.48623 | opp_overlap 1723681 1723676 TTATAAAAAGTAAAA TGGATTCTC TATTAAT GTGAATCCA TTTTTATTTATCTTT TERM 2226 1723803 - 1723777 - f 100 -12.6 -3.92005 | opp_overlap 1723784, overlap 1723787 ATACATAAAGTCAAA TTGATAATATCT AAA AGATATTATCAA AAAAATCTCTTAGTT TERM 2227 1724388 - 1724377 - g 73 -3 -5.47159 | GTGAAGAAACAAAAA TTTC TTAT GAAA TCACTGAAAAGATAG CLL_A1658 1723842 - 1724738 + | nudix hydrolase CLL_A1659 1724910 - 1725713 + | gp63 CLL_A1660 1725817 - 1727301 + | nicotinamide phosphoribosyltransferase TERM 2228 1727866 - 1727854 - g 74 -4.9 -5.15167 | CATTAGGAAGAAAAA TCAAA AAT TTTGA TGAAGATACTTGGAA CLL_A1661 1727346 - 1728152 + | hypothetical protein TERM 2229 1728207 - 1728162 - T 79 -8.8 -3.51365 | gap 1, opp_overlap 1728167, overlap 1728167 TTATAGTTTATATAA TAAAATAGTAGATAACTTTAT GTGAA ATA-AGTTATCTACTATTTTT ATTTATTTATTTTGC TERM 2230 1728167 - 1728202 + T 100 -8.7 -5.56573 | gap 1, opp_overlap 1728162 1728167 GTTTATATAATAAAA TAGTAGATAACTTTAT GTGAA ATA-AGTTATCTACTA TTTTTATTTATTTAT TERM 2231 1728202 - 1728167 - T 93 -8.7 -4.84311 | gap 1, opp_overlap 1728167, overlap 1728162 GTTTATATAATAAAA TAGTAGATAACTTTAT GTGAA ATA-AGTTATCTACTA TTTTTATTTATTTAT TERM 2232 1728229 - 1728246 + T 78 -5.7 -5.13343 | TTATTTTGCTTAGTT TTTAGAT TTTC ATCTAAA TTTTGTTTTAAGTTG CLL_A1662 1729046 - 1728210 - | hypothetical protein TERM 2233 1728584 - 1728600 + g 74 -8.1 -3.66178 | opp_overlap 1728583 1728580 TATTTTTAGAATGAC TGAACTT TAT AAGTTCA TTTAAACTTGCAGAG TERM 2234 1728821 - 1728833 + g 86 -6.3 -5.26247 | GATCCATAGTTGTTT CAATC AAA GATTG TTTTCTTTCTTTTAA TERM 2235 1729175 - 1729144 - H 73 -3.3 -5.59879 | opp_overlap 1729147, overlap 1729147 GATAAAGAGAAAAAA TAATATTAATAAA GAAATT TTTATTAATATTT ATACATAATAATAAC TERM 2236 1729172 - 1729147 - H 70 -5 -4.8277 | opp_overlap 1729147, overlap 1729144 AAAGAGAAAAAATAA TATTAATAAA GAAATT TTTATTAATA TTTATACATAATAAT TERM 2237 1730178 - 1730196 + G 72 -6.1 -4.39568 | AATTAAATATACCTA GAGAAAT GAAAA ATTTCTC TTTTAATATATGGGT TERM 2238 1730721 - 1730735 + G 78 -10 -2.71011 | overlap 1730723 TTGTATCAGGTAGCT CAGCAG CCG CTGCTG TAGTTGCAGGGGGAT CLL_A1663 1729217 - 1731043 + | CspA TERM 2239 1732300 - 1732288 - g 70 -7.7 -3.3517 | opp_overlap 1732286 1732283, overlap 1732286 ATGGAGCATACAATA TGTGG ATA CCACA GTATGGATTATCAAT CLL_A1664 1731030 - 1732751 + | CspA CLL_A1665 1732910 - 1734310 + | aldehyde dehydrogenase, dimeric NADP-preferring TERM 2240 1734362 - 1734398 + F 79 -8.4 -4.16279 | gap 1, opp_overlap 1734364 1734367, overlap 1734363 1734364 1734367 1734369 ATTCTTTTTAGAGAA TA-TAATGCACATAGAT AATC ATCTATGTGTATTACTA TTTTAGAATGATATA TERM 2241 1734363 - 1734396 + F 79 -9.1 -3.67634 | opp_overlap 1734364 1734367, overlap 1734362 1734364 1734367 1734369 TTCTTTTTAGAGAAT ATAATGCACATAGAT AATC ATCTATGTGTATTAC TATTTTAGAATGATA TERM 2242 1734395 - 1734364 - f 90 -10.4 -3.31726 | opp_overlap 1734363 1734362 1734364 1734367 1734369, overlap 1734367 TCTTTTTAGAGAATA TAATGCACATAGAT AATC ATCTATGTGTATTA CTATTTTAGAATGAT TERM 2243 1734364 - 1734395 + F 91 -12.6 -2.80098 | opp_overlap 1734364 1734367, overlap 1734363 1734362 1734367 1734369 TCTTTTTAGAGAATA TAATGCACATAGAT AATC ATCTATGTGTATTA CTATTTTAGAATGAT TERM 2244 1734392 - 1734367 - f 73 -7.7 -3.79874 | opp_overlap 1734364 1734363 1734362 1734367 1734369, overlap 1734364 TTTTAGAGAATATAA TGCACATAGAT AATC ATCTATGTGTA TTACTATTTTAGAAT TERM 2245 1734367 - 1734392 + F 89 -9.9 -3.54181 | opp_overlap 1734367 1734364, overlap 1734364 1734363 1734362 1734369 TTTTAGAGAATATAA TGCACATAGAT AATC ATCTATGTGTA TTACTATTTTAGAAT TERM 2246 1734369 - 1734390 + F 90 -10.3 -3.33884 | opp_overlap 1734367 1734364, overlap 1734367 1734364 1734363 1734362 TTAGAGAATATAATG CACATAGAT AATC ATCTATGTG TATTACTATTTTAGA gshAB 1734620 - 1736923 + | glutamate--cysteine ligase/gamma-glutamylcysteine synthetase TERM 2247 1736953 - 1737002 + F 100 -12.4 -5.59357 | opp_overlap 1736951 1736963, overlap 1736955 TAAAATAAGATATTC AGTAGCAGAAGAAGCCGTAAGA TAATTT TATTATGGCTTCTTCTGCTATA TTTTTTTCATATAGT TERM 2248 1736955 - 1737000 + F 100 -17.2 -4.42962 | opp_overlap 1736951 1736963, overlap 1736953 AAATAAGATATTCAG TAGCAGAAGAAGCCGTAAGA TAATTT TATTATGGCTTCTTCTGCTA TATTTTTTTCATATA TERM 2249 1737052 - 1737024 - f 95 -12.1 -3.60234 | opp_overlap 1737021 1737019 1737017 1737024 TCATATAGTTTGAAA TTTCTTTTTTATA CAT TATAAAAAAGAAA TGATATAATTTTAAT TERM 2250 1737024 - 1737052 + F 89 -12.1 -2.7624 | opp_overlap 1737024, overlap 1737021 1737019 1737017 TCATATAGTTTGAAA TTTCTTTTTTATA CAT TATAAAAAAGAAA TGATATAATTTTAAT CLL_A1667 1737191 - 1737700 + | nudix-family protein TERM 2251 1737724 - 1737758 + T 93 -8 -5.1523 | opp_overlap 1737724 ATTAAGCAACAAAAA GGTGTGTATAGTAAAT AAA AATTATTAAACACACC TTTTTATCTTATAAA TERM 2252 1737758 - 1737724 - T 78 -5.8 -5.20534 | opp_overlap 1737724 ATTAAGCAACAAAAA GGTGTGTATAGTAAAT AAA AATTATTAAACACACC TTTTTATCTTATAAA CLL_A1668 1739139 - 1737784 - | putative integral membrane protein TERM 2253 1739092 - 1739114 + g 91 -7.8 -5.34655 | opp_overlap 1739092 1739091 CATTGACATCAATAG TGGGAATACA GGT TTTATTCCCA TTTTATTTTTAGTTA TERM 2254 1739278 - 1739227 - R 78 -6 -5.00196 | gap 1, opp_overlap 1739230, overlap 1739230 TCCTAAATAATAAAA GAACCCCACTTACTACTGTTT-TGG TTC CAAGAAACAGTAAAAAGTGGGGTAT ATAATTCAATATACT TERM 2255 1739230 - 1739275 + r 82 -9.9 -3.01537 | gap 1, opp_overlap 1739227 1739230 TAAATAATAAAAGAA CCCCACTTACTACTGTTT-TGG TTC CAAGAAACAGTAAAAAGTGGGG TATATAATTCAATAT TERM 2256 1739275 - 1739230 - R 100 -12.1 -4.57912 | gap 1, opp_overlap 1739230, overlap 1739227 TAAATAATAAAAGAA CCCCACTTACTACTGTTT-TGG TTC CAAGAAACAGTAAAAAGTGGGG TATATAATTCAATAT CLL_A1669 1739652 - 1739341 - | hypothetical protein CLL_A1670 1739967 - 1740611 + | hypothetical protein CLL_A1671 1741037 - 1741576 + | hypothetical protein CLL_A1672 1741563 - 1741961 + | transcriptional regulator YtrA CLL_A1673 1741945 - 1742841 + | ABC transporter ATP-binding protein CLL_A1674 1742822 - 1743871 + | hypothetical protein TERM 2257 1743886 - 1743914 + TF 81 -7.5 -4.52589 | opp_overlap 1743886 AATTTTGTTAGATAA GGGATTGTTGT AAGAAAA GCAACGATCCC TTTTATATAGGAAAA CLL_A1675 1744223 - 1744068 - | hypothetical protein CLL_A1676 1744217 - 1744507 + | hypothetical protein TERM 2258 1744575 - 1744595 + FH 76 -8.3 -3.73414 | opp_overlap 1744577 1744579, overlap 1744579 ACTTTATTGTGTGAA TAGAGGCAA ATA TAGCCTCTA TTTGCCTGTAATCTA TERM 2259 1744832 - 1744818 - fH 71 -5.8 -4.67755 | AGATTTATTGAAAAA TTAAGT ATT ACTTAA ATAAATGTTTATTTT rluB 1744866 - 1745576 + | ribosomal large subunit pseudouridine synthase B CLL_A1678 1745750 - 1746655 + | RpiR-family transcriptional regulator TERM 2260 1746712 - 1746665 - f 72 -8 -3.6216 | opp_overlap 1746665 1746670, overlap 1746670 GACTAAGAATTATAA CAAAAGCCTTAGAGGAATTA TTAAAATT TATTTCCTTTAAGGCTTTTA TTTTGTAAATTTTGA TERM 2261 1746665 - 1746712 + F 81 -8 -4.54477 | opp_overlap 1746665 1746670, overlap 1746670 GACTAAGAATTATAA CAAAAGCCTTAGAGGAATTA TTAAAATT TATTTCCTTTAAGGCTTTTA TTTTGTAAATTTTGA TERM 2262 1746707 - 1746670 - f 73 -5.7 -4.85396 | opp_overlap 1746665 1746670, overlap 1746665 AGAATTATAACAAAA GCCTTAGAGGAATTA TTAAAATT TATTTCCTTTAAGGC TTTTATTTTGTAAAT TERM 2263 1746670 - 1746707 + F 93 -7.9 -5.19275 | opp_overlap 1746670 1746665, overlap 1746665 AGAATTATAACAAAA GCCTTAGAGGAATTA TTAAAATT TATTTCCTTTAAGGC TTTTATTTTGTAAAT CLL_A1679 1746785 - 1748083 + | tRNA nucleotidyltransferase/poly(A) polymerase family protein CLL_A1680 1748102 - 1748380 + | hypothetical protein TERM 2264 1748490 - 1748525 + F 100 -10.8 -5.63517 | opp_overlap 1748490 TAAAAATCTTATAAA CTGACTTAAAATTA TTTAGATT TAATTTTAAGTCAG TTTTTTCTTTCGAAA TERM 2265 1748525 - 1748490 - f 95 -10.8 -3.99013 | opp_overlap 1748490 TAAAAATCTTATAAA CTGACTTAAAATTA TTTAGATT TAATTTTAAGTCAG TTTTTTCTTTCGAAA CLL_A1681 1748689 - 1749381 + | regulatory protein VanR TERM 2266 1750491 - 1750459 - g 76 -3.8 -5.43414 | opp_overlap 1750452 1750486, overlap 1750452 1750482 1750486 ATCAGACATAAAAAA TTTATATTTATT AAATAAAGA AATAAATATAAA AAATTATATTTATGA TERM 2267 1750503 - 1750482 - g 77 -6.1 -4.80736 | opp_overlap 1750486, overlap 1750459 1750486 TATTAAATAAAGAAA TAAATATAA AAAA TTATATTTA TGAAAAATCATTAAT TERM 2268 1750704 - 1750718 + G 75 -5.8 -4.65838 | opp_overlap 1750703 ATGAGGTTATGAGAT TAATAC CTA GTATTA TTTTTACCATATGTA CLL_A1682 1749359 - 1751593 + | sensory transduction protein kinase CLL_A1683 1751739 - 1752701 + | alpha/beta hydrolase CLL_A1684 1752751 - 1752870 + | hypothetical protein CLL_A1685 1752945 - 1753175 + | hypothetical protein TERM 2269 1753267 - 1753296 + F 80 -6 -5.1848 | gap 1, opp_overlap 1753267 AGATTAAGCTAATAA GCATCTAAA-ATA ATTGA TATTTTTAGATGC TTTTTTAGGTTGCTT CLL_A1686 1753440 - 1753961 + | hypothetical protein CLL_A1687 1754153 - 1754344 + | hypothetical protein TERM 2270 1754548 - 1754593 + F 86 -9.5 -4.07568 | gap 1, opp_overlap 1754548 1754562, overlap 1754551 TACGACGCAAAAATA GAGCTCTATTAAGATTTATATT ATA AAT-TAGATTTTAATAGAGTTC TTTTGAGAGAGGAAG TERM 2271 1754551 - 1754590 + F 77 -7.6 -4.17048 | gap 1, opp_overlap 1754548 1754562, overlap 1754548 GACGCAAAAATAGAG CTCTATTAAGATTTATATT ATA AAT-TAGATTTTAATAGAG TTCTTTTGAGAGAGG topB 1754615 - 1756804 + | DNA topoisomerase III TERM 2272 1756902 - 1756872 - f 100 -11.5 -4.81083 | opp_overlap 1756872 TTTAAGTATGAAAAA TAGTCTATTATAT ATTGA ATATAATAGACTA TTTTTTGTTTAGTAA TERM 2273 1756872 - 1756902 + F 100 -11.5 -5.68438 | opp_overlap 1756872 TTTAAGTATGAAAAA TAGTCTATTATAT ATTGA ATATAATAGACTA TTTTTTGTTTAGTAA CLL_A1689 1757163 - 1757660 + | hypothetical protein TERM 2274 1757866 - 1757820 - g 70 -8.4 -2.6704 | gap 1, opp_overlap 1757828, overlap 1757817 1757816 1757828 CAAATGTCAAATGTA TCATCTAATCCTTTAAC-TGA ACATTA TCATGTTAAAGGATTTAATGA TAGTGCAGGAGAAAA CLL_A1690 1757709 - 1757900 + | hypothetical protein CLL_A1691 1757995 - 1758243 + | hypothetical protein TERM 2275 1758444 - 1758407 - f 79 -8.7 -3.74224 | opp_overlap 1758409, overlap 1758409 GGCAAATTATTCAAA GAGTTCCAAATATAATA AATT TATTATAGTTGGAACTT TTTCTATTGTAAAAA TERM 2276 1758409 - 1758442 + F 100 -11.3 -5.1523 | opp_overlap 1758407 1758409 CAAATTATTCAAAGA GTTCCAAATATAATA AATT TATTATAGTTGGAAC TTTTTCTATTGTAAA TERM 2277 1758442 - 1758409 - f 93 -11.3 -3.44924 | opp_overlap 1758409, overlap 1758407 CAAATTATTCAAAGA GTTCCAAATATAATA AATT TATTATAGTTGGAAC TTTTTCTATTGTAAA CLL_A1692 1758591 - 1758740 + | hypothetical protein TERM 2278 1759047 - 1759063 + G 74 -8.1 -3.53531 | opp_overlap 1759051 CATAATGGAGGATTT GAAAGAA AAT TTCTTTC TTGTCATATTCCTGA TERM 2279 1761573 - 1761554 - g 77 -2.2 -5.77734 | overlap 1761556 AAAGAAAAATAAAAA CATTGAAC TTGA ATTCAATA ATGAAGCGAGAAAAC CLL_A1693 1758750 - 1761674 + | putative exonuclease TERM 2280 1762443 - 1762456 + G 70 -6.7 -3.89033 | opp_overlap 1762439, overlap 1762442 1762437 CTCAAACAGTATCAG CAGCA TGGG TGCTG TATTTCTTATTTGGA CLL_A1694 1761803 - 1763173 + | mate efflux family protein TERM 2281 1763231 - 1763193 - f 73 -7.7 -3.75505 | opp_overlap 1763193 TTTTAAAAAGCATAA GGAATTGAATTGATTTA TAGTT TTAATTAATTCAATTCC TTTTTTCTTTATATG TERM 2282 1763193 - 1763231 + F 100 -9.9 -5.76237 | opp_overlap 1763193 TTTTAAAAAGCATAA GGAATTGAATTGATTTA TAGTT TTAATTAATTCAATTCC TTTTTTCTTTATATG CLL_A1695 1763477 - 1764664 + | transporter, major facilitator family TERM 2283 1764887 - 1764912 + F 100 -11.3 -5.83226 | opp_overlap 1764887 TATCTAGAAATGCAA CACCTCAAATT TTAT GATTTGAGGTG TTTTTTTATTAGATT TERM 2284 1764912 - 1764887 - f 90 -10.6 -3.33711 | opp_overlap 1764887 TATCTAGAAATGCAA CACCTCAAAT TTTATG ATTTGAGGTG TTTTTTTATTAGATT CLL_A1696 1764999 - 1766363 + | xanthine permease xpt 1766366 - 1766938 + | xanthine phosphoribosyltransferase TERM 2285 1767080 - 1767119 + F 73 -3.2 -5.4588 | gap 1 TATAATTAACTAAAA CTAGAAT-CGTAGTTAA ATTATTA TTAATTATGAATTCTAG TTTTTTATCGTTTTA TERM 2286 1767517 - 1767533 + G 74 -2.3 -5.56264 | CTATTGCAGCTGTAG GACTT GCAAACA AAGTC TTTTTTGTATTTACA TERM 2287 1768069 - 1768082 + G 76 -3.9 -5.46657 | opp_overlap 1768069 1768072, overlap 1768058 TTGCTTTTGATAAAA CATTT ATAA AAATG TTTTTTATTACAGTG CLL_A1698 1767348 - 1768721 + | mate efflux family protein TERM 2288 1768794 - 1768824 + F 100 -9.8 -5.28942 | opp_overlap 1768794 AGACTTATTAAAAAA TAGCTGAGAGTATT TTT ATTACACTCAGCTA TTTTTGTTTAAAATG TERM 2289 1768824 - 1768794 - f 100 -9.8 -5.17353 | opp_overlap 1768794 AGACTTATTAAAAAA TAGCTGAGAGTATT TTT ATTACACTCAGCTA TTTTTGTTTAAAATG TERM 2290 1772014 - 1772002 - g 77 -4.9 -5.30686 | opp_overlap 1772002 AAGATGTACAAAAAA GTAAA TGA TTTAC TTGGTGATATAATAA pyc 1769425 - 1772865 + | pyruvate carboxylase TERM 2291 1772925 - 1772889 - f 78 -8.3 -3.92592 | opp_overlap 1772889, overlap 1772892 ATTTCTAATATTAAA TAAGCATTTTAGGTT TAATTAT AACTTAAAATGCTTA TTTTTTTTACAAGTA TERM 2292 1772889 - 1772925 + F 100 -10.5 -5.76949 | opp_overlap 1772889 1772892 ATTTCTAATATTAAA TAAGCATTTTAGGTT TAATTAT AACTTAAAATGCTTA TTTTTTTTACAAGTA amyX 1773002 - 1775995 + | alpha-dextran endo-1,6-alpha-glucosidase TERM 2293 1776010 - 1775986 - f 73 -3.1 -5.54894 | opp_overlap 1775986, overlap 1776004 AAGTTATGAAAAAAA TTATAAATA ATAATTA TATTTATAA TTTTATAAAGAGAGA TERM 2294 1776020 - 1776048 + F 100 -15.5 -3.83502 | opp_overlap 1776020, overlap 1776047 TTATAATTTTATAAA GAGAGAGAAGCTT TAA AAGTTTCTCTCTC TTTACTATGCCAGTA TERM 2295 1776048 - 1776020 - f 100 -13.3 -3.9398 | opp_overlap 1776020 1776047 TTATAATTTTATAAA GAGAGAGAAGCTT TAA AAGTTTCTCTCTC TTTACTATGCCAGTA TERM 2296 1776159 - 1776170 + F 70 -3 -5.47218 | TGTATAAGGTTTAAC TTGA TTTT TCAA TTTTTTTAGATAAAA CLL_A1701 1776337 - 1777632 + | amidohydrolase TERM 2297 1777725 - 1777772 + F 100 -11 -3.90291 | opp_overlap 1777729 1777736, overlap 1777734 1777736 ATGAAACCTGAAATC CAAATAAAAAAGATTGATACTA GATT TAGTATTAATCTCTTTTATCTG TTTAATTAAAAAAGT TERM 2298 1777768 - 1777729 - f 95 -10.4 -3.85567 | opp_overlap 1777725 1777734 1777736, overlap 1777736 AACCTGAAATCCAAA TAAAAAAGATTGATACTA GATT TAGTATTAATCTCTTTTA TCTGTTTAATTAAAA TERM 2299 1777734 - 1777763 + F 76 -5.9 -4.74917 | opp_overlap 1777729 1777736, overlap 1777725 1777736 GAAATCCAAATAAAA AAGATTGATACTA GATT TAGTATTAATCTC TTTTATCTGTTTAAT TERM 2300 1777736 - 1777761 + F 78 -8.5 -3.97364 | opp_overlap 1777729 1777736, overlap 1777734 1777725 AATCCAAATAAAAAA GATTGATACTA GATT TAGTATTAATC TCTTTTATCTGTTTA TERM 2301 1777761 - 1777736 - f 87 -6.3 -5.67283 | opp_overlap 1777736 1777734 1777725, overlap 1777729 AATCCAAATAAAAAA GATTGATACTA GATT TAGTATTAATC TCTTTTATCTGTTTA TERM 2302 1778498 - 1778528 + F 100 -16.4 -5.89921 | opp_overlap 1778489 1778498 GTAACACGAGATATA CTCTCGTCCTTTAT AAA ATAAAGGATGAGAG TTTTTTTGTTGTCAT TERM 2303 1778528 - 1778498 - f 100 -14.2 -3.05727 | opp_overlap 1778498, overlap 1778489 GTAACACGAGATATA CTCTCGTCCTTTAT AAA ATAAAGGATGAGAG TTTTTTTGTTGTCAT tyrS 1778683 - 1779897 + | tyrosyl-tRNA synthetase CLL_A1703 1779968 - 1780780 + | purine nucleoside phosphorylase I, inosine and guanosine-specific TERM 2304 1781125 - 1781114 - g 73 -4.4 -5.08169 | ATATAGCTGAAAAAA TAGG AAAT CCTA AAGCATCAAGGGCTG CLL_A1704 1780816 - 1781295 + | methylated-DNA-[protein]-cysteine S-methyltransferase TERM 2305 1781539 - 1781512 - T 72 -8.6 -3.28912 | opp_overlap 1781470 1781512 1781511 1781519 TTATATTGAGAGCAA GTTAAAATGGGA CTAT TCTCATTTTAAC ATTCCTAAGTTTAAT TERM 2306 1781512 - 1781539 + T 81 -10.8 -2.54999 | opp_overlap 1781512, overlap 1781470 1781511 1781519 TTATATTGAGAGCAA GTTAAAATGGGA CTAT TCTCATTTTAAC ATTCCTAAGTTTAAT TERM 2307 1781596 - 1781610 + T 71 -5.8 -4.64024 | opp_overlap 1781590 TAGCAACTATTTTAC TAAAAC ACA GTTTTA TTTATTGTTTGCTTT CLL_A1705 1783647 - 1781608 - | putative propeptide, PepSY amd peptidase M4 CLL_A1706 1785355 - 1784000 - | [Fe] hydrogenase TERM 2308 1784306 - 1784320 + g 71 -4.4 -4.87665 | ATCAACTTTAACACT TTTAAA ATC TTTAAA TTTTTCTGGATAGAG TERM 2309 1785490 - 1785527 + H 86 -8.7 -4.54205 | opp_overlap 1785499 1785503, overlap 1785492 ATTTTAAAAGATTGA TTTTTACAATGAATATG TTAA CATATTCATTGTAGATG TTTATTTAGTATACT TERM 2310 1785492 - 1785525 + H 100 -13.5 -3.8721 | opp_overlap 1785499 1785503, overlap 1785490 TTTAAAAGATTGATT TTTACAATGAATATG TTAA CATATTCATTGTAGA TGTTTATTTAGTATA TERM 2311 1785518 - 1785499 - H 70 -8 -3.31461 | opp_overlap 1785492 1785490, overlap 1785503 GATTGATTTTTACAA TGAATATG TTAA CATATTCA TTGTAGATGTTTATT TERM 2312 1785939 - 1785929 - g 73 -5.4 -4.66953 | CTAATATGTTAAAAA GTCA AAA TGAC ATAAGATTAGTGGAA TERM 2313 1786142 - 1786129 - g 74 -3.8 -5.31275 | CTTTATTATAAAAAA GGAG AAGATA CTCC AAAACATATAAGAGC CLL_A1707 1785562 - 1786239 + | GTP-pyrophosphokinase galE 1786396 - 1787385 + | UDP-glucose 4-epimerase TERM 2314 1787516 - 1787483 - f 72 -8.5 -3.16742 | opp_overlap 1787486 1787490, overlap 1787486 1787490 GTTAACTTTTAGTAA TAATAAACTTTTATA TATT TATAAAGGTTTATTA GATTATTGAATTTTT TERM 2315 1787486 - 1787513 + F 70 -8 -3.29861 | opp_overlap 1787483 1787486 1787490, overlap 1787490 AACTTTTAGTAATAA TAAACTTTTATA TATT TATAAAGGTTTA TTAGATTATTGAATT TERM 2316 1787533 - 1787555 + F 100 -9.2 -6.01369 | ATTATTGAATTTTTA TCGTAGGATG TAA TGTCCTACGA TTTTTTTATTCTTTA CLL_A1709 1787885 - 1788394 + | citrulline cluster-linked gene TERM 2317 1788406 - 1788453 + F 72 -9 -2.7411 | gap 1, opp_overlap 1788406 1788409 1788414 1788418, overlap 1788414 TTAAATAAAATAAGT TAATAAAAGACATAAAAAAGA GAAAAAA TCTTTTTTGTGTCTTTT-TTA TAAATTTAATTATTT TERM 2318 1788414 - 1788446 + F 100 -8.7 -5.33866 | opp_overlap 1788409 1788406 1788414 1788418, overlap 1788406 AATAAGTTAATAAAA GACATAAAAAAGA GAAAAAA TCTTTTTTGTGTC TTTTTTATAAATTTA TERM 2319 1788446 - 1788414 - f 78 -6.5 -4.74539 | opp_overlap 1788414 1788406, overlap 1788409 1788406 1788418 AATAAGTTAATAAAA GACATAAAAAAGA GAAAAAA TCTTTTTTGTGTC TTTTTTATAAATTTA CLL_A1710 1788524 - 1788700 + | hypothetical protein TERM 2320 1789079 - 1789066 - g 78 -2.5 -5.85244 | opp_overlap 1789066 AATTAAAAGAAAAAA TTTAT TCAG ATAAA TATTCTATTAATGAT CLL_A1711 1788783 - 1789289 + | hypothetical protein TERM 2321 1789337 - 1789347 + F 79 -4 -5.80951 | AAGTTACTATTATTT TAAG TGA CTTA TTTTTTATTTTCAGT TERM 2322 1789939 - 1789954 + G 71 -2.6 -5.40072 | overlap 1789952 TATTTGTAAAGTCAG CTATTT TTTT AGATAG TTTTTTTACGAAAGA TERM 2323 1789978 - 1789998 + G 70 -6.3 -4.11027 | CGAAAGACTATGTTT TAGATATAA GAT TTATGTCTA TTATGTTTTTGATAA CLL_A1712 1789734 - 1791107 + | putative transmembrane protein CLL_A1713 1791260 - 1791976 + | putative signaling protein TERM 2324 1793069 - 1793022 - g 74 -8 -3.66139 | opp_overlap 1793031, overlap 1793060 GATATATATTTTAAA GATACTCATGATATCAATAGCA GTAT TACTATTGATAACTTAAATATC AAGAGTAATAAAAAT CLL_A1714 1791960 - 1793309 + | hypothetical protein CLL_A1715 1793321 - 1794571 + | N-acetylglucosaminyltransferase TERM 2325 1794624 - 1794637 + G 71 -2.5 -5.50313 | opp_overlap 1794624 TAATTTTATATAAAT TAAAA CTTT TTTTA TTTTTTACTTTTGTA CLL_A1716 1794593 - 1796812 + | putative cell wall anchored protein CLL_A1717 1796966 - 1797235 + | ACT domain protein TERM 2326 1797485 - 1797471 - g 71 -4.3 -4.99568 | CAATAGTAAATAAAA GAGTT TCAGT AACTC CTATATCTATAATTG CLL_A1718 1797251 - 1798606 + | hypothetical protein TERM 2327 1798642 - 1798666 + F 100 -14.5 -5.83211 | opp_overlap 1798642 TATTAAATATTTAAA CTACTCAACAA TTA TTGTTGAGTAG TTTTTTATTTTGCTC TERM 2328 1798666 - 1798642 - f 100 -14.5 -3.82208 | opp_overlap 1798642 TATTAAATATTTAAA CTACTCAACAA TTA TTGTTGAGTAG TTTTTTATTTTGCTC TERM 2329 1798707 - 1798727 + F 72 -8.5 -3.21747 | opp_overlap 1798715, overlap 1798715 GAATTTAACAGTGAG TTTAAGAAT TTT ATTCTTAAA TTAATAATAAAATCG CLL_A1719 1798892 - 1800835 + | methyl-accepting chemotaxis protein TERM 2330 1800862 - 1800878 + F 72 -8.7 -2.5661 | overlap 1800861 1800859 TAAAACTTTTTTTGT GTGCCTA GCA TGGGCAC GTATTAATTGGTATA TERM 2331 1801056 - 1801101 + F 71 -5.7 -4.61868 | opp_overlap 1801053 1801061, overlap 1801061 AACTATATAGAATTT TACAAGGTAAAAAGAAGAACT TAGT AATTTTTCTTTTTACCTTAAA TTTTATATATAGATA TERM 2332 1801096 - 1801061 - f 87 -10 -3.39005 | opp_overlap 1801056 1801061, overlap 1801053 TATAGAATTTTACAA GGTAAAAAGAAGAACT TAGT AATTTTTCTTTTTACC TTAAATTTTATATAT TERM 2333 1801061 - 1801096 + F 87 -10 -3.44377 | opp_overlap 1801053 1801061, overlap 1801056 TATAGAATTTTACAA GGTAAAAAGAAGAACT TAGT AATTTTTCTTTTTACC TTAAATTTTATATAT CLL_A1720 1801291 - 1802022 + | sigma-70, region 4 family TERM 2334 1803616 - 1803592 - g 83 -10.1 -3.31365 | opp_overlap 1803584 1803583 1803590, overlap 1803584 1803590 TACTATAGGAGAATA CTCCATTTCAA ATA TTGCAATGGAG AGCTTTTCAGTACTT CLL_A1721 1802033 - 1804078 + | multisensor signal transduction histidine kinase CLL_A1722 1804107 - 1805015 + | metal dependent phosphohydrolase, HD region with Response Regulator Receiver modulation TERM 2335 1805118 - 1805083 - f 100 -16.6 -3.53224 | opp_overlap 1805083 1805088, overlap 1805088 CACTTTTTTTGGAAA TAAAACAATATACAAC TTAG GTTGTATATTGTTTTA TTTTTGTAGGTATTT TERM 2336 1805083 - 1805118 + F 100 -16.6 -4.92363 | opp_overlap 1805083 1805088, overlap 1805088 CACTTTTTTTGGAAA TAAAACAATATACAAC TTAG GTTGTATATTGTTTTA TTTTTGTAGGTATTT TERM 2337 1805088 - 1805113 + F 100 -12.1 -5.35224 | opp_overlap 1805088 1805083, overlap 1805083 TTTTTGGAAATAAAA CAATATACAAC TTAG GTTGTATATTG TTTTATTTTTGTAGG TERM 2338 1805113 - 1805088 - f 100 -12.1 -4.86731 | opp_overlap 1805083 1805088, overlap 1805083 TTTTTGGAAATAAAA CAATATACAAC TTAG GTTGTATATTG TTTTATTTTTGTAGG CLL_A1723 1805370 - 1808087 + | 4-hydroxyphenylacetate decarboxylase, catalytic subunit CLL_A1724 1808094 - 1808363 + | 4-hydroxyphenylacetate decarboxylase, regulatory subunit TERM 2339 1808456 - 1808491 + F 72 -7.8 -3.51232 | opp_overlap 1808461, overlap 1808461 1808482 AAGAAACTAAAAATT AAAAAGGGTATGTTAA TGTC TTAGCATATCCTTTTA TTACTTTAAAAGGGG TERM 2340 1808461 - 1808486 + F 86 -7.7 -4.84642 | opp_overlap 1808461, overlap 1808456 1808482 ACTAAAAATTAAAAA GGGTATGTTAA TGTC TTAGCATATCC TTTTATTACTTTAAA TERM 2341 1808555 - 1808575 + G 71 -2.6 -5.4148 | gap 1, overlap 1808556 1808557 TAGGTCATATGGTTG TA-CTAGCC TCAT GGCTAGCTG TTTTTTGCTTATTTG TERM 2342 1808557 - 1808572 + G 78 -9 -3.15885 | overlap 1808556 1808555 GGTCATATGGTTGTA CTAGCC TCAT GGCTAG CTGTTTTTTGCTTAT CLL_A1725 1808515 - 1809783 + | transporter, major facilitator family CLL_A1726 1809823 - 1810764 + | glycyl-radical enzyme activating protein family TERM 2343 1810887 - 1810848 - f 100 -15.4 -4.90869 | opp_overlap 1810848 ATTATTAAGTAAAAA TACAATTAAAGGAGATTA ATTG TAAACTCCTTTAATTGTA TTTTTTATTTTTAAA TERM 2344 1810848 - 1810887 + F 100 -15.4 -5.93252 | opp_overlap 1810848 ATTATTAAGTAAAAA TACAATTAAAGGAGATTA ATTG TAAACTCCTTTAATTGTA TTTTTTATTTTTAAA TERM 2345 1811128 - 1811112 - f 95 -9.5 -4.87328 | opp_overlap 1811120 TACATAAATATAAAA CAGTGAA TCT TTCACTG GAAAGTATTATTTTA CLL_A1727 1811276 - 1812145 + | DegV family protein TERM 2346 1812171 - 1812207 + F 73 -2.6 -5.72254 | opp_overlap 1812171 AGTGAAAAAATAAGG TACAATTAAAGT AAATGGATTTCAC ACTTTAATTGTA TTTTTTATTCTTTAA CLL_A1728 1812444 - 1812680 + | hypothetical protein TERM 2347 1813020 - 1813007 - g 77 -5.3 -5.06451 | GATGACTTTAAAAAA TTAGG GGAA CCTAA ATATGGATTTTTAGT TERM 2348 1814234 - 1814216 - g 71 -4 -5.01546 | AAATTTACAGAAAAA TTTTATTC AAT AAATAAAA AATTAGGCAAAAAGC CLL_A1729 1812791 - 1814761 + | radical SAM domain protein TERM 2349 1814799 - 1814842 + F 87 -10 -3.34455 | opp_overlap 1814799, overlap 1814794 TTATATTTTATAAAA CTTACGAATATATTGT CGATGAATTAAT ACAATATATTCGTAAG TTAAATTTGTAATAA TERM 2350 1814842 - 1814799 - f 100 -10 -4.41548 | opp_overlap 1814799 1814794 TTATATTTTATAAAA CTTACGAATATATTGT CGATGAATTAAT ACAATATATTCGTAAG TTAAATTTGTAATAA TERM 2351 1816751 - 1816739 - g 70 -4.9 -4.73828 | opp_overlap 1816737 ATAATCAAAAAATAA GTATT AAT AATAC TATAAATTCATTTAA CLL_A1730 1815028 - 1817034 + | membrane associated methyl-accepting chemotaxis protein TERM 2352 1817045 - 1817085 + F 100 -13.6 -3.88442 | opp_overlap 1817040 1817045 1817047, overlap 1817037 TATAAGATAATATGA TAGCCACGAAAAATGATT AAACA ACTTATTTTTCGTGGCTA TTTCATAGTATTTTA TERM 2353 1817085 - 1817045 - f 85 -11.4 -2.87018 | opp_overlap 1817045 1817037, overlap 1817040 1817047 TATAAGATAATATGA TAGCCACGAAAAATGATT AAACA ACTTATTTTTCGTGGCTA TTTCATAGTATTTTA TERM 2354 1817083 - 1817047 - f 78 -9.6 -2.97255 | opp_overlap 1817045 1817037, overlap 1817045 1817040 TAAGATAATATGATA GCCACGAAAAATGATT AAACA ACTTATTTTTCGTGGC TATTTCATAGTATTT CLL_A1731 1817359 - 1817646 + | hypothetical protein TERM 2355 1817691 - 1817670 - f 83 -9.5 -3.54029 | opp_overlap 1817674 1817675 1817682 1817684, overlap 1817675 GTTGATTAACTAGAA CAAAATCGC TAAG GCGACTTTG GAGCCGTCGATTTTT TERM 2356 1817686 - 1817675 - f 73 -5.8 -4.84492 | opp_overlap 1817674 1817675 1817682 1817684, overlap 1817670 TTAACTAGAACAAAA TCGC TAAG GCGA CTTTGGAGCCGTCGA TERM 2357 1817914 - 1817864 - f 100 -6.4 -6.01369 | opp_overlap 1817871, overlap 1817865 1817866 1817871 TAAAGAATAAAAAAA CCTTAAATTAAGGAGTGTACAA TTTTGTT TTGAACACTCCTTAATTTTAAT TAAAAATAATATTTT TERM 2358 1817913 - 1817865 - f 93 -9.9 -4.17161 | opp_overlap 1817871, overlap 1817864 1817866 1817871 AAAGAATAAAAAAAC CTTAAATTAAGGAGTGTACAA TTTTGTT TTGAACACTCCTTAATTTTAA TTAAAAATAATATTT TERM 2359 1817912 - 1817866 - f 87 -11.2 -3.06636 | opp_overlap 1817871, overlap 1817865 1817864 1817871 AAGAATAAAAAAACC TTAAATTAAGGAGTGTACAA TTTTGTT TTGAACACTCCTTAATTTTA ATTAAAAATAATATT TERM 2360 1817871 - 1817907 + F 100 -11.1 -4.41494 | opp_overlap 1817871 1817866 1817865 1817864 TAAAAAAACCTTAAA TTAAGGAGTGTACAA TTTTGTT TTGAACACTCCTTAA TTTTAATTAAAAATA TERM 2361 1817907 - 1817871 - f 100 -11.1 -3.8615 | opp_overlap 1817871, overlap 1817866 1817865 1817864 TAAAAAAACCTTAAA TTAAGGAGTGTACAA TTTTGTT TTGAACACTCCTTAA TTTTAATTAAAAATA xth 1818136 - 1818891 + | exodeoxyribonuclease III CLL_A1733 1818924 - 1819265 + | hypothetical protein TERM 2362 1819246 - 1819279 + F 71 -7 -3.93262 | AGTGTAATAAATGGC TTATAGATATATTG GAATAA CAGTGTATCTATAA TTTCATATATTACAA CLL_A1734 1819316 - 1820425 + | lysophospholipase l2 pldb, hydrolase of alpha/beta superfamily CLL_A1735 1820689 - 1822647 + | tetracycline resistance protein TetP, contain GTP-ase domain TERM 2363 1822778 - 1822801 + F 73 -2.5 -5.69473 | overlap 1822770 TTATATATAAAGATA GAAGTATTG AAATGG CAATGTTTC TTTTTTTATCATATA CLL_A1736 1822963 - 1823196 + | hypothetical protein TERM 2364 1823209 - 1823239 + F 100 -10.6 -4.52857 | opp_overlap 1823207 1823212, overlap 1823212 TAAAAAAATTAAATT AAAGCGATACTAAT CAA GTTAGTATCGCTTG TTTTATATAGAAAGT TERM 2365 1823236 - 1823212 - f 100 -11.6 -4.21644 | opp_overlap 1823212 1823209, overlap 1823207 AAAAATTAAATTAAA GCGATACTAA TCAAG TTAGTATCGC TTGTTTTATATAGAA TERM 2366 1823212 - 1823236 + F 100 -12.3 -4.38141 | opp_overlap 1823207 1823212, overlap 1823209 AAAAATTAAATTAAA GCGATACTAAT CAA GTTAGTATCGC TTGTTTTATATAGAA TERM 2367 1823583 - 1823529 - f 83 -7.4 -4.97405 | opp_overlap 1823528 1823530 1823539, overlap 1823530 1823532 ACTTATAAAAATAAA GCATAGAAAACATACTTATGTATAAA CTA TATTGACATAAGTATGTTTTCTAGGT ATTATATAAATCATA TERM 2368 1823582 - 1823530 - f 95 -10.9 -3.56816 | opp_overlap 1823530 1823528 1823539, overlap 1823529 1823532 CTTATAAAAATAAAG CATAGAAAACATACTTATGTATAAA CTA TATTGACATAAGTATGTTTTCTAGG TATTATATAAATCAT TERM 2369 1823530 - 1823582 + F 93 -11.1 -3.33792 | gap 1, opp_overlap 1823529 1823530 1823532, overlap 1823528 1823539 CTTATAAAAATAAAG CATAGAAAACATACTTATGTATAA ACTATA TTG-ACATAAGTATGTTTTCTAGG TATTATATAAATCAT TERM 2370 1823580 - 1823532 - f 95 -12.1 -3.34078 | opp_overlap 1823530 1823528 1823539, overlap 1823530 1823529 TATAAAAATAAAGCA TAGAAAACATACTTATGTATAAA CTA TATTGACATAAGTATGTTTTCTA GGTATTATATAAATC TERM 2371 1824969 - 1824946 - g 71 -8.2 -3.30781 | overlap 1824949 TTAATGTAAATGGAA CAATGGTAAC AACA GTTACCGTTG CAAATAGTTTTGATA CLL_A1737 1823640 - 1825019 + | sodium:dicarboxylate symporter family protein TERM 2372 1825014 - 1825004 - f 80 -2.6 -6.04953 | AGATAAAGAAAAAAA TATT AAT AATA AGTAAAAAGATCCCC TERM 2373 1825025 - 1825062 + F 83 -10.9 -2.65298 | opp_overlap 1825025, overlap 1825024 1825041 TAATAAGTAAAAAGA TCCCCTTAGAATATA GTATAGTG TATATTTTAAGGGGA ATTCTAATCAATAGA TERM 2374 1825062 - 1825025 - f 82 -8.7 -4.11092 | opp_overlap 1825025 1825024 1825041 TAATAAGTAAAAAGA TCCCCTTAGAATATA GTATAGTG TATATTTTAAGGGGA ATTCTAATCAATAGA CLL_A1738 1825405 - 1825710 + | hypothetical protein TERM 2375 1825756 - 1825744 - f 70 -4.9 -4.74801 | CAATTTTATTAAAAA CTATA AAA TATAG ATTAATAGAAAAGCA CLL_A1739 1826267 - 1827430 + | alcohol dehydrogenase, iron-containing CLL_A1740 1827784 - 1828602 + | propanediol utilization protein PduB CLL_A1741 1828666 - 1829166 + | putative propanediol utilization protein CLL_A1742 1829182 - 1829460 + | propanediol utilization protein PduA CLL_A1743 1829565 - 1829843 + | propanediol utilization protein PduA CLL_A1744 1829869 - 1830525 + | propanediol utilization protein TERM 2376 1830689 - 1830677 - g 77 -7.7 -4.24149 | overlap 1830671 TGACGAAAATAACAA TCCAG TAG CTGGA GCATCATATCCAGCA TERM 2377 1831139 - 1831128 - g 81 -3 -5.75538 | opp_overlap 1831128, overlap 1831122 CCTAAAAAAGAAAAA GATA ATTT TATC CTTATCAAACCGGTT CLL_A1745 1830528 - 1831349 + | ethanolamine utilization protein EutJ CLL_A1746 1831360 - 1832208 + | putative phosphopantothenate--cysteine ligase CLL_A1747 1832218 - 1832490 + | ethanolamine utilization protein EutN CLL_A1748 1832509 - 1834002 + | ethanolamine utilization protein EutE CLL_A1749 1834020 - 1835345 + | ethanolamine utilization Fe-S center protein eut CLL_A1750 1835370 - 1835918 + | ethanolamine utilization protein EutM CLL_A1751 1837318 - 1836119 - | dhha1 domain protein CLL_A1752 1837457 - 1837981 + | hypothetical protein TERM 2378 1838109 - 1838077 - T 84 -9.5 -3.82789 | opp_overlap 1838087, overlap 1838081 AAGATAAATAGATAA TGTATGTAAATATTA AAA TAATATTTACATAAA AACCAAGAACTTTAA TERM 2379 1838105 - 1838081 - T 81 -10.3 -2.67406 | opp_overlap 1838087, overlap 1838077 TAAATAGATAATGTA TGTAAATATTA AAA TAATATTTACA TAAAAACCAAGAACT CLL_A1753 1838352 - 1838194 - | hypothetical protein CLL_A1754 1838521 - 1838922 + | hypothetical protein TERM 2380 1838988 - 1838965 - f 73 -7 -4.03183 | opp_overlap 1838964 1838965 1838967, overlap 1838960 ATGTACAAAATATAA TATAATAAAA AATA TTTTATTATA ATTTGTGAGCAATTA CLL_A1755 1839016 - 1839288 + | hypothetical protein TERM 2381 1839351 - 1839320 - f 70 -7.4 -3.66883 | opp_overlap 1839320 TTAATATAGTGTAAA TGCATAGTGTGTTA TTTT TTACATACTATGCA TTTTATTTTTATGCT TERM 2382 1839320 - 1839351 + F 100 -9.6 -5.3658 | opp_overlap 1839320 TTAATATAGTGTAAA TGCATAGTGTGTTA TTTT TTACATACTATGCA TTTTATTTTTATGCT CLL_A1756 1839832 - 1840539 + | regulatory protein VanR CLL_A1757 1840523 - 1842733 + | two-component sensor histidine kinase TERM 2383 1842811 - 1842753 - f 86 -8.7 -4.38369 | gap 1, opp_overlap 1842754 1842772, overlap 1842756 1842757 1842772 TAATTAAAGAAATAA TA-AGTTAAGTAACAAAAAAGAATCTAT TTTT ATAGGTTCTTTTTTGTTACTTAAAGATA CTATAGAATTATTAG TERM 2384 1842754 - 1842809 + F 86 -11.6 -2.65538 | opp_overlap 1842753 1842756 1842757 1842772, overlap 1842772 AATTAAAGAAATAAT AAGTTAAGTAACAAAAAAGAATCTAT TTTT ATAGGTTCTTTTTTGTTACTTAAAGA TACTATAGAATTATT TERM 2385 1842807 - 1842756 - f 100 -16.4 -4.26693 | opp_overlap 1842754 1842772, overlap 1842753 1842757 1842772 TTAAAGAAATAATAA GTTAAGTAACAAAAAAGAATCTAT TTTT ATAGGTTCTTTTTTGTTACTTAAA GATACTATAGAATTA TERM 2386 1842806 - 1842757 - f 100 -19.9 -3.14389 | opp_overlap 1842754 1842772, overlap 1842756 1842753 1842772 TAAAGAAATAATAAG TTAAGTAACAAAAAAGAATCTAT TTTT ATAGGTTCTTTTTTGTTACTTAA AGATACTATAGAATT TERM 2387 1842791 - 1842772 - f 75 -3.6 -5.5604 | opp_overlap 1842754 1842772, overlap 1842757 1842756 1842753 TTAAGTAACAAAAAA GAATCTAT TTTT ATAGGTTC TTTTTTGTTACTTAA TERM 2388 1842772 - 1842791 + F 82 -5.8 -5.5604 | opp_overlap 1842772 1842757 1842756 1842753, overlap 1842754 TTAAGTAACAAAAAA GAATCTAT TTTT ATAGGTTC TTTTTTGTTACTTAA TERM 2389 1843358 - 1843387 + F 100 -8.7 -5.4148 | opp_overlap 1843358 1843363, overlap 1843363 ATAGTATGAGAATAT TTAAAGCTTCACT ATTG GGTGAAGCTTTTA TTTTTTAATTCTTTA TERM 2390 1843363 - 1843382 + F 100 -8.6 -5.47846 | opp_overlap 1843358 1843363, overlap 1843358 ATGAGAATATTTAAA GCTTCACT ATTG GGTGAAGC TTTTATTTTTTAATT TERM 2391 1843382 - 1843363 - f 73 -7.9 -3.79473 | opp_overlap 1843363 1843358, overlap 1843358 ATGAGAATATTTAAA GCTTCAC TATTGG GTGAAGC TTTTATTTTTTAATT CLL_A1758 1843532 - 1844839 + | Na+/H+ antiporter TERM 2392 1844862 - 1844880 + F 100 -9.6 -5.72207 | opp_overlap 1844862 GTAATTTATACAGAA GCAGATGG TAT TCATCTGC TTTTTTTACTTTAAC TERM 2393 1844880 - 1844862 - f 79 -8.9 -3.61983 | opp_overlap 1844862 GTAATTTATACAGAA GCAGATG GTATT CATCTGC TTTTTTTACTTTAAC CLL_A1759 1845029 - 1846474 + | putative serine esterase TERM 2394 1846477 - 1846532 + T 77 -6.5 -4.64676 | opp_overlap 1846484, overlap 1846480 1846482 1846484 TAAAGGGTTTTAATT AAAAAAAGACAGTATATAATTTTGT TTTCAC ACAAAACTATATACTGTCTCTATTC TTTTCTTAACCATCC TERM 2395 1846480 - 1846529 + T 82 -8.2 -4.43307 | opp_overlap 1846484, overlap 1846477 1846482 1846484 AGGGTTTTAATTAAA AAAAGACAGTATATAATTTTGT TTTCAC ACAAAACTATATACTGTCTCTA TTCTTTTCTTAACCA TERM 2396 1846482 - 1846527 + T 91 -10.8 -3.8165 | opp_overlap 1846484, overlap 1846480 1846477 1846484 GGTTTTAATTAAAAA AAGACAGTATATAATTTTGT TTTCAC ACAAAACTATATACTGTCTC TATTCTTTTCTTAAC TERM 2397 1846525 - 1846484 - T 100 -15.6 -5.63103 | opp_overlap 1846484 1846482 1846480 1846477 TTTTAATTAAAAAAA GACAGTATATAATTTTGT TTTCAC ACAAAACTATATACTGTC TCTATTCTTTTCTTA TERM 2398 1846484 - 1846525 + T 100 -13.4 -3.47488 | opp_overlap 1846484, overlap 1846482 1846480 1846477 TTTTAATTAAAAAAA GACAGTATATAATTTTGT TTTCAC ACAAAACTATATACTGTC TCTATTCTTTTCTTA CLL_A1760 1847111 - 1846527 - | chap domain containing protein CLL_A1761 1847378 - 1847875 + | ribosomal-protein-alanine acetyltransferase TERM 2399 1848194 - 1848172 - g 72 -6.4 -4.33808 | opp_overlap 1848175, overlap 1848175 1848180 GAAATGAACCTAAAA CAATAGAATC AAA GATTCTATTT GATGCAGATAAACTT TERM 2400 1848191 - 1848175 - g 81 -8.1 -4.26461 | opp_overlap 1848175, overlap 1848172 1848180 ATGAACCTAAAACAA TAGAATC AAA GATTCTA TTTGATGCAGATAAA TERM 2401 1848175 - 1848191 + G 76 -8.1 -3.73775 | opp_overlap 1848172 1848175 1848180 ATGAACCTAAAACAA TAGAATC AAA GATTCTA TTTGATGCAGATAAA CLL_A1762 1847889 - 1848500 + | metal-dependent phosphohydrolase, HD superfamily CLL_A1763 1848612 - 1848977 + | hypothetical protein CLL_A1764 1849118 - 1850611 + | hypothetical protein TERM 2402 1850707 - 1850672 - f 80 -9.2 -3.19048 | overlap 1850671 1850673 1850704 CGTCAAGTAAGAAAG TCTGTTTATCTCATAG CTGG CTATTAGATAAACAGT ATAAAAATACCGATG TERM 2403 1850706 - 1850673 - f 89 -12.7 -2.50947 | overlap 1850672 1850671 1850704 GTCAAGTAAGAAAGT CTGTTTATCTCATAG CTGG CTATTAGATAAACAG TATAAAAATACCGAT CLL_A1765 1850805 - 1851386 + | hypothetical protein TERM 2404 1851536 - 1851564 + F 74 -6.1 -4.65032 | gap 1, overlap 1851539 TGAATGTGTAAAACC TGTGACCTCGGA ATGACC TCTGAGGTC-CA TTTATTTATAGTTTA TERM 2405 1851539 - 1851562 + F 72 -8.9 -2.60809 | overlap 1851536 ATGTGTAAAACCTGT GACCTCGGA ATGACC TCTGAGGTC CATTTATTTATAGTT CLL_A1766 1851889 - 1852020 + | hypothetical protein TERM 2406 1852064 - 1852030 - f 87 -7.1 -5.13016 | opp_overlap 1852030 AATTAAAATTAAAAA GCTAGTAAGCAAGGG CAAGT CCCAAGTTTACTAGC TTTCTTTAGTGGAGG TERM 2407 1852030 - 1852064 + F 93 -9.3 -4.49556 | opp_overlap 1852030 AATTAAAATTAAAAA GCTAGTAAGCAAGGG CAAGT CCCAAGTTTACTAGC TTTCTTTAGTGGAGG CLL_A1768 1852452 - 1852967 + | hypothetical protein CLL_A1769 1853209 - 1853970 + | hypothetical protein TERM 2408 1853954 - 1853980 + T 76 -2.5 -5.95539 | opp_overlap 1853976 CAGTAGTTAAGAGTA TAATATTTGAT AGATA ATTAAATGTTA TTTTTTTGTTTAAAA TERM 2409 1854202 - 1854167 - T 72 -6.3 -4.47161 | opp_overlap 1854166 1854168, overlap 1854168 AAATAATAAAAAATA GGACCTGCATAAA TCATATTACC TTTATGCAGGTCT GTTTCTTATATAAGT TERM 2410 1854168 - 1854201 + T 90 -9.8 -3.79864 | opp_overlap 1854167 1854168, overlap 1854166 AATAATAAAAAATAG GACCTGCATAAA TCATATTACC TTTATGCAGGTC TGTTTCTTATATAAG TERM 2411 1854201 - 1854168 - T 85 -9.8 -3.24636 | opp_overlap 1854168 1854166, overlap 1854167 AATAATAAAAAATAG GACCTGCATAAA TCATATTACC TTTATGCAGGTC TGTTTCTTATATAAG CLL_A1770 1854570 - 1854208 - | membrane protein CLL_A1771 1854782 - 1854964 + | hypothetical protein TERM 2412 1855020 - 1855044 + F 100 -11.7 -5.06414 | opp_overlap 1855006 1855020 1855010 ATAAATATATATAAA GTAGATATATT TAA AATATATCTAC TTTTTGTTAAAAACA TERM 2413 1855044 - 1855020 - f 100 -11.7 -4.25527 | opp_overlap 1855020, overlap 1855006 1855010 ATAAATATATATAAA GTAGATATATT TAA AATATATCTAC TTTTTGTTAAAAACA TERM 2414 1855401 - 1855377 - g 71 -8.1 -3.25479 | overlap 1855381 1855384 GGAGCAAAGATGTAA TCAATAACATT AAT AATATTATTGA GAAATTAGTATTTAT CLL_A1772 1855130 - 1855693 + | hypothetical protein CLL_A1773 1855927 - 1856541 + | superoxide dismutase (Mn) TERM 2415 1856594 - 1856631 + F 100 -8.8 -6.01369 | opp_overlap 1856596, overlap 1856589 GAAATTAACTTGAGA TACTCATTAAATAC TGCAATTTAT GTATTTAATGAGTA TTTTTTTGTTCTTTA TERM 2416 1856709 - 1856681 - f 73 -6.9 -4.20918 | opp_overlap 1856681 1856685 1856688, overlap 1856685 TGGAATTTTAATAAA TAAACCTTAATTA AAT TATTTAAGGTCTA TTTAAGGTTAGCATT TERM 2417 1856705 - 1856685 - f 71 -5.5 -4.68209 | opp_overlap 1856681 1856685 1856688, overlap 1856681 ATTTTAATAAATAAA CCTTAATTA AAT TATTTAAGG TCTATTTAAGGTTAG CLL_A1774 1856806 - 1857831 + | hypothetical protein CLL_A1775 1857847 - 1858734 + | ABC transporter, ATP-binding protein CLL_A1776 1858740 - 1859513 + | putative ABC transporter, permease protein TERM 2418 1859579 - 1859569 - f 79 -4 -5.66684 | TAAGTTATAAAAAAA TTGT CGA ACAA TAAAAATAAATGAAA TERM 2419 1859732 - 1859703 - g 70 -8 -2.98169 | opp_overlap 1859702 1859701 1859705, overlap 1859705 TTAATAATGTATATA CAGCTAAAACTT TAAAGG AAGGTTTAGCTG AGTTTAATAGGGTAA TERM 2420 1860260 - 1860243 - g 71 -2.7 -5.48063 | overlap 1860248 AGCTAAGAGAAAAAA TAGAAGA TGAC TCATCTA ATCCCAAATATATTC CLL_A1777 1859609 - 1860322 + | regulatory protein VanR TERM 2421 1860796 - 1860778 - g 76 -9 -3.11256 | opp_overlap 1860781, overlap 1860776 1860781 ATAACAAAGTAGAGA GAATAACT GTA AGTTATTC TATGGATACAATTAT TERM 2422 1861258 - 1861230 - g 70 -8.3 -2.96792 | overlap 1861229 1861227 AAATATATAAAAGAG CTTGTAGATGAAC TTA ATTTATCTACAAG GTTAAAGAATAATGC CLL_A1778 1860324 - 1861730 + | two-component sensor histidine kinase CLL_A1779 1861834 - 1862652 + | TraX protein TERM 2423 1862703 - 1862665 - T 93 -7.1 -5.69473 | gap 1, opp_overlap 1862665 TAGAGTATAAAAAAA GATATATCAAATTTGTTA TTAC TAACAT-TTTGATATATC TTTTTATGCATATTT TERM 2424 1862665 - 1862703 + T 83 -7.1 -4.92363 | gap 1, opp_overlap 1862665 TAGAGTATAAAAAAA GATATATCAAATTTGTTA TTAC TAACAT-TTTGATATATC TTTTTATGCATATTT CLL_A1780 1862905 - 1862717 - | methyl-accepting chemotaxis protein CLL_A1781 1865196 - 1863046 - | ferrous iron transport protein B TERM 2425 1865001 - 1865018 + g 74 -6.3 -4.56775 | opp_overlap 1864994 TATGAATATACTTCC CAGTAGC ATTA GTTACTG TTTTTCCAGGCCAGT CLL_A1782 1865522 - 1865271 - | hypothetical protein CLL_A1783 1865676 - 1866155 + | putative iron-dependent repressor TERM 2426 1866248 - 1866217 - f 77 -7 -4.42974 | gap 1 GTTATATACAAGAAA TTTTAGT-TTTATTT GTA AAATAAATACTAAAA GCATATAATTAAATA CLL_A1784 1866290 - 1866802 + | choline binding protein G TERM 2427 1866819 - 1866838 + F 95 -7.2 -5.84011 | CTTATTAATCATTTA GGATCTTG TAAT TAAGATCC TTTTTATTTTTTCTT CLL_A1785 1867201 - 1867521 + | hypothetical protein TERM 2428 1867913 - 1867871 - Tf 100 -16.6 -4.55209 | opp_overlap 1867871 1867875, overlap 1867875 TATATATTAAATAAA CAAAGTGCCTAAAAGTGATT TAA AGTCATTTTTAGGCACTTTG TTTTTATGAATTAGT TERM 2429 1867871 - 1867913 + TF 100 -21 -4.92314 | opp_overlap 1867871 1867875, overlap 1867875 TATATATTAAATAAA CAAAGTGCCTAAAAGTGATT TAA AGTCATTTTTAGGCACTTTG TTTTTATGAATTAGT TERM 2430 1867875 - 1867909 + TF 100 -16 -4.97405 | opp_overlap 1867875 1867871, overlap 1867871 TATTAAATAAACAAA GTGCCTAAAAGTGATT TAA AGTCATTTTTAGGCAC TTTGTTTTTATGAAT TERM 2431 1867909 - 1867875 - Tf 100 -11.6 -4.80736 | opp_overlap 1867871 1867875, overlap 1867871 TATTAAATAAACAAA GTGCCTAAAAGTGATT TAA AGTCATTTTTAGGCAC TTTGTTTTTATGAAT CLL_A1786 1868515 - 1868375 - | hypothetical protein CLL_A1787 1868484 - 1869626 + | FliB family protein TERM 2432 1869815 - 1869786 - fH 100 -12.5 -6.28401 | opp_overlap 1869786 GAAAAAAGAAAAAAA TATAGAAAATTTC TCTT GAAATTTTCTATA TTTTTGTATATTATT TERM 2433 1869786 - 1869815 + FH 100 -12.5 -5.1383 | opp_overlap 1869786 GAAAAAAGAAAAAAA TATAGAAAATTTC TCTT GAAATTTTCTATA TTTTTGTATATTATT amyB 1870103 - 1871758 + | beta-amylase TERM 2434 1871773 - 1871803 + T 77 -7.7 -4.17263 | gap 1, opp_overlap 1871777, overlap 1871774 1871777 AAATTTATCATACAC TA-AAGGCTGTTGC AAAA GCAACAGCCTAATA TTTATCTACTTATTA TERM 2435 1871774 - 1871801 + T 76 -8.4 -3.66719 | opp_overlap 1871777, overlap 1871773 1871777 AATTTATCATACACT AAAGGCTGTTGC AAAA GCAACAGCCTAA TATTTATCTACTTAT TERM 2436 1871777 - 1871798 + T 100 -14.5 -2.92896 | opp_overlap 1871777, overlap 1871774 1871773 TTATCATACACTAAA GGCTGTTGC AAAA GCAACAGCC TAATATTTATCTACT TERM 2437 1871798 - 1871777 - T 100 -14.5 -3.89956 | opp_overlap 1871774 1871773 1871777 TTATCATACACTAAA GGCTGTTGC AAAA GCAACAGCC TAATATTTATCTACT CLL_A1789 1872427 - 1871828 - | hypothetical protein TERM 2438 1872386 - 1872356 - G 74 -9.2 -2.89683 | opp_overlap 1872356 1872354 ATCTGAGTTTACATA TTTTGCTAAATCAT AAA ACGCTTTAGCAAAA TCTTCTGGTGGAGCA CLL_A1790 1872581 - 1873222 + | hypothetical protein TERM 2439 1873264 - 1873206 - T 80 -6.3 -5.25906 | opp_overlap 1873217 1873256, overlap 1873200 1873207 1873217 1873254 1873255 ACAAACCAACAAAAA GTATTTTTAAATTATAGGCTGACTTTT AATAA AATAGTCAGCCTATAATTTTATAGTAA TAAAAATCACTATAA TERM 2440 1873263 - 1873207 - T 90 -9.8 -3.73104 | opp_overlap 1873217 1873256, overlap 1873200 1873206 1873217 1873254 1873255 CAAACCAACAAAAAG TATTTTTAAATTATAGGCTGACTTTT AATAA AATAGTCAGCCTATAATTTTATAGTA ATAAAAATCACTATA TERM 2441 1873217 - 1873253 + T 100 -14 -4.4891 | opp_overlap 1873217 1873207 1873206 AAAAGTATTTTTAAA TTATAGGCTGACTTTT AATAA AATAGTCAGCCTATAA TTTTATAGTAATAAA TERM 2442 1873253 - 1873217 - T 100 -14 -3.60431 | opp_overlap 1873217, overlap 1873207 1873206 AAAAGTATTTTTAAA TTATAGGCTGACTTTT AATAA AATAGTCAGCCTATAA TTTTATAGTAATAAA CLL_A1791 1873676 - 1873290 - | colossin A TERM 2443 1874034 - 1873996 - g 78 -9.1 -3.20858 | opp_overlap 1873988 1874033 CAGTAGATTTATTAA CATCATATTCTTATTTG GAAAA CAATTACGAATATGATG GCGATAGATATATTG CLL_A1792 1873848 - 1874621 + | putative PHP domain CLL_A1793 1874707 - 1875198 + | ErfK/YbiS/YcfS/YnhG family TERM 2444 1875946 - 1875961 + G 74 -4 -5.29782 | TATAGATTTAAAGAA GGGAAA TATA TTTCTC TTTTTTATAGATATA CLL_A1794 1875436 - 1876041 + | nudix-family protein CLL_A1795 1876363 - 1876566 + | hypothetical protein TERM 2445 1876805 - 1876831 + F 100 -12.5 -4.84527 | opp_overlap 1876805 TCAGTTACTAGGAAA GAGCAAACATT GATAA AATGTTTGCTC TTTTTGCTGTGTAGA TERM 2446 1876831 - 1876805 - f 95 -12.5 -3.79747 | opp_overlap 1876805 TCAGTTACTAGGAAA GAGCAAACATT GATAA AATGTTTGCTC TTTTTGCTGTGTAGA CLL_A1796 1877024 - 1878922 + | signal-transduction and transcriptional-control protein TERM 2447 1879001 - 1878991 - f 82 -5.4 -5.626 | opp_overlap 1878996, overlap 1878966 1878994 1878996 TATTGTATAAAAAAA CAAC AGT GTTG CAAAATACAACAATA TERM 2448 1879049 - 1878994 - f 100 -16.6 -4.89054 | opp_overlap 1878996 1879022, overlap 1878991 1878996 1879029 TGTATAAAAAAACAA CAGTGTTGCAAAATACAACAATATTT ATTA AAAAAGTGTTGTATTTTGCAACACTT TTTTATTTTAAATTT TERM 2449 1879047 - 1878996 - f 100 -19.2 -4.04185 | opp_overlap 1878996 1879022, overlap 1878991 1878994 1879029 TATAAAAAAACAACA GTGTTGCAAAATACAACAATATTT ATTA AAAAAGTGTTGTATTTTGCAACAC TTTTTTATTTTAAAT TERM 2450 1878996 - 1879047 + F 100 -19.2 -5.80951 | opp_overlap 1878991 1878994 1878996 1879029, overlap 1879022 TATAAAAAAACAACA GTGTTGCAAAATACAACAATATTT ATTA AAAAAGTGTTGTATTTTGCAACAC TTTTTTATTTTAAAT TERM 2451 1879022 - 1879054 + F 100 -14.5 -4.4595 | opp_overlap 1878996 1878994 1879029, overlap 1878996 TACAACAATATTTAT TAAAAAAGTGTTGTA TTT TGCAACACTTTTTTA TTTTAAATTTTATAG TERM 2452 1879047 - 1879029 - f 80 -6 -5.17353 | opp_overlap 1878996 1879022, overlap 1878996 1878994 ATATTTATTAAAAAA GTGTTGTA TTT TGCAACAC TTTTTTATTTTAAAT TERM 2453 1879158 - 1879114 - f 78 -6 -4.9218 | opp_overlap 1879114 1879118 1879124 1879129, overlap 1879116 TATTTATTAGAAAAA TGGCCTTATACATAAGTTTT TATAG AAAACTTATGTATAATGAAA TTTAAAAATTAAAAT TERM 2454 1879124 - 1879148 + F 76 -9.5 -2.81966 | opp_overlap 1879116 1879114, overlap 1879118 1879114 1879129 AAAAATGGCCTTATA CATAAGTTTTT ATA GAAAACTTATG TATAATGAAATTTAA adh 1879300 - 1880355 + | NADP-dependent alcohol dehydrogenase TERM 2455 1880398 - 1880369 - f 93 -9.5 -4.40037 | opp_overlap 1880369 AAATAACTATTAAAA TATTACTGGAGAT TTTA ATTTCCAGTAATA TTTTTTATTTAGAAA TERM 2456 1880369 - 1880398 + F 100 -11.7 -5.63517 | opp_overlap 1880369 AAATAACTATTAAAA TATTACTGGAGAT TTTA ATTTCCAGTAATA TTTTTTATTTAGAAA CLL_A1798 1880513 - 1881709 + | hypothetical protein TERM 2457 1882681 - 1882669 - g 77 -4.9 -5.2015 | GGAAGAATACAAAAA TGATA ATT TATCA AGGGCGCAAGAAATT CLL_A1799 1881854 - 1883215 + | hypothetical protein TERM 2458 1883356 - 1883387 + F 83 -6.7 -5.26119 | opp_overlap 1883342, overlap 1883340 1883358 ACATTAAATGTTTTT AATGGGATATATC TTTATT GGTATATCCCATA TTTTATTTTTAGGAG TERM 2459 1883358 - 1883385 + F 89 -9.3 -4.25502 | opp_overlap 1883342, overlap 1883340 1883356 ATTAAATGTTTTTAA TGGGATATATC TTTATT GGTATATCCCA TATTTTATTTTTAGG cytX 1883412 - 1884614 + | probable hydroxymethylpyrimidine transporter CytX TERM 2460 1884631 - 1884667 + F 87 -6.8 -5.36441 | opp_overlap 1884631 1884626 TATATAATATGAAAA CAAATAAAGTAGACTG AAAGG CATTTTGCTTTATTTG TTTTTTATGTGAAAC CLL_A1801 1884779 - 1885426 + | pentapeptide repeat protein TERM 2461 1885445 - 1885465 + F 75 -8.5 -3.51934 | opp_overlap 1885448, overlap 1885448 TAAAAAATATGTGAG TAATAGAAA TAC TTTCTATTA TATTTATAAGGAGAA CLL_A1802 1885486 - 1885713 + | hypothetical protein CLL_A1803 1885856 - 1887076 + | hypothetical protein cmk 1887173 - 1887826 + | cytidylate kinase CLL_A1805 1887855 - 1889762 + | 4-hydroxy-3-methylbut-2-enyl diphosphate reductase TERM 2462 1889812 - 1889784 - f 100 -7.5 -5.38958 | opp_overlap 1889784 ATGTATAAATAAAAA GAACCTCAATATA ATT TATATAGGGGTTC TTTTTATTTTGAAAA TERM 2463 1889784 - 1889812 + F 100 -9.7 -5.45802 | opp_overlap 1889784 ATGTATAAATAAAAA GAACCTCAATATA ATT TATATAGGGGTTC TTTTTATTTTGAAAA CLL_A1806 1889908 - 1890765 + | acetyltransferase CLL_A1807 1890810 - 1891088 + | hypothetical protein TERM 2464 1891301 - 1891356 + F 100 -13.8 -3.19463 | opp_overlap 1891304, overlap 1891302 1891314 1891319 ATCTACATTAAAAAT AAATACTGTATAATAAAAGACTTATA ATCC TATAAGTCTTTTATTATACAGTAAGA TTAATAGATCATAGA TERM 2465 1891302 - 1891355 + F 100 -17.3 -2.51464 | opp_overlap 1891304, overlap 1891301 1891314 1891319 TCTACATTAAAAATA AATACTGTATAATAAAAGACTTATA ATCC TATAAGTCTTTTATTATACAGTAAG ATTAATAGATCATAG TERM 2466 1891353 - 1891304 - f 100 -24.3 -4.94262 | opp_overlap 1891302 1891301 1891314 1891319 TACATTAAAAATAAA TACTGTATAATAAAAGACTTATA ATCC TATAAGTCTTTTATTATACAGTA AGATTAATAGATCAT TERM 2467 1891314 - 1891343 + F 95 -12.5 -3.3334 | opp_overlap 1891304, overlap 1891302 1891301 1891319 ATAAATACTGTATAA TAAAAGACTTATA ATCC TATAAGTCTTTTA TTATACAGTAAGATT TERM 2468 1891319 - 1891338 + F 86 -8 -4.78237 | opp_overlap 1891304, overlap 1891314 1891302 1891301 TACTGTATAATAAAA GACTTATA ATCC TATAAGTC TTTTATTATACAGTA miaB 1891534 - 1892904 + | tRNA-I(6)A37 thiotransferase enzyme MiaB TERM 2469 1892929 - 1892964 + T 83 -7.8 -4.57581 | opp_overlap 1892925 1892929 GGGGTATTAGACAAA CTGTATTAGGATTAAT AAAT AATAATCTTAATGCAG TTTATTATTTGGAAT TERM 2470 1893114 - 1893165 + T 100 -26.4 -4.0683 | opp_overlap 1893114 AATCTTTTTATGAAA GTGCCATTTTTGCGTATATAGAAC ATAT GTTCTGTATACGTAAAAATGGCAC TTTCTAAGTTTGTTT TERM 2471 1893165 - 1893114 - T 100 -22 -3.73072 | opp_overlap 1893114 AATCTTTTTATGAAA GTGCCATTTTTGCGTATATAGAAC ATAT GTTCTGTATACGTAAAAATGGCAC TTTCTAAGTTTGTTT TERM 2472 1893245 - 1893204 - T 85 -10.6 -2.96288 | opp_overlap 1893205 1893209, overlap 1893209 TAAATATAAATAGCA TTAAATACAGATAATTAT CAAAAT ATAATTATCTGTATTTAT CATTTCTACTAATGT TERM 2473 1893205 - 1893244 + T 100 -14.1 -3.04836 | opp_overlap 1893204 1893209, overlap 1893209 AAATATAAATAGCAT TAAATACAGATAATTAT CAAAAT ATAATTATCTGTATTTA TCATTTCTACTAATG TERM 2474 1893209 - 1893240 + T 95 -10.5 -4.18303 | opp_overlap 1893204 1893209, overlap 1893205 ATAAATAGCATTAAA TACAGATAATTAT CAAAAT ATAATTATCTGTA TTTATCATTTCTACT TERM 2475 1893240 - 1893209 - T 95 -10.5 -3.87438 | opp_overlap 1893209 1893205, overlap 1893204 ATAAATAGCATTAAA TACAGATAATTAT CAAAAT ATAATTATCTGTA TTTATCATTTCTACT ybaK 1893743 - 1893264 - | YbaK/ebsC protein TERM 2476 1893499 - 1893515 + g 77 -5.1 -5.24989 | overlap 1893501 TCAATACTTTTTTCA GATGCAA CTT TTGCAGC TTTTTTCATGTCTAG TERM 2477 1894342 - 1894373 + H 100 -16.2 -3.35867 | AAAAATCGCTTAATT TTATTTCGGGAAAT ATAC ATTTCCCGAAATAA TTGATTAAAAATTCA CLL_A1810 1894459 - 1895448 + | site-specific recombinase, phage integrase family TERM 2478 1895471 - 1895507 + T 79 -8.4 -4.13767 | opp_overlap 1895471 TCTCCTACTAAAAAA TCTCTATTATTATA TTTTTAGTT TATAATAATAGAGA TTTTAAAATGACAAG TERM 2479 1895507 - 1895471 - T 95 -8.4 -5.14563 | opp_overlap 1895471 TCTCCTACTAAAAAA TCTCTATTATTATA TTTTTAGTT TATAATAATAGAGA TTTTAAAATGACAAG CLL_A1811 1896085 - 1895564 - | putative lipoprotein TERM 2480 1896247 - 1896214 - R 82 -5.5 -5.50925 | AACTAATATAAAAAA GATGAAATAACTC ATAAAACA AAGCTATTTCATC CAATACATTTTAAAT CLL_A1812 1896748 - 1896257 - | putative lipoprotein CLL_A1813 1897249 - 1896818 - | conserved protein containing Zn-finger domain lexA 1897413 - 1898018 + | LexA repressor TERM 2481 1898121 - 1898154 + T 100 -10.5 -5.48063 | opp_overlap 1898118 TCTAAAAAGTTATGA GCTGAAATACTAAGT TATA ATGTAGTATTTCAGC TTTTTTATGTTCAGT CLL_A1815 1899485 - 1898196 - | aluminium resistance protein TERM 2482 1898917 - 1898935 + g 80 -8.2 -4.2109 | AAGAAAGATTTTCTA GAAGCATA TCC TGTGCTTC TTTGTATATGTATTA TERM 2483 1899053 - 1899067 + g 74 -2.8 -5.60993 | opp_overlap 1899048, overlap 1899048 TTATATTATATTCAT CTAATG AAC CTTTAG TTTTTTTATCAGCAA TERM 2484 1899527 - 1899564 + r 100 -14.5 -3.02023 | opp_overlap 1899519 1899533 1899537, overlap 1899533 1899537 ATAAATATATTTTCT CAAAAATAAATAGGCAA TTAA TTGCCTATTTATTTTAG CTTTCATTATCTACA TERM 2485 1899533 - 1899558 + r 100 -12.1 -4.39318 | opp_overlap 1899519 1899533 1899537, overlap 1899527 1899537 ATATTTTCTCAAAAA TAAATAGGCAA TTAA TTGCCTATTTA TTTTAGCTTTCATTA TERM 2486 1899558 - 1899533 - R 100 -12.1 -4.57837 | opp_overlap 1899533 1899527 1899537, overlap 1899519 1899537 ATATTTTCTCAAAAA TAAATAGGCAA TTAA TTGCCTATTTA TTTTAGCTTTCATTA TERM 2487 1899554 - 1899537 - R 88 -8.5 -4.85782 | opp_overlap 1899537 1899533 1899527, overlap 1899533 TTTCTCAAAAATAAA TAGGCAA TTAA TTGCCTA TTTATTTTAGCTTTC TERM 2488 1899537 - 1899554 + r 88 -8.5 -4.74598 | opp_overlap 1899533 1899537, overlap 1899533 1899527 TTTCTCAAAAATAAA TAGGCAA TTAA TTGCCTA TTTATTTTAGCTTTC hfq 1899794 - 1899561 - | RNA chaperone Hfq miaA 1900773 - 1899844 - | tRNA delta(2)-isopentenylpyrophosphate transferase TERM 2489 1900053 - 1900086 + g 80 -3.9 -5.69379 | CTTTATACCCGATTC CTTGCATAGACTGCA TACT TGAAGTATATCCAAG TTTTTTTAATTCTAT CLL_A1818 1902794 - 1900776 - | DNA mismatch repair protein MutL TERM 2490 1903004 - 1902955 - R 100 -11.1 -4.40605 | opp_overlap 1902955, overlap 1902962 ATTTATAAATACAAA TTAAAAACTCCTAGGTTATATTT CTGA AAATAACACCTAAGAGCTTTTAA TTACTTAATAAATCA TERM 2491 1902997 - 1902962 - R 83 -7 -5.08367 | opp_overlap 1902955, overlap 1902955 AATACAAATTAAAAA CTCCTAGGTTATATTT CTGA AAATAACACCTAAGAG CTTTTAATTACTTAA treR 1903744 - 1903031 - | trehalose operon repressor treC 1905439 - 1903781 - | alpha,alpha-phosphotrehalase treP 1906882 - 1905476 - | pts system, trehalose-specific iibc component TERM 2492 1906180 - 1906164 - G 74 -6.5 -4.49981 | opp_overlap 1906162 1906177, overlap 1906153 TATACTAGTACAAAA CCAGCTA AAA TAGCAGG TATAACTTGTGATTG TERM 2493 1906949 - 1906905 - R 82 -9 -4.07568 | gap 1, opp_overlap 1906905 CCCTCCCTCTTAAAA CATATACGTACATGTTAT-AT TTAA ATAATAACTTATACGTATATG TTTTGTCAATGTTTA TERM 2494 1906905 - 1906949 + r 75 -6.8 -4.48877 | gap 1, opp_overlap 1906905 CCCTCCCTCTTAAAA CATATACGTACATGTTAT-AT TTAA ATAATAACTTATACGTATATG TTTTGTCAATGTTTA TERM 2495 1906952 - 1906973 + r 76 -2.3 -5.93252 | overlap 1906953 TTATACGTATATGTT TTGTCAATG TTTA CATTGAAAG TTTTTTATTTTTAAA TERM 2496 1907158 - 1907114 - R 100 -12.4 -5.25803 | opp_overlap 1907116 AATTTTTATAAAAAA GAGTACTTAAATTCAACTGA TTATG CCAGAAGAATTTAAGTACTC TCATAATAAACTATT CLL_A1822 1907346 - 1907179 - | hypothetical protein mutS 1910199 - 1907371 - | DNA mismatch repair protein MutS TERM 2497 1910388 - 1910365 - R 78 -4.6 -5.56112 | opp_overlap 1910365 1910367 ATAAAAATTAAAAAA GCCTTCCA AAATAAAA TGGAAGAC TTTCTTTTAAATAAT CLL_A1824 1911417 - 1910395 - | spore photoproduct lyase TERM 2498 1911717 - 1911688 - R 100 -13.9 -4.90266 | opp_overlap 1911682 1911691 GTTACTAATTAAAAA TAACTGCTTATTT AATA AAATAAGCAGTTA TAGTGGTTAATTATT TERM 2499 1911691 - 1911714 + r 95 -11.2 -3.48342 | opp_overlap 1911688, overlap 1911682 ACTAATTAAAAATAA CTGCTTATTT AATA AAATAAGCAG TTATAGTGGTTAATT CLL_A1825 1912666 - 1911968 - | MgtC/SapB transporter CLL_A1826 1913528 - 1912797 - | glycerophosphoryl diester phosphodiesterase family protein TERM 2500 1913170 - 1913185 + g 70 -6.2 -4.13882 | ATTTTTTCTATATTT GCATAA TCAA TTATGC TGTTTTTAATTTCTA TERM 2501 1913744 - 1913768 + r 85 -5.9 -5.50925 | CTTACTATTAAATTT TAATTCAAATA AAA TGTTTGGATTA TTTTTTCTCTTGCTT CLL_A1827 1914493 - 1913795 - | MgtC/SapB transporter TERM 2502 1914635 - 1914600 - R 95 -12.8 -3.52874 | opp_overlap 1914625, overlap 1914598 TTTTATATAAGAAGA GAGACAATGTAACCAA AATT TTGACTACATTGCCTC AATAGACATTGTATG CLL_A1828 1918023 - 1914763 - | SWI/SNF family helicase TERM 2503 1915164 - 1915145 - G 70 -6.6 -3.98745 | opp_overlap 1915145 GAACCATCCAAATAA GAAAATAA TATG TTATTTTC TTTAAGTAAGTTACC CLL_A1829 1918232 - 1918044 - | hypothetical protein TERM 2504 1918098 - 1918118 + g 70 -8.5 -2.61983 | overlap 1918096 1918097 TTCTATATACTCAGA TTTAGAAAA TCC TTTTCTAAA ATATCTTATTTGCTT TERM 2505 1918180 - 1918196 + g 70 -5.9 -4.39724 | ACATCGATTCTATCA CCTTTAA ATA TTAGAGG TTCTTTCTTTCCTTT CLL_A1830 1920177 - 1918246 - | ABC transporter ATP-binding protein uup TERM 2506 1920408 - 1920381 - R 86 -5.7 -5.64006 | opp_overlap 1920375 1920397 ATTGAATGAAAAAAA CACCCAACATT TATATT AATGTTAGATG TTTTTATATTAAACA CLL_A1831 1920841 - 1920431 - | hypothetical protein TERM 2507 1920871 - 1920904 + H 100 -11.3 -4.50627 | opp_overlap 1920891 1920899 TTTCTTTTTTTATTT GCTATGTTTTAAAAT ATCA ATTATAAAACATAGC TTTGTTTCATAACTA TERM 2508 1920921 - 1920899 - H 71 -5.6 -4.57209 | opp_overlap 1920871, overlap 1920891 ATATCAATTATAAAA CATAGCTTTG TTT CATAACTATG ATACCTCATTATAAC TERM 2509 1921393 - 1921406 + G 83 -6.7 -4.81814 | opp_overlap 1921393, overlap 1921383 1921383 TTATTCCTATAGAAA CACTC TATA GAGTG TTTTATTCTGATAAT TERM 2510 1921406 - 1921393 - g 70 -6.7 -4.04206 | opp_overlap 1921383 1921383 1921393 TTATTCCTATAGAAA CACTC TATA GAGTG TTTTATTCTGATAAT TERM 2511 1922168 - 1922150 - g 89 -7.6 -5.11112 | opp_overlap 1922158, overlap 1922158 1922159 AAATTTCAAGAAAAA TTTAAAAG CTC CTTTTAAA GGAATACTTTCAAAA CLL_A1832 1921137 - 1922630 + | phytoene dehydrogenase family protein CLL_A1833 1922781 - 1923686 + | hypothetical protein TERM 2512 1924333 - 1924305 - g 81 -10.6 -2.56046 | opp_overlap 1924296, overlap 1924296 TCAAACTTCAAGGGA TTTTTCTTCTTT AGATG AAAGAAGAAAAA ACGCATTAGAATATG CLL_A1834 1923715 - 1924821 + | hypothetical protein TERM 2513 1924868 - 1924823 - T 100 -19.5 -3.79251 | opp_overlap 1924830 1924833, overlap 1924825 1924830 GAGTTCATTATTAAA TATAAAAGAATAGGCTATGTT ATAA AACATAGCCTATTCTTTTAAA TAACGTAATTTTCGT TERM 2514 1924866 - 1924825 - T 100 -22.1 -3.48024 | opp_overlap 1924830 1924833, overlap 1924823 1924830 GTTCATTATTAAATA TAAAAGAATAGGCTATGTT ATAA AACATAGCCTATTCTTTTA AATAACGTAATTTTC TERM 2515 1924830 - 1924861 + T 100 -17.6 -4.1899 | opp_overlap 1924825 1924823 1924830, overlap 1924833 TTATTAAATATAAAA GAATAGGCTATGTT ATAA AACATAGCCTATTC TTTTAAATAACGTAA TERM 2516 1924861 - 1924830 - T 100 -17.6 -4.82128 | opp_overlap 1924830 1924833, overlap 1924825 1924823 TTATTAAATATAAAA GAATAGGCTATGTT ATAA AACATAGCCTATTC TTTTAAATAACGTAA TERM 2517 1924833 - 1924858 + T 100 -13.5 -4.21812 | opp_overlap 1924830 1924825 1924823, overlap 1924830 TTAAATATAAAAGAA TAGGCTATGTT ATAA AACATAGCCTA TTCTTTTAAATAACG CLL_A1835 1925487 - 1924864 - | Mn/Fe superoxide dismutase TERM 2518 1925627 - 1925662 + r 100 -9.3 -4.93877 | opp_overlap 1925627, overlap 1925621 TAAGAATAATATAAA GTGTACTATACATTA TATTTT TAATATATAGTACAC TTTTCTTTAATAAAG TERM 2519 1925662 - 1925627 - R 100 -11.5 -4.39954 | opp_overlap 1925621 1925627 TAAGAATAATATAAA GTGTACTATACATTA TATTTT TAATATATAGTACAC TTTTCTTTAATAAAG TERM 2520 1925667 - 1925677 + r 87 -4 -6.28401 | ATATAGTACACTTTT CTTT AAT AAAG TTTTTTTATTTTTTC CLL_A1836 1926229 - 1925669 - | nudix domain protein CLL_A1837 1927131 - 1926244 - | metallo-beta-lactamase superfamily exported protein TERM 2521 1927495 - 1927523 + r 100 -14.9 -5.61881 | opp_overlap 1927495 ACTCAATAATAAAAA GATGATTCAAAAT TAA ATTTTGAATCATC TTTTTATTTTTAAGC TERM 2522 1927523 - 1927495 - R 100 -14.9 -5.30348 | opp_overlap 1927495 ACTCAATAATAAAAA GATGATTCAAAAT TAA ATTTTGAATCATC TTTTTATTTTTAAGC CLL_A1838 1929161 - 1927533 - | 2,3-cyclic-nucleotide 2'phosphodiesterase TERM 2523 1928145 - 1928169 + g 95 -10.9 -4.15841 | TTTTTCAGTATTTAG TCCAATAACTT CTT GAGTTATTGGA TTTGTAGTTTCATCA TERM 2524 1929293 - 1929315 + r 70 -3.6 -5.19879 | opp_overlap 1929309 TTATATTTTTCTATA TATTTACTTT GAT AAATTAAATA TTTTTATATTTAACA TERM 2525 1929392 - 1929423 + r 100 -13.4 -5.75478 | opp_overlap 1929394 AATATCAATTGTATA CATTTACTTTAAAT CGTA ATTTAAAGTAAATG TTTTTTTGTATCATT TERM 2526 1929421 - 1929394 - R 80 -10.2 -2.92157 | opp_overlap 1929392 TATCAATTGTATACA TTTACTTTAAAT CGTA ATTTAAAGTAAA TGTTTTTTTGTATCA CLL_A1839 1929626 - 1929489 - | hypothetical protein TERM 2527 1929735 - 1929692 - R 100 -9.8 -4.44915 | opp_overlap 1929695, overlap 1929693 1929695 CAATGATTTATAAAA GTATAGGACTATCTTCAAAG AATT CTTTTAAGATAGTCCTATTA TATCAAATTAAATGG TERM 2528 1929734 - 1929693 - R 100 -13.3 -3.26226 | opp_overlap 1929695, overlap 1929692 1929695 AATGATTTATAAAAG TATAGGACTATCTTCAAAG AATT CTTTTAAGATAGTCCTATT ATATCAAATTAAATG TERM 2529 1929732 - 1929695 - R 100 -15.9 -3.18788 | opp_overlap 1929695, overlap 1929693 1929692 TGATTTATAAAAGTA TAGGACTATCTTCAAAG AATT CTTTTAAGATAGTCCTA TTATATCAAATTAAA TERM 2530 1929695 - 1929732 + r 100 -15.9 -3.52192 | opp_overlap 1929693 1929692 1929695 TGATTTATAAAAGTA TAGGACTATCTTCAAAG AATT CTTTTAAGATAGTCCTA TTATATCAAATTAAA CLL_A1840 1930685 - 1929753 - | pyruvate formate-lyase-activating enzyme CLL_A1841 1933155 - 1930744 - | pyruvate formate-lyase TERM 2531 1931635 - 1931661 + g 73 -3.1 -5.38951 | ATTATCTGCTGCAAC CATATGGAATA CAAAA TATTCTATTTG TTTTTTATATGCATT TERM 2532 1931900 - 1931885 - G 71 -7.6 -3.57144 | overlap 1931899 TCTTCTATTGTTAAA CCTTGA TTAA TCAAGG TTGGAATAACCACTT CLL_A1842 1934115 - 1933399 - | transcriptional regulatory protein TERM 2533 1933873 - 1933883 + g 74 -2.6 -5.73978 | ATCATAAATACTCAT TAAT ACA ATTA TTTTTTCTTTATAAT CLL_A1843 1935508 - 1934297 - | two-component sensor histidine kinase CLL_A1844 1936570 - 1935734 - | oxidoreductase, aldo/keto reductase family TERM 2534 1935766 - 1935780 + g 73 -8.6 -2.97392 | opp_overlap 1935762, overlap 1935763 1935760 1935768 AATAAATACTATCTG GATGTG ATC CACATC TAATGTTTTCATCTA TERM 2535 1935794 - 1935804 + g 74 -2.6 -5.62219 | TCTAATGTTTTCATC TAAT TTA ATTA TTTTTTTCATATCTT TERM 2536 1936705 - 1936743 + r 100 -10.6 -5.21236 | opp_overlap 1936708 TAAATATTGTTTTAT TAACTTACAGATAATATT AAA ATTATAATCTGTAAGTTA TTTTTCTTATAAATT CLL_A1845 1938134 - 1936791 - | V-type sodium ATP synthase subunit J TERM 2537 1937244 - 1937232 - G 72 -6.3 -4.26202 | AGATCCACCAATAAA CATCA GTA TGATG GTAAAAAACTTACTT TERM 2538 1938220 - 1938273 + r 100 -15.1 -2.61306 | opp_overlap 1938208 1938221, overlap 1938218 1938226 1938231 1938263 1938269 TATTATTTAACATAA ATATAACGCTATTTTACTATAAAAT TTGA ACTTTGTAGTAAAATAGCGTTATAA ATGTTATACTTCTAT TERM 2539 1938272 - 1938221 - R 100 -18.6 -4.22009 | opp_overlap 1938220 1938218 1938226 1938231 1938263 1938269, overlap 1938208 ATTATTTAACATAAA TATAACGCTATTTTACTATAAAAT TTGA ACTTTGTAGTAAAATAGCGTTATA AATGTTATACTTCTA TERM 2540 1938226 - 1938267 + r 100 -14.1 -3.43961 | opp_overlap 1938221, overlap 1938220 1938218 1938231 1938263 TTAACATAAATATAA CGCTATTTTACTATAAAAT TTGA ACTTTGTAGTAAAATAGCG TTATAAATGTTATAC CLL_A1846 1940131 - 1938350 - | oligoendopeptidase F CLL_A1847 1940584 - 1940973 + | iron-binding protein, hemerythrin TERM 2541 1940978 - 1941015 + T 100 -10.3 -5.74086 | opp_overlap 1940978 TAGGAAAATAAAAAA TAATACTATAAAGAT AATTAAAA ATCTTTATAGTATTA TTTTTTATTTACTTT TERM 2542 1941015 - 1940978 - T 100 -10.3 -5.83211 | opp_overlap 1940978 TAGGAAAATAAAAAA TAATACTATAAAGAT AATTAAAA ATCTTTATAGTATTA TTTTTTATTTACTTT TERM 2543 1941120 - 1941143 + T 73 -7.6 -3.78234 | gap 1, opp_overlap 1941107, overlap 1941136 TACTTAGTGCTTCAC TAGCTGCAACA CTT TGTT-CAGCTA TTGTTGAATTTCACT CLL_A1848 1942111 - 1941302 - | Sel1 repeat family TERM 2544 1941450 - 1941478 + g 70 -3.2 -5.33785 | opp_overlap 1941436 1941449 1941447, overlap 1941447 1941451 GTTGCTAAATTATAT TCAGCATATGAA TATTC TTGATATGCTGC TTTTTTATAATACTT TERM 2545 1941984 - 1941994 + g 81 -3.2 -5.8901 | overlap 1941980 TATTTATCACCCAAA GCAT TTT GTGC TTTTTTATTTTCTCT CLL_A1849 1942343 - 1942921 + | hypothetical protein TERM 2546 1942964 - 1942936 - T 70 -2.6 -5.63012 | gap 1, opp_overlap 1942924 1942936 AAAAAGAAATAAAAA TACAAGAA-GTAC ACAT GTATGTTCTTGTA TTTTTATTCTAATTT TERM 2547 1942936 - 1942964 + T 74 -4.8 -5.25772 | gap 1, opp_overlap 1942936, overlap 1942924 AAAAAGAAATAAAAA TACAAGAA-GTAC ACAT GTATGTTCTTGTA TTTTTATTCTAATTT CLL_A1850 1943937 - 1942981 - | hypothetical protein TERM 2548 1944002 - 1944055 + r 89 -12.5 -2.90496 | gap 1, opp_overlap 1944002 1944009, overlap 1944004 1944009 TCAACTATGCATAAA TATTAAAGTGAAATTATATTA-TA CTTAATT TACTAATATAATTTCACTTTAATA TAGTTTACAAAAAGA TERM 2549 1944055 - 1944002 - R 100 -12.5 -3.95153 | gap 1, opp_overlap 1944002 1944004 1944009, overlap 1944009 TCAACTATGCATAAA TATTAAAGTGAAATTATATTA-TA CTTAATT TACTAATATAATTTCACTTTAATA TAGTTTACAAAAAGA TERM 2550 1944004 - 1944053 + r 85 -10.7 -3.00525 | gap 1, opp_overlap 1944002 1944009, overlap 1944002 1944009 AACTATGCATAAATA TTAAAGTGAAATTATATTA-TA CTTAATT TACTAATATAATTTCACTTTAA TATAGTTTACAAAAA CLL_A1851 1945871 - 1944108 - | two-component sensor histidine kinase TERM 2551 1944411 - 1944426 + g 79 -4.8 -5.51046 | TATTCCATTATCTTT TATACT AATA AGTATA TTTTTTCTATCTTTA CLL_A1852 1948199 - 1946205 - | sensory transduction histidine kinase TERM 2552 1947598 - 1947610 + g 70 -4.9 -4.77698 | opp_overlap 1947598 AATTTGTCTAATTCA GTATT ATT AATAC TTTCTTTTGATATTG CLL_A1853 1948586 - 1948948 + | hypothetical protein TERM 2553 1948999 - 1948966 - T 100 -17.1 -5.31275 | opp_overlap 1948966 TTTTATCATAAAAAA TGTGCTATAAACTAA GTTA TTAGTTTATAGCACA TTTTTATATTCTTAT TERM 2554 1948966 - 1948999 + T 100 -17.1 -5.21506 | opp_overlap 1948966 TTTTATCATAAAAAA TGTGCTATAAACTAA GTTA TTAGTTTATAGCACA TTTTTATATTCTTAT CLL_A1854 1950423 - 1949011 - | amino acid permease family protein TERM 2555 1950041 - 1950059 + g 70 -6 -4.44211 | opp_overlap 1950040 ATTATTTGCATAATT TTAGGGCT CAT AGCACTAA TTCTTTTATCTTGAA TERM 2556 1950382 - 1950398 + g 73 -8.1 -3.46525 | opp_overlap 1950380 1950379, overlap 1950380 1950375 GAATGCCATAAATGC TAATGTG TAC CACATTA TCTGTTTATCTTTAT CLL_A1855 1950855 - 1952855 + | methyl-accepting chemotaxis protein TERM 2557 1952859 - 1952904 + T 100 -12.3 -4.46254 | opp_overlap 1952848 1952866 AAGATTAAATAAGGT TATTTAAGAACATACTCTAAA TAGA TTAATAGTATGTTCTTAAATA TTTATTATATCTTAC CLL_A1856 1953244 - 1952927 - | pyrophosphohydrolase MazG RS21-C6 family protein contains InterPro domain TERM 2558 1953276 - 1953292 + r 70 -3.8 -5.17054 | ATCTTTGTTTTTAAT TACAAT TTAAT ATTGTA TTTTTTCAATATTCT CLL_A1857 1954248 - 1953493 - | MerR-family transcriptional regulator TERM 2559 1954351 - 1954371 + r 70 -2.7 -5.60993 | opp_overlap 1954351 TCCTTCCCATTAAAC TTAATAATT ATG AATTTTTAA TTTTTTTGTAGAACA TERM 2560 1954428 - 1954385 - R 95 -12.8 -3.29043 | opp_overlap 1954385 1954390 1954425, overlap 1954390 AATTTTTTTGTAGAA CAAAAGAGCCATATATTAGA ATAC TCTAAGATATAGCTCTTTTA TAAATTATATAAATA TERM 2561 1954390 - 1954423 + r 82 -8.3 -4.49939 | opp_overlap 1954390 1954385, overlap 1954385 TTTTGTAGAACAAAA GAGCCATATATTAGA ATAC TCTAAGATATAGCTC TTTTATAAATTATAT TERM 2562 1954423 - 1954390 - R 100 -10.5 -4.77165 | opp_overlap 1954385 1954390, overlap 1954385 TTTTGTAGAACAAAA GAGCCATATATTAGA ATAC TCTAAGATATAGCTC TTTTATAAATTATAT CLL_A1858 1956913 - 1954433 - | FAD-dependent pyridine nucleotide-disulphide oxidoreductase TERM 2563 1956540 - 1956553 + g 72 -6.7 -4.09739 | opp_overlap 1956539, overlap 1956532 TCACATTTATCAATT CCTGA TATT TCAGG TTTTAAAGGACTTGC TERM 2564 1957440 - 1957430 - g 80 -4 -5.69023 | AAAAGATGAAAAAAA TACT AAT AGTA GAAGATGATATTATC CLL_A1859 1957420 - 1958109 + | regulatory protein VanR CLL_A1860 1958210 - 1959127 + | two-component sensor histidine kinase fliL 1959345 - 1959800 + | flagellar basal body-associated protein FliL CLL_A1862 1959830 - 1960495 + | macrolide export ATP-binding/permease protein MacB TERM 2565 1960845 - 1960820 - g 100 -12.1 -4.2558 | opp_overlap 1960824 1960826, overlap 1960807 CATCCTTTAGTAAAA GATATAGGTAT TTCT ATACCTATATC TAAAATTACAAATAA TERM 2566 1961231 - 1961217 - g 86 -4.4 -5.80364 | ATGTTAACAAAAAAA TTAATA GAA TATTAA AGGATTGTAATATAG TERM 2567 1961491 - 1961506 + G 77 -6.2 -4.79756 | opp_overlap 1961487 TCTTTCAATTATAGG TATACC CATA GGTATA TTTTTAGGTTATATA TERM 2568 1962791 - 1962779 - g 70 -4.9 -4.7254 | ATTTCTTATGAAAAA GAATT TGC AATTC TTGAAAGTATAGGAA TERM 2569 1962842 - 1962818 - g 72 -3.7 -5.2189 | GGAATGACCAAAAAA CAAATATTAAA ACT TTTAACATATG AGGGATTATACTATG CLL_A1863 1960592 - 1963078 + | efflux ABC transporter, permease protein TERM 2570 1963082 - 1963119 + T 82 -4.3 -5.69793 | opp_overlap 1963089, overlap 1963084 1963089 GAAAATTTTTAATAA CAAAAAACCTTGTAATT CTAA AACTACAAGGTTTTATA TTTTTTATTTAATAT TERM 2571 1963084 - 1963117 + T 75 -6.9 -4.47052 | opp_overlap 1963089, overlap 1963082 1963089 AAATTTTTAATAACA AAAAACCTTGTAATT CTAA AACTACAAGGTTTTA TATTTTTTATTTAAT TERM 2572 1963112 - 1963089 - T 100 -9 -5.64873 | opp_overlap 1963089 1963084 1963082 TTTAATAACAAAAAA CCTTGTAATT CTAA AACTACAAGG TTTTATATTTTTTAT TERM 2573 1963089 - 1963112 + T 80 -6.8 -5.08086 | opp_overlap 1963089, overlap 1963084 1963082 TTTAATAACAAAAAA CCTTGTAATT CTAA AACTACAAGG TTTTATATTTTTTAT CLL_A1864 1964767 - 1963124 - | sensory box histidine kinase TERM 2574 1965047 - 1965025 - R 89 -4.2 -6.12458 | opp_overlap 1965018 TAAAAAAATAAAAAA GTACTCTATA TCT TATTGAATAC TTTTTCATTAAATAA CLL_A1865 1966415 - 1965078 - | alkaline phosphatase synthesis sensor protein PhoR CLL_A1866 1967145 - 1966462 - | transcriptional regulatory protein ResD mgtE 1968520 - 1967186 - | magnesium transporter TERM 2575 1967906 - 1967927 + g 71 -4.6 -4.93318 | TTTTTCTTGATCTTC TATAGTTT TAGTAT AAACTATA TTTTTATCCATTATA TERM 2576 1968789 - 1968741 - R 100 -12.1 -5.04597 | opp_overlap 1968740 1968741 1968743 1968760, overlap 1968744 ATGGAGATATAAAAA TAACTACCTATAAAACGACCTTA AAT TAAGTTCATTTTATAGATAGATA CTTATACTATTATAC TERM 2577 1968786 - 1968744 - R 100 -13.8 -4.61353 | opp_overlap 1968743 1968741 1968740 1968760, overlap 1968741 GAGATATAAAAATAA CTACCTATAAAACGACCTTA AAT TAAGTTCATTTTATAGATAG ATACTTATACTATTA TERM 2578 1968893 - 1968874 - R 78 -6.4 -4.91046 | TATAAAATAAATAAA GCCATGGA TATC TCCACAGC TAAAAAATCAGCATT TERM 2579 1969105 - 1969147 + r 95 -11.1 -3.61097 | opp_overlap 1969111 1969118, overlap 1969104 1969106 1969108 AATTTATATATTTTC ATATTATTTTAAAGTTTAT CAATA ATAAACTTTAAAATAATAA TCTTTAATTCTATCC TERM 2580 1969106 - 1969146 + r 100 -14.6 -2.75935 | opp_overlap 1969111 1969118, overlap 1969105 1969104 1969108 ATTTATATATTTTCA TATTATTTTAAAGTTTAT CAATA ATAAACTTTAAAATAATA ATCTTTAATTCTATC TERM 2581 1969108 - 1969144 + r 91 -12.8 -2.9127 | opp_overlap 1969111 1969118, overlap 1969106 1969105 1969104 TTATATATTTTCATA TTATTTTAAAGTTTAT CAATA ATAAACTTTAAAATAA TAATCTTTAATTCTA TERM 2582 1969141 - 1969111 - R 81 -10.8 -2.63301 | opp_overlap 1969108 1969106 1969105 1969104, overlap 1969118 TATATTTTCATATTA TTTTAAAGTTTATC AAT AATAAACTTTAAAA TAATAATCTTTAATT CLL_A1868 1969815 - 1969162 - | HAD-superfamily hydrolase subfamily IA, variant 3 TERM 2583 1969929 - 1969940 + r 73 -4.4 -5.16133 | CAAGCACTATTAATT GCTA ATTT TAGC TTTTTATCTTATGAT TERM 2584 1969997 - 1970023 + r 100 -11.2 -4.43307 | opp_overlap 1970006, overlap 1969994 1970000 1970006 ATATTATACTCATTC GTATTAAAATAA GAA TTATTTTAATAC TTATTTTATTAAAAC TERM 2585 1970046 - 1970006 - R 75 -7.3 -4.26076 | opp_overlap 1969997 1969994 1970006 1970000 TCATTCGTATTAAAA TAAGAATTATTTTAATA CTTATTT TATTAAAACAATCCTTA TTTTTAATTATTACA hcp 1971766 - 1970108 - | hydroxylamine reductase TERM 2586 1971854 - 1971885 + r 100 -16.2 -4.92239 | opp_overlap 1971854 TATTCTATAAAAAAA CCTCAATAATACTT AAAT AAGTATTATTGAGG TTTTTAAATTTTTAC TERM 2587 1971885 - 1971854 - R 100 -16.2 -5.626 | opp_overlap 1971854 TATTCTATAAAAAAA CCTCAATAATACTT AAAT AAGTATTATTGAGG TTTTTAAATTTTTAC CLL_A1870 1972670 - 1971936 - | putative TPR repeat-containing protein CLL_A1871 1972808 - 1973302 + | hypothetical protein TERM 2588 1973372 - 1973326 - T 75 -5.4 -5.0065 | opp_overlap 1973338 1973369, overlap 1973335 1973338 CAGGCATAAATAAAA TCATACAAAGAATGGATTCAAA TTA TTTGAATCCATTTGTTATTTAA AACTTAATTAATATT TERM 2589 1973363 - 1973335 - T 95 -10.5 -4.21701 | opp_overlap 1973338, overlap 1973326 1973338 ATAAAATCATACAAA GAATGGATTCAAA TTA TTTGAATCCATTT GTTATTTAAAACTTA TERM 2590 1973338 - 1973360 + T 100 -12.2 -4.56978 | opp_overlap 1973335 1973326 1973338 AAATCATACAAAGAA TGGATTCAAA TTA TTTGAATCCA TTTGTTATTTAAAAC TERM 2591 1973360 - 1973338 - T 100 -12.2 -4.19324 | opp_overlap 1973338, overlap 1973335 1973326 AAATCATACAAAGAA TGGATTCAAA TTA TTTGAATCCA TTTGTTATTTAAAAC TERM 2592 1973406 - 1973416 + T 72 -4 -5.3671 | AAATAATTTCTTTAT TCTA ATT TAGA TTTTTTACTTCTATT CLL_A1872 1973871 - 1973407 - | hypothetical protein TERM 2593 1974003 - 1974041 + r 70 -7.8 -3.31792 | opp_overlap 1974003 1974040 CACTTTTATGGAAAA TATTGATATATTTTGATT TCA AACAAAAATATATCAATA TTATAAAGATAATAA TERM 2594 1974041 - 1974003 - R 93 -10 -4.18494 | opp_overlap 1974003, overlap 1974040 CACTTTTATGGAAAA TATTGATATATTTTGATT TCA AACAAAAATATATCAATA TTATAAAGATAATAA CLL_A1873 1975298 - 1974108 - | hypothetical protein CLL_A1874 1976826 - 1975618 - | acetyltransferase CLL_A1875 1978291 - 1977053 - | major facilitator superfamily MFS_1 CLL_A1876 1978465 - 1979364 + | transcriptional regulator, LysR family TERM 2595 1979421 - 1979385 - T 78 -8.1 -3.92373 | opp_overlap 1979391, overlap 1979387 1979388 TATTCTATTTAGAAA TATTCAGTCCAACCTAA AAT TTAGGTTGGACTTATTT AAATACATCTCATGT TERM 2596 1979419 - 1979387 - T 91 -10.7 -3.5511 | opp_overlap 1979391, overlap 1979385 1979388 TTCTATTTAGAAATA TTCAGTCCAACCTAA AAT TTAGGTTGGACTTAT TTAAATACATCTCAT TERM 2597 1979418 - 1979388 - T 100 -14.2 -2.72745 | opp_overlap 1979391, overlap 1979387 1979385 TCTATTTAGAAATAT TCAGTCCAACCTAA AAT TTAGGTTGGACTTA TTTAAATACATCTCA TERM 2598 1979391 - 1979415 + T 100 -15.9 -3.9693 | opp_overlap 1979388 1979387 1979385 ATTTAGAAATATTCA GTCCAACCTAA AAT TTAGGTTGGAC TTATTTAAATACATC TERM 2599 1979684 - 1979654 - T 100 -8.5 -5.63517 | opp_overlap 1979654 CCGTCAAATAAAAAA GCTAAGATTATAT TTTAG ATTTAATCTTAGC TTTCATAAAATATTT TERM 2600 1979654 - 1979684 + T 84 -9.2 -3.76781 | opp_overlap 1979654 CCGTCAAATAAAAAA GCTAAGATTATATT TTA GATTTAATCTTAGC TTTCATAAAATATTT CLL_A1877 1979896 - 1979705 - | hypothetical protein TERM 2601 1980153 - 1980143 - H 70 -2.6 -5.52384 | TTTGTAGTAAAAAAA TTTT ATT AAAA TGAATATATATAAAT TERM 2602 1980605 - 1980588 - g 72 -7.1 -4.06527 | opp_overlap 1980591, overlap 1980591 AAAAGGAAAACACAA GAATTAC TTCT GTAATTC CTAAAAAAGTATATG CLL_A1878 1980566 - 1980718 + | hypothetical protein TERM 2603 1980908 - 1980921 + G 71 -2.5 -5.4505 | TTAAATTAAATCCTG TAAAA GTAT TTTTA TTTTTTGTTGAGCAC CLL_A1879 1980742 - 1980957 + | transcriptional regulator, Cro/CI family CLL_A1880 1981072 - 1981206 + | hypothetical protein TERM 2604 1981205 - 1981195 - T 70 -2.6 -5.5604 | opp_overlap 1981195 GCAATTAATAAAAAA TATT CTG AATA ATTATCTAATATAAA CLL_A1881 1981680 - 1981453 - | hypothetical protein TERM 2605 1981786 - 1981815 + G 90 -11.1 -3.65109 | opp_overlap 1981793, overlap 1981781 1981793 1981811 ATAATTTCTATTATT TAGTAAATAAAAA ATTT TTTTTATTTACTA TTAGTATTTTTATAT CLL_A1882 1981755 - 1982738 + | putative lipoprotein TERM 2606 1983557 - 1983506 - g 71 -4.3 -4.86293 | gap 2, opp_overlap 1983513 1983516, overlap 1983517 CAATAAAAATGAAAA TACAATATAAAGATTCTAAATATTC TTTT AAATATTTAGAATCA-TA-ATTGTA TATTCTAGCAGTGTA TERM 2607 1983548 - 1983517 - g 95 -11.2 -4.3821 | opp_overlap 1983516 1983513, overlap 1983506 AAAATACAATATAAA GATTCTAAATATTC TTTT AAATATTTAGAATC ATAATTGTATATTCT CLL_A1883 1982773 - 1983552 + | hypothetical protein TERM 2608 1983626 - 1983594 - T 100 -11.5 -5.30616 | opp_overlap 1983598, overlap 1983598 TTAGTTAAATAAAAA TAAAGCAGTAAGTAA TTT TTACCTACTGCTTTT TTATTAATTACATTT TERM 2609 1983598 - 1983622 + T 100 -10.1 -5.5604 | opp_overlap 1983594 1983598 TTAAATAAAAATAAA GCAGTAAGTAA TTT TTACCTACTGC TTTTTTATTAATTAC TERM 2610 1983622 - 1983598 - T 100 -12.3 -5.12987 | opp_overlap 1983598, overlap 1983594 TTAAATAAAAATAAA GCAGTAAGTAA TTT TTACCTACTGC TTTTTTATTAATTAC CLL_A1884 1984706 - 1983630 - | metallo beta-lactamase family protein CLL_A1885 1984976 - 1984734 - | hypothetical protein CLL_A1886 1985838 - 1985035 - | surface protein A TERM 2611 1985947 - 1985915 - R 80 -6.5 -4.96773 | gap 1, opp_overlap 1985915 TTAACTAAAAACAAA GCAGTAAGTAA-GA TTAATT TCTTTACCTACTGC TTTTATTAATGCATA TERM 2612 1986107 - 1986069 - R 72 -4.8 -4.9792 | gap 1, opp_overlap 1986070 1986072, overlap 1986072 TATCGCATATAAAAA TAAGGGTAGTATATAGA TTAAAT TCTACATACTGCCC-TA TTTTTTACTTATATT TERM 2613 1986070 - 1986107 + r 87 -6.4 -5.3671 | opp_overlap 1986069 1986072, overlap 1986072 ATCGCATATAAAAAT AAGGGTAGTATATAGA TTAAAT TCTACATACTGCCCTA TTTTTTACTTATATT TERM 2614 1986105 - 1986072 - R 89 -9 -4.58943 | opp_overlap 1986070 1986072, overlap 1986069 CGCATATAAAAATAA GGGTAGTATATAGA TTAAAT TCTACATACTGCCC TATTTTTTACTTATA TERM 2615 1986072 - 1986105 + r 84 -9 -4.29187 | opp_overlap 1986072 1986069, overlap 1986070 CGCATATAAAAATAA GGGTAGTATATAGA TTAAAT TCTACATACTGCCC TATTTTTTACTTATA CLL_A1887 1986541 - 1986158 - | hypothetical protein TERM 2616 1986440 - 1986414 - G 74 -8.8 -3.18849 | opp_overlap 1986414 1986412 1986415 1986417, overlap 1986412 1986415 GTTACACCACTAATA CGATGATTGTGT TCT ACACACTCATCA TCTTTTGCATAACTT TERM 2617 1986415 - 1986439 + g 80 -10.1 -2.81476 | opp_overlap 1986414 1986412 1986415, overlap 1986414 1986412 1986417 TTACACCACTAATAC GATGATTGTGT TCT ACACACTCATC ATCTTTTGCATAACT TERM 2618 1986439 - 1986415 - G 78 -10.1 -2.50988 | opp_overlap 1986415 1986414 1986412 1986417, overlap 1986414 1986412 TTACACCACTAATAC GATGATTGTGT TCT ACACACTCATC ATCTTTTGCATAACT TERM 2619 1986913 - 1986873 - R 93 -7.8 -5.16133 | gap 1, opp_overlap 1986877, overlap 1986877 ATTATAATATAAAAA GAAAGGGTAGCAAATAATA TTTC TCCTATCTGCTACCC-TTC GTTTTCTAATTTTAT TERM 2620 1986910 - 1986877 - R 100 -9.7 -5.05037 | opp_overlap 1986877, overlap 1986873 TAATATAAAAAGAAA GGGTAGCAAATAATA TTTC TCCTATCTGCTACCC TTCGTTTTCTAATTT CLL_A1888 1987876 - 1987085 - | collagenolytic protease TERM 2621 1987927 - 1987909 - R 87 -6 -5.7827 | opp_overlap 1987909 AATATAAAGAAAAAA GGTAGC TAAAAAC GCTACC TAAATTACTCTTTAA CLL_A1889 1988105 - 1987932 - | hypothetical protein CLL_A1890 1988318 - 1988118 - | UviB homologous protein TERM 2622 1988371 - 1988354 - R 90 -6.3 -5.88565 | opp_overlap 1988354 TTTATAACAAAAAAA CACCTAC TTTC GTAAGTG TTTCTTATTTACTAA CLL_A1891 1989168 - 1988383 - | cell adhesion domain-containing protein TERM 2623 1989370 - 1989348 - R 87 -6.3 -5.73978 | opp_overlap 1989348 ATGATAAAGAAAAAA GAGTGTAGC ATTAA ACTACACCC TACCTTGGACAATTT CLL_A1892 1989947 - 1989393 - | hypothetical protein CLL_A1893 1990238 - 1990029 - | hypothetical protein CLL_A1894 1990531 - 1990334 - | hypothetical protein CLL_A1895 1990882 - 1990544 - | hypothetical protein CLL_A1896 1992291 - 1990900 - | putative tail fiber protein TERM 2624 1991708 - 1991696 - G 77 -6.3 -4.70887 | opp_overlap 1991696 1991695 GTATTAACAAACAAA GTACA TCT TGTAC CTTTGCTTAGTTTAG TERM 2625 1992075 - 1992085 + g 73 -5.4 -4.71828 | TAACTTCTATGTGAA TCCA GTT TGGA TTTTCTTCATCAACT CLL_A1897 1992908 - 1992291 - | hypothetical protein CLL_A1898 1993965 - 1992898 - | putative conserved hypothetical protein CLL_A1899 1994432 - 1993977 - | hypothetical protein CLL_A1900 1994785 - 1994432 - | hypothetical protein TERM 2626 1994777 - 1994762 - G 70 -6.2 -4.13728 | overlap 1994771 TATAGAGTTCCAAAA TTCATC AAAT GATGAA GACATCATATCACCT CLL_A1901 1996254 - 1994797 - | NlpC/P60 family protein TERM 2627 1995026 - 1995044 + g 70 -3.1 -5.3671 | opp_overlap 1995030 AAAATTACATGAGAT TGAATGC CAACA GCACTCA TTTTTTGCTTATATT CLL_A1902 1997024 - 1996254 - | hypothetical protein CLL_A1903 1997752 - 1997033 - | hypothetical protein CLL_A1904 1999656 - 1997761 - | hypothetical protein CLL_A1905 1999849 - 1999670 - | hypothetical protein CLL_A1906 2000337 - 1999891 - | hypothetical protein CLL_A1907 2000847 - 2000389 - | hypothetical protein CLL_A1908 2001942 - 2000863 - | XkdK protein TERM 2628 2001108 - 2001119 + g 73 -3 -5.38398 | AATAAGAGTTCAGCT CATT TATC AATG TTTTTCTATTTTTAT TERM 2629 2001997 - 2001980 - R 72 -6.3 -4.5448 | opp_overlap 2001980, overlap 2001977 TATGCATAAAAATAA GACCAGT TATA ACTAGTC TTTAATCAATAATAT CLL_A1909 2002436 - 2001999 - | hypothetical protein CLL_A1910 2002849 - 2002445 - | hypothetical protein CLL_A1911 2003186 - 2002842 - | hypothetical protein TERM 2630 2002928 - 2002904 - G 83 -7.9 -4.67982 | TTTCACTTAATAAAA CCTCGAGATAA TCA TCATCCCAAGG TATTGCTTCAATTTT CLL_A1912 2003476 - 2003189 - | hypothetical protein CLL_A1913 2004426 - 2003491 - | prophage protein CLL_A1914 2005062 - 2004463 - | hypothetical protein TERM 2631 2004803 - 2004816 + g 76 -3.8 -5.46129 | overlap 2004800 TTCTTTTTATTAGTT GCAG CATCAA CTGC TTTTTTAATTTCTTC CLL_A1915 2005468 - 2005160 - | hypothetical protein CLL_A1916 2005674 - 2005501 - | hypothetical protein CLL_A1917 2005955 - 2005734 - | putative Guanosine polyphosphate pyrophosphohydrolase/synthetase homolog CLL_A1918 2006194 - 2005991 - | hypothetical protein CLL_A1919 2007130 - 2006249 - | hypothetical protein CLL_A1920 2008484 - 2007120 - | hypothetical protein CLL_A1921 2010224 - 2008500 - | hypothetical protein CLL_A1922 2010453 - 2010262 - | hypothetical protein TERM 2632 2010519 - 2010497 - R 85 -8.5 -4.7173 | TATTACATTTAAAAA GCACCTAGA TAAAC TCTAAGTGC TAATAATTATTTACT CLL_A1923 2011173 - 2010526 - | resolvase/recombinase CLL_A1924 2011840 - 2011403 - | hypothetical protein CLL_A1925 2012668 - 2011988 - | hypothetical protein CLL_A1926 2012842 - 2012672 - | hypothetical protein TERM 2633 2012899 - 2012880 - R 70 -3.6 -5.15634 | TATTGCATTAAAAAA GAACCCTA TTTC TAGAATTC TAAAGCATACTTAAC CLL_A1927 2013588 - 2012899 - | hypothetical protein TERM 2634 2013805 - 2013776 - R 93 -7.9 -5.24416 | TAAGCATAACAAAAA TACCCCATACAAC CTAA GTAGTACAGGGTA TTGAGAATTTATGAG TERM 2635 2013974 - 2013993 + r 84 -5 -5.69793 | overlap 2013977 TTAATTTGCGTTCAA GTGGTAAC TTAG GTTACTGC TTTTTTATTTACTAT TERM 2636 2014051 - 2014061 + r 70 -2.6 -5.56372 | TATATATTTGTATTT TAAT AAT ATTA TTTTTCTTTTAATTT CLL_A1928 2014946 - 2014059 - | hypothetical protein TERM 2637 2014303 - 2014313 + g 76 -4 -5.48303 | GTATTTTCCCATCTT TCTA TTT TAGA TTTTTTTAAGATTGT CLL_A1929 2015612 - 2015088 - | hypothetical protein CLL_A1930 2015786 - 2015637 - | hypothetical protein CLL_A1931 2016101 - 2015790 - | hypothetical protein CLL_A1932 2016391 - 2016191 - | hypothetical protein CLL_A1933 2016808 - 2016401 - | single-strand binding protein family CLL_A1934 2017292 - 2016801 - | hypothetical protein CLL_A1935 2018050 - 2017337 - | hypothetical protein CLL_A1936 2018265 - 2018119 - | hypothetical protein CLL_A1937 2018558 - 2018370 - | hypothetical protein CLL_A1938 2018863 - 2018588 - | hypothetical protein CLL_A1939 2019042 - 2018893 - | hypothetical protein CLL_A1940 2019792 - 2019043 - | hypothetical protein CLL_A1941 2020706 - 2019801 - | hypothetical protein TERM 2638 2019946 - 2019965 + g 71 -8 -3.30554 | TTTGATGGTTGTTTA GTATCTAT TGGA ATAGATAC TTCCTGCTTAATTGG CLL_A1942 2021373 - 2020720 - | putative phage essential recombination function protein CLL_A1943 2021577 - 2021386 - | hypothetical protein CLL_A1944 2022500 - 2021580 - | hypothetical protein TERM 2639 2022361 - 2022345 - G 70 -5.1 -4.7497 | overlap 2022347 GTTATTCATTAAAAA CTCAAGA TCT TCTTGTG TCCATCTTTTATATT CLL_A1945 2022654 - 2022490 - | hypothetical protein CLL_A1946 2023052 - 2022798 - | hypothetical protein CLL_A1948 2023124 - 2023681 + | hypothetical protein TERM 2640 2023689 - 2023679 - T 70 -2.6 -5.53991 | CATCCATTAAAAAAA TAAT CCT ATTA TTCCAAAAGCTATTC CLL_A1947 2024026 - 2023670 - | hypothetical protein CLL_A1949 2024877 - 2024098 - | hypothetical protein TERM 2641 2024631 - 2024651 + g 79 -6.9 -4.72846 | opp_overlap 2024631 2024634, overlap 2024634 ATCCCATTTCTAAAA CAAGTCTTT TTG AAAGACCTG TTTTTAAATCTATAA TERM 2642 2024651 - 2024631 - G 86 -9.1 -4.11394 | opp_overlap 2024631 2024634, overlap 2024634 ATCCCATTTCTAAAA CAAGTCTTT TTG AAAGACCTG TTTTTAAATCTATAA TERM 2643 2024648 - 2024634 - G 75 -7.2 -4.18506 | opp_overlap 2024634 2024631, overlap 2024631 CCATTTCTAAAACAA GTCTTT TTG AAAGAC CTGTTTTTAAATCTA CLL_A1950 2025274 - 2024990 - | hypothetical protein TERM 2644 2025288 - 2025304 + r 72 -3.7 -5.27938 | ATTTCCCTCTCCTTT TTACTCT ATA AGCGTAA TTTTTATTTAAAAAT CLL_A1951 2025511 - 2025308 - | hypothetical protein TERM 2645 2025661 - 2025700 + H 100 -12.4 -4.55673 | overlap 2025663 TAAGGATTTTCTCCA TTTTACGCTAAAAGTGAA CTTT TACACTTTTAGCGTAATA TTTTATAATGTATTT TERM 2646 2025663 - 2025698 + H 100 -15 -3.86973 | overlap 2025661 AGGATTTTCTCCATT TTACGCTAAAAGTGAA CTTT TACACTTTTAGCGTAA TATTTTATAATGTAT CLL_A1952 2025738 - 2026094 + | transcriptional regulator, MerR family CLL_A1953 2026229 - 2027305 + | site-specific recombinase, phage integrase family CLL_A1954 2028557 - 2027919 - | hypothetical protein TERM 2647 2028692 - 2028702 + r 75 -4 -5.5074 | ATGTTTTACTGTATT TGTA TTA TACA TTTTTTATTCAATTA TERM 2648 2028830 - 2028796 - R 95 -11 -3.83205 | opp_overlap 2028803, overlap 2028782 2028803 ATCTCTTATATTAAA TAAAAAAGAGCAAC TTTTATG GTTGCTCTTCTTTA AAATATATTATATCT TERM 2649 2028823 - 2028803 - R 90 -6.9 -5.69793 | opp_overlap 2028803, overlap 2028782 2028796 ATATTAAATAAAAAA GAGCAAC TTTTATG GTTGCTC TTCTTTAAAATATAT TERM 2650 2028803 - 2028823 + r 75 -7.6 -3.9578 | opp_overlap 2028782 2028803 2028796 ATATTAAATAAAAAA GAGCAACT TTTAT GGTTGCTC TTCTTTAAAATATAT CLL_A1955 2029179 - 2028961 - | putative transcriptional regulator CLL_A1956 2029620 - 2029994 + | hypothetical protein CLL_A1957 2030979 - 2030245 - | hypothetical protein TERM 2651 2031157 - 2031126 - R 100 -9.8 -5.19879 | gap 1, opp_overlap 2031129 2031131, overlap 2031129 2031152 CCCTAAACATAAAAA CA-ACACTTATAATT TTA AATTATAAGTGTCTG TAAAACAATTTGTTA TERM 2652 2031153 - 2031129 - R 100 -11.7 -4.67478 | opp_overlap 2031129 2031131, overlap 2031126 2031152 TAAACATAAAAACAA CACTTATAATT TTA AATTATAAGTG TCTGTAAAACAATTT TERM 2653 2031129 - 2031153 + r 88 -11.7 -2.8806 | opp_overlap 2031129 2031126 2031152, overlap 2031131 TAAACATAAAAACAA CACTTATAATT TTA AATTATAAGTG TCTGTAAAACAATTT TERM 2654 2031131 - 2031151 + r 71 -8.5 -2.98942 | opp_overlap 2031129 2031126, overlap 2031129 AACATAAAAACAACA CTTATAATT TTA AATTATAAG TGTCTGTAAAACAAT CLL_A1958 2031763 - 2031170 - | phage lipoprotein TERM 2655 2031907 - 2031943 + r 80 -9.7 -3.18602 | opp_overlap 2031908 2031913, overlap 2031908 2031913 ATGGTTAAAATAACA ATAAAAGACTACTAGAT TTA ATCTAATAGTCTTTTAA TATTCAATATTTACT TERM 2656 2031942 - 2031908 - R 100 -15.4 -4.20868 | opp_overlap 2031907 2031908 2031913, overlap 2031913 TGGTTAAAATAACAA TAAAAGACTACTAGAT TTA ATCTAATAGTCTTTTA ATATTCAATATTTAC TERM 2657 2031908 - 2031942 + r 91 -13.2 -2.50438 | opp_overlap 2031908 2031913, overlap 2031907 2031913 TGGTTAAAATAACAA TAAAAGACTACTAGAT TTA ATCTAATAGTCTTTTA ATATTCAATATTTAC TERM 2658 2031937 - 2031913 - R 100 -10.9 -5.06116 | opp_overlap 2031908 2031907 2031913, overlap 2031908 AAAATAACAATAAAA GACTACTAGAT TTA ATCTAATAGTC TTTTAATATTCAATA TERM 2659 2031913 - 2031937 + r 86 -8.7 -4.43681 | opp_overlap 2031913 2031908, overlap 2031908 2031907 AAAATAACAATAAAA GACTACTAGAT TTA ATCTAATAGTC TTTTAATATTCAATA CLL_A1959 2032597 - 2031947 - | hypothetical protein CLL_A1960 2032806 - 2033678 + | integral membrane protein TERM 2660 2033725 - 2033682 - T 100 -10.6 -5.17507 | opp_overlap 2033682 AAAAGTGAATAAAAA TAACAGTAGGTAAATTTGTA TTTT TACAAAACTATCTACTGTTA TTTTTATTTAATATT TERM 2661 2033682 - 2033725 + T 100 -10.6 -5.37171 | opp_overlap 2033682 AAAAGTGAATAAAAA TAACAGTAGGTAAATTTGTA TTTT TACAAAACTATCTACTGTTA TTTTTATTTAATATT CLL_A1961 2034505 - 2033729 - | endonuclease/exonuclease/phosphatase family protein TERM 2662 2034574 - 2034609 + r 75 -8 -4.0127 | opp_overlap 2034576 2034581, overlap 2034576 2034581 CATACTTTGTTCTAA AATAAAATTAATATAA GTCT TTATATTAATTTTATG TTTCATTATAAGTAT TERM 2663 2034607 - 2034576 - R 95 -10.6 -4.07885 | opp_overlap 2034574 2034576 2034581, overlap 2034581 TACTTTGTTCTAAAA TAAAATTAATATAA GTCT TTATATTAATTTTA TGTTTCATTATAAGT TERM 2664 2034576 - 2034607 + r 91 -10.6 -3.59312 | opp_overlap 2034576 2034581, overlap 2034574 2034581 TACTTTGTTCTAAAA TAAAATTAATATAA GTCT TTATATTAATTTTA TGTTTCATTATAAGT TERM 2665 2034602 - 2034581 - R 78 -6.1 -5.07652 | opp_overlap 2034576 2034574 2034581, overlap 2034576 TGTTCTAAAATAAAA TTAATATAA GTCT TTATATTAA TTTTATGTTTCATTA TERM 2666 2034581 - 2034602 + r 76 -6.1 -4.84539 | opp_overlap 2034581 2034576, overlap 2034576 2034574 TGTTCTAAAATAAAA TTAATATAA GTCT TTATATTAA TTTTATGTTTCATTA TERM 2667 2034663 - 2034677 + r 82 -2.2 -6.28401 | TATATATTTCTTTAT TTGAAT TCA ATTTAA TTTTTTTATTTTTTC CLL_A1962 2035292 - 2034669 - | YhbD CLL_A1963 2037506 - 2036028 - | reverse transcriptase TERM 2668 2036266 - 2036279 + g 74 -3.9 -5.22137 | opp_overlap 2036266 ATACATTGACAATTA TTCTT TTTT AAGAA TTTTGTTTTATCCTT CLL_A1964 2039311 - 2037503 - | swim zinc finger domain protein CLL_A1965 2042318 - 2039301 - | hypothetical protein TERM 2669 2042663 - 2042624 - R 95 -6 -6.02919 | TCATAAATAAAAAAA TAACCTAACACATTTAAA TTTT TATAAATGCATTAGATTA TTTTACTTGAGAATA CLL_A1966 2042967 - 2042740 - | hypothetical protein TERM 2670 2043273 - 2043293 + r 74 -8.5 -3.3422 | opp_overlap 2043267 2043275 2043277, overlap 2043272 TTCATAATATTTCAA CATATTTTT TGA AAAAATATG CTTTTTCAGAAAATA TERM 2671 2043447 - 2043416 - R 100 -8.9 -5.32882 | opp_overlap 2043416 TATGATTACAAAAAA CTTCCTTTTAACT TTAAAT AGTTAAAGGGAAG TTTTTTAAATTTATT TERM 2672 2043416 - 2043447 + r 100 -11.1 -5.25805 | opp_overlap 2043416 TATGATTACAAAAAA CTTCCTTTTAACT TTAAAT AGTTAAAGGGAAG TTTTTTAAATTTATT CLL_A1967 2044763 - 2043468 - | xanthine/uracil permease family protein TERM 2673 2043889 - 2043914 + g 78 -2.5 -5.88197 | opp_overlap 2043889 CATGCTCCAAATGTA GTTCCTATTGC ATCT GCAAAAAGAGC TTTTTTTATGTTTGG TERM 2674 2043959 - 2043982 + g 71 -8.3 -3.31269 | CATCTAACATCTTTG CTTTAGTTG TTACTC CAACTAAAG TTCCTATGGTATCAA CLL_A1968 2044930 - 2044787 - | hypothetical protein CLL_A1969 2045544 - 2045044 - | hypothetical protein TERM 2675 2045785 - 2045765 - R 85 -9.9 -3.19913 | opp_overlap 2045759 2045764 2045778, overlap 2045759 2045763 ACACATAATTTAATA CCATATTAA TTT TTAATATGG ATTCCATTTATAATA CLL_A1970 2048219 - 2045979 - | putative beta-lactamase regulatory protein 1 TERM 2676 2046799 - 2046827 + g 81 -2.3 -6.01369 | overlap 2046802 2046806 TCTACTTTAAAATCT TCTTCTAGTGCAT GAT GTGCACTTGCTGA TTTTTTTATTATTTC CLL_A1971 2048642 - 2048247 - | penicillinase repressor TERM 2677 2048280 - 2048290 + g 76 -4 -5.4111 | overlap 2048283 GATTTTTTCCTTTTT TTCT TTA AGAA TTTTTTCTAATTCTT TERM 2678 2048663 - 2048711 + r 93 -13 -3.05935 | gap 1, opp_overlap 2048671 2048675 2048682, overlap 2048667 2048682 TCAGCTCCTTTCTTT TTAATCTACAATTGTAAATCTTA AAGT TAAG-TTTACACTTGTAGATTAA TTACGTCAAGAATAT TERM 2679 2048667 - 2048707 + r 82 -9.4 -3.37344 | gap 1, opp_overlap 2048671 2048675 2048682, overlap 2048663 2048682 CTCCTTTCTTTTTAA TCTACAATTGTAAATCTTA AAGT TAAG-TTTACACTTGTAGA TTAATTACGTCAAGA TERM 2680 2049019 - 2049058 + r 89 -12.6 -2.55818 | opp_overlap 2049011, overlap 2049026 TAATCTATATCTCTA CCTTAAGTATATATAT TGTTTATT ATATATATACTTAAGG TAAATTAAGATTATT TERM 2681 2049187 - 2049156 - R 90 -7.5 -5.04601 | opp_overlap 2049155 2049156, overlap 2049150 TGTACAAATTAAAAA CCACTTAAATACC GTTTTA AATATTTAAGTGG CTTTCATAATGATTA CLL_A1972 2050915 - 2049233 - | methyl-accepting chemotaxis sensory transducer TERM 2682 2051157 - 2051130 - R 73 -2.8 -5.64274 | gap 1, overlap 2051134 TTATGCACAAAAAAA GGCA-TTCTTGTC TTA AACAAGAAACACC TTTTTATATTTTAAT trpB 2052392 - 2051175 - | tryptophan synthase, beta subunit TERM 2683 2051481 - 2051496 + g 77 -4.7 -5.28983 | opp_overlap 2051481 GGCTATAGAATATAC TGGTG CTGGAT CACCA TTTTTATCTTTTAAC lexA 2054013 - 2052472 - | LexA repressor phnA 2054588 - 2054250 - | alkylphosphonate utilization operon protein PhnA CLL_A1976 2055573 - 2054890 - | putative transcriptional regulator, Crp/Fnr family TERM 2684 2055309 - 2055328 + g 87 -8 -4.73677 | CATGACATAGTTCCC CCTTTTTA ATAT TAAAAAGG TTTGTTTCTTCTCCA TERM 2685 2055910 - 2055862 - R 100 -12.9 -4.08974 | opp_overlap 2055867, overlap 2055867 ATCTTATCATATAAA TAAAACCTTAATAACATAGTTAA AAT TTCACTATATTATTAAGGTTTAA ATGCTTTTACAACAT TERM 2686 2055905 - 2055867 - R 100 -12.8 -5.06016 | opp_overlap 2055867, overlap 2055862 ATCATATAAATAAAA CCTTAATAACATAGTTAA AAT TTCACTATATTATTAAGG TTTAAATGCTTTTAC TERM 2687 2055867 - 2055905 + r 91 -10.6 -3.76411 | opp_overlap 2055862 2055867 ATCATATAAATAAAA CCTTAATAACATAGTTAA AAT TTCACTATATTATTAAGG TTTAAATGCTTTTAC CLL_A1977 2056481 - 2055900 - | transcription regulator TERM 2688 2056419 - 2056429 + g 71 -2.6 -5.51612 | CATAAGATTGGTTGC TATA TTA TATA TTTTATTTTTTGTAT TERM 2689 2056628 - 2056657 + H 100 -15.3 -5.07941 | opp_overlap 2056628 TTGTACTATACTGAA CGTATTCATTGAA CTAG TTCAATGAATACG TTTTTATATACTTTT TERM 2690 2056657 - 2056628 - H 100 -15.3 -3.14468 | opp_overlap 2056628 TTGTACTATACTGAA CGTATTCATTGAA CTAG TTCAATGAATACG TTTTTATATACTTTT TERM 2691 2057364 - 2057352 - g 74 -2 -5.59655 | TAAATCAATAAAAAA TTCT TGTGG AGAA GATTACCCAGTCTCT TERM 2692 2058160 - 2058139 - g 70 -5.3 -4.47873 | ATAACAGTTACAAAA GATTTAACT ACTA AATTAAATC CAGACGTAATTATTG TERM 2693 2058308 - 2058320 + G 70 -7.7 -3.48766 | overlap 2058307 GTGGTGGTTTAGTAG GCTGT GAA ACAGC TCTTTGGCTTGTAAA CLL_A1978 2056693 - 2058696 + | 2-enoate reductase TERM 2694 2058778 - 2058812 + T 100 -14.6 -4.85129 | opp_overlap 2058779, overlap 2058779 ATAGTAAATAAAAAA ATGACTATCTAACAAA AAT TTTGTTAGATAGTCAC TTTTTAGTCTCTAAT TERM 2695 2058811 - 2058779 - T 100 -18.1 -5.99154 | opp_overlap 2058778 2058779 TAGTAAATAAAAAAA TGACTATCTAACAAA AAT TTTGTTAGATAGTCA CTTTTTAGTCTCTAA TERM 2696 2058779 - 2058811 + T 100 -18.1 -3.49993 | opp_overlap 2058779, overlap 2058778 TAGTAAATAAAAAAA TGACTATCTAACAAA AAT TTTGTTAGATAGTCA CTTTTTAGTCTCTAA CLL_A1979 2059458 - 2058886 - | HypQ3 CLL_A1980 2060204 - 2059503 - | ExsB protein TERM 2697 2060006 - 2059988 - G 86 -9 -4.37198 | opp_overlap 2059988 AATTTAAATCTAAAA TATGATGT TCT ACATCATA TTTTTTACATATATC TERM 2698 2059988 - 2060006 + g 95 -9 -5.14477 | opp_overlap 2059988 AATTTAAATCTAAAA TATGATGT TCT ACATCATA TTTTTTACATATATC TERM 2699 2060293 - 2060256 - R 100 -13.9 -5.09685 | opp_overlap 2060252 TAACACAGATAAAAA CTATATCAAAATAATTA ACTT TAATCATTTTGATATAG CTCACTCTATTATTT CLL_A1981 2062003 - 2060303 - | pyridine nucleotide-disulphide oxidoreductase family protein CLL_A1982 2062409 - 2062089 - | rhodanese domain protein TERM 2700 2062702 - 2062672 - R 100 -10 -5.72254 | opp_overlap 2062672 TTAAATAATAAAAAA TTCCTTTAGATA TTTTGTG TATCTAAAGGAA TTTTTATTAATCTTT TERM 2701 2062672 - 2062702 + r 100 -10.7 -5.20606 | opp_overlap 2062672 TTAAATAATAAAAAA TTCCTTTAGATAT TTTGT GTATCTAAAGGAA TTTTTATTAATCTTT CLL_A1983 2062837 - 2062709 - | hypothetical protein CLL_A1984 2063441 - 2062905 - | hypothetical protein CLL_A1985 2064538 - 2063459 - | tetratricopeptide repeat domain protein CLL_A1986 2065148 - 2064555 - | putative alpha-NAC protein TERM 2702 2065499 - 2065485 - R 74 -5 -5.19879 | opp_overlap 2065485, overlap 2065486 TTGTAAATAGAAAAA GCCTAT AAA ATAGAC TTACTATCTACCCTA CLL_A1987 2066008 - 2065592 - | transcriptional regulator CLL_A1988 2067500 - 2066361 - | acyl-coa dehydrogenase, short-chain specific CLL_A1989 2069233 - 2067680 - | propionate CoA-transferase CLL_A1990 2070079 - 2069303 - | 3-hydroxybutyryl-CoA dehydratase TERM 2703 2069800 - 2069820 + g 75 -8.5 -3.33744 | overlap 2069799 TAACAACTTGTGGCA TATTTTCAA TAT TTGAAAATA CTTTTTGAGCAAGCA TERM 2704 2070251 - 2070219 - R 76 -9.5 -2.77013 | opp_overlap 2070219, overlap 2070218 2070222 TAGTTTGTCAACAAG TAATTTGTATATAAA CCA TTTCTATACAAATTA TTTTTTATAAAGTTA TERM 2705 2070219 - 2070251 + r 100 -9.5 -5.27923 | opp_overlap 2070218 2070219 2070222 TAGTTTGTCAACAAG TAATTTGTATATAAA CCA TTTCTATACAAATTA TTTTTTATAAAGTTA TERM 2706 2070387 - 2070430 + r 70 -2.6 -5.48063 | opp_overlap 2070395, overlap 2070395 TTAACAAAAACTGCA TAAAAAAATAAGATAGACAT CAAC ATGCCCATCTTATTTATATA TTTTTTATATTAAAT TERM 2707 2070422 - 2070395 - R 100 -8.6 -5.63504 | opp_overlap 2070387 2070395 AACTGCATAAAAAAA TAAGATAGACAT CAAC ATGCCCATCTTA TTTATATATTTTTTA CLL_A1991 2072198 - 2070501 - | monoamine oxidase family protein, membrane associated CLL_A1992 2072342 - 2072911 + | transcriptional regulator CLL_A1993 2073554 - 2073045 - | rubrerythrin family protein TERM 2708 2073691 - 2073707 + r 73 -5.3 -4.88388 | overlap 2073689 CTAATAAGTGTAATC TAAATAT TGG ATATTTA TTTTTATAGCATTAT TERM 2709 2073758 - 2073772 + r 75 -5.8 -5.05113 | TTTATGAATTGGCCA TTTACA TTC TGTAAA TTTTATTTGTGTAAA CLL_A1994 2074327 - 2073740 - | hypothetical protein TERM 2710 2074162 - 2074149 - G 71 -3.9 -5.14563 | opp_overlap 2074149 GTTTTCACTAAAAAA GAAAA TTCT TTTTC TTTTGTGCTAACTAA CLL_A1995 2074908 - 2074348 - | O-acetyltransferase family protein TERM 2711 2075733 - 2075747 + G 73 -4.3 -5.00884 | opp_overlap 2075733 TGCCATTATAATCAA TCTCA CTTTA TGAGA TTTTTTAAAAAACAT CLL_A1996 2075076 - 2075951 + | AraC-family transcriptional regulator TERM 2712 2075936 - 2075977 + T 100 -22.1 -3.31144 | opp_overlap 2075941, overlap 2075941 AACTCCTAAAGGATT CAAAACAAGGCTTTAAATA ATAT TATTTAAAGCCTTGTTTTG TTATAAAAATAAGAA TERM 2713 2075972 - 2075941 - T 100 -16.2 -4.26079 | opp_overlap 2075941 2075936 CTAAAGGATTCAAAA CAAGGCTTTAAATA ATAT TATTTAAAGCCTTG TTTTGTTATAAAAAT TERM 2714 2075941 - 2075972 + T 100 -16.2 -4.77567 | opp_overlap 2075941, overlap 2075936 CTAAAGGATTCAAAA CAAGGCTTTAAATA ATAT TATTTAAAGCCTTG TTTTGTTATAAAAAT CLL_A1997 2076237 - 2076028 - | hypothetical protein TERM 2715 2076316 - 2076326 + H 70 -2.6 -5.48514 | CATTACATTTCTTAT TATT TTT AATA TTTTTATTTATTACT TERM 2716 2076846 - 2076869 + H 93 -6.8 -5.86976 | TAATTAAGTATTTAT CTCTATGC CTTTTTTT GCATAGAG TTTTTTATTTTGTGC TERM 2717 2076931 - 2076959 + H 77 -7.7 -4.11039 | opp_overlap 2076931 2076936 2076938, overlap 2076936 ATATTGATAAAAATT TAAAATTCATAAT CAC ATTATGGATTTTG TTATTTACTTAATAT TERM 2718 2076936 - 2076954 + H 75 -5.4 -5.03961 | opp_overlap 2076931 2076936 2076938, overlap 2076931 GATAAAAATTTAAAA TTCATAAT CAC ATTATGGA TTTTGTTATTTACTT CLL_A1998 2076995 - 2077243 + | hypothetical protein CLL_A1999 2077310 - 2078728 + | thiamine biosynthesis protein ThiH TERM 2719 2078806 - 2078758 - T 88 -11.5 -2.8155 | gap 1, opp_overlap 2078769 2078797, overlap 2078769 TATAATTAAAATTTA CAATATAAAAA-GGTAGACTAA TAAATT TTAGTCTACCTTTTTTATATAG CATAAAACTTATCTC TERM 2720 2078794 - 2078769 - T 100 -10.6 -5.1523 | opp_overlap 2078769, overlap 2078758 TTTACAATATAAAAA GGTAGACTAA TAAATT TTAGTCTACC TTTTTTATATAGCAT TERM 2721 2078769 - 2078794 + T 100 -10.6 -5.37043 | opp_overlap 2078758 2078769 TTTACAATATAAAAA GGTAGACTAA TAAATT TTAGTCTACC TTTTTTATATAGCAT CLL_A2000 2080755 - 2078815 - | periplasmic [Fe] hydrogenase 1 TERM 2722 2081237 - 2081220 - R 100 -11.3 -4.65722 | opp_overlap 2081219 2081218 CTATACATAAATAAA GGCTTGG AATG CCAAGCC CCTTTAAACACTTAT CLL_A2001 2082344 - 2081259 - | hydrogenase isoenzymes formation protein HypD hypE 2083496 - 2082483 - | hydrogenase expression/formation protein HypE hypC 2083876 - 2083661 - | hydrogenase assembly chaperone HypC/HupF hypF 2086245 - 2083894 - | [NiFe] hydrogenase maturation protein HypF TERM 2723 2085800 - 2085813 + g 81 -3.1 -5.89921 | ATAGTTGTGTTGCAT CTATC ATAT GGTAG TTTTTTTATTATAGT CLL_A2005 2086601 - 2086260 - | hydrogenase expression/synthesis, HypA CLL_A2006 2087191 - 2086721 - | hydrogenase maturation protease superfamily hupL 2088603 - 2087188 - | [Ni/Fe] hydrogenase, large subunit hupS 2089549 - 2088608 - | [Ni/Fe] hydrogenase, small subunit TERM 2724 2089673 - 2089651 - R 73 -4.2 -5.252 | opp_overlap 2089655, overlap 2089638 2089655 TATTTGTATAAAAAA CAAACTAAGA AAT TCTTAGTGTA TTAAAAATCATCATT TERM 2725 2089669 - 2089655 - R 87 -7.2 -5.13354 | opp_overlap 2089655, overlap 2089651 TGTATAAAAAACAAA CTAAGA AAT TCTTAG TGTATTAAAAATCAT CLL_A2009 2090777 - 2089896 - | transcriptional regulator, LysR family TERM 2726 2090874 - 2090900 + H 78 -5.3 -5.21236 | TAATTTCAATCATTC CAACATAATTT CATTT AAACTATGTTG TTTTTATTATAACTT CLL_A2010 2091101 - 2091922 + | nitroreductase family protein fused to ferredoxin domain TERM 2727 2092022 - 2092008 - T 71 -5.8 -4.55689 | opp_overlap 2091997 2092008 ATTACTTAGACAAAA TTTAGA TTC TCTAAA AAGTAGAATTTAAAA TERM 2728 2092124 - 2092144 + T 87 -4.1 -6.32017 | CATATTTTTTAAGTG CAATTATAA ATA TAATAATTG TTTTTTTTATTTGTT TERM 2729 2092380 - 2092366 - T 76 -4.4 -5.33921 | AAATCAATGAAAAAA TTAAAA CTT TTTTAA TTAGGCTTCCTTTCA TERM 2730 2093077 - 2093032 - T 70 -4.9 -4.87807 | TGAATATAGCAAAAA GACCTTTATATAGTGCATCTC TCCC AAGAAAAACTATACAAAGATC TTAACCAAATAAAAA CLL_A2011 2093351 - 2093238 - | hypothetical protein CLL_A2012 2102807 - 2093589 - | protein NdvB TERM 2731 2097586 - 2097607 + g 71 -4.5 -4.91712 | AGGCTTCTCCCCTTA TCACTTAAA TTAT TTAAAGTGA TTTTTCTAACTTCAA TERM 2732 2100353 - 2100364 + g 73 -3 -5.41143 | opp_overlap 2100362 ATATTTTCCATTTGT TAAG AGAA CTTA TTTTTTTAGAAAATA CLL_A2013 2104237 - 2103047 - | hypothetical protein TERM 2733 2103195 - 2103181 - G 80 -5.8 -5.09173 | CAACAGCTGAAAAAA CATATA CGC TATATG TAAATGATTTTAATA TERM 2734 2104360 - 2104381 + r 72 -6.1 -4.39828 | opp_overlap 2104363 2104379 CAAAACTTTTACATT TAATATTAT TACC ATAATATTA TTTTATAAAGCTATT TERM 2735 2104421 - 2104475 + r 100 -14.9 -3.05066 | gap 1, opp_overlap 2104427 2104433, overlap 2104421 2104424 2104427 2104433 AATTCATAATGATTC TATA-TATATAAAGGGCTATTACATT TTAA AATGCAATAGCCCTTTGTATAATATA TATTAACAGCTTATT TERM 2736 2104421 - 2104473 + r 100 -14 -3.0782 | gap 1, opp_overlap 2104427 2104433, overlap 2104421 2104424 2104427 2104433 AATTCATAATGATTC TATATATATAAAGGGCTATTACATT TTAA AATGCAATAGCCCTTTGTATA-ATA TATATTAACAGCTTA TERM 2737 2104424 - 2104471 + r 100 -13.8 -3.09452 | opp_overlap 2104427 2104433, overlap 2104421 2104421 2104427 2104433 TCATAATGATTCTAT ATATATAAAGGGCTATTACATT TTAA AATGCAATAGCCCTTTGTATAA TATATATTAACAGCT TERM 2738 2104427 - 2104468 + r 100 -15.5 -2.75975 | opp_overlap 2104427 2104433, overlap 2104424 2104421 2104421 2104433 TAATGATTCTATATA TATAAAGGGCTATTACATT TTAA AATGCAATAGCCCTTTGTA TAATATATATTAACA TERM 2739 2104468 - 2104427 - R 100 -15.5 -2.90688 | opp_overlap 2104424 2104421 2104421 2104427 2104433, overlap 2104433 TAATGATTCTATATA TATAAAGGGCTATTACATT TTAA AATGCAATAGCCCTTTGTA TAATATATATTAACA TERM 2740 2104462 - 2104433 - R 100 -14.5 -4.17296 | opp_overlap 2104427 2104424 2104421 2104421 2104433, overlap 2104427 TTCTATATATATAAA GGGCTATTACATT TTAA AATGCAATAGCCC TTTGTATAATATATA TERM 2741 2104433 - 2104462 + r 100 -12.3 -4.12475 | opp_overlap 2104433 2104427, overlap 2104427 2104424 2104421 2104421 TTCTATATATATAAA GGGCTATTACATT TTAA AATGCAATAGCCC TTTGTATAATATATA CLL_A2014 2106160 - 2104505 - | ABC transporter, ATP-binding protein TERM 2742 2105118 - 2105106 - G 72 -6.3 -4.26076 | opp_overlap 2105106 2105104, overlap 2105086 TGACTTTGATCAAAA TATCC TAT GGATA TATCTTGTGACAATC TERM 2743 2105497 - 2105513 + g 71 -3.8 -5.17488 | TCTTTGGTGTTTTTC TAATAG AATCC CTATTA TTTTCTTTTCCTATT TERM 2744 2106189 - 2106167 - R 100 -7.8 -5.94597 | overlap 2106186 TAATACCAAAAAAAA TCCCTCCTAA ATC TTAGAAGAGA GTATATAATAATCCC TERM 2745 2106466 - 2106426 - R 79 -7.1 -4.6759 | opp_overlap 2106427 2106428 2106430, overlap 2106427 2106428 2106430 AACACCCCAATAAAA CTTAGTAGTAACTCATACT ATA AATATAAGTTACTACTACT ATCTTTAATATAAAG TERM 2746 2106465 - 2106427 - R 90 -10.6 -3.39469 | opp_overlap 2106427 2106428 2106430, overlap 2106426 2106428 2106430 ACACCCCAATAAAAC TTAGTAGTAACTCATACT ATA AATATAAGTTACTACTAC TATCTTTAATATAAA TERM 2747 2106428 - 2106464 + r 75 -9.7 -2.58959 | opp_overlap 2106427 2106426 2106428 2106430, overlap 2106427 2106430 CACCCCAATAAAACT TAGTAGTAACTCATACT ATA AATATAAGTTACTACTA CTATCTTTAATATAA TERM 2748 2106464 - 2106428 - R 100 -14.1 -2.62958 | opp_overlap 2106428 2106427 2106430, overlap 2106427 2106426 2106430 CACCCCAATAAAACT TAGTAGTAACTCATACT ATA AATATAAGTTACTACTA CTATCTTTAATATAA TERM 2749 2106462 - 2106430 - R 89 -12.3 -2.84841 | opp_overlap 2106430 2106428 2106427, overlap 2106428 2106427 2106426 CCCCAATAAAACTTA GTAGTAACTCATACT ATA AATATAAGTTACTAC TACTATCTTTAATAT TERM 2750 2106879 - 2106931 + r 100 -17.6 -3.24858 | gap 1, opp_overlap 2106885 2106887 2106892, overlap 2106881 2106892 ACACCAGTGTTAATT TATATATAGTAAAGGCTATTGCATT TTAA AATGCAATAGCCTTTACTATA-AGA TCTATTAATTATTTG TERM 2751 2106881 - 2106930 + r 100 -20.5 -2.5383 | opp_overlap 2106885 2106887 2106892, overlap 2106879 2106892 ACCAGTGTTAATTTA TATATAGTAAAGGCTATTGCATT TTAA AATGCAATAGCCTTTACTATAAG ATCTATTAATTATTT TERM 2752 2106926 - 2106885 - R 100 -23.5 -2.94912 | opp_overlap 2106881 2106879 2106892, overlap 2106887 2106892 GTGTTAATTTATATA TAGTAAAGGCTATTGCATT TTAA AATGCAATAGCCTTTACTA TAAGATCTATTAATT TERM 2753 2106924 - 2106887 - R 100 -21.7 -3.02739 | opp_overlap 2106881 2106879 2106892, overlap 2106885 2106892 GTTAATTTATATATA GTAAAGGCTATTGCATT TTAA AATGCAATAGCCTTTAC TATAAGATCTATTAA TERM 2754 2106919 - 2106892 - R 100 -15.8 -3.91196 | opp_overlap 2106881 2106879 2106892, overlap 2106887 2106885 TTTATATATAGTAAA GGCTATTGCATT TTAA AATGCAATAGCC TTTACTATAAGATCT TERM 2755 2106892 - 2106919 + r 100 -15.8 -3.84266 | opp_overlap 2106892 2106887 2106885, overlap 2106881 2106879 TTTATATATAGTAAA GGCTATTGCATT TTAA AATGCAATAGCC TTTACTATAAGATCT CLL_A2015 2107875 - 2106940 - | hypothetical protein CLL_A2016 2108161 - 2108892 + | exonuclease, RNase T and DNA polymerase III TERM 2756 2108973 - 2109014 + T 77 -7.6 -4.12599 | opp_overlap 2108975 2108979 2108984, overlap 2108975 2108979 2108984 AGTTTAAGTACATAT AATAAATAAAAGTGAAGT AAAGTA ACATCACTTTTATTTATA TTTTAAAACATTATT TERM 2757 2109012 - 2108975 - T 89 -10.2 -3.646 | opp_overlap 2108975 2108973 2108979 2108984, overlap 2108979 2108984 TTTAAGTACATATAA TAAATAAAAGTGAAGT AAAGTA ACATCACTTTTATTTA TATTTTAAAACATTA TERM 2758 2108975 - 2109012 + T 89 -10.2 -3.6543 | opp_overlap 2108975 2108979 2108984, overlap 2108973 2108979 2108984 TTTAAGTACATATAA TAAATAAAAGTGAAGT AAAGTA ACATCACTTTTATTTA TATTTTAAAACATTA TERM 2759 2108979 - 2109008 + T 75 -6.6 -4.45168 | opp_overlap 2108975 2108979 2108984, overlap 2108975 2108973 2108984 AGTACATATAATAAA TAAAAGTGAAGT AAAGTA ACATCACTTTTA TTTATATTTTAAAAC TERM 2760 2109008 - 2108979 - T 75 -6.6 -4.43576 | opp_overlap 2108979 2108975 2108973 2108984, overlap 2108975 2108984 AGTACATATAATAAA TAAAAGTGAAGT AAAGTA ACATCACTTTTA TTTATATTTTAAAAC CLL_A2017 2109944 - 2109063 - | LysR-family transcriptional regulator CLL_A2018 2110060 - 2111253 + | hypothetical protein TERM 2761 2111260 - 2111315 + T 100 -15.3 -2.58887 | opp_overlap 2111261 2111266, overlap 2111266 2111271 ACAAAATAATACTTA ATTAAATATAATAGCAACCTAGA TTAATCAATT TCTAGGTTGCTATTATATTTAAC ATAATTTTGTTTACA TERM 2762 2111314 - 2111261 - T 100 -18.8 -3.28217 | opp_overlap 2111260 2111266 2111271, overlap 2111266 CAAAATAATACTTAA TTAAATATAATAGCAACCTAGA TTAATCAATT TCTAGGTTGCTATTATATTTAA CATAATTTTGTTTAC TERM 2763 2111309 - 2111266 - T 100 -14.3 -3.95817 | opp_overlap 2111266 2111260 2111271, overlap 2111261 TAATACTTAATTAAA TATAATAGCAACCTAGA TTAATCAATT TCTAGGTTGCTATTATA TTTAACATAATTTTG TERM 2764 2111266 - 2111309 + T 100 -14.3 -3.66424 | opp_overlap 2111261 2111266, overlap 2111260 2111271 TAATACTTAATTAAA TATAATAGCAACCTAGA TTAATCAATT TCTAGGTTGCTATTATA TTTAACATAATTTTG TERM 2765 2111271 - 2111304 + T 90 -9.8 -3.82946 | opp_overlap 2111266 2111261, overlap 2111266 2111260 CTTAATTAAATATAA TAGCAACCTAGA TTAATCAATT TCTAGGTTGCTA TTATATTTAACATAA CLL_A2019 2112275 - 2111346 - | DNA polymerase III subunit epsilon TERM 2766 2112572 - 2112607 + r 78 -7.8 -4.26602 | opp_overlap 2112577, overlap 2112577 2112580 TTTTCTGTCTAAACA AAAAACACCAATACTT TCTT AAGTATTGATGTTTTA TTATTATTCTTTTTT TERM 2767 2112577 - 2112602 + r 90 -7.7 -5.01823 | opp_overlap 2112577, overlap 2112572 2112580 TGTCTAAACAAAAAA CACCAATACTT TCTT AAGTATTGATG TTTTATTATTATTCT TERM 2768 2112602 - 2112577 - R 100 -9.9 -5.63517 | opp_overlap 2112572 2112577 2112580 TGTCTAAACAAAAAA CACCAATACTT TCTT AAGTATTGATG TTTTATTATTATTCT CLL_A2020 2114439 - 2112646 - | hypothetical protein CLL_A2021 2114588 - 2114442 - | hypothetical protein CLL_A2022 2116449 - 2114602 - | neopullulanase CLL_A2023 2117812 - 2116538 - | putative bacterial extracellular solute-binding protein CLL_A2024 2118662 - 2117838 - | maltose:maltodextrin transport system permease CLL_A2025 2120014 - 2118677 - | maltose:maltodextrin transport system permease TERM 2769 2120255 - 2120212 - R 100 -15.8 -2.54586 | opp_overlap 2120218, overlap 2120197 2120218 2120246 TTGAAAATTTAATAT TCAAAAGATATTTTACTTAA TTTA TTAAGTAAAATATCTTATGA TAGCAATAAACTGCA TERM 2770 2120249 - 2120218 - R 100 -13.4 -4.28656 | opp_overlap 2120218, overlap 2120212 2120246 ATTTAATATTCAAAA GATATTTTACTTAA TTTA TTAAGTAAAATATC TTATGATAGCAATAA TERM 2771 2120218 - 2120249 + r 100 -13.4 -3.41051 | opp_overlap 2120218 2120212 2120246 ATTTAATATTCAAAA GATATTTTACTTAA TTTA TTAAGTAAAATATC TTATGATAGCAATAA TERM 2772 2120559 - 2120540 - R 91 -7.2 -5.45802 | opp_overlap 2120540 TCTCCAAAACAAAAA GTGTGAAT TTTT ATCCACAC TTTACAATTACATAT CLL_A2026 2121495 - 2120578 - | transcriptional regulator, LacI family CLL_A2027 2121712 - 2122635 + | hypothetical protein TERM 2773 2122684 - 2122649 - T 95 -13.5 -3.03821 | opp_overlap 2122649, overlap 2122644 AATAATATAATTATA GCCACATGTTTTGAA CTGTAT TTCAAAGCATGTGGC TTTTTGCTCTTCATC TERM 2774 2122649 - 2122684 + T 100 -15.7 -4.89233 | opp_overlap 2122649 2122644 AATAATATAATTATA GCCACATGTTTTGAA CTGTAT TTCAAAGCATGTGGC TTTTTGCTCTTCATC CLL_A2028 2123515 - 2122766 - | cobalt import ATP-binding protein CbiO CLL_A2029 2124322 - 2123516 - | cobalt ABC transporter, inner membrane subunit CbiQ TERM 2775 2124222 - 2124196 - G 100 -9.7 -4.65263 | opp_overlap 2124199 ATTTGCTAAAAGAAA CAACAATTATT AAATA AATAATTGTTG TCAATACTTTCGGAA CLL_A2030 2125405 - 2124344 - | cobalamin TERM 2776 2125353 - 2125339 - G 80 -8.6 -3.93262 | overlap 2125333 TTGAATAAACTGAAA CTGCAA CGG TTGCAG CCCACATAGTTCCAC TERM 2777 2125722 - 2125685 - R 100 -13.1 -4.58283 | opp_overlap 2125685 2125690, overlap 2125692 TAATTTTTCCAAAAA TAAAAAACATCAATACT TTTT AGTACTGATGTCTTTTA TTTATATACTATTTG TERM 2778 2125685 - 2125722 + r 82 -8.7 -4.15197 | opp_overlap 2125685 2125692, overlap 2125690 TAATTTTTCCAAAAA TAAAAAACATCAATACT TTTT AGTACTGATGTCTTTTA TTTATATACTATTTG TERM 2779 2125690 - 2125717 + r 70 -4.2 -5.06016 | opp_overlap 2125685 2125692, overlap 2125685 TTTCCAAAAATAAAA AACATCAATACT TTTT AGTACTGATGTC TTTTATTTATATACT TERM 2780 2125715 - 2125692 - R 100 -9 -5.93252 | opp_overlap 2125690 2125685, overlap 2125685 TCCAAAAATAAAAAA CATCAATACT TTTT AGTACTGATG TCTTTTATTTATATA mscL 2126218 - 2125802 - | large conductance mechanosensitive channel protein TERM 2781 2126459 - 2126403 - R 75 -5.4 -5.03994 | gap 2, opp_overlap 2126403, overlap 2126385 2126381 2126405 TTTTAGACATAAAAA TACTCCTCCTTGTAATAGACATTTTTGA TTT TCTTAAGTGCCTAT-ACAAGG-GGAGCA TATCCTTAATTAGTC CLL_A2032 2127297 - 2126476 - | transcriptional regulator CLL_A2033 2128609 - 2127401 - | hypothetical protein TERM 2782 2127737 - 2127764 + g 71 -7.8 -3.63805 | TCTACCTTCAAACTT CTTTGGAACAGT GTCT ATTGGTCCAAAG TTTACCATGTCCAAT TERM 2783 2128709 - 2128679 - R 72 -4.8 -5.02074 | opp_overlap 2128679 TTAGTTTTTAAAAAA CGTTATCACAACTT ATA AATTAATGATAACG TTTCTCTAATTCGCG CLL_A2034 2129943 - 2128756 - | transcriptional regulator, AraC family protein TERM 2784 2130192 - 2130144 - R 73 -7.1 -4.03793 | gap 1, opp_overlap 2130154, overlap 2130142 2130145 TTACATAATAAAATA CCCCTTTATAG-AAACAGTT TTCTTATTTT AACTGTCTACTATAAAGGGA GCATATAATTTAAAT TERM 2785 2130191 - 2130145 - R 71 -8.4 -3.01191 | gap 1, opp_overlap 2130154, overlap 2130144 2130142 TACATAATAAAATAC CCCTTTATAG-AAACAGTT TTCTTATTTT AACTGTCTACTATAAAGGG AGCATATAATTTAAA CLL_A2035 2131015 - 2130260 - | putative hemerythrin HHE cation binding domain subfamily TERM 2786 2130481 - 2130491 + g 71 -4 -5.12971 | CTTCCTCAGCTGTCT GTTT TAA AAAC TTTTTCTTAGCTCTT TERM 2787 2130758 - 2130783 + g 70 -4.8 -4.73108 | AGAAATAAGTGTATA CAAAACATGA TCTGGT TCAAGTTTTG TTTTAATTTTATCGA CLL_A2036 2131753 - 2131037 - | nitric oxide-dependent regulator TERM 2788 2131984 - 2131953 - R 88 -6.8 -5.5943 | opp_overlap 2131953 AAATCATTAAAAAAA GCTCATTATTAC CGATCAAT GTAATAATAAGC TTTTTTTAAATATAA TERM 2789 2131953 - 2131984 + r 78 -4.6 -5.50499 | opp_overlap 2131953 AAATCATTAAAAAAA GCTCATTATTAC CGATCAAT GTAATAATAAGC TTTTTTTAAATATAA CLL_A2037 2132703 - 2131990 - | Crp-family transcriptional regulator CLL_A2038 2132762 - 2132896 + | hypothetical protein TERM 2790 2132903 - 2132879 - T 76 -4.4 -5.43329 | overlap 2132881 AAAAATAAAATAAAA GCTATTTCTA ATTTA TAGAAATACC ATGCCTTCATACCGA TERM 2791 2133190 - 2133223 + T 100 -13.3 -4.58424 | opp_overlap 2133196, overlap 2133196 TATTAATATTATGCA CGAAAAGAGGATTCG AATT TGAACCCTCTTTTCG TTTTATGTGCTAGTA TERM 2792 2133196 - 2133217 + T 70 -5.1 -4.75518 | opp_overlap 2133196, overlap 2133190 TATTATGCACGAAAA GAGGATTCG AATT TGAACCCTC TTTTCGTTTTATGTG TERM 2793 2133217 - 2133196 - T 73 -6.6 -4.28994 | opp_overlap 2133196 2133190 TATTATGCACGAAAA GAGGATTC GAATTT GAACCCTC TTTTCGTTTTATGTG CLL_A2039 2133699 - 2133283 - | flavodoxin CLL_A2040 2135251 - 2133791 - | succinate-semialdehyde dehydrogenase (NADP+) TERM 2794 2133979 - 2133989 + g 80 -5.4 -5.28176 | opp_overlap 2133979 CAGCCACATAAAAAG CATC ATT GATG TTTTTTGTAAATACA CLL_A2041 2136073 - 2135303 - | oxidoreductase NAD-binding domain protein TERM 2795 2136297 - 2136322 + H 70 -3.4 -5.30189 | opp_overlap 2136297 CATGAAATATAAAAA CTATCTCAAA AATAAA TTTAAGATAG TTTTTTAATATTCTC TERM 2796 2136322 - 2136297 - H 78 -5.6 -5.22289 | opp_overlap 2136297 CATGAAATATAAAAA CTATCTCAAA AATAAA TTTAAGATAG TTTTTTAATATTCTC CLL_A2042 2136566 - 2137798 + | flavodoxin TERM 2797 2137863 - 2137818 - T 100 -14.9 -3.26813 | opp_overlap 2137818 2137819, overlap 2137819 2137833 ATTAGACATCATTAA GGGGCTGTTGCAAAACTAACT TAAA AGTTAGTTTTGCAGCAGCTCA TTTTTGTTATAAAAA TERM 2798 2137818 - 2137863 + T 100 -19.3 -5.18726 | opp_overlap 2137818 2137819 2137833, overlap 2137819 ATTAGACATCATTAA GGGGCTGTTGCAAAACTAACT TAAA AGTTAGTTTTGCAGCAGCTCA TTTTTGTTATAAAAA TERM 2799 2137862 - 2137819 - T 100 -18.4 -2.55606 | opp_overlap 2137819 2137818, overlap 2137818 2137833 TTAGACATCATTAAG GGGCTGTTGCAAAACTAACT TAAA AGTTAGTTTTGCAGCAGCTC ATTTTTGTTATAAAA TERM 2800 2137819 - 2137862 + T 100 -22.8 -3.70512 | opp_overlap 2137818 2137819 2137833, overlap 2137818 TTAGACATCATTAAG GGGCTGTTGCAAAACTAACT TAAA AGTTAGTTTTGCAGCAGCTC ATTTTTGTTATAAAA TERM 2801 2137907 - 2137886 - T 100 -8.1 -5.98675 | opp_overlap 2137886 TATAAAAATAAAAAA TGTGAATTC CTAA GAATCCACA TTCATTGTATAATTA TERM 2802 2138341 - 2138329 - T 93 -9.1 -4.78752 | opp_overlap 2138329 ATCATAACTGAAAAA GGAGC GTC GCTCC TGATTAAAATTAATC TERM 2803 2138329 - 2138341 + T 73 -9.1 -2.75957 | opp_overlap 2138329 ATCATAACTGAAAAA GGAGC GTC GCTCC TGATTAAAATTAATC CLL_A2043 2138607 - 2138446 - | rubredoxin CLL_A2044 2139038 - 2138805 - | hemerythrin HHE cation binding protein TERM 2804 2139321 - 2139296 - R 100 -10.5 -4.44667 | opp_overlap 2139296 TTTTTTAATAAGAAA TCCTAGCTACA AATT CGCAGCTAGGA TTCTATATTGTAAAT TERM 2805 2139296 - 2139321 + r 73 -7.6 -3.7319 | opp_overlap 2139296 TTTTTTAATAAGAAA TCCTAGCTAC AAATTC GCAGCTAGGA TTCTATATTGTAAAT hcp 2141104 - 2139401 - | hydroxylamine reductase TERM 2806 2141303 - 2141267 - R 82 -5.4 -5.48063 | opp_overlap 2141272 2141296, overlap 2141296 ATTTAATACAAAAAA GAACCTAATTGATG TTATAGCTC CATCAATTAAATTC TTTTAATTATATTAT CLL_A2046 2141863 - 2141321 - | hypothetical protein CLL_A2047 2143275 - 2142001 - | peptidase, S41 family TERM 2807 2142391 - 2142409 + g 78 -4.6 -5.38047 | opp_overlap 2142390 2142393, overlap 2142393 ATTATCTCTTAAATC TACAACTA ATT TAGTTGCA TTTTTTGTATCAATA TERM 2808 2142963 - 2142977 + g 72 -5.8 -4.62471 | TAGTATGACTGTCAT TAATAG ATA CTATTA TTTTTGCAAGTTCAC TERM 2809 2143415 - 2143393 - R 85 -6.3 -5.56112 | opp_overlap 2143396 2143412 ATAAAAATCAAAAAA CACCAACAC GTTCA GTGCTGATG TTTATAATTTAATTA TERM 2810 2144863 - 2144832 - R 100 -12.6 -5.28983 | opp_overlap 2144830 2144838 2144838 TCTAAAATACAAAAA TCCAAAGTAAAAAT TTAC ATTTCTACTTTGGA CAATATTTTGGTGGC TERM 2811 2144985 - 2144999 + r 70 -7.8 -3.322 | opp_overlap 2144995 CGAACCCCTGGCCCA CGCCTT AGA AGGGCG TTGCTCTATCCAGCT TERM 2812 2145313 - 2145259 - R 95 -10.5 -3.9444 | opp_overlap 2145271 2145273 2145276, overlap 2145273 TAAACTTTAATTAAA TTTTAATATAAAAATAAGAGCCTAT TTAAG ATAGACTCTTATCTATATATTAACA TTCACTAAATATTAC TERM 2813 2145299 - 2145273 - R 100 -8.9 -5.09762 | opp_overlap 2145271 2145273 2145276, overlap 2145259 ATTTTAATATAAAAA TAAGAGCCTAT TTAAG ATAGACTCTTA TCTATATATTAACAT TERM 2814 2145611 - 2145580 - R 100 -12.6 -5.46129 | opp_overlap 2145578 2145586 TAATAAAGTAAAAAA TCCAAAGTAAAAAT ATTA ATTCTTACTTTGGA CAATATTTGGTGGCT TERM 2815 2145732 - 2145746 + r 70 -7.8 -3.322 | opp_overlap 2145742 CGAACCCCTGGCCCA CGCCTT AGA AGGGCG TTGCTCTATCCAGCT TERM 2816 2146083 - 2146058 - R 100 -13.5 -5.04385 | opp_overlap 2146063 TATAGCTCGAAAAAA TTATAGGTGGA ATTG TCCACCTATAA TGCTCCATATAAGAA TERM 2817 2146063 - 2146078 + r 73 -9 -2.83343 | opp_overlap 2146058 CTCGAAAAAATTATA GGTGGA ATTG TCCACC TATAATGCTCCATAT CLL_A2052 2147025 - 2146234 - | putative esterase/lipase CLL_A2053 2147268 - 2148137 + | AraC-type DNA-binding domain-containing protein TERM 2818 2148164 - 2148196 + F 100 -12.3 -5.24796 | opp_overlap 2148164 GCCTCCACCATGAAA TCCACGATAATAT CATTAAA ATATTATCGTGGA TTTTTATTATATAAA TERM 2819 2148196 - 2148164 - f 95 -13 -3.78775 | opp_overlap 2148164 GCCTCCACCATGAAA TCCACGATAATATC ATTAA AATATTATCGTGGA TTTTTATTATATAAA TERM 2820 2148508 - 2148490 - g 73 -9 -2.70932 | opp_overlap 2148484, overlap 2148492 TTTCTTGTTGAAGGA TACTTCTA TAC TAGAAGTA AGAAAAAATATGGAA TERM 2821 2148830 - 2148846 + G 79 -6.7 -4.74611 | AAATTGTGGGATATT TACTATT ATC AATAGTA TTATTTTTTATGGTC CLL_A2054 2148334 - 2149062 + | hypothetical protein TERM 2822 2149213 - 2149267 + T 89 -9.7 -4.23529 | gap 2, opp_overlap 2149217, overlap 2149215 2149217 AATCTTTGAAAATTA AAAAGGGGCT-TATCAGATT-GAGTTT AAA AAACTCTAATCTGATACAGTCCCTATC TTTATATCTTAATAT TERM 2823 2149215 - 2149265 + T 95 -12.3 -3.70645 | gap 2, opp_overlap 2149217, overlap 2149213 2149217 TCTTTGAAAATTAAA AAGGGGCT-TATCAGATT-GAGTTT AAA AAACTCTAATCTGATACAGTCCCTA TCTTTATATCTTAAT TERM 2824 2149217 - 2149263 + T 100 -14.9 -3.42088 | gap 2, opp_overlap 2149217, overlap 2149215 2149213 TTTGAAAATTAAAAA GGGGCT-TATCAGATT-GAGTTT AAA AAACTCTAATCTGATACAGTCCC TATCTTTATATCTTA TERM 2825 2149263 - 2149217 - T 100 -12.7 -5.0925 | gap 2, opp_overlap 2149217 2149215 2149213 TTTGAAAATTAAAAA GGGGCT-TATCAGATT-GAGTTT AAA AAACTCTAATCTGATACAGTCCC TATCTTTATATCTTA CLL_A2055 2150514 - 2149303 - | transporter, major facilitator family TERM 2826 2150600 - 2150572 - R 70 -4.8 -4.84642 | gap 2 TCGAAATTAATAAAA CTACTCC-T-TGTA AAA TACATATGGAGTAG CCTTCCAATTCAATT CLL_A2056 2151509 - 2150619 - | glucokinase manA 2152455 - 2151520 - | mannose-6-phosphate isomerase, class I CLL_A2058 2154234 - 2152633 - | trehalose-6-phosphate hydrolase TERM 2827 2152905 - 2152925 + g 78 -5.6 -4.98911 | opp_overlap 2152905 CTTTATATAAATTAA TTAAAGAA CCCTC TTCTTTAA TTTGTTTTTCTACTA TERM 2828 2153123 - 2153135 + g 74 -4.9 -5.05113 | TATTTAGTGACTCCT TGAAT ATC ATTCA TTTTATTTATATCAA TERM 2829 2153327 - 2153350 + g 71 -4 -5.04222 | overlap 2153324 ATTGTAGGTATTTGA TATGAATCAT AATT ATCATTCATA TTTTTAATTTCCTTA CLL_A2059 2155166 - 2154249 - | hypothetical protein CLL_A2060 2156241 - 2155180 - | transcriptional regulator TERM 2830 2156302 - 2156272 - R 84 -9.2 -3.66883 | opp_overlap 2156272 CTAATATACTCTAAA GGCTATCAATTAAT ATT ACTAATTAACAGCC TCATGTATTATTTAT CLL_A2061 2157398 - 2156310 - | unknown conserved protein CLL_A2062 2158239 - 2157412 - | sugar ABC transporter CLL_A2063 2159162 - 2158266 - | sugar ABC transporter permease protein TERM 2831 2159218 - 2159184 - R 81 -8.8 -3.86346 | opp_overlap 2159188 2159215, overlap 2159188 TCACTCCTTTATAAA CAAAGCAAAGATAAAA CAA TATCATCTTTGCTTTA TTTTAATAAACTATT TERM 2832 2159214 - 2159188 - R 77 -7.4 -4.55295 | opp_overlap 2159188, overlap 2159184 TCCTTTATAAACAAA GCAAAGATAAAA CAA TATCATCTTTGC TTTATTTTAATAAAC CLL_A2064 2160611 - 2159229 - | sugar ABC transporter periplasmic protein TERM 2833 2160900 - 2160937 + r 100 -23.1 -3.61268 | opp_overlap 2160900 AAATGTATATTAAAA TGGGCAATTACCAATGA ATAA TCATTGGTAATTGCCCA TTTAAACGTTAACTA TERM 2834 2160937 - 2160900 - R 100 -23.1 -4.37534 | opp_overlap 2160900 AAATGTATATTAAAA TGGGCAATTACCAATGA ATAA TCATTGGTAATTGCCCA TTTAAACGTTAACTA mutT 2161345 - 2160962 - | MutT/nudix family protein CLL_A2066 2161946 - 2161491 - | hypothetical protein CLL_A2067 2162580 - 2161921 - | hypothetical protein TERM 2835 2162714 - 2162690 - R 76 -2.2 -5.82036 | overlap 2162692 2162693 ATAACAAATAAAAAA CACCAGTACT TATTT AATACTGATA CTTTTGTGATTTTTT CLL_A2068 2163125 - 2162745 - | glyoxalase I CLL_A2069 2164137 - 2163379 - | N- phage replisome organiser TERM 2836 2164433 - 2164410 - R 78 -4.6 -5.60864 | TAGATAGTAAAAAAA CACCAGCATA TTTT TACACTGATG TTCTTCATATTATTT CLL_A2070 2165223 - 2164555 - | putative cell wall binding repeat domain protein CLL_A2071 2165539 - 2165817 + | hypothetical protein TERM 2837 2165965 - 2166005 + F 100 -10.8 -5.63517 | TGTATTTTAAATTTG GATGATTATTGTTACTTT CAGTT GGAGTAATAATAATCATC TTTTTTATTTAAGCC CLL_A2072 2166095 - 2166757 + | putative fibronectin-binding protein TERM 2838 2166824 - 2166857 + T 80 -6.8 -4.97824 | opp_overlap 2166815 2166814 2166836, overlap 2166826 ATAAACTAGACTTTT AAGCCTAAAGTACC TTAAAT GATACTTTAGGCTA TTTTCTTTAAATTTT TERM 2839 2166826 - 2166855 + T 86 -9.4 -4.08189 | opp_overlap 2166815 2166814 2166836, overlap 2166824 AAACTAGACTTTTAA GCCTAAAGTACC TTAAAT GATACTTTAGGC TATTTTCTTTAAATT CLL_A2073 2167920 - 2166871 - | hypothetical protein CLL_A2074 2169018 - 2168317 - | hypothetical protein CLL_A2075 2169550 - 2169011 - | RNA polymerase sigma-70 factor TERM 2840 2169754 - 2169718 - R 79 -3.8 -5.67063 | opp_overlap 2169720, overlap 2169720 TGTATTATAAAAAAA TAGTGATAACACCAAA TTCAT TTTGACGCTATCACCT TTAAACTATTTAGAA TERM 2841 2169752 - 2169720 - R 82 -8.6 -4.47611 | opp_overlap 2169720, overlap 2169718 TATTATAAAAAAATA GTGATAACACCAAA TTCAT TTTGACGCTATCAC CTTTAAACTATTTAG CLL_A2076 2171668 - 2169992 - | hypothetical protein TERM 2842 2171202 - 2171192 - G 75 -5.4 -4.99035 | opp_overlap 2171192 GCATTGAGATAAAAA CTTC AAT GAAG TTATATAAAGTCCGT TERM 2843 2171834 - 2171871 + r 100 -10.2 -5.17744 | opp_overlap 2171834 AAACTGCACTAAAAA TGCTAATAAAACTTAA ACTTAA TTAAGCTTTATTAGCA TTTTTCTTAATCTAT TERM 2844 2171871 - 2171834 - R 100 -12.4 -4.75404 | opp_overlap 2171834 AAACTGCACTAAAAA TGCTAATAAAACTTAA ACTTAA TTAAGCTTTATTAGCA TTTTTCTTAATCTAT CLL_A2077 2172389 - 2171916 - | hypothetical protein CLL_A2078 2172568 - 2172422 - | hypothetical protein TERM 2845 2172582 - 2172624 + r 100 -16.7 -2.94705 | opp_overlap 2172586 2172590, overlap 2172586 2172590 ATCAACATTTTACCA TAAACAAAGACTAGAAATC TTACT GAATTCTAGTCTTTGTTTA TATAATTAAGTTATC TERM 2846 2172620 - 2172586 - R 100 -13.1 -3.97388 | opp_overlap 2172582 2172586 2172590, overlap 2172590 ACATTTTACCATAAA CAAAGACTAGAAATC TTACT GAATTCTAGTCTTTG TTTATATAATTAAGT TERM 2847 2172586 - 2172620 + r 100 -13.1 -4.13872 | opp_overlap 2172586 2172590, overlap 2172582 2172590 ACATTTTACCATAAA CAAAGACTAGAAATC TTACT GAATTCTAGTCTTTG TTTATATAATTAAGT TERM 2848 2172590 - 2172616 + r 85 -8.1 -4.64952 | opp_overlap 2172586 2172590, overlap 2172586 2172582 TTTACCATAAACAAA GACTAGAAATC TTACT GAATTCTAGTC TTTGTTTATATAATT TERM 2849 2172616 - 2172590 - R 85 -8.1 -4.59342 | opp_overlap 2172590 2172586 2172582, overlap 2172586 TTTACCATAAACAAA GACTAGAAATC TTACT GAATTCTAGTC TTTGTTTATATAATT CLL_A2079 2175147 - 2172658 - | hypothetical protein TERM 2850 2174570 - 2174584 + g 70 -5.8 -4.40237 | opp_overlap 2174570 2174572, overlap 2174557 GTTATGAAATAATCA TATATC TTA GATATA TTTTGATCTGTCATC TERM 2851 2175308 - 2175261 - R 100 -13.2 -4.44915 | opp_overlap 2175264, overlap 2175249 2175264 2175299 TAATTATTTATAAAA CAATAGACTATCTTAAAATATA AATT TACATTTTAAGATAGCCTATTT GCTATAATTTATTAT TERM 2852 2175264 - 2175305 + r 95 -10.5 -3.91689 | opp_overlap 2175261 2175264 2175299 TTATTTATAAAACAA TAGACTATCTTAAAATATA AATT TACATTTTAAGATAGCCTA TTTGCTATAATTTAT TERM 2853 2175305 - 2175264 - R 100 -14.9 -4.33182 | opp_overlap 2175264, overlap 2175261 2175299 TTATTTATAAAACAA TAGACTATCTTAAAATATA AATT TACATTTTAAGATAGCCTA TTTGCTATAATTTAT CLL_A2080 2175861 - 2175499 - | putative type I restriction-modification enzyme, S subunit, EcoA family TERM 2854 2176044 - 2176014 - R 100 -13.4 -3.90112 | opp_overlap 2176023, overlap 2176015 2176017 CTGTTCCCAAGCAAA TGAGGGAAAGTGAA TAC CTCACTTTCCCTCT AACAACAAATTTAAA TERM 2855 2176043 - 2176015 - R 100 -16.9 -2.93853 | opp_overlap 2176023, overlap 2176014 2176017 TGTTCCCAAGCAAAT GAGGGAAAGTGAA TAC CTCACTTTCCCTC TAACAACAAATTTAA TERM 2856 2176041 - 2176017 - R 100 -13.7 -3.02166 | opp_overlap 2176023, overlap 2176015 2176014 TTCCCAAGCAAATGA GGGAAAGTGAA TAC CTCACTTTCCC TCTAACAACAAATTT hsdM 2177644 - 2176055 - | type I restriction-modification system, M subunit TERM 2857 2176260 - 2176277 + g 73 -7.7 -3.74615 | overlap 2176249 AAATGAGCATACTTA GGAGCGT CTTT ACGTTCC TTATATGTCTTTATG CLL_A2082 2178951 - 2177683 - | Sau1hsdS1 CLL_A2083 2182237 - 2179028 - | type I site-specific restriction-modification system, R TERM 2858 2181748 - 2181767 + g 80 -5.7 -5.09259 | opp_overlap 2181748 AACCATTAATAAGAA GTGTCGT ATCAAA ACGACGC TTTTGTTTTCCAGTG CLL_A2084 2182809 - 2182234 - | type I restriction enzyme, specificity subunit TERM 2859 2182912 - 2182893 - R 78 -6.6 -4.81083 | opp_overlap 2182893 2182887 TGCAATTATTAAAAA TGTAATTT TAGA AAATTACA TTTCAATTATTTCTA TERM 2860 2183086 - 2183057 - R 100 -12.3 -4.25873 | opp_overlap 2183063, overlap 2183063 TTTCTACAAAAAACA CAAAAAGTCCCTG AAAT CAGGGACTTTCTA TTGTATCAAATTCTA TERM 2861 2183080 - 2183063 - R 100 -11.3 -5.41787 | opp_overlap 2183063, overlap 2183057 CAAAAAACACAAAAA GTCCCTG AAAT CAGGGAC TTTCTATTGTATCAA TERM 2862 2183063 - 2183080 + r 100 -11.3 -4.31164 | opp_overlap 2183057 2183063 CAAAAAACACAAAAA GTCCCTG AAAT CAGGGAC TTTCTATTGTATCAA CLL_A2085 2184352 - 2183186 - | hypothetical protein TERM 2863 2184452 - 2184425 - H 77 -3.4 -5.71983 | opp_overlap 2184428, overlap 2184428 TTAATTATAAAAAAA TAAGAGCCTGAC ATTA ATCAAGCTCCTT CATATTCTTATTTAC TERM 2864 2184449 - 2184428 - H 81 -7.3 -4.9041 | opp_overlap 2184428, overlap 2184425 ATTATAAAAAAATAA GAGCCTGAC ATTA ATCAAGCTC CTTCATATTCTTATT TERM 2865 2185035 - 2185046 + G 84 -5.8 -5.33331 | opp_overlap 2185025 ACAATTAAAAAGGTT GCCT TGTC AGGC TTTTTGTTATCTTTA CLL_A2086 2184624 - 2185298 + | VanZF CLL_A2087 2185566 - 2185390 - | hypothetical protein TERM 2866 2185633 - 2185588 - R 100 -18.2 -4.07687 | opp_overlap 2185598 ACTTTCCTCTCAAAA TGTACTTAAATGTAATATTT CACCAT AAATATTACATTTAAGTACA AAAATAAGAGCCTAT TERM 2867 2185661 - 2185641 - R 77 -6.9 -4.58563 | overlap 2185638 TAAGTACAAAAATAA GAGCCTATA TTA CATAGACTC CTCTTCATAAATAAT CLL_A2088 2186765 - 2185704 - | hypothetical protein TERM 2868 2186257 - 2186269 + g 82 -2.7 -6.04419 | ACATAGCAATCATCA TAAGC TAA GTTTA TTTTTTTCTTGTTTT TERM 2869 2186902 - 2186875 - R 70 -2.7 -5.47399 | overlap 2186878 TTAACTTCAAAAAAA TAAGAGCCTGA AATTAA TCAAGCTCCTT CGCATTTTTATCTAA TERM 2870 2186899 - 2186878 - R 78 -6.6 -4.80853 | overlap 2186875 ACTTCAAAAAAATAA GAGCCTGA AATTAA TCAAGCTC CTTCGCATTTTTATC CLL_A2089 2188411 - 2186948 - | putative beta-lactamase CLL_A2090 2188595 - 2188464 - | hypothetical protein CLL_A2091 2188787 - 2188650 - | hypothetical protein TERM 2871 2188884 - 2188857 - R 73 -2.7 -5.67063 | overlap 2188860 TTTATTATAAAAAAA TAAGAGCCTGA AATTAA TCAAGCTCCTT CGCATTTTTAGTGAA TERM 2872 2188881 - 2188860 - R 78 -6.6 -4.9041 | overlap 2188857 ATTATAAAAAAATAA GAGCCTGA AATTAA TCAAGCTC CTTCGCATTTTTAGT TERM 2873 2188963 - 2189021 + r 72 -8.6 -3.25864 | opp_overlap 2188963 2188968, overlap 2188964 2188966 CTCCTAAATAAAACA TTGAATCTTATTATAACAGCATTAAA ATATTCC TTCAATGCTGTTATAATAAGATATAC ATTCTTTTCTTGCAT TERM 2874 2189021 - 2188963 - R 86 -9.3 -4.05678 | opp_overlap 2188963 2188964 2188966, overlap 2188968 CTCCTAAATAAAACA TTGAATCTTATTATAACAGCATTAAAA TATTC CTTCAATGCTGTTATAATAAGATATAC ATTCTTTTCTTGCAT TERM 2875 2188964 - 2189022 + r 82 -8.1 -4.44914 | gap 2, opp_overlap 2188963 2188968, overlap 2188963 2188966 TCCTAAATAAAACAT TG-A-ATCTTATTATAACAGCATTAAA ATATTCC TTCAATGCTGTTATAATAAGATATACA TTCTTTTCTTGCATC TERM 2876 2188966 - 2189018 + r 89 -12.5 -2.79659 | opp_overlap 2188963 2188968, overlap 2188963 2188964 CTAAATAAAACATTG AATCTTATTATAACAGCATTAAA ATATTCC TTCAATGCTGTTATAATAAGATA TACATTCTTTTCTTG TERM 2877 2189016 - 2188968 - R 100 -18 -3.33483 | opp_overlap 2188966 2188963 2188964, overlap 2188963 AAATAAAACATTGAA TCTTATTATAACAGCATTAAAA TATTC CTTCAATGCTGTTATAATAAGA TATACATTCTTTTCT CLL_A2092 2189440 - 2189138 - | hypothetical protein CLL_A2093 2189794 - 2189492 - | PTS system, Lactose/Cellobiose specific IIA subunit TERM 2878 2189771 - 2189781 + g 71 -2.6 -5.52096 | TCCACTGTGTGATAT TATT TCA AATA TTTTTTCTTCCATTT CLL_A2094 2191132 - 2189819 - | 6-phospho-beta-glucosidase TERM 2879 2190039 - 2190049 + g 70 -6.8 -3.94954 | CCTGTTAATGCTAAT GGTG TTG CACC TCTTTTATCTATTAA TERM 2880 2191191 - 2191160 - R 91 -10.4 -3.76775 | opp_overlap 2191160 TTTAATATATTTAAA TACAGTTTTGATTT CAAT ATATCAAAACTGTA TTTTTTTAATTAGTC TERM 2881 2191160 - 2191191 + r 100 -10.4 -5.65513 | opp_overlap 2191160 TTTAATATATTTAAA TACAGTTTTGATTT CAAT ATATCAAAACTGTA TTTTTTTAATTAGTC CLL_A2095 2192482 - 2191232 - | PTS system, lactose/cellobiose family IIC component CLL_A2096 2192838 - 2192530 - | PTS system, diacetylchitobiose-specific IIB component TERM 2882 2192878 - 2192897 + r 72 -5.2 -5.00027 | opp_overlap 2192886 TATTTATTTGTATTG TTATTAAA TATT TTTAATAA TTTTATATTTTTGCT TERM 2883 2193073 - 2193088 + r 73 -3.4 -5.59879 | TTATATATTGTGTGG TAATTT TTGT AAATTA TTTTTTATATTTCTA TERM 2884 2193257 - 2193209 - R 72 -4 -5.43621 | gap 1 ATAAATTACAAAAAA GAGCCTACATTATGA-ACTTTCT CCTT AGAGTGTGTCATTACGTAGACTC TTCTTCATATCTCAT CLL_A2097 2194093 - 2193383 - | glycerol uptake facilitator protein TERM 2885 2194188 - 2194163 - R 100 -14.9 -3.67141 | opp_overlap 2194155 2194166, overlap 2194152 2194166 ATAATTTCATTTAAA GAACCCCTTTA AATG TAAAGGGGTTC TAATAATAGTTATGT TERM 2886 2194185 - 2194166 - R 95 -10.8 -3.96483 | opp_overlap 2194155 2194166, overlap 2194152 2194163 ATTTCATTTAAAGAA CCCCTTTA AATG TAAAGGGG TTCTAATAATAGTTA TERM 2887 2194166 - 2194185 + r 90 -10.8 -3.45737 | opp_overlap 2194152 2194166 2194163, overlap 2194155 ATTTCATTTAAAGAA CCCCTTTA AATG TAAAGGGG TTCTAATAATAGTTA CLL_A2098 2195383 - 2194226 - | 1,3-propanediol dehydrogenase CLL_A2099 2195941 - 2195516 - | DhaG protein CLL_A2100 2196473 - 2195961 - | ATP:cob(I)alamin adenosyltransferase CLL_A2101 2196854 - 2196495 - | glycerol dehydratase reactivation factor, small subunit CLL_A2102 2198692 - 2196854 - | glycerol dehydratase reactivation factor large subunit TERM 2888 2197927 - 2197938 + g 80 -5.8 -5.15167 | opp_overlap 2197926 TTTTTTCTTGAACAT CACC CTTA GGTG TTTTTATTACTACTG CLL_A2103 2199142 - 2198720 - | coenzyme B12-dependent glycerol dehydratase, small subunit CLL_A2104 2199739 - 2199164 - | propanediol utilization: dehydratase, medium subunit CLL_A2105 2201422 - 2199758 - | glycerol dehydratase large subunit CLL_A2106 2202468 - 2201731 - | DNA-bindng response regulator, AraC family TERM 2889 2202119 - 2202086 - G 85 -9.9 -3.48593 | opp_overlap 2202087, overlap 2202087 2202089 GATTTTTCCACATAA GTATCTTTGTTAATT TTTA AATTAACAAAGATAT TATTTATGGCATCTA TERM 2890 2202118 - 2202087 - G 100 -13.4 -2.68942 | opp_overlap 2202087, overlap 2202086 2202089 ATTTTTCCACATAAG TATCTTTGTTAATT TTTA AATTAACAAAGATA TTATTTATGGCATCT TERM 2891 2202087 - 2202118 + g 100 -13.4 -4.08279 | opp_overlap 2202087 2202086 2202089 ATTTTTCCACATAAG TATCTTTGTTAATT TTTA AATTAACAAAGATA TTATTTATGGCATCT TERM 2892 2202116 - 2202089 - G 89 -11.6 -2.88822 | opp_overlap 2202087, overlap 2202087 2202086 TTTTCCACATAAGTA TCTTTGTTAATT TTTA AATTAACAAAGA TATTATTTATGGCAT CLL_A2107 2203725 - 2202484 - | sensor histidine kinase CLL_A2108 2204063 - 2207092 + | hypothetical protein TERM 2893 2207104 - 2207145 + T 100 -11.9 -4.74801 | opp_overlap 2207110, overlap 2207107 ATAGTAGTTTTGTTT TAAGAATATTACTGGAAAT TTTA AGTTCCAGTAATATTCTTC TTTTTAATAAAATTG TERM 2894 2207107 - 2207142 + T 100 -13.6 -4.47707 | opp_overlap 2207110, overlap 2207104 GTAGTTTTGTTTTAA GAATATTACTGGAAAT TTTA AGTTCCAGTAATATTC TTCTTTTTAATAAAA TERM 2895 2207139 - 2207110 - T 83 -9.5 -3.61398 | opp_overlap 2207107 2207104 GTTTTGTTTTAAGAA TATTACTGGAAAT TTTA AGTTCCAGTAATA TTCTTCTTTTTAATA CLL_A2109 2208364 - 2207222 - | divergent AAA domain family CLL_A2110 2208813 - 2208526 - | DNA polymerase, beta domain protein region CLL_A2111 2209256 - 2208819 - | putative nucleotidyltransferase substrate binding protein, family CLL_A2112 2209432 - 2210268 + | 2,5-diketo-d-gluconic acid reductase a TERM 2896 2210421 - 2210376 - T 100 -8.6 -6.11392 | opp_overlap 2210376 2210373 AAACAAATAAAAAAA CTCTATATGAGTAGATTATT TTTTAT AGTTATCTACTCATATAAAG TCAATTTTACAAATG CLL_A2113 2211237 - 2210452 - | ferrichrome transport ATP-binding protein FhuC CLL_A2114 2212288 - 2211272 - | ferrichrome transport system permease protein FhuG TERM 2897 2211969 - 2211933 - G 73 -9.1 -2.62735 | overlap 2211938 ATATTGCTTATACCA TCATATATATTTCCATT CAT AATATAAATATATATGA CAACAAATAATGCTG CLL_A2115 2213302 - 2212289 - | ferrichrome transport system permease protein FhuB TERM 2898 2213376 - 2213341 - R 79 -9.1 -3.53019 | overlap 2213339 CTATAAATTCAAATA GTAGGTGACAAAAGG GTTGCT CCTCTCACCACCTAC TCTATATACTTGTAT CLL_A2116 2214332 - 2213391 - | iron compound ABC transporter, iron compound-binding protein TERM 2899 2214375 - 2214387 + r 70 -4.9 -4.79955 | TTTTCTTTTGTTATT GATAA TCA TTATC TTTTGTTGTGAATAT TERM 2900 2214460 - 2214447 - R 76 -2.4 -5.98781 | TATAATTAAAAAAAA TTGG ATATTG CCAA ATGTATCCACTGTAA TERM 2901 2214480 - 2214507 + r 100 -14.4 -3.43288 | opp_overlap 2214480 ATCCACTGTAAAAAA GATGTTGATATG AATT CATATCAACATC TTCTAGTAAACTTTA TERM 2902 2214507 - 2214480 - R 100 -14.4 -5.05782 | opp_overlap 2214480 ATCCACTGTAAAAAA GATGTTGATATG AATT CATATCAACATC TTCTAGTAAACTTTA CLL_A2117 2215587 - 2214622 - | dihydrouridine synthase family protein CLL_A2118 2216487 - 2215729 - | phospholipase C zinc-binding CLL_A2119 2216659 - 2217123 + | transcription elongation factor GreA TERM 2903 2217193 - 2217211 + F 72 -6.2 -4.39568 | opp_overlap 2217192 2217193 2217197 2217202, overlap 2217184 2217197 ATTAGTTATATTAAT TAAATATA CTA TATATTTA TTTTAATATATAAAT TERM 2904 2217288 - 2217248 - f 82 -11.2 -2.50791 | opp_overlap 2217249 2217254, overlap 2217247 2217245 2217256 TACTTATAAAAGTAT TGTAAGCAGCCACATGTC TAATT GACAGGTGGCTGTTTACT TGTATTGTCTTATAT TERM 2905 2217249 - 2217287 + F 100 -16.9 -3.85527 | opp_overlap 2217248 2217247 2217245 2217256, overlap 2217254 ACTTATAAAAGTATT GTAAGCAGCCACATGTC TAATT GACAGGTGGCTGTTTAC TTGTATTGTCTTATA TERM 2906 2217254 - 2217282 + F 100 -13.2 -4.09827 | opp_overlap 2217248 2217247 2217245 2217256, overlap 2217249 TAAAAGTATTGTAAG CAGCCACATGTC TAATT GACAGGTGGCTG TTTACTTGTATTGTC TERM 2907 2217280 - 2217256 - f 79 -10 -2.74756 | opp_overlap 2217254 2217249, overlap 2217248 2217247 2217245 AAAGTATTGTAAGCA GCCACATGTC TAATT GACAGGTGGC TGTTTACTTGTATTG CLL_A2120 2217414 - 2217959 + | hypothetical protein CLL_A2121 2218117 - 2218788 + | hypothetical protein TERM 2908 2218813 - 2218792 - T 100 -9.5 -5.06816 | opp_overlap 2218792 ATTTTTCAATAAAAA GCTACTGCA AAAT TACAGTAGC TTTTTCCAATAAATT TERM 2909 2218792 - 2218813 + T 79 -7.3 -4.63184 | opp_overlap 2218792 ATTTTTCAATAAAAA GCTACTGCA AAAT TACAGTAGC TTTTTCCAATAAATT CLL_A2122 2220088 - 2218868 - | FliB family protein CLL_A2123 2220591 - 2220112 - | hypothetical protein TERM 2910 2220684 - 2220653 - R 95 -8.2 -5.24799 | opp_overlap 2220653 GCATAAATATAAAAA GTAGCACTAATATT TCTA AGTATTAATGCTAC TTTACTATCTATATT TERM 2911 2220653 - 2220684 + r 78 -8.2 -3.92869 | opp_overlap 2220653 GCATAAATATAAAAA GTAGCACTAATATT TCTA AGTATTAATGCTAC TTTACTATCTATATT CLL_A2124 2222499 - 2220811 - | putative sucrose phosphorylase CLL_A2125 2225127 - 2222524 - | glycosyl hydrolase, family 38 TERM 2912 2223770 - 2223784 + g 81 -8.6 -4.22338 | CTTCTATAATAACCT GGAAGT TCA ACTTCC TTTTCACCTTCTGCT TERM 2913 2224857 - 2224832 - G 86 -10.7 -2.91467 | opp_overlap 2224822 2224831 2224830 2224834, overlap 2224822 2224834 AAATTTCTAACTATA GATTCTTTATT TACC AATAAAGAATC AGTTTGTGTATACCA TERM 2914 2225099 - 2225113 + g 78 -2.8 -5.89827 | TCCCAATGAGAATGT GGTACA ACA TATACC TTTTTTTTAATCATT TERM 2915 2225157 - 2225196 + r 77 -3.1 -5.66868 | gap 1, opp_overlap 2225159 2225160 2225163 2225170, overlap 2225159 2225160 AATATCTTATTAATG AAG-GAACTAAAAACTAT CATAA ATAGCTTTTAGTTCTCTA TTTTTTTAATTAATT TERM 2916 2225193 - 2225159 - R 77 -8.8 -3.40371 | opp_overlap 2225159 2225157 2225160, overlap 2225160 2225163 2225170 TATCTTATTAATGAA GGAACTAAAAACTATC ATA AATAGCTTTTAGTTCT CTATTTTTTTAATTA TERM 2917 2225192 - 2225160 - R 88 -12.3 -2.63901 | opp_overlap 2225159 2225157 2225160, overlap 2225159 2225163 2225170 ATCTTATTAATGAAG GAACTAAAAACTATC ATA AATAGCTTTTAGTTC TCTATTTTTTTAATT TERM 2918 2225160 - 2225192 + r 84 -9.4 -3.80651 | opp_overlap 2225160 2225159 2225163 2225170, overlap 2225159 2225157 ATCTTATTAATGAAG GAACTAAAAACTAT CATAA ATAGCTTTTAGTTC TCTATTTTTTTAATT TERM 2919 2225189 - 2225163 - R 74 -8.2 -3.46824 | opp_overlap 2225160 2225159 2225157, overlap 2225160 2225159 2225170 TTATTAATGAAGGAA CTAAAAACTATC ATA AATAGCTTTTAG TTCTCTATTTTTTTA CLL_A2126 2227159 - 2225210 - | PTS system, fructose-specific component family TERM 2920 2227251 - 2227269 + H 70 -4.7 -4.80167 | ATTTTTTTAATTTTG TTATACT ATAAA AGTATAA TTTTACTTTTTAATG CLL_A2127 2227344 - 2228087 + | phosphosugar-binding protein TERM 2921 2228105 - 2228131 + T 100 -16.8 -3.36452 | opp_overlap 2228105, overlap 2228108 TACCCATAAATAAAA TAAGCTGTTGCA TAT TGCAACAGCTTA TTCATATTGGAGGAT TERM 2922 2228131 - 2228105 - T 100 -16.8 -5.0065 | opp_overlap 2228105 2228108 TACCCATAAATAAAA TAAGCTGTTGCA TAT TGCAACAGCTTA TTCATATTGGAGGAT TERM 2923 2228108 - 2228128 + T 100 -14.1 -3.82084 | opp_overlap 2228105, overlap 2228105 CCATAAATAAAATAA GCTGTTGCA TAT TGCAACAGC TTATTCATATTGGAG CLL_A2128 2228853 - 2228209 - | chloramphenicol O-acetyltransferase CLL_A2129 2229153 - 2229016 - | hypothetical protein CLL_A2130 2230042 - 2229227 - | alpha/beta superfamily hydrolase TERM 2924 2230183 - 2230195 + r 70 -7.7 -3.30159 | TCCATAATTTTCACT TCCAC TTG GTGGA TTATGAAGCAGTTAG CLL_A2131 2230916 - 2230302 - | hypothetical protein CLL_A2132 2231958 - 2231293 - | 3-oxoacid CoA-transferase, B subunit CLL_A2133 2232612 - 2231959 - | 3-oxoacid CoA-transferase, A subunit CLL_A2134 2234101 - 2232698 - | ethanolamine utilization protein EutE TERM 2925 2234794 - 2234760 - R 100 -12.5 -4.93696 | opp_overlap 2234760 2234763 TCTAAATACTAAAAA GAATATGATCTCTAT ACTAA ATAGAAATCATATTC TTAACTTAGATTTTT TERM 2926 2234760 - 2234794 + r 87 -10.3 -3.24122 | opp_overlap 2234760, overlap 2234763 TCTAAATACTAAAAA GAATATGATCTCTAT ACTAA ATAGAAATCATATTC TTAACTTAGATTTTT CLL_A2135 2235599 - 2234859 - | putative acetoacetate decarboxylase CLL_A2136 2235983 - 2235849 - | hypothetical protein CLL_A2137 2236394 - 2235999 - | hypothetical protein CLL_A2138 2237037 - 2236534 - | isochorismatase hydrolase CLL_A2139 2237602 - 2237090 - | protein YqkA TERM 2927 2237310 - 2237298 - G 70 -6.3 -4.19483 | opp_overlap 2237308 CCACATACATATAAA TGATG TAC CATCA AATGTGGTTTATTTG CLL_A2140 2238164 - 2237637 - | acetyltransferase, gnat family CLL_A2141 2238614 - 2238279 - | hypothetical protein CLL_A2142 2238842 - 2238696 - | hypothetical protein CLL_A2143 2239068 - 2238811 - | hypothetical protein CLL_A2144 2239573 - 2239427 - | hypothetical protein TERM 2928 2239490 - 2239455 - G 100 -16.6 -3.78233 | opp_overlap 2239455 2239459, overlap 2239459 ATATTAATATTTAAA TAAACCTTATCATTTA ATAC TAAATGATAAGGTTTA TTCTTAATGCCCATT TERM 2929 2239455 - 2239490 + g 100 -16.6 -3.72592 | opp_overlap 2239455 2239459, overlap 2239459 ATATTAATATTTAAA TAAACCTTATCATTTA ATAC TAAATGATAAGGTTTA TTCTTAATGCCCATT TERM 2930 2239459 - 2239486 + g 100 -13 -4.48713 | opp_overlap 2239455 2239459, overlap 2239455 TAATATTTAAATAAA CCTTATCATTTA ATAC TAAATGATAAGG TTTATTCTTAATGCC TERM 2931 2239486 - 2239459 - G 100 -13 -4.49906 | opp_overlap 2239459 2239455, overlap 2239455 TAATATTTAAATAAA CCTTATCATTTA ATAC TAAATGATAAGG TTTATTCTTAATGCC CLL_A2145 2240028 - 2239567 - | spermine/spermidine acetyltransferase CLL_A2146 2240170 - 2240051 - | hypothetical protein CLL_A2147 2240779 - 2240267 - | acetyltransferase, gnat family CLL_A2148 2241288 - 2241022 - | hypothetical protein TERM 2932 2241375 - 2241350 - R 73 -5.5 -4.74539 | opp_overlap 2241350 AACAATTTAATAAAA TTCCATTTCGA TTAT TCAAATTGGAA TTTATAACTTATCTT CLL_A2149 2241863 - 2241384 - | hypothetical protein CLL_A2150 2242243 - 2241914 - | hypothetical protein CLL_A2151 2242630 - 2242295 - | hypothetical protein TERM 2933 2242759 - 2242721 - R 75 -5.6 -4.96848 | overlap 2242727 GTCTCTATACAAAAA TAAAAAGTCATAACAATT AAA AATCATTACAACTCTTTA TATTTCTAATCAACT TERM 2934 2242753 - 2242727 - R 73 -2.4 -5.71295 | overlap 2242721 ATACAAAAATAAAAA GTCATAACAATT AAA AATCATTACAAC TCTTTATATTTCTAA CLL_A2152 2243715 - 2242843 - | phosphoesterase TERM 2935 2242906 - 2242896 - G 73 -5.4 -4.72272 | CTGGTCTATTAAAAA TCCT TAA AGGA CAAATACTATTACCC CLL_A2153 2243920 - 2243765 - | hypothetical protein CLL_A2154 2245923 - 2244196 - | peptidase, M56 family protein CLL_A2155 2246312 - 2245929 - | penicillinase repressor TERM 2936 2245979 - 2245993 + g 70 -5 -4.78077 | overlap 2245981 TCTTTAATTCTTCTA TGTCTG TTT CAGATA TTTCTTTTGATTCAA TERM 2937 2246185 - 2246204 + g 72 -5.8 -4.50859 | gap 1 ATTAAGCTCTTTATT GTAG-ATGG TTT CCATTCTAC TTTATCTTTTAGTTC TERM 2938 2246585 - 2246549 - R 90 -6.1 -5.8901 | opp_overlap 2246549 ATACAAAATAAAAAA TACCGCAAATTCATA AGAAAAA TATGAATTTCCAGTA TTTATAGTTGTTACA CLL_A2156 2247928 - 2247023 - | hypothetical protein CLL_A2157 2248218 - 2248427 + | hypothetical protein CLL_A2158 2248420 - 2248887 + | hypothetical protein TERM 2939 2248893 - 2248928 + T 100 -10 -5.3671 | gap 1, opp_overlap 2248893 TGCTAATTAAAAAAA CATAAAAGGACGGTAAT TAA ATTCCC-TCCTTTTATG TTTTTTAATTATATT TERM 2940 2248928 - 2248893 - T 100 -10 -5.63103 | gap 1, opp_overlap 2248893 TGCTAATTAAAAAAA CATAAAAGGACGGTAAT TAA ATTCCC-TCCTTTTATG TTTTTTAATTATATT CLL_A2159 2249117 - 2249001 - | hypothetical protein CLL_A2160 2249599 - 2249078 - | hydrolase, isochorismatase family CLL_A2161 2249820 - 2249647 - | acetyltransferase CLL_A2162 2250158 - 2249808 - | acetyltransferase, gnat family CLL_A2163 2251317 - 2250250 - | putative acetyltransferase CLL_A2164 2252139 - 2251378 - | ferredoxin TERM 2941 2251746 - 2251760 + g 90 -3.6 -5.9663 | opp_overlap 2251740 2251748, overlap 2251740 2251748 GCTGAACAACTAATT TATTAG CTT CTAATG TTTTTTTTAATGTTT CLL_A2165 2252819 - 2252226 - | maltose O-acetyltransferase CLL_A2166 2253778 - 2253143 - | chloramphenicol O-acetyltransferase CLL_A2167 2253932 - 2253810 - | hypothetical protein CLL_A2168 2254556 - 2254125 - | putative carboxymuconolactone decarboxylase CLL_A2169 2255299 - 2254592 - | alpha/beta hydrolase CLL_A2170 2255916 - 2255416 - | topology modulation protein TERM 2942 2255476 - 2255492 + g 76 -8.1 -3.85114 | AACCATTTTATCTTT GTATTTG TTG CAAATAC TTTGGTATCCCATTT CLL_A2171 2258071 - 2256140 - | hypothetical protein TERM 2943 2257330 - 2257353 + g 78 -9 -3.31537 | opp_overlap 2257330 2257333 2257334, overlap 2257334 CTTTAAAAGCCATAA TAAGTGCTTG ATTA CAAGCATTTA TTGCTGTAGTATCAT TERM 2944 2257334 - 2257349 + g 78 -7.6 -4.30177 | opp_overlap 2257333 2257330 2257334, overlap 2257330 AAAAGCCATAATAAG TGCTTG ATTA CAAGCA TTTATTGCTGTAGTA TERM 2945 2258371 - 2258391 + r 74 -6.3 -4.67048 | ATTTTATATTTCTTT TTCATTAAG AAC TTTAATGAA TTTATTTTCAGATAA TERM 2946 2258451 - 2258496 + r 100 -15.9 -4.06491 | gap 1, opp_overlap 2258444 2258443 2258458, overlap 2258452 AGAAAAAGCTATATG T-TGTAAATGGTGATAGTGC TAAAAAT GCACTATCACCATTTACATA TTTGTGTACAGTTAA TERM 2947 2258452 - 2258494 + r 100 -21 -3.62348 | opp_overlap 2258444 2258443 2258458, overlap 2258451 GAAAAAGCTATATGT TGTAAATGGTGATAGTGC TAAAAAT GCACTATCACCATTTACA TATTTGTGTACAGTT TERM 2948 2258488 - 2258458 - R 100 -14.2 -3.56643 | opp_overlap 2258452 2258451, overlap 2258444 2258443 GCTATATGTTGTAAA TGGTGATAGTGC TAAAAAT GCACTATCACCA TTTACATATTTGTGT CLL_A2172 2260644 - 2258554 - | cell surface protein CLL_A2173 2261489 - 2260719 - | hypothetical protein TERM 2949 2261903 - 2261884 - R 75 -5.8 -4.94147 | opp_overlap 2261879 2261884 2261889, overlap 2261879 2261889 AAGAATATAATAAAA CAAAAGGT AGAG ACCTTTTA TTTAATCTCTACCTT TERM 2950 2261916 - 2261889 - R 76 -4.2 -5.31091 | opp_overlap 2261884 2261879 2261889, overlap 2261884 2261879 TATAATAAAACAAAA GGTAGAGACC TTTTATTT AATCTCTACC TTTCATTGAACGACT CLL_A2174 2264063 - 2261946 - | starch binding domain protein CLL_A2175 2265681 - 2264173 - | starch binding domain protein TERM 2951 2265994 - 2265950 - R 73 -3.3 -5.55664 | gap 2 GCATCATCAAAAAAA GATATTTGATGAAAATCTAAT TATTC ACTAGACTTTC--CAAATATC TTTCTATTTTTATTA CLL_A2176 2266845 - 2266300 - | hypothetical protein CLL_A2177 2267063 - 2266911 - | glyoxalase/bleomycin resistance protein/dioxygenase CLL_A2178 2267605 - 2267135 - | spermine/spermidine acetyltransferase CLL_A2179 2268145 - 2267687 - | acetyltransferase, gnat family TERM 2952 2268399 - 2268409 + r 75 -4 -5.48787 | CTGAACATCTAATTT TGAA CAC TTCA TTTTTTGTATATTAT CLL_A2180 2269218 - 2268460 - | hypothetical protein TERM 2953 2268745 - 2268733 - G 73 -7.7 -3.73775 | opp_overlap 2268733 CTTATCTCCATCAAA TGCTG CAA CAGCA AGCATATCTGGATTA TERM 2954 2269090 - 2269070 - G 71 -4.1 -5.03715 | overlap 2269057 AGTATTTTCAAAAAA CATTTATCA TTG TTATAAATG CGCCTACCATCAGTA CLL_A2181 2269764 - 2269258 - | hypothetical protein CLL_A2182 2269947 - 2269795 - | hypothetical protein TERM 2955 2269847 - 2269836 - G 73 -3 -5.42198 | TTCTAAAAAATAAAA CAAT TGCC ATTG TTAAAATTACGCCTT CLL_A2183 2270816 - 2270349 - | hypothetical protein CLL_A2184 2271113 - 2271439 + | hypothetical protein TERM 2956 2271590 - 2271532 - T 100 -23 -5.03994 | opp_overlap 2271548, overlap 2271534 TTTTAGACATAAAAA TACTCCCTTTAAGGTAGACAGATT TTTATTTTTTT AATCTGTCTACCTTAAAGGGAGCA TATCAGAAGAAATGA TERM 2957 2271588 - 2271534 - T 100 -23.4 -4.14422 | opp_overlap 2271548, overlap 2271532 TTAGACATAAAAATA CTCCCTTTAAGGTAGACAGATT TTTATTTTTTT AATCTGTCTACCTTAAAGGGAG CATATCAGAAGAAAT def 2272077 - 2271628 - | peptide deformylase TERM 2958 2271925 - 2271946 + g 70 -5.8 -4.30441 | TAACATGCCTACTTG TGGTGCTG CCAAAC CTGCACCA TTTTCCGTATTATAC CLL_A2186 2272314 - 2272078 - | hypothetical protein CLL_A2187 2272946 - 2272524 - | acetyltransferase, gnat family CLL_A2188 2273761 - 2273219 - | hypothetical protein CLL_A2189 2274390 - 2273824 - | hypothetical protein TERM 2959 2274576 - 2274607 + H 95 -13.4 -3.06815 | opp_overlap 2274581 2274583 TATTATATATTATTA TTAGATATTTAGAT AATT ATCTAAATATCTAA TCTATTGAAAGGAGT CLL_A2190 2274629 - 2274910 + | transcription regulator, ArsR family TERM 2960 2275185 - 2275195 + G 74 -4 -5.22768 | opp_overlap 2275185 ACTATTATTACAAAT GTTA TGG TAAC TTTCTTTTTTATTCT TERM 2961 2275435 - 2275451 + G 71 -3.8 -5.00616 | TATCAGGACTAGCTA TAATGA TAAGT TCATTA TTTTTTGAAGGAAAC CLL_A2191 2274915 - 2275553 + | conserved membrane protein YvaZ TERM 2962 2275596 - 2275569 - f 89 -10.1 -3.54662 | opp_overlap 2275569 CTAAATATACTATAA GGTTCAATTTT TTTAAC AAAATTGAACC TTTTTTTATTTTTTC TERM 2963 2275569 - 2275596 + F 100 -10.1 -6.28401 | opp_overlap 2275569 CTAAATATACTATAA GGTTCAATTTT TTTAAC AAAATTGAACC TTTTTTTATTTTTTC CLL_A2192 2275830 - 2277050 + | GerN TERM 2964 2277089 - 2277032 - T 100 -19.7 -4.64657 | gap 1, opp_overlap 2277033 2277038 2277053, overlap 2277033 2277053 TCAAATCCCTAAAAA TGCTATTACTATAAAATAAAAGCGTGGC TAT GCCACGCTTTTATTTTATAGTA-TACCT TCTTTTTGATATGTT TERM 2965 2277033 - 2277088 + T 100 -23.2 -4.51891 | gap 1, opp_overlap 2277033 2277032 2277053, overlap 2277038 2277053 CAAATCCCTAAAAAT GCTATTACTATAAAATAAAAGCGTGGC TAT GCCACGCTTTTATTTTATAGTA-TACC TTCTTTTTGATATGT TERM 2966 2277088 - 2277033 - T 100 -23.2 -3.38071 | gap 1, opp_overlap 2277033 2277038 2277053, overlap 2277032 2277053 CAAATCCCTAAAAAT GCTATTACTATAAAATAAAAGCGTGGC TAT GCCACGCTTTTATTTTATAGTA-TACC TTCTTTTTGATATGT TERM 2967 2277038 - 2277084 + T 100 -28.6 -2.80514 | opp_overlap 2277033 2277032 2277053, overlap 2277033 2277053 CCCTAAAAATGCTAT TACTATAAAATAAAAGCGTGGC TAT GCCACGCTTTTATTTTATAGTA TACCTTCTTTTTGAT TERM 2968 2277069 - 2277053 - T 100 -13.7 -5.20781 | opp_overlap 2277053 2277038 2277033, overlap 2277033 2277032 TACTATAAAATAAAA GCGTGGC TAT GCCACGC TTTTATTTTATAGTA TERM 2969 2277053 - 2277069 + T 100 -13.7 -5.20781 | opp_overlap 2277033 2277032 2277053, overlap 2277038 2277033 TACTATAAAATAAAA GCGTGGC TAT GCCACGC TTTTATTTTATAGTA CLL_A2193 2277733 - 2277077 - | pentapeptide repeat protein TERM 2970 2277705 - 2277715 + g 100 -5.4 -5.98675 | TTATTATAGTTTAGC CCAA TAC TTGG TTTTTTATTTTTATC CLL_A2194 2278008 - 2277817 - | hypothetical protein TERM 2971 2278302 - 2278273 - R 78 -6.6 -4.84527 | opp_overlap 2278273 TTTATATACTAAAAA GACTAGTTAC TTTATATTTT GTAACTAGTC TTTGAATATTTAAAT CLL_A2195 2280407 - 2278398 - | methyl-accepting chemotaxis protein TERM 2972 2280460 - 2280474 + r 78 -4.4 -5.60864 | opp_overlap 2280460 2280462 GGTTCCCCTTAAAAG TATATT ATG AATATA TTTTTTTAATGTGTA TERM 2973 2280552 - 2280580 + r 93 -9 -4.81685 | opp_overlap 2280552 TAAAATGACACTAAA GGCTAGTTAC TTGTAATTT GTAACTAGCC TTTTTGATACTTACT TERM 2974 2280580 - 2280552 - R 81 -9 -3.92694 | opp_overlap 2280552 TAAAATGACACTAAA GGCTAGTTAC TTGTAATTT GTAACTAGCC TTTTTGATACTTACT CLL_A2196 2281644 - 2280604 - | hypothetical protein TERM 2975 2281418 - 2281388 - G 71 -4.2 -5.03314 | overlap 2281389 TCTATTCCTAAAAAA CTAGCTATATCATT ATT AATTATATAACTAA CCTTTGATAGTGCAG TERM 2976 2281499 - 2281512 + g 83 -6.7 -4.86385 | ACTGCTGCTATCATT CCTCT CTTT AGAGG TTTCTTTTTCGAGAT CLL_A2197 2282203 - 2281649 - | RNA polymerase sigma-70 factor CLL_A2198 2282494 - 2283960 + | polysaccharide biosynthesis protein TERM 2977 2284056 - 2284015 - T 100 -12.7 -4.87008 | opp_overlap 2284020 AATATATAAAATAAA CACTATAAAAAGTAGTC TTATTTTT AACTACTTTTTATAGTG TAACTCAACATTTTT CLL_A2199 2285396 - 2284113 - | hypothetical protein TERM 2978 2284230 - 2284248 + g 71 -7.5 -3.5241 | opp_overlap 2284230 2284228 2284218, overlap 2284228 AAATTCTACAACATA TCCAAGT TCATC ACTTGGA TCTTTATAAAAACTC TERM 2979 2284740 - 2284752 + g 70 -6.3 -4.20074 | overlap 2284732 AGAATGAGGTGAGTC TGATG GCT CATCA TTTTCGAATCTATTT CLL_A2200 2286820 - 2285537 - | hypothetical protein TERM 2980 2287079 - 2287050 - R 100 -6.7 -6.09196 | opp_overlap 2287050 TCTAAAATAAAAAAA TATTACTAGAA TTCACGTT TTCTAGTAATA TTTCTAAAATTAAGA CLL_A2201 2287838 - 2287191 - | FMN-dependent NADH-azoreductase family protein CLL_A2202 2288335 - 2288502 + | hypothetical protein TERM 2981 2288593 - 2288570 - T 75 -8.2 -3.56544 | opp_overlap 2288571, overlap 2288566 2288571 AGGATTAAGAAGTAA CGTGGACAAA TTAA TTTGTCCACT TTTATACGTTCTATT TERM 2982 2288571 - 2288592 + T 100 -11.7 -4.49939 | opp_overlap 2288570 2288566 2288571 GGATTAAGAAGTAAC GTGGACAAA TTAA TTTGTCCAC TTTTATACGTTCTAT TERM 2983 2288592 - 2288571 - T 86 -11.7 -2.73203 | opp_overlap 2288571, overlap 2288570 2288566 GGATTAAGAAGTAAC GTGGACAAA TTAA TTTGTCCAC TTTTATACGTTCTAT CLL_A2203 2289402 - 2288722 - | hypothetical protein CLL_A2204 2290487 - 2289399 - | hypothetical protein TERM 2984 2289427 - 2289457 + g 71 -7.8 -3.51825 | GTCCTCCTTGGATTG TTTCTTGAATATTT ATA AAGTATACAAGAAA TTATAATTAAAATGA CLL_A2205 2291367 - 2290489 - | ABC transporter TERM 2985 2291386 - 2291418 + r 82 -9.4 -3.42078 | opp_overlap 2291391, overlap 2291387 AATCCTCCCAATTGT ATTAAGTGTACTAT TTTAT ATAGTACACTTAAA TTATAATAAACTATA TERM 2986 2291387 - 2291417 + r 90 -12.9 -2.64925 | opp_overlap 2291391, overlap 2291386 ATCCTCCCAATTGTA TTAAGTGTACTAT TTTAT ATAGTACACTTAA ATTATAATAAACTAT TERM 2987 2291413 - 2291391 - R 80 -9.3 -3.18681 | opp_overlap 2291387 2291386 TCCCAATTGTATTAA GTGTACTAT TTTAT ATAGTACAC TTAAATTATAATAAA CLL_A2206 2292986 - 2291625 - | subtilin biosynthesis sensor protein SpaK TERM 2988 2292044 - 2292057 + g 74 -3.9 -5.22039 | TTGACTTTTCCTTTA TTTCA CTTA TGAAA TTTTTTAAATTTACC CLL_A2207 2293636 - 2292974 - | regulatory protein VanR CLL_A2208 2294247 - 2293657 - | putative lipoprotein CLL_A2209 2295167 - 2294409 - | antibiotic transport-associated permease SpaG/mutG TERM 2989 2294738 - 2294726 - G 74 -2.7 -5.56573 | ATAAATAAAGAAAAA TTTGA CTT CCAAA TATAATTAAGGTTAC TERM 2990 2294878 - 2294864 - G 75 -5.8 -4.67038 | CTGTGAAAAGCAAAA TAAGTA CTT TACTTA TAAGACATTTTCCTT CLL_A2210 2295919 - 2295170 - | lantibiotic permease protein SpaE/mutE CLL_A2211 2296626 - 2295922 - | bacitracin transport ATP-binding protein BcrA TERM 2991 2296691 - 2296722 + r 70 -6 -4.29905 | opp_overlap 2296694, overlap 2296688 2296694 TATAAGGAAATAAAA AAAGATTCATCACT AAAA ATTGATGAATCTTA TTATTTTCCTATGAT TERM 2992 2296719 - 2296694 - R 100 -7.7 -6.01187 | opp_overlap 2296691 2296688 2296694 AAGGAAATAAAAAAA GATTCATCACT AAAA ATTGATGAATC TTATTATTTTCCTAT TERM 2993 2296694 - 2296719 + r 78 -7.7 -4.25052 | opp_overlap 2296694, overlap 2296691 2296688 AAGGAAATAAAAAAA GATTCATCACT AAAA ATTGATGAATC TTATTATTTTCCTAT CLL_A2212 2297477 - 2296737 - | hypothetical protein TERM 2994 2297398 - 2297417 + g 75 -3.7 -5.44638 | ATTTTTCCATTTATA TCTATTT TTATAC AAATAGA TTTTCTTTTTCTTCT TERM 2995 2297540 - 2297565 + r 80 -6.3 -5.15167 | opp_overlap 2297540 AATTATAACTAAAAA GTCAGTAAT AATTTTCA ATTACTGAC TTTTTGTTCCTAGTA TERM 2996 2297565 - 2297540 - R 78 -6.3 -4.95876 | opp_overlap 2297540 AATTATAACTAAAAA GTCAGTAAT AATTTTCA ATTACTGAC TTTTTGTTCCTAGTA CLL_A2213 2298158 - 2297676 - | flavodoxin CLL_A2214 2298557 - 2298829 + | hypothetical protein TERM 2997 2298847 - 2298877 + T 100 -17.1 -5.8096 | opp_overlap 2298847 TTAAACTTAGAAAAA TGGGTGTAGTAAG CAATA CTTACTACACCCA TTTTTATTTTTTCTC TERM 2998 2298877 - 2298847 - T 100 -17.8 -4.94992 | opp_overlap 2298847 TTAAACTTAGAAAAA TGGGTGTAGTAAGC AAT ACTTACTACACCCA TTTTTATTTTTTCTC CLL_A2215 2299938 - 2298937 - | putative exported peptidoglycan lytic protein TERM 2999 2300149 - 2300133 - R 100 -10.9 -5.72622 | opp_overlap 2300133 TTTATAAATAAAAAA GTGGCTA ATA TAGCCAC TTTTCTCAAAATCTT TERM 3000 2300133 - 2300149 + r 100 -10.9 -4.39828 | opp_overlap 2300133 TTTATAAATAAAAAA GTGGCTA ATA TAGCCAC TTTTCTCAAAATCTT CLL_A2216 2300577 - 2300203 - | hypothetical protein TERM 3001 2301001 - 2300980 - g 70 -8.1 -3.05455 | overlap 2300970 AAAATCTAAATTACA CTTAGTAGC TAAC GCTACTAAA AATATCTCTCAAAAT CLL_A2217 2300945 - 2301211 + | hypothetical protein TERM 3002 2301258 - 2301298 + F 100 -12.7 -5.34055 | opp_overlap 2301262, overlap 2301259 TACAATAATTATCAT TGAAGCCTCAGACTCTTTT AAT AAATCAGTCTGAGGCTTCC TTTTTTAATATTTAT TERM 3003 2301259 - 2301297 + F 100 -16.2 -3.77993 | opp_overlap 2301262, overlap 2301258 ACAATAATTATCATT GAAGCCTCAGACTCTTTT AAT AAATCAGTCTGAGGCTTC CTTTTTTAATATTTA TERM 3004 2301294 - 2301262 - f 93 -12.1 -3.11955 | opp_overlap 2301259 2301258 ATAATTATCATTGAA GCCTCAGACTCTTTT AAT AAATCAGTCTGAGGC TTCCTTTTTTAATAT CLL_A2218 2301452 - 2301847 + | thioesterase family protein TERM 3005 2301928 - 2301888 - T 70 -7 -3.82604 | opp_overlap 2301888 TTATTTAACCAAGAA GAGGCTAACAAATTGATT TTTAC AATCATTATGTTAGTCTC TTTTTTCCTATTTAG TERM 3006 2301888 - 2301928 + T 100 -9.2 -5.32699 | opp_overlap 2301888 TTATTTAACCAAGAA GAGGCTAACAAATTGATT TTTAC AATCATTATGTTAGTCTC TTTTTTCCTATTTAG TERM 3007 2302061 - 2302037 - T 100 -7.2 -6.01369 | TAAAGAATAAAAAAA GCTGTTGC ATTATATTA GCAACAGC TATAAAATCTTCTCA CLL_A2219 2302905 - 2302084 - | hypothetical protein TERM 3008 2303003 - 2302982 - R 84 -5.1 -5.64321 | AGAATAAAACAAAAA GCAGAGCCT TCCC AAACCCTGC TTTTCTTTTTGTATT CLL_A2220 2304156 - 2303164 - | hypothetical protein TERM 3009 2303922 - 2303936 + g 70 -5 -4.74012 | ATGATATTTCTTTAT TGTCGT TTA ATGACA TTTTCATTTTATCAT CLL_A2221 2304637 - 2304149 - | RNA polymerase sigma-70 factor TERM 3010 2304890 - 2304854 - R 100 -12.7 -4.371 | opp_overlap 2304854 TTTATTATACTAAAA TAAGCTATATTATTG AAAAAAA CAATAATATAGCTTA TTTTTAATTAAATAA TERM 3011 2304854 - 2304890 + r 100 -12.7 -4.88407 | opp_overlap 2304854 TTTATTATACTAAAA TAAGCTATATTATTG AAAAAAA CAATAATATAGCTTA TTTTTAATTAAATAA CLL_A2222 2306018 - 2304927 - | ribose-phosphate pyrophosphokinase CLL_A2223 2306424 - 2306972 + | ribosomal protein L25, Ctc-form TERM 3012 2307294 - 2307280 - g 78 -5.7 -4.95896 | opp_overlap 2307279 ACAAACTTAGAAAAA CTGGA TTAAT TCCAG GTATAATTTTCGGTG TERM 3013 2307396 - 2307374 - g 72 -6.5 -4.36554 | opp_overlap 2307377 TAGGATGATAAGAAA TAATAATAG TGGTT CTATTATTA CTCTAGATTTAGAGG TERM 3014 2307437 - 2307420 - g 84 -5.7 -5.34555 | overlap 2307413 TTAGAGGATAAAAAA TTTAACT GTGT AGTTAAA GAGATACAAAAACTT CLL_A2224 2307213 - 2307758 + | ribosomal protein L25, Ctc-form CLL_A2225 2309810 - 2308053 - | ATP-dependent RNA helicase, superfamily II TERM 3015 2310730 - 2310718 - g 72 -4.9 -4.89605 | TAAAAAAATAATAAA TGATA CAA TATCA AAACAAATTATCAGT CLL_A2226 2310188 - 2310946 + | hypothetical protein TERM 3016 2311078 - 2311127 + T 70 -6 -4.2717 | gap 1, opp_overlap 2311090, overlap 2311090 AATTCTACAACTTTC TATAT-ATGAAAAGGGAGCCACT CTATT AGTAGCTCCCTTTAAATTATATA TTTTCATGCAATACT TERM 3017 2311090 - 2311114 + T 93 -10 -3.84996 | opp_overlap 2311090, overlap 2311078 TTCTATATATGAAAA GGGAGCCACT CTATT AGTAGCTCCC TTTAAATTATATATT TERM 3018 2311114 - 2311090 - T 100 -12.2 -4.39166 | opp_overlap 2311078 2311090 TTCTATATATGAAAA GGGAGCCACT CTATT AGTAGCTCCC TTTAAATTATATATT aroD 2311885 - 2311121 - | 3-dehydroquinate dehydratase, type I pepT 2313270 - 2312050 - | peptidase T TERM 3019 2312930 - 2312952 + g 83 -8.6 -4.35116 | TCTGGAAATCTTTCT GGAGATAATA TGC TATTATTTCC TTTTAATATAACATC CLL_A2229 2315242 - 2313467 - | hypothetical protein TERM 3020 2314506 - 2314518 + g 72 -3.3 -5.20534 | TTATTTTCTATTTTA CACCC TTT GGATG TTTTTATTGGTTCAT TERM 3021 2315527 - 2315478 - H 100 -14.1 -3.3215 | opp_overlap 2315473 2315481 2315483 2315485, overlap 2315473 2315474 2315481 ATCAAAAAAATCACA TAATATATGCTGATTATTTATGT ATAT AAAAAAATAATCAGCATATATTA AATCATAAGCAAGTT TERM 3022 2315524 - 2315481 - H 95 -11.4 -3.75803 | opp_overlap 2315473 2315481 2315483 2315485, overlap 2315473 2315478 2315474 AAAAAAATCACATAA TATATGCTGATTATTTATGT ATAT AAAAAAATAATCAGCATATA TTAAATCATAAGCAA TERM 3023 2315481 - 2315524 + H 87 -11.4 -3.09516 | opp_overlap 2315473 2315481 2315478 2315474, overlap 2315473 2315483 2315485 AAAAAAATCACATAA TATATGCTGATTATTTATGT ATAT AAAAAAATAATCAGCATATA TTAAATCATAAGCAA TERM 3024 2315483 - 2315522 + H 78 -9.6 -3.10796 | opp_overlap 2315473 2315481 2315478 2315474, overlap 2315473 2315481 2315485 AAAAATCACATAATA TATGCTGATTATTTATGT ATAT AAAAAAATAATCAGCATA TATTAAATCATAAGC CLL_A2230 2315580 - 2315825 + | hypothetical protein TERM 3025 2315917 - 2315954 + T 78 -8.5 -3.84394 | opp_overlap 2315917 AAAATAATATAAAAA CTGCCCTAAAATGATTA TTAA TACTCTATTTAGGGCAG TTTACATTATATATA TERM 3026 2315954 - 2315917 - T 95 -8.5 -5.25799 | opp_overlap 2315917 AAAATAATATAAAAA CTGCCCTAAAATGATTA TTAA TACTCTATTTAGGGCAG TTTACATTATATATA CLL_A2231 2317277 - 2315979 - | surface protective antigen SpaB TERM 3027 2316383 - 2316401 + g 72 -6.2 -4.30719 | opp_overlap 2316380 2316383 2316378 CTTTATAAAATATAT TATTATTA GAA TAATAATA TTTGTTATCCGAAGC TERM 3028 2318952 - 2318932 - g 73 -5.5 -4.67608 | overlap 2318908 2318933 TATTTGAAGATAAAA CTCCAATTA AAG CAATTGGAA GCATAGTAAATATAG TERM 3029 2320396 - 2320408 + G 72 -4.9 -4.87786 | opp_overlap 2320396 CTTTAGACCATAAAG CAAAT CTA ATTTG TTTTTCTAACGTTAC CLL_A2232 2317755 - 2321711 + | diguanylate cyclase/phosphodiesterase TERM 3030 2321707 - 2321738 + F 77 -8.9 -3.4647 | gap 1, opp_overlap 2321715, overlap 2321715 AAAAAAAATTATGGG GATAAAAAGGTGGC ATTTA GCCGCCTTTTT-TC TATTTAAATATTAGC TERM 3031 2321715 - 2321731 + F 91 -7.2 -5.56264 | opp_overlap 2321715, overlap 2321707 TTATGGGGATAAAAA GGTGGC ATTTA GCCGCC TTTTTTCTATTTAAA TERM 3032 2321731 - 2321715 - f 70 -5 -4.84359 | opp_overlap 2321715 2321707 TTATGGGGATAAAAA GGTGGC ATTTA GCCGCC TTTTTTCTATTTAAA TERM 3033 2322948 - 2322935 - g 82 -2.5 -6.11243 | ATTCAATAAAAAAAA TTTAT ATAG ATAAA AAATACAGTATTTCT TERM 3034 2324816 - 2324799 - g 81 -7.1 -4.81551 | GATGGATACTAAAAA GAAATTG CTAC CAATTTC TATGAATGTATCAAG CLL_A2233 2322154 - 2325300 + | MorA TERM 3035 2325335 - 2325387 + F 95 -12.5 -3.57825 | opp_overlap 2325335 2325332, overlap 2325347 CTTAATAAAAAACAA CCTTTATAGTAAGTATAAAAGTTCT TAT ATGATTTTTATACTTATTATAAGGG TTCCTATTTTATAAA TERM 3036 2325896 - 2325913 + G 76 -8.5 -3.54638 | TAAAGTTGCACTTGG GCATCAT AAAG ATGATGC TTTAGAAACGCTTAT CLL_A2234 2325516 - 2326235 + | ExsB family protein TERM 3037 2326274 - 2326221 - T 93 -10.1 -4.16842 | opp_overlap 2326204 2326233, overlap 2326223 2326224 TTTATTTGGAATAAA GACTTAATTAAATGAGGATATTT TGTAACTG AAATATCCTCATTTAACTAAATA CCCCTTATTCATTTA TERM 3038 2326272 - 2326223 - T 95 -12.7 -3.68324 | opp_overlap 2326233, overlap 2326221 2326224 TATTTGGAATAAAGA CTTAATTAAATGAGGATATTT TGTAACTG AAATATCCTCATTTAACTAAA TACCCCTTATTCATT TERM 3039 2326271 - 2326224 - T 100 -14 -2.80512 | opp_overlap 2326233, overlap 2326223 2326221 ATTTGGAATAAAGAC TTAATTAAATGAGGATATTT TGTAACTG AAATATCCTCATTTAACTAA ATACCCCTTATTCAT TERM 3040 2326233 - 2326262 + T 84 -9.5 -3.6682 | opp_overlap 2326224 2326223 2326221 AAAGACTTAATTAAA TGAGGATATTTTG TAAC TGAAATATCCTCA TTTAACTAAATACCC TERM 3041 2326295 - 2326308 + T 72 -3.9 -5.28983 | overlap 2326286 2326285 TATTCATTTATAATT TGATT ATAA AATCA TTTTTCTATTTTGAA CLL_A2235 2326469 - 2326314 - | hypothetical protein CLL_A2236 2326728 - 2327336 + | hypothetical protein CLL_A2237 2327518 - 2328063 + | sugar fermentation stimulation protein TERM 3042 2328068 - 2328038 - T 100 -9.9 -4.85129 | opp_overlap 2328032 2328038, overlap 2328042 ATGATATATTAAAAA GAAAGCTACTGCA ACTAA TACAATAGCTTTC TAATTATCTTATTAT TERM 3043 2328064 - 2328042 - T 72 -4.9 -4.94262 | opp_overlap 2328038 2328032, overlap 2328038 TATATTAAAAAGAAA GCTACTGCA ACTAA TACAATAGC TTTCTAATTATCTTA CLL_A2238 2329032 - 2328307 - | hypothetical protein CLL_A2239 2329201 - 2329362 + | hypothetical protein TERM 3044 2329386 - 2329359 - T 100 -7.9 -5.31072 | opp_overlap 2329359 AGAATATAACAAAAA GTAGCTATCTA TTAATT TAAATAGCTAC TTTTTTATTTATAAT TERM 3045 2329359 - 2329386 + T 86 -5.7 -5.73978 | opp_overlap 2329359 AGAATATAACAAAAA GTAGCTATCTA TTAATT TAAATAGCTAC TTTTTTATTTATAAT TERM 3046 2329571 - 2329519 - T 78 -5.9 -4.93288 | opp_overlap 2329522 2329523, overlap 2329506 2329501 2329522 AATACTTAAATAAAA TACTTAGGTATCAAAATAATACTTA AAT TTAGTATTGTTTTAATACCTATTTA TATAAAAAAATAAGG TERM 3047 2329523 - 2329567 + T 100 -11.1 -4.03413 | opp_overlap 2329506 2329501 2329522 2329519, overlap 2329522 CTTAAATAAAATACT TAGGTATCAAAATAATACTTA AAT TTAGTATTGTTTTAATACCTA TTTATATAAAAAAAT TERM 3048 2329627 - 2329582 - T 100 -12.2 -5.72616 | opp_overlap 2329585 ATTTATATAAAAAAA TAAGGGATAATACCTAGAGA TTTTAC TCTCTACATATTACCCCTTA AATGTTTTCTAATTT CLL_A2240 2329935 - 2329750 - | LexA DNA binding domain TERM 3049 2330004 - 2330035 + r 100 -11.9 -5.43621 | opp_overlap 2330004 ATTATAACATAAAAA GAACAGTATATAT AATTTA ATATATACTGTTC TTTTTTGTGCTTTCT TERM 3050 2330035 - 2330004 - R 100 -11.9 -5.16133 | opp_overlap 2330004 ATTATAACATAAAAA GAACAGTATATAT AATTTA ATATATACTGTTC TTTTTTGTGCTTTCT TERM 3051 2330333 - 2330297 - R 74 -8.1 -3.40926 | opp_overlap 2330297, overlap 2330296 ATAACATAAATAAAG GTTAGTGGCATGTATAT TAA ACTTATACGCCACTAAC TTTTTTGTTCAATGA TERM 3052 2330297 - 2330333 + r 85 -6 -5.4833 | opp_overlap 2330296 2330297 ATAACATAAATAAAG GTTAGTGGCATGTA TATTAAACT TATACGCCACTAAC TTTTTTGTTCAATGA TERM 3053 2330573 - 2330541 - R 100 -10.1 -5.17353 | opp_overlap 2330541 ATATGTACTAAAAAA GTAGTAGTATATAAA ACT TTGATACACTACTAC TTTTTTTATTGTTCA TERM 3054 2330541 - 2330573 + r 100 -7.9 -5.95946 | opp_overlap 2330541 ATATGTACTAAAAAA GTAGTAGTATATAAA ACT TTGATACACTACTAC TTTTTTTATTGTTCA CLL_A2241 2331488 - 2330688 - | putative phage lysozyme TERM 3055 2331542 - 2331524 - R 93 -7.4 -5.7827 | opp_overlap 2331524 AATATAAAGAAAAAA GGTAGCTA TAA TCGCTACC TAAATTACTCTTTAA CLL_A2242 2331720 - 2331547 - | hypothetical protein CLL_A2243 2331951 - 2331739 - | hypothetical protein TERM 3056 2332196 - 2332168 - R 70 -7 -3.69734 | gap 1, opp_overlap 2332176 AATAACTTATCTAAA TTTACA-GAGAAA ATTA TTTCTCATGTAAA ATAGTAGAGCTAGTT TERM 3057 2332299 - 2332282 - R 90 -6.3 -5.8187 | opp_overlap 2332279 TATTTAATAAAAAAA GACCAAG TCTT CTTGATC TACTAATTTAATATT CLL_A2244 2332587 - 2332369 - | hypothetical protein CLL_A2245 2332902 - 2332612 - | hypothetical protein CLL_A2246 2334355 - 2332904 - | hypothetical protein TERM 3058 2333809 - 2333819 + g 73 -5.4 -4.7871 | overlap 2333814 CAACTTCTGTTATTT TGCT ACT AGCA TTTTTAGTACTAGTT CLL_A2247 2336109 - 2334367 - | putative phage endopeptidase CLL_A2248 2336783 - 2336106 - | putative phage tail component CLL_A2249 2340263 - 2336799 - | tail tape measure protein TERM 3059 2337168 - 2337180 + g 75 -3.4 -5.5074 | TACTGCATCTCCAAC TGCA CTTGC TGCA TTTTTTATTCCATTA TERM 3060 2338892 - 2338912 + g 73 -7.7 -3.78953 | opp_overlap 2338892 TCATCATACTATTAA CATTATCTT GTA AAGGTAATG TTTCATCATAAGCAT TERM 3061 2338978 - 2338991 + g 72 -6.7 -4.2535 | opp_overlap 2338977 ACATTGTAATTAACT GATGC TAAC GCATC TTTTAAATCTAATGT TERM 3062 2339177 - 2339189 + g 70 -6.3 -4.25104 | opp_overlap 2339176 CAGCATCTAAACATT CAACT CCA AGTTG TTTTAATACACCGGC TERM 3063 2340319 - 2340299 - R 83 -6.1 -5.40873 | opp_overlap 2340299 AATATAAAAATAAAA GACTAGGTA AAA TTCCTAGCC TTTCTTAAATCTATT CLL_A2250 2340577 - 2340314 - | hypothetical protein CLL_A2251 2340903 - 2340580 - | hypothetical protein TERM 3064 2340755 - 2340776 + g 74 -8.8 -3.24516 | overlap 2340754 ATAGTGTTTTCTTTA GCCTTACT AAGTCC AGTAAGGC GTTTTAATAATTTTA CLL_A2252 2341487 - 2340906 - | hypothetical protein CLL_A2253 2341810 - 2341490 - | hypothetical protein TERM 3065 2341594 - 2341612 + g 77 -3.2 -5.71295 | TTATTGATTTTTCTT TTAATAGA TCT TCAATTAA TTTTTCTTTTTCTCT CLL_A2254 2342192 - 2341803 - | hypothetical protein CLL_A2255 2342527 - 2342192 - | hypothetical protein CLL_A2256 2342832 - 2342527 - | Gp6 protein CLL_A2257 2344043 - 2342847 - | major capsid protein a TERM 3066 2343705 - 2343685 - G 70 -6.3 -4.08767 | opp_overlap 2343678 2343685 2343680 GTCATGTTTTGAAAA TCAATCATT TCT AATAATTGA TGTTCTGCTCTCATA CLL_A2258 2344786 - 2344043 - | peptidase S14, ClpP CLL_A2259 2345936 - 2344779 - | phage portal protein, HK97 family TERM 3067 2345000 - 2344961 - G 100 -13.4 -3.56155 | gap 1, opp_overlap 2344959, overlap 2344959 CAGCAATACTAAATA TATCTATATGCTTGATATT AGT AATATCAA-CATATAGATA GCTGCCTTTAAAAAA TERM 3068 2345985 - 2345969 - R 90 -6.6 -5.79595 | opp_overlap 2345969 2345979, overlap 2345979 GCCCAAAATAAAAAA GCCTTA TTAAT TAAGGC TTAATTTCTACAACT CLL_A2260 2346263 - 2345979 - | hypothetical protein CLL_A2261 2347923 - 2346277 - | putative phage terminase, large subunit TERM 3069 2347173 - 2347184 + g 75 -5.8 -4.6313 | opp_overlap 2347172 AATGATATAAAAGTG GCAG CATT CTGC TTGTTTTATTTTCAC CLL_A2262 2348413 - 2347913 - | hypothetical protein TERM 3070 2348327 - 2348337 + g 80 -4 -5.64274 | opp_overlap 2348327 TTCAGATACACCATA TTTC AAA GAAA TTTTTTTATAAGTCA CLL_A2263 2348896 - 2348570 - | Gp54 protein CLL_A2264 2349201 - 2348884 - | hypothetical protein TERM 3071 2349264 - 2349236 - R 85 -8.3 -4.70583 | opp_overlap 2349239 TTTATGAACATAAAA TAAGCACCTATTA AAT TTATAGATGCTTA AATATAAATTATTAA CLL_A2265 2349901 - 2349389 - | hypothetical protein CLL_A2266 2350103 - 2349918 - | hypothetical protein CLL_A2267 2350451 - 2350155 - | replicase domain protein TERM 3072 2350238 - 2350214 - G 80 -10.2 -2.77899 | opp_overlap 2350213 2350216, overlap 2350216 2350218 TCTTTTTACCAATTA GATATTGAAG TACAT CTTCAATATC ATCTATCAATACACT TERM 3073 2350277 - 2350289 + g 70 -7.7 -3.39784 | overlap 2350275 ATGGACTTCTCAATG GTAGC TCT GCTAC TGTTATTGGAAATGG TERM 3074 2350529 - 2350500 - R 80 -5.9 -5.26875 | gap 1 TCGTGAATTAAAAAA TACCGCA-CATTCA TTT TGAATAATACGGTA TTTACATGCATTTAG CLL_A2268 2350837 - 2350589 - | spore coat protein F CLL_A2269 2351035 - 2350850 - | hypothetical protein CLL_A2270 2351809 - 2351138 - | cotJC protein CLL_A2271 2352347 - 2351934 - | gp91 CLL_A2272 2352663 - 2352379 - | hypothetical protein CLL_A2273 2353045 - 2352890 - | hypothetical protein CLL_A2274 2353402 - 2353058 - | hypothetical protein CLL_A2275 2353840 - 2353415 - | single-strand binding protein family TERM 3075 2353742 - 2353754 + g 74 -4.1 -5.19212 | TTTAATCTTTCTTCT TACTG CAA CAGTG TTTTTTAATACTGCT CLL_A2276 2354838 - 2353852 - | ParB protein TERM 3076 2354110 - 2354128 + g 100 -8.9 -5.32599 | TTCTTCACTTTTGTT TGTGTCC AAAAC GGACACA TTTTTATCTTTTATA TERM 3077 2354160 - 2354174 + g 73 -2.9 -5.4477 | overlap 2354168 CCTTAGACTTAACAG TTTCT CCACA AGAAA TTTTTTTAGCAATTT TERM 3078 2354316 - 2354348 + g 75 -7.1 -4.08939 | overlap 2354317 CCATTCTAGCTACTT GAGTTGCAGATGTAT TTA ATATATCTGCAACAA TTTCTCTAACTCTTC TERM 3079 2354317 - 2354347 + g 84 -10.6 -3.0464 | overlap 2354316 CATTCTAGCTACTTG AGTTGCAGATGTAT TTA ATATATCTGCAACA ATTTCTCTAACTCTT CLL_A2277 2355613 - 2354831 - | Soj protein CLL_A2278 2356029 - 2355616 - | YopX protein CLL_A2279 2356208 - 2356047 - | hypothetical protein CLL_A2280 2356587 - 2356198 - | VRR-NUC domain protein CLL_A2281 2357439 - 2356594 - | hypothetical protein CLL_A2282 2357697 - 2358083 + | hypothetical protein TERM 3080 2358124 - 2358152 + T 100 -13.3 -5.24291 | ATTATTTTTCTTAAT CTGCTCTTGAACT GAT ACTTCAAGAGCAG TTTTATTTTCATTTT CLL_A2283 2358424 - 2358281 - | hypothetical protein CLL_A2284 2358689 - 2358910 + | hypothetical protein TERM 3081 2358920 - 2358948 + T 100 -10.5 -5.99154 | AAATAATTCTTCTTA TGACTTAGAGA TAAACAT TCTCTAAGTCA TTTTTTTATTTACTG CLL_A2285 2359123 - 2358941 - | hypothetical protein TERM 3082 2359095 - 2359110 + g 74 -4 -5.34381 | ATTTCATTTTTATTC TTGCAG TCTG CTGTAA TTTTTATTTCCATTT TERM 3083 2359326 - 2359298 - R 80 -9.7 -3.1505 | opp_overlap 2359298 ATTAGTTTTTATTAA CTGCTCTTGAACT GGT ACTTCAAAAGCAG TTTTCTATCCCCCTT TERM 3084 2359298 - 2359326 + r 81 -7.5 -4.53705 | opp_overlap 2359298 ATTAGTTTTTATTAA CTGCTCTTGAACT GGT ACTTCAAAAGCAG TTTTCTATCCCCCTT CLL_A2286 2359494 - 2359348 - | hypothetical protein TERM 3085 2359572 - 2359560 - H 70 -6.3 -4.36595 | opp_overlap 2359560 2359559 CATTCAAACTGAAAA CTACT GAA AGTAG CTCTTATCATGTTCT CLL_A2287 2359729 - 2360265 + | transcriptional regulator CLL_A2288 2360355 - 2360552 + | hypothetical protein CLL_A2289 2360592 - 2361011 + | hypothetical protein TERM 3086 2361051 - 2361021 - f 95 -12.9 -3.82531 | opp_overlap 2361025, overlap 2361025 AAATAATGTACGAAA TAAAGAGTTATGA AAATA TCATAACTCTTTA AAAATATATAAAATA TERM 3087 2361025 - 2361047 + F 83 -9.3 -3.60234 | opp_overlap 2361021 2361025 AATGTACGAAATAAA GAGTTATGA AAATA TCATAACTC TTTAAAAATATATAA TERM 3088 2361047 - 2361025 - f 93 -9.3 -4.5123 | opp_overlap 2361025, overlap 2361021 AATGTACGAAATAAA GAGTTATGA AAATA TCATAACTC TTTAAAAATATATAA TERM 3089 2361866 - 2361842 - g 72 -5.1 -4.90136 | opp_overlap 2361849, overlap 2361845 AATTAATACTAAAAA GAAGAAATATA AAA TATATTCCTAC AAAAAGAATTTTTTT TERM 3090 2361863 - 2361845 - g 70 -5.4 -4.53398 | opp_overlap 2361849, overlap 2361842 TAATACTAAAAAGAA GAAATATA AAA TATATTCC TACAAAAAGAATTTT CLL_A2290 2361091 - 2362434 + | phage site-specific recombinase CLL_A2291 2362510 - 2362731 + | sugar fermentation stimulation protein CLL_A2292 2363288 - 2362884 - | arsenate reductase CLL_A2293 2363642 - 2363316 - | arsenical resistance operon repressor TERM 3091 2364093 - 2364108 + H 72 -7.6 -3.64523 | GAAATATTAGTATTC CTAGCA TTTC TGCTAG TTATCATTTGGTATT CLL_A2294 2364196 - 2364648 + | GnaT-family acetyltransferase TERM 3092 2364663 - 2364640 - T 100 -11.2 -5.53079 | opp_overlap 2364642 AAAATATACAAAAAA GAGTTATAAG AAAG CTTATAACTC TTAAAAATCACAAAT CLL_A2295 2364833 - 2364678 - | hypothetical protein TERM 3093 2364983 - 2365020 + r 100 -15.1 -4.61852 | opp_overlap 2364983 TTTTATACATAAAAA TCCCCTTTAGAGTAAAT AATC ATTCGCTCTAAAGGGGA TTTCTTTATAATATT TERM 3094 2365020 - 2364983 - R 100 -15.1 -5.03994 | opp_overlap 2364983 TTTTATACATAAAAA TCCCCTTTAGAGTAAAT AATC ATTCGCTCTAAAGGGGA TTTCTTTATAATATT CLL_A2296 2366926 - 2365034 - | PTS system, fructose-specific component family TERM 3095 2365166 - 2365154 - G 77 -7.7 -4.11585 | ACCTATTACAAATAA TCCAC CAT GTGGA GCTCTTAAAGCACAC pfkB 2367850 - 2366948 - | 1-phosphofructokinase CLL_A2298 2368598 - 2367843 - | lactose phosphotransferase system repressor TERM 3096 2368449 - 2368482 + g 75 -8.5 -3.36862 | gap 1, opp_overlap 2368459, overlap 2368455 2368459 TCCTCCATGAATTTT TTTAAGCAATCCTTCA TTG TGAAG-ATTGTTTAAA TCTCTTCTTATTGTA TERM 3097 2369283 - 2369255 - R 83 -7.6 -4.6902 | opp_overlap 2369255 2369256, overlap 2369256 GTACAAGTGCAAAAA GGATGTATCAAA TTCGT TTTGATACATCT CTTTTATTAAAACTA TERM 3098 2369255 - 2369284 + r 79 -7.4 -4.64676 | gap 1, opp_overlap 2369255 2369256, overlap 2369256 GTACAAGTGCAAAAA G-GATGTATCAAA TTCGT TTTGATACATCTC TTTTATTAAAACTAA TERM 3099 2369256 - 2369282 + r 100 -11.1 -3.93768 | opp_overlap 2369256 2369255, overlap 2369255 TACAAGTGCAAAAAG GATGTATCAAA TTCGT TTTGATACATC TCTTTTATTAAAACT TERM 3100 2369282 - 2369256 - R 93 -11.1 -3.40689 | opp_overlap 2369255 2369256, overlap 2369255 TACAAGTGCAAAAAG GATGTATCAAA TTCGT TTTGATACATC TCTTTTATTAAAACT CLL_A2299 2369905 - 2369381 - | hypothetical protein CLL_A2300 2370664 - 2369969 - | PHP domain protein CLL_A2301 2372153 - 2370795 - | mate efflux family protein TERM 3101 2372288 - 2372244 - R 79 -9 -3.55582 | gap 1, opp_overlap 2372246 2372251, overlap 2372246 2372251 ACAATATTTATACAA CACAAAACATGGCAA-AATTT AAAC AAATCATTGCCATGTTTTATA TTACATCCCTTAATA TERM 3102 2372286 - 2372246 - R 82 -9.4 -3.3464 | gap 1, opp_overlap 2372246 2372251, overlap 2372244 2372251 AATATTTATACAACA CAAAACATGGCAA-AATTT AAAC AAATCATTGCCATGTTTTA TATTACATCCCTTAA TERM 3103 2372281 - 2372251 - R 81 -7.1 -4.76963 | gap 1, opp_overlap 2372246 2372251, overlap 2372246 2372244 TTATACAACACAAAA CATGGCAA-AATTT AAAC AAATCATTGCCATG TTTTATATTACATCC CLL_A2302 2373499 - 2372426 - | hypothetical protein TERM 3104 2373140 - 2373116 - G 70 -6.5 -4.08919 | opp_overlap 2373117 2373123, overlap 2373117 2373119 2373123 AAATTTTAAATCAAA GGACAAAGCAA ATT TTGCTTTATCT ATTACAATGTTAGTT TERM 3105 2373139 - 2373117 - G 81 -10 -3.04267 | opp_overlap 2373117 2373123, overlap 2373116 2373119 2373123 AATTTTAAATCAAAG GACAAAGCAA ATT TTGCTTTATC TATTACAATGTTAGT CLL_A2303 2374059 - 2373496 - | RNA polymerase sigma factor TERM 3106 2374201 - 2374163 - R 87 -6.8 -5.38054 | opp_overlap 2374163 2374165 TTCTATAAATAAAAA TACAGGATATTGGCCC TTGCATT GGACTATTATCCTGTA TATATAATGCTATAT CLL_A2304 2374662 - 2374273 - | hypothetical protein CLL_A2305 2375205 - 2374786 - | putative carboxymuconolactone decarboxylase TERM 3107 2375567 - 2375591 + r 71 -7.1 -3.91549 | opp_overlap 2375569, overlap 2375568 2375571 TTTTAAATATAGACC AATAGCAGGGA AAA TCCCTGCTAAC TTATATTGTTCTTAT TERM 3108 2375568 - 2375590 + r 82 -10.6 -2.93302 | opp_overlap 2375569, overlap 2375567 2375571 TTTAAATATAGACCA ATAGCAGGGA AAA TCCCTGCTAA CTTATATTGTTCTTA TERM 3109 2375589 - 2375569 - R 100 -14.1 -3.40082 | opp_overlap 2375568 2375567 2375571 TTAAATATAGACCAA TAGCAGGGA AAA TCCCTGCTA ACTTATATTGTTCTT TERM 3110 2375571 - 2375587 + r 88 -12.3 -2.68784 | opp_overlap 2375569, overlap 2375568 2375567 AAATATAGACCAATA GCAGGGA AAA TCCCTGC TAACTTATATTGTTC CLL_A2306 2376352 - 2375807 - | putative phosphoglycerate mutase family protein TERM 3111 2376751 - 2376726 - R 100 -12.1 -6.34616 | TTAAAATAAAAAAAA GTGTTTCAAAA ATAA TTTTGAAACAC ACACTCAAAATAATA TERM 3112 2376801 - 2376819 + r 75 -8.2 -3.5944 | opp_overlap 2376795 2376801 2376800, overlap 2376807 2376809 GTATTAGAATAAAAT CTCTAAGG CGA CTTTAGAG TTGTCGATTTTTTAG CLL_A2307 2378594 - 2376897 - | iron hydrogenase 1 TERM 3113 2378180 - 2378206 + g 86 -6 -5.48054 | opp_overlap 2378180 TTGGATCACGAACTA TTGATTTAGATG AAG TATCTAATTCAA TTTTTTCATTTTCAT CLL_A2308 2380517 - 2378637 - | putative iron hydrogenase, electron-transfer subunit CLL_A2309 2380998 - 2380507 - | Fe-hydrogenase gamma subunit TERM 3114 2381216 - 2381228 + r 77 -3.5 -5.66229 | overlap 2381222 AACACATAATTTACT TATTT GTA AAATA TTTTTTATTATTACT CLL_A2310 2381519 - 2381367 - | hypothetical protein CLL_A2311 2381814 - 2383241 + | cardiolipin synthetase TERM 3115 2383242 - 2383270 + F 100 -7.8 -5.35222 | opp_overlap 2383245 TCCCCTATTCTTTAA TAATAAAAAAAT TAATT ATTTTTTTATTA TTTTTTCTAAATTTT CLL_A2312 2383348 - 2384532 + | hypothetical protein TERM 3116 2384578 - 2384554 - T 100 -14.5 -5.14965 | opp_overlap 2384554 ATTTTTACTAAAAAA GATATCTTGGA TTT TCCAAGATATC TTTTTTTATTGCTTA TERM 3117 2384554 - 2384578 + T 100 -14.5 -5.87996 | opp_overlap 2384554 ATTTTTACTAAAAAA GATATCTTGGA TTT TCCAAGATATC TTTTTTTATTGCTTA CLL_A2313 2385691 - 2384609 - | lysophospholipase l2 pldb, hydrolase of alpha/beta superfamily TERM 3118 2386038 - 2386081 + r 100 -12.9 -5.01732 | opp_overlap 2386032 2386041, overlap 2386041 CTCAATATATATTTA AAATACCCTATTTAATATA ATTTTG TATATTAAATAGGGTATTA TTTTTTCAGAGAATT TERM 3119 2386041 - 2386078 + r 100 -14.6 -4.61482 | opp_overlap 2386032 2386041, overlap 2386038 AATATATATTTAAAA TACCCTATTTAATATA ATTTTG TATATTAAATAGGGTA TTATTTTTTCAGAGA TERM 3120 2386078 - 2386041 - R 100 -14.6 -4.27861 | opp_overlap 2386041 2386038, overlap 2386032 AATATATATTTAAAA TACCCTATTTAATATA ATTTTG TATATTAAATAGGGTA TTATTTTTTCAGAGA CLL_A2314 2386690 - 2386163 - | acetyltransferase, gnat family TERM 3121 2386907 - 2386869 - R 93 -12 -3.24804 | opp_overlap 2386871 2386876, overlap 2386876 AACTAAAGTAATATA TTTAAAAGCTTATACGCC TTC AGCATATAAGCTTTTATA GATTTCATATTATAG TERM 3122 2386871 - 2386905 + r 86 -11.7 -2.71461 | opp_overlap 2386869 2386876, overlap 2386876 CTAAAGTAATATATT TAAAAGCTTATACGC CTTCA GCATATAAGCTTTTA TAGATTTCATATTAT TERM 3123 2386876 - 2386900 + r 77 -7.2 -4.51799 | opp_overlap 2386869 2386876, overlap 2386871 GTAATATATTTAAAA GCTTATACGC CTTCA GCATATAAGC TTTTATAGATTTCAT TERM 3124 2386900 - 2386876 - R 95 -10.1 -4.28375 | opp_overlap 2386876 2386871, overlap 2386869 GTAATATATTTAAAA GCTTATACGCC TTC AGCATATAAGC TTTTATAGATTTCAT CLL_A2315 2388294 - 2386972 - | amino acid permease CLL_A2316 2389051 - 2388590 - | glutathione-regulated potassium-efflux system protein TERM 3125 2389273 - 2389219 - R 70 -7.6 -3.32941 | opp_overlap 2389228, overlap 2389228 TAAAACACAACTTAA TTATAAAAATAGCTGTGTTTAA TCTTAAGGATT TTTAACACAGCTATTATTATAA ATGAATAATTAAGAA CLL_A2317 2390529 - 2389291 - | dihydroorotate dehydrogenase family protein TERM 3126 2390318 - 2390328 + g 73 -5.4 -4.66987 | opp_overlap 2390318 TTAAAACCAACAAAT GAAG TTG CTTC TTTTCTTAAACTATC CLL_A2318 2391800 - 2390529 - | hypothetical oxidoreductase YeiT TERM 3127 2392104 - 2392065 - R 100 -11 -5.18643 | opp_overlap 2392064 TCAAGTAAAACAAAA CCATCTATTAAAGCAACA ATTA TGTTATTCTAATAGATGG CTAATCTTAATTTAT TERM 3128 2392356 - 2392381 + r 75 -6.4 -4.53047 | ACCTCCGAATTTTTT TATATTTCTA AATTTA TAGAAATATA TTTATTATCTTTAGT TERM 3129 2392795 - 2392757 - R 100 -7.8 -6.01369 | opp_overlap 2392761 TAAAGAATAAAAAAA TCTATATGTTTGTT TTTTACGATCT AACAAACATATAGA TTACACTAAGTATTT CLL_A2319 2394029 - 2392908 - | hypothetical protein CLL_A2320 2394698 - 2394036 - | sigma factor SgiI TERM 3130 2394162 - 2394172 + g 80 -4 -5.58454 | AAGTACAATTTTCTT GATT GGT AATC TTTTTTTAATCTCCA TERM 3131 2394872 - 2394896 + r 73 -8.9 -2.86259 | opp_overlap 2394876 2394893, overlap 2394866 2394876 2394893 2394894 TATATTATATACTCA TTAATTTTAAT TAA ATTAAAATTAA TACTATTATTAACTA TERM 3132 2395092 - 2395035 - R 100 -15.6 -3.99985 | gap 1, opp_overlap 2395041 2395052, overlap 2395040 2395052 TACATATTTAAAGAA TCAATTTATCATAAAAAGAATACATTT TTAAT AAATGTATTCTTTTTATGATAT-TTGA TTTGATATATATATA TERM 3133 2395088 - 2395040 - R 100 -16.6 -2.76911 | opp_overlap 2395041 2395052, overlap 2395035 2395052 ATTTAAAGAATCAAT TTATCATAAAAAGAATACATTT TTAAT AAATGTATTCTTTTTATGATAT TTGATTTGATATATA TERM 3134 2395041 - 2395087 + r 100 -20.1 -4.13341 | opp_overlap 2395040 2395035 2395052, overlap 2395052 TTTAAAGAATCAATT TATCATAAAAAGAATACATTT TTAAT AAATGTATTCTTTTTATGATA TTTGATTTGATATAT TERM 3135 2395076 - 2395052 - R 100 -8.8 -4.92783 | opp_overlap 2395041 2395052, overlap 2395040 2395035 AATTTATCATAAAAA GAATACATTT TTAAT AAATGTATTC TTTTTATGATATTTG TERM 3136 2395052 - 2395076 + r 100 -8.8 -5.00846 | opp_overlap 2395052 2395040 2395035, overlap 2395041 AATTTATCATAAAAA GAATACATTT TTAAT AAATGTATTC TTTTTATGATATTTG TERM 3137 2395253 - 2395222 - R 93 -7.6 -5.10461 | opp_overlap 2395222 TTTATTCAATAAAAA TAACAAATTAATTA CTAA TCATTAATTTGTTA TTTTACTATATTACA TERM 3138 2395222 - 2395253 + r 81 -7.6 -4.43213 | opp_overlap 2395222 TTTATTCAATAAAAA TAACAAATTAATTA CTAA TCATTAATTTGTTA TTTTACTATATTACA CLL_A2321 2396846 - 2395329 - | hypothetical protein CLL_A2322 2398350 - 2396839 - | hypothetical protein TERM 3139 2398123 - 2398133 + g 73 -5.4 -4.66318 | ATTACCATTATTAGG CATG TTC CATG TTTTGTTAGAATCAT TERM 3140 2398453 - 2398421 - R 74 -5 -5.11063 | gap 1, opp_overlap 2398429 2398431, overlap 2398423 2398429 ATTATTCAATAAAAA TATGAAAAGACCTGG ATAA CCAGATCTATTCA-A CTAATTCATAATTTT TERM 3141 2398452 - 2398423 - R 93 -10.1 -4.17914 | opp_overlap 2398429 2398431, overlap 2398421 2398429 TATTCAATAAAAATA TGAAAAGACCTGG ATAA CCAGATCTATTCA ACTAATTCATAATTT TERM 3142 2398446 - 2398429 - R 83 -7.7 -4.62102 | opp_overlap 2398429 2398431, overlap 2398423 2398421 ATAAAAATATGAAAA GACCTGG ATAA CCAGATC TATTCAACTAATTCA CLL_A2323 2398688 - 2398446 - | hypothetical protein CLL_A2324 2400348 - 2398855 - | hypothetical protein CLL_A2325 2400528 - 2401289 + | hypothetical protein TERM 3143 2401409 - 2401373 - f 86 -9.7 -3.84931 | overlap 2401376 GAAGAAACATCCAAA GAATTACCATATGAC TTAATTT GCCATATAGTAATTC CTAATTAAATTTATC CLL_A2326 2401447 - 2402010 + | hypothetical protein TERM 3144 2402089 - 2402135 + F 100 -16.2 -3.62535 | opp_overlap 2402086 2402085, overlap 2402091 TACCTTAATAATTTT TTTATCAGTTAGACTCAAGGTT ATT AATCTTGAGTCTAACTGATATC TTATATAGTATTTCA TERM 3145 2402091 - 2402133 + F 100 -23.2 -3.38034 | opp_overlap 2402086 2402085, overlap 2402089 CCTTAATAATTTTTT TATCAGTTAGACTCAAGGTT ATT AATCTTGAGTCTAACTGATA TCTTATATAGTATTT TERM 3146 2404026 - 2404006 - g 78 -9.9 -2.52104 | opp_overlap 2404010, overlap 2404005 2404010 AAATATTATTAAGAG CAAATTGTT TTG AACAATTTG ACAAAGCTGTACAAC CLL_A2327 2402415 - 2404217 + | glycosyltransferase fused to TPR-repeat domain TERM 3147 2404341 - 2404309 - T 100 -10.8 -4.50257 | gap 1, opp_overlap 2404309 AGATAATATAATAAA CCCAGTAGAACAACA GTAT TGCT-TTCTACTGGG TTTTTAAACTTAATT TERM 3148 2404309 - 2404341 + T 85 -8.6 -4.68506 | gap 1, opp_overlap 2404309 AGATAATATAATAAA CCCAGTAGAACAACA GTAT TGCT-TTCTACTGGG TTTTTAAACTTAATT CLL_A2328 2405721 - 2404396 - | DegT/DnrJ/EryC1/StrS aminotransferase CLL_A2329 2407804 - 2406125 - | putative glycosyl transferase, family 2 CLL_A2330 2408785 - 2407907 - | NAD dependent epimerase/dehydratase family CLL_A2331 2409906 - 2408809 - | putative methyltransferase TERM 3149 2409628 - 2409644 + g 70 -6.7 -3.98816 | TATATTATATTTATT TATCAAT TCT ATTGATA TTTCATATTGATTTG TERM 3150 2409809 - 2409783 - G 73 -5.4 -4.80736 | opp_overlap 2409783 TATCAAATAAACAAA TTAGATTATT GTCTTTT AATAATCTAA TTGTTCCCTTACTAG CLL_A2332 2411273 - 2410146 - | putative methyltransferase FkbM family TERM 3151 2411015 - 2411031 + g 93 -3.7 -6.17268 | overlap 2411018 ATGCAGTAAAAGCTG CAATACA TAC TGTAATG TTTTTTTTGTTATAA CLL_A2333 2412332 - 2411307 - | hypothetical protein TERM 3152 2411563 - 2411573 + g 70 -5.4 -4.55826 | TATTTAGTATCCTCT GGAA ATA TTCC TTTTAATATTTTAAC CLL_A2334 2414155 - 2412353 - | thiamine pyrophosphate enzyme TPP binding domain protein CLL_A2335 2415288 - 2414212 - | putative phosphoheptose isomerase CLL_A2336 2416117 - 2415293 - | sialic acid synthase rfbG 2417199 - 2416147 - | CDP-glucose 4,6-dehydratase rfbF 2417978 - 2417199 - | glucose-1-phosphate cytidylyltransferase TERM 3153 2417401 - 2417387 - G 75 -5.8 -4.74453 | TAATATACTCAAAAA TTTTAG GTT CTAAAA CCATATAACCCCCAT TERM 3154 2418225 - 2418199 - R 80 -8.1 -4.27441 | opp_overlap 2418199 ATGATGATGAAGAAA GGACCTACATT TATAC AATGCAGATCC TTTTTATATAAATAT CLL_A2339 2419975 - 2418257 - | putative flavin containing amine oxidoreductase TERM 3155 2419021 - 2419032 + g 86 -5.8 -5.48623 | opp_overlap 2419021 TATATATTCCACTAA TGGG AAAA CCCA TTTTTATTTCTATTT TERM 3156 2420100 - 2420042 - R 100 -15.2 -3.53091 | opp_overlap 2420045 2420059, overlap 2420045 2420059 ATCCTTTGTCTTAAA TTAGGCACATTCAAAAATAATAGAC-AG GCATA CTAGTCTATTATTTTTGAATGTGCCTT- ATCTTACTTTATAAA TERM 3157 2420098 - 2420045 - R 100 -23.8 -2.90496 | gap 1, opp_overlap 2420045 2420059, overlap 2420042 2420059 CTTTGTCTTAAATTA GGCACATTCAAAAATAATAGAC-AG GCATA CTAGTCTATTATTTTTGAATGTGCC TTATCTTACTTTATA TERM 3158 2420045 - 2420098 + r 100 -25.1 -3.81701 | opp_overlap 2420045 2420042 2420059, overlap 2420059 CTTTGTCTTAAATTA GGCACATTCAAAAATAATAGACAGG CATA CTAGTCTATTATTTTTGAATGTGCC TTATCTTACTTTATA TERM 3159 2420059 - 2420084 + r 71 -5.5 -4.71061 | opp_overlap 2420045 2420042 2420059, overlap 2420045 AGGCACATTCAAAAA TAATAGACAGG CATA CTAGTCTATTA TTTTTGAATGTGCCT CLL_A2340 2421238 - 2420099 - | cysteine desulfurase family protein TERM 3160 2421517 - 2421531 + r 71 -5.8 -4.58395 | TTATCTTATTACTGA TGTATT TAA AATACA TTTTTAAAAACTAAC CLL_A2341 2422381 - 2421608 - | hypothetical protein CLL_A2342 2422832 - 2423296 + | hypothetical protein CLL_A2343 2428351 - 2423624 - | putative cell surface protein TERM 3161 2423944 - 2423931 - G 70 -6.7 -3.91084 | CCACTGTGAATTAAA GTTCC TACT GGAAC AGATACTGCAGAGAC CLL_A2344 2430927 - 2428543 - | putative conserved repeat domain TERM 3162 2428671 - 2428707 + g 81 -9.8 -2.99541 | gap 1, opp_overlap 2428676, overlap 2428670 GAAGTATATAAGTCA CT-ATATCACCTATTTT AGCT AAGATAGGTGATATCAG CTTTGTCATGGTAAT TERM 3163 2430618 - 2430599 - G 72 -6.4 -4.37534 | opp_overlap 2430597 2430599, overlap 2430601 AAAGGTATATCAAAA GGTACTGG TAAT CCAGTAGC TCTTAAATTTTCATC CLL_A2345 2434326 - 2431174 - | imitation switch iswi TERM 3164 2433870 - 2433860 - G 71 -4 -5.14563 | CTTCCTATGAAAAAA TTTG CTT CAAA ATAATCTCCATTTTT TERM 3165 2434123 - 2434153 + g 80 -8.4 -3.91066 | opp_overlap 2434120 AGCTAAAGTAACTTT TCCACTTTTTAGAT CCA ATCTTAAATGTGGA TTATATTCTTTAAAT TERM 3166 2434388 - 2434357 - R 100 -11.8 -3.97019 | opp_overlap 2434354 2434364 AGCAATCCTAAATAA GCTTAAATAATCCA ATCT TGGTTTATTTAAGC AAATTATAAATATTA TERM 3167 2434442 - 2434407 - R 77 -7 -4.53036 | gap 1 TTATAAATATTAAAA GGAGCTTAGAG-ACC GGCGAAG GACACTCTAAGCTCC ATAATTAGCACTTTC CLL_A2346 2435048 - 2434533 - | heat shock protein DnaJ domain protein recQ 2437679 - 2435241 - | ATP-dependent DNA helicase RecQ TERM 3168 2436066 - 2436078 + g 80 -7.7 -4.53705 | opp_overlap 2436066 TCCAAATATAACGTA TGGAG GTA CTCCA TTTTCTGTAGAAATT TERM 3169 2437911 - 2437879 - R 95 -12.3 -3.41528 | opp_overlap 2437879 2437887, overlap 2437883 2437887 ATATAAATTTTATAA GGAATCAACTAAAAA TCC TCTTTAGTTAATTCC TCTACTCATTTTTAT CLL_A2348 2438723 - 2437926 - | lysozyme M1 TERM 3170 2438469 - 2438479 + g 84 -4 -5.8901 | overlap 2438463 ATCCAAACATGGTTT CAAA TCA TTTG TTTTTTCTTTTATAT CLL_A2349 2439047 - 2438781 - | hypothetical protein CLL_A2350 2439360 - 2439109 - | phage holin TERM 3171 2439545 - 2439516 - R 100 -12.5 -5.71712 | TTGTATACAAAAAAA TGAATCAAAATTA TAAT TAATTTTGATTCA GCCAATAATATATAG CLL_A2351 2439746 - 2439579 - | hypothetical protein CLL_A2352 2441081 - 2440074 - | YkwD protein TERM 3172 2441382 - 2441428 + r 100 -7.7 -5.28755 | gap 1, opp_overlap 2441387, overlap 2441384 2441387 ATGCTTTACATATAA GAAAATGGCTATATTACTTATA TCAT TATA-GTAATATAGCCATTGTA TTTTTTCATATATTT TERM 3173 2441384 - 2441426 + r 95 -10.3 -4.24891 | gap 1, opp_overlap 2441387, overlap 2441382 2441387 GCTTTACATATAAGA AAATGGCTATATTACTTATA TCAT TATA-GTAATATAGCCATTG TATTTTTTCATATAT TERM 3174 2441387 - 2441423 + r 100 -12 -4.20875 | gap 1, opp_overlap 2441387, overlap 2441384 2441382 TTACATATAAGAAAA TGGCTATATTACTTATA TCAT TATA-GTAATATAGCCA TTGTATTTTTTCATA TERM 3175 2441423 - 2441387 - R 100 -12 -4.87592 | gap 1, opp_overlap 2441384 2441382 2441387 TTACATATAAGAAAA TGGCTATATTACTTATA TCAT TATA-GTAATATAGCCA TTGTATTTTTTCATA nifJ 2444981 - 2441466 - | pyruvate:ferredoxin (flavodoxin) oxidoreductase TERM 3176 2442391 - 2442401 + g 72 -6.8 -4.08846 | overlap 2442380 2442385 GAGTTGGCCCATGCC GGAC CAT GTCC TTGTTGATTTTTTGT TERM 3177 2445267 - 2445220 - R 100 -10.3 -5.61596 | gap 1, opp_overlap 2445227, overlap 2445204 2445224 2445227 ATTTTTATAAAAAAA TAAATAAGGCATTTCAAATAGC AAATA ACTATTTGAAATGCCTT-TATA ATATTTGATGCAATG TERM 3178 2445264 - 2445224 - R 100 -13.6 -5.27709 | opp_overlap 2445227, overlap 2445220 2445227 TTATAAAAAAATAAA TAAGGCATTTCAAATAGC AAATA ACTATTTGAAATGCCTTT ATAATATTTGATGCA TERM 3179 2445227 - 2445261 + r 100 -14.6 -4.11033 | opp_overlap 2445224 2445220 2445227 TAAAAAAATAAATAA GGCATTTCAAATAG CAAATAA CTATTTGAAATGCC TTTATAATATTTGAT TERM 3180 2445261 - 2445227 - R 100 -15.3 -4.65305 | opp_overlap 2445227, overlap 2445224 2445220 TAAAAAAATAAATAA GGCATTTCAAATAGC AAATA ACTATTTGAAATGCC TTTATAATATTTGAT CLL_A2354 2446483 - 2445353 - | glycerate kinase 2 CLL_A2355 2447790 - 2446534 - | GntP family permease TERM 3181 2446884 - 2446862 - G 71 -7.8 -3.66178 | opp_overlap 2446858 2446862 2446861 CTTGGTAACCCTAAA GTGTTTATTC CTT GAATAATCAC ATCTTTTAAACCTGA TERM 3182 2447655 - 2447639 - G 76 -8.1 -3.78775 | CCTGCCATCATTAAA TTAACAG TAC CTGTTAA ACCAGCCCCTCCTAC TERM 3183 2447936 - 2447980 + r 95 -13.3 -2.97423 | opp_overlap 2447938, overlap 2447949 TACTTCATAAACTAA AATAGGATATAAATTAAACTT TAC AAGTTTAATTTATATCCTACA TATGCTGTTATTAGC TERM 3184 2447978 - 2447938 - R 100 -20.3 -4.61873 | opp_overlap 2447936 2447949 CTTCATAAACTAAAA TAGGATATAAATTAAACTT TAC AAGTTTAATTTATATCCTA CATATGCTGTTATTA TERM 3185 2447949 - 2447967 + r 77 -7.6 -4.0942 | opp_overlap 2447938, overlap 2447936 AAAATAGGATATAAA TTAAACTT TAC AAGTTTAA TTTATATCCTACATA CLL_A2356 2449020 - 2447956 - | putative carbohydrate diacid regulator TERM 3186 2449362 - 2449338 - R 100 -10.2 -5.38549 | opp_overlap 2449340 2449342 TCTAAATAATAAAAA TACAGGTATT ATATA AATACCTGTA TCTAAAAAATCAATT CLL_A2357 2449966 - 2449376 - | putative lipoprotein TERM 3187 2449868 - 2449884 + g 72 -6.6 -4.19735 | TTCCAAATAATTTTT CACCAT GTTAG ATGGTG TTTGCTTTTCAGCAC TERM 3188 2450122 - 2450170 + r 100 -15.2 -5.49568 | opp_overlap 2450125 2450132 TCCTGTATTTTTATA TAATTAAAAAGCTATAAAAATT AATTA AATTTTTATAGCTTCTTAATTA TTTTTCTTTTAGCTT TERM 3189 2450167 - 2450125 - R 100 -14.7 -3.49475 | opp_overlap 2450122, overlap 2450132 TGTATTTTTATATAA TTAAAAAGCTATAAAAATT AATTA AATTTTTATAGCTTCTTAA TTATTTTTCTTTTAG TERM 3190 2450160 - 2450132 - R 100 -10.6 -4.96646 | opp_overlap 2450122, overlap 2450125 TTATATAATTAAAAA GCTATAAAAATT AATTA AATTTTTATAGC TTCTTAATTATTTTT TERM 3191 2450335 - 2450313 - R 100 -12.2 -5.71712 | opp_overlap 2450313 TGCTACATAAAAAAA GGTTATAAGA AAA TCTTATAACC TTTAAAATCATAAAT TERM 3192 2450313 - 2450335 + r 95 -12.2 -3.62275 | opp_overlap 2450313 TGCTACATAAAAAAA GGTTATAAGA AAA TCTTATAACC TTTAAAATCATAAAT CLL_A2358 2450505 - 2450350 - | hypothetical protein CLL_A2359 2451995 - 2450718 - | pyridine nucleotide-disulphide oxidoreductase family protein CLL_A2360 2452981 - 2451992 - | electron transfer subunit protein CLL_A2361 2453308 - 2454081 + | hypothetical protein TERM 3193 2454267 - 2454321 + T 100 -11.3 -4.12133 | gap 1, opp_overlap 2454267 2454272, overlap 2454272 TTAAAAATTAACAGA TAAAATAGTCTGTTTAATTTAAGATA GGTT TTTCTTAA-TTAAACAGACTATTTTC TTATTTAATATTTAA TERM 3194 2454321 - 2454267 - T 93 -11.3 -3.30457 | gap 1, opp_overlap 2454267 2454272, overlap 2454272 TTAAAAATTAACAGA TAAAATAGTCTGTTTAATTTAAGATA GGTT TTTCTTAA-TTAAACAGACTATTTTC TTATTTAATATTTAA TERM 3195 2454272 - 2454316 + T 100 -11.2 -5.02606 | gap 1, opp_overlap 2454267 2454272, overlap 2454267 AATTAACAGATAAAA TAGTCTGTTTAATTTAAGATA GGTT TTTCTTAA-TTAAACAGACTA TTTTCTTATTTAATA TERM 3196 2454316 - 2454272 - T 100 -11.2 -4.70453 | gap 1, opp_overlap 2454272 2454267, overlap 2454267 AATTAACAGATAAAA TAGTCTGTTTAATTTAAGATA GGTT TTTCTTAA-TTAAACAGACTA TTTTCTTATTTAATA dacB 2455202 - 2454333 - | D-alanyl-D-alanine carboxypeptidase TERM 3197 2454390 - 2454403 + g 74 -2.5 -5.59879 | TGCAACTGTCTCTAA TATAT GATT ATATA TTTTTTGTGTTTGTG TERM 3198 2455619 - 2455574 - g 74 -6.7 -4.26495 | gap 1 CAAAAAAAAGAAAGA TTCT-TTAAATATTTTTGATAT GAT ACATAAAAAATATTTAATAGAA AAATTATATAACTCA CLL_A2363 2455386 - 2455952 + | hypothetical protein ytfJ 2455942 - 2456424 + | sporulation protein YtfJ TERM 3199 2456468 - 2456499 + T 100 -10.4 -4.77438 | opp_overlap 2456468 ACACATTAATTTAAA TGGGTGTATTAA TAAATACT TTAATACACCCA TTTTTAATAATAAAT TERM 3200 2456499 - 2456468 - T 91 -10.4 -3.80189 | opp_overlap 2456468 ACACATTAATTTAAA TGGGTGTATTAA TAAATACT TTAATACACCCA TTTTTAATAATAAAT scpB 2457193 - 2456600 - | segregation and condensation protein B CLL_A2366 2457932 - 2457177 - | ScpA/B protein TERM 3201 2458127 - 2458086 - R 70 -3.1 -5.28683 | opp_overlap 2458090 2458091, overlap 2458092 ACGAATAGTAAAAAA TGTAAATTAAGGGAAGTTA AAAA TAACTTCCCTTAAAATTTA ATGTATTATAAACAC TERM 3202 2458090 - 2458123 + r 78 -8.3 -3.95449 | opp_overlap 2458086 2458092, overlap 2458091 ATAGTAAAAAATGTA AATTAAGGGAAGTTA AAAA TAACTTCCCTTAAAA TTTAATGTATTATAA TERM 3203 2458091 - 2458122 + r 90 -11.8 -2.96546 | opp_overlap 2458086 2458092, overlap 2458090 TAGTAAAAAATGTAA ATTAAGGGAAGTTA AAAA TAACTTCCCTTAAA ATTTAATGTATTATA TERM 3204 2458121 - 2458092 - R 100 -15.3 -4.06778 | opp_overlap 2458091 2458090, overlap 2458086 AGTAAAAAATGTAAA TTAAGGGAAGTTA AAAA TAACTTCCCTTAA AATTTAATGTATTAT CLL_A2367 2459364 - 2458174 - | penicillin-binding protein DacF TERM 3205 2458698 - 2458716 + g 71 -4.6 -4.81852 | CTAATTTATTATGAT TCACTAGT TCA ATTGGTGA TTTTCTTCCTTCTGA TERM 3206 2459512 - 2459488 - R 79 -2.2 -6.02919 | opp_overlap 2459481 CTATAAACAAAAAAA CTGATACC ACTTTTATA AGTATCAG TTTTTTATATTCATA TERM 3207 2459516 - 2459531 + r 80 -3.4 -5.9218 | overlap 2459481 2459522 TATAAGTATCAGTTT TTTATA TTCA TATAAA TTTTTTTATTATATG CLL_A2368 2460657 - 2459779 - | tyrosine recombinase XerD TERM 3208 2460261 - 2460249 - G 71 -7.7 -3.62616 | opp_overlap 2460249 2460248 2460246 2460256 CAGTAGCATACATAA GCTCT AAT AGAGC ATTATCTCTAATTCC spoIIM 2461409 - 2460777 - | stage II sporulation protein M TERM 3209 2461598 - 2461574 - R 100 -8 -5.42131 | opp_overlap 2461597 TAATTACATAAAAAA TAGATGACTC GTATT AAGTCATCTA AAAAATTTTTTTATT CLL_A2370 2463186 - 2461612 - | alpha-amylase TERM 3210 2463278 - 2463252 - R 93 -11.1 -3.34517 | opp_overlap 2463251 2463256, overlap 2463250 2463256 ATTTGTTTCTAAATA TTAAGATAGGA TTAAT TCCTATCTTAA ATCATATAAATTTTA TERM 3211 2463274 - 2463256 - R 70 -7.5 -3.45571 | opp_overlap 2463251 2463256, overlap 2463252 2463250 GTTTCTAAATATTAA GATAGGA TTAAT TCCTATC TTAAATCATATAAAT CLL_A2371 2463718 - 2463296 - | hypothetical protein TERM 3212 2463828 - 2463802 - H 81 -9 -3.8698 | overlap 2463805 CAAGTTAAATTTAAA TAATTATACTTT TAT AAAGCATAATTA CAAGTCTTATACTCA TERM 3213 2464089 - 2464071 - g 71 -4.6 -4.85177 | AAAGGAGACGAAAAA GAAAATCT TTT AGACCTTC AAGATAGAACTTCTG CLL_A2372 2464002 - 2464544 + | hypothetical protein CLL_A2373 2464810 - 2465274 + | hypothetical protein CLL_A2374 2465868 - 2465320 - | hypothetical protein CLL_A2375 2466594 - 2465959 - | hypothetical protein CLL_A2376 2466803 - 2468125 + | berberine family protein TERM 3214 2468177 - 2468195 + T 77 -7.4 -4.53419 | AAAAACTAATCAGGA CCATCCAT AAA GTGGGTGG TTTGTTCTTGTCCTA TERM 3215 2468540 - 2468511 - T 100 -8.8 -5.41143 | opp_overlap 2468511, overlap 2468513 2468539 TATCTTTCAAAAAAA TATTACTGGAAA ATAAAA TTTCCAGTAACA TTTAATAACAAATGT TERM 3216 2468538 - 2468513 - T 89 -9.2 -4.34482 | opp_overlap 2468511, overlap 2468511 TCTTTCAAAAAAATA TTACTGGAAA ATAAAA TTTCCAGTAA CATTTAATAACAAAT TERM 3217 2468762 - 2468733 - T 86 -7.9 -4.87291 | opp_overlap 2468742 TACTGCAACCAAAAA GAAGATGTCCCTT TTCT AAGGTTCATCTTC TCAAATTACTATATA CLL_A2377 2468999 - 2468823 - | hypothetical protein TERM 3218 2469400 - 2469379 - R 86 -8.7 -4.38712 | TTTATTCTTACAAAA GGAGCCGTT ATAC AACAGCCCC TCCATATTTATTATT CLL_A2378 2469845 - 2469432 - | hypothetical protein TERM 3219 2470351 - 2470311 - R 76 -2 -5.88565 | overlap 2470313 TTGACAATAAAAAAA CACCTCCAATATATCAAG ATAAA CTCAAAATATTAAAGGTA TTTCTATTAACATAT CLL_A2379 2470997 - 2470764 - | hypothetical protein TERM 3220 2470956 - 2470929 - G 74 -2.8 -5.64421 | overlap 2470952 AGTCCAAATAAAAAA TCCCATAGCT ATACAACA AACTATAGGA AACCCAAAACTATTT CLL_A2380 2472045 - 2471002 - | hypothetical protein CLL_A2381 2472406 - 2472059 - | hypothetical protein TERM 3221 2472512 - 2472488 - R 82 -4.3 -5.73339 | opp_overlap 2472492 ATAATTATAAAAAAA GAACTATCCTA AAT TTGGATAATCC TTTTAATTATATTCT CLL_A2382 2473319 - 2472528 - | hypothetical protein CLL_A2383 2475253 - 2473946 - | hypothetical protein CLL_A2384 2477111 - 2475552 - | hypothetical protein CLL_A2385 2477493 - 2477104 - | hypothetical protein TERM 3222 2477937 - 2477897 - R 87 -10.5 -3.15768 | ACTAAAAGTTGAATA TTGTCCGATAAACCCCATC ACT AAAGAGGTCTATCGGACTA GGTATTTCACTCACT CLL_A2386 2478793 - 2477951 - | hypothetical protein CLL_A2387 2479004 - 2478819 - | hypothetical protein CLL_A2388 2480011 - 2479133 - | hypothetical protein TERM 3223 2479740 - 2479754 + g 78 -7.2 -4.46926 | GTTACATGATTATCC CAACAT TTT ATGTTG TTTTCTAATGCAATA TERM 3224 2480119 - 2480084 - R 75 -7.1 -4.33582 | opp_overlap 2480062, overlap 2480062 2480081 2480088 CTTAATAATAAATAA GAAAGATAGTAAATT AATTAA AATTCACCACCTTTC TATTTTTCTTTTTCA CLL_A2389 2480370 - 2480119 - | putative transcriptional regulatory protein TERM 3225 2480468 - 2480439 - R 88 -6.5 -5.52384 | TTGGTATTAAAAAAA GAGATGGTACA TTTTATTT TGTACCACCCC CTATAAATTAGGCTA CLL_A2390 2481309 - 2480476 - | hypothetical protein TERM 3226 2481370 - 2481348 - R 93 -7.1 -5.71712 | TTTTATATAAAAAAA GCCTTTAGA TTATC TCTAAAAGC CTAATTATCTTATTT CLL_A2391 2481871 - 2481380 - | hypothetical protein CLL_A2392 2482094 - 2481861 - | hypothetical protein TERM 3227 2482379 - 2482358 - R 83 -5.9 -5.43414 | ATTATATATAAAAAA CTCCATAGA TAAA TCTACAGAG TTAATTAACTAAATT TERM 3228 2482672 - 2482688 + r 72 -8 -3.53811 | opp_overlap 2482666 ATCAACCTATGTACA TGGGGA TAATC TCCCCA TTTAAAACAAATACA CLL_A2393 2483467 - 2482913 - | hypothetical protein TERM 3229 2483635 - 2483606 - R 74 -8.9 -3.06129 | opp_overlap 2483611, overlap 2483609 2483621 2483622 ACAATACGATACATA TAATACTTTACTA AACC TAATAAAGTATTA GCCCTAACCTACCAA TERM 3230 2483914 - 2483861 - R 88 -6.4 -5.47218 | gap 1, opp_overlap 2483861 2483864 TTTTAGGCAAAAAAA TAAGCCTATATATTATAATCTACGT GTCCA ACGTTT-TAATAATATATAGGCTTA TTCTATATTTAATAA TERM 3231 2484342 - 2484319 - R 78 -8.2 -3.8969 | TGAGTGATATAATAA GCCCTAAGTT TTTG AACCTAGGAC AATATTATCAAGTAT TERM 3232 2484761 - 2484789 + r 100 -10.5 -6.08342 | TATATTAAGTTTTGG TAACTGGTACTTT GTC AGAGTATCAGTTA TTTTTTTATTTATTA CLL_A2394 2485843 - 2484830 - | DNA integration/recombination protein TERM 3233 2485893 - 2485851 - R 100 -11.7 -5.4505 | opp_overlap 2485851 TTGGGCAACAAAAAA CACCTCCTATTTATTAATT ATTTA AACTAATAAATAAAAGGTG TTTACATAACAAATT spo0A 2486823 - 2486005 - | sporulation transcription factor Spo0A TERM 3234 2487041 - 2487069 + r 89 -9.2 -4.20769 | opp_overlap 2487041 2487046, overlap 2487046 TATAACACGAATTAA TTAAATATAACA TTAAT TGTTATATTTAA TTTATATTCCACTAT TERM 3235 2487069 - 2487041 - R 82 -9.2 -3.4684 | opp_overlap 2487041 2487046, overlap 2487046 TATAACACGAATTAA TTAAATATAACA TTAAT TGTTATATTTAA TTTATATTCCACTAT TERM 3236 2487163 - 2487200 + r 82 -9.6 -3.3341 | gap 1, opp_overlap 2487170, overlap 2487164 2487165 2487170 TCATTATTTTTTTAT TAT-AAAAGCACTAATT ATAAA AATTAGTGCTTTTAATA TTACTACTATTTTAT TERM 3237 2487164 - 2487198 + r 87 -10.3 -3.21981 | opp_overlap 2487170, overlap 2487163 2487165 2487170 CATTATTTTTTTATT ATAAAAGCACTAATT ATAAA AATTAGTGCTTTTAA TATTACTACTATTTT TERM 3238 2487165 - 2487197 + r 100 -13.8 -2.52104 | opp_overlap 2487170, overlap 2487164 2487163 2487170 ATTATTTTTTTATTA TAAAAGCACTAATT ATAAA AATTAGTGCTTTTA ATATTACTACTATTT TERM 3239 2487170 - 2487192 + r 93 -9.3 -4.44797 | opp_overlap 2487170, overlap 2487165 2487164 2487163 TTTTTTATTATAAAA GCACTAATT ATAAA AATTAGTGC TTTTAATATTACTAC TERM 3240 2487192 - 2487170 - R 93 -9.3 -4.46212 | opp_overlap 2487170 2487165 2487164 2487163 TTTTTTATTATAAAA GCACTAATT ATAAA AATTAGTGC TTTTAATATTACTAC spoIVB 2488397 - 2487207 - | stage IV sporulation protein B TERM 3241 2488654 - 2488630 - R 100 -7.3 -6.35605 | opp_overlap 2488630 2488653 TAATATAAAAAAAAA TAAAACCACGT ATT ACATGATTTTA TTTTTACCAAAATAT recN 2490378 - 2488690 - | DNA repair protein RecN argR 2490849 - 2490397 - | arginine repressor CLL_A2399 2491700 - 2490846 - | NAD(+)/NADH kinase CLL_A2400 2492527 - 2491718 - | hemolysin A TERM 3242 2491848 - 2491865 + g 72 -7.1 -3.97356 | opp_overlap 2491848 CCTTTTATTGGAGAA TATCCTA CCCC TAGGATA TTTAAATTTTCATTT dxs 2494403 - 2492544 - | 1-deoxy-D-xylulose-5-phosphate synthase CLL_A2402 2495290 - 2494421 - | geranyltranstransferase TERM 3243 2495093 - 2495103 + g 79 -6.8 -4.78477 | overlap 2495082 CATTTCAATTGCAGC TGCC ATT GGCA TTATTTTTTCTATAT TERM 3244 2495133 - 2495166 + g 72 -5.6 -4.61633 | gap 1, opp_overlap 2495133 TTGTCTTTATATAAA GAATACGT-TAATAT AAGTA ATATTGGACGTATTC TTTTTCCACCTATAT CLL_A2403 2495501 - 2495277 - | hypothetical protein xseA 2496713 - 2495514 - | exodeoxyribonuclease VII, large subunit CLL_A2405 2497551 - 2496703 - | bifunctional protein FolD nusB 2497975 - 2497574 - | transcription antitermination factor NusB TERM 3245 2498082 - 2498060 - R 100 -16.4 -3.68827 | opp_overlap 2498057, overlap 2498072 TATCTAGCATGGAAA CACCCTCTGA AAT TCAGAGGGTG AAATTAGATACTACT CLL_A2407 2498473 - 2498093 - | alkaline shock protein CLL_A2408 2499135 - 2498590 - | stage III sporulation protein AH spoIIIAG 2499804 - 2499175 - | stage III sporulation protein AG TERM 3246 2499595 - 2499610 + g 82 -6.2 -5.10163 | ACCTGAAATAGTCGT TGAAGT GCTT ACTTCA TTTTCTTTTGGACTT CLL_A2410 2500403 - 2499816 - | stage III sporulation protein af, spoiiiaf spoIIIAE 2501663 - 2500407 - | stage III sporulation protein AE spoIIIAD 2502058 - 2501675 - | stage III sporulation protein AD spoIIIAC 2502264 - 2502067 - | stage III sporulation protein AC spoIIIAB 2502797 - 2502279 - | stage III sporulation protein AB spoIIIAA 2503705 - 2502785 - | stage III sporulation protein AA TERM 3247 2503457 - 2503475 + g 70 -7.6 -3.44284 | overlap 2503455 TCCACCTTTAATTGT TATAAAAC CTT GTTTTATA TCTTCTTCATAAGCA TERM 3248 2503807 - 2503783 - R 90 -5.9 -5.95539 | opp_overlap 2503785 TGTTAAATAAAAAAA GATATGTAA AATTAAA TTACATATC TTAAAAATCATATGA TERM 3249 2503917 - 2503906 - R 90 -5.8 -5.93809 | opp_overlap 2503906 2503905 TCTTTATAAAAAAAA TCGC CAAG GCGA CTTTTGAAACGCAGA TERM 3250 2504113 - 2504095 - R 95 -6 -6.01369 | opp_overlap 2504094, overlap 2504096 TAAAGAATAAAAAAA GCCATAGT AAA ACTATGGA CATTAAATATTTATC TERM 3251 2504112 - 2504096 - R 86 -9.5 -4.17161 | opp_overlap 2504094, overlap 2504095 AAAGAATAAAAAAAG CCATAGT AAA ACTATGG ACATTAAATATTTAT CLL_A2416 2504489 - 2504124 - | hypothetical protein TERM 3252 2504507 - 2504548 + r 95 -13.4 -3.0806 | opp_overlap 2504512 2504516, overlap 2504512 2504516 TTTTCACTTCCTTTT ATAAATAAAGTTGCTAAG AAATAA CTTAGCAACTTTATTTAG TATTAAAACTTTAAA TERM 3253 2504543 - 2504512 - R 100 -13.3 -3.85817 | opp_overlap 2504512 2504507 2504516, overlap 2504516 ACTTCCTTTTATAAA TAAAGTTGCTAAG AAATAA CTTAGCAACTTTA TTTAGTATTAAAACT TERM 3254 2504512 - 2504543 + r 100 -13.3 -3.92592 | opp_overlap 2504512 2504516, overlap 2504507 2504516 ACTTCCTTTTATAAA TAAAGTTGCTAAG AAATAA CTTAGCAACTTTA TTTAGTATTAAAACT TERM 3255 2504516 - 2504539 + r 93 -9.7 -4.56883 | opp_overlap 2504512 2504516, overlap 2504512 2504507 CCTTTTATAAATAAA GTTGCTAAG AAATAA CTTAGCAAC TTTATTTAGTATTAA TERM 3256 2504539 - 2504516 - R 93 -9.7 -4.55295 | opp_overlap 2504516 2504512 2504507, overlap 2504512 CCTTTTATAAATAAA GTTGCTAAG AAATAA CTTAGCAAC TTTATTTAGTATTAA efp 2505133 - 2504576 - | translation elongation factor P CLL_A2418 2505704 - 2505324 - | putative lipoprotein CLL_A2419 2506119 - 2505691 - | hypothetical protein CLL_A2420 2506771 - 2506070 - | hypothetical protein CLL_A2421 2507270 - 2506872 - | putative expressed protein CLL_A2422 2507734 - 2507261 - | hypothetical protein CLL_A2423 2508155 - 2507727 - | hypothetical protein CLL_A2424 2508624 - 2508187 - | prepilin-type N- cleavage/methylation domain protein CLL_A2425 2509697 - 2508621 - | putative pilus biogenesis protein CLL_A2426 2510712 - 2509684 - | type II/IV secretion system protein TERM 3257 2510923 - 2510935 + r 91 -4.9 -6.04419 | opp_overlap 2510923 AATCTCATAACCTAA TACAA TAG TTGTA TTTTTTTCTTGTTTT TERM 3258 2511147 - 2511112 - R 100 -10.7 -5.0809 | opp_overlap 2511112 2511106 AATAAATTATAAAAA CACTGAAATAAAAGA TATTAC TCTTTAATTTCAGTG TTTCGCTTTATTCAT TERM 3259 2511112 - 2511147 + r 95 -10.7 -3.93864 | opp_overlap 2511112, overlap 2511106 AATAAATTATAAAAA CACTGAAATAAAAGA TATTAC TCTTTAATTTCAGTG TTTCGCTTTATTCAT CLL_A2427 2512163 - 2511162 - | putative lipoprotein dapF 2513011 - 2512190 - | diaminopimelate epimerase TERM 3260 2514456 - 2514444 - g 74 -6.3 -4.62712 | AAAAAATATAATAAA CTGAA AAT TTCAG AGGAATATGCTAAAT TERM 3261 2514680 - 2514635 - g 78 -2.8 -5.74684 | gap 1 CAATAAAAAGAAAAA GACATCTAAACCA-CACCA TTTTAAATC TAGTGATGGTATAGATATC TACGTTGGTAAGAAT CLL_A2429 2513274 - 2515004 + | fibronectin-binding protein TERM 3262 2515196 - 2515167 - T 79 -5.2 -5.59879 | gap 1, opp_overlap 2515167 2515181 TATAAACAGAAAAAA CGATAAC-CAAAA ATTAA CTTTGAGTTATCG TTTTTTACTTATACT TERM 3263 2515167 - 2515196 + T 76 -4.5 -5.33848 | gap 1, opp_overlap 2515167, overlap 2515181 TATAAACAGAAAAAA CGATAAC-CAAA AATTAAC TTTGAGTTATCG TTTTTTACTTATACT CLL_A2430 2516603 - 2515443 - | methyltransferase CLL_A2431 2517179 - 2516637 - | PyrR bifunctional protein CLL_A2432 2518116 - 2517208 - | ribosomal large subunit pseudouridine synthase D TERM 3264 2518369 - 2518331 - R 100 -9.9 -5.50774 | TATAACAAATAAAAA TACCTTTAAACTGTAAT TATGC ATAACAATTTAAAGGTA AATAGACTTACATAA CLL_A2433 2519013 - 2518393 - | minicell-associated protein CLL_A2434 2519791 - 2519027 - | S4 domain protein CLL_A2435 2520060 - 2519794 - | yggt family protein CLL_A2436 2520530 - 2520069 - | hypothetical protein TERM 3265 2520254 - 2520271 + g 75 -7.1 -4.18191 | opp_overlap 2520253 2520254, overlap 2520251 TTAATTCTAATAAAG TAGTGTT TACT AACACTA TTCTTCTGTTTTTTA CLL_A2437 2521204 - 2520530 - | pyridoxal phosphate enzyme, YggS family CLL_A2438 2522036 - 2521305 - | hypothetical protein CLL_A2439 2522388 - 2522050 - | small basic protein TERM 3266 2522229 - 2522210 - G 75 -3.6 -5.55664 | opp_overlap 2522211, overlap 2522211 GCATTACCAAAAAAA CCAGATAT AAAT ATATCTGT TTGAAAATTTTTAGA TERM 3267 2522228 - 2522211 - G 72 -7.1 -3.92314 | opp_overlap 2522211, overlap 2522210 CATTACCAAAAAAAC CAGATAT AAAT ATATCTG TTTGAAAATTTTTAG CLL_A2440 2523137 - 2522409 - | division initiation protein CLL_A2441 2523818 - 2523153 - | putative cell division protein FtsQ TERM 3268 2524105 - 2524050 - R 100 -11.8 -5.35721 | gap 1, opp_overlap 2524058 2524060, overlap 2524060 ACATAATAAGAAAAA TTTAATAAA-ATAAGAGTCATAATTAT TAA AAAATTATGACTCTTATCTTTATTTAA GAATATGTTTTTAAG TERM 3269 2524058 - 2524096 + r 100 -10.6 -4.43208 | opp_overlap 2524050 2524060, overlap 2524060 AGAAAAATTTAATAA AATAAGAGTCATAATTAT TAA AAAATTATGACTCTTATC TTTATTTAAGAATAT TERM 3270 2524060 - 2524094 + r 100 -13.2 -3.81958 | opp_overlap 2524050 2524060, overlap 2524058 AAAAATTTAATAAAA TAAGAGTCATAATTAT TAA AAAATTATGACTCTTA TCTTTATTTAAGAAT TERM 3271 2524094 - 2524060 - R 100 -13.2 -4.79075 | opp_overlap 2524060 2524058, overlap 2524050 AAAAATTTAATAAAA TAAGAGTCATAATTAT TAA AAAATTATGACTCTTA TCTTTATTTAAGAAT ftsW 2525283 - 2524159 - | cell division protein FtsW mraY 2526399 - 2525425 - | phospho-N-acetylmuramoyl-pentapeptide-transferase murF 2527801 - 2526440 - | UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase murE 2529275 - 2527821 - | UDP-N-acetylmuramyl-tripeptide synthetase TERM 3272 2529379 - 2529349 - R 100 -14.2 -3.81 | opp_overlap 2529348 2529347 ATTATTTTACAATAA TTTAGCATGTGAGC AAA ACCCACATGCTAAA AATTTAACTTAAGTA CLL_A2446 2531659 - 2529401 - | stage V sporulation protein D CLL_A2447 2532324 - 2531812 - | putative cell division protein FtsL mraW 2533294 - 2532362 - | S-adenosyl-methyltransferase MraW TERM 3273 2532458 - 2532469 + g 73 -4.4 -5.00884 | overlap 2532455 2532454 TTTTCTAGATATTAG CCTA ACGC TAGG TTTTTTGCCGCAAAT mraZ 2533735 - 2533307 - | MraZ protein TERM 3274 2533812 - 2533840 + r 75 -7.8 -3.94746 | opp_overlap 2533817 CACTTTAAACCACTT TATAATATTTAT TCTAT ATAAATATTATA TTTCCTTCCATATAC CLL_A2450 2534187 - 2533906 - | hypothetical protein TERM 3275 2534054 - 2534042 - G 84 -3.5 -5.8096 | opp_overlap 2534042 TATAAAAAATAAAAA TATAT TAT ATATA CATTAAATAAGACTA TERM 3276 2534341 - 2534375 + r 78 -6 -4.93365 | opp_overlap 2534348, overlap 2534342 TGTGGTATGACATTT CCTAATATATTTTATA GTA TAGAAAATATATTAGA TTTTTAATTGTAGAA TERM 3277 2534342 - 2534374 + r 83 -9.5 -3.55296 | opp_overlap 2534348, overlap 2534341 GTGGTATGACATTTC CTAATATATTTTATA GTA TAGAAAATATATTAG ATTTTTAATTGTAGA CLL_A2451 2535368 - 2534532 - | integral membrane protein TerC TERM 3278 2534593 - 2534582 - G 70 -3 -5.19998 | ATAATGAAAATAAAA TACT TGTA AGTA ATATAATCATAATTA TERM 3279 2534893 - 2534883 - G 73 -5.4 -4.76233 | TAATAAAACAACAAA CAAC GGG GTTG CATAAAGAATTTTAT TERM 3280 2535457 - 2535494 + r 100 -11.6 -4.89477 | opp_overlap 2535460 2535465, overlap 2535465 GTTTAATTTTTTTAA TAATAAAAGGAACCCT CAAACA AAGGTTCCTTTTATTA TTTTATTATTAAAAA TERM 3281 2535491 - 2535460 - R 95 -11.8 -3.62522 | opp_overlap 2535457 2535465, overlap 2535465 TAATTTTTTTAATAA TAAAAGGAACCCTC AAAC AAAGGTTCCTTTTA TTATTTTATTATTAA TERM 3282 2535465 - 2535486 + r 73 -4.4 -5.14949 | opp_overlap 2535465 2535460, overlap 2535457 TTTTTAATAATAAAA GGAACCCT CAAACA AAGGTTCC TTTTATTATTTTATT TERM 3283 2535486 - 2535465 - R 81 -7.3 -4.89477 | opp_overlap 2535457 2535465, overlap 2535460 TTTTTAATAATAAAA GGAACCCTC AAAC AAAGGTTCC TTTTATTATTTTATT ychF 2536614 - 2535517 - | GTP-binding protein YchF pdaA 2536976 - 2537899 + | delta-lactam-biosynthetic de-N-acetylase TERM 3284 2537940 - 2537987 + T 93 -11 -3.37487 | opp_overlap 2537945, overlap 2537945 TGCTTTTAAATATAT AAAAAGGAACTATGTATAAT TTTTATTC ATTATGCATAGTTCCTTTTC TATTTAAGACTGTAA TERM 3285 2537982 - 2537945 - T 100 -8.7 -5.14985 | opp_overlap 2537945 2537940 TTAAATATATAAAAA GGAACTATGTATAAT TTTTATTC ATTATGCATAGTTCC TTTTCTATTTAAGAC TERM 3286 2537945 - 2537982 + T 100 -10.9 -4.78848 | opp_overlap 2537945, overlap 2537940 TTAAATATATAAAAA GGAACTATGTATAAT TTTTATTC ATTATGCATAGTTCC TTTTCTATTTAAGAC CLL_A2454 2538931 - 2538281 - | methenyltetrahydrofolate cyclohydrolase TERM 3287 2538895 - 2538912 + g 72 -5.7 -4.56969 | CACTTTCTACATCCC CAATAAA TTCT TTTATTG TTTGTTTATAAAATT CLL_A2455 2540182 - 2538944 - | O-antigen polymerase family CLL_A2456 2541326 - 2540163 - | glycosyl transferase, group 1 CLL_A2457 2542615 - 2541332 - | hypothetical protein mviN 2544159 - 2542627 - | integral membrane protein MviN CLL_A2459 2544878 - 2544165 - | glycosyl transferase, WecB/TagA/CpsF family CLL_A2460 2546864 - 2545776 - | TPR domain protein TERM 3288 2546945 - 2546910 - R 85 -8.5 -4.68724 | opp_overlap 2546898, overlap 2546903 2546898 GTATTTAAGACAAAA GCTGTCTCAAATGAT TATTAT ATCACTTAAAACAGC TTATTTGTAGAATTA CLL_A2461 2548690 - 2546963 - | phosphomannomutase CLL_A2462 2549588 - 2548854 - | purine nucleoside phosphorylase TERM 3289 2549796 - 2549772 - R 95 -11.6 -3.67622 | overlap 2549768 GATTGTCAAAAGTAA GTGTCCAAAT TTTAT ATTTGGACAC ACGAACTTTCACACA CLL_A2463 2552286 - 2549929 - | MutS2 family protein TERM 3290 2552030 - 2552046 + g 74 -5.1 -5.18561 | TTTAATAGTTGTTCT GGAGTTA ATG TACCTCC TTTTTTCGCTCTTTG CLL_A2464 2554645 - 2552300 - | peptidase, U32 family TERM 3291 2553168 - 2553181 + g 70 -5.3 -4.48903 | opp_overlap 2553152 2553168, overlap 2553152 2553163 CTTCTTCGTCTATAA GAAGA TATT TCTTC TTTTAATATCTTTTC TERM 3292 2554833 - 2554795 - R 100 -12.8 -4.60487 | opp_overlap 2554796 2554797 2554805, overlap 2554796 2554797 2554805 TATTATTCTTAAAAA CCTTTAAAAACTGCTATT AAA AATAGCAGTTTTTAAAAT TGTTATAATTCTATT TERM 3293 2554796 - 2554832 + r 100 -14.1 -3.91959 | opp_overlap 2554795 2554796 2554797 2554805, overlap 2554797 2554805 ATTATTCTTAAAAAC CTTTAAAAACTGCTATT AAA AATAGCAGTTTTTAAAA TTGTTATAATTCTAT TERM 3294 2554832 - 2554796 - R 100 -16.3 -3.3581 | opp_overlap 2554796 2554797 2554805, overlap 2554795 2554797 2554805 ATTATTCTTAAAAAC CTTTAAAAACTGCTATT AAA AATAGCAGTTTTTAAAA TTGTTATAATTCTAT TERM 3295 2554831 - 2554797 - R 100 -17.6 -2.61004 | opp_overlap 2554797 2554796 2554805, overlap 2554796 2554795 2554805 TTATTCTTAAAAACC TTTAAAAACTGCTATT AAA AATAGCAGTTTTTAAA ATTGTTATAATTCTA TERM 3296 2554797 - 2554831 + r 100 -17.6 -2.94091 | opp_overlap 2554796 2554795 2554797 2554805, overlap 2554796 2554805 TTATTCTTAAAAACC TTTAAAAACTGCTATT AAA AATAGCAGTTTTTAAA ATTGTTATAATTCTA TERM 3297 2554823 - 2554805 - R 100 -10.4 -4.67168 | opp_overlap 2554805 2554797 2554796, overlap 2554797 2554796 2554795 AAAAACCTTTAAAAA CTGCTATT AAA AATAGCAG TTTTTAAAATTGTTA TERM 3298 2554805 - 2554823 + r 100 -10.4 -4.70626 | opp_overlap 2554797 2554796 2554795 2554805, overlap 2554797 2554796 AAAAACCTTTAAAAA CTGCTATT AAA AATAGCAG TTTTTAAAATTGTTA CLL_A2465 2556452 - 2554857 - | hypothetical protein TERM 3299 2555597 - 2555611 + g 73 -2.9 -5.40004 | TATACTCTTCTTGAA GTAAT TGTTT ATTAC TTTTTTCATTTGATA TERM 3300 2556010 - 2556021 + g 93 -3 -6.32976 | AATTTAGTATTTTTT TCTA ACAG TAGA TTTTTTTCTTTTTTT TERM 3301 2556629 - 2556672 + r 75 -8.6 -3.61175 | opp_overlap 2556632 2556636 2556643, overlap 2556627 2556636 ATTTTTACAGTCGAA TTATAAATATAAAACATTAA ATTT TCAATGTTTCATATTTATAA TATTTATGCTATATA TERM 3302 2556669 - 2556632 - R 81 -10.3 -2.74563 | opp_overlap 2556629 2556627 2556636, overlap 2556636 2556643 TTTACAGTCGAATTA TAAATATAAAACATTAA ATTT TCAATGTTTCATATTTA TAATATTTATGCTAT TERM 3303 2556665 - 2556636 - R 71 -6.7 -4.0616 | opp_overlap 2556629 2556627 2556636, overlap 2556632 2556643 CAGTCGAATTATAAA TATAAAACATTAA ATTT TCAATGTTTCATA TTTATAATATTTATG TERM 3304 2556690 - 2556744 + r 95 -11.8 -3.81951 | opp_overlap 2556692 2556693, overlap 2556692 2556693 2556695 2556698 2556701 TTTATGCTATATAAA AATTATAAGAACCAAGAGATAACTTT TTT AATTTTATCTCTTGGTTCTTATACTC TTTACTAATATAAAA TERM 3305 2556692 - 2556742 + r 100 -14.4 -3.49482 | opp_overlap 2556692 2556693, overlap 2556690 2556693 2556695 2556698 2556701 TATGCTATATAAAAA TTATAAGAACCAAGAGATAACTTT TTT AATTTTATCTCTTGGTTCTTATAC TCTTTACTAATATAA TERM 3306 2556742 - 2556692 - R 100 -14.4 -4.9792 | opp_overlap 2556692 2556690 2556693 2556695 2556698 2556701, overlap 2556693 TATGCTATATAAAAA TTATAAGAACCAAGAGATAACTTT TTT AATTTTATCTCTTGGTTCTTATAC TCTTTACTAATATAA TERM 3307 2556693 - 2556741 + r 100 -17.9 -2.69207 | opp_overlap 2556692 2556693, overlap 2556692 2556690 2556695 2556698 2556701 ATGCTATATAAAAAT TATAAGAACCAAGAGATAACTTT TTT AATTTTATCTCTTGGTTCTTATA CTCTTTACTAATATA TERM 3308 2556741 - 2556693 - R 100 -17.9 -3.58029 | opp_overlap 2556693 2556692 2556690 2556695 2556698 2556701, overlap 2556692 ATGCTATATAAAAAT TATAAGAACCAAGAGATAACTTT TTT AATTTTATCTCTTGGTTCTTATA CTCTTTACTAATATA TERM 3309 2556695 - 2556739 + r 100 -16.1 -2.88215 | opp_overlap 2556693 2556692, overlap 2556693 2556692 2556690 2556698 2556701 GCTATATAAAAATTA TAAGAACCAAGAGATAACTTT TTT AATTTTATCTCTTGGTTCTTA TACTCTTTACTAATA TERM 3310 2556698 - 2556736 + r 100 -13.4 -3.57908 | opp_overlap 2556693 2556692, overlap 2556695 2556693 2556692 2556690 2556701 ATATAAAAATTATAA GAACCAAGAGATAACTTT TTT AATTTTATCTCTTGGTTC TTATACTCTTTACTA TERM 3311 2556701 - 2556733 + r 86 -9.3 -3.90897 | opp_overlap 2556693 2556692, overlap 2556698 2556695 2556693 2556692 2556690 TAAAAATTATAAGAA CCAAGAGATAACTTT TTT AATTTTATCTCTTGG TTCTTATACTCTTTA CLL_A2466 2556908 - 2556762 - | hypothetical protein CLL_A2467 2557212 - 2558459 + | permease of the major facilitator superfamily TERM 3312 2558449 - 2558488 + T 100 -9.6 -5.31275 | opp_overlap 2558450 2558453 2558456, overlap 2558450 2558453 ATATATCTTCATATA ATAAGAAGTAATAAGATT CTAA ACTCTTATTACTTCTTAA TTTTTTATAATGGGC TERM 3313 2558450 - 2558487 + T 100 -13.1 -3.78042 | opp_overlap 2558450 2558453 2558456, overlap 2558449 2558453 TATATCTTCATATAA TAAGAAGTAATAAGATT CTAA ACTCTTATTACTTCTTA ATTTTTTATAATGGG TERM 3314 2558487 - 2558450 - T 100 -13.1 -3.49951 | opp_overlap 2558449 2558450 2558453, overlap 2558453 2558456 TATATCTTCATATAA TAAGAAGTAATAAGATT CTAA ACTCTTATTACTTCTTA ATTTTTTATAATGGG TERM 3315 2558484 - 2558453 - T 95 -10.4 -3.885 | opp_overlap 2558450 2558449 2558453, overlap 2558450 2558456 ATCTTCATATAATAA GAAGTAATAAGATT CTAA ACTCTTATTACTTC TTAATTTTTTATAAT TERM 3316 2558453 - 2558484 + T 95 -10.4 -4.0014 | opp_overlap 2558453 2558450 2558456, overlap 2558450 2558449 ATCTTCATATAATAA GAAGTAATAAGATT CTAA ACTCTTATTACTTC TTAATTTTTTATAAT CLL_A2468 2559523 - 2558576 - | metallo-beta-lactamase family protein TERM 3317 2559652 - 2559605 - R 77 -8.8 -3.46088 | overlap 2559603 ATATTTTACTAAATA TGTACTGATATATGCAATAA TTAAAGTG TCACTGCATATATCAACACA TTACTAAAACATGTC CLL_A2469 2560490 - 2559675 - | mechanosensitive ion channel family protein TERM 3318 2560593 - 2560605 + r 73 -3.5 -5.58179 | overlap 2560602 AATATAGTCTATTGA TTTAA TAT TTAAA TTTTTTATTCTAATA CLL_A2470 2561527 - 2560610 - | muramoyltetrapeptide carboxypeptidase TERM 3319 2561458 - 2561487 + g 71 -8.7 -2.93768 | overlap 2561457 ATTCTAATCTTTCTT CTGTTGTAGGACT AGAT AATCCTACAATAG CTATTTTATCTCCTT TERM 3320 2561706 - 2561674 - R 90 -10 -3.76775 | opp_overlap 2561669 2561668 TTTAACATATTTAAA GGCTAAAAGCTAGA TATAT TCCAACTTTCAGCC TTAAAGATTTTTATA TERM 3321 2561767 - 2561742 - R 100 -9.1 -5.22312 | opp_overlap 2561742 2561737 2561745, overlap 2561745 2561756 ATTTACATTAAAAAA GGATGTCTTAG AATT CTAAGACATTC TTAAATTTATATTAT TERM 3322 2561742 - 2561767 + r 93 -11.3 -3.38484 | opp_overlap 2561742 2561745 2561756, overlap 2561737 2561745 ATTTACATTAAAAAA GGATGTCTTAG AATT CTAAGACATTC TTAAATTTATATTAT TERM 3323 2561745 - 2561764 + r 84 -9.4 -3.80622 | opp_overlap 2561742 2561745 2561756, overlap 2561742 2561737 TACATTAAAAAAGGA TGTCTTAG AATT CTAAGACA TTCTTAAATTTATAT TERM 3324 2561764 - 2561745 - R 82 -9.4 -3.43308 | opp_overlap 2561745 2561742 2561737, overlap 2561742 2561756 TACATTAAAAAAGGA TGTCTTAG AATT CTAAGACA TTCTTAAATTTATAT CLL_A2471 2563539 - 2561779 - | chitinase B TERM 3325 2564088 - 2564065 - R 86 -5.4 -5.71712 | opp_overlap 2564065 2564069 CTTTATAGAAAAAAA CATAGAGA TTCCTATC TCTCTATG CTTCTGCTATTATAG TERM 3326 2564256 - 2564226 - R 100 -7.1 -6.06529 | opp_overlap 2564226 2564224 TATACATAAAAAAAA TGACTAGATTT AAGTTTACA AAATCTAGTCA TCTGTATTTTCAATA pheT 2566650 - 2564275 - | phenylalanyl-tRNA synthetase, beta subunit pheS 2567789 - 2566770 - | phenylalanyl-tRNA synthetase, alpha subunit TERM 3327 2567850 - 2567828 - R 100 -10.6 -5.64274 | opp_overlap 2567828 2567827, overlap 2567848 TTATGTACAAAAAAA TCGTCCCCCT ATA AAAGGGACGA ATTATCCGCGTTACC CLL_A2474 2568903 - 2568121 - | RNA methyltransferase, TrmH family CLL_A2475 2569586 - 2568918 - | potassium uptake protein CLL_A2476 2570949 - 2569600 - | potassium uptake protein, TrkH family TERM 3328 2570442 - 2570423 - G 81 -7.2 -4.72863 | overlap 2570424 CCAAATAAATCAAAA CCAGCATT ACAA AATGCTGA AATAGAATGAAATAT TERM 3329 2570441 - 2570424 - G 75 -8.5 -3.42091 | overlap 2570423 CAAATAAATCAAAAC CAGCATT ACAA AATGCTG AAATAGAATGAAATA TERM 3330 2571100 - 2571068 - R 82 -10.2 -3.07522 | gap 1, opp_overlap 2571077, overlap 2571077 ATATTTTTCAATATA TAATAAAAATGCGAC CTAA GTCGCA-TTTTATTA AGCGTTTAATTGTTT TERM 3331 2571092 - 2571077 - R 100 -9 -5.28561 | opp_overlap 2571077, overlap 2571068 AATATATAATAAAAA TGCGAC CTAA GTCGCA TTTTATTAAGCGTTT TERM 3332 2571077 - 2571092 + r 89 -9 -4.6635 | opp_overlap 2571077 2571068 AATATATAATAAAAA TGCGAC CTAA GTCGCA TTTTATTAAGCGTTT rplT 2571457 - 2571098 - | ribosomal protein L20 rpmI 2571683 - 2571486 - | ribosomal protein L35 TERM 3333 2571550 - 2571565 + g 70 -6.2 -4.14874 | ACGTATCCACCTTTT CTAAGA TTTC TCTTAG TTTTAGGACTCTTCT infC 2572226 - 2571705 - | translation initiation factor IF-3 TERM 3334 2572270 - 2572254 - R 100 -10.1 -4.87592 | opp_overlap 2572256 TTATACATAATAAAA GACGGCC ATA AGCCGTC TTACACTATCACTAT CLL_A2480 2573291 - 2572383 - | putative sporulation protein YtxC TERM 3335 2572774 - 2572786 + g 83 -4.9 -5.57729 | TCCTTTTCAACAATG TAGTT TTC AACTA TTTTTTGTATTATTT CLL_A2481 2573444 - 2574148 + | hypothetical protein TERM 3336 2574307 - 2574360 + T 80 -8.6 -4.19735 | opp_overlap 2574304 2574307 2574320 2574358, overlap 2574320 2574352 TATTCCTTATAATAT TAAAAATAAAAAATGTACTTTAAC TCAAAC GTCAAAGTACATTTTTTAAATTTA TTTAATTTTAAAACA TERM 3337 2574360 - 2574307 - T 81 -10.8 -2.5294 | opp_overlap 2574307 2574320 2574352, overlap 2574304 2574320 2574358 TATTCCTTATAATAT TAAAAATAAAAAATGTACTTTAAC TCAAAC GTCAAAGTACATTTTTTAAATTTA TTTAATTTTAAAACA TERM 3338 2574347 - 2574320 - T 100 -7.9 -5.95286 | opp_overlap 2574320 2574307, overlap 2574307 ATTAAAAATAAAAAA TGTACTTTAAC TCAAAC GTCAAAGTACA TTTTTTAAATTTATT TERM 3339 2574320 - 2574347 + T 78 -5.7 -5.25805 | opp_overlap 2574307 2574320, overlap 2574307 ATTAAAAATAAAAAA TGTACTTTAAC TCAAAC GTCAAAGTACA TTTTTTAAATTTATT hslO 2575314 - 2574427 - | chaperonin HslO CLL_A2483 2576069 - 2575332 - | S-adenosylmethionine-dependent methyltransferase CLL_A2484 2576613 - 2576344 - | small, acid-soluble spore protein, alpha/beta family asd 2576887 - 2577879 + | aspartate-semialdehyde dehydrogenase TERM 3340 2578378 - 2578366 - g 77 -4.9 -5.33848 | AGCAGAATTAAAAAA TATAG TTG CTATA AAAGAAGCTAGCGGA dapA 2577896 - 2578774 + | dihydrodipicolinate synthase dapB 2578784 - 2579542 + | dihydrodipicolinate reductase TERM 3341 2579570 - 2579592 + T 100 -13.6 -5.47431 | opp_overlap 2579570 TTAAATTCAAAAAAA GAGGAGATTT TAA AAATCTCCTC TTTTTTATCTATTCA TERM 3342 2579592 - 2579570 - T 100 -13.6 -5.58209 | opp_overlap 2579570 TTAAATTCAAAAAAA GAGGAGATTT TAA AAATCTCCTC TTTTTTATCTATTCA CLL_A2488 2581379 - 2579730 - | oligopeptide-binding protein OppA TERM 3343 2580348 - 2580360 + g 72 -3.4 -5.27399 | opp_overlap 2580340 2580339, overlap 2580340 GACAAATCCAGTTGC TGGT GTTGA ACCA TTTTTTAGTATATTA TERM 3344 2581534 - 2581488 - R 75 -7.7 -3.885 | gap 1, opp_overlap 2581493 2581494, overlap 2581495 AGCCTTAGATAACAA TTTTAAATTT-CAGATGAAGCT TTTT AACTTCATCTGAAAACTTATAA TCCTATTTTATTATA TERM 3345 2581526 - 2581495 - R 100 -14 -3.73122 | opp_overlap 2581494 2581493, overlap 2581488 GATAACAATTTTAAA TTTCAGATGAAGCT TTTT AACTTCATCTGAAA ACTTATAATCCTATT CLL_A2489 2582552 - 2581572 - | oligopeptide transport ATP-binding protein AppF CLL_A2490 2583562 - 2582552 - | oligopeptide transport ATP-binding protein OppD TERM 3346 2582941 - 2582953 + g 71 -2.7 -5.48213 | opp_overlap 2582942, overlap 2582942 GAGTAATTAATATAA TTGAA GTA TTCAG TTTTTCTTTTAAATC TERM 3347 2583268 - 2583292 + g 73 -8.7 -2.98173 | opp_overlap 2583270, overlap 2583267 2583272 TTAATGATGTCATAG GATCTTGGAAT ATC ATTCCAATATC ATTTCCTCTTATACT TERM 3348 2583272 - 2583288 + g 70 -8.1 -3.0623 | opp_overlap 2583270, overlap 2583268 2583267 TGATGTCATAGGATC TTGGAAT ATC ATTCCAA TATCATTTCCTCTTA CLL_A2491 2584519 - 2583575 - | oligopeptide transport system permease protein OppC TERM 3349 2583705 - 2583733 + g 71 -7.5 -3.53012 | opp_overlap 2583723 TATATTGCTTTCATA GCTTCATTAGCTA AAG TACCTAATGATGC TTTAGGCGGAACAAG TERM 3350 2583895 - 2583910 + g 72 -6.2 -4.35682 | opp_overlap 2583875, overlap 2583892 CTAAAGCTTTTGCTG CAAGAA CAAA TTCTTG TTGTTTTAATTGTAA CLL_A2492 2585464 - 2584538 - | oligopeptide transport system permease protein OppB CLL_A2493 2585451 - 2585582 + | hypothetical protein TERM 3351 2585940 - 2585997 + Tr 80 -10.2 -2.83677 | opp_overlap 2585946, overlap 2585943 2585956 TAGCCTTATAATAAT TAAAAATTGCTTCATATGTATATGGA GCATAA TCCATATACATTTGAAGCAATAATAA TGTGCTAAATTACTT TERM 3352 2585943 - 2585994 + Tr 86 -11.9 -2.67441 | opp_overlap 2585946, overlap 2585940 2585956 CCTTATAATAATTAA AAATTGCTTCATATGTATATGGA GCATAA TCCATATACATTTGAAGCAATAA TAATGTGCTAAATTA TERM 3353 2585991 - 2585946 - TR 100 -18 -5.01845 | opp_overlap 2585943 2585940 2585956 TATAATAATTAAAAA TTGCTTCATATGTATATGGA GCATAA TCCATATACATTTGAAGCAA TAATAATGTGCTAAA TERM 3354 2585956 - 2585981 + Tr 83 -9.2 -3.54741 | opp_overlap 2585946, overlap 2585943 2585940 AAAAATTGCTTCATA TGTATATGGA GCATAA TCCATATACA TTTGAAGCAATAATA oppA 2587680 - 2586007 - | oligopeptide ABC transporter, periplasmic oligopeptide-binding protein TERM 3355 2587050 - 2587060 + g 70 -6.8 -3.91911 | TCTCAGCAGTATTTG CCCA AGT TGGG TTTGATTCAACTAAA TERM 3356 2587421 - 2587437 + g 70 -5.1 -4.70107 | ACATCCCATTTTTCT GCTACTC CTG GAATAGC TTTATTATTTTCATC TERM 3357 2587796 - 2587810 + r 73 -2.9 -5.75538 | TTATATAATATTTTA TGTTT TTGTC AAACA TTTTTCTTTTTTAGC TERM 3358 2587991 - 2587947 - R 100 -11.1 -4.59109 | opp_overlap 2587941 2587947 TATATTTTTTAAAAA GCATTTAATATTTACAATCAA TAA CCGAGTATAAATATTAAATGC TTCTAATTATATTTT TERM 3359 2587947 - 2587991 + r 72 -7.5 -3.6372 | opp_overlap 2587947, overlap 2587941 TATATTTTTTAAAAA GCATTTAATATTTACAATC AATAACC GAGTATAAATATTAAATGC TTCTAATTATATTTT CLL_A2495 2589275 - 2588136 - | putative aminotransferase A TERM 3360 2588261 - 2588239 - G 80 -9.2 -3.6502 | TACCCTTCACCTAAA GTTCCAAAAG CAT CTCCTGGAAC ACAAGCTAATTTTTC dapD 2589694 - 2590404 + | 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase TERM 3361 2590456 - 2590402 - T 100 -14.9 -4.69053 | gap 1, opp_overlap 2590411 2590417, overlap 2590404 2590411 GATGATCTAAGAAAA TAGTACATATGAAAAGAGGATTTCTT AATT AAGAAATCCTCTTTTCATTTATA-TA TTAATTGTTTTAAAC TERM 3362 2590455 - 2590404 - T 100 -15.6 -3.95554 | opp_overlap 2590411 2590417, overlap 2590402 2590411 TGATCTAAGAAAATA GTACATATGAAAAGAGGATTTCTT AATT AAGAAATCCTCTTTTCATTTATAT ATTAATTGTTTTAAA TERM 3363 2590411 - 2590448 + T 100 -20.3 -4.24534 | opp_overlap 2590404 2590402 2590411, overlap 2590417 AGAAAATAGTACATA TGAAAAGAGGATTTCTT AATT AAGAAATCCTCTTTTCA TTTATATATTAATTG TERM 3364 2590448 - 2590411 - T 100 -20.3 -3.0641 | opp_overlap 2590411 2590417, overlap 2590404 2590402 AGAAAATAGTACATA TGAAAAGAGGATTTCTT AATT AAGAAATCCTCTTTTCA TTTATATATTAATTG TERM 3365 2590417 - 2590442 + T 100 -13.5 -4.66057 | opp_overlap 2590411 2590404 2590402, overlap 2590411 TAGTACATATGAAAA GAGGATTTCTT AATT AAGAAATCCTC TTTTCATTTATATAT CLL_A2497 2591116 - 2590466 - | single-strand binding domain protein CLL_A2498 2591976 - 2591215 - | chitooligosaccharide deacetylase TERM 3366 2591304 - 2591316 + g 74 -6.3 -4.60073 | overlap 2591302 TAAATTCATAACCTT GAGTT TTC AACTC TTTTATAATTCTCTC TERM 3367 2591329 - 2591345 + g 82 -9.5 -3.45395 | opp_overlap 2591325, overlap 2591328 CTCTTTTATAATTCT CTCCAAA TTA TTTGGAG TATATTTTGCATTAT CLL_A2500 2592105 - 2592638 + | hypothetical protein TERM 3368 2592676 - 2592646 - T 72 -8.4 -3.24414 | opp_overlap 2592646, overlap 2592645 ATTCTTAATTAAAAG CATAGCATTAGG TTCTTTT CCTATTGCTATG TTTTTTATTATCCTG TERM 3369 2592646 - 2592676 + T 100 -8.4 -5.58179 | opp_overlap 2592646 2592645 ATTCTTAATTAAAAG CATAGCATTAGG TTCTTTT CCTATTGCTATG TTTTTTATTATCCTG CLL_A2499 2593515 - 2592622 - | hypothetical protein TERM 3370 2593757 - 2593747 - g 71 -4 -5.093 | TTGAAAATAATAAAA TACA AAC TGTA AATTTCATTGGTGGA CLL_A2501 2593680 - 2593928 + | hypothetical protein TERM 3371 2593964 - 2593936 - T 100 -10.4 -5.4505 | opp_overlap 2593936 GTTGTTAAGAAAAAA TGGTGTATCGTA AAAAA TTCGATACACCA TTTTTTCATTGTAAA TERM 3372 2593936 - 2593964 + T 100 -10.4 -5.32944 | opp_overlap 2593936 GTTGTTAAGAAAAAA TGGTGTATCGTA AAAAA TTCGATACACCA TTTTTTCATTGTAAA CLL_A2502 2595940 - 2593970 - | hiran domain family CLL_A2503 2597300 - 2595987 - | folylpolyglutamate synthase TERM 3373 2596358 - 2596373 + g 95 -6.2 -5.68438 | TATTGTGTGCTCCAT CCATTA CAAT TAATGG TTTTTTATTTAATAC TERM 3374 2596806 - 2596836 + g 84 -9.2 -3.91144 | opp_overlap 2596806 ATCAAAGCTAATTGA TGTAATAACACTAA CAA TTGGAGTTATTACA TTTGTAGAATCTAAC CLL_A2504 2597788 - 2597468 - | hypothetical protein TERM 3375 2597946 - 2597918 - R 100 -10.4 -5.64304 | TAACATAATAAAAAA GTTGTACGCACA TTAAT CATGCGTACAAC ACTACTTAAAATTAC valS 2600746 - 2598104 - | valyl-tRNA synthetase TERM 3376 2600437 - 2600449 + g 70 -7.7 -3.34192 | CTTTTTTATTGTAAC CTTGC TTA GCAAG TTCATTAGCAACCTT TERM 3377 2600717 - 2600729 + g 74 -2.7 -5.72622 | TTCTTTTGGATCATA TGTTG TTG CAATA TTTTTTGTTTCTGAC aspS 2602867 - 2601578 - | aspartyl-tRNA synthetase TERM 3378 2602934 - 2602966 + r 93 -10 -3.87815 | gap 1, opp_overlap 2602934 TATAAGAAAAAAAAA TTCGCCCC-TATGCT TTTT AACATAAGGGGCGAA TTTATCGCGGTACCA TERM 3379 2602966 - 2602934 - R 100 -12.2 -6.41881 | gap 1, opp_overlap 2602934 TATAAGAAAAAAAAA TTCGCCCC-TATGCT TTTT AACATAAGGGGCGAA TTTATCGCGGTACCA TERM 3380 2603115 - 2603089 - R 100 -14.6 -5.30189 | opp_overlap 2603089, overlap 2603108 TATAACATCAAAAAA GCTTCCACTTCT TAT AGAAGTGAAAGC TATGCTTCACGGTAC TERM 3381 2603089 - 2603115 + r 89 -12.4 -2.90723 | opp_overlap 2603089 2603108 TATAACATCAAAAAA GCTTCCACTTCT TAT AGAAGTGAAAGC TATGCTTCACGGTAC CLL_A2507 2604235 - 2603375 - | LD-carboxypeptidase family protein TERM 3382 2604430 - 2604451 + H 73 -3.1 -5.49234 | AATTATATTTTTTCA CTTATTAAT GGTC AATAATAAG TTTTTTATTAGCTCT TERM 3383 2604613 - 2604625 + H 72 -4.9 -4.91429 | TCCTATATACACTTG CTTTA ACT TAAAG TTTTGTTTACAATTT CLL_A2508 2604740 - 2605711 + | bactoprenol glucosyl transferase TERM 3384 2605932 - 2605911 - g 79 -8.9 -3.46647 | opp_overlap 2605911 2605922 2605924, overlap 2605909 CGTATTTATTAAATA GTTTCTTTA CATT TAAAGAAAC TTTAGATTTTAATAA TERM 3385 2605911 - 2605932 + G 84 -8.9 -3.94846 | opp_overlap 2605911 2605909, overlap 2605922 2605924 CGTATTTATTAAATA GTTTCTTTA CATT TAAAGAAAC TTTAGATTTTAATAA CLL_A2509 2605721 - 2606128 + | putative GtrA family protein TERM 3386 2606137 - 2606182 + T 100 -10.2 -5.1485 | gap 1, opp_overlap 2606142, overlap 2606142 ACAATGATATAAATA AAAAAGTTACTACATGATAAA TATAC TTTA-CATGTAGTAACTTTTA TTTTTATATTAATTA TERM 3387 2606142 - 2606177 + T 100 -10.1 -5.40873 | gap 1, opp_overlap 2606142, overlap 2606137 GATATAAATAAAAAA GTTACTACATGATAAA TATAC TTTA-CATGTAGTAAC TTTTATTTTTATATT TERM 3388 2606177 - 2606142 - T 100 -10.1 -5.76237 | gap 1, opp_overlap 2606137 2606142 GATATAAATAAAAAA GTTACTACATGATAAA TATAC TTTA-CATGTAGTAAC TTTTATTTTTATATT CLL_A2510 2607390 - 2606227 - | NADH-dependent butanol dehydrogenase a TERM 3389 2606872 - 2606888 + g 72 -5.9 -4.5442 | TTCTGGATCTAATAT TGAAACT TTA GGTTTCA TTTTATCATTGCCAA CLL_A2511 2608301 - 2607621 - | ribosomal large subunit pseudouridine synthase F CLL_A2512 2609927 - 2608395 - | sensor histidine kinase/response regulator uvdE 2611099 - 2610137 - | UV damage endonuclease UvdE CLL_A2514 2611294 - 2611130 - | hypothetical protein TERM 3390 2611221 - 2611266 + g 100 -12.3 -4.29981 | opp_overlap 2611224, overlap 2611224 2611265 TACCAAGGCATAAAT AAACACATCCTTATAAAAT TTATTCTT ATTTTATAAGGATGTGTTA TTTTAAATATATTTA TERM 3391 2611263 - 2611224 - G 100 -14 -4.59089 | opp_overlap 2611221 2611224 CAAGGCATAAATAAA CACATCCTTATAAAAT TTATTCTT ATTTTATAAGGATGTG TTATTTTAAATATAT TERM 3392 2611224 - 2611263 + g 100 -14 -4.24602 | opp_overlap 2611224, overlap 2611221 CAAGGCATAAATAAA CACATCCTTATAAAAT TTATTCTT ATTTTATAAGGATGTG TTATTTTAAATATAT CLL_A2515 2612216 - 2611332 - | conserved repeat domain protein CLL_A2516 2612724 - 2612245 - | hypothetical protein TERM 3393 2612696 - 2612714 + g 79 -3.3 -5.69023 | opp_overlap 2612696 TCTATTGAGCAACAA TTTATTT TTTTT AAATAAA TTTTTTTCATATTTT TERM 3394 2612854 - 2612818 - R 100 -15.5 -4.77165 | opp_overlap 2612813 2612808 2612821 TTTTTCATAATAAAA GAAGTCGTTTTAAAGTA TTT TATTTTAAAACGACTTC TAAGGTTAAATTTCT TERM 3395 2612821 - 2612851 + r 100 -13.6 -3.37236 | opp_overlap 2612818, overlap 2612813 2612808 TTCATAATAAAAGAA GTCGTTTTAAAGTA TTT TATTTTAAAACGAC TTCTAAGGTTAAATT CLL_A2517 2620975 - 2612876 - | conserved repeat domain protein TERM 3396 2614151 - 2614139 - G 70 -6.3 -4.13995 | GTTTGATAAACTAAA TCCAA CTA TTGGA TCATAATTTGCATAG TERM 3397 2615014 - 2614995 - G 70 -5 -4.65747 | GAATCTTTAACAAAA GTTAAACC ATTT GGTATAAC ATCTCTAAAGTTTAT TERM 3398 2616520 - 2616534 + g 71 -7.2 -3.84585 | ATGAGAAGCCTGTAT TAGGAT CAA ATCCTA TCTTTTGTACTCCAT TERM 3399 2617714 - 2617704 - G 75 -5.4 -4.89477 | opp_overlap 2617704 GTTCCAATAATAAAA CCTA AAT TAGG ATTATAAGAAGATTT TERM 3400 2622757 - 2622771 + G 74 -4.2 -5.22006 | ACCACAATTAATATC TCCTCA CGG TGTGGA TTTTTATTATGGTGA CLL_A2518 2621198 - 2624617 + | conserved repeat domain protein TERM 3401 2624629 - 2624685 + T 95 -10.5 -3.89611 | opp_overlap 2624629 2624631 2624635, overlap 2624635 TTAATAACTAAAAAA TACGAATATCCCCACTAAGTATTAA AATCAAA TTTATACTTAGTGGGGATATTTAAA TTATATTATATTTTA TERM 3402 2624685 - 2624629 - T 100 -10.5 -5.37865 | opp_overlap 2624629 2624635, overlap 2624631 2624635 TTAATAACTAAAAAA TACGAATATCCCCACTAAGTATTAA AATCAAA TTTATACTTAGTGGGGATATTTAAA TTATATTATATTTTA TERM 3403 2624683 - 2624631 - T 100 -13.1 -4.30543 | opp_overlap 2624629 2624635, overlap 2624629 2624635 AATAACTAAAAAATA CGAATATCCCCACTAAGTATTAA AATCAAA TTTATACTTAGTGGGGATATTTA AATTATATTATATTT TERM 3404 2624635 - 2624679 + T 100 -16.1 -3.86112 | opp_overlap 2624631 2624629 2624635, overlap 2624629 ACTAAAAAATACGAA TATCCCCACTAAGTATTAA AATCAAA TTTATACTTAGTGGGGATA TTTAAATTATATTAT TERM 3405 2624679 - 2624635 - T 100 -16.1 -3.67898 | opp_overlap 2624635 2624629, overlap 2624631 2624629 ACTAAAAAATACGAA TATCCCCACTAAGTATTAA AATCAAA TTTATACTTAGTGGGGATA TTTAAATTATATTAT CLL_A2519 2625345 - 2624734 - | hypothetical protein TERM 3406 2625431 - 2625456 + r 82 -9.3 -3.45027 | opp_overlap 2625436, overlap 2625436 GTAAGTTAATACATT TATAATCTTTT ATAT AAAAGATTATA TCTTTAATAAACAAT CLL_A2520 2627079 - 2625718 - | mate efflux family protein TERM 3407 2626445 - 2626428 - G 72 -4.9 -4.86731 | overlap 2626423 TTCCTCTAAATAAAA CAATTCC TATA AGAATTG TTCCAACCAATCTTG CLL_A2521 2627249 - 2627710 + | hypothetical protein TERM 3408 2627813 - 2627869 + T 100 -19.3 -5.10064 | opp_overlap 2627823 2627829, overlap 2627816 2627817 CATTTCTTAAATATA TGTATATAAAGATAAAGCATGAGTAAA TGA TTTACTCATGCTTTATCTTTATAGTTA TTTTTCTCTATTAAA TERM 3409 2627816 - 2627866 + T 100 -23.2 -4.62708 | opp_overlap 2627823 2627829, overlap 2627813 2627817 TTCTTAAATATATGT ATATAAAGATAAAGCATGAGTAAA TGA TTTACTCATGCTTTATCTTTATAG TTATTTTTCTCTATT TERM 3410 2627817 - 2627865 + T 100 -26.7 -3.35185 | opp_overlap 2627823 2627829, overlap 2627816 2627813 TCTTAAATATATGTA TATAAAGATAAAGCATGAGTAAA TGA TTTACTCATGCTTTATCTTTATA GTTATTTTTCTCTAT TERM 3411 2627859 - 2627823 - T 100 -21.3 -4.0827 | opp_overlap 2627817 2627816 2627813, overlap 2627829 ATATATGTATATAAA GATAAAGCATGAGTAAA TGA TTTACTCATGCTTTATC TTTATAGTTATTTTT TERM 3412 2627853 - 2627829 - T 100 -14.5 -4.43283 | opp_overlap 2627817 2627816 2627813, overlap 2627823 GTATATAAAGATAAA GCATGAGTAAA TGA TTTACTCATGC TTTATCTTTATAGTT CLL_A2522 2628014 - 2627880 - | hypothetical protein CLL_A2523 2628212 - 2628066 - | hypothetical protein CLL_A2524 2629346 - 2628288 - | D-galactose-binding periplasmic protein TERM 3413 2629442 - 2629465 + r 85 -8.3 -4.68705 | opp_overlap 2629442 CCATAAGAATAAAAA TAAGCTTGT CATATA ACAAGCTTA TTTTATTAAAATTAT TERM 3414 2629465 - 2629442 - R 100 -9 -5.34365 | opp_overlap 2629442 CCATAAGAATAAAAA TAAGCTTGTC ATAT AACAAGCTTA TTTTATTAAAATTAT CLL_A2525 2629899 - 2629477 - | hypothetical protein CLL_A2526 2634516 - 2630212 - | CoA-substrate-specific enzyme activase domain protein TERM 3415 2630476 - 2630459 - G 76 -8.5 -3.5627 | opp_overlap 2630454 2630452 2630450 ACATGATTTGGTAAA CATGCAA AAGG TTGCATG CATACTATATTTTCA TERM 3416 2632155 - 2632165 + g 78 -2.6 -5.77571 | opp_overlap 2632155 AAAAGAAAGGAGAGA TATA TTT TATA TTTTTATTTTTTAAT TERM 3417 2634802 - 2634790 - g 72 -3.4 -5.252 | GATTGTTATAAAAAA TCTG CTACT CAGA AACAAAATGAGGCTT CLL_A2527 2634715 - 2635068 + | tetratricopeptide repeat protein TERM 3418 2635101 - 2635065 - T 100 -12.7 -5.25656 | opp_overlap 2635069 2635093, overlap 2635066 2635069 2635090 2635093 AAAATTATCAAAAAA TTAATATACTTCTTATA TTT TATAAGAAGTATATTAT AAATATGCTTCTTAG TERM 3419 2635100 - 2635066 - T 100 -16.2 -3.72953 | opp_overlap 2635069 2635093, overlap 2635065 2635069 2635090 2635093 AAATTATCAAAAAAT TAATATACTTCTTATA TTT TATAAGAAGTATATTA TAAATATGCTTCTTA TERM 3420 2635097 - 2635069 - T 100 -13.5 -3.96447 | opp_overlap 2635069 2635093, overlap 2635066 2635065 2635090 2635093 TTATCAAAAAATTAA TATACTTCTTATA TTT TATAAGAAGTATA TTATAAATATGCTTC TERM 3421 2635069 - 2635097 + T 100 -13.5 -3.41013 | opp_overlap 2635069 2635066 2635065 2635090 2635093, overlap 2635093 TTATCAAAAAATTAA TATACTTCTTATA TTT TATAAGAAGTATA TTATAAATATGCTTC CLL_A2528 2636182 - 2635118 - | transglutaminase domain protein CLL_A2529 2636833 - 2636195 - | regulatory protein RecX CLL_A2530 2638202 - 2636961 - | peptidase, M16 family CLL_A2531 2638382 - 2639053 + | transcriptional regulatory protein ResD TERM 3422 2639440 - 2639402 - g 80 -7.7 -4.56607 | TTATTAATGATAAAA CTTTAATTTTAGATGTT ATAAA ATCCTCTAAAATTAAAG TAACACGGTTTTATA CLL_A2532 2639053 - 2640561 + | two-component sensor histidine kinase TERM 3423 2640555 - 2640604 + TF 100 -17.7 -3.80768 | opp_overlap 2640563 2640567, overlap 2640558 2640563 TGTTAATAATGATTG TGATTAAAGAAATAAGATAAGGT AAAT ACCTTATCTTATTTCTTTTATTA TTCCTTTTCTATATA TERM 3424 2640558 - 2640601 + TF 100 -17.2 -4.00684 | opp_overlap 2640563 2640567, overlap 2640555 2640563 TAATAATGATTGTGA TTAAAGAAATAAGATAAGGT AAAT ACCTTATCTTATTTCTTTTA TTATTCCTTTTCTAT TERM 3425 2640563 - 2640596 + TF 100 -17.1 -4.96523 | opp_overlap 2640563 2640567, overlap 2640558 2640555 ATGATTGTGATTAAA GAAATAAGATAAGGT AAAT ACCTTATCTTATTTC TTTTATTATTCCTTT TERM 3426 2640596 - 2640563 - Tf 100 -17.1 -3.73953 | opp_overlap 2640563 2640558 2640555, overlap 2640567 ATGATTGTGATTAAA GAAATAAGATAAGGT AAAT ACCTTATCTTATTTC TTTTATTATTCCTTT TERM 3427 2640592 - 2640567 - Tf 100 -12.1 -4.49556 | opp_overlap 2640563 2640558 2640555, overlap 2640563 TTGTGATTAAAGAAA TAAGATAAGGT AAAT ACCTTATCTTA TTTCTTTTATTATTC fbp 2642576 - 2640585 - | fructose-1,6-bisphosphatase TERM 3428 2640727 - 2640737 + gF 76 -4 -5.39681 | ACTACAAGAGTTGTA GATA AAA TATC TTTTTCTTTCATTAT TERM 3429 2640903 - 2640915 + gF 84 -3.4 -5.77571 | ACCATTAGCCTTTAT TGGA CTTTC TCCA TTTTTCTTTTTTACT TERM 3430 2641079 - 2641094 + gF 82 -6.2 -5.02074 | CTATAAAATATCTTT CAAATG TAGC CATTTG TTTTTTACCAAATAA TERM 3431 2642518 - 2642531 + Gg 74 -3.9 -5.27399 | opp_overlap 2642518, overlap 2642529 TGTTTAGCTAACAAT CTAAA ATAC TTTAG TTTTTTACTATCTTC CLL_A2534 2642491 - 2642721 + | hypothetical protein TERM 3432 2642901 - 2642941 + Tr 100 -11.5 -3.84266 | opp_overlap 2642905, overlap 2642905 2642906 2642916 ATCCCAATATAATTA AAAAGCATTTTAAAATGTT TTA AACATTTTAAAATGCTTCC TTTCATATAAACTCT TERM 3433 2642905 - 2642937 + Tr 100 -16.7 -3.59402 | opp_overlap 2642905, overlap 2642901 2642906 2642916 CAATATAATTAAAAA GCATTTTAAAATGTT TTA AACATTTTAAAATGC TTCCTTTCATATAAA TERM 3434 2642937 - 2642905 - TR 100 -16.7 -4.99056 | opp_overlap 2642905 2642901 2642906 2642916 CAATATAATTAAAAA GCATTTTAAAATGTT TTA AACATTTTAAAATGC TTCCTTTCATATAAA gidA 2643833 - 2642976 - | tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA trx 2644165 - 2643851 - | thioredoxin CLL_A2537 2644152 - 2644307 + | hypothetical protein TERM 3435 2644383 - 2644412 + Tr 79 -8.7 -3.66874 | opp_overlap 2644383 TTTAAAACAAAAAAA GTTCGCAAAACTA ACTT TAGTTTCGTGAAC TTTAGATACAATTGC TERM 3436 2644412 - 2644383 - TR 100 -8.7 -6.09196 | opp_overlap 2644383 TTTAAAACAAAAAAA GTTCGCAAAACTA ACTT TAGTTTCGTGAAC TTTAGATACAATTGC CLL_A2538 2646266 - 2644560 - | lipid A export ATP-binding/permease protein MsbA CLL_A2539 2647013 - 2646342 - | aliphatic sulfonates import ATP-binding protein SsuB TERM 3437 2646693 - 2646706 + g 78 -2.5 -5.85244 | opp_overlap 2646693, overlap 2646691 AAGCCCTAGTGAAGA TAAAA TAGA TTTTA TTTTTTCTTTTAATT CLL_A2540 2647767 - 2646997 - | ABC transporter, permease protein TERM 3438 2647527 - 2647504 - GR 84 -6 -5.30575 | TAAAAACTTAAAAAA GGGATACATA AATG TAAGTACCCC TAAGATTATGGCTAA CLL_A2541 2648722 - 2647742 - | ABC transporter, substrate-binding lipoprotein TERM 3439 2648521 - 2648540 + gr 71 -8 -3.18031 | overlap 2648519 2648524 TATCTGGTACTTTTT CAATGTTA TAAT TAACATTG TATCCTTTTTGAAAC TERM 3440 2649011 - 2648975 - R 79 -8.4 -4.18674 | gap 1, opp_overlap 2648975 TCTATACATAAATAA GGTTTAATACTAAA-TA CTTA TACTTTAGCATTAAACC TTTATATAATCTATC CLL_A2542 2649441 - 2649022 - | hypothetical protein TERM 3441 2649313 - 2649327 + g 72 -7.2 -3.97401 | overlap 2649321 TTTTATGTCATCCAT CAACTT ACG AAGTTG TTCTTCTGATTTTCT CLL_A2543 2649612 - 2649911 + | hypothetical protein TERM 3442 2649926 - 2649906 - T 71 -7.1 -3.87149 | opp_overlap 2649901, overlap 2649901 TCTATTAAATTTAAA TATTAATAT TAA ATATTAATA AAAAATGATTACTAA TERM 3443 2649932 - 2649959 + T 88 -5 -5.93252 | opp_overlap 2649932 AATATTAATAAAAAA TGATTACTAATT TATT ATTTGGTAATCA TTTTTTATTTTTAAA TERM 3444 2649959 - 2649932 - T 70 -2.8 -5.54885 | opp_overlap 2649932 AATATTAATAAAAAA TGATTACTAATT TATT ATTTGGTAATCA TTTTTTATTTTTAAA asnB 2651868 - 2650024 - | asparagine synthase (glutamine-hydrolyzing) TERM 3445 2650649 - 2650619 - G 70 -8.6 -2.53015 | opp_overlap 2650618 2650626, overlap 2650626 2650629 ATATTTTTTAACTTA TTATTAATTATAGA TTT TCTATCATTAATAA ATCTTGACCATGGGA CLL_A2545 2652124 - 2653527 + | stage V sporulation protein AF TERM 3446 2653590 - 2653564 - T 80 -6.7 -5.05301 | opp_overlap 2653564 AAATAACTATAAAAA GATATGCTATT AATTA AATGGCATATC TTTTTATATAAAATC TERM 3447 2653564 - 2653590 + T 100 -8.9 -4.9792 | opp_overlap 2653564 AAATAACTATAAAAA GATATGCTATT AATTA AATGGCATATC TTTTTATATAAAATC CLL_A2546 2654484 - 2653648 - | S1 RNA binding domain CLL_A2547 2655017 - 2654508 - | ferripyochelin binding protein CLL_A2548 2655159 - 2656154 + | hypothetical protein TERM 3448 2656218 - 2656251 + T 93 -13.4 -2.86426 | opp_overlap 2656218, overlap 2656221 AAGGCTTAAACAAAA TAAGGGATACTGTT ATCTAA AGCAGTATCCCTTA TGGTTGTCAGTATTA TERM 3449 2656251 - 2656218 - T 100 -11.2 -4.88405 | opp_overlap 2656218 2656221 AAGGCTTAAACAAAA TAAGGGATACTGTT ATCTAA AGCAGTATCCCTTA TGGTTGTCAGTATTA TERM 3450 2656221 - 2656248 + T 91 -10.7 -3.57039 | opp_overlap 2656218, overlap 2656218 GCTTAAACAAAATAA GGGATACTGTT ATCTAA AGCAGTATCCC TTATGGTTGTCAGTA CLL_A2549 2656705 - 2656367 - | hypothetical protein TERM 3451 2656832 - 2656818 - H 70 -4.4 -5.08601 | opp_overlap 2656809 TTATTTTAATAAAAA TTATTA CTT TAATAA AAATTTTGAAAATAA CLL_A2550 2656936 - 2657403 + | transcriptional regulator, AsnC family CLL_A2551 2657481 - 2657681 + | hypothetical protein TERM 3452 2657689 - 2657723 + F 95 -8.2 -5.16206 | gap 1, overlap 2657718 2657720 TAGCATAAATTGATT TTAAGCATC-ATTTC TTTCTT GAAATTGATGCTTAA TTTTTATATTAATTT TERM 3453 2657767 - 2657800 + F 70 -7.1 -3.80745 | opp_overlap 2657777 2657782, overlap 2657765 2657777 2657780 2657782 GTAAAATTAATCTTT TTATAGTATATAA AATTTAAA TTATATACTATAA TTTAAATATTATGTT TERM 3454 2657777 - 2657811 + F 74 -9 -3.04248 | opp_overlap 2657777 2657782, overlap 2657765 2657767 2657780 2657782 TCTTTTTATAGTATA TAAAATTTAAATTATA TAC TATAATTTAAATATTA TGTTAGGAGGTATTA TERM 3455 2657811 - 2657777 - f 73 -9 -2.85351 | opp_overlap 2657765 2657767 2657777 2657780 2657782, overlap 2657782 TCTTTTTATAGTATA TAAAATTTAAATTATA TAC TATAATTTAAATATTA TGTTAGGAGGTATTA TERM 3456 2657806 - 2657782 - f 89 -8.9 -4.5954 | opp_overlap 2657767 2657780 2657777 2657782, overlap 2657777 TTATAGTATATAAAA TTTAAATTATA TAC TATAATTTAAA TATTATGTTAGGAGG TERM 3457 2657782 - 2657806 + F 77 -8.9 -3.41024 | opp_overlap 2657782 2657777, overlap 2657767 2657780 2657777 TTATAGTATATAAAA TTTAAATTATA TAC TATAATTTAAA TATTATGTTAGGAGG CLL_A2552 2657826 - 2658587 + | hypothetical protein TERM 3458 2658611 - 2658564 - T 100 -17.6 -4.39386 | opp_overlap 2658569 2658582, overlap 2658569 2658582 CTTAAACCATTAAAA GAAAAGATACTAAAAAAAGATT AGAA AATCTTTTTTTAGTATCTTTTT AATTTAGATCATGTT TERM 3459 2658606 - 2658569 - T 100 -17.5 -5.14626 | opp_overlap 2658569 2658582, overlap 2658564 2658582 ACCATTAAAAGAAAA GATACTAAAAAAAGATT AGAA AATCTTTTTTTAGTATC TTTTTAATTTAGATC TERM 3460 2658569 - 2658606 + T 100 -17.5 -5.00138 | opp_overlap 2658569 2658564 2658582, overlap 2658582 ACCATTAAAAGAAAA GATACTAAAAAAAGATT AGAA AATCTTTTTTTAGTATC TTTTTAATTTAGATC TERM 3461 2658582 - 2658593 + T 70 -3 -5.62219 | opp_overlap 2658582 2658569 2658564, overlap 2658569 AAGATACTAAAAAAA GATT AGAA AATC TTTTTTTAGTATCTT TERM 3462 2658593 - 2658582 - T 70 -3 -5.62219 | opp_overlap 2658569 2658582, overlap 2658569 2658564 AAGATACTAAAAAAA GATT AGAA AATC TTTTTTTAGTATCTT TERM 3463 2658694 - 2658637 - T 79 -8.4 -4.13963 | gap 2, opp_overlap 2658649 2658652 ATGTTTTAAAAAATA TTGATATATTT-A-TAAGTAAAGTGG ACTGAATG CCACTTTACCTATTTAAATATATCAA CTCATTTTAAAAGCA CLL_A2553 2660482 - 2658731 - | hypothetical protein CLL_A2554 2660698 - 2661564 + | metallo-beta-lactamase family protein gltX 2661718 - 2663175 + | glutamyl-tRNA synthetase TERM 3464 2663221 - 2663176 - T 100 -16.6 -3.98745 | gap 1, opp_overlap 2663182, overlap 2663181 2663182 GAATTACTTAAATAA TAAAAGCCCCTCTTGCATAAT TAGTT ACTATGCAAGAGGGG-TTTTA AGGTACCGTATTATT TERM 3465 2663217 - 2663181 - T 100 -14.6 -5.011 | opp_overlap 2663182, overlap 2663176 2663182 ACTTAAATAATAAAA GCCCCTCTTGCATAAT TAGTT ACTATGCAAGAGGGGT TTTAAGGTACCGTAT TERM 3466 2663216 - 2663182 - T 100 -18.1 -3.59033 | opp_overlap 2663182, overlap 2663181 2663176 CTTAAATAATAAAAG CCCCTCTTGCATAAT TAGTT ACTATGCAAGAGGGG TTTTAAGGTACCGTA TERM 3467 2663182 - 2663216 + T 100 -15.9 -4.14243 | opp_overlap 2663182 2663181 2663176 CTTAAATAATAAAAG CCCCTCTTGCATAAT TAGTT ACTATGCAAGAGGGG TTTTAAGGTACCGTA TERM 3468 2663239 - 2663288 + T 73 -6.8 -4.29139 | overlap 2663236 2663240 GTACCGTATTATTTA GATTTTCTTAGCTTTAAATTTA ACACTC TCAATTTAAAGCTAAGAAAAAA TTATTTTAAATTTAA TERM 3469 2663240 - 2663287 + T 87 -10.3 -3.16399 | overlap 2663239 2663236 TACCGTATTATTTAG ATTTTCTTAGCTTTAAATTTA ACACTC TCAATTTAAAGCTAAGAAAAA ATTATTTTAAATTTA CLL_A2556 2664045 - 2663305 - | hypothetical protein CLL_A2557 2664788 - 2664060 - | HAD-superfamily subfamily IB hydrolase CLL_A2558 2665018 - 2665239 + | hypothetical protein TERM 3470 2665470 - 2665449 - g 76 -4.5 -5.1963 | overlap 2665427 2665423 2665450 2665461 TCTAATGAAGAAAAA GTTGCAAAA GAAT TTTTGCAAA ATGGACAAGTTGATT TERM 3471 2665469 - 2665450 - g 76 -8 -3.70694 | overlap 2665427 2665423 2665449 2665461 CTAATGAAGAAAAAG TTGCAAAA GAAT TTTTGCAA AATGGACAAGTTGAT feoB 2665254 - 2667017 + | ferrous iron transport protein B CLL_A2560 2667070 - 2667222 + | hypothetical protein TERM 3472 2667335 - 2667384 + T 100 -15.3 -5.1523 | opp_overlap 2667339, overlap 2667338 2667339 TTGCTATAAAACAGG AAAAGTGCTGTATCATAATGCAT AAAA ATGCAATATGATACAGCACCTTA TTTTTATGTTATGCC TERM 3473 2667338 - 2667381 + T 100 -17 -4.65219 | opp_overlap 2667339, overlap 2667335 2667339 CTATAAAACAGGAAA AGTGCTGTATCATAATGCAT AAAA ATGCAATATGATACAGCACC TTATTTTTATGTTAT TERM 3474 2667339 - 2667380 + T 100 -20.5 -3.36691 | opp_overlap 2667339, overlap 2667338 2667335 TATAAAACAGGAAAA GTGCTGTATCATAATGCAT AAAA ATGCAATATGATACAGCAC CTTATTTTTATGTTA TERM 3475 2667380 - 2667339 - T 100 -20.5 -4.58236 | opp_overlap 2667339 2667338 2667335 TATAAAACAGGAAAA GTGCTGTATCATAATGCAT AAAA ATGCAATATGATACAGCAC CTTATTTTTATGTTA CLL_A2561 2668613 - 2667501 - | permease TERM 3476 2668814 - 2668870 + r 78 -6.9 -4.76644 | opp_overlap 2668829, overlap 2668829 2668832 AAGAAACTTAAAATA TACATAAAATAAAAACAACTAGAAACT TAA AGTTTCTAGTTGTTTCTCAATTATATA TTTTTACTACATCTT TERM 3477 2668855 - 2668829 - R 100 -15.4 -5.58522 | opp_overlap 2668814 2668829 2668832 TACATAAAATAAAAA CAACTAGAAACT TAA AGTTTCTAGTTG TTTCTCAATTATATA TERM 3478 2668829 - 2668855 + r 100 -15.4 -4.01137 | opp_overlap 2668829, overlap 2668814 2668832 TACATAAAATAAAAA CAACTAGAAACT TAA AGTTTCTAGTTG TTTCTCAATTATATA TERM 3479 2668832 - 2668852 + r 100 -11.3 -4.11906 | opp_overlap 2668829, overlap 2668829 2668814 ATAAAATAAAAACAA CTAGAAACT TAA AGTTTCTAG TTGTTTCTCAATTAT argS 2670568 - 2668877 - | arginyl-tRNA synthetase TERM 3480 2670699 - 2670674 - H 85 -3.3 -6.28967 | opp_overlap 2670674, overlap 2670696 TATAAATAAAAAAAA TTCCTCTCTAA AAAA TAAGAGACGAA TTATCCGCGGTACCA TERM 3481 2671045 - 2671020 - H 100 -10.7 -5.28983 | opp_overlap 2671026 TCGAAAAGATAAAAA TTAAGAGTTTT AATT AAAACTCTTAA AGAATTTATAAAAAT TERM 3482 2672210 - 2672222 + G 70 -7.7 -3.38224 | opp_overlap 2672207 2672199, overlap 2672207 AATATAAATAGAGCC CATGC TGA GCATG TATTTAACATAACCT CLL_A2563 2671223 - 2672734 + | Ppx/GppA phosphatase family protein TERM 3483 2672803 - 2672846 + T 89 -9.2 -4.28791 | opp_overlap 2672808, overlap 2672808 ATTTTCTGAAAAATA AAAAATGAGTTCGAAAAT ACACTGAA ATTTTCGAGCTCATTTTG TTTATCTTATAAATT TERM 3484 2672808 - 2672841 + T 100 -9.1 -5.11389 | opp_overlap 2672808, overlap 2672803 CTGAAAAATAAAAAA TGAGTTCGAAAAT ACACTGAA ATTTTCGAGCTCA TTTTGTTTATCTTAT TERM 3485 2672841 - 2672808 - T 93 -6.9 -5.93252 | opp_overlap 2672808 2672803 CTGAAAAATAAAAAA TGAGTTCGAAAAT ACACTGAA ATTTTCGAGCTCA TTTTGTTTATCTTAT CLL_A2564 2673571 - 2672933 - | protein with metal dependent protease domain TERM 3486 2673039 - 2673023 - G 80 -5.3 -5.19261 | opp_overlap 2673025 2673029 AAATCCACCAAAAAA TATTATT CCT AATAATA TTAGCATTTGATATC CLL_A2565 2674847 - 2673816 - | hypothetical protein CLL_A2566 2675909 - 2674866 - | hypothetical protein CLL_A2567 2676164 - 2677132 + | biotin-[acetyl-CoA-carboxylase] ligase TERM 3487 2677139 - 2677160 + T 70 -3.8 -5.14563 | AGAGTTTAAGCTAAG CTTTTTAG ATTCCA CTAAAGAG TTTTTTCATAAACAA TERM 3488 2677258 - 2677233 - T 73 -5.4 -4.8048 | overlap 2677235 CTTGTACATTAAAAA TAGGCTCTGC ATTAAA ACAGAGCCTT AAAATATATACTTTT TERM 3489 2677256 - 2677235 - T 77 -8 -4.02302 | overlap 2677233 TGTACATTAAAAATA GGCTCTGC ATTAAA ACAGAGCC TTAAAATATATACTT asnA 2678285 - 2677272 - | aspartate--ammonia ligase TERM 3490 2677436 - 2677452 + g 70 -2.3 -5.39721 | opp_overlap 2677436 TACCTTCTAATAACA TCTTG TGAAATT CAAGA TTTTTTCTATCCTCA TERM 3491 2678382 - 2678348 - R 73 -5.7 -4.73388 | gap 1 AATGTTTAGTAAAAA GGAGGCCTTAGAATGC ATTT GCATACTT-GACCTCC TAAACATCCGTATTT CLL_A2569 2679393 - 2678443 - | L-lactate dehydrogenase TERM 3492 2679610 - 2679630 + H 71 -6.9 -4.03782 | opp_overlap 2679628 ATATAATTAGATTTA GGCATTAAT TAG AATAATGCC TTTAATTATAGTATT TERM 3493 2679631 - 2679661 + H 100 -13 -4.32177 | opp_overlap 2679628 2679639 2679641 AATTAGAATAATGCC TTTAATTATAGTAT TAC ATACTATAATTAAA TTTCTTATACACTAG CLL_A2570 2679695 - 2680309 + | exonuclease, RNase T and DNA polymerase III TERM 3494 2680456 - 2680399 - f 100 -16.3 -2.79684 | opp_overlap 2680402, overlap 2680402 2680422 TTATCAATTTAATTA TAATATTTAGAGAATTGCATTAATATT TGTT AACATTAATATAATTCTCTAAATATTA TAATAGTATCAACAA TERM 3495 2680402 - 2680453 + F 93 -11.4 -3.45849 | opp_overlap 2680399 2680402 2680422 TCAATTTAATTATAA TATTTAGAGAATTGCATTAATATT TGTT AACATTAATATAATTCTCTAAATA TTATAATAGTATCAA TERM 3496 2680453 - 2680402 - f 100 -13.6 -3.54109 | opp_overlap 2680402, overlap 2680399 2680422 TCAATTTAATTATAA TATTTAGAGAATTGCATTAATATT TGTT AACATTAATATAATTCTCTAAATA TTATAATAGTATCAA CLL_A2571 2680499 - 2680660 + | rubredoxin TERM 3497 2680823 - 2680852 + T 100 -12.4 -4.45693 | opp_overlap 2680823 TTCTAAAGAAAAAAA TAAGGAGCTTTT TATTTT AAAAGCTCCTTA TTTCTATTTATCTTC TERM 3498 2680852 - 2680823 - T 100 -12.4 -5.95539 | opp_overlap 2680823 TTCTAAAGAAAAAAA TAAGGAGCTTTT TATTTT AAAAGCTCCTTA TTTCTATTTATCTTC pflA 2681566 - 2680856 - | pyruvate formate-lyase 1-activating enzyme TERM 3499 2681620 - 2681589 - R 82 -8.2 -4.52589 | gap 1, opp_overlap 2681589 2681594, overlap 2681590 TCCTCCTAGAGAAAA CTACACCCCTGTCAT TTA AT-ACAGGGGTATAA TTAAGTATGTTTATG TERM 3500 2681619 - 2681590 - R 82 -9.5 -3.31232 | gap 1, opp_overlap 2681589 2681594, overlap 2681589 CCTCCTAGAGAAAAC TACACCCCTGTCAT TTA AT-ACAGGGGTATA ATTAAGTATGTTTAT pflB 2683965 - 2681737 - | formate acetyltransferase CLL_A2574 2684390 - 2685472 + | hypothetical protein TERM 3501 2685774 - 2685764 - T 73 -2.6 -5.68023 | overlap 2685768 TCAGAATTAAAAAAA TAAA TAA TTTA ATTAAAAGTTACTTT TERM 3502 2685820 - 2685768 - T 95 -8.2 -5.25976 | opp_overlap 2685776, overlap 2685764 2685776 2685782 AATTAAAAAAATAAA TAATTTAATTAAAAGTTACTTTAA ACATA TTAAAGTAACTTTTAATTTTCTTA TTAATATTATACATA TERM 3503 2685812 - 2685776 - T 100 -14.2 -3.38207 | opp_overlap 2685776, overlap 2685768 2685782 AAATAAATAATTTAA TTAAAAGTTACTTTAA ACATA TTAAAGTAACTTTTAA TTTTCTTATTAATAT TERM 3504 2685776 - 2685812 + T 100 -14.2 -4.93661 | opp_overlap 2685776 2685768 2685782 AAATAAATAATTTAA TTAAAAGTTACTTTAA ACATA TTAAAGTAACTTTTAA TTTTCTTATTAATAT TERM 3505 2685806 - 2685782 - T 86 -8.8 -4.46267 | opp_overlap 2685776, overlap 2685776 2685768 ATAATTTAATTAAAA GTTACTTTAA ACATA TTAAAGTAAC TTTTAATTTTCTTAT pyrE 2686587 - 2685913 - | orotate phosphoribosyltransferase CLL_A2576 2687785 - 2686889 - | dihydroorotate dehydrogenase, catalytic subunit CLL_A2577 2688550 - 2687807 - | dihydroorotate dehydrogenase electron transfer subunit pyrF 2689434 - 2688562 - | orotidine 5'-phosphate decarboxylase TERM 3506 2688762 - 2688801 + g 70 -5.3 -4.45544 | opp_overlap 2688769, overlap 2688765 GTGCTCCATATCCAG GTATTAAGAAAAACATT GAATTA AATCTTTTTCTTAATTC TTTTCCTTCCTCAAC TERM 3507 2688765 - 2688798 + g 70 -5.6 -4.34008 | opp_overlap 2688769, overlap 2688762 CTCCATATCCAGGTA TTAAGAAAAACATT GAATTA AATCTTTTTCTTAA TTCTTTTCCTTCCTC pyrC 2690745 - 2689549 - | dihydroorotase, multifunctional complex type CLL_A2580 2691199 - 2690768 - | aspartate carbamoyltransferase regulatory chain pyrB 2692124 - 2691201 - | aspartate carbamoyltransferase TERM 3508 2691411 - 2691425 + g 72 -7.2 -4.05491 | opp_overlap 2691408 AAGTCTTAAGTATTC TTCTTC ATT GAAGAA TCTTTCTTTTTGAAT TERM 3509 2692340 - 2692316 - R 100 -8 -5.63504 | gap 1 AATTGTATAAAAAAA GCCTT-CTTCA CGCA TGAAGGAAGGC ATAATAATCCTGTAA TERM 3510 2692416 - 2692428 + r 70 -4.9 -4.9041 | opp_overlap 2692405 2692427, overlap 2692405 2692425 2692427 AAAGGTTATTCTTTG TGTTA GAA TAACA TTATTTTTTTCTCAT TERM 3511 2692425 - 2692463 + r 86 -7.8 -4.86621 | opp_overlap 2692405 2692427, overlap 2692405 2692416 2692427 TCTTTGTGTTAGAAT AACATTATTTTTTTCT CATGTCA AGAAAAAAATAATGTA TTTTTAGTTGAAGGT TERM 3512 2692427 - 2692461 + r 95 -10.4 -4.05402 | opp_overlap 2692427, overlap 2692416 2692425 TTTGTGTTAGAATAA CATTATTTTTTTCT CATGTCA AGAAAAAAATAATG TATTTTTAGTTGAAG TERM 3513 2692461 - 2692427 - R 95 -11.8 -3.78934 | opp_overlap 2692416 2692425 2692427 TTTGTGTTAGAATAA CATTATTTTTTTCTCA TGT CAAGAAAAAAATAATG TATTTTTAGTTGAAG TERM 3514 2692567 - 2692609 + r 78 -9.4 -2.96598 | opp_overlap 2692570, overlap 2692570 2692579 TAATTTTCTATAAAA AAATTGCACTAATGAATATT CTA AATATACATTAGTGCAATCC TATATAACTTAATTA TERM 3515 2692606 - 2692570 - R 100 -15.5 -5.60993 | opp_overlap 2692567 2692570 2692579 TTTTCTATAAAAAAA TTGCACTAATGAATATT CTA AATATACATTAGTGCAA TCCTATATAACTTAA TERM 3516 2692570 - 2692606 + r 100 -15.5 -2.71322 | opp_overlap 2692570, overlap 2692567 2692579 TTTTCTATAAAAAAA TTGCACTAATGAATATT CTA AATATACATTAGTGCAA TCCTATATAACTTAA uppP 2693498 - 2692641 - | undecaprenyl-diphosphatase UppP CLL_A2583 2694694 - 2693567 - | hypothetical protein TERM 3517 2694815 - 2694776 - R 75 -7.5 -3.93004 | ATAATAGCTTAGAAA CTATAATATACAATGCA AATTAA TACATTATATACTATAG TTAACTTTACTCTTG CLL_A2584 2696618 - 2694849 - | tetratricopeptide repeat domain protein TERM 3518 2695867 - 2695883 + g 76 -6.7 -4.44914 | CTTATTAACTTTTCT TTATCAT ATA ATGATAA TTCTTTTATTCCCTC CLL_A2585 2696814 - 2698175 + | Mur ligase family protein CLL_A2586 2698194 - 2698925 + | glutamine amidotransferase, CobB/CobQ family TERM 3519 2698973 - 2698938 - T 100 -12.2 -4.86939 | opp_overlap 2698938 TAATAAATTTAAAAA TTAGCTAATATCAATA GAAA TTTTGATATTAGCTAA TTTTTAGTTATATAT TERM 3520 2698938 - 2698973 + T 100 -12.2 -4.9755 | opp_overlap 2698938 TAATAAATTTAAAAA TTAGCTAATATCAATA GAAA TTTTGATATTAGCTAA TTTTTAGTTATATAT CLL_A2587 2699740 - 2698994 - | peptidoglycan N-acetylglucosamine deacetylase TERM 3521 2699921 - 2699881 - H 100 -11.7 -4.0896 | opp_overlap 2699881 AAAGGCTTTCTAAAA TATATATTTAAAAATTC AATCAAA GAATTTTTAAATATATA TTTCAACCCTCCACT TERM 3522 2699881 - 2699921 + H 95 -11.7 -3.55563 | opp_overlap 2699881 AAAGGCTTTCTAAAA TATATATTTAAAAATTC AATCAAA GAATTTTTAAATATATA TTTCAACCCTCCACT TERM 3523 2700017 - 2699998 - H 72 -3.6 -5.33405 | opp_overlap 2699998, overlap 2699992 TTTATGAAATAAAAA GGATTTTT TAAG AAAATTCC TTATATTATGTGTTG CLL_A2588 2700113 - 2701390 + | D-alanyl-D-alanine carboxypeptidase TERM 3524 2701651 - 2701640 - g 71 -4.4 -4.84146 | opp_overlap 2701640 ATTATATAAAAGAAA CACA GGAA TGTG TTATTAATTTGCCTA CLL_A2589 2701450 - 2702049 + | flavoredoxin TERM 3525 2702100 - 2702052 - T 100 -17.2 -4.97824 | opp_overlap 2702057, overlap 2702057 AAAATCTAAATAAAA GAAAATCCACATACAAAAACCT CTTAT AGATTTTTGTATGTGGATTTTT ATTATAGACTTTTCC TERM 3526 2702095 - 2702057 - T 100 -17.1 -5.34857 | opp_overlap 2702057, overlap 2702052 CTAAATAAAAGAAAA TCCACATACAAAAACCT CTTAT AGATTTTTGTATGTGGA TTTTTATTATAGACT TERM 3527 2702057 - 2702095 + T 100 -14.9 -5.19328 | opp_overlap 2702052 2702057 CTAAATAAAAGAAAA TCCACATACAAAAACCT CTTAT AGATTTTTGTATGTGGA TTTTTATTATAGACT CLL_A2590 2702478 - 2702140 - | ArsC family TERM 3528 2702832 - 2702842 + G 71 -4 -5.08367 | GTTATTTTGATAATT TAAG AGG CTTA TTTTTAATTTGTGTT TERM 3529 2703145 - 2703173 + G 70 -8.5 -2.58663 | opp_overlap 2703143 2703141 2703166, overlap 2703144 ATTTGCATTAACAGC TTTTTATATAATT TCA GATTATATAAAAA ATTATAGAACTGCGT CLL_A2591 2702795 - 2703748 + | putative acyltransferase TERM 3530 2703794 - 2703743 - T 100 -29.4 -3.91846 | opp_overlap 2703743, overlap 2703751 AAAATTAAATTTAAA GTATAAAACTAGTGGCTATCTTAA TATA TTAAGATAGCCACTAGTTTTATAC TTTTTTAATTAGCGA TERM 3531 2703743 - 2703794 + T 100 -29.4 -5.26875 | opp_overlap 2703743 2703751 AAAATTAAATTTAAA GTATAAAACTAGTGGCTATCTTAA TATA TTAAGATAGCCACTAGTTTTATAC TTTTTTAATTAGCGA TERM 3532 2703786 - 2703751 - T 100 -20.8 -4.62168 | opp_overlap 2703743, overlap 2703743 ATTTAAAGTATAAAA CTAGTGGCTATCTTAA TATA TTAAGATAGCCACTAG TTTTATACTTTTTTA CLL_A2592 2704436 - 2703789 - | membrane protein, DedA family CLL_A2593 2705890 - 2704553 - | mate efflux family protein TERM 3533 2706055 - 2706100 + r 95 -10.9 -3.75665 | opp_overlap 2706053 CTCTATTTTAAATGT GTGTTGATATATACAAT AAATAAAGTGAC ATTGTATATATCAACAC TTTGCTAAAATATAG TERM 3534 2706175 - 2706131 - R 88 -8.1 -4.87318 | opp_overlap 2706131 CCTAAAATTTAAAAA GCTCAAAAGATAAAATTTATT TAA AATTCATTTTATCCTTTGGGC TTTTTATTTGTATTT TERM 3535 2706131 - 2706175 + r 100 -8.1 -5.48623 | opp_overlap 2706131 CCTAAAATTTAAAAA GCTCAAAAGATAAAATTTATT TAA AATTCATTTTATCCTTTGGGC TTTTTATTTGTATTT CLL_A2594 2708005 - 2706239 - | hypothetical protein CLL_A2595 2708440 - 2709324 + | 5'-nucleotidase, lipoprotein e(P4) family TERM 3536 2709413 - 2709468 + F 70 -6.3 -4.3739 | opp_overlap 2709418, overlap 2709416 2709418 2709422 TTAATATAAAAGTAC AAAAAGAAACAGCAGGTAGCTTTGT GTAAAA ACAAAACTACCTACTGTTTCTATGA TTTTCTCACCGAATC TERM 3537 2709416 - 2709465 + F 93 -12.4 -3.1733 | opp_overlap 2709418, overlap 2709413 2709418 2709422 ATATAAAAGTACAAA AAGAAACAGCAGGTAGCTTTGT GTAAAA ACAAAACTACCTACTGTTTCTA TGATTTTCTCACCGA TERM 3538 2709463 - 2709418 - f 100 -19.4 -5.10601 | opp_overlap 2709416 2709413 2709418 2709422 ATAAAAGTACAAAAA GAAACAGCAGGTAGCTTTGT GTAAAA ACAAAACTACCTACTGTTTC TATGATTTTCTCACC TERM 3539 2709418 - 2709463 + F 100 -15 -3.14587 | opp_overlap 2709418, overlap 2709416 2709413 2709422 ATAAAAGTACAAAAA GAAACAGCAGGTAGCTTTGT GTAAAA ACAAAACTACCTACTGTTTC TATGATTTTCTCACC TERM 3540 2709422 - 2709459 + F 95 -10 -4.21701 | opp_overlap 2709418, overlap 2709418 2709416 2709413 AAGTACAAAAAGAAA CAGCAGGTAGCTTTGT GTAAAA ACAAAACTACCTACTG TTTCTATGATTTTCT TERM 3541 2709522 - 2709536 + F 70 -7.8 -3.322 | opp_overlap 2709532 CGAACCCCTGGCCCA CGCCTT AGA AGGGCG TTGCTCTATCCAGCT TERM 3542 2710179 - 2710207 + F 100 -7.5 -5.71712 | opp_overlap 2710179 CCGCGGAGTATATAA CTTCTGCCTCT GTAATTA AGAGGTAGGAG TTTTTTTGTATACAC CLL_A2597 2710247 - 2711419 + | sodium:dicarboxylate symporter family protein CLL_A2598 2711671 - 2711471 - | hypothetical protein CLL_A2599 2711989 - 2712384 + | hypothetical protein TERM 3543 2712400 - 2712439 + T 100 -11 -5.47964 | opp_overlap 2712400 2712406, overlap 2712387 2712402 TGCTTTTATAAAAAA TATAAAGGTGTATTGTTA AATT TTACAATACACCTTTGTG TTTTTATTGTTTTAT TERM 3544 2712439 - 2712400 - T 83 -6.6 -5.24129 | opp_overlap 2712387 2712400 2712402, overlap 2712406 TGCTTTTATAAAAAA TATAAAGGTGTATTGTTA AATT TTACAATACACCTTTGTG TTTTTATTGTTTTAT TERM 3545 2712402 - 2712437 + T 100 -11.4 -4.32946 | opp_overlap 2712400 2712406, overlap 2712387 2712400 CTTTTATAAAAAATA TAAAGGTGTATTGTTA AATT TTACAATACACCTTTG TGTTTTTATTGTTTT TERM 3546 2712433 - 2712406 - T 100 -10 -4.68607 | opp_overlap 2712387 2712402 2712400, overlap 2712400 TATAAAAAATATAAA GGTGTATTGTTA AATT TTACAATACACC TTTGTGTTTTTATTG CLL_A2600 2713480 - 2712443 - | D-galactose-binding periplasmic protein CLL_A2601 2714091 - 2713585 - | adenylate cyclase CLL_A2602 2714787 - 2714365 - | glyoxalase/bleomycin resistance protein/dioxygenase TERM 3547 2714776 - 2714786 + g 74 -4 -5.2291 | opp_overlap 2714776 CGCAATATGAACAAG TGAT TGT ATCA TTTTTATTCTCCTAT TERM 3548 2715001 - 2714970 - R 88 -4.7 -5.88565 | gap 1, opp_overlap 2714970 2714981 TGCATAACAAAAAAA TATCACACT-TTCA TTTTT TGAAGAATGTGATA TTTAAAATTATTATT CLL_A2603 2715588 - 2715148 - | hypothetical protein CLL_A2604 2715785 - 2715591 - | hypothetical protein TERM 3549 2716086 - 2716028 - R 84 -9.4 -3.74198 | gap 1, overlap 2716029 AAAAAATATCGCAAA TTCATTTCTGATATACTCCCTTTAA CCAATCTATC TTAAAGGGAGCATATGAGAAATGA- ATAATACGATATTTC TERM 3550 2716086 - 2716029 - R 100 -15.4 -2.82892 | overlap 2716028 AAAAATATCGCAAAT TCATTTCTGATATACTCCCTTTAA CCAATCTATC TTAAAGGGAGCATATGAGAAATGA ATAATACGATATTTC CLL_A2605 2716377 - 2716108 - | hypothetical protein tehB 2717050 - 2716487 - | tellurite resistance protein TehB TERM 3551 2716787 - 2716804 + g 72 -4.9 -4.89054 | TAAATCTACTAATTG TGTTTTC ATTT GAAGACA TTCTTTTTTTATAAA TERM 3552 2717312 - 2717344 + r 76 -9.4 -2.80816 | opp_overlap 2717307 2717304 AAATATATCATCAGT TTATTTCTCCTTCA TTAGT TGAAAGAGAAATAA TATAATCGATCCAAA CLL_A2607 2717776 - 2717312 - | hypothetical protein CLL_A2608 2717989 - 2717852 - | flagellin CLL_A2609 2718397 - 2719326 + | putative phosphotransferase enzyme family TERM 3553 2719469 - 2719457 - T 70 -2.7 -5.62219 | AATATATTAAAAAAA TTCCT CAA AGAAA TTTTCTCTAACACTT TERM 3554 2719926 - 2719960 + T 78 -8.2 -3.90592 | gap 1, opp_overlap 2719926 2719925 2719928 TATTATATAAAAATG GACCTAAAAG-ATAA ATTCAC TTATTCTTTTAGGTC TTAATTTTTCATTTA TERM 3555 2719960 - 2719926 - T 72 -8.9 -2.75165 | gap 1, opp_overlap 2719926, overlap 2719925 2719928 TATTATATAAAAATG GACCTAAAAG-ATAAA TTCA CTTATTCTTTTAGGTC TTAATTTTTCATTTA CLL_A2610 2720093 - 2719929 - | hypothetical protein TERM 3556 2720262 - 2720302 + H 100 -16.4 -5.38549 | opp_overlap 2720264 CTGCGTAATGCTAAT GACTCCTACAAAAAACGG GTATA CTGTCTTTTGTAGGAGTC TTTTTATTCTTTAGA TERM 3557 2720300 - 2720264 - H 91 -13.2 -2.75481 | opp_overlap 2720262 GCGTAATGCTAATGA CTCCTACAAAAAACGG GTATA CTGTCTTTTGTAGGAG TCTTTTTATTCTTTA TERM 3558 2720787 - 2720801 + G 70 -7.8 -3.44051 | overlap 2720786 AGGTACTTTTGTAAC CCACCT TTT GGGTGG TTCTGCTGGTAGAGA CLL_A2611 2720425 - 2721798 + | voltage-gated chloride channel TERM 3559 2721804 - 2721840 + T 76 -9.7 -2.8474 | opp_overlap 2721809, overlap 2721809 TAATAAATAGGATTC TAAAATGGAAGTAATTA TCT TAACTACTTCCATTTTC TGATTGTGCCTAAAG TERM 3560 2721809 - 2721835 + T 93 -9.6 -4.58466 | opp_overlap 2721809, overlap 2721804 AATAGGATTCTAAAA TGGAAGTAATTA TCT TAACTACTTCCA TTTTCTGATTGTGCC TERM 3561 2721835 - 2721809 - T 100 -11.8 -4.16681 | opp_overlap 2721809 2721804 AATAGGATTCTAAAA TGGAAGTAATTA TCT TAACTACTTCCA TTTTCTGATTGTGCC CLL_A2612 2722150 - 2722001 - | glutathione biosynthesis bifunctional protein gshAB CLL_A2613 2723654 - 2722326 - | mate efflux family protein TERM 3562 2722731 - 2722748 + g 73 -4.3 -5.0133 | TGAACTTCTATACCC TTTAATA ATCC TATTAAA TTTTTTAGCCCCATA CLL_A2614 2723928 - 2723674 - | peptidase C26 TERM 3563 2724535 - 2724525 - H 70 -2.6 -5.626 | overlap 2724527 CACCTCATAAAAAAA TATT AAC AATA AAAATTAATTGTTAA CLL_A2615 2725195 - 2726187 + | penicillin acylase TERM 3564 2726264 - 2726228 - T 90 -11 -3.16267 | opp_overlap 2726228 TTTAACCATACTTAA TGACCTGTCCACTATC TACTT AATAATGGGCAGGTCA TTTGCTAGTATCTTT TERM 3565 2726228 - 2726264 + T 95 -10.3 -3.85082 | opp_overlap 2726228 TTTAACCATACTTAA TGACCTGTCCACTAT CTACTTA ATAATGGGCAGGTCA TTTGCTAGTATCTTT CLL_A2616 2727778 - 2726438 - | inner membrane protein YicO TERM 3566 2727839 - 2727823 - R 78 -6.7 -4.77165 | opp_overlap 2727822 2727818 2727823 TTCTTTATAAGAAAA TGATTAA TAC TTAATCA ATTACTTAATCAAAT TERM 3567 2727986 - 2727951 - R 76 -4.2 -5.4505 | gap 1, opp_overlap 2727963, overlap 2727963 TTTTGCAATAAAAAA GACCAAAACAAATAGCT AAA AGCTATT-ATTGTAGTC AGGTAATATGAGCAC TERM 3568 2727975 - 2727963 - R 76 -6.3 -4.79053 | opp_overlap 2727963, overlap 2727951 AAAGACCAAAACAAA TAGCT AAA AGCTA TTATTGTAGTCAGGT TERM 3569 2728413 - 2728379 - R 73 -7.3 -4.0371 | opp_overlap 2728383, overlap 2728383 CACTTTGTACATAAA CTAACCCTAAAAGTA TATTT TACCTTTAGGGTTTA TCAATTTTAAATTTA TERM 3570 2728383 - 2728409 + r 79 -8.1 -4.06179 | opp_overlap 2728379 2728383 TTGTACATAAACTAA CCCTAAAAGTA TATTT TACCTTTAGGG TTTATCAATTTTAAA TERM 3571 2728409 - 2728383 - R 91 -10.3 -3.65294 | opp_overlap 2728383, overlap 2728379 TTGTACATAAACTAA CCCTAAAAGTA TATTT TACCTTTAGGG TTTATCAATTTTAAA CLL_A2617 2728806 - 2728585 - | hypothetical protein CLL_A2618 2729118 - 2728885 - | hypothetical protein CLL_A2619 2729605 - 2729120 - | hypothetical protein CLL_A2620 2729829 - 2729602 - | hypothetical protein CLL_A2621 2730313 - 2730513 + | hypothetical protein TERM 3572 2730553 - 2730517 - T 73 -5.3 -4.84017 | opp_overlap 2730520, overlap 2730520 2730522 AATTTTGCATAAAAA TAAGGCAATAAACATAT TTT AAATGTTTATTGTCTTT TAACATTGTGTTTTT TERM 3573 2730520 - 2730550 + T 89 -9.2 -4.2361 | opp_overlap 2730517 2730520 2730522 TTTGCATAAAAATAA GGCAATAAACATAT TTT AAATGTTTATTGTC TTTTAACATTGTGTT TERM 3574 2730550 - 2730520 - T 77 -7 -4.52873 | opp_overlap 2730520, overlap 2730517 2730522 TTTGCATAAAAATAA GGCAATAAACATAT TTT AAATGTTTATTGTC TTTTAACATTGTGTT TERM 3575 2730729 - 2730787 + T 75 -5.7 -4.91657 | gap 1, opp_overlap 2730744, overlap 2730744 TATAATTTGTTAGTA TTGTGCATTAAAAAATCGCA-AATTCAA TCTC TTGAATAATGCGATTTTTTAATACGTTA TTTATTTTATTGGTT TERM 3576 2730772 - 2730744 - T 70 -4 -5.14563 | gap 1, opp_overlap 2730744 2730729 TTGTGCATTAAAAAA TCGCA-AATTCAA TCTC TTGAATAATGCGA TTTTTTAATACGTTA TERM 3577 2730744 - 2730772 + T 70 -4 -5.18357 | gap 1, opp_overlap 2730744, overlap 2730729 TTGTGCATTAAAAAA TCGCA-AATTCAA TCTC TTGAATAATGCGA TTTTTTAATACGTTA CLL_A2622 2731628 - 2730858 - | hypothetical protein CLL_A2623 2732731 - 2732096 - | hypothetical protein CLL_A2624 2732876 - 2733115 + | hypothetical protein TERM 3578 2733419 - 2733362 - T 75 -8 -3.86916 | TATTAGTACATGAAA GCACTCGTTAAAATACGTTAAATTTA GTGCTA TCAATTTATCGGATTTTATCGAATGC GACTTTTAAAGAAAT TERM 3579 2733500 - 2733551 + T 91 -13.4 -2.72558 | opp_overlap 2733500, overlap 2733509 GGTTCTAACACAAAA TTCGGTAAAGGTTGGTTAATGTTG TGCG CAAGATTAATCAAGCTTTATCGAA TCGTTAGAAGATTAT TERM 3580 2733551 - 2733500 - T 89 -9 -4.66537 | opp_overlap 2733500 2733509 GGTTCTAACACAAAA TTCGGTAAAGGTTGGTTAATGTTG TGCG CAAGATTAATCAAGCTTTATCGAA TCGTTAGAAGATTAT TERM 3581 2734109 - 2734053 - T 100 -13.4 -5.41941 | gap 1, opp_overlap 2734070, overlap 2734056 TAAACTAAATAAAAA TAAGCATAAATTAATAACTGGACCAGC ATTT GCTTGTCCAGTT-TTAACTTATGCCAA AAAGGTAAAGTTTGA TERM 3582 2734106 - 2734056 - T 100 -17.3 -4.74052 | gap 1, opp_overlap 2734070, overlap 2734053 ACTAAATAAAAATAA GCATAAATTAATAACTGGACCAGC ATTT GCTTGTCCAGTT-TTAACTTATGC CAAAAAGGTAAAGTT TERM 3583 2734070 - 2734093 + T 100 -11 -4.3208 | opp_overlap 2734056 2734053 AGCATAAATTAATAA CTGGACCAGC ATTT GCTTGTCCAG TTTTAACTTATGCCA TERM 3584 2734499 - 2734556 + T 100 -10.9 -4.37871 | gap 1, opp_overlap 2734505, overlap 2734505 TGTATCTTAAAAGAA TA-AAAAGGCATGTACATTTTGGTAAAC ATT GTTTACCGAAGTGGACTTGCCTTTAATA TTTGATTTTGTTTAG TERM 3585 2734505 - 2734549 + T 100 -15.9 -4.05229 | opp_overlap 2734505, overlap 2734499 TTAAAAGAATAAAAA GGCATGTACATTTTGGTAAAC ATT GTTTACCGAAGTGGACTTGCC TTTAATATTTGATTT TERM 3586 2734549 - 2734505 - T 100 -11.5 -5.4593 | opp_overlap 2734499 2734505 TTAAAAGAATAAAAA GGCATGTACATTTTGGTAAAC ATT GTTTACCGAAGTGGACTTGCC TTTAATATTTGATTT CLL_A2625 2735198 - 2734665 - | putative acetyltransferase TERM 3587 2735791 - 2735770 - g 84 -6.7 -5.07053 | opp_overlap 2735770, overlap 2735758 2735760 AAGCATTTGAAAAAA TTTTTGCAA ATGA CTGCAAAAA TTATTTCATAACTGA CLL_A2626 2735607 - 2735837 + | hypothetical protein CLL_A2627 2735881 - 2736099 + | hypothetical protein TERM 3588 2736130 - 2736183 + T 95 -12.9 -3.31263 | gap 1, opp_overlap 2736139, overlap 2736138 2736139 ACATTTTCTTTCTTT CATAA-AAAATCCCCATGTATAAAGT CAA AGTTTGTACATGGGGACTTTATTATG TTATAAAAGTAAGCT TERM 3589 2736138 - 2736174 + T 100 -10.3 -4.49353 | opp_overlap 2736139, overlap 2736130 2736139 TTTCTTTCATAAAAA ATCCCCATGTATAAAGT CAA AGTTTGTACATGGGGAC TTTATTATGTTATAA TERM 3590 2736139 - 2736173 + T 100 -13.8 -3.28527 | opp_overlap 2736139, overlap 2736138 2736130 TTCTTTCATAAAAAA TCCCCATGTATAAAGT CAA AGTTTGTACATGGGGA CTTTATTATGTTATA TERM 3591 2736173 - 2736139 - T 100 -11.6 -5.24129 | opp_overlap 2736138 2736130 2736139 TTCTTTCATAAAAAA TCCCCATGTATAAAGT CAA AGTTTGTACATGGGGA CTTTATTATGTTATA CLL_A2628 2736328 - 2736206 - | hypothetical protein CLL_A2629 2737374 - 2736319 - | hypothetical protein TERM 3592 2736597 - 2736613 + g 79 -9.5 -3.19246 | TTTCTATTATTTTCA TGCTGAT ATC ATCAGCA TTAAATTCACATTGA CLL_A2630 2739616 - 2737691 - | SEC-C motif domain protein TERM 3593 2739520 - 2739538 + g 71 -2.5 -5.40072 | gap 1, opp_overlap 2739520 2739521, overlap 2739520 2739521 TAATTAAATCAAATA G-TTCATC CTTT GATGAAGC TTTTTTTAAACAACA TERM 3594 2740216 - 2740180 - H 75 -8.1 -3.48036 | overlap 2740183 CATCAGTATAATTAA CAATTCCTAAGGTGCTA AAA CACCCCCTTAGAAATTG CACATAATAGATTAA CLL_A2631 2740385 - 2741413 + | putative ABC transporter, substrate-binding protein CLL_A2632 2741433 - 2742200 + | aliphatic sulfonates import ATP-binding protein SsuB TERM 3595 2742463 - 2742449 - g 74 -8.6 -3.16564 | GCTTCACCTTAGGAA CTGTTC TTG GAACAG CAATTGCCGTAATTT CLL_A2633 2742193 - 2742993 + | ABC transporter, permease protein TERM 3596 2743069 - 2743110 + F 100 -15.7 -4.23007 | opp_overlap 2743077, overlap 2743077 TCACTATACTCACTC TAATAAAAGATTTTTAGAA TTAT TTCTGAAAATCTTTTATTA TTTTGGCGTTATATA TERM 3597 2743077 - 2743102 + F 95 -8.5 -5.093 | opp_overlap 2743077, overlap 2743069 CTCACTCTAATAAAA GATTTTTAGAA TTAT TTCTGAAAATC TTTTATTATTTTGGC TERM 3598 2743102 - 2743077 - f 74 -6.3 -4.65916 | opp_overlap 2743069 2743077 CTCACTCTAATAAAA GATTTTTAGAA TTAT TTCTGAAAATC TTTTATTATTTTGGC TERM 3599 2743176 - 2743188 + F 70 -3.5 -5.38497 | TAAGTGAACTTAATG TATAA AGA TTATA TTTTTTAATTTAAAT TERM 3600 2743307 - 2743323 + G 84 -9.5 -3.6581 | opp_overlap 2743310, overlap 2743305 TCATCTTTCTTTAAC TTACCTG TAC CAGGTAA TATTTTAGGAATGAT CLL_A2634 2743232 - 2743618 + | LrgA family protein CLL_A2635 2743602 - 2744315 + | LrgB family protein TERM 3601 2744419 - 2744377 - T 100 -17.4 -5.10461 | opp_overlap 2744377 TCCATCTAACAAAAA TAGACGTTGTAAAATCAACT TAA AGTTAATTTTACAGCGTCTA TTTTTAAATGGCTAT TERM 3602 2744377 - 2744419 + T 100 -17.4 -4.67755 | opp_overlap 2744377 TCCATCTAACAAAAA TAGACGTTGTAAAATCAACT TAA AGTTAATTTTACAGCGTCTA TTTTTAAATGGCTAT CLL_A2636 2746635 - 2744479 - | DNA topoisomerase TERM 3603 2745157 - 2745173 + g 75 -3.7 -5.43414 | CTTACCGCAAGTTTC CATAACT CTA AGTAATG TTTTTTCTGTATGAT TERM 3604 2746032 - 2746043 + g 70 -3 -5.27476 | GTAATAATACTCTAC CTAT GTTA ATAG TTTTGTTTTCTTCAA TERM 3605 2746139 - 2746151 + g 80 -6.3 -4.93079 | CCTATTCCTGCATCT TGCAA AAA TTGCA TTTCTTTATTTTCTT TERM 3606 2746750 - 2746708 - R 91 -7.3 -5.52079 | gap 1, opp_overlap 2746708 ACATTAAAACAAAAA TAAGGCTAGCTTACTGCA TTCCCGTC TGCAGCAA-CTAACCTTA TTTTTTAGCATCTTT CLL_A2637 2747285 - 2746785 - | TspO/MBR family protein CLL_A2638 2748803 - 2747535 - | sensor histidine kinase TERM 3607 2747639 - 2747663 + g 75 -5.9 -4.81551 | overlap 2747644 CATCACAAGCAATAG GAAAGTTTATT ACA AATAAGTTTTC TTTTTCATCTAACTC CLL_A2639 2750733 - 2749525 - | sensor histidine kinase TERM 3608 2751383 - 2751369 - R 77 -7.2 -4.37737 | TAACTAAAAAGTAAA TTGCTA ATG TAGCAA AACAAATTTTCAATG TERM 3609 2751697 - 2751743 + r 100 -14.2 -4.38273 | opp_overlap 2751701 2751704 2751715, overlap 2751701 2751715 TTATAATTTAGCATA TAAATAAGAGATAAAAAACTAA TAA TTAGTTTTTCATCTCTTATTAA TTTATTCTAATGTCT TERM 3610 2751701 - 2751739 + r 100 -15 -3.73387 | opp_overlap 2751701 2751704 2751715, overlap 2751697 2751715 AATTTAGCATATAAA TAAGAGATAAAAAACTAA TAA TTAGTTTTTCATCTCTTA TTAATTTATTCTAAT TERM 3611 2751739 - 2751701 - R 100 -17.2 -4.09822 | opp_overlap 2751701 2751697 2751715, overlap 2751704 2751715 AATTTAGCATATAAA TAAGAGATAAAAAACTAA TAA TTAGTTTTTCATCTCTTA TTAATTTATTCTAAT TERM 3612 2751736 - 2751704 - R 100 -14.5 -4.16814 | opp_overlap 2751701 2751697 2751715, overlap 2751701 2751715 TTAGCATATAAATAA GAGATAAAAAACTAA TAA TTAGTTTTTCATCTC TTATTAATTTATTCT TERM 3613 2751725 - 2751715 - R 75 -4 -5.48787 | opp_overlap 2751715 2751701 2751697, overlap 2751704 2751701 ATAAGAGATAAAAAA CTAA TAA TTAG TTTTTCATCTCTTAT CLL_A2640 2754032 - 2751750 - | putative membrane protein with similarity to phage infection protein TERM 3614 2752154 - 2752130 - G 70 -2.2 -5.49234 | opp_overlap 2752132, overlap 2752132 2752134 ATATGGAATAAAAAA CATACATTAC TGGAT GTAATGAATA ACTTCCTAAAATCAA CLL_A2641 2756320 - 2754044 - | phage infection protein TERM 3615 2756643 - 2756619 - R 88 -11.7 -2.83715 | opp_overlap 2756625, overlap 2756625 2756638 TTCACTATTATCATA TTAAAATGACT ATA AGTCATTTTAA CAAAAATTGCAACCC TERM 3616 2756637 - 2756625 - R 72 -6.3 -4.37502 | opp_overlap 2756625, overlap 2756619 ATTATCATATTAAAA TGACT ATA AGTCA TTTTAACAAAAATTG TERM 3617 2756766 - 2756725 - R 85 -8.3 -4.7254 | opp_overlap 2756725, overlap 2756709 ATTTCTCATTAAAAA TAACATACGTATAATTATC TACT AATAACTAAACGTATGCTA TATATTAATTTAATA CLL_A2642 2757906 - 2756791 - | glycosyl hydrolase, family 8 CLL_A2643 2758514 - 2757948 - | transglycosylase, SLT family coaE 2759353 - 2758757 - | dephospho-CoA kinase polA 2761991 - 2759376 - | DNA polymerase I TERM 3618 2763566 - 2763550 - g 74 -8.1 -3.62478 | opp_overlap 2763550 TAATCAATCTTTAAA TCATGAA GAT TTCATGA TTGGTACTAAAGACA TERM 3619 2763550 - 2763566 + G 71 -8.1 -3.21099 | opp_overlap 2763550 TAATCAATCTTTAAA TCATGAA GAT TTCATGA TTGGTACTAAAGACA CLL_A2646 2762420 - 2763649 + | aminopeptidase II CLL_A2647 2764343 - 2764206 - | hypothetical protein dcd 2764957 - 2764436 - | deoxycytidine triphosphate deaminase TERM 3620 2765068 - 2765096 + r 79 -9.1 -3.55563 | opp_overlap 2765061 2765092 2765093, overlap 2765092 2765093 AAGTTAAATTTTATT TCTGGTTTATTAT AAT ATAATAAACCAAA TTTGAAAAATCAAAT TERM 3621 2765115 - 2765092 - R 81 -7.6 -4.49353 | opp_overlap 2765068 2765092 2765093 2765097, overlap 2765061 2765093 TTATAATATAATAAA CCAAATTTGA AAAA TCAAATTTGA TCTTTATAAAAATCT TERM 3622 2765093 - 2765114 + r 72 -8.9 -2.71422 | opp_overlap 2765061 2765092 2765093, overlap 2765068 2765092 2765097 TATAATATAATAAAC CAAATTTGA AAAA TCAAATTTG ATCTTTATAAAAATC TERM 3623 2765114 - 2765093 - R 75 -8.9 -3.28527 | opp_overlap 2765068 2765093 2765092 2765097, overlap 2765061 2765092 TATAATATAATAAAC CAAATTTGA AAAA TCAAATTTG ATCTTTATAAAAATC TERM 3624 2765123 - 2765159 + r 82 -4.5 -5.75538 | opp_overlap 2765128, overlap 2765126 2765128 AAATTTGATCTTTAT AAAAATCTAAGGTGCTG TTT TACCACCTTAGATATTA TTTTTATTTTTTAGG TERM 3625 2765126 - 2765156 + r 76 -6.2 -4.8855 | opp_overlap 2765128, overlap 2765123 2765128 TTTGATCTTTATAAA AATCTAAGGTGCTG TTT TACCACCTTAGATA TTATTTTTATTTTTT TERM 3626 2765128 - 2765154 + r 81 -8.8 -3.97385 | opp_overlap 2765128, overlap 2765126 2765123 TGATCTTTATAAAAA TCTAAGGTGCTG TTT TACCACCTTAGA TATTATTTTTATTTT TERM 3627 2765154 - 2765128 - R 88 -8.1 -4.84359 | opp_overlap 2765128 2765126 2765123 TGATCTTTATAAAAA TCTAAGGTGCT GTTTT ACCACCTTAGA TATTATTTTTATTTT TERM 3628 2765237 - 2765205 - R 100 -11.4 -4.10612 | opp_overlap 2765201 2765200, overlap 2765198 ATTTATAACTATAAA GGGATACATTCTCC TTTAT AGAGTATGTATCCC TAAACTTATTATAAA CLL_A2649 2766454 - 2765246 - | isocitrate dehydrogenase, NADP-dependent CLL_A2650 2767600 - 2766590 - | membrane protein TERM 3629 2767621 - 2767634 + r 81 -5.3 -5.42605 | ATCACCTCTAAATCG CTGTT TTTT AACAG TTTTCTTTTTCTTGA CLL_A2651 2768600 - 2767725 - | LysR-family transcriptional regulator TERM 3630 2768702 - 2768679 - R 87 -4 -6.2845 | opp_overlap 2768667 2768679, overlap 2768669 2768667 2768666 AATTATAAAAAAAAA GAATATCA TGTTAATC TGATATTC TTTATCTTTATATTA CLL_A2652 2770613 - 2768844 - | membrane assosiated methyl-accepting chemotaxis protein with hamp domain TERM 3631 2769463 - 2769477 + g 70 -5.8 -4.31459 | opp_overlap 2769465, overlap 2769460 TTTTCTTTATTTGAA TATATC TCT GATATA TTATTTATTGCTTTT TERM 3632 2770592 - 2770602 + g 78 -2.6 -5.90981 | CTCTTTTACTCTTTG TATA AAA TATA TTTTTTTTCATATGA TERM 3633 2770663 - 2770694 + H 72 -7.6 -3.57039 | opp_overlap 2770662 2770661 2770665 2770668 2770671, overlap 2770668 ATTAAATTTGAAATT TATAATAATTAGAA CCGT TTCCAATTATTATA TTATCATTATAAATC CLL_A2653 2771082 - 2772371 + | maltose-binding protein TERM 3634 2772411 - 2772440 + F 95 -10.1 -4.35091 | opp_overlap 2772413, overlap 2772413 GTTTTATGAAGTTTA AATCCATAAGGGG TAAT TCCCTTATGGATG TTTATTATCACTATT TERM 3635 2772413 - 2772438 + F 95 -12.7 -3.76888 | opp_overlap 2772413, overlap 2772411 TTTATGAAGTTTAAA TCCATAAGGGG TAAT TCCCTTATGGA TGTTTATTATCACTA TERM 3636 2772438 - 2772413 - f 95 -12 -3.67976 | opp_overlap 2772413 2772411 TTTATGAAGTTTAAA TCCATAAGGG GTAATT CCCTTATGGA TGTTTATTATCACTA CLL_A2654 2772526 - 2773392 + | ABC transporter, permease protein CLL_A2655 2773392 - 2774297 + | ABC transporter, permease protein TERM 3637 2774337 - 2774314 - T 91 -8.3 -5.03715 | opp_overlap 2774314 ATTATGTGTAAAAAA GATGTTCTT GAAAAA AAGAACATC TTTTTTATTTGGATA TERM 3638 2774314 - 2774337 + T 100 -8.3 -5.65927 | opp_overlap 2774314 ATTATGTGTAAAAAA GATGTTCTT GAAAAA AAGAACATC TTTTTTATTTGGATA CLL_A2656 2775052 - 2774366 - | hypothetical protein TERM 3639 2775211 - 2775174 - R 100 -11 -4.93968 | opp_overlap 2775171 2775174 2775179, overlap 2775176 AGTTATAATGAAAAA CAGTATGTTATTTTAT TTTTAC ATAAAATAACATACTA TAACTTATTCATAAA TERM 3640 2775174 - 2775211 + r 72 -8.8 -2.67428 | opp_overlap 2775174 2775176, overlap 2775171 2775179 AGTTATAATGAAAAA CAGTATGTTATTTTAT TTTTAC ATAAAATAACATACTA TAACTTATTCATAAA TERM 3641 2775209 - 2775176 - R 100 -11.4 -4.08682 | opp_overlap 2775174 2775171 2775179, overlap 2775174 TTATAATGAAAAACA GTATGTTATTTTAT TTTTAC ATAAAATAACATAC TATAACTTATTCATA CLL_A2657 2777283 - 2775247 - | methyl-accepting chemotaxis protein TERM 3642 2777350 - 2777404 + r 71 -5.5 -4.57787 | gap 1, opp_overlap 2777357, overlap 2777357 TCAATACTTTAAATA TAAAA-AATCCCATAAATAGCTTTAT AAAA ATAAAACTATTTATGAGATTATATTA TTTATTTGATATTAT TERM 3643 2777357 - 2777396 + r 86 -9.6 -3.9751 | opp_overlap 2777357, overlap 2777350 TTTAAATATAAAAAA TCCCATAAATAGCTTTAT AAAA ATAAAACTATTTATGAGA TTATATTATTTATTT TERM 3644 2777396 - 2777357 - R 100 -14 -5.56264 | opp_overlap 2777357 2777350 TTTAAATATAAAAAA TCCCATAAATAGCTTTAT AAAA ATAAAACTATTTATGAGA TTATATTATTTATTT CLL_A2658 2779429 - 2777402 - | surface protein PspC TERM 3645 2777841 - 2777851 + g 80 -5.4 -5.34381 | opp_overlap 2777841 CTTGCTGTTAAAGAT CCAT AAG ATGG TTTTTCTTTAGCTTT TERM 3646 2778013 - 2778024 + g 85 -3 -5.95539 | AATCATGACCCGGAT CTAT TACA ATAG TTTTTTTATTTGAAG TERM 3647 2779665 - 2779641 - R 73 -4.4 -5.13344 | ATACCAATAGAAAAA GACCATAAAT ACTTA ATTTATCGTC CTAAATTTCATAGTA CLL_A2659 2780340 - 2779711 - | type IV pilus assembly protein PilZ CLL_A2660 2781968 - 2780673 - | hypothetical protein CLL_A2661 2782493 - 2782068 - | lineage-specific thermal regulator protein CLL_A2662 2783029 - 2782505 - | RNA polymerase sigma factor TERM 3648 2783264 - 2783217 - H 100 -20.4 -4.42653 | opp_overlap 2783220, overlap 2783220 ATTTTATGTATAAAA GAATACTTGCATCTTATAGATT TTAA AATCTATAAGATGCAAGTATTT ATATTAGCTAAATAA TERM 3649 2783220 - 2783261 + H 100 -22.1 -4.21607 | opp_overlap 2783217 2783220 TTATGTATAAAAGAA TACTTGCATCTTATAGATT TTAA AATCTATAAGATGCAAGTA TTTATATTAGCTAAA TERM 3650 2783261 - 2783220 - H 100 -22.1 -4.33182 | opp_overlap 2783220, overlap 2783217 TTATGTATAAAAGAA TACTTGCATCTTATAGATT TTAA AATCTATAAGATGCAAGTA TTTATATTAGCTAAA TERM 3651 2783397 - 2783348 - H 100 -19.3 -3.30854 | opp_overlap 2783351 2783364 2783366, overlap 2783349 2783364 2783377 AACAAGTCATATTAA CTGTTATAGTTTATAATATAATA AAAT TATTATATTATAAACTATAACAA ACATTAAAGGAGAAT TERM 3652 2783396 - 2783349 - H 100 -20.6 -2.5779 | opp_overlap 2783351 2783364 2783366, overlap 2783348 2783364 2783377 ACAAGTCATATTAAC TGTTATAGTTTATAATATAATA AAAT TATTATATTATAAACTATAACA AACATTAAAGGAGAA TERM 3653 2783805 - 2783794 - g 85 -3 -5.95946 | GTAAGAATAAAAAAA TTTC ATAT GAAA GAGGGTTTTTACTCA CLL_A2663 2783416 - 2784204 + | HAD-superfamily hydrolase, subfamily IIB TERM 3654 2784307 - 2784356 + T 70 -6 -4.29928 | gap 1, opp_overlap 2784307 CTTTCTGTATAAAAA GTAACCTATAGGAATAGACAC TTTTTATGT GTGTCTA-TCGTATAGGTTCC TTTTCAATCTTACTT TERM 3655 2784356 - 2784307 - T 76 -6 -4.82901 | gap 1, opp_overlap 2784307 CTTTCTGTATAAAAA GTAACCTATAGGAATAGACAC TTTTTATGT GTGTCTA-TCGTATAGGTTCC TTTTCAATCTTACTT CLL_A2664 2784520 - 2784395 - | hypothetical protein CLL_A2665 2785341 - 2784553 - | hypothetical protein CLL_A2666 2785552 - 2785355 - | hypothetical protein CLL_A2667 2786691 - 2785762 - | hypothetical protein CLL_A2668 2787256 - 2786684 - | specialized sigma subunit of RNA polymerase TERM 3656 2787630 - 2787604 - R 72 -3.9 -5.36441 | gap 1, opp_overlap 2787605 2787607 2787627, overlap 2787607 TTTCTACACAAAAAA TA-AGATAGACT TTTA AGCCTATCTCTA ATTTTAGATTTCTTC TERM 3657 2787626 - 2787607 - R 81 -7.2 -4.77122 | opp_overlap 2787605 2787607, overlap 2787604 CTACACAAAAAATAA GATAGACT TTTA AGCCTATC TCTAATTTTAGATTT TERM 3658 2787886 - 2787867 - R 90 -10.8 -3.42078 | opp_overlap 2787864 TATACTTTATCAGAA CATCCTAC TTTC GTAGGATG GGCTTGTTCATAAAT CLL_A2669 2788178 - 2787918 - | hypothetical protein TERM 3659 2788182 - 2788194 + r 74 -6.3 -4.71061 | opp_overlap 2788182 2788181 AAATTCTTGCATAAG TTCCT TAT AGGAA TTTTTAAGTATCCAT CLL_A2670 2788812 - 2788291 - | putative lipoprotein TERM 3660 2788539 - 2788522 - G 75 -3.5 -5.49234 | gap 1, opp_overlap 2788526, overlap 2788526 AGATTCAATAAAAAA GAATGGAA CTA TTCC-TTC TTTGTAGATACTTGA CLL_A2671 2789335 - 2788796 - | hypothetical protein CLL_A2672 2789812 - 2789363 - | acetyltransferase TERM 3661 2789772 - 2789762 - G 70 -5.4 -4.46926 | opp_overlap 2789762 GACCGTATTATAAAA TAGC TCT GCTA CTTCTTTACAATCTG CLL_A2673 2790326 - 2789835 - | MutT/nudix family protein CLL_A2674 2790644 - 2790384 - | TfoX C- domain superfamily TERM 3662 2790787 - 2790742 - R 100 -14.3 -5.36441 | gap 1, opp_overlap 2790744 TTTCTATATAAAAAA GAGCCTATAGGCATAGACACTT TTT ATATGTCCAT-CCTATAGGCTC AATTACAATTCCTTA CLL_A2675 2791161 - 2790808 - | hypothetical protein CLL_A2676 2791744 - 2791220 - | hypothetical protein CLL_A2677 2792501 - 2791875 - | hypothetical protein TERM 3663 2792454 - 2792431 - G 72 -6.2 -4.43501 | gap 1, opp_overlap 2792431, overlap 2792433 AATGTATTTATAAAA TG-TGAAAATG TTA CATTTTCATCA TACTCTTTATTAATC TERM 3664 2792451 - 2792433 - G 73 -9 -2.54745 | opp_overlap 2792431, overlap 2792431 TGTATTTATAAAATG TGAAAATG TTA CATTTTCA TCATACTCTTTATTA CLL_A2678 2793841 - 2792552 - | hypothetical protein CLL_A2679 2794702 - 2794040 - | BtrU protein TERM 3665 2795005 - 2794970 - R 100 -10.8 -5.16133 | opp_overlap 2794970 ATTAGAATATAAAAA TACCTATAGAATTT AGCTTCAA AAATTCTATAGGTA TTTCTTTTACTCTAA TERM 3666 2794970 - 2795005 + r 100 -10.8 -4.75288 | opp_overlap 2794970 ATTAGAATATAAAAA TACCTATAGAATTT AGCTTCAA AAATTCTATAGGTA TTTCTTTTACTCTAA CLL_A2680 2796310 - 2795012 - | histidine kinase CLL_A2681 2796993 - 2796307 - | regulatory protein VanR CLL_A2682 2797567 - 2797007 - | ribosomal RNA adenine dimethylase TERM 3667 2797757 - 2797741 - R 93 -8 -5.15634 | TACTGCATTAAAAAA GGAACC TATTT GGTTCC CAATAATAATTTATA CLL_A2683 2798190 - 2797864 - | hypothetical protein CLL_A2684 2799401 - 2798274 - | oxidoreductase, FAD/FMN-binding CLL_A2685 2799592 - 2799930 + | transcriptional regulator, HxlR family TERM 3668 2800120 - 2800086 - T 87 -6.6 -5.29445 | TTTCAACAATAAAAA TAGTCTTAGGCAAT TTATATT AATACCTAAGACTA CAAATCTCATTTACT CLL_A2686 2800985 - 2800254 - | hypothetical protein CLL_A2687 2801125 - 2801009 - | hypothetical protein TERM 3669 2801191 - 2801236 + r 95 -10.7 -4.03806 | opp_overlap 2801196, overlap 2801196 TTAGGCAATTATCAT AAAAATAACCCTGCTAGAAAA ATCA TTTTCCAACAGGGTTATTTTA TTTATAAATTTCATT TERM 3670 2801231 - 2801196 - R 100 -15 -4.94902 | opp_overlap 2801191 2801196 CAATTATCATAAAAA TAACCCTGCTAGAAAA ATCA TTTTCCAACAGGGTTA TTTTATTTATAAATT TERM 3671 2801196 - 2801231 + r 100 -10.6 -5.01553 | opp_overlap 2801196, overlap 2801191 CAATTATCATAAAAA TAACCCTGCTAGAAAA ATCA TTTTCCAACAGGGTTA TTTTATTTATAAATT CLL_A2688 2801482 - 2801327 - | hypothetical protein TERM 3672 2802241 - 2802211 - g 90 -8.4 -4.7373 | GTATGCTATTAAAAA TTCACTTTTAGTTG ATC CTACAAAAAGTGAA AAAGATATAATTAAC TERM 3673 2803693 - 2803681 - g 73 -7.7 -3.83026 | overlap 2803666 GGTTTTCATAGGAAA TCCTG GAA CAGGA AAAACAAGTATTGCA CLL_A2689 2801774 - 2805160 + | stage V sporulation protein K TERM 3674 2805279 - 2805289 + T 70 -2.6 -5.63103 | opp_overlap 2805279 AAGTTCTTAAATTTA TTTA TCA TAAA TTTTTTTAATTACAA TERM 3675 2805307 - 2805349 + T 100 -14.4 -4.00934 | opp_overlap 2805306 2805307 TTTTTAATTACAAAT GGGGCTATTTCACAGTGTAT ATA ATAAATTGTGAGATAGTCCC TTTCATGTTTCACAT TERM 3676 2805604 - 2805548 - T 100 -18.8 -2.8474 | opp_overlap 2805548 2805554, overlap 2805554 TTTTATTTATAATTA TCAAAATAAGATTTAATTTATTTTAA CTAAC TAAAAATAAATTAAATCTTATTTTGA TATTTACAATTATAT TERM 3677 2805548 - 2805604 + T 100 -18.8 -3.43081 | opp_overlap 2805548 2805554, overlap 2805554 TTTTATTTATAATTA TCAAAATAAGATTTAATTTATTTTAA CTAAC TAAAAATAAATTAAATCTTATTTTGA TATTTACAATTATAT TERM 3678 2805598 - 2805554 - T 100 -12 -4.37527 | opp_overlap 2805548 2805554, overlap 2805548 TTATAATTATCAAAA TAAGATTTAATTTATTTTAA CTAAC TAAAAATAAATTAAATCTTA TTTTGATATTTACAA TERM 3679 2805554 - 2805598 + T 100 -12 -4.49756 | opp_overlap 2805554 2805548, overlap 2805548 TTATAATTATCAAAA TAAGATTTAATTTATTTTAA CTAAC TAAAAATAAATTAAATCTTA TTTTGATATTTACAA CLL_A2690 2806024 - 2805614 - | putative peptide deformylase CLL_A2691 2806594 - 2806271 - | hypothetical protein CLL_A2692 2807906 - 2806623 - | macrolide-efflux protein TERM 3680 2807865 - 2807898 + g 76 -7.1 -4.30441 | opp_overlap 2807870, overlap 2807870 TTGTCCTATTACCAT TAAGATAAAATTTTT GTTT AAAAGTTTTATTTTA TTTTCCATATTGTCC TERM 3681 2807870 - 2807893 + g 74 -4.8 -5.11836 | opp_overlap 2807870, overlap 2807865 CTATTACCATTAAGA TAAAATTTTT GTTT AAAAGTTTTA TTTTATTTTCCATAT TERM 3682 2807982 - 2807968 - R 75 -7.1 -4.19735 | opp_overlap 2807968 TTTTCTAAAATTAAA CTGCC ATGTA GGCAG TTACTTTTTACTATC TERM 3683 2807968 - 2807982 + r 71 -7.1 -3.86508 | opp_overlap 2807968 TTTTCTAAAATTAAA CTGCC ATGTA GGCAG TTACTTTTTACTATC CLL_A2693 2808639 - 2807983 - | TetR-family transcriptional regulator TERM 3684 2808146 - 2808127 - G 72 -3.6 -5.28176 | opp_overlap 2808133, overlap 2808131 2808133 TTTACTCACAAAAAA TACAGATG GATT CATCCATA CATTCATCAATATAA TERM 3685 2808742 - 2808723 - R 100 -10 -5.60993 | CTTTCTATAAAAAAA GTAGGAGC TTTT GCCCCTAC CATTGAAATCCTTAA CLL_A2694 2809156 - 2808854 - | hypothetical protein CLL_A2695 2809688 - 2809176 - | hypothetical protein CLL_A2696 2810686 - 2809883 - | putative lipoprotein TERM 3686 2810314 - 2810298 - G 77 -9.5 -2.88134 | overlap 2810295 TCAAATATAAGATTA CCTTCAA ATT TTGAAGG AACTAAAATATCCAA TERM 3687 2810862 - 2810834 - R 100 -7.7 -5.34555 | opp_overlap 2810834, overlap 2810861 TTAGAGCATAAAAAA TATTACTGAAA TTTTTCT TTTCAGTAATA TTTAAAATAAATATA TERM 3688 2810834 - 2810862 + r 72 -7.7 -3.61654 | opp_overlap 2810834 2810861 TTAGAGCATAAAAAA TATTACTGAAA TTTTTCT TTTCAGTAATA TTTAAAATAAATATA TERM 3689 2811215 - 2811248 + r 78 -5.6 -5.26907 | CTTCCATTTGTTACT TTACTATTATTTAT CTTTTA ATTAATAATAGTAA TTTTATTTTGTATTA CLL_A2697 2811650 - 2811279 - | hypothetical protein TERM 3690 2811773 - 2811806 + r 100 -9.8 -5.22481 | opp_overlap 2811774 2811778, overlap 2811774 GTTATTTAGTTTAAT ATAAATGCACTAAG CATTAA CTTAGTGCATTTAC TTTTATTTATTTCTA TERM 3691 2811805 - 2811774 - R 100 -14 -3.06492 | opp_overlap 2811773 2811774, overlap 2811778 TTATTTAGTTTAATA TAAATGCACTAAGC ATTA ACTTAGTGCATTTA CTTTTATTTATTTCT TERM 3692 2811774 - 2811805 + r 100 -13.3 -3.71049 | opp_overlap 2811774 2811778, overlap 2811773 TTATTTAGTTTAATA TAAATGCACTAAG CATTAA CTTAGTGCATTTA CTTTTATTTATTTCT TERM 3693 2811801 - 2811778 - R 95 -10.4 -4.20368 | opp_overlap 2811774 2811773, overlap 2811774 TTAGTTTAATATAAA TGCACTAAGC ATTA ACTTAGTGCA TTTACTTTTATTTAT CLL_A2698 2812013 - 2811819 - | hypothetical protein TERM 3694 2811938 - 2811952 + g 71 -4.2 -5.13137 | CTTGTAATCCAAATC CTGATG CAA CCTCAG TTTTTAATTTGTTTA TERM 3695 2812492 - 2812506 + r 73 -2.8 -5.71983 | opp_overlap 2812492, overlap 2812502 TCTATATCCACCATA TCTTAC ATT GGAAGA TTTTTTTCTCCTTAC CLL_A2699 2812620 - 2812471 - | hypothetical protein CLL_A2700 2812798 - 2812685 - | hypothetical protein CLL_A2701 2813122 - 2813439 + | hypothetical protein TERM 3696 2813561 - 2813534 - f 73 -8.7 -2.90573 | opp_overlap 2813529 2813546, overlap 2813533 2813539 TGATTTACATTAAAT TCAAAGATATT GGATAA AATATCTTTGA GGTGATTTAAGTGAA TERM 3697 2813779 - 2813799 + F 100 -9.8 -4.63172 | TAGTTCTCGCACCTA TGGCCTTA CAATC TAAGGCCA TTTTGTAGTTTGCTC TERM 3698 2814184 - 2814145 - f 100 -11 -5.72616 | opp_overlap 2814145 2814171 ATTTATATAAAAAAA TACCCACATCCATAGATC CTAA AATCTATAAATGTGAGTA TTTATATAAGTTAAT CLL_A2702 2814522 - 2814653 + | hypothetical protein TERM 3699 2814667 - 2814633 - T 100 -17.5 -3.58731 | opp_overlap 2814639, overlap 2814639 AAAATATTTTCTAAA GATAAAGACCAAGAT AAATA ATCTTGGTCTTTATC CCTGTTACAAAACAA TERM 3700 2814639 - 2814661 + T 95 -10.7 -3.9777 | opp_overlap 2814633 2814639 TTTTCTAAAGATAAA GACCAAGAT AAATA ATCTTGGTC TTTATCCCTGTTACA TERM 3701 2814661 - 2814639 - T 95 -10.7 -4.32857 | opp_overlap 2814639, overlap 2814633 TTTTCTAAAGATAAA GACCAAGAT AAATA ATCTTGGTC TTTATCCCTGTTACA CLL_A2703 2815540 - 2814710 - | hypothetical protein CLL_A2704 2815718 - 2815566 - | putative transcriptional regulator TERM 3702 2815914 - 2815937 + r 78 -8.4 -3.94002 | opp_overlap 2815909 2815914 2815919 2815929 ATAAAAGATATGGAA TACAATTTAT AATA ATAAATTGTA TTTAATTAAGTCATA TERM 3703 2815937 - 2815914 - R 72 -8.4 -3.24662 | opp_overlap 2815914, overlap 2815909 2815919 2815929 ATAAAAGATATGGAA TACAATTTAT AATA ATAAATTGTA TTTAATTAAGTCATA CLL_A2705 2817664 - 2815943 - | CspA CLL_A2706 2819477 - 2817651 - | CspA TERM 3704 2817973 - 2817959 - G 80 -10 -2.78725 | opp_overlap 2817957, overlap 2817947 2817956 2817961 ATACTCCAGCAACCA CAGCTG TAG CAGCTG AACTTCCTGATACAA CLL_A2707 2819620 - 2819474 - | hypothetical protein TERM 3705 2819688 - 2819651 - R 100 -8.1 -5.55698 | gap 1, opp_overlap 2819651 TATAATGCAAAAAAA TATAACTTAAGAGAATAT ATA AT-TCCCCTTAAGTTATA TTTTTGGATTGTGAA TERM 3706 2819651 - 2819688 + r 70 -5.2 -4.78149 | gap 1, opp_overlap 2819651 TATAATGCAAAAAAA TATAACTTAA-GAGAAT ATATA ATTCCCCTTAAGTTATA TTTTTGGATTGTGAA TERM 3707 2819863 - 2819827 - R 90 -6.7 -5.73978 | opp_overlap 2819827 ACTACAAATAAAAAA GTAAGTGGCATATAGAC TTG ATCTACATGTTACTTAC TTTTTTGTTCAGTAA TERM 3708 2819827 - 2819863 + r 100 -8.2 -5.4833 | opp_overlap 2819827 ACTACAAATAAAAAA GTAAGTGGCATATAGA CTTGA TCTACATGTTACTTAC TTTTTTGTTCAGTAA TERM 3709 2820056 - 2820088 + r 72 -7.9 -3.6144 | opp_overlap 2820056, overlap 2820054 ATATGTACTAAAAAA GTAGTAGTATATAAA ACT TTGATACACTACTAC TACTTTTTTATTTTT TERM 3710 2820088 - 2820056 - R 100 -10.1 -5.17353 | opp_overlap 2820056 2820054 ATATGTACTAAAAAA GTAGTAGTATATAAA ACT TTGATACACTACTAC TACTTTTTTATTTTT TERM 3711 2820262 - 2820303 + r 74 -5.9 -4.70046 | opp_overlap 2820262 2820266, overlap 2820266 ATTATAATATAAAAA GAAAGGGTAGCAAATAAGA TTTC TCCTATCTGCTACCCTTCG TTTTCTAATTTTATG TERM 3712 2820302 - 2820262 - R 100 -13.6 -5.16133 | gap 1, opp_overlap 2820262 2820266, overlap 2820266 ATTATAATATAAAAA GAAAGGGTAGCAAATAAGA TTTC TCCTATCTGCTACCCTT-C GTTTTCTAATTTTAT TERM 3713 2820299 - 2820266 - R 100 -15.5 -5.05037 | opp_overlap 2820262 2820266, overlap 2820262 TAATATAAAAAGAAA GGGTAGCAAATAAGA TTTC TCCTATCTGCTACCC TTCGTTTTCTAATTT TERM 3714 2820266 - 2820299 + r 95 -11.1 -3.79813 | opp_overlap 2820266 2820262, overlap 2820262 TAATATAAAAAGAAA GGGTAGCAAATAAGA TTTC TCCTATCTGCTACCC TTCGTTTTCTAATTT CLL_A2708 2820607 - 2820422 - | LexA DNA binding domain TERM 3715 2820707 - 2820676 - R 100 -11.9 -5.16133 | opp_overlap 2820676 ATTATAACATAAAAA GAACAGTATATAT AATTTA ATATATACTGTTC TTTTTTATGCTTTCT TERM 3716 2820676 - 2820707 + r 100 -11.9 -5.43621 | opp_overlap 2820676 ATTATAACATAAAAA GAACAGTATATAT AATTTA ATATATACTGTTC TTTTTTATGCTTTCT TERM 3717 2821017 - 2820981 - R 74 -8.1 -3.40926 | opp_overlap 2820981, overlap 2820980 ATAACATAAATAAAG GTTAGTGGCATGTATAT TAA ACTTATACGCCACTAAC TTTTTTGTTCAATGG TERM 3718 2820981 - 2821017 + r 85 -6 -5.4833 | opp_overlap 2820981 2820980 ATAACATAAATAAAG GTTAGTGGCATGTA TATTAAACT TATACGCCACTAAC TTTTTTGTTCAATGG TERM 3719 2821254 - 2821225 - R 80 -5.9 -5.17353 | gap 1, opp_overlap 2821223 2821225 2821225 ATATGTACTAAAAAA GTAGTAGTATCTAA AAT TTTGATAC-ACTAC TACTTTTTTATTGTT TERM 3720 2821225 - 2821257 + r 77 -3.5 -5.64873 | opp_overlap 2821225, overlap 2821225 2821223 ATATGTACTAAAAAA GTAGTAGTATCTAAA ATT TTGATACACTACTAC TTTTTTATTGTTCAG CLL_A2709 2822148 - 2821357 - | cell wall binding repeat domain protein TERM 3721 2822200 - 2822182 - R 87 -6 -5.7827 | opp_overlap 2822182 AATATAAAGAAAAAA GGTAGC TAAAACT GCTACC TAAATTACTCTTTAA CLL_A2710 2822378 - 2822205 - | hypothetical protein CLL_A2711 2822626 - 2822390 - | hypothetical protein TERM 3722 2822684 - 2822662 - R 76 -6.3 -4.77165 | opp_overlap 2822670 TTTTGTATAACAAAA GACACCTAC TTAAC GTAAGTGCC TTTAATAAGCTTTAT CLL_A2712 2823762 - 2822701 - | cell adhesion domain-containing protein CLL_A2713 2824989 - 2823808 - | cell adhesion domain-containing protein TERM 3723 2825288 - 2825260 - R 70 -7 -3.69734 | gap 1, opp_overlap 2825268 AATAACTTATCTAAA TTTACA-GAGAAA ATTA TTTCTCATGTAAA ATAGTAGAACTAGTT TERM 3724 2825379 - 2825365 - R 86 -4.3 -5.85737 | AGAGCAATAAAAAAA GACTT ATAAA AAGTC ATATCTATTGCCTGC CLL_A2714 2825584 - 2825426 - | hypothetical protein CLL_A2715 2825892 - 2825584 - | hypothetical protein CLL_A2716 2827139 - 2825907 - | phage tail fiber domain protein CLL_A2717 2827786 - 2827136 - | hypothetical protein TERM 3725 2827459 - 2827469 + g 74 -4 -5.31275 | AAACTTCTACTTGTG CTTT AAT AAAG TTTTTTATCGTAAGC CLL_A2718 2828894 - 2827773 - | hypothetical protein CLL_A2719 2829340 - 2828900 - | hypothetical protein CLL_A2720 2829674 - 2829333 - | hypothetical protein CLL_A2721 2830683 - 2829664 - | hypothetical protein CLL_A2722 2831380 - 2830691 - | hypothetical protein TERM 3726 2831430 - 2831408 - R 91 -8.5 -4.96848 | opp_overlap 2831408 TTTTGCATATAAAAA GCACCTACA ACTAG TGTAAGTGC TTTAAAAATATTTCT CLL_A2723 2832096 - 2831506 - | putative lipoprotein TERM 3727 2831533 - 2831545 + g 71 -2.7 -5.42164 | overlap 2831543 AAATTGAACATAACT TTTTG ATC CAGAA TTTTTATTCTTTATA CLL_A2724 2835196 - 2832137 - | hypothetical protein TERM 3728 2834002 - 2834019 + g 84 -5.7 -5.22943 | TAGTCCATTGTCCTG CTAAATT ATCT AATTTAG TTTTTTCCATTTCAT TERM 3729 2835252 - 2835225 - R 100 -7.8 -6.22691 | opp_overlap 2835225 2835223 TAAGAATAAAAAAAA GGGAGAACTA TTTTTATT TAGTTCCCCC TCTTTGATTTTTCAA CLL_A2725 2835364 - 2835242 - | hypothetical protein CLL_A2726 2835846 - 2835403 - | hypothetical protein TERM 3730 2835920 - 2835895 - R 100 -9.9 -5.47159 | opp_overlap 2835895 2835898 TCTAATAAATAAAAA TAACTGCTAAT TTTA ATCAGCAGTTA TTGGATCAAGTAAAT CLL_A2727 2836329 - 2835907 - | hypothetical protein TERM 3731 2836301 - 2836311 + g 75 -5.4 -4.89054 | CCTGAACAAATTCTA CTTG AAT CAAG TTCTTTTTTTGTAGA CLL_A2728 2837765 - 2836350 - | hypothetical protein CLL_A2729 2837978 - 2837766 - | hypothetical protein CLL_A2730 2838811 - 2837984 - | hypothetical protein CLL_A2731 2839237 - 2838812 - | hypothetical protein CLL_A2732 2839635 - 2839249 - | hypothetical protein CLL_A2733 2839955 - 2839635 - | hypothetical protein CLL_A2734 2840151 - 2839957 - | hypothetical protein TERM 3732 2840209 - 2840184 - R 100 -9.8 -4.90381 | opp_overlap 2840186 TTTAATATAATAAAA GAGCGTGGTT TAAATT AACCACACTC TTAACCTACTGTTGC CLL_A2735 2841247 - 2840210 - | phage protein CLL_A2736 2841599 - 2841261 - | hypothetical protein TERM 3733 2841430 - 2841443 + g 70 -6.7 -3.90586 | overlap 2841424 GTATTAGTTCCATTT GATGG TTTA CCATC TTTATCAACTAATGT CLL_A2737 2842245 - 2841613 - | phage minor structural protein GP20 TERM 3734 2842384 - 2842366 - R 100 -8.2 -5.63236 | opp_overlap 2842360 2842366 AGGTAAAAATAAAAA GCCTTAGA TTT TCTAAGAC TTAATAATTTCTTGT CLL_A2738 2842776 - 2842378 - | hypothetical protein CLL_A2739 2843266 - 2842865 - | phage protein CLL_A2740 2843565 - 2843245 - | hypothetical protein TERM 3735 2843622 - 2843600 - R 86 -7.7 -4.77165 | TTTTGCATAATAAAA GCACCTAGG TTATC CCCAAGTGC TATCAATTCAAAATA CLL_A2741 2843903 - 2843625 - | hypothetical protein TERM 3736 2844053 - 2844027 - R 90 -6 -5.88197 | opp_overlap 2844028 2844043 2844046, overlap 2844028 2844046 TTAAATATAAAAAAA GCATCTACTTAT TTA ATAAGTAAATGT TACTAATCTTTATCT TERM 3737 2844052 - 2844028 - R 86 -9.5 -4.10478 | opp_overlap 2844028 2844043 2844046, overlap 2844027 2844046 TAAATATAAAAAAAG CATCTACTTAT TTA ATAAGTAAATG TTACTAATCTTTATC CLL_A2742 2845041 - 2844031 - | hypothetical protein CLL_A2743 2846553 - 2845054 - | hypothetical protein CLL_A2744 2847905 - 2846553 - | phage terminase, large subunit, pbsx family TERM 3738 2846929 - 2846939 + g 72 -6.8 -4.16371 | ATAGTTTTAGGTTCT GCTG AAT CAGC TTTAATTCTTTCCTG CLL_A2745 2848807 - 2847908 - | pbsx phage terminase small subunit CLL_A2746 2848994 - 2848845 - | hypothetical protein CLL_A2747 2849167 - 2849000 - | hypothetical protein TERM 3739 2849224 - 2849205 - R 93 -7.2 -5.75945 | opp_overlap 2849205 ATTGCGTAAAAAAAA GAACCCTA TTAC TAGAGTTC CTTATAAGTTTTAAC CLL_A2748 2849549 - 2849247 - | spore coat protein CLL_A2749 2849769 - 2849554 - | hypothetical protein CLL_A2750 2850418 - 2849870 - | cotf CLL_A2751 2851116 - 2850445 - | cotJC protein CLL_A2752 2851576 - 2851205 - | hypothetical protein TERM 3740 2851767 - 2851818 + r 100 -11.3 -3.91434 | opp_overlap 2851777 2851781, overlap 2851770 2851775 TTATTATGCATTATT TAGTTCAATATAAATGCACTAAG AATTAA CTTAGTGCATTTACATTTAATTA TTTCTAAAGTCCTTT TERM 3741 2851770 - 2851815 + r 95 -10.8 -4.07877 | opp_overlap 2851777 2851781, overlap 2851767 2851775 TTATGCATTATTTAG TTCAATATAAATGCACTAAG AATTAA CTTAGTGCATTTACATTTAA TTATTTCTAAAGTCC TERM 3742 2851775 - 2851810 + r 95 -10.7 -4.18044 | opp_overlap 2851777 2851781, overlap 2851770 2851767 CATTATTTAGTTCAA TATAAATGCACTAAG AATTAA CTTAGTGCATTTACA TTTAATTATTTCTAA TERM 3743 2851808 - 2851777 - R 95 -13.3 -3.06492 | opp_overlap 2851775 2851770 2851767, overlap 2851781 TTATTTAGTTCAATA TAAATGCACTAAG AATTAA CTTAGTGCATTTA CATTTAATTATTTCT TERM 3744 2851804 - 2851781 - R 89 -9.7 -4.20368 | opp_overlap 2851775 2851770 2851767, overlap 2851777 TTAGTTCAATATAAA TGCACTAAG AATTAA CTTAGTGCA TTTACATTTAATTAT CLL_A2753 2852016 - 2851822 - | hypothetical protein TERM 3745 2851941 - 2851955 + g 71 -4.2 -5.13137 | CTTGTAATCCAAATC CTGATG CAA CCTCAG TTTTTAATTTGTTTA TERM 3746 2852442 - 2852412 - R 93 -6.4 -5.95539 | gap 1, opp_overlap 2852441 TTTTAAATAAAAAAA TACTGCATCTATT AAACTA AATAG-TGCAGTA TAAAACATATTATTT CLL_A2754 2852728 - 2852459 - | hypothetical protein CLL_A2755 2853445 - 2852912 - | hypothetical protein CLL_A2756 2853933 - 2853463 - | hypothetical protein CLL_A2757 2854412 - 2854104 - | hypothetical protein CLL_A2758 2854988 - 2854500 - | hypothetical protein CLL_A2759 2855131 - 2854982 - | hypothetical protein CLL_A2760 2855856 - 2855143 - | BRO domain protein TERM 3747 2855931 - 2855941 + r 82 -5.4 -5.50313 | opp_overlap 2855894, overlap 2855892 2855889 TAGTATTTTTATACT CTCA TAT TGAG TTTTTTACTTTTCTA CLL_A2761 2856977 - 2855946 - | hypothetical protein TERM 3748 2856280 - 2856294 + g 71 -2.8 -5.55769 | overlap 2856282 ATTTTTTGTTGATCC TCTGCA CTT TGCACA TTTTTTCTTATCCAA CLL_A2762 2858004 - 2856997 - | phage integrase CLL_A2763 2858304 - 2858116 - | hypothetical protein CLL_A2764 2859356 - 2858334 - | putative aminotransferase, class V CLL_A2765 2859620 - 2859426 - | hypothetical protein CLL_A2766 2860212 - 2859661 - | hypothetical protein TERM 3749 2860096 - 2860116 + g 71 -4.1 -5.01845 | CTTTGTTCTTTCGTG TTGCATA CAAAAAT TATGCAA TTTTTCATTATTATC CLL_A2767 2860697 - 2860254 - | gp91 CLL_A2768 2861439 - 2860714 - | hypothetical protein CLL_A2769 2861920 - 2861498 - | single-strand binding protein CLL_A2770 2862206 - 2861913 - | hypothetical protein CLL_A2771 2862934 - 2862314 - | phage protein CLL_A2772 2863171 - 2862938 - | hypothetical protein CLL_A2773 2863636 - 2863184 - | hypothetical protein TERM 3750 2863224 - 2863234 + g 73 -5.4 -4.63179 | overlap 2863224 2863227 ATTTCATCTATTTTT GCAT TAA ATGC TTTTAATTCTTCTTT CLL_A2774 2863956 - 2863657 - | hypothetical protein CLL_A2775 2864273 - 2863965 - | hypothetical protein TERM 3751 2864011 - 2864021 + g 71 -4 -5.0538 | ATGCACTTCCAACGC CTTT TAC AAAG TTTTTTCAAATGAAC CLL_A2776 2864548 - 2864270 - | putative glucose-1-phosphatase CLL_A2777 2865350 - 2864529 - | replication initiation protein CLL_A2778 2866073 - 2865363 - | metallo-beta-lactamase domain protein TERM 3752 2865630 - 2865620 - G 70 -5.4 -4.44548 | opp_overlap 2865620, overlap 2865614 TACATTCAATTAAAA TGTG GTC CACA TTTTGAAATTTAGAT TERM 3753 2865996 - 2866027 + g 70 -8.8 -2.72036 | opp_overlap 2866005, overlap 2865993 2866001 GAAGTTAATCCCTAG TTCAAGCAAGAGAA TTTC TTCTCCAGCTTGAA TGATATATGAATTTC CLL_A2779 2866816 - 2866073 - | hypothetical protein CLL_A2780 2868786 - 2866816 - | hypothetical protein CLL_A2781 2869041 - 2868883 - | hypothetical protein CLL_A2782 2869236 - 2869054 - | hypothetical protein CLL_A2783 2869360 - 2869247 - | hypothetical protein CLL_A2784 2869541 - 2869353 - | hypothetical protein CLL_A2785 2869712 - 2869551 - | hypothetical protein CLL_A2786 2870030 - 2869884 - | hypothetical protein CLL_A2787 2870355 - 2870143 - | DNA binding domain, excisionase family protein CLL_A2788 2871099 - 2870356 - | antirepressor, phage associated TERM 3754 2871239 - 2871254 + r 72 -6.2 -4.40561 | opp_overlap 2871239, overlap 2871236 TACCTAATTGATAAA GTTCAA TTTA TTGAAC TTCTTTTTCAAAAAA CLL_A2789 2871464 - 2871246 - | hypothetical protein CLL_A2790 2871629 - 2872012 + | putative phage repressor CLL_A2791 2872181 - 2872663 + | conserved phage protein TERM 3755 2872837 - 2872827 - g 73 -5.4 -4.73828 | AGAACTAAAAAAGAA GCTT TAG AAGC TGGCACAAAAGCTTT CLL_A2792 2872710 - 2873906 + | prophage LambdaBa04, site-specific recombinase, phage integrase family TERM 3756 2873912 - 2873892 - T 90 -6.9 -5.69793 | opp_overlap 2873892 ATATTAAATAAAAAA GAGCAACTA AAA TAGTCACTC TTTTAAATATGTCAA CLL_A2793 2875053 - 2874052 - | hypothetical protein TERM 3757 2874240 - 2874224 - G 75 -8.7 -3.47573 | opp_overlap 2874223, overlap 2874195 2874227 TCAGTCATACCATAA GAAGCAG GAC CTGCTCC CATGTTATCTGGGTG TERM 3758 2874984 - 2875013 + g 70 -6.6 -4.04141 | gap 1 CATCTTCTAGAGTTT TCATTCC-GTACT TTTCT AGTACTGGAGTGA TTTGATTAATTCTTC CLL_A2794 2875768 - 2875079 - | hypothetical protein TERM 3759 2876102 - 2876157 + H 100 -15.1 -3.34894 | opp_overlap 2876111, overlap 2876111 GCGGCACCATTTATT TATAAGAAAGGCTGTATTACTTGGT CTAAGT ACCTTGTAATACAGCCTTTTTTGTA TGTTTGCAACAACTT TERM 3760 2876111 - 2876148 + H 100 -11.4 -5.51046 | opp_overlap 2876111, overlap 2876102 TTTATTTATAAGAAA GGCTGTATTACTTGGT CTAAGT ACCTTGTAATACAGCC TTTTTTGTATGTTTG TERM 3761 2876148 - 2876111 - H 100 -11.4 -4.33417 | opp_overlap 2876102 2876111 TTTATTTATAAGAAA GGCTGTATTACTTGGT CTAAGT ACCTTGTAATACAGCC TTTTTTGTATGTTTG TERM 3762 2876970 - 2876946 - g 81 -10.1 -3.07935 | overlap 2876950 ATGCTATTGACTTAA CCAATACTGCT ATA AGAAGTATTGG AGGAATTGCAAGAGG CLL_A2796 2876642 - 2877412 + | hypothetical protein TERM 3763 2877457 - 2877506 + T 76 -8.3 -3.76759 | opp_overlap 2877466, overlap 2877466 2877478 TCTAAAATTTATTTA TTCTAAAACTCTAAACTTCTT TTCTTCTT AAGAATTTTAGATTTTTAGAA TTTAATACAATTACT TERM 3764 2877700 - 2877649 - T 100 -13.5 -5.1485 | opp_overlap 2877646 2877649 2877654, overlap 2877654 TAATTAATATAAAAA TAAAAGACTGTAATAAGATTTAT TTTTAT ACAAATCTCATTACAGTCTTTTG GTATTTTAATTTTAA TERM 3765 2877649 - 2877700 + T 87 -11.3 -2.95595 | opp_overlap 2877649 2877654, overlap 2877646 2877654 TAATTAATATAAAAA TAAAAGACTGTAATAAGATTTAT TTTTAT ACAAATCTCATTACAGTCTTTTG GTATTTTAATTTTAA TERM 3766 2877654 - 2877695 + T 89 -9 -4.56729 | opp_overlap 2877654 2877649, overlap 2877649 2877646 AATATAAAAATAAAA GACTGTAATAAGATTTAT TTTTAT ACAAATCTCATTACAGTC TTTTGGTATTTTAAT TERM 3767 2877695 - 2877654 - T 100 -13.4 -5.40873 | opp_overlap 2877649 2877646 2877654, overlap 2877649 AATATAAAAATAAAA GACTGTAATAAGATTTAT TTTTAT ACAAATCTCATTACAGTC TTTTGGTATTTTAAT CLL_A2797 2879248 - 2877740 - | ATP-dependent Zn protease TERM 3768 2879763 - 2879790 + r 73 -7.2 -4.15044 | opp_overlap 2879768, overlap 2879768 2879785 TATTTACTATTAAGT TAAGAGAAAAGG TTCA TCTTTTCTTTTA TTTGTTCCCAAGAAA TERM 3769 2879768 - 2879785 + r 74 -4.9 -5.09762 | opp_overlap 2879768, overlap 2879763 ACTATTAAGTTAAGA GAAAAGG TTCA TCTTTTC TTTTATTTGTTCCCA CLL_A2798 2880271 - 2879762 - | phosphoesterase TERM 3770 2880659 - 2880629 - R 75 -5.5 -5.00234 | opp_overlap 2880631, overlap 2880625 TAAAAAATAAAGAAA TATCTAAGGTGCT GTTTT AGCCTCTTAGATA TTCAAACTCATAATC CLL_A2799 2881449 - 2880748 - | integral membrane protein TERM 3771 2881128 - 2881118 - G 70 -3.2 -5.30616 | CCACTTAAACAAAAA GTAG CAG CCAC AATCACATAAAAGCT CLL_A2800 2882217 - 2881621 - | hypothetical protein TERM 3772 2882297 - 2882258 - R 82 -8.8 -4.18018 | opp_overlap 2882259 2882262, overlap 2882259 2882262 CTTTTTCATTTAAAA TTAACCATGCAATATTAA TTTT TTAAAATTGCATGGTCAT TATATTAATCAAACT TERM 3773 2882296 - 2882259 - R 90 -12.3 -3.10597 | opp_overlap 2882259 2882262, overlap 2882258 2882262 TTTTTCATTTAAAAT TAACCATGCAATATTAA TTTT TTAAAATTGCATGGTCA TTATATTAATCAAAC TERM 3774 2882259 - 2882296 + r 90 -10.1 -3.71284 | opp_overlap 2882259 2882258 2882262, overlap 2882262 TTTTTCATTTAAAAT TAACCATGCAATATTAA TTTT TTAAAATTGCATGGTCA TTATATTAATCAAAC TERM 3775 2882293 - 2882262 - R 95 -11.8 -3.69605 | opp_overlap 2882259 2882262, overlap 2882259 2882258 TTCATTTAAAATTAA CCATGCAATATTAA TTTT TTAAAATTGCATGG TCATTATATTAATCA TERM 3776 2882262 - 2882293 + r 90 -11.8 -2.95751 | opp_overlap 2882262 2882259 2882258, overlap 2882259 TTCATTTAAAATTAA CCATGCAATATTAA TTTT TTAAAATTGCATGG TCATTATATTAATCA CLL_A2801 2883018 - 2882302 - | serine/threonine protein kinase CLL_A2802 2883200 - 2883036 - | hypothetical protein CLL_A2803 2883816 - 2883484 - | hypothetical protein CLL_A2804 2885230 - 2883932 - | putative signaling protein TERM 3777 2885044 - 2885058 + g 80 -5.8 -5.14163 | overlap 2885038 2885040 CTAGCAACTTTTCTT TTGAAA GAT TTTCAA TTTTTGTTAATGCCT TERM 3778 2885388 - 2885444 + r 100 -22.3 -4.62203 | opp_overlap 2885360 2885358 2885354 2885350 2885389 2885403, overlap 2885360 2885389 2885403 TTGTAAAAAAATTAA ATATAATATAAAAAAGTTTTGGTGAAA TTC TTTCACCAAAACTTTTTTATATTATGA TTTTAATTATTTACA TERM 3779 2885443 - 2885389 - R 100 -23.6 -4.5187 | opp_overlap 2885360 2885388 2885389 2885403, overlap 2885360 2885358 2885354 2885350 2885403 TGTAAAAAAATTAAA TATAATATAAAAAAGTTTTGGTGAAA TTC TTTCACCAAAACTTTTTTATATTATG ATTTTAATTATTTAC TERM 3780 2885389 - 2885443 + r 100 -25.8 -3.36237 | opp_overlap 2885360 2885358 2885354 2885350 2885389 2885403, overlap 2885360 2885388 2885403 TGTAAAAAAATTAAA TATAATATAAAAAAGTTTTGGTGAAA TTC TTTCACCAAAACTTTTTTATATTATG ATTTTAATTATTTAC TERM 3781 2885429 - 2885403 - R 100 -15.4 -5.53436 | opp_overlap 2885389 2885388 2885403, overlap 2885389 ATATAATATAAAAAA GTTTTGGTGAAA TTC TTTCACCAAAAC TTTTTTATATTATGA TERM 3782 2885403 - 2885429 + r 100 -15.4 -5.5208 | opp_overlap 2885403 2885389, overlap 2885389 2885388 ATATAATATAAAAAA GTTTTGGTGAAA TTC TTTCACCAAAAC TTTTTTATATTATGA CLL_A2805 2885605 - 2885462 - | nitrogen fixation protein NifU TERM 3783 2885827 - 2885773 - R 100 -10.4 -4.90917 | gap 1 AAACTCAATTAAAAA TGCTCCCTCTATAGT-TACAGTT TTATTATTTT AACTGTCTACTATAAAGGGAGCA TATCAATCTCAAGTG CLL_A2806 2887165 - 2885864 - | cytochrome C biogenesis protein transmembrane region family TERM 3784 2887109 - 2887086 - G 76 -8.2 -3.71156 | AAAGGTAATACACAA GGGGATAG AAATGAAA CTATCCCC TCAAAAAATACTAAT trx 2887484 - 2887167 - | thioredoxin TERM 3785 2888006 - 2887989 - g 85 -7.1 -4.85918 | CATCAGATAATAAAA CAGATAA TATT TTATCTG AAAAAAATGTATTAG CLL_A2808 2887772 - 2889580 + | tetanolysin O TERM 3786 2889754 - 2889709 - T 95 -9.3 -4.77986 | opp_overlap 2889712, overlap 2889712 TTAAACACTCAAAAA TAAGGTTAAAATAAACTTAAC TTAC GTATAGTTTATTTTAACCTTT TATTTTAATTATATT TERM 3787 2889712 - 2889751 + T 100 -11 -5.19998 | opp_overlap 2889709 2889712 AACACTCAAAAATAA GGTTAAAATAAACTTAAC TTAC GTATAGTTTATTTTAACC TTTTATTTTAATTAT TERM 3788 2889751 - 2889712 - T 100 -11 -4.47118 | opp_overlap 2889712, overlap 2889709 AACACTCAAAAATAA GGTTAAAATAAACTTAAC TTAC GTATAGTTTATTTTAACC TTTTATTTTAATTAT CLL_A2809 2890429 - 2889773 - | 4Fe-4S ferredoxin, iron-sulfur binding CLL_A2810 2891210 - 2890608 - | hypothetical protein CLL_A2811 2891647 - 2891228 - | hypothetical protein CLL_A2812 2891865 - 2891728 - | hypothetical protein CLL_A2813 2892199 - 2891828 - | hypothetical protein CLL_A2814 2892833 - 2892270 - | hypothetical protein CLL_A2815 2893551 - 2892970 - | hypothetical protein CLL_A2816 2893772 - 2893623 - | hypothetical protein CLL_A2817 2894275 - 2893778 - | hypothetical protein CLL_A2818 2895016 - 2894330 - | hypothetical protein CLL_A2819 2895435 - 2895046 - | hypothetical protein TERM 3789 2895548 - 2895590 + r 100 -16.7 -4.87786 | opp_overlap 2895548 CTAAAGAATAAAAAA TATAACCTGTGATACTAAA TATGT TTTCGTATCACAGGTTATA TTTTTGTAAACTTAA TERM 3790 2895590 - 2895548 - R 100 -16.7 -5.72254 | opp_overlap 2895548 CTAAAGAATAAAAAA TATAACCTGTGATACTAAA TATGT TTTCGTATCACAGGTTATA TTTTTGTAAACTTAA CLL_A2820 2896894 - 2895854 - | hypothetical protein TERM 3791 2897036 - 2897061 + r 74 -4.7 -5.12617 | opp_overlap 2897008 2897039, overlap 2897037 2897039 ATATTGATTTATACT AAAGGAGGAAT ATAC ATTCCTCCTCG TTTTTTAACTACTTG TERM 3792 2897037 - 2897060 + r 76 -8.2 -3.66486 | opp_overlap 2897008 2897039, overlap 2897036 2897039 TATTGATTTATACTA AAGGAGGAAT ATAC ATTCCTCCTC GTTTTTTAACTACTT TERM 3793 2897058 - 2897039 - R 95 -10.8 -3.84825 | opp_overlap 2897039 2897037 2897036, overlap 2897008 TTGATTTATACTAAA GGAGGAAT ATAC ATTCCTCC TCGTTTTTTAACTAC TERM 3794 2897039 - 2897058 + r 90 -10.8 -3.39842 | opp_overlap 2897008 2897039, overlap 2897037 2897036 TTGATTTATACTAAA GGAGGAAT ATAC ATTCCTCC TCGTTTTTTAACTAC CLL_A2821 2897234 - 2897070 - | Spo0E like sporulation regulatory protein TERM 3795 2897311 - 2897335 + r 71 -5.8 -4.62051 | opp_overlap 2897281 2897311, overlap 2897306 TCTTCAAAATAAAAA GAACCCTATT AAATC AATAGAGTTC TTTTATATAGTCTTT TERM 3796 2897335 - 2897311 - R 100 -8.7 -5.45802 | opp_overlap 2897306 2897311, overlap 2897281 TCTTCAAAATAAAAA GAACCCTATTA AAT CAATAGAGTTC TTTTATATAGTCTTT CLL_A2822 2898162 - 2897353 - | hypothetical protein CLL_A2823 2898810 - 2898307 - | acetyltransferase, gnat family TERM 3797 2898874 - 2898831 - R 75 -7.8 -3.85698 | opp_overlap 2898831 2898837, overlap 2898837 CCCTTCTTTCATAAA TAAAAATACATTTAAGTGAC TTTA ATTACTTAAATGTATTTTAA CTTTCAATTATAAAA TERM 3798 2898831 - 2898874 + r 76 -9.3 -2.88054 | opp_overlap 2898831 2898837, overlap 2898837 CCCTTCTTTCATAAA TAAAAATACATTTAAGTGA CTTTAA TTACTTAAATGTATTTTAA CTTTCAATTATAAAA TERM 3799 2898868 - 2898837 - R 87 -6.8 -5.38054 | opp_overlap 2898831 2898837, overlap 2898831 TTTCATAAATAAAAA TACATTTAAGTGAC TTTA ATTACTTAAATGTA TTTTAACTTTCAATT TERM 3800 2898837 - 2898868 + r 80 -8.3 -4.37198 | opp_overlap 2898837 2898831, overlap 2898831 TTTCATAAATAAAAA TACATTTAAGTGA CTTTAA TTACTTAAATGTA TTTTAACTTTCAATT CLL_A2824 2899180 - 2898914 - | hypothetical protein CLL_A2825 2899621 - 2900103 + | hypothetical protein TERM 3801 2900130 - 2900158 + T 100 -12.7 -5.41941 | opp_overlap 2900130 CTTATTTATAAAAAA TAGTAGTTTCTAG CTA TTAGAAACTACTA TTTTTATTTAATTTA TERM 3802 2900158 - 2900130 - T 100 -12 -5.28176 | opp_overlap 2900130 CTTATTTATAAAAAA TAGTAGTTTCTA GCTAT TAGAAACTACTA TTTTTATTTAATTTA CLL_A2826 2901132 - 2900218 - | membrane protein TERM 3803 2900749 - 2900765 + g 74 -2.4 -5.65496 | opp_overlap 2900749 AGTTCCAATAAATAA TATTAT AATAG ATAATA TTTTTATTTTTGATG TERM 3804 2901481 - 2901434 - R 95 -5.8 -6.01369 | opp_overlap 2901478, overlap 2901478 TAAACAATAAAAAAA GCCCTATATTCTCCCGTTTT GAAACCAA AAAACTGAAAAATATATGGC CATTAGGCAATTATT TERM 3805 2901557 - 2901584 + r 75 -8.6 -3.52073 | opp_overlap 2901552 2901543 2901563 ATTAATACTATCTCA TCACAATTGTAA CCAT TTACAACTGTGA TTATAGTATTAAAAA CLL_A2827 2902145 - 2901615 - | hypothetical protein lepB 2902460 - 2902999 + | signal peptidase I TERM 3806 2903134 - 2903103 - T 100 -11.8 -5.8187 | opp_overlap 2903103 GAGCTAATAAAAAAA CTAGGTAGAATCTT ATTA AAGATTTTACCTAG TTTTTTTGATTTAAT TERM 3807 2903103 - 2903134 + T 100 -14 -5.73563 | opp_overlap 2903103 GAGCTAATAAAAAAA CTAGGTAGAATCTT ATTA AAGATTTTACCTAG TTTTTTTGATTTAAT CLL_A2829 2904956 - 2903220 - | 67 kDa myosin-crossreactive streptococcal antigen-like protein TERM 3808 2903877 - 2903856 - G 74 -5.1 -5.00616 | opp_overlap 2903856 TGGGTGTTTAAAAAA TGGTTCTGG ATTT CCAAGACCA ATCTTCTTTTTAGCT TERM 3809 2904059 - 2904073 + g 79 -5 -5.4111 | AATCCTTTATGTGTA TTGCAG TAA CTGTAA TTTTTTCTCCTTCTT TERM 3810 2905213 - 2905176 - R 100 -13.2 -5.32565 | opp_overlap 2905181, overlap 2905168 TAACTAATTAAAAAA TTTAAGCTATAAAAAT TCAATT ATTTTTATAGCTTAAA TAAACTTTAGTATTT TERM 3811 2905181 - 2905208 + r 74 -8.7 -3.08966 | opp_overlap 2905176 AATTAAAAAATTTAA GCTATAAAAAT TCAATT ATTTTTATAGC TTAAATAAACTTTAG CLL_A2830 2905463 - 2905245 - | hypothetical protein TERM 3812 2905618 - 2905568 - H 71 -8.1 -3.09759 | opp_overlap 2905568, overlap 2905571 AATATAGTGAGTCAA TTATTACTATAATATTAATATTA CTTAC TATCATTAATATTATAGTAAAAA TTTATTGACATCATT TERM 3813 2905615 - 2905571 - H 79 -9.8 -2.75891 | opp_overlap 2905568, overlap 2905568 ATAGTGAGTCAATTA TTACTATAATATTAATATTA CTTAC TATCATTAATATTATAGTAA AAATTTATTGACATC TERM 3814 2906387 - 2906369 - g 82 -9 -3.84364 | TAGAAAAGAAATTAA TGAAATGT TTA ACATTTCA ATGCCATATGACGAA CLL_A2831 2905686 - 2906723 + | hypothetical protein TERM 3815 2906766 - 2906720 - T 100 -14.2 -4.87807 | opp_overlap 2906726, overlap 2906721 2906726 2906730 TCAATATACTAAAAA TTAAAATAAAGTAGATATATCA AGT TGATATATCTACTTTATTTTTT CATATTCATTTTGTA TERM 3816 2906765 - 2906721 - T 100 -17.7 -3.516 | opp_overlap 2906726, overlap 2906720 2906726 2906730 CAATATACTAAAAAT TAAAATAAAGTAGATATATCA AGT TGATATATCTACTTTATTTTT TCATATTCATTTTGT TERM 3817 2906760 - 2906726 - T 100 -17.6 -4.80167 | opp_overlap 2906726, overlap 2906721 2906720 2906730 TACTAAAAATTAAAA TAAAGTAGATATATCA AGT TGATATATCTACTTTA TTTTTTCATATTCAT TERM 3818 2906726 - 2906760 + T 100 -17.6 -5.28683 | opp_overlap 2906726 2906721 2906720 2906730 TACTAAAAATTAAAA TAAAGTAGATATATCA AGT TGATATATCTACTTTA TTTTTTCATATTCAT TERM 3819 2906756 - 2906730 - T 100 -14 -4.88646 | opp_overlap 2906726, overlap 2906726 2906721 2906720 AAAAATTAAAATAAA GTAGATATATCA AGT TGATATATCTAC TTTATTTTTTCATAT CLL_A2832 2908163 - 2906892 - | macrolide export ATP-binding/permease protein MacB CLL_A2833 2908891 - 2908154 - | macrolide export ATP-binding/permease protein MacB 2 CLL_A2834 2910329 - 2908881 - | putative HylD family protein CLL_A2835 2911511 - 2910348 - | putative viral A-type inclusion protein TERM 3820 2911716 - 2911743 + r 75 -7.1 -4.29907 | opp_overlap 2911716 TTAGAATTAAAAAAA GATGATTTCTG CTTATT CAGAAATCACC TTTGTATTCTAATAT TERM 3821 2911743 - 2911716 - R 100 -9.3 -5.68023 | opp_overlap 2911716 TTAGAATTAAAAAAA GATGATTTCTG CTTATT CAGAAATCACC TTTGTATTCTAATAT CLL_A2836 2912350 - 2911838 - | BioY protein TERM 3822 2912738 - 2912709 - R 100 -11.7 -5.69068 | gap 1, opp_overlap 2912709 TAAAAATATAAAAAA TAGGCATATGGATA AAT TA-CCATATGCCTA TTTTCTCGTAAATAA TERM 3823 2912709 - 2912738 + r 100 -11.7 -4.4767 | gap 1, opp_overlap 2912709 TAAAAATATAAAAAA TAGGCATATGGATA AAT TA-CCATATGCCTA TTTTCTCGTAAATAA CLL_A2837 2913367 - 2912825 - | rubredoxin/rubrerythrin TERM 3824 2912988 - 2912999 + g 73 -3 -5.4433 | TGTTCTGCATCTACT CTTA ATTG TAAG TTTTTCTTTGTATCT CLL_A2838 2914000 - 2913458 - | rubredoxin/rubrerythrin TERM 3825 2913621 - 2913632 + g 73 -3 -5.4433 | TGTTCTGCATCTACT CTTA ATTG TAAG TTTTTCTTTGTATCT TERM 3826 2914883 - 2914873 - g 74 -2.6 -5.67063 | opp_overlap 2914873 TTCATTAGAAAAAAA TAAA AGC TTTA ATTCTATAGATGAAA CLL_A2839 2914421 - 2915314 + | hypothetical protein TERM 3827 2915384 - 2915349 - T 100 -10 -4.98522 | opp_overlap 2915349 AATTGCATATAAAAA GGTAAACAGTTCTA TAAATTGC TAAAACTGTTTACC TGAATTTTTAATTAT CLL_A2840 2915522 - 2915400 - | hypothetical protein CLL_A2841 2916531 - 2915512 - | pyruvate kinase, barrel domain CLL_A2842 2916712 - 2917197 + | putative lipoprotein TERM 3828 2917256 - 2917200 - f 100 -9.2 -5.2853 | opp_overlap 2917205 2917208 2917210 2917249, overlap 2917205 2917210 TATTGAAAAATAAAA TAAAAGAAATGGATATTTCAAAATAA GACAT TTAATTTGAAATATCCTCTTATTTTA TAAAAATGATTTCAA TERM 3829 2917251 - 2917205 - f 77 -4.7 -5.43329 | opp_overlap 2917205 2917208 2917210 2917249, overlap 2917200 2917210 AAAAATAAAATAAAA GAAATGGATATTTCAAAATAA GACAT TTAATTTGAAATATCCTCTTA TTTTATAAAAATGAT TERM 3830 2917246 - 2917210 - f 95 -11.2 -3.60186 | opp_overlap 2917210 2917208 2917205, overlap 2917205 2917200 TAAAATAAAAGAAAT GGATATTTCAAAATAA GACAT TTAATTTGAAATATCC TCTTATTTTATAAAA TERM 3831 2917210 - 2917246 + F 95 -11.9 -3.75581 | opp_overlap 2917205 2917200 2917210, overlap 2917208 2917205 TAAAATAAAAGAAAT GGATATTTCAAAATAAG ACA TTTAATTTGAAATATCC TCTTATTTTATAAAA CLL_A2843 2917422 - 2918255 + | metal-dependent phosphoesterase CLL_A2844 2918747 - 2918496 - | hypothetical protein TERM 3832 2918765 - 2918755 - R 77 -3.2 -5.80817 | TCTAACATAAAAAAA CCTC CTT GAAG CTAAGATATTCTTAA TERM 3833 2918954 - 2918927 - R 75 -9.3 -2.53112 | opp_overlap 2918927, overlap 2918926 ATTGAACTTAGGAAT GCTAAAATGAG TATAGT CCCATTTTAGC TTGCTCCCAATATAA CLL_A2845 2920488 - 2919097 - | probable M18-family aminopeptidase 1 hprK 2921579 - 2920665 - | HPr(Ser) kinase/phosphatase CLL_A2847 2921783 - 2921595 - | protein YlaC CLL_A2848 2922215 - 2922430 + | hypothetical protein TERM 3834 2922823 - 2922807 - T 100 -10.9 -5.55769 | opp_overlap 2922807 CTGTACAATAAAAAA CACCTCA TAA TGAGGTG TTTTAATTCATAAAC TERM 3835 2922807 - 2922823 + T 100 -10.9 -4.45544 | opp_overlap 2922807 CTGTACAATAAAAAA CACCTCA TAA TGAGGTG TTTTAATTCATAAAC TERM 3836 2922872 - 2922894 + T 85 -9.8 -3.19246 | overlap 2922876 GTTTACTTACATATT CATACCTGCG CCT CGCAGGTGGG TTAAGTTCAACTTAA TERM 3837 2922876 - 2922890 + T 82 -11.4 -2.57013 | overlap 2922872 ACTTACATATTCATA CCTGCG CCT CGCAGG TGGGTTAAGTTCAAC TERM 3838 2922895 - 2922909 + T 73 -5.8 -4.82162 | CGCCTCGCAGGTGGG TTAAGT TCA ACTTAA TTTTGTCTTCTTCTG CLL_A2849 2923489 - 2923091 - | hypothetical protein CLL_A2850 2923754 - 2923503 - | hypothetical protein TERM 3839 2923780 - 2923826 + r 84 -4.8 -5.65496 | gap 1, opp_overlap 2923783, overlap 2923782 TCTTAATTTTTTATA GAACATATAATAAT-TCAACT TCCAAT AGTTGATATTATTATATGCAC TTTTTATTTTTAATG TERM 3840 2923823 - 2923783 - R 83 -9.5 -3.494 | gap 1, opp_overlap 2923782 2923780 TAATTTTTTATAGAA CATATAATAAT-TCAACT TCCAAT AGTTGATATTATTATATG CACTTTTTATTTTTA CLL_A2851 2926138 - 2923853 - | ATP-dependent DNA helicase, UvrD/REP family TERM 3841 2926326 - 2926362 + r 100 -18.5 -3.02581 | opp_overlap 2926326 2926330, overlap 2926330 TGTTCTGTACAAAAA TAAAGATGTATTCTAAA AAA TTTAGAATACATCTTTA TATGCTTATATCTTT TERM 3842 2926362 - 2926326 - R 100 -18.5 -4.82901 | opp_overlap 2926326 2926330, overlap 2926330 TGTTCTGTACAAAAA TAAAGATGTATTCTAAA AAA TTTAGAATACATCTTTA TATGCTTATATCTTT TERM 3843 2926330 - 2926358 + r 100 -14.9 -4.16259 | opp_overlap 2926326 2926330, overlap 2926326 CTGTACAAAAATAAA GATGTATTCTAAA AAA TTTAGAATACATC TTTATATGCTTATAT TERM 3844 2926358 - 2926330 - R 100 -14.9 -4.96501 | opp_overlap 2926330 2926326, overlap 2926326 CTGTACAAAAATAAA GATGTATTCTAAA AAA TTTAGAATACATC TTTATATGCTTATAT CLL_A2852 2926925 - 2926377 - | hypothetical protein TERM 3845 2927170 - 2927129 - R 100 -12.7 -5.92399 | opp_overlap 2927129 2927131 TAACAAAATAAAAAA GCTTTCTTAAATTAAGAAA TATC TTTCTCAATTCAAGAAAAC TTATATTTTTACTAA CLL_A2853 2929581 - 2927182 - | 5-methyltetrahydrofolate--homocysteine methyltransferase TERM 3846 2929166 - 2929176 + g 73 -5.4 -4.66833 | opp_overlap 2929166 TCAATTAAAATTAAA TCTG CAC CAGA TTTTTCACCTTGCAC CLL_A2854 2930257 - 2929571 - | vitamin B12 dependent methionine synthase, activation domain protein TERM 3847 2930232 - 2930208 - G 95 -12.3 -3.80625 | opp_overlap 2930208 TTTTTATAACCTAAA TACCTAAGGAC TTC ATCCTTAGGTA TTTTAAGTTGTTTAA TERM 3848 2930208 - 2930232 + g 95 -11.6 -4.39407 | opp_overlap 2930208 TTTTTATAACCTAAA TACCTAAGGA CTTCA TCCTTAGGTA TTTTAAGTTGTTTAA luxS 2930714 - 2930259 - | S-ribosylhomocysteinase LuxS metF 2931614 - 2930727 - | 5,10-methylenetetrahydrofolate reductase TERM 3849 2931678 - 2931688 + r 73 -2.6 -5.72254 | GATAATGATGCGGCA TAAT ATG ATTA TTTTTTATTCTTTAG TERM 3850 2931810 - 2931786 - R 100 -15.9 -6.15536 | AAGGAATAAAAAAAA TGCCTAAAGGA TAT TCCTTTAGGCA TAATAAACTTCTATG TERM 3851 2932062 - 2932009 - R 86 -9.4 -4.12133 | gap 1, overlap 2932019 2932021 CTAAATAGTAAATAA TCCCTACATATACTTTTACTTACTA GATTT TAGTAAGTAAAAGTATA-ACAGAAA TTGCACTAAAAACAG TERM 3852 2932053 - 2932019 - R 100 -14.7 -2.90486 | overlap 2932009 2932021 AATAATCCCTACATA TACTTTTACTTACTA GATTT TAGTAAGTAAAAGTA TAACAGAAATTGCAC TERM 3853 2932051 - 2932021 - R 93 -12.9 -2.99947 | overlap 2932019 2932009 TAATCCCTACATATA CTTTTACTTACTA GATTT TAGTAAGTAAAAG TATAACAGAAATTGC tagO 2932981 - 2932031 - | UDP-GlcNAc:undecaprenyl-P GlcNAc 1-P transferase TERM 3854 2933339 - 2933312 - R 93 -7.2 -5.76633 | opp_overlap 2933304 2933312, overlap 2933304 CTATACATAAAAAAA GTAGAAACAT TTTTTATC ATGTTTCTAC TCTATAAATAACTAA CLL_A2858 2935109 - 2933361 - | nucleotidase TERM 3855 2935404 - 2935431 + r 87 -11.4 -3.1162 | opp_overlap 2935409, overlap 2935409 ATTTTTACATAAAGA AAAAAGGAACGC TTAC GCGTTCCTTTTA TATTAACCTCTTTGT TERM 3856 2935409 - 2935426 + r 100 -11.3 -4.67608 | opp_overlap 2935409, overlap 2935404 TACATAAAGAAAAAA GGAACGC TTAC GCGTTCC TTTTATATTAACCTC TERM 3857 2935426 - 2935409 - R 100 -11.3 -5.76237 | opp_overlap 2935409 2935404 TACATAAAGAAAAAA GGAACGC TTAC GCGTTCC TTTTATATTAACCTC CLL_A2859 2936075 - 2935434 - | V-type ATPase, D subunit CLL_A2860 2937458 - 2936079 - | V-type ATPase, B subunit CLL_A2861 2939229 - 2937451 - | V-type ATPase, A subunit TERM 3858 2938061 - 2938041 - G 74 -8.3 -3.53563 | ATACTGGTTCTGAAA TATCTCCTC CTG GAGGCGATA CTGCACCGATTGCTG CLL_A2862 2939558 - 2939247 - | ATP synthase (F/14-kDa) subunit CLL_A2863 2940552 - 2939551 - | ATP synthase (C/AC39) subunit CLL_A2864 2941155 - 2940565 - | ATP synthase (E/31 kDa) subunit TERM 3859 2941042 - 2941055 + g 70 -5.3 -4.44748 | TGAAGCAGCCTTTTC TTGCT TTTT AGCAA TTATTTTACTTTTCT CLL_A2865 2941675 - 2941190 - | V-type ATPase, K subunit CLL_A2866 2943623 - 2941689 - | V-type ATPase, I subunit TERM 3860 2942610 - 2942640 + g 75 -5.6 -4.63172 | overlap 2942613 AGCATACATTGATGT TACTGATTCAAATG ATG CATTTAAATCATTA TTTTCTAATTTAATA TERM 3861 2942613 - 2942637 + g 76 -7.3 -4.40732 | overlap 2942610 ATACATTGATGTTAC TGATTCAAATG ATG CATTTAAATCA TTATTTTCTAATTTA TERM 3862 2942805 - 2942819 + g 78 -5.8 -4.82128 | opp_overlap 2942805 2942809 2942816, overlap 2942800 2942808 2942809 ATCCGTCTTTAAAAA TCTATT AGT AATAGA TTTTCTATTTACTAA TERM 3863 2942819 - 2942805 - G 72 -5.8 -4.56775 | opp_overlap 2942805 2942800 2942808 2942809, overlap 2942809 2942816 ATCCGTCTTTAAAAA TCTATT AGT AATAGA TTTTCTATTTACTAA CLL_A2867 2943966 - 2943640 - | V-type sodium ATP synthase subunit G CLL_A2868 2945847 - 2944183 - | radical SAM domain protein TERM 3864 2944594 - 2944630 + gr 72 -7.8 -3.49086 | gap 1, opp_overlap 2944588 2944603, overlap 2944603 TGTGTTAAATTTGCT TTCAAAAAA-TTTAATA ATAT TATTAAACTTTTTTGAA TTATAGTACTTATCT TERM 3865 2944620 - 2944603 - GR 73 -4.3 -5.00616 | opp_overlap 2944603 2944594 TTTGCTTTCAAAAAA TTTAATA ATAT TATTAAA CTTTTTTGAATTATA TERM 3866 2945085 - 2945097 + gr 74 -4.9 -5.07523 | overlap 2945088 2945094 AAATATCCGCTGATA TTTCA AAG TGAAA TTTTGTTTCTGTATC CLL_A2869 2946385 - 2945822 - | hypothetical protein TERM 3867 2946229 - 2946189 - GR 71 -7.1 -3.71148 | opp_overlap 2946199, overlap 2946183 2946199 CAAAATCTATTTAAA TTAAAAAAAAGTGTACATG CAT CATATTCACTTCCTTCTAA CCCCTCTTTATCATT TERM 3868 2946219 - 2946199 - GR 95 -4.7 -6.02546 | opp_overlap 2946199, overlap 2946189 TTAAATTAAAAAAAA GTGTACATG CAT CATATTCAC TTCCTTCTAACCCCT TERM 3869 2946565 - 2946518 - R 89 -9.6 -4.32402 | gap 1, opp_overlap 2946516 2946518, overlap 2946515 2946522 GTTTAATTAAAATAA GAAACTACTCTATAAATATTTAA ACA CTTAAT-TTTATAGAGCAGTTTC TATTTTACTTTTAAA CLL_A2870 2947880 - 2946576 - | hypothetical protein spoVB 2948077 - 2949576 + | stage V sporulation protein B TERM 3870 2949684 - 2949648 - T 100 -12.6 -5.24799 | opp_overlap 2949648 TCATAAACATAAAAA GTTCATGTTTCTAAAT TCTAC ATTTAGAAGCATGAAC TTTTTCTTTAATTAT TERM 3871 2949648 - 2949684 + T 100 -14.8 -5.39681 | opp_overlap 2949648 TCATAAACATAAAAA GTTCATGTTTCTAAAT TCTAC ATTTAGAAGCATGAAC TTTTTCTTTAATTAT CLL_A2872 2951373 - 2949766 - | stage V sporulation protein B TERM 3872 2950185 - 2950169 - G 77 -9.5 -2.79248 | opp_overlap 2950172, overlap 2950166 ACCAATATGTAATTA GTAGCTA TCT TAGCTAC TATACCTATCATAAA TERM 3873 2951256 - 2951268 + g 76 -9.1 -2.9953 | overlap 2951252 TTTGATATATTCCAA GGCCT TCA AGGCC TATCGTTCTCCTTAA CLL_A2873 2952351 - 2951383 - | pseudouridine synthase, RluA family CLL_A2874 2953564 - 2952383 - | thermostable carboxypeptidase 1 TERM 3874 2952929 - 2952953 + g 71 -8.7 -2.83715 | opp_overlap 2952934, overlap 2952931 2952934 CACTATATGACTAGC TACAACAATAG GAT CAATTGTTGTA TGTGGTGCTGCTCCA CLL_A2875 2955729 - 2953591 - | cell division protein FtsA TERM 3875 2955967 - 2955929 - R 93 -9.1 -4.91109 | TTTCCAGCATAAAAA TAGCATAAAAATGAAGC ATTAA ACTCCATTCCTATGCTA TTTACTTTTCTTTTT CLL_A2876 2956084 - 2955965 - | hypothetical protein CLL_A2877 2958265 - 2956259 - | ATP-dependent helicase TERM 3876 2957850 - 2957884 + g 87 -9.6 -3.98159 | overlap 2957853 CCTAGTCTTATCCTT GAAGTTTTATATAATG ATA TATTATTTAAAACTTC TTTAATCTTATCCTC pncB 2958449 - 2959927 + | putative nicotinate phosphoribosyltransferase TERM 3877 2959949 - 2959972 + T 100 -11.2 -5.37043 | opp_overlap 2959949 AAATTTTATAAAAAA CATCCTATAT TTAA ATATAGGATG TTTTTTATATCCACT TERM 3878 2959972 - 2959949 - T 100 -11.2 -5.28826 | opp_overlap 2959949 AAATTTTATAAAAAA CATCCTATAT TTAA ATATAGGATG TTTTTTATATCCACT CLL_A2879 2960192 - 2959986 - | hypothetical protein TERM 3879 2960444 - 2960392 - R 93 -8.9 -4.83518 | opp_overlap 2960392 2960401 2960404 2960406 2960423 2960424, overlap 2960404 2960429 AAGAATAATATAAAA TCTTCAATTAAATAGCTTTATTTTT TAT AAAAATAAAGCTATACTATTAAAAA TTAATAGTATAGCTT TERM 3880 2960432 - 2960404 - R 100 -13.5 -3.922 | opp_overlap 2960401 2960392 2960404 2960406 2960423 2960424, overlap 2960392 2960429 AAATCTTCAATTAAA TAGCTTTATTTTT TAT AAAAATAAAGCTA TACTATTAAAAATTA TERM 3881 2960404 - 2960432 + r 91 -13.5 -2.74999 | opp_overlap 2960404 2960392 2960429, overlap 2960401 2960392 2960406 2960423 2960424 AAATCTTCAATTAAA TAGCTTTATTTTT TAT AAAAATAAAGCTA TACTATTAAAAATTA TERM 3882 2960406 - 2960430 + r 88 -11.7 -2.91728 | opp_overlap 2960404 2960392 2960429, overlap 2960404 2960401 2960392 2960423 2960424 ATCTTCAATTAAATA GCTTTATTTTT TAT AAAAATAAAGC TATACTATTAAAAAT TERM 3883 2960423 - 2960463 + r 70 -7.1 -3.70826 | opp_overlap 2960404 2960392 2960429, overlap 2960406 2960404 2960401 2960392 2960424 TTTATTTTTTATAAA AATAAAGCTATACTATTAA AAA TTAATAGTATAGCTTAAGA TTCTAGTTATTTTTA TERM 3884 2960424 - 2960462 + r 82 -10.6 -2.80869 | opp_overlap 2960404 2960392 2960429, overlap 2960406 2960404 2960401 2960392 2960423 TTATTTTTTATAAAA ATAAAGCTATACTATTAA AAA TTAATAGTATAGCTTAAG ATTCTAGTTATTTTT TERM 3885 2960457 - 2960429 - R 100 -14.9 -4.96501 | opp_overlap 2960406 2960404 2960401 2960392 2960424 2960423, overlap 2960404 2960392 TTTTATAAAAATAAA GCTATACTATTAA AAA TTAATAGTATAGC TTAAGATTCTAGTTA CLL_A2880 2960783 - 2960466 - | hypothetical protein TERM 3886 2960539 - 2960553 + g 72 -5.8 -4.48877 | GCTTTTTCTAATACC TTTTGA TTA TCAAAA TTTTCTACATCTTTG TERM 3887 2960809 - 2960826 + r 77 -4.9 -5.37043 | CTCCTCATACATGAG CTGCTTA ATTA TAAGTAG TTTTTTATATAACGT CLL_A2881 2961349 - 2961032 - | hypothetical protein TERM 3888 2961546 - 2961590 + H 86 -9.1 -4.43213 | opp_overlap 2961551 2961554 2961557, overlap 2961543 2961551 CTACCTATTTCATTA TTAAGTAATAATAATAATTGA CTT TTAATTATTATTATTATATAA TTTTAATATATTACA TERM 3889 2961551 - 2961585 + H 90 -11.2 -3.13592 | opp_overlap 2961551 2961554 2961557, overlap 2961543 2961546 TATTTCATTATTAAG TAATAATAATAATTGA CTT TTAATTATTATTATTA TATAATTTTAATATA TERM 3890 2961585 - 2961551 - H 72 -9 -2.52834 | opp_overlap 2961543 2961546 2961551, overlap 2961554 2961557 TATTTCATTATTAAG TAATAATAATAATTGA CTT TTAATTATTATTATTA TATAATTTTAATATA TERM 3891 2961810 - 2961794 - g 70 -5.2 -4.55118 | CAACTGTATATAAAA CACTAA AAACG TTAGTG GATGTAGGACTTATC CLL_A2882 2961610 - 2962041 + | transcriptional regulator, Fur family TERM 3892 2962056 - 2962045 - f 70 -3 -5.54338 | overlap 2962053 CAATTAAAATAAAAA GAAA TGAA TTTC AAATATACCCATTTT TERM 3893 2962109 - 2962053 - f 100 -11.4 -3.8823 | opp_overlap 2962060 2962085, overlap 2962045 2962060 ATAAAAAGAAATGAA TTTCAAATATACCCATTTTTAATAAT CTTAT ATTATTAAAAATGGGTATATTTTTTA TAAATTTAGAATTAA TERM 3894 2962102 - 2962060 - f 100 -18.3 -3.70505 | opp_overlap 2962060 2962085, overlap 2962053 GAAATGAATTTCAAA TATACCCATTTTTAATAAT CTTAT ATTATTAAAAATGGGTATA TTTTTTATAAATTTA TERM 3895 2962060 - 2962102 + F 100 -18.3 -5.33866 | opp_overlap 2962060 2962053, overlap 2962085 GAAATGAATTTCAAA TATACCCATTTTTAATAAT CTTAT ATTATTAAAAATGGGTATA TTTTTTATAAATTTA CLL_A2883 2962166 - 2963077 + | hypothetical protein TERM 3896 2963096 - 2963081 - T 100 -11.8 -5.70761 | AAAATAAAATAAAAA GGCCGC TAAT GCGGCC TAAAAGGGGGATGGG TERM 3897 2963117 - 2963145 + T 82 -9.1 -4.10925 | GGGGGATGGGGGGGT GCTTAATAAAAAA ATA TCTTTTATTAAGC TTTTGGAGAATATGT CLL_A2884 2963822 - 2963214 - | hypothetical protein CLL_A2885 2964760 - 2964251 - | hypothetical protein TERM 3898 2964841 - 2964886 + r 83 -6.4 -5.10665 | opp_overlap 2964845 2964850, overlap 2964844 2964850 CACTATTTTTAAAAT AAAATAAAACTCCATCAAAA AATTAA TTTTGATGGAGTTTTAACTC TTTTATTTATTAAAT TERM 3899 2964844 - 2964883 + r 90 -12.5 -3.08374 | opp_overlap 2964845 2964850, overlap 2964841 2964850 TATTTTTAAAATAAA ATAAAACTCCATCAAAA AATTAA TTTTGATGGAGTTTTAA CTCTTTTATTTATTA TERM 3900 2964882 - 2964845 - R 100 -16 -5.08255 | opp_overlap 2964844 2964841 2964850, overlap 2964850 ATTTTTAAAATAAAA TAAAACTCCATCAAAA AATTAA TTTTGATGGAGTTTTA ACTCTTTTATTTATT TERM 3901 2964877 - 2964850 - R 100 -11.5 -5.40279 | opp_overlap 2964844 2964841 2964850, overlap 2964845 TAAAATAAAATAAAA CTCCATCAAAA AATTAA TTTTGATGGAG TTTTAACTCTTTTAT TERM 3902 2964850 - 2964877 + r 100 -11.5 -4.36485 | opp_overlap 2964850 2964845, overlap 2964844 2964841 TAAAATAAAATAAAA CTCCATCAAAA AATTAA TTTTGATGGAG TTTTAACTCTTTTAT CLL_A2886 2965540 - 2964944 - | GTP-binding protein lon 2967863 - 2965530 - | ATP-dependent protease La TERM 3903 2965854 - 2965869 + g 76 -9 -3.0218 | overlap 2965845 ACCATCTTTAGGTAC TGCACC TTCT GGTGCA TGTATATGAATATCT TERM 3904 2968191 - 2968166 - R 100 -12.1 -5.35721 | opp_overlap 2968168 ATATAAGAACAAAAA TACTGATATCT ATTT AGATATCAGTA TTAAGATTAAGCTGA TERM 3905 2968168 - 2968189 + r 85 -10.3 -3.09671 | opp_overlap 2968166 ATAAGAACAAAAATA CTGATATCT ATTT AGATATCAG TATTAAGATTAAGCT clpX 2969487 - 2968198 - | ATP-dependent Clp protease, ATP-binding subunit ClpX TERM 3906 2968701 - 2968720 + g 72 -5.1 -4.88288 | GAGCACCAAATCCCA TAGAACT TTTTCT AGTTCTA TTTTCTATTATTTTA clpP 2970126 - 2969527 - | ATP-dependent Clp protease, proteolytic subunit ClpP TERM 3907 2969676 - 2969697 + g 70 -7.5 -3.41738 | opp_overlap 2969681, overlap 2969674 2969675 2969676 CACTTAAAATCTTGT TTAAAGATT CTTT AATCTTTAA TATTCTATTAGCATG TERM 3908 2969839 - 2969824 - G 73 -5.4 -4.80882 | ACTTGATAGTAAAAA TGCTCC CATA GAAGCA GCCATACCTACACAT TERM 3909 2970246 - 2970219 - R 100 -14.4 -3.70469 | opp_overlap 2970219, overlap 2970222 AATCATAATTTGAAA TAATTGCCAGAA ATAC TTCTGGCAATTA TTTTTCAAACTATAA TERM 3910 2970219 - 2970246 + r 100 -14.4 -4.61231 | opp_overlap 2970219 2970222 AATCATAATTTGAAA TAATTGCCAGAA ATAC TTCTGGCAATTA TTTTTCAAACTATAA TERM 3911 2970243 - 2970222 - R 100 -11.7 -3.97689 | opp_overlap 2970219, overlap 2970219 CATAATTTGAAATAA TTGCCAGAA ATAC TTCTGGCAA TTATTTTTCAAACTA tig 2971561 - 2970278 - | trigger factor CLL_A2891 2972451 - 2971654 - | putative secreted protein CLL_A2892 2972756 - 2972550 - | hypothetical protein TERM 3912 2972977 - 2972999 + H 90 -7.8 -5.0538 | TGAACATAATATTTA GTCTGCAT TTTAATT ATGCAGAC TTTTTTAGAATAAAC CLL_A2893 2973075 - 2973845 + | histidinol phosphate phosphatase HisJ family TERM 3913 2973918 - 2973948 + T 95 -10.7 -4.21989 | opp_overlap 2973901 2973918, overlap 2973901 CTATTTTCATAAAAA GAGCTATTTTGAA TTCAC TTTAAAATAGCTC TTTATTCAGATTATA TERM 3914 2973948 - 2973918 - T 88 -8.5 -4.84359 | opp_overlap 2973901 2973918, overlap 2973901 CTATTTTCATAAAAA GAGCTATTTTGAA TTCAC TTTAAAATAGCTC TTTATTCAGATTATA CLL_A2894 2974491 - 2973985 - | diamine acetyltransferase 1 TERM 3915 2974569 - 2974537 - R 75 -7 -4.371 | opp_overlap 2974540, overlap 2974540 TTTAGTATACCAAAA TAAGCATCTAGAGG ATATG CCCCAAGATGCTTT TATCACACATATTTT TERM 3916 2974540 - 2974566 + r 75 -6.5 -4.38154 | opp_overlap 2974537 2974540 AGTATACCAAAATAA GCATCTAGAGG ATATG CCCCAAGATGC TTTTATCACACATAT TERM 3917 2974566 - 2974540 - R 84 -8.7 -4.29905 | opp_overlap 2974540, overlap 2974537 AGTATACCAAAATAA GCATCTAGAGG ATATG CCCCAAGATGC TTTTATCACACATAT CLL_A2895 2975448 - 2974597 - | DegV family protein TERM 3918 2975603 - 2975549 - R 74 -8.8 -3.00022 | opp_overlap 2975555 2975558, overlap 2975555 TTTATCTTATACATA CTAAAAGAAGGTGTAGCAACATATAA TAC TTCTATATTGCTGTACCTTCTTCTTG TTAATAAATTAGATT TERM 3919 2975597 - 2975555 - R 82 -8.6 -4.41353 | opp_overlap 2975555 2975558, overlap 2975549 TTATACATACTAAAA GAAGGTGTAGCAACATATAA TAC TTCTATATTGCTGTACCTTC TTCTTGTTAATAAAT TERM 3920 2975555 - 2975597 + r 95 -10.8 -3.99775 | opp_overlap 2975555 2975549, overlap 2975558 TTATACATACTAAAA GAAGGTGTAGCAACATATAA TAC TTCTATATTGCTGTACCTTC TTCTTGTTAATAAAT TERM 3921 2975558 - 2975594 + r 71 -6.7 -4.1157 | opp_overlap 2975555 2975549, overlap 2975555 TACATACTAAAAGAA GGTGTAGCAACATATAA TAC TTCTATATTGCTGTACC TTCTTCTTGTTAATA CLL_A2896 2976154 - 2975717 - | ACT domain protein thrB 2977050 - 2976154 - | homoserine kinase thrC 2978517 - 2977054 - | threonine synthase CLL_A2899 2979572 - 2978634 - | hypothetical protein CLL_A2900 2979967 - 2980950 + | lipase TERM 3922 2980930 - 2980971 + T 100 -14.9 -4.86621 | opp_overlap 2980935, overlap 2980935 TTAAGATTTATAGTA AAAAATTCTCCATTATATT AATT AATATAATGGAGAATTTTA TTTTTAATTCAAACT TERM 3923 2980966 - 2980935 - T 100 -14.8 -5.22312 | opp_overlap 2980930 2980935 ATTTATAGTAAAAAA TTCTCCATTATATT AATT AATATAATGGAGAA TTTTATTTTTAATTC TERM 3924 2980935 - 2980966 + T 100 -14.8 -5.34655 | opp_overlap 2980935, overlap 2980930 ATTTATAGTAAAAAA TTCTCCATTATATT AATT AATATAATGGAGAA TTTTATTTTTAATTC CLL_A2901 2982168 - 2981026 - | Ion channel family TERM 3925 2981767 - 2981800 + g 78 -9.3 -3.10537 | opp_overlap 2981750 2981772, overlap 2981772 ATAAAAAAAATTTTC TATAATAAATTTATT AAAC AATGAATTTATTATA TATACTTTTCCAGTA TERM 3926 2982001 - 2982027 + g 74 -2.4 -5.64328 | GTTTATTTTATTATC GTTAAAAAAACT TTC ATTTTTTATAAC TTTTATTTTTTTGTT CLL_A2902 2982795 - 2982238 - | hypothetical protein TERM 3927 2983257 - 2983215 - R 83 -7.2 -5.01811 | opp_overlap 2983213 2983215 TTATTAAACCAAAAA GAACTAAATCTGAATAATTA AAT TACTCTATCAGATTTAGTTC TGTTACATTGTTATA CLL_A2903 2984079 - 2983282 - | anaerobic Cobalt chelatase, CbiK hemL 2985352 - 2984069 - | glutamate-1-semialdehyde-2,1-aminomutase hemB 2986369 - 2985404 - | delta-aminolevulinic acid dehydratase CLL_A2906 2987847 - 2986372 - | uroporphyrinogen III synthase/methyltransferase hemC 2988934 - 2988062 - | porphobilinogen deaminase TERM 3928 2988522 - 2988532 + g 70 -5.4 -4.51174 | opp_overlap 2988522 ACTATCTCTAAATCA CTTC TTA GAAG TTTTAGTTGTGCTGC TERM 3929 2988817 - 2988829 + g 77 -4.9 -5.25893 | opp_overlap 2988826, overlap 2988826 TTCTGTCACCCTCAG TTACT ATA AGTAA TTTTTTACTATCTAT CLL_A2908 2989659 - 2988985 - | precorrin-2 dehydrogenase hemA 2990822 - 2989617 - | glutamyl-tRNA reductase TERM 3930 2991152 - 2991184 + r 74 -5 -5.2112 | opp_overlap 2991152 TCTATATATTAAAAA GTTCAAGTTGTA TAAAATAAT TACTACTTGAAC TTTTTTAATACTATT TERM 3931 2991184 - 2991152 - R 70 -5 -4.84527 | opp_overlap 2991152 TCTATATATTAAAAA GTTCAAGTTGTA TAAAATAAT TACTACTTGAAC TTTTTTAATACTATT CLL_A2910 2992079 - 2991222 - | anaerobic sulfite reductase subunit C CLL_A2911 2992437 - 2993078 + | undecaprenyl pyrophosphate synthetase TERM 3932 2993139 - 2993114 - T 74 -6.3 -4.67755 | opp_overlap 2993114 ATATTTATGTAAAAA GCTATTTCA TTTAATTT TGAAATAGC TTTTTTTTGAGTTCA TERM 3933 2993114 - 2993139 + T 90 -6.3 -5.86332 | opp_overlap 2993114 ATATTTATGTAAAAA GCTATTTCA TTTAATTT TGAAATAGC TTTTTTTTGAGTTCA TERM 3934 2993417 - 2993405 - T 70 -6.3 -4.24294 | opp_overlap 2993412 ACTAAGCACTTAAAA TTCCT ATT AGGAA TACCTGTTATTATCA CLL_A2912 2994831 - 2993479 - | sodium transporter family protein TERM 3935 2995097 - 2995061 - R 82 -4.6 -5.74122 | gap 1, opp_overlap 2995064 2995096, overlap 2995064 TATCACATAAAAAAA TAACAAAACCCCATCAA TTAA TCGCTGAGGTTTTG-TA TTGTTAATATTTATG TERM 3936 2995095 - 2995064 - R 100 -8.8 -4.92669 | opp_overlap 2995064, overlap 2995061 CACATAAAAAAATAA CAAAACCCCATCAA TTAA TCGCTGAGGTTTTG TATTGTTAATATTTA metA 2996114 - 2995194 - | homoserine O-succinyltransferase CLL_A2914 2996487 - 2997545 + | hypothetical protein TERM 3937 2997553 - 2997573 + T 100 -11.3 -5.99154 | opp_overlap 2997553 TTGAATAATAAAAAA TCCAACTAA TTT TTAGTTGGA TTTTTTTATTTAGTG TERM 3938 2997573 - 2997553 - T 100 -11.3 -5.64873 | opp_overlap 2997553 TTGAATAATAAAAAA TCCAACTAA TTT TTAGTTGGA TTTTTTTATTTAGTG CLL_A2915 2998496 - 2997693 - | phosphatase YidA CLL_A2916 2998748 - 2999371 + | putative sporulation protein YtaF TERM 3939 2999380 - 2999436 + T 100 -18 -3.80083 | gap 1, opp_overlap 2999364 2999387, overlap 2999387 TCTATAAATCCTATC TATAAAAGAGCTGTATGAAAATAATTT TTTT AAATTACT-TCATACAGCTCTTTTATA TTTGGGTTAAATTTT TERM 3940 2999387 - 2999429 + T 100 -11.7 -4.81359 | gap 1, opp_overlap 2999387, overlap 2999380 ATCCTATCTATAAAA GAGCTGTATGAAAATAATTT TTTT AAATTACT-TCATACAGCTC TTTTATATTTGGGTT TERM 3941 2999429 - 2999387 - T 100 -13.9 -4.42653 | gap 1, opp_overlap 2999387 2999380 ATCCTATCTATAAAA GAGCTGTATGAAAATAATTT TTTT AAATTACTT-CATACAGCTC TTTTATATTTGGGTT cobQ 3001024 - 2999519 - | cobyric acid synthase CobQ CLL_A2918 3002340 - 3001264 - | threonine-phosphate decarboxylase cobD 3003283 - 3002333 - | cobalamin biosynthesis protein CobD CLL_A2920 3004011 - 3003403 - | phosphoglycerate mutase family protein CLL_A2921 3004417 - 3004004 - | hypothetical protein cobS 3005290 - 3004532 - | cobalamin-5-phosphate synthase CLL_A2923 3005853 - 3005299 - | hypothetical protein CLL_A2924 3006388 - 3005855 - | ATP:corrinoid adenosyltransferase BtuR/CobO/CobP TERM 3942 3006625 - 3006587 - R 76 -8.5 -3.68416 | gap 1, opp_overlap 3006589, overlap 3006581 3006589 3006592 TCAAAATAATTATAA CATAAGCCAATGATA-TA TTAT TACTATCATTGGCTTATT TATTGTTTCCTTAAT TERM 3943 3006623 - 3006589 - R 93 -11.1 -3.40342 | gap 1, opp_overlap 3006589, overlap 3006581 3006587 3006592 AAAATAATTATAACA TAAGCCAATGATA-TA TTAT TACTATCATTGGCTTA TTTATTGTTTCCTTA TERM 3944 3006589 - 3006623 + r 100 -11.1 -4.62669 | gap 1, opp_overlap 3006581 3006587 3006589 3006592 AAAATAATTATAACA TAAGCCAATGATA-TA TTAT TACTATCATTGGCTTA TTTATTGTTTCCTTA TERM 3945 3006620 - 3006592 - R 76 -8.4 -3.80597 | gap 1, opp_overlap 3006589, overlap 3006589 3006587 ATAATTATAACATAA GCCAATGATA-TA TTAT TACTATCATTGGC TTATTTATTGTTTCC CLL_A2925 3008244 - 3006673 - | glycine betaine/carnitine/choline transport system permease protein opucb CLL_A2926 3009373 - 3008246 - | glycine betaine/L-proline ABC transporter, ATP-binding protein TERM 3946 3009261 - 3009246 - G 71 -7.6 -3.58343 | opp_overlap 3009233 3009246 TTTATCATTTTTAAA GTGGTA GTTT TACCAC AACCGCTTTCACCAA TERM 3947 3009399 - 3009430 + r 77 -7.5 -4.07687 | opp_overlap 3009399 CCTCTTTTTTGCAAA GTAACAACCTTAT TGTATC ATAAAGTTGTTAC TTTTGGCAAAAAAAT TERM 3948 3009430 - 3009399 - R 83 -9.7 -3.53012 | opp_overlap 3009399 CCTCTTTTTTGCAAA GTAACAACCTTAT TGTATC ATAAAGTTGTTAC TTTTGGCAAAAAAAT TERM 3949 3009470 - 3009445 - R 70 -3.3 -5.40072 | overlap 3009449 CTTTTGGCAAAAAAA TAAAGACAACC TACT GATTGCCTCCA TTAAAATCATTATGG TERM 3950 3009466 - 3009449 - R 70 -4.1 -5.20328 | overlap 3009445 TGGCAAAAAAATAAA GACAACC TACT GATTGCC TCCATTAAAATCATT CLL_A2927 3010106 - 3009480 - | transcriptional regulator, GntR family TERM 3951 3010120 - 3010154 + r 100 -14 -3.84284 | opp_overlap 3010126 3010149, overlap 3010135 ATTTCTATATCCTCT TATTAAGTGTATTTAG TTA TTAAATACACTTAATA TTTAATAACTTTTCA cobT 3011472 - 3010381 - | nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase cobK 3012242 - 3011469 - | precorrin-6x reductase cobJ 3012979 - 3012242 - | precorrin-3B C17-methyltransferase CLL_A2931 3014059 - 3012998 - | CbiG TERM 3952 3014020 - 3014044 + g 75 -8.5 -3.36046 | opp_overlap 3014020, overlap 3014018 TAAGAGTATAAGCAA TGTCCTTCCCC TTA GGTGATGGACA TATTATGCTTATCAT TERM 3953 3014044 - 3014020 - G 75 -8.5 -3.49851 | opp_overlap 3014018 3014020 TAAGAGTATAAGCAA TGTCCTTCCCC TTA GGTGATGGACA TATTATGCTTATCAT cobM 3014814 - 3014056 - | precorrin-4 C11-methyltransferase TERM 3954 3014653 - 3014674 + g 74 -6.7 -4.43351 | opp_overlap 3014637 3014634 3014653, overlap 3014651 ATCTAAAGTCATAGA TGCTGAATT ATAA AATTTAGCA TTCTTTTTACAGTAT cobI 3015513 - 3014848 - | precorrin-2 C20-methyltransferase CLL_A2934 3016093 - 3015515 - | putative cobalt-precorrin-6Y C(15)-methyltransferase cbiE 3016708 - 3016106 - | precorrin-6y C5,15-methyltransferase (decarboxylating), CbiE subunit cbiD 3017861 - 3016716 - | cobalamin biosynthesis protein CbiD TERM 3955 3017333 - 3017356 + g 74 -8.2 -3.52515 | AAGTCTTTTTACCTA TTTCTGTACC TTGT GGAACAGAAA TTATAACTTTTACAT cobH 3018632 - 3018009 - | precorrin-8X methylmutase cobB 3020036 - 3018720 - | cobyrinic Acid a,c-diamide synthase CLL_A2939 3021051 - 3020215 - | sirohydrochlorin cobaltochelatase TERM 3956 3021323 - 3021295 - H 87 -6.8 -5.42975 | opp_overlap 3021296, overlap 3021296 3021313 TTATACAAATAAAAA TGTCCCTACTAA ATACA TTAGTAAGGACT ATATCAATTATATAA TERM 3957 3021296 - 3021322 + H 71 -8.1 -2.97425 | opp_overlap 3021295 3021296 3021313 TATACAAATAAAAAT GTCCCTACTAA ATACA TTAGTAAGGAC TATATCAATTATATA TERM 3958 3021322 - 3021296 - H 95 -10.3 -3.84158 | opp_overlap 3021296, overlap 3021295 3021313 TATACAAATAAAAAT GTCCCTACTAA ATACA TTAGTAAGGAC TATATCAATTATATA CLL_A2940 3021784 - 3022347 + | hypothetical protein CLL_A2941 3023742 - 3022429 - | sodium:neurotransmitter symporter family protein TERM 3959 3023984 - 3023949 - R 83 -6.4 -5.24291 | opp_overlap 3023949 3023948 AAAAGTAAAAGAAAA GCGTTAATATTAGT TTTTATTT ATTAATATTAACGC CGTTTTTCTTTTATA CLL_A2942 3024175 - 3024011 - | hypothetical protein TERM 3960 3024219 - 3024194 - R 76 -9.3 -2.87463 | opp_overlap 3024194 3024199, overlap 3024199 AATCCCTCCTACATA CTAAATTTATA TTAA TATAAATTTAG TATGTCCAACATAAT TERM 3961 3024194 - 3024219 + r 76 -9.3 -2.8805 | opp_overlap 3024194 3024199, overlap 3024199 AATCCCTCCTACATA CTAAATTTATA TTAA TATAAATTTAG TATGTCCAACATAAT TERM 3962 3024479 - 3024509 + r 100 -8.5 -5.4593 | gap 1, opp_overlap 3024479 3024482 CACCATTGTAGTAAA CATCAGTG-TTTAG AGTT CTAAATCACTGGTG TTTTTCTTATTTTCC CLL_A2944 3025618 - 3024629 - | hydrolase, alpha/beta fold family protein CLL_A2945 3026247 - 3026735 + | flavodoxin TERM 3963 3026761 - 3026789 + T 100 -5.6 -6.44931 | gap 1, opp_overlap 3026761 TATAAGTGAAGTGAA CTGTATAA-AATT TATA AATTATTATACAG TTTTTTTTTATTATT CLL_A2946 3027117 - 3026980 - | hypothetical protein CLL_A2947 3027529 - 3028659 + | 1,3-propanediol dehydrogenase TERM 3964 3028742 - 3028781 + T 100 -7.6 -5.58179 | gap 1, opp_overlap 3028742 TATAATAACAAAAAA CTATATCA-TTTTATAACT AAC AATTATAAAAATGATATAG TTTTTTATTATACTA TERM 3965 3028781 - 3028742 - T 100 -9.8 -5.68489 | gap 1, opp_overlap 3028742 TATAATAACAAAAAA CTATATCA-TTTTATAACT AAC AATTATAAAAATGATATAG TTTTTTATTATACTA CLL_A2948 3030083 - 3028821 - | uracil permease CLL_A2949 3031223 - 3030441 - | putative phage lysozyme CLL_A2950 3032372 - 3031509 - | beta-lactamase domain protein CLL_A2951 3033222 - 3032389 - | methyl-accepting chemotaxis protein (MCP) signaling domain TERM 3966 3033573 - 3033537 - R 100 -14.1 -5.29782 | opp_overlap 3033537 TATACTCATAAAAAA TAGATCTAGATATTATT TAA ATTAATATCTAGATCTA TTTGCATAATCATTA TERM 3967 3033537 - 3033573 + r 100 -14.1 -3.70037 | opp_overlap 3033537 TATACTCATAAAAAA TAGATCTAGATATTATT TAA ATTAATATCTAGATCTA TTTGCATAATCATTA CLL_A2952 3035450 - 3033615 - | lipid A export ATP-binding/permease protein MsbA CLL_A2953 3037674 - 3035443 - | ABC transporter, ATP-binding/permease protein TERM 3968 3037855 - 3037889 + H 73 -7.4 -4.1347 | opp_overlap 3037851 3037855 3037865 3037867, overlap 3037856 3037865 ATGAAATTTAATCTA TGTCAATAATTATTTA CTA TAAATATTTATTGACC TTTATATAATTAACA TERM 3969 3037856 - 3037888 + H 87 -10.9 -3.076 | opp_overlap 3037855 3037851 3037865 3037867, overlap 3037855 3037865 TGAAATTTAATCTAT GTCAATAATTATTTA CTA TAAATATTTATTGAC CTTTATATAATTAAC CLL_A2954 3037962 - 3038417 + | transcriptional regulator, MarR family TERM 3970 3038429 - 3038469 + T 85 -11.5 -2.54639 | opp_overlap 3038429 3038434, overlap 3038434 ATAATATAGAACTTA CAAAAGACTTCAATATC CTCATTA GATATTGAAGTCTTTTA GATTTATTTAAAGAT TERM 3971 3038469 - 3038429 - T 100 -14.4 -2.66737 | opp_overlap 3038429 3038434, overlap 3038434 ATAATATAGAACTTA CAAAAGACTTCAATATCC TCATT AGATATTGAAGTCTTTTA GATTTATTTAAAGAT TERM 3972 3038464 - 3038434 - T 100 -12.1 -4.49939 | opp_overlap 3038434 3038429, overlap 3038429 ATAGAACTTACAAAA GACTTCAATATCC TCATT AGATATTGAAGTC TTTTAGATTTATTTA TERM 3973 3038434 - 3038464 + T 100 -11.4 -4.45261 | opp_overlap 3038429 3038434, overlap 3038429 ATAGAACTTACAAAA GACTTCAATATC CTCATTA GATATTGAAGTC TTTTAGATTTATTTA TERM 3974 3038582 - 3038524 - T 95 -10.3 -4.02719 | gap 3, opp_overlap 3038530 3038531, overlap 3038530 3038531 GGATTAAACAGCAAA TGATAAT-GGGACAGTAGATAATTTTGT GTAAAT ACAAAATTATCTACTGTCCCTATT-T-A TTTATATTTTGAGGC TERM 3975 3038530 - 3038578 + T 100 -19.4 -4.77047 | gap 1, opp_overlap 3038524 3038530 3038531, overlap 3038531 AACAGCAAATGATAA T-GGGACAGTAGATAATTTTGTG TAAA TACAAAATTATCTACTGTCCCTA TTTATTTATATTTTG TERM 3976 3038577 - 3038530 - T 100 -20.3 -3.64523 | opp_overlap 3038530 3038531, overlap 3038524 3038531 AACAGCAAATGATAA TGGGACAGTAGATAATTTTGT GTAAAT ACAAAATTATCTACTGTCCCT ATTTATTTATATTTT TERM 3977 3038576 - 3038531 - T 100 -23.8 -2.77629 | opp_overlap 3038530 3038531, overlap 3038530 3038524 ACAGCAAATGATAAT GGGACAGTAGATAATTTTGT GTAAAT ACAAAATTATCTACTGTCCC TATTTATTTATATTT TERM 3978 3038531 - 3038576 + T 100 -24.5 -3.95749 | opp_overlap 3038531 3038530 3038524, overlap 3038530 ACAGCAAATGATAAT GGGACAGTAGATAATTTTGTG TAAA TACAAAATTATCTACTGTCCC TATTTATTTATATTT araB 3040250 - 3038580 - | L-ribulokinase CLL_A2956 3042514 - 3040295 - | L-arabinose utilization protein TERM 3979 3041995 - 3042009 + g 74 -8.6 -3.18383 | opp_overlap 3041997 CTAAAACGTCTACAT CAGCTA TAA TAGCTG TTGGTACATGAGCAT TERM 3980 3042798 - 3042771 - H 78 -7.9 -4.28018 | opp_overlap 3042771 AACATGCTACTAAAA CATAGACCTTT GTATAA AAAGATCTATG TTTTAAAAATATTTT TERM 3981 3043111 - 3043137 + G 84 -9.6 -3.63515 | ATAGACCTGATGTTT CTTTTTCTTATG AAA CAAAAGAAAAAG TTCTTAACGCTGCAA CLL_A2957 3043011 - 3044123 + | putative transcriptional regulator TERM 3982 3044413 - 3044367 - f 100 -14.1 -5.11613 | opp_overlap 3044368, overlap 3044368 ATATTATTTAAAAAA GCAATGCTCACTATATTAAAA CATGT TTTTAATGTAGTGAGCATTGT TTTTTATCATCTTTT TERM 3983 3044412 - 3044368 - f 100 -17.6 -3.65883 | opp_overlap 3044368, overlap 3044367 TATTATTTAAAAAAG CAATGCTCACTATATTAAAA CATGT TTTTAATGTAGTGAGCATTG TTTTTTATCATCTTT TERM 3984 3044368 - 3044412 + F 100 -19.8 -5.38321 | opp_overlap 3044368 3044367 TATTATTTAAAAAAG CAATGCTCACTATATTAAAA CATGT TTTTAATGTAGTGAGCATTG TTTTTTATCATCTTT TERM 3985 3044644 - 3044664 + G 70 -6.9 -3.93744 | overlap 3044647 TTTTTGCTGGAATTT CAACAGTAT TAG GTGCTGTTG TTGTATTGTTTGTAA TERM 3986 3044704 - 3044689 - g 90 -3.3 -5.95539 | opp_overlap 3044689 TTGTAAAGAAAAAAA GTGAT AAAATA ATCAC CTTTGCTCTTGGTTT CLL_A2958 3044592 - 3045374 + | zinc transporter ZupT TERM 3987 3045528 - 3045502 - T 100 -11 -5.14477 | opp_overlap 3045502 CATACATGTAAAAAA GGAACTACTTTA ATT TTAAGTAGTTCC TTTTTAATATAATAC TERM 3988 3045502 - 3045528 + T 100 -11 -4.82667 | opp_overlap 3045502 CATACATGTAAAAAA GGAACTACTTTA ATT TTAAGTAGTTCC TTTTTAATATAATAC CLL_A2959 3046319 - 3045543 - | galactose-1-phosphate uridylyltransferase TERM 3989 3046535 - 3046563 + H 85 -9.9 -3.13046 | opp_overlap 3046518 3046534 3046533 3046538, overlap 3046535 3046538 3046550 TAATTGAAATTAACC CAATTATATTGTA TGT TATAATATAATTG TAATTATTCTTTTTA TERM 3990 3047656 - 3047637 - g 70 -5.1 -4.70107 | GATGAAAATAAGAAA TCTGATT CAAGTC AATCAGA AAATTTATCTACTGA CLL_A2960 3046623 - 3047714 + | YpuA CLL_A2961 3047824 - 3048297 + | hypothetical protein TERM 3991 3048302 - 3048342 + T 100 -11.3 -4.40298 | opp_overlap 3048306 3048315, overlap 3048306 TTTTAAGATAGTCAT TAAAGCAGAGAAATAGCTA CTT TTGCTAATTCTCTGCTTAA TTTCTTACTTTAGAT TERM 3992 3048306 - 3048338 + T 95 -12.1 -3.73435 | opp_overlap 3048306 3048315, overlap 3048302 AAGATAGTCATTAAA GCAGAGAAATAGCTA CTT TTGCTAATTCTCTGC TTAATTTCTTACTTT TERM 3993 3048338 - 3048306 - T 95 -12.1 -3.79138 | opp_overlap 3048302 3048306, overlap 3048315 AAGATAGTCATTAAA GCAGAGAAATAGCTA CTT TTGCTAATTCTCTGC TTAATTTCTTACTTT CLL_A2962 3049042 - 3048368 - | sulfite reductase, assimilatory-type CLL_A2963 3049422 - 3049075 - | ArsC family protein TERM 3994 3049594 - 3049570 - R 100 -7.9 -5.4505 | opp_overlap 3049570 TTTCGTAATAAAAAA TGTACTCTGTA TAT TTCAGAGCACA TTTTTTATAAAAATA TERM 3995 3049570 - 3049594 + r 78 -5.7 -5.252 | opp_overlap 3049570 TTTCGTAATAAAAAA TGTACTCTGTA TAT TTCAGAGCACA TTTTTTATAAAAATA CLL_A2964 3050162 - 3049617 - | hypothetical protein TERM 3996 3050212 - 3050202 - R 87 -6.8 -5.4505 | opp_overlap 3050202 TTGCTGAATAAAAAA GAGG GTT CCTC TTTAATATTAACAGC CLL_A2965 3051442 - 3050390 - | HD-GYP hydrolase domain containing protein TERM 3997 3051580 - 3051601 + r 100 -8.9 -5.72616 | opp_overlap 3051580 TAATAAAGTAAAAAA TCATTTTGA AAAC TCAAAATGA TTTTTTTATCTAACT TERM 3998 3051601 - 3051580 - R 100 -8.9 -5.46129 | opp_overlap 3051580 TAATAAAGTAAAAAA TCATTTTGA AAAC TCAAAATGA TTTTTTTATCTAACT CLL_A2966 3052508 - 3051618 - | hypothetical protein TERM 3999 3052656 - 3052618 - R 100 -13.5 -5.46706 | opp_overlap 3052621 ATCTTAAAATAAAAA TAACTGTCTAAAACAGA TTTAT TCCATTTTAGACAGTTA AAGATTTAATACTAT CLL_A2967 3052820 - 3052668 - | hypothetical protein TERM 4000 3052885 - 3052875 - H 73 -2.6 -5.78622 | GTATTGTAAAAAAAA TATA GAC TATA CATTTAATATTAAAT CLL_A2968 3053114 - 3053959 + | DegV family protein TERM 4001 3054057 - 3054071 + T 75 -5.8 -5.04733 | opp_overlap 3054057, overlap 3054047 3054052 AAGTTCATTTAAAAA TGTATT TCA AATACA TTTTATTTATAATTA TERM 4002 3054071 - 3054057 - T 71 -5.8 -4.67011 | opp_overlap 3054047 3054057 3054052 AAGTTCATTTAAAAA TGTATT TCA AATACA TTTTATTTATAATTA deoD 3054802 - 3054092 - | purine nucleoside phosphorylase TERM 4003 3054360 - 3054370 + g 75 -5.4 -4.93296 | ATAGGTCCAACCTTA GGTT CAA AACC TTTTTCTACTGCTAA TERM 4004 3054770 - 3054785 + g 78 -9 -3.28416 | TATGCTTTCTGCAAT TGCACC TTCT GGTGCA TTAATATGAATACTC cdd 3055256 - 3054849 - | cytidine deaminase TERM 4005 3055386 - 3055444 + r 91 -10.8 -3.76387 | opp_overlap 3055397 3055400, overlap 3055394 3055395 3055397 3055438 TTTAATAATATATTT TTTTGATTAGATAAGCTAATATATTATT TTT AATAATATATTAGCTTATCCTTTAAAAA TTAATTTCTATTTTT TERM 4006 3055394 - 3055436 + r 100 -16.8 -3.6288 | opp_overlap 3055397 3055400, overlap 3055386 3055395 3055397 TATATTTTTTTGATT AGATAAGCTAATATATTATT TTT AATAATATATTAGCTTATCC TTTAAAAATTAATTT TERM 4007 3055395 - 3055435 + r 100 -20.3 -2.77005 | opp_overlap 3055397 3055400, overlap 3055394 3055386 3055397 ATATTTTTTTGATTA GATAAGCTAATATATTATT TTT AATAATATATTAGCTTATC CTTTAAAAATTAATT TERM 4008 3055433 - 3055397 - R 100 -17.1 -2.78463 | opp_overlap 3055395 3055394 3055386 3055397, overlap 3055400 ATTTTTTTGATTAGA TAAGCTAATATATTATT TTT AATAATATATTAGCTTA TCCTTTAAAAATTAA TERM 4009 3055397 - 3055433 + r 100 -17.1 -2.92667 | opp_overlap 3055397 3055400, overlap 3055395 3055394 3055386 ATTTTTTTGATTAGA TAAGCTAATATATTATT TTT AATAATATATTAGCTTA TCCTTTAAAAATTAA TERM 4010 3055430 - 3055400 - R 100 -14.4 -3.54475 | opp_overlap 3055397 3055395 3055394 3055386, overlap 3055397 TTTTTGATTAGATAA GCTAATATATTATT TTT AATAATATATTAGC TTATCCTTTAAAAAT CLL_A2971 3056415 - 3055462 - | ABC transporter, permease protein CLL_A2972 3057571 - 3056417 - | ABC transporter, permease protein TERM 4011 3056609 - 3056591 - G 71 -7.6 -3.65542 | opp_overlap 3056590 3056593, overlap 3056589 TGTAGCTGCAAAATA TATAATAG TTG CTATTATA GTATCTGCAATTTCA CLL_A2973 3059091 - 3057568 - | galactose/methyl galactoside import ATP-binding protein MglA CLL_A2974 3060441 - 3059338 - | membrane lipoprotein tmpc CLL_A2975 3061634 - 3060615 - | transcriptional regulator TERM 4012 3062168 - 3062200 + r 100 -12.3 -4.7871 | opp_overlap 3062168 3062183 ATATTTAATAAAAAA TTGAAGCTATTTAAA TAC TTAAAATAGCTTCAA TTTTTAGTAGTACTT TERM 4013 3062200 - 3062168 - R 100 -12.3 -5.49234 | opp_overlap 3062168, overlap 3062183 ATATTTAATAAAAAA TTGAAGCTATTTAAA TAC TTAAAATAGCTTCAA TTTTTAGTAGTACTT CLL_A2976 3063391 - 3062222 - | aspartate aminotransferase TERM 4014 3062787 - 3062803 + g 76 -6.7 -4.45168 | opp_overlap 3062789 GCATATATCTCATCA GATATAA CAA TTATATC TTTGTCTTTTAAAAC TERM 4015 3063158 - 3063178 + g 71 -7.7 -3.52896 | opp_overlap 3063158 3063156 TCTTCTATATAAATA CTTAGATAT TTC ATGTCTAAG TTCTATAAATCCTGC CLL_A2977 3063867 - 3063388 - | transcriptional regulator, AsnC family TERM 4016 3063951 - 3063930 - R 74 -8.1 -3.33711 | opp_overlap 3063935, overlap 3063935 TATTTATAAACGGAA CAAAATCGC CTAG GCGATTTTA GAGTCTGCATTTGTT TERM 4017 3063946 - 3063935 - R 73 -5.8 -4.76213 | opp_overlap 3063935, overlap 3063930 ATAAACGGAACAAAA TCGC CTAG GCGA TTTTAGAGTCTGCAT TERM 4018 3064124 - 3064151 + r 82 -9.9 -3.05816 | opp_overlap 3064124 TAAAGAATAAAAAAA TCCTTCATCCC CAACAA GGGACGAAGGA TTAACTACGCGGTAC TERM 4019 3064151 - 3064124 - R 100 -12.8 -6.01369 | opp_overlap 3064124 TAAAGAATAAAAAAA TCCTTCATCCCC AACA AGGGACGAAGGA TTAACTACGCGGTAC TERM 4020 3064254 - 3064271 + r 71 -5.7 -4.70659 | opp_overlap 3064257 ACGTCATCATCTAAT TAAGAAT ATCA ATTCTTA TTTTTCAATGTGAAA pulA 3066561 - 3064603 - | pullulanase, type I TERM 4021 3066804 - 3066769 - R 73 -5.6 -4.82667 | gap 1, opp_overlap 3066762 TTAGTATATTAAAAA TGACCAAGG-CATATTT TTC ATATACGTCCTTGATCA TTTTTAGTATTAAAT CLL_A2979 3067035 - 3066922 - | hypothetical protein CLL_A2980 3068558 - 3067062 - | sodium/proline symporter TERM 4022 3067424 - 3067403 - G 70 -7.5 -3.44047 | opp_overlap 3067394 3067405, overlap 3067402 AATTATTAATAAAAT TATCTATTA TATC TAATAGATA TAATCCTGCTCCACT TERM 4023 3069032 - 3069046 + G 75 -7.2 -4.11275 | opp_overlap 3069032 3069034 GCAACATGTAGTGAA GATAGT ACA ACTATC TTTCATTTAAATTCT CLL_A2981 3068795 - 3069082 + | hypothetical protein CLL_A2982 3070693 - 3069278 - | arginine/lysine decarboxylase CLL_A2983 3072155 - 3070950 - | zinc protease TERM 4024 3072263 - 3072217 - R 100 -14.3 -3.62191 | opp_overlap 3072221, overlap 3072221 ATAATACTAAATTAA TAAAGTTTATAATGTTATAAT GATTT ATTATATCATTATAAACTTTA AATTAACTATTCATA TERM 4025 3072221 - 3072259 + r 95 -11.4 -3.78067 | opp_overlap 3072217 3072221 TACTAAATTAATAAA GTTTATAATGTTATAATG ATT TATTATATCATTATAAAC TTTAAATTAACTATT TERM 4026 3072259 - 3072221 - R 100 -10.7 -4.41302 | opp_overlap 3072221, overlap 3072217 TACTAAATTAATAAA GTTTATAATGTTATAAT GATTT ATTATATCATTATAAAC TTTAAATTAACTATT CLL_A2984 3074155 - 3072266 - | ABC transporter, ATP-binding protein TERM 4027 3074025 - 3074037 + g 70 -7.7 -3.33509 | opp_overlap 3074024 ATAATTTTGAAAATT GTGGT TTT ACCAC TTCCATTATTTCCAA TERM 4028 3074107 - 3074122 + g 83 -4.8 -5.73672 | TATTACTTAAAATTT TATTTC CACC GAAATA TTTTTTTACTTCTTT TERM 4029 3074263 - 3074218 - R 73 -7.2 -4.16016 | opp_overlap 3074217 3074219, overlap 3074221 TTATGTTTCAACAAA GTATTGATATATGCAATG TCTAATTGCT CATTGCATATATCAACAT ATCTTTAACATAGCT TERM 4030 3074219 - 3074262 + r 72 -8.5 -3.26031 | opp_overlap 3074218 3074221, overlap 3074217 TATGTTTCAACAAAG TATTGATATATGCAATG TCTAATTGCT CATTGCATATATCAACA TATCTTTAACATAGC TERM 4031 3074260 - 3074221 - R 87 -11.1 -3.10244 | opp_overlap 3074219 3074217, overlap 3074218 TGTTTCAACAAAGTA TTGATATATGCAATG TCTAATTGCT CATTGCATATATCAA CATATCTTTAACATA TERM 4032 3074317 - 3074293 - R 100 -10.1 -5.093 | opp_overlap 3074287 TTTAAAATAATAAAA CTCGGGTAA TTAGTTC TTACCCGAG TTAAAATCATTAAAT TERM 4033 3074434 - 3074471 + r 100 -13 -4.11692 | opp_overlap 3074435, overlap 3074435 AATACTTAAACAAAA ATTAAACCTAGGTAAG ATCGTC CTTACCTAGGTTTAAA TTTTACAAATCAATA TERM 4034 3074435 - 3074470 + r 100 -16.5 -3.06694 | opp_overlap 3074435, overlap 3074434 ATACTTAAACAAAAA TTAAACCTAGGTAAG ATCGTC CTTACCTAGGTTTAA ATTTTACAAATCAAT TERM 4035 3074470 - 3074435 - R 100 -17.2 -5.31519 | opp_overlap 3074435 3074434 ATACTTAAACAAAAA TTAAACCTAGGTAAGA TCGT CCTTACCTAGGTTTAA ATTTTACAAATCAAT CLL_A2985 3076390 - 3074711 - | hypothetical Methyl-accepting chemotaxis protein TERM 4036 3076448 - 3076458 + r 73 -2.6 -5.63374 | opp_overlap 3076448 TCTTTACATAATTCA TATA TTA TATA TTTTTTTGCTATTAA TERM 4037 3076524 - 3076483 - R 81 -10.5 -2.68802 | opp_overlap 3076483 3076486 3076514 3076517, overlap 3076482 3076475 3076486 3076516 3076519 TATTAAAGTTACAAT TTAGCCTTATTTTTATATT AAAT AATATAAAAATAAGGCTGC TATATAATAAGATAA TERM 4038 3076483 - 3076524 + r 93 -12.7 -2.94747 | opp_overlap 3076483 3076482 3076475 3076486 3076516 3076519, overlap 3076486 3076514 3076517 TATTAAAGTTACAAT TTAGCCTTATTTTTATATT AAAT AATATAAAAATAAGGCTGC TATATAATAAGATAA TERM 4039 3076486 - 3076521 + r 100 -16.6 -2.71268 | opp_overlap 3076483 3076482 3076475 3076486 3076516 3076519, overlap 3076483 3076514 3076517 TAAAGTTACAATTTA GCCTTATTTTTATATT AAAT AATATAAAAATAAGGC TGCTATATAATAAGA TERM 4040 3076521 - 3076486 - R 100 -16.6 -2.62316 | opp_overlap 3076486 3076483 3076514 3076517, overlap 3076483 3076482 3076475 3076516 3076519 TAAAGTTACAATTTA GCCTTATTTTTATATT AAAT AATATAAAAATAAGGC TGCTATATAATAAGA TERM 4041 3076557 - 3076516 - R 100 -12 -5.23765 | gap 1, opp_overlap 3076486 3076483 3076514 3076517, overlap 3076486 3076483 3076482 3076475 3076519 TAAATAATATAAAAA TAAGGCTGCTATATAATAA GATAA TTATTATATAGCAGCCC-A TTAAGTTTATTACTC TERM 4042 3076517 - 3076557 + r 93 -11.4 -3.38832 | opp_overlap 3076486 3076483 3076482 3076475 3076516 3076519, overlap 3076486 3076483 3076514 AAATAATATAAAAAT AAGGCTGCTATATAATAA GATAA TTATTATATAGCAGCCCA TTAAGTTTATTACTC TERM 4043 3076555 - 3076519 - R 100 -18.4 -4.65219 | opp_overlap 3076486 3076483 3076517 3076514, overlap 3076486 3076483 3076482 3076475 3076516 ATAATATAAAAATAA GGCTGCTATATAATAA GATAA TTATTATATAGCAGCC CATTAAGTTTATTAC CLL_A2986 3077922 - 3076567 - | heme biosynthesis TERM 4044 3078048 - 3078021 - R 75 -9.3 -2.53112 | opp_overlap 3078021, overlap 3078020 ATTGAACTTAGGAAT GCTAAAATGAG TATAGT CCCATTTTAGC TTGCTCCCAATATAA TERM 4045 3078271 - 3078241 - R 79 -4.9 -5.54907 | gap 1, opp_overlap 3078248, overlap 3078245 GCCATAAAATAAAAA GTA-AGCAGTAACT ATCT AGTTACTGCTATAA AAATTAGTTTTCGCA TERM 4046 3078266 - 3078245 - R 100 -11.7 -4.02606 | opp_overlap 3078248, overlap 3078241 TAAAATAAAAAGTAA GCAGTAACT ATCT AGTTACTGC TATAAAAATTAGTTT CLL_A2987 3078412 - 3078275 - | hypothetical protein TERM 4047 3078356 - 3078371 + g 74 -2.6 -5.61913 | overlap 3078358 ACATTCCTTGCATCC TGGTTT ACAT AAACTA TTTTTTATATTTGTT TERM 4048 3078735 - 3078761 + r 100 -14 -4.7871 | opp_overlap 3078735 CTTATACATAAAAAA GGTACTTAAAAA AAT TTTTTAAGTACC TTTTTAATAATAATT TERM 4049 3078761 - 3078735 - R 100 -14 -5.4251 | opp_overlap 3078735 CTTATACATAAAAAA GGTACTTAAAAA AAT TTTTTAAGTACC TTTTTAATAATAATT CLL_A2988 3080765 - 3078834 - | chaperone protein HtpG CLL_A2989 3081536 - 3080976 - | maltose O-acetyltransferase CLL_A2990 3085137 - 3081604 - | exonuclease SbcC TERM 4050 3082442 - 3082459 + g 78 -4.3 -5.40873 | TCAAAATTTTCACTT TTTAAAT TTTT ATTTAAA TTTTCTTTTTCTATT CLL_A2991 3086344 - 3085124 - | DNA repair exonuclease CLL_A2992 3086917 - 3086360 - | acetyltransferase, gnat family TERM 4051 3086790 - 3086800 + g 71 -4 -5.05601 | ACATATAATTCCTTA TCAT TTA ATGA TTTTTCTATATACTC TERM 4052 3086972 - 3086953 - H 73 -2.1 -5.76237 | opp_overlap 3086953 3086962 TATATAAAGAAAAAA CGCAC TAAATATGCT GTGCG TACTTTTATATTAAT TERM 4053 3087148 - 3087115 - H 85 -6.2 -5.59534 | opp_overlap 3087115, overlap 3087147 AAGTATAATAAAAAA TAGTGTGTTGATTT AATAAA AAACCAATACACTA TTTTTTAAATATTAA TERM 4054 3087115 - 3087148 + H 80 -6.2 -5.1615 | opp_overlap 3087115 3087147 AAGTATAATAAAAAA TAGTGTGTTGATTT AATAAA AAACCAATACACTA TTTTTTAAATATTAA TERM 4055 3087211 - 3087221 + H 70 -4 -5.11112 | opp_overlap 3087211 ATTCTTATTATTGAA CTTT TTT AAAG TTTTTATTCAGATTT CLL_A2993 3087388 - 3088434 + | integral membrane protein TERM 4056 3088456 - 3088466 + T 73 -2.6 -5.72254 | TTTCTTACATAATTT TAAT ATG ATTA TTTTTTATTCTTTAG surE 3089464 - 3088709 - | 5'/3'-nucleotidase SurE CLL_A2995 3091705 - 3089600 - | cell surface protein TERM 4057 3092149 - 3092121 - R 100 -8.3 -5.34555 | opp_overlap 3092121 TTATATTATAAAAAA TACTACTGAAATT TAT ATTTCCAGTAGTA TTTTTATACTCATTT TERM 4058 3092121 - 3092149 + r 83 -7 -4.95806 | gap 1, opp_overlap 3092121 TTATATTATAAAAAA TACTACT-GAAAT TTAT ATTTCCAGTAGTA TTTTTATACTCATTT CLL_A2996 3093884 - 3092205 - | methyl-accepting chemotaxis sensory transducer TERM 4059 3093887 - 3093899 + H 73 -3.4 -5.56673 | CCTTAATATTCATAG TACC CCCCT GGTA TTTTTTATTCTAAAT TERM 4060 3094086 - 3094052 - H 95 -5.3 -6.02345 | GAATCATAAAAAAAA CTACATAAAATAATT ATTCA AATCACTTTATATAG TTAAATTATTTATAC TERM 4061 3094287 - 3094271 - H 71 -6.7 -4.18702 | opp_overlap 3094271 ATAATCTTGAACAAA CTAAAAT TAA ATTTTAG TATTGAAAGGACTAT TERM 4062 3094646 - 3094634 - g 71 -7.7 -3.6217 | opp_overlap 3094634 AGGGAGCATATAGAA CTTGC AGG GCAAG TTACTGATGCTGCTA CLL_A2997 3094310 - 3094948 + | hypothetical protein CLL_A2998 3095963 - 3095118 - | phosphatase YidA CLL_A2999 3096032 - 3096796 + | transcriptional regulator, DeoR family TERM 4063 3096913 - 3096869 - T 76 -6.2 -4.89852 | gap 2, opp_overlap 3096872 TTATATCTATAAAAA TAAGAGAG-TAAATT-AGCA TATATAT TGCTCAATTTATCTCTCTTA CTAATAAATAACTTA CLL_A3000 3097965 - 3096988 - | diaminopimelate dehydrogenase TERM 4064 3098248 - 3098223 - H 81 -7.1 -4.80656 | opp_overlap 3098223 3098233 3098234, overlap 3098239 AGCAATAAGATAAAA CTAATATTTAT TAAA ATAAACATTAG TTTATTTTAGTTTGT TERM 4065 3098223 - 3098248 + H 70 -4.9 -4.84353 | opp_overlap 3098223 3098239, overlap 3098233 3098234 AGCAATAAGATAAAA CTAATATTTAT TAAA ATAAACATTAG TTTATTTTAGTTTGT TERM 4066 3098233 - 3098258 + H 77 -7.1 -4.46669 | opp_overlap 3098223 3098239, overlap 3098223 3098234 TAAAACTAATATTTA TTAAAATAAAC ATTA GTTTATTTTAG TTTGTTGATTTTCAT TERM 4067 3098234 - 3098257 + H 72 -8.4 -3.26375 | opp_overlap 3098223 3098239, overlap 3098223 3098233 AAAACTAATATTTAT TAAAATAAAC ATTA GTTTATTTTA GTTTGTTGATTTTCA TERM 4068 3099460 - 3099425 - g 71 -8.6 -2.8507 | overlap 3099422 3099429 TTATCTAAGGAATTA TTAATTGAAAAAAAGA AATG TCTTTTCCCCAATTAA AACTATGCTATCACT CLL_A3001 3098369 - 3099460 + | sugar kinase, ribokinase family TERM 4069 3099488 - 3099522 + T 95 -8.1 -5.14563 | gap 1, opp_overlap 3099488 ACTTTTCATAAAAAA CCTAATATTG-GTGAT ATAT ATCACACAACATTAGG TTTTTTACTAAAAGA TERM 4070 3099522 - 3099488 - T 100 -10.3 -5.24531 | gap 1, opp_overlap 3099488 ACTTTTCATAAAAAA CCTAATATTG-GTGAT ATAT ATCACACAACATTAGG TTTTTTACTAAAAGA CLL_A3002 3100765 - 3099614 - | alcohol dehydrogenase TERM 4071 3100653 - 3100669 + g 77 -2.9 -5.69068 | overlap 3100654 TTTACTAAAAAGCTG TCAATGG CTA CCATAGG TTTTTTATATTTTTC trpF 3101547 - 3100855 - | N-(5'phosphoribosyl)anthranilate isomerase CLL_A3004 3102496 - 3101552 - | kinase, pfkB family TERM 4072 3102852 - 3102882 + r 85 -9.9 -3.29381 | opp_overlap 3102857, overlap 3102857 ATAATACATATAAAT AAAAATGAGCATC TTTTT GATGCTCATTTTA TTAATCATATTCTAC TERM 4073 3102857 - 3102877 + r 100 -9.8 -4.74215 | opp_overlap 3102857, overlap 3102852 ACATATAAATAAAAA TGAGCATC TTTTT GATGCTCA TTTTATTAATCATAT TERM 4074 3102877 - 3102857 - R 100 -9.8 -5.4433 | opp_overlap 3102857 3102852 ACATATAAATAAAAA TGAGCATC TTTTT GATGCTCA TTTTATTAATCATAT CLL_A3005 3103843 - 3102920 - | hypothetical protein CLL_A3006 3104464 - 3103880 - | RNA polymerase ECF-type sigma factor TERM 4075 3104670 - 3104648 - R 72 -6.3 -4.49756 | opp_overlap 3104648, overlap 3104642 3104643 TCTTAAATAGCAAAA GGAGTACCT TTTTC AGCTACTCC TTTCATCGTCTATAT CLL_A3007 3105405 - 3104770 - | phosphatase CLL_A3008 3106438 - 3105455 - | putative transcriptional regulator TERM 4076 3106456 - 3106478 + r 80 -9.4 -3.1789 | overlap 3106454 3106452 TTCACACCTCCTGCA CTTATTAAAA CTC TTTTAATAAG TCTATTGTAACAATT TERM 4077 3106600 - 3106565 - R 90 -7 -5.30448 | opp_overlap 3106564 3106567, overlap 3106567 AAATAAATATAAAAA TAGCCTTAACCAAGTA ATTA TAATTGATTAAGGCTG GTTCTACTATGTCTA TERM 4078 3106598 - 3106567 - R 89 -9.6 -4.23487 | opp_overlap 3106564 3106567, overlap 3106565 ATAAATATAAAAATA GCCTTAACCAAGTA ATTA TAATTGATTAAGGC TGGTTCTACTATGTC CLL_A3009 3107741 - 3106749 - | hypothetical protein CLL_A3010 3109198 - 3107759 - | putative poly(beta-D-mannuronate) O-acetylase TERM 4079 3109349 - 3109365 + r 74 -8.1 -3.33865 | overlap 3109343 CTTTCTTTTTTGAAG CTCTTAT AAT ATAAGAG TATTAATTTAACCTA TERM 4080 3109547 - 3109514 - R 83 -7 -4.94058 | gap 1, opp_overlap 3109514, overlap 3109503 TTAATTTAAATAAAA TTTAAAGGCTCACTC TATAT AAGT-AGCCTTTAAA TTATTCTAAATATTA CLL_A3011 3110279 - 3109560 - | hypothetical protein CLL_A3012 3112419 - 3110272 - | hypothetical protein CLL_A3013 3113354 - 3112491 - | ABC transporter, ATP-binding protein CLL_A3014 3114371 - 3113559 - | hypothetical protein CLL_A3015 3116058 - 3114601 - | sensory transduction histidine kinase CLL_A3016 3116720 - 3116064 - | response regulator TERM 4081 3116925 - 3116905 - R 93 -9.7 -4.71401 | opp_overlap 3116905, overlap 3116897 AAGAAAAGCATAAAA CCGCACC TATTTAT GGTGCGG TTCAATAATAAGTAT TERM 4082 3116905 - 3116925 + r 78 -9.7 -3.10343 | opp_overlap 3116905 3116897 AAGAAAAGCATAAAA CCGCACC TATTTAT GGTGCGG TTCAATAATAAGTAT CLL_A3017 3118310 - 3116979 - | extracellular ribonuclease TERM 4083 3119612 - 3119598 - g 75 -8.6 -3.36749 | TAGGTGGAATATTAA CAGTAG TAG CTACTG CACCGCTTAGTTCTA CLL_A3018 3119051 - 3120079 + | regulatory protein TERM 4084 3120129 - 3120179 + T 100 -10.9 -4.91109 | gap 1, opp_overlap 3120136, overlap 3120132 3120136 3120178 TTCGTATACATAAAT GAAGA-AACTGCCATATTAACA AACAAAAA TGTTAATATGGCAGTTCTCTTA TTTTTATACTAAAAA TERM 4085 3120132 - 3120176 + T 100 -12.6 -4.56153 | gap 1, opp_overlap 3120136, overlap 3120129 3120136 GTATACATAAATGAA GA-AACTGCCATATTAACA AACAAAAA TGTTAATATGGCAGTTCTC TTATTTTTATACTAA TERM 4086 3120171 - 3120136 - T 100 -13.6 -4.4388 | opp_overlap 3120132 3120129 3120136 ACATAAATGAAGAAA CTGCCATATTAACA AACAAAAA TGTTAATATGGCAG TTCTCTTATTTTTAT TERM 4087 3120136 - 3120171 + T 100 -13.6 -4.0281 | opp_overlap 3120136, overlap 3120132 3120129 ACATAAATGAAGAAA CTGCCATATTAACA AACAAAAA TGTTAATATGGCAG TTCTCTTATTTTTAT TERM 4088 3120431 - 3120398 - T 79 -8.5 -4.08279 | opp_overlap 3120402 ATATTTTATAAATAA TCTCTTATAATAT AATTTAAA ATATTATAAGAGA TATCAATGCAAAAAA TERM 4089 3120478 - 3120448 - T 79 -4.9 -5.54192 | opp_overlap 3120449 3120455, overlap 3120449 3120452 ATCAATGCAAAAAAA TTAACTAGTAAAA TTTAC TTTTACTAGCTAT ACTTTTAATCTCCAA TERM 4090 3120477 - 3120449 - T 78 -8.4 -3.90888 | opp_overlap 3120449 3120455, overlap 3120448 3120452 TCAATGCAAAAAAAT TAACTAGTAAAA TTTAC TTTTACTAGCTA TACTTTTAATCTCCA TERM 4091 3120474 - 3120452 - T 77 -7.9 -4.04789 | opp_overlap 3120449 3120455, overlap 3120449 3120448 ATGCAAAAAAATTAA CTAGTAAAA TTTAC TTTTACTAG CTATACTTTTAATCT CLL_A3019 3121172 - 3120483 - | radical SAM domain protein CLL_A3020 3121734 - 3121159 - | integral membrane protein TERM 4092 3121551 - 3121523 - G 71 -7.5 -3.55603 | opp_overlap 3121528, overlap 3121522 3121527 3121528 GGCATGAAATAAAAT GAAATTGGATCAA AAG TTGATCCATTTAC TATTGAAGTTAATCC TERM 4093 3121547 - 3121527 - G 74 -6.9 -4.37871 | opp_overlap 3121528, overlap 3121523 3121522 3121528 TGAAATAAAATGAAA TTGGATCAA AAG TTGATCCAT TTACTATTGAAGTTA TERM 4094 3121546 - 3121528 - G 86 -10.4 -3.21096 | opp_overlap 3121528, overlap 3121527 3121523 3121522 GAAATAAAATGAAAT TGGATCAA AAG TTGATCCA TTTACTATTGAAGTT TERM 4095 3121528 - 3121546 + g 91 -10.4 -3.9344 | opp_overlap 3121528 3121527 3121523 3121522 GAAATAAAATGAAAT TGGATCAA AAG TTGATCCA TTTACTATTGAAGTT CLL_A3021 3122738 - 3121758 - | nucleoside hydrolase, IUNH family TERM 4096 3121871 - 3121883 + g 72 -6.3 -4.38141 | opp_overlap 3121871 CTACTTCTGTTAATA CCAAA CAA TTTGG TTCTTTTCTATAAAA TERM 4097 3123053 - 3123027 - R 90 -6.7 -5.72254 | gap 1 CTAAAGAATAAAAAA CGCCTTGAGCAT ATCC AT-CTCAAAGCG TAAGAAATTAAAGTC TERM 4098 3123140 - 3123121 - R 100 -5.7 -6.23317 | opp_overlap 3123121 ATAAAAATAAAAAAA GTCGCAC TTAACC ATGCGAC TCATTAAATCTTATT TERM 4099 3123198 - 3123219 + r 76 -3 -5.83226 | overlap 3123199 GGTCTTCGAACCTCT CCCACTTT TTGAAT AAAGTGGA TTTTTTTATTAAATT TERM 4100 3123199 - 3123218 + r 71 -6.5 -4.07495 | overlap 3123198 GTCTTCGAACCTCTC CCACTTT TTGAAT AAAGTGG ATTTTTTTATTAAAT CLL_A3022 3124161 - 3123280 - | transporter TERM 4101 3124436 - 3124378 - R 100 -13.2 -3.22884 | gap 2, opp_overlap 3124367 3124381 3124396, overlap 3124380 3124383 3124396 TTATTAATGTATTAA CATTATTTAAAATAAAAACTGCTGATAA CAATT TTATCAGCAGTTTTTATTTTAA-TA-CG TATGATTTAATTATA TERM 4102 3124435 - 3124380 - R 100 -14.7 -3.17586 | gap 1, opp_overlap 3124367 3124381 3124396, overlap 3124378 3124383 3124396 ATTAATGTATTAACA TTATTTAAAATAAAAACTGCTGATAA CAATT TTATCAGCAGTTTTTATTTTAA-TAC GTATGATTTAATTAT TERM 4103 3124381 - 3124436 + r 90 -12.5 -3.0747 | gap 1, opp_overlap 3124380 3124378 3124383 3124396, overlap 3124367 3124396 TTAATGTATTAACAT TAT-TTAAAATAAAAACTGCTGATAA CAATT TTATCAGCAGTTTTTATTTTAATACG TATGATTTAATTATA TERM 4104 3124433 - 3124383 - R 100 -18.9 -2.78266 | opp_overlap 3124381 3124396, overlap 3124380 3124378 3124396 AATGTATTAACATTA TTTAAAATAAAAACTGCTGATAA CAATT TTATCAGCAGTTTTTATTTTAAT ACGTATGATTTAATT TERM 4105 3124396 - 3124420 + r 100 -11.6 -5.50723 | opp_overlap 3124396 3124383 3124380 3124378, overlap 3124381 TATTTAAAATAAAAA CTGCTGATAA CAATT TTATCAGCAG TTTTTATTTTAATAC TERM 4106 3124420 - 3124396 - R 100 -11.6 -5.48213 | opp_overlap 3124381 3124396, overlap 3124383 3124380 3124378 TATTTAAAATAAAAA CTGCTGATAA CAATT TTATCAGCAG TTTTTATTTTAATAC CLL_A3023 3125015 - 3124869 - | hypothetical protein TERM 4107 3125679 - 3125663 - g 78 -5.9 -4.87389 | GATGGTAAAAAGAAA TTAGCTA CAT CAGCTAA AAAAGAAAATTTAGA CLL_A3024 3125243 - 3125785 + | rubredoxin/rubrerythrin CLL_A3025 3125929 - 3126246 + | hypothetical protein TERM 4108 3126300 - 3126269 - f 100 -13.4 -5.72053 | opp_overlap 3126269 TAATTAAATAAAAAA CTTTTAAATTCATT TTTC AATGAATTTAAAAG TTTTTGCTTTTATTC TERM 4109 3126269 - 3126300 + F 100 -13.4 -5.17786 | opp_overlap 3126269 TAATTAAATAAAAAA CTTTTAAATTCATT TTTC AATGAATTTAAAAG TTTTTGCTTTTATTC TERM 4110 3126458 - 3126438 - f 77 -7 -4.51812 | opp_overlap 3126437 3126455 TTTTATAATAATAAA TGTATGAA TTTCT TTCATACA CATCTTGTATTTGCA TERM 4111 3127013 - 3127037 + G 71 -8.1 -3.30124 | overlap 3127012 TATACTTGGGTGCTT CATAAAAATTA TGA TAATTTTTGTG TTATCGCAAATACGC CLL_A3026 3126548 - 3127174 + | hypothetical protein TERM 4112 3127342 - 3127307 - T 100 -13.6 -5.1244 | opp_overlap 3127307 TGATTAACATAAAAA TAAGCTCTAAGCATAA AAAA TTATACTCAGAGCTTA TTTTTATTTAATTAA TERM 4113 3127307 - 3127342 + T 100 -9.2 -5.38326 | opp_overlap 3127307 TGATTAACATAAAAA TAAGCTCTAAGCATAA AAAA TTATACTCAGAGCTTA TTTTTATTTAATTAA CLL_A3027 3127567 - 3127394 - | hypothetical protein TERM 4114 3127629 - 3127592 - R 75 -8.8 -3.2241 | opp_overlap 3127593, overlap 3127591 3127593 3127595 CACCCCTTATAAAAT TTATTAGTAGATAATT TCAAAT AATTATCTACTAATAT TTAATATACTATTTT TERM 4115 3127628 - 3127593 - R 86 -12.3 -2.53125 | opp_overlap 3127593, overlap 3127592 3127591 3127595 ACCCCTTATAAAATT TATTAGTAGATAATT TCAAAT AATTATCTACTAATA TTTAATATACTATTT TERM 4116 3127593 - 3127628 + r 100 -12.3 -3.89334 | opp_overlap 3127593 3127592 3127591 3127595 ACCCCTTATAAAATT TATTAGTAGATAATT TCAAAT AATTATCTACTAATA TTTAATATACTATTT TERM 4117 3127626 - 3127595 - R 82 -10.5 -2.80077 | opp_overlap 3127593, overlap 3127593 3127592 3127591 CCCTTATAAAATTTA TTAGTAGATAATT TCAAAT AATTATCTACTAA TATTTAATATACTAT feoB 3129788 - 3127638 - | ferrous iron transport protein B TERM 4118 3128025 - 3128037 + g 82 -6.3 -5.13722 | opp_overlap 3128025 AAACAGTATACCAAA TGTTG CTA CAACA TTTTCTTTTGCTACA CLL_A3029 3130082 - 3129861 - | hypothetical protein CLL_A3030 3130305 - 3130096 - | hypothetical protein TERM 4119 3130712 - 3130682 - R 100 -9.8 -4.81249 | opp_overlap 3130682 TCTTAAATTTAAAAA GGGATATTGGCTCT GGT ATAGCTAATATCCC TTTTTAATTCATCAG TERM 4120 3130682 - 3130712 + r 100 -12 -4.90266 | opp_overlap 3130682 TCTTAAATTTAAAAA GGGATATTGGCTCT GGT ATAGCTAATATCCC TTTTTAATTCATCAG CLL_A3031 3132065 - 3130731 - | NADH oxidase TERM 4121 3132438 - 3132472 + r 100 -9 -5.1287 | opp_overlap 3132438 TTTTCAATTTAAAAA GATATAAAATTAAT AAAATCG ATTAATTTTATATC TTTTTTCAATGTAAA TERM 4122 3132472 - 3132438 - R 93 -9 -4.74103 | opp_overlap 3132438 TTTTCAATTTAAAAA GATATAAAATTAAT AAAATCG ATTAATTTTATATC TTTTTTCAATGTAAA CLL_A3032 3133258 - 3132629 - | probable hydrolase TERM 4123 3132938 - 3132952 + g 73 -4.4 -5.09895 | opp_overlap 3132940 3132951 TACACAATTGCTAAC TATAAA TAA TTTATA TTTTTTAAATAACTC CLL_A3033 3133587 - 3134900 + | radical SAM CLL_A3034 3134903 - 3135643 + | hypothetical protein TERM 4124 3135670 - 3135627 - T 100 -14.2 -3.60214 | opp_overlap 3135631, overlap 3135629 ATTGGAAGCACATAA TAGAGGCTAATGACTAAAAT CTAT ATTCTAGTCATTAACCTCTC TGGGACATTAGATAA TERM 4125 3135668 - 3135629 - T 100 -16.8 -3.376 | opp_overlap 3135631, overlap 3135627 TGGAAGCACATAATA GAGGCTAATGACTAAAAT CTAT ATTCTAGTCATTAACCTC TCTGGGACATTAGAT TERM 4126 3135631 - 3135666 + T 76 -9.2 -2.88579 | opp_overlap 3135629 3135627 GAAGCACATAATAGA GGCTAATGACTAAAAT CTAT ATTCTAGTCATTAACC TCTCTGGGACATTAG CLL_A3035 3137800 - 3135785 - | endopeptidase O TERM 4127 3137847 - 3137879 + H 100 -12.3 -5.65927 | opp_overlap 3137847 TAATTATATAAAAAA CATCTGCTTAATAAT AGC ATTATTAAACAGATG TTTTTTATTTAAGTA TERM 4128 3137879 - 3137847 - H 100 -14.5 -5.42131 | opp_overlap 3137847 TAATTATATAAAAAA CATCTGCTTAATAAT AGC ATTATTAAACAGATG TTTTTTATTTAAGTA TERM 4129 3138142 - 3138172 + H 73 -4.2 -5.19916 | opp_overlap 3138145 3138171, overlap 3138137 3138145 3138171 TTTAGTATTATAATA AAATTATTCTGATA TTT TATCACAATAATTA TTTTTTAAATATTTT TERM 4130 3138169 - 3138145 - H 76 -5.9 -4.81814 | opp_overlap 3138137 3138142 3138145 AGTATTATAATAAAA TTATTCTGATA TTT TATCACAATAA TTATTTTTTAAATAT TERM 4131 3138145 - 3138169 + H 74 -5.9 -4.65666 | opp_overlap 3138145, overlap 3138137 3138142 AGTATTATAATAAAA TTATTCTGATA TTT TATCACAATAA TTATTTTTTAAATAT CLL_A3036 3138285 - 3138452 + | hypothetical protein CLL_A3037 3138469 - 3138720 + | protein cotJB CLL_A3038 3138736 - 3139299 + | protein cotJC TERM 4132 3139363 - 3139342 - T 72 -7.5 -3.53031 | TCTATTTTAAATTAA TGTTTATAT TACA ATATAAACA CACTTTTAAAATAAT TERM 4133 3139449 - 3139424 - T 100 -7.7 -5.47399 | opp_overlap 3139424 TGAAGTTTAAAAAAA TCTCTACAG TTTTATTT CTGTAGAGA TTTTTAAGTTATCTA TERM 4134 3139424 - 3139449 + T 86 -7.7 -4.79756 | opp_overlap 3139424 TGAAGTTTAAAAAAA TCTCTACAG TTTTATTT CTGTAGAGA TTTTTAAGTTATCTA asrC 3140428 - 3139466 - | sulfite reductase, subunit C asrB 3141235 - 3140441 - | sulfite reductase, subunit B asrA 3142238 - 3141228 - | sulfite reductase, subunit A CLL_A3042 3143019 - 3142252 - | formate/nitrite family of transporter TERM 4135 3142931 - 3142955 + g 75 -5.9 -4.77157 | opp_overlap 3142931 3142944, overlap 3142945 CCTGCAAGCATTGAA CTAATAAAATA ACC TAATTTATTAG TTTTTAGTAAATTAA TERM 4136 3143081 - 3143139 + r 79 -4.9 -5.47914 | gap 1, opp_overlap 3143093 3143098 3143132, overlap 3143081 3143098 3143132 ATTAATCTAAGTATA -TATTTTAAATAATTAAAGCACCGTGAT ATTA ATCACGGTGCTTTAAAAAATTCAGATAG TTTTTTCTGATTTTT TERM 4137 3143081 - 3143138 + r 100 -10.9 -3.85088 | opp_overlap 3143093 3143098 3143132, overlap 3143081 3143098 3143132 ATTAATCTAAGTATA TATTTTAAATAATTAAAGCACCGTGAT ATTA ATCACGGTGCTTTAAAAAATTCAGATA GTTTTTTCTGATTTT TERM 4138 3143126 - 3143093 - R 100 -19.9 -3.9578 | opp_overlap 3143081 3143081 3143098, overlap 3143098 ATATATTTTAAATAA TTAAAGCACCGTGAT ATTA ATCACGGTGCTTTAA AAAATTCAGATAGTT TERM 4139 3143098 - 3143121 + r 100 -15.4 -3.57561 | opp_overlap 3143093 3143098, overlap 3143081 3143081 TTTTAAATAATTAAA GCACCGTGAT ATTA ATCACGGTGC TTTAAAAAATTCAGA TERM 4140 3143121 - 3143098 - R 100 -15.4 -4.14764 | opp_overlap 3143098 3143081 3143081, overlap 3143093 TTTTAAATAATTAAA GCACCGTGAT ATTA ATCACGGTGC TTTAAAAAATTCAGA CLL_A3043 3143805 - 3143113 - | transcriptional regulator, Crp/Fnr family CLL_A3044 3144821 - 3143868 - | periplasmic molybdate-binding protein/domain modA 3145086 - 3145907 + | molybdate ABC transporter, periplasmic molybdate-binding protein TERM 4141 3146094 - 3146109 + G 80 -7.6 -4.57543 | ACCATTAATTCTTCC TCCAAC TGTT GTTGGA TTCTTTTTACTTCTT modB 3145930 - 3146613 + | molybdate ABC transporter, permease protein CLL_A3047 3146615 - 3147664 + | ATP-binding protein of ABC transporter TERM 4142 3147842 - 3147817 - T 85 -8.4 -4.70659 | opp_overlap 3147812 3147817 CTGTACATTGAAAAA GAGGATTCAC ATTTTA ATGAATCCTC TTTTATAGATTAAGC TERM 4143 3147817 - 3147842 + T 81 -7.7 -4.4715 | opp_overlap 3147817, overlap 3147812 CTGTACATTGAAAAA GAGGATTCA CATTTTAA TGAATCCTC TTTTATAGATTAAGC gltA 3149348 - 3147957 - | glutamate synthase (NADPH), homotetrameric CLL_A3049 3150235 - 3149348 - | conserved electron-transfer protein TERM 4144 3150454 - 3150507 + r 72 -7.9 -3.52475 | opp_overlap 3150461 AACATACGCTAAAAA TAAAAAACTAATTTAATGAAAATTT AAAT AGACTTCCACTAAATTAGTTTTTTA TTATACTATATTCAA TERM 4145 3150500 - 3150461 - R 90 -6 -5.93252 | opp_overlap 3150454 GCTAAAAATAAAAAA CTAATTTAATGAAAATTT AAAT AGACTTCCACTAAATTAG TTTTTTATTATACTA smpB 3151006 - 3150536 - | SsrA-binding protein rnr 3153422 - 3151182 - | ribonuclease R TERM 4146 3153177 - 3153162 - G 77 -6.2 -4.7254 | opp_overlap 3153162, overlap 3153164 ATCTGGTATTAAAAA TCCAAA TCCC TTTGGA TGTGCTTGAAGTCTT CLL_A3052 3155673 - 3153646 - | V-type H(+)-translocating pyrophosphatase TERM 4147 3156146 - 3156105 - R 100 -19.2 -5.03145 | opp_overlap 3156105 3156110 3156142, overlap 3156110 TAATTTGCTAAAAAA TAAAAGTAAGGACTACTT CTCATT AAGTAGTCCTTACTTTTA TTTCATAAAGTTTAA TERM 4148 3156105 - 3156146 + r 100 -19.2 -3.7795 | opp_overlap 3156105 3156110, overlap 3156110 3156142 TAATTTGCTAAAAAA TAAAAGTAAGGACTACTT CTCATT AAGTAGTCCTTACTTTTA TTTCATAAAGTTTAA TERM 4149 3156141 - 3156110 - R 100 -14.7 -5.42198 | opp_overlap 3156105 3156110, overlap 3156105 TGCTAAAAAATAAAA GTAAGGACTACTT CTCATT AAGTAGTCCTTAC TTTTATTTCATAAAG TERM 4150 3156110 - 3156141 + r 100 -14.7 -4.93877 | opp_overlap 3156110 3156105, overlap 3156105 TGCTAAAAAATAAAA GTAAGGACTACTT CTCATT AAGTAGTCCTTAC TTTTATTTCATAAAG secG 3156377 - 3156144 - | preprotein translocase, SecG subunit CLL_A3054 3156559 - 3156425 - | hypothetical protein TERM 4151 3156635 - 3156585 - R 100 -14.4 -3.87641 | opp_overlap 3156588 3156601, overlap 3156588 3156601 AACATCTTCTAGAAA TTATAAAACTAAAAAACAGCTACA AAT TGCAGCCGTTTTTTAGTTTTGTTA GATGCTATATATCTT TERM 4152 3156588 - 3156632 + r 100 -13.9 -3.12874 | opp_overlap 3156588 3156585 3156601, overlap 3156601 ATCTTCTAGAAATTA TAAAACTAAAAAACAGCTACA AAT TGCAGCCGTTTTTTAGTTTTG TTAGATGCTATATAT TERM 4153 3156632 - 3156588 - R 100 -16.1 -3.01125 | opp_overlap 3156588 3156601, overlap 3156585 3156601 ATCTTCTAGAAATTA TAAAACTAAAAAACAGCTACA AAT TGCAGCCGTTTTTTAGTTTTG TTAGATGCTATATAT TERM 4154 3156601 - 3156619 + r 70 -3 -5.52347 | opp_overlap 3156588 3156585 3156601, overlap 3156588 TATAAAACTAAAAAA CAGCTACA AAT TGCAGCCG TTTTTTAGTTTTGTT TERM 4155 3156619 - 3156601 - R 91 -7.4 -5.50313 | opp_overlap 3156601 3156588, overlap 3156588 3156585 TATAAAACTAAAAAA CAGCTACA AAT TGCAGCCG TTTTTTAGTTTTGTT eno 3157962 - 3156667 - | phosphopyruvate hydratase TERM 4156 3157995 - 3158011 + H 73 -6.7 -4.19648 | opp_overlap 3157991 3157994, overlap 3157991 ATTATATGAAATTAT TTGATAA TAT TTATCAA TTTCATTTATATATA CLL_A3056 3158259 - 3159656 + | transporter TERM 4157 3159729 - 3159684 - T 73 -3.4 -5.45802 | opp_overlap 3159686 3159687, overlap 3159685 3159687 GTTTTAAAATAAAAA TTACCGTTAACCTAAATGAT TACATC ATCAGTTAGATTAACGGCTT TAATTTTTTATTTTT TERM 4158 3159686 - 3159727 + T 72 -6 -4.53334 | opp_overlap 3159685 3159684 3159687, overlap 3159687 TTTAAAATAAAAATT ACCGTTAACCTAAATGAT TACATC ATCAGTTAGATTAACGGC TTTAATTTTTTATTT TERM 4159 3159726 - 3159687 - T 95 -11.7 -3.50051 | opp_overlap 3159686 3159687, overlap 3159685 3159684 TTAAAATAAAAATTA CCGTTAACCTAAATGAT TACATC ATCAGTTAGATTAACGG CTTTAATTTTTTATT TERM 4160 3159687 - 3159726 + T 80 -9.5 -3.2834 | opp_overlap 3159687 3159685 3159684, overlap 3159686 TTAAAATAAAAATTA CCGTTAACCTAAATGAT TACATC ATCAGTTAGATTAACGG CTTTAATTTTTTATT CLL_A3057 3160321 - 3159737 - | hypothetical protein TERM 4161 3160564 - 3160536 - R 79 -4.7 -5.61596 | ATTTCCATAAAAAAA GAGTCTAGTAA TTTATTT TTACTAAACCC TTTTAAAAATCATTT gpmI 3162119 - 3160581 - | 2,3-bisphosphoglycerate-independent phosphoglycerate mutase TERM 4162 3162200 - 3162210 + r 70 -2.6 -5.51402 | TATTTTTAACCATTT TAAT TAT ATTA TTTTTTTAGATGTAT murQ 3163219 - 3162314 - | N-acetylmuramic acid 6-phosphate etherase TERM 4163 3163093 - 3163104 + g 86 -4.4 -5.80817 | GAATAACCTTTTCAA TTGC GTAC GCAA TTTTTTTATCTTCAG CLL_A3060 3163525 - 3164946 + | phosphotransferase system domain protein TERM 4164 3165972 - 3165960 - g 74 -4.9 -5.05153 | opp_overlap 3165960 ACTGTAAAAAACAAA GATAT TGA ATATC TAAATTATATAACAG CLL_A3061 3164967 - 3166013 + | outer surface protein TERM 4165 3166021 - 3166079 + T 93 -7.5 -5.10461 | gap 3, opp_overlap 3166036, overlap 3166021 3166023 3166036 TTATTTAGATTTATT T-AGA-TTT-ATTAAAAAGGATGTATCA AAATAA TGATACATCCTTTTTAATTAAACTCTAA TTTTTATTACATAAA TERM 4166 3166021 - 3166078 + T 100 -13.5 -3.65554 | gap 2, opp_overlap 3166036, overlap 3166021 3166023 3166036 TTATTTAGATTTATT TAGA-TTT-ATTAAAAAGGATGTATCA AAATAA TGATACATCCTTTTTAATTAAACTCTA ATTTTTATTACATAA TERM 4167 3166023 - 3166074 + T 100 -14.9 -3.25358 | opp_overlap 3166036, overlap 3166021 3166021 3166036 ATTTAGATTTATTTA GATTTATTAAAAAGGATGTATCA AAATAA TGATACATCCTTTTTAATTAAAC TCTAATTTTTATTAC TERM 4168 3166036 - 3166061 + T 100 -10.6 -4.87291 | opp_overlap 3166036, overlap 3166023 3166021 3166021 TAGATTTATTAAAAA GGATGTATCA AAATAA TGATACATCC TTTTTAATTAAACTC TERM 4169 3166061 - 3166036 - T 100 -10.6 -4.76041 | opp_overlap 3166023 3166021 3166021 3166036 TAGATTTATTAAAAA GGATGTATCA AAATAA TGATACATCC TTTTTAATTAAACTC TERM 4170 3166147 - 3166101 - T 71 -5.6 -4.65153 | gap 1, opp_overlap 3166101, overlap 3166096 TTACATAAATCAAAA GAGTTAAATCTAAAAATAAAT CCTAAC ATTCA-TTTTAGCTTTAACTC TTTTCCAATTATATT CLL_A3062 3166777 - 3166226 - | putative viral A-type inclusion protein repeat TERM 4171 3166329 - 3166354 + g 72 -5.6 -4.50257 | opp_overlap 3166329 TTATCTTTTGTATAA GTATGTACTT CATTGT AAGTATATAC TTTATTATGTTCTCT CLL_A3063 3167072 - 3168133 + | methyl-accepting chemotaxis protein TERM 4172 3168204 - 3168234 + T 100 -12.8 -4.50218 | opp_overlap 3168209, overlap 3168209 AATTTCTTAAAAACA AAAAAGGCTATGAT TAA ATCATAGCCTTTTA TTATTTTTAGTAGTT TERM 4173 3168209 - 3168229 + T 100 -12.7 -5.16681 | opp_overlap 3168209, overlap 3168204 CTTAAAAACAAAAAA GGCTATGAT TAA ATCATAGCC TTTTATTATTTTTAG TERM 4174 3168229 - 3168209 - T 100 -12.7 -5.93252 | opp_overlap 3168209 3168204 CTTAAAAACAAAAAA GGCTATGAT TAA ATCATAGCC TTTTATTATTTTTAG tpiA 3168987 - 3168241 - | triose-phosphate isomerase TERM 4175 3168968 - 3168978 + g 70 -5.4 -4.53607 | ATTTTCCAGTTTCCC GCAA TAA TTGC TTTTCTCATCGTTTT TERM 4176 3169062 - 3169090 + r 73 -7.5 -3.82531 | opp_overlap 3169063 3169070, overlap 3169063 TAATTCTACATAGTA AGGTAAAACTCCT TTA AGAAGTTTTACCC TTTACTAACTTATTT TERM 4177 3169089 - 3169063 - R 100 -13.2 -3.32765 | opp_overlap 3169062 3169063, overlap 3169070 AATTCTACATAGTAA GGTAAAACTCCT TTA AGAAGTTTTACC CTTTACTAACTTATT TERM 4178 3169063 - 3169089 + r 85 -11 -2.88434 | opp_overlap 3169063 3169070, overlap 3169062 AATTCTACATAGTAA GGTAAAACTCCT TTA AGAAGTTTTACC CTTTACTAACTTATT pgk 3170300 - 3169110 - | phosphoglycerate kinase TERM 4179 3170378 - 3170344 - R 79 -8.7 -3.68378 | overlap 3170342 CTATATTTTAAAATA GTCTGGCCTTATAGC CTTAT ACTACAAAACCAGAC TTATTTATGATTTTA gap 3171433 - 3170417 - | glyceraldehyde-3-phosphate dehydrogenase, type I CLL_A3067 3172537 - 3171506 - | sugar-binding domain protein TERM 4180 3172764 - 3172719 - R 76 -8.1 -3.67305 | gap 1, overlap 3172715 CATATAAATAATTAA TTAATATTTAGAA-GTTAAATT TAA ACTTTAACACTCTAAATATTAA CCATTTAATTTATTA rpoN 3174159 - 3172777 - | RNA polymerase sigma-54 factor TERM 4181 3173156 - 3173172 + g 74 -8.1 -3.56099 | TCAAAAAATTCACTT TGCTTAT TTA ATAAGCA TTTCAACACATTATA TERM 4182 3174376 - 3174324 - R 100 -18.4 -3.5456 | opp_overlap 3174324, overlap 3174329 AATGCTAATAACTAA TAAAACCATGATTTAAACAAAA TTTATAATT TTTTGTTTAAATCATGGTTTTA TTTTTATTTTACTTA TERM 4183 3174324 - 3174376 + r 100 -18.4 -5.54338 | opp_overlap 3174324 3174329 AATGCTAATAACTAA TAAAACCATGATTTAAACAAAA TTTATAATT TTTTGTTTAAATCATGGTTTTA TTTTTATTTTACTTA TERM 4184 3174371 - 3174329 - R 100 -13.9 -4.84262 | opp_overlap 3174324, overlap 3174324 TAATAACTAATAAAA CCATGATTTAAACAAAA TTTATAATT TTTTGTTTAAATCATGG TTTTATTTTTATTTT CLL_A3069 3175230 - 3174385 - | DegV family protein CLL_A3070 3175700 - 3175239 - | hypothetical tRNA/rRNA methyltransferase TERM 4185 3175632 - 3175609 - G 73 -7.6 -3.73968 | gap 1, opp_overlap 3175624, overlap 3175613 AAAGGCTTTATTAAA TGTAGCTTACT ATC AGTAAGC-ACA CAAGTTCTTGCTATA TERM 4186 3175629 - 3175613 - G 75 -9.5 -2.67803 | opp_overlap 3175624, overlap 3175609 GCTTTATTAAATGTA GCTTACT ATC AGTAAGC ACACAAGTTCTTGCT TERM 4187 3176062 - 3176036 - R 100 -8.2 -6.04419 | opp_overlap 3176036 AAAAGAATAAAAAAA CAAAAGGTAT ATTAATA ATACCTTTTG TTTTTTTAATTATTG TERM 4188 3176036 - 3176062 + r 100 -8.2 -5.71638 | opp_overlap 3176036 AAAAGAATAAAAAAA CAAAAGGTAT ATTAATA ATACCTTTTG TTTTTTTAATTATTG CLL_A3071 3177589 - 3176072 - | vancomycin B-type resistance protein VanW TERM 4189 3177175 - 3177193 + g 74 -4.7 -5.1101 | GCTTTTCTTGTCCTT TATTCTT TATAT AAGAATA TTTTTTCAATGCTGA TERM 4190 3177620 - 3177640 + r 73 -7 -4.03995 | opp_overlap 3177613 3177620, overlap 3177613 3177618 AATAAATATACTGAA TTAGTAGT TTAAT ACTACTAA TATTTTTATAAAAAA TERM 4191 3177701 - 3177719 + r 70 -7.6 -3.31766 | opp_overlap 3177700, overlap 3177698 ATTATATCACATTAT TTCTTATA TTT TATAAGAA TATTATCGTATAATT TERM 4192 3177781 - 3177745 - R 75 -5.4 -5.00642 | overlap 3177749 TAATTTACATAAAAA TAAAGGTATCTTAT TCACATTTT ATAAGACACCTTCA CTTTATAGTTTAAGC CLL_A3072 3178759 - 3177797 - | glycosyl hydrolase, family 25 TERM 4193 3178727 - 3178745 + g 73 -4.6 -5.10767 | TTCATTAATATCTAT TCCAAAAA GAC TTTTAGGA TTTTTATCTTGCATA TERM 4194 3178848 - 3178828 - R 70 -4.9 -4.76123 | AAAGTACCAATAAAA TATAATTAT ATA ATAACTATA AATCTTCTATCTTTA CLL_A3073 3180367 - 3178844 - | two-component sensor kinase CLL_A3074 3181067 - 3180357 - | regulatory protein VanR TERM 4195 3181318 - 3181276 - R 90 -5.9 -5.86061 | gap 1, opp_overlap 3181278 3181280, overlap 3181256 3181280 TTTTAGTAAAAAAAA CAA-ATAGAGATAAGCATTT ATAC AGACGCTTATCTCTATGTTA TATGATTATTATTTT TERM 4196 3181278 - 3181315 + r 72 -7.9 -3.65434 | opp_overlap 3181276 3181280, overlap 3181280 TTAGTAAAAAAAACA AATAGAGATAAGCATTT ATAC AGACGCTTATCTCTATG TTATATGATTATTAT TERM 4197 3181280 - 3181313 + r 90 -10.5 -3.39274 | opp_overlap 3181276 3181280, overlap 3181278 AGTAAAAAAAACAAA TAGAGATAAGCATTT ATAC AGACGCTTATCTCTA TGTTATATGATTATT TERM 4198 3181313 - 3181280 - R 100 -10.5 -5.36018 | opp_overlap 3181280 3181278, overlap 3181276 AGTAAAAAAAACAAA TAGAGATAAGCATTT ATAC AGACGCTTATCTCTA TGTTATATGATTATT ddlB 3182286 - 3181381 - | D-alanine--D-alanine ligase TERM 4199 3182589 - 3182553 - R 84 -9 -4.32046 | opp_overlap 3182556 TTTGCAAAAATTAAA GAACCACTAATAAT AACCTTTAA ATTACTAGTGGTTC TAACTATCTTTTTAT nth 3183227 - 3182601 - | endonuclease III TERM 4200 3183095 - 3183121 + g 79 -8.9 -3.37796 | opp_overlap 3183092 TAATCTCATTAACCT TTTTATCAGTG GTCTG CGCTGATAAAA TTGTAGCTACTAACA TERM 4201 3183189 - 3183205 + g 70 -6.7 -3.91421 | overlap 3183186 ATCCGGGTAAGTTTC TTTTAGA ATA TCTAAAA TCTTTTGTGTCCTTA CLL_A3077 3183950 - 3183246 - | sn-glycerol-3-phosphate acyltransferase CLL_A3078 3185001 - 3183997 - | iron-sulfur cluster-binding protein TERM 4202 3184780 - 3184810 + g 74 -8.4 -3.2818 | opp_overlap 3184781, overlap 3184778 3184781 3184788 CTCAGACGTTAAATA AGGGAAAGCTATAG AAA TTATAGTTTTCCCC TCTTCTAAATATTGA TERM 4203 3184781 - 3184809 + g 93 -11.9 -2.56426 | opp_overlap 3184781, overlap 3184780 3184778 3184788 TCAGACGTTAAATAA GGGAAAGCTATAG AAA TTATAGTTTTCCC CTCTTCTAAATATTG TERM 4204 3184809 - 3184781 - G 84 -9 -3.95378 | opp_overlap 3184781 3184780 3184778 3184788 TCAGACGTTAAATAA GGGAAAGCTATA GAAAT TATAGTTTTCCC CTCTTCTAAATATTG cysE 3185594 - 3185010 - | serine O-acetyltransferase cysK 3186619 - 3185708 - | cysteine synthase A TERM 4205 3186411 - 3186430 + g 70 -2.1 -5.52384 | overlap 3186408 GTATTTCCACTTGTT GGTTCAA CTATGA TTGATCC TTTTTTTAATAAACC TERM 4206 3186816 - 3186790 - R 73 -6.8 -4.2349 | opp_overlap 3186785 TCCTCAGATTTAAAA TTTTTATACTTT CCT AAAGAATAAAAA AACTCCATCTCTATA TERM 4207 3186847 - 3186819 - R 100 -11.9 -6.01369 | opp_overlap 3186819 TAAAGAATAAAAAAA CTCCATCTCTATA AAA TATAGAGACGAAG TTATATCCGCGGTTC TERM 4208 3186819 - 3186847 + r 72 -7.5 -3.494 | opp_overlap 3186819 TAAAGAATAAAAAAA CTCCATCTCTATA AAA TATAGAGACGAAG TTATATCCGCGGTTC CLL_A3081 3188424 - 3187174 - | CBS domain/MgtE intracellular domain protein TERM 4209 3189397 - 3189384 - g 77 -5.3 -5.09173 | GAAGATTTTAAAAAA TTAGG ACGT CCTAA ATATGGATTCTTAGT TERM 4210 3190648 - 3190613 - g 76 -4.2 -5.4659 | opp_overlap 3190614, overlap 3190614 TAATATAAACAAAAA GTTAAATAAGAAACAA TTCC TTGTACCTTATTTAAT GTCTTCTCATCCGGG TERM 4211 3190647 - 3190614 - g 73 -7.7 -3.85514 | opp_overlap 3190614, overlap 3190613 AATATAAACAAAAAG TTAAATAAGAAACAA TTCC TTGTACCTTATTTAA TGTCTTCTCATCCGG TERM 4212 3191169 - 3191159 - g 74 -4 -5.28315 | AGAAAACGGAAAAAA TTCT TTA AGAA AAAAATCTAAAAGTA TERM 4213 3191192 - 3191175 - g 77 -2.1 -5.7946 | opp_overlap 3191186, overlap 3191177 3191186 TCTTTAAGAAAAAAA TCTAAAA GTAA TTTTAAA CCTAAAACTTCTACT CLL_A3082 3189171 - 3191219 + | radical SAM domain protein protein TERM 4214 3191212 - 3191200 - T 70 -6.3 -4.35926 | ATTTTAAACCTAAAA CTTCT ACT AGAAG AAAATAATTTTAATT TERM 4215 3191405 - 3191381 - T 100 -11.5 -5.66338 | opp_overlap 3191381 AAATATAATAAAAAA GCTCAAGAGCT TTT ATCTCTTGAGC TTTTATCTAAATATA TERM 4216 3191381 - 3191405 + T 100 -11.5 -4.56358 | opp_overlap 3191381 AAATATAATAAAAAA GCTCAAGAGCT TTT ATCTCTTGAGC TTTTATCTAAATATA CLL_A3083 3192097 - 3191642 - | septicolysin CLL_A3084 3192892 - 3192236 - | hypothetical protein TERM 4217 3192605 - 3192574 - G 70 -6.2 -4.15841 | gap 1, opp_overlap 3192577 3192581 3192583 3192591, overlap 3192577 3192581 TTATTAAACCATAAA CAACTGATATTATTG CAG CAATAATAT-AGTTA GTGCTAAATTTTAAG TERM 4218 3192770 - 3192795 + g 74 -2.1 -5.62288 | gap 1, opp_overlap 3192770 3192773, overlap 3192771 3192773 ATGTCTTAATAAAAA TA-ATGTAATTA CAA TAGTTACATATA TTTTTATTTTCTTAG CLL_A3085 3193858 - 3192980 - | hypothetical protein pssA 3194078 - 3194599 + | CDP-diacylglycerol--serine O-phosphatidyltransferase TERM 4219 3194604 - 3194651 + T 100 -9.7 -5.48054 | gap 2, opp_overlap 3194603 3194606, overlap 3194607 AAAAACTTTAAAATT TATGGGAATATTAAAAACTATCT ATTA AG-TGGTTTTTAATATTCCC-TA TTTTTTACTTTTACT TERM 4220 3194607 - 3194649 + T 100 -13.9 -4.35313 | gap 1, opp_overlap 3194606 3194603, overlap 3194604 AACTTTAAAATTTAT GGGAATATTAAAAACTATCT ATTA AG-TGGTTTTTAATATTCCC TATTTTTTACTTTTA CLL_A3087 3195021 - 3194665 - | hypothetical protein TERM 4221 3194976 - 3194954 - G 73 -7.9 -3.79841 | opp_overlap 3194953 TAAGAATCAACATAA GTTTTAAGT AATTG ACTTAAAAC AGTTATATCTTGGCT TERM 4222 3195152 - 3195130 - R 72 -3.6 -5.31275 | CTCTATCATAAAAAA TTTAATTACA TCC TTTAATTAAA AGTGGAGAGATGTCA CLL_A3088 3195721 - 3195317 - | hypothetical protein CLL_A3089 3196281 - 3195736 - | rubrerythrin TERM 4223 3196472 - 3196439 - R 83 -6.9 -5.23644 | opp_overlap 3196444, overlap 3196444 AATTAAACATAAAAA TAAAAGGATACAAGA AAAA TCTCATATCCTTTTT GGGAAATAATTTAAC TERM 4224 3196467 - 3196444 - R 87 -6.8 -5.40873 | opp_overlap 3196444, overlap 3196439 AACATAAAAATAAAA GGATACAAGA AAAA TCTCATATCC TTTTTGGGAAATAAT CLL_A3090 3197853 - 3196483 - | stage V sporulation protein R yhbH 3199033 - 3197858 - | sporulation protein YhbH CLL_A3092 3200964 - 3199042 - | serine protein kinase TERM 4225 3200231 - 3200211 - G 83 -9.9 -3.21416 | TACCTCTATTACCAA CATTAAATG CTC CATTTAATG AGAATATTCTTGGAT TERM 4226 3201096 - 3201054 - R 100 -13.1 -5.12068 | opp_overlap 3201057, overlap 3201057 TATACTTAATAAAAA TAAGTGAAGTTTAAACTAA TTAAC TTAGCTTAAACTTCACTTT CCTTTAAATACATCG TERM 4227 3201057 - 3201093 + r 100 -12.6 -4.08485 | opp_overlap 3201057 3201054 ACTTAATAAAAATAA GTGAAGTTTAAACTAA TTAAC TTAGCTTAAACTTCAC TTTCCTTTAAATACA TERM 4228 3201093 - 3201057 - R 100 -14.8 -4.64495 | opp_overlap 3201057, overlap 3201054 ACTTAATAAAAATAA GTGAAGTTTAAACTAA TTAAC TTAGCTTAAACTTCAC TTTCCTTTAAATACA recQ 3202886 - 3201123 - | ATP-dependent DNA helicase RecQ TERM 4229 3201694 - 3201714 + g 86 -9.1 -4.30161 | opp_overlap 3201690 3201694 3201695 3201697, overlap 3201695 TCATCATTCAAGCAA TTACTGCAA TTA TTGCAGTAG TTTAATTTTCTATCA TERM 4230 3201695 - 3201713 + g 86 -10.4 -3.17012 | opp_overlap 3201690 3201695 3201694 3201697, overlap 3201694 CATCATTCAAGCAAT TACTGCAA TTA TTGCAGTA GTTTAATTTTCTATC TERM 4231 3201713 - 3201695 - G 81 -10.4 -2.62668 | opp_overlap 3201694 3201695, overlap 3201690 3201694 3201697 CATCATTCAAGCAAT TACTGCAA TTA TTGCAGTA GTTTAATTTTCTATC TERM 4232 3201711 - 3201697 - G 71 -8.6 -2.8507 | opp_overlap 3201695 3201694, overlap 3201690 3201695 3201694 TCATTCAAGCAATTA CTGCAA TTA TTGCAG TAGTTTAATTTTCTA CLL_A3094 3203430 - 3202912 - | hypothetical protein CLL_A3095 3203835 - 3203434 - | hypothetical protein TERM 4233 3203959 - 3203926 - R 80 -6.3 -5.19879 | opp_overlap 3203907 3203926 TTTTAAATATAAAAA GTACTATTTAGAT GTAATTGT ATCTAAATAATAC TTTAATTATGTTCCT CLL_A3096 3206084 - 3204108 - | ABC-type antimicrobial peptide transport system, permease component TERM 4234 3206016 - 3206034 + g 86 -6.1 -5.33026 | opp_overlap 3206014 3206016 TGATGCTATAATATA TGGAAAA TATGT TTTTCCA TTTTTCTTTAAATTA CLL_A3097 3206844 - 3206077 - | bacitracin export ATP-binding protein BceA CLL_A3098 3207982 - 3206966 - | integral membrane sensor signal transduction histidine kinase CLL_A3099 3208659 - 3207985 - | two component transcriptional regulator, winged helix family TERM 4235 3208873 - 3208830 - R 100 -10 -5.186 | gap 1, opp_overlap 3208832 3208835 TAAAATACATAAAAA TAAGAACTAGTAACATTAAAC ATA ATTTAA-GTTACTAGCTCCTA TATAAATTATCTATT CLL_A3100 3209240 - 3208884 - | hypothetical protein TERM 4236 3209357 - 3209378 + H 70 -3.9 -5.16237 | CTCTTATCTTTTATA TATTTTAGT GTCT ATTAAAATA TTTTTTAATCCAATT CLL_A3101 3209497 - 3209856 + | hypothetical protein TERM 4237 3209936 - 3209977 + T 87 -6.1 -5.72207 | opp_overlap 3209936 TTATTCCTCAAAAAA GACTATTACCATTTTAT AATTAACA ATAAATAGGTAATAGTC TTTTTTTAATTTAAC TERM 4238 3209977 - 3209936 - T 78 -6.1 -5.02074 | opp_overlap 3209936 TTATTCCTCAAAAAA GACTATTACCATTTTAT AATTAACA ATAAATAGGTAATAGTC TTTTTTTAATTTAAC CLL_A3102 3210588 - 3209998 - | rubrerythrin TERM 4239 3210698 - 3210687 - R 70 -4.4 -4.94243 | opp_overlap 3210687, overlap 3210682 TCAAAAAAATTAAAA TGAG CAAT CTCA ATTAATGATTAAAAA CLL_A3103 3211745 - 3210792 - | conserved protein YqhO TERM 4240 3211968 - 3211944 - R 100 -10.1 -5.48063 | opp_overlap 3211962 3211967 ATTTAATAGAAAAAA CCGCATAGAAC TTT ATTCTATACGG CAATAGTTTGTCTTA thiE 3212642 - 3212001 - | thiamine-phosphate pyrophosphorylase thiM 3213658 - 3212822 - | hydroxyethylthiazole kinase thiD 3214637 - 3213852 - | phosphomethylpyrimidine kinase thiW 3215215 - 3214688 - | ThiW protein TERM 4241 3215278 - 3215261 - R 100 -9.9 -6.11243 | opp_overlap 3215261 ATTTAACAAAAAAAA TGTAGCC CAAG GGCTACA TAATATAAACTATTT TERM 4242 3215261 - 3215278 + r 79 -9.9 -2.64987 | opp_overlap 3215261 ATTTAACAAAAAAAA TGTAGCC CAAG GGCTACA TAATATAAACTATTT sdaAA 3216362 - 3215484 - | L-serine dehydratase, iron-sulfur-dependent, alpha subunit TERM 4243 3215676 - 3215688 + g 95 -9.1 -4.86385 | ACACAATGCTGTTAT TGCGC CTT GCGCA TTTCTTTTTGCACAT sdaAB 3217044 - 3216364 - | L-serine dehydratase, iron-sulfur-dependent, beta subunit TERM 4244 3217316 - 3217290 - R 100 -12.6 -5.45652 | opp_overlap 3217290, overlap 3217303 3217313 AGGGGTAAGAAAAAA GATATGTTTTAA ATT TTAAAACATATC TTTTAAAAATAAGGC TERM 4245 3217290 - 3217316 + r 100 -12.6 -4.11216 | opp_overlap 3217290 3217303 3217313 AGGGGTAAGAAAAAA GATATGTTTTAA ATT TTAAAACATATC TTTTAAAAATAAGGC CLL_A3110 3219141 - 3217495 - | uridine kinase TERM 4246 3218761 - 3218777 + g 74 -2.3 -5.72053 | overlap 3218762 TATAGGTACATCTTT TGAAATA ATT TCTTTCA TTTTTTCTTTAATTA CLL_A3111 3219277 - 3219975 + | hypothetical protein CLL_A3112 3219975 - 3220355 + | hypothetical protein fba 3220549 - 3221481 + | fructose-1,6-bisphosphate aldolase, class II TERM 4247 3221494 - 3221515 + F 100 -10.2 -6.01369 | opp_overlap 3221494 TAATATTTTTTAAAA GACGAGGT GTAAGA ACCTCGTC TTTTTTTATTCTTTA TERM 4248 3221515 - 3221494 - f 93 -10.2 -4.11371 | opp_overlap 3221494 TAATATTTTTTAAAA GACGAGGT GTAAGA ACCTCGTC TTTTTTTATTCTTTA TERM 4249 3221755 - 3221780 + F 76 -6.3 -4.89339 | opp_overlap 3221745 3221753 3221755, overlap 3221778 ATCATCATAATAATA TGCATAAACAT TTTT ATATTTATGCA TTTTTATAAATGCTT TERM 4250 3221780 - 3221755 - f 75 -8.5 -3.5121 | opp_overlap 3221755 3221778, overlap 3221745 3221753 ATCATCATAATAATA TGCATAAACAT TTTT ATATTTATGCA TTTTTATAAATGCTT argG 3222136 - 3223359 + | argininosuccinate synthase argH 3223362 - 3224759 + | argininosuccinate lyase TERM 4251 3224838 - 3224854 + G 90 -8.7 -4.72007 | opp_overlap 3224838 3224837 3224833 3224839, overlap 3224839 TTCACAAATAGAAAT TGGAGCT ATA AGCTCCG TTTCTTTTGATGGAC TERM 4252 3224853 - 3224839 - g 78 -10 -2.53244 | opp_overlap 3224838 3224839, overlap 3224838 3224837 3224833 TCACAAATAGAAATT GGAGCT ATA AGCTCC GTTTCTTTTGATGGA TERM 4253 3224839 - 3224853 + G 85 -10 -3.42481 | opp_overlap 3224839 3224838 3224837 3224833, overlap 3224838 TCACAAATAGAAATT GGAGCT ATA AGCTCC GTTTCTTTTGATGGA argC 3224752 - 3225786 + | N-acetyl-gamma-glutamyl-phosphate reductase argJ 3226083 - 3227306 + | arginine biosynthesis bifunctional protein ArgJ TERM 4254 3227889 - 3227875 - g 77 -6.4 -4.66953 | opp_overlap 3227875 CTAATATCTTAAAAA CAGCAT TAA ACGCTG GTTATATCCCCGTTG argB 3227409 - 3228263 + | acetylglutamate kinase CLL_A3119 3228455 - 3229636 + | acetylornithine aminotransferase argF 3229729 - 3230649 + | ornithine carbamoyltransferase TERM 4255 3230676 - 3230703 + F 100 -7.9 -5.76237 | opp_overlap 3230676 3230675 ATTTTTAATAAAAAG GATAGTTAGCT ATTTTA AGTTAACTATC TTTTTTATTTATCTA CLL_A3121 3230943 - 3232658 + | diguanylate cyclase (ggdef) domain protein TERM 4256 3232701 - 3232745 + T 100 -8.2 -5.56112 | opp_overlap 3232690 3232701 3232709 ATTATACTTTAAAAA GTAGAAAATGGATAATTAAA TAAAT TTTAATTACCTACTTTCTAC TTTTTTAATTTTTAT TERM 4257 3232745 - 3232701 - T 100 -10.4 -4.65168 | opp_overlap 3232701, overlap 3232690 3232709 ATTATACTTTAAAAA GTAGAAAATGGATAATTAAA TAAAT TTTAATTACCTACTTTCTAC TTTTTTAATTTTTAT CLL_A3122 3233895 - 3232855 - | hypothetical protein TERM 4258 3233490 - 3233509 + g 80 -8 -4.08974 | opp_overlap 3233489 3233493, overlap 3233493 TTTCATCTATAAACT GAATTTCA TGTG TGAAATTC TTTATGTAATCCAAT CLL_A3123 3234058 - 3234618 + | adenylate cyclase TERM 4259 3234658 - 3234698 + T 100 -11.3 -4.64423 | opp_overlap 3234663, overlap 3234652 3234663 ATATAAATTTTTTAA TAAAAGTCCAAGTTAGTGA CAT TCACCAACTTGGACTTATC TTTATCTTTTTATTA TERM 4260 3234663 - 3234693 + T 100 -15.6 -4.00788 | opp_overlap 3234663, overlap 3234658 3234652 AATTTTTTAATAAAA GTCCAAGTTAGTGA CAT TCACCAACTTGGAC TTATCTTTATCTTTT TERM 4261 3234693 - 3234663 - T 100 -17.8 -4.64334 | opp_overlap 3234663 3234658 3234652 AATTTTTTAATAAAA GTCCAAGTTAGTGA CAT TCACCAACTTGGAC TTATCTTTATCTTTT manA 3235677 - 3234700 - | mannose-6-phosphate isomerase, class I CLL_A3125 3235803 - 3236270 + | hypothetical protein TERM 4262 3236460 - 3236439 - T 100 -10.3 -5.24989 | opp_overlap 3236438 3236437 TTATATATTAAAAAA TGTGAATTC CGAA GAATTCACA CGTTCATTATATAGC pfkB 3237491 - 3236565 - | 1-phosphofructokinase CLL_A3127 3238611 - 3237754 - | class II aldolase, tagatose bisphosphate family CLL_A3128 3239087 - 3238656 - | PTS system fructose IIA component CLL_A3129 3240361 - 3239198 - | AgaS CLL_A3130 3241139 - 3240414 - | transcriptional regulator, GntR family TERM 4263 3240811 - 3240842 + g 84 -6.8 -5.03747 | opp_overlap 3240828, overlap 3240812 TTACTATCAGGTTCT GCAATTTCGAAATT TAAC AATTTTGAAATTGG TTTTTTCCCAAGTTT TERM 4264 3240812 - 3240841 + g 88 -10.3 -3.61164 | opp_overlap 3240828, overlap 3240811 TACTATCAGGTTCTG CAATTTCGAAATT TAAC AATTTTGAAATTG GTTTTTTCCCAAGTT TERM 4265 3241379 - 3241334 - R 100 -12.9 -4.00447 | opp_overlap 3241334 3241335, overlap 3241335 AAAATAAATTAATAA CTTCTAAATTTCAGATGGAGC TAAA ACCCCACCTAAAATTTAGAAA TTCCTCTATTGAAAC TERM 4266 3241378 - 3241335 - R 100 -14.2 -2.97828 | opp_overlap 3241335 3241334, overlap 3241334 AAATAAATTAATAAC TTCTAAATTTCAGATGGAGC TAAA ACCCCACCTAAAATTTAGAA ATTCCTCTATTGAAA CLL_A3131 3242250 - 3241402 - | PTS system mannose/fructose/sorbose family IID component CLL_A3132 3243007 - 3242240 - | PTS system sorbose-specific iic component CLL_A3133 3243543 - 3243067 - | PTS system, mannose/fructose/sorbose family, IIB component CLL_A3134 3244225 - 3243683 - | hypothetical protein nagA 3244399 - 3245538 + | N-acetylglucosamine-6-phosphate deacetylase TERM 4267 3245859 - 3245836 - T 100 -11.2 -5.9218 | opp_overlap 3245836 3245840 TAGATAACAAAAAAA TAAATCAACC AAAA GGTTGATTTA TTAGGTCTATAAGTT TERM 4268 3245836 - 3245859 + T 90 -11.2 -3.16743 | opp_overlap 3245836, overlap 3245840 TAGATAACAAAAAAA TAAATCAACC AAAA GGTTGATTTA TTAGGTCTATAAGTT TERM 4269 3245840 - 3245855 + T 78 -7.6 -4.24285 | opp_overlap 3245836, overlap 3245836 TAACAAAAAAATAAA TCAACC AAAA GGTTGA TTTATTAGGTCTATA CLL_A3136 3246699 - 3245866 - | prephenate dehydrogenase aroF 3247729 - 3246716 - | phospho-2-dehydro-3-deoxyheptonate aldolase TERM 4270 3247104 - 3247123 + g 72 -3.6 -5.32944 | opp_overlap 3247104 ATTGTAGCTGATAAG CCTCTTTT TAAT AAAATAGG TTTTTTAGTTCTACC aroK 3248309 - 3247812 - | shikimate kinase aroE 3249135 - 3248323 - | shikimate 5-dehydrogenase TERM 4271 3248414 - 3248428 + g 71 -8.6 -2.91276 | opp_overlap 3248412, overlap 3248413 TCTGATGACTTAATC GCTTGT CCT ACAAGC ATTTCTAAACCACCA CLL_A3140 3250301 - 3249159 - | P-protein aroC 3251565 - 3250492 - | chorismate synthase aroA 3252844 - 3251543 - | 3-phosphoshikimate 1-carboxyvinyltransferase aroB 3253989 - 3252937 - | 3-dehydroquinate synthase aroF 3255190 - 3254177 - | phospho-2-dehydro-3-deoxyheptonate aldolase TERM 4272 3255408 - 3255383 - R 90 -6.2 -5.88565 | overlap 3255361 3255360 TTTATAATAAAAAAA TAGAGCCCAC ATATTA ATGAGCTCTA CTATAATATATTCCA CLL_A3145 3256090 - 3255959 - | hypothetical protein TERM 4273 3257692 - 3257676 - g 77 -9.5 -2.91822 | overlap 3257675 TATAATAATCTAAAT GTTACTG CAA CAGTAAC TCCATATGCTGAAAG TERM 4274 3257904 - 3257923 + G 79 -9.4 -3.28712 | GAGGATGGTTACACT GTAGTAGA TATC TCTACTAC TTATGACGGCAGAGC CLL_A3146 3256224 - 3258092 + | chitinase B TERM 4275 3258110 - 3258145 + T 95 -10.6 -4.21314 | opp_overlap 3258111 3258116 3258120, overlap 3258112 GATTATATTTAATAC ATGGAATGAATCATAC TTAA GTATGATTCATTCCTC TTTTCACATCTTATT TERM 4276 3258144 - 3258111 - T 100 -14.1 -3.1241 | opp_overlap 3258110 3258112, overlap 3258116 3258120 ATTATATTTAATACA TGGAATGAATCATAC TTAA GTATGATTCATTCCT CTTTTCACATCTTAT TERM 4277 3258112 - 3258143 + T 100 -17.6 -3.69449 | opp_overlap 3258111 3258116 3258120, overlap 3258110 TTATATTTAATACAT GGAATGAATCATAC TTAA GTATGATTCATTCC TCTTTTCACATCTTA TERM 4278 3258139 - 3258116 - T 90 -11.2 -3.19442 | opp_overlap 3258112 3258110, overlap 3258111 3258120 ATTTAATACATGGAA TGAATCATAC TTAA GTATGATTCA TTCCTCTTTTCACAT CLL_A3147 3259665 - 3258232 - | cardiolipin synthetase TERM 4279 3258482 - 3258493 + g 71 -4.4 -4.93898 | ACCATAGCCTTAGCA TGGA TAAA TCCA TTTTTATAATAATAT putP 3261341 - 3259869 - | sodium/proline symporter TERM 4280 3261926 - 3261956 + H 100 -9.8 -5.63374 | GTACCGCGGAATTTT GCTTTCGTCTCTTA ATT TTAGAGATGAGAGC TTTTTTTAATGTTCA TERM 4281 3264051 - 3264035 - g 70 -3 -5.30686 | overlap 3264047 AAGATGCAGAAAAAA TGCAAT TTAAT ACTGCA ATAGCAAGACTTATG leuS 3262009 - 3264459 + | leucyl-tRNA synthetase TERM 4282 3264534 - 3264505 - T 100 -10.2 -5.4756 | opp_overlap 3264505 AATTTTAATAAAAAA TAGTAACCCGAA TGTTTT TTCAGGTTACTA TTTTTTATATTTTCA TERM 4283 3264505 - 3264534 + T 100 -8 -5.63645 | opp_overlap 3264505 AATTTTAATAAAAAA TAGTAACCCGAA TGTTTT TTCAGGTTACTA TTTTTTATATTTTCA TERM 4284 3264902 - 3264959 + T 75 -9.5 -2.69725 | gap 1, opp_overlap 3264902 3264915, overlap 3264902 3264915 AACTCTTAATAAAGA TTTGTTGAATTAATGCTTGT-CCTAATG TTT CATTGGGAACATGCATTAATTAGACTAA GCTTTATTTTTAGAG CLL_A3150 3267151 - 3265049 - | methyl-accepting chemotaxis protein TERM 4285 3265373 - 3265398 + g 73 -7.7 -3.83844 | gap 1 TGTTGTTCTCTTAAC TGCTTGT-GAAC TTT GTTCTGCAAGCA TTCTTACTTCATCAG TERM 4286 3266779 - 3266764 - G 70 -6.2 -4.20106 | opp_overlap 3266764 3266774 3266776 AAATTCCACTCAAAA TATGCA AAGC TGCATA TTCATCAGGATATGT CLL_A3151 3267987 - 3267256 - | maltose transacetylase TERM 4287 3267309 - 3267319 + g 70 -5.4 -4.63044 | opp_overlap 3267305, overlap 3267305 3267305 GATTTAATTCACTTT TACC AAA GGTA TTTCTTTCTCTAAAT TERM 4288 3267997 - 3268021 + r 72 -6 -4.5477 | opp_overlap 3267997 3268000 CTTCATGATTATTAA TAATTATTAA ATAAA TTAATAATTA TTTTCTCCTCTCTTA CLL_A3152 3268192 - 3268034 - | hypothetical protein TERM 4289 3268268 - 3268247 - R 100 -10.3 -5.95286 | ACTAAAAATAAAAAA GTATCTATG AATT CATAGATAC CAAAACTTAAAATCA TERM 4290 3268604 - 3268652 + r 100 -29.5 -5.63504 | opp_overlap 3268604 CATTTAAATAAAAAA TCTGTATGTACTTTAAGCGTTTT TAT AAAACGCTTAAAGTACATACAGA TTTTTTTATAACCTT TERM 4291 3268652 - 3268604 - R 100 -29.5 -5.65927 | opp_overlap 3268604 CATTTAAATAAAAAA TCTGTATGTACTTTAAGCGTTTT TAT AAAACGCTTAAAGTACATACAGA TTTTTTTATAACCTT CLL_A3153 3269426 - 3268677 - | hypothetical protein CLL_A3154 3269670 - 3269999 + | HesB family protein TERM 4292 3270009 - 3270035 + T 100 -12.6 -5.96894 | opp_overlap 3270009 3270014 CACTAATATATATAA TACAATTACTTA ATT TAAGTAATTGTA TTTTTTTATTTACCT TERM 4293 3270035 - 3270009 - T 95 -12.6 -3.70033 | opp_overlap 3270009, overlap 3270014 CACTAATATATATAA TACAATTACTTA ATT TAAGTAATTGTA TTTTTTTATTTACCT CLL_A3155 3270736 - 3270041 - | hypothetical protein TERM 4294 3270687 - 3270661 - G 75 -5.4 -4.99056 | TAACATAACTAAAAA TATTTATTATTA AGC TAATAGTAAATA ATACAGTTATAATAA CLL_A3156 3272121 - 3270790 - | hypothetical protein CLL_A3157 3273325 - 3272237 - | ATPase family protein TERM 4295 3272394 - 3272408 + g 78 -7.2 -4.55697 | opp_overlap 3272394 GAAAATAATATTAAA TTCTTC TCT GAAGAA TTTCTTTCTACAAAT TERM 4296 3272408 - 3272394 - G 72 -7.2 -4.06825 | opp_overlap 3272394 GAAAATAATATTAAA TTCTTC TCT GAAGAA TTTCTTTCTACAAAT CLL_A3158 3274362 - 3273583 - | hypothetical protein TERM 4297 3274395 - 3274443 + r 100 -20.9 -3.78699 | opp_overlap 3274398 3274400 3274405, overlap 3274398 3274405 TTTTAAAATTTTATC TAATATTAAAGCTATGTTTGACA TAC TATCAAACATAGCTTTAATATTA TTCTCTATATTTTTC TERM 4298 3274440 - 3274398 - R 100 -20.4 -3.09681 | opp_overlap 3274395 3274398 3274405, overlap 3274400 3274405 TAAAATTTTATCTAA TATTAAAGCTATGTTTGACA TAC TATCAAACATAGCTTTAATA TTATTCTCTATATTT TERM 4299 3274398 - 3274440 + r 100 -18.2 -3.97694 | opp_overlap 3274398 3274400 3274405, overlap 3274395 3274405 TAAAATTTTATCTAA TATTAAAGCTATGTTTGACA TAC TATCAAACATAGCTTTAATA TTATTCTCTATATTT TERM 4300 3274438 - 3274400 - R 100 -18.6 -3.10071 | opp_overlap 3274398 3274395 3274405, overlap 3274398 3274405 AAATTTTATCTAATA TTAAAGCTATGTTTGACA TAC TATCAAACATAGCTTTAA TATTATTCTCTATAT TERM 4301 3274405 - 3274433 + r 100 -11.9 -4.02742 | opp_overlap 3274400 3274398 3274405, overlap 3274398 3274395 TTATCTAATATTAAA GCTATGTTTGACA TAC TATCAAACATAGC TTTAATATTATTCTC TERM 4302 3274433 - 3274405 - R 100 -14.1 -3.93782 | opp_overlap 3274405 3274398 3274395, overlap 3274400 3274398 TTATCTAATATTAAA GCTATGTTTGACA TAC TATCAAACATAGC TTTAATATTATTCTC CLL_A3159 3275232 - 3274441 - | RelA/spoT family protein TERM 4303 3274701 - 3274691 - G 74 -6.8 -4.28774 | TCATCTAATTTAAAA GCTG CGT CAGC TGAACTTTTAAGTTT CLL_A3160 3275419 - 3276099 + | hypothetical protein CLL_A3161 3276253 - 3277110 + | putative methyl-accepting chemotaxis protein TERM 4304 3277183 - 3277222 + T 77 -4.7 -5.29445 | gap 1, opp_overlap 3277178 3277183 AAATAAACAATAAAA GCATAAAAAA-ATGTA TGATATATT TACATCTTTTTTATGC TTTTTATTATTAACA TERM 4305 3277222 - 3277183 - T 74 -4.7 -5.10765 | gap 1, opp_overlap 3277183, overlap 3277178 AAATAAACAATAAAA GCATAAAAAA-ATGTA TGATATATT TACATCTTTTTTATGC TTTTTATTATTAACA CLL_A3162 3279653 - 3277275 - | spore cortex-lytic enzyme, pre-pro-form TERM 4306 3279916 - 3279943 + r 100 -13 -4.41114 | opp_overlap 3279916 TCCTTATACAAAAAA GATGTTGAAAAA ATAT TTTTTCAACATC TTTATTCTATAATCA TERM 4307 3279943 - 3279916 - R 100 -13 -5.36441 | opp_overlap 3279916 TCCTTATACAAAAAA GATGTTGAAAAA ATAT TTTTTCAACATC TTTATTCTATAATCA CLL_A3163 3280637 - 3279945 - | Ser/Thr protein phosphatase family protein TERM 4308 3280300 - 3280323 + g 75 -7 -4.10855 | opp_overlap 3280303, overlap 3280303 GTACCGCAAATCGCA TAATTTTTAT AAGT ATAAAAATTA TTTTGAAGAAATTTT CLL_A3164 3280928 - 3280668 - | flagella-associated protein CLL_A3165 3282859 - 3280976 - | hypothetical protein TERM 4309 3282208 - 3282231 + g 70 -6.9 -3.94773 | opp_overlap 3282214 TTGATAAATCACCAT TAAAAAGCT CATTAA AGCTTTTTA TATTTTCTGTTGAGA TERM 4310 3283282 - 3283254 - R 100 -12 -5.49729 | opp_overlap 3283244 3283254 AATTACCTAAAAAAA TAGGATTTGAAA TAATT TTTCAAATCCTA TTTTTTAATTACAAT TERM 4311 3283254 - 3283282 + r 100 -12 -5.27477 | opp_overlap 3283254, overlap 3283244 AATTACCTAAAAAAA TAGGATTTGAAA TAATT TTTCAAATCCTA TTTTTTAATTACAAT tyrS 3284544 - 3283324 - | tyrosyl-tRNA synthetase CLL_A3167 3286093 - 3284975 - | spore germination protein CLL_A3168 3287490 - 3286093 - | spore germination protein CLL_A3169 3287670 - 3288767 + | spore germination protein TERM 4312 3288795 - 3288838 + T 100 -13.6 -4.70659 | gap 1, opp_overlap 3288795 3288797 3288809, overlap 3288797 ATCATAATAGAGAAA T-AGCCATTACAAAACTAACT AAA AATTAGTTTTGTAATGGCTTA TTTTTAAGTATGCAC TERM 4313 3288837 - 3288795 - T 100 -17.4 -4.25389 | opp_overlap 3288795 3288797, overlap 3288797 3288809 ATCATAATAGAGAAA TAGCCATTACAAAACTAACT AAA AATTAGTTTTGTAATGGCTT ATTTTTAAGTATGCA TERM 4314 3288797 - 3288835 + T 100 -17.8 -4.46215 | opp_overlap 3288795 3288797 3288809, overlap 3288795 CATAATAGAGAAATA GCCATTACAAAACTAACT AAA AATTAGTTTTGTAATGGC TTATTTTTAAGTATG TERM 4315 3288835 - 3288797 - T 100 -20 -3.71649 | opp_overlap 3288797 3288795, overlap 3288795 3288809 CATAATAGAGAAATA GCCATTACAAAACTAACT AAA AATTAGTTTTGTAATGGC TTATTTTTAAGTATG CLL_A3170 3289699 - 3289151 - | membrane spanning protein TERM 4316 3289666 - 3289680 + g 80 -5.8 -5.14698 | opp_overlap 3289665 CCATTAACACTAATT CTTTAA CAT TTAAAG TTTTATTTTCACTTT trpS 3289965 - 3290975 + | tryptophanyl-tRNA synthetase TERM 4317 3290975 - 3291033 + T 93 -10.9 -3.38609 | gap 1, opp_overlap 3290973 3290977 3290978 3290993, overlap 3290977 3290978 3290993 ATTCATTCCAAGATA AAGTT-TTTAAAACAAAAAGCTATGATT TTTA AATCATAGCTTTTTGTTTTAAGCAAATG TTGATATCTTAAATT TERM 4318 3291030 - 3290977 - T 100 -12.9 -4.20368 | opp_overlap 3290975 3290977 3290978 3290993, overlap 3290973 3290978 3290993 TCATTCCAAGATAAA GTTTTTAAAACAAAAAGCTATGATT TTTA AATCATAGCTTTTTGTTTTAAGCAA ATGTTGATATCTTAA TERM 4319 3290977 - 3291031 + T 100 -13.5 -3.25475 | gap 1, opp_overlap 3290973 3290977 3290978 3290993, overlap 3290975 3290978 3290993 TCATTCCAAGATAAA GTT-TTTAAAACAAAAAGCTATGATT TTTA AATCATAGCTTTTTGTTTTAAGCAAA TGTTGATATCTTAAA TERM 4320 3290978 - 3291030 + T 100 -17 -2.54803 | gap 1, opp_overlap 3290973 3290978 3290977 3290993, overlap 3290977 3290975 3290993 CATTCCAAGATAAAG TT-TTTAAAACAAAAAGCTATGATT TTTA AATCATAGCTTTTTGTTTTAAGCAA ATGTTGATATCTTAA TERM 4321 3291029 - 3290978 - T 100 -16.4 -3.11738 | opp_overlap 3290977 3290975 3290978 3290993, overlap 3290973 3290977 3290993 CATTCCAAGATAAAG TTTTTAAAACAAAAAGCTATGATT TTTA AATCATAGCTTTTTGTTTTAAGCA AATGTTGATATCTTA TERM 4322 3290993 - 3291014 + T 100 -10.3 -5.45802 | opp_overlap 3290978 3290977 3290993, overlap 3290978 3290977 3290975 TTTTTAAAACAAAAA GCTATGATT TTTA AATCATAGC TTTTTGTTTTAAGCA TERM 4323 3291014 - 3290993 - T 100 -10.3 -5.45802 | opp_overlap 3290993 3290978 3290977 3290975, overlap 3290978 3290977 TTTTTAAAACAAAAA GCTATGATT TTTA AATCATAGC TTTTTGTTTTAAGCA galU 3291925 - 3291053 - | UTP-glucose-1-phosphate uridylyltransferase TERM 4324 3291418 - 3291431 + g 73 -5.3 -4.81212 | GTCCATCAACTATTC CGTAT TTTG ATACG TTTTCTTGTGCTACA TERM 4325 3291597 - 3291610 + g 70 -5.3 -4.59846 | overlap 3291595 CAATGAATTGCATGA CCTAA TCCT TTAGG TTCTTTTTGTCTAAT brnQ 3292273 - 3293544 + | branched-chain amino acid transport system II carrier protein TERM 4326 3293552 - 3293586 + T 100 -16 -4.56736 | opp_overlap 3293557, overlap 3293557 TAGTATAAGAAAATG AAAAATGCAGAAGGAA AAA TTCCTTCTGCATTTTA TTTTAATTATTAGCT TERM 4327 3293581 - 3293557 - T 100 -15.9 -5.17786 | opp_overlap 3293552 3293557 TAAGAAAATGAAAAA TGCAGAAGGAA AAA TTCCTTCTGCA TTTTATTTTAATTAT TERM 4328 3293557 - 3293581 + T 100 -15.9 -5.19998 | opp_overlap 3293557, overlap 3293552 TAAGAAAATGAAAAA TGCAGAAGGAA AAA TTCCTTCTGCA TTTTATTTTAATTAT CLL_A3174 3294812 - 3293709 - | lipopolysaccharide biosynthesis protein TERM 4329 3294892 - 3294902 + r 71 -5.4 -4.70772 | opp_overlap 3294892, overlap 3294887 AAGTTTTAGTTAAAA GTCT TAA AGAC TTTTCTTAAATATAT pglB 3295646 - 3295041 - | bacterial sugar transferase CLL_A3176 3297017 - 3295797 - | WblI protein TERM 4330 3296861 - 3296874 + g 76 -3.9 -5.4833 | CTTCAAAATCCTCTG TAATC TTAG GATTA TTTTTTCTTAAATGA TERM 4331 3296906 - 3296896 - G 71 -4 -5.04325 | opp_overlap 3296896 CTTAAATGAGAAAAA TTAG CAC CTAA TATAGTAACATTATG TERM 4332 3297354 - 3297398 + r 95 -10.4 -4.21744 | gap 1, opp_overlap 3297359, overlap 3297359 TATATTTTATATAAT TTAAACTCACATTAGTTTGAA TAAA TTCAAAC-AATGTGAGTTCAG TTTCCTTTATTCCAT TERM 4333 3297393 - 3297359 - R 95 -12.5 -3.83323 | gap 1, opp_overlap 3297354 3297359 TTTATATAATTTAAA CTCACATTAGTTTGAA TAAA TTCAAAC-AATGTGAG TTCAGTTTCCTTTAT TERM 4334 3297359 - 3297393 + r 95 -12.5 -3.36188 | gap 1, opp_overlap 3297359, overlap 3297354 TTTATATAATTTAAA CTCACATTAGTTTGAA TAAA TTCAAAC-AATGTGAG TTCAGTTTCCTTTAT CLL_A3177 3299201 - 3297450 - | putative lipoprotein TERM 4335 3298927 - 3298945 + g 71 -7.6 -3.61971 | overlap 3298925 TCTTTAGTACTACCA TCTTTATT CAA AATAAAGA TATTATTATTATATA TERM 4336 3298951 - 3298961 + g 71 -2.6 -5.5604 | opp_overlap 3298951 AAAATAAAGATATTA TTAT TAT ATAA TTTTTTATTAGTTGA TERM 4337 3299343 - 3299365 + r 76 -9.4 -2.93623 | opp_overlap 3299342 3299341, overlap 3299340 TGTTTTAAGTAAATG TTGATATTAT ACT ATAATATCAA TGCTATTTTAAAACA CLL_A3178 3300124 - 3299537 - | gp56 TERM 4338 3299903 - 3299927 + g 71 -4.3 -4.82667 | overlap 3299904 CATCATTCCATTTTC ATCAGAATGAT ACC ATCCTTCTGAA TTTTTGGTATGATGG TERM 4339 3299904 - 3299926 + g 70 -7.8 -3.48877 | overlap 3299903 ATCATTCCATTTTCA TCAGAATGAT ACC ATCCTTCTGA ATTTTTGGTATGATG TERM 4340 3300095 - 3300111 + g 78 -2.4 -5.9003 | GACTAAAGCTGCTGC TATTAA TTTGT TTAATA TTTTTTTCTTCATTT CLL_A3179 3301692 - 3300307 - | putative sensor histidine kinase CLL_A3180 3302447 - 3301719 - | alkaline phosphatase synthesis transcriptional regulatory proteinphoP TERM 4341 3302592 - 3302626 + r 89 -9.5 -4.26305 | gap 1, opp_overlap 3302596 3302598, overlap 3302582 3302597 3302598 3302600 TTTTACTTTTCTATA TAAATATAGGGAGGCT TTAA AGCCTCCCTA-ATTAA TTTATCTTAAATTTT TERM 4342 3302622 - 3302596 - R 95 -10.3 -4.03413 | gap 1, opp_overlap 3302582 3302592 3302597 3302598 3302600, overlap 3302598 ACTTTTCTATATAAA TATAGGGAGGCT TTAA AGCCTCCCTA-A TTAATTTATCTTAAA TERM 4343 3302597 - 3302622 + r 95 -11.9 -3.69341 | opp_overlap 3302596 3302598, overlap 3302582 3302592 3302598 3302600 CTTTTCTATATAAAT ATAGGGAGGCT TTAA AGCCTCCCTAA TTAATTTATCTTAAA TERM 4344 3302621 - 3302598 - R 100 -15.4 -3.61232 | opp_overlap 3302582 3302597 3302592 3302598 3302600, overlap 3302596 TTTTCTATATAAATA TAGGGAGGCT TTAA AGCCTCCCTA ATTAATTTATCTTAA TERM 4345 3302598 - 3302621 + r 100 -15.4 -2.80881 | opp_overlap 3302598 3302596, overlap 3302582 3302597 3302592 3302600 TTTTCTATATAAATA TAGGGAGGCT TTAA AGCCTCCCTA ATTAATTTATCTTAA TERM 4346 3302600 - 3302619 + r 95 -13.6 -2.93941 | opp_overlap 3302598 3302596, overlap 3302582 3302598 3302597 3302592 TTCTATATAAATATA GGGAGGCT TTAA AGCCTCCC TAATTAATTTATCTT CLL_A3181 3303979 - 3302729 - | amylovoran biosynthesis AmsK CLL_A3182 3304299 - 3305363 + | UDP-N-acetylglucosamine 2-epimerase TERM 4347 3305394 - 3305361 - T 100 -10.6 -4.4522 | gap 1, opp_overlap 3305361 3305370, overlap 3305370 CAAAATTATAAGAAA TAATAAAAACGTGGC ATAAA GCCACGTTTTT-TTA TATTATATCTTAAAG TERM 4348 3305361 - 3305394 + T 90 -10.6 -3.41962 | gap 1, opp_overlap 3305361 3305370, overlap 3305370 CAAAATTATAAGAAA TAATAAAAACGTGGC ATAAA GCCACGTTTTT-TTA TATTATATCTTAAAG TERM 4349 3305370 - 3305386 + T 100 -9.4 -5.84432 | opp_overlap 3305361 3305370, overlap 3305361 AAGAAATAATAAAAA CGTGGC ATAAA GCCACG TTTTTTTATATTATA TERM 4350 3305386 - 3305370 - T 100 -9.4 -5.44198 | opp_overlap 3305370 3305361, overlap 3305361 AAGAAATAATAAAAA CGTGGC ATAAA GCCACG TTTTTTTATATTATA CLL_A3183 3306255 - 3305404 - | hypothetical protein CLL_A3184 3306893 - 3306225 - | hypothetical protein TERM 4351 3306582 - 3306558 - GR 71 -8.1 -3.0955 | opp_overlap 3306558 3306556, overlap 3306546 3306556 3306549 AAACCATATAAAGTA TATAGATAAAA TCT TCTTATCTATA TGTCTTATAACATCT CLL_A3185 3308635 - 3307145 - | hypothetical protein TERM 4352 3308063 - 3308049 - G 70 -5 -4.64334 | opp_overlap 3308049 3308052, overlap 3308036 3308052 AATGCTTCAATAAAA GCATCA GCA TAATGC TTAATTGGTAATTGC CLL_A3186 3310500 - 3308638 - | capsular polysaccharide biosynthesis protein TERM 4353 3308814 - 3308801 - G 72 -6.7 -4.13014 | opp_overlap 3308801 3308800 TCCATATCTTCAAAA GTTGG TTTT CCAAC GTATATCTTTTGATG CLL_A3187 3311548 - 3310565 - | glycosyltransferase, GT2 family CLL_A3188 3312660 - 3311782 - | LicD family protein TERM 4354 3312711 - 3312690 - H 74 -5.9 -4.67353 | opp_overlap 3312694 3312695, overlap 3312695 CGATGTACTTAAAAA CAAAATCGC CAAG GCGACTTTA AAACCATCGATTTTT TERM 4355 3312706 - 3312695 - H 81 -5.8 -5.2853 | opp_overlap 3312695 3312694, overlap 3312690 TACTTAAAAACAAAA TCGC CAAG GCGA CTTTAAAACCATCGA CLL_A3189 3312933 - 3313940 + | minor teichoic acid biosynthesis protein GgaB TERM 4356 3314024 - 3313997 - T 76 -9.3 -2.83788 | opp_overlap 3313997, overlap 3313996 ATTGAACTTAAGAAT GCTAAAATGAG TATAGT CCCATTTTAGC TTGCTCTCAATATAA CLL_A3190 3315288 - 3314377 - | sugar transport system permease protein TERM 4357 3315326 - 3315314 - R 81 -5.5 -5.36441 | opp_overlap 3315314 CCCCTACATAAAAAA GTGGC TGC ACCAC GTTTTTTAGTTGAGA CLL_A3191 3316439 - 3315543 - | ABC transporter, permease protein TERM 4358 3315858 - 3315828 - G 91 -11.3 -3.11732 | opp_overlap 3315823 3315821, overlap 3315832 TTTAAATTTATTTAA TGAATCAGCCCCA TCAAT TGAAGCTGATTCA TATAAATCTTTAGGT CLL_A3192 3318270 - 3316948 - | putative glycerol-3-phosphate ABC transporter, glycerol-3-phosphate-binding protein TERM 4359 3318451 - 3318428 - R 100 -9 -5.8187 | opp_overlap 3318428 TATGCAACAAAAAAA TGCAAACTAA AATT CTAGTTTGCA TTTTCATATACATTT TERM 4360 3318428 - 3318451 + r 82 -8.3 -4.37534 | opp_overlap 3318428 TATGCAACAAAAAAA TGCAAACTA AAATTC TAGTTTGCA TTTTCATATACATTT CLL_A3193 3319350 - 3318484 - | hydrolase, Cof family CLL_A3194 3321410 - 3319404 - | putative signaling protein TERM 4361 3319435 - 3319459 + g 71 -8.7 -2.924 | overlap 3319434 TAATACGTATCTTTT CCTTGTTTTTT AGC AAAATACAAGG CTTTATCGGCACTTA TERM 4362 3320588 - 3320611 + g 77 -4.8 -5.22943 | gap 1, opp_overlap 3320574 3320573 3320588 3320590, overlap 3320574 CTACCCAATTAGAAT TAGGT-ATTTT ATA AAAATAACCTA TTTTTTCAATTTCAT TERM 4363 3321809 - 3321771 - R 80 -2.6 -6.14618 | TATAAAATAAAAAAA TCTTCAGGTAAATTTA TAATAAT TCATTTTACCTAAAGA TTTTTATATAGACTT CLL_A3195 3322888 - 3321917 - | integral membrane protein domain protein TERM 4364 3323043 - 3323002 - R 90 -10.5 -3.33315 | opp_overlap 3323009, overlap 3323009 GCAATATGTTCACAA TAAAAAAGAAGCAAAGTTA TTAA TAACTCTACTTCTCTTTCA TTATGTCATTTAAAT TERM 4365 3323036 - 3323009 - R 100 -8.6 -5.55769 | opp_overlap 3323009, overlap 3323002 GTTCACAATAAAAAA GAAGCAAAGTTA TTAA TAACTCTACTTC TCTTTCATTATGTCA CLL_A3196 3323851 - 3323144 - | putative collagenolytic protease TERM 4366 3323532 - 3323551 + g 70 -3 -5.24003 | gap 1 ACCAAATTCTTTCTA TCT-AAAAC ATA GTTTTCAGA TTTTTCATTTTTATT TERM 4367 3323984 - 3323945 - R 85 -11 -2.79273 | opp_overlap 3323950, overlap 3323950 GTTTCTTAATAGAAC TAAAAGCGTGAAATTTAA ATAA TAAAATTTCACGCTTTTT TAATTTAAAAATTAG TERM 4368 3323979 - 3323950 - R 100 -10.9 -4.56314 | opp_overlap 3323950, overlap 3323945 TTAATAGAACTAAAA GCGTGAAATTTAA ATAA TAAAATTTCACGC TTTTTTAATTTAAAA TERM 4369 3323950 - 3323979 + r 100 -10.9 -5.37593 | opp_overlap 3323950 3323945 TTAATAGAACTAAAA GCGTGAAATTTAA ATAA TAAAATTTCACGC TTTTTTAATTTAAAA CLL_A3197 3325686 - 3324220 - | polysaccharide biosynthesis protein TERM 4370 3325899 - 3325957 + r 87 -7.2 -5.17054 | opp_overlap 3325904 3325913 3325919, overlap 3325913 3325919 TAATGGTGCTGAATT TGAAATTTTTATAAGATAAATACATATT TAA AATATGTATTTATCTTATACTAAGCTTA TTTTTTAGATATTCT TERM 4371 3325952 - 3325904 - R 100 -13.7 -3.66178 | opp_overlap 3325899 3325913 3325919, overlap 3325913 3325919 GTGCTGAATTTGAAA TTTTTATAAGATAAATACATATT TAA AATATGTATTTATCTTATACTAA GCTTATTTTTTAGAT TERM 4372 3325943 - 3325913 - R 100 -14.4 -3.3506 | opp_overlap 3325899 3325913 3325919, overlap 3325904 3325919 TTGAAATTTTTATAA GATAAATACATATT TAA AATATGTATTTATC TTATACTAAGCTTAT TERM 4373 3325913 - 3325943 + r 100 -14.4 -3.42841 | opp_overlap 3325913 3325904 3325919, overlap 3325899 3325919 TTGAAATTTTTATAA GATAAATACATATT TAA AATATGTATTTATC TTATACTAAGCTTAT TERM 4374 3325919 - 3325937 + r 78 -7.6 -4.29304 | opp_overlap 3325913 3325904 3325919, overlap 3325913 3325899 TTTTTATAAGATAAA TACATATT TAA AATATGTA TTTATCTTATACTAA TERM 4375 3325937 - 3325919 - R 78 -7.6 -4.27117 | opp_overlap 3325919 3325913 3325899, overlap 3325913 3325904 TTTTTATAAGATAAA TACATATT TAA AATATGTA TTTATCTTATACTAA CLL_A3198 3326637 - 3325939 - | LicC protein CLL_A3199 3328511 - 3326652 - | choline/ethanolamine kinase family protein TERM 4376 3328802 - 3328760 - R 100 -11.7 -5.80364 | opp_overlap 3328763, overlap 3328763 AGTCCAATAAAAAAA TAAGCTATATTTTAAGTTA AATTG CAACTTAAAATATAGCTTT AAAATGTTATGTTAA TERM 4377 3328763 - 3328799 + r 95 -12.7 -3.68662 | opp_overlap 3328760 3328763 CCAATAAAAAAATAA GCTATATTTTAAGTT AAATTGC AACTTAAAATATAGC TTTAAAATGTTATGT TERM 4378 3328799 - 3328763 - R 100 -13.4 -4.96435 | opp_overlap 3328763, overlap 3328760 CCAATAAAAAAATAA GCTATATTTTAAGTTA AATTG CAACTTAAAATATAGC TTTAAAATGTTATGT CLL_A3200 3329363 - 3328818 - | hypothetical protein CLL_A3201 3330343 - 3329720 - | hypothetical protein TERM 4379 3329952 - 3329971 + g 71 -2.8 -5.39905 | TCAAGCATAGTTTTT GAGGCTCT TTTA ATAGCTTC TTTTTCTTCTTTACT TERM 4380 3330619 - 3330589 - R 82 -4.2 -5.80248 | opp_overlap 3330589 TAATATATAAAAAAA TGAGATGATT CCTTTATACCT AATCATCTCA CTTTTATCTTATATA CLL_A3202 3333623 - 3330639 - | putative collagenolytic protease TERM 4381 3331746 - 3331732 - G 70 -5.8 -4.30576 | opp_overlap 3331730 TCTCCAGTATTAAAA TTTAAG TAA CTTAAA TATGCATTTTGGGTA TERM 4382 3334002 - 3334028 + r 74 -8.1 -3.46965 | opp_overlap 3333991 3334007, overlap 3334007 ATAATTTTTACATAA AAAAAGAAGGC TTTAC GCCTTCTTTTA TTCTAATACTATGTT TERM 4383 3334007 - 3334023 + r 86 -8 -4.81814 | opp_overlap 3334007, overlap 3334002 TTTTACATAAAAAAA GAAGGC TTTAC GCCTTC TTTTATTCTAATACT TERM 4384 3334023 - 3334007 - R 100 -8 -5.71712 | opp_overlap 3334007 3334002 TTTTACATAAAAAAA GAAGGC TTTAC GCCTTC TTTTATTCTAATACT CLL_A3203 3334134 - 3333994 - | hypothetical protein CLL_A3204 3336163 - 3334166 - | surface protein PspC TERM 4385 3336394 - 3336442 + r 100 -19.4 -4.22226 | opp_overlap 3336394, overlap 3336399 CCATAGAAAAAAAAA GAAAAGAATCTTCTACTTAAAC TTAAT GTTTAAGTAGAAGATTCTTTTG TTTAATTTCTCTTAT TERM 4386 3336442 - 3336394 - R 100 -19.4 -6.30182 | opp_overlap 3336394 3336399 CCATAGAAAAAAAAA GAAAAGAATCTTCTACTTAAAC TTAAT GTTTAAGTAGAAGATTCTTTTG TTTAATTTCTCTTAT TERM 4387 3336399 - 3336437 + r 100 -19.3 -5.06223 | opp_overlap 3336394, overlap 3336394 GAAAAAAAAAGAAAA GAATCTTCTACTTAAAC TTAAT GTTTAAGTAGAAGATTC TTTTGTTTAATTTCT CLL_A3205 3338680 - 3336467 - | surface protein PspC CLL_A3206 3339021 - 3339290 + | putative anaerobic ribonucleoside-triphosphate reductase TERM 4388 3339640 - 3339627 - g 93 -5.3 -5.85425 | opp_overlap 3339627 3339625 GAAAGAAATAAAAAA GCTTT AAAA AAAGC TGTTAATAAAGGTGT CLL_A3207 3339546 - 3340373 + | phosphatase YidA TERM 4389 3340479 - 3340449 - f 100 -10 -5.68023 | opp_overlap 3340449 GCACAATTAAAAAAA TGTAATAAACGTAT TTT ATACCTTTATTACA TTTATATTATCTTTA TERM 4390 3340449 - 3340479 + F 95 -10 -4.36854 | opp_overlap 3340449 GCACAATTAAAAAAA TGTAATAAACGTAT TTT ATACCTTTATTACA TTTATATTATCTTTA CLL_A3208 3340668 - 3341498 + | pyridoxine kinase TERM 4391 3341551 - 3341496 - T 81 -7.5 -4.42238 | gap 2, opp_overlap 3341496 3341508, overlap 3341499 3341501 3341508 CTATGCGAATTAAAA TA-ACATAAT-TAATTTTGGCTATGTT TTAA AACATAGCCAAAATTTTATTATATGTA TTTTTCTAAATTCAT TERM 4392 3341496 - 3341551 + T 75 -5.3 -4.92314 | gap 2, opp_overlap 3341496 3341499 3341501 3341508, overlap 3341508 CTATGCGAATTAAAA TA-ACATAAT-TAATTTTGGCTATGTT TTAA AACATAGCCAAAATTTTATTATATGTA TTTTTCTAAATTCAT TERM 4393 3341547 - 3341499 - T 95 -10.8 -4.32402 | gap 1, opp_overlap 3341496 3341508, overlap 3341496 3341501 3341508 TGCGAATTAAAATAA CATAAT-TAATTTTGGCTATGTT TTAA AACATAGCCAAAATTTTATTATA TGTATTTTTCTAAAT TERM 4394 3341545 - 3341501 - T 95 -11.2 -3.75762 | gap 1, opp_overlap 3341496 3341508, overlap 3341499 3341496 3341508 CGAATTAAAATAACA TAAT-TAATTTTGGCTATGTT TTAA AACATAGCCAAAATTTTATTA TATGTATTTTTCTAA TERM 4395 3341537 - 3341508 - T 100 -15.3 -3.59079 | opp_overlap 3341496 3341508, overlap 3341501 3341499 3341496 AAATAACATAATTAA TTTTGGCTATGTT TTAA AACATAGCCAAAA TTTTATTATATGTAT TERM 4396 3341508 - 3341537 + T 100 -15.3 -4.88495 | opp_overlap 3341508 3341501 3341499 3341496, overlap 3341496 AAATAACATAATTAA TTTTGGCTATGTT TTAA AACATAGCCAAAA TTTTATTATATGTAT trx 3341854 - 3341543 - | thioredoxin gidA 3342834 - 3341968 - | tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA TERM 4397 3343570 - 3343550 - g 74 -6.3 -4.51812 | TTTTATAACAACAAA TATAAAGAT AAA ATCTCTATA AAAAAAGGTATTGAA CLL_A3211 3343346 - 3344143 + | histidinol phosphate phosphatase HisJ family TERM 4398 3344224 - 3344256 + T 86 -4.3 -5.9362 | opp_overlap 3344224 3344235 AACTTACTAAAAAAA TCAGTTATAAAGAAT AAT ATATTCTATAACTGA TTTTTTTATATTTTA TERM 4399 3344256 - 3344224 - T 78 -4.3 -5.54894 | opp_overlap 3344224, overlap 3344235 AACTTACTAAAAAAA TCAGTTATAAAGAAT AAT ATATTCTATAACTGA TTTTTTTATATTTTA CLL_A3212 3346403 - 3344349 - | putative methyl-accepting chemotaxis protein TERM 4400 3344926 - 3344938 + g 77 -6.3 -4.74598 | TTTTCAACTATTTTA GCATT TTC AATGC TTTGTTTTAGATTTG TERM 4401 3346611 - 3346569 - R 100 -10.9 -4.04576 | opp_overlap 3346569 ATTTATATAATTAAA TGGAGTATTACAAAATTAT TTTAT ATTGTTTTGTAATACTCCA TTGTATATTAAAATT TERM 4402 3346569 - 3346611 + r 100 -13.1 -3.6914 | opp_overlap 3346569 ATTTATATAATTAAA TGGAGTATTACAAAATTAT TTTAT ATTGTTTTGTAATACTCCA TTGTATATTAAAATT TERM 4403 3346853 - 3346826 - R 100 -9.3 -5.32944 | opp_overlap 3346826 TTGAGAATCAAAAAA GATGATCTCTG AAAACA CAGAAATCATC TTTTTTAACTAATAC TERM 4404 3346826 - 3346853 + r 87 -7.1 -5.1101 | opp_overlap 3346826 TTGAGAATCAAAAAA GATGATCTCTG AAAACA CAGAAATCATC TTTTTTAACTAATAC gltA 3348347 - 3346956 - | glutamate synthase (NADPH), homotetrameric CLL_A3214 3349237 - 3348347 - | conserved electron-transfer protein TERM 4405 3349359 - 3349388 + r 80 -9.4 -3.13601 | opp_overlap 3349360 3349365, overlap 3349365 CTAATCTTAATAAGA ACAAAAGCTCTC TAAAGC GAGAGCTTTTGC TATATATTAAATTTG TERM 4406 3349387 - 3349360 - R 100 -12.9 -3.97139 | opp_overlap 3349359 3349365, overlap 3349365 TAATCTTAATAAGAA CAAAAGCTCTC TAAAGC GAGAGCTTTTG CTATATATTAAATTT TERM 4407 3349382 - 3349365 - R 83 -7 -5.00467 | opp_overlap 3349365 3349359, overlap 3349360 TTAATAAGAACAAAA GCTCTC TAAAGC GAGAGC TTTTGCTATATATTA TERM 4408 3349365 - 3349382 + r 77 -7 -4.4296 | opp_overlap 3349360 3349365, overlap 3349359 TTAATAAGAACAAAA GCTCTC TAAAGC GAGAGC TTTTGCTATATATTA CLL_A3215 3350652 - 3349486 - | NADPH-dependent butanol dehydrogenase TERM 4409 3350897 - 3350847 - R 75 -6.5 -4.54026 | gap 1, opp_overlap 3350892 3350893, overlap 3350844 TTTTAAATAAAATAA TGTCCTAAAACAATACA-CTCATC CATT GATAAAACGTACTATTTCAGGACA CTGTCCGTTTATATT CLL_A3216 3352996 - 3351083 - | signal-transduction and transcriptional-control protein TERM 4410 3353282 - 3353253 - R 76 -5.9 -4.77165 | opp_overlap 3353256 3353277, overlap 3353248 CTTTCTACAATAAAA TAACTAAGAAATA TTGA CATTCCTTAGTCA TTTTTATGTCTATAA CLL_A3217 3353745 - 3353302 - | 3D domain protein TERM 4411 3353874 - 3353863 - R 73 -2.2 -5.76633 | opp_overlap 3353872 CTACATATAAAAAAA TCAC CAAG GCGA CTGTGGAGCCGTTGA TERM 4412 3354071 - 3354052 - R 84 -5 -5.72254 | CTAAAGAATAAAAAA GTAGACCC ATCT GAATCTAC TTTAAAAAAATTTAT CLL_A3218 3354536 - 3354096 - | hypothetical protein TERM 4413 3354781 - 3354791 + r 83 -4 -5.9003 | opp_overlap 3354781 CTATTTTTATCAAAT TATG TAT CATA TTTTTTTATTAATTT TERM 4414 3354876 - 3354846 - R 70 -2.7 -5.53288 | gap 1, opp_overlap 3354846 TTTAATGCAAAAAAA TAGTAGCTTTACTC ATTT AAGTCA-GCTACTA TTTTTATTAATATCT prfC 3356493 - 3354898 - | peptide chain release factor 3 CLL_A3220 3361130 - 3356928 - | putative cell wall binding repeat protein TERM 4415 3357948 - 3357963 + g 91 -7.6 -5.22794 | ACGATCTGATTCCAT GGCATT ATCC AATGCC TTTTTTAATGCTTCT CLL_A3221 3361778 - 3361227 - | hypothetical protein TERM 4416 3362053 - 3361997 - R 100 -14.9 -6.09196 | opp_overlap 3362003 3362019, overlap 3361998 TTGAAAACAAAAAAA TTATGAGCTTTTATACCTATAATTGTT ATT AACAAATTTAAGTATAAAAGCTCATAT AAAAATGTTCTTTCA TERM 4417 3362052 - 3361998 - R 100 -18.4 -4.23077 | opp_overlap 3362003 3362019, overlap 3361997 TGAAAACAAAAAAAT TATGAGCTTTTATACCTATAATTGTT ATT AACAAATTTAAGTATAAAAGCTCATA TAAAAATGTTCTTTC TERM 4418 3362003 - 3362047 + r 81 -10.3 -2.63479 | opp_overlap 3361998 3361997, overlap 3362019 ACAAAAAAATTATGA GCTTTTATACCTATAATTGTT ATT AACAAATTTAAGTATAAAAGC TCATATAAAAATGTT CLL_A3222 3364158 - 3362071 - | ggdef domain protein TERM 4419 3362886 - 3362860 - G 78 -8.2 -3.89956 | overlap 3362861 GCAGTACACACCAAA GCTATTTCTATT GTC AATAGAAATAGA ACATAAATTTTTAAG TERM 4420 3362885 - 3362861 - G 93 -11.7 -2.93492 | overlap 3362860 CAGTACACACCAAAG CTATTTCTATT GTC AATAGAAATAG AACATAAATTTTTAA CLL_A3223 3365635 - 3364202 - | surface protein PspC TERM 4421 3366033 - 3366002 - R 100 -13.2 -5.55664 | opp_overlap 3366002 TTACTATTAAAAAAA GGAAGGTCACAT CTCTCTCT ATGTGACCTTCC TTTTTTTCTCTCTAA TERM 4422 3366002 - 3366033 + r 100 -13.2 -5.76633 | opp_overlap 3366002 TTACTATTAAAAAAA GGAAGGTCACAT CTCTCTCT ATGTGACCTTCC TTTTTTTCTCTCTAA TERM 4423 3366163 - 3366153 - R 70 -4 -5.10208 | opp_overlap 3366153 CAATTTTAACAAAAA TTTG ACT CAAA ATTTAAATATTAAAA TERM 4424 3366217 - 3366174 - R 83 -11.3 -2.72204 | opp_overlap 3366174 3366180, overlap 3366165 3366180 3366212 TCAAAATTTAAATAT TAAAAATGCCTTAGAGAAA ATTTAA TATCTCTAAGGCATTTTAA TTTAAAATAACATTA TERM 4425 3366174 - 3366217 + r 95 -11.3 -3.61103 | opp_overlap 3366165 3366174 3366180 3366212, overlap 3366180 TCAAAATTTAAATAT TAAAAATGCCTTAGAGAAA ATTTAA TATCTCTAAGGCATTTTAA TTTAAAATAACATTA TERM 4426 3366211 - 3366180 - R 100 -10.3 -4.93696 | opp_overlap 3366174 3366180, overlap 3366174 TTTAAATATTAAAAA TGCCTTAGAGAAA ATTTAA TATCTCTAAGGCA TTTTAATTTAAAATA TERM 4427 3366180 - 3366211 + r 100 -10.3 -4.55798 | opp_overlap 3366180 3366174, overlap 3366174 TTTAAATATTAAAAA TGCCTTAGAGAAA ATTTAA TATCTCTAAGGCA TTTTAATTTAAAATA CLL_A3224 3367520 - 3366291 - | cell wall binding repeat domain protein CLL_A3225 3369016 - 3367670 - | collagenolytic protease TERM 4428 3369116 - 3369078 - R 90 -6.1 -5.90981 | opp_overlap 3369078 TTATACCAAAAAAAA TGGTAACAGTCACCATT TACCT ATTAGCGACTATCACCA TTTTCAATTTAATTT TERM 4429 3369192 - 3369180 - R 73 -7.7 -3.73224 | TTACCTCTGACCAAA GGTGA CTG TCACC ACTTCAAAAAAGTGC CLL_A3226 3370151 - 3369240 - | SpsA protein TERM 4430 3370421 - 3370392 - R 100 -10.9 -4.44211 | overlap 3370389 TTGAATATAAAACAA GTGGCAGTTAT ACTATAAA ATAACTGCCAC CAAATAGTAAATACT CLL_A3227 3371922 - 3370438 - | collagenolytic protease TERM 4431 3372317 - 3372285 - R 100 -10.1 -4.4448 | opp_overlap 3372291, overlap 3372291 AAATTTTTAAAGAAA TAAAAAGTTACACTC TAC AAGTGTAACTTCTCA AATTCATAGTTTATT TERM 4432 3372311 - 3372291 - R 100 -9.1 -5.5454 | opp_overlap 3372291, overlap 3372285 TTAAAGAAATAAAAA GTTACACTC TAC AAGTGTAAC TTCTCAAATTCATAG TERM 4433 3372291 - 3372311 + r 74 -8.4 -3.37464 | opp_overlap 3372291 3372285 TTAAAGAAATAAAAA GTTACACT CTACA AGTGTAAC TTCTCAAATTCATAG CLL_A3228 3372723 - 3372406 - | collagenolytic protease TERM 4434 3372814 - 3372795 - R 90 -6.4 -5.71712 | opp_overlap 3372789 3372795 TTTTATACAAAAAAA GGATGAGA TAAA CCCCATCC TTTTTATTTAACATA TERM 4435 3372795 - 3372814 + r 70 -3.5 -5.28942 | opp_overlap 3372795, overlap 3372789 TTTTATACAAAAAAA GGATGAG ATAAAC CCCATCC TTTTTATTTAACATA CLL_A3229 3374648 - 3372846 - | surface protein PspC TERM 4436 3373790 - 3373813 + g 73 -4.6 -5.10497 | opp_overlap 3373792, overlap 3373792 TAGCTCCATCTATAT CATCAGAAGC TTGA GCTTTTGATA TTTTTTGAATAACTT TERM 4437 3373792 - 3373811 + g 75 -7.2 -4.17608 | opp_overlap 3373792, overlap 3373790 GCTCCATCTATATCA TCAGAAGC TTGA GCTTTTGA TATTTTTTGAATAAC TERM 4438 3373861 - 3373873 + g 77 -6.3 -4.79826 | TCTTTAGCAGTTACA TCAAC ATT GTTGA TTTTTGATACTGTAT TERM 4439 3375192 - 3375214 + r 79 -4.8 -5.53991 | opp_overlap 3375192 TTTTGCGCAAAAAAA TGCCATAAGC AAA GCTCATAGCA TTTTTTTAGTCACTG TERM 4440 3375214 - 3375192 - R 100 -9.2 -5.40072 | opp_overlap 3375192 TTTTGCGCAAAAAAA TGCCATAAGC AAA GCTCATAGCA TTTTTTTAGTCACTG CLL_A3230 3377452 - 3375251 - | collagenolytic protease TERM 4441 3377702 - 3377685 - R 73 -3.4 -5.60993 | opp_overlap 3377679 3377687 TTTTTCACAAAAAAA GCCATG AACAAA CATGAC TTTTTCCATTTTTTT CLL_A3231 3379424 - 3377745 - | choline binding protein A TERM 4442 3378659 - 3378679 + g 100 -8.5 -5.33848 | AATCTCTTCCACCTC TATATACAT TTA ATGTATATA TTTTTTCATTATCAT TERM 4443 3379772 - 3379740 - R 100 -9.3 -5.16237 | AATTCTATGAAAAAA TCCCTAATATAAGAT AAG AACTAATATTAGGGA TAAAAATATTATTTT CLL_A3232 3382131 - 3379843 - | surface protein PspA TERM 4444 3381456 - 3381475 + g 84 -9.4 -3.64184 | opp_overlap 3381459 3381470, overlap 3381459 3381470 CTTTGCTTAATTCTA TAAGTGGT ATAA ACCACTTA TTTAAAGTGCTATTT TERM 4445 3381459 - 3381472 + g 70 -6.7 -3.94634 | opp_overlap 3381459 3381470, overlap 3381456 3381470 TGCTTAATTCTATAA GTGGT ATAA ACCAC TTATTTAAAGTGCTA TERM 4446 3382563 - 3382592 + r 90 -12.3 -3.04322 | opp_overlap 3382564 3382568, overlap 3382568 TAAAATATAATATAA ATAAAGGACTTCC AAAA GGAAGTCCTTTAA TATTGAAAGCTTAAA TERM 4447 3382591 - 3382564 - R 100 -15.8 -4.3821 | opp_overlap 3382563 3382568, overlap 3382568 AAAATATAATATAAA TAAAGGACTTCC AAAA GGAAGTCCTTTA ATATTGAAAGCTTAA TERM 4448 3382587 - 3382568 - R 100 -12.2 -4.70921 | opp_overlap 3382568 3382563, overlap 3382564 TATAATATAAATAAA GGACTTCC AAAA GGAAGTCC TTTAATATTGAAAGC TERM 4449 3382568 - 3382587 + r 100 -12.2 -3.92324 | opp_overlap 3382564 3382568, overlap 3382563 TATAATATAAATAAA GGACTTCC AAAA GGAAGTCC TTTAATATTGAAAGC CLL_A3233 3384386 - 3382608 - | hypothetical protein TERM 4450 3386227 - 3386240 + G 76 -6.7 -4.51174 | TTAAATGAAGATTCT GATGG TTAT CCATC TTTTAGTTATGATGA CLL_A3234 3384982 - 3386331 + | hypothetical protein TERM 4451 3386370 - 3386339 - T 78 -6.6 -4.86385 | opp_overlap 3386335 3386339 ATCTTTAAAAATAAA TGACAGTTGCCAAA TCAT TTTGGTGACTGCCA TTAGTTTAGACTTTT TERM 4452 3386339 - 3386370 + T 79 -8.8 -3.56162 | opp_overlap 3386339, overlap 3386335 ATCTTTAAAAATAAA TGACAGTTGCCAAA TCAT TTTGGTGACTGCCA TTAGTTTAGACTTTT TERM 4453 3386509 - 3386535 + T 100 -12.5 -4.61231 | opp_overlap 3386509 TCCCATAAACAAAAA GCAGATAAGAT TTTGC ATCTTATCTGC TTTTTCCAAATCTCA TERM 4454 3386535 - 3386509 - T 100 -12.5 -5.38054 | opp_overlap 3386509 TCCCATAAACAAAAA GCAGATAAGAT TTTGC ATCTTATCTGC TTTTTCCAAATCTCA CLL_A3235 3388617 - 3386578 - | neutral endopeptidase CLL_A3236 3390178 - 3389003 - | hypothetical protein TERM 4455 3390338 - 3390313 - R 87 -7 -5.24531 | opp_overlap 3390313 ATTTTTTATAAAAAA CAGATAAGAC TTTTAT ATCTTATCTG TTATAGTGCTTGTCA CLL_A3237 3391246 - 3390398 - | glycosyl transferase, group 2 family protein TERM 4456 3391385 - 3391357 - R 75 -4 -5.55769 | TCTTAGAACAAAAAA CAGATAAGAT TTTCTATTC ATCTCATCTG TTCTATATATGTTAT CLL_A3238 3391828 - 3391493 - | hypothetical protein CLL_A3239 3392162 - 3391821 - | hypothetical protein CLL_A3240 3393317 - 3392166 - | putative carbamoyl-phosphate synthase large chain CLL_A3241 3394344 - 3393328 - | NDP-sugar dehydratase or epimerase CLL_A3242 3395276 - 3394347 - | glycosyltransferase CLL_A3243 3396414 - 3395293 - | lipopolysaccharide biosynthesis protein RffA TERM 4457 3395468 - 3395488 + g 78 -7 -4.57516 | opp_overlap 3395468 TGTAATGGTATATAA TGAAATAC TGTTT GTATTTCA TTTTGCTTTAAATAT CLL_A3244 3396953 - 3396468 - | hypothetical protein CLL_A3245 3398319 - 3396964 - | hypothetical protein CLL_A3246 3401651 - 3398331 - | WsaE TERM 4458 3400183 - 3400238 + g 78 -8.1 -3.92485 | gap 1, opp_overlap 3400183 3400185, overlap 3400196 ATTTTCCAACAAGTA GAGTTTAAAATTTGATTATAAC-TAT TCTCT ATATGTTGTAATCTATTTTTAAACTC TTCTCTTTGTAATAT CLL_A3247 3402871 - 3401651 - | O-antigen export system ATP-binding protein RfbB CLL_A3248 3404264 - 3402888 - | Wzm TERM 4459 3404150 - 3404166 + g 88 -6.7 -5.24796 | opp_overlap 3404144 TATCAGATATTATTT TATAACT CAA AGTTATA TTTTTATTGTCTAAG rfbD 3405114 - 3404272 - | dTDP-4-dehydrorhamnose reductase CLL_A3250 3406095 - 3405127 - | WsbC TERM 4460 3406017 - 3406062 + g 84 -10.7 -2.65264 | gap 1, opp_overlap 3406017 3406020, overlap 3406032 GACTATTTAATGAAA TGAGCTGTTCTATAAGCCAGTT TTC ATTTGGCTTATAG-ACAGCTAA TAATATAGATACTAA TERM 4461 3406062 - 3406017 - G 80 -8.6 -3.94002 | gap 1, opp_overlap 3406017 3406032, overlap 3406020 GACTATTTAATGAAA TGAGCTGTTCTATAAGCCA GTTTTCATT TGGCTTATAG-ACAGCTAA TAATATAGATACTAA TERM 4462 3406059 - 3406020 - G 84 -10.3 -3.02881 | gap 1, opp_overlap 3406017 3406032, overlap 3406017 TATTTAATGAAATGA GCTGTTCTATAAGCCA GTTTTCATT TGGCTTATAG-ACAGC TAATAATATAGATAC rfbB 3407101 - 3406082 - | dTDP-glucose 4,6-dehydratase rfbC 3407757 - 3407218 - | dTDP-4-dehydrorhamnose 3,5-epimerase TERM 4463 3407261 - 3407281 + g 75 -3.3 -5.45652 | AGTGGTGCTTTTTTA TCTTTTTCT GAA AGAATAGGA TTTTTTATTCCCCAT rfbA 3408680 - 3407802 - | glucose-1-phosphate thymidylyltransferase TERM 4464 3408778 - 3408752 - H 95 -11.2 -3.65828 | opp_overlap 3408756 3408760, overlap 3408756 3408760 ACATAAAGGGCCAAA TAAATAAATGTA GTT TACATTTATTTA CGGTTGTTATACATT TERM 4465 3408774 - 3408756 - H 81 -7.6 -4.4448 | opp_overlap 3408756 3408760, overlap 3408752 3408760 AAAGGGCCAAATAAA TAAATGTA GTT TACATTTA TTTACGGTTGTTATA TERM 4466 3408756 - 3408774 + H 73 -7.6 -3.73122 | opp_overlap 3408756 3408752 3408760, overlap 3408760 AAAGGGCCAAATAAA TAAATGTA GTT TACATTTA TTTACGGTTGTTATA CLL_A3254 3408947 - 3410386 + | undecaprenyl-phosphate glucose phosphotransferase TERM 4467 3410385 - 3410439 + F 100 -17.6 -3.71998 | opp_overlap 3410390, overlap 3410390 ATAATATAAATATAT AAAAATAAGCATGTTCTACACAAATA ACT TAATTGTGCAGAACATGCTTATTTTA TTATCTTACTACATA TERM 4468 3410390 - 3410434 + F 100 -17.5 -4.91285 | opp_overlap 3410390, overlap 3410385 ATAAATATATAAAAA TAAGCATGTTCTACACAAATA ACT TAATTGTGCAGAACATGCTTA TTTTATTATCTTACT TERM 4469 3410434 - 3410390 - f 100 -19.7 -5.1634 | opp_overlap 3410390 3410385 ATAAATATATAAAAA TAAGCATGTTCTACACAAATA ACT TAATTGTGCAGAACATGCTTA TTTTATTATCTTACT TERM 4470 3411794 - 3411812 + G 70 -5.2 -4.57569 | GCTATTGGAGGTAAT GTTGCTAC TAA GGGGCAAC TTTTTCAAAGAGTAC TERM 4471 3412251 - 3412236 - g 71 -7.6 -3.61774 | overlap 3412229 TAGAATATCCTGAAA CCTTTG GATT CAAAGG AAAAGAAAAGATTGG CLL_A3255 3410873 - 3412708 + | O-antigen polymerase family TERM 4472 3412771 - 3412745 - T 82 -4.5 -5.80951 | gap 1, opp_overlap 3412745 ACTTAAAATAAAAAA TCCAGAGTTATC ATTT GATT-CTCTGGA TTTTTACTCTTCACT CLL_A3256 3412984 - 3412775 - | hypothetical protein TERM 4473 3413109 - 3413085 - R 95 -11.5 -3.67517 | overlap 3413088 CATCAACACTCTAAA CAAGCTGGTCA CAG TCACCAGCTTG GACAAAAAAGGTACT TERM 4474 3413106 - 3413088 - R 71 -7.4 -3.96449 | overlap 3413085 CAACACTCTAAACAA GCTGGTCA CAG TCACCAGC TTGGACAAAAAAGGT TERM 4475 3413119 - 3413141 + r 91 -13.5 -2.74038 | opp_overlap 3413119, overlap 3413116 AGCTTGGACAAAAAA GGTACTCCC ATATG GGGAGTACC TAATATATATAATCT TERM 4476 3413141 - 3413119 - R 100 -13.5 -5.24531 | opp_overlap 3413119 3413116 AGCTTGGACAAAAAA GGTACTCCC ATATG GGGAGTACC TAATATATATAATCT CLL_A3257 3414967 - 3413183 - | hypothetical protein TERM 4477 3415274 - 3415243 - R 100 -9.8 -5.17507 | gap 1, opp_overlap 3415237 3415243, overlap 3415234 AAAATGTAATAAAAA TACTTGGTATATTTA TTG TAAA-ATACCAAGTA TTTAGAACTTATTTA TERM 4478 3415243 - 3415274 + r 89 -9.8 -3.6512 | gap 1, opp_overlap 3415234 3415243, overlap 3415237 AAAATGTAATAAAAA TACTTGGTATATTTA TTG TAAA-ATACCAAGTA TTTAGAACTTATTTA CLL_A3258 3418008 - 3415687 - | cell wall binding repeat domain protein TERM 4479 3417048 - 3417065 + g 75 -5.6 -4.64766 | opp_overlap 3417047 CACCTTTAACTATAT CAACTG CTGCTC CAGTTG TTTTTACACTCTCAA TERM 4480 3417305 - 3417315 + g 88 -5.4 -5.64274 | TGATTTGAAACTTTT GCAT TTA ATGC TTTTTTTATACCTGC TERM 4481 3418996 - 3418976 - H 76 -4.2 -5.29716 | TTAAGATAAGAAAAA TAAATAAA TTGTT TTTATTTA CACTATACATTACAA TERM 4482 3419267 - 3419285 + H 83 -4 -5.85011 | opp_overlap 3419261 CTTTATAAATAAAAA TATATGTT TAA AATATATA TTTTTTTAATTTTTA TERM 4483 3419400 - 3419423 + H 70 -2.6 -5.46629 | overlap 3419401 3419404 CTTATTTTAATTTCT TTAATATATT TTTT AATATATTAC TTTTTTTAAAATATT CLL_A3259 3419455 - 3419706 + | hypothetical protein TERM 4484 3419729 - 3419764 + T 100 -16.5 -5.46657 | opp_overlap 3419729 CTCCCGAGAAAAAAA CAGAGTACTTAATGA CACACA TCATTAAGTACTCTG TTTTTTATTAGACTA TERM 4485 3419764 - 3419729 - T 100 -17.2 -5.60993 | opp_overlap 3419729 CTCCCGAGAAAAAAA CAGAGTACTTAATGAC ACAC ATCATTAAGTACTCTG TTTTTTATTAGACTA CLL_A3260 3421960 - 3419858 - | surface protein PspC TERM 4486 3422269 - 3422240 - R 79 -8.7 -3.73534 | opp_overlap 3422247 3422268, overlap 3422247 TAACTTTACTAATAA CAAAAAACGTGGC TGAT ACCACGTTTTTTT AATTTAATTTAATAT TERM 4487 3422262 - 3422247 - R 90 -6.8 -5.66229 | opp_overlap 3422247, overlap 3422240 ACTAATAACAAAAAA CGTGGC TGAT ACCACG TTTTTTTAATTTAAT TERM 4488 3422247 - 3422262 + r 87 -6.1 -5.73563 | opp_overlap 3422247 3422240 ACTAATAACAAAAAA CGTGG CTGATA CCACG TTTTTTTAATTTAAT CLL_A3261 3423177 - 3422332 - | putative hexulose-6-phosphate isomerase CLL_A3262 3424062 - 3423373 - | L-ribulose-5-phosphate 4-epimerase UlaF CLL_A3263 3425398 - 3424361 - | hypothetical protein TERM 4489 3424519 - 3424534 + g 72 -4.8 -4.9934 | CTTTATCTTCACATT GAATTA CAAA TAATTC TTTTTCTACTCTTCT CLL_A3264 3425830 - 3425537 - | PTS system enzyme IIB component CLL_A3265 3427480 - 3426023 - | ascorbate-specific PTS system enzyme IIC CLL_A3266 3428018 - 3427575 - | phosphotransferase system mannitol/fructose-specific IIA domain TERM 4490 3428109 - 3428140 + r 100 -13.2 -4.26189 | opp_overlap 3428109, overlap 3428111 TTTTATATCTTTAAA TTTCAGATAAGGGT TATT ACCCTTATCTGATA TTTTAAAATTTCTAA TERM 4491 3428140 - 3428109 - R 100 -13.2 -3.59262 | opp_overlap 3428109 3428111 TTTTATATCTTTAAA TTTCAGATAAGGGT TATT ACCCTTATCTGATA TTTTAAAATTTCTAA TERM 4492 3428111 - 3428138 + r 100 -15.8 -3.72407 | opp_overlap 3428109, overlap 3428109 TTATATCTTTAAATT TCAGATAAGGGT TATT ACCCTTATCTGA TATTTTAAAATTTCT CLL_A3267 3429249 - 3428185 - | metal-dependent hydrolase TERM 4493 3429281 - 3429293 + H 75 -4.1 -5.62552 | TATACTATATTTTAT GTTCA TTG TGAGC TTTTTTAATTTTTTT TERM 4494 3429622 - 3429602 - g 73 -5.5 -4.6709 | TAAAAGGAGAGAAAA GATTTTAGA TTA TCTTAAATC AAATGAAAGTATAAA TERM 4495 3429974 - 3429935 - g 76 -8.9 -3.05579 | overlap 3429930 3429937 3429939 CAATAAAAGAGTATA TATAGTAACTAATAATG GTAAGG CATTACAAGTTACTATA CCTCCAAATGTTGAA CLL_A3268 3429561 - 3430352 + | transcriptional regulator, DeoR family TERM 4496 3430436 - 3430397 - T 100 -11 -5.36441 | opp_overlap 3430400 3430406 TTTGTATACAAAAAA GAAGCTGCTTATTATGAA TATT CTTATAATAAACAGCTTC TAAAAATTATAACTT CLL_A3269 3431768 - 3430479 - | probable M18-family aminopeptidase 2 TERM 4497 3433245 - 3433273 + G 86 -9.1 -4.11216 | overlap 3433246 3433248 AACTTAATTTTTGAT TTAGTTTTAAATG ATT CATTTAAAACTAC TTTTAAAGATCACGA TERM 4498 3433246 - 3433272 + G 100 -12.6 -3.06515 | overlap 3433245 3433248 ACTTAATTTTTGATT TAGTTTTAAATG ATT CATTTAAAACTA CTTTTAAAGATCACG TERM 4499 3433248 - 3433270 + G 88 -10.8 -3.09004 | overlap 3433246 3433245 TTAATTTTTGATTTA GTTTTAAATG ATT CATTTAAAAC TACTTTTAAAGATCA CLL_A3270 3432198 - 3433373 + | cation efflux family protein TERM 4500 3433399 - 3433439 + F 100 -12.9 -5.06735 | opp_overlap 3433399 TATTAATGTGTAAAA TATACCTCCTATAAAGCAT AGA ATACTTTATAGTAGGTATA TTTTTATGCTTTCTA TERM 4501 3433439 - 3433399 - f 100 -15.1 -4.15106 | opp_overlap 3433399 TATTAATGTGTAAAA TATACCTCCTATAAAGCAT AGA ATACTTTATAGTAGGTATA TTTTTATGCTTTCTA CLL_A3271 3433523 - 3433846 + | hypothetical protein TERM 4502 3433943 - 3433920 - T 72 -6.2 -4.51777 | gap 1, opp_overlap 3433920 AGATTATAATTAAAA GTATTTGTTGA TAA TCA-CAAATAC TTTCTAGCTAATTAT CLL_A3272 3435858 - 3434227 - | putative acetolactate synthase large subunit CLL_A3273 3436312 - 3435845 - | hypothetical protein TERM 4503 3436685 - 3436645 - R 78 -8.3 -3.86658 | opp_overlap 3436645, overlap 3436638 CTATAAAACAGAGAA GGGATTTCTCATATTGCAT TTT ATGCATTACGAGACGCCCC TTTACTTATATATTC TERM 4504 3436771 - 3436791 + r 71 -7.1 -3.98661 | GTATAATCTACTTGT TATATTTAA AAC TTAAATATA TTTCTAATGAATATA CLL_A3274 3437188 - 3436817 - | hypothetical protein TERM 4505 3437261 - 3437286 + r 73 -7.1 -4.13225 | opp_overlap 3437261 3437254, overlap 3437263 AGTTATAATATAAAG TGTAGTATATT TAAT AATATACTATA TTTATACATTTTTTT TERM 4506 3437263 - 3437284 + r 72 -7.5 -3.62505 | opp_overlap 3437261 3437254, overlap 3437261 TTATAATATAAAGTG TAGTATATT TAAT AATATACTA TATTTATACATTTTT CLL_A3275 3437756 - 3437385 - | hypothetical protein CLL_A3276 3438181 - 3438831 + | hypothetical protein CLL_A3277 3440462 - 3438996 - | methyl-accepting chemotaxis protein TERM 4507 3440739 - 3440698 - R 86 -7.6 -4.91046 | opp_overlap 3440698 TATAAAACAAAGAAA GCTAATAAATAACAAGGA TTTTTC TACTTATCATTTATTAGC TATATTTATAATTAT TERM 4508 3440786 - 3440808 + r 83 -8 -4.65584 | opp_overlap 3440791 3440793, overlap 3440793 TTTTTTCTATTCTCT TAATATATAA AGT TTATATATTA TTTTATATACTTTAT CLL_A3278 3441567 - 3440845 - | glutamine transport ATP-binding protein GlnQ CLL_A3279 3442213 - 3441554 - | amino acid ABC transporter, amino acid-binding/permease protein CLL_A3280 3443134 - 3442298 - | amino acid ABC transporter TERM 4509 3443360 - 3443321 - R 75 -3.8 -5.50774 | opp_overlap 3443322 3443325 3443327 3443357, overlap 3443325 GATAATAAACAAAAA TAAAGAGATATAAATTAA TATT TTAATCTATATCTCTACT TTCCAAGTATATATC TERM 4510 3443325 - 3443356 + r 73 -9 -2.92171 | opp_overlap 3443325 3443321, overlap 3443322 3443327 ATAAACAAAAATAAA GAGATATAAATTAA TATT TTAATCTATATCTC TACTTTCCAAGTATA TERM 4511 3443356 - 3443325 - R 100 -11.2 -5.1502 | opp_overlap 3443322 3443325 3443327, overlap 3443321 ATAAACAAAAATAAA GAGATATAAATTAA TATT TTAATCTATATCTC TACTTTCCAAGTATA TERM 4512 3443502 - 3443472 - R 95 -10.6 -4.35742 | opp_overlap 3443470 3443469 3443472 ATCTAAGTATTAAAA TAGCAGCTACCA TATCTAT TGATAGCTGCTA TAATTTATTAATGTC TERM 4513 3443472 - 3443502 + r 72 -8.4 -3.14013 | opp_overlap 3443472, overlap 3443470 3443469 ATCTAAGTATTAAAA TAGCAGCTACCA TATCTAT TGATAGCTGCTA TAATTTATTAATGTC CLL_A3281 3445629 - 3443518 - | ATP-dependent DNA helicase rep TERM 4514 3445893 - 3445842 - R 76 -8.5 -3.67634 | gap 1, opp_overlap 3445868, overlap 3445840 3445845 CACTATTTGAAAACA TAAGGTTCAGAT-AATCTAACTTA TTTTT TAAGCTAAATTAATCCAAACCTTA CTATTTAAACCCTAG CLL_A3282 3448087 - 3446003 - | putative Cell division protease FtsH homolog TERM 4515 3447739 - 3447760 + g 72 -5.9 -4.5366 | opp_overlap 3447739 3447744 AAATCCAGCTAAGTA CAAAATCCA TAAT TGGACTTTG TTTTGGATTTTTTCC TERM 4516 3448054 - 3448035 - G 88 -6.6 -5.25656 | opp_overlap 3448035 3448039 AAAACTAGTAAAAAA TATATTAC CATT GTAATATA TCCGTTTTTCTTCTT CLL_A3283 3448350 - 3448132 - | hypothetical protein lepB 3449011 - 3448484 - | signal peptidase I lepB 3449596 - 3449078 - | signal peptidase I TERM 4517 3449807 - 3449773 - R 100 -7.5 -5.4833 | gap 1 TTACGCAACAAAAAA TGTGTATCAAAATTAA TAAA TCAATTT-GATACACA CTAAGATATATATAT lysA 3451168 - 3449873 - | diaminopimelate decarboxylase TERM 4518 3451224 - 3451203 - R 100 -9.5 -5.26119 | opp_overlap 3451222 TGTTTAAAAACAAAA GTCACAGAT ATTA ATCTGCGAC TGGTAGAGTCTACTT CLL_A3287 3451601 - 3451488 - | hypothetical protein CLL_A3288 3452530 - 3451856 - | dihydrodipicolinate synthase/N-acetylneuraminate lyase CLL_A3289 3452799 - 3452626 - | hypothetical protein TERM 4519 3453293 - 3453245 - R 77 -6.4 -4.63486 | gap 1, opp_overlap 3453232 3453247, overlap 3453232 3453247 ATTTCTGTAATAAAA TATTCCTGAATATCATATTAAAT TTTA ATTAAACATGATAT-CAGGAATT CTAATCAATATTTAT TERM 4520 3453291 - 3453247 - R 81 -9 -3.93367 | gap 1, opp_overlap 3453232 3453247, overlap 3453232 3453245 TTCTGTAATAAAATA TTCCTGAATATCATATTAAAT TTTA ATTAAACATGATAT-CAGGAA TTCTAATCAATATTT CLL_A3290 3454120 - 3453359 - | probable N-acetylmuramoyl-L-alanine amidase TERM 4521 3453409 - 3453422 + g 70 -5.3 -4.4648 | TTGCTTGTTTTACAT TTTCC ATTG GGAAA TTTTCTCCTGGGCAT TERM 4522 3454270 - 3454316 + r 100 -15.1 -4.63526 | gap 1, opp_overlap 3454270 AATTTAAAATAAAAA TATGGATAAGTATTTTAAT-AT AATA ATGATTAAAATACTTATCCATA TTTATTTATACTTCT TERM 4523 3454316 - 3454270 - R 100 -15.1 -5.49568 | gap 1, opp_overlap 3454270 AATTTAAAATAAAAA TATGGATAAGTATTTTAAT-AT AATA ATGATTAAAATACTTATCCATA TTTATTTATACTTCT CLL_A3291 3455591 - 3454347 - | membrane associated chemotaxis sensory transducer protein TERM 4524 3455123 - 3455139 + g 73 -8.1 -3.4214 | overlap 3455126 ATGCAGATAATTCTT CAATAGT GCT ACTATTG TCTTCTATTCCACTT CLL_A3292 3455830 - 3457014 + | aspartate aminotransferase TERM 4525 3457044 - 3457019 - T 100 -12 -5.76237 | opp_overlap 3457019 TATATAAATAAAAAA GGTGATTGTC TTTAAT GACAATCACC TTTTTTTAGAATAAT TERM 4526 3457019 - 3457044 + T 100 -12 -5.44721 | opp_overlap 3457019 TATATAAATAAAAAA GGTGATTGTC TTTAAT GACAATCACC TTTTTTTAGAATAAT CLL_A3293 3461840 - 3457050 - | von Willebrand factor type A domain protein TERM 4527 3458037 - 3458052 + g 79 -3.3 -5.73978 | ATCTTGAATTTTACT TGATG CATAGT CATCA TTTTTTCTTTCTAAT TERM 4528 3460196 - 3460207 + g 72 -5.8 -4.48987 | opp_overlap 3460195 3460196 CTATTACATCATAAC CCCA TTTT TGGG TTTTAGTTATGCCAG TERM 4529 3461928 - 3461940 + r 84 -4.9 -5.66868 | opp_overlap 3461928 CAGGTTTAATTTAAA TTCTA ATA TAGAA TTTTTTTCATTCATT CLL_A3294 3462515 - 3461976 - | prepilin-type N- cleavage/methylation domain protein CLL_A3295 3464898 - 3462541 - | hypothetical protein TERM 4530 3462699 - 3462684 - G 74 -4 -5.35459 | ATACAGCACAAAAAA GTTCCT CATT AGAAAC TTTAATTCTGTCACA TERM 4531 3464285 - 3464301 + g 78 -8.1 -3.89822 | overlap 3464288 GGTTTATTTGCTTGT GAAGTTA AAC TAACTTC TTTATAAGATAAATC CLL_A3296 3465914 - 3464895 - | prokaryotic N- methylation motif domain protein CLL_A3297 3467196 - 3465925 - | hypothetical protein CLL_A3298 3467756 - 3467193 - | fimbrial assembly protein PilN CLL_A3299 3468937 - 3467771 - | type IV pilus assembly protein PilM TERM 4532 3469173 - 3469146 - R 100 -12.2 -3.88766 | opp_overlap 3469135 3469146 ATTTTATAGAGTAAA GTGTAAAGCCTA AAAT TAAGCTTTACAC TTTGATATAAATTTA TERM 4533 3469146 - 3469173 + r 93 -10 -3.87354 | opp_overlap 3469146, overlap 3469135 ATTTTATAGAGTAAA GTGTAAAGCCTA AAAT TAAGCTTTACAC TTTGATATAAATTTA CLL_A3300 3469621 - 3469205 - | putative type IV pilin TERM 4534 3469424 - 3469436 + g 77 -6.3 -4.71061 | TATTAATGTAGCTGC TATGC TAT GCATA TTTTTAGCTGTAGCT CLL_A3301 3471134 - 3469932 - | bacterial type II secretion system protein F TERM 4535 3470466 - 3470425 - G 70 -7.7 -3.33696 | gap 1, overlap 3470427 TCTGTTTTTAAGTAA TATTTTA-TTGCAATAGTAA TTC CTACTATTGCAAGTAAAATC ATAAACCAATGTGCT TERM 4536 3470464 - 3470427 - G 86 -10.3 -3.23853 | gap 1, overlap 3470425 TGTTTTTAAGTAATA TTTTA-TTGCAATAGTAA TTC CTACTATTGCAAGTAAAA TCATAAACCAATGTG TERM 4537 3471072 - 3471088 + g 80 -5.2 -5.28176 | TCCTTTAGAATCAGC TTCATG ATTTC CATGAA TTTTTTCTCCATCCA CLL_A3302 3472930 - 3471242 - | type IV pilus assembly protein TapB CLL_A3303 3473749 - 3472991 - | leader peptidase TERM 4538 3473977 - 3473941 - R 100 -21.3 -6.01369 | opp_overlap 3473951 TAAATAATAAAAAAA GGCCAACAAATTAATTA ATT TAATTAATTTGTTGGCC GGGTGCACCACTGAC TERM 4539 3474052 - 3474086 + r 73 -4.6 -5.19212 | opp_overlap 3474064, overlap 3474043 TCCAACTTTATATTA TAAATGTAATAATATA AAT TATATTGTAATATTTA TTTTTTCATGATAAT TERM 4540 3474189 - 3474147 - R 100 -14.6 -5.61596 | opp_overlap 3474147 3474150 3474187, overlap 3474186 3474187 ATTTTTATAAAAAAA TAAGCCAATTTAAATTGGTA AAT TACCAATTTAAATCAACTTA TTTAATCTACTAAAT TERM 4541 3474147 - 3474189 + r 75 -8 -3.8647 | opp_overlap 3474147 3474186 3474187, overlap 3474150 3474187 ATTTTTATAAAAAAA TAAGCCAATTTAAATTGGTA AAT TACCAATTTAAATCAACTTA TTTAATCTACTAAAT CLL_A3304 3475220 - 3474261 - | putative lipoprotein TERM 4542 3474455 - 3474487 + g 83 -10.1 -3.28984 | opp_overlap 3474455, overlap 3474444 TTTCTGATTTATAAT CATTATCTGTGAAAG TTT CTTTTGTAGATAATG TTGATCCTTCAATTA CLL_A3305 3476199 - 3475552 - | hypothetical protein CLL_A3306 3477059 - 3476199 - | ABC transporter domain protein CLL_A3307 3477436 - 3477059 - | GntR-family transcriptional regulator TERM 4543 3477496 - 3477455 - R 89 -9.8 -3.53343 | opp_overlap 3477455 3477458, overlap 3477460 AATTTCCTCCTTAAA GTATATATACTGTATATA TTCTAT TATATACAGTATAAACAC TATAGTCAATATTTA TERM 4544 3477491 - 3477460 - R 85 -10.5 -3.00525 | opp_overlap 3477458 3477455, overlap 3477455 CCTCCTTAAAGTATA TATACTGTATATA TTCTAT TATATACAGTATA AACACTATAGTCAAT TERM 4545 3477548 - 3477523 - R 91 -4.9 -6.15828 | TTTATCAAAAAAAAA TAAACCTTA TTATAACT TAAGGTTTA TTCCAAAATTAAAAA CLL_A3308 3478055 - 3477813 - | hypothetical protein TERM 4546 3478115 - 3478142 + H 89 -8.7 -4.69622 | opp_overlap 3478119, overlap 3478119 AATTTATTGTATTCA TAAACTTAAAC AATATA GTTTAAGTTTA TTTTTAAAGTTCTAT TERM 4547 3478119 - 3478138 + H 70 -5.1 -4.88293 | opp_overlap 3478119, overlap 3478115 TATTGTATTCATAAA CTTAAAC AATATA GTTTAAG TTTATTTTTAAAGTT CLL_A3309 3478454 - 3480334 + | methyl-accepting chemotaxis protein TERM 4548 3480532 - 3480559 + T 75 -9.3 -2.53112 | opp_overlap 3480532, overlap 3480531 TTATATTAGGAACAA GCTAAAATGGG ACTGTA CTCATTTTAGC ATTCCTAAGTTCAAT TERM 4549 3480559 - 3480532 - T 70 -7.1 -3.76482 | opp_overlap 3480532 3480531 TTATATTAGGAACAA GCTAAAATGGG ACTGTA CTCATTTTAGC ATTCCTAAGTTCAAT CLL_A3310 3480868 - 3480665 - | hypothetical protein CLL_A3311 3483492 - 3481063 - | copper-translocating P-type ATPase TERM 4550 3481749 - 3481765 + g 70 -2.3 -5.54894 | overlap 3481751 CTTTCATTAATTTCT TATTTCC CAG GAAAATA TTTTTTTCGTCAATT CLL_A3312 3483890 - 3483624 - | hypothetical protein TERM 4551 3483905 - 3483919 + r 72 -8.5 -3.28033 | opp_overlap 3483897, overlap 3483903 3483901 3483890 TACTTAATCCTCCCA CCCCC GTGGA GGGGG TATGTATTTGTATTT TERM 4552 3484226 - 3484189 - R 100 -15.3 -6.04324 | opp_overlap 3484189 TTAAAAAATAAAAAA TACCTTAATAAACTTAG TATT CTAAATTTATTAAGGTA TTATTCTTATAACTT TERM 4553 3484189 - 3484226 + r 100 -13.1 -4.04491 | opp_overlap 3484189 TTAAAAAATAAAAAA TACCTTAATAAACTTAG TATT CTAAATTTATTAAGGTA TTATTCTTATAACTT CLL_A3313 3485420 - 3484242 - | thermostable carboxypeptidase 1 CLL_A3314 3485580 - 3486032 + | putative peroxiredoxin bcp TERM 4554 3486109 - 3486140 + T 100 -8.9 -5.38047 | opp_overlap 3486101 3486111, overlap 3486111 CAAATACTAATTTTA AATTATAGCTGAC TTTATT GTCAGCTATAATA TTTTTTATATAAATC TERM 4555 3486138 - 3486111 - T 95 -11.5 -3.69092 | opp_overlap 3486109 3486111, overlap 3486101 AATACTAATTTTAAA TTATAGCTGAC TTTATT GTCAGCTATAA TATTTTTTATATAAA TERM 4556 3486111 - 3486138 + T 100 -11.5 -4.31943 | opp_overlap 3486101 3486111, overlap 3486109 AATACTAATTTTAAA TTATAGCTGAC TTTATT GTCAGCTATAA TATTTTTTATATAAA CLL_A3315 3486908 - 3486129 - | nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase TERM 4557 3486221 - 3486233 + g 70 -6.3 -4.16305 | GCTCTAATTTAATTT CTTGT ATT ACAAG TTCTTCTTTATCACT CLL_A3316 3488639 - 3487146 - | lipase CLL_A3317 3490071 - 3488734 - | putative lipase TERM 4558 3488896 - 3488914 + g 70 -6 -4.3208 | AACTATTACATCATC TGATCCTA ATT TAGGACCA TTTTCACTTATACAA TERM 4559 3491177 - 3491232 + r 73 -5.8 -4.90296 | gap 1, opp_overlap 3491180 3491182 3491187, overlap 3491182 3491187 ATGTTCTTAATGCTA AAATATCAAAGGTACACTATTTCCTCT TAT ATAGAAAATAGTGTACCTTTTA-ATTA TTTTTGTGCAATTTT TERM 4560 3491229 - 3491180 - R 86 -9.7 -4.19238 | gap 1, opp_overlap 3491177 3491182 3491187, overlap 3491182 3491187 TTCTTAATGCTAAAA TATCAAAGGTACACTATTTCCTCT TAT ATAGAAAATAGTGTACCTTTTA-A TTATTTTTGTGCAAT TERM 4561 3491182 - 3491228 + r 95 -12.6 -3.31001 | opp_overlap 3491180 3491182 3491187, overlap 3491177 3491187 CTTAATGCTAAAATA TCAAAGGTACACTATTTCCTCT TAT ATAGAAAATAGTGTACCTTTTA ATTATTTTTGTGCAA TERM 4562 3491228 - 3491182 - R 100 -14.8 -3.69618 | opp_overlap 3491182 3491177 3491187, overlap 3491180 3491187 CTTAATGCTAAAATA TCAAAGGTACACTATTTCCTCT TAT ATAGAAAATAGTGTACCTTTTA ATTATTTTTGTGCAA TERM 4563 3491223 - 3491187 - R 100 -14.7 -4.07678 | opp_overlap 3491187 3491182 3491177, overlap 3491182 3491180 TGCTAAAATATCAAA GGTACACTATTTCCTCT TAT ATAGAAAATAGTGTACC TTTTAATTATTTTTG TERM 4564 3491187 - 3491223 + r 100 -12.5 -4.70739 | opp_overlap 3491182 3491180 3491187, overlap 3491182 3491177 TGCTAAAATATCAAA GGTACACTATTTCCTCT TAT ATAGAAAATAGTGTACC TTTTAATTATTTTTG CLL_A3318 3492222 - 3491314 - | cysteine synthase family protein TERM 4565 3491891 - 3491901 + g 78 -8.2 -3.92625 | GTATTTACTATTTCT GCCC CAA GGGC TTTCATTAACGTCTG luxS 3492658 - 3492206 - | S-ribosylhomocysteinase LuxS CLL_A3320 3493802 - 3492651 - | cystathionine gamma-lyase CLL_A3321 3494446 - 3493820 - | SAM-dependent methyltransferase TERM 4566 3494679 - 3494657 - R 87 -4.1 -6.28967 | opp_overlap 3494659, overlap 3494658 3494659 TATAAACAAAAAAAA CCCTACCTC ATTTA GAGGCAGAA TTTTTATTCCGCGGT TERM 4567 3495119 - 3495083 - R 100 -13.3 -3.90684 | opp_overlap 3495083, overlap 3495075 AACCAAATCATCAAA GGTACAATATTTCCTCT TAT ATAGAAAATATTGTACC TTTTCATTATCTCTA TERM 4568 3495083 - 3495119 + r 100 -11.1 -4.5464 | opp_overlap 3495083 3495075 AACCAAATCATCAAA GGTACAATATTTCCTCT TAT ATAGAAAATATTGTACC TTTTCATTATCTCTA CLL_A3322 3496081 - 3495287 - | RNA pseudouridine synthase family protein CLL_A3323 3496368 - 3496162 - | transcription regulator, Cro/CI family -related protein CLL_A3324 3496881 - 3496387 - | hypothetical protein CLL_A3325 3497262 - 3497038 - | putative lipoprotein TERM 4569 3497607 - 3497583 - R 81 -7.3 -4.84527 | opp_overlap 3497583 3497579 TCCATATACCAAAAA GGATAGTAA AATCAAA TTACTATCC TTAATTACTTTACAT CLL_A3326 3498524 - 3497706 - | medium FAD-binding subunit of molybdenum enzyme TERM 4570 3498267 - 3498283 + g 70 -8.1 -3.01918 | opp_overlap 3498264 3498263, overlap 3498264 AGGAGCAGCAATTTT TGAAACA GCT TGTTTCA TAATTTCTGGAATAA CLL_A3327 3498994 - 3498518 - | putative xanthine dehydrogenase, iron-sulfur binding subunit CLL_A3328 3501125 - 3498996 - | putative xanthine dehydrogenase, molybdenum-binding subunit TERM 4571 3501200 - 3501235 + r 75 -8.5 -3.55824 | opp_overlap 3501200, overlap 3501198 ATTGCAACAAAAAAA TAGCATCAAATTCTT CTTCAA AAGAACTTGGTGCTA TCTTTCTAAATACTA TERM 4572 3501235 - 3501200 - R 100 -9.2 -5.80364 | opp_overlap 3501200 3501198 ATTGCAACAAAAAAA TAGCATCAAATTCTTC TTCA AAAGAACTTGGTGCTA TCTTTCTAAATACTA CLL_A3329 3502174 - 3501248 - | transcriptional regulator, LysR family protein TERM 4573 3502372 - 3502333 - R 75 -6.7 -4.44974 | overlap 3502339 CTAAAGTGTATAAAA CAAAAATCCCAACTAGA TAAATT TCTAATTAGGATTTCTA TTACTGCATTTAATG TERM 4574 3502366 - 3502339 - R 82 -5.7 -5.54907 | overlap 3502333 TGTATAAAACAAAAA TCCCAACTAGA TAAATT TCTAATTAGGA TTTCTATTACTGCAT rumA 3503756 - 3502389 - | 23S rRNA (uracil-5-)-methyltransferase RumA CLL_A3331 3504317 - 3503961 - | hypothetical protein TERM 4575 3504455 - 3504438 - R 88 -6.9 -5.53079 | overlap 3504439 AAAAGACATAAAAAA GGCACCC CTAA GGGTGCA AATAGAGAATTAATT TERM 4576 3504454 - 3504439 - R 95 -10.4 -3.88187 | overlap 3504438 AAAGACATAAAAAAG GCACCC CTAA GGGTGC AAATAGAGAATTAAT CLL_A3332 3505106 - 3504978 - | hypothetical protein xylB 3506613 - 3505141 - | xylulokinase CLL_A3334 3507854 - 3506799 - | sorbitol dehydrogenase TERM 4577 3507872 - 3507910 + r 71 -5.7 -4.57514 | gap 1, opp_overlap 3507879, overlap 3507905 CATTTCCCCCTTTTC CACATAATAAAA-TACTT TTTA AAATACTTTTATTATGTG TTTATATTTTATTAT TERM 4578 3508063 - 3508042 - R 89 -4.4 -6.02914 | opp_overlap 3508042 TGGATATAAAAAAAA GAGTTCTC TATTAC GAGACCTC TCTTTGACCATATTT CLL_A3335 3509211 - 3508084 - | ROK family protein TERM 4579 3508773 - 3508787 + g 71 -7.2 -3.83324 | opp_overlap 3508772 CAGGAAAAGAAATTC CAATTC CAA GAATTG TTTCCCTGTTTCTAA TERM 4580 3509648 - 3509631 - R 93 -6.9 -5.82281 | overlap 3509632 AAAGACATAAAAAAA GGCACCC CTAA GGGTGCA AATAGAGAATCAGTT TERM 4581 3509647 - 3509632 - R 95 -10.4 -4.05708 | overlap 3509631 AAGACATAAAAAAAG GCACCC CTAA GGGTGC AAATAGAGAATCAGT TERM 4582 3509823 - 3509844 + r 86 -4.4 -5.88565 | opp_overlap 3509823 AAAAAGAATAAAAAA GCTCTCGA ATAAAA TCGAAAGC TTTTTTTATTATAAG TERM 4583 3509844 - 3509823 - R 90 -6.6 -5.80727 | opp_overlap 3509823 AAAAAGAATAAAAAA GCTCTCGA ATAAAA TCGAAAGC TTTTTTTATTATAAG pyk 3511279 - 3509864 - | pyruvate kinase pfkA 3512301 - 3511339 - | 6-phosphofructokinase CLL_A3338 3516291 - 3512680 - | DNA polymerase III subunit alpha TERM 4584 3512816 - 3512826 + g 72 -6.8 -4.14615 | opp_overlap 3512814 3512810 3512816 GCAAAAATATAGATA GGTG TAT CACC TTTATAATCTTTTAT TERM 4585 3516732 - 3516702 - R 100 -15.6 -4.21945 | opp_overlap 3516702 ACTAAGATAGAGAAA GCTACGTTAGATCC AAA GCATCTAACGTAGC TTTTATTAAATTCAT TERM 4586 3516702 - 3516732 + r 100 -15.6 -4.72631 | opp_overlap 3516702 ACTAAGATAGAGAAA GCTACGTTAGATCC AAA GCATCTAACGTAGC TTTTATTAAATTCAT CLL_A3339 3517033 - 3516749 - | stress responsive alpha-beta barrel domain protein CLL_A3340 3518239 - 3517292 - | hypothetical protein CLL_A3341 3519616 - 3518255 - | transporter TERM 4587 3519054 - 3519065 + g 78 -4.4 -5.48054 | opp_overlap 3519054 GCTAAAAATAAATTA CCAA AGCT TTGG TTTTTTAGTTTTCCT CLL_A3342 3520497 - 3519613 - | hypothetical protein TERM 4588 3520802 - 3520765 - R 100 -20.3 -5.15117 | opp_overlap 3520765 TAAAATTTTAAAAAA TAAAGAACTCAAAAGCA TTAA TGCTTTTGAGTTCTTTA TTTTTTAAATATTAT TERM 4589 3520765 - 3520802 + r 100 -20.3 -5.17054 | opp_overlap 3520765 TAAAATTTTAAAAAA TAAAGAACTCAAAAGCA TTAA TGCTTTTGAGTTCTTTA TTTTTTAAATATTAT murB 3521736 - 3520822 - | UDP-N-acetylenolpyruvoylglucosamine reductase uvrC 3523689 - 3521809 - | excinuclease ABC, C subunit TERM 4590 3521861 - 3521889 + g 84 -9.1 -3.93216 | ATACTCTCTGCAGCC TTATTATCTATGG ATT CTGTAGATAATAA TTCTTCTAATTTAGC TERM 4591 3523144 - 3523156 + g 71 -7.7 -3.60657 | TTTAGATATATATCC TGCAC ACG GTGCA TTGCATTTTTTTATA TERM 4592 3523766 - 3523726 - R 95 -10.9 -3.65522 | opp_overlap 3523726 TATGTATTCTAATAA TGTTGATATTATAATAT ACTATCG ATATTACAATATCAACA TTTAATTAACGCTAT TERM 4593 3523726 - 3523766 + r 81 -8.7 -3.91352 | opp_overlap 3523726 TATGTATTCTAATAA TGTTGATATTATAATAT ACTATCG ATATTACAATATCAACA TTTAATTAACGCTAT TERM 4594 3523772 - 3523828 + r 72 -8.5 -3.22274 | opp_overlap 3523776, overlap 3523776 AATATCAACATTTAA TTAACGCTATGTCTAAGATAGTGT-TA CATTA TACATACCATCT-AGACATAGCGTTAG TTAAATATATTTAAT TERM 4595 3523824 - 3523776 - R 70 -7.8 -3.406 | opp_overlap 3523776 3523772 TCAACATTTAATTAA CGCTATGTCTAAGATAGTGT-TAC ATT ATACATACCATCT-AGACATAGCG TTAGTTAAATATATT CLL_A3345 3525418 - 3523940 - | penicillin-binding protein TERM 4596 3524740 - 3524760 + g 82 -9.7 -3.44444 | TCTTAAAAGTTGATC CTGGTGGAT ATA ATCCTCCAG TTGCTCTGTTTATAA CLL_A3346 3526611 - 3525421 - | stage V sporulation protein E CLL_A3347 3527106 - 3526663 - | FHA-domain containing secreted protein TERM 4597 3527371 - 3527409 + r 78 -10.1 -2.54171 | gap 1, opp_overlap 3527359 3527367 3527371 3527379 3527382, overlap 3527368 3527379 3527382 AACTAAAAGAACTCA CTTT-TAAAGAATAATTT ACCT AAATTATTCTTTAGAAAG ATAATTTTTACAAAT TERM 4598 3527409 - 3527371 - R 80 -10.1 -2.77539 | gap 1, opp_overlap 3527371 3527368 3527379 3527382, overlap 3527359 3527367 3527379 3527382 AACTAAAAGAACTCA CTTT-TAAAGAATAATTT ACCT AAATTATTCTTTAGAAAG ATAATTTTTACAAAT TERM 4599 3527379 - 3527400 + r 72 -7.5 -3.54919 | opp_overlap 3527371 3527367 3527379 3527382, overlap 3527371 3527368 3527382 GAACTCACTTTTAAA GAATAATTT ACCT AAATTATTC TTTAGAAAGATAATT TERM 4600 3527400 - 3527379 - R 72 -7.5 -3.58269 | opp_overlap 3527379 3527371 3527368 3527382, overlap 3527371 3527367 3527382 GAACTCACTTTTAAA GAATAATTT ACCT AAATTATTC TTTAGAAAGATAATT uvrA 3530302 - 3527480 - | excinuclease ABC, A subunit TERM 4601 3529846 - 3529863 + g 70 -5.7 -4.38712 | CACGAACTATTGGAG CTAAAAT TTGA ATTTTAG TTTTATCCCCATAAG uvrB 3532280 - 3530307 - | excinuclease ABC, B subunit TERM 4602 3532542 - 3532500 - R 77 -8.7 -3.39844 | opp_overlap 3532487, overlap 3532498 GCTATATTTTAAATA TGTGTTGATATATGCAA TAGGTGAAG TGGCATACATCAACACA CTGCTAAAATAAAGC TERM 4603 3532613 - 3532570 - R 95 -9.9 -4.35742 | gap 1, opp_overlap 3532578, overlap 3532578 AGCCAATCATTAAAA GACAAAAAGCCAGTAAATTC AATAA GAATT-ACTGGCTTTATATC ATATAGTTGCTATTT TERM 4604 3532578 - 3532605 + r 77 -7.9 -4.11805 | gap 1, opp_overlap 3532570 3532578 ATTAAAAGACAAAAA GCCAGTAAATTC AATAA GAATT-ACTGGC TTTATATCATATAGT TERM 4605 3532605 - 3532578 - R 100 -7.9 -5.30339 | gap 1, opp_overlap 3532578, overlap 3532570 ATTAAAAGACAAAAA GCCAGTAAATTC AATAA GAATT-ACTGGC TTTATATCATATAGT TERM 4606 3532619 - 3532645 + r 71 -8.2 -2.95126 | opp_overlap 3532619, overlap 3532616 GCTTTATATCATATA GTTGCTATTTTA CAC TAAAATATCAAC TGCTTTCAACTTATA TERM 4607 3532645 - 3532619 - R 71 -8.2 -2.97747 | opp_overlap 3532619 3532616 GCTTTATATCATATA GTTGCTATTTTA CAC TAAAATATCAAC TGCTTTCAACTTATA CLL_A3350 3533958 - 3532672 - | hypothetical protein TERM 4608 3532788 - 3532805 + g 72 -4.9 -4.96427 | CAAGTCTTTTACCTT TACTAGT TTTA ACTGGTA TTTCTTTTATTATTC TERM 4609 3533977 - 3534001 + r 78 -7.9 -4.27467 | opp_overlap 3533977 AATCCCCCTAATTAA GCTTTTCAGTT ATA AGCTGCAAAGC TTTATTAAATTGTGG CLL_A3351 3535228 - 3533969 - | carboxyl-terminal protease TERM 4610 3535480 - 3535538 + r 82 -10.3 -2.88427 | gap 1, opp_overlap 3535491 3535497 3535501, overlap 3535491 3535497 TTAATATATTTCACT TATTTATATTATTAGAATAAATAAAGTA TTAA TACTCTATTTATTCTAATAAT-TAAAAA TATCTAAAGAATATT TERM 4611 3535528 - 3535491 - R 100 -13.9 -2.64933 | opp_overlap 3535491 3535480 3535497, overlap 3535497 3535501 CACTTATTTATATTA TTAGAATAAATAAAGTA TTAA TACTCTATTTATTCTAA TAATTAAAAATATCT TERM 4612 3535491 - 3535528 + r 86 -11.7 -2.7317 | opp_overlap 3535491 3535497 3535501, overlap 3535480 3535497 CACTTATTTATATTA TTAGAATAAATAAAGTA TTAA TACTCTATTTATTCTAA TAATTAAAAATATCT CLL_A3352 3536494 - 3535604 - | cell-division protein TERM 4613 3536399 - 3536435 + g 71 -4.5 -4.87389 | opp_overlap 3536401 3536404, overlap 3536404 AACAAAGAAGGTTAT AAGTACTGTAAGTATTG AGG CAAAACTTATAGTTCTA TTTCTTTTTAAACTA TERM 4614 3536404 - 3536430 + g 75 -7.4 -4.11447 | opp_overlap 3536404 3536401, overlap 3536399 AGAAGGTTATAAGTA CTGTAAGTATTG AGG CAAAACTTATAG TTCTATTTCTTTTTA ftsE 3537170 - 3536484 - | cell division ATP-binding protein FtsE CLL_A3354 3538139 - 3537288 - | transporter TERM 4615 3538453 - 3538428 - R 100 -9.2 -5.86965 | opp_overlap 3538428 3538452 ATTTATGAAAAAAAA GATAGCAATA AATACA TATTGCTATC TTATAATTTATATAT TERM 4616 3538428 - 3538453 + r 84 -9.2 -3.67705 | opp_overlap 3538428, overlap 3538452 ATTTATGAAAAAAAA GATAGCAATA AATACA TATTGCTATC TTATAATTTATATAT TERM 4617 3538457 - 3538479 + r 70 -8 -3.43246 | opp_overlap 3538460, overlap 3538452 3538460 CATATTGCTATCTTA TAATTTATAT ATT ATATAAATTA TTAAATTATTTTTTA CLL_A3355 3539429 - 3538485 - | transketolase, pyridine binding domain TERM 4618 3539223 - 3539211 - G 72 -6.3 -4.27474 | AAATGTACTAACAAA TGGAA TTT TTCCA CAAGTTGAAAGACCT CLL_A3356 3540253 - 3539429 - | transketolase, thiamine diphosphate binding domain TERM 4619 3540044 - 3540032 - G 70 -7.7 -3.33969 | opp_overlap 3540032 3540030 TAATGCACTGTATAA TGCTG GTG CAGCA TGTCCTTTTGATAAT TERM 4620 3540370 - 3540352 - R 74 -9 -2.99471 | opp_overlap 3540344 3540352, overlap 3540354 3540356 CCATTTGTATATATA CACATATT TAA AATATGTG TTATACTATTTAAAG TERM 4621 3540352 - 3540370 + r 79 -9 -3.56837 | opp_overlap 3540352 3540354 3540356, overlap 3540344 CCATTTGTATATATA CACATATT TAA AATATGTG TTATACTATTTAAAG TERM 4622 3540472 - 3540435 - R 100 -10.9 -4.50943 | opp_overlap 3540445, overlap 3540439 CAATAACCCATAAAA TTAATATATACCATGAA TTTT TTCATGGTATATACGAA TCAAAGACTATCTTA TERM 4623 3540468 - 3540439 - R 100 -13.9 -3.76789 | opp_overlap 3540445, overlap 3540435 AACCCATAAAATTAA TATATACCATGAA TTTT TTCATGGTATATA CGAATCAAAGACTAT CLL_A3357 3541505 - 3540648 - | PTS system mannose/fructose/sorbose family IID component TERM 4624 3540712 - 3540722 + g 84 -6.8 -5.07107 | CCCATTATTTTAATT GGAG AAA CTCC TTTTTTAACCATTTG CLL_A3358 3542290 - 3541532 - | PTS system, IIc component CLL_A3359 3542858 - 3542388 - | PTS system sorbose subfamily IIB component CLL_A3360 3543299 - 3542883 - | PTS system fructose IIA component TERM 4625 3543480 - 3543458 - R 75 -9.4 -2.71688 | opp_overlap 3543463, overlap 3543457 3543455 3543452 3543450 AAAATAATATAATAT TTCAATAAAA TAA TTTTATTGAA TACTAAATAAATTAA TERM 4626 3543585 - 3543564 - R 86 -4.5 -5.86061 | opp_overlap 3543564 3543558 GTGTATTAAAAAAAA CTAAATGCA AATA CACATTTAG TTTTTAATTTATATA CLL_A3361 3546511 - 3543839 - | transcriptional regulatory protein LevR TERM 4627 3543979 - 3543994 + g 75 -3.4 -5.39721 | overlap 3543989 GTTTATTCTTACTAT TTTTTA TTGT TAAAAA TTTTTTATATGGTAA TERM 4628 3546755 - 3546773 + r 100 -7.5 -5.63103 | opp_overlap 3546755 CTGTATGCTTTAAAA GGATAGA TTTAC TCTATCC TTTTTTTAATTAAGG TERM 4629 3546773 - 3546755 - R 77 -7.5 -4.09685 | opp_overlap 3546755 CTGTATGCTTTAAAA GGATAGA TTTAC TCTATCC TTTTTTTAATTAAGG CLL_A3362 3547132 - 3546779 - | endoribonuclease EndoA CLL_A3363 3547396 - 3547142 - | uncharcterized small conserved protein, YhhG family CLL_A3364 3548396 - 3547767 - | putative membrane associated protein CLL_A3365 3549961 - 3548462 - | YjeF family protein acpS 3550334 - 3549963 - | holo-(acyl-carrier-protein) synthase CLL_A3367 3550731 - 3550408 - | hypothetical protein TERM 4630 3550927 - 3550945 + r 74 -6.2 -4.70319 | opp_overlap 3550927 3550941, overlap 3550941 TTTGTCGAATATTAA TTTAATTA CAA TAATTAAA TTTTAATTTTAGTGC TERM 4631 3551042 - 3551001 - R 83 -4.1 -5.9218 | gap 1 TACAGAACAAAAAAA TAAACCACCTT-AAATAG TATAAAT CTATTTTAAGATAGTTTA TTTTTTCCCATTTTA CLL_A3368 3551740 - 3551393 - | single-strand binding protein family CLL_A3369 3552660 - 3551812 - | YihY family protein TERM 4632 3552861 - 3552887 + r 72 -7.6 -3.49618 | opp_overlap 3552877, overlap 3552863 ATATCTCTCTTCTCA TATTTTATAGAT AAA ATTTATAAAATA TTCATTATATAAAAA TERM 4633 3552983 - 3552945 - R 100 -13.5 -4.84359 | opp_overlap 3552950 CTATTTTTAGAAAAA TTATAGGACTTAATGCT TACTG AGCACTAAATCCTATAA TAAATCATACTTAAA CLL_A3370 3554334 - 3553018 - | UDP-glucose 6-dehydrogenase CLL_A3371 3554925 - 3554335 - | hexapeptide transferase family protein CLL_A3372 3556120 - 3554939 - | erythromycin biosynthesis sensory transduction protein eryC1 TERM 4634 3556483 - 3556447 - R 100 -19.9 -5.0133 | opp_overlap 3556390 3556447 TATTTCTTTAAAAAA CACTTACTTGAATAAAT ATA ATTTATTCAAGTAAGTG TTTAATCAATCTCTT TERM 4635 3556447 - 3556483 + r 100 -19.9 -3.79138 | opp_overlap 3556447, overlap 3556390 TATTTCTTTAAAAAA CACTTACTTGAATAAAT ATA ATTTATTCAAGTAAGTG TTTAATCAATCTCTT CLL_A3373 3557106 - 3556513 - | hypothetical protein TERM 4636 3558040 - 3557984 - R 100 -22.2 -3.44517 | gap 1, opp_overlap 3557988 3557995 3557999, overlap 3557995 3557999 TAATACCTAATAATA CT-TATATAAAATAAACAGCACCTCCA AATT TGGAGGTGCTGTTTATTTTATATTTAG CTATGTTTTAAATGC TERM 4637 3557988 - 3558035 + r 100 -27.6 -3.80569 | opp_overlap 3557984 3557995 3557999, overlap 3557995 3557999 ACCTAATAATACTTA TATAAAATAAACAGCACCTCCA AATT TGGAGGTGCTGTTTATTTTATA TTTAGCTATGTTTTA TERM 4638 3558028 - 3557995 - R 100 -21.3 -4.56961 | opp_overlap 3557988 3557995 3557999, overlap 3557984 3557999 AATACTTATATAAAA TAAACAGCACCTCCA AATT TGGAGGTGCTGTTTA TTTTATATTTAGCTA TERM 4639 3557995 - 3558028 + r 100 -21.3 -4.80455 | opp_overlap 3557995 3557984 3557999, overlap 3557988 3557999 AATACTTATATAAAA TAAACAGCACCTCCA AATT TGGAGGTGCTGTTTA TTTTATATTTAGCTA TERM 4640 3558024 - 3557999 - R 100 -17.7 -4.83243 | opp_overlap 3557995 3557988 3557999, overlap 3557995 3557984 CTTATATAAAATAAA CAGCACCTCCA AATT TGGAGGTGCTG TTTATTTTATATTTA TERM 4641 3557999 - 3558024 + r 100 -17.7 -4.91778 | opp_overlap 3557999 3557995 3557984, overlap 3557995 3557988 CTTATATAAAATAAA CAGCACCTCCA AATT TGGAGGTGCTG TTTATTTTATATTTA TERM 4642 3558133 - 3558106 - R 75 -9.3 -2.53112 | opp_overlap 3558106, overlap 3558105 ATTGAACTTAGGAAT GCTAAAATGAG TATAGT CCCATTTTAGC TTGCTCCCAATATAA CLL_A3374 3559107 - 3558262 - | hypothetical protein CLL_A3375 3559861 - 3559109 - | SAM-dependent methyltransferase TERM 4643 3559419 - 3559432 + g 70 -6.7 -3.92641 | CATAAAACTTCATGC CTTGC AATA GCAAG TTTATCACTAGGATT TERM 4644 3560089 - 3560050 - R 79 -8.9 -3.5947 | opp_overlap 3560055, overlap 3560055 AATTTTTATATACAA CAAAATAAGACTAGACA ATTGCA TATCTAGCCTTATTTTA AAATTATATATTATA TERM 4645 3560084 - 3560055 - R 78 -6.6 -4.87592 | opp_overlap 3560055, overlap 3560050 TTATATACAACAAAA TAAGACTAGACA ATTGCA TATCTAGCCTTA TTTTAAAATTATATA CLL_A3376 3561383 - 3560100 - | SagA protein TERM 4646 3560503 - 3560516 + g 79 -3.7 -5.65513 | overlap 3560500 GTGTTAGCTGAAGCT GCTGC CGCT GCTGC TTTTTTTGCTTCCTC TERM 4647 3560911 - 3560927 + g 70 -2.3 -5.4251 | GAATCTCTTTTTTCA GCTAT TTCTTTT ATAGC TTTTTTATCTCTACC TERM 4648 3561377 - 3561391 + g 74 -8.6 -3.14404 | TCCTCATCCAATGCC GGTTCA TTT TGAACC TTCCCTCCTTCATAT TERM 4649 3561773 - 3561749 - H 73 -5.8 -4.79373 | opp_overlap 3561752, overlap 3561752 TAATACAACATAAAA GAACTTAAGG CATCC CCTTAAGTTT TTTTTATAACTTTTT TERM 4650 3561770 - 3561752 - H 81 -7.5 -4.46621 | opp_overlap 3561752, overlap 3561749 TACAACATAAAAGAA CTTAAGG CATCC CCTTAAG TTTTTTTTATAACTT TERM 4651 3561752 - 3561770 + H 100 -7.5 -5.97575 | opp_overlap 3561752 3561749 TACAACATAAAAGAA CTTAAGG CATCC CCTTAAG TTTTTTTTATAACTT CLL_A3377 3561810 - 3562454 + | haloacid dehalogenase, IA family protein TERM 4652 3562557 - 3562538 - T 100 -9.4 -5.94713 | opp_overlap 3562538 ATTTTATAAAAAAAA GTGGTTTT ATAT AAAACCAC TTTTTTTCTGTTACT TERM 4653 3562538 - 3562557 + T 100 -9.4 -5.82172 | opp_overlap 3562538 ATTTTATAAAAAAAA GTGGTTTT ATAT AAAACCAC TTTTTTTCTGTTACT CLL_A3378 3563333 - 3562590 - | foldase protein PrsA ung 3563464 - 3564141 + | uracil-DNA glycosylase CLL_A3380 3564575 - 3564378 - | hypothetical protein TERM 4654 3564777 - 3564745 - H 77 -7.3 -4.4017 | opp_overlap 3564743 3564745 CTAATTCTTACAAAA TAGTTTCATTTTAAA TAA TTTATAATAAAACTA TGTTTTGATATAGCA CLL_A3381 3564963 - 3565382 + | hypothetical protein TERM 4655 3565392 - 3565425 + T 76 -2 -5.87996 | GTTTAATATTTTTAT GAGTATAGAATA-GTT TTAA AACATAT-CTATGCTC TTTTTTTATTGGTTC TERM 4656 3565632 - 3565649 + T 100 -8.5 -5.53991 | opp_overlap 3565632 AAGAATAAAAAAAAA CACTAAC ATTT GTTAGTG TTTTTTTGGTGGCTC TERM 4657 3565649 - 3565632 - T 100 -8.5 -6.44931 | opp_overlap 3565632 AAGAATAAAAAAAAA CACTAAC ATTT GTTAGTG TTTTTTTGGTGGCTC CLL_A3384 3566579 - 3566088 - | molybdopterin biosynthesis mog protein TERM 4658 3566792 - 3566838 + r 100 -15.6 -2.9547 | opp_overlap 3566783 3566796, overlap 3566796 3566802 TAATAGTATTCTTAA TAAAGATAAGCTAAAGAATTTA GTT TTAACTCTTTAGCTTATCTTTA TCTATGACTATGTTT TERM 4659 3566796 - 3566834 + r 100 -12 -4.14392 | opp_overlap 3566796, overlap 3566792 3566802 AGTATTCTTAATAAA GATAAGCTAAAGAATTTA GTT TTAACTCTTTAGCTTATC TTTATCTATGACTAT TERM 4660 3566834 - 3566796 - R 100 -14.2 -4.1711 | opp_overlap 3566796 3566792 3566802 AGTATTCTTAATAAA GATAAGCTAAAGAATTTA GTT TTAACTCTTTAGCTTATC TTTATCTATGACTAT CLL_A3385 3567422 - 3566967 - | transcriptional regulator, AraC family TERM 4661 3567488 - 3567498 + r 73 -2.6 -5.75599 | overlap 3567479 3567490 GACATCTATGTGTCA TATT ATA AATA TTTTTTTATAATTTC CLL_A3386 3568386 - 3567490 - | DeoR-family transcriptional regulator TERM 4662 3569127 - 3569139 + G 71 -7.7 -3.52762 | overlap 3569123 TTCATTAGTTGTTTA TCCAG CGG CTGGA TTAATTGATTATTTT CLL_A3387 3568534 - 3569271 + | NAD-dependent deacetylase TERM 4663 3569330 - 3569278 - T 91 -8.2 -5.01553 | opp_overlap 3569279 3569281 3569282, overlap 3569282 AATTTATAAATAAAA TAAATCTGGTCACTAT-ATATGTATT TTA ACTACATATTATAGTGACCAGAA-TA TTTTTTAATATATTT TERM 4664 3569279 - 3569330 + T 100 -9.8 -5.28755 | gap 1, opp_overlap 3569278 3569282, overlap 3569281 3569282 ATTTATAAATAAAAT AAATCTGGTCACTAT-ATATGTATT TTA ACTACATATTATAGTGACCAGAATA TTTTTTAATATATTT TERM 4665 3569281 - 3569328 + T 100 -12.4 -4.24891 | gap 1, opp_overlap 3569278 3569282, overlap 3569279 3569282 TTATAAATAAAATAA ATCTGGTCACTAT-ATATGTATT TTA ACTACATATTATAGTGACCAGAA TATTTTTTAATATAT TERM 4666 3569327 - 3569282 - T 100 -15.9 -5.00611 | gap 1, opp_overlap 3569281 3569279 3569282, overlap 3569278 TATAAATAAAATAAA TCTGGTCACTAT-ATATGTATT TTA ACTACATATTATAGTGACCAGA ATATTTTTTAATATA TERM 4667 3569282 - 3569327 + T 100 -15.9 -3.13308 | gap 1, opp_overlap 3569282 3569278, overlap 3569281 3569279 TATAAATAAAATAAA TCTGGTCACTAT-ATATGTATT TTA ACTACATATTATAGTGACCAGA ATATTTTTTAATATA CLL_A3388 3570342 - 3569407 - | lipoate-protein ligase A lpdA 3572035 - 3570335 - | dihydrolipoyl dehydrogenase TERM 4668 3572096 - 3572061 - R 79 -7.1 -4.65895 | gap 1, opp_overlap 3572060 CCTTCTATGTAAAAA GGTTGT-CATAAAATC AACTA GATGTTATGAACAACC CCTATATTTTTATTT CLL_A3390 3572480 - 3572127 - | alkylhydroperoxidase AhpD domain protein TERM 4669 3572580 - 3572563 - R 78 -5.6 -5.24129 | opp_overlap 3572563 3572579, overlap 3572545 TCTTTGTATAAAAAA TACCAC ATCAAA GTGGTA TTGTCAATATTTACA CLL_A3391 3573012 - 3572584 - | transcriptional regulator, MarR family TERM 4670 3573101 - 3573138 + r 100 -17.4 -5.13473 | opp_overlap 3573101 TAATCTATAAAAAAA TATAGGGTATGTTTTC TAAAGT GAAAACATACCCTATA TTTTTTAACTCTGAT TERM 4671 3573138 - 3573101 - R 100 -17.4 -5.66684 | opp_overlap 3573101 TAATCTATAAAAAAA TATAGGGTATGTTTTC TAAAGT GAAAACATACCCTATA TTTTTTAACTCTGAT CLL_A3392 3573421 - 3573251 - | nitrogen-fixing NifU domain protein TERM 4672 3573504 - 3573542 + H 75 -7.1 -4.27861 | opp_overlap 3573504 3573518 CATACTACACAGAAT TTCAATAGTAAATATTA TTAAT TAATAATTATTATTGAA TTTTAAATATATGTT CLL_A3393 3573787 - 3574236 + | hypothetical protein CLL_A3394 3575528 - 3574518 - | caax amino protease family protein TERM 4673 3575707 - 3575667 - R 100 -14.3 -3.89212 | opp_overlap 3575669 3575703, overlap 3575668 3575703 3575706 TATTTATATACCAAA CTTTATTCCTATTGCTATC TGT GATAGCAATAGGAATAATT TTTTATTTTAATTAA TERM 4674 3575706 - 3575668 - R 100 -17.8 -2.93045 | opp_overlap 3575669 3575703, overlap 3575667 3575703 ATTTATATACCAAAC TTTATTCCTATTGCTATC TGT GATAGCAATAGGAATAAT TTTTTATTTTAATTA TERM 4675 3575669 - 3575705 + r 100 -21.3 -5.85244 | opp_overlap 3575668 3575667 3575703, overlap 3575703 TTTATATACCAAACT TTATTCCTATTGCTATC TGT GATAGCAATAGGAATAA TTTTTTATTTTAATT TERM 4676 3575772 - 3575761 - R 76 -3 -5.85244 | AATTAAAATAAAAAA CATT GATT AATG CATATCTTCTACTTC CLL_A3395 3576252 - 3575767 - | CinA family protein CLL_A3396 3576884 - 3576276 - | phosphoglycerate mutase family protein TERM 4677 3577149 - 3577116 - R 100 -9.1 -5.42975 | opp_overlap 3577116 3577148 TTACATAAATAAAAA CCACTTAACTGCAAT ATAT ATTACAATTAAATGG TTTTATAAAAAATCT CLL_A3397 3578126 - 3577173 - | glucokinase CLL_A3398 3578481 - 3578245 - | hypothetical protein fusA 3580733 - 3578652 - | translation elongation factor G TERM 4678 3580858 - 3580868 + H 70 -2.6 -5.49579 | opp_overlap 3580858, overlap 3580853 TTTATATTTTAAAAA TATT CAG AATA TTTTATTTTTTCTAA TERM 4679 3581481 - 3581469 - g 74 -2.7 -5.56264 | TTTAAACATAAAAAA TAGCT TAA AACTA ACTTTTATAGGTATT TERM 4680 3582366 - 3582356 - g 71 -2.6 -5.43553 | overlap 3582351 AGCTAAAAAATAAAA TATT TTT AATA TGGACTATTATGTTT CLL_A3400 3581044 - 3582558 + | hypothetical protein CLL_A3401 3582757 - 3584571 + | sulfatase family protein TERM 4681 3584592 - 3584580 - T 75 -5.5 -5.04082 | opp_overlap 3584580 3584578 TAAATAAGAACAAAA GTGGC TGA ACCAC TCTTTTTAGTTGAGA TERM 4682 3584651 - 3584709 + T 100 -21.6 -4.27861 | opp_overlap 3584669, overlap 3584669 GAAATTTTATGATTT CATGTAAAATAACAAAAAGGATGTTGAA TAT TTCAACATCCTTTTTGTTATTGAATATG TTTTAAATATGTATT TERM 4683 3584691 - 3584669 - T 100 -13.6 -5.4593 | opp_overlap 3584651 3584669 GTAAAATAACAAAAA GGATGTTGAA TAT TTCAACATCC TTTTTGTTATTGAAT TERM 4684 3584669 - 3584691 + T 100 -13.6 -5.30348 | opp_overlap 3584669, overlap 3584651 GTAAAATAACAAAAA GGATGTTGAA TAT TTCAACATCC TTTTTGTTATTGAAT TERM 4685 3584825 - 3584851 + T 77 -8.9 -3.44686 | opp_overlap 3584824, overlap 3584823 3584831 TATATTTGGAGCAAG CTAAAATGGGA CTATA TCTCATTTTAG TATTCTTAAGTTCAA CLL_A3402 3586471 - 3584936 - | aminobenzoyl-glutamate transport protein TERM 4686 3586436 - 3586456 + g 84 -3.3 -5.80951 | overlap 3586437 TATCTTTTCTACCCA TGTAAGTAT CCC AGACTTACG TTTTTTGTTTTCCAT TERM 4687 3586639 - 3586665 + r 73 -4.6 -5.1286 | ATTATAGCATTATTT TGATTTTTTTAG TAT TTAAAAAATTCA TTTTTGTAATTTTTC TERM 4688 3586688 - 3586735 + r 100 -19 -4.07618 | opp_overlap 3586688, overlap 3586694 AATTTTTCATAAAAA TTAAAAGCCTTGAGATTAAA TTTTATTT TTTAATCTCAAGGCTTTTAA TTTACTTATTACAAA TERM 4689 3586735 - 3586688 - R 100 -19 -4.84017 | opp_overlap 3586688 3586694 AATTTTTCATAAAAA TTAAAAGCCTTGAGATTAAA TTTTATTT TTTAATCTCAAGGCTTTTAA TTTACTTATTACAAA TERM 4690 3586694 - 3586729 + r 100 -13.6 -4.62957 | opp_overlap 3586688, overlap 3586688 TCATAAAAATTAAAA GCCTTGAGATTAAA TTTTATTT TTTAATCTCAAGGC TTTTAATTTACTTAT CLL_A3403 3587167 - 3586703 - | acetobutylicum phosphotransbutyrylase CLL_A3404 3587799 - 3587362 - | hypothetical protein TERM 4691 3588041 - 3587984 - H 82 -8.3 -4.44608 | opp_overlap 3587984 3587987, overlap 3587987 TTTATTTAAAAACAA TAATAATAATTTATTCATATATTAATA AATT TACTATTATATGAACAAACTATTATTG TTATACGTTTAAAAT TERM 4692 3588038 - 3587987 - H 95 -10 -4.32491 | opp_overlap 3587984 3587987, overlap 3587984 ATTTAAAAACAATAA TAATAATTTATTCATATATTAATA AATT TACTATTATATGAACAAACTATTA TTGTTATACGTTTAA CLL_A3405 3588115 - 3588516 + | hypothetical protein TERM 4693 3588514 - 3588537 + T 100 -11.2 -4.88736 | opp_overlap 3588514 GAAAAGGCAAAAAAA TAAGCTATGA ATAT TCATAGCTTA TTTTTATAAATGGTG TERM 4694 3588537 - 3588514 - T 100 -11.2 -5.61824 | opp_overlap 3588514 GAAAAGGCAAAAAAA TAAGCTATGA ATAT TCATAGCTTA TTTTTATAAATGGTG TERM 4695 3590442 - 3590458 + T 74 -8.7 -3.05343 | CAGCGGACGAACCTT CCTGAGG AAA CCTTAGG TATTCGGCCTGTGGG TERM 4696 3591031 - 3591041 + T 71 -6.8 -4.15453 | opp_overlap 3591020 GCAACGTGGTTCGGT CCTC CAC GAGG TTTTACCCTCGCTTC TERM 4697 3591267 - 3591278 + T 75 -7.2 -4.2354 | AGGTTCTATTTCACT CCCC TCCC GGGG TTCTTTTCACCTTTC TERM 4698 3591341 - 3591356 + T 81 -10.4 -2.71011 | GTAGTATTTAGCCTT GGGAGG TGGT CCTCCC TGCTTCCCACAAGGT TERM 4699 3591508 - 3591525 + T 76 -8.5 -3.695 | GTTCTGTCCGCAACC CCAAAGA TAAA TCTTTGG TTTGGGCTCTTTCCC TERM 4700 3591652 - 3591667 + T 72 -9 -2.69489 | opp_overlap 3591652 3591654, overlap 3591649 ATTCACTTTACGATA CATGGG GTTT CCCATG TGAGTTTCCTCATTC TERM 4701 3591667 - 3591652 - T 73 -9 -2.79915 | opp_overlap 3591652 3591649, overlap 3591654 ATTCACTTTACGATA CATGGG GTTT CCCATG TGAGTTTCCTCATTC TERM 4702 3591931 - 3591903 - T 95 -10.5 -3.94 | overlap 3591905 GCAATTTTCAAAGAA CATTTTGAAAGAC TTA GTCTTTCAAAATT GAACAGAATCTACAT TERM 4703 3591929 - 3591905 - T 100 -13.1 -3.55603 | overlap 3591903 AATTTTCAAAGAACA TTTTGAAAGAC TTA GTCTTTCAAAA TTGAACAGAATCTAC TERM 4704 3592039 - 3592058 + T 75 -9.2 -2.65808 | opp_overlap 3592030 3592027, overlap 3592036 3592036 AAAGGAGGTGATCCA GCCGCAGG TTCT CCTACGGC TACCTTGTTACGACT TERM 4705 3593930 - 3593954 + T 70 -7.9 -3.29829 | AAAATTGAGAATTGA GGTTTTTGGTT GAA AGCCAAAGGCC TTCTAAAACAATATG glgD 3595536 - 3594430 - | glucose-1-phosphate adenylyltransferase, GlgD subunit glgC 3596718 - 3595558 - | glucose-1-phosphate adenylyltransferase CLL_A3414 3598642 - 3596828 - | amylopullulanase CLL_A3415 3601249 - 3598808 - | glycogen phosphorylase CLL_A3416 3602716 - 3601280 - | glycogen synthase TERM 4706 3602029 - 3602043 + g 86 -5.7 -5.50774 | GCCAATCTAGTCTTT CTCCA AACTC TGGAG TTTTTATTTCTTCTG TERM 4707 3602759 - 3602769 + r 70 -2.6 -5.52986 | TATTGATTATTTAGT TATT TCT AATA TTTTTTTCATAGCGT glgB 3605095 - 3602858 - | 1,4-alpha-glucan branching enzyme TERM 4708 3605609 - 3605578 - H 91 -8.2 -5.04868 | opp_overlap 3605577 3605578 TGAAATTAAAGAAAA TGCAGTATTAATTA AAAA TAACTAGTACTGCA CTTTAATGATTCATC TERM 4709 3605753 - 3605731 - H 100 -10 -5.24989 | opp_overlap 3605731 TTATATACTAAAAAA GAGATAGTTA TAA CAACTATCTC TTTAACTTACCTGGC TERM 4710 3605731 - 3605753 + H 84 -9.3 -3.76952 | opp_overlap 3605731 TTATATACTAAAAAA GAGATAGTT ATAAC AACTATCTC TTTAACTTACCTGGC TERM 4711 3607490 - 3607506 + H 74 -8.7 -3.05343 | CAGCGGACGAACCTT CCTGAGG AAA CCTTAGG TATTCGGCCTGTGGG TERM 4712 3608079 - 3608089 + H 71 -6.8 -4.15453 | opp_overlap 3608068 GCAACGTGGTTCGGT CCTC CAC GAGG TTTTACCCTCGCTTC TERM 4713 3608315 - 3608326 + H 75 -7.2 -4.19577 | overlap 3608324 AGGTTCTATTTCACT CCCC TCCC GGGG TTCTTTTCACCCTTC TERM 4714 3608389 - 3608404 + H 81 -10.4 -2.71011 | GTAGTATTTAGCCTT GGGAGG TGGT CCTCCC TGCTTCCCACAAGGT TERM 4715 3608556 - 3608573 + H 76 -8.5 -3.695 | GTTCTGTCCGCAACC CCAAAGA TAAA TCTTTGG TTTGGGCTCTTTCCC TERM 4716 3608700 - 3608715 + H 72 -9 -2.69489 | opp_overlap 3608700 3608702, overlap 3608697 ATTCACTTTACGATA CATGGG GTTT CCCATG TGAGTTTCCTCATTC TERM 4717 3608715 - 3608700 - H 73 -9 -2.79915 | opp_overlap 3608700 3608697, overlap 3608702 ATTCACTTTACGATA CATGGG GTTT CCCATG TGAGTTTCCTCATTC TERM 4718 3608979 - 3608951 - H 95 -10.5 -3.94 | overlap 3608953 GCAATTTTCAAAGAA CATTTTGAAAGAC TTA GTCTTTCAAAATT GAACAGAATCTACAT TERM 4719 3608977 - 3608953 - H 100 -13.1 -3.55603 | overlap 3608951 AATTTTCAAAGAACA TTTTGAAAGAC TTA GTCTTTCAAAA TTGAACAGAATCTAC TERM 4720 3609087 - 3609106 + H 75 -9.2 -2.65808 | opp_overlap 3609078 3609075, overlap 3609084 3609084 AAAGGAGGTGATCCA GCCGCAGG TTCT CCTACGGC TACCTTGTTACGACT TERM 4721 3610678 - 3610695 + H 81 -5.6 -5.31091 | GACCAAATTTTCGTT GTTGAC TTTCTT GTCAAC TTTTGTTTTATTGTG TERM 4722 3611747 - 3611781 + H 100 -9.5 -5.80364 | opp_overlap 3611747 3611754 GTTACTGTTAAATCA GGCATAAGTTTTCTT GCATA AAGAAATCTTATGTC TTTTTTTGTTAACAT TERM 4723 3611879 - 3611898 + H 80 -9.4 -3.15228 | opp_overlap 3611881, overlap 3611878 AGAAAGGATGTGAAT TATCCTGA TAAG TCAGGATA TAATTTATGTTTGGA ptbA 3611905 - 3612396 + | PTS system, glucose subfamily, IIA component TERM 4724 3612423 - 3612464 + T 75 -8.1 -3.50877 | opp_overlap 3612425, overlap 3612422 3612424 TATTCACAAAATTTA AATGCCCTAGTAGATAACT CAAT ATTTATCTGCTAGGGCAAA ATTTTTATAAACTAA TERM 4725 3612424 - 3612463 + T 86 -11.6 -2.70044 | opp_overlap 3612425, overlap 3612423 3612422 ATTCACAAAATTTAA ATGCCCTAGTAGATAACT CAAT ATTTATCTGCTAGGGCAA AATTTTTATAAACTA TERM 4726 3612462 - 3612425 - T 100 -12.9 -3.96705 | opp_overlap 3612424 3612423 3612422 TTCACAAAATTTAAA TGCCCTAGTAGATAACT CAAT ATTTATCTGCTAGGGCA AAATTTTTATAAACT CLL_A3423 3614148 - 3612496 - | PTS system, glucose-like IIB component TERM 4727 3614260 - 3614245 - R 79 -4 -5.65927 | overlap 3614255 TATGCAAATAAAAAA GACTTA AATA TAAGCC CAGAAAAATTTATTC CLL_A3424 3615246 - 3614392 - | transcription antiterminator LicT TERM 4728 3615073 - 3615083 + g 74 -2.6 -5.59879 | ATTTTCTTTGTTTTC TATT GTA AATA TTTTTTCTATTTCTG CLL_A3425 3616434 - 3615487 - | acetyltransferase, gnat family TERM 4729 3616179 - 3616162 - G 79 -4.9 -5.37593 | GCCTAAATCAAAAAA GGAATTA ACCT CAATTCC CTCTACAGCCCTAAT TERM 4730 3616493 - 3616464 - R 79 -8.7 -3.76952 | opp_overlap 3616464 3616466 TGCATTTAATTGAAA TAGCACTCACATT TGTT AATGAAAGTGCTA TCCTATATCTATTAT CLL_A3426 3617020 - 3616556 - | hypothetical protein TERM 4731 3617189 - 3617208 + r 70 -3.4 -5.31456 | opp_overlap 3617189, overlap 3617191 GTTTAAACCAAAAAA GCCAGAGC TTTC GCCCTGAC TTTTTTATAAGTTCC TERM 4732 3617208 - 3617189 - R 100 -7.8 -5.37593 | opp_overlap 3617189 3617191 GTTTAAACCAAAAAA GCCAGAGC TTTC GCCCTGAC TTTTTTATAAGTTCC TERM 4733 3617245 - 3617229 - R 72 -8.1 -3.17219 | TATAAGTTCCACTAA CTAAATC AAA GATTTAG AATGTCAATTATCTT CLL_A3427 3618633 - 3617254 - | flagellin TERM 4734 3618889 - 3618941 + r 95 -13 -3.19653 | opp_overlap 3618889, overlap 3618908 3618938 ATCGAAATAAAAAAA GAGCGATCTTCATTAAAACTTAGC TTCCT GCTAATATTTAATGAGAATCGCTC TTCCTGAGCTTGTAC TERM 4735 3618941 - 3618889 - R 100 -13 -5.96894 | opp_overlap 3618889 3618908 3618938 ATCGAAATAAAAAAA GAGCGATCTTCATTAAAACTTAGC TTCCT GCTAATATTTAATGAGAATCGCTC TTCCTGAGCTTGTAC CLL_A3428 3619212 - 3619051 - | putative carbon storage regulator TERM 4736 3619371 - 3619383 + r 72 -4.9 -5.00616 | opp_overlap 3619371 3619366 AAATTTAAAGTAAAA TAACA TCT TGTTA TTTTTTAAGACAAGC TERM 4737 3619620 - 3619650 + r 95 -8.5 -5.19251 | opp_overlap 3619620 TTAAGATAGTAAAAA GTACTACTCAATT CATAA AATTAAGTAGTAC TTTTTATTAATATTA TERM 4738 3619650 - 3619620 - R 100 -11.4 -4.87807 | opp_overlap 3619620 TTAAGATAGTAAAAA GTACTACTCAATTC ATA AAATTAAGTAGTAC TTTTTATTAATATTA CLL_A3429 3621623 - 3619722 - | hypothetical protein TERM 4739 3621711 - 3621686 - R 90 -6.3 -5.86976 | opp_overlap 3621686 CCATAAAATAAAAAA TCATACAATAA CGTA TTATTGAATGA TTTTTTATTAGTTTT TERM 4740 3621686 - 3621711 + r 85 -6.3 -5.61689 | opp_overlap 3621686 CCATAAAATAAAAAA TCATACAATAA CGTA TTATTGAATGA TTTTTTATTAGTTTT TERM 4741 3621733 - 3621767 + r 72 -5.2 -4.9138 | opp_overlap 3621733 3621743 3621744 ATTAGTTTTTATAAA GTTATCAACACTAT CCACAAC ATGTTGTTGATAAC TTTTGTTTCAGTACT CLL_A3430 3622900 - 3622133 - | thiF domain protein TERM 4742 3623342 - 3623321 - g 93 -4.5 -6.09888 | CTTGAAGAAAAAAAA GAAAAAGCA AATA TGGTTTTTC ATAAAGGAACTATAA TERM 4743 3623649 - 3623639 - g 71 -4 -5.00616 | GCTGCTGCCAAAAAA TCTT GTG AAGA AATATCTGAATTAAA mtnN 3623243 - 3623935 + | MTA/SAH nucleosidase CLL_A3432 3625473 - 3624124 - | surface protein PspC TERM 4744 3625312 - 3625298 - G 70 -5.8 -4.26076 | opp_overlap 3625298 CCATCTTGATTAAAA TAATAC CAT GTATTA TTTATATTTTCCCAA TERM 4745 3625298 - 3625312 + g 72 -5.8 -4.45168 | opp_overlap 3625298 CCATCTTGATTAAAA TAATAC CAT GTATTA TTTATATTTTCCCAA CLL_A3433 3626803 - 3625652 - | membrane protein, YbiE/YbiF family CLL_A3434 3631541 - 3627045 - | OB-fold nucleic acid binding domain protein TERM 4746 3630637 - 3630649 + g 100 -7.7 -5.56568 | TTTAAAATATCTTCG CCTTG TTT CAAGG TTTTTTTAGTAGTAT TERM 4747 3631607 - 3631623 + r 71 -6.7 -4.08693 | GGTATCTGTGTATCG TTTTCAA TAT TTGAAAA TATTTTTATAAATTT rfbC 3632755 - 3632168 - | dTDP-4-dehydrorhamnose 3,5-epimerase CLL_A3436 3634122 - 3632803 - | CBS/transporter domain protein TERM 4748 3633981 - 3633993 + g 89 -6.3 -5.43329 | overlap 3633980 CCTTCTTATTTCCTT CTTCT GCA AGAAG TTTTATTTTATTTTT TERM 4749 3634360 - 3634321 - R 100 -17.6 -5.14894 | opp_overlap 3634321 AAAAAAGCAGAAAAA GTAACAAAATCAAAACTC AATC AAGTTTTGATTTTGTTAC TTTTTCTGCTTTTAT TERM 4750 3634321 - 3634360 + r 100 -16.9 -5.10601 | opp_overlap 3634321 AAAAAAGCAGAAAAA GTAACAAAATCAAAACT CAATCA AGTTTTGATTTTGTTAC TTTTTCTGCTTTTAT CLL_A3437 3635704 - 3634448 - | hypothetical protein TERM 4751 3635983 - 3635970 - R 91 -8.1 -5.04249 | opp_overlap 3635970 3635969 TTTCTAAAAAACAAA GTGGC TTAC GCCAC GCTTTTTTAGTTGAT TERM 4752 3635994 - 3636029 + r 76 -6.3 -4.77216 | GCCACGCTTTTTTAG TTGATAGTGGAGA CTTTAAAACC TCTCCACCATCAA TTTTTAACTATTATT CLL_A3438 3636996 - 3636088 - | D-3-phosphoglycerate dehydrogenase CLL_A3439 3638099 - 3637023 - | serine--glyoxylate aminotransferase TERM 4753 3638028 - 3638038 + g 88 -6.8 -5.24531 | TCTATGTCCTATCAT TGGC GTT GCCA TTTTTTCTAGAACAT TERM 4754 3638274 - 3638299 + r 75 -7.1 -4.30885 | overlap 3638275 GTGCTTTTCTTCACT TTTATTGTTAA TTTA TTAACAATAAG TTTTGGCTATATTTT TERM 4755 3638275 - 3638298 + r 72 -8.4 -3.16904 | overlap 3638274 TGCTTTTCTTCACTT TTATTGTTAA TTTA TTAACAATAA GTTTTGGCTATATTT TERM 4756 3638769 - 3638805 + r 100 -17 -5.99154 | opp_overlap 3638769 TAAAAAATAAAAAAA GCTCTCTAATAATTTT TTAAT AAAATTATTAGAGAGC TTTTTTTATTTAATA TERM 4757 3638805 - 3638769 - R 100 -17 -6.28401 | opp_overlap 3638769 TAAAAAATAAAAAAA GCTCTCTAATAATTTT TTAAT AAAATTATTAGAGAGC TTTTTTTATTTAATA CLL_A3440 3639000 - 3638815 - | hypothetical protein CLL_A3441 3640302 - 3639088 - | putative ABC transporter, permease protein TERM 4758 3639424 - 3639411 - G 71 -3.9 -5.02323 | opp_overlap 3639411, overlap 3639395 TTATTATAAATAAAA TTTGT AATA ACAAA GCTTTTATTATTAAC CLL_A3442 3641217 - 3640303 - | bacitracin transport ATP-binding protein BcrA TERM 4759 3641338 - 3641383 + r 100 -11 -3.92974 | gap 1, overlap 3641333 3641340 AATATAAATATGCCT GTATCTTTTTTATTTATCATT CTCTT AATGATAAATAAAAAAGA-GC TTGTATTATTTAATT TERM 4760 3641340 - 3641382 + r 90 -12.5 -2.94158 | overlap 3641338 3641333 TATAAATATGCCTGT ATCTTTTTTATTTATCATT CTCTT AATGATAAATAAAAAAGAG CTTGTATTATTTAAT CLL_A3443 3641741 - 3641493 - | sigma-K factor-processing regulatory protein BofA TERM 4761 3641702 - 3641678 - G 80 -8.1 -4.13945 | opp_overlap 3641673 ATGGCCATTTTAAAA GTTTTATCATT ACA AATAATAAAAC TAATCCAATCAGACC CLL_A3444 3642038 - 3641763 - | hypothetical protein TERM 4762 3641840 - 3641851 + g 73 -3 -5.4477 | opp_overlap 3641840 TAGCTATAAGTAATA GATA ATCA TATC TTTTTTTAGCCATTT TERM 4763 3642225 - 3642250 + r 100 -14.9 -4.96646 | AACACCTTTTTTTTC TGGAACCCAAT ATCT ATTGGGTTCCA TTTTTAGTTCTATGA recR 3642868 - 3642272 - | recombination protein RecR TERM 4764 3642776 - 3642795 + g 76 -4.2 -5.50499 | overlap 3642778 AAGGTTCAATATATG TAGCGCTA ATCT TTGCGCTG TTTTTTTACCTATAC TERM 4765 3642959 - 3642971 + r 70 -3.5 -5.32882 | AATTATATTTTAGTA TAATT TTT AATTA TTTTTTATAATACTA TERM 4766 3643035 - 3643071 + r 72 -5.1 -4.96773 | opp_overlap 3643035 TTTAGATAGTTAAAA GCATACAGCTTTAAGGA ATT TCCTCTATTCTGTATGC TTTATTTTTACTTGG TERM 4767 3643071 - 3643035 - R 75 -7.3 -4.26188 | opp_overlap 3643035 TTTAGATAGTTAAAA GCATACAGCTTTAAGGA ATT TCCTCTATTCTGTATGC TTTATTTTTACTTGG CLL_A3446 3643459 - 3643118 - | hypothetical protein dnaX 3645178 - 3643538 - | DNA polymerase III, gamma and tau subunit TERM 4768 3644886 - 3644902 + g 73 -8.1 -3.50572 | CTATCTATTCCATTG TTAGATG CTG CATCTAA TTCTGTAACATCCAT TERM 4769 3645304 - 3645292 - H 74 -6.3 -4.7078 | opp_overlap 3645292 GTAAGTATTTAAAAA TCAAC TTT GTTGA TACTATATAGTTAAT thyA 3645593 - 3646384 + | thymidylate synthase folA 3646412 - 3646906 + | dihydrofolate reductase TERM 4770 3646927 - 3646962 + T 70 -4 -5.13016 | ATTAGAGAATTCAAG GTTGAGAGCTTGGGAA TTTA TTCTTCAGCTTTCCAC TTTTTAATTTTAATT TERM 4771 3647021 - 3647079 + T 100 -21.7 -4.5477 | gap 1, opp_overlap 3647025 3647036, overlap 3647023 3647025 3647036 CTTTCCTATATATTA -AAAAGGATAAGAAAATGAGGGAATTTA AAAA TAAATTCCCTCATTTTCTTATCCTATTG TTTTGTCCTATATTG TERM 4772 3647023 - 3647076 + T 100 -25.9 -4.36649 | opp_overlap 3647025 3647036, overlap 3647021 3647025 3647036 TTCCTATATATTAAA AAGGATAAGAAAATGAGGGAATTTA AAAA TAAATTCCCTCATTTTCTTATCCTA TTGTTTTGTCCTATA TERM 4773 3647074 - 3647025 - T 100 -28.5 -4.84527 | opp_overlap 3647023 3647021 3647025 3647036, overlap 3647036 CCTATATATTAAAAA GGATAAGAAAATGAGGGAATTTA AAAA TAAATTCCCTCATTTTCTTATCC TATTGTTTTGTCCTA TERM 4774 3647025 - 3647074 + T 100 -28.5 -3.77187 | opp_overlap 3647025 3647036, overlap 3647023 3647021 3647036 CCTATATATTAAAAA GGATAAGAAAATGAGGGAATTTA AAAA TAAATTCCCTCATTTTCTTATCC TATTGTTTTGTCCTA TERM 4775 3647063 - 3647036 - T 100 -14.4 -4.88258 | opp_overlap 3647025 3647023 3647021 3647036, overlap 3647025 AAAAGGATAAGAAAA TGAGGGAATTTA AAAA TAAATTCCCTCA TTTTCTTATCCTATT TERM 4776 3647036 - 3647063 + T 100 -14.4 -4.83722 | opp_overlap 3647036 3647025, overlap 3647025 3647023 3647021 AAAAGGATAAGAAAA TGAGGGAATTTA AAAA TAAATTCCCTCA TTTTCTTATCCTATT TERM 4777 3647139 - 3647157 + T 70 -6 -4.2074 | opp_overlap 3647139, overlap 3647150 ATTCGAAAAAAAAAT CCTTCATT CTT GGTGAAGG TTTATATATTAAACC TERM 4778 3647379 - 3647357 - T 70 -3.4 -5.34555 | opp_overlap 3647361, overlap 3647361 3647363 3647376 TCAGACTATAAAAAA TTAATACCTC GAC GAGGAATTCA ATCCTGCTATAGCGG TERM 4779 3647491 - 3647473 - T 70 -7.6 -3.42069 | overlap 3647471 TGAACCTCAATAACA TTTTTTCA TCT TGAAAAAA CTATGCCTCCATTAG CLL_A3450 3648024 - 3647842 - | hypothetical protein TERM 4780 3648141 - 3648099 - R 93 -7.3 -5.63517 | opp_overlap 3648099 3648102, overlap 3648123 TCTTTAAACAAAAAA TAAGAAACACATAGTCTAA ATTTA TTAAAAAATGTGTTTCTTA ATTATATATTTTGTT TERM 4781 3648337 - 3648310 - R 72 -8.7 -2.68088 | opp_overlap 3648309, overlap 3648309 CTCCAAAGGCATAAT GCTTTTTTATA ATATCA TATAAAAAAGC CTAATTCAACTGAAT CLL_A3452 3649019 - 3648480 - | PAP2 family protein CLL_A3453 3649555 - 3649097 - | tRNA-specific adenosine deaminase TERM 4782 3649576 - 3649602 + r 71 -5.8 -4.61747 | opp_overlap 3649576, overlap 3649571 CACCTCCATAAAAAA GACTGCTGATTA TTT TTGCCAGCAGTC TTTTATGATTATTCG TERM 4783 3649602 - 3649576 - R 80 -5.9 -5.252 | opp_overlap 3649576 3649571 CACCTCCATAAAAAA GACTGCTGA TTATTTTTG CCAGCAGTC TTTTATGATTATTCG CLL_A3454 3650864 - 3649611 - | putative membrane CBS domain protein TERM 4784 3650815 - 3650805 - G 82 -5.4 -5.50499 | TGACATTGAAAAAAA TGCT GAC AGCA TAAGTAATATTATTA CLL_A3455 3652093 - 3651155 - | fructokinase TERM 4785 3651981 - 3651997 + g 84 -3.5 -5.82388 | opp_overlap 3651981 CTTGCCGCTACATTA GCTGGAG CTC CACCTGC TTTTTTTTCAAATTT CLL_A3456 3653543 - 3652086 - | sucrose-6-phosphate hydrolase CLL_A3457 3654554 - 3653562 - | sucrose repressor TERM 4786 3654709 - 3654672 - R 80 -10.2 -2.89 | opp_overlap 3654660 3654669, overlap 3654669 3654674 AGTTTTATATAATGA TATAGATTTAGTAAGA AATTAA TCTCACTAAACCTATA CAATTGTTTTATCTT TERM 4787 3654707 - 3654674 - R 71 -8.4 -2.99449 | opp_overlap 3654660 3654669, overlap 3654672 3654669 TTTTATATAATGATA TAGATTTAGTAAGA AATTAA TCTCACTAAACCTA TACAATTGTTTTATC CLL_A3458 3656086 - 3654731 - | pts system, sucrose-specific iibc component TERM 4788 3654842 - 3654806 - G 73 -7.5 -3.72775 | overlap 3654804 ATTTATTAATAAATA TCCAGGTAAACTATT CATGTAT AATAATGTACCTGGA AAAGCTGTAATTCCC TERM 4789 3656638 - 3656662 + r 100 -14.5 -5.17054 | opp_overlap 3656638 ATTAAAATATAAAAA GTCACATCATT AAA AATGATGTGAC TTTTTTACATATTAT TERM 4790 3656662 - 3656638 - R 100 -14.5 -5.30339 | opp_overlap 3656638 ATTAAAATATAAAAA GTCACATCATT AAA AATGATGTGAC TTTTTTACATATTAT CLL_A3459 3657146 - 3656679 - | hypothetical protein CLL_A3460 3658298 - 3657381 - | methyltransferase family protein TERM 4791 3657520 - 3657530 + g 75 -5.4 -4.82855 | ATTAAAAAACCACAT TTGC AAA GCAA TTTTTCCATTTCATC TERM 4792 3658749 - 3658704 - R 87 -10.5 -3.16421 | overlap 3658706 CCAATAATCATCCAA CACCGCCGCCTTAGACTATTA TTTA TAATAGCCCAAGGCGGAGAAA CGTTTCTCAAAACCA TERM 4793 3658747 - 3658706 - R 100 -15.3 -3.1371 | overlap 3658704 AATAATCATCCAACA CCGCCGCCTTAGACTATTA TTTA TAATAGCCCAAGGCGGAGA AACGTTTCTCAAAAC CLL_A3461 3659938 - 3659276 - | lipoprotein-releasing system ATP-binding protein LolD CLL_A3462 3661227 - 3659941 - | hypothetical protein CLL_A3463 3662303 - 3661224 - | efflux ABC transporter, permease protein TERM 4794 3662347 - 3662322 - R 75 -8.3 -3.64716 | opp_overlap 3662322, overlap 3662320 CTATCCTCCAAAATA GAGAGGCTACT TTTA AGTACCCCCTC TTTATTGTTTACCTG TERM 4795 3662322 - 3662347 + r 74 -6.1 -4.58585 | opp_overlap 3662322 3662320 CTATCCTCCAAAATA GAGAGGCTACT TTTA AGTACCCCCTC TTTATTGTTTACCTG CLL_A3464 3662574 - 3662356 - | hypothetical protein TERM 4796 3662847 - 3662863 + r 71 -8.1 -3.01831 | AATTGTATTCCATTT TCTTTAG CTG CTAAAGA TGCTATTTTTAAACC CLL_A3465 3663741 - 3663013 - | putative metal-dependent hydrolase TERM 4797 3663664 - 3663648 - G 76 -6.7 -4.51197 | opp_overlap 3663648 3663651 CACAATCAATTAAAA TAAGAAT ATT ATTCTTA TTAATATACGCACTT TERM 4798 3663943 - 3663921 - R 100 -9.2 -5.4251 | opp_overlap 3663921 TTTATATACAAAAAA GGCTTAACCA TTA CAGTTAAGCC TTTCTCCATATAATC TERM 4799 3663921 - 3663943 + r 75 -7.8 -3.95787 | opp_overlap 3663921 TTTATATACAAAAAA GGCTTAAC CATTACA GTTAAGCC TTTCTCCATATAATC TERM 4800 3663990 - 3664010 + r 72 -7.5 -3.57797 | overlap 3663992 GAATCGAACCTACAT CTGTCCCTT AGG AGGGGACTG TTCTATCCATTTAAC TERM 4801 3663992 - 3664008 + r 77 -8.7 -3.36054 | overlap 3663990 ATCGAACCTACATCT GTCCCTT AGG AGGGGAC TGTTCTATCCATTTA TERM 4802 3664381 - 3664391 + r 73 -6.8 -4.20769 | AAAGTAAATTCCTTA GCTC AGT GAGC TTTATATTAAAATAT CLL_A3467 3665071 - 3664415 - | hypothetical protein CLL_A3468 3667465 - 3665093 - | P-type ATPase - metal cation transport CLL_A3469 3667751 - 3668470 + | 1-acyl-sn-glycerol-3-phosphate acyltransferase TERM 4803 3668498 - 3668514 + F 70 -3.7 -5.22039 | opp_overlap 3668498 TTATAAATTGCAAAA CTTTCAA AAT TTGTAAG TTTTTTCGATTTGAC CLL_A3470 3668626 - 3670206 + | ATP-dependent RNA helicase DbpA TERM 4804 3670222 - 3670256 + T 100 -14.6 -3.3767 | opp_overlap 3670227, overlap 3670227 CATTTATTACTTTTA CAAAATTAGGGAAGAT TTA ATCTTCCCTAATTTTA ATTTTCTATATAATT TERM 4805 3670251 - 3670227 - T 100 -14.5 -4.3898 | opp_overlap 3670222 3670227 ATTACTTTTACAAAA TTAGGGAAGAT TTA ATCTTCCCTAA TTTTAATTTTCTATA TERM 4806 3670227 - 3670251 + T 100 -14.5 -4.75518 | opp_overlap 3670227, overlap 3670222 ATTACTTTTACAAAA TTAGGGAAGAT TTA ATCTTCCCTAA TTTTAATTTTCTATA CLL_A3471 3670775 - 3670254 - | hypothetical protein TERM 4807 3670819 - 3670839 + r 81 -7.1 -4.77698 | opp_overlap 3670812 3670819, overlap 3670809 TTATATTATTAAAAA TAATTTTAA ATG TTAAAATTA TTTATTTTCATATTA TERM 4808 3670839 - 3670819 - R 81 -7.1 -4.79223 | opp_overlap 3670809 3670819, overlap 3670812 TTATATTATTAAAAA TAATTTTAA ATG TTAAAATTA TTTATTTTCATATTA CLL_A3472 3671496 - 3670876 - | HD superfamily hydrolase CLL_A3473 3672614 - 3671667 - | putative phosphotransferase enzyme family TERM 4809 3672744 - 3672784 + r 100 -15.9 -2.67588 | opp_overlap 3672749, overlap 3672749 AATTTATTATAATAG AAAAAGAGATTTAAAGAAA AAC TTTCTTTAAATCTCTTTTA ATGTTTGGGTTAACT TERM 4810 3672749 - 3672779 + r 100 -15.8 -4.50358 | opp_overlap 3672749, overlap 3672744 ATTATAATAGAAAAA GAGATTTAAAGAAA AAC TTTCTTTAAATCTC TTTTAATGTTTGGGT TERM 4811 3672779 - 3672749 - R 100 -15.8 -5.16133 | opp_overlap 3672749 3672744 ATTATAATAGAAAAA GAGATTTAAAGAAA AAC TTTCTTTAAATCTC TTTTAATGTTTGGGT CLL_A3474 3672980 - 3672822 - | hypothetical protein TERM 4812 3673034 - 3673060 + H 88 -8.2 -4.76478 | opp_overlap 3673033 TGTTTTTACATATAG TTTTATGCTTTT ATT AAATGCATAAAA TTTTCCTTTATTTTA CLL_A3475 3673245 - 3674333 + | ATPase TERM 4813 3674567 - 3674607 + T 100 -13.8 -5.02502 | gap 1, opp_overlap 3674567 CATTTAAATTAAAAA CCGTCATAT-AAAATAATT TTAT AATTATTTTTATATGACGG TTTTTATATACTATA TERM 4814 3674607 - 3674567 - T 100 -13.8 -5.00138 | gap 1, opp_overlap 3674567 CATTTAAATTAAAAA CCGTCATAT-AAAATAATT TTAT AATTATTTTTATATGACGG TTTTTATATACTATA CLL_A3476 3676400 - 3674739 - | sulfate permease family protein TERM 4815 3674889 - 3674899 + g 71 -2.6 -5.49579 | CTGAACATGTGTTAT TAAA AGT TTTA TTTTATTTTTTCTGC TERM 4816 3676680 - 3676648 - R 91 -7.3 -5.54894 | overlap 3676653 AATTTAGCAAAAAAA TAAAACTAAAGAACT TTT AATCCTTTAATTTTA TTTATTTAAAAATAT TERM 4817 3676675 - 3676653 - R 70 -2.8 -5.57888 | overlap 3676648 AGCAAAAAAATAAAA CTAAAGAACT TTT AATCCTTTAA TTTTATTTATTTAAA dapA 3677625 - 3676753 - | dihydrodipicolinate synthase TERM 4818 3677688 - 3677664 - H 100 -15.9 -4.99043 | opp_overlap 3677660 3677659 TTGTCATAAAGAAAA CCCGTTATAGT ATT ACTATAACGGG TAGAGTTTCATTGCT CLL_A3478 3678239 - 3679042 + | hypothetical protein TERM 4819 3679340 - 3679377 + T 100 -17.5 -4.84146 | opp_overlap 3679340 GTCTGTATATAAAAA TATTAAACGATATTACT TATA AGTAATATCGTTTAATA TTTATTTTATATAAT TERM 4820 3679377 - 3679340 - T 100 -17.5 -4.96848 | opp_overlap 3679340 GTCTGTATATAAAAA TATTAAACGATATTACT TATA AGTAATATCGTTTAATA TTTATTTTATATAAT CLL_A3479 3680195 - 3679446 - | transporter CLL_A3480 3680958 - 3680278 - | integral membrane protein TERM 4821 3680641 - 3680622 - G 73 -3 -5.55664 | TCATGACTAAAAAAA TATATATA TAAA TATACATA AATATTCTTTTTACA TERM 4822 3681139 - 3681117 - R 100 -10 -5.48163 | opp_overlap 3681117 AAAGAAACTAAAAAA GAGATAGTTA TAA CAACTATCTC TTTAACTTACCTGGC TERM 4823 3681117 - 3681139 + r 84 -9.3 -3.76952 | opp_overlap 3681117 AAAGAAACTAAAAAA GAGATAGTT ATAAC AACTATCTC TTTAACTTACCTGGC TERM 4824 3682876 - 3682892 + r 74 -8.7 -3.05343 | CAGCGGACGAACCTT CCTGAGG AAA CCTTAGG TATTCGGCCTGTGGG TERM 4825 3683465 - 3683475 + r 71 -6.8 -4.15453 | opp_overlap 3683454 GCAACGTGGTTCGGT CCTC CAC GAGG TTTTACCCTCGCTTC TERM 4826 3683701 - 3683712 + r 75 -7.2 -4.2354 | AGGTTCTATTTCACT CCCC TCCC GGGG TTCTTTTCACCTTTC TERM 4827 3683775 - 3683790 + r 81 -10.4 -2.71011 | GTAGTATTTAGCCTT GGGAGG TGGT CCTCCC TGCTTCCCACAAGGT TERM 4828 3683942 - 3683959 + r 76 -8.5 -3.695 | GTTCTGTCCGCAACC CCAAAGA TAAA TCTTTGG TTTGGGCTCTTTCCC TERM 4829 3684086 - 3684101 + r 72 -9 -2.69489 | opp_overlap 3684086 3684088, overlap 3684083 ATTCACTTTACGATA CATGGG GTTT CCCATG TGAGTTTCCTCATTC TERM 4830 3684101 - 3684086 - R 73 -9 -2.79915 | opp_overlap 3684083 3684086, overlap 3684088 ATTCACTTTACGATA CATGGG GTTT CCCATG TGAGTTTCCTCATTC TERM 4831 3684365 - 3684337 - R 95 -10.5 -3.94 | overlap 3684339 GCAATTTTCAAAGAA CATTTTGAAAGAC TTA GTCTTTCAAAATT GAACAGAATCTACAT TERM 4832 3684363 - 3684339 - R 100 -13.1 -3.55603 | overlap 3684337 AATTTTCAAAGAACA TTTTGAAAGAC TTA GTCTTTCAAAA TTGAACAGAATCTAC TERM 4833 3684473 - 3684492 + r 75 -9.2 -2.65808 | opp_overlap 3684464 3684461, overlap 3684470 3684470 AAAGGAGGTGATCCA GCCGCAGG TTCT CCTACGGC TACCTTGTTACGACT TERM 4834 3686454 - 3686435 - R 71 -6.6 -4.03413 | opp_overlap 3686435 3686430 3686438, overlap 3686438 ATCTTTCTATATAAA TAATCATT TTAA AATGATTA TTTACTCCTTATATC TERM 4835 3686817 - 3686839 + r 84 -9.3 -3.76952 | opp_overlap 3686817 TTATATACTAAAAAA GAGATAGTT ATAAC AACTATCTC TTTAACTTACCTGGC TERM 4836 3686839 - 3686817 - R 100 -10 -5.24989 | opp_overlap 3686817 TTATATACTAAAAAA GAGATAGTTA TAA CAACTATCTC TTTAACTTACCTGGC TERM 4837 3688576 - 3688592 + r 74 -8.7 -3.05343 | CAGCGGACGAACCTT CCTGAGG AAA CCTTAGG TATTCGGCCTGTGGG TERM 4838 3689165 - 3689175 + r 71 -6.8 -4.15453 | opp_overlap 3689154 GCAACGTGGTTCGGT CCTC CAC GAGG TTTTACCCTCGCTTC TERM 4839 3689401 - 3689412 + r 75 -7.2 -4.2354 | AGGTTCTATTTCACT CCCC TCCC GGGG TTCTTTTCACCTTTC TERM 4840 3689475 - 3689490 + r 81 -10.4 -2.71011 | GTAGTATTTAGCCTT GGGAGG TGGT CCTCCC TGCTTCCCACAAGGT TERM 4841 3689642 - 3689659 + r 76 -8.5 -3.695 | GTTCTGTCCGCAACC CCAAAGA TAAA TCTTTGG TTTGGGCTCTTTCCC TERM 4842 3689786 - 3689801 + r 72 -9 -2.69489 | opp_overlap 3689786 3689788, overlap 3689783 ATTCACTTTACGATA CATGGG GTTT CCCATG TGAGTTTCCTCATTC TERM 4843 3689801 - 3689786 - R 73 -9 -2.79915 | opp_overlap 3689786 3689783, overlap 3689788 ATTCACTTTACGATA CATGGG GTTT CCCATG TGAGTTTCCTCATTC TERM 4844 3690065 - 3690037 - R 95 -10.5 -3.94 | overlap 3690039 GCAATTTTCAAAGAA CATTTTGAAAGAC TTA GTCTTTCAAAATT GAACAGAATCTACAT TERM 4845 3690063 - 3690039 - R 100 -13.1 -3.55603 | overlap 3690037 AATTTTCAAAGAACA TTTTGAAAGAC TTA GTCTTTCAAAA TTGAACAGAATCTAC TERM 4846 3690173 - 3690192 + r 75 -9.2 -2.65808 | opp_overlap 3690164 3690161, overlap 3690170 3690170 AAAGGAGGTGATCCA GCCGCAGG TTCT CCTACGGC TACCTTGTTACGACT TERM 4847 3691764 - 3691781 + r 81 -5.6 -5.31091 | GACCAAATTTTCGTT GTTGAC TTTCTT GTCAAC TTTTGTTTTATTGTG TERM 4848 3692286 - 3692265 - R 77 -7.5 -4.0648 | opp_overlap 3692265 3692269 AATTACATTAAATAA TCAATATTA AATC TAATATTGA TATCTATAGCTTTAA TERM 4849 3693393 - 3693361 - R 100 -18.1 -6.01725 | opp_overlap 3693361 3693369 AAGAAAAATAAAAAA GTGCAAAACTAATTA TTT TAATTAGTTTTGCAC TTAATATATATAACT TERM 4850 3693361 - 3693393 + r 100 -18.1 -3.35465 | opp_overlap 3693361, overlap 3693369 AAGAAAAATAAAAAA GTGCAAAACTAATTA TTT TAATTAGTTTTGCAC TTAATATATATAACT TERM 4851 3693369 - 3693385 + r 73 -6.7 -4.21098 | opp_overlap 3693361, overlap 3693361 TAAAAAAGTGCAAAA CTAATTA TTT TAATTAG TTTTGCACTTAATAT CLL_A3489 3693622 - 3693506 - | hypothetical protein TERM 4852 3693604 - 3693582 - G 100 -10 -5.24989 | opp_overlap 3693582 TTATATACTAAAAAA GAGATAGTTA TAA CAACTATCTC TTTAAACTTACCTGG TERM 4853 3693582 - 3693604 + g 84 -9.3 -3.6715 | opp_overlap 3693582 TTATATACTAAAAAA GAGATAGTT ATAAC AACTATCTC TTTAAACTTACCTGG TERM 4854 3695342 - 3695358 + r 74 -8.7 -3.05343 | CAGCGGACGAACCTT CCTGAGG AAA CCTTAGG TATTCGGCCTGTGGG TERM 4855 3695931 - 3695941 + r 71 -6.8 -4.15453 | opp_overlap 3695920 GCAACGTGGTTCGGT CCTC CAC GAGG TTTTACCCTCGCTTC TERM 4856 3696167 - 3696178 + r 75 -7.2 -4.2354 | AGGTTCTATTTCACT CCCC TCCC GGGG TTCTTTTCACCTTTC TERM 4857 3696241 - 3696256 + r 81 -10.4 -2.71011 | GTAGTATTTAGCCTT GGGAGG TGGT CCTCCC TGCTTCCCACAAGGT TERM 4858 3696408 - 3696425 + r 76 -8.5 -3.695 | GTTCTGTCCGCAACC CCAAAGA TAAA TCTTTGG TTTGGGCTCTTTCCC TERM 4859 3696567 - 3696552 - R 73 -9 -2.79915 | opp_overlap 3696549 3696552, overlap 3696554 ATTCACTTTACGATA CATGGG GTTT CCCATG TGAGTTTCCTCATTC TERM 4860 3696552 - 3696567 + r 72 -9 -2.69489 | opp_overlap 3696552 3696554, overlap 3696549 ATTCACTTTACGATA CATGGG GTTT CCCATG TGAGTTTCCTCATTC TERM 4861 3696831 - 3696803 - R 95 -10.5 -3.94 | overlap 3696805 GCAATTTTCAAAGAA CATTTTGAAAGAC TTA GTCTTTCAAAATT GAACAGAATCTACAT TERM 4862 3696829 - 3696805 - R 100 -13.1 -3.55603 | overlap 3696803 AATTTTCAAAGAACA TTTTGAAAGAC TTA GTCTTTCAAAA TTGAACAGAATCTAC TERM 4863 3696939 - 3696958 + r 75 -9.2 -2.65808 | opp_overlap 3696930 3696927, overlap 3696936 3696936 AAAGGAGGTGATCCA GCCGCAGG TTCT CCTACGGC TACCTTGTTACGACT CLL_A3494 3699220 - 3699050 - | transposase, family TERM 4864 3699540 - 3699558 + r 75 -8.8 -3.24924 | opp_overlap 3699543, overlap 3699538 AAAAGCTCTCCGGAA CCACCGGT ATA ACCGCTGG TATTCTAAATACAAA TERM 4865 3699583 - 3699615 + r 100 -18.1 -3.16743 | opp_overlap 3699583, overlap 3699591 TACAAAAATAAAAAA GTGCAAAACTAATTA TTT TAATTAGTTTTGCAC TTACATATATAACTT TERM 4866 3699615 - 3699583 - R 100 -18.1 -5.98675 | opp_overlap 3699583 3699591 TACAAAAATAAAAAA GTGCAAAACTAATTA TTT TAATTAGTTTTGCAC TTACATATATAACTT TERM 4867 3699591 - 3699607 + r 73 -6.7 -4.19953 | opp_overlap 3699583, overlap 3699583 TAAAAAAGTGCAAAA CTAATTA TTT TAATTAG TTTTGCACTTACATA TERM 4868 3699726 - 3699748 + r 84 -9.3 -3.6715 | opp_overlap 3699726 TTATATACTAAAAAA GAGATAGTT ATAAC AACTATCTC TTTAAGCTTACCTGG TERM 4869 3699748 - 3699726 - R 100 -10 -5.24989 | opp_overlap 3699726 TTATATACTAAAAAA GAGATAGTTA TAA CAACTATCTC TTTAAGCTTACCTGG TERM 4870 3701486 - 3701502 + r 74 -8.7 -3.05343 | CAGCGGACGAACCTT CCTGAGG AAA CCTTAGG TATTCGGCCTGTGGG TERM 4871 3702075 - 3702085 + r 71 -6.8 -4.15453 | opp_overlap 3702064 GCAACGTGGTTCGGT CCTC CAC GAGG TTTTACCCTCGCTTC TERM 4872 3702311 - 3702322 + r 75 -7.2 -4.2354 | AGGTTCTATTTCACT CCCC TCCC GGGG TTCTTTTCACCTTTC TERM 4873 3702385 - 3702400 + r 81 -10.4 -2.71011 | GTAGTATTTAGCCTT GGGAGG TGGT CCTCCC TGCTTCCCACAAGGT TERM 4874 3702552 - 3702569 + r 76 -8.5 -3.695 | GTTCTGTCCGCAACC CCAAAGA TAAA TCTTTGG TTTGGGCTCTTTCCC TERM 4875 3702711 - 3702696 - R 73 -9 -2.79915 | opp_overlap 3702693 3702696, overlap 3702698 ATTCACTTTACGATA CATGGG GTTT CCCATG TGAGTTTCCTCATTC TERM 4876 3702696 - 3702711 + r 72 -9 -2.69489 | opp_overlap 3702696 3702698, overlap 3702693 ATTCACTTTACGATA CATGGG GTTT CCCATG TGAGTTTCCTCATTC TERM 4877 3702975 - 3702947 - R 95 -10.5 -3.94 | overlap 3702949 GCAATTTTCAAAGAA CATTTTGAAAGAC TTA GTCTTTCAAAATT GAACAGAATCTACAT TERM 4878 3702973 - 3702949 - R 100 -13.1 -3.55603 | overlap 3702947 AATTTTCAAAGAACA TTTTGAAAGAC TTA GTCTTTCAAAA TTGAACAGAATCTAC TERM 4879 3703083 - 3703102 + r 75 -9.2 -2.65808 | opp_overlap 3703074 3703071, overlap 3703080 3703080 AAAGGAGGTGATCCA GCCGCAGG TTCT CCTACGGC TACCTTGTTACGACT TERM 4880 3704674 - 3704691 + r 81 -5.6 -5.31091 | GACCAAATTTTCGTT GTTGAC TTTCTT GTCAAC TTTTGTTTTATTGTG TERM 4881 3705577 - 3705545 - R 100 -18.1 -5.95449 | opp_overlap 3705545 3705553 AAAGAAAATAAAAAA GTGCAAAACTAATTA AAA TAATTAGTTTTGCAC TTAATATATATAAAT TERM 4882 3705545 - 3705577 + r 100 -18.1 -3.35465 | opp_overlap 3705545, overlap 3705553 AAAGAAAATAAAAAA GTGCAAAACTAATTA AAA TAATTAGTTTTGCAC TTAATATATATAAAT TERM 4883 3705553 - 3705569 + r 73 -6.7 -4.21098 | opp_overlap 3705545, overlap 3705545 TAAAAAAGTGCAAAA CTAATTA AAA TAATTAG TTTTGCACTTAATAT TERM 4884 3705788 - 3705766 - R 100 -10 -5.24989 | opp_overlap 3705766 TTATATACTAAAAAA GAGATAGTTA TAA CAACTATCTC TTTAACTTACCTGGC TERM 4885 3705766 - 3705788 + r 84 -9.3 -3.76952 | opp_overlap 3705766 TTATATACTAAAAAA GAGATAGTT ATAAC AACTATCTC TTTAACTTACCTGGC TERM 4886 3707525 - 3707541 + r 74 -8.7 -3.05343 | CAGCGGACGAACCTT CCTGAGG AAA CCTTAGG TATTCGGCCTGTGGG TERM 4887 3708114 - 3708124 + r 71 -6.8 -4.15453 | opp_overlap 3708103 GCAACGTGGTTCGGT CCTC CAC GAGG TTTTACCCTCGCTTC TERM 4888 3708350 - 3708361 + r 75 -7.2 -4.2354 | AGGTTCTATTTCACT CCCC TCCC GGGG TTCTTTTCACCTTTC TERM 4889 3708424 - 3708439 + r 81 -10.4 -2.71011 | GTAGTATTTAGCCTT GGGAGG TGGT CCTCCC TGCTTCCCACAAGGT TERM 4890 3708591 - 3708608 + r 76 -8.5 -3.695 | GTTCTGTCCGCAACC CCAAAGA TAAA TCTTTGG TTTGGGCTCTTTCCC TERM 4891 3708735 - 3708750 + r 72 -9 -2.69489 | opp_overlap 3708735 3708737, overlap 3708732 ATTCACTTTACGATA CATGGG GTTT CCCATG TGAGTTTCCTCATTC TERM 4892 3708750 - 3708735 - R 73 -9 -2.79915 | opp_overlap 3708735 3708732, overlap 3708737 ATTCACTTTACGATA CATGGG GTTT CCCATG TGAGTTTCCTCATTC TERM 4893 3709093 - 3709112 + r 75 -9.2 -2.65808 | opp_overlap 3709084 3709081, overlap 3709090 3709090 AAAGGAGGTGATCCA GCCGCAGG TTCT CCTACGGC TACCTTGTTACGACT CLL_A3503 3711762 - 3710863 - | phospholipase, patatin family TERM 4894 3711446 - 3711430 - G 73 -8.7 -3.14146 | CATAATATCAGTTAA GCCTTCC CTT GAAAGGC TTCCAGTGTCAATCA CLL_A3504 3712614 - 3711796 - | protein YqfL TERM 4895 3712681 - 3712709 + H 75 -9.2 -2.5547 | opp_overlap 3712686 3712688 3712693, overlap 3712680 3712684 3712684 3712700 TATTTAATTTTACCA TTATATATTACA TATAT TGTAATATATAA CTTGATATAAAAAAT TERM 4896 3713025 - 3713036 + G 80 -5.8 -5.1286 | opp_overlap 3713016 ACAATAGGCATTCTA CCAC TTAT GTGG TTTTTATACTTTTTG TERM 4897 3713453 - 3713464 + G 77 -2.2 -5.7827 | TAATAAAGATTTTTG GGCA GATA TGTC TTTTTTATTTATATT CLL_A3505 3712989 - 3713735 + | hypothetical protein CLL_A3506 3713750 - 3714937 + | GTP-binding protein TERM 4898 3715082 - 3715114 + T 75 -3.8 -5.52347 | gap 2, opp_overlap 3715082 GCAACAAATAAAAAA GATATCCTATTTAAAT ATA ATTTA--TAGGATATC TTTTTTACTTTTATT TERM 4899 3715114 - 3715082 - T 79 -3.8 -5.80003 | gap 2, opp_overlap 3715082 GCAACAAATAAAAAA GATATCCTATTTAAAT ATA ATTTA--TAGGATATC TTTTTTACTTTTATT TERM 4900 3715145 - 3715169 + T 100 -10.3 -4.44914 | opp_overlap 3715143 3715153, overlap 3715141 AGTGTATATATTATG TCTTTAAATTA AAC TAATTTAAAGA TTATTTTGTTCAATC TERM 4901 3715304 - 3715279 - T 100 -12.1 -6.25578 | opp_overlap 3715279, overlap 3715270 ATGAAATAAAAAAAA TCGTTTCTTTA ATAT TAAAGAAACGA TTTTGGTGGCTCACC TERM 4902 3715279 - 3715304 + T 100 -12.1 -4.2828 | opp_overlap 3715270 3715279 ATGAAATAAAAAAAA TCGTTTCTTTA ATAT TAAAGAAACGA TTTTGGTGGCTCACC motB 3716514 - 3715780 - | chemotaxis MotB protein CLL_A3510 3717295 - 3716519 - | chemotaxis protein MotA TERM 4903 3717573 - 3717536 - R 100 -8 -5.56568 | ATATTACTAAAAAAA GTCCATAAAGAATCTA AATATA TAAATTCTTTACAGAC TTTTAACATTTTTAA CLL_A3511 3718561 - 3717614 - | L-lactate dehydrogenase TERM 4904 3718941 - 3718971 + r 95 -12.8 -3.73914 | opp_overlap 3718946, overlap 3718946 TACTTTTTTATAAAA AAAAAGCTACTGAA AAA TTCAGTAGCTTTTA TTATTGGTGCGTCAT TERM 4905 3718946 - 3718966 + r 100 -12.7 -4.92757 | opp_overlap 3718946, overlap 3718941 TTTTATAAAAAAAAA GCTACTGAA AAA TTCAGTAGC TTTTATTATTGGTGC TERM 4906 3718966 - 3718946 - R 100 -12.7 -6.22802 | opp_overlap 3718946 3718941 TTTTATAAAAAAAAA GCTACTGAA AAA TTCAGTAGC TTTTATTATTGGTGC TERM 4907 3719215 - 3719237 + r 71 -7 -3.99494 | TTAGTTAAAACTGTA CTCCTTTAGC TAT GCTAAGTGAG TTATTATTCAATTGA TERM 4908 3720856 - 3720872 + r 74 -8.7 -3.05343 | CAGCGGACGAACCTT CCTGAGG AAA CCTTAGG TATTCGGCCTGTGGG TERM 4909 3721445 - 3721455 + r 71 -6.8 -4.15453 | opp_overlap 3721434 GCAACGTGGTTCGGT CCTC CAC GAGG TTTTACCCTCGCTTC TERM 4910 3721681 - 3721692 + r 75 -7.2 -4.2354 | AGGTTCTATTTCACT CCCC TCCC GGGG TTCTTTTCACCTTTC TERM 4911 3721755 - 3721770 + r 81 -10.4 -2.71011 | GTAGTATTTAGCCTT GGGAGG TGGT CCTCCC TGCTTCCCACAAGGT TERM 4912 3721922 - 3721939 + r 76 -8.5 -3.695 | GTTCTGTCCGCAACC CCAAAGA TAAA TCTTTGG TTTGGGCTCTTTCCC TERM 4913 3722345 - 3722317 - R 95 -10.5 -3.94 | overlap 3722319 GCAATTTTCAAAGAA CATTTTGAAAGAC TTA GTCTTTCAAAATT GAACAGAATCTACAT TERM 4914 3722343 - 3722319 - R 100 -13.1 -3.55603 | overlap 3722317 AATTTTCAAAGAACA TTTTGAAAGAC TTA GTCTTTCAAAA TTGAACAGAATCTAC TERM 4915 3722453 - 3722472 + r 75 -9.2 -2.65808 | opp_overlap 3722444 3722441, overlap 3722450 3722450 AAAGGAGGTGATCCA GCCGCAGG TTCT CCTACGGC TACCTTGTTACGACT TERM 4916 3724044 - 3724061 + r 81 -5.6 -5.31091 | GACCAAATTTTCGTT GTTGAC TTTCTT GTCAAC TTTTGTTTTATTGTG CLL_A3517 3725603 - 3724587 - | two-component sensor histidine kinase CLL_A3518 3726271 - 3725600 - | DNA-binding response regulator TERM 4917 3726372 - 3726334 - R 95 -9.2 -4.89852 | opp_overlap 3726334 3726332 CTATATCTATAAAAA TAACTACCTTAAATAAAA TTT TATTATCTAAAGTAGTTA TCTATTATTTTATTT CLL_A3519 3728407 - 3726392 - | ABC transporter, permease protein CLL_A3520 3729164 - 3728397 - | bacitracin export ATP-binding protein BceA TERM 4918 3728763 - 3728784 + g 73 -3.1 -5.5112 | ATTTAAAATCTCTTC TATACCTAA TTCT TTAGCTATA TTTTTTATTAATGAA TERM 4919 3729468 - 3729433 - R 100 -8 -5.60993 | gap 1, opp_overlap 3729435 TTCTGTACAAAAAAA GATATTTCC-AAAATAA ATT TTATTTTTAGAAATATC CACCCACTGCACTAT CLL_A3521 3729911 - 3729480 - | transcriptional regulator, MarR family TERM 4920 3730147 - 3730115 - R 73 -6.6 -4.31185 | gap 1, opp_overlap 3730112 3730115 3730114, overlap 3730112 TATAAAAAAATATAA GCTTCTTATTTATAC AAAA ATATA-ATAAGAAGC AGTTTTTTTATAAGT CLL_A3522 3730466 - 3730155 - | thioredoxin CLL_A3523 3731915 - 3730671 - | HD domain protein TERM 4921 3731308 - 3731279 - G 84 -9.5 -3.67622 | opp_overlap 3731277 3731276 3731279, overlap 3731275 CACTTCTAAAATCAA TAGCATATGTCAA CATT TTTACATATGCTA TAATTTCTTCTCTAC TERM 4922 3731279 - 3731308 + g 79 -9.5 -3.17195 | opp_overlap 3731279 3731275, overlap 3731277 3731276 CACTTCTAAAATCAA TAGCATATGTCAA CATT TTTACATATGCTA TAATTTCTTCTCTAC TERM 4923 3731319 - 3731330 + g 70 -3 -5.24129 | opp_overlap 3731327, overlap 3731326 3731327 3731329 TGCTATAATTTCTTC TCTA CTAA TAGA TTTTTTATCAAAAAA TERM 4924 3731327 - 3731349 + g 75 -9.4 -2.6296 | opp_overlap 3731327, overlap 3731319 3731326 3731329 TTTCTTCTCTACTAA TAGATTTTTT ATC AAAAAATCTA ATTAATTCACCTTTA TERM 4925 3731349 - 3731327 - G 78 -9.4 -3.14132 | opp_overlap 3731319 3731327 3731326 3731329 TTTCTTCTCTACTAA TAGATTTTTT ATC AAAAAATCTA ATTAATTCACCTTTA CLL_A3524 3732860 - 3732225 - | hypothetical protein TERM 4926 3732573 - 3732592 + g 86 -9.4 -3.81885 | opp_overlap 3732575, overlap 3732567 TAATTTATCTTTATA TAGCTCAA TAAA TTGAGCTA TTATATGTTTGTATA CLL_A3525 3733465 - 3733073 - | hypothetical protein CLL_A3526 3733898 - 3733467 - | MarR family regulatory protein CLL_A3527 3734375 - 3733917 - | hypothetical protein TERM 4927 3734431 - 3734394 - R 93 -10.1 -4.07568 | opp_overlap 3734394 TTTTCCTCCTTAAAA TAGTTTGCATTAAAACT AAAT AGTTCCTATGCAAACTA TTTTACTACAAAATT TERM 4928 3734560 - 3734518 - R 100 -10.3 -5.19328 | gap 1, opp_overlap 3734521 3734524, overlap 3734521 ACTCTATAACAAAAA CAATAAGGATGTATCAA-AT CAAA ATATTGATACATCCTTATTT CAAGTTATATAAATT TERM 4929 3734521 - 3734557 + r 95 -12 -3.70811 | gap 1, opp_overlap 3734518 3734521, overlap 3734524 CTATAACAAAAACAA TAAGGATGTATCAA-AT CAAA ATATTGATACATCCTTA TTTCAAGTTATATAA TERM 4930 3734557 - 3734521 - R 100 -12 -4.68512 | gap 1, opp_overlap 3734521 3734524, overlap 3734518 CTATAACAAAAACAA TAAGGATGTATCAA-AT CAAA ATATTGATACATCCTTA TTTCAAGTTATATAA TERM 4931 3734524 - 3734554 + r 86 -9.3 -3.97689 | gap 1, opp_overlap 3734521 3734518, overlap 3734521 TAACAAAAACAATAA GGATGTATCAA-AT CAAA ATATTGATACATCC TTATTTCAAGTTATA CLL_A3528 3735687 - 3734761 - | transketolase CLL_A3529 3736516 - 3735704 - | transketolase TERM 4932 3736550 - 3736568 + r 100 -10.4 -5.9218 | opp_overlap 3736550 TTATATTTGAAAAAA TGAGGAAT TAA ATTCCTCA TTTTTTTATTATATA TERM 4933 3736568 - 3736550 - R 100 -10.4 -5.07567 | opp_overlap 3736550 TTATATTTGAAAAAA TGAGGAAT TAA ATTCCTCA TTTTTTTATTATATA CLL_A3530 3737944 - 3736595 - | ascorbate-specific PTS system enzyme IIC TERM 4934 3738006 - 3737988 - R 91 -10.4 -3.55622 | opp_overlap 3737988 TTTAATTTTTGGAAA GTGGTAAT TAA ATTACCAC TTTATTATTTTAAAG TERM 4935 3737988 - 3738006 + r 100 -10.4 -4.67697 | opp_overlap 3737988 TTTAATTTTTGGAAA GTGGTAAT TAA ATTACCAC TTTATTATTTTAAAG CLL_A3531 3738291 - 3738016 - | PTS sysytem, mannitol-specific enzyme II, B component CLL_A3532 3738695 - 3738294 - | phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 CLL_A3533 3740596 - 3738710 - | putative phosphotransferase system mannitol/fructose-specific IIA domain CLL_A3534 3742952 - 3741285 - | oligo-1,6-glucosidase TERM 4936 3743110 - 3743123 + r 70 -2.5 -5.51046 | TACGTTTTTATGACT TTTTA TTAA TAAAA TTTTTTCTGTATTTC CLL_A3535 3744019 - 3743102 - | transcriptional regulator, AraC family TERM 4937 3743661 - 3743704 + g 75 -8.5 -3.50393 | opp_overlap 3743660 3743676 TTAAAAATAAAATGC GGCATCTTTAATTC-ACCATT TAAT AATGGTTGAATTAATGA-GCC TTGTATAGAATCAAA CLL_A3536 3745097 - 3744282 - | hypothetical protein CLL_A3537 3745669 - 3745097 - | RNA polymerase ECF-type sigma factor TERM 4938 3745141 - 3745152 + g 71 -4.4 -4.88646 | overlap 3745137 3745136 TTTCACACTTTTTAT CCTT TGAT AAGG TTTCTTTTAATTTTT TERM 4939 3745371 - 3745403 + g 71 -8.7 -2.93652 | overlap 3745370 TCAATACTTTCATCA TTTGCTTTTTCAAAA ATA TTTTCAAAAGGCAAA GCTTTTTTCTCTTTA TERM 4940 3745864 - 3745884 + r 70 -4.8 -4.87133 | opp_overlap 3745864, overlap 3745859 TCTTTGATTATGAAA TGTACTTA AATCA TAGGTACA TTTTATTTCAAAGAT CLL_A3538 3746957 - 3745959 - | phosphate permease CLL_A3539 3747576 - 3746950 - | hypothetical protein CLL_A3540 3747979 - 3749544 + | hypothetical protein TERM 4941 3749630 - 3749590 - T 85 -5.9 -5.49568 | gap 2, opp_overlap 3749590 AACCTAAAATAAAAA TAACTGTAACTAAGAATTA TTTGT TAA-TCT-AGTTACAGTTA TTTTTTAGCATTATT TERM 4942 3749590 - 3749630 + T 80 -5.9 -5.11937 | gap 2, opp_overlap 3749590 AACCTAAAATAAAAA TAACTGTAACTAAGAATTA TTTGT TAA-TCT-AGTTACAGTTA TTTTTTAGCATTATT CLL_A3541 3750067 - 3749651 - | hypothetical protein CLL_A3542 3751625 - 3750195 - | membrane associated histidine kinase with hamp domain TERM 4943 3751589 - 3751604 + g 70 -4.8 -4.78029 | overlap 3751578 TGCTTAAAATTAATG TTATTC CAAA GAATAA TTTTAGTTTTATTGA CLL_A3543 3752290 - 3751625 - | alkaline phosphatase synthesis transcriptional regulatory proteinphoP TERM 4944 3752153 - 3752166 + g 70 -5.3 -4.5115 | opp_overlap 3752153 ATCTAATATAATAAG GTCAA AAAT TTGAC TTTTAAATTTTTCTA TERM 4945 3752600 - 3752554 - H 90 -7.7 -5.03145 | opp_overlap 3752554 3752557 TAATCTCCTAAAAAA TAATAAAACCAACTAATTATT GTGTA AAAATTTAGTTGATTTTATTA TTTCCATAAATTATT TERM 4946 3752700 - 3752739 + H 100 -11.2 -5.31275 | gap 1 TTAAAATCTGTAGTA TTATTCAATTGTGGT-AAT AAT ATTGACCATAATTGAATAA TTTTTTATAGTAAGA TERM 4947 3753526 - 3753507 - g 73 -4.4 -5.18726 | gap 1 CGGTTACAATAAAAA GGATGCTAA ATG TTA-CATCC AATGTTTCGATCCAA TERM 4948 3753574 - 3753554 - g 73 -5.5 -4.68424 | overlap 3753546 3753556 CAACTTATTTAAAAA GCTTTAAAG AAA CTTTAAACC CTAAATGTAAGTTAG CLL_A3544 3752860 - 3753960 + | glycerophosphoryl diester phosphodiesterase TERM 4949 3754077 - 3754033 - T 100 -11.1 -5.35815 | gap 1, opp_overlap 3754036, overlap 3754036 CAGATTAAATAAAAA CAAGTTACCGATAGTTAAGA TTTTCT TC-TAACTATCGGTAACTTT TATATACTAATAATT TERM 4950 3754036 - 3754074 + T 100 -12.8 -4.58424 | gap 1, opp_overlap 3754033 3754036 ATTAAATAAAAACAA GTTACCGATAGTTAAGA TTTTCT TC-TAACTATCGGTAAC TTTTATATACTAATA TERM 4951 3754074 - 3754036 - T 100 -12.8 -4.74052 | gap 1, opp_overlap 3754036, overlap 3754033 ATTAAATAAAAACAA GTTACCGATAGTTAAGA TTTTCT TC-TAACTATCGGTAAC TTTTATATACTAATA CLL_A3545 3755429 - 3754131 - | putative ATP-dependent RNA helicase RhlE TERM 4952 3754310 - 3754329 + g 70 -2.9 -5.31545 | opp_overlap 3754324, overlap 3754324 TTCTTTCAAATTCAA CATTCTT CATTAC AGGAATG TTTTTTCCTATTGTT TERM 4953 3754573 - 3754561 - G 70 -6.3 -4.08216 | opp_overlap 3754561 3754560 3754569 3754570, overlap 3754570 TTACCTTCTTTAAAA TTGCT TAA AGCAA GTTGTCTTGCATTTT TERM 4954 3754720 - 3754701 - G 70 -8 -3.1203 | overlap 3754699 TAATGACTTAATAGA TTCATCTT TAAG AAGATGAA CAAGTAAAGATTTCT TERM 4955 3755721 - 3755742 + r 95 -11.7 -3.32343 | opp_overlap 3755721 AGAAATATCAAAAAA GGTTGTAGT TTAA ACTACAACC TTATAACAATCTAAA TERM 4956 3755742 - 3755721 - R 100 -11.7 -5.34055 | opp_overlap 3755721 AGAAATATCAAAAAA GGTTGTAGT TTAA ACTACAACC TTATAACAATCTAAA CLL_A3546 3755911 - 3755759 - | hypothetical protein TERM 4957 3755811 - 3755827 + g 73 -3 -5.38054 | gap 1, overlap 3755811 GCTGCACATCTTGTT GG-TTCG TTAT CGAATCC TTTTTCTTTGTAGAA CLL_A3547 3756578 - 3756087 - | hypothetical membrane protein TERM 4958 3756654 - 3756611 - R 100 -7.6 -5.96894 | gap 1, opp_overlap 3756611 ACTTAAATAAAAAAA TGCGTTATATCGACGA-CA AGTGGTA TGACCGTCGGTACAACGCA TTGCTTTCATAAGTA CLL_A3548 3757229 - 3756750 - | hypothetical protein CLL_A3549 3758049 - 3757408 - | hypothetical protein TERM 4959 3758431 - 3758414 - R 83 -7 -5.07523 | opp_overlap 3758414 TATATATAAATAAAA GGGATC GTTGTA GATCCC TTATTAGAAAACTAT CLL_A3550 3758940 - 3758443 - | SEC-C domain protein TERM 4960 3758530 - 3758544 + g 72 -5.8 -4.50298 | opp_overlap 3758529, overlap 3758520 ATTATTTCTAATGAT TTTAGA ATC TCTAAA TTGTTTTTGAATTTC CLL_A3551 3759797 - 3759006 - | metallo-beta-lactamase family protein TERM 4961 3759547 - 3759561 + g 71 -7.2 -3.74345 | opp_overlap 3759547 AATGATTCCATAGCA TTCCAA GTG TTGGAA TTTGCATATATAGGT murA 3761094 - 3759832 - | UDP-N-acetylglucosamine 1-carboxyvinyltransferase CLL_A3553 3761488 - 3762027 + | hypothetical protein CLL_A3554 3762202 - 3762678 + | dUTPase superfamily TERM 4962 3762667 - 3762689 + F 100 -10.7 -5.64421 | opp_overlap 3762667 AATACTTACGAAAAA GTAGCTCTT TAATT AAGAGCTAC TTTTTTCTTTACAAT TERM 4963 3762689 - 3762667 - f 100 -10.7 -4.76644 | opp_overlap 3762667 AATACTTACGAAAAA GTAGCTCTT TAATT AAGAGCTAC TTTTTTCTTTACAAT CLL_A3555 3762867 - 3763298 + | hypothetical protein TERM 4964 3763696 - 3763677 - g 75 -7.2 -4.21319 | opp_overlap 3763682 AGCAAGCTTAATAAA GATGCTAT TGTT ATAGCACC TAAGGGCTATAAAAA CLL_A3556 3763356 - 3764174 + | metallo-beta-lactamase domain protein TERM 4965 3764195 - 3764216 + F 72 -6.1 -4.46267 | opp_overlap 3764195 3764197 3764203 TTCTTTGTTCATATA TATTTAAAT ATTT ATTTAAATA TTTTAGTTAACTTGT CLL_A3557 3764294 - 3765499 + | subtilase family protein TERM 4966 3765510 - 3765542 + T 100 -9.5 -5.96894 | opp_overlap 3765510 CCTAAATTATAAAAA TAATAAATACTATAA ATA TTTTAGTATTTATTA TTTTTTTATTTGGCT TERM 4967 3765542 - 3765510 - T 100 -9.5 -5.04325 | opp_overlap 3765510 CCTAAATTATAAAAA TAATAAATACTATAA ATA TTTTAGTATTTATTA TTTTTTTATTTGGCT TERM 4968 3765554 - 3765586 + T 74 -4.9 -5.13527 | ATTATTTTTTTATTT GGCTCTATATTAGCA GAA TGTTGATACAGATCC TTTTATTTATTGATT CLL_A3558 3766780 - 3765593 - | peptidase, M23/M37 family TERM 4969 3765976 - 3765987 + g 70 -5.8 -4.3014 | AAAATGTTACTTTAG CTCC AATT GGAG TTTTGCTACCTCTAT TERM 4970 3766343 - 3766361 + g 75 -7.6 -4.02315 | opp_overlap 3766346, overlap 3766346 3766353 ATCAAGTACAGAATC TAAGTTTA TAT TAAACTTA TTTAAATTTTTCATT CLL_A3559 3766956 - 3767945 + | DNA replication protein DnaD TERM 4971 3768436 - 3768426 - g 71 -2.6 -5.4505 | opp_overlap 3768426 TTCTCCAAGAAAAAA TATT GAA AATA TTTTAGAATACGTTT TERM 4972 3768764 - 3768730 - g 73 -7.5 -3.7511 | TTTTCTATAACAGAA TTGTTTAATATTATT AATAA AAGAATATTAAACAA AAAGAAAATGCTTAT CLL_A3560 3767938 - 3768918 + | DNA replication protein DnaC TERM 4973 3768970 - 3768912 - T 79 -3.7 -5.68039 | gap 2, opp_overlap 3768926 3768950, overlap 3768926 3768950 AAATCTACAAAAAAA TAGAT-AATA-AAAAATGTAGCTTCTAAT ATT ATTAGAAGCTACATTTATATATAAATATA GTTATTGACTTCAAA TERM 4974 3768926 - 3768954 + T 100 -16.3 -4.14392 | opp_overlap 3768926 3768912 3768950, overlap 3768950 ATAGATAATAAAAAA TGTAGCTTCTAAT ATT ATTAGAAGCTACA TTTATATATAAATAT TERM 4975 3768954 - 3768926 - T 100 -16.3 -5.62045 | opp_overlap 3768926 3768950, overlap 3768912 3768950 ATAGATAATAAAAAA TGTAGCTTCTAAT ATT ATTAGAAGCTACA TTTATATATAAATAT TERM 4976 3768995 - 3769011 + T 86 -9.5 -3.90588 | opp_overlap 3768995 TTCAAAAACAAAAAA CTCTAGT AAA ACTAGAG TTTAATTGGCGACTC TERM 4977 3769011 - 3768995 - T 100 -9.5 -5.93252 | opp_overlap 3768995 TTCAAAAACAAAAAA CTCTAGT AAA ACTAGAG TTTAATTGGCGACTC TERM 4978 3769989 - 3770002 + T 93 -6.7 -5.83211 | GTCTTAACCGCTTGA CCAAG GAGC CTTGG TTTTTTGTTTTCGTG TERM 4979 3770063 - 3770074 + T 70 -4.4 -4.97888 | opp_overlap 3770063 CATAATTTTATAATA TGTG TCAA CACA TTTTTCGATTTTTTT CLL_A3572 3770697 - 3770113 - | hypothetical protein TERM 4980 3770279 - 3770237 - G 70 -6 -4.26903 | overlap 3770241 TTGATTTCATTAAAA CAAATATTAAAAAAATTTTC TTC AAAAACTTTATTAATATTTA TACTATAACCCTCTT TERM 4981 3771041 - 3771070 + G 71 -3.9 -5.14563 | gap 1, opp_overlap 3771064 3771067, overlap 3771046 AATATCTGTTCTCCA TTTGTTAATTTTCA TAG TGAAAAT-AATAAA TTTTTTACTAAAACA TERM 4982 3771310 - 3771287 - g 84 -3.3 -5.88061 | AAAAAATCAAAAAAA TTCATTATT AATACA AACAATGAA GAATTTAAAGAATTT CLL_A3573 3770861 - 3772105 + | hypothetical protein TERM 4983 3772155 - 3772204 + T 75 -9.7 -2.72121 | opp_overlap 3772155 3772159, overlap 3772154 3772159 TTAACAATAGAAACA TAAAGCCATATCAAAGTAT AAGCATTAAACA CTACTTTGATATGGCTTTA ATTAATATTATTTTT TERM 4984 3772204 - 3772155 - T 91 -10.4 -3.76767 | gap 1, opp_overlap 3772155 3772154 3772159, overlap 3772159 TTAACAATAGAAACA TAAAGCCATATCAAAGTATAAGC ATTAA ACAC-TACTTTGATATGGCTTTA ATTAATATTATTTTT TERM 4985 3772200 - 3772159 - T 75 -6.8 -4.45693 | gap 1, opp_overlap 3772159 3772155 3772154, overlap 3772155 CAATAGAAACATAAA GCCATATCAAAGTATAAGC ATTAA ACAC-TACTTTGATATGGC TTTAATTAATATTAT CLL_A3574 3772961 - 3772212 - | acyl-ACP thioesterase TERM 4986 3773010 - 3772970 - R 83 -9.5 -3.56325 | TGCCCATAATTATAA TATTACTAAAATAAAAA TCATTTC TTTTTACTTTAGTAATA GTACCCCCTTTCCTT TERM 4987 3773152 - 3773130 - R 100 -11.4 -5.93252 | opp_overlap 3773130 3773128 TTCAAAAACAAAAAA GACCATTGCA TTT TGCAATAGTC TCTTCCTTTAAGTAT TERM 4988 3773130 - 3773152 + r 82 -9.2 -3.35011 | opp_overlap 3773130, overlap 3773128 TTCAAAAACAAAAAA GACCATTGCA TTT TGCAATAGTC TCTTCCTTTAAGTAT CLL_A3575 3773349 - 3773167 - | hypothetical protein purA 3774738 - 3773452 - | adenylosuccinate synthetase TERM 4989 3775825 - 3775792 - g 71 -3.9 -5.16071 | overlap 3775802 3775821 AACTATGAATAAAAA TGGAATAATATTTGC TATG GCAAATCCAACTCCA GAAATATTCCCTGAA CLL_A3577 3774962 - 3776134 + | NAD-dependent malic enzyme TERM 4990 3776180 - 3776222 + T 71 -6.6 -4.02424 | opp_overlap 3776180 3776185, overlap 3776185 AATACAATCTAAAAC GAAAAGCATCGTAAAT AGTTCTTATGA ATTTACGATGCTTTTA TTTATCCTAATTAAT TERM 4991 3776217 - 3776185 - T 77 -6.5 -4.69549 | opp_overlap 3776180 3776185, overlap 3776180 AATCTAAAACGAAAA GCATCGTAAAT AGTTCTTATGA ATTTACGATGC TTTTATTTATCCTAA TERM 4992 3776185 - 3776217 + T 80 -6.5 -5.02323 | opp_overlap 3776185 3776180, overlap 3776180 AATCTAAAACGAAAA GCATCGTAAAT AGTTCTTATGA ATTTACGATGC TTTTATTTATCCTAA proC 3777352 - 3776552 - | pyrroline-5-carboxylate reductase TERM 4993 3777875 - 3777851 - g 78 -7.3 -4.46254 | TTAATATAGAAGAAA TCTCTCTTTTC AAA GAAAAAAAAGA AATTAAAATTAATAT CLL_A3579 3777568 - 3777954 + | leucine rich repeat gene family protein TERM 4994 3778088 - 3778117 + T 77 -6.8 -4.68593 | opp_overlap 3778091 3778112, overlap 3778106 TTCTCAATTTTTCAA TAATAATATATA TTACCT TATATATTATTA TTTTTAACTAGTAAA dnaB 3779494 - 3778157 - | replicative DNA helicase TERM 4995 3779575 - 3779550 - R 80 -8.4 -4.28432 | opp_overlap 3779545 3779550 3779553 AACTTTAATTTAAAA TAAGCTTCCT AGTTCA AGGAAGCCTA TTTCATTATTCAAAA lonC 3781473 - 3779581 - | ATP-dependent protease, Lon family TERM 4996 3780717 - 3780737 + g 70 -6.2 -4.22375 | opp_overlap 3780707 ATATAGGATCATGTA CTGATCCT AATAA AGGATTAG TTATTTCTCTTGGAT TERM 4997 3781495 - 3781514 + r 75 -5.8 -4.92783 | TCCCCCTTATTATTG TGGAAGTA TATT TACTTTCA TTTTTGTACTAACTT rplI 3781932 - 3781489 - | ribosomal protein L9 CLL_A3583 3783875 - 3781935 - | DHH family protein CLL_A3584 3784219 - 3783899 - | hypothetical protein TERM 4998 3784394 - 3784377 - R 100 -11.3 -5.55769 | opp_overlap 3784376 3784375 CTGTATAATAAAAAA CCCCTGA TTTC TCAGGGG AGTAATTTTATTACT TERM 4999 3784397 - 3784436 + r 76 -8.2 -3.75163 | opp_overlap 3784400, overlap 3784396 3784394 3784395 3784400 GATTTCTCAGGGGAG TAATTTTATTACTATTCA GTTG TGAATGGTAATAAAGCTA TGTTTCTTGCTCTCT TERM 5000 3784400 - 3784433 + r 79 -9.9 -2.65632 | opp_overlap 3784400, overlap 3784396 3784394 3784397 3784395 TTCTCAGGGGAGTAA TTTTATTACTATTCA GTTG TGAATGGTAATAAAG CTATGTTTCTTGCTC rpsR 3784659 - 3784408 - | ribosomal protein S18 ssb 3785124 - 3784681 - | single-strand binding protein rpsF 3785428 - 3785138 - | ribosomal protein S6 CLL_A3588 3785726 - 3785535 - | hypothetical protein TERM 5001 3785654 - 3785681 + g 71 -2.8 -5.54079 | gap 1, opp_overlap 3785658, overlap 3785658 CTAACCTGACAATTT CAA-ACTCATATG AAC CACATGGGTGTTG TTTTTTCATTTTTAC CLL_A3589 3786619 - 3785726 - | mechanosensitive ion channel family protein TERM 5002 3785951 - 3785969 + g 73 -9 -2.5604 | opp_overlap 3785960, overlap 3785950 3785960 TATGTCTTCATTATC TTGTTCAA AGT TTGAACAA ACTTCTTTTATTATG CLL_A3590 3786885 - 3786646 - | hypothetical protein CLL_A3591 3787174 - 3787827 + | LysE type translocator superfamily TERM 5003 3788527 - 3788512 - g 80 -9 -3.66646 | AATAGCTCATGCAAA CCCCTT ATTC AAGGGG GTACTGGTAGTTCTT CLL_A3592 3787843 - 3789000 + | cysteine desulfurase family protein TERM 5004 3789091 - 3789056 - f 100 -16.4 -4.64334 | opp_overlap 3789056 AAGTCTTGAATAAAA CCTCCCTTTAAAGGAA ATAA TTTCTTTAAAGGGAGG TTTTGTATGAAAAAT TERM 5005 3789056 - 3789091 + F 100 -18.6 -4.52857 | opp_overlap 3789056 AAGTCTTGAATAAAA CCTCCCTTTAAAGGAA ATAA TTTCTTTAAAGGGAGG TTTTGTATGAAAAAT CLL_A3593 3789098 - 3789700 + | putative sporulation protein TERM 5006 3789986 - 3789950 - T 100 -15.6 -4.57073 | opp_overlap 3789950 CATTTGCTGCAAAAA TAGCCAATTTAAAATA AATTA TATTTTAAATTGGCTA TTTTAACTTTAATGA TERM 5007 3789950 - 3789986 + T 100 -15.6 -4.37711 | opp_overlap 3789950 CATTTGCTGCAAAAA TAGCCAATTTAAAATA AATTA TATTTTAAATTGGCTA TTTTAACTTTAATGA CLL_A3594 3790518 - 3790006 - | hypothetical protein TERM 5008 3790541 - 3790556 + r 72 -6.2 -4.4296 | opp_overlap 3790541 ATTCCTTTCACTAAA TGTTTC ACGT GAAACA TTTTACTGTATATTA CLL_A3595 3791437 - 3790559 - | stage 0 sporulation protein J TERM 5009 3790695 - 3790709 + g 72 -7.2 -4.04576 | AGTTGATTACGTACA TCCTTA TAA TAAGGA TTTAATTCTCTCAAT CLL_A3596 3792214 - 3791450 - | sporulation initiation inhibitor protein soj TERM 5010 3792351 - 3792305 - R 100 -8.5 -5.83226 | gap 1, opp_overlap 3792307 3792310 3792319 AATGTAATAAAAAAA TAGCATATAAACT-TGAAAAAA TAAA TTTTTTCTCAGTTTATATACTA TTAAGAATAAAAAAC CLL_A3597 3793176 - 3792397 - | protein YyaA TERM 5011 3792773 - 3792787 + g 76 -4.3 -5.31545 | AATCTTAGTTTATTA GCAAT AGTAG ATTGC TTTTTTCCTATTCTT gidB 3794126 - 3793407 - | 16S rRNA methyltransferase GidB gidA 3796022 - 3794142 - | tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA TERM 5012 3794224 - 3794237 + g 70 -5.3 -4.58303 | ATACGTGATGCCTGA CCTAT ACTT ATAGG TTTTATACTATTTAA TERM 5013 3795407 - 3795418 + g 70 -5.8 -4.32048 | TTCTATTAATTCTTG CTGG AGTT CCAG TTTTAAATCTTCTTA trmE 3797402 - 3796032 - | tRNA modification GTPase TrmE TERM 5014 3797707 - 3797729 + r 80 -6.3 -5.10004 | opp_overlap 3797708, overlap 3797708 AATTAAAACCAAAAA AGAAAGCCT CATCA AGGCTTTCC TTTTTAATTCTTTTT TERM 5015 3797708 - 3797728 + r 89 -9.8 -3.62342 | opp_overlap 3797708, overlap 3797707 ATTAAAACCAAAAAA GAAAGCCT CATCA AGGCTTTC CTTTTTAATTCTTTT TERM 5016 3797728 - 3797708 - R 100 -10.5 -5.48054 | opp_overlap 3797708 3797707 ATTAAAACCAAAAAA GAAAGCCTC ATC AAGGCTTTC CTTTTTAATTCTTTT CLL_A3601 3798359 - 3797733 - | protein jag TERM 5017 3797919 - 3797934 + g 79 -4.7 -5.42131 | ATTTGCAACATTCTT GAGAG TTTCTT CTCTC TTTTTTCTATAATTC CLL_A3602 3799186 - 3798407 - | membrane protein OxaA rnpA 3799770 - 3799393 - | ribonuclease P protein component TERM 5018 3799727 - 3799747 + g 87 -2.7 -6.19443 | GATTTCCCTCTTCTA TATACAATT ATA AATTCTATA TTTTTTTTTAATCTA TERM 5019 3799831 - 3799815 - R 87 -7.2 -5.252 | opp_overlap 3799806 3799815 CATTTGCAGAAAAAA GGCCAC TTAAT GCGGCC CTTATGCTGTTAATT rpmH 3799967 - 3799833 - | ribosomal protein L34 SEQUENCE gi|187935795|ref|NC_010680.1| Clostridium botulinum B str. Eklund 17B plasmid pCLL, complete sequence (length 47642) CLL_0001 10 - 270 + | cell wall binding repeat domain protein TERM 1 274 - 309 + F 100 -15.2 -4.02132 | opp_overlap 274 279 283, overlap 279 TGGATTTATTAATAA TAAAATAAACTAATGA TTTT TCATTAGTTTATTTTA TTTGTAAATTTGGAG TERM 2 309 - 274 - f 100 -15.2 -3.73647 | opp_overlap 274 279, overlap 279 283 TGGATTTATTAATAA TAAAATAAACTAATGA TTTT TCATTAGTTTATTTTA TTTGTAAATTTGGAG TERM 3 304 - 279 - f 100 -10.7 -4.92757 | opp_overlap 274 279, overlap 274 283 TTATTAATAATAAAA TAAACTAATGA TTTT TCATTAGTTTA TTTTATTTGTAAATT TERM 4 279 - 304 + F 100 -10.7 -5.01553 | opp_overlap 279 274 283, overlap 274 TTATTAATAATAAAA TAAACTAATGA TTTT TCATTAGTTTA TTTTATTTGTAAATT TERM 5 300 - 283 - f 83 -7.1 -4.96427 | opp_overlap 279 274, overlap 279 274 TAATAATAAAATAAA CTAATGA TTTT TCATTAG TTTATTTTATTTGTA CLL_0002 332 - 520 + | hypothetical protein CLL_0003 543 - 704 + | hypothetical protein CLL_0004 717 - 953 + | hypothetical protein TERM 6 1003 - 964 - f 77 -6.6 -4.64992 | opp_overlap 967, overlap 958 966 967 TTTAAAAAACATAAA TACTGTGAGAGTTTATTT TAAA AAATATACTCTCACATTT ATTGAGGGATAATAT TERM 7 1001 - 966 - f 86 -9.2 -3.91191 | opp_overlap 967, overlap 964 958 967 TAAAAAACATAAATA CTGTGAGAGTTTATTT TAAA AAATATACTCTCACAT TTATTGAGGGATAAT TERM 8 967 - 1000 + F 100 -12.7 -4.16016 | opp_overlap 966 964 958 967 AAAAAACATAAATAC TGTGAGAGTTTATTT TAAA AAATATACTCTCACA TTTATTGAGGGATAA TERM 9 1000 - 967 - f 91 -12.7 -2.92275 | opp_overlap 967, overlap 966 964 958 AAAAAACATAAATAC TGTGAGAGTTTATTT TAAA AAATATACTCTCACA TTTATTGAGGGATAA TERM 10 1114 - 1136 + G 100 -6.5 -5.86965 | opp_overlap 1110 1114 CTAATCAGAAATTAA TACTATTAA GTACA TTAATAGTA TTTTTTTTAGTAACT CLL_0005 1017 - 3236 + | type IV secretory pathway, VirD4 component TERM 11 3631 - 3617 - g 75 -7.2 -4.12188 | opp_overlap 3616 3602 3617 3619, overlap 3626 TCATGATGCTTAAAA TAGACA CAA TGTCTA CTTTAGCCATACAAG CLL_0006 3241 - 5376 + | hypothetical protein CLL_0007 5377 - 5652 + | hypothetical protein TERM 12 5663 - 5685 + F 100 -13.6 -4.36595 | opp_overlap 5663 TTTAAATTAGAAAAA CCATCACATA TTA TATGTGATGG TTTTAAATTTAAATA TERM 13 5685 - 5663 - f 100 -13.6 -5.04325 | opp_overlap 5663 TTTAAATTAGAAAAA CCATCACATA TTA TATGTGATGG TTTTAAATTTAAATA TERM 14 5699 - 5745 + F 95 -10.7 -4.17556 | opp_overlap 5694 5699 5703, overlap 5703 GGTTTTAAATTTAAA TAAATTCTAATGTTTAGAT TACACTTGC ATCTAAATATTAGAATTTA TTTATTGGAGGTGTA TERM 15 5745 - 5699 - f 78 -8.5 -3.84451 | gap 1, opp_overlap 5699 5703, overlap 5694 5703 GGTTTTAAATTTAAA TAAATTCTAATGTTTAGATTAC ACTT GCA-TCTAAATATTAGAATTTA TTTATTGGAGGTGTA TERM 16 5703 - 5741 + F 79 -7.1 -4.67607 | opp_overlap 5699 5694 5703, overlap 5699 TTAAATTTAAATAAA TTCTAATGTTTAGAT TACACTTGC ATCTAAATATTAGAA TTTATTTATTGGAGG TERM 17 6391 - 6362 - g 88 -5.3 -5.70761 | opp_overlap 6364, overlap 6365 AAAAGAAAATAAAAA TATTATTTAAATT AAAT AATTTAAATACTA AACTAATATAATTTG CLL_0008 5764 - 6402 + | hypothetical protein TERM 18 6575 - 6599 + G 93 -12.3 -2.93382 | opp_overlap 6573, overlap 6577 TCAATTAGGAAAGGT GATGGATACGA AGC TTGTATCCATC TATATGAGTATCAAA TERM 19 6577 - 6597 + G 76 -9.1 -3.01912 | opp_overlap 6573, overlap 6575 AATTAGGAAAGGTGA TGGATACGA AGC TTGTATCCA TCTATATGAGTATCA TERM 20 7936 - 7922 - g 75 -5.7 -4.64861 | CTTGTTGAAAAGAAA GCCTT TGATG AAGGC AGAAAAACAACTATG CLL_0009 6458 - 8371 + | hypothetical protein CLL_0010 8373 - 9053 + | hypothetical protein TERM 21 9069 - 9092 + F 100 -12.6 -5.44721 | AAATTAGATTTTGAA CTGGATTAAG ATAA CTTAATCCAG TTTTTTTAAGGTGGT CLL_0011 9114 - 10283 + | probable cell wall-binding protein CLL_0012 10302 - 11114 + | hypothetical protein TERM 22 11153 - 11131 - f 100 -10.8 -4.66163 | opp_overlap 11131, overlap 11143 11144 ATTTTTACCTAAAAA CTTTGTAAAA AAC TTTTACAAAG TATGTAAAAAGTATG TERM 23 11131 - 11153 + F 82 -10.8 -2.88249 | opp_overlap 11131 11143 11144 ATTTTTACCTAAAAA CTTTGTAAAA AAC TTTTACAAAG TATGTAAAAAGTATG TERM 24 11241 - 11223 - f 75 -7.4 -4.25283 | opp_overlap 11239, overlap 11225 ATGTCCCCACGAAAA CAGTAGGC TTT GCCTACTT CCCCACCTTGTGTGG TERM 25 11239 - 11225 - f 90 -10 -3.73042 | overlap 11223 GTCCCCACGAAAACA GTAGGC TTT GCCTAC TTCCCCACCTTGTGT TERM 26 11239 - 11262 + F 73 -7.5 -3.70068 | gap 1, opp_overlap 11223, overlap 11255 AGTAGGCTTTGCCTA CT-TCCCCAC CTTGT GTGGGGACAG TTTCCCCTTATGCTC TERM 27 11286 - 11312 + F 76 -6.1 -4.73388 | gap 1, opp_overlap 11286, overlap 11277 TATGCTCTTAATTAA TTTTAGTTAGGT ATTT ACC-AACTAAAA TTTTTGGTCAAGCTT CLL_0013 11397 - 11672 + | hypothetical protein CLL_0014 11678 - 12088 + | hypothetical protein CLL_0015 12102 - 13241 + | hypothetical protein TERM 28 14146 - 14125 - g 75 -7.5 -4.02535 | opp_overlap 14117, overlap 14117 TTACAAGGAATGAAA TTCTTAAAT GTAG ATTTAAGAA ATGCAAATTTTAAAA CLL_0016 13267 - 14388 + | hypothetical protein CLL_0017 14453 - 14968 + | hypothetical protein CLL_0018 14991 - 15341 + | IPT/TIG domain containing protein CLL_0019 15355 - 15705 + | single-strand binding protein TERM 29 15751 - 15713 - f 75 -9.2 -2.6961 | opp_overlap 15718, overlap 15718 15722 GTAAATAATATTAAT TAAAATAAATCACTAATT TTA ATTTAGTGATTTATTTTT TATCTAAAAAACATG TERM 30 15746 - 15718 - f 86 -9.1 -4.49337 | opp_overlap 15718, overlap 15713 15722 TAATATTAATTAAAA TAAATCACTAATT TTA ATTTAGTGATTTA TTTTTTATCTAAAAA TERM 31 15718 - 15746 + F 100 -9.1 -5.36441 | opp_overlap 15713 15718 15722 TAATATTAATTAAAA TAAATCACTAATT TTA ATTTAGTGATTTA TTTTTTATCTAAAAA TERM 32 15742 - 15722 - f 73 -5.5 -4.78981 | opp_overlap 15718, overlap 15718 15713 ATTAATTAAAATAAA TCACTAATT TTA ATTTAGTGA TTTATTTTTTATCTA TERM 33 15847 - 15827 - f 100 -8.3 -6.37666 | overlap 15835 ATAAAATAAAAAAAA GGCAGTAAC TAA GTTACCACC ATATCTCGCAAGTTA CLL_0020 15907 - 16317 + | hypothetical protein CLL_0021 16398 - 16556 + | hypothetical protein CLL_0022 16572 - 16883 + | hypothetical protein TERM 34 16903 - 16872 - f 95 -10.4 -4.13995 | opp_overlap 16876 16880, overlap 16873 16876 CTTTTAGAAATTAAA TTAACCAATTAAAG AAAA CTTTAATTGGTTAT AAAAAAATATATGGG TERM 35 16902 - 16873 - f 100 -13.9 -3.07915 | opp_overlap 16876 16880, overlap 16872 16876 TTTTAGAAATTAAAT TAACCAATTAAAG AAAA CTTTAATTGGTTA TAAAAAAATATATGG TERM 36 16899 - 16876 - f 95 -11.2 -3.67121 | opp_overlap 16876 16880, overlap 16873 16872 TAGAAATTAAATTAA CCAATTAAAG AAAA CTTTAATTGG TTATAAAAAAATATA TERM 37 16876 - 16899 + F 93 -11.2 -3.29829 | opp_overlap 16873 16872 16876, overlap 16880 TAGAAATTAAATTAA CCAATTAAAG AAAA CTTTAATTGG TTATAAAAAAATATA CLL_0023 16928 - 17137 + | hypothetical protein CLL_0024 17176 - 17490 + | hypothetical protein CLL_0025 17872 - 18018 + | hypothetical protein CLL_0026 18049 - 18285 + | hypothetical protein CLL_0027 18382 - 18597 + | hypothetical protein CLL_0028 18671 - 18958 + | hypothetical protein TERM 38 18979 - 19012 + F 71 -5.4 -4.62302 | opp_overlap 18979 GATATCTATAAAAAA GGTAGTGAAAATTT ATATAA ATATTTACACTACC TTTTTACAAATATTA TERM 39 19012 - 18979 - f 81 -5.4 -5.29782 | opp_overlap 18979 GATATCTATAAAAAA GGTAGTGAAAATTT ATATAA ATATTTACACTACC TTTTTACAAATATTA TERM 40 19101 - 19151 + F 100 -10.9 -4.16943 | opp_overlap 19101, overlap 19110 AAGTAGTATAATTTA TCTATAAAGTGTCTATTAAAGTA AAGTG TGTTTTTATAGACATTTTATAGA TTTTAAAATATGAAC TERM 41 19305 - 19272 - f 100 -15.7 -2.73483 | opp_overlap 19272 19274 19280, overlap 19274 19280 ACTTTATCTTAATTA TATTATAACGTACTT TTAA AAGTACGTTATAATA TAATTAAGATAAAGG TERM 42 19272 - 19305 + F 100 -15.7 -2.73364 | opp_overlap 19272 19274 19280, overlap 19274 19280 ACTTTATCTTAATTA TATTATAACGTACTT TTAA AAGTACGTTATAATA TAATTAAGATAAAGG TERM 43 19274 - 19303 + F 100 -13.9 -2.91274 | opp_overlap 19272 19274 19280, overlap 19272 19280 TTTATCTTAATTATA TTATAACGTACTT TTAA AAGTACGTTATAA TATAATTAAGATAAA TERM 44 19303 - 19274 - f 100 -13.9 -2.91274 | opp_overlap 19274 19272 19280, overlap 19272 19280 TTTATCTTAATTATA TTATAACGTACTT TTAA AAGTACGTTATAA TATAATTAAGATAAA TERM 45 19280 - 19297 + F 75 -8.5 -3.49858 | opp_overlap 19274 19272 19280, overlap 19274 19272 TTAATTATATTATAA CGTACTT TTAA AAGTACG TTATAATATAATTAA TERM 46 19297 - 19280 - f 75 -8.5 -3.49858 | opp_overlap 19280 19274 19272, overlap 19274 19272 TTAATTATATTATAA CGTACTT TTAA AAGTACG TTATAATATAATTAA CLL_0029 19530 - 19721 + | hypothetical protein CLL_0030 19743 - 19922 + | putative PemI CLL_0031 19906 - 20178 + | putative bacteriophage protein homolog CLL_0032 20484 - 20612 + | hypothetical protein TERM 47 20726 - 20774 + T 87 -6.5 -5.40072 | opp_overlap 20731, overlap 20731 CGTATGTAGGTTTAA TAAAATAATAATATTTTAATCAA ACT TTATTTAAAATATCATTATTTTA TTTTTTTGCCACAAA TERM 48 20769 - 20731 - T 77 -6.4 -4.64676 | opp_overlap 20731 20726 GTAGGTTTAATAAAA TAATAATATTTTAATCAA ACT TTATTTAAAATATCATTA TTTTATTTTTTTGCC ha70 22762 - 20882 - | haemagglutinin component HA70 ha17 23216 - 22776 - | haemagglutinin component HA17 TERM 49 23127 - 23139 + g 73 -7.7 -3.70902 | opp_overlap 23127 TGAAAATGTTAATGA TCCTG ATA CAGGA TTTAAATATAAAGAA ha33 24157 - 23279 - | hemagglutinin component HA33 TERM 50 24841 - 24831 - g 71 -4 -5.14477 | GATATAGCTAAAAAA CTTA ATA TAAG TCGTCAATCTGTATA botR 24384 - 24923 + | transcriptional regulator BotR, P-21 TERM 51 25476 - 25464 - g 75 -3.5 -5.52096 | opp_overlap 25464, overlap 25457 AAATCTAATAAAAAA TTAAA TTC TTTAA TTTCAAGTACTATTC ntnH 25062 - 28655 + | botulinum neurotoxin type B, nontoxic-nonhemagglutinin component, NTNH TERM 52 30144 - 30123 - g 76 -8.9 -3.02314 | opp_overlap 30121 30117, overlap 30120 30125 30127 TACACAGAATAATTA TATAGGAAA TGAC TTTCCTATA AATGAATTAATTTTA TERM 53 31247 - 31235 - g 72 -3.5 -5.20606 | AAATACTAATAAAAA TATTT AAT AAATA TAATAGCGAAATTTT TERM 54 31531 - 31513 - g 70 -7.6 -3.37067 | overlap 31512 GATGATATACAAAAT TATATTCA TAA TGAATATA CGATAATTAATTGTA CLL_0038 28681 - 32556 + | botulinum neurotoxin type B, BoNT/B CLL_0039 33219 - 33341 + | transposon related protein TERM 55 33763 - 33735 - g 80 -7.5 -4.4874 | opp_overlap 33733 33735 33736, overlap 33736 TTTAAAAATTTAAAA GCTAGTGGTATTA GAA TAATTCCACTAGA TGTTCCTTATTTAAA TERM 56 33735 - 33763 + G 70 -7.5 -3.38135 | opp_overlap 33735 33736, overlap 33733 33736 TTTAAAAATTTAAAA GCTAGTGGTATTA GAA TAATTCCACTAGA TGTTCCTTATTTAAA TERM 57 33736 - 33762 + G 84 -11 -2.62158 | opp_overlap 33736 33735, overlap 33735 33733 TTAAAAATTTAAAAG CTAGTGGTATTA GAA TAATTCCACTAG ATGTTCCTTATTTAA TERM 58 33762 - 33736 - g 90 -11 -3.28159 | opp_overlap 33735 33733 33736, overlap 33735 TTAAAAATTTAAAAG CTAGTGGTATTA GAA TAATTCCACTAG ATGTTCCTTATTTAA CLL_0040 33462 - 34094 + | resolvase/recombinase TERM 59 34085 - 34130 + F 100 -23.9 -5.47159 | opp_overlap 34085 34099, overlap 34099 AAAAATATTAAAAAA TCAAGAATAAAAAAGCTCTTA ACTT TAAGAGCTTTTTTATTCTTGA TTTTTTATGTTGAAA TERM 60 34130 - 34085 - f 100 -23.9 -5.38348 | opp_overlap 34085 34099, overlap 34099 AAAAATATTAAAAAA TCAAGAATAAAAAAGCTCTTA ACTT TAAGAGCTTTTTTATTCTTGA TTTTTTATGTTGAAA TERM 61 34116 - 34099 - f 100 -8.5 -5.66229 | opp_overlap 34085 34099, overlap 34085 ATCAAGAATAAAAAA GCTCTTA ACTT TAAGAGC TTTTTTATTCTTGAT TERM 62 34099 - 34116 + F 100 -8.5 -5.66229 | opp_overlap 34099 34085, overlap 34085 ATCAAGAATAAAAAA GCTCTTA ACTT TAAGAGC TTTTTTATTCTTGAT TERM 63 34346 - 34328 - g 89 -7.6 -5.03405 | opp_overlap 34327 34332 AATAGTATAGAAAAA CAAATATT TGA AATATTTG ATGTATATTCAAATG CLL_0042 34265 - 34810 + | site-specific recombinase TERM 64 34917 - 34900 - f 75 -7.1 -4.36372 | AAAAAATTTAATAAA GTTGTTT ATAT AAACAAC ATGACAAAAACATTG CLL_0044 35009 - 35329 + | hypothetical protein TERM 65 35799 - 35831 + F 100 -8 -6.20267 | opp_overlap 35802 AGAGAACAATTTCAA GCATTTTAGTAT AAAAAGTAC ATACTAAAATGC TTTTTTTATTTTTAA CLL_0045 35980 - 37320 + | replication protein TERM 66 37585 - 37550 - g 83 -7.8 -4.77157 | opp_overlap 37550, overlap 37539 GCAAGCTATTAAAAA CAATAGCACTAACATT AATA AGTGTTAATACTATTG TCTATCCAATATACG CLL_0046 37528 - 38298 + | S-layer protein TERM 67 38331 - 38317 - f 78 -4.4 -5.54894 | opp_overlap 38317 AATGTATTAAAAAAA TAAAAA GGA TTTTTA ATTTTTATGAAGAAT TERM 68 38439 - 38398 - f 71 -6.4 -4.04397 | gap 1, opp_overlap 38400, overlap 38396 38438 ATTTTTATAAAAACA TATTTAAGTATA-AAAAAT GATAT ACTTTTATATACTTAAATA TTGACAATAAGGGGA CLL_0047 38545 - 39438 + | putative ATPase TERM 69 39642 - 39618 - g 73 -8.8 -2.9857 | opp_overlap 39622, overlap 39622 ATAATAATTTAGATA TTAATAGCAT AGCAA ATGCTATTAA TCAACTTACTAAAGT TERM 70 39735 - 39725 - g 78 -2.6 -5.75822 | GATAAACCAAAAAAA TTAT CAG ATAA AGATAAAGAAACTAA CLL_0048 39431 - 39790 + | hypothetical protein TERM 71 39816 - 39792 - T 100 -10.1 -4.56883 | opp_overlap 39792 TGAATAGTAAATAAA GGGAGTTGTAT TTT ATACAATTCCC TTTTTCATATATAAA TERM 72 39792 - 39816 + T 100 -12.3 -4.84527 | opp_overlap 39792 TGAATAGTAAATAAA GGGAGTTGTAT TTT ATACAATTCCC TTTTTCATATATAAA CLL_0049 40055 - 39834 - | hypothetical protein CLL_0050 40261 - 40515 + | DNA-binding protein TERM 73 40838 - 40852 + G 70 -2.9 -5.25803 | ATATAACAAAAGTTT TTTCA AGCTC TGAAA TTTTTTCTAAGAATT CLL_0051 40570 - 41277 + | putative LexA repressor TERM 74 41288 - 41324 + F 79 -9 -3.72405 | opp_overlap 41290 41296, overlap 41290 41296 AATAAATATTCTTAG AATGAAAAGAAGTTAC ATTAA GTAACTTCTTTTTATA TTCTCCTTTTGTCAA TERM 75 41322 - 41290 - f 82 -9.4 -3.34029 | opp_overlap 41288 41290 41296, overlap 41296 TAAATATTCTTAGAA TGAAAAGAAGTTAC ATTAA GTAACTTCTTTTTA TATTCTCCTTTTGTC TERM 76 41290 - 41322 + F 95 -11.6 -3.43364 | opp_overlap 41290 41296, overlap 41288 41296 TAAATATTCTTAGAA TGAAAAGAAGTTAC ATTAA GTAACTTCTTTTTA TATTCTCCTTTTGTC TERM 77 41316 - 41296 - f 82 -8.4 -4.48987 | opp_overlap 41290 41288 41296, overlap 41290 TTCTTAGAATGAAAA GAAGTTAC ATTAA GTAACTTC TTTTTATATTCTCCT TERM 78 41296 - 41316 + F 95 -8.4 -5.16133 | opp_overlap 41296 41290, overlap 41290 41288 TTCTTAGAATGAAAA GAAGTTAC ATTAA GTAACTTC TTTTTATATTCTCCT CLL_0052 41438 - 41674 + | transcriptional regulator, Cro/CI family CLL_0053 41747 - 42109 + | hypothetical protein CLL_0054 42120 - 42332 + | hypothetical protein TERM 79 42359 - 42385 + F 73 -3.2 -5.53288 | TAGATAGATTATCAG TAAATTAATTAT AAA ATCATTAGTTTA TTTTTTTGGCTTAAA CLL_0055 42429 - 42941 + | hypothetical protein TERM 80 43175 - 43161 - g 73 -4.3 -5.17576 | GAGGAAGTGAAAAAA TACCT TTATT AGGTA ATTCGGGATATGACC TERM 81 44376 - 44364 - g 80 -7.7 -4.49353 | opp_overlap 44362 44364 GTACAACAGAACAAA GCATC ATA GATGC TATTCATATTACAAA CLL_0056 42953 - 47533 + | cell wall binding repeat domain protein