TransTermHP v2.07 (built on Jan 21 2009) 25 bins; sample size is 20000000 --pval-conf=/fs/szasmg2/carlk/TTupdate2/expterm.dat --gc=-2.3 --au=-0.9 --gu=1.3 --mm=3.5 --gap=6 --max-len=59 --min-stem=4 --max-loop=13 --min-loop=3 --uwin-length=6 --uwin-require=3 --max-hp-score=-2 --max-tail-score=-2.5 --loop-penalty=1,2,3,4,5,6,7,8,9,10,11 --start-cut=0 --end-cut=25 Genes: 0.716167 %AT, 2934427 nt, 14617 terms. Intergenic: 0.767721 %AT, H2T: 544078 nt, 5486 terms; T2T: 90068 nt, 2511 terms; H2H: 121179 nt, 2626 terms. Each terminator entry starts in column 3 and is of the form: term # start - end +/- regionconf hp tail | notes Followed by the sequence of the 5' tail, 5' stem, loop, 3' stem, and 3' tail. Genes are interspersed, and start the first column. SEQUENCE gi|188587536|ref|NC_010723.1| Clostridium botulinum E3 str. Alaska E43, complete genome (length 3659644) dnaA 127 - 1497 + | chromosomal replication initiator protein DnaA dnaN 1758 - 2858 + | DNA polymerase III, beta subunit yaaA 2897 - 3103 + | S4 domain protein YaaA CLH_0004 3175 - 4260 + | DNA replication and repair protein RecF CLH_0005 4275 - 4535 + | hypothetical protein gyrB 4571 - 6478 + | DNA gyrase, B subunit TERM 1 6540 - 6523 - g 78 -5.7 -4.93547 | TTAATGAAGGAAAAA TTATATC TGTA GATATAA AAAACGAAATGAAAA TERM 2 7533 - 7523 - g 73 -5.4 -4.63748 | overlap 7525 AAATAACGAAACAAA GGTT TTA AACC TAAAAGAAGTATTAG gyrA 6501 - 9050 + | DNA gyrase, A subunit TERM 3 9081 - 9110 + F 85 -5.9 -5.58522 | gap 1, opp_overlap 9081 AATAAAACAAAAAAA CCATGTAGGTAT AGATAAA AT-CCTACATGG TTTTTATTTTATATC TERM 4 9110 - 9081 - f 100 -5.9 -6.17669 | gap 1, opp_overlap 9081 AATAAAACAAAAAAA CCATGTAGGTAT AGATAAA AT-CCTACATGG TTTTTATTTTATATC TERM 5 9396 - 9385 - f 78 -4.4 -5.53288 | TTCAACTTAAAAAAA CTTG TTGA CAAG AAACAAATTAAGTGA TERM 6 10571 - 10558 - f 72 -8.1 -3.21912 | CTCTTAATCGAGGAA GTCGC TTCG GCGAC AGGAAGACAGGTGGT TERM 7 11061 - 11042 - f 75 -9.2 -2.65808 | opp_overlap 11045 11048, overlap 11039 11054 AGTCGTAACAAGGTA GCCGTAGG AGAA CCTGCGGC TGGATCACCTCCTTT TERM 8 11169 - 11197 + F 95 -10.5 -3.94 | overlap 11171 ATGTAGATTCTGTTC AATTTTGAAAGAC TAA GTCTTTCAAAATG TTCTTTGAAAATTGC TERM 9 11171 - 11195 + F 100 -13.1 -3.55603 | overlap 11169 GTAGATTCTGTTCAA TTTTGAAAGAC TAA GTCTTTCAAAA TGTTCTTTGAAAATT TERM 10 11434 - 11449 + F 73 -9 -2.79915 | opp_overlap 11431 11434, overlap 11436 GAATGAGGAAACTCA CATGGG AAAC CCCATG TATCGTAAAGTGAAT TERM 11 11449 - 11434 - f 72 -9 -2.69489 | opp_overlap 11434 11436, overlap 11431 GAATGAGGAAACTCA CATGGG AAAC CCCATG TATCGTAAAGTGAAT TERM 12 11593 - 11576 - f 76 -8.5 -3.695 | GGGAAAGAGCCCAAA CCAAAGA TTTA TCTTTGG GGTTGCGGACAGAAC TERM 13 11760 - 11745 - f 81 -10.4 -2.71011 | ACCTTGTGGGAAGCA GGGAGG ACCA CCTCCC AAGGCTAAATACTAC TERM 14 11834 - 11823 - f 75 -7.2 -4.2354 | GAAAGGTGAAAAGAA CCCC GGGA GGGG AGTGAAATAGAACCT TERM 15 12070 - 12060 - f 71 -6.8 -4.15453 | opp_overlap 12063 GAAGCGAGGGTAAAA CCTC GTG GAGG ACCGAACCACGTTGC TERM 16 12659 - 12643 - f 74 -8.7 -3.05343 | CCCACAGGCCGAATA CCTAAGG TTT CCTCAGG AAGGTTCGTCCGCTG TERM 17 14581 - 14561 - f 80 -8.4 -4.20084 | opp_overlap 14561 ACCATTTATTTAAAA GCTATGAA GTTAA TTCATAGC TTTTTTTGTTATAAT TERM 18 14561 - 14581 + F 100 -8.4 -5.89921 | opp_overlap 14561 ACCATTTATTTAAAA GCTATGAA GTTAA TTCATAGC TTTTTTTGTTATAAT CLH_0014 14633 - 15136 + | putative HD domain TERM 19 15389 - 15379 - g 80 -5.4 -5.34857 | TTAAATAAAATAAAA GCTA TAA TAGC TGTAAATCATAAAGA CLH_0015 15175 - 15687 + | 3H domain protein CLH_0016 15700 - 17091 + | FAD-dependent oxidoreductase CLH_0017 17110 - 17346 + | hypothetical protein TERM 20 17590 - 17624 + F 100 -7.9 -5.71712 | overlap 17588 TAGGGTGGCAACGCG GAGTTTTTCGTCCCT TTTAT AGGGGAGAAAGGCTC TTTTTTTATATAAAA serS 17662 - 18939 + | seryl-tRNA synthetase TERM 21 18955 - 19001 + F 100 -13.4 -5.35222 | opp_overlap 18958, overlap 18958 TTAGTTTAAATATAT AAATAATAGTCTACATTAACAT ATT AAGTTGATGTAGACTATTATTA TTTTTTATAGATTTT TERM 22 18998 - 18958 - f 100 -12.9 -4.27886 | opp_overlap 18958 18955 GTTTAAATATATAAA TAATAGTCTACATTAACAT ATT AAGTTGATGTAGACTATTA TTATTTTTTATAGAT TERM 23 18958 - 18998 + F 100 -15.1 -4.73105 | opp_overlap 18958, overlap 18955 GTTTAAATATATAAA TAATAGTCTACATTAACAT ATT AAGTTGATGTAGACTATTA TTATTTTTTATAGAT TERM 24 19112 - 19129 + F 76 -4.3 -5.41746 | opp_overlap 19107 19112 ATATAAAAATTATAA TTTATAT GAAA ATATAAA TTTTTTTAAGAAATT TERM 25 19236 - 19220 - f 72 -8.7 -2.52543 | AGTTGGTTTAAGGCA CCGGTCT TGA AAACCGG CGTGCGTGTGAGCGT TERM 26 19412 - 19433 + F 100 -10.3 -5.72254 | opp_overlap 19412 GATTCTCCGCCAGAA CATCTAGTA TTTT TACTAGATG TTTTTTATTGTTTAG TERM 27 19433 - 19412 - f 87 -10.3 -3.28924 | opp_overlap 19412 GATTCTCCGCCAGAA CATCTAGTA TTTT TACTAGATG TTTTTTATTGTTTAG TERM 28 19726 - 19710 - f 72 -8.7 -2.52543 | AGTTGGTTTAAGGCA CCGGTCT TGA AAACCGG CGTGCGTGTGAGCGT TERM 29 19902 - 19923 + F 100 -11.7 -5.9218 | opp_overlap 19902 GATTCTCCGCCAAAA CACCTAGTA TTTT TACTAGGTG TTTTTTTGTTATATG TERM 30 19923 - 19902 - f 100 -11.7 -4.07885 | opp_overlap 19902 GATTCTCCGCCAAAA CACCTAGTA TTTT TACTAGGTG TTTTTTTGTTATATG CLH_0023 20253 - 20762 + | acetyltransferase, gnat family TERM 31 21927 - 21917 - g 71 -2.6 -5.45813 | opp_overlap 21917 GATCAAAAAATAAAA TTAT TAA ATAA TCCATTAATTGTTTT addB 20801 - 24259 + | ATP-dependent nuclease subunit B addA 24285 - 28019 + | recombination helicase AddA TERM 32 28215 - 28194 - T 84 -8.9 -4.27886 | TTTTAAACATATAAA TAGATTTTG AATA CAAAATCTA AATAAAAAAATAAGT TERM 33 28275 - 28226 - T 100 -8.9 -5.96894 | opp_overlap 28229, overlap 28229 ATCTAAATAAAAAAA TAAGTGAGTGTCTTAAATGTA TGGGTAAT TATACTTAAGACACTCACTTT TCTATATTTATTGGG TERM 34 28272 - 28229 - T 100 -10.6 -5.01858 | opp_overlap 28229, overlap 28226 TAAATAAAAAAATAA GTGAGTGTCTTAAATGTA TGGGTAAT TATACTTAAGACACTCAC TTTTCTATATTTATT TERM 35 28229 - 28272 + T 100 -10.6 -4.77778 | opp_overlap 28226 28229 TAAATAAAAAAATAA GTGAGTGTCTTAAATGTA TGGGTAAT TATACTTAAGACACTCAC TTTTCTATATTTATT CLH_0026 29452 - 28301 - | ErfK/YbiS/YcfS/YnhG family protein TERM 36 28782 - 28803 + g 88 -5.2 -5.71295 | TCTAAATACTGTTGT TTGCTGGA TTTAAT TTCAGCAA TTTTTGTTTTTATAT CLH_0027 29608 - 30417 + | hypothetical protein TERM 37 30422 - 30461 + T 100 -22.6 -5.4182 | opp_overlap 30422 ACGGAATGTAATAAA GGATATATCATTAAGTGC TTAA GCACTTAATGATATATCC TTTTTATTTATAATT TERM 38 30461 - 30422 - T 100 -22.6 -4.25681 | opp_overlap 30422 ACGGAATGTAATAAA GGATATATCATTAAGTGC TTAA GCACTTAATGATATATCC TTTTTATTTATAATT CLH_0028 31644 - 30475 - | sodium:dicarboxylate symporter family protein TERM 39 31310 - 31329 + g 95 -8.6 -4.89562 | GCTTTAATTGTTTCA GTTGCTAC TAAT GTAGCAGC TTTTATTAGTTTTGG CLH_0029 31981 - 32877 + | sensory box histidine kinase TERM 40 32886 - 32944 + F 81 -10.4 -2.74845 | gap 1, opp_overlap 32884 32886 32896 32900, overlap 32886 32896 32900 CTTATAGAAATGACA TTTATTAAAATAAATACTTAATATTAT AGAAAA ATAATCTTAAGTATTTATTTT-ATAAA CTTGCTTATTATGGT TERM 41 32944 - 32886 - f 85 -10.4 -3.08695 | gap 1, opp_overlap 32886 32886 32896 32900, overlap 32884 32896 32900 CTTATAGAAATGACA TTTATTAAAATAAATACTTAATATTAT AGAAAA ATAATCTTAAGTATTTATTTT-ATAAA CTTGCTTATTATGGT TERM 42 32935 - 32896 - f 80 -8.3 -4.29738 | opp_overlap 32886 32886 32896 32900, overlap 32884 32886 32900 TGACATTTATTAAAA TAAATACTTAATATTAT AGAAAA ATAATCTTAAGTATTTA TTTTATAAACTTGCT TERM 43 32896 - 32935 + F 82 -8.3 -4.43189 | opp_overlap 32884 32896 32886 32900, overlap 32886 32886 32900 TGACATTTATTAAAA TAAATACTTAATATTAT AGAAAA ATAATCTTAAGTATTTA TTTTATAAACTTGCT TERM 44 32900 - 32931 + F 70 -4.7 -4.77775 | opp_overlap 32884 32900 32896 32886, overlap 32896 32886 ATTTATTAAAATAAA TACTTAATATTAT AGAAAA ATAATCTTAAGTA TTTATTTTATAAACT TERM 45 33087 - 33110 + F 100 -11.2 -5.9218 | opp_overlap 33087 CACGCTCTGCCAAAA GACTTAACTA TTTT TAGTTAAGTC TTTTTTTATTATATA TERM 46 33110 - 33087 - f 100 -11.2 -4.07885 | opp_overlap 33087 CACGCTCTGCCAAAA GACTTAACTA TTTT TAGTTAAGTC TTTTTTTATTATATA TERM 47 33554 - 33536 - g 77 -6.2 -4.65182 | opp_overlap 33532 33539, overlap 33532 TATAAATGAAATAAA TAATTTAT TAA ATAAATTA GATATAGAAAAAACT CLH_0031 33324 - 34463 + | hypothetical protein TERM 48 34504 - 34448 - T 76 -4.2 -5.33921 | gap 2, opp_overlap 34449 34456 34461 34464, overlap 34457 34461 AAATGAATTAAAAAA TGTAATTAATAAATAACAGAGAGAAATT TAA AATTTCTCTCTGTTATTTAGG--TTACT TTCGTTTAATATAAA TERM 49 34449 - 34503 + T 100 -12.1 -4.12738 | gap 2, opp_overlap 34448 34457 34461, overlap 34456 34461 34464 AATGAATTAAAAAAT GTAATTAATAAATAACAGAGAGAAATT TAA AATTTCTCTCTGTTATTTA--GGTTAC TTTCGTTTAATATAA TERM 50 34456 - 34498 + T 100 -18.2 -2.78586 | opp_overlap 34448 34457 34461, overlap 34449 34461 34464 TAAAAAATGTAATTA ATAAATAACAGAGAGAAATT TAA AATTTCTCTCTGTTATTTAG GTTACTTTCGTTTAA TERM 51 34497 - 34457 - T 100 -21.7 -3.47915 | opp_overlap 34456 34449 34461 34464, overlap 34448 34461 AAAAAATGTAATTAA TAAATAACAGAGAGAAATT TAA AATTTCTCTCTGTTATTTA GGTTACTTTCGTTTA TERM 52 34493 - 34461 - T 100 -18.1 -4.34223 | opp_overlap 34456 34449 34461 34464, overlap 34457 34448 AATGTAATTAATAAA TAACAGAGAGAAATT TAA AATTTCTCTCTGTTA TTTAGGTTACTTTCG TERM 53 34461 - 34493 + T 100 -18.1 -3.83214 | opp_overlap 34461 34457 34448, overlap 34456 34449 34464 AATGTAATTAATAAA TAACAGAGAGAAATT TAA AATTTCTCTCTGTTA TTTAGGTTACTTTCG TERM 54 34464 - 34490 + T 100 -15.4 -4.02653 | opp_overlap 34461 34457 34448, overlap 34461 34456 34449 GTAATTAATAAATAA CAGAGAGAAATT TAA AATTTCTCTCTG TTATTTAGGTTACTT psd 35499 - 34609 - | phosphatidylserine decarboxylase TERM 55 35247 - 35237 - G 84 -4 -5.7946 | TTTCTAACAAAAAAA TCAT TAA ATGA ATTAAAATCAGAAAT CLH_0033 35661 - 36236 + | transcriptional regulator, TetR family TERM 56 36328 - 36275 - f 100 -30.3 -3.9642 | opp_overlap 36280 36283 36324, overlap 36280 AAATATGGAACTAAA TAAAACAAGTAAGCCTATCCTAAAA GTTT TTTTAGGATAGGCTTACTTGTTTTA ACGATAAAATTCAAT TERM 57 36280 - 36323 + F 100 -25.8 -4.11394 | opp_overlap 36275 36280, overlap 36283 TGGAACTAAATAAAA CAAGTAAGCCTATCCTAAAA GTTT TTTTAGGATAGGCTTACTTG TTTTAACGATAAAAT TERM 58 36323 - 36280 - f 100 -25.8 -4.99947 | opp_overlap 36280 36283, overlap 36275 TGGAACTAAATAAAA CAAGTAAGCCTATCCTAAAA GTTT TTTTAGGATAGGCTTACTTG TTTTAACGATAAAAT TERM 59 36283 - 36320 + F 100 -21.7 -4.18506 | opp_overlap 36280 36275, overlap 36280 AACTAAATAAAACAA GTAAGCCTATCCTAAAA GTTT TTTTAGGATAGGCTTAC TTGTTTTAACGATAA CLH_0034 36549 - 38279 + | hydrogenase-1 CLH_0035 38556 - 39344 + | HAD-superfamily hydrolase TERM 60 39416 - 39391 - T 84 -9.3 -3.75897 | AATTTTTAAGGTAAA GTTATTAAAAT GAAA ATTTTAATAAC TGAGTACGTAAATTA TERM 61 39480 - 39458 - T 100 -12.1 -4.75288 | opp_overlap 39458 TTATATCAAAATAAA GGCTATTCC TTAAT GGAATAGCC TTTTAGTTAAATTAT TERM 62 39458 - 39480 + T 100 -12.1 -4.46267 | opp_overlap 39458 TTATATCAAAATAAA GGCTATTCC TTAAT GGAATAGCC TTTTAGTTAAATTAT CLH_0036 41087 - 39492 - | ABC transporter, ATP-binding protein TERM 63 41431 - 41409 - H 86 -9.2 -4.18506 | overlap 41410 TTATTCTCAAAATAA GCCACATAGA TAA TCTATGTGGA AGTAGAGTATTTAGT TERM 64 41430 - 41410 - H 93 -12.7 -3.10622 | overlap 41409 TATTCTCAAAATAAG CCACATAGA TAA TCTATGTGG AAGTAGAGTATTTAG TERM 65 41478 - 41458 - H 93 -12.7 -3.07113 | opp_overlap 41458 TAGTATTGTAGGCAA CCACATAGT AAC ACTATGTGG TTTTTTTATTCTTTG TERM 66 41458 - 41478 + H 100 -12.7 -6.01369 | opp_overlap 41458 TAGTATTGTAGGCAA CCACATAGT AAC ACTATGTGG TTTTTTTATTCTTTG CLH_0037 41578 - 42891 + | sodium:neurotransmitter symporter family protein CLH_0038 43066 - 43194 + | hypothetical protein CLH_0039 43383 - 43559 + | hypothetical protein CLH_0040 44218 - 43571 - | hemolysin-3 CLH_0041 44439 - 45020 + | hypothetical protein CLH_0042 45021 - 46721 + | isopentenyl-diphosphate delta-isomerase TERM 67 47060 - 47077 + F 75 -5.7 -5.03994 | opp_overlap 47059 47060 47063 TAGCGAACAAAAAGT TAATCTT GGTT AAGATTA TTTTTATATATAAAA CLH_0043 47187 - 47972 + | hypothetical protein TERM 68 48082 - 48108 + T 73 -6.7 -4.28487 | opp_overlap 48082 CACCAGTTTTAAGCA GACTATATACT CACAA GGTATATGGTC TTTAATTTTATAGTA TERM 69 48235 - 48259 + T 81 -8 -4.42081 | opp_overlap 48235 CAGAATTAATAGCAA GCTATATACT CACAA GGTATATAGC TTTTAAATTTATATT TERM 70 48359 - 48322 - T 82 -5.7 -5.55695 | opp_overlap 48324, overlap 48324 TAATAATATAAAAAA TAGCAATAGAATGATTT ATGA ACAACATTCTATTGCTT AATTTTTTATTAACA TERM 71 48324 - 48357 + T 79 -8.3 -4.04157 | opp_overlap 48322 48324 ATAATATAAAAAATA GCAATAGAATGATTT ATGA ACAACATTCTATTGC TTAATTTTTTATTAA TERM 72 48357 - 48324 - T 82 -8.3 -4.38219 | opp_overlap 48324, overlap 48322 ATAATATAAAAAATA GCAATAGAATGATTT ATGA ACAACATTCTATTGC TTAATTTTTTATTAA CLH_0044 49735 - 48380 - | membrane protein TERM 73 48624 - 48652 + g 79 -8.9 -3.45776 | opp_overlap 48619 48633 AAACCAACAACTAAT GTTTTAGAAGCTG CAA CAGCTTCAGGAAC TTGTAATAACTTTAG TERM 74 51086 - 51076 - g 76 -4 -5.4659 | TAAGATAAATAAAAA TACT GAG AGTA CTAAAAAAGCTGATG TERM 75 51403 - 51381 - g 70 -6.4 -4.1958 | ATACAAATCAAATAA TACAAAATTC TAT GAAGTTTGTA AAAAATAGTAATGTA CLH_0045 49985 - 51679 + | methyl-accepting chemotaxis sensory transducer TERM 76 51741 - 51770 + F 84 -5.1 -5.64006 | TAAAGAGTTATTTAA GCTATATCTGAAT AAAA ATTAGGGTATAGC TTTTTTTAGTTACCT proB 51852 - 52661 + | glutamate 5-kinase proA 52678 - 53922 + | glutamate-5-semialdehyde dehydrogenase TERM 77 54422 - 54412 - g 76 -4 -5.50499 | TTATATGTAAAAAAA CTTT ATG AAAG CGTGGGATTTAAGGT CLH_0048 54052 - 54492 + | acetyltransferase TERM 78 54583 - 54558 - f 71 -5.7 -4.58085 | opp_overlap 54558 ATACGTACAAATAAA TTAATAATAAA TGTA TTCATTATTAA TTATATTTATTTAGT TERM 79 54754 - 54731 - f 85 -3.4 -6.20267 | gap 1, opp_overlap 54731 TGAAAAATAAAAAAA TAATAAT-ATG CCG CATCATTATTA TTGTACTACATTTGG TERM 80 54891 - 54903 + G 70 -4.9 -4.76311 | opp_overlap 54891 GGTTATTTCAAGAAG TATTG GAA CAATA TTATTTTTATTTATA CLH_0049 54838 - 55344 + | bacterial membrane flanked domain family TERM 81 56597 - 56581 - g 74 -2.3 -5.64873 | overlap 56583 GTCAAGAATAAAAAA TACTTAT ATA ATAAGAA AATTTAAGGTTCAAT CLH_0050 55322 - 56749 + | putative bacterial membrane flanked domain family TERM 82 56759 - 56788 + F 100 -8.1 -5.58179 | gap 1, opp_overlap 56759 56754 TTATAAATATGAAAA TGTGCAGATTATTA TAA TGA-AATCTGCACA TTTTTTATTATAATA TERM 83 56788 - 56759 - f 75 -6.6 -4.53036 | opp_overlap 56759, overlap 56754 TTATAAATATGAAAA TGTGCAGATT ATTATAATGA AATCTGCACA TTTTTTATTATAATA CLH_0051 56976 - 57746 + | short chain dehydrogenase CLH_0052 58130 - 58942 + | HAD superfamily hydrolase CLH_0053 59038 - 60495 + | putative methyl-accepting chemotaxis protein TERM 84 60772 - 60814 + F 87 -7.1 -5.23292 | TTGATAAATATGTGT GGATAGTAAAGAGACCTCT TTTAT GGTTGTCTCTTTAGTATCC TTTTATTTTATATAA carA 60868 - 61917 + | carbamoyl-phosphate synthase, small subunit carB 61932 - 65141 + | carbamoyl-phosphate synthase, large subunit TERM 85 65157 - 65179 + T 100 -7.9 -5.71983 | opp_overlap 65157 GTATAAATAAAAAAA TGTTACAAT AATTA ATTGTAACA TTTTTTTATGCTTCA TERM 86 65179 - 65157 - T 100 -7.9 -6.02919 | opp_overlap 65157 GTATAAATAAAAAAA TGTTACAAT AATTA ATTGTAACA TTTTTTTATGCTTCA CLH_0056 66294 - 65185 - | HD-GYP hydrolase domain containing protein TERM 87 65915 - 65940 + g 79 -9.3 -3.27766 | opp_overlap 65914 65930 GAAATTAACAAATTT TTATTAGATAA TATA TTATCTAATAA TTCCTCTGAGATATT TERM 88 66446 - 66488 + r 86 -9.5 -3.93673 | opp_overlap 66453, overlap 66450 66453 AGACAAAACTTGCAA TAAAAAATAGGAGAAAAAT CCAAA AATTTTCTCCTATTCTTTA TTTATAAGATATTTG TERM 89 66450 - 66484 + r 74 -5.9 -4.56367 | opp_overlap 66453, overlap 66446 66453 AAAACTTGCAATAAA AAATAGGAGAAAAAT CCAAA AATTTTCTCCTATTC TTTATTTATAAGATA TERM 90 66453 - 66481 + r 81 -7.6 -4.38748 | opp_overlap 66453, overlap 66450 66446 ACTTGCAATAAAAAA TAGGAGAAAAAT CCAAA AATTTTCTCCTA TTCTTTATTTATAAG TERM 91 66481 - 66453 - R 100 -8.3 -5.45652 | opp_overlap 66450 66446 66453 ACTTGCAATAAAAAA TAGGAGAAAAATC CAA AAATTTTCTCCTA TTCTTTATTTATAAG CLH_0057 68469 - 66577 - | glutamine synthetase TERM 92 69080 - 69062 - g 100 -9 -5.23644 | overlap 69067 AAGTAAATATAAAAA TATACCTA TAA TAGGTATA GAGCCAGCATTAAAG murI 68787 - 69563 + | glutamate racemase TERM 93 69659 - 69637 - f 100 -8 -5.65513 | opp_overlap 69637 69643, overlap 69656 69658 CATTAAGTAAAAAAA TATATTTATA TTA TATAAATATA TTTAATATATTAAAT TERM 94 69637 - 69659 + F 75 -8 -3.93664 | opp_overlap 69637 69656 69658, overlap 69643 CATTAAGTAAAAAAA TATATTTATA TTA TATAAATATA TTTAATATATTAAAT CLH_0059 69704 - 70228 + | peptidyl-prolyl cis-trans isomerase CLH_0060 70407 - 70775 + | hypothetical protein CLH_0061 70777 - 71445 + | DNA-binding protein TERM 95 71455 - 71484 + F 100 -8.8 -6.36459 | opp_overlap 71455 CTGTAGTTTTATGAA GTAGTTGTATAC ATAAAA GTATATAACTAC TTTTTTTTTGTTCAA TERM 96 72204 - 72194 - g 70 -6.8 -4.06148 | AATAGTGTATATAAA GGTG CGG CACC AGAAGCATCTATAGC CLH_0062 71609 - 75205 + | subtilisin like protease CLH_0063 75295 - 76626 + | spore cortex-lytic enzyme TERM 97 76634 - 76662 + T 100 -17.7 -5.48063 | opp_overlap 76634 TTGTATAGAAAAAAA GCAATGCTTCAAA TTG TTTGAAGCATTGC TTTTTTATATTCCCT TERM 98 76662 - 76634 - T 100 -17.7 -5.71712 | opp_overlap 76634 TTGTATAGAAAAAAA GCAATGCTTCAAA TTG TTTGAAGCATTGC TTTTTTATATTCCCT CLH_0064 77572 - 76667 - | radical SAM domain protein CLH_0065 78782 - 77724 - | transporter TERM 99 78124 - 78143 + g 78 -4.4 -5.41359 | gap 1 GATCCAAGAGTAATC CCTATAAAC ATA GTTT-TAGG TTTTTTCATTTGATT CLH_0066 78917 - 79987 + | putative lipoprotein CLH_0067 80080 - 81018 + | radical SAM protein, family CLH_0068 81019 - 81735 + | 2-phosphosulfolactate phosphatase TERM 100 81765 - 81730 - T 100 -19.4 -4.09827 | opp_overlap 81730 81741, overlap 81741 GATAAGATAATTAAA CTATAAAAAAAGTGGC ATAA GCCACTTTTTTTATAG TTTTGTTTTATCAAA TERM 101 81730 - 81765 + T 100 -19.4 -5.18371 | opp_overlap 81730 81741, overlap 81741 GATAAGATAATTAAA CTATAAAAAAAGTGGC ATAA GCCACTTTTTTTATAG TTTTGTTTTATCAAA TERM 102 81754 - 81741 - T 100 -8.1 -5.75599 | opp_overlap 81730 81741, overlap 81730 TAAACTATAAAAAAA GTGGC ATAA GCCAC TTTTTTTATAGTTTT TERM 103 81741 - 81754 + T 100 -8.1 -5.77632 | opp_overlap 81741 81730, overlap 81730 TAAACTATAAAAAAA GTGGC ATAA GCCAC TTTTTTTATAGTTTT CLH_0069 82950 - 81760 - | PUA domain containing protein TERM 104 83111 - 83083 - R 100 -9.1 -5.49809 | opp_overlap 83083 83090 TAAAGCCTAAAAAAA TTATAAACCAG AATAAAA CTGGTTTATAA TTCTTCTTTAAATAT TERM 105 83083 - 83111 + r 82 -9.1 -4.11346 | opp_overlap 83083, overlap 83090 TAAAGCCTAAAAAAA TTATAAACCAG AATAAAA CTGGTTTATAA TTCTTCTTTAAATAT CLH_0070 83707 - 83498 - | hypothetical protein CLH_0071 84214 - 84897 + | DNA-binding response regulator CLH_0072 84903 - 86189 + | sensor histidine kinase TERM 106 86264 - 86320 + F 82 -10.1 -3.10112 | gap 1, opp_overlap 86261 86272 86301, overlap 86272 TAAAATAAAATTTTT TAATAAAA-GCAACTATTTAGTTT GTTATATGTA GAACTAAATAGTTGCTTTTTATTA TTCAGTAAATTGCAT TERM 107 86272 - 86311 + F 100 -8.9 -5.30348 | opp_overlap 86272 86301, overlap 86264 AATTTTTTAATAAAA GCAACTATTTAGTTT GTTATATGTA GAACTAAATAGTTGC TTTTTATTATTCAGT TERM 108 86311 - 86272 - f 85 -8.2 -4.64334 | opp_overlap 86272 86264, overlap 86301 AATTTTTTAATAAAA GCAACTATTTAGTT TGTTATATGTAG AACTAAATAGTTGC TTTTTATTATTCAGT CLH_0073 86484 - 87170 + | VTC domain superfamily CLH_0074 87205 - 87894 + | tubulin/FtsZ, GTPase TERM 109 88663 - 88650 - g 73 -8.1 -3.38316 | overlap 88658 GGAGGAGGCAATCAA GGTGG AAAT CCACC AAATGGAGGAGAAAG TERM 110 89369 - 89357 - g 70 -7.7 -3.41878 | opp_overlap 89356 CTTTCCAATTGATAA TCCTG TAT CAGGA GATTTATCAAGTATG CLH_0075 88011 - 90119 + | CotH protein TERM 111 90163 - 90180 + F 95 -6.3 -6.01187 | opp_overlap 90163 ATCTAATTAGTTAAA GAGATGT TAAT GCATCTC TTTTTTTATTTAATT TERM 112 90344 - 90302 - f 89 -12.5 -2.87957 | opp_overlap 90302, overlap 90284 90299 90308 90313 90334 TAATCATGATAATGA TTACAACATAATGTCTTTT TTTAT AAAAAACATTATGTTATAA TTTTCTATATATAAA TERM 113 90302 - 90344 + F 85 -8.1 -4.64844 | opp_overlap 90284 90302 90299 90308 90313 90334 TAATCATGATAATGA TTACAACATAATGTCTTTT TTTAT AAAAAACATTATGTTATAA TTTTCTATATATAAA TERM 114 90338 - 90308 - f 83 -9.3 -3.48684 | opp_overlap 90302, overlap 90302 90299 90313 90334 TGATAATGATTACAA CATAATGTCTTTT TTTAT AAAAAACATTATG TTATAATTTTCTATA CLH_0076 90401 - 92380 + | 2', 3'-cuclic nucleotide 2'-phosphodiesterase TERM 115 92471 - 92423 - f 84 -4.9 -5.69379 | gap 1, opp_overlap 92423 ATATAATTAAAAAAA CAAGTAAGGTAATAGAG-ATAA TTTAAT TTATTCCCTATGACTTTACTTG TTTTTAAATATATAA CLH_0077 92583 - 92705 + | hypothetical protein TERM 116 93098 - 93117 + F 89 -4.2 -6.10295 | GGTTTGCGATTTTAA CTTCGTCC TGTG GGATGGGG TTTTTTTTATATTAA ileS 93183 - 96293 + | isoleucyl-tRNA synthetase CLH_0079 96400 - 97398 + | catabolite control protein A TERM 117 97460 - 97419 - f 78 -6.8 -4.75372 | opp_overlap 97419 AGTATTCATTAAAAA TAAGATGTAGTAAAAGCA TTGTAT TGCTTTTATTGCACCTTA TTTTTATATCTGAGA TERM 118 97419 - 97460 + F 100 -9 -5.03994 | opp_overlap 97419 AGTATTCATTAAAAA TAAGATGTAGTAAAAGCA TTGTAT TGCTTTTATTGCACCTTA TTTTTATATCTGAGA CLH_0080 97693 - 98118 + | putative viral A-type inclusion protein CLH_0081 98244 - 99623 + | mate efflux family protein TERM 119 99634 - 99670 + T 100 -12.5 -6.00086 | opp_overlap 99636 99639, overlap 99639 CCTAGATTTATATAA AATAATCCCACATCTTA ATT TAAGATGTGGGATTTTA TTTTTTTTATAATAT TERM 120 99668 - 99636 - T 100 -15.1 -4.56358 | opp_overlap 99634 99639, overlap 99639 TAGATTTATATAAAA TAATCCCACATCTTA ATT TAAGATGTGGGATTT TATTTTTTTTATAAT TERM 121 99665 - 99639 - T 100 -16.8 -4.38744 | opp_overlap 99634 99639, overlap 99636 ATTTATATAAAATAA TCCCACATCTTA ATT TAAGATGTGGGA TTTTATTTTTTTTAT TERM 122 99639 - 99665 + T 100 -16.8 -5.69976 | opp_overlap 99639 99636, overlap 99634 ATTTATATAAAATAA TCCCACATCTTA ATT TAAGATGTGGGA TTTTATTTTTTTTAT CLH_0082 99862 - 99677 - | hypothetical protein CLH_0083 99972 - 100547 + | hypothetical protein CLH_0084 100563 - 101090 + | hypothetical protein TERM 123 101406 - 101394 - g 72 -3.5 -5.26875 | TGGCCAATGAAAAAA TTAAT GAA ATTAA ACCATTAACTAAAGA CLH_0085 101195 - 101527 + | hypothetical protein TERM 124 102777 - 102758 - g 75 -3.6 -5.41787 | opp_overlap 102758 102757 TAAAAAATATAAAAA TTTCTGTA TTGT TACAGGAA ATATTTTACTTAACA CLH_0086 101701 - 103311 + | ABC1 family protein kinase TERM 125 103786 - 103808 + F 100 -9.2 -6.22691 | opp_overlap 103786 TTGACTATTTTTAAA CCTTGAGTGT TAA GCACTTAAGG TTTTTTTTATTATTA CLH_0087 103872 - 105590 + | Na+/H+ antiporter family family TERM 126 105662 - 105689 + F 100 -13 -5.39905 | opp_overlap 105662 105665 TTGTGATATAATTAA TAAGATACCAAT AATA ATTGGTATCTTA TTTTTGTTCTTTAAT TERM 127 105689 - 105662 - f 95 -13 -3.49618 | opp_overlap 105662, overlap 105665 TTGTGATATAATTAA TAAGATACCAAT AATA ATTGGTATCTTA TTTTTGTTCTTTAAT TERM 128 105686 - 105665 - f 95 -10.3 -3.88097 | opp_overlap 105662, overlap 105662 TGATATAATTAATAA GATACCAAT AATA ATTGGTATC TTATTTTTGTTCTTT CLH_0088 106001 - 107776 + | Xaa-Pro aminopeptidase 1 TERM 129 107795 - 107828 + T 82 -9.1 -4.08974 | opp_overlap 107795, overlap 107799 TAAATAGTTAAAAAA GAAACTATTAAGTGA ATTT TAACTTAGTAGTTTC TTTATATAATCAAAT TERM 130 107828 - 107795 - T 83 -6.9 -5.18561 | opp_overlap 107795 107799 TAAATAGTTAAAAAA GAAACTATTAAGTGA ATTT TAACTTAGTAGTTTC TTTATATAATCAAAT CLH_0089 108345 - 107848 - | hypothetical protein TERM 131 108368 - 108388 + H 70 -2.7 -5.45802 | TCCCTCCTATTTTAT TATTATTAT AGC ATAGTAGTA TTTTTATTTTCAAAA CLH_0090 108445 - 109851 + | AAA superfamily ATPase with N- receiver domain CLH_0091 109978 - 110901 + | hydrolase, alpha/beta fold family TERM 132 110970 - 110912 - f 95 -13.6 -3.03104 | opp_overlap 110919 110924, overlap 110914 110924 TCTAAAACAGAATGA TAGTATATAAAATAATGGTTATAGGCTT TAA ATGCTTATGACCATTATTTTATATGCTA ATAAATTCAATCGAC TERM 133 110968 - 110914 - f 90 -11.8 -3.05941 | opp_overlap 110919 110924, overlap 110912 110924 TAAAACAGAATGATA GTATATAAAATAATGGTTATAGGCTT TAA ATGCTTATGACCATTATTTTATATGC TAATAAATTCAATCG TERM 134 110919 - 110963 + F 100 -14.7 -2.83641 | opp_overlap 110914 110912 110924, overlap 110924 CAGAATGATAGTATA TAAAATAATGGTTATAGGCTT TAA ATGCTTATGACCATTATTTTA TATGCTAATAAATTC TERM 135 110924 - 110958 + F 100 -10.2 -4.58424 | opp_overlap 110924 110914 110912, overlap 110919 TGATAGTATATAAAA TAATGGTTATAGGCTT TAA ATGCTTATGACCATTA TTTTATATGCTAATA TERM 136 110958 - 110924 - f 71 -5.8 -4.5954 | opp_overlap 110919 110924, overlap 110914 110912 TGATAGTATATAAAA TAATGGTTATAGGCTT TAA ATGCTTATGACCATTA TTTTATATGCTAATA CLH_0092 111358 - 112062 + | glycerol uptake facilitator protein dhaK 112175 - 113170 + | dihydroxyacetone kinase, DhaK subunit CLH_0094 113198 - 113836 + | dihydroxyacetone kinase, L subunit CLH_0095 113839 - 114228 + | dihydroxyacetone kinase, phosphotransfer subunit TERM 137 114237 - 114276 + F 80 -6 -5.25735 | opp_overlap 114239, overlap 114231 114239 TTCTTAACATAAAGA TAGTTGCTTTATATTATT TTTA ATTAATATAAAGTAGCTG TTTTTGATTTTTTAA TERM 138 114239 - 114274 + F 73 -6.4 -4.22041 | opp_overlap 114239, overlap 114237 114231 CTTAACATAAAGATA GTTGCTTTATATTATT TTTA ATTAATATAAAGTAGC TGTTTTTGATTTTTT TERM 139 114632 - 114596 - f 90 -12.5 -2.9518 | opp_overlap 114597 GGTAACACGTATATA CGTCTCTATATAGGTTT AAT ATACCTATATAGAGACT TTTTTGATTTATAAA TERM 140 114597 - 114631 + F 100 -16 -5.42514 | opp_overlap 114596 GTAACACGTATATAC GTCTCTATATAGGTTT AAT ATACCTATATAGAGAC TTTTTTGATTTATAA TERM 141 115023 - 115013 - g 70 -3.2 -5.2291 | ATAGCAGAAGAAAAA GGAA TTA CTCC AATAGAACATGTAGA metG 114812 - 116749 + | methionyl-tRNA synthetase TERM 142 116900 - 116870 - f 100 -12.7 -5.40279 | TAAAATAAAATAAAA GGAGCACCTCA TTTAGGGGG TGAGGTGCTCC GTAACCACTAATATA CLH_0097 117053 - 117850 + | putative deoxyribonuclease TERM 143 117870 - 117897 + F 95 -9.4 -4.78764 | opp_overlap 117870, overlap 117872 AAGGTAAAATATTAA TTGGAATATTTT TGAA AAAATATTCCGA TTTTTCATAAGTTTC TERM 144 117872 - 117895 + F 79 -9.8 -2.6662 | opp_overlap 117870, overlap 117870 GGTAAAATATTAATT GGAATATTTT TGAA AAAATATTCC GATTTTTCATAAGTT TERM 145 118229 - 118200 - g 71 -7.3 -3.76107 | opp_overlap 118206 118209, overlap 118203 118206 AGGCAAAAATCATAA TAACAACAATTGC TGTG GCGATTGTTATTA CAGCGACATTAATGA CLH_0098 118133 - 119179 + | 3D/G5 domain protein TERM 146 119191 - 119212 + F 100 -7.4 -6.4275 | GTAGTTGATTTTTAG GAGATAAC ATCTTG GTTATCTC TTTTTTTTATTTTTA TERM 147 119414 - 119404 - g 77 -5.4 -5.0133 | GATGCTGTTAAAAAA GCAT TAG ATGC TGAAATAATAGCAGT CLH_0099 119347 - 119901 + | putative primase homolog TERM 148 120350 - 120321 - g 74 -8.1 -3.62816 | overlap 120322 TAAAGAGAATCATAA GTTTGAATCATTA ACTA TAATGATTCAAAA AGAAGTAGCGGAAAG TERM 149 120349 - 120322 - g 87 -11.6 -2.76605 | overlap 120321 AAAGAGAATCATAAG TTTGAATCATTA ACTA TAATGATTCAAA AAGAAGTAGCGGAAA ksgA 119905 - 120756 + | dimethyladenosine transferase CLH_0101 120949 - 122385 + | hypothetical protein CLH_0102 122396 - 122965 + | hypothetical protein TERM 150 122998 - 123046 + F 95 -12.1 -3.29829 | opp_overlap 123000, overlap 123000 ATGTATAAGTATTAT AATTTAAGTATCATGGAGGGATT AAC AATTCATCTATGATACTTAAATA TTATAAGGAGATATG TERM 151 123044 - 123000 - f 91 -10.3 -3.48684 | opp_overlap 122998 123000 GTATAAGTATTATAA TTTAAGTATCATGGAGGGATT AAC AATTCATCTATGATACTTAAA TATTATAAGGAGATA TERM 152 123000 - 123044 + F 100 -14.7 -3.21593 | opp_overlap 123000, overlap 122998 GTATAAGTATTATAA TTTAAGTATCATGGAGGGATT AAC AATTCATCTATGATACTTAAA TATTATAAGGAGATA TERM 153 123573 - 123583 + G 76 -4 -5.4756 | ACTCAAATTTATTCA TCAA TTT TTGA TTTTTTATTAGGATT lgt 123063 - 123821 + | prolipoprotein diacylglyceryl transferase CLH_0104 123822 - 124655 + | putative lipoprotein CLH_0105 124671 - 125513 + | Mrp protein CLH_0106 125580 - 125768 + | hypothetical protein TERM 154 125806 - 125774 - T 100 -13.7 -5.89921 | opp_overlap 125774 AGTAGAATAAAAAAA TGTGGTGTTAGAAAT TTA ATTTTTAACACCACA TTTTTATATCTATTT TERM 155 125774 - 125806 + T 100 -15.9 -5.1104 | opp_overlap 125774 AGTAGAATAAAAAAA TGTGGTGTTAGAAAT TTA ATTTTTAACACCACA TTTTTATATCTATTT CLH_0107 126605 - 125928 - | probable proton-coupled thiamine transporter YuaJ CLH_0108 127067 - 126861 - | hypothetical protein TERM 156 127234 - 127196 - R 100 -17.9 -5.79595 | TTTTAAAATAAAAAA TGTCTTGCTTTAAAATA TTATT TATTTTAAAGCAAGACA CAAAATTAATAAAGG CLH_0109 127692 - 127240 - | transcriptional regulator, PadR family CLH_0110 128542 - 127694 - | DegV family protein TERM 157 128576 - 128619 + H 95 -13.6 -2.96395 | opp_overlap 128579 128582 128584 128597, overlap 128579 128580 128581 128584 ATATATTCTATTTAT TAATTATATCACTATAGATA ACTA TATCAATAGTGATATAGTTA TCTATAGTGATAAGT TERM 158 128633 - 128579 - H 100 -17.1 -3.18582 | gap 1, opp_overlap 128579 128576 128580 128581 128584, overlap 128582 128584 128597 TATTCTATTTATTAA TTATATCACTATAGATAACTATATCA ATAG TGATATAGTTATCTATAGTGATA-AG TTCTTAGATAATATT TERM 159 128579 - 128616 + H 95 -10.9 -3.62616 | opp_overlap 128579 128582 128584 128597, overlap 128576 128580 128581 128584 TATTCTATTTATTAA TTATATCACTATAGATA ACTA TATCAATAGTGATATAG TTATCTATAGTGATA TERM 160 128580 - 128633 + H 100 -20.9 -3.70511 | opp_overlap 128579 128582 128584 128597, overlap 128579 128576 128581 128584 ATTCTATTTATTAAT TATATCACTATAGATAACTATATCA ATAG TGATATAGTTATCTATAGTGATAAG TTCTTAGATAATATT TERM 161 128581 - 128632 + H 100 -22.2 -2.81584 | opp_overlap 128579 128582 128584 128597, overlap 128579 128576 128580 128584 TTCTATTTATTAATT ATATCACTATAGATAACTATATCA ATAG TGATATAGTTATCTATAGTGATAA GTTCTTAGATAATAT TERM 162 128631 - 128582 - H 100 -25.7 -2.79098 | opp_overlap 128579 128576 128581 128580 128584, overlap 128579 128584 128597 TCTATTTATTAATTA TATCACTATAGATAACTATATCA ATAG TGATATAGTTATCTATAGTGATA AGTTCTTAGATAATA TERM 163 128629 - 128584 - H 100 -23.9 -2.94199 | opp_overlap 128579 128576 128584 128581 128580, overlap 128582 128579 128597 TATTTATTAATTATA TCACTATAGATAACTATATCA ATAG TGATATAGTTATCTATAGTGA TAAGTTCTTAGATAA TERM 164 128584 - 128629 + H 100 -23.9 -2.66602 | opp_overlap 128582 128579 128584 128597, overlap 128579 128576 128581 128580 TATTTATTAATTATA TCACTATAGATAACTATATCA ATAG TGATATAGTTATCTATAGTGA TAAGTTCTTAGATAA TERM 165 128616 - 128597 - H 72 -8 -3.62616 | opp_overlap 128579 128576 128584 128581 128580, overlap 128584 128582 128579 TATCACTATAGATAA CTATATCA ATAG TGATATAG TTATCTATAGTGATA TERM 166 130517 - 130507 - g 74 -4 -5.28683 | AGCAAGATCAAAAAA CATT TGG AATG GTAAAAGGTATTACG nrdD 128841 - 130946 + | anaerobic ribonucleoside-triphosphate reductase TERM 167 130988 - 131011 + F 100 -12.6 -5.25656 | AGCATTAAATTTGAG TGAGGATACT AAAC AGTATCCTCA TTTTTTAGTACTTTT nifV 131374 - 132528 + | homocitrate synthase TERM 168 133988 - 134005 + G 75 -7.1 -4.10161 | overlap 133985 TGCCTGAAAAGTTTA TCATAGA TGAT TCTATGA TTTTAGAACCTGCTA CLH_0113 132706 - 134628 + | putative aconitate hydratase TERM 169 134711 - 134677 - f 89 -8.9 -4.62783 | opp_overlap 134648 134677 TATCTATGTCAAAAA GACTTTCTTAAAT TTTTCATTT ATTTAAGAAAGTC TTTTTTATTTTAATA TERM 170 134677 - 134711 + F 100 -8.9 -5.83211 | opp_overlap 134677, overlap 134648 TATCTATGTCAAAAA GACTTTCTTAAAT TTTTCATTT ATTTAAGAAAGTC TTTTTTATTTTAATA CLH_0114 134848 - 137103 + | putative signaling protein TERM 171 137180 - 137223 + F 100 -19.4 -5.06735 | opp_overlap 137174 137187, overlap 137174 TATAATTAAGCGTTT TAGAAAAGCTACTGTATATT AAAA AATATATAGTAGCTTTTCTA TTTTTGTGATTTATA TERM 172 137216 - 137187 - f 93 -9.5 -4.37658 | opp_overlap 137174 137180, overlap 137174 AAGCGTTTTAGAAAA GCTACTGTATATT AAAA AATATATAGTAGC TTTTCTATTTTTGTG TERM 173 137604 - 137592 - g 70 -4.9 -4.64766 | CTTATATGGCAAAAA TTTTC AAA GAAAA TAATAAAAATATTTG nrdG 137327 - 137836 + | anaerobic ribonucleoside-triphosphate reductase activating protein CLH_0116 137913 - 138521 + | DNA-3-methyladenine glycosylase TERM 174 138687 - 138631 - f 73 -2.5 -5.67529 | opp_overlap 138642 138646, overlap 138639 138642 138647 AATTAAAAATAAAAA TCATAAAATAAGAAAACTCTTCATTAT TAT ATAATGGAGAGCTTTCTTCGTAAATAA ATAATTAATGTAGTA TERM 175 138679 - 138639 - f 100 -10.7 -4.73912 | opp_overlap 138642 138646, overlap 138631 138642 138647 ATAAAAATCATAAAA TAAGAAAACTCTTCATTAT TAT ATAATGGAGAGCTTTCTTC GTAAATAAATAATTA TERM 176 138676 - 138642 - f 100 -12.4 -4.42088 | opp_overlap 138642 138646, overlap 138639 138631 138647 AAAATCATAAAATAA GAAAACTCTTCATTAT TAT ATAATGGAGAGCTTTC TTCGTAAATAAATAA TERM 177 138642 - 138676 + F 93 -12.4 -3.18912 | opp_overlap 138639 138631 138642 138647, overlap 138646 AAAATCATAAAATAA GAAAACTCTTCATTAT TAT ATAATGGAGAGCTTTC TTCGTAAATAAATAA TERM 178 138646 - 138672 + F 75 -7.4 -4.258 | opp_overlap 138642 138639 138631 138647, overlap 138642 TCATAAAATAAGAAA ACTCTTCATTAT TAT ATAATGGAGAGC TTTCTTCGTAAATAA TERM 179 138671 - 138647 - f 100 -8.7 -5.12916 | opp_overlap 138646 138642, overlap 138642 138639 138631 CATAAAATAAGAAAA CTCTTCATTAT TAT ATAATGGAGAG CTTTCTTCGTAAATA TERM 180 138828 - 138813 - f 77 -3.4 -5.76633 | TGATAGATAAAAAAA TTAAAA TATT TTTTAA AATGCTTTAAAACTC CLH_0117 138994 - 139998 + | catabolite control protein A TERM 181 139982 - 140007 + F 83 -7.8 -4.62471 | opp_overlap 139981 139987, overlap 139987 CTGAAAGAGAAACTG TAAAATGGTT AAAATA AACCATTTTA TTTTTGAAGGTTACG CLH_0118 140078 - 141739 + | oligo-1,6-glucosidase CLH_0119 141831 - 143111 + | sugar ABC transporter substrate-binding protein CLH_0120 143136 - 143999 + | ABC-type sugar transport system, permease component TERM 182 144041 - 144031 - g 74 -2.6 -5.59655 | TAAATCAAGAAAAAA TATA AAA TATA AAACAAATAAAGAAG CLH_0121 143999 - 144868 + | sugar ABC transporter permease TERM 183 144887 - 144911 + T 100 -8.8 -5.66868 | opp_overlap 144887 ATAAATAGCAAAAAA TGAATCTATA TATTT TATAGATTCA TTTTTTTAGTTGCTT TERM 184 144911 - 144887 - T 100 -8.8 -5.34055 | opp_overlap 144887 ATAAATAGCAAAAAA TGAATCTATA TATTT TATAGATTCA TTTTTTTAGTTGCTT CLH_0122 145170 - 145006 - | hypothetical protein TERM 185 145420 - 145443 + G 76 -8.4 -3.58184 | opp_overlap 145429, overlap 145424 145427 145429 AGAAACGTAGACGTA TTACTATAAT TACA ATTATAGTAA TTATAATTGTAATAT TERM 186 145455 - 145429 - g 73 -8.3 -3.44527 | opp_overlap 145420 145424 145427 145429 GACGTATTACTATAA TTACAATTATA GTAAT TATAATTGTAA TATTTGGAATTTTGA TERM 187 145429 - 145455 + G 79 -9 -3.46106 | opp_overlap 145429, overlap 145420 145424 145427 GACGTATTACTATAA TTACAATTATAG TAA TTATAATTGTAA TATTTGGAATTTTGA CLH_0123 145335 - 146498 + | encapsulation protein CapA TERM 188 146543 - 146495 - f 95 -12.3 -3.61902 | gap 1, opp_overlap 146501 146506, overlap 146506 TTTTACTATAGATAA TTAATAA-AAAAGCATTTGAGA ATTTAA TCTCAAATGCTTTTCTTACTAA AATTCTAGAATTCAG TERM 189 146501 - 146536 + F 87 -10.7 -3.19653 | opp_overlap 146495 146506, overlap 146506 TATAGATAATTAATA AAAAAGCATTTGAGA ATTTAA TCTCAAATGCTTTTC TTACTAAAATTCTAG TERM 190 146531 - 146506 - f 100 -10.6 -5.57396 | opp_overlap 146506 146501, overlap 146495 ATAATTAATAAAAAA GCATTTGAGA ATTTAA TCTCAAATGC TTTTCTTACTAAAAT TERM 191 146506 - 146531 + F 100 -10.6 -4.71828 | opp_overlap 146495 146506, overlap 146501 ATAATTAATAAAAAA GCATTTGAGA ATTTAA TCTCAAATGC TTTTCTTACTAAAAT TERM 192 146637 - 146627 - f 73 -2.6 -5.77988 | opp_overlap 146627 ATACATATAAAAAAA TTAA TGA TTAA TTAGTTCTTTACCCC TERM 193 147574 - 147552 - f 70 -6.2 -4.30719 | overlap 147553 TTGTGTTATAATAAA GGTGGGACTT AAA ACGTCCCACT AAATAAGTCATGGGT TERM 194 147573 - 147553 - f 80 -9.7 -3.1811 | overlap 147552 TGTGTTATAATAAAG GTGGGACTT AAA ACGTCCCAC TAAATAAGTCATGGG CLH_0124 147624 - 148220 + | hypothetical protein CLH_0125 148239 - 149084 + | phage capsid family TERM 195 149098 - 149127 + F 73 -6.6 -4.37092 | gap 2, opp_overlap 149096 149098 149100, overlap 149099 149100 AATATGTAATAAACA TA-GGG-TGCGTCA AATT TGACGCATCCCCTA TTTTATAAAGAAGGT TERM 196 149099 - 149125 + F 70 -7.3 -3.79419 | gap 1, opp_overlap 149096 149098 149100, overlap 149098 149100 ATATGTAATAAACAT AGGG-TGCGTCA AATT TGACGCATCCCC TATTTTATAAAGAAG TERM 197 149100 - 149124 + F 82 -10.8 -2.8733 | gap 1, opp_overlap 149096 149098 149100, overlap 149099 149098 TATGTAATAAACATA GGG-TGCGTCA AATT TGACGCATCCC CTATTTTATAAAGAA TERM 198 149123 - 149100 - f 93 -11 -3.42809 | opp_overlap 149100 149099 149098, overlap 149096 149098 TATGTAATAAACATA GGGTGCGTCA AATT TGACGCATCC CCTATTTTATAAAGA CLH_0126 149149 - 149556 + | hypothetical protein CLH_0127 149558 - 149803 + | hypothetical protein TERM 199 149815 - 149837 + T 86 -4.1 -6.0458 | opp_overlap 149817, overlap 149817 TTAAGAACATAAAAA AAGCACTCA ATATA TGGGTGCTA TTTTTTTTGATTTCT TERM 200 149835 - 149817 - T 86 -4.5 -5.86465 | opp_overlap 149815 149817 AAGAACATAAAAAAA GCACTCA ATATA TGGGTGC TATTTTTTTTGATTT TERM 201 149817 - 149835 + T 77 -6.7 -4.63519 | opp_overlap 149817, overlap 149815 AAGAACATAAAAAAA GCACTCA ATATA TGGGTGC TATTTTTTTTGATTT CLH_0128 150353 - 149835 - | dna-binding protein CLH_0129 150549 - 150740 + | hypothetical protein TERM 202 151097 - 151086 - g 75 -5.8 -4.72986 | overlap 151071 CATTTGCAGTAAAAA CACC AAAT GGTG GAACACACATATATT CLH_0130 150758 - 152896 + | putative primase CLH_0131 152920 - 153180 + | hypothetical protein TERM 203 153215 - 153191 - f 90 -4.3 -6.23545 | overlap 153213 TTTAAATAAAAAAAA GTAGCATTTCC GAA AGAAACACCAC AAATATACGCAATAT CLH_0132 153390 - 153707 + | hypothetical protein TERM 204 153758 - 153790 + F 78 -6.3 -5.01535 | overlap 153762 GTTAATTACTAATGA TAGGGAGGTTCAGCA TAA TGTTGAGCCTCTTAA TTTTTATAATTATAG TERM 205 153762 - 153786 + F 100 -11.5 -3.90511 | overlap 153758 ATTACTAATGATAGG GAGGTTCAGCA TAA TGTTGAGCCTC TTAATTTTTATAATT CLH_0133 153822 - 154991 + | phage integrase TERM 206 154982 - 155003 + T 100 -10.9 -5.19328 | TTTATTTAATGCTAT GGGGGACTA AATT TAGTCCTCC TTTTTGTTATAAACT TERM 207 155106 - 155084 - T 93 -9.3 -4.39287 | opp_overlap 155081, overlap 155073 CTAAGTACACTAAAA GTACACTAA AAAAA TTAGTGTAC TGGTAGCTTAAAGTA asnS 156751 - 155357 - | asparaginyl-tRNA synthetase TERM 208 156655 - 156645 - G 70 -5.4 -4.62054 | opp_overlap 156645, overlap 156640 TCAATGAAACCAAAA GCAT TGG ATGC TCTTAAAGTTCTTAT TERM 209 156885 - 156862 - R 100 -8.8 -6.04378 | opp_overlap 156862 AAAGTATAAAAAAAA CTCCCGCCCC ATAT GGGACGAAAG TGTTAATTCGTGGTA CLH_0135 157856 - 157158 - | Ser/Thr protein phosphatase family protein TERM 210 157320 - 157332 + g 71 -7.7 -3.62096 | opp_overlap 157313, overlap 157313 AGTAAGATTAGGTCT GCCTA TTT TAGGC TTTCCAATACTACCG CLH_0136 158118 - 159194 + | metallopeptidase, family M24 TERM 211 159272 - 159244 - T 100 -9.8 -5.243 | opp_overlap 159244 TAAAGTATTAAAAAA TGATTGAAGCAT TTACT ATACTTCAATCA TTTTTTTCTATTTAT TERM 212 159244 - 159272 + T 100 -7.6 -5.90231 | opp_overlap 159244 TAAAGTATTAAAAAA TGATTGAAGCAT TTACT ATACTTCAATCA TTTTTTTCTATTTAT murC 160681 - 159299 - | UDP-N-acetylmuramate--alanine ligase TERM 213 161005 - 160992 - g 72 -6.7 -4.12841 | AAAATTAAGCAGAAA CAACC GAGT GGTTG CTATAACAAAAATTT purR 160972 - 161787 + | pur operon repressor TERM 214 162073 - 162062 - g 78 -5.8 -4.91109 | opp_overlap 162061 TGCCTAGTAGAAAAA CTCC AACT GGAG AATTTAAAGACATCG CLH_0139 161908 - 162183 + | putative septation protein spoVG TERM 215 162206 - 162232 + F 70 -3.8 -5.25803 | opp_overlap 162211, overlap 162211 ATAATTGGGAAAAAA TGAGAGGAAG ATAAATG CTTCCTTTTA TTTTTTGTACAAATT TERM 216 162211 - 162227 + F 75 -3.7 -5.49579 | opp_overlap 162211, overlap 162206 TGGGAAAAAATGAGA GGAAG ATAAATG CTTCC TTTTATTTTTTGTAC TERM 217 162674 - 162684 + G 70 -6.8 -3.90588 | opp_overlap 162681 GTTGCAGTTTTTGCT GGAG ATA CTCC TTTAATTAAGGAATC TERM 218 163573 - 163541 - g 82 -4.4 -5.65927 | GATGGAAAGAAAAAA TATAAAACTATTAT TGGTG ACCATAGTTTTATA GGATGTAATACAAAT glmU 162371 - 163738 + | UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase prs 163784 - 164743 + | ribose-phosphate diphosphokinase TERM 219 164796 - 164757 - f 74 -8.9 -2.99319 | gap 1, opp_overlap 164765, overlap 164765 AATCTTGTATACATA TAATAAAACCTCCTATGA GCATA TCATGGGAGG-TTTATTA ACATGTGTTTATTAA TERM 220 164765 - 164789 + F 95 -10.8 -4.2008 | opp_overlap 164757 164765 ATACATATAATAAAA CCTCCTATGA GCATA TCATGGGAGG TTTATTAACATGTGT TERM 221 164789 - 164765 - f 88 -8.6 -4.88495 | opp_overlap 164765, overlap 164757 ATACATATAATAAAA CCTCCTATGA GCATA TCATGGGAGG TTTATTAACATGTGT TERM 222 165275 - 165237 - g 77 -7.6 -4.0942 | opp_overlap 165237 165245 165248, overlap 165238 165241 GATGCAGCATAGAAA GTGACAAATCAGATACAA TAT CTATATCTGATTTGTCGG TAAATTTAAGTACTT TERM 223 165274 - 165238 - g 88 -11.1 -3.0517 | opp_overlap 165237 165245 165248, overlap 165237 165241 ATGCAGCATAGAAAG TGACAAATCAGATACAA TAT CTATATCTGATTTGTCG GTAAATTTAAGTACT TERM 224 165271 - 165241 - g 87 -11.4 -2.74244 | opp_overlap 165237 165245 165248, overlap 165238 165237 CAGCATAGAAAGTGA CAAATCAGATACAA TAT CTATATCTGATTTG TCGGTAAATTTAAGT TERM 225 165486 - 165476 - g 71 -4 -5.09762 | AGGCTAAGAGAAAAA TTTG AAC CAAA TGAAAATTATAAAAT CLH_0142 164858 - 165544 + | two-component response regulator pth 165625 - 166200 + | peptidyl-tRNA hydrolase TERM 226 166664 - 166685 + G 70 -7.5 -3.34895 | opp_overlap 166659 166654 AGGAACTGAAGTTAA TTTTAATGA AATA TCATTAAAA TTAATTGAAAGTGGA TERM 227 166777 - 166803 + G 74 -6.1 -4.59773 | gap 1 ATATATTCCCAACCT GTTCAACT-TAT CCTT ATAGAGTTGAAC TTTTTGGAGATGAAG TERM 228 166914 - 166899 - g 70 -6.2 -4.07568 | GTGTTTCCTGCAAAA GAGATA ATAG TATCTC AAGAATCAATGACTA TERM 229 168859 - 168849 - g 71 -4 -5.02439 | opp_overlap 168849 AGACAATTAGAAAAA GAAA TGC TTTC ATTTATGGATCAAGA mfd 166215 - 169718 + | transcription-repair coupling factor CLH_0145 169854 - 170885 + | foldase protein PrsA TERM 230 170906 - 170944 + F 100 -16.4 -6.32017 | opp_overlap 170906 ATTGAATCATAAAAA TGCTTCTAAATAAGTAAT TTA ATTGCTTATTTAGAGGCA TTTTTTTTATTTATT TERM 231 170944 - 170906 - f 100 -12 -4.98857 | opp_overlap 170906 ATTGAATCATAAAAA TGCTTCTAAATAAGTAAT TTA ATTGCTTATTTAGAGGCA TTTTTTTTATTTATT spoVT 171077 - 171628 + | stage V sporulation protein T TERM 232 172570 - 172586 + G 78 -8.1 -3.92641 | opp_overlap 172570 AAAGCATCTGTAATA GTTAATG TTC CATTAAC TTTATCAATGGCATT TERM 233 172586 - 172570 - g 70 -8.1 -3.05536 | opp_overlap 172570 AAAGCATCTGTAATA GTTAATG TTC CATTAAC TTTATCAATGGCATT CLH_0147 171730 - 173265 + | stage V sporulation protein B TERM 234 173616 - 173606 - g 71 -2.6 -5.43553 | ATGTAAAAAAGAAAA TATA GAT TATA AGGTTATTCCAGCTG CLH_0148 173280 - 174746 + | MazG family protein hup 174948 - 175226 + | DNA-binding protein HU TERM 235 175260 - 175233 - f 100 -8.4 -5.61913 | opp_overlap 175236 175239, overlap 175235 175236 AATAAATAGAAAAAA TATGAACCCGAG TTTT CTCGGGTTCTTT TAACAAAGGGAGCAA TERM 236 175258 - 175235 - f 100 -11 -4.40478 | opp_overlap 175236 175239, overlap 175233 175236 TAAATAGAAAAAATA TGAACCCGAG TTTT CTCGGGTTCT TTTAACAAAGGGAGC TERM 237 175236 - 175257 + F 100 -14.5 -4.07568 | opp_overlap 175235 175233 175236, overlap 175239 AAATAGAAAAAATAT GAACCCGAG TTTT CTCGGGTTC TTTTAACAAAGGGAG TERM 238 175257 - 175236 - f 100 -14.5 -3.21847 | opp_overlap 175236 175239, overlap 175235 175233 AAATAGAAAAAATAT GAACCCGAG TTTT CTCGGGTTC TTTTAACAAAGGGAG TERM 239 175239 - 175254 + F 95 -10.4 -4.17048 | opp_overlap 175236 175235 175233, overlap 175236 TAGAAAAAATATGAA CCCGAG TTTT CTCGGG TTCTTTTAACAAAGG CLH_0150 175278 - 175538 + | S4 domain protein yabP 175671 - 175964 + | sporulation protein YabP yabQ 176018 - 176374 + | spore cortex biosynthesis protein YabQ CLH_0153 176453 - 176746 + | cell division protein CLH_0154 176802 - 177218 + | RNA-binding protein TERM 240 177295 - 177331 + F 75 -3.9 -5.55695 | gap 1, opp_overlap 177294 177295, overlap 177295 177296 TTATGTTATATAAAG C-CCTTATAAACAGGT TTTTAT GCCTATTTATAAGGCG TTTTTTATGTTATTA TERM 241 178119 - 178098 - f 91 -10.3 -3.72576 | opp_overlap 178083 178098 GTCTTCGGCACCAAA GACTTAAGT TATT ACTTAAGTC TTTTTTTATATTTAA TERM 242 178098 - 178119 + F 100 -10.3 -5.88197 | opp_overlap 178098, overlap 178083 GTCTTCGGCACCAAA GACTTAAGT TATT ACTTAAGTC TTTTTTTATATTTAA TERM 243 178281 - 178327 + F 86 -7.6 -4.82901 | gap 1 TTAAAAGTTATAAAA TAGGCCGTATTAGATTAAAGC TTTTTT GCTT-GATCTAGTATGGTCTA TTTTTATAGAAAAAC spoIIE 178680 - 181061 + | stage II sporulation protein E TERM 244 181070 - 181094 + F 93 -7.9 -5.10461 | opp_overlap 181065 181070, overlap 181053 TGTTTAATTATAAAA CTGCTGTATAT TAA AAATGCAGCAG TTTTTATTGGGTAGA CLH_0163 181200 - 182606 + | tRNA(Ile)-lysidine synthase hpt 182612 - 183151 + | hypoxanthine phosphoribosyltransferase TERM 245 184426 - 184407 - g 86 -9.4 -3.73302 | CAAGATATGGAAGAA GCTATAAC GAGA GTTATAGC AGGTCCAGAAAAGAA CLH_0165 183225 - 185030 + | putative Cell division protease FtsH homolog TERM 246 185069 - 185037 - f 100 -16.7 -4.17109 | opp_overlap 185037 AATAATTAAAGTAAA GAGATTTTTAAAAGA TAT TCTTTTAAAAATCTC TTTTTTATTATAAAG TERM 247 185037 - 185069 + F 100 -16.7 -5.55769 | opp_overlap 185037 AATAATTAAAGTAAA GAGATTTTTAAAAGA TAT TCTTTTAAAAATCTC TTTTTTATTATAAAG fhs 185252 - 186922 + | formate--tetrahydrofolate ligase TERM 248 187000 - 187015 + F 75 -6.8 -4.49937 | opp_overlap 186999 187000 AATTACTAAATTAAG GCAGCT TTAG GGCTGC TTTTAATATTATTAA TERM 249 187383 - 187393 + G 72 -6.8 -4.24002 | opp_overlap 187382 GACAGAATAGTTAAT GCAG TTG CTGC TTTTGAAATTTACAA CLH_0167 187044 - 187817 + | type III pantothenate kinase TERM 250 188231 - 188219 - g 78 -2.7 -5.9003 | overlap 188211 AAAGCAATAAAAAAA GTTTC TAA AAAAC CTGTAACGGTAAAAT CLH_0168 187823 - 188788 + | tRNA-dihydrouridine synthase B TERM 251 189128 - 189103 - g 77 -6.3 -4.74103 | opp_overlap 189104, overlap 189104 GTTTGAATGGAAAAA GCTTGTATAAT TTAA ATTATACAAGT GAATTTCAAATGCAG TERM 252 189127 - 189104 - g 85 -9.8 -3.4398 | opp_overlap 189104, overlap 189103 TTTGAATGGAAAAAG CTTGTATAAT TTAA ATTATACAAG TGAATTTCAAATGCA TERM 253 189104 - 189127 + G 78 -9.8 -2.65354 | opp_overlap 189104 189103 TTTGAATGGAAAAAG CTTGTATAAT TTAA ATTATACAAG TGAATTTCAAATGCA TERM 254 189628 - 189616 - g 72 -4.9 -4.946 | ATGAAATATTAAAAA GTAAT GAT ATTAC ACTTGAATCAATACT CLH_0169 188976 - 189680 + | hypothetical protein greA 189795 - 190277 + | transcription elongation factor GreA TERM 255 190863 - 190851 - g 70 -4.9 -4.80487 | overlap 190842 190841 CAGAAGTAAAAGAAA CTTTT ATA AAAAG AAGTAAAATTATTTC lysS 190322 - 191827 + | lysyl-tRNA synthetase TERM 256 191849 - 191884 + T 100 -11.4 -4.386 | gap 1, opp_overlap 191838 191854 191855, overlap 191855 191879 GTAATTTGATTTTAT CAAAAGCCCCCATATTA TAA TATTATGGG-GCTTTTG TTTTATAAAAGATTA TERM 257 191855 - 191879 + T 78 -5.7 -5.18371 | opp_overlap 191854 191855, overlap 191849 TGATTTTATCAAAAG CCCCCATATTA TAA TATTATGGGGC TTTTGTTTTATAAAA TERM 258 192255 - 192213 - T 78 -9.5 -3.0395 | opp_overlap 192214, overlap 192216 192228 192252 192253 ATATAGTTTTTAATA GGAGTTTTATAAAAGTAGA TAAAG TCTATTTTTATAAAACTCT TTTTATATTATAAAA TERM 259 192214 - 192254 + T 100 -15.9 -5.1523 | opp_overlap 192213 192216 192228 192252 192253 TATAGTTTTTAATAG GAGTTTTATAAAAGTAGAT AAA GTCTATTTTTATAAAACTC TTTTTATATTATAAA TERM 260 192252 - 192216 - T 79 -9.8 -2.74192 | opp_overlap 192214, overlap 192213 192228 TAGTTTTTAATAGGA GTTTTATAAAAGTAGA TAAAG TCTATTTTTATAAAAC TCTTTTTATATTATA TERM 261 192274 - 192252 - T 77 -7.2 -4.38712 | opp_overlap 192214, overlap 192213 192253 TCTATTTTTATAAAA CTCTTTTTAT ATT ATAAAAAGAA ACTAATAATATTTAT TERM 262 192273 - 192253 - T 72 -8.5 -3.22906 | opp_overlap 192214, overlap 192213 192252 CTATTTTTATAAAAC TCTTTTTAT ATT ATAAAAAGA AACTAATAATATTTA TERM 263 192667 - 192625 - T 78 -9.5 -3.0395 | opp_overlap 192626, overlap 192628 192640 192664 192665 ATATAGTTTTTAATA GGAGTTTTATAAAAGTAGA TAAAG TCTATTTTTATAAAACTCT TTTTATAATATAAAA TERM 264 192626 - 192666 + T 100 -15.9 -4.95155 | opp_overlap 192625 192628 192640 192664 192665 TATAGTTTTTAATAG GAGTTTTATAAAAGTAGAT AAA GTCTATTTTTATAAAACTC TTTTTATAATATAAA TERM 265 192664 - 192628 - T 79 -9.8 -2.74192 | opp_overlap 192626, overlap 192625 192640 TAGTTTTTAATAGGA GTTTTATAAAAGTAGA TAAAG TCTATTTTTATAAAAC TCTTTTTATAATATA TERM 266 192686 - 192664 - T 77 -7.2 -4.38712 | opp_overlap 192626, overlap 192625 192665 TCTATTTTTATAAAA CTCTTTTTAT AAT ATAAAAAGAA ACTAATAATATTTAT TERM 267 192685 - 192665 - T 72 -8.5 -3.22906 | opp_overlap 192626, overlap 192625 192664 CTATTTTTATAAAAC TCTTTTTAT AAT ATAAAAAGA AACTAATAATATTTA TERM 268 193076 - 193034 - T 78 -9.5 -3.02829 | opp_overlap 193035, overlap 193037 193049 TATAGTTTTTTAATA GGAGTTTTATAAAAGTAGA TAAAG TCTATTTTTATAAAACTCT TTTTTATTAAATTTA TERM 269 193035 - 193075 + T 100 -15.9 -5.52096 | opp_overlap 193034 193037 193049 ATAGTTTTTTAATAG GAGTTTTATAAAAGTAGAT AAA GTCTATTTTTATAAAACTC TTTTTTATTAAATTT TERM 270 193073 - 193037 - T 79 -9.8 -2.73994 | opp_overlap 193035, overlap 193034 193049 AGTTTTTTAATAGGA GTTTTATAAAAGTAGA TAAAG TCTATTTTTATAAAAC TCTTTTTTATTAAAT TERM 271 193125 - 193095 - T 100 -18.6 -3.48807 | overlap 193088 TTATTAAATTTACAA TAGCTTGCACTTAA TTA TTAAGTGCAAGCTA AAAAGAAAACAGATT CLH_0175 193882 - 193163 - | hypothetical protein TERM 272 194335 - 194304 - g 75 -8.8 -3.44527 | overlap 194291 194313 TATCCAGGACCACAA GGACCTAAAGGA GACCCGGG TCCTCCAGGTCC AAAAGGTGAAAAAGG TERM 273 195018 - 195028 + G 70 -6.8 -3.96841 | opp_overlap 195017, overlap 195016 GATAATTACAATATT GCTG TGG CAGC TTATGTTTATTGGGG CLH_0176 194016 - 195407 + | hypothetical protein TERM 274 195654 - 195641 - g 70 -3.1 -5.22006 | overlap 195642 GTACCAGAAGAAAAA CCTTC AATT GAAGA AATTGATAAAATAAG CLH_0177 195440 - 196600 + | hypothetical protein CLH_0178 196622 - 197413 + | Cna protein B-type domain TERM 275 197464 - 197508 + F 100 -11.9 -4.68539 | opp_overlap 197467, overlap 197467 TAGGCTTTTATATAA AAAGAGTTATTCTAATTTT TTTAACT AAAATTAGAATAACTCTTG TTTTATGATTTTAAT TERM 276 197505 - 197467 - f 100 -13.6 -4.96848 | opp_overlap 197464 197467 GCTTTTATATAAAAA GAGTTATTCTAATTTT TTTAACT AAAATTAGAATAACTC TTGTTTTATGATTTT TERM 277 197467 - 197505 + F 100 -13.6 -4.42088 | opp_overlap 197467, overlap 197464 GCTTTTATATAAAAA GAGTTATTCTAATTTT TTTAACT AAAATTAGAATAACTC TTGTTTTATGATTTT CLH_0179 197592 - 197735 + | hypothetical protein glyS 197802 - 199193 + | glycyl-tRNA synthetase TERM 278 199228 - 199265 + F 100 -12.3 -4.89852 | TAATAAATGTTATAG GTCATTTTAAGCTAGGG TAGT TCTTAGTTTAAAATGAC TTTTTATACATGTGA TERM 279 199316 - 199300 - f 73 -6.7 -4.22214 | overlap 199297 ATGTAGGGAAAATAA TGTTATA ATT TATAACA TATGGGGAATTTTAA murD 199381 - 200757 + | UDP-N-acetylmuramoylalanine--D-glutamate ligase TERM 280 200901 - 200864 - T 71 -5.8 -4.71463 | opp_overlap 200869, overlap 200869 AATTAAAAGAATAAA GAAAAGACTGATGT AGCTATAATG ACATCAGTCTTTTT GTTTAATTTTTTGTA TERM 281 200869 - 200896 + T 81 -5.7 -5.43974 | opp_overlap 200864 200869 AAAGAATAAAGAAAA GACTGATGT AGCTATAATG ACATCAGTC TTTTTGTTTAATTTT TERM 282 200896 - 200869 - T 78 -5.7 -5.20331 | opp_overlap 200869, overlap 200864 AAAGAATAAAGAAAA GACTGATGT AGCTATAATG ACATCAGTC TTTTTGTTTAATTTT CLH_0182 201908 - 200904 - | putative lipoprotein TERM 283 203899 - 203880 - R 75 -9.2 -2.65808 | opp_overlap 203883 203886, overlap 203877 203892 AGTCGTAACAAGGTA GCCGTAGG AGAA CCTGCGGC TGGATCACCTCCTTT TERM 284 204009 - 204030 + r 71 -8.1 -2.99649 | GTTGTTTCTGTTCAA TTTTGAGGG ATTT TCCTCAAAA TGTCTATGGGGGTAT TERM 285 204431 - 204446 + r 73 -9 -2.79915 | opp_overlap 204428 204431, overlap 204433 GAATGAGGAAACTCA CATGGG AAAC CCCATG TATCGTAAAGTGAAT TERM 286 204446 - 204431 - R 72 -9 -2.69489 | opp_overlap 204431 204433, overlap 204428 GAATGAGGAAACTCA CATGGG AAAC CCCATG TATCGTAAAGTGAAT TERM 287 204590 - 204573 - R 76 -8.5 -3.69902 | AGGAAAGAGCCCAAA CCAAAGA TTTA TCTTTGG GGTTGCGGACAGAAC TERM 288 204757 - 204742 - R 81 -10.4 -2.71011 | ACCTTGTGGGAAGCA GGGAGG ACCA CCTCCC AAGGCTAAATACTAC TERM 289 204831 - 204820 - R 75 -7.2 -4.2354 | GAAAGGTGAAAAGAA CCCC GGGA GGGG AGTGAAATAGAACCT TERM 290 205067 - 205057 - R 71 -6.8 -4.15453 | opp_overlap 205060 GAAGCGAGGGTAAAA CCTC GTG GAGG ACCGAACCACGTTGC TERM 291 205656 - 205640 - R 74 -8.7 -3.05343 | CCCACAGGCCGAATA CCTAAGG TTT CCTCAGG AAGGTTCGTCCGCTG TERM 292 207242 - 207265 + r 79 -9.8 -2.67694 | overlap 207239 ACAATTTATGTGTAA TTTTGAAAGA ATAA TCTTTCAAAA TAATCTGGTGATGAT TERM 293 207549 - 207570 + r 100 -8.1 -6.06529 | opp_overlap 207549 GCGCCTCCATTAAAA CCTTGAATT ATTT GATTCAAGG TTTTTTTTGTGTCTA TERM 294 207570 - 207549 - R 75 -7.4 -4.25104 | opp_overlap 207549 GCGCCTCCATTAAAA CCTTGAAT TATTTG ATTCAAGG TTTTTTTTGTGTCTA TERM 295 207713 - 207690 - R 74 -8.4 -3.31144 | opp_overlap 207692 TTTTTATGTGGATAA TTTATAGATT ATAT AATCTATAAA TATAAGATACGATTT TERM 296 207772 - 207760 - R 80 -6.3 -5.11718 | ATCAAAAAAAAAGAA CCTAT ATA ATAGG CAAGAAAAAATGTCT CLH_0191 208753 - 207806 - | magnesium and cobalt transporter CLH_0192 209030 - 209506 + | hypothetical protein TERM 297 209531 - 209573 + T 100 -19.7 -5.61881 | opp_overlap 209533 209535 209539 209543 AATAATTATGTTTAA TATATAAATAAAGGTACTC AAATA GAGTACCTTTATTTATATA TTTTTATTTTTAAAA TERM 298 209571 - 209533 - T 100 -17.9 -3.05268 | opp_overlap 209531, overlap 209535 209539 209543 TAATTATGTTTAATA TATAAATAAAGGTACTC AAATA GAGTACCTTTATTTATA TATTTTTATTTTTAA TERM 299 209569 - 209535 - T 100 -16.1 -3.08073 | opp_overlap 209531, overlap 209533 209539 209543 ATTATGTTTAATATA TAAATAAAGGTACTC AAATA GAGTACCTTTATTTA TATATTTTTATTTTT TERM 300 209565 - 209539 - T 100 -12.5 -4.2074 | opp_overlap 209531, overlap 209535 209533 209543 TGTTTAATATATAAA TAAAGGTACTC AAATA GAGTACCTTTA TTTATATATTTTTAT TERM 301 209561 - 209543 - T 89 -8.9 -4.68132 | opp_overlap 209531, overlap 209539 209535 209533 TAATATATAAATAAA GGTACTC AAATA GAGTACC TTTATTTATATATTT CLH_0193 210727 - 209567 - | amidohydrolase TERM 302 210666 - 210685 + g 76 -8 -3.87869 | opp_overlap 210666 210669, overlap 210669 TTATTATATAAATAA GAACTTAA ATCA TTAAGTTC TTTATCACAAGTTGA TERM 303 210685 - 210666 - G 80 -8 -4.16814 | opp_overlap 210666 210669, overlap 210669 TTATTATATAAATAA GAACTTAA ATCA TTAAGTTC TTTATCACAAGTTGA CLH_0194 210785 - 210898 + | hypothetical protein CLH_0195 210888 - 211058 + | putative CsfB protein TERM 304 211072 - 211056 - f 75 -5.3 -5.09225 | opp_overlap 211041 211056, overlap 211042 ATTTTATTTAAAAAA TAAAAAT TAG ATTTTTA CTTTATTAAGATTTA TERM 305 211092 - 211115 + F 70 -2.5 -5.45802 | opp_overlap 211094, overlap 211094 ATTAAGATTTATTAA AAGCTATAT TTAATT ATATAGCTA TTTTTCTTTTGGAAA CLH_0196 211211 - 211888 + | thymidylate kinase CLH_0197 212003 - 212335 + | protein from nitrogen regulatory protein P-II CLH_0198 212347 - 213279 + | DNA polymerase III subunits gamma and tau CLH_0199 213283 - 214191 + | PSP1 domain protein CLH_0200 214336 - 214506 + | hypothetical protein TERM 306 214531 - 214514 - T 81 -5.5 -5.31545 | opp_overlap 214514, overlap 214517 AAGAATAGTAAAAAA GATCGTC TATA GACGGTC TTTTTTTTATACATA TERM 307 214514 - 214531 + T 100 -7.7 -5.96219 | opp_overlap 214514 214517 AAGAATAGTAAAAAA GATCGTC TATA GACGGTC TTTTTTTTATACATA CLH_0201 215276 - 214638 - | hypothetical protein CLH_0202 215468 - 215923 + | transcriptional regulator CtsR CLH_0203 215938 - 216513 + | McsA CLH_0204 216497 - 217510 + | putative ATP:guanido phosphotransferase TERM 308 217945 - 217927 - g 74 -4 -5.23316 | overlap 217919 217939 TACTATATTAAAAAA TTTAAAAT TAG ATTTCAAA GAAATAAAAGATAAA CLH_0205 217541 - 219985 + | negative regulator of genetic competence ClpC/mecB TERM 309 219996 - 220052 + F 86 -5.6 -5.65927 | gap 1, opp_overlap 219989 219996, overlap 219991 ATTAACAATTTAAAA GTTATCTT-AAAATAACTTTAATGTAT TTAG ATGCATTATTGGTATTTTTAAGATAAC TTTTTTATTTACATA TERM 310 220564 - 220554 - g 74 -4 -5.26875 | TGGTCAAGTAAAAAA TAGT TAT ACTA TTGAAAACTATCCTG CLH_0206 220414 - 221352 + | putative thioredoxin reductase CLH_0207 221354 - 221581 + | hypothetical protein CLH_0208 222048 - 221821 - | hypothetical protein CLH_0209 222283 - 222116 - | hypothetical protein radA 222550 - 223917 + | DNA repair protein RadA CLH_0211 223935 - 224999 + | DNA integrity scanning protein DisA TERM 311 225042 - 225002 - T 73 -5.7 -4.82548 | gap 1, opp_overlap 225002, overlap 225009 TAAAAAGATATAAAA TAGAAAATCGGTATTACC AATATA GGTAAC-CCGATTTTTTA TTATCTAAAAGCAAA CLH_0212 225441 - 225043 - | hypothetical protein TERM 312 225253 - 225265 + g 72 -4.9 -4.86731 | GTCAACAGATTCATC TTCAT TTA ATGAA TTTTGTTTAGAAGCA CLH_0213 225704 - 226798 + | pin/tram domain protein TERM 313 226894 - 226910 + G 72 -6.6 -4.1673 | GCAATATCTTAACTT GAATGG TAAGC CCATTC TTTATTACACCATTA TERM 314 227203 - 227188 - g 79 -9 -3.49568 | GTATGCAGAAGAATA TGGTGC AGCA GCACCA GGAGTTATGCCTAAA ispD 226817 - 227491 + | 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase TERM 315 227727 - 227751 + F 100 -8.6 -6.04419 | opp_overlap 227727 GTACCGCGATTATAA GTTCGCCCTA AGATA TAGGGTGGAC TTTTTTTATTATTTT proS 227814 - 229526 + | prolyl-tRNA synthetase TERM 316 229669 - 229645 - g 70 -8.7 -2.75727 | opp_overlap 229644 229644, overlap 229644 CCAACAGTATATAAT TTCTTCCATAT AGG AAATGGAAGAA CATTTATAGTATTTG TERM 317 230071 - 230051 - g 82 -9.1 -3.76048 | overlap 230052 GTGCAAGTAATAGAA CTTCATCTG TTG CAGATGAAA GAAAGAAAGATCCTA TERM 318 230070 - 230052 - g 83 -10.4 -2.85147 | overlap 230051 TGCAAGTAATAGAAC TTCATCTG TTG CAGATGAA AGAAAGAAAGATCCT cysS 229546 - 230958 + | cysteinyl-tRNA synthetase TERM 319 230992 - 230959 - f 95 -10.5 -3.92523 | gap 1, opp_overlap 230966, overlap 230966 AAAAAAATAAATTAA TTAGAT-AGGGCTGCA AAT TGCAGCCCTTATTTAA AGGATGGGATAAATT TERM 320 230966 - 230984 + F 100 -14.6 -3.91716 | opp_overlap 230959 230966 TAAATTAATTAGATA GGGCTGCA AAT TGCAGCCC TTATTTAAAGGATGG TERM 321 230984 - 230966 - f 100 -14.6 -3.04625 | opp_overlap 230966, overlap 230959 TAAATTAATTAGATA GGGCTGCA AAT TGCAGCCC TTATTTAAAGGATGG CLH_0217 231008 - 231433 + | ribonuclease III TERM 322 232233 - 232223 - g 70 -5.4 -4.53774 | overlap 232225 ATAAATTAATCAAAA TACC TAT GGTA GGCAAGATTAATTCT CLH_0218 231439 - 232311 + | RNA methyltransferase, TrmH family, group 3 CLH_0219 232334 - 232846 + | tetracycline resistance protein sigH 232933 - 233553 + | RNA polymerase sigma-H factor TERM 323 234473 - 234447 - g 71 -8.1 -3.26471 | TCACTGGTAGAGGAA CAGTTGCAACT GGTAG AGTTGAAACTG GAATACTTCACGTAG tuf 233765 - 234958 + | translation elongation factor Tu TERM 324 234937 - 234968 + F 71 -8.4 -3.06492 | gap 1, opp_overlap 234946, overlap 234946 TGTAGGATCTGGAGT TGTTACTAAGATTAA CGC TTAATCTTA-TAACA TATTAAAATGAATAA TERM 325 234987 - 235009 + F 89 -9.9 -3.53761 | opp_overlap 234986 234987 235006 TAAAATGAATAAAGC GGACTGGGT GTTAA ACCTAGTCC TTTCAAAGGAAGTTG rpmG 235121 - 235270 + | ribosomal protein L33 secE 235320 - 235550 + | preprotein translocase, SecE subunit nusG 235588 - 236109 + | transcription termination/antitermination factor NusG rplK 236187 - 236612 + | ribosomal protein L11 rplA 236667 - 237356 + | ribosomal protein L1 TERM 326 237492 - 237516 + F 83 -6.5 -5.16237 | opp_overlap 237492, overlap 237466 AGTAAGTTTATTATA GATCTTCTC TGTCTAT GGGAAGATC TTTTTTAATAGAATT TERM 327 237750 - 237737 - g 71 -3.9 -5.06585 | overlap 237722 CAAAGTATATAAAAA TACTT TAGT AAGTA TAGCAGCTAAAGAAT rplJ 237567 - 238070 + | ribosomal protein L10 rplL 238128 - 238490 + | ribosomal protein L7/L12 TERM 328 238504 - 238540 + F 72 -8.2 -3.17598 | opp_overlap 238496 238507 238514, overlap 238505 238514 AATTTAATTTCTTAT ATATAAAAAAGGTGCT TATAT AGCACCTTTTTTAAAC TCATTTTATAAAGCT TERM 329 238505 - 238539 + F 85 -11.7 -2.50077 | opp_overlap 238496 238507 238514, overlap 238504 238514 ATTTAATTTCTTATA TATAAAAAAGGTGCT TATAT AGCACCTTTTTTAAA CTCATTTTATAAAGC TERM 330 238537 - 238507 - f 100 -14.3 -2.88579 | opp_overlap 238505 238504 238514, overlap 238496 238514 TTAATTTCTTATATA TAAAAAAGGTGCT TATAT AGCACCTTTTTTA AACTCATTTTATAAA TERM 331 238514 - 238530 + F 90 -8 -5.07053 | opp_overlap 238507 238514, overlap 238505 238504 CTTATATATAAAAAA GGTGCT TATAT AGCACC TTTTTTAAACTCATT TERM 332 238530 - 238514 - f 100 -8 -5.4251 | opp_overlap 238514 238505 238504, overlap 238507 CTTATATATAAAAAA GGTGCT TATAT AGCACC TTTTTTAAACTCATT TERM 333 238545 - 238603 + F 74 -8.7 -3.0976 | opp_overlap 238544 238541 238553, overlap 238542 238553 CTTTTTTAAACTCAT TTTATAAAGCTATATAAAATGTTCATT TATAT AGTAAATATTTTATATAGCTTTATAGC TATTAGAGTGTTAAA TERM 334 238553 - 238595 + F 78 -8.1 -3.9777 | opp_overlap 238544 238541 238553, overlap 238542 238545 AACTCATTTTATAAA GCTATATAAAATGTTCATT TATAT AGTAAATATTTTATATAGC TTTATAGCTATTAGA TERM 335 238794 - 238816 + F 70 -3.4 -5.43514 | opp_overlap 238794 238800 GACGCTATCCGAAAG CATAAGTCCT TAG AGGAAGTATG TTTTTTGGTTATTTT TERM 336 238953 - 238933 - g 71 -7 -3.75418 | opp_overlap 238933 TACAGAAATGCCAAA TCTAATTG AAGTA CAATTAGA TTCATATCAGTGGTT TERM 337 240183 - 240169 - g 78 -7.2 -4.4767 | opp_overlap 240169 TGAGTTATTACAAAA CCAATT TAG AATTGG TTTATCTAGAATGGA TERM 338 240169 - 240183 + G 72 -7.2 -4.05033 | opp_overlap 240169 TGAGTTATTACAAAA CCAATT TAG AATTGG TTTATCTAGAATGGA TERM 339 240820 - 240808 - g 70 -6.3 -4.07687 | ACCTTTCCTTGAAAA TGATG ATG CATCA AGAGCTCTTATGGGA rpoB 238856 - 242581 + | DNA-directed RNA polymerase, beta subunit TERM 340 243478 - 243465 - g 73 -5.3 -4.76088 | GAAATGAAAAAAGAA TGCTT CAAG AAGCA GTAGATGCTCTTATT TERM 341 243607 - 243595 - g 74 -6.3 -4.56358 | TAGATTTAGACAAAA CTTAC TTG GTAAG AGAGTTGACTATTCT TERM 342 244389 - 244367 - g 86 -10 -3.57808 | opp_overlap 244369, overlap 244361 244365 244369 TTTAATTTAGAAATA GATTTCCTAG TGA CTAAGAAATC ATTAGGAAAAGTAAT rpoC 242603 - 246136 + | DNA-directed RNA polymerase, beta' subunit TERM 343 246210 - 246174 - f 93 -9.7 -4.68539 | gap 1, opp_overlap 246174 246177 246178, overlap 246178 ATTAAAATGATAAAA TACAGTTTGTGTGGCT GTTAAA AGCCACACAAAC-ATA TTTATTAATAGCACA TERM 344 246174 - 246210 + F 78 -7.5 -4.24342 | gap 1, opp_overlap 246174 246178, overlap 246177 246178 ATTAAAATGATAAAA TACAGTTTGTGTGGCT GTTAAA AGCCACACAAACA-TA TTTATTAATAGCACA TERM 345 246177 - 246208 + F 95 -11.7 -3.72374 | opp_overlap 246174 246178, overlap 246174 246178 AAAATGATAAAATAC AGTTTGTGTGGCT GTTAAA AGCCACACAAACA TATTTATTAATAGCA TERM 346 246207 - 246178 - f 100 -15.2 -3.52813 | opp_overlap 246177 246174 246178, overlap 246174 AAATGATAAAATACA GTTTGTGTGGCT GTTAAA AGCCACACAAAC ATATTTATTAATAGC TERM 347 246178 - 246207 + F 100 -15.2 -2.82942 | opp_overlap 246178 246174, overlap 246177 246174 AAATGATAAAATACA GTTTGTGTGGCT GTTAAA AGCCACACAAAC ATATTTATTAATAGC TERM 348 246376 - 246340 - f 77 -9.1 -3.2981 | opp_overlap 246329 246345 246348, overlap 246329 246341 246345 246348 TATATTAATTATTAA GTAAATAATTAACTTTT AAT AAAAGCTAATTATTTAT ATGACGTAGTGTTTA TERM 349 246375 - 246341 - f 89 -12.6 -2.57404 | opp_overlap 246329 246345 246348, overlap 246329 246340 246345 246348 ATATTAATTATTAAG TAAATAATTAACTTTT AAT AAAAGCTAATTATTTA TATGACGTAGTGTTT TERM 350 246345 - 246371 + F 71 -6.8 -4.053 | opp_overlap 246329 246341 246340 246345 246348, overlap 246329 246348 TAATTATTAAGTAAA TAATTAACTTTT AAT AAAAGCTAATTA TTTATATGACGTAGT TERM 351 246371 - 246345 - f 81 -9 -3.98113 | opp_overlap 246329 246345 246348, overlap 246329 246341 246340 246348 TAATTATTAAGTAAA TAATTAACTTTT AAT AAAAGCTAATTA TTTATATGACGTAGT TERM 352 246680 - 246651 - g 74 -8.8 -3.32844 | opp_overlap 246658, overlap 246658 TGGTGTAGGCCATAA CTTACAAGAACA TAGTGT TGTTCTTATAAG AGGTGGTAGAGTTAA rpsL 246433 - 246810 + | ribosomal protein S12 rpsG 246956 - 247426 + | ribosomal protein S7 TERM 353 247439 - 247462 + F 100 -11.8 -4.45577 | opp_overlap 247439 TAATATATATATAAA CTGTTTTGGC TTAC GCCAAGACAG TTTTGTCAAATTTAT TERM 354 247462 - 247439 - f 89 -9.6 -4.2109 | opp_overlap 247439 TAATATATATATAAA CTGTTTTGGC TTAC GCCAAGACAG TTTTGTCAAATTTAT TERM 355 248253 - 248243 - g 73 -5.4 -4.63218 | opp_overlap 248232 GCTGGCTTAAGAAAA GCTA CTA TAGC TAATGAAATTTATCC fusA 247505 - 249571 + | translation elongation factor G TERM 356 250372 - 250346 - g 71 -8.1 -3.26471 | TCACTGGTAGAGGAA CAGTTGCAACT GGTAG AGTTGAAACTG GAATACTTCACGTAG tuf 249664 - 250857 + | translation elongation factor Tu TERM 357 250898 - 250929 + F 100 -16.2 -5.19879 | opp_overlap 250894 250891 250901 AATTAGAATAATGAG TAAGGTAGAGAAAA GACG TTTTCTCTACCTTA TTTTTATATTTAAAG TERM 358 250926 - 250901 - f 100 -13.5 -3.34242 | opp_overlap 250898, overlap 250894 250891 TAGAATAATGAGTAA GGTAGAGAAAA GACG TTTTCTCTACC TTATTTTTATATTTA rpsJ 251339 - 251647 + | ribosomal protein S10 rplC 251720 - 252349 + | ribosomal protein L3 rplD 252375 - 252995 + | ribosomal protein L4 rplW 252995 - 253291 + | ribosomal protein L23 rplB 253351 - 254184 + | ribosomal protein L2 TERM 359 254285 - 254273 - g 87 -4.8 -5.85737 | AGATCAACAAAAAAA GCAC CTTTT GTGC ATGAAGGACTTTTAA rpsS 254252 - 254530 + | ribosomal protein S19 rplV 254551 - 254886 + | ribosomal protein L22 rpsC 254905 - 255570 + | ribosomal protein S3 rplP 255588 - 256022 + | ribosomal protein L16 rpmC 256022 - 256234 + | ribosomal protein L29 rpsQ 256258 - 256512 + | ribosomal protein S17 rplN 256541 - 256909 + | ribosomal protein L14 rplX 256925 - 257239 + | ribosomal protein L24 rplE 257263 - 257802 + | ribosomal protein L5 rpsN 257819 - 258004 + | ribosomal protein S14 rpsH 258035 - 258433 + | ribosomal protein S8 TERM 360 258590 - 258552 - g 71 -8.3 -3.28712 | TTCCTGCTGGCATAA CTGTAACTGTAACACCA GACAA CGTTGTTACAGTTAAAG GTCCAAAAGGTGAAT TERM 361 258696 - 258686 - g 79 -6.8 -4.77157 | opp_overlap 258684 258686 CCAAGTGATCAAAAA GCTC ATA GAGC TCTTCATGGTTTAAC CLH_0252 258506 - 259048 + | 50S ribosomal protein L6 rplR 259067 - 259426 + | ribosomal protein L18 rpsE 259446 - 259943 + | ribosomal protein S5 TERM 362 260030 - 260006 - g 74 -2.2 -5.65177 | gap 1 ATAGGTAGAAAAAAA GAACATATCGC TACT GCAA-ATGCTC TTGGACTTAGAAAGA rpmD 259955 - 260134 + | ribosomal protein L30 rplO 260158 - 260598 + | ribosomal protein L15 CLH_0257 260600 - 261880 + | preprotein translocase, SecY subunit adk 261905 - 262552 + | adenylate kinase TERM 363 263151 - 263165 + G 74 -8.6 -3.25942 | ATGGAATGGTATTAG CCATAG AAC CTATGG TTAATATGGGAAACT map 262556 - 263305 + | methionine aminopeptidase, type I CLH_0260 263394 - 263675 + | hypothetical protein infA 263683 - 263901 + | translation initiation factor IF-1 rpmJ 263955 - 264068 + | ribosomal protein L36 rpsM 264274 - 264642 + | ribosomal protein S13p/S18e rpsK 264662 - 265054 + | ribosomal protein S11 rpsD 265082 - 265702 + | ribosomal protein S4 rpoA 265814 - 266761 + | DNA-directed RNA polymerase, alpha subunit rplQ 266774 - 267115 + | ribosomal protein L17 TERM 364 267122 - 267149 + F 86 -9.2 -4.16943 | opp_overlap 267123, overlap 267123 TTAGTATAACTAATA AGGGGATTAAGT TTAA ACTTAGTCCCCA TTTTAACATATAAAA TERM 365 267148 - 267123 - f 95 -10.5 -3.86981 | opp_overlap 267122 267123 TAGTATAACTAATAA GGGGATTAAGT TTAA ACTTAGTCCCC ATTTTAACATATAAA TERM 366 267123 - 267148 + F 93 -12.7 -3.09844 | opp_overlap 267123, overlap 267122 TAGTATAACTAATAA GGGGATTAAGT TTAA ACTTAGTCCCC ATTTTAACATATAAA CLH_0268 267368 - 268219 + | cobalt import ATP-binding protein CbiO 3 CLH_0269 268204 - 269061 + | cobalt import ATP-binding protein CbiO 2 CLH_0270 269153 - 269956 + | cobalt ABC transporter, permease protein truA 269973 - 270707 + | tRNA pseudouridine synthase A TERM 367 270721 - 270696 - f 70 -4.9 -4.84359 | TTAGTTTTAGAAAAA GTTTTTTATTA AATA TCATAAAAAAC ATTGACACGCCCGTA TERM 368 271012 - 270990 - g 82 -6.4 -5.10526 | opp_overlap 270994, overlap 270991 AGAGGAAAAAATAAA CCAACATTTA CAC CAAATGTTGA TTGCGGAGATTTCGT TERM 369 271011 - 270991 - g 71 -7.7 -3.63875 | opp_overlap 270994, overlap 270990 GAGGAAAAAATAAAC CAACATTTA CAC CAAATGTTG ATTGCGGAGATTTCG rplM 270867 - 271301 + | ribosomal protein L13 rpsI 271329 - 271721 + | ribosomal protein S9 TERM 370 271742 - 271764 + F 100 -7 -6.10295 | TATATCTTGCAAAAA GGGGGAGGAA TTA TTTCTCTTCC TTTTTTTTATCTTCA TERM 371 273531 - 273518 - g 71 -3.9 -5.17353 | ATACTTATCAAAAAA CTTAT AGAG ATAAG CATATAAAAAGACTT CLH_0274 272053 - 273666 + | Na/Pi-cotransporter family protein/PhoU family protein TERM 372 273673 - 273657 - f 71 -5.3 -4.6821 | opp_overlap 273671, overlap 273664 273667 273671 AAGTGTAATAGAAAA TTATAAA TAA TTTATAA CACATCAAATAATAA TERM 373 273712 - 273671 - f 100 -14.9 -2.74201 | opp_overlap 273671, overlap 273657 273667 273664 273674 ATTATAAATAATTTA TAACACATCAAATAATAAT TTTA AATATTATTTGATGTGTTA TTTCTATTTTATAAG TERM 374 273671 - 273712 + F 100 -14.9 -4.51238 | opp_overlap 273657 273671 273667 273664 273674 ATTATAAATAATTTA TAACACATCAAATAATAAT TTTA AATATTATTTGATGTGTTA TTTCTATTTTATAAG TERM 375 273709 - 273674 - f 95 -12.2 -3.50541 | opp_overlap 273671, overlap 273671 273667 273664 ATAAATAATTTATAA CACATCAAATAATAAT TTTA AATATTATTTGATGTG TTATTTCTATTTTAT cwlD 274089 - 274751 + | N-acetylmuramoyl-L-alanine amidase CwlD TERM 376 274801 - 274749 - T 81 -7.5 -4.38843 | gap 1, opp_overlap 274758 274800, overlap 274758 GAAAACACTAATAAA TAAGT-TAAATATCCCAAAATGAT TATTTT ATCATTTTGGGATATTTTGATTTA AATCTGAATTTATTT TERM 377 274791 - 274758 - T 100 -14.2 -3.91946 | opp_overlap 274758, overlap 274749 AATAAATAAGTTAAA TATCCCAAAATGAT TATTTT ATCATTTTGGGATA TTTTGATTTAAATCT TERM 378 274758 - 274791 + T 100 -14.2 -4.57516 | opp_overlap 274758 274749 AATAAATAAGTTAAA TATCCCAAAATGAT TATTTT ATCATTTTGGGATA TTTTGATTTAAATCT CLH_0276 275734 - 274967 - | hypothetical protein CLH_0277 275869 - 276711 + | fumarate hydratase fumB 277084 - 277641 + | fumarate hydratase, class I CLH_0279 277654 - 277782 + | hypothetical protein TERM 379 278067 - 278013 - T 100 -25.1 -5.1166 | opp_overlap 278022 278032, overlap 278056 TATCAAAAGCAAAAA TGACTACAATGATATATAATATAAA AAATA TTTATATTATATATCATTGTAGTCA ATAAGCTTGCGATAT TERM 380 278022 - 278058 + T 95 -12.8 -3.4252 | opp_overlap 278013 278056, overlap 278032 CAAAAATGACTACAA TGATATATAATATAAA AAATA TTTATATTATATATCA TTGTAGTCAATAAGC CLH_0280 278953 - 278096 - | transporter CLH_0281 279215 - 279925 + | TPR-repeat-containing protein CLH_0282 280003 - 280695 + | regulatory protein VanR TERM 381 282442 - 282426 - gf 74 -5.9 -4.56133 | TTGCAATAACGAAAA GTATAGT TGA ACTACAC GATGGTAAAACTAAA CLH_0283 280667 - 282523 + | two-component sensor kinase TERM 382 282545 - 282578 + F 73 -2.5 -5.64274 | AATTTTATTGATTAA GTGGTTAATTCATAG TAAA TTAGAGATTAACCAC TTTTTTTATAAATAA TERM 383 282670 - 282654 - f 88 -8.1 -4.7889 | opp_overlap 282653 ATAAACATTGAAAAA CGATATA TTG TATATCG GATTTGATTAATAAA CLH_0284 282725 - 284950 + | ribonucleoside-diphosphate reductase, alpha subunit TERM 384 285523 - 285511 - g 73 -7.7 -3.71527 | opp_overlap 285509 285511 GTTTAACTATTCAAA GCTTC CAA GAAGC TGTTCATTCTCAGAG TERM 385 286125 - 286138 + G 73 -3.1 -5.42259 | GTTGCTAATTCTAAT TCGGT TAAA ACTGA TTTTTTTGAAGCTAA CLH_0285 285165 - 286199 + | ribonucleoside-diphosphate reductase, beta subunit TERM 386 287173 - 287148 - g 80 -4.1 -5.71638 | GAAGAATTAAAAAAA TTAATAGATGT AAAG ACAACTACTAA ATCTGGTAGAAGAAT ptsP 286389 - 288008 + | phosphoenolpyruvate-protein phosphotransferase TERM 387 288035 - 288053 + F 100 -9.6 -5.8901 | opp_overlap 288035 TTTATATATTTAAAA GGTGGAGT TTT ACTTCACC TTTTTTATTTTATGT TERM 388 288053 - 288035 - f 75 -7.4 -4.26188 | opp_overlap 288035 TTTATATATTTAAAA GGTGGAGT TTT ACTTCACC TTTTTTATTTTATGT TERM 389 288189 - 288201 + F 72 -4.9 -4.99134 | opp_overlap 288189 AAAGTAAACAAGTTA TTTTC ATA GAAAA TTTTTGCTTTGGAAT TERM 390 288361 - 288312 - f 70 -4 -5.11937 | opp_overlap 288314 288315, overlap 288314 AAGAAGCGTAAAAAA TACTATATTATTAATTTAAAAA TATATT TTTTAAAATTAATAATACAGCT TGTTTAGTGATAAAA TERM 391 288359 - 288314 - f 82 -8.8 -4.17355 | opp_overlap 288314 288315, overlap 288312 GAAGCGTAAAAAATA CTATATTATTAATTTAAAAA TATATT TTTTAAAATTAATAATACAG CTTGTTTAGTGATAA TERM 392 288315 - 288337 + F 70 -3.6 -5.10029 | opp_overlap 288314 288312, overlap 288314 AAGCGTAAAAAATAC TATATTATTA ATT TAAAAATATA TTTTTTAAAATTAAT chrA 288413 - 288946 + | chromate transport protein CLH_0288 288950 - 289474 + | putative chromate transport protein CLH_0289 289637 - 290908 + | TPR-repeat-containing protein iadA 290952 - 292124 + | beta-aspartyl peptidase TERM 393 292182 - 292220 + T 100 -14.2 -5.11112 | opp_overlap 292182 AAGCAAATTTAAAAA TAATGACCAGTCTAATAA ATA TAATTAGATTGGTCATTA TTTTTATTAAGATTT TERM 394 292220 - 292182 - T 100 -12 -4.83759 | opp_overlap 292182 AAGCAAATTTAAAAA TAATGACCAGTCTAATAA ATA TAATTAGATTGGTCATTA TTTTTATTAAGATTT CLH_0291 292856 - 292227 - | spore-cortex-lytic enzyme, sleb CLH_0292 293912 - 292926 - | hypothetical protein TERM 395 293614 - 293633 + g 78 -4.4 -5.47399 | overlap 293616 TTTGAAAGATTGTTT TTTAATTC ATTA GAATTAGA TTTTTTTAAAGTTAA CLH_0293 294096 - 294956 + | hypothetical protein CLH_0294 294926 - 296149 + | hypothetical protein TERM 396 296194 - 296143 - f 70 -4.4 -5.04385 | gap 3, opp_overlap 296156 296187, overlap 296147 296151 296156 GATAGTTTTAAAAAA TAA-ATAATGAAAATAGCCACAATT TATTT AATTGTGGCTATTTT--TTATGTTA TAATCGGTTAAACTT TERM 397 296189 - 296147 - f 80 -6.8 -5.04249 | gap 2, opp_overlap 296156 296187, overlap 296143 296151 296156 GTTTTAAAAAATAAA TAATGAAAATAGCCACAATT TATTT AATTGTGGCTATTTT--TTA TGTTATAATCGGTTA TERM 398 296187 - 296151 - f 95 -12.6 -3.33489 | opp_overlap 296156, overlap 296147 296143 296156 TAAAAAATAAATAAT GAAAATAGCCACAATT TATTT AATTGTGGCTATTTTT TATGTTATAATCGGT TERM 399 296182 - 296156 - f 100 -12.5 -4.65969 | opp_overlap 296156, overlap 296151 296147 296143 AATAAATAATGAAAA TAGCCACAATT TATTT AATTGTGGCTA TTTTTTATGTTATAA TERM 400 296156 - 296182 + F 100 -12.5 -5.5208 | opp_overlap 296156 296151 296147 296143 AATAAATAATGAAAA TAGCCACAATT TATTT AATTGTGGCTA TTTTTTATGTTATAA TERM 401 297042 - 297028 - g 74 -8.6 -3.15544 | CTTTAGTGCTAGCAA TTGGAC ATA GTCCAA GAGATACATATGAAA CLH_0295 296253 - 297848 + | oxidoreductase, FAD-binding ptb 298022 - 298930 + | phosphate butyryltransferase buk 298954 - 300021 + | butyrate kinase TERM 402 300077 - 300024 - f 100 -18.7 -3.44206 | opp_overlap 300028 300034, overlap 300028 300034 TAAGATTTACTAGAA TATATGAAAAGAGGTCATATCAAAA GAAA TTTTGATATGACCTCTTTTAATGTA TAAGAAAATATAAAA TERM 403 300028 - 300073 + F 100 -19.5 -2.87683 | opp_overlap 300024 300028 300034, overlap 300034 ATTTACTAGAATATA TGAAAAGAGGTCATATCAAAA GAAA TTTTGATATGACCTCTTTTAA TGTATAAGAAAATAT TERM 404 300073 - 300028 - f 100 -19.5 -3.2059 | opp_overlap 300028 300034, overlap 300024 300034 ATTTACTAGAATATA TGAAAAGAGGTCATATCAAAA GAAA TTTTGATATGACCTCTTTTAA TGTATAAGAAAATAT TERM 405 300034 - 300067 + F 100 -18.5 -4.39166 | opp_overlap 300034 300028 300024, overlap 300028 TAGAATATATGAAAA GAGGTCATATCAAAA GAAA TTTTGATATGACCTC TTTTAATGTATAAGA TERM 406 300067 - 300034 - f 100 -18.5 -4.44819 | opp_overlap 300028 300034, overlap 300028 300024 TAGAATATATGAAAA GAGGTCATATCAAAA GAAA TTTTGATATGACCTC TTTTAATGTATAAGA CLH_0298 300407 - 301240 + | HTH DNA-binding protein CLH_0299 301323 - 301619 + | putative TrpR homolog YerC/YecD TERM 407 301631 - 301665 + F 100 -11 -4.56914 | opp_overlap 301630 301624, overlap 301633 GTAAATTATTAAATT TTTGCTATAAGTAGTT AAA AATTACTTATAGCATA TTTTAATTTAAATAC TERM 408 301633 - 301663 + F 100 -13.6 -3.88998 | opp_overlap 301630 301624, overlap 301631 AAATTATTAAATTTT TGCTATAAGTAGTT AAA AATTACTTATAGCA TATTTTAATTTAAAT TERM 409 303006 - 302981 - g 76 -4.2 -5.43514 | gap 1 AAAAGAAGGAAAAAA CATTATCAGAA TTATG TTCTG-TAATG AAAGAATTACCACAA glmM 301909 - 303252 + | phosphoglucosamine mutase TERM 410 303321 - 303353 + F 100 -13.7 -6.32017 | opp_overlap 303320 303321 303323 AAATCTATAAAGAAC CATCACAAGGTGATT AAA AATCATTTTGTGATG TTTTTTTTATTTCTT TERM 411 303353 - 303321 - f 78 -9.3 -3.06662 | opp_overlap 303321, overlap 303320 303323 AAATCTATAAAGAAC CATCACAAGGTGATT AAA AATCATTTTGTGATG TTTTTTTTATTTCTT CLH_0301 303608 - 304021 + | hypothetical protein TERM 412 304487 - 304518 + F 100 -11.8 -5.48213 | opp_overlap 304487 ATAAGCGGAATTTAA CCACTTTTTATGAT TTGT ATCATTAAAAGTGG TTTTTGTTTTAAATA TERM 413 304518 - 304487 - f 93 -11.8 -3.19513 | opp_overlap 304487 ATAAGCGGAATTTAA CCACTTTTTATGAT TTGT ATCATTAAAAGTGG TTTTTGTTTTAAATA ilvN 304556 - 305065 + | acetolactate synthase, small subunit TERM 414 305628 - 305640 + G 77 -7.7 -4.14243 | overlap 305618 TACTTGCACATATGG TGCTC TTG GAGCA TTTTCAACTGGAATA TERM 415 305925 - 305913 - g 71 -4.1 -5.03715 | AGCAGGTGGAAAAAA TGGAA TAT TCCCA GTAGATGATAAGACT leuC 305239 - 306498 + | 3-isopropylmalate dehydratase, large subunit leuD 306514 - 306999 + | 3-isopropylmalate dehydratase, small subunit leuB 307169 - 308251 + | 3-isopropylmalate dehydrogenase ilvD 308258 - 309916 + | dihydroxy-acid dehydratase TERM 416 310128 - 310115 - g 70 -8.1 -2.96249 | overlap 310112 TGTCATGAACAAGCA GCTGC ACAT GCAGC AGATGGATATGCCAG ilvB 309956 - 311629 + | acetolactate synthase, large subunit, biosynthetic type TERM 417 312163 - 312140 - g 76 -8.2 -3.86346 | opp_overlap 312146, overlap 312141 GTAGGGCTTTAGAAA CTGCACTTGC ATAT GCAAATGCAA TTGGTGGAGCGAGAG TERM 418 312162 - 312141 - g 77 -9.5 -2.91593 | opp_overlap 312146, overlap 312140 TAGGGCTTTAGAAAC TGCACTTGC ATAT GCAAATGCA ATTGGTGGAGCGAGA ilvC 311650 - 312666 + | ketol-acid reductoisomerase CLH_0309 312752 - 312871 + | hypothetical protein TERM 419 312939 - 312916 - T 100 -12.6 -5.11033 | opp_overlap 312916 GATAACTTTAAAAAA TGTGGATTCA TTAA TGAATCCACA TTTTTTGTATTTTAA TERM 420 312916 - 312939 + T 100 -12.6 -5.63645 | opp_overlap 312916 GATAACTTTAAAAAA TGTGGATTCA TTAA TGAATCCACA TTTTTTGTATTTTAA CLH_0310 314840 - 312951 - | ABC-type multidrug/protein/lipid transport system, ATPase TERM 421 314237 - 314251 + g 75 -8.6 -3.42503 | opp_overlap 314236 AAGTCATTATAGGAC TGATGC TAA GCATCA TTATAAGTATTCCAA CLH_0311 316566 - 314833 - | ABC transporter, ATP-binding protein CLH_0312 317063 - 316620 - | MarR-family transcriptional regulator CLH_0313 317452 - 317709 + | GIY-YIG domain protein TERM 422 318330 - 318308 - g 74 -6.4 -4.61687 | overlap 318309 GGAAAGAAAAAAATA GCTTTTTTAG GAG CTAAAAAAGA ATGGAATTTAACTAA TERM 423 318329 - 318309 - g 85 -9.9 -3.34572 | overlap 318308 GAAAGAAAAAAATAG CTTTTTTAG GAG CTAAAAAAG AATGGAATTTAACTA CLH_0314 317753 - 318751 + | transcriptional regulator, LacI family CLH_0315 319065 - 320729 + | glycosyl hydrolase, family 13 TERM 424 320849 - 320836 - g 71 -3.9 -5.16572 | opp_overlap 320836 ATGGAAGCGAAAAAA GAAAA ATTA TTTTC ATTTGAATTTTGGCA CLH_0316 320821 - 322479 + | pts system, iibc component TERM 425 322977 - 322952 - g 100 -7.8 -5.65513 | TATCAAGTAAAAAAA TTATTAGAAG AAAACA CTTCTAATAA TACAACATTTTTTAT TERM 426 323163 - 323147 - g 74 -2.3 -5.59962 | opp_overlap 323148, overlap 323148 GAAAATAAAGAAAAA CTAAGAT TAG ATCTTAT ATTAAGTAATAAGAA TERM 427 323199 - 323180 - g 82 -8 -4.51994 | TTAAGTAATAAGAAA TTAGATGT TTTA ACATCTAA AGTAATATTTAATGG CLH_0317 322484 - 323272 + | endonuclease/exonuclease/phosphatase family protein TERM 428 323333 - 323275 - T 100 -13.9 -3.00797 | gap 1, opp_overlap 323292, overlap 323292 CCTAAACTTATAAAT TAAAATAAATAAAAAAATAAGACGAATA ATTT TATTCGTCTTATTTTTTT-TCTATTTTT TGCATTATATCATAT TERM 429 323317 - 323292 - T 100 -12.1 -6.11392 | opp_overlap 323292, overlap 323275 AAATAAATAAAAAAA TAAGACGAATA ATTT TATTCGTCTTA TTTTTTTTCTATTTT TERM 430 323292 - 323317 + T 100 -12.1 -6.18768 | opp_overlap 323275 323292 AAATAAATAAAAAAA TAAGACGAATA ATTT TATTCGTCTTA TTTTTTTTCTATTTT CLH_0318 323806 - 323315 - | MarR-family transcriptional regulator CLH_0319 324106 - 325332 + | efflux transporter, RND family, MFP subunit CLH_0320 325337 - 328540 + | putative multidrug efflux pump, membrane protein CLH_0321 328567 - 329724 + | putative multidrug efflux pump, outer membrane protein TERM 431 329791 - 329734 - f 78 -9.5 -2.97588 | opp_overlap 329734 329735, overlap 329784 ATGTAATTTAAATTA TGCTATGCTTTAAATATGATTTGATAC TAAA ATATCAATTATTATTTAAAGCATAGCC TTTTTATGCTGTACC TERM 432 329734 - 329791 + F 100 -8.8 -4.95155 | opp_overlap 329734 329784, overlap 329735 ATGTAATTTAAATTA TGCTATGCTTTAAATATGATTTGATA CTAAAA TATCAATTATTATTTAAAGCATAGCC TTTTTATGCTGTACC TERM 433 329735 - 329790 + F 95 -12.3 -3.5637 | opp_overlap 329734 329784, overlap 329734 TGTAATTTAAATTAT GCTATGCTTTAAATATGATTTGATA CTAAAA TATCAATTATTATTTAAAGCATAGC CTTTTTATGCTGTAC CLH_0322 330235 - 331281 + | S-layer homology domain TERM 434 331348 - 331382 + F 100 -11 -4.84761 | opp_overlap 331348 AATATACTTTAATAA GCACTTGTATTTTG ATTTATG CAAAATATAAGTGC TTTTTGTGGAAATAT TERM 435 331382 - 331348 - f 79 -8.8 -3.6796 | opp_overlap 331348 AATATACTTTAATAA GCACTTGTATTTTG ATTTATG CAAAATATAAGTGC TTTTTGTGGAAATAT TERM 436 332636 - 332622 - g 76 -7.2 -4.32034 | GTAGGATTAGGAAAA GATGAA TCA TTCATC GCATCAGATATTCCT glmS 332070 - 333896 + | glutamine-fructose-6-phosphate transaminase (isomerizing) TERM 437 333948 - 333999 + F 91 -8.5 -5.00196 | gap 1, opp_overlap 333948 333949 333951, overlap 333951 AAATTTTTATCAAAA T-TATATGAGGCTAGTCATTTTAA TAAAT TTAAAATGACTAGTCTTATATTTA TTTTATTGTTTAGAA TERM 438 333997 - 333949 - f 80 -9.2 -3.15592 | opp_overlap 333948 333951, overlap 333948 333951 AATTTTTATCAAAAT TATATGAGGCTAGTCATTTTAA TAAAT TTAAAATGACTAGTCTTATATT TATTTTATTGTTTAG TERM 439 333995 - 333951 - f 93 -11.8 -3.13504 | opp_overlap 333948 333951, overlap 333949 333948 TTTTTATCAAAATTA TATGAGGCTAGTCATTTTAA TAAAT TTAAAATGACTAGTCTTATA TTTATTTTATTGTTT TERM 440 333951 - 333995 + F 100 -16.2 -4.98461 | opp_overlap 333951 333949 333948, overlap 333948 TTTTTATCAAAATTA TATGAGGCTAGTCATTTTAA TAAAT TTAAAATGACTAGTCTTATA TTTATTTTATTGTTT CLH_0324 334084 - 334758 + | cyclic nucleotide-binding domain protein CLH_0325 335012 - 336355 + | mate efflux family protein TERM 441 336374 - 336423 + F 100 -14.8 -5.38549 | opp_overlap 336383 TTTTTATTTTAAGTT TCTCTATAATATGTATTGATAT AAATAA ATATCAACACATATTATGGAGA TTTTTATTATTTGGA TERM 442 336414 - 336383 - f 72 -8.3 -3.29461 | opp_overlap 336374 TAAGTTTCTCTATAA TATGTATTGATAT AAATAA ATATCAACACATA TTATGGAGATTTTTA TERM 443 336642 - 336671 + F 86 -2.3 -6.48081 | AGTGATTGAGAGAAA GTATGAAATAATT TAAG GATTATTTTGTGC TTTTTTTTTTATACA TERM 444 336765 - 336788 + F 71 -7 -3.94634 | opp_overlap 336765 336767 336769 336787, overlap 336787 TTTAGTACGATAGTA TATATAATTA TATT TAATTATATA TTATTTAACATAATA CLH_0326 336836 - 338359 + | phosphoglucomutase/phosphomannomutase family protein TERM 445 338386 - 338418 + F 100 -12.3 -5.28983 | opp_overlap 338386 TAGATTAAATTTAAA GCTATATATCATAAT AAA ATCATGATATATAGC TTTTTATATTTTAAA TERM 446 338418 - 338386 - f 100 -14.5 -3.8822 | opp_overlap 338386 TAGATTAAATTTAAA GCTATATATCATAAT AAA ATCATGATATATAGC TTTTTATATTTTAAA CLH_0327 338679 - 340091 + | cell volume regulation protein A TERM 447 340153 - 340194 + F 100 -11.3 -4.81249 | gap 1, opp_overlap 340152 340151 340153, overlap 340158 AAGTAAATAGAAATG TTATAGGGTTATATTAAGGT TGA AACTTAATATAACCCT-TAA TTTTTAAATTTAAAG TERM 448 340194 - 340153 - f 82 -11.3 -2.52731 | gap 1, opp_overlap 340153 340158, overlap 340152 340151 AAGTAAATAGAAATG TTATAGGGTTATATTAAGGT TGA AACTTAATATAACCCT-TAA TTTTTAAATTTAAAG TERM 449 340158 - 340190 + F 100 -13.7 -3.85552 | opp_overlap 340153 340152 340151, overlap 340153 AATAGAAATGTTATA GGGTTATATTAAGGT TGA AACTTAATATAACCC TTAATTTTTAAATTT TERM 450 340438 - 340464 + F 82 -9.7 -3.32769 | opp_overlap 340438 340441 340461 340462, overlap 340441 TATGCATTGAAGAAA CAACTTAATTA GAATA TAATTAAGTTG TTAATAATTTAACAA TERM 451 340464 - 340438 - f 89 -9.7 -4.2123 | opp_overlap 340438 340441, overlap 340441 340461 340462 TATGCATTGAAGAAA CAACTTAATTA GAATA TAATTAAGTTG TTAATAATTTAACAA CLH_0328 340697 - 341458 + | formate/nitrite transporter family protein TERM 452 341498 - 341465 - f 93 -9.9 -3.89182 | gap 1, opp_overlap 341465 341490, overlap 341459 341490 GAAGAATAATTCAAA GTGTTTTAGC-TATTT TTT AAACAAGCTAAAACAC TTTTTTAGTACTCTA TERM 453 341465 - 341498 + F 95 -8.3 -5.20216 | opp_overlap 341465 341459 341490, overlap 341490 GAAGAATAATTCAAA GTGTTTTAGCTATTT TTTA AACAAGCTAAAACAC TTTTTTAGTACTCTA CLH_0329 341617 - 342021 + | hypothetical protein TERM 454 342081 - 342050 - T 83 -3.2 -6.02919 | opp_overlap 342068 GTAGAAATAAAAAAA TTAGAAATAACT TTATATTT AGATATTTCTAA TTAATATTGTAATAA CLH_0330 342659 - 342099 - | carbonate dehydratase TERM 455 342408 - 342427 + g 74 -8 -3.51825 | TTCAGCTCCAAATTC GTATATTG AAAC CAATATAC TTCTCATTACACTAC CLH_0331 342908 - 343489 + | 5-formyltetrahydrofolate cyclo-ligase TERM 456 343722 - 343753 + F 76 -3 -5.92337 | AATTTGTTTTATAAA CTATTTCTCTATCT TTAA AGTCAGGGAAATGG TTTTTTTTAATATCT CLH_0332 343819 - 345084 + | O-acetylhomoserine aminocarboxypropyltransferase/cysteine synthase family protein thrS 347243 - 345312 - | threonyl-tRNA synthetase TERM 457 347325 - 347297 - R 100 -11.1 -6.14618 | opp_overlap 347297 TACAAAATAAAAAAA CTCCGTCTCTAAA ATA TATAGAGACGAAG TAATATCCGTGGTTC TERM 458 347297 - 347325 + r 72 -8.9 -2.6574 | opp_overlap 347297 TACAAAATAAAAAAA CTCCGTCTCTAAA ATA TATAGAGACGAAG TAATATCCGTGGTTC CLH_0334 348051 - 347638 - | hypothetical protein TERM 459 348239 - 348208 - H 83 -3.8 -5.85178 | AATATTTAAAAAAAA TCTCAAGTGTTACA TTTT TGAAACAATTAAGA TTAAGTTTTGAAAAG CLH_0335 348307 - 348867 + | glycerol-3-phosphate responsive antiterminator CLH_0336 348979 - 350307 + | glycerol-3-phosphate transporter TERM 460 350423 - 350391 - f 100 -18.1 -4.91873 | opp_overlap 350391 TATATTAATGAAAAA GTATATTTTCAGACT TTT AGTCTGAAAATATAC TTTTTTTTGTTCTCT TERM 461 350391 - 350423 + F 100 -18.1 -6.19302 | opp_overlap 350391 TATATTAATGAAAAA GTATATTTTCAGACT TTT AGTCTGAAAATATAC TTTTTTTTGTTCTCT CLH_0337 350737 - 351333 + | hypothetical protein TERM 462 351405 - 351357 - T 73 -5.7 -4.87273 | gap 1, opp_overlap 351355 351357 351358, overlap 351344 351360 AATATTTTATAAAAA TAATAAGGGTTACTAGAAAT AAATAAGAAA ATTTCTAGTAACCCTTAA-A GTATTATTTTTTAAT TERM 463 351403 - 351360 - T 100 -14.3 -4.53475 | opp_overlap 351358 351357 351355, overlap 351357 ATTTTATAAAAATAA TAAGGGTTACTAGAAAT AAATAAGAAA ATTTCTAGTAACCCTTA AAGTATTATTTTTTA ispF 351882 - 351409 - | 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase CLH_0339 352176 - 352298 + | hypothetical protein CLH_0340 352336 - 353367 + | hypothetical protein TERM 464 353421 - 353365 - T 75 -9.1 -3.28261 | opp_overlap 353370 353375, overlap 353375 ACAAGTTCATATGAA TAAATAAAAAGATAGAGGCTAAAATTA TTT TAATTTAGACCTCTATCTTTTAGTTTA GGTATATTGAATAAA TERM 465 353370 - 353416 + T 73 -9 -2.85583 | opp_overlap 353365 353375, overlap 353375 TTCATATGAATAAAT AAAAAGATAGAGGCTAAAATTA TTT TAATTTAGACCTCTATCTTTTA GTTTAGGTATATTGA TERM 466 353375 - 353411 + T 89 -8.9 -4.57516 | opp_overlap 353365 353375, overlap 353370 ATGAATAAATAAAAA GATAGAGGCTAAAATTA TTT TAATTTAGACCTCTATC TTTTAGTTTAGGTAT TERM 467 353411 - 353375 - T 100 -8.9 -5.48514 | opp_overlap 353375 353370, overlap 353365 ATGAATAAATAAAAA GATAGAGGCTAAAATTA TTT TAATTTAGACCTCTATC TTTTAGTTTAGGTAT CLH_0341 354475 - 353552 - | polysaccharide deacetylase family protein TERM 468 354622 - 354599 - H 75 -9 -3.18033 | opp_overlap 354598, overlap 354597 TACAACTTATCAACA TTATCCACAA TTGC CTGTGGATAA CCTGTTATAAATTTA CLH_0342 354719 - 355438 + | hypothetical protein CLH_0343 355505 - 356353 + | transporter CLH_0344 357650 - 356604 - | radical SAM domain protein TERM 469 356823 - 356793 - G 70 -8.4 -2.58249 | opp_overlap 356800, overlap 356792 356797 TACATTTGGCATAAC TACATTAGCACCAC TTT GAAGTGCTAATATA CGACCGTTTTTATGC TERM 470 357710 - 357747 + r 80 -10.1 -2.92314 | opp_overlap 357710, overlap 357709 357707 357713 ATACTATATAAAAAA TAAGAGTTAAAGGACAA GAAC TTGCCATTTAACTCTTA ATATTTTACTTTAAG TERM 471 357747 - 357710 - R 100 -12.3 -5.40625 | opp_overlap 357710 357709 357707 357713 ATACTATATAAAAAA TAAGAGTTAAAGGACAA GAAC TTGCCATTTAACTCTTA ATATTTTACTTTAAG CLH_0345 360427 - 357758 - | cation-transporting ATPase, P-type TERM 472 358815 - 358831 + g 75 -9.5 -2.61467 | overlap 358814 GTAACTTTATGATCA CCAGTAA TCA TTACTGG CTTAATTGAGGCTTT TERM 473 360579 - 360536 - H 100 -23 -5.87996 | opp_overlap 360538 360547 TAATGAACAAAAAAA GACTTTTAATATGATTTCAG AATT CTGAAATCATATTAAAAGTC TCGTCACCACAAAGG TERM 474 360538 - 360577 + H 100 -19.8 -2.78384 | opp_overlap 360536, overlap 360547 ATGAACAAAAAAAGA CTTTTAATATGATTTCAG AATT CTGAAATCATATTAAAAG TCTCGTCACCACAAA TERM 475 360547 - 360568 + H 85 -10.3 -3.05521 | opp_overlap 360536, overlap 360538 AAAAGACTTTTAATA TGATTTCAG AATT CTGAAATCA TATTAAAAGTCTCGT CLH_0346 360803 - 361501 + | transcriptional regulator, FadR family TERM 476 361549 - 361591 + F 100 -17.6 -5.93809 | opp_overlap 361549 AATATCAATCAAAAA GTTTCTATAAAAATAAAAAG ATA TTTTTTATTTTTATAGAAAC TTTTTTTTGTGGAAA TERM 477 361591 - 361549 - f 100 -16.9 -4.92777 | opp_overlap 361549 AATATCAATCAAAAA GTTTCTATAAAAATAAAAA GATAT TTTTTATTTTTATAGAAAC TTTTTTTTGTGGAAA TERM 478 361767 - 361785 + F 72 -9 -2.7535 | opp_overlap 361754 361769 361780, overlap 361754 361753 361764 AATTGTAAGTGGTAA TACCAATT GCA AATTGGTA TGATATGTTACCAAA lctP 361901 - 362167 + | L-lactate permease CLH_0348 362333 - 363121 + | electron transfer flavoprotein, beta subunit/FixA family protein CLH_0349 363224 - 364414 + | electron transfer flavoprotein, alpha subunit/FixB family protein CLH_0350 364419 - 365822 + | FAD/FMN-containing dehydrogenase TERM 479 365855 - 365885 + F 100 -14.2 -5.55769 | opp_overlap 365858, overlap 365858 ATAAATTTTTTTTAT AAAGGGTGTATCAA ATT TTGATACACCCTTG TTTTTTGTTGTGAAG TERM 480 365882 - 365858 - f 100 -15.9 -3.86194 | opp_overlap 365855 365858 AATTTTTTTTATAAA GGGTGTATCAA ATT TTGATACACCC TTGTTTTTTGTTGTG TERM 481 365858 - 365882 + F 100 -15.9 -4.84921 | opp_overlap 365858, overlap 365855 AATTTTTTTTATAAA GGGTGTATCAA ATT TTGATACACCC TTGTTTTTTGTTGTG TERM 482 366116 - 366081 - f 78 -4.3 -5.4756 | opp_overlap 366074 366063 366081, overlap 366063 366085 AATTTTAATAAAAAA TTTATCTTAAATTAA ATGTTA TTAATTCAAGATGAA GTTCAGTTAAGTATA TERM 483 366666 - 366644 - f 74 -8.5 -3.42884 | opp_overlap 366643 366650, overlap 366642 ATAGCGAATACAACA CCAACAGCT TTTGG AGCTATTGG AATTCCTGTAACTAC lctP 367280 - 367723 + | L-lactate permease TERM 484 367763 - 367790 + F 83 -9.4 -3.50832 | opp_overlap 367763, overlap 367761 TTGAACTAAAGATAA GTGTAAGTTATA AATT TATAATTTACAC TCTTTAAATTTAAAA TERM 485 367790 - 367763 - f 71 -7.2 -3.90298 | opp_overlap 367763 367761 TTGAACTAAAGATAA GTGTAAGTTATA AATT TATAATTTACAC TCTTTAAATTTAAAA CLH_0354 367960 - 368802 + | phospholipase, patatin family TERM 486 369043 - 369032 - g 71 -4.4 -4.8743 | TTGAAAATAAAGAAA CTGA TGAA TCAG CAGAATTATATGATA TERM 487 369590 - 369580 - g 70 -5.4 -4.57581 | opp_overlap 369580, overlap 369573 ATTGTAAATAATAAA GATG TTA CATC ATTATTACAAAGGTA TERM 488 369898 - 369886 - g 83 -4.9 -5.71712 | opp_overlap 369897 TTTGAGATAAAAAAA GATAT GGT ATATC AAATAATGGACGATT CLH_0355 368971 - 370185 + | SEC-C motif domain protein TERM 489 370251 - 370285 + F 72 -8.1 -3.28524 | overlap 370256 TTAATATTGGGTGTT TAAAGGAACTACTTA TTTAC TGGGTAGTTCTTTTA TGTATTTAAATGGTT TERM 490 370256 - 370280 + F 73 -5.8 -4.74013 | overlap 370251 ATTGGGTGTTTAAAG GAACTACTTA TTTAC TGGGTAGTTC TTTTATGTATTTAAA CLH_0356 370400 - 371467 + | putative mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase TERM 491 371631 - 371618 - f 76 -2.4 -5.86465 | opp_overlap 371618 AATAACAGAAAAAAA TGCT AATAAA AGCA TTGTAAAATATATTA CLH_0357 371741 - 372322 + | hypothetical protein TERM 492 372335 - 372356 + F 100 -8.9 -5.4833 | opp_overlap 372339, overlap 372332 TAATTAGATTTTTAA GAAACTTAT TTTT ATAAGTTTC TTTTTTGTTGCATAA CLH_0358 372447 - 372812 + | cadmium efflux system accessory protein cadA 372830 - 375091 + | cadmium-translocating P-type ATPase CLH_0360 375524 - 376156 + | redox-sensing transcriptional repressor rex crt 376505 - 377287 + | 3-hydroxybutyryl-CoA dehydratase CLH_0362 377368 - 378507 + | acyl-coa dehydrogenase, short-chain specific CLH_0363 378525 - 379307 + | electron transfer flavoprotein, beta subunit/FixA family protein etfA 379330 - 380337 + | electron transfer flavoprotein, alpha subunit TERM 493 380374 - 380411 + F 100 -14.5 -3.88583 | opp_overlap 380376, overlap 380376 TTATTATATATTTCA AATCCTTCATTAAAAGA TATT TCTTTTAATGAAGGATA TTTATAAAACATTTA TERM 494 380409 - 380376 - f 100 -17.1 -3.65693 | opp_overlap 380376 380374 ATTATATATTTCAAA TCCTTCATTAAAAGA TATT TCTTTTAATGAAGGA TATTTATAAAACATT TERM 495 380376 - 380409 + F 100 -17.1 -3.52678 | opp_overlap 380376, overlap 380374 ATTATATATTTCAAA TCCTTCATTAAAAGA TATT TCTTTTAATGAAGGA TATTTATAAAACATT TERM 496 380649 - 380630 - g 78 -8 -4.04773 | opp_overlap 380634, overlap 380622 380634 GAAGAAGTTAAAGAA GAAATTCT TTCA AGAATTTC AGGAACTACTGATAT TERM 497 380819 - 380805 - g 71 -8.6 -2.77899 | overlap 380802 380810 CGTCTTTATCAATCA CTGAAG TTG CTTCAG CAACTAAGAGAGCTG CLH_0365 380441 - 381289 + | 3-hydroxybutyryl-coa dehydrogenase TERM 498 381303 - 381325 + F 100 -12.8 -6.23317 | AAAATTACATTTTTG GACTCAAGCA TTA TGCTTGGGTC TTTTTTTATTTTTAT CLH_0366 381449 - 381883 + | hypothetical protein TERM 499 382757 - 382770 + G 76 -6.7 -4.46212 | opp_overlap 382766 ATGTGTGGGTTAAGC GTGCA ATGA TGCAC TTTTATAATGCAGAA CLH_0367 381973 - 382899 + | 8-oxoguanine DNA glycosylase CLH_0368 383061 - 384545 + | iron-dependent hydrogenase TERM 500 384598 - 384547 - f 82 -10.6 -2.93737 | gap 1, opp_overlap 384548 384552 384564, overlap 384564 ATTTAGAAAGATAAT TTTAAATTGCAAAAAAAGAAGCCCT TTT AGGACTTCTTTTTTTGTAAA-TAAA TTGGTAATTATGTGT TERM 501 384548 - 384598 + F 95 -12.2 -3.32333 | opp_overlap 384547 384564, overlap 384552 384564 TTTAGAAAGATAATT TTAAATTGCAAAAAAAGAAGCCCT TTT AGGACTTCTTTTTTTGTAAATAAA TTGGTAATTATGTGT TERM 502 384552 - 384594 + F 90 -13 -2.59035 | opp_overlap 384547 384564, overlap 384548 384564 GAAAGATAATTTTAA ATTGCAAAAAAAGAAGCCCT TTT AGGACTTCTTTTTTTGTAAA TAAATTGGTAATTAT TERM 503 384564 - 384582 + F 93 -7.4 -5.64274 | opp_overlap 384547 384564, overlap 384552 384548 TAAATTGCAAAAAAA GAAGCCCT TTT AGGACTTC TTTTTTTGTAAATAA TERM 504 384582 - 384564 - f 100 -9.6 -5.49809 | opp_overlap 384564 384552 384548, overlap 384547 TAAATTGCAAAAAAA GAAGCCCT TTT AGGACTTC TTTTTTTGTAAATAA CLH_0369 384744 - 385439 + | alkaline phosphatase synthesis transcriptional regulatory proteinphoP TERM 505 385823 - 385809 - g 72 -5.8 -4.62772 | opp_overlap 385817, overlap 385819 TTGAAAGGAAATAAA TCTTAT ATT ATAAGA AGGATTGAAGAATCT CLH_0370 385443 - 386858 + | two-component sensor histidine kinase CLH_0371 386883 - 387722 + | hypothetical protein TERM 506 388225 - 388211 - g 70 -5.8 -4.43351 | AGATGGGAAAAAGAA TTCAAT GAT ATTGAA AAACCAAAAACACTA TERM 507 388594 - 388582 - g 77 -7.7 -4.16033 | opp_overlap 388582 TGGAAAGAATAAGAA GGCTT CTG AAGCC TTTATGAATTACTGT TERM 508 388582 - 388594 + G 75 -7.7 -3.99228 | opp_overlap 388582 TGGAAAGAATAAGAA GGCTT CTG AAGCC TTTATGAATTACTGT CLH_0372 387743 - 388792 + | ABC transporter, substrate-binding protein TERM 509 388793 - 388850 + F 81 -10.5 -2.57067 | opp_overlap 388796 388801, overlap 388796 388801 GAAGAAATAATGTGA TAAGAAAATTAGGATATTAAATAAA ATCATTTA TATATTTAATATCCTAATTTTATTA TAACTTAAATATTAA TERM 510 388847 - 388796 - f 70 -7.8 -3.4082 | opp_overlap 388793 388796 388801, overlap 388801 GAAATAATGTGATAA GAAAATTAGGATATTAAATAAA ATCATTTA TATATTTAATATCCTAATTTTA TTATAACTTAAATAT TERM 511 388796 - 388847 + F 70 -7.8 -3.43117 | opp_overlap 388796 388801, overlap 388793 388801 GAAATAATGTGATAA GAAAATTAGGATATTAAATAAA ATCATTTA TATATTTAATATCCTAATTTTA TTATAACTTAAATAT TERM 512 388801 - 388842 + F 86 -7.7 -4.80959 | opp_overlap 388796 388801, overlap 388796 388793 AATGTGATAAGAAAA TTAGGATATTAAATAAA ATCATTTA TATATTTAATATCCTAA TTTTATTATAACTTA TERM 513 388842 - 388801 - f 86 -7.7 -4.78839 | opp_overlap 388801 388796 388793, overlap 388796 AATGTGATAAGAAAA TTAGGATATTAAATAAA ATCATTTA TATATTTAATATCCTAA TTTTATTATAACTTA TERM 514 389118 - 389150 + F 82 -9.3 -3.34522 | opp_overlap 389117 389116, overlap 389119 389121 GATATTATAATAATT GTATTAGCACTCAAT GCT ATCGAGTGCTAATAG TTAATTAGAAAATAT TERM 515 389119 - 389149 + F 90 -12.8 -2.60392 | opp_overlap 389117 389116, overlap 389118 389121 ATATTATAATAATTG TATTAGCACTCAAT GCT ATCGAGTGCTAATA GTTAATTAGAAAATA TERM 516 389121 - 389147 + F 85 -11 -2.84098 | opp_overlap 389117 389116, overlap 389119 389118 ATTATAATAATTGTA TTAGCACTCAAT GCT ATCGAGTGCTAA TAGTTAATTAGAAAA groS 389196 - 389480 + | chaperonin GroS TERM 517 390193 - 390167 - g 74 -2.4 -5.66684 | opp_overlap 390167 390169, overlap 390187 TAACTGATAAAAAAA TAGGTAATAT ACAAGAA ATATTGCCTA TATTAGAGCAAATAG groL 389494 - 391116 + | chaperonin GroL TERM 518 391118 - 391155 + F 93 -10.1 -3.89055 | opp_overlap 391128, overlap 391119 391128 391147 ATGGGATGTATTAAT AAATAAAAAAGACTACC AGTT GGTAGTCTTTTTTATGC TTTATAAAAATATAT TERM 519 391119 - 391154 + F 93 -13.6 -2.92951 | opp_overlap 391128, overlap 391118 391128 391147 TGGGATGTATTAATA AATAAAAAAGACTACC AGTT GGTAGTCTTTTTTATG CTTTATAAAAATATA TERM 520 391145 - 391128 - f 100 -9.9 -5.80003 | opp_overlap 391128 391119 391118 TTAATAAATAAAAAA GACTACC AGTT GGTAGTC TTTTTTATGCTTTAT TERM 521 391128 - 391145 + F 100 -9.9 -5.43621 | opp_overlap 391128, overlap 391119 391118 TTAATAAATAAAAAA GACTACC AGTT GGTAGTC TTTTTTATGCTTTAT TERM 522 391313 - 391288 - f 70 -7.9 -3.32993 | opp_overlap 391291, overlap 391284 391291 TGACTTAGATAGCAA TAATTAAAATA ATAA TATTTTAATTA TTGGAGGATAATATT TERM 523 391380 - 391370 - g 82 -2.6 -6.02345 | opp_overlap 391370 TAAGTATAAAAAAAA TAAA GGA TTTA CTTTATTAGAACTTA TERM 524 391577 - 391565 - g 84 -3.5 -5.86609 | TGAAAAAAATAAAAA TATAT CTA ATATA AAAGATGATAAAAGT CLH_0375 391329 - 391733 + | putative pilin TERM 525 391950 - 391979 + F 100 -8 -6.24157 | opp_overlap 391950, overlap 391923 391918 TTTGAGATATATTAA CGTATTAACTTC ACTTAC GGAGTTAATGCG TTTTTTTTTATACAT TERM 526 393283 - 393265 - g 76 -9 -3.07227 | overlap 393267 GGATCAAAGGACAGA TATTTCCA AGA TGGAAATA AAAAATTAGTACCAG guaB 392068 - 393522 + | inosine-5'-monophosphate dehydrogenase TERM 527 393829 - 393840 + G 71 -4.4 -4.85129 | AAGCTATATTTGAAT TAGG TGTG CCTA TTTTTGGTATATGCT guaA 393609 - 395150 + | GMP synthase TERM 528 395163 - 395216 + F 82 -8.7 -4.07133 | gap 1, opp_overlap 395151 395170, overlap 395170 TAATATTAAAGAAGT TAATAAACATTTCAACAAAGTCTA AATTAAC TAGG-TTTGTTGAAATGTTTTTTA TTATTTATGAAAGTG TERM 529 395170 - 395209 + F 90 -6.8 -5.74288 | gap 1, opp_overlap 395170, overlap 395163 AAAGAAGTTAATAAA CATTTCAACAAAGTCTA AATTAAC TAGG-TTTGTTGAAATG TTTTTTATTATTTAT CLH_0378 395463 - 396626 + | FliB domain protein CLH_0379 396698 - 397543 + | polysaccharide deacetylase family protein TERM 530 397620 - 397660 + F 100 -10.9 -5.95539 | gap 1, opp_overlap 397620 ATAAATATTAAAAAA TAGTTGAATTTTGTGGTA ATTAAA TAC-ACAAAATTCAACTA TTTTTTTATTTACAA TERM 531 397660 - 397620 - f 100 -10.9 -5.34055 | gap 1, opp_overlap 397620 ATAAATATTAAAAAA TAGTTGAATTTTGTGGTA ATTAAA TAC-ACAAAATTCAACTA TTTTTTTATTTACAA CLH_0380 397768 - 398217 + | hypothetical protein TERM 532 398289 - 398263 - f 100 -15.4 -3.52475 | opp_overlap 398263 TTTAATATATTATAA GAGAGTTTATAC TTT GTATAAACTCTC TTTTTTAATAAAAAT TERM 533 398263 - 398289 + F 100 -15.4 -5.14965 | opp_overlap 398263 TTTAATATATTATAA GAGAGTTTATAC TTT GTATAAACTCTC TTTTTTAATAAAAAT TERM 534 398799 - 398789 - g 74 -4 -5.18995 | opp_overlap 398789, overlap 398781 AATAGAAGACAAAAA CAAA AAT TTTG TCAATTAAATAATCC TERM 535 399628 - 399652 + G 80 -10.1 -2.77895 | overlap 399627 GTATAAATTGCCTTA TGAAGTTGCTA AAA TAGCGGCTTCA GTTATTGAAGATAAG CLH_0381 398531 - 400495 + | putative transcription antiterminator CLH_0382 400499 - 400915 + | glucitol operon activator protein CLH_0383 400947 - 401507 + | PTS system, glucitol/sorbitol-specific, IIC component CLH_0384 401604 - 401975 + | glucitol/sorbitol-specific phosphotransferase enzyme iib component CLH_0385 402024 - 402590 + | PTS system, glucitol/sorbitol-specific, IIBC component TERM 536 402968 - 402952 - g 90 -3.7 -5.96219 | opp_overlap 402956, overlap 402956 TACTTAGAAAAAAAA GAAATTG CAC CAATTGC CGTTGGTACAATCTT TERM 537 402979 - 402956 - g 89 -6.1 -5.39407 | opp_overlap 402956, overlap 402952 TAGAAAAAAAAGAAA TTGCACCAA TTGCCG TTGGTACAA TCTTAAAAATAATAA CLH_0386 402637 - 403002 + | putative PTS system, glucitol/sorbitol-specific IIA component TERM 538 403280 - 403270 - g 75 -5.4 -4.88067 | opp_overlap 403270 ATGGAGGGATAAAAA TGAC AAA GTCA TGGTTAAATCTAGAA CLH_0387 403269 - 404090 + | sorbitol-6-phosphate 2-dehydrogenase TERM 539 404203 - 404167 - f 100 -11.1 -4.50993 | opp_overlap 404169 404175, overlap 404175 TTAAATAAATATAAA CATTAAAAGTTCCTAAT ATT ATAAGGGACTTTTAATG CTATAAAGAGAATTT TERM 540 404169 - 404201 + F 79 -10.1 -2.62263 | opp_overlap 404167 404175, overlap 404175 AAATAAATATAAACA TTAAAAGTTCCTAAT ATT ATAAGGGACTTTTAA TGCTATAAAGAGAAT CLH_0388 404250 - 404918 + | putative transaldolase TERM 541 404947 - 404989 + F 95 -10.3 -4.31688 | opp_overlap 404937 404950 404955, overlap 404987 TAAAACTAGTTTTAA TTATAAAAGTAGATAGATT TATAT AATTTATCTACTTTCATAA TTTTAAATTACTGTT TERM 542 405347 - 405328 - g 76 -4.4 -5.33785 | gap 1, opp_overlap 405328 405333, overlap 405333 AAGCAGCAGAAAAAA TACAATCTG ATT CAGAT-GTA TTAGTAGTTATAGGA pgi 405120 - 406469 + | glucose-6-phosphate isomerase TERM 543 406518 - 406487 - g 71 -8.8 -2.81604 | opp_overlap 406490, overlap 406486 406490 TATGAAAATTATAAT TGATGGAGATGCCT GCCC AGGTATCTCCATTA TTGAAAAAGTGGCTA TERM 544 406515 - 406490 - g 81 -10.5 -2.65876 | opp_overlap 406490, overlap 406487 406486 GAAAATTATAATTGA TGGAGATGCCT GCCC AGGTATCTCCA TTATTGAAAAAGTGG TERM 545 406490 - 406515 + G 100 -12.7 -3.62046 | opp_overlap 406487 406486 406490 GAAAATTATAATTGA TGGAGATGCCT GCCC AGGTATCTCCA TTATTGAAAAAGTGG CLH_0390 406473 - 406919 + | Emg2 protein TERM 546 406917 - 406934 + F 95 -5.6 -6.13 | opp_overlap 406915 406917 GTTAATAAAAATATA TAGAGG AGAATA CCTCTA TTTTTTTTTCAGTAT CLH_0391 407067 - 409097 + | two component regulator three Y motif protein CLH_0392 409276 - 410016 + | lytic murein transglycosylase TERM 547 410024 - 410071 + F 88 -11.8 -2.84841 | opp_overlap 410024 410036, overlap 410036 GAATTTAGCATAAAC TAAATAGAAAAATGAAGTTATT TAAT AATGACTTCATTTTTTTATTGA TCACTTTTATTAAGA TERM 548 410036 - 410059 + F 100 -7.6 -5.84381 | opp_overlap 410024 410036, overlap 410024 AACTAAATAGAAAAA TGAAGTTATT TAAT AATGACTTCA TTTTTTTATTGATCA TERM 549 410059 - 410036 - f 78 -5.4 -5.23644 | opp_overlap 410036 410024, overlap 410024 AACTAAATAGAAAAA TGAAGTTATT TAAT AATGACTTCA TTTTTTTATTGATCA CLH_0393 410232 - 410948 + | RNA pseudouridine synthase family protein TERM 550 411121 - 411144 + F 100 -6 -6.34616 | gap 1, opp_overlap 411121 411120 TGCTTATTGCTAAAG CGCAA-CCTAG CCC CAAGGGTTGCG TTTTTTTTGTTTTCA TERM 551 411308 - 411254 - f 91 -7.4 -5.50499 | opp_overlap 411258, overlap 411258 TTAGATGTAAAAAAA TAAATGAAGGAATTAAGTCTTTAATT TAG AATATGTGACTTAATTCCTTCATTTT TAGTTGATTTTATAT TERM 552 411304 - 411258 - f 95 -8.2 -5.21683 | opp_overlap 411258, overlap 411254 ATGTAAAAAAATAAA TGAAGGAATTAAGTCTTTAATT TAG AATATGTGACTTAATTCCTTCA TTTTTAGTTGATTTT TERM 553 411258 - 411304 + F 100 -10.4 -4.97312 | opp_overlap 411258 411254 ATGTAAAAAAATAAA TGAAGGAATTAAGTCTTTAATT TAG AATATGTGACTTAATTCCTTCA TTTTTAGTTGATTTT CLH_0394 411482 - 413731 + | ATP-dependent DNA helicase PcrA TERM 554 415719 - 415702 - g 79 -3.5 -5.63103 | gap 1, overlap 415706 415716 GTGTAAGTAAAAAAA CAGACTAT GTA ATAG-CTG GAGAATCAGCAGGAT ligA 413814 - 415817 + | DNA ligase, NAD-dependent CLH_0396 415967 - 416089 + | hypothetical protein gatC 416187 - 416480 + | glutamyl-tRNA(Gln) amidotransferase, C subunit CLH_0398 416499 - 417956 + | glutamyl-tRNA(Gln) amidotransferase subunit A TERM 555 418007 - 418019 + G 70 -6.3 -4.21908 | opp_overlap 418007 418001 GTCATAGGATTAGAA GTTCA TGC TGAAC TTTTAACTAATACTA gatB 417977 - 419407 + | glutamyl-tRNA(Gln) amidotransferase, B subunit TERM 556 419475 - 419418 - T 100 -24.9 -2.60494 | opp_overlap 419418 419418 419420 419423 419426 419431, overlap 419423 419426 419431 GATAAACAAAAGTAT TAGAATAAGAAAACCTACTATGAAA TTAAAATG TTTCATAGTAGGTTTTCTTATTCTA ATTCTTCGGATTTGT TERM 557 419418 - 419476 + T 100 -19.6 -3.71991 | gap 1, opp_overlap 419418 419423 419426 419431, overlap 419418 419420 419423 419426 419431 GATAAACAAAAGTAT -TAGAATAAGAAAACCTACTATGAAAT TAAAAT GTTTCATAGTAGGTTTTCTTATTCTAA TTCTTCGGATTTGTC TERM 558 419418 - 419475 + T 100 -25.6 -2.82471 | opp_overlap 419418 419423 419426 419431, overlap 419418 419420 419423 419426 419431 GATAAACAAAAGTAT TAGAATAAGAAAACCTACTATGAAAT TAAAAT GTTTCATAGTAGGTTTTCTTATTCTA ATTCTTCGGATTTGT TERM 559 419420 - 419473 + T 100 -23.8 -2.95161 | opp_overlap 419418 419423 419426 419431, overlap 419418 419418 419423 419426 419431 TAAACAAAAGTATTA GAATAAGAAAACCTACTATGAAAT TAAAAT GTTTCATAGTAGGTTTTCTTATTC TAATTCTTCGGATTT TERM 560 419470 - 419423 - T 100 -19 -3.52714 | opp_overlap 419423 419420 419418 419418 419426 419431, overlap 419418 419426 419431 ACAAAAGTATTAGAA TAAGAAAACCTACTATGAAA TTAAAATG TTTCATAGTAGGTTTTCTTA TTCTAATTCTTCGGA TERM 561 419423 - 419470 + T 100 -19.7 -3.61089 | opp_overlap 419418 419423 419426 419431, overlap 419420 419418 419418 419426 419431 ACAAAAGTATTAGAA TAAGAAAACCTACTATGAAAT TAAAAT GTTTCATAGTAGGTTTTCTTA TTCTAATTCTTCGGA TERM 562 419467 - 419426 - T 100 -16.3 -3.87538 | opp_overlap 419426 419423 419420 419418 419418 419431, overlap 419423 419418 419431 AAAGTATTAGAATAA GAAAACCTACTATGAAA TTAAAATG TTTCATAGTAGGTTTTC TTATTCTAATTCTTC TERM 563 419426 - 419467 + T 100 -17 -3.92963 | opp_overlap 419423 419418 419426 419431, overlap 419423 419420 419418 419418 419431 AAAGTATTAGAATAA GAAAACCTACTATGAAAT TAAAAT GTTTCATAGTAGGTTTTC TTATTCTAATTCTTC TERM 564 419462 - 419431 - T 100 -10.4 -4.9645 | opp_overlap 419431 419426 419423 419420 419418 419418, overlap 419426 419423 419418 ATTAGAATAAGAAAA CCTACTATGAAA TTAAAATG TTTCATAGTAGG TTTTCTTATTCTAAT TERM 565 419431 - 419462 + T 100 -11.1 -4.9645 | opp_overlap 419426 419423 419418 419431, overlap 419426 419423 419420 419418 419418 ATTAGAATAAGAAAA CCTACTATGAAAT TAAAAT GTTTCATAGTAGG TTTTCTTATTCTAAT CLH_0400 419767 - 419468 - | hypothetical protein TERM 566 419895 - 419856 - H 75 -5.3 -5.04222 | opp_overlap 419856 419858 TAAGTAAAGCAAAAA TACTAAAACATATATTT GAATAT AATTATCTGTTTTAGTA TAGTGTTGATCTATG CLH_0401 420025 - 421506 + | putative extracellular solute-binding protein TERM 567 421519 - 421559 + T 93 -11.4 -3.41366 | opp_overlap 421522, overlap 421512 421514 421522 TAATTTATTGTAGAT TAAGGCTACATCATTGAT AATAA ATCCATGATATAGCCTTA TATATTTTACAATAC TERM 568 421522 - 421556 + T 79 -8.7 -3.83378 | opp_overlap 421522, overlap 421512 421519 421514 TTTATTGTAGATTAA GGCTACATCATTGAT AATAA ATCCATGATATAGCC TTATATATTTTACAA TERM 569 421556 - 421522 - T 90 -10.9 -3.27022 | opp_overlap 421512 421519 421514 421522 TTTATTGTAGATTAA GGCTACATCATTGAT AATAA ATCCATGATATAGCC TTATATATTTTACAA TERM 570 421603 - 421615 + T 85 -6.3 -5.50313 | TTTGTTACTAGATTT GTCTT TTG AAGAC TTTTTTGATTTTATA CLH_0402 423216 - 421579 - | hypothetical protein rph 423461 - 424210 + | ribonuclease PH rdgB 424214 - 424831 + | non-canonical purine NTP pyrophosphatase, RdgB/HAM1 family CLH_0405 424843 - 425322 + | phosphodiesterase, family TERM 571 425448 - 425418 - f 85 -9.9 -3.24633 | overlap 425416 AGATATTGTAGAATA GTCATTGTCGTCA GGAGA TAACAACAATGAC TCCGGGGTGTGGCGC CLH_0408 425646 - 425774 + | hypothetical protein TERM 572 425897 - 425883 - f 70 -7.8 -3.322 | opp_overlap 425877 AGCTGGATAGAGCAA CGCCCT TCT AAGGCG TGGGCCAGGGGTTCG TERM 573 426166 - 426152 - f 70 -7.8 -3.322 | opp_overlap 426146 AGCTGGATAGAGCAA CGCCCT TCT AAGGCG TGGGCCAGGGGTTCG TERM 574 427283 - 427263 - f 71 -8.3 -3.05343 | opp_overlap 427264 CGTATATCGGTAATA CTCCAGCCT TCC AAGCTGGAA AGGTGGGTTCGATTC TERM 575 427335 - 427320 - f 72 -7.6 -3.64703 | opp_overlap 427320 CCCGCTCCATTTAAA CAACTG ATAA CAGTTG TTTTTTTTATTTATA TERM 576 427320 - 427335 + F 100 -7.6 -6.28967 | opp_overlap 427320 CCCGCTCCATTTAAA CAACTG ATAA CAGTTG TTTTTTTTATTTATA TERM 577 427482 - 427448 - f 90 -10.3 -3.44444 | opp_overlap 427448 427450, overlap 427442 427450 CCATAAACATAGTAA TACCAATAGTTTATA GACAG TATAAACTATTGGTG TTTTTTTTATACTTA TERM 578 427448 - 427482 + F 100 -12.5 -6.02345 | opp_overlap 427448 427442 427450, overlap 427450 CCATAAACATAGTAA TACCAATAGTTTATA GACAG TATAAACTATTGGTG TTTTTTTTATACTTA TERM 579 427480 - 427450 - f 95 -12.9 -3.28265 | opp_overlap 427448 427450, overlap 427448 427442 ATAAACATAGTAATA CCAATAGTTTATA GACAG TATAAACTATTGG TGTTTTTTTTATACT TERM 580 427450 - 427480 + F 100 -12.9 -4.6341 | opp_overlap 427450 427448 427442, overlap 427448 ATAAACATAGTAATA CCAATAGTTTATA GACAG TATAAACTATTGG TGTTTTTTTTATACT CLH_0427 427921 - 428043 + | hypothetical protein CLH_0428 428381 - 428827 + | endothelin-converting enzyme 1 CLH_0429 428828 - 428962 + | endothelin-converting protein 1 TERM 581 429278 - 429261 - f 78 -5.6 -5.16132 | CAGATTAAAACAAAA GTTGAC AATAAA GTCAAC CGAGAAAATTTGGTC TERM 582 430869 - 430850 - f 75 -9.2 -2.65808 | opp_overlap 430853 430856, overlap 430847 430862 AGTCGTAACAAGGTA GCCGTAGG AGAA CCTGCGGC TGGATCACCTCCTTT TERM 583 431407 - 431392 - f 72 -9 -2.69489 | opp_overlap 431392 431394, overlap 431389 GAATGAGGAAACTCA CATGGG AAAC CCCATG TATCGTAAAGTGAAT TERM 584 431392 - 431407 + F 73 -9 -2.79915 | opp_overlap 431392 431389, overlap 431394 GAATGAGGAAACTCA CATGGG AAAC CCCATG TATCGTAAAGTGAAT TERM 585 431551 - 431534 - f 76 -8.5 -3.695 | GGGAAAGAGCCCAAA CCAAAGA TTTA TCTTTGG GGTTGCGGACAGAAC TERM 586 431718 - 431703 - f 81 -10.4 -2.71011 | ACCTTGTGGGAAGCA GGGAGG ACCA CCTCCC AAGGCTAAATACTAC TERM 587 431792 - 431781 - f 75 -7.2 -4.2354 | GAAAGGTGAAAAGAA CCCC GGGA GGGG AGTGAAATAGAACCT TERM 588 432028 - 432018 - f 71 -6.8 -4.15453 | opp_overlap 432021 GAAGCGAGGGTAAAA CCTC GTG GAGG ACCGAACCACGTTGC TERM 589 432617 - 432601 - f 74 -8.7 -3.05343 | CCCACAGGCCGAATA CCTAAGG TTT CCTCAGG AAGGTTCGTCCGCTG TERM 590 434205 - 434224 + F 70 -8 -3.36452 | AATTTATGTGCAATT TTGAAAGA ACAA TCTTTCAA TTAGTATTCCGCGAT TERM 591 434323 - 434337 + F 100 -6.4 -6.19302 | opp_overlap 434323 TTTGATATTAGTAAA GTCGAT TAG ATCGGC TTTTTTTTATTGTCT TERM 592 434562 - 434545 - g 100 -5.7 -6.4275 | opp_overlap 434545 GAAAAACAAAAAAAA GAAAATA ATAT TATTTTC TTCAATAGTTTTAGT CLH_0435 434492 - 435439 + | polysaccharide deacetylase family protein TERM 593 435469 - 435485 + F 100 -9.5 -5.58179 | opp_overlap 435469 TTATAAATATATAAA GAGACTT TTA AAGTCTC TTTTTTATTATAATA TERM 594 435485 - 435469 - f 89 -9.5 -4.31166 | opp_overlap 435469 TTATAAATATATAAA GAGACTT TTA AAGTCTC TTTTTTATTATAATA CLH_0436 435541 - 436230 + | alkaline phosphatase synthesis transcriptional regulatory proteinphoP TERM 595 436254 - 436242 - g 70 -4.9 -4.79384 | ATAATAAAATGAAAA GTATT AAA AATAC ACTAATTAGAAGTTT CLH_0437 436235 - 437632 + | alkaline phosphatase synthesis sensor protein PhoR CLH_0438 437629 - 439086 + | putative lipoprotein CLH_0439 439374 - 440756 + | TldD protein TERM 596 440999 - 440978 - g 78 -8.9 -3.22114 | GATATTAGATGAAGA TTCTATAAG TACT CTTATAGAA AATGCAAAAGGTGCA CLH_0440 440760 - 442103 + | TldD/PmbA family protein TERM 597 442370 - 442397 + T 100 -11.5 -5.65927 | opp_overlap 442370 AATAGACATAAAAAA TAGAAGGACTA ATTTTG TAGTCCTTCTA TTTTTTATTTAGCTA TERM 598 442397 - 442370 - T 100 -11.5 -5.46276 | opp_overlap 442370 AATAGACATAAAAAA TAGAAGGACTA ATTTTG TAGTCCTTCTA TTTTTTATTTAGCTA CLH_0441 444307 - 442457 - | sulfatase CLH_0442 444491 - 445069 + | hypothetical protein gidA 445100 - 446056 + | tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA CLH_0443 446616 - 446053 - | putative esterase TERM 599 446164 - 446211 + g 78 -8 -3.99779 | opp_overlap 446168, overlap 446165 446168 446208 TGAATAAAAATCTAT ATAAGAGAGGCTATAATTAA CAGCTAGA TTGATTATTGCCTCTCTTAA TTTAATTAAATTTTC TERM 600 446165 - 446210 + g 91 -11.5 -2.98783 | opp_overlap 446168, overlap 446164 446168 446208 GAATAAAAATCTATA TAAGAGAGGCTATAATTAA CAGCTAGA TTGATTATTGCCTCTCTTA ATTTAATTAAATTTT TERM 601 446168 - 446207 + g 76 -8.8 -3.6187 | opp_overlap 446168, overlap 446165 446164 TAAAAATCTATATAA GAGAGGCTATAATTAA CAGCTAGA TTGATTATTGCCTCTC TTAATTTAATTAAAT CLH_0445 447247 - 446630 - | endodeoxyribonuclease RusA family TERM 602 447712 - 447726 + G 73 -8.6 -3.11291 | opp_overlap 447711 TGTAGTACCAGAAGT TGCATC TAG GATGCA TATTGAAATTATAGA TERM 603 447771 - 447758 - g 71 -2.4 -5.53991 | opp_overlap 447767 TATGTAGTAAAAAAA GCTT TGGATG AAGC AAATGTTTCTTTAAA CLH_0446 447563 - 448585 + | putative O-sialoglycoprotein endopeptidase CLH_0447 448588 - 449592 + | hypothetical protein TERM 604 449672 - 449628 - f 100 -14.8 -4.71708 | opp_overlap 449629, overlap 449629 AATAATAAATGAAAA TTATGGGATATTAATATATA GTGCA TATATATTAATATCCCATAT TCTTATATTGACATT TERM 605 449671 - 449629 - f 100 -18.3 -3.40585 | opp_overlap 449629, overlap 449628 ATAATAAATGAAAAT TATGGGATATTAATATATA GTGCA TATATATTAATATCCCATA TTCTTATATTGACAT TERM 606 449629 - 449671 + F 100 -18.3 -3.96842 | opp_overlap 449629 449628 ATAATAAATGAAAAT TATGGGATATTAATATATA GTGCA TATATATTAATATCCCATA TTCTTATATTGACAT TERM 607 449894 - 449868 - g 75 -5.2 -4.90519 | AAAGGAAAAAAATAA TTACTAGTATAG CAA CTTCACTAGCAA TAGCATTAGTTGGTG CLH_0448 449756 - 450943 + | trypsin domain protein TERM 608 450946 - 450996 + F 100 -9.5 -5.48303 | gap 1, opp_overlap 450937 450955, overlap 450937 450955 AAAATCTAAATAGTT TAT-TTCAAATGCTCTGTTTAATT ATTA AATTAAACAGAGCATTTTTATATA TTTTTTTAGGGTTCT TERM 609 450986 - 450955 - f 100 -16.2 -3.60805 | opp_overlap 450946 450955 ATAGTTTATTTCAAA TGCTCTGTTTAATT ATTA AATTAAACAGAGCA TTTTTATATATTTTT TERM 610 450955 - 450986 + F 100 -16.2 -5.20633 | opp_overlap 450955, overlap 450946 ATAGTTTATTTCAAA TGCTCTGTTTAATT ATTA AATTAAACAGAGCA TTTTTATATATTTTT CLH_0449 451107 - 451526 + | hypothetical protein TERM 611 451630 - 451653 + F 70 -3.9 -5.16133 | overlap 451632 TTTTGTTTATAAAAA GTCTTCTTT TATAAT AAAGGAGGC TTTTTATGTTATACT CLH_0450 451851 - 452933 + | ethanolamine transporter CLH_0451 452959 - 454083 + | putative lipoprotein CLH_0452 455207 - 454086 - | mannosyltransferase B TERM 612 454136 - 454156 + g 76 -8.3 -3.81548 | TTTTTATTGCTGTTT GCCTCCA TGTAAAT TGGAGGC TTCTATTATATCCTT CLH_0453 455354 - 456370 + | spore coat protein, CotS family CLH_0454 456345 - 457115 + | hypothetical protein TERM 613 457867 - 457841 - g 80 -8.2 -4.07786 | opp_overlap 457846 GAGAAAATGGACAAA CTATATCATTAT GTC ATAATGATTTAG CATATCATAATTTTT CLH_0455 457204 - 458256 + | spore coat protein, CotS family TERM 614 458296 - 458321 + T 100 -12.7 -4.73448 | opp_overlap 458296 TTAAAATAATAAAAA GCTGTCTCAAA ATTA TTTGAGGCAGC TTTTTAAGTATATAT TERM 615 458321 - 458296 - T 100 -10.5 -5.4593 | opp_overlap 458296 TTAAAATAATAAAAA GCTGTCTCAAA ATTA TTTGAGGCAGC TTTTTAAGTATATAT CLH_0456 459592 - 458450 - | mannosyltransferase B TERM 616 460208 - 460181 - g 100 -6.6 -5.69068 | gap 1 GAAAAATATAAAAAA TGATTTT-GATAT GAT ATATCTAAAATCA ATGGAATTTTATAGA CLH_0457 459702 - 460703 + | spore coat protein CotS TERM 617 460718 - 460760 + F 100 -16.7 -4.53036 | opp_overlap 460721, overlap 460721 ATGAATATGATAGGA AAAGTCCCATTAATATAAG TTGTT CTTATATTAATGGGACTTA TTTTAATGTTTATGA TERM 618 460721 - 460757 + F 100 -18.4 -4.34993 | opp_overlap 460721, overlap 460718 AATATGATAGGAAAA GTCCCATTAATATAAG TTGTT CTTATATTAATGGGAC TTATTTTAATGTTTA TERM 619 460757 - 460721 - f 100 -18.4 -4.38774 | opp_overlap 460718 460721 AATATGATAGGAAAA GTCCCATTAATATAAG TTGTT CTTATATTAATGGGAC TTATTTTAATGTTTA TERM 620 460886 - 460905 + F 73 -2.2 -5.72207 | ATATTTTTAGAAGTT TTTGTAGA GAGT TATACAAA TTTTTTTAGTTTAAA CLH_0458 461028 - 461891 + | sporulation peptidase YabG CLH_0459 462079 - 462321 + | protein veg TERM 621 462323 - 462339 + F 100 -9.5 -6.4753 | opp_overlap 462323 CGCAATCAATATAAA CTTCGAT TAA ATCGAAG TTTTTTTTTGTTTAA TERM 622 462339 - 462323 - f 89 -9.5 -4.2772 | opp_overlap 462323 CGCAATCAATATAAA CTTCGAT TAA ATCGAAG TTTTTTTTTGTTTAA TERM 623 462479 - 462455 - f 100 -8.7 -5.9667 | opp_overlap 462462 AAAAACATAAAAAAA GAAAGATGG TGGGTTT CCATCTTTC AACTATGGTATAAAA CLH_0460 462735 - 464297 + | LysM domain containing membrane protein TERM 624 464355 - 464381 + F 70 -3.1 -5.44837 | opp_overlap 464344 464356, overlap 464356 AATATAAATAGAAAA AGACTTATTAT GTGTA ATAATGAGTCC TTTTTCTATTTTTTT TERM 625 464380 - 464356 - f 73 -4.4 -5.26155 | opp_overlap 464355 464356, overlap 464344 ATATAAATAGAAAAA GACTTATTAT GTGTA ATAATGAGTC CTTTTTCTATTTTTT CLH_0461 464457 - 465302 + | cyanophycinase cphA 465274 - 467892 + | cyanophycin synthetase TERM 626 468813 - 468826 + G 71 -2.4 -5.52986 | ATGAGTGGAAGTGGT CCAA CAGTAT TTGG TTTTTTTGATGACAT ispE 468072 - 468914 + | 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase spoIIR 468976 - 469602 + | stage II sporulation protein R CLH_0465 469640 - 470632 + | argininosuccinate synthase CLH_0466 470702 - 471124 + | hypothetical protein TERM 627 471137 - 471178 + F 76 -8.4 -3.65828 | opp_overlap 471122, overlap 471147 TAAATAGTAAATATT TAATGAAAAAGATAATCT ATATAG AGGTTATCTTTTTTGTTA TTTAGAAATTTATAT TERM 628 471147 - 471168 + F 79 -3.8 -5.72254 | overlap 471137 ATATTTAATGAAAAA GATAATCT ATATAG AGGTTATC TTTTTTGTTATTTAG TERM 629 471632 - 471614 - g 77 -3.2 -5.626 | opp_overlap 471616, overlap 471618 GATTTTAGAAAAAAA TATTTTGA AAT TCAAGATA ATATAGATAGAATAG CLH_0467 471359 - 471658 + | hypothetical protein TERM 630 472707 - 472695 - g 79 -4.9 -5.43866 | TAATGGTTAAAAAAA TTAAG AGT CTTAA AGAAAAAGTTGAAAT pyrG 471842 - 473443 + | CTP synthase TERM 631 473492 - 473441 - f 100 -12.1 -5.54907 | opp_overlap 473446 473449 473453 473486 473488 GCTATAAAACAAAAA TAATATAAGAAAGAGTTTTCTTT ATTAGA AAAGAGAACTCTTTTTTATATTA AGATAATAATATATT TERM 632 473446 - 473487 + F 90 -12 -3.07222 | opp_overlap 473441, overlap 473449 473453 473486 AAAACAAAAATAATA TAAGAAAGAGTTTTCTTT ATTAGA AAAGAGAACTCTTTTTTA TATTAAGATAATAAT TERM 633 473453 - 473480 + F 100 -7.9 -5.47159 | opp_overlap 473441, overlap 473449 473446 AAATAATATAAGAAA GAGTTTTCTTT ATTAGA AAAGAGAACTC TTTTTTATATTAAGA TERM 634 473748 - 473733 - f 73 -3.4 -5.5112 | overlap 473726 473739 TTTATTAATAAAAAA TTTAAA TTAG TTTAAA TAACTAATAAATAAA TERM 635 473765 - 473788 + F 74 -6.2 -4.59993 | opp_overlap 473765 AACTAATAAATAAAA TTATTGTGAT AAAA ATCATAATAA TTTATTTGTCAATTT TERM 636 473788 - 473765 - f 70 -4 -5.13527 | opp_overlap 473765 AACTAATAAATAAAA TTATTGTGAT AAAA ATCATAATAA TTTATTTGTCAATTT TERM 637 473909 - 473896 - g 74 -2.5 -5.73978 | ATTAGAAATAAAAAA TATAT CAAA ATATA AAAAGAAAGAATTAA rho 473822 - 475462 + | transcription termination factor Rho TERM 638 475491 - 475517 + T 100 -11.8 -5.47159 | opp_overlap 475491 TAAGTTGAACAAAAA TAAGTAGAGACT TTA AGTTTCTACTTA TTTTTATTTATTAAA TERM 639 475517 - 475491 - T 100 -9.6 -5.10208 | opp_overlap 475491 TAAGTTGAACAAAAA TAAGTAGAGACT TTA AGTTTCTACTTA TTTTTATTTATTAAA CLH_0470 476617 - 475511 - | putative monogalactosyldiacylglycerol synthase TERM 640 476107 - 476119 + g 70 -4.9 -4.70117 | overlap 476086 TAGGAATGCCTATAG GATAA ATT TTATC TTTCTTTATTCCCTT TERM 641 476755 - 476724 - R 84 -5.2 -5.65927 | gap 1, opp_overlap 476724, overlap 476729 476730 TATGTAAATAAAAAA GAAAATGGGAAAGAC TAA GTCTTTCCC-TTAAC GTTCTATTTAGTATC TERM 642 476751 - 476729 - R 100 -10.6 -5.58051 | opp_overlap 476724, overlap 476724 476730 AAATAAAAAAGAAAA TGGGAAAGAC TAA GTCTTTCCCT TAACGTTCTATTTAG TERM 643 476750 - 476730 - R 100 -14.1 -3.8934 | opp_overlap 476724, overlap 476729 476724 AATAAAAAAGAAAAT GGGAAAGAC TAA GTCTTTCCC TTAACGTTCTATTTA rpmE 476968 - 476759 - | ribosomal protein L31 TERM 644 477393 - 477383 - g 71 -4 -5.07011 | opp_overlap 477383 TATATAAATCAAAAA TCAA AGA TTGA TTGTCTTTTAGTTGA tdk 477146 - 477733 + | thymidine kinase TERM 645 477922 - 477935 + G 81 -3.1 -5.82172 | AAATTTTTAAATATT CCTTT TTTG AGAGG TTTTTTTATATTAAT TERM 646 478478 - 478501 + G 87 -11.2 -2.65884 | opp_overlap 478481, overlap 478481 TATTAAGAATTATAT TAATACCTGT AATT ACAGGTATTA CTTATGAATTAATAA TERM 647 478481 - 478498 + G 75 -8.5 -3.47403 | opp_overlap 478481, overlap 478478 TAAGAATTATATTAA TACCTGT AATT ACAGGTA TTACTTATGAATTAA TERM 648 478498 - 478481 - g 75 -8.5 -3.35176 | opp_overlap 478481 478478 TAAGAATTATATTAA TACCTGT AATT ACAGGTA TTACTTATGAATTAA CLH_0473 477763 - 478671 + | modification methylase, HemK family TERM 649 479230 - 479219 - g 73 -3 -5.49729 | opp_overlap 479219 AATGATGCAAAAAAA TATG ATAT CATA GTTTCTAATCCACCT hemK 478661 - 479527 + | protein-(glutamine-N5) methyltransferase, release factor-specific prfA 479796 - 480878 + | peptide chain release factor 1 TERM 650 480912 - 480935 + F 80 -8.2 -4.21194 | opp_overlap 480912 ATGCATTATTTAACA GCCTTGCATT TTAG AATGTGAGGC TTTTAAATAATAAGG TERM 651 481427 - 481406 - g 95 -8.9 -4.97824 | AAAATCCAAATAAAA CTTACTATT TTCA AATAGTAAG AAAAGGTGGATTGAA CLH_0476 480961 - 481548 + | hypothetical protein CLH_0477 481567 - 482616 + | Sua5/YciO/YrdC/YwlC family protein rpiB 482739 - 483188 + | ribose 5-phosphate isomerase B upp 483234 - 483863 + | uracil phosphoribosyltransferase TERM 652 483921 - 483879 - f 89 -12.5 -2.82586 | gap 1, opp_overlap 483884, overlap 483884 TATATTATAATATTA CAAAAGGAGTATC-TTAAAT AAAA ATTTAAAGATACTCCTTTTA AATTTATCTGTTATA TERM 653 483916 - 483884 - f 100 -10.2 -4.56629 | gap 1, opp_overlap 483884, overlap 483879 TATAATATTACAAAA GGAGTATC-TTAAAT AAAA ATTTAAAGATACTCC TTTTAAATTTATCTG TERM 654 483884 - 483916 + F 100 -10.2 -4.41177 | gap 1, opp_overlap 483884 483879 TATAATATTACAAAA GGAGTATC-TTAAAT AAAA ATTTAAAGATACTCC TTTTAAATTTATCTG CLH_0480 483973 - 484467 + | deoxycytidylate deaminase TERM 655 485665 - 485691 + G 88 -11 -3.12289 | CATACGGAGATGGTA TAGCTTCAACTA GAA TAGTTGATGCTA TATTGAAATATTTTG CLH_0481 484596 - 485744 + | UDP-N-acetylglucosamine 2-epimerase TERM 656 487005 - 486979 - g 72 -3.7 -5.22943 | opp_overlap 486979, overlap 486981 486983 ATGAAATGGAAAAAA GAGATGCTAAA AAAGG TTTAGCAACAC TTTGTATAGGTGGAG CLH_0482 485874 - 487055 + | acetyl-CoA acetyltransferase TERM 657 487085 - 487110 + F 100 -12.1 -6.01369 | opp_overlap 487085 TTACCCTTATAAAAA TTGCTATGATT AAAT AATCATAGCAA TTTTTTTATTCTTTA TERM 658 487110 - 487085 - f 100 -12.1 -4.84359 | opp_overlap 487085 TTACCCTTATAAAAA TTGCTATGATT AAAT AATCATAGCAA TTTTTTTATTCTTTA TERM 659 487265 - 487312 + F 75 -7.5 -3.91352 | opp_overlap 487265 487274 487277, overlap 487266 AAGCTGTATTAAAAA TTTCAAGAATAATTAATATAA TTTTTT TTATATTAATTATATTTGAAG TTTGGTTAAAAATAT TERM 660 487266 - 487311 + F 74 -8.8 -2.94329 | opp_overlap 487265 487274 487277, overlap 487265 AGCTGTATTAAAAAT TTCAAGAATAATTAATATAA TTTTTT TTATATTAATTATATTTGAA GTTTGGTTAAAAATA TERM 661 488217 - 488207 - g 74 -4 -5.24531 | opp_overlap 488207 488203 ACCTTTTATAAAAAA TGTA GAA TACA TTTCTTTTTATATGT TERM 662 488207 - 488217 + G 71 -4 -5.02777 | opp_overlap 488207, overlap 488203 ACCTTTTATAAAAAA TGTA GAA TACA TTTCTTTTTATATGT CLH_0483 487935 - 488300 + | hypothetical protein TERM 663 488720 - 488746 + G 71 -8.2 -3.29461 | overlap 488694 488722 AAGGTTTTGGACATC CATTTATAGGTA TGT TACCTATAAATA TTATGGAAAGAGTTA TERM 664 488722 - 488744 + G 90 -10.8 -3.21395 | overlap 488720 GGTTTTGGACATCCA TTTATAGGTA TGT TACCTATAAA TATTATGGAAAGAGT atpB 488302 - 488982 + | ATP synthase F0, A subunit atpE 489014 - 489229 + | ATP synthase F0, C subunit atpF 489280 - 489759 + | ATP synthase F0, B subunit atpH 489762 - 490301 + | ATP synthase F1, delta subunit atpA 490312 - 491826 + | ATP synthase F1, alpha subunit TERM 665 491820 - 491845 + F 74 -9.1 -2.94708 | opp_overlap 491821, overlap 491819 GATATTTTTACAAGA AGCATAGCTTA GTTT TAAGCTATGCC CTTCTTTAGGAGGTA TERM 666 491844 - 491821 - f 95 -12.6 -3.80174 | opp_overlap 491820 491819 ATATTTTTACAAGAA GCATAGCTTA GTTT TAAGCTATGC CCTTCTTTAGGAGGT atpG 491867 - 492718 + | ATP synthase F1, gamma subunit TERM 667 493535 - 493551 + G 84 -9.5 -3.55563 | opp_overlap 493526 AGAATACCATCAGCA GTTGGTT ACC AACCAAC TTTAGCAACTGAAAT atpD 492734 - 494125 + | ATP synthase F1, beta subunit TERM 668 494121 - 494108 - f 73 -5.3 -4.8543 | GAAGCTGTACAAAAA GCTAA AAGT TTAGC ATAGGGAGATGATTA atpC 494139 - 494543 + | ATP synthase F1, epsilon subunit TERM 669 494547 - 494571 + F 100 -11.5 -5.51165 | opp_overlap 494547 AAAATGAATTAAAAA GCTTGAGAGGA ATA TCCTCTTGAGC TTTTTTTAAAGTTTT TERM 670 494571 - 494547 - f 83 -7.1 -4.97312 | opp_overlap 494547 AAAATGAATTAAAAA GCTTGAGAGGA ATA TCCTCTTGAGC TTTTTTTAAAGTTTT TERM 671 495188 - 495155 - g 89 -9.9 -3.7319 | opp_overlap 495155 495162 495162, overlap 495158 495162 AGGCAGAATAGATAA TGATAAATCATTAAA TGAT TTTAATGATTTAACA TCTCTTACGAATTTA TERM 672 495155 - 495188 + G 81 -9.9 -3.09581 | opp_overlap 495155 495158 495162, overlap 495162 495162 AGGCAGAATAGATAA TGATAAATCATTAAA TGAT TTTAATGATTTAACA TCTCTTACGAATTTA TERM 673 495185 - 495158 - g 80 -10.2 -2.95766 | opp_overlap 495155 495162 495162, overlap 495155 495162 CAGAATAGATAATGA TAAATCATTAAA TGAT TTTAATGATTTA ACATCTCTTACGAAT TERM 674 495181 - 495162 - g 72 -6.6 -4.13 | opp_overlap 495155 495162 495162, overlap 495158 495155 ATAGATAATGATAAA TCATTAAA TGAT TTTAATGA TTTAACATCTCTTAC CLH_0492 494703 - 495341 + | hypothetical protein TERM 675 495344 - 495372 + F 83 -9.2 -3.62478 | opp_overlap 495347 495353, overlap 495347 495366 495370 TACAACATACTAGTA CAATTAAAATAA ACAAC TTATTTTAATTG TTTAACAATTAATTA TERM 676 495366 - 495384 + F 70 -7.6 -3.30441 | opp_overlap 495347 495353, overlap 495347 495344 495370 AATAAACAACTTATT TTAATTGT TTA ACAATTAA TTATGGAGGATAATA TERM 677 496323 - 496343 + G 73 -7.6 -3.84185 | overlap 496326 TTTCCAACTGATATG CAGGCTCA AATGA TGAGCTTG TTATGTTTGACTAAA murA 495399 - 496661 + | UDP-N-acetylglucosamine 1-carboxyvinyltransferase TERM 678 496692 - 496663 - f 100 -10.9 -3.97602 | opp_overlap 496660 496657 496667, overlap 496667 GAATAGATGTATAAA TAAAGGGTGAGAA TGAA TTCTTACCCTTTA AAATTATATTTTTAC TERM 679 496667 - 496688 + F 84 -9.5 -3.72485 | opp_overlap 496663 496667, overlap 496660 496657 AGATGTATAAATAAA GGGTGAGAA TGAA TTCTTACCC TTTAAAATTATATTT TERM 680 496688 - 496667 - f 79 -7.3 -4.58085 | opp_overlap 496667 496660 496657, overlap 496663 AGATGTATAAATAAA GGGTGAGAA TGAA TTCTTACCC TTTAAAATTATATTT spoIID 496779 - 497816 + | stage II sporulation protein D TERM 681 497811 - 497801 - f 73 -2.6 -5.67283 | AATTGAAATAAAAAA TATA ATT TATA AATAAATTTAATCTA TERM 682 497855 - 497902 + F 82 -2.4 -6.28967 | gap 1, overlap 497862 TAAAAAATAAATTAT TAGAAAACAAGCTATGTTATT AAAGAAA AATAATACGGCTTGTTTT-TA TTTTTTTTATTTATA TERM 683 497862 - 497896 + F 76 -3 -5.94743 | overlap 497855 TAAATTATTAGAAAA CAAGCTATGTTATT AAAGAAA AATAATACGGCTTG TTTTTATTTTTTTTA CLH_0495 497975 - 498700 + | conserved membrane-associated protein TERM 684 498760 - 498728 - f 100 -16.7 -4.27192 | opp_overlap 498720 498732 498735 AAATTCTTACTAAAA TGAATAACTCAATAA CAA TTATTGAGTTATTCA TAAAATATTATTTTA TERM 685 498732 - 498756 + F 93 -11.7 -3.19003 | opp_overlap 498728, overlap 498720 498735 TCTTACTAAAATGAA TAACTCAATAA CAA TTATTGAGTTA TTCATAAAATATTAT TERM 686 498735 - 498753 + F 79 -9 -3.73088 | opp_overlap 498728, overlap 498732 498720 TACTAAAATGAATAA CTCAATAA CAA TTATTGAG TTATTCATAAAATAT spoIIID 498791 - 499045 + | sporulation transcriptional regulator spoiiid CLH_0497 499125 - 500159 + | Rod shape-determining protein MreB TERM 687 500208 - 500163 - T 100 -19.5 -5.10461 | opp_overlap 500166, overlap 500166 500171 CTTATTGAATAAAAA GAATAAAATCATCCCAAAACT TAAA AGTTTTGGGATGATTTTATTT TTTTTGATTATATGC TERM 688 500205 - 500166 - T 100 -21.2 -4.64495 | opp_overlap 500166, overlap 500163 500171 ATTGAATAAAAAGAA TAAAATCATCCCAAAACT TAAA AGTTTTGGGATGATTTTA TTTTTTTTGATTATA TERM 689 500166 - 500205 + T 100 -21.2 -5.98781 | opp_overlap 500166 500163 500171 ATTGAATAAAAAGAA TAAAATCATCCCAAAACT TAAA AGTTTTGGGATGATTTTA TTTTTTTTGATTATA TERM 690 500200 - 500171 - T 100 -16.7 -5.18715 | opp_overlap 500166, overlap 500166 500163 ATAAAAAGAATAAAA TCATCCCAAAACT TAAA AGTTTTGGGATGA TTTTATTTTTTTTGA CLH_0498 500724 - 500203 - | putative sporulation protein YyaC CLH_0499 500837 - 501247 + | hypothetical protein TERM 691 501410 - 501400 - f 70 -4 -5.17786 | CAACAAAATGAAAAA CAAA TAT TTTG GAGGAATTCCCGAGT TERM 692 502037 - 502059 + F 100 -8.6 -5.93809 | opp_overlap 502037 TCTTCCTCCACCAAA GAGAATAAAT TAT GTTTATTCTC TTTTTTTTATAAAAA TERM 693 502059 - 502037 - f 73 -7.9 -3.72576 | opp_overlap 502037 TCTTCCTCCACCAAA GAGAATAAA TTATG TTTATTCTC TTTTTTTTATAAAAA TERM 694 502296 - 502312 + F 100 -6.6 -6.01369 | ATTATTGAATTAGTA CTCTTC TTATT GAAGAG TTTTTTTATTCTTTA TERM 695 502986 - 502960 - g 70 -8.2 -3.1315 | overlap 502963 ACAATAAGCCTAAGA GAATAGATACAA TAG TTATATCTACTC AACATGGTGAAGAAG metK 502398 - 503573 + | methionine adenosyltransferase TERM 696 503641 - 503604 - f 100 -9.6 -5.35354 | gap 1, opp_overlap 503604 503626 TATATAATTAAAAAA CTTATCTTACTTATTAA GTATA TTAATA-GTAAGATAAG TTTTTTTACTTTTAC TERM 697 503604 - 503641 + F 100 -9.6 -5.79588 | gap 1, opp_overlap 503604, overlap 503626 TATATAATTAAAAAA CTTATCTTACTTATTAA GTATA TTAATA-GTAAGATAAG TTTTTTTACTTTTAC TERM 698 503808 - 503824 + F 73 -5.3 -4.7871 | opp_overlap 503808 503811 503820, overlap 503794 503822 GTATTATTCATAGTA TAATATT ATA AATATTA TTTTTAATAATAATT CLH_0508 504044 - 506263 + | helicase, RecD/TraA family CLH_0509 506298 - 507311 + | hypothetical protein TERM 699 507514 - 507491 - g 93 -9.8 -4.46587 | opp_overlap 507489 GGAGTAATAAAAGAA CTTATACTTA AATT TAAGTATAAG AATAACTTTACAGCA CLH_0510 507287 - 507940 + | competence protein F TERM 700 508616 - 508604 - g 78 -2.7 -5.86976 | TTAGAAAACAAAAAA CTAAA TTG TCTAG AAAAAAGAGTGGCTC CLH_0511 508336 - 508869 + | ribosomal protein S30AE family TERM 701 508888 - 508908 + F 100 -9 -5.79595 | opp_overlap 508888 508887 TAAAAATGCAAAAAT CCTCTAGC TATTT GCTGGAGG TTTTTTATTTTACAG TERM 702 509009 - 508995 - f 81 -7.2 -4.74013 | opp_overlap 508994 508995 TTTAAATAGAGAAAA CTAGAT AAA ATCTAG GTTTAAGATGATTTT secA 509202 - 511712 + | preprotein translocase, SecA subunit TERM 703 511752 - 511800 + F 100 -9.3 -5.08824 | gap 1, opp_overlap 511752 511753, overlap 511753 AGATAATATAATAAA TTCCGTAG-AAGTTTTGTAGTA AAATCA TATTATAAAACTTGCTACGGAG TTTTTTAAATAACAA TERM 704 511753 - 511799 + F 91 -10.6 -3.64812 | gap 1, opp_overlap 511752 511753, overlap 511752 GATAATATAATAAAT TCCGTAG-AAGTTTTGTAGTA AAATCA TATTATAAAACTTGCTACGGA GTTTTTTAAATAACA CLH_0513 511883 - 512002 + | hypothetical protein prfB 511989 - 513023 + | peptide chain release factor 2 TERM 705 513151 - 513096 - T 75 -9.5 -2.51312 | opp_overlap 513097 513101 513107, overlap 513101 513107 AATTTAGTTAGTAAT TTAAATAAGAAGTTGAGAGTTAA TTAGAAATTT TTAACTCTCAACTTTTTATTTAT TTACTTAAAAAACAT TERM 706 513097 - 513150 + T 100 -15.2 -3.90112 | opp_overlap 513096 513101 513107, overlap 513101 513107 ATTTAGTTAGTAATT TAAATAAGAAGTTGAGAGTTAA TTAGAAATTT TTAACTCTCAACTTTTTATTTA TTTACTTAAAAAACA TERM 707 513146 - 513101 - T 84 -9.4 -3.78597 | opp_overlap 513097 513101 513107, overlap 513096 513107 AGTTAGTAATTTAAA TAAGAAGTTGAGAGTTAA TTAGAAATTT TTAACTCTCAACTTTTTA TTTATTTACTTAAAA TERM 708 513101 - 513146 + T 100 -11.6 -4.56702 | opp_overlap 513101 513096 513107, overlap 513097 513107 AGTTAGTAATTTAAA TAAGAAGTTGAGAGTTAA TTAGAAATTT TTAACTCTCAACTTTTTA TTTATTTACTTAAAA TERM 709 513140 - 513107 - T 79 -8.4 -4.1235 | opp_overlap 513101 513097 513107, overlap 513101 513096 TAATTTAAATAAGAA GTTGAGAGTTAA TTAGAAATTT TTAACTCTCAAC TTTTTATTTATTTAC TERM 710 513107 - 513140 + T 100 -8.4 -5.5454 | opp_overlap 513107 513101 513096, overlap 513101 513097 TAATTTAAATAAGAA GTTGAGAGTTAA TTAGAAATTT TTAACTCTCAAC TTTTTATTTATTTAC CLH_0515 514596 - 513214 - | aminopeptidase TERM 711 514991 - 515009 + G 70 -3.2 -5.1963 | opp_overlap 514991 514994 ATGGAAAAAAGGAAC TTATTCAA GTG TTGAAGAA TTTTTATTAGTTCAA CLH_0516 514797 - 515141 + | hypothetical protein TERM 712 515158 - 515192 + T 100 -15.4 -5.73978 | opp_overlap 515158 AATAACATAAAAAAA TATAAGCTATTCATAT CTT ATGTGAATAGCTTATA TTTTTTATTTATACT TERM 713 515192 - 515158 - T 100 -13.2 -5.86465 | opp_overlap 515158 AATAACATAAAAAAA TATAAGCTATTCATAT CTT ATGTGAATAGCTTATA TTTTTTATTTATACT CLH_0517 515533 - 515201 - | hypothetical protein TERM 714 516221 - 516205 - g 76 -7.3 -4.4352 | overlap 516200 516209 AAAAAGAAAACTAAA GCTACAA TGG CTGTAGC AAGAGGGTTAAAGCC CLH_0518 515869 - 518046 + | protein tex CLH_0519 518275 - 519225 + | exported membrane protein TERM 715 519258 - 519244 - f 80 -2.8 -6.13503 | overlap 519245 TACTAATAAAAAAAA GTGACT AAC AGTCAA TTGCAATACGGATAT TERM 716 519257 - 519245 - f 70 -6.3 -4.25661 | overlap 519244 ACTAATAAAAAAAAG TGACT AAC AGTCA ATTGCAATACGGATA CLH_0520 519413 - 520099 + | hypothetical protein CLH_0521 520124 - 521197 + | hypothetical protein TERM 717 521263 - 521293 + F 100 -9.9 -6.11229 | opp_overlap 521274, overlap 521264 AGAATATTAGTATTA GGCCACTAAAATA AAAAA TATTTTAGTGGCA TTTTTTTATTTTAAT TERM 718 521264 - 521292 + F 100 -13.4 -4.23077 | opp_overlap 521274, overlap 521263 GAATATTAGTATTAG GCCACTAAAATA AAAAA TATTTTAGTGGC ATTTTTTTATTTTAA TERM 719 521687 - 521706 + F 100 -7.2 -6.32976 | GATTTAGTATATGCC CTGATGTA TTTA TGCATCAG TTTTTTTGTTTTTTT CLH_0522 521913 - 522503 + | riboflavin transporter TERM 720 522547 - 522517 - T 100 -15 -5.34632 | opp_overlap 522517 AATAAAATACAAAAA TAATTCGTAAGCTA ATT TAGCCTACGAATTA TTTTTTTCATCTATA TERM 721 522517 - 522547 + T 100 -12.8 -5.60864 | opp_overlap 522517 AATAAAATACAAAAA TAATTCGTAAGCTA ATT TAGCCTACGAATTA TTTTTTTCATCTATA rimI 522993 - 522538 - | ribosomal-protein-alanine acetyltransferase TERM 722 522587 - 522604 + g 76 -4.3 -5.37345 | ATTATTGCATCTTCT TTATTAT CTTG ATAATAA TTTTTTCTAATTCCA CLH_0524 523693 - 522977 - | glycoprotease family protein TERM 723 523024 - 523036 + g 76 -4.1 -5.47218 | overlap 523025 TTTTTTCATACTCTC TCTCA GCT TGAGG TTTTTTTAAATAAAA CLH_0525 524151 - 523690 - | hypothetical protein CLH_0526 524476 - 525342 + | putative ABC transporter substrate-binding lipoprotein TERM 724 525469 - 525501 + T 87 -6.3 -5.71712 | overlap 525474 525498 TAGTGCCCCTGCCAG AAAAGGTCGTAGCAC GTT GTGTTGCGGCTTTTA TTTTTTTGTCTAAAA TERM 725 525474 - 525496 + T 100 -8.4 -5.61277 | overlap 525469 CCCCTGCCAGAAAAG GTCGTAGCAC GTT GTGTTGCGGC TTTTATTTTTTTGTC TERM 726 525827 - 525809 - T 71 -5.4 -4.68456 | overlap 525811 ATTATGAAAAAAGAA CAGTAAAT TAA ATTTACTA ATAAGTTATTTTTGA TERM 727 525967 - 526002 + T 87 -10 -3.4149 | opp_overlap 525970 525975, overlap 525975 525992 525993 CTAGTGCCCCTGCCA TAATAAAAGCTAGAAT TAAT ATTCTAGCTTTTTTTG TATTTAAAATTAAAT TERM 728 525999 - 525970 - T 80 -9.5 -3.28712 | opp_overlap 525967 525975 525992 525993, overlap 525975 GTGCCCCTGCCATAA TAAAAGCTAGAAT TAAT ATTCTAGCTTTTT TTGTATTTAAAATTA TERM 729 525975 - 525994 + T 100 -9.4 -5.88197 | opp_overlap 525970 525975, overlap 525967 525992 525993 CCTGCCATAATAAAA GCTAGAAT TAAT ATTCTAGC TTTTTTTGTATTTAA TERM 730 525994 - 525975 - T 95 -9.4 -4.77165 | opp_overlap 525975 525967 525992 525993, overlap 525970 CCTGCCATAATAAAA GCTAGAAT TAAT ATTCTAGC TTTTTTTGTATTTAA TERM 731 525993 - 526028 + T 81 -10.8 -2.62522 | opp_overlap 525975 525970 526026, overlap 525975 525967 525992 526026 AGAATTAATATTCTA GCTTTTTTTGTATTTA AAAT TAAATATAAAAAAGGC ATTGATATTAAGTAA TERM 732 526062 - 526026 - T 88 -6.8 -5.5762 | gap 1, opp_overlap 525993 525992 526026 ATTAAATATAAAAAA GGCATTGATATTAAGTA AGTT TACA-AACATCAATGCC TTTTAAAAAGTAAAT CLH_0530 527361 - 526294 - | oxidoreductase, 2-nitropropane dioxygenase family TERM 733 527394 - 527420 + H 79 -9 -3.81602 | opp_overlap 527385 527398 527401, overlap 527385 527398 AACAAATTTGATTAT TAAATATTTTGA TTA TCAAAGTATTTA TTATATTATAATTTA CLH_0531 527636 - 527821 + | hypothetical protein TERM 734 527881 - 527908 + F 100 -12.2 -5.38839 | opp_overlap 527881 527898 TTGTGAAACTAGGAA GGTACATTACTT TAAA AGGTAATGTACC TTTTCTTTTTGTATA TERM 735 527908 - 527881 - f 87 -10 -3.32769 | opp_overlap 527881, overlap 527898 TTGTGAAACTAGGAA GGTACATTACTT TAAA AGGTAATGTACC TTTTCTTTTTGTATA TERM 736 528027 - 528015 - f 72 -4.9 -5.08011 | AAAATTTTCAAAAAA TACTA AAA TAGTA TAAAATTGAATTAAT TERM 737 528270 - 528259 - g 73 -3 -5.54403 | AAAAAATAATAAAAA TTTC ACTG GAAA ATAATATCGATATAT CLH_0532 528069 - 529265 + | Ser/Thr protein phosphatase family protein TERM 738 530211 - 530189 - g 79 -4.9 -5.5074 | TAAGGCAAGAAAAAA TTGGAGAGT TAAAT ACTCTACAA AATAAATTAAATGAA TERM 739 531417 - 531393 - g 84 -3.7 -5.7827 | overlap 531396 AAGAGAAATAAAAAA TAGTTCCAATA AAT TATTGAAAATA GAAAAGGAAATAAAG CLH_0533 529621 - 531993 + | hypothetical protein CLH_0534 532079 - 532981 + | ABC transporter, substrate-binding protein TERM 740 533569 - 533559 - g 71 -4 -5.03994 | opp_overlap 533559 GTTGAGAGATAAAAA TATC ACA GATA TATTAATAGACATAA TERM 741 534739 - 534755 + G 71 -8.1 -3.22113 | opp_overlap 534742 534747 534749, overlap 534738 534749 ACAAGAGATAGCTTA GAAGAAA GTA TTTCTTC ATTTTATGCAGAAAT CLH_0535 533314 - 535107 + | MutS domain protein TERM 742 535139 - 535181 + F 81 -8.9 -3.89336 | opp_overlap 535139 ACGTTTTAAAGATAA TTAATATTTTAGTATGGAG TATAT CTTTATATTAAAATATTAA TTTAAGTTTAATTAA CLH_0536 535225 - 536136 + | exonuclease family protein TERM 743 536221 - 536236 + F 70 -2.6 -5.5112 | TACAAGAGAGGATTT TGTTAT GAAT ATAGCA TTTTTTCTTACTCCA CLH_0537 536225 - 536662 + | CBS domain protein TERM 744 536712 - 536655 - T 73 -4.6 -5.22768 | gap 1, opp_overlap 536667 536671, overlap 536667 536671 AGAAGAAAAAAGAAA TAGTATAAATGATAAAGCTGTATTGAA TGAAT TTCAATACAGCTTTATTGTTC-TAATA AAATTACATATTTAA TERM 745 536667 - 536701 + T 100 -16.1 -3.84674 | opp_overlap 536655 536667 536671, overlap 536671 AAATAGTATAAATGA TAAAGCTGTATTGAA TGAAT TTCAATACAGCTTTA TTGTTCTAATAAAAT TERM 746 536701 - 536667 - T 100 -16.1 -3.07254 | opp_overlap 536667 536671, overlap 536655 536671 AAATAGTATAAATGA TAAAGCTGTATTGAA TGAAT TTCAATACAGCTTTA TTGTTCTAATAAAAT TERM 747 536671 - 536697 + T 100 -12.5 -4.53419 | opp_overlap 536667 536655 536671, overlap 536667 AGTATAAATGATAAA GCTGTATTGAA TGAAT TTCAATACAGC TTTATTGTTCTAATA TERM 748 536697 - 536671 - T 100 -12.5 -4.18303 | opp_overlap 536671 536667, overlap 536667 536655 AGTATAAATGATAAA GCTGTATTGAA TGAAT TTCAATACAGC TTTATTGTTCTAATA CLH_0538 537380 - 536724 - | hypothetical protein TERM 749 536933 - 536961 + g 93 -11.3 -3.6249 | opp_overlap 536954 536957, overlap 536929 536957 TAGATGAATTACCAG TATCATTATTGGT TAA ATCAATAATGATA TTATCATGTTTTCTA CLH_0539 538044 - 537391 - | phage shock protein A CLH_0540 538840 - 538079 - | hypothetical protein TERM 750 538626 - 538644 + g 77 -7.5 -4.1196 | GAACTCTTACTGCTT GTTCTAG ATCCA CTAGAAC TTTTACCACTAGATT TERM 751 539017 - 538985 - H 100 -13.1 -5.4182 | opp_overlap 538993 539009, overlap 538987 AATGATAAATAAAAA CATTTAAAGAGTTAT ATT ATAACTCTTTAAATA CGGATTAAAAGTTAT TERM 752 539015 - 538987 - H 100 -13.5 -4.31946 | opp_overlap 538993 539009, overlap 538985 TGATAAATAAAAACA TTTAAAGAGTTAT ATT ATAACTCTTTAAA TACGGATTAAAAGTT TERM 753 538993 - 539009 + H 76 -8.1 -3.65827 | opp_overlap 538987 538985 ATAAAAACATTTAAA GAGTTAT ATT ATAACTC TTTAAATACGGATTA TERM 754 539085 - 539138 + H 100 -14.6 -4.20768 | opp_overlap 539085 TATGTATAAGAATAA GTTAATATTTCATTTTATAATT TGTACATAAT AATTATAAAATGAAATATTAAC TTATTTATTAAACAT TERM 755 539138 - 539085 - H 100 -14.6 -4.03888 | opp_overlap 539085 TATGTATAAGAATAA GTTAATATTTCATTTTATAATT TGTACATAAT AATTATAAAATGAAATATTAAC TTATTTATTAAACAT CLH_0541 539329 - 540465 + | putative 30S ribosomal protein S1 homolog TERM 756 540628 - 540663 + T 82 -9.2 -3.30457 | overlap 540626 540652 TCACATTTACTGCTT GTCCAATTTTATATTG GGAG CAAGCTAAAATTGGAC TATATTCATTTTTAG TERM 757 540721 - 540777 + T 100 -12.9 -4.23434 | gap 1, opp_overlap 540727, overlap 540722 540727 CTATTAATACATAGA TTAAAATAAGCTGTTTCAA-ATACAA GGGATA TTGTATATTGAAACAGCTTATTTGAG TTTTAAAGTATTTTA TERM 758 540722 - 540776 + T 100 -14.2 -3.12976 | gap 1, opp_overlap 540727, overlap 540721 540727 TATTAATACATAGAT TAAAATAAGCTGTTTCAA-ATACAA GGGATA TTGTATATTGAAACAGCTTATTTGA GTTTTAAAGTATTTT TERM 759 540727 - 540771 + T 100 -14.1 -3.93061 | gap 1, opp_overlap 540727, overlap 540722 540721 ATACATAGATTAAAA TAAGCTGTTTCAA-ATACAA GGGATA TTGTATATTGAAACAGCTTA TTTGAGTTTTAAAGT TERM 760 540771 - 540727 - T 100 -14.1 -4.41956 | gap 1, opp_overlap 540722 540721 540727 ATACATAGATTAAAA TAAGCTGTTTCAA-ATACAA GGGATA TTGTATATTGAAACAGCTTA TTTGAGTTTTAAAGT pyk 542227 - 540809 - | pyruvate kinase TERM 761 543681 - 543660 - g 82 -8.9 -3.83921 | TCTAAGATAAGAGAA CTTTGTAAA ACTG TTTACAAAG AAATGTATAATGAAG CLH_0543 542430 - 543884 + | aminoacyl-histidine dipeptidase TERM 762 543922 - 543966 + F 100 -11.2 -4.46581 | opp_overlap 543905 543926, overlap 543926 543963 AATAATTATCTTATT TAAAGGTATGTAGTAAAA CTTTTTTGT TTTTATTACATACCTTTA TTTTATAAAATTTTA TERM 763 543926 - 543962 + F 86 -7.6 -4.77775 | opp_overlap 543926, overlap 543922 ATTATCTTATTTAAA GGTATGTAGTAAAA CTTTTTTGT TTTTATTACATACC TTTATTTTATAAAAT CLH_0544 544201 - 544713 + | acetyltransferase, gnat family CLH_0545 544837 - 545493 + | hypothetical protein maf 545730 - 546296 + | septum formation protein Maf TERM 764 546743 - 546722 - g 71 -7.5 -3.56972 | opp_overlap 546726, overlap 546726 546735 546738 AGTTTATTAAAGCAA GAAATATTA AAAG TAATATTTC TAAATACTAAAAATA CLH_0547 546341 - 547030 + | DNA repair protein RadC TERM 765 547329 - 547307 - g 78 -7.2 -4.46835 | ACAATGTTAAAGAAA TTAATAGAAA AAG TTTCTACTAA AAATGCATTTAAGAG CLH_0548 547049 - 548149 + | Rod shape-determining protein MreB mreC 548153 - 548998 + | rod shape-determining protein MreC mreD 549009 - 549500 + | rod shape-determining protein MreD CLH_0551 549497 - 552412 + | penicillin-binding Protein dimerisation domain family TERM 766 552465 - 552434 - f 100 -9 -5.51353 | opp_overlap 552434 GAAAAACAATAAAAA GTTATCTTAAAC AAATTTAA GTTTAAGATAAC TTTTTTATTTACGAA TERM 767 552434 - 552465 + F 100 -9 -5.63517 | opp_overlap 552434 GAAAAACAATAAAAA GTTATCTTAAAC AAATTTAA GTTTAAGATAAC TTTTTTATTTACGAA minC 552784 - 553431 + | septum site-determining protein MinC minD 553450 - 554247 + | septum site-determining protein MinD minE 554260 - 554526 + | cell division topological specificity factor MinE TERM 768 554530 - 554559 + F 73 -6.8 -4.26351 | ATAAGAAGATAATGT TTATAATAAAAT ATTAAA ATTTTATTATAA TTTGTTGAATTAATA TERM 769 555342 - 555315 - g 71 -7.6 -3.5882 | opp_overlap 555313, overlap 555299 TACAGGATTTTTAAA TCCTGAAGCGGC AGAT GCCACATCGGGA TATCACTTAACACAG CLH_0555 554653 - 555786 + | stage V sporulation protein E TERM 770 555797 - 555776 - f 87 -3.9 -6.17268 | opp_overlap 555780 TGAGAAGAAAAAAAA TACATTTTT AGAT AAAAATATA TATTACATGGTTTAA mgsA 555831 - 556190 + | methylglyoxal synthase TERM 771 556229 - 556252 + F 100 -7.5 -5.49234 | opp_overlap 556229 AGAAGTTATATAGAA GCAGGTGAT ATAGTA ATCATCTGC TTTTTTGTTGCATAT TERM 772 556407 - 556417 + F 72 -4 -5.29782 | overlap 556397 AGTAGTGAAATATTT CATA ATA TATG TTTTTTATAAATATA TERM 773 556467 - 556508 + F 72 -8.3 -3.28708 | opp_overlap 556467 TAGACCTAGTATTAA CGAAATAGCTAGAATTA ATAATCTG TAAGTCTAGTTATTTCG TTAATATAAAATTTA CLH_0557 556545 - 557342 + | putative cell wall endopeptidase, family M23/M37 TERM 774 558002 - 557989 - g 70 -3.1 -5.20216 | GATATGATTAAAAAA TCCAG AAAG CTAGA AAAATATGATTATAT CLH_0558 557371 - 558246 + | sterol-regulatory element binding protein TERM 775 558329 - 558355 + F 89 -9.7 -4.34402 | opp_overlap 558329 AGGGTTATCAAAAAA TAAGAAGTATA CTTGT TATACTTCTTA TTTTAATGTAGAAGA TERM 776 558355 - 558329 - f 100 -9.7 -5.14965 | opp_overlap 558329 AGGGTTATCAAAAAA TAAGAAGTATA CTTGT TATACTTCTTA TTTTAATGTAGAAGA TERM 777 558418 - 558430 + F 72 -4.9 -5.00616 | opp_overlap 558415 558418 AAATAGAAAGAATAA TCATA TTT TATGA TTTTTTAAGGAGGAA CLH_0559 558456 - 560309 + | radical SAM domain protein CLH_0560 560293 - 561006 + | hypothetical protein CLH_0561 561086 - 562534 + | ribonuclease, Rne/Rng family rplU 562729 - 563040 + | ribosomal protein L21 CLH_0563 563045 - 563431 + | hypothetical protein rpmA 563436 - 563735 + | ribosomal protein L27 TERM 778 563768 - 563753 - f 100 -10.4 -4.41616 | opp_overlap 563753 ATTTTTTGAAATAAA GCACCC AACA GGGTGC TTTTTAAGTTATATT TERM 779 563753 - 563768 + F 100 -10.4 -4.8066 | opp_overlap 563753 ATTTTTTGAAATAAA GCACCC AACA GGGTGC TTTTTAAGTTATATT TERM 780 564509 - 564496 - g 76 -6.7 -4.46926 | GATCTTATTATAAAA GTTCC AATG GGAAC AATAATAAGAGAAGA CLH_0565 564232 - 565518 + | Spo0B-associated GTP-binding protein CLH_0566 565540 - 565836 + | hypothetical protein TERM 781 565849 - 565874 + F 100 -9.2 -5.44721 | opp_overlap 565849 565854, overlap 565854 TAATTAGATAAAAAA TAAAACCCTT TGTTAT AAGGGTTTTA TTTTTTTGAAATCAT TERM 782 565874 - 565849 - f 100 -9.2 -5.42131 | opp_overlap 565849 565854, overlap 565854 TAATTAGATAAAAAA TAAAACCCTT TGTTAT AAGGGTTTTA TTTTTTTGAAATCAT TERM 783 565869 - 565854 - f 79 -4.7 -5.51612 | opp_overlap 565849 565854, overlap 565849 AGATAAAAAATAAAA CCCTT TGTTAT AAGGG TTTTATTTTTTTGAA TERM 784 565854 - 565869 + F 79 -4.7 -5.55855 | opp_overlap 565854 565849, overlap 565849 AGATAAAAAATAAAA CCCTT TGTTAT AAGGG TTTTATTTTTTTGAA TERM 785 565956 - 565976 + F 78 -6.9 -4.73635 | opp_overlap 565956, overlap 565951 TTACAATAAATAGAA GATCTGCAT CTC ATGTGGATC TTTTGTTAGCTTGTA TERM 786 566043 - 566006 - f 80 -6.8 -5.00136 | gap 1, opp_overlap 566010 566023 566032, overlap 566010 566035 AAATAAAATAGAAAA TAAATATATATTACATT TTTAT AATGTAATATATA-TTA TGAATTTATAATATA TERM 787 566040 - 566010 - f 100 -10.1 -4.93812 | opp_overlap 566010 566023 566032, overlap 566006 566035 AAAATAGAAAATAAA TATATATTACATT TTTAT AATGTAATATATA TTATGAATTTATAAT TERM 788 566010 - 566040 + F 89 -10.1 -3.50449 | opp_overlap 566010 566006 566035, overlap 566023 566032 AAAATAGAAAATAAA TATATATTACATT TTTAT AATGTAATATATA TTATGAATTTATAAT nadD 566217 - 566819 + | nicotinate (nicotinamide) nucleotide adenylyltransferase TERM 789 566966 - 566953 - g 71 -3.8 -5.09762 | opp_overlap 566953, overlap 566947 ATTTCAATAGAAAAA GCTG AAATAG CAGC TCTTGCTCATGATGT CLH_0568 566824 - 567399 + | hypothetical protein CLH_0569 567475 - 568749 + | membrane-bound protein LytR CLH_0570 568877 - 569773 + | pseudouridine synthase, RluA family TERM 790 569767 - 569809 + T 75 -6.4 -4.54681 | opp_overlap 569771 569773, overlap 569763 569773 569776 569779 ATTATTAGAAAAAAT AAAATAGAAGAAGATAGGAT TTA ATCCTATCTTCTTCTTCGTC TTCTTTTTAATTGAT TERM 791 569805 - 569771 - T 100 -16 -5.49579 | opp_overlap 569767 569763 569773 569776 569779, overlap 569773 TTAGAAAAAATAAAA TAGAAGAAGATAGGAT TTA ATCCTATCTTCTTCTT CGTCTTCTTTTTAAT TERM 792 569773 - 569803 + T 100 -18.6 -3.56246 | opp_overlap 569773 569771, overlap 569767 569763 569776 569779 AGAAAAAATAAAATA GAAGAAGATAGGAT TTA ATCCTATCTTCTTC TTCGTCTTCTTTTTA TERM 793 569803 - 569773 - T 100 -18.6 -4.34916 | opp_overlap 569767 569763 569773 569776 569779, overlap 569771 AGAAAAAATAAAATA GAAGAAGATAGGAT TTA ATCCTATCTTCTTC TTCGTCTTCTTTTTA TERM 794 569776 - 569800 + T 100 -14.5 -3.86781 | opp_overlap 569773 569771, overlap 569773 569767 569763 569779 AAAAATAAAATAGAA GAAGATAGGAT TTA ATCCTATCTTC TTCTTCGTCTTCTTT TERM 795 569779 - 569797 + T 95 -10.4 -4.03167 | opp_overlap 569773 569771, overlap 569776 569773 569767 569763 AATAAAATAGAAGAA GATAGGAT TTA ATCCTATC TTCTTCTTCGTCTTC CLH_0571 571109 - 569793 - | D-alanyl-D-alanine carboxypeptidase CLH_0572 571337 - 571951 + | ComE operon protein 1 TERM 796 572775 - 572761 - g 73 -4.4 -5.12971 | opp_overlap 572762 AAGATTTAATAAAAA TTATAT AGT ATATAA ATTAAGTACTAAAAC CLH_0573 572132 - 572836 + | putative lipoprotein CLH_0574 572862 - 573242 + | hypothetical protein rumA 573259 - 574611 + | 23S rRNA (uracil-5-)-methyltransferase RumA TERM 797 574806 - 574831 + F 100 -12 -5.58179 | opp_overlap 574804 TTTTTATAAGCTATT TGCCAACATC AATTAA GATGTTGGCA TTTTTTATTATAATA CLH_0576 575254 - 576267 + | putative iron compound ABC transporter, periplasmic iron compound-binding protein TERM 798 576311 - 576276 - f 74 -4.8 -5.10033 | opp_overlap 576273 576276 576281 576284, overlap 576281 576284 TCAATAGAAATAAAA TAAAAGGAGTGCCTAT GTAT ATAGGTACTTCTATTA TGCTTTTAATTATAC TERM 799 576276 - 576311 + F 80 -9.2 -3.20455 | opp_overlap 576276 576281 576284, overlap 576273 576281 576284 TCAATAGAAATAAAA TAAAAGGAGTGCCTAT GTAT ATAGGTACTTCTATTA TGCTTTTAATTATAC TERM 800 576306 - 576281 - f 77 -4.7 -5.3689 | opp_overlap 576276 576273 576281 576284, overlap 576276 576284 AGAAATAAAATAAAA GGAGTGCCTAT GTAT ATAGGTACTTC TATTATGCTTTTAAT TERM 801 576281 - 576306 + F 77 -9.1 -3.42359 | opp_overlap 576281 576276 576284, overlap 576276 576273 576284 AGAAATAAAATAAAA GGAGTGCCTAT GTAT ATAGGTACTTC TATTATGCTTTTAAT TERM 802 576284 - 576303 + F 70 -7.2 -3.82505 | opp_overlap 576281 576276 576284, overlap 576281 576276 576273 AATAAAATAAAAGGA GTGCCTAT GTAT ATAGGTAC TTCTATTATGCTTTT CLH_0577 576290 - 577321 + | HmuU protein CLH_0578 577321 - 578076 + | iron chelate uptake ABC transporter, FeCT family, ATP-binding protein TERM 803 578109 - 578139 + F 82 -5.4 -5.55698 | AATAAATAACTGTTA TATGCCCCAAACAA AAA TTTATAGGGGCATA TTTTTTTACGTTATA CLH_0579 578321 - 580357 + | penicillin-binding protein 3 TERM 804 580454 - 580488 + F 90 -6 -5.89921 | overlap 580445 ATGTTACAATAAGAA TCATACTGTATTTT AAAATAA AAAATGTAGTATGA TTTTTTTGTTATGGT TERM 805 580534 - 580556 + F 87 -9.9 -3.47709 | opp_overlap 580532 580534, overlap 580552 GTTGTGAAATAGATA GCTGGTAGC CAATT GTTACCAGC TTATACTGGTCTTAT CLH_0580 580673 - 582316 + | putative ggdef domain protein TERM 806 582406 - 582453 + F 100 -8.1 -5.60993 | opp_overlap 582408, overlap 582408 ACAATTATAACAAAA TGTGCTTTATAAGATAGGC AAGATAAAAA GTCTATTTTATAAAGCATA TTTTTTTATACAAGA TERM 807 582408 - 582451 + G 83 -8.5 -4.45201 | opp_overlap 582408, overlap 582406 AATTATAACAAAATG TGCTTTATAAGATAGGC AAGATAAAAA GTCTATTTTATAAAGCA TATTTTTTTATACAA CLH_0581 582407 - 582571 + | hypothetical protein CLH_0582 582614 - 584356 + | hypothetical sigma-54-dependent transcriptional regulator YgeV TERM 808 584380 - 584364 - f 71 -6.7 -4.12416 | opp_overlap 584354 584372, overlap 584354 AAGAATAAAATATAA TTTATCA TTA TGATAAA AAGTATTTTATTATG TERM 809 584446 - 584481 + F 100 -10.8 -5.90231 | opp_overlap 584444 584449 GTGTGTTACAGAATT TAACAGATACAATATA TATG TATATTGTATATGTTA TTTTTTTGTATTTCT TERM 810 584478 - 584449 - f 72 -8.1 -3.26449 | opp_overlap 584446, overlap 584444 TGTTACAGAATTTAA CAGATACAATATA TATG TATATTGTATATG TTATTTTTTTGTATT TERM 811 584496 - 584531 + F 77 -8.7 -3.39668 | opp_overlap 584514 ATTTTTTTGTATTTC TTATTATTTTGATAA AAATAA TTATCAAAATGATAA TTATGAGATTTACAA TERM 812 584534 - 584514 - f 88 -8.5 -4.84359 | opp_overlap 584496 TTATTTTGATAAAAA TAATTATCA AAA TGATAATTA TGAGATTTACAAATA TERM 813 584781 - 584769 - g 70 -6.3 -4.23528 | TAAGGTAAAAGCAAA TGCTT ATG AAGCA GATATGACAAAATTT CLH_0583 584737 - 585936 + | M20/DapE family protein YgeY ygeW 585987 - 587180 + | probable carbamoyltransferase YgeW TERM 814 587332 - 587344 + F 89 -9.1 -4.65263 | opp_overlap 587331 587330 TTAAACTAAAAAGCC GTGGC ATA GCCAC TTTGTTTTAAAGCAT TERM 815 587476 - 587459 - g 80 -6.3 -4.84359 | opp_overlap 587459 TGACTGCCATAAAAA CTACTGC CAAA GCAATAG TTGATTTAATTGAAG arcC 587380 - 588312 + | carbamate kinase TERM 816 589585 - 589569 - g 70 -5.2 -4.4518 | AATGAAAACTCAAAA GTACTA TTATT TAGTAC AGAAGGAGACACAGA dpaL 588441 - 589649 + | diaminopropionate ammonia-lyase CLH_0587 589677 - 591008 + | proteoglycan CLH_0588 591217 - 591366 + | hypothetical protein TERM 817 591387 - 591369 - f 75 -5.4 -5.07523 | CATATATAAATAAAA TACTACTT ATT AAGTAATA TAAAAATAGTAAATT CLH_0589 591444 - 592805 + | hydroxydechloroatrazine ethylaminohydrolase CLH_0590 592844 - 593932 + | dihydroorotate dehydrogenase family protein TERM 818 593922 - 593908 - f 71 -7.2 -3.93256 | overlap 593919 TAGATGTCCAAAGAA TGCATT ATC AATGCA ATATAAGTAGACGCA CLH_0591 594070 - 594447 + | putative endoribonuclease L-PSP CLH_0592 594489 - 595043 + | hypothetical protein TERM 819 595700 - 595713 + G 70 -6.7 -3.95653 | opp_overlap 595700 AATTATATAAGAAAA GGACT TACA AGTCC TTTATACCATTGTTT TERM 820 595713 - 595700 - g 83 -6.7 -4.86822 | opp_overlap 595700 AATTATATAAGAAAA GGACT TACA AGTCC TTTATACCATTGTTT hydA 595103 - 596494 + | dihydropyrimidinase TERM 821 596548 - 596606 + F 79 -10.1 -2.64962 | gap 1 GAGATAAATTATTAG GCACATGAAAGATAATAGTAAG-TTAAA GAAA TTAAGGCTTATTATTATCTTTTGTGTGC CTTACTTGATAATAT TERM 822 596860 - 596817 - f 75 -5.6 -5.0809 | opp_overlap 596808 596822, overlap 596808 596822 AATAAATTATAAAAA TATAATTATCAAAGTGATAA AGAA TTATCCTTTTGATAATTTTA ACATATAAATTATGA TERM 823 596822 - 596855 + F 77 -7.7 -4.1721 | opp_overlap 596817 596822 ATTATAAAAATATAA TTATCAAAGTGATAA AGAA TTATCCTTTTGATAA TTTTAACATATAAAT CLH_0594 597381 - 598778 + | xanthine permease TERM 824 600181 - 600166 - g 74 -6.2 -4.49353 | TTACAAGACAAGAAA GTATCA TGGT TGATAC CAAAAGACATGCTAT CLH_0595 598884 - 601445 + | selenium-dependent molybdenum hydroxylase 1 TERM 825 601494 - 601459 - T 100 -16.4 -4.42081 | opp_overlap 601454 601464 601488 601489, overlap 601477 601488 AATATAAAGCTAAAA TAAGAGGTTGCCATAA AATT TTAAGGCAACCTCTTA AAATATATAATTTAT TERM 826 601464 - 601489 + T 85 -10.5 -3.08934 | opp_overlap 601459 601477 601488, overlap 601454 601488 AAAGCTAAAATAAGA GGTTGCCATAA AATT TTAAGGCAACC TCTTAAAATATATAA CLH_0596 601994 - 601521 - | cytidine/deoxycytidylate deaminase family protein TERM 827 602209 - 602246 + H 81 -8.8 -3.93583 | opp_overlap 602200 602209 AAATAATTACACTAA TTTATCAAAACGATAA TATGTT TTATCATTTTGATAAA TTTATAAATAGCTTA TERM 828 602246 - 602209 - H 93 -11 -3.35778 | opp_overlap 602209, overlap 602200 AAATAATTACACTAA TTTATCAAAACGATAA TATGTT TTATCATTTTGATAAA TTTATAAATAGCTTA CLH_0597 602624 - 604915 + | 4-hydroxybenzoyl-CoA reductase subunit alpha TERM 829 605011 - 605001 - g 71 -4 -5.01497 | ATTATTAGATAAAAA TAAG GAA CTTA AGATAATAGCAGGTG TERM 830 605516 - 605503 - g 73 -5.3 -4.70583 | TTTAGTAATAGAAAA GCTAT GGAT ATAGC GATGGTCAGTGTAGC CLH_0598 604933 - 605805 + | xanthine dehydrogenase FAD-binding subunit CLH_0599 605807 - 606280 + | xanthine dehydrogenase family protein, iron-sulfur binding subunit TERM 831 606909 - 606937 + G 75 -7.5 -4.03978 | GGATCAATAATAGTT GGAGCTATAGTTG TAA TACTTATAGCTCC TTTATATGGAAAATT CLH_0600 606558 - 607943 + | xanthine permease TERM 832 608021 - 607993 - f 78 -7.7 -4.30933 | opp_overlap 608015 608015, overlap 607999 608015 TAGAAATTTAATAAA TATAAACTTCCAA AAA TTAAAAGTTTATA TTAAACTTGTCAGTT TERM 833 608061 - 608015 - f 95 -9.2 -4.77757 | opp_overlap 608015 608015 608023 608030, overlap 607993 TTCCAAAAATTAAAA GTTTATATTAAACTTGTC AGTTTATTTAA AACAAGTTTAATATAAAC TGACTTACATATAAA TERM 834 608030 - 608065 + F 75 -8.7 -3.12668 | gap 1, opp_overlap 608015, overlap 608023 608015 GTTTATATTAAACTT GTCAGTTTAT-TTAAA ACAAG TTTAATATAAACTGAC TTACATATAAAAATA TERM 835 608755 - 608769 + G 71 -7.2 -3.86346 | TGAGAATAATGCCAA TAAACC TAA GGTTTA TTTATCAGGAAGTAC CLH_0601 608177 - 609208 + | iron ABC transporter substrate-binding protein CLH_0602 609205 - 610194 + | iron chelate uptake ABC transporter, FeCT family, permease protein TERM 836 610590 - 610572 - g 89 -6.2 -5.45726 | overlap 610584 GATATTTTAAAAAAA TTAAATAT AGA ATATTTAA AAGATAAATATATAA CLH_0603 610191 - 610970 + | putative iron ABC transporter, ATP-binding protein CLH_0604 611043 - 611858 + | conserved hypothetical protein TIGR03172 CLH_0605 612002 - 612790 + | selenium-dependent molybdenum hydroxylase system protein, YqeB family CLH_0606 612887 - 613507 + | selenium metabolism protein YedF selD 613640 - 614677 + | selenide, water dikinase CLH_0608 614921 - 616072 + | 2-hydroxyacyl-CoA dehydratase beta-subunit hgdC 616118 - 616876 + | 2-hydroxyglutaryl-CoA dehydratase component A CLH_0610 616935 - 617534 + | molybdopterin-guanine dinucleotide biosynthesis protein A CLH_0611 617531 - 618595 + | putative xanthine dehydrogenase accessory factor TERM 837 618614 - 618646 + F 76 -4.2 -5.27476 | opp_overlap 618609, overlap 618609 AATATAAGAATAAAA CTCTAGCTAAGAAT AAAAA ATTCAAAGTTAGAG TTTTCTTTTATTAAA cbiQ 618846 - 619658 + | cobalt ABC transporter, permease protein CbiQ CLH_0613 619670 - 620503 + | cobalt import ATP-binding protein CbiO TERM 838 620832 - 620856 + F 73 -7.3 -4.12254 | opp_overlap 620831 620832 CTATATATGGATAAG TCTCTTTTAAT GTT ATTTAAAGAGA TTATTTATGATGCTA cbiM 620930 - 621676 + | cobalamin biosynthesis protein CbiM CLH_0615 621679 - 621999 + | cobalt/cobalamin transport protein CbiN TERM 839 622108 - 622138 + F 77 -6.4 -4.62471 | overlap 622098 TTTATTAGAGTTATC TACTATTTTTTATT ATT AATAAAGTATAGTA TTTTTAAAAATTAAA CLH_0616 622270 - 622383 + | hypothetical protein CLH_0617 622464 - 622625 + | hypothetical protein CLH_0618 622700 - 622834 + | hypothetical protein TERM 840 622861 - 622885 + T 76 -3 -5.96894 | gap 1, opp_overlap 622848, overlap 622853 TATTATATAACAAAA GAGTTAG-TAA AAAT TTATCTAGCTC TTTTTTTATTTAAAT CLH_0619 623533 - 622928 - | TetR-family transcriptional regulator TERM 841 623626 - 623668 + H 81 -10.3 -2.59881 | opp_overlap 623626, overlap 623625 GATTAGTTAATTAGA TGTTTTAAGTATACATAAT AGATA ATTATGTATATATAAAACA ATTCTAGGATAAATA TERM 842 623769 - 623758 - H 70 -3 -5.5762 | opp_overlap 623758, overlap 623751 ATTAAATAGAAAAAA TAAC GATC GTTA TTTTTTTTGAACTGT TERM 843 623758 - 623769 + H 73 -3 -5.79526 | opp_overlap 623751 623758 ATTAAATAGAAAAAA TAAC GATC GTTA TTTTTTTTGAACTGT CLH_0620 623802 - 624725 + | hypothetical protein TERM 844 624742 - 624782 + F 95 -12.1 -3.51232 | opp_overlap 624744, overlap 624738 624744 AATAAATTATTAAAA AAGAGCTTTCATAGAAGCT AAA AGTTTCTATGAAAACTCTA TTGATTTAAGGAGGA TERM 845 624744 - 624780 + F 100 -14.7 -3.33151 | opp_overlap 624744, overlap 624742 624738 TAAATTATTAAAAAA GAGCTTTCATAGAAGCT AAA AGTTTCTATGAAAACTC TATTGATTTAAGGAG TERM 846 624780 - 624744 - f 100 -14.7 -5.243 | opp_overlap 624744 624742 624738 TAAATTATTAAAAAA GAGCTTTCATAGAAGCT AAA AGTTTCTATGAAAACTC TATTGATTTAAGGAG CLH_0621 624804 - 626303 + | hypothetical protein CLH_0622 626306 - 627460 + | putative oxidoreductase CLH_0623 627582 - 628748 + | hypothetical protein CLH_0624 628951 - 630906 + | signal-transduction and transcriptional-control protein TERM 847 630919 - 630965 + F 80 -6.1 -5.09762 | opp_overlap 630936 630941 630945, overlap 630922 630935 TGAGACTAAAAATAG TTAGTGTATCAAAATGAGAAA ATAAA TGTATCATTTTGATGCACTTA TTTTTATATTAAAAT TERM 848 630922 - 630962 + F 83 -7.8 -4.63863 | opp_overlap 630936 630941 630945, overlap 630919 630935 GACTAAAAATAGTTA GTGTATCAAAATGAGAAA ATAAA TGTATCATTTTGATGCAC TTATTTTTATATTAA TERM 849 631012 - 630982 - f 70 -7.2 -3.77806 | opp_overlap 630981 630984, overlap 630980 TTTTATATTAAAATA TACTTAAAAATA AATTTAA TATTTTTAAGTA CTGTAATGCATGTAA CLH_0625 631160 - 632233 + | oxidoreductase, zinc-binding dehydrogenase family CLH_0626 632254 - 633141 + | conserved electron-transfer protein gltA 633144 - 634535 + | glutamate synthase (NADPH), homotetrameric TERM 850 634571 - 634601 + F 100 -10.6 -5.56264 | opp_overlap 634571 CACACACTCAAAAAA GGCTATTACTAATA AAT TTTTAGTAATGGCC TTTTTTATATTTAAA TERM 851 634601 - 634571 - f 95 -8.4 -5.14477 | opp_overlap 634571 CACACACTCAAAAAA GGCTATTACTAATA AAT TTTTAGTAATGGCC TTTTTTATATTTAAA TERM 852 635333 - 635317 - g 77 -9.5 -2.85732 | opp_overlap 635328, overlap 635316 635322 635323 ATAATGAATAAAGAG TCAAAGG AAG CCTTTGA TAAAGCTTCATCATC CLH_0628 634873 - 636582 + | methyl-accepting chemotaxis protein CLH_0629 636788 - 637474 + | peptidyl-prolyl cis-trans isomerase, cyclophilin-type TERM 853 637490 - 637523 + F 80 -6.2 -5.20154 | opp_overlap 637490 AAGATTATTTATTAA TATATCATCATTGC TTTTAT GTTATGATGATATA TTTTTTGCGTTGTAT CLH_0630 637556 - 638263 + | hypothetical protein TERM 854 638422 - 638368 - f 100 -15.8 -3.85389 | gap 1, opp_overlap 638369 638373 638378 638378, overlap 638378 TTTTAATAATGGAAA TGTAATTAAATTCAATTAAATTACT TTTAAT AG-AATTTAATTGAATTTAATTACA GCTACCAATAAATTG TERM 855 638373 - 638407 + F 70 -7.5 -3.33399 | opp_overlap 638368 638378, overlap 638369 638378 638378 ATAATGGAAATGTAA TTAAATTCAATTAAA TTACT TTTAATAGAATTTAA TTGAATTTAATTACA TERM 856 638926 - 638913 - g 71 -2.4 -5.42862 | opp_overlap 638913 ATAGCTGTAAAAAAA GCTT TAAGTG AAGC ATTTTTAAAGTATAG CLH_0631 638577 - 639092 + | GnaT-family acetyltransferase TERM 857 639196 - 639210 + F 78 -5.8 -5.26918 | opp_overlap 639196 639194 TATTAGAGATAAAGA TCATTT TAT AAATGA TTTTTTATAAAGTAT CLH_0632 639295 - 640161 + | oxidoreductase, short chain dehydrogenase/reductase family TERM 858 640175 - 640225 + F 100 -14.5 -3.19657 | opp_overlap 640181 640184, overlap 640181 AATATAATATTGATT CTAAAATAAGACTTAAATCTTGC TCTAT GCAAAATTTAAGTCTTATTTTAA TTGAGTGTATATTGT TERM 859 640181 - 640219 + F 100 -13.5 -4.44548 | opp_overlap 640181 640184, overlap 640175 ATATTGATTCTAAAA TAAGACTTAAATCTTGC TCTAT GCAAAATTTAAGTCTTA TTTTAATTGAGTGTA TERM 860 640219 - 640181 - f 100 -15.7 -4.15006 | opp_overlap 640181 640175, overlap 640184 ATATTGATTCTAAAA TAAGACTTAAATCTTGC TCTAT GCAAAATTTAAGTCTTA TTTTAATTGAGTGTA TERM 861 640216 - 640184 - f 100 -13 -4.19746 | opp_overlap 640181 640175, overlap 640181 TTGATTCTAAAATAA GACTTAAATCTTGC TCTAT GCAAAATTTAAGTC TTATTTTAATTGAGT CLH_0633 640463 - 641188 + | putative arylesterase CLH_0634 641491 - 642477 + | 3-oxoacyl-[acyl-carrier-protein] synthase III TERM 862 642684 - 642661 - g 79 -9.7 -3.17739 | opp_overlap 642660, overlap 642659 AAGAAATAGAAAGCA TAGCTCTTG GAGGCT CAAGAGCTA CTAAATTAAATGATA CLH_0635 642603 - 643391 + | nucleotidyltransferase domain protein TERM 863 643453 - 643427 - T 100 -8.1 -5.96894 | opp_overlap 643427 AGTCAAATAAAAAAA TATCCTTAGGA TAAAT TCCTAGGGATA TTTTTTTTATTTGTT TERM 864 643427 - 643453 + T 100 -10.3 -6.32017 | opp_overlap 643427 AGTCAAATAAAAAAA TATCCTTAGGA TAAAT TCCTAGGGATA TTTTTTTTATTTGTT CLH_0636 643642 - 643460 - | hypothetical protein CLH_0637 644296 - 643754 - | hypothetical protein CLH_0638 644570 - 644947 + | putative endoribonuclease L-PSP TERM 865 644998 - 644958 - T 100 -13.6 -4.39989 | opp_overlap 644958 ATTAAATTAGGAAAA GACTATGCCTATTAAGAA TAAAT TTCTAAATAGACATAGTC TTTAATTAATTTAAA TERM 866 644958 - 644998 + T 100 -11.4 -4.04394 | opp_overlap 644958 ATTAAATTAGGAAAA GACTATGCCTATTAAGAA TAAAT TTCTAAATAGACATAGTC TTTAATTAATTTAAA CLH_0639 645777 - 645022 - | putative HTH-type transcriptional regulator YciT TERM 867 645935 - 645922 - R 82 -5.3 -5.52096 | opp_overlap 645922 645931, overlap 645915 AAAGTCAATAAAAAA GTTTC ATAT GAAAC TTTTTTTGTTTCTAG TERM 868 645922 - 645935 + r 95 -5.3 -6.02919 | opp_overlap 645922 645915, overlap 645931 AAAGTCAATAAAAAA GTTTC ATAT GAAAC TTTTTTTGTTTCTAG TERM 869 646206 - 646173 - R 95 -12.7 -3.15592 | opp_overlap 646178, overlap 646178 AAGTTTTACTAAAAT TAAAATGAGCCTTAA CATT TTAAGGCTCATTTTG GCGTTCCATTATCTT TERM 870 646178 - 646201 + r 100 -12.6 -4.20354 | opp_overlap 646173 646178 TTACTAAAATTAAAA TGAGCCTTAA CATT TTAAGGCTCA TTTTGGCGTTCCATT TERM 871 646201 - 646178 - R 100 -12.6 -4.70319 | opp_overlap 646178, overlap 646173 TTACTAAAATTAAAA TGAGCCTTAA CATT TTAAGGCTCA TTTTGGCGTTCCATT CLH_0640 646664 - 646215 - | hypothetical protein CLH_0641 646842 - 647141 + | hypothetical protein TERM 872 647216 - 647167 - T 100 -14.1 -3.43414 | opp_overlap 647180, overlap 647169 647170 647180 TATAAATAAATTTAA TAGTAAATAAAAATAGTTGAGAT TAAA ATCTCAACTATTTTTATTTAATG CAATTATTCTAAATT TERM 873 647214 - 647169 - T 100 -16.7 -3.26841 | opp_overlap 647180, overlap 647167 647170 647180 TAAATAAATTTAATA GTAAATAAAAATAGTTGAGAT TAAA ATCTCAACTATTTTTATTTAA TGCAATTATTCTAAA TERM 874 647213 - 647170 - T 100 -20.2 -2.5502 | opp_overlap 647180, overlap 647169 647167 647180 AAATAAATTTAATAG TAAATAAAAATAGTTGAGAT TAAA ATCTCAACTATTTTTATTTA ATGCAATTATTCTAA TERM 875 647180 - 647203 + T 100 -11.2 -5.33405 | opp_overlap 647170 647169 647167 647180 AATAGTAAATAAAAA TAGTTGAGAT TAAA ATCTCAACTA TTTTTATTTAATGCA TERM 876 647203 - 647180 - T 100 -11.2 -5.37171 | opp_overlap 647180, overlap 647170 647169 647167 AATAGTAAATAAAAA TAGTTGAGAT TAAA ATCTCAACTA TTTTTATTTAATGCA TERM 877 647226 - 647238 + T 70 -3.5 -5.34555 | TTAATGCAATTATTC TAAAT TTA ATTTA TTTTTTATGATGTAA CLH_0642 648032 - 647220 - | ABC transporter permease protein TERM 878 647686 - 647672 - G 71 -7.2 -3.79505 | AAATTAACACTGAAA GTATTG CAA CAATAC CACTAACTATAGTCC CLH_0643 648730 - 648026 - | ABC transporter, ATP-binding protein CLH_0644 649098 - 648730 - | transcriptional regulator, GntR family TERM 879 648927 - 648939 + g 70 -4.8 -4.8066 | AGTTTTTTCGTTCAA GCTC AGTAA GAGC TTTTTGCATTGTATT TERM 880 649110 - 649149 + H 74 -8.9 -3.00544 | opp_overlap 649141 CCATATTTTCAACTC CTTGTACTATTGTATTA ATAACG TAATACAATAGTACAGC TATATACTAATTTTG TERM 881 649249 - 649231 - H 77 -4.7 -5.27709 | TTATAAAAAAAGAAA TGATTAA ATATA TTAATCA CACTTATAAGTATAG TERM 882 649676 - 649686 + G 71 -4 -5.00642 | GGGGAACAGGTTTTG CAAT AAT ATTG TTTTTATCTACATTA CLH_0645 649405 - 650865 + | putative methyl-accepting chemotaxis sensory transducer TERM 883 650941 - 650910 - f 100 -16.2 -5.30348 | opp_overlap 650910 AGTGAATAATAAAAA TAATTAAGGAGCAA TTAA TTGCTCCTTAATTA TTTTTATAGATATTA TERM 884 650910 - 650941 + F 100 -16.2 -4.91459 | opp_overlap 650910 AGTGAATAATAAAAA TAATTAAGGAGCAA TTAA TTGCTCCTTAATTA TTTTTATAGATATTA CLH_0646 651168 - 652352 + | putative D-alanine transferase CLH_0647 652321 - 652461 + | hypothetical protein TERM 885 652690 - 652658 - g 100 -10.1 -5.18866 | CGGAAATAAAGAAAA TTTAATGATGGCATC TAT GATATCATCATTAAA ATGTGGGAGAGCATA CLH_0648 652479 - 653993 + | putative D-alanine-activating enzyme CLH_0649 653993 - 655147 + | protein DltB dltC 655225 - 655452 + | D-alanyl carrier protein TERM 886 655497 - 655465 - T 100 -10.9 -5.04222 | opp_overlap 655459 655465 TAAGGAAATTAAAAA GTTCTTTTTATAATT TAA AATTATAAAGAGAAC TTTTTTTGTTTTTTA TERM 887 655465 - 655497 + T 100 -13.1 -6.28401 | opp_overlap 655465, overlap 655459 TAAGGAAATTAAAAA GTTCTTTTTATAATT TAA AATTATAAAGAGAAC TTTTTTTGTTTTTTA TERM 888 655996 - 656017 + T 100 -10.3 -5.42131 | opp_overlap 655996 CTCCACCAATGAAAA CACATTGAT AATT ATCAATGTG TTTTTTGTGTGCTTG TERM 889 656017 - 655996 - T 100 -10.3 -4.45544 | opp_overlap 655996 CTCCACCAATGAAAA CACATTGAT AATT ATCAATGTG TTTTTTGTGTGCTTG TERM 890 657253 - 657280 + T 86 -5.8 -5.64006 | opp_overlap 657234 657253 AACTATCAAAATTAA TATATTATCTTA AATT TATGATAATATA TTTTTTTAGTTAAGT TERM 891 657483 - 657448 - T 100 -13 -4.34811 | gap 1, overlap 657439 AATAAATATTTAAAA TAGGTGAATTATAATTG TTA CAATT-TAATTCACCTA CGATATAAAAATTAA CLH_0654 658251 - 657550 - | hypothetical protein CLH_0655 658647 - 660473 + | putative glycerophosphoryl diester phosphodiesterase TERM 892 660601 - 660582 - T 90 -6.5 -5.67063 | opp_overlap 660582 TCTACCATAAAAAAA CTGTACA TTTATT TGTACAG TTTTTTTATTTTATA TERM 893 660582 - 660601 + T 100 -6.5 -6.14618 | opp_overlap 660582 TCTACCATAAAAAAA CTGTACA TTTATT TGTACAG TTTTTTTATTTTATA CLH_0656 661688 - 660681 - | putative oxidoreductase YgjR TERM 894 660903 - 660918 + g 70 -4.8 -4.79683 | ATTATATATTAATTT TACATT TTTG AATGTA TTTATTTTATCAATT TERM 895 661402 - 661412 + g 84 -4 -5.79595 | GCAAATGCCTTCTCA CATA AAA TATG TTTTTTATTTTCAAG CLH_0657 662033 - 663244 + | FliB family protein TERM 896 663509 - 663530 + T 77 -7.3 -4.49756 | opp_overlap 663509, overlap 663504 ATTCATATTAAAAAA TCCACGACA GAAA TATCGTGGA TTTTAATATTTAAAA TERM 897 663530 - 663509 - T 100 -9.5 -5.22312 | opp_overlap 663509 663504 ATTCATATTAAAAAA TCCACGACA GAAA TATCGTGGA TTTTAATATTTAAAA CLH_0658 664125 - 663577 - | hypothetical protein TERM 898 664163 - 664150 - H 70 -2.5 -5.50499 | opp_overlap 664150 664151, overlap 664151 CTACATTGAAAAAAA TTATA GGAA TATAA TATTTCCTATATATA TERM 899 665486 - 665505 + G 75 -7.2 -4.12188 | opp_overlap 665486 TATGCTGATGATAAA GTAACGGT AGAT ACTGTTAC TTTTGGGGATGATGC TERM 900 665790 - 665772 - g 75 -5.4 -4.89009 | ATACTCAAGGAAAAA TTGATTCT ACA AAAATCAA TGGTGAAGATTTTAA CLH_0659 664334 - 665956 + | putative lipoprotein TERM 901 666171 - 666158 - f 70 -3.9 -5.25772 | AAATTATAACAAAAA CTAAT CTGA ATTAG AATAGATAGTAGGAG asrA 666195 - 667238 + | sulfite reductase, subunit A asrB 667239 - 668054 + | sulfite reductase, subunit B asrC 668068 - 669105 + | sulfite reductase, subunit C TERM 902 669103 - 669124 + T 73 -7.5 -3.77206 | opp_overlap 669103 669102 669106 669117, overlap 669106 669117 CATATGAGAAAATAT TAATATGAT AAAA ATCATATTA TTTCATAAAATTATA TERM 903 669142 - 669117 - T 72 -4.9 -4.98436 | opp_overlap 669106 669103 669117, overlap 669106 669103 669102 669125 TTAATATGATAAAAA TCATATTATTT CATA AAATTATATGA TTCAATTGTATGAAA TERM 904 669238 - 669211 - T 71 -7.1 -3.88932 | opp_overlap 669212, overlap 669209 669205 669212 ATAAAAAGATAAATA GTCCTTGAACT TTGTGT AGTTCAAGGAT TTTTAAAAATAGATT TERM 905 669237 - 669212 - T 82 -10.6 -2.90919 | opp_overlap 669212, overlap 669211 669209 669205 TAAAAAGATAAATAG TCCTTGAACT TTGTGT AGTTCAAGGA TTTTTAAAAATAGAT TERM 906 669212 - 669237 + T 100 -10.6 -4.60041 | opp_overlap 669212 669211 669209 669205 TAAAAAGATAAATAG TCCTTGAACT TTGTGT AGTTCAAGGA TTTTTAAAAATAGAT CLH_0663 669936 - 669259 - | CRP CLH_0664 670055 - 671248 + | probable transporter TERM 907 671265 - 671304 + T 100 -7.5 -5.8096 | opp_overlap 671265 TAATTCAACAAAAAA GAAGTTTATAATTATTA AATGTA TTGTAATTATAAACTTC TTTTTATTTTTTATA TERM 908 671304 - 671265 - T 82 -5.4 -5.5074 | opp_overlap 671265 TAATTCAACAAAAAA GAAGTTTATAATTA TTAAATGTATTG TAATTATAAACTTC TTTTTATTTTTTATA CLH_0665 672836 - 671535 - | sodium:dicarboxylate symporter family protein CLH_0666 673915 - 673028 - | LysR-family transcriptional regulator aroD 674102 - 674866 + | 3-dehydroquinate dehydratase, type I aroE 675002 - 675871 + | shikimate 5-dehydrogenase CLH_0669 675895 - 677118 + | inner membrane transport protein YdiN TERM 909 677267 - 677301 + F 72 -8.8 -2.60211 | opp_overlap 677269, overlap 677266 GTAAATATTATAAAA AAGATGTGTATTAATA ACT TATTAATACACATCAA ACTTTTTAAGGGACT TERM 910 677299 - 677269 - f 100 -15.8 -5.38321 | opp_overlap 677267 677266 AAATATTATAAAAAA GATGTGTATTAATA ACT TATTAATACACATC AAACTTTTTAAGGGA CLH_0670 677359 - 679347 + | NADH oxidase TERM 911 679438 - 679469 + F 100 -11.1 -5.00642 | overlap 679430 AAATAATGCTTTTTA GGCCTTAGTAATT AAGAAG AATTACTAAGGTC TTTTTATATAAATTA CLH_0671 679612 - 680037 + | flavodoxin CLH_0672 680048 - 680701 + | hypothetical protein TERM 912 680833 - 680789 - T 75 -9.6 -2.66034 | opp_overlap 680803, overlap 680803 ATAAATTTTACACTA TCAATTAAAAAAAACGTGAC ATAAA GTCACGTTTTTTTTATGTAA AGATAATATTCAATA TERM 913 680819 - 680803 - T 100 -8 -5.96521 | opp_overlap 680803, overlap 680789 ATCAATTAAAAAAAA CGTGAC ATAAA GTCACG TTTTTTTTATGTAAA TERM 914 680803 - 680819 + T 100 -8 -6.02914 | opp_overlap 680803 680789 ATCAATTAAAAAAAA CGTGAC ATAAA GTCACG TTTTTTTTATGTAAA CLH_0673 681383 - 680877 - | hypothetical protein CLH_0674 681856 - 682758 + | HD hydrolase superfamily protein CLH_0675 682779 - 683375 + | hypothetical protein CLH_0676 683601 - 684434 + | AP endonuclease, family 2 TERM 915 684441 - 684460 + F 91 -7.2 -5.61881 | opp_overlap 684445 AAGAAATAATTTTAA GGGATTCT TATT AGAATCTC TTTTTATTTTTAAGG TERM 916 685353 - 685341 - g 72 -6.3 -4.38774 | AAGAGTATATGAAAA TACAG AAG CTGTA AAGGTAATTTATAAT CLH_0677 684727 - 685944 + | putative oxidoreductase TERM 917 685970 - 686007 + F 95 -11.1 -3.63251 | gap 1, opp_overlap 685970 685973, overlap 685973 686005 686005 ATTGTTATTTAAGAA TAAGCTATATAATGAAAT TAA ATTT-ATTATATAGCTTA TTATAATTTAATAAT TERM 918 686007 - 685970 - f 95 -11.1 -3.67775 | gap 1, opp_overlap 685970 685973 686005 686005, overlap 685973 ATTGTTATTTAAGAA TAAGCTATATAATGAAAT TAA ATTT-ATTATATAGCTTA TTATAATTTAATAAT TERM 919 685973 - 686004 + F 78 -8.4 -3.93819 | gap 1, opp_overlap 685970 685973, overlap 685970 GTTATTTAAGAATAA GCTATATAATGAAAT TAA ATTT-ATTATATAGC TTATTATAATTTAAT TERM 920 686004 - 685973 - f 78 -8.4 -3.97307 | gap 1, opp_overlap 685973 685970, overlap 685970 GTTATTTAAGAATAA GCTATATAATGAAAT TAA ATTT-ATTATATAGC TTATTATAATTTAAT CLH_0678 686320 - 687558 + | ErfK/YbiS/YcfS/YnhG family TERM 921 687573 - 687601 + F 100 -8.3 -5.73978 | opp_overlap 687567 687573 AATATAGTATAGAAA GTCTAATGTAG AATAAAA CTACATTAGGC TTTTTTGTTTATCCT TERM 922 687833 - 687775 - f 95 -10.2 -4.24606 | gap 3, opp_overlap 687790 687792 687792, overlap 687776 687778 687780 AATTGACATTGAAAA CGATATGGCATATTATATTGGTATAGACC AATT GGTATATACCAATATAATATGCCA-A--G GTGGGGGAGATAAAA TERM 923 687834 - 687776 - f 95 -12.9 -3.1404 | gap 1, opp_overlap 687790 687792 687792, overlap 687775 687778 687780 ATTGACATTGAAAAC GATATGGCATATTATATTGGTATAGACC AATT GGTATATACCAATATAATATGCCA-AGG TGGGGGAGATAAAAT TERM 924 687832 - 687778 - f 100 -19.9 -3.12666 | gap 1, opp_overlap 687790 687792 687792, overlap 687775 687776 687780 TGACATTGAAAACGA TATGGCATATTATATTGGTATAGACC AATT GGTATATACCAATATAATATGCCA-A GGTGGGGGAGATAAA TERM 925 687831 - 687780 - f 100 -25 -3.11683 | opp_overlap 687790 687792 687792, overlap 687778 687775 687776 ACATTGAAAACGATA TGGCATATTATATTGGTATAGACC AATT GGTATATACCAATATAATATGCCA AGGTGGGGGAGATAA TERM 926 687790 - 687821 + F 86 -11.8 -2.62396 | opp_overlap 687780 687778 687775 687776, overlap 687792 687792 CGATATGGCATATTA TATTGGTATAGACC AATT GGTATATACCAATA TAATATGCCAAGGTG TERM 927 687792 - 687819 + F 80 -10 -2.85351 | opp_overlap 687780 687778 687775 687776, overlap 687790 687792 ATATGGCATATTATA TTGGTATAGACC AATT GGTATATACCAA TATAATATGCCAAGG CLH_0679 687849 - 688586 + | GntR-family transcriptional regulator nagA 688610 - 689743 + | N-acetylglucosamine-6-phosphate deacetylase nagB 689854 - 690603 + | glucosamine-6-phosphate isomerase nagE 690650 - 692077 + | pts system, N-acetylglucosamine-specific iibc component TERM 928 692137 - 692159 + F 71 -7 -3.89435 | opp_overlap 692134 692137 AAAAGTATATAATAC GGAGTCGT AAGATAC ACGGCTCC TTTAAATTATTTGAG CLH_0683 692185 - 692859 + | copper homeostasis protein CutC CLH_0684 693192 - 693761 + | BioY family protein TERM 929 694498 - 694480 - g 70 -3.2 -5.28166 | GAAAATCAAGAAAAA TTATCTTA TGA TGAGATAA CAAAAACATTTGCGC bioB 693745 - 694701 + | biotin synthase bioD 694704 - 695387 + | dethiobiotin synthase CLH_0687 696413 - 695586 - | multidrug-efflux transporter 2 regulator TERM 930 696701 - 696688 - H 70 -3.9 -5.14985 | TTAAATATAGAAAAA TTAGT ACAA ACTAA TTAAGAACAATTTAA TERM 931 697533 - 697547 + G 91 -7.2 -5.32944 | overlap 697525 TCTTATTGCTAGATG TAGCTA TAA TAGCTA TTTTTTGGTTATCAA CLH_0688 696788 - 698515 + | ABC transporter, ATP-binding/permease protein CLH_0689 698515 - 700296 + | lipid A export ATP-binding/permease protein MsbA CLH_0690 700360 - 700932 + | hypothetical protein TERM 932 701031 - 701072 + T 100 -9.7 -5.3104 | opp_overlap 701033, overlap 701033 TCCCACTTTCTATTA AAGTATCAAATAGCTGTTT CTAT ATATAGCTATTTGATACTA TTTTATTTTTAATAC TERM 933 701070 - 701033 - T 90 -10.1 -3.73224 | opp_overlap 701033 701031 CCACTTTCTATTAAA GTATCAAATAGCTGTTT CTAT ATATAGCTATTTGATAC TATTTTATTTTTAAT TERM 934 701033 - 701070 + T 100 -12.3 -4.26857 | opp_overlap 701033, overlap 701031 CCACTTTCTATTAAA GTATCAAATAGCTGTTT CTAT ATATAGCTATTTGATAC TATTTTATTTTTAAT ilvN 701363 - 701070 - | acetolactate synthase, small subunit ilvB 703035 - 701356 - | acetolactate synthase, large subunit, biosynthetic type TERM 935 701735 - 701757 + g 100 -10.8 -4.51743 | opp_overlap 701741, overlap 701741 ATTGAACCATCTCCA GAAAAACAAA TAA TTTGTTTTTC TTTATTTGCTAATGC TERM 936 701741 - 701751 + g 76 -4 -5.5454 | opp_overlap 701741, overlap 701735 CCATCTCCAGAAAAA CAAA TAA TTTG TTTTTCTTTATTTGC TERM 937 703110 - 703083 - H 84 -4.9 -5.77988 | AGATATATAAAAAAA TCTTCATCCAA ATAAAA TAGGACGAAGA GAAGCACGTGGAGAT CLH_0693 703579 - 704070 + | transcriptional regulator, CarD family CLH_0694 704272 - 704427 + | hypothetical protein TERM 938 704479 - 704442 - T 100 -20.3 -3.06696 | opp_overlap 704442, overlap 704445 GTTTTGTTTAATATA GAAGTGCTTTTAGTAAA GTAA TTTACTAAAAGCACTTC TTTTTTTGTTACTCT TERM 939 704442 - 704479 + T 100 -20.3 -5.85737 | opp_overlap 704442 704445 GTTTTGTTTAATATA GAAGTGCTTTTAGTAAA GTAA TTTACTAAAAGCACTTC TTTTTTTGTTACTCT TERM 940 704476 - 704445 - T 100 -16.2 -3.68024 | opp_overlap 704442, overlap 704442 TTGTTTAATATAGAA GTGCTTTTAGTAAA GTAA TTTACTAAAAGCAC TTCTTTTTTTGTTAC TERM 941 704484 - 704526 + T 100 -13.8 -3.98952 | overlap 704486 AAAAGCACTTCTTTT TTTGTTACTCTGAAGTTATT AAA AATAACTTCAGAGTAAAATA TTTAACTTTATTTTA TERM 942 704486 - 704524 + T 100 -16.4 -3.5553 | overlap 704484 AAGCACTTCTTTTTT TGTTACTCTGAAGTTATT AAA AATAACTTCAGAGTAAAA TATTTAACTTTATTT CLH_0695 705703 - 704534 - | surface protein PspC CLH_0696 711381 - 705721 - | fibronectin type III domain protein TERM 943 711481 - 711469 - H 79 -4.9 -5.58209 | GTAAATGCAAAAAAA TAACA AAA TGTTA AAAGAAAAGGAAAAC CLH_0697 711798 - 713255 + | putative methyl-accepting chemotaxis sensory transducer TERM 944 715234 - 715218 - g 73 -5.2 -4.71234 | opp_overlap 715217 AAATGGAACAGAAAA TCCTAA TAAGG TTAGGA ATATAATAATACACT CLH_0698 713716 - 715371 + | hypothetical protein TERM 945 715858 - 715886 + F 100 -11 -4.96848 | opp_overlap 715860, overlap 715860 GTGGTATCGCGATTT AACCTCGTCCCT TTATT AGGGACGGGGTA TTTTTATATGCAAAA TERM 946 715884 - 715860 - f 87 -11.4 -3.06183 | opp_overlap 715858 715860 GGTATCGCGATTTAA CCTCGTCCCT TTATT AGGGACGGGG TATTTTTATATGCAA TERM 947 715860 - 715884 + F 100 -13.6 -4.11141 | opp_overlap 715860, overlap 715858 GGTATCGCGATTTAA CCTCGTCCCT TTATT AGGGACGGGG TATTTTTATATGCAA brnQ 715983 - 717323 + | branched-chain amino acid transport system II carrier protein TERM 948 717482 - 717503 + F 75 -3.8 -5.61881 | opp_overlap 717476 717473 TAAAATTTAGAAAAA CATACATT TAATAT AATGTGTG TTTTTCTTTTTAGAA TERM 949 717772 - 717758 - g 78 -7.2 -4.57837 | overlap 717771 ATATTGTTTTAAAAA GGTTAT CTA ATAACC AAGTATTTGGAGAAG CLH_0700 717532 - 718212 + | camp-binding domain TERM 950 718398 - 718343 - T 72 -8 -3.64984 | opp_overlap 718347 718352, overlap 718352 ATAGTTGTTAAAATA TAAATAAAATGAGTTGTTCAAAGAAT TATA ATCTTTTGAATAACTCATTTCCTTTA TATATTTTAAAGAAT TERM 951 718352 - 718389 + T 84 -8.7 -4.20552 | opp_overlap 718343 718352, overlap 718347 AAAATATAAATAAAA TGAGTTGTTCAAAGAAT TATA ATCTTTTGAATAACTCA TTTCCTTTATATATT TERM 952 718389 - 718352 - T 83 -6.5 -5.15682 | opp_overlap 718352 718347, overlap 718343 AAAATATAAATAAAA TGAGTTGTTCAAAGAAT TATA ATCTTTTGAATAACTCA TTTCCTTTATATATT CLH_0701 719210 - 718431 - | deoxyribose operon repressor deoC 719505 - 720170 + | deoxyribose-phosphate aldolase CLH_0703 720480 - 721781 + | pyrimidine-nucleoside phosphorylase TERM 953 721916 - 721874 - f 77 -6.6 -4.66625 | opp_overlap 721876, overlap 721876 721879 ATATATATAAATAAA GGTAAGAGATTTTAATTATT TTT AATAATTGAAATCTCTTATT TGTTTGATAAATTTT TERM 954 721914 - 721876 - f 91 -13.6 -2.61925 | opp_overlap 721876, overlap 721874 721879 ATATATAAATAAAGG TAAGAGATTTTAATTATT TTT AATAATTGAAATCTCTTA TTTGTTTGATAAATT TERM 955 721876 - 721914 + F 100 -15.8 -4.5123 | opp_overlap 721876 721874 721879 ATATATAAATAAAGG TAAGAGATTTTAATTATT TTT AATAATTGAAATCTCTTA TTTGTTTGATAAATT TERM 956 721911 - 721879 - f 93 -10.9 -3.43414 | opp_overlap 721876, overlap 721876 721874 TATAAATAAAGGTAA GAGATTTTAATTATT TTT AATAATTGAAATCTC TTATTTGTTTGATAA hcp 722208 - 723851 + | hydroxylamine reductase TERM 957 723865 - 723901 + F 81 -5.5 -5.34381 | gap 1 AATATAATTTGTTAA GAGTAGTTA-TATAGA TATAAT TCTATAATAATTACTC TTTTTATTTAAATTT CLH_0705 723992 - 724771 + | hypothetical protein CLH_0706 724975 - 725658 + | hypothetical protein TERM 958 725722 - 725697 - f 100 -13.5 -5.37043 | opp_overlap 725697 ATTTTATAGAAAAAA GGTGGATTTAT TTAT ATAAATCCACC TTTTTTTATTTATAA TERM 959 725697 - 725722 + F 100 -13.5 -6.02919 | opp_overlap 725697 ATTTTATAGAAAAAA GGTGGATTTAT TTAT ATAAATCCACC TTTTTTTATTTATAA TERM 960 725862 - 725836 - f 89 -9 -4.67904 | opp_overlap 725830 725839 725842 TATCAATGCTAAAAA TCACAATTTTTA TTG TAAAAATTGTAA ATTAATAGTATAATG TERM 961 726197 - 726219 + G 78 -7.9 -4.431 | opp_overlap 726197 GCTGGTATTATATTA TTGAGTTTA AATTG TAAACTCAA TTTTATAAGTAACTG CLH_0707 725912 - 726472 + | accessory gene regulator B superfamily CLH_0708 726518 - 726646 + | hypothetical protein TERM 962 726940 - 726951 + G 77 -3 -5.63504 | opp_overlap 726940 TTCTTTGGTAGCATA TACA ATAA TGTA TTTTTTTATAGCATT TERM 963 727771 - 727759 - g 84 -3.5 -5.83226 | opp_overlap 727759 AATTGAAGAAAAAAA TATTT GTA AAATA TTTGAAGCAGGATTT CLH_0709 726674 - 727930 + | putative sensor histidine kinase TERM 964 727984 - 727956 - f 100 -14.9 -5.25893 | opp_overlap 727956 727960 ATACATATTAAAAAA TAAAGTGTTGATA TTA TATCAACACTTTA TTATTAGGTAAAATA TERM 965 727956 - 727984 + F 100 -14.9 -3.68073 | opp_overlap 727956, overlap 727960 ATACATATTAAAAAA TAAAGTGTTGATA TTA TATCAACACTTTA TTATTAGGTAAAATA TERM 966 727960 - 727980 + F 100 -11.3 -4.46854 | opp_overlap 727956, overlap 727956 ATATTAAAAAATAAA GTGTTGATA TTA TATCAACAC TTTATTATTAGGTAA TERM 967 728594 - 728572 - g 89 -7.9 -5.09259 | opp_overlap 728575 TAGTGCAAAATAAAA TAATGGATT TTGAT AATCCATTA TTAAAGAATATTATG TERM 968 728612 - 728627 + G 79 -3.4 -5.56673 | AAAGAATATTATGAT TATAAA CTTA TTTATA TTTTTTATTATAACT CLH_0710 728034 - 729263 + | two-component sensor histidine kinase CLH_0711 729423 - 729307 - | hypothetical protein TERM 969 729377 - 729338 - G 95 -8.3 -5.51612 | opp_overlap 729339 729344 729348 729373, overlap 729339 ATAGAAAAAATAAAA CTAAAATAAATAATAGA ATATAA TCTATTATTTATTTTAT TATATAAATTAAGTA TERM 970 729376 - 729339 - G 95 -11.8 -3.87307 | opp_overlap 729339 729344 729348 729373, overlap 729338 TAGAAAAAATAAAAC TAAAATAAATAATAGA ATATAA TCTATTATTTATTTTA TTATATAAATTAAGT TERM 971 729339 - 729376 + g 95 -11.8 -3.55368 | opp_overlap 729338 729339, overlap 729344 729348 729373 TAGAAAAAATAAAAC TAAAATAAATAATAGA ATATAA TCTATTATTTATTTTA TTATATAAATTAAGT TERM 972 729344 - 729371 + g 85 -7.3 -4.84914 | opp_overlap 729339 729338, overlap 729339 729348 AAAATAAAACTAAAA TAAATAATAGA ATATAA TCTATTATTTA TTTTATTATATAAAT CLH_0712 729458 - 730420 + | hypothetical protein TERM 973 730482 - 730468 - g 78 -4.4 -5.42259 | GCAGTGGGAAAAAAA TTTTAT GCA ATAAAA GAAGGTTTTGATTTT TERM 974 730653 - 730635 - g 75 -3.3 -5.38549 | TTTAAACAATAAAAA TAATTTA ATAAG TAAATTA GACGGCAAATACCCT CLH_0713 730456 - 731409 + | ribonuclease HI CLH_0714 731503 - 731679 + | hypothetical protein TERM 975 731697 - 731725 + F 100 -9.1 -5.36441 | opp_overlap 731697 TATATTAATGAAAAA GACAAGAAAAA TAATTAT TTTTTCTTGTC TTTTTTCTATAAAAA TERM 976 731725 - 731697 - f 100 -9.1 -4.91873 | opp_overlap 731697 TATATTAATGAAAAA GACAAGAAAAA TAATTAT TTTTTCTTGTC TTTTTTCTATAAAAA TERM 977 731816 - 731804 - f 73 -3.5 -5.47821 | opp_overlap 731804, overlap 731813 AGTTATGTAAAAAAA TATAT TAA ATATA ATGTAATTATATCAA CLH_0715 731958 - 733256 + | helix-turn-helix domain protein TERM 978 734092 - 734074 - g 100 -10.4 -4.87389 | overlap 734070 GATTTTAAAAACAAA GCTTTTGA ATA TCAAAAGC ATAATCCTATAAATT TERM 979 734425 - 734435 + G 70 -5.4 -4.46112 | opp_overlap 734425 734421 AAGTATATGAATATA GCAT TAG ATGC TTTATTTAAGTCAGG CLH_0716 733306 - 734571 + | tetratricopeptide repeat protein TERM 980 734699 - 734647 - f 95 -8.2 -5.24551 | gap 1, opp_overlap 734657 734660, overlap 734649 TTAAATTAAGAAAAA CATGTAAAAATAACATCGTTATATC AGTA GATATAAGGGTGTTATT-TTACATA CATAATAATTTTAAT TERM 981 734697 - 734649 - f 80 -8.6 -4.23353 | gap 1, opp_overlap 734657 734660, overlap 734647 AAATTAAGAAAAACA TGTAAAAATAACATCGTTATATC AGTA GATATAAGGGTGTTATT-TTACA TACATAATAATTTTA TERM 982 734657 - 734690 + F 84 -9.1 -4.20084 | opp_overlap 734649 734647, overlap 734660 AAAAACATGTAAAAA TAACATCGTTATATC AGTA GATATAAGGGTGTTA TTTTACATACATAAT TERM 983 734660 - 734687 + F 73 -6.4 -4.22214 | opp_overlap 734649 734647, overlap 734657 AACATGTAAAAATAA CATCGTTATATC AGTA GATATAAGGGTG TTATTTTACATACAT CLH_0717 734784 - 735317 + | hypothetical protein TERM 984 735365 - 735343 - f 100 -10.8 -5.42259 | opp_overlap 735343 TTATTTTTAAAAAAA GTTCTATTAA AAT TTAATAGAAC TTTTTTAATTTATAA TERM 985 735343 - 735365 + F 100 -10.8 -5.42514 | opp_overlap 735343 TTATTTTTAAAAAAA GTTCTATTAA AAT TTAATAGAAC TTTTTTAATTTATAA clpB 735468 - 738071 + | ATP-dependent chaperone ClpB TERM 986 738087 - 738115 + T 95 -10.5 -3.8377 | opp_overlap 738091, overlap 738060 738091 GTAAGTTTTATTTAT TAAAGAGGCTATT TAA AATAGTCTCTTTG TTTAATATAAAAATT TERM 987 738091 - 738111 + T 86 -9.1 -4.53602 | opp_overlap 738091, overlap 738060 738087 GTTTTATTTATTAAA GAGGCTATT TAA AATAGTCTC TTTGTTTAATATAAA TERM 988 738133 - 738163 + T 100 -11.6 -4.06384 | opp_overlap 738131, overlap 738139 TAATATAAAAATTTG TTATATTATTAAAA ATA TTTTAATAATATAA TTTGTGATGTTAGAA TERM 989 738347 - 738360 + T 73 -5.3 -4.8269 | overlap 738348 GAGAATTTGTTTTAT CTGAA AAAT TTCAG TTTTTCATAATTCTA CLH_0719 738638 - 738456 - | hypothetical protein CLH_0720 739790 - 738822 - | peptidase, T4 family TERM 990 739955 - 739905 - R 100 -15.4 -3.2614 | gap 1, opp_overlap 739905 739910, overlap 739910 TATTTTTTACATTAA TAAAAGAACAATGAT-GTAAAAA AATATA TTTTTACTATCATTGTTCTTTTA TTTTATATTTAAGTT TERM 991 739905 - 739955 + r 100 -15.4 -4.81359 | gap 1, opp_overlap 739905 739910, overlap 739910 TATTTTTTACATTAA TAAAAGAACAATGAT-GTAAAAA AATATA TTTTTACTATCATTGTTCTTTTA TTTTATATTTAAGTT TERM 992 739950 - 739910 - R 100 -10.9 -4.75472 | gap 1, opp_overlap 739910 739905, overlap 739905 TTTACATTAATAAAA GAACAATGAT-GTAAAAA AATATA TTTTTACTATCATTGTTC TTTTATTTTATATTT TERM 993 739910 - 739950 + r 100 -10.9 -5.2894 | gap 1, opp_overlap 739905 739910, overlap 739905 TTTACATTAATAAAA GAACAATGAT-GTAAAAA AATATA TTTTTACTATCATTGTTC TTTTATTTTATATTT CLH_0721 740565 - 739969 - | membrane protein TERM 994 740524 - 740538 + g 70 -2.9 -5.29885 | ACCTACCATAGCCAT TTTTC TAGTT GAAAA TTTTGTTTTTACATT CLH_0722 740971 - 741837 + | PP-loop family protein TERM 995 741843 - 741864 + F 72 -5.9 -4.53602 | CGAAGAGTAAGTAGG GGTTGTC TTAATTTT GACAACC TTTATTTAATATAAA CLH_0723 741971 - 742168 + | hypothetical protein CLH_0724 742358 - 744112 + | diguanylate cyclase/phosphodiesterase domain 2 TERM 996 744413 - 744380 - f 82 -9.7 -3.33261 | opp_overlap 744373 744383, overlap 744382 744383 TGGCAACGCGGATAA TATCCGTCCTATATA TTTA TATATAGGACGGTTT TTTTTGTTTATATTG TERM 997 744411 - 744382 - f 93 -12.3 -3.23447 | opp_overlap 744373 744383, overlap 744380 744383 GCAACGCGGATAATA TCCGTCCTATATA TTTA TATATAGGACGGT TTTTTTTGTTTATAT TERM 998 744383 - 744410 + F 100 -15.8 -6.28967 | opp_overlap 744382 744380 744383, overlap 744373 CAACGCGGATAATAT CCGTCCTATATA TTTA TATATAGGACGG TTTTTTTTGTTTATA TERM 999 744410 - 744383 - f 100 -15.8 -2.53747 | opp_overlap 744373 744383, overlap 744382 744380 CAACGCGGATAATAT CCGTCCTATATA TTTA TATATAGGACGG TTTTTTTTGTTTATA CLH_0725 744566 - 745084 + | putative tryptophan transport protein TERM 1000 745103 - 745138 + T 100 -10.8 -5.34381 | opp_overlap 745103 ATAATAAATAAAAAA GCATCTATTATTAA TTTATTTT TTAATAATAGATGC TTTTTATTTGGATTT TERM 1001 745138 - 745103 - T 100 -10.8 -5.82036 | opp_overlap 745103 ATAATAAATAAAAAA GCATCTATTATTAA TTTATTTT TTAATAATAGATGC TTTTTATTTGGATTT CLH_0726 745888 - 745172 - | polysaccharide deacetylase domain protein TERM 1002 746068 - 746108 + H 95 -10.7 -4.29176 | opp_overlap 746068 ACGCTTATTAGATAA GACTATTTATAGAAGGGAA AAA TTCTCATTTGTAAATAGTC TTTTAAATTAAATAT TERM 1003 748000 - 747990 - g 78 -2.6 -5.92399 | TAAGAAAAGAAAAAA TATA TAT TATA AATTAAAGAAAAATA TERM 1004 749129 - 749119 - g 74 -4 -5.3104 | opp_overlap 749119 TTAGGAAAAATAAAA TTAG CAT CTAA TTATTATGAATTAAT TERM 1005 749392 - 749376 - g 81 -3.1 -5.79526 | opp_overlap 749366 AGATGTGAAAAAAAA TTTTCAA TTA TTAAAAA ATGAATTGGATGAAT TERM 1006 749663 - 749645 - g 71 -7.5 -3.59936 | opp_overlap 749647 GAAATCAAGAAGTAA GAGCAAT TGTAT ATTGCTC TATAGCTGAAAAATA CLH_0727 746305 - 751491 + | ggdef domain protein CLH_0728 751618 - 752268 + | hypothetical protein TERM 1007 752279 - 752318 + F 95 -11 -3.64332 | opp_overlap 752253 752285, overlap 752280 752285 GATAATATCTATATT TCAAAAGATTGATAAGAT TGTT ACCTTATCAATCTTTTGC TATTTATATAATAAT TERM 1008 752280 - 752317 + F 100 -14.5 -2.77876 | opp_overlap 752253 752285, overlap 752279 752285 ATAATATCTATATTT CAAAAGATTGATAAGAT TGTT ACCTTATCAATCTTTTG CTATTTATATAATAA TERM 1009 752312 - 752285 - f 95 -10.8 -4.1721 | opp_overlap 752280 752279 752285 ATCTATATTTCAAAA GATTGATAAGAT TGTT ACCTTATCAATC TTTTGCTATTTATAT TERM 1010 752285 - 752312 + F 82 -8.6 -4.5394 | opp_overlap 752285, overlap 752280 752279 ATCTATATTTCAAAA GATTGATAAGAT TGTT ACCTTATCAATC TTTTGCTATTTATAT dut 752409 - 752849 + | deoxyuridine 5'-triphosphate nucleotidohydrolase TERM 1011 752935 - 752987 + T 100 -13.1 -5.10208 | opp_overlap 752939, overlap 752939 TATATATTAAAATAA AAAACCCTACTTTGAAATAATTCAT AGA ATAAATTGTTTCAAAGTAGGGTTGA TTTTTATTAACATTA TERM 1012 752983 - 752939 - T 100 -18.3 -5.83211 | opp_overlap 752939 752935 TATTAAAATAAAAAA CCCTACTTTGAAATAATTCAT AGA ATAAATTGTTTCAAAGTAGGG TTGATTTTTATTAAC TERM 1013 752939 - 752983 + T 100 -18.3 -3.9407 | opp_overlap 752939, overlap 752935 TATTAAAATAAAAAA CCCTACTTTGAAATAATTCAT AGA ATAAATTGTTTCAAAGTAGGG TTGATTTTTATTAAC CLH_0730 755057 - 753132 - | ABC transporter, ATP-binding protein TERM 1014 753302 - 753314 + g 89 -6.3 -5.40279 | CATTTTTATTTATAG TCTCT TCA AGAGA TTTTATTTTATTTTG CLH_0731 755165 - 755779 + | transcriptional regulator, TetR family TERM 1015 755913 - 755856 - T 90 -9.8 -3.75153 | gap 1, opp_overlap 755856 755868, overlap 755861 755868 TTTTTTCAATTGAAA TATAATAGAAAATACCTATCTTAATAT ATTGA AT-TTAAGATAGGTATTTTTTATAATA TTAATTTTCTTTGTA TERM 1016 755856 - 755913 + T 100 -12 -3.90741 | gap 1, opp_overlap 755856 755861 755868, overlap 755868 TTTTTTCAATTGAAA TATAATAGAAAATACCTATCTTAATAT ATTGA AT-TTAAGATAGGTATTTTTTATAATA TTAATTTTCTTTGTA TERM 1017 755908 - 755861 - T 86 -9.7 -3.86372 | gap 1, opp_overlap 755856 755868, overlap 755856 755868 TCAATTGAAATATAA TAGAAAATACCTATCTTAATAT ATTGA AT-TTAAGATAGGTATTTTTTA TAATATTAATTTTCT TERM 1018 755868 - 755901 + T 100 -7.8 -5.36965 | gap 1, opp_overlap 755861 755856 755868, overlap 755856 AAATATAATAGAAAA TACCTATCTTAATAT ATTGA AT-TTAAGATAGGTA TTTTTTATAATATTA TERM 1019 755901 - 755868 - T 86 -7.8 -4.80729 | gap 1, opp_overlap 755868 755856, overlap 755861 755856 AAATATAATAGAAAA TACCTATCTTAATAT ATTGA AT-TTAAGATAGGTA TTTTTTATAATATTA CLH_0732 756534 - 755914 - | hypothetical protein CLH_0733 757081 - 756545 - | hypothetical protein TERM 1020 757527 - 757516 - g 70 -3 -5.36441 | opp_overlap 757516 TTTTCATATAAAAAA TAGT GATA ACTA TGTTGTGATTTATGT CLH_0734 757250 - 758557 + | cysteine desulphurase, SufS TERM 1021 758553 - 758599 + T 100 -15.7 -2.6472 | opp_overlap 758559 758562, overlap 758559 758562 GAGGAAAGTTAACTT TATAAATAATGAACTTTTAGA ATATA TCTAAAAGTTCATTATTTAGA TAATATGAAATCTTG TERM 1022 758593 - 758559 - T 100 -14.7 -3.9279 | opp_overlap 758553 758559 758562, overlap 758562 AGTTAACTTTATAAA TAATGAACTTTTAGA ATATA TCTAAAAGTTCATTA TTTAGATAATATGAA TERM 1023 758559 - 758593 + T 100 -14.7 -3.70149 | opp_overlap 758559 758562, overlap 758553 758562 AGTTAACTTTATAAA TAATGAACTTTTAGA ATATA TCTAAAAGTTCATTA TTTAGATAATATGAA TERM 1024 758590 - 758562 - T 100 -12 -4.08948 | opp_overlap 758559 758553 758562, overlap 758559 TAACTTTATAAATAA TGAACTTTTAGA ATATA TCTAAAAGTTCA TTATTTAGATAATAT TERM 1025 758562 - 758590 + T 100 -12 -3.98075 | opp_overlap 758562 758559, overlap 758559 758553 TAACTTTATAAATAA TGAACTTTTAGA ATATA TCTAAAAGTTCA TTATTTAGATAATAT TERM 1026 758633 - 758671 + T 82 -9.2 -3.3941 | opp_overlap 758639, overlap 758639 TATTAGATTTTTATA GTAAGAGAGTTATTAG TTTTAGT TTAATAACTCTTTTAC TTAGTTAAATATAAT CLH_0735 759903 - 758686 - | phosphofructokinase domain protein CLH_0736 760121 - 760672 + | integral membrane protein CLH_0737 760735 - 761148 + | transcriptional regulator, Fur family TERM 1027 761305 - 761352 + T 100 -15.4 -4.2748 | opp_overlap 761310 761315, overlap 761310 761315 TATCAATAAAGTAGA AAAAATAAAATGTGCTAAATAA ATTT TTATTTAGCACATTTTGTTTTG TGTTTTTTATAAGTA TERM 1028 761347 - 761310 - T 100 -13.1 -5.43621 | opp_overlap 761305 761310 761315, overlap 761315 ATAAAGTAGAAAAAA TAAAATGTGCTAAATAA ATTT TTATTTAGCACATTTTG TTTTGTGTTTTTTAT TERM 1029 761310 - 761347 + T 100 -15.3 -5.08086 | opp_overlap 761310 761315, overlap 761305 761315 ATAAAGTAGAAAAAA TAAAATGTGCTAAATAA ATTT TTATTTAGCACATTTTG TTTTGTGTTTTTTAT TERM 1030 761342 - 761315 - T 100 -13 -5.49579 | opp_overlap 761310 761305 761315, overlap 761310 GTAGAAAAAATAAAA TGTGCTAAATAA ATTT TTATTTAGCACA TTTTGTTTTGTGTTT TERM 1031 761315 - 761342 + T 100 -13 -5.2894 | opp_overlap 761315 761310, overlap 761310 761305 GTAGAAAAAATAAAA TGTGCTAAATAA ATTT TTATTTAGCACA TTTTGTTTTGTGTTT TERM 1032 761438 - 761406 - T 79 -5.1 -5.52079 | opp_overlap 761406 ATAGTAAAATAAAAA TCTGTATATTAAA TTTAGTT TATAATATACAGA TTTTTATTTTTTAAA TERM 1033 761406 - 761438 + T 84 -5.1 -5.75538 | opp_overlap 761406 ATAGTAAAATAAAAA TCTGTATATTAAA TTTAGTT TATAATATACAGA TTTTTATTTTTTAAA CLH_0738 762256 - 761462 - | hydrophobic membrane protein ZurM CLH_0739 762963 - 762289 - | zinc import ATP-binding protein ZnuC TERM 1034 762442 - 762461 + g 79 -6.6 -4.7254 | AGATATAATTGTTTT GTTTAAAT CTTC ATTTAAAC TTTTTAATAAAGGAT TERM 1035 762498 - 762515 + g 70 -8.5 -2.59154 | overlap 762497 762512 CATTCTGACTTTTTT CATCAAC TCCA GTTGATG GTTCATCTAATATTA TERM 1036 762986 - 763028 + r 100 -21.2 -2.96899 | opp_overlap 762986 763022, overlap 762989 TCAACTCCTTAAAAA TAATATATTTAGGCATTATA TTA TATAATGCCTAAATATATTA TATACTTAGTTGCAA TERM 1037 763028 - 762986 - R 100 -21.2 -4.59853 | opp_overlap 762986 762989, overlap 763022 TCAACTCCTTAAAAA TAATATATTTAGGCATTATA TTA TATAATGCCTAAATATATTA TATACTTAGTTGCAA TERM 1038 762989 - 763025 + r 100 -18.5 -3.62476 | opp_overlap 762986 763022, overlap 762986 ACTCCTTAAAAATAA TATATTTAGGCATTATA TTA TATAATGCCTAAATATA TTATATACTTAGTTG TERM 1039 763035 - 763057 + r 95 -12.2 -3.31931 | opp_overlap 763033 AATATATTATATACT TAGTTGCAAA TTG TTTGCAACTA TTACTAATTATATAC CLH_0740 763483 - 763061 - | hypothetical protein TERM 1040 763432 - 763442 + g 87 -2.6 -6.17292 | opp_overlap 763432, overlap 763419 TATATTGATTTAAAT TAAT AGT ATTA TTTTTTTTTACATTT TERM 1041 763657 - 763645 - H 74 -4.9 -5.16038 | opp_overlap 763645 AGATAATAAATAAAA TCAAT TCT ATTGA TTATTAAGATAAAAT CLH_0741 763892 - 764290 + | hypothetical protein pepF 764336 - 766120 + | oligoendopeptidase F TERM 1042 766281 - 766305 + F 100 -14.5 -4.11033 | opp_overlap 766281 TATTATTTTATATAA TGCTGTCTTAA TTT TTAAGACAGCA TTTGTAATATTTGGT TERM 1043 766305 - 766281 - f 100 -14.5 -3.50869 | opp_overlap 766281 TATTATTTTATATAA TGCTGTCTTAA TTT TTAAGACAGCA TTTGTAATATTTGGT CLH_0743 766483 - 767448 + | rhomboid family protein CLH_0744 767484 - 768095 + | hypothetical protein TERM 1044 768163 - 768111 - f 100 -9.8 -4.46854 | gap 1, opp_overlap 768118 768159, overlap 768118 ATATAAAATGTAAAA TGAT-AAATTCACAATATATTATAC AAGA ATATAATATATTGTGAATTTTATTA TTATTTTAATAATAT TERM 1045 768155 - 768118 - f 100 -13.9 -4.21402 | opp_overlap 768118, overlap 768111 ATGTAAAATGATAAA TTCACAATATATTATAC AAGA ATATAATATATTGTGAA TTTTATTATTATTTT TERM 1046 768118 - 768155 + F 100 -13.2 -5.06116 | opp_overlap 768118 768111 ATGTAAAATGATAAA TTCACAATATATTATA CAAGAA TATAATATATTGTGAA TTTTATTATTATTTT gluD 768269 - 769621 + | glutamate dehydrogenase, NAD-specific TERM 1047 769652 - 769682 + F 100 -15.8 -4.2349 | opp_overlap 769652 TTATTAATGCATAAA GAGTTAACTTTAAA TAA TTTAAAGTTAACTC TTTTAAATATAAAAA TERM 1048 769682 - 769652 - f 100 -15.8 -3.98826 | opp_overlap 769652 TTATTAATGCATAAA GAGTTAACTTTAAA TAA TTTAAAGTTAACTC TTTTAAATATAAAAA CLH_0746 770171 - 771601 + | glycosyl transferase, group 2 family protein CLH_0747 772015 - 773964 + | DNA gyrase subunit B TERM 1049 776034 - 776020 - g 72 -3.6 -5.20783 | ATTTAAATATAAAAA CCAAAT TAG ATTTAG AGTTTACAATAGAAG CLH_0748 773985 - 776894 + | DNA gyrase subunit A TERM 1050 777285 - 777265 - g 70 -6.9 -4.03815 | overlap 777256 ATGAAAGAAATATAA CTTCATATC CTG GATTTGAAG ATGAACTTATAAATT CLH_0749 776913 - 777449 + | protein ThiJ recJ 777576 - 779342 + | single-stranded-DNA-specific exonuclease RecJ TERM 1051 779666 - 779635 - T 100 -11.9 -5.81622 | opp_overlap 779635 ACAAAATTAAAAAAA GATAATCAAAACT GTTTAT AGTTTTGATTATC TTTTTTCTTATATAT TERM 1052 779635 - 779666 + T 100 -12.6 -5.62045 | opp_overlap 779635 ACAAAATTAAAAAAA GATAATCAAAACTG TTTA TAGTTTTGATTATC TTTTTTCTTATATAT CLH_0751 779874 - 779686 - | hypothetical protein CLH_0752 781199 - 779904 - | 4-hydroxybutyrate coenzyme A transferase TERM 1053 781627 - 781668 + r 86 -9 -4.37658 | opp_overlap 781631, overlap 781629 781631 ATAAAAGCACATAAT AAAAGGTGTATTGAAATA AATTAA TATTTCAATACACCTATC TTTTATAGGAGCGTT TERM 1054 781629 - 781666 + r 95 -11.6 -3.79419 | opp_overlap 781631, overlap 781627 781631 AAAAGCACATAATAA AAGGTGTATTGAAATA AATTAA TATTTCAATACACCTA TCTTTTATAGGAGCG TERM 1055 781631 - 781664 + r 100 -14.2 -3.48115 | opp_overlap 781631, overlap 781629 781627 AAGCACATAATAAAA GGTGTATTGAAATA AATTAA TATTTCAATACACC TATCTTTTATAGGAG TERM 1056 781664 - 781631 - R 100 -14.2 -4.86822 | opp_overlap 781631 781629 781627 AAGCACATAATAAAA GGTGTATTGAAATA AATTAA TATTTCAATACACC TATCTTTTATAGGAG CLH_0753 781887 - 781690 - | hypothetical protein murG 782486 - 783562 + | undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase TERM 1057 784071 - 784107 + G 73 -9 -2.62043 | opp_overlap 784075, overlap 784067 784075 TTATGAAATTATGGA CTAATACAATGAAATC ATATG GATTTAATTGTATTGG TGAATTAGTTGTAAA CLH_0755 783749 - 784186 + | flavodoxin TERM 1058 786900 - 786890 - g 74 -6.8 -4.34486 | opp_overlap 786897, overlap 786887 ACTAAGAATAAAGAA GGAC ATG GTCC AGCTTGGGCTAATTC TERM 1059 787128 - 787118 - g 75 -5.4 -4.82901 | GCTGCTTTAGAAAAA TCTG GTA CAGA AGCTGCTAAAGAAAT nifJ 784313 - 787813 + | pyruvate:ferredoxin (flavodoxin) oxidoreductase TERM 1060 787855 - 787834 - f 74 -8.7 -3.00418 | opp_overlap 787834, overlap 787833 TATTCATTAAATAAG GGGTGACCA GAAA TGGTCATCC TTTTTTCTTTAGGAA TERM 1061 787834 - 787855 + F 100 -10.9 -5.63517 | opp_overlap 787834 787833 TATTCATTAAATAAG GGGTGACCA GAAA TGGTCATCC TTTTTTCTTTAGGAA CLH_0757 788313 - 788672 + | hypothetical protein TERM 1062 788842 - 788869 + F 100 -13 -4.88405 | opp_overlap 788846 GCTATAATATTTTTA TAGACTTTAGTA ATTT TACTAAAGTCTA TTTTATTTACAACTT TERM 1063 789552 - 789538 - g 78 -7.2 -4.4572 | AAGAGCTTAAAGAAA TAGCAA GCT TTGCTA AAAAACATGATATGT CLH_0758 788976 - 790169 + | aspartate aminotransferase TERM 1064 790206 - 790226 + F 83 -6.1 -5.40072 | opp_overlap 790206 GACATTTTATAAAAA CCTCTTGTT AAA AACATGGGG TTTTTTTGAAGAAAA CLH_0759 790396 - 791034 + | HAD-superfamily subfamily IB hydrolase TERM 1065 791170 - 791185 + G 74 -6.2 -4.58663 | opp_overlap 791170 791169 AGTTTTAAGGATAAT TAATGG AAAA CCATTA TTTTTAGAAAATCAT CLH_0760 791060 - 791863 + | enzyme of ilve/pabc family TERM 1066 792075 - 792054 - g 73 -3.1 -5.48825 | TATTACTCAAAAAAA TACTTTTTT TAAG AAGAAAGTA GAAATAGAAATTTCT TERM 1067 792299 - 792289 - g 70 -6.8 -4.02302 | opp_overlap 792289, overlap 792287 TGCATATCAAAAACA GCAG TTA CTGC TTTAGATAATATAGA TERM 1068 792491 - 792478 - g 91 -3.8 -6.07374 | ACAAAAAAGAAAAAA GGTG CCTATC CACC TAAATACACATATGA TERM 1069 793429 - 793409 - g 82 -2.6 -5.9873 | TTATTAGAAAAAAAA TTATGGGA TTAGG TCCTATAA AAATAAAAAAATATT CLH_0761 791944 - 793890 + | hypothetical protein CLH_0762 793905 - 794354 + | chemotaxis protein CheW CLH_0763 794363 - 794851 + | chemoreceptor glutamine deamidase CheD TERM 1070 795100 - 795086 - g 78 -5.8 -4.99638 | opp_overlap 795086 795095 795095, overlap 795095 AGAGTTACATAAAAA GAATAA GAA TTATTC TATAATAATGTTAAG TERM 1071 795573 - 795557 - g 70 -6.7 -4.00532 | overlap 795560 TTCTGAAAGATTAAA TAAGATT TGT AATCTTA AAGTCTTAGAGGGTG TERM 1072 795627 - 795611 - g 73 -5.2 -4.79752 | overlap 795625 GCTAAGAATAGAAAA CAATGT GATAT ACATTG CCAAAGGTGGCTATC CLH_0764 794865 - 795971 + | chemotaxis response regulator protein-glutamate methylesterase TERM 1073 796452 - 796442 - g 71 -4 -5.04265 | AAAAAATATTAAAAA TCAA GAT TTGA GTAAATATTTTGAGA cheR 795981 - 796748 + | CheR methyltransferase, SAM binding domain TERM 1074 797351 - 797339 - g 70 -6.3 -4.19238 | opp_overlap 797323 TTTTTAATTGTAAAA GATCT TGA AGATC ATGGTGAAATTTTAA CLH_0766 796760 - 798784 + | chemotaxis protein CheA CLH_0767 798808 - 799407 + | CheY-P phosphatase CheC CLH_0768 799426 - 799785 + | chemotaxis protein CheY CLH_0769 799810 - 800205 + | chemotaxis signal transduction protein CheW TERM 1075 800318 - 800303 - g 72 -6.8 -4.11884 | overlap 800304 AATTAGAACCAGAAA CCGTCC CTAA GGACGA TGAAAAACATAAAAT TERM 1076 800317 - 800304 - g 70 -8.1 -3.06046 | overlap 800303 ATTAGAACCAGAAAC CGTCC CTAA GGACG ATGAAAAACATAAAA TERM 1077 800487 - 800477 - g 70 -5.4 -4.47679 | AAGTCAAAATAGAAA CTGT AGA ACAG ATAACCTATGAGGAA fliM 800227 - 801222 + | flagellar motor switch protein FliM fliN 801215 - 802366 + | flagellar motor switch protein FliN TERM 1078 802379 - 802350 - f 71 -7.4 -3.94 | opp_overlap 802354 802355, overlap 802355 GTAATGCGGAAAGAA TAAAATCTCTTA GATAAT TAAGAGACTTTA AATAGATGGAGATAT TERM 1079 802374 - 802355 - f 72 -5.1 -5.00196 | opp_overlap 802354 802355, overlap 802350 GCGGAAAGAATAAAA TCTCTTA GATAAT TAAGAGA CTTTAAATAGATGGA TERM 1080 802388 - 802446 + F 95 -10.3 -4.05402 | gap 1 GACTTTAAATAGATG GAGATATAATTAATAGTATATAATTTTT ATTA AAGAGTTATATAA-ATTAATTATATCTC TATTTTTGATTAAAA CLH_0772 802725 - 803003 + | negative regulator of flagellin synthesis CLH_0773 803007 - 803417 + | hypothetical protein TERM 1081 804070 - 804054 - g 70 -6.7 -4.02707 | opp_overlap 804053 TAAAGATGTAAATAA TTATTTG GAT CAAATAA ATGAATTAAATAAGC flgK 803509 - 805323 + | flagellar hook-associated protein FlgK flgL 805369 - 806577 + | flagellar hook-associated protein 3 CLH_0776 806595 - 807020 + | flagellar assembly factor FliW csrA 807025 - 807240 + | carbon storage regulator CLH_0778 807427 - 807783 + | flaG family protein CLH_0779 807804 - 808100 + | hypothetical protein fliS 808112 - 808489 + | flagellar protein FliS TERM 1082 808774 - 808731 - g 91 -9.8 -4.08144 | overlap 808732 TCTAGTAATTATAAA TCTGTTACCTTTACATCA AGTAGTGA TGCTGTAAAGGTAACAGC GGGAAGTGGAGCTAA TERM 1083 808773 - 808732 - g 100 -13.3 -3.04404 | overlap 808731 CTAGTAATTATAAAT CTGTTACCTTTACATCA AGTAGTGA TGCTGTAAAGGTAACAG CGGGAAGTGGAGCTA CLH_0781 808509 - 810596 + | flagellar cap protein FliD CLH_0782 810601 - 810927 + | hypothetical protein CLH_0783 811036 - 811215 + | hypothetical protein CLH_0784 811632 - 812444 + | flagellin TERM 1084 812469 - 812492 + F 100 -8.2 -5.47159 | AATCTAAAATTTCAA GAGTCATGGT GAGA ACTATGGCTC TTTTTTCTATTGAAA TERM 1085 812650 - 812633 - g 78 -2.8 -5.85737 | opp_overlap 812633 AGATGAAGAAAAAAA TTTAAG AAGATG CTTAAA TAGTGTAAAACCACT CLH_0785 812589 - 814493 + | glycosyl transferase, family 2 CLH_0786 814704 - 815516 + | flagellin TERM 1086 815542 - 815565 + F 95 -8.2 -5.18643 | AACTAAAATTTTTAA GAGTCATGGT GAGA ACTATGGCTC TTTTATTTTAATTAA CLH_0787 815680 - 817479 + | hypothetical protein CLH_0788 817508 - 817855 + | hypothetical protein CLH_0789 817926 - 819137 + | hypothetical protein TERM 1087 819144 - 819132 - f 77 -3.5 -5.71638 | GAAGAAGTAAAAAAA TTATA ATT TATAA GTGAGTATATAACAT TERM 1088 820157 - 820147 - g 73 -5.4 -4.77757 | opp_overlap 820147 GGTGAAAAAGTAAAA CCTA TAA TAGG TAAATTTAAAGAAAA CLH_0790 819262 - 820209 + | domain of unknown function family CLH_0791 820206 - 820889 + | putative hydrolase CLH_0792 820946 - 821728 + | spore coat polysaccharide biosynthesis protein SpsF CLH_0793 821764 - 822513 + | CalS11 CLH_0794 822586 - 823464 + | methyltransferase type 12 TERM 1089 823983 - 824003 + G 71 -8.5 -2.89527 | overlap 823980 AACATGTATTGATAG TGAAAAAAT ATT ATTTTTTCA TCATTCTACTATTGC TERM 1090 824505 - 824495 - g 82 -2.6 -6.01187 | opp_overlap 824495 AAGCAAAGAAAAAAA TAAA TAC TTTA TTTGATATACAAAAG CLH_0795 823534 - 825129 + | hypothetical protein CLH_0796 825444 - 825557 + | hypothetical protein TERM 1091 826566 - 826553 - g 71 -2.5 -5.44119 | CTGATTTGAAAAAAA TATAT GAGG ATATA GCTCATTTATCTTAT CLH_0797 825700 - 826674 + | glycosyltransferase CLH_0798 826700 - 827755 + | sialic acid synthase CLH_0799 827789 - 828805 + | FlmA TERM 1092 829760 - 829739 - g 81 -3.1 -5.86332 | gap 1 GGAATCTAAAAAAAA TGGTA-ACTT AGA AAGCATACCA GATCATATAGAATAT CLH_0800 829113 - 830330 + | hypothetical protein TERM 1093 830591 - 830573 - g 70 -3.2 -5.27335 | opp_overlap 830575, overlap 830575 GTGTTTAAAGAAAAA TATGATAT TAT ATATCATT TAGCCGCATCTATAA TERM 1094 830589 - 830575 - g 70 -5.8 -4.27026 | opp_overlap 830575, overlap 830573 GTTTAAAGAAAAATA TGATAT TAT ATATCA TTTAGCCGCATCTAT CLH_0801 830366 - 831370 + | putative UDP-glucose 4-epimerase CLH_0802 831395 - 833404 + | sulfatase-domain-containing protein CLH_0803 833870 - 834712 + | flagellin TERM 1095 834733 - 834776 + F 90 -7.1 -5.38054 | opp_overlap 834733 ATGTTTATTATAGTA TACTTTACTTAATAGTAAA TTTGAT TTTAATGTTAAGTAAGGTA TTTTTATTTATAAAA TERM 1096 834990 - 835000 + F 75 -4 -5.54338 | overlap 834981 834984 GCCAGTTGCCGAAGG GTAT AAT ATAC TTTTTGTTTTAATTA TERM 1097 835081 - 835098 + F 83 -4.1 -5.95286 | AATTTGATGATATAA CTACTCT TTAG GGGGTAG TTTTTTGTTTTTAGT flgB 835500 - 835901 + | flagellar basal-body rod protein FlgB flgC 835916 - 836323 + | flagellar basal-body rod protein FlgC fliE 836337 - 836663 + | flagellar hook-basal body complex protein fliF 836688 - 838250 + | flagellar M-ring protein FliF fliG 838257 - 839273 + | flagellar motor switch protein FliG CLH_0809 839257 - 840042 + | flagellar assembly protein fliI 840054 - 841361 + | flagellar protein export ATPase FliI fliJ 841396 - 841839 + | flagellar export protein FliJ TERM 1098 842822 - 842808 - g 72 -5 -4.95618 | overlap 842804 AACAGTAAAAATAAA CCCAAA AGA TTTAGG TCAAGTTACTATTAG CLH_0812 841846 - 843150 + | putative flagellar hook-length control protein FliK TERM 1099 843727 - 843714 - g 71 -2.4 -5.42265 | opp_overlap 843714 TTAAAGGATAAAAAA GTAG TTATTT CTAC TTATGATAAAGATGG CLH_0813 843162 - 844127 + | flagellar hook assembly protein FlgD CLH_0814 844131 - 844520 + | flagellar operon protein TERM 1100 845461 - 845474 + G 72 -6.7 -4.11216 | opp_overlap 845461 ACAGCTCTTGGACAA GTAGC TATG GCTAC TTTTAAAAATCCAGA TERM 1101 845569 - 845558 - g 70 -2.2 -5.42164 | CAGAAATAATAAAAA CTCC AGTA GGAA AGCTAGCAACTGACT CLH_0815 844663 - 845763 + | flagellar hook protein FlgE CLH_0816 845960 - 847054 + | flagellar hook protein FlgE TERM 1102 847065 - 847097 + F 91 -10.7 -3.6502 | opp_overlap 847060, overlap 847066 847068 GATAAGATAATTTTA TGATTAGGGAGTAAA GTA TTTTCTCCCTAATCC TTTAAATAAAAAATA TERM 1103 847066 - 847096 + F 100 -14.2 -2.78798 | opp_overlap 847060, overlap 847065 847068 ATAAGATAATTTTAT GATTAGGGAGTAAA GTA TTTTCTCCCTAATC CTTTAAATAAAAAAT TERM 1104 847068 - 847094 + F 87 -11 -2.94144 | opp_overlap 847060, overlap 847066 847065 AAGATAATTTTATGA TTAGGGAGTAAA GTA TTTTCTCCCTAA TCCTTTAAATAAAAA TERM 1105 847196 - 847180 - g 76 -6.7 -4.51994 | opp_overlap 847176, overlap 847176 GGAATGAATAATAAA TCATTTA TAT TAAATGA TGATCATATTGAAAA CLH_0817 847150 - 847341 + | hypothetical protein CLH_0818 847357 - 848160 + | chemotaxis protein MotA CLH_0819 848163 - 848906 + | chemotaxis protein MotB fliL 848912 - 849391 + | flagellar basal body-associated protein FliL CLH_0821 849405 - 849791 + | putative flagellar biosynthesis protein fliP 849794 - 850573 + | flagellar biosynthetic protein FliP fliQ 850585 - 850854 + | flagellar biosynthetic protein FliQ TERM 1106 850915 - 850930 + G 74 -4.8 -5.00467 | TATTTTTTATATTTT TAAGAT TAAC ATCTTA TTTTGTTATTGTTAA CLH_0824 850872 - 852704 + | flagellar biosynthetic protein flhA 852734 - 854800 + | flagellar biosynthesis protein FlhA flhF 854800 - 856011 + | flagellar biosynthetic protein FlhF CLH_0827 856005 - 856865 + | ATPases involved in chromosome partitioning, MinD family CLH_0828 856876 - 857511 + | type IV pilus assembly protein PilZ CLH_0829 857619 - 858347 + | RNA polymerase sigma-D factor TERM 1107 858697 - 858676 - g 78 -7.5 -4.34737 | opp_overlap 858675 858680 858694, overlap 858692 858694 GTACTAAGGAAGAAA TTAATATCA TAGA TGATATTAA CTTAGATAAAGTTAA CLH_0830 858360 - 858998 + | hypothetical protein CLH_0831 859076 - 859198 + | hypothetical protein CLH_0832 859199 - 859972 + | flagellar hook-basal body complex protein CLH_0833 859986 - 860756 + | flagellar hook-basal body complex protein FlhP TERM 1108 860963 - 860988 + T 100 -12.1 -6.23545 | opp_overlap 860963 TAGCTAAATAAAAAA TAGTATCTCAA AAAT TTGAGATACTA TTTTTTTTATTTAAC TERM 1109 860988 - 860963 - T 100 -12.1 -5.65927 | opp_overlap 860963 TAGCTAAATAAAAAA TAGTATCTCAA AAAT TTGAGATACTA TTTTTTTTATTTAAC CLH_0834 862646 - 861006 - | putative manganese-dependent inorganic pyrophosphatase TERM 1110 864126 - 864109 - g 70 -4.9 -4.71708 | AACAATAAAGTAAAA CCTTTGA CATA TCAAAAG AAACAGCAAGTTGCA TERM 1111 864372 - 864357 - g 75 -5.4 -4.95758 | AGGAGATCATAAAAA TACGGC ACTT GCCATA GCTAAATCATTAAAT CLH_0835 862792 - 865338 + | putative calcium-translocating P-type ATPase, PMCA-type TERM 1112 865517 - 865553 + T 100 -13.3 -4.62475 | opp_overlap 865522, overlap 865522 TCATTAAGAGTTCTA AAAAAGTACCAATTGAG ATT TTCAATTGGTACTTTTG TTTTCATTTATAAAT TERM 1113 865548 - 865522 - T 100 -12.5 -5.04987 | opp_overlap 865517 865522 AAGAGTTCTAAAAAA GTACCAATTGA GATTT TCAATTGGTAC TTTTGTTTTCATTTA TERM 1114 865522 - 865548 + T 100 -13.2 -5.22258 | opp_overlap 865522, overlap 865517 AAGAGTTCTAAAAAA GTACCAATTGAG ATT TTCAATTGGTAC TTTTGTTTTCATTTA CLH_0836 866027 - 865596 - | hypothetical protein botR 866476 - 867021 + | transcriptional regulator BotR, P-21 CLH_0838 867014 - 867235 + | UviB homologous protein TERM 1115 867493 - 867465 - g 71 -8.4 -2.8241 | opp_overlap 867467, overlap 867464 867467 ACTACAGTGAATAAT TATCTTAATGCT AAAGA AACATTAAGATA TGATGGAGATTATAT CLH_0839 867456 - 868379 + | hypothetical protein CLH_0840 868558 - 870867 + | ATP-dependent protease TERM 1116 870904 - 870873 - f 100 -11.9 -5.85011 | opp_overlap 870873 GAAAAAGTAAAAAAA TAAGTACTAAGTT AAAGGA AACTTAGTACTTA TTTTTTTTGAAAGAT TERM 1117 870873 - 870904 + F 100 -11.9 -5.75945 | opp_overlap 870873 GAAAAAGTAAAAAAA TAAGTACTAAGTT AAAGGA AACTTAGTACTTA TTTTTTTTGAAAGAT TERM 1118 871189 - 871212 + F 90 -7.6 -5.01546 | opp_overlap 871191 ACTAAGGAGGTGAAT TACTCTAAGA AAAA TTTTAGAGTA TTTTTATATGGATTT spoIIAA 871220 - 871555 + | anti-sigma F factor antagonist spoIIAB 871572 - 872003 + | anti-sigma F factor sigF 872013 - 872768 + | RNA polymerase sigma-F factor TERM 1119 872786 - 872844 + F 89 -9.6 -4.24002 | opp_overlap 872800 872806, overlap 872806 TTAAAGATACTGATT TTTA-TAGATAATATTAAAAACAGATGA GCAAA TCATCTGTTTTTT-TATTATCTAGTAAA TTTTAAAATTTAAAA TERM 1120 872806 - 872824 + F 100 -7.5 -5.9218 | opp_overlap 872806 872800, overlap 872786 AGATAATATTAAAAA CAGATGA GCAAA TCATCTG TTTTTTTATTATCTA TERM 1121 872824 - 872806 - f 90 -7.5 -4.9181 | opp_overlap 872786 872806, overlap 872800 AGATAATATTAAAAA CAGATGA GCAAA TCATCTG TTTTTTTATTATCTA TERM 1122 873249 - 873239 - f 80 -2.6 -6.01187 | overlap 873244 AAGTAAATAAAAAAA TAAT CCA ATTA TCATAATTAAATTTT spoVAC 873360 - 873818 + | stage V sporulation protein AC TERM 1123 874148 - 874132 - g 82 -9.5 -3.34715 | opp_overlap 874122, overlap 874130 TACTTGCGGTAAAGA CAGCTTT GAA AAAGCTG AAAGTGAAATGATGT spoVAD 873974 - 874993 + | stage V sporulation protein AD spoVAE 875017 - 875373 + | stage V sporulation protein AE TERM 1124 875466 - 875413 - f 88 -12.4 -2.66787 | gap 1, opp_overlap 875405 875413 875420 875424 875431, overlap 875405 875420 875424 CTAACATTTATACTA TAATTAA-TAAATAATAATCCAGTT TTTAT AACTGGTTTATTATTTATTTAATTA TTAGTTAGGTGGGGG TERM 1125 875413 - 875466 + F 95 -12.4 -3.37344 | gap 1, opp_overlap 875405 875413 875420 875424, overlap 875405 875420 875424 875431 CTAACATTTATACTA TAATTAA-TAAATAATAATCCAGTT TTTAT AACTGGTTTATTATTTATTTAATTA TTAGTTAGGTGGGGG TERM 1126 875420 - 875458 + F 100 -12.1 -4.11412 | opp_overlap 875420 875413 875424, overlap 875413 875424 875431 TTATACTATAATTAA TAAATAATAATCCAGTT TTTAT AACTGGTTTATTATTTA TTTAATTATTAGTTA TERM 1127 875458 - 875420 - f 95 -12.1 -3.4878 | opp_overlap 875413 875420 875424 875431, overlap 875413 875424 TTATACTATAATTAA TAAATAATAATCCAGTT TTTAT AACTGGTTTATTATTTA TTTAATTATTAGTTA TERM 1128 875424 - 875454 + F 85 -8.5 -4.62392 | opp_overlap 875420 875413 875424, overlap 875420 875413 875431 ACTATAATTAATAAA TAATAATCCAGTT TTTAT AACTGGTTTATTA TTTATTTAATTATTA TERM 1129 875454 - 875424 - f 80 -8.5 -4.37199 | opp_overlap 875424 875420 875413 875431, overlap 875420 875413 ACTATAATTAATAAA TAATAATCCAGTT TTTAT AACTGGTTTATTA TTTATTTAATTATTA TERM 1130 875431 - 875447 + F 77 -6.6 -4.71584 | opp_overlap 875424 875420 875413, overlap 875424 875420 875413 TTAATAAATAATAAT CCAGTT TTTAT AACTGG TTTATTATTTATTTA CLH_0847 875487 - 878003 + | putative calcium-transporting ATPase TERM 1131 878110 - 878137 + G 100 -10 -5.46276 | ATTTTCTGATTTTAA GAAGCTTGCAAT TTTT ATTGTGAGCTTC TTTTTTATATGTGTT TERM 1132 879571 - 879548 - g 71 -4 -5.10163 | AAGGTTAAAATAAAA CAATATAAAA ACAA TTGTATATTG AAAGTTGATGAGAAA CLH_0848 878009 - 879703 + | putative competence protein holA 879733 - 880767 + | DNA polymerase III, delta subunit TERM 1133 880806 - 880775 - T 100 -8.8 -5.66338 | opp_overlap 880782, overlap 880779 880782 AAAGATAAGAAAAAA TAAATAACCCACCA AAAA TGGTGGGTTTATTA GATTACGCCATAGCG TERM 1134 880802 - 880779 - T 100 -9.6 -5.22768 | opp_overlap 880782, overlap 880775 880782 ATAAGAAAAAATAAA TAACCCACCA AAAA TGGTGGGTTT ATTAGATTACGCCAT TERM 1135 880782 - 880799 + T 100 -11.3 -4.2528 | opp_overlap 880779 880775 880782 AGAAAAAATAAATAA CCCACCA AAAA TGGTGGG TTTATTAGATTACGC TERM 1136 880799 - 880782 - T 100 -11.3 -4.61916 | opp_overlap 880782, overlap 880779 880775 AGAAAAAATAAATAA CCCACCA AAAA TGGTGGG TTTATTAGATTACGC rpsT 881072 - 880809 - | ribosomal protein S20 TERM 1137 880913 - 880927 + g 70 -5.7 -4.36127 | CTAAAGACTTAGTTA CTGCT ACGAA AGCAG TTTTAGCTTCTTCAA gpr 881390 - 882361 + | spore protease TERM 1138 882539 - 882551 + F 82 -5.5 -5.55769 | opp_overlap 882539 882523 TTACATAACAATAAA GGTGG TAG CCATC TTTTTTATTGTACAA TERM 1139 883169 - 883134 - g 95 -12.2 -3.28582 | overlap 883132 ATAACAGTGAGAAGA CTTCATTAACATTTAA CCAA TTTAATGTTAATGAAG AAAGTATATTAAAAT CLH_0852 882776 - 883843 + | stage II sporulation protein P TERM 1140 883927 - 883961 + F 77 -6.7 -4.72272 | gap 1, opp_overlap 883927 ATATTAATGAAATAA GACCATTATTTAGATA AATA TATCTAAA-GGTGGTC TTTTTAATGAGGGAA CLH_0853 883968 - 884348 + | hypothetical protein TERM 1141 884467 - 884483 + F 83 -9.5 -3.64912 | opp_overlap 884466 ATGGGGGTGACTAAG CTACCTT ATT AAGGTAG TTATATATATGAGTG lepA 884492 - 886294 + | GTP-binding protein LepA TERM 1142 886358 - 886341 - f 100 -9.9 -5.94214 | opp_overlap 886341 AACATAAGAAAAAAA GCTGACA AATT TGTCAGC TTTTTTTATCTAAAA TERM 1143 886341 - 886358 + F 100 -9.9 -5.71712 | opp_overlap 886341 AACATAAGAAAAAAA GCTGACA AATT TGTCAGC TTTTTTTATCTAAAA CLH_0855 886405 - 887544 + | putative oxygen-independent coproporphyrinogen III oxidase hrcA 887729 - 888760 + | heat-inducible transcription repressor HrcA grpE 888799 - 889422 + | co-chaperone GrpE dnaK 889502 - 891352 + | chaperone protein DnaK TERM 1144 891389 - 891415 + F 95 -11.6 -3.59979 | opp_overlap 891385 891389 TAATATAATAATTCA GAGGGAAGGCAA TGC TCGTCTTCCCTC TTTAAGGTAGAAAAC TERM 1145 891415 - 891389 - f 86 -11.6 -2.71335 | opp_overlap 891389, overlap 891385 TAATATAATAATTCA GAGGGAAGGCAA TGC TCGTCTTCCCTC TTTAAGGTAGAAAAC TERM 1146 891792 - 891829 + G 80 -8.1 -4.08394 | gap 1, opp_overlap 891797 AGAAGAAATGGACCA GTTAATGGTAATG-ATAT TGA ATATACATTAACATTAAC TTTTGAAGAAGCTGT dnaJ 891456 - 892577 + | chaperone protein DnaJ TERM 1147 892621 - 892591 - f 90 -7 -5.43974 | opp_overlap 892591 AAAATTAAACAAAAA TCGTTTCAAATTTT AAT AGAATTTGGAACGA TTTTTTTTGTAGAAT TERM 1148 892591 - 892621 + F 100 -11.4 -5.94713 | opp_overlap 892591 AAAATTAAACAAAAA TCGTTTCAAATTTT AAT AGAATTTGGAACGA TTTTTTTTGTAGAAT TERM 1149 893680 - 893666 - g 70 -2.9 -5.25803 | AATTGTTATAAAAAA TACTT GAAGG AAGTA AAGAACAAAGAAGAT CLH_0860 892868 - 894418 + | ferredoxin-nitrite reductase TERM 1150 894429 - 894464 + F 100 -10 -5.32599 | opp_overlap 894429 894461 AATAAACATATATTA GCTATTTATTTCTTGA TTTT TTGGGAAATAAATAGC TTTTTATATTTTATA TERM 1151 894487 - 894461 - f 82 -8.2 -4.41348 | opp_overlap 894429, overlap 894429 TTTTTGGGAAATAAA TAGCTTTTTATA TTT TATAAAACGCTA CAACACTATAGTTTC TERM 1152 894562 - 894593 + F 77 -3.1 -5.7946 | opp_overlap 894583 TATGAATGATAAAGT GAATTTTAATGCT GTAATA AGCAAAAAAATTC TTTTTTTATTAAGGA TERM 1153 895273 - 895259 - g 72 -7.2 -3.90112 | TGGTTTTGAAGGAAA TGTTCA AAC TGAACA TGAAAGAATGTTTAC trmB 894678 - 895337 + | tRNA (guanine-N(7)-)-methyltransferase prmA 895505 - 896446 + | ribosomal protein L11 methyltransferase CLH_0863 896539 - 897303 + | conserved surface protein CLH_0864 897303 - 898607 + | hypothetical protein CLH_0865 898810 - 899154 + | HIT family protein rpsU 899291 - 899467 + | ribosomal protein S21 CLH_0867 899497 - 899946 + | GatB/Yqey domain protein TERM 1154 899982 - 899940 - f 100 -15.4 -3.78902 | opp_overlap 899944 899947 899952, overlap 899944 899952 TAAGGAATATTTAAA TAAATAATAAAAGAACTC TCTTTTT GAGTTCTTTTATTATTTA TAAACTATACAAAAA TERM 1155 899944 - 899978 + F 100 -11.8 -3.91144 | opp_overlap 899944 899940 899952, overlap 899947 899952 GAATATTTAAATAAA TAATAAAAGAACTC TCTTTTT GAGTTCTTTTATTA TTTATAAACTATACA TERM 1156 899978 - 899944 - f 100 -11.8 -4.49906 | opp_overlap 899944 899947 899952, overlap 899940 899952 GAATATTTAAATAAA TAATAAAAGAACTC TCTTTTT GAGTTCTTTTATTA TTTATAAACTATACA TERM 1157 899947 - 899975 + F 82 -9.1 -4.08279 | opp_overlap 899944 899940 899952, overlap 899944 899952 TATTTAAATAAATAA TAAAAGAACTC TCTTTTT GAGTTCTTTTA TTATTTATAAACTAT TERM 1158 899952 - 899970 + F 70 -4.6 -5.05116 | opp_overlap 899952 899944 899940, overlap 899947 899944 AAATAAATAATAAAA GAACTC TCTTTTT GAGTTC TTTTATTATTTATAA TERM 1159 899970 - 899952 - f 73 -4.6 -5.10765 | opp_overlap 899947 899944 899952, overlap 899944 899940 AAATAAATAATAAAA GAACTC TCTTTTT GAGTTC TTTTATTATTTATAA TERM 1160 900031 - 899999 - f 100 -16.7 -5.43487 | opp_overlap 899999 AAACTATACAAAAAA TCCTTATGTTTAATA TTT TATTAAACATAAGGA TTTTTTTGTTGCGCT TERM 1161 899999 - 900031 + F 100 -16.7 -5.80364 | opp_overlap 899999 AAACTATACAAAAAA TCCTTATGTTTAATA TTT TATTAAACATAAGGA TTTTTTTGTTGCGCT yqfC 900199 - 900477 + | sporulation protein YqfC yqfD 900480 - 901610 + | sporulation protein YqfD TERM 1162 902601 - 902613 + G 77 -7.7 -4.08578 | AGCTAGAAGTATTGG TGCTG TTT CAGCA TTTCTAATTCCATTT CLH_0870 901645 - 903705 + | membrane protein containing HD superfamily hydrolase domain CLH_0871 903718 - 904218 + | hypothetical protein CLH_0872 904243 - 904944 + | diacylglycerol kinase/PAP2 family protein TERM 1163 905031 - 905073 + F 81 -10.3 -2.62396 | gap 1, opp_overlap 905027 905035, overlap 905035 TTCTAGATAAATTAG TAGATGCTCGTAAAAT-TTA TAAA TGATATTTTACGAGCATTTA TAATATAAAAAAATA TERM 1164 905035 - 905069 + F 82 -8.9 -4.0162 | gap 1, opp_overlap 905027 905035, overlap 905031 AGATAAATTAGTAGA TGCTCGTAAAAT-TTA TAAA TGATATTTTACGAGCA TTTATAATATAAAAA TERM 1165 905069 - 905035 - f 73 -8.8 -2.912 | opp_overlap 905035 905031, overlap 905027 AGATAAATTAGTAGA TGCTCGTAAAATTT ATAAATG ATATTTTACGAGCA TTTATAATATAAAAA era 905417 - 906304 + | GTP-binding protein Era recO 906329 - 907078 + | DNA repair protein RecO CLH_0875 907085 - 907702 + | UBA/TS-N domain protein CLH_0876 907745 - 908374 + | CBS domain protein TERM 1166 909054 - 909040 - g 74 -4.2 -5.2197 | overlap 909041 TATAAAAAGGAAAAA GGGGAA GAT TTCCCA CAAGATCCTAAAACT TERM 1167 909053 - 909041 - g 73 -7.7 -3.70742 | overlap 909040 ATAAAAAGGAAAAAG GGGAA GAT TTCCC ACAAGATCCTAAAAC TERM 1168 910006 - 910019 + G 72 -6.7 -4.2142 | ATTAAAACTGTTATA CCTGA AATA TCAGG TTATTTTGAAATATT TERM 1169 910753 - 910769 + G 74 -8.1 -3.65902 | GAAGCTGAATTTTTC TCATTTG GAA CAAATGA TTTAACTCAAATGAC ppdK 908464 - 911091 + | pyruvate, phosphate dikinase TERM 1170 911169 - 911117 - T 82 -8.9 -4.18058 | gap 1, opp_overlap 911131 911158 911165 911166, overlap 911131 AATTATATGTTAAAA TAAAAGATAAAAAACACGTAATGG TAAATT CCATTGCGTGTTTTTTAT-TTTAA GAATTTGTGGAATTT TERM 1171 911131 - 911156 + T 100 -9.8 -5.79595 | opp_overlap 911131 911117 ATAAAAGATAAAAAA CACGTAATGG TAAATT CCATTGCGTG TTTTTTATTTTAAGA TERM 1172 911156 - 911131 - T 100 -7.6 -5.65678 | opp_overlap 911131, overlap 911117 ATAAAAGATAAAAAA CACGTAATGG TAAATT CCATTGCGTG TTTTTTATTTTAAGA CLH_0878 912449 - 911382 - | spore coat protein S CLH_0879 912636 - 913664 + | deoxynucleotide triphosphohydrolase family protein TERM 1173 913806 - 913794 - f 88 -4.9 -5.87688 | ATAAGGTAAAAAAAA GAATT ATT AATTC AATGACATAATAAAA TERM 1174 913979 - 913956 - g 73 -5.4 -4.71463 | AAGTAAAAGAACAAA CTGATATAGT GGAT ATTATATCAG AAAGTGTAAGATTAA CLH_0880 913913 - 915691 + | putative DNA primase TERM 1175 916451 - 916437 - g 71 -7.2 -3.77136 | AGAAGAAATTTCAAA GGTAAT GGA ATTACC AGTAGATAAGGTACG rpoD 915697 - 916821 + | RNA polymerase sigma factor RpoD TERM 1176 916823 - 916842 + F 87 -6.4 -5.34555 | opp_overlap 916825, overlap 916825 ATTATTTAGATTAAA AAGCACCT TTAC AGGTGCTC TTTTTTATAGTATAA TERM 1177 916840 - 916825 - f 93 -9 -4.81551 | opp_overlap 916823 916825 TATTTAGATTAAAAA GCACCT TTAC AGGTGC TCTTTTTTATAGTAT TERM 1178 916825 - 916840 + F 84 -9 -4.30057 | opp_overlap 916825, overlap 916823 TATTTAGATTAAAAA GCACCT TTAC AGGTGC TCTTTTTTATAGTAT CLH_0882 916914 - 917600 + | Bcl-2 family protein CLH_0883 917718 - 918509 + | hypothetical protein CLH_0884 918566 - 918802 + | hypothetical protein TERM 1179 919255 - 919280 + T 100 -9.1 -5.28942 | opp_overlap 919249 919255 919258 TCGTACAAATATGAA GAACACTAGGT TAAC GTCTAGTGTTC TTTTTATTTAAACTA TERM 1180 919280 - 919255 - T 72 -7.7 -3.50335 | opp_overlap 919255, overlap 919249 919258 TCGTACAAATATGAA GAACACTAG GTTAACGT CTAGTGTTC TTTTTATTTAAACTA CLH_0885 919749 - 919288 - | phage protein TERM 1181 919670 - 919686 + g 75 -5.3 -4.98352 | opp_overlap 919676 TTCTTATATAATCCC TTAAAAT TAA ATTTTAA TTTCTTTTCTTTAAT CLH_0886 920132 - 919767 - | transcriptional regulator CLH_0887 920387 - 920896 + | hypothetical protein TERM 1182 921021 - 921044 + F 73 -6.8 -4.24948 | opp_overlap 921021 921016 GGTTATATGAGAAAA GCACTTGTAT GAAA ATATGAGTGC TTTTAACTATAATAA TERM 1183 921206 - 921229 + F 75 -6.8 -4.51174 | opp_overlap 921206 921201, overlap 921201 GGTTATATGAGAAAA GCACTTGTAT GAAA ATATGAGTGC TTTTAATTATAATAA TERM 1184 921741 - 921760 + G 100 -7.2 -5.61596 | opp_overlap 921741 GATGATGCTATGAAA CAAGGTTT TACT AAGCCTTG TTTTTTTGTGCAAGT CLH_0888 921657 - 922073 + | hypothetical protein CLH_0889 922063 - 922218 + | hypothetical protein CLH_0890 922219 - 923529 + | sheath tail protein CLH_0891 923548 - 924015 + | hypothetical protein CLH_0892 924315 - 924728 + | hypothetical protein TERM 1185 926106 - 926120 + G 72 -5.8 -4.45117 | opp_overlap 926106 926108 ATATTTGGTTATATA TACAAT CGA ATTGTA TTTATTTGGAATATA CLH_0893 924924 - 926873 + | hypothetical protein CLH_0894 926873 - 927535 + | peptidoglycan-binding LysM CLH_0895 927547 - 928518 + | hypothetical protein CLH_0896 928522 - 928851 + | phage protein TERM 1186 929183 - 929209 + G 91 -8.1 -4.82128 | opp_overlap 929183 TTTGAATATGAGAAA GACAGTGTATT AGTAA AATTCACTGTC TTTTCTATTTACTCA TERM 1187 929209 - 929183 - g 78 -8.1 -4.06384 | opp_overlap 929183 TTTGAATATGAGAAA GACAGTGTATT AGTAA AATTCACTGTC TTTTCTATTTACTCA CLH_0897 928844 - 929251 + | phage protein CLH_0898 929254 - 930312 + | hypothetical protein CLH_0899 930313 - 932394 + | hypothetical protein TERM 1188 932490 - 932468 - g 78 -2.8 -5.80248 | overlap 932460 GAAGATATAAAAAAA TACTTTCTTA ATT TAAGTAAATA TGTACCTTCTTTTAT CLH_0900 932396 - 933010 + | hypothetical protein CLH_0901 933025 - 933825 + | hypothetical protein CLH_0902 933842 - 934177 + | hypothetical protein CLH_0903 934170 - 934304 + | phage protein, XkdX family TERM 1189 934352 - 934365 + F 88 -6.7 -5.49234 | opp_overlap 934352 934338 AGGCAATAAATTAAT CACCT TTTT AGGTG TTTTTTATTGCCTCT CLH_0904 934418 - 934618 + | UviB homologous protein TERM 1190 934737 - 934727 - f 72 -4 -5.30616 | TCATGTAAATAAAAA TTAC TTA GTAA CTATGAAAGGTGAGG CLH_0905 934757 - 935551 + | glycosyl hydrolase, family 25 TERM 1191 935569 - 935618 + F 73 -6.9 -4.27617 | gap 1, opp_overlap 935569 TAGATTAAGTATATA TTTCAACTAAAGGAT-ATATGATT ATA AAAGATATTATCTTTTAGTTGAAA TTTTAATAAAATATG TERM 1192 935820 - 935834 + G 72 -5.8 -4.60949 | TTGCAAAAATATTGA TTACAA TGT TTGTAA TTTGTTTGTCATCTA CLH_0906 935699 - 935863 + | surface lipoprotein-related protein CLH_0907 936452 - 935886 - | acetyltransferase, gnat family TERM 1193 937530 - 937518 - g 75 -3.4 -5.47218 | GCTGAGTTAAAAAAA CTTG ATGTA CAAG AAGCAATGTGTTTTA CLH_0908 936819 - 937865 + | hypothetical protein CLH_0909 937884 - 938921 + | hypothetical protein TERM 1194 938960 - 938925 - f 100 -11.5 -5.1383 | opp_overlap 938930, overlap 938930 AATAATATATAAAAA TAAAATGCTACTAAA TTTAAT TTTAGTAGCATTTCA CAAAAAAAATAATAT TERM 1195 938930 - 938955 + F 83 -9.2 -3.53091 | opp_overlap 938925 938930 TATATAAAAATAAAA TGCTACTAAA TTTAAT TTTAGTAGCA TTTCACAAAAAAAAT TERM 1196 938955 - 938930 - f 100 -9.2 -5.38839 | opp_overlap 938930, overlap 938925 TATATAAAAATAAAA TGCTACTAAA TTTAAT TTTAGTAGCA TTTCACAAAAAAAAT CLH_0910 939071 - 940180 + | multiple sugar-binding transport ATP-binding protein MsmK TERM 1197 940742 - 940703 - g 78 -9.7 -3.04183 | opp_overlap 940708, overlap 940705 940708 940711 ATAACTGAAACTATA CACAATAACCTATATAA AAGATG TTATATAAGTTATTATG AAGTAAAGGATTATA CLH_0911 940202 - 941143 + | hypothetical protein CLH_0912 941305 - 942321 + | HTH-type transcriptional regulator MalR TERM 1198 943048 - 943062 + G 73 -4.4 -5.02074 | ATAAATTATTGGAAG TTTATA CAA TATAAA TTTTTTGAACAATGG malQ 942496 - 943983 + | 4-alpha-glucanotransferase TERM 1199 946074 - 946043 - g 74 -4 -5.22006 | gap 1, opp_overlap 946043 946057 TTATTATAAGAAAAA TAAGAGTAT-TAAGA GGG TGTTAGATACTCTTA TTGATGGAACTTTTG CLH_0914 943983 - 946343 + | glycogen phosphorylase TERM 1200 946543 - 946562 + F 86 -4.3 -5.86976 | opp_overlap 946543 AAGCCAATAAAAAGA GGATTCA TTAATT TGAGTCC TTTTTTATTTTCTAA TERM 1201 946986 - 946962 - g 71 -4.3 -4.92314 | ATGAATGGAGAAAAA GTGTTTTTATC TAA GATATTAACAC CGTGTGAAAATTTTA TERM 1202 948483 - 948463 - g 78 -8.3 -3.92745 | opp_overlap 948456 AAAAAGTTGCAGAAA GTGTTGGTA CAT TACCTACAC ATAATGCTATGTTTA kdpA 946860 - 948599 + | K+-transporting ATPase, A subunit kdpB 948615 - 950681 + | K+-transporting ATPase, B subunit TERM 1203 951122 - 951108 - g 74 -8.6 -3.14564 | opp_overlap 951107 951105 951108 TGACTTGTTCAGGAA GTGGAT TAG ATCCAC ATATTTCAGTTGCAG TERM 1204 951108 - 951122 + G 70 -8.6 -2.6732 | opp_overlap 951108, overlap 951107 951105 TGACTTGTTCAGGAA GTGGAT TAG ATCCAC ATATTTCAGTTGCAG kdpC 950699 - 951304 + | K+-transporting ATPase, C subunit TERM 1205 951379 - 951429 + F 100 -14.6 -4.57482 | opp_overlap 951377, overlap 951425 ATATTAACACAATCT TTATACTATAGTTAAAATAATTAT GAA ATATTTATTTTGGCTATAGTATAA TTTATTTATAAGTAG CLH_0918 951467 - 954169 + | sensor protein KdpD CLH_0919 954162 - 954869 + | KDP operon transcriptional regulatory protein KdpE prmA 955951 - 955088 - | ribosomal protein L11 methyltransferase TERM 1206 955981 - 956039 + H 100 -25.4 -4.79683 | opp_overlap 955982, overlap 955982 TATTTGAATTTATTA ATATTTTTTAGGTTAGTGTTAATATTAT ACT ATAATATTAACACTAACCTAAAAAATAA TTTGTTTTATAAATT TERM 1207 955982 - 956038 + H 100 -28.9 -3.46183 | opp_overlap 955982, overlap 955981 ATTTGAATTTATTAA TATTTTTTAGGTTAGTGTTAATATTAT ACT ATAATATTAACACTAACCTAAAAAATA ATTTGTTTTATAAAT TERM 1208 956038 - 955982 - H 100 -28.9 -3.22091 | opp_overlap 955982 955981 ATTTGAATTTATTAA TATTTTTTAGGTTAGTGTTAATATTAT ACT ATAATATTAACACTAACCTAAAAAATA ATTTGTTTTATAAAT CLH_0921 956188 - 957147 + | glycerate dehydrogenase TERM 1209 957219 - 957196 - T 78 -6 -5.02074 | opp_overlap 957196 TTACTTGTTAAAAAA TAGGCTGTCT TGTC AGGCAACCTA TTTTTTATTTGGTTA TERM 1210 957196 - 957219 + T 87 -6 -5.72053 | opp_overlap 957196 TTACTTGTTAAAAAA TAGGCTGTCT TGTC AGGCAACCTA TTTTTTATTTGGTTA CLH_0922 958168 - 957380 - | HAD hydrolase, IIB family TERM 1211 958288 - 958278 - H 70 -2.6 -5.45652 | ATTTGGAATAAAAAA TAAA ATA TTTA GTATGTAAATGTTTA TERM 1212 958360 - 958308 - H 81 -8.9 -3.91072 | opp_overlap 958318 GTAAATGTTTAGAAA GTTTAATTTATATTTCAATTATGAT AGT ATGATAGTTGAAACATAAATTAGAC ATATAGATGAAAAGA TERM 1213 958753 - 958738 - g 74 -6.2 -4.56159 | GGAAGAAAATACAAA TGCATT TATA AATGCA ATTAAGAGCGGAAGA CLH_0923 958385 - 959122 + | putative hydrolase CLH_0924 959192 - 959635 + | spermine/spermidine acetyltransferase TERM 1214 959654 - 959693 + F 75 -6.6 -4.41548 | opp_overlap 959642 AGATAAATTTTTATT TAAGGTAGAGGTATGC ATTAGTTG GCAAATTTCTACCTTA TTTTATAACCTATAA TERM 1215 960106 - 960132 + F 95 -5.9 -6.12328 | AGTTAATTCTTATTC TCCTCCATAAT CAAAA ATTAAGGGGGA TTTTTTTTATGTTAT TERM 1216 960478 - 960488 + G 84 -6.8 -5.0538 | CATTACTTTGGATGT GGCT TGC AGCC TTTTTTGGAATGGCA TERM 1217 960690 - 960709 + G 72 -6.4 -4.35518 | opp_overlap 960691, overlap 960691 GGACAAGTAAATTCA ATAGCTGC AGCA GCAGCTAA TTTTAATATACCGTT TERM 1218 960691 - 960708 + G 83 -9.9 -3.20588 | opp_overlap 960691, overlap 960690 GACAAGTAAATTCAA TAGCTGC AGCA GCAGCTA ATTTTAATATACCGT TERM 1219 960708 - 960691 - g 85 -9.9 -3.3447 | opp_overlap 960691 960690 GACAAGTAAATTCAA TAGCTGC AGCA GCAGCTA ATTTTAATATACCGT CLH_0925 960141 - 961568 + | sodium:alanine symporter family protein TERM 1220 961588 - 961610 + T 88 -8.5 -4.84146 | GTTTAAATATTTCAA GGAGTTATC TGAAT GATAGCTCC TTTGTTTTCTATAAT TERM 1221 961622 - 961677 + T 82 -10.4 -2.84103 | opp_overlap 961625 961632 961668, overlap 961625 961632 CTCCTTTGTTTTCTA TAATATTAAATTATTAATAACTAAAA TGTA TTATAATTATTAATAATTTAATATTG TATACTAAATCTTTT TERM 1222 961625 - 961674 + T 89 -9.9 -3.55714 | opp_overlap 961625 961632 961668, overlap 961622 961632 CTTTGTTTTCTATAA TATTAAATTATTAATAACTAAAA TGTA TTATAATTATTAATAATTTAATA TTGTATACTAAATCT TERM 1223 961674 - 961625 - T 93 -12.1 -3.28712 | opp_overlap 961622 961625 961632, overlap 961632 961668 CTTTGTTTTCTATAA TATTAAATTATTAATAACTAAAA TGTA TTATAATTATTAATAATTTAATA TTGTATACTAAATCT CLH_0926 961941 - 961669 - | acylphosphatase TERM 1224 961993 - 961950 - H 79 -10 -2.59797 | opp_overlap 961952 961954 961955, overlap 961947 961945 TTTTCATAAACACAC TCCCTTATGTTATAATAT GTTATAGT ATATTATAACATAAGGTA TGTAAACCTTGTGAA TERM 1225 961952 - 961991 + H 100 -14 -2.90219 | opp_overlap 961950 961947 961945, overlap 961954 961955 TTCATAAACACACTC CCTTATGTTATAATATGT TATA GTATATTATAACATAAGG TATGTAAACCTTGTG CLH_0927 962072 - 962491 + | nucleoside diphosphate kinase TERM 1226 962537 - 962588 + T 100 -18.7 -3.85786 | opp_overlap 962540 962548, overlap 962540 962548 TTTGAACGTGCCTTA TAATAAAGAAATCCTTAGATAAA GTAAAA TTTATCTAAGGATTTTTTTATTA TTTAGCTGTTTTGAT TERM 1227 962585 - 962540 - T 100 -13.8 -3.29461 | opp_overlap 962537 962540 962548, overlap 962548 GAACGTGCCTTATAA TAAAGAAATCCTTAGATAAA GTAAAA TTTATCTAAGGATTTTTTTA TTATTTAGCTGTTTT TERM 1228 962540 - 962585 + T 100 -16 -4.03611 | opp_overlap 962540 962548, overlap 962537 962548 GAACGTGCCTTATAA TAAAGAAATCCTTAGATAAA GTAAAA TTTATCTAAGGATTTTTTTA TTATTTAGCTGTTTT TERM 1229 962577 - 962548 - T 100 -11 -4.73677 | opp_overlap 962540 962537 962548, overlap 962540 CTTATAATAAAGAAA TCCTTAGATAAA GTAAAA TTTATCTAAGGA TTTTTTTATTATTTA TERM 1230 962548 - 962577 + T 100 -11 -6.01369 | opp_overlap 962548 962540, overlap 962540 962537 CTTATAATAAAGAAA TCCTTAGATAAA GTAAAA TTTATCTAAGGA TTTTTTTATTATTTA CLH_0928 963650 - 962586 - | spermidine/putrescine ABC transporter, spermidine/putrescine-binding protein TERM 1231 962748 - 962772 + g 73 -4.4 -5.14698 | opp_overlap 962735 962734, overlap 962735 AGCACCTTTGTTAGG TGTTGAATAT CCGAT ATAATCAACA TTTTGTTTTGCATTT CLH_0929 964437 - 963637 - | spermidine/putrescine transport system permease protein PotC CLH_0930 965273 - 964431 - | putrescine transport system permease protein PotH CLH_0931 966315 - 965266 - | spermidine/putrescine import ATP-binding protein PotA TERM 1232 965912 - 965924 + g 71 -4.1 -5.05782 | TGTCCACCACTTAAT GAAGT TAT GCTTC TTTTTTCAAATCCCT CLH_0932 966877 - 966338 - | DNA-binding protein CLH_0933 967244 - 968347 + | acetyltransferase, gnat family CLH_0934 968420 - 969277 + | hypothetical protein TERM 1233 969382 - 969405 + T 100 -9.8 -5.38047 | opp_overlap 969382 TATAAAATAAAAAAA TGTAATGATT AATT AATCATTACA TTTTTTGTGTACATA TERM 1234 969405 - 969382 - T 100 -9.8 -6.14618 | opp_overlap 969382 TATAAAATAAAAAAA TGTAATGATT AATT AATCATTACA TTTTTTGTGTACATA CLH_0935 970834 - 969434 - | amino acid carrier protein AlsT TERM 1235 971106 - 971159 + r 95 -12.4 -3.39923 | gap 1, opp_overlap 971095 971119, overlap 971119 GGAATTTTTTTTACT TTAATA-AAAAAAATGACACATTAA AAAGC TTAATGTGTCATTTTTTAATATTAA TTCGGTTTTAATGGT TERM 1236 971145 - 971119 - R 100 -11.8 -6.09888 | opp_overlap 971106 971119 CTTTAATAAAAAAAA TGACACATTAAA AAG CTTAATGTGTCA TTTTTTAATATTAAT TERM 1237 971119 - 971145 + r 100 -11.1 -5.28683 | opp_overlap 971119, overlap 971106 CTTTAATAAAAAAAA TGACACATTAA AAAGC TTAATGTGTCA TTTTTTAATATTAAT CLH_0936 973681 - 971156 - | membrane carboxypeptidase MrcB TERM 1238 971430 - 971443 + g 70 -5.3 -4.47456 | opp_overlap 971421, overlap 971421 AATAATGCTGGAGTA TTAGC ACCA GCTAA TTTATTGTTAAGTCT TERM 1239 973022 - 972999 - G 70 -8.3 -3.00419 | overlap 973017 ATCAAATTCAAATCA GCTGTATTT TTACTG AAATACAGC AATGAGGCAGCCTCA TERM 1240 973037 - 973025 - G 70 -7.7 -3.42659 | overlap 973017 ACTGAAATACAGCAA TGAGG CAG CCTCA ACACCGTATACTTGA TERM 1241 973842 - 973818 - g 78 -8.1 -4.03001 | TAAAAAACGAAAATA TATACCAATTA TAG TAATTAGTATA GCCCTTGTTATTGTC TERM 1242 974375 - 974359 - g 72 -7.3 -3.99353 | overlap 974373 GAGATAGTAACTAAA GTACCTG TAT CAGATAC CATTATAGTAGGTAA CLH_0937 973783 - 974430 + | sporulation protein YunB TERM 1243 974486 - 974434 - T 100 -17.6 -4.91873 | gap 1, opp_overlap 974434 CAGAGCAACTAAAAA GAAGAGTCTGTATAAAATTAGAGTT TTTA AACTC-AATTTTATACAAACCCTTC TTTTTTCTTATAATC TERM 1244 974434 - 974486 + T 100 -13.2 -5.58179 | gap 1, opp_overlap 974434 CAGAGCAACTAAAAA GAAGAGTCTGTATAAAATTAGAGTT TTTA AACTC-AATTTTATACAAACCCTTC TTTTTTCTTATAATC hpt 975050 - 974529 - | hypoxanthine phosphoribosyltransferase TERM 1245 976488 - 976472 - g 80 -5.9 -5.04356 | overlap 976474 GCAAAGAAGCAAAAA TACAAGT AGA ACTTGCA CAACTTAAATACAGA TERM 1246 976486 - 976474 - g 70 -6.3 -4.12448 | overlap 976472 AAAGAAGCAAAAATA CAAGT AGA ACTTG CACAACTTAAATACA CLH_0939 975607 - 977424 + | GTP binding protein TERM 1247 978396 - 978381 - g 89 -6.2 -5.37593 | TTTTAAATGAAAAAA GAACTT TTTT AAGTTC ATATGAAATAAAGAA CLH_0940 977663 - 978571 + | nucleotidyltransferase domain protein TERM 1248 979886 - 979870 - g 79 -3.7 -5.65177 | AGATTGAGAAAAAAA GGAGT GTATATA ACTCC AGGAATAATGTTTTT CLH_0941 978592 - 980019 + | GntR-family transcritional regulator CLH_0942 980007 - 980654 + | hypothetical protein CLH_0943 980841 - 981581 + | hypothetical protein TERM 1249 981648 - 981607 - T 100 -13.3 -3.30038 | opp_overlap 981607, overlap 981602 TACATTGAAATGGAA CACCTTTAATATTAACAAG GATT CATGTTGATATTAAAGGTG TTTTTTACATAAAAA TERM 1250 981607 - 981648 + T 100 -15.5 -5.08824 | opp_overlap 981607 981602 TACATTGAAATGGAA CACCTTTAATATTAACAAG GATT CATGTTGATATTAAAGGTG TTTTTTACATAAAAA TERM 1251 981716 - 981688 - T 78 -6.1 -4.98531 | opp_overlap 981688 981674 GTTTTAAATTAAAAA GTAACTTGCTA ATGGGGA TGGCAAGTTAC TTTGAAAATTGAAAT TERM 1252 981688 - 981716 + T 75 -8.3 -3.60971 | opp_overlap 981688, overlap 981674 GTTTTAAATTAAAAA GTAACTTGCTA ATGGGGA TGGCAAGTTAC TTTGAAAATTGAAAT TERM 1253 981899 - 981850 - T 75 -9.1 -3.28712 | gap 1, opp_overlap 981852 981859 981861 981894, overlap 981859 TTTTTCTCTTGATAA TATAAAAAATAGTAGCCATATATT ATA AATATA-AGCTACTAATCTTTATA TTAAAATATGAATTA TERM 1254 981890 - 981859 - T 100 -7.6 -5.5208 | gap 1, opp_overlap 981859 981852 981861, overlap 981850 TGATAATATAAAAAA TAGTAGCCATATATT ATA AATATA-AGCTACTA ATCTTTATATTAAAA CLH_0944 982247 - 981912 - | hypothetical protein speD 982648 - 983466 + | S-adenosylmethionine decarboxylase proenzyme CLH_0946 983482 - 984939 + | arginine decarboxylase TERM 1255 985373 - 985359 - g 70 -5.8 -4.30809 | GAAGATGGATTAAAA TTTGTT CGC AACAAA GAAAACGATTATGAC speE 984939 - 985793 + | spermidine synthase CLH_0948 985847 - 987046 + | saccharopine dehydrogenase TERM 1256 987858 - 987838 - g 71 -2.7 -5.4251 | opp_overlap 987838 TTTATATATAAAAAA TAAATATGA TGT TGATATTTA TTTGGAACCAGGTGA nspC 987140 - 988282 + | carboxynorspermidine decarboxylase TERM 1257 988329 - 988358 + T 74 -5.9 -4.60924 | opp_overlap 988329 988332 ATAATATTATAAAAA CATTACTAGAA ATTTTACA TTCTAGTAGTG TTTTTAAGAGATTTA CLH_0950 990535 - 988376 - | two-component sensor kinase TERM 1258 990136 - 990124 - G 72 -4.9 -4.94972 | opp_overlap 990124 CATTAGAATTAAAAA GATTT TGC AAATC TTCATCTAATGTTTT TERM 1259 991198 - 991180 - g 76 -4.6 -5.32944 | opp_overlap 991183, overlap 991183 GCTATAAGTAAAAAA TATCATGA TAT TCATGTTA TACATTTTGATGCTC speB 990817 - 991662 + | agmatinase TERM 1260 991745 - 991714 - T 76 -6 -4.91084 | opp_overlap 991714 AATAAAATTCAAAAA GTGTACAATAATTA ATAA TAAAGATTGTACAC TTTTTTGAATCTTAT TERM 1261 991714 - 991745 + T 80 -6 -5.17054 | opp_overlap 991714 AATAAAATTCAAAAA GTGTACAATAATTA ATAA TAAAGATTGTACAC TTTTTTGAATCTTAT CLH_0952 992862 - 991777 - | glycerol dehydrogenase TERM 1262 993332 - 993314 - g 70 -3.2 -5.30348 | opp_overlap 993315, overlap 993315 ATCTAACAATAAAAA CTTTGAAT TTA ATTCAAAT ACATTATCTAATATA TERM 1263 993452 - 993434 - g 70 -7.6 -3.35465 | opp_overlap 993438 993446, overlap 993438 993446 ATTTATAGATATTAA TAAAGAAT ATG ATTCTTTA AGAAAAGAATTTAAA TERM 1264 994380 - 994399 + G 78 -9.4 -3.02649 | opp_overlap 994380 AGAGGAACAATGGAA TCTTCAAG TAAT CTTGAAGA TGTATCTGGTAAGGT TERM 1265 994399 - 994380 - g 79 -9.4 -3.30605 | opp_overlap 994380 AGAGGAACAATGGAA TCTTCAAG TAAT CTTGAAGA TGTATCTGGTAAGGT CLH_0953 993183 - 995168 + | putative membrane-associated methyl-accepting chemotaxis protein fused to hamp domain TERM 1266 995205 - 995230 + F 77 -4.8 -5.40014 | opp_overlap 995205 995203 AAATAGTTAATAAGA GGGATAAG ATATTAAAGG CTTATCCC TTTTTATTGTTATTT CLH_0954 995378 - 996247 + | radical SAM TERM 1267 996264 - 996250 - f 71 -5.8 -4.7219 | opp_overlap 996249 996250, overlap 996262 TAGAGTAAGATAAAA GAAATT TAT AATTTC ATATATTATATAATT TERM 1268 996418 - 996392 - f 100 -8.2 -5.60864 | TATATATTAAAAAAA TAGTTATTACTA AAA TGGTAATAACTA TGAATAAAGATGATA TERM 1269 996774 - 996759 - g 72 -3.3 -5.28755 | AAAGATATTAAAAAA TAGTG GATATG CACTA GATATTACATCAAAC CLH_0955 996469 - 997050 + | hypothetical protein TERM 1270 997103 - 997142 + F 90 -5.3 -5.81622 | opp_overlap 997103 AATTTCAAACTAAAG GTTATACTATTGTTAAA TTTTAT TTTAATAACAGTATGAC TTTTTTTACTTTTAT ruvA 997324 - 997920 + | holliday junction DNA helicase RuvA ruvB 997956 - 998990 + | holliday junction DNA helicase RuvB queA 999009 - 1000034 + | S-adenosylmethionine:tRNA ribosyltransferase-isomerase tgt 1000178 - 1001317 + | queuine tRNA-ribosyltransferase TERM 1271 1001404 - 1001382 - f 100 -8 -5.43621 | opp_overlap 1001386 ATAAATCATAAAAAA TAAATAAAAT TAT ATTTTATTTA TAAACTTACGGAGGT yajC 1001426 - 1001701 + | preprotein translocase, YajC subunit TERM 1272 1001711 - 1001755 + F 100 -11.7 -4.13767 | opp_overlap 1001715, overlap 1001714 1001716 AAATAAAATCAATCA TAATGCCTCTTAATGCTTCAT AAA ATGAAGTATTGGGAGGTGTTG TTTTAAAATGGAAAA TERM 1273 1001714 - 1001752 + F 100 -11.2 -4.19746 | opp_overlap 1001715, overlap 1001711 1001716 TAAAATCAATCATAA TGCCTCTTAATGCTTCAT AAA ATGAAGTATTGGGAGGTG TTGTTTTAAAATGGA TERM 1274 1001716 - 1001750 + F 100 -13.8 -3.69506 | opp_overlap 1001715, overlap 1001714 1001711 AAATCAATCATAATG CCTCTTAATGCTTCAT AAA ATGAAGTATTGGGAGG TGTTGTTTTAAAATG CLH_0961 1001763 - 1002137 + | hypothetical protein CLH_0962 1002384 - 1004546 + | protein export protein SecD TERM 1275 1004568 - 1004607 + F 79 -7.4 -4.66609 | opp_overlap 1004576, overlap 1004572 AGATAAAATTGAATG TGAATAAACCTCCGTA GAGAAAAA TATGGAGGTTTATTGA TTTTTAAATAAAATA TERM 1276 1004572 - 1004603 + F 76 -8.2 -3.83042 | opp_overlap 1004576, overlap 1004568 AAAATTGAATGTGAA TAAACCTCCGTA GAGAAAAA TATGGAGGTTTA TTGATTTTTAAATAA CLH_0963 1004687 - 1005550 + | DHH domain protein TERM 1277 1005844 - 1005828 - g 72 -6.5 -4.42386 | GTTCCAGTTAGAAAA CCAGGTA AAT TACCAGG AGAAACTATTTCTGT apt 1005591 - 1006109 + | adenine phosphoribosyltransferase TERM 1278 1006154 - 1006173 + F 100 -12.2 -3.84451 | opp_overlap 1006154 ATAATTAGAAGAAAA GGCTGGTT AGAT AACCAGCC TTTGAATTTACAGAA TERM 1279 1006173 - 1006154 - f 100 -12.2 -4.85396 | opp_overlap 1006154 ATAATTAGAAGAAAA GGCTGGTT AGAT AACCAGCC TTTGAATTTACAGAA relA 1006216 - 1008402 + | GTP pyrophosphokinase dtd 1008414 - 1008863 + | D-tyrosyl-tRNA(Tyr) deacylase CLH_0967 1008894 - 1009496 + | metallo-beta-lactamase family protein TERM 1280 1009660 - 1009642 - g 82 -8.2 -4.48072 | overlap 1009650 ATATTGATGATAAAA TCATGAGA TTT TCCCATGA AAAATATGTAAAAGA CLH_0968 1009506 - 1010927 + | oxygen-independent coproporphyrinogen III oxidase 2 TERM 1281 1011553 - 1011542 - g 77 -3 -5.58074 | GAAGCATTAAAAAAA TTCT TAGA AGAA AATTATGAAAATCTT hisS 1010993 - 1012246 + | histidyl-tRNA synthetase aspS 1012472 - 1014271 + | aspartyl-tRNA synthetase TERM 1282 1014284 - 1014311 + T 100 -11.5 -5.1287 | opp_overlap 1014278 1014284 TAATATAAATTTAAA GCACATCATAA TTAATT TTATGATGTGC TTTTTTACATATAAG TERM 1283 1014311 - 1014284 - T 100 -11.5 -3.93009 | opp_overlap 1014284, overlap 1014278 TAATATAAATTTAAA GCACATCATAA TTAATT TTATGATGTGC TTTTTTACATATAAG CLH_0971 1015260 - 1014334 - | protein tyrosine phosphatase II superfamily protein CLH_0972 1015444 - 1016142 + | hypothetical protein CLH_0973 1016286 - 1016606 + | conserved protein YtwF TERM 1284 1016619 - 1016653 + F 93 -7.5 -5.13527 | gap 1, opp_overlap 1016608 1016616 1016619 TAGATATTAAAATAA TAAGTTATCTCAA-AT TTTA ATGTTGAGGTAACTTA TTTTATTTATTACTT TERM 1285 1016725 - 1016690 - f 95 -13 -3.42459 | opp_overlap 1016695, overlap 1016695 TATTTACAATAGGAA TATAATCTAATTAAGC AAAT ACTTAATTAGATTATA TAAGAGGTCTTTATG TERM 1286 1016695 - 1016720 + F 72 -7.8 -3.49102 | opp_overlap 1016690 1016695 ACAATAGGAATATAA TCTAATTAAG CAAATA CTTAATTAGA TTATATAAGAGGTCT TERM 1287 1016720 - 1016695 - f 76 -8.5 -3.76771 | opp_overlap 1016695, overlap 1016690 ACAATAGGAATATAA TCTAATTAAGC AAAT ACTTAATTAGA TTATATAAGAGGTCT TERM 1288 1016858 - 1016843 - g 70 -6.2 -4.15854 | AAAGGCATTGCAAAA CACTTA GAAA TAAGTG AAGCTGCTGTTTCTC TERM 1289 1017100 - 1017089 - g 85 -3 -5.93252 | opp_overlap 1017091, overlap 1017091 TGCAAAAACAAAAAA TGTT CTAA AACA GAATTAGTTAAGGAG CLH_0974 1016738 - 1017493 + | transcriptional regulator, ArsR family/dinitrogenase iron-molybdenum cofactor family protein TERM 1290 1017597 - 1017622 + F 100 -7.8 -5.69793 | opp_overlap 1017597 CTCATAACAAAAAAA GTATTGATAA TTTTAT TTATCAATAC TTTTTTGTTTGCTAT TERM 1291 1017622 - 1017597 - f 100 -7.8 -5.88565 | opp_overlap 1017597 CTCATAACAAAAAAA GTATTGATAA TTTTAT TTATCAATAC TTTTTTGTTTGCTAT hom 1017826 - 1019127 + | homoserine dehydrogenase CLH_0976 1019494 - 1020054 + | glycerol-3-phosphate responsive antiterminator glpK 1020153 - 1021649 + | glycerol kinase TERM 1292 1021717 - 1021775 + F 79 -8.4 -4.03793 | GCTTAGAGAATTAGA GTCAAGCACAAAGACGAGTTACTTAATT ATT ATTTATGTAATTTGTGTTTGTGATTGGC TCTTTTGTTATATAA TERM 1293 1022325 - 1022315 - g 80 -5.4 -5.22943 | ATTAAACTTAAAAAA GAAG TTT CTTC AATCAAAAAAGAAAA TERM 1294 1022858 - 1022829 - g 74 -8.5 -3.2396 | opp_overlap 1022824 1022832 AATCACCAGGATTAA CTTCTGCACCAGC TGTA GCTGAAGCAGTAG TTGAAATTTTAGGAA CLH_0978 1021805 - 1023235 + | glycerol-3-phosphate dehydrogenase, glpa CLH_0979 1023248 - 1024501 + | NAD CLH_0980 1024503 - 1024856 + | molybdopterin oxidoreductase, 4Fe-4S cluster-binding subunit TERM 1295 1024863 - 1024898 + T 100 -14.4 -5.79595 | gap 1, opp_overlap 1024869, overlap 1024869 GCAATCTAATATCAA TACAAATAGTGCACCAA AAT TTGGTGCACTATTT-TA TTTTTTATTTTCAGG TERM 1296 1024869 - 1024893 + T 100 -15.9 -5.58051 | opp_overlap 1024869, overlap 1024863 TAATATCAATACAAA TAGTGCACCAA AAT TTGGTGCACTA TTTTATTTTTTATTT TERM 1297 1024893 - 1024869 - T 100 -15.9 -4.27467 | opp_overlap 1024863 1024869 TAATATCAATACAAA TAGTGCACCAA AAT TTGGTGCACTA TTTTATTTTTTATTT TERM 1298 1025192 - 1025248 + T 100 -14.2 -2.93149 | opp_overlap 1025171 1025208, overlap 1025208 1025239 AGGAATATCCTATTT TAAAACTATAAAAAAATGGACTCGCA TAAAT TACGAATCCATTTTTTCATAGTTTTA TGGTTATATCCTTTA TERM 1299 1025232 - 1025208 - T 93 -7.2 -5.77632 | opp_overlap 1025192 1025208 AAAACTATAAAAAAA TGGACTCGCA TAAAT TACGAATCCA TTTTTTCATAGTTTT CLH_0981 1026633 - 1025323 - | aspartate kinase TERM 1300 1027039 - 1027084 + H 85 -8.5 -4.64861 | gap 1, opp_overlap 1027041, overlap 1027041 1027080 TAAATTAATTGGACA AAGGCGTTCGATGGATATAC TTATTTT GTATA-CCGTTGAACGCCTC TTTATTTTAAGGGGG TERM 1301 1027041 - 1027082 + H 100 -11.1 -3.93868 | gap 1, opp_overlap 1027041, overlap 1027039 1027080 AATTAATTGGACAAA GGCGTTCGATGGATATAC TTATTTT GTATA-CCGTTGAACGCC TCTTTATTTTAAGGG glnA 1027107 - 1028438 + | glutamine synthetase, type I CLH_0983 1028461 - 1029024 + | nitrogen regulator TERM 1302 1029196 - 1029177 - g 70 -2.1 -5.44119 | opp_overlap 1029177 1029180, overlap 1029180 TTTACTCCAAAAAAA CAAGGAT TATATG ATCCGTG TTTTGAACATGATGC TERM 1303 1029583 - 1029570 - g 74 -6.7 -4.28361 | opp_overlap 1029564 TCAATTTTAGGAAAA GCTTC ATTG GAAGC TATGCCTGTAATAAA TERM 1304 1030183 - 1030164 - g 79 -3.6 -5.5762 | opp_overlap 1030164, overlap 1030178 AGCAAAGAGAAAAAA GCATTTTA TGAA TATAATGC TACATTAATGGAACC CLH_0984 1029153 - 1033724 + | glutamate synthase [NADPH] large chain CLH_0985 1033736 - 1035208 + | glutamate synthase [NADPH] small chain TERM 1305 1035266 - 1035228 - f 70 -7.7 -3.31261 | opp_overlap 1035230, overlap 1035226 1035230 ATATAGCAAAAATTA TAGTAGTATTAGTTTAA TTTGT TAAAACTAATACTACTT TTTTTCTTAATTTTC TERM 1306 1035230 - 1035264 + F 100 -10.3 -5.9003 | opp_overlap 1035230 1035228 1035226 ATAGCAAAAATTATA GTAGTATTAGTTTAA TTTGT TAAAACTAATACTAC TTTTTTTCTTAATTT TERM 1307 1035264 - 1035230 - f 87 -10.3 -3.2082 | opp_overlap 1035230, overlap 1035228 1035226 ATAGCAAAAATTATA GTAGTATTAGTTTAA TTTGT TAAAACTAATACTAC TTTTTTTCTTAATTT CLH_0986 1035434 - 1036861 + | amino acid permease family protein CLH_0987 1036981 - 1037277 + | hypothetical protein TERM 1308 1037346 - 1037380 + F 95 -11 -3.78904 | opp_overlap 1037346 TAGTATTATTAGTAA GAGATAAAAAGTCTGG TTT TTAGATTTTTTATCTC TTCTTAAATTTAATG CLH_0988 1037640 - 1039265 + | hypothetical protein TERM 1309 1039318 - 1039281 - T 70 -2.8 -5.58454 | opp_overlap 1039286, overlap 1039282 1039286 TCTATATTAAAAAAA GTTAAGCTATATTGCT AAGATA AGCAATATAGCTTTTT CCTTGTAACTGAAAT TERM 1310 1039286 - 1039313 + T 100 -11.5 -4.93968 | opp_overlap 1039282 1039281 1039286 ATTAAAAAAAGTTAA GCTATATTGCT AAGATA AGCAATATAGC TTTTTCCTTGTAACT TERM 1311 1039313 - 1039286 - T 95 -11.5 -3.5915 | opp_overlap 1039286, overlap 1039282 1039281 ATTAAAAAAAGTTAA GCTATATTGCT AAGATA AGCAATATAGC TTTTTCCTTGTAACT TERM 1312 1039444 - 1039424 - T 70 -4.2 -5.04601 | opp_overlap 1039424 1039434, overlap 1039434 CTCATAAATTAAAAA TAAATTAA AAGTA TTAATTTA ATTAATACTAGATTT TERM 1313 1039452 - 1039434 - T 86 -7.6 -4.78512 | opp_overlap 1039424 1039434, overlap 1039424 AAAAATAAATTAAAA GTATTAAT TTA ATTAATAC TAGATTTTAATATTT CLH_0989 1039924 - 1039442 - | transcriptional regulator, CarD family TERM 1314 1039814 - 1039826 + g 72 -4.9 -4.81831 | ATTATTTTTTAACAT TTGTA TTA TACAA TATTTTTTTTTCTTA TERM 1315 1040069 - 1040111 + H 74 -8.9 -3.00525 | opp_overlap 1040055 1040069 1040071, overlap 1040055 1040064 1040071 ATATATTTTGTAATA TATTAATATTTATTCACTA TATAT TGGTTAATAAATATTAATA TGTAATTTAAAACAA CLH_0990 1040264 - 1041271 + | hypothetical protein CLH_0991 1041410 - 1041949 + | rubrerythrin TERM 1316 1041979 - 1042003 + F 100 -12.3 -5.05116 | opp_overlap 1041982 TGAATTATATTTATA GAAGTAGTTCT TTA AGGACTACTTC TTTTGTTATTTATAA TERM 1317 1042210 - 1042188 - f 95 -10.8 -4.17296 | opp_overlap 1042191 1042194, overlap 1042191 TTTGATATAGATAAA TAATAATAGC TAT GCTATTATTA TATAGGAAAAAATAT TERM 1318 1042191 - 1042207 + F 75 -8.1 -3.48276 | opp_overlap 1042191 1042188, overlap 1042194 GATATAGATAAATAA TAATAGC TAT GCTATTA TTATATAGGAAAAAA TERM 1319 1042207 - 1042191 - f 80 -8.1 -4.2028 | opp_overlap 1042191 1042194, overlap 1042188 GATATAGATAAATAA TAATAGC TAT GCTATTA TTATATAGGAAAAAA TERM 1320 1042441 - 1042419 - g 88 -10.8 -2.96692 | overlap 1042424 GATTATTACTATAGA TCTAATGATA ATA TATCATTAGA AGAACGAAAAAAATT TERM 1321 1042571 - 1042541 - g 71 -8.5 -2.83674 | overlap 1042538 AGAAACTATTAATCA TCCAGTATATTCA TTTGT TGAACATACTAGA ACAACTGAAACAGTT udk 1042293 - 1042904 + | uridine kinase TERM 1322 1042933 - 1042985 + T 100 -15.4 -4.00589 | opp_overlap 1042915 1042934 1042936 1042941, overlap 1042934 1042936 ATATTTATGATACAT ATATTAAAGAGCAGATGTTAAA TAATAGAAT TTTAACATCTGCTCTTTAATAA TTTCATCTGTTTTAC TERM 1323 1042934 - 1042984 + T 100 -18.9 -2.99269 | opp_overlap 1042915 1042934 1042936 1042941, overlap 1042933 1042936 TATTTATGATACATA TATTAAAGAGCAGATGTTAAA TAATAGAAT TTTAACATCTGCTCTTTAATA ATTTCATCTGTTTTA TERM 1324 1042984 - 1042934 - T 100 -18.9 -3.02947 | opp_overlap 1042933 1042934 1042936, overlap 1042915 1042936 1042941 TATTTATGATACATA TATTAAAGAGCAGATGTTAAA TAATAGAAT TTTAACATCTGCTCTTTAATA ATTTCATCTGTTTTA TERM 1325 1042982 - 1042936 - T 100 -17.1 -3.0682 | opp_overlap 1042934 1042933 1042936, overlap 1042915 1042934 1042941 TTTATGATACATATA TTAAAGAGCAGATGTTAAA TAATAGAAT TTTAACATCTGCTCTTTAA TAATTTCATCTGTTT TERM 1326 1042936 - 1042982 + T 100 -17.1 -3.03002 | opp_overlap 1042915 1042936 1042934 1042941, overlap 1042934 1042933 TTTATGATACATATA TTAAAGAGCAGATGTTAAA TAATAGAAT TTTAACATCTGCTCTTTAA TAATTTCATCTGTTT TERM 1327 1042977 - 1042941 - T 100 -12.6 -3.92267 | opp_overlap 1042936 1042934 1042933, overlap 1042936 1042934 GATACATATATTAAA GAGCAGATGTTAAA TAATAGAAT TTTAACATCTGCTC TTTAATAATTTCATC CLH_0993 1043703 - 1043095 - | hypothetical protein CLH_0994 1043952 - 1044407 + | hypothetical protein TERM 1328 1044427 - 1044457 + T 100 -12.9 -5.10497 | opp_overlap 1044431 AGATAAATTTTATGG CAAATGAATAACA CTAGA TGTTATTCATTTG TTTTTTACATGCATT TERM 1329 1044453 - 1044431 - T 75 -8.6 -3.61371 | opp_overlap 1044427 AAATTTTATGGCAAA TGAATAACAC TAG ATGTTATTCA TTTGTTTTTTACATG TERM 1330 1044519 - 1044489 - T 87 -9.9 -3.46051 | opp_overlap 1044495 1044514, overlap 1044495 GAAGAAATATATGAA CAAAAAGCGACTT GTTTA AAGTCGCTTTTTT AGTCTTTAAAAAATT TERM 1331 1044513 - 1044495 - T 100 -8.9 -5.17744 | opp_overlap 1044495, overlap 1044489 ATATATGAACAAAAA GCGACTT GTTTA AAGTCGC TTTTTTAGTCTTTAA TERM 1332 1044495 - 1044513 + T 100 -8.9 -5.32699 | opp_overlap 1044495 1044489 ATATATGAACAAAAA GCGACTT GTTTA AAGTCGC TTTTTTAGTCTTTAA CLH_0995 1046179 - 1044578 - | Na/Pi-cotransporter family protein/PhoU family protein rnz 1047248 - 1046301 - | ribonuclease Z TERM 1333 1046342 - 1046330 - G 73 -9.1 -2.72379 | TCAAGGTTTTAATTA GCCCA TCG TGGGC AACTATAGAATTATG CLH_0997 1047401 - 1048057 + | HAD hydrolase, family IA CLH_0998 1048221 - 1049369 + | putative domain of unknown function TERM 1334 1049378 - 1049405 + F 100 -11.6 -6.02914 | opp_overlap 1049378 TATGTGATTTTATAA TATAGGATATAT GTTA ATATATCCTATA TTTTTTTTATATAGA TERM 1335 1049405 - 1049378 - f 95 -11.6 -3.33162 | opp_overlap 1049378 TATGTGATTTTATAA TATAGGATATAT GTTA ATATATCCTATA TTTTTTTTATATAGA CLH_0999 1049464 - 1049847 + | hypothetical protein CLH_1000 1049837 - 1050478 + | putative normocyte binding protein 2a CLH_1001 1050478 - 1050774 + | hypothetical protein TERM 1336 1051660 - 1051648 - g 77 -4.9 -5.35721 | ATATAATAAGAAAAA GTATA CCT TATAC AGAAATTTTCAAATC TERM 1337 1051910 - 1051889 - g 73 -5.3 -4.65168 | overlap 1051891 ACCAGATTTTAAAAA TACTAATAT ACCA ATATTAGCA TATGGAAATTTTGGT TERM 1338 1052064 - 1052054 - g 78 -2.6 -5.90231 | AGAAATAGAAAAAAA TAAT TTT ATTA GTGAAAAAAGTAGAA TERM 1339 1052230 - 1052212 - g 78 -4.6 -5.39681 | ATAATGAAATAAAAA CAACAAGT AGG ACTTTTTG TGAAATATTAAAAAA TERM 1340 1052261 - 1052246 - g 77 -4.8 -5.32699 | overlap 1052260 TGAAATATTAAAAAA GATATA TCCA TATATC CAAAAAAATATTAAA CLH_1002 1050795 - 1053263 + | hypothetical protein CLH_1003 1053321 - 1053530 + | hypothetical protein TERM 1341 1053615 - 1053566 - f 82 -8.2 -4.38313 | opp_overlap 1053571, overlap 1053571 ATATTAAATTTAAAA TTAAAGTTAGGCTATCTTAA AGTTTAAATA TTAAGATAGCCTAACTTTCT TTTAAAACTTATTCA TERM 1342 1053610 - 1053571 - f 100 -12.5 -4.24432 | opp_overlap 1053571, overlap 1053566 AAATTTAAAATTAAA GTTAGGCTATCTTAA AGTTTAAATA TTAAGATAGCCTAAC TTTCTTTTAAAACTT TERM 1343 1053571 - 1053610 + F 100 -14.6 -4.66535 | opp_overlap 1053571 1053566 AAATTTAAAATTAAA GTTAGGCTATCTTAAAGT TTAA ATATTAAGATAGCCTAAC TTTCTTTTAAAACTT TERM 1344 1055461 - 1055443 - g 80 -8.9 -3.57144 | TCTTTTAGCTTTAAA TGCAGCT ATAGA AGCTGCA AGAGCTGGAGAAGCA CLH_1004 1053878 - 1055938 + | methyl-accepting chemotaxis protein TERM 1345 1055980 - 1055942 - f 71 -8.5 -3.03104 | gap 1, opp_overlap 1055940 1055935 1055934 1055942 1055945, overlap 1055939 1055936 1055945 TTTAAAATATAATTA TAAGAGTAGTAAAA-TCT TTTT AGTGTTTTACTACTCTTA ATATTAATATGTTTA TERM 1346 1055942 - 1055980 + F 81 -10.7 -2.55874 | gap 1, opp_overlap 1055942 1055939 1055936 1055945, overlap 1055940 1055935 1055934 1055945 TTTAAAATATAATTA TAAGAGTAGTAAAAT-CT TTTT AGTGTTTTACTACTCTTA ATATTAATATGTTTA TERM 1347 1055945 - 1055977 + F 70 -8 -3.41309 | gap 1, opp_overlap 1055945 1055942 1055939 1055936, overlap 1055942 1055940 1055935 1055934 AAAATATAATTATAA GAGTAGTAAAAT-CT TTTT AGTGTTTTACTACTC TTAATATTAATATGT CLH_1005 1056079 - 1056402 + | thioredoxin family protein CLH_1006 1056673 - 1056981 + | hypothetical protein TERM 1348 1056986 - 1057023 + T 93 -11.6 -3.27475 | opp_overlap 1056986 1056987 1056992, overlap 1056987 1056992 AGAATATATAACGAA TTAAAACTCTAACCAA TTAAAT TTGGTTAGAGTTTTAC TATTATAATAAAGGA TERM 1349 1057023 - 1056986 - T 95 -11.6 -3.55105 | opp_overlap 1056986 1056987 1056992, overlap 1056987 1056992 AGAATATATAACGAA TTAAAACTCTAACCAA TTAAAT TTGGTTAGAGTTTTAC TATTATAATAAAGGA TERM 1350 1057022 - 1056987 - T 100 -15.1 -2.71979 | opp_overlap 1056986 1056987 1056992, overlap 1056986 1056992 GAATATATAACGAAT TAAAACTCTAACCAA TTAAAT TTGGTTAGAGTTTTA CTATTATAATAAAGG TERM 1351 1056987 - 1057022 + T 100 -15.1 -2.56271 | opp_overlap 1056987 1056986 1056992, overlap 1056986 1056992 GAATATATAACGAAT TAAAACTCTAACCAA TTAAAT TTGGTTAGAGTTTTA CTATTATAATAAAGG TERM 1352 1057017 - 1056992 - T 100 -10.6 -4.51197 | opp_overlap 1056987 1056986 1056992, overlap 1056987 1056986 TATAACGAATTAAAA CTCTAACCAA TTAAAT TTGGTTAGAG TTTTACTATTATAAT TERM 1353 1056992 - 1057017 + T 100 -10.6 -4.47259 | opp_overlap 1056992 1056987 1056986, overlap 1056987 1056986 TATAACGAATTAAAA CTCTAACCAA TTAAAT TTGGTTAGAG TTTTACTATTATAAT ilvA 1058270 - 1057050 - | threonine dehydratase TERM 1354 1059060 - 1059049 - g 70 -3 -5.20333 | opp_overlap 1059049 GATTGATAATAAAAA TAGT AATT ACTA TTTGTCAAAGGCTTA TERM 1355 1059192 - 1059178 - g 70 -5.8 -4.38744 | opp_overlap 1059178 1059176 ATTTAGATAAAATAA TTATAG GTT CTATAA TGTTACTTGTACCAG CLH_1008 1058598 - 1059362 + | membrane spanning protein CLH_1009 1059363 - 1059821 + | membrane spanning protein TERM 1356 1059833 - 1059885 + F 75 -6.6 -4.49939 | opp_overlap 1059837, overlap 1059835 1059837 TTAAGAATAGAAAAA AATAGTAAGTGGTAATTGTATTAA ATACA TAAGTACAATTATCACTTGCTGTC TTTTATCAATTGTAT TERM 1357 1059835 - 1059883 + F 86 -9.2 -3.84906 | opp_overlap 1059837, overlap 1059833 1059837 AAGAATAGAAAAAAA TAGTAAGTGGTAATTGTATTAA ATACA TAAGTACAATTATCACTTGCTG TCTTTTATCAATTGT TERM 1358 1059837 - 1059881 + F 83 -9.6 -3.49789 | opp_overlap 1059837, overlap 1059835 1059833 GAATAGAAAAAAATA GTAAGTGGTAATTGTATTAA ATACA TAAGTACAATTATCACTTGC TGTCTTTTATCAATT TERM 1359 1060748 - 1060729 - g 100 -5.8 -6.11243 | opp_overlap 1060729 ATGCAATAAAAAAAA TGAATGCA GCAA TACATTCA ATTGATGGAGTTAAA CLH_1010 1060065 - 1060958 + | cation efflux protein CLH_1011 1062231 - 1061239 - | putative K+-dependent Na+/Ca+ exchanger homolog TERM 1360 1061355 - 1061343 - G 72 -4.9 -4.86731 | overlap 1061348 CTTTGTTAAAGAAAA CTAAT CCT ATTAG TAATAAGTTAATAAC TERM 1361 1063510 - 1063500 - g 70 -5.4 -4.55295 | GTTGCTAGAAATAAA GCAA ATG TTGC TACAGCCAATATGGC CLH_1012 1062660 - 1064216 + | ABC transporter, ATP-binding protein TERM 1362 1064385 - 1064427 + F 76 -9.4 -2.83846 | opp_overlap 1064398 1064404 1064409 1064412, overlap 1064383 1064382 1064419 1064421 TTTGCTATTTTAGTT AGGTTTGTATATATGATAAT GTA ATCATCATAGATACAAACCG TAGGTTTTGTATATA TERM 1363 1064512 - 1064488 - f 82 -10.1 -3.06133 | opp_overlap 1064483 1064488 1064498 TAATTTGTTATCTAA GCCACATAG ATTGATA CTATGTGGC TTTTTTATGCTAGAT TERM 1364 1064488 - 1064512 + F 100 -10.1 -5.31877 | opp_overlap 1064488, overlap 1064483 1064498 TAATTTGTTATCTAA GCCACATAG ATTGATA CTATGTGGC TTTTTTATGCTAGAT TERM 1365 1064563 - 1064531 - f 77 -7.8 -4.05033 | opp_overlap 1064498 1064536, overlap 1064536 TTTATGCTAGATAAA GAAAAGCCACGTAG AAACA CTATGTGGCTTTTT ATATATCAAAAATGA TERM 1366 1064536 - 1064558 + F 100 -9.9 -5.03994 | opp_overlap 1064531 1064536, overlap 1064498 GCTAGATAAAGAAAA GCCACGTAG AAACA CTATGTGGC TTTTTATATATCAAA TERM 1367 1064558 - 1064536 - f 90 -7.7 -5.05113 | opp_overlap 1064498 1064536, overlap 1064531 GCTAGATAAAGAAAA GCCACGTAG AAACA CTATGTGGC TTTTTATATATCAAA brnQ 1064592 - 1065884 + | branched-chain amino acid transport system II carrier protein TERM 1368 1066035 - 1066062 + T 100 -13.5 -4.43859 | opp_overlap 1066035 1066036, overlap 1066036 AGTGGATAAATTAAA TGCCGGCACTT ACTAAA AAGTGCCGGCG TTTTGTAGCCTTATA TERM 1369 1066062 - 1066035 - T 100 -11.3 -4.14397 | opp_overlap 1066035 1066036, overlap 1066036 AGTGGATAAATTAAA TGCCGGCACTT ACTAAA AAGTGCCGGCG TTTTGTAGCCTTATA TERM 1370 1066036 - 1066061 + T 100 -14.8 -3.25592 | opp_overlap 1066035 1066036, overlap 1066035 GTGGATAAATTAAAT GCCGGCACTT ACTAAA AAGTGCCGGC GTTTTGTAGCCTTAT TERM 1371 1066061 - 1066036 - T 100 -14.8 -3.07915 | opp_overlap 1066036 1066035, overlap 1066035 GTGGATAAATTAAAT GCCGGCACTT ACTAAA AAGTGCCGGC GTTTTGTAGCCTTAT CLH_1014 1066950 - 1066087 - | hypothetical protein CLH_1015 1067332 - 1067715 + | hypothetical protein CLH_1016 1067789 - 1067983 + | hypothetical protein TERM 1372 1068189 - 1068217 + F 100 -10.6 -4.98255 | opp_overlap 1068189, overlap 1068193 TTGTATATAAAAAAA TAAACTCTTATA ATAAC TATAAGAGTTTA TTTTTATGGTTGCGG TERM 1373 1068217 - 1068189 - f 100 -11.3 -5.71712 | opp_overlap 1068189 1068193 TTGTATATAAAAAAA TAAACTCTTATAA TAA CTATAAGAGTTTA TTTTTATGGTTGCGG TERM 1374 1068193 - 1068213 + F 83 -7 -5.00267 | opp_overlap 1068189, overlap 1068189 ATATAAAAAAATAAA CTCTTATA ATAAC TATAAGAG TTTATTTTTATGGTT glyA 1068942 - 1070177 + | serine hydroxymethyltransferase TERM 1375 1070243 - 1070204 - f 100 -11.8 -3.87925 | gap 1, opp_overlap 1070204, overlap 1070216 AACTATTAAAGAGAA GCTGTGTCAAAATAGAAAT ATA ATTTCTGTTTTGA-ACAGC TTTTTTTCATATAAT TERM 1376 1070204 - 1070243 + F 100 -14 -5.59357 | gap 1, opp_overlap 1070204 1070216 AACTATTAAAGAGAA GCTGTGTCAAAATAGAAAT ATA ATTTCTGTTTTGA-ACAGC TTTTTTTCATATAAT CLH_1019 1070468 - 1071382 + | Ser/Thr protein phosphatase family protein CLH_1020 1071430 - 1072365 + | membrane dipeptidase fabG 1072757 - 1073500 + | 3-oxoacyl-[acyl-carrier-protein] reductase TERM 1377 1073565 - 1073612 + T 100 -9 -5.67529 | gap 2, opp_overlap 1073565 TGAACAGTATAAAAA GCAAGGTAG-ATAAAAA-TATT TTAATT AATATTTTTTATACTACCTTGC TTTTTATTTTTAATT TERM 1378 1073612 - 1073565 - T 100 -9 -4.98436 | gap 2, opp_overlap 1073565 TGAACAGTATAAAAA GCAAGGTAG-ATAAAAA-TATT TTAATT AATATTTTTTATACTACCTTGC TTTTTATTTTTAATT TERM 1379 1073639 - 1073668 + T 75 -6.7 -4.52047 | overlap 1073640 1073663 AATTGTATTTTATTA TTTTTAAAGTAAG CTCC TTTACTTTAAAAG TTTTATGCTATAATA TERM 1380 1073640 - 1073667 + T 70 -8 -3.30505 | overlap 1073639 1073663 ATTGTATTTTATTAT TTTTAAAGTAAG CTCC TTTACTTTAAAA GTTTTATGCTATAAT ilvE 1074748 - 1073720 - | branched-chain amino acid aminotransferase nadE 1076799 - 1074901 - | glutamine-dependent NAD(+) synthetase TERM 1381 1076347 - 1076362 + g 73 -3.2 -5.54192 | opp_overlap 1076333 1076345 AGAAAAAATAAGATT TGTTCC AAAA GGTACA TTTTTTTGAATTGGT CLH_1024 1077100 - 1077543 + | nodulation efficiency protein D TERM 1382 1077728 - 1077716 - g 74 -2.7 -5.60993 | opp_overlap 1077692 TTTGCTAGAAAAAAA GTTTC AAC AAAAC AACAAATTTTAGATG CLH_1025 1077536 - 1078492 + | spfh domain/band 7 family protein TERM 1383 1078514 - 1078542 + F 100 -13.4 -4.81551 | ATAAAAGCAACTTTG GGCATATTAGAT TTATT ATCTAATATGCC TTTTTAGTATGCATA TERM 1384 1078633 - 1078656 + F 70 -7 -3.79668 | opp_overlap 1078633 GTGCAAATAGAAAAA TATATTTTAA ATAT TTAAAATATA TTTAGTACATTCAAT TERM 1385 1078656 - 1078633 - f 87 -7 -5.19879 | opp_overlap 1078633 GTGCAAATAGAAAAA TATATTTTAA ATAT TTAAAATATA TTTAGTACATTCAAT CLH_1026 1078918 - 1080228 + | proton glutamate symport protein TERM 1386 1080243 - 1080283 + F 100 -14.4 -4.79223 | opp_overlap 1080246, overlap 1080246 AAGTTATATTAAAAT AAAGTACCTTAAAATGAT GTGTA ATCATTTTAAGGTACTTG TTTTTAGTCATATGG TERM 1387 1080280 - 1080246 - f 100 -16.1 -4.75288 | opp_overlap 1080246 1080243 TTATATTAAAATAAA GTACCTTAAAATGAT GTGTA ATCATTTTAAGGTAC TTGTTTTTAGTCATA TERM 1388 1080246 - 1080280 + F 100 -16.1 -4.49314 | opp_overlap 1080246, overlap 1080243 TTATATTAAAATAAA GTACCTTAAAATGAT GTGTA ATCATTTTAAGGTAC TTGTTTTTAGTCATA TERM 1389 1080990 - 1080970 - g 71 -7 -3.73587 | overlap 1080983 AACAGATTTAAAAGA TCAATTTG AATTA CAAATTGA AAATTTACAAAATGC CLH_1027 1080509 - 1081030 + | putative lipoprotein TERM 1390 1081157 - 1081104 - Tf 100 -18.7 -3.09671 | opp_overlap 1081109 1081115, overlap 1081109 AGCTTAATTCTAATA TAAAATTGAAAGGCTCAATAAATAT GTAA AAATTTATTGAGCCTTTCAATTATA AATATAATAACACAC TERM 1391 1081109 - 1081152 + TF 100 -18.6 -3.40299 | opp_overlap 1081109 1081104, overlap 1081115 AATTCTAATATAAAA TTGAAAGGCTCAATAAATAT GTAA AAATTTATTGAGCCTTTCAA TTATAAATATAATAA TERM 1392 1081152 - 1081109 - Tf 100 -18.6 -4.6821 | opp_overlap 1081109 1081115, overlap 1081104 AATTCTAATATAAAA TTGAAAGGCTCAATAAATAT GTAA AAATTTATTGAGCCTTTCAA TTATAAATATAATAA TERM 1393 1081115 - 1081146 + TF 95 -11.8 -3.81339 | opp_overlap 1081109 1081104, overlap 1081109 AATATAAAATTGAAA GGCTCAATAAATAT GTAA AAATTTATTGAGCC TTTCAATTATAAATA TERM 1394 1081264 - 1081223 - Tf 70 -3.9 -5.1356 | gap 1, opp_overlap 1081224 1081259, overlap 1081224 GGTTAGGAATAAAAA GGCAGAGTATAAGGAA-ACA ATA TATATTCTTTATACCCTGCT TTTGTAGGTGTTTAA TERM 1395 1081224 - 1081263 + TF 72 -5.9 -4.48877 | opp_overlap 1081223 1081224, overlap 1081259 GTTAGGAATAAAAAG GCAGAGTATAAGGAA ACAATATATA TTCTTTATACCCTGC TTTTGTAGGTGTTTA TERM 1396 1081263 - 1081224 - Tf 70 -7.4 -3.67413 | gap 1, opp_overlap 1081224 1081259, overlap 1081223 GTTAGGAATAAAAAG GCAGAGTATAAGGAA-ACA ATA TATATTCTTTATACCCTGC TTTTGTAGGTGTTTA CLH_1028 1082725 - 1081337 - | Na+ driven multidrug efflux pump CLH_1029 1082700 - 1082819 + | hypothetical protein CLH_1030 1082816 - 1083628 + | MerR-family transcriptional regulator TERM 1397 1083909 - 1083866 - f 75 -8.5 -3.60475 | opp_overlap 1083865 1083863 1083866 1083872, overlap 1083853 AATAAATTTGTTAAA TTCAAATAAAGTGGCTA AGTGTATGTA TAGTCACTTTATTTGAA GTGTATTAATTAAAT TERM 1398 1083866 - 1083909 + F 81 -10.7 -2.50966 | opp_overlap 1083853 1083866, overlap 1083865 1083863 1083872 AATAAATTTGTTAAA TTCAAATAAAGTGGCTA AGTGTATGTA TAGTCACTTTATTTGAA GTGTATTAATTAAAT CLH_1031 1084054 - 1084860 + | amino acid ABC transporter, substrate-binding protein CLH_1032 1084876 - 1085517 + | L-cystine transport system permease protein TcyB CLH_1033 1085534 - 1086214 + | ATP-binding protein CLH_1034 1086365 - 1086520 + | hypothetical protein TERM 1399 1086575 - 1086527 - f 77 -7.7 -4.05991 | opp_overlap 1086533, overlap 1086531 1086533 AACAGATAGTAGAAA TTAACAGCTACTAAAAAATGATT TTA ATTCATTTTTTAGTAGCTTTTTT GATGTTTATTTAAAT TERM 1400 1086571 - 1086531 - f 95 -12.9 -3.64299 | opp_overlap 1086533, overlap 1086527 1086533 GATAGTAGAAATTAA CAGCTACTAAAAAATGATT TTA ATTCATTTTTTAGTAGCTT TTTTGATGTTTATTT TERM 1401 1086569 - 1086533 - f 100 -15.5 -3.38986 | opp_overlap 1086533, overlap 1086531 1086527 TAGTAGAAATTAACA GCTACTAAAAAATGATT TTA ATTCATTTTTTAGTAGC TTTTTTGATGTTTAT TERM 1402 1086533 - 1086569 + F 100 -15.5 -5.34055 | opp_overlap 1086533 1086531 1086527 TAGTAGAAATTAACA GCTACTAAAAAATGATT TTA ATTCATTTTTTAGTAGC TTTTTTGATGTTTAT CLH_1035 1086625 - 1087881 + | voltage gated chloride channel family CLH_1036 1087985 - 1088875 + | oxidoreductase YdhF TERM 1403 1088917 - 1088943 + F 100 -9.6 -5.56568 | opp_overlap 1088917 AATATACGTAAAAAA GAGGTTGATT AATTGAA AATCAACCTC TTTTTTTAATAATAT TERM 1404 1088943 - 1088917 - f 100 -9.6 -5.15381 | opp_overlap 1088917 AATATACGTAAAAAA GAGGTTGATT AATTGAA AATCAACCTC TTTTTTTAATAATAT TERM 1405 1089555 - 1089543 - g 72 -3.5 -5.19275 | ATTGATAAAATAAAA TTATA TTA TATAA ACCCAGTCGATTCAA TERM 1406 1091998 - 1091982 - g 93 -5.3 -5.92337 | ATATATGAAAAAAAA TTAAATA GCG TATTTAA GATAAAAACTGAAGA CLH_1037 1089135 - 1092881 + | phosphoribosylformylglycinamidine synthase purE 1093290 - 1093769 + | phosphoribosylaminoimidazole carboxylase, catalytic subunit purC 1093769 - 1094476 + | phosphoribosylaminoimidazole-succinocarboxamide synthase TERM 1407 1094540 - 1094526 - f 70 -4.4 -5.01422 | overlap 1094538 TTATATAAAAATAAA TTATTT AGA AAATAA TATAAATTTTACATT purF 1094619 - 1096019 + | amidophosphoribosyltransferase purM 1096029 - 1097030 + | phosphoribosylformylglycinamidine cyclo-ligase purN 1097018 - 1097632 + | phosphoribosylglycinamide formyltransferase purH 1097782 - 1099287 + | bifunctional purine biosynthesis protein PurH purD 1099539 - 1100789 + | phosphoribosylamine--glycine ligase TERM 1408 1100834 - 1100867 + T 100 -10.5 -5.14965 | opp_overlap 1100838, overlap 1100838 TTGATAATGATTAAG AAAAGGTTACAACAG GATT TTGTTGTAACCTTTA TTTTTTAGTACCAAT TERM 1409 1100838 - 1100863 + T 100 -11.3 -5.0917 | opp_overlap 1100838, overlap 1100834 TAATGATTAAGAAAA GGTTACAACAG GATT TTGTTGTAACC TTTATTTTTTAGTAC TERM 1410 1100863 - 1100838 - T 100 -10.6 -4.75219 | opp_overlap 1100834 1100838 TAATGATTAAGAAAA GGTTACAACA GGATTT TGTTGTAACC TTTATTTTTTAGTAC CLH_1045 1101361 - 1100888 - | hypothetical protein TERM 1411 1101329 - 1101351 + g 70 -5.8 -4.42386 | AGTTATATTAAGTTT TTTATGATAA TTA TTATTATAAA TTTTGTACATAAAAA TERM 1412 1101553 - 1101577 + r 100 -10.1 -4.95618 | opp_overlap 1101553 TAATGATTAAGAAAA GGTTGCAACAG ATT TTGTTGTAACC TTTATTTTTAGTGTT TERM 1413 1101577 - 1101553 - R 81 -7.2 -4.75219 | opp_overlap 1101553 TAATGATTAAGAAAA GGTTGCAACA GATTT TGTTGTAACC TTTATTTTTAGTGTT CLH_1046 1102041 - 1101601 - | hypothetical protein TERM 1414 1102235 - 1102260 + r 90 -7.7 -4.94262 | opp_overlap 1102235 TAATGATTAAGAAAA GGTTACAAC AGGATTTG GTTGTAACC TTTATTTTTAGTGTC TERM 1415 1102260 - 1102235 - R 86 -7.7 -4.75219 | opp_overlap 1102235 TAATGATTAAGAAAA GGTTACAAC AGGATTTG GTTGTAACC TTTATTTTTAGTGTC CLH_1047 1102757 - 1102284 - | hypothetical protein TERM 1416 1102725 - 1102747 + g 70 -5.8 -4.42386 | AGTTATATTAAGTTT TTTATGATAA TTA TTATTATAAA TTTTGTACATAAAAA CLH_1048 1102910 - 1106302 + | hypothetical protein TERM 1417 1106421 - 1106392 - f 100 -8.1 -6.23545 | opp_overlap 1106392 GGTAAATAAAAAAAA GGAATTCAATT TAAATAAG AATTGAATTCC TTTTTTATGTATATT TERM 1418 1106392 - 1106421 + F 100 -8.8 -5.46276 | opp_overlap 1106392 GGTAAATAAAAAAAA GGAATTCAATTT AAATAA GAATTGAATTCC TTTTTTATGTATATT TERM 1419 1106535 - 1106547 + F 86 -2.7 -6.38492 | TTTTATTAATAATTG TATGT ACT GCATA TTTTTTTTTATTAGT CLH_1049 1106780 - 1107994 + | hypothetical protein CLH_1050 1107995 - 1109410 + | CoA-binding domain protein TERM 1420 1109540 - 1109574 + F 77 -6.5 -4.67173 | overlap 1109537 TATATAAATAATGGA GGAGAATCAAGTCTA AACAA TGGATGTGGTTCTCC TTATTTTTTACGTTC TERM 1421 1109908 - 1109926 + G 71 -2.4 -5.45813 | overlap 1109893 1109910 GGTGATACTGAGTAT TATCTTTC ATT GGAAGAAA TTTTATTTTTTGATA CLH_1051 1109749 - 1110204 + | transcriptional regulator, LytR family CLH_1052 1110206 - 1110904 + | hypothetical protein TERM 1422 1111019 - 1110973 - T 100 -14.3 -4.88895 | gap 1, opp_overlap 1110982, overlap 1110982 AAATAAATAAATAAA TAAATAAAAGGTTGTCCAAAAT TAAA ATTTTAGACAACCTTTT-TTTA TACAATTTAATATGA TERM 1423 1111011 - 1110982 - T 100 -13.1 -5.24515 | opp_overlap 1110982, overlap 1110973 AATAAATAAATAAAA GGTTGTCCAAAAT TAAA ATTTTAGACAACC TTTTTTTATACAATT TERM 1424 1110982 - 1111011 + T 100 -10.9 -5.63504 | opp_overlap 1110982 1110973 AATAAATAAATAAAA GGTTGTCCAAAAT TAAA ATTTTAGACAACC TTTTTTTATACAATT CLH_1053 1111879 - 1111037 - | DegV family protein CLH_1054 1112015 - 1112593 + | putative transcriptional regulator, AcrR family CLH_1055 1114584 - 1112695 - | ABC transporter, permease component TERM 1425 1113573 - 1113583 + g 71 -2.6 -5.43487 | opp_overlap 1113573 TATTATTATCATAAT TATT TAT AATA TTTTTTATGTCATTT TERM 1426 1113701 - 1113684 - G 86 -9.9 -3.52204 | opp_overlap 1113681 1113681, overlap 1113672 1113669 1113680 CCATTTGTAAAGCAA CAGCTGT ACCA ACAGCTG TAAGTGTTGTAGCAG TERM 1427 1114455 - 1114433 - G 70 -7.8 -3.37028 | ATTAACATGTTAGAA GCACCTAAAA TAT TTTTAGTTGC AGCATCTGAGTATTC CLH_1056 1115335 - 1114586 - | bacitracin export ATP-binding protein BceA TERM 1428 1115464 - 1115447 - R 100 -8.5 -5.71712 | opp_overlap 1115447 TGTTAGATAAAAAAA TCCTACA TTTC TGTAGGA TTAGGTATTGAAAAA TERM 1429 1115447 - 1115464 + r 72 -8.5 -3.1855 | opp_overlap 1115447 TGTTAGATAAAAAAA TCCTACA TTTC TGTAGGA TTAGGTATTGAAAAA CLH_1057 1117009 - 1115465 - | putative ABC transporter, permease protein TERM 1430 1115583 - 1115571 - G 84 -3.5 -5.83226 | AATGGAACAAAAAAA TAAAT TGT ATTTA TAAAGTAAGAGGAGA TERM 1431 1116588 - 1116570 - G 73 -4.6 -5.13016 | opp_overlap 1116574, overlap 1116574 AATGAAAAGGAAAAA TGAATCCA CAT TGGATTTA TATCAAATAATGAGC CLH_1058 1117766 - 1116999 - | bacitracin export ATP-binding protein BceA TERM 1432 1117511 - 1117531 + g 83 -10.5 -2.78211 | opp_overlap 1117499, overlap 1117510 TAATTCCAATATTTT CCCTTCTAA ATC TTGGAAGGG CTCTTTTGGGAAGGT TERM 1433 1117705 - 1117684 - G 79 -6.6 -4.74103 | opp_overlap 1117684 TCCTGAACTGAAAAA CTAAGACC ATTTAA GGCCTTAG TAATATTTTTTCTTC CLH_1059 1118807 - 1117776 - | two-component sensor kinase TERM 1434 1118020 - 1118040 + g 70 -2 -5.4833 | gap 1, overlap 1118022 CCGTTGTCTTTTATA TTCAATACA ATGT TGT-TTGAA TTTTTTATTACATAA CLH_1060 1119472 - 1118804 - | DNA-binding response regulator TERM 1435 1120035 - 1120025 - g 71 -4 -5.1764 | opp_overlap 1120025 1120019, overlap 1120019 TATAGAAGATAAAAA GAAA AAG TTTC TATTTATAATTCTAA TERM 1436 1120094 - 1120116 + G 90 -3.4 -5.98675 | overlap 1120098 TACAGAAGCATCTAT TTTTGGTTTC GTT GAAACCTTAA TTTTTTATTTTTGTA TERM 1437 1120098 - 1120112 + G 81 -8.6 -4.09805 | overlap 1120094 GAAGCATCTATTTTT GGTTTC GTT GAAACC TTAATTTTTTATTTT TERM 1438 1120153 - 1120139 - g 78 -7.2 -4.52589 | opp_overlap 1120139 1120138 TTTTTGTAGAGAAAA GAAAGT TTT ACTTTC ATTATTATTTGTAAG CLH_1061 1119687 - 1120382 + | putative F pilin acetylation protein TERM 1439 1120391 - 1120426 + F 80 -9.4 -3.21912 | opp_overlap 1120389 1120391 1120397, overlap 1120397 AATGTAAGTATAAGA TGATAACTAAAATA TTAGCATC TATTTTAGTTATCA TTAATAGATTAAAGA TERM 1440 1120426 - 1120391 - f 82 -9.4 -3.34062 | opp_overlap 1120391 1120397, overlap 1120389 1120397 AATGTAAGTATAAGA TGATAACTAAAATA TTAGCATC TATTTTAGTTATCA TTAATAGATTAAAGA TERM 1441 1120790 - 1120820 + G 75 -8.4 -3.35679 | TGCAGTGAAGGGTAT GGTAACAAATTACT TAA AGAAATTAGTTACC TTATAAATAAGAACA TERM 1442 1121225 - 1121247 + G 71 -8 -3.30771 | opp_overlap 1121225 1121224 1121227 1121233 CAATGGTTTTTAAAT TATTTAAATA CAA TATTTAAATA TTATACAGAATGTGA TERM 1443 1121386 - 1121400 + G 73 -4.4 -5.04325 | ATATGTATGGACTGC TAATTA TCA TAATTA TTTTTGTGATTTGAA CLH_1062 1120676 - 1121497 + | hypothetical protein TERM 1444 1121802 - 1121786 - g 73 -3 -5.38054 | gap 1, overlap 1121787 TTCTACAAAGAAAAA GGATTCG ATAA CGAA-CC AACAAGATGTGCAGC CLH_1063 1121702 - 1121854 + | hypothetical protein TERM 1445 1121893 - 1121871 - f 90 -10.7 -3.45849 | opp_overlap 1121871 TTTAGATTATTATAA GGTTGTAGT TTTAT ACTACAACC TTTTTTGTCGTTTAT TERM 1446 1121871 - 1121893 + F 100 -10.7 -5.43621 | opp_overlap 1121871 TTTAGATTATTATAA GGTTGTAGT TTTAT ACTACAACC TTTTTTGTCGTTTAT CLH_1064 1122223 - 1122903 + | alkaline phosphatase synthesis transcriptional regulatory proteinphoP CLH_1065 1123003 - 1124370 + | two-component sensor histidine kinase TERM 1447 1124486 - 1124471 - g 77 -6.2 -4.73635 | opp_overlap 1124470, overlap 1124475 CATAAGTGAAGAAAA TTAGCT TAAA AGCTAA GATTATAGGCATATA TERM 1448 1124841 - 1124811 - g 78 -8.6 -3.86252 | TGGTATGAAAGATAA GTTTAAAATAAG TGATGTG CTTATTTTAAAC AATCGAATGTATCAT CLH_1066 1124461 - 1125297 + | hypothetical protein CLH_1067 1125329 - 1126378 + | ABC transporter substrate-binding protein TERM 1449 1127205 - 1127227 + G 70 -6.4 -4.21314 | overlap 1127206 ATGTTTATAGTTCCA TCAATAATAG CAG CTGTTATTGG TTTTACAATGTTATT TERM 1450 1127678 - 1127690 + G 70 -7.7 -3.45571 | AAATGTCTCATTATG TGCTC TTG GAGCA TTAATATTTGGACCA CLH_1068 1126605 - 1128023 + | hexose phosphate transport protein TERM 1451 1128152 - 1128180 + F 100 -9 -5.54264 | opp_overlap 1128139 AATAAAATTTTATTT TATGCAGTTGTT TTTTT ATCAACTGCATA TTTTTTTAGATATTT TERM 1452 1128327 - 1128282 - f 100 -12.3 -4.74103 | opp_overlap 1128293, overlap 1128286 GTTTTAATTGAAAAA TAGACTTAAGAGTATATTAAT AATT ATTAATATACTCTTAAGGATA ATCATGATTATAATA TERM 1453 1128323 - 1128286 - f 100 -17.5 -3.57648 | opp_overlap 1128293, overlap 1128282 TAATTGAAAAATAGA CTTAAGAGTATATTAAT AATT ATTAATATACTCTTAAG GATAATCATGATTAT TERM 1454 1128293 - 1128316 + F 71 -8.4 -3.04792 | opp_overlap 1128286 1128282 AAAATAGACTTAAGA GTATATTAAT AATT ATTAATATAC TCTTAAGGATAATCA CLH_1069 1128411 - 1129508 + | hypothetical protein TERM 1455 1129619 - 1129655 + F 100 -7.5 -5.49579 | opp_overlap 1129619 ATATATTATAATAAA TGCTTTTCTAATGAC GAAATAA GTTTTTAGAAAAGCA TTTTGTTTTTTGTAA CLH_1070 1130227 - 1131276 + | hypothetical protein panE 1131312 - 1132241 + | 2-dehydropantoate 2-reductase TERM 1456 1132285 - 1132258 - f 100 -11.6 -5.04385 | opp_overlap 1132258 TATAGTTTTAAAAAA GTTGATTATTAT TTTA ATAATAATCAAC TTTTTTTATATTATT TERM 1457 1132258 - 1132285 + F 100 -11.6 -5.86465 | opp_overlap 1132258 TATAGTTTTAAAAAA GTTGATTATTAT TTTA ATAATAATCAAC TTTTTTTATATTATT TERM 1458 1132538 - 1132524 - g 71 -8.6 -2.80583 | overlap 1132523 1132526 GATTAAAAAAGATAG CAGCTA AAA TAGCTG AAGACGAGCTGAAGC CLH_1072 1132463 - 1132885 + | transcriptional regulator, MarR family TERM 1459 1132978 - 1132942 - f 100 -12.6 -3.88062 | opp_overlap 1132942 ATATATTATAGTAAA TGCTTTTCTAATAACT AAATA AGTTGTTAGAAAAGCA TTTTATTTTTGCAAC TERM 1460 1132942 - 1132978 + F 100 -14.8 -5.26119 | opp_overlap 1132942 ATATATTATAGTAAA TGCTTTTCTAATAACT AAATA AGTTGTTAGAAAAGCA TTTTATTTTTGCAAC TERM 1461 1133414 - 1133402 - g 72 -4.9 -5.00027 | ACTAAAAAGAGAAAA TGTTT TTA AAACA TGGATAACAAAAATA CLH_1073 1133163 - 1133726 + | RNA polymerase sigma-70 factor, family TERM 1462 1134298 - 1134284 - g 70 -5 -4.77036 | opp_overlap 1134284 TTTCATCACTAAAAA CATCTA TTC CAGATG AGTTTATATTTCAAG CLH_1074 1133719 - 1134789 + | hypothetical protein TERM 1463 1135032 - 1135063 + F 70 -3.8 -5.24799 | opp_overlap 1135032 AGAGCTTAAAAGAAA TAGTAGCGTCAT AATTGAAA GTGAAGCTACTA TTTTTGTATTTATAA CLH_1075 1135200 - 1135760 + | membrane protein, DedA family CLH_1076 1135919 - 1136845 + | conserved protein, tetratricopeptide repeat family protein CLH_1077 1137029 - 1137532 + | hypothetical protein TERM 1464 1137632 - 1137596 - T 100 -14 -5.18726 | opp_overlap 1137571 1137596 TTTTCACAATAAAAA GCTATTACTTAACTGG GTTGT CCAATCAAGTAATAGC TTTATTGTTATTTTA TERM 1465 1137596 - 1137632 + T 100 -10.3 -4.66418 | opp_overlap 1137596, overlap 1137571 TTTTCACAATAAAAA GCTATTACTTAACTGGG TTG TCCAATCAAGTAATAGC TTTATTGTTATTTTA CLH_1078 1138302 - 1137652 - | putative lipoprotein TERM 1466 1138085 - 1138101 + g 79 -3.7 -5.59534 | opp_overlap 1138085 TCTTCAGTGTATATA GAAAATG CTT CAGTTTC TTTTTTATTATCATT CLH_1079 1138553 - 1139002 + | MarR-family transcriptional regulator TERM 1467 1139212 - 1139195 - g 70 -8.5 -2.73159 | overlap 1139194 TTAAGGCCGCTAAAG TTGCTCT TGAA AGAGCAA AAATTGATTCTGAAA fabH 1139017 - 1139985 + | 3-oxoacyl-(acyl-carrier-protein) synthase III TERM 1468 1140253 - 1140241 - g 77 -4.9 -5.24416 | GAATTAGAAGAAAAA TTTGA TAT TCAAA TAGAAGAAGTTGAAA CLH_1081 1140100 - 1140324 + | acyl carrier protein homolog TERM 1469 1140348 - 1140383 + F 77 -7.7 -4.11404 | overlap 1140353 ATATTAACATCCAAG TTAAGTCGGGTATGC AAATAA GTATTCCCGATTTAA TTTATATAATGTAAG CLH_1082 1140434 - 1141375 + | putative enoyl-(acyl-carrier-protein) reductase II fabD 1141368 - 1142309 + | malonyl CoA-acyl carrier protein transacylase fabG 1142330 - 1143070 + | 3-oxoacyl-[acyl-carrier-protein] reductase fabF 1143088 - 1144329 + | 3-oxoacyl-[acyl-carrier-protein] synthase 2 TERM 1470 1144384 - 1144362 - g 75 -7.2 -4.07678 | opp_overlap 1144366, overlap 1144365 1144378 TTTCAAAATATTAAA GAACTTATAA ATA TTATAAATTC TTCGGATTTAGCTTA accB 1144341 - 1144835 + | acetyl-CoA carboxylase, biotin carboxyl carrier protein fabZ 1144841 - 1145269 + | beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ TERM 1471 1145741 - 1145730 - g 78 -4.4 -5.42259 | overlap 1145734 GTATTGCTAAAAAAA TAGG TTAT CCTA TAATGATAAAAGCAG accC 1145279 - 1146631 + | acetyl-CoA carboxylase, biotin carboxylase accD 1146624 - 1147499 + | acetyl-CoA carboxylase, carboxyl transferase, beta subunit accA 1147492 - 1148316 + | acetyl-CoA carboxylase, carboxyl transferase, alpha subunit TERM 1472 1148346 - 1148371 + F 100 -13.5 -5.32944 | opp_overlap 1148346 TGATTTTTAATATAA GCTCAAAAGAT TGCA ATCTTTTGAGC TTTTTTGATTATACA TERM 1473 1148371 - 1148346 - f 100 -13.5 -3.66784 | opp_overlap 1148346 TGATTTTTAATATAA GCTCAAAAGAT TGCA ATCTTTTGAGC TTTTTTGATTATACA CLH_1091 1148498 - 1149439 + | hypothetical protein CLH_1092 1149473 - 1149886 + | HutP superfamily TERM 1474 1150021 - 1150062 + F 100 -14.2 -5.18726 | opp_overlap 1150026 1150045, overlap 1150045 TTACTTATATTGTTA GGATAGATATTAAGATAA GAAGAG TTATTTTAATATCTATCC TTTTTATTATAGAGA CLH_1093 1150307 - 1151107 + | oxidoreductase, short chain dehydrogenase/reductase family TERM 1475 1151428 - 1151413 - f 74 -6.2 -4.67608 | overlap 1151422 TATTTTAATATAAAA GCAAAT AGAT ATTTGC TAAAATAATAAAATG CLH_1094 1151498 - 1152514 + | ABC transporter, substrate-binding lipoprotein CLH_1095 1152517 - 1153419 + | ABC transporter integral membrane protein TERM 1476 1153838 - 1153826 - gf 72 -7.7 -3.48822 | TATAATAAGGTACAA CTCCT TTC AGGAG GACAAAGACAAGCAC TERM 1477 1153921 - 1153890 - gf 74 -8.8 -2.95113 | opp_overlap 1153893, overlap 1153889 1153892 TGTCAAAACCTAAAT TATTGCTGCTGGAT GAAC ATACAGCAGCATTA GATCCTAAAACATCT TERM 1478 1153893 - 1153918 + GF 85 -10.5 -3.09516 | opp_overlap 1153892 1153890 1153889 CAAAACCTAAATTAT TGCTGCTGGAT GAAC ATACAGCAGCA TTAGATCCTAAAACA CLH_1096 1153385 - 1154179 + | phosphonates import ATP-binding protein PhnC 2 TERM 1479 1154224 - 1154256 + F 100 -19.5 -5.15167 | opp_overlap 1154224 TATAAGTTGAAAAAA TAGCGCTAATTATCA ATT TGATAATTAGCGCTA TTTTTATTCATAGTA TERM 1480 1154256 - 1154224 - f 100 -19.5 -5.11033 | opp_overlap 1154224 TATAAGTTGAAAAAA TAGCGCTAATTATCA ATT TGATAATTAGCGCTA TTTTTATTCATAGTA TERM 1481 1154294 - 1154316 + F 72 -7.8 -3.48807 | opp_overlap 1154291 1154295 1154297 1154307, overlap 1154287 1154295 1154297 AATCTTATATAATAG AGACTTATCA AAA TGATAAGTCA TTATCACTTTGATAA TERM 1482 1154295 - 1154315 + F 83 -11.3 -2.68802 | opp_overlap 1154291 1154295 1154297 1154307, overlap 1154294 1154287 1154297 ATCTTATATAATAGA GACTTATCA AAA TGATAAGTC ATTATCACTTTGATA TERM 1483 1154315 - 1154295 - f 90 -11.3 -3.22886 | opp_overlap 1154295 1154294 1154287 1154297, overlap 1154291 1154297 1154307 ATCTTATATAATAGA GACTTATCA AAA TGATAAGTC ATTATCACTTTGATA TERM 1484 1154332 - 1154297 - f 87 -10.8 -3.17443 | opp_overlap 1154297 1154295 1154294 1154287, overlap 1154295 1154291 1154307 CTTATATAATAGAGA CTTATCAAAATGATAA GTCA TTATCACTTTGATAAA CAATTATTTTTATAG CLH_1097 1154567 - 1157122 + | selenium-dependent molybdenum hydroxylase 1 TERM 1485 1157134 - 1157167 + F 85 -10.5 -3.03619 | opp_overlap 1157133 1157134, overlap 1157135 ATAATGTTATAAAAG GGATATACTATCTTA AGTT TTAGATGGTATATCC TATTAAAGAATAATT TERM 1486 1157167 - 1157134 - f 72 -8.3 -3.25592 | opp_overlap 1157134 1157135, overlap 1157133 ATAATGTTATAAAAG GGATATACTATCTTA AGTT TTAGATGGTATATCC TATTAAAGAATAATT CLH_1098 1157208 - 1157885 + | hypothetical protein CLH_1099 1157885 - 1158907 + | molybdopterin biosynthesis protein TERM 1487 1159229 - 1159203 - g 80 -8.2 -4.18197 | overlap 1159221 AGCTTTTACCTAAAA CTTTAGAAGT TGAAGTT ACTTCTAAAG TAAAAGTAACAGGAA moaC 1158920 - 1159399 + | molybdenum cofactor biosynthesis protein C moaA 1159460 - 1160440 + | molybdenum cofactor biosynthesis protein A CLH_1102 1160443 - 1160892 + | mosc domain protein TERM 1488 1160913 - 1160957 + F 95 -5.4 -6.01725 | gap 1, opp_overlap 1160913 1160906 1160927 ATATTCAATAAAATG GCATTAAATAAAC-ATTTAAT TTAA ATTATTTTGTTTATTTAATGC TTTTTTATTTTTCTT CLH_1103 1161068 - 1161379 + | ATPase, AAA family TERM 1489 1162095 - 1162106 + G 86 -4.4 -5.79526 | opp_overlap 1162095 AAGAAGTGAATATTA TTGC ATTA GCAA TTTTTTTTCAAATGT CLH_1104 1161488 - 1162720 + | hypothetical protein TERM 1490 1162971 - 1162956 - g 79 -3.4 -5.58074 | opp_overlap 1162956 GAAGCAGTAAAAAAA TATAAT ATTA ATTATA ATTCTTTAAGGCATA TERM 1491 1163974 - 1163958 - g 74 -6.7 -4.39133 | opp_overlap 1163958, overlap 1163969 GAAGAATTATTAAAA TTAGTAT CAA ATACTAA TATAGTAAAGAGAGG TERM 1492 1164750 - 1164739 - g 77 -3 -5.56673 | ATTCAGAACAAAAAA TTAC AAAT GTAA CTGGTGATCATTATA CLH_1105 1162731 - 1165631 + | hypothetical protein TERM 1493 1165913 - 1165889 - g 86 -8.9 -4.42594 | opp_overlap 1165896, overlap 1165896 1165907 TAAATCAAATAGAAA TATAAAATTTA GTA TAAATTTTATA AATAAAAATAATATT TERM 1494 1166544 - 1166560 + G 72 -6.7 -4.0942 | overlap 1166540 TCACATGATTGTGAA TTTTTAC TTA GTAAAAA TTTATATAATAAATA CLH_1106 1165689 - 1167392 + | hypothetical protein CLH_1107 1167393 - 1168031 + | hypothetical protein CLH_1108 1168064 - 1169308 + | ATPase, AAA family TERM 1495 1169368 - 1169335 - T 86 -9.7 -4.15396 | opp_overlap 1169335 GGTTAAAGCAAATAA TGTGGAATGGATATC TTAG GATAATCATTCCACA TTTTAATTTTGTATA TERM 1496 1169335 - 1169368 + T 100 -11.9 -4.75518 | opp_overlap 1169335 GGTTAAAGCAAATAA TGTGGAATGGATATC TTAG GATAATCATTCCACA TTTTAATTTTGTATA CLH_1109 1169592 - 1169371 - | transcriptional regulator, XRE family TERM 1497 1170645 - 1170597 - R 95 -9.8 -4.21936 | opp_overlap 1170595 1170597 TCTACAATGCTAAAA GATTAAACGGCCTAAGTCCT TTGGAATTT ATGACTTTAGCCGTTTAATC TAATTTTTATTTTTC TERM 1498 1170597 - 1170645 + r 72 -7.6 -3.53667 | opp_overlap 1170597, overlap 1170595 TCTACAATGCTAAAA GATTAAACGGCCTAAGTCCT TTGGAATTT ATGACTTTAGCCGTTTAATC TAATTTTTATTTTTC boNT/E3 1174410 - 1170652 - | botulinum neurotoxin, type E3, BoNT/E3 ntnH 1177926 - 1174435 - | botulinum neurotoxin type E3, nontoxic-nonhemagglutinin component, NTNH TERM 1499 1174777 - 1174744 - G 73 -8.6 -3.10715 | opp_overlap 1174739 1174744, overlap 1174747 TGGATTAGTATTTAA TAATTTAAATTTTA GAGGTT TAAAATTTAAATTA TTTTCATTGTTAATT TERM 1500 1174744 - 1174777 + g 90 -9.3 -4.58644 | opp_overlap 1174744 1174747, overlap 1174739 TGGATTAGTATTTAA TAATTTAAATTTTAG AGGT TTAAAATTTAAATTA TTTTCATTGTTAATT TERM 1501 1176111 - 1176086 - G 78 -7.1 -4.55209 | overlap 1176106 TATATATTAAATAAA TTTTCACTTAA ATCT TTAAATGAAAA ATTCAACATACTACT p47 1179192 - 1177942 - | P-47 protein TERM 1502 1178849 - 1178870 + g 74 -8.9 -2.92938 | overlap 1178848 ACCTTAATATCATCA TTAGTTTTG TTTC CAAAACTAA ATTTAAGTTCTTTAA TERM 1503 1179014 - 1179000 - G 73 -4.4 -5.06414 | opp_overlap 1178994 CTTCCTTAATAAAAA TTTTAA TTC TTAAAA AATTTGATGTTCCGC CLH_1113 1179479 - 1179913 + | toxin complex component ORF-X1 TERM 1504 1180287 - 1180268 - g 79 -6.6 -4.68593 | opp_overlap 1180267 1180268 1180270 TTCATTATGTAAAAA TAGTTTTT ATAT AAAAACTA ATTCTTTAAAACTCT CLH_1114 1179927 - 1182173 + | toxin complex component ORF-X2 CLH_1115 1182205 - 1183668 + | toxin complex component ORF-X3 TERM 1505 1183798 - 1183842 + F 83 -11.1 -2.72851 | opp_overlap 1183803, overlap 1183803 AAAATGAAACCTATA AAAAAGAGCTAATAAAACT TAAAAAT AGTTTTGTTAGCTCTTTTA CTATTATATTTATTA TERM 1506 1183837 - 1183803 - f 100 -8.8 -5.33866 | opp_overlap 1183798 1183803 GAAACCTATAAAAAA GAGCTAATAAAACT TAAAAAT AGTTTTGTTAGCTC TTTTACTATTATATT TERM 1507 1183803 - 1183837 + F 100 -11 -4.49167 | opp_overlap 1183803, overlap 1183798 GAAACCTATAAAAAA GAGCTAATAAAACT TAAAAAT AGTTTTGTTAGCTC TTTTACTATTATATT CLH_1116 1184132 - 1184254 + | hypothetical protein TERM 1508 1184315 - 1184285 - g 79 -3.5 -5.66684 | overlap 1184308 GAATCTACAAAAAAA GTTAAAAATAATT CAAAT AATTATTCTAAAC AAGAAAAAAATATAT CLH_1117 1184255 - 1184380 + | hypothetical protein CLH_1118 1185603 - 1186367 + | ATPase, AAA family CLH_1119 1186404 - 1186847 + | Rrf2 family protein TERM 1509 1187579 - 1187567 - g 70 -4.9 -4.66938 | AGCTGGAACAGAAAA TATAG CTT CTATA GTAGGTCTTGGCAAA nifS 1186851 - 1188032 + | cysteine desulfurase NifS nifU 1188034 - 1188471 + | FeS cluster assembly scaffold protein NifU TERM 1510 1188513 - 1188529 + G 74 -8.7 -3.2404 | overlap 1188504 AGTAGGTATGAGTGG CGGAGTT GAT AGCTCCG TTGCTGCGTATTTAT TERM 1511 1188737 - 1188726 - g 86 -4.4 -5.75342 | opp_overlap 1188712 1188726 TTCTTTTAAAAAAAA GGTT ATTG AACC ATTTATTCAAGAGTA trmU 1188472 - 1189557 + | tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase TERM 1512 1189575 - 1189605 + F 100 -14.2 -5.20333 | opp_overlap 1189579 AAATGTGGTTTTTAA GCGATGATACTAGA ATT TTTGGTATCATCGC TTTTTATTGTACATA CLH_1123 1189982 - 1190482 + | PRC-barrel domain protein TERM 1513 1190489 - 1190509 + G 83 -9.9 -3.29544 | opp_overlap 1190485 1190480 1190489, overlap 1190487 1190486 AAAATATAAAAGTAA GTTAGTAAT TGT ATTACTAAC TCTATTATTAATAAT TERM 1514 1190509 - 1190489 - g 89 -9.9 -3.86208 | opp_overlap 1190489 1190487 1190486, overlap 1190485 1190480 AAAATATAAAAGTAA GTTAGTAAT TGT ATTACTAAC TCTATTATTAATAAT CLH_1124 1190460 - 1191491 + | permease TERM 1515 1191744 - 1191774 + F 93 -7 -5.76633 | gap 1, opp_overlap 1191742 1191744 ACCGCGGAAATAATA GCTTTCGTCCCTT TGTTAT AAGGGA-GAGAGC TTTTTTTGTATATGA alaS 1191866 - 1194505 + | alanyl-tRNA synthetase CLH_1126 1194692 - 1194949 + | hypothetical protein TERM 1516 1194948 - 1194977 + F 83 -7.1 -5.02074 | opp_overlap 1194951, overlap 1194951 ATTTAGAGATAAAGT AAAGAGTGCCCGT ATTA GCGGGTGCTCTTA TTTTTTAAGAGGTGC TERM 1517 1194951 - 1194974 + F 89 -8.8 -4.61482 | opp_overlap 1194951, overlap 1194948 TAGAGATAAAGTAAA GAGTGCCCGT ATTA GCGGGTGCTC TTATTTTTTAAGAGG TERM 1518 1195380 - 1195418 + G 72 -5.6 -4.48741 | opp_overlap 1195379, overlap 1195387 CATCAACATACATAC TTCAAGGTTATTTAGATA GAA TATCTAAATAATATTAAA TTTTATAATAGATTA CLH_1127 1194998 - 1195411 + | hypothetical protein TERM 1519 1195387 - 1195411 + F 87 -10.3 -3.273 | opp_overlap 1195379, overlap 1195380 ATACATACTTCAAGG TTATTTAGATA GAA TATCTAAATAA TATTAAATTTTATAA CLH_1128 1195624 - 1195890 + | hypothetical protein CLH_1129 1195934 - 1196398 + | transcriptional regulator, Fur family TERM 1520 1196420 - 1196404 - f 75 -6.7 -4.50353 | opp_overlap 1196404 1196402, overlap 1196401 AAATGAATAAAAGAA TTTCTTA AAT TAAGAAA TCTTTAATTATAAAA TERM 1521 1197352 - 1197338 - g 84 -5.8 -5.27477 | ATCCTAATGAAAAAA TTGTTA TAA TAACAA CAGGAAGCCAAGGAG CLH_1130 1196461 - 1198128 + | RNA-metabolising metallo-beta-lactamase family protein TERM 1522 1198208 - 1198238 + F 93 -9.9 -4.07568 | opp_overlap 1198213 1198234, overlap 1198213 1198220 AAAACAGTGGTTACA GGAGATTGGATAC TTTTT GTATCCAATTTTC TTTTGGAGAAAAAAA TERM 1523 1198213 - 1198233 + F 91 -8.4 -5.07652 | opp_overlap 1198213, overlap 1198208 1198220 AGTGGTTACAGGAGA TTGGATAC TTTTT GTATCCAA TTTTCTTTTGGAGAA typA 1198323 - 1200149 + | GTP-binding protein TypA/BipA TERM 1524 1200232 - 1200182 - f 95 -8.1 -5.25799 | gap 1, opp_overlap 1200187 1200189 1200192 1200196, overlap 1200184 1200186 1200187 1200189 AAAATAATATAAAAA GATATTATAATAAAGTAAATGGTC TTCT GACTATTTACTTTATTATA-TATT ACGGAGGAACTTTAT TERM 1525 1200230 - 1200184 - f 95 -10.7 -4.20977 | gap 1, opp_overlap 1200187 1200189 1200192 1200196, overlap 1200182 1200186 1200187 1200189 AATAATATAAAAAGA TATTATAATAAAGTAAATGGTC TTCT GACTATTTACTTTATTATA-TA TTACGGAGGAACTTT TERM 1526 1200229 - 1200186 - f 95 -11.4 -3.66691 | opp_overlap 1200187 1200189 1200192 1200196, overlap 1200184 1200182 1200187 1200189 TAATATAAAAAGATA TTATAATAAAGTAAATGGTC TTCT GACTATTTACTTTATTATAT ATTACGGAGGAACTT TERM 1527 1200187 - 1200228 + F 100 -17.1 -3.01791 | opp_overlap 1200187 1200186 1200184 1200182 1200189, overlap 1200189 1200192 1200196 AATATAAAAAGATAT TATAATAAAGTAAATGGTC TTCT GACTATTTACTTTATTATA TATTACGGAGGAACT TERM 1528 1200228 - 1200187 - f 100 -14.9 -2.78388 | opp_overlap 1200187 1200189 1200192 1200196, overlap 1200186 1200184 1200182 1200189 AATATAAAAAGATAT TATAATAAAGTAAATGGTC TTCT GACTATTTACTTTATTATA TATTACGGAGGAACT TERM 1529 1200226 - 1200189 - f 93 -13.1 -2.91239 | opp_overlap 1200189 1200187 1200192 1200196, overlap 1200187 1200186 1200184 1200182 TATAAAAAGATATTA TAATAAAGTAAATGGTC TTCT GACTATTTACTTTATTA TATATTACGGAGGAA TERM 1530 1200189 - 1200226 + F 100 -15.3 -3.06696 | opp_overlap 1200187 1200186 1200184 1200182 1200189, overlap 1200187 1200192 1200196 TATAAAAAGATATTA TAATAAAGTAAATGGTC TTCT GACTATTTACTTTATTA TATATTACGGAGGAA TERM 1531 1200192 - 1200223 + F 95 -12.6 -3.68024 | opp_overlap 1200189 1200187 1200186 1200184 1200182, overlap 1200189 1200187 1200196 AAAAAGATATTATAA TAAAGTAAATGGTC TTCT GACTATTTACTTTA TTATATATTACGGAG TERM 1532 1200196 - 1200219 + F 86 -9 -4.46254 | opp_overlap 1200189 1200187 1200186 1200184 1200182, overlap 1200192 1200189 1200187 AGATATTATAATAAA GTAAATGGTC TTCT GACTATTTAC TTTATTATATATTAC TERM 1533 1200912 - 1200901 - g 70 -3 -5.22943 | ATGAAATTGAAAAAA CAAT AACT ATTG CATCCATGATAGAAA CLH_1132 1200246 - 1201274 + | hypothetical protein CLH_1133 1201294 - 1201938 + | O-methyltransferase family protein CLH_1134 1201945 - 1203180 + | peptidase U32 CLH_1135 1203346 - 1204860 + | penicillin-binding protein 2 TERM 1534 1205474 - 1205460 - g 80 -5.8 -5.04597 | overlap 1205468 ATCTATATATAAAAA TTAAAG ATT CTTTAA CTAAAAGAGAAAGCA sigK 1204943 - 1205641 + | RNA polymerase sigma-K factor TERM 1535 1205689 - 1205637 - f 79 -8.3 -4.10429 | gap 2, opp_overlap 1205650, overlap 1205643 1205644 1205650 AATTATTTGGTAAAA TTTAAAGTTAAAATAAGGTGTGGCT AAAAA AG-CACACCTTATTTTAA-TATAAA AAACTATTAATTATA TERM 1536 1205684 - 1205643 - f 93 -9.8 -3.92659 | gap 1, opp_overlap 1205650, overlap 1205637 1205644 1205650 TTGGTAAAATTTAAA GTTAAAATAAGGTGTGGCT AAAAA AG-CACACCTTATTTTAAT ATAAAAAACTATTAA TERM 1537 1205683 - 1205644 - f 95 -13.3 -2.95113 | gap 1, opp_overlap 1205650, overlap 1205643 1205637 1205650 TGGTAAAATTTAAAG TTAAAATAAGGTGTGGCT AAAAA AG-CACACCTTATTTTAA TATAAAAAACTATTA TERM 1538 1205677 - 1205650 - f 78 -7.9 -4.37198 | gap 1, opp_overlap 1205650, overlap 1205644 1205643 1205637 AATTTAAAGTTAAAA TAAGGTGTGGCT AAAAA AG-CACACCTTA TTTTAATATAAAAAA TERM 1539 1205650 - 1205677 + F 78 -7.9 -4.34402 | gap 1, opp_overlap 1205650 1205644 1205643 1205637 AATTTAAAGTTAAAA TAAGGTGTGGCT AAAAA AG-CACACCTTA TTTTAATATAAAAAA CLH_1137 1205810 - 1206841 + | twitching mobility protein TERM 1540 1206989 - 1206975 - g 75 -8.6 -3.34344 | opp_overlap 1206975 TGACTTTGGAAGTAA GAAGCT ATC AGCTTC TCTTGCAGTAAAAAA TERM 1541 1206975 - 1206989 + G 73 -8.6 -3.05844 | opp_overlap 1206975 TGACTTTGGAAGTAA GAAGCT ATC AGCTTC TCTTGCAGTAAAAAA ftsA 1206934 - 1208187 + | cell division protein FtsA ftsZ 1208201 - 1209343 + | cell division protein FtsZ TERM 1542 1209380 - 1209407 + F 100 -7.1 -6.11644 | opp_overlap 1209366 1209380 ATATATAAGAAAAAA GCATGTAAGAT GAATTA GTCTTGCATGC TTTTTTTTTGCATAC TERM 1543 1209407 - 1209380 - f 78 -4.2 -5.62045 | opp_overlap 1209380, overlap 1209366 ATATATAAGAAAAAA GCATGTAAGA TGAATTAG TCTTGCATGC TTTTTTTTTGCATAC spoIIGA 1209603 - 1210403 + | sigma-E processing peptidase spoiiga TERM 1544 1210486 - 1210516 + G 71 -8.2 -3.29511 | opp_overlap 1210486 1210481 1210478 AAGAAAGTTATATTA TGTAGGTGGTAGTG ATG CACTTCCACCACCA TTATCAAAAGATGAA sigE 1210415 - 1211122 + | RNA polymerase sigma-E factor TERM 1545 1211303 - 1211282 - g 77 -5.3 -5.11881 | AAAGAAAAAAAACAA CTTCTTTTA GCAT TAAAAAAAG GAGATTTAAGTGCTA sigG 1211204 - 1211977 + | RNA polymerase sigma-G factor TERM 1546 1212035 - 1211993 - f 100 -15.4 -2.66912 | opp_overlap 1212004, overlap 1211995 1212004 ATTTAATCCATATGA TATAATAAAAACTGATATTT AAT AAATATCAGTTTTTGTTATA TAAGGAATTAAGTAA TERM 1547 1212033 - 1211995 - f 93 -13.6 -2.87522 | opp_overlap 1212004, overlap 1211993 1212004 TTAATCCATATGATA TAATAAAAACTGATATTT AAT AAATATCAGTTTTTGTTA TATAAGGAATTAAGT TERM 1548 1212024 - 1212004 - f 100 -9.9 -5.25699 | opp_overlap 1212004, overlap 1211995 1211993 ATGATATAATAAAAA CTGATATTT AAT AAATATCAG TTTTTGTTATATAAG TERM 1549 1212004 - 1212024 + F 100 -9.9 -5.24796 | opp_overlap 1212004 1211995 1211993 ATGATATAATAAAAA CTGATATTT AAT AAATATCAG TTTTTGTTATATAAG CLH_1143 1212256 - 1212528 + | PRC-barrel domain protein nrdR 1212598 - 1213050 + | transcriptional regulator NrdR CLH_1145 1213283 - 1213975 + | hypothetical protein CLH_1146 1213987 - 1214691 + | alkaline phosphatase synthesis transcriptional regulatory proteinphoP CLH_1147 1214718 - 1216385 + | sensory histidine kinase TERM 1550 1216461 - 1216498 + F 100 -13.1 -4.22346 | opp_overlap 1216466 1216469, overlap 1216466 1216495 AATATAGTTAACTAT TCAAATAAGCTGAAAAT AAAA ATTTTCAGCTTATTTTA TTTTGAATAAATTTA TERM 1551 1216493 - 1216466 - f 95 -13 -3.71794 | opp_overlap 1216466 1216461, overlap 1216469 AGTTAACTATTCAAA TAAGCTGAAAAT AAAA ATTTTCAGCTTA TTTTATTTTGAATAA TERM 1552 1216466 - 1216493 + F 100 -13 -5.10933 | opp_overlap 1216466 1216469, overlap 1216461 AGTTAACTATTCAAA TAAGCTGAAAAT AAAA ATTTTCAGCTTA TTTTATTTTGAATAA TERM 1553 1216490 - 1216469 - f 95 -10.3 -3.98745 | opp_overlap 1216466 1216461, overlap 1216466 TAACTATTCAAATAA GCTGAAAAT AAAA ATTTTCAGC TTATTTTATTTTGAA TERM 1554 1216875 - 1216863 - g 74 -6.3 -4.57304 | ATTTAATGAAATAAA TTCTG AGG CAGAA ATAAGTGCGCAAGCA CLH_1148 1216669 - 1217559 + | periplasmic phosphate-binding protein TERM 1555 1217774 - 1217764 - g 70 -5.4 -4.44608 | TTTATTTAAAAATAA TTGG AAA CCAA ATCAAGAACAGCCTT pstC 1217582 - 1218472 + | phosphate ABC transporter, permease protein PstC pstA 1218472 - 1219356 + | phosphate ABC transporter, permease protein PstA pstB 1219370 - 1220119 + | phosphate ABC transporter, ATP-binding protein phoU 1220138 - 1220794 + | phosphate transport system regulatory protein PhoU TERM 1556 1220803 - 1220828 + F 100 -12 -4.49556 | opp_overlap 1220799 1220798 TGAATAAAAAGTTTA GGCTAGGAAA TAAGAT TTTCCTAGCC TTTATTTAATAAAAA TERM 1557 1222170 - 1222154 - g 84 -6.7 -5.13016 | opp_overlap 1222154 AACTAAAAGGAAAAA TAAATAC TAA GTATTTA TTAATGGCTGATTGT CLH_1153 1221016 - 1222350 + | Fe-S oxidoreductase engA 1222350 - 1223666 + | ribosome-associated GTPase EngA TERM 1558 1224626 - 1224602 - g 77 -2.1 -5.78622 | overlap 1224604 TTATTTGAAAAAAAA GATCCTAAATC AGG GATTGAAGAAC TTATGCTTCGTGAAA CLH_1155 1223669 - 1224661 + | NAD-dependent glycerol-3-phosphate dehydrogenase family protein spoIVA 1224810 - 1226288 + | stage IV sporulation protein A TERM 1559 1226348 - 1226307 - f 73 -9 -2.84581 | opp_overlap 1226313, overlap 1226313 TAAGGGATTAATAAC TTAAAAGGAGTTTAAAGA ACATTG TCTTTGAACTCCTTTTTA ATACATATTAATAAA TERM 1560 1226313 - 1226342 + F 100 -10.2 -4.76644 | opp_overlap 1226307 1226313 ATTAATAACTTAAAA GGAGTTTAAAGA ACATTG TCTTTGAACTCC TTTTTAATACATATT TERM 1561 1226342 - 1226313 - f 78 -8 -4.36729 | opp_overlap 1226313, overlap 1226307 ATTAATAACTTAAAA GGAGTTTAAAGA ACATTG TCTTTGAACTCC TTTTTAATACATATT CLH_1157 1226448 - 1226870 + | putative plasmid-related protein TERM 1562 1226961 - 1226922 - f 78 -6.6 -4.81163 | opp_overlap 1226931, overlap 1226925 1226931 1226950 1226953 TAAACATTAACAAAA TAATTTAAATACTCTTGG AATT CCAAGAGTATTTTTATGA TAAAAATAAAAAATA TERM 1563 1226958 - 1226925 - f 82 -8.3 -4.47491 | opp_overlap 1226931, overlap 1226922 1226931 1226950 1226953 ACATTAACAAAATAA TTTAAATACTCTTGG AATT CCAAGAGTATTTTTA TGATAAAAATAAAAA TERM 1564 1226931 - 1226952 + F 100 -11.7 -4.91109 | opp_overlap 1226925 1226922 1226931 1226950 ACAAAATAATTTAAA TACTCTTGG AATT CCAAGAGTA TTTTTATGATAAAAA TERM 1565 1226952 - 1226931 - f 100 -11.7 -3.93619 | opp_overlap 1226931, overlap 1226925 1226922 1226950 ACAAAATAATTTAAA TACTCTTGG AATT CCAAGAGTA TTTTTATGATAAAAA ansA 1227021 - 1228010 + | L-asparaginase, type II TERM 1566 1228238 - 1228271 + F 76 -2.6 -5.96894 | gap 1 CTTATTAATAATTAA GTCGCTATGAGTTAT CAAAT AAAACT-ATAGTGAC TTTTTTTATTTGAAT CLH_1159 1228305 - 1229672 + | inner membrane protein YicO TERM 1567 1229781 - 1229742 - f 100 -12.4 -4.91084 | opp_overlap 1229742 TAGGGAATAATAAAA GTATGCCTCTAATATTTG GTGT CAAATGTTAGAGGTATAC TTTATTTATAATTGA TERM 1568 1229742 - 1229781 + F 100 -16.8 -4.62622 | opp_overlap 1229742 TAGGGAATAATAAAA GTATGCCTCTAATATTTG GTGT CAAATGTTAGAGGTATAC TTTATTTATAATTGA TERM 1569 1230233 - 1230222 - g 73 -3 -5.55769 | opp_overlap 1230222 CTCTAGAAGAAAAAA TTAG AGGA CTAA TTAATAGTAAACTAA CLH_1160 1230074 - 1230955 + | hypothetical protein CLH_1161 1230969 - 1231238 + | protein YlzA gmk 1231238 - 1231876 + | guanylate kinase rpoZ 1231857 - 1232057 + | DNA-directed RNA polymerase, omega subunit TERM 1570 1232202 - 1232192 - g 70 -5.4 -4.58466 | opp_overlap 1232192, overlap 1232187 GTTATAATGACAAAA TCAG CAA CTGA ATTTGTTACACCACT TERM 1571 1232901 - 1232885 - g 74 -6.6 -4.431 | opp_overlap 1232885 GATGTAGTTATAAAA TCAGCT GCTGT AGCTGA TTATAAAGCAAAAGA coaBC 1232078 - 1233256 + | phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase TERM 1572 1233246 - 1233266 + F 100 -11.2 -4.02817 | opp_overlap 1233250, overlap 1233250 TATTTGATATTATTG GAAAGCGC TAAAT GCGCTTTC TTCTTATTATACAAG TERM 1573 1233250 - 1233262 + F 74 -6.2 -4.60292 | opp_overlap 1233250, overlap 1233246 TGATATTATTGGAAA GCGC TAAAT GCGC TTTCTTCTTATTATA TERM 1574 1233813 - 1233800 - g 71 -3.9 -5.011 | AGTGAAATAACAAAA GAAAA TGGA TTTTC AAGTTATTCTTTAAA priA 1233320 - 1235521 + | primosomal protein N' def 1235534 - 1235977 + | peptide deformylase TERM 1575 1236742 - 1236717 - g 88 -9.3 -4.14764 | GGTGAAAGAATGAAA TTATATAAAAC AAAA GTTTTATATAA GGAAGTTTCTAATAA fmt 1235991 - 1236920 + | methionyl-tRNA formyltransferase CLH_1168 1236961 - 1237638 + | conserved protein YugP sun 1237656 - 1238972 + | ribosomal RNA small subunit methyltransferase B CLH_1170 1238987 - 1240030 + | radical SAM enzyme, Cfr family CLH_1171 1240032 - 1240751 + | protein phosphatase PrpC CLH_1172 1240753 - 1242696 + | serine/threonine-protein kinase PrkC TERM 1576 1242698 - 1242749 + F 100 -15 -3.28189 | opp_overlap 1242697 1242703 1242705 1242717, overlap 1242705 1242708 CAAAGGTAGAATAAT TAAGAGACTGTCTTAAAAAGTAAT TTAA ATTACTTTTTAAGATGGTTTTTTA TAGTTTCTTTATTTA TERM 1577 1242742 - 1242705 - f 75 -8.7 -3.23854 | opp_overlap 1242698 1242705 1242708, overlap 1242697 1242703 1242717 AGAATAATTAAGAGA CTGTCTTAAAAAGTAAT TTAA ATTACTTTTTAAGATGG TTTTTTATAGTTTCT TERM 1578 1242705 - 1242742 + F 100 -13.1 -5.43621 | opp_overlap 1242697 1242705 1242703 1242717, overlap 1242698 1242708 AGAATAATTAAGAGA CTGTCTTAAAAAGTAAT TTAA ATTACTTTTTAAGATGG TTTTTTATAGTTTCT TERM 1579 1242708 - 1242739 + F 100 -13.4 -3.47311 | opp_overlap 1242697 1242705 1242703 1242717, overlap 1242705 1242698 ATAATTAAGAGACTG TCTTAAAAAGTAAT TTAA ATTACTTTTTAAGA TGGTTTTTTATAGTT TERM 1580 1243044 - 1243060 + G 70 -5.2 -4.58303 | CTTAGACCGGCTGTA GCTAAT ATTTC ATTAGC TTTTGTGGTATTTGC rsgA 1242837 - 1243709 + | ribosome small subunit-dependent GTPase A rpe 1243703 - 1244347 + | ribulose-phosphate 3-epimerase CLH_1175 1244356 - 1244994 + | thiamine pyrophosphokinase TERM 1581 1245221 - 1245242 + T 79 -3.9 -5.64421 | gap 1, opp_overlap 1245221 TAAAAAAATAAAAAA TGCAATTCAT ATC AT-AATTGCA TTTTTTATTTGAACT TERM 1582 1245242 - 1245221 - T 86 -3.9 -6.12458 | gap 1, opp_overlap 1245221 TAAAAAAATAAAAAA TGCAATTCAT ATC AT-AATTGCA TTTTTTATTTGAACT rpmB 1245447 - 1245256 - | ribosomal protein L28 CLH_1177 1245645 - 1245995 + | hypothetical protein TERM 1583 1247246 - 1247263 + G 70 -8.5 -2.7218 | opp_overlap 1247246, overlap 1247245 TAATTCCTACAACAA CTATTCC ACAA GGAATAG CTTGTATAACTATGT TERM 1584 1247263 - 1247246 - g 78 -8.5 -3.8062 | opp_overlap 1247245 1247246 TAATTCCTACAACAA CTATTCC ACAA GGAATAG CTTGTATAACTATGT CLH_1178 1246009 - 1247655 + | DAK2 domain protein TERM 1585 1247685 - 1247700 + F 83 -6.1 -5.40072 | opp_overlap 1247679 1247685 TTATATAATTAAAAA GCACC TTAATT GGTGC TTTTTTTGGAGGAAA TERM 1586 1247700 - 1247685 - f 78 -6.1 -4.96646 | opp_overlap 1247685, overlap 1247679 TTATATAATTAAAAA GCACC TTAATT GGTGC TTTTTTTGGAGGAAA recG 1247721 - 1249754 + | ATP-dependent DNA helicase RecG TERM 1587 1250338 - 1250349 + G 71 -4.4 -4.89852 | TAGAAAATATGGTAA CACA ACAG TGTG TTTTTATGGGTATAA rsmD 1249817 - 1250374 + | RNA methyltransferase, RsmD family coaD 1250377 - 1250856 + | pantetheine-phosphate adenylyltransferase TERM 1588 1251216 - 1251181 - g 95 -10.7 -4.39277 | TAAGAGCACAAGAAA TTATAGCTTCAGCAC AAAGAG ATGCTAAAGCTATAA GATTAGGTTCAAGAG CLH_1183 1250868 - 1251410 + | archaeal/vacuolar-type H+-ATPase subunit H ylbJ 1252565 - 1251390 - | sporulation integral membrane protein YlbJ TERM 1589 1251908 - 1251924 + g 79 -5.1 -5.5604 | ATAATATTGTGTTTA CTCCATT TCC AACGGAG TTTTTTATTGCTTGA TERM 1590 1251965 - 1251999 + g 91 -8.1 -5.16071 | opp_overlap 1251970 ATTTTTTTTCATTTA TAGAACTTTTAGAAA GCGAA TTTCTTAAGGTTCTA TTTTTATTGGTAATT TERM 1591 1252002 - 1252025 + g 81 -9.8 -3.01924 | TCTTAAGGTTCTATT TTTATTGGTA ATTA TACCAATAAA TATTACGGAAAGATA TERM 1592 1252613 - 1252597 - R 77 -7.3 -4.44915 | CAAGGATTTATAAAA GAGAGTA ATA TACCCTC ATAAATTTTATAGTA CLH_1184 1253884 - 1252688 - | protein YlbM TERM 1593 1253962 - 1253950 - H 70 -4.9 -4.76274 | opp_overlap 1253950 1253953 TAAATCAAGAGAAAA TGTTT GTT AAACA ATTATCAATATTGCA TERM 1594 1254208 - 1254192 - g 74 -5.1 -5.09895 | overlap 1254194 CACTTATGGAAAAAA TATGGCT TAG AGCCAAA TCAGATAAGAAGAAT TERM 1595 1254206 - 1254194 - g 77 -7.7 -4.17608 | overlap 1254192 CTTATGGAAAAAATA TGGCT TAG AGCCA AATCAGATAAGAAGA pta 1254173 - 1255171 + | phosphate acetyltransferase ackA 1255197 - 1256393 + | acetate kinase TERM 1596 1256714 - 1256692 - g 70 -6.4 -4.0802 | opp_overlap 1256698, overlap 1256693 ATTGTAATAATGAAA GCTAAAGTAA AGG TTACTTTAGA AATGAATTGTGCAAG TERM 1597 1256713 - 1256693 - g 81 -9.9 -3.04089 | opp_overlap 1256698, overlap 1256692 TTGTAATAATGAAAG CTAAAGTAA AGG TTACTTTAG AAATGAATTGTGCAA CLH_1187 1256524 - 1257030 + | hypothetical protein rpmF 1257033 - 1257215 + | ribosomal protein L32 TERM 1598 1257240 - 1257213 - f 100 -13 -4.84359 | opp_overlap 1257213 1257218, overlap 1257218 GTATCTTCAGAAAAA TAAAAGAAAGTC TTTA GACTTTCTTTTA TTTTTATATTAGAAT TERM 1599 1257213 - 1257240 + F 100 -13 -5.09762 | opp_overlap 1257213 1257218, overlap 1257218 GTATCTTCAGAAAAA TAAAAGAAAGTC TTTA GACTTTCTTTTA TTTTTATATTAGAAT TERM 1600 1257218 - 1257235 + F 100 -8.5 -5.40873 | opp_overlap 1257218 1257213, overlap 1257213 TTCAGAAAAATAAAA GAAAGTC TTTA GACTTTC TTTTATTTTTATATT TERM 1601 1257235 - 1257218 - f 100 -8.5 -5.35224 | opp_overlap 1257213 1257218, overlap 1257213 TTCAGAAAAATAAAA GAAAGTC TTTA GACTTTC TTTTATTTTTATATT TERM 1602 1257308 - 1257351 + F 100 -8.6 -5.75599 | TAATTAAAAATGCTT TAGATTAATTAAATTTATTA TGAT TAATATTTTTAATTAATCTA TTTTTTTATAATTTA TERM 1603 1258236 - 1258246 + G 84 -6.8 -5.03314 | opp_overlap 1258235 1258236 GATTATAAAGAATAT GGTG GAG CACC TTTTTTGGGAGTGAA plsX 1257390 - 1258391 + | fatty acid/phospholipid synthesis protein PlsX acpP 1258480 - 1258710 + | acyl carrier protein TERM 1604 1258716 - 1258733 + F 91 -8.4 -5.0065 | opp_overlap 1258716 CGATGAATAATATAA TCCCGC GAGTGA GCGGGA TTTTCTTTATAACTA TERM 1605 1258733 - 1258716 - f 78 -8.4 -3.85505 | opp_overlap 1258716 CGATGAATAATATAA TCCCGC GAGTGA GCGGGA TTTTCTTTATAACTA TERM 1606 1258974 - 1259009 + G 70 -4.8 -4.78764 | overlap 1258964 1258979 GATTAGAATTTTTAG GAGATTCTGTATTACA ACTT TGTATTACGGAGTATC TTTTTAATAAGTTTA rnc 1258829 - 1259527 + | ribonuclease III CLH_1192 1259520 - 1260542 + | radical SAM superfamily protein TERM 1607 1260559 - 1260542 - f 83 -11.3 -2.72954 | opp_overlap 1260542, overlap 1260539 1260537 TAACATTACATATTA GCGAGAG GAAA CTCTCGC TTTTATTCTGTAAGT TERM 1608 1260542 - 1260559 + F 100 -11.3 -4.84914 | opp_overlap 1260539 1260537 1260542 TAACATTACATATTA GCGAGAG GAAA CTCTCGC TTTTATTCTGTAAGT TERM 1609 1262602 - 1262569 - g 70 -8.4 -2.5655 | opp_overlap 1262569 1262568, overlap 1262568 TTTAGGGAGAGCAAC CTTTTTACCTTTAA ATATAA TAAAAGGTAAAAAG CTTATTTTAGATAAT TERM 1610 1262569 - 1262602 + G 73 -8.4 -3.13007 | opp_overlap 1262568 1262569, overlap 1262568 TTTAGGGAGAGCAAC CTTTTTACCTTTAA ATATAA TAAAAGGTAAAAAG CTTATTTTAGATAAT smc 1260830 - 1264387 + | chromosome segregation protein SMC TERM 1611 1264414 - 1264424 + F 80 -2.6 -6.15828 | opp_overlap 1264414 GAATATAGTATATTA TATT TGC AATA TTTTTTTTTGATAAA ftsY 1264583 - 1265491 + | signal recognition particle-docking protein FtsY TERM 1612 1265650 - 1265617 - f 93 -4.7 -6.23317 | opp_overlap 1265621, overlap 1265622 AGAAAAATAAAAAAA TATGACTGTTAAGTA AAAA TACTTGACAGCTATA TAAAATCCTGTTAAA CLH_1195 1265692 - 1266021 + | DNA-binding protein TERM 1613 1267353 - 1267328 - g 78 -2.6 -5.88471 | overlap 1267330 1267339 GATGATGAAAAAAAA TATGAAGCAA ATGAAG TCGCTTCAAA AACAGTCTAAAAAAG TERM 1614 1267351 - 1267330 - g 70 -5.2 -4.5787 | overlap 1267328 1267339 TGATGAAAAAAAATA TGAAGCAA ATGAAG TCGCTTCA AAAACAGTCTAAAAA ffh 1266036 - 1267394 + | signal recognition particle protein rpsP 1267429 - 1267674 + | ribosomal protein S16 CLH_1198 1267724 - 1267951 + | hypothetical protein TERM 1615 1267959 - 1267980 + F 93 -8.8 -4.77986 | opp_overlap 1267959 TCATTTAAAAATAAA GAGTTAGG GTTAAA CCTAACTC TTTTTAAGTATTTAA TERM 1616 1267980 - 1267959 - f 93 -8.8 -4.89063 | opp_overlap 1267959 TCATTTAAAAATAAA GAGTTAGG GTTAAA CCTAACTC TTTTTAAGTATTTAA TERM 1617 1268144 - 1268129 - g 72 -3.4 -5.25805 | overlap 1268120 AATAAATTTAAAAAA TTAAAA ACTG TTTTAA TTGACGGAGAACATA rimM 1268027 - 1268524 + | 16S rRNA processing protein RimM TERM 1618 1269191 - 1269179 - g 72 -4.9 -4.99638 | AGATTTATATAAAAA TGTTA TTT TAACA AAAGAAGATAAAAAG trmD 1268514 - 1269230 + | tRNA (guanine-N1)-methyltransferase rplS 1269353 - 1269703 + | ribosomal protein L19 TERM 1619 1269716 - 1269734 + F 100 -8.8 -5.74122 | opp_overlap 1269716 1269715, overlap 1269718 TAATTAGATTAAAAG GTGGACTG ATT CAGTCCTC TTTTTTTCTATAATA TERM 1620 1269734 - 1269716 - f 75 -8.8 -3.22849 | opp_overlap 1269716 1269718, overlap 1269715 TAATTAGATTAAAAG GTGGACTG ATT CAGTCCTC TTTTTTTCTATAATA TERM 1621 1269718 - 1269732 + F 100 -10 -4.50122 | opp_overlap 1269716 1269715, overlap 1269716 ATTAGATTAAAAGGT GGACTG ATT CAGTCC TCTTTTTTTCTATAA TERM 1622 1269759 - 1269772 + F 83 -6.7 -5.16132 | opp_overlap 1269759 1269762 1269763 ATAATAAATTAATTA GAAGC TTAA GCTTC TTTTCTTTTAATATA TERM 1623 1269806 - 1269762 - f 75 -8.1 -3.59516 | opp_overlap 1269759, overlap 1269759 1269763 ATAAATTAATTAGAA GCTTAAGCTTCTTTTCTTTTA ATA TAGAAAAAAAGAAGCGTAAGG AGGAAATAAAATGGC TERM 1624 1269805 - 1269763 - f 86 -11.6 -2.74625 | opp_overlap 1269759, overlap 1269759 1269762 TAAATTAATTAGAAG CTTAAGCTTCTTTTCTTTTA ATA TAGAAAAAAAGAAGCGTAAG GAGGAAATAAAATGG CLH_1202 1269817 - 1270674 + | GTP-binding protein CLH_1203 1270667 - 1271482 + | ribonuclease HII TERM 1625 1271524 - 1271487 - T 100 -14.6 -5.35459 | opp_overlap 1271487 ACATATTATAAAAAA TACCTTGTAAAATAAT AATAAA ATTATTTTACAAGGTA TTTTTACGTTCTAAA TERM 1626 1271487 - 1271524 + T 100 -14.6 -4.78149 | opp_overlap 1271487 ACATATTATAAAAAA TACCTTGTAAAATAAT AATAAA ATTATTTTACAAGGTA TTTTTACGTTCTAAA CLH_1204 1271896 - 1271528 - | hypothetical protein TERM 1627 1272491 - 1272468 - g 93 -5.4 -5.87996 | opp_overlap 1272469 1272485, overlap 1272469 GAAGGAATAAAAAAA GGGAAAAATA AATT TATTTTTCCT TATGAAAATTTAGAG TERM 1628 1272469 - 1272490 + G 79 -8.9 -3.3506 | opp_overlap 1272469 1272468, overlap 1272485 AAGGAATAAAAAAAG GGAAAAATA AATT TATTTTTCC TTATGAAAATTTAGA TERM 1629 1272490 - 1272469 - g 86 -8.9 -4.10357 | opp_overlap 1272469 1272485, overlap 1272468 AAGGAATAAAAAAAG GGAAAAATA AATT TATTTTTCC TTATGAAAATTTAGA CLH_1205 1272075 - 1273595 + | putative Mg chelatase homolog dprA 1273616 - 1274674 + | DNA protecting protein DprA TERM 1630 1274696 - 1274716 + F 70 -7.7 -3.39803 | TTTAGGGGGTGAGTA CTTCATAAA ATT TTTATGGAG TTATAAATATGGGTC topA 1274725 - 1276812 + | DNA topoisomerase I codY 1277003 - 1277779 + | GTP-sensing transcriptional pleiotropic repressor CodY TERM 1631 1277792 - 1277772 - f 86 -4.2 -5.96521 | opp_overlap 1277772 ATGAATTAAAAAAAA TAAAATAA TAATT TTATTTTA AGACTAGACGAGCTA TERM 1632 1277808 - 1277846 + F 100 -17.2 -4.56597 | opp_overlap 1277812, overlap 1277812 AGACTAGACGAGCTA TAAATAGAAGAAATCAAG AAA TTTGATTTCTTCTATTTA TTTTTAGAGAAAAAG TERM 1633 1277842 - 1277812 - f 100 -12.9 -3.94409 | opp_overlap 1277812 1277808 TAGACGAGCTATAAA TAGAAGAAATCAA GAAAT TTGATTTCTTCTA TTTATTTTTAGAGAA TERM 1634 1277812 - 1277842 + F 100 -13.6 -4.85782 | opp_overlap 1277812, overlap 1277808 TAGACGAGCTATAAA TAGAAGAAATCAAG AAA TTTGATTTCTTCTA TTTATTTTTAGAGAA rpsB 1278011 - 1278712 + | ribosomal protein S2 TERM 1635 1278761 - 1278734 - f 100 -14.4 -3.0752 | opp_overlap 1278734 1278737 1278739 1278752, overlap 1278737 TATACTATTTTAATA GAAGACAAAACA ATTT TGTTTTGTCTTC TAGCTTAGAAGCCAC TERM 1636 1278734 - 1278761 + F 100 -14.4 -2.52464 | opp_overlap 1278734 1278737, overlap 1278737 1278739 1278752 TATACTATTTTAATA GAAGACAAAACA ATTT TGTTTTGTCTTC TAGCTTAGAAGCCAC TERM 1637 1278758 - 1278737 - f 91 -10.3 -3.67878 | opp_overlap 1278734 1278737 1278739 1278752, overlap 1278734 ACTATTTTAATAGAA GACAAAACA ATTT TGTTTTGTC TTCTAGCTTAGAAGC TERM 1638 1278737 - 1278758 + F 90 -10.3 -3.41878 | opp_overlap 1278737 1278734, overlap 1278734 1278739 1278752 ACTATTTTAATAGAA GACAAAACA ATTT TGTTTTGTC TTCTAGCTTAGAAGC TERM 1639 1278739 - 1278751 + F 70 -4.9 -4.74285 | opp_overlap 1278737 1278734, overlap 1278737 1278734 TATTTTAATAGAAGA CAAAA CAA TTTTG TTTTGTCTTCTAGCT TERM 1640 1278779 - 1278817 + F 100 -13 -4.35091 | opp_overlap 1278779 GCTTAGAAGCCACAA TTATTTAAGATTTAATAT TTT ATATTAAATTTTAAATAA TTTCTTCTAAATATT TERM 1641 1278817 - 1278779 - f 90 -10.8 -3.45054 | opp_overlap 1278779 GCTTAGAAGCCACAA TTATTTAAGATTTAATAT TTT ATATTAAATTTTAAATAA TTTCTTCTAAATATT TERM 1642 1279706 - 1279696 - g 72 -6.8 -4.10717 | GAAAAAGCTAAAGAA GCAG GTT CTGC AATCAAAGTAAATAG tsf 1278895 - 1279806 + | translation elongation factor Ts TERM 1643 1279848 - 1279820 - f 70 -3.1 -5.30339 | opp_overlap 1279825, overlap 1279825 AGTAAAATATAAAAA CTAAAGAGGACAC TCT GTGTTCTCTTTTT TTAAAGAAAATAATA TERM 1644 1279825 - 1279843 + F 100 -9.6 -5.40072 | opp_overlap 1279820 1279825 AATATAAAAACTAAA GAGGACAC TCT GTGTTCTC TTTTTTTAAAGAAAA TERM 1645 1279843 - 1279825 - f 77 -7.4 -4.41882 | opp_overlap 1279825, overlap 1279820 AATATAAAAACTAAA GAGGACAC TCT GTGTTCTC TTTTTTTAAAGAAAA TERM 1646 1280465 - 1280449 - g 100 -6.7 -5.68023 | opp_overlap 1280451 CCAGAAGCAAAAAAA TATGATA CAC TATCATA TATAGATGTTTTAGA pyrH 1279915 - 1280628 + | UMP kinase frr 1280639 - 1281196 + | ribosome recycling factor TERM 1647 1281220 - 1281205 - f 84 -9 -4.19953 | opp_overlap 1281205 TATTTAATCTCAAAA CCTGCT ATTT AGCAGG TTTTTTTCCTTAATC TERM 1648 1281205 - 1281220 + F 100 -9 -5.65513 | opp_overlap 1281205 TATTTAATCTCAAAA CCTGCT ATTT AGCAGG TTTTTTTCCTTAATC uppS 1281295 - 1282053 + | di-trans,poly-cis-decaprenylcistransferase cdsA 1282068 - 1282862 + | phosphatidate cytidylyltransferase TERM 1649 1282877 - 1282904 + F 84 -5 -5.68023 | ATATTTATTAAAAAA TCTGTGGATTTA AATT TAAATCTATGGA TTTTTTTGGTTATAA CLH_1215 1283017 - 1283988 + | hypothetical protein dxr 1284039 - 1285196 + | 1-deoxy-D-xylulose 5-phosphate reductoisomerase TERM 1650 1285236 - 1285246 + G 70 -5.4 -4.56729 | overlap 1285219 GTAGCTATACTAGGT GCTA TTT TAGC TTTTAGTGTTTTAAT rseP 1285203 - 1286231 + | RIP metalloprotease RseP ispG 1286243 - 1287292 + | 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase TERM 1651 1287357 - 1287378 + F 93 -9.5 -4.56978 | opp_overlap 1287357 1287356 1287359 ATATAAAAAGAAATG TAGGGGGAT GAAA ATCCCTCTA TTTATTCTTTAGAGA TERM 1652 1287956 - 1287944 - g 72 -3.5 -5.22104 | CAAAAAAGAAGAAAA TATTA AAA TAATA AAAGAAGTAATGAAT polC 1287399 - 1291757 + | DNA polymerase III, alpha subunit, Gram-positive type TERM 1653 1291792 - 1291778 - f 70 -3.6 -5.09426 | overlap 1291782 TTTAAGTTGAAAAAA TAAACC TTT AGTTTA AAATAAAGGAATGGA TERM 1654 1291909 - 1291928 + F 77 -7.1 -4.40003 | opp_overlap 1291909 1291907 TAGGCTATAAAAGTA GAGTGGG AAATTA CCCGCTC TTTCTATTTGTAACG TERM 1655 1291942 - 1291965 + F 80 -6.8 -4.95876 | overlap 1291962 TCTTTCTATTTGTAA CGCAACTA CTTTAATA TAGTTGCG TTTTTGATTATGATT TERM 1656 1292460 - 1292448 - g 72 -4.9 -4.87665 | GTTGAGGGAGAAAAA GAATT AAA AATTC CAACTGAAAAAATAA CLH_1220 1292043 - 1292504 + | hypothetical protein nusA 1292522 - 1293676 + | transcription termination factor NusA CLH_1222 1293691 - 1293957 + | hypothetical protein CLH_1223 1293950 - 1294270 + | ribosomal protein, L7Ae family infB 1294290 - 1296353 + | translation initiation factor IF-2 rbfA 1296367 - 1296717 + | ribosome-binding factor A TERM 1657 1296868 - 1296892 + G 91 -10.1 -4.29621 | opp_overlap 1296870 1296872 CTTATATTATTTCAA GAGATGTTATC CAA GATAACCTCTC TTTCCTTTCTTTATC CLH_1226 1296717 - 1297694 + | DHH subfamily 1 protein truB 1297691 - 1298566 + | tRNA pseudouridine synthase B ribF 1298583 - 1299509 + | riboflavin biosynthesis protein RibF rpsO 1299626 - 1299889 + | ribosomal protein S15 TERM 1658 1299894 - 1299914 + F 100 -14.1 -4.17316 | opp_overlap 1299891 1299890 TAAGAAGATAATTTT TAGAGCGGA TCT TCCGCTCTA TTATTTTAAAAAAAT CLH_1230 1299970 - 1302084 + | polyribonucleotide nucleotidyltransferase TERM 1659 1302106 - 1302082 - f 76 -4.3 -5.44198 | opp_overlap 1302087, overlap 1302086 1302087 AACAAAGAAGAAAAA TAAAGGGCAAT TAA ATTGCCTTTTT GTTCTTTTATTAAAT TERM 1660 1302102 - 1302086 - f 74 -5.1 -5.11254 | opp_overlap 1302087, overlap 1302082 1302087 AAGAAGAAAAATAAA GGGCAAT TAA ATTGCCT TTTTGTTCTTTTATT TERM 1661 1302087 - 1302101 + F 100 -8.6 -5.47964 | opp_overlap 1302086 1302082 1302087 AGAAGAAAAATAAAG GGCAAT TAA ATTGCC TTTTTGTTCTTTTAT TERM 1662 1302101 - 1302087 - f 75 -8.6 -3.63092 | opp_overlap 1302087, overlap 1302086 1302082 AGAAGAAAAATAAAG GGCAAT TAA ATTGCC TTTTTGTTCTTTTAT TERM 1663 1302114 - 1302130 + F 86 -5.3 -5.72616 | GCCTTTTTGTTCTTT TATTAAA TTT TTTAATA TTTTTTTATATAAAT TERM 1664 1302179 - 1302168 - f 73 -5.8 -4.73864 | opp_overlap 1302168, overlap 1302163 GTAATGAATATAAAA TCGC TTTG GCGA TTTTTTTATTATAAT TERM 1665 1302168 - 1302179 + F 90 -5.8 -5.89921 | opp_overlap 1302168 1302163 GTAATGAATATAAAA TCGC TTTG GCGA TTTTTTTATTATAAT TERM 1666 1302878 - 1302850 - g 72 -6.3 -4.26019 | opp_overlap 1302849 1302850 GAACTATACCTAAAA TAAAATCTTTT ACTAGAG AAAAGATTTTA AATTTTATATCAGAA CLH_1231 1302363 - 1303670 + | peptidase, M16 family CLH_1232 1303741 - 1304022 + | PRC-barrel domain protein TERM 1667 1304252 - 1304240 - g 74 -6.3 -4.46828 | opp_overlap 1304240 1304239 ACAAGCAAAAAAAGA TGGAT ATA ATCCA GTTGTAGTTGTTTCT TERM 1668 1304537 - 1304518 - g 80 -8 -4.18802 | ATACAGATTCTAAAA GGATATTA AATC TAATATCC CAAGGAAGGGTGCCG CLH_1233 1304145 - 1305344 + | aspartokinase 1 TERM 1669 1305405 - 1305367 - f 72 -7.5 -3.5361 | opp_overlap 1305368, overlap 1305368 1305370 TAAGTAGGTATATAA TCATTCCTTCCGTACAA AATAA TTGTATGGGAGGAATGT TTTTATGAACAATAT TERM 1670 1305368 - 1305404 + F 100 -15.4 -4.83615 | opp_overlap 1305367 1305368 1305370 AAGTAGGTATATAAT CATTCCTTCCGTACAA AATAA TTGTATGGGAGGAATG TTTTTATGAACAATA TERM 1671 1305404 - 1305368 - f 83 -11 -2.71684 | opp_overlap 1305368, overlap 1305367 1305370 AAGTAGGTATATAAT CATTCCTTCCGTACAA AATAA TTGTATGGGAGGAATG TTTTTATGAACAATA clpP 1305410 - 1306108 + | Clp protease TERM 1672 1306125 - 1306149 + F 100 -11.6 -5.95286 | opp_overlap 1306125 AATGAATTATTTAAA CAGCTATAGA AAAAA TCTATAGCTG TTTTTTATTTTTAGT TERM 1673 1306149 - 1306125 - f 95 -11.6 -3.72642 | opp_overlap 1306125 AATGAATTATTTAAA CAGCTATAGA AAAAA TCTATAGCTG TTTTTTATTTTTAGT TERM 1674 1306534 - 1306511 - g 70 -8.4 -2.63348 | opp_overlap 1306504 1306504 1306504, overlap 1306504 1306506 1306510 TTTAGGAATATTAAT GTTAATATTA ATAT TAATATTAAC TTGCGCAATTATAAA TERM 1675 1306946 - 1306936 - g 74 -2.6 -5.71712 | opp_overlap 1306936 CTGTAGATAAAAAAA TAAA GAT TTTA GATTTTATGAAAAAT ftsK 1306227 - 1308578 + | DNA translocase FtsK/SpoIIIE TERM 1676 1309561 - 1309550 - g 70 -3 -5.32599 | GATAAAATAGAAAAA CTTA GAAA TAAG ATACCGAATATTGTA CLH_1236 1308680 - 1310020 + | hypothetical protein pgsA 1310004 - 1310594 + | CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase TERM 1677 1310636 - 1310667 + F 88 -8.2 -4.88736 | TATAATTATAATAAA TTCCTTCTTTAAGA TGTA TTTTAAAGGGGGAA TTTTTATCAATACTG recA 1310754 - 1311824 + | protein RecA TERM 1678 1311833 - 1311870 + F 90 -10.9 -3.28712 | opp_overlap 1311841, overlap 1311841 1311858 TAAATAAATAGTAAT TATGAAAAGCAAAAGAA AGAT TTCTTTTGCTTTTTTTA TTATAAAAAGGCGGA TERM 1679 1311841 - 1311862 + F 100 -10.3 -5.88565 | opp_overlap 1311841, overlap 1311833 1311858 TAGTAATTATGAAAA GCAAAAGAA AGAT TTCTTTTGC TTTTTTTATTATAAA TERM 1680 1311862 - 1311841 - f 95 -10.3 -4.36411 | opp_overlap 1311841 1311833 1311858 TAGTAATTATGAAAA GCAAAAGAA AGAT TTCTTTTGC TTTTTTTATTATAAA CLH_1239 1312139 - 1313683 + | hypothetical protein TERM 1681 1313728 - 1313686 - f 100 -11 -4.86731 | opp_overlap 1313692, overlap 1313687 1313692 1313699 TTTTGCTAAATAAAA TTAAAAGATAAAATGTATAA GAA TTATACATTTTATCTTTTTT TATTTTATGCTTTAG TERM 1682 1313727 - 1313687 - f 100 -14.5 -3.51557 | opp_overlap 1313692, overlap 1313686 1313692 1313699 TTTGCTAAATAAAAT TAAAAGATAAAATGTATAA GAA TTATACATTTTATCTTTTT TTATTTTATGCTTTA TERM 1683 1313692 - 1313722 + F 100 -14.4 -6.14618 | opp_overlap 1313687 1313686 1313692 1313699 TAAATAAAATTAAAA GATAAAATGTATAA GAA TTATACATTTTATC TTTTTTTATTTTATG TERM 1684 1313722 - 1313692 - f 100 -14.4 -4.81644 | opp_overlap 1313692, overlap 1313687 1313686 1313699 TAAATAAAATTAAAA GATAAAATGTATAA GAA TTATACATTTTATC TTTTTTTATTTTATG TERM 1685 1313715 - 1313699 - f 80 -6.7 -4.93333 | opp_overlap 1313692, overlap 1313692 1313687 1313686 AATTAAAAGATAAAA TGTATAA GAA TTATACA TTTTATCTTTTTTTA spoVS 1314072 - 1314332 + | stage V sporulation protein S TERM 1686 1314654 - 1314629 - g 84 -9.1 -3.91084 | overlap 1314645 1314646 TTAGCTGTAACTAAA GATGCTGCAAT AAAA ATTTCAGCATC TGGAGATGATGAAGC CLH_1241 1314458 - 1314718 + | phosphocarrier, HPr family TERM 1687 1314726 - 1314780 + T 74 -9.1 -2.99546 | gap 2, opp_overlap 1314715 1314733, overlap 1314728 1314733 ACGATTAATATTTAT TAA-AAAAGAGATGTC-CCTAAAAC GTATGTA GATTTAGGTGACATCTCTTTTGTTA TGTGTAAATTTATAA TERM 1688 1314728 - 1314777 + T 79 -8.9 -3.63054 | gap 1, opp_overlap 1314733, overlap 1314726 1314733 GATTAATATTTATTA AAAAAGAGATGTC-CCTAAAAC GTATGTA GATTTAGGTGACATCTCTTTTG TTATGTGTAAATTTA TERM 1689 1314733 - 1314772 + T 93 -8.8 -4.87592 | gap 1, opp_overlap 1314733, overlap 1314728 1314726 ATATTTATTAAAAAA GAGATGTC-CCTAAAAC GTATGTA GATTTAGGTGACATCTC TTTTGTTATGTGTAA TERM 1690 1314772 - 1314733 - T 100 -8.8 -5.17353 | gap 1, opp_overlap 1314733 1314728 1314726 ATATTTATTAAAAAA GAGATGTC-CCTAAAAC GTATGTA GATTTAGGTGACATCTC TTTTGTTATGTGTAA CLH_1242 1315098 - 1314874 - | hypothetical protein purB 1315269 - 1316699 + | adenylosuccinate lyase TERM 1691 1316714 - 1316750 + T 100 -8.3 -5.40072 | opp_overlap 1316712 1316704 1316714 AATAATTTAAATATA TAGGATATCTTAG TTTTAATCATT CTAAGATATCCTA TTTTTTTGAAAAACA TERM 1692 1316750 - 1316714 - T 74 -8.3 -3.31779 | opp_overlap 1316714, overlap 1316712 1316704 AATAATTTAAATATA TAGGATATCTTAG TTTTAATCATT CTAAGATATCCTA TTTTTTTGAAAAACA CLH_1244 1317819 - 1316836 - | hypothetical protein TERM 1693 1317465 - 1317483 + g 77 -7.6 -4.12841 | CTTCTTCTTTATTGA CTAAAAAT ATT ATTTTTAG TTTGTGATTGATTTT CLH_1245 1318111 - 1319319 + | tetratricopeptide repeat domain protein TERM 1694 1319356 - 1319346 - f 86 -5.4 -5.69023 | AAAATATGAAAAAAA TCAC ATG GTGA CCTTTACATAATTAA TERM 1695 1319577 - 1319602 + F 100 -10.5 -5.42514 | TTAAATTGATTTGTA CCCTGAACTTA TATT TTAGTTCAGGG TTTTTTGATTTGTAA TERM 1696 1319716 - 1319703 - f 79 -3.9 -5.71983 | opp_overlap 1319715, overlap 1319715 TTAATTATAAAAAAA GATTA TTAT TAATC CCTGAAGTATTTTAC TERM 1697 1319715 - 1319739 + F 100 -12.3 -6.25741 | opp_overlap 1319703 1319715 AAAGATTATTATTAA TCCCTGAAGTA TTT TACTTTAGGGA TTTTTTTTATTCTTT TERM 1698 1319739 - 1319715 - f 85 -10.1 -3.25304 | opp_overlap 1319715, overlap 1319703 AAAGATTATTATTAA TCCCTGAAGTA TTT TACTTTAGGGA TTTTTTTTATTCTTT TERM 1699 1320206 - 1320192 - g 90 -5.8 -5.63857 | opp_overlap 1320192 AAAAATGCAAAAAAA TAAATG AGT CATTTA TTAAATATATAACAT ribD 1319786 - 1320886 + | riboflavin biosynthesis protein RibD ribE 1320901 - 1321551 + | riboflavin synthase, alpha subunit CLH_1248 1321718 - 1322911 + | riboflavin biosynthesis protein ribAB ribH 1323003 - 1323464 + | 6,7-dimethyl-8-ribityllumazine synthase CLH_1250 1324371 - 1323610 - | DNA-binding protein IolR TERM 1700 1323947 - 1323929 - G 71 -2.4 -5.45802 | CCTGTAAAAGAAAAA GTAGTTCT ATT AAACCTAC CAGATAAACATATTA CLH_1251 1324603 - 1325757 + | NAD-dependent methanol dehydrogenase TERM 1701 1325995 - 1325979 - g 72 -5.1 -4.95806 | opp_overlap 1325977 1325979 AAAGCAGCAGAAAAA GCTAAAG TAC CTGTAGC TGTTCACTTTGACCA TERM 1702 1326465 - 1326442 - g 70 -3.2 -5.29445 | opp_overlap 1326448, overlap 1326448 1326454 TGGGAATAAGAAAAA TAAATATAGC AACT GCTACTTTTA ATAAAGTAAGAGATT CLH_1252 1325763 - 1326614 + | probable fructose-bisphosphate aldolase 2 CLH_1253 1326681 - 1327700 + | protein IolC TERM 1703 1328050 - 1328036 - g 75 -5.8 -4.65584 | opp_overlap 1328042 1328045, overlap 1328031 1328042 1328045 ACAAAGCACAGAAAA TCAAAA TGA TTTTGA AGCAAAATTATATTC CLH_1254 1327716 - 1328507 + | myo-inositol catabolism protein IolB TERM 1704 1328580 - 1328564 - f 70 -7.3 -3.72576 | opp_overlap 1328564 TGTTGCGTCAGTAAA TTGACCT AAT AGGCCAA TTAAGTGGCAATTTG TERM 1705 1328898 - 1328866 - g 73 -9.1 -2.61869 | opp_overlap 1328876, overlap 1328865 GAAGAAATGAGCAAG GCATGGCACATGCAG CAA CTGCATTTGCTAAGC AAAATAATAGAAGAA TERM 1706 1328876 - 1328888 + G 73 -7.7 -3.72695 | opp_overlap 1328866 1328865 GCAAGGCATGGCACA TGCAG CAA CTGCA TTTGCTAAGCAAAAT CLH_1255 1328667 - 1330598 + | probable malonic semialdehyde oxidative decarboxylase CLH_1256 1330615 - 1331628 + | inositol 2-dehydrogenase TERM 1707 1332426 - 1332414 - g 74 -4.9 -5.18355 | GTTAAAAATGAAAAA TTAAG TTT CTTAA AAGGTGTAAGAGCTG CLH_1257 1331724 - 1332620 + | inosose dehydratase CLH_1258 1332738 - 1334330 + | Na+/myo-inositol cotransporter TERM 1708 1334352 - 1334409 + T 100 -13.9 -2.73771 | opp_overlap 1334335 1334357 1334361, overlap 1334355 1334357 1334361 TATTTTAATGTGCCT TAAAATAAAGAGGCATGAAATTTATCT AAAA AGATTTATTTCATGTCTCTTTATATTA ATTTAAAAAATATAA TERM 1709 1334355 - 1334406 + T 95 -11.2 -3.51708 | opp_overlap 1334335 1334357 1334361, overlap 1334352 1334357 1334361 TTTAATGTGCCTTAA AATAAAGAGGCATGAAATTTATCT AAAA AGATTTATTTCATGTCTCTTTATA TTAATTTAAAAAATA TERM 1710 1334357 - 1334404 + T 100 -13.8 -3.33151 | opp_overlap 1334335 1334357 1334361, overlap 1334355 1334352 1334361 TAATGTGCCTTAAAA TAAAGAGGCATGAAATTTATCT AAAA AGATTTATTTCATGTCTCTTTA TATTAATTTAAAAAA TERM 1711 1334404 - 1334357 - T 100 -11.6 -4.08692 | opp_overlap 1334355 1334352 1334357 1334361, overlap 1334335 1334361 TAATGTGCCTTAAAA TAAAGAGGCATGAAATTTATCT AAAA AGATTTATTTCATGTCTCTTTA TATTAATTTAAAAAA TERM 1712 1334400 - 1334361 - T 83 -8 -4.64861 | opp_overlap 1334357 1334355 1334352 1334361, overlap 1334357 GTGCCTTAAAATAAA GAGGCATGAAATTTATCT AAAA AGATTTATTTCATGTCTC TTTATATTAATTTAA TERM 1713 1334361 - 1334400 + T 95 -10.2 -4.31 | opp_overlap 1334361 1334357, overlap 1334357 1334355 1334352 GTGCCTTAAAATAAA GAGGCATGAAATTTATCT AAAA AGATTTATTTCATGTCTC TTTATATTAATTTAA CLH_1259 1334755 - 1334576 - | hypothetical protein CLH_1260 1336518 - 1334920 - | exoenzyme regulatory protein AepA CLH_1261 1336699 - 1336935 + | hypothetical protein CLH_1262 1337022 - 1337627 + | nudix-family hydrolase TERM 1714 1337748 - 1337726 - T 100 -9.9 -5.39755 | opp_overlap 1337726, overlap 1337716 TAGAAGCATAAAAAA TGCAGGAGC TTTTT ACTCCTGCA TTTTTATTTTATATA TERM 1715 1337726 - 1337748 + T 100 -9.2 -5.58522 | opp_overlap 1337716 1337726 TAGAAGCATAAAAAA TGCAGGAG CTTTTTA CTCCTGCA TTTTTATTTTATATA CLH_1263 1339056 - 1337764 - | xanthine/uracil permease family protein TERM 1716 1339157 - 1339136 - H 100 -7.5 -5.56673 | opp_overlap 1339135 1339136 1339149 1339151, overlap 1339151 ATCCATAATAAAAAA TTCAATATA AATG TATATTGAA AATATTTTTTTGGTA TERM 1717 1339151 - 1339161 + H 70 -2.6 -5.52986 | opp_overlap 1339136 1339151, overlap 1339136 1339135 1339149 TTCAATATAAATGTA TATT GAA AATA TTTTTTTGGTAGACT CLH_1264 1339764 - 1340327 + | hypothetical protein TERM 1718 1340445 - 1340409 - f 73 -7.6 -3.69613 | gap 1, opp_overlap 1340405 1340409 AAATACAAAGGATAA CTTCCTTTCTTTGAGTA AAAA TA-TTAAAGAAAGGAAG TGTAGTTTATGTCTA TERM 1719 1340409 - 1340445 + F 82 -9.8 -3.09766 | gap 1, opp_overlap 1340409, overlap 1340405 AAATACAAAGGATAA CTTCCTTTCTTTGAGTA AAAA TATT-AAAGAAAGGAAG TGTAGTTTATGTCTA CLH_1265 1340454 - 1340594 + | hypothetical protein TERM 1720 1340816 - 1340787 - T 85 -8.1 -4.72617 | opp_overlap 1340787 TGATAAAATAAGAAA TGAAGTAATCT AAATTTAG AGATTACTTCA TTTTTTTTATTTGCT TERM 1721 1340787 - 1340816 + T 100 -8.1 -6.25578 | opp_overlap 1340787 TGATAAAATAAGAAA TGAAGTAATCT AAATTTAG AGATTACTTCA TTTTTTTTATTTGCT TERM 1722 1340938 - 1340951 + T 80 -2.5 -6.00086 | opp_overlap 1340938 ATGAACTTTATTATA TAATA TGAA TATTA TTTTTTTTATAGTAT CLH_1266 1342321 - 1340975 - | voltage-gated chloride channel TERM 1723 1342400 - 1342358 - H 100 -21.7 -5.2853 | opp_overlap 1342361 TATTTAAAAACAAAA TGACTCCTACAAAAAACAG TATAC CCGTTTTTTGTAGGAGTCA TTAGCATTACGCGTT TERM 1724 1342361 - 1342397 + H 100 -15.4 -2.75481 | opp_overlap 1342358 TTAAAAACAAAATGA CTCCTACAAAAAACAG TATAC CCGTTTTTTGTAGGAG TCATTAGCATTACGC TERM 1725 1343117 - 1343107 - H 80 -2.6 -6.11392 | AAATAAATAAAAAAA TATT GAC AATA TACGAATAAAAGAAT TERM 1726 1343397 - 1343428 + H 100 -10.3 -5.61596 | overlap 1343387 TACCGCAGAGTTTTT GACTTTGTCTCTA AATTAA TAGAGGCAAGGTC TTTTTTTATAAAAAT CLH_1267 1343484 - 1344557 + | glycerol dehydrogenase CLH_1268 1344643 - 1345203 + | teichoic acid phosphorylcholine esterase TERM 1727 1345478 - 1345431 - T 89 -8.8 -4.61566 | opp_overlap 1345436, overlap 1345436 TTTTAAATTATAAAA TTAAAGTTCTAAACTTTACT TGAATTTG AGTAAAGTTTAGAACTTTTT TAGTTTTCATCTAAT TERM 1728 1345473 - 1345436 - T 100 -13.1 -4.29391 | opp_overlap 1345436, overlap 1345431 AATTATAAAATTAAA GTTCTAAACTTTACT TGAATTTG AGTAAAGTTTAGAAC TTTTTTAGTTTTCAT TERM 1729 1345436 - 1345473 + T 100 -14.5 -5.48054 | opp_overlap 1345436 1345431 AATTATAAAATTAAA GTTCTAAACTTTACTTG AATT TGAGTAAAGTTTAGAAC TTTTTTAGTTTTCAT CLH_1269 1346195 - 1345572 - | hypothetical protein TERM 1730 1347795 - 1347780 - g 70 -6.2 -4.12532 | TGTGTTATACAGAAA CTATCT GAAA AGATAG GAGAAATTTCGCCAG leuA 1346547 - 1348226 + | 2-isopropylmalate synthase TERM 1731 1348287 - 1348325 + T 75 -7.6 -4.01078 | overlap 1348291 TAAAATAACTTTTAA TAAACCTGAAAGAATATG AAA TAAAATCTTTCGGGTTTA TTTATGATGAATTTT CLH_1271 1349164 - 1348514 - | hypothetical protein CLH_1272 1349480 - 1350337 + | DNA repair exonuclease family protein TERM 1732 1351448 - 1351423 - g 73 -5.5 -4.68994 | opp_overlap 1351427 ATTATTAGTTAAAAA CACATGGATTG ATGA CAATACATATG TTCAACCTAATGGAG CLH_1273 1350458 - 1351933 + | cell wall binding repeat protein CLH_1274 1352192 - 1353223 + | aminopeptidase, M42 family TERM 1733 1353277 - 1353245 - f 100 -12.3 -5.00138 | opp_overlap 1353245 TATTTAAAGTAAAAA GCTGTTTCAAATT AAATAAA AATTTGAAACAGC TTTTTATTGTGTAGA TERM 1734 1353245 - 1353277 + F 100 -12.3 -5.24796 | opp_overlap 1353245 TATTTAAAGTAAAAA GCTGTTTCAAATT AAATAAA AATTTGAAACAGC TTTTTATTGTGTAGA CLH_1275 1353567 - 1353797 + | hypothetical protein TERM 1735 1353832 - 1353801 - T 83 -7.4 -5.0916 | opp_overlap 1353801 1353803, overlap 1353803 TTTTCAATATAAAAA TGGTTAGAACTCTA GAAA TAGGGTTCTAACTA TTTTTTTATTTAAAT TERM 1736 1353801 - 1353832 + T 100 -11.8 -5.96894 | opp_overlap 1353801 1353803, overlap 1353803 TTTTCAATATAAAAA TGGTTAGAACTCTA GAAA TAGGGTTCTAACTA TTTTTTTATTTAAAT TERM 1737 1353803 - 1353830 + T 100 -12.2 -4.61687 | opp_overlap 1353801 1353803, overlap 1353801 TTCAATATAAAAATG GTTAGAACTCTA GAAA TAGGGTTCTAAC TATTTTTTTATTTAA TERM 1738 1353830 - 1353803 - T 80 -10 -2.78141 | opp_overlap 1353803 1353801, overlap 1353801 TTCAATATAAAAATG GTTAGAACTCTA GAAA TAGGGTTCTAAC TATTTTTTTATTTAA CLH_1276 1355061 - 1354075 - | Fe-S oxidoreductase TERM 1739 1354824 - 1354796 - G 70 -6.3 -4.11027 | opp_overlap 1354805, overlap 1354805 1354817 TTATCAAAAACATAA TCAAAAAAATTTA TAG TAAACTTTTTTAA AAAATTAGGATTTAC TERM 1740 1354815 - 1354805 - G 74 -2.6 -5.69379 | opp_overlap 1354805, overlap 1354796 ACATAATCAAAAAAA TTTA TAG TAAA CTTTTTTAAAAAATT CLH_1277 1355295 - 1356656 + | mate efflux family protein TERM 1741 1356663 - 1356690 + T 100 -12.2 -5.66338 | opp_overlap 1356663 GAAATATAAAAAAAA GTTGTATCTTGA CTAA TCGAGATACAAC TTTTTTATTATGTTT TERM 1742 1356690 - 1356663 - T 100 -10 -6.15717 | opp_overlap 1356663 GAAATATAAAAAAAA GTTGTATCTTGA CTAA TCGAGATACAAC TTTTTTATTATGTTT CLH_1278 1357189 - 1356800 - | hypothetical protein CLH_1279 1357371 - 1358327 + | cobalamin synthesis protein CobW CLH_1280 1358342 - 1358998 + | hypothetical protein CLH_1281 1359069 - 1359992 + | transporter TERM 1743 1360073 - 1360112 + T 73 -7.4 -4.14724 | gap 1, opp_overlap 1360073 TGTTTATACAAATAA GAGGTTGCTTTCA-TATTA ATT TATTAGTGAAAACAACCTC TTTAATGTTTTATTT TERM 1744 1360112 - 1360073 - T 86 -9.6 -4.14627 | gap 1, opp_overlap 1360073 TGTTTATACAAATAA GAGGTTGCTTTCA-TATTA ATT TATTAGTGAAAACAACCTC TTTAATGTTTTATTT CLH_1282 1360520 - 1360122 - | hemerythrin binding domain protein TERM 1745 1360253 - 1360234 - G 71 -4.4 -4.82901 | opp_overlap 1360234 1360228 TTTTCTTTATAAAAA TTAGATAC ATTA ATATCTAA TATTTGTTTTTTGAA TERM 1746 1360827 - 1360866 + r 100 -11.1 -5.35459 | opp_overlap 1360827 TGCCTAAATAAAAAA CATCGGAT-ATAGGTAGCA ATAT TG-TACCTATTATCCGATG TTTTTTATAGTATAT TERM 1747 1360866 - 1360827 - R 100 -11.1 -5.63517 | opp_overlap 1360827 TGCCTAAATAAAAAA CATCGGAT-ATAGGTAGCA ATAT TG-TACCTATTATCCGATG TTTTTTATAGTATAT CLH_1283 1361464 - 1360904 - | putative lipoprotein TERM 1748 1361205 - 1361224 + g 100 -9.4 -5.01732 | TTGTCACCATCTGTG CTTTTAGG ATTT CCTAAAAG TTTTTTAACAGCATT CLH_1284 1362503 - 1361595 - | integral membrane protein domain protein TERM 1749 1362368 - 1362356 - G 77 -6.3 -4.80178 | opp_overlap 1362356 GATGAATTAATAAAA GCATA ATA TATGC TATTGAAAATCTAAG CLH_1285 1362701 - 1362910 + | hypothetical protein TERM 1750 1362928 - 1362957 + T 95 -12.3 -3.83568 | opp_overlap 1362913 1362934, overlap 1362934 1362954 TTTTAGCTTTTACCT AAAAAACAGTGGC TATA GCCACTGTTTTTA TTCTTATAAATATAA TERM 1751 1362951 - 1362934 - T 100 -11.3 -5.08824 | opp_overlap 1362928 1362934 CTTTTACCTAAAAAA CAGTGGC TATA GCCACTG TTTTTATTCTTATAA TERM 1752 1362934 - 1362951 + T 100 -11.3 -5.34365 | opp_overlap 1362934, overlap 1362928 CTTTTACCTAAAAAA CAGTGGC TATA GCCACTG TTTTTATTCTTATAA CLH_1286 1364181 - 1363033 - | ATP-dependent RNA helicase TERM 1753 1363809 - 1363825 + g 77 -5.2 -5.04222 | CAACTATTATATGAG GCTTAA CTTCT TTAAGC TTTTTAATTTGATTA CLH_1287 1364496 - 1365938 + | ATP-dependent RNA helicase DbpA TERM 1754 1366089 - 1366060 - f 80 -8.1 -4.23213 | opp_overlap 1366059 1366065, overlap 1366065 GTTATACTGAATAAA GAAAAGTGATT AGTTAAAG AATCACTTTTC AAATTTCTTTATATA TERM 1755 1366356 - 1366340 - g 81 -7.3 -4.67641 | AGTTTAAAATTAAAA GGTGAAA TTG TTCCACC GAGAGAAGTAATAAA map 1366238 - 1367107 + | methionine aminopeptidase, type I TERM 1756 1367207 - 1367243 + F 100 -14.1 -5.38951 | opp_overlap 1367207 1367209, overlap 1367200 TAATTGTTTAATAGA TACTCTCTTATGTTT AAAACAA AAACATAAGAGAGTA TTTTTTGTATGAGTT TERM 1757 1367243 - 1367207 - f 100 -14.1 -3.0782 | opp_overlap 1367200 1367207, overlap 1367209 TAATTGTTTAATAGA TACTCTCTTATGTTT AAAACAA AAACATAAGAGAGTA TTTTTTGTATGAGTT TERM 1758 1367241 - 1367209 - f 90 -12.3 -3.09452 | opp_overlap 1367200 1367207, overlap 1367207 ATTGTTTAATAGATA CTCTCTTATGTTT AAAACAA AAACATAAGAGAG TATTTTTTGTATGAG CLH_1289 1367362 - 1367499 + | hypothetical protein TERM 1759 1367534 - 1367570 + F 100 -9.6 -5.28826 | opp_overlap 1367502 1367536, overlap 1367536 GTGCCTCCACCATAA AACCCACGAAAATC ATTTTATTG GATTTTCGTGGGTA TTTTTTATGAAATTT TERM 1760 1367568 - 1367536 - f 100 -12.2 -4.46212 | opp_overlap 1367536 1367534, overlap 1367502 GCCTCCACCATAAAA CCCACGAAAATC ATTTTATTG GATTTTCGTGGG TATTTTTTATGAAAT TERM 1761 1367536 - 1367568 + F 100 -12.2 -4.26475 | opp_overlap 1367502 1367536, overlap 1367534 GCCTCCACCATAAAA CCCACGAAAATC ATTTTATTG GATTTTCGTGGG TATTTTTTATGAAAT CLH_1290 1367673 - 1369091 + | hypothetical protein CLH_1291 1369084 - 1369770 + | hypothetical protein TERM 1762 1370316 - 1370300 - g 88 -5.3 -5.70761 | opp_overlap 1370301 AAAAGAAAAGAAAAA TTAAATA CTT TATTTAA TATGGAGAAGGAATG TERM 1763 1371161 - 1371148 - g 71 -3.9 -5.06961 | ACTAATAAAAACAAA TAAAG AAAA CTTTA TAACGCCAATACTAG TERM 1764 1371732 - 1371713 - g 82 -9.4 -3.3879 | overlap 1371700 1371711 AAGGTACTTCAAATA CCACTATA TATA TATAGTGG GAAAATAATACAGGA CLH_1292 1369772 - 1372141 + | putative RecF/RecN/SMC N domain TERM 1765 1372246 - 1372278 + F 100 -10.9 -5.28983 | opp_overlap 1372217 1372246 TTATCATATAATAAA GAATATTTAAAGC AGGGAAA GCTTTAAATATTC TTTTTCTGTTTTAGG TERM 1766 1372278 - 1372246 - f 100 -10.9 -4.41114 | opp_overlap 1372246, overlap 1372217 TTATCATATAATAAA GAATATTTAAAGC AGGGAAA GCTTTAAATATTC TTTTTCTGTTTTAGG CLH_1293 1372304 - 1372729 + | hypothetical protein TERM 1767 1373726 - 1373689 - g 70 -5.2 -4.62163 | opp_overlap 1373712, overlap 1373712 ATAGAAAAAGATAAA TTAATAAAATCTATAC ATAAAA ATATAGATTATATTAA TAGAACAAAGTCAAA CLH_1294 1373038 - 1374993 + | hypothetical protein CLH_1295 1375077 - 1375757 + | hypothetical protein TERM 1768 1375846 - 1375892 + F 100 -13.5 -3.51137 | opp_overlap 1375853, overlap 1375853 CTCCACCATTAAACC CACGAAAGATATATTAACATA CAAGA TATGTTAATATATCTTTTTTG TTGTATGAAATAATT TERM 1769 1375853 - 1375885 + F 100 -12.4 -5.60689 | opp_overlap 1375853, overlap 1375846 ATTAAACCCACGAAA GATATATTAACATA CAAGA TATGTTAATATATC TTTTTTGTTGTATGA TERM 1770 1375885 - 1375853 - f 100 -13.1 -3.82499 | opp_overlap 1375853 1375846 ATTAAACCCACGAAA GATATATTAACATAC AAG ATATGTTAATATATC TTTTTTGTTGTATGA TERM 1771 1376082 - 1376115 + F 79 -9 -3.53563 | opp_overlap 1376082 1376086, overlap 1376086 AAATAGTAATATTAA GAAAGCACATCGAA GTAACA TTCAGTGTGCTTTC TTTAGGAAAAAATAT TERM 1772 1376115 - 1376082 - f 77 -9 -3.42581 | opp_overlap 1376082 1376086, overlap 1376086 AAATAGTAATATTAA GAAAGCACATCGAA GTAACA TTCAGTGTGCTTTC TTTAGGAAAAAATAT CLH_1296 1376415 - 1377671 + | Zn-dependent hydrolase TERM 1773 1378698 - 1378680 - g 70 -7.6 -3.41002 | opp_overlap 1378680 1378678 ATAACACTGAATTAA TTGAAAAT ATT ATTTTCAA TCTTATAGATACATG CLH_1297 1377650 - 1378747 + | hypothetical protein CLH_1298 1378751 - 1379254 + | putative lipoprotein CLH_1299 1379256 - 1381139 + | hypothetical protein TERM 1774 1381408 - 1381429 + F 77 -7.3 -4.51847 | opp_overlap 1381412 GGATGAACAGCATCA TCAACACAC TTTA GTGAGTTGA TTTTCTAACTTGTTT CLH_1300 1381624 - 1382097 + | MerR-family transcriptional regulator TERM 1775 1382856 - 1382832 - g 70 -2.9 -5.30616 | overlap 1382855 TGACTTAAATAAAAA TATTGCTACAA CTT TAGTAGGAATA TTACCAATAGAAGAA TERM 1776 1383206 - 1383190 - g 79 -9.5 -3.26405 | opp_overlap 1383190, overlap 1383188 1383187 TGGATTGAAAAAGTA GTTCCAA CAG TTGGAAC TGTAGTAGAAGATTT TERM 1777 1383190 - 1383206 + G 77 -9.5 -2.79312 | opp_overlap 1383190 1383188 1383187 TGGATTGAAAAAGTA GTTCCAA CAG TTGGAAC TGTAGTAGAAGATTT moaF 1382518 - 1383327 + | MoaF protein CLH_1302 1383503 - 1383625 + | transposase and inactivated derivative CLH_1303 1383757 - 1383876 + | hypothetical protein TERM 1778 1384079 - 1384044 - f 83 -7.7 -4.67234 | opp_overlap 1384044 ATGTAATTTTAAAAA TGCACCCATCTTA TGTATTTTAT TAAGGTGGGTGCA TTTTTTAGGTGAGGG TERM 1779 1384044 - 1384079 + F 100 -11.4 -5.08824 | gap 1, opp_overlap 1384044 ATGTAATTTTAAAAA TGCACCCATCTTATGTA TTT TAT-TAAGGTGGGTGCA TTTTTTAGGTGAGGG CLH_1304 1384204 - 1384464 + | hypothetical protein CLH_1305 1384579 - 1384854 + | hypothetical protein CLH_1306 1384993 - 1385388 + | hypothetical protein TERM 1780 1386046 - 1386072 + F 80 -9.6 -3.2614 | opp_overlap 1386036 1386046 1386053 1386054, overlap 1386053 GGAGATATAATGAAA TCATAAATTGGT CAT ACCTATTTATGA TTGGTATGACAAGTA TERM 1781 1386072 - 1386046 - f 86 -9.6 -4.06361 | opp_overlap 1386046 1386053, overlap 1386036 1386053 1386054 GGAGATATAATGAAA TCATAAATTGGT CAT ACCTATTTATGA TTGGTATGACAAGTA CLH_1307 1386210 - 1386995 + | electron transfer flavoprotein beta-subunit CLH_1308 1387017 - 1387955 + | electron transfer flavoprotein alpha-subunit TERM 1782 1389677 - 1389653 - g 70 -8.7 -2.71924 | overlap 1389652 1389655 GATTTGCCCTCAAAG TATTGCAATTG GCG CAAGTGCAATA GGCAAATCTGGTTCG lctP 1388238 - 1389788 + | L-lactate permease CLH_1310 1389943 - 1391379 + | oxidase, FAD-binding CLH_1311 1391554 - 1392693 + | acyl-coa dehydrogenase, short-chain specific TERM 1783 1392797 - 1392752 - T 72 -8.7 -2.50991 | gap 1, opp_overlap 1392757, overlap 1392757 ATTTAAATAAACTAT GAAAATAACAAGTTCAACTATA TAT TATAGG-GAACTTGTTATTTTT TATGTCTTTAATTAT TERM 1784 1392757 - 1392792 + T 100 -8.6 -5.51046 | gap 1, opp_overlap 1392752 1392757 AATAAACTATGAAAA TAACAAGTTCAACTATA TAT TATAGG-GAACTTGTTA TTTTTTATGTCTTTA TERM 1785 1392792 - 1392757 - T 82 -8.6 -4.41897 | gap 1, opp_overlap 1392757, overlap 1392752 AATAAACTATGAAAA TAACAAGTTCAACTATA TAT TATAGG-GAACTTGTTA TTTTTTATGTCTTTA CLH_1312 1394671 - 1392932 - | ABC transporter, ATP-binding protein TERM 1786 1393071 - 1393086 + g 72 -4.8 -4.97402 | opp_overlap 1393071 TAATCTTTGTTAAAA TGATTT GCAT AAATCA TTTTTCTAAATTTTC TERM 1787 1394720 - 1394701 - H 74 -5 -5.1925 | opp_overlap 1394701, overlap 1394703 CTATAACTTAAAAAA GAGCTTAT AAAA ATAAGCGC TTTAATATATTCTTA TERM 1788 1394718 - 1394703 - H 70 -6.2 -4.21792 | opp_overlap 1394701, overlap 1394701 ATAACTTAAAAAAGA GCTTAT AAAA ATAAGC GCTTTAATATATTCT TERM 1789 1394992 - 1394982 - H 73 -2.6 -5.68489 | opp_overlap 1394982 TACAAGAATAAAAAA TAAA ATT TTTA TGTATGTACAAATTT katG 1395028 - 1397220 + | catalase/peroxidase HPI TERM 1790 1397405 - 1397365 - f 80 -10.1 -2.8084 | opp_overlap 1397370, overlap 1397370 AGAAATATTTAACTA TAAAAGTATGATTTTAATA TTT TATTAAAGTCATACTTTTT AAATTTTCTCGTAAA TERM 1791 1397400 - 1397370 - f 100 -10 -4.55491 | opp_overlap 1397370, overlap 1397365 TATTTAACTATAAAA GTATGATTTTAATA TTT TATTAAAGTCATAC TTTTTAAATTTTCTC TERM 1792 1397370 - 1397400 + F 100 -12.2 -4.89729 | opp_overlap 1397370 1397365 TATTTAACTATAAAA GTATGATTTTAATA TTT TATTAAAGTCATAC TTTTTAAATTTTCTC TERM 1793 1398035 - 1398022 - g 74 -6.7 -4.39092 | opp_overlap 1398021 1398022 AAAGCAAAAATGAAA GATGC AATT GCATC CTTTGAGAATCAAGA CLH_1314 1397875 - 1398852 + | PTS system, mannose/fructose/sorbose family, IIB component TERM 1794 1398869 - 1398850 - f 76 -2.2 -5.86609 | overlap 1398853 TTAAAAAAACAAAAA TAATCTAA GTAT TTAGATAA AAAGGAGGATTAATA TERM 1795 1399314 - 1399330 + G 74 -8.1 -3.57615 | GCTATTGAAATGTGG CAAATAG CTG CTATTTG TTTACAAGGTATTCG CLH_1315 1398888 - 1399691 + | PTS system sorbose-specific iic component CLH_1316 1399678 - 1400622 + | PTS system, mannose/fructose/sorbose family, IID component TERM 1796 1400636 - 1400656 + F 100 -13.3 -4.66987 | AATATTTTTTCCTTA GCCTAGGCT TTT AGCCTGGGC TTTTGTTAACATGTA CLH_1317 1400829 - 1401203 + | hypothetical protein TERM 1797 1401307 - 1401324 + F 80 -6.3 -5.25893 | GATTCTTTTTCGAGA GGTTAGA GTAA TCTAGCC TTTTTTCATCTATAT TERM 1798 1401355 - 1401390 + F 100 -12.1 -4.55128 | opp_overlap 1401355 1401358 TTTATATTTACCACA TAACTCACGAAAACC TAAATT GATTTTCGTGAGTTA TTTTAGTTTAGAGAT TERM 1799 1401390 - 1401355 - f 100 -14.3 -2.82015 | opp_overlap 1401355, overlap 1401358 TTTATATTTACCACA TAACTCACGAAAACC TAAATT GATTTTCGTGAGTTA TTTTAGTTTAGAGAT TERM 1800 1401387 - 1401358 - f 95 -11.6 -3.55714 | opp_overlap 1401355, overlap 1401355 ATATTTACCACATAA CTCACGAAAACC TAAATT GATTTTCGTGAG TTATTTTAGTTTAGA modA 1401664 - 1402458 + | molybdate ABC transporter, periplasmic molybdate-binding protein CLH_1319 1402508 - 1403317 + | hypothetical protein CLH_1320 1403338 - 1404375 + | spermidine/putrescine import ATP-binding protein PotA CLH_1321 1404397 - 1405131 + | hypothetical protein TERM 1801 1405224 - 1405257 + F 100 -9.1 -6.37666 | opp_overlap 1405224 AAGTTTAAATAAAAA TGATTCGAGATGATT TTTA AGTCATTTTGAATCA TTTTTTTTGTTTTAT TERM 1802 1405360 - 1405350 - f 70 -4 -5.11033 | opp_overlap 1405350 GACAAGGTTAAAAAA CATT ATA AATG CTATTATAGAGTTGA TERM 1803 1405517 - 1405531 + G 81 -8.6 -4.19577 | ATAGGTTTTTTAGTA GCTTTC ACT GAAAGC TTCTTTTCACCATTA CLH_1322 1405442 - 1406029 + | snare associated golgi protein TERM 1804 1406239 - 1406285 + F 100 -14.9 -5.72207 | gap 1, opp_overlap 1406239 CCAGGAACCGTAAAA TCCTGATTACAAAGAAA-AGGA TACG TCTTTTTTCTTTGTAGTCAGGA TTTTTTTAATTTAAA TERM 1805 1406285 - 1406239 - f 95 -10.5 -4.20696 | gap 1, opp_overlap 1406239 CCAGGAACCGTAAAA TCCTGATTACAAAGAA-AAGGA TACG TCTTTTTTCTTTGTAGTCAGGA TTTTTTTAATTTAAA TERM 1806 1407812 - 1407796 - g 70 -8.1 -3.09516 | GTTTTTAGCAGTTAA TCATCTT AAA AAGATGA ATGGAGGAATTGCAA ade 1406336 - 1408081 + | adenine deaminase TERM 1807 1408206 - 1408249 + T 100 -15.8 -2.92389 | opp_overlap 1408197 1408199 1408207 GTGAAATAGTTATGA ATTTTTATTGATGTTATTTC TTGG GAAATAACATCAATAAAAAG TATATAAGTAACTTC TERM 1808 1408248 - 1408207 - T 100 -19.3 -3.23638 | opp_overlap 1408206, overlap 1408197 1408199 TGAAATAGTTATGAA TTTTTATTGATGTTATTTC TTGG GAAATAACATCAATAAAAA GTATATAAGTAACTT TERM 1809 1408288 - 1408257 - T 84 -9.6 -3.72941 | opp_overlap 1408257 ATAAAAAGTATATAA GTAACTTCATCATA GTGT CATGATGAAGTTGC TTTAAATATAATTAA TERM 1810 1408257 - 1408288 + T 95 -11.1 -3.74158 | opp_overlap 1408257 ATAAAAAGTATATAA GTAACTTCATCAT AGTGTC ATGATGAAGTTGC TTTAAATATAATTAA asnB 1409936 - 1408347 - | asparagine synthase (glutamine-hydrolyzing) TERM 1811 1410048 - 1410017 - R 100 -11 -5.7946 | overlap 1410041 TTTGTAATAAAAAAA GCCCTTCATCCTAT AAAC ATAGGACGAAAGAC TTAAACTTCCGTGGT TERM 1812 1410529 - 1410519 - R 78 -5.4 -5.1287 | TGCATAGCTAAAAAA TGCA CGG TGCA AAAGTTGTCTTAGGG CLH_1325 1411934 - 1410612 - | hypothetical protein TERM 1813 1411945 - 1411957 + H 80 -6.3 -5.14163 | TTCATATATAGTCCT CTCAT TTC ATGAG TTTTTATTAGTACAT CLH_1326 1412463 - 1413251 + | hypothetical protein TERM 1814 1413282 - 1413316 + F 100 -9.5 -5.68023 | opp_overlap 1413282 AAATGTTATTATTAA GCCAATTGTTTAGAG AAAAA TTCTAAATAGTTGGC TTTTTTTAGTTGTAA TERM 1815 1413930 - 1413943 + G 71 -2.4 -5.39221 | TGATTCTGATTATGG TCAG ACATTA CTGA TTTTTTCATTATTAT CLH_1327 1413451 - 1414890 + | trk system potassium uptake protein TrkA TERM 1816 1415016 - 1415037 + F 91 -8.1 -5.00616 | opp_overlap 1415015 1415016, overlap 1415018 TGCATTATAATAAAG TTCACGATA GATA TATCGTGGA TTTTTTGCGACAAAA CLH_1328 1415276 - 1415446 + | hypothetical protein TERM 1817 1416500 - 1416490 - g 70 -5.4 -4.62051 | AAATATTACAGAAAA TCCA TTA TGGA GAGGAAGCGAACCTA CLH_1329 1415600 - 1417045 + | dolichyl-phosphate-mannose-protein mannosyltransferase TERM 1818 1417095 - 1417064 - f 74 -8.8 -3.06501 | opp_overlap 1417064 TATAGTTTTATGCAA TCCACGAAGATTCA ATAA TGATTTTTCGTGGA TTTTTAGTTAGTACT TERM 1819 1417064 - 1417095 + F 100 -11 -4.90869 | opp_overlap 1417064 TATAGTTTTATGCAA TCCACGAAGATTCA ATAA TGATTTTTCGTGGA TTTTTAGTTAGTACT CLH_1330 1417237 - 1417656 + | MarR-family transcriptional regulator CLH_1331 1417656 - 1419074 + | MDR-type permease TERM 1820 1419104 - 1419157 + F 100 -20.8 -5.10933 | opp_overlap 1419104 1419106 CCTACGGAAATGATA TACTTCCCCTATTGAAACAGTT AAAATAATAA AACTGTTTCAATAGGGGGAGTA TTTTGTTTTGGGTCG TERM 1821 1419157 - 1419104 - f 100 -18.6 -3.02324 | opp_overlap 1419104, overlap 1419106 CCTACGGAAATGATA TACTTCCCCTATTGAAACAGTT AAAATAATAA AACTGTTTCAATAGGGGGAGTA TTTTGTTTTGGGTCG TERM 1822 1419155 - 1419106 - f 100 -16.8 -3.06483 | opp_overlap 1419104, overlap 1419104 TACGGAAATGATATA CTTCCCCTATTGAAACAGTT AAAATAATAA AACTGTTTCAATAGGGGGAG TATTTTGTTTTGGGT TERM 1823 1419552 - 1419532 - g 70 -8.5 -2.54059 | opp_overlap 1419532, overlap 1419531 1419529 CATATATAGGAACAC TTATGAAAA ATT TTTTCATAA TATTGATAAATATTT TERM 1824 1419532 - 1419552 + G 74 -8.5 -3.17608 | opp_overlap 1419532 1419531 1419529 CATATATAGGAACAC TTATGAAAA ATT TTTTCATAA TATTGATAAATATTT TERM 1825 1420208 - 1420220 + G 70 -4.9 -4.76041 | opp_overlap 1420208 GAATTATTAAAAGAT TTTCA TGA TGAAA TTTTTAATAAATATA CLH_1332 1419476 - 1420441 + | dihydrouridine synthase family protein TERM 1826 1420682 - 1420667 - f 70 -3.2 -5.42131 | opp_overlap 1420667 TAACTATACAAAAAA GCCTCA GTAT TTAGGC TTTTTAATTACATAC CLH_1333 1420701 - 1420895 + | hypothetical protein CLH_1334 1421167 - 1422642 + | hypothetical protein TERM 1827 1422944 - 1422928 - g 73 -8.1 -3.35849 | overlap 1422926 GTTAGTAAAGTAACA TTTGGTT CTG AACCAAA GGAAGCAGAAATTTT CLH_1335 1422826 - 1423245 + | hypothetical protein TERM 1828 1423476 - 1423506 + F 100 -8.3 -5.41746 | opp_overlap 1423462 1423478, overlap 1423478 ACATTAAATGTATTT AATGGGATACGCT TATAT GGCGTGTCCCATA TTTTTTTGCAAAGTT TERM 1829 1423478 - 1423504 + F 100 -10.9 -4.34482 | opp_overlap 1423462 1423478, overlap 1423476 ATTAAATGTATTTAA TGGGATACGCT TATAT GGCGTGTCCCA TATTTTTTTGCAAAG CLH_1336 1423567 - 1424193 + | thiamine transporter protein CLH_1337 1424165 - 1424818 + | tena/thi-4 family TERM 1830 1424881 - 1424901 + F 100 -9.1 -5.18355 | opp_overlap 1424876 1424881 TATTAAACTATAAAA TCCACAGTA TTA TATTGTGGA TTTTTACTTTTTAAA TERM 1831 1424901 - 1424881 - f 77 -6.9 -4.63172 | opp_overlap 1424881, overlap 1424876 TATTAAACTATAAAA TCCACAGTA TTA TATTGTGGA TTTTTACTTTTTAAA TERM 1832 1425944 - 1425931 - g 76 -8.1 -3.75832 | opp_overlap 1425931 1425931 1425932, overlap 1425925 1425932 AAAATTAGAGCTAAA GCAGC AGCG GCTGC TGGTTCTGATGCGCG TERM 1833 1425946 - 1425932 - g 80 -10 -2.84414 | opp_overlap 1425931 1425932 1425931, overlap 1425925 1425931 AAATTAGAGCTAAAG CAGCAG CGG CTGCTG GTTCTGATGCGCGTA TERM 1834 1425932 - 1425946 + G 78 -10 -2.64416 | opp_overlap 1425925 1425931 1425932, overlap 1425931 1425931 AAATTAGAGCTAAAG CAGCAG CGG CTGCTG GTTCTGATGCGCGTA CLH_1338 1425211 - 1426488 + | hypothetical protein TERM 1835 1427316 - 1427282 - g 72 -7.4 -3.92659 | opp_overlap 1427285, overlap 1427285 TTTTCAAAAGTTAAA TAATATGTTAAAGGAC TTT GTTTTTTAACATATTA ACTATAGTGATTTTC CLH_1339 1426557 - 1427309 + | DnaJ domain protein TERM 1836 1427285 - 1427313 + F 75 -9.1 -3.15212 | opp_overlap 1427282 1427285 TCAAAAGTTAAATAA TATGTTAAAGGAC TTT GTTTTTTAACATA TTAACTATAGTGATT TERM 1837 1427392 - 1427426 + F 85 -6 -5.60993 | gap 1, opp_overlap 1427392 1427398 AATATAACATAATTA GAAATACTT-AAAGC AATATA GCTTTTAGGTATTTC TTTTTTTATAAAAAA TERM 1838 1427923 - 1427936 + G 74 -3.9 -5.28826 | GAGACAAATTAGCAT TAAAG TTAA CTTTA TTTTTTATGACATTT CLH_1340 1427685 - 1428890 + | transporter, major facilitator family TERM 1839 1428948 - 1428938 - f 79 -4 -5.68023 | CCATAACGAAAAAAA CATA GTA TATG CATAACAGCTGCTCT TERM 1840 1429956 - 1429970 + G 80 -5.8 -5.04249 | opp_overlap 1429944 1429942, overlap 1429942 GTATAGTAATTTTCA CTATAA TTA TTATAG TTTATTTTTTAGGAG CLH_1341 1429010 - 1430236 + | transporter, major facilitator family TERM 1841 1430228 - 1430254 + F 100 -7.5 -5.75538 | opp_overlap 1430228 GCATTTAGCTTAAAA CTTTCTTAAAA GTAAA TTTTAGGAAAG TTTTTCTTTTTTCAA CLH_1344 1431903 - 1432631 + | glycine betaine/carnitine/choline transport ATP-binding protein opuCA TERM 1842 1432816 - 1432771 - f 100 -9.9 -4.93595 | opp_overlap 1432771 ATAAAAATGTAAAAA GTCCCCCTATAGGATAGAT AATATAAA AAATATCCTATAGGGGAAC TTTTAGGTACAACAG TERM 1843 1432771 - 1432816 + F 77 -7.7 -4.18018 | opp_overlap 1432771 ATAAAAATGTAAAAA GTCCCCCTATAGGATAGAT AATATAAA AAATATCCTATAGGGGAAC TTTTAGGTACAACAG CLH_1345 1433106 - 1435421 + | ATPase, P-type TERM 1844 1435823 - 1435851 + F 87 -6.7 -5.29385 | ATTTGATTTTCTGTA TCCTCGTTTGGCC TGT GTTAAAACGAGGA TTTTTTGATTGAATT TERM 1845 1436062 - 1436093 + F 100 -7.4 -6.11229 | ACAAAATATTCATTG CCTGTTTTCTAAAT ATAA ATTTAGTTAACAGG TTTTTTTATTTTAAT mgtA 1436167 - 1438866 + | magnesium-translocating P-type ATPase TERM 1846 1438885 - 1438924 + F 86 -4.4 -5.82388 | overlap 1438887 ATAAATAACATGTAT CGCCCTATAGATAAAC AAGAGAAA GTTTACCTATAGGGTA TTTTTTTTGAAGTTT TERM 1847 1438887 - 1438922 + F 93 -9.2 -4.53853 | overlap 1438885 AAATAACATGTATCG CCCTATAGATAAAC AAGAGAAA GTTTACCTATAGGG TATTTTTTTTGAAGT TERM 1848 1439624 - 1439608 - g 76 -3.8 -5.40625 | ATAGTACATAAAAAA TCTAAT GAAAA ATTAGA ATGGATGAAGGGATT CLH_1347 1439347 - 1440195 + | Zn-dependent hydrolase CLH_1348 1440270 - 1440878 + | methyltransferase TERM 1849 1440882 - 1440928 + F 100 -10.6 -5.22312 | gap 1, opp_overlap 1440882 1440880 GCATATATATAAAGA CTTCTTCTTAGTAATGAGTTG TAATAT CAATT-ATTGCTAAGAAGAAG TTTTTTAGTATACAT TERM 1850 1440950 - 1440970 + F 76 -2.7 -5.84381 | opp_overlap 1440950 AGTATACATAAAATT TAATTACAT CCT ATTTAATTA TTTTTTTATTACTGG CLH_1349 1441434 - 1442762 + | xanthine permease TERM 1851 1442794 - 1442822 + F 76 -2.4 -5.8901 | TTGATTTTGATATAA GTTTGGTTGAAT TTTTT ATTCTTCCAAGC TTTTTTATTTTATAT TERM 1852 1443176 - 1443154 - g 72 -6.4 -4.29621 | overlap 1443149 GACAAAGAAAGTAAA TTTCCAACTG AGG CAATTGAAAA ATTAGCTAAAATGGG TERM 1853 1443988 - 1443969 - g 71 -4.4 -4.94058 | gap 1 TGAACTTAAAGAAAA CCAT-GAAT CAT ATTCTATGG AAGCTGCTATGGCTA CLH_1350 1443046 - 1444956 + | acyl-coA dehydrogenase TERM 1854 1445431 - 1445419 - g 73 -9.1 -2.66787 | GTAACATTTATAGCA GCACC AAT GGTGC ATTGGCCAGAAGCAA fprA 1444993 - 1446192 + | flavodoxin TERM 1855 1446273 - 1446319 + F 100 -11.3 -3.99275 | opp_overlap 1446274 1446281 1446288, overlap 1446274 1446281 1446288 AGTATACTTTATATG ACTTATAATAAAAAACACACT TGAAT AGTGTGTTTTTTATTATAAAA TTTAATATTATATAA TERM 1856 1446318 - 1446274 - f 100 -17 -2.64243 | opp_overlap 1446273 1446274 1446281 1446288, overlap 1446281 1446288 GTATACTTTATATGA CTTATAATAAAAAACACACT TGAAT AGTGTGTTTTTTATTATAAA ATTTAATATTATATA TERM 1857 1446274 - 1446318 + F 100 -14.8 -2.98842 | opp_overlap 1446274 1446281 1446288, overlap 1446273 1446281 1446288 GTATACTTTATATGA CTTATAATAAAAAACACACT TGAAT AGTGTGTTTTTTATTATAAA ATTTAATATTATATA TERM 1858 1446311 - 1446281 - f 95 -12.9 -3.38768 | opp_overlap 1446274 1446273 1446281 1446288, overlap 1446274 1446288 TTATATGACTTATAA TAAAAAACACACT TGAAT AGTGTGTTTTTTA TTATAAAATTTAATA TERM 1859 1446281 - 1446311 + F 95 -12.9 -3.40382 | opp_overlap 1446281 1446274 1446288, overlap 1446274 1446273 1446288 TTATATGACTTATAA TAAAAAACACACT TGAAT AGTGTGTTTTTTA TTATAAAATTTAATA TERM 1860 1446288 - 1446304 + F 88 -6.6 -5.55769 | opp_overlap 1446281 1446274 1446288, overlap 1446281 1446274 1446273 ACTTATAATAAAAAA CACACT TGAAT AGTGTG TTTTTTATTATAAAA TERM 1861 1446304 - 1446288 - f 88 -6.6 -5.56673 | opp_overlap 1446288 1446281 1446274 1446273, overlap 1446281 1446274 ACTTATAATAAAAAA CACACT TGAAT AGTGTG TTTTTTATTATAAAA CLH_1352 1446512 - 1447081 + | hypothetical protein CLH_1353 1447059 - 1447508 + | hypothetical protein CLH_1354 1447511 - 1448137 + | accessory gene regulator B superfamily CLH_1355 1448173 - 1448298 + | putative autoinducer prepeptide TERM 1862 1448332 - 1448305 - f 100 -13 -3.91042 | opp_overlap 1448305 1448308 1448325, overlap 1448308 GAGAAATAATTTAAA TAATGAGATCAA TATA TTGATCTCATTA TAATTATCATGAGGT TERM 1863 1448305 - 1448332 + F 91 -13 -2.86449 | opp_overlap 1448305 1448308, overlap 1448308 1448325 GAGAAATAATTTAAA TAATGAGATCAA TATA TTGATCTCATTA TAATTATCATGAGGT TERM 1864 1448308 - 1448329 + F 91 -10.3 -3.57783 | opp_overlap 1448305 1448308, overlap 1448305 1448325 AAATAATTTAAATAA TGAGATCAA TATA TTGATCTCA TTATAATTATCATGA TERM 1865 1448329 - 1448308 - f 95 -10.3 -4.05677 | opp_overlap 1448308 1448305 1448325, overlap 1448305 AAATAATTTAAATAA TGAGATCAA TATA TTGATCTCA TTATAATTATCATGA TERM 1866 1448965 - 1448982 + G 75 -8.5 -3.39895 | opp_overlap 1448965 TACTGAATTATATAA TCACAGA TATT TCTGTGA TTCATTAGTAGAGAA TERM 1867 1448982 - 1448965 - g 76 -8.5 -3.60661 | opp_overlap 1448965 TACTGAATTATATAA TCACAGA TATT TCTGTGA TTCATTAGTAGAGAA CLH_1356 1448354 - 1450063 + | ggdef/hd domain protein TERM 1868 1450128 - 1450174 + F 100 -15.6 -3.02626 | opp_overlap 1450136, overlap 1450130 1450136 AAATAGTGATTTGTT TATAAAAAGGACTGTATCAA ATTTATA TTGATACAGTCCTTTATATA TATATATCAATATTA TERM 1869 1450130 - 1450172 + F 100 -13.8 -3.06261 | opp_overlap 1450136, overlap 1450128 1450136 ATAGTGATTTGTTTA TAAAAAGGACTGTATCAA ATTTATA TTGATACAGTCCTTTATA TATATATATCAATAT TERM 1870 1450136 - 1450166 + F 100 -12.8 -4.20086 | opp_overlap 1450136, overlap 1450130 1450128 ATTTGTTTATAAAAA GGACTGTATCAA ATTTATA TTGATACAGTCC TTTATATATATATAT TERM 1871 1450166 - 1450136 - f 100 -12.8 -4.83169 | opp_overlap 1450136 1450130 1450128 ATTTGTTTATAAAAA GGACTGTATCAA ATTTATA TTGATACAGTCC TTTATATATATATAT TERM 1872 1451251 - 1451241 - g 80 -4 -5.68039 | opp_overlap 1451243, overlap 1451233 1451243 AAATCCAGAAAAAAA CTTT CCT AAAG GAATTCTTGTTTCAG TERM 1873 1451623 - 1451639 + G 72 -5.9 -4.4648 | AATGCTATGTGGATT CAAGCTA TTA TAGTTTG TTTTATGATAGCACT CLH_1357 1450501 - 1451997 + | amino acid permease family protein TERM 1874 1452065 - 1452097 + T 75 -5.7 -4.98255 | ATATAAACTATAAAA TCCGCGGTAATGT TTTGATT ATATTATCGTGGA TTTTTATAGTTAAAC CLH_1358 1452547 - 1452119 - | hypothetical protein CLH_1359 1453046 - 1452672 - | transcriptional regulator, MerR family TERM 1875 1454057 - 1454043 - g 81 -7.2 -4.66609 | overlap 1454052 CATTTGACTTAAAAA CTAAAG AAT CTTTAG TAAAAGGTGCTAGTG TERM 1876 1454155 - 1454123 - g 78 -5.8 -4.93177 | gap 1, opp_overlap 1454147, overlap 1454147 CAAAAAGCAAGAAAA GATAGCAG-TATTAT AGCA ATAACAGCTGCTACC CCAGCTTCAGTAGGA CLH_1360 1453232 - 1454992 + | putative 1-deoxy-D-xylulose-5-phosphate synthase CLH_1361 1455115 - 1455996 + | HAD-superfamily hydrolase, subfamily IIB TERM 1877 1456007 - 1456039 + F 77 -6.4 -4.6955 | overlap 1456008 AATAAACTTGATTTA GGGTCTGTATCAAA ATTAA TTTGATGCAGATCA TTTTATATATTGATA TERM 1878 1456008 - 1456038 + F 87 -9.9 -3.40645 | overlap 1456007 ATAAACTTGATTTAG GGTCTGTATCAAA ATTAA TTTGATGCAGATC ATTTTATATATTGAT CLH_1362 1456304 - 1456768 + | hypothetical protein TERM 1879 1456784 - 1456805 + F 87 -5.9 -5.70829 | opp_overlap 1456776 ATAAACATAAAAAAA GTCTCTTTT CTGT AAAGGGGAC TTTTTTTGTCGTCTT CLH_1363 1457063 - 1458775 + | hypothetical sigma-54-dependent transcriptional regulator YgeV TERM 1880 1458795 - 1458810 + F 100 -7.6 -5.83211 | opp_overlap 1458795 ACGTTTAAATACAAA CTAGGA TTTA TCCTAG TTTTTTATTTTAATA TERM 1881 1458810 - 1458795 - f 78 -7.6 -4.33258 | opp_overlap 1458795 ACGTTTAAATACAAA CTAGGA TTTA TCCTAG TTTTTTATTTTAATA TERM 1882 1458890 - 1458873 - f 80 -3.5 -5.83822 | opp_overlap 1458845 1458873, overlap 1458845 1458844 TACATGTAAAAAAAA TAGACAT ATCT ATATCTA ACTTAAGGATTACTT CLH_1364 1459101 - 1460462 + | short-chain fatty acids transporter CLH_1365 1460494 - 1461423 + | 3-hydroxybutyryl-coa dehydrogenase CLH_1366 1461484 - 1463037 + | propionate CoA-transferase TERM 1883 1463112 - 1463067 - f 72 -7.7 -3.62859 | gap 1, opp_overlap 1463068, overlap 1463068 ACCATAATGTGTAAA CTGGCC-CCTGTAAGTTAGACC TAA AATCCAACTTACAGGAGGTCAT TTTTTTTATGTTTAT TERM 1884 1463111 - 1463068 - f 85 -11.2 -2.77233 | gap 1, opp_overlap 1463068, overlap 1463067 CCATAATGTGTAAAC TGGCC-CCTGTAAGTTAGACC TAA AATCCAACTTACAGGAGGTCA TTTTTTTTATGTTTA TERM 1885 1463068 - 1463111 + F 100 -9.8 -6.15717 | gap 1, opp_overlap 1463068 1463067 CCATAATGTGTAAAC TGGCC-CCTGTAAGTTAGA CCTAAAA TCCAACTTACAGGAGGTCA TTTTTTTTATGTTTA TERM 1886 1464647 - 1464659 + G 73 -7.7 -3.71527 | AGGTGCAGCTGTTTA TGCAC ATA GTGCA TTTGAATGGTTAAAG CLH_1367 1463508 - 1464686 + | thermostable carboxypeptidase 1 TERM 1887 1464741 - 1464774 + F 100 -9.9 -5.22039 | gap 1, opp_overlap 1464741 1464740 1464744 TATTAAATTAAAATG GAACCTATG-AAATAG ACA CTATTTTTATAGGTTC TTTTTTGAGTTTAAA TERM 1888 1465251 - 1465241 - g 70 -5.4 -4.52101 | overlap 1465236 AATAATCAATCAAAA GCAA TTT TTGC AGCAGAAAATAGTAA CLH_1368 1465097 - 1466728 + | beta-hexosaminidase TERM 1889 1466752 - 1466788 + F 82 -5.4 -5.58454 | opp_overlap 1466753, overlap 1466753 AATCAATTAATAAAA ATTAGTTTATATCATT TAATT ATTGATATAAACTAAA TTTTTTTAATATAGA TERM 1890 1466753 - 1466787 + F 81 -8.9 -3.93988 | opp_overlap 1466753, overlap 1466752 ATCAATTAATAAAAA TTAGTTTATATCATT TAATT ATTGATATAAACTAA ATTTTTTTAATATAG TERM 1891 1466787 - 1466753 - f 100 -8.9 -5.20534 | opp_overlap 1466753 1466752 ATCAATTAATAAAAA TTAGTTTATATCATT TAATT ATTGATATAAACTAA ATTTTTTTAATATAG CLH_1369 1467025 - 1468173 + | alcohol dehydrogenase, iron-containing TERM 1892 1468179 - 1468208 + F 95 -10.1 -4.26344 | opp_overlap 1468167 1468179 1468185, overlap 1468185 1468201 AACTAACTAATTTAA TTAAAACCACCTG GGAA CGGGTGGTTTTTA TTTTACTAAAAATCT TERM 1893 1468185 - 1468202 + F 100 -9.1 -5.50723 | opp_overlap 1468179 1468185, overlap 1468179 1468201 CTAATTTAATTAAAA CCACCTG GGAA CGGGTGG TTTTTATTTTACTAA TERM 1894 1468202 - 1468185 - f 75 -6.9 -4.45664 | opp_overlap 1468185 1468179 1468201, overlap 1468179 CTAATTTAATTAAAA CCACCTG GGAA CGGGTGG TTTTTATTTTACTAA TERM 1895 1468370 - 1468349 - f 74 -8.9 -3.11569 | opp_overlap 1468348, overlap 1468348 TTACTTATTGAAAAT CATTTTACA ATTA TGTAAAATG GTATATAAAAAGGCA CLH_1370 1468441 - 1469277 + | transcriptional regulatory protein TERM 1896 1469374 - 1469339 - f 100 -10.7 -4.72986 | opp_overlap 1469339 TAGTTGTATTAAAAA CAAGAATTCTTGTAG TATTAT CTAAAAGAATTCTTG TTTTTAAATTTTATT TERM 1897 1469339 - 1469374 + F 100 -10.7 -4.91084 | opp_overlap 1469339 TAGTTGTATTAAAAA CAAGAATTCTTGTAG TATTAT CTAAAAGAATTCTTG TTTTTAAATTTTATT CLH_1371 1469850 - 1470947 + | membrane spanning protein CLH_1372 1470947 - 1471213 + | hypothetical protein CLH_1373 1471238 - 1471534 + | bacterial microcompartments family protein CLH_1374 1471561 - 1471866 + | propanediol utilization protein PduA CLH_1375 1471942 - 1473432 + | aldehyde-alcohol dehydrogenase 2 CLH_1376 1473488 - 1476028 + | formate C-acetyltransferase TERM 1898 1476140 - 1476102 - f 82 -8.4 -4.4017 | gap 1, opp_overlap 1476113 GTAATTTTTATAAAA CTTG-TCACTAACATGA GTTAAA TCATGTTAGTGTGCAAG AAACATTTAAAACAT TERM 1899 1476266 - 1476256 - g 71 -4 -5.10064 | TTTAATATACAAAAA TACA ATA TGTA TGATGGACCAGGAAT CLH_1377 1476196 - 1477149 + | glycyl-radical enzyme activating family protein CLH_1378 1477189 - 1477542 + | ethanolamine utilization protein EutS homolog CLH_1379 1477539 - 1477979 + | GTP-binding protein, EutP/PduV family CLH_1380 1477997 - 1478665 + | hypothetical protein CLH_1381 1478647 - 1479492 + | ethanolamine utilization protein EutJ CLH_1382 1479508 - 1479810 + | microcompartments protein CLH_1383 1479807 - 1480070 + | ethanolamine utilization protein EutN/carboxysome structural protein Ccml TERM 1900 1480699 - 1480717 + G 75 -9.6 -2.58249 | overlap 1480698 TTCAGTCATTGATGG TGGACCTA TGA TGGGTCCA GTTATGAAAAATCTA CLH_1384 1480088 - 1481416 + | respiratory-chain NADH dehydrogenase domain, 51 kda subunit CLH_1385 1481418 - 1481966 + | microcompartments protein TERM 1901 1482571 - 1482587 + G 75 -7.3 -4.07877 | GTAAGACATTTACTG CATATCC AGG GGATGTG TTATTTGTACCATCA CLH_1386 1482024 - 1482686 + | transcriptional regulator TERM 1902 1483111 - 1483097 - g 81 -7.2 -4.76802 | opp_overlap 1483096 1483097 1483109, overlap 1483102 1483106 1483109 CTGAAAAAGAAGAAA CAATAG AAA CTATTG ATTGTATAATCAATG CLH_1387 1482709 - 1483467 + | bacterial microcompartments family protein TERM 1903 1483558 - 1483545 - g 70 -6.7 -3.9644 | opp_overlap 1483545 TGTTCAATACAAGAA GCAAG AAAC CTTGC TCGCTTAGGAAAAGT TERM 1904 1484098 - 1484079 - g 88 -9.4 -4.09455 | opp_overlap 1484071, overlap 1484071 ATGAAGAGCAAAGAA GTTGCTAT AATA ATAGCAAC AGGCGGTCCAGGAAT CLH_1388 1483506 - 1485065 + | acetaldehyde dehydrogenase (acetylating) CLH_1389 1485066 - 1485716 + | propanediol utilization protein TERM 1905 1485960 - 1485938 - g 77 -7.6 -4.12188 | GTAGGAGCTGTAAAA GCTGCTACTG ATG CAGGAGCTGC TGCTGCACAACGTGT CLH_1390 1485773 - 1486063 + | bacterial microcompartments family protein TERM 1906 1486113 - 1486134 + F 100 -9.5 -4.9725 | opp_overlap 1486113 1486114, overlap 1486114 GCCTTAAGTATGAAA TCCACGATA GAAA TATCGTGGG TTTTTATATGCAGAT TERM 1907 1486134 - 1486113 - f 71 -7.3 -3.84246 | opp_overlap 1486113 1486114, overlap 1486114 GCCTTAAGTATGAAA TCCACGATA GAAA TATCGTGGG TTTTTATATGCAGAT TERM 1908 1486133 - 1486114 - f 82 -10.8 -2.90227 | opp_overlap 1486113 1486114, overlap 1486113 CCTTAAGTATGAAAT CCACGATA GAAA TATCGTGG GTTTTTATATGCAGA TERM 1909 1486114 - 1486133 + F 91 -10.8 -3.57627 | opp_overlap 1486114 1486113, overlap 1486113 CCTTAAGTATGAAAT CCACGATA GAAA TATCGTGG GTTTTTATATGCAGA CLH_1391 1486449 - 1486838 + | iron-binding protein, hemerythrin TERM 1910 1487148 - 1487182 + F 100 -8.9 -6.28401 | gap 1, opp_overlap 1487148 ATAGAGTATATGAAA TACTAGTAT-TGGTTT ACCT AAACCATATGCTAGTA TTTTTTTGTTTTTTA CLH_1392 1487340 - 1488734 + | inner membrane protein YicO TERM 1911 1489653 - 1489673 + G 70 -6.9 -3.92143 | opp_overlap 1489652 1489657, overlap 1489643 CCAAGTCTTATAGAG CAGATTCTA CAG TAGAAACTG TTTATGAAGATTTTG CLH_1393 1489151 - 1490176 + | putative iron chelate uptake ABC transporter, solute-binding protein TERM 1912 1490223 - 1490204 - g 87 -5 -5.84432 | opp_overlap 1490205, overlap 1490205 TAGAAGATAAAAAAA GCCTTTCT AAAA AGAAAGGT TTTTTATATTGGGCT TERM 1913 1490222 - 1490205 - g 81 -8.5 -4.08219 | opp_overlap 1490205, overlap 1490204 AGAAGATAAAAAAAG CCTTTCT AAAA AGAAAGG TTTTTTATATTGGGC TERM 1914 1490205 - 1490222 + G 100 -8.5 -5.47159 | opp_overlap 1490204 1490205 AGAAGATAAAAAAAG CCTTTCT AAAA AGAAAGG TTTTTTATATTGGGC CLH_1394 1490176 - 1491258 + | Fe uptake system integral membrane protein CLH_1395 1491258 - 1492094 + | iron chelate uptake ABC transporter, FeCT family, ATP-binding protein CLH_1396 1492184 - 1492330 + | hypothetical protein TERM 1915 1492341 - 1492399 + T 81 -7.9 -4.41895 | gap 1, opp_overlap 1492350 1492356, overlap 1492350 1492356 TGTAAAAGAATATAG TTTTAT-AAATATAAATACCGTGCTTAA ATTT TTAAGCACGGTATTTATATTTCGTTCTA TTTTAATTAAAAGTT TERM 1916 1492350 - 1492389 + T 100 -21.2 -4.13911 | opp_overlap 1492350 1492356, overlap 1492341 1492356 ATATAGTTTTATAAA TATAAATACCGTGCTTAA ATTT TTAAGCACGGTATTTATA TTTCGTTCTATTTTA TERM 1917 1492389 - 1492350 - T 100 -21.2 -3.89055 | opp_overlap 1492350 1492341 1492356, overlap 1492356 ATATAGTTTTATAAA TATAAATACCGTGCTTAA ATTT TTAAGCACGGTATTTATA TTTCGTTCTATTTTA TERM 1918 1492356 - 1492383 + T 100 -15.8 -4.41087 | opp_overlap 1492350 1492356, overlap 1492350 1492341 TTTTATAAATATAAA TACCGTGCTTAA ATTT TTAAGCACGGTA TTTATATTTCGTTCT TERM 1919 1492383 - 1492356 - T 100 -15.8 -4.40003 | opp_overlap 1492356 1492350 1492341, overlap 1492350 TTTTATAAATATAAA TACCGTGCTTAA ATTT TTAAGCACGGTA TTTATATTTCGTTCT CLH_1397 1493519 - 1492416 - | cold-shock deAd box protein a TERM 1920 1493448 - 1493463 + g 74 -4 -5.35815 | TTCTTGAATTGCAGT TGGAGT TTTA ATTCCA TTTTTATTTAGTATG TERM 1921 1493664 - 1493636 - H 70 -7.5 -3.45911 | overlap 1493635 TTTAAATAAATAAAG GCTTGGTATTTTT TAA AAAACAACCAAGC TCTACAAAATAATCA CLH_1398 1494141 - 1494293 + | hypothetical protein TERM 1922 1494314 - 1494335 + F 100 -8.1 -5.94214 | opp_overlap 1494314 AATTGTTATAAATAA GACTATAGT TTAG GCTATAGTC TTTTTTTATTATATT TERM 1923 1494335 - 1494314 - f 73 -7.4 -4.07535 | opp_overlap 1494314 AATTGTTATAAATAA GACTATAG TTTAGG CTATAGTC TTTTTTTATTATATT TERM 1924 1494501 - 1494491 - g 82 -2.6 -5.97575 | AATTCAGAAAAAAAA TTAA AAC TTAA AGAAAATAAAGCATA CLH_1399 1494431 - 1494583 + | hypothetical protein TERM 1925 1494601 - 1494560 - T 95 -10.3 -4.36596 | opp_overlap 1494562 TGTATAAGCAAGAAA GAGCCAGTAGTAAAATCTT ATTA AAGACTAAACTACTAGCTC TTAGAATTTATTTTA CLH_1400 1498316 - 1494609 - | collagenase TERM 1926 1494778 - 1494792 + g 70 -8.6 -2.72881 | overlap 1494777 AGTTGCCATGCTACA CCTAAG TTG CTTAGG CTATTTAATTCAATA TERM 1927 1498479 - 1498495 + H 82 -2.3 -6.32976 | TTCCTACTGATATTT TTGCTAA TCA TTAGGAA TTTTTTTATTTTTTT TERM 1928 1499633 - 1499646 + G 71 -3.9 -5.18371 | opp_overlap 1499628, overlap 1499625 GTGCAGACAATAGTT TAACT ACTG AGTTA TTTTGTTTTATACCA TERM 1929 1499750 - 1499738 - g 75 -3.5 -5.41359 | AAGGAAATGAAAAAA TTAAA TTG TTTAA AGAACAGCTTATGTC CLH_1401 1498774 - 1499961 + | hypothetical protein TERM 1930 1499985 - 1499942 - T 74 -8.5 -3.36968 | opp_overlap 1499940 1499937 1499943 1499954, overlap 1499943 CATTTAATGTTAGAA GTGATTATAGAGTTTCTTA AGCAAG TAAGAAATTCTATAATCAT AATATTCATTAAAAA TERM 1931 1499984 - 1499943 - T 88 -12 -2.6186 | opp_overlap 1499943 1499940 1499937 1499954, overlap 1499942 ATTTAATGTTAGAAG TGATTATAGAGTTTCTTA AGCAAG TAAGAAATTCTATAATCA TAATATTCATTAAAA TERM 1932 1499943 - 1499984 + T 100 -14.2 -2.80699 | opp_overlap 1499942 1499943, overlap 1499940 1499937 1499954 ATTTAATGTTAGAAG TGATTATAGAGTTTCTTA AGCAAG TAAGAAATTCTATAATCA TAATATTCATTAAAA CLH_1402 1501092 - 1500073 - | acyltransferase family protein CLH_1403 1501315 - 1502538 + | methyltransferase TERM 1933 1502565 - 1502605 + F 90 -7.9 -4.93365 | opp_overlap 1502565 1502568 TTACATAATAATCTA TAAGTCTATAAGCAT TCAATCAATTT ATGCTTATAGGCTTA TTTTTAGTTATAGAA TERM 1934 1503777 - 1503791 + G 73 -4.3 -5.0133 | TTTGTTTGGTTACTT CAAGT TTAAT ACTTG TTTTTTCAAAAAATA TERM 1935 1503870 - 1503881 + G 70 -2.2 -5.47431 | GAGTTCAATATATAT CAGT TGTA GCTG TTTTTTATGTATTAA TERM 1936 1503897 - 1503907 + G 70 -5.4 -4.52142 | opp_overlap 1503897, overlap 1503891 TTTTTTATGTATTAA TAGG ATT CCTA TTTATGTTTTATGGT CLH_1404 1502798 - 1504114 + | mate efflux family protein TERM 1937 1504416 - 1504375 - f 75 -7.5 -3.93782 | opp_overlap 1504375, overlap 1504361 GTATTTAAGATTAAA TAGATGTCTCATATTGAAT TTTT ATGCATTATGAGATATCTA TTTTCTGTTTTATAA TERM 1938 1504375 - 1504416 + F 100 -9.7 -4.94487 | opp_overlap 1504361 1504375 GTATTTAAGATTAAA TAGATGTCTCATATTGAAT TTTT ATGCATTATGAGATATCTA TTTTCTGTTTTATAA CLH_1405 1504629 - 1505465 + | hypothetical protein TERM 1939 1505606 - 1505638 + F 76 -4.3 -5.38549 | ATATAAAAATAGTAA GCATAGAATTGTC GGAGTTA GATGATTTTATGC TTTTTATTCTTTCGG TERM 1940 1505965 - 1505949 - g 70 -2.2 -5.49809 | overlap 1505950 GAAATTGTAAAAAAA GCACAG GAAAT CTGTGT AGAAGAGGGTGCAGC CLH_1406 1505772 - 1506062 + | hypothetical protein TERM 1941 1506150 - 1506128 - f 93 -7.8 -5.18995 | opp_overlap 1506128 AATACAAGATAAAAA TGCATACTTT AAC AAGGTATGCA TTTTTATTATAAATC TERM 1942 1506128 - 1506150 + F 100 -10 -5.20333 | opp_overlap 1506128 AATACAAGATAAAAA TGCATACTTT AAC AAGGTATGCA TTTTTATTATAAATC CLH_1407 1506250 - 1508607 + | diguanylate cyclase/phosphodiesterase domain 2 TERM 1943 1508737 - 1508785 + T 100 -17.1 -5.48787 | opp_overlap 1508737, overlap 1508739 AATTAAAATTACGAA TGCGGGCTACATCTTAAGAATAT TTA ATATTTTTAAGATGTAGCCCAAA TTTTTTATATATTAT TERM 1944 1508785 - 1508737 - T 100 -17.1 -3.39207 | opp_overlap 1508737 1508739 AATTAAAATTACGAA TGCGGGCTACATCTTAAGAATAT TTA ATATTTTTAAGATGTAGCCCAAA TTTTTTATATATTAT TERM 1945 1508739 - 1508783 + T 100 -19.7 -2.90472 | opp_overlap 1508737, overlap 1508737 TTAAAATTACGAATG CGGGCTACATCTTAAGAATAT TTA ATATTTTTAAGATGTAGCCCA AATTTTTTATATATT CLH_1408 1509018 - 1508836 - | hypothetical protein TERM 1946 1509397 - 1509420 + G 77 -5.4 -5.03314 | overlap 1509399 CTTGCAGCACCAATA TTCTTTTACT TAAT AGTAGAAGGA TTTTTTAAGACTAAG CLH_1409 1509259 - 1509966 + | putative F pilin acetylation protein TERM 1947 1510075 - 1510109 + F 76 -3 -5.89827 | TTAATACAGATAAGA GAATTCTTTGTTTA ATCATTA TAAGCAAGGGGTTC TTTTTTTTCATAATT CLH_1410 1510267 - 1510569 + | hypothetical protein CLH_1411 1510624 - 1510887 + | hypothetical protein CLH_1412 1510977 - 1511267 + | hypothetical protein CLH_1413 1511316 - 1511897 + | hypothetical protein TERM 1948 1512722 - 1512694 - g 70 -5.5 -4.57912 | opp_overlap 1512695 GAAAGAACAAAAGAA TTAATAGAATTAT TAT ATAATCCAATTAA TGAGGATTCAAATAA CLH_1414 1512034 - 1513380 + | glycosyl hydrolase, family 4 TERM 1949 1513554 - 1513583 + F 76 -4.5 -5.4251 | opp_overlap 1513554 1513564, overlap 1513547 ATTGACAATGGAAAA CTATTCAGAAT AAAAAAAC ATTTTGAATAG TTTTTTATGTGTGAA CLH_1415 1513699 - 1516440 + | NtrC family Transcriptional regulator, ATPase domain TERM 1950 1516512 - 1516533 + F 90 -7.4 -5.4477 | opp_overlap 1516512 TGTAAAAATGAGAAA GTGTGTAA TTGATT TTACACAC TTTTTTTGAGAGTTT TERM 1951 1516533 - 1516512 - f 75 -7.4 -4.2687 | opp_overlap 1516512 TGTAAAAATGAGAAA GTGTGTAA TTGATT TTACACAC TTTTTTTGAGAGTTT CLH_1416 1516727 - 1517038 + | PTS system, lactose/cellobiose-specific family, IIB component CLH_1417 1517061 - 1517375 + | PTS system, lactose/cellobiose-specific family, IIA component CLH_1418 1517457 - 1518191 + | ATPase family protein TERM 1952 1519092 - 1519082 - g 74 -2.6 -5.56573 | opp_overlap 1519082 ATAAATAAAGAAAAA TTAA TAA TTAA TATTGAATTTGATGA CLH_1419 1518332 - 1519441 + | outer surface protein CLH_1420 1519488 - 1520756 + | PTS system, lactose/cellobiose family IIC component TERM 1953 1520855 - 1520887 + F 84 -4.8 -5.73672 | opp_overlap 1520858, overlap 1520856 1520858 ATAATTTATTTACAA AAAGCACCACAGAA TGTTT TTCTGAGGTGCTAA TTTTTTTGATTATTT TERM 1954 1520856 - 1520886 + F 78 -8.3 -4.00543 | opp_overlap 1520858, overlap 1520855 1520858 TAATTTATTTACAAA AAGCACCACAGAA TGTTT TTCTGAGGTGCTA ATTTTTTTGATTATT TERM 1955 1520858 - 1520884 + F 95 -10.9 -3.55657 | opp_overlap 1520858, overlap 1520856 1520855 ATTTATTTACAAAAA GCACCACAGAA TGTTT TTCTGAGGTGC TAATTTTTTTGATTA TERM 1956 1520884 - 1520858 - f 100 -10.9 -4.88067 | opp_overlap 1520858 1520856 1520855 ATTTATTTACAAAAA GCACCACAGAA TGTTT TTCTGAGGTGC TAATTTTTTTGATTA CLH_1421 1521147 - 1521953 + | membrane protein CLH_1422 1522017 - 1522664 + | two-component response regulator CLH_1423 1522654 - 1524027 + | sensor histidine kinase CLH_1424 1524063 - 1526369 + | putative lipoprotein TERM 1957 1526411 - 1526455 + F 100 -18.3 -4.15249 | opp_overlap 1526416 AATATTATTATTTTA GAGGAGGTATTTATGTTTAAT TTT ATTAAGCATAAATAACTCCTC TTTACTTTAGTGTTT TERM 1958 1526703 - 1526734 + F 100 -11 -6.01369 | opp_overlap 1526703 CAACAGGATATTTAA TACCTGTGGGACAG TATA TTGTTCTACAGGTA TTTTTTTATTCTTTA TERM 1959 1526825 - 1526807 - f 77 -4.7 -5.33405 | overlap 1526817 GCTATCAAACAAAAA TTCTTAA GTATT TTAAGAA TAAAATGGAGGTAAC TERM 1960 1527683 - 1527697 + G 72 -7.2 -4.06182 | overlap 1527682 TTCCAGAAGAATTTC CTGTTA TTT TAACAG TGTTTTTATCAATGG TERM 1961 1529171 - 1529149 - g 87 -9.4 -4.07124 | opp_overlap 1529145 GACTATGTATATAAA TCATTTAATA ATA TATTAAATGA TAAAGTTATGCTAGT CLH_1425 1526845 - 1529370 + | ATPase, P-type TERM 1962 1529472 - 1529514 + F 81 -8 -4.42081 | gap 1, opp_overlap 1529471 1529472 1529483, overlap 1529464 CAATAAACTAAAAGG GAACCTG-TAAAGTGGACT ATAAAA AGTACACTTTAGTAGGTTC TTTTCAGTTTATATT CLH_1426 1529638 - 1530090 + | spermine/spermidine acetyltransferase CLH_1427 1531724 - 1530387 - | mate efflux family protein TERM 1963 1531798 - 1531750 - R 95 -7 -5.95539 | gap 1, opp_overlap 1531750 CTCCAAATAAAAAAA CATTCGAATTTTCATACCTTCAA TGGC CTAATGGTATGAAA-TACGAATG TTTGTAAAAGCATTT TERM 1964 1532014 - 1531973 - R 82 -8.2 -4.54477 | overlap 1531968 1531975 1531977 TGAAAATTTAGAAAA GAGATTTTTCACGAGATA TTAGAT TATCCCGTGAAAAAGCTT AAACTTAGTAAATAT TERM 1965 1532012 - 1531975 - R 95 -10.8 -3.86814 | overlap 1531968 1531973 1531977 AAAATTTAGAAAAGA GATTTTTCACGAGATA TTAGAT TATCCCGTGAAAAAGC TTAAACTTAGTAAAT TERM 1966 1532010 - 1531977 - R 95 -12 -3.49789 | overlap 1531968 1531975 1531973 AATTTAGAAAAGAGA TTTTTCACGAGATA TTAGAT TATCCCGTGAAAAA GCTTAAACTTAGTAA CLH_1428 1532234 - 1532088 - | hypothetical protein TERM 1967 1532522 - 1532470 - H 90 -11.1 -3.1634 | gap 1, opp_overlap 1532470, overlap 1532484 TGGTAAAGCAGGCAA GACCGAAATAAAAATGCATTTCTT TTAATT AAGAAATACATT-TTATTTTGGTC TTTTTTTATTTTTTA TERM 1968 1532470 - 1532522 + H 100 -11.1 -6.28401 | gap 1, opp_overlap 1532470 1532484 TGGTAAAGCAGGCAA GACCGAAATAAAAATGCATTTCTT TTAATT AAGAAATACATTTT-ATTTTGGTC TTTTTTTATTTTTTA TERM 1969 1532509 - 1532484 - H 81 -5.6 -5.31519 | opp_overlap 1532470, overlap 1532470 AGACCGAAATAAAAA TGCATTTCTT TTAATT AAGAAATACA TTTTATTTTGGTCTT TERM 1970 1533008 - 1533020 + G 75 -3.3 -5.38054 | overlap 1533007 TATTTTAAATACTAT TGCAG ATG CAGCA TTTTTCTTTATGCCA CLH_1429 1532556 - 1534436 + | PTS system, beta-glucoside-specific IIABC component TERM 1971 1534457 - 1534485 + F 100 -11.9 -4.19506 | opp_overlap 1534457 ATTAATATAAAAAAA TCAGACTTTGAAA AAA TATCAAAGTCTGA TTTTACACTTAAAAT TERM 1972 1534485 - 1534457 - f 100 -11.9 -5.82172 | opp_overlap 1534457 ATTAATATAAAAAAA TCAGACTTTGAAA AAA TATCAAAGTCTGA TTTTACACTTAAAAT CLH_1430 1534525 - 1535937 + | beta-glucosidase CLH_1431 1535977 - 1536810 + | transcription antiterminator LicT TERM 1973 1536918 - 1536952 + F 77 -3.1 -5.77571 | gap 1, opp_overlap 1536927, overlap 1536927 TTAATAATATTAAAA GTGAATGTATGAATAT ATAA GTAT-CATATGTTCAC TTTTTGTTTTTTAAT CLH_1432 1537291 - 1537488 + | hypothetical protein CLH_1433 1537659 - 1538306 + | nitrite reductase TERM 1974 1538433 - 1538477 + F 88 -8.2 -4.82901 | overlap 1538434 ATATATAAATAGTTT ATCCCTAATAATATATTTAG TTTAC TTCAATATATTATTAGGGAG TTTTTATGCCCAAAA TERM 1975 1538434 - 1538476 + F 95 -11.7 -3.49419 | overlap 1538433 TATATAAATAGTTTA TCCCTAATAATATATTTAG TTTAC TTCAATATATTATTAGGGA GTTTTTATGCCCAAA CLH_1434 1538597 - 1538842 + | RNA polymerase sigma-70 factor, ECF subfamily CLH_1435 1538823 - 1539785 + | hypothetical protein TERM 1976 1539807 - 1539836 + F 83 -6.7 -5.12474 | opp_overlap 1539807 ATATGAATTTAAAAA GATTAAATTTTAT ATGC GTAAGATTTAATC TTTTTATATATTGTC TERM 1977 1539984 - 1539961 - f 76 -8.4 -3.69506 | opp_overlap 1539939 1539965 1539965, overlap 1539937 1539959 TATTGTAAAATAATA TCAATATATA GAGA TATATATTGA GTAAAATTATAAAAA CLH_1436 1540046 - 1540867 + | putative methyl-accepting chemotaxis protein TERM 1978 1540880 - 1540926 + F 100 -17 -4.92791 | opp_overlap 1540885, overlap 1540885 TAATTTTATATAGGT AAAAACACCTTATATAGTTCCT TTC AGGAATTATATAGGGTGTTTTC TTTTCTTATGTTCTA TERM 1979 1540921 - 1540885 - f 100 -12.5 -4.72846 | opp_overlap 1540885 1540880 TTATATAGGTAAAAA CACCTTATATAGTTCCT TTC AGGAATTATATAGGGTG TTTTCTTTTCTTATG TERM 1980 1540885 - 1540921 + F 100 -16.9 -5.31091 | opp_overlap 1540885, overlap 1540880 TTATATAGGTAAAAA CACCTTATATAGTTCCT TTC AGGAATTATATAGGGTG TTTTCTTTTCTTATG TERM 1981 1541603 - 1541617 + G 71 -7.2 -3.78775 | overlap 1541590 GTTATTGGGATTTCA CCTAAT ATA ATTAGG TTTCCTGGTGGAAGC CLH_1437 1541171 - 1541941 + | polysaccharide deacetylase family protein TERM 1982 1541933 - 1541991 + T 100 -14.5 -3.83844 | gap 1, opp_overlap 1541935 1541936 1541938 1541942 1541949, overlap 1541936 1541949 TTTAAAATAAGAAAG AATTATTAATAGAAAAGACATGCTCA AAATTAAA TGAGCATGTCTTTTCTATTAA-AATA TTATTGATTAATCCA TERM 1983 1541989 - 1541935 - T 100 -17.1 -4.42118 | gap 1, opp_overlap 1541933 1541936 1541949, overlap 1541936 1541938 1541942 1541949 TAAAATAAGAAAGAA TTATTAATAGAAAAGACATGCTCA AAATTAAA TGAGCATGTCTTTTCTATTAA-AA TATTATTGATTAATC TERM 1984 1541989 - 1541936 - T 100 -18.7 -3.22831 | opp_overlap 1541933 1541936 1541949, overlap 1541935 1541938 1541942 1541949 AAAATAAGAAAGAAT TATTAATAGAAAAGACATGCTCA AAATTAAA TGAGCATGTCTTTTCTATTAAAA TATTATTGATTAATC TERM 1985 1541936 - 1541989 + T 100 -18.7 -3.50119 | opp_overlap 1541935 1541936 1541938 1541942 1541949, overlap 1541933 1541949 AAAATAAGAAAGAAT TATTAATAGAAAAGACATGCTCA AAATTAAA TGAGCATGTCTTTTCTATTAAAA TATTATTGATTAATC TERM 1986 1541987 - 1541938 - T 100 -21.3 -3.13692 | opp_overlap 1541936 1541933 1541949, overlap 1541935 1541936 1541942 1541949 AATAAGAAAGAATTA TTAATAGAAAAGACATGCTCA AAATTAAA TGAGCATGTCTTTTCTATTAA AATATTATTGATTAA TERM 1987 1541983 - 1541942 - T 100 -17.7 -3.35961 | opp_overlap 1541936 1541933 1541949, overlap 1541938 1541935 1541936 1541949 AGAAAGAATTATTAA TAGAAAAGACATGCTCA AAATTAAA TGAGCATGTCTTTTCTA TTAAAATATTATTGA TERM 1988 1541976 - 1541949 - T 100 -10 -4.71186 | opp_overlap 1541936 1541933 1541949, overlap 1541942 1541938 1541935 1541936 ATTATTAATAGAAAA GACATGCTCA AAATTAAA TGAGCATGTC TTTTCTATTAAAATA TERM 1989 1541949 - 1541976 + T 100 -10 -4.67608 | opp_overlap 1541949 1541942 1541938 1541935 1541936, overlap 1541936 1541933 ATTATTAATAGAAAA GACATGCTCA AAATTAAA TGAGCATGTC TTTTCTATTAAAATA CLH_1438 1542303 - 1541992 - | hypothetical protein TERM 1990 1542167 - 1542177 + g 70 -6.8 -4.00934 | ATTAAATGCGCCCAA GCTC CTA GAGC TTTAATATTTCCAGT TERM 1991 1542537 - 1542517 - H 79 -9.1 -3.64822 | opp_overlap 1542503 1542516 1542517, overlap 1542496 1542518 ATCGGTTCAGTGAAA CGGTTAACT AAA AGTTAACCA ATATTTAATTAGATG TERM 1992 1542536 - 1542518 - H 82 -10.4 -2.78679 | opp_overlap 1542503 1542517 1542516, overlap 1542496 1542517 TCGGTTCAGTGAAAC GGTTAACT AAA AGTTAACC AATATTTAATTAGAT rbsK 1542567 - 1543496 + | ribokinase CLH_1440 1543502 - 1543897 + | high affinity ribose transport protein RbsD TERM 1993 1545094 - 1545083 - g 70 -2.2 -5.52079 | AGATTAAAATAAAAA CTCC AAAT AGAG ATCAATTGATAGGTA CLH_1441 1543912 - 1545414 + | ribose import ATP-binding protein RbsA CLH_1442 1545431 - 1546366 + | ribose transport system permease protein RbsC TERM 1994 1546957 - 1546933 - g 71 -7.3 -3.73859 | CAGTATAATAGATAA TGACACTAAAT TTA ACTTAGTATCA AGTCAGGCGGCAGAT CLH_1443 1546391 - 1547293 + | D-ribose-binding protein CLH_1444 1547345 - 1548340 + | transcriptional regulator, LacI family TERM 1995 1548345 - 1548386 + T 100 -11.3 -6.01369 | opp_overlap 1548345 CTGTAAAATAAAAAA TATCCATATTAAAATGA GCAAAAAA TCATTTTGATATGGATA TTTTTTTATTCTTTA TERM 1996 1548386 - 1548345 - T 100 -9.1 -5.79595 | opp_overlap 1548345 CTGTAAAATAAAAAA TATCCATATTAAAATGA GCAAAAAA TCATTTTGATATGGATA TTTTTTTATTCTTTA CLH_1445 1549001 - 1548573 - | hypothetical protein pcp 1549642 - 1549001 - | pyroglutamyl-peptidase I TERM 1997 1549822 - 1549770 - R 71 -7.3 -4.00468 | opp_overlap 1549777, overlap 1549772 1549777 1549811 ATCATAATTTATAAA TAGTTAAGCTTATATATAGAATGCA AAA TACAATCTATATATAAGCTTATAAA CACTTTGTATTAAGA TERM 1998 1549820 - 1549772 - R 89 -9.9 -3.58879 | opp_overlap 1549777, overlap 1549770 1549777 1549811 CATAATTTATAAATA GTTAAGCTTATATATAGAATGCA AAA TACAATCTATATATAAGCTTATA AACACTTTGTATTAA TERM 1999 1549777 - 1549815 + r 95 -12 -3.32562 | opp_overlap 1549777 1549772 1549770 1549811 TTTATAAATAGTTAA GCTTATATATAGAATGCA AAA TACAATCTATATATAAGC TTATAAACACTTTGT TERM 2000 1549815 - 1549777 - R 100 -14.2 -3.26719 | opp_overlap 1549777, overlap 1549772 1549770 1549811 TTTATAAATAGTTAA GCTTATATATAGAATGCA AAA TACAATCTATATATAAGC TTATAAACACTTTGT CLH_1447 1551046 - 1550117 - | permease TERM 2001 1551010 - 1551030 + g 74 -6.3 -4.53602 | opp_overlap 1551010 ACATGATATAAAATA TTTCTAGTA ATA TATTAGAAA TTTGTTTAATATCCA CLH_1448 1551736 - 1551065 - | permease TERM 2002 1551136 - 1551116 - G 70 -7.7 -3.42605 | overlap 1551114 TTTATCTAAAAGATA GTTTTGTAT TAA ACACAAAAC AAATGCGACTATTGC TERM 2003 1552871 - 1552844 - g 70 -5 -4.7458 | AGGAGAAGAAATAAA TATTGCAACTTC TAAG GAAATTTCAATA AAAGATCTTGCAAGT CLH_1449 1552125 - 1553114 + | NAD-dependent epimerase/dehydratase CLH_1450 1553314 - 1554483 + | DegT/DnrJ/EryC1/StrS aminotransferase CLH_1451 1554750 - 1555457 + | N-acylneuraminate cytidylyltransferase CLH_1452 1555450 - 1556592 + | hypothetical protein TERM 2004 1557860 - 1557843 - g 71 -2.7 -5.51353 | TAAAAATAATAAAAA TGCAGAA CTTT TTCTTCA ATATAAGGAGTAATA CLH_1453 1556851 - 1557873 + | hypothetical protein CLH_1454 1558010 - 1558315 + | hypothetical protein CLH_1455 1558523 - 1558855 + | hypothetical protein TERM 2005 1558934 - 1558901 - f 78 -8.3 -3.84304 | opp_overlap 1558906, overlap 1558899 1558902 1558906 TTAACTGATAAAATA TGAGAGATACAGTAT GTTT ATACTGTATCTTTCT GTGAATTTAGGGGGT TERM 2006 1558933 - 1558902 - f 88 -11.8 -2.89859 | opp_overlap 1558906, overlap 1558901 1558899 1558906 TAACTGATAAAATAT GAGAGATACAGTAT GTTT ATACTGTATCTTTC TGTGAATTTAGGGGG TERM 2007 1558906 - 1558929 + F 100 -11.2 -4.11295 | opp_overlap 1558902 1558901 1558899 1558906 TGATAAAATATGAGA GATACAGTAT GTTT ATACTGTATC TTTCTGTGAATTTAG TERM 2008 1558929 - 1558906 - f 87 -11.2 -3.03972 | opp_overlap 1558906, overlap 1558902 1558901 1558899 TGATAAAATATGAGA GATACAGTAT GTTT ATACTGTATC TTTCTGTGAATTTAG CLH_1456 1558954 - 1560678 + | hypothetical protein CLH_1457 1560767 - 1560961 + | hypothetical protein CLH_1458 1560973 - 1561278 + | hypothetical protein CLH_1459 1561297 - 1561605 + | hypothetical protein CLH_1460 1561643 - 1561933 + | hypothetical protein TERM 2009 1561941 - 1561959 + F 90 -5.3 -5.97979 | opp_overlap 1561936 1561941, overlap 1561933 1561931 ATATGTAAAAGAAAA GGAACTG TTTAT CAGTTTC TTTTTTTATTATTAT CLH_1461 1562005 - 1563048 + | nucleotidyl transferase CLH_1462 1563822 - 1563313 - | putative acetyltransferase TERM 2010 1563874 - 1563845 - H 91 -10.3 -3.50853 | opp_overlap 1563845 1563844 1563842, overlap 1563853 1563864 GTCCTCCAATCATAA TCTAATAAGAATA CATA TATTCTCATTAGA ATTATATATTTATCA TERM 2011 1564188 - 1564213 + G 80 -8.5 -4.02535 | ATTGAAAAGGATGGA CTTTCTATTTT AATA AAGATAGAAAG TTTAATTGATTCTGA CLH_1463 1564020 - 1565165 + | UDP-N-acetylglucosamine 2-epimerase CLH_1464 1565155 - 1565829 + | GlcNAc-PI de-N-acetylase family CLH_1465 1565842 - 1566795 + | hypothetical protein CLH_1466 1566834 - 1567838 + | spore coat polysaccharide biosynthesis protein SpsE TERM 2012 1567872 - 1567912 + T 83 -7.7 -4.57073 | TTTGTTTAAATATGT GTTGATATATGCAGTGTCA TGT TGCTTATGCATATATCAAC TTTTTAAAAAACATA TERM 2013 1567983 - 1567962 - T 88 -6.7 -5.47964 | gap 1, opp_overlap 1567963 1567964, overlap 1567963 1567964 ATAAAATAAGAAAAA GTCTTTGGAA ATT TTCCAAAG-C TTTAAGTTGTTTCAT TERM 2014 1567964 - 1567982 + T 82 -10.4 -2.92938 | opp_overlap 1567964 1567962 1567963, overlap 1567963 AAAATAAGAAAAAGT CTTTGGAA ATT TTCCAAAG CTTTAAGTTGTTTCA TERM 2015 1567982 - 1567964 - T 82 -10.4 -2.88631 | opp_overlap 1567963 1567964, overlap 1567962 1567963 AAAATAAGAAAAAGT CTTTGGAA ATT TTCCAAAG CTTTAAGTTGTTTCA CLH_1467 1568440 - 1567985 - | hypothetical protein CLH_1468 1568881 - 1568459 - | hypothetical Membrane Spanning Protein CLH_1469 1569043 - 1569405 + | hypothetical protein CLH_1470 1569689 - 1570375 + | cNMP-binding regulatory protein TERM 2016 1570395 - 1570420 + T 82 -9.9 -3.04792 | gap 1, opp_overlap 1570390 1570388 1570398, overlap 1570398 TTAAGAAATATTGTA GAAGAGGTGGTA AGG TA-CACCTCTTC TATTAAAGATGATAC CLH_1471 1571396 - 1570437 - | putative cation antiporter TERM 2017 1571611 - 1571564 - H 100 -17.4 -5.74288 | opp_overlap 1571564 1571565, overlap 1571565 ATAAATAATAAAAAA TGAGACCCATAGATAACATATT ATTA AATATGCTATCTATGAGTCTCG TTTATTAAGATAATA TERM 2018 1571564 - 1571611 + H 100 -15.2 -4.18934 | opp_overlap 1571564 1571565, overlap 1571565 ATAAATAATAAAAAA TGAGACCCATAGATAACATATT ATTA AATATGCTATCTATGAGTCTCG TTTATTAAGATAATA TERM 2019 1571610 - 1571565 - H 100 -20.9 -4.00912 | opp_overlap 1571565 1571564, overlap 1571564 TAAATAATAAAAAAT GAGACCCATAGATAACATATT ATTA AATATGCTATCTATGAGTCTC GTTTATTAAGATAAT TERM 2020 1571565 - 1571610 + H 100 -16.5 -3.10878 | opp_overlap 1571564 1571565, overlap 1571564 TAAATAATAAAAAAT GAGACCCATAGATAACATATT ATTA AATATGCTATCTATGAGTCTC GTTTATTAAGATAAT CLH_1472 1571986 - 1572852 + | oxygen-independent coproporphyrinogen III oxidase, Fe-S oxidoreductase CLH_1473 1572879 - 1573166 + | antibiotic biosynthesis monooxygenase TERM 2021 1573200 - 1573188 - f 70 -4.9 -4.73388 | opp_overlap 1573171, overlap 1573171 AATTTTCATTAAAAA TTGTA TAA TACAA ACTTAGGTTTAAAAT TERM 2022 1574078 - 1574052 - g 78 -7.4 -4.44667 | opp_overlap 1574038 TGCTTTAATAAGAAA GCTTTTAAAAGA GAC TCTTACAAAAGC AGGTTTTACGAACTT CLH_1474 1573498 - 1574403 + | chemotaxis protein CheV TERM 2023 1574450 - 1574417 - f 85 -6.3 -5.61596 | gap 1, opp_overlap 1574419, overlap 1574419 AGTTTGACAAAAAAA GACAGAAAAGATGATT TAA AAT-ATCTTTTCTGTT TTTTTATGTAGAAAT TERM 2024 1574419 - 1574448 + F 100 -8.9 -5.71712 | gap 1, opp_overlap 1574417 1574419 TTTGACAAAAAAAGA CAGAAAAGATGATT TAA AAT-ATCTTTTCTG TTTTTTTATGTAGAA TERM 2025 1574448 - 1574419 - f 86 -8.9 -4.45201 | gap 1, opp_overlap 1574419, overlap 1574417 TTTGACAAAAAAAGA CAGAAAAGATGATT TAA AAT-ATCTTTTCTG TTTTTTTATGTAGAA CLH_1475 1574734 - 1575909 + | methyltransferase TERM 2026 1575985 - 1576016 + F 100 -8.2 -5.44198 | opp_overlap 1575985 TGTAATTATTAAAAA TAGAAAGTAGACTT TTAG AAGCTTACTTTCTA TTTTTGTTGTTTGTT TERM 2027 1576016 - 1575985 - f 88 -8.2 -4.81083 | opp_overlap 1575985 TGTAATTATTAAAAA TAGAAAGTAGACTT TTAG AAGCTTACTTTCTA TTTTTGTTGTTTGTT CLH_1476 1576108 - 1576650 + | hypothetical protein TERM 2028 1576845 - 1576877 + T 95 -12.3 -3.57263 | opp_overlap 1576845 GTTAATTATTATGAA GTTAATGCTAAATTT AAA AAATTCAGCATTAAC TTTAAAACTAGAAAT TERM 2029 1576877 - 1576845 - T 100 -14.5 -3.25015 | opp_overlap 1576845 GTTAATTATTATGAA GTTAATGCTAAATTT AAA AAATTCAGCATTAAC TTTAAAACTAGAAAT CLH_1477 1577050 - 1576904 - | hypothetical protein CLH_1478 1577995 - 1577144 - | AraC-type DNA-binding domain-containing protein, transcriptional regulator TERM 2030 1577705 - 1577685 - G 89 -9.9 -3.82531 | opp_overlap 1577684 1577683 AAACAAGTCATTAAA TCACAATTA TTA TAATTGTGA GATTCTATAAAATTT TERM 2031 1577904 - 1577915 + g 70 -3 -5.35365 | overlap 1577900 TCATGGTAGTGGAAT TCAA ATTC TTGA TTTTTCTTATCTTTT CLH_1479 1578001 - 1578126 + | hypothetical protein TERM 2032 1578774 - 1578799 + G 70 -6.2 -4.08945 | opp_overlap 1578763 1578760 1578773 AGTATAATAATGTAT TATGCACCAA TTGGGC TTGGAGCATA TTTTGCAAGCATAAT CLH_1480 1578195 - 1579427 + | H+/sodium:glutamate symporter CLH_1481 1579558 - 1580373 + | GTP pyrophosphokinase TERM 2033 1580445 - 1580486 + F 83 -3.9 -5.86976 | opp_overlap 1580439 1580454 TTAAGAATATATTTA GGAAAATACTATGGTTACA TAAA TGTACTAATGGTATTTTTC TTTTTTATTTTCTAG TERM 2034 1580964 - 1580947 - g 71 -2.7 -5.54079 | opp_overlap 1580947 1580963, overlap 1580950 GCAAAAATGAAAAAA CATCTAT AGGT ATAGCTG ATTTACAATCATATG CLH_1482 1580601 - 1581686 + | HD-GYP hydrolase domain containing protein TERM 2035 1582315 - 1582285 - g 80 -9.8 -2.88677 | overlap 1582274 1582277 TATAGAAGCACTAGA TGCTCCAGTATC AGGTGGA GATACTGGAGCT AAAAATGCAACATTA CLH_1483 1581932 - 1582804 + | 2-hydroxy-3-oxopropionate reductase TERM 2036 1582879 - 1582835 - T 77 -8.9 -3.4376 | opp_overlap 1582835, overlap 1582864 ACACATTTATTACAA CTACTTCTTGGAAACATTT TGTTATT AAATCTTTCTAAGAAGTAG TTTTTTATTTAGTTC TERM 2037 1582835 - 1582879 + T 100 -11.1 -5.72053 | opp_overlap 1582835 1582864 ACACATTTATTACAA CTACTTCTTGGAAACATTT TGTTATT AAATCTTTCTAAGAAGTAG TTTTTTATTTAGTTC CLH_1484 1584038 - 1583031 - | cysteine synthase TERM 2038 1583813 - 1583827 + g 71 -7.2 -3.71267 | TACCAGTATTTCCAC TAGTTG TTT CAACTA TTGTGTAGTTTTGTT CLH_1485 1584463 - 1585851 + | hypothetical protein TERM 2039 1585946 - 1585894 - T 70 -5.2 -4.87626 | gap 2, opp_overlap 1585894 1585901 1585908, overlap 1585908 TGCTAATATTAAAAA GATATTATTAATAATACCCCATAGGA AAA TCCTATGGGGTAT--TTAAGTTTATC TTTGTTTTAAACGTG TERM 2040 1585894 - 1585946 + T 79 -7.4 -4.65933 | gap 2, opp_overlap 1585894 1585908, overlap 1585901 1585908 TGCTAATATTAAAAA GATATTATTAATAATACCCCATAGGA AAA TCCTATGGGGTATT-TAAGTT-TATC TTTGTTTTAAACGTG TERM 2041 1585901 - 1585940 + T 100 -11 -4.54608 | gap 1, opp_overlap 1585894 1585908, overlap 1585894 1585908 ATTAAAAAGATATTA TTAATAATACCCCATAGGA AAA TCCTATGGGGTATT-TAAG TTTATCTTTGTTTTA TERM 2042 1585934 - 1585908 - T 100 -18.2 -3.76884 | opp_overlap 1585908 1585901 1585894, overlap 1585894 AGATATTATTAATAA TACCCCATAGGA AAA TCCTATGGGGTA TTTAAGTTTATCTTT TERM 2043 1585908 - 1585934 + T 100 -18.2 -3.93913 | opp_overlap 1585894 1585908, overlap 1585901 1585894 AGATATTATTAATAA TACCCCATAGGA AAA TCCTATGGGGTA TTTAAGTTTATCTTT alr 1587191 - 1586031 - | alanine racemase TERM 2044 1586431 - 1586466 + g 75 -8.6 -3.48236 | gap 1, opp_overlap 1586437 1586440, overlap 1586437 AATTCTTGTACACGT GTTAAA-CTAGCTTTTA GAG TAAGAGCTGGTTTTAAC TTAATATTATCTTTA TERM 2045 1586437 - 1586459 + g 78 -7.8 -4.31688 | opp_overlap 1586437 1586440, overlap 1586431 TGTACACGTGTTAAA CTAGCTTTTA GAG TAAGAGCTGG TTTTAACTTAATATT CLH_1487 1588773 - 1587313 - | GntR-family transcriptional regulator TERM 2046 1588403 - 1588422 + g 72 -3.7 -5.24129 | CTTTCAGGTGCTATG GATTTAA AAGAGA TTAAATC TTTTTTATAAGGAAA CLH_1488 1589044 - 1590426 + | hypothetical protein TERM 2047 1590486 - 1590466 - f 100 -9.8 -5.34309 | opp_overlap 1590466 ACTATTAAACAAAAA CGGATAAC AATAG GTTATCCG TTTTTAGACATTAAG TERM 2048 1590466 - 1590486 + F 100 -9.8 -4.62471 | opp_overlap 1590466 ACTATTAAACAAAAA CGGATAAC AATAG GTTATCCG TTTTTAGACATTAAG CLH_1489 1590560 - 1590847 + | hypothetical protein TERM 2049 1590879 - 1590864 - g 70 -4.8 -4.79953 | AGAACAATAAATAAA TGAAAA AATA TTTTCA ATCAAAAACAGTTAA TERM 2050 1590909 - 1590896 - g 76 -8.1 -3.88464 | TCAAAAACAGTTAAA GCTGC ATTA GCAGC AACAATAGCCATTTT TERM 2051 1591570 - 1591554 - g 76 -6.7 -4.59919 | AAACTATAAAAAGAA TGAAAAA TCA TTTTTCA AAATTCTACATGACA CLH_1490 1590863 - 1591819 + | membrane spanning protein CLH_1491 1591962 - 1592480 + | hypothetical protein TERM 2052 1592548 - 1592511 - T 100 -14.7 -4.09739 | opp_overlap 1592511 1592515, overlap 1592515 GGAACTGTCTCAAAA TAAATTAGTATATAAAA ATAT TTTTATATACTAATTTA TTATAAAAGCTTAAG TERM 2053 1592511 - 1592548 + T 100 -14.7 -3.31322 | opp_overlap 1592511 1592515, overlap 1592515 GGAACTGTCTCAAAA TAAATTAGTATATAAAA ATAT TTTTATATACTAATTTA TTATAAAAGCTTAAG TERM 2054 1592544 - 1592515 - T 100 -11.1 -4.64861 | opp_overlap 1592511 1592515, overlap 1592511 CTGTCTCAAAATAAA TTAGTATATAAAA ATAT TTTTATATACTAA TTTATTATAAAAGCT TERM 2055 1592515 - 1592544 + T 100 -11.1 -4.30987 | opp_overlap 1592515 1592511, overlap 1592511 CTGTCTCAAAATAAA TTAGTATATAAAA ATAT TTTTATATACTAA TTTATTATAAAAGCT TERM 2056 1592597 - 1592638 + T 90 -6.7 -5.69793 | opp_overlap 1592598, overlap 1592598 CTATAAAACAAAAAA AGGCTTTCTCATAATGAAT AAAA ATGTAATATGAGAAAGCCC TTTTTTGTTTAATAT TERM 2057 1592598 - 1592637 + T 93 -10.2 -3.99436 | opp_overlap 1592598, overlap 1592597 TATAAAACAAAAAAA GGCTTTCTCATAATGAAT AAAA ATGTAATATGAGAAAGCC CTTTTTTGTTTAATA TERM 2058 1592637 - 1592598 - T 100 -8 -6.14618 | opp_overlap 1592598 1592597 TATAAAACAAAAAAA GGCTTTCTCATAATGAAT AAAA ATGTAATATGAGAAAGCC CTTTTTTGTTTAATA CLH_1492 1593392 - 1592658 - | transcriptional regulatory protein udp 1594058 - 1594840 + | uridine phosphorylase TERM 2059 1595594 - 1595616 + G 83 -10 -3.14931 | opp_overlap 1595593 GTGGATACACAGCAT TAGGTATTCC AAT GGAATATCTA TTAATAGCAAGTGCA CLH_1494 1595026 - 1596228 + | nucleoside permease NupC TERM 2060 1596317 - 1596264 - f 83 -10.9 -2.71736 | gap 1, opp_overlap 1596270 1596280, overlap 1596261 1596273 1596280 ATAAATTAATAAGAT TTTACATTATCTTAAAGTTATAAAGA TTG TCTTTATAACTTTAAGATGAT-TATA TAAAATTTATTTTAA TERM 2061 1596270 - 1596312 + F 100 -19 -3.54051 | opp_overlap 1596264 1596261 1596273 1596280, overlap 1596280 TAATAAGATTTTACA TTATCTTAAAGTTATAAAGA TTG TCTTTATAACTTTAAGATGA TTATATAAAATTTAT TERM 2062 1596309 - 1596273 - f 100 -18.5 -2.6472 | opp_overlap 1596270 1596280, overlap 1596264 1596261 1596280 TAAGATTTTACATTA TCTTAAAGTTATAAAGA TTG TCTTTATAACTTTAAGA TGATTATATAAAATT TERM 2063 1596280 - 1596302 + F 91 -10.8 -3.64609 | opp_overlap 1596273 1596264 1596261 1596280, overlap 1596270 TTACATTATCTTAAA GTTATAAAGA TTG TCTTTATAAC TTTAAGATGATTATA TERM 2064 1596302 - 1596280 - f 91 -10.8 -3.63068 | opp_overlap 1596280 1596270, overlap 1596273 1596264 1596261 TTACATTATCTTAAA GTTATAAAGA TTG TCTTTATAAC TTTAAGATGATTATA TERM 2065 1596577 - 1596540 - g 70 -5.1 -4.64598 | overlap 1596545 GAATCAGTGGAAAAA TTCAATATACCTAATTT AGAA AAACTAGGTATAGCAAA TTTACATCCTATAAA TERM 2066 1596572 - 1596545 - g 82 -9.4 -3.45433 | overlap 1596540 AGTGGAAAAATTCAA TATACCTAATTT AGAA AAACTAGGTATA GCAAATTTACATCCT deoB 1596411 - 1597601 + | phosphopentomutase TERM 2067 1597665 - 1597698 + F 87 -10.6 -3.17206 | overlap 1597663 GAGATGCAAGGATGG TCTATAGTTGAATA TTTAAT TATTCAGCTATAGA TATTCATAAATATTG CLH_1496 1597826 - 1598641 + | transketolase CLH_1497 1598654 - 1599580 + | transketolase deoD 1599653 - 1600360 + | purine nucleoside phosphorylase TERM 2068 1600419 - 1600365 - f 70 -6 -4.30719 | opp_overlap 1600369 1600371, overlap 1600370 1600371 CTTCTTTATAAGAAA TTAAAGTTCTAAGTTTTAGGTGAAGT AAT ATTTCATCTAAAACTTAGAATATTTA TTTAAGTAAGTGCAA TERM 2069 1600369 - 1600415 + F 100 -13.4 -4.46514 | opp_overlap 1600365 1600370 1600371, overlap 1600371 TTTATAAGAAATTAA AGTTCTAAGTTTTAGGTGAAGT AAT ATTTCATCTAAAACTTAGAATA TTTATTTAAGTAAGT TERM 2070 1600414 - 1600370 - f 95 -10.3 -4.24422 | opp_overlap 1600369 1600371, overlap 1600365 1600371 TTATAAGAAATTAAA GTTCTAAGTTTTAGGTGAAGT AAT ATTTCATCTAAAACTTAGAAT ATTTATTTAAGTAAG TERM 2071 1600413 - 1600371 - f 100 -13.8 -3.13568 | opp_overlap 1600369 1600371, overlap 1600370 1600365 TATAAGAAATTAAAG TTCTAAGTTTTAGGTGAAGT AAT ATTTCATCTAAAACTTAGAA TATTTATTTAAGTAA TERM 2072 1600371 - 1600413 + F 100 -18.2 -3.83744 | opp_overlap 1600371 1600370 1600365, overlap 1600369 TATAAGAAATTAAAG TTCTAAGTTTTAGGTGAAGT AAT ATTTCATCTAAAACTTAGAA TATTTATTTAAGTAA CLH_1499 1600537 - 1601181 + | putative transaldolase TERM 2073 1602241 - 1602206 - g 80 -9.2 -3.60631 | overlap 1602212 TAACAAAGAGTATAA TTGAAACAGTAAGTAA AGCA CTACTCACTGCCTCAA AAGATGCTGGGATTG TERM 2074 1603097 - 1603081 - g 70 -2.9 -5.27335 | TTTGTTAAAGAAAAA CTTCCTG AAG CTGAAAG AATAATAAATGAGAT CLH_1500 1601707 - 1603857 + | phage infection protein TERM 2075 1604118 - 1604139 + F 83 -9.5 -3.64259 | opp_overlap 1604112 1604110 1604122 1604123, overlap 1604123 AAAAATCGACAACTC CAAAGTCGC CTTA GCGATTTTG TTCTTAAAACTAATT TERM 2076 1604123 - 1604134 + F 73 -5.8 -4.89477 | opp_overlap 1604112 1604110 1604123 1604122, overlap 1604118 TCGACAACTCCAAAG TCGC CTTA GCGA TTTTGTTCTTAAAAC CLH_1501 1604226 - 1604540 + | hypothetical protein TERM 2077 1604768 - 1604721 - T 83 -9.6 -3.64902 | gap 1, opp_overlap 1604719 1604726, overlap 1604726 AATATTATAAAGCAA TAAAATGAATTCCTTGGAATA TTTACTT TAT-CCAAGGAATTCATTTAA GGTATTATTTTTTTA TERM 2078 1604763 - 1604726 - T 95 -9.5 -4.87052 | gap 1, opp_overlap 1604719 1604726, overlap 1604721 TATAAAGCAATAAAA TGAATTCCTTGGAATA TTTACTT TAT-CCAAGGAATTCA TTTAAGGTATTATTT TERM 2079 1604726 - 1604763 + T 84 -9.5 -3.69934 | gap 1, opp_overlap 1604726 1604721, overlap 1604719 TATAAAGCAATAAAA TGAATTCCTTGGAATA TTTACTT TAT-CCAAGGAATTCA TTTAAGGTATTATTT CLH_1502 1606154 - 1604781 - | Na+-driven multidrug efflux pump TERM 2080 1606466 - 1606448 - H 73 -7.6 -3.83154 | opp_overlap 1606444 1606448 1606451, overlap 1606451 GAATTAGAATTTAAA TAACTTAA GTT TTAAGTTA TATATTTAACTATAT CLH_1503 1606584 - 1608248 + | metallo-beta-lactamase superfamily protein TERM 2081 1608349 - 1608316 - f 79 -8.5 -4.08767 | opp_overlap 1608316 GCTATGCTTTGAAAA TTCATATATTATAAA ACAA CTTATAATACATGAA TTTACTTAAGGCATG CLH_1504 1608738 - 1611245 + | hypothetical protein CLH_1505 1611273 - 1612031 + | putative viral A-type inclusion protein TERM 2082 1613290 - 1613279 - g 73 -3 -5.5604 | TGAATTAATAAAAAA TCTT AATA AAGA ATTAAATGGTATAAC CLH_1506 1612038 - 1613807 + | hypothetical protein CLH_1507 1613844 - 1615646 + | putative GTPase TERM 2083 1615936 - 1615954 + F 71 -7.4 -3.99062 | opp_overlap 1615926 AAATATTACTATTGA CTCATACC TTA GGTAGGAG TTTATAATAAATATT CLH_1508 1616159 - 1617343 + | spore coat polysaccharide biosynthesis protein SpsC TERM 2084 1617485 - 1617517 + F 75 -5.8 -4.99861 | gap 1, opp_overlap 1617485 1617479, overlap 1617479 GACAATTAATTAAAA GTAGCATAT-TTAGT GAAA ACTATTATATGCTAC TTTTTATGGTTAGTA CLH_1509 1617953 - 1619113 + | transcriptional regulator CLH_1510 1619306 - 1619665 + | hypothetical protein CLH_1511 1619780 - 1619962 + | TrpF CLH_1512 1620160 - 1620699 + | amidase TERM 2085 1620730 - 1620697 - T 87 -10 -3.38514 | opp_overlap 1620700, overlap 1620695 1620693 1620700 GTTAAAGTAAATAGA TAATTTTAAGTATA ATTTCA TATACTTAAAATTA TTGGAGCTTAAGAAC TERM 2086 1620727 - 1620700 - T 70 -7.3 -3.80929 | opp_overlap 1620700, overlap 1620697 1620695 1620693 AAAGTAAATAGATAA TTTTAAGTATA ATTTCA TATACTTAAAA TTATTGGAGCTTAAG TERM 2087 1620836 - 1620790 - T 83 -6.1 -5.37043 | gap 1, opp_overlap 1620786 1620790 ATCTGATATAAAAAA CTCCTTCATGGTAATTAATTGA TATT TTAATTATTT-CCAAGAAGGAG TTCATTTTATTAAGT TERM 2088 1620790 - 1620836 + T 76 -8.3 -3.82864 | gap 1, opp_overlap 1620790, overlap 1620786 ATCTGATATAAAAAA CTCCTTCATGGTAATTAATTGA TATT TTAATTATTT-CCAAGAAGGAG TTCATTTTATTAAGT TERM 2089 1620926 - 1620942 + T 73 -4.5 -5.13343 | TTATTTTGCGTATTT TTTAGAT TTT ATCTGAA TTTTGTTTTAAGTTA CLH_1513 1621742 - 1620927 - | putative viral A-type inclusion protein TERM 2090 1621517 - 1621529 + g 86 -6.3 -5.26247 | GATCCATAGTTGTTT CAATC AAA GATTG TTTTCTTTCTTTTAA CLH_1514 1621913 - 1623739 + | putative spore-cortex-lytic enzyme CLH_1515 1623726 - 1625447 + | putative spore-cortex-lytic enzyme CLH_1516 1625609 - 1627009 + | probable aldehyde dehydrogenase AldX TERM 2091 1627096 - 1627061 - f 95 -12.2 -3.48395 | opp_overlap 1627063 1627066, overlap 1627063 1627066 ATTCTTTTTAGAGAA TATAATACACATAGAT ATAT ATCTATGTGTATTATT AGTTTATAACAGTAT TERM 2092 1627063 - 1627094 + F 100 -14.8 -3.60798 | opp_overlap 1627063 1627061 1627066, overlap 1627066 TCTTTTTAGAGAATA TAATACACATAGAT ATAT ATCTATGTGTATTA TTAGTTTATAACAGT TERM 2093 1627094 - 1627063 - f 100 -14.8 -3.31726 | opp_overlap 1627063 1627066, overlap 1627061 1627066 TCTTTTTAGAGAATA TAATACACATAGAT ATAT ATCTATGTGTATTA TTAGTTTATAACAGT TERM 2094 1627066 - 1627091 + F 100 -12.1 -3.93401 | opp_overlap 1627066 1627063 1627061, overlap 1627063 TTTTAGAGAATATAA TACACATAGAT ATAT ATCTATGTGTA TTATTAGTTTATAAC TERM 2095 1627091 - 1627066 - f 95 -12.1 -3.79874 | opp_overlap 1627063 1627066, overlap 1627063 1627061 TTTTAGAGAATATAA TACACATAGAT ATAT ATCTATGTGTA TTATTAGTTTATAAC CLH_1517 1627365 - 1628693 + | mate efflux family protein gshAB 1628677 - 1630980 + | glutamate--cysteine ligase/gamma-glutamylcysteine synthetase TERM 2096 1631010 - 1631059 + F 100 -10.2 -5.13473 | opp_overlap 1631008 1631020 1631023, overlap 1631012 TGATATAATATATTC AGTAGCAGAAGCAGCCATAAGA TAATTT TATTATGGCTTCTTCTGCTATA TTTTTTCCATATAAT TERM 2097 1631012 - 1631057 + F 100 -15 -4.19215 | opp_overlap 1631008 1631020 1631023, overlap 1631010 ATATAATATATTCAG TAGCAGAAGCAGCCATAAGA TAATTT TATTATGGCTTCTTCTGCTA TATTTTTTCCATATA TERM 2098 1631109 - 1631081 - f 70 -7.7 -3.46511 | opp_overlap 1631081, overlap 1631082 CCATATAATTTAGAA CCTCTTTTTTATA CAT TATAAAAAAGAAA TGATATAATTTTAAT TERM 2099 1631108 - 1631082 - f 72 -9 -2.67425 | opp_overlap 1631081, overlap 1631081 CATATAATTTAGAAC CTCTTTTTTATA CAT TATAAAAAAGAA ATGATATAATTTTAA CLH_1519 1631248 - 1631757 + | nudix-family protein TERM 2100 1631823 - 1631785 - T 100 -12 -4.35339 | opp_overlap 1631787, overlap 1631787 ATATTAAGCAACAAA GAGGTGTGTATAATAAAT AAA AATTATTATACACACCTT TTTATCTTATAGATG TERM 2101 1631821 - 1631787 - T 100 -14.6 -3.77023 | opp_overlap 1631787, overlap 1631785 ATTAAGCAACAAAGA GGTGTGTATAATAAAT AAA AATTATTATACACACC TTTTTATCTTATAGA TERM 2102 1631787 - 1631821 + T 100 -14.6 -5.1523 | opp_overlap 1631787 1631785 ATTAAGCAACAAAGA GGTGTGTATAATAAAT AAA AATTATTATACACACC TTTTTATCTTATAGA CLH_1520 1633202 - 1631847 - | putative integral membrane protein TERM 2103 1633341 - 1633290 - R 78 -6 -5.00196 | gap 1, opp_overlap 1633293, overlap 1633293 TCCTAAATAATAAAA GAACCCCACTTACTACTGTTT-TGG TTC CAAGAAACAGTAAAAAGTGGGGTAT ATAATTCAATATACT TERM 2104 1633293 - 1633338 + r 82 -9.9 -3.01537 | gap 1, opp_overlap 1633290 1633293 TAAATAATAAAAGAA CCCCACTTACTACTGTTT-TGG TTC CAAGAAACAGTAAAAAGTGGGG TATATAATTCAATAT TERM 2105 1633338 - 1633293 - R 100 -12.1 -4.57912 | gap 1, opp_overlap 1633293, overlap 1633290 TAAATAATAAAAGAA CCCCACTTACTACTGTTT-TGG TTC CAAGAAACAGTAAAAAGTGGGG TATATAATTCAATAT CLH_1521 1633715 - 1633404 - | hypothetical protein TERM 2106 1633467 - 1633482 + g 74 -6.2 -4.4727 | ACTTTTTGATGTTGA GGTATT ATTT AATACC TTTTGTCCATGTTCA CLH_1522 1634088 - 1634732 + | hypothetical protein TERM 2107 1634778 - 1634750 - f 70 -7.8 -3.30731 | opp_overlap 1634756 1634767 1634776, overlap 1634756 1634767 1634776 TTAATTAGTATAAGA TTATAATTAAAA CATAC TTTTAATTATAA AACGTTTAATTTTTA TERM 2108 1635168 - 1635146 - f 81 -7.1 -4.81212 | opp_overlap 1635146 TTTATTATAATAAAA GTGTACTAC ACATG GTAATACAC TTAATACAAGGAGGT CLH_1523 1635190 - 1635729 + | hypothetical protein CLH_1524 1635716 - 1636114 + | transcriptional regulator, GntR family CLH_1525 1636098 - 1636994 + | ABC transporter ATP-binding protein CLH_1526 1636975 - 1638024 + | hypothetical protein TERM 2109 1638067 - 1638039 - Tf 79 -8.9 -3.48772 | opp_overlap 1638039 AATTTTGTTAGATAA GGGATTGGTGC AAGAAAA GCAACAATCCC TTTTATATAGAGAAA TERM 2110 1638039 - 1638067 + TF 86 -8.9 -4.52589 | opp_overlap 1638039 AATTTTGTTAGATAA GGGATTGGTGC AAGAAAA GCAACAATCCC TTTTATATAGAGAAA CLH_1527 1638377 - 1638222 - | hypothetical protein CLH_1528 1638371 - 1638661 + | hypothetical protein TERM 2111 1638720 - 1638752 + FH 83 -9.3 -3.52475 | opp_overlap 1638728 1638730, overlap 1638726 AATGTCACTTTATTG TGTGAATAGAGGC AAATAAA GCCTCTATTTGCA TTGTAATCTATTAAA TERM 2112 1638984 - 1638970 - fH 78 -5.8 -5.17353 | AGATTTATTAAAAAA TTAAGT ATT ACTTAA ATAAATGTTTATTTT rluB 1639018 - 1639728 + | ribosomal large subunit pseudouridine synthase B CLH_1530 1639903 - 1640808 + | RpiR-family transcriptional regulator TERM 2113 1640829 - 1640876 + F 100 -20.4 -4.54477 | opp_overlap 1640834, overlap 1640834 GACTAATAAGTGTAA CAAAAGCCTTAAAGGAAATA TTAAATTT TATTTCCTTTAAGGCTTTTG TTTTGTAAATTTTGA TERM 2114 1640834 - 1640871 + F 100 -14.5 -5.19275 | opp_overlap 1640834, overlap 1640829 ATAAGTGTAACAAAA GCCTTAAAGGAAATA TTAAATTT TATTTCCTTTAAGGC TTTTGTTTTGTAAAT TERM 2115 1640871 - 1640834 - f 100 -14.5 -4.68705 | opp_overlap 1640834 1640829 ATAAGTGTAACAAAA GCCTTAAAGGAAATA TTAAATTT TATTTCCTTTAAGGC TTTTGTTTTGTAAAT TERM 2116 1641416 - 1641395 - g 78 -8.9 -3.16564 | AAAAACAGTAGGTAA TTCTGAAAA AAGA TTTTCAGAA GATGCTTTAAGAATG CLH_1531 1640949 - 1642247 + | tRNA nucleotidyltransferase/poly(A) polymerase family protein CLH_1532 1642266 - 1642544 + | hypothetical protein CLH_1533 1642841 - 1643803 + | alpha/beta hydrolase TERM 2117 1643851 - 1643824 - f 72 -8.6 -3.24386 | opp_overlap 1643824 1643819 AAAACGTATGAGCAA GCTATTAAACTA TAAT TTGTTTAATAGC TGCGTTAATAAGATG TERM 2118 1644243 - 1644260 + G 75 -7.1 -4.2349 | CAAGAATTTATTTAT TAAATGG AGAT CCATTTA TTTTAACTGTAGAAG CLH_1534 1644038 - 1644925 + | radical SAM domain protein TERM 2119 1645051 - 1645038 - g 70 -2.3 -5.4756 | opp_overlap 1645038 AAGTTCAACAAAAAA TGCAG GATC CAGCA TTCGCTCAAAGATTT CLH_1535 1644998 - 1645228 + | hypothetical protein TERM 2120 1645354 - 1645326 - f 95 -12 -3.762 | opp_overlap 1645326, overlap 1645318 AAAGTAATCTAAGAA GCATCTAAAATA ACTTA TATTTTAGATGC TTTTTTAGGTGGATT TERM 2121 1645326 - 1645354 + F 100 -12 -5.10497 | opp_overlap 1645326 1645318 AAAGTAATCTAAGAA GCATCTAAAATA ACTTA TATTTTAGATGC TTTTTTAGGTGGATT CLH_1536 1645498 - 1646019 + | hypothetical protein TERM 2122 1646026 - 1646064 + F 70 -7.1 -3.70446 | gap 1, opp_overlap 1646026 1646035, overlap 1646035 CAACATTAAGTTAAA GAAAAGAAGCTATCTTAA ATGC TTGAGATAGTTT-TTTTC TTGTATTCACTGTAA TERM 2123 1646035 - 1646056 + F 93 -6.7 -5.94214 | opp_overlap 1646035 1646026, overlap 1646026 GTTAAAGAAAAGAAG CTATCTTAA ATGC TTGAGATAG TTTTTTTCTTGTATT CLH_1537 1646285 - 1646476 + | hypothetical protein TERM 2124 1646648 - 1646632 - f 71 -6.7 -4.12066 | TATAAAAGATAATAA TTCATAA ATT TTATGAA GAAACAATGATAAAA TERM 2125 1646787 - 1646738 - f 89 -9.1 -4.68593 | gap 1, opp_overlap 1646740 1646743, overlap 1646740 TGTACGACGTAAAAA TAGAACTCTATTAAAATTTATATT ATA AAT-TAGATTTTAATAGAGTTCTT TTGAGAGAGGAAGAA TERM 2126 1646740 - 1646785 + F 100 -13.9 -4.07568 | gap 1, opp_overlap 1646740 1646738, overlap 1646743 TACGACGTAAAAATA GAACTCTATTAAAATTTATATT ATA AAT-TAGATTTTAATAGAGTTC TTTTGAGAGAGGAAG TERM 2127 1646785 - 1646740 - f 100 -11.7 -3.95883 | gap 1, opp_overlap 1646740 1646743, overlap 1646738 TACGACGTAAAAATA GAACTCTATTAAAATTTATATT ATA AAT-TAGATTTTAATAGAGTTC TTTTGAGAGAGGAAG TERM 2128 1646743 - 1646782 + F 93 -9.8 -4.17048 | gap 1, opp_overlap 1646740 1646738, overlap 1646740 GACGTAAAAATAGAA CTCTATTAAAATTTATATT ATA AAT-TAGATTTTAATAGAG TTCTTTTGAGAGAGG topB 1646807 - 1648999 + | DNA topoisomerase III TERM 2129 1649216 - 1649245 + F 88 -8.1 -4.76041 | opp_overlap 1649216 TAAAAACAGTAGAAA GAGTTTATTATAT TTGA ATATAATAGGCTC TTTTTCATAAATATA CLH_1539 1649414 - 1650481 + | N- phage replisome organiser CLH_1540 1650637 - 1651017 + | glyoxalase I CLH_1541 1651260 - 1652333 + | integral membrane protein TERM 2130 1652506 - 1652492 - g 70 -5.8 -4.28597 | ATAATTAAGAAAGAA GATAAA ATA TTTATC ACGCGTAGAGGATAT mutT 1652450 - 1652833 + | MutT/nudix family protein TERM 2131 1652852 - 1652901 + F 100 -24.1 -2.8937 | opp_overlap 1652858, overlap 1652858 AGTTACTAGTTAACG TTTAAATGGGCAATTACCAATGA ATAA TCATTGGTAATTGCCCATTTTAA TATATACAAATATAT TERM 2132 1652858 - 1652895 + F 100 -23.1 -4.39166 | opp_overlap 1652858, overlap 1652852 TAGTTAACGTTTAAA TGGGCAATTACCAATGA ATAA TCATTGGTAATTGCCCA TTTTAATATATACAA TERM 2133 1652895 - 1652858 - f 100 -23.1 -3.61268 | opp_overlap 1652858 1652852 TAGTTAACGTTTAAA TGGGCAATTACCAATGA ATAA TCATTGGTAATTGCCCA TTTTAATATATACAA CLH_1543 1653194 - 1654576 + | sugar ABC transporter TERM 2134 1654587 - 1654621 + F 81 -8.8 -3.86346 | opp_overlap 1654577 1654591, overlap 1654591 AATAGTTTATTAAAA TAAAGCAAAGATGATA TTG TTTTATCTTTGCTTTG TTTATAAAGGAGTGA TERM 2135 1654591 - 1654617 + F 77 -7.4 -4.55295 | opp_overlap 1654591, overlap 1654587 GTTTATTAAAATAAA GCAAAGATGATA TTG TTTTATCTTTGC TTTGTTTATAAAGGA CLH_1544 1654643 - 1655539 + | sugar ABC transporter permease protein CLH_1545 1655566 - 1656393 + | sugar ABC transporter CLH_1546 1656407 - 1657495 + | unknwon conserved protein TERM 2136 1657503 - 1657533 + F 95 -11.4 -3.66883 | opp_overlap 1657503 ATAAATAATATATGA GGCTGTTAATTAGT AAT ATTAATTAATAGCC TTTAGAGTATATTAG CLH_1547 1657564 - 1658625 + | transcriptional regulator CLH_1548 1658639 - 1659556 + | hypothetical protein TERM 2137 1660478 - 1660455 - g 71 -4 -5.04222 | overlap 1660470 TAAGGAAATTAAAAA TATGAATGAT AATT ATGATTCATA TCAAATACCTACAAT TERM 2138 1660900 - 1660880 - g 78 -5.6 -4.98911 | opp_overlap 1660880 TAGTAGAAAAACAAA TTAAAGAA GAGGG TTCTTTAA TTAATTTATATAAAG CLH_1549 1659571 - 1661172 + | trehalose-6-phosphate hydrolase manA 1661350 - 1662285 + | mannose-6-phosphate isomerase, class I CLH_1551 1662296 - 1662937 + | glucokinase TERM 2139 1662956 - 1662984 + F 70 -4.8 -4.84642 | gap 2 AATTGAATTGGAAGG CTACTCCATATGTA TTT TACA-A-GGAGTAG TTTTATTAATTTCGA CLH_1552 1663042 - 1664253 + | transporter, major facilitator family TERM 2140 1664292 - 1664312 + F 77 -6.9 -4.56153 | opp_overlap 1664285 1664292, overlap 1664290 TTAAGATATAAAGTA GAGTCTATT TTA AATGGGCTC TTATTTTTATACTAA TERM 2141 1664602 - 1664588 - f 70 -7.8 -3.322 | opp_overlap 1664582 AGTTGGATAGAGCAA CGCCCT TCT AAGGCG TGGGCCAGGGGTTCG TERM 2142 1664757 - 1664722 - f 76 -9.2 -2.84218 | opp_overlap 1664723, overlap 1664721 1664719 GAGCCACCAAAATAT TGTCCAAAGTAAGAAT TAAT ATTTTTACTTTGGACT TTTTTATTTTATTAA TERM 2143 1664723 - 1664756 + F 100 -14.9 -5.92399 | opp_overlap 1664722 1664721 1664719 AGCCACCAAAATATT GTCCAAAGTAAGAAT TAAT ATTTTTACTTTGGAC TTTTTTATTTTATTA TERM 2144 1665156 - 1665143 - g 74 -2.5 -5.5943 | AAATTATGAAAAAAA TAAAA AAAG TTTTA GTAGGTATTTTAGGA CLH_1555 1665133 - 1665897 + | cell wall binding repeat domain protein TERM 2145 1665955 - 1665980 + F 74 -4.9 -5.09762 | gap 1, opp_overlap 1665948 1665957 1665959, overlap 1665948 1665957 TGTTAAGATCTAAAG TA-GAGTCTATT TTA AATAGGCTCTTA TTTTTATATTAAAAT TERM 2146 1665957 - 1665977 + F 89 -9.1 -4.63863 | opp_overlap 1665948 1665957 1665959, overlap 1665948 1665955 TTAAGATCTAAAGTA GAGTCTATT TTA AATAGGCTC TTATTTTTATATTAA TERM 2147 1666268 - 1666254 - f 70 -7.8 -3.322 | opp_overlap 1666248 AGCTGGATAGAGCAA CGCCCT TCT AAGGCG TGGGCCAGGGGTTCG TERM 2148 1666390 - 1666421 + F 100 -10.4 -6.34616 | overlap 1666417 GCCACCAAAATATTG TCCAAAGTAGAAAT GTGA GTTTTTACTTTGGA TTTTTTTTATTTTAG TERM 2149 1667160 - 1667200 + F 100 -15.1 -5.63374 | opp_overlap 1667160 GGCTTAACATTAAAA CATCCTTATAGCTATAA CTTAGTT TTGTAGCTATAAGGATG TTTTTTTACTCTTAA TERM 2150 1667200 - 1667160 - f 100 -12.9 -4.4261 | opp_overlap 1667160 GGCTTAACATTAAAA CATCCTTATAGCTATAA CTTAGTT TTGTAGCTATAAGGATG TTTTTTTACTCTTAA TERM 2151 1667262 - 1667249 - f 75 -3.9 -5.45726 | TATACTTGAAAAAAA CAAAT TGTA ATTTG CATGGGAGAATACAA CLH_1558 1667280 - 1667687 + | hypothetical protein TERM 2152 1668306 - 1668288 - g 91 -8.2 -4.82855 | overlap 1668305 CATCAAAGTTAAAAA TGTTCTCG AAT CAAGAACA AGAAAAAGTTCTTAA TERM 2153 1668682 - 1668666 - g 84 -9.5 -3.61268 | opp_overlap 1668665 1668664 TATCGAATGTGGAAA GCAAAGT AGG ACTTTGC ACTTTAGTAATTGAG CLH_1559 1667966 - 1668928 + | transcriptional regulator, DeoR family TERM 2154 1668916 - 1668950 + F 74 -8.8 -2.95298 | opp_overlap 1668929, overlap 1668906 AGAGTTGATGGCCCA TTATCTTAACTGAC TGAATTT GTCAGTGAAGATAA TATATAATAGATCGA CLH_1560 1669029 - 1669655 + | intracellular protease, ThiJ/PfpI family CLH_1561 1669796 - 1670446 + | hypothetical protein TERM 2155 1670498 - 1670538 + F 95 -9.4 -4.82901 | overlap 1670502 ACAAAGTATCCCATT TAAAGAGTTATAATGATT TTTTT AATTGTTATAGCTCTTTA TTTTTCTCCGAAAAA TERM 2156 1670502 - 1670534 + F 75 -5.8 -4.96501 | overlap 1670498 AGTATCCCATTTAAA GAGTTATAATGATT TTTTT AATTGTTATAGCTC TTTATTTTTCTCCGA CLH_1562 1671139 - 1671591 + | hypothetical protein CLH_1563 1673173 - 1671938 - | domain of unknown function family TERM 2157 1672184 - 1672196 + g 71 -2.7 -5.48213 | opp_overlap 1672180, overlap 1672180 AATGTATCCAATTGC TGATG CAA TATCA TTTTTCTTTTCCATA CLH_1564 1674383 - 1673163 - | transport protein TERM 2158 1674036 - 1674013 - G 74 -6.8 -4.37092 | AGTTCTTGGATAAAA CTTCTAGATG TAGA CATATAGAAG GTCCAACCAATTCCA TERM 2159 1674147 - 1674162 + g 79 -4.8 -5.48063 | opp_overlap 1674145 1674147 AATTCTTACAACATA TGTAAT TGAA ATTACA TTTTTTCTATTAAAT TERM 2160 1674498 - 1674480 - R 72 -6.2 -4.45738 | TATGTGAACAATAAA TTATTATT TTT AATAATAA ACTTAAACAATTATA CLH_1565 1675543 - 1674509 - | threonyl-tRNA synthetase 1 TERM 2161 1676061 - 1676007 - H 78 -7.6 -4.34267 | opp_overlap 1676011 1676012 1676014, overlap 1676012 1676014 TGAGATAAGTTAAAA TTAAACACTACTATATTTACATAATA TGT TATTATATAAATATAGTAGTAATTTT TTTACAAATTAATAA TERM 2162 1676011 - 1676057 + H 100 -8.4 -5.43866 | opp_overlap 1676007 1676012 1676014, overlap 1676012 1676014 ATAAGTTAAAATTAA ACACTACTATATTTACATAATA TGT TATTATATAAATATAGTAGTAA TTTTTTTACAAATTA TERM 2163 1676012 - 1676056 + H 100 -11.9 -3.85235 | opp_overlap 1676007 1676012 1676014, overlap 1676011 1676014 TAAGTTAAAATTAAA CACTACTATATTTACATAATA TGT TATTATATAAATATAGTAGTA ATTTTTTTACAAATT TERM 2164 1676056 - 1676012 - H 100 -16.3 -4.23528 | opp_overlap 1676012 1676011 1676014, overlap 1676007 1676014 TAAGTTAAAATTAAA CACTACTATATTTACATAATA TGT TATTATATAAATATAGTAGTA ATTTTTTTACAAATT TERM 2165 1676014 - 1676054 + H 100 -14.5 -3.49966 | opp_overlap 1676012 1676007 1676014, overlap 1676012 1676011 AGTTAAAATTAAACA CTACTATATTTACATAATA TGT TATTATATAAATATAGTAG TAATTTTTTTACAAA TERM 2166 1676054 - 1676014 - H 100 -16.7 -3.70102 | opp_overlap 1676014 1676012 1676011, overlap 1676012 1676007 AGTTAAAATTAAACA CTACTATATTTACATAATA TGT TATTATATAAATATAGTAG TAATTTTTTTACAAA CLH_1566 1676265 - 1676447 + | hypothetical protein TERM 2167 1676528 - 1676550 + F 100 -8.5 -5.56112 | opp_overlap 1676505 1676528 TAATTAAATTACAAA CATCAGCAC TGAAT GTGTTGATG TTTTTTAATTTTTAT TERM 2168 1676980 - 1676966 - g 72 -5.8 -4.62471 | GTGAACTCGCAAAAA TAATAG TAT CTATTA ATGACAGTCATACTA CLH_1567 1676668 - 1677942 + | peptidase, S41 family CLH_1568 1677993 - 1679249 + | putative cytoplasmic protein CLH_1569 1679349 - 1680536 + | transcriptional regulator, AraC family protein TERM 2169 1680583 - 1680613 + F 74 -4.8 -5.09426 | opp_overlap 1680583 TGCAAATTGGAGAAA CGTTATCATTAATT TAT AAGTTGTGATAACG TTTTTTAAAATTAAA TERM 2170 1680720 - 1680706 - g 74 -8.6 -3.19157 | opp_overlap 1680706 1680705 1680703 TAGCAATTGCAGGAA CCTTTG ATT CAAAGG GTGTTGAATATTTAT TERM 2171 1680706 - 1680720 + G 70 -8.6 -2.5084 | opp_overlap 1680706, overlap 1680705 1680703 TAGCAATTGCAGGAA CCTTTG ATT CAAAGG GTGTTGAATATTTAT TERM 2172 1681553 - 1681526 - g 93 -11.4 -3.63805 | opp_overlap 1681524 ATTGGATATGGTAAA CTTTGGACCAGT AGAC ACTGTTCCAAAG AAGTTTGAAGGTAGA CLH_1570 1680681 - 1681889 + | hypothetical protein CLH_1571 1681994 - 1682815 + | transcriptional regulator TERM 2173 1683075 - 1683020 - f 82 -9.3 -3.42256 | gap 1, opp_overlap 1683020 1683022 1683073 1683074, overlap 1683018 1683047 ATGTATGTAACAATA TGCTCCACCTTGT-ATAGGCACTTAA AATAA TAAAATGTCTATTACAAGGTGGAGTA TTTTTTATGTCTAAA TERM 2174 1683020 - 1683075 + F 100 -11.5 -5.4251 | gap 1, opp_overlap 1683018 1683020 1683047, overlap 1683022 1683073 1683074 ATGTATGTAACAATA TGCTCCACCTTGT-ATAGGCACTTAA AATAA TAAAATGTCTATTACAAGGTGGAGTA TTTTTTATGTCTAAA TERM 2175 1683022 - 1683073 + F 100 -11.9 -4.34353 | gap 1, opp_overlap 1683020 1683018 1683047, overlap 1683020 GTATGTAACAATATG CTCCACCTTGT-ATAGGCACTTAA AATAA TAAAATGTCTATTACAAGGTGGAG TATTTTTTATGTCTA mscL 1683276 - 1683704 + | large conductance mechanosensitive channel protein TERM 2176 1683850 - 1683878 + F 80 -3.3 -5.87996 | overlap 1683854 ATATAGTCTAAAAAA GAAATCAATATTT TTT GAGTATTGATTTA TTTTTTTATTAATTA TERM 2177 1683854 - 1683874 + F 72 -4.1 -5.33131 | overlap 1683850 AGTCTAAAAAAGAAA TCAATATTT TTT GAGTATTGA TTTATTTTTTTATTA TERM 2178 1683898 - 1683908 + F 70 -2.6 -5.53991 | opp_overlap 1683898, overlap 1683887 TTTATTAATTAAAAT TAAA TTT TTTA TTTTTTTACTGAATA hypB 1684249 - 1684920 + | hydrogenase accessory protein HypB CLH_1574 1684952 - 1687642 + | pyridine nucleotide-disulphide oxidoreductase family protein CLH_1575 1687751 - 1688092 + | hydrogenase nickel incorporation protein CLH_1576 1688343 - 1689404 + | cobalamin cbiQ 1689426 - 1690232 + | cobalt ABC transporter, permease protein CbiQ CLH_1578 1690233 - 1690949 + | cobalt import ATP-binding protein CbiO CLH_1579 1692065 - 1691142 - | hypothetical protein CLH_1580 1693114 - 1692647 - | transcription elongation factor GreA TERM 2179 1694762 - 1694776 + G 70 -8.6 -2.57522 | overlap 1694754 1694753 1694761 1694756 GAAGTTCTGCAGCTA CTGCAA TTG TTGCAG GTTGCTGTGCATTGC CLH_1581 1693255 - 1695072 + | CspA TERM 2180 1696395 - 1696385 - g 76 -6.8 -4.56093 | opp_overlap 1696384 1696385 AAGGGAATTACAAAA CCTG GAA CAGG ATTTAGAGCACCAGA CLH_1582 1695092 - 1696819 + | CspC CLH_1583 1697013 - 1697942 + | DNA polymerase III subunit epsilon CLH_1584 1699365 - 1698172 - | hypothetical protein CLH_1585 1699481 - 1700362 + | LysR-family transcriptional regulator TERM 2181 1700453 - 1700412 - T 78 -7.6 -4.33754 | opp_overlap 1700414 1700418 1700423, overlap 1700414 1700418 1700423 AATGATAATTTAAAA TATAAATAAAAGTGATGT TAATTT ACTTCACTTTTATTTATT ATATGTAATTAAATT TERM 2182 1700451 - 1700414 - T 90 -10.2 -3.76167 | opp_overlap 1700414 1700418 1700423, overlap 1700412 1700418 1700423 TGATAATTTAAAATA TAAATAAAAGTGATGT TAATTT ACTTCACTTTTATTTA TTATATGTAATTAAA TERM 2183 1700414 - 1700451 + T 89 -10.2 -3.646 | opp_overlap 1700414 1700412 1700418 1700423, overlap 1700418 1700423 TGATAATTTAAAATA TAAATAAAAGTGATGT TAATTT ACTTCACTTTTATTTA TTATATGTAATTAAA TERM 2184 1700447 - 1700418 - T 75 -6.6 -4.47679 | opp_overlap 1700414 1700418 1700423, overlap 1700414 1700412 1700423 AATTTAAAATATAAA TAAAAGTGATGT TAATTT ACTTCACTTTTA TTTATTATATGTAAT TERM 2185 1700418 - 1700447 + T 75 -6.6 -4.43576 | opp_overlap 1700418 1700414 1700412 1700423, overlap 1700414 1700423 AATTTAAAATATAAA TAAAAGTGATGT TAATTT ACTTCACTTTTA TTTATTATATGTAAT CLH_1586 1701296 - 1700565 - | exonuclease, RNase T and DNA polymerase III TERM 2186 1701077 - 1701058 - G 70 -8 -3.04558 | AAATCATCATATACA TCTGAAAA ATAT TTTTCAGA ATTAACCATTTCAGT TERM 2187 1702305 - 1702286 - g 77 -2.1 -5.82316 | opp_overlap 1702286 ACTATGTAAAAAAAA GTGGATA TTATGC TTTCCAC CTTTTATATTAGCAC CLH_1587 1701996 - 1702931 + | hypothetical protein TERM 2188 1703197 - 1703174 - g 80 -3.8 -5.72622 | opp_overlap 1703174 1703191 TGGAGAAATAAAAAA TGCCTAGGGA AATA TCCTTATGCA TTTTTTTAAAATCAT TERM 2189 1703174 - 1703197 + G 86 -6 -5.44721 | opp_overlap 1703174, overlap 1703191 TGGAGAAATAAAAAA TGCCTAGGGA AATA TCCTTATGCA TTTTTTTAAAATCAT CLH_1588 1703060 - 1703206 + | hypothetical protein CLH_1589 1703490 - 1704080 + | hypothetical protein TERM 2190 1704291 - 1704323 + F 89 -12.3 -2.87028 | opp_overlap 1704288 1704291, overlap 1704288 1704287 ATATTAAAGATAGCA GTAGTAACTTATATT TAT AGTATGAGTTACTAC TAAATTTTATTATAA TERM 2191 1704584 - 1704606 + F 100 -7.8 -5.94597 | CGGAATTACTATTAC TCTCTTCTAA GAT TTAGGAGGGA TTTTTTTTGGTATTA TERM 2192 1705276 - 1705260 - g 71 -3.8 -5.17488 | AATAGGAAAAGAAAA TAATAG GGATT CTATTA GAAAAACACCAAAGA TERM 2193 1705655 - 1705667 + G 72 -6.3 -4.26076 | opp_overlap 1705655 1705666, overlap 1705666 GATTGTCACAGTATA TATCC ATA GGATA TTTTGATCAAAATCA CLH_1590 1704613 - 1706268 + | ABC transporter, ATP-binding protein TERM 2194 1706312 - 1706342 + F 83 -7.7 -4.61868 | gap 1, opp_overlap 1706310 1706312 1706313, overlap 1706313 ATATATTATACAATA GGGCTGTATC-AGA TTTA TCTTGATACAGCCA TTTTATATATAAATA TERM 2195 1706342 - 1706312 - f 70 -7.7 -3.36762 | gap 1, opp_overlap 1706312 1706313, overlap 1706310 1706313 ATATATTATACAATA GGGCTGTATC-AGA TTTA TCTTGATACAGCCA TTTTATATATAAATA TERM 2196 1706341 - 1706313 - f 83 -11.2 -2.61334 | gap 1, opp_overlap 1706313 1706312, overlap 1706312 1706310 TATATTATACAATAG GGCTGTATC-AGA TTTA TCTTGATACAGCC ATTTTATATATAAAT TERM 2197 1706313 - 1706341 + F 93 -11.2 -3.36398 | gap 1, opp_overlap 1706312 1706310 1706313, overlap 1706312 TATATTATACAATAG GGCTGTATC-AGA TTTA TCTTGATACAGCC ATTTTATATATAAAT TERM 2198 1706416 - 1706395 - f 72 -6.1 -4.39828 | opp_overlap 1706387 1706398 AATAGCTTTATAAAA TAATATTAT GGTA ATAATATTA AATGTAAAAGGCTTG TERM 2199 1707358 - 1707375 + G 70 -5.7 -4.3014 | CAAAGAAAAACATTG GATTTTA TACC TAAAATC TTTTCATACATCTAT TERM 2200 1707581 - 1707595 + G 80 -5.8 -5.09173 | TCTTAAAATCATTTA CATATA GCG TATATG TTTTTTCAGCTGTTG CLH_1591 1706539 - 1707729 + | hypothetical protein TERM 2201 1710420 - 1710409 - g 73 -3 -5.41143 | opp_overlap 1710393 TATTTTCTAAAAAAA TAAG TTCT CTTA ACAAATGGAAAATAT TERM 2202 1716047 - 1716074 + G 86 -10 -3.61356 | opp_overlap 1716045 AATATATGAACACTG CTTAAGAGCTAT AGAA AAAGCTCTTAAG TTTGGAATACATAAT TERM 2203 1717082 - 1717064 - g 78 -4.6 -5.53436 | AGATAAGAGAAAAAA CTCAAATA ATT TAGTTGAG TTACAAGTTACAAGT CLH_1592 1707969 - 1717211 + | 319-kDA protein TERM 2204 1717379 - 1717330 - T 83 -7.5 -4.63526 | opp_overlap 1717330 1717354 AGAAGTAGAAACAAA CTTAGATAAAATTTAAGTCCACT TTTT AGATAATTTAAATTTTATCTAAG TAATATTTCTATCTA CLH_1593 1718275 - 1717454 - | nitroreductase family protein fused to ferredoxin domain CLH_1594 1718724 - 1719605 + | transcriptional regulator, LysR family TERM 2205 1719729 - 1719768 + F 83 -6.8 -5.09426 | opp_overlap 1719729 TTGGATTAGTAAAAA GTATTAGTTAATGA GCAATCAGACCA TCATTAACTAATAC TTTTTTGAAATTAGG TERM 2206 1719768 - 1719729 - f 78 -6.8 -4.77036 | gap 1, opp_overlap 1719729 TTGGATTAGTAAAAA GTATTAGTTAATGAGCAAT CAG ACCA-TCATTAACTAATAC TTTTTTGAAATTAGG hupS 1720112 - 1721053 + | [Ni/Fe] hydrogenase, small subunit TERM 2207 1722201 - 1722214 + G 70 -8.1 -3.07005 | opp_overlap 1722198 1722201, overlap 1722192 ATTGGTTTAACAGGA GCACC TAGA GGTGC TCTTGGACATTGGTT hupL 1721058 - 1722473 + | [Ni/Fe] hydrogenase, large subunit CLH_1597 1722470 - 1722943 + | hydrogenase maturation protease superfamily TERM 2208 1723247 - 1723235 - g 70 -4.9 -4.69664 | overlap 1723237 TACACTATGTAAAAA TTCTA TTT TAGAA ATAAAAGAATCAAAG CLH_1598 1723059 - 1723400 + | putative hydrogenase nickel incorporation protein TERM 2209 1723860 - 1723847 - g 81 -3.1 -5.89921 | overlap 1723855 1723858 ACTATAATAAAAAAA CTACC ATAT GATAG GTGTAACACAACTAT hypF 1723415 - 1725766 + | [NiFe] hydrogenase maturation protein HypF hypC 1725784 - 1725999 + | hydrogenase assembly chaperone HypC/HupF hypE 1726164 - 1727177 + | hydrogenase expression/formation protein HypE CLH_1602 1727316 - 1728323 + | hydrogenase isoenzymes formation protein HypD TERM 2210 1728404 - 1728421 + F 100 -11.3 -4.65722 | opp_overlap 1728403 1728402 AATAGTGTTTAAAGG GGCTTGG TATT CCAAGCC TTTATTTATGTATAG TERM 2211 1728525 - 1728537 + F 77 -4.8 -5.34555 | TGTCACAAAGTGAGC GTGG AGCAG CCAC TTTTTTATGATATAG CLH_1603 1728525 - 1728656 + | hypothetical protein CLH_1604 1728944 - 1730884 + | periplasmic [Fe] hydrogenase 1 TERM 2212 1730981 - 1730956 - f 78 -6.2 -5.01535 | opp_overlap 1730956 TGATAATTATAAAAA TCAACGCATA GTTAAG TGTGCGTTGA TTTTTTTCAGTATAA TERM 2213 1730956 - 1730981 + F 100 -8.4 -5.50499 | opp_overlap 1730956 TGATAATTATAAAAA TCAACGCATA GTTAAG TGTGCGTTGA TTTTTTTCAGTATAA TERM 2214 1731743 - 1731733 - f 73 -2.6 -5.76633 | GTATAGAGAAAAAAA TAAA GCT TTTA AAATAAATACTAATA TERM 2215 1732689 - 1732656 - f 74 -4.7 -5.18995 | opp_overlap 1732656 AAGATAATAGAAAAA TACTTCAGAATAAAT TTAT ACTTAAGCTGAAGTA TTTTTTTCTTGTACA TERM 2216 1732656 - 1732689 + F 76 -2.5 -5.88565 | opp_overlap 1732656 AAGATAATAGAAAAA TACTTCAGAATAAAT TTAT ACTTAAGCTGAAGTA TTTTTTTCTTGTACA TERM 2217 1734696 - 1734671 - g 73 -7.6 -3.70307 | overlap 1734669 GGTATTGAACAAATA GCAGATGTTG TACAAT CTACATCTGC AATAGCGGAAGAAAG CLH_1607 1733111 - 1734793 + | methyl-accepting chemotaxis sensory transducer TERM 2218 1734836 - 1734879 + F 82 -10.7 -2.93572 | opp_overlap 1734842, overlap 1734842 AAAAAACAATTGTTG TGAAAACCACTTAAATATT TTAAAC GGTATTTAAGTGGTTTTTA ATTTGTACAATAAAT TERM 2219 1734842 - 1734873 + F 90 -7.5 -5.04601 | opp_overlap 1734842, overlap 1734836 CAATTGTTGTGAAAA CCACTTAAATATT TTAAAC GGTATTTAAGTGG TTTTTAATTTGTACA TERM 2220 1735583 - 1735599 + F 71 -5.3 -4.66938 | ATGTAAATGATAAGC TTTTATT AGA AATAAAA TTTTGTATTGAAAAT CLH_1608 1735647 - 1736147 + | hypothetical protein TERM 2221 1737292 - 1737280 - g 70 -6.3 -4.2558 | GATGCTGGACGAAAA TGGAA AAG TTCCA AACATAAAGAAAGCT CLH_1609 1736429 - 1737751 + | xanthine/uracil permease family protein TERM 2222 1737803 - 1737772 - f 100 -9.8 -5.77856 | gap 1, opp_overlap 1737772 AATAAATCAAAAAAA CTTCTTTTTAAC-AT TAA ATAGTTAAAAAGAAG TTTTTTTTTATGCAA TERM 2223 1737772 - 1737803 + F 100 -9.8 -6.22802 | gap 1, opp_overlap 1737772 AATAAATCAAAAAAA CTTCTTTTTAAC-AT TAA ATAGTTAAAAAGAAG TTTTTTTTTATGCAA TERM 2224 1737872 - 1737899 + F 86 -8.8 -4.47679 | opp_overlap 1737871 1737877, overlap 1737877 GCTGATAATATATAC TAAAATTATATT ATTT AATATAATTTTA TTTGTATTTTGGGTT TERM 2225 1737877 - 1737894 + F 73 -4.3 -5.15682 | opp_overlap 1737877 1737871, overlap 1737872 TAATATATACTAAAA TTATATT ATTT AATATAA TTTTATTTGTATTTT CLH_1610 1738021 - 1740084 + | methyl-accepting chemotaxis protein TERM 2226 1740133 - 1740171 + F 100 -12.8 -4.77173 | opp_overlap 1740127 1740133 1740136 AAATATAAAGTATAA TAAGTATTTTCTTGGTGA CTT TAATCAAGAAAATACTTA TTTATTTTGTAAAAA TERM 2227 1740171 - 1740133 - f 91 -10.6 -3.69613 | opp_overlap 1740133, overlap 1740127 1740136 AAATATAAAGTATAA TAAGTATTTTCTTGGTGA CTT TAATCAAGAAAATACTTA TTTATTTTGTAAAAA TERM 2228 1740168 - 1740136 - f 75 -7.9 -3.94823 | opp_overlap 1740133, overlap 1740133 1740127 TATAAAGTATAATAA GTATTTTCTTGGTGA CTT TAATCAAGAAAATAC TTATTTATTTTGTAA TERM 2229 1740216 - 1740194 - f 84 -5 -5.75538 | opp_overlap 1740194 1740196, overlap 1740188 TGTAAAAAAGAAAAA TATTTCAAAA ATA TGTTGAAATA TCGTGAAACATATAG CLH_1611 1740507 - 1740728 + | Map TERM 2230 1740794 - 1740838 + F 75 -6.8 -4.42743 | gap 1, opp_overlap 1740796 1740798, overlap 1740796 ATTATATATGTATTT AATAGCTTAATGTATTTTAGT ATAT ACTTAA-TACATTAAGCTATA TTTATATTCTTTATG TERM 2231 1740796 - 1740836 + F 84 -9.4 -3.79177 | gap 1, opp_overlap 1740796 1740798, overlap 1740794 TATATATGTATTTAA TAGCTTAATGTATTTTAGT ATAT ACTTAA-TACATTAAGCTA TATTTATATTCTTTA TERM 2232 1740836 - 1740796 - f 78 -9.4 -3.09491 | gap 1, opp_overlap 1740796 1740794, overlap 1740798 TATATATGTATTTAA TAGCTTAATGTATTTTAGT ATAT ACTTAA-TACATTAAGCTA TATTTATATTCTTTA CLH_1612 1740935 - 1741711 + | endonuclease/exonuclease/phosphatase family protein TERM 2233 1741745 - 1741712 - f 79 -8.3 -4.13037 | opp_overlap 1741717, overlap 1741717 ATAAATATTAAATAA TAAAAGTAGTTCAAC AGAT GTTGGACTACTTTTT TGTTATGAAACTGTA TERM 2234 1741740 - 1741717 - f 91 -8.2 -5.02606 | opp_overlap 1741717, overlap 1741712 TATTAAATAATAAAA GTAGTTCAAC AGAT GTTGGACTAC TTTTTTGTTATGAAA TERM 2235 1741717 - 1741740 + F 100 -10.4 -5.55769 | opp_overlap 1741712 1741717 TATTAAATAATAAAA GTAGTTCAAC AGAT GTTGGACTAC TTTTTTGTTATGAAA TERM 2236 1742663 - 1742651 - g 72 -4.9 -4.82667 | overlap 1742661 TGATGACATTAAAAA TAATG AAT CATTA AATATTAAAACTTAT CLH_1613 1741986 - 1742918 + | bacitracin transport ATP-binding protein BcrA CLH_1614 1742933 - 1744618 + | putative permease TERM 2237 1744670 - 1744615 - f 80 -6.4 -4.91573 | opp_overlap 1744618 1744620 1744622 1744630, overlap 1744620 1744622 1744625 1744630 AAAAGATATTAAAAA TTAGATACTATAAAAGCCTGTATTTA TAAA TGAATACAGGCTTTTATGGTCTATTA TTAATGATAAATATA TERM 2238 1744618 - 1744667 + F 95 -12.5 -3.75292 | opp_overlap 1744615 1744620 1744622 1744625 1744630, overlap 1744620 1744622 1744630 AGATATTAAAAATTA GATACTATAAAAGCCTGTATTTA TAAA TGAATACAGGCTTTTATGGTCTA TTATTAATGATAAAT TERM 2239 1744665 - 1744620 - f 87 -10.7 -3.2082 | opp_overlap 1744618 1744620 1744622 1744630, overlap 1744615 1744622 1744625 1744630 ATATTAAAAATTAGA TACTATAAAAGCCTGTATTTA TAAA TGAATACAGGCTTTTATGGTC TATTATTAATGATAA TERM 2240 1744620 - 1744665 + F 100 -15.1 -3.45742 | opp_overlap 1744620 1744615 1744622 1744625 1744630, overlap 1744618 1744622 1744630 ATATTAAAAATTAGA TACTATAAAAGCCTGTATTTA TAAA TGAATACAGGCTTTTATGGTC TATTATTAATGATAA TERM 2241 1744622 - 1744663 + F 100 -17.7 -3.29544 | opp_overlap 1744622 1744620 1744615 1744625 1744630, overlap 1744620 1744618 1744630 ATTAAAAATTAGATA CTATAAAAGCCTGTATTTA TAAA TGAATACAGGCTTTTATGG TCTATTATTAATGAT TERM 2242 1744663 - 1744622 - f 100 -13.3 -3.15182 | opp_overlap 1744620 1744618 1744622 1744630, overlap 1744620 1744615 1744625 1744630 ATTAAAAATTAGATA CTATAAAAGCCTGTATTTA TAAA TGAATACAGGCTTTTATGG TCTATTATTAATGAT TERM 2243 1744660 - 1744625 - f 93 -13.6 -2.76198 | opp_overlap 1744622 1744620 1744618 1744630, overlap 1744622 1744620 1744615 1744630 AAAAATTAGATACTA TAAAAGCCTGTATTTA TAAA TGAATACAGGCTTTTA TGGTCTATTATTAAT TERM 2244 1744655 - 1744630 - f 86 -9.1 -4.53163 | opp_overlap 1744622 1744620 1744618 1744630, overlap 1744625 1744622 1744620 1744615 TTAGATACTATAAAA GCCTGTATTTA TAAA TGAATACAGGC TTTTATGGTCTATTA TERM 2245 1744630 - 1744655 + F 100 -11.3 -4.5477 | opp_overlap 1744630 1744625 1744622 1744620 1744615, overlap 1744622 1744620 1744618 TTAGATACTATAAAA GCCTGTATTTA TAAA TGAATACAGGC TTTTATGGTCTATTA CLH_1615 1744801 - 1745478 + | lipoprotein-releasing system ATP-binding protein LolD TERM 2246 1746117 - 1746107 - g 74 -2.6 -5.73978 | AGTAGAAATAAAAAA TATT GCT AATA GAATAGGAATAAGTA TERM 2247 1746927 - 1746886 - g 73 -8.3 -3.48924 | opp_overlap 1746887 1746896 1746900, overlap 1746887 1746889 1746896 1746923 TGACTGTTTATAGAA GCATACCAAATGAATTTAA CAGT TTAAATTCATTAGATATGT TAAATAAACATAAAA TERM 2248 1746926 - 1746887 - g 93 -11.8 -2.6914 | opp_overlap 1746887 1746896 1746900, overlap 1746886 1746889 1746896 1746923 GACTGTTTATAGAAG CATACCAAATGAATTTAA CAGT TTAAATTCATTAGATATG TTAAATAAACATAAA TERM 2249 1746887 - 1746926 + G 78 -9.6 -3.06183 | opp_overlap 1746886 1746887 1746889 1746896 1746923, overlap 1746896 1746900 GACTGTTTATAGAAG CATACCAAATGAATTTAA CAGT TTAAATTCATTAGATATG TTAAATAAACATAAA TERM 2250 1746924 - 1746889 - g 71 -8.6 -2.88822 | opp_overlap 1746887 1746896 1746900, overlap 1746887 1746886 1746896 1746923 CTGTTTATAGAAGCA TACCAAATGAATTTAA CAGT TTAAATTCATTAGATA TGTTAAATAAACATA TERM 2251 1746917 - 1746896 - g 75 -7.5 -3.89971 | opp_overlap 1746896 1746887 1746900, overlap 1746889 1746887 1746886 TAGAAGCATACCAAA TGAATTTAA CAGT TTAAATTCA TTAGATATGTTAAAT CLH_1616 1745481 - 1748084 + | putative ABC transporter-associated permease CLH_1617 1748113 - 1748811 + | two component response regulator TERM 2252 1748873 - 1748891 + G 73 -7.6 -3.74841 | TATTTTATCTGTATT TATTATTC AGG GAATAATA TTTGGAGTTATTTAT TERM 2253 1749081 - 1749058 - g 71 -4 -5.03747 | AAATTGGGGAAAAAA TATTATCTGA TTAT TCATATAATA CAGCATTAAAATATA CLH_1618 1748811 - 1750061 + | two component sensor kinase TERM 2254 1750178 - 1750129 - T 100 -19.1 -4.83615 | opp_overlap 1750130, overlap 1750130 GATTGTTTATAAAAA GTTAAAGTCATTGTTTGCACTTA TTAT TAAGTACAAACAATGACTTTAAT TTTATTCGCTTTTTG TERM 2255 1750130 - 1750177 + T 100 -20.4 -4.79075 | opp_overlap 1750129 1750130 ATTGTTTATAAAAAG TTAAAGTCATTGTTTGCACTTA TTAT TAAGTACAAACAATGACTTTAA TTTTATTCGCTTTTT TERM 2256 1750177 - 1750130 - T 100 -22.6 -3.49687 | opp_overlap 1750130, overlap 1750129 ATTGTTTATAAAAAG TTAAAGTCATTGTTTGCACTTA TTAT TAAGTACAAACAATGACTTTAA TTTTATTCGCTTTTT CLH_1619 1751052 - 1750180 - | putative integral membrane protein TERM 2257 1750425 - 1750445 + g 78 -8.5 -3.76186 | overlap 1750422 ATGATGCTACCATTT TAGTATTAA AAG TTAATACTA TTGATTTTGTAAATA CLH_1620 1751262 - 1751912 + | hypothetical protein TERM 2258 1752088 - 1752127 + T 100 -10.3 -4.9725 | opp_overlap 1752091, overlap 1752091 AGGCGCATAAAATTA AAAGTGCAGTATATAGA TTGATT TTTATATACTGCACTTA TTTTTATGTAAAAAT TERM 2259 1752124 - 1752091 - T 100 -9.8 -4.73108 | opp_overlap 1752088 1752091 CGCATAAAATTAAAA GTGCAGTATATAGA TTGATT TTTATATACTGCAC TTATTTTTATGTAAA TERM 2260 1752091 - 1752124 + T 100 -12 -4.58943 | opp_overlap 1752091, overlap 1752088 CGCATAAAATTAAAA GTGCAGTATATAGA TTGATT TTTATATACTGCAC TTATTTTTATGTAAA CLH_1621 1752575 - 1752201 - | hypothetical protein TERM 2261 1752801 - 1752791 - H 70 -2.6 -5.5074 | TAATTGAATAAAAAA TATA TAC TATA AATACAATAAAACAT CLH_1622 1752927 - 1753565 + | hypothetical protein TERM 2262 1754602 - 1754578 - T 75 -7.9 -3.99374 | opp_overlap 1754574 TGTTATGAAGAATAA GCCTAACCTAA ATT TTAGATTGGGC TAAATATTACTAAAT CLH_1623 1755528 - 1754629 - | transcriptional regulator, LysR family CLH_1624 1755702 - 1756940 + | major facilitator superfamily MFS_1 CLH_1625 1757165 - 1758373 + | acetyltransferase CLH_1626 1758700 - 1759890 + | putative rhoptry protein CLH_1627 1760104 - 1760568 + | hypothetical protein TERM 2263 1760821 - 1760809 - g 72 -4.9 -4.85599 | opp_overlap 1760813 TTTACTGGAGAAAAA GAAAT AAT ATTTC CAGAAGTATTATCAT CLH_1628 1760731 - 1761690 + | hypothetical protein TERM 2264 1761758 - 1761736 - T 100 -12.2 -5.63517 | opp_overlap 1761736 TTTTTAAATAAAAAA TGGATTCAAA TAA TTTGAATCCA TTTTTTTGTATGATT TERM 2265 1761736 - 1761758 + T 100 -12.2 -5.75478 | opp_overlap 1761736 TTTTTAAATAAAAAA TGGATTCAAA TAA TTTGAATCCA TTTTTTTGTATGATT CLH_1629 1762285 - 1761791 - | hypothetical protein CLH_1630 1762423 - 1763157 + | putative TPR repeat-containing protein TERM 2266 1763239 - 1763208 - f 100 -11.8 -5.32699 | opp_overlap 1763208 GTAAAGATTAAAAAA CCTCAATGATACTT ATTT AAGTATTATTGAGG TTTTTTTATAGAATA TERM 2267 1763208 - 1763239 + F 100 -14 -5.626 | opp_overlap 1763208 GTAAAGATTAAAAAA CCTCAATGATACTT ATTT AAGTATTATTGAGG TTTTTTTATAGAATA hcp 1763328 - 1764986 + | hydroxylamine reductase TERM 2268 1765049 - 1765089 + F 84 -8.7 -4.34402 | opp_overlap 1765049 1765073 TGTAGTAATTAGAAA TAAGGATTGTTTTAATA AAATAAG TGTTAAAACAATTCTTA TTTTAATATAAAAAA CLH_1632 1765280 - 1765933 + | HAD-superfamily hydrolase, subfamily IA, variant 3 TERM 2269 1766210 - 1766229 + F 100 -13.6 -4.91046 | AATGTTGATTTTTTA GCCGTGGA GATA TCCACGGC TTTATTTATTTTATA CLH_1633 1766356 - 1768263 + | DNA mismatch repair protein TERM 2270 1768286 - 1768256 - f 84 -5 -5.77677 | opp_overlap 1768261, overlap 1768257 GAAAAGAAGAAAAAA TTAAATAAAATCAA TAA TTAATTTTATTTAG ACAATAAGCTATTTA TERM 2271 1768285 - 1768257 - f 79 -8.5 -4.02946 | opp_overlap 1768261, overlap 1768256 AAAAGAAGAAAAAAT TAAATAAAATCAA TAA TTAATTTTATTTA GACAATAAGCTATTT TERM 2272 1768294 - 1768331 + F 77 -6.5 -4.6526 | opp_overlap 1768294 TTATTTAGACAATAA GCTATTTAGTGATATTA TTTT TAATACTGCTAAATGGC TTTTTACAAATTTAT TERM 2273 1768419 - 1768439 + F 90 -7 -5.35224 | opp_overlap 1768419 ATATGTTAGAATTAA TTAGTTAG GAAAA CTAACTAA TTTTATTTTTATAAG CLH_1634 1768470 - 1768898 + | putative transcriptional regulator CLH_1635 1768948 - 1769973 + | hypothetical protein TERM 2274 1770046 - 1770064 + F 73 -3.2 -5.56263 | overlap 1769996 TATATCTAGTAGAGG GTATTTTA TTT TAGGATAC TTTTTATTTTGTAAT TERM 2275 1770745 - 1770735 - f 72 -4 -5.42605 | opp_overlap 1770735 TTAATAAAAATAAAA TAAC TAA GTTA TTATGTAAGAATAGA CLH_1636 1770863 - 1771978 + | sensory box histidine kinase TERM 2276 1772011 - 1771976 - f 100 -15.8 -3.88498 | gap 1, opp_overlap 1771976 1771979 1771982, overlap 1771979 1771982 CTTTCAGATATTAAA TAATAATAGACCGCACT TTT AG-GCGGTCTATTATTA TTTGGAATATAAATT TERM 2277 1771976 - 1772011 + F 100 -15.8 -3.64371 | gap 1, opp_overlap 1771976 1771979 1771982, overlap 1771979 1771982 CTTTCAGATATTAAA TAATAATAGACCGCACT TTT AG-GCGGTCTATTATTA TTTGGAATATAAATT TERM 2278 1772008 - 1771979 - f 100 -13.1 -4.06993 | gap 1, opp_overlap 1771979 1771976 1771982, overlap 1771976 1771982 TCAGATATTAAATAA TAATAGACCGCACT TTT AG-GCGGTCTATTA TTATTTGGAATATAA TERM 2279 1771979 - 1772008 + F 100 -13.1 -3.95378 | gap 1, opp_overlap 1771976 1771979 1771982, overlap 1771976 1771982 TCAGATATTAAATAA TAATAGACCGCACT TTT AG-GCGGTCTATTA TTATTTGGAATATAA TERM 2280 1771982 - 1772005 + F 95 -10.4 -4.09628 | gap 1, opp_overlap 1771979 1771976 1771982, overlap 1771979 1771976 GATATTAAATAATAA TAGACCGCACT TTT AG-GCGGTCTA TTATTATTTGGAATA TERM 2281 1772005 - 1771982 - f 95 -10.4 -4.1421 | gap 1, opp_overlap 1771982 1771979 1771976, overlap 1771979 1771976 GATATTAAATAATAA TAGACCGCACT TTT AG-GCGGTCTA TTATTATTTGGAATA TERM 2282 1773639 - 1773623 - g 76 -8.1 -3.84712 | opp_overlap 1773622 1773620 1773623 1773625 TAATTCCATATGAAA CAGTAAT GGT ATTACTG ATATTTGTAGGATTA CLH_1637 1772575 - 1774134 + | putative xanthine/uracil/vitamin C permease mch 1774131 - 1775093 + | methenyltetrahydromethanopterin cyclohydrolase TERM 2283 1775395 - 1775378 - g 75 -7.1 -4.14013 | GAAAAGTTTGGAAAA GTTGATA CAGT TATCAAC TGTGCAGGTATTACT CLH_1639 1775156 - 1775887 + | 2,5-dichloro-2,5-cyclohexadiene-1,4-diol dehydrogenase CLH_1640 1775914 - 1776870 + | hypothetical protein TERM 2284 1776883 - 1776915 + F 72 -7.9 -3.59262 | opp_overlap 1776883 1776885 TAAAATAATTAATGA GACAAGTTTACTT AAATAGA ATGTAAACTTGTC TTTAAAAATGTAAAG CLH_1641 1776951 - 1778513 + | putative permease TERM 2285 1778526 - 1778551 + T 100 -9.9 -4.87786 | opp_overlap 1778526 TAAATAATATAAAAA TAAGACTGTTA AATT TGACAGTCTTA TTTTTATGAAGTTAA TERM 2286 1778551 - 1778526 - T 93 -7.7 -5.23765 | opp_overlap 1778526 TAAATAATATAAAAA TAAGACTGTTA AATT TGACAGTCTTA TTTTTATGAAGTTAA CLH_1642 1779694 - 1778555 - | putative transcriptional repressor of the xylose operon TERM 2287 1779629 - 1779645 + g 77 -3.1 -5.67711 | overlap 1779623 TATTTGCTTTTTATA TAATATA GAT TGTATTA TTTTTATTTTATTTA TERM 2288 1779774 - 1779807 + H 76 -8.6 -3.69469 | opp_overlap 1779780, overlap 1779777 1779780 TATAAAGAAATTGTC TAATAATAAATTTT CATTAT AAAATTTATTATTA TCTTTGTTAAAGTAT TERM 2289 1779908 - 1779890 - H 75 -7.6 -3.86874 | TTAAAAATAAATCAA TTGTTTAA CTG TTAAACAA AGGCTGGAGATGTAT TERM 2290 1779921 - 1779943 + H 72 -3.6 -5.41746 | CAAAGGCTGGAGATG TATTTATTAT AAT AAAATAAATA TTTTTTTAGGAAGTT CLH_1643 1780041 - 1780598 + | iron-sulfur flavoprotein TERM 2291 1780609 - 1780643 + T 100 -15.4 -5.04175 | opp_overlap 1780609 GATAATACTCAAAAA TAACAGTATAGAAATT TTA AGTTTCTATACTGTTA TTTTTATATGCTTAA TERM 2292 1780643 - 1780609 - T 100 -13.2 -4.76312 | opp_overlap 1780609 GATAATACTCAAAAA TAACAGTATAGAAATT TTA AGTTTCTATACTGTTA TTTTTATATGCTTAA CLH_1644 1782408 - 1780660 - | iron hydrogenase 1 TERM 2293 1781140 - 1781116 - G 70 -4.9 -4.65168 | opp_overlap 1781120 ACCACATGTTAAAAA GTAAGCAGTTC TAA GAGCCGCTTCC ATAACACCACCAGTA CLH_1645 1784237 - 1782402 - | pyridine nucleotide-disulphide oxidoreductase family protein TERM 2294 1784418 - 1784394 - H 71 -8.1 -3.10925 | opp_overlap 1784393, overlap 1784393 1784390 AAAACTATAAATAAT TTCTCATTATA AGT TATAATGAAAA GTAATATAGAATATA CLH_1646 1784556 - 1784873 + | MazG nucleotide pyrophosphohydrolase domain protein TERM 2295 1785087 - 1785071 - g 73 -8.1 -3.46525 | opp_overlap 1785069 1785068, overlap 1785069 1785063 ATAAAGATAAACAGA TAATGTG GTA CACATTA GCATTTATGGCATTT CLH_1647 1785046 - 1786458 + | amino acid permease family protein TERM 2296 1786503 - 1786470 - T 100 -12.7 -5.21506 | opp_overlap 1786470 ATAAGAATATAAAAA TGTGCTATATACTAA GTTA TTAGTTTATAGCACA TTTTTTATGATAAAA TERM 2297 1786470 - 1786503 + T 100 -12.7 -5.31275 | opp_overlap 1786470 ATAAGAATATAAAAA TGTGCTATATACTAA GTTA TTAGTTTATAGCACA TTTTTTATGATAAAA CLH_1648 1786883 - 1786521 - | hypothetical protein TERM 2298 1787083 - 1787059 - H 73 -8.9 -2.9244 | opp_overlap 1787059 1787058 ATTAAAAGTACTATA TTATATTTTTT TAT AAAAAATATAA GTTTTCCATAAAAAA TERM 2299 1787059 - 1787083 + H 74 -8.9 -3.10597 | opp_overlap 1787059, overlap 1787058 ATTAAAAGTACTATA TTATATTTTTT TAT AAAAAATATAA GTTTTCCATAAAAAA CLH_1649 1787256 - 1789250 + | sensory transduction histidine kinase CLH_1650 1789330 - 1790877 + | sensory transduction histidine kinase TERM 2300 1792372 - 1792357 - g 79 -4.8 -5.51046 | TAAAGATAGAAAAAA TATACT TATT AGTATA AAAGATAATGGCATA CLH_1651 1790912 - 1792672 + | two-component sensor histidine kinase TERM 2301 1792779 - 1792725 - f 81 -10.7 -2.62184 | opp_overlap 1792725, overlap 1792727 1792732 CCTTTTTGTATACTA TATTAAAGTGAAATTATATTA GGTAAATTAAGTA TAATATAATTTCACTTTAATA TTTATGTGTAGTTGA TERM 2302 1792725 - 1792779 + F 95 -10.7 -4.17417 | opp_overlap 1792725 1792727 1792732 CCTTTTTGTATACTA TATTAAAGTGAAATTATATTA GGTAAATTAAGTA TAATATAATTTCACTTTAATA TTTATGTGTAGTTGA TERM 2303 1792777 - 1792727 - f 73 -8.9 -2.85351 | opp_overlap 1792725, overlap 1792725 1792732 TTTTTGTATACTATA TTAAAGTGAAATTATATTA GGTAAATTAAGTA TAATATAATTTCACTTTAA TATTTATGTGTAGTT TERM 2304 1793567 - 1793580 + G 71 -2.5 -5.4505 | opp_overlap 1793567 1793562 TTTAATTCAATAAAA TATAT AGTT ATATA TTTTTTATTACAAGA CLH_1652 1792844 - 1793800 + | hypothetical protein TERM 2305 1793817 - 1793846 + T 100 -8.9 -5.63012 | gap 1, opp_overlap 1793817 AAATTAGAATAAAAA TACAAGAAGATACA ATG TGTAT-TTCTTGTA TTTTTATTTCTTTTT TERM 2306 1793846 - 1793817 - T 100 -8.9 -5.25772 | gap 1, opp_overlap 1793817 AAATTAGAATAAAAA TACAAGAAGATACA ATG TGTAT-TTCTTGTA TTTTTATTTCTTTTT CLH_1653 1794439 - 1793861 - | hypothetical protein TERM 2307 1794798 - 1794788 - g 81 -3.2 -5.8901 | overlap 1794791 AGAGAAAATAAAAAA GCAC AAA ATGC TTTGGGTGATAAATA TERM 2308 1795446 - 1795436 - g 88 -5.4 -5.58074 | CAAGGATTAAAAAAA GCTA TTA TAGC ATTGAAAACTAAATA CLH_1654 1794671 - 1795480 + | Sel1 repeat family TERM 2309 1795488 - 1795533 + F 100 -10.2 -4.81843 | gap 1, opp_overlap 1795492, overlap 1795492 ACGTATAATAAACAA TAAAGCTATATGTAAA-GTAG TAATT TTACTTTTACATATAGCTTTG TTTGTTTTAATTGTT TERM 2310 1795529 - 1795492 - f 85 -8.1 -4.69324 | gap 1, opp_overlap 1795488 1795492 ATAATAAACAATAAA GCTATATGTAAA-GTA GTAATTT TACTTTTACATATAGC TTTGTTTGTTTTAAT TERM 2311 1795492 - 1795529 + F 93 -8.8 -4.88786 | gap 1, opp_overlap 1795492, overlap 1795488 ATAATAAACAATAAA GCTATATGTAAA-GTAG TAATT TTACTTTTACATATAGC TTTGTTTGTTTTAAT CLH_1655 1795862 - 1797418 + | membrane-associated methyl-accepting chemotaxis protein with hamp domain TERM 2312 1797469 - 1797434 - f 100 -15.2 -5.0809 | opp_overlap 1797434 AATAAAGTATAAAAA TAATACTATAAAGATT TTAA AATCTTTATAGTATTA TTTTTTGCTTTCATA TERM 2313 1797434 - 1797469 + F 100 -15.2 -5.40004 | opp_overlap 1797434 AATAAAGTATAAAAA TAATACTATAAAGATT TTAA AATCTTTATAGTATTA TTTTTTGCTTTCATA TERM 2314 1797764 - 1797738 - f 79 -9.8 -2.65264 | opp_overlap 1797735 1797738 1797740 1797743, overlap 1797740 1797743 1797750 1797760 CCATTATTTACATGA TATAATATATAA TAG TTATATATTATA TAGTCTATATAACTA TERM 2315 1797738 - 1797764 + F 79 -9.8 -2.73275 | opp_overlap 1797738 1797740 1797743 1797750 1797760, overlap 1797735 1797740 1797743 CCATTATTTACATGA TATAATATATAA TAG TTATATATTATA TAGTCTATATAACTA TERM 2316 1799240 - 1799254 + G 70 -8.6 -2.66395 | overlap 1799239 AAGAGTTAATGTTAA CTTCTC AAA GAGAAG CTTATGGTGATGGAT TERM 2317 1799421 - 1799407 - g 75 -3.5 -5.52909 | GAATATTTAAAAAAA GGAGA TTCAT TCCCC GATGAATATGAAAAG CLH_1656 1797805 - 1799607 + | oligoendopeptidase F TERM 2318 1799714 - 1799662 - f 100 -13.2 -5.09245 | gap 1, opp_overlap 1799663 1799668 1799713, overlap 1799665 TTAAAAGTATAAAAA TAACAACGCTGTTTTACCACAAAGT TTAA AATTTGTAGTAAAACAGCGTTAT-A TTTATGTTAAATAAT TERM 2319 1799663 - 1799714 + F 95 -10.4 -4.22009 | opp_overlap 1799662 1799665, overlap 1799668 1799713 TAAAAGTATAAAAAT AACAACGCTGTTTTACCACAAAGT TTAA AATTTGTAGTAAAACAGCGTTATA TTTATGTTAAATAAT TERM 2320 1799712 - 1799665 - f 100 -17.4 -4.59919 | opp_overlap 1799663 1799668, overlap 1799662 AAAGTATAAAAATAA CAACGCTGTTTTACCACAAAGT TTAA AATTTGTAGTAAAACAGCGTTA TATTTATGTTAAATA TERM 2321 1799668 - 1799709 + F 100 -14.7 -3.97022 | opp_overlap 1799665 1799662, overlap 1799663 GTATAAAAATAACAA CGCTGTTTTACCACAAAGT TTAA AATTTGTAGTAAAACAGCG TTATATTTATGTTAA CLH_1657 1799771 - 1801144 + | V-type sodium ATP synthase subunit J TERM 2322 1801230 - 1801192 - f 100 -12 -4.55383 | AATTTATAAAAAGAA TAGCTTACAGATTATAAT TTT AATATTATCTGTAAGCTA AAAAACAATATTTAA TERM 2323 1802154 - 1802140 - g 73 -8.6 -2.97392 | overlap 1802137 1802142 TAGATGAAAATATTA GATGTG GAT CACATC CAGAGAGTATTTATT CLH_1658 1801350 - 1802186 + | oxidoreductase, aldo/keto reductase family TERM 2324 1802242 - 1802188 - f 90 -12.1 -3.04646 | gap 1, opp_overlap 1802203, overlap 1802203 AAGGTCATAAATAAT TAAACAGCAAAAAAATAAATTAGTAT TAAT ATACTAATTTATTTTTTTG-TGCTTT TTGTTAAATAAAACT TERM 2325 1802203 - 1802228 + F 100 -9.3 -5.77632 | opp_overlap 1802188 1802203 TAAACAGCAAAAAAA TAAATTAGTAT TAAT ATACTAATTTA TTTTTTTGTGCTTTT TERM 2326 1802228 - 1802203 - f 100 -9.3 -5.66989 | opp_overlap 1802203, overlap 1802188 TAAACAGCAAAAAAA TAAATTAGTAT TAAT ATACTAATTTA TTTTTTTGTGCTTTT TERM 2327 1802478 - 1802453 - f 70 -4.1 -5.22943 | opp_overlap 1802457 1802458, overlap 1802457 1802458 ATTAAATGTAAAAAA TATACTAACCA AAGG TGGTTAATTTA AATGATTGGTAATAG CLH_1659 1802480 - 1803691 + | two-component sensor histidine kinase TERM 2328 1804128 - 1804116 - g 75 -3.5 -5.4182 | AATTATAAAGAAAAA TTAAT TGT ATTAA TGAGTATTTATGATA CLH_1660 1803885 - 1804601 + | transcriptional regulatory protein TERM 2329 1806365 - 1806339 - g 73 -3.1 -5.38951 | AATGCATATAAAAAA CAAATAGAATA TTTTG TATTCCATATG GTTGCTGCAGATAAT CLH_1661 1804845 - 1807256 + | pyruvate formate-lyase CLH_1662 1807320 - 1808252 + | glycyl-radical enzyme activating family protein TERM 2330 1808270 - 1808313 + F 100 -15.6 -4.44915 | opp_overlap 1808273, overlap 1808271 1808273 CCATTTAATTTAATA TAATAGGACTATCTTCAAAG AATT CTTTGAAGATAGTCCTATGC TTTTATAAATCATTG TERM 2331 1808271 - 1808312 + F 100 -19.1 -3.26226 | opp_overlap 1808273, overlap 1808270 1808273 CATTTAATTTAATAT AATAGGACTATCTTCAAAG AATT CTTTGAAGATAGTCCTATG CTTTTATAAATCATT TERM 2332 1808273 - 1808310 + F 100 -21.7 -3.18788 | opp_overlap 1808273, overlap 1808271 1808270 TTTAATTTAATATAA TAGGACTATCTTCAAAG AATT CTTTGAAGATAGTCCTA TGCTTTTATAAATCA TERM 2333 1808310 - 1808273 - f 100 -21.7 -3.71686 | opp_overlap 1808273 1808271 1808270 TTTAATTTAATATAA TAGGACTATCTTCAAAG AATT CTTTGAAGATAGTCCTA TGCTTTTATAAATCA CLH_1663 1808380 - 1808517 + | hypothetical protein TERM 2334 1808606 - 1808575 - f 100 -13.4 -5.25799 | opp_overlap 1808568 1808575 1808577 AAAATAATACAAAAA CATTTACTTTAAAT TACG ATTTAAAGTAAATG TATATAATTGATATT TERM 2335 1808575 - 1808606 + F 95 -13.4 -3.03212 | opp_overlap 1808575, overlap 1808568 1808577 AAAATAATACAAAAA CATTTACTTTAAAT TACG ATTTAAAGTAAATG TATATAATTGATATT TERM 2336 1808577 - 1808604 + F 82 -10.2 -3.06361 | opp_overlap 1808575, overlap 1808575 1808568 AATAATACAAAAACA TTTACTTTAAAT TACG ATTTAAAGTAAA TGTATATAATTGATA TERM 2337 1808693 - 1808656 - f 72 -8.9 -2.72558 | opp_overlap 1808649 1808660, overlap 1808660 1808683 ATAACTTGTTAATTA TAAATTAAATATTGTTA ATTA TAAAAATATTTAATTTA TCAAAGTAAATATAT TERM 2338 1809853 - 1809829 - g 95 -10.9 -4.15841 | TGATGAAACTACAAA TCCAATAACTC AGG AAGTTATTGGA CTAAATACTGAAAAA CLH_1664 1808837 - 1810465 + | 2,3-cyclic-nucleotide 2'phosphodiesterase TERM 2339 1810475 - 1810503 + T 100 -14.9 -5.17744 | opp_overlap 1810475 GCTTAAAAATAAAAA GATGATTCAAAAT TAA ATTTTGAATCATC TTTTTATTAATGTGT TERM 2340 1810503 - 1810475 - T 100 -14.9 -5.61881 | opp_overlap 1810475 GCTTAAAAATAAAAA GATGATTCAAAAT TAA ATTTTGAATCATC TTTTTATTAATGTGT CLH_1665 1810695 - 1810570 - | hypothetical protein CLH_1666 1811113 - 1811673 + | nudix domain protein TERM 2341 1811713 - 1811679 - T 100 -8.9 -5.59357 | opp_overlap 1811679 1811670 1811700, overlap 1811700 ACTATATTAAAAAAA GTGTACTATATAT TACAATAGG ATATATAGTACAC TTTATATCATTCTTA TERM 2342 1811679 - 1811713 + T 86 -9.6 -4.17263 | opp_overlap 1811679 1811700, overlap 1811670 1811700 ACTATATTAAAAAAA GTGTACTATATATT ACAATAG GATATATAGTACAC TTTATATCATTCTTA CLH_1667 1812178 - 1811726 - | putative MutT/nudix family protein TERM 2343 1811850 - 1811863 + g 91 -6.7 -5.41143 | TCATGATCTTTTTCT GTTGG ATTT CCAAC TTTTTTTAAAGAATC CLH_1668 1812416 - 1813030 + | Mn/Fe superoxide dismutase TERM 2344 1813144 - 1813134 - T 73 -5.4 -4.77173 | opp_overlap 1813134 TTTCTATAAAACAAA GAAG GGA CTTC TCATATTATATTTTT CLH_1669 1814293 - 1813187 - | hypothetical protein CLH_1670 1815227 - 1814322 - | hypothetical protein TERM 2345 1814815 - 1814829 + g 74 -2.2 -5.71712 | TTTGTATAACCATAT TTTAAG TTC TTTAAA TTTTTTTCTATGGCA TERM 2346 1815494 - 1815552 + r 100 -21.9 -2.7094 | gap 1, opp_overlap 1815500 1815509, overlap 1815500 1815509 TAATATTATAAACTG CT-TAAATTATATAAATAGACTGAATAT ATAT ATATTCAGTCTATTTATATAATTTACAG ATTCTATCACTACAA TERM 2347 1815545 - 1815500 - R 100 -21.1 -3.60074 | opp_overlap 1815494 1815500 1815509, overlap 1815509 TATAAACTGCTTAAA TTATATAAATAGACTGAATAT ATAT ATATTCAGTCTATTTATATAA TTTACAGATTCTATC TERM 2348 1815500 - 1815545 + r 100 -21.1 -3.63305 | opp_overlap 1815500 1815509, overlap 1815494 1815509 TATAAACTGCTTAAA TTATATAAATAGACTGAATAT ATAT ATATTCAGTCTATTTATATAA TTTACAGATTCTATC TERM 2349 1815536 - 1815509 - R 100 -13 -4.17516 | opp_overlap 1815509 1815500 1815494, overlap 1815500 CTTAAATTATATAAA TAGACTGAATAT ATAT ATATTCAGTCTA TTTATATAATTTACA TERM 2350 1815509 - 1815536 + r 100 -13 -4.17516 | opp_overlap 1815500 1815509, overlap 1815500 1815494 CTTAAATTATATAAA TAGACTGAATAT ATAT ATATTCAGTCTA TTTATATAATTTACA CLH_1671 1817027 - 1815534 - | phytoene dehydrogenase family protein TERM 2351 1816758 - 1816771 + g 70 -6.7 -4.04206 | opp_overlap 1816758 1816760 1816761 ATTATCAGAATAAAA CACTC TATA GAGTG TTTCTATAGGAATAA TERM 2352 1816771 - 1816758 - G 83 -6.7 -4.81814 | opp_overlap 1816758, overlap 1816760 1816761 ATTATCAGAATAAAA CACTC TATA GAGTG TTTCTATAGGAATAA TERM 2353 1816968 - 1816954 - G 76 -7.2 -4.43012 | ACTGTAACATTAAAA CCTTTT GAT AAAAGG CGTGCAGCTACAGAT TERM 2354 1817276 - 1817298 + H 71 -5.6 -4.57209 | opp_overlap 1817293, overlap 1817281 GTTATAATGAGGTAT CATAGTTATG AAA CAAAGCTATG TTTTATAATTGATAT TERM 2355 1817326 - 1817293 - H 100 -11.3 -4.50627 | opp_overlap 1817276 1817281 TAGTTATGAAACAAA GCTATGTTTTATAAT TGAT ATTTTAAAACATAGC AAATAAAAAAAGAAA CLH_1672 1817356 - 1817766 + | hypothetical protein TERM 2356 1817788 - 1817815 + F 86 -5.7 -5.64006 | AGACTTAATATAAAA CACTTAACATT AATATA AATGTTGGGTG TTTTTTTCATTCAAT CLH_1673 1818024 - 1819955 + | ABC transporter ATP-binding protein uup TERM 2357 1820021 - 1820005 - g 70 -5.9 -4.39724 | AAAGGAAAGAAAGAA CCTCTAA TAT TTAAAGG TGATAGAATCGATGT TERM 2358 1820103 - 1820083 - g 70 -8.5 -2.61983 | overlap 1820082 1820078 1820093 AAGCAAATAAGATAT TTTAGAAAA GGA TTTTCTAAA TCTCAGTATATAGAA CLH_1674 1819969 - 1820157 + | hypothetical protein TERM 2359 1823037 - 1823056 + G 70 -6.6 -3.98745 | opp_overlap 1823037 GGTAACTTACTTAAA GAAAATAA CATA TTATTTTC TTATTTGGATGGTTC CLH_1675 1820178 - 1823438 + | SWI/SNF family helicase TERM 2360 1823451 - 1823469 + F 77 -9 -3.31274 | opp_overlap 1823451 TAACATATATAAAAA CTTATGTT TTA AACATAAG TTCAATTGTTACTTC TERM 2361 1823469 - 1823451 - f 100 -9 -5.09685 | opp_overlap 1823451 TAACATATATAAAAA CTTATGTT TTA AACATAAG TTCAATTGTTACTTC TERM 2362 1823568 - 1823603 + F 95 -12.8 -3.52874 | opp_overlap 1823555, overlap 1823566 CATACAATGTCTATT GAGGCAATGTAGTCAA AATT TTGGTTACATTGTCTC TCTTCTTATATAAAA CLH_1676 1823710 - 1824408 + | MgtC/SapB transporter TERM 2363 1824421 - 1824456 + F 90 -12.2 -3.08776 | opp_overlap 1824421, overlap 1824418 1824425 TAGACTTTTTTAAAA TTAATGGGAAATTTAA TTTT TGAAATTTCCCATTAA TAATTTTAAAAAATT TERM 2364 1824456 - 1824421 - f 100 -12.2 -4.09243 | opp_overlap 1824421 1824418 1824425 TAGACTTTTTTAAAA TTAATGGGAAATTTAA TTTT TGAAATTTCCCATTAA TAATTTTAAAAAATT TERM 2365 1824425 - 1824452 + F 74 -8.6 -3.37533 | opp_overlap 1824421, overlap 1824421 1824418 CTTTTTTAAAATTAA TGGGAAATTTAA TTTT TGAAATTTCCCA TTAATAATTTTAAAA TERM 2366 1824475 - 1824496 + F 70 -3.1 -5.42131 | opp_overlap 1824475, overlap 1824481 TTTTAAAAAATTAAA TAATGCTTA AAAA TAAACATTA TTTTTTATATAATTA CLH_1677 1824546 - 1825274 + | glycerophosphoryl diester phosphodiesterase family protein CLH_1678 1825420 - 1826118 + | MgtC/SapB transporter TERM 2367 1826259 - 1826292 + F 71 -5.4 -4.64076 | opp_overlap 1826259 AAATGGTAAAATAAT CTCTGG-GTGGTATCT TAAT AGA-ACCTCACCAGAG TTTTATCATTTCATT CLH_1679 1826497 - 1827300 + | hypothetical protein TERM 2368 1827363 - 1827352 - g 77 -3 -5.59564 | ATAAAGGTAAAAAAA TAAG TATG CTTA CTGCTTATGATTATT panB 1827300 - 1828127 + | 3-methyl-2-oxobutanoate hydroxymethyltransferase panC 1828146 - 1828988 + | pantoate--beta-alanine ligase panD 1829134 - 1829508 + | aspartate 1-decarboxylase TERM 2369 1829581 - 1829610 + F 100 -11.7 -5.27335 | opp_overlap 1829584 AATAATTAACCACTA TAACTGCTTGTTT TATT AAATAAGCAGTTA TTTTTATTTAGCAAC CLH_1683 1829909 - 1830931 + | spore photoproduct lyase TERM 2370 1830938 - 1830961 + F 76 -4.6 -5.34055 | opp_overlap 1830938 1830940 ATTATTTAAAAGAAA GTCTTCCA TTTTATTT TGGAAGGC TTTTTTAATCTTTAT TERM 2371 1831074 - 1831093 + F 78 -6.6 -4.76874 | opp_overlap 1831073, overlap 1831073 1831071 TAAACAATGAATTAC TATTAACA ATAG TGTTAATA TTTTAGTTTTATATT TERM 2372 1833936 - 1833925 - g 76 -4.4 -5.35365 | opp_overlap 1833925 AAAACACAATAAAAA GCAT AAAG ATGC TTCTAATGACAATAT mutS 1831262 - 1834087 + | DNA mismatch repair protein MutS CLH_1685 1834112 - 1834279 + | hypothetical protein TERM 2373 1834298 - 1834282 - f 71 -5.3 -4.56914 | TGATGTAAATTAAAA TATAATA GTT TATTATA AGAGTACTTAAATTC TERM 2374 1834344 - 1834300 - f 100 -13.1 -3.42346 | opp_overlap 1834300 AATAGTTTATTATAA GAGTACTTAAATTCTTCTGAT ATA ATCAGTTGATTTTAAGTACTC TTTTTTATAAAAATT TERM 2375 1834300 - 1834344 + F 100 -13.1 -5.25803 | opp_overlap 1834300 AATAGTTTATTATAA GAGTACTTAAATTCTTCTGAT ATA ATCAGTTGATTTTAAGTACTC TTTTTTATAAAAATT TERM 2376 1834503 - 1834482 - f 82 -2.3 -6.20267 | overlap 1834483 TTAAAAATAAAAAAA CTTTCAATG TAAA CATTGACAA TACATATACGTATAA treP 1834573 - 1835979 + | pts system, trehalose-specific iibc component treC 1836014 - 1837672 + | alpha,alpha-phosphotrehalase treR 1837709 - 1838422 + | trehalose operon repressor TERM 2377 1838488 - 1838453 - f 100 -9.2 -4.92314 | opp_overlap 1838453 ATTAAGTGATAAAAA CTCTTAGGTATTATTT TCAG AAATATAACCTAAGAG TTTTTAATTTGTATT TERM 2378 1838453 - 1838488 + F 100 -9.2 -5.08367 | opp_overlap 1838453 ATTAAGTGATAAAAA CTCTTAGGTATTATTT TCAG AAATATAACCTAAGAG TTTTTAATTTGTATT TERM 2379 1839149 - 1839138 - g 73 -3 -5.5112 | overlap 1839131 TCCAGCAAGAAAAAA GTTT CTTA AAAC AACCTCTAAAGAATC CLH_1689 1838662 - 1840692 + | DNA mismatch repair protein MutL TERM 2380 1841416 - 1841383 - g 80 -3.9 -5.69379 | ATAGAACTAAAAAAA CTTGGATACACTTCA AGTA TGCAGTCTATGCAAG GAATAGGGTATAAAG miaA 1840696 - 1841625 + | tRNA delta(2)-isopentenylpyrophosphate transferase TERM 2381 1841794 - 1841810 + G 70 -5.9 -4.3208 | AATTGTAAAGGGCTT TGACAGT TTT ACTGTTA TTTTAGATTCTGAGG hfq 1841675 - 1841908 + | RNA chaperone Hfq TERM 2382 1841942 - 1841905 - f 100 -14.5 -3.02023 | opp_overlap 1841911 1841915, overlap 1841911 1841915 TGTAGATAATGAAAG CTAAAATAAATAGGCAA TTAA TTGCCTATTTATTTTTG AGGAAATATATTTAT TERM 2383 1841911 - 1841936 + F 100 -12.1 -4.57837 | opp_overlap 1841911 1841905 1841915, overlap 1841915 TAATGAAAGCTAAAA TAAATAGGCAA TTAA TTGCCTATTTA TTTTTGAGGAAATAT TERM 2384 1841936 - 1841911 - f 100 -12.1 -4.39318 | opp_overlap 1841911 1841915, overlap 1841905 1841915 TAATGAAAGCTAAAA TAAATAGGCAA TTAA TTGCCTATTTA TTTTTGAGGAAATAT TERM 2385 1841915 - 1841932 + F 88 -8.5 -4.85782 | opp_overlap 1841911 1841905 1841915, overlap 1841911 GAAAGCTAAAATAAA TAGGCAA TTAA TTGCCTA TTTATTTTTGAGGAA TERM 2386 1841932 - 1841915 - f 88 -8.5 -4.74598 | opp_overlap 1841915 1841911, overlap 1841911 1841905 GAAAGCTAAAATAAA TAGGCAA TTAA TTGCCTA TTTATTTTTGAGGAA TERM 2387 1842416 - 1842402 - g 74 -2.8 -5.60993 | overlap 1842409 TTGCTGATAAAAAAA CTAAAG GCT CATTAG ATGAATATAATATAA TERM 2388 1842552 - 1842534 - g 80 -8.2 -4.2109 | TAATACATATACAAA GAAGCACA GGA TATGCTTC TAGAAAATCTTTCTT CLH_1692 1841984 - 1843273 + | aluminium resistance protein TERM 2389 1843348 - 1843315 - T 100 -14.9 -5.48063 | opp_overlap 1843322 ACTGAACATAAAAAA GCTGAAATACTAAAT TATA ACTTAGTATTTCAGC TAATAAACGTTTCAC TERM 2390 1843434 - 1843384 - T 100 -11.7 -3.93819 | gap 1, opp_overlap 1843388, overlap 1843388 ATTAAAGTATAAGAA TTAATTCAATCCACTAATTTTAAT AAAG ACT-AAATTAGTGGATTGAATTTA ATCGATTAAGTTAGT TERM 2391 1843388 - 1843430 + T 95 -11 -3.79668 | opp_overlap 1843384 1843388 AAGTATAAGAATTAA TTCAATCCACTAATTT TAATAAAGACT AAATTAGTGGATTGAA TTTAATCGATTAAGT TERM 2392 1843430 - 1843388 - T 95 -12.5 -3.59882 | gap 1, opp_overlap 1843388, overlap 1843384 AAGTATAAGAATTAA TTCAATCCACTAATTTTAAT AAAG ACT-AAATTAGTGGATTGAA TTTAATCGATTAAGT lexA 1844050 - 1843445 - | LexA repressor CLH_1694 1844226 - 1844657 + | conserved protein containing Zn-finger domain CLH_1695 1844727 - 1845218 + | putative lipoprotein TERM 2393 1845228 - 1845261 + F 100 -9.1 -5.68438 | overlap 1845223 GTTTAATTTTTTTCG GATGAAATAGCTTTT TATT ATAAGTTATTTCATC TTTTTTATTTACTCA CLH_1696 1845401 - 1845931 + | putative lipoprotein TERM 2394 1846019 - 1845987 - T 100 -8 -5.56673 | opp_overlap 1845987 ATTGATAATAAAAAA TCTCTATTATGAAT GTTAA ATTTATAATAGAGA TTTTTTATAAATAGG TERM 2395 1845987 - 1846019 + T 100 -10.2 -5.28176 | opp_overlap 1845987 ATTGATAATAAAAAA TCTCTATTATGAAT GTTAA ATTTATAATAGAGA TTTTTTATAAATAGG CLH_1697 1847034 - 1846045 - | site-specific recombinase, phage integrase family TERM 2396 1847151 - 1847120 - H 100 -16.2 -3.35867 | opp_overlap 1847110 TGAATTTTTAATCAA TTATTTCGGGAAAT GTAT ATTTCCCGAAATAA AATTAAACGATTTTT TERM 2397 1847234 - 1847244 + H 76 -2.6 -5.93252 | opp_overlap 1847234, overlap 1847223 1847229 TTATTAATTTTAAAT TATA ATT TATA TTTTTTATTTTTAAC TERM 2398 1847565 - 1847603 + H 100 -12.9 -4.62336 | opp_overlap 1847565 AAATTTGGACAAAAA TTGTAGATAAATATATA ATTAA TATGTATTTATCTACAA TTTTTCACATGAAAT TERM 2399 1847603 - 1847565 - H 100 -10.7 -4.86033 | opp_overlap 1847565 AAATTTGGACAAAAA TTGTAGATAAATATATA ATTAA TATGTATTTATCTACAA TTTTTCACATGAAAT TERM 2400 1847946 - 1847933 - g 72 -3.7 -5.24989 | overlap 1847935 TTAGACATGAAAAAA GCTGC AAAA GCTGC ATCTGAAAAAAGTAT ybaK 1847705 - 1848184 + | YbaK/ebsC protein TERM 2401 1848332 - 1848279 - T 100 -13.3 -3.53841 | opp_overlap 1848280, overlap 1848280 TAAACAAACTTAGAA GGTGCCATTTTTGCGTGTATAGAAC ATAT GTTCTGCACGCGAAAAAATGGCACT TTCATAAAAATATTA TERM 2402 1848280 - 1848331 + T 100 -19 -3.74519 | opp_overlap 1848279 1848280 AAACAAACTTAGAAG GTGCCATTTTTGCGTGTATAGAAC ATAT GTTCTGCACGCGAAAAAATGGCAC TTTCATAAAAATATT TERM 2403 1848331 - 1848280 - T 100 -16.8 -2.7122 | opp_overlap 1848280, overlap 1848279 AAACAAACTTAGAAG GTGCCATTTTTGCGTGTATAGAAC ATAT GTTCTGCACGCGAAAAAATGGCAC TTTCATAAAAATATT TERM 2404 1848427 - 1848397 - T 100 -13.4 -4.37092 | opp_overlap 1848397 ATCTCTTGTAGAAAA CCCCTACTAAGCAT CAA ATACTTTGTAGGGG TTTTTATTATATAGT TERM 2405 1848397 - 1848427 + T 100 -11.2 -5.25699 | opp_overlap 1848397 ATCTCTTGTAGAAAA CCCCTACTAAGCAT CAA ATACTTTGTAGGGG TTTTTATTATATAGT TERM 2406 1848490 - 1848455 - T 83 -7.8 -4.57581 | opp_overlap 1848451 1848455 AGTCCAAATAATAAA CTGTATTAAGATTATT ATTT ATTAATCCCAATACAG TTTGTCTAATAATAC miaB 1849877 - 1848507 - | tRNA-I(6)A37 thiotransferase enzyme MiaB TERM 2407 1849997 - 1849976 - R 95 -8.1 -5.2422 | opp_overlap 1849976 AAGTATAGCAAAAAA TCCATCCAA GTTA TTGGATAGA TTAATCAACATTATC CLH_1700 1850326 - 1850114 - | putative transcriptional regulator TERM 2408 1850476 - 1850436 - R 100 -13.6 -5.16133 | gap 1, opp_overlap 1850436 1850440, overlap 1850440 ATTATAATATAAAAA GAAAGGGTAGCAAATAAGA TTTC TCCTATCTGCTACCCTT-C GTTTTCTAATTTTAT TERM 2409 1850436 - 1850477 + r 74 -5.9 -4.70046 | opp_overlap 1850436 1850440, overlap 1850440 ATTATAATATAAAAA GAAAGGGTAGCAAATAAGA TTTC TCCTATCTGCTACCCTTCG TTTTCTAATTTTATG TERM 2410 1850473 - 1850440 - R 100 -15.5 -5.05037 | opp_overlap 1850436 1850440, overlap 1850436 TAATATAAAAAGAAA GGGTAGCAAATAAGA TTTC TCCTATCTGCTACCC TTCGTTTTCTAATTT TERM 2411 1850440 - 1850473 + r 95 -11.1 -3.79813 | opp_overlap 1850440 1850436, overlap 1850436 TAATATAAAAAGAAA GGGTAGCAAATAAGA TTTC TCCTATCTGCTACCC TTCGTTTTCTAATTT TERM 2412 1850725 - 1850686 - R 76 -6 -4.86822 | opp_overlap 1850689, overlap 1850689 AATTATATAACAAAA GAAGTAGTAGTATATA AAGCTTAA TATATACCACTACTTT TTAATTGTTCAGGAT TERM 2413 1850689 - 1850722 + r 75 -5.5 -4.99435 | opp_overlap 1850686 1850689 TATATAACAAAAGAA GTAGTAGTATATA AAGCTTAA TATATACCACTAC TTTTTAATTGTTCAG TERM 2414 1850722 - 1850689 - R 81 -7.7 -4.51787 | opp_overlap 1850689, overlap 1850686 TATATAACAAAAGAA GTAGTAGTATATA AAGCTTAA TATATACCACTAC TTTTTAATTGTTCAG CLH_1701 1851624 - 1850836 - | putative phage lysozyme TERM 2415 1851677 - 1851659 - R 90 -6 -5.8901 | opp_overlap 1851659 ATATAAAAGAAAAAA GGTAGC TAAAAAT GCTACC TAAATTACTCTTTAA CLH_1702 1851855 - 1851682 - | hypothetical protein CLH_1703 1852068 - 1851868 - | UviB homologous protein TERM 2416 1852124 - 1852102 - R 76 -6.3 -4.84311 | opp_overlap 1852110 TTTTATATAAGAAAA GACACCTAC TTAAC GTAAGTGCC TTTAATAAACTTTAT CLH_1704 1853145 - 1852141 - | putative phage surface protein CLH_1705 1854715 - 1853192 - | putative protein containing cell adhesion domain TERM 2417 1854678 - 1854661 - G 70 -4.9 -4.66264 | TAAAATTTCCAAAAA TAATAGC AAAA GCTACTA CAAATATTATACCTA TERM 2418 1855150 - 1855137 - R 82 -5.3 -5.49234 | ATATTCAATAAAAAA GACTA TTTC TAGTC CTGATTTATTGCCTG CLH_1706 1855385 - 1855188 - | hypothetical protein CLH_1707 1855736 - 1855398 - | hypothetical protein CLH_1708 1857161 - 1855752 - | putative phage tail fiber protein TERM 2419 1856818 - 1856836 + g 74 -8.2 -3.54459 | overlap 1856815 1856832 TTACTACTTCCTTCA CTTGCAAG TGG CTTGTAAG TTTCAGCAAGCTTAC CLH_1709 1857823 - 1857161 - | phage tail protein TERM 2420 1857352 - 1857364 + g 75 -5.5 -4.96501 | ATATATTTAATACAT CGGTC CAT GATCG TTTGTTTTTATAAGC CLH_1710 1858974 - 1857823 - | hypothetical protein TERM 2421 1858625 - 1858644 + g 72 -7.2 -3.922 | opp_overlap 1858623 1858621 1858625 TTAACTTTAAACATA GTTATACC ATCT GGTGTAAC TTTAGTTCCAGCTTT CLH_1711 1859287 - 1858967 - | putative GPW/gp25 family protein CLH_1712 1859832 - 1859290 - | hypothetical protein TERM 2422 1859411 - 1859421 + g 70 -5.4 -4.61482 | overlap 1859411 TTTTTAGATTCACTC GAAG TCC CTTC TTCTTTTTTAACACC TERM 2423 1859724 - 1859702 - G 70 -7.8 -3.49102 | opp_overlap 1859702 ATACCTTTTATATAA GTAGATGG TTTACTT CCATCTAC TTCTTGGTCTTCTAT TERM 2424 1859702 - 1859724 + g 73 -7.8 -3.84873 | opp_overlap 1859702 ATACCTTTTATATAA GTAGATGG TTTACTT CCATCTAC TTCTTGGTCTTCTAT CLH_1713 1860037 - 1859837 - | putative phage baseplate assembly protein V CLH_1714 1860945 - 1860037 - | hypothetical protein TERM 2425 1860880 - 1860858 - G 84 -9.2 -4.06502 | overlap 1860860 TATCTGCAAATGAAA TAGCAAGACT ATC AGCCTTGCCA CCCATATTATCAATT TERM 2426 1860878 - 1860860 - G 84 -9.6 -3.62354 | overlap 1860858 TCTGCAAATGAAATA GCAAGACT ATC AGCCTTGC CACCCATATTATCAA CLH_1715 1861173 - 1860961 - | hypothetical protein CLH_1716 1863364 - 1861166 - | TMP repeat family TERM 2427 1863140 - 1863176 + g 100 -16.7 -4.96996 | opp_overlap 1863148, overlap 1863141 TGATCCGGTTTTTTT AGCAGCAATAGCAACAG CAC CTGTAGCTATTGCTGCC TTTATTTTATTTGAA TERM 2428 1863141 - 1863175 + g 100 -20.2 -3.56571 | opp_overlap 1863148, overlap 1863140 GATCCGGTTTTTTTA GCAGCAATAGCAACAG CAC CTGTAGCTATTGCTGC CTTTATTTTATTTGA TERM 2429 1863168 - 1863148 - G 71 -8.3 -3.21099 | opp_overlap 1863141 1863140 TTTTTTTAGCAGCAA TAGCAACAG CAC CTGTAGCTA TTGCTGCCTTTATTT TERM 2430 1863312 - 1863300 - G 83 -7.7 -4.66953 | opp_overlap 1863300 GCAACATTTGAAAAA GCCTT TTG AAGGC TTGGATTTAATATTC TERM 2431 1863300 - 1863312 + g 70 -7.7 -3.3323 | opp_overlap 1863300 GCAACATTTGAAAAA GCCTT TTG AAGGC TTGGATTTAATATTC CLH_1717 1863853 - 1863530 - | hypothetical protein TERM 2432 1863904 - 1863875 - R 93 -11.7 -3.17075 | opp_overlap 1863875 TCTCCTCCAATTTAA TAGACTAGAATAA TAAA TTATCCTAGTCTA TTTTCTTAATTTTAA TERM 2433 1863875 - 1863904 + r 95 -9.5 -4.89562 | opp_overlap 1863875 TCTCCTCCAATTTAA TAGACTAGAATAA TAAA TTATCCTAGTCTA TTTTCTTAATTTTAA CLH_1718 1864444 - 1863923 - | putative phage major tail tube protein CLH_1719 1865880 - 1864444 - | hypothetical protein CLH_1720 1866417 - 1865893 - | hypothetical protein CLH_1721 1866999 - 1866427 - | hypothetical protein CLH_1722 1867310 - 1866999 - | hypothetical protein CLH_1723 1867527 - 1867300 - | hypothetical protein TERM 2434 1867554 - 1867536 - R 100 -8.9 -5.20333 | opp_overlap 1867535 TACTCATAATAAAAA GGTGTTC TTAAT GAACACC CTCCTATAACACCTT CLH_1724 1868604 - 1867558 - | hypothetical protein TERM 2435 1867792 - 1867839 + g 74 -8 -3.60035 | gap 1, overlap 1867785 1867779 GCCTTCTGGAACCAT TGGTTCTGTAGTTGGTTTTTCAG GGT TTGTAAAATCATCTA-AGAACCA TTCATTATATTTATA CLH_1725 1868967 - 1868620 - | hypothetical protein CLH_1726 1870100 - 1868967 - | peptidase S14, ClpP TERM 2436 1869293 - 1869303 + g 73 -3.2 -5.39221 | CTTCATTGTAAACAT CAGG ATA CTTG TTTTTTAATTCTTGT TERM 2437 1869417 - 1869373 - G 73 -4.5 -5.1287 | gap 1, opp_overlap 1869349 1869373 TTTATATTTAAAAAA GAATCATTCTGAATATTAGC TGTATT GCTAA-ATCCTGATTGATTC TTTTCTATACCTATT CLH_1727 1871739 - 1870180 - | phage portal protein, lambda family CLH_1728 1871983 - 1871750 - | hypothetical protein CLH_1729 1873111 - 1871999 - | phage terminase GpA CLH_1730 1873819 - 1873313 - | phage terminase GpA CLH_1731 1874390 - 1873797 - | hypothetical protein CLH_1732 1875013 - 1874657 - | hypothetical protein CLH_1733 1875782 - 1875198 - | site-specific recombinase, phage integrase family CLH_1734 1876006 - 1875779 - | hypothetical protein TERM 2438 1875820 - 1875841 + g 75 -6 -4.69656 | CTCCATGTTTTCTTT TGTATGAA TCATGT TTCATACA TTTTCTTAAATCATT TERM 2439 1876059 - 1876038 - R 83 -3.7 -5.96894 | ATTTAAATAAAAAAA GAATCCCCA GTGA TGAAGACTC TTTAAAATATTATCC CLH_1735 1876432 - 1876061 - | gp2 TERM 2440 1876503 - 1876482 - R 90 -6.7 -5.74086 | opp_overlap 1876482 AAATTAAATAAAAAA TACCTATAA TATT CTATAGGTA TTTTAATTAGGGGAT TERM 2441 1876482 - 1876503 + r 72 -6 -4.41047 | opp_overlap 1876482 AAATTAAATAAAAAA TACCTATA ATATTC TATAGGTA TTTTAATTAGGGGAT CLH_1736 1876685 - 1876560 - | hypothetical protein TERM 2442 1876776 - 1876790 + r 76 -2.9 -5.95946 | opp_overlap 1876776 CCTATATCCACCAAA TCTTA CATTA TAAGA TTTTTTTCTTCTTAC CLH_1737 1876904 - 1876755 - | hypothetical protein TERM 2443 1877132 - 1877091 - R 87 -11.3 -3.08638 | gap 1, opp_overlap 1877091 1877097, overlap 1877097 ATAAGTAAATTAAAC TAAAAATACCGTA-TATTCA TTA TGAATAATACGGTATTCTCA TTTAGATCTTTTTAT TERM 2444 1877126 - 1877097 - R 100 -10.3 -5.05577 | gap 1, opp_overlap 1877097 1877091, overlap 1877091 AAATTAAACTAAAAA TACCGTA-TATTCA TTA TGAATAATACGGTA TTCTCATTTAGATCT TERM 2445 1877097 - 1877126 + r 91 -10.3 -3.62011 | gap 1, opp_overlap 1877091 1877097, overlap 1877091 AAATTAAACTAAAAA TACCGTA-TATTCA TTA TGAATAATACGGTA TTCTCATTTAGATCT CLH_1738 1878337 - 1877144 - | thermostable carboxypeptidase 2 TERM 2446 1878016 - 1878056 + g 70 -7.8 -3.4052 | gap 1, opp_overlap 1878016 1878013 CTGCTCCTAAAAGCA TTGCTGTATGCATATCATG TCCA CATGA-ATGCATACAACCA TTAGTTGAGTTAAAA TERM 2447 1878056 - 1878016 - G 81 -10 -3.08032 | gap 1, opp_overlap 1878016, overlap 1878013 CTGCTCCTAAAAGCA TTGCTGTATGCATATCATG TCCA CATGA-ATGCATACAACCA TTAGTTGAGTTAAAA CLH_1739 1878950 - 1878561 - | hypothetical protein TERM 2448 1879044 - 1879062 + r 100 -8.9 -5.9362 | TCTCTAATTGTGGAA GGTGTTC ATCAC GAACACC TTTTTTTATATTTTG CLH_1740 1879292 - 1879101 - | hypothetical protein TERM 2449 1879242 - 1879263 + g 74 -8.9 -2.95223 | overlap 1879244 GCAAAATAATTTTTT GATAAATGA CTTT TCATTTATC TCTGTAATACCATTA TERM 2450 1879523 - 1879489 - R 82 -4.6 -5.77853 | opp_overlap 1879489 AATTGCGAAAAAAAA TACCGCGATT-CATTT AAATA AAATGTAAT-GCGGTA TTATATCATCATAGT CLH_1741 1880067 - 1879561 - | hypothetical protein TERM 2451 1880328 - 1880299 - R 80 -5.9 -5.26875 | gap 1 TTGCGAACTAAAAAA TACCGCA-CATTCA TTT TGAATAATACGGTA TTTACATAAATTTAG CLH_1742 1880636 - 1880388 - | spore coat protein F CLH_1743 1880834 - 1880649 - | hypothetical protein TERM 2452 1882194 - 1882217 + r 70 -7.6 -3.37522 | opp_overlap 1882194 ACTTTTATTAACAAG TTCGTAATAT TTAC ATATTGCGAA TTACTTAGATAAAAT TERM 2453 1882241 - 1882261 + r 70 -7.7 -3.40401 | opp_overlap 1882240, overlap 1882240 ATAAAATTACTAATT CAAATTTTC TAT GAGAATTTG CTTTTATAATTTTAT CLH_1746 1882403 - 1882218 - | hypothetical protein CLH_1747 1882635 - 1882423 - | hypothetical protein CLH_1748 1883020 - 1882754 - | hypothetical protein CLH_1749 1883218 - 1883544 + | hypothetical protein TERM 2454 1883831 - 1883849 + T 71 -7.4 -3.89614 | TCTTTTTAGTTTATT GGGGGA TTTCTTC TCCCCC TTTATAAAAATTGCA CLH_1750 1884069 - 1883914 - | hypothetical protein CLH_1751 1884233 - 1884066 - | hypothetical protein CLH_1752 1885176 - 1884235 - | phage protein TERM 2455 1885151 - 1885161 + g 77 -5.4 -5.00851 | TTTGCTGGAATTATT GCAT AGT ATGC TTTTATTTCATTCAT CLH_1753 1886437 - 1885289 - | ParB protein CLH_1754 1887177 - 1886422 - | sporulation initiation inhibitor protein soj TERM 2456 1887233 - 1887212 - R 72 -8.8 -2.6187 | opp_overlap 1887216, overlap 1887216 ATAATTTATAATGGA GATACGGA TTGCAG TCCGTATC ATAAAATTAGAATTC TERM 2457 1887262 - 1887281 + r 100 -9.4 -5.45802 | opp_overlap 1887265 TCAAAAAATACTACT GAACCTTT ACTA AAAGGTTC TTTTTATTTTCCAGA CLH_1755 1887563 - 1887390 - | ribosomal protein L5 CLH_1756 1888068 - 1887592 - | hypothetical protein CLH_1757 1888381 - 1888190 - | hypothetical protein TERM 2458 1888313 - 1888326 + g 70 -5.3 -4.4846 | TTTTCCCTTATATCC TAGCA CTTT TGCTA TTTCTTCTTGAGTTC CLH_1758 1888558 - 1888962 + | transcriptional regulator TERM 2459 1888995 - 1889022 + F 77 -6.5 -4.67353 | gap 1, opp_overlap 1889000, overlap 1889000 GTTAAAAATAATGCC TATAAGGTGTTC GTAAA GAACACC-TATA TTTTTAACTACATAC TERM 2460 1889018 - 1889000 - f 77 -8.9 -3.35349 | opp_overlap 1888995 1889000 AAATAATGCCTATAA GGTGTTC GTAAA GAACACC TATATTTTTAACTAC TERM 2461 1889000 - 1889018 + F 79 -8.9 -3.56042 | opp_overlap 1889000, overlap 1888995 AAATAATGCCTATAA GGTGTTC GTAAA GAACACC TATATTTTTAACTAC CLH_1759 1889089 - 1889634 + | hypothetical protein TERM 2462 1889653 - 1889680 + F 77 -6.5 -4.65895 | gap 1, opp_overlap 1889658, overlap 1889658 GTTAAAAATAATGCC TATAAGGTGTTC GTAAA GAACACC-TATA TTTTTAACTACACAC TERM 2463 1889658 - 1889676 + F 79 -8.9 -3.56042 | opp_overlap 1889658, overlap 1889653 AAATAATGCCTATAA GGTGTTC GTAAA GAACACC TATATTTTTAACTAC TERM 2464 1889676 - 1889658 - f 77 -8.9 -3.35349 | opp_overlap 1889658 1889653 AAATAATGCCTATAA GGTGTTC GTAAA GAACACC TATATTTTTAACTAC TERM 2465 1889697 - 1889719 + F 89 -9.4 -4.27316 | opp_overlap 1889703, overlap 1889689 TTTTAACTACACACT GTAATATTTT ATC AAAATATTAC TTTTACATTAAAAAA CLH_1760 1889748 - 1889921 + | hypothetical protein TERM 2466 1890138 - 1890089 - T 100 -8.9 -5.52096 | opp_overlap 1890094, overlap 1890094 AAATTTAATAAAAAA TAAAATGTTGTATCAGATCTAAT TTTT ATTTAATCGGATACAACATTTTT ATTATTTAATAATTC TERM 2467 1890094 - 1890133 + T 87 -6.6 -5.39905 | opp_overlap 1890094 1890089 TAATAAAAAATAAAA TGTTGTATCAGATCTAAT TTTT ATTTAATCGGATACAACA TTTTTATTATTTAAT TERM 2468 1890133 - 1890094 - T 100 -8.8 -5.55001 | opp_overlap 1890094, overlap 1890089 TAATAAAAAATAAAA TGTTGTATCAGATCTAAT TTTT ATTTAATCGGATACAACA TTTTTATTATTTAAT CLH_1761 1892179 - 1890140 - | hypothetical protein TERM 2469 1892657 - 1892641 - g 77 -3.1 -5.72053 | opp_overlap 1892651 GAATTAAATAAAAAA TCAAAAA TAC TTTTTAA TAAGATTGAAAATTT CLH_1762 1892299 - 1893660 + | putative modification methylase TERM 2470 1893649 - 1893686 + F 78 -9.5 -3.00525 | opp_overlap 1893654, overlap 1893654 TATATTTTAATATTG AAAAAGGTTTAAAGATA TTTG TATTTTTAAACCTTTTA TATAATTTAAAGAAA TERM 2471 1893681 - 1893654 - f 81 -7.2 -4.74706 | opp_overlap 1893654 1893649 TTTAATATTGAAAAA GGTTTAAAGATA TTTG TATTTTTAAACC TTTTATATAATTTAA TERM 2472 1893654 - 1893681 + F 93 -9.4 -4.6468 | opp_overlap 1893654, overlap 1893649 TTTAATATTGAAAAA GGTTTAAAGATA TTTG TATTTTTAAACC TTTTATATAATTTAA TERM 2473 1895375 - 1895431 + G 91 -9.9 -4.32951 | opp_overlap 1895394 1895397, overlap 1895394 TGGCATAATAAATAA TTTTATATATAAAGAAAAAGAGTGCTA ATT TAGCATTCTTTTATTATATATATTAAA TTTTGAATATTGTTT CLH_1763 1893711 - 1895402 + | putative resolvase TERM 2474 1895412 - 1895394 - T 83 -6 -5.4433 | opp_overlap 1895394 1895375, overlap 1895397 ATATATAAAGAAAAA GAGTGCTA ATT TAGCATTC TTTTATTATATATAT TERM 2475 1895394 - 1895412 + T 88 -8.2 -4.88495 | opp_overlap 1895394 1895397, overlap 1895375 ATATATAAAGAAAAA GAGTGCTA ATT TAGCATTC TTTTATTATATATAT CLH_1764 1895583 - 1895452 - | hypothetical protein TERM 2476 1895788 - 1895769 - R 100 -9.4 -5.06451 | opp_overlap 1895767 1895765 1895757 1895769 TACCATGTTAAAAAA GATCTAGA ATAC TCTAGATC TCTATTATACACTGT TERM 2477 1895769 - 1895788 + r 80 -9.4 -3.18386 | opp_overlap 1895769, overlap 1895767 1895765 1895757 TACCATGTTAAAAAA GATCTAGA ATAC TCTAGATC TCTATTATACACTGT CLH_1765 1896278 - 1895997 - | hypothetical protein CLH_1766 1897166 - 1896306 - | acetyltransferase TERM 2478 1897252 - 1897308 + r 95 -10.5 -4.17914 | opp_overlap 1897241 1897245 1897266, overlap 1897253 1897266 GAAGTTAACTTTTTA AGTAAAAGTAAAAAGAACCCCTATATA AAT TATATTGAGGTTCTTTTTATTTATACA TGTTTTTATTAAATA TERM 2479 1897253 - 1897307 + r 100 -14 -3.09664 | opp_overlap 1897241 1897245 1897266, overlap 1897252 1897266 AAGTTAACTTTTTAA GTAAAAGTAAAAAGAACCCCTATATA AAT TATATTGAGGTTCTTTTTATTTATAC ATGTTTTTATTAAAT TERM 2480 1897266 - 1897294 + r 100 -7.5 -5.38958 | opp_overlap 1897266, overlap 1897253 1897252 AAGTAAAAGTAAAAA GAACCCCTATATA AAT TATATTGAGGTTC TTTTTATTTATACAT TERM 2481 1897294 - 1897266 - R 100 -9.7 -5.13016 | opp_overlap 1897266 1897253 1897252 AAGTAAAAGTAAAAA GAACCCCTATATA AAT TATATTGAGGTTC TTTTTATTTATACAT CLH_1767 1899224 - 1897317 - | 4-hydroxy-3-methylbut-2-enyl diphosphate reductase cmk 1899906 - 1899253 - | cytidylate kinase CLH_1769 1901224 - 1900004 - | hypothetical protein TERM 2482 1900340 - 1900352 + g 70 -4.9 -4.6856 | opp_overlap 1900340 TTTTTGTGGTAATAA TTCAT TTA ATGAA TTTTTAAAATCTTTA CLH_1770 1901594 - 1901367 - | hypothetical protein TERM 2483 1901635 - 1901615 - R 75 -8.5 -3.51934 | opp_overlap 1901618, overlap 1901618 TTCTCCTTATAAATA TAATAGAAA GTA TTTCTATTA CTCACATATTTTTTA CLH_1771 1902301 - 1901654 - | pentapeptide repeat protein TERM 2484 1902449 - 1902413 - R 87 -6.8 -5.36441 | opp_overlap 1902408 1902413 GTTTCACATAAAAAA CAAATAAAGCAAAATG CCTTT CAGTCTACTTTATTTG TTTTCATATTATATA cytX 1903668 - 1902466 - | probable hydroxymethylpyrimidine transporter CytX TERM 2485 1903724 - 1903693 - R 83 -6.7 -5.26119 | opp_overlap 1903721, overlap 1903695 1903719 CCCCTAAAAATAAAA TATGGGATATACC AATAAA GATATATCCCATT AAAAACATTTAATGT TERM 2486 1903722 - 1903695 - R 89 -9.3 -4.25502 | opp_overlap 1903721, overlap 1903693 1903719 CCTAAAAATAAAATA TGGGATATACC AATAAA GATATATCCCA TTAAAAACATTTAAT CLH_1773 1905042 - 1904011 - | hypothetical protein TERM 2487 1904416 - 1904428 + g 77 -4.9 -5.2015 | AATTTCTTGCGCCCT TGATA AAT TATCA TTTTTGTATTCTTCC CLH_1774 1905243 - 1905064 - | hypothetical protein TERM 2488 1905378 - 1905346 - R 77 -6.5 -4.62803 | opp_overlap 1905346 TCAAATAATAAGAAA TACTCCATATTATGT AAT AAATAACATAGAGTA TCTTTTTGTTTAATT CLH_1775 1906584 - 1905388 - | hypothetical protein TERM 2489 1907378 - 1907402 + r 73 -8.8 -2.83082 | opp_overlap 1907380 1907383, overlap 1907368 1907380 1907383 TAAAATTTTTTTATA CATAAGTTTT CTATA AAAACTTATG TATAATGCCATTTTT TERM 2490 1907505 - 1907472 - R 100 -10.7 -4.4595 | gap 1, opp_overlap 1907478 1907480 1907481, overlap 1907465 1907480 TTATAAAATTTAAAA TAAAAAAAGTGTTGCA AAA TGCAACA-TTTTTTTA AATAAATACTGTTGT TERM 2491 1907478 - 1907534 + r 100 -13.4 -4.89054 | opp_overlap 1907472 1907480, overlap 1907480 1907481 1907527 AATTTAAAATAAAAA AAGTGTTGCAAAATGCAACATTTTTT TAAAT AAATACTGTTGTATTTTGCAACACTG TTGTTTTTTTATACA TERM 2492 1907532 - 1907480 - R 100 -13.8 -6.09196 | opp_overlap 1907480 1907478 1907481 1907527, overlap 1907472 TTTAAAATAAAAAAA GTGTTGCAAAATGCAACATTTTTT TAAAT AAATACTGTTGTATTTTGCAACAC TGTTGTTTTTTTATA TERM 2493 1907480 - 1907532 + r 100 -16 -4.04185 | opp_overlap 1907472 1907480, overlap 1907478 1907481 1907527 TTTAAAATAAAAAAA GTGTTGCAAAATGCAACATTTTTT TAAAT AAATACTGTTGTATTTTGCAACAC TGTTGTTTTTTTATA TERM 2494 1907481 - 1907497 + r 100 -9.5 -5.47821 | opp_overlap 1907472 1907480, overlap 1907480 1907478 TTAAAATAAAAAAAG TGTTGCA AAA TGCAACA TTTTTTTAAATAAAT TERM 2495 1907527 - 1907537 + r 82 -5.4 -5.626 | opp_overlap 1907480, overlap 1907480 1907478 1907536 TACTGTTGTATTTTG CAAC ACT GTTG TTTTTTTATACAATA CLH_1778 1909521 - 1907623 - | signal-transduction and transcriptional-control protein TERM 2496 1909714 - 1909740 + r 95 -12.5 -3.79747 | opp_overlap 1909714 AATACACAGCAAAAA GAGCAAACATT TTACC AATGTTTGCTC TTTCCTAGTAACTGA TERM 2497 1909740 - 1909714 - R 100 -12.5 -4.87037 | opp_overlap 1909714 AATACACAGCAAAAA GAGCAAACATT TTACC AATGTTTGCTC TTTCCTAGTAACTGA TERM 2498 1909955 - 1909977 + r 75 -8 -3.98649 | opp_overlap 1909949 1909961, overlap 1909949 1909950 1909953 1909961 TTACAATAGTTTTTT TAAAAATTTA AAT TAAATTTTTA TTATTCTATATTATG CLH_1779 1910181 - 1909978 - | hypothetical protein CLH_1780 1911108 - 1910503 - | nudix-family protein CLH_1781 1911841 - 1911350 - | ErfK/YbiS/YcfS/YnhG family CLH_1782 1912701 - 1911928 - | putative PHP domain CLH_1783 1912874 - 1913398 + | hypothetical protein TERM 2499 1913436 - 1913470 + T 95 -11.7 -3.55203 | opp_overlap 1913436 TTATTACTATGAAAA TTATAGGCTAACTTT AAATA AAAGTCAGCCTATAA TTTAAAAACACTTTT TERM 2500 1913470 - 1913436 - T 100 -13.9 -4.32034 | opp_overlap 1913436 TTATTACTATGAAAA TTATAGGCTAACTTT AAATA AAAGTCAGCCTATAA TTTAAAAACACTTTT CLH_1784 1914106 - 1913465 - | hypothetical protein CLH_1785 1914522 - 1915178 + | putative lipoprotein TERM 2501 1915233 - 1915203 - T 77 -7.7 -4.17263 | gap 1, opp_overlap 1915208, overlap 1915205 1915208 TAATAAGTAGATAAA TATTAGGCTGTTGC TTTT GCAACAGCCTT-TA GTATATAATAAATTA TERM 2502 1915232 - 1915205 - T 76 -8.4 -3.66719 | opp_overlap 1915208, overlap 1915203 1915208 ATAAGTAGATAAATA TTAGGCTGTTGC TTTT GCAACAGCCTTT AGTATATAATAAATT TERM 2503 1915229 - 1915208 - T 100 -14.5 -2.92896 | opp_overlap 1915208, overlap 1915205 1915203 AGTAGATAAATATTA GGCTGTTGC TTTT GCAACAGCC TTTAGTATATAATAA TERM 2504 1915208 - 1915229 + T 100 -14.5 -3.89956 | opp_overlap 1915205 1915203 1915208 AGTAGATAAATATTA GGCTGTTGC TTTT GCAACAGCC TTTAGTATATAATAA CLH_1786 1916553 - 1915411 - | FliB family protein TERM 2505 1916727 - 1916704 - R 100 -9.8 -5.85737 | opp_overlap 1916704, overlap 1916717 ATATTAACAAAAAAA CTAAGTTTAT AAAT ATAAACTTAG TTTTTACGCTATAAC TERM 2506 1916704 - 1916727 + r 100 -9.8 -4.64766 | opp_overlap 1916704 1916717 ATATTAACAAAAAAA CTAAGTTTAT AAAT ATAAACTTAG TTTTTACGCTATAAC CLH_1787 1917077 - 1916766 - | hypothetical protein TERM 2507 1916812 - 1916798 - G 72 -5.8 -4.53607 | opp_overlap 1916798 1916797 AAAATGATGATAAAA TTAGTA CAG TACTAA CTATTCTACTTAAAT TERM 2508 1917215 - 1917249 + r 73 -6.6 -4.26463 | opp_overlap 1917215 AATTCATATTAAGAA GTACCTAGCAATGA ACTACAA TTATTACTAGGTAC TTTCTGTTAATATAT CLH_1788 1917939 - 1917313 - | hypothetical protein CLH_1789 1918794 - 1917943 - | ABC transporter, ATP-binding protein CLH_1790 1919174 - 1918800 - | GntR-family transcriptional regulator TERM 2509 1919327 - 1919365 + r 91 -10.6 -3.61646 | opp_overlap 1919327 1919333, overlap 1919333 CCATAGTTTTAGATA TAAAAAGTCACCTATA TAAGTAT TATAGGTGACTTTTAA TTAATTTATAAAATT TERM 2510 1919365 - 1919327 - R 82 -10.6 -2.89191 | opp_overlap 1919327 1919333, overlap 1919333 CCATAGTTTTAGATA TAAAAAGTCACCTATA TAAGTAT TATAGGTGACTTTTAA TTAATTTATAAAATT TERM 2511 1919333 - 1919359 + r 93 -9.6 -4.53774 | opp_overlap 1919333 1919327, overlap 1919327 TTTTAGATATAAAAA GTCACCTATA TAAGTAT TATAGGTGAC TTTTAATTAATTTAT TERM 2512 1919359 - 1919333 - R 100 -9.6 -5.03994 | opp_overlap 1919327 1919333, overlap 1919327 TTTTAGATATAAAAA GTCACCTATA TAAGTAT TATAGGTGAC TTTTAATTAATTTAT CLH_1791 1919628 - 1919371 - | hypothetical protein CLH_1792 1920324 - 1919845 - | putative iron-dependent repressor CLH_1793 1920478 - 1920729 + | hypothetical protein CLH_1794 1920804 - 1922954 + | ferrous iron transport protein B TERM 2513 1923087 - 1923032 - f 82 -10.1 -2.97365 | gap 1, opp_overlap 1923032 1923031 1923074, overlap 1923034 AATCATTAATAAGTA TAGTCACATTTCCAGCTTGTCTCAAT TTTAT ATTGGAACAAGCT-GAAATAGGACTA TACTTATTTTAGTTT TERM 2514 1923085 - 1923034 - f 71 -8.3 -3.03203 | gap 1, opp_overlap 1923032 1923031 1923074, overlap 1923032 TCATTAATAAGTATA GTCACATTTCCAGCTTGTCTCAAT TTTAT ATTGGAACAAGCT-GAAATAGGAC TATACTTATTTTAGT TERM 2515 1924404 - 1924387 - g 70 -6.3 -4.20516 | GTGGCATTGAAGAAA CTTCAGC CTCT ACTGAAG AAATCAATGCTGTTG CLH_1795 1923480 - 1925177 + | methyl-accepting chemotaxis protein TERM 2516 1925191 - 1925229 + T 84 -4.9 -5.69473 | gap 1, opp_overlap 1925191 1925203 AAATATGCATAAAAA GATATATCAAG-ATGTTA GTAA TAACAAATTTGATATATC TTTTTTTATACTCTA CLH_1796 1926060 - 1925242 - | hypothetical protein CLH_1797 1927569 - 1926163 - | two-component sensor histidine kinase TERM 2517 1926635 - 1926663 + g 74 -6.1 -4.45187 | GCATTATTTTTTAAC CTTGTAGATAAGT TAA GTTCATCTACAAG TTCTTTTATATATTT TERM 2518 1927097 - 1927115 + g 76 -9 -3.11256 | opp_overlap 1927100, overlap 1927095 1927100 ATAATTGTATCCATA GAATAACT TAC AGTTATTC TCTCTACTTTGTTAT CLH_1798 1928284 - 1927571 - | regulatory protein VanR TERM 2519 1927633 - 1927650 + g 71 -2.7 -5.48063 | overlap 1927629 GAATATATTTAGGAT TAGATGA GTCC TCTTCTA TTTTTTCTCTTAGCT TERM 2520 1928161 - 1928190 + g 70 -8 -2.98169 | opp_overlap 1928160 1928159 1928163, overlap 1928163 TTACCCTATTAAACT CAGCTAAACCTT CCTTTA AAGTTTTAGCTG TATATACATTATTGA TERM 2521 1928314 - 1928324 + r 70 -4 -5.243 | TTTCATTTATTTTTA TTGT TCG ACAA TTTTTTCATAATTTA CLH_1799 1929153 - 1928380 - | putative ABC transporter, permease protein CLH_1800 1930046 - 1929159 - | ABC transporter, ATP-binding protein CLH_1801 1931087 - 1930062 - | hypothetical protein TERM 2522 1931184 - 1931212 + r 95 -10.5 -4.19678 | opp_overlap 1931184 1931195 AATGCTAACCTTAAA TAGACCTTAAATA ATT TAATTAAGGTCTA TTTATTGAAATCTCA TERM 2523 1931212 - 1931184 - R 91 -10.5 -3.66921 | opp_overlap 1931184, overlap 1931195 AATGCTAACCTTAAA TAGACCTTAAATA ATT TAATTAAGGTCTA TTTATTGAAATCTCA TERM 2524 1931299 - 1931262 - R 100 -8.8 -6.28401 | opp_overlap 1931262 TAAAAAACAAAAAAA TACTCATTAAATAC ATAAATTGCA GTATTTAATGAGTA TTTGAAGTTAATTTC TERM 2525 1931262 - 1931299 + r 79 -8.8 -3.70505 | opp_overlap 1931262 TAAAAAACAAAAAAA TACTCATTAAATAC ATAAATTGCA GTATTTAATGAGTA TTTGAAGTTAATTTC CLH_1802 1931983 - 1931369 - | superoxide dismutase (Mn) CLH_1803 1932784 - 1932233 - | hypothetical protein TERM 2526 1932951 - 1932965 + r 73 -7.2 -4.13341 | overlap 1932947 CAATATACAGTGATT CATTAG AAT CTAATG TTTAATTTAATATGT TERM 2527 1933015 - 1932992 - R 72 -8.4 -3.28791 | opp_overlap 1932992 1932995, overlap 1932995 ATGTTTGCGTTAGAA TAACAAATAT CTAG ATATTTGTTA TTTAAAGATTTGCTT TERM 2528 1932992 - 1933015 + r 75 -8.4 -3.65084 | opp_overlap 1932992 1932995, overlap 1932995 ATGTTTGCGTTAGAA TAACAAATAT CTAG ATATTTGTTA TTTAAAGATTTGCTT TERM 2529 1933039 - 1933061 + r 100 -10.7 -5.33331 | TTTGCTTAAGATTGG GCTATTGGA AATCC TCCAATAGC TTTTTCTTGTATTTG CLH_1804 1933540 - 1933421 - | hypothetical protein TERM 2530 1933575 - 1933594 + r 95 -12.2 -3.3907 | GATTCGTATACCTCA GACCAAGG TTTG CCTTGGTC TTCCTTCAGATTTAA TERM 2531 1933658 - 1933640 - R 71 -7.4 -3.85817 | ACTTGCCGTTATAAA CGGTTGCA CTA TCCAACCG TAATGGATTTTTACC TERM 2532 1933719 - 1933708 - R 75 -5.8 -5.03994 | overlap 1933712 GGGCACACACAAAAA GGCA TTCT TGCC TTAAACAAGAAACAC trpB 1934970 - 1933753 - | tryptophan synthase, beta subunit lexA 1936592 - 1935051 - | LexA repressor TERM 2533 1936825 - 1936837 + r 70 -3.5 -5.41746 | TATTAAATACTTTCT TATAA AAT TTATA TTTTTTTAACAAATT phnA 1937171 - 1936833 - | alkylphosphonate utilization operon protein PhnA CLH_1808 1938160 - 1937477 - | cyclic nucleotide-binding domain protein CLH_1809 1938438 - 1938968 + | acetyltransferase, gnat family TERM 2534 1939017 - 1938991 - T 90 -11 -3.14126 | opp_overlap 1938986 1938985 TGATAAACTTTAATA GGTAGTCTAATT TTA ATTTAGACTACC TAGAACTATATATTT CLH_1810 1940816 - 1939116 - | pyridine nucleotide-disulphide oxidoreductase family protein CLH_1811 1941221 - 1940901 - | rhodanesen domain protein TERM 2535 1941531 - 1941501 - R 76 -2 -5.85011 | opp_overlap 1941524 TAAAAAGTAAAAAAA CTCCCTTAGATA TTTTGTG TATCTAAAAAAG TTTTTATTTGATATT CLH_1812 1942174 - 1941587 - | hypothetical protein TERM 2536 1942545 - 1942513 - R 91 -7.2 -5.56264 | opp_overlap 1942513 TGTAAATAGAAAAAA CCTATAAAATAGAC TTGCT ATCTACTCTATAGG TTGAATTTTTTATAT CLH_1813 1943030 - 1942614 - | transcriptional regulator CLH_1814 1944521 - 1943382 - | acyl-coa dehydrogenase, short-chain specific CLH_1815 1946254 - 1944701 - | propionate CoA-transferase TERM 2537 1945320 - 1945336 + g 71 -8.1 -3.29593 | opp_overlap 1945331, overlap 1945319 1945331 TCATTAATACCTTCT TCATTAG CAA CTAATGA TATTACTTCTGGAAT CLH_1816 1947101 - 1946325 - | 3-hydroxybutyryl-CoA dehydratase TERM 2538 1947274 - 1947242 - R 76 -9.5 -2.77013 | opp_overlap 1947227 1947242, overlap 1947241 1947245 TAGTTTGTCAACAAG TAATTTGTATATAAA CTA TTTCTATACAAATTA TTTTTTATAAAGTTA TERM 2539 1947242 - 1947274 + r 100 -9.5 -5.27923 | opp_overlap 1947241 1947242 1947245, overlap 1947227 TAGTTTGTCAACAAG TAATTTGTATATAAA CTA TTTCTATACAAATTA TTTTTTATAAAGTTA TERM 2540 1947446 - 1947419 - R 100 -10.8 -6.22802 | opp_overlap 1947419 1947422 1947443 CTGCATAAAAAAAAA TAAGATAGACAT CAAC ATGTCCATCTTA TTTGATATATTTTTT TERM 2541 1947419 - 1947446 + r 79 -8.6 -4.04355 | opp_overlap 1947419, overlap 1947422 1947443 CTGCATAAAAAAAAA TAAGATAGACAT CAAC ATGTCCATCTTA TTTGATATATTTTTT CLH_1817 1948323 - 1947496 - | methyl-accepting chemotaxis protein TERM 2542 1948576 - 1948627 + r 78 -7.7 -4.2602 | gap 2, opp_overlap 1948590, overlap 1948578 1948590 1948614 ATCTCTTTATAATTT CATGT-A-GATTTAAAGGGGCTTGA TATT TCAAGCCCCTTTAAATAGTCACATA TTATTTATTAATATA TERM 2543 1948578 - 1948625 + r 91 -10.3 -3.71448 | gap 2, opp_overlap 1948590, overlap 1948576 1948590 1948614 CTCTTTATAATTTCA TGT-A-GATTTAAAGGGGCTTGA TATT TCAAGCCCCTTTAAATAGTCACA TATTATTTATTAATA TERM 2544 1948611 - 1948590 - R 100 -14.5 -3.71873 | opp_overlap 1948590 1948578 1948576 TCATGTAGATTTAAA GGGGCTTGA TATT TCAAGCCCC TTTAAATAGTCACAT TERM 2545 1948590 - 1948611 + r 100 -14.5 -3.68529 | opp_overlap 1948590, overlap 1948578 1948576 TCATGTAGATTTAAA GGGGCTTGA TATT TCAAGCCCC TTTAAATAGTCACAT CLH_1818 1949256 - 1948747 - | rubrerythrin family protein TERM 2546 1949371 - 1949329 - R 87 -10.2 -3.38786 | opp_overlap 1949329 1949331, overlap 1949331 1949336 TACACTTAATACCAA TATTAAAGCCAATCTAAAAA TTA CTCTTAGATTGACTTTAATT ATTTTATATTTAAGT TERM 2547 1949331 - 1949369 + r 81 -7.7 -4.49132 | opp_overlap 1949331 1949329 1949336, overlap 1949329 CACTTAATACCAATA TTAAAGCCAATCTAAAA ATTAC TCTTAGATTGACTTTAA TTATTTTATATTTAA TERM 2548 1949369 - 1949331 - R 95 -12.8 -3.25787 | opp_overlap 1949329 1949331, overlap 1949329 1949336 CACTTAATACCAATA TTAAAGCCAATCTAAAAA TTA CTCTTAGATTGACTTTAA TTATTTTATATTTAA TERM 2549 1949364 - 1949336 - R 78 -8.3 -3.96696 | opp_overlap 1949331 1949329, overlap 1949331 1949329 AATACCAATATTAAA GCCAATCTAAAAA TTA CTCTTAGATTGAC TTTAATTATTTTATA CLH_1819 1950008 - 1949448 - | O-acetyltransferase family protein CLH_1820 1950176 - 1951051 + | transcriptional regulator, AraC family TERM 2550 1951078 - 1951035 - T 100 -18.6 -2.9632 | opp_overlap 1951036 1951041, overlap 1951041 AAACTCCGAAAGAAT TCAAAACAAGGCTTTAAATT ATAT AATTTAAAGCCTTGTTTTGT TCCTAAAAATAAGAA TERM 2551 1951036 - 1951077 + T 100 -22.1 -3.15544 | opp_overlap 1951035 1951041, overlap 1951041 AACTCCGAAAGAATT CAAAACAAGGCTTTAAATT ATAT AATTTAAAGCCTTGTTTTG TTCCTAAAAATAAGA TERM 2552 1951072 - 1951041 - T 100 -16.2 -4.39407 | opp_overlap 1951036 1951041, overlap 1951035 CGAAAGAATTCAAAA CAAGGCTTTAAATT ATAT AATTTAAAGCCTTG TTTTGTTCCTAAAAA TERM 2553 1951041 - 1951072 + T 100 -16.2 -4.71426 | opp_overlap 1951041 1951035, overlap 1951036 CGAAAGAATTCAAAA CAAGGCTTTAAATT ATAT AATTTAAAGCCTTG TTTTGTTCCTAAAAA CLH_1821 1951340 - 1951131 - | hypothetical protein TERM 2554 1951942 - 1951965 + H 93 -6.8 -5.8901 | TAATTAAGTATTTAT CTCTATGC CTTTTTTT GCATAGAG TTTTTTATTTTGTGT TERM 2555 1952027 - 1952055 + H 93 -9.9 -4.11039 | opp_overlap 1952027 1952032, overlap 1952032 ATATTAATAAAAATT TAAAATTCATAAT CAA ATTATGAATTTTG TTATTTACTTAATAT TERM 2556 1952050 - 1952032 - H 81 -7.6 -4.52505 | opp_overlap 1952027 1952032, overlap 1952027 AATAAAAATTTAAAA TTCATAAT CAA ATTATGAA TTTTGTTATTTACTT TERM 2557 1952032 - 1952050 + H 90 -7.6 -5.03961 | opp_overlap 1952032 1952027, overlap 1952027 AATAAAAATTTAAAA TTCATAAT CAA ATTATGAA TTTTGTTATTTACTT CLH_1822 1952091 - 1952339 + | hypothetical protein CLH_1823 1952406 - 1953824 + | thiamine biosynthesis protein ThiH TERM 2558 1953959 - 1953983 + T 95 -10.8 -4.12748 | overlap 1953957 AGGATTTGCAGATTT GGCTGTTGGA ACTCC TCCAATAGCC TCTTTTTGTATCGTA TERM 2559 1954335 - 1954316 - T 93 -12.2 -3.12668 | opp_overlap 1954312 1954316 GATTCGTATACCTAA GACCAAGG TTTG CCTTGGTC TTCCTTCTGATTGAA TERM 2560 1954316 - 1954335 + T 95 -12.2 -3.5002 | opp_overlap 1954316, overlap 1954312 GATTCGTATACCTAA GACCAAGG TTTG CCTTGGTC TTCCTTCTGATTGAA TERM 2561 1954478 - 1954454 - T 93 -7.3 -5.69473 | opp_overlap 1954454 CACACCACAAAAAAA GTAGCTATATT TTA AATATACCTAC TTTTTATACATTTGC TERM 2562 1954454 - 1954478 + T 83 -7.3 -4.94992 | opp_overlap 1954454 CACACCACAAAAAAA GTAGCTATATT TTA AATATACCTAC TTTTTATACATTTGC CLH_1824 1954715 - 1954533 - | hypothetical protein TERM 2563 1954891 - 1954913 + H 83 -6.5 -5.17576 | opp_overlap 1954893 1954907 ATTATAAAACTTATA TATTTTATC ATAAA GATAAAATA TTTTTTAAATTCATA TERM 2564 1955976 - 1955966 - g 80 -5.4 -5.22137 | AATTACAAAAGAAAA CTCT GTA AGAG CCAGTGAGCTTATGA TERM 2565 1956544 - 1956567 + G 93 -11.2 -3.21747 | ATGCTGATAACTTCT TCTCTTTACT TGAT AGTAAAGAGA TTGCTGGTAGCCTAA CLH_1825 1955250 - 1956818 + | heme-binding protein A TERM 2566 1956834 - 1956866 + F 78 -8.5 -3.97088 | opp_overlap 1956828, overlap 1956837 1956840 AATCTAAAGTAAAAT TTTTAGGGTTCCGAT TTT ATCGGGGCCTTATAA TTTAATATTATAAAA TERM 2567 1956837 - 1956863 + F 82 -10.2 -3.0364 | opp_overlap 1956828, overlap 1956834 1956840 CTAAAGTAAAATTTT TAGGGTTCCGAT TTT ATCGGGGCCTTA TAATTTAATATTATA TERM 2568 1956840 - 1956860 + F 83 -9.7 -3.64523 | overlap 1956837 1956834 AAGTAAAATTTTTAG GGTTCCGAT TTT ATCGGGGCC TTATAATTTAATATT CLH_1826 1956895 - 1957899 + | dipeptide transport system permease protein DppB CLH_1827 1957921 - 1958829 + | glutathione transport system permease protein GsiD TERM 2569 1959048 - 1959035 - g 76 -3.9 -5.54338 | opp_overlap 1959035 CAAGTAAAACAAAAA TATCT GGTG AGATA TTATTTAAATCAGAA CLH_1828 1958845 - 1959819 + | oligopeptide transport ATP-binding protein AppD TERM 2570 1959861 - 1959879 + G 77 -5.2 -5.00884 | CTTAAAAAAATATTT TCCTGTTG ATT CGTCAGGA TTTTTTCAAAAGCCT CLH_1829 1959820 - 1960797 + | oligopeptide transport ATP-binding protein AppF CLH_1830 1960999 - 1961361 + | integral membrane protein TERM 2571 1961414 - 1961357 - T 100 -13.9 -3.18452 | gap 1, opp_overlap 1961359 1961362 1961366, overlap 1961359 1961362 1961366 TTGGCAAAGAAATTA TATAAGAAATAGGACATGCGTAAA-CGT AAT ATGATTTATGCATGTCCTATTTCTTATT ATTTACTTCTAACTT TERM 2572 1961412 - 1961359 - T 100 -16.5 -3.14807 | gap 1, opp_overlap 1961359 1961362 1961366, overlap 1961357 1961362 1961366 GGCAAAGAAATTATA TAAGAAATAGGACATGCGTAAA-CGT AAT ATGATTTATGCATGTCCTATTTCTTA TTATTTACTTCTAAC TERM 2573 1961359 - 1961412 + T 100 -20.9 -4.12296 | gap 1, opp_overlap 1961357 1961359 1961362 1961366, overlap 1961362 1961366 GGCAAAGAAATTATA TAAGAAATAGGACATGCGTAAA-CGT AAT ATGATTTATGCATGTCCTATTTCTTA TTATTTACTTCTAAC TERM 2574 1961362 - 1961409 + T 100 -18.2 -4.16787 | gap 1, opp_overlap 1961359 1961357 1961362 1961366, overlap 1961359 1961366 AAAGAAATTATATAA GAAATAGGACATGCGTAAA-CGT AAT ATGATTTATGCATGTCCTATTTC TTATTATTTACTTCT TERM 2575 1961409 - 1961362 - T 100 -13.8 -3.69408 | gap 1, opp_overlap 1961362 1961359 1961366, overlap 1961359 1961357 1961366 AAAGAAATTATATAA GAAATAGGACATGCGTAAA-CGT AAT ATGATTTATGCATGTCCTATTTC TTATTATTTACTTCT TERM 2576 1961366 - 1961405 + T 100 -13.2 -4.62803 | gap 1, opp_overlap 1961362 1961359 1961357 1961366, overlap 1961362 1961359 AAATTATATAAGAAA TAGGACATGCGTAAA-CGT AAT ATGATTTATGCATGTCCTA TTTCTTATTATTTAC TERM 2577 1961405 - 1961366 - T 86 -8.8 -4.43624 | gap 1, opp_overlap 1961366 1961362 1961359, overlap 1961362 1961359 1961357 AAATTATATAAGAAA TAGGACATGCGTAAA-CGT AAT ATGATTTATGCATGTCCTA TTTCTTATTATTTAC CLH_1831 1962066 - 1961413 - | deoxyguanosIne kinase CLH_1832 1962987 - 1962226 - | GdmH CLH_1833 1963766 - 1963254 - | hypothetical protein TERM 2578 1964186 - 1964152 - R 93 -9.3 -4.49556 | opp_overlap 1964152 CCTCCACTAAAGAAA GCTAGTAAACTTGGG ACTTG CCCTTGCTTACTAGC TTTTTAATTTTACAC TERM 2579 1964152 - 1964186 + r 83 -7.1 -5.0925 | opp_overlap 1964152 CCTCCACTAAAGAAA GCTAGTAAACTTGGG ACTTG CCCTTGCTTACTAGC TTTTTAATTTTACAC CLH_1835 1964705 - 1964271 - | hypothetical protein TERM 2580 1964853 - 1964884 + r 100 -13.2 -3.37499 | opp_overlap 1964841 TATTTACTTTTTTAA CTCTGTTTCTCTTA TAAT TTAGAGAAACAGAG TTAATTACAATATTG TERM 2581 1964958 - 1964924 - R 100 -14.6 -2.84878 | opp_overlap 1964929, overlap 1964929 CTTTGTAAGCTAAAG CAAAATAAGCAGATGA ATA TCATCTGCTTATTTTC ATAAATTAATAATTT TERM 2582 1964929 - 1964953 + r 100 -14.5 -4.31379 | opp_overlap 1964924 1964929 TAAGCTAAAGCAAAA TAAGCAGATGA ATA TCATCTGCTTA TTTTCATAAATTAAT TERM 2583 1964953 - 1964929 - R 100 -14.5 -4.5852 | opp_overlap 1964929, overlap 1964924 TAAGCTAAAGCAAAA TAAGCAGATGA ATA TCATCTGCTTA TTTTCATAAATTAAT CLH_1836 1966283 - 1964976 - | Na+/H+ antiporter TERM 2584 1966434 - 1966405 - R 100 -8.7 -5.4148 | opp_overlap 1966405 1966410, overlap 1966410 TAAAGAATTAAAAAA TAAAAGCTTCACC CAAT AGTGAAGCTTTAA ATATTCTCATACTAT TERM 2585 1966429 - 1966410 - R 100 -8.6 -5.47846 | opp_overlap 1966410 1966405, overlap 1966405 AATTAAAAAATAAAA GCTTCACC CAAT AGTGAAGC TTTAAATATTCTCAT TERM 2586 1966410 - 1966429 + r 73 -7.9 -3.79473 | opp_overlap 1966405 1966410, overlap 1966405 AATTAAAAAATAAAA GCTTCAC CCAATA GTGAAGC TTTAAATATTCTCAT TERM 2587 1967044 - 1967027 - R 80 -3.5 -5.84381 | gap 1, opp_overlap 1967028 1967030, overlap 1967030 TGACCAACAAAAAAA GAACCTAT AAA ATAGGT-C TTTTTTTTAAGTGTC TERM 2588 1967028 - 1967044 + r 83 -3.7 -5.83822 | opp_overlap 1967027 1967030, overlap 1967030 GACCAACAAAAAAAG AACCTAT AAA ATAGGTC TTTTTTTTAAGTGTC TERM 2589 1967030 - 1967042 + r 72 -6.3 -4.5536 | opp_overlap 1967027 1967030, overlap 1967028 CCAACAAAAAAAGAA CCTAT AAA ATAGG TCTTTTTTTTAAGTG TERM 2590 1967042 - 1967030 - R 78 -6.3 -4.96435 | opp_overlap 1967030 1967028, overlap 1967027 CCAACAAAAAAAGAA CCTAT AAA ATAGG TCTTTTTTTTAAGTG CLH_1837 1969328 - 1967106 - | sensor histidine kinase CLH_1838 1970019 - 1969312 - | regulatory protein VanR TERM 2591 1970373 - 1970343 - R 100 -10.6 -5.20781 | opp_overlap 1970343 GAGCATAAAATAAAA TGCATAGTATGTAA AAA TAACATACCATGCA TTGATACTATATTAA TERM 2592 1970343 - 1970373 + r 72 -8.4 -3.28003 | opp_overlap 1970343 GAGCATAAAATAAAA TGCATAGTATGTAA AAA TAACATACCATGCA TTGATACTATATTAA CLH_1839 1970677 - 1970405 - | hypothetical protein TERM 2593 1970435 - 1970449 + g 76 -7.2 -4.33203 | ATCTATTAAATTATT GAACTT TAA AAGTTC TTCTTTGTTATATTC CLH_1840 1971168 - 1970767 - | hypothetical protein CLH_1841 1971339 - 1971494 + | hypothetical protein CLH_1842 1972218 - 1971694 - | hypothetical protein CLH_1843 1972357 - 1973556 + | dhha1 domain protein CLH_1844 1974301 - 1973753 - | ethanolamine utilization protein EutM CLH_1845 1975651 - 1974326 - | ethanolamine utilization Fe-S center protein eut CLH_1846 1977162 - 1975669 - | ethanolamine utilization protein EutE CLH_1847 1977453 - 1977181 - | ethanolamine utilization protein EutN CLH_1848 1978311 - 1977463 - | putative phosphopantothenate--cysteine ligase CLH_1849 1979143 - 1978322 - | ethanolamine utilization protein EutJ TERM 2594 1978532 - 1978543 + g 81 -3 -5.75538 | opp_overlap 1978532, overlap 1978526 AACCGGTTTGATAAG GATA AAAT TATC TTTTTCTTTTTTAGG TERM 2595 1978982 - 1978994 + g 77 -7.7 -4.24149 | overlap 1978976 TGCTGGATATGATGC TCCAG CTA CTGGA TTGTTATTTTCGTCA CLH_1850 1979802 - 1979146 - | propanediol utilization protein CLH_1851 1980106 - 1979828 - | propanediol utilization protein PduA CLH_1852 1980489 - 1980211 - | propanediol utilization protein PduA CLH_1853 1981005 - 1980505 - | putative propanediol utilization protein TERM 2596 1980926 - 1980939 + g 74 -8.1 -3.66784 | TTAGATGATTTCACA GCAGC ATCA GCTGC TTCTATTCCAGCTAC CLH_1854 1981893 - 1981069 - | propanediol utilization protein PduB CLH_1855 1983408 - 1982245 - | alcohol dehydrogenase, iron-containing CLH_1856 1984257 - 1983952 - | hypothetical protein TERM 2597 1984391 - 1984378 - H 70 -3.9 -5.26316 | opp_overlap 1984387, overlap 1984387 TTATTGCATAAAAAA TTTCA ACAT TGAAA ATAATACTTTCATTT TERM 2598 1984733 - 1984721 - g 75 -3.5 -5.52986 | ATTTGATGAAAAAAA TAATT TAA AATTA ATAAGACGACTTGAT CLH_1857 1984530 - 1984844 + | hypothetical protein TERM 2599 1984905 - 1984873 - T 93 -9.5 -4.63527 | opp_overlap 1984876 GTATTACGCTAAAAA TAAGCAATAAATA ACTATTA TATTTATTGCTTA CATTCCCCTTAGAAC TERM 2600 1984909 - 1984946 + T 100 -10.1 -5.65513 | ATTTATTGCTTACAT TCCCCTTAGAACATA CACCACAC TATATTCTAAGGGGA TTTTTTTACTTACTA CLH_1858 1986331 - 1984952 - | sodium:dicarboxylate symporter family protein TERM 2601 1985914 - 1985934 + g 73 -8.3 -3.4252 | opp_overlap 1985913 TCCCTACAAAAATTC CTACCATAG CTG CAATGGTAG TTGTACTAAGTAAAA TERM 2602 1986752 - 1986721 - R 86 -9 -4.52857 | gap 1, opp_overlap 1986720 1986716 1986722, overlap 1986724 ATTTTCTATATAAAA TA-AGCGATACTAAC TTG ATTAGTATCGCTATA AATTAATTTTTTAAA TERM 2603 1986722 - 1986750 + r 72 -9 -2.69912 | opp_overlap 1986721 1986724, overlap 1986720 1986716 TTTTCTATATAAAAT AAGCGATACTAA CTTGA TTAGTATCGCTA TAAATTAATTTTTTA TERM 2604 1986748 - 1986724 - R 100 -12.3 -4.38141 | opp_overlap 1986722 1986720 1986716, overlap 1986721 TTCTATATAAAATAA GCGATACTAAC TTG ATTAGTATCGC TATAAATTAATTTTT CLH_1859 1986996 - 1986763 - | hypothetical protein TERM 2605 1987202 - 1987187 - g 82 -2.6 -5.9873 | TTATGATAAAAAAAA GAAACA TTGC TATTTC AATACTTCTATCTTT CLH_1860 1987174 - 1987515 + | hypothetical protein CLH_1861 1989710 - 1987752 - | tetracycline resistance protein TetP, contain GTP-ase domain TERM 2606 1989960 - 1989913 - R 79 -8.8 -3.52668 | gap 1, opp_overlap 1989921 1989923, overlap 1989900 1989921 AATTCACTTATACAA TAAATAAAGACTTGTCCTAATGC TAT ACATTAAGGCAAGCCTTT-TTTA AATCTAAGGTATCTG TERM 2607 1989953 - 1989921 - R 88 -8.5 -4.76087 | opp_overlap 1989921 1989923, overlap 1989913 TATACAATAAATAAA GACTTGTCCTAATGC TAT ACATTAAGGCAAGCC TTTTTTAAATCTAAG TERM 2608 1989921 - 1989953 + r 78 -5.6 -5.1287 | opp_overlap 1989921 1989913, overlap 1989923 TATACAATAAATAAA GACTTGTCCTAATG CTATA CATTAAGGCAAGCC TTTTTTAAATCTAAG CLH_1862 1991119 - 1990004 - | lysophospholipase l2 pldb, hydrolase of alpha/beta superfamily TERM 2609 1991031 - 1991059 + g 76 -9.1 -3.14051 | opp_overlap 1991020 1991042 1991047, overlap 1991029 GCAATTTGATTTTGA TTTACTCCAAATA TTA TATTTAGAGTAAA TATTAATAAAAATAA TERM 2610 1991189 - 1991156 - R 70 -7 -3.66803 | TTGTAATATCTGAAA TTATAGATACACTG TTATTC CAATATATCTATAA GCCATTTATTACACT CLH_1863 1991511 - 1991170 - | hypothetical protein xth 1992298 - 1991543 - | exodeoxyribonuclease III TERM 2611 1992517 - 1992568 + r 75 -3.9 -5.50925 | opp_overlap 1992521 1992525, overlap 1992518 1992519 1992525 1992557 TAAAGTATTCTTTTT AATATAAATTAGGGAGTGTTCAA AAAAAA TTGTACACTCCTTAATTTAAAGC TTTTTTATATTAATT TERM 2612 1992518 - 1992567 + r 71 -7.4 -3.88115 | opp_overlap 1992521 1992525, overlap 1992517 1992519 1992525 1992557 AAAGTATTCTTTTTA ATATAAATTAGGGAGTGTTCAA AAAAAA TTGTACACTCCTTAATTTAAAG CTTTTTTATATTAAT TERM 2613 1992519 - 1992566 + r 85 -10.9 -2.91242 | opp_overlap 1992521 1992525, overlap 1992518 1992517 1992525 1992557 AAGTATTCTTTTTAA TATAAATTAGGGAGTGTTCAA AAAAAA TTGTACACTCCTTAATTTAAA GCTTTTTTATATTAA TERM 2614 1992564 - 1992521 - R 87 -11.3 -3.02144 | opp_overlap 1992519 1992518 1992517 1992525 1992557, overlap 1992525 GTATTCTTTTTAATA TAAATTAGGGAGTGTTCAA AAAAAA TTGTACACTCCTTAATTTA AAGCTTTTTTATATT TERM 2615 1992560 - 1992525 - R 77 -7.7 -4.1891 | opp_overlap 1992519 1992518 1992517 1992525 1992557, overlap 1992521 TCTTTTTAATATAAA TTAGGGAGTGTTCAA AAAAAA TTGTACACTCCTTAA TTTAAAGCTTTTTTA TERM 2616 1992525 - 1992560 + r 90 -9.9 -3.7046 | opp_overlap 1992525 1992521, overlap 1992519 1992518 1992517 1992557 TCTTTTTAATATAAA TTAGGGAGTGTTCAA AAAAAA TTGTACACTCCTTAA TTTAAAGCTTTTTTA CLH_1865 1992882 - 1992595 - | hypothetical protein TERM 2617 1993246 - 1993304 + r 81 -7.1 -4.74285 | opp_overlap 1993255 1993257, overlap 1993249 1993253 1993255 1993257 TTACGACTTGATTTT TCATAAAAATGGCCATTCAAAATAATT TATTT AATAATTTTGAATGGCTATCATTATTA TTTTATATTATAAAT TERM 2618 1993249 - 1993301 + r 86 -8.8 -4.46621 | opp_overlap 1993255 1993257, overlap 1993246 1993253 1993255 1993257 CGACTTGATTTTTCA TAAAAATGGCCATTCAAAATAATT TATTT AATAATTTTGAATGGCTATCATTA TTATTTTATATTATA TERM 2619 1993253 - 1993297 + r 80 -9.6 -3.15982 | opp_overlap 1993255 1993257, overlap 1993249 1993246 1993255 1993257 TTGATTTTTCATAAA AATGGCCATTCAAAATAATT TATTT AATAATTTTGAATGGCTATC ATTATTATTTTATAT TERM 2620 1993295 - 1993255 - R 100 -10 -4.83615 | opp_overlap 1993255 1993253 1993249 1993246 1993257, overlap 1993257 GATTTTTCATAAAAA TGGCCATTCAAAATAATT TATTT AATAATTTTGAATGGCTA TCATTATTATTTTAT TERM 2621 1993255 - 1993295 + r 90 -12.2 -3.11539 | opp_overlap 1993255 1993257, overlap 1993253 1993249 1993246 1993257 GATTTTTCATAAAAA TGGCCATTCAAAATAATT TATTT AATAATTTTGAATGGCTA TCATTATTATTTTAT TERM 2622 1993257 - 1993293 + r 93 -12.6 -3.0914 | opp_overlap 1993255 1993257, overlap 1993255 1993253 1993249 1993246 TTTTTCATAAAAATG GCCATTCAAAATAATT TATTT AATAATTTTGAATGGC TATCATTATTATTTT TERM 2623 1993293 - 1993257 - R 90 -12.6 -2.6933 | opp_overlap 1993257 1993255 1993253 1993249 1993246, overlap 1993255 TTTTTCATAAAAATG GCCATTCAAAATAATT TATTT AATAATTTTGAATGGC TATCATTATTATTTT CLH_1866 1995313 - 1993307 - | membrane associated methyl-accepting chemotaxis protein TERM 2624 1995520 - 1995467 - R 71 -6.4 -4.02022 | opp_overlap 1995472, overlap 1995472 1995508 TTTAATTATTACAAA TTTAACTTATGAATATGTTTTATA TGAATT CATACAACATATTCATAAGTTTTA TAAAATATAAACTAT TERM 2625 1995515 - 1995472 - R 90 -10.7 -3.34455 | opp_overlap 1995472, overlap 1995467 1995508 TTATTACAAATTTAA CTTATGAATATGTTTTATA TGAATT CATACAACATATTCATAAG TTTTATAAAATATAA TERM 2626 1995472 - 1995515 + r 100 -10 -4.41548 | opp_overlap 1995467 1995472 1995508 TTATTACAAATTTAA CTTATGAATATGTTTTAT ATGAATTC ATACAACATATTCATAAG TTTTATAAAATATAA CLH_1867 1997527 - 1995551 - | radical SAM domain protein TERM 2627 1995847 - 1995863 + g 90 -8.7 -4.64861 | opp_overlap 1995835, overlap 1995835 GAAGCAATGCTCTTT GCATGGC TTT GTCATGC TTTGTTTTAGGAACA TERM 2628 1997298 - 1997311 + g 77 -5.3 -5.07053 | ACTAAAAATCCATAT TTAGG TTTC CCTAA TTTTTTAAAGTCATT TERM 2629 1997764 - 1997728 - R 100 -7 -6.01369 | gap 2, opp_overlap 1997728 1997740 TAAAGAATAAAAAAA TACAATTAAAGT--GTGA AAT TCACTTACTTTAATTGTA CATTGTTTTTTACTA CLH_1868 1998658 - 1997789 - | DegV family protein TERM 2630 1999032 - 1999071 + r 100 -15.4 -2.86164 | opp_overlap 1999032, overlap 1999034 1999037 1999042 GAAAAATATAAAAAA TACAATTAAAGGAGTTTA CAAT TAATCTCCTTTAATTGTA TGCTTACTTAATAAT TERM 2631 1999071 - 1999032 - R 100 -15.4 -5.69068 | opp_overlap 1999032 1999034 1999037 1999042 GAAAAATATAAAAAA TACAATTAAAGGAGTTTA CAAT TAATCTCCTTTAATTGTA TGCTTACTTAATAAT TERM 2632 1999034 - 1999069 + r 95 -13.6 -2.97613 | opp_overlap 1999032, overlap 1999032 1999037 1999042 AAAATATAAAAAATA CAATTAAAGGAGTTTA CAAT TAATCTCCTTTAATTG TATGCTTACTTAATA TERM 2633 1999037 - 1999066 + r 83 -9.5 -3.62476 | opp_overlap 1999032, overlap 1999034 1999032 1999042 ATATAAAAAATACAA TTAAAGGAGTTTA CAAT TAATCTCCTTTAA TTGTATGCTTACTTA CLH_1869 2000096 - 1999155 - | glycyl-radical enzyme activating protein family CLH_1870 2001400 - 2000132 - | transporter, major facilitator family TERM 2634 2001360 - 2001340 - G 71 -2.6 -5.4148 | gap 1, overlap 2001342 2001343 CAAATAAGCAAAAAA CAGCTAGCC ATGA GGCTAG-TA CAACCATATGACCTA TERM 2635 2001358 - 2001343 - G 78 -9 -3.15885 | overlap 2001342 2001340 ATAAGCAAAAAACAG CTAGCC ATGA GGCTAG TACAACCATATGACC TERM 2636 2001459 - 2001424 - R 72 -7.8 -3.51232 | opp_overlap 2001429, overlap 2001429 TCCCTTTTAAAGTAA TAAAAGGATATGCTAA GACA TTAACATACCCTTTTT AATTTTTAGTTTTGT TERM 2637 2001454 - 2001429 - R 86 -7.7 -4.84642 | opp_overlap 2001429, overlap 2001424 TTTAAAGTAATAAAA GGATATGCTAA GACA TTAACATACCC TTTTTAATTTTTAGT CLH_1871 2001821 - 2001552 - | 4-hydroxyphenylacetate decarboxylase, regulatory subunit CLH_1872 2004545 - 2001828 - | 4-hydroxyphenylacetate decarboxylase, catalytic subunit TERM 2638 2004192 - 2004180 - G 74 -4.1 -5.28176 | TTTAGCTACAAAAAA GCCTT CTG AAAGC CAAGGCATCGGAAAT TERM 2639 2004821 - 2004786 - R 95 -12.2 -3.80551 | opp_overlap 2004791, overlap 2004791 TAAATACCTATTAAA TAAAATAAGATACAAC CTAA GTTGTATCTTATTTTT AGTATTAATTATAAT TERM 2640 2004791 - 2004816 + r 100 -12.1 -4.90136 | opp_overlap 2004786 2004791 ACCTATTAAATAAAA TAAGATACAAC CTAA GTTGTATCTTA TTTTTAGTATTAATT TERM 2641 2004816 - 2004791 - R 100 -12.1 -4.9448 | opp_overlap 2004791, overlap 2004786 ACCTATTAAATAAAA TAAGATACAAC CTAA GTTGTATCTTA TTTTTAGTATTAATT CLH_1873 2005734 - 2004826 - | metal dependent phosphohydrolase, HD region with Response Regulator Receiver modulation CLH_1874 2007808 - 2005763 - | Two component system histidine kinase CLH_1875 2008550 - 2007819 - | sigma-70, region 4 family TERM 2642 2008037 - 2008047 + g 74 -4 -5.36364 | AAAATAAATCTTCAT TGAA TTT TTCA TTTTTATCTTTTTCA TERM 2643 2008787 - 2008742 - R 100 -14.5 -4.9725 | opp_overlap 2008747 2008755 2008786, overlap 2008744 ATCTCTATATAAAAA TTTAAGGTAAAAAGAAAAATT ACTA AATTCTTCTTTTTACCTTATA AAATTAAATAGAACT TERM 2644 2008785 - 2008744 - R 100 -17.1 -2.74094 | opp_overlap 2008747 2008755, overlap 2008742 CTCTATATAAAAATT TAAGGTAAAAAGAAAAATT ACTA AATTCTTCTTTTTACCTTA TAAAATTAAATAGAA TERM 2645 2008747 - 2008782 + r 95 -12.2 -3.36968 | opp_overlap 2008744 2008742, overlap 2008755 TATATAAAAATTTAA GGTAAAAAGAAAAATT ACTA AATTCTTCTTTTTACC TTATAAAATTAAATA CLH_1876 2010555 - 2008840 - | methyl-accepting chemotaxis sensory transducer TERM 2646 2008927 - 2008942 + g 71 -7.6 -3.63228 | overlap 2008919 CGCACTTGCTGTTTC TTCAGC TGTT GCTGAA TTAGTTTGTGCTACC TERM 2647 2009664 - 2009639 - G 73 -8.5 -3.0263 | opp_overlap 2009628 2009639 2009644, overlap 2009641 2009644 ATGATCTTTTCAAGA GATAATTTCAT TGGC ATGAAATTACC TGTATACTGCAATGA CLH_1877 2011670 - 2010657 - | periplasmic-iron-binding protein BitA TERM 2648 2011865 - 2011898 + r 100 -9.9 -4.82901 | opp_overlap 2011865 TATAAAGCACATAAA CTATTTGTAATATTT GGTT AAATAATACAAATAG TTTTTATAAAAAGGA TERM 2649 2011898 - 2011865 - R 93 -9.9 -4.19123 | opp_overlap 2011865 TATAAAGCACATAAA CTATTTGTAATATTT GGTT AAATAATACAAATAG TTTTTATAAAAAGGA TERM 2650 2011950 - 2011911 - R 100 -12.4 -4.83615 | opp_overlap 2011905 2011903 TAGTTTTTATAAAAA GGATGTATCATAATTCAT AAAA ATGCAATATGATACATCC CACTTATATAATTTA CLH_1878 2014077 - 2012089 - | putative methyl-accepting chemotaxis protein TERM 2651 2014257 - 2014281 + r 100 -14.5 -3.74792 | opp_overlap 2014257 AAGCACAATAAAAAA CTACTCAACAA TAA TTGTTGAGTAG TTTAAATATATAATA TERM 2652 2014281 - 2014257 - R 100 -14.5 -5.59534 | opp_overlap 2014257 AAGCACAATAAAAAA CTACTCAACAA TAA TTGTTGAGTAG TTTAAATATATAATA TERM 2653 2014341 - 2014361 + r 86 -9.7 -3.88559 | TAAATGAATGTATTG GAGCCGGAA TTC TTCCGCCTC TTTGTGCAAATAATT CLH_1879 2015673 - 2014318 - | hypothetical protein CLH_1880 2015957 - 2015688 - | ACT domain protein CLH_1881 2018345 - 2016126 - | putative cell wall anchored protein CLH_1882 2019617 - 2018367 - | N-acetylglucosaminyltransferase CLH_1883 2020984 - 2019629 - | hypothetical protein TERM 2654 2020974 - 2020990 + g 72 -6.7 -4.21408 | TCAAACAGTTTATTC TTGAATA TCA TATTCAA TTTCCTTTTCAGCTT CLH_1884 2021822 - 2020968 - | putative signaling protein CLH_1885 2023324 - 2021837 - | putative transmembrane protein TERM 2655 2023369 - 2023350 - R 71 -6.6 -4.15833 | opp_overlap 2023331 AGGATTATTTTAAAA TCATATAA TTTT TTATATGA TCAATGAAATTTTAA TERM 2656 2023661 - 2023618 - R 76 -6.3 -4.81551 | overlap 2023623 TATTTACAGCAAAAA TAAAAGAAATAAGTCACTA ATTTAA TGGTAACCTATTTCTCTTA TTTTTTAATACTTAT TERM 2657 2023656 - 2023623 - R 72 -4 -5.32396 | overlap 2023618 ACAGCAAAAATAAAA GAAATAAGTCACTA ATTTAA TGGTAACCTATTTC TCTTATTTTTTAATA CLH_1886 2024187 - 2023684 - | hypothetical protein CLH_1887 2024446 - 2024270 - | hypothetical protein TERM 2658 2024559 - 2024525 - R 81 -5.3 -5.33866 | gap 1, opp_overlap 2024525 2024520, overlap 2024518 TAAATTTATAAAAAA GACATAAAAAAGATTT ATTT AACTCTT-TTTATGTC TTTTATTAACTAATT TERM 2659 2024525 - 2024559 + r 71 -5.3 -4.69656 | gap 1, opp_overlap 2024518 2024525, overlap 2024520 TAAATTTATAAAAAA GACATAAAAAAGATTT ATTT AACTCTT-TTTATGTC TTTTATTAACTAATT CLH_1888 2025088 - 2024579 - | citrulline cluster-linked gene TERM 2660 2025528 - 2025506 - R 100 -8.5 -6.01369 | TAAAGAATAAAAAAA TCGTAGGAC ATTAA ATCCTACGA TAAAAATTCAATAAT TERM 2661 2025545 - 2025578 + r 72 -8.5 -3.16742 | opp_overlap 2025548 2025552, overlap 2025548 2025552 AAAAATTCAATAATC TAATAAACCTTTATA AATA TATAAAAGTTTATTA TTACTAAAAGTTAAC TERM 2662 2025575 - 2025548 - R 70 -8 -3.29861 | opp_overlap 2025545 2025548 2025552, overlap 2025552 AATTCAATAATCTAA TAAACCTTTATA AATA TATAAAAGTTTA TTATTACTAAAAGTT galE 2026665 - 2025676 - | UDP-glucose 4-epimerase CLH_1890 2027489 - 2026812 - | GTP-pyrophosphokinase TERM 2663 2027561 - 2027524 - H 86 -8.7 -4.54205 | opp_overlap 2027533 2027537, overlap 2027526 AGTATACTAAATAAA CATCTACAATGAATATG TTAA CATATTCATTGTAAAAA TCAATCTTTTAAAAT TERM 2664 2027559 - 2027526 - H 100 -13.5 -3.8721 | opp_overlap 2027533 2027537, overlap 2027524 TATACTAAATAAACA TCTACAATGAATATG TTAA CATATTCATTGTAAA AATCAATCTTTTAAA TERM 2665 2027533 - 2027552 + H 70 -8 -3.31461 | opp_overlap 2027526 2027524, overlap 2027537 AATAAACATCTACAA TGAATATG TTAA CATATTCA TTGTAAAAATCAATC TERM 2666 2028745 - 2028731 - g 71 -4.4 -4.87665 | CTTTATCCAGAAAAA TTTAAA AAT TTTAAA AGTGTTAAAGTTGAT CLH_1891 2027696 - 2029051 + | [Fe] hydrogenase CLH_1892 2029398 - 2031443 + | putative propeptide, PepSY amd peptidase M4 TERM 2667 2031548 - 2031523 - T 85 -9.9 -3.17319 | opp_overlap 2031523 2031522 2031537, overlap 2031521 2031529 2031535 TTGAACTTATGAATA CTAAAATGAGA ATAG TCCCATTTTAG CTTGCTCTCAATATG TERM 2668 2031591 - 2031535 - T 95 -11.3 -3.71148 | opp_overlap 2031523 2031522 2031537, overlap 2031529 2031523 2031521 ATACTAAAATGAGAA TAGTCCCATTT-TAGCTTGCTCTCAAT ATGAA ATTGGGA-CAAGCGATAAATGGGACTA TTAAAATGGAACTCC TERM 2669 2031537 - 2031589 + T 90 -11.7 -3.05963 | opp_overlap 2031529 2031523 2031521 2031535, overlap 2031523 2031522 ACTAAAATGAGAATA GTCCCATTT-TAGCTTGCTCTCAAT ATGAA ATTGGGA-CAAGCGATAAATGGGAC TATTAAAATGGAACT CLH_1893 2032245 - 2031766 - | methylated-DNA-[protein]-cysteine S-methyltransferase TERM 2670 2031936 - 2031947 + g 73 -4.4 -5.08169 | CAGCCCTTGATGCCT TAGG ATTT CCTA TTTTTTCAGCTATAT CLH_1894 2033093 - 2032281 - | purine nucleoside phosphorylase I, inosine and guanosine-specific tyrS 2034378 - 2033164 - | tyrosyl-tRNA synthetase TERM 2671 2034533 - 2034563 + r 100 -14.2 -3.05727 | opp_overlap 2034533, overlap 2034558 ATGACAACAAAAAAA CTCTCATCCTTTAT TTT ATAAAGGACGAGAG TATATCTCGTGTTAC TERM 2672 2034563 - 2034533 - R 100 -16.4 -5.89921 | opp_overlap 2034533 2034558 ATGACAACAAAAAAA CTCTCATCCTTTAT TTT ATAAAGGACGAGAG TATATCTCGTGTTAC TERM 2673 2035334 - 2035291 - R 70 -4.8 -4.8622 | overlap 2035293 2035298 TTTTTTAATTAAAAA GATAAAAGAGATTAATACTA AATC TAGTATCCACCCCTTTTATT TTAATTTCAGGTTCC TERM 2674 2035332 - 2035293 - R 73 -7.4 -4.05402 | overlap 2035291 2035298 TTTTAATTAAAAAGA TAAAAGAGATTAATACTA AATC TAGTATCCACCCCTTTTA TTTTAATTTCAGGTT CLH_1896 2036772 - 2035477 - | amidohydrolase TERM 2675 2035614 - 2035594 - G 74 -9.1 -2.95298 | opp_overlap 2035597, overlap 2035597 2035604 TCCATCTATCATAGA CAAGCAAAT ATC ACTTGCTTG TGAAGAGTAGAATAT TERM 2676 2036981 - 2037038 + r 75 -9.7 -2.69874 | gap 1, opp_overlap 2036994, overlap 2036985 2036994 GTTAATCAAATTTTC TAAATGATAAAAATAGACTATCGCAAAA ATA TTTTACAATAGTCTA-TTTAATCATTTA ATTATAATAATTTAT TERM 2677 2036994 - 2037026 + r 75 -7.9 -3.90684 | opp_overlap 2036994, overlap 2036985 2036981 TCTAAATGATAAAAA TAGACTATCGCAAAA ATA TTTTACAATAGTCTA TTTAATCATTTAATT TERM 2678 2037026 - 2036994 - R 100 -12.3 -5.04325 | opp_overlap 2036994 2036985 2036981 TCTAAATGATAAAAA TAGACTATCGCAAAA ATA TTTTACAATAGTCTA TTTAATCATTTAATT pyc 2040617 - 2037177 - | pyruvate carboxylase TERM 2679 2038028 - 2038040 + g 77 -4.9 -5.30686 | TTATTATGTCTCCAA GTAAA TCA TTTAC TTTTTTGTACATCTT TERM 2680 2041252 - 2041223 - R 73 -5.8 -4.87291 | opp_overlap 2041223 2041226, overlap 2041207 TATTTTAATTAAAAA TAACTGAGTGTA ATAAAA TACTCTCAGCTA TTTTTTGATAAACCT TERM 2681 2041223 - 2041252 + r 70 -3.6 -5.14965 | opp_overlap 2041207 2041223, overlap 2041226 TATTTTAATTAAAAA TAACTGAGTGTA ATAAAA TACTCTCAGCTA TTTTTTGATAAACCT CLH_1898 2042783 - 2041410 - | mate efflux family protein TERM 2682 2043082 - 2043044 - R 100 -9.2 -5.3798 | opp_overlap 2043044 GAATAATAAGAAAAA CTAGAATCATAATTAA TAATACT CTAACTATGATTCTAG TTTTTCTTATATCTA TERM 2683 2043044 - 2043082 + r 80 -6.3 -5.27206 | opp_overlap 2043044 GAATAATAAGAAAAA CTAGAATCATAATTA ATAATACTC TAACTATGATTCTAG TTTTTCTTATATCTA xpt 2043721 - 2043149 - | xanthine phosphoribosyltransferase TERM 2684 2043312 - 2043328 + g 70 -7.9 -3.4285 | opp_overlap 2043308 CCTTCTACTAATCTT GCTGCTC CAA GAGCTGC TTCTCCATTAGCTAA CLH_1900 2045088 - 2043724 - | xanthine permease TERM 2685 2045176 - 2045201 + r 90 -10.6 -3.33711 | opp_overlap 2045176 AATCTAATAAAAAAA CACCTCAAAT CATAAA ATTTGAGGTG TTGCATTTCTAGATA TERM 2686 2045201 - 2045176 - R 100 -11.3 -5.83226 | opp_overlap 2045176 AATCTAATAAAAAAA CACCTCAAATC ATAA AATTTGAGGTG TTGCATTTCTAGATA CLH_1901 2046611 - 2045424 - | transporter, major facilitator family TERM 2687 2047036 - 2047058 + r 95 -12 -3.35679 | opp_overlap 2047027 2047041, overlap 2047038 CTAAAAGCTCTCCGG AACCACCGGT CTA ACCGGTGGTA TTCTAAATACAAAAA TERM 2688 2047038 - 2047056 + r 100 -14.6 -3.24924 | opp_overlap 2047041, overlap 2047036 AAAAGCTCTCCGGAA CCACCGGT CTA ACCGGTGG TATTCTAAATACAAA TERM 2689 2047053 - 2047041 - R 72 -9.1 -2.71011 | opp_overlap 2047038 2047036 AGCTCTCCGGAACCA CCGGT CTA ACCGG TGGTATTCTAAATAC TERM 2690 2047069 - 2047119 + r 86 -8.7 -4.48263 | opp_overlap 2047075, overlap 2047075 TGGTATTCTAAATAC AAAAAAGGAATTGAATTAATTTA AACTA TAAATTAATTCAATTCCTTATGC TTTTAATGTTCTCTA TERM 2691 2047113 - 2047075 - R 100 -16.5 -5.56264 | opp_overlap 2047069 2047075 TCTAAATACAAAAAA GGAATTGAATTAATTTA AACTA TAAATTAATTCAATTCC TTATGCTTTTAATGT TERM 2692 2047075 - 2047113 + r 100 -16.5 -3.71148 | opp_overlap 2047075, overlap 2047069 TCTAAATACAAAAAA GGAATTGAATTAATTTA AACTA TAAATTAATTCAATTCC TTATGCTTTTAATGT CLH_1902 2048502 - 2047132 - | mate efflux family protein TERM 2693 2048598 - 2048631 + r 75 -7 -4.27617 | opp_overlap 2048600 2048602 2048607 TGTAGGTAATGTTAA GACATATAATTATT AAAATA AATAATCATATGTC TTTTAATAAAATATC CLH_1903 2051696 - 2048772 - | putative exonuclease CLH_1904 2051852 - 2051706 - | hypothetical protein TERM 2694 2052032 - 2051999 - R 100 -17.1 -5.24799 | opp_overlap 2051991 2052009 2052023, overlap 2052025 TTAGAAATAGAAAAA GTTCCAGATATAATA AATT TATTATATCTGGAAC TCTCCAAATAATTTA CLH_1905 2052452 - 2052201 - | hypothetical protein CLH_1906 2052738 - 2052547 - | hypothetical protein CLH_1907 2053284 - 2052787 - | hypothetical protein CLH_1908 2054458 - 2053388 - | N- phage replisome organiser TERM 2695 2054485 - 2054502 + r 76 -8.5 -3.74868 | TCCTTTTAATATTTT GTGTACA CCTT TGTACAC TTACTTATTTTTAAA TERM 2696 2054588 - 2054604 + r 73 -3.1 -5.61913 | opp_overlap 2054587, overlap 2054587 2054601 ATTAAAAGAAAAGTT TTTAAGA AAA TTTTAAA TTTTTTATATTTATT TERM 2697 2054753 - 2054730 - R 78 -4.6 -5.60864 | TAGATAGTAAAAAAA CACCAGCATA TTTT TACACTGATG TTATTTATATTTGTA CLH_1909 2055586 - 2054918 - | hypothetical protein TERM 2698 2055048 - 2055034 - G 72 -3.6 -5.252 | TATCCTTATAAAAAA CAACAT GAA ATATTG TTATATATCTATTAT CLH_1910 2055901 - 2056179 + | hypothetical protein TERM 2699 2056326 - 2056366 + F 100 -10.8 -5.63517 | TGTATTTTAAATTTG GATGATTATTGTTACTTT CAGTT GGAGTAATAATAATCATC TTTTTTATTTAAGCC CLH_1911 2056456 - 2057118 + | putative fibronectin-binding protein TERM 2700 2057126 - 2057113 - T 73 -5.3 -4.79752 | GTTAATAATATAAAA GAATG ATTA CATTC ACTTATGTACATTCT TERM 2701 2057185 - 2057218 + T 75 -6.8 -4.3898 | opp_overlap 2057197, overlap 2057181 2057187 ACAAACTAGACCTTT AAGCCTAAAGTACC TTAAAT GATACTTTAGGCTA TTTTCTAACAATCAT TERM 2702 2057187 - 2057216 + T 84 -9.4 -3.80133 | opp_overlap 2057197, overlap 2057181 2057185 AAACTAGACCTTTAA GCCTAAAGTACC TTAAAT GATACTTTAGGC TATTTTCTAACAATC CLH_1912 2057578 - 2057330 - | hypothetical protein CLH_1913 2059272 - 2057692 - | alpha/beta superfamily hydrolase CLH_1914 2060857 - 2059451 - | hypothetical protein TERM 2703 2060553 - 2060567 + g 75 -5.7 -4.70887 | overlap 2060554 ACTATATCTATGTAT GGAAG TAAAT CTTCC TTTATTTCTTCATCG CLH_1915 2061567 - 2060866 - | transcriptional regulatory protein ResD TERM 2704 2061862 - 2061826 - R 89 -12.5 -2.87229 | opp_overlap 2061831, overlap 2061831 ATTTTATTATTAAAC CAAAATCTAAGGTGGCA AAA CACCACCTTAGATTTTT TTATATTCAATTAAT TERM 2705 2061831 - 2061857 + r 100 -11 -5.80817 | opp_overlap 2061831 2061826 ATTATTAAACCAAAA TCTAAGGTGG CAAAACA CCACCTTAGA TTTTTTTATATTCAA TERM 2706 2061857 - 2061831 - R 100 -12.4 -4.59376 | opp_overlap 2061831, overlap 2061826 ATTATTAAACCAAAA TCTAAGGTGGCA AAA CACCACCTTAGA TTTTTTTATATTCAA CLH_1916 2062532 - 2061879 - | CoA-transferase, B subunit CLH_1917 2063262 - 2062546 - | CoA-transferase, A subunit TERM 2707 2063734 - 2063697 - R 95 -10.2 -4.20981 | opp_overlap 2063697, overlap 2063690 TTAATAAATTAGAAA TGCTAATAAAACTTAA ATCTAA TTAAGCTCTATTAGCA TTCTTCTTAATCTCT CLH_1918 2065472 - 2063796 - | hypothetical protein TERM 2708 2065589 - 2065563 - R 100 -10.2 -4.37711 | opp_overlap 2065563 2065562, overlap 2065564 TTATTAAACCTAAAA CCTAAGGTGGCA AAA CACCACCTTAGA AATTTTTTATATTCG TERM 2709 2065588 - 2065564 - R 93 -11.5 -3.21904 | opp_overlap 2065563 2065562, overlap 2065563 TATTAAACCTAAAAC CTAAGGTGGCA AAA CACCACCTTAG AAATTTTTTATATTC CLH_1919 2066046 - 2065585 - | hypothetical protein CLH_1920 2066783 - 2066022 - | hypothetical protein TERM 2710 2066955 - 2066992 + r 78 -5.8 -5.25906 | opp_overlap 2066955 AAACTGCACTAAAAA TGCTAATAAAACTTAA ACTTAA TTAAGCTCTATTAGCA TTTTTCTTAATTTAT TERM 2711 2066992 - 2066955 - R 100 -10.2 -4.75404 | opp_overlap 2066955 AAACTGCACTAAAAA TGCTAATAAAACTTAA ACTTAA TTAAGCTCTATTAGCA TTTTTCTTAATTTAT CLH_1921 2067598 - 2067038 - | hypothetical protein CLH_1922 2067774 - 2067610 - | filamentation induced by cAMP protein Fic TERM 2712 2067894 - 2067904 + H 75 -4 -5.62045 | AAAGGTCTTTTGCTA TCTA AAA TAGA TTTTTTATTATCTAT dndB 2068299 - 2069387 + | DNA sulfur modification protein DndB TERM 2713 2070731 - 2070753 + G 70 -5.7 -4.27519 | opp_overlap 2070735 GATGAAGAAGAAGAT TTAACTAGA AGAAC TCTAGTTGA TTTATATTATGAGGT dndC 2069387 - 2071015 + | putative sulfurtransferase DndC dndD 2071005 - 2073164 + | DNA sulfur modification protein DndD CLH_1926 2073167 - 2073556 + | hypothetical protein CLH_1927 2073553 - 2074749 + | cysteine desulfurase TERM 2714 2074766 - 2074728 - T 90 -10.6 -3.37499 | opp_overlap 2074728 2074738, overlap 2074738 TAATAGCCTAATTAA TCTAAAAAAAGTGAGAAT TTA ATTCTCACTTTTTTAATA ATTCTTCAATAGTAT TERM 2715 2074728 - 2074766 + T 82 -10.6 -2.81584 | opp_overlap 2074728 2074738, overlap 2074738 TAATAGCCTAATTAA TCTAAAAAAAGTGAGAAT TTA ATTCTCACTTTTTTAATA ATTCTTCAATAGTAT TERM 2716 2074738 - 2074756 + T 100 -10.4 -5.22794 | opp_overlap 2074728 2074738, overlap 2074728 ATTAATCTAAAAAAA GTGAGAAT TTA ATTCTCAC TTTTTTAATAATTCT TERM 2717 2074756 - 2074738 - T 100 -10.4 -5.54192 | opp_overlap 2074738 2074728, overlap 2074728 ATTAATCTAAAAAAA GTGAGAAT TTA ATTCTCAC TTTTTTAATAATTCT CLH_1928 2075529 - 2074753 - | hypothetical protein CLH_1929 2077373 - 2075577 - | hypothetical protein TERM 2718 2077499 - 2077465 - R 95 -10.3 -4.08692 | opp_overlap 2077469 2077473, overlap 2077469 2077473 TAAGCTTTTCTAAAA TTAAGAAAGAGATAA GCTAT TTATCTCTTTCTTGA ATATAATATTATTTC TERM 2719 2077469 - 2077495 + r 93 -11.8 -3.16154 | opp_overlap 2077469 2077465 2077473, overlap 2077473 CTTTTCTAAAATTAA GAAAGAGATAAG CTA TTTATCTCTTTC TTGAATATAATATTA TERM 2720 2077495 - 2077469 - R 95 -11.1 -3.66908 | opp_overlap 2077469 2077473, overlap 2077465 2077473 CTTTTCTAAAATTAA GAAAGAGATAA GCTAT TTATCTCTTTC TTGAATATAATATTA TERM 2721 2077491 - 2077473 - R 72 -6.1 -4.45765 | opp_overlap 2077469 2077473, overlap 2077469 2077465 TCTAAAATTAAGAAA GAGATAA GCTAT TTATCTC TTTCTTGAATATAAT TERM 2722 2077473 - 2077491 + r 73 -6.8 -4.23615 | opp_overlap 2077473 2077469 2077465, overlap 2077469 TCTAAAATTAAGAAA GAGATAAG CTA TTTATCTC TTTCTTGAATATAAT CLH_1930 2082769 - 2077508 - | hypothetical protein TERM 2723 2081160 - 2081174 + g 72 -3.6 -5.31456 | overlap 2081162 AATTCAATAATCTGT TTTTCA AGC TGAAGA TTTTTTCTAAATTCA CLH_1931 2084165 - 2082750 - | hypothetical protein CLH_1932 2086567 - 2084165 - | hypothetical protein TERM 2724 2086874 - 2086853 - R 72 -3.7 -5.36441 | TTGGCACATAAAAAA GAGCCCAAT CTTA ATCAAGCTC CTACTTTAAATTCTC CLH_1933 2087999 - 2086875 - | hypothetical protein TERM 2725 2088119 - 2088093 - R 79 -5.2 -5.55769 | TTCTACAACAAAAAA TAAGAGCCTACA TTA CATAGACTCTCA TTTATCATATTAATT CLH_1934 2088957 - 2088247 - | glycerol uptake facilitator protein TERM 2726 2089054 - 2089029 - R 100 -14.9 -3.67141 | opp_overlap 2089021 2089032, overlap 2089018 2089032 ATAATTTCATTTAAA GAACCCCTTTA AAAG TAAAGGGGTTC TCATAATAGTTATGT TERM 2727 2089051 - 2089032 - R 95 -10.8 -3.96483 | opp_overlap 2089021 2089032, overlap 2089018 2089029 ATTTCATTTAAAGAA CCCCTTTA AAAG TAAAGGGG TTCTCATAATAGTTA TERM 2728 2089032 - 2089051 + r 90 -10.8 -3.45737 | opp_overlap 2089018 2089032 2089029, overlap 2089021 ATTTCATTTAAAGAA CCCCTTTA AAAG TAAAGGGG TTCTCATAATAGTTA dhaT 2090248 - 2089091 - | 1,3-propanediol dehydrogenase TERM 2729 2090356 - 2090326 - R 82 -10 -3.04144 | opp_overlap 2090320 2090319 TTTGCATTGTTAACA CTATAGATATTTAA ATT TAAAATATCTATAG TATAAAATTTATTAT CLH_1936 2090808 - 2090383 - | DhaG protein CLH_1937 2091338 - 2090826 - | ATP:cob(I)alamin adenosyltransferase CLH_1938 2091719 - 2091360 - | glycerol dehydratase reactivation factor, small subunit CLH_1939 2093557 - 2091719 - | glycerol dehydratase reactivation factor large subunit TERM 2730 2092792 - 2092803 + g 72 -5.8 -4.46615 | opp_overlap 2092791 TTTTTTCTTGAACAT CACC TTTA GGTG TTTTAATTACTACTG CLH_1940 2094007 - 2093585 - | coenzyme B12-dependent glycerol dehydratase, small subunit CLH_1941 2094604 - 2094029 - | propanediol utilization: dehydratase, medium subunit CLH_1942 2096286 - 2094622 - | coenzyme B12-dependent glycerol dehydratase, large subunit TERM 2731 2096537 - 2096496 - R 85 -10.5 -2.95491 | opp_overlap 2096504, overlap 2096504 AAAGCTTATTATAGA CAAAAAAATCTACTTTCAA GCTT TTAAAAGTAGATTTTCATG TAAAACATAAGAAAA TERM 2732 2096529 - 2096504 - R 100 -8.5 -5.76633 | opp_overlap 2096504, overlap 2096496 TTATAGACAAAAAAA TCTACTTTCAA GCTT TTAAAAGTAGA TTTTCATGTAAAACA TERM 2733 2096504 - 2096529 + r 70 -6.3 -4.34402 | opp_overlap 2096504 2096496 TTATAGACAAAAAAA TCTACTTTCAA GCTT TTAAAAGTAGA TTTTCATGTAAAACA TERM 2734 2096555 - 2096587 + r 91 -10.8 -3.52459 | opp_overlap 2096555 AAACATAAGAAAAAA GCTACTTTATCACT ATTCA ATTGATAAAGTAGC TTCTATAAAATTACT TERM 2735 2096587 - 2096555 - R 100 -10.8 -5.66338 | opp_overlap 2096555 AAACATAAGAAAAAA GCTACTTTATCACT ATTCA ATTGATAAAGTAGC TTCTATAAAATTACT CLH_1943 2097335 - 2096601 - | DNA-bindng response regulator, AraC family TERM 2736 2096954 - 2096985 + g 78 -9 -3.17798 | opp_overlap 2096956, overlap 2096938 2096952 2096956 ATTCTTCCACATAAG AATCTTTGTTAATT TTTA AATTAACAAAGATA TGGTTTATTGTATCT TERM 2737 2096983 - 2096956 - G 93 -11.6 -3.88232 | opp_overlap 2096938 2096956 2096954 2096952 TCTTCCACATAAGAA TCTTTGTTAATT TTTA AATTAACAAAGA TATGGTTTATTGTAT TERM 2738 2096956 - 2096983 + g 91 -11.6 -3.1355 | opp_overlap 2096956, overlap 2096938 2096954 2096952 TCTTCCACATAAGAA TCTTTGTTAATT TTTA AATTAACAAAGA TATGGTTTATTGTAT CLH_1944 2098592 - 2097351 - | sensor histidine kinase CLH_1945 2098943 - 2102257 + | hypothetical protein TERM 2739 2102266 - 2102307 + T 100 -11.9 -4.74801 | opp_overlap 2102272, overlap 2102269 ACAATAGTTTTGTTT TAAGAATATTACTGGAAAT TTTA AGTTCCAGTAATATTCTTC TTTTTAATAAAATTG TERM 2740 2102269 - 2102304 + T 100 -13.6 -4.47707 | opp_overlap 2102272, overlap 2102266 ATAGTTTTGTTTTAA GAATATTACTGGAAAT TTTA AGTTCCAGTAATATTC TTCTTTTTAATAAAA TERM 2741 2102301 - 2102272 - T 83 -9.5 -3.61398 | opp_overlap 2102269 2102266 GTTTTGTTTTAAGAA TATTACTGGAAAT TTTA AGTTCCAGTAATA TTCTTCTTTTTAATA CLH_1946 2103527 - 2102385 - | divergent AAA domain family TERM 2742 2103680 - 2103653 - R 70 -3.5 -5.37345 | TTCAATTACAAAAAA TAAGAGCCTAC TTAAAT ATAGACTCTCA TTAATATTTTTATCT CLH_1947 2103977 - 2103690 - | DNA polymerase, beta domain protein region CLH_1948 2104420 - 2103983 - | putative nucleotidyltransferase substrate binding protein CLH_1949 2104673 - 2105524 + | morphine 6-dehydrogenase TERM 2743 2105670 - 2105649 - T 80 -9.5 -3.29461 | opp_overlap 2105653 2105654, overlap 2105654 TAACTTCCTGTACAA CAAAATCGC TAAT GCGACTTTG GAACTGTCATTTTTT TERM 2744 2105665 - 2105654 - T 73 -5.8 -4.77165 | opp_overlap 2105653 2105654, overlap 2105649 TCCTGTACAACAAAA TCGC TAAT GCGA CTTTGGAACTGTCAT TERM 2745 2105886 - 2105841 - T 100 -8.6 -6.01369 | gap 1, opp_overlap 2105838 2105841 TAAAGAATAAAAAAA CTCTATATGAGTAGATTATCT TTTAT AGTTC-TCTACTCATATAGAG TCAATTTTACATTTA CLH_1950 2106876 - 2106091 - | ferric enterobactin transport ATP-binding protein FepC CLH_1951 2107927 - 2106911 - | ferrichrome transport system permease protein FhuG TERM 2746 2107608 - 2107572 - G 73 -9.1 -2.62735 | overlap 2107577 ATATTGCTTATACCA TCATATATATTTCCATT CAT AATATAAATATATATGA CAACAAATAATGCTG CLH_1952 2108941 - 2107928 - | ferrichrome transport system permease protein FhuB TERM 2747 2109015 - 2108980 - R 79 -9.1 -3.53019 | overlap 2108978 CTATAAATTCAAATA GTAGGTGACAAAAGG GTTACT CCTCTCACCACCTAC TCTATATACTTGTAT CLH_1953 2109971 - 2109030 - | iron compound ABC transporter, iron compound-binding protein TERM 2748 2109982 - 2109996 + r 76 -2.8 -5.92399 | TTCATATAATTTCCT CCAAAA TTC TATTGG TTTTTTCTTTTGTTA TERM 2749 2110014 - 2110026 + r 74 -4.9 -5.23292 | TTTTCTTTTGTTATT GATAA TCA TTATC TTTTGTTTTGTATGC CLH_1954 2110308 - 2110147 - | hypothetical protein TERM 2750 2110387 - 2110442 + r 83 -6.5 -5.26155 | gap 1, opp_overlap 2110391 2110396 2110397 2110398 2110401, overlap 2110388 2110391 2110397 2110398 CAGGTAAATATTCTT ATAATAAAAGCGAACAGCC-CATGTA AAGTA TACATAAGGCTGTTCATTTTTATTAA TTTTTGTCTTTATAT TERM 2751 2110388 - 2110441 + r 90 -10 -3.73253 | gap 1, opp_overlap 2110391 2110396 2110397 2110398 2110401, overlap 2110387 2110391 2110397 2110398 AGGTAAATATTCTTA TAATAAAAGCGAACAGCC-CATGTA AAGTA TACATAAGGCTGTTCATTTTTATTA ATTTTTGTCTTTATA TERM 2752 2110391 - 2110438 + r 71 -7.3 -3.95047 | gap 1, opp_overlap 2110391 2110396 2110397 2110398 2110401, overlap 2110388 2110387 2110397 2110398 TAAATATTCTTATAA TAAAAGCGAACAGCC-CATGTA AAGTA TACATAAGGCTGTTCATTTTTA TTAATTTTTGTCTTT TERM 2753 2110438 - 2110391 - R 82 -9.5 -3.34029 | gap 1, opp_overlap 2110388 2110387 2110391 2110397 2110398, overlap 2110396 2110397 2110398 2110401 TAAATATTCTTATAA TAAAAGCGAACAGCC-CATGTA AAGTA TACATAAGGCTGTTCATTTTTA TTAATTTTTGTCTTT TERM 2754 2110433 - 2110396 - R 70 -5 -4.77567 | gap 1, opp_overlap 2110391 2110388 2110387 2110397 2110398, overlap 2110391 2110397 2110398 2110401 ATTCTTATAATAAAA GCGAACAGCC-CATGTA AAGTA TACATAAGGCTGTTCAT TTTTATTAATTTTTG TERM 2755 2110397 - 2110432 + r 72 -4.1 -5.30199 | gap 1, opp_overlap 2110397 2110396 2110391 2110398 2110401, overlap 2110391 2110388 2110387 2110398 TTCTTATAATAAAAG CGAACAGCC-CATGTA AAGTA TACATAAGGCTGTTCA TTTTTATTAATTTTT TERM 2756 2110432 - 2110397 - R 74 -8.5 -3.45817 | gap 1, opp_overlap 2110391 2110388 2110387 2110397 2110398, overlap 2110396 2110391 2110398 2110401 TTCTTATAATAAAAG CGAACAGCC-CATGTA AAGTA TACATAAGGCTGTTCA TTTTTATTAATTTTT TERM 2757 2110431 - 2110398 - R 79 -9.8 -2.67008 | gap 1, opp_overlap 2110397 2110391 2110388 2110387 2110398, overlap 2110397 2110396 2110391 2110401 TCTTATAATAAAAGC GAACAGCC-CATGTA AAGTA TACATAAGGCTGTTC ATTTTTATTAATTTT TERM 2758 2110398 - 2110431 + r 73 -7.6 -3.74459 | gap 1, opp_overlap 2110398 2110397 2110396 2110391 2110401, overlap 2110397 2110391 2110388 2110387 TCTTATAATAAAAGC GAACAGCC-CATGTA AAGTA TACATAAGGCTGTTC ATTTTTATTAATTTT CLH_1955 2112004 - 2110574 - | PTS system, glucose-like IIB component TERM 2759 2110901 - 2110913 + g 71 -2.7 -5.43553 | CATAGCACCTATACT TGTTG CCT TAACA TTTTCTTTTTTAGCT CLH_1956 2113696 - 2112023 - | oligo-1,6-glucosidase CLH_1957 2114552 - 2113707 - | putative hydrolase TERM 2760 2114235 - 2114225 - G 75 -5.4 -4.82901 | opp_overlap 2114225 CCTTGTTCATAAAAA CGAT ATC ATCG CTTTCAAATGTAAAA TERM 2761 2114471 - 2114485 + g 76 -8.6 -3.6707 | TTTGACTAATCTTTA CTGCTA CTT TAGCAG TTTCAGGTATTCCAT TERM 2762 2114629 - 2114597 - R 89 -10.1 -3.49482 | opp_overlap 2114602 2114605, overlap 2114605 TTATAGTATCAAATA CAAAAAAAGCAATCA ATA TGATTGCTCCTTTTA AAAAATATGTTCTTA TERM 2763 2114605 - 2114621 + r 78 -9.5 -3.08508 | opp_overlap 2114597 2114605, overlap 2114602 TCAAATACAAAAAAA GCAATCA ATA TGATTGC TCCTTTTAAAAAATA TERM 2764 2114621 - 2114605 - R 100 -9.5 -5.88197 | opp_overlap 2114605 2114602, overlap 2114597 TCAAATACAAAAAAA GCAATCA ATA TGATTGC TCCTTTTAAAAAATA CLH_1958 2115435 - 2114659 - | transcriptional regulator, RpiR family CLH_1959 2116190 - 2115432 - | transcriptional regulator, RpiR family CLH_1960 2116533 - 2116219 - | membrane spanning protein CLH_1961 2116843 - 2117388 + | hypothetical protein CLH_1962 2117547 - 2118218 + | hypothetical protein TERM 2765 2118222 - 2118243 + T 100 -8.8 -5.01732 | opp_overlap 2118222 2118242, overlap 2118240 ATTTTTCAATAAAAA GCTACTGT AAAATC ACAGTAGC TTTTTTAAAGCAATT TERM 2766 2118243 - 2118222 - T 100 -9.5 -5.06816 | opp_overlap 2118222 2118240, overlap 2118242 ATTTTTCAATAAAAA GCTACTGTA AAAT CACAGTAGC TTTTTTAAAGCAATT CLH_1963 2119519 - 2118299 - | FliB family protein CLH_1964 2120022 - 2119543 - | hypothetical protein TERM 2767 2120115 - 2120084 - H 95 -8.2 -5.24799 | opp_overlap 2120078 2120084 GCATAAATATAAAAA GTAGCACTAATATT TCTA AGTATTAATGCTAC TTTATCATTTATATT TERM 2768 2120084 - 2120115 + H 80 -8.2 -4.20211 | opp_overlap 2120084, overlap 2120078 GCATAAATATAAAAA GTAGCACTAATATT TCTA AGTATTAATGCTAC TTTATCATTTATATT CLH_1965 2120317 - 2120631 + | hypothetical protein TERM 2769 2120662 - 2120689 + T 72 -4.9 -4.92756 | opp_overlap 2120665, overlap 2120663 TTAATATTATGCTAT AGAGTGGATTA CGCTTA TAGTCCACTCA TTTATTTTTAATGCT TERM 2770 2120663 - 2120688 + T 75 -8.4 -3.54027 | opp_overlap 2120665, overlap 2120662 TAATATTATGCTATA GAGTGGATTA CGCTTA TAGTCCACTC ATTTATTTTTAATGC CLH_1966 2120989 - 2120720 - | hypothetical protein CLH_1967 2121291 - 2121001 - | acetyltransferase, gnat family CLH_1968 2122071 - 2121457 - | hypothetical protein CLH_1969 2123108 - 2122278 - | phosphoesterase TERM 2771 2122335 - 2122325 - G 73 -5.4 -4.72272 | CTGGTCTATTAAAAA TCCT TAA AGGA CAAATACTATTGCCT CLH_1970 2123563 - 2123162 - | glyoxalase/bleomycin resistance protein/dioxygenase CLH_1971 2124676 - 2123603 - | bacteriocin immunity protein TERM 2772 2124642 - 2124658 + g 70 -8.1 -3.01691 | overlap 2124639 CTAACTATTGCAACT TTATCAC CAG GTGATAA TGCTTTAGGTTTATT TERM 2773 2124771 - 2124785 + r 71 -7.2 -3.90464 | TTACAAATCTTTATC TTGCTT TTT AAGCAA TTCTCTTATTTCAAC CLH_1972 2124911 - 2124756 - | hypothetical protein CLH_1973 2125531 - 2124980 - | acetyltransferase, gnat family CLH_1974 2126037 - 2125609 - | nucleoside 2-deoxyribosyltransferase CLH_1975 2126773 - 2126180 - | maltose O-acetyltransferase TERM 2774 2126923 - 2126884 - R 86 -8.8 -4.48987 | opp_overlap 2126892, overlap 2126886 2126892 TTTGCATAAGTAAAA TTCTTAAAGTGGACAATC ATGT AATTGTCCACTTTAATCA CAATTCATTTATCAA TERM 2775 2126921 - 2126886 - R 82 -11.4 -2.56864 | opp_overlap 2126892, overlap 2126884 2126892 TGCATAAGTAAAATT CTTAAAGTGGACAATC ATGT AATTGTCCACTTTAAT CACAATTCATTTATC TERM 2776 2126892 - 2126915 + r 84 -9.7 -3.74747 | opp_overlap 2126892 2126886 2126884 AGTAAAATTCTTAAA GTGGACAAT CATGTA ATTGTCCAC TTTAATCACAATTCA TERM 2777 2126915 - 2126892 - R 91 -10.4 -3.67068 | opp_overlap 2126892, overlap 2126886 2126884 AGTAAAATTCTTAAA GTGGACAATC ATGT AATTGTCCAC TTTAATCACAATTCA CLH_1976 2128713 - 2126977 - | peptidase, M56 family protein TERM 2778 2128692 - 2128676 - G 70 -5.9 -4.43307 | CTTCCAATAAAAGAA GAAACTA TAG TAGTCTC GAAAAAATTCATACA CLH_1977 2129093 - 2128710 - | penicillinase repressor TERM 2779 2128760 - 2128774 + g 70 -5 -4.78077 | overlap 2128762 TCTTTAATTCTTCTA TGTCTG TTT CAGATA TTTCTTTTGATTCAA TERM 2780 2128966 - 2128985 + g 72 -5.8 -4.50859 | gap 1 ATTAAGCTCTTTATT GTAG-ATGG TTT CCATTCTAC TTTATCTTTTAGTTC TERM 2781 2129366 - 2129330 - R 100 -11.9 -5.8901 | opp_overlap 2129330 ATACAAAATAAAAAA TACCGCAAATTCATA AGAAAAA TATGAATTTGCAGTA TTTATAGTTGTTACA TERM 2782 2129330 - 2129366 + r 86 -9.7 -4.14257 | opp_overlap 2129330 ATACAAAATAAAAAA TACCGCAAATTCATA AGAAAAA TATGAATTTGCAGTA TTTATAGTTGTTACA CLH_1978 2129499 - 2129377 - | hypothetical protein CLH_1979 2130008 - 2129586 - | acetyltransferase, gnat family CLH_1980 2130183 - 2130392 + | hypothetical protein CLH_1981 2130385 - 2130852 + | hypothetical protein TERM 2783 2130893 - 2130858 - T 100 -8.5 -5.63103 | opp_overlap 2130858 2130857 2130849 2130890 GGCTAATTAAAAAAA CATAAAAGGATGG ACGTTAATTA CCATCCCTTTATG ATTTCTTAATTATAT CLH_1982 2131020 - 2130889 - | hydrolase, isochorismatase family CLH_1983 2131579 - 2131067 - | acetyltransferase, gnat family CLH_1984 2131977 - 2131852 - | hypothetical protein CLH_1985 2132483 - 2132043 - | acetyltransferase CLH_1986 2132882 - 2132538 - | hypothetical protein TERM 2784 2132709 - 2132685 - G 70 -6.5 -4.20797 | overlap 2132686 CCAAAATGACATAAA CGTAAGAACTC CAT AAGTTCCTACA ATTATTTTAAGAATT CLH_1987 2133833 - 2133366 - | hypothetical protein CLH_1988 2134131 - 2134457 + | hypothetical protein CLH_1989 2135743 - 2134640 - | methyl-accepting chemotaxis protein CLH_1990 2136536 - 2135994 - | hypothetical protein TERM 2785 2136728 - 2136759 + H 100 -13.4 -4.15222 | opp_overlap 2136733 2136735 TCGTGTATATTCTTA TTAGATATTTAGAT AATT ATCTAAATATCTAA TTTGTTGAAAGGAGT CLH_1991 2136781 - 2137062 + | transcriptional regulator ArsR family TERM 2786 2137337 - 2137347 + G 74 -4 -5.29208 | opp_overlap 2137337 ACTATTATCACAAAT GTTA TGG TAAC TTTCTTTTTTATTTT TERM 2787 2137587 - 2137603 + G 71 -3.8 -5.00616 | TATCTGGACTAGCTA TAATGA TTAGT TCATTA TTTTTTGAAGGAAAC CLH_1992 2137067 - 2137711 + | conserved membrane protein YvaZ TERM 2788 2137757 - 2137729 - f 78 -7.6 -4.3586 | opp_overlap 2137729 TTACTTATATCAAAA GATGTGGTTTTA ATCTA TAAAATCACATC TTTTTTTATTTACTT TERM 2789 2137729 - 2137757 + F 100 -9.8 -6.01187 | opp_overlap 2137729 TTACTTATATCAAAA GATGTGGTTTTA ATCTA TAAAATCACATC TTTTTTTATTTACTT CLH_1993 2138021 - 2139253 + | GerN TERM 2790 2139237 - 2139291 + T 100 -19 -4.51891 | opp_overlap 2139238 2139251 2139256, overlap 2139238 2139241 2139256 AAACTCTTCCTACTA ATTCTACTATAAAATAAAAGCGTGGC ATA GCCACGCTTTTATTTTATAGTATACC TTCTTTTTGATATGT TERM 2791 2139238 - 2139290 + T 100 -22.5 -3.29508 | opp_overlap 2139238 2139251 2139256, overlap 2139237 2139241 2139256 AACTCTTCCTACTAA TTCTACTATAAAATAAAAGCGTGGC ATA GCCACGCTTTTATTTTATAGTATAC CTTCTTTTTGATATG TERM 2792 2139290 - 2139238 - T 100 -22.5 -3.14463 | opp_overlap 2139237 2139238 2139241 2139256, overlap 2139251 2139256 AACTCTTCCTACTAA TTCTACTATAAAATAAAAGCGTGGC ATA GCCACGCTTTTATTTTATAGTATAC CTTCTTTTTGATATG TERM 2793 2139241 - 2139287 + T 100 -28.6 -2.80514 | opp_overlap 2139238 2139251 2139256, overlap 2139238 2139237 2139256 TCTTCCTACTAATTC TACTATAAAATAAAAGCGTGGC ATA GCCACGCTTTTATTTTATAGTA TACCTTCTTTTTGAT TERM 2794 2139277 - 2139251 - T 100 -18.2 -4.47328 | opp_overlap 2139241 2139238 2139237 2139256, overlap 2139238 2139256 AATTCTACTATAAAA TAAAAGCGTGGC ATA GCCACGCTTTTA TTTTATAGTATACCT TERM 2795 2139256 - 2139272 + T 100 -13.7 -5.20781 | opp_overlap 2139256 2139251 2139238, overlap 2139241 2139238 2139237 TACTATAAAATAAAA GCGTGGC ATA GCCACGC TTTTATTTTATAGTA TERM 2796 2139272 - 2139256 - T 100 -13.7 -5.20781 | opp_overlap 2139241 2139238 2139237 2139256, overlap 2139251 2139238 TACTATAAAATAAAA GCGTGGC ATA GCCACGC TTTTATTTTATAGTA CLH_1994 2139936 - 2139280 - | pentapeptide repeat protein TERM 2797 2139803 - 2139767 - G 71 -2.5 -5.50499 | GTACATTCAAAAAAA TTACAATCTTTAAAG TGAGCTC CTCTAAAACTTGTAA AGTTAAAATTTGATC TERM 2798 2139908 - 2139918 + g 100 -5.4 -5.98675 | TTATTATAGTTTAAT CCAA CAC TTGG TTTTTTATTTTTATC CLH_1995 2140445 - 2140020 - | hypothetical protein TERM 2799 2140296 - 2140276 - G 75 -7.7 -3.97022 | overlap 2140271 TTAATAGAAATATAA TCTTCACAT AAT ATGTGAAAA TCTAAAAAATAAGCA CLH_1996 2140806 - 2140438 - | DNA polymerase, beta domain protein region CLH_1997 2143131 - 2141122 - | methyl-accepting chemotaxis protein TERM 2800 2143184 - 2143198 + r 78 -4.4 -5.60864 | opp_overlap 2143184 2143186 ATTTCTCCTTAAAAG TATATT ATG AATATA TTTTTTTAATGTGTA TERM 2801 2143267 - 2143313 + r 78 -5.3 -5.09521 | opp_overlap 2143266 2143269 2143271 2143276, overlap 2143269 2143270 2143276 TATACAATACAAAAC GACACTAAAGGCTAGTTAC TTGTAATTT GTAACTAGCCTTTAGAATA TTTTTAGTTTATTAA TERM 2802 2143269 - 2143311 + r 77 -7.9 -4.15237 | opp_overlap 2143266 2143269 2143271 2143276, overlap 2143267 2143270 2143276 TACAATACAAAACGA CACTAAAGGCTAGTTAC TTGTAATTT GTAACTAGCCTTTAGAA TATTTTTAGTTTATT TERM 2803 2143311 - 2143269 - R 85 -10.1 -3.27747 | opp_overlap 2143269 2143267 2143270 2143276, overlap 2143266 2143271 2143276 TACAATACAAAACGA CACTAAAGGCTAGTTAC TTGTAATTT GTAACTAGCCTTTAGAA TATTTTTAGTTTATT TERM 2804 2143270 - 2143310 + r 87 -11.4 -3.06702 | opp_overlap 2143269 2143266 2143271 2143276, overlap 2143269 2143267 2143276 ACAATACAAAACGAC ACTAAAGGCTAGTTAC TTGTAATTT GTAACTAGCCTTTAGA ATATTTTTAGTTTAT TERM 2805 2143309 - 2143271 - R 100 -14.9 -3.18381 | opp_overlap 2143270 2143269 2143267 2143276, overlap 2143269 2143266 2143276 CAATACAAAACGACA CTAAAGGCTAGTTAC TTGTAATTT GTAACTAGCCTTTAG AATATTTTTAGTTTA TERM 2806 2143276 - 2143304 + r 79 -9 -3.73294 | opp_overlap 2143276 2143271 2143269 2143266, overlap 2143270 2143269 2143267 CAAAACGACACTAAA GGCTAGTTAC TTGTAATTT GTAACTAGCC TTTAGAATATTTTTA TERM 2807 2143304 - 2143276 - R 81 -9 -3.92694 | opp_overlap 2143270 2143269 2143267 2143276, overlap 2143271 2143269 2143266 CAAAACGACACTAAA GGCTAGTTAC TTGTAATTT GTAACTAGCC TTTAGAATATTTTTA CLH_1998 2146036 - 2143406 - | aldehyde-alcohol dehydrogenase 2 TERM 2808 2146196 - 2146240 + r 100 -14 -4.32034 | opp_overlap 2146190 2146199 2146225 AATTGAAATTTTTAA GTACCCTATAAAATAGAT AATAAAAAA GTCTATTTTATAGGGTAC TTTTACTAGTAATAA TERM 2809 2146237 - 2146199 - R 75 -9.2 -2.74514 | opp_overlap 2146196, overlap 2146190 2146225 TGAAATTTTTAAGTA CCCTATAAAATAGA TAATAAAAAAG TCTATTTTATAGGG TACTTTTACTAGTAA CLH_1999 2147297 - 2146257 - | hypothetical protein TERM 2810 2147071 - 2147041 - G 71 -4.2 -5.03314 | overlap 2147042 TCTATTCCTAAAAAA CTAGCTATATCATT ATT AATTATATAACTAA CCTTTGATAGTGCAG TERM 2811 2147189 - 2147203 + g 82 -4.4 -5.60864 | overlap 2147172 TTAAAATTGATTTTT TAAAAT TGG ATTTTA TTTTTTTCCTCTCTA CLH_2000 2147856 - 2147302 - | RNA polymerase sigma-70 factor CLH_2001 2148147 - 2149613 + | polysaccharide biosynthesis protein TERM 2812 2149706 - 2149665 - T 95 -10.5 -4.18042 | CTTATATAAAGTAAA TACCATAAAAAGCAATC CTATTTTT AACTGCTTTTTATGGTA TAAATCAACACTTTA CLH_2002 2151012 - 2149765 - | hypothetical protein TERM 2813 2150463 - 2150441 - G 70 -8.6 -2.53876 | opp_overlap 2150441 2150439, overlap 2150447 TCTGATTCTAATTCA CCTAAATTTA AAT TAAATTCAGG TATATTAATAGCTAA CLH_2003 2152331 - 2151054 - | hypothetical protein TERM 2814 2151607 - 2151577 - G 83 -9.8 -3.28924 | opp_overlap 2151577 GATTTTCCCTTATAA GTTCCCTTGATCTC TTT GTGATCAAAAGAAC TGCTTGCTGATGGAT CLH_2004 2152514 - 2152939 + | hypothetical protein CLH_2005 2152926 - 2153369 + | hypothetical protein TERM 2815 2153375 - 2153404 + T 86 -9.5 -3.92522 | opp_overlap 2153375 TCTAAAATAAAAAAA CATTACTGGAA TTCATATT TTCCAGTAATG TTTCTAAAATTAAGA TERM 2816 2153404 - 2153375 - T 100 -9.5 -6.09196 | opp_overlap 2153375 TCTAAAATAAAAAAA CATTACTGGAA TTCATATT TTCCAGTAATG TTTCTAAAATTAAGA CLH_2006 2154132 - 2153485 - | FMN-dependent NADH-azoreductase family protein TERM 2817 2154244 - 2154204 - R 77 -7.9 -4.06765 | opp_overlap 2154202 ATACATAAAACAGAA TTGTTATTAAGTTATTTTC TAT AAAGGTAACTTAATAACAA CCTTAGCTCCACCCA CLH_2007 2155583 - 2154222 - | subtilin biosynthesis sensor protein SpaK TERM 2818 2155286 - 2155296 + g 73 -5.4 -4.81212 | TAATCATTTTCCATA TTCC TAG GGAA TTTTCTTCTGATACA TERM 2819 2155535 - 2155558 + g 78 -2.4 -5.85425 | opp_overlap 2155528 2155536 2155538, overlap 2155536 AAAATGTAGCTATAT ACATAGCAAA TATC TTAGCTATGC TTTTTTGTTTCTTTA CLH_2008 2156233 - 2155571 - | subtilin biosynthesis regulatory protein SpaR CLH_2009 2157019 - 2156261 - | lantibiotic transport-associated permease SpaG/mutG TERM 2820 2156590 - 2156578 - G 71 -2.7 -5.4433 | ATAGATAAAGAAAAA TTTGA CTT CCAAA TATAATTACAGTTTG CLH_2010 2157772 - 2157026 - | lantibiotic permease protein SpaE/mutE TERM 2821 2157721 - 2157738 + g 77 -2.1 -5.9218 | overlap 2157722 ACCATACAAGTTTAT TTAAAAA TGTA TTTTTAG TTTTTTTATTCTCTG CLH_2011 2158480 - 2157776 - | bacitracin transport ATP-binding protein BcrA CLH_2012 2159309 - 2158569 - | hypothetical protein TERM 2822 2159230 - 2159249 + g 75 -3.7 -5.44638 | ATTTCTCCATTTATG TCTATTT TTATAC AAATAGA TTTTCTTTTTCTTCT TERM 2823 2159398 - 2159373 - R 78 -6.3 -4.95876 | opp_overlap 2159373 AAGTATAACTAAAAA GTCAGTAAT AATTTTAA ATTACTGAC TTTTTGTTCCTCGTA TERM 2824 2159373 - 2159398 + r 80 -6.3 -5.15167 | opp_overlap 2159373 AAGTATAACTAAAAA GTCAGTAAT AATTTTAA ATTACTGAC TTTTTGTTCCTCGTA CLH_2013 2159699 - 2159391 - | hypothetical protein CLH_2014 2160292 - 2160122 - | flavodoxin TERM 2825 2160612 - 2160628 + H 71 -6.7 -4.02119 | opp_overlap 2160612 2160625, overlap 2160610 TACTATAAGAATAAA CTAATTT TTT AAATTAG TATTTTATTCTAATA TERM 2826 2160628 - 2160612 - H 75 -6.7 -4.53419 | opp_overlap 2160612 2160610, overlap 2160625 TACTATAAGAATAAA CTAATTT TTT AAATTAG TATTTTATTCTAATA CLH_2015 2160691 - 2160963 + | hypothetical protein TERM 2827 2160981 - 2161011 + T 100 -18.6 -5.74684 | opp_overlap 2160981 TTAAACTTAGAAAAA TGAGTGTAGTAAGT ACT ACTTACTACACTCA TTTTTATTTTTCTTA TERM 2828 2161011 - 2160981 - T 100 -18.6 -4.94992 | opp_overlap 2160981 TTAAACTTAGAAAAA TGAGTGTAGTAAGT ACT ACTTACTACACTCA TTTTTATTTTTCTTA CLH_2016 2162071 - 2161070 - | putative surface antigen TERM 2829 2161284 - 2161298 + g 74 -8.6 -3.21064 | overlap 2161282 2161280 CTTTGTTGATCTTGT GATACC CTT GGTATC TCTATTCCTTGTGAA TERM 2830 2162257 - 2162244 - R 70 -2.5 -5.4833 | TTACTTAATAAAAAA TTATA ATTT TATAA AGAACAAACTCTCCA TERM 2831 2162477 - 2162447 - R 100 -12.8 -5.03145 | opp_overlap 2162454, overlap 2162454 TAATTTTCTAAAAAA TAAAAAAGTGGCTA ATA TAGCCACTTTCCTA AAAATCTTATGAATT TERM 2832 2162454 - 2162470 + r 95 -10.9 -3.74519 | opp_overlap 2162454 2162447 CTAAAAAATAAAAAA GTGGCTA ATA TAGCCAC TTTCCTAAAAATCTT TERM 2833 2162470 - 2162454 - R 100 -10.9 -6.04324 | opp_overlap 2162454, overlap 2162447 CTAAAAAATAAAAAA GTGGCTA ATA TAGCCAC TTTCCTAAAAATCTT CLH_2017 2162898 - 2162524 - | hypothetical protein CLH_2018 2163264 - 2163524 + | hypothetical protein TERM 2834 2163582 - 2163614 + F 100 -8.5 -5.9362 | opp_overlap 2163582 ATAATCATTATTAAA GTCTCAGACTATGTT AGT AAAGCAGTCTGAGAC TTTTTTTATATTTTC TERM 2835 2163614 - 2163582 - f 76 -8.5 -3.82433 | opp_overlap 2163582 ATAATCATTATTAAA GTCTCAGACTATGTT AGT AAAGCAGTCTGAGAC TTTTTTTATATTTTC TERM 2836 2164177 - 2164154 - g 71 -2.4 -5.42259 | overlap 2164156 2164158 GTATGTGTAAAAAAA GATAGCTTTG TAAA CAAAGCAATT GAACGTAAAAATTCA TERM 2837 2164173 - 2164158 - g 73 -7.6 -3.76885 | overlap 2164156 2164154 GTGTAAAAAAAGATA GCTTTG TAAA CAAAGC AATTGAACGTAAAAA CLH_2019 2163800 - 2164195 + | thioesterase family protein TERM 2838 2164236 - 2164275 + T 100 -7.5 -5.43621 | gap 1, opp_overlap 2164236 TTATTTAACCAAGAA GAGACTAAC-AATTAATT TTTTT AATTATTTCGTTAGTCTC TTTTTTATCCTTTAT TERM 2839 2164275 - 2164236 - T 73 -7.5 -3.82604 | gap 1, opp_overlap 2164236 TTATTTAACCAAGAA GAGACTAAC-AATTAATT TTTTT AATTATTTCGTTAGTCTC TTTTTTATCCTTTAT TERM 2840 2164398 - 2164376 - T 88 -4.9 -5.87996 | opp_overlap 2164376 TAAGGAATAAAAAAA CTGTTGC ATTGTATTA GCAACAG TTCTAAAATCTTTTC CLH_2020 2165246 - 2164425 - | hypothetical protein TERM 2841 2164872 - 2164884 + g 73 -9.1 -2.61728 | overlap 2164871 TAATGTTACTGCTGC GCCAG TTG CTGGC ATTCCTGTTAAAAAT TERM 2842 2165344 - 2165323 - R 93 -7.3 -5.64321 | opp_overlap 2165323 2165318 AGAATAAAACAAAAA GCAGAGCCT TCCC AAACTCTGC TTTTCCTTTTGTATT CLH_2021 2166440 - 2165439 - | hypothetical protein TERM 2843 2166206 - 2166220 + g 70 -5 -4.74012 | GTGATATTTCTTTAT TGTCGT TTA ATGACA TTTTCATTTTATCAT CLH_2022 2166921 - 2166424 - | RNA polymerase sigma-70 factor TERM 2844 2166672 - 2166690 + g 79 -6.8 -4.78512 | CTTGAAACTCTTCTC TCTTTTTG AAC CAAGAAGA TTTTAATTTATTTTT TERM 2845 2167183 - 2167147 - R 100 -12.7 -4.371 | opp_overlap 2167147 TTCATTATACTAAAA TAAGCTATATTATTG AAAAAAA CAATAATATAGCTTA TTTTTAATTAAATAA TERM 2846 2167147 - 2167183 + r 100 -12.7 -4.88407 | opp_overlap 2167147 TTCATTATACTAAAA TAAGCTATATTATTG AAAAAAA CAATAATATAGCTTA TTTTTAATTAAATAA CLH_2023 2168311 - 2167220 - | ribose-phosphate pyrophosphokinase CLH_2024 2168713 - 2169261 + | ribosomal protein L25, Ctc-form CLH_2025 2169501 - 2170046 + | ribosomal protein L25, Ctc-form CLH_2026 2172097 - 2170340 - | ATP-dependent RNA helicase, superfamily II TERM 2847 2172269 - 2172248 - H 72 -8.9 -2.66435 | overlap 2172251 ACTTTTATTATATCA CAATTAAGA ATTT TCTTAATTG AAGGCTATATAAACT CLH_2027 2172475 - 2173233 + | hypothetical protein TERM 2848 2173365 - 2173414 + T 70 -6 -4.2717 | gap 1, opp_overlap 2173377, overlap 2173377 AATTCTACAATTTTC TATAT-ATGAAAAGGGAGCCACT CTATT AGTAGCTCCCTTTAAATTATATA TTTTCATGCAATAAT TERM 2849 2173401 - 2173377 - T 100 -12.2 -4.39166 | opp_overlap 2173377 2173365 TTCTATATATGAAAA GGGAGCCACT CTATT AGTAGCTCCC TTTAAATTATATATT TERM 2850 2173377 - 2173401 + T 93 -10 -3.84996 | opp_overlap 2173377, overlap 2173365 TTCTATATATGAAAA GGGAGCCACT CTATT AGTAGCTCCC TTTAAATTATATATT aroD 2174187 - 2173408 - | 3-dehydroquinate dehydratase, type I CLH_2029 2174635 - 2174237 - | hypothetical protein pepT 2175897 - 2174677 - | peptidase T TERM 2851 2175557 - 2175579 + g 71 -8.6 -2.90078 | overlap 2175556 2175562 TTTGGAAATCTTTCT GGAGATAATA TGC TATTATTTCC CTTTAATATAACATC CLH_2031 2177910 - 2176135 - | hypothetical protein CLH_2032 2178464 - 2178709 + | hypothetical protein TERM 2852 2178847 - 2178810 - T 100 -8.6 -5.33026 | opp_overlap 2178810 TAATTCAAACAAAAA CTGCCCTAAATAGATT GTTAAT AATCCTTTTAAGGCAG TTTACATTATATATA CLH_2033 2180236 - 2178872 - | surface protective antigen SpaB TERM 2853 2180571 - 2180549 - H 73 -7.2 -4.09511 | opp_overlap 2180549 AATATTTTCCTAAAA CTTATAATAT GCT ATACTATAAG TTGTTATAAACTGAC TERM 2854 2181144 - 2181128 - g 72 -5.9 -4.62069 | opp_overlap 2181120, overlap 2181120 AAAAACATTATAAAA TAATTGC TGA GCAATCA AATAATATACTTTTT TERM 2855 2181440 - 2181424 - g 86 -5.9 -5.47159 | TTTGAAGATAAAAAA CCAATTA AAG CAATTGG AAATATAGTAGATAT TERM 2856 2181783 - 2181762 - g 70 -3.1 -5.25803 | AATTTTTATAAAAAA TATTAGTTC ATAT GAAGTAATA TCTCAAAAAGCAAAT CLH_2034 2180665 - 2184213 + | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor TERM 2857 2184196 - 2184224 + F 74 -8.2 -3.47542 | opp_overlap 2184203, overlap 2184203 GAAAAAAGATTATGG GGACAAAGTGGC ATTTA GCCACTTTTTTC TATTTAAATATTATC TERM 2858 2184203 - 2184217 + F 91 -7.1 -5.56264 | opp_overlap 2184203, overlap 2184196 GATTATGGGGACAAA GTGGC ATTTA GCCAC TTTTTTCTATTTAAA TERM 2859 2184217 - 2184203 - f 71 -7.1 -3.88291 | opp_overlap 2184196 2184203 GATTATGGGGACAAA GTGGC ATTTA GCCAC TTTTTTCTATTTAAA TERM 2860 2186301 - 2186277 - g 70 -5.1 -4.74103 | GTCCCAATTTAAAAA CCACATTTC CAAATGC AAAATGTGG TGACGTATGTTATAA CLH_2035 2184638 - 2187784 + | MorA TERM 2861 2187876 - 2187818 - f 100 -10.1 -5.84381 | opp_overlap 2187821 2187822, overlap 2187821 2187822 2187874 TCATTAATAAAAAAA CAACCTTTATAGTAGGTATAAAAGT TCTCATATG ATTTTTATACCTACTATAAAGATTT CTATTTTATAAAAAC TERM 2862 2187873 - 2187821 - f 100 -11.8 -4.96435 | opp_overlap 2187821 2187822, overlap 2187818 2187822 TTAATAAAAAAACAA CCTTTATAGTAGGTATAAAAGT TCTCATATG ATTTTTATACCTACTATAAAGA TTTCTATTTTATAAA TERM 2863 2187821 - 2187873 + F 100 -13.9 -4.51238 | opp_overlap 2187821 2187818 2187822, overlap 2187822 TTAATAAAAAAACAA CCTTTATAGTAGGTATAAAAGTTCT CAT ATGATTTTTATACCTACTATAAAGA TTTCTATTTTATAAA TERM 2864 2187822 - 2187872 + F 100 -17.4 -3.29658 | opp_overlap 2187822 2187821 2187818, overlap 2187821 TAATAAAAAAACAAC CTTTATAGTAGGTATAAAAGTTCT CAT ATGATTTTTATACCTACTATAAAG ATTTCTATTTTATAA TERM 2865 2187872 - 2187822 - f 100 -13.1 -3.55421 | opp_overlap 2187821 2187822, overlap 2187821 2187818 TAATAAAAAAACAAC CTTTATAGTAGGTATAAAAGT TCTCATATG ATTTTTATACCTACTATAAAG ATTTCTATTTTATAA CLH_2036 2188001 - 2188720 + | ExsB family protein TERM 2866 2188704 - 2188761 + T 100 -15.5 -3.54701 | opp_overlap 2188706 2188708, overlap 2188689 2188706 2188708 2188718 TTTTTATTTGGAATA AAGATTTAATTAAATGAGTATATTTCG TAAC TGAAATATACTCATTTAATTAAATATC TCTTATTCATTTATA TERM 2867 2188706 - 2188759 + T 100 -18.1 -3.32936 | opp_overlap 2188706 2188708, overlap 2188689 2188704 2188708 2188718 TTTATTTGGAATAAA GATTTAATTAAATGAGTATATTTCG TAAC TGAAATATACTCATTTAATTAAATA TCTCTTATTCATTTA TERM 2868 2188759 - 2188706 - T 100 -17.4 -4.16842 | opp_overlap 2188689 2188706 2188704 2188708 2188718, overlap 2188708 TTTATTTGGAATAAA GATTTAATTAAATGAGTATATTTC GTAACT GAAATATACTCATTTAATTAAATA TCTCTTATTCATTTA TERM 2869 2188757 - 2188708 - T 100 -20 -3.68324 | opp_overlap 2188708 2188706 2188704 2188718, overlap 2188706 TATTTGGAATAAAGA TTTAATTAAATGAGTATATTTC GTAACT GAAATATACTCATTTAATTAAA TATCTCTTATTCATT TERM 2870 2188708 - 2188757 + T 100 -20.7 -3.21182 | opp_overlap 2188706 2188708, overlap 2188706 2188704 2188718 TATTTGGAATAAAGA TTTAATTAAATGAGTATATTTCG TAAC TGAAATATACTCATTTAATTAAA TATCTCTTATTCATT TERM 2871 2188718 - 2188747 + T 100 -11.7 -3.95148 | opp_overlap 2188708 2188706, overlap 2188708 2188706 2188704 AAAGATTTAATTAAA TGAGTATATTTCG TAAC TGAAATATACTCA TTTAATTAAATATCT CLH_2037 2189422 - 2188799 - | hypothetical protein CLH_2038 2189842 - 2190450 + | hypothetical protein sfsA 2190482 - 2191174 + | sugar fermentation stimulation protein TERM 2872 2191244 - 2191196 - T 71 -6.6 -4.03995 | opp_overlap 2191200, overlap 2191194 2191200 CTTTTTATAAAAATA TGAAGACTATAATAAACTT-GTAT TTT ACACAAAATTTATTATAGTCTT-A TCAGTTAACTTTAGT TERM 2873 2191241 - 2191200 - T 89 -9.9 -3.64205 | gap 1, opp_overlap 2191200, overlap 2191196 2191194 TTATAAAAATATGAA GACTATAATAAACTT-GTAT TTT ACACAAAATTTATTATAGTC TTATCAGTTAACTTT CLH_2040 2191731 - 2191327 - | arsenate reductase CLH_2041 2192085 - 2191759 - | arsenical resistance operon repressor TERM 2874 2192620 - 2192635 + H 72 -7.6 -3.64523 | GAAATATTAGTATTT CTAGCA TTTC TGCTAG TTATCATTTGGTATT CLH_2042 2192723 - 2193175 + | GnaT-family acetyltransferase TERM 2875 2193190 - 2193167 - T 100 -11.2 -5.53079 | opp_overlap 2193169 AAAATATACAAAAAA GAGTTATAAG AAAG CTTATAACTC TTAAAAATCACAAAT CLH_2043 2193360 - 2193205 - | hypothetical protein TERM 2876 2193555 - 2193504 - R 100 -19.2 -2.89668 | opp_overlap 2193504 2193502 2193511, overlap 2193494 2193511 CAATATTTTTATAGA TAAAAAATCCCCTTTAGAGTAAAT AATC ATTCGCTCTAAAGGGGATTCTTTA TACTATTTATTTATT TERM 2877 2193504 - 2193555 + r 100 -17 -3.01118 | opp_overlap 2193494 2193504 2193511, overlap 2193502 2193511 CAATATTTTTATAGA TAAAAAATCCCCTTTAGAGTAAAT AATC ATTCGCTCTAAAGGGGATTCTTTA TACTATTTATTTATT TERM 2878 2193511 - 2193548 + r 100 -15.1 -4.15881 | opp_overlap 2193504 2193511, overlap 2193504 2193502 TTTATAGATAAAAAA TCCCCTTTAGAGTAAAT AATC ATTCGCTCTAAAGGGGA TTCTTTATACTATTT TERM 2879 2193548 - 2193511 - R 100 -15.1 -5.4251 | opp_overlap 2193511 2193504 2193502, overlap 2193504 TTTATAGATAAAAAA TCCCCTTTAGAGTAAAT AATC ATTCGCTCTAAAGGGGA TTCTTTATACTATTT CLH_2044 2195454 - 2193562 - | heat-responsive suppressor HrsA pfkB 2196378 - 2195476 - | 1-phosphofructokinase CLH_2046 2197126 - 2196371 - | fructose repressor TERM 2880 2197589 - 2197562 - R 78 -5.7 -5.1925 | opp_overlap 2197562 2197561 GTACAAGTCAAAAAA GGATGTATCAA AAAAAA TTGATATATCC CTTTATTAAAAGTAA CLH_2047 2198507 - 2197812 - | PHP domain protein CLH_2048 2199997 - 2198639 - | mate efflux family protein TERM 2881 2200132 - 2200088 - R 79 -9 -3.55582 | gap 1, opp_overlap 2200090 2200095, overlap 2200090 2200095 ACAATATTTATACAA CACAAAACATGGCAA-AATTT AAAC AAATCATTGCCATGTTTTATA TTGCATCCCTTAATA TERM 2882 2200130 - 2200090 - R 82 -9.4 -3.3464 | gap 1, opp_overlap 2200090 2200095, overlap 2200088 2200095 AATATTTATACAACA CAAAACATGGCAA-AATTT AAAC AAATCATTGCCATGTTTTA TATTGCATCCCTTAA TERM 2883 2200125 - 2200095 - R 81 -7.1 -4.76963 | gap 1, opp_overlap 2200090 2200095, overlap 2200090 2200088 TTATACAACACAAAA CATGGCAA-AATTT AAAC AAATCATTGCCATG TTTTATATTGCATCC CLH_2049 2200763 - 2200215 - | putative phosphoglycerate mutase family protein TERM 2884 2201147 - 2201122 - R 100 -12.1 -6.32017 | AATAAACAAAAAAAA GTGTTTCAAAA ATAA TTTTGAAACAC ACACTCAAAATAATA CLH_2050 2202970 - 2201273 - | periplasmic [Fe] hydrogenase 1 TERM 2885 2202556 - 2202582 + g 86 -6 -5.48054 | opp_overlap 2202556 TCGGATCACGAACTA TTGATTTAGATG AGG TATCTAATTCAA TTTTTTCATTTTCAT CLH_2051 2204893 - 2203013 - | putative iron hydrogenase, electron-transfer subunit CLH_2052 2205374 - 2204883 - | Fe-hydrogenase gamma subunit TERM 2886 2205212 - 2205227 + g 70 -6.2 -4.16943 | CATATATTTTTGCTT CACTTA TCTT TAAGTG TTTTGCAATATAACA TERM 2887 2205592 - 2205604 + r 77 -3.5 -5.66229 | opp_overlap 2205585, overlap 2205585 AGCACACATTTTACT TATTT GTA AAATA TTTTTTCTTATTACT TERM 2888 2205651 - 2205678 + r 83 -6.4 -5.24989 | gap 1, opp_overlap 2205651 CTAATTAATTGAAAA GAGAC-GAAAGTA ATT TTCTTTCCGTCTC TTTTTTAATATATAA TERM 2889 2205678 - 2205651 - R 73 -6.4 -4.32201 | gap 1, opp_overlap 2205651 CTAATTAATTGAAAA GAGAC-GAAAGTA ATT TTCTTTCCGTCTC TTTTTTAATATATAA CLH_2053 2205899 - 2205747 - | hypothetical protein TERM 2890 2206699 - 2206683 - g 74 -2.3 -5.65927 | TACTTAAAGAAAAAA TTGAATG TGG CATTGAA GTTAGATTATTGGTT CLH_2054 2206196 - 2207623 + | cardiolipin synthetase TERM 2891 2207624 - 2207652 + F 77 -4.9 -5.35222 | opp_overlap 2207627 TCCCCTATTCTCTAA TAATAAAAAAA ATAATTA TTTTTTTATTA TTTTTTCTAAATTTT TERM 2892 2208303 - 2208323 + G 81 -8.3 -4.26351 | opp_overlap 2208307, overlap 2208307 TTTGCAGTCTCTATA GGAAGTGGC CTT GCTACTTTC TTTATTGCATTAATA TERM 2893 2208307 - 2208319 + G 73 -5.5 -4.70117 | opp_overlap 2208307, overlap 2208303 CAGTCTCTATAGGAA GTGGC CTT GCTAC TTTCTTTATTGCATT CLH_2055 2207730 - 2208920 + | hypothetical protein TERM 2894 2208959 - 2208935 - T 100 -13.7 -5.14965 | opp_overlap 2208935 ATTTTTACTAAAAAA GATATCCTGGG AAA CCCAAGATATC TTTTTTTATTTCTTA TERM 2895 2208935 - 2208959 + T 100 -11.5 -6.08342 | opp_overlap 2208935 ATTTTTACTAAAAAA GATATCCTGGG AAA CCCAAGATATC TTTTTTTATTTCTTA CLH_2056 2210070 - 2208988 - | lysophospholipase l2 pldb, hydrolase of alpha/beta superfamily TERM 2896 2210421 - 2210464 + r 100 -20.2 -5.03747 | opp_overlap 2210412 2210421 2210424 TATATATATATTTAA TAATACCCTATTTAATATAA AAAA TTATATTAAATAGGGTATTA TTTTTTAGAGAATTT TERM 2897 2210464 - 2210421 - R 100 -20.2 -3.18511 | opp_overlap 2210421, overlap 2210412 2210424 TATATATATATTTAA TAATACCCTATTTAATATAA AAAA TTATATTAAATAGGGTATTA TTTTTTAGAGAATTT TERM 2898 2210461 - 2210424 - R 100 -17.5 -3.72632 | opp_overlap 2210421, overlap 2210412 2210421 ATATATATTTAATAA TACCCTATTTAATATAA AAAA TTATATTAAATAGGGTA TTATTTTTTAGAGAA CLH_2057 2211072 - 2210524 - | acetyltransferase, gnat family TERM 2899 2211238 - 2211272 + r 100 -16 -2.69869 | opp_overlap 2211243, overlap 2211243 TAACTAATATATATT AAAAAGCTTATATGCC CAA GGCATATAAGCTTTTA TACGTTTCATATCAT TERM 2900 2211267 - 2211243 - R 100 -15.9 -4.87037 | opp_overlap 2211243 2211238 AATATATATTAAAAA GCTTATATGCC CAA GGCATATAAGC TTTTATACGTTTCAT TERM 2901 2211243 - 2211267 + r 100 -15.9 -4.51799 | opp_overlap 2211243, overlap 2211238 AATATATATTAAAAA GCTTATATGCC CAA GGCATATAAGC TTTTATACGTTTCAT CLH_2058 2212662 - 2211340 - | amino acid permease TERM 2902 2212444 - 2212456 + g 70 -7.7 -3.42395 | overlap 2212454 ATATTGATACGCTCC TCCAG TAG CTGGA TATTTAGATCCTAAA CLH_2059 2213422 - 2212961 - | glutathione-regulated potassium-efflux system protein TERM 2903 2213643 - 2213589 - R 70 -7.6 -3.32941 | opp_overlap 2213598, overlap 2213598 TAAAACATAACTTAA TTATAAAAATAGCTGTGTTTAA TCTTAATGATT TTTAACACAGCTATTATTATAA ATGAATAGTTAAAAA CLH_2060 2214899 - 2213661 - | dihydroorotate dehydrogenase family protein TERM 2904 2214688 - 2214698 + g 73 -5.4 -4.66987 | opp_overlap 2214688 TTAAAACCAACAAAT GAAG TTG CTTC TTTTCTTAAACTATC CLH_2061 2216170 - 2214899 - | hypothetical oxidoreductase YeiT TERM 2905 2216473 - 2216434 - R 100 -14.6 -5.18643 | opp_overlap 2216447 TTAATCAAAACAAAA CTGCCTATTAAATTAACA ATTA TGTTATTCTAATAGGCAG CCCACTTCACTTTAA TERM 2906 2216713 - 2216738 + r 75 -6.4 -4.53047 | ACCTCCGAAATTCTT TATATTTCTA ATTTTA TAGAAATATA TTTATTATCTTTAGT TERM 2907 2217138 - 2217100 - R 100 -7.8 -6.20267 | opp_overlap 2217104 TGAAAAACAAAAAAA TCTATATGTTTGTT TTTTACGATCT AACAAACATATAGA TTACACTAAGTACTT CLH_2062 2218381 - 2217260 - | hypothetical protein CLH_2063 2219050 - 2218388 - | sigma factor SgiI TERM 2908 2219352 - 2219321 - R 93 -9.7 -4.39166 | TTGTAGACATCAAAA TATTACTAGAACT AATTAA AGTCCTAGTAATA CACTGATTCACGTAT CLH_2064 2220466 - 2219414 - | hypothetical protein TERM 2909 2220002 - 2220014 + g 78 -7.7 -4.28762 | TGCTGTACATTTTTC TCCAG TTT CTGGA TTTTCATAGCATTCT TERM 2910 2221394 - 2221374 - g 74 -8.4 -3.30218 | opp_overlap 2221370 2221369 2221375 2221376 GACAATACAATTTAA CATCATCA TTACT TGATGATG AGTTAACTATTGATG CLH_2065 2220653 - 2221930 + | hypothetical protein TERM 2911 2222530 - 2222500 - g 71 -2.8 -5.52986 | opp_overlap 2222528 ATCCCACTAAAAAAA CTGTAATAAT TGGTAAAATAG ATTATTACAG TTCAACTGTTCATTC CLH_2066 2221977 - 2226230 + | hypothetical protein TERM 2912 2226316 - 2226280 - T 100 -13.3 -5.24799 | opp_overlap 2226280 TTATAAACAGAAAAA GATCTAAAGTAACAAGA TAT TACTGTTACTTTAGATC TTTATTATTATAATT TERM 2913 2226280 - 2226316 + T 100 -11.2 -4.54323 | opp_overlap 2226280 TTATAAACAGAAAAA GATCTAAAGTAACA AGATATTAC TGTTACTTTAGATC TTTATTATTATAATT CLH_2067 2226939 - 2226331 - | putative ribonuclease CLH_2068 2228260 - 2227211 - | hypothetical protein TERM 2914 2227796 - 2227808 + g 78 -7.7 -4.28762 | TGCTGTACATTTTTC TCCAG TTT CTGGA TTTTCATAGCATTCT CLH_2069 2231627 - 2228475 - | hypothetical ATP-dependent helicase TERM 2915 2231171 - 2231161 - G 71 -4 -5.14563 | CTTCCTATGAAAAAA TTTG CTT CAAA ATAATCTCCATTTTT TERM 2916 2231689 - 2231658 - R 71 -7.4 -3.97019 | AGCAATCCTAAATAA GCCTAAATAATCCA ACAT TGGTTTACTTAAGC AAATTATAAATATTA TERM 2917 2231743 - 2231708 - R 77 -7 -4.53036 | gap 1 TTATAAATATTAAAA GGAGCTTAGAG-ACC GGCGAAG GACACTCTAAGCTCC GTAATTAGCACTTTC CLH_2070 2232352 - 2231834 - | molecular chaperone, DnaJ family recQ 2234981 - 2232543 - | ATP-dependent DNA helicase RecQ TERM 2918 2233368 - 2233380 + g 78 -7.7 -4.37658 | opp_overlap 2233368 TCCAAATATAACGTA TGGAG GTA CTCCA TTTTCTACAGAAATT TERM 2919 2235332 - 2235364 + r 100 -15.2 -3.98747 | opp_overlap 2235332 2235336 2235340 ATATAAACTTTATAA GGAATCAACTAAAA ATACC TTTTAGTTGATTCC TTTGCTCATTTTTTA TERM 2920 2235364 - 2235332 - R 100 -15.9 -3.41528 | opp_overlap 2235332, overlap 2235336 2235340 ATATAAACTTTATAA GGAATCAACTAAAAA TAC CTTTTAGTTGATTCC TTTGCTCATTTTTTA TERM 2921 2235360 - 2235336 - R 82 -9.5 -3.46234 | opp_overlap 2235332, overlap 2235332 2235340 AAACTTTATAAGGAA TCAACTAAAAA TAC CTTTTAGTTGA TTCCTTTGCTCATTT CLH_2072 2236177 - 2235380 - | lysozyme M1 CLH_2073 2236500 - 2236234 - | hypothetical protein CLH_2074 2236794 - 2236543 - | phage holin TERM 2922 2236912 - 2236933 + r 75 -7.5 -3.85698 | opp_overlap 2236899 2236914, overlap 2236917 AATTTAGTTCTCTAA TATAATATG AAGT CATATTATA TTTGTACACCAAAAA TERM 2923 2236951 - 2236980 + r 100 -13.9 -3.81951 | opp_overlap 2236951 TGTACACCAAAAAAA CGAATCAAAATTA TAAT TAATTTTGATTCG TTTAATAATATAGCA TERM 2924 2236980 - 2236951 - R 100 -13.9 -5.58454 | opp_overlap 2236951 TGTACACCAAAAAAA CGAATCAAAATTA TAAT TAATTTTGATTCG TTTAATAATATAGCA CLH_2075 2237179 - 2237012 - | hypothetical protein TERM 2925 2237356 - 2237304 - R 79 -3.8 -5.72616 | gap 1 ATTTATATAAAAAAA GTCACTAATTTAAATTTC-TAAATC TTAC GATTAAAGAAAAATAAATTAATGAC TTTATTGTAGAATCA CLH_2076 2238555 - 2237503 - | YkwD protein TERM 2926 2238859 - 2238897 + r 73 -7.6 -3.79295 | opp_overlap 2238860, overlap 2238857 2238860 2238889 TTTACATATAAGGAA ATGGCTATATTACTTATA TCA TAATAGTAATATAGCCAC TGTATTTTTTTCATA TERM 2927 2238896 - 2238860 - R 100 -11.1 -4.06361 | opp_overlap 2238860 2238859 2238857 2238889 TTACATATAAGGAAA TGGCTATATTACTTATA TCA TAATAGTAATATAGCCA CTGTATTTTTTTCAT TERM 2928 2238860 - 2238896 + r 85 -11.1 -2.8595 | opp_overlap 2238860, overlap 2238859 2238857 2238889 TTACATATAAGGAAA TGGCTATATTACTTATA TCA TAATAGTAATATAGCCA CTGTATTTTTTTCAT TERM 2929 2238889 - 2238901 + r 70 -2.7 -5.62219 | opp_overlap 2238860, overlap 2238860 2238859 2238857 ATATCATAATAGTAA TATAG CCA CTGTA TTTTTTTCATATATT nifJ 2242458 - 2238940 - | pyruvate:ferredoxin (flavodoxin) oxidoreductase CLH_2078 2242870 - 2243277 + | hypothetical protein TERM 2930 2243321 - 2243279 - T 100 -20.3 -4.05446 | opp_overlap 2243283, overlap 2243283 TTCTTCAAGGATAAA TAAAGGCACTTCAAATAGC AAATA ACTATTTGAAGTGCCTTTA TAATAATATTATCTT TERM 2931 2243283 - 2243317 + T 100 -16 -4.01853 | opp_overlap 2243283 2243279 TCAAGGATAAATAAA GGCACTTCAAATAG CAAATAA CTATTTGAAGTGCC TTTATAATAATATTA TERM 2932 2243317 - 2243283 - T 100 -16.7 -4.62622 | opp_overlap 2243283, overlap 2243279 TCAAGGATAAATAAA GGCACTTCAAATAGC AAATA ACTATTTGAAGTGCC TTTATAATAATATTA CLH_2079 2244466 - 2243330 - | glycerate kinase CLH_2080 2245773 - 2244517 - | GntP family permease CLH_2081 2247003 - 2245939 - | sugar diacid utilization regulator TERM 2933 2247347 - 2247323 - R 70 -2.9 -5.59655 | TAAAGCAATAAAAAA TACAGGTACTC TAT AAACACCTATA TCTAAAAAATTAATC TERM 2934 2247376 - 2247424 + r 100 -22.3 -5.95539 | opp_overlap 2247357 2247379, overlap 2247379 TCCTATACTATTATA AAATTAAGAAGCTATAGAGATTT CTT AAATCTCTATAGCTTCTTAATTA TTTTTTTCTTTCAAC TERM 2935 2247379 - 2247421 + r 100 -24 -5.01858 | opp_overlap 2247357 2247379, overlap 2247376 TATACTATTATAAAA TTAAGAAGCTATAGAGATTT CTT AAATCTCTATAGCTTCTTAA TTATTTTTTTCTTTC TERM 2936 2247421 - 2247379 - R 100 -24 -4.49981 | opp_overlap 2247376 2247379, overlap 2247357 TATACTATTATAAAA TTAAGAAGCTATAGAGATTT CTT AAATCTCTATAGCTTCTTAA TTATTTTTTTCTTTC TERM 2937 2247491 - 2247514 + r 73 -7 -4.11048 | opp_overlap 2247487 CTACTAAGAACCCTA TATTTTATAA ACCT TTATAAAATA TTGTTATTATATTAT TERM 2938 2247591 - 2247569 - R 100 -12.2 -5.626 | opp_overlap 2247569 TACTGCATAAAAAAA GGTTATAAGA AAA TCTTATAACC TTTAAAAATCATAAA TERM 2939 2247569 - 2247591 + r 95 -12.2 -3.58343 | opp_overlap 2247569 TACTGCATAAAAAAA GGTTATAAGA AAA TCTTATAACC TTTAAAAATCATAAA CLH_2082 2247762 - 2247607 - | hypothetical protein TERM 2940 2247662 - 2247678 + g 73 -3 -5.38054 | gap 1, overlap 2247662 GCTGCACATCTTACA GG-TTCG TTGT CGAATCC TTTTTCTTTGTAGAA TERM 2941 2247691 - 2247723 + g 74 -8.6 -3.31515 | opp_overlap 2247694, overlap 2247682 2247694 TCCTTTTTCTTTGTA GAATTCTTGTTCTC CTACT GAGAATACGAATTC TTCTCCACAATCTTT CLH_2083 2249226 - 2247940 - | putative multidrug efflux pump, outer membrane protein TERM 2942 2248682 - 2248692 + g 71 -4 -5.04733 | overlap 2248687 TTAGATTCAATGTTG TCTT TTA AAGA TTTTATTTCTAATTC CLH_2084 2250477 - 2249281 - | putative ABC-2 type transporter TERM 2943 2249640 - 2249612 - G 70 -6.1 -4.08692 | overlap 2249614 TAACCTTGTTCAAAA TATGCAGCATT ATCTATA AATGCTGCAAA TACAAAACTTATTGC TERM 2944 2249638 - 2249614 - G 76 -8.7 -3.63922 | overlap 2249612 ACCTTGTTCAAAATA TGCAGCATT ATCTATA AATGCTGCA AATACAAAACTTATT CLH_2085 2251730 - 2250477 - | hypothetical protein CLH_2086 2252799 - 2251741 - | putative secretion protein HlyD family protein TERM 2945 2252773 - 2252783 + g 74 -2.6 -5.63374 | AAGTGTTGATGATAG TAAT GCA ATTA TTTTTTTAGTATTCA CLH_2087 2253312 - 2252827 - | transcriptional regulator, MarR family TERM 2946 2253326 - 2253384 + r 80 -8.1 -4.3155 | gap 1, opp_overlap 2253344 2253374, overlap 2253330 ACTATTTTCAACTCC -ATTTTATATCTTTTATAATTTAGTTAG CATG CTAATTAAATTATAAAAGATATATTATC CTTTTTTTCTTTTTT TERM 2947 2253330 - 2253379 + r 100 -19.3 -3.87851 | opp_overlap 2253344 2253374, overlap 2253326 TTTTCAACTCCATTT TATATCTTTTATAATTTAGTTAG CATG CTAATTAAATTATAAAAGATATA TTATCCTTTTTTTCT TERM 2948 2253475 - 2253518 + r 100 -17.8 -3.5594 | opp_overlap 2253475, overlap 2253478 AAATTCTATAGAAAA GAAGTCGTATTATAGTGATT TTTA AACCACTATAATGCGACTTC TTTGACCACTAAATT TERM 2949 2253518 - 2253475 - R 100 -17.8 -4.55721 | opp_overlap 2253475 2253478 AAATTCTATAGAAAA GAAGTCGTATTATAGTGATT TTTA AACCACTATAATGCGACTTC TTTGACCACTAAATT TERM 2950 2253478 - 2253515 + r 100 -13.7 -3.91716 | opp_overlap 2253475, overlap 2253475 TTCTATAGAAAAGAA GTCGTATTATAGTGATT TTTA AACCACTATAATGCGAC TTCTTTGACCACTAA CLH_2088 2254536 - 2253763 - | hypothetical protein TERM 2951 2254519 - 2254502 - G 76 -7 -4.26903 | TTTATCTTATTAAAA TCCAGC GTTTTA GCTGGA GAAATTACTACTAAC CLH_2089 2254814 - 2255803 + | oxidoreductase family protein CLH_2090 2255800 - 2257077 + | pyridine nucleotide-disulphide oxidoreductase family protein TERM 2952 2257090 - 2257139 + T 100 -12 -4.02707 | gap 1, opp_overlap 2257095, overlap 2257095 TAAAAATTAACAAAT AAAAATAGTCTGTTTAA-TTAAG AAAAA CTTAAATTAAACAGACTATTTTC TTATTTAAATATTTA TERM 2953 2257134 - 2257095 - T 100 -11.9 -5.48514 | gap 1, opp_overlap 2257095 2257090 ATTAACAAATAAAAA TAGTCTGTTTAA-TTAAG AAAAA CTTAAATTAAACAGACTA TTTTCTTATTTAAAT TERM 2954 2257095 - 2257134 + T 100 -11.9 -5.011 | gap 1, opp_overlap 2257095, overlap 2257090 ATTAACAAATAAAAA TAGTCTGTTTAA-TTAAG AAAAA CTTAAATTAAACAGACTA TTTTCTTATTTAAAT dacB 2258021 - 2257152 - | D-alanyl-D-alanine carboxypeptidase TERM 2955 2257209 - 2257222 + g 74 -2.5 -5.59879 | CGCAACTGTCTCTAG TATAT GATT ATATA TTTTTTGTGTTTGTG TERM 2956 2257980 - 2258001 + g 71 -4.5 -4.88129 | overlap 2258000 AAACATAATACTCAG TAACATTGT TATT ACTATGTTA TTTTTAATACTTTTT CLH_2092 2258177 - 2258743 + | hypothetical protein ytfJ 2258733 - 2259215 + | sporulation protein YtfJ TERM 2957 2259259 - 2259289 + T 100 -11.4 -4.7254 | opp_overlap 2259259 ACACATTAATTTAAA TGGGTGTATTAA TTAAACT TTAATACACCCA TTTTTAATAAAAAAT TERM 2958 2259289 - 2259259 - T 95 -11.4 -3.80189 | opp_overlap 2259259 ACACATTAATTTAAA TGGGTGTATTAA TTAAACT TTAATACACCCA TTTTTAATAAAAAAT scpB 2260000 - 2259407 - | segregation and condensation protein B CLH_2095 2260739 - 2259984 - | ScpA/B protein TERM 2959 2260936 - 2260895 - R 83 -3.1 -6.01369 | opp_overlap 2260899 2260900 2260927, overlap 2260901 TAAATAATAAAAAAA TATGAATTAAGGGAAGTTA AAAG TAACTTCCCTTAAAATTTA ATATATTATAAAGTT TERM 2960 2260899 - 2260932 + r 78 -8.3 -3.95449 | opp_overlap 2260895 2260901, overlap 2260900 2260927 TAATAAAAAAATATG AATTAAGGGAAGTTA AAAG TAACTTCCCTTAAAA TTTAATATATTATAA TERM 2961 2260900 - 2260931 + r 90 -11.8 -2.96546 | opp_overlap 2260895 2260901, overlap 2260899 2260927 AATAAAAAAATATGA ATTAAGGGAAGTTA AAAG TAACTTCCCTTAAA ATTTAATATATTATA TERM 2962 2260930 - 2260901 - R 100 -15.3 -3.73271 | opp_overlap 2260900 2260899 2260927, overlap 2260895 ATAAAAAAATATGAA TTAAGGGAAGTTA AAAG TAACTTCCCTTAA AATTTAATATATTAT CLH_2096 2262159 - 2260969 - | penicillin-binding protein DacF TERM 2963 2262324 - 2262300 - R 89 -4.4 -6.11243 | opp_overlap 2262300, overlap 2262287 ACTCAATAAAAAAAA CTGATACT ACTTTTATA AGTATCAG TTTTTTTATTTATAC TERM 2964 2262300 - 2262324 + r 89 -4.4 -6.02919 | opp_overlap 2262287 2262300 ACTCAATAAAAAAAA CTGATACT ACTTTTATA AGTATCAG TTTTTTTATTTATAC TERM 2965 2262736 - 2262779 + r 95 -13 -3.25282 | opp_overlap 2262734 2262746, overlap 2262746 CATGTAATAGATACT CTTATATAAATTAAAAGATA TTAA TATATTTTAATTTATATAAG TTGGTAATCGTTGGT TERM 2966 2262828 - 2262801 - R 95 -12.2 -3.53091 | gap 1, opp_overlap 2262801 ATCGTTGGTGGCAAA TGGGTGGCAA-AT TAA ATCTTGCCACCCA TTTTATTTATAATAG TERM 2967 2262801 - 2262828 + r 100 -12.2 -5.02323 | gap 1, opp_overlap 2262801 ATCGTTGGTGGCAAA TGGGTGGCAA-AT TAA ATCTTGCCACCCA TTTTATTTATAATAG CLH_2097 2263979 - 2262897 - | metallo beta-lactamase family protein TERM 2968 2264113 - 2264071 - R 72 -8.1 -3.1944 | gap 1, opp_overlap 2264076, overlap 2264076 ATTAAAATTACCCAA TAAAATAGAGGC-ATATAGA TTTT TCTATATTACCTCTATTTTT ATTATGTACATTATT TERM 2969 2264108 - 2264076 - R 83 -8 -4.69656 | gap 1, opp_overlap 2264076, overlap 2264071 AATTACCCAATAAAA TAGAGGC-ATATAGA TTTT TCTATATTACCTCTA TTTTTATTATGTACA TERM 2970 2264076 - 2264108 + r 78 -5.8 -5.24796 | gap 1, opp_overlap 2264076 2264071 AATTACCCAATAAAA TAGAGG-CATATAGA TTTT TCTATATTACCTCTA TTTTTATTATGTACA CLH_2098 2264412 - 2264191 - | hypothetical protein TERM 2971 2264617 - 2264666 + r 81 -8.8 -3.88946 | opp_overlap 2264622 2264625, overlap 2264620 2264625 AGATTGTATCACATA TAGAATAAGGTCAGTACATAGA ATTTAA TCTACGTACTGACCTTAAGTTA TTATTATATGGAATA TERM 2972 2264620 - 2264663 + r 79 -8.3 -4.06864 | opp_overlap 2264622 2264625, overlap 2264617 2264625 TTGTATCACATATAG AATAAGGTCAGTACATAGA ATTTAA TCTACGTACTGACCTTAAG TTATTATTATATGGA TERM 2973 2264661 - 2264622 - R 100 -17.5 -3.65656 | opp_overlap 2264620 2264617 2264625, overlap 2264625 GTATCACATATAGAA TAAGGTCAGTACATAGA ATTTAA TCTACGTACTGACCTTA AGTTATTATTATATG TERM 2974 2264658 - 2264625 - R 100 -14.8 -3.95183 | opp_overlap 2264625 2264620 2264617, overlap 2264622 TCACATATAGAATAA GGTCAGTACATAGA ATTTAA TCTACGTACTGACC TTAAGTTATTATTAT TERM 2975 2264625 - 2264658 + r 95 -12.6 -3.34232 | opp_overlap 2264622 2264625, overlap 2264620 2264617 TCACATATAGAATAA GGTCAGTACATAGA ATTTAA TCTACGTACTGACC TTAAGTTATTATTAT CLH_2099 2265576 - 2264698 - | DNA-methyltransferase TERM 2976 2265010 - 2265000 - G 78 -2.6 -5.86061 | GTGGATCAAAAAAAA TAAA ACT TTTA TGTGGCAATTTAGTT CLH_2100 2267227 - 2265638 - | hypothetical protein TERM 2977 2267398 - 2267431 + r 93 -11.1 -3.43261 | opp_overlap 2267398, overlap 2267393 TCTATAAAAAGAAAA GGGTAGCAAATAAGA TTTC TCCTATCTGCTACCC TTCCGTTTTCTAATT TERM 2978 2267431 - 2267398 - R 100 -15.5 -5.35224 | opp_overlap 2267393 2267398 TCTATAAAAAGAAAA GGGTAGCAAATAAGA TTTC TCCTATCTGCTACCC TTCCGTTTTCTAATT CLH_2101 2268154 - 2267480 - | N-acetylmuramoyl-L-alanine amidase TERM 2979 2268223 - 2268190 - R 87 -6.9 -5.28983 | opp_overlap 2268192, overlap 2268192 TTTAAAATATAAAAA TAGAGCAACTAAAAA TTAA TTTTTAGCTACTCTT TAATCTCTTTCTTTT TERM 2980 2268221 - 2268192 - R 89 -9.5 -4.25747 | opp_overlap 2268192, overlap 2268190 TAAAATATAAAAATA GAGCAACTAAAAA TTAA TTTTTAGCTACTC TTTAATCTCTTTCTT CLH_2102 2268632 - 2268216 - | toxin secretion/phage lysis holin TERM 2981 2268685 - 2268673 - R 91 -4.8 -6.15536 | opp_overlap 2268673, overlap 2268660 AAGCAACAAAAAAAA CACC TTACT GGTG CTTGATCTGCTGCTT CLH_2103 2268956 - 2268732 - | hypothetical protein CLH_2104 2269358 - 2269044 - | hypothetical protein CLH_2105 2270889 - 2269372 - | hypothetical protein TERM 2982 2270348 - 2270366 + g 72 -6.8 -4.16443 | overlap 2270363 TCTTTTATTTTAGTA CTAGCATT ATT AATGTTAG TTTCTAATTTACTAT CLH_2106 2272653 - 2270908 - | putative phage endopeptidase CLH_2107 2273324 - 2272650 - | putative phage tail component CLH_2108 2276810 - 2273340 - | tail tape measure protein TERM 2983 2273709 - 2273721 + g 75 -3.4 -5.5074 | TACTGCATCTCCAAC TGCA CTTGC TGCA TTTTTTATTCCATTA TERM 2984 2275439 - 2275459 + g 73 -7.7 -3.78953 | opp_overlap 2275439 TCATCATACTATTAA CATTATCTT GTA AAGGTAATG TTTCATCATAAGCAT TERM 2985 2275525 - 2275538 + g 72 -6.7 -4.2535 | opp_overlap 2275524 ACATTGTAATTAACT GATGC TAAC GCATC TTTTAAATCTAATGT TERM 2986 2275724 - 2275736 + g 70 -6.3 -4.07568 | opp_overlap 2275723 CAGCATCTAAACATT CAACT CCA AGTTG TTTTAACACACCGGC TERM 2987 2276865 - 2276845 - R 83 -6.1 -5.2894 | opp_overlap 2276845 AAATATAAAATAAAA GACTAGGTA AAA TTCCTAGCC TTTCTTAAATCTATT CLH_2109 2277123 - 2276860 - | hypothetical protein CLH_2110 2277449 - 2277126 - | hypothetical protein CLH_2111 2278033 - 2277452 - | hypothetical protein CLH_2112 2278356 - 2278036 - | hypothetical protein TERM 2988 2278140 - 2278158 + g 77 -3.2 -5.71295 | TTATTGATTTTTCTT TTAATAGA TCT TCAATTAA TTTTTCTTTTTCTCT CLH_2113 2278738 - 2278349 - | hypothetical protein CLH_2114 2279073 - 2278738 - | hypothetical protein CLH_2115 2279377 - 2279048 - | Gp6 protein CLH_2116 2280588 - 2279392 - | mAjor capsid protein a TERM 2989 2280250 - 2280230 - G 70 -6.3 -4.08767 | opp_overlap 2280223 2280230 2280225 GTCATGTTTTGAAAA TCAATCATT TCT AATAATTGA TGTTCTGCTCTCATA CLH_2117 2281379 - 2280588 - | peptidase S14, ClpP CLH_2118 2282529 - 2281381 - | phage portal protein, HK97 family TERM 2990 2281593 - 2281554 - G 100 -13.4 -3.56155 | gap 1, opp_overlap 2281552, overlap 2281552 CAGCAATACTAAATA TATCTATATGCTTGATATT AGT AATATCAA-CATATAGATA GCTGCCTTTAAAAAA TERM 2991 2282577 - 2282563 - R 83 -3.5 -6.09196 | opp_overlap 2282565 2282571, overlap 2282565 TCCAAAATAAAAAAA GCCCT TAATT AAGGC TTAATATGTGTAAAC CLH_2119 2284233 - 2282578 - | putative phage terminase, large subunit CLH_2120 2284768 - 2284214 - | hypothetical protein TERM 2992 2284628 - 2284638 + g 80 -4 -5.64274 | opp_overlap 2284628 TTCAGATACACCATA TTTC AAA GAAA TTTTTTTATAAGTCA CLH_2121 2285197 - 2284871 - | Gp54 protein CLH_2122 2285502 - 2285185 - | hypothetical protein CLH_2123 2286198 - 2285656 - | site-specific recombinase, phage integrase family TERM 2993 2286018 - 2286031 + g 74 -3.9 -5.19879 | CAGTTTTCTTCTCTC GTATA TCAA TATAC TTTTTATCTTTAACA CLH_2124 2286431 - 2286195 - | hypothetical protein TERM 2994 2286472 - 2286449 - R 100 -8.2 -5.45802 | opp_overlap 2286449 GCCTTAAAATAAAAA GCACATACAA TTAA CTGCATGTGC TCTTAAAATCTAAAT CLH_2125 2286615 - 2286475 - | hypothetical protein CLH_2126 2286998 - 2286609 - | hypothetical protein TERM 2995 2287097 - 2287115 + r 100 -9.6 -5.1523 | TAATTGGATGTGTAA GGTGTTCG TGA TGAACACC TTTTTATATTATAAA TERM 2996 2287454 - 2287465 + r 70 -4.4 -4.98522 | CCTCCACGTCTGGAG GTGT GCGC ACAC TTTTTATCTAGAATT TERM 2997 2287726 - 2287706 - R 71 -8.4 -3.09968 | opp_overlap 2287706 CATCTAATGTGAAGA CTTATAGC AATTA GCTATAAG TATGTGAATATAAAT CLH_2127 2288141 - 2287923 - | hypothetical protein TERM 2998 2288190 - 2288210 + r 70 -7.7 -3.40401 | opp_overlap 2288189, overlap 2288189 ATTCAATTACTAATT CAAATTTTC TAT GAGAATTTG CTTTTATAATTTTAT CLH_2128 2288352 - 2288167 - | hypothetical protein CLH_2129 2288584 - 2288372 - | hypothetical protein CLH_2130 2288981 - 2288715 - | hypothetical protein TERM 2999 2288927 - 2288942 + g 91 -10.4 -4.4017 | opp_overlap 2288925 CTTTTTTAATATATT GGGGGA TTTC TCCCCC TTTTATAAAAATTGC CLH_2131 2289161 - 2289006 - | hypothetical protein CLH_2132 2289280 - 2289167 - | hypothetical protein CLH_2133 2290208 - 2289342 - | phage protein TERM 3000 2289843 - 2289861 + g 100 -10.4 -4.67982 | TCTCTTCCCGATTTT TCGTGATA GGG TATCACGA TTTTCTTGGATAGGG TERM 3001 2290183 - 2290193 + g 75 -5.4 -4.9138 | overlap 2290178 TTGGCTGGAATTATT GCAT AAT ATGC TTTTATTTCACTCAT CLH_2134 2291475 - 2290324 - | ParB protein soj 2292215 - 2291460 - | SpoOJ regulator protein TERM 3002 2292272 - 2292251 - R 72 -8.8 -2.6187 | opp_overlap 2292253 2292255, overlap 2292247 2292255 ATAATTTATAATGGA GATACGGA TAGCCG TCCGTATC TTAAGCTATTGAACC TERM 3003 2292283 - 2292301 + r 100 -7.5 -5.82036 | opp_overlap 2292286 GTATCTTAAGCTATT GAACCTT TATAC AAGGTTC TTTTTTATTTGTTGT CLH_2136 2292449 - 2292306 - | hypothetical protein CLH_2137 2292685 - 2292437 - | DNA binding domain, excisionase family CLH_2138 2293129 - 2292698 - | putative prophage LambdaCh01, transcriptional regulator CLH_2139 2293212 - 2293099 - | hypothetical protein CLH_2140 2293460 - 2293266 - | hypothetical protein CLH_2141 2293596 - 2293940 + | DNA-binding protein TERM 3004 2293938 - 2293962 + T 100 -11.6 -4.90917 | opp_overlap 2293938 TATAAAGATAAAAAA TAAGGTGTTC TTCAT GAACACCTTA TTTTTAATTACATTT TERM 3005 2293962 - 2293938 - T 100 -11.6 -5.59879 | opp_overlap 2293938 TATAAAGATAAAAAA TAAGGTGTTC TTCAT GAACACCTTA TTTTTAATTACATTT CLH_2142 2295045 - 2293966 - | metallo beta-lactamase family protein TERM 3006 2294676 - 2294696 + g 72 -6.9 -4.24123 | TTGTATGAGTAACTT TTGGAGCAT AAA ATTCTCCAA TTTTAAAATTATTAA TERM 3007 2295145 - 2295177 + r 100 -8 -5.33331 | gap 1, opp_overlap 2295145 AATTGCCCAATAAAA TAGAGGT-GTATAGA TTTT TCTATATTACCTCTA TTTTTATTATGTTTA TERM 3008 2295177 - 2295145 - R 71 -5.8 -4.64334 | gap 1, opp_overlap 2295145 AATTGCCCAATAAAA TAGAGGT-GTATAGA TTTT TCTATATTACCTCTA TTTTTATTATGTTTA CLH_2143 2295689 - 2295201 - | cell wall binding repeat domain protein CLH_2144 2296026 - 2297078 + | hypothetical protein CLH_2145 2297154 - 2297486 + | ProFAR isomerase associated superfamily TERM 3009 2297517 - 2297482 - T 100 -10.6 -5.55698 | opp_overlap 2297482 TAGAATTCAAAAAAA TATAGGGTAGGTGTTC TTAA GAACATCTATCCTATA TTTTTATTATTTTTT TERM 3010 2297482 - 2297517 + T 100 -15 -5.54403 | opp_overlap 2297482 TAGAATTCAAAAAAA TATAGGGTAGGTGTTC TTAA GAACATCTATCCTATA TTTTTATTATTTTTT CLH_2146 2298052 - 2297513 - | hypothetical protein TERM 3011 2297715 - 2297731 + g 74 -6.7 -4.40221 | TTCTTAGGATTATCT GTAATTA CTA TAATTAC TTTTAAGTTTAATTT CLH_2147 2298440 - 2298063 - | hypothetical protein TERM 3012 2298686 - 2298668 - g 70 -7.6 -3.3672 | opp_overlap 2298666, overlap 2298666 2298663 AAAACATAATTAATA TTTTCAAT ATT ATTGAAAA GGAAAATATAGTTGT CLH_2148 2298649 - 2299146 + | hypothetical protein CLH_2149 2299251 - 2300399 + | phage integrase family protein TERM 3013 2300413 - 2300385 - T 100 -13.3 -4.58644 | overlap 2300376 AATCAAGAAGTAAAA CTTCCACCCAA TTAAATT TTGGGTGGAAG AATGGTGGAAGTTTA CLH_2150 2301359 - 2300481 - | tyrosine recombinase XerD spoIIM 2302112 - 2301480 - | stage II sporulation protein M TERM 3014 2302301 - 2302277 - R 100 -10.2 -5.42131 | opp_overlap 2302276 2302275 2302300 TAATTACATAAAAAA TAGATGACTT GTGTT AAGTCATCTA AAATTTTTTTATTAT CLH_2152 2303884 - 2302313 - | alpha-amylase TERM 3015 2303919 - 2303934 + r 76 -6.2 -4.89966 | CACTAAAATTATGCT TTGGTA ACGA TACCAA TTTATTTTTAAATAT TERM 3016 2303975 - 2303949 - R 93 -11.1 -3.36694 | opp_overlap 2303953 2303955, overlap 2303947 2303953 ATTTATTTTTAAATA TTAAGATAGGA TTAAT TCCTATCTTAA ATCACATAAGTTTTA TERM 3017 2303971 - 2303953 - R 70 -7.5 -3.45839 | opp_overlap 2303953 2303955, overlap 2303949 2303947 ATTTTTAAATATTAA GATAGGA TTAAT TCCTATC TTAAATCACATAAGT CLH_2153 2304415 - 2303993 - | hypothetical protein TERM 3018 2304525 - 2304499 - H 100 -11.2 -3.8698 | opp_overlap 2304505 2304507, overlap 2304502 CAAGTTAAATTTAAA TAATTATACTTT TAT AAAGTATAATTA GAAGTCTTATACTCA TERM 3019 2304522 - 2304502 - H 79 -8.5 -4.05026 | opp_overlap 2304505 2304507, overlap 2304499 GTTAAATTTAAATAA TTATACTTT TAT AAAGTATAA TTAGAAGTCTTATAC TERM 3020 2305054 - 2305075 + G 80 -8.9 -3.52717 | opp_overlap 2305053 GAATATAATAAGATG TTCATCTAT ATCT ATAGATGAA TTAATTATCTATGCT CLH_2154 2304698 - 2305240 + | hypothetical protein CLH_2155 2305617 - 2306087 + | hypothetical protein TERM 3021 2306103 - 2306129 + T 87 -6.7 -5.34381 | opp_overlap 2306103 TTCAACTTTAAAAAA CCTCTAATG TAAAATACT CATTAGAGG TTTTTATTTAGATTT TERM 3022 2306129 - 2306103 - T 83 -6.7 -5.09426 | opp_overlap 2306103 TTCAACTTTAAAAAA CCTCTAATG TAAAATACT CATTAGAGG TTTTTATTTAGATTT CLH_2156 2306681 - 2306133 - | hypothetical protein CLH_2157 2307417 - 2306782 - | hypothetical protein TERM 3023 2307545 - 2307516 - R 91 -7.2 -5.45802 | CTCTTAAAATAAAAA GAAGATGTCCCT TATATT AGGATCATCTTC TCAAATTACTATATA CLH_2158 2307781 - 2307605 - | hypothetical protein CLH_2159 2308512 - 2308859 + | hypothetical protein TERM 3024 2309077 - 2309028 - T 90 -5.4 -5.95539 | gap 1, opp_overlap 2309076 TTTGAAACAAAAAAA TAAGACACC-TATAATCAATTCT AATTA AAAACTGATTATTCGATGTCTTA TTGAAAATTAATATA spo0A 2309965 - 2309147 - | sporulation transcription factor Spo0A TERM 3025 2310307 - 2310344 + r 80 -9.6 -3.22877 | gap 1, opp_overlap 2310314, overlap 2310308 2310314 2310340 TCATTATTTTTTTAT TAT-AAAAGCACTAATT ATAAA AATTAGTGCTTTTAATA TTACATATTACTTTA TERM 3026 2310308 - 2310342 + r 87 -10.3 -3.16618 | opp_overlap 2310314, overlap 2310307 2310314 2310340 CATTATTTTTTTATT ATAAAAGCACTAATT ATAAA AATTAGTGCTTTTAA TATTACATATTACTT TERM 3027 2310336 - 2310314 - R 93 -9.3 -4.46212 | opp_overlap 2310308 2310307 2310314 TTTTTTATTATAAAA GCACTAATT ATAAA AATTAGTGC TTTTAATATTACATA TERM 3028 2310314 - 2310336 + r 93 -9.3 -4.43681 | opp_overlap 2310314, overlap 2310308 2310307 TTTTTTATTATAAAA GCACTAATT ATAAA AATTAGTGC TTTTAATATTACATA spoIVB 2311542 - 2310352 - | stage IV sporulation protein B TERM 3029 2311799 - 2311775 - R 100 -7.3 -6.35605 | opp_overlap 2311775 2311798 TAATATAAAAAAAAA TAAAACCACGT ATT ACATGATTTTA TTTTTACCAAAATAT recN 2313523 - 2311835 - | DNA repair protein RecN argR 2314002 - 2313550 - | arginine repressor CLH_2164 2314853 - 2313999 - | inorganic polyphosphate/ATP-NAD kinase CLH_2165 2315680 - 2314871 - | hemolysin A TERM 3030 2315001 - 2315018 + g 76 -7.1 -4.39092 | opp_overlap 2315001 CCCTTTATTGGAGAA TATCCTA CCCC TAGGATA TTTAATTTTTCATTT dxs 2317556 - 2315697 - | 1-deoxy-D-xylulose-5-phosphate synthase CLH_2167 2318443 - 2317574 - | geranyltranstransferase TERM 3031 2318383 - 2318395 + g 75 -3.5 -5.52909 | opp_overlap 2318394, overlap 2318383 TATTATAAGAATTTC TATTT ATA AAATA TTTTTTTAAATATTC CLH_2168 2318654 - 2318430 - | hypothetical protein xseA 2319866 - 2318667 - | exodeoxyribonuclease VII, large subunit CLH_2170 2320704 - 2319856 - | bifunctional protein FolD nusB 2321128 - 2320727 - | transcription antitermination factor NusB TERM 3032 2321236 - 2321214 - R 100 -16.4 -3.68827 | opp_overlap 2321211, overlap 2321226 TATCTAGCATGGAAA CACCCTCTGA AAT TCAGAGGGTG AAATTAGATACTACT CLH_2172 2321627 - 2321247 - | alkaline shock protein CLH_2173 2322289 - 2321744 - | stage III sporulation protein AH spoIIIAG 2322959 - 2322330 - | stage III sporulation protein AG TERM 3033 2322750 - 2322765 + g 82 -6.2 -5.10163 | ACCTGAAATGGTCGT TGAAGT GCTT ACTTCA TTTTCTTTTGGACTT TERM 3034 2322797 - 2322825 + g 72 -7 -3.89937 | gap 1, opp_overlap 2322802, overlap 2322794 CTTTTTTATCATCCT TATAAGTAAG-GT CATT ACTCTTACTTATA TATTTATTCTTTGGT CLH_2175 2323558 - 2322971 - | stage III sporulation protein af, spoiiiaf spoIIIAE 2324818 - 2323562 - | stage III sporulation protein AE spoIIIAD 2325213 - 2324830 - | stage III sporulation protein AD spoIIIAC 2325419 - 2325222 - | stage III sporulation protein AC spoIIIAB 2325952 - 2325434 - | stage III sporulation protein AB TERM 3035 2325666 - 2325650 - G 78 -5.9 -4.99645 | opp_overlap 2325650 ATTTGATAAATAAAA CTCTTCT TCT AAAAGAG TATATTCACTACTAA spoIIIAA 2326860 - 2325940 - | stage III sporulation protein AA TERM 3036 2326612 - 2326630 + g 70 -7.6 -3.44284 | overlap 2326610 TCCACCTTTAATTGT TATAAAAC CTT GTTTTATA TCTTCTTCATAAGCA TERM 3037 2326962 - 2326938 - R 93 -6.6 -5.95539 | opp_overlap 2326938 TGTTAAATAAAAAAA GATATGTAAA ATTAA CTTACATATC TTTAAAATCATATAA TERM 3038 2327013 - 2326995 - R 87 -6 -5.71712 | opp_overlap 2326994, overlap 2326996 TTTTATACAAAAAAA GCCATAGT AAA ACTATGGA CATTAAATATTTATC TERM 3039 2327012 - 2326996 - R 86 -9.5 -4.01943 | opp_overlap 2326994, overlap 2326995 TTTATACAAAAAAAG CCATAGT AAA ACTATGG ACATTAAATATTTAT CLH_2181 2327389 - 2327024 - | hypothetical protein TERM 3040 2327443 - 2327412 - R 100 -13.3 -3.85817 | opp_overlap 2327412 2327416, overlap 2327416 ACTTCCTTTTATAAA TAAAGTTGCTAAG AATTAA CTTAGCAACTTTA TTTAGCATTAAAACT TERM 3041 2327412 - 2327443 + r 100 -13.3 -3.66356 | opp_overlap 2327412 2327416, overlap 2327416 ACTTCCTTTTATAAA TAAAGTTGCTAAG AATTAA CTTAGCAACTTTA TTTAGCATTAAAACT TERM 3042 2327439 - 2327416 - R 93 -9.7 -4.55295 | opp_overlap 2327412 2327416, overlap 2327412 CCTTTTATAAATAAA GTTGCTAAG AATTAA CTTAGCAAC TTTATTTAGCATTAA TERM 3043 2327416 - 2327439 + r 93 -9.7 -4.46233 | opp_overlap 2327416 2327412, overlap 2327412 CCTTTTATAAATAAA GTTGCTAAG AATTAA CTTAGCAAC TTTATTTAGCATTAA efp 2328033 - 2327476 - | translation elongation factor P TERM 3044 2328167 - 2328140 - R 89 -9.4 -4.27617 | opp_overlap 2328140 2328144, overlap 2328144 GATATTTTATCAAAA GAAAGAAATAAT TGCA ATTATTTCTCTC TACTTTACATAAAAA TERM 3045 2328163 - 2328144 - R 77 -6.6 -4.72007 | opp_overlap 2328144 2328140, overlap 2328140 TTTTATCAAAAGAAA GAAATAAT TGCA ATTATTTC TCTCTACTTTACATA CLH_2183 2328604 - 2328224 - | putative lipoprotein CLH_2184 2329019 - 2328591 - | hypothetical protein CLH_2185 2329671 - 2328970 - | hypothetical protein CLH_2186 2330161 - 2329769 - | hypothetical protein CLH_2187 2330436 - 2330152 - | hypothetical protein CLH_2188 2331046 - 2330618 - | hypothetical protein CLH_2189 2331514 - 2331077 - | prepilin-type N- cleavage/methylation domain protein CLH_2190 2332587 - 2331511 - | bacterial type II secretion system protein F domain CLH_2191 2333815 - 2332574 - | general secretion pathway protein TERM 3046 2332759 - 2332778 + g 77 -9.4 -2.84586 | opp_overlap 2332757 2332756, overlap 2332757 2332751 CAGAGCTTATAAGTT TTCTGGAT TCAT ATCCAGAA TAATTACATTTTGAA TERM 3047 2334037 - 2334002 - R 100 -9.2 -5.43621 | opp_overlap 2334002 ATAAATTATAAAAAA CACTGAAATAAAAGAT ATTA ATCTCCAATTTCAGTG TTTCGCTTTATTCAT CLH_2192 2335049 - 2334045 - | putative lipoprotein dapF 2335897 - 2335076 - | diaminopimelate epimerase TERM 3048 2337342 - 2337330 - g 74 -6.3 -4.62712 | AAAAAATATAATAAA CTGAA AAT TTCAG AAGAGTATGCTAAAT CLH_2194 2336160 - 2337893 + | fibronectin-binding protein TERM 3049 2338018 - 2337989 - T 100 -13.9 -4.4078 | opp_overlap 2337991, overlap 2338005 CTTTTTTAATTAAAA GACTCTTAATAAA CACT TTTATTAAGAGTC TTAAAAAATCCCACA TERM 3050 2337991 - 2338016 + T 85 -10.7 -3.03124 | opp_overlap 2337989 2338005 TTTTTAATTAAAAGA CTCTTAATAAA CACT TTTATTAAGAG TCTTAAAAAATCCCA TERM 3051 2338053 - 2338082 + T 93 -7.4 -5.73978 | gap 1, opp_overlap 2338053 TTATAGATAAAAAAA CGATAAC-CAAAA ATTAA TTTTGAGTTATCG TTTTTTATTTATACT TERM 3052 2338082 - 2338053 - T 93 -7.4 -5.76633 | gap 1, opp_overlap 2338053 TTATAGATAAAAAAA CGATAAC-CAAAA ATTAA TTTTGAGTTATCG TTTTTTATTTATACT CLH_2195 2339513 - 2338353 - | methyltransferase CLH_2196 2340089 - 2339547 - | PyrR bifunctional protein CLH_2197 2341024 - 2340116 - | ribosomal large subunit pseudouridine synthase D TERM 3053 2341276 - 2341238 - R 100 -9.9 -5.50774 | TATAACAAATAAAAA TACCTTTAAACTGTAAT TATGC ATAACAATTTAAAGGTA AAATAGACTTACATA CLH_2198 2341921 - 2341301 - | minicell-associated protein CLH_2199 2342699 - 2341935 - | S4 domain protein CLH_2200 2342968 - 2342702 - | yggt family protein CLH_2201 2343438 - 2342977 - | hypothetical protein CLH_2202 2344112 - 2343438 - | pyridoxal phosphate enzyme, YggS family TERM 3054 2343548 - 2343562 + g 76 -4.3 -5.21506 | opp_overlap 2343533 CATGAGTCATTCCCA TGGAA AGCAC TTCCA TTTTTATATTCTTAT TERM 3055 2343780 - 2343801 + g 73 -3.1 -5.40474 | AATATTTATTTGAAT TAATACATT TGCT ACTGTATTA TTTTTTTCAAAAACT CLH_2203 2344946 - 2344215 - | hypothetical protein CLH_2204 2345298 - 2344960 - | small basic protein CLH_2205 2346047 - 2345319 - | division initiation protein CLH_2206 2346728 - 2346063 - | cell division protein FtsQ TERM 3056 2347014 - 2346959 - R 90 -7.4 -5.35721 | gap 1, opp_overlap 2346964 2346967 2346969, overlap 2346969 ACATAATAAGAAAAA TTTAATAAA-ATAAGAGTCATAATTAT TTA AAAATTATGACTCTTATCTTTATTTTA ACACTAATTTTAAGA TERM 3057 2346964 - 2347009 + r 100 -11.7 -4.13304 | gap 1, opp_overlap 2346959 2346969, overlap 2346967 2346969 ATAAGAAAAATTTAA TAAA-ATAAGAGTCATAATTAT TTA AAAATTATGACTCTTATCTTTA TTTTAACACTAATTT TERM 3058 2346967 - 2347005 + r 100 -10.6 -4.65933 | opp_overlap 2346959 2346969, overlap 2346964 2346969 AGAAAAATTTAATAA AATAAGAGTCATAATTAT TTA AAAATTATGACTCTTATC TTTATTTTAACACTA TERM 3059 2346969 - 2347003 + r 100 -13.2 -3.93868 | opp_overlap 2346959 2346969, overlap 2346967 2346964 AAAAATTTAATAAAA TAAGAGTCATAATTAT TTA AAAATTATGACTCTTA TCTTTATTTTAACAC TERM 3060 2347003 - 2346969 - R 100 -13.2 -4.79075 | opp_overlap 2346969 2346967 2346964, overlap 2346959 AAAAATTTAATAAAA TAAGAGTCATAATTAT TTA AAAATTATGACTCTTA TCTTTATTTTAACAC TERM 3061 2347082 - 2347101 + r 80 -6.6 -4.98531 | opp_overlap 2347082 ACACCACTTAACCTA TTATATGT ATAA ACATATAA TTTTTAATTTCACCC ftsW 2348244 - 2347120 - | cell division protein FtsW TERM 3062 2347659 - 2347637 - G 79 -9.2 -3.37441 | overlap 2347635 ACAGTAAATAATACA GCTGCACTTA CCA TAAGTGGAGC AACTATTCCAAATAA mraY 2349360 - 2348386 - | phospho-N-acetylmuramoyl-pentapeptide-transferase CLH_2209 2350762 - 2349401 - | UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase murE 2352236 - 2350782 - | UDP-N-acetylmuramyl-tripeptide synthetase TERM 3063 2352339 - 2352309 - R 100 -14.2 -3.81 | opp_overlap 2352308 2352307 ATTATTTTACAACAA TTTAGCATGTGAGC AAA ACCCACATGCTAAA AATTTAACTTAAGTA CLH_2211 2354619 - 2352361 - | stage V sporulation protein D TERM 3064 2354180 - 2354190 + g 71 -4 -5.05577 | GCTCCACTTGGGAGC TTAG TTT CTAA TTTTTCCTTTACTTT CLH_2212 2355276 - 2354773 - | putative cell division protein FtsL mraW 2356256 - 2355324 - | S-adenosyl-methyltransferase MraW TERM 3065 2355420 - 2355431 + g 73 -4.4 -5.00884 | opp_overlap 2355416 2355420 TTTTCTAGATACTAA CCTA ACGC TAGG TTTTTTGCCACAAAT mraZ 2356697 - 2356269 - | MraZ protein TERM 3066 2356774 - 2356802 + r 75 -7.8 -3.94746 | opp_overlap 2356779 CACTTTAAACCACTT TATAATATTTAT TCTAT ATAAATATTATA TTTCCTTCCATATAC CLH_2215 2357148 - 2356867 - | hypothetical protein TERM 3067 2357409 - 2357387 - g 77 -2.9 -5.66989 | TAAATACGAAAAAAA TTTATAATC TAGAT AATTATAAA TACGGTTTAAAGAAA CLH_2216 2357344 - 2358090 + | AzlC family protein CLH_2217 2358091 - 2358390 + | branched-chain amino acid transport TERM 3068 2358593 - 2358648 + T 100 -8 -5.95449 | opp_overlap 2358578 2358585 2358590 2358604 2358615 2358617, overlap 2358596 2358598 2358604 TAAAATTCATAATTT TATGCATAAAAGATATAAGCAATATT AAAA AATATTGCTTATATCTTTTAAAATTA TTTTTTATTTTATTT CLH_2218 2358698 - 2358570 - | hypothetical protein TERM 3069 2358596 - 2358645 + gT 100 -9.7 -4.94109 | opp_overlap 2358590 2358604 2358615 2358617, overlap 2358593 2358598 2358604 AATTCATAATTTTAT GCATAAAAGATATAAGCAATATT AAAA AATATTGCTTATATCTTTTAAAA TTATTTTTTATTTTA TERM 3070 2358598 - 2358643 + gT 100 -16.7 -2.68023 | opp_overlap 2358590 2358604 2358615 2358617, overlap 2358596 2358593 2358604 TTCATAATTTTATGC ATAAAAGATATAAGCAATATT AAAA AATATTGCTTATATCTTTTAA AATTATTTTTTATTT TERM 3071 2358604 - 2358637 + gT 100 -15.7 -4.26634 | opp_overlap 2358604 2358615 2358617, overlap 2358598 2358596 2358593 ATTTTATGCATAAAA GATATAAGCAATATT AAAA AATATTGCTTATATC TTTTAAAATTATTTT TERM 3072 2358637 - 2358604 - GT 100 -15.7 -4.42653 | opp_overlap 2358604 2358598 2358596 2358593, overlap 2358615 2358617 ATTTTATGCATAAAA GATATAAGCAATATT AAAA AATATTGCTTATATC TTTTAAAATTATTTT CLH_2219 2359506 - 2358670 - | integral membrane protein TerC TERM 3073 2358731 - 2358720 - GR 70 -3 -5.19998 | ATAATGAAAATAAAA TACT TGTA AGTA ATATAATCATAATTA TERM 3074 2359655 - 2359597 - R 90 -10.1 -3.69618 | gap 1, opp_overlap 2359616, overlap 2359616 TTTAATTTTAAAATA TAATTTTCTAAAGAAAAAAGGAACCTTC ATTT AAAGGTTCC-TTTTAGTCTAGAAAATTA TATTATACATTAAAT TERM 3075 2359616 - 2359637 + r 84 -8.8 -4.34402 | opp_overlap 2359597 2359616 TTTCTAAAGAAAAAA GGAACCTT CATTTA AAGGTTCC TTTTAGTCTAGAAAA TERM 3076 2359637 - 2359616 - R 100 -9.5 -5.63517 | opp_overlap 2359616, overlap 2359597 TTTCTAAAGAAAAAA GGAACCTTC ATTT AAAGGTTCC TTTTAGTCTAGAAAA CLH_2220 2360755 - 2359658 - | GTP-binding protein YchF TERM 3077 2360929 - 2360913 - H 70 -3.1 -5.30616 | overlap 2360915 TTATTTAAATAAAAA TCTATAT TTA ATATAAA TTACCATGATTAATA TERM 3078 2361003 - 2361041 + H 72 -8.6 -3.12405 | opp_overlap 2361003, overlap 2361001 2361002 ATCTGTAGAAATTTA TTATTCTATATAATATTT AGA AAATGTTATATAAAATAA GTTATATTTTTTGTG TERM 3079 2361107 - 2361083 - H 88 -11.7 -2.82516 | opp_overlap 2361083 2361088, overlap 2361088 TGTTTTAGTATTATA CAAAATAAACT TAT AGTTTATTTTG TACTATAACATCAAT TERM 3080 2361083 - 2361107 + H 86 -11.7 -2.63715 | opp_overlap 2361083 2361088, overlap 2361088 TGTTTTAGTATTATA CAAAATAAACT TAT AGTTTATTTTG TACTATAACATCAAT TERM 3081 2361102 - 2361088 - H 71 -5.8 -4.58424 | opp_overlap 2361083 2361088, overlap 2361083 TAGTATTATACAAAA TAAACT TAT AGTTTA TTTTGTACTATAACA pdaA 2361175 - 2362044 + | delta-lactam-biosynthetic de-N-acetylase TERM 3082 2362084 - 2362126 + T 100 -14.5 -3.37487 | opp_overlap 2362089, overlap 2362089 ATGCTATTTATATAT AAAAAGGTACTATGCATGA TGAAT TTATGCATAGTACCTTTTC TATTTAAGGCTATAA TERM 3083 2362089 - 2362121 + T 100 -14.4 -4.78848 | opp_overlap 2362089, overlap 2362084 ATTTATATATAAAAA GGTACTATGCATGA TGAAT TTATGCATAGTACC TTTTCTATTTAAGGC TERM 3084 2362121 - 2362089 - T 100 -12.2 -5.04597 | opp_overlap 2362089 2362084 ATTTATATATAAAAA GGTACTATGCATGA TGAAT TTATGCATAGTACC TTTTCTATTTAAGGC CLH_2222 2363052 - 2362402 - | methenyltetrahydrofolate cyclohydrolase TERM 3085 2363016 - 2363033 + g 72 -5.7 -4.56969 | CACTTTCTACATCCC CAATAAA TTCT TTTATTG TTTGTTTATAAAATT CLH_2223 2363997 - 2363065 - | O-antigen polymerase family CLH_2224 2365447 - 2364284 - | glycosyl transferase, group 1 CLH_2225 2366736 - 2365453 - | hypothetical protein mviN 2368280 - 2366748 - | integral membrane protein MviN CLH_2227 2368999 - 2368286 - | putative N-acetylmannosaminyltransferase TERM 3086 2368484 - 2368466 - G 75 -7.6 -3.9777 | opp_overlap 2368462 2368470 TCCAACACCCATAAA TATATTAC AAG GTAATATA TCAATATATTTTTCA TERM 3087 2369343 - 2369311 - R 95 -10.8 -4.2349 | opp_overlap 2369307 2369311 TTTTTATATCTAAAA CAGACTCTATAAAA CTAAT TGTTATAGAGTCTG TTAATTTAAATCAAT TERM 3088 2369311 - 2369343 + r 91 -10.8 -3.54676 | opp_overlap 2369311, overlap 2369307 TTTTTATATCTAAAA CAGACTCTATAAAA CTAAT TGTTATAGAGTCTG TTAATTTAAATCAAT CLH_2228 2370446 - 2369358 - | TPR domain protein TERM 3089 2370527 - 2370492 - R 85 -8.5 -4.68724 | opp_overlap 2370480, overlap 2370485 2370480 GTATTTAAGACAAAA GCTGTCTCAAATGAT TATTAT ATCACTTAAAACAGC TTATTTGTAGAATTA CLH_2229 2372272 - 2370545 - | phosphomannomutase CLH_2230 2373170 - 2372436 - | purine nucleoside phosphorylase CLH_2231 2375655 - 2373298 - | MutS2 family protein TERM 3090 2375399 - 2375415 + g 74 -5.1 -5.18561 | TTTAATAGTTGTTCT GGAGTTA ATG TACCTCC TTTTTTCGCTCTTTG CLH_2232 2378014 - 2375669 - | peptidase, U32 family TERM 3091 2376537 - 2376550 + g 70 -5.3 -4.48903 | opp_overlap 2376521 2376537, overlap 2376521 2376532 CTTCTTCGTCTATAA GAAGA TGTT TCTTC TTTTAATATCTTTTC TERM 3092 2378145 - 2378107 - R 100 -12.8 -4.60487 | opp_overlap 2378108 2378109 2378117, overlap 2378108 2378109 2378117 TATTATTCTTAAAAA CCTTTAAAAACTGCTATT AAA AATAGCAGTTTTTAAAAT TGTTATAATTCTATT TERM 3093 2378144 - 2378108 - R 100 -16.3 -3.3581 | opp_overlap 2378108 2378109 2378117, overlap 2378107 2378109 2378117 ATTATTCTTAAAAAC CTTTAAAAACTGCTATT AAA AATAGCAGTTTTTAAAA TTGTTATAATTCTAT TERM 3094 2378108 - 2378144 + r 100 -14.1 -3.91959 | opp_overlap 2378107 2378108 2378109 2378117, overlap 2378109 2378117 ATTATTCTTAAAAAC CTTTAAAAACTGCTATT AAA AATAGCAGTTTTTAAAA TTGTTATAATTCTAT TERM 3095 2378143 - 2378109 - R 100 -17.6 -2.61004 | opp_overlap 2378108 2378109 2378117, overlap 2378108 2378107 2378117 TTATTCTTAAAAACC TTTAAAAACTGCTATT AAA AATAGCAGTTTTTAAA ATTGTTATAATTCTA TERM 3096 2378109 - 2378143 + r 100 -17.6 -2.94091 | opp_overlap 2378109 2378108 2378107 2378117, overlap 2378108 2378117 TTATTCTTAAAAACC TTTAAAAACTGCTATT AAA AATAGCAGTTTTTAAA ATTGTTATAATTCTA TERM 3097 2378135 - 2378117 - R 100 -10.4 -4.67168 | opp_overlap 2378117 2378109 2378108, overlap 2378109 2378108 2378107 AAAAACCTTTAAAAA CTGCTATT AAA AATAGCAG TTTTTAAAATTGTTA TERM 3098 2378117 - 2378135 + r 100 -10.4 -4.70626 | opp_overlap 2378109 2378108 2378107 2378117, overlap 2378109 2378108 AAAAACCTTTAAAAA CTGCTATT AAA AATAGCAG TTTTTAAAATTGTTA CLH_2233 2379776 - 2378169 - | hypothetical protein TERM 3099 2378408 - 2378418 + g 71 -4 -5.08169 | CAGAAGCATCCTTTT TACT TAA AGTA TTTTTTAACGTCTCT TERM 3100 2380015 - 2380070 + r 91 -10.8 -3.76224 | opp_overlap 2380017 2380018, overlap 2380017 2380018 2380020 2380023 2380026 TTTATGCTATATAAA AATTATAAGAACCAAGAGATAACTTT TTTT AATTTTATCTCTTGGTTCTTATACTC TTTACTAAATACAAA TERM 3101 2380068 - 2380017 - R 100 -13.4 -4.9792 | opp_overlap 2380015 2380017 2380018 2380020 2380023 2380026, overlap 2380018 TATGCTATATAAAAA TTATAAGAACCAAGAGATAACTTT TTTT AATTTTATCTCTTGGTTCTTATAC TCTTTACTAAATACA TERM 3102 2380017 - 2380068 + r 100 -13.4 -3.46647 | opp_overlap 2380017 2380018, overlap 2380015 2380018 2380020 2380023 2380026 TATGCTATATAAAAA TTATAAGAACCAAGAGATAACTTT TTTT AATTTTATCTCTTGGTTCTTATAC TCTTTACTAAATACA TERM 3103 2380067 - 2380018 - R 100 -16.9 -3.58029 | opp_overlap 2380017 2380015 2380018 2380020 2380023 2380026, overlap 2380017 ATGCTATATAAAAAT TATAAGAACCAAGAGATAACTTT TTTT AATTTTATCTCTTGGTTCTTATA CTCTTTACTAAATAC TERM 3104 2380018 - 2380067 + r 100 -16.9 -2.67667 | opp_overlap 2380018 2380017, overlap 2380017 2380015 2380020 2380023 2380026 ATGCTATATAAAAAT TATAAGAACCAAGAGATAACTTT TTTT AATTTTATCTCTTGGTTCTTATA CTCTTTACTAAATAC TERM 3105 2380020 - 2380065 + r 100 -15.1 -2.87769 | opp_overlap 2380018 2380017, overlap 2380018 2380017 2380015 2380023 2380026 GCTATATAAAAATTA TAAGAACCAAGAGATAACTTT TTTT AATTTTATCTCTTGGTTCTTA TACTCTTTACTAAAT TERM 3106 2380023 - 2380062 + r 95 -12.4 -3.57908 | opp_overlap 2380018 2380017, overlap 2380020 2380018 2380017 2380015 2380026 ATATAAAAATTATAA GAACCAAGAGATAACTTT TTTT AATTTTATCTCTTGGTTC TTATACTCTTTACTA TERM 3107 2380026 - 2380059 + r 78 -8.3 -3.90897 | opp_overlap 2380018 2380017, overlap 2380023 2380020 2380018 2380017 2380015 TAAAAATTATAAGAA CCAAGAGATAACTTT TTTT AATTTTATCTCTTGG TTCTTATACTCTTTA CLH_2234 2380235 - 2380089 - | hypothetical protein CLH_2235 2380535 - 2381785 + | permease of the major facilitator superfamily TERM 3108 2381977 - 2381919 - T 100 -21.5 -3.8709 | gap 1, opp_overlap 2381922 2381924 2381927, overlap 2381922 2381924 2381927 AAATTTTGCTATAAA TTATACAAGGGGATGTCTCATATTGCAT TTTT ATGCAATATGAGGCATCCCCTTGTATG- ATTAAACCTAAAATT TERM 3109 2381922 - 2381975 + T 100 -32.3 -2.72344 | opp_overlap 2381922 2381919 2381924 2381927, overlap 2381924 2381927 TTTTGCTATAAATTA TACAAGGGGATGTCTCATATTGCAT TTTT ATGCAATATGAGGCATCCCCTTGTA TGATTAAACCTAAAA TERM 3110 2381975 - 2381922 - T 100 -30.1 -3.00946 | opp_overlap 2381922 2381924 2381927, overlap 2381919 2381924 2381927 TTTTGCTATAAATTA TACAAGGGGATGTCTCATATTGCAT TTTT ATGCAATATGAGGCATCCCCTTGTA TGATTAAACCTAAAA TERM 3111 2381924 - 2381973 + T 100 -30.5 -2.90723 | opp_overlap 2381922 2381919 2381924 2381927, overlap 2381922 2381927 TTGCTATAAATTATA CAAGGGGATGTCTCATATTGCAT TTTT ATGCAATATGAGGCATCCCCTTG TATGATTAAACCTAA TERM 3112 2381973 - 2381924 - T 100 -28.3 -3.05997 | opp_overlap 2381924 2381922 2381927, overlap 2381922 2381919 2381927 TTGCTATAAATTATA CAAGGGGATGTCTCATATTGCAT TTTT ATGCAATATGAGGCATCCCCTTG TATGATTAAACCTAA TERM 3113 2381970 - 2381927 - T 100 -24.2 -3.66897 | opp_overlap 2381924 2381922 2381927, overlap 2381924 2381922 2381919 CTATAAATTATACAA GGGGATGTCTCATATTGCAT TTTT ATGCAATATGAGGCATCCCC TTGTATGATTAAACC TERM 3114 2381927 - 2381970 + T 100 -26.4 -3.59946 | opp_overlap 2381927 2381924 2381922 2381919, overlap 2381924 2381922 CTATAAATTATACAA GGGGATGTCTCATATTGCAT TTTT ATGCAATATGAGGCATCCCC TTGTATGATTAAACC CLH_2236 2382635 - 2382075 - | diguanylate cyclase CLH_2237 2385057 - 2383357 - | response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor TERM 3115 2383756 - 2383780 + g 82 -5.2 -5.5454 | gap 1 TGGCGCCCAACAACT TTCTGTTA-AC TCTA GTATAACAGAA TTTTTCTTTATTTCG TERM 3116 2384352 - 2384375 + g 78 -2.6 -5.75599 | opp_overlap 2384357, overlap 2384355 CATTCATATAATCTC TAATATTATT AAAT AATAATTTTA TTTTTTTATAATTTA TERM 3117 2384452 - 2384465 + g 74 -3.9 -5.24531 | ATTAACAGTTTTAGG TAACA TTAA TGTTA TTTTTTGTGCCACAT TERM 3118 2384561 - 2384577 + g 77 -5.1 -5.24129 | CCCATAACTATTACT GCAGAAT CAA ATTCAGC TTTTTTATCAAGAAA TERM 3119 2384794 - 2384810 + g 84 -6.7 -5.10665 | opp_overlap 2384776, overlap 2384776 AAAAACATTAGTATT TGAAATT CCT AATTTCA TTTTATTTATTCCAT TERM 3120 2385302 - 2385348 + r 82 -2.4 -6.20267 | opp_overlap 2385273 2385304, overlap 2385304 TAACTTAATAAAAAA AACAGAACTTACCAAAACTC ATTGTTA GAGTTTAGATAAATTCTGTA TTTTTTTATTTTTAA TERM 3121 2385346 - 2385304 - R 100 -9.4 -6.11243 | opp_overlap 2385304 2385302 ACTTAATAAAAAAAA CAGAACTTACCAAAACTC ATTGTTA GAGTTTAGATAAATTCTG TATTTTTTTATTTTT CLH_2238 2386357 - 2385410 - | metallo-beta-lactamase family protein TERM 3122 2386582 - 2386545 - R 100 -16.1 -3.64299 | opp_overlap 2386549, overlap 2386549 TATAGTATAAACTAA TAAAGTTATCAAATAAA GACT TTTATTTGATAACTTTA ACTAAATCATATTAT TERM 3123 2386549 - 2386578 + r 95 -12.5 -3.67296 | opp_overlap 2386545 2386549 GTATAAACTAATAAA GTTATCAAATAAA GACT TTTATTTGATAAC TTTAACTAAATCATA TERM 3124 2386578 - 2386549 - R 100 -12.5 -4.42976 | opp_overlap 2386549, overlap 2386545 GTATAAACTAATAAA GTTATCAAATAAA GACT TTTATTTGATAAC TTTAACTAAATCATA CLH_2239 2387536 - 2386721 - | mechanosensitive ion channel family protein CLH_2240 2388561 - 2387644 - | muramoyltetrapeptide carboxypeptidase TERM 3125 2388671 - 2388617 - R 78 -8.4 -3.96542 | gap 2, opp_overlap 2388619 2388624, overlap 2388607 2388618 2388621 2388626 TTAAATAAATCTAAA TTTATCATAGTTTTTTCTAAGGTGGC GAAAT ACCACCTTAGAAAAAACTAT--TAAG TTCTATAATAAAATT TERM 3126 2388670 - 2388618 - R 90 -11.9 -2.96841 | gap 2, opp_overlap 2388619 2388624, overlap 2388607 2388617 2388621 2388626 TAAATAAATCTAAAT TTATCATAGTTTTTTCTAAGGTGGC GAAAT ACCACCTTAGAAAAAACTAT--TAA GTTCTATAATAAAAT TERM 3127 2388619 - 2388671 + r 100 -13.1 -3.55219 | opp_overlap 2388607 2388618 2388617 2388621 2388626, overlap 2388624 AAATAAATCTAAATT TATCATAGTTTTTTCTAAGGTGG CGAAATA CCACCTTAGAAAAAACTATTAAG TTCTATAATAAAATT TERM 3128 2388669 - 2388621 - R 100 -18.6 -2.6993 | opp_overlap 2388619 2388624, overlap 2388618 2388617 2388626 ATAAATCTAAATTTA TCATAGTTTTTTCTAAGGTGGC GAAAT ACCACCTTAGAAAAAACTATTA AGTTCTATAATAAAA TERM 3129 2388624 - 2388666 + r 100 -19.6 -3.27164 | opp_overlap 2388621 2388618 2388617 2388626, overlap 2388619 AATCTAAATTTATCA TAGTTTTTTCTAAGGTGG CGAAATA CCACCTTAGAAAAAACTA TTAAGTTCTATAATA TERM 3130 2388664 - 2388626 - R 100 -18.5 -2.84732 | opp_overlap 2388624 2388619, overlap 2388621 2388618 2388617 TCTAAATTTATCATA GTTTTTTCTAAGGTGGC GAAAT ACCACCTTAGAAAAAAC TATTAAGTTCTATAA TERM 3131 2388786 - 2388755 - R 100 -11.9 -6.34616 | opp_overlap 2388755 TTAAAACAAAAAAAA TGATTGGATTTTA AATTCA TAAAATCCAATCA TTTTTATTTTAATAA TERM 3132 2388755 - 2388786 + r 100 -11.9 -5.50723 | opp_overlap 2388755 TTAAAACAAAAAAAA TGATTGGATTTTA AATTCA TAAAATCCAATCA TTTTTATTTTAATAA pheT 2391179 - 2388804 - | phenylalanyl-tRNA synthetase, beta subunit pheS 2392318 - 2391299 - | phenylalanyl-tRNA synthetase, alpha subunit TERM 3133 2392380 - 2392358 - R 100 -10.6 -5.96219 | opp_overlap 2392358 2392357, overlap 2392378 TATGTACAAAAAAAA TCGTCCCCCT ATA AAAGGGACGA ATTATCCGCGTTACC TERM 3134 2392821 - 2392791 - R 80 -8.5 -4.36931 | opp_overlap 2392786 2392802, overlap 2392797 2392807 TAATTTATACTAAAA TAAAAAGTCCTCA AAATA TAAGGACTTTTCA TTATATTTTATTGTT TERM 3135 2392815 - 2392797 - R 82 -5.3 -5.52079 | opp_overlap 2392786 2392802, overlap 2392791 2392807 ATACTAAAATAAAAA GTCCTCA AAATA TAAGGAC TTTTCATTATATTTT CLH_2243 2394987 - 2392846 - | V-type H(+)-translocating pyrophosphatase TERM 3136 2393509 - 2393485 - G 70 -2.1 -5.47964 | AGAAAACAATAAAAA TGTTGCTAAAG CTG CACTACCAACA GCATATCCTTTTGTT TERM 3137 2394053 - 2394040 - G 74 -3.9 -5.35815 | opp_overlap 2394040 TATAGGAAATAAAAA TATTG CACA CAATA CTGTTGTTATAAAGT TERM 3138 2395050 - 2395014 - R 70 -6.2 -4.30576 | gap 1, opp_overlap 2395020, overlap 2395017 2395020 CTTTTATTAGTAAAA TAACAAGAGTAGATATA AAAT TATATCTACTCTT-TAA AATATTTTTCTAAAT TERM 3139 2395048 - 2395017 - R 95 -10.4 -4.27443 | opp_overlap 2395020, overlap 2395014 2395020 TTATTAGTAAAATAA CAAGAGTAGATATA AAAT TATATCTACTCTTT AAAATATTTTTCTAA TERM 3140 2395045 - 2395020 - R 100 -12.1 -4.24149 | opp_overlap 2395020, overlap 2395017 2395014 TTAGTAAAATAACAA GAGTAGATATA AAAT TATATCTACTC TTTAAAATATTTTTC TERM 3141 2395020 - 2395045 + r 95 -12.1 -3.73294 | opp_overlap 2395017 2395014 2395020 TTAGTAAAATAACAA GAGTAGATATA AAAT TATATCTACTC TTTAAAATATTTTTC CLH_2244 2396011 - 2395223 - | RNA methyltransferase, TrmH family CLH_2245 2396694 - 2396026 - | potassium uptake protein TERM 3142 2396733 - 2396746 + r 78 -5.3 -5.1502 | AATATCTTACCTTCT GGATA TCTA TATCC TTTCTTTTTCTTTCT CLH_2246 2398057 - 2396708 - | potassium uptake protein, TrkH family TERM 3143 2397550 - 2397531 - G 81 -7.2 -4.72863 | overlap 2397532 CCAAATAAATCAAAA CCAGCATT ACAA AATGCTGA AATAGAATGAAATAC TERM 3144 2397549 - 2397532 - G 75 -8.5 -3.42091 | overlap 2397531 CAAATAAATCAAAAC CAGCATT ACAA AATGCTG AAATAGAATGAAATA TERM 3145 2398201 - 2398169 - R 82 -10.2 -3.07522 | gap 1, opp_overlap 2398178, overlap 2398172 2398178 ATATTTCTCAATATA TAATAAAAATGCGAC CTAA GTCGCATTTTT-TTA AGCGTTTAATTGTTT TERM 3146 2398199 - 2398172 - R 90 -10 -3.68024 | opp_overlap 2398178, overlap 2398169 2398178 TTTCTCAATATATAA TAAAAATGCGAC CTAA GTCGCATTTTTT TAAGCGTTTAATTGT TERM 3147 2398178 - 2398193 + r 100 -9 -5.4477 | opp_overlap 2398178 2398172 2398169 AATATATAATAAAAA TGCGAC CTAA GTCGCA TTTTTTTAAGCGTTT TERM 3148 2398193 - 2398178 - R 100 -9 -5.28561 | opp_overlap 2398178, overlap 2398172 2398169 AATATATAATAAAAA TGCGAC CTAA GTCGCA TTTTTTTAAGCGTTT rplT 2398558 - 2398199 - | ribosomal protein L20 rpmI 2398784 - 2398587 - | ribosomal protein L35 TERM 3149 2398651 - 2398666 + g 70 -6.2 -4.14874 | ACGTATCCACCTTTT CTAAGA TTTC TCTTAG TTTTAGGACTCTTCT infC 2399327 - 2398806 - | translation initiation factor IF-3 TERM 3150 2399371 - 2399355 - R 100 -10.1 -4.87592 | opp_overlap 2399357 TTATACATAATAAAA GACGGCC ATA AGCCGTC TTACACTATCACTAT CLH_2250 2400392 - 2399484 - | putative sporulation protein YtxC TERM 3151 2400779 - 2400763 - g 84 -6.7 -5.00895 | opp_overlap 2400763 2400766 TTTATTAGATAAAAA GAATATA AAA TATATTC TTTCAAATTCAGCCT CLH_2251 2400545 - 2401249 + | hypothetical protein TERM 3152 2401417 - 2401454 + T 90 -10.1 -3.76486 | opp_overlap 2401422, overlap 2401422 AATATTTTAAAAACA AAAAATGTACTTTAACG CAAA CGTCAAAGTACATTTTC TTACTTTATTTAACT TERM 3153 2401422 - 2401449 + T 100 -10 -4.88407 | opp_overlap 2401422, overlap 2401417 TTTAAAAACAAAAAA TGTACTTTAACG CAAA CGTCAAAGTACA TTTTCTTACTTTATT TERM 3154 2401449 - 2401422 - T 100 -12.2 -5.93252 | opp_overlap 2401417 2401422 TTTAAAAACAAAAAA TGTACTTTAACG CAAA CGTCAAAGTACA TTTTCTTACTTTATT hslO 2402407 - 2401520 - | chaperonin HslO CLH_2253 2403162 - 2402425 - | S-adenosylmethionine-dependent methyltransferase CLH_2254 2403716 - 2403447 - | small, acid-soluble spore protein, alpha/beta family TERM 3155 2404131 - 2404117 - g 78 -5.8 -4.87291 | GATCTGAAGGAAAAA CTTTAA AAT TTAAAG GAGAGGATTTTTTAG asd 2403990 - 2404982 + | aspartate-semialdehyde dehydrogenase dapA 2404999 - 2405877 + | dihydrodipicolinate synthase TERM 3156 2406199 - 2406185 - g 74 -2.8 -5.64304 | TAATAGAAGAAAAAA GCAGAA CAC TTCCAC TATTCCGTTCTGCTA dapB 2405887 - 2406645 + | dihydrodipicolinate reductase TERM 3157 2406660 - 2406707 + T 100 -14 -5.19998 | gap 1, opp_overlap 2406649 2406648 2406673, overlap 2406673 GAACTGTTTTGATAT TTCAAATCAAAAAGAGGAGATTT TTA AAATCTCCTCTTTTT-ATTTAAA TTTTATTTTCCTTCT TERM 3158 2406673 - 2406695 + T 100 -13.6 -5.34381 | opp_overlap 2406673, overlap 2406660 ATTTCAAATCAAAAA GAGGAGATTT TTA AAATCTCCTC TTTTTATTTAAATTT TERM 3159 2406695 - 2406673 - T 100 -13.6 -4.99134 | opp_overlap 2406660 2406673 ATTTCAAATCAAAAA GAGGAGATTT TTA AAATCTCCTC TTTTTATTTAAATTT CLH_2258 2408359 - 2406710 - | oligopeptide-binding protein OppA TERM 3160 2408085 - 2408098 + g 70 -5.3 -4.59853 | opp_overlap 2408075 TAAACTGTTCCATCT TGTGA AACA TCACA TTTTTCAGCAATTCC CLH_2259 2409531 - 2408551 - | oligopeptide transport ATP-binding protein AppF CLH_2260 2410541 - 2409531 - | oligopeptide transport ATP-binding protein OppD TERM 3161 2409921 - 2409931 + g 76 -4 -5.38497 | opp_overlap 2409921 AGTAATTAATATAAT TGAA GTA TTCA TTTTTTCCTTTAAAT CLH_2261 2411498 - 2410554 - | oligopeptide transport system permease protein OppC TERM 3162 2410718 - 2410702 - G 77 -9.5 -2.95116 | opp_overlap 2410684 TCATTAGCTAAAGTA CCTAAAG ATG CTTTAGG CGGAACAAGTCCTAA CLH_2262 2412443 - 2411517 - | oligopeptide transport system permease protein OppB TERM 3163 2411963 - 2411953 - G 74 -6.8 -4.3534 | TTCCAACTACTAAAA CCAG TTG CTGG TAATAATCTAAACTC TERM 3164 2412728 - 2412746 + r 78 -7.6 -4.28925 | opp_overlap 2412728 2412730, overlap 2412732 ATAAATAGCAGCATA TATTGATA ATA TATCAATA TTCTCTTTTTTTCAT TERM 3165 2412925 - 2412974 + r 93 -11 -3.30214 | opp_overlap 2412927, overlap 2412927 2412937 GTTATAATAATTAAA AATTGCTTCATATGTATACGGA GCATAA TCCATATACATTTGAAGCAATA TTAATGTGCTAAATT TERM 3166 2412927 - 2412972 + r 100 -13.6 -3.214 | opp_overlap 2412927, overlap 2412925 2412937 TATAATAATTAAAAA TTGCTTCATATGTATACGGA GCATAA TCCATATACATTTGAAGCAA TATTAATGTGCTAAA TERM 3167 2412972 - 2412927 - R 100 -15.8 -5.01845 | opp_overlap 2412925 2412927 2412937 TATAATAATTAAAAA TTGCTTCATATGTATACGGA GCATAA TCCATATACATTTGAAGCAA TATTAATGTGCTAAA oppA 2414658 - 2412988 - | oligopeptide ABC transporter, periplasmic oligopeptide-binding protein TERM 3168 2414987 - 2415031 + r 100 -13.3 -3.6372 | opp_overlap 2414987, overlap 2414981 CTACATAATAAAAAA GCATTTAAGATTTATAATC AATAACC GAGTATAAATCTTAAATGC TTCTAATTATCTTTT TERM 3169 2415031 - 2414987 - R 100 -14.7 -5.60689 | opp_overlap 2414981 2414987 CTACATAATAAAAAA GCATTTAAGATTTATAATCAA TAA CCGAGTATAAATCTTAAATGC TTCTAATTATCTTTT CLH_2264 2416315 - 2415176 - | putative aminotransferase A dapD 2416537 - 2417247 + | 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase TERM 3170 2417296 - 2417245 - T 79 -7.1 -4.69053 | gap 2, opp_overlap 2417254 2417260, overlap 2417248 2417254 GATGATTTAAGAAAA TAATACATATGAAAAGAGGATTTCT ATTA AGAAATCCCCTTTTCAT-T-TATAA GCTCTATTTCAACTC TERM 3171 2417295 - 2417248 - T 100 -16 -4.44914 | opp_overlap 2417254 2417260, overlap 2417245 2417254 GATTTAAGAAAATAA TACATATGAAAAGAGGATTTCT ATTA AGAAATCCCCTTTTCATTTATA AGCTCTATTTCAACT TERM 3172 2417254 - 2417289 + T 100 -15 -3.9226 | opp_overlap 2417254 2417248 2417245, overlap 2417260 AGAAAATAATACATA TGAAAAGAGGATTTCT ATTA AGAAATCCCCTTTTCA TTTATAAGCTCTATT TERM 3173 2417289 - 2417254 - T 100 -17.2 -3.27739 | opp_overlap 2417254 2417260, overlap 2417248 2417245 AGAAAATAATACATA TGAAAAGAGGATTTCT ATTA AGAAATCCCCTTTTCA TTTATAAGCTCTATT TERM 3174 2417260 - 2417283 + T 85 -8.2 -4.61873 | opp_overlap 2417254 2417248 2417245, overlap 2417254 TAATACATATGAAAA GAGGATTTCT ATTA AGAAATCCCC TTTTCATTTATAAGC CLH_2266 2418035 - 2417385 - | single-strand binding domain protein CLH_2267 2418895 - 2418134 - | chitooligosaccharide deacetylase TERM 3175 2418248 - 2418264 + g 79 -9.5 -3.2789 | opp_overlap 2418244, overlap 2418246 2418244 CTCTGTTATAATTTT CTCCAAA TTC TTTGGAG TATATTTGGCATTGT TERM 3176 2418908 - 2418920 + H 73 -3.5 -5.59534 | CACCCTAAACTCTCC TTATA TTT TATAA TTTTTTATTCTACTT CLH_2269 2419023 - 2419556 + | hypothetical protein TERM 3177 2419594 - 2419564 - T 72 -8.4 -3.24414 | opp_overlap 2419564, overlap 2419563 ATTCTTAATTAAAAG CATAGCATTAGG TTCTTTT CCTATTGCTATG TTTTTTATTATCCTA TERM 3178 2419564 - 2419594 + T 100 -8.4 -5.58179 | opp_overlap 2419564 2419563 ATTCTTAATTAAAAG CATAGCATTAGG TTCTTTT CCTATTGCTATG TTTTTTATTATCCTA CLH_2268 2420433 - 2419540 - | hypothetical protein TERM 3179 2420676 - 2420666 - g 71 -4 -5.093 | TTGAAAATAATAAAA TACA GAC TGTA AATTTCATTGGTGGA CLH_2270 2420599 - 2420847 + | hypothetical protein TERM 3180 2420855 - 2420883 + T 100 -10.4 -5.1523 | opp_overlap 2420855 GTTGTTAAGAAAAAA TGGTGTATCGTA AAAAA TTCGATACACCA TTTTTCTATTGTAAA TERM 3181 2420883 - 2420855 - T 100 -10.4 -5.4505 | opp_overlap 2420855 GTTGTTAAGAAAAAA TGGTGTATCGTA AAAAA TTCGATACACCA TTTTTCTATTGTAAA CLH_2271 2422859 - 2420889 - | hiran domain family CLH_2272 2424219 - 2422906 - | folylpolyglutamate synthase TERM 3182 2423277 - 2423292 + g 72 -6.2 -4.35958 | TATTATGTGCTCCAT CCATTA CAAT TAATGG TTCTTTATTTAATAC TERM 3183 2423725 - 2423755 + g 78 -9.2 -3.17763 | opp_overlap 2423725, overlap 2423730 ATCAAAACTAATTGA TGTAATAACACTAA CAA TTGGAGTTATTACA TTGGTAGAATCTAAC CLH_2273 2424661 - 2424341 - | hypothetical protein TERM 3184 2424947 - 2424917 - R 72 -6.3 -4.43012 | opp_overlap 2424920, overlap 2424920 2424924 ATCTTAAGATCAAAA TAACAAAGTATGA TTGTG TCACACTTTGTTT TAGGCACATGAAATA TERM 3185 2424944 - 2424920 - R 78 -8 -4.32583 | opp_overlap 2424920, overlap 2424917 2424924 TTAAGATCAAAATAA CAAAGTATGA TTGTG TCACACTTTG TTTTAGGCACATGAA TERM 3186 2424920 - 2424944 + r 71 -6.5 -4.08767 | opp_overlap 2424917 2424920 2424924 TTAAGATCAAAATAA CAAAGTATGAT TGT GTCACACTTTG TTTTAGGCACATGAA TERM 3187 2425014 - 2425043 + r 83 -9.5 -3.60805 | opp_overlap 2425014 CAGACAAGGAGACAA GTTTAGTTAATAG TGGT CTATTAGCTGAAC TTTCCGATGAAGTAT TERM 3188 2425114 - 2425147 + r 90 -12.7 -2.73483 | opp_overlap 2425114, overlap 2425117 CATATAATAAAAAAA GAATTGCACACATAT TAAA ATATGTGTACAATTC TCATTAAAATCACGT TERM 3189 2425147 - 2425114 - R 100 -14.9 -5.9218 | opp_overlap 2425114 2425117 CATATAATAAAAAAA GAATTGCACACATAT TAAA ATATGTGTACAATTC TCATTAAAATCACGT TERM 3190 2425117 - 2425144 + r 75 -8.6 -3.51825 | opp_overlap 2425114, overlap 2425114 ATAATAAAAAAAGAA TTGCACACATAT TAAA ATATGTGTACAA TTCTCATTAAAATCA valS 2427818 - 2425176 - | valyl-tRNA synthetase TERM 3191 2427509 - 2427521 + g 70 -7.7 -3.34192 | CTTTTTTATTGTAAC CTTGC TTA GCAAG TTCATTAGCAACCTT TERM 3192 2427983 - 2427957 - R 73 -2.3 -5.7946 | gap 1 TCTGCAATAAAAAAA GCCCTCAATCCT TAAA AGGAC-GAAGAC TCGCGGTACCACCTT CLH_2275 2429233 - 2428373 - | LD-carboxypeptidase family protein TERM 3193 2428413 - 2428435 + g 77 -4.8 -5.32396 | overlap 2428418 ATAATAATACATTTT GAATCTGGTC CAT GACCAATTTC TTTTGTTTTTACTAT TERM 3194 2428418 - 2428430 + g 71 -7.7 -3.6222 | overlap 2428413 AATACATTTTGAATC TGGTC CAT GACCA ATTTCTTTTGTTTTT TERM 3195 2429753 - 2429719 - H 70 -3.8 -5.24989 | opp_overlap 2429699 2429727 2429729, overlap 2429721 TTAGACATCAAAAAA TATTTATACATATATT TTT AATGTATGTATTAACA ATTTGGAGGTAGTAT CLH_2276 2429773 - 2430744 + | bactoprenol glucosyl transferase CLH_2277 2430754 - 2431158 + | hypothetical protein TERM 3196 2431301 - 2431337 + T 90 -11 -3.17901 | opp_overlap 2431304, overlap 2431291 2431304 2431306 TAGTGTTTTTCATAA TAATATCTAAGGTGGC AAAAC GCCACCTTAGATATAC TTAAATTAAAAATAT TERM 3197 2431304 - 2431334 + T 100 -17.1 -2.78712 | opp_overlap 2431304, overlap 2431301 2431291 2431306 TGTTTTTCATAATAA TATCTAAGGTGGC AAAAC GCCACCTTAGATA TACTTAAATTAAAAA TERM 3198 2431334 - 2431304 - T 100 -17.8 -3.78934 | opp_overlap 2431301 2431291 2431304 2431306 TGTTTTTCATAATAA TATCTAAGGTGGCA AAA CGCCACCTTAGATA TACTTAAATTAAAAA TERM 3199 2431306 - 2431332 + T 100 -15.3 -2.93991 | opp_overlap 2431304, overlap 2431304 2431301 2431291 TTTTTCATAATAATA TCTAAGGTGGC AAAAC GCCACCTTAGA TATACTTAAATTAAA CLH_2278 2432519 - 2431356 - | NADH-dependent butanol dehydrogenase a TERM 3200 2432162 - 2432174 + g 75 -7.7 -4.04209 | opp_overlap 2432162 TTGAATCTAACACAA GATCC CAT GGATC TTTATCATAGTTTAC TERM 3201 2432174 - 2432162 - G 73 -7.7 -3.71686 | opp_overlap 2432162 TTGAATCTAACACAA GATCC CAT GGATC TTTATCATAGTTTAC CLH_2279 2433430 - 2432750 - | ribosomal large subunit pseudouridine synthase F CLH_2280 2436721 - 2433524 - | sensor histidine kinase/response regulator TERM 3202 2434536 - 2434552 + g 70 -6.7 -4.02456 | CTAATTATCCAGTCA TTATCAA CAC TTGATAA TTTATAATAATATTT TERM 3203 2436997 - 2437019 + r 100 -15 -4.86621 | AACACATGTATTTTA GCCTGAAAGA TAT TCTTTCAGGC TTTTTGCTTAAACCT uvdE 2437989 - 2437027 - | UV damage endonuclease UvdE TERM 3204 2438111 - 2438156 + r 100 -12.3 -4.29981 | opp_overlap 2438111 2438114, overlap 2438155 ATACCAAGGCATAAA TAACACATCCTTATAAAAT TTATTCTT ACTTTATAAGGATGTGTTA TTTTAAATATATTTA TERM 3205 2438156 - 2438111 - R 100 -14.5 -3.99228 | opp_overlap 2438111 2438155, overlap 2438114 ATACCAAGGCATAAA TAACACATCCTTATAAAAT TTATTCTT ACTTTATAAGGATGTGTTA TTTTAAATATATTTA TERM 3206 2438153 - 2438114 - R 100 -11.8 -4.11304 | opp_overlap 2438111, overlap 2438111 CCAAGGCATAAATAA CACATCCTTATAAAAT TTATTCTT ACTTTATAAGGATGTG TTATTTTAAATATAT CLH_2282 2439106 - 2438222 - | conserved repeat domain protein CLH_2283 2439615 - 2439136 - | hypothetical protein TERM 3207 2439346 - 2439326 - G 75 -8.5 -3.48276 | opp_overlap 2439329 2439342, overlap 2439329 2439342 TCTCTTTCTATATAA TAACAATTA GGA TAATTGTTA TTAACATTTGCTATA TERM 3208 2439705 - 2439749 + r 81 -8.9 -3.92005 | opp_overlap 2439709, overlap 2439697 2439709 2439712 TAATTTTTTAATAAT AAAAGAAGTTGTTTTAAAATA CTT TATTTTAAAACAACTTCTAAA TTTAAATTTCTATAT TERM 3209 2439709 - 2439745 + r 100 -18.5 -2.6993 | opp_overlap 2439709, overlap 2439705 2439697 2439712 TTTTTAATAATAAAA GAAGTTGTTTTAAAATA CTT TATTTTAAAACAACTTC TAAATTTAAATTTCT TERM 3210 2439745 - 2439709 - R 100 -18.5 -4.89477 | opp_overlap 2439705 2439697 2439709 2439712 TTTTTAATAATAAAA GAAGTTGTTTTAAAATA CTT TATTTTAAAACAACTTC TAAATTTAAATTTCT TERM 3211 2439712 - 2439742 + r 100 -14.4 -3.48465 | opp_overlap 2439709, overlap 2439709 2439705 2439697 TTAATAATAAAAGAA GTTGTTTTAAAATA CTT TATTTTAAAACAAC TTCTAAATTTAAATT CLH_2284 2447866 - 2439767 - | conserved repeat domain protein TERM 3212 2441368 - 2441394 + g 90 -11.1 -3.27923 | opp_overlap 2441368 TAGGATTTTGAATAA TTGTAACAGTA AATGA TACTGTTACAA TTCCTAATGTTGAAA TERM 3213 2441394 - 2441368 - G 90 -11.1 -3.63991 | opp_overlap 2441368 TAGGATTTTGAATAA TTGTAACAGTA AATGA TACTGTTACAA TTCCTAATGTTGAAA TERM 3214 2441905 - 2441886 - G 70 -5 -4.65747 | GAATTTGTAACAAAA GTTAAACC ATTT GGTATAAC ATCTCTAAAGTTTAT TERM 3215 2444605 - 2444595 - G 75 -5.4 -4.89477 | opp_overlap 2444595 GTTCCAATAATAAAA CCTA AAT TAGG ATTATAAGAAGATTT CLH_2285 2448090 - 2451509 + | conserved repeat domain protein TERM 3216 2451577 - 2451521 - T 83 -6.1 -5.37865 | opp_overlap 2451521 2451527, overlap 2451523 2451527 TTAATAACTAAAAAA TACGAATATCCCCACTAAGTATTAA AATCAAA TTTGTACTTAGTGGGGATATTTAAA TTATCTTTTATTTTT TERM 3217 2451521 - 2451577 + T 79 -8.3 -4.1922 | opp_overlap 2451521 2451523 2451527, overlap 2451527 TTAATAACTAAAAAA TACGAATATCCCCACTAAGTATTAA AATCAAA TTTGTACTTAGTGGGGATATTTAAA TTATCTTTTATTTTT TERM 3218 2451575 - 2451523 - T 84 -8.7 -4.30543 | opp_overlap 2451521 2451527, overlap 2451521 2451527 AATAACTAAAAAATA CGAATATCCCCACTAAGTATTAA AATCAAA TTTGTACTTAGTGGGGATATTTA AATTATCTTTTATTT TERM 3219 2451571 - 2451527 - T 95 -11.7 -3.67898 | opp_overlap 2451521 2451527, overlap 2451523 2451521 ACTAAAAAATACGAA TATCCCCACTAAGTATTAA AATCAAA TTTGTACTTAGTGGGGATA TTTAAATTATCTTTT TERM 3220 2451527 - 2451571 + T 100 -13.9 -3.8802 | opp_overlap 2451527 2451523 2451521, overlap 2451521 ACTAAAAAATACGAA TATCCCCACTAAGTATTAA AATCAAA TTTGTACTTAGTGGGGATA TTTAAATTATCTTTT CLH_2286 2452363 - 2451752 - | hypothetical protein CLH_2287 2453877 - 2452516 - | mate efflux family protein TERM 3221 2454077 - 2454067 - g 74 -4 -5.29445 | overlap 2454061 2454070 GTGTAATAATAAAAA TAGT TTT ACTA ATTCAAGTAAAATGA CLH_2288 2454050 - 2454502 + | hypothetical protein TERM 3222 2454656 - 2454702 + T 76 -6.3 -4.86861 | gap 1, opp_overlap 2454663 2454669, overlap 2454663 TATTTATGTATGCGT ATATAAAGATAAAGCATGAA CAAATTCA TTCATGCTTTATC-TTATAG TTTGTTTATTTATTA TERM 3223 2454663 - 2454696 + T 95 -11.3 -3.73146 | opp_overlap 2454663 2454669, overlap 2454656 GTATGCGTATATAAA GATAAAGCATGAA CAAATTCA TTCATGCTTTATC TTATAGTTTGTTTAT TERM 3224 2454696 - 2454663 - T 100 -12.7 -4.04206 | opp_overlap 2454656 2454663, overlap 2454669 GTATGCGTATATAAA GATAAAGCATGAACA AATT CATTCATGCTTTATC TTATAGTTTGTTTAT TERM 3225 2454690 - 2454669 - T 72 -5.9 -4.43283 | opp_overlap 2454663 2454656, overlap 2454663 GTATATAAAGATAAA GCATGAACA AATT CATTCATGC TTTATCTTATAGTTT CLH_2289 2454849 - 2454715 - | hypothetical protein CLH_2290 2455046 - 2454900 - | hypothetical protein CLH_2291 2456176 - 2455133 - | D-galactose-binding periplasmic protein CLH_2292 2456851 - 2456429 - | hypothetical protein CLH_2293 2461305 - 2457001 - | CoA-substrate-specific enzyme activase domain protein TERM 3226 2458944 - 2458954 + g 78 -2.6 -5.77571 | opp_overlap 2458944 AAAAGAAAGGAGAGA TATA TTT TATA TTTTTATTTTTTAAT TERM 3227 2461590 - 2461578 - g 72 -3.4 -5.252 | GATTGTTATAAAAAA TCTG CTACT CAGA AACAAAATGAGGCTT CLH_2294 2461503 - 2461856 + | tetratricopeptide repeat protein TERM 3228 2461889 - 2461853 - T 100 -12.7 -5.25656 | opp_overlap 2461857 2461878 2461881, overlap 2461854 2461857 2461878 2461881 AAAATTATCAAAAAA TTAATATACTTCTTATA TTT TATAAGAAGTATATTAT AAATATGCCTCTTAT TERM 3229 2461888 - 2461854 - T 100 -16.2 -3.72953 | opp_overlap 2461857 2461878 2461881, overlap 2461853 2461857 2461878 2461881 AAATTATCAAAAAAT TAATATACTTCTTATA TTT TATAAGAAGTATATTA TAAATATGCCTCTTA TERM 3230 2461857 - 2461885 + T 100 -13.5 -3.39803 | opp_overlap 2461857 2461854 2461853 2461878 2461881, overlap 2461878 2461881 TTATCAAAAAATTAA TATACTTCTTATA TTT TATAAGAAGTATA TTATAAATATGCCTC TERM 3231 2461885 - 2461857 - T 100 -13.5 -3.96447 | opp_overlap 2461857 2461878 2461881, overlap 2461854 2461853 2461878 2461881 TTATCAAAAAATTAA TATACTTCTTATA TTT TATAAGAAGTATA TTATAAATATGCCTC CLH_2295 2462970 - 2461906 - | transglutaminase domain protein CLH_2296 2463621 - 2462983 - | regulatory protein RecX CLH_2297 2464962 - 2463721 - | peptidase, M16 family CLH_2298 2465168 - 2465839 + | transcriptional regulatory protein ResD CLH_2299 2465839 - 2467347 + | two-component sensor histidine kinase TERM 3232 2467340 - 2467397 + T 100 -17.5 -4.68124 | opp_overlap 2467352, overlap 2467342 2467352 2467356 TTGTTAATGATGATT GTGATTAAAAAAGAAATAAGATAAGGT ATTT ACCTTATCTTATTTCTTTTATTATCCC TTTTCTATATATTAA TERM 3233 2467342 - 2467395 + T 100 -18.7 -2.62789 | opp_overlap 2467352, overlap 2467340 2467352 2467356 GTTAATGATGATTGT GATTAAAAAAGAAATAAGATAAGGT ATTT ACCTTATCTTATTTCTTTTATTATC CCTTTTCTATATATT TERM 3234 2467352 - 2467385 + T 100 -17.1 -4.81863 | opp_overlap 2467352, overlap 2467342 2467340 2467356 ATTGTGATTAAAAAA GAAATAAGATAAGGT ATTT ACCTTATCTTATTTC TTTTATTATCCCTTT TERM 3235 2467385 - 2467352 - T 100 -17.1 -5.14965 | opp_overlap 2467352 2467342 2467340 2467356 ATTGTGATTAAAAAA GAAATAAGATAAGGT ATTT ACCTTATCTTATTTC TTTTATTATCCCTTT TERM 3236 2467356 - 2467381 + T 100 -12.1 -4.92812 | opp_overlap 2467352, overlap 2467352 2467342 2467340 TGATTAAAAAAGAAA TAAGATAAGGT ATTT ACCTTATCTTA TTTCTTTTATTATCC fbp 2469353 - 2467374 - | fructose-1,6-bisphosphatase TERM 3237 2467516 - 2467526 + g 76 -4 -5.39681 | overlap 2467498 2467497 2467495 ACTACAAGAGTTGTA GATA GAA TATC TTTTTCTTTCATTAT TERM 3238 2467692 - 2467704 + g 84 -3.4 -5.77571 | ACCATTAGCCTTTAT TGGA CTTTC TCCA TTTTTCTTTTTTACT TERM 3239 2469307 - 2469320 + g 84 -3.9 -5.80248 | TGCTTGGCTAGTAAT CTAAA ATAC TTTAG TTTTTTTATGTCTTC TERM 3240 2469672 - 2469712 + r 100 -11.5 -4.21676 | opp_overlap 2469676, overlap 2469676 ATCATAATATAATTA AAAAGCATTTTAAAATGTT TTA AACATTTTAAAATGCTTGC TTTTCCATAAATTCT TERM 3241 2469676 - 2469708 + r 100 -16.7 -3.69605 | opp_overlap 2469676, overlap 2469672 TAATATAATTAAAAA GCATTTTAAAATGTT TTA AACATTTTAAAATGC TTGCTTTTCCATAAA TERM 3242 2469708 - 2469676 - R 100 -16.7 -4.99056 | opp_overlap 2469672 2469676 TAATATAATTAAAAA GCATTTTAAAATGTT TTA AACATTTTAAAATGC TTGCTTTTCCATAAA gidA 2470596 - 2469736 - | tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA trx 2470928 - 2470614 - | thioredoxin TERM 3243 2471184 - 2471139 - H 100 -16.7 -5.01535 | opp_overlap 2471113 2471143 2471147 2471177 TTATAATTATAAAAA TAAAGAAAGTCTATAAAACTA AATT TAATTTTATAGACTTTCTTCA TTAGAAATGCTTACA TERM 3244 2471143 - 2471180 + H 100 -13.1 -3.35073 | opp_overlap 2471139, overlap 2471113 2471147 2471177 AATTATAAAAATAAA GAAAGTCTATAAAACTA AATT TAATTTTATAGACTTTC TTCATTAGAAATGCT TERM 3245 2471147 - 2471176 + H 80 -8.1 -4.3255 | opp_overlap 2471139, overlap 2471143 ATAAAAATAAAGAAA GTCTATAAAACTA AATT TAATTTTATAGAC TTTCTTCATTAGAAA CLH_2303 2471572 - 2472132 + | acetyltransferase, gnat family TERM 3246 2472181 - 2472151 - T 76 -9.2 -2.86328 | opp_overlap 2472154, overlap 2472150 2472154 TATTAAATAGACAAG CAATAGGTAGTTTA AAT TTAACTACCTATTA TTATTACTATAAATC TERM 3247 2472154 - 2472178 + T 81 -8.7 -4.0156 | opp_overlap 2472151 2472150 2472154 TAAATAGACAAGCAA TAGGTAGTTTA AAT TTAACTACCTA TTATTATTACTATAA TERM 3248 2472178 - 2472154 - T 79 -8.7 -3.56109 | opp_overlap 2472154, overlap 2472151 2472150 TAAATAGACAAGCAA TAGGTAGTTTA AAT TTAACTACCTA TTATTATTACTATAA CLH_2304 2473930 - 2472224 - | lipid A export ATP-binding/permease protein MsbA CLH_2305 2474635 - 2473964 - | aliphatic sulfonates import ATP-binding protein SsuB TERM 3249 2474315 - 2474328 + g 78 -2.5 -5.85244 | opp_overlap 2474315, overlap 2474313 AAGTCCCAGTGAAGA TAAAA TAGA TTTTA TTTTTTCTTTTAGTT CLH_2306 2475389 - 2474619 - | ABC transporter, permease protein TERM 3250 2475149 - 2475126 - GR 84 -6 -5.30575 | TAAAAATTTAAAAAA GGGATACATA AATG TAAGTACCCC TAAAACTATTGCTAA CLH_2307 2476344 - 2475364 - | ABC transporter, substrate-binding lipoprotein TERM 3251 2476143 - 2476162 + g 71 -8 -3.18433 | overlap 2476141 2476146 TATCTGGTACTTTTT CAATGTTA TAAT TAACATTG TATCCTTTTTGAAAT TERM 3252 2476618 - 2476653 + r 71 -5.8 -4.65584 | gap 1, opp_overlap 2476618 GAAAAATCAAAGAAA GTTTAATACTAAA-TAA ATA TTACTTTAGCATTAAAC TTTTATGTACTTTAT TERM 3253 2476653 - 2476618 - R 83 -8 -4.71307 | gap 1, opp_overlap 2476618 GAAAAATCAAAGAAA GTTTAATACTAAA-TAA ATA TTACTTTAGCATTAAAC TTTTATGTACTTTAT CLH_2308 2477084 - 2476665 - | hypothetical protein TERM 3254 2476956 - 2476970 + g 72 -7.2 -3.97401 | overlap 2476964 TTTTATGTCATCCAT CAACTT ACG AAGTTG TTCTTCTGATTTTCT CLH_2309 2477255 - 2477554 + | hypothetical protein TERM 3255 2477581 - 2477608 + T 88 -5 -5.93252 | opp_overlap 2477581 AATATTAATAAAAAA TGATTACTAATT TATT ATTTGGTAATCA TTTTTTATTTTTAAA TERM 3256 2477608 - 2477581 - T 70 -2.8 -5.54885 | opp_overlap 2477581 AATATTAATAAAAAA TGATTACTAATT TATT ATTTGGTAATCA TTTTTTATTTTTAAA asnB 2479543 - 2477699 - | asparagine synthase (glutamine-hydrolyzing) TERM 3257 2478324 - 2478294 - G 70 -8.6 -2.53015 | opp_overlap 2478293 2478301, overlap 2478301 2478304 ATATTTTTTAACTTA TTATTAATTATAGA TTT TCTATCATTAATAA ATCTTGACCATGGGA TERM 3258 2480759 - 2480797 + G 95 -8.4 -4.87626 | opp_overlap 2480770, overlap 2480770 2480792 GAATTTAATTTTTTA TTTCCAAAAGATAGTTAT TCC ATACCTATTTTTTGGCAA TTTTTAATATTAGAA CLH_2311 2479799 - 2481202 + | stage V sporulation protein AF CLH_2312 2482155 - 2481319 - | S1 RNA binding domain CLH_2313 2482688 - 2482179 - | ferripyochelin binding protein CLH_2314 2483016 - 2483825 + | hypothetical protein TERM 3259 2483935 - 2483965 + T 100 -9.8 -4.83759 | opp_overlap 2483935 GCAAAACCACAAAAA TTTCTAAGGTGGTG TTT TGCCCCCTTAGAAA TTTTTAAGTTTAATT TERM 3260 2483965 - 2483935 - T 91 -8.4 -5.09245 | opp_overlap 2483935 GCAAAACCACAAAAA TTTCTAAGGTGG TGTTTTG CCCCCTTAGAAA TTTTTAAGTTTAATT CLH_2315 2484129 - 2484010 - | hypothetical protein CLH_2316 2484524 - 2484189 - | hypothetical protein TERM 3261 2485056 - 2485041 - g 82 -6.2 -5.08255 | opp_overlap 2485040 2485041 ATGGCTAAAATAAAA GAAGTT GTTG AACTTC ATTTGACTACTGGTA CLH_2317 2484753 - 2485220 + | transcriptional regulator, AsnC family CLH_2318 2485299 - 2485499 + | hypothetical protein TERM 3262 2485507 - 2485541 + F 100 -8.2 -5.30448 | gap 1 TGGCATAAACTGATT TTAAGCATC-ATTTC TTTCTT GAAATTGATGCTTAA TTTTTATATTTATTT CLH_2319 2485644 - 2486405 + | hypothetical protein TERM 3263 2486429 - 2486382 - T 100 -17.6 -4.39386 | opp_overlap 2486387 2486400, overlap 2486387 2486400 CTTAAACCATTAAAA GAAAAGATACTAAAAAAAGATT AAAA AATCTTTTTTTAGTATCTTTTT AATTTAGGTCATGTT TERM 3264 2486424 - 2486387 - T 100 -17.5 -5.14626 | opp_overlap 2486387 2486400, overlap 2486382 2486400 ACCATTAAAAGAAAA GATACTAAAAAAAGATT AAAA AATCTTTTTTTAGTATC TTTTTAATTTAGGTC TERM 3265 2486387 - 2486424 + T 100 -17.5 -5.00138 | opp_overlap 2486387 2486382 2486400, overlap 2486400 ACCATTAAAAGAAAA GATACTAAAAAAAGATT AAAA AATCTTTTTTTAGTATC TTTTTAATTTAGGTC TERM 3266 2486411 - 2486400 - T 70 -3 -5.62219 | opp_overlap 2486400 2486387, overlap 2486387 2486382 AAGATACTAAAAAAA GATT AAAA AATC TTTTTTTAGTATCTT TERM 3267 2486400 - 2486411 + T 70 -3 -5.62219 | opp_overlap 2486387 2486382 2486400, overlap 2486387 AAGATACTAAAAAAA GATT AAAA AATC TTTTTTTAGTATCTT CLH_2320 2488207 - 2486456 - | hypothetical protein TERM 3268 2487714 - 2487730 + g 70 -8.1 -2.99257 | opp_overlap 2487713 2487712 ATTTGTCTATAAACT TTAGGTT GAT AACCTAA TACATTTTTTTCAAC CLH_2321 2488426 - 2489292 + | metallo-beta-lactamase family protein TERM 3269 2489380 - 2489409 + F 70 -8 -3.32695 | overlap 2489379 TTATATATATTATGT CCCTTTCATTTT ATATTC ATAATGAAAGGG CTTTATTTATGAAGA gltX 2489447 - 2490904 + | glutamyl-tRNA synthetase TERM 3270 2490957 - 2490933 - T 100 -10 -5.14645 | opp_overlap 2490934, overlap 2490934 ATAATTTAATAAAAA GCCCCTCTAC TAAAT GTAGAGGGGT TTTTAAGGTACCGTA TERM 3271 2490934 - 2490956 + T 100 -13.5 -4.62336 | opp_overlap 2490933 2490934 TAATTTAATAAAAAG CCCCTCTAC TAAAT GTAGAGGGG TTTTTAAGGTACCGT TERM 3272 2490956 - 2490934 - T 100 -13.5 -3.6716 | opp_overlap 2490934, overlap 2490933 TAATTTAATAAAAAG CCCCTCTAC TAAAT GTAGAGGGG TTTTTAAGGTACCGT TERM 3273 2490980 - 2491027 + T 100 -8.8 -5.09426 | overlap 2490981 2490982 GTACCGTATTATTTA GATTTCTTAGCTTTAAATTTAA CATA TTCAATTTAAAGCTAAGAAAAA TTTTTTAAAATTGAA TERM 3274 2490981 - 2491026 + T 95 -12.3 -3.64933 | overlap 2490980 2490982 TACCGTATTATTTAG ATTTCTTAGCTTTAAATTTAA CATA TTCAATTTAAAGCTAAGAAAA ATTTTTTAAAATTGA TERM 3275 2490982 - 2491025 + T 100 -15.8 -2.78237 | overlap 2490981 2490980 ACCGTATTATTTAGA TTTCTTAGCTTTAAATTTAA CATA TTCAATTTAAAGCTAAGAAA AATTTTTTAAAATTG CLH_2323 2491799 - 2491044 - | hypothetical protein TERM 3276 2491219 - 2491237 + g 73 -3.2 -5.55769 | ACATCTTGTTCATTA TAGAGAAG TAT TTTTTCTA TTTTTTCTTCTGGCA TERM 3277 2491657 - 2491670 + g 71 -2.4 -5.38047 | opp_overlap 2491657 CATGCTCCAAAAACT CCAA TACATT TTGG TTTTTTATATACATA CLH_2324 2492542 - 2491814 - | HAD-superfamily subfamily IB hydrolase TERM 3278 2492987 - 2492966 - g 79 -8.9 -3.46407 | overlap 2492963 TATTAGAAAAAATGA TGCTAAAAA TATA TTTTTAGCA GTATAGGGAGGTTTT CLH_2325 2492772 - 2492993 + | hypothetical protein feoB 2493008 - 2494771 + | ferrous iron transport protein B TERM 3279 2494789 - 2494757 - T 76 -9.5 -2.76322 | opp_overlap 2494760, overlap 2494764 GTATTTAATATAGGA CGATTAATTATATAA AAC TCATATAATTAATCA TTACACAAAGGTGAT TERM 3280 2494962 - 2495016 + T 100 -14.9 -5.21506 | gap 2, opp_overlap 2494962, overlap 2494976 ATTTTAGATAAGAAA TAGACTATATTT--TAGAGCGTTGATA TGT TATCAACGCTCTTTTAAATATAGTCTA TTTTTATATTATTCT TERM 3281 2495016 - 2494962 - T 100 -14.9 -4.39329 | gap 2, opp_overlap 2494962 2494976 ATTTTAGATAAGAAA TAGACTATATTT--TAGAGCGTTGATA TGT TATCAACGCTCTTTTAAATATAGTCTA TTTTTATATTATTCT TERM 3282 2494976 - 2495000 + T 100 -15.9 -4.2535 | opp_overlap 2494962, overlap 2494962 ATAGACTATATTTTA GAGCGTTGATA TGT TATCAACGCTC TTTTAAATATAGTCT CLH_2327 2496257 - 2495145 - | permease TERM 3283 2496489 - 2496517 + r 79 -8.3 -4.02093 | opp_overlap 2496490, overlap 2496490 ATACGTAAAATAAAA ACAACTAGAAATT TAA AGTTTCTAGTTGC TTCTTATATTATATA TERM 3284 2496516 - 2496490 - R 100 -9.6 -5.48213 | opp_overlap 2496490 2496489 TACGTAAAATAAAAA CAACTAGAAATT TAA AGTTTCTAGTTG CTTCTTATATTATAT TERM 3285 2496490 - 2496516 + r 90 -11.8 -3.00171 | opp_overlap 2496490, overlap 2496489 TACGTAAAATAAAAA CAACTAGAAATT TAA AGTTTCTAGTTG CTTCTTATATTATAT argS 2498230 - 2496539 - | arginyl-tRNA synthetase TERM 3286 2498364 - 2498338 - H 82 -2.3 -6.28967 | opp_overlap 2498338, overlap 2498361 TATAAATAAAAAAAA TTCCTCTCTAA AAAAA TAAGAGACGAA TTATCCGCGGTACCA TERM 3287 2499776 - 2499788 + G 70 -7.7 -3.38224 | opp_overlap 2499773 2499765, overlap 2499773 AATATAAATAGAGCC CATGC TGA GCATG TATTTAACATAACCT CLH_2329 2498789 - 2500294 + | Ppx/GppA phosphatase family protein TERM 3288 2500294 - 2500337 + T 100 -12.8 -4.28791 | opp_overlap 2500299, overlap 2500299 AGTAAAACAAATATA AAAAATGAGTTCGAAAATTT TATT ACATTTTCGAACTCATTTTA TTTATCTTATAAATT TERM 3289 2500299 - 2500332 + T 100 -12.7 -5.11389 | opp_overlap 2500299, overlap 2500294 AACAAATATAAAAAA TGAGTTCGAAAATTT TATT ACATTTTCGAACTCA TTTTATTTATCTTAT TERM 3290 2500332 - 2500299 - T 100 -12.7 -5.61913 | opp_overlap 2500299 2500294 AACAAATATAAAAAA TGAGTTCGAAAATTT TATT ACATTTTCGAACTCA TTTTATTTATCTTAT CLH_2330 2501063 - 2500425 - | peptidase, M50 family TERM 3291 2500531 - 2500515 - G 77 -5.3 -5.03747 | opp_overlap 2500517 2500530 AAATCCTCCAAAAAA TATTATT CCT AATAATA TTAACATTTGATATT CLH_2331 2502336 - 2501305 - | hypothetical protein CLH_2332 2503398 - 2502355 - | hypothetical protein TERM 3292 2503262 - 2503245 - G 74 -6.3 -4.59027 | AAGGACCATATAAAA GTACAAG AGGG CCTGTAC AAGCTGTGAAAATAA CLH_2333 2503653 - 2504621 + | biotin-[acetyl-CoA-carboxylase] ligase TERM 3293 2504841 - 2504816 - T 88 -8.3 -4.8048 | overlap 2504818 CGTGTACATTAAAAA TAGGCTCTGCT TTAA AACAGAGCCTT AAAATATATACTTCT TERM 3294 2504839 - 2504818 - T 100 -10.9 -4.02302 | overlap 2504816 TGTACATTAAAAATA GGCTCTGCT TTAA AACAGAGCC TTAAAATATATACTT asnA 2505868 - 2504855 - | aspartate--ammonia ligase TERM 3295 2505966 - 2505932 - R 86 -7.9 -4.73388 | gap 1 AATGTTTAGTAAAAA GGAGGTCCTAGAATGC ATTT GCATACTTG-ACCTCC TAAACATCCGTATTT CLH_2335 2506977 - 2506027 - | L-lactate dehydrogenase TERM 3296 2506360 - 2506371 + g 77 -3 -5.74122 | TATTTCTTCATCCCA TTCT AAAG AGAA TTTTTTTGTATAATC TERM 3297 2507146 - 2507136 - H 72 -4 -5.42259 | opp_overlap 2507136, overlap 2507121 TTATTTCTAAAAAAA TAAG TTC CTTA TTTCTTTCTAAGTCA TERM 3298 2507262 - 2507282 + H 77 -6.9 -4.61852 | ATATAATTAGATTTA GGCATTAAT TAG AATAATGCC TTTATTTGTAGTATT CLH_2336 2507347 - 2507961 + | exonuclease, RNase T and DNA polymerase III TERM 3299 2507977 - 2507989 + F 73 -3.5 -5.47431 | TATATATTTTTTTCT TAATA ATA TATTA TTTTTTATATATTAA TERM 3300 2508108 - 2508051 - f 100 -16.3 -2.79684 | opp_overlap 2508054, overlap 2508054 2508065 TTATCAATTTAATTA TAATATTTAGAGAATTACATTAATTTT TATT AACATTAATATAATCCTCTAAATATTA TAATAGTATCAACAA TERM 3301 2508105 - 2508054 - f 100 -13.6 -3.54109 | opp_overlap 2508054, overlap 2508051 2508065 TCAATTTAATTATAA TATTTAGAGAATTACATTAATTTT TATT AACATTAATATAATCCTCTAAATA TTATAATAGTATCAA TERM 3302 2508054 - 2508105 + F 82 -9.2 -3.45849 | opp_overlap 2508054 2508051 2508065 TCAATTTAATTATAA TATTTAGAGAATTACATTAATTTT TATT AACATTAATATAATCCTCTAAATA TTATAATAGTATCAA CLH_2337 2508151 - 2508312 + | rubredoxin TERM 3303 2508508 - 2508479 - T 100 -12.4 -6.01369 | opp_overlap 2508479 TAAAGAATAAAAAAA TAAGGAGCTTTT TATTTT AAAAGCTCCTTA TTTCTATTTATCATC TERM 3304 2508479 - 2508508 + T 100 -12.4 -4.41609 | opp_overlap 2508479 TAAAGAATAAAAAAA TAAGGAGCTTTT TATTTT AAAAGCTCCTTA TTTCTATTTATCATC pflA 2509222 - 2508512 - | pyruvate formate-lyase 1-activating enzyme TERM 3305 2509274 - 2509243 - R 80 -8.2 -4.3739 | gap 1, opp_overlap 2509243 2509248, overlap 2509244 TATCCTCCTAGAAAA CTACACCCCTGTCAT TTA AT-ACAGGGGTATAA TTTAAGTGTGTTTAT TERM 3306 2509273 - 2509244 - R 80 -9.5 -3.22113 | gap 1, opp_overlap 2509243 2509248, overlap 2509243 ATCCTCCTAGAAAAC TACACCCCTGTCAT TTA AT-ACAGGGGTATA ATTTAAGTGTGTTTA TERM 3307 2509248 - 2509269 + r 71 -8.1 -3.03038 | gap 1, opp_overlap 2509244 2509243, overlap 2509243 TCCTAGAAAACTACA CCCCTGTCAT TTA AT-ACAGGGG TATAATTTAAGTGTG pflB 2511613 - 2509385 - | formate acetyltransferase TERM 3308 2509713 - 2509735 + g 76 -9.2 -3.1085 | opp_overlap 2509712 2509715, overlap 2509715 GCAACTGAATTTAAT GATGCTAATG CTC CATTTGCATC TCTTCCGTGCATTGG TERM 3309 2509792 - 2509806 + g 77 -6.4 -4.65916 | CTTTCTTTCTTCCAT CTGGTG TTG TACCAG TTTTCTTACCATACA TERM 3310 2513170 - 2513198 + G 77 -7.5 -4.11805 | opp_overlap 2513169 2513168, overlap 2513171 2513173 TTATATGTACCAACT CCATTAGGATATG TTT CAGATCCTAATGA TTTATCTCCTATAAT TERM 3311 2513171 - 2513197 + G 88 -11 -3.0636 | opp_overlap 2513169 2513168, overlap 2513170 2513173 TATATGTACCAACTC CATTAGGATATG TTT CAGATCCTAATG ATTTATCTCCTATAA CLH_2340 2512039 - 2513415 + | hypothetical protein TERM 3312 2513423 - 2513413 - T 73 -2.6 -5.69379 | overlap 2513417 ACAGAATTAAAAAAA TAAA TAA TTTA ATTAAAAGTTACTTT TERM 3313 2513468 - 2513417 - T 78 -5.7 -5.25976 | gap 1, opp_overlap 2513425, overlap 2513413 2513425 2513431 AATTAAAAAAATAAA TAATTTAATTAAAAGTTACTTTAA ACATA TTAAAGTAACTTTTAATTTT-TTA TTAATATTATACATA TERM 3314 2513461 - 2513425 - T 100 -14.2 -3.38207 | opp_overlap 2513425, overlap 2513417 2513431 AAATAAATAATTTAA TTAAAAGTTACTTTAA ACATA TTAAAGTAACTTTTAA TTTTTTATTAATATT TERM 3315 2513425 - 2513461 + T 100 -14.2 -5.54885 | opp_overlap 2513425 2513417 2513431 AAATAAATAATTTAA TTAAAAGTTACTTTAA ACATA TTAAAGTAACTTTTAA TTTTTTATTAATATT TERM 3316 2513455 - 2513431 - T 86 -8.8 -4.46267 | opp_overlap 2513425, overlap 2513425 2513417 ATAATTTAATTAAAA GTTACTTTAA ACATA TTAAAGTAAC TTTTAATTTTTTATT pyrE 2514235 - 2513561 - | orotate phosphoribosyltransferase pyrD 2515180 - 2514284 - | dihydroorotate dehydrogenase CLH_2343 2515945 - 2515202 - | dihydroorotate dehydrogenase electron transfer subunit pyrF 2516831 - 2515959 - | orotidine 5'-phosphate decarboxylase CLH_2345 2518139 - 2516943 - | dihydroorotase, multifunctional complex type CLH_2346 2518595 - 2518164 - | aspartate carbamoyltransferase regulatory chain pyrB 2519520 - 2518597 - | aspartate carbamoyltransferase TERM 3317 2519722 - 2519698 - R 100 -8 -5.63504 | gap 1 AATTGTATAAAAAAA GCCTT-CTTCA CATG TGAAGGAAGGC ATAATAATCCTGTAA TERM 3318 2519798 - 2519810 + r 70 -4.9 -4.84146 | opp_overlap 2519787 2519782, overlap 2519782 2519801 AAAGGTTATTCTTTG TGTTA GAA TAACA TTTATTTTATGTCCT TERM 3319 2520047 - 2520009 - R 100 -7.7 -5.63374 | gap 1, overlap 2520000 CTAACAGCAAAAAAA GTTGCACTAGTAAA-CAT TCAA ATAATTCACCAGTGCAAC TTTACATATTACAAA uppP 2520940 - 2520083 - | undecaprenyl-diphosphatase UppP CLH_2349 2522134 - 2521007 - | hypothetical protein TERM 3320 2522028 - 2522045 + g 81 -7.1 -4.64861 | opp_overlap 2522023 2522027, overlap 2522023 TCCCAAGTTAGAACT TCAAGTT CTTT AACTTGA TTTGTTTTAGAAAAA CLH_2350 2524067 - 2522298 - | tetratricopeptide repeat domain protein TERM 3321 2523316 - 2523332 + g 76 -6.7 -4.44914 | CTTATTAATTTTTCT TTATCAT ATA ATGATAA TTCTTTTATTCCCTC CLH_2351 2524263 - 2525624 + | Mur ligase family protein CLH_2352 2525643 - 2526374 + | glutamine amidotransferase, CobB/CobQ family TERM 3322 2526422 - 2526387 - T 100 -10.8 -4.86939 | opp_overlap 2526387 TAATAAATTTAAAAA TTAGCTAATATCAA GGTTCATA TTGATATTAGCTAA TTTTTATTTACTATT TERM 3323 2526387 - 2526422 + T 100 -10.8 -5.37171 | opp_overlap 2526387 TAATAAATTTAAAAA TTAGCTAATATCAA GGTTCATA TTGATATTAGCTAA TTTTTATTTACTATT CLH_2353 2527196 - 2526450 - | peptidoglycan N-acetylglucosamine deacetylase TERM 3324 2527343 - 2527324 - H 72 -3.6 -5.33405 | opp_overlap 2527324, overlap 2527318 TTCAGGAAATAAAAA GGATTTTT TAAG AAAATTCC TTATATTATGTCTTG CLH_2354 2527439 - 2528716 + | D-alanyl-D-alanine carboxypeptidase family TERM 3325 2529108 - 2529081 - g 70 -6.4 -4.23528 | overlap 2529076 2529101 TAATTTAAAATTAAA TGAAGGCGTA AAAGTAAA TACACCTTCA TTAGAAGATGCCCCA CLH_2355 2528776 - 2529375 + | flavoredoxin TERM 3326 2529426 - 2529378 - T 100 -17.2 -4.97824 | opp_overlap 2529383, overlap 2529383 AAAATCTAAATAAAA TAAAATCCACATACAAAAACCT CTTAT AGATTTTTGTATGTGGATTTTT GTTATAAACTTTTTT TERM 3327 2529421 - 2529383 - T 100 -17.1 -5.34857 | opp_overlap 2529383, overlap 2529378 CTAAATAAAATAAAA TCCACATACAAAAACCT CTTAT AGATTTTTGTATGTGGA TTTTTGTTATAAACT TERM 3328 2529383 - 2529421 + T 100 -14.9 -5.19328 | opp_overlap 2529378 2529383 CTAAATAAAATAAAA TCCACATACAAAAACCT CTTAT AGATTTTTGTATGTGGA TTTTTGTTATAAACT TERM 3329 2529513 - 2529524 + T 70 -4.4 -4.99134 | opp_overlap 2529513 TATATATTTAAAAAT TCCA TGAA TGGA TTTTTCCTTTACCCT CLH_2356 2529886 - 2529548 - | ArsC family CLH_2357 2530102 - 2531055 + | putative acyltransferase TERM 3330 2531102 - 2531044 - T 83 -6 -5.43329 | gap 3, opp_overlap 2531051 2531058, overlap 2531046 2531051 AAAAATAAAATAAAA TATAAAATATAAAATAGAGGCTATCTTAA TATT TAAAGATAGCCTCTATTTTATATTTT--- TTGAACTGAAGAATT TERM 3331 2531103 - 2531046 - T 100 -20.5 -4.26966 | opp_overlap 2531051 2531058, overlap 2531044 2531051 AAATAAAATAAAATA TAAAATATAAAATAGAGGCTATCTTAA TATT TAAAGATAGCCTCTATTTTATATTTTT TGAACTGAAGAATTT TERM 3332 2531098 - 2531051 - T 100 -20.4 -5.00136 | opp_overlap 2531051 2531058, overlap 2531044 2531046 AAATAAAATATAAAA TATAAAATAGAGGCTATCTTAA TATT TAAAGATAGCCTCTATTTTATA TTTTTTGAACTGAAG TERM 3333 2531051 - 2531098 + T 100 -20.4 -5.0538 | opp_overlap 2531051 2531044 2531046, overlap 2531058 AAATAAAATATAAAA TATAAAATAGAGGCTATCTTAA TATT TAAAGATAGCCTCTATTTTATA TTTTTTGAACTGAAG TERM 3334 2531058 - 2531091 + T 100 -14.1 -5.06052 | opp_overlap 2531051 2531044 2531046, overlap 2531051 ATATAAAATATAAAA TAGAGGCTATCTTAA TATT TAAAGATAGCCTCTA TTTTATATTTTTTGA CLH_2358 2531741 - 2531094 - | membrane protein, DedA family CLH_2359 2533195 - 2531858 - | mate efflux family protein TERM 3335 2533315 - 2533277 - R 87 -6.3 -5.67529 | gap 1, opp_overlap 2533277 AAGTAAAAATAAAAA GCTCAAAAGA-GAAAT TTAAATTC ATTTCATCCTTTGAGC TTTATTATTATTATA TERM 3336 2533507 - 2533480 - R 100 -8.7 -5.96219 | opp_overlap 2533479 2533480 TATGGATAAAAAAAA TTAGAAGATAA AATAAA TTATCTTCTAA CTTCTAATAATTACT TERM 3337 2533480 - 2533507 + r 72 -8.7 -2.68282 | opp_overlap 2533480, overlap 2533479 TATGGATAAAAAAAA TTAGAAGATAA AATAAA TTATCTTCTAA CTTCTAATAATTACT CLH_2360 2535310 - 2533547 - | surface protein PspA TERM 3338 2536371 - 2536354 - g 80 -5.7 -5.02606 | opp_overlap 2536354 2536356 GATGAAATAACAAAA GATTATA ATGT TATAATC TATATGGGTGATGAT TERM 3339 2536475 - 2536461 - g 72 -3.6 -5.30616 | TGATGTAAATAAAAA TGAATT CGG AACTCA TTTTATAATTTTACC CLH_2361 2535733 - 2536605 + | 5'-nucleotidase, lipoprotein e(P4) family TERM 3340 2536629 - 2536666 + T 77 -8.7 -3.36648 | opp_overlap 2536629 2536628 CCAAATAATGTAAAT GCCTAAAGTAAAG TTATGATTTACC CTTTACTTTAGGC TTATAGAATATATTA TERM 3341 2536666 - 2536629 - T 73 -8.7 -2.92938 | opp_overlap 2536629, overlap 2536628 CCAAATAATGTAAAT GCCTAAAGTAAAG TTATGATTTACC CTTTACTTTAGGC TTATAGAATATATTA CLH_2362 2538416 - 2536734 - | methyl-accepting chemotaxis sensory transducer TERM 3342 2537130 - 2537148 + g 76 -8.9 -3.05384 | overlap 2537123 2537122 AGCTTCTCCAGCTCT TGCTGCT TCTAT AGCAGCA TTAAGTGCCAAAAGA TERM 3343 2538154 - 2538173 + g 71 -8 -3.16914 | opp_overlap 2538158, overlap 2538151 2538153 AACTCTTTTGCTTTT GAAACAAA TTCA TTTGTTTC CTTTTCATCAGTAGT TERM 3344 2538731 - 2538705 - H 85 -9.8 -3.224 | opp_overlap 2538703 2538694 2538704 2538710, overlap 2538694 2538710 TAATTTTTTATAATA TAAAATATATTT TAA AAATATATTTTA ATTAGTACAAAAAGC TERM 3345 2538726 - 2538710 - H 73 -5.3 -4.73682 | opp_overlap 2538703 2538694 2538704 2538710, overlap 2538694 2538705 TTTTATAATATAAAA TATATTT TAA AAATATA TTTTAATTAGTACAA CLH_2363 2538944 - 2540605 + | surface protein PspC TERM 3346 2540665 - 2540708 + T 100 -15.7 -4.5477 | opp_overlap 2540665 GTTTAAGTTAAATAA TAGTAGACAAAGGTCAATT AAATAA AATTCACCTTTGTCTACTA TTTTCTAATATATTA TERM 3347 2540708 - 2540665 - T 100 -15.7 -4.0098 | opp_overlap 2540665 GTTTAAGTTAAATAA TAGTAGACAAAGGTCAATT AAATAA AATTCACCTTTGTCTACTA TTTTCTAATATATTA CLH_2364 2541308 - 2540727 - | chloramphenicol acetyltransferase TERM 3348 2541107 - 2541090 - G 72 -7.1 -3.96051 | opp_overlap 2541089 ACATAATACATTAAA TGGATAA GTAG TTATCCA ATCATTTCTATGATT TERM 3349 2541765 - 2541737 - H 81 -8.9 -3.94877 | opp_overlap 2541737 ACCGCGGAATAATAA CTTCTGCCTCT GTAATTA AGAGGCAGGAG TTTTTTTAATTGGCT TERM 3350 2541737 - 2541765 + H 100 -11.1 -5.64006 | opp_overlap 2541737 ACCGCGGAATAATAA CTTCTGCCTCT GTAATTA AGAGGCAGGAG TTTTTTTAATTGGCT CLH_2365 2541880 - 2543052 + | sodium:dicarboxylate symporter family protein TERM 3351 2543101 - 2543063 - f 72 -7.6 -3.56921 | opp_overlap 2543065 2543068, overlap 2543061 2543065 2543068 CTTAATATAAGAATA GATAACTCCCAAAGGT AAAATAA ACTTTTGGGAGTTATA ATCTCTAATTAAATA TERM 3352 2543099 - 2543065 - f 87 -10.2 -3.35002 | opp_overlap 2543065 2543068, overlap 2543063 2543061 2543068 TAATATAAGAATAGA TAACTCCCAAAGGT AAAATAA ACTTTTGGGAGTTA TAATCTCTAATTAAA TERM 3353 2543065 - 2543099 + F 88 -12.4 -2.73067 | opp_overlap 2543065 2543063 2543061 2543068, overlap 2543068 TAATATAAGAATAGA TAACTCCCAAAGGT AAAATAA ACTTTTGGGAGTTA TAATCTCTAATTAAA TERM 3354 2543068 - 2543096 + F 83 -9.7 -3.50893 | opp_overlap 2543065 2543063 2543061 2543068, overlap 2543065 TATAAGAATAGATAA CTCCCAAAGGT AAAATAA ACTTTTGGGAG TTATAATCTCTAATT TERM 3355 2543096 - 2543068 - f 73 -7.5 -3.78442 | opp_overlap 2543068 2543065, overlap 2543065 2543063 2543061 TATAAGAATAGATAA CTCCCAAAGGT AAAATAA ACTTTTGGGAG TTATAATCTCTAATT TERM 3356 2543142 - 2543121 - f 75 -6.7 -4.40184 | CTAATTAAATATAAA TATTCCCTA ATTA TAGGAAATA AAATTTTATACGATA TERM 3357 2543185 - 2543232 + F 74 -8.3 -3.35996 | gap 1, opp_overlap 2543185 2543189, overlap 2543189 2543209 2543225 TTCTTAAATCACATA TAAATCTAAAATTCT-AAGA TTCTTTTCT TCTTGAGAATTTTAGATTTA TTATAAATAAAACTA TERM 3358 2543232 - 2543185 - f 71 -8.3 -3.05769 | gap 1, opp_overlap 2543185 2543189 2543209 2543225, overlap 2543189 TTCTTAAATCACATA TAAATCTAAAATTCT-AAGA TTCTTTTCT TCTTGAGAATTTTAGATTTA TTATAAATAAAACTA CLH_2366 2543389 - 2543784 + | hypothetical protein TERM 3359 2543808 - 2543835 + T 100 -12.2 -4.32857 | opp_overlap 2543808 TAGAAAGTATAAAAA GGTGTATTGTGA AGTT TTACAATACACC TTTATGTTTCCAAGA TERM 3360 2543835 - 2543808 - T 100 -10 -5.06735 | opp_overlap 2543808 TAGAAAGTATAAAAA GGTGTATTGTGA AGTT TTACAATACACC TTTATGTTTCCAAGA CLH_2367 2544372 - 2543866 - | hypothetical protein CLH_2368 2544891 - 2544595 - | hypothetical protein CLH_2369 2545240 - 2544947 - | hypothetical protein CLH_2370 2545557 - 2545390 - | DNA polymerase, beta domain protein region CLH_2371 2546458 - 2545766 - | filamentation induced by cAMP protein Fic TERM 3361 2546602 - 2546628 + r 95 -11.7 -3.41325 | opp_overlap 2546597, overlap 2546600 2546624 AATTATAGCACATTT TCTAAGGTGGT ATTTC GCCACCTTAGA TGTTGTTAAAATCTA CLH_2372 2546797 - 2546684 - | hypothetical protein CLH_2373 2547145 - 2546840 - | hypothetical protein CLH_2374 2547290 - 2547571 + | hypothetical protein CLH_2375 2547591 - 2547830 + | hypothetical protein TERM 3362 2547864 - 2547828 - T 95 -10.3 -3.87583 | opp_overlap 2547828 2547831, overlap 2547831 AAAGCTAAATGGAAA TAATCTCTAAGGTGGTA TTT TGCCTCCTTAGAAATTA TATATATCAACATTG TERM 3363 2547828 - 2547864 + T 85 -10.3 -2.99947 | opp_overlap 2547828 2547831, overlap 2547831 AAAGCTAAATGGAAA TAATCTCTAAGGTGGTA TTT TGCCTCCTTAGAAATTA TATATATCAACATTG TERM 3364 2547831 - 2547861 + T 72 -7.6 -3.64198 | opp_overlap 2547828 2547831, overlap 2547828 GCTAAATGGAAATAA TCTCTAAGGTGGTA TTT TGCCTCCTTAGAAA TTATATATATCAACA TERM 3365 2547861 - 2547831 - T 77 -7.6 -4.05026 | opp_overlap 2547831 2547828, overlap 2547828 GCTAAATGGAAATAA TCTCTAAGGTGGTA TTT TGCCTCCTTAGAAA TTATATATATCAACA CLH_2376 2548934 - 2548473 - | spermine/spermidine acetyltransferase TERM 3366 2549040 - 2549068 + H 93 -4.1 -6.36459 | opp_overlap 2549041 2549049, overlap 2549041 2549042 GATGCCTTTTAATTG ATTTTTAAATATA TTC TATATTTAAAAGC TTTTTTTTTATTAGA TERM 3367 2549041 - 2549067 + H 81 -7.6 -4.39435 | opp_overlap 2549041 2549049, overlap 2549040 2549042 ATGCCTTTTAATTGA TTTTTAAATATA TTC TATATTTAAAAG CTTTTTTTTTATTAG TERM 3368 2549042 - 2549066 + H 75 -8.9 -3.21221 | opp_overlap 2549041 2549049, overlap 2549041 2549040 TGCCTTTTAATTGAT TTTTAAATATA TTC TATATTTAAAA GCTTTTTTTTTATTA CLH_2377 2549300 - 2550292 + | penicillin acylase TERM 3369 2550333 - 2550369 + T 100 -10.3 -4.49344 | opp_overlap 2550333 TTTAACCATACTTAA TGACCTGTCCACTAT CTACTTA ATAATGGGCAGGTCA TTTTCTAGTACCTTT TERM 3370 2550369 - 2550333 - T 90 -11 -3.16267 | opp_overlap 2550333 TTTAACCATACTTAA TGACCTGTCCACTATC TACTT AATAATGGGCAGGTCA TTTTCTAGTACCTTT CLH_2378 2551864 - 2550524 - | inner membrane protein YicO TERM 3371 2551926 - 2551910 - R 78 -6.7 -4.77165 | overlap 2551919 2551920 TTCTTTATAAGAAAA TGATTAA TAC TTAATCA ACTACTTGATCAAAT TERM 3372 2552072 - 2552037 - R 100 -10 -5.4505 | gap 1, opp_overlap 2552049 TTTTGCAATAAAAAA GACCACAACAAATAGCT AAA AGCTATT-ATTGTAGTC AGGTAATATCGGCAC TERM 3373 2552282 - 2552250 - R 82 -8.6 -4.52857 | opp_overlap 2552253, overlap 2552253 ACTTTCTACATAAAA TAACCCTAAAAGTA TATTT TACCTTTAGGGTTT ATCAATTTTAAATTT TERM 3374 2552253 - 2552279 + r 79 -8.1 -4.06179 | opp_overlap 2552250 2552253 TTCTACATAAAATAA CCCTAAAAGTA TATTT TACCTTTAGGG TTTATCAATTTTAAA TERM 3375 2552279 - 2552253 - R 100 -10.3 -4.38141 | opp_overlap 2552253, overlap 2552250 TTCTACATAAAATAA CCCTAAAAGTA TATTT TACCTTTAGGG TTTATCAATTTTAAA CLH_2379 2552696 - 2552463 - | hypothetical protein CLH_2380 2553183 - 2552698 - | hypothetical protein CLH_2381 2553407 - 2553180 - | hypothetical protein CLH_2382 2553821 - 2554849 + | putative ABC transporter, substrate-binding protein CLH_2383 2554869 - 2555636 + | aliphatic sulfonates import ATP-binding protein SsuB TERM 3376 2555899 - 2555885 - g 74 -8.6 -3.16564 | GCTTCACCTTAGGAA CTGTTC TTG GAACAG CAATTGCCGTAATTT CLH_2384 2555629 - 2556429 + | ABC transporter, permease protein TERM 3377 2556505 - 2556546 + F 100 -15.7 -4.23007 | opp_overlap 2556513, overlap 2556513 TCACTATACTCACTC TAATAAAAGATTTTTAGAA TTAT TTCTGAAAATCTTTTATTA TTTTGGCGTTATATA TERM 3378 2556513 - 2556538 + F 95 -8.5 -5.093 | opp_overlap 2556513, overlap 2556505 CTCACTCTAATAAAA GATTTTTAGAA TTAT TTCTGAAAATC TTTTATTATTTTGGC TERM 3379 2556538 - 2556513 - f 74 -6.3 -4.65916 | opp_overlap 2556513 2556505 CTCACTCTAATAAAA GATTTTTAGAA TTAT TTCTGAAAATC TTTTATTATTTTGGC TERM 3380 2556681 - 2556695 + G 70 -5.8 -4.39448 | opp_overlap 2556680 2556678, overlap 2556678 2556693 ACAAGATGAAATTAT TTAAAG AAG CTTTAA TTATTTTAATTATTT TERM 3381 2556746 - 2556762 + G 79 -9.5 -3.22653 | opp_overlap 2556749, overlap 2556729 TCATCTTTCTTTAAT TTACCTG TAC CAGGTAA TATTATAGGAATGAT CLH_2385 2556671 - 2557057 + | LrgA family protein CLH_2386 2557041 - 2557754 + | LrgB family protein TERM 3382 2557795 - 2557781 - T 76 -4.4 -5.32882 | opp_overlap 2557783, overlap 2557759 TATTATTACAAAAAA TATTTT ATA AAAATA GTATCCATCTAACAA TERM 3383 2557815 - 2557853 + T 100 -21.4 -5.63103 | opp_overlap 2557815 CCATCTAACAAAAAA GACGTTGCAAAATTAACT TAA GGTTAATTTTGCAACGTC TTTTTTTAGTTGAAA TERM 3384 2557853 - 2557815 - T 100 -20.7 -5.4833 | opp_overlap 2557815 CCATCTAACAAAAAA GACGTTGCAAAATTAAC TTAAG GTTAATTTTGCAACGTC TTTTTTTAGTTGAAA CLH_2387 2560350 - 2558194 - | DNA topoisomerase TERM 3385 2558872 - 2558888 + g 75 -3.7 -5.43414 | CTTACCGCAAGTTTC CATAACT CTA AGTAATG TTTTTTCTGTATGAT TERM 3386 2559747 - 2559758 + g 70 -3 -5.27476 | GTAATAATACTCTAC CTAT GTTA ATAG TTTTATTTTCTTCAA TERM 3387 2559854 - 2559866 + g 80 -6.3 -4.93079 | CCTATTCCTGCATCT TGCAA AAA TTGCA TTTCTTTATTTTCTT TERM 3388 2560465 - 2560423 - R 91 -7.3 -5.52079 | gap 1, opp_overlap 2560423 ACATTAAAACAAAAA TAAGGCTAGCTTACTGCA TTCCCGTC TGCAGCAA-CTAACCTTA TTTTTTAGCATCTTT CLH_2388 2561000 - 2560500 - | TspO/MBR family protein CLH_2389 2561216 - 2561100 - | hypothetical protein CLH_2390 2563297 - 2561282 - | sensory box histidine kinase TERM 3389 2561386 - 2561410 + g 75 -5.2 -4.84274 | opp_overlap 2561391 CATCACATGCCATAG GAAAGTTTAT CATAA ATAAATTTTC TTTTTCATCTAGTTC CLH_2391 2564621 - 2563299 - | sensor histidine kinase TERM 3390 2563570 - 2563589 + g 70 -5 -4.72029 | overlap 2563574 ATATCAATTATTATT TTTCCTCC AACT GGAGTAAA TTTTATTGAGTTAGA TERM 3391 2565385 - 2565397 + r 70 -4.9 -4.88895 | TTTTCTTTGATTGCA GAAAT ATT ATTTC TTTATTTCTTTATTT TERM 3392 2565487 - 2565449 - R 100 -10.6 -5.10064 | opp_overlap 2565452 2565485 TTTAACACATAAAAA TAAGAGATGAAACAATAA TAA CTATAATTTCATCTCTTA ATAATTAATTTTAAT CLH_2392 2567780 - 2565498 - | phage infection protein CLH_2393 2570065 - 2567792 - | phage infection protein TERM 3393 2570130 - 2570076 - R 75 -9.3 -2.62043 | gap 1, opp_overlap 2570086, overlap 2570073 TTCATAATTAATTTA TTA-TTGGTATTTATAATATAATA CTATCATT TATTACATTATAAATACCAACTAA ATCCTCCTATCATTA TERM 3394 2570388 - 2570364 - R 88 -11.7 -2.86432 | opp_overlap 2570370, overlap 2570370 TTTAATATTATCACA TTAAAATGACT ATA AGTCATTTTAA CAAAAATTGCAACCC TERM 3395 2570382 - 2570370 - R 72 -6.3 -4.37502 | opp_overlap 2570370, overlap 2570364 ATTATCACATTAAAA TGACT ATA AGTCA TTTTAACAAAAATTG TERM 3396 2570462 - 2570503 + r 100 -17.8 -4.23615 | opp_overlap 2570462, overlap 2570494 2570502 TACTCTAATTAAAAA TAACATACGCATAATTAT ATACTA ATAATTATGCGTATGTTA TTTATTAAATATAAT TERM 3397 2570503 - 2570462 - R 100 -17.8 -4.87291 | opp_overlap 2570462 2570494 2570502 TACTCTAATTAAAAA TAACATACGCATAATTAT ATACTA ATAATTATGCGTATGTTA TTTATTAAATATAAT CLH_2394 2571736 - 2570624 - | glycosyl hydrolase, family 8 CLH_2395 2572343 - 2571777 - | transglycosylase, SLT family TERM 3398 2572503 - 2572531 + r 100 -14.9 -2.66559 | opp_overlap 2572503 2572530, overlap 2572495 2572494 2572493 AAAGTTATTATCATA GGTTGATTTTATA GTG TATAAAATCAACC TAATCTGACTATGTT TERM 3399 2572531 - 2572503 - R 100 -14.9 -2.83908 | opp_overlap 2572503 2572495 2572494 2572493, overlap 2572530 AAAGTTATTATCATA GGTTGATTTTATA GTG TATAAAATCAACC TAATCTGACTATGTT TERM 3400 2572580 - 2572535 - R 93 -12.3 -3.29386 | opp_overlap 2572495 2572494 2572493 2572535, overlap 2572530 ATAAAATCAACCTAA TCTGACTATGTTTTTAAAT ATTTTTCA ATTTTAAAACATAGTCAGA TTTTTATTACAGTGA TERM 3401 2572535 - 2572580 + r 100 -12.3 -5.08601 | opp_overlap 2572535 2572530, overlap 2572495 2572494 2572493 ATAAAATCAACCTAA TCTGACTATGTTTTTAAAT ATTTTTCA ATTTTAAAACATAGTCAGA TTTTTATTACAGTGA coaE 2573183 - 2572587 - | dephospho-CoA kinase polA 2575821 - 2573206 - | DNA polymerase I CLH_2398 2576327 - 2577556 + | aminopeptidase II TERM 3402 2577669 - 2577642 - T 75 -9.3 -2.53112 | opp_overlap 2577642, overlap 2577641 ATTGAACTTAGGAAT GCTAAAATGAG TATTGT CCCATTTTAGC TTGCTCTAAATATAA CLH_2399 2578018 - 2577881 - | hypothetical protein dcd 2578633 - 2578112 - | deoxycytidine triphosphate deaminase TERM 3403 2578800 - 2578769 - R 95 -12.6 -3.77808 | opp_overlap 2578771 2578773 2578778, overlap 2578778 TTTATTATAATATAA TAGACCAAATTTGA AAAA TCAAATTTAGTCTA TATAAAAATCTAAGG TERM 3404 2578804 - 2578840 + r 82 -4.5 -5.75538 | opp_overlap 2578809, overlap 2578807 2578809 AAATTTAGTCTATAT AAAAATCTAAGGTGCTG TTT TACCACCTTAGATATTA TTTTTATTTTTTAGG TERM 3405 2578807 - 2578837 + r 76 -6.2 -4.8855 | opp_overlap 2578809, overlap 2578804 2578809 TTTAGTCTATATAAA AATCTAAGGTGCTG TTT TACCACCTTAGATA TTATTTTTATTTTTT TERM 3406 2578809 - 2578835 + r 81 -8.8 -3.97385 | opp_overlap 2578809, overlap 2578807 2578804 TAGTCTATATAAAAA TCTAAGGTGCTG TTT TACCACCTTAGA TATTATTTTTATTTT TERM 3407 2578835 - 2578809 - R 91 -8.1 -4.9792 | opp_overlap 2578809 2578807 2578804 TAGTCTATATAAAAA TCTAAGGTGCT GTTTT ACCACCTTAGA TATTATTTTTATTTT TERM 3408 2578917 - 2578885 - R 100 -11.4 -4.10612 | opp_overlap 2578881, overlap 2578878 ATTTATAACCACAAA GGGATACATTCTCC TTTAT AGAGTATGTATCCC AAAGCTTATTATAAA CLH_2401 2580134 - 2578926 - | isocitrate dehydrogenase, NADP-dependent TERM 3409 2580155 - 2580192 + r 77 -8.7 -3.31232 | opp_overlap 2580164 2580166, overlap 2580154 2580164 2580166 TGCCCCCTTGTTTTA GATTAAAAACACTATGA TTTT TCATAGTATTTTTAACC CTTTTCTCTAAAGAA TERM 3410 2580183 - 2580164 - R 73 -5.8 -4.8048 | opp_overlap 2580155 2580154 2580164 2580166, overlap 2580166 GTTTTAGATTAAAAA CACTATGA TTTT TCATAGTA TTTTTAACCCTTTTC CLH_2402 2581281 - 2580271 - | membrane protein TERM 3411 2581302 - 2581316 + r 76 -4.3 -5.42605 | ATCACCTCTAAATCG CTGTT TTTTT AACAG TTTTCTTTTTCTTGA CLH_2403 2582282 - 2581407 - | LysR-family transcriptional regulator TERM 3412 2582365 - 2582333 - R 86 -11.6 -2.65271 | gap 1, opp_overlap 2582335 2582341, overlap 2582341 TATAACCTGATATTA TAA-AAAAAGGTGGC TTAA GCCACCTTTTTATTA GTTGAGAGTGAAAAC TERM 3413 2582335 - 2582362 + r 93 -11.4 -3.34895 | opp_overlap 2582333 2582341, overlap 2582341 TAACCTGATATTATA AAAAAAGGTGGC TTAA GCCACCTTTTTA TTAGTTGAGAGTGAA TERM 3414 2582356 - 2582341 - R 100 -10.4 -5.69473 | opp_overlap 2582335 2582341, overlap 2582333 GATATTATAAAAAAA GGTGGC TTAA GCCACC TTTTTATTAGTTGAG TERM 3415 2582341 - 2582356 + r 100 -10.4 -5.1963 | opp_overlap 2582341 2582333, overlap 2582335 GATATTATAAAAAAA GGTGGC TTAA GCCACC TTTTTATTAGTTGAG TERM 3416 2582501 - 2582478 - R 82 -9.8 -3.01712 | opp_overlap 2582478 GCTTTTCTTTGAATA TCTTCTTTAT CTAT ATAAAGAAGA TATTCCAACATCGTG TERM 3417 2582478 - 2582501 + r 82 -9.8 -3.03441 | opp_overlap 2582478 GCTTTTCTTTGAATA TCTTCTTTAT CTAT ATAAAGAAGA TATTCCAACATCGTG CLH_2404 2583743 - 2582583 - | stage V sporulation protein E TERM 3418 2583012 - 2582958 - G 93 -12.5 -2.79302 | ATTAGTTCCAGCATA TCCTGGAGGATTATTTGAATCTAAT GATAA ACTATATCCAAATAATCCTCCAGAT CCAATACTAATTAGT TERM 3419 2584036 - 2584011 - R 95 -8.5 -5.24531 | gap 1 ACTCTCCATAAAAAA TAGCAGACTATA TTC TA-AGTCTGCTA AATACTGTGTAAATA CLH_2405 2584640 - 2584101 - | hypothetical protein CLH_2406 2585153 - 2584686 - | putative acetyltransferase TERM 3420 2585414 - 2585358 - R 85 -10.4 -3.04144 | opp_overlap 2585365 2585370 2585404, overlap 2585370 TGGGTAGCGCTAACA TTTCTGACAAAACCCACTCTAAGGAA TATTT TCCCTTAATGTGGGTTTTGTTAATAA TAAATTCTTATATAA TERM 3421 2585365 - 2585407 + r 87 -10.7 -3.23538 | opp_overlap 2585358 2585370, overlap 2585370 2585404 CGCTAACATTTCTGA CAAAACCCACTCTAAGGAA TATTT TCCCTTAATGTGGGTTTTG TTAATAATAAATTCT TERM 3422 2585370 - 2585402 + r 70 -4.8 -4.73613 | opp_overlap 2585358 2585370, overlap 2585365 ACATTTCTGACAAAA CCCACTCTAAGGAA TATTT TCCCTTAATGTGGG TTTTGTTAATAATAA TERM 3423 2585402 - 2585370 - R 93 -9.2 -4.38154 | opp_overlap 2585370 2585365, overlap 2585358 ACATTTCTGACAAAA CCCACTCTAAGGAA TATTT TCCCTTAATGTGGG TTTTGTTAATAATAA TERM 3424 2585476 - 2585492 + r 70 -3.7 -5.1848 | overlap 2585462 ATATTGTTTATGAAC GATATTG TTT CAATTTC TTTTTTCACTTAATT TERM 3425 2585610 - 2585583 - R 73 -8.7 -2.90573 | opp_overlap 2585578 2585595, overlap 2585560 2585582 2585588 TGATTTACATTAAAT TCAAAGATATT GGATAA AATATCTTTGA GGTGATTTAAGTGAA TERM 3426 2585828 - 2585848 + r 75 -7.6 -3.8572 | overlap 2585829 TAGTTTTCTCACTTA TGGCCTTA CAATC TAAGGCCG TTTAGTAGTATTGTG TERM 3427 2585829 - 2585847 + r 73 -8.9 -2.90709 | overlap 2585828 AGTTTTCTCACTTAT GGCCTTA CAATC TAAGGCC GTTTAGTAGTATTGT CLH_2407 2585979 - 2585866 - | hypothetical protein CLH_2408 2586403 - 2586206 - | hypothetical protein CLH_2409 2586628 - 2586515 - | hypothetical protein TERM 3428 2586940 - 2586919 - H 72 -8.9 -2.63631 | opp_overlap 2586921 2586923, overlap 2586908 2586921 TGAATCTTTATATTA TACATAGAT ATGC ATCTATGTA TAATAGGAGAATGAA CLH_2410 2587128 - 2587496 + | arsenical resistance operon trans-acting repressor ArsD TERM 3429 2588548 - 2588538 - g 76 -4 -5.47914 | AAAAATGATAAAAAA GTAA TAT TTAC AATGGGAAAGGGAGG arsA 2587557 - 2589305 + | arsenical pump-driving ATPase ArsA TERM 3430 2589362 - 2589397 + T 91 -10.8 -3.53811 | gap 1, opp_overlap 2589362, overlap 2589365 ATTAAATAATAAAAA GAACTTTAA-TTTAGGA TAT TCCTAAAATTAGAGTTC TTTAAAAAACATAAA TERM 3431 2589397 - 2589362 - T 100 -8.6 -5.39905 | gap 1, opp_overlap 2589362 2589365 ATTAAATAATAAAAA GAACTTTAA-TTTAGGA TAT TCCTAAAATTAGAGTTC TTTAAAAAACATAAA CLH_2412 2589883 - 2589419 - | hypothetical protein TERM 3432 2590241 - 2590203 - R 83 -6.2 -5.32608 | opp_overlap 2590223 2590224 AAAAAAGTTAAAAAA CAGCCTTCCATGATAA TTTAACT TTATCATATAAAGCTG TTATATATGACCTCT CLH_2413 2590612 - 2590313 - | hypothetical protein TERM 3433 2590763 - 2590821 + r 100 -10.3 -5.19261 | gap 1, opp_overlap 2590739 2590742 2590763 2590768 2590770 2590782, overlap 2590740 2590735 2590733 2590769 2590770 TTATATAAATAATAA TAAAATATATATTAAAAAATCTTCCA AAACAAAA TGGAAGACTTTTTAATATA-ATTTTA TTTTTTGCTCCATTT TERM 3434 2590821 - 2590763 - R 100 -12.5 -4.18983 | gap 1, opp_overlap 2590740 2590735 2590733 2590763 2590769 2590770, overlap 2590739 2590742 2590768 2590770 2590782 TTATATAAATAATAA TAAAATATATATTAAAAAATCTTCCA AAACAAAA TGGAAGACTTTTTAATATA-ATTTTA TTTTTTGCTCCATTT TERM 3435 2590816 - 2590768 - R 90 -8 -5.04082 | gap 1, opp_overlap 2590735 2590733 2590763 2590769 2590770, overlap 2590763 2590770 2590782 TAAATAATAATAAAA TATATATTAAAAAATCTTCCA AAACAAAA TGGAAGACTTTTTAATATA-A TTTTATTTTTTGCTC TERM 3436 2590769 - 2590816 + r 91 -7.4 -5.45813 | opp_overlap 2590768 2590763 2590770 2590782, overlap 2590733 2590763 2590770 AAATAATAATAAAAT ATATATTAAAAAATCTTCCA AAACAAAA TGGAAGACTTTTTAATATAA TTTTATTTTTTGCTC TERM 3437 2590815 - 2590770 - R 100 -13.1 -4.10348 | opp_overlap 2590733 2590769 2590763 2590770, overlap 2590768 2590763 2590782 AATAATAATAAAATA TATATTAAAAAATCTTCCA AAACAAAA TGGAAGACTTTTTAATATA ATTTTATTTTTTGCT TERM 3438 2590770 - 2590815 + r 100 -10.9 -3.85047 | opp_overlap 2590770 2590768 2590763 2590782, overlap 2590733 2590769 2590763 AATAATAATAAAATA TATATTAAAAAATCTTCCA AAACAAAA TGGAAGACTTTTTAATATA ATTTTATTTTTTGCT TERM 3439 2590803 - 2590782 - R 73 -4.5 -5.25893 | opp_overlap 2590770 2590769 2590763, overlap 2590770 2590768 2590763 ATATATATTAAAAAA TCTTCCA AAACAAAA TGGAAGA CTTTTTAATATAATT CLH_2414 2591816 - 2590971 - | putative lipoprotein TERM 3440 2591841 - 2591853 + r 72 -4.9 -4.95487 | opp_overlap 2591841, overlap 2591836 TCCTTCTACTTCAAA TACAT AAT ATGTA TTTTATGTTTATTTT TERM 3441 2592062 - 2592025 - R 70 -4.5 -4.98522 | gap 1, opp_overlap 2592025 AATTCCATATAAAAA GGCTATCTTATA-ATT TTTGTGT AATATATAAGATAACC CATTCTTTTATTTAT TERM 3442 2592172 - 2592193 + r 83 -3.9 -5.85425 | gap 1 TCAAGCCATACACCC TCAGTCATAT GAT ATAT-ACTGA TTTTTTCTTTATTTA CLH_2415 2593975 - 2592206 - | membrane associated methyl-accepting chemotaxis protein with hamp domain TERM 3443 2594025 - 2594056 + H 72 -7.6 -3.57441 | opp_overlap 2594024 2594023 2594027 2594030, overlap 2594030 ACTCAATTGAAAATT TATAATAATTAGAA CCGT TTCCAATTATTATA TTATCATTATAAATT CLH_2416 2594440 - 2595732 + | maltose-binding protein CLH_2417 2595984 - 2596850 + | ABC transporter, permease protein CLH_2418 2596850 - 2597755 + | sugar ABC transporter, permease protein TERM 3444 2597787 - 2597775 - T 87 -6.2 -5.72616 | opp_overlap 2597775 ATGTATATAAAAAAA GGGC GTTAT GCCC TTTTTTTAGTGGAGA TERM 3445 2597775 - 2597787 + T 88 -6.9 -5.52384 | opp_overlap 2597775 ATGTATATAAAAAAA GGGCG TTA TGCCC TTTTTTTAGTGGAGA CLH_2419 2598865 - 2597984 - | Ion channel family CLH_2420 2599569 - 2598883 - | hypothetical protein TERM 3446 2599761 - 2599713 - R 80 -9.9 -2.76711 | opp_overlap 2599713, overlap 2599718 GACTTATAAATTAAT TAAAACCCCATAAATAGTCAT TGTGATT AAAACTATTTATGGGGTTATA TTATTTAATATTATT TERM 3447 2599713 - 2599761 + r 77 -7.8 -4.11363 | gap 1, opp_overlap 2599713 2599718 GACTTATAAATTAAT TAAAACCCCATAAATAGTCATTG TGAT TAAA-ACTATTTATGGGGTTATA TTATTTAATATTATT TERM 3448 2599756 - 2599718 - R 100 -9.8 -4.53774 | opp_overlap 2599713, overlap 2599713 ATAAATTAATTAAAA CCCCATAAATAGTCAT TGTGATT AAAACTATTTATGGGG TTATATTATTTAATA CLH_2421 2601808 - 2599775 - | methyl-accepting chemotaxis protein TERM 3449 2601687 - 2601699 + g 71 -2.7 -5.54192 | overlap 2601688 TTATTACTTATAAGT TCATT TTC AATGG TTTTTTTAAATTCAT TERM 3450 2601872 - 2601926 + r 100 -14.9 -3.64912 | opp_overlap 2601864 2601877, overlap 2601877 TTAACCATACTTTAA GAAAATAGCTCTATAAATAGT TTTATTTACAACC ACTATTTATAGAGCTATTTTC TTCTATATATAAATA TERM 3451 2601877 - 2601921 + r 93 -9 -4.88495 | opp_overlap 2601864 2601877, overlap 2601872 CATACTTTAAGAAAA TAGCTCTATAAATAGT TTTATTTACAACC ACTATTTATAGAGCTA TTTTCTTCTATATAT TERM 3452 2601921 - 2601877 - R 89 -9 -4.66987 | gap 1, opp_overlap 2601877 2601872, overlap 2601864 CATACTTTAAGAAAA TAGCTCTATAAATAGT-TTTA TTTA CAACCACTATTTATAGAGCTA TTTTCTTCTATATAT CLH_2422 2604204 - 2602156 - | surface protein PspC TERM 3453 2604451 - 2604427 - R 82 -4.4 -5.64873 | TTCAACAATAAAAAA GACCATAAAT AATTA ATTTATCGTC CCAAATATTATTAAT CLH_2423 2605142 - 2604513 - | type IV pilus assembly protein PilZ TERM 3454 2605187 - 2605203 + H 71 -5.3 -4.61199 | TTCATCTATCTTAGT TTATATT TTA AATATAA TTTTCTATATAAGAT CLH_2424 2605600 - 2606187 + | sigma-70 region 2 domain protein TERM 3455 2606212 - 2606188 - T 95 -11.5 -3.51411 | opp_overlap 2606188, overlap 2606184 ATTTGTGTAAATTAA CCCTAAAGGTA TTT TTCCTTTAGGG TTTTTATTCACCTAG TERM 3456 2606188 - 2606212 + T 100 -11.5 -5.08601 | opp_overlap 2606188 2606184 ATTTGTGTAAATTAA CCCTAAAGGTA TTT TTCCTTTAGGG TTTTTATTCACCTAG CLH_2425 2606354 - 2606241 - | hypothetical protein CLH_2426 2607788 - 2606508 - | integral membrane protein CLH_2427 2608216 - 2607788 - | transcriptional regulator, MarR/EmrR family TERM 3457 2608288 - 2608245 - H 100 -9.4 -4.93177 | gap 1, opp_overlap 2608251 2608254, overlap 2608251 TAAAAATTAATAAAA TATAAATAATTAGTATACAAA CAA TTTGTATACTAATTATT-ATT TCACCTTTTAATTTT TERM 3458 2608251 - 2608283 + H 100 -15.3 -4.00411 | opp_overlap 2608251 2608245, overlap 2608254 TTAATAAAATATAAA TAATTAGTATACAAA CAA TTTGTATACTAATTA TTATTTCACCTTTTA TERM 3459 2608283 - 2608251 - H 100 -15.3 -4.56159 | opp_overlap 2608251 2608254, overlap 2608245 TTAATAAAATATAAA TAATTAGTATACAAA CAA TTTGTATACTAATTA TTATTTCACCTTTTA TERM 3460 2608254 - 2608280 + H 100 -12.6 -4.1023 | opp_overlap 2608251 2608245, overlap 2608251 ATAAAATATAAATAA TTAGTATACAAA CAA TTTGTATACTAA TTATTATTTCACCTT TERM 3461 2608389 - 2608366 - H 100 -11.8 -4.8048 | opp_overlap 2608370 TTCCTATACCAAAAA GAGAGTCGAA CATA TCCGACTCTC TAAAATATAAGTCCG TERM 3462 2608706 - 2608682 - H 78 -7.9 -4.28111 | opp_overlap 2608682 2608683, overlap 2608683 TATACTATTAATAAA CCCTAAAGGTA TTT TTCCTTTAGGA TTTTGTTTTCTTTTA TERM 3463 2608682 - 2608706 + H 81 -5.7 -5.40279 | opp_overlap 2608682 2608683, overlap 2608683 TATACTATTAATAAA CCCTAAAGGTA TTT TTCCTTTAGGA TTTTGTTTTCTTTTA TERM 3464 2608705 - 2608683 - H 80 -9.2 -3.16144 | opp_overlap 2608682 2608683, overlap 2608682 ATACTATTAATAAAC CCTAAAGGTA TTT TTCCTTTAGG ATTTTGTTTTCTTTT TERM 3465 2608683 - 2608705 + H 84 -9.2 -3.80507 | opp_overlap 2608683 2608682, overlap 2608682 ATACTATTAATAAAC CCTAAAGGTA TTT TTCCTTTAGG ATTTTGTTTTCTTTT CLH_2428 2608768 - 2608965 + | hypothetical protein TERM 3466 2609003 - 2608970 - T 87 -6.9 -5.31877 | opp_overlap 2608971, overlap 2608971 ATGTAGCATAAAAAA GGGCAATAAACAT ATTTTTTA ATGTTTATTGCCT TATAAATTTTCTTAT TERM 3467 2608971 - 2609002 + T 91 -10.4 -3.55907 | opp_overlap 2608971 2608970 TGTAGCATAAAAAAG GGCAATAAACAT ATTTTTTA ATGTTTATTGCC TTATAAATTTTCTTA TERM 3468 2609002 - 2608971 - T 91 -10.4 -3.78042 | opp_overlap 2608971, overlap 2608970 TGTAGCATAAAAAAG GGCAATAAACAT ATTTTTTA ATGTTTATTGCC TTATAAATTTTCTTA CLH_2429 2610179 - 2609115 - | hypothetical protein CLH_2430 2610790 - 2610278 - | glutamate rich protein GrpB CLH_2431 2611609 - 2610821 - | hypothetical protein CLH_2432 2611874 - 2611671 - | hypothetical protein TERM 3469 2611986 - 2611970 - R 90 -5.3 -5.88476 | opp_overlap 2611979, overlap 2611979 AAAACAAATAAAAAA TATTAAA TAT TTTAATA AAAATTATATTTATA CLH_2433 2612988 - 2612017 - | transposase, family CLH_2434 2613127 - 2612978 - | resolvase, N- domain CLH_2435 2613756 - 2613322 - | hypothetical protein TERM 3470 2613896 - 2613907 + r 82 -5.8 -5.47218 | opp_overlap 2613896 AAATATTAGAATTTA GCAG AAAA CTGC TTTTTTTAAATCCGA CLH_2436 2614288 - 2613893 - | hypothetical protein TERM 3471 2614534 - 2614489 - H 70 -3.5 -5.36441 | gap 1, opp_overlap 2614518, overlap 2614491 TTTCTATATAAAAAA GAGCCTATAGACATAGACACTT TTT ATATGTCCATCT-TATAGACTC AATTACAAGTAGTAG TERM 3472 2614712 - 2614688 - g 72 -6.6 -4.18018 | gap 1 GTGCTTTATCTAAAA CCCTGA-AAAT TGGA ATTTATCAGGG AGTACAAGCTATTGA TERM 3473 2614799 - 2614759 - g 100 -10.8 -5.84381 | gap 1, opp_overlap 2614733 2614754 2614760, overlap 2614735 2614733 2614760 GTAGTAATAAAAAAA TGGCTATTATCAAGTT-AT AAAA ATCAACTTGATAATAGCCT TATAATTTCTTAATT TERM 3474 2614798 - 2614760 - g 100 -14.3 -4.09002 | gap 1, opp_overlap 2614733 2614760 2614754, overlap 2614735 2614733 2614759 TAGTAATAAAAAAAT GGCTATTATCAAGTT-AT AAAA ATCAACTTGATAATAGCC TTATAATTTCTTAAT TERM 3475 2614760 - 2614798 + G 100 -14.3 -3.69564 | gap 1, opp_overlap 2614735 2614733 2614759 2614760, overlap 2614733 2614754 TAGTAATAAAAAAAT GGCTATTATCAAGTT-AT AAAA ATCAACTTGATAATAGCC TTATAATTTCTTAAT CLH_2438 2614645 - 2614812 + | hypothetical protein CLH_2437 2614991 - 2614809 - | hypothetical protein CLH_2439 2616040 - 2615111 - | hypothetical protein CLH_2440 2616605 - 2616033 - | specialized sigma subunit of RNA polymerase TERM 3476 2616799 - 2616834 + r 91 -10.6 -3.53745 | gap 1, opp_overlap 2616799, overlap 2616795 TCGTCCATAAAAAAA GCCTTACAGT-TCTTGA AAA TCAAGTCGCTGTAAGGC TTCATTTGCCATATC TERM 3477 2616834 - 2616799 - R 100 -8.4 -5.60993 | gap 1, opp_overlap 2616799 2616795 TCGTCCATAAAAAAA GCCTTACAG-TTCTTGA AAA TCAAGTCGCTGTAAGGC TTCATTTGCCATATC CLH_2441 2617818 - 2616955 - | putative 2-hydroxy-3-oxopropionate reductase TERM 3478 2617870 - 2617891 + r 74 -8.9 -3.05159 | opp_overlap 2617864, overlap 2617864 TTTAAAAATGTATCT TTTGATACT ATTT AGTATCAAA TATCATTTGATATCA TERM 3479 2618006 - 2617983 - R 95 -5.4 -6.15536 | opp_overlap 2617983 2617985 AAGCAATAAAAAAAA CATTAGGT TAAAGCAT ACCTAATG TTTTTATCTAATTCT TERM 3480 2617983 - 2618006 + r 75 -5.4 -5.05079 | opp_overlap 2617983, overlap 2617985 AAGCAATAAAAAAAA CATTAGGT TAAAGCAT ACCTAATG TTTTTATCTAATTCT CLH_2442 2618563 - 2618027 - | transcriptional regulatory protein NfxB TERM 3481 2618828 - 2618802 - R 72 -3.9 -5.36441 | gap 1, opp_overlap 2618803 2618805 2618825, overlap 2618805 TTTCTACACAAAAAA TA-AGATAGACT TTTA AGCCTATCTCTA ATTTTAGATTTTTTC TERM 3482 2618824 - 2618805 - R 81 -7.2 -4.77122 | opp_overlap 2618803 2618805, overlap 2618802 CTACACAAAAAATAA GATAGACT TTTA AGCCTATC TCTAATTTTAGATTT CLH_2443 2619605 - 2618847 - | methyltransferase domain family CLH_2444 2620593 - 2619823 - | methyltransferase CLH_2445 2621347 - 2621018 - | TfoX N- domain family protein CLH_2446 2621761 - 2621372 - | glyoxalase family protein CLH_2447 2622340 - 2621831 - | hypothetical protein CLH_2448 2622902 - 2622411 - | MutT/nudix family protein CLH_2449 2623220 - 2622960 - | TfoX C- domain superfamily TERM 3483 2623363 - 2623318 - R 100 -10.7 -5.36441 | gap 1, opp_overlap 2623347 TTTCTATATAAAAAA GAGCCTATAGGCATAGACACTT TTT ATATGTCCAT-CCTATAGACTC AATTACAAGTAGTAG CLH_2450 2624121 - 2623465 - | hypothetical protein TERM 3484 2623597 - 2623587 - G 71 -4 -5.10877 | opp_overlap 2623587, overlap 2623576 ATAACAAATCAAAAA TTTG TGT CAAA TCTTCTTTAAGCTCA CLH_2451 2625007 - 2624165 - | protein YieJ CLH_2452 2625385 - 2625032 - | hypothetical protein CLH_2453 2625666 - 2625418 - | hypothetical protein CLH_2454 2626327 - 2625701 - | hypothetical protein TERM 3485 2626679 - 2626649 - R 85 -8.4 -4.55798 | opp_overlap 2626649 TATTCTAAAGCAAAA TATCTAAGGTGGCA AAA CACCACTTTAGATA TTTCTAGTAATCTTA TERM 3486 2626649 - 2626679 + r 86 -9.2 -4.01853 | opp_overlap 2626649 TATTCTAAAGCAAAA TATCTAAGGTGG CAAAACA CCACTTTAGATA TTTCTAGTAATCTTA TERM 3487 2626746 - 2626712 - R 100 -8.7 -5.24129 | overlap 2626714 TTTTTGCATAAAAAA TTCCCATGTATAAGA TTAAC TCTTGTACATGGGGA AACATATAATTCTAA TERM 3488 2626744 - 2626714 - R 85 -11.3 -2.83915 | overlap 2626712 TTTGCATAAAAAATT CCCATGTATAAGA TTAAC TCTTGTACATGGG GAAACATATAATTCT CLH_2455 2627640 - 2626822 - | hypothetical protein CLH_2456 2628246 - 2627734 - | hypothetical protein TERM 3489 2627823 - 2627813 - G 80 -4 -5.58051 | opp_overlap 2627813 AAACAAAAAAGAAAA TGTA AAA TACA GTTTACTACAGCTGT CLH_2457 2629128 - 2628466 - | BtrU protein CLH_2458 2629743 - 2629303 - | acetyltransferase, gnat family TERM 3490 2629353 - 2629363 + g 70 -5.4 -4.4891 | TATTATCATTTGGAT CGAA TAT TTCG TTTTCTAATACTCCA CLH_2459 2629895 - 2630530 + | snare associated golgi protein TERM 3491 2630585 - 2630548 - T 100 -8.8 -5.16133 | opp_overlap 2630548 ATTAGAATATAAAAA TACCTATAGAATTT AGCTTTTAAA AAATTCTATAGGTA TTTCTTTTACTCTAA TERM 3492 2630548 - 2630585 + T 93 -8.8 -4.75288 | opp_overlap 2630548 ATTAGAATATAAAAA TACCTATAGAATTT AGCTTTTAAA AAATTCTATAGGTA TTTCTTTTACTCTAA CLH_2460 2631887 - 2630592 - | histidine kinase CLH_2461 2632570 - 2631884 - | regulatory protein VanR CLH_2462 2633144 - 2632584 - | ribosomal RNA adenine dimethylase TERM 3493 2633669 - 2633706 + r 100 -8.7 -5.64321 | opp_overlap 2633659 2633669 2633672, overlap 2633672 TAGAATTGTATATTA CAAGGTATAAAGCATAT TCCA GTATGTTTTATACCTTA TTTTTATTTTGTTAT TERM 3494 2633703 - 2633672 - R 70 -7.5 -3.47345 | opp_overlap 2633669 2633672, overlap 2633669 AATTGTATATTACAA GGTATAAAGCATA TTCCAG TATGTTTTATACC TTATTTTTATTTTGT TERM 3495 2633672 - 2633703 + r 100 -10.4 -4.82111 | opp_overlap 2633672 2633669, overlap 2633669 AATTGTATATTACAA GGTATAAAGCATAT TCCA GTATGTTTTATACC TTATTTTTATTTTGT TERM 3496 2633763 - 2633794 + r 85 -10.6 -3.03771 | opp_overlap 2633754 2633761 2633760, overlap 2633767 ATATTATATCAATTT TTAATAAAAAATAA ACAA TTATTTTTTATTAA TATTCACCCCTATGA CLH_2463 2634708 - 2633908 - | hypothetical protein CLH_2464 2635720 - 2634725 - | hypothetical protein CLH_2465 2636219 - 2635704 - | RNA polymerase sigma factor, sigma-70 family CLH_2466 2636488 - 2636372 - | hypothetical protein TERM 3497 2636449 - 2636433 - G 83 -8.7 -4.35682 | opp_overlap 2636432, overlap 2636430 CTAGAAGCAAAATAA GAAGGAG TAC CTCCTCC ATCATCTGGGCTTGG CLH_2467 2637661 - 2636534 - | oxidoreductase, FAD/FMN-binding CLH_2468 2637851 - 2638189 + | transcriptional regulator, HxlR family TERM 3498 2638382 - 2638348 - T 100 -10.2 -5.29445 | TTTCAACAATAAAAA TAGTCTTAGGCAAT TTATATT AATGCCTAAGACTA CAAATCTCATTTGTT CLH_2469 2639084 - 2638461 - | chloramphenicol O-acetyltransferase TERM 3499 2638673 - 2638690 + g 70 -8.5 -2.5032 | overlap 2638672 2638671 ATGGAAGCATTGATA CCGAAAA GCTA TTTTCGG GTATATTGGGTTTTG TERM 3500 2639236 - 2639202 - R 91 -7.3 -5.55769 | opp_overlap 2639235 TTTTAGAATAAAAAA TAGCCTTAATCATAT TATAT AAATGGTTAAGGCTA TAAACTTCACTTATT TERM 3501 2639235 - 2639292 + r 100 -12.3 -4.41302 | opp_overlap 2639202 2639241, overlap 2639241 ATAAATGGTTAAGGC TATAAACTTCACTTATTTATGATACGG CTCT CCGTATCAGTTGTAAGTGAAGTTTTTA TTTATTCATTTACTA TERM 3502 2639241 - 2639286 + r 100 -11.3 -5.48514 | opp_overlap 2639241, overlap 2639235 GGTTAAGGCTATAAA CTTCACTTATTTATGATACGG CTCT CCGTATCAGTTGTAAGTGAAG TTTTTATTTATTCAT TERM 3503 2639286 - 2639241 - R 81 -9.1 -3.92522 | opp_overlap 2639241 2639235 GGTTAAGGCTATAAA CTTCACTTATTTATGATACGG CTCT CCGTATCAGTTGTAAGTGAAG TTTTTATTTATTCAT CLH_2470 2641292 - 2639385 - | putative orphan protein CLH_2471 2642336 - 2641551 - | hypothetical protein TERM 3504 2642521 - 2642487 - R 77 -5.2 -5.28176 | TCCACGTATAAAAAA TAACCTTAACCA AGTAACATCAA TGGTTAAGGCTA CAAACCTCACTTATT TERM 3505 2642571 - 2642526 - R 95 -10.5 -3.92522 | opp_overlap 2642526 2642563 GGTTAAGGCTACAAA CCTCACTTATTTATGATACGG TTCT CCGTATCGGTACTAAGTGAGG TTTTTTCATTATTAA TERM 3506 2642526 - 2642571 + r 100 -12.7 -5.37865 | opp_overlap 2642526, overlap 2642563 GGTTAAGGCTACAAA CCTCACTTATTTATGATACGG TTCT CCGTATCGGTACTAAGTGAGG TTTTTTCATTATTAA CLH_2472 2643167 - 2642583 - | hypothetical protein CLH_2473 2644017 - 2643145 - | hypothetical protein TERM 3507 2644195 - 2644167 - R 81 -8.9 -3.94746 | overlap 2644170 TTACATGCAACTAAA GAAGGAGCACCCA TTA CAGATACTCCTTC CTACTTACTTAGATA CLH_2474 2644411 - 2644196 - | hypothetical protein CLH_2475 2644825 - 2644463 - | cassette chromosome recombinase B CLH_2476 2645770 - 2645054 - | site-specific DNA recombinase TERM 3508 2645808 - 2645830 + r 75 -7.8 -3.86995 | opp_overlap 2645808, overlap 2645824 TAGATAAATATTAAA GTTCCTAAAA ATC TATTAGGAAC TTCTTATCAATTTAA TERM 3509 2645830 - 2645808 - R 77 -7.8 -4.06185 | opp_overlap 2645808 2645824 TAGATAAATATTAAA GTTCCTAAAA ATC TATTAGGAAC TTCTTATCAATTTAA CLH_2477 2646502 - 2646065 - | hypothetical protein CLH_2478 2646727 - 2646518 - | hypothetical protein CLH_2479 2647072 - 2646788 - | hypothetical protein TERM 3510 2647106 - 2647124 + r 82 -10.4 -2.88386 | opp_overlap 2647105, overlap 2647105 TGATATTCTTAATAT TCTTGTGA TCT TCACAAGA CTTATTATAAAATCT TERM 3511 2647189 - 2647211 + r 95 -12 -3.66803 | opp_overlap 2647189 TTTATAAGTAAATAA GGAGGAAGCC TAA GACTTCCTCC TTTACAATATTAAAA TERM 3512 2647211 - 2647189 - R 100 -14.2 -4.12296 | opp_overlap 2647189 TTTATAAGTAAATAA GGAGGAAGCC TAA GACTTCCTCC TTTACAATATTAAAA TERM 3513 2647327 - 2647348 + r 70 -7.5 -3.35183 | opp_overlap 2647327 2647326 ATATTAATATTAAAT TTAGTAAAT TTTC ATTTACTAA TTAGCTTCTTTACTT CLH_2480 2647889 - 2647338 - | hypothetical protein TERM 3514 2647961 - 2648001 + r 100 -10.2 -4.76892 | opp_overlap 2647961 ATTGATTAAAAAAAA TAAGAAATATTACTAT TTTTTTATT ATAGTAATATTTCTTA TTTTTCAATTAATAT TERM 3515 2648001 - 2647961 - R 100 -10.2 -5.86965 | opp_overlap 2647961 ATTGATTAAAAAAAA TAAGAAATATTACTAT TTTTTTATT ATAGTAATATTTCTTA TTTTTCAATTAATAT CLH_2481 2648382 - 2648233 - | hypothetical protein CLH_2482 2648692 - 2648384 - | hypothetical protein TERM 3516 2648833 - 2648791 - R 88 -12.3 -2.71712 | opp_overlap 2648796 2648799, overlap 2648796 TTTTTCTCCTTAAAT CAAAAGAAGCCATATCTTA TTAAC TAAGACATAGCTTCTTTAG CAATCAATTTCCGAA TERM 3517 2648828 - 2648796 - R 100 -10.8 -4.54727 | opp_overlap 2648796 2648799, overlap 2648791 CTCCTTAAATCAAAA GAAGCCATATCTTA TTAAC TAAGACATAGCTTC TTTAGCAATCAATTT CLH_2483 2649450 - 2648830 - | hypothetical protein CLH_2484 2649760 - 2649467 - | hypothetical protein CLH_2485 2650110 - 2649772 - | hypothetical protein TERM 3518 2649874 - 2649844 - G 100 -9.9 -5.04601 | opp_overlap 2649843 2649846 GCTAGAAATCAAAAA TAGTGAAGAAGTC CAATT AACTCCTTCACTA CATTTAATTATGTCT TERM 3519 2650140 - 2650174 + r 100 -16 -4.28432 | opp_overlap 2650140 TCTTAAAATAAAAAA GAACTCTTACCTGTAA TCA TTACAAGTAAGAGTTC TTTTAAATTAAACTT TERM 3520 2650174 - 2650140 - R 100 -18.2 -5.79595 | opp_overlap 2650140 TCTTAAAATAAAAAA GAACTCTTACCTGTAA TCA TTACAAGTAAGAGTTC TTTTAAATTAAACTT CLH_2486 2650485 - 2650177 - | hypothetical protein dcm 2651469 - 2650555 - | DNA-cytosine methyltransferase TERM 3521 2650754 - 2650770 + g 73 -3 -5.47431 | TCTTCAAGACTACTA CATCTA TCACC TGGATG TTTTTTATATGTTGG TERM 3522 2650965 - 2650953 - G 70 -6.3 -4.09685 | opp_overlap 2650952 2650953 TGTTACTTTCTAAAA GCTTT TCT AAAGC ATTATCTTTTCCTTT CLH_2488 2652540 - 2651491 - | type II restriction enzyme HgiDI TERM 3523 2652615 - 2652659 + r 100 -14.7 -3.37901 | opp_overlap 2652621, overlap 2652617 2652621 TTCAATGTATTCTAT CATAAATTTAAGCTATACACC CTT GATGTATAGCTTAAATTTATA TTAATTACAATATTT TERM 3524 2652617 - 2652657 + r 100 -17.3 -3.25093 | opp_overlap 2652621, overlap 2652615 2652621 CAATGTATTCTATCA TAAATTTAAGCTATACACC CTT GATGTATAGCTTAAATTTA TATTAATTACAATAT TERM 3525 2652653 - 2652621 - R 100 -15.9 -3.9712 | opp_overlap 2652617 2652615 2652621 GTATTCTATCATAAA TTTAAGCTATACACC CTT GATGTATAGCTTAAA TTTATATTAATTACA TERM 3526 2652621 - 2652653 + r 100 -13.7 -4.2772 | opp_overlap 2652621, overlap 2652617 2652615 GTATTCTATCATAAA TTTAAGCTATACACC CTT GATGTATAGCTTAAA TTTATATTAATTACA CLH_2489 2653541 - 2652810 - | hypothetical protein TERM 3527 2653581 - 2653628 + r 70 -7.3 -3.75437 | opp_overlap 2653582 2653588, overlap 2653582 GTTTGTGCTGATTAT ATTAAAAGTGTGGAAATAATA TTAAAT TATTATTTCCACACCTTCAAA TTTGATCAAATAATT TERM 3528 2653627 - 2653582 - R 100 -15.2 -2.78384 | opp_overlap 2653581 2653582, overlap 2653588 TTTGTGCTGATTATA TTAAAAGTGTGGAAATAATA TTAAAT TATTATTTCCACACCTTCAA ATTTGATCAAATAAT TERM 3529 2653582 - 2653627 + r 82 -10.8 -2.8478 | opp_overlap 2653582 2653588, overlap 2653581 TTTGTGCTGATTATA TTAAAAGTGTGGAAATAATA TTAAAT TATTATTTCCACACCTTCAA ATTTGATCAAATAAT TERM 3530 2653621 - 2653588 - R 100 -14.2 -4.371 | opp_overlap 2653582 2653581, overlap 2653582 CTGATTATATTAAAA GTGTGGAAATAATA TTAAAT TATTATTTCCACAC CTTCAAATTTGATCA CLH_2490 2654572 - 2653679 - | hypothetical protein CLH_2491 2655256 - 2654846 - | putative peptide deformylase CLH_2492 2655619 - 2655260 - | hypothetical protein CLH_2493 2655992 - 2655603 - | hypothetical Cytosolic Protein TERM 3531 2655896 - 2655863 - G 73 -8.5 -3.01637 | opp_overlap 2655862 2655863 2655865 2655868, overlap 2655865 2655868 CACCAACAGTATATA TATAATTTTGAATTT TTTT AAATGCAAAATTATA ATCTTTGGGTAATGC TERM 3532 2655863 - 2655896 + g 70 -8.5 -2.65116 | opp_overlap 2655863 2655865 2655868, overlap 2655862 2655865 2655868 CACCAACAGTATATA TATAATTTTGAATTT TTTT AAATGCAAAATTATA ATCTTTGGGTAATGC CLH_2494 2656317 - 2655985 - | transcriptional regulator, PadR family TERM 3533 2656613 - 2656555 - R 100 -7.9 -5.56573 | gap 4, opp_overlap 2656556 2656562 2656565, overlap 2656556 2656565 ATAAATAAAGAAAAA TCCACAGTAA-T--GAACTGCCCCCTATC TATTT GACAGGAGGCAGTTCATAATTACTGTGG- GTTTAGCCTTTTGGT TERM 3534 2656613 - 2656556 - R 100 -13.9 -3.90284 | gap 3, opp_overlap 2656556 2656562 2656565, overlap 2656555 2656565 TAAATAAAGAAAAAT CCACAGTAA-T--GAACTGCCCCCTATC TATTT GACAGGAGGCAGTTCATAATTACTGTGG GTTTAGCCTTTTGGT TERM 3535 2656562 - 2656604 + r 95 -12.1 -3.31196 | opp_overlap 2656555 2656556 2656565, overlap 2656556 2656565 AAGAAAAATCCACAG TAATGAACTGCCCCCTATC TATTT GACAGGAGGCAGTTCATAA TTACTGTGGGTTTAG TERM 3536 2656565 - 2656601 + r 100 -13.8 -2.82291 | opp_overlap 2656555 2656556 2656565, overlap 2656562 2656556 AAAAATCCACAGTAA TGAACTGCCCCCTATC TATTT GACAGGAGGCAGTTCA TAATTACTGTGGGTT TERM 3537 2656601 - 2656565 - R 100 -18.2 -3.3287 | opp_overlap 2656565 2656562 2656556, overlap 2656555 2656556 AAAAATCCACAGTAA TGAACTGCCCCCTATC TATTT GACAGGAGGCAGTTCA TAATTACTGTGGGTT CLH_2495 2657165 - 2656629 - | hypothetical protein TERM 3538 2657369 - 2657343 - R 80 -6 -5.19261 | opp_overlap 2657336 2657343 AAATTCATTAAAAAA GTAGTAAAATCT TAA AAAGTTTACTAC TTATTTATCCTTAAT CLH_2496 2657911 - 2657609 - | hypothetical protein TERM 3539 2657878 - 2657890 + g 72 -3.4 -5.37043 | opp_overlap 2657878 CACATTTTTTTATAA CTTC CTCTT GAAG TTTTTTCTCTAAAGT CLH_2497 2658238 - 2658894 + | putative lipoprotein CLH_2498 2659293 - 2659081 - | hypothetical protein CLH_2499 2660194 - 2659397 - | putative lipoprotein TERM 3540 2660351 - 2660323 - R 100 -7.7 -6.12328 | opp_overlap 2660323 2660350, overlap 2660350 AGAATATAAAAAAAA TATTACTGAAA TTTTTCT TTTCAGTAATA TTTAAAATAAATATG TERM 3541 2660323 - 2660351 + r 72 -7.7 -3.61654 | opp_overlap 2660323 2660350, overlap 2660350 AGAATATAAAAAAAA TATTACTGAAA TTTTTCT TTTCAGTAATA TTTAAAATAAATATG CLH_2500 2660657 - 2660409 - | hypothetical protein TERM 3542 2660506 - 2660519 + g 75 -5.3 -4.97158 | TCTAATAAATTTTTA GCTAT TTCT ATAGC TTTTCTTTCCTCTGC CLH_2501 2661524 - 2660706 - | metallo-beta-lactamase domain protein TERM 3543 2661265 - 2661276 + g 73 -3 -5.48787 | TCTACGTGTCCATGA GTTA ACAC TAAC TTTTTTATATCTTCT TERM 3544 2661396 - 2661410 + g 85 -7.2 -4.86001 | opp_overlap 2661395 2661396 AGTAGTTTTTAAAAC GAAACA GTT TGTTTC TTTTTGTGCAATAAT CLH_2502 2662896 - 2661811 - | beta-lactamase TERM 3545 2662677 - 2662689 + g 70 -7.7 -3.47573 | CTAACTTTAACTTTC CTTGC TGA GCAAG TTGTAATATAGCTAC CLH_2503 2663636 - 2662998 - | acetyltransferase CLH_2504 2664526 - 2663732 - | amidinotransferase family protein CLH_2505 2665956 - 2664700 - | putative phage replisome organizer TERM 3546 2665284 - 2665300 + g 88 -9.5 -4.15654 | CATTACTCTCATTCT CTCTATC TAT GATAGAG TTCTTATTCTTATTC TERM 3547 2666048 - 2666006 - R 85 -8.1 -4.60041 | gap 2, opp_overlap 2666006 2666005 2666003 ATCTATTTTTAAAAA GTGTTGATATATACAGAATCA AAT TGAA-CTG-ATATATCAACAC ATCTTTAAATATTTC CLH_2506 2667126 - 2666314 - | antirepressor, phage associated CLH_2507 2667365 - 2667159 - | hypothetical protein TERM 3548 2667382 - 2667397 + H 81 -7.6 -4.37534 | TCCTCACCCCTTTTT GTGTCT TATT AGACAC TTTTAGTATAAATTT CLH_2508 2667526 - 2668008 + | transcriptional regulator, Cro/CI family CLH_2509 2668207 - 2668689 + | conserved phage protein TERM 3549 2668721 - 2668694 - T 100 -10 -5.25893 | opp_overlap 2668694, overlap 2668718 ATATATACTAAAAAA GCACCTACTCAT TTTC ATAAGTAAGTGC TTTTACACAAAAGTT CLH_2510 2669504 - 2668833 - | cotJC protein CLH_2512 2669702 - 2670019 + | hypothetical protein TERM 3550 2670028 - 2670067 + T 70 -3.2 -5.29716 | gap 1, opp_overlap 2670028 TCAATAATCATGTAA CATTAATTTAGTAAGTTTA TTA TATAAT-ACTAAATTAATG TTTTTCTTCTCTTCA CLH_2511 2670126 - 2670013 - | hypothetical protein TERM 3551 2670410 - 2670445 + r 75 -7.8 -3.83705 | opp_overlap 2670420, overlap 2670411 2670420 CTGCATAAATTTATT GTACAAAAAAGACTCT ATAT AGAGTCTTTTTTTTAA TTTAATAATCCTTTT TERM 3552 2670411 - 2670444 + r 85 -11.3 -2.89138 | opp_overlap 2670420, overlap 2670410 2670420 TGCATAAATTTATTG TACAAAAAAGACTCT ATAT AGAGTCTTTTTTTTA ATTTAATAATCCTTT TERM 3553 2670420 - 2670435 + r 100 -7.6 -6.02546 | opp_overlap 2670420, overlap 2670411 2670410 TTATTGTACAAAAAA GACTCT ATAT AGAGTC TTTTTTTTAATTTAA TERM 3554 2670435 - 2670420 - R 93 -7.6 -5.26316 | opp_overlap 2670420 2670411 2670410 TTATTGTACAAAAAA GACTCT ATAT AGAGTC TTTTTTTTAATTTAA CLH_2513 2671208 - 2670477 - | 1,4-beta-N-acetylmuramidase TERM 3555 2671353 - 2671314 - R 100 -8.8 -5.55664 | CTATTATTAAAAAAA TACCCACATCCACAGATC CTAA AATCTATAAATGTGAGTA TTTATATAAGTATAT TERM 3556 2671442 - 2671483 + r 93 -9 -4.79373 | opp_overlap 2671451 GAATATTTCCGTTGT TATGACCAAGATTATACT GTAACA AGTATTATCTTAGTCATA TTTTCTATTGTATTG CLH_2514 2672510 - 2671488 - | putative lipoprotein TERM 3557 2672684 - 2672730 + r 77 -7.6 -4.16904 | opp_overlap 2672691, overlap 2672680 2672686 TTACTCCAATTCTTC AAGTGAAGTATATTTATTATAG AAT TTATAAAAACTATACTTCACTA TTTCTCTATAATGTT TERM 3558 2672686 - 2672728 + r 90 -10.2 -3.67067 | opp_overlap 2672691, overlap 2672680 2672684 ACTCCAATTCTTCAA GTGAAGTATATTTATTATAG AAT TTATAAAAACTATACTTCAC TATTTCTCTATAATG CLH_2515 2672913 - 2672794 - | hypothetical protein TERM 3559 2672944 - 2672905 - G 100 -8.8 -5.53991 | TATGTACCAAAAAAA TACCCACATCCACAGATC CTAA AATCTATAAATGTGAGTA TTTATATAAGCTAAT TERM 3560 2673271 - 2673305 + r 78 -9.6 -3.02649 | opp_overlap 2673260 2673271 2673277, overlap 2673273 2673277 AAAATATTTCTTAAA TATAAAGACCAAGA TTTAATT TTTTGGTCTTTATA TCTCTGTAATAAAAT CLH_2516 2674587 - 2673541 - | hypothetical protein TERM 3561 2674719 - 2674695 - R 77 -5.1 -5.33866 | opp_overlap 2674695 TAAATTCATAAAAAA CACCTACTT CAAAACC AAGTAAGTG TTCTAAAAAAACTGT CLH_2517 2675390 - 2674836 - | putative restriction endonuclase TERM 3562 2675616 - 2675582 - R 100 -11 -5.1523 | opp_overlap 2675583 2675585 2675590 TGGATAATATAAAAA GCCTAAAATAGAAA TTTTATG TTTCTACTTTAGGC TACAATTCATATATT CLH_2518 2675787 - 2675623 - | hypothetical protein CLH_2519 2676023 - 2675790 - | hypothetical protein CLH_2520 2676510 - 2676001 - | hypothetical protein CLH_2521 2676721 - 2676500 - | hypothetical protein TERM 3563 2676865 - 2676826 - R 100 -8.8 -6.09196 | CCTAAAATAAAAAAA TACCCACATCCACAGATC CTAA AATCTATAAATGTGAGTA TTTATATAAGCTAAT TERM 3564 2676894 - 2676916 + r 72 -7.8 -3.50251 | opp_overlap 2676898, overlap 2676890 2676898 ATTACTTAGCTTTAA CAAATAGCCT TAA AGACTATTTG TTCATTCCTTCTTCA CLH_2522 2677911 - 2676910 - | hypothetical protein TERM 3565 2677842 - 2677871 + g 70 -6.6 -4.04141 | gap 1 CATCTTCTAGAGTTT TCATTCC-GTACT TTTCT AGTACTGGAGTGA TTTGATTAATTCTTC CLH_2523 2678626 - 2677937 - | hypothetical protein TERM 3566 2678960 - 2679015 + r 100 -18.1 -3.35224 | opp_overlap 2678969, overlap 2678969 GCGGCACCATTTATT TAGAAGAAAGGCTGTATTACAAGGT TTAGAT ACTTTGTAATACAGCCTTTTTTGTA TGTTTGCAACAATAT TERM 3567 2679006 - 2678969 - R 100 -14.4 -4.33417 | opp_overlap 2678960 2678969 TTTATTTAGAAGAAA GGCTGTATTACAAGGT TTAGAT ACTTTGTAATACAGCC TTTTTTGTATGTTTG TERM 3568 2678969 - 2679006 + r 100 -16.6 -5.51046 | opp_overlap 2678969, overlap 2678960 TTTATTTAGAAGAAA GGCTGTATTACAAGGT TTAGAT ACTTTGTAATACAGCC TTTTTTGTATGTTTG CLH_2525 2679596 - 2679402 - | hypothetical protein TERM 3569 2679505 - 2679518 + g 85 -3.1 -6.09888 | TTTATTGCAATTCTA GCTGT TTCA ATAGC TTTTTTTTCTTCGCC TERM 3570 2679710 - 2679690 - H 72 -8.3 -3.15427 | opp_overlap 2679687 AAGATTTCTGAGGAA CGTATTTCC TAT GGAAATGCG GGCTATGTTGCTAAG CLH_2526 2679700 - 2679909 + | hypothetical protein TERM 3571 2680862 - 2680810 - g 72 -7.4 -3.93963 | opp_overlap 2680820, overlap 2680811 ATTACTATTTAGAAA GTTTATATAATGAAGAATGTGA TGACTAATT CCACATTCTTCATTATAAAAAA TAAACATCTTAATTT TERM 3572 2680861 - 2680811 - g 88 -10.9 -2.95896 | opp_overlap 2680820, overlap 2680810 TTACTATTTAGAAAG TTTATATAATGAAGAATGTGA TGACTAATT CCACATTCTTCATTATAAAAA ATAAACATCTTAATT CLH_2527 2680068 - 2680838 + | hypothetical protein CLH_2528 2681455 - 2680871 - | putative lipoprotein CLH_2529 2681757 - 2681506 - | hypothetical protein CLH_2530 2682087 - 2682314 + | hypothetical protein CLH_2531 2682414 - 2682632 + | hypothetical protein TERM 3573 2682690 - 2682660 - T 100 -14.2 -4.88405 | opp_overlap 2682660 AATTTTTAAACAAAA TATCTAAGGTGCTA TTT TAGCCCCTTAGATA TTTAAGCTCATAACT TERM 3574 2682660 - 2682690 + T 100 -14.2 -3.62275 | opp_overlap 2682660 AATTTTTAAACAAAA TATCTAAGGTGCTA TTT TAGCCCCTTAGATA TTTAAGCTCATAACT CLH_2532 2683361 - 2682876 - | putative lipoprotein CLH_2533 2684019 - 2683348 - | hypothetical protein TERM 3575 2684322 - 2684379 + r 70 -5.2 -4.78661 | opp_overlap 2684325 2684330, overlap 2684325 2684330 ATTTAAATTAATATA AAATAAAAGACTGTAATAAGATTTAT TTTTAT ACAAATCTCATTACAGTCTTTTGATA TTTTAATTTTTAACT TERM 3576 2684325 - 2684376 + r 87 -11.3 -2.98005 | opp_overlap 2684325 2684330, overlap 2684322 2684330 TAAATTAATATAAAA TAAAAGACTGTAATAAGATTTAT TTTTAT ACAAATCTCATTACAGTCTTTTG ATATTTTAATTTTTA TERM 3577 2684376 - 2684325 - R 100 -13.5 -4.76274 | opp_overlap 2684322 2684325 2684330, overlap 2684330 TAAATTAATATAAAA TAAAAGACTGTAATAAGATTTAT TTTTAT ACAAATCTCATTACAGTCTTTTG ATATTTTAATTTTTA TERM 3578 2684330 - 2684371 + r 89 -9 -4.56729 | opp_overlap 2684325 2684330, overlap 2684325 2684322 TAATATAAAATAAAA GACTGTAATAAGATTTAT TTTTAT ACAAATCTCATTACAGTC TTTTGATATTTTAAT TERM 3579 2684371 - 2684330 - R 100 -13.4 -5.26907 | opp_overlap 2684330 2684325 2684322, overlap 2684325 TAATATAAAATAAAA GACTGTAATAAGATTTAT TTTTAT ACAAATCTCATTACAGTC TTTTGATATTTTAAT CLH_2534 2685927 - 2684419 - | ATP-dependent Zn protease TERM 3580 2686421 - 2686448 + r 73 -7.2 -4.15044 | opp_overlap 2686426, overlap 2686426 2686443 TTTCACCTATTAAGT TAAGAGAAAAGG TTCA TCTTTTCTTTTA TTTGTTCCCAAGAAA TERM 3581 2686426 - 2686443 + r 74 -4.9 -5.09762 | opp_overlap 2686426, overlap 2686421 CCTATTAAGTTAAGA GAAAAGG TTCA TCTTTTC TTTTATTTGTTCCCA CLH_2535 2686929 - 2686420 - | phosphoesterase TERM 3582 2687145 - 2687098 - R 77 -7.4 -4.48743 | gap 1, opp_overlap 2687101 2687104, overlap 2687104 2687109 AAAACTGCAAATAAA CTTAAATTAAATCACCTAAGATT CAA AATCTCAGGTGATTTAATT-ATT TTTCTTTAGTTTCAC TERM 3583 2687101 - 2687143 + r 100 -13.8 -5.41941 | opp_overlap 2687098 2687104 2687109, overlap 2687104 ACTGCAAATAAACTT AAATTAAATCACCTAAGATT CAA AATCTCAGGTGATTTAATTA TTTTTCTTTAGTTTC TERM 3584 2687140 - 2687104 - R 100 -17.7 -3.96542 | opp_overlap 2687101 2687104, overlap 2687098 2687109 GCAAATAAACTTAAA TTAAATCACCTAAGATT CAA AATCTCAGGTGATTTAA TTATTTTTCTTTAGT TERM 3585 2687104 - 2687140 + r 100 -15.5 -4.74052 | opp_overlap 2687104 2687098 2687109, overlap 2687101 GCAAATAAACTTAAA TTAAATCACCTAAGATT CAA AATCTCAGGTGATTTAA TTATTTTTCTTTAGT TERM 3586 2687135 - 2687109 - R 100 -13.2 -4.12279 | opp_overlap 2687104 2687101, overlap 2687104 2687098 TAAACTTAAATTAAA TCACCTAAGATT CAA AATCTCAGGTGA TTTAATTATTTTTCT CLH_2536 2688442 - 2687141 - | cytochrome C biogenesis protein transmembrane region family TERM 3587 2688386 - 2688363 - G 76 -8.2 -3.71156 | AAAGGTAATACACAA GGGGATAG AAATGAAA CTATCCCC TCAAAAAATACTAAT trx 2688761 - 2688444 - | thioredoxin TERM 3588 2689291 - 2689274 - g 85 -7.1 -4.85918 | TATCAGATAATAAAA CAGATAA TAGT TTATCTG AAAAAAATGTATTAG CLH_2538 2689057 - 2690865 + | tetanolysin O TERM 3589 2691040 - 2690995 - T 95 -9.3 -4.77986 | opp_overlap 2690998, overlap 2690998 TTAAACACTCAAAAA TAAGGTTAAAATAAACTTAAC TTAC GTATAGTTTATTTTAACCTTT TATTTTAATTATATT TERM 3590 2691037 - 2690998 - T 100 -11 -4.47118 | opp_overlap 2690998, overlap 2690995 AACACTCAAAAATAA GGTTAAAATAAACTTAAC TTAC GTATAGTTTATTTTAACC TTTTATTTTAATTAT TERM 3591 2690998 - 2691037 + T 100 -11 -5.19998 | opp_overlap 2690998 2690995 AACACTCAAAAATAA GGTTAAAATAAACTTAAC TTAC GTATAGTTTATTTTAACC TTTTATTTTAATTAT CLH_2539 2691713 - 2691057 - | 4Fe-4S ferredoxin, iron-sulfur binding CLH_2540 2692489 - 2691887 - | hypothetical protein CLH_2541 2692926 - 2692507 - | hypothetical protein CLH_2542 2693045 - 2692929 - | hypothetical protein CLH_2543 2693713 - 2693063 - | hypothetical protein CLH_2544 2694347 - 2693784 - | hypothetical protein CLH_2545 2695065 - 2694484 - | hypothetical protein TERM 3592 2694793 - 2694779 - G 86 -6.4 -5.30155 | TCATCAACCAAAAAA TCCATG AAA CACGGA CAATTAATTAATAGC CLH_2546 2695766 - 2695062 - | hypothetical protein TERM 3593 2695872 - 2695914 + r 100 -16.7 -4.87786 | opp_overlap 2695872 CTAAAGAATAAAAAA TATAACCTGTGATACTAAA TATGT TTTTGTATCACAGGTTATA TTTTTGTAAACTTAA TERM 3594 2695914 - 2695872 - R 100 -16.7 -5.72254 | opp_overlap 2695872 CTAAAGAATAAAAAA TATAACCTGTGATACTAAA TATGT TTTTGTATCACAGGTTATA TTTTTGTAAACTTAA CLH_2547 2697199 - 2696180 - | hypothetical protein TERM 3595 2697343 - 2697368 + r 74 -4.7 -5.18561 | opp_overlap 2697346, overlap 2697344 2697346 ATATTGATTTATGAT AAAGGAGGAAT ATAC ATTCCTCCTCG TTTTTTAACTATTTG TERM 3596 2697344 - 2697367 + r 76 -8.2 -3.6951 | opp_overlap 2697346, overlap 2697343 2697346 TATTGATTTATGATA AAGGAGGAAT ATAC ATTCCTCCTC GTTTTTTAACTATTT TERM 3597 2697365 - 2697346 - R 95 -10.8 -3.97947 | opp_overlap 2697346 2697344 2697343 TTGATTTATGATAAA GGAGGAAT ATAC ATTCCTCC TCGTTTTTTAACTAT TERM 3598 2697346 - 2697365 + r 90 -10.8 -3.40444 | opp_overlap 2697346, overlap 2697344 2697343 TTGATTTATGATAAA GGAGGAAT ATAC ATTCCTCC TCGTTTTTTAACTAT CLH_2548 2697541 - 2697377 - | Spo0E like sporulation regulatory protein TERM 3599 2697618 - 2697642 + r 71 -5.8 -4.62051 | opp_overlap 2697588 2697618, overlap 2697613 TCTTTAAAATAAAAA GAACCCTATT AAATC AATAGAGTTC TTTTATATAGTCTTT TERM 3600 2697642 - 2697618 - R 100 -8.7 -5.45802 | opp_overlap 2697618 2697613, overlap 2697588 TCTTTAAAATAAAAA GAACCCTATTA AAT CAATAGAGTTC TTTTATATAGTCTTT CLH_2549 2698469 - 2697660 - | hypothetical protein CLH_2550 2699117 - 2698614 - | acetyltransferase, gnat family TERM 3601 2699181 - 2699138 - R 75 -7.8 -3.85698 | opp_overlap 2699138 2699144, overlap 2699144 CCCCTCTTTCATAAA TAAAAATACATTTAAGTCAC TTTA ATTACTTAAATGTATTTTAA CTTTCAATTATAAAA TERM 3602 2699144 - 2699175 + r 70 -6.1 -4.37198 | opp_overlap 2699138 2699144, overlap 2699138 TTTCATAAATAAAAA TACATTTAAGTCA CTTTAA TTACTTAAATGTA TTTTAACTTTCAATT TERM 3603 2699175 - 2699144 - R 87 -6.8 -5.38054 | opp_overlap 2699144 2699138, overlap 2699138 TTTCATAAATAAAAA TACATTTAAGTCAC TTTA ATTACTTAAATGTA TTTTAACTTTCAATT CLH_2551 2699448 - 2699221 - | hypothetical protein TERM 3604 2699806 - 2699764 - H 100 -13.9 -3.57651 | opp_overlap 2699759 2699772 2699773 2699775, overlap 2699772 TTCTACACCATATAA CCTAACAACTATATAGATT AATAA AATCTATATAATTATTAGG TAAAATATGTAATAC CLH_2552 2699935 - 2700411 + | hypothetical protein TERM 3605 2700437 - 2700465 + T 100 -10.5 -5.41941 | opp_overlap 2700437 ATTTGTATAAAAAAA TAGTAGCTTCTAA CTA TTAGAAACTACTA TTTTTATTTAATTTA TERM 3606 2700465 - 2700437 - T 100 -12.7 -5.61596 | opp_overlap 2700437 ATTTGTATAAAAAAA TAGTAGCTTCTAA CTA TTAGAAACTACTA TTTTTATTTAATTTA CLH_2553 2701427 - 2700513 - | membrane protein TERM 3607 2701044 - 2701060 + g 74 -2.4 -5.65496 | opp_overlap 2701044 AGTTCCAACAAATAA TATTAT AATAG ATAATA TTTTTATTTTTGATG TERM 3608 2701775 - 2701728 - R 95 -5.8 -6.01369 | opp_overlap 2701772, overlap 2701772 TAAACAATAAAAAAA GCCCTATATTCTCCCGTTTT GAAACCAA AAAACTGAAAAATATATGGC CATTAGGCAATTATT CLH_2554 2702661 - 2702131 - | hypothetical protein lepB 2703014 - 2703553 + | signal peptidase I TERM 3609 2703688 - 2703657 - T 100 -11.8 -5.5604 | opp_overlap 2703657 TGAACTAATAAAAAA CTAGGTAGAATCTT ATTA AAGATTTTACCTAG TTTTTTTGATTTAAT TERM 3610 2703657 - 2703688 + T 100 -14 -5.73563 | opp_overlap 2703657 TGAACTAATAAAAAA CTAGGTAGAATCTT ATTA AAGATTTTACCTAG TTTTTTTGATTTAAT CLH_2556 2705510 - 2703774 - | myosin-cross-reactive antigen family protein TERM 3611 2705808 - 2705771 - R 100 -13.2 -5.86976 | opp_overlap 2705769 2705768 TGAGAAAACAAAAAA TTTAAGCTATAAAAAT TTAAGT ATTTTTATAGCTTAAA CAATCTTTAACTTTA CLH_2557 2706056 - 2705838 - | dead/H CLH_2558 2706278 - 2707309 + | hypothetical protein TERM 3612 2707328 - 2707311 - T 84 -9.1 -4.21141 | opp_overlap 2707311 GTGTAATAAATTAAA GGTGGCC AATA AGCCACC TTTTTTAGTTAAGAA TERM 3613 2707311 - 2707328 + T 95 -8.4 -5.26875 | opp_overlap 2707311 GTGTAATAAATTAAA GGTGGC CAATAA GCCACC TTTTTTAGTTAAGAA TERM 3614 2707411 - 2707423 + T 77 -3.4 -5.65927 | opp_overlap 2707411 AATATAATTTCAAAA TTCC AATAA GGAA TTTTTTCTTTAACTC CLH_2559 2708742 - 2707471 - | ABC-type transport system, involved in lipoprotein release, permease component CLH_2560 2709470 - 2708733 - | macrolide export ATP-binding/permease protein MacB 2 CLH_2561 2710908 - 2709460 - | putative HylD family protein CLH_2562 2712048 - 2710927 - | putative viral A-type inclusion protein TERM 3615 2712321 - 2712294 - R 100 -12.9 -5.32944 | opp_overlap 2712294 TTTAGAATTAAAAAA GGTGATTTCTG CTTATT CAGAAATCACC TTTGTATTCTAATAT TERM 3616 2712294 - 2712321 + r 100 -12.9 -4.29907 | opp_overlap 2712294 TTTAGAATTAAAAAA GGTGATTTCTG CTTATT CAGAAATCACC TTTGTATTCTAATAT CLH_2563 2712916 - 2712401 - | BioY protein TERM 3617 2713302 - 2713273 - R 100 -8.1 -5.69068 | gap 1, opp_overlap 2713273 TAAAAATATAAAAAA TAGGCATATGGATA AAT TA-CCATATACCTA TTTTCTCGTAAATAA TERM 3618 2713273 - 2713302 + r 72 -5.9 -4.4767 | gap 1, opp_overlap 2713273 TAAAAATATAAAAAA TAGGCATATGGATA AAT TA-CCATATACCTA TTTTCTCGTAAATAA CLH_2564 2713931 - 2713389 - | rubredoxin/rubrerythrin TERM 3619 2713552 - 2713563 + g 73 -3 -5.4433 | TGTTCTGCATCTACT CTTA ATTG TAAG TTTTTCTTTGTATCT TERM 3620 2714195 - 2714161 - R 72 -6 -4.39002 | opp_overlap 2714164, overlap 2714164 2714176 AAACTCTGTACAAAA TAATAAGTATAAAAAT ATA AATTTTATACTTATTT TTAACTTCATATCAA TERM 3621 2714164 - 2714192 + r 86 -7.7 -4.76892 | opp_overlap 2714161 2714164 2714176 CTCTGTACAAAATAA TAAGTATAAAAAT ATA AATTTTATACTTA TTTTTAACTTCATAT TERM 3622 2714192 - 2714164 - R 78 -7.7 -4.30995 | opp_overlap 2714164, overlap 2714161 2714176 CTCTGTACAAAATAA TAAGTATAAAAAT ATA AATTTTATACTTA TTTTTAACTTCATAT TERM 3623 2714399 - 2714359 - R 77 -5.1 -5.33921 | gap 1, opp_overlap 2714362 2714364 2714366 2714394, overlap 2714362 AAATCAATGAAAAAA TA-AGATAGATACTATAA AATTAA TTCTAGTATCTATCTATA ATAGAGTTTTGGGTT TERM 3624 2714395 - 2714362 - R 85 -8.4 -4.72473 | opp_overlap 2714362 2714364 2714366 2714394, overlap 2714359 TCAATGAAAAAATAA GATAGATACTATAA AATTAA TTCTAGTATCTATC TATAATAGAGTTTTG CLH_2565 2714992 - 2714450 - | rubredoxin/rubrerythrin TERM 3625 2714613 - 2714624 + g 73 -3 -5.4433 | TGTTCTGCATCTACT CTTA ATTG TAAG TTTTTCTTTGTATCT TERM 3626 2715619 - 2715636 + G 75 -8.5 -3.34522 | TTATGATATGACCTT TCTAGCA ATAT TGCTAGA TTCGTTAAACGATAT TERM 3627 2715935 - 2715925 - g 74 -2.6 -5.67063 | CTCATTAGAAAAAAA TAAA AAT TTTA CTTCAATAGATGAAA CLH_2566 2715473 - 2716366 + | hypothetical protein TERM 3628 2716480 - 2716505 + T 71 -8.5 -3.11634 | TATTTTAAATCTGAA CCTTGTATTTA TATT TAAATATAAGG TTGGCTCATATCACA CLH_2567 2718645 - 2716621 - | methyl-accepting chemotaxis protein TERM 3629 2716980 - 2716993 + g 74 -2.5 -5.64304 | overlap 2716987 CTACAATTACATTAG TATTT TGTA AAATA TTTTTTATTATATTA TERM 3630 2718061 - 2718071 + g 71 -4 -5.16038 | TGCTTCTCCACTTTT TAGA AGT TCTA TTTTATTTGTTATAT TERM 3631 2718319 - 2718330 + g 70 -3 -5.30448 | TGCATAAGCTATACC CATA TTAT TATG TTTTTGTATTTCTTT TERM 3632 2719099 - 2719080 - R 71 -8.6 -3.09492 | TCCTTAACTTTAATA GGGATGTC CAAA AACATCCC TACACACTAAAATAT CLH_2568 2719236 - 2719114 - | hypothetical protein CLH_2569 2720248 - 2719229 - | pyruvate kinase, barrel domain CLH_2570 2720585 - 2721070 + | putative lipoprotein TERM 3633 2721216 - 2721244 + F 100 -8.9 -5.07567 | TTTACTACTTTAAGT TTCTAAGGGGG CGTTTTA CCCCCTTTGAA TTTTTTCAAATATCC CLH_2571 2721397 - 2722230 + | PHP domain protein TERM 3634 2722259 - 2722299 + T 100 -14.9 -3.27298 | opp_overlap 2722259, overlap 2722263 AATAAAAACAAAAAA GGAACTGCTCATATTGCAT TTT AAGCATTATGAGTAGTTCC TTAATAATTAAACCA TERM 3635 2722299 - 2722259 - T 100 -12.7 -6.01725 | opp_overlap 2722259 2722263 AATAAAAACAAAAAA GGAACTGCTCATATTGCAT TTT AAGCATTATGAGTAGTTCC TTAATAATTAAACCA TERM 3636 2722263 - 2722295 + T 74 -8.5 -3.43151 | opp_overlap 2722259, overlap 2722259 AAAACAAAAAAGGAA CTGCTCATATTGCAT TTT AAGCATTATGAGTAG TTCCTTAATAATTAA CLH_2572 2722640 - 2722389 - | hypothetical protein TERM 3637 2722898 - 2722887 - R 71 -5.8 -4.72272 | opp_overlap 2722887 TGCTTCTATTAAAAA GGCT CTGT AGCC TCTCATAGTTTCATA CLH_2573 2724260 - 2722869 - | probable M18-family aminopeptidase 1 hprK 2725351 - 2724437 - | HPr(Ser) kinase/phosphatase CLH_2575 2725556 - 2725368 - | hypothetical protein CLH_2576 2725989 - 2726204 + | hypothetical protein TERM 3638 2726733 - 2726749 + T 75 -6.5 -4.45544 | opp_overlap 2726733 CTGAACAATAAAAAA CACCCCA TAA TGAGGTG TTTTAATTCATAAAC TERM 3639 2726749 - 2726733 - T 100 -8.7 -5.64873 | opp_overlap 2726733 CTGAACAATAAAAAA CACCCCA TAA TGAGGTG TTTTAATTCATAAAC TERM 3640 2726798 - 2726820 + T 85 -9.8 -3.19246 | overlap 2726802 GTTTACTTACATATT CATACCTGCG CCT CGCAGGTGGG TTAAGTTCAACTTAA TERM 3641 2726802 - 2726816 + T 82 -11.4 -2.57013 | overlap 2726798 ACTTACATATTCATA CCTGCG CCT CGCAGG TGGGTTAAGTTCAAC TERM 3642 2726821 - 2726835 + T 73 -5.8 -4.82162 | CGCCTCGCAGGTGGG TTAAGT TCA ACTTAA TTTTGTCTTCTTCTG CLH_2577 2727415 - 2727017 - | hypothetical protein CLH_2578 2727680 - 2727429 - | hypothetical protein TERM 3643 2727580 - 2727542 - G 73 -5.4 -4.81249 | opp_overlap 2727548 2727550 CTCTAAATGCAAAAA TATTAGCATCATCTGATG ATT CATCAACTGGTGATAATA ATAAATATTCTGTTT TERM 3644 2727706 - 2727753 + r 100 -11.7 -5.1166 | opp_overlap 2727708 2727716 2727719, overlap 2727699 2727707 2727708 TCTTAATTTTTTATG AAGCATATAATAATATCAACT TCTAAT AGTTGATATTATTATATGCAC TTTTTACTTTTAATG TERM 3645 2727707 - 2727752 + r 100 -15.2 -3.65369 | opp_overlap 2727708 2727716 2727719, overlap 2727699 2727706 2727708 CTTAATTTTTTATGA AGCATATAATAATATCAACT TCTAAT AGTTGATATTATTATATGCA CTTTTTACTTTTAAT TERM 3646 2727751 - 2727708 - R 100 -18.7 -3.15579 | opp_overlap 2727699 2727707 2727706 2727708, overlap 2727716 2727719 TTAATTTTTTATGAA GCATATAATAATATCAACT TCTAAT AGTTGATATTATTATATGC ACTTTTTACTTTTAA TERM 3647 2727708 - 2727751 + r 100 -18.7 -2.77595 | opp_overlap 2727708 2727716 2727719, overlap 2727699 2727707 2727706 TTAATTTTTTATGAA GCATATAATAATATCAACT TCTAAT AGTTGATATTATTATATGC ACTTTTTACTTTTAA TERM 3648 2727743 - 2727716 - R 79 -8.7 -3.61404 | opp_overlap 2727708 2727707 2727706, overlap 2727708 2727719 TTATGAAGCATATAA TAATATCAACT TCTAAT AGTTGATATTA TTATATGCACTTTTT CLH_2579 2730065 - 2727780 - | ATP-dependent DNA helicase, UvrD/REP family TERM 3649 2730557 - 2730517 - R 93 -10 -3.94823 | gap 1, opp_overlap 2730530 TATAAAGCAGAATAA GGACT-TCTCATATTGTAT TTTT ATACATTATGAGACAGCCC CCACTAATTCCTTGT CLH_2580 2731124 - 2730579 - | hypothetical protein TERM 3650 2731602 - 2731545 - R 95 -11.9 -3.35224 | opp_overlap 2731553, overlap 2731527 2731553 ATACTTTCCTAAATA TAAAAAAAGTTTTATCAAATTTAGAAA TATC TCTCCAAATTTAATAAAACTTATCTTA AAACTAATTATCCTA TERM 3651 2731594 - 2731553 - R 100 -11.3 -5.88197 | opp_overlap 2731553, overlap 2731545 CTAAATATAAAAAAA GTTTTATCAAATTTAGAAA TATC TCTCCAAATTTAATAAAAC TTATCTTAAAACTAA CLH_2581 2734021 - 2731610 - | 5-methyltetrahydrofolate--homocysteine methyltransferase CLH_2582 2734697 - 2734011 - | vitamin B12 dependent methionine synthase, activation domain protein TERM 3652 2734639 - 2734682 + g 90 -8.5 -4.66938 | gap 1, opp_overlap 2734648, overlap 2734648 AATTTTTGCTTTTTA TAACCTAAA-TACCTAAGGA CTTCA TCCTTAGGTATTTTAAGTTG TTTTGTATTACACAT TERM 3653 2734648 - 2734672 + g 95 -11.6 -4.41817 | opp_overlap 2734648, overlap 2734639 TTTTTATAACCTAAA TACCTAAGGA CTTCA TCCTTAGGTA TTTTAAGTTGTTTTG TERM 3654 2734672 - 2734648 - G 95 -12.3 -3.80625 | opp_overlap 2734648 2734639 TTTTTATAACCTAAA TACCTAAGGAC TTC ATCCTTAGGTA TTTTAAGTTGTTTTG luxS 2735154 - 2734699 - | S-ribosylhomocysteinase LuxS metF 2736074 - 2735196 - | 5,10-methylenetetrahydrofolate reductase TERM 3655 2736129 - 2736105 - R 100 -13 -6.02914 | TTTAGATAAAAAAAA TGCCTAAAGG GTATT CCTTTAGGCA TAATAAACTTCTACA TERM 3656 2736368 - 2736330 - R 100 -15.8 -3.8579 | AGCCAATAATCTAAA TATACTTTTACTCATTAA ATT TTAATAAGTAAAAGTATA ACAGAAATTGCACTA tagO 2737294 - 2736344 - | UDP-GlcNAc:undecaprenyl-P GlcNAc 1-P transferase TERM 3657 2736929 - 2736914 - G 73 -7.6 -3.73968 | opp_overlap 2736907 AAATTCTCCAGTAAA GGGATT AGTA AATCCC ATAAATGCTATTCCT TERM 3658 2737468 - 2737444 - R 72 -5.9 -4.39998 | opp_overlap 2737444 2737448 2737450, overlap 2737450 CATTTAGATAAGAAA TAAAAATTAAG AAT CTTAATATTTA TTAATAAGATACCTA TERM 3659 2737462 - 2737450 - R 79 -4.9 -5.50774 | opp_overlap 2737448 2737444 2737450, overlap 2737444 GATAAGAAATAAAAA TTAAG AAT CTTAA TATTTATTAATAAGA TERM 3660 2737604 - 2737630 + r 86 -9.6 -3.95153 | opp_overlap 2737595 2737604, overlap 2737595 TTAAAAGATAAAAAA GCAGAAACAT TTTTATC ATGTTTCTGC TTTATAAATAATTAA TERM 3661 2737630 - 2737604 - R 100 -9.6 -5.63645 | opp_overlap 2737595 2737604, overlap 2737595 TTAAAAGATAAAAAA GCAGAAACAT TTTTATC ATGTTTCTGC TTTATAAATAATTAA CLH_2586 2739400 - 2737652 - | nucleotidase TERM 3662 2739717 - 2739744 + r 87 -11.4 -3.1162 | opp_overlap 2739722, overlap 2739722 TTTTTACATAAAGAA AAAAAGGAACGC TTAC GCGTTCCTTTTA TATTAACCTCTTTGT TERM 3663 2739722 - 2739739 + r 100 -11.3 -4.67608 | opp_overlap 2739722, overlap 2739717 ACATAAAGAAAAAAA GGAACGC TTAC GCGTTCC TTTTATATTAACCTC TERM 3664 2739739 - 2739722 - R 100 -11.3 -6.04953 | opp_overlap 2739722 2739717 ACATAAAGAAAAAAA GGAACGC TTAC GCGTTCC TTTTATATTAACCTC CLH_2587 2740388 - 2739747 - | V-type ATPase, D subunit CLH_2588 2741771 - 2740392 - | V-type ATPase, B subunit CLH_2589 2743542 - 2741764 - | V-type ATPase, A subunit TERM 3665 2742374 - 2742354 - G 74 -8.3 -3.53563 | ATACTGGTTCTGAAA TATCTCCTC CTG GAGGTGATA CCGCACCGATTGCTG CLH_2590 2743871 - 2743560 - | V-type ATPase, G subunit CLH_2591 2744865 - 2743864 - | ATP synthase (C/AC39) subunit TERM 3666 2744276 - 2744304 + g 77 -7.6 -4.15788 | opp_overlap 2744267, overlap 2744278 AAAAGAGTTTTCAAG TTTGTAGAATCT ATAAC AGATTCTACATA TTTATTAACAAAGTT TERM 3667 2744278 - 2744302 + g 86 -10.2 -3.6761 | opp_overlap 2744267, overlap 2744276 AAGAGTTTTCAAGTT TGTAGAATCT ATAAC AGATTCTACA TATTTATTAACAAAG CLH_2592 2745468 - 2744878 - | ATP synthase (E/31 kDa) subunit TERM 3668 2745355 - 2745368 + g 70 -5.3 -4.49041 | TGAAGCAGCCTTTTC TTGCT TTTT AGCAA TTATTTTACTTTTTT CLH_2593 2745988 - 2745503 - | V-type ATPase, K subunit CLH_2594 2747936 - 2746002 - | V-type ATPase, I subunit TERM 3669 2746923 - 2746953 + g 75 -5.6 -4.63172 | overlap 2746926 AGCATACATTGATGT TACTGATTCAAATG ATG CATTTAAATCATTA TTTTGTAATTTAATA TERM 3670 2746926 - 2746950 + g 76 -7.3 -4.40732 | overlap 2746923 ATACATTGATGTTAC TGATTCAAATG ATG CATTTAAATCA TTATTTTGTAATTTA TERM 3671 2747118 - 2747132 + g 78 -5.8 -4.82128 | opp_overlap 2747118 2747122 2747129, overlap 2747113 2747121 2747122 ATCTGTCTTTAAAAA TCTATT AGT AATAGA TTTTCTATTTACTAA TERM 3672 2747132 - 2747118 - G 72 -5.8 -4.56775 | opp_overlap 2747118 2747113 2747121 2747122, overlap 2747122 2747129 ATCTGTCTTTAAAAA TCTATT AGT AATAGA TTTTCTATTTACTAA CLH_2595 2748279 - 2747953 - | V-type sodium ATP synthase subunit G CLH_2596 2750160 - 2748496 - | radical SAM domain protein TERM 3673 2749401 - 2749415 + gr 76 -7.2 -4.30396 | overlap 2749372 2749407 TATCTGCTGATATTT CAAAGT GGA ACTTTG TTTCTGTATTTGATT CLH_2597 2750698 - 2750135 - | hypothetical protein TERM 3674 2750542 - 2750502 - GR 71 -7.1 -3.71148 | opp_overlap 2750512, overlap 2750496 2750512 CAAAATCTATTTAAA TTAAAAAAAAGTGTACATG CAT CATATTCACTTCCTTCTAA CCCCTCTTTATCATT TERM 3675 2750532 - 2750512 - GR 95 -4.7 -6.02546 | opp_overlap 2750512, overlap 2750502 TTAAATTAAAAAAAA GTGTACATG CAT CATATTCAC TTCCTTCTAACCCCT CLH_2598 2752190 - 2750889 - | hypothetical protein TERM 3676 2753399 - 2753422 + G 70 -3.2 -5.31275 | overlap 2753387 CTATAATATGTAATA TTGTTCCTGA TGAG TTAGGAAAAA TTTTTTATGGTAGAG spoVB 2752387 - 2753886 + | stage V sporulation protein B TERM 3677 2753992 - 2753956 - T 100 -13.4 -5.62288 | opp_overlap 2753956 TCAATAAAATAAAAA GTTCATATTTCTAAAC TGTAT ATTTAGAAATATGAAC TTTCTCTTTAATTAT TERM 3678 2753956 - 2753992 + T 100 -12.7 -4.41087 | opp_overlap 2753956 TCAATAAAATAAAAA GTTCATATTTCTAAA CTGTATA TTTAGAAATATGAAC TTTCTCTTTAATTAT CLH_2600 2755716 - 2754109 - | stage V sporulation protein B CLH_2601 2756694 - 2755726 - | pseudouridine synthase, RluA family CLH_2602 2757908 - 2756727 - | thermostable carboxypeptidase 1 TERM 3679 2757273 - 2757297 + g 71 -8.7 -2.83715 | opp_overlap 2757278, overlap 2757275 2757278 CACTATATGACTAGC TACAACAATAG GAT CAATTGTTGTA TGTGGTGCTGCTCCA CLH_2603 2760070 - 2757935 - | cell division protein FtsA TERM 3680 2759534 - 2759505 - G 76 -8.8 -3.57792 | TTAGTCACTTTTAAA TTCACCTTATTC ATTACA GAATAAAGTGAA TCAATAACAGATCTA TERM 3681 2760307 - 2760269 - R 78 -6.9 -4.91109 | opp_overlap 2760271, overlap 2760271 TTTTCAGCATAAAAA TAGCATAAAAATGAAGC ATTAA ACTCCATTCTTATGCTT ATTTACTTTTCTTTT TERM 3682 2760305 - 2760271 - R 86 -9.5 -4.08042 | opp_overlap 2760271, overlap 2760269 TTCAGCATAAAAATA GCATAAAAATGAAGC ATTAA ACTCCATTCTTATGC TTATTTACTTTTCTT CLH_2604 2760425 - 2760306 - | hypothetical protein CLH_2605 2762605 - 2760599 - | ATP-dependent helicase TERM 3683 2763050 - 2763037 - g 84 -3.9 -5.75538 | opp_overlap 2763037 TTTAAAAAACAAAAA TATCT TTTC AGATA ATTTTCTTAAATATT pncB 2762789 - 2764267 + | putative nicotinate phosphoribosyltransferase TERM 3684 2764291 - 2764314 + T 100 -11.2 -5.24531 | opp_overlap 2764291 AATAATATAAAAAAA CATCCTATAT TTAA ATATAGGATG TTTTTTATACCCACT TERM 3685 2764314 - 2764291 - T 100 -11.2 -5.86465 | opp_overlap 2764291 AATAATATAAAAAAA CATCCTATAT TTAA ATATAGGATG TTTTTTATACCCACT CLH_2607 2764534 - 2764328 - | hypothetical protein TERM 3686 2764741 - 2764780 + r 80 -6.6 -5.03201 | opp_overlap 2764742 2764746, overlap 2764742 2764746 AAATAAACTAAAAAA ATAAAGCCATACTACTAA GAAA TTAATAGTATGGCTTAAG TTTTTAGTTATTCTT TERM 3687 2764742 - 2764779 + r 89 -10.1 -3.5948 | opp_overlap 2764742 2764746, overlap 2764741 2764746 AATAAACTAAAAAAA TAAAGCCATACTACTAA GAAA TTAATAGTATGGCTTAA GTTTTTAGTTATTCT TERM 3688 2764779 - 2764742 - R 100 -12.3 -5.77856 | opp_overlap 2764741 2764742 2764746, overlap 2764746 AATAAACTAAAAAAA TAAAGCCATACTACTAA GAAA TTAATAGTATGGCTTAA GTTTTTAGTTATTCT TERM 3689 2764775 - 2764746 - R 100 -13.1 -5.25976 | opp_overlap 2764742 2764741 2764746, overlap 2764742 AACTAAAAAAATAAA GCCATACTACTAA GAAA TTAATAGTATGGC TTAAGTTTTTAGTTA TERM 3690 2764746 - 2764775 + r 95 -10.9 -3.48824 | opp_overlap 2764746 2764742, overlap 2764742 2764741 AACTAAAAAAATAAA GCCATACTACTAA GAAA TTAATAGTATGGC TTAAGTTTTTAGTTA CLH_2608 2765101 - 2764784 - | hypothetical protein TERM 3691 2764857 - 2764871 + g 72 -5.8 -4.48877 | GCTTTTTCTAACACC TTTTGA TTA TCAAAA TTTTCTACATCTTTG TERM 3692 2765127 - 2765144 + r 71 -7.1 -3.84712 | opp_overlap 2765126 CTCCTCATACATGAG CTACTTA ATTA TAAGTAG TTTCATATAACGTTA CLH_2609 2765665 - 2765348 - | hypothetical protein TERM 3693 2765864 - 2765908 + H 84 -9.1 -4.1964 | opp_overlap 2765869 2765872 2765875, overlap 2765861 2765869 CTACCTATTTCATTA TTAAGTAATAATAATAATTGA CTT TTAATTATTATTATTATATAA TTTTAACATATTACA TERM 3694 2765869 - 2765903 + H 87 -11.2 -3.10537 | opp_overlap 2765869 2765872 2765875, overlap 2765861 2765864 TATTTCATTATTAAG TAATAATAATAATTGA CTT TTAATTATTATTATTA TATAATTTTAACATA TERM 3695 2765903 - 2765869 - H 72 -9 -2.52834 | opp_overlap 2765861 2765869 2765864, overlap 2765872 2765875 TATTTCATTATTAAG TAATAATAATAATTGA CTT TTAATTATTATTATTA TATAATTTTAACATA CLH_2610 2765928 - 2766353 + | transcriptional regulator, Fur family TERM 3696 2766419 - 2766363 - f 100 -17.2 -4.20454 | opp_overlap 2766370 2766395 2766411, overlap 2766370 CAATAAAGAAGTAAA TTATAAATATGCCCATTTTTAATAAT TTTAT ATTATTAAAAATGGGCATATTTTTTA TAATTTTAGAATTAA TERM 3697 2766370 - 2766412 + F 100 -19.7 -5.4588 | opp_overlap 2766363 2766370, overlap 2766395 2766411 GAAGTAAATTATAAA TATGCCCATTTTTAATAAT TTTAT ATTATTAAAAATGGGCATA TTTTTTATAATTTTA TERM 3698 2766412 - 2766370 - f 100 -19.7 -4.17448 | opp_overlap 2766370 2766395 2766411, overlap 2766363 GAAGTAAATTATAAA TATGCCCATTTTTAATAAT TTTAT ATTATTAAAAATGGGCATA TTTTTTATAATTTTA CLH_2611 2766476 - 2767387 + | hypothetical protein TERM 3699 2767406 - 2767391 - T 100 -11.8 -5.64321 | AGAATAAAATAAAAA GGCCGC TAAT GCGGCC TAAAAGGGGGATGGG TERM 3700 2767429 - 2767457 + T 100 -13.5 -4.10925 | GGGATGGGGGGGGGT GCTTAATAAAAAA TAT TTTTTTATTAAGC TTTTGGAGAATATAT CLH_2612 2768128 - 2767526 - | hypothetical protein CLH_2613 2768524 - 2768243 - | hypothetical protein CLH_2614 2769093 - 2768557 - | hypothetical protein TERM 3701 2769215 - 2769178 - R 100 -11.6 -5.08255 | opp_overlap 2769183 2769208, overlap 2769183 ATTTTTAAAATAAAA TAAAACTCCATCAAAA AATTAA TTTTGATGGAGTTTTC ACTCTTTTATTTATT TERM 3702 2769210 - 2769183 - R 100 -11.5 -5.40279 | opp_overlap 2769183 2769208, overlap 2769178 TAAAATAAAATAAAA CTCCATCAAAA AATTAA TTTTGATGGAG TTTTCACTCTTTTAT TERM 3703 2769183 - 2769210 + r 100 -11.5 -4.36485 | opp_overlap 2769178 2769183, overlap 2769208 TAAAATAAAATAAAA CTCCATCAAAA AATTAA TTTTGATGGAG TTTTCACTCTTTTAT TERM 3704 2769208 - 2769219 + r 73 -4.4 -5.10665 | opp_overlap 2769183 2769178, overlap 2769183 AAATTAATTTTGATG GAGT TTTC ACTC TTTTATTTATTAAAT CLH_2615 2769873 - 2769277 - | GTP-binding protein lon 2772196 - 2769863 - | ATP-dependent protease La TERM 3705 2770187 - 2770202 + g 76 -9 -3.0218 | overlap 2770178 GCCATCTTTAGGTAC TGCACC TTCT GGTGCA TGTATATGAATATCT TERM 3706 2772520 - 2772495 - R 100 -12.1 -5.35721 | opp_overlap 2772497 ATATAAGAACAAAAA TACTGATATCT ATTT AGATATCAGTA TTAAGATTAAGCTGA TERM 3707 2772497 - 2772518 + r 85 -10.3 -3.09671 | opp_overlap 2772495 ATAAGAACAAAAATA CTGATATCT ATTT AGATATCAG TATTAAGATTAAGCT clpX 2773816 - 2772527 - | ATP-dependent Clp protease, ATP-binding subunit ClpX TERM 3708 2773030 - 2773049 + g 72 -5.1 -4.88288 | CAGCACCAAATCCCA TAGAACT TTTTCT AGTTCTA TTTTCTATTATTTTA clpP 2774455 - 2773856 - | ATP-dependent Clp protease, proteolytic subunit ClpP TERM 3709 2774005 - 2774026 + g 70 -7.5 -3.41738 | opp_overlap 2774010, overlap 2773992 2774005 2774002 2774010 CACTTAAAATCTTAT TTAAAGATT CTTT AATCTTTAA TATTCTATTAGCGTG TERM 3710 2774168 - 2774153 - G 80 -5.4 -5.19328 | ACTTGATAATAAAAA TGCTCC CATA GAAGCA GCCATACCTACACAT TERM 3711 2774585 - 2774542 - R 93 -10.1 -4.06562 | gap 2, opp_overlap 2774549 2774579, overlap 2774549 2774552 AATGTTAATCATAAA TTTGA--AATAATTGCCAGAA ATAC TTCTGGCAATTATTTTTCAAA CTATGAAATTGTGTA TERM 3712 2774549 - 2774576 + r 100 -14.4 -4.61231 | opp_overlap 2774542 2774549 2774552 ATCATAAATTTGAAA TAATTGCCAGAA ATAC TTCTGGCAATTA TTTTTCAAACTATGA TERM 3713 2774576 - 2774549 - R 100 -14.4 -3.74749 | opp_overlap 2774549, overlap 2774542 2774552 ATCATAAATTTGAAA TAATTGCCAGAA ATAC TTCTGGCAATTA TTTTTCAAACTATGA TERM 3714 2774573 - 2774552 - R 100 -11.7 -3.99407 | opp_overlap 2774549, overlap 2774549 2774542 ATAAATTTGAAATAA TTGCCAGAA ATAC TTCTGGCAA TTATTTTTCAAACTA tig 2775891 - 2774608 - | trigger factor CLH_2620 2776775 - 2775984 - | putative secreted protein CLH_2621 2777081 - 2776875 - | hypothetical protein TERM 3715 2777299 - 2777321 + H 90 -7.8 -5.0538 | TGGACATAATATTTA GTCTGCAT TTTAATT ATGCAGAC TTTTTTAGAATAAAC CLH_2622 2777399 - 2778169 + | histidinol phosphate phosphatase HisJ family TERM 3716 2778289 - 2778239 - T 100 -14.5 -4.50627 | gap 1, opp_overlap 2778239 TATGCACTAAATAAA TGGACTAAGTAATTGAATTTTAAG AATA CCTTAA-TTCAATTACTTAGTCCA TTTTACTCATGCACA TERM 3717 2778239 - 2778289 + T 100 -13.2 -4.30576 | gap 2, opp_overlap 2778239 TATGCACTAAATAAA TGGACTAAGTAATTGAATTTTAAG AATAC CTTAA--TTCAATTACTTAGTCCA TTTTACTCATGCACA hisE 2778679 - 2778353 - | phosphoribosyl-ATP diphosphatase CLH_2624 2779030 - 2778701 - | histidine biosynthesis bifunctional protein hisIE TERM 3718 2778838 - 2778850 + g 80 -6.3 -4.85396 | GACCTGATGTAGACC CTTTG TTC CAAAG TTTTCTTCTGCTTCT TERM 3719 2779151 - 2779164 + r 80 -3.1 -5.84381 | AATTTAAATTCTCTA TACTC TAAT GGGTA TTTTTTTATTAATCA hisF 2779909 - 2779148 - | imidazoleglycerol phosphate synthase, cyclase subunit TERM 3720 2779246 - 2779227 - G 70 -7.8 -3.36655 | opp_overlap 2779229 2779231 2779235 TCATAATGAAACAGA GATGCTGC TAAT GCTGCATC AGAAGTATTATTTTT hisA 2780660 - 2779947 - | phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase hisH 2781277 - 2780657 - | imidazole glycerol phosphate synthase, glutamine amidotransferase subunit TERM 3721 2781184 - 2781195 + g 70 -3 -5.2894 | TTTCAATTTCATCCT TATC ACTT GATA TTTTATTTTCTATTT hisB 2781886 - 2781299 - | imidazoleglycerol-phosphate dehydratase CLH_2629 2782928 - 2781876 - | histidinol-phosphate aminotransferase hisD 2784215 - 2782929 - | histidinol dehydrogenase hisG 2784900 - 2784277 - | ATP phosphoribosyltransferase hisZ 2786051 - 2784903 - | ATP phosphoribosyltransferase, regulatory subunit TERM 3722 2785450 - 2785476 + g 80 -5.4 -5.35354 | overlap 2785447 2785450 TTTATATCTAAGCTT TTTAGAAAGTTT TCT AAATTTTTTAAA TTTTTTCCTTCTATC TERM 3723 2785450 - 2785467 + g 84 -5.7 -5.32608 | overlap 2785447 2785450 TTTATATCTAAGCTT TTTAGAA AGTT TTCTAAA TTTTTTAAATTTTTT TERM 3724 2786086 - 2786111 + r 72 -7.8 -3.54743 | overlap 2786084 2786089 TTGCATTTTTAATTT TAACGATTTA CCGCGT TAAATCGTTA TTGTAATTAATAATA TERM 3725 2786348 - 2786374 + r 71 -6.7 -4.14633 | opp_overlap 2786348, overlap 2786346 TTTTCATAAAAAAAA GCTATTTTGAA ATAAA TTCAAAACAGC TCTTTTTTCAGACTA TERM 3726 2786374 - 2786348 - R 100 -8.9 -5.93809 | opp_overlap 2786348 2786346 TTTTCATAAAAAAAA GCTATTTTGAA ATAAA TTCAAAACAGC TCTTTTTTCAGACTA CLH_2633 2786919 - 2786413 - | diamine acetyltransferase 1 TERM 3727 2786994 - 2786970 - R 80 -6.4 -4.94262 | opp_overlap 2786970 TATACCAAAAATAAA CATCTAGCGG ATATG CCCCCAGATG TTTTTATAACAGATA TERM 3728 2787026 - 2787006 - R 72 -8.5 -3.21593 | opp_overlap 2787006 2787012 2787016, overlap 2787004 2787016 GATGTTTTTATAACA GATATTTAA ATA TTAAATATC TTTTTAATATTTGTT TERM 3729 2787006 - 2787026 + r 91 -8.5 -4.97461 | opp_overlap 2787004 2787006 2787016, overlap 2787012 2787016 GATGTTTTTATAACA GATATTTAA ATA TTAAATATC TTTTTAATATTTGTT thiI 2788323 - 2787166 - | thiamine biosynthesis/tRNA modification protein ThiI CLH_2635 2789468 - 2788323 - | cysteine desulfurase TERM 3730 2789542 - 2789585 + r 73 -7.9 -3.75617 | gap 1, opp_overlap 2789550 TATAATAAATTTTAT TCA-TATAATTATGTATTCA TATTC TGAATACATAATTAAAGTGA TTGTTGAACTTTTTT TERM 3731 2789576 - 2789550 - R 83 -9.7 -3.52102 | opp_overlap 2789542 ATTTTATTCATATAA TTATGTATTCA TATTC TGAATACATAA TTAAAGTGATTGTTG TERM 3732 2789772 - 2789803 + r 74 -8.9 -3.05616 | opp_overlap 2789777, overlap 2789777 TTAATATTATGCTCA AAAAAGAGGATTC CAATTC GAATCCTCTTTTC GTTTATCTGATAGTA TERM 3733 2789777 - 2789798 + r 89 -8.8 -4.65153 | opp_overlap 2789777, overlap 2789772 ATTATGCTCAAAAAA GAGGATTC CAATTC GAATCCTC TTTTCGTTTATCTGA TERM 3734 2789798 - 2789777 - R 100 -8.8 -5.03715 | opp_overlap 2789777 2789772 ATTATGCTCAAAAAA GAGGATTC CAATTC GAATCCTC TTTTCGTTTATCTGA CLH_2636 2790829 - 2789978 - | DegV family protein TERM 3735 2791067 - 2791026 - R 88 -8.3 -4.87592 | gap 1, opp_overlap 2791026 TTATATACAACAAAA GAAGATATAGCATCTATTAA ATT TTCATAG-TGCCATACCTTC TTCATGTTAATAAAT CLH_2637 2791624 - 2791187 - | ACT domain protein thrB 2792520 - 2791624 - | homoserine kinase thrC 2793987 - 2792524 - | threonine synthase TERM 3736 2794122 - 2794091 - R 70 -6 -4.33928 | opp_overlap 2794085 2794081 2794094, overlap 2794087 2794085 TATTTTAAATACAAA TAAGCATAACTATT GTTA AATAGAAATGCTTA TTGGCATTAATTGTA CLH_2640 2795044 - 2794106 - | hypothetical protein CLH_2641 2795316 - 2796299 + | lipase TERM 3737 2796279 - 2796320 + T 100 -14.9 -4.86621 | opp_overlap 2796270 2796284, overlap 2796284 TTAAGATTTATAGTA AAAAATTCTCCATTATATT AATT AATATAATGGAGAATTTTA TTTTTACTTCAAACT TERM 3738 2796315 - 2796284 - T 100 -14.8 -5.22312 | opp_overlap 2796284 2796279 ATTTATAGTAAAAAA TTCTCCATTATATT AATT AATATAATGGAGAA TTTTATTTTTACTTC TERM 3739 2796284 - 2796315 + T 100 -14.8 -5.34655 | opp_overlap 2796284, overlap 2796279 ATTTATAGTAAAAAA TTCTCCATTATATT AATT AATATAATGGAGAA TTTTATTTTTACTTC CLH_2642 2797513 - 2796374 - | Ion channel family CLH_2643 2798140 - 2797583 - | hypothetical protein TERM 3740 2798637 - 2798616 - g 74 -2.5 -5.57888 | gap 1, opp_overlap 2798616 AGCAAAAAAAGAAAA TAAAAAT-CT ACC AGTATTTTTA CTTGGTCATGATTTA CLH_2644 2798332 - 2799102 + | lysophospholipase TERM 3741 2799210 - 2799265 + T 100 -20.4 -4.12066 | gap 1, opp_overlap 2799214, overlap 2799214 TTTTTATTATTAAAC T-AAACAGAACTAAATCTGATAGATTA ATT TAATCTATCAGATTTAGTTCTGTTACA TTGTTATATTTTATA TERM 3742 2799214 - 2799260 + T 100 -27.2 -3.33117 | opp_overlap 2799214, overlap 2799210 TATTATTAAACTAAA CAGAACTAAATCTGATAGATTA ATT TAATCTATCAGATTTAGTTCTG TTACATTGTTATATT TERM 3743 2799260 - 2799214 - T 100 -27.2 -4.11623 | opp_overlap 2799214 2799210 TATTATTAAACTAAA CAGAACTAAATCTGATAGATTA ATT TAATCTATCAGATTTAGTTCTG TTACATTGTTATATT CLH_2645 2800079 - 2799282 - | sirohydrochlorin cobaltochelatase hemL 2801352 - 2800069 - | glutamate-1-semialdehyde-2,1-aminomutase hemB 2802369 - 2801404 - | delta-aminolevulinic acid dehydratase CLH_2648 2803847 - 2802372 - | uroporphyrinogen III synthase/methyltransferase TERM 3744 2803856 - 2803895 + r 93 -12 -3.2964 | gap 1, opp_overlap 2803863 2803865, overlap 2803852 2803860 2803863 TATTCATAATCTATT TTAATAAGA-TATTATGTA CTT TACATAATAGTCTTATTAA TTCTAAGCCACCTTT TERM 3745 2803860 - 2803891 + r 74 -8.4 -3.44146 | gap 1, opp_overlap 2803863 2803865, overlap 2803852 2803856 2803863 CATAATCTATTTTAA TAAGA-TATTATGTA CTT TACATAATAGTCTTA TTAATTCTAAGCCAC TERM 3746 2803885 - 2803865 - R 74 -8.5 -3.40611 | opp_overlap 2803852 2803863 2803860 2803856, overlap 2803863 TCTATTTTAATAAGA TATTATGTA CTT TACATAATA GTCTTATTAATTCTA hemC 2804934 - 2804062 - | porphobilinogen deaminase TERM 3747 2804817 - 2804829 + g 77 -4.9 -5.25893 | opp_overlap 2804826, overlap 2804826 TTCTATCTCCCTCAG TTACT ATA AGTAA TTTTTTACTATCTAT CLH_2650 2805660 - 2804986 - | precorrin-2 dehydrogenase hemA 2806823 - 2805618 - | glutamyl-tRNA reductase TERM 3748 2807205 - 2807173 - R 70 -5 -4.84527 | opp_overlap 2807173 TCTATATATTAAAAA GTTCAAGTTGTA TAAAATAAT TACTACTTGAAC TTTTTTAAATACTAT TERM 3749 2807173 - 2807205 + r 74 -5 -5.11613 | opp_overlap 2807173 TCTATATATTAAAAA GTTCAAGTTGTA TAAAATAAT TACTACTTGAAC TTTTTTAAATACTAT CLH_2652 2808101 - 2807244 - | anaerobic sulfite reductase subunit C CLH_2653 2808459 - 2809100 + | undecaprenyl pyrophosphate synthetase TERM 3750 2809179 - 2809154 - T 74 -6.3 -4.67755 | opp_overlap 2809154 ATATTTATGTAAAAA GCTATTTCA TTTAATTT TGAAATAGC TTTTTTTTGAGTTCA TERM 3751 2809154 - 2809179 + T 90 -6.3 -5.86332 | opp_overlap 2809154 ATATTTATGTAAAAA GCTATTTCA TTTAATTT TGAAATAGC TTTTTTTTGAGTTCA TERM 3752 2809458 - 2809446 - T 70 -6.3 -4.24294 | opp_overlap 2809453 ACTAAGCACTTAAAA TTCCT ATT AGGAA TACCTGTTATTATCA TERM 3753 2809692 - 2809730 + T 87 -10.6 -3.25341 | opp_overlap 2809697, overlap 2809697 AAGATAATTAAATAT AAAAATAAGGCTTTAAGA TTA TATTAAAGCCTTATTTTC TCTTAATATTAAACT TERM 3754 2809725 - 2809697 - T 100 -10.5 -5.23644 | opp_overlap 2809697 2809692 AATTAAATATAAAAA TAAGGCTTTAAGA TTA TATTAAAGCCTTA TTTTCTCTTAATATT TERM 3755 2809697 - 2809725 + T 100 -10.5 -4.73094 | opp_overlap 2809697, overlap 2809692 AATTAAATATAAAAA TAAGGCTTTAAGA TTA TATTAAAGCCTTA TTTTCTCTTAATATT CLH_2654 2811230 - 2809878 - | sodium transporter family protein TERM 3756 2810944 - 2810928 - G 79 -3.7 -5.626 | overlap 2810930 2810931 2810940 TACTGTATAAAAAAA CAGCATA CAA TATGTTG CAAGTATTGCAAAAA TERM 3757 2811564 - 2811528 - R 100 -13.9 -4.58685 | opp_overlap 2811530, overlap 2811530 AAATTCCTGCAAAAA TAGAGAGTAGCTATGTT TTA AGCATAGCTACTCTCTT ATTCTGATATCTCAT TERM 3758 2811562 - 2811530 - R 100 -16.5 -3.90316 | opp_overlap 2811530, overlap 2811528 ATTCCTGCAAAAATA GAGAGTAGCTATGTT TTA AGCATAGCTACTCTC TTATTCTGATATCTC TERM 3759 2811530 - 2811562 + r 100 -18.7 -3.88175 | opp_overlap 2811528 2811530 ATTCCTGCAAAAATA GAGAGTAGCTATGTT TTA AGCATAGCTACTCTC TTATTCTGATATCTC metA 2812483 - 2811563 - | homoserine O-succinyltransferase TERM 3760 2812331 - 2812341 + g 84 -4 -5.81032 | overlap 2812334 CCTCAACAATTGATT TTCT GCT AGAA TTTTTTTTGGCATTA TERM 3761 2812525 - 2812540 + H 70 -3.4 -5.38549 | overlap 2812512 CTTTTAAAAATGCTT TTAAAT TATT ATTTAA TTTTTATTATTTACA CLH_2656 2812853 - 2813911 + | hypothetical protein TERM 3762 2813920 - 2813940 + T 100 -11.3 -6.23545 | opp_overlap 2813920 TGAATAACAAAAAAA TCCAACTAA TTT TTAGTTGGA TTTTTTTTATTTAGC TERM 3763 2813940 - 2813920 - T 100 -11.3 -5.95946 | opp_overlap 2813920 TGAATAACAAAAAAA TCCAACTAA TTT TTAGTTGGA TTTTTTTTATTTAGC CLH_2657 2814833 - 2814024 - | phosphatase YidA CLH_2658 2815087 - 2815710 + | putative sporulation protein YtaF TERM 3764 2815768 - 2815727 - T 100 -15.7 -4.87665 | gap 1, opp_overlap 2815727 TCCTATCTATAAAAA TAGCTGTATGAAAATAATTT CTA AAATTATTT-CATACAGCTA TTTTTATATTTCAGT TERM 3765 2815727 - 2815768 + T 100 -15.7 -5.20783 | gap 1, opp_overlap 2815727 TCCTATCTATAAAAA TAGCTGTATGAAAATAATTT CTA AAATTATTT-CATACAGCTA TTTTTATATTTCAGT cobQ 2817397 - 2815892 - | cobyric acid synthase CobQ TERM 3766 2816066 - 2816051 - G 72 -6.2 -4.26871 | CAAGGCATTAATAAA GGAATT AGTA AATTCC TCTGAATCGAAAATT CLH_2660 2818102 - 2817449 - | protein containing ATP-binding domain CLH_2661 2819246 - 2818164 - | threonine-phosphate decarboxylase TERM 3767 2818289 - 2818313 + g 79 -8.9 -3.48465 | AATTGCTACAACTTC TTATTAAAATA TTA TATTTTAATAA TTCTAACTTTAAATT cobD 2820189 - 2819239 - | cobalamin biosynthesis protein CobD CLH_2663 2820916 - 2820308 - | phosphoglycerate mutase family protein CLH_2664 2821322 - 2820909 - | hypothetical protein cobS 2822196 - 2821438 - | cobalamin-5-phosphate synthase CLH_2666 2822759 - 2822205 - | hypothetical protein CLH_2667 2823291 - 2822761 - | ATP:corrinoid adenosyltransferase BtuR/CobO/CobP TERM 3768 2822889 - 2822905 + g 73 -4.4 -5.06103 | CTGTCATCACTACTT CAAGCC CGTTA GGTTTG TTTTTTAAGAATTCT TERM 3769 2823521 - 2823472 - R 75 -7 -4.29139 | opp_overlap 2823480, overlap 2823469 2823478 2823480 2823483 TTAAATTCAAAATAA TTATAACATAAGCCAATGATA-TA TTAT TACTATCATTGGCTTAT-TTATTA TTTCCTTAATATACT TERM 3770 2823516 - 2823478 - R 76 -8.5 -3.68416 | gap 1, opp_overlap 2823480, overlap 2823472 2823469 2823480 2823483 TCAAAATAATTATAA CATAAGCCAATGATA-TA TTAT TACTATCATTGGCTTATT TATTATTTCCTTAAT TERM 3771 2823514 - 2823480 - R 93 -11.1 -3.40342 | gap 1, opp_overlap 2823480, overlap 2823478 2823472 2823469 2823483 AAAATAATTATAACA TAAGCCAATGATA-TA TTAT TACTATCATTGGCTTA TTTATTATTTCCTTA TERM 3772 2823480 - 2823514 + r 100 -11.1 -4.62669 | gap 1, opp_overlap 2823478 2823472 2823469 2823480 2823483 AAAATAATTATAACA TAAGCCAATGATA-TA TTAT TACTATCATTGGCTTA TTTATTATTTCCTTA TERM 3773 2823511 - 2823483 - R 76 -8.4 -3.80597 | gap 1, opp_overlap 2823480, overlap 2823480 2823478 2823472 2823469 ATAATTATAACATAA GCCAATGATA-TA TTAT TACTATCATTGGC TTATTTATTATTTCC CLH_2668 2825135 - 2823564 - | glycine betaine/carnitine/choline transport system permease protein opucb CLH_2669 2826264 - 2825137 - | glycine betaine/L-proline ABC transporter, ATP-binding protein TERM 3774 2826152 - 2826137 - G 71 -7.6 -3.58343 | opp_overlap 2826124 2826137 TTTATCATTTTTAAA GTGGTA GTTT TACCAC AACCGCTTTCACCAA TERM 3775 2826320 - 2826289 - R 83 -9.7 -3.53012 | opp_overlap 2826289 TCCTCTTTTTGCAAA GTAACAACCTTAT TGTATC ATAAAGTTGTTAC TTTTGGCAAAAAAAT TERM 3776 2826289 - 2826320 + r 77 -7.5 -4.07687 | opp_overlap 2826289 TCCTCTTTTTGCAAA GTAACAACCTTAT TGTATC ATAAAGTTGTTAC TTTTGGCAAAAAAAT TERM 3777 2826360 - 2826335 - R 100 -7.7 -5.40072 | opp_overlap 2826339 CTTTTGGCAAAAAAA TAAAGACAACC GACT GATTGTCTCTA TTAAAATCATTGTGG CLH_2670 2826996 - 2826367 - | transcriptional regulator, GntR family TERM 3778 2827010 - 2827044 + r 100 -14 -3.84284 | opp_overlap 2827016 2827039, overlap 2827025 ATTTATATATCCTCT TATTAAGTGTATTTAG TTA TTAAATACACTTAATA TTTAATAACTTTTCA CLH_2671 2827684 - 2827199 - | putative thiol peroxidase CLH_2672 2827848 - 2828180 + | hypothetical protein TERM 3779 2828177 - 2828165 - T 88 -4.8 -5.87996 | opp_overlap 2828165 GAAGCAAGAAAAAAA GGAG AATAA CTCC TAATTTAAAAAGTGA CLH_2673 2828733 - 2828182 - | hypothetical protein cobT 2830026 - 2828935 - | nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase cobK 2831275 - 2830511 - | precorrin-6x reductase cobJ 2832012 - 2831275 - | precorrin-3B C17-methyltransferase CLH_2677 2833092 - 2832031 - | CbiG cobM 2833847 - 2833089 - | precorrin-4 C11-methyltransferase TERM 3780 2833683 - 2833710 + g 77 -6.4 -4.6856 | opp_overlap 2833670 2833667 2833686, overlap 2833684 ATCATCTAAAGTCAT AGATGCTGAATT ATAA AATTTAGCATCC TTTTTACAGTATTTC TERM 3781 2833684 - 2833709 + g 85 -9.9 -3.40051 | opp_overlap 2833670 2833667 2833686, overlap 2833683 TCATCTAAAGTCATA GATGCTGAATT ATAA AATTTAGCATC CTTTTTACAGTATTT cobI 2834697 - 2834035 - | precorrin-2 C20-methyltransferase TERM 3782 2834462 - 2834478 + g 79 -3.7 -5.60864 | opp_overlap 2834462 TTCTTTTCAATAAAG TCATAAG CTT CTTTTGA TTTTTTTAATCTATC CLH_2680 2835277 - 2834699 - | putative cobalt-precorrin-6Y C(15)-methyltransferase cbiE 2835892 - 2835290 - | precorrin-6y C5,15-methyltransferase (decarboxylating), CbiE subunit cbiD 2837045 - 2835900 - | cobalamin biosynthesis protein CbiD TERM 3783 2836015 - 2836032 + g 76 -7.1 -4.35116 | TTTAGTATTTTTTGA CCTATAT TTTC ATATAGG TTTTCATATCCACTA cobH 2837816 - 2837193 - | precorrin-8X methylmutase cobB 2839280 - 2837964 - | cobyrinic Acid a,c-diamide synthase CLH_2685 2840306 - 2839470 - | sirohydrochlorin cobaltochelatase TERM 3784 2840575 - 2840546 - H 72 -3.8 -5.42131 | gap 1, opp_overlap 2840547, overlap 2840548 TAATTATACAAAAAA TA-TCCTCACTAA ATACA TTAGTAAGGACTA TATCGATTATATAAC TERM 3785 2840572 - 2840548 - H 78 -8 -4.32846 | opp_overlap 2840547, overlap 2840546 ATTATACAAAAAATA TCCTCACTAA ATACA TTAGTAAGGA CTATATCGATTATAT CLH_2686 2841127 - 2841663 + | hypothetical protein CLH_2687 2843059 - 2841746 - | sodium:neurotransmitter symporter family protein TERM 3786 2843303 - 2843264 - R 87 -6 -5.79588 | opp_overlap 2843259 2843264 CTAAAAGTAAAAAAA CAGTGTTAATATTAGT TTTTATTT ATTAATATCAACACTG TTTTCATTTTATAAT TERM 3787 2843264 - 2843303 + r 76 -6 -4.74012 | opp_overlap 2843264, overlap 2843259 CTAAAAGTAAAAAAA CAGTGTTAATATTAGT TTTTATTT ATTAATATCAACACTG TTTTCATTTTATAAT CLH_2688 2843492 - 2843328 - | hypothetical protein TERM 3788 2843780 - 2843810 + H 100 -8.5 -5.4593 | gap 1, opp_overlap 2843780 2843783 CACCATTGTAGTAAA CATCAGTG-TTTAG AGTT CTAAATCACTGGTG TTTTTCTTATTTTCC TERM 3789 2843964 - 2843931 - H 100 -10.5 -5.24129 | gap 1, opp_overlap 2843940, overlap 2843940 TTGTTTTATAAAAAA TAATCAAAAGGAGGTG ATT CACCTCC-TTTGAATA ATATATAATGTTTTT TERM 3790 2843940 - 2843956 + H 95 -12.3 -3.70863 | opp_overlap 2843931 2843940 AAAAAATAATCAAAA GGAGGTG ATT CACCTCC TTTGAATAATATATA TERM 3791 2843956 - 2843940 - H 100 -12.3 -4.72772 | opp_overlap 2843940, overlap 2843931 AAAAAATAATCAAAA GGAGGTG ATT CACCTCC TTTGAATAATATATA CLH_2690 2844145 - 2844261 + | hypothetical protein TERM 3792 2844328 - 2844290 - T 80 -6.3 -5.12068 | gap 1, opp_overlap 2844292 2844294, overlap 2844292 CATACTCAATAAAAA CAGACCTAAAAGA-TAAA TTCA TTTACTCTTTTAGGCCTT ATTTTTGTTTATTTT TERM 3793 2844326 - 2844292 - T 82 -8.9 -4.17914 | gap 1, opp_overlap 2844292 2844294, overlap 2844290 TACTCAATAAAAACA GACCTAAAAGA-TAAA TTCA TTTACTCTTTTAGGCC TTATTTTTGTTTATT TERM 3794 2844292 - 2844326 + T 78 -6.7 -4.78345 | gap 1, opp_overlap 2844290 2844292, overlap 2844294 TACTCAATAAAAACA GACCTAAAAGA-TAAA TTCA TTTACTCTTTTAGGCC TTATTTTTGTTTATT CLH_2691 2845364 - 2844411 - | fructokinase CLH_2692 2845786 - 2845460 - | glyoxalase/bleomycin resistance protein/dioxygenase CLH_2693 2846877 - 2845828 - | sorbitol dehydrogenase CLH_2694 2848178 - 2847057 - | phosphotransferase system, EIIC TERM 3795 2848237 - 2848202 - R 73 -6.4 -4.20516 | opp_overlap 2848203 2848211, overlap 2848203 CCCTTACCCAAGAAA CTTATTAAAGTACTTT TCTA AAAGTCCTTTAATAAT ATATTAAAAACTTTT TERM 3796 2848203 - 2848236 + r 82 -9.9 -3.08088 | opp_overlap 2848202 2848203, overlap 2848211 CCTTACCCAAGAAAC TTATTAAAGTACTTT TCTA AAAGTCCTTTAATAA TATATTAAAAACTTT TERM 3797 2848236 - 2848203 - R 85 -9.9 -3.11988 | opp_overlap 2848203 2848211, overlap 2848202 CCTTACCCAAGAAAC TTATTAAAGTACTTT TCTA AAAGTCCTTTAATAA TATATTAAAAACTTT TERM 3798 2848444 - 2848474 + r 100 -9.2 -5.04265 | opp_overlap 2848444, overlap 2848473 TAAAAAACAAAAAAA TCAAGAAAATAGTT ATA AGCTATTTCCTTGA TTTTTAATCTTTTTT TERM 3799 2848474 - 2848444 - R 100 -9.2 -6.28401 | opp_overlap 2848444 2848473 TAAAAAACAAAAAAA TCAAGAAAATAGTT ATA AGCTATTTCCTTGA TTTTTAATCTTTTTT TERM 3800 2848473 - 2848483 + r 70 -4 -5.22943 | opp_overlap 2848444, overlap 2848444 ATAAGCTATTTCCTT GATT TTT AATC TTTTTTAAATTTGAT CLH_2695 2849615 - 2848488 - | ROK family protein TERM 3801 2849674 - 2849730 + H 75 -7.4 -4.23244 | opp_overlap 2849656 2849677 2849679 2849692, overlap 2849679 AAATATAATTTATAT TAATA-TTTTAACATATAATTTTTATTA TAA TAATAAAA-TCATATGTTAAAATTATTA TTTAATTATTTTGTA TERM 3802 2849726 - 2849677 - H 74 -8.5 -3.30453 | gap 1, opp_overlap 2849674 2849679, overlap 2849656 2849679 2849692 TATAATTTATATTAA TATTTTAACATATAATTTTTATTA TAA TAATAAAA-TCATATGTTAAAATT ATTATTTAATTATTT TERM 3803 2849724 - 2849679 - H 90 -11.1 -3.21288 | gap 1, opp_overlap 2849674 2849679, overlap 2849656 2849677 2849692 TAATTTATATTAATA TTTTAACATATAATTTTTATTA TAA TAATAAAA-TCATATGTTAAAA TTATTATTTAATTAT TERM 3804 2849679 - 2849724 + H 82 -8.9 -4.16787 | gap 1, opp_overlap 2849656 2849679 2849677 2849692, overlap 2849674 TAATTTATATTAATA TTTTAACATATAATTTTTATTA TAA TAATAAAA-TCATATGTTAAAA TTATTATTTAATTAT CLH_2696 2849886 - 2850377 + | flavodoxin CLH_2697 2850979 - 2850512 - | CheX protein TERM 3805 2850766 - 2850777 + g 86 -4.4 -5.82316 | opp_overlap 2850771, overlap 2850761 2850771 GCATTCCCATCATCA TAGC AGAT GCTA TTTTTTTTGCATCAT CLH_2698 2851836 - 2850961 - | putative chemotaxis sensory transduction protein CLH_2699 2852154 - 2852014 - | hypothetical protein TERM 3806 2852334 - 2852276 - R 100 -21.1 -3.53012 | opp_overlap 2852281 2852331, overlap 2852281 TTTGCCCTTTTTAAA TAAAATTAAGCATTATACAATATATAA CTTTC TTATATATTGTATAATGCTTAATTTAA AAGTTTTAATACTAT TERM 3807 2852281 - 2852329 + r 100 -21 -3.67068 | opp_overlap 2852276 2852281 CCTTTTTAAATAAAA TTAAGCATTATACAATATATAA CTTTC TTATATATTGTATAATGCTTAA TTTAAAAGTTTTAAT TERM 3808 2852329 - 2852281 - R 100 -21 -4.86731 | opp_overlap 2852281, overlap 2852276 CCTTTTTAAATAAAA TTAAGCATTATACAATATATAA CTTTC TTATATATTGTATAATGCTTAA TTTAAAAGTTTTAAT TERM 3809 2852441 - 2852392 - R 95 -12.1 -3.68506 | gap 1, opp_overlap 2852390 2852392 2852397, overlap 2852397 TAATACTTATGTAAA TAAAACTATATCATTCTTATAAAT ACA ACTCATAA-AATGATATAGTTTTA TATTTAACTTTACTT TERM 3810 2852392 - 2852441 + r 72 -7.7 -3.52506 | gap 1, opp_overlap 2852392 2852397, overlap 2852390 2852397 TAATACTTATGTAAA TAAAACTATATCATTCTTATAAAT ACA ACTCATAA-AATGATATAGTTTTA TATTTAACTTTACTT TERM 3811 2852436 - 2852397 - R 86 -7.6 -4.90778 | gap 1, opp_overlap 2852392 2852390 2852397, overlap 2852392 CTTATGTAAATAAAA CTATATCATTCTTATAAAT ACA ACTCATAA-AATGATATAG TTTTATATTTAACTT CLH_2700 2853731 - 2852463 - | uracil permease TERM 3812 2853343 - 2853356 + g 76 -3.8 -5.43553 | GGTCCAACAACCTGT GCTG GTAATA CAGC TTTTATTTTTTCAGT TERM 3813 2853966 - 2854020 + r 78 -8.4 -3.87412 | gap 1, opp_overlap 2853966 AAATAATTTAAAAAA TGGTAATTATCACACTAATT-TATA AGTTAA TATAAAATCAATGTGATAATTACCA TTAGTTTTTCCTATT TERM 3814 2854020 - 2853966 - R 100 -12.8 -5.23016 | gap 1, opp_overlap 2853966 AAATAATTTAAAAAA TGGTAATTATCACACTAATT-TATA AGTTAA TATAAAATCAATGTGATAATTACCA TTAGTTTTTCCTATT CLH_2701 2854933 - 2854151 - | putative phage lysozyme CLH_2702 2856069 - 2855206 - | beta-lactamase domain protein CLH_2703 2856919 - 2856086 - | methyl-accepting chemotaxis protein TERM 3815 2857272 - 2857236 - R 100 -11.9 -5.65177 | opp_overlap 2857236 ATACTTATAAAAAAA TAGGTCTAAATATTATT TAA ATTAATATCTAGACCTA TTTGCATAATTATTA TERM 3816 2857236 - 2857272 + r 84 -9.7 -3.74056 | opp_overlap 2857236 ATACTTATAAAAAAA TAGGTCTAAATATTATT TAA ATTAATATCTAGACCTA TTTGCATAATTATTA CLH_2704 2859140 - 2857305 - | lipid A export ATP-binding/permease protein MsbA TERM 3817 2857696 - 2857709 + g 71 -8.1 -3.20878 | opp_overlap 2857696 2857693 AAATTATGAACATGA GCAGC TTTA GCTGC TTCAATTACATCTTC CLH_2705 2861364 - 2859133 - | ABC transporter, ATP-binding/permease protein TERM 3818 2861543 - 2861575 + H 74 -8.7 -3.076 | opp_overlap 2861542, overlap 2861542 2861556 TGAAATTTAATCTAT GTCAATAATTATTTA CTA TAAGTATTTATTGAC CTTTATATAATTAAC CLH_2706 2861649 - 2862104 + | transcriptional regulator, MarR family TERM 3819 2862153 - 2862119 - T 77 -8.8 -3.46913 | opp_overlap 2862121, overlap 2862121 ATATAGAACTTACAA GAGACTTCAATATC TAATGAG GATATTGAAGTCTT TTAGATTTATTTAAA TERM 3820 2862121 - 2862151 + T 100 -12.1 -4.45261 | opp_overlap 2862119 2862121 ATAGAACTTACAAGA GACTTCAATATCT AATGA GGATATTGAAGTC TTTTAGATTTATTTA TERM 3821 2862151 - 2862121 - T 93 -11.4 -3.29959 | opp_overlap 2862121, overlap 2862119 ATAGAACTTACAAGA GACTTCAATATC TAATGAG GATATTGAAGTC TTTTAGATTTATTTA TERM 3822 2862288 - 2862241 - T 95 -13 -3.34501 | opp_overlap 2862241, overlap 2862246 2862259 AGATAATTTGTACAA TATAAGCATAGATGAAAATCAC ATTA GTGATAGACATCTATGCTTATA TTTTGTGTAAATACA TERM 3823 2862241 - 2862288 + T 100 -13 -4.55287 | opp_overlap 2862241 2862246 2862259 AGATAATTTGTACAA TATAAGCATAGATGAAAATCAC ATTA GTGATAGACATCTATGCTTATA TTTTGTGTAAATACA TERM 3824 2862283 - 2862246 - T 76 -8.5 -3.75378 | opp_overlap 2862241, overlap 2862241 2862259 ATTTGTACAATATAA GCATAGATGAAAATCAC ATTA GTGATAGACATCTATGC TTATATTTTGTGTAA CLH_2709 2866413 - 2864218 - | glycerol-1-phosphate dehydrogenase TERM 3825 2866844 - 2866864 + H 81 -5.5 -5.28481 | opp_overlap 2866844 ACCTTTTGTATAAAA CTATTCATA TTT TAAGAATAG TTTTTTAATTAAATA TERM 3826 2867165 - 2867191 + G 86 -9.6 -3.75024 | ATAGACCTGATGTTT CTTTTTCTTATG AAA CAAAAGAAAAAG TTCTTAATGCTGCAA CLH_2710 2867065 - 2868165 + | putative transcriptional regulator TERM 3827 2868235 - 2868188 - f 73 -6.6 -4.24342 | opp_overlap 2868193, overlap 2868189 TTTTTGATTAACAAA TTTTATTCAAGAATATAACTTT ATAT AAAGTCATATTCTTGAATTATT TAAATTTTCAAAATA TERM 3828 2868234 - 2868189 - f 85 -10.1 -3.14284 | opp_overlap 2868193, overlap 2868188 TTTTGATTAACAAAT TTTATTCAAGAATATAACTTT ATAT AAAGTCATATTCTTGAATTAT TTAAATTTTCAAAAT TERM 3829 2868193 - 2868230 + F 100 -13.1 -4.08307 | opp_overlap 2868189 2868188 GATTAACAAATTTTA TTCAAGAATATAACTTT ATAT AAAGTCATATTCTTGAA TTATTTAAATTTTCA TERM 3830 2868467 - 2868423 - f 100 -17.6 -5.48825 | opp_overlap 2868423 TATTATTTAAAAAAA CAATGCTCACTATATTAAAA TACGT TTTTAATTTAGTGAGCATTG TTTTTTTTATTAAGC TERM 3831 2868423 - 2868467 + F 100 -17.6 -6.09888 | opp_overlap 2868423 TATTATTTAAAAAAA CAATGCTCACTATATTAAAA TACGT TTTTAATTTAGTGAGCATTG TTTTTTTTATTAAGC CLH_2711 2868725 - 2869507 + | zinc transporter TERM 3832 2869752 - 2869728 - T 70 -3 -5.63103 | gap 1 TTCTAATCAAAAAAA GAGCTAC-TTA AATT TAACGTAACTC TTTTCTTAATATAAT CLH_2712 2870545 - 2869769 - | galactose-1-phosphate uridylyltransferase TERM 3833 2871895 - 2871876 - g 77 -5.1 -5.24003 | AATAAAAATGAAAAA TCTGATT TAAATC AATCAGA AATTCTATCTACTGA CLH_2713 2870862 - 2871944 + | YpuA CLH_2714 2872063 - 2872536 + | hypothetical protein TERM 3834 2872541 - 2872581 + T 100 -11.3 -5.75822 | opp_overlap 2872545 2872554, overlap 2872545 TTTTAAGATAGTCAT TAAAGCAGAGAAATAGCTA CTT TTGCTAATTCTCTGCTTAA TTTTTTTACTTTATA TERM 3835 2872545 - 2872577 + T 100 -12.1 -4.07651 | opp_overlap 2872545 2872554, overlap 2872541 AAGATAGTCATTAAA GCAGAGAAATAGCTA CTT TTGCTAATTCTCTGC TTAATTTTTTTACTT TERM 3836 2872577 - 2872545 - T 95 -12.1 -3.79138 | opp_overlap 2872545 2872541, overlap 2872554 AAGATAGTCATTAAA GCAGAGAAATAGCTA CTT TTGCTAATTCTCTGC TTAATTTTTTTACTT CLH_2715 2873282 - 2872608 - | sulfite reductase, assimilatory-type CLH_2716 2873662 - 2873315 - | ArsC family protein TERM 3837 2873864 - 2873840 - R 100 -7.9 -5.4505 | opp_overlap 2873840 TTTCGTAATAAAAAA TGTACTCTGTA TAT TTCAGAGCACA TTTTTATAAAAATAT TERM 3838 2873840 - 2873864 + r 73 -5.7 -4.84761 | opp_overlap 2873840 TTTCGTAATAAAAAA TGTACTCTGTA TAT TTCAGAGCACA TTTTTATAAAAATAT CLH_2717 2874431 - 2873886 - | hypothetical protein TERM 3839 2874481 - 2874471 - R 87 -6.8 -5.4505 | opp_overlap 2874471 TTGCTGAATAAAAAA GAGG GTT CCTC TTTAATATTAACAGC TERM 3840 2874788 - 2874767 - R 100 -10.3 -5.2696 | opp_overlap 2874767 TTAAAAGCTAAAAAA TCATCTTGA AAAT TCAAGATGA TTTTTTTTATCTAAC TERM 3841 2874767 - 2874788 + r 100 -10.3 -6.02914 | opp_overlap 2874767 TTAAAAGCTAAAAAA TCATCTTGA AAAT TCAAGATGA TTTTTTTTATCTAAC TERM 3842 2874799 - 2874809 + r 75 -4 -5.45802 | GATGATTTTTTTTAT CTAA CTA TTAG TTTTTATTTTCAAGA CLH_2718 2875696 - 2874806 - | hypothetical protein TERM 3843 2875935 - 2875973 + r 100 -16.4 -5.30189 | opp_overlap 2875935 GAAACATATCAAAAA TAACTGTCCAAAATAAAA TTC TTCTATTTTGGACAGTTA TTTTTTAGTATTCTA TERM 3844 2875973 - 2875935 - R 100 -18.6 -4.90217 | opp_overlap 2875935 GAAACATATCAAAAA TAACTGTCCAAAATAAAA TTC TTCTATTTTGGACAGTTA TTTTTTAGTATTCTA CLH_2719 2876136 - 2875978 - | hypothetical protein TERM 3845 2876202 - 2876192 - H 73 -2.6 -5.76949 | TATTGTTAAAAAAAA TATA GAC TATA CATATAATATTAAAT CLH_2720 2876505 - 2877350 + | DegV family protein TERM 3846 2877400 - 2877423 + T 100 -10.4 -4.92314 | opp_overlap 2877400 TCTATAAAGTAAAAA GAAGCTTTGG GATT TCAAAGCTTC TTTTTATAGGTTAAT TERM 3847 2877423 - 2877400 - T 100 -9.7 -5.04601 | opp_overlap 2877400 TCTATAAAGTAAAAA GAAGCTTTG GGATTT CAAAGCTTC TTTTTATAGGTTAAT deoD 2878191 - 2877481 - | purine nucleoside phosphorylase TERM 3848 2877749 - 2877759 + g 70 -5.4 -4.57569 | ATAGGCCCAACCTTA GGTT CAA AACC TTTTTGCACGGCTAA TERM 3849 2878159 - 2878174 + g 78 -9 -3.28416 | TATGCTTTCTGCTAT TGCACC TTCT GGTGCA TTAATATGAATACTC cdd 2878653 - 2878246 - | cytidine deaminase TERM 3850 2878793 - 2878840 + r 95 -12.6 -3.6288 | gap 1, opp_overlap 2878796 2878799 2878820, overlap 2878794 2878796 2878801 ATATATTTTTTGATT AGATAAGCTAATAGTATTATTAT TAA ATAATAATA-TATTAGCTTATCC TTTAAAAATTAATTT TERM 3851 2878794 - 2878839 + r 100 -16.1 -2.77005 | gap 1, opp_overlap 2878796 2878799 2878820, overlap 2878793 2878796 2878801 TATATTTTTTGATTA GATAAGCTAATAGTATTATTAT TAA ATAATAATA-TATTAGCTTATC CTTTAAAAATTAATT TERM 3852 2878796 - 2878837 + r 91 -12.9 -2.92667 | gap 1, opp_overlap 2878796 2878799 2878820, overlap 2878794 2878793 2878801 TATTTTTTGATTAGA TAAGCTAATAGTATTATTAT TAA ATAATAATA-TATTAGCTTA TCCTTTAAAAATTAA TERM 3853 2878837 - 2878796 - R 91 -12.9 -2.78596 | gap 1, opp_overlap 2878796 2878794 2878793 2878801, overlap 2878799 2878820 TATTTTTTGATTAGA TAAGCTAATAGTATTATTAT TAA ATAATAATA-TATTAGCTTA TCCTTTAAAAATTAA TERM 3854 2878834 - 2878799 - R 89 -10.2 -3.54475 | gap 1, opp_overlap 2878796 2878794 2878793 2878801, overlap 2878796 2878820 TTTTTGATTAGATAA GCTAATAGTATTATTAT TAA ATAATAATA-TATTAGC TTATCCTTTAAAAAT TERM 3855 2878842 - 2878852 + r 73 -2.6 -5.77571 | overlap 2878843 ATATTAGCTTATCCT TTAA AAA TTAA TTTTTATTTTTTGAT TERM 3856 2878843 - 2878858 + r 70 -3.4 -5.35354 | overlap 2878842 TATTAGCTTATCCTT TAAAAA TTAA TTTTTA TTTTTTGATTATCTC CLH_2723 2879820 - 2878867 - | ABC transporter, permease protein CLH_2724 2880976 - 2879822 - | ABC transporter, permease protein TERM 3857 2879847 - 2879866 + g 83 -7.9 -4.70107 | TCCTTGTTCTTTATT TCCTCAG TATCAT CTGAGGA TTTATTATTTTCATC TERM 3858 2880014 - 2879996 - G 70 -7.6 -3.35597 | opp_overlap 2879995 2879998, overlap 2879994 TGTAGCTGCGAAATA TATAATAG TTG CTATTATA GTATCTGCAATTTCA CLH_2725 2882496 - 2880973 - | galactose/methyl galactoside import ATP-binding protein MglA TERM 3859 2882652 - 2882702 + r 82 -9.5 -3.36289 | gap 1, opp_overlap 2882658 2882667, overlap 2882658 2882672 TTTTTACATAGTATT TAACAA-TGAAGAAAACTTATTTT TTAA AATAAAAGTTTTCTTCATTTGTTA TTACTTAAAATAATG TERM 3860 2882695 - 2882658 - R 79 -8.7 -3.70109 | opp_overlap 2882652 2882658 2882672, overlap 2882667 CATAGTATTTAACAA TGAAGAAAACTTATTTT TTAA AATAAAAGTTTTCTTCA TTTGTTATTACTTAA TERM 3861 2882658 - 2882695 + r 86 -8.7 -4.51994 | opp_overlap 2882658 2882667, overlap 2882652 2882672 CATAGTATTTAACAA TGAAGAAAACTTATTTT TTAA AATAAAAGTTTTCTTCA TTTGTTATTACTTAA CLH_2726 2883842 - 2882739 - | membrane lipoprotein tmpc CLH_2727 2885034 - 2884015 - | transcriptional regulator TERM 3862 2885726 - 2885694 - R 100 -10.1 -6.10489 | opp_overlap 2885694 AATTTCAAAAAAAAA CTGAAGTTATTTAAA TAA TTAAAATAACCTCAG TTTTTCTCAATACTT TERM 3863 2885694 - 2885726 + r 86 -7.9 -4.89339 | opp_overlap 2885694 AATTTCAAAAAAAAA CTGAAGTTATTTAAA TAA TTAAAATAACCTCAG TTTTTCTCAATACTT CLH_2728 2886938 - 2885769 - | aspartate aminotransferase TERM 3864 2886334 - 2886350 + g 76 -6.7 -4.45168 | opp_overlap 2886336 GCATATATCTCATCA GATATAA CAA TTATATC TTTATCTTTTAAAAC CLH_2729 2887414 - 2886935 - | transcriptional regulator, AsnC family TERM 3865 2887195 - 2887209 + g 91 -10 -4.25859 | CATTATCAAAGCCCT CTCCTC TTT GAGGAG TTATTTTAACTTCAA TERM 3866 2887549 - 2887569 + r 73 -2.7 -5.72254 | AACATAGTAAAGTAG TAATGATAT GGC ATATAATTA TTTTTTATTCTTTAG TERM 3867 2887698 - 2887671 - R 100 -10.6 -6.01369 | opp_overlap 2887671 TAAAGAATAAAAAAA TCCCTCATCCCC AACA AGGGACGAAGGA TTAACTACGCGGTAC TERM 3868 2887801 - 2887818 + r 71 -5.7 -4.70659 | opp_overlap 2887804 ACGTCATCATCTAAT TAAGAAT ATCA ATTCTTA TTTTTCAATGTGAAA pulA 2890122 - 2888167 - | pullulanase, type I TERM 3869 2890339 - 2890329 - R 73 -5.4 -4.7373 | opp_overlap 2890329 2890327 TTAGTGTATTAAAAA TGAC CAA GTCA TATTTTTCATATACG CLH_2731 2890593 - 2890480 - | hypothetical protein CLH_2732 2892116 - 2890620 - | sodium/proline symporter CLH_2733 2892355 - 2892642 + | hypothetical protein TERM 3870 2892714 - 2892704 - T 70 -2.6 -5.60993 | TTCTTTATAAAAAAA TAAT CCT ATTA AGTAGTAATTATAAT CLH_2734 2894376 - 2892952 - | arginine/lysine decarboxylase CLH_2735 2895830 - 2894625 - | zinc protease TERM 3871 2895860 - 2895894 + r 79 -3.8 -5.71638 | opp_overlap 2895853 2895860 AAAAGCTATATTAAA TTCAATATAATTTTAA TAA TAAAAGATATATTGAA TTTTTTTAATTATTA TERM 3872 2896156 - 2896133 - R 100 -12.6 -6.01369 | TAAAGAATAAAAAAA CTCGAGTATT AGAT AATACTCGAG TAAAACACATATTAT CLH_2736 2897872 - 2896193 - | hypothetical Methyl-accepting chemotaxis protein TERM 3873 2898192 - 2898150 - R 100 -10.2 -5.86965 | opp_overlap 2898151 2898152, overlap 2898152 ACTTATCAAAAAAAA TAGGACTGTTATATAATAAT ATA ATTACTATATAACAATCCCT TAATTTTTTATTCTG TERM 3874 2898151 - 2898191 + r 73 -7.1 -4.05512 | opp_overlap 2898150 2898152, overlap 2898152 CTTATCAAAAAAAAT AGGACTGTTATATAATAAT ATA ATTACTATATAACAATCCC TTAATTTTTTATTCT TERM 3875 2898190 - 2898152 - R 100 -15 -4.5787 | opp_overlap 2898152 2898151, overlap 2898150 TTATCAAAAAAAATA GGACTGTTATATAATAAT ATA ATTACTATATAACAATCC CTTAATTTTTTATTC TERM 3876 2898152 - 2898190 + r 85 -10.6 -3.00867 | opp_overlap 2898150 2898152, overlap 2898151 TTATCAAAAAAAATA GGACTGTTATATAATAAT ATA ATTACTATATAACAATCC CTTAATTTTTTATTC CLH_2737 2899555 - 2898200 - | heme biosynthesis TERM 3877 2899618 - 2899589 - R 87 -6.5 -5.4387 | opp_overlap 2899591, overlap 2899590 2899591 2899593 ATATAAAGTAAAAAA GTTAGCAGTAACT AAAT AGTTACTGCTATT ACTGCATATTAGTTT TERM 3878 2899617 - 2899590 - R 93 -10 -3.83882 | opp_overlap 2899591, overlap 2899589 2899591 2899593 TATAAAGTAAAAAAG TTAGCAGTAACT AAAT AGTTACTGCTAT TACTGCATATTAGTT TERM 3879 2899591 - 2899616 + r 100 -13.5 -3.22448 | opp_overlap 2899590 2899589 2899591 2899593 ATAAAGTAAAAAAGT TAGCAGTAACT AAAT AGTTACTGCTA TTACTGCATATTAGT TERM 3880 2899616 - 2899591 - R 93 -13.5 -2.88702 | opp_overlap 2899591, overlap 2899590 2899589 2899593 ATAAAGTAAAAAAGT TAGCAGTAACT AAAT AGTTACTGCTA TTACTGCATATTAGT TERM 3881 2899614 - 2899593 - R 90 -11.7 -2.96808 | opp_overlap 2899591, overlap 2899591 2899590 2899589 AAAGTAAAAAAGTTA GCAGTAACT AAAT AGTTACTGC TATTACTGCATATTA CLH_2738 2899764 - 2899627 - | hypothetical protein TERM 3882 2900057 - 2900021 - R 78 -8.1 -3.99553 | opp_overlap 2900027, overlap 2900011 2900027 AATAATATATAATAA TGCAAAGGTACCTGAAA ATT TATCAGGTACCTTTTTA TACATCATATTATCT TERM 3883 2900027 - 2900051 + r 100 -11.5 -4.88736 | opp_overlap 2900021 2900011 2900027 ATATAATAATGCAAA GGTACCTGAAA ATT TATCAGGTACC TTTTTATACATCATA TERM 3884 2900051 - 2900027 - R 100 -11.5 -3.88178 | opp_overlap 2900027, overlap 2900021 2900011 ATATAATAATGCAAA GGTACCTGAAA ATT TATCAGGTACC TTTTTATACATCATA CLH_2739 2902000 - 2900072 - | chaperone protein HtpG CLH_2740 2905743 - 2902201 - | exonuclease SbcC TERM 3885 2904417 - 2904427 + g 78 -2.6 -5.81412 | TTAATTTATTTTTAT TATT GCT AATA TTTTTTTTAAATAAA CLH_2741 2906950 - 2905730 - | DNA repair exonuclease CLH_2742 2907521 - 2906964 - | acetyltransferase, gnat family TERM 3886 2907394 - 2907404 + g 71 -4 -5.05601 | ACATATAATTCCTTA TCAT TTA ATGA TTTTTCTATATACTC TERM 3887 2907423 - 2907433 + g 74 -2.6 -5.58454 | TTCTATATACTCTTG TAAT TCC ATTA TTTTTTTAATATAAC TERM 3888 2907577 - 2907558 - H 73 -2.1 -5.76237 | opp_overlap 2907558 2907567 TATATAAAGAAAAAA CGCAC TAAATATGCT GTGCG TACTTTATATTAATT TERM 3889 2907809 - 2907776 - H 100 -10.6 -6.01369 | opp_overlap 2907776 TAAAGAATAAAAAAA TAGTGTATTGATTT AATAAA AAACCAATACACTA TTTTTTTAGATATTA TERM 3890 2907776 - 2907809 + H 100 -8.4 -5.52909 | opp_overlap 2907776 TAAAGAATAAAAAAA TAGTGTATTGATTT AATAAA AAACCAATACACTA TTTTTTTAGATATTA TERM 3891 2907873 - 2907883 + H 70 -4 -5.19251 | opp_overlap 2907873, overlap 2907879 GTTTTTATTATTGAA CTTT TTT AAAG TTTTTATTCATATTA CLH_2743 2908042 - 2909088 + | integral membrane protein surE 2910039 - 2909284 - | 5',3'-nucleotidase SurE CLH_2745 2910458 - 2912386 + | 2`,3`-cyclic-nucleotide 2`-phosphodiesterase TERM 3892 2912451 - 2912423 - T 100 -10.5 -5.34555 | opp_overlap 2912423 TTATATTATAAAAAA TACTACTGAAATT TAT ATTTTCAGTAGTA TTTTTATACTCATTT TERM 3893 2912423 - 2912451 + T 100 -10.5 -4.95806 | opp_overlap 2912423 TTATATTATAAAAAA TACTACTGAAATT TAT ATTTTCAGTAGTA TTTTTATACTCATTT CLH_2746 2914186 - 2912507 - | methyl-accepting chemotaxis sensory transducer TERM 3894 2914389 - 2914355 - H 75 -6.7 -4.42721 | opp_overlap 2914365 2914387 GAATCATAGAATAAA CTATTTAAAATGATT ATATA AATCACTTTAGATAG TTAAACTATTCATAC TERM 3895 2914980 - 2914968 - g 71 -7.7 -3.6217 | opp_overlap 2914968 AGGGAGCATATAGAA CTTGC AGG GCAAG TTACTGATGCTGCTA CLH_2747 2914644 - 2915282 + | hypothetical protein CLH_2748 2916227 - 2915433 - | phosphatase YidA TERM 3896 2916341 - 2916314 - R 100 -14.4 -5.1287 | opp_overlap 2916316 2916318 2916322 TTTACATCTAAAAAA GAGATAAATGGA TTTA TCCATTTATCTC TCATACTATTATCAA TERM 3897 2916316 - 2916339 + r 85 -11.2 -2.87146 | opp_overlap 2916314, overlap 2916318 2916322 TACATCTAAAAAAGA GATAAATGGA TTTA TCCATTTATC TCTCATACTATTATC CLH_2749 2917358 - 2916381 - | diaminopimelate dehydrogenase CLH_2750 2917754 - 2917623 - | hypothetical protein TERM 3898 2917732 - 2917757 + g 72 -4.9 -4.84353 | opp_overlap 2917732 2917748, overlap 2917742 2917743 AAAGCAATAACAAAA CTAATATTTAT TAAA ATAAACATTAG TTTATTTTAGTTTGT TERM 3899 2917757 - 2917732 - G 85 -7.1 -4.96523 | opp_overlap 2917732 2917742 2917743, overlap 2917748 AAAGCAATAACAAAA CTAATATTTAT TAAA ATAAACATTAG TTTATTTTAGTTTGT TERM 3900 2917742 - 2917767 + g 78 -7.1 -4.46669 | opp_overlap 2917732 2917748, overlap 2917732 2917743 CAAAACTAATATTTA TTAAAATAAAC ATTA GTTTATTTTAG TTTGTTGATTTTCAT TERM 3901 2917743 - 2917766 + g 74 -8.4 -3.26375 | opp_overlap 2917732 2917748, overlap 2917732 2917742 AAAACTAATATTTAT TAAAATAAAC ATTA GTTTATTTTA GTTTGTTGATTTTCA TERM 3902 2917829 - 2917851 + H 77 -8 -4.11183 | opp_overlap 2917828 2917831 2917835, overlap 2917825 GTCTAAACACCTAAT TATTAATTAT TTT ATAATTAATA TTATTTATAATGAAA CLH_2751 2917878 - 2918969 + | sugar kinase, ribokinase family TERM 3903 2918997 - 2919029 + T 87 -7.2 -5.14563 | gap 1, opp_overlap 2918997 ACTTTTCATAAAAAA CCTAATATTG-GTGA TATA TCACACAACATTAGG TTTTTTACTAAAAGA TERM 3904 2919029 - 2918997 - T 100 -9.4 -5.24531 | gap 1, opp_overlap 2918997 ACTTTTCATAAAAAA CCTAATATTG-GTGA TATA TCACACAACATTAGG TTTTTTACTAAAAGA CLH_2752 2920272 - 2919121 - | alcohol dehydrogenase trpF 2921055 - 2920363 - | N-(5'phosphoribosyl)anthranilate isomerase CLH_2754 2922004 - 2921060 - | kinase, pfkB family TERM 3905 2922401 - 2922344 - R 87 -6.8 -5.30199 | gap 1, opp_overlap 2922357 2922362, overlap 2922357 2922362 AAAAATCAATAAAAA TAATACAT-ATAAATAAAATGAGCATC TTTTT GATGCTCATTTTATTAATCATATTCTA CTTTTTTATATTTAT TERM 3906 2922387 - 2922357 - R 100 -14.3 -4.23853 | opp_overlap 2922357 2922362, overlap 2922344 2922362 AATAATACATATAAA TAAAATGAGCATC TTTTT GATGCTCATTTTA TTAATCATATTCTAC TERM 3907 2922357 - 2922387 + r 100 -14.3 -3.29381 | opp_overlap 2922357 2922344 2922362, overlap 2922362 AATAATACATATAAA TAAAATGAGCATC TTTTT GATGCTCATTTTA TTAATCATATTCTAC TERM 3908 2922382 - 2922362 - R 100 -9.8 -5.07523 | opp_overlap 2922357 2922362, overlap 2922357 2922344 TACATATAAATAAAA TGAGCATC TTTTT GATGCTCA TTTTATTAATCATAT TERM 3909 2922362 - 2922382 + r 100 -9.8 -4.74215 | opp_overlap 2922362 2922357 2922344, overlap 2922357 TACATATAAATAAAA TGAGCATC TTTTT GATGCTCA TTTTATTAATCATAT CLH_2755 2923357 - 2922425 - | hypothetical protein CLH_2756 2923978 - 2923394 - | RNA polymerase sigma-70 factor TERM 3910 2924184 - 2924162 - R 72 -6.3 -4.49756 | opp_overlap 2924162, overlap 2924156 2924157 TCTTAAATAGCAAAA GGAGTACCT TTTTC AGCTACTCC TTTCATCGTCTATAT CLH_2757 2924919 - 2924284 - | phosphatase CLH_2758 2925952 - 2924969 - | putative ROK family protein TERM 3911 2925970 - 2925992 + r 80 -9.4 -3.1789 | overlap 2925968 TTCACACCTCCCGCA CTTATTAAAA CTC TTTTAATAAG TCTATTGTAACAATT TERM 3912 2926025 - 2926054 + r 71 -6.8 -4.04206 | opp_overlap 2926028 CCTTTTATATGTCAA TTATAAATAAAA AGTTTC TTTTATTTATAA TTTCTCTCAAAATAA TERM 3913 2926079 - 2926114 + r 73 -5.6 -4.84529 | opp_overlap 2926079 2926082 AAATAAATATAAAAA TAGCCTTAACCAAGTA ATTA TAATTGATTAAGGTTA TTTTTACATTTATCG TERM 3914 2926114 - 2926079 - R 81 -5.6 -5.30448 | opp_overlap 2926079, overlap 2926082 AAATAAATATAAAAA TAGCCTTAACCAAGTA ATTA TAATTGATTAAGGTTA TTTTTACATTTATCG CLH_2759 2926994 - 2926176 - | hypothetical protein CLH_2760 2928663 - 2927206 - | sensory transduction histidine kinase TERM 3915 2928649 - 2928632 - G 72 -5.7 -4.52897 | ATAAGTAATAATAAA GAAAATA TATA TATTTTC TGCCATAACTTCATA CLH_2761 2929325 - 2928669 - | response regulator TERM 3916 2929113 - 2929123 + g 74 -2.6 -5.66868 | TATTACTGGTATATT TAAA TCT TTTA TTTTTTTCATTAATT TERM 3917 2929516 - 2929536 + r 78 -9.7 -3.10343 | opp_overlap 2929508 2929516 AATAAAAGCATAAAA CCGCACC TATTTAT GGTGCGG TTCAATAATAAGTAT TERM 3918 2929536 - 2929516 - R 93 -9.7 -4.71401 | opp_overlap 2929516, overlap 2929508 AATAAAAGCATAAAA CCGCACC TATTTAT GGTGCGG TTCAATAATAAGTAT CLH_2762 2930876 - 2929590 - | extracellular ribonuclease TERM 3919 2931138 - 2931108 - R 100 -10 -4.84359 | opp_overlap 2931091 2931108 2931111, overlap 2931092 TTATTTTTATAAAAA TAAGACTTAATTTT CTT AAAACTAAGCCTTA TCTCTATATAATAAA CLH_2763 2932161 - 2931175 - | D-isomer specific 2-hydroxyacid dehydrogenase family protein CLH_2764 2933240 - 2932209 - | pts system, fructose-specific iibc component CLH_2765 2934163 - 2933363 - | putative regulator of efflux transporter TERM 3920 2933775 - 2933795 + g 70 -5.6 -4.39746 | opp_overlap 2933774 CGCTCATTATAAATT TTTAAAGA AGGTC TCTTTAAA TCTTTTTCTTTTATC TERM 3921 2933842 - 2933861 + g 75 -3.7 -5.39221 | TTATATTTATTTGAG CATTAAT TCCATC ATTAATG TTTTTTAGTTCTTCT CLH_2766 2934605 - 2934489 - | hypothetical protein CLH_2767 2935251 - 2934562 - | radical SAM domain protein CLH_2768 2935813 - 2935238 - | integral membrane protein CLH_2769 2936949 - 2935969 - | nucleoside hydrolase, IUNH family TERM 3922 2936082 - 2936094 + g 72 -6.3 -4.38141 | opp_overlap 2936082 CCACTTCTGTTAATA CCAAA CAA TTTGG TTCTTTTCTATAAAA TERM 3923 2936967 - 2936991 + r 75 -8.9 -3.19289 | opp_overlap 2936981, overlap 2936966 AAAACTCTCCTTGCC TTTTATATTTA AAA TAAATATAAAA CTTTCTATGTTTTCC TERM 3924 2937261 - 2937235 - R 83 -3.1 -6.01369 | gap 1 TAAAGAATAAAAAAA CACCTTGAGTAT ATCC AT-CTCAAAGCG TAAGAAATTAAAGTC TERM 3925 2937347 - 2937328 - R 100 -5.7 -6.23317 | opp_overlap 2937328 ATAAAAATAAAAAAA GTCGCAC TTAACC ATGCGAC TCATTAAATCTTATT TERM 3926 2937405 - 2937426 + r 76 -3 -5.83226 | overlap 2937406 GGTCTTCGAACCTCT CCCACTTT TTTAAT AAAGTGGA TTTTTTTATTAAATT TERM 3927 2937406 - 2937425 + r 71 -6.5 -4.07495 | overlap 2937405 GTCTTCGAACCTCTC CCACTTT TTTAAT AAAGTGG ATTTTTTTATTAAAT CLH_2770 2938368 - 2937487 - | transporter TERM 3928 2938623 - 2938587 - R 93 -9 -4.77036 | opp_overlap 2938587, overlap 2938593 TTGCATTATTAAAAA TAAAAACTGCCGATAA CAATT TTATCAACAGTTTCTA TTTTAATACGTATGA TERM 3929 2938617 - 2938593 - R 86 -5.8 -5.65496 | opp_overlap 2938587, overlap 2938587 TATTAAAAATAAAAA CTGCCGATAA CAATT TTATCAACAG TTTCTATTTTAATAC TERM 3930 2939116 - 2939172 + r 100 -14.5 -5.16132 | gap 1, opp_overlap 2939109 2939116, overlap 2939109 GTCTTAAATCAAAAA TTGATATTATAATGTAAGATTTAATT TATAGT AATTAAG-CTTACATTATAATATCAA TTTTATTTTAATCTA TERM 3931 2939172 - 2939116 - R 100 -12.3 -4.98531 | gap 1, opp_overlap 2939109 2939116, overlap 2939109 GTCTTAAATCAAAAA TTGATATTATAATGTAAGATTTAATT TATAGT AATT-AAGCTTACATTATAATATCAA TTTTATTTTAATCTA nadC 2940019 - 2939180 - | nicotinate-nucleotide diphosphorylase (carboxylating) CLH_2772 2941310 - 2939997 - | L-aspartate oxidase nadA 2942227 - 2941316 - | quinolinate synthetase complex, A subunit CLH_2774 2942548 - 2943090 + | rubredoxin/rubrerythrin CLH_2775 2943231 - 2943548 + | hypothetical protein TERM 3932 2943602 - 2943571 - f 100 -9 -5.72053 | opp_overlap 2943571 TAATTAAATAAAAAA CTTTTAAATTCATT TTTC AATGGATTTAAAAG TTTTTGCTTTTGTTC TERM 3933 2943571 - 2943602 + F 100 -11.2 -5.17786 | opp_overlap 2943571 TAATTAAATAAAAAA CTTTTAAATTCATT TTTC AATGGATTTAAAAG TTTTTGCTTTTGTTC TERM 3934 2944315 - 2944339 + G 71 -8.1 -3.30124 | overlap 2944314 TATACTTGGGTACTT CATAAAAATTA TGA TAATTTTTGTG TTATCGCAAATACAC CLH_2776 2943850 - 2944476 + | hypothetical protein TERM 3935 2944645 - 2944610 - T 100 -13.6 -5.1244 | opp_overlap 2944610 TGATTAACATAAAAA TAAGCTCTAAGCATAA CAAA TTATACTCAGAGCTTA TTTTTATTTATTTAA TERM 3936 2944610 - 2944645 + T 100 -9.2 -5.5454 | opp_overlap 2944610 TGATTAACATAAAAA TAAGCTCTAAGCATAA CAAA TTATACTCAGAGCTTA TTTTTATTTATTTAA CLH_2777 2944870 - 2944697 - | hypothetical protein TERM 3937 2944896 - 2944930 + r 95 -10.3 -4.18782 | opp_overlap 2944894, overlap 2944895 TCCCTTTATAAAGTT TATCAGTAGATAATT TTAAT ACTTATCTACTGATA TTTAATTTAATTTAT feoB 2947086 - 2944942 - | ferrous iron transport protein B TERM 3938 2945323 - 2945335 + g 71 -4.1 -5.07652 | opp_overlap 2945324, overlap 2945324 AAATAATATACCAAA TGTAG CTA CTACG TTTTCTTTTGCCACA CLH_2779 2947380 - 2947159 - | hypothetical protein CLH_2780 2947603 - 2947394 - | hypothetical protein TERM 3939 2947965 - 2948019 + r 100 -16.2 -3.41708 | opp_overlap 2947953 2947970 2947977, overlap 2947953 2947970 2947974 2947977 AAATTTAAAGATACC TTAAATTAATAAGGGATATTAGCTAT ATC ATAGCCAATATCCCTTATTAATTCAC TTAACTTTTACTTAC TERM 3940 2947970 - 2948014 + r 100 -20.5 -3.2352 | opp_overlap 2947970 2947977, overlap 2947965 2947974 2947977 TAAAGATACCTTAAA TTAATAAGGGATATTAGCTAT ATC ATAGCCAATATCCCTTATTAA TTCACTTAACTTTTA TERM 3941 2948014 - 2947970 - R 100 -22.7 -3.67954 | opp_overlap 2947965 2947970 2947974 2947977, overlap 2947977 TAAAGATACCTTAAA TTAATAAGGGATATTAGCTAT ATC ATAGCCAATATCCCTTATTAA TTCACTTAACTTTTA TERM 3942 2947974 - 2948010 + r 100 -16.9 -3.40788 | opp_overlap 2947970 2947977, overlap 2947970 2947965 2947977 GATACCTTAAATTAA TAAGGGATATTAGCTAT ATC ATAGCCAATATCCCTTA TTAATTCACTTAACT TERM 3943 2947977 - 2948007 + r 100 -14.2 -3.83675 | opp_overlap 2947970 2947977, overlap 2947974 2947970 2947965 ACCTTAAATTAATAA GGGATATTAGCTAT ATC ATAGCCAATATCCC TTATTAATTCACTTA TERM 3944 2948007 - 2947977 - R 100 -16.4 -3.89756 | opp_overlap 2947977 2947974 2947970 2947965, overlap 2947970 ACCTTAAATTAATAA GGGATATTAGCTAT ATC ATAGCCAATATCCC TTATTAATTCACTTA CLH_2781 2949361 - 2948027 - | NADH oxidase TERM 3945 2949821 - 2949787 - R 93 -9 -4.74103 | opp_overlap 2949787 TTTTCAATTTAAAAA GATATAAAATTAAT GAAATCG ATTAATTTTATATC TTTTTTGAAATGTAA TERM 3946 2949787 - 2949821 + r 100 -9 -5.07567 | opp_overlap 2949787 TTTTCAATTTAAAAA GATATAAAATTAAT GAAATCG ATTAATTTTATATC TTTTTTGAAATGTAA TERM 3947 2949972 - 2949998 + r 84 -9.6 -3.81154 | opp_overlap 2949970 2949972, overlap 2949974 ATAGACCTTATAATA TCGTACTAACAT TTT ATGTTAGTACTA TTTAATAACTCTTTT TERM 3948 2949998 - 2949972 - R 80 -9.6 -3.24633 | opp_overlap 2949972 2949974, overlap 2949970 ATAGACCTTATAATA TCGTACTAACAT TTT ATGTTAGTACTA TTTAATAACTCTTTT TERM 3949 2949974 - 2949996 + r 95 -12.2 -3.47762 | opp_overlap 2949972 2949970, overlap 2949972 AGACCTTATAATATC GTACTAACAT TTT ATGTTAGTAC TATTTAATAACTCTT CLH_2782 2950606 - 2949977 - | probable hydrolase TERM 3950 2950737 - 2950687 - H 80 -10.2 -2.79492 | opp_overlap 2950687, overlap 2950686 TTCCTAATTTTAAAT TTTTATTATGTATATTTTAAATTC ATG GATTTTTCAATATACATAATAAAA TTGGGTTTCTTTTAT TERM 3951 2950687 - 2950737 + H 87 -10.2 -3.45991 | opp_overlap 2950687 2950686 TTCCTAATTTTAAAT TTTTATTATGTATATTTTAAATTC ATG GATTTTTCAATATACATAATAAAA TTGGGTTTCTTTTAT CLH_2783 2950935 - 2952248 + | radical SAM CLH_2784 2952251 - 2952991 + | hypothetical protein TERM 3952 2953018 - 2952975 - T 95 -12.8 -3.76634 | opp_overlap 2952979 2953017, overlap 2952977 ATTGGAAACACATAA TAGAGGTTAATGACTAAAAT TTAT ATTCTAATCATTAACCTCTC TAGACATTAGATAAT TERM 3953 2953016 - 2952977 - T 100 -15.4 -3.46008 | opp_overlap 2952979, overlap 2952975 TGGAAACACATAATA GAGGTTAATGACTAAAAT TTAT ATTCTAATCATTAACCTC TCTAGACATTAGATA CLH_2785 2955147 - 2953132 - | endopeptidase O TERM 3954 2955226 - 2955194 - R 100 -14.5 -5.42131 | opp_overlap 2955194 TAATTATATAAAAAA CATCTGCTTAATAAT AGC ATTATTAAACAGATG TTTTTTATTTAAGTA TERM 3955 2955194 - 2955226 + r 100 -12.3 -5.65927 | opp_overlap 2955194 TAATTATATAAAAAA CATCTGCTTAATAAT AGC ATTATTAAACAGATG TTTTTTATTTAAGTA CLH_2786 2957076 - 2955385 - | methyl-accepting chemotaxis sensory transducer CLH_2787 2957334 - 2957501 + | hypothetical protein CLH_2788 2957517 - 2957768 + | spore coat protein CotJB CLH_2789 2957783 - 2958346 + | protein cotJC TERM 3956 2958326 - 2958348 + T 70 -2.8 -5.61824 | TTAATGAACGTCCAA GATCATTTGT GTA ATAAATAATC TTTTTTTAAATTTTG TERM 3957 2958460 - 2958485 + T 86 -7.7 -4.79756 | opp_overlap 2958460 AATGAAGTTAAAAAA TCTCTACAG TTTTATTT CTGTAGAGA TTTTTAAGTTATCTA TERM 3958 2958485 - 2958460 - T 93 -7.7 -5.1848 | opp_overlap 2958460 AATGAAGTTAAAAAA TCTCTACAG TTTTATTT CTGTAGAGA TTTTTAAGTTATCTA asrC 2959463 - 2958498 - | sulfite reductase, subunit C asrB 2960270 - 2959476 - | sulfite reductase, subunit B asrA 2961273 - 2960263 - | sulfite reductase, subunit A TERM 3959 2960864 - 2960852 - G 72 -4.9 -4.99638 | ATACTTACACAAAAA CATTT TTC AAATG ACTTTTCACATCCCA CLH_2793 2962055 - 2961288 - | formate/nitrite family of transporter TERM 3960 2962117 - 2962175 + r 70 -4.1 -5.23396 | gap 1, opp_overlap 2962129 2962134, overlap 2962117 2962134 ATTAATCTAAGTATA TATTCTAAAT-AATTAAAGCACCGTGAT TAAT ATCACGGTGCTTTAAAAAATTCAGATAA TTTTTCTTGATTGTT TERM 3961 2962162 - 2962129 - R 100 -19.9 -3.9578 | opp_overlap 2962117 2962117 2962134, overlap 2962134 ATATATTCTAAATAA TTAAAGCACCGTGAT TAAT ATCACGGTGCTTTAA AAAATTCAGATAATT TERM 3962 2962134 - 2962157 + r 100 -15.4 -3.57561 | opp_overlap 2962129 2962134, overlap 2962117 2962117 TTCTAAATAATTAAA GCACCGTGAT TAAT ATCACGGTGC TTTAAAAAATTCAGA TERM 3963 2962157 - 2962134 - R 100 -15.4 -4.14764 | opp_overlap 2962134 2962117 2962117, overlap 2962129 TTCTAAATAATTAAA GCACCGTGAT TAAT ATCACGGTGC TTTAAAAAATTCAGA CLH_2794 2962601 - 2962149 - | transcriptional regulator, Crp/Fnr family CLH_2795 2962624 - 2962866 + | hypothetical protein CLH_2796 2963856 - 2962903 - | periplasmic molybdate-binding protein/domain modA 2964121 - 2964942 + | molybdate ABC transporter, periplasmic molybdate-binding protein TERM 3964 2965129 - 2965144 + G 70 -5.4 -4.57543 | overlap 2965130 ACCATTAATTCTTCC TCCAAC TGTT GTTGGG TTCTTTTTACTTCTT modB 2964965 - 2965648 + | molybdate ABC transporter, permease protein CLH_2799 2965650 - 2966699 + | putrescine transport ATP-binding protein PotG TERM 3965 2966828 - 2966881 + T 71 -5.8 -4.7261 | gap 3, opp_overlap 2966841, overlap 2966836 2966841 TATTTTAAAATTCCT GCACA-TTTA-AAAAGAGGATTCATCA AAA TG-TGAATCCTCTTTTATAGATTATGC TTTATTTTACTAAGT TERM 3966 2966836 - 2966871 + T 79 -10 -2.65206 | gap 1, opp_overlap 2966841, overlap 2966828 2966841 AATTCCTGCACATTT AAAAAGAGGATTCATCA AAA TG-TGAATCCTCTTTTA TAGATTATGCTTTAT TERM 3967 2966866 - 2966841 - T 100 -9.9 -4.70659 | gap 1, opp_overlap 2966836 2966828 2966841 CTGCACATTTAAAAA GAGGATTCATCA AAA TG-TGAATCCTC TTTTATAGATTATGC TERM 3968 2966841 - 2966866 + T 100 -9.9 -4.49337 | gap 1, opp_overlap 2966841, overlap 2966836 2966828 CTGCACATTTAAAAA GAGGATTCATCA AAA TG-TGAATCCTC TTTTATAGATTATGC gltA 2968290 - 2966899 - | glutamate synthase (NADPH), homotetrameric gltD 2969177 - 2968290 - | glutamate synthase, small subunit TERM 3969 2969452 - 2969413 - R 100 -8.2 -5.93252 | GCTAAAAATAAAAAA CTAATTTAATGAAAATTC AAAT AAACTTCCACTAAATTAG TTTTTTTATTATACT smpB 2969959 - 2969489 - | SsrA-binding protein rnr 2972375 - 2970135 - | ribonuclease R TERM 3970 2972130 - 2972115 - G 77 -6.2 -4.7254 | opp_overlap 2972115, overlap 2972117 ATCTGGTATTAAAAA TCCAAA TCCC TTTGGA TGTGCTTGAAGCCTT CLH_2804 2974626 - 2972599 - | V-type H(+)-translocating pyrophosphatase TERM 3971 2973141 - 2973126 - G 73 -5.4 -4.77157 | TTAATGCACCAAAAA GGAATG GTAA CATCCC ACCAATTAAAACTCC TERM 3972 2975057 - 2975098 + r 100 -11.2 -4.44974 | opp_overlap 2975063, overlap 2975062 2975063 2975094 TAATTTGTTTAAAAA TGAAAATAAGGACTACTT CTCATT AAGTAGTCCTTACTTTTA TTTTATAAAGTTTAG TERM 3973 2975062 - 2975093 + r 100 -8.9 -5.18371 | opp_overlap 2975063, overlap 2975057 2975063 TGTTTAAAAATGAAA ATAAGGACTACTT CTCATT AAGTAGTCCTTAC TTTTATTTTATAAAG TERM 3974 2975063 - 2975092 + r 95 -12.4 -3.69938 | opp_overlap 2975063, overlap 2975062 2975057 GTTTAAAAATGAAAA TAAGGACTACTT CTCATT AAGTAGTCCTTA CTTTTATTTTATAAA TERM 3975 2975092 - 2975063 - R 100 -12.4 -4.77757 | opp_overlap 2975063 2975062 2975057 GTTTAAAAATGAAAA TAAGGACTACTT CTCATT AAGTAGTCCTTA CTTTTATTTTATAAA secG 2975329 - 2975096 - | preprotein translocase, SecG subunit TERM 3976 2975578 - 2975528 - R 100 -14.4 -4.39696 | opp_overlap 2975531 2975544, overlap 2975531 2975544 GTTTAAATTAACAAA TTATAAAACTAAAAAACAGCTACA AAT TGCAGCCGTTTTTTAGTTTTGTTA GATGCTATATATCTT TERM 3977 2975575 - 2975531 - R 100 -16.1 -3.16736 | opp_overlap 2975531 2975544, overlap 2975528 2975544 TAAATTAACAAATTA TAAAACTAAAAAACAGCTACA AAT TGCAGCCGTTTTTTAGTTTTG TTAGATGCTATATAT TERM 3978 2975531 - 2975575 + r 100 -13.9 -3.12874 | opp_overlap 2975531 2975528 2975544, overlap 2975544 TAAATTAACAAATTA TAAAACTAAAAAACAGCTACA AAT TGCAGCCGTTTTTTAGTTTTG TTAGATGCTATATAT TERM 3979 2975562 - 2975544 - R 91 -7.4 -5.50313 | opp_overlap 2975531 2975544, overlap 2975531 2975528 TATAAAACTAAAAAA CAGCTACA AAT TGCAGCCG TTTTTTAGTTTTGTT TERM 3980 2975544 - 2975562 + r 70 -3 -5.52347 | opp_overlap 2975544 2975531 2975528, overlap 2975531 TATAAAACTAAAAAA CAGCTACA AAT TGCAGCCG TTTTTTAGTTTTGTT eno 2976905 - 2975610 - | phosphopyruvate hydratase TERM 3981 2976938 - 2976954 + r 75 -6.7 -4.40526 | opp_overlap 2976934 2976937 2976938, overlap 2976934 ATTATATAAAATTAT TTGATAA TAT TTATCAA TTTCATTTTTATATA TERM 3982 2976987 - 2976955 - R 75 -8.8 -3.22894 | opp_overlap 2976954 GATAATATTTATCAA TTTCATTTTTATAT ATAAA ACATAAAAATGAAA AGATTTTTTTAATTA TERM 3983 2977156 - 2977207 + r 90 -4.6 -6.20267 | opp_overlap 2977159 2977160 2977162, overlap 2977162 CATAGCCCAAAATAA AAATTACCGTTAATCTAAATGATT ATAG AATCAGTTAGATTAACGGTTTTAA TTTTTTTATTTTTCA TERM 3984 2977204 - 2977159 - R 100 -10.7 -5.46706 | opp_overlap 2977156 2977162, overlap 2977160 2977162 AGCCCAAAATAAAAA TTACCGTTAATCTAAATGATT ATAG AATCAGTTAGATTAACGGTTT TAATTTTTTTATTTT TERM 3985 2977203 - 2977160 - R 100 -14.2 -3.86397 | opp_overlap 2977156 2977162, overlap 2977159 2977162 GCCCAAAATAAAAAT TACCGTTAATCTAAATGATT ATAG AATCAGTTAGATTAACGGTT TTAATTTTTTTATTT TERM 3986 2977162 - 2977201 + r 100 -16.8 -4.96276 | opp_overlap 2977160 2977159 2977162, overlap 2977156 CCAAAATAAAAATTA CCGTTAATCTAAATGATT ATAG AATCAGTTAGATTAACGG TTTTAATTTTTTTAT TERM 3987 2977201 - 2977162 - R 100 -16.8 -3.50051 | opp_overlap 2977162 2977156, overlap 2977160 2977159 CCAAAATAAAAATTA CCGTTAATCTAAATGATT ATAG AATCAGTTAGATTAACGG TTTTAATTTTTTTAT CLH_2807 2977797 - 2977213 - | hypothetical protein TERM 3988 2978033 - 2978005 - R 83 -6.9 -5.25803 | opp_overlap 2978005 AATTTCTATAAAAAA GAGTCTAGTAA AAATAAA TTACTAAACTC TTTTTCAAACTCATT gpmI 2979589 - 2978051 - | 2,3-bisphosphoglycerate-independent phosphoglycerate mutase TERM 3989 2979670 - 2979680 + r 70 -2.6 -5.51402 | TATTTTTAACCATTT TAAT TAT ATTA TTTTTTTAGATGTAT CLH_2809 2980504 - 2979956 - | viral A-type inclusion protein repeat containing protein CLH_2810 2981205 - 2980603 - | metal dependent phosphohydrolase CLH_2811 2981477 - 2982541 + | methyl-accepting chemotaxis protein TERM 3990 2982635 - 2982614 - T 100 -10.2 -5.72622 | opp_overlap 2982614 TTTATAAAGAAAAAA GGCTATGG TTTAAT CCATAGCC TTTCATTATTCTTAG TERM 3991 2982614 - 2982635 + T 93 -10.2 -4.14945 | opp_overlap 2982614 TTTATAAAGAAAAAA GGCTATGG TTTAAT CCATAGCC TTTCATTATTCTTAG tpiA 2983393 - 2982647 - | triose-phosphate isomerase TERM 3992 2983374 - 2983384 + g 70 -5.4 -4.53607 | ATTTTCCAGTTTCCT GCAA TAA TTGC TTTTCTCATCGTTTT TERM 3993 2983468 - 2983496 + r 86 -7.5 -4.74539 | opp_overlap 2983469 2983476, overlap 2983469 TAATTCTACATAGTA AGGTAAAACTCCT TTA AGAAGTTTTACCC TTTTATTAACTTATT TERM 3994 2983495 - 2983469 - R 100 -13.2 -3.32765 | opp_overlap 2983468 2983469, overlap 2983476 AATTCTACATAGTAA GGTAAAACTCCT TTA AGAAGTTTTACC CTTTTATTAACTTAT TERM 3995 2983469 - 2983495 + r 93 -11 -3.43097 | opp_overlap 2983469 2983476, overlap 2983468 AATTCTACATAGTAA GGTAAAACTCCT TTA AGAAGTTTTACC CTTTTATTAACTTAT pgk 2984707 - 2983517 - | phosphoglycerate kinase TERM 3996 2984785 - 2984751 - R 79 -8.7 -3.68378 | overlap 2984749 CTATATTTTAAAATA GTCTGGCCTTATAGC CTTAT ACTACAAAACCAGAC TTATTTATAATTTTA gap 2985840 - 2984824 - | glyceraldehyde-3-phosphate dehydrogenase, type I CLH_2815 2986944 - 2985913 - | transcription regulator TERM 3997 2987172 - 2987127 - R 75 -8.1 -3.62723 | gap 1, opp_overlap 2987127 2987125 2987131, overlap 2987114 2987123 CATCTAAATAATCAA TTAATATTTAGAG-ATTAAATT TAA ACTTTAACACTCTAAATATTAA TCATTTAATTTTTAA rpoN 2988566 - 2987184 - | RNA polymerase sigma-54 factor TERM 3998 2988630 - 2988612 - R 81 -7.6 -4.43571 | opp_overlap 2988624, overlap 2988626 2988628 ATAAAATCACTAAAA TTCTATAA TAA TTATAGAA ACCCTTTTCTACATA TERM 3999 2988796 - 2988755 - R 93 -9.1 -4.84262 | opp_overlap 2988755 TAATAACTAATAAAA CCATAATTTAAACAACA TTTATACT TTTTGTTTAAATTATGG TTTGTTTAATTTTAC TERM 4000 2988755 - 2988796 + r 89 -9.1 -4.67692 | opp_overlap 2988755 TAATAACTAATAAAA CCATAATTTAAACAACA TTTATACT TTTTGTTTAAATTATGG TTTGTTTAATTTTAC CLH_2817 2989644 - 2988808 - | DegV family protein TERM 4001 2988994 - 2989007 + g 82 -2.5 -5.94713 | TAACTTTGCCTTTTC TAATT CAGC AATTA TTTTTTTTATAGCCT CLH_2818 2990124 - 2989663 - | hypothetical tRNA/rRNA methyltransferase Slr0992 TERM 4002 2990057 - 2990032 - G 83 -9.9 -3.16055 | gap 1, opp_overlap 2990030 2990048 TAAAGGCTTTATTAA GTGTAGCTTACT ATC AGTAAGC-ACAC AAGTTCTTGCTATAT TERM 4003 2990329 - 2990303 - R 100 -8.2 -5.82316 | opp_overlap 2990303 ATTATGCAAAAAAAA TAAAAGGCATTT TAA AAACACCTTTTA TTTTTACTATATTTA CLH_2819 2991881 - 2990370 - | vancomycin B-type resistance protein VanW TERM 4004 2990461 - 2990480 + g 74 -5 -5.02476 | TCTGTAGCTGCTGGT GGAACTAA TGGT TGAGTTCC TTTTTTAACAACTAT TERM 4005 2991461 - 2991479 + g 74 -4.7 -5.1101 | GCTTTTCTTCACCCT TATTCTT TATGT AAGAATA TTTTTTCAATGATGA TERM 4006 2991912 - 2991932 + r 73 -7 -4.03995 | opp_overlap 2991905 2991912, overlap 2991905 2991910 AATAAATATACTGAA TTAGTAGT TTAAT ACTACTAA TATTTTTATAAAAAA TERM 4007 2992070 - 2992037 - R 79 -7 -4.68424 | opp_overlap 2992037 2992035 2992041, overlap 2992041 2992057 2992058 2992061 TAATTCACGTAAAAA TAAAGGTATCTT TCTTAAAATT AAGATACCTTTA TCTTATACTCCATTT CLH_2820 2993047 - 2992106 - | muramidase CLH_2821 2994655 - 2993132 - | two-component sensor kinase CLH_2822 2995355 - 2994645 - | regulatory protein VanR TERM 4008 2995736 - 2995703 - R 100 -10.5 -5.93252 | opp_overlap 2995703 2995705, overlap 2995705 CTTAAAAATAAAAAA CAGAGATAAGCATTT ATAC AAACGCTTACCTCTA TGTTATATGATTATT TERM 4009 2995734 - 2995705 - R 100 -10.9 -4.585 | opp_overlap 2995705 2995703, overlap 2995703 TAAAAATAAAAAACA GAGATAAGCATTT ATAC AAACGCTTACCTC TATGTTATATGATTA ddlB 2996708 - 2995803 - | D-alanine--D-alanine ligase TERM 4010 2997004 - 2996968 - R 84 -9 -4.32046 | opp_overlap 2996971 TTTGTAAAAATTAAA GAACCACTAATAAT AACCTTTAA ATTACTAGTGGTTC TAACTATCTTTTTAT nth 2997642 - 2997016 - | endonuclease III TERM 4011 2997510 - 2997536 + g 70 -7.5 -3.35679 | TAACTTCATTAACCT TTTTATCAGTA GTCTG TGCTGATAAAA TTGTGGCTACCAACA TERM 4012 2997604 - 2997620 + g 70 -6.7 -3.91421 | overlap 2997601 ATCTGGGTAAGTTTC TTTTAGA ATA TCTAAAA TCTTTTGTGTCCTTA CLH_2825 2998365 - 2997661 - | sn-glycerol-3-phosphate acyltransferase CLH_2826 2999413 - 2998412 - | iron-sulfur cluster-binding protein TERM 4013 2998956 - 2998966 + g 80 -4 -5.72622 | opp_overlap 2998956 TCACCTAAGAAAATA TATG ATC CATA TTTTTTATTTATAAG TERM 4014 2999195 - 2999225 + g 74 -8.4 -3.2818 | opp_overlap 2999196, overlap 2999193 2999196 2999203 CTCTGAAGTCAAATA AGGGAAAGCTATAG AAA TTATAGTTTTCCCA TCTTCTAAATATTGA TERM 4015 2999224 - 2999196 - G 84 -9 -4.0098 | opp_overlap 2999196 2999195 2999193 2999203 TCTGAAGTCAAATAA GGGAAAGCTATA GAAAT TATAGTTTTCCC ATCTTCTAAATATTG TERM 4016 2999196 - 2999224 + g 93 -11.9 -2.56426 | opp_overlap 2999196, overlap 2999195 2999193 2999203 TCTGAAGTCAAATAA GGGAAAGCTATAG AAA TTATAGTTTTCCC ATCTTCTAAATATTG cysE 3000009 - 2999425 - | serine O-acetyltransferase cysK 3001034 - 3000123 - | cysteine synthase A TERM 4017 3000826 - 3000845 + g 70 -2.1 -5.52384 | overlap 3000823 GTATTTCCACTTGTT GGTTCAA CTATGA TTGATCC TTTTTTTAATAAACC TERM 4018 3001175 - 3001155 - R 75 -6.9 -4.38141 | opp_overlap 3001160, overlap 3001160 TTTTATATAAAAGAA CAAAATCGC TAA GCGATTTTT TAACCATCCACTCTT TERM 4019 3001170 - 3001160 - R 83 -6.8 -5.12916 | opp_overlap 3001160, overlap 3001155 TATAAAAGAACAAAA TCGC TAA GCGA TTTTTTAACCATCCA TERM 4020 3001160 - 3001170 + r 80 -6.8 -5.03314 | opp_overlap 3001160 3001155 TATAAAAGAACAAAA TCGC TAA GCGA TTTTTTAACCATCCA TERM 4021 3001330 - 3001358 + r 72 -7.5 -3.494 | opp_overlap 3001330 TAAAGAATAAAAAAA CTCCATCTCTATA AAA TATAGAGACGAAG TTATATCCGCGGTTC TERM 4022 3001358 - 3001330 - R 100 -11.9 -6.01369 | opp_overlap 3001330 TAAAGAATAAAAAAA CTCCATCTCTATA AAA TATAGAGACGAAG TTATATCCGCGGTTC CLH_2829 3002938 - 3001688 - | CBS domain/MgtE intracellular domain protein TERM 4023 3004020 - 3004007 - g 77 -5.3 -5.09173 | GAAGATTTTAAAAAA TTAGG ACGT CCTAA ATATGGATTCTTAGT TERM 4024 3005270 - 3005237 - g 100 -7.7 -5.7827 | opp_overlap 3005235 3005237 AATATAAATAAAAAA TTAAATAAGAAACAA TTCC TTGTACCTTATTTAA TGTCTTCTCATCCAG TERM 4025 3005792 - 3005782 - g 71 -4 -5.1361 | AGAAAGCGGAAAAAA TTCT TTA AGAA AAAAATCTAAAAGTA CLH_2830 3003794 - 3005842 + | radical SAM domain protein protein TERM 4026 3005861 - 3005896 + T 100 -17.9 -5.46698 | opp_overlap 3005861 TAACTATATAAAAAA GTACTGATGTTTCTC CCCGTC GAGAAACATCAGTAC TTTTTTAGTTTTCAA TERM 4027 3005896 - 3005861 - T 100 -17.9 -5.42131 | opp_overlap 3005861 TAACTATATAAAAAA GTACTGATGTTTCTC CCCGTC GAGAAACATCAGTAC TTTTTTAGTTTTCAA CLH_2831 3006636 - 3005980 - | hypothetical protein TERM 4028 3006514 - 3006539 + g 74 -2.1 -5.62288 | gap 1, opp_overlap 3006514 3006517, overlap 3006515 3006517 ATGTCTTAATAAAAA TA-ATGTAATTA CAA TAGTTACATATA TTTTTATTTTCTTAG CLH_2832 3007601 - 3006723 - | hypothetical protein TERM 4029 3007668 - 3007681 + H 79 -3.9 -5.69068 | TGTACTTTTAATGTC GATAA TATA TTATC TTTTTTGTATTTTTA pssA 3007820 - 3008341 + | CDP-diacylglycerol--serine O-phosphatidyltransferase TERM 4030 3008396 - 3008344 - T 75 -7.4 -4.287 | gap 1, opp_overlap 3008347 3008349, overlap 3008336 3008349 AAAGAAACTTTAAAA TTAAAGGGTATATTAAAAACTATCT ATCA AG-TAGTTCTTAATATACCCTCTTT TTTATGTTTATTCGT TERM 4031 3008347 - 3008393 + T 100 -9.1 -5.61913 | gap 1, opp_overlap 3008336 3008344 3008349, overlap 3008349 GAAACTTTAAAATTA AAGGGTATATTAAAAACTATCT ATCA AG-TAGTTCTTAATATACCCTC TTTTTTATGTTTATT TERM 4032 3008349 - 3008391 + T 100 -11.7 -4.40478 | gap 1, opp_overlap 3008344 3008349, overlap 3008347 AACTTTAAAATTAAA GGGTATATTAAAAACTATCT ATCA AG-TAGTTCTTAATATACCC TCTTTTTTATGTTTA TERM 4033 3008391 - 3008349 - T 100 -13.9 -4.21408 | gap 1, opp_overlap 3008349 3008347, overlap 3008344 AACTTTAAAATTAAA GGGTATATTAAAAACTATCT ATCA AG-TAGTTCTTAATATACCC TCTTTTTTATGTTTA CLH_2834 3008763 - 3008404 - | hypothetical protein TERM 4034 3009020 - 3009032 + r 73 -3.5 -5.53288 | TACTTTCTTTGCTAC TTATA TTT TATAA TTTTTTTAACTTAAA CLH_2835 3009460 - 3009062 - | hypothetical protein CLH_2836 3010020 - 3009475 - | rubrerythrin TERM 4035 3010206 - 3010171 - R 82 -9.3 -3.39784 | opp_overlap 3010176, overlap 3010176 TTATTTTTAATAAGA TAAAAGGATATAAGA AAAAAA TCTTATATCCTTTTT AGGAATAATTCAACT TERM 4036 3010176 - 3010201 + r 93 -9.2 -4.60889 | opp_overlap 3010171 3010176 TTTAATAAGATAAAA GGATATAAGA AAAAAA TCTTATATCC TTTTTAGGAATAATT TERM 4037 3010201 - 3010176 - R 95 -9.2 -4.79752 | opp_overlap 3010176, overlap 3010171 TTTAATAAGATAAAA GGATATAAGA AAAAAA TCTTATATCC TTTTTAGGAATAATT CLH_2837 3011586 - 3010216 - | stage V sporulation protein R TERM 4038 3010709 - 3010695 - G 71 -8.6 -2.8371 | opp_overlap 3010686 3010682, overlap 3010694 AATAAGGATTTAAAC CTCCTA CAA TAGGAG CTATAACATCATTAT yhbH 3012766 - 3011591 - | sporulation protein YhbH CLH_2839 3014697 - 3012775 - | serine protein kinase TERM 4039 3012938 - 3012952 + g 70 -5 -4.69326 | GACAAATCTTTAACT GAAGCT ATA AGTTTC TTTTCTATTGCATCT TERM 4040 3013964 - 3013944 - G 83 -9.9 -3.21099 | TGCCTCTATTACCAA CATTAAATG CTC CATTTAATG AGAATATTCTTGGAT TERM 4041 3014119 - 3014102 - G 70 -4.9 -4.66609 | gap 1, opp_overlap 3014117 GATCTTACTGAAAAA TCC-GTTG TTT CAACTGGA AATTCTTCATATTTC TERM 4042 3014835 - 3014781 - R 93 -11.9 -3.2029 | opp_overlap 3014790, overlap 3014787 3014790 AATTAATATACTTAA TAAAAATAAGTGAAGTTTAAACTAA TTAAC TTAGCTTAGACTTCACTTTCTTTTA AATACATAGTAATAT TERM 4043 3014829 - 3014787 - R 100 -8.7 -5.12068 | opp_overlap 3014790, overlap 3014781 3014790 TATACTTAATAAAAA TAAGTGAAGTTTAAACTAA TTAAC TTAGCTTAGACTTCACTTT CTTTTAAATACATAG TERM 4044 3014790 - 3014826 + r 100 -10.4 -4.68908 | opp_overlap 3014787 3014781 3014790 ACTTAATAAAAATAA GTGAAGTTTAAACTAA TTAAC TTAGCTTAGACTTCAC TTTCTTTTAAATACA TERM 4045 3014826 - 3014790 - R 100 -10.4 -4.64495 | opp_overlap 3014790, overlap 3014787 3014781 ACTTAATAAAAATAA GTGAAGTTTAAACTAA TTAAC TTAGCTTAGACTTCAC TTTCTTTTAAATACA CLH_2840 3014939 - 3014823 - | hypothetical protein recQ 3016731 - 3014968 - | ATP-dependent DNA helicase RecQ CLH_2842 3017275 - 3016757 - | hypothetical protein CLH_2843 3017680 - 3017279 - | hypothetical protein CLH_2844 3017834 - 3018412 + | hypothetical protein TERM 4046 3018457 - 3018422 - T 79 -3.7 -5.71295 | gap 2, opp_overlap 3018422 ATATAAAAATAAAAA CTTATA-AATGAAT-TG ATAA CACATTCATTGTATAAG TTTTTTTATATTTAA TERM 4047 3018422 - 3018457 + T 83 -3.7 -5.88197 | gap 2, opp_overlap 3018422 ATATAAAAATAAAAA CTTATA-AATGAAT-TG ATAA CACATTCATTGTATAAG TTTTTTTATATTTAA CLH_2845 3020552 - 3018576 - | ABC-type antimicrobial peptide transport system, permease component TERM 4048 3020484 - 3020502 + g 86 -6.1 -5.33026 | opp_overlap 3020484 TGATGCTACAATGTA TGGAAAA TATGT TTTTCCA TTTTTCTTTAAATTA CLH_2846 3021312 - 3020545 - | bacitracin export ATP-binding protein BceA TERM 4049 3021556 - 3021581 + r 74 -8.5 -3.42992 | overlap 3021554 3021560 CTTACATTTCTTCTT TTAATCTTACA TCTG TGTAAGGTTAA TGTATTTCTATATTT CLH_2847 3022594 - 3021578 - | integral membrane sensor signal transduction histidine kinase CLH_2848 3023271 - 3022597 - | two component transcriptional regulator, winged helix family TERM 4050 3023476 - 3023433 - R 100 -8.6 -5.82281 | gap 1, opp_overlap 3023435 3023439 AAATACATAAAAAAA TAAGAACTAGTAATATTAAAT ATA ATTTAAG-TTACTAGTTCCTA TATAAATTATCTATT CLH_2849 3023843 - 3023487 - | hypothetical protein CLH_2850 3024112 - 3024465 + | hypothetical protein CLH_2851 3024984 - 3024571 - | putative transcriptional regulator, MarR family CLH_2852 3025159 - 3025617 + | hypothetical protein CLH_2853 3026390 - 3025800 - | rubrerythrin TERM 4051 3026484 - 3026540 + r 82 -5.6 -5.5353 | gap 2, opp_overlap 3026489, overlap 3026486 3026489 ATATATAAACAAAAT AAAAATGAGCCATCTCAGCTAATAATTT CAA AAATTATTA--TGAGACGGCTCATTCTA TTTTTTATTACTATC TERM 4052 3026486 - 3026538 + r 82 -8.2 -4.39002 | gap 2, opp_overlap 3026489, overlap 3026484 3026489 ATATAAACAAAATAA AAATGAGCCATCTCAGCTAATAATTT CAA AAATTATTA--TGAGACGGCTCATTC TATTTTTTATTACTA TERM 4053 3026489 - 3026535 + r 95 -9.9 -4.27001 | gap 2, opp_overlap 3026489, overlap 3026486 3026484 TAAACAAAATAAAAA TGAGCCATCTCAGCTAATAATTT CAA AAATTATTA--TGAGACGGCTCA TTCTATTTTTTATTA TERM 4054 3026535 - 3026489 - R 100 -12.1 -5.67711 | gap 2, opp_overlap 3026489 3026486 3026484 TAAACAAAATAAAAA TGAGCCATCTCAGCTAATAATTT CAA AAATTATTA--TGAGACGGCTCA TTCTATTTTTTATTA CLH_2854 3027553 - 3026594 - | conserved protein YqhO TERM 4055 3027568 - 3027580 + r 70 -4.9 -4.86385 | TATTTATCATCCCTT CTTAT TAA ATAAG TTTATTTTTGAAGAT TERM 4056 3027710 - 3027689 - R 100 -9.5 -5.4588 | opp_overlap 3027689 TAAAAGTATAAAAAA GCTACACCA AATT TGATGTAGC TTTAAACTTATTTAT TERM 4057 3027689 - 3027710 + r 70 -7.3 -3.74841 | opp_overlap 3027689 TAAAAGTATAAAAAA GCTACACCA AATT TGATGTAGC TTTAAACTTATTTAT thiE 3028408 - 3027776 - | thiamine-phosphate pyrophosphorylase thiM 3029424 - 3028588 - | hydroxyethylthiazole kinase thiD 3030402 - 3029617 - | phosphomethylpyrimidine kinase CLH_2858 3030583 - 3030455 - | hypothetical protein TERM 4058 3030590 - 3030607 + r 79 -9.9 -2.64987 | opp_overlap 3030590 TTTAACCAAAAAAAA TGTAGCC CAAG GGCTACA TAATATAAACTATTT TERM 4059 3030607 - 3030590 - R 100 -9.9 -5.95166 | opp_overlap 3030590 TTTAACCAAAAAAAA TGTAGCC CAAG GGCTACA TAATATAAACTATTT sdaAA 3031744 - 3030866 - | L-serine dehydratase, iron-sulfur-dependent, alpha subunit sdaAB 3032432 - 3031746 - | L-serine dehydratase, iron-sulfur-dependent, beta subunit TERM 4060 3032673 - 3032699 + r 93 -9.7 -4.47873 | opp_overlap 3032673 3032698 GGGGTACGAAAAAAA GATATGTTTTA CAATT TAAAACATATC TTTTATAAATATTAT TERM 4061 3032699 - 3032673 - R 100 -9.7 -5.52384 | opp_overlap 3032673, overlap 3032698 GGGGTACGAAAAAAA GATATGTTTTA CAATT TAAAACATATC TTTTATAAATATTAT CLH_2861 3034363 - 3032717 - | phosphoribulokinase CLH_2862 3034499 - 3035197 + | hypothetical protein CLH_2863 3035197 - 3035577 + | hypothetical protein fba 3035771 - 3036703 + | fructose-1,6-bisphosphate aldolase, class II TERM 4062 3036717 - 3036738 + F 100 -10.2 -5.77677 | opp_overlap 3036717 AATATTTTTTTAAAA GACGAGGT ATAATA ACCTCGTC TTTTTTATTCTTTTA TERM 4063 3036738 - 3036717 - f 93 -10.2 -4.09511 | opp_overlap 3036717 AATATTTTTTTAAAA GACGAGGT ATAATA ACCTCGTC TTTTTTATTCTTTTA argG 3037425 - 3038648 + | argininosuccinate synthase argH 3038651 - 3040048 + | argininosuccinate lyase TERM 4064 3040127 - 3040143 + G 90 -8.7 -4.72007 | opp_overlap 3040127 3040126 3040122 3040128, overlap 3040128 TTCACAAATAGAAAT TGGAGCT ATA AGCTCCG TTTCTTTTGATGGAC TERM 4065 3040142 - 3040128 - g 78 -10 -2.53244 | opp_overlap 3040127 3040128, overlap 3040127 3040126 3040122 TCACAAATAGAAATT GGAGCT ATA AGCTCC GTTTCTTTTGATGGA TERM 4066 3040128 - 3040142 + G 85 -10 -3.42481 | opp_overlap 3040128 3040127 3040126 3040122, overlap 3040127 TCACAAATAGAAATT GGAGCT ATA AGCTCC GTTTCTTTTGATGGA argC 3040041 - 3041075 + | N-acetyl-gamma-glutamyl-phosphate reductase argJ 3041095 - 3042318 + | arginine biosynthesis bifunctional protein ArgJ TERM 4067 3042831 - 3042817 - g 77 -6.4 -4.66953 | CTAATATCTTAAAAA CAGCAT TAA ACGCTG GATATATCCCCGTTG argB 3042351 - 3043205 + | acetylglutamate kinase CLH_2870 3043219 - 3044400 + | acetylornithine aminotransferase argF 3044494 - 3045414 + | ornithine carbamoyltransferase CLH_2872 3045791 - 3047506 + | putative sensory box/ggdef family protein TERM 4068 3047549 - 3047594 + T 82 -5.7 -5.56112 | opp_overlap 3047538 3047549 3047557 ACTATACTTTAAAAA GTAGAAAATGGATAATTAAAA CAAA TTCTAACTATTCACTTTCTAC TTTTTTAATTTTTAT TERM 4069 3047594 - 3047549 - T 100 -10.1 -4.65168 | opp_overlap 3047549, overlap 3047538 3047557 ACTATACTTTAAAAA GTAGAAAATGGATAATTAAAA CAAA TTCTAACTATTCACTTTCTAC TTTTTTAATTTTTAT CLH_2873 3048745 - 3047705 - | hypothetical protein TERM 4070 3048340 - 3048359 + g 80 -8 -4.08974 | opp_overlap 3048339 3048343, overlap 3048343 TTTCATCTATAAACT GAATTTCA TGTG TGAAATTC TTTATGTAATCCAAT CLH_2874 3048922 - 3049482 + | adenylate cyclase TERM 4071 3049489 - 3049525 + T 88 -8.1 -4.75356 | opp_overlap 3049492, overlap 3049492 GGAATTTAAAAAATA AAAGTCCAAGATGTTAA ATA TCATCATCTTGGACTTA TTTTTGGATCTGTTT TERM 4072 3049492 - 3049522 + T 100 -9.8 -4.46215 | opp_overlap 3049492, overlap 3049489 ATTTAAAAAATAAAA GTCCAAGATGTTAA ATA TCATCATCTTGGAC TTATTTTTGGATCTG TERM 4073 3049522 - 3049492 - T 100 -12 -5.43553 | opp_overlap 3049489 3049492 ATTTAAAAAATAAAA GTCCAAGATGTTAA ATA TCATCATCTTGGAC TTATTTTTGGATCTG manA 3050551 - 3049574 - | mannose-6-phosphate isomerase, class I TERM 4074 3050796 - 3050775 - R 91 -8.1 -5.07567 | opp_overlap 3050774 TTATATGTTAAAAAA TGTGAATTC CGAA GAATCCACA CGTTCATTATTTAAC pfkB 3051827 - 3050901 - | 1-phosphofructokinase CLH_2877 3053058 - 3052201 - | class II aldolase, tagatose bisphosphate family TERM 4075 3052304 - 3052324 + g 73 -7.7 -3.78022 | GGATCATTTGCATTT GGGTTATTT TTA AAATAATCC TTTACTGCATCTGAA CLH_2878 3053534 - 3053103 - | PTS system fructose IIA component CLH_2879 3054805 - 3053642 - | AgaS CLH_2880 3055583 - 3054858 - | transcriptional regulator, GntR family TERM 4076 3055823 - 3055778 - R 100 -12.9 -4.00447 | opp_overlap 3055778 3055779, overlap 3055779 AAAATAAATTAATAA CTTCTAAATTTCAGATGGAGC TAAA ACCCCACCTAAAATTTAGAAA TTTCTCTATTGAAAC TERM 4077 3055822 - 3055779 - R 100 -14.2 -2.97828 | opp_overlap 3055778 3055779, overlap 3055778 AAATAAATTAATAAC TTCTAAATTTCAGATGGAGC TAAA ACCCCACCTAAAATTTAGAA ATTTCTCTATTGAAA CLH_2881 3056694 - 3055846 - | PTS system mannose/fructose/sorbose family IID component TERM 4078 3056228 - 3056218 - G 71 -4 -5.1356 | TTTCATTAAGAAAAA TCTT AAG AAGA AATGTAGTGTATTAA CLH_2882 3057451 - 3056684 - | PTS system sorbose-specific iic component CLH_2883 3057987 - 3057511 - | PTS system, mannose/fructose/sorbose family, IIB component CLH_2884 3058670 - 3058128 - | hypothetical protein TERM 4079 3058535 - 3058504 - G 70 -5.2 -4.4634 | overlap 3058508 AATTTTAAGAATAAA CTCATAGCTATAAG TATA CATATAGCTATAGG AGTACTAAATAAAAT nagA 3058847 - 3059986 + | N-acetylglucosamine-6-phosphate deacetylase TERM 4080 3059992 - 3060024 + T 93 -10.9 -3.36452 | opp_overlap 3059992 3059991 ATTTTATTAAAAAAT CATTTTATTTAAGGC TCT GTTTTAAATAAAATG TTGATATTAGGCAAT TERM 4081 3060046 - 3060067 + T 100 -11.7 -5.28683 | opp_overlap 3060046 TTAGGCAATTAAAAA GTGGATATG TTAA CATATCCAC TTTTTTCATATTAAT TERM 4082 3060067 - 3060046 - T 100 -11.7 -4.88407 | opp_overlap 3060046 TTAGGCAATTAAAAA GTGGATATG TTAA CATATCCAC TTTTTTCATATTAAT CLH_2886 3061023 - 3060190 - | prephenate dehydrogenase aroF 3062054 - 3061041 - | phospho-2-dehydro-3-deoxyheptonate aldolase aroK 3062634 - 3062137 - | shikimate kinase aroE 3063460 - 3062648 - | shikimate 5-dehydrogenase CLH_2890 3064626 - 3063484 - | P-protein TERM 4083 3063984 - 3063968 - G 80 -5.9 -5.0133 | overlap 3063970 TACTTCTTTAAAAAA TCTGAAC TTT GTTCAAA CCCTTGAGTATGTGA aroC 3065906 - 3064833 - | chorismate synthase aroA 3067185 - 3065884 - | 3-phosphoshikimate 1-carboxyvinyltransferase aroB 3068325 - 3067273 - | 3-dehydroquinate synthase aroF 3069435 - 3068422 - | phospho-2-dehydro-3-deoxyheptonate aldolase TERM 4084 3069466 - 3069491 + r 82 -10.6 -2.77862 | opp_overlap 3069466, overlap 3069463 3069459 3069468 3069470 ATTTTATATAAAAAA TAGAGCTCAT ATATTA ATGAGCTCTA TAATGTATTCATATA TERM 4085 3069491 - 3069466 - R 100 -10.6 -5.37043 | opp_overlap 3069466 3069463 3069459 3069468 3069470 ATTTTATATAAAAAA TAGAGCTCAT ATATTA ATGAGCTCTA TAATGTATTCATATA TERM 4086 3069468 - 3069489 + r 73 -8.8 -2.92889 | opp_overlap 3069466, overlap 3069466 3069463 3069459 3069470 TTTATATAAAAAATA GAGCTCAT ATATTA ATGAGCTC TATAATGTATTCATA CLH_2895 3071246 - 3069813 - | cardiolipin synthetase TERM 4087 3070063 - 3070074 + g 71 -4.4 -4.93898 | ACCATAGCCTTAGCA TGGA TAAA TCCA TTTTTGTAATAATAT TERM 4088 3071896 - 3071909 + r 75 -3.9 -5.52986 | TTCCAATATATAATT TTATG TATT CATAA TTTTTTTAATAACAT TERM 4089 3071984 - 3071939 - R 82 -8.7 -4.08948 | overlap 3071947 TAATTTCATAAAGAA TAAAAAAATTCTCAAAATCAA TATA TTAATTCCGAGAACTTTCTTA TTATATTTCAATAAA TERM 4090 3071976 - 3071947 - R 95 -5.9 -6.01369 | overlap 3071939 TAAAGAATAAAAAAA TTCTCAAAATCAA TATA TTAATTCCGAGAA CTTTCTTATTATATT putP 3073541 - 3072069 - | sodium/proline symporter TERM 4091 3074072 - 3074102 + H 100 -9.8 -5.63374 | GTACCGCGGAATTTT GCTTTCGTCTCTTA ATT TTAGAGATGAGAGC TTTTTTTAATGTTCA TERM 4092 3076197 - 3076181 - g 70 -3 -5.30686 | overlap 3076193 AAGATGCAGAAAAAA TGCAAT TTAAT ACTGCA ATAGCAAGACTTATG TERM 4093 3076523 - 3076504 - g 90 -5.8 -5.66684 | GAAGGTATAAAAAAA GCTTCATT AGAA AATGAAAC TATAAAAGCAAATAC leuS 3074155 - 3076605 + | leucyl-tRNA synthetase TERM 4094 3076680 - 3076651 - T 100 -10.2 -5.4756 | opp_overlap 3076651 AATTTTAATAAAAAA TAGTAACCCGAA TGTTTT TTCAGGTTACTA TTTTTTCATCCTCAA TERM 4095 3076651 - 3076680 + T 93 -8 -5.1861 | opp_overlap 3076651 AATTTTAATAAAAAA TAGTAACCCGAA TGTTTT TTCAGGTTACTA TTTTTTCATCCTCAA TERM 4096 3076803 - 3076860 + T 75 -9.5 -2.69725 | gap 1, opp_overlap 3076803 3076816, overlap 3076803 3076816 AACTCTTAATAAAGA TTTGTTGAATTAATGCTTGT-CCTAATG TTT CATTGGGAACATGCATTAATTAGACTAA GCTTTATTTTTAGAG CLH_2898 3079056 - 3076951 - | methyl-accepting chemotaxis sensory transducer CLH_2899 3079853 - 3079119 - | maltose transacetylase TERM 4097 3080125 - 3080104 - R 100 -8.1 -5.72622 | CTTACAAATAAAAAA GTATCTATG AATT CATAGACAC CAAAATTAAAATTAT TERM 4098 3080528 - 3080487 - R 95 -6.1 -6.11229 | opp_overlap 3080480 ATTAAAATAAAAAAA TCTATGTATACTTAATGTT TTTT ATCATAAAATATACACAGA TTTTTTATAGTCTTA CLH_2900 3081301 - 3080546 - | hypothetical protein CLH_2901 3081558 - 3081887 + | HesB family protein TERM 4099 3081923 - 3081897 - T 100 -14 -3.70033 | opp_overlap 3081897, overlap 3081902 CACTAATATATACAA TACAACTACTTA ATT TAAGTAGTTGTA TTTTTTTATTTACTT TERM 4100 3081897 - 3081923 + T 100 -14 -6.01187 | opp_overlap 3081897 3081902 CACTAATATATACAA TACAACTACTTA ATT TAAGTAGTTGTA TTTTTTTATTTACTT TERM 4101 3081918 - 3081902 - T 76 -8.1 -3.82664 | opp_overlap 3081897, overlap 3081897 ATATATACAATACAA CTACTTA ATT TAAGTAG TTGTATTTTTTTATT CLH_2902 3082624 - 3081929 - | putative reticulocyte-binding protein TERM 4102 3082050 - 3082062 + g 72 -3.5 -5.24647 | ATATCAATCCAATAG TTATT CAT AATAA TTTTCTTTTCTCTAT CLH_2903 3084009 - 3082678 - | hypothetical protein TERM 4103 3083910 - 3083898 - G 70 -6.3 -4.07604 | overlap 3083889 ACAAATCAAGAATAA CTTGT TCA ACAAG TTCAAAAAAACTCTT CLH_2904 3085213 - 3084125 - | ATPase family protein CLH_2905 3086247 - 3085468 - | hypothetical protein TERM 4104 3086283 - 3086325 + r 100 -22.6 -3.9467 | opp_overlap 3086290, overlap 3086290 TAAAATTTTACCTAT TATTAAAGCTATGTTTGATA TAC TATCAAACATAGCTTTAATA TTATTCTCTATACTT TERM 4105 3086290 - 3086318 + r 100 -16.3 -4.02742 | opp_overlap 3086290, overlap 3086283 TTACCTATTATTAAA GCTATGTTTGATA TAC TATCAAACATAGC TTTAATATTATTCTC TERM 4106 3086318 - 3086290 - R 100 -16.3 -3.79747 | opp_overlap 3086290 3086283 TTACCTATTATTAAA GCTATGTTTGATA TAC TATCAAACATAGC TTTAATATTATTCTC CLH_2906 3087117 - 3086326 - | RelA/spoT family protein TERM 4107 3086586 - 3086576 - G 74 -6.8 -4.28774 | TCATCTAATTTAAAA GCTG CAT CAGC TGAACTTTTAAGTTT TERM 4108 3087365 - 3087345 - g 71 -2.7 -5.46129 | overlap 3087347 GAAGAAATTAAAAAA CATTTATTT CTA AAACAAATA CATTGTCCTGTATGT CLH_2907 3087321 - 3088001 + | hypothetical protein TERM 4109 3088295 - 3088272 - g 73 -5.4 -4.74653 | AAATCAAGAAACAAA TCATGCAACA AATC TATTACATGA TTTTAGATCTAATAT CLH_2908 3088048 - 3089013 + | putative methyl-accepting chemotaxis protein TERM 4110 3089087 - 3089126 + T 77 -4.7 -5.31855 | opp_overlap 3089087 3089079, overlap 3089079 AAATAAATAATAAAA GCATAAAAA-GATGTATGA TATG TTA-ACATCCTTTTTATGC TTTTTATTATTAATG CLH_2909 3091304 - 3089211 - | spore cortex-lytic enzyme, pre-pro-form TERM 4111 3091333 - 3091382 + r 100 -19.9 -3.64609 | opp_overlap 3091342, overlap 3091332 TAAGATTATTCCTAC TTATATTAAGTTATACACCATAT ATAT AAATGGTGTATAACTTAATATAA TTTAAAATAATTCTA TERM 4112 3091373 - 3091342 - R 93 -11.8 -3.2794 | opp_overlap 3091333 TCCTACTTATATTAA GTTATACACCATAT ATAT AAATGGTGTATAAC TTAATATAATTTAAA TERM 4113 3091571 - 3091598 + r 100 -13 -4.41114 | opp_overlap 3091571 CTAGACACAAAAAAA GATGTTGAAAAA ATAT TTTTTCAACATC TTTATTCTATAATCA TERM 4114 3091598 - 3091571 - R 100 -13 -5.76633 | opp_overlap 3091571 CTAGACACAAAAAAA GATGTTGAAAAA ATAT TTTTTCAACATC TTTATTCTATAATCA CLH_2910 3092292 - 3091600 - | Ser/Thr protein phosphatase family protein TERM 4115 3091955 - 3091978 + g 75 -7 -4.10855 | opp_overlap 3091958, overlap 3091958 GTACCACAAATGGCA TAATTTTTAT AAAC ATAAAAATTA TTTTGAAGAAATTTT CLH_2911 3092583 - 3092323 - | flagella-associated protein CLH_2912 3094514 - 3092631 - | hypothetical protein TERM 4116 3093987 - 3094014 + g 70 -8.6 -2.64536 | opp_overlap 3093993, overlap 3093993 3093995 TACAAGATTTTGTTT TATAAATTCTCC TTTA GGAGTATTTATA TCAATTCCTTTGCTT TERM 4117 3094715 - 3094704 - R 73 -5.8 -4.86902 | opp_overlap 3094703 3094704 CAAATTAGAACAAAA TCGC TAAG GCGA ATTTAGATCCATCGA TERM 4118 3094933 - 3094905 - R 100 -12 -5.49729 | opp_overlap 3094895 3094905 AATTACCTAAAAAAA TAGGATTTGAAA TAATT TTTCAAATCCTA TTTTTTAATTACAAT TERM 4119 3094905 - 3094933 + r 100 -12 -5.27477 | opp_overlap 3094905, overlap 3094895 AATTACCTAAAAAAA TAGGATTTGAAA TAATT TTTCAAATCCTA TTTTTTAATTACAAT tyrS 3096195 - 3094975 - | tyrosyl-tRNA synthetase TERM 4120 3095252 - 3095265 + g 74 -3.8 -5.2166 | GAGAATAAAGCATTA GCAG CTTCTT CTGC TTTTTTAGCTTCTTC TERM 4121 3096426 - 3096471 + r 73 -7.8 -3.69621 | opp_overlap 3096424 3096428 3096460, overlap 3096428 3096460 AAATTATATTAAATT AATGCCCTAAAATCTCTG ACTTAAATAA CAGAGATTTTAGAGCATC TTTAAAATTATACCT TERM 4122 3096428 - 3096469 + r 90 -10.4 -3.4268 | opp_overlap 3096428 3096424 3096460, overlap 3096426 3096460 ATTATATTAAATTAA TGCCCTAAAATCTCTG ACTTAAATAA CAGAGATTTTAGAGCA TCTTTAAAATTATAC TERM 4123 3096469 - 3096428 - R 95 -12.6 -3.59803 | opp_overlap 3096426 3096428 3096460, overlap 3096424 3096460 ATTATATTAAATTAA TGCCCTAAAATCTCTG ACTTAAATAA CAGAGATTTTAGAGCA TCTTTAAAATTATAC CLH_2914 3097642 - 3096524 - | spore germination protein TERM 4124 3097396 - 3097410 + g 72 -5 -4.86621 | opp_overlap 3097398, overlap 3097398 TATTAACATCTCTAA TAGCTT CTA AAGCTG TTTTTCCTTCACCCT CLH_2915 3099038 - 3097632 - | spore germination protein TERM 4125 3098574 - 3098592 + g 70 -3.2 -5.24003 | overlap 3098568 TCCAACATATAAAGG TTCAAATT TTA AATCTGAA TTTTTAATTTTTCTT CLH_2916 3099218 - 3100315 + | spore germination protein TERM 4126 3100379 - 3100329 - T 100 -13.9 -3.51976 | gap 1, opp_overlap 3100342, overlap 3100330 3100342 AAGGTCTTAAATTAA TCATAAATAAAAATCGGATAATAA ATAT TTATTATCCGATTTTTATTT-TGC AATATAATAGTTTTA TERM 4127 3100378 - 3100330 - T 100 -17.4 -2.70704 | gap 1, opp_overlap 3100342, overlap 3100329 3100342 AGGTCTTAAATTAAT CATAAATAAAAATCGGATAATAA ATAT TTATTATCCGATTTTTATTT-TG CAATATAATAGTTTT TERM 4128 3100367 - 3100342 - T 100 -12.1 -5.4182 | opp_overlap 3100342, overlap 3100330 3100329 AATCATAAATAAAAA TCGGATAATAA ATAT TTATTATCCGA TTTTTATTTTGCAAT TERM 4129 3100342 - 3100367 + T 100 -12.1 -5.46706 | opp_overlap 3100342 3100330 3100329 AATCATAAATAAAAA TCGGATAATAA ATAT TTATTATCCGA TTTTTATTTTGCAAT CLH_2917 3101144 - 3100596 - | membrane spanning protein TERM 4130 3101111 - 3101125 + g 72 -5.8 -4.59424 | overlap 3101120 CCATTAACACTAGTT CTTTAA CAT TTAAAG TTTTACTTTCACTTT trpS 3101413 - 3102423 + | tryptophanyl-tRNA synthetase CLH_2919 3104656 - 3102644 - | putative membrane-associated methyl-accepting chemotaxis protein fused to hamp domain TERM 4131 3104284 - 3104294 + g 71 -2.6 -5.55664 | opp_overlap 3104284 CATGGGGATACATAA TAAA ATC TTTA TTTTTTTCATCATAA CLH_2920 3104765 - 3104646 - | hypothetical protein TERM 4132 3104687 - 3104703 + g 70 -5.3 -4.56597 | opp_overlap 3104687 CATATTTTAAATTTA TATAAAT TAT ATTTATA TTTTTAGAAAAACGA TERM 4133 3104791 - 3104818 + r 84 -5.2 -5.64873 | gap 1, opp_overlap 3104808 3104814, overlap 3104794 3104811 ATCGGTATTATTGAC TATTTCTTAATAA TAA TTATTAAG-AATA TTTTTTATTCTTCAA TERM 4134 3104794 - 3104816 + r 93 -9.4 -4.45127 | opp_overlap 3104808 3104814, overlap 3104791 3104811 GGTATTATTGACTAT TTCTTAATAA TAA TTATTAAGAA TATTTTTTATTCTTC galU 3105787 - 3104915 - | UTP-glucose-1-phosphate uridylyltransferase TERM 4135 3105280 - 3105293 + g 73 -5.3 -4.81212 | GTCCATCAACAATTC CGTAT TTTG ATACG TTTTCTTCTGCTACA TERM 4136 3105459 - 3105472 + g 70 -5.3 -4.59846 | overlap 3105457 CAATGAATTGCATGA CCTAA ACCT TTAGG TTCTTTTTGTCTAAT brnQ 3106132 - 3107403 + | branched-chain amino acid transport system II carrier protein TERM 4137 3107412 - 3107456 + T 70 -4 -5.1287 | gap 2, opp_overlap 3107418, overlap 3107414 3107418 AGTATAAGGACTTAA AATA-AAGTGGCCAATATT-TA AAT TACAATATTGGTCACTTATATA TTTTTTCAATATGAA TERM 4138 3107414 - 3107454 + T 71 -6.6 -4.19215 | gap 2, opp_overlap 3107418, overlap 3107412 3107418 TATAAGGACTTAAAA TA-AAGTGGCCAATATT-TA AAT TACAATATTGGTCACTTATA TATTTTTTCAATATG TERM 4139 3107418 - 3107449 + T 81 -9 -3.94368 | gap 1, opp_overlap 3107418, overlap 3107414 3107412 AGGACTTAAAATAAA GTGGCCAATATT-TA AAT TACAATATTGGTCAC TTATATATTTTTTCA TERM 4140 3107449 - 3107418 - T 77 -6.8 -4.6951 | gap 1, opp_overlap 3107414 3107412 3107418 AGGACTTAAAATAAA GTGGCCAATATT-TA AAT TACAATATTGGTCAC TTATATATTTTTTCA TERM 4141 3107575 - 3107540 - T 100 -20.8 -4.7497 | opp_overlap 3107540, overlap 3107545 TTTATTTATTAAAAA GAAAATGCAGAAGGAA AAAA TTCCTTCTGCATTTTC TTTTTATTATTTTCT TERM 4142 3107540 - 3107575 + T 100 -20.8 -5.47964 | opp_overlap 3107540 3107545 TTTATTTATTAAAAA GAAAATGCAGAAGGAA AAAA TTCCTTCTGCATTTTC TTTTTATTATTTTCT TERM 4143 3107570 - 3107545 - T 100 -14.9 -5.3104 | opp_overlap 3107540, overlap 3107540 TTATTAAAAAGAAAA TGCAGAAGGAA AAAA TTCCTTCTGCA TTTTCTTTTTATTAT CLH_2923 3108685 - 3107582 - | lipopolysaccharide biosynthesis protein TERM 4144 3108760 - 3108780 + r 85 -9.9 -3.17238 | opp_overlap 3108765, overlap 3108765 GTTGAAAATTTTACT TAAAAGTCT TAA AGACTTTTA TTAAATATATACTCT TERM 4145 3108765 - 3108775 + r 71 -5.4 -4.70772 | opp_overlap 3108765, overlap 3108760 AAATTTTACTTAAAA GTCT TAA AGAC TTTTATTAAATATAT pglB 3109518 - 3108913 - | bacterial sugar transferase CLH_2925 3110890 - 3109664 - | WblI protein TERM 4146 3111176 - 3111133 - R 100 -7.1 -6.01369 | opp_overlap 3111133, overlap 3111122 TAAAGAATAAAAAAA TTCTATTCAATTAACATAT TAACTT ATGCATTAATTGAATAGAA TTTCATTATATACTA CLH_2926 3112482 - 3111235 - | amylovoran biosynthesis AmsK CLH_2927 3112698 - 3113762 + | UDP-N-acetylglucosamine 2-epimerase TERM 4147 3113791 - 3113763 - T 100 -13.3 -3.95036 | opp_overlap 3113769, overlap 3113769 AATTATGTGAAATAA TAAAAAGGACTGC AAT GCAGTCCTTTTTT TGATATTATATTCTA TERM 4148 3113769 - 3113785 + T 100 -12.3 -5.6473 | opp_overlap 3113769 3113763 GTGAAATAATAAAAA GGACTGC AAT GCAGTCC TTTTTTTGATATTAT TERM 4149 3113785 - 3113769 - T 100 -12.3 -5.38549 | opp_overlap 3113769, overlap 3113763 GTGAAATAATAAAAA GGACTGC AAT GCAGTCC TTTTTTTGATATTAT CLH_2928 3115294 - 3113804 - | hypothetical protein CLH_2929 3117159 - 3115297 - | Cap5D TERM 4150 3115473 - 3115460 - G 72 -6.7 -4.13014 | opp_overlap 3115460 3115459 TCCATATCTTCAAAA GTTGG TTTT CCAAC ATATATCTTTTGATG CLH_2930 3118207 - 3117224 - | glycosyltransferase involved in cell wall biogenesis CLH_2931 3119320 - 3118442 - | LicD family protein CLH_2932 3119711 - 3120718 + | minor teichoic acid biosynthesis protein GgaB TERM 4151 3120828 - 3120883 + T 100 -16 -2.86308 | opp_overlap 3120828, overlap 3120834 TAAAATATAAATAAA TTAAGAGAAGTTATCTATGAATACTT TTAA AATTATTCCTAGATAACTTCTTTTAA TAATATATTTATTCT TERM 4152 3120883 - 3120828 - T 100 -13.8 -4.77047 | opp_overlap 3120828 3120834 TAAAATATAAATAAA TTAAGAGAAGTTATCTATGAATACTT TTAA AATTATTCCTAGATAACTTCTTTTAA TAATATATTTATTCT TERM 4153 3120834 - 3120877 + T 100 -12.8 -4.34947 | opp_overlap 3120828, overlap 3120828 ATAAATAAATTAAGA GAAGTTATCTATGAATACTT TTAA AATTATTCCTAGATAACTTC TTTTAATAATATATT CLH_2933 3121927 - 3121016 - | sugar ABC transporter, permease protein CLH_2934 3123074 - 3122187 - | ABC transporter, permease protein TERM 4154 3122988 - 3122975 - G 73 -5.3 -4.71382 | ATAATGATTTAAAAA TTGGA ACTA TCCAA AATACTATAAGCGGA CLH_2935 3124655 - 3123336 - | putative glycerol-3-phosphate ABC transporter TERM 4155 3124811 - 3124788 - R 100 -9 -6.11644 | opp_overlap 3124788, overlap 3124764 TTATGCAAAAAAAAA TGCAAACTAA AATT CTAGTTTGCA TTTTCATATAACCTC TERM 4156 3124788 - 3124811 + r 80 -8.3 -4.35116 | opp_overlap 3124764 3124788 TTATGCAAAAAAAAA TGCAAACTA AAATTC TAGTTTGCA TTTTCATATAACCTC CLH_2936 3125710 - 3124844 - | hydrolase, Cof family CLH_2937 3127770 - 3125764 - | putative signaling protein TERM 4157 3126555 - 3126571 + g 78 -8.1 -3.91983 | opp_overlap 3126554 TATGATTCCAATTAT CAGAATA ACT TATTCTG TCTTTATTTATATCC TERM 4158 3128235 - 3128179 - R 100 -16.6 -2.93207 | opp_overlap 3128205, overlap 3128182 3128196 AATAGTAGCTACATA TTATTATTTTTTAGTAATTTATACTC TTTAT GAATATAAATTACTAAAAAATAAAAA AAGAAAATCTTTAGG TERM 4159 3128232 - 3128182 - R 100 -18.3 -2.70528 | opp_overlap 3128205, overlap 3128179 3128196 AGTAGCTACATATTA TTATTTTTTAGTAATTTATACTC TTTAT GAATATAAATTACTAAAAAATAA AAAAAGAAAATCTTT TERM 4160 3128285 - 3128238 - R 82 -2.2 -6.28401 | gap 1, opp_overlap 3128238 TAAAAAATAAAAAAA GAAAATCTTTAGGTGATCTCATA TTT TTTTATTTCACCTAA-GATTTTC TTATACAATAATTAT CLH_2938 3129304 - 3128333 - | integral membrane protein domain protein TERM 4161 3129743 - 3129718 - R 100 -9.9 -5.86061 | opp_overlap 3129718 3129717 3129720 TTTCAGTAAAAAAAA GAGTAAAGTTA TTAA TAACTCTACTC ATCTTTCATTATGTC CLH_2939 3130553 - 3129846 - | cell wall binding repeat domain protein TERM 4162 3130768 - 3130729 - R 85 -11 -2.82449 | opp_overlap 3130734 3130765, overlap 3130734 GTTTATTAATAGAAC TAAAAGCGTGAAATTTAA ACAA TAAAATTTCACGCTTTTT TAATTTAGAAATTAT TERM 4163 3130734 - 3130763 + r 100 -10.9 -5.37593 | opp_overlap 3130729 3130734 TTAATAGAACTAAAA GCGTGAAATTTAA ACAA TAAAATTTCACGC TTTTTTAATTTAGAA TERM 4164 3130763 - 3130734 - R 100 -10.9 -4.56314 | opp_overlap 3130734, overlap 3130729 TTAATAGAACTAAAA GCGTGAAATTTAA ACAA TAAAATTTCACGC TTTTTTAATTTAGAA CLH_2940 3132405 - 3130939 - | polysaccharide biosynthesis protein TERM 4165 3132168 - 3132151 - G 71 -4.2 -5.16151 | TAAAGTGAATAAAAA CAAACT GGTAAA AGTTTG TTGGAGTTTCTCTTC TERM 4166 3132557 - 3132599 + r 93 -11 -3.43246 | opp_overlap 3132554 3132563 3132569 3132571, overlap 3132560 3132563 3132569 GATTTTTTGAAATTT TTATAAGATAAATACATATT TTA AATATGCATTTATCTTATAC TTAGCTTATTTTTTA TERM 4167 3132560 - 3132596 + r 91 -12.7 -2.83642 | opp_overlap 3132554 3132563 3132569 3132571, overlap 3132557 3132563 3132569 TTTTTGAAATTTTTA TAAGATAAATACATATT TTA AATATGCATTTATCTTA TACTTAGCTTATTTT TERM 4168 3132563 - 3132593 + r 89 -10 -3.54511 | opp_overlap 3132563 3132554 3132569 3132571, overlap 3132560 3132557 3132569 TTGAAATTTTTATAA GATAAATACATATT TTA AATATGCATTTATC TTATACTTAGCTTAT TERM 4169 3132593 - 3132563 - R 95 -12.2 -3.3506 | opp_overlap 3132560 3132557 3132563 3132569, overlap 3132554 3132569 3132571 TTGAAATTTTTATAA GATAAATACATATT TTA AATATGCATTTATC TTATACTTAGCTTAT CLH_2941 3133287 - 3132589 - | LicC protein TERM 4170 3132998 - 3132965 - G 77 -5.5 -5.09225 | opp_overlap 3132965 ACTTTAGGTAAAAAA TTGTTATTGATATAA TTAT CTGCATCAATAACAA ATGTATCTTTAAGAT CLH_2942 3135161 - 3133302 - | choline/ethanolamine kinase family protein TERM 4171 3133989 - 3134007 + g 71 -2.4 -5.39755 | TCTTTCTGAAGCAAT TGAAGAGT TAA ACATTTCA TTTTTTCTACTTATC TERM 4172 3135416 - 3135400 - R 72 -8.1 -3.15379 | overlap 3135398 ACACAATTGAACATA CAGAATT TAG AATTCTG CCAAAACATATACTT TERM 4173 3135516 - 3135530 + r 70 -7.2 -3.81259 | opp_overlap 3135524 ATAACCGCAATCTCT GTTCAT AAT ATGAAC TTTAATAAATTATAT TERM 4174 3135723 - 3135681 - R 100 -11.7 -5.46657 | opp_overlap 3135684, overlap 3135684 TAGTCTAATAAAAAA TAAGCTATATTTTAAGTTA AATTG CAACTTAAAATATAGCTTT AATTATTATATTAAT TERM 4175 3135720 - 3135684 - R 100 -13.4 -4.81306 | opp_overlap 3135684, overlap 3135681 TCTAATAAAAAATAA GCTATATTTTAAGTTA AATTG CAACTTAAAATATAGC TTTAATTATTATATT TERM 4176 3135684 - 3135720 + r 100 -12.7 -4.14175 | opp_overlap 3135681 3135684 TCTAATAAAAAATAA GCTATATTTTAAGTT AAATTGC AACTTAAAATATAGC TTTAATTATTATATT CLH_2943 3136414 - 3135869 - | hypothetical protein CLH_2944 3137405 - 3136782 - | hypothetical protein TERM 4177 3137651 - 3137681 + r 73 -4.2 -5.1764 | opp_overlap 3137651 TAATGTATAAAAAAA TGAGATGATT CCTTTATATAT AATCATCTCA TTTTTATCTTATATA TERM 4178 3137681 - 3137651 - R 84 -4.8 -5.66684 | opp_overlap 3137651 TAATGTATAAAAAAA TGAGATGATTCCTT TAT ATATAATCATCTCA TTTTTATCTTATATA CLH_2945 3140685 - 3137701 - | putative collagenolytic protease TERM 4179 3139230 - 3139247 + g 70 -8.5 -2.52015 | overlap 3139229 ATAATGCGCCTAATT GTTCTGA TGAC TCAGAAC CTTCATAAATATCCA TERM 4180 3141094 - 3141119 + r 78 -6.1 -4.91357 | opp_overlap 3141099, overlap 3141099 ATAATTTCATAAAGA AAAAAGGAGGC ATAT GCCTCCTTTAA TTTTATTATCTATTT TERM 4181 3141099 - 3141114 + r 95 -10.4 -4.35361 | opp_overlap 3141099, overlap 3141094 TTCATAAAGAAAAAA GGAGGC ATAT GCCTCC TTTAATTTTATTATC TERM 4182 3141114 - 3141099 - R 100 -10.4 -5.72622 | opp_overlap 3141099 3141094 TTCATAAAGAAAAAA GGAGGC ATAT GCCTCC TTTAATTTTATTATC CLH_2946 3143191 - 3141134 - | surface protein PspC TERM 4183 3142483 - 3142495 + g 75 -5.5 -4.98103 | CTTCCTCATCAGAGC CTGGA CCA TCCGG TTTTGTGTTTTCTTC TERM 4184 3143361 - 3143387 + r 76 -4.6 -5.42265 | opp_overlap 3143369 TCTAAAGCCTTTATT CTACTTAATTAT ACT ATAATTAGCTAG TTTTTTATGGTTTCA TERM 4185 3143467 - 3143419 - R 100 -9.4 -5.36441 | gap 1, opp_overlap 3143435 3143447 3143448 3143453, overlap 3143427 3143447 TTTCCATAGAAAAAA TAAAAAAATCTTCCACTTAAACA TTAA TGTT-AAGTAAAAGATTCTTTTA TTTAAATTCTCTTAT TERM 4186 3143459 - 3143427 - R 90 -4.4 -6.28401 | gap 1, opp_overlap 3143435 3143447 3143448 3143453, overlap 3143419 3143447 GAAAAAATAAAAAAA TCTTCCACTTAAACA TTAA TGTT-AAGTAAAAGA TTCTTTTATTTAAAT TERM 4187 3143448 - 3143472 + r 71 -8.1 -2.97739 | opp_overlap 3143427 3143419 3143447, overlap 3143447 3143453 ACTTAAACATTAATG TTAAGTAAAAG ATT CTTTTATTTAA ATTCTCTTATTTTGT CLH_2947 3145705 - 3143492 - | surface protein PspC CLH_2948 3146051 - 3146320 + | putative anaerobic ribonucleoside-triphosphate reductase CLH_2949 3146575 - 3147402 + | phosphatase YidA TERM 4188 3147486 - 3147516 + F 95 -10 -4.36854 | opp_overlap 3147486 CTCAAAATAAAAAAA TGTAATAAACGTAT CTT ATACCTTTATTACA TTTATATTATCTTTA TERM 4189 3147516 - 3147486 - f 100 -10 -6.09196 | opp_overlap 3147486 CTCAAAATAAAAAAA TGTAATAAACGTAT CTT ATACCTTTATTACA TTTATATTATCTTTA TERM 4190 3147633 - 3147684 + F 81 -8.7 -3.91084 | gap 1, opp_overlap 3147637 3147665, overlap 3147637 3147638 TAAAATTTTTTAATA T-TAACTTTTATAAATAAAATTAT TTAAT AGAATTTTATTTATAAAAGTTACA TTTGATTCGAGGTGA TERM 4191 3147637 - 3147679 + F 93 -11.1 -3.33399 | opp_overlap 3147637 3147665, overlap 3147633 3147638 ATTTTTTAATATTAA CTTTTATAAATAAAATTAT TTAAT AGAATTTTATTTATAAAAG TTACATTTGATTCGA TERM 4192 3147679 - 3147637 - f 93 -11.1 -3.36452 | opp_overlap 3147637 3147633 3147638, overlap 3147665 ATTTTTTAATATTAA CTTTTATAAATAAAATTAT TTAAT AGAATTTTATTTATAAAAG TTACATTTGATTCGA TERM 4193 3148268 - 3148249 - g 84 -3.7 -5.86965 | ATGGACCAAAAAAAA TTGTAAT AACAGG ATTACAA AACCATGATTATGTA CLH_2950 3147705 - 3148535 + | pyridoxine kinase TERM 4194 3148540 - 3148557 + T 100 -11.3 -4.86621 | opp_overlap 3148540 AACTAAAATAAAAAA GCGTGGA TAAA TCCACGC TTTTTAGTTAAAAAT TERM 4195 3148557 - 3148540 - T 100 -11.3 -5.85244 | opp_overlap 3148540 AACTAAAATAAAAAA GCGTGGA TAAA TCCACGC TTTTTAGTTAAAAAT trx 3148981 - 3148670 - | thioredoxin CLH_2952 3149958 - 3149092 - | pyridine nucleotide-disulphide oxidoreductase CLH_2953 3150467 - 3151264 + | histidinol phosphate phosphatase HisJ family TERM 4196 3151385 - 3151353 - T 88 -6.5 -5.54894 | opp_overlap 3151353 AACTTACTAAAAAAA TCAGTTATAAAGAAT AAT ATCTTCTATAACTGA TTTTTTATATTTTAT TERM 4197 3151353 - 3151385 + T 87 -5.9 -5.65678 | gap 1, opp_overlap 3151353 AACTTACTAAAAAAA TCAGTTATA-AAGA ATAATA TCTTCTATAACTGA TTTTTTATATTTTAT CLH_2954 3153532 - 3151478 - | membrane assosiated methyl-accepting chemotaxis protein with hamp domain TERM 4198 3151517 - 3151532 + g 70 -6.2 -4.10161 | overlap 3151516 AGAATTAAGATTATC TGAAAC CTCA GTTTCA TTTTCCACAATAGTA TERM 4199 3153683 - 3153641 - R 95 -10.9 -3.74345 | opp_overlap 3153640 3153638 3153636 ATTTACATAGTCAAA TGGAGTATTACAAAAAAAT ATAAA ATAATTTTGTAATACTCCA CTATATATTAAAATT CLH_2955 3155937 - 3153898 - | putative methyl-accepting chemotaxis protein TERM 4200 3156422 - 3156449 + r 100 -7.1 -6.0458 | opp_overlap 3156422 TTTAAAATCAAAAAA GATGATCTCTG AAAATA CAGAAATCATC TTTTTTTTAATTTAT TERM 4201 3156449 - 3156422 - R 100 -9.3 -5.46698 | opp_overlap 3156422 TTTAAAATCAAAAAA GATGATCTCTG AAAATA CAGAAATCATC TTTTTTTTAATTTAT TERM 4202 3156497 - 3156521 + r 71 -7.4 -3.84648 | opp_overlap 3156497, overlap 3156486 CTAATAAATAATCTA TTGTTTAATT TATCT AATTAAACAA TTTCCTCATATTAAA gltA 3157951 - 3156560 - | glutamate synthase (NADPH), homotetrameric CLH_2957 3158841 - 3157951 - | conserved electron-transfer protein TERM 4203 3158987 - 3158970 - R 83 -7 -5.00467 | opp_overlap 3158969 3158962 TTAATAATAACAAAA GCTCTC TAAAGC GAGAGC CATTGCTATATACTA CLH_2958 3160262 - 3159096 - | NADPH-dependent butanol dehydrogenase TERM 4204 3160530 - 3160474 - R 100 -11.4 -4.63932 | gap 1, opp_overlap 3160474 3160476 3160477, overlap 3160459 3160477 TATTTTCCAATAAAA TAATGTCCTAAAATAATACACTTATCT ATTA AGA-AAATGTATCATTTTAGGACACTG TTAGTTTTTATTACA TERM 4205 3160474 - 3160530 + r 71 -7 -3.9407 | gap 1, opp_overlap 3160459 3160474 3160477, overlap 3160476 3160477 TATTTTCCAATAAAA TAATGTCCTAAAATAATACACTTATCT ATTA AGAAAA-TGTATCATTTTAGGACACTG TTAGTTTTTATTACA TERM 4206 3160477 - 3160527 + r 83 -10.9 -2.7089 | gap 1, opp_overlap 3160474 3160477, overlap 3160476 3160474 TTTCCAATAAAATAA TGTCCTAAAATAATACACTTATCT ATTA AGAAAA-TGTATCATTTTAGGACA CTGTTAGTTTTTATT TERM 4207 3160527 - 3160477 - R 100 -15.3 -4.43307 | gap 1, opp_overlap 3160477 3160476 3160474, overlap 3160474 TTTCCAATAAAATAA TGTCCTAAAATAATACACTTATCT ATTA AGA-AAATGTATCATTTTAGGACA CTGTTAGTTTTTATT TERM 4208 3160682 - 3160692 + r 80 -2.6 -6.09196 | TTAGATTATCTTAAC TATA TCT TATA TTTTTTTATTTTCAA CLH_2959 3162591 - 3160681 - | signal-transduction and transcriptional-control protein TERM 4209 3162785 - 3162774 - R 73 -2.2 -5.64873 | TTTAATAAGAAAAAA TCGC CTAG ACGA CTTTAGATCAGGCGA TERM 4210 3162988 - 3162959 - R 78 -5.9 -5.07652 | overlap 3162954 TTCCTGAAAATAAAA TAACTAAGAAACT TGAA AATTCCTTAGTCA TTTTTATGTTTATAA CLH_2960 3163451 - 3163008 - | 3D domain protein TERM 4211 3163649 - 3163665 + r 75 -6.7 -4.42974 | opp_overlap 3163656, overlap 3163642 TTGCTAAGTTTATAC GTATAAA TTT TTTATAC TTTCTTATATATAAA TERM 4212 3163705 - 3163685 - R 100 -8.4 -5.76633 | opp_overlap 3163685 TTATATATAAAAAAA GTAGATTC TTTTT GAATCTAC TCCTTAAAATAAACT CLH_2961 3164174 - 3163734 - | hypothetical protein TERM 4213 3164508 - 3164478 - R 76 -2.7 -5.86332 | gap 1, opp_overlap 3164478 TTAAGGCAAAAAAAA TAGTAGCTTCACTC ATTT AAGTCA-GCTACTA TTCTTATTAATATCC prfC 3166201 - 3164606 - | peptide chain release factor 3 CLH_2963 3170958 - 3166744 - | putative cell wall binding repeat protein TERM 4214 3167779 - 3167794 + g 86 -6.2 -5.22794 | opp_overlap 3167778, overlap 3167792 ACGATCTGAATTCAT TGCATT ATCT AATGCA TTTTTTAATGCTTCT TERM 4215 3170518 - 3170536 + g 78 -9 -3.29461 | TGGTTTAGATCCATA TGGTAATA CAT TATTACCA TTATCAAAAGCCTTA CLH_2964 3171639 - 3171055 - | hypothetical protein TERM 4216 3171390 - 3171401 + g 70 -3 -5.22768 | TATTATTACTTTCTT TTTC ATTA GAAA TTTCTTTTTTATTCT TERM 4217 3171991 - 3171937 - R 100 -20.6 -5.60993 | opp_overlap 3171942 3171958 TTCTGTATAAAAAAA TATTAGCTACTATACTTATAATTGTT ATT AACAAATTTAAGTATAGTAGCTAATA TAGGAGTGTTCTTTT TERM 4218 3171942 - 3171986 + r 100 -16.1 -2.63479 | opp_overlap 3171937, overlap 3171958 TATAAAAAAATATTA GCTACTATACTTATAATTGTT ATT AACAAATTTAAGTATAGTAGC TAATATAGGAGTGTT CLH_2965 3174097 - 3172010 - | putative ggdef domain protein TERM 4219 3173439 - 3173419 - G 88 -9.1 -4.52589 | TCTTTTTATATAAAA TATCTGCGA TTA TCGCAAATA ACTCTACTTTATGCA CLH_2966 3175574 - 3174141 - | surface protein PspC TERM 4220 3175824 - 3175811 - R 70 -2.5 -5.46276 | AATACACATAAAAAA TAAAT CTGC ATTTA GAAAAAGGAAGGTCA TERM 4221 3175862 - 3175831 - R 100 -13.2 -4.87665 | opp_overlap 3175831 CTGCATTTAGAAAAA GGAAGGTCACAT CTCTCTCT ATGTGACCTTCC TTTTTCTCTCTCTAA TERM 4222 3175831 - 3175862 + r 100 -13.2 -5.07275 | opp_overlap 3175831 CTGCATTTAGAAAAA GGAAGGTCACAT CTCTCTCT ATGTGACCTTCC TTTTTCTCTCTCTAA TERM 4223 3176050 - 3176019 - R 100 -14 -5.65927 | opp_overlap 3176019 TATCCAAATAAAAAA TACCTTGAAGAAAT TTCT ATCTCTTCAAGGTA TTTTTATTTAAATAA TERM 4224 3176019 - 3176050 + r 100 -11.8 -5.30616 | opp_overlap 3176019 TATCCAAATAAAAAA TACCTTGAAGAAAT TTCT ATCTCTTCAAGGTA TTTTTATTTAAATAA CLH_2967 3177369 - 3176131 - | surface protein PspC CLH_2968 3178866 - 3177520 - | collagenolytic protease CLH_2969 3179902 - 3179027 - | surface protein PspC TERM 4225 3180034 - 3180017 - R 80 -2.7 -6.12458 | overlap 3180019 CAAAAAAAGAAAAAA CAGTAAT TATC ATTACAG AACATCTTATAATAA TERM 4226 3180171 - 3180142 - R 88 -5.1 -5.88197 | TTAAATATAAAAAAA GTGACAGTTAC ACTATAAA ATAACTGCCAC CAAATAGTATATATT CLH_2970 3181792 - 3180188 - | collagenolytic protease TERM 4227 3181422 - 3181439 + g 100 -7.7 -5.79526 | TTTTCATCTGGTAAT GCAGCTA ATTC TGGCTGC TTTTTTTTAGCCTCT TERM 4228 3181504 - 3181524 + g 71 -2.6 -5.40625 | GTGCAGTAACTTCTT TAGTCACT ATTGG AGTCACTA TTTTTTCTATAGTCT TERM 4229 3182114 - 3182073 - R 72 -5.1 -5.03314 | overlap 3182076 TTCATTTGTAAAAAA TTACACCCCAAAGATCAGC ATTT GCTTACCCATGAGGTGTGA TTTTTTCAAATATTA CLH_2971 3183839 - 3182127 - | membrane assosiated methyl-accepting chemotaxis protein with hamp domain TERM 4230 3182316 - 3182328 + g 72 -6.3 -4.40358 | ACTCACACCCCCTAT TGTAG ATG CTACA TTTTGTGACATAGAT TERM 4231 3184348 - 3184290 - R 100 -33.2 -3.65828 | opp_overlap 3184290, overlap 3184297 3184301 ATATAAATTCCTAAA TAGACAATAAAGTTTAGAAGTTACACCC AGC AGGTGTAACTTCTAAACTTTATTGTCTA TTTATTATTTTTCAT TERM 4232 3184290 - 3184348 + r 100 -32.5 -4.78157 | opp_overlap 3184290 3184297 3184301 ATATAAATTCCTAAA TAGACAATAAAGTTTAGAAGTTACACC CAGCA GGTGTAACTTCTAAACTTTATTGTCTA TTTATTATTTTTCAT TERM 4233 3184341 - 3184297 - R 100 -24.1 -3.76232 | opp_overlap 3184290, overlap 3184290 3184301 TTCCTAAATAGACAA TAAAGTTTAGAAGTTACACCC AGC AGGTGTAACTTCTAAACTTTA TTGTCTATTTATTAT TERM 4234 3184337 - 3184301 - R 100 -20.5 -4.48664 | opp_overlap 3184290, overlap 3184297 3184290 TAAATAGACAATAAA GTTTAGAAGTTACACCC AGC AGGTGTAACTTCTAAAC TTTATTGTCTATTTA CLH_2972 3184736 - 3184419 - | collagenolytic protease TERM 4235 3184825 - 3184810 - R 74 -9 -3.07622 | opp_overlap 3184807 3184810 ATATATCTTATGTAA CTACCC CAAA GGGTAG GTTATTTATATTGTT TERM 4236 3184810 - 3184825 + r 75 -9 -3.14851 | opp_overlap 3184810, overlap 3184807 ATATATCTTATGTAA CTACCC CAAA GGGTAG GTTATTTATATTGTT TERM 4237 3184933 - 3184976 + r 100 -19.4 -4.56775 | opp_overlap 3184933 TAAAAAATAAAAAAA TACTTAATCATCAAGTGAAT ATAA ATTCATTTGATGATTAAGTA TTTTTAAAAGCAAAT TERM 4238 3184976 - 3184933 - R 100 -17.2 -6.28401 | opp_overlap 3184933 TAAAAAATAAAAAAA TACTTAATCATCAAGTGAAT ATAA ATTCATTTGATGATTAAGTA TTTTTAAAAGCAAAT CLH_2973 3187569 - 3185065 - | transcriptional regulator, LuxR family protein TERM 4239 3187016 - 3187032 + g 78 -5.9 -4.93079 | ATAGCAGGCCATCCC CTAGTAG TCT CTATTAG TTTATTTATTTTATT TERM 4240 3187645 - 3187608 - R 100 -16.7 -4.08958 | gap 1, opp_overlap 3187616, overlap 3187616 ATTTTTAAAGAAGAA TAA-AAAAAGGATGAGGC AAA GCCTCATCCTTTTTATTA AGATAATTATCCGTT TERM 4241 3187636 - 3187616 - R 100 -15.5 -5.97979 | opp_overlap 3187616, overlap 3187608 AGAAGAATAAAAAAA GGATGAGGC AAA GCCTCATCC TTTTTATTAAGATAA TERM 4242 3187616 - 3187636 + r 100 -15.5 -5.08601 | opp_overlap 3187616 3187608 AGAAGAATAAAAAAA GGATGAGGC AAA GCCTCATCC TTTTTATTAAGATAA CLH_2974 3189480 - 3187666 - | surface protein PspC TERM 4243 3188789 - 3188811 + g 72 -4.8 -4.90455 | overlap 3188792 TGTCCAATTACATTT GCATCAGCTA TTT TAGCAGATAC TTTTTGTCCATCTGT TERM 4244 3189877 - 3189846 - R 78 -6.7 -4.78752 | ACTACAACGCAAAAA TGACAGTCACC TTTTTTCATT AGTGACTGTCA CCTGCTTACTTATAA CLH_2975 3192298 - 3190064 - | surface protein PspC TERM 4245 3192514 - 3192497 - R 85 -6.3 -5.60993 | opp_overlap 3192491 3192497 TTTTCTACAAAAAAA GTCATGC ATAA ACATGAC TTTTTCCATTTTTTA TERM 4246 3192497 - 3192514 + r 75 -5.6 -4.95854 | opp_overlap 3192497, overlap 3192491 TTTTCTACAAAAAAA GTCATG CATAAA CATGAC TTTTTCCATTTTTTA CLH_2976 3194232 - 3192559 - | collagenolytic protease TERM 4247 3193467 - 3193487 + g 100 -8.5 -5.33848 | AATCTCTTCCACCTC TATATACAT TTA ATGTATATA TTTTTTCATTATCAT TERM 4248 3194549 - 3194516 - R 81 -5.5 -5.4251 | gap 1 TGTATATATAAAAAA TCCCTAATATTAAGAT ACT AACTC-ATATTAGGGA TAAAAATATTATTTT CLH_2977 3196926 - 3194620 - | surface protein PspA TERM 4249 3197125 - 3197154 + r 90 -12.3 -3.04322 | opp_overlap 3197126 3197130, overlap 3197130 ATTTTTTACATAAAA ATAAAGGACTTCC AAAA GGAAGTCCTTTAA TATTAAAAGCTTAAA TERM 4250 3197153 - 3197126 - R 100 -15.8 -4.96848 | opp_overlap 3197125 3197130, overlap 3197130 TTTTTTACATAAAAA TAAAGGACTTCC AAAA GGAAGTCCTTTA ATATTAAAAGCTTAA TERM 4251 3197149 - 3197130 - R 100 -12.2 -5.01422 | opp_overlap 3197125 3197130, overlap 3197126 TTACATAAAAATAAA GGACTTCC AAAA GGAAGTCC TTTAATATTAAAAGC TERM 4252 3197130 - 3197149 + r 100 -12.2 -3.92324 | opp_overlap 3197130 3197126, overlap 3197125 TTACATAAAAATAAA GGACTTCC AAAA GGAAGTCC TTTAATATTAAAAGC CLH_2978 3198954 - 3197170 - | hypothetical protein TERM 4253 3199186 - 3199204 + H 70 -6 -4.35682 | TATCTTTTTTCTATA TGTGGATT ATT ATTCCACA TTCTTTTCGTTATAC TERM 4254 3199424 - 3199400 - H 86 -5.8 -5.80817 | opp_overlap 3199400 CTGAATATAAAAAAA CAGATAAGAC TTTTG ATCTCATCTG TTTCCATTTTTTGCA TERM 4255 3200890 - 3200903 + G 74 -6.7 -4.42238 | TTAAATGAAGATTCT GATGG TTAT CCATC TTTTAATTACGCTGA CLH_2979 3199513 - 3200994 + | putative lipoprotein TERM 4256 3201002 - 3201033 + T 83 -9.6 -3.5556 | opp_overlap 3201002, overlap 3200998 AGCTTTAAAAATAAA TGACAGTTATCAAA TCAT TTTGATGACTGCCA TTAGTTTAGACTTTA TERM 4257 3201033 - 3201002 - T 95 -9.6 -4.86385 | opp_overlap 3201002 3200998 AGCTTTAAAAATAAA TGACAGTTATCAAA TCAT TTTGATGACTGCCA TTAGTTTAGACTTTA CLH_2980 3203142 - 3201103 - | neutral endopeptidase TERM 4258 3203586 - 3203531 - R 100 -21 -4.59342 | opp_overlap 3203534 3203538 3203542, overlap 3203533 3203534 3203538 TGTATTAGAAAGAAA TATTAAAGAAAGCACATACTTAATCA TTTC TGATTAAGTATGTGCTTTCTTTATTG ATTAAATTTAAAAAT TERM 4259 3203584 - 3203533 - R 100 -23.6 -3.90309 | opp_overlap 3203534 3203538 3203542, overlap 3203531 3203534 3203538 TATTAGAAAGAAATA TTAAAGAAAGCACATACTTAATCA TTTC TGATTAAGTATGTGCTTTCTTTAT TGATTAAATTTAAAA TERM 4260 3203534 - 3203583 + r 100 -27.1 -3.43217 | opp_overlap 3203533 3203531 3203534 3203538, overlap 3203538 3203542 ATTAGAAAGAAATAT TAAAGAAAGCACATACTTAATCA TTTC TGATTAAGTATGTGCTTTCTTTA TTGATTAAATTTAAA TERM 4261 3203583 - 3203534 - R 100 -27.1 -2.93101 | opp_overlap 3203534 3203538 3203542, overlap 3203533 3203531 3203538 ATTAGAAAGAAATAT TAAAGAAAGCACATACTTAATCA TTTC TGATTAAGTATGTGCTTTCTTTA TTGATTAAATTTAAA TERM 4262 3203538 - 3203579 + r 100 -23.5 -4.34223 | opp_overlap 3203534 3203533 3203531 3203538, overlap 3203534 3203542 GAAAGAAATATTAAA GAAAGCACATACTTAATCA TTTC TGATTAAGTATGTGCTTTC TTTATTGATTAAATT TERM 4263 3203579 - 3203538 - R 100 -23.5 -4.10269 | opp_overlap 3203538 3203534 3203542, overlap 3203534 3203533 3203531 GAAAGAAATATTAAA GAAAGCACATACTTAATCA TTTC TGATTAAGTATGTGCTTTC TTTATTGATTAAATT TERM 4264 3203542 - 3203575 + r 100 -18.5 -4.73297 | opp_overlap 3203538 3203534 3203533 3203531, overlap 3203538 3203534 GAAATATTAAAGAAA GCACATACTTAATCA TTTC TGATTAAGTATGTGC TTTCTTTATTGATTA CLH_2981 3204088 - 3203594 - | hypothetical protein CLH_2982 3204596 - 3204081 - | hypothetical protein CLH_2983 3204590 - 3204739 + | hypothetical protein CLH_2984 3205656 - 3204922 - | phage protein TERM 4265 3205837 - 3205812 - R 79 -4.8 -5.60993 | TTTTTTATAAAAAAA CAGACAAGAC TTTTAT ATCTTATCTG TTATAGTGCTTGTCA CLH_2985 3206746 - 3205898 - | glycosyl transferase, group 2 family protein TERM 4266 3207433 - 3207416 - g 71 -4.3 -4.89233 | opp_overlap 3207416 3207431, overlap 3207431 CATTAATATTAAAAA TTATATT AGTA AATATAA TTGCATTATTTATTT TERM 4267 3207511 - 3207527 + G 70 -6.7 -3.99494 | opp_overlap 3207511 GGACTTAATTCTAAA GTATTTT ATA AAAATAC TTGTTCTTCAATTGA CLH_2986 3206866 - 3207699 + | Ymf77 TERM 4268 3207754 - 3207716 - T 86 -7.6 -4.7878 | opp_overlap 3207746, overlap 3207717 TATTTATAAAATAAA CTGCTACAAGATCAACTC TCT AACTTAATCTTGTAGCAT ACAATTAATATTTAT TERM 4269 3207753 - 3207717 - T 93 -11.1 -3.46183 | opp_overlap 3207746, overlap 3207716 ATTTATAAAATAAAC TGCTACAAGATCAACTC TCT AACTTAATCTTGTAGCA TACAATTAATATTTA CLH_2987 3208017 - 3207787 - | acyl carrier protein TERM 4270 3208046 - 3208059 + r 76 -2.5 -5.93252 | opp_overlap 3208046, overlap 3208051 TTACATTCATATAAT TATTT TAAA AAATA TTTTTTATTTTTCAA CLH_2988 3209578 - 3208064 - | amino acid adenylation domain protein CLH_2989 3210957 - 3209599 - | hypothetical protein TERM 4271 3209976 - 3209956 - G 100 -11.3 -4.59773 | opp_overlap 3209954 TCTTAGTTTTAAAAA TTCAGCAAA GGA TTTGCTGAA AACTTCTGATCCGGT CLH_2990 3212542 - 3210944 - | alginate O-acetylation protein TERM 4272 3212108 - 3212130 + g 82 -6.4 -5.18371 | opp_overlap 3212112 TCCAAGGGGTAATAA TAAACCTAAT TTA ATTGGGTTTG TTTTATTTTCTGAAA CLH_2991 3213775 - 3213554 - | transposase, IS4 family protein CLH_2992 3213906 - 3213739 - | hypothetical protein CLH_2993 3215022 - 3214165 - | glycosyl transferase, family 2 CLH_2994 3216175 - 3215027 - | glycosyl transferase, group 2 family protein CLH_2995 3217201 - 3216176 - | alcohol dehydrogenase, zinc-dependent CLH_2996 3217910 - 3217191 - | putative 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase CLH_2997 3219189 - 3217936 - | putative CDP-glycerol:glycerophosphate glycerophosphotransferase TERM 4273 3218681 - 3218703 + g 89 -7.8 -5.08824 | opp_overlap 3218681 CTAGGATTTTTAATA TTTTGAAGAG AAT CTCTTCCAAA TTTTTTAAATGCCCC TERM 4274 3218758 - 3218783 + g 77 -9.3 -2.86164 | overlap 3218760 ATTAGTATCTTTTCT TATCTTTATTT TAGA AAATAAAGATA TATAATCATTCACAA CLH_2998 3219970 - 3219236 - | teichoic acids export ATP-binding protein TagH CLH_2999 3220758 - 3219982 - | ABC transporter integral membrane subunit TERM 4275 3220666 - 3220680 + g 72 -5.8 -4.6038 | opp_overlap 3220649 3220644 3220668, overlap 3220649 CCATATTATTCCTAA TATAGA GTT TCTATA TTTTAATTTAATATC rfbD 3221632 - 3220778 - | dTDP-4-dehydrorhamnose reductase CLH_3001 3222630 - 3221653 - | glycosyltransferase rfbB 3223744 - 3222725 - | dTDP-glucose 4,6-dehydratase rfbC 3224397 - 3223858 - | dTDP-4-dehydrorhamnose 3,5-epimerase TERM 4276 3223938 - 3223914 - G 71 -7.9 -3.53224 | overlap 3223917 TATCTTTTTCTGAAA GAATGGGATTT TCT ATACCCCATTC AACGCCTATTTCTGG rfbA 3225307 - 3224429 - | glucose-1-phosphate thymidylyltransferase TERM 4277 3225372 - 3225398 + H 70 -3.9 -5.11937 | opp_overlap 3225373 3225379, overlap 3225373 TATTTTAACATAAAG ATGTAAATAAA CAAAT TTTATTTACAA TTTTTTACGGTTGTT TERM 4278 3225397 - 3225373 - H 70 -7.4 -3.69842 | opp_overlap 3225373 3225372, overlap 3225379 ATTTTAACATAAAGA TGTAAATAAA CAAAT TTTATTTACA ATTTTTTACGGTTGT TERM 4279 3226113 - 3226153 + G 75 -7.2 -4.19974 | gap 1, opp_overlap 3226121 GGATATATAGCTAAC TCATCA-AATTTTCAAGGT AAAA AACTTGGAAATTATGATGA TTTGTTCACCGTTTT TERM 4280 3226975 - 3226965 - g 74 -4 -5.20735 | GTAATAAAAAATAAA TCAA TAA TTGA AAAACCGGAAAATGT CLH_3005 3225576 - 3227015 + | undecaprenyl-phosphate glucose phosphotransferase TERM 4281 3227018 - 3227062 + T 100 -12.4 -5.08169 | opp_overlap 3227021, overlap 3227021 CATAAATATATAAAA AAAGTATGACCTACACGACT AACTC AGTTATGTAGGTCATACTTA TTTTTTAGACTCTAT TERM 4282 3227059 - 3227021 - T 100 -14.8 -5.82281 | opp_overlap 3227018 3227021 AAATATATAAAAAAA GTATGACCTACACGACTA ACT CAGTTATGTAGGTCATAC TTATTTTTTAGACTC TERM 4283 3227021 - 3227059 + T 100 -14.1 -4.63089 | opp_overlap 3227021, overlap 3227018 AAATATATAAAAAAA GTATGACCTACACGACT AACTC AGTTATGTAGGTCATAC TTATTTTTTAGACTC TERM 4284 3227310 - 3227296 - T 70 -2.9 -5.47431 | opp_overlap 3227296 TGAACATACAAAAAA CAAAT CATTC ATTTG TTTACTCATCATAAT CLH_3006 3227474 - 3227328 - | hypothetical protein TERM 4285 3229443 - 3229430 - g 74 -2.4 -5.56372 | AAAGGAAAAGAAAAA CTAG GATCTG CTAG AGGATATATTTGGTC CLH_3007 3228041 - 3229873 + | O-antigen polymerase family TERM 4286 3229945 - 3229919 - T 82 -4.5 -5.64421 | gap 1, opp_overlap 3229907 3229919 ACTTGAAATAAAAAA TCCAGAGTTATC ATTT GATT-CTCTGGA TTTTTTACTCTTCAC TERM 4287 3229919 - 3229945 + T 76 -4.5 -5.27779 | gap 1, opp_overlap 3229919, overlap 3229907 ACTTGAAATAAAAAA TCCAGAGTTATC ATTT GATT-CTCTGGA TTTTTTACTCTTCAC CLH_3008 3230386 - 3229979 - | protein of unknown function DUF86 CLH_3009 3230777 - 3230376 - | DNA polymerase, beta domain protein region TERM 4288 3230891 - 3230867 - R 100 -13.7 -3.55219 | overlap 3230870 AAGCTTATGATAGAA CAAGCTGGTGA CAG TCACCAGCTTA GACAAAAAAGGTACT TERM 4289 3230888 - 3230870 - R 100 -13.2 -3.9093 | overlap 3230867 CTTATGATAGAACAA GCTGGTGA CAG TCACCAGC TTAGACAAAAAAGGT TERM 4290 3230923 - 3230901 - R 100 -13.5 -5.37043 | opp_overlap 3230901 3230898 AGCTTAGACAAAAAA GGTACTCCC ACATG GGGAGTACC TAATATATAAAATTT TERM 4291 3230901 - 3230923 + r 91 -13.5 -2.70543 | opp_overlap 3230901, overlap 3230898 AGCTTAGACAAAAAA GGTACTCCC ACATG GGGAGTACC TAATATATAAAATTT CLH_3010 3232752 - 3230965 - | SigA binding protein TERM 4292 3231380 - 3231396 + g 80 -6.5 -4.82855 | opp_overlap 3231379 GAGTTCTTAACCCAT CCAGTAG TTA CTTCTGG TTTTTCAATTTCATC TERM 4293 3231463 - 3231477 + g 76 -7.2 -4.32177 | ATCTTCTTCATTCCA GATAAC CAT GTTATC TTTGTTGTAAACTGA TERM 4294 3231908 - 3231933 + g 78 -7.7 -4.33808 | TTGTTTCCATCTGTA GAAGTGAATGC ATTT GTATTTACTTC TTTTCCGTTGATTTC TERM 4295 3233008 - 3233039 + r 100 -14.8 -3.6512 | opp_overlap 3232996 3233008, overlap 3233002 3232998 3232999 AAATTGTAATAAAAA TACTTGGTATTTTA ATTA TAAAATACCAAGTA TTTAGCACTTATTTA TERM 4296 3233039 - 3233008 - R 100 -14.8 -5.11112 | opp_overlap 3233002 3233008 3232998 3232999, overlap 3232996 AAATTGTAATAAAAA TACTTGGTATTTTA ATTA TAAAATACCAAGTA TTTAGCACTTATTTA TERM 4297 3233164 - 3233141 - R 93 -7.5 -5.20783 | opp_overlap 3233141 3233135 ATCTAAACATAAAAA GAGAACACC ATAAAA AGTGTTCTC TTACTATTTAATTTA CLH_3011 3235775 - 3233454 - | SigA binding protein TERM 4298 3234735 - 3234747 + g 76 -4.1 -5.4833 | AATTCCTGTTGCTGA TGCTG TTT TAGCA TTTTTTATTCCATCA TERM 4299 3236810 - 3236790 - H 76 -4.2 -5.29716 | TTAAGATAAGAAAAA TAAATAAA TTGTT TTTATTTA CACTATACATTACAA TERM 4300 3237273 - 3237296 + H 70 -2.6 -5.46629 | opp_overlap 3237277, overlap 3237274 3237277 CTTATTTTAATTTAT TTAATATATT TTTT AATATATTAC TTTTTTTAAAATATT CLH_3012 3237328 - 3237579 + | hypothetical protein TERM 4301 3237644 - 3237599 - T 100 -17.3 -4.39002 | opp_overlap 3237604, overlap 3237604 AAACTCCCGAGAAAA GAAAACAGAGTACTTAATGAC ATAT ATCATTAAGTACTCTGTTTTT CATTAGACTATACTT TERM 4302 3237639 - 3237604 - T 100 -17.2 -5.18371 | opp_overlap 3237604, overlap 3237599 CCCGAGAAAAGAAAA CAGAGTACTTAATGAC ATAT ATCATTAAGTACTCTG TTTTTCATTAGACTA TERM 4303 3237604 - 3237639 + T 100 -16.5 -4.87291 | opp_overlap 3237604 3237599 CCCGAGAAAAGAAAA CAGAGTACTTAATGA CATATA TCATTAAGTACTCTG TTTTTCATTAGACTA CLH_3013 3239978 - 3237864 - | putative surface protein C TERM 4304 3240288 - 3240259 - R 79 -8.7 -3.76176 | opp_overlap 3240263 3240266, overlap 3240266 TAAACTTATTAAGAA CAAAAAACGTGGC TGAT ACCACGTTCTTTA TTTTAAATATATTAT TERM 4305 3240281 - 3240266 - R 90 -6.8 -5.66229 | opp_overlap 3240263 3240266, overlap 3240259 ATTAAGAACAAAAAA CGTGGC TGAT ACCACG TTCTTTATTTTAAAT TERM 4306 3240266 - 3240281 + r 72 -6.1 -4.44301 | opp_overlap 3240266 3240259, overlap 3240263 ATTAAGAACAAAAAA CGTGG CTGATA CCACG TTCTTTATTTTAAAT CLH_3014 3241157 - 3240312 - | putative hexulose-6-phosphate isomerase TERM 4307 3241181 - 3241203 + r 73 -6.4 -4.33214 | opp_overlap 3241181, overlap 3241178 CTCAACTTTCTTAAA TGTCTTTTAA TTA TTAATAGACA TTCTTCTTTTATTCT araD 3242044 - 3241355 - | L-ribulose-5-phosphate 4-epimerase CLH_3016 3243438 - 3242401 - | hypothetical protein TERM 4308 3243501 - 3243557 + r 81 -7.9 -4.48792 | gap 2, opp_overlap 3243504 3243507 3243508 3243546 TTTTATAATCCTATA TAAGAATTTCTTAGTTTTAGAAGCAAT TAACC GTT-CATCTAAAACTAAGAA-TTCTTA TTATTTTTCACTTAT CLH_3017 3243870 - 3243577 - | PTS system enzyme IIB component CLH_3018 3245403 - 3243949 - | ascorbate-specific PTS system enzyme IIC CLH_3019 3245939 - 3245496 - | phosphotransferase system mannitol/fructose-specific IIA domain TERM 4309 3245999 - 3246056 + r 100 -11.7 -4.09628 | opp_overlap 3246004, overlap 3246005 3246006 3246014 TTTAAATTTTGATTT TAATACCTTTAAGTTTCAGATAAGGGT GGTT GCCCTTATCTGATATTTAAAATTATTA TTCTTATTTAAGATA TERM 4310 3246005 - 3246050 + r 95 -10.7 -4.17009 | opp_overlap 3246004, overlap 3245999 3246006 3246014 TTTTGATTTTAATAC CTTTAAGTTTCAGATAAGGGT GGTT GCCCTTATCTGATATTTAAAA TTATTATTCTTATTT TERM 4311 3246006 - 3246049 + r 100 -14.2 -3.07765 | opp_overlap 3246004, overlap 3246005 3245999 3246014 TTTGATTTTAATACC TTTAAGTTTCAGATAAGGGT GGTT GCCCTTATCTGATATTTAAA ATTATTATTCTTATT TERM 4312 3246014 - 3246041 + r 100 -13.6 -3.43751 | opp_overlap 3246004, overlap 3246006 3246005 3245999 TAATACCTTTAAGTT TCAGATAAGGGT GGTT GCCCTTATCTGA TATTTAAAATTATTA CLH_3020 3247144 - 3246080 - | metal-dependent hydrolase TERM 4313 3247516 - 3247496 - g 70 -5.5 -4.61147 | TAAGAGGAGAGAAAA GATTTTAGA TTA TCTTAAATC AAACGAAAGTATAAA CLH_3021 3247455 - 3248246 + | transcriptional regulator, DeoR family TERM 4314 3248329 - 3248290 - T 100 -18.3 -5.36441 | opp_overlap 3248293 TTGGTATACAAAAAA GAAGCTGTTTATTATGA TAATAT TCATAATAAACAGCTTC TAAAAATTATAATTT TERM 4315 3248293 - 3248326 + T 100 -14.2 -3.34233 | opp_overlap 3248290 GTATACAAAAAAGAA GCTGTTTATTATGA TAATAT TCATAATAAACAGC TTCTAAAAATTATAA CLH_3022 3249741 - 3248452 - | probable M18-family aminopeptidase 2 TERM 4316 3249198 - 3249219 + g 73 -8.1 -3.40971 | overlap 3249195 TTTCTAACTTATCAG TTGCCATTG TAAG CAATGGTAA TGTATCTTTTTGTTT CLH_3023 3250491 - 3251666 + | cation efflux family protein TERM 4317 3251719 - 3251743 + F 74 -8.7 -3.10612 | opp_overlap 3251719, overlap 3251721 CTATAACTTCAATAA TAGTTTCACTT AAA AAGTGCAACTA TATATTAGCATTAAC TERM 4318 3251743 - 3251719 - f 79 -8.7 -3.6968 | opp_overlap 3251719 3251721 CTATAACTTCAATAA TAGTTTCACTT AAA AAGTGCAACTA TATATTAGCATTAAC TERM 4319 3251865 - 3251825 - f 100 -19.5 -3.60074 | opp_overlap 3251825, overlap 3251816 TATAAATTGGTTAAA TATACCTCATATAAAGCAT AAA ATACTTTATATGAGGTATA TTTTTATTATTTTTA TERM 4320 3251825 - 3251865 + F 100 -17.3 -5.51353 | opp_overlap 3251825 3251816 TATAAATTGGTTAAA TATACCTCATATAAAGCAT AAA ATACTTTATATGAGGTATA TTTTTATTATTTTTA TERM 4321 3251997 - 3252018 + G 81 -10.3 -2.73007 | opp_overlap 3251996 3251995, overlap 3251996 3252014 3252016 GAGAAAAAAATGATT GCATAACAT CTAC ATGTTATGC CTTTGGCAAGGTATT CLH_3024 3251951 - 3252274 + | hypothetical protein CLH_3025 3254639 - 3253008 - | putative acetolactate synthase large subunit CLH_3026 3255087 - 3254626 - | hypothetical protein TERM 4322 3255354 - 3255398 + r 100 -16.2 -4.68132 | opp_overlap 3255356, overlap 3255356 TGTTTGTAATAAGAA AATTAGCAGTTCAAAATAAT TTCTC ATTATTTTGAACTGCTAATC TTTATTTATGTATTA TERM 4323 3255396 - 3255356 - R 100 -18.8 -4.89477 | opp_overlap 3255354 3255356 TTTGTAATAAGAAAA TTAGCAGTTCAAAATAAT TTCTC ATTATTTTGAACTGCTAA TCTTTATTTATGTAT TERM 4324 3255356 - 3255396 + r 100 -18.8 -3.92887 | opp_overlap 3255356, overlap 3255354 TTTGTAATAAGAAAA TTAGCAGTTCAAAATAAT TTCTC ATTATTTTGAACTGCTAA TCTTTATTTATGTAT CLH_3027 3255913 - 3255542 - | hypothetical protein TERM 4325 3255709 - 3255723 + g 71 -4.3 -4.93968 | CATAAAATGGCTTTA CATCT GGAAA AGATG TTTTTAATTCTGCAT CLH_3028 3256480 - 3256109 - | hypothetical protein TERM 4326 3256444 - 3256460 + g 74 -3.8 -5.19003 | CTTCTACTCTCATAC TGTATT TACAT AATACA TTTATTTTTTCTATT CLH_3029 3256850 - 3257500 + | hypothetical protein CLH_3030 3259117 - 3257651 - | methyl-accepting chemotaxis protein TERM 4327 3257761 - 3257778 + g 71 -7.7 -3.66666 | TAGCTGAAATTTCCT CCATAGC TGAT GCTGTGG TTTCAACATTTTCAC TERM 4328 3257800 - 3257817 + g 83 -8.5 -4.59773 | opp_overlap 3257802 CATTTTCACTTATAC CATCAAC TTCT GTTGATG TTTTTGCAAATACAG TERM 4329 3259399 - 3259342 - R 100 -14.9 -4.48877 | opp_overlap 3259342 3259346, overlap 3259346 TAAATACCCATAAAA TAAATATAGCTAATAAATAACAA TTAGGAAAATCC TTGTTATTTATTAGCTATATTTA TACTTATACAATTTT TERM 4330 3259342 - 3259399 + r 100 -14.9 -2.85909 | opp_overlap 3259342 3259346, overlap 3259346 TAAATACCCATAAAA TAAATATAGCTAATAAATAACAA TTAGGAAAATCC TTGTTATTTATTAGCTATATTTA TACTTATACAATTTT TERM 4331 3259395 - 3259346 - R 100 -11.3 -4.7878 | opp_overlap 3259342 3259346, overlap 3259342 TACCCATAAAATAAA TATAGCTAATAAATAACAA TTAGGAAAATCC TTGTTATTTATTAGCTATA TTTATACTTATACAA TERM 4332 3259346 - 3259395 + r 100 -11.3 -4.1021 | opp_overlap 3259346 3259342, overlap 3259342 TACCCATAAAATAAA TATAGCTAATAAATAACAA TTAGGAAAATCC TTGTTATTTATTAGCTATA TTTATACTTATACAA CLH_3031 3260201 - 3259479 - | glutamine transport ATP-binding protein GlnQ TERM 4333 3259745 - 3259768 + g 82 -8.2 -4.56117 | overlap 3259742 TAACATCTGGTTCCA TAGCTAATGC TCTT GCAATAGCTA TTCTTTGTTTTTGTC CLH_3032 3260847 - 3260188 - | amino acid ABC transporter, amino acid-binding/permease protein CLH_3033 3261765 - 3260929 - | amino acid ABC transporter TERM 4334 3261864 - 3261880 + r 73 -5.3 -4.77759 | opp_overlap 3261864, overlap 3261877 3261878 GCAATAGTAAATGTA TAAAAAT TTA ATTTTTA TTTTTAATAAGTTGT TERM 4335 3262409 - 3262379 - R 100 -10.6 -5.04356 | opp_overlap 3262376 3262379 3262381 CTAAAGAATTAAAAA TAGCAGCTACCA TATCTAT TAGTAGCTGCTA TAATTTATAAATATT TERM 4336 3262379 - 3262409 + r 71 -8.4 -3.0386 | opp_overlap 3262379, overlap 3262376 3262381 CTAAAGAATTAAAAA TAGCAGCTACCA TATCTAT TAGTAGCTGCTA TAATTTATAAATATT CLH_3034 3264556 - 3262445 - | ATP-dependent DNA helicase rep CLH_3035 3267003 - 3264907 - | putative cell division protease FtsH TERM 4337 3266970 - 3266951 - G 88 -6.6 -5.25656 | opp_overlap 3266951 3266955 AAAACTAGTAAAAAA TATATTAC CATT GTAATATA TCCGTTTTTCTTCTT CLH_3036 3267266 - 3267048 - | hypothetical protein TERM 4338 3267292 - 3267342 + r 100 -18.3 -2.64735 | gap 1, opp_overlap 3267299, overlap 3267293 TCCTCTCTTTATTTT GA-CTATATTTCAAGTTATATTTT ATAT AAAATATAACTTGAAATATAGCTC TAATCTAAATAAAAT TERM 4339 3267293 - 3267340 + r 100 -17.6 -2.8655 | opp_overlap 3267299, overlap 3267292 CCTCTCTTTATTTTG ACTATATTTCAAGTTATATTTT ATAT AAAATATAACTTGAAATATAGC TCTAATCTAAATAAA TERM 4340 3267334 - 3267299 - R 100 -15.2 -2.79183 | opp_overlap 3267293 3267292 TTTATTTTGACTATA TTTCAAGTTATATTTT ATAT AAAATATAACTTGAAA TATAGCTCTAATCTA lepB 3267928 - 3267401 - | signal peptidase I lepB 3268513 - 3267995 - | signal peptidase I TERM 4341 3268458 - 3268427 - G 71 -3.8 -5.05505 | opp_overlap 3268428, overlap 3268428 AGTATAAATTAAAAA TTTCCATAGTAACA AACC TATTACTATGGCAC TTATAATTGTTAAAC TERM 4342 3268733 - 3268699 - R 100 -7.5 -5.60689 | gap 1 TTACACAACAAAAAA TGTGTATCAAAATTAA TAAA TCAATTT-GATACACA CTAAGATATATATAT lysA 3270094 - 3268799 - | diaminopimelate decarboxylase TERM 4343 3270150 - 3270129 - R 100 -9.5 -5.26119 | opp_overlap 3270148 TGTTTAAAAACAAAA GTCACAGAT ATTA ATCTGCGAC TGGTAGAGTCTACTT CLH_3040 3270524 - 3270411 - | hypothetical protein CLH_3041 3271349 - 3270675 - | dihydrodipicolinate synthase/N-acetylneuraminate lyase CLH_3042 3271577 - 3271446 - | hypothetical protein CLH_3043 3272943 - 3272182 - | probable N-acetylmuramoyl-L-alanine amidase TERM 4344 3272231 - 3272245 + g 78 -7.2 -4.4648 | ATTGCTTGTTTTACA TTTTCC ATT GGAAAA TTTTCTCCTGGACAT TERM 4345 3272654 - 3272670 + g 81 -2.3 -5.94713 | CTTATACCTAATTCC TTGTTTA AAC TAGGCAA TTTTTTTTGTAAAGT TERM 4346 3273063 - 3273026 - R 100 -11.7 -5.53991 | opp_overlap 3273025 3273022 3273018 3273026, overlap 3272992 TATTGATTAAAAAAA TATGGATAAATACTTTA ATAT TAAAATACTTATCCATA CTTCTTTATACTTTT CLH_3044 3274340 - 3273096 - | membrane associated methyl-accepting chemotaxis protein TERM 4347 3273872 - 3273888 + g 73 -8.1 -3.4214 | overlap 3273875 ATGCAGATAATTCTT CAATAGT ACT ACTATTG TCTTCTATTCCACTT TERM 4348 3275178 - 3275156 - g 80 -4.2 -5.58074 | overlap 3275157 GAAGCACTAAAAAAA CTTTCTTCTA TAC TTGAAGAAAA ACAAAAAGAATTTGG CLH_3045 3274577 - 3275761 + | aspartate aminotransferase TERM 4349 3275793 - 3275767 - T 100 -11 -6.04953 | opp_overlap 3275767 ATATAAATAAAAAAA GGTGATTGTC TTTCAGC GACAATCACC TTTTTTTAGAATAAT TERM 4350 3275767 - 3275793 + T 100 -11 -5.44721 | opp_overlap 3275767 ATATAAATAAAAAAA GGTGATTGTC TTTCAGC GACAATCACC TTTTTTTAGAATAAT CLH_3046 3278814 - 3275860 - | von Willebrand factor type A domain protein TERM 4351 3278430 - 3278444 + g 72 -3.6 -5.28281 | AAGTAACTATATCAA TATCTA AAT TAGGTA TTTTCTTTATTTTAT TERM 4352 3278608 - 3278620 + g 71 -7.7 -3.52459 | AATCTTTATATCCTC TCCAG CAA CTGGA TTCTCTGGAGTTACT CLH_3047 3279427 - 3278891 - | putative prepilin peptidase-dependent CLH_3048 3281816 - 3279444 - | hypothetical protein TERM 4353 3281245 - 3281268 + g 79 -3.3 -5.58522 | opp_overlap 3281256 GTATAATTATAGTTA TTTAGATTT AATTCA GAATCTAAA TTTTTATTTTCTATA CLH_3049 3282745 - 3281828 - | prokaryotic N- methylation motif domain protein CLH_3050 3284027 - 3282756 - | hypothetical protein CLH_3051 3284587 - 3284024 - | fimbrial assembly protein PilN CLH_3052 3285769 - 3284603 - | type IV pilus assembly protein PilM TERM 4354 3286017 - 3285980 - R 89 -12.3 -2.87463 | opp_overlap 3285974 3285985, overlap 3285985 AATTCCCTTTATAGA GTAAAGTGTAAAGCCTA AAAT TAAGCTTTACACTTTAA TGTAAGTTATTCAGT TERM 4355 3286012 - 3285985 - R 100 -12.2 -3.88498 | opp_overlap 3285974 3285985, overlap 3285980 CCTTTATAGAGTAAA GTGTAAAGCCTA AAAT TAAGCTTTACAC TTTAATGTAAGTTAT TERM 4356 3285985 - 3286012 + r 93 -10 -3.86684 | opp_overlap 3285985 3285980, overlap 3285974 CCTTTATAGAGTAAA GTGTAAAGCCTA AAAT TAAGCTTTACAC TTTAATGTAAGTTAT CLH_3053 3286458 - 3286024 - | prepilin peptidase-dependent CLH_3054 3287683 - 3286481 - | bacterial type II secretion system protein F TERM 4357 3287013 - 3286976 - G 74 -8.1 -3.54488 | gap 1, opp_overlap 3286978, overlap 3286974 TGTTTTTAAATAATA TTTTA-TTGCAACAGTAA TTC CTACTATTGCAAGTAAAA TCATAAACCAATGTG CLH_3055 3289480 - 3287792 - | type IV pilus assembly protein TapB TERM 4358 3288026 - 3288053 + g 76 -7.2 -4.39568 | ACAGTAACCACATCC TGAAGATTTATA TAAT TTTAAATCTTCA TTTTCATCTATACCT TERM 4359 3288721 - 3288735 + g 70 -5 -4.74611 | TGTTAACTATTATCC TACCAT CCT GTGGTA TTCTTTTTTCTGCTA TERM 4360 3288763 - 3288780 + g 71 -7.1 -3.72324 | overlap 3288766 CTATATTAAGCCCTG CAAGAAT TTTT ATTCTTG TTATTAATGGACCTA CLH_3056 3290301 - 3289543 - | type IV leader peptidase family protein TERM 4361 3290486 - 3290452 - R 100 -14.6 -6.25741 | opp_overlap 3290461 AAATAATAAAAAAAA GCCCACAAATTAATTA ATT TAATTAATTTGTTGGC CGGGTGCACCACTGA TERM 4362 3290815 - 3290780 - R 100 -10.8 -6.08563 | opp_overlap 3290780 3290783 AATATATAAAAAAAA CAAGTTAATTTAAATT AATT AATCTAAATCAACTTG TTAATATTTATTTAT CLH_3057 3291790 - 3290840 - | putative lipoprotein TERM 4363 3292017 - 3292043 + r 71 -8.3 -3.0634 | opp_overlap 3292017 3292016 3292019, overlap 3292019 3292021 ATGATATTCATTAAT CATATAAATTT CATTT AAATTTATATG TATTACAGTAAAATT CLH_3058 3292444 - 3292130 - | hypothetical protein TERM 4364 3293095 - 3293107 + G 74 -6.3 -4.45083 | GAAACAATGGGATTT GATGT TGA ACATC TTTTATGGATATCAA CLH_3059 3292849 - 3294729 + | methyl-accepting chemotaxis protein TERM 4365 3294838 - 3294782 - T 100 -15.7 -3.10876 | gap 1, opp_overlap 3294782 3294796, overlap 3294796 AATAATATGTTAATA TATGC-ATACAGAAAGTGGACTAAGT AATTGA ACTTAGTCCACTTTTTATATGGCATA TTAATATTAATTAAC TERM 4366 3294782 - 3294838 + T 100 -15.7 -3.42147 | gap 1, opp_overlap 3294782 3294796, overlap 3294796 AATAATATGTTAATA TATGC-ATACAGAAAGTGGACTAAGT AATTGA ACTTAGTCCACTTTTTATATGGCATA TTAATATTAATTAAC TERM 4367 3294796 - 3294823 + T 100 -12.9 -4.9792 | opp_overlap 3294782 3294796, overlap 3294782 ATATGCATACAGAAA GTGGACTAAGT AATTGA ACTTAGTCCAC TTTTTATATGGCATA TERM 4368 3294823 - 3294796 - T 100 -12.9 -4.14392 | opp_overlap 3294796 3294782, overlap 3294782 ATATGCATACAGAAA GTGGACTAAGT AATTGA ACTTAGTCCAC TTTTTATATGGCATA CLH_3060 3295236 - 3295033 - | copper-transporting P-type ATPase CLH_3061 3297828 - 3295399 - | copper-translocating P-type ATPase TERM 4369 3296085 - 3296101 + g 70 -2.3 -5.54894 | overlap 3296087 CTTGCATTAACTTCT TATTTCC CAG GAAAATA TTTTTTTCGTCAATT TERM 4370 3297429 - 3297446 + g 71 -4.1 -5.04597 | overlap 3297417 TTTCAAGTTTGTAAC CTGCTTT TTCT ACAGCAG TTTTTATATCTGAAT TERM 4371 3297881 - 3297896 + r 70 -6.2 -4.29153 | opp_overlap 3297880, overlap 3297886 3297889 TATATGTTTATATAT CTTTCT ACTT AGAAAG TATTTTTTCTAATAC TERM 4372 3297886 - 3297898 + r 77 -4.9 -5.33785 | opp_overlap 3297880, overlap 3297881 3297889 GTTTATATATCTTTC TACTT AGA AAGTA TTTTTTCTAATACTT CLH_3062 3298151 - 3297885 - | hypothetical protein TERM 4373 3298166 - 3298180 + r 72 -8.5 -3.28033 | opp_overlap 3298158, overlap 3298164 3298162 TATTTAATCCTCCCA CCCCC GTGGA GGGGG TATGTATTTGTATTT TERM 4374 3298486 - 3298449 - R 100 -14.5 -6.12458 | opp_overlap 3298449 TAAAAAAACAAAAAA TACCTTGATAAGTTTAG TATT CTAAATTTATCAAGGTA TTATTCTTATAATTT TERM 4375 3298449 - 3298486 + r 100 -16.7 -4.07515 | opp_overlap 3298449 TAAAAAAACAAAAAA TACCTTGATAAGTTTAG TATT CTAAATTTATCAAGGTA TTATTCTTATAATTT CLH_3063 3299680 - 3298502 - | thermostable carboxypeptidase 1 TERM 4376 3299858 - 3299868 + G 71 -4 -5.0916 | ATTAATGTAGGTGAA TTAG CTC CTAA TTTTTCTCTTAAAGG CLH_3064 3299840 - 3300292 + | putative peroxiredoxin bcp TERM 4377 3300359 - 3300390 + T 100 -8.9 -5.38047 | opp_overlap 3300351 3300361, overlap 3300361 CAAATACTAATTTAA AATTATAGCTGAC AATAAA GTCAGCTATAATA TTTTTTATATAGATC TERM 4378 3300388 - 3300361 - T 100 -11.5 -4.31688 | opp_overlap 3300359 3300361, overlap 3300351 AATACTAATTTAAAA TTATAGCTGAC AATAAA GTCAGCTATAA TATTTTTTATATAGA TERM 4379 3300361 - 3300388 + T 100 -11.5 -4.31943 | opp_overlap 3300351 3300361, overlap 3300359 AATACTAATTTAAAA TTATAGCTGAC AATAAA GTCAGCTATAA TATTTTTTATATAGA CLH_3065 3301158 - 3300379 - | nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase TERM 4380 3301269 - 3301242 - R 100 -10.8 -5.4251 | opp_overlap 3301242 TTTACAGATAAAAAA TACCTTGAATTA AGTA CAATTCAAGGTA TTTCAAACTTATGAA TERM 4381 3301242 - 3301269 + r 89 -10.1 -3.62591 | opp_overlap 3301242 TTTACAGATAAAAAA TACCTTGAATT AAGTAC AATTCAAGGTA TTTCAAACTTATGAA CLH_3066 3304379 - 3301278 - | putative cell wall anchor domain protein CLH_3067 3304892 - 3304446 - | hypothetical protein TERM 4382 3304702 - 3304712 + g 71 -2.6 -5.46629 | TTACTACTCATATTC TTAT TAA ATAA TTTTTTTAAAGTATT CLH_3068 3305298 - 3304918 - | hypothetical protein CLH_3069 3305607 - 3305341 - | hypothetical protein TERM 4383 3305541 - 3305568 + g 79 -3.6 -5.626 | gap 1, overlap 3305543 ATAATTTATTGCATT CA-GGACATAA CTCTTTT TTATGTCCATG TTTTTTTCTGCAATA TERM 4384 3305689 - 3305708 + r 91 -10.8 -3.52941 | opp_overlap 3305687 GTTGTGTTAAAATTG GGAGGATT ATTT AATCCTCC TTGTAATTAAAATTT CLH_3070 3307550 - 3305865 - | ABC transporter, ATP-binding/permease protein TERM 4385 3307355 - 3307378 + g 72 -6.2 -4.36127 | opp_overlap 3307355 AGATAATCATAATAA TAATTGCATT TTTG AATGTAATTA TTTTAACTTCTTCAA CLH_3071 3309305 - 3307554 - | multidrug resistance protein 1 TERM 4386 3308877 - 3308859 - G 70 -6 -4.31608 | overlap 3308856 3308860 AATAAATATAAATAA TGTGATTG GAG CAATCACT GCATAAAAGAATTGG TERM 4387 3308876 - 3308860 - G 79 -9.5 -3.16525 | overlap 3308859 3308856 ATAAATATAAATAAT GTGATTG GAG CAATCAC TGCATAAAAGAATTG TERM 4388 3309362 - 3309375 + r 73 -2.5 -5.68023 | opp_overlap 3309362 CATTAATATCAACAG TATAT TATC ATATA TTTTTTTCATTGTAA TERM 4389 3309572 - 3309521 - R 100 -15.8 -4.72986 | gap 1, opp_overlap 3309521 3309571 TACTTCTACGAAAAA GAACCCTAAATATTAAATGATAT ATTTCTA ATATC-TTTAATATTTAGGGTTC TTTTTAAGATTACTA TERM 4390 3309521 - 3309572 + r 100 -15.8 -4.67904 | gap 1, opp_overlap 3309521, overlap 3309571 TACTTCTACGAAAAA GAACCCTAAATATTAAATGATAT ATTTCTA ATATC-TTTAATATTTAGGGTTC TTTTTAAGATTACTA CLH_3072 3311187 - 3309601 - | lipase TERM 4391 3311242 - 3311283 + r 84 -9.1 -4.19947 | gap 1, opp_overlap 3311237 3311248, overlap 3311246 3311248 AGCAAAAACATTATT TTATA-AGTTAGAGAGAAGT TTA ATTTCTCTCTAACTCTTTAA TTTCTAGTTGTTTTC TERM 4392 3311246 - 3311278 + r 100 -11.5 -4.17789 | opp_overlap 3311237 3311248, overlap 3311242 3311248 AAAACATTATTTTAT AAGTTAGAGAGAAGT TTA ATTTCTCTCTAACTC TTTAATTTCTAGTTG TERM 4393 3311276 - 3311248 - R 95 -11.9 -3.34787 | opp_overlap 3311246 3311242 3311248 AACATTATTTTATAA GTTAGAGAGAAGT TTA ATTTCTCTCTAAC TCTTTAATTTCTAGT TERM 4394 3311248 - 3311276 + r 100 -14.1 -3.67003 | opp_overlap 3311248, overlap 3311246 3311242 AACATTATTTTATAA GTTAGAGAGAAGT TTA ATTTCTCTCTAAC TCTTTAATTTCTAGT CLH_3073 3312627 - 3311287 - | putative lipase TERM 4395 3311790 - 3311814 + g 93 -5.2 -5.84381 | gap 1 TTAATACACGTCCAA GATAATGAAGT TGTG ACT-CATTATC TTTTTTTGTTAATCC TERM 4396 3313675 - 3313636 - R 75 -8.8 -3.2756 | opp_overlap 3313662 3313667, overlap 3313634 3313632 3313637 3313662 AACCTCAATAATATA CGCAAGCTAATCAAAAAT TTAT ATCATTAATTAGCTTGCA ACAATCTATTTAATA TERM 4397 3313674 - 3313637 - R 78 -10.1 -2.55813 | opp_overlap 3313662 3313667, overlap 3313636 3313634 3313632 3313662 ACCTCAATAATATAC GCAAGCTAATCAAAAAT TTAT ATCATTAATTAGCTTGC AACAATCTATTTAAT CLH_3074 3315073 - 3313715 - | lipase 2 TERM 4398 3315952 - 3315922 - R 100 -9.8 -5.63103 | opp_overlap 3315923 3315929, overlap 3315923 3315929 CCCTAATTAAAAAAA TGAAAAAGCGTGGA TAA TCCACGCTTTTTTC TTATAATATAAAATA TERM 4399 3315951 - 3315923 - R 100 -13.3 -3.96777 | opp_overlap 3315923 3315929, overlap 3315922 3315929 CCTAATTAAAAAAAT GAAAAAGCGTGGA TAA TCCACGCTTTTTT CTTATAATATAAAAT TERM 4400 3315923 - 3315952 + r 100 -13.1 -3.47078 | gap 1, opp_overlap 3315923 3315922 3315929, overlap 3315929 CCTAATTAAAAAAAT G-AAAAAGCGTGGA TAA TCCACGCTTTTTTC TTATAATATAAAATA TERM 4401 3315945 - 3315929 - R 100 -12.3 -5.31158 | opp_overlap 3315923 3315929, overlap 3315923 3315922 TAAAAAAATGAAAAA GCGTGGA TAA TCCACGC TTTTTTCTTATAATA TERM 4402 3315929 - 3315945 + r 100 -12.3 -5.58179 | opp_overlap 3315929 3315923 3315922, overlap 3315923 TAAAAAAATGAAAAA GCGTGGA TAA TCCACGC TTTTTTCTTATAATA CLH_3075 3316747 - 3315953 - | hypothetical membrane protein TERM 4403 3316977 - 3317014 + r 90 -12.3 -2.99813 | opp_overlap 3316977, overlap 3316970 3316979 AAATTAATATAAAAA CAGTAGCTAATTTTATT TTCA GATAAAACTAGCTACTG TCTATAATATATAAT TERM 4404 3317014 - 3316977 - R 100 -13.8 -5.16206 | opp_overlap 3316977 3316970 3316979 AAATTAATATAAAAA CAGTAGCTAATTTTAT TTTCAG ATAAAACTAGCTACTG TCTATAATATATAAT TERM 4405 3316979 - 3317012 + r 74 -9.1 -3.04983 | opp_overlap 3316977, overlap 3316977 3316970 ATTAATATAAAAACA GTAGCTAATTTTATT TTCA GATAAAACTAGCTAC TGTCTATAATATATA CLH_3076 3317842 - 3317078 - | RNA pseudouridine synthase family protein CLH_3077 3318141 - 3317935 - | transcription regulator, Cro/CI family -related protein CLH_3078 3318654 - 3318160 - | hypothetical protein TERM 4406 3318744 - 3318724 - R 79 -7.1 -4.62069 | opp_overlap 3318719 3318724 TTGCTACTTTAAAAA TTATATTTA TAG TAAATATAA TTTTCTTTAAACATA TERM 4407 3318724 - 3318744 + r 81 -7.1 -4.87803 | opp_overlap 3318724, overlap 3318719 TTGCTACTTTAAAAA TTATATTTA TAG TAAATATAA TTTTCTTTAAACATA TERM 4408 3318797 - 3318761 - R 95 -11.2 -3.81488 | TTTCTTTAAACATAA TTTAGCCTATCACAAT TCTTC ATTGTAATAGACTAAA ACTAAATATATATTA CLH_3079 3319033 - 3318818 - | putative lipoprotein TERM 4409 3319337 - 3319313 - R 81 -7.3 -4.84527 | opp_overlap 3319309 3319313 TCCATATACCAAAAA GGATAGTAA AATCAAA TTACTATCC TTAATTGCTTTATAT CLH_3080 3320250 - 3319432 - | medium FAD-binding subunit of molybdenum enzyme CLH_3081 3320720 - 3320244 - | putative xanthine dehydrogenase, iron-sulfur binding subunit CLH_3082 3322851 - 3320722 - | putative xanthine dehydrogenase, molybdenum-binding subunit TERM 4410 3321374 - 3321348 - G 71 -8 -3.15212 | opp_overlap 3321345 AACTACGAGAGGCAA CTGTAGGACCTG AAT CAGGTACTACAT CAGTATCTGGATACT TERM 4411 3322960 - 3322925 - R 93 -7 -5.80364 | opp_overlap 3322925 3322938, overlap 3322927 ATTGCAACAAAAAAA TAGCATCAAATTCTTC TTCA AAAGAACTTGGTGCCA TTTATCTAAACACTA TERM 4412 3322958 - 3322927 - R 77 -7.4 -4.54306 | opp_overlap 3322925 3322938, overlap 3322925 TGCAACAAAAAAATA GCATCAAATTCTTC TTCA AAAGAACTTGGTGC CATTTATCTAAACAC CLH_3083 3323899 - 3322973 - | transcriptional regulator, LysR family protein TERM 4413 3323847 - 3323833 - G 100 -10 -4.63184 | opp_overlap 3323832 3323831 AACCTATTTGAAAAA GTGGAG ATA CTCCAC CATTATCATCTATCT TERM 4414 3324086 - 3324059 - R 100 -5.7 -6.28967 | overlap 3324046 TATAAACAAAAAAAA TCCCAACTAGA TAAATT TCTAATTAGGA TTTCTATTACTTAAT rumA 3325476 - 3324109 - | 23S rRNA (uracil-5-)-methyltransferase RumA CLH_3085 3326063 - 3325707 - | hypothetical protein TERM 4415 3325817 - 3325806 - G 70 -2.2 -5.39221 | AGAAGAATTAAAAAA GCAA TTTA CTGC CTGACAATTAATTTG TERM 4416 3326203 - 3326186 - R 100 -6.9 -6.08563 | overlap 3326187 AATATATAAAAAAAA GGCACCC CTAG GGGTGCA AATAGAGAATCAGTT TERM 4417 3326202 - 3326187 - R 95 -10.4 -4.21477 | overlap 3326186 ATATATAAAAAAAAG GCACCC CTAG GGGTGC AAATAGAGAATCAGT TERM 4418 3326409 - 3326368 - R 93 -9 -4.76644 | opp_overlap 3326368 3326378 3326403, overlap 3326378 AATATTTAGTAAAAA GAATAAAAAAGCTCTCGA ATAAAA TCGAAAGCCTTTTTATTA TAAATTTATTATTCG TERM 4419 3326399 - 3326378 - R 90 -6.6 -5.80727 | opp_overlap 3326368 3326378, overlap 3326368 AAAAAGAATAAAAAA GCTCTCGA ATAAAA TCGAAAGC CTTTTTATTATAAAT pyk 3327833 - 3326418 - | pyruvate kinase pfkA 3328855 - 3327893 - | 6-phosphofructokinase CLH_3088 3332989 - 3329381 - | DNA polymerase III subunit alpha TERM 4420 3329517 - 3329527 + g 72 -6.8 -4.14615 | opp_overlap 3329515 3329511 3329517 GCAAAAATATAGATA GGTG TAT CACC TTTATAATCTTTTAT TERM 4421 3332422 - 3332441 + g 73 -8 -3.4926 | overlap 3332425 CCATGCCATGATTTT GAATTTCT AAAT AGAAATTC TCTTTAAATATTTCT TERM 4422 3333584 - 3333554 - R 100 -13.5 -4.21945 | opp_overlap 3333554 ACTAAGATAGAGAAA GCTACGTTAGATA CAAAT CATCTAACGTAGC TTTTATTAAATTTAT TERM 4423 3333554 - 3333584 + r 100 -12.8 -4.76213 | opp_overlap 3333554 ACTAAGATAGAGAAA GCTACGTTAGAT ACAAATC ATCTAACGTAGC TTTTATTAAATTTAT CLH_3089 3333885 - 3333601 - | stress responsive alpha-beta barrel domain protein CLH_3090 3334849 - 3333902 - | hypothetical protein CLH_3091 3336226 - 3334865 - | transporter CLH_3092 3337107 - 3336223 - | hypothetical protein TERM 4424 3337478 - 3337519 + r 70 -6 -4.20712 | opp_overlap 3337467 3337484, overlap 3337484 3337486 TAAATTTCTAAAAAT TAAAAATAGCTCAAAAGC ACTAAA GCTCTTGAGCTACTTATA TTTTAAAATATTATA TERM 4425 3337484 - 3337513 + r 78 -9.4 -2.97181 | opp_overlap 3337484, overlap 3337478 3337486 TCTAAAAATTAAAAA TAGCTCAAAAGC ACTAAA GCTCTTGAGCTA CTTATATTTTAAAAT TERM 4426 3337513 - 3337484 - R 100 -11.6 -5.18355 | opp_overlap 3337478 3337484 3337486 TCTAAAAATTAAAAA TAGCTCAAAAGC ACTAAA GCTCTTGAGCTA CTTATATTTTAAAAT murB 3338452 - 3337538 - | UDP-N-acetylenolpyruvoylglucosamine reductase uvrC 3340414 - 3338525 - | excinuclease ABC, C subunit TERM 4427 3338966 - 3338987 + g 80 -8.9 -3.63968 | opp_overlap 3338965 3338981, overlap 3338981 CATCATAATTAAATC TGGAAAATT AGAG AATTTTCCA TTTGAAAATTTAAGA TERM 4428 3339950 - 3339960 + g 82 -2.6 -6.11243 | CTTTTTACATGTTCT TATT GGA AATA TTTTTTTTATTAAGT TERM 4429 3340482 - 3340442 - R 95 -10.9 -3.65046 | opp_overlap 3340442 CCTGTATTCTAATAA TGTTGATATTATAATAT ACTATCG ATATTACAATATCAACA TTTAGTTAACGCTAT TERM 4430 3340442 - 3340482 + r 81 -8.7 -3.91352 | opp_overlap 3340442 CCTGTATTCTAATAA TGTTGATATTATAATAT ACTATCG ATATTACAATATCAACA TTTAGTTAACGCTAT TERM 4431 3340483 - 3340540 + r 72 -8.2 -3.18404 | gap 1, opp_overlap 3340483 3340492, overlap 3340488 3340492 ATTACAATATCAACA TTTAGTTAACGCTATGTCTAAAATAAT ATTAC ATTATAC-AGACATAGCGTTAGTTAAA TATATTCAATTTTAA CLH_3095 3342114 - 3340630 - | penicillin-binding protein CLH_3096 3343307 - 3342117 - | stage V sporulation protein E CLH_3097 3343802 - 3343359 - | FHA-domain containing secreted protein TERM 4432 3344109 - 3344063 - R 72 -6.3 -4.43392 | gap 1, opp_overlap 3344064 3344067, overlap 3344060 3344067 3344068 TTAAAACTAAAAGAA TTAAC-TTCTAAAGAATAATTT ACCT AAATTATTCTTTAGAAAGATAT TTTTTACAAATTGAT TERM 4433 3344064 - 3344108 + r 100 -9.8 -5.055 | gap 1, opp_overlap 3344063 3344060 3344067 3344068, overlap 3344067 TAAAACTAAAAGAAT TAAC-TTCTAAAGAATAATTT ACCT AAATTATTCTTTAGAAAGATA TTTTTTACAAATTGA TERM 4434 3344104 - 3344067 - R 100 -13.9 -3.71308 | opp_overlap 3344064 3344067, overlap 3344063 3344060 3344068 AACTAAAAGAATTAA CTTCTAAAGAATAATTT ACCT AAATTATTCTTTAGAAA GATATTTTTTACAAA TERM 4435 3344067 - 3344105 + r 90 -11.5 -3.08056 | gap 1, opp_overlap 3344067 3344063 3344060 3344068, overlap 3344064 AACTAAAAGAATTAA C-TTCTAAAGAATAATTT ACCT AAATTATTCTTTAGAAAG ATATTTTTTACAAAT TERM 4436 3344103 - 3344068 - R 100 -15.2 -2.81158 | opp_overlap 3344067 3344064, overlap 3344067 3344063 3344060 ACTAAAAGAATTAAC TTCTAAAGAATAATTT ACCT AAATTATTCTTTAGAA AGATATTTTTTACAA uvrA 3346998 - 3344176 - | excinuclease ABC, A subunit TERM 4437 3346542 - 3346559 + g 70 -5.7 -4.38712 | CACGAACTATTGGAG CTAAAAT TTGA ATTTTAG TTTTATCCCCATAAG uvrB 3348976 - 3347003 - | excinuclease ABC, B subunit TERM 4438 3349365 - 3349338 - R 76 -4.2 -5.30155 | gap 1, opp_overlap 3349338 TTATTAATGAAAAAA GCCAGAAAATTCA ATA CGAA-TATCTGGC TTTATATTATATGAT TERM 4439 3349416 - 3349433 + r 76 -2.1 -5.85178 | AATATTTTAGTTCGA TTTTAAT TAAC ATTAGAA TTTTTTTTAGCTCTT CLH_3100 3350801 - 3349512 - | hypothetical protein TERM 4440 3350633 - 3350672 + g 73 -8 -3.42395 | opp_overlap 3350633, overlap 3350632 3350637 CAATTTGTGATAAAG TTAATTCTAGGGGGGTGT TTAT ATTATCCCCTAGAATTAA TCTTTGCATCATAAC CLH_3101 3352071 - 3350812 - | carboxyl-terminal protease TERM 4441 3352323 - 3352381 + r 82 -10.3 -2.8805 | gap 1, opp_overlap 3352334 3352340, overlap 3352334 3352340 TTAATATATTTTACT TATTTATATTATTAGAATAAATAAAGTA TTAA TACTATATTTATTCTAATAAT-TAAAAA TATCTAAAGAATACT TERM 4442 3352334 - 3352371 + r 86 -11.7 -2.7317 | opp_overlap 3352334 3352340, overlap 3352323 3352340 TACTTATTTATATTA TTAGAATAAATAAAGTA TTAA TACTATATTTATTCTAA TAATTAAAAATATCT TERM 4443 3352371 - 3352334 - R 86 -11.7 -2.64933 | opp_overlap 3352334 3352323 3352340, overlap 3352340 TACTTATTTATATTA TTAGAATAAATAAAGTA TTAA TACTATATTTATTCTAA TAATTAAAAATATCT CLH_3102 3353337 - 3352447 - | cell-division protein TERM 4444 3353242 - 3353278 + g 71 -4.5 -4.87389 | opp_overlap 3353244 3353247, overlap 3353247 AACAAAGAAGGTTAT AAGTACTGTAAGTATTG AGG CAAAACTTATAGTTCTA TTTCTTTTTAAACTA TERM 4445 3353247 - 3353273 + g 75 -7.4 -4.11447 | opp_overlap 3353247 3353244, overlap 3353242 AGAAGGTTATAAGTA CTGTAAGTATTG AGG CAAAACTTATAG TTCTATTTCTTTTTA ftsE 3354013 - 3353327 - | cell division ATP-binding protein FtsE CLH_3104 3354982 - 3354131 - | transporter CLH_3105 3354939 - 3355052 + | hypothetical protein TERM 4446 3355371 - 3355344 - TR 100 -10.8 -6.34616 | gap 1 TTAAAATAAAAAAAA GGTAGCAATAACT TAA AGT-ATTGCTACC TAATAATAAAGCTAA CLH_3106 3356331 - 3355387 - | transketolase, pyridine binding domain TERM 4447 3356125 - 3356113 - G 72 -6.3 -4.27474 | AAACGTACTAACAAA TGGAA CTT TTCCA CAAGTTGAAAGACCT CLH_3107 3357155 - 3356331 - | transketolase, thiamine diphosphate binding domain TERM 4448 3356945 - 3356935 - G 72 -6.8 -4.09822 | opp_overlap 3356934 AATGCACTATATAAA GCTG GTG CAGC ATGTCCTTTTGATAA TERM 4449 3357301 - 3357359 + r 93 -10.2 -3.98859 | gap 1, opp_overlap 3357310, overlap 3357304 3357305 3357308 CATATTAGCTTCTTA TGTGA-TATACTTTTTGTTAATAATCA TAATCT TGATTATTAACAAAAAGTATAGTCTAA TATTTTTCAATTAAA TERM 4450 3357304 - 3357356 + r 100 -16.3 -3.03505 | gap 1, opp_overlap 3357310, overlap 3357301 3357305 3357308 ATTAGCTTCTTATGT GA-TATACTTTTTGTTAATAATCA TAATCT TGATTATTAACAAAAAGTATAGTC TAATATTTTTCAATT TERM 4451 3357305 - 3357354 + r 100 -15.6 -3.05832 | opp_overlap 3357310, overlap 3357304 3357301 3357308 TTAGCTTCTTATGTG ATATACTTTTTGTTAATAATCA TAATCT TGATTATTAACAAAAAGTATAG TCTAATATTTTTCAA TERM 4452 3357308 - 3357351 + r 100 -17.3 -2.73364 | opp_overlap 3357310, overlap 3357305 3357304 3357301 GCTTCTTATGTGATA TACTTTTTGTTAATAATCA TAATCT TGATTATTAACAAAAAGTA TAGTCTAATATTTTT TERM 4453 3357349 - 3357310 - R 100 -15.5 -2.89564 | opp_overlap 3357308 3357305 3357304 3357301 TTCTTATGTGATATA CTTTTTGTTAATAATCA TAATCT TGATTATTAACAAAAAG TATAGTCTAATATTT TERM 4454 3357416 - 3357396 - R 100 -9.8 -5.71712 | TTTTATACAAAAAAA GAGTAGAG ACTTA CTCTACTC CAATATAATTTATTT CLH_3108 3357783 - 3357430 - | endoribonuclease EndoA CLH_3109 3358047 - 3357793 - | uncharcterized small conserved protein, YhhG family CLH_3110 3359044 - 3358415 - | putative membrane associated protein TERM 4455 3359101 - 3359122 + r 75 -7.5 -3.9901 | AAAGTTTTTTTATTT TATTCTTAA TTAT TTAAGAATA TTATTAATTTTAGTT CLH_3111 3360609 - 3359110 - | YjeF family protein acpS 3360982 - 3360611 - | holo-(acyl-carrier-protein) synthase CLH_3113 3361380 - 3361057 - | hypothetical protein TERM 4456 3361877 - 3361836 - R 100 -11.3 -5.39905 | gap 1, opp_overlap 3361836 ATTAAACAATAAAAA TAAACCACCCT-AAATAGAA TGA TTCTATTTTAAGATGGTTTA TTTTTTCCCATTTTA TERM 4457 3361836 - 3361877 + r 83 -6.9 -5.15117 | gap 1, opp_overlap 3361836 ATTAAACAATAAAAA TAAACCACCCT-AAATAGAA TGA TTCTATTTTAAGATGGTTTA TTTTTTCCCATTTTA CLH_3114 3362673 - 3362326 - | single-strand binding protein family CLH_3115 3363593 - 3362745 - | YihY family protein TERM 4458 3363355 - 3363338 - G 70 -4.9 -4.7254 | ACTGTTTATCAAAAA CTTCAAC TATT ATTGAAG CAGTCAAATCAAACA TERM 4459 3363793 - 3363819 + r 72 -7.6 -3.49618 | opp_overlap 3363809, overlap 3363795 ATATCTTTATTCTCA TATTTTATAGAT AAA ATTTATAAAATA TTCATTATATAAAAA TERM 4460 3363913 - 3363875 - R 100 -9.9 -4.64676 | CTATTTTCAACAAAA TTATAGGACTTAACACT TAATC AGCATTAAATCCTATAA TAAACTAAACTTTAA CLH_3116 3365262 - 3363946 - | UDP-glucose 6-dehydrogenase CLH_3117 3365853 - 3365263 - | hexapeptide transferase family protein CLH_3118 3367048 - 3365867 - | erythromycin biosynthesis sensory transduction protein eryC1 TERM 4461 3367335 - 3367363 + r 72 -6.3 -4.41348 | opp_overlap 3367335 TATTTTTTGTATAAA TATAATAAAATAT TAC ATAATTTATTATA TTTCTTTAAAAAACA TERM 4462 3367413 - 3367377 - R 100 -15.5 -5.0133 | opp_overlap 3367377 TATTTCTTTAAAAAA CACCTACTTGAATAAAT ATA ATTCATTCAAGTAAGTG TTTAATTAATCTCTT TERM 4463 3367377 - 3367413 + r 100 -11.1 -3.99955 | opp_overlap 3367377 TATTTCTTTAAAAAA CACCTACTTGAATAAAT ATA ATTCATTCAAGTAAGTG TTTAATTAATCTCTT CLH_3119 3368036 - 3367443 - | hypothetical protein CLH_3120 3368656 - 3368901 + | transcriptional regulator, AbrB family TERM 4464 3368918 - 3368965 + T 100 -17.4 -4.15061 | opp_overlap 3368925 3368929, overlap 3368920 3368925 3368929 ACCTAATAATACTTA TATAAAATAAACAGCACCTCTG AATT TAGAGGTGCTGTTTATTTCATG TTTATATATCAATTG TERM 4465 3368920 - 3368963 + T 100 -17.8 -3.66398 | opp_overlap 3368925 3368929, overlap 3368918 3368925 3368929 CTAATAATACTTATA TAAAATAAACAGCACCTCTG AATT TAGAGGTGCTGTTTATTTCA TGTTTATATATCAAT TERM 4466 3368958 - 3368925 - T 100 -17 -4.56961 | opp_overlap 3368920 3368918 3368925 3368929, overlap 3368929 AATACTTATATAAAA TAAACAGCACCTCT GAATTT AGAGGTGCTGTTTA TTTCATGTTTATATA TERM 4467 3368925 - 3368958 + T 100 -17.7 -4.06185 | opp_overlap 3368925 3368929, overlap 3368920 3368918 3368929 AATACTTATATAAAA TAAACAGCACCTCTG AATT TAGAGGTGCTGTTTA TTTCATGTTTATATA TERM 4468 3368929 - 3368954 + T 100 -14.1 -4.59293 | opp_overlap 3368929 3368925, overlap 3368925 3368920 3368918 CTTATATAAAATAAA CAGCACCTCTG AATT TAGAGGTGCTG TTTATTTCATGTTTA TERM 4469 3368954 - 3368929 - T 100 -13.4 -4.83243 | opp_overlap 3368925 3368920 3368918 3368929, overlap 3368925 CTTATATAAAATAAA CAGCACCTCT GAATTT AGAGGTGCTG TTTATTTCATGTTTA CLH_3121 3369812 - 3368967 - | hypothetical protein TERM 4470 3369308 - 3369298 - G 76 -4 -5.42131 | GAATTATATAAAAAA GATA ATG TATC AAGCAATCTATGTGG CLH_3122 3370566 - 3369814 - | SAM-dependent methyltransferase TERM 4471 3370124 - 3370137 + g 70 -6.7 -3.92641 | CATAAAACTTCATGT CTTGC AATA GCAAG TTTATCGCTAGGATT TERM 4472 3370798 - 3370759 - R 79 -8.9 -3.5947 | opp_overlap 3370764 3370792 3370794, overlap 3370764 AATTTTTATATACAA CAAAATAAGACTAGACA ATTATA TATCTAGCCTTATTTTA AATATTATATATTAT TERM 4473 3370793 - 3370764 - R 78 -6.6 -4.87592 | opp_overlap 3370764 3370792, overlap 3370759 TTATATACAACAAAA TAAGACTAGACA ATTATA TATCTAGCCTTA TTTTAAATATTATAT CLH_3123 3372084 - 3370810 - | SagA protein TERM 4474 3371210 - 3371232 + g 73 -4.6 -5.17576 | overlap 3371210 GGAGTGTTAGCTGAA GCTGCTGCTG ATG CCGCTGCTGC TTTTTTCGCTTCCTC TERM 4475 3372093 - 3372107 + H 85 -10 -3.14404 | TCCTCATCCAATGCC GGTTCG TTT CGAACC TTCCCTCCTTCATAT TERM 4476 3372397 - 3372385 - H 74 -4.9 -5.13344 | opp_overlap 3372385 ATAGTAACACAAAAA TCAAT AAA ATTGA ATTCTTGACATAAGT TERM 4477 3372458 - 3372495 + H 76 -9.6 -2.88667 | gap 1, opp_overlap 3372468, overlap 3372468 CACTATTTAATACAA TATAAAAAAACTTAAGG CATAC CCTTAAGTTTTTTT-TA TAACTTTTTATAAAA TERM 4478 3372486 - 3372468 - H 100 -7.5 -5.84432 | opp_overlap 3372458 3372468 TACAATATAAAAAAA CTTAAGG CATAC CCTTAAG TTTTTTTTATAACTT TERM 4479 3372468 - 3372486 + H 100 -7.5 -5.97575 | opp_overlap 3372468, overlap 3372458 TACAATATAAAAAAA CTTAAGG CATAC CCTTAAG TTTTTTTTATAACTT CLH_3124 3372526 - 3373170 + | haloacid dehalogenase, IA family protein TERM 4480 3373331 - 3373369 + T 83 -11.4 -2.62642 | gap 1, opp_overlap 3373331 3373339, overlap 3373339 CTATAATTTCATATA CAA-AAAAAGTGGCTTT TACAAT AAAGCCACTTTTTATTG ATTATAAATAGTAAT TERM 4481 3373369 - 3373331 - T 85 -11.4 -2.92653 | gap 1, opp_overlap 3373331 3373339, overlap 3373339 CTATAATTTCATATA CAA-AAAAAGTGGCTTT TACAAT AAAGCCACTTTTTATTG ATTATAAATAGTAAT TERM 4482 3373360 - 3373339 - T 100 -8.8 -5.76633 | opp_overlap 3373331 3373339, overlap 3373331 TCATATACAAAAAAA GTGGCTTT TACAAT AAAGCCAC TTTTTATTGATTATA TERM 4483 3373339 - 3373360 + T 100 -8.8 -5.2204 | opp_overlap 3373339 3373331, overlap 3373331 TCATATACAAAAAAA GTGGCTTT TACAAT AAAGCCAC TTTTTATTGATTATA TERM 4484 3373378 - 3373391 + T 79 -3.9 -5.75342 | opp_overlap 3373378 TTTATTGATTATAAA TAGTA ATAT TACTA TTTTTTTTCAACACC CLH_3125 3374132 - 3373389 - | foldase protein PrsA ung 3374263 - 3374940 + | uracil-DNA glycosylase CLH_3127 3375363 - 3375166 - | hypothetical protein CLH_3128 3375750 - 3376169 + | hypothetical protein TERM 4485 3376179 - 3376212 + T 80 -3.3 -5.8187 | gap 1 GTTTAATATTTTTAT GAGTATAGA-GTGGTT TTA AAACATATCTATGCTC TTTTTTTATTGGCTA TERM 4486 3376419 - 3376401 - T 100 -7.5 -6.25741 | opp_overlap 3376401 AAATAATAAAAAAAA CACTAAC TATTT GTTAGTG TTTTTTTGGTGGCTC TERM 4487 3376401 - 3376419 + T 100 -7.5 -5.53991 | opp_overlap 3376401 AAATAATAAAAAAAA CACTAAC TATTT GTTAGTG TTTTTTTGGTGGCTC CLH_3131 3377350 - 3376859 - | molybdopterin biosynthesis mog protein TERM 4488 3377562 - 3377608 + r 100 -15.6 -3.98204 | opp_overlap 3377553 3377566, overlap 3377566 TAATTATATTTTTAA TAAAGATAAGCTAAAGAATTTA ATT TTAACTCTTTAGCTTATCTTTA TTTATGACTATGTTT TERM 4489 3377604 - 3377566 - R 100 -14.2 -4.17556 | opp_overlap 3377562 3377566 TATATTTTTAATAAA GATAAGCTAAAGAATTTA ATT TTAACTCTTTAGCTTATC TTTATTTATGACTAT TERM 4490 3377566 - 3377604 + r 100 -12 -4.58085 | opp_overlap 3377566, overlap 3377562 TATATTTTTAATAAA GATAAGCTAAAGAATTTA ATT TTAACTCTTTAGCTTATC TTTATTTATGACTAT CLH_3132 3378242 - 3377787 - | transcriptional regulator, AraC family TERM 4491 3378308 - 3378318 + r 73 -2.6 -5.75599 | opp_overlap 3378287 3378285, overlap 3378299 3378310 GACATCTATGTGTCA TATT ATA AATA TTTTTTTATAATTTC CLH_3133 3379206 - 3378310 - | DeoR-family transcriptional regulator TERM 4492 3378801 - 3378817 + g 71 -3.8 -5.03227 | AGTTAATAATACTAT CTTTAA TAATT TTAAAG TTTTCTTTGTCCTCT TERM 4493 3379352 - 3379330 - R 100 -11.4 -5.64873 | TGTAATAATAAAAAA GCGTCTAGTT GTG AACTAGACAC TTACAAAAATTATTC CLH_3134 3379913 - 3379362 - | putative protein of unknown function TERM 4494 3380156 - 3380189 + r 73 -2.7 -5.74684 | opp_overlap 3380159, overlap 3380131 3380157 3380159 AGTTTTTAGAATGAT TAATTTTTTTGTTAT ATTT ATAATAAAAAAATGG TTTTTCTTTTTCTTC CLH_3135 3380693 - 3380139 - | acetyltransferase, GNAT family TERM 4495 3381420 - 3381432 + G 71 -7.7 -3.52762 | overlap 3381416 TTCATTAGTTGTTTA TCCAG CGG CTGGA TTAATTGATTATTTT CLH_3136 3380827 - 3381564 + | NAD-dependent deacetylase TERM 4496 3381599 - 3381572 - T 100 -10.1 -5.49234 | opp_overlap 3381572 ATATTTAAGAAAAAA GACAATAGAAT AAAATA ATTCTATTGTC TTTTTAAAACTATTA TERM 4497 3381572 - 3381599 + T 100 -10.1 -4.62302 | opp_overlap 3381572 ATATTTAAGAAAAAA GACAATAGAAT AAAATA ATTCTATTGTC TTTTTAAAACTATTA CLH_3137 3382664 - 3381747 - | lipoate-protein ligase A lpdA 3384357 - 3382657 - | dihydrolipoyl dehydrogenase TERM 4498 3384377 - 3384424 + r 72 -3.7 -5.4433 | gap 1, opp_overlap 3384383, overlap 3384381 3384383 AATTCTCCTTCTATG TAAAAAGGTTGT-CATAAAATC AATTA GATGTTATGAACAACCTCTATA TTTTTATTTATATAT TERM 4499 3384418 - 3384383 - R 79 -7.1 -4.65895 | gap 1, opp_overlap 3384381 3384377 3384383 CCTTCTATGTAAAAA GGTTGT-CATAAAATC AATTA GATGTTATGAACAACC TCTATATTTTTATTT CLH_3139 3384802 - 3384449 - | alkylhydroperoxidase AhpD domain protein TERM 4500 3384902 - 3384885 - R 78 -5.6 -5.24129 | opp_overlap 3384885 3384901, overlap 3384867 TCTTTGTATAAAAAA TACCAC ATCAAA GTGGTA TTGTCAATATTTACA CLH_3140 3385334 - 3384906 - | transcriptional regulator, MarR family TERM 4501 3385619 - 3385582 - R 100 -16 -5.06103 | opp_overlap 3385582 ATAATCTCTAAAAAA TATAGGATATGTTTTC ATACTA GAAAACATATCCTATA TTCTTTAACTCTGAT TERM 4502 3385582 - 3385619 + r 100 -16 -3.99315 | opp_overlap 3385582 ATAATCTCTAAAAAA TATAGGATATGTTTTC ATACTA GAAAACATATCCTATA TTCTTTAACTCTGAT CLH_3141 3385902 - 3385732 - | nitrogen-fixing NifU domain protein TERM 4503 3385984 - 3386024 + H 73 -8 -3.66541 | opp_overlap 3385984, overlap 3385999 3386003 3386019 ACATACTACACAGAA TTTCAATAGTAAATATTA TTAAT TAATAATTATTATTGAAA TTTCAAATATATATT CLH_3142 3386269 - 3386718 + | hypothetical protein CLH_3143 3388008 - 3386998 - | caax amino protease family protein TERM 4504 3388187 - 3388147 - R 100 -14.3 -3.89212 | opp_overlap 3388149, overlap 3388148 TATTTATATACCAAA TTTTATTCCTATTGCTATC ACA GATAGCAATAGGAATAATT TTTTTATTTTAATTA TERM 4505 3388186 - 3388148 - R 100 -17.8 -2.93045 | opp_overlap 3388149, overlap 3388147 ATTTATATACCAAAT TTTATTCCTATTGCTATC ACA GATAGCAATAGGAATAAT TTTTTTATTTTAATT TERM 4506 3388149 - 3388185 + r 100 -21.3 -6.11229 | opp_overlap 3388148 3388147 TTTATATACCAAATT TTATTCCTATTGCTATC ACA GATAGCAATAGGAATAA TTTTTTTATTTTAAT CLH_3144 3388732 - 3388247 - | CinA family protein CLH_3145 3389364 - 3388756 - | phosphoglycerate mutase family protein TERM 4507 3389588 - 3389545 - R 100 -18.6 -4.91511 | opp_overlap 3389550 3389558 AGCCCATCACAAAAA TAAGACCATTTAACTGCAAT GCAC ATTACAGTTAAATGGTCCTA TAAAAATCTTATTTA TERM 4508 3389550 - 3389583 + r 90 -12.7 -2.63479 | opp_overlap 3389545, overlap 3389558 ATCACAAAAATAAGA CCATTTAACTGCAAT GCAC ATTACAGTTAAATGG TCCTATAAAAATCTT CLH_3146 3390559 - 3389606 - | glucokinase TERM 4509 3389795 - 3389819 + g 76 -8.7 -3.54307 | ACCAATTATTATTAC TTCTGGATCAA AAA TTGATACAGAA TTTGCAACAGCTATT CLH_3147 3390914 - 3390678 - | hypothetical protein TERM 4510 3391050 - 3391013 - R 70 -5.1 -4.75308 | ATTAATATGTAAAAA GAGATATAAATACCA TTATTTCC TAGTACTTATATCCC TCTTAATTTAACTTT fusA 3393159 - 3391078 - | translation elongation factor G TERM 4511 3393279 - 3393299 + H 77 -4.9 -5.28778 | opp_overlap 3393284, overlap 3393276 3393284 ACTCCTTTATATTTT TGAAATATT CAG AATATTTTA TTTTTTCTAACTAAT TERM 4512 3393284 - 3393294 + H 70 -2.6 -5.49579 | opp_overlap 3393284, overlap 3393276 3393279 TTTATATTTTTGAAA TATT CAG AATA TTTTATTTTTTCTAA TERM 4513 3393491 - 3393508 + G 74 -2.7 -5.61824 | opp_overlap 3393491 AATTTAAATCTAAAA GTAATCT TAAT AGATTTC TTTTTTTAACTTTTA TERM 4514 3393903 - 3393891 - g 74 -2.7 -5.56264 | TTTAAACATAAAAAA TAGCT TAA AACTA ACTTTTATAGGCATT CLH_3149 3393466 - 3394962 + | hypothetical protein CLH_3150 3395187 - 3397004 + | sulfatase family protein TERM 4515 3397357 - 3397342 - f 70 -3.4 -5.40279 | GAAAATAAAATAAAA TTTAAT GGAG ATTAAA TATGAAAGAAAAATT CLH_3151 3397359 - 3399179 + | sulfatase family protein TERM 4516 3399292 - 3399270 - T 100 -13.6 -5.60689 | opp_overlap 3399270 GCACATAATAAAAAA GGATGTTGAA AAA TTCAACATCC TTTTCCTATAAAATA TERM 4517 3399270 - 3399292 + T 100 -13.6 -4.35116 | opp_overlap 3399270 GCACATAATAAAAAA GGATGTTGAA AAA TTCAACATCC TTTTCCTATAAAATA CLH_3152 3400846 - 3399311 - | aminobenzoyl-glutamate transport protein TERM 4518 3401013 - 3401039 + r 73 -4.6 -5.1286 | opp_overlap 3401013, overlap 3400984 ATTACGTCATAAAAT TGAATTTTTATA TAT TGAAAAAATTCA TTTTTGTAATTTTTC TERM 4519 3401111 - 3401062 - R 100 -13.4 -4.84017 | opp_overlap 3401062 3401068 AATTTTTCATAAAAA TTAAAAGCCTTGAGATTAAA TTTTTATTTT TTTAATCTCAAGACTTTTAA TTTACTTATTACAAA TERM 4520 3401062 - 3401111 + r 100 -11.2 -4.07618 | opp_overlap 3401062, overlap 3401068 AATTTTTCATAAAAA TTAAAAGCCTTGAGATTAAA TTTTTATTTT TTTAATCTCAAGACTTTTAA TTTACTTATTACAAA TERM 4521 3401068 - 3401105 + r 71 -5.8 -4.62957 | opp_overlap 3401062, overlap 3401062 TCATAAAAATTAAAA GCCTTGAGATTAAA TTTTTATTTT TTTAATCTCAAGAC TTTTAATTTACTTAT CLH_3153 3401543 - 3401085 - | acetobutylicum phosphotransbutyrylase CLH_3154 3402151 - 3401714 - | hypothetical protein CLH_3155 3402483 - 3402881 + | putative lipoprotein TERM 4522 3402902 - 3402879 - T 100 -11.2 -5.85011 | opp_overlap 3402879 GAAAAAGCAAAAAAA TAAGCTATGA ATAA TCATAGCTTA TTTTTATAAATGGTG TERM 4523 3402879 - 3402902 + T 100 -11.2 -4.88736 | opp_overlap 3402879 GAAAAAGCAAAAAAA TAAGCTATGA ATAA TCATAGCTTA TTTTTATAAATGGTG TERM 4524 3404807 - 3404823 + T 74 -8.7 -3.05343 | CAGCGGACGAACCTT CCTGAGG AAA CCTTAGG TATTCGGCCTGTGGG TERM 4525 3405396 - 3405406 + T 71 -6.8 -4.15453 | opp_overlap 3405385 GCAACGTGGTTCGGT CCTC CAC GAGG TTTTACCCTCGCTTC TERM 4526 3405632 - 3405643 + T 75 -7.2 -4.2354 | AGGTTCTATTTCACT CCCC TCCC GGGG TTCTTTTCACCTTTC TERM 4527 3405706 - 3405721 + T 81 -10.4 -2.71011 | GTAGTATTTAGCCTT GGGAGG TGGT CCTCCC TGCTTCCCACAAGGT TERM 4528 3405873 - 3405890 + T 76 -8.5 -3.695 | GTTCTGTCCGCAACC CCAAAGA TAAA TCTTTGG TTTGGGCTCTTTCCC TERM 4529 3406017 - 3406032 + T 72 -9 -2.69489 | opp_overlap 3406017 3406019, overlap 3406014 ATTCACTTTACGATA CATGGG GTTT CCCATG TGAGTTTCCTCATTC TERM 4530 3406032 - 3406017 - T 73 -9 -2.79915 | opp_overlap 3406017 3406014, overlap 3406019 ATTCACTTTACGATA CATGGG GTTT CCCATG TGAGTTTCCTCATTC TERM 4531 3406297 - 3406269 - T 95 -10.5 -3.94 | overlap 3406271 GCAATTTTCAAAGAA CATTTTGAAAGAC TTA GTCTTTCAAAATT GAACAGAATCTACAT TERM 4532 3406295 - 3406271 - T 100 -13.1 -3.55603 | overlap 3406269 AATTTTCAAAGAACA TTTTGAAAGAC TTA GTCTTTCAAAA TTGAACAGAATCTAC TERM 4533 3406405 - 3406424 + T 75 -9.2 -2.65808 | opp_overlap 3406396 3406393, overlap 3406402 3406402 AAAGGAGGTGATCCA GCCGCAGG TTCT CCTACGGC TACCTTGTTACGACT TERM 4534 3407996 - 3408013 + T 81 -5.6 -5.31091 | GACCAAATTTTCTCA GTTGAC TTTCTT GTCAAC TTTTGTTTTATTGTG TERM 4535 3408199 - 3408223 + T 71 -8.1 -3.11339 | opp_overlap 3408199, overlap 3408194 3408197 3408195 AACACTATTTTAAAA GTTTTTTATTA TTT TAATAAGAAAC TGTATATTGAATACT TERM 4536 3408376 - 3408431 + T 73 -6.4 -4.33576 | opp_overlap 3408382 ACATACTTTATAATT TAAAAATGCCTATATACTAAACAG CTTTCATA CTGTAAAGTATACAGGCATTATTA TTTATATATTTATTA TERM 4537 3408425 - 3408382 - T 88 -8.3 -4.78149 | opp_overlap 3408376 TTTATAATTTAAAAA TGCCTATATACTAAACAGC TTTCAT ACTGTAAAGTATACAGGCA TTATTATTTATATAT glgD 3409629 - 3408523 - | glucose-1-phosphate adenylyltransferase, GlgD subunit glgC 3410811 - 3409651 - | glucose-1-phosphate adenylyltransferase CLH_3164 3412723 - 3410909 - | amylopullulanase TERM 4538 3412748 - 3412790 + r 71 -8.1 -2.98947 | gap 1, opp_overlap 3412747, overlap 3412761 3412774 CTTCCTATAAGGCAT CTTCACAAAAT-AACTAGTA AGTA TGCTAGTTTATTTTGTGAAC TACTTATTCCTTGAA CLH_3165 3415333 - 3412892 - | glycogen phosphorylase CLH_3166 3416800 - 3415364 - | glycogen synthase TERM 4539 3416113 - 3416127 + g 86 -5.7 -5.50774 | GCCAATCTAGTCTTT CTCCA AACTC TGGAG TTTTTATTTCTTCTG glgB 3419189 - 3416943 - | 1,4-alpha-glucan branching enzyme TERM 4540 3419685 - 3419718 + r 100 -17.1 -3.86106 | opp_overlap 3419685 TTGAAATTAAAGAAA GTGCAGTATTAATTA TTTT TAATTAATACTGCAC TTTAATGATTAATCT TERM 4541 3419718 - 3419685 - R 100 -17.1 -4.62772 | opp_overlap 3419685 TTGAAATTAAAGAAA GTGCAGTATTAATTA TTTT TAATTAATACTGCAC TTTAATGATTAATCT CLH_3168 3419954 - 3419835 - | hypothetical protein TERM 4542 3419914 - 3419936 + g 71 -7.8 -3.6715 | opp_overlap 3419914 TTATATACTAAAAAA GAGATAGTCA TAA TAACTATCTC TTTAAACTTACCTGG TERM 4543 3419936 - 3419914 - G 100 -10 -5.24989 | opp_overlap 3419914 TTATATACTAAAAAA GAGATAGTCA TAA TAACTATCTC TTTAAACTTACCTGG TERM 4544 3421674 - 3421690 + H 74 -8.7 -3.05343 | CAGCGGACGAACCTT CCTGAGG AAA CCTTAGG TATTCGGCCTGTGGG TERM 4545 3422264 - 3422274 + H 71 -6.8 -4.15453 | opp_overlap 3422253 GCAACGTGGTTCGGT CCTC CAC GAGG TTTTACCCTCGCTTC TERM 4546 3422500 - 3422511 + H 75 -7.2 -4.2354 | AGGTTCTATTTCACT CCCC TCCC GGGG TTCTTTTCACCTTTC TERM 4547 3422574 - 3422589 + H 81 -10.4 -2.71011 | GTAGTATTTAGCCTT GGGAGG TGGT CCTCCC TGCTTCCCACAAGGT TERM 4548 3422741 - 3422758 + H 76 -8.5 -3.695 | GTTCTGTCCGCAACC CCAAAGA TAAA TCTTTGG TTTGGGCTCTTTCCC TERM 4549 3422885 - 3422900 + H 72 -9 -2.69489 | opp_overlap 3422885 3422887, overlap 3422882 ATTCACTTTACGATA CATGGG GTTT CCCATG TGAGTTTCCTCATTC TERM 4550 3422900 - 3422885 - H 73 -9 -2.79915 | opp_overlap 3422885 3422882, overlap 3422887 ATTCACTTTACGATA CATGGG GTTT CCCATG TGAGTTTCCTCATTC TERM 4551 3423165 - 3423137 - H 95 -10.5 -3.94 | overlap 3423139 GCAATTTTCAAAGAA CATTTTGAAAGAC TTA GTCTTTCAAAATT GAACAGAATCTACAT TERM 4552 3423163 - 3423139 - H 100 -13.1 -3.55603 | overlap 3423137 AATTTTCAAAGAACA TTTTGAAAGAC TTA GTCTTTCAAAA TTGAACAGAATCTAC TERM 4553 3423273 - 3423292 + H 75 -9.2 -2.65808 | opp_overlap 3423264 3423261, overlap 3423270 3423270 AAAGGAGGTGATCCA GCCGCAGG TTCT CCTACGGC TACCTTGTTACGACT TERM 4554 3424864 - 3424881 + H 81 -5.6 -5.31091 | GACCAAATTTTCATT GTTGAC TTTCTT GTCAAC TTTTGTTTTATTGTG TERM 4555 3425564 - 3425598 + H 100 -9.5 -5.80364 | opp_overlap 3425564 3425571 GTTACTGTTAAATCA GGCATAAGTTTTCTT ATCTA AAGAAACCTTATGTC TTTTTTTATTAACAT TERM 4556 3425697 - 3425716 + H 80 -9.4 -3.15228 | opp_overlap 3425699, overlap 3425696 AGAAAGGATGTGAAT TATCCTGA TAAG TCAGGATA TAATTTATGTTTGGA ptbA 3425723 - 3426214 + | PTS system, glucose subfamily, IIA component TERM 4557 3426242 - 3426280 + T 72 -9 -2.70044 | opp_overlap 3426243, overlap 3426241 ATTCACAAAATTTAA ATGCCCTAGTAGATAA CTCAATA TTATCCACTAGGGCAA AATTTTTATAAACTA TERM 4558 3426279 - 3426243 - T 100 -15.4 -3.96705 | opp_overlap 3426242 3426241 TTCACAAAATTTAAA TGCCCTAGTAGATAAC TCAAT ATTATCCACTAGGGCA AAATTTTTATAAACT CLH_3174 3427952 - 3426300 - | PTS system, glucose-like IIB component TERM 4559 3428011 - 3428032 + r 77 -8.9 -3.31144 | opp_overlap 3428005, overlap 3428007 AATTATATATTGCTA TTTTTAGCT TACT AGCTAAAAA TTATGCAAATAAAAA TERM 4560 3428064 - 3428049 - R 79 -4 -5.65927 | overlap 3428059 TATGCAAATAAAAAA GACTTA AATA TAAGCC CAGAAAAATTTATTC CLH_3175 3429050 - 3428196 - | transcription antiterminator LicT TERM 4561 3428908 - 3428927 + g 70 -2.2 -5.42259 | gap 1, overlap 3428909 TCTATTTCTGTATTT TCAGGT-AT TAC ATGACCTGG TTTTTTTCCAAATCC CLH_3176 3430218 - 3429271 - | acetyltransferase, gnat family TERM 4562 3429963 - 3429946 - G 79 -4.9 -5.37593 | TCCTAAATCAAAAAA GGAATTA ACAT CAATTCC CTCTATAGCCCTAAT TERM 4563 3430277 - 3430248 - R 79 -8.7 -3.76952 | opp_overlap 3430248 3430250 TGCATTTAATTGAAA TAGCACTCACATT TATT AATGAAAGTGCTA TCCTATATCTATTAT CLH_3177 3430606 - 3430340 - | hypothetical protein CLH_3178 3431003 - 3430659 - | hypothetical protein TERM 4564 3431305 - 3431286 - R 86 -4.2 -5.95539 | overlap 3431278 TTTTAAACAAAAAAA GCCAGAGC TTTC ACCCTGAC TTCTTTATGTGTTAA TERM 4565 3431465 - 3431487 + r 71 -6.4 -4.07885 | opp_overlap 3431468, overlap 3431468 CTGAGTAAGTTCCAC TAACTAAATC ATA GATTTAGATA TTTTAAAAGAAACTC TERM 4566 3431484 - 3431468 - R 72 -8.1 -3.16921 | opp_overlap 3431465 3431468 AGTAAGTTCCACTAA CTAAATC ATA GATTTAG ATATTTTAAAAGAAA CLH_3179 3432920 - 3431562 - | flagellin TERM 4567 3433270 - 3433218 - R 100 -16 -5.96894 | opp_overlap 3433218 3433237 ATTGAAATAAAAAAA GAGCGATCTTCATTAAACCTTAGC TTCCT GCTAATATTTAATGAAAATCACTC TTCCTGAGCTTGTAC TERM 4568 3433218 - 3433270 + r 80 -9.4 -3.19653 | opp_overlap 3433218, overlap 3433237 ATTGAAATAAAAAAA GAGCGATCTTCATTAAACCTTAGC TTCCT GCTAATATTTAATGAAAATCACTC TTCCTGAGCTTGTAC CLH_3180 3433542 - 3433381 - | putative carbon storage regulator TERM 4569 3433619 - 3433603 - R 70 -5.9 -4.20074 | opp_overlap 3433610, overlap 3433604 AAACACATCCTAAAA CTTAGCA TCC TGCTAAA CTAATAGGATAATAT TERM 4570 3433978 - 3433954 - R 93 -8 -5.20222 | opp_overlap 3433954 3433952 AGTAAATAAAGAAAA CCACTCAATT AATAA AATTAAGTGG TATTTTTAACAAATC CLH_3181 3435980 - 3434052 - | hypothetical protein TERM 4571 3436043 - 3436068 + r 100 -10.7 -5.61689 | opp_overlap 3436043 CCATAAAATAAAAAA TCATACAATAA CGTA TTATTGTATGA TTTTTTATTGATTTT TERM 4572 3436068 - 3436043 - R 100 -10.7 -5.86976 | opp_overlap 3436043 CCATAAAATAAAAAA TCATACAATAA CGTA TTATTGTATGA TTTTTTATTGATTTT CLH_3182 3437257 - 3436490 - | thiF domain protein TERM 4573 3437933 - 3437912 - g 93 -4.5 -6.09888 | CTTGAAGAAAAAAAA GAAAAAGCA AATA TGGTTTTTC ATAAAGGAACTATAA TERM 4574 3438240 - 3438230 - g 76 -4 -5.40072 | GCTGCTGCAAAAAAA TCTT GTG AAGA AATATCTGAATTAAA TERM 4575 3438325 - 3438312 - g 74 -3.9 -5.31456 | CTAACTTAGAAAAAA TTCAA TGGC TTGAA AAAGAATTTGGAGCT mtnN 3437834 - 3438526 + | MTA/SAH nucleosidase TERM 4576 3438572 - 3438530 - T 100 -23.8 -3.98907 | opp_overlap 3438535, overlap 3438535 GAAAAACTATAAGAA CAAAAGGTCCAAGTTGGTGA CTG TCACCAACTTGGACCTTTTT TAGTTAAGAGTAAAC TERM 4577 3438567 - 3438535 - T 100 -23.7 -4.9645 | opp_overlap 3438535, overlap 3438530 ACTATAAGAACAAAA GGTCCAAGTTGGTGA CTG TCACCAACTTGGACC TTTTTTAGTTAAGAG TERM 4578 3438535 - 3438567 + T 100 -23.7 -5.26875 | opp_overlap 3438530 3438535 ACTATAAGAACAAAA GGTCCAAGTTGGTGA CTG TCACCAACTTGGACC TTTTTTAGTTAAGAG CLH_3184 3439940 - 3438588 - | surface protein PspC TERM 4579 3439779 - 3439765 - G 70 -5.8 -4.26076 | opp_overlap 3439765 CCATCTTGATTAAAA TAATAC CAT GTATTA TTTATATTTTCCCAT TERM 4580 3439765 - 3439779 + g 72 -5.8 -4.45771 | opp_overlap 3439765 CCATCTTGATTAAAA TAATAC CAT GTATTA TTTATATTTTCCCAT TERM 4581 3439901 - 3439915 + g 78 -2.8 -5.90981 | TAATTGATAGTGCCA TTACTG CCG CTGTAA TTTTTTTTAATCTAG CLH_3185 3441269 - 3440118 - | membrane protein, YbiE/YbiF family CLH_3186 3445979 - 3441468 - | OB-fold nucleic acid binding domain protein TERM 4582 3446285 - 3446234 - R 72 -4.7 -4.94972 | opp_overlap 3446241 3446246 3446280, overlap 3446238 3446246 TAGTATAACTAAAAA TTTATAAAAAAAGATGACAATCA AATAAA TGAAAGTCATCTTTTCTTACTAA TAGTATTTTTATATT TERM 4583 3446273 - 3446246 - R 73 -2.7 -5.68039 | opp_overlap 3446241 3446246, overlap 3446238 3446234 AAATTTATAAAAAAA GATGACAATCA AATAAA TGAAAGTCATC TTTTCTTACTAATAG TERM 4584 3446280 - 3446290 + r 72 -4 -5.28983 | opp_overlap 3446238 3446234 AAAGTCATCTTTTCT TACT AAT AGTA TTTTTATATTTTCGC CLH_3187 3447471 - 3446341 - | surface protein PspC CLH_3188 3448875 - 3447535 - | hypothetical protein TERM 4585 3447955 - 3447985 + g 70 -8.4 -2.51438 | overlap 3447954 3447962 ATCTATAAATTTTCC TGCTTTATCTGATA CTT TATCAGATATTGCA CCTATTTTTTCTTCA TERM 4586 3447962 - 3447978 + g 70 -8.1 -3.07431 | overlap 3447955 3447954 AATTTTCCTGCTTTA TCTGATA CTT TATCAGA TATTGCACCTATTTT CLH_3189 3449567 - 3448929 - | hypothetical protein CLH_3190 3450176 - 3449709 - | acetobutylicum phosphotransbutyrylase CLH_3191 3450540 - 3451625 + | surface protein PspC TERM 4587 3451633 - 3451656 + T 90 -11.8 -2.98014 | opp_overlap 3451629 3451633, overlap 3451629 AAGGTTAAAAATTAA GCCAGTTCTA ATTT TAGGACTGGC TATACTTAATTCATT TERM 4588 3451656 - 3451633 - T 84 -9.6 -3.82528 | opp_overlap 3451633 3451629, overlap 3451629 AAGGTTAAAAATTAA GCCAGTTCTA ATTT TAGGACTGGC TATACTTAATTCATT CLH_3192 3453421 - 3451730 - | hypothetical protein CLH_3193 3454555 - 3453575 - | hypothetical protein TERM 4589 3454718 - 3454704 - R 76 -4.4 -5.30339 | overlap 3454696 ATGAAAATATAAAAA TTTTTT ATA AAAAAA CAGATAAGACTTTTT TERM 4590 3454744 - 3454719 - R 79 -4.8 -5.60993 | opp_overlap 3454721 TTTTTTATAAAAAAA CAGATAAGAC TTTTTT ATCTCATCTG CTTAATAACTAAATT TERM 4591 3454824 - 3454796 - R 100 -8.9 -4.97824 | AAAAGTTAAACAAAA TTCTAAGGTGGTA ATT TGCCCCCTTAGAA AAAAACTATTATTGG galU 3455743 - 3454865 - | UTP-glucose-1-phosphate uridylyltransferase rfbB 3456949 - 3455897 - | dTDP-glucose 4,6-dehydratase rfbD 3457925 - 3457032 - | dTDP-4-dehydrorhamnose reductase rfbC 3458590 - 3458012 - | dTDP-4-dehydrorhamnose 3,5-epimerase rfbA 3459512 - 3458613 - | glucose-1-phosphate thymidylyltransferase CLH_3199 3460750 - 3459920 - | 3-oxoacyl-[acyl-carrier-protein] reductase TERM 4592 3460042 - 3460052 + g 73 -5.4 -4.66057 | CTGGCATCGTATATC TCCT TAT AGGA TTTTGATTTGTATAT TERM 4593 3460689 - 3460700 + g 71 -4.4 -4.86731 | ACATTATTTTGAATT GGAA CTAT TTCC TTTTCTTTGAACAAA CLH_3200 3461773 - 3460769 - | glycosyl transferase, group 2 family protein CLH_3201 3462994 - 3461900 - | hypothetical protein TERM 4594 3462842 - 3462860 + g 74 -6.2 -4.59414 | ATAAGAGCATACATC TTTTATAA AAC TTATAAAA TTTTCCTTCTTATCA TERM 4595 3463095 - 3463057 - R 95 -12.2 -3.54543 | opp_overlap 3463067 3463070, overlap 3463059 3463067 ATTGATCTTCTCAAA TATTAATAAATAAGTTTT CCT AAAACTTATTTATTAAAA AAAGGACGAAGAAAG TERM 4596 3463093 - 3463059 - R 100 -14.8 -3.35046 | opp_overlap 3463067 3463070, overlap 3463057 3463067 TGATCTTCTCAAATA TTAATAAATAAGTTTT CCT AAAACTTATTTATTAA AAAAAGGACGAAGAA TERM 4597 3463085 - 3463067 - R 78 -7.6 -4.36433 | opp_overlap 3463067 3463070, overlap 3463059 3463057 TCAAATATTAATAAA TAAGTTTT CCT AAAACTTA TTTATTAAAAAAAGG TERM 4598 3463067 - 3463085 + r 77 -7.6 -4.15044 | opp_overlap 3463067 3463059 3463057, overlap 3463070 TCAAATATTAATAAA TAAGTTTT CCT AAAACTTA TTTATTAAAAAAAGG TERM 4599 3463350 - 3463393 + r 80 -10 -2.93747 | opp_overlap 3463356, overlap 3463353 3463356 AAGTAATCTTTACTA TCATAAGTTTATTGTTATCT ATCT ATATAACAATAAACTTATAA TATATACCATTTGCT TERM 4600 3463353 - 3463390 + r 86 -11.7 -2.70543 | opp_overlap 3463356, overlap 3463350 3463356 TAATCTTTACTATCA TAAGTTTATTGTTATCT ATCT ATATAACAATAAACTTA TAATATATACCATTT TERM 4601 3463387 - 3463356 - R 77 -9 -3.44051 | opp_overlap 3463353 3463350 3463356 TCTTTACTATCATAA GTTTATTGTTATCT ATCT ATATAACAATAAAC TTATAATATATACCA TERM 4602 3463356 - 3463387 + r 79 -9 -3.49777 | opp_overlap 3463356, overlap 3463353 3463350 TCTTTACTATCATAA GTTTATTGTTATCT ATCT ATATAACAATAAAC TTATAATATATACCA CLH_3202 3464575 - 3463490 - | hypothetical protein TERM 4603 3464045 - 3464070 + g 83 -8.5 -4.49132 | opp_overlap 3464042 3464050, overlap 3464042 3464050 ATGAATAGAAATTGC TAAGAGCATTA TAAA TAATGCTTTTA TTCTTTTCTCTTTAA TERM 4604 3464050 - 3464065 + g 82 -6.2 -5.12916 | opp_overlap 3464042 3464050, overlap 3464042 3464045 TAGAAATTGCTAAGA GCATTA TAAA TAATGC TTTTATTCTTTTCTC TERM 4605 3465048 - 3465059 + r 78 -4.4 -5.50499 | AATTCTACTTTTTAT GGTA ATTT TACC TTTTTTTCCGTATCC CLH_3203 3466464 - 3465055 - | putative polysaccharide transporter CLH_3204 3467149 - 3466451 - | Eps7I CLH_3205 3468137 - 3467163 - | glycosyl transferase, group 2 family protein CLH_3206 3468968 - 3468138 - | CpsP TERM 4606 3469038 - 3469065 + r 73 -5.6 -4.86133 | opp_overlap 3469044, overlap 3469040 ATTCATTGTGATATC TACAAACTCTTC ATAA GAAGAGTATGTC TTTTTAGTATCTATG CLH_3207 3469733 - 3469014 - | hypothetical protein TERM 4607 3469040 - 3469063 + g 78 -8.2 -4.03909 | opp_overlap 3469044, overlap 3469038 TCATTGTGATATCTA CAAACTCTTC ATAA GAAGAGTATG TCTTTTTAGTATCTA TERM 4608 3469059 - 3469044 - G 75 -7.6 -3.95073 | opp_overlap 3469040 3469038 TGTGATATCTACAAA CTCTTC ATAA GAAGAG TATGTCTTTTTAGTA CLH_3208 3470971 - 3469862 - | Eps4F TERM 4609 3470387 - 3470402 + g 83 -7.6 -4.73682 | opp_overlap 3470379 TATAATATAAGCATC CTTAGG TATT CCTAAG TTTTCTCTTGTCAAA CLH_3209 3471712 - 3470993 - | mannose-1-phosphate guanylyltransferase CLH_3210 3472397 - 3471726 - | galactosyl transferase CpsE TERM 4610 3472815 - 3472832 + r 75 -5.7 -5.03201 | opp_overlap 3472815, overlap 3472798 3472807 TATTTTTTTAAGAAA GAAAAAA ATGA TTTTTTC TTTTTAATTCTTCTT CLH_3211 3473566 - 3472799 - | putative tyrosine-protein phosphatase CapC CLH_3212 3474489 - 3473746 - | tyrosine-protein kinase etk CLH_3213 3475188 - 3474502 - | capsular polysaccharide biosynthsis protein TERM 4611 3475547 - 3475511 - R 100 -15.4 -2.82015 | opp_overlap 3475511, overlap 3475500 3475516 3475518 GTGACAGCTATTATA TGATACATCCCTTGTC TACTT GATAAGGGATGTATCA TTATAACTATCACTT TERM 4612 3475511 - 3475547 + r 100 -17.6 -3.40071 | opp_overlap 3475511 3475500 3475516 3475518 GTGACAGCTATTATA TGATACATCCCTTGTC TACTT GATAAGGGATGTATCA TTATAACTATCACTT TERM 4613 3475542 - 3475516 - R 76 -9.5 -2.87647 | opp_overlap 3475511, overlap 3475511 3475500 3475518 AGCTATTATATGATA CATCCCTTGTC TACTT GATAAGGGATG TATCATTATAACTAT rfbC 3476295 - 3475708 - | dTDP-4-dehydrorhamnose 3,5-epimerase CLH_3215 3477724 - 3476405 - | CBS/transporter domain protein TERM 4614 3477584 - 3477594 + g 80 -4 -5.70761 | overlap 3477582 TTTCTTATCTCCCTC TTCT GCA AGAA TTTTTATTTTATTTT CLH_3216 3479336 - 3478080 - | hypothetical protein TERM 4615 3479641 - 3479596 - R 72 -8.7 -2.72227 | gap 1, opp_overlap 3479613, overlap 3479599 AATATGGTGGAATTA TAATTGAACTTTGGTAATACTT AAT AAGTATT-CCTAAACTCAATTA CAGTGTCCACCTTTT CLH_3217 3480627 - 3479719 - | D-3-phosphoglycerate dehydrogenase TERM 4616 3480929 - 3480913 - R 71 -6.7 -4.1413 | AACATAGTCTTAAAA TATAGAT AAC ATCTATA GCCCTAAAATTTCTT CLH_3218 3481998 - 3480925 - | aspartate aminotransferase TERM 4617 3481634 - 3481644 + g 71 -4 -5.01535 | AAATCATATTTGCCT GTAT TCA ATAC TTTTTCTACTTCTGC TERM 4618 3482650 - 3482686 + r 100 -17 -5.99154 | opp_overlap 3482650 AATGAAAATAAAAAA GCTCTCTAATAATTTT ATCAA AAAATTATTAGAGAGC TTTTTTTATTTAATA TERM 4619 3482686 - 3482650 - R 100 -17 -5.85244 | opp_overlap 3482650 AATGAAAATAAAAAA GCTCTCTAATAATTTT ATCAA AAAATTATTAGAGAGC TTTTTTTATTTAATA CLH_3219 3482881 - 3482696 - | hypothetical protein TERM 4620 3482954 - 3482905 - R 100 -21.5 -3.53012 | opp_overlap 3482906 3482911 3482914, overlap 3482911 3482914 3482936 TTCCTTTCTTTTAAA TTATAATAATGGTATTATATTTA CCAC TAAATATAATACCATTATTATAA ACATAAATTCAAAAA TERM 4621 3482948 - 3482911 - R 100 -16.1 -3.60151 | opp_overlap 3482906 3482911 3482914, overlap 3482905 3482914 3482936 TCTTTTAAATTATAA TAATGGTATTATATTTA CCAC TAAATATAATACCATTA TTATAAACATAAATT TERM 4622 3482911 - 3482948 + r 100 -16.1 -3.3164 | opp_overlap 3482911 3482905 3482914 3482936, overlap 3482906 3482914 TCTTTTAAATTATAA TAATGGTATTATATTTA CCAC TAAATATAATACCATTA TTATAAACATAAATT TERM 4623 3482914 - 3482945 + r 100 -13.4 -3.79906 | opp_overlap 3482911 3482905 3482914 3482936, overlap 3482906 3482911 TTTAAATTATAATAA TGGTATTATATTTA CCAC TAAATATAATACCA TTATTATAAACATAA TERM 4624 3482945 - 3482914 - R 100 -13.4 -3.93216 | opp_overlap 3482906 3482914 3482911, overlap 3482911 3482905 3482936 TTTAAATTATAATAA TGGTATTATATTTA CCAC TAAATATAATACCA TTATTATAAACATAA CLH_3220 3484185 - 3482971 - | putative ABC transporter, permease protein TERM 4625 3483935 - 3483958 + g 71 -7.6 -3.57873 | opp_overlap 3483941, overlap 3483929 3483923 3483939 TGTTTTAGATCTTCT TGAAGAGTAT TTAA ATACTCTTTA TCTTTACTATTCTCT TERM 4626 3483939 - 3483954 + g 72 -6.2 -4.39414 | opp_overlap 3483941, overlap 3483929 3483923 3483935 TTAGATCTTCTTGAA GAGTAT TTAA ATACTC TTTATCTTTACTATT CLH_3221 3485100 - 3484186 - | bacitracin transport ATP-binding protein BcrA CLH_3222 3485697 - 3485449 - | sigma-K factor-processing regulatory protein BofA TERM 4627 3485658 - 3485634 - G 80 -8.1 -4.13945 | opp_overlap 3485629 ATGGCCATTTTAAAA GTTTTATCATT ACA AATAATAAAAC AAGTCCTATTAGTCC CLH_3223 3485990 - 3485715 - | hypothetical protein TERM 4628 3485792 - 3485803 + g 73 -3 -5.4477 | opp_overlap 3485792 TAGCTATAAGTAATA GATA ATCA TATC TTTTTTTAGCCATTT TERM 4629 3486286 - 3486311 + r 100 -14.9 -4.96646 | TAACACCTTTTTTTC TGGAACCCAAT ATCT ATTGGGTTCCA TTTTTAGTTCTATGA recR 3486994 - 3486398 - | recombination protein RecR TERM 4630 3486725 - 3486747 + g 71 -7.8 -3.55842 | CATTGTCATTATATC TTTGGGTTGT TCT ACAACACAAA TTGTACTCTTATCTC TERM 4631 3487085 - 3487097 + r 77 -3.5 -5.67967 | TAATTATATTTTTTA TAATT TAA AATTA TTTTTTTATAATACT TERM 4632 3487198 - 3487162 - R 89 -9.5 -4.26188 | opp_overlap 3487162 TTTAGATAGTTAAAA GCATACAGCTTTAAGGA ATT TCCTTTATTCTGTATGC TTTATTTTTAATTAG TERM 4633 3487162 - 3487198 + r 100 -9.5 -4.96773 | opp_overlap 3487162 TTTAGATAGTTAAAA GCATACAGCTTTAAGGA ATT TCCTTTATTCTGTATGC TTTATTTTTAATTAG CLH_3225 3487586 - 3487245 - | hypothetical protein dnaX 3489305 - 3487665 - | DNA polymerase III, gamma and tau subunit thyA 3489575 - 3490366 + | thymidylate synthase folA 3490478 - 3490972 + | dihydrofolate reductase TERM 4634 3491152 - 3491109 - T 100 -18.8 -3.38966 | opp_overlap 3491119 3491121 3491149 3491151 AAAAGTTATCCACAA TTTTTTAATCTATAGATATA AATT TATATCTATAGATTAAAAAA GGATAAGAAAATGAG TERM 4635 3491149 - 3491207 + T 100 -17.3 -4.5477 | gap 1, opp_overlap 3491109 3491153, overlap 3491151 3491153 3491164 ATATCTATAGATTAA -AAAAGGATAAGAAAATGAGGGAATTTA AAAA TAAATCCCCTCATTTTCTTATCCTATTG TTTTGTCCTATATTG TERM 4636 3491151 - 3491204 + T 100 -21.5 -4.36649 | opp_overlap 3491109 3491153, overlap 3491149 3491153 3491164 ATCTATAGATTAAAA AAGGATAAGAAAATGAGGGAATTTA AAAA TAAATCCCCTCATTTTCTTATCCTA TTGTTTTGTCCTATA TERM 4637 3491153 - 3491202 + T 100 -24.1 -3.77187 | opp_overlap 3491153, overlap 3491151 3491149 3491164 CTATAGATTAAAAAA GGATAAGAAAATGAGGGAATTTA AAAA TAAATCCCCTCATTTTCTTATCC TATTGTTTTGTCCTA TERM 4638 3491202 - 3491153 - T 100 -26.3 -5.24989 | opp_overlap 3491153 3491151 3491149 3491164 CTATAGATTAAAAAA GGATAAGAAAATGAGGGAATTTA AAAA TAAATCCCCTCATTTTCTTATCC TATTGTTTTGTCCTA TERM 4639 3491164 - 3491191 + T 100 -10 -4.83722 | opp_overlap 3491153, overlap 3491153 3491151 3491149 AAAAGGATAAGAAAA TGAGGGAATTTA AAAA TAAATCCCCTCA TTTTCTTATCCTATT TERM 4640 3491267 - 3491285 + T 70 -6 -4.2074 | opp_overlap 3491267, overlap 3491278 ATTCGAAAAAAAAAT CCTTCATT CTC GGTGAAGG TTTATGTATTAAACC TERM 4641 3491507 - 3491485 - T 70 -3.4 -5.34555 | opp_overlap 3491489, overlap 3491489 3491491 3491504 TCAGACTATAAAAAA TTAATACCTC GAC GAGGAATTCA ATCCTGCTATAGCGG TERM 4642 3491619 - 3491601 - T 70 -7.6 -3.42069 | overlap 3491599 TGAACCTCAATAACA TTTTTTCA TCT TGAAAAAA CTATGCCTCCATTAG CLH_3229 3492152 - 3491970 - | hypothetical protein TERM 4643 3492270 - 3492228 - R 80 -2.9 -6.09888 | overlap 3492231 TCTTAAGAAAAAAAA TAAGAAACACATAATCTAA ATTTA TTAAAAAATGTGTTTCATA ATTATTTTGTTAAAC TERM 4644 3492267 - 3492231 - R 70 -4.6 -5.08831 | overlap 3492228 TAAGAAAAAAAATAA GAAACACATAATCTAA ATTTA TTAAAAAATGTGTTTC ATAATTATTTTGTTA TERM 4645 3492658 - 3492632 - R 93 -6.7 -5.8187 | opp_overlap 3492632 TATGTAATAAAAAAA TTCTACACTAA ATATA TTAGAGTAGAA TTTTTCAGTTTTTTT TERM 4646 3492632 - 3492658 + r 80 -6.7 -4.97888 | opp_overlap 3492632 TATGTAATAAAAAAA TTCTACACTAA ATATA TTAGAGTAGAA TTTTTCAGTTTTTTT CLH_3231 3493221 - 3492679 - | PAP2 family protein CLH_3232 3493773 - 3493300 - | tRNA-specific adenosine deaminase TERM 4647 3494062 - 3494097 + r 80 -9.9 -2.91042 | opp_overlap 3494067, overlap 3494067 ATTAGTATAACTTAC AAAAAGACTGCTGAT TATTTT GTCAGCAGTCTTTTA TAATTAGTTATTATC TERM 4648 3494092 - 3494067 - R 100 -9.1 -4.93318 | opp_overlap 3494062 3494067 TATAACTTACAAAAA GACTGCTGA TTATTTTG TCAGCAGTC TTTTATAATTAGTTA TERM 4649 3494067 - 3494092 + r 100 -9.8 -4.58213 | opp_overlap 3494067, overlap 3494062 TATAACTTACAAAAA GACTGCTGAT TATTTT GTCAGCAGTC TTTTATAATTAGTTA CLH_3233 3495354 - 3494101 - | putative membrane CBS domain protein CLH_3234 3496651 - 3495713 - | fructokinase TERM 4650 3496539 - 3496555 + g 84 -3.5 -5.77853 | opp_overlap 3496539 CTTGCCGCTACATTA GCTGGAG CTC CACCTGC TTTTTTTTCAAACTT CLH_3235 3498104 - 3496644 - | sucrose-6-phosphate hydrolase TERM 4651 3497346 - 3497367 + g 71 -4.6 -4.88217 | ATCTAAATCTCCTAT TATATATC CTGATT GATATATA TTTTGATTTTTTAAT CLH_3236 3499115 - 3498123 - | sucrose repressor TERM 4652 3499273 - 3499230 - R 75 -8.5 -3.50219 | opp_overlap 3499221 3499230 3499233, overlap 3499233 AATAGTTTTATATAA TGATATAGATTTAGTAAGA AATTAA TCCCACTAAATCTATATAA TATTTTTATCTTAAG TERM 4653 3499270 - 3499233 - R 80 -10.2 -2.89 | opp_overlap 3499221 3499233 3499230, overlap 3499230 AGTTTTATATAATGA TATAGATTTAGTAAGA AATTAA TCCCACTAAATCTATA TAATATTTTTATCTT CLH_3237 3500646 - 3499291 - | pts system, sucrose-specific iibc component TERM 4654 3501119 - 3501106 - R 86 -3.8 -6.14618 | opp_overlap 3501106 TACAAAATAAAAAAA GCCT TGTTAC AGGC TTAATAGAATTTGAT CLH_3238 3501310 - 3501149 - | hypothetical protein CLH_3239 3501871 - 3501467 - | hypothetical protein TERM 4655 3502035 - 3502051 + r 71 -6.7 -4.13767 | AATGAGCGTCACTCC TGATTAA AAA TTAATCA TTTTGCGATCGCCCA CLH_3240 3502549 - 3502082 - | hypothetical protein TERM 4656 3502953 - 3502931 - R 100 -8.5 -5.82281 | opp_overlap 3502931 AAAGATATAAAAAAA GTGCCATGT GCGTA ACATGACAC TTTTATAGAGTATTT TERM 4657 3502931 - 3502953 + r 72 -6.3 -4.43221 | opp_overlap 3502931 AAAGATATAAAAAAA GTGCCATGT GCGTA ACATGACAC TTTTATAGAGTATTT trpA 3503754 - 3502987 - | tryptophan synthase, alpha subunit CLH_3242 3504856 - 3503708 - | NADPH-dependent butanol dehydrogenase CLH_3243 3505761 - 3504967 - | hypothetical protein TERM 4658 3505406 - 3505389 - GH 72 -4.9 -4.95484 | CATCAGTAAATAAAA CAGTATC TACA AATACTG GAATCCTAACAAATG CLH_3245 3505712 - 3505825 + | hypothetical protein CLH_3244 3506539 - 3505784 - | uridine phosphorylase TERM 4659 3505983 - 3505994 + g 73 -3 -5.37865 | TCCATATCAATTCCT GTTA CTCT TAAC TTTTTTAATTCTTCA CLH_3246 3507489 - 3506539 - | kinase, PfkB family CLH_3247 3508071 - 3507505 - | isochorismatase family protein CLH_3248 3509005 - 3508091 - | inner-membrane translocator CLH_3249 3510066 - 3509005 - | sugar ABC transporter, permease protein CLH_3250 3511610 - 3510063 - | ribose import ATP-binding protein RbsA CLH_3251 3512816 - 3511632 - | putative basic membrane lipoprotein TERM 4660 3512585 - 3512599 + g 81 -7.2 -4.66537 | CTGATGGTACTCCAT TTGTTG GTT CAACAA TTTTATATTCACAGC CLH_3252 3513610 - 3512882 - | transcriptional regulator TERM 4661 3513637 - 3513682 + r 100 -13.7 -3.48668 | opp_overlap 3513650, overlap 3513636 3513639 ACTTTATTTTAATTT TATGTTATGACAACATAAC ATCATGTC GTTATGTTGTCATGACATG TTATAATCTAATAAT TERM 4662 3513639 - 3513680 + r 100 -14.1 -3.31365 | opp_overlap 3513650, overlap 3513636 3513637 TTTATTTTAATTTTA TGTTATGACAACATAAC ATCATGTC GTTATGTTGTCATGACA TGTTATAATCTAATA TERM 4663 3513930 - 3513950 + r 73 -2.7 -5.72254 | opp_overlap 3513930 AATGCAGTACAGGAA TAATAATAT GGC ATATGATTA TTTTTTATTCTTTAG TERM 4664 3514050 - 3514073 + r 80 -6.8 -5.01042 | opp_overlap 3514050 CTAAAAAATAAAAAA GTATTCCAAA TTAT TATGGAATAC TTTTTCATTTAACTT TERM 4665 3514073 - 3514050 - R 100 -6.8 -6.04324 | opp_overlap 3514050 CTAAAAAATAAAAAA GTATTCCAAA TTAT TATGGAATAC TTTTTCATTTAACTT CLH_3253 3514803 - 3514078 - | transcriptional regulator TERM 4666 3514418 - 3514434 + g 81 -8.1 -4.33258 | opp_overlap 3514417, overlap 3514428 TCTGCAAGTAGAATT CTCTTTA TAT TAAAGAG TTTATCTTTAGGCAT TERM 4667 3515004 - 3514968 - R 72 -8.3 -3.16191 | opp_overlap 3514968 3514976, overlap 3514976 TTACATTTTTACTAA TATGTAAACATATAACT AAT AGTAATATGTTTATATA TTAGTGTCAACAACA TERM 4668 3514968 - 3515004 + r 87 -10.5 -3.25823 | opp_overlap 3514968 3514976, overlap 3514976 TTACATTTTTACTAA TATGTAAACATATAACT AAT AGTAATATGTTTATATA TTAGTGTCAACAACA TERM 4669 3515054 - 3515087 + r 84 -9.7 -3.70033 | opp_overlap 3515042 3515059, overlap 3515059 TACTTTTTAAATGTC AAAAATGGCTCAACC TTAT GGTTAAGCCATTTTA TTATGTGTATTGGTA TERM 4670 3515059 - 3515082 + r 95 -9.6 -4.88495 | opp_overlap 3515059, overlap 3515054 TTTAAATGTCAAAAA TGGCTCAACC TTAT GGTTAAGCCA TTTTATTATGTGTAT TERM 4671 3515082 - 3515059 - R 100 -11.8 -4.70879 | opp_overlap 3515059 3515054 TTTAAATGTCAAAAA TGGCTCAACC TTAT GGTTAAGCCA TTTTATTATGTGTAT TERM 4672 3515128 - 3515148 + r 72 -7.5 -3.57797 | overlap 3515130 GAATCGAACCTACAT CTGTCCCTT AGG AGGGGACTG TTCTATCCATTTAAC TERM 4673 3515130 - 3515146 + r 77 -8.7 -3.36054 | overlap 3515128 ATCGAACCTACATCT GTCCCTT AGG AGGGGAC TGTTCTATCCATTTA CLH_3255 3516149 - 3515493 - | hypothetical protein CLH_3256 3518545 - 3516173 - | P-type ATPase - metal cation transport CLH_3257 3518844 - 3519563 + | 1-acyl-sn-glycerol-3-phosphate acyltransferase TERM 4674 3519591 - 3519607 + F 70 -3.7 -5.22039 | opp_overlap 3519591 TTATAAATTGCAAAA CTTTCAA AAT TTGTAAG TTTTTTCGATTTGAC CLH_3258 3519719 - 3521299 + | ATP-dependent RNA helicase DbpA TERM 4675 3521315 - 3521349 + T 100 -14.6 -3.3767 | opp_overlap 3521320, overlap 3521320 TATTTAGTACTTTTA CAAAATTAGGGAAGAT TAA ATCTTCCCTAATTTTA ATTTTCTATATAATT TERM 4676 3521320 - 3521344 + T 100 -14.5 -4.75518 | opp_overlap 3521320, overlap 3521315 AGTACTTTTACAAAA TTAGGGAAGAT TAA ATCTTCCCTAA TTTTAATTTTCTATA TERM 4677 3521344 - 3521320 - T 100 -14.5 -4.3898 | opp_overlap 3521320 3521315 AGTACTTTTACAAAA TTAGGGAAGAT TAA ATCTTCCCTAA TTTTAATTTTCTATA CLH_3259 3521868 - 3521347 - | hypothetical protein TERM 4678 3521912 - 3521932 + r 81 -7.1 -4.77698 | opp_overlap 3521905 3521912, overlap 3521902 TTATATTATTAAAAA TAATTTTAA ATG TTAAAATTA TTTATTTTCATATTA TERM 4679 3521932 - 3521912 - R 81 -7.1 -4.79223 | opp_overlap 3521902 3521912, overlap 3521905 TTATATTATTAAAAA TAATTTTAA ATG TTAAAATTA TTTATTTTCATATTA CLH_3260 3522588 - 3521968 - | HD superfamily hydrolase CLH_3261 3523979 - 3523032 - | putative phosphotransferase enzyme family TERM 4680 3524135 - 3524105 - R 100 -15.8 -5.16133 | opp_overlap 3524105 ATTATAATAGAAAAA GAGATTTAAAGAAA AAC TTTCTTTAAATCTC TTTTAATGCTTGGGT TERM 4681 3524105 - 3524135 + r 100 -15.8 -4.35742 | opp_overlap 3524105 ATTATAATAGAAAAA GAGATTTAAAGAAA AAC TTTCTTTAAATCTC TTTTAATGCTTGGGT CLH_3262 3524330 - 3524172 - | hypothetical protein CLH_3263 3524598 - 3525686 + | ATPase TERM 4682 3526054 - 3526081 + T 76 -4.2 -5.38497 | opp_overlap 3526054 ATGCAACATAAAAAA TCACATGTAGAT ATTA ATCCACATATGA TTTTTTAATTTAAAT TERM 4683 3526081 - 3526054 - T 100 -8.6 -5.48063 | opp_overlap 3526054 ATGCAACATAAAAAA TCACATGTAGAT ATTA ATCCACATATGA TTTTTTAATTTAAAT CLH_3264 3527053 - 3526109 - | ferric siderophore ABC transporter,substrate-binding protein CLH_3265 3528080 - 3527325 - | ferrichrome transport ATP-binding protein FhuC CLH_3266 3529027 - 3528077 - | ABC transporter, iron chelate uptake transporter (FeCT) family, permease protein CLH_3267 3529970 - 3529017 - | iron chelate uptake ABC transporter, FeCT family, permease protein TERM 4684 3529993 - 3530016 + H 70 -2.6 -5.62045 | opp_overlap 3529988 3529993, overlap 3529990 3529983 CCACATGTAATATAA TTAAATTACA TTTT TATAATTTAA TTTTTTCTTCTATGT TERM 4685 3530467 - 3530455 - g 70 -4.9 -4.67607 | opp_overlap 3530458, overlap 3530458 CTTTTAATAAAGAAA GAATT GAG AATTC AAAGTTTATTTATAG CLH_3268 3530163 - 3530924 + | AraC-family transcriptional regulator TERM 4686 3531255 - 3531224 - T 73 -9.1 -2.80935 | opp_overlap 3531226 3531228 3531234, overlap 3531226 3531228 3531232 3531244 ATTTTACTTACTATA TATATCAATATAT ATCAAA ATATATTGATATA TATACAAAATAACCA TERM 4687 3531323 - 3531284 - T 100 -19.8 -5.1166 | opp_overlap 3531284 CATTAAAATTAAAAA CCGTCATAAATAATAATT TTAT AATTATTATTTATGACGG TTTTTATGTACTATA TERM 4688 3531284 - 3531323 + T 100 -19.8 -5.02502 | opp_overlap 3531284 CATTAAAATTAAAAA CCGTCATAAATAATAATT TTAT AATTATTATTTATGACGG TTTTTATGTACTATA CLH_3269 3533110 - 3531449 - | sulfate permease family protein TERM 4689 3531599 - 3531609 + g 71 -2.6 -5.49579 | TTGAACATGTGTTAT TAAA AGC TTTA TTTTATTTTTTCTGC TERM 4690 3533642 - 3533594 - R 95 -11.5 -3.31334 | opp_overlap 3533602 3533607 3533640, overlap 3533602 TTAAATATAATCTAA CAAAAAAATAAAACTAAAGAACT TTT AATCCTTTAGTTTTATTTATTTA AAAATATCCCCATAT TERM 4691 3533634 - 3533602 - R 100 -10.9 -5.83226 | opp_overlap 3533602 3533607, overlap 3533594 AATCTAACAAAAAAA TAAAACTAAAGAACT TTT AATCCTTTAGTTTTA TTTATTTAAAAATAT TERM 4692 3533602 - 3533634 + r 75 -6.5 -4.43208 | opp_overlap 3533602 3533594, overlap 3533607 AATCTAACAAAAAAA TAAAACTAAAGAACT TTT AATCCTTTAGTTTTA TTTATTTAAAAATAT dapA 3534579 - 3533707 - | dihydrodipicolinate synthase TERM 4693 3534640 - 3534616 - R 100 -13.7 -4.99043 | TTGCCATAAAGAAAA CCCGTCATAGT ATT ACTATAACGGG TAGAGTTTCATTGCT CLH_3271 3534804 - 3534688 - | hypothetical protein CLH_3272 3535472 - 3536275 + | hypothetical protein TERM 4694 3536550 - 3536494 - T 100 -12.1 -4.14422 | opp_overlap 3536493 3536498, overlap 3536498 CTATATATAAAAATA TAAACGATATTACTTATAAACTCTGTT TCT AATATAACTTACAAGTAATATCGTTTA ACATTTATTTTATAT TERM 4695 3536546 - 3536498 - T 85 -8.5 -4.62163 | opp_overlap 3536493 3536498, overlap 3536494 ATATAAAAATATAAA CGATATTACTTATAAACTCTGTT TCT AATATAACTTACAAGTAATATCG TTTAACATTTATTTT CLH_3273 3537376 - 3536627 - | transporter CLH_3274 3538140 - 3537460 - | integral membrane protein TERM 4696 3538300 - 3538322 + r 73 -7.8 -3.6715 | opp_overlap 3538300 AAAGAAACTAAAAAA GAGATAGTCA TAA TAACTATCTC TTTAAACTTACCTGG TERM 4697 3538322 - 3538300 - R 100 -10 -5.48163 | opp_overlap 3538300 AAAGAAACTAAAAAA GAGATAGTCA TAA TAACTATCTC TTTAAACTTACCTGG TERM 4698 3540060 - 3540076 + r 74 -8.7 -3.05343 | CAGCGGACGAACCTT CCTGAGG AAA CCTTAGG TATTCGGCCTGTGGG TERM 4699 3540649 - 3540659 + r 71 -6.8 -4.15453 | opp_overlap 3540638 GCAACGTGGTTCGGT CCTC CAC GAGG TTTTACCCTCGCTTC TERM 4700 3540885 - 3540896 + r 75 -7.2 -4.2354 | AGGTTCTATTTCACT CCCC TCCC GGGG TTCTTTTCACCTTTC TERM 4701 3540959 - 3540974 + r 81 -10.4 -2.71011 | GTAGTATTTAGCCTT GGGAGG TGGT CCTCCC TGCTTCCCACAAGGT TERM 4702 3541126 - 3541143 + r 76 -8.5 -3.695 | GTTCTGTCCGCAACC CCAAAGA TAAA TCTTTGG TTTGGGCTCTTTCCC TERM 4703 3541270 - 3541285 + r 72 -9 -2.69489 | opp_overlap 3541270 3541272, overlap 3541267 ATTCACTTTACGATA CATGGG GTTT CCCATG TGAGTTTCCTCATTC TERM 4704 3541285 - 3541270 - R 73 -9 -2.79915 | opp_overlap 3541270 3541267, overlap 3541272 ATTCACTTTACGATA CATGGG GTTT CCCATG TGAGTTTCCTCATTC TERM 4705 3541550 - 3541522 - R 95 -10.5 -3.94 | overlap 3541524 GCAATTTTCAAAGAA CATTTTGAAAGAC TTA GTCTTTCAAAATT GAACAGAATCTACAT TERM 4706 3541548 - 3541524 - R 100 -13.1 -3.55603 | overlap 3541522 AATTTTCAAAGAACA TTTTGAAAGAC TTA GTCTTTCAAAA TTGAACAGAATCTAC TERM 4707 3541658 - 3541677 + r 75 -9.2 -2.65808 | opp_overlap 3541649 3541646, overlap 3541655 3541655 AAAGGAGGTGATCCA GCCGCAGG TTCT CCTACGGC TACCTTGTTACGACT TERM 4708 3544215 - 3544193 - R 100 -10 -5.4251 | opp_overlap 3544193 TTTATATACAAAAAA GAGATAGTCA TAA TAACTATCTC TTTAAACTTACCTGG TERM 4709 3544193 - 3544215 + r 73 -7.8 -3.6715 | opp_overlap 3544193 TTTATATACAAAAAA GAGATAGTCA TAA TAACTATCTC TTTAAACTTACCTGG TERM 4710 3545953 - 3545969 + r 74 -8.7 -3.05343 | CAGCGGACGAACCTT CCTGAGG AAA CCTTAGG TATTCGGCCTGTGGG TERM 4711 3546542 - 3546552 + r 71 -6.8 -4.15453 | opp_overlap 3546531 GCAACGTGGTTCGGT CCTC CAC GAGG TTTTACCCTCGCTTC TERM 4712 3546778 - 3546789 + r 75 -7.2 -4.2354 | AGGTTCTATTTCACT CCCC TCCC GGGG TTCTTTTCACCTTTC TERM 4713 3546852 - 3546867 + r 81 -10.4 -2.71011 | GTAGTATTTAGCCTT GGGAGG TGGT CCTCCC TGCTTCCCACAAGGT TERM 4714 3547019 - 3547036 + r 76 -8.5 -3.695 | GTTCTGTCCGCAACC CCAAAGA TAAA TCTTTGG TTTGGGCTCTTTCCC TERM 4715 3547163 - 3547178 + r 72 -9 -2.69489 | opp_overlap 3547163 3547165, overlap 3547160 ATTCACTTTACGATA CATGGG GTTT CCCATG TGAGTTTCCTCATTC TERM 4716 3547178 - 3547163 - R 73 -9 -2.79915 | opp_overlap 3547163 3547160, overlap 3547165 ATTCACTTTACGATA CATGGG GTTT CCCATG TGAGTTTCCTCATTC TERM 4717 3547443 - 3547415 - R 95 -10.5 -3.94 | overlap 3547417 GCAATTTTCAAAGAA CATTTTGAAAGAC TTA GTCTTTCAAAATT GAACAGAATCTACAT TERM 4718 3547441 - 3547417 - R 100 -13.1 -3.55603 | overlap 3547415 AATTTTCAAAGAACA TTTTGAAAGAC TTA GTCTTTCAAAA TTGAACAGAATCTAC TERM 4719 3547551 - 3547570 + r 75 -9.2 -2.65808 | opp_overlap 3547542 3547539, overlap 3547548 3547548 AAAGGAGGTGATCCA GCCGCAGG TTCT CCTACGGC TACCTTGTTACGACT TERM 4720 3548041 - 3548054 + r 72 -8.1 -3.21912 | ACCACCTGTCTTCCT GTCGC CGAA GCGAC TTCCTCGATTAAGAG TERM 4721 3550178 - 3550190 + r 74 -6.3 -4.66833 | opp_overlap 3550177 ACCGGCAACAAGTAG TGCAA TAG TTGCA TTTTTAAACTTAACC TERM 4722 3550880 - 3550896 + r 75 -5.3 -5.00895 | opp_overlap 3550887 GTAGATTGAATTCTA TATATTA TTT TAATATA TTTTTATATACTAAA TERM 4723 3550937 - 3550915 - R 100 -10 -5.24989 | opp_overlap 3550915 TTATATACTAAAAAA GAGATAGTTA TAA CAACTATCTC TTTAAACTTACCTGG TERM 4724 3550915 - 3550937 + r 84 -9.3 -3.6715 | opp_overlap 3550915 TTATATACTAAAAAA GAGATAGTT ATAAC AACTATCTC TTTAAACTTACCTGG TERM 4725 3552675 - 3552691 + r 74 -8.7 -3.05343 | CAGCGGACGAACCTT CCTGAGG AAA CCTTAGG TATTCGGCCTGTGGG TERM 4726 3553264 - 3553274 + r 71 -6.8 -4.15453 | opp_overlap 3553253 GCAACGTGGTTCGGT CCTC CAC GAGG TTTTACCCTCGCTTC TERM 4727 3553500 - 3553511 + r 75 -7.2 -4.2354 | AGGTTCTATTTCACT CCCC TCCC GGGG TTCTTTTCACCTTTC TERM 4728 3553574 - 3553589 + r 81 -10.4 -2.71011 | GTAGTATTTAGCCTT GGGAGG TGGT CCTCCC TGCTTCCCACAAGGT TERM 4729 3553741 - 3553758 + r 76 -8.5 -3.695 | GTTCTGTCCGCAACC CCAAAGA TAAA TCTTTGG TTTGGGCTCTTTCCC TERM 4730 3553885 - 3553900 + r 72 -9 -2.69489 | opp_overlap 3553885 3553887, overlap 3553882 ATTCACTTTACGATA CATGGG GTTT CCCATG TGAGTTTCCTCATTC TERM 4731 3553900 - 3553885 - R 73 -9 -2.79915 | opp_overlap 3553885 3553882, overlap 3553887 ATTCACTTTACGATA CATGGG GTTT CCCATG TGAGTTTCCTCATTC TERM 4732 3554165 - 3554137 - R 95 -10.5 -3.94 | overlap 3554139 GCAATTTTCAAAGAA CATTTTGAAAGAC TTA GTCTTTCAAAATT GAACAGAATCTACAT TERM 4733 3554163 - 3554139 - R 100 -13.1 -3.55603 | overlap 3554137 AATTTTCAAAGAACA TTTTGAAAGAC TTA GTCTTTCAAAA TTGAACAGAATCTAC TERM 4734 3554273 - 3554292 + r 75 -9.2 -2.65808 | opp_overlap 3554264 3554261, overlap 3554270 3554270 AAAGGAGGTGATCCA GCCGCAGG TTCT CCTACGGC TACCTTGTTACGACT TERM 4735 3554763 - 3554776 + r 72 -8.1 -3.21912 | ACCACCTGTCTTCCT GTCGC CGAA GCGAC TTCCTCGATTAAGAG TERM 4736 3555864 - 3555881 + r 81 -5.6 -5.31091 | GACCAAATTTTCTCA GTTGAC TTTCTT GTCAAC TTTTGTTTTATTGTG TERM 4737 3556808 - 3556830 + r 84 -9.3 -3.6715 | opp_overlap 3556808 TTATATGCTAAAAAA GAGATAGTT ATAAC AACTATCTC TTTAAACTTACCTGG TERM 4738 3556830 - 3556808 - R 100 -10 -5.07567 | opp_overlap 3556808 TTATATGCTAAAAAA GAGATAGTTA TAA CAACTATCTC TTTAAACTTACCTGG TERM 4739 3558568 - 3558584 + r 74 -8.7 -3.05343 | CAGCGGACGAACCTT CCTGAGG AAA CCTTAGG TATTCGGCCTGTGGG TERM 4740 3559157 - 3559167 + r 71 -6.8 -4.15453 | opp_overlap 3559146 GCAACGTGGTTCGGT CCTC CAC GAGG TTTTACCCTCGCTTC TERM 4741 3559393 - 3559404 + r 75 -7.2 -4.2354 | AGGTTCTATTTCACT CCCC TCCC GGGG TTCTTTTCACCTTTC TERM 4742 3559467 - 3559482 + r 81 -10.4 -2.71011 | GTAGTATTTAGCCTT GGGAGG TGGT CCTCCC TGCTTCCCACAAGGT TERM 4743 3559634 - 3559651 + r 76 -8.5 -3.695 | GTTCTGTCCGCAACC CCAAAGA TAAA TCTTTGG TTTGGGCTCTTTCCC TERM 4744 3559778 - 3559793 + r 72 -9 -2.69489 | opp_overlap 3559778 3559780, overlap 3559775 ATTCACTTTACGATA CATGGG GTTT CCCATG TGAGTTTCCTCATTC TERM 4745 3559793 - 3559778 - R 73 -9 -2.79915 | opp_overlap 3559778 3559775, overlap 3559780 ATTCACTTTACGATA CATGGG GTTT CCCATG TGAGTTTCCTCATTC TERM 4746 3560058 - 3560030 - R 95 -10.5 -3.94 | overlap 3560032 GCAATTTTCAAAGAA CATTTTGAAAGAC TTA GTCTTTCAAAATT GAACAGAATCTACAT TERM 4747 3560056 - 3560032 - R 100 -13.1 -3.55603 | overlap 3560030 AATTTTCAAAGAACA TTTTGAAAGAC TTA GTCTTTCAAAA TTGAACAGAATCTAC TERM 4748 3560166 - 3560185 + r 75 -9.2 -2.65808 | opp_overlap 3560157 3560154, overlap 3560163 3560163 AAAGGAGGTGATCCA GCCGCAGG TTCT CCTACGGC TACCTTGTTACGACT TERM 4749 3560656 - 3560669 + r 72 -8.1 -3.21912 | ACCACCTGTCTTCCT GTCGC CGAA GCGAC TTCCTCGATTAAGAG TERM 4750 3561757 - 3561774 + r 81 -5.6 -5.31091 | GACCAAATTTTCTCA GTTGAC TTTCTT GTCAAC TTTTGTTTTATTGTG TERM 4751 3562571 - 3562541 - R 93 -4.8 -6.25578 | opp_overlap 3562541 AGCAAAGAAAAAAAA TGCAGAACTAATTA AAA TAAACAGTTTTGCA CTTAATATATATATA TERM 4752 3562760 - 3562782 + r 84 -9.3 -3.6715 | opp_overlap 3562760 TTATATACTAAAAAA GAGATAGTT ATAAC AACTATCTC TTTAAACTTACCTGG TERM 4753 3562782 - 3562760 - R 100 -10 -5.24989 | opp_overlap 3562760 TTATATACTAAAAAA GAGATAGTTA TAA CAACTATCTC TTTAAACTTACCTGG TERM 4754 3564520 - 3564536 + r 74 -8.7 -3.05343 | CAGCGGACGAACCTT CCTGAGG AAA CCTTAGG TATTCGGCCTGTGGG TERM 4755 3565109 - 3565119 + r 71 -6.8 -4.15453 | opp_overlap 3565098 GCAACGTGGTTCGGT CCTC CAC GAGG TTTTACCCTCGCTTC TERM 4756 3565345 - 3565356 + r 75 -7.2 -4.2354 | AGGTTCTATTTCACT CCCC TCCC GGGG TTCTTTTCACCTTTC TERM 4757 3565419 - 3565434 + r 81 -10.4 -2.71011 | GTAGTATTTAGCCTT GGGAGG TGGT CCTCCC TGCTTCCCACAAGGT TERM 4758 3565586 - 3565603 + r 76 -8.5 -3.695 | GTTCTGTCCGCAACC CCAAAGA TAAA TCTTTGG TTTGGGCTCTTTCCC TERM 4759 3565745 - 3565730 - R 73 -9 -2.79915 | opp_overlap 3565727 3565730, overlap 3565732 ATTCACTTTACGATA CATGGG GTTT CCCATG TGAGTTTCCTCATTC TERM 4760 3565730 - 3565745 + r 72 -9 -2.69489 | opp_overlap 3565730 3565732, overlap 3565727 ATTCACTTTACGATA CATGGG GTTT CCCATG TGAGTTTCCTCATTC TERM 4761 3566010 - 3565982 - R 95 -10.5 -3.94 | overlap 3565984 GCAATTTTCAAAGAA CATTTTGAAAGAC TTA GTCTTTCAAAATT GAACAGAATCTACAT TERM 4762 3566008 - 3565984 - R 100 -13.1 -3.55603 | overlap 3565982 AATTTTCAAAGAACA TTTTGAAAGAC TTA GTCTTTCAAAA TTGAACAGAATCTAC TERM 4763 3566118 - 3566137 + r 75 -9.2 -2.65808 | opp_overlap 3566109 3566106, overlap 3566115 3566115 AAAGGAGGTGATCCA GCCGCAGG TTCT CCTACGGC TACCTTGTTACGACT TERM 4764 3566608 - 3566621 + r 72 -8.1 -3.21912 | ACCACCTGTCTTCCT GTCGC CGAA GCGAC TTCCTCGATTAAGAG CLH_3297 3568788 - 3567889 - | phospholipase, patatin family CLH_3298 3569640 - 3568822 - | protein YqfL TERM 4765 3569829 - 3569856 + H 79 -8.7 -3.69088 | AAAGTACATCTGAAT CTTAAATTAGA ATTCCA TCTAATTTAAG TTAATTTATATCTTA TERM 4766 3570139 - 3570150 + G 80 -5.8 -5.1286 | opp_overlap 3570130 ACAATAGGCATTCTA CCAC TTAT GTGG TTTTTATACTTTTTG CLH_3299 3570103 - 3570861 + | hypothetical protein CLH_3300 3571083 - 3572276 + | GTP-binding protein TERM 4767 3572325 - 3572305 - T 73 -7.1 -4.13591 | opp_overlap 3572297 3572305, overlap 3572299 3572297 TTAAGACTATATAAA TTATATATT ATA AATATATAA TTGAATAAAGCAAAC TERM 4768 3572384 - 3572416 + T 86 -3.8 -6.01725 | opp_overlap 3572384 GTAGTAAATAAAAAA GATATCC-TATTAAAT ATA ATTTA-TACGGATATC TTTTTTATTTTTATT TERM 4769 3572416 - 3572384 - T 79 -3.8 -5.68438 | opp_overlap 3572384 GTAGTAAATAAAAAA GATATCC-TATTAAAT ATA ATTTA-TACGGATATC TTTTTTATTTTTATT TERM 4770 3572474 - 3572446 - T 72 -9.1 -2.70826 | opp_overlap 3572443 3572447, overlap 3572443 3572456 TAGATGTATATATTA TGTCTTTAAATTA AAC TAATTTAAAGACT ACTTTGCTTAATCAC TERM 4771 3572447 - 3572473 + T 93 -12.6 -3.03624 | opp_overlap 3572446 3572443 3572456, overlap 3572443 AGATGTATATATTAT GTCTTTAAATTA AAC TAATTTAAAGAC TACTTTGCTTAATCA TERM 4772 3572663 - 3572688 + T 100 -12.1 -4.2828 | opp_overlap 3572654 3572663 CTAAAATAAAAAAAA TCGTTTCTTTA AAAT TAAAGAAACGA TTTTGGTGGCTCACC TERM 4773 3572688 - 3572663 - T 100 -12.1 -6.34616 | opp_overlap 3572663, overlap 3572654 CTAAAATAAAAAAAA TCGTTTCTTTA AAAT TAAAGAAACGA TTTTGGTGGCTCACC motB 3573899 - 3573165 - | chemotaxis MotB protein CLH_3304 3574680 - 3573904 - | chemotaxis protein MotA TERM 4774 3574955 - 3574918 - R 100 -10.2 -5.56568 | opp_overlap 3574918 ATATTACTAAAAAAA GTCTATAAAGAATCTA AATATA TAAATTCTTTACAGAC TTTTAACATTTTTAA CLH_3305 3575943 - 3574996 - | L-lactate dehydrogenase TERM 4775 3576330 - 3576360 + H 95 -12.8 -3.73914 | opp_overlap 3576318 3576335, overlap 3576335 TAATTTTTTATAAAA AAAAAGCTACTGAA AAA TTCAGTAGCTTTTA TTATTGGTGCGTCAT TERM 4776 3576355 - 3576335 - H 100 -12.7 -6.22802 | opp_overlap 3576330 3576335 TTTTATAAAAAAAAA GCTACTGAA AAA TTCAGTAGC TTTTATTATTGGTGC TERM 4777 3576335 - 3576355 + H 100 -12.7 -4.92757 | opp_overlap 3576335, overlap 3576330 TTTTATAAAAAAAAA GCTACTGAA AAA TTCAGTAGC TTTTATTATTGGTGC TERM 4778 3576604 - 3576626 + H 86 -9.2 -3.99494 | TTAGTTAAAACTGTA CTCCTTTAGC TAT GCTAAATGAG TTATTATTCAATTGA TERM 4779 3578245 - 3578261 + H 74 -8.7 -3.05343 | CAGCGGACGAACCTT CCTGAGG AAA CCTTAGG TATTCGGCCTGTGGG TERM 4780 3578834 - 3578844 + H 71 -6.8 -4.15453 | opp_overlap 3578823 GCAACGTGGTTCGGT CCTC CAC GAGG TTTTACCCTCGCTTC TERM 4781 3579070 - 3579081 + H 75 -7.2 -4.2354 | AGGTTCTATTTCACT CCCC TCCC GGGG TTCTTTTCACCTTTC TERM 4782 3579144 - 3579159 + H 81 -10.4 -2.71011 | GTAGTATTTAGCCTT GGGAGG TGGT CCTCCC TGCTTCCCACAAGGT TERM 4783 3579311 - 3579328 + H 76 -8.5 -3.695 | GTTCTGTCCGCAACC CCAAAGA TAAA TCTTTGG TTTGGGCTCTTTCCC TERM 4784 3579455 - 3579470 + H 72 -9 -2.69489 | opp_overlap 3579455 3579457, overlap 3579452 ATTCACTTTACGATA CATGGG GTTT CCCATG TGAGTTTCCTCATTC TERM 4785 3579470 - 3579455 - H 73 -9 -2.79915 | opp_overlap 3579455 3579452, overlap 3579457 ATTCACTTTACGATA CATGGG GTTT CCCATG TGAGTTTCCTCATTC TERM 4786 3579735 - 3579707 - H 95 -10.5 -3.94 | overlap 3579709 GCAATTTTCAAAGAA CATTTTGAAAGAC TTA GTCTTTCAAAATT GAACAGAATCTACAT TERM 4787 3579733 - 3579709 - H 100 -13.1 -3.55603 | overlap 3579707 AATTTTCAAAGAACA TTTTGAAAGAC TTA GTCTTTCAAAA TTGAACAGAATCTAC TERM 4788 3579843 - 3579862 + H 75 -9.2 -2.65808 | opp_overlap 3579834 3579831, overlap 3579840 3579840 AAAGGAGGTGATCCA GCCGCAGG TTCT CCTACGGC TACCTTGTTACGACT TERM 4789 3580333 - 3580346 + H 72 -8.1 -3.21912 | ACCACCTGTCTTCCT GTCGC CGAA GCGAC TTCCTCGATTAAGAG TERM 4790 3581434 - 3581451 + H 81 -5.6 -5.31091 | GACCAAATTTTCTCA GTTGAC TTTCTT GTCAAC TTTTGTTTTATTGTG TERM 4791 3583280 - 3583267 - g 75 -5.3 -4.91511 | ACTGTAGCAGAAAAA TCACA GGAA TGTGA AAATATAACCAAAAA CLH_3311 3582004 - 3584043 + | putative methyl-accepting chemotaxis protein TERM 4792 3584108 - 3584059 - T 100 -13.3 -5.80364 | gap 1, opp_overlap 3584061, overlap 3584060 3584061 3584063 ATTCCAATAAAAAAA TCTAGTCACCAATATAATTGTAGT TGA ACT-CAATTATATTGGTGACTATT TTATTAAGTTATTTC TERM 4793 3584107 - 3584060 - T 100 -16.8 -4.06592 | gap 1, opp_overlap 3584061, overlap 3584059 3584061 3584063 TTCCAATAAAAAAAT CTAGTCACCAATATAATTGTAGT TGA ACT-CAATTATATTGGTGACTAT TTTATTAAGTTATTT TERM 4794 3584061 - 3584106 + T 100 -20.3 -4.74539 | gap 1, opp_overlap 3584061 3584060 3584059 3584063 TCCAATAAAAAAATC TAGTCACCAATATAATTGTAGT TGA ACT-CAATTATATTGGTGACTA TTTTATTAAGTTATT TERM 4795 3584106 - 3584061 - T 100 -20.3 -3.0287 | gap 1, opp_overlap 3584061, overlap 3584060 3584059 3584063 TCCAATAAAAAAATC TAGTCACCAATATAATTGTAGT TGA ACT-CAATTATATTGGTGACTA TTTTATTAAGTTATT TERM 4796 3584104 - 3584063 - T 100 -18.5 -3.04947 | gap 1, opp_overlap 3584061, overlap 3584061 3584060 3584059 CAATAAAAAAATCTA GTCACCAATATAATTGTAGT TGA ACT-CAATTATATTGGTGAC TATTTTATTAAGTTA CLH_3312 3585258 - 3584248 - | two-component sensor histidine kinase CLH_3313 3585926 - 3585255 - | DNA-binding response regulator TERM 4797 3586030 - 3585992 - R 95 -9.2 -4.84359 | opp_overlap 3585992 CTATCTCTATAAAAA TAACTACCTTAAATAAAA TTT TATTATCTAAAGTAGTTA TTTTTTATTCTTATT TERM 4798 3585992 - 3586030 + r 84 -4.8 -5.70522 | opp_overlap 3585992 CTATCTCTATAAAAA TAACTACCTTAAATAAAA TTT TATTATCTAAAGTAGTTA TTTTTTATTCTTATT CLH_3314 3588066 - 3586051 - | ABC transporter, permease protein TERM 4799 3586617 - 3586595 - G 73 -7.8 -3.71378 | opp_overlap 3586597, overlap 3586597 TAGTTTACATTGAAA TACATTGAAC TAG GTTCAATGTT ATCTACAACATCATC TERM 4800 3586597 - 3586615 + g 88 -10.4 -3.48924 | opp_overlap 3586595 3586597 GTTTACATTGAAATA CATTGAAC TAG GTTCAATG TTATCTACAACATCA TERM 4801 3586615 - 3586597 - G 88 -10.4 -3.43773 | opp_overlap 3586597, overlap 3586595 GTTTACATTGAAATA CATTGAAC TAG GTTCAATG TTATCTACAACATCA TERM 4802 3587882 - 3587871 - G 74 -2.2 -5.59962 | CAAAAGAAATAAAAA CTGA AATT CCAG AAATAAGATTATTTA CLH_3315 3588823 - 3588056 - | bacitracin export ATP-binding protein BceA TERM 4803 3589015 - 3589043 + r 100 -12.7 -3.94 | overlap 3589017 AATTGATCCTTTTAC TATTTTGAAAGAC TAA GTCTTTCAAAATG TTCTTTGAAAATTGC TERM 4804 3589017 - 3589041 + r 100 -13.1 -3.55603 | overlap 3589015 TTGATCCTTTTACTA TTTTGAAAGAC TAA GTCTTTCAAAA TGTTCTTTGAAAATT TERM 4805 3589182 - 3589147 - R 100 -8 -5.61596 | gap 1, opp_overlap 3589149 3589155 ATCTGTACAAAAAAA GATATTTCT-AAAATAA ATT TTATTTTTAGAAATACC CCCACATTGGACTAT CLH_3316 3589625 - 3589194 - | transcriptional regulator, MarR family TERM 4806 3589893 - 3589860 - R 74 -8.5 -3.34062 | opp_overlap 3589862 3589864 3589870, overlap 3589852 3589858 AAGCTAACTATAATA TATAGAATATTAATA AAAT TATTTATATTCTATA TCGTAGCTAACAAAC CLH_3317 3590244 - 3589933 - | thioredoxin CLH_3318 3591692 - 3590448 - | HD domain protein TERM 4807 3591096 - 3591107 + g 70 -3 -5.24129 | opp_overlap 3591104, overlap 3591100 3591103 3591104 3591106 TGCTATAATTTCTTC TCTA CTAA TAGA TTTTTTATCAAAAAA TERM 4808 3591104 - 3591126 + g 75 -9.4 -2.6805 | opp_overlap 3591104, overlap 3591096 3591103 3591100 3591106 TTTCTTCTCTACTAA TAGATTTTTT ATC AAAAAATCTA ATTAATTCATCTTTA TERM 4809 3591126 - 3591104 - G 78 -9.4 -3.14132 | opp_overlap 3591096 3591104 3591103 3591100 3591106 TTTCTTCTCTACTAA TAGATTTTTT ATC AAAAAATCTA ATTAATTCATCTTTA TERM 4810 3592068 - 3592022 - R 75 -4.1 -5.60689 | opp_overlap 3592028 3592053 TTATACAATAAAAAA GAGACCTAATTTTCAAATT ATTATCTCA AATTTAAAAATTAACTCTC TTATTTATTGTCCAT CLH_3319 3592804 - 3592169 - | hypothetical protein TERM 4811 3592876 - 3592904 + r 95 -12.7 -3.49837 | opp_overlap 3592875 3592870 3592879, overlap 3592879 ATATTAAAATTATAT CAATATTTGGACA TAT TGTCTAAATATTG TATTTAAATTATATA TERM 4812 3592879 - 3592901 + r 78 -8.6 -3.86975 | opp_overlap 3592879 3592875 3592870, overlap 3592876 TTAAAATTATATCAA TATTTGGACA TAT TGTCTAAATA TTGTATTTAAATTAT CLH_3320 3593408 - 3593016 - | hypothetical protein CLH_3321 3593841 - 3593410 - | MarR family regulatory protein CLH_3322 3594318 - 3593860 - | hypothetical protein TERM 4813 3594500 - 3594458 - R 100 -11.6 -4.90296 | opp_overlap 3594461 3594464, overlap 3594461 AAAACTCTATAAAAA CAATAAGGATGTATCAAAAC AAA ATATTGATACATCCTTATTT CAAGTTATATAAATT TERM 4814 3594461 - 3594497 + r 95 -12.6 -3.70811 | opp_overlap 3594458 3594461, overlap 3594464 ACTCTATAAAAACAA TAAGGATGTATCAAAA CAAAA TATTGATACATCCTTA TTTCAAGTTATATAA TERM 4815 3594497 - 3594461 - R 100 -13.3 -4.53475 | opp_overlap 3594461 3594464, overlap 3594458 ACTCTATAAAAACAA TAAGGATGTATCAAAAC AAA ATATTGATACATCCTTA TTTCAAGTTATATAA TERM 4816 3594464 - 3594494 + r 93 -9.9 -3.97689 | opp_overlap 3594461 3594458, overlap 3594461 CTATAAAAACAATAA GGATGTATCAAAA CAAAA TATTGATACATCC TTATTTCAAGTTATA CLH_3323 3595626 - 3594700 - | transketolase CLH_3324 3596455 - 3595643 - | transketolase TERM 4817 3595877 - 3595896 + g 78 -8 -3.9398 | overlap 3595880 TTTCCATCTATCTGC TAATGGAT CTAC ATCCATTA TTTCTGACGTTCTAC TERM 4818 3596507 - 3596489 - R 100 -10.4 -5.07567 | opp_overlap 3596489 TTATATTTGAAAAAA TGAGGAAT TAA ATTCCTCA TTTTTTTATTATATA TERM 4819 3596489 - 3596507 + r 100 -10.4 -5.9218 | opp_overlap 3596489 TTATATTTGAAAAAA TGAGGAAT TAA ATTCCTCA TTTTTTTATTATATA CLH_3325 3597884 - 3596535 - | ascorbate-specific PTS system enzyme IIC TERM 4820 3597920 - 3597952 + r 100 -13.7 -4.39828 | opp_overlap 3597927, overlap 3597922 TTAAATATTTAATTT TTGTAAAGTGGTAAT TAA ATTACCACTTTACTA TTTTATAGACCTATT TERM 4821 3597922 - 3597950 + r 100 -16.3 -3.80133 | opp_overlap 3597927, overlap 3597920 AAATATTTAATTTTT GTAAAGTGGTAAT TAA ATTACCACTTTAC TATTTTATAGACCTA TERM 4822 3597945 - 3597927 - R 91 -10.4 -3.55622 | opp_overlap 3597922 3597920 TTTAATTTTTGTAAA GTGGTAAT TAA ATTACCAC TTTACTATTTTATAG CLH_3326 3598230 - 3597955 - | PTS sysytem, mannitol-specific enzyme II, B component CLH_3327 3598634 - 3598233 - | phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 CLH_3328 3600535 - 3598649 - | putative phosphotransferase system mannitol/fructose-specific IIA domain TERM 4823 3601074 - 3601046 - R 76 -2.5 -5.9218 | TATACAACAAAAAAA GCTATAGAGAT GTTTCTT ACCCCTATAAC TTTCTCGAATTTAAA CLH_3329 3601614 - 3601138 - | glutathione peroxidase TERM 4824 3601814 - 3601783 - R 70 -2.5 -5.626 | gap 1, opp_overlap 3601802 TATTCTATAAAAAAA TAGTAGTC-ACT TTAAAAGTT AGTAGACTACTA TTTATATTCCTATTA CLH_3330 3603491 - 3601827 - | oligo-1,6-glucosidase CLH_3331 3604563 - 3603646 - | putative transcriptional regulator, AraC family CLH_3332 3606033 - 3605035 - | phosphate permease CLH_3333 3606658 - 3606026 - | hypothetical protein CLH_3334 3606956 - 3608623 + | hypothetical protein TERM 4825 3608864 - 3608819 - f 100 -10.4 -5.02074 | gap 1, opp_overlap 3608819 3608826 CTATCTCCTAAAAAA TAATAAA-TAAACTAATTATT TACAC AATAATTAGTTTATTTTATTA TTTCCATAAATCATT TERM 4826 3608819 - 3608864 + F 91 -10.4 -3.67564 | gap 1, opp_overlap 3608819, overlap 3608826 CTATCTCCTAAAAAA TAATAAA-TAAACTAATTATT TACAC AATAATTAGTTTATTTTATTA TTTCCATAAATCATT TERM 4827 3608826 - 3608856 + F 100 -10.1 -5.011 | opp_overlap 3608819, overlap 3608819 CTAAAAAATAATAAA TAAACTAATTATT TACAC AATAATTAGTTTA TTTTATTATTTCCAT CLH_3335 3609125 - 3610225 + | glycerophosphoryl diester phosphodiesterase TERM 4828 3610343 - 3610298 - T 100 -7.8 -5.50774 | opp_overlap 3610301, overlap 3610301 CAGAATAAATAAAAA TAACTTACCGATAGTTTACA TTTTTC TTTTAACTATCGGTAAGTTT TAATTAATCTCTATA TERM 4829 3610340 - 3610301 - T 95 -9.5 -4.78345 | opp_overlap 3610301, overlap 3610298 AATAAATAAAAATAA CTTACCGATAGTTTACA TTTTTC TTTTAACTATCGGTAAG TTTTAATTAATCTCT TERM 4830 3610301 - 3610340 + T 93 -9.5 -4.48333 | opp_overlap 3610298 3610301 AATAAATAAAAATAA CTTACCGATAGTTTACA TTTTTC TTTTAACTATCGGTAAG TTTTAATTAATCTCT CLH_3336 3610901 - 3610389 - | flavodoxin family protein CLH_3337 3612058 - 3610958 - | putative oxidoreductase TERM 4831 3611387 - 3611399 + g 72 -3.4 -5.20781 | TGTCGGTCCACCTTT TCCT ATATC AGGA TTTTCTTTTCTAATA TERM 4832 3611987 - 3612000 + g 77 -3.1 -5.58051 | ATTTCCTAATGAAGT TGGTG CAAA CACTA TTTTATTTTTTATTT CLH_3338 3612511 - 3612074 - | MarR-family transcriptional regulator TERM 4833 3612347 - 3612358 + g 70 -2.2 -5.4251 | ACTTATTTCATTTAA CTTG CTAC CAGG TTTTTTATATATAAA TERM 4834 3612630 - 3612595 - R 100 -5.6 -6.34616 | opp_overlap 3612595 CTAAAATAAAAAAAA CTCTAATTAAGATATA TTTT TTTATCCTAAATAGAG TTTTTATATATTATT CLH_3339 3614021 - 3612723 - | putative ATP-dependent RNA helicase RhlE TERM 4835 3614314 - 3614335 + r 95 -11.7 -3.32343 | opp_overlap 3614314 AGAAATATCAAAAAA GGTTGTAGT TTAA ACTACAACC TTATAACAATCTAAA TERM 4836 3614335 - 3614314 - R 100 -11.7 -5.34055 | opp_overlap 3614314 AGAAATATCAAAAAA GGTTGTAGT TTAA ACTACAACC TTATAACAATCTAAA CLH_3340 3614504 - 3614352 - | hypothetical protein TERM 4837 3614404 - 3614420 + g 73 -3 -5.38054 | gap 1, overlap 3614404 GCTGCACATCTTGTT GG-TTCG TTAT CGAATCC TTTTTCTTTGTAGAA CLH_3341 3615282 - 3614776 - | hypothetical membrane protein TERM 4838 3615359 - 3615316 - R 100 -7.6 -5.96894 | gap 1, opp_overlap 3615316 ACTTAAATAAAAAAA TGCGTTATATCGACGA-CA AGTGGTA TGACCGTCGGTACAACGCA TTGCTCTCATAGTAT CLH_3342 3615924 - 3615445 - | hypothetical protein CLH_3343 3616873 - 3616214 - | hypothetical protein TERM 4839 3616372 - 3616389 + g 72 -4.9 -4.88895 | TATTTAATCTTTTTG TATTTGC AGGT GCAGATA TTTCTTTATTTCTTT TERM 4840 3616716 - 3616704 - G 70 -6.3 -4.09864 | opp_overlap 3616703 ATTGATCCTCCAAAA GCAAT TTT ATTGC CTGGTTCTATTATGT TERM 4841 3616984 - 3617004 + r 71 -7.1 -3.99494 | opp_overlap 3616989, overlap 3616989 ATTTTCACTTAATTT TAAAATATA TAT TATATTTTA TTATTCTTAAGTTCC TERM 4842 3617084 - 3617100 + r 73 -4.5 -5.11063 | overlap 3617086 TATATGATTCTTTCT TAGTAAA AGG TTTACTG TTTTTATTAACTAAT TERM 4843 3617222 - 3617195 - R 73 -7.1 -4.12532 | opp_overlap 3617200 3617218, overlap 3617200 TTTTCTATATATAAA TAAAAGGGATC ATTGTA GATCCCTTTTT AGAAAACTATTTACC TERM 4844 3617200 - 3617217 + r 79 -7 -4.57837 | opp_overlap 3617200 3617195 TATATATAAATAAAA GGGATC ATTGTA GATCCC TTTTTAGAAAACTAT TERM 4845 3617217 - 3617200 - R 83 -7 -5.07523 | opp_overlap 3617200, overlap 3617195 TATATATAAATAAAA GGGATC ATTGTA GATCCC TTTTTAGAAAACTAT CLH_3344 3617726 - 3617229 - | SEC-C domain protein TERM 4846 3617316 - 3617330 + g 72 -5.8 -4.50298 | opp_overlap 3617315, overlap 3617306 ATTATTTCTAATGAT TTTAGA ATC TCTAAA TTGTTTTTGAATTTC CLH_3345 3618580 - 3617789 - | metallo-beta-lactamase family protein TERM 4847 3618330 - 3618344 + g 71 -7.2 -3.74345 | opp_overlap 3618330 AATGATTCCATAGCA TTCCAA GTG TTGGAA TTTGCATATATCGGT murA 3619877 - 3618615 - | UDP-N-acetylglucosamine 1-carboxyvinyltransferase TERM 4848 3619303 - 3619320 + g 70 -6.3 -4.10161 | opp_overlap 3619303, overlap 3619290 GCCATGTCAACTACA TGTGGTT CTTT AGCCACA TTTTCAAGAGTAGTA CLH_3347 3620271 - 3620810 + | hypothetical protein CLH_3348 3620987 - 3621463 + | dUTPase superfamily TERM 4849 3621452 - 3621474 + F 100 -10.7 -6.02919 | opp_overlap 3621452 AATACTTACGAAAAA GTAGCTCTT TAATT AAGAGCTAC TTTTTTTCTTTATAA TERM 4850 3621474 - 3621452 - f 100 -10.7 -4.76644 | opp_overlap 3621452 AATACTTACGAAAAA GTAGCTCTT TAATT AAGAGCTAC TTTTTTTCTTTATAA CLH_3349 3621653 - 3622084 + | hypothetical protein CLH_3350 3622142 - 3622960 + | metallo-beta-lactamase domain protein TERM 4851 3622981 - 3623016 + F 81 -8 -4.46267 | opp_overlap 3622981 3622983 3622989 TTCTTTATTCATATA TATTTAAATATACATT TAAT AATATATATTTAAATA TTTTAGTTAACTTGT TERM 4852 3623016 - 3622981 - f 80 -10.2 -2.91264 | opp_overlap 3622981, overlap 3622983 3622989 TTCTTTATTCATATA TATTTAAATATACATT TAAT AATATATATTTAAATA TTTTAGTTAACTTGT TERM 4853 3623014 - 3622983 - f 71 -8.4 -3.0094 | opp_overlap 3622981, overlap 3622981 3622989 CTTTATTCATATATA TTTAAATATACATT TAAT AATATATATTTAAA TATTTTAGTTAACTT CLH_3351 3623094 - 3624299 + | subtilase family protein TERM 4854 3624310 - 3624342 + T 100 -9.5 -6.09888 | opp_overlap 3624310 CCTAAGTTATAAAAA TAATAAATACTATAA ATA TTTTAGTATTTATTA TTTTTTTTATTCAGC TERM 4855 3624342 - 3624310 - T 100 -9.5 -4.91712 | opp_overlap 3624310 CCTAAGTTATAAAAA TAATAAATACTATAA ATA TTTTAGTATTTATTA TTTTTTTTATTCAGC CLH_3352 3625542 - 3624409 - | peptidase, M23/M37 family CLH_3353 3625769 - 3626758 + | DNA replication protein DnaD TERM 4856 3627249 - 3627239 - g 71 -2.6 -5.4505 | opp_overlap 3627239 TTCTCCAAGAAAAAA TATT GAA AATA TTTTAGAATACATTT CLH_3354 3626751 - 3627731 + | DNA replication protein DnaC TERM 4857 3627740 - 3627767 + T 100 -14.4 -3.64912 | opp_overlap 3627740 CAAATAATAAAAAAA GTAGCTTCTAAT AATT ATTAGAAGCTAC TTATATATATAAATG TERM 4858 3627767 - 3627740 - T 100 -14.4 -6.01369 | opp_overlap 3627740 CAAATAATAAAAAAA GTAGCTTCTAAT AATT ATTAGAAGCTAC TTATATATATAAATG TERM 4859 3627825 - 3627809 - T 95 -7.3 -5.93252 | opp_overlap 3627809 TTTAAAAACAAAAAA CTCTAGC AAA ACTAGAG TTTAATTGGCGACTC TERM 4860 3628808 - 3628821 + T 93 -6.7 -5.83211 | GTCTTAACCGCTTGA CCAAG GAGC CTTGG TTTTTTGTTTTCGTG CLH_3366 3629516 - 3628932 - | hypothetical protein TERM 4861 3630129 - 3630106 - g 84 -3.3 -5.88061 | AAAAAATCAAAAAAA TTCATTATT AATACA AACAATGAA GAATTTAAAGAATTT CLH_3367 3629680 - 3630924 + | hypothetical protein TERM 4862 3631083 - 3631030 - T 83 -7.8 -4.61633 | gap 1, opp_overlap 3631032 3631036 3631080, overlap 3631032 ATATAGTTTTAAAAA CATAAAGCCATATCAAAGTATAAGC ATTAA ACAC-TACTTTGATATGGCTTTATT ATAATTAATATTATT TERM 4863 3631081 - 3631032 - T 95 -10.4 -3.91908 | gap 1, opp_overlap 3631032 3631036 3631080, overlap 3631030 ATAGTTTTAAAAACA TAAAGCCATATCAAAGTATAAGC ATTAA ACAC-TACTTTGATATGGCTTTA TTATAATTAATATTA TERM 4864 3631032 - 3631081 + T 83 -9.7 -3.56558 | opp_overlap 3631030 3631032, overlap 3631036 3631080 ATAGTTTTAAAAACA TAAAGCCATATCAAAGTAT AAGCATTAAACA CTACTTTGATATGGCTTTA TTATAATTAATATTA TERM 4865 3631036 - 3631077 + T 72 -6.1 -4.40132 | opp_overlap 3631032 3631030, overlap 3631032 TTTTAAAAACATAAA GCCATATCAAAGTAT AAGCATTAAACA CTACTTTGATATGGC TTTATTATAATTAAT CLH_3368 3631843 - 3631094 - | acyl-ACP thioesterase TERM 4866 3631892 - 3631852 - R 83 -9.5 -3.56325 | TGCCCATAATTATAA TATTACTAAAATAAAAA TCATTTC TTTTTACTTTAGTAATA GTACCCCCTTTCCTT TERM 4867 3632027 - 3632005 - R 79 -5 -5.59564 | opp_overlap 3632010 3632012, overlap 3632012 ATAAATTTAAAAAAA CAAAAAAG ACTATTG CTTTTTTG CAACAGTCTCTTCTT TERM 4868 3632035 - 3632012 - R 100 -7.5 -6.12458 | opp_overlap 3632012 3632010, overlap 3632005 TAAAAAAACAAAAAA GACTATTGC TTTTTT GCAACAGTC TCTTCTTTTAAGTAT CLH_3369 3632232 - 3632050 - | hypothetical protein purA 3633621 - 3632335 - | adenylosuccinate synthetase CLH_3371 3633845 - 3635017 + | NAD-dependent malic enzyme TERM 4869 3635062 - 3635103 + T 70 -4.8 -4.78981 | gap 2, opp_overlap 3635062 3635067, overlap 3635067 AAATATAACCTAAAC CAAAAGCATCGTAATAGTTC TTAT GAA-T-TTACGATGCTTTTA TTTATTTTAATTAAT TERM 4870 3635067 - 3635098 + T 74 -4.7 -5.26247 | gap 2, opp_overlap 3635067 3635062, overlap 3635062 TAACCTAAACCAAAA GCATCGTAATAGTTC TTAT GAA-T-TTACGATGC TTTTATTTATTTTAA TERM 4871 3635377 - 3635408 + T 100 -17.6 -5.10497 | opp_overlap 3635377 CATTTTAATTTAAAA GCACTATGATATTC GACT GAATATCATAGTGC TTTTTTACATAAATT TERM 4872 3635408 - 3635377 - T 100 -17.6 -4.2803 | opp_overlap 3635377 CATTTTAATTTAAAA GCACTATGATATTC GACT GAATATCATAGTGC TTTTTTACATAAATT proC 3636518 - 3635718 - | pyrroline-5-carboxylate reductase CLH_3373 3636733 - 3637086 + | protein phosphatase 2C dnaB 3638448 - 3637108 - | replicative DNA helicase TERM 4873 3638097 - 3638115 + g 70 -3.2 -5.2291 | opp_overlap 3638100, overlap 3638100 ATGTTGAAGCCTTTA TAAGTTTT CTT AAAACTGA TTTTTCTTCTACTAT TERM 4874 3638529 - 3638504 - R 80 -8.4 -4.28432 | opp_overlap 3638504 3638499 3638507 AACTTTAATTTAAAA TAAGCTTCCT AGTTCA AGGAAGCCTA TTTCATTATTCAAAA lonC 3640427 - 3638535 - | ATP-dependent protease, Lon family TERM 4875 3640449 - 3640468 + r 75 -5.8 -4.92783 | TCCCCCTTATTATTG TGGAAGTA TATT TACTTTCA TTTTTGTGCTAACTT rplI 3640886 - 3640443 - | ribosomal protein L9 CLH_3377 3642829 - 3640889 - | DHH family protein CLH_3378 3643174 - 3642854 - | hypothetical protein TERM 4876 3643348 - 3643331 - R 100 -11.3 -5.55769 | opp_overlap 3643330 3643329 CTGTATAATAAAAAA CCCCTGA TTTC TCAGGGG AGTAATTTTATTACT TERM 4877 3643351 - 3643390 + r 76 -8.2 -3.75163 | opp_overlap 3643354, overlap 3643350 3643348 3643349 3643354 GATTTCTCAGGGGAG TAATTTTATTACTATTCA GTTG TGAATGGTAATAAAGCTA TGTTTCTTGCTCTCT TERM 4878 3643354 - 3643387 + r 79 -9.9 -2.65632 | opp_overlap 3643354, overlap 3643350 3643348 3643351 3643349 TTCTCAGGGGAGTAA TTTTATTACTATTCA GTTG TGAATGGTAATAAAG CTATGTTTCTTGCTC rpsR 3643613 - 3643362 - | ribosomal protein S18 CLH_3380 3644078 - 3643635 - | single-strand binding protein rpsF 3644382 - 3644092 - | ribosomal protein S6 CLH_3382 3644680 - 3644489 - | hypothetical protein CLH_3383 3645573 - 3644680 - | mechanosensitive ion channel family protein TERM 4879 3645328 - 3645341 + g 73 -5.3 -4.63542 | overlap 3645339 TAAAACACTCTTCAT CACTT CTCC AAGTG TTTTTGCACGTTGTG CLH_3384 3645840 - 3645601 - | hypothetical protein CLH_3385 3646242 - 3646895 + | LysE type translocator CLH_3386 3646911 - 3648068 + | cysteine desulfurase family protein TERM 4880 3648105 - 3648139 + F 74 -6 -4.64766 | opp_overlap 3648111, overlap 3648107 3648108 3648111 ATGTATAATTGTTTT AACTAATTTCTAAAAA ACA TTTTTAGAAATTAATA TTTTTAAGGTATAAC TERM 4881 3648107 - 3648137 + F 78 -8.6 -3.93817 | opp_overlap 3648111, overlap 3648105 3648108 3648111 GTATAATTGTTTTAA CTAATTTCTAAAAA ACA TTTTTAGAAATTAA TATTTTTAAGGTATA TERM 4882 3648108 - 3648136 + F 90 -12.1 -2.95567 | opp_overlap 3648111, overlap 3648107 3648105 3648111 TATAATTGTTTTAAC TAATTTCTAAAAA ACA TTTTTAGAAATTA ATATTTTTAAGGTAT TERM 4883 3648133 - 3648111 - f 82 -9.4 -3.34192 | opp_overlap 3648108 3648107 3648105 3648111 AATTGTTTTAACTAA TTTCTAAAAA ACA TTTTTAGAAA TTAATATTTTTAAGG TERM 4884 3648111 - 3648133 + F 83 -9.4 -3.60925 | opp_overlap 3648111, overlap 3648108 3648107 3648105 AATTGTTTTAACTAA TTTCTAAAAA ACA TTTTTAGAAA TTAATATTTTTAAGG TERM 4885 3648325 - 3648360 + F 100 -18.6 -4.52857 | opp_overlap 3648325 AATCTCTGAATAAAA CCTCCCTTTAAAGGAA AGAA TTTCTTTAAAGGGAGG TTTTGTATGGAAAAT TERM 4886 3648360 - 3648325 - f 100 -16.4 -4.64334 | opp_overlap 3648325 AATCTCTGAATAAAA CCTCCCTTTAAAGGAA AGAA TTTCTTTAAAGGGAGG TTTTGTATGGAAAAT CLH_3387 3648367 - 3648969 + | putative sporulation protein TERM 4887 3649250 - 3649212 - T 100 -14.3 -5.00884 | opp_overlap 3649206 3649212 ATTTGCTGCAAAAAA TAGCTAACTTAAAATAC AATTA ATATTTTAAGTTAGCTA TTTAAATTTTAGAAA TERM 4888 3649212 - 3649250 + T 100 -13.6 -3.92659 | opp_overlap 3649212, overlap 3649206 ATTTGCTGCAAAAAA TAGCTAACTTAAAATA CAATTAA TATTTTAAGTTAGCTA TTTAAATTTTAGAAA CLH_3388 3649784 - 3649266 - | hypothetical protein TERM 4889 3649807 - 3649822 + r 72 -6.2 -4.4296 | opp_overlap 3649807 ATTCCTTTCACTAAA TGTTTC ACGT GAAACA TTTTACTGTATATTA CLH_3389 3650703 - 3649825 - | stage 0 sporulation protein J TERM 4890 3649961 - 3649975 + g 72 -7.2 -4.04576 | AGTTGATTACGTACA TCCTTA TAA TAAGGA TTTAATTCTCTCAAT CLH_3390 3651481 - 3650717 - | sporulation initiation inhibitor protein soj TERM 4891 3650958 - 3650971 + g 71 -3.9 -5.12617 | CCTTCAATTTCCAAG TCTTT ATTT AAAGA TTTTTTAACTAATTG TERM 4892 3651618 - 3651572 - R 100 -7.8 -5.83226 | gap 1, opp_overlap 3651586 AATGTAATAAAAAAA TAGCATATAAACTTGAAAAAA TAAACT TTTTCTCA-GTTTATATACTA TTAAGAATAAAAACC CLH_3391 3652442 - 3651660 - | protein YyaA TERM 4893 3652039 - 3652053 + g 76 -4.3 -5.31545 | AATCTTAATTTATTA GCAAT GGTAG ATTGC TTTTTTCCTATTCTT gidB 3653392 - 3652673 - | 16S rRNA methyltransferase GidB gidA 3655289 - 3653409 - | tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA TERM 4894 3653491 - 3653504 + g 70 -5.3 -4.58303 | ATACGTGATGCCTGA CCTAT GCTT ATAGG TTTTATACTATTTAA trmE 3656669 - 3655299 - | tRNA modification GTPase TrmE TERM 4895 3656997 - 3656975 - R 100 -12.8 -5.13016 | opp_overlap 3656975 AATTAAAACCAAAAA GGAAAGCCTC ATC AAGGCTTTCC TTTTTAATTCTTTTT TERM 4896 3656975 - 3656997 + r 100 -12.1 -5.10004 | opp_overlap 3656975 AATTAAAACCAAAAA GGAAAGCCT CATCA AGGCTTTCC TTTTTAATTCTTTTT CLH_3395 3657627 - 3657001 - | protein jag CLH_3396 3658454 - 3657675 - | membrane protein OxaA rnpA 3659038 - 3658661 - | ribonuclease P protein component TERM 4897 3659099 - 3659083 - R 87 -7.2 -5.252 | opp_overlap 3659074 3659083 CATTTGCAGAAAAAA GGCCAC TTAAT GCGGCC CTTATGCTGTTAATT rpmH 3659235 - 3659101 - | ribosomal protein L34