TransTermHP v2.07 (built on Jan 21 2009) 25 bins; sample size is 20000000 --pval-conf=/fs/szasmg2/carlk/TTupdate2/expterm.dat --gc=-2.3 --au=-0.9 --gu=1.3 --mm=3.5 --gap=6 --max-len=59 --min-stem=4 --max-loop=13 --min-loop=3 --uwin-length=6 --uwin-require=3 --max-hp-score=-2 --max-tail-score=-2.5 --loop-penalty=1,2,3,4,5,6,7,8,9,10,11 --start-cut=0 --end-cut=25 Genes: 0.706286 %AT, 3146227 nt, 14847 terms. Intergenic: 0.755886 %AT, H2T: 645764 nt, 6191 terms; T2T: 121262 nt, 3095 terms; H2H: 155270 nt, 3407 terms. Each terminator entry starts in column 3 and is of the form: term # start - end +/- regionconf hp tail | notes Followed by the sequence of the 5' tail, 5' stem, loop, 3' stem, and 3' tail. Genes are interspersed, and start the first column. SEQUENCE gi|153937894|ref|NC_009699.1| Clostridium botulinum F str. Langeland, complete genome (length 3995387) dnaA 1 - 1338 + | chromosomal replication initiation protein dnaN 1601 - 2704 + | DNA polymerase III subunit beta CLI_0003 2723 - 2929 + | S4 domain-containing protein TERM 1 2962 - 2932 - f 84 -8.7 -4.27686 | opp_overlap 2925 2932, overlap 2922 TAAAATTATTTAAAA TTATTTAAAATTT TATAT AAATTTTAAATAA TTGTTACTAAAAAAT TERM 2 2932 - 2962 + F 79 -8.7 -3.72027 | opp_overlap 2932 2922, overlap 2925 TAAAATTATTTAAAA TTATTTAAAATTT TATAT AAATTTTAAATAA TTGTTACTAAAAAAT recF 3008 - 4102 + | recombination protein F CLI_0005 4123 - 4386 + | hypothetical protein TERM 3 5543 - 5532 - g 75 -5.8 -4.82333 | ATAATAATTGAAAAA GGCT TGTC AGCC TCAAGAGCTAGAGAA gyrB 4404 - 6317 + | DNA gyrase subunit B gyrA 6343 - 8838 + | DNA gyrase subunit A TERM 4 8836 - 8883 + F 100 -14.6 -4.48987 | opp_overlap 8840 8852, overlap 8840 8843 8852 AACTTAAATGAAGAA TAAATAATAAGAAAAATCAGCA TTAA TGCTGATTTTTCTTATTATGAA TTTTAATTATAAAAA TERM 5 8840 - 8879 + F 100 -19.8 -2.8155 | opp_overlap 8840 8852, overlap 8836 8843 8852 TAAATGAAGAATAAA TAATAAGAAAAATCAGCA TTAA TGCTGATTTTTCTTATTA TGAATTTTAATTATA TERM 6 8879 - 8840 - f 100 -19.8 -4.54404 | opp_overlap 8836 8840 8843 8852, overlap 8852 TAAATGAAGAATAAA TAATAAGAAAAATCAGCA TTAA TGCTGATTTTTCTTATTA TGAATTTTAATTATA TERM 7 8843 - 8876 + F 100 -17.1 -3.53787 | opp_overlap 8840 8852, overlap 8840 8836 8852 ATGAAGAATAAATAA TAAGAAAAATCAGCA TTAA TGCTGATTTTTCTTA TTATGAATTTTAATT TERM 8 8852 - 8867 + F 100 -7.6 -5.34365 | opp_overlap 8852 8840, overlap 8843 8840 8836 AAATAATAAGAAAAA TCAGCA TTAA TGCTGA TTTTTCTTATTATGA TERM 9 8867 - 8852 - f 100 -7.6 -5.40014 | opp_overlap 8843 8840 8836 8852, overlap 8840 AAATAATAAGAAAAA TCAGCA TTAA TGCTGA TTTTTCTTATTATGA CLI_0008 8935 - 9051 + | hypothetical protein TERM 10 9044 - 9028 - f 70 -5.1 -4.84311 | opp_overlap 9032 9033 TTTGATACAATAAAA CTCGTCC TTG AGACAAG GGTTTGAAAGTAACA TERM 11 9102 - 9087 - f 80 -6.2 -5.1361 | ACAAATTTGAAAAAA GTTCTT GACA AAGAAC AACAAATTTGATAAG TERM 12 10742 - 10723 - f 75 -9.2 -2.65808 | opp_overlap 10726 10729, overlap 10720 10735 AGTCGTAACAAGGTA GCCGTAGG AGAA CCTGCGGC TGGATCACCTCCTTT TERM 13 10790 - 10768 - f 72 -7.9 -3.50853 | overlap 10777 CCTTTCTAAGGAGAA TAGAAAGAA GAAAA TTCTTTCTA AAGGCTGAATTCTCT TERM 14 10812 - 10838 + F 79 -8.9 -3.55603 | overlap 10810 GAATTCTCTGTTTAA TTTTGAGAGAC CAAGA GTTTCTCAAAA TGTTCTTTGAAAATT TERM 15 11057 - 11042 - f 72 -9 -2.69489 | opp_overlap 11040 11042 11052, overlap 11039 GAATGAGGAAACTCA CATGGG TAAC CCCATG TATTATGCACTGAAT TERM 16 11042 - 11057 + F 75 -9 -3.23572 | opp_overlap 11042 11039, overlap 11040 11052 GAATGAGGAAACTCA CATGGG TAAC CCCATG TATTATGCACTGAAT TERM 17 11201 - 11184 - f 76 -8.5 -3.695 | opp_overlap 11183 GGGAAAGAGCCCAAA CCAGAAA CTTG TTTCTGG GGTTGTGGATAGATC TERM 18 11367 - 11352 - f 81 -10.4 -2.71011 | ACCTTGTGGGAAGCA GGGAGG ACCA CCTCCC AAGGCTAAATACTAC TERM 19 11441 - 11430 - f 75 -7.2 -4.2354 | GAAAGGTGAAAAGAA CCCC GGAA GGGG AGTGAAATAGAACCT TERM 20 12263 - 12247 - f 71 -6.5 -4.08767 | CTTATTGGCCGAAAA CCTAAGG TTT CCTGAGG AAGGTTCGTCCGCTC TERM 21 14154 - 14138 - f 72 -8.7 -2.62616 | overlap 14153 TCAGTTGGGAGAGCA CCTGCCT TGC AAGCAGG GGGTCAGGAGTTCGA TERM 22 14227 - 14192 - f 75 -7.8 -3.96624 | opp_overlap 14194, overlap 14194 TATCTCCACCATAAA TATAAGATACTTATGA ATTT TCATAGGTATCTTATT TTTTTATATCCATTT TERM 23 14225 - 14194 - f 91 -10.4 -3.57406 | opp_overlap 14194, overlap 14192 TCTCCACCATAAATA TAAGATACTTATGA ATTT TCATAGGTATCTTA TTTTTTTATATCCAT TERM 24 14194 - 14225 + F 100 -12.6 -5.72616 | opp_overlap 14194 14192 TCTCCACCATAAATA TAAGATACTTATGA ATTT TCATAGGTATCTTA TTTTTTTATATCCAT CLI_0019 14382 - 14804 + | hypothetical protein TERM 25 14856 - 14846 - g 81 -2.6 -5.74288 | opp_overlap 14846 AGAAAGAAGAAAAAA TATT GAA AATA TGTTAATGAAAAATA TERM 26 15181 - 15165 - g 85 -8.1 -4.4648 | opp_overlap 15164 ATGTTGATGATAAAA TCTATGT ATG ACATAGA CAATTTTATAAAAAG CLI_0020 14820 - 15341 + | putative transcriptional regulator CLI_0021 15343 - 16506 + | iron-sulfur cluster-binding protein TERM 27 16680 - 16690 + G 72 -2.6 -5.4492 | TTTTAATGATTCCTA TATT TAT AATA TTTTTTATATCTATA TERM 28 16810 - 16822 + G 71 -4.9 -4.79756 | CTTTATTTTTAACTT TATAG TAT CTATA TTTTTAGCTTATATA TERM 29 16906 - 16922 + G 75 -4.5 -5.02777 | overlap 16908 TAATGTGAAAGATCC TATCTTT TTT AAAGATG TTTCTTTTTATATAT CLI_0022 16511 - 19192 + | hypothetical protein TERM 30 19219 - 19257 + F 77 -4.7 -5.29385 | gap 1, opp_overlap 19225 19228, overlap 19225 ACTATGATTAATATC TGTA-AAGAACCCCATGT ATTT ATAAGGGGTTCTTATTCA TTTTTTGATTAAATT TERM 31 19225 - 19250 + F 79 -8.3 -4.0749 | opp_overlap 19225 19228, overlap 19219 ATTAATATCTGTAAA GAACCCCATGT ATTT ATAAGGGGTTC TTATTCATTTTTTGA CLI_0023 19329 - 20105 + | ErfK/YbiS/YcfS/YnhG family protein CLI_0024 20130 - 21527 + | oxidoreductase, FAD dependent CLI_0025 21544 - 21897 + | hypothetical protein TERM 32 22160 - 22190 + F 100 -11.9 -5.94214 | overlap 22156 GGGTGGCAACGCGGA GCTTTTCGTCCCT TTTAT AGGGACGAGGGGC TTTTTTTATTATATT TERM 33 22260 - 22234 - f 72 -8.2 -3.22091 | opp_overlap 22233, overlap 22235 22237 ATCTGAAGGGAGGAA GTATTTATTGGA TAA TCCAATAAATAA AATATTATGTTAGAT TERM 34 22259 - 22235 - f 85 -11.7 -2.52933 | opp_overlap 22233, overlap 22234 22237 TCTGAAGGGAGGAAG TATTTATTGGA TAA TCCAATAAATA AAATATTATGTTAGA TERM 35 22257 - 22237 - f 80 -9.9 -2.8007 | opp_overlap 22233, overlap 22235 22234 TGAAGGGAGGAAGTA TTTATTGGA TAA TCCAATAAA TAAAATATTATGTTA serS-1 22267 - 23547 + | seryl-tRNA synthetase TERM 36 23598 - 23636 + F 70 -3.5 -5.3321 | gap 1, opp_overlap 23580 23598, overlap 23580 TTAATTTAAAATAAA CACTATTAAA-TTAATTA ATTG TGATAAAATTTAATAGTG TTTTTATTATTGGTT TERM 37 23868 - 23852 - f 72 -8.7 -2.52543 | AGTTGGTTTAAGGCA CCGGTCT TGA AAACCGG CGTACGGGTGACCGT TERM 38 24042 - 24068 + F 81 -5.3 -5.40279 | gap 2, opp_overlap 24042 AATATTTTGTACGAA GAAGTCG--AGCT TTT AGCTATCGACTTC TTTTCTTTTGTTTTA CLI_0031 24306 - 25442 + | hypothetical protein TERM 39 25602 - 25586 - T 72 -8.7 -2.52543 | AGTTGGTTTAAGGCA CCGGTCT TGA AAACCGG CGTACGGGTGACCGT TERM 40 25762 - 25785 + T 100 -11.2 -5.30348 | opp_overlap 25762 TCTTTCTCCGCCAAA GCATTTAACT CTAA AGTTAAATGC TTTTTATTATTAAGT TERM 41 25785 - 25762 - T 95 -11.2 -3.53012 | opp_overlap 25762 TCTTTCTCCGCCAAA GCATTTAACT CTAA AGTTAAATGC TTTTTATTATTAAGT TERM 42 25918 - 25965 + T 100 -16 -3.60805 | opp_overlap 25931, overlap 25931 ATCCTGCCCGGTGCA CCATAAATAAAAAGTCTTTCGA TTTA TCGAAAGACTTTTTATTTTTTG TTTCCAATAGGCTCT TERM 43 25931 - 25952 + T 100 -11.7 -5.84011 | opp_overlap 25931, overlap 25918 CACCATAAATAAAAA GTCTTTCGA TTTA TCGAAAGAC TTTTTATTTTTTGTT TERM 44 25952 - 25931 - T 100 -11.7 -5.40464 | opp_overlap 25931 25918 CACCATAAATAAAAA GTCTTTCGA TTTA TCGAAAGAC TTTTTATTTTTTGTT psd 26843 - 25956 - | phosphatidylserine decarboxylase TERM 45 26703 - 26713 + g 72 -2.6 -5.49579 | opp_overlap 26702, overlap 26702 26707 ATAAAATCCATATAT TTTT GAA AAAA TTTTCTTTTTTATAA TERM 46 26707 - 26718 + g 71 -3 -5.28778 | opp_overlap 26702, overlap 26702 26703 AATCCATATATTTTT GAAA AAAT TTTC TTTTTTATAAATACT CLI_0039 28544 - 26946 - | hypothetical protein TERM 47 27790 - 27815 + g 71 -3.3 -5.33785 | opp_overlap 27790 27794 ATTTGTTTTACTATA GATATAGCTAA TTTA TGAGCTACATC TTTTTTATCATAATT TERM 48 28610 - 28592 - R 75 -5.3 -5.03227 | gap 1, opp_overlap 28592 28594 ATAGTATAAATAAAA GCCCTAAC CTTA GTT-GGGC TTATTAATATTATTT CLI_0040 28940 - 28620 - | hypothetical protein TERM 49 29168 - 29152 - H 75 -9.5 -2.71744 | opp_overlap 29159 29160 29164, overlap 29149 29147 29165 CAGTAGGATAGAGCA GCAGTTT CCT AAACTGC GTGTCGCAGGTTCGA TERM 50 29177 - 29165 - H 79 -9.1 -3.54741 | opp_overlap 29164 29160 29159, overlap 29152 29149 29147 CAGCAGTTTCCTAAA CTGCG TGT CGCAG GTTCGATTCCTGTCG TERM 51 29206 - 29229 + H 100 -6.9 -6.04324 | opp_overlap 29206 CGGGCGTACCAAAAA TCTTATAAC TTAATT GTTATAAGA TTTTTTATTTTTTGC TERM 52 29229 - 29206 - H 77 -6.9 -4.72272 | opp_overlap 29206 CGGGCGTACCAAAAA TCTTATAAC TTAATT GTTATAAGA TTTTTTATTTTTTGC CLI_0042 29334 - 30884 + | putative sensory box sigma-54 dependent transcriptional regulator TERM 53 31144 - 31112 - g 83 -10 -3.61946 | overlap 31110 CATTGGAGATAAACA GTTTGGTTCATTGG CAACT CCAATATACCAAAC ATCTACATTTATATT TERM 54 31974 - 31961 - g 70 -5.3 -4.57569 | TGAGCTTGCTAAAAA GCAAA TGAG TTTGC CTGGTGCTATGATTT megL 31044 - 32246 + | methionine gamma-lyase TERM 55 32263 - 32300 + F 86 -8.7 -4.42386 | opp_overlap 32262 32268, overlap 32251 32264 32268 TATTTTATAAAAAAT ATAAATGTTGATTCTTT ATGC AAGGAATCAACATTTGC TTTTATAAATAAAAA TERM 56 32264 - 32299 + F 93 -12.2 -3.2511 | opp_overlap 32262 32268, overlap 32251 32263 32268 ATTTTATAAAAAATA TAAATGTTGATTCTTT ATGC AAGGAATCAACATTTG CTTTTATAAATAAAA TERM 57 32268 - 32295 + F 95 -10.8 -4.27483 | opp_overlap 32268 32262, overlap 32264 32263 TATAAAAAATATAAA TGTTGATTCTTT ATGC AAGGAATCAACA TTTGCTTTTATAAAT TERM 58 32295 - 32268 - f 85 -8.6 -4.68607 | opp_overlap 32264 32263 32268, overlap 32262 TATAAAAAATATAAA TGTTGATTCTTT ATGC AAGGAATCAACA TTTGCTTTTATAAAT CLI_0044 32370 - 32807 + | cytidine/deoxycytidylate deaminase family protein TERM 59 33357 - 33374 + F 73 -3.4 -5.49579 | opp_overlap 33357, overlap 33365 AACAAGAATTTTAAA GGTACT ATTAAA GGTACC TTTTATTTTTTATAA TERM 60 33365 - 33379 + F 72 -3.6 -5.31275 | opp_overlap 33357, overlap 33357 TTTTAAAGGTACTAT TAAAGG TAC CTTTTA TTTTTTATAATAAAA dnaX 33452 - 35077 + | DNA polymerase III subunits gamma and tau CLI_0048 35142 - 35483 + | hypothetical protein recR 35516 - 36112 + | recombination protein RecR CLI_0050 36169 - 36432 + | hypothetical protein TERM 61 36479 - 36446 - f 90 -11.3 -3.15638 | opp_overlap 36446, overlap 36450 AAAATTTATATTTAA TAAACCATTAGAAAT ATAA AATTCTAATGGTTTA TTTTTTATTATTTTT TERM 62 36446 - 36479 + F 100 -11.3 -5.80727 | opp_overlap 36446 36450 AAAATTTATATTTAA TAAACCATTAGAAAT ATAA AATTCTAATGGTTTA TTTTTTATTATTTTT TERM 63 36475 - 36450 - f 78 -7.7 -4.23213 | opp_overlap 36446, overlap 36446 TTTATATTTAATAAA CCATTAGAAAT ATAA AATTCTAATGG TTTATTTTTTATTAT bofA 36582 - 36842 + | sigma-K factor processing regulatory protein BofA TERM 64 37550 - 37529 - g 95 -10.3 -4.08221 | TTTAATACAATTAAA TGGTGTAAA AAAA TTTACACCA AACCATAAAATGGAT sfsA 36993 - 37685 + | sugar fermentation stimulation protein A CLI_0053 37741 - 38229 + | NUDIX family hydrolase CLI_0054 38347 - 39069 + | hypothetical protein TERM 65 39061 - 39107 + F 83 -7.5 -4.62102 | gap 1, opp_overlap 39057 39064 39071, overlap 39071 39099 AGAGAAGAAAATGAA CAATCCT-AAAGGAGCTTAAGT TTAA ACTTAAGCTCCTTTTAAGAAAG TTTTAATATTTTTGT TERM 66 39104 - 39064 - f 100 -14.4 -4.0219 | gap 1, opp_overlap 39061 39071 39099, overlap 39057 39071 GAAGAAAATGAACAA TCCT-AAAGGAGCTTAAGT TTAA ACTTAAGCTCCTTTTAAGA AAGTTTTAATATTTT TERM 67 39096 - 39071 - f 100 -14.9 -3.72453 | opp_overlap 39061 39071, overlap 39064 39057 ATGAACAATCCTAAA GGAGCTTAAGT TTAA ACTTAAGCTCC TTTTAAGAAAGTTTT TERM 68 39071 - 39096 + F 100 -14.9 -4.10855 | opp_overlap 39071 39064 39057, overlap 39061 ATGAACAATCCTAAA GGAGCTTAAGT TTAA ACTTAAGCTCC TTTTAAGAAAGTTTT CLI_0055 39203 - 39991 + | iron-sulfur cluster-binding protein CLI_0056 40010 - 40171 + | hypothetical protein TERM 69 40435 - 40475 + F 74 -5 -5.1286 | gap 1 TGTTTATGATTTAAA CCTCTATTCTTA-ATTTGA GCGG TTATATATAAGAATAGGGG TTTTTATAATTTTTG CLI_0057 40554 - 41258 + | ThiF domain-containing protein CLI_0058 41341 - 42450 + | major facilitator superfamily protein CLI_0059 42479 - 43423 + | acetyltransferase TERM 70 43659 - 43644 - T 80 -6.2 -5.1361 | ACAAATTTGAAAAAA GTTCTT GACA AAGAAC AACAAATTTGATAAG TERM 71 45299 - 45280 - T 75 -9.2 -2.65808 | opp_overlap 45283 45286, overlap 45277 45292 AGTCGTAACAAGGTA GCCGTAGG AGAA CCTGCGGC TGGATCACCTCCTTT TERM 72 45347 - 45325 - T 72 -7.9 -3.50853 | overlap 45334 CCTTTCTAAGGAGAA TAGAAAGAA GAAAA TTCTTTCTA AAGGCTGAATTCTCT TERM 73 45663 - 45678 + T 75 -9 -3.23572 | opp_overlap 45663 45660, overlap 45661 45673 GAATGAGGAAACTCA CATGGG TAAC CCCATG TATTATGCACTGAAT TERM 74 45678 - 45663 - T 72 -9 -2.69489 | opp_overlap 45661 45663 45673, overlap 45660 GAATGAGGAAACTCA CATGGG TAAC CCCATG TATTATGCACTGAAT TERM 75 45822 - 45805 - T 76 -8.5 -3.695 | opp_overlap 45804 GGGAAAGAGCCCAAA CCAGAAA CTTG TTTCTGG GGTTGTGGATAGATC TERM 76 45988 - 45973 - T 81 -10.4 -2.71011 | ACCTTGTGGGAAGCA GGGAGG ACCA CCTCCC AAGGCTAAATACTAC TERM 77 46062 - 46051 - T 75 -7.2 -4.2354 | GAAAGGTGAAAAGAA CCCC GGAA GGGG AGTGAAATAGAACCT TERM 78 46884 - 46868 - T 71 -6.5 -4.08767 | CTTATTGGCCGAAAA CCTAAGG TTT CCTGAGG AAGGTTCGTCCGCTC TERM 79 48687 - 48710 + T 100 -12.6 -5.63236 | opp_overlap 48687 CGGTGGATCACCAAA GCACTTTACA AAAT TGTAAAGTGC TTTTTATTTTTGAAT TERM 80 48710 - 48687 - T 95 -12.6 -3.78775 | opp_overlap 48687 CGGTGGATCACCAAA GCACTTTACA AAAT TGTAAAGTGC TTTTTATTTTTGAAT TERM 81 48868 - 48833 - T 100 -8.7 -5.02606 | opp_overlap 48839, overlap 48839 CATGAAATAATAAAA TAAAAATCTATATTA GTCTCA TAATATAGATTTTCA TGAATACAAGGGCCT TERM 82 48862 - 48839 - T 86 -5.5 -5.64321 | opp_overlap 48839, overlap 48833 ATAATAAAATAAAAA TCTATATTA GTCTCA TAATATAGA TTTTCATGAATACAA CLI_0067 49485 - 48889 - | uracil-DNA glycosylase family protein TERM 83 49817 - 49807 - H 71 -5.4 -4.63172 | opp_overlap 49807 CAGGAAACCATAAAA GCAA TTA TTGC TTAAATAATAAATAA TERM 84 50177 - 50162 - H 85 -6.2 -5.49809 | CAAATTTGAAAAAAA GTTCTT GACA AAGAAC AACAAATTTGATAAG TERM 85 51817 - 51798 - H 75 -9.2 -2.65808 | opp_overlap 51801 51804, overlap 51795 51810 AGTCGTAACAAGGTA GCCGTAGG AGAA CCTGCGGC TGGATCACCTCCTTT TERM 86 51865 - 51843 - H 72 -7.9 -3.50853 | overlap 51852 CCTTTCTAAGGAGAA TAGAAAGAA GAAAA TTCTTTCTA AAGGCTGAATTCTCT TERM 87 52117 - 52132 + H 75 -9 -3.23572 | opp_overlap 52114 52117, overlap 52115 52127 GAATGAGGAAACTCA CATGGG TAAC CCCATG TATTATGCACTGAAT TERM 88 52132 - 52117 - H 72 -9 -2.69489 | opp_overlap 52117 52115 52127, overlap 52114 GAATGAGGAAACTCA CATGGG TAAC CCCATG TATTATGCACTGAAT TERM 89 52276 - 52259 - H 76 -8.5 -3.695 | opp_overlap 52258 GGGAAAGAGCCCAAA CCAGAAA CTTG TTTCTGG GGTTGTGGATAGATC TERM 90 52442 - 52427 - H 81 -10.4 -2.71011 | ACCTTGTGGGAAGCA GGGAGG ACCA CCTCCC AAGGCTAAATACTAC TERM 91 52516 - 52505 - H 75 -7.2 -4.2354 | GAAAGGTGAAAAGAA CCCC GGAA GGGG AGTGAAATAGAACCT TERM 92 53338 - 53322 - H 71 -6.5 -4.08767 | CTTATTGGCCGAAAA CCTAAGG TTT CCTGAGG AAGGTTCGTCCGCTC TERM 93 55164 - 55141 - H 95 -12.6 -3.78775 | opp_overlap 55141 CGGTGGATCACCAAA GCACTTTACA AAAT TGTAAAGTGC TTTTTATTTTTGAAT TERM 94 55141 - 55164 + H 100 -12.6 -5.63236 | opp_overlap 55141 CGGTGGATCACCAAA GCACTTTACA AAAT TGTAAAGTGC TTTTTATTTTTGAAT TERM 95 55345 - 55370 + H 70 -7.9 -3.37755 | opp_overlap 55344, overlap 55343 TTAAGATTAATGGAG TTTATAAAAAT AGTT ATTTTTATAAA TATTTAAGGCTATCT TERM 96 55529 - 55542 + G 72 -5.3 -4.77165 | opp_overlap 55529 CTAAAGTATAAAAAT TCCAA GGCA TTGGA TTTTATTGTAGAGGA CLI_0075 55481 - 56044 + | RNA polymerase factor sigma-70 CLI_0076 56041 - 57483 + | hypothetical protein TERM 97 57494 - 57527 + F 70 -2.5 -5.49729 | opp_overlap 57494 AATAAATAGAAGAAA TAAATCCCTATAATA TTAA TAAATTAGGGATTTA TTTTTTTAGCTACTT TERM 98 57977 - 57962 - f 76 -6.2 -4.7339 | AACAAATTTGAAAAA GTTCTT GACA AAGAAC AACAAATTTGATAAG TERM 99 59617 - 59598 - f 75 -9.2 -2.65808 | opp_overlap 59601 59604, overlap 59595 59610 AGTCGTAACAAGGTA GCCGTAGG AGAA CCTGCGGC TGGATCACCTCCTTT TERM 100 59736 - 59715 - f 70 -7.4 -3.66908 | opp_overlap 59716 TTCTCTCAAAATGAA GCTAAACA TTAGTT TGTTTAGC TAAGTGATTGTACCA TERM 101 59996 - 59981 - f 72 -9 -2.69489 | opp_overlap 59981 59983 59991, overlap 59978 GAATGAGGAAACTCA CATGGG TAAC CCCATG TATCATGCACTGAAT TERM 102 59981 - 59996 + F 73 -9 -2.79915 | opp_overlap 59981 59978, overlap 59983 59991 GAATGAGGAAACTCA CATGGG TAAC CCCATG TATCATGCACTGAAT TERM 103 60140 - 60123 - f 76 -8.5 -3.695 | GGGAAAGAGCCCAAA CCAGAAA CTTG TTTCTGG GGTTGCGGATAGATC TERM 104 60306 - 60291 - f 81 -10.4 -2.71011 | ACCTTGTGGGAAGCA GGGAGG ACCA CCTCCC AAGGCTAAATACTAC TERM 105 60380 - 60369 - f 75 -7.2 -4.2354 | GAAAGGTGAAAAGAA CCCC GGAA GGGG AGTGAAATAGAACCT TERM 106 61202 - 61186 - f 71 -6.5 -4.08767 | CTTATTGGCCGAAAA CCTAAGG TTT CCTGAGG AAGGTTCGTCCGCTC TERM 107 63026 - 63011 - f 86 -7.6 -4.77438 | opp_overlap 63011 AGCCACCAGGAAAAA CTAGCA GTAA TGCTAG TTTTTTTGCGTTTCA TERM 108 63011 - 63026 + F 100 -7.6 -5.58209 | opp_overlap 63011 AGCCACCAGGAAAAA CTAGCA GTAA TGCTAG TTTTTTTGCGTTTCA CLI_0085 63218 - 63403 + | hypothetical protein CLI_0086 63658 - 63831 + | hypothetical protein TERM 109 64982 - 64967 - f 80 -6.2 -5.1361 | ACAAATTTGAAAAAA GTTCTT GACA AAGAAC GACAAATTTGATAAG TERM 110 66622 - 66603 - f 75 -9.2 -2.65808 | opp_overlap 66606 66609, overlap 66600 66615 AGTCGTAACAAGGTA GCCGTAGG AGAA CCTGCGGC TGGATCACCTCCTTT TERM 111 66670 - 66648 - f 72 -7.9 -3.50853 | overlap 66657 CCTTTCTAAGGAGAA TAGAAAGAA GAAAA TTCTTTCTA AAGGCTGAATTCTCT TERM 112 66692 - 66718 + F 79 -8.9 -3.55603 | overlap 66690 GAATTCTCTGTTTAA TTTTGAGAGAC CAAGA GTTTCTCAAAA TGTTCTTTGAAAATT TERM 113 66922 - 66937 + F 75 -9 -3.23572 | opp_overlap 66919 66922, overlap 66920 66932 GAATGAGGAAACTCA CATGGG TAAC CCCATG TATTATGCACTGAAT TERM 114 66937 - 66922 - f 72 -9 -2.69489 | opp_overlap 66922 66920 66932, overlap 66919 GAATGAGGAAACTCA CATGGG TAAC CCCATG TATTATGCACTGAAT TERM 115 67081 - 67064 - f 76 -8.5 -3.695 | opp_overlap 67063 GGGAAAGAGCCCAAA CCAGAAA CTTG TTTCTGG GGTTGTGGATAGATC TERM 116 67247 - 67232 - f 81 -10.4 -2.71011 | ACCTTGTGGGAAGCA GGGAGG ACCA CCTCCC AAGGCTAAATACTAC TERM 117 67321 - 67310 - f 75 -7.2 -4.2354 | GAAAGGTGAAAAGAA CCCC GGAA GGGG AGTGAAATAGAACCT TERM 118 68143 - 68127 - f 71 -6.5 -4.08767 | CTTATTGGCCGAAAA CCTAAGG TTT CCTGAGG AAGGTTCGTCCGCTC TERM 119 69948 - 69973 + F 100 -9.1 -5.31877 | opp_overlap 69948 CGAGCCACCAAAAAA GCATCTAAGAT ATTT ATCTTGGGTGC TTTTTTATAGTAAGT TERM 120 69973 - 69948 - f 74 -4.7 -5.1675 | opp_overlap 69948 CGAGCCACCAAAAAA GCATCTAAGAT ATTT ATCTTGGGTGC TTTTTTATAGTAAGT CLI_0097 70083 - 70826 + | peptidil-prolyl isomerase family protein TERM 121 70873 - 70824 - f 95 -9.7 -4.89521 | opp_overlap 70824 70839 70866, overlap 70827 70829 70839 ACAGTTGAAATAAAA TAATATAATAAAAAAGATAGCAA ATGT TTGCTATCTTTTTTATTTAATGA GTATGTATATTTATT TERM 122 70824 - 70873 + F 75 -9.7 -2.50346 | opp_overlap 70824 70827 70829 70839, overlap 70839 70866 ACAGTTGAAATAAAA TAATATAATAAAAAAGATAGCAA ATGT TTGCTATCTTTTTTATTTAATGA GTATGTATATTTATT TERM 123 70869 - 70827 - f 100 -13.3 -4.54026 | gap 1, opp_overlap 70824 70839 70866, overlap 70824 70829 70839 GTTGAAATAAAATAA TATAATAAAAAAGATAGCAA ATGT TTGCTATCTTTTTTATT-TA ATGAGTATGTATATT TERM 124 70868 - 70829 - f 100 -14 -3.86571 | opp_overlap 70824 70839 70866, overlap 70827 70824 70839 TGAAATAAAATAATA TAATAAAAAAGATAGCAA ATGT TTGCTATCTTTTTTATTT AATGAGTATGTATAT TERM 125 70839 - 70858 + F 100 -9.4 -5.68438 | opp_overlap 70829 70827 70824 70839, overlap 70824 TAATATAATAAAAAA GATAGCAA ATGT TTGCTATC TTTTTTATTTAATGA TERM 126 70858 - 70839 - f 100 -9.4 -5.64304 | opp_overlap 70839 70824, overlap 70829 70827 70824 TAATATAATAAAAAA GATAGCAA ATGT TTGCTATC TTTTTTATTTAATGA TERM 127 72836 - 72817 - f 75 -9.2 -2.65808 | opp_overlap 72820 72823, overlap 72814 72829 AGTCGTAACAAGGTA GCCGTAGG AGAA CCTGCGGC TGGATCACCTCCTTT TERM 128 72884 - 72862 - f 72 -7.9 -3.50853 | overlap 72871 CCTTTCTAAGGAGAA TAGAAAGAA GAAAA TTCTTTCTA AAGGCTGAATTCTCT TERM 129 72906 - 72932 + F 79 -8.9 -3.55603 | overlap 72904 GAATTCTCTGTTTAA TTTTGAGAGAC CAAGA GTTTCTCAAAA TGTTCTTTGAAAATT TERM 130 73136 - 73151 + F 75 -9 -3.23572 | opp_overlap 73133 73136, overlap 73134 73146 GAATGAGGAAACTCA CATGGG TAAC CCCATG TATTATGCACTGAAT TERM 131 73151 - 73136 - f 72 -9 -2.69489 | opp_overlap 73136 73134 73146, overlap 73133 GAATGAGGAAACTCA CATGGG TAAC CCCATG TATTATGCACTGAAT TERM 132 73295 - 73278 - f 76 -8.5 -3.695 | opp_overlap 73277 GGGAAAGAGCCCAAA CCAGAAA CTTG TTTCTGG GGTTGTGGATAGATC TERM 133 73461 - 73446 - f 81 -10.4 -2.71011 | ACCTTGTGGGAAGCA GGGAGG ACCA CCTCCC AAGGCTAAATACTAC TERM 134 73535 - 73524 - f 75 -7.2 -4.2354 | GAAAGGTGAAAAGAA CCCC GGAA GGGG AGTGAAATAGAACCT TERM 135 74357 - 74341 - f 71 -6.5 -4.08767 | CTTATTGGCCGAAAA CCTAAGG TTT CCTGAGG AAGGTTCGTCCGCTC TERM 136 76085 - 76110 + F 100 -12.1 -5.252 | opp_overlap 76088 76091 76095 AGATGATTATTAGGA TAAGAACTCAT TTAA ATGAGTTCTTA TTTTTTGTAAAAATA TERM 137 76107 - 76088 - f 82 -9.4 -3.45023 | opp_overlap 76085, overlap 76091 76095 TGATTATTAGGATAA GAACTCAT TTAA ATGAGTTC TTATTTTTTGTAAAA CLI_0103 76430 - 77173 + | NAD-dependent deacetylase TERM 138 77189 - 77170 - T 83 -3.6 -5.96521 | opp_overlap 77170 AGTAATTAAAAAAAA CTAATCAA ATTT TTGGTTAG TTTTTTAATTTTAAT TERM 139 77170 - 77189 + T 82 -5.8 -5.48054 | opp_overlap 77170 AGTAATTAAAAAAAA CTAATCAA ATTT TTGGTTAG TTTTTTAATTTTAAT TERM 140 77324 - 77334 + T 71 -6.8 -4.15565 | opp_overlap 77331, overlap 77331 AAATCTGGGTGGCGC CTCC AAA GGAG TTTTAGGATACTAAA TERM 141 77354 - 77331 - T 95 -12.6 -3.53012 | opp_overlap 77324 77331 GGTGGCGCCTCCAAA GGAGTTTTAG GATA CTAAAACTCC TTTTTTAATAATTTA TERM 142 77331 - 77354 + T 100 -12.6 -5.243 | opp_overlap 77331, overlap 77324 GGTGGCGCCTCCAAA GGAGTTTTAG GATA CTAAAACTCC TTTTTTAATAATTTA CLI_0105 78267 - 77359 - | LD-carboxypeptidase family protein TERM 143 78218 - 78243 + g 100 -9.1 -4.47786 | opp_overlap 78225 TCAATAGGACTTGCA GGAGAAACTAT TCCT ATAGTATCTCC TTTGTTTAAATGCTT CLI_0106 79244 - 78303 - | CorA family protein TERM 144 78746 - 78765 + g 70 -3.6 -5.05601 | overlap 78741 78747 GAATAAGTTCTCTAT TCTTCATA GATT TATGAAGC TTTTTCTCTATCATC TERM 145 79404 - 79392 - H 82 -2.7 -6.20267 | opp_overlap 79388 TTAAAAATAAAAAAA CAAAC ATT GTTTA ATTTTTAACTATAAC CLI_0107 79609 - 80112 + | hypothetical protein TERM 146 80089 - 80124 + T 93 -9.2 -4.64334 | opp_overlap 80085 80094 80097, overlap 80094 80097 AAAATAAAATACTTA TCAAATAAGAGACTAG CTAG CTAGTCTCTTATTCTA TTTTATTAAAAAATT TERM 147 80119 - 80094 - T 100 -13.5 -3.81154 | opp_overlap 80094 80089 80097, overlap 80085 80097 AAAATACTTATCAAA TAAGAGACTAG CTAG CTAGTCTCTTA TTCTATTTTATTAAA TERM 148 80094 - 80119 + T 100 -13.5 -4.0865 | opp_overlap 80085 80094 80097, overlap 80089 80097 AAAATACTTATCAAA TAAGAGACTAG CTAG CTAGTCTCTTA TTCTATTTTATTAAA TERM 149 80116 - 80097 - T 95 -10.8 -4.01902 | opp_overlap 80094 80089 80097, overlap 80094 ATACTTATCAAATAA GAGACTAG CTAG CTAGTCTC TTATTCTATTTTATT TERM 150 80097 - 80116 + T 95 -10.8 -4.13421 | opp_overlap 80097 80094, overlap 80094 80089 ATACTTATCAAATAA GAGACTAG CTAG CTAGTCTC TTATTCTATTTTATT CLI_0108 81277 - 80117 - | amidohydrolase-like protein TERM 151 80218 - 80196 - G 72 -7.8 -3.68619 | opp_overlap 80202 TCTAATGCAGTTAAA CTTAAGGCTT GAG AAGCTTTAAG GGCATTTTGTTGAGC TERM 152 80744 - 80723 - G 71 -8.9 -2.77007 | opp_overlap 80723, overlap 80720 AAGACCATTTAATGA TGAAAATAC ATTA GTATTTTCA TAGCTTAAGGTTTCC TERM 153 80723 - 80744 + g 70 -8.9 -2.56046 | opp_overlap 80723 80720 AAGACCATTTAATGA TGAAAATAC ATTA GTATTTTCA TAGCTTAAGGTTTCC CLI_0109 81532 - 81744 + | csfB protein,-like protein TERM 154 81928 - 81947 + G 76 -6.4 -4.58466 | opp_overlap 81927 GAATAATAAAAGAGT CCGGCT ATCTTTTA AGCCGG TTTTATAATTCTAAG TERM 155 82929 - 82902 - g 88 -8.8 -4.48483 | opp_overlap 82907 TATAATAAAGACAAA TATAATTATAAT ATAA ATTATAATTATA TAGAAACTAATATGA CLI_0110 81723 - 83171 + | Orn/Lys/Arg decarboxylase CLI_0111 83195 - 83890 + | putative thymidylate kinase TERM 156 83928 - 83918 - f 70 -2.6 -5.61596 | ACTTGTATAAAAAAA TATA AAA TATA GGTAAGAAACTACAA CLI_0112 83971 - 84300 + | hypothetical protein TERM 157 84544 - 84531 - g 81 -3.9 -5.5112 | opp_overlap 84531 CCTATTAATAAAAAA TCTAT AGGT ATAGA TGATATAAGAAACTT CLI_0113 84318 - 85262 + | DNA polymerase III subunit delta' TERM 158 85963 - 85946 - g 72 -6.3 -4.29325 | GATCAATAGTTAAAA CTCCTTA TGGA CAAGGAG AAGTAGTAGATAATA CLI_0114 85264 - 86178 + | PSP1 domain-containing protein CLI_0115 86190 - 86393 + | hypothetical protein CLI_0116 86475 - 86645 + | ferredoxin, 4Fe-4S TERM 159 86654 - 86683 + F 100 -14.5 -4.22858 | opp_overlap 86660 86662, overlap 86660 AGACTAATTTATTGT TAAAAAGGCCGTC AAAA GACGGTCTTTTTA TTCTTTATATGTTAT TERM 160 86660 - 86677 + F 100 -9.1 -5.42164 | opp_overlap 86660 86662, overlap 86654 ATTTATTGTTAAAAA GGCCGTC AAAA GACGGTC TTTTTATTCTTTATA TERM 161 86677 - 86660 - f 77 -6.9 -4.60041 | opp_overlap 86660 86654, overlap 86662 ATTTATTGTTAAAAA GGCCGTC AAAA GACGGTC TTTTTATTCTTTATA TERM 162 86753 - 86743 - f 70 -2.6 -5.62045 | ACACAGAATAAAAAA TTAT TAT ATAA AAGGTGAATTATATG CLI_0117 86766 - 87506 + | hypothetical protein CLI_0118 87526 - 88380 + | tetrapyrrole methylase family protein TERM 163 88416 - 88385 - f 95 -10.6 -4.2028 | opp_overlap 88378 88395, overlap 88378 TAGATATATAAATAA TTTATTATATTTTT TAAT AAAAATATAATAAA TAACAAATTAAATTA TERM 164 89137 - 89124 - g 70 -3.7 -5.08483 | overlap 89127 GAAAATGAAAGAAAA GCAGC TGAA GCAGC ACAAAAACAAGCTGC CLI_0119 88536 - 89639 + | NlpC/P60 family protein TERM 165 89663 - 89696 + T 93 -12.7 -3.076 | opp_overlap 89663 89668, overlap 89668 TTTTATATAAAACAA CAAAAGTGGAAACTA AAAT TAGTTTCCACTTTTA GTTTATATAATTAAA TERM 166 89696 - 89663 - T 100 -14.9 -4.38141 | opp_overlap 89663 89668, overlap 89668 TTTTATATAAAACAA CAAAAGTGGAAACTA AAAT TAGTTTCCACTTTTA GTTTATATAATTAAA TERM 167 89691 - 89668 - T 100 -12.6 -5.12916 | opp_overlap 89663 89668, overlap 89663 TATAAAACAACAAAA GTGGAAACTA AAAT TAGTTTCCAC TTTTAGTTTATATAA TERM 168 89668 - 89691 + T 100 -12.6 -4.65153 | opp_overlap 89668 89663, overlap 89663 TATAAAACAACAAAA GTGGAAACTA AAAT TAGTTTCCAC TTTTAGTTTATATAA TERM 169 89731 - 89717 - T 88 -4.9 -5.98781 | opp_overlap 89717 TATAATTAAAAAAAA GCCCC TAGAT GAGGC TTTTAAATTATTTAT CLI_0120 89984 - 89739 - | AbrB family transcriptional regulator TERM 170 90332 - 90310 - H 70 -4.3 -4.92783 | overlap 90301 90311 AATTTATTATAAAAA GTAATTTTA TAAAT TAAAACTAC AATACAATATAATAA CLI_0121 90790 - 91401 + | hypothetical protein TERM 171 91422 - 91476 + F 100 -20 -4.84359 | opp_overlap 91426, overlap 91426 91474 TTTTGTGTATTTTTA TAGATCACTTAAAAAGTTATTATTAA TCC TTAATAATGGCTTTTTAAGTGATTTA TTTTTGTAAAAGTAA TERM 172 91472 - 91426 - f 100 -14.2 -2.88544 | opp_overlap 91426 91422 GTGTATTTTTATAGA TCACTTAAAAAGTTATTATTAA TCC TTAATAATGGCTTTTTAAGTGA TTTATTTTTGTAAAA TERM 173 91426 - 91472 + F 100 -18.6 -4.96501 | opp_overlap 91426, overlap 91422 GTGTATTTTTATAGA TCACTTAAAAAGTTATTATTAA TCC TTAATAATGGCTTTTTAAGTGA TTTATTTTTGTAAAA arcA-1 91823 - 93034 + | arginine deiminase TERM 174 93047 - 93084 + T 81 -7.3 -4.77157 | gap 1, opp_overlap 93049 93052, overlap 93049 TAAAATATAAATTCA AATAAGAGTTCACTTATA AAT TA-AGGTGAACTCTTATA TTTTTAGTAAATTAA TERM 175 93049 - 93082 + T 93 -9.9 -3.9993 | gap 1, opp_overlap 93049 93052, overlap 93047 AAATATAAATTCAAA TAAGAGTTCACTTATA AAT TA-AGGTGAACTCTTA TATTTTTAGTAAATT TERM 176 93082 - 93049 - T 86 -9.2 -3.93913 | gap 1, opp_overlap 93049 93047, overlap 93052 AAATATAAATTCAAA TAAGAGTTCAC-TTA TAAAT TAAGGTGAACTCTTA TATTTTTAGTAAATT TERM 177 93079 - 93052 - T 71 -6.5 -4.06633 | gap 1, opp_overlap 93049 93047, overlap 93049 TATAAATTCAAATAA GAGTTCAC-TTA TAAAT TAAGGTGAACTC TTATATTTTTAGTAA ispF 93587 - 93120 - | 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase TERM 178 93661 - 93645 - R 100 -10.9 -5.79526 | ATACTTTAAAAAAAA GTGCAAC AAA GTTGCAC CTTAAGATATATTTT CLI_0124 93995 - 93663 - | hypothetical protein TERM 179 93753 - 93741 - G 76 -3.5 -5.44119 | opp_overlap 93748, overlap 93748 TTTATTGTAAAAAAA TAAAA GCT TTTTA CGTAAAAAATTATGC CLI_0125 94323 - 95192 + | polysaccharide deacetylase family protein TERM 180 95277 - 95321 + T 74 -6 -4.57205 | gap 2 ATTTTAAATGCATAA GGCTATGAAA-T-AGGGCATAT TAT ATGAGCCTTTAATTTCATAGCC TTTATTTGCATTTTT TERM 181 95446 - 95407 - T 78 -9.6 -2.95751 | opp_overlap 95407, overlap 95404 95409 95412 TTATTAATAGAATGA TATAACAGTTTATATTAC CTGG GAAATATAAGCTGTTATA TTTTTTATAAATATT TERM 182 95407 - 95446 + T 100 -11.8 -5.30686 | opp_overlap 95407 95404 95409 95412 TTATTAATAGAATGA TATAACAGTTTATATTAC CTGG GAAATATAAGCTGTTATA TTTTTTATAAATATT CLI_0126 95703 - 95461 - | hypothetical protein TERM 183 95786 - 95798 + H 73 -3.5 -5.61881 | opp_overlap 95777 95786, overlap 95777 AACAAATATATCATA TATAT TAA ATATA TTTTTGTTTTTAAAA TERM 184 96337 - 96366 + G 73 -3.7 -5.26918 | gap 1, overlap 96342 TACCAGCTATAATAG TTACATCCACAGCA GCC TTTTGTGGA-GTAA TTTTTTGTAAAATAT spmA 95823 - 96398 + | spore maturation protein A CLI_0128 96411 - 96929 + | spore maturation protein B CLI_0129 98511 - 97174 - | MATE efflux family protein TERM 185 97813 - 97833 + g 72 -4.2 -5.14698 | GTATTTGAAACGACT TATATTAA TGTTC TTAATATA TTTTATTTTAGGTTT udgA 98655 - 99227 + | uracil-DNA glycosylase CLI_0131 99256 - 99690 + | MarR family transcriptional regulator TERM 186 100005 - 100037 + F 100 -15.9 -5.5208 | opp_overlap 100003 100019 ACAGCGAAATTTACG CCTCTATATAAAACT AAA GGTTTTATATAGAGG TTTTTTATATTATAA TERM 187 101676 - 101664 - g 72 -4.9 -4.88295 | overlap 101656 AAACAAAGCTAAAAA TATAG CAC CTATA AAAGAAGAAATAACT metG 100072 - 102009 + | methionyl-tRNA synthetase TERM 188 102040 - 102076 + F 100 -12.5 -4.75372 | opp_overlap 102040, overlap 102044 ATATCAAATTAAGAA CTAAGCTGTTGACAAAT AAA GTTTGTTAACAGCTTTG TTTTTGGTACATAAT TERM 189 102076 - 102040 - f 86 -9.6 -3.92143 | opp_overlap 102040 102044 ATATCAAATTAAGAA CTAAGCTGTTGACAAA TAAAG TTTGTTAACAGCTTTG TTTTTGGTACATAAT TERM 190 102044 - 102072 + F 100 -11.9 -4.91852 | opp_overlap 102040, overlap 102040 CAAATTAAGAACTAA GCTGTTGACAAAT AAA GTTTGTTAACAGC TTTGTTTTTGGTACA TERM 191 102201 - 102149 - f 75 -7.8 -4.01184 | gap 1, opp_overlap 102150 102151 102153 102161, overlap 102151 102154 ATATATTATCATAAA CAGAGTTCTTGGCTTCAGGGGGAGT TTTT ACTCCCACTAAAGCTTAGAAATC-G TTATCCAGGGACATA TERM 192 102200 - 102151 - f 95 -11.5 -3.59266 | opp_overlap 102150 102151 102153 102161, overlap 102149 102154 ATATTATCATAAACA GAGTTCTTGGCTTCAGGGGGAGT TTTT ACTCCCACTAAAGCTTAGAAATC GTTATCCAGGGACAT TERM 193 102151 - 102200 + F 85 -11.5 -2.57211 | opp_overlap 102151 102149 102154, overlap 102150 102153 102161 ATATTATCATAAACA GAGTTCTTGGCTTCAGGGGGAGT TTTT ACTCCCACTAAAGCTTAGAAATC GTTATCCAGGGACAT TERM 194 102197 - 102154 - f 86 -11.8 -2.61255 | opp_overlap 102153 102151 102150 102161, overlap 102151 102149 TTATCATAAACAGAG TTCTTGGCTTCAGGGGGAGT TTTT ACTCCCACTAAAGCTTAGAA ATCGTTATCCAGGGA TERM 195 102946 - 102929 - g 83 -2.1 -5.95539 | gap 1 TTTTAAATAAAAAAA TAGGTAAT ATA ATT-CCTA ATAACTTTACCTCAA CLI_0133 102304 - 103809 + | hypothetical protein TERM 196 104314 - 104302 - g 80 -6.3 -4.92385 | overlap 104313 GATATTCAAATAAAA GCTTT TAA AAAGC AAATGGAATTAGCAG CLI_0134 103960 - 104754 + | TatD family hydrolase CLI_0135 104982 - 106040 + | 3D/G5 domain-containing protein TERM 197 106047 - 106064 + F 100 -9.9 -5.80817 | opp_overlap 106046 106049 TTAGATTAATTTAAG TAGGAGC GTTA GCTCCTA TTTTTTTCTATTAAA CLI_0136 106113 - 106658 + | primase-related protein ksgA 106660 - 107487 + | dimethyladenosine transferase TERM 198 108479 - 108465 - g 81 -2.9 -5.68438 | TGATGAAATAAAAAA TTGTA TTTGG TACAA AATAGATGCTAAAGA CLI_0138 107566 - 108795 + | hypothetical protein TERM 199 108793 - 108818 + F 88 -6.9 -5.57729 | opp_overlap 108795, overlap 108795 TTAATACCTGTTAAA TAGGGGCATGT TAAT ACATGTCTCTG TTTTTTATGTTGTTT TERM 200 108795 - 108816 + F 77 -7.3 -4.38219 | opp_overlap 108795, overlap 108793 AATACCTGTTAAATA GGGGCATGT TAAT ACATGTCTC TGTTTTTTATGTTGT CLI_0139 108952 - 109539 + | hypothetical protein TERM 201 109565 - 109611 + F 100 -14.7 -4.89852 | opp_overlap 109581 GTATCGAAGTTGATA TGTTCCCCTTAAGGAAGAT AGATTAAAA ATCTACCTTAAGGGGAGCA TTTTTGTGCATATAA CLI_0140 109704 - 110537 + | putative lipoprotein TERM 202 110587 - 110543 - f 83 -7.9 -4.65747 | opp_overlap 110528 110544 110556, overlap 110545 110556 GAATTTTTAATAAAA GATTCTTGTAAAACCCCATGC ATT GCGTGGGGTTTTGCAAAAAAT AAATTAATTATAGGA TERM 203 110544 - 110586 + F 91 -13.6 -2.62043 | opp_overlap 110543 110545 110556, overlap 110528 110556 AATTTTTAATAAAAG ATTCTTGTAAAACCCCATGC ATT GCGTGGGGTTTTGCAAAAAA TAAATTAATTATAGG TERM 204 110585 - 110545 - f 100 -14.9 -3.93768 | opp_overlap 110528 110544 110556, overlap 110543 110556 ATTTTTAATAAAAGA TTCTTGTAAAACCCCATGC ATT GCGTGGGGTTTTGCAAAAA ATAAATTAATTATAG TERM 205 110574 - 110556 - f 93 -10.2 -4.09511 | opp_overlap 110544 110556, overlap 110545 110543 AAGATTCTTGTAAAA CCCCATGC ATT GCGTGGGG TTTTGCAAAAAATAA TERM 206 110556 - 110574 + F 100 -12.4 -4.08216 | opp_overlap 110556 110545 110543, overlap 110544 AAGATTCTTGTAAAA CCCCATGC ATT GCGTGGGG TTTTGCAAAAAATAA CLI_0141 110705 - 111766 + | RND family marcrolide efflux protein CLI_0142 111777 - 112472 + | putative macrolide efflux ABC transporter, ATP-binding protein CLI_0143 112469 - 113677 + | putative macrolide efflux ABC transporter, permease protein CLI_0144 113759 - 114601 + | MRP protein-like protein TERM 207 114602 - 114639 + F 100 -18.1 -4.33928 | opp_overlap 114602 114605 AATTTATATAAATAA TAATAAGGCTTCAATGA ATAT TCATTGAGGCCTTATTA TTTATATTTAAAATA TERM 208 114639 - 114602 - f 100 -15.9 -4.16301 | opp_overlap 114602, overlap 114605 AATTTATATAAATAA TAATAAGGCTTCAATGA ATAT TCATTGAGGCCTTATTA TTTATATTTAAAATA TERM 209 114636 - 114605 - f 100 -13.2 -4.18983 | opp_overlap 114602, overlap 114602 TTATATAAATAATAA TAAGGCTTCAATGA ATAT TCATTGAGGCCTTA TTATTTATATTTAAA CLI_0145 114738 - 114929 + | iron-sulfur cluster-binding protein CLI_0146 115551 - 115375 - | hypothetical protein TERM 210 116230 - 116214 - g 82 -6.7 -4.95167 | CAATTAATAATAAAA TCTTTTA TGG TAAAAGA AGAATTAATACATAA CLI_0147 115629 - 116699 + | putative diguanylate cyclase CLI_0148 116756 - 117484 + | mgtC family protein TERM 211 117535 - 117492 - f 100 -17.3 -4.78107 | opp_overlap 117492 TATTATGATGAAAAA TAACAAGAACATATATTTT ATTTTA AAAATATATGTTCTTGTTA TTTTTTGTACTAAAA TERM 212 117492 - 117535 + F 100 -17.3 -5.31275 | opp_overlap 117492 TATTATGATGAAAAA TAACAAGAACATATATTTT ATTTTA AAAATATATGTTCTTGTTA TTTTTTGTACTAAAA TERM 213 118864 - 118842 - g 72 -7.8 -3.67296 | TACTATTTATTTAAA TTAGCTGCTA AAA TAGCAGGTAA GAGAATGAACCCTAC TERM 214 119158 - 119148 - g 76 -2.6 -5.54894 | AATGTACTAAAAAAA TTAA GAG TTAA AGATTTACCTTTTGT nrdD 117774 - 119915 + | anaerobic ribonucleoside triphosphate reductase nrdG 119932 - 120456 + | anaerobic ribonucleoside-triphosphate reductase activating protein TERM 215 120502 - 120550 + T 100 -24.5 -2.87132 | opp_overlap 120505 120510, overlap 120505 120510 GATTAGATAACTATT TAATAAAAGGGTGTATAACTTTA AAA TAAAGTTATACACCCTTTTATTG TCTATAAAGAAAACC TERM 216 120505 - 120547 + T 100 -24 -3.58726 | opp_overlap 120505 120510, overlap 120502 120510 TAGATAACTATTTAA TAAAAGGGTGTATAACTTTA AAA TAAAGTTATACACCCTTTTA TTGTCTATAAAGAAA TERM 217 120547 - 120505 - T 100 -24 -3.15677 | opp_overlap 120505 120502 120510, overlap 120510 TAGATAACTATTTAA TAAAAGGGTGTATAACTTTA AAA TAAAGTTATACACCCTTTTA TTGTCTATAAAGAAA TERM 218 120510 - 120542 + T 100 -19.5 -4.87592 | opp_overlap 120510 120505, overlap 120505 120502 AACTATTTAATAAAA GGGTGTATAACTTTA AAA TAAAGTTATACACCC TTTTATTGTCTATAA TERM 219 120542 - 120510 - T 100 -19.5 -4.69656 | opp_overlap 120505 120502 120510, overlap 120505 AACTATTTAATAAAA GGGTGTATAACTTTA AAA TAAAGTTATACACCC TTTTATTGTCTATAA TERM 220 120688 - 120665 - T 77 -6.8 -4.72188 | opp_overlap 120665 TGAAGTGAAAAGAAA TAGAAAGCAA GCTA TAGCTTTCTA TTCTACGATTTAGAC TERM 221 120774 - 120784 + T 73 -5.4 -4.86385 | CCGGCAAGAATATCT TCAG TAG CTGA TTTGTTTTTGAGCGT CLI_0151 121656 - 120982 - | hypothetical protein TERM 222 121051 - 121061 + g 70 -4 -4.9218 | opp_overlap 121051 TGCTATAAAAATTAA TACA TAG TGTA TTTTTGTAGTAAATA CLI_0152 121996 - 121658 - | PadR family transcriptional regulator TERM 223 122119 - 122095 - R 93 -7.3 -5.77677 | overlap 122085 TAAAATAATAAAAAA TAGCTATTTTT ATT ATAAATAGCTA AATCATATTAAGTAT CLI_0153 122755 - 122117 - | putative zinc-dependent hydrolase TERM 224 122230 - 122242 + g 70 -6.3 -4.07089 | GAATTAAAAAACCTT CTAGA CCA TCTAG TTTAATCTTTATATT TERM 225 123126 - 123147 + H 89 -4.4 -5.99154 | overlap 123117 GTATAGCGAATGTAA CTTCGTCC TATTAT GGATGGAG TTTTTTTGTTTAATA TERM 226 125821 - 125803 - g 76 -9 -3.48914 | overlap 125799 TGAAATAAAACCTAA TTTACCTA TAC TAGGTAAA AAGTATGGAAGATTT ileS 123197 - 126313 + | isoleucyl-tRNA synthetase TERM 227 126326 - 126360 + F 100 -10.3 -5.58179 | opp_overlap 126323 126324, overlap 126323 126328 126337 TAGCACGTATAATTT TATGCATAGAATAAA AATTG TTTATTCTATGCACA TTTTTTATTATAATA TERM 228 126328 - 126358 + F 93 -12.9 -2.94342 | opp_overlap 126323 126324, overlap 126323 126326 126337 GCACGTATAATTTTA TGCATAGAATAAA AATTG TTTATTCTATGCA CATTTTTTATTATAA TERM 229 126966 - 126953 - g 74 -6.7 -4.3487 | overlap 126956 ATAGATAATTTAAAA GCATC TTTA GATGC TACAGAATACTTAAT CLI_0155 126464 - 127462 + | LacI family transcription regulator TERM 230 131243 - 131257 + G 76 -2.9 -5.60689 | CAGTGAGTAGAGCTA GAAAT CAAAT ATTTC TTTTTTATTCTATAG CLI_0156 127678 - 131730 + | hypothetical protein CLI_0157 131805 - 132872 + | putative mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase TERM 231 132877 - 132910 + F 100 -13.5 -5.63645 | opp_overlap 132877 AATATATATAAAAAA TAGTATGGATATTAA TTTT TTGATATCCATACTA TTTTTTATATTTTCA TERM 232 132910 - 132877 - f 100 -11.3 -5.46276 | opp_overlap 132877 AATATATATAAAAAA TAGTATGGATATTAA TTTT TTGATATCCATACTA TTTTTTATATTTTCA TERM 233 133533 - 133480 - g 77 -8.3 -3.76169 | overlap 133469 133475 133483 133499 TGAACACGAACACAA CCATGAGCATGAGCATGAACATG GCCATGAT CATGAACATAATCATGCTCATGA TCACAGAAATGTGAT TERM 234 133536 - 133483 - g 100 -14.1 -2.96153 | overlap 133469 133475 133480 133499 ACACGAACACAACCA TGAGCATGAGCATGAACATGGCCAT GATC ATGAACATAATCATGCTCATGATCA CAGAAATGTGATAAA TERM 235 133544 - 133499 - g 80 -9.9 -3.23692 | overlap 133469 133475 133480 133483 GAGCATGAGCATGAA CATGGCCATGATCATGAACAT AATC ATGCTCATGATCACAGAAATG TGATAAATATAAATA TERM 236 133971 - 133957 - g 88 -5.8 -5.58522 | TACACAAAACAAAAA TTTTCA TAT TGAAAA AGTTGGATATGGTAT CLI_0158 133208 - 134503 + | hypothetical protein CLI_0159 134508 - 135314 + | hypothetical protein CLI_0160 135334 - 136080 + | hypothetical protein TERM 237 136097 - 136125 + F 100 -14.9 -5.83822 | opp_overlap 136083 136097 136100, overlap 136087 136083 TGTTATTATTTTAAA TAACTTAGTGATT TTA AATCACTAAGTTA TTTTTTTTGAATATA TERM 238 136125 - 136097 - f 100 -14.9 -3.62096 | opp_overlap 136087 136083 136097, overlap 136083 136100 TGTTATTATTTTAAA TAACTTAGTGATT TTA AATCACTAAGTTA TTTTTTTTGAATATA TERM 239 136122 - 136100 - f 100 -12.2 -3.94634 | opp_overlap 136097, overlap 136097 TATTATTTTAAATAA CTTAGTGATT TTA AATCACTAAG TTATTTTTTTTGAAT TERM 240 136857 - 136845 - g 71 -4.9 -4.76041 | opp_overlap 136845 136839 GATATTTATGAAAAA TACAA CGA TTGTA TTTTTATGCCTTTTA TERM 241 136845 - 136857 + G 72 -4.9 -4.97402 | opp_overlap 136845, overlap 136839 GATATTTATGAAAAA TACAA CGA TTGTA TTTTTATGCCTTTTA TERM 242 136950 - 136935 - g 71 -7.6 -3.42482 | overlap 136923 136933 TTAGGTAATATAATA CCAATG TTTT CATTGG AAGGTTTTGAAAAAG CLI_0161 136305 - 137687 + | radical SAM domain-containing protein TERM 243 137713 - 137736 + F 100 -9 -5.50774 | opp_overlap 137713 TCTTATATAAATTAA GGTATTTCAT TTTA ATGAGATACC TTTTTATTTATTCTA TERM 244 138534 - 138501 - g 79 -5.5 -5.01811 | opp_overlap 138509 TTATTAAATGAAAAA GGAATTTACTATTTT GATA AAGATAGTAAATTAC AAATAGATCAACCTG CLI_0162 137874 - 139148 + | putative sugar-binding protein TERM 245 139211 - 139240 + T 100 -8.8 -5.57729 | opp_overlap 139211 TAAAAAAGTATTTAA GAGTCAAAATTT AAGAAA AAATTTTGGCTC TTTTTTATATTATTT CLI_0163 140365 - 139250 - | putative mannosyltransferase TERM 246 139446 - 139432 - G 72 -8.6 -2.98453 | overlap 139431 139434 TATTAATACAACAAT CAGAAG TAA CTTCTG GAATAGAGGTAACGT CLI_0164 140531 - 141541 + | putative spore coat protein CLI_0165 141556 - 141750 + | hypothetical protein CLI_0166 141777 - 142544 + | hypothetical protein TERM 247 143081 - 143054 - g 77 -5.8 -4.91459 | opp_overlap 143057, overlap 143076 TAATATCCATAAAAA TAAGAATGAATT TGAT AATTTATTCTTA TCAGAAATAGATTGC TERM 248 143188 - 143168 - g 70 -4.1 -4.92385 | TATATGTAAAGAAAA TGACAAA ATATCTA TTTGTCA TCATGATTTAGCATA CLI_0167 142557 - 143570 + | putative spore coat protein TERM 249 143636 - 143584 - T 93 -10 -3.99444 | gap 1, opp_overlap 143595 143596 143631 143635, overlap 143586 143588 143634 AATAAGAGTTATAAA CAGAGTTCTAAGCTTCAGAGGGAGT TTTT ACTCCCTCTGAAGCTTATTAA-CAG ACTTCTAGGAGTTTT TERM 250 143636 - 143586 - T 95 -12.1 -3.57639 | gap 1, opp_overlap 143595 143596 143631 143635, overlap 143584 143588 143634 TAAGAGTTATAAACA GAGTT-CTAAGCTTCAGAGGGAGT TTTT ACTCCCTCTGAAGCTTATTAACAG ACTTCTAGGAGTTTT TERM 251 143634 - 143588 - T 100 -19.1 -3.3539 | gap 1, opp_overlap 143595 143596 143631, overlap 143584 143586 AGAGTTATAAACAGA GTT-CTAAGCTTCAGAGGGAGT TTTT ACTCCCTCTGAAGCTTATTAAC AGACTTCTAGGAGTT TERM 252 143595 - 143626 + T 100 -21.8 -3.62522 | opp_overlap 143588 143584 143586, overlap 143596 TAAACAGAGTTCTAA GCTTCAGAGGGAGT TTTT ACTCCCTCTGAAGC TTATTAACAGACTTC TERM 253 143631 - 143669 + T 89 -12.1 -2.90615 | opp_overlap 143588 143584 143586 143634 143636, overlap 143635 143636 143638 CCCTCTGAAGCTTAT TAACAGACTTCT-AGGAGT TTT ACTCCTTAGAAGTC-GTTA TACTTTAGGGGAAAT TERM 254 143666 - 143634 - T 80 -9.4 -3.18681 | opp_overlap 143631 143635 143636 143638, overlap 143584 143586 143636 TCTGAAGCTTATTAA CAGACTTCT-AGGAGT TTT ACTCCTTAGAAGTC-G TTATACTTTAGGGGA TERM 255 143635 - 143666 + T 83 -9.6 -3.60151 | gap 1, opp_overlap 143584 143586 143634 143636, overlap 143631 143636 143638 CTGAAGCTTATTAAC AGACTTCT-AGGAGT TTT ACTCCTTAGAAGTCG TTATACTTTAGGGGA TERM 256 143636 - 143665 + T 91 -13.1 -2.75769 | gap 1, opp_overlap 143634 143636, overlap 143635 143631 143638 TGAAGCTTATTAACA GACTTCT-AGGAGT TTT ACTCCTTAGAAGTC GTTATACTTTAGGGG TERM 257 143665 - 143636 - T 100 -13.1 -3.15574 | gap 1, opp_overlap 143636 143635 143631 143638, overlap 143634 TGAAGCTTATTAACA GACTTCT-AGGAGT TTT ACTCCTTAGAAGTC GTTATACTTTAGGGG TERM 258 143638 - 143663 + T 80 -9.9 -2.92144 | gap 1, opp_overlap 143636 143634, overlap 143636 143635 143631 AAGCTTATTAACAGA CTTCT-AGGAGT TTT ACTCCTTAGAAG TCGTTATACTTTAGG TERM 259 143695 - 143753 + T 100 -27.9 -3.06679 | gap 1, overlap 143699 GAAATCGTTATCCAG GGACGTACCCGCTCTTTACTCCCACTTT GAAG AAGGTGGGAGTAAAGAGCGGGTA-GTCA TTGGATAAAGATATT TERM 260 143699 - 143750 + T 100 -28.4 -2.75183 | overlap 143695 TCGTTATCCAGGGAC GTACCCGCTCTTTACTCCCACTTT GAAG AAGGTGGGAGTAAAGAGCGGGTAG TCATTGGATAAAGAT TERM 261 143924 - 143898 - T 72 -8.1 -3.21225 | opp_overlap 143898 143900, overlap 143891 CTAAAAATTATTTAA GACTCCAGT TAAGGGGAG ACTGGAGTC TAATTAGAGCATAGT TERM 262 143898 - 143924 + T 72 -8.8 -2.7185 | opp_overlap 143891 143898, overlap 143900 CTAAAAATTATTTAA GACTCCAGTT AAGGGGA GACTGGAGTC TAATTAGAGCATAGT CLI_0168 145051 - 143924 - | glycosyl transferase, group 1 family protein TERM 263 145235 - 145225 - g 71 -6.8 -4.00407 | ATTGAAAAACTTAAA CCTC ATA GAGG AGTATATCATTTAAA cotS 145168 - 146172 + | spore coat protein CotS TERM 264 146180 - 146220 + F 85 -10 -3.25538 | opp_overlap 146170 146177 146181 146185, overlap 146177 146179 146181 AAGAATAATGAATAC ATTAAGGCATATGAAGCT TATGT AGTTTTATATGCCTTAAA TAGTTTTATTAACAA TERM 265 146181 - 146219 + F 91 -13.5 -2.54841 | opp_overlap 146170 146181 146177 146185, overlap 146180 146177 146179 AGAATAATGAATACA TTAAGGCATATGAAGCT TATGT AGTTTTATATGCCTTAA ATAGTTTTATTAACA TERM 266 146219 - 146181 - f 75 -9.1 -3.23854 | opp_overlap 146180 146177 146179 146181, overlap 146170 146177 146185 AGAATAATGAATACA TTAAGGCATATGAAGCT TATGT AGTTTTATATGCCTTAA ATAGTTTTATTAACA CLI_0170 146296 - 147198 + | peptidase family protein TERM 267 147502 - 147491 - g 71 -3 -5.31855 | GAGGAAGAAGAAAAA CATT TGTT AATG AAGGTGTACTAGAAG CLI_0171 147394 - 147630 + | hypothetical protein TERM 268 147636 - 147656 + F 100 -11.3 -6.87161 | opp_overlap 147633 147636 TGTATTATAAATGGA TTGGTACTT AAT AAGTACCAA TTTTTTTTTTTTATG TERM 269 147656 - 147636 - f 83 -11.3 -2.72152 | opp_overlap 147636, overlap 147633 TGTATTATAAATGGA TTGGTACTT AAT AAGTACCAA TTTTTTTTTTTTATG CLI_0172 147733 - 149295 + | LysM domain-containing protein TERM 270 149429 - 149405 - f 73 -7.9 -3.71552 | opp_overlap 149404 149402 149401 149397 AGCTTATTAACAGAA TTCTTAGGAGC TTT ACTCCTTAGAA GTCGTTATCCTTTAG TERM 271 149563 - 149606 + F 86 -7.7 -4.87665 | opp_overlap 149564, overlap 149564 ATATATAAATAAAAA AGCTCTATATGACAATAAT AGTATA AGTATTGTTATATAGAGCA TTTTTGTGCATAAAA TERM 272 149564 - 149605 + F 95 -11.2 -3.52117 | opp_overlap 149564, overlap 149563 TATATAAATAAAAAA GCTCTATATGACAATAAT AGTATA AGTATTGTTATATAGAGC ATTTTTGTGCATAAA TERM 273 149605 - 149564 - f 100 -9 -5.76237 | opp_overlap 149564 149563 TATATAAATAAAAAA GCTCTATATGACAATAAT AGTATA AGTATTGTTATATAGAGC ATTTTTGTGCATAAA CLI_0173 149592 - 149705 + | hypothetical protein TERM 274 149704 - 149688 - gf 73 -3.7 -5.27335 | overlap 149698 TTTTGCAAAGAAAAA TACAAGG TAA CCTCATA ATCATAGGAGGAGCT cphB 149675 - 150475 + | cyanophycinase cphA 150519 - 153140 + | cyanophycin synthetase TERM 275 153182 - 153143 - f 81 -10.4 -2.66435 | gap 1, opp_overlap 153143, overlap 153148 AGCTTTAGCATAGGA TTAAAGCTACAATTTATGA ATA TCATGA-TTGTAGCTTTAA TTTTTTTGATGTATT TERM 276 153143 - 153182 + F 100 -12.6 -5.62219 | gap 1, opp_overlap 153143 153148 AGCTTTAGCATAGGA TTAAAGCTACAATTTATGA ATA TCATGA-TTGTAGCTTTAA TTTTTTTGATGTATT TERM 277 153937 - 153913 - g 74 -7.4 -3.96051 | ATACAAGACATTAAA TTCTATAAAA AGTAA TTTTATAGAA TTAGGAGCATTAGGA ispE 153233 - 154075 + | 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase TERM 278 154338 - 154285 - f 93 -12.1 -3.18383 | gap 3, opp_overlap 154282 154300, overlap 154289 ATCGTTATCCAGGAA CGTACCCGCTCT-TTACTCCCA-CTT TGAAG AAGATGGGAGTATTAGAGCGGGTA-G TCATCGGATAAAGCT TERM 279 154335 - 154289 - f 100 -14 -2.57244 | gap 2, opp_overlap 154282 154300, overlap 154285 TTATCCAGGAACGTA CCCGCTCT-TTACTCCCA-CTT TGAAG AAGATGGGAGTATTAGAGCGGG TAGTCATCGGATAAA TERM 280 154456 - 154468 + G 76 -3.5 -5.48054 | opp_overlap 154456 GAAGAATAATAGACA TATTT GAT AAATA TTTTTTAATTTTAAT CLI_0177 154437 - 154634 + | hypothetical protein CLI_0178 154695 - 156155 + | spore germination protein TERM 281 156974 - 156946 - g 100 -11.3 -4.51699 | overlap 156938 ATAACCATGATAAAA TCAATAAATATAC CAG GTACATTTATTGA AAGATGGGAAGGTAT CLI_0179 156175 - 157272 + | spore germination protein CLI_0180 157322 - 158500 + | Ger(x)C family germination protein CLI_0181 158573 - 159205 + | stage II sporulation protein R TERM 282 159236 - 159212 - T 83 -7.3 -5.08878 | opp_overlap 159210 159212 AAGAGATAAATAAAA CTCTGTATT TGAAAAT AATACAGAG TAATTTTATAACAAA CLI_0182 160483 - 159242 - | hypothetical protein TERM 283 160048 - 160027 - G 78 -10.3 -2.73067 | opp_overlap 160032, overlap 160020 160029 160032 CTGAATTAGATACTA CATAAGCAT CCGT ATGCTTATG AATCCAAAAACTATG ypeB 160856 - 162226 + | germination protein YpeB TERM 284 162270 - 162239 - f 100 -11.9 -4.35874 | opp_overlap 162239 162243, overlap 162243 TAATATAATTTAAAA TAAAGAGTGAATA ATAGTG TATTCACTCTTTA TTTGTATTATAATAA TERM 285 162239 - 162270 + F 100 -11.9 -4.29304 | opp_overlap 162239 162243, overlap 162243 TAATATAATTTAAAA TAAAGAGTGAATA ATAGTG TATTCACTCTTTA TTTGTATTATAATAA TERM 286 162243 - 162266 + F 85 -8.3 -4.70921 | opp_overlap 162239 162243, overlap 162239 ATAATTTAAAATAAA GAGTGAATA ATAGTG TATTCACTC TTTATTTGTATTATA TERM 287 162266 - 162243 - f 85 -8.3 -4.73092 | opp_overlap 162243 162239, overlap 162239 ATAATTTAAAATAAA GAGTGAATA ATAGTG TATTCACTC TTTATTTGTATTATA CLI_0184 162329 - 163309 + | hypothetical protein TERM 288 163310 - 163298 - f 73 -3.5 -5.48825 | GATTATTTAAAAAAA TTTAT AAT ATAAA TATAAGGAAAAGGAA CLI_0185 163334 - 163762 + | hypothetical protein CLI_0186 163894 - 164193 + | hypothetical protein TERM 289 164419 - 164396 - f 71 -6.8 -4.13767 | CTTTGGAGGTGAAAA CTGCTTTATT ATAT ATTAAAGCAG GGGAGATATGAGCAC pyrG 164427 - 166028 + | CTP synthetase TERM 290 166302 - 166263 - f 100 -14.6 -2.90615 | gap 1, opp_overlap 166266 166267 166299, overlap 166266 166267 166269 166285 ATTTCCCCTAAAGGA TAAC-GACTTCTAAGGAGT AAA ACTCCTAAGAAGTCTGTTA ATAAGCTTCAGTGGG TERM 291 166298 - 166266 - f 95 -12.1 -3.60151 | opp_overlap 166266 166267, overlap 166263 166267 166269 166285 TCCCCTAAAGGATAA CGACTTCTAAGGAGT AAA ACTCCTAAGAAGTCT GTTAATAAGCTTCAG TERM 292 166266 - 166299 + F 93 -11.9 -3.1886 | gap 1, opp_overlap 166266 166263 166267 166269 166285, overlap 166267 TCCCCTAAAGGATAA C-GACTTCTAAGGAGT AAA ACTCCTAAGAAGTCTG TTAATAAGCTTCAGT TERM 293 166267 - 166297 + F 100 -15.6 -3.15574 | opp_overlap 166266 166263 166267 166269 166285, overlap 166266 CCCCTAAAGGATAAC GACTTCTAAGGAGT AAA ACTCCTAAGAAGTC TGTTAATAAGCTTCA TERM 294 166297 - 166267 - f 100 -15.6 -2.75769 | opp_overlap 166267 166266, overlap 166266 166263 166269 166285 CCCCTAAAGGATAAC GACTTCTAAGGAGT AAA ACTCCTAAGAAGTC TGTTAATAAGCTTCA TERM 295 166295 - 166269 - f 89 -12.4 -2.92144 | opp_overlap 166267 166266, overlap 166267 166266 166263 166285 CCTAAAGGATAACGA CTTCTAAGGAGT AAA ACTCCTAAGAAG TCTGTTAATAAGCTT TERM 296 166338 - 166307 - f 100 -14.5 -3.62522 | opp_overlap 166299, overlap 166325 GAAGTCTGTTAATAA GCTTCAGTGGGAG TAAAAG CTCCCTCTGAAGC GAAGAACTCTGTTTA CLI_0188 166528 - 166872 + | hypothetical protein TERM 297 166868 - 166897 + F 77 -5.1 -5.4433 | overlap 166872 AAATATATATGATGG TTTAGAGTAACTT TCAA AAGTTACTCTTTA TTTTTATTTATATAT TERM 298 166872 - 166893 + F 100 -10.3 -5.1502 | overlap 166868 ATATATGATGGTTTA GAGTAACTT TCAA AAGTTACTC TTTATTTTTATTTAT rho 167044 - 168489 + | transcription termination factor Rho TERM 299 168526 - 168498 - T 100 -14.9 -4.3277 | opp_overlap 168498 168503 168523, overlap 168503 TAGATAGAATATAAA TAAAACCTAATCT GAA AGATTAGGTTTTA TACTATTTAACGTCT TERM 300 168498 - 168526 + T 100 -14.9 -2.85565 | opp_overlap 168498 168503, overlap 168503 168523 TAGATAGAATATAAA TAAAACCTAATCT GAA AGATTAGGTTTTA TACTATTTAACGTCT TERM 301 168521 - 168503 - T 100 -10.4 -5.11389 | opp_overlap 168498 168503, overlap 168498 AGAATATAAATAAAA CCTAATCT GAA AGATTAGG TTTTATACTATTTAA TERM 302 168503 - 168521 + T 100 -10.4 -4.58303 | opp_overlap 168503 168498, overlap 168498 AGAATATAAATAAAA CCTAATCT GAA AGATTAGG TTTTATACTATTTAA rpmE 168747 - 168529 - | ribosomal protein L31 tdk 168974 - 169549 + | thymidine kinase CLI_0192 169566 - 170483 + | hypothetical protein TERM 303 170567 - 170539 - g 78 -4 -5.40072 | gap 1, opp_overlap 170526 GGTGTTTTAAAAAAA GCATCTA-TAGAT AGCT ATCAAATAGATGC TCAACTTTTATTAGG CLI_0193 170491 - 171342 + | HemK family modification methylase prfA 171424 - 172500 + | peptide chain release factor 1 CLI_0195 172528 - 173136 + | hypothetical protein CLI_0196 173195 - 173914 + | ZIP transporter family protein TERM 304 174634 - 174610 - g 75 -7.1 -4.13805 | overlap 174602 174612 AAAAAGCCAGATAAA GACCTGAAACC AAA GGCTCCAGGTA TGAAATATAGACACT TERM 305 174632 - 174612 - g 83 -9.7 -3.64364 | overlap 174602 174610 AAAGCCAGATAAAGA CCTGAAACC AAA GGCTCCAGG TATGAAATATAGACA CLI_0197 173935 - 174990 + | Sua5/YciO/YrdC/YwlC family protein CLI_0198 174999 - 175451 + | low molecular weight protein tyrosine phosphatase rpiB 175511 - 175948 + | ribose-5-phosphate isomerase B upp 175978 - 176607 + | uracil phosphoribosyltransferase TERM 306 176670 - 176717 + F 100 -8.3 -5.94713 | opp_overlap 176670 176674 176677 AATACTTTTAGTAAA TAGATAACTATAAAAATAA AGAATAGTAA TTATTTTTATAGTTATTTA TTTTTTTTATAAGAT TERM 307 177321 - 177308 - g 74 -6.7 -4.28656 | AGGGAAGAGCTAAAA GTACC TCGA GGTAC TAGATATGAACTGTG CLI_0201 177113 - 177601 + | cytidine/deoxycytidylate deaminase family protein TERM 308 177872 - 177847 - g 86 -6.2 -5.35222 | opp_overlap 177866, overlap 177848 AAAATTCATAAAAAA CCTATACCAC TTTTAG GTGGTATAGC AATATACATATCTTT TERM 309 177871 - 177848 - g 86 -9.7 -3.78693 | opp_overlap 177866, overlap 177847 AAATTCATAAAAAAC CTATACCAC TTTTAG GTGGTATAG CAATATACATATCTT TERM 310 178105 - 178120 + G 71 -4.8 -4.81551 | opp_overlap 178105 GATCACCTTAACTTA TATGTA GGAT TACATA TTTTTGCTATACCTA tagO 177709 - 178743 + | UDP-GlcNAc:undecaprenyl-P GlcNAc 1-P transferase mnaA 178757 - 179914 + | UDP-N-acetylglucosamine 2-epimerase TERM 311 180169 - 180149 - f 70 -2.7 -5.59564 | opp_overlap 180152 180154, overlap 180152 180161 AGAAATTTAAAAAAA TAGTATAAA TAA TTTATATTA AATAGAATATTGCGA TERM 312 180530 - 180553 + G 74 -8.4 -3.55824 | overlap 180524 180527 TTTGTTTTTTATTAG GATTAATATT AGCT AATATTAATC TATTTATAAATGCTA CLI_0204 180406 - 180774 + | putative ATP synthase protein I TERM 313 181197 - 181210 + G 76 -5.3 -5.05606 | AGTTATTTTCTAGGA TATGG TAAG CCATA TTTATTTTTATTGCC atpB 180789 - 181469 + | F0F1 ATP synthase subunit A atpE 181509 - 181748 + | F0F1 ATP synthase subunit C TERM 314 181800 - 181754 - f 90 -11.3 -3.20878 | opp_overlap 181759, overlap 181759 181767 TAAGATTTAAGGTAA TTTAATTTTATAAGTACCTAT TTATT ATAGGTGCTTATAAAATTTAA GGCCGAAGGGAGGCT TERM 315 181795 - 181759 - f 90 -11.2 -3.20991 | opp_overlap 181759, overlap 181754 181767 TTTAAGGTAATTTAA TTTTATAAGTACCTAT TTATT ATAGGTGCTTATAAAA TTTAAGGCCGAAGGG TERM 316 181759 - 181795 + F 100 -13.4 -3.53012 | opp_overlap 181759 181754 181767 TTTAAGGTAATTTAA TTTTATAAGTACCTAT TTATT ATAGGTGCTTATAAAA TTTAAGGCCGAAGGG atpF 181824 - 182303 + | F0F1 ATP synthase subunit B TERM 317 182515 - 182530 + G 77 -4.8 -5.19251 | opp_overlap 182515 182513 182518, overlap 182516 182518 182523 TAAAGACAAAGTAGA TGATAA AATT TTATCA TTTTTATTAGTATTA atpH 182306 - 182845 + | F0F1 ATP synthase subunit delta atpA 182856 - 184370 + | F0F1 ATP synthase subunit alpha TERM 318 184917 - 184932 + G 82 -7.6 -4.45544 | TCAGAGTTTTATTCA CCTGTT AAGC AACAGG TTTTAATTAATAAAA atpG 184392 - 185240 + | F0F1 ATP synthase subunit gamma atpD 185254 - 186645 + | F0F1 ATP synthase subunit beta atpC 186670 - 187071 + | F0F1 ATP synthase subunit epsilon TERM 319 187085 - 187140 + F 100 -18.1 -5.30686 | opp_overlap 187093 AGAGAAAGCTTTATA GCTTACAAGGTATACATAACTTT GACATTAAAA AATGTTATGTATACCTTGTAAGC TTTTTTGTAAGTATT CLI_0213 187265 - 187972 + | hypothetical protein murA-1 187996 - 189252 + | UDP-N-acetylglucosamine 1-carboxyvinyltransferase TERM 320 189280 - 189303 + F 76 -4.6 -5.33331 | overlap 189268 GTGTATGATAAATAA CTCATGGTGA TTAT TTGCTATGAG TTTTTATTATATTTA spoIID 189524 - 190600 + | stage II sporulation protein D TERM 321 190712 - 190751 + F 85 -11 -2.90615 | gap 1, opp_overlap 190715 190717, overlap 190716 190717 190719 CCCATTAAAGCTTAT TAACAGACTTTTTAGGAGT TTT ACTCCTTAGAAGTC-GTTA TCCTTTAGGGGAAAT TERM 322 190716 - 190748 + F 75 -8.5 -3.60151 | opp_overlap 190715 190717, overlap 190712 190717 190719 TTAAAGCTTATTAAC AGACTTTTTAGGAGT TTT ACTCCTTAGAAGTCG TTATCCTTTAGGGGA TERM 323 190747 - 190717 - f 85 -9.8 -3.16288 | opp_overlap 190716 190712 190717 190719, overlap 190715 TAAAGCTTATTAACA GACTTTTTAGGAGT TTT ACTCCTTAGAAGTC GTTATCCTTTAGGGG TERM 324 190717 - 190747 + F 88 -12 -2.75769 | opp_overlap 190717 190715, overlap 190716 190712 190719 TAAAGCTTATTAACA GACTTTTTAGGAGT TTT ACTCCTTAGAAGTC GTTATCCTTTAGGGG TERM 325 190719 - 190745 + F 73 -8.8 -2.92144 | opp_overlap 190717 190715, overlap 190717 190716 190712 AAGCTTATTAACAGA CTTTTTAGGAGT TTT ACTCCTTAGAAG TCGTTATCCTTTAGG CLI_0216 191187 - 191933 + | putative peptidase TERM 326 191971 - 191940 - f 79 -8.7 -3.77071 | overlap 191938 191941 AAATATTAATAAAGA TGCCATTTTCCGC TTTTAT GCGGAAAGTGGCT AAATATAAATGAATT TERM 327 191970 - 191941 - f 89 -12.2 -2.84616 | overlap 191940 191938 AATATTAATAAAGAT GCCATTTTCCGC TTTTAT GCGGAAAGTGGC TAAATATAAATGAAT spoIIID 192041 - 192295 + | stage III sporulation protein D CLI_0218 192395 - 193423 + | mbl protein TERM 328 193499 - 193452 - T 100 -15.4 -2.912 | gap 1, opp_overlap 193452 193459 193493, overlap 193454 193459 ATATAAATGACTACA TAT-AAAATTAAAGCTCTTGAGT AAT ACTCATGAGCTTTAATTTTTATA TTAATGTAAAATAAT TERM 329 193452 - 193499 + T 100 -15.4 -3.272 | gap 1, opp_overlap 193452 193454 193459, overlap 193459 193493 ATATAAATGACTACA TAT-AAAATTAAAGCTCTTGAGT AAT ACTCATGAGCTTTAATTTTTATA TTAATGTAAAATAAT TERM 330 193496 - 193454 - T 100 -15.2 -2.99874 | opp_overlap 193452 193459 193493, overlap 193452 193459 ATAAATGACTACATA TAAAATTAAAGCTCTTGAGT AAT ACTCATGAGCTTTAATTTTT ATATTAATGTAAAAT TERM 331 193491 - 193459 - T 100 -15.1 -4.62984 | opp_overlap 193452 193459, overlap 193454 193452 TGACTACATATAAAA TTAAAGCTCTTGAGT AAT ACTCATGAGCTTTAA TTTTTATATTAATGT TERM 332 193459 - 193491 + T 100 -15.1 -5.13344 | opp_overlap 193459 193454 193452, overlap 193452 TGACTACATATAAAA TTAAAGCTCTTGAGT AAT ACTCATGAGCTTTAA TTTTTATATTAATGT CLI_0219 194072 - 193548 - | hypothetical protein TERM 333 194082 - 194113 + r 87 -10.4 -3.24423 | opp_overlap 194080 194079 194095 ATTCAAAACACACCC CTCCTTATATTAAT ATAT ATGAATATAAGGAG TTAAATATTATTGGA CLI_0220 194843 - 194121 - | hypothetical protein TERM 334 194684 - 194714 + g 74 -2.1 -5.53991 | gap 1, opp_overlap 194691, overlap 194686 194691 ATGTTATAGCTATTA AATCAAA-TTTTTC AGGA GAAAAACTTTGATA TTTTTTTAGTAGATG TERM 335 194859 - 194906 + H 85 -10.4 -3.0464 | opp_overlap 194863 194871, overlap 194861 194863 194871 194871 194873 CATATTCCTCCCTAG TATATGTATAAATTTATATTAT AAAT ATATTATAAATTAATACATATA TATTACAAATAAATT TERM 336 194861 - 194904 + H 71 -8.6 -3.07895 | opp_overlap 194863 194871, overlap 194859 194863 194871 194871 194873 TATTCCTCCCTAGTA TATGTATAAATTTATATTAT AAAT ATATTATAAATTAATACATA TATATTACAAATAAA CLI_0224 195077 - 195259 + | hypothetical protein TERM 337 195511 - 195533 + F 100 -12.2 -5.49568 | opp_overlap 195511 TCCTCCTCCACCAAA CATCTTTACT TAA AGTAAAGATG TTTTTATTTTGCATT TERM 338 195533 - 195511 - f 95 -12.2 -3.72576 | opp_overlap 195511 TCCTCCTCCACCAAA CATCTTTACT TAA AGTAAAGATG TTTTTATTTTGCATT TERM 339 195658 - 195646 - g 74 -6.3 -4.37348 | AATAATAATAAAGAA CTCTT ATC AAGAG AGGTGGAGGGAAAAG CLI_0230 195610 - 195744 + | hypothetical protein TERM 340 195766 - 195784 + F 100 -8.9 -5.42198 | opp_overlap 195766 GTAGTTAGACAATAA CCTCTTC TTATT GAAGAGG TTTTATTTTTTAGAC TERM 341 195784 - 195766 - f 81 -8.9 -3.8969 | opp_overlap 195766 GTAGTTAGACAATAA CCTCTTC TTATT GAAGAGG TTTTATTTTTTAGAC TERM 342 196327 - 196315 - g 90 -6.3 -5.57396 | opp_overlap 196313 196315 AGAAGTAAGAAAAAA TGGTA CAT TACCA TATTTGAGACCAGAT metK 195827 - 197002 + | S-adenosylmethionine synthetase TERM 343 197022 - 197060 + F 100 -9.1 -5.19212 | gap 1, opp_overlap 197028, overlap 197028 ATATTAGTATTAATA TGAAAAGGAATGGACATG ATAA CATG-CCATTCCTTTATA TTTTTTCATAATAAT TERM 344 197028 - 197054 + F 100 -10.3 -4.66347 | gap 1, opp_overlap 197028, overlap 197022 GTATTAATATGAAAA GGAATGGACATG ATAA CATG-CCATTCC TTTATATTTTTTCAT TERM 345 197054 - 197028 - f 100 -10.3 -4.44797 | gap 1, opp_overlap 197028 197022 GTATTAATATGAAAA GGAATGGACATG ATAA CATG-CCATTCC TTTATATTTTTTCAT TERM 346 197131 - 197116 - f 85 -6.2 -5.46698 | opp_overlap 197116 GCTAAAATTAAAAAA GTATAG ATTC CTATAC TTATAAGCAGCGGTA CLI_0232 197193 - 199427 + | RecD/TraA family helicase CLI_0233 199453 - 200475 + | hypothetical protein CLI_0234 200448 - 201125 + | comF protein,-like protein TERM 347 201353 - 201381 + F 91 -8.3 -4.93898 | opp_overlap 201356 CTAATTTTAACTAAT TGAGGCTTATAGT ATA ACTATAGGTCTTA TTTTTATAATAATAT TERM 348 201651 - 201669 + G 70 -8.2 -3.12351 | ATTTTTCAACCCTGA TGTAGTTG CAA CAGCTACA TTGAGTGTACACAAA yfiA 201550 - 202077 + | ribosomal subunit interface protein TERM 349 202142 - 202115 - f 100 -10.8 -4.40037 | opp_overlap 202115 AAAGAATTAGTAAAA GTAGACATATAC AAGA ATATATGTCTAC TTTTTATATAGATAA TERM 350 202115 - 202142 + F 100 -10.1 -4.99035 | opp_overlap 202115 AAAGAATTAGTAAAA GTAGACATATA CAAGAA TATATGTCTAC TTTTTATATAGATAA secA 202305 - 204812 + | preprotein translocase subunit SecA prfB 205176 - 206153 + | peptide chain release factor 2 TERM 351 206185 - 206235 + T 95 -10.3 -4.09685 | opp_overlap 206190, overlap 206190 ATAAAGGGGATGCCT TAAAATAGATTTAATTTCAATAT CATAA ATATAAAAATTAAATCTATTTTA TTTTGAGACATCCCC TERM 352 206190 - 206230 + T 75 -5.8 -5.07652 | opp_overlap 206190, overlap 206185 GGGGATGCCTTAAAA TAGATTTAATTTCAATAT CATAA ATATAAAAATTAAATCTA TTTTATTTTGAGACA TERM 353 206230 - 206190 - T 82 -8.7 -4.09685 | opp_overlap 206190 206185 GGGGATGCCTTAAAA TAGATTTAATTTCAATATC ATA AATATAAAAATTAAATCTA TTTTATTTTGAGACA TERM 354 206405 - 206356 - T 78 -10.1 -2.57211 | opp_overlap 206356 206358, overlap 206355 206358 ACGTCTCTGGATAAC GATTTCTAAGCTTTAGTGGGAGT AAAA ACTCCCTCTAAAGACAAGAACTC TGCTTATAATAAATA CLI_0238 207770 - 206409 - | peptidase family protein TERM 355 206560 - 206578 + g 90 -8.2 -4.90296 | opp_overlap 206562 TTTATAATTTTTAAT GATGCTAT ATT GTAGCATC TTTTTATAGAATTTT CLI_0239 207878 - 210034 + | RNA-binding protein TERM 356 210237 - 210270 + F 100 -14.1 -4.74103 | opp_overlap 210224 210243, overlap 210243 AATTGTAAGTATGAT TACAAAGCCCTGATA GTAT TATCAGGGCTTTTTA TTTTTCACTTGGAAA TERM 357 210243 - 210264 + F 100 -13.1 -5.63236 | opp_overlap 210243, overlap 210237 AAGTATGATTACAAA GCCCTGATA GTAT TATCAGGGC TTTTTATTTTTCACT TERM 358 210264 - 210243 - f 100 -13.1 -4.0044 | opp_overlap 210237 210243 AAGTATGATTACAAA GCCCTGATA GTAT TATCAGGGC TTTTTATTTTTCACT CLI_0240 210318 - 210911 + | hypothetical protein TERM 359 211041 - 211031 - f 73 -5.4 -4.80453 | opp_overlap 211031 211033 211034, overlap 211034 TTATTATAAAACAAA GAAG GGA CTTC TTATATTACACTTTT TERM 360 212403 - 212386 - g 71 -4.9 -4.79053 | AAACATTAAAACAAA GCCAATA GAGG TATTAGC TAATAAAGGACAAGT CLI_0241 211322 - 212971 + | hypothetical protein CLI_0242 212992 - 213252 + | hypothetical protein CLI_0243 213266 - 213952 + | Ser/Thr protein phosphatase family protein CLI_0244 214036 - 214317 + | ArsR family transcriptional regulator CLI_0245 214357 - 216810 + | pyridine nucleotide-disulphide oxidoreductase family protein TERM 361 216856 - 216812 - T 100 -14.8 -4.06678 | opp_overlap 216812 216823, overlap 216823 ATTTATTCATATAAA TAAAATAAAAATCCTATGGA ACATG TTCATAGGATTTTTATTTTA TTTAGAAATCTAGAT TERM 362 216812 - 216856 + T 100 -17 -3.5944 | opp_overlap 216812 216823, overlap 216823 ATTTATTCATATAAA TAAAATAAAAATCCTATGGA ACATG TTCATAGGATTTTTATTTTA TTTAGAAATCTAGAT TERM 363 216823 - 216845 + T 93 -7.1 -5.67711 | opp_overlap 216823 216812, overlap 216812 TAAATAAAATAAAAA TCCTATGGA ACATG TTCATAGGA TTTTTATTTTATTTA TERM 364 216845 - 216823 - T 84 -4.9 -5.67711 | opp_overlap 216812 216823, overlap 216812 TAAATAAAATAAAAA TCCTATGGA ACATG TTCATAGGA TTTTTATTTTATTTA CLI_0246 217692 - 216838 - | hypothetical protein CLI_0247 217849 - 218637 + | RelA/SpoT domain-containing protein CLI_0248 218788 - 218901 + | hypothetical protein leuS 221382 - 218941 - | leucyl-tRNA synthetase TERM 365 219635 - 219651 + g 73 -5.9 -4.59376 | TTTATATAATCATCA GGAGATA TAG TATTTCC TTTTGATTTACTCAT TERM 366 220909 - 220926 + g 70 -4.1 -4.96501 | opp_overlap 220905, overlap 220905 AGTATTACAACTTGG GCACC AATTTACA GGTGC TTTCTTTTTATAAGC TERM 367 221498 - 221469 - R 86 -3.7 -6.14618 | gap 1 TATAAAATAAAAAAA CCTTCATCTCC-TA AAT TATAGAGACGAAAG GTTATCCGCGGTACC CLI_0250 222163 - 221759 - | hypothetical protein TERM 368 222041 - 222059 + g 74 -5.4 -4.89393 | TGATATTATATGCTT TATTTCTT CAG GAGAAATA TTTTTGTAAGCTTTA TERM 369 222324 - 222310 - R 70 -4.4 -4.93454 | CAAAGAAAGATAAAA TTTTAT AAA ATAAAA AAGAGTCCTTAAGAA TERM 370 222345 - 222327 - R 100 -8.2 -5.86976 | opp_overlap 222327 TTATAAAATAAAAAA GAGTCCTT AAG AAGAACTC TTTTGGCTGCCCATG CLI_0253 223001 - 222477 - | hypothetical protein CLI_0254 223625 - 223026 - | DnaJ family molecular chaperone CLI_0255 224487 - 223612 - | hypothetical protein TERM 371 223765 - 223775 + g 70 -4 -4.94487 | GGCGCAGTTTACCAG TAGA AAA TCTA TTTTATCTTTTATAC TERM 372 224087 - 224069 - G 79 -6 -5.01732 | opp_overlap 224068 224070, overlap 224070 AAGCTTTTCAAAAAA TTATCCAC AGT GTGGATAT GTTTTTCATATAAAT TERM 373 224070 - 224086 + g 86 -9.5 -4.02302 | opp_overlap 224069 224070, overlap 224068 AGCTTTTCAAAAAAT TATCCAC AGT GTGGATA TGTTTTTCATATAAA TERM 374 224086 - 224070 - G 81 -9.5 -3.60316 | opp_overlap 224070 224068, overlap 224069 AGCTTTTCAAAAAAT TATCCAC AGT GTGGATA TGTTTTTCATATAAA TERM 375 224246 - 224256 + g 88 -4 -5.72622 | AGTGCTTCGTTATCG GTTA TAA TAAC TTTTTTCTTTATAGG CLI_0256 225030 - 224491 - | putative adenylyl cyclase CyaB TERM 376 225178 - 225197 + H 77 -5.2 -5.40004 | opp_overlap 225178, overlap 225191 TTGATTTTGGTAAAA TATTTTAT ATTT ATAAAATA TTTTTTAATTTAATA CLI_0257 225337 - 226374 + | hypothetical protein TERM 377 226620 - 226580 - T 100 -13.8 -6.10295 | gap 1, opp_overlap 226580 TTAATATAAAAAAAA TAGTAGATAGATTTATTCT TAAC AGAA-AAATCTATCTACTA TTATATCAAATATTA TERM 378 226580 - 226620 + T 100 -13.8 -3.52079 | gap 1, opp_overlap 226580 TTAATATAAAAAAAA TAGTAGATAGATTTATTCT TAAC AGAA-AAATCTATCTACTA TTATATCAAATATTA fba 227581 - 226655 - | fructose-1,6-bisphosphate aldolase, class II TERM 379 227619 - 227647 + r 73 -8.9 -2.77779 | opp_overlap 227603 227619 227620 227621 227623 227637, overlap 227637 AAATTTAAAAATAAA TTCATAGGGACGT ATT AAGTCCCTATGGG ACTTTTATTTATTAA TERM 380 227647 - 227619 - R 70 -4.5 -4.92828 | opp_overlap 227619 227637, overlap 227603 227620 227621 227623 227637 AAATTTAAAAATAAA TTCATAGGGACGT ATT AAGTCCCTATGGG ACTTTTATTTATTAA TERM 381 227646 - 227620 - R 72 -8 -3.53257 | opp_overlap 227619 227637, overlap 227603 227619 227621 227623 227637 AATTTAAAAATAAAT TCATAGGGACGT ATT AAGTCCCTATGG GACTTTTATTTATTA TERM 382 227645 - 227621 - R 86 -11.5 -2.70327 | opp_overlap 227619 227637, overlap 227603 227620 227619 227623 227637 ATTTAAAAATAAATT CATAGGGACGT ATT AAGTCCCTATG GGACTTTTATTTATT TERM 383 227637 - 227649 + r 100 -9.1 -5.10665 | opp_overlap 227623 227621 227620 227619 227637, overlap 227619 ATAGGGACGTATTAA GTCCC TAT GGGAC TTTTATTTATTAACT TERM 384 227649 - 227637 - R 75 -9.1 -3.19091 | opp_overlap 227619 227637, overlap 227623 227621 227620 227619 ATAGGGACGTATTAA GTCCC TAT GGGAC TTTTATTTATTAACT CLI_0259 228091 - 227807 - | hypothetical protein CLI_0260 228876 - 228208 - | hypothetical protein TERM 385 230510 - 230492 - g 74 -2.4 -5.58454 | opp_overlap 230478, overlap 230495 TGTATATTAAAAAAA TATGCTCT TGC AGAACTTA ACAAAATAGATAAAA TERM 386 230562 - 230572 + G 72 -4 -5.01732 | opp_overlap 230562, overlap 230555 230563 CAACTAGGTTAAAAA GTTT TTT AAAC TTTTTTAAAGAAGTT CLI_0261 229001 - 230659 + | putative threonyl-tRNA synthetase/uridine kinase TERM 387 230660 - 230696 + F 100 -16.9 -2.83899 | opp_overlap 230665 230668 230673, overlap 230665 TTCTATGAATATTAA TGAAATAAGGAAAGTGC GCT GCACTTTCCTTATTTTG CTTTAGTAACAACTT TERM 388 230665 - 230691 + F 100 -16.8 -4.58773 | opp_overlap 230665 230668 230673, overlap 230660 TGAATATTAATGAAA TAAGGAAAGTGC GCT GCACTTTCCTTA TTTTGCTTTAGTAAC TERM 389 230691 - 230665 - f 100 -16.8 -4.00469 | opp_overlap 230665 230660, overlap 230668 230673 TGAATATTAATGAAA TAAGGAAAGTGC GCT GCACTTTCCTTA TTTTGCTTTAGTAAC TERM 390 230688 - 230668 - f 100 -14.1 -4.11039 | opp_overlap 230665 230660, overlap 230665 230673 ATATTAATGAAATAA GGAAAGTGC GCT GCACTTTCC TTATTTTGCTTTAGT TERM 391 230683 - 230673 - f 71 -6.8 -4.17274 | opp_overlap 230665 230660, overlap 230668 230665 AATGAAATAAGGAAA GTGC GCT GCAC TTTCCTTATTTTGCT CLI_0262 230797 - 230928 + | hypothetical protein TERM 392 230999 - 231034 + T 84 -4.8 -5.79588 | opp_overlap 231009, overlap 231009 231029 TTTAAGTTATTAATA ATAAAAAAAATCGTGG AAAA CCACGATTTTTTAAAA TTTTTTTAATTTTAC TERM 393 231024 - 231009 - T 100 -9 -6.22691 | opp_overlap 231009 230999 TAATAATAAAAAAAA TCGTGG AAAA CCACGA TTTTTTAAAATTTTT TERM 394 231009 - 231024 + T 100 -9 -5.16472 | opp_overlap 231009, overlap 230999 TAATAATAAAAAAAA TCGTGG AAAA CCACGA TTTTTTAAAATTTTT pssA 231550 - 231029 - | CDP-diacylglycerol--serine O-phosphatidyltransferase TERM 395 231322 - 231312 - G 71 -6.8 -3.97108 | AAGGTTAAAATAGAA GGTG CTA CACC AAAAGAAACTAAATC CLI_0264 231737 - 232153 + | CBS domain-containing protein TERM 396 232193 - 232163 - f 70 -7 -3.68036 | opp_overlap 232163, overlap 232161 AATTAGGTTAAAATA TCCACAGGATTT ATTGTTA AAATCTTGTGGA TTTGCTATTATATAA TERM 397 232163 - 232193 + F 86 -9.2 -3.99275 | opp_overlap 232161 232163 AATTAGGTTAAAATA TCCACAGGATTT ATTGTTA AAATCTTGTGGA TTTGCTATTATATAA TERM 398 233077 - 233121 + G 81 -9.5 -3.66658 | overlap 233075 AGATGGAGAAAGAGG TCCAGACTTTCCTTTGCAGAT AGA ATGTGTAAAAGAAGGTTTGGA TATTTTGGGCATATT CLI_0265 232259 - 233143 + | putative lipid kinase CLI_0266 233217 - 233861 + | hypothetical protein TERM 399 233915 - 233863 - T 95 -10 -4.28791 | gap 1, opp_overlap 233863 233874 233875 233910 233914, overlap 233865 233867 AATTGATAAGATAAA CAGAGTTCTAAGCTTCAGAGGGAGT TTTT ACTCCCTCTGAAGCTTATTAA-CAG AATTCTTAGGAGTTT TERM 400 233915 - 233865 - T 95 -12.1 -3.73486 | gap 1, opp_overlap 233863 233874 233875 233910 233914, overlap 233863 233867 TTGATAAGATAAACA GAGTT-CTAAGCTTCAGAGGGAGT TTTT ACTCCCTCTGAAGCTTATTAACAG AATTCTTAGGAGTTT TERM 401 233913 - 233867 - T 100 -19.1 -3.43947 | gap 1, opp_overlap 233863 233874 233875 233910, overlap 233863 233865 GATAAGATAAACAGA GTT-CTAAGCTTCAGAGGGAGT TTTT ACTCCCTCTGAAGCTTATTAAC AGAATTCTTAGGAGT TERM 402 233874 - 233905 + T 100 -21.8 -3.62522 | opp_overlap 233867 233863 233865, overlap 233863 233875 TAAACAGAGTTCTAA GCTTCAGAGGGAGT TTTT ACTCCCTCTGAAGC TTATTAACAGAATTC TERM 403 233910 - 233949 + T 73 -8.8 -2.90615 | gap 1, opp_overlap 233867 233863 233865 233918, overlap 233863 233914 233915 233917 CCCTCTGAAGCTTAT TAACAGAATTCTTAGGAGT TTT ACTCCTTAGAAGTC-GTTA TCCTTTAGGGGAAAT TERM 404 233915 - 233945 + T 79 -9.8 -2.75769 | opp_overlap 233918, overlap 233863 233914 233910 233917 TGAAGCTTATTAACA GAATTCTTAGGAGT TTT ACTCCTTAGAAGTC GTTATCCTTTAGGGG TERM 405 233942 - 233918 - T 90 -10.1 -3.71552 | opp_overlap 233917 233915 233914 233910 AGCTTATTAACAGAA TTCTTAGGAGT TTT ACTCCTTAGAA GTCGTTATCCTTTAG TERM 406 234109 - 234141 + T 90 -6.5 -5.71983 | opp_overlap 234114 ATTTAATAATATATA AAAAATAAACAGC ACTAGAG GCTGTTTATTTTC TTTTTTTGTGCTTAG TERM 407 234136 - 234114 - T 88 -6.4 -5.48787 | opp_overlap 234109 ATAATATATAAAAAA TAAACAGC ACTAGAG GCTGTTTA TTTTCTTTTTTTGTG CLI_0267 236071 - 234134 - | hypothetical protein TERM 408 236480 - 236494 + H 78 -4.2 -5.54907 | TTAGTTATGGATAGG GAGCTT AGT GGGCTC TTTTTGTTTTGTAAA CLI_0268 236666 - 237931 + | PRC-barrel domain/MgtE domain/CBS domain-containing protein TERM 409 237998 - 238035 + F 100 -18.9 -6.09196 | opp_overlap 237998 AACAAATATAAAAAA CACATGTAATAAACTTA TGGA TAAGTTTATTACATGTG TTTTTTTATTTTCAA TERM 410 238035 - 237998 - f 100 -18.9 -5.61913 | opp_overlap 237998 AACAAATATAAAAAA CACATGTAATAAACTTA TGGA TAAGTTTATTACATGTG TTTTTTTATTTTCAA sleB 238156 - 238851 + | spore-cortex-lytic enzyme TERM 411 239175 - 239142 - f 72 -8.3 -3.2661 | opp_overlap 239133 239144, overlap 239140 239144 GAACCACGGAGAATA TACTTCGTCTCTATA TTTT TATAGAGATGAAGTT TTTTTATATTAAGTT TERM 412 239144 - 239173 + F 100 -13.1 -5.80817 | opp_overlap 239142 239140 239144, overlap 239133 ACCACGGAGAATATA CTTCGTCTCTATA TTTT TATAGAGATGAAG TTTTTTTATATTAAG TERM 413 239173 - 239144 - f 90 -10.9 -3.19212 | opp_overlap 239133 239144, overlap 239142 239140 ACCACGGAGAATATA CTTCGTCTCTATA TTTT TATAGAGATGAAG TTTTTTTATATTAAG cysK-1 239215 - 240129 + | cysteine synthase A cysE 240144 - 240740 + | serine O-acetyltransferase TERM 414 240982 - 240948 - g 93 -10.2 -3.93262 | opp_overlap 240948 240950, overlap 240950 240958 TTTCAATATATGAAA GAGGGAAAAACAATAA TTT CTATTGCTTTTCCCTA TTTATTTAATTTAGG TERM 415 240948 - 240982 + G 81 -7.3 -4.62772 | opp_overlap 240948 240950 240958, overlap 240950 TTTCAATATATGAAA GAGGGAAAAACAATA ATTTC TATTGCTTTTCCCTA TTTATTTAATTTAGG TERM 416 240950 - 240980 + G 90 -9.9 -3.91294 | opp_overlap 240948 240950 240958, overlap 240948 TCAATATATGAAAGA GGGAAAAACAATA ATTTC TATTGCTTTTCCC TATTTATTTAATTTA TERM 417 240980 - 240950 - g 100 -12.8 -3.55205 | opp_overlap 240950 240948, overlap 240948 240958 TCAATATATGAAAGA GGGAAAAACAATAA TTT CTATTGCTTTTCCC TATTTATTTAATTTA TERM 418 241594 - 241582 - g 74 -7.7 -3.76387 | AAAAATATAAACTAA CATCC TGT GGATG GAGAGGAAAGAGTAT CLI_0272 240762 - 241727 + | iron-sulfur cluster-binding protein CLI_0273 241875 - 242576 + | 1-acyl-sn-glycerol-3-phosphate acyltransferase family protein TERM 419 243084 - 243062 - g 72 -7.8 -3.55622 | GCCAATGCTTTTAAA GTACCTACTA TAG CAGTAGATAC CCATGTTTTTAGAGT TERM 420 243282 - 243272 - g 81 -2.6 -5.67063 | opp_overlap 243272 TGTACTATAAAAAAA TATT GCA AATA TTATAATGAAGAGAT nth 242669 - 243310 + | endonuclease III TERM 421 243372 - 243389 + F 76 -2.7 -5.91981 | opp_overlap 243373, overlap 243373 GTTTTGCTATTAAAG ATATCCA CATG TGGATAA TTTTTTTTAGATTTT TERM 422 243425 - 243456 + F 95 -11.6 -3.62522 | opp_overlap 243418, overlap 243426 TAAACAGAGTTCTTG GCTTCAGAGGGAGT TTTT ACTCCCACTAAAGC TTATTAACAGACTTC TERM 423 243461 - 243500 + F 79 -8.8 -3.63922 | gap 1, opp_overlap 243418 243464 243466, overlap 243465 243466 CCCACTAAAGCTTAT TAACAGACTTCTTAAGAGT TTT ACTCCTTAGAAGTC-GTTA TCTTTTAGGGGAAAT TERM 424 243497 - 243464 - f 72 -8.3 -3.20747 | gap 1, opp_overlap 243461 243465 243466, overlap 243466 ACTAAAGCTTATTAA CAGACTTCTTAAGAGT TTT ACTCCTTAGAAGTC-G TTATCTTTTAGGGGA TERM 425 243466 - 243496 + F 82 -9.8 -2.96779 | opp_overlap 243464 243466, overlap 243465 243461 TAAAGCTTATTAACA GACTTCTTAAGAGT TTT ACTCCTTAGAAGTC GTTATCTTTTAGGGG TERM 426 243496 - 243466 - f 93 -12 -3.16288 | opp_overlap 243466 243465 243461, overlap 243464 TAAAGCTTATTAACA GACTTCTTAAGAGT TTT ACTCCTTAGAAGTC GTTATCTTTTAGGGG TERM 427 243530 - 243582 + F 70 -7.2 -3.69283 | gap 2, overlap 243531 243533 TCGTTATCCAGGGAC GTAGCCGCTCT-TTACTCCCA-CTTT GAA GAAGATGGGAGTATTAGAGCGGGTAG TTATTGGATAAATTA TERM 428 243531 - 243581 + F 82 -10.7 -2.81088 | gap 2, overlap 243530 243533 CGTTATCCAGGGACG TAGCCGCTCT-TTACTCCCA-CTTT GAA GAAGATGGGAGTATTAGAGCGGGTA GTTATTGGATAAATT TERM 429 243533 - 243579 + F 74 -8.9 -2.94872 | gap 2, overlap 243531 243530 TTATCCAGGGACGTA GCCGCTCT-TTACTCCCA-CTTT GAA GAAGATGGGAGTATTAGAGCGGG TAGTTATTGGATAAA CLI_0275 243643 - 244815 + | malic enzyme TERM 430 244811 - 244851 + T 100 -16.5 -4.44667 | opp_overlap 244813 244818, overlap 244812 244813 244818 TGGGATTATCAAAAT TATAAAATAAGGAAGTTGC GTA GCAACTTCCTTATTTTAAG TTTCTTCTTAAAAAG TERM 431 244812 - 244850 + T 100 -17.8 -3.26318 | opp_overlap 244813 244818, overlap 244811 244813 244818 GGGATTATCAAAATT ATAAAATAAGGAAGTTGC GTA GCAACTTCCTTATTTTAA GTTTCTTCTTAAAAA TERM 432 244813 - 244849 + T 100 -21.3 -2.55309 | opp_overlap 244813 244818, overlap 244812 244811 244818 GGATTATCAAAATTA TAAAATAAGGAAGTTGC GTA GCAACTTCCTTATTTTA AGTTTCTTCTTAAAA TERM 433 244849 - 244813 - T 100 -21.3 -3.14962 | opp_overlap 244812 244811 244813 244818, overlap 244818 GGATTATCAAAATTA TAAAATAAGGAAGTTGC GTA GCAACTTCCTTATTTTA AGTTTCTTCTTAAAA TERM 434 244818 - 244844 + T 100 -16.8 -4.43755 | opp_overlap 244818 244813, overlap 244813 244812 244811 ATCAAAATTATAAAA TAAGGAAGTTGC GTA GCAACTTCCTTA TTTTAAGTTTCTTCT TERM 435 244844 - 244818 - T 100 -16.8 -4.68539 | opp_overlap 244813 244812 244811 244818, overlap 244813 ATCAAAATTATAAAA TAAGGAAGTTGC GTA GCAACTTCCTTA TTTTAAGTTTCTTCT CLI_0276 246071 - 244842 - | competence damage-inducible protein A CLI_0277 247080 - 246097 - | hypothetical protein CLI_0278 248224 - 247190 - | glutamyl aminopeptidase family protein TERM 436 247326 - 247312 - G 73 -8.6 -3.2032 | opp_overlap 247293, overlap 247292 247311 CTTTTATATCAAAAC CTGCTT TTA AAGCAG CACTTGCATCAGATC CLI_0279 248376 - 249512 + | vanW-like family protein TERM 437 249556 - 249598 + F 100 -13.1 -4.4017 | opp_overlap 249556 249559 249560, overlap 249560 TTTAAGTTTTTAGAA TAAGCCCTCTTAAAATAGA TTAAT TTTATTTTGAGAGGGTTTA TTTTATACAAATTAA TERM 438 249560 - 249594 + F 100 -11.7 -4.77173 | opp_overlap 249559 249556 249560, overlap 249556 AGTTTTTAGAATAAG CCCTCTTAAAATAGA TTAAT TTTATTTTGAGAGGG TTTATTTTATACAAA TERM 439 250853 - 250831 - g 72 -4.2 -5.0133 | TAGTTCCTTAAAAAA CAAAACATAT AAT ATAAGTTCTG AAATATATGAAACTA CLI_0280 249716 - 251068 + | vanW-like family protein TERM 440 251190 - 251217 + F 79 -8.6 -4.15044 | opp_overlap 251189 TTTAGAAATAAATTG CATACTATAACT AAGG AGTGATAGTATG TTTATTCCCAAAACA TERM 441 251973 - 251961 - g 75 -4.9 -5.17353 | opp_overlap 251961 AGATTTATTAAAAAA CATAA ATA TTATG TTTAAAGGTGTTCCC splB 251215 - 252222 + | spore photoproduct lyase TERM 442 252250 - 252218 - f 83 -10.9 -2.71204 | opp_overlap 252218 252224, overlap 252210 252224 252227 ACATTAACTACATTA TATAGAGAATTAACA TTT TGTTAATTCTTTATA TTCTTTACTAAAGCT TERM 443 252218 - 252250 + F 100 -13.1 -4.0031 | opp_overlap 252210 252218 252224 252227, overlap 252224 ACATTAACTACATTA TATAGAGAATTAACA TTT TGTTAATTCTTTATA TTCTTTACTAAAGCT TERM 444 252244 - 252224 - f 82 -9.9 -3.04537 | opp_overlap 252218 252224, overlap 252218 252227 ACTACATTATATAGA GAATTAACA TTT TGTTAATTC TTTATATTCTTTACT TERM 445 252224 - 252244 + F 100 -9.9 -4.41237 | opp_overlap 252224 252218 252227, overlap 252218 ACTACATTATATAGA GAATTAACA TTT TGTTAATTC TTTATATTCTTTACT CLI_0282 252350 - 252817 + | hypothetical protein TERM 446 253008 - 252994 - g 70 -4.3 -4.91977 | opp_overlap 253003, overlap 253000 TACTAAAATAGAAAA GGAAA ATGTG TTTCC ACAAACTTCTCAAGT CLI_0283 252830 - 253669 + | DegV family protein TERM 447 253685 - 253711 + F 73 -7.4 -4.1023 | TAAAATACTTTTCAA GCTATATTTCGA TCA TAGAGATATAGC TTATTATTTAAAATT CLI_0284 253963 - 255066 + | Bmp family lipoprotein TERM 448 255089 - 255142 + F 90 -10.8 -3.44267 | gap 1, opp_overlap 255080 255094 255095 255104 255139, overlap 255080 255095 255104 255139 AGATGATATTAGGAA TATAATG-TTATAAAAGCTAGATGT ACTTA ACATCTAGCTTTTATAAGCTATATA TATTATAATTTTATT TERM 449 255136 - 255094 - f 95 -10.9 -3.73144 | opp_overlap 255089 255095 255104, overlap 255095 255104 ATATTAGGAATATAA TGTTATAAAAGCTAGATGT ACTTA ACATCTAGCTTTTATAAGC TATATATATTATAAT TERM 450 255135 - 255095 - f 100 -14.4 -2.83163 | opp_overlap 255089 255095 255104, overlap 255094 255104 TATTAGGAATATAAT GTTATAAAAGCTAGATGT ACTTA ACATCTAGCTTTTATAAG CTATATATATTATAA TERM 451 255095 - 255136 + F 100 -14.2 -3.13593 | gap 1, opp_overlap 255095 255094 255104, overlap 255089 255104 TATTAGGAATATAAT G-TTATAAAAGCTAGATGT ACTTA ACATCTAGCTTTTATAAGC TATATATATTATAAT TERM 452 255126 - 255104 - f 100 -10.7 -4.43859 | opp_overlap 255095 255089 255104, overlap 255095 255094 TATAATGTTATAAAA GCTAGATGT ACTTA ACATCTAGC TTTTATAAGCTATAT TERM 453 255104 - 255126 + F 100 -10.7 -4.4195 | opp_overlap 255104 255095 255094, overlap 255095 255089 TATAATGTTATAAAA GCTAGATGT ACTTA ACATCTAGC TTTTATAAGCTATAT CLI_0285 255249 - 256781 + | putative sugar ABC transporter, ATP-binding protein CLI_0286 256783 - 257886 + | putative sugar ABC transporter, permease protein CLI_0287 257879 - 258805 + | putative sugar ABC transporter, permease protein TERM 454 258811 - 258838 + F 100 -10 -5.93252 | opp_overlap 258811, overlap 258812 TAGTAGATAACTTAA TGGAGTTAGAAA GAGA TTTCTAGCTCCG TTTTTTATTTTTGAA TERM 455 258812 - 258837 + F 100 -11.3 -4.13511 | opp_overlap 258811, overlap 258811 AGTAGATAACTTAAT GGAGTTAGAAA GAGA TTTCTAGCTCC GTTTTTTATTTTTGA CLI_0288 258917 - 259642 + | polysaccharide deacetylase family protein TERM 456 259661 - 259689 + F 70 -4 -5.1167 | gap 1, opp_overlap 259661 ATTATAAGTAAAAAA GAGGCCATT-TTA TATT TAATAATGGGCTC TTTTTATATTGGATT TERM 457 259689 - 259661 - f 72 -4 -5.33848 | gap 1, opp_overlap 259661 ATTATAAGTAAAAAA GAGGCCATT-TTA TATT TAATAATGGGCTC TTTTTATATTGGATT TERM 458 259786 - 259766 - f 71 -6.9 -4.15061 | GAATGCATACATAAA GTTATCAAC AAT GTGGATAAC AAAAGAGTGACAATA rpoN 259980 - 261353 + | RNA polymerase factor sigma-54 TERM 459 261356 - 261378 + F 83 -3.5 -5.99154 | opp_overlap 261356 AAAGCGTTTTTAAAA GCATGAT TTATAGATT ATCATGC TTTTTTTATTTAATA TERM 460 261533 - 261512 - f 100 -7.5 -5.58209 | opp_overlap 261512 261513 TTAAATTTAAAAAAA TTTTTTGAA AAAT TTCAAAAAA ACCCTTTAAAAGTAG cggR 261641 - 262672 + | central glycolytic genes regulator gap-1 262750 - 263757 + | glyceraldehyde-3-phosphate dehydrogenase, type I pgk 264054 - 265250 + | phosphoglycerate kinase tpiA 265312 - 266058 + | triosephosphate isomerase gpmI 266150 - 267679 + | phosphoglyceromutase eno 267735 - 269030 + | phosphopyruvate hydratase TERM 461 269047 - 269071 + F 100 -11.5 -3.88498 | opp_overlap 269046 269043 269047 AATTCTTAAAACAAG GGACTGCTCAT AGT ATGGGTAGTCC TTTAATCTATAAAAA secG 269254 - 269487 + | preprotein translocase, SecG subunit TERM 462 269515 - 269544 + F 73 -3.1 -5.61596 | gap 1 AAGTATGAATTTAAT TAGCTGTTTAAT GTGAATA ATT-AACAGCTA TTTTTTTATAAAAAT TERM 463 269546 - 269569 + F 77 -7 -4.50193 | ATAATTAACAGCTAT TTTTTTATAA AAAT TTATAAAAAA TTTTAATTAATTAGT rnr 269697 - 271874 + | ribonuclease R TERM 464 271930 - 271886 - f 72 -8.2 -3.25567 | gap 1, opp_overlap 271884 271888 271891 271897 271924, overlap 271884 ATAGGTTAAAAATTA TTTAAGAGAAACTCAG-TTTA AAGT TAATGCTGAGTTTCTCTTATA AGTTTTAAAAGATAT TERM 465 271888 - 271928 + F 90 -13 -2.74784 | gap 1, opp_overlap 271886 271884, overlap 271884 271891 271897 271924 AGGTTAAAAATTATT TAAGAGAAACTCAGT-TTA AAGT TAATGCTGAGTTTCTCTTA TAAGTTTTAAAAGAT TERM 466 271891 - 271925 + F 91 -10.3 -3.52113 | gap 1, opp_overlap 271886 271884, overlap 271888 271884 271897 271924 TTAAAAATTATTTAA GAGAAACTCAGT-TTA AAGT TAATGCTGAGTTTCTC TTATAAGTTTTAAAA surE 272283 - 273041 + | acid phosphatase SurE smpB 273298 - 273768 + | SsrA-binding protein TERM 467 274230 - 274177 - T 100 -13.3 -3.28924 | opp_overlap 274178 274181 274182, overlap 274180 TACGTCTCTGGATAA CCATTTTCTAAGCTTTAGTGGGAGT AAAA ACTCCCTCTAAAGCTTAGAACTCTG TTTATAAATTCTTCT TERM 468 274178 - 274230 + T 100 -13 -4.02856 | gap 1, opp_overlap 274177 274180, overlap 274181 274182 ACGTCTCTGGATAAC CA-TTTTCTAAGCTTTAGTGGGAGT AAAA ACTCCCTCTAAAGCTTAGAACTCTG TTTATAAATTCTTCT TERM 469 274227 - 274180 - T 100 -15.8 -2.82623 | opp_overlap 274178 274181 274182, overlap 274177 GTCTCTGGATAACCA TTTTCTAAGCTTTAGTGGGAGT AAAA ACTCCCTCTAAAGCTTAGAACT CTGTTTATAAATTCT TERM 470 274181 - 274226 + T 100 -19.3 -3.36059 | opp_overlap 274180 274177, overlap 274178 274182 TCTCTGGATAACCAT TTTCTAAGCTTTAGTGGGAGT AAAA ACTCCCTCTAAAGCTTAGAAC TCTGTTTATAAATTC TERM 471 274182 - 274225 + T 100 -22.8 -2.60913 | opp_overlap 274180 274177, overlap 274181 274178 CTCTGGATAACCATT TTCTAAGCTTTAGTGGGAGT AAAA ACTCCCTCTAAAGCTTAGAA CTCTGTTTATAAATT CLI_0300 275395 - 274232 - | sodium:dicarboxylate symporter family protein TERM 472 274601 - 274615 + g 70 -3.6 -5.03747 | opp_overlap 274596, overlap 274598 ATCCACAATATCTTC TCTAAG AAC TTTAGA TTTTTTAGCGGATTT TERM 473 275468 - 275453 - H 73 -3.4 -5.54079 | opp_overlap 275453 275448, overlap 275446 GGAAAAACTAAAAAA TTTAAT CAGT ATTAAA TTTTATTTTAGTGTT TERM 474 275550 - 275524 - H 100 -7.3 -6.28401 | opp_overlap 275524 TAAAAAATAAAAAAA CTCCTACCTCC TATAC AGAGGCAGAAG TTATATTCCGCGGTT TERM 475 276565 - 276604 + H 93 -10.2 -4.13648 | opp_overlap 276570 276571, overlap 276570 276571 CCTCGCCTCCACCAT GAAAACCTCGACAATACA GAAA TGTGTTGTCGAGATTTTA TTTATATATAGAATT TERM 476 276570 - 276599 + H 100 -10.1 -5.07523 | opp_overlap 276570 276571, overlap 276565 276571 CCTCCACCATGAAAA CCTCGACAATACA GAAA TGTGTTGTCGAGA TTTTATTTATATATA TERM 477 276599 - 276570 - H 95 -10.1 -4.30576 | opp_overlap 276570 276565 276571, overlap 276571 CCTCCACCATGAAAA CCTCGACAATACA GAAA TGTGTTGTCGAGA TTTTATTTATATATA TERM 478 276571 - 276598 + H 100 -13.6 -3.62887 | opp_overlap 276570 276571, overlap 276570 276565 CTCCACCATGAAAAC CTCGACAATACA GAAA TGTGTTGTCGAG ATTTTATTTATATAT TERM 479 276598 - 276571 - H 90 -11.4 -3.18024 | opp_overlap 276571 276570 276565, overlap 276570 CTCCACCATGAAAAC CTCGACAATACA GAAA TGTGTTGTCGAG ATTTTATTTATATAT CLI_0301 276781 - 277284 + | MepB family protein TERM 480 277567 - 277546 - T 100 -8.7 -5.5112 | opp_overlap 277546 277564 TCCACCAATAAAAAA CCCATCACA GATT TGTGGTGGG TTTTACCTATTTTAC TERM 481 277546 - 277567 + T 100 -10.9 -4.35581 | opp_overlap 277546, overlap 277564 TCCACCAATAAAAAA CCCATCACA GATT TGTGGTGGG TTTTACCTATTTTAC CLI_0302 277984 - 277574 - | hypothetical protein TERM 482 278164 - 278186 + H 100 -10.6 -6.07374 | opp_overlap 278164 278165, overlap 278165 GCCTCCACCATGAAA TCCACGACAG TGA TTGTCGTGGG TTTTTTATTTTTTAT TERM 483 278186 - 278164 - H 73 -7.7 -3.78775 | opp_overlap 278164 278165, overlap 278165 GCCTCCACCATGAAA TCCACGACA GTGAT TGTCGTGGG TTTTTTATTTTTTAT TERM 484 278165 - 278185 + H 100 -11.9 -4.18934 | opp_overlap 278164 278165, overlap 278164 CCTCCACCATGAAAT CCACGACAG TGA TTGTCGTGG GTTTTTTATTTTTTA TERM 485 278185 - 278165 - H 85 -11.2 -2.87051 | opp_overlap 278165 278164, overlap 278164 CCTCCACCATGAAAT CCACGACA GTGAT TGTCGTGG GTTTTTTATTTTTTA TERM 486 279481 - 279468 - g 77 -8.1 -3.85698 | opp_overlap 279467 TCGTTTGGGTAGAAA GGCTC AGAC GAGCC ATGTTAAAATATGTG CLI_0303 278333 - 279664 + | FAD-binding protein TERM 487 279826 - 279806 - f 100 -7.6 -5.5112 | gap 1, opp_overlap 279807, overlap 279807 TCCACCAATAAAAAA CCCACCACA GATT TGTGG-GGG TTTTTCACGTTTGTA TERM 488 279826 - 279807 - f 75 -7.8 -3.89587 | opp_overlap 279807, overlap 279806 CCACCAATAAAAAAC CCACCACA GATT TGTGGGGG TTTTTCACGTTTGTA TERM 489 279807 - 279826 + F 83 -7.8 -4.72486 | opp_overlap 279806 279807 CCACCAATAAAAAAC CCACCACA GATT TGTGGGGG TTTTTCACGTTTGTA TERM 490 279867 - 279855 - f 70 -6.3 -4.21768 | TAAGGAAGTTTAAAA TCACT GAA AGTGA ACCATTTCTATTTCA CLI_0304 280160 - 280936 + | putative methyltransferase CLI_0305 280973 - 281599 + | cyclic nucleotide-binding protein TERM 491 281693 - 281716 + F 78 -6.8 -4.81212 | opp_overlap 281693 TATAGTTAGAAAACT GAGTATATGC GAAA GTATATGCTC TTTTATTGTAATAAG TERM 492 282888 - 282878 - g 74 -6.8 -4.27617 | overlap 282865 TACATTTGATCAAAA TGCC ACA GGCA GAGATAATTCCAGTG CLI_0307 282570 - 283994 + | putative amino acid decarboxylase TERM 493 284686 - 284672 - g 81 -7.1 -4.59342 | TGCAGGAGAAATAAA GCTCC AGATA GGAGC TAACGAAGGCCAGTT CLI_0308 284232 - 285083 + | flagellin protein TERM 494 285244 - 285265 + F 100 -9.5 -5.47218 | opp_overlap 285244 ACCTCCGCTCAAAAA TCTACGACA GAAA TGTCGTGGA TTTTTTTAGGTGACA TERM 495 285265 - 285244 - f 79 -7.3 -4.56775 | opp_overlap 285244 ACCTCCGCTCAAAAA TCTACGACA GAAA TGTCGTGGA TTTTTTTAGGTGACA TERM 496 286216 - 286192 - g 70 -3.8 -5.0133 | gap 1, overlap 286196 TACCTGTGGAAAAAA TCGATTATATG ACTT CATATAAT-GA ATGGCTCAATATACA CLI_0309 285438 - 287054 + | vanadium-dependent haloperoxidase TERM 497 287165 - 287124 - f 79 -8.9 -3.60323 | opp_overlap 287125 287164, overlap 287122 287125 287164 TATGATTAAATAAGA GGTATGCTTGAAAGTGAAT TTTA AATCAGTTTCAAGCATACT TTTTTACAGTTTGAA TERM 498 287125 - 287164 + F 100 -12.4 -5.12707 | opp_overlap 287124 287122 287125 ATGATTAAATAAGAG GTATGCTTGAAAGTGAAT TTTA AATCAGTTTCAAGCATAC TTTTTTACAGTTTGA TERM 499 287164 - 287125 - f 88 -12.4 -2.75471 | opp_overlap 287125, overlap 287124 287122 ATGATTAAATAAGAG GTATGCTTGAAAGTGAAT TTTA AATCAGTTTCAAGCATAC TTTTTTACAGTTTGA CLI_0310 287553 - 288209 + | hypothetical protein TERM 500 288311 - 288336 + F 83 -6.9 -5.13344 | AAATACATGATTTAG TACCCTGAAGT AGTA ATCTCAGGGTA TTTTTGTATTCATAT CLI_0311 288464 - 289147 + | DNA-binding response regulator TERM 501 289154 - 289188 + F 77 -5.2 -5.40072 | ATATTATGATATTAG GTCAATTGTTTAGA TAAAAAT TCTAAATAGTTGGC TTTTTTTAAAGGGAG CLI_0312 289216 - 290223 + | sensor histidine kinase CLI_0313 290298 - 291062 + | ABC transporter, ATP-binding protein CLI_0314 291049 - 292971 + | efflux ABC transporter, permease protein TERM 502 292990 - 292977 - g 72 -2.5 -5.43866 | opp_overlap 292989, overlap 292988 292989 TAATGCTTAAAAAAA TAATA AAAG TATTA AGAAACATTCTTATT TERM 503 293010 - 293026 + G 70 -8.1 -3.09365 | overlap 293009 ACATTCTTATTGTGA TATTAGC ATT GCTAATA ATTATTTCTATAGTA CLI_0315 292964 - 293935 + | hypothetical protein TERM 504 293995 - 294032 + F 80 -6.3 -5.26907 | opp_overlap 293997, overlap 293997 TTCCCTCCACCATGA AACCCACCACAATACTA ATTA TAGTGTTGCTGTGGGTC TTTTATTTTCTATTC TERM 505 294030 - 293997 - f 79 -8.9 -3.78775 | opp_overlap 293995 293997 CCCTCCACCATGAAA CCCACCACAATACTA ATTA TAGTGTTGCTGTGGG TCTTTTATTTTCTAT TERM 506 293997 - 294030 + F 84 -8.9 -4.22673 | opp_overlap 293997, overlap 293995 CCCTCCACCATGAAA CCCACCACAATACTA ATTA TAGTGTTGCTGTGGG TCTTTTATTTTCTAT CLI_0316 294228 - 295694 + | multicopper oxidase family protein TERM 507 295793 - 295768 - f 73 -7.7 -3.78172 | opp_overlap 295767 295766, overlap 295766 295763 295758 TAAATTAAAAGAACA GGCTAGTTT TTTAGAGG AAACTAGCC CATGTCTTTTATAAA CLI_0317 296056 - 297165 + | hypothetical protein TERM 508 297213 - 297199 - f 73 -2.8 -5.65496 | opp_overlap 297178, overlap 297193 TATCAAAAATAAAAA GCTTTT TAT ATAAGC ATAGAAATATGAAGA TERM 509 297275 - 297302 + F 100 -10.1 -4.81249 | opp_overlap 297275 TAAGTATATTAAAAA TAACAGTTAGT CTATGT ACTAACTGTTA TTTTTCCATTTAAAG TERM 510 297302 - 297275 - f 100 -10.1 -4.84274 | opp_overlap 297275 TAAGTATATTAAAAA TAACAGTTAGT CTATGT ACTAACTGTTA TTTTTCCATTTAAAG TERM 511 297369 - 297391 + F 83 -6.3 -5.37593 | opp_overlap 297371, overlap 297371 GTGTACATTTTCTAA TACCCTGAG TTAAT CTTAGGGTG TTTTTTCATTTAGAA TERM 512 297371 - 297389 + F 73 -6.7 -4.31698 | opp_overlap 297371, overlap 297369 GTACATTTTCTAATA CCCTGAG TTAAT CTTAGGG TGTTTTTTCATTTAG TERM 513 298551 - 298538 - g 72 -6.7 -4.08948 | CAACTCCAGAAATAA TGCCA GATT TGGCA AAGGAAGCAGGGGCT CLI_0318 297667 - 298839 + | malic enzyme TERM 514 298888 - 298927 + F 100 -14.6 -2.90615 | gap 1, opp_overlap 298891 298893, overlap 298892 298893 298895 298895 CCAACTAAAGCTTAT TAACAGACTTCTTAGGAGT TTT ACTCCTTAGAAGTC-GTTA TCCTTTAGGAGAAAT TERM 515 298924 - 298891 - f 93 -11.9 -3.20747 | gap 1, opp_overlap 298888 298892 298893 298895 298895, overlap 298893 ACTAAAGCTTATTAA CAGACTTCTTAGGAGT TTT ACTCCTTAGAAGTC-G TTATCCTTTAGGAGA TERM 516 298892 - 298924 + F 95 -12.1 -3.60151 | opp_overlap 298891 298893, overlap 298888 298893 298895 298895 CTAAAGCTTATTAAC AGACTTCTTAGGAGT TTT ACTCCTTAGAAGTCG TTATCCTTTAGGAGA TERM 517 298893 - 298923 + F 100 -15.6 -2.75769 | opp_overlap 298891 298893, overlap 298892 298888 298895 298895 TAAAGCTTATTAACA GACTTCTTAGGAGT TTT ACTCCTTAGAAGTC GTTATCCTTTAGGAG TERM 518 298923 - 298893 - f 100 -15.6 -3.16288 | opp_overlap 298893 298892 298888 298895 298895, overlap 298891 TAAAGCTTATTAACA GACTTCTTAGGAGT TTT ACTCCTTAGAAGTC GTTATCCTTTAGGAG TERM 519 298895 - 298921 + F 89 -12.4 -2.92144 | opp_overlap 298893 298891, overlap 298893 298892 298888 298895 AAGCTTATTAACAGA CTTCTTAGGAGT TTT ACTCCTTAGAAG TCGTTATCCTTTAGG TERM 520 299005 - 298961 - f 71 -8.1 -3.08133 | gap 2 TATCCAGGGACGTAA CCGCTCT-TTACTCCCA-CTT TGAAG AAGATGAGAGTATTAGAGCGG GTAGTCATCGGATAA kdgT 299051 - 300025 + | 2-keto-3-deoxygluconate permease TERM 521 300178 - 300188 + F 70 -4 -5.13344 | opp_overlap 300169 300178 ACTATATAATAAGAT TAGA ATA TCTA TTTTTATATTAATCT CLI_0320 300296 - 301918 + | putative sensor histidine kinase CLI_0321 301896 - 302570 + | response regulator TERM 522 302743 - 302773 + F 71 -7.2 -3.85184 | opp_overlap 302748, overlap 302748 TATAAGGGTTATGTG AAAAATTTTTTAAA GCT TTTAAAAAATTTTG TTTACATATTTTAAA TERM 523 302748 - 302768 + F 83 -7.1 -4.93288 | opp_overlap 302748, overlap 302743 GGGTTATGTGAAAAA TTTTTTAAA GCT TTTAAAAAA TTTTGTTTACATATT TERM 524 302768 - 302748 - f 79 -7.1 -4.62069 | opp_overlap 302748 302743 GGGTTATGTGAAAAA TTTTTTAAA GCT TTTAAAAAA TTTTGTTTACATATT TERM 525 303042 - 303064 + F 100 -13.6 -5.67967 | opp_overlap 303042 AATACATGATTTAAA TATCCTGAGA TAG TCTCAGGATA TTTTTTTATGCTCGT TERM 526 303064 - 303042 - f 100 -13.6 -3.71265 | opp_overlap 303042 AATACATGATTTAAA TATCCTGAGA TAG TCTCAGGATA TTTTTTTATGCTCGT TERM 527 303359 - 303369 + G 71 -6.8 -3.9243 | opp_overlap 303346, overlap 303346 ATGGCAACCTTTATG CCTG TAT CAGG TTCTTTCGAAACTTA lysP 303128 - 304591 + | lysine-specific permease TERM 528 304635 - 304599 - f 100 -18.4 -4.66537 | opp_overlap 304599 304605 TTGTTTAAGATAAAA TATAAAGACTGCTGAT ATTTA ATCAGCAGTCTTTATA TTTATTAGGTGATAG TERM 529 304599 - 304635 + F 100 -18.4 -4.21974 | opp_overlap 304599, overlap 304605 TTGTTTAAGATAAAA TATAAAGACTGCTGAT ATTTA ATCAGCAGTCTTTATA TTTATTAGGTGATAG TERM 530 304605 - 304629 + F 100 -13 -4.46072 | opp_overlap 304599, overlap 304599 AAGATAAAATATAAA GACTGCTGAT ATTTA ATCAGCAGTC TTTATATTTATTAGG TERM 531 304859 - 304883 + F 75 -8.7 -3.24386 | opp_overlap 304864, overlap 304860 304864 TAGTTTGAAATGCTT TTAAAGTTCCA TAA TGGAGCTTTAG TTAATGATGCATTTT TERM 532 304860 - 304882 + F 78 -10 -2.53908 | opp_overlap 304864, overlap 304859 304864 AGTTTGAAATGCTTT TAAAGTTCCA TAA TGGAGCTTTA GTTAATGATGCATTT TERM 533 305065 - 305100 + F 100 -19.3 -4.76874 | opp_overlap 305065 TGTTTATATAAACAA GATCCCCATAGATGA TATTGT TCATCTATGGGGATC TTTTAATTTTATATT TERM 534 305100 - 305065 - f 100 -19.3 -4.14627 | opp_overlap 305065 TGTTTATATAAACAA GATCCCCATAGATGA TATTGT TCATCTATGGGGATC TTTTAATTTTATATT TERM 535 305537 - 305521 - g 71 -3 -5.23765 | overlap 305530 TAAAGAATATAAAAA CCTTCA AGATA TAAAGG TTATACCTGCTGATA CLI_0323 305135 - 305869 + | metallo-beta-lactamase family protein CLI_0324 306010 - 306648 + | streptogramin A acetyltransferase CLI_0325 306687 - 307199 + | acetyltransferase TERM 536 307489 - 307475 - g 71 -8.6 -2.84566 | overlap 307464 307472 AAGATGGTACAATCA TTCCAC CAT GTGGAA GATGTAGAGAATTTA CLI_0326 307225 - 307602 + | cytidine/deoxycytidylate deaminase family protein CLI_0327 307772 - 308674 + | acetyltransferase CLI_0328 308700 - 309224 + | riboflavin biosynthesis protein RibD domain-containing protein CLI_0329 309287 - 310216 + | DNA polymerase III subunit epsilon TERM 537 310486 - 310529 + T 75 -6.4 -4.46212 | gap 2, opp_overlap 310498, overlap 310479 TAGTACATTTTGAAG TGCACCT-CA-AAGTTTAGA CAAAAA TCTAAATTTGTGGAGGTGCA TTTTCTGGTAAAAAG CLI_0330 311391 - 310717 - | isochorismate family protein CLI_0331 311659 - 313989 + | xanthine dehydrogenase family protein, molybdopterin-binding subunit CLI_0332 313989 - 314828 + | xanthine dehydrogenase family protein, FAD-binding subunit CLI_0333 314825 - 315298 + | xanthine dehydrogenase family protein, iron-sulfur-binding subunit TERM 538 315386 - 315417 + F 100 -7.3 -6.07374 | CTGTAAAAGAATGTT TCCACGCGGATGA CATTGT TCATCTGTGGGGA TTTTTTGTTTTTTGT TERM 539 315684 - 315668 - g 85 -8.1 -4.63527 | CTATGAGGGTAAAAA TCCTAAT AAT ATTAGGA GCAAGTATACTAATT CLI_0334 315655 - 316125 + | hypothetical protein CLI_0335 316136 - 316819 + | putative cytochrome c-type biogenesis protein CcdA CLI_0336 316841 - 317407 + | putative thiol-disulfide oxidoreductase ResA CLI_0337 317432 - 318109 + | DNA-binding response regulator CLI_0338 318081 - 319499 + | sensor histidine kinase TERM 540 319665 - 319619 - T 90 -7.5 -5.06089 | opp_overlap 319620 319621, overlap 319620 319621 AAATGATAAAGAAAA GTTTGAGCAGATTCATTTTTG TATAC CAAAAGTGAATCTACTCAAGT TGTACAAGGAGTTAT TERM 541 319620 - 319664 + T 100 -13.2 -3.29461 | opp_overlap 319620 319619 319621, overlap 319621 AATGATAAAGAAAAG TTTGAGCAGATTCATTTTTG TATAC CAAAAGTGAATCTACTCAAG TTGTACAAGGAGTTA TERM 542 319664 - 319620 - T 95 -11 -3.61213 | opp_overlap 319620 319621, overlap 319619 319621 AATGATAAAGAAAAG TTTGAGCAGATTCATTTTTG TATAC CAAAAGTGAATCTACTCAAG TTGTACAAGGAGTTA TERM 543 319621 - 319663 + T 100 -14.5 -2.57463 | opp_overlap 319621 319620 319619, overlap 319620 ATGATAAAGAAAAGT TTGAGCAGATTCATTTTTG TATAC CAAAAGTGAATCTACTCAA GTTGTACAAGGAGTT TERM 544 319663 - 319621 - T 100 -14.5 -2.75101 | opp_overlap 319620 319621, overlap 319620 319619 ATGATAAAGAAAAGT TTGAGCAGATTCATTTTTG TATAC CAAAAGTGAATCTACTCAA GTTGTACAAGGAGTT CLI_0339 321023 - 319710 - | putative oxidoreductase, FAD-binding glvA-1 321344 - 322669 + | maltose-6'-phosphate glucosidase TERM 545 323522 - 323544 + G 74 -7.8 -3.73402 | opp_overlap 323526, overlap 323538 TGATTCCTACTGGAC TACACCATGT TTT AAATGGTGTA TTTCGTACAACATCT CLI_0341 322837 - 324360 + | PTS system, maltose/glucose-specfic, IIBC component TERM 546 324379 - 324399 + T 78 -6.9 -4.84359 | opp_overlap 324379 ATATAAATATAAAAA TAGCAACTT AAA ATGTTGCTA TTTTTATAAAACTAA TERM 547 324399 - 324379 - T 83 -6.9 -5.26155 | opp_overlap 324379 ATATAAATATAAAAA TAGCAACTT AAA ATGTTGCTA TTTTTATAAAACTAA CLI_0342 325178 - 324411 - | RpiR family transcriptional regulator CLI_0343 325973 - 325194 - | RpiR family transcriptional regulator TERM 548 326419 - 326403 - g 76 -6.6 -4.39889 | opp_overlap 326402 ACAAGTATAGTAAAA TCACCA GCAGA TGGTGA AATTATAGTAGTTAT CLI_0344 326247 - 326729 + | PTS system, glucose family, EIIA component TERM 549 326792 - 326818 + G 100 -11 -5.0916 | opp_overlap 326774 326790 326793, overlap 326774 326793 ATTTTGTTCATAATT ACTCCTCTAAAT TTT ATTTAGAGGAGA TTTTTCTATTCAGAA TERM 550 326793 - 326817 + G 100 -14.5 -3.64773 | opp_overlap 326790 326793, overlap 326792 TTTTGTTCATAATTA CTCCTCTAAAT TTT ATTTAGAGGAG ATTTTTCTATTCAGA TERM 551 326817 - 326793 - g 100 -14.5 -2.82623 | opp_overlap 326793 326792, overlap 326790 TTTTGTTCATAATTA CTCCTCTAAAT TTT ATTTAGAGGAG ATTTTTCTATTCAGA CLI_0345 326737 - 327603 + | DNA-binding response regulator CLI_0346 327613 - 328662 + | sensor histidine kinase TERM 552 328697 - 328724 + F 76 -2.8 -5.9873 | opp_overlap 328699, overlap 328699 TAATAGCCAAAATGA AAGAGAAATC AATACAAA GATTTCTCTA TTTTTTTTATAATAA TERM 553 328699 - 328722 + F 71 -5.4 -4.6341 | opp_overlap 328699, overlap 328697 ATAGCCAAAATGAAA GAGAAATC AATACAAA GATTTCTC TATTTTTTTTATAAT CLI_0347 328782 - 329552 + | peptide ABC transporter ATP-binding protein CLI_0348 329566 - 331536 + | peptide ABC transporter permease TERM 554 331625 - 331660 + F 77 -7.9 -4.15565 | gap 1, opp_overlap 331627 331632, overlap 331632 TTTAATTTTTCAATC TATAAAA-GCTTCGGA CTATA TCTGAAGCTTTTTATA TTTTCAAATAATAAA TERM 555 331652 - 331632 - f 72 -6.1 -4.4715 | opp_overlap 331625 331632, overlap 331627 TTTCAATCTATAAAA GCTTCGGAC TAT ATCTGAAGC TTTTTATATTTTCAA TERM 556 331632 - 331652 + F 100 -7.6 -5.28983 | opp_overlap 331632 331627, overlap 331625 TTTCAATCTATAAAA GCTTCGGA CTATA TCTGAAGC TTTTTATATTTTCAA TERM 557 333091 - 333122 + F 80 -6.7 -4.91778 | opp_overlap 333091 333096, overlap 333096 CTTTTATAGAAACAT GAAAAGCCATCAT AAATGA GTGATGGCTTTTA TTTATTTTATATTTA TERM 558 333096 - 333117 + F 87 -6.6 -5.28281 | opp_overlap 333091 333096, overlap 333091 ATAGAAACATGAAAA GCCATCAT AAATGA GTGATGGC TTTTATTTATTTTAT TERM 559 333117 - 333096 - f 72 -5.9 -4.5394 | opp_overlap 333096 333091, overlap 333091 ATAGAAACATGAAAA GCCATCA TAAATGAG TGATGGC TTTTATTTATTTTAT CLI_0350 333501 - 335072 + | PTS system, glucose/glucoside family, IIBC component glvA-2 335388 - 336713 + | maltose-6'-phosphate glucosidase TERM 560 336822 - 336769 - f 71 -6.9 -4.18697 | opp_overlap 336775, overlap 336777 AAAATTATTGTAAAA TTAATTGAGACTGCCAAAAGTAGAT TAAA ACCTATTTTAGACAGTCTCTTTTAA AAATAAGGTATACAT TERM 561 336775 - 336816 + F 79 -8.1 -4.11394 | opp_overlap 336769 336777 ATTGTAAAATTAATT GAGACTGCCAAAAGTAGAT TAAA ACCTATTTTAGACAGTCTC TTTTAAAAATAAGGT CLI_0352 336897 - 337406 + | PTS system, glucose/glucoside family, IIA component CLI_0353 337711 - 338472 + | SIS domain-containing protein CLI_0354 338691 - 338509 - | hypothetical protein CLI_0355 338960 - 339157 + | cold shock protein TERM 562 339173 - 339201 + F 100 -12.6 -5.05712 | TTAATGAATATTTTA CCCCTTGAATAG CTAGT CTATTTAAGGGG TTTTTAGTTGTTTAT CLI_0356 339500 - 340054 + | hypothetical protein CLI_0357 340489 - 340920 + | rrf2 family protein CLI_0358 341072 - 341677 + | 2-hydroxychromene-2-carboxylate isomerase family protein CLI_0359 341704 - 342342 + | hypothetical protein TERM 563 342485 - 342506 + F 80 -5.9 -5.1417 | opp_overlap 342484 342485 TTTTTACAGGTAAAG CCTATGAGA ATTT TGTCATAGG TTTTTACTTTTATAA CLI_0360 342780 - 343541 + | putative transcriptional regulator TERM 564 343542 - 343565 + F 100 -10.4 -5.08824 | opp_overlap 343542 AGTAATGTTGAGTAA CGTGTTATCT AAAG AGGTAACACG TTTTTTACATAAGAA TERM 565 343565 - 343542 - f 72 -8.2 -3.16921 | opp_overlap 343542 AGTAATGTTGAGTAA CGTGTTATCT AAAG AGGTAACACG TTTTTTACATAAGAA TERM 566 343598 - 343583 - f 70 -4.8 -4.84311 | opp_overlap 343583 TTTTACATAAGAAAA TCTATA TACA TATAGA TATCTAATTATTATA TERM 567 343792 - 343821 + G 77 -8.1 -3.75153 | gap 1, opp_overlap 343792 GCAAAACTAGCAGAA TACC-TTCCATTTT TAA AGAATGGAATGGTA TTTGGATTAGGAAAA CLI_0361 343660 - 345243 + | PTS system, glucose/maltose-specfic, IIBC component TERM 568 346516 - 346506 - g 74 -6.8 -4.2181 | AAAGAAATAATTAAA GCTG GCA CAGC AAAAGGCGGAGAATT glvA-3 345582 - 346916 + | maltose-6'-phosphate glucosidase CLI_0363 346929 - 347402 + | PTS system, glucose/maltose-specific, IIA component TERM 569 347448 - 347486 + F 71 -6.7 -4.08216 | opp_overlap 347452, overlap 347450 347452 TAAAATATATTTAGT AAAAGCTCGGAAAGTGG ATATA CCATGTTCCGAGCTATG TTTTAAAAAAGATGC TERM 570 347450 - 347484 + F 83 -9.3 -3.63922 | opp_overlap 347452, overlap 347448 347452 AAATATATTTAGTAA AAGCTCGGAAAGTGG ATATA CCATGTTCCGAGCTA TGTTTTAAAAAAGAT TERM 571 347482 - 347452 - f 89 -9.7 -4.3014 | opp_overlap 347450 347448 347452 ATATATTTAGTAAAA GCTCGGAAAGTGG ATATA CCATGTTCCGAGC TATGTTTTAAAAAAG TERM 572 347452 - 347482 + F 95 -11.9 -3.39908 | opp_overlap 347452, overlap 347450 347448 ATATATTTAGTAAAA GCTCGGAAAGTGG ATATA CCATGTTCCGAGC TATGTTTTAAAAAAG TERM 573 348851 - 348828 - g 76 -2.5 -5.50499 | TTATATCTAAAAAAA TAAATCCAG GAGATG CTGTATTTA TAAGATATGAAGGCC ilvD 347540 - 349255 + | dihydroxy-acid dehydratase eda 349307 - 349954 + | 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase CLI_0366 349956 - 350960 + | putative 2-dehydro-3-deoxygluconokinase ade 351161 - 353014 + | adenine deaminase CLI_0368 353416 - 354090 + | DNA-binding response regulator CLI_0369 354087 - 355475 + | sensor histidine kinase CLI_0370 355862 - 356830 + | glycosyl transferase, group 2 family protein CLI_0371 356814 - 357233 + | putative cell wall teichoic acid glycosylation protein GtcA TERM 574 357903 - 357893 - g 76 -5.4 -5.10767 | opp_overlap 357893 GATTTAATATAAAAA TGCT TCA AGCA TATATGATAATACCA TERM 575 358539 - 358551 + G 70 -6.3 -4.09455 | opp_overlap 358539 TAATAGCTTATCAGA CCAAA TTA TTTGG TTATTTCCTCTTGCT CLI_0372 357352 - 359643 + | dolichyl-phosphate-mannose-protein mannosyltransferase family protein TERM 576 359683 - 359706 + F 100 -11 -4.29493 | opp_overlap 359684, overlap 359684 TAAATAATGTTTCAA ACCCACCACA GAAA TGTGGTGGGG TTTATGTATTTAATA TERM 577 359684 - 359705 + F 100 -14.5 -3.16611 | opp_overlap 359684, overlap 359683 AAATAATGTTTCAAA CCCACCACA GAAA TGTGGTGGG GTTTATGTATTTAAT TERM 578 359705 - 359684 - f 100 -14.5 -3.59649 | opp_overlap 359684 359683 AAATAATGTTTCAAA CCCACCACA GAAA TGTGGTGGG GTTTATGTATTTAAT TERM 579 359873 - 359901 + F 81 -10.6 -2.52586 | opp_overlap 359870 359873, overlap 359872 359870 359868 359875 TAAAAAGAAATATAA TATATGATAATG AATTA CATTATCATATA GTGTGTTGTAATATA TERM 580 359901 - 359873 - f 95 -10.6 -4.11447 | opp_overlap 359873 359872 359870 359868 359875, overlap 359870 TAAAAAGAAATATAA TATATGATAATG AATTA CATTATCATATA GTGTGTTGTAATATA TERM 581 359875 - 359899 + F 73 -8.8 -2.7924 | opp_overlap 359873 359870, overlap 359873 359872 359870 359868 AAAAGAAATATAATA TATGATAATG AATTA CATTATCATA TAGTGTGTTGTAATA TERM 582 360137 - 360123 - g 70 -4.4 -4.98128 | ATAATGAAAAAGAAA TTATAT ATG ATATAA AGCCCCAATATGGTA CLI_0373 359999 - 361036 + | AraC family transcriptional regulator TERM 583 361065 - 361092 + F 71 -5.6 -4.63486 | gap 1, opp_overlap 361065 361066, overlap 361067 TTTTATTTATTTAAA T-TGCCACAGGTG TAG TACCTGTGGCTTA TTTTATTGGGGAAAT TERM 584 361090 - 361066 - f 80 -10 -2.79878 | opp_overlap 361065 361067, overlap 361065 TTTATTTATTTAAAT TGCCACAGGT GTAGT ACCTGTGGCT TATTTTATTGGGGAA TERM 585 361067 - 361089 + F 100 -14.2 -4.43307 | opp_overlap 361066 361065, overlap 361065 TTATTTATTTAAATT GCCACAGGTG TAG TACCTGTGGC TTATTTTATTGGGGA CLI_0374 361304 - 362332 + | iron chelate ABC transporter solute-binding protein CLI_0375 362335 - 363453 + | iron chelate ABC transporter permease protein CLI_0376 363455 - 364225 + | iron chelate ABC transporter ATP-binding protein TERM 586 364732 - 364750 + G 78 -10.4 -2.81487 | overlap 364731 364729 TTTGTTACGTTCCAT TGGAGATT CAA AATCTCCA CTATATTTTTTGATT TERM 587 365066 - 365079 + G 74 -8.1 -3.63569 | GGAACTACTGTTATG GCTGC CTTT GCAGC TTGTTCAAAGATTGA CLI_0377 364259 - 365587 + | MATE efflux family protein TERM 588 365596 - 365622 + T 80 -8.1 -4.26903 | opp_overlap 365597 365599, overlap 365597 AATATAATTATATAG ATAGGAGTGTT ATATG AACACTCCTAC TTTTAGTGCACTCAG TERM 589 365621 - 365597 - T 90 -11.6 -3.07506 | opp_overlap 365596 365597, overlap 365599 ATATAATTATATAGA TAGGAGTGTT ATATG AACACTCCTA CTTTTAGTGCACTCA TERM 590 365597 - 365621 + T 93 -11.6 -3.1582 | opp_overlap 365597 365599, overlap 365596 ATATAATTATATAGA TAGGAGTGTT ATATG AACACTCCTA CTTTTAGTGCACTCA TERM 591 365619 - 365599 - T 82 -9.8 -3.0868 | opp_overlap 365597 365596, overlap 365597 ATAATTATATAGATA GGAGTGTT ATATG AACACTCC TACTTTTAGTGCACT CLI_0378 366703 - 365732 - | AraC family transcriptional regulator TERM 592 367135 - 367122 - g 70 -5.3 -4.56729 | opp_overlap 367117 367122, overlap 367117 ATGAAAATATTAAAA GCAAT TTCT ATTGC TTCTATAATCTTTAT CLI_0379 367107 - 368039 + | iron ABC transporter, iron-binding protein CLI_0380 368134 - 369063 + | iron compound ABC transporter, iron compound-binding protein TERM 593 369174 - 369217 + G 95 -11.9 -3.65827 | overlap 369175 GTGGTTTTGCTAGTA GTCATATCAGCGGCGTCAA TTTCTT TTGGTGCTGCTGATATGAA TTTGACTACAGCTTG TERM 594 369175 - 369216 + G 100 -15.4 -2.79175 | overlap 369174 TGGTTTTGCTAGTAG TCATATCAGCGGCGTCAA TTTCTT TTGGTGCTGCTGATATGA ATTTGACTACAGCTT TERM 595 369406 - 369418 + G 82 -7.7 -4.37534 | opp_overlap 369406 GACTTATGGGTATAA GTAGC GGT GCTAC TTTTGCTATGGCTTT CLI_0381 369090 - 370118 + | iron compound ABC transporter, permease protein TERM 596 370226 - 370238 + G 77 -5.5 -4.93316 | overlap 370227 GGTAAAATGAATCTC TCTCC TTC GGAGG TTTTTAATGTTCTTA CLI_0382 370115 - 371128 + | iron compound ABC transporter, permease protein CLI_0383 371139 - 371969 + | iron compound ABC transporter, ATP-binding protein CLI_0384 371966 - 373690 + | ABC transporter, ATP-binding/permease protein TERM 597 373701 - 373739 + T 95 -6.3 -6.08342 | opp_overlap 373701 373706 373723 CTTAAAGGTAAAAAA TTAATGACTTAAAGT CTAAAAGCA ACTTTGAGTCGTTAA TTTTTTTATTTATTC CLI_0385 373858 - 373745 - | iron-dependent transcription repressor TERM 598 373986 - 374024 + H 83 -9.2 -3.60627 | opp_overlap 373991, overlap 373991 ATATATCTATATTAT TAAAATTATGCATTTTAT AAT ACAAAATGCATAATTTTC TTTAAAATGAAGTAA TERM 599 373991 - 374019 + H 93 -9.1 -4.88918 | opp_overlap 373991, overlap 373986 TCTATATTATTAAAA TTATGCATTTTAT AAT ACAAAATGCATAA TTTTCTTTAAAATGA TERM 600 374019 - 373991 - H 100 -11.3 -4.33274 | opp_overlap 373991 373986 TCTATATTATTAAAA TTATGCATTTTAT AAT ACAAAATGCATAA TTTTCTTTAAAATGA TERM 601 374257 - 374237 - H 95 -12.7 -3.20723 | opp_overlap 374237 TTGTTATGAACTCAA CACCTCAAT TTG ATTGAGGTG TTTTTTGTTTTACAA TERM 602 374237 - 374257 + H 100 -12.7 -5.79595 | opp_overlap 374237 TTGTTATGAACTCAA CACCTCAAT TTG ATTGAGGTG TTTTTTGTTTTACAA CLI_0386 374375 - 375676 + | xanthine/uracil permease family protein xpt-1 375699 - 376271 + | xanthine phosphoribosyltransferase CLI_0388 376723 - 377415 + | DNA-binding response regulator CLI_0389 377428 - 378408 + | sensor histidine kinase TERM 603 378431 - 378462 + F 100 -7.6 -5.87996 | gap 1, opp_overlap 378431 TATTAAATATATAAA TAGGATAG-ATAGTT TAA AACTATACTATTCTA TTTTTTTATTAATTA TERM 604 378504 - 378479 - f 70 -7.7 -3.39895 | opp_overlap 378482, overlap 378482 TTTTTTATTAATTAA TAAGTGTGACA TACA TGTCATACTTA TGTAAGATTTTGAGA CLI_0390 378584 - 379441 + | undecaprenyl pyrophosphate phosphatase TERM 605 379680 - 379662 - g 83 -9 -4.13421 | overlap 379649 AATAAAAGATAAGAA TCCTTTAA CAC TTAAAGGA GAGGATTTGGCTTTG CLI_0391 379456 - 380202 + | peptide ABC transporter ATP-binding protein TERM 606 381093 - 381103 + G 78 -6.8 -4.67353 | TTTACATCTATTGGA GCTG TAT CAGC TTTTTGGATCAATAA CLI_0392 380202 - 382064 + | peptide ABC transporter permease CLI_0393 382189 - 382596 + | hypothetical protein CLI_0394 382589 - 382996 + | hypothetical protein TERM 607 383045 - 383072 + F 100 -14.3 -3.84246 | opp_overlap 383037 ACAAGAGTGTTTATA GGGTAATGCAG TAATAT CTGCATTACCC TTTAGTAATTAGGCG CLI_0395 383312 - 383668 + | lrgA family protein TERM 608 384154 - 384170 + G 72 -8.7 -2.89177 | opp_overlap 384152, overlap 384149 ATAACAGGTATAATG GGAGCTG TAA TAGCTCC TATAGTGTGTAAGAT CLI_0396 383671 - 384366 + | lrgB-like family protein TERM 609 384450 - 384482 + F 100 -7.9 -5.30155 | opp_overlap 384450 TAATTTTAATAAGAG GGTGTCTCAAAAT AGATTTA ATTTTGAGATGCC TTTTTTAGTTAATGA TERM 610 384556 - 384544 - f 70 -3.5 -5.29385 | AATTCAATTAAAAAA TTAAT ATT ATTAA AATTTATAGTTAACT TERM 611 384647 - 384617 - f 75 -7.2 -4.32233 | opp_overlap 384619 384622 384628 ACAAAAAGCTCAAAA TATAATATATTTAT TTT AAAAATATATTATA ATTAGGGGGACAATA TERM 612 385091 - 385077 - g 70 -8.6 -2.56601 | overlap 385055 385073 385074 385076 TTGACGAAAAAGCAG CAACAG ATG CTGTTG AAGAAGTTAAAAAAA CLI_0397 384662 - 385312 + | putative lipoprotein TERM 613 385338 - 385305 - f 80 -9.3 -3.1886 | opp_overlap 385310 385314, overlap 385310 385314 385322 AGTTAACTTCAGGAA TAAAATAAATTTTAT AAGA ATAAAATTTATTCTA TACATAATAATACAG TERM 614 385333 - 385310 - f 79 -7 -4.71828 | opp_overlap 385310 385314, overlap 385305 385314 385322 ACTTCAGGAATAAAA TAAATTTTAT AAGA ATAAAATTTA TTCTATACATAATAA TERM 615 385413 - 385447 + F 100 -11.6 -5.22006 | opp_overlap 385417, overlap 385414 385417 AATTATATATTTATA CTAAGGAGATGGAAAA GGA TTTACCATCTCCTTAA TTTTTATTATAATAA TERM 616 385414 - 385446 + F 100 -15.1 -3.72119 | opp_overlap 385417, overlap 385413 385417 ATTATATATTTATAC TAAGGAGATGGAAAA GGA TTTACCATCTCCTTA ATTTTTATTATAATA TERM 617 385443 - 385417 - f 93 -12.4 -3.2918 | opp_overlap 385414 385413 385417 ATATATTTATACTAA GGAGATGGAAAA GGA TTTACCATCTCC TTAATTTTTATTATA TERM 618 385417 - 385443 + F 100 -12.4 -3.96481 | opp_overlap 385417, overlap 385414 385413 ATATATTTATACTAA GGAGATGGAAAA GGA TTTACCATCTCC TTAATTTTTATTATA CLI_0398 385681 - 386580 + | radical SAM domain-containing protein TERM 619 387953 - 387917 - g 77 -9 -3.70037 | opp_overlap 387922 387924 TAAGCATTATGCAAA TATATCTGATGAAATA CATCT TATTTCACCAGTTATA TTAGAACCGATTATA CLI_0399 386715 - 388223 + | hypothetical protein TERM 620 388290 - 388236 - f 84 -8.8 -4.3341 | opp_overlap 388238 388239, overlap 388237 388239 TAAAATTAATATAAA TTACATGCCCAAAATCATTATTCTAA AAT TTGAAATAATGGTTTTGGGCATGCTT TTTATTTTCTATGAA TERM 621 388289 - 388237 - f 93 -12.3 -3.18419 | opp_overlap 388238 388239, overlap 388236 388239 AAAATTAATATAAAT TACATGCCCAAAATCATTATTCTAA AAT TTGAAATAATGGTTTTGGGCATGCT TTTTATTTTCTATGA TERM 622 388238 - 388288 + F 100 -15.8 -5.58522 | opp_overlap 388237 388236 388239, overlap 388239 AAATTAATATAAATT ACATGCCCAAAATCATTATTCTAA AAT TTGAAATAATGGTTTTGGGCATGC TTTTTATTTTCTATG TERM 623 388287 - 388239 - f 100 -17.1 -3.12856 | opp_overlap 388238 388239, overlap 388237 388236 AATTAATATAAATTA CATGCCCAAAATCATTATTCTAA AAT TTGAAATAATGGTTTTGGGCATG CTTTTTATTTTCTAT TERM 624 388239 - 388287 + F 100 -19.3 -3.92673 | opp_overlap 388239 388237 388236, overlap 388238 AATTAATATAAATTA CATGCCCAAAATCATTATTCTAA AAT TTGAAATAATGGTTTTGGGCATG CTTTTTATTTTCTAT TERM 625 388775 - 388787 + G 71 -4.9 -4.7261 | ATATACGAGTGCTAT TATAG GGG CTATA TTTATTTTAATAGGT CLI_0400 388533 - 389084 + | hypothetical protein CLI_0401 389263 - 389730 + | hypothetical protein TERM 626 390269 - 390257 - g 81 -3.5 -5.52023 | opp_overlap 390257, overlap 390264 ATGATGAATAAAAAA TATAT TAT ATATA CTTTATGTGTATATA CLI_0402 389723 - 390412 + | putative accessory gene regulator protein B CLI_0403 390396 - 390530 + | putative lipoprotein TERM 627 390543 - 390559 + F 100 -10.9 -4.44667 | opp_overlap 390540 TAAAAAAGAGATCGA GATCGGT TTA ACCGATC TTTCTTGTTAGAAAA TERM 628 390764 - 390742 - g 74 -5 -4.91109 | opp_overlap 390742 390745 GTTGGACTATAAAAA TAATATGTCT GCT ATACATATTA TTTCTACTACTATAT TERM 629 391763 - 391743 - g 93 -8.5 -5.16841 | TTACATCAATAAAAA CATTAATAA GTG TTATTAATG CTAAAGATAGATATA TERM 630 391942 - 391932 - g 86 -3.2 -5.99154 | overlap 391934 TATTAAATAAAAAAA TGCC CTT AGCA AAGGAAGAATGGGAA CLI_0404 390602 - 392305 + | GGDEF/HD domain-containing protein TERM 631 392504 - 392468 - f 100 -13.3 -4.0641 | opp_overlap 392468 392469, overlap 392469 TTGTATGTAGATAAA TCCTATTATAAATGCAA AAT TTGCACTTATAATAGGG TTTTTTATTATGTTA TERM 632 392468 - 392504 + F 100 -13.3 -5.64304 | opp_overlap 392468 392469, overlap 392469 TTGTATGTAGATAAA TCCTATTATAAATGCAA AAT TTGCACTTATAATAGGG TTTTTTATTATGTTA TERM 633 392469 - 392503 + F 100 -14.6 -3.96142 | opp_overlap 392469 392468, overlap 392468 TGTATGTAGATAAAT CCTATTATAAATGCAA AAT TTGCACTTATAATAGG GTTTTTTATTATGTT TERM 634 392503 - 392469 - f 100 -16.8 -3.03525 | opp_overlap 392468 392469, overlap 392468 TGTATGTAGATAAAT CCTATTATAAATGCAA AAT TTGCACTTATAATAGG GTTTTTTATTATGTT CLI_0405 392530 - 393045 + | acetyltransferase TERM 635 393139 - 393163 + F 90 -6.5 -5.79595 | opp_overlap 393139 AATAGTTATAAAAAG CCATATGCAAT ATA AATGTATATGG TTTTTTATTTTCAGC CLI_0406 393442 - 393894 + | hypothetical protein CLI_0407 393921 - 395768 + | sensory box histidine kinase TERM 636 395783 - 395833 + F 100 -17.6 -5.47159 | opp_overlap 395776 395788 395792, overlap 395776 395779 395788 GATAATAATTATTTA TAAAATAAATTTTTTAAAATTGTA TAC TACAATTTTAGAGAATTTATTTTA TTTTTATTTATTAAA TERM 637 395788 - 395828 + F 100 -13.1 -5.48028 | opp_overlap 395776 395788 395792, overlap 395776 395779 395783 TAATTATTTATAAAA TAAATTTTTTAAAATTGTA TAC TACAATTTTAGAGAATTTA TTTTATTTTTATTTA TERM 638 395828 - 395788 - f 86 -8.7 -4.44915 | opp_overlap 395776 395779 395788 395783, overlap 395776 395792 TAATTATTTATAAAA TAAATTTTTTAAAATTGTA TAC TACAATTTTAGAGAATTTA TTTTATTTTTATTTA TERM 639 395824 - 395792 - f 70 -5.1 -4.7878 | opp_overlap 395788 395783, overlap 395788 TATTTATAAAATAAA TTTTTTAAAATTGTA TAC TACAATTTTAGAGAA TTTATTTTATTTTTA CLI_0408 395997 - 396464 + | hypothetical protein CLI_0409 396451 - 397080 + | accessory gene regulator B CLI_0410 397115 - 397249 + | hypothetical protein TERM 640 397257 - 397247 - f 70 -2.6 -5.54894 | opp_overlap 397256 AAGTCATTAAAAAAA TAAA ACC TTTA AATAGTGTATAAGGG TERM 641 397256 - 397297 + F 100 -11.1 -4.23529 | opp_overlap 397247 397260, overlap 397260 397292 AAAAAATAAAACCTT TAAATAGTGTATAAGGGGG GATA CCTGCTTATACACTATATA TTTATATATTAATAT TERM 642 397293 - 397260 - f 84 -9.7 -3.6834 | opp_overlap 397256 397260 397292 AATAAAACCTTTAAA TAGTGTATAAGGGGG GATA CCTGCTTATACACTA TATATTTATATATTA TERM 643 397260 - 397293 + F 95 -11.9 -3.42088 | opp_overlap 397260, overlap 397256 397292 AATAAAACCTTTAAA TAGTGTATAAGGGGG GATA CCTGCTTATACACTA TATATTTATATATTA TERM 644 397584 - 397601 + G 74 -2.1 -5.61881 | TATTTATGCAAAGAA TAGAAAA CATG TTTTTTA TTTTTATTTTTACAG TERM 645 398707 - 398695 - g 70 -3.5 -5.04601 | opp_overlap 398695 TGCAGAAAGCAAAAA TATAA ATA TTATA TTTGATACAGATGTT CLI_0411 397331 - 399184 + | sensory box histidine kinase TERM 646 399304 - 399339 + F 74 -5.1 -5.09521 | gap 1, opp_overlap 399304 399307 AAATGGAAGTTTAAA TAGGCTATATT-TATT AAAAA AATATAATATAGCTTA TTTTTGATTTATTAA CLI_0412 399417 - 400283 + | PP-loop family protein TERM 647 400364 - 400317 - T 87 -6.1 -5.73672 | gap 2, opp_overlap 400312 400317 AAATAATTAAAAAAA GATTTCCAAATATT--TGTAAAT ACAA ATTTACTTTAATATTTGGAAATC TTTTATCTATAAATA TERM 648 400317 - 400364 + T 74 -6.1 -4.61868 | gap 2, opp_overlap 400317, overlap 400312 AAATAATTAAAAAAA GATTTCCAAATATT--TGTAAAT ACAA ATTTACTTTAATATTTGGAAATC TTTTATCTATAAATA CLI_0413 400954 - 400409 - | DNA-binding protein TERM 649 400871 - 400860 - G 71 -3 -5.24531 | ACCTGTGATAAAAAA CTTA TAGA TAAG CCTGTTTTTTCACTA TERM 650 401054 - 401017 - H 100 -10.9 -3.9461 | opp_overlap 401016 401019 401025 401029 TTCTTTCAATAATAA TAGCATAATAACCTTGA TAAT TCAAGATTATTATCCTA ATATTAGAAAAATAT TERM 651 401159 - 401146 - H 80 -2.5 -6.04953 | overlap 401155 ATATAAACAAAAAAA TAATA AATT TATTA CAGTAAACAATAAAA CLI_0414 401308 - 402714 + | amino acid permease family protein TERM 652 402730 - 402748 + F 74 -6 -4.58395 | AAATATGAATTAAGA GGCTATCT AAA AGGTAGTC TTTTTCACAAATAAA TERM 653 402816 - 402803 - f 76 -2.5 -5.9218 | TAGAGAATAAAAAAA TAAAT ATAA ATTTA GGAGTGGATTTTTAT CLI_0415 402830 - 403912 + | M24 family metallopeptidase TERM 654 403990 - 403938 - f 93 -10 -3.91032 | gap 1, opp_overlap 403939 403940 403942, overlap 403940 TAAGTATCCTATAAA CAGACTTCTTGGCTTTAGAGGGAGC TTTT ACTCCCACTAAAGCTTAGAAATC-G TTATCCAGGGACATA TERM 655 403939 - 403990 + F 80 -9.5 -3.28924 | opp_overlap 403938 403940, overlap 403940 403942 AAGTATCCTATAAAC AGACTTCTTGGCTTTAGAGGGAG CTTTTA CTCCCACTAAAGCTTAGAAATCG TTATCCAGGGACATA TERM 656 403989 - 403940 - f 100 -13.7 -3.54 | opp_overlap 403939 403940 403942, overlap 403938 AGTATCCTATAAACA GACTTCTTGGCTTTAGAGGGAGC TTTT ACTCCCACTAAAGCTTAGAAATC GTTATCCAGGGACAT TERM 657 403940 - 403989 + F 89 -13 -2.57211 | opp_overlap 403940 403938, overlap 403939 403942 AGTATCCTATAAACA GACTTCTTGGCTTTAGAGGGAG CTTTTA CTCCCACTAAAGCTTAGAAATC GTTATCCAGGGACAT TERM 658 403942 - 403987 + F 80 -9.8 -2.82623 | opp_overlap 403940 403938, overlap 403940 403939 TATCCTATAAACAGA CTTCTTGGCTTTAGAGGGAG CTTTTA CTCCCACTAAAGCTTAGAAA TCGTTATCCAGGGAC TERM 659 404134 - 404090 - f 95 -8.4 -5.1356 | gap 1, opp_overlap 404090 CTTTAGTAATAAAAA TAACTATGTAAAAAGTATATT ATAA AATATATTTTTT-CATAGTTA TTTTTTTATCCACAA TERM 660 404090 - 404134 + F 100 -10.6 -5.60993 | gap 1, opp_overlap 404090 CTTTAGTAATAAAAA TAACTATGTAAAAAGTATATT ATAA AATATATTTTTT-CATAGTTA TTTTTTTATCCACAA TERM 661 406387 - 406405 + G 70 -8.2 -3.09834 | opp_overlap 406402 AAAGGGATTAACTGC TGCATCAG GAA TTGATGCA TTAACTCATGCAGTA adhE 404450 - 407038 + | bifunctional acetaldehyde-CoA/alcohol dehydrogenase TERM 662 407181 - 407136 - f 100 -19.5 -5.38047 | opp_overlap 407136 CATTTATACAAAAAA TAATGCTGTTTCAAAATAGAG TTAA CTTTATTTTGAAACAGCATTA TTTTTTATAAATGAT TERM 663 407136 - 407181 + F 100 -21.7 -5.28778 | opp_overlap 407136 CATTTATACAAAAAA TAATGCTGTTTCAAAATAGAG TTAA CTTTATTTTGAAACAGCATTA TTTTTTATAAATGAT TERM 664 407300 - 407315 + F 73 -9 -2.87522 | opp_overlap 407284 AAATTGATTCTCACT TTCGCC AAGG GGCGAA TATAATATAAATTAA CLI_0417 407357 - 407644 + | hypothetical protein CLI_0418 407707 - 408297 + | hypothetical protein CLI_0419 408334 - 408504 + | hypothetical protein TERM 665 408556 - 408610 + T 100 -23.3 -5.54079 | opp_overlap 408556 408561 TATAAAAAGCATTAA TAAAATACAGCTTGATGTCCCAAGG CTTTA CATTGGGACATCAAGCTGTATTTTC TTTTTTACTTTTTCA TERM 666 408610 - 408556 - T 100 -24 -3.43187 | opp_overlap 408556, overlap 408561 TATAAAAAGCATTAA TAAAATACAGCTTGATGTCCCAAGGC TTT ACATTGGGACATCAAGCTGTATTTTC TTTTTTACTTTTTCA TERM 667 408605 - 408561 - T 100 -23.9 -4.76123 | opp_overlap 408556, overlap 408556 AAAGCATTAATAAAA TACAGCTTGATGTCCCAAGGC TTT ACATTGGGACATCAAGCTGTA TTTTCTTTTTTACTT CLI_0420 409062 - 408583 - | hypothetical protein TERM 668 408897 - 408909 + g 83 -3.4 -5.68039 | opp_overlap 408897 TTCCTATAAACTTAA GATG ACCTA CATC TTTTTTTGTAAGTTT TERM 669 409290 - 409252 - R 100 -14.9 -4.87291 | opp_overlap 409250 409261, overlap 409254 GAGTGTAATTAAAAA TCCACCTAATTTCTCAC AAGAG GTAAGAAATTAGGTGAA AACTTATAAATCTAT TERM 670 409288 - 409254 - R 100 -15.3 -2.70268 | opp_overlap 409250 409261, overlap 409252 GTGTAATTAAAAATC CACCTAATTTCTCAC AAGAG GTAAGAAATTAGGTG AAAACTTATAAATCT CLI_0421 410415 - 409405 - | hypothetical protein TERM 671 410186 - 410171 - G 72 -9 -2.9462 | overlap 410168 410173 GAGGCACCTAAACCA GAGGTG ATAT CACCTC CCAGATTGGTCCAAG CLI_0422 410519 - 411046 + | PAP2 family protein TERM 672 411079 - 411131 + F 100 -14.7 -4.07885 | opp_overlap 411069 411085, overlap 411085 GATAATGAGGATGTC TCAAAATAGCCTTAATTTTAATATT TAT GATTTTAAAATTAAGGCTATTTTTA TTTTGAGACACCCTC TERM 673 411125 - 411085 - f 100 -13 -4.10161 | opp_overlap 411079 411085 GAGGATGTCTCAAAA TAGCCTTAATTTTAATAT TTATG ATTTTAAAATTAAGGCTA TTTTTATTTTGAGAC TERM 674 411085 - 411125 + F 100 -13.7 -5.45802 | opp_overlap 411085, overlap 411079 GAGGATGTCTCAAAA TAGCCTTAATTTTAATATT TAT GATTTTAAAATTAAGGCTA TTTTTATTTTGAGAC CLI_0423 411457 - 412269 + | polysaccharide deacetylase family protein CLI_0424 412377 - 413063 + | DNA-binding response regulator CLI_0425 413073 - 414467 + | sensor histidine kinase TERM 675 414885 - 414869 - g 76 -3.8 -5.38951 | overlap 414873 414875 AATTTAGATAAAAAA GAAATA GAAGT TATTTC AACTTCTTCGGATAA TERM 676 415006 - 414986 - g 90 -4.8 -5.7946 | overlap 414988 414993 GTTTTAACAAAAAAA TCCAATAG CTCAT CTATTGAA CCTAAGCACAATACA CLI_0426 414530 - 416020 + | putative lipoprotein CLI_0427 416064 - 416630 + | hypothetical protein TERM 677 417239 - 417277 + G 85 -8.4 -4.40003 | opp_overlap 417236, overlap 417233 417241 CTTCAAAATTTATAG TCCCTGTAATTTTAGTTA TAC TAACTACAATTATAGGAA TTTATGTTTATAAAA TERM 678 417241 - 417275 + G 82 -11 -2.53244 | opp_overlap 417236, overlap 417233 417239 TCAAAATTTATAGTC CCTGTAATTTTAGTTA TAC TAACTACAATTATAGG AATTTATGTTTATAA CLI_0428 416656 - 417330 + | DedA family protein TERM 679 417484 - 417517 + T 72 -8.8 -2.6039 | overlap 417483 TTAAAAATTTTTTAC CCAGTAGAGGCGCC TTCCTT GGCTTCACTACTGG CTTCTCACGTCCTGT CLI_0429 420433 - 417755 - | multisensor diguanylate cyclase/phophodiesterase TERM 680 418589 - 418601 + g 77 -5.5 -4.91873 | TTTGGCCGCATACAT TGCGG CAT CTGCA TTTTTCATTAGTGTA TERM 681 418963 - 418977 + g 93 -5.8 -5.66989 | TATTTATAGTTTTAT TTATAG TTT CTATAA TTTTTTTCCTATTTG TERM 682 420031 - 420059 + g 74 -6.3 -4.39092 | opp_overlap 420040, overlap 420040 CATTAGAAGTAGCAA TAGAAGAAATATA ATT TATATTTTTTTTA TTTAATTTTTCATTT TERM 683 420040 - 420050 + g 88 -2.6 -6.25578 | opp_overlap 420040, overlap 420031 TAGCAATAGAAGAAA TATA ATT TATA TTTTTTTTATTTAAT TERM 684 420254 - 420268 + g 75 -5.8 -4.74653 | opp_overlap 420252 420256 TTTATTTAAGTTATA GATATT TTG AATATC TTTATTTATTAATTT TERM 685 420513 - 420486 - R 70 -3.8 -5.22794 | gap 1, opp_overlap 420475 420487 420489 420490 420491, overlap 420475 420489 420491 420493 AGAATTATTAAAAAA TAATATATATCTA TTA TA-ATATATATTA GCTTATAATAGGTAT TERM 686 420545 - 420493 - R 79 -9.1 -3.52788 | gap 1, opp_overlap 420489 420487 420491 420490, overlap 420486 420489 420491 TTAAAAAATAATATA TATCTATTATAATATATATTAGCT TATAAT AGGTA-TATATATTATAATAGATA AAATTTTAAAATAAA TERM 687 420600 - 420564 - R 90 -6.8 -5.79595 | opp_overlap 420564 420568 420597 TTTTAAAATAAAAAA TAAAGTTGCCTATA AAAATTTAG TAAAGGCAACTTTA TATTAAAATATTATT CLI_0430 421820 - 420633 - | hypothetical protein TERM 688 421320 - 421337 + g 88 -4.2 -5.8187 | opp_overlap 421320 ATACCAGTCTGTAAA GATGAT CCACCT ATCATC TTTTTTTATTAAATC TERM 689 422449 - 422490 + G 95 -6.1 -5.78622 | CAAGAGGGGATATAC TTAAAATAGCTAATGTTTT TAAT AAGACAATGGCTATTTCAA TTTTTTTTAAAATGA CLI_0431 422073 - 423413 + | MATE efflux family protein CLI_0432 423605 - 424171 + | HD domain-containing protein TERM 690 424306 - 424276 - f 100 -7.6 -5.40014 | opp_overlap 424276 AAATAAGAACAAAAA GGAAACCCTAACAT ATA ATAAAAGGGTTTCC TTTAGTTTTTATAGA CLI_0433 424483 - 425751 + | monovalent cation:proton antiporter-2 (CPA2) family protein TERM 691 425835 - 425883 + T 73 -7.1 -4.16146 | gap 1, opp_overlap 425816 425836, overlap 425836 ATTATAAAGGTATAA ATTAACACCTATAAG-TTATAG GAAATA CTACAAACTTATAGGTGTTAAA TTTTAACCATATTTT TERM 692 425836 - 425882 + T 85 -10.6 -3.08603 | gap 1, opp_overlap 425816 425836, overlap 425835 TTATAAAGGTATAAA TTAACACCTATAAG-TTATAG GAAATA CTACAAACTTATAGGTGTTAA ATTTTAACCATATTT TERM 693 425882 - 425836 - T 100 -12.8 -4.04319 | gap 1, opp_overlap 425836 425835, overlap 425816 TTATAAAGGTATAAA TTAACACCTATAAGTT-ATAG GAAATA CTACAAACTTATAGGTGTTAA ATTTTAACCATATTT CLI_0434 427208 - 425886 - | aminotransferase, class V TERM 694 426504 - 426488 - G 72 -6.5 -4.2558 | overlap 426465 TAGGTCCTATTAAAA CCCCTAT ACC AAAGGGG GCATACATTTTATGC TERM 695 427521 - 427546 + H 82 -9.3 -3.34222 | opp_overlap 427520 427519 427527, overlap 427527 427542 TTATAAAAATAGAGT TTATAATAAGT AAAT ACTTATTATAA TTATAAAATAATAAT CLI_0435 427671 - 428681 + | hypothetical protein TERM 696 428707 - 428677 - f 100 -14.2 -3.68261 | opp_overlap 428679 428682, overlap 428679 428682 428687 TTATAACAGGGCAAA TATAAGGAAAGTGC GAC GCACTTTCCTTATT TATATTAAGAAAGTA TERM 697 428705 - 428679 - f 100 -16.8 -3.41704 | opp_overlap 428679 428682, overlap 428677 428682 428687 ATAACAGGGCAAATA TAAGGAAAGTGC GAC GCACTTTCCTTA TTTATATTAAGAAAG TERM 698 428679 - 428705 + F 100 -16.8 -4.1891 | opp_overlap 428679 428677 428682 428687, overlap 428682 ATAACAGGGCAAATA TAAGGAAAGTGC GAC GCACTTTCCTTA TTTATATTAAGAAAG TERM 699 428682 - 428702 + F 100 -14.1 -4.21773 | opp_overlap 428679 428677 428682 428687, overlap 428679 ACAGGGCAAATATAA GGAAAGTGC GAC GCACTTTCC TTATTTATATTAAGA TERM 700 428702 - 428682 - f 100 -14.1 -3.83347 | opp_overlap 428682 428679, overlap 428679 428677 428687 ACAGGGCAAATATAA GGAAAGTGC GAC GCACTTTCC TTATTTATATTAAGA TERM 701 428697 - 428687 - f 71 -6.8 -4.11501 | opp_overlap 428682 428679, overlap 428682 428679 428677 GCAAATATAAGGAAA GTGC GAC GCAC TTTCCTTATTTATAT CLI_0436 428813 - 429487 + | hypothetical protein CLI_0437 429433 - 430131 + | DNA-binding response regulator CLI_0438 430121 - 431635 + | sensor histidine kinase TERM 702 431641 - 431674 + F 95 -11.9 -3.484 | opp_overlap 431638 431642 431648, overlap 431642 431648 GGATGAATAAAATTT ATTAAAACCTGGTGC AATT GCATCAGGTTTTAAG TTATAATATAATGAA TERM 703 431642 - 431673 + F 100 -15.4 -2.68719 | opp_overlap 431638 431642 431648, overlap 431641 431648 GATGAATAAAATTTA TTAAAACCTGGTGC AATT GCATCAGGTTTTAA GTTATAATATAATGA TERM 704 431673 - 431642 - f 93 -13.2 -2.85912 | opp_overlap 431642 431641 431648, overlap 431638 431648 GATGAATAAAATTTA TTAAAACCTGGTGC AATT GCATCAGGTTTTAA GTTATAATATAATGA TERM 705 431667 - 431648 - f 78 -7.8 -4.34771 | opp_overlap 431642 431641 431648, overlap 431642 431638 TAAAATTTATTAAAA CCTGGTGC AATT GCATCAGG TTTTAAGTTATAATA TERM 706 431648 - 431667 + F 95 -10 -4.33151 | opp_overlap 431648 431642 431638, overlap 431642 431641 TAAAATTTATTAAAA CCTGGTGC AATT GCATCAGG TTTTAAGTTATAATA CLI_0439 431743 - 433158 + | sodium:solute symporter family protein TERM 707 433888 - 433872 - f 79 -3.8 -5.66229 | opp_overlap 433872 AGGAACAAGAAAAAA TTACAA AAAAA TTGTAA TTTTCAAACAAATAA TERM 708 434425 - 434412 - g 70 -3.8 -5.055 | TTAACTTTTAAAAAA GGTG TACATC CACC ACATGGAAAATACCT TERM 709 434660 - 434633 - g 83 -7 -5.05782 | AGGTACTGTAAAAAA TCTTGCTCCAGT ATTA ACTGCAGCAGGA ACAAAGGTAATGGCA CLI_0440 434388 - 435707 + | electron transport complex, RnfABCDGE type, C subunit CLI_0441 435730 - 436662 + | electron transport complex, RnfABCDGE type, D subunit CLI_0442 436662 - 437333 + | electron transport complex, RnfABCDGE type, G subunit CLI_0443 437344 - 437946 + | SoxR-reducing system protein RsxE TERM 710 438296 - 438278 - g 75 -6 -4.73388 | AATGGTTATTAAAAA GAAAAGTC CAG GACTTTAC AAAGCTCTAGGAATA CLI_0444 438000 - 438578 + | electron transport complex, RnfABCDGE type, A subunit CLI_0445 438592 - 439425 + | ferredoxin TERM 711 439549 - 439522 - f 100 -13 -5.40625 | opp_overlap 439522 AGAGTATAGAAAAAA GAGTTAAGTAAA ATTT TTTACTTAACTC TTTTTTATACGGCAT TERM 712 439522 - 439549 + F 100 -13 -5.24531 | opp_overlap 439522 AGAGTATAGAAAAAA GAGTTAAGTAAA ATTT TTTACTTAACTC TTTTTTATACGGCAT CLI_0446 439818 - 440906 + | amidase domain-containing protein TERM 713 440927 - 440964 + T 90 -10.1 -3.80461 | opp_overlap 440932, overlap 440932 AGTATAGAGTATATA AAAAAGAGCTAAGTAAA TAAA TTTACTCAGCTCTTTTA TTTAATGATCAATTG TERM 714 440959 - 440932 - T 100 -12.2 -5.40625 | opp_overlap 440932 440927 AGAGTATATAAAAAA GAGCTAAGTAAA TAAA TTTACTCAGCTC TTTTATTTAATGATC TERM 715 440932 - 440959 + T 100 -10 -4.95484 | opp_overlap 440932, overlap 440927 AGAGTATATAAAAAA GAGCTAAGTAAA TAAA TTTACTCAGCTC TTTTATTTAATGATC TERM 716 441011 - 440970 - T 100 -14.9 -3.05463 | opp_overlap 440970, overlap 440977 AGCTCTTTTATTTAA TGATCAATTGTTGATTAAT AATT ATTAATTAACAATTGATCA TTTTTCATTGTTCTT TERM 717 440970 - 441011 + T 100 -17.1 -5.03201 | opp_overlap 440970 440977 AGCTCTTTTATTTAA TGATCAATTGTTGATTAAT AATT ATTAATTAACAATTGATCA TTTTTCATTGTTCTT CLI_0447 441545 - 441009 - | hypothetical protein CLI_0448 441955 - 441563 - | hypothetical protein CLI_0449 443103 - 442069 - | apbE family protein TERM 718 442299 - 442310 + g 70 -5.8 -4.35116 | TAAGGCCTTTTTCTG CAGG ATAA CCTG TTTTAGTATCAAATA TERM 719 443596 - 443585 - H 73 -4.4 -5.13521 | overlap 443574 AAATGACTTAAAAAA TCCT GTTT AGGA AAAGATAACGCATTC TERM 720 444745 - 444719 - g 76 -6.6 -4.40184 | TTAATGAAATAGAAA CTGCTGTTAACC CAG AATTATCAGCAG CAGAAAAAGCTGTTA TERM 721 444839 - 444814 - g 88 -9.1 -4.12456 | ATAGCAGCTGCAAAA GCTTTAAAAGC AGAT GCTGTTAAAGC TGTAGATAACGTTAA TERM 722 444888 - 444871 - g 73 -3.5 -5.28481 | gap 1, overlap 444872 444874 444875 GATGCAACTAAAAAA TC-AGCTT TCG AAGCTAGA ATAGCTGCTAAAGAC TERM 723 447288 - 447264 - g 77 -8.7 -3.61806 | overlap 447252 AGATGAATCAGATAA TTCATTTGTAC CAA GTACAGATGAA AAGACTGGTAGAATA CLI_0450 443713 - 447903 + | putative S-layer protein/N-acetylmuramoyl-L-alanine amidase TERM 724 447970 - 448002 + F 84 -9.4 -3.65693 | gap 1, opp_overlap 447970 447972, overlap 447971 447972 447974 ATAAATTAAAAAAAA TA-GAGAAGGGTAGA TTAG TCTATCCTTCTCATA TTTAAGATATATAAT TERM 725 448002 - 447970 - f 100 -7.2 -6.0458 | gap 1, opp_overlap 447970 447971 447972 447974, overlap 447972 ATAAATTAAAAAAAA TA-GAGAAGGGTAGA TTAG TCTATCCTTCTCATA TTTAAGATATATAAT TERM 726 447971 - 448000 + F 87 -10.1 -3.40558 | opp_overlap 447970 447972, overlap 447970 447972 447974 TAAATTAAAAAAAAT AGAGAAGGGTAGA TTAG TCTATCCTTCTCA TATTTAAGATATATA TERM 727 447999 - 447972 - f 100 -11.4 -4.63519 | opp_overlap 447971 447970 447972 447974, overlap 447970 AAATTAAAAAAAATA GAGAAGGGTAGA TTAG TCTATCCTTCTC ATATTTAAGATATAT TERM 728 447972 - 447999 + F 91 -13.6 -2.63853 | opp_overlap 447972 447970, overlap 447971 447970 447974 AAATTAAAAAAAATA GAGAAGGGTAGA TTAG TCTATCCTTCTC ATATTTAAGATATAT TERM 729 447974 - 447997 + F 82 -10.4 -2.85565 | opp_overlap 447972 447970, overlap 447972 447971 447970 ATTAAAAAAAATAGA GAAGGGTAGA TTAG TCTATCCTTC TCATATTTAAGATAT TERM 730 448114 - 448157 + F 100 -15 -3.94393 | opp_overlap 448120, overlap 448120 GATAAAATAGTCATA TCAAAAGACTATTGAATGGA TTAT TCTATTCAATAGTCTTTTTA TCTTTGTTTGTATTC TERM 731 448120 - 448151 + F 100 -14 -5.30448 | opp_overlap 448120, overlap 448114 ATAGTCATATCAAAA GACTATTGAATGGA TTAT TCTATTCAATAGTC TTTTTATCTTTGTTT TERM 732 448151 - 448120 - f 100 -11.8 -4.36262 | opp_overlap 448120 448114 ATAGTCATATCAAAA GACTATTGAATGGA TTAT TCTATTCAATAGTC TTTTTATCTTTGTTT CLI_0451 448382 - 450403 + | N-acetylmuramoyl-L-alanine amidase TERM 733 450658 - 450640 - g 74 -3.2 -5.44721 | AGGATCCTAAAAAAA TAGTTC AGGATAA GAACTA TACAAAAGATCTTAC CLI_0452 450516 - 450884 + | putative lipoprotein TERM 734 450924 - 450893 - f 87 -10.4 -3.20929 | opp_overlap 450893, overlap 450888 AAAATAGATACTGAA GACTATTAAATGAA GTAA TACATTTAATAGTC TTTTATTTTCATGTT TERM 735 450893 - 450924 + F 100 -10.4 -5.17488 | opp_overlap 450893 450888 AAAATAGATACTGAA GACTATTAAATGAA GTAA TACATTTAATAGTC TTTTATTTTCATGTT CLI_0453 450973 - 451239 + | hypothetical protein CLI_0454 451515 - 457352 + | putative cell surface protein TERM 736 457403 - 457384 - T 100 -12.2 -5.54894 | opp_overlap 457384 AATGTAGTAAAAAAA GTGGGAAG TAAA CTTCCCAC TTTTTTGCTCAATTT TERM 737 457384 - 457403 + T 100 -12.2 -5.19261 | opp_overlap 457384 AATGTAGTAAAAAAA GTGGGAAG TAAA CTTCCCAC TTTTTTGCTCAATTT CLI_0455 457591 - 457412 - | hypothetical protein TERM 738 457970 - 457938 - H 71 -8.1 -2.99545 | opp_overlap 457929 457941 457943, overlap 457941 GTTAGATATTATAGA TAATATATTTTAAAT TAA AATTAAAATATATTA AATAAAACATTAAAA CLI_0456 458110 - 461496 + | putative cell wall-binding protease TERM 739 461547 - 461579 + T 100 -12.1 -4.53607 | opp_overlap 461550, overlap 461549 461550 ACTAAGGGGAATACT AAAGGGCAGATACAA AAA TTGTATCTGCCCATG TTTTATAATAATTTT TERM 740 461549 - 461577 + T 100 -14.7 -3.85857 | opp_overlap 461550, overlap 461547 461550 TAAGGGGAATACTAA AGGGCAGATACAA AAA TTGTATCTGCCCA TGTTTTATAATAATT TERM 741 461550 - 461576 + T 100 -18.2 -2.9043 | opp_overlap 461550, overlap 461549 461547 AAGGGGAATACTAAA GGGCAGATACAA AAA TTGTATCTGCCC ATGTTTTATAATAAT TERM 742 461576 - 461550 - T 100 -18.2 -3.9344 | opp_overlap 461549 461547 461550 AAGGGGAATACTAAA GGGCAGATACAA AAA TTGTATCTGCCC ATGTTTTATAATAAT CLI_0457 462571 - 461582 - | acyltransferase family protein TERM 743 462316 - 462304 - G 70 -3.5 -5.0916 | CTTCTAATAGAAAAA TATAT ACA ATATA CCATGCAAAGTAGTC TERM 744 462326 - 462340 + g 82 -4.3 -5.60864 | opp_overlap 462326 AATATACCATGCAAA GTAGT CTGGA ACTAC TTTTTTTAGTCTATG TERM 745 462672 - 462620 - H 77 -7.8 -4.1891 | gap 1, opp_overlap 462621 462622 462624 462632, overlap 462622 462625 CTCCTTCAATATAAA CAGAGTTCTTGGCTTCAGAGGGAGT TTTT ACTCCCACTAAAGCTTAGAAATC-G TTATTCAGGGACGTA TERM 746 462621 - 462672 + H 72 -8 -3.61715 | opp_overlap 462620 462622 462625, overlap 462622 462624 462632 TCCTTCAATATAAAC AGAGTTCTTGGCTTCAGAGGGAGT TTTT ACTCCCACTAAAGCTTAGAAATCG TTATTCAGGGACGTA TERM 747 462671 - 462622 - H 95 -11.5 -3.6944 | opp_overlap 462621 462622 462624 462632, overlap 462620 462625 CCTTCAATATAAACA GAGTTCTTGGCTTCAGAGGGAGT TTTT ACTCCCACTAAAGCTTAGAAATC GTTATTCAGGGACGT TERM 748 462622 - 462671 + H 88 -11.5 -2.76815 | opp_overlap 462622 462620 462625, overlap 462621 462624 462632 CCTTCAATATAAACA GAGTTCTTGGCTTCAGAGGGAGT TTTT ACTCCCACTAAAGCTTAGAAATC GTTATTCAGGGACGT TERM 749 462668 - 462625 - H 86 -11.8 -2.64681 | opp_overlap 462624 462622 462621 462632, overlap 462622 462620 TCAATATAAACAGAG TTCTTGGCTTCAGAGGGAGT TTTT ACTCCCACTAAAGCTTAGAA ATCGTTATTCAGGGA TERM 750 463124 - 463154 + H 75 -8.6 -3.65351 | opp_overlap 463134, overlap 463126 463133 TAAATAAAAGATTAG TGTATAAAATCTAA AAT TTAGGTTTTATATA TTTAAGTGAGGGTAG TERM 751 463126 - 463152 + H 77 -9 -3.40775 | opp_overlap 463134, overlap 463124 463133 AATAAAAGATTAGTG TATAAAATCTAA AAT TTAGGTTTTATA TATTTAAGTGAGGGT TERM 752 463883 - 463867 - g 73 -9.5 -2.55019 | overlap 463866 463864 463870 AATGGTAAAAACTAT CAAGTAG ATG CTACTTG GAATGATCCAGTGCC CLI_0458 463174 - 464685 + | hypothetical protein TERM 753 464720 - 464760 + F 100 -9.3 -5.69793 | opp_overlap 464713 464720 GAATAAAATAATATA GATATAGAATTTATAGTTT ATA AGACTATTTATTCTATATC TTTTTTATTTAATAT TERM 754 464807 - 464829 + F 79 -5 -5.46276 | opp_overlap 464809, overlap 464809 TCTTAAAATATATTC AAGTTAAAAT TTT ATTTTAACTC TTTTTTATCTATCTT TERM 755 464809 - 464827 + F 78 -7.6 -4.34353 | opp_overlap 464809, overlap 464807 TTAAAATATATTCAA GTTAAAAT TTT ATTTTAAC TCTTTTTTATCTATC CLI_0459 465082 - 465993 + | phosphate ABC transporter phosphate-binding protein TERM 756 466804 - 466794 - g 76 -5.4 -5.08824 | CCTGCATCTAAAAAA GCTA TAT TAGC CTCTGTAATTTTAGC CLI_0460 466188 - 467060 + | phosphate ABC transporter permease TERM 757 467133 - 467149 + G 72 -5.1 -4.81734 | TTTTATTGTTACTTT GGTACTT TTT AAGCACC TTTTTAGTAGTGTTT TERM 758 467613 - 467631 + G 81 -4.6 -5.44721 | CCTCTTATTCTTTAG GTATAGAT AAG ACCTATAC TTTTTTTAAGATAAT CLI_0461 467096 - 467926 + | phosphate ABC transporter permease CLI_0462 467928 - 468674 + | phosphate ABC transporter ATP-binding protein TERM 759 468704 - 468690 - f 76 -4.4 -5.34632 | opp_overlap 468690 AATAAAATATAAAAA TTAAAT GTC ATTTAA TAGTTTTCTTATAGA CLI_0463 468800 - 469270 + | hypothetical protein TERM 760 470243 - 470256 + G 76 -3.9 -5.38549 | TTCCCTTCAGTATTA GAAAA TTTA TTTTC TTTTTCTTATTTAAA CLI_0464 469877 - 471328 + | amino acid permease family protein TERM 761 471401 - 471361 - T 100 -15.7 -5.63012 | opp_overlap 471366 471371 471400, overlap 471366 AAAAACAAATAAAAA CGTAATAAAAGGAAAGTGC TAT GCACTTTCCTTTTATTGTG GAATTATTCTATTGA TERM 762 471396 - 471366 - T 100 -18.6 -3.54768 | opp_overlap 471366 471371, overlap 471361 CAAATAAAAACGTAA TAAAAGGAAAGTGC TAT GCACTTTCCTTTTA TTGTGGAATTATTCT TERM 763 471366 - 471396 + T 100 -18.6 -3.4015 | opp_overlap 471366 471361, overlap 471371 CAAATAAAAACGTAA TAAAAGGAAAGTGC TAT GCACTTTCCTTTTA TTGTGGAATTATTCT TERM 764 471371 - 471391 + T 100 -14.1 -4.78839 | opp_overlap 471366 471361, overlap 471366 AAAAACGTAATAAAA GGAAAGTGC TAT GCACTTTCC TTTTATTGTGGAATT TERM 765 471402 - 471423 + T 79 -8.9 -3.76952 | overlap 471400 471405 TTTCCTTTTATTGTG GAATTATTC TATT GAATAATTC TTTAAATTCAGTACC CLI_0465 471948 - 471394 - | putative lipoprotein CLI_0466 472137 - 472967 + | hypothetical protein TERM 766 472981 - 473011 + F 100 -5.6 -6.23545 | opp_overlap 472972 472981 472980 472997 AACATAGACAAAAAG GTGTCTCAAAAT TAAATCT ATTTTTAGACAC TTTTTTTTATTTAAG CLI_0467 473045 - 473740 + | hypothetical protein CLI_0468 473827 - 474165 + | single-strand nucleic acid-binding domain-containing protein TERM 767 474201 - 474191 - f 76 -2.6 -5.93252 | opp_overlap 474196, overlap 474196 TTCAAAAATAAAAAA TTAA GTT TTAA TAAAAATTTATCCGT CLI_0469 474419 - 474970 + | hypothetical protein TERM 768 475315 - 475285 - g 81 -2.7 -5.80951 | gap 1, opp_overlap 475296, overlap 475286 ATTTAAAAGAAAAAA GCATACTC-ACACT ATAC AGTGTAAAGTATGT CATAAAGAGGTGCAG TERM 769 475314 - 475286 - g 70 -6.2 -4.0613 | gap 1, opp_overlap 475296, overlap 475285 TTTAAAAGAAAAAAG CATACTC-ACACT ATAC AGTGTAAAGTATG TCATAAAGAGGTGCA CLI_0471 475034 - 475468 + | FUR family transcriptional regulator CLI_0470 475812 - 475465 - | hypothetical protein CLI_0472 476083 - 477141 + | HD domain-containing protein TERM 770 477160 - 477197 + F 100 -14.5 -4.10566 | opp_overlap 477163 477169, overlap 477163 TTGTTAATATGAGTA TAAGCACAACATAAAAT TTAA ATTATATGTTGTGCTTA TTTGTATAATAATAT TERM 771 477163 - 477194 + F 100 -11.8 -4.16814 | opp_overlap 477163 477169, overlap 477160 TTAATATGAGTATAA GCACAACATAAAAT TTAA ATTATATGTTGTGC TTATTTGTATAATAA TERM 772 477194 - 477163 - f 95 -11.8 -3.47307 | opp_overlap 477160 477163, overlap 477169 TTAATATGAGTATAA GCACAACATAAAAT TTAA ATTATATGTTGTGC TTATTTGTATAATAA CLI_0473 477278 - 478300 + | S54 family peptidase CLI_0474 480525 - 478471 - | methyl-accepting chemotaxis protein TERM 773 479351 - 479367 + g 74 -8.1 -3.63707 | opp_overlap 479357 GCAGACAATTCTTCG GATATAG ATA CTATATC TTTAAGGCTTATATT CLI_0475 483164 - 481428 - | putative cell division protease FtsH-like protein TERM 774 483109 - 483076 - G 72 -8.3 -3.28712 | opp_overlap 483084, overlap 483084 TTTGTTTTTTTAGAA CTATAGAAGTTAAGA GAAA TCATAACTGCTATAG ATAAAAAGGCAGTTA TERM 775 483132 - 483147 + g 71 -3.4 -5.17786 | overlap 483126 GGCAGTTAATAAAGG TAAAAT AATA ATTTTA TTTTTAATTTTATTC TERM 776 483874 - 483858 - gH 79 -8.1 -3.95126 | overlap 483861 GAAAAAGAAGTTAAA GAAGAAA AAT TTTCTTC AAATAAAAAGTATAG TERM 777 483947 - 483935 - gH 81 -3.5 -5.55769 | opp_overlap 483935 TCTCACAAGAAAAAA TTTAA AAA TTAAA TTACCTAATAAGTAT CLI_0476 483384 - 484439 + | hypothetical protein rnhA 484414 - 484863 + | ribonuclease HI TERM 778 485017 - 484995 - g 76 -9.2 -3.09492 | GCTGGAATGTTAATA GTACCTCAAT TAG ATAGAGGTAC TAGAAGAAGAATAAA CLI_0478 484926 - 485102 + | hypothetical protein TERM 779 485139 - 485095 - f 100 -14 -3.40566 | gap 1, opp_overlap 485106, overlap 485106 ATATGAGAGGGATAA TG-AGATAAAAAGATTTGGGG AAAG CCCCAAATCTTTTTATATACA ATAAATACAAAAATG TERM 780 485106 - 485127 + F 100 -13.1 -4.9792 | opp_overlap 485106 485095 ATAATGAGATAAAAA GATTTGGGG AAAG CCCCAAATC TTTTTATATACAATA TERM 781 485127 - 485106 - f 100 -13.1 -5.05079 | opp_overlap 485106, overlap 485095 ATAATGAGATAAAAA GATTTGGGG AAAG CCCCAAATC TTTTTATATACAATA CLI_0479 485283 - 486587 + | TPR repeat-containing DNA binding protein CLI_0480 486619 - 487872 + | TPR repeat-containing protein CLI_0481 488186 - 488323 + | hypothetical protein CLI_0482 488474 - 489079 + | DJ-1/PfpI family protein TERM 782 489339 - 489354 + G 83 -7.6 -4.60041 | opp_overlap 489338 TTTTGGCAGAATTAT GAAGGA ACAC TCCTTC TTTTTACAAATAGGT TERM 783 489539 - 489523 - g 77 -7.3 -4.3586 | opp_overlap 489522 489523 CCATTTACATTAAAA GCTGAAA TGG CTTCAGC ATATTTTACAGGAGT CLI_0483 489337 - 490200 + | hypothetical protein TERM 784 490211 - 490246 + F 100 -12.2 -4.84761 | opp_overlap 490215, overlap 490215 AATAAAATTTAATGC TAAATAAGCGTCGATA AAAA TATTGATGCTTATTTA TTTTTGTGACAATAT TERM 785 490215 - 490242 + F 91 -8.6 -4.96501 | opp_overlap 490215, overlap 490211 AAATTTAATGCTAAA TAAGCGTCGATA AAAA TATTGATGCTTA TTTATTTTTGTGACA TERM 786 491935 - 491919 - g 81 -3.8 -5.54338 | overlap 491913 491921 CAATGAAAAGAAAAA TATTTC AATTA GAAATA GAAAAGGAAGCATTG clpB 490652 - 493252 + | clpB protein TERM 787 493762 - 493794 + T 72 -8.4 -3.20878 | ATAGGACGTTTACTT AGCTCTGTTGCCAC AGGAC GTGGCATTAGAGCG TTAGCTTAAATATTA CLI_0485 494643 - 493915 - | CobB/CobQ family glutamine amidotransferase CLI_0486 496062 - 494701 - | UDP-N-acetylmuramyl tripeptide synthetase-like protein TERM 788 495897 - 495913 + g 76 -9.5 -3.16564 | opp_overlap 495897, overlap 495886 495891 495890 495888 TAGTTCCTGTTACAA GGATTAC TTT GTAATCC TTAGCTACTGTTTTT TERM 789 495913 - 495897 - G 78 -9.5 -3.28924 | opp_overlap 495886 495891 495897 495890 495888 TAGTTCCTGTTACAA GGATTAC TTT GTAATCC TTAGCTACTGTTTTT TERM 790 497015 - 497031 + G 87 -8.1 -4.83169 | opp_overlap 497000 496999 497015 497014, overlap 497030 TGCAATTGAAAAATT GCAATAA AAC TTATTGC TTTTTGTCAGAAGCT manA 496327 - 497307 + | mannose-6-phosphate isomerase, class I TERM 791 497527 - 497565 + F 75 -8.5 -3.52896 | opp_overlap 497526 497525 497529 497555, overlap 497525 TCTTTTTTAAGAAGG TATTCACAATATCTTTT TAATT GAAAAATATTGTGAATA TTATATAAATAATAA CLI_0488 497657 - 498772 + | putative lipoprotein CLI_0489 498880 - 499734 + | undecaprenyl pyrophosphate phosphatase TERM 792 499755 - 499795 + T 100 -18.7 -5.02502 | opp_overlap 499759 TAAAGAGCGTTGTTA TATAGGACTATTAGCAG TGTAAAT CTGCTAATAGTCCTATA TTTTTATATGATATC TERM 793 499791 - 499759 - T 100 -15.1 -2.87344 | opp_overlap 499755 GAGCGTTGTTATATA GGACTATTAGCAG TGTAAAT CTGCTAATAGTCC TATATTTTTATATGA TERM 794 501633 - 501614 - T 75 -9.2 -2.65808 | opp_overlap 501617 501620, overlap 501611 501626 AGTCGTAACAAGGTA GCCGTAGG AGAA CCTGCGGC TGGATCACCTCCTTT TERM 795 501740 - 501760 + T 85 -9.9 -3.29593 | opp_overlap 501731 501737 501740, overlap 501738 ATATAATTAAAATAA GTTAAGATA AAT TATCTTAAC TATTAGTTATGGAAT TERM 796 501760 - 501740 - T 95 -9.9 -4.36586 | opp_overlap 501740 501738, overlap 501731 501737 ATATAATTAAAATAA GTTAAGATA AAT TATCTTAAC TATTAGTTATGGAAT TERM 797 501831 - 501815 - T 72 -8.7 -2.62616 | overlap 501830 TCAGTTGGGAGAGCA CCTGCCT TGC AAGCAGG GGGTCAGGAGTTCGA TERM 798 502037 - 502016 - T 82 -9.5 -3.41708 | gap 1, overlap 502020 GTAATTAAAATGGAA CTCACTCAGC AGT GCTGAG-GAG TATAGAATTCTAATA TERM 799 502034 - 502020 - T 79 -10 -2.6027 | overlap 502016 TTAAAATGGAACTCA CTCAGC AGT GCTGAG GAGTATAGAATTCTA TERM 800 502225 - 502210 - T 72 -9 -2.69489 | opp_overlap 502208 502210 502220, overlap 502207 GAATGAGGAAACTCA CATGGG TAAC CCCATG TATTATGCACTGAAT TERM 801 502210 - 502225 + T 75 -9 -3.23572 | opp_overlap 502210 502207, overlap 502208 502220 GAATGAGGAAACTCA CATGGG TAAC CCCATG TATTATGCACTGAAT TERM 802 502369 - 502352 - T 76 -8.5 -3.695 | opp_overlap 502351 GGGAAAGAGCCCAAA CCAGAAA CTTG TTTCTGG GGTTGTGGATAGATC TERM 803 502535 - 502520 - T 81 -10.4 -2.71011 | ACCTTGTGGGAAGCA GGGAGG ACCA CCTCCC AAGGCTAAATACTAC TERM 804 502609 - 502598 - T 75 -7.2 -4.2354 | GAAAGGTGAAAAGAA CCCC GGAA GGGG AGTGAAATAGAACCT TERM 805 503431 - 503415 - T 71 -6.5 -4.08767 | CTTATTGGCCGAAAA CCTAAGG TTT CCTGAGG AAGGTTCGTCCGCTC TERM 806 505070 - 505049 - T 82 -9.5 -3.36823 | gap 1, opp_overlap 505045, overlap 505044 505053 CTTTTTAAAAGGTAA CTCACTCAGC AAG GCTGAG-GAG TACTGATTTAAAACG TERM 807 505067 - 505053 - T 79 -10 -2.6027 | opp_overlap 505045, overlap 505049 505044 TTAAAAGGTAACTCA CTCAGC AAG GCTGAG GAGTACTGATTTAAA TERM 808 505351 - 505379 + T 100 -13.3 -3.96216 | opp_overlap 505351 ATATTAATATAAAAA GGATGTTGGTATA TTT TATTCCAACATCC TTATTTGCATACAAA TERM 809 505379 - 505351 - T 100 -13.3 -5.13344 | opp_overlap 505351 ATATTAATATAAAAA GGATGTTGGTATA TTT TATTCCAACATCC TTATTTGCATACAAA TERM 810 505586 - 505554 - T 79 -9.8 -2.68986 | opp_overlap 505578, overlap 505553 ACAGGATATGAGAAG CCAGTAGTGAAGCC AGGAA GGCGCCTCTACTGG GTAGAAAATTTTTAA CLI_0500 506551 - 505688 - | metallo-beta-lactamase family protein CLI_0501 506688 - 507410 + | putative 1-acyl-sn-glycerol-3-phosphate acyltransferase TERM 811 507455 - 507411 - f 70 -7.3 -3.73435 | opp_overlap 507414, overlap 507407 507413 507414 507416 AAAGCAAGAAATTAA GAGGAGAGTGTCTCAAAATAA ATT TAATTTTGAGACATTCTCTTT TTTTTATTATTAAGT TERM 812 507453 - 507413 - f 87 -9.9 -3.42564 | opp_overlap 507414, overlap 507411 507407 507414 507416 AGCAAGAAATTAAGA GGAGAGTGTCTCAAAATAA ATT TAATTTTGAGACATTCTCT TTTTTTTATTATTAA TERM 813 507414 - 507452 + F 100 -15.6 -6.22691 | opp_overlap 507413 507411 507407 507414 507416 GCAAGAAATTAAGAG GAGAGTGTCTCAAAATAA ATT TAATTTTGAGACATTCTC TTTTTTTTATTATTA TERM 814 507452 - 507414 - f 91 -13.4 -2.64454 | opp_overlap 507414, overlap 507413 507411 507407 507416 GCAAGAAATTAAGAG GAGAGTGTCTCAAAATAA ATT TAATTTTGAGACATTCTC TTTTTTTTATTATTA TERM 815 507450 - 507416 - f 80 -10.2 -2.8507 | opp_overlap 507414, overlap 507414 507413 507411 507407 AAGAAATTAAGAGGA GAGTGTCTCAAAATAA ATT TAATTTTGAGACATTC TCTTTTTTTTATTAT CLI_0502 508142 - 509503 + | HMGL-related enzyme CLI_0503 509647 - 511572 + | aconitate hydratase CLI_0504 511608 - 512606 + | isocitrate/isopropylmalate family dehydrogenase TERM 816 512685 - 512718 + F 100 -9.9 -5.93809 | opp_overlap 512685 512706 TTAAATTATATTTAA GTTTTTCTTATGATT TTAA GATTATAAGAAAAAC TTTTTTTTATAAAAA CLI_0505 512854 - 513639 + | polar amino acid ABC transporter ATP-binding protein TERM 817 514042 - 514064 + F 90 -6.3 -5.95286 | CAAGTACGTCTATAT GCCTTGAGT GTAAA GCTTAAGGC TTTTTTGTTTTTGAT CLI_0506 514158 - 515924 + | Na+/H+ antiporter family protein TERM 818 515953 - 515927 - T 100 -16.8 -4.43501 | opp_overlap 515927 515930 515935 AATGGATGCATAAAA TAAGGAAAGTGC TTA GCACTTTCCTTA TTGTTCTTCTCTAGG TERM 819 515927 - 515953 + T 100 -16.8 -4.06864 | opp_overlap 515927, overlap 515930 515935 AATGGATGCATAAAA TAAGGAAAGTGC TTA GCACTTTCCTTA TTGTTCTTCTCTAGG TERM 820 515930 - 515950 + T 100 -14.1 -4.14147 | opp_overlap 515927, overlap 515927 515935 GGATGCATAAAATAA GGAAAGTGC TTA GCACTTTCC TTATTGTTCTTCTCT TERM 821 515935 - 515945 + T 71 -6.8 -4.15849 | opp_overlap 515927, overlap 515930 515927 CATAAAATAAGGAAA GTGC TTA GCAC TTTCCTTATTGTTCT CLI_0507 516166 - 515951 - | hypothetical protein panD 516637 - 516254 - | aspartate alpha-decarboxylase TERM 822 516859 - 516902 + r 100 -9.8 -5.01553 | opp_overlap 516884 AGGTTGAAATAGGAT TTCTAAGCTTTAGTGGGAGT AAAA ACTTCCTTTGAAGTTTAGAA TTTTGTTTATACATT panC 517792 - 516947 - | pantoate--beta-alanine ligase TERM 823 517212 - 517229 + g 77 -7.1 -4.24711 | GCAGATTTTCTTTCC TGCTTAT TTAA ATAAGCA TTTCTTGAGCTTTTA TERM 824 517694 - 517680 - G 70 -8.6 -2.50074 | overlap 517679 TTTTTTATAAGAGAG GCATGA CCT TCATGC AAATATCCCATAGTA panB 518674 - 517847 - | 3-methyl-2-oxobutanoate hydroxymethyltransferase TERM 825 518612 - 518622 + g 72 -4 -5.1361 | ATAATCATAGGCAGT TAAC ATA GTTA TTTTTTCACCTTTGT TERM 826 518822 - 518797 - H 75 -9.3 -2.59981 | opp_overlap 518799, overlap 518796 518799 GACAATTAGATGAAG TACTTTAAATA AGGA TATTTAAAGTA TATGAATATAAAAAT TERM 827 522590 - 522563 - g 76 -8.7 -3.42241 | opp_overlap 522562 522568 522580, overlap 522568 AAGAGATATGGATAA TATAATATCTG GTATAT CAGATATTATA CCTGTTATGGTTAAA addB 519450 - 522902 + | ATP-dependent nuclease subunit B CLI_0512 523502 - 523116 - | hypothetical protein CLI_0513 523809 - 524459 + | TPR repeat-containing protein CLI_0514 524462 - 525148 + | hypothetical protein TERM 828 525163 - 525203 + T 93 -7 -5.72622 | opp_overlap 525177, overlap 525169 525201 ATAACTTAATGTACA TTATGACCTACTAATGGT TAATT ACCAATGGTAGGTTTTAA TTTTTTATTTATAGA TERM 829 525169 - 525197 + T 91 -8.2 -4.9251 | opp_overlap 525177, overlap 525163 TAATGTACATTATGA CCTACTAATGGT TAATT ACCAATGGTAGG TTTTAATTTTTTATT TERM 830 525201 - 525241 + T 79 -8.8 -3.57462 | opp_overlap 525228 525239 525240, overlap 525163 525204 ACCAATGGTAGGTTT TAATTTTTTATTTATAGA AAATA TATATAAATAAAAAATTA TTTAAGAATAAACTA TERM 831 525252 - 525239 - T 73 -2.5 -5.76237 | opp_overlap 525201 525242, overlap 525228 525240 525242 TATATAAATAAAAAA TTATT TAAG AATAA ACTATATTATTCATA TERM 832 525291 - 525242 - T 72 -7.5 -3.57147 | opp_overlap 525242, overlap 525228 525239 525240 ATAAATAAAAAATTA TTTAAGAATAAACTATATTATTC ATAA GGATAATACTGTTTTTTCTTAAA TTTTTATGTATGTAG TERM 833 525242 - 525291 + T 90 -7.5 -5.07275 | opp_overlap 525228 525239 525240 525242 ATAAATAAAAAATTA TTTAAGAATAAACTATATTATTC ATAA GGATAATACTGTTTTTTCTTAAA TTTTTATGTATGTAG TERM 834 525406 - 525431 + T 82 -9.1 -4.03413 | TCTAAGTTAAGGTTT GTATTTCTGCA TAAA TGCAGGGATAC TTTCTATAAAAAAAT CLI_0515 526005 - 525397 - | TetR family transcriptional regulator hypB-1 526252 - 526923 + | hydrogenase accessory protein HypB CLI_0517 527159 - 529837 + | pyridine nucleotide-disulphide oxidoreductase family protein hypA-1 529893 - 530234 + | hydrogenase nickel insertion protein HypA CLI_0519 530274 - 531260 + | hypothetical protein TERM 835 531276 - 531314 + T 95 -12.8 -3.63073 | opp_overlap 531286, overlap 531286 531310 AATAAAATCTATTTA CAGTAAAAAATGTAGGTT AAG AACCTACATTTTTTATTC TTATTGAGGAATATA TERM 836 531286 - 531304 + T 100 -10.4 -5.70522 | opp_overlap 531286, overlap 531276 ATTTACAGTAAAAAA TGTAGGTT AAG AACCTACA TTTTTTATTCTTATT TERM 837 531304 - 531286 - T 100 -10.4 -5.22312 | opp_overlap 531286 531276 ATTTACAGTAAAAAA TGTAGGTT AAG AACCTACA TTTTTTATTCTTATT CLI_0520 531922 - 531434 - | hypothetical protein TERM 838 531621 - 531645 + g 72 -4.3 -5.03405 | TATTTGTTGTGCACG GACTTATCATT TAT AAAGTTAAGTC TTTTTATATCATATT TERM 839 532734 - 532724 - g 72 -4 -5.08169 | ATAGAGTTGAAAAAA CTTA TTT TAAG ATGCAAGAAGCATGG CLI_0521 532339 - 533130 + | hypothetical protein addA 533288 - 537127 + | recombination helicase AddA TERM 840 537917 - 537900 - g 75 -4.9 -5.093 | overlap 537905 GTTAAAACAATAAAA GAAAATC AAAA GACTTTC GAAACTATGATATAC TERM 841 537919 - 537905 - g 73 -3.6 -5.33124 | overlap 537900 AACAATAAAAGAAAA TCAAAA GAC TTTCGA AACTATGATATACAA TERM 842 538212 - 538198 - g 74 -2.2 -5.50925 | overlap 538202 AATTAATAGAAAAAA TTACTT ATC AAATAA CCAATATAACAGAAG CLI_0523 537276 - 538958 + | methyl-accepting chemotaxis protein pepT 539035 - 540261 + | peptidase T TERM 843 540540 - 540514 - T 71 -6.8 -4.05033 | opp_overlap 540515 540522, overlap 540515 TTTATTTTATATAAA TTTAGATATAAT CTA ATTATATCTAAG CAGTACCTTCTTTTT TERM 844 540539 - 540515 - T 85 -10.3 -3.02698 | opp_overlap 540515 540522, overlap 540514 TTATTTTATATAAAT TTAGATATAAT CTA ATTATATCTAA GCAGTACCTTCTTTT CLI_0525 541468 - 540536 - | phospholipase family protein TERM 845 540672 - 540694 + g 100 -12.2 -3.01309 | opp_overlap 540676, overlap 540676 540688 TCAAAGTCTGTAGAG CTAATTCCTA AGG TAGGAATTAG TATAGTTCTATCTAT TERM 846 541700 - 541668 - H 72 -8.4 -3.20878 | TAATATTTAAGCTAA CGCTCTAATGCCAC GTCCT GTGGCAACAGAGCT AAGTAAACGTCCTGT CLI_0526 542266 - 542982 + | metallo-beta-lactamase family protein CLI_0527 543188 - 543646 + | glyoxalase CLI_0528 543786 - 544001 + | hypothetical protein TERM 847 544024 - 544050 + F 86 -5.3 -5.79595 | TAACATCAATTAAAG TACTTTTAGAG TGTGT CTTTAAAGGTA TTTTTTATTTTGGGA CLI_0529 544213 - 545628 + | N-acetylmuramoyl-L-alanine amidase-like protein CLI_0530 546572 - 545937 - | His/Glu/Gln/Arg/opine ABC transporter permease CLI_0531 547388 - 546585 - | polar amino acid ABC transporter amino acid-binding protein TERM 848 547297 - 547307 + g 72 -5.4 -4.70353 | TTTATATCCTTAAGG GAAG TAT CTTC TTTTGATTTGTTATC TERM 849 547639 - 547627 - g 79 -7.7 -4.33576 | GAAGAAATATACAAA GCCAT ATT ATGGC CCAAATAATTATTTT CLI_0532 547610 - 548338 + | hypothetical protein TERM 850 548640 - 548601 - T 100 -7.6 -5.47159 | gap 1, opp_overlap 548601 GGTTAATATAAAAAA GTATAAGATAAAAT-TTTA TTA TAAAGATTATATCTTATAC TTTTTATTTATAAAA TERM 851 548601 - 548640 + T 100 -7.6 -5.38054 | gap 1, opp_overlap 548601 GGTTAATATAAAAAA GTATAAGATAAAAT-TTTA TTA TAAAGATTATATCTTATAC TTTTTATTTATAAAA CLI_0533 549886 - 548675 - | EAL domain-containing protein TERM 852 549107 - 549131 + g 83 -3 -5.75342 | gap 1, overlap 549113 TTCACCAATTAAAGT TATAGCCTTCT TTAC AGA-GGTTATA TTTTTTTTAAGAGAA thiE 550768 - 550151 - | thiamine-phosphate pyrophosphorylase TERM 853 550295 - 550309 + g 75 -4.3 -5.3104 | TATAGCTACAGAAGG GATAG ATATG CTATC TTTTATTTTTGATAG thiM-1 551550 - 550759 - | hydroxyethylthiazole kinase TERM 854 551607 - 551658 + r 95 -12.8 -3.73387 | opp_overlap 551624 551647, overlap 551611 AAAAAGATTGTTTAT GTTTTTTGCTTAATTAATAAATTT TATA AAATTTATTAATTAAGCAAATTGC TTCCTTTATTCTAAT TERM 855 551611 - 551654 + r 100 -18.8 -3.53924 | opp_overlap 551624 551647, overlap 551607 AGATTGTTTATGTTT TTTGCTTAATTAATAAATTT TATA AAATTTATTAATTAAGCAAA TTGCTTCCTTTATTC TERM 856 551718 - 551757 + r 72 -9 -2.62184 | overlap 551723 ATGATTGTCCATACT TTTAAGTTTAATTTATAG ATTC TTATTAATTAAACTTAAA TAGTATCACAGAAGA thiD-1 552578 - 551778 - | phosphomethylpyrimidine kinase TERM 857 552835 - 552857 + H 70 -4.9 -4.79667 | opp_overlap 552835 ATTAAAACAAAAAAA GATGTACTG AAAAG CAATACATC TTTTTAATAAATTTT TERM 858 552857 - 552835 - H 100 -7.1 -6.11229 | opp_overlap 552835 ATTAAAACAAAAAAA GATGTACTG AAAAG CAATACATC TTTTTAATAAATTTT CLI_0537 553156 - 553707 + | hypothetical protein TERM 859 553714 - 553764 + F 100 -11.4 -4.8048 | opp_overlap 553715 553716 553717, overlap 553715 553716 ACAGGTTAATTAAAA AGCTAGGACTGTTACATGGTGATT TTT AATCATTATGTAACAGTCCTAAAA TTTTTAATATAAGAA TERM 860 553715 - 553763 + F 100 -14.9 -3.47806 | opp_overlap 553715 553716 553717, overlap 553714 553716 CAGGTTAATTAAAAA GCTAGGACTGTTACATGGTGATT TTT AATCATTATGTAACAGTCCTAAA ATTTTTAATATAAGA TERM 861 553763 - 553715 - f 100 -12.7 -4.87291 | opp_overlap 553715 553714 553716, overlap 553716 553717 CAGGTTAATTAAAAA GCTAGGACTGTTACATGGTGATT TTT AATCATTATGTAACAGTCCTAAA ATTTTTAATATAAGA TERM 862 553762 - 553716 - f 100 -16.2 -3.51651 | opp_overlap 553715 553714 553716, overlap 553715 553717 AGGTTAATTAAAAAG CTAGGACTGTTACATGGTGATT TTT AATCATTATGTAACAGTCCTAA AATTTTTAATATAAG TERM 863 553716 - 553762 + F 100 -18.4 -2.68202 | opp_overlap 553716 553715 553717, overlap 553715 553714 AGGTTAATTAAAAAG CTAGGACTGTTACATGGTGATT TTT AATCATTATGTAACAGTCCTAA AATTTTTAATATAAG TERM 864 553761 - 553717 - f 100 -17.5 -2.70268 | opp_overlap 553716 553715 553714, overlap 553716 553715 GGTTAATTAAAAAGC TAGGACTGTTACATGGTGATT TTT AATCATTATGTAACAGTCCTA AAATTTTTAATATAA TERM 865 554024 - 554068 + F 100 -12.8 -4.21194 | gap 1, opp_overlap 554030 554032 554035, overlap 554028 TAAATAAAATCTGTG GTAATATACAATATATAATAA AAGT TTATTATATATTGTATAT-AC TTTTAACTAATAAGG TERM 866 554028 - 554065 + F 100 -14.7 -3.11922 | opp_overlap 554030 554032 554035, overlap 554024 TAAAATCTGTGGTAA TATACAATATATAATAA AAGT TTATTATATATTGTATA TACTTTTAACTAATA TERM 867 554063 - 554030 - f 93 -12.9 -3.0264 | opp_overlap 554028 554024, overlap 554032 554035 AAATCTGTGGTAATA TACAATATATAATAA AAGT TTATTATATATTGTA TATACTTTTAACTAA TERM 868 554061 - 554032 - f 87 -11.1 -3.06815 | opp_overlap 554028 554024, overlap 554030 554035 ATCTGTGGTAATATA CAATATATAATAA AAGT TTATTATATATTG TATATACTTTTAACT TERM 869 554058 - 554035 - f 70 -7 -3.68024 | opp_overlap 554028 554024, overlap 554032 554030 TGTGGTAATATACAA TATATAATAA AAGT TTATTATATA TTGTATATACTTTTA TERM 870 554585 - 554575 - g 74 -3.2 -5.38951 | AAGCTATAGAAAAAA TAGG GTA CCCA GTGTTCGTAAAACCT ddlB 554190 - 555092 + | D-alanine--D-alanine ligase TERM 871 555157 - 555102 - f 100 -9.6 -4.94168 | opp_overlap 555115, overlap 555115 AGATAATAAAATAAA TTAGAATAAAAAATACTTATAGAT TGTAAGTG ATCTATAAGTATTTTTTATTTGAA TGAAGTTTTTTTCCA TERM 872 555144 - 555115 - f 88 -6.7 -5.59534 | opp_overlap 555115, overlap 555102 AATTAGAATAAAAAA TACTTATAGAT TGTAAGTG ATCTATAAGTA TTTTTTATTTGAATG TERM 873 555115 - 555144 + F 100 -8.1 -5.65927 | opp_overlap 555115 555102 AATTAGAATAAAAAA TACTTATAGATTG TAAG TGATCTATAAGTA TTTTTTATTTGAATG TERM 874 556268 - 556254 - g 76 -3.6 -5.43414 | ATGATAGAGAAAAAA TCAATG AAG CATTAA AAAATATGGGAACTT CLI_0539 555248 - 556390 + | putative high-affinity branched-chain amino acid ABC transporter, amino acid-binding protein CLI_0540 556394 - 557266 + | high-affinity branched-chain amino acid ABC transporter, permease protein CLI_0541 557267 - 558211 + | putative high-affinity branched-chain amino acid ABC transporter, permease protein CLI_0542 558223 - 558960 + | putative high-affinity branched chain amino acid ABC transporter, ATP-binding protein CLI_0543 558962 - 559663 + | putative high-affinity branched chain amino acid ABC transporter, ATP-binding protein CLI_0544 559692 - 560468 + | hypothetical protein TERM 875 560554 - 560601 + F 85 -8.1 -4.69028 | opp_overlap 560557, overlap 560557 AGTATTGCATAATAT AAAGCACTATGTAGATTATTT TAGAGT GAATAATTTATATAGTGCTTA TTTTATATCTATTAT TERM 876 560557 - 560598 + F 100 -9.8 -4.42325 | opp_overlap 560557, overlap 560554 ATTGCATAATATAAA GCACTATGTAGATTATTT TAGAGT GAATAATTTATATAGTGC TTATTTTATATCTAT CLI_0545 560870 - 561628 + | hypothetical protein TERM 877 561848 - 561858 + G 78 -6.8 -4.52857 | opp_overlap 561847 561848 GAAAGCTTAAAACAC CTGC TAT GCAG TTTTCTATACCAGGT CLI_0546 561622 - 562065 + | hypothetical protein TERM 878 563203 - 563193 - g 76 -2.6 -5.54403 | AAAAAAGAATAAAAA TATA CAA TATA TTAAAAGATAATAAC TERM 879 563677 - 563659 - g 100 -10.4 -4.57837 | AGAGTGTTGCAAAAA TGGAGTAA TTT TTACTCCA GGAGACATATTCTAT CLI_0547 562364 - 563815 + | GntR family transcriptional regulator CLI_0548 563876 - 564445 + | hypothetical protein CLI_0549 564455 - 565315 + | beta-propeller domain-containing protein TERM 880 565351 - 565397 + F 93 -13.4 -2.90709 | opp_overlap 565355, overlap 565355 AAAGTATAGTTTTAA TGAAGAGGGTGTCTTAAAAT AGATTTA ATTTTAGGATACCCTCTTTA ATTTCATGATATTAT TERM 881 565393 - 565355 - f 70 -7.6 -3.35371 | opp_overlap 565355 565351 TATAGTTTTAATGAA GAGGGTGTCTTAAAAT AGATTTA ATTTTAGGATACCCTC TTTAATTTCATGATA TERM 882 565355 - 565393 + F 100 -12 -4.11623 | opp_overlap 565355, overlap 565351 TATAGTTTTAATGAA GAGGGTGTCTTAAAAT AGATTTA ATTTTAGGATACCCTC TTTAATTTCATGATA CLI_0550 565479 - 566372 + | NUDIX family hydrolase CLI_0551 566506 - 566988 + | hypothetical protein CLI_0552 567164 - 567688 + | hypothetical protein CLI_0553 567690 - 568280 + | methlytransferase,-like protein TERM 883 568364 - 568312 - T 81 -10.3 -2.53164 | opp_overlap 568316 568317 568322, overlap 568317 568322 TTATGTATGATTAAC CAAAATAAAAGTGTGGAGTAA AAATATAAAAA CTACTCCACACTTTTACTTTA TTTAATTTAATTCAT TERM 884 568316 - 568360 + T 74 -6 -4.63675 | opp_overlap 568312 568317 568322, overlap 568317 568322 GTATGATTAACCAAA ATAAAAGTGTGGAGTA AAAATATAAAAAC TACTCCACACTTTTAC TTTATTTAATTTAAT TERM 885 568317 - 568359 + T 82 -9.5 -3.36578 | opp_overlap 568312 568317 568322, overlap 568316 568322 TATGATTAACCAAAA TAAAAGTGTGGAGTA AAAATATAAAAAC TACTCCACACTTTTA CTTTATTTAATTTAA TERM 886 568359 - 568317 - T 100 -10.2 -4.46615 | opp_overlap 568317 568316 568322, overlap 568312 568322 TATGATTAACCAAAA TAAAAGTGTGGAGTAA AAATATAAAAA CTACTCCACACTTTTA CTTTATTTAATTTAA TERM 887 568354 - 568322 - T 78 -5.7 -5.18643 | opp_overlap 568317 568316 568322, overlap 568317 568312 TTAACCAAAATAAAA GTGTGGAGTAA AAATATAAAAA CTACTCCACAC TTTTACTTTATTTAA CLI_0554 568605 - 568366 - | hypothetical protein CLI_0555 569108 - 568626 - | hypothetical protein TERM 888 569200 - 569236 + H 100 -14.2 -3.92641 | opp_overlap 569187 569206 569221, overlap 569185 569189 569203 569206 TATCTTATTGTATGT CAATAATATATTATTG AATTA CAATAATATATTATTG TTTATAGATAAAATT TERM 889 569203 - 569233 + H 93 -10.1 -4.09117 | opp_overlap 569187 569206 569221, overlap 569185 569189 569200 569206 CTTATTGTATGTCAA TAATATATTATTG AATTA CAATAATATATTA TTGTTTATAGATAAA TERM 890 569206 - 569230 + H 73 -7.4 -4.16305 | opp_overlap 569187 569206 569221, overlap 569185 569189 569203 569200 ATTGTATGTCAATAA TATATTATTG AATTA CAATAATATA TTATTGTTTATAGAT TERM 891 569331 - 569374 + H 70 -7.5 -3.43122 | opp_overlap 569356, overlap 569330 TCTTGGATAACCATT TTCTAAGCTCTAGTAGGAG CAAAAA CTCCTTCTGAAGCTAAGAA CTTTGTTTATTATAA TERM 892 570426 - 570412 - gH 70 -3.5 -5.10497 | opp_overlap 570424, overlap 570424 AAGTTACCTAAAAAA GCCCA ATATA TAGGC CTTGGGCATCTTCAT CLI_0556 569725 - 570954 + | putative nuclease SbcCD, D subunit TERM 893 571330 - 571318 - g 90 -4.9 -5.77988 | AGATATACAAAAAAA TATAG AGT CTATA ATAGGTTTAACAGCA TERM 894 571479 - 571469 - g 72 -4 -5.07053 | AAGTATGGCAAAAAA CTTT TAG AAAG AATAAGAAAAGCAAG TERM 895 574237 - 574249 + G 74 -2 -5.63236 | opp_overlap 574232 574237, overlap 574226 ACAACTAAAAGGAAG TTCT CCTTT AGAA TTTTTCTTTTTAGAT sbcC 570929 - 574459 + | exonuclease SbcC CLI_0558 574494 - 575042 + | NUDIX family hydrolase TERM 896 575095 - 575133 + F 100 -15.8 -6.0427 | opp_overlap 575095 575098 TTTAAATAGAGGAAA TAAGATGTTTCAAAATAA AAT TTATTTTGAAATATCTTA TTTTTTTTGTCTCAT TERM 897 575133 - 575095 - f 100 -13.6 -3.97308 | opp_overlap 575095, overlap 575098 TTTAAATAGAGGAAA TAAGATGTTTCAAAATAA AAT TTATTTTGAAATATCTTA TTTTTTTTGTCTCAT TERM 898 575130 - 575098 - f 100 -10.9 -4.09503 | opp_overlap 575095, overlap 575095 AAATAGAGGAAATAA GATGTTTCAAAATAA AAT TTATTTTGAAATATC TTATTTTTTTTGTCT TERM 899 575325 - 575310 - f 72 -4.8 -5.0917 | CCATCAAAAAAGAAA TGAAAT AAAA ATTTCA TTGGCGTATAATTGG TERM 900 575500 - 575483 - f 78 -4.3 -5.45802 | TTTGTAAAATAAAAA TTTAATT TATG AATTAAA AAAATATAAAAAATA CLI_0559 575871 - 576722 + | hypothetical protein TERM 901 576802 - 576759 - f 100 -16.6 -4.48221 | gap 1, opp_overlap 576759 576762 576765 576784, overlap 576761 576762 TATTAATTGAGAAAA TAGCAAGGGTTTATATTAAAA TTT TTTTAATATAAACCCTTG-TA TTTATATTAAATTAG TERM 902 576759 - 576802 + F 100 -16.6 -4.23794 | gap 1, opp_overlap 576759 576761 576762, overlap 576762 576765 576784 TATTAATTGAGAAAA TAGCAAGGGTTTATATTAAAA TTT TTTTAATATAAACCCTTG-TA TTTATATTAAATTAG TERM 903 576801 - 576761 - f 100 -17.3 -3.84304 | opp_overlap 576759 576762 576765 576784, overlap 576759 576762 TTAATTGAGAAAATA GCAAGGGTTTATATTAAAA TTT TTTTAATATAAACCCTTGT ATTTATATTAAATTA TERM 904 576762 - 576800 + F 100 -20.8 -3.71114 | opp_overlap 576761 576759 576762, overlap 576759 576765 576784 TAATTGAGAAAATAG CAAGGGTTTATATTAAAA TTT TTTTAATATAAACCCTTG TATTTATATTAAATT TERM 905 576800 - 576762 - f 100 -20.8 -2.89859 | opp_overlap 576762 576759 576765 576784, overlap 576761 576759 TAATTGAGAAAATAG CAAGGGTTTATATTAAAA TTT TTTTAATATAAACCCTTG TATTTATATTAAATT TERM 906 576765 - 576797 + F 100 -16.7 -3.97022 | opp_overlap 576762 576761 576759, overlap 576762 576759 576784 TTGAGAAAATAGCAA GGGTTTATATTAAAA TTT TTTTAATATAAACCC TTGTATTTATATTAA CLI_0560 577188 - 577553 + | putative cadmium resistance transcriptional regulator CadC cadA-1 577629 - 579857 + | cadmium-translocating P-type ATPase TERM 907 580208 - 580198 - f 72 -4 -5.36689 | overlap 580203 AAATTAAAAACAAAA GAAA ATA TTTC TAAAAAATATTGACT TERM 908 580356 - 580397 + F 100 -14.9 -3.84719 | opp_overlap 580364, overlap 580364 AGGAGCTACCAGATT TGAAGAAATACTGTAAACA GTGA TGTTTACAGTATTTTTTTA TTTAAATTTAAAAAT TERM 909 580364 - 580389 + F 100 -12.1 -5.96894 | opp_overlap 580364, overlap 580356 CCAGATTTGAAGAAA TACTGTAAACA GTGA TGTTTACAGTA TTTTTTTATTTAAAT TERM 910 580389 - 580364 - f 100 -12.1 -4.19678 | opp_overlap 580356 580364 CCAGATTTGAAGAAA TACTGTAAACA GTGA TGTTTACAGTA TTTTTTTATTTAAAT TERM 911 580596 - 580550 - f 75 -9.2 -2.68823 | opp_overlap 580550 580552 580555, overlap 580549 580552 580555 TTCCCTTTAGATAAT TATAAGGCTATTAAATCA GTAGAGATAGA TAATTTAATAGCCTTATA TAATTTAAGTCCTTC TERM 912 580859 - 580899 + F 100 -13 -4.97461 | opp_overlap 580871 580892 TTAAGAGGTGATGTA TAGTTTTATTAAGCAGTA TAATT TACTACTTAATAAAACTA TTTTTACTATTTATT TERM 913 580973 - 580998 + F 84 -4.8 -5.63517 | TATTTTTATTTAAAA GGATTTCTAT TGATAT ATAGAGGTCC TTTTTTATTTAAAAG TERM 914 581489 - 581475 - g 71 -8.6 -2.8076 | overlap 581472 AAGTAGTATTAATTA CAAAGG ATA CCTTTG AGAGGATAAAGGCGG CLI_0563 581114 - 582490 + | PhoH family protein TERM 915 582507 - 582553 + F 100 -17.6 -4.5954 | opp_overlap 582508 582511 582526, overlap 582509 TTTATACTATATGTA AGTAGAGGGCACCTCAAAAT CAAATAT ATTTTGAGGTGCCCTCTATA TTTTATGTGATATAA TERM 916 582552 - 582508 - f 100 -18.9 -3.1544 | opp_overlap 582507 582509, overlap 582511 582526 TTATACTATATGTAA GTAGAGGGCACCTCAAAAT CAAATAT ATTTTGAGGTGCCCTCTAT ATTTTATGTGATATA TERM 917 582509 - 582551 + F 100 -22.4 -3.90416 | opp_overlap 582508 582511 582526, overlap 582507 TATACTATATGTAAG TAGAGGGCACCTCAAAAT CAAATAT ATTTTGAGGTGCCCTCTA TATTTTATGTGATAT TERM 918 582549 - 582511 - f 100 -20.6 -2.77658 | opp_overlap 582509 582507, overlap 582508 582526 TACTATATGTAAGTA GAGGGCACCTCAAAAT CAAATAT ATTTTGAGGTGCCCTC TATATTTTATGTGAT CLI_0564 582758 - 583762 + | hypothetical protein CLI_0565 583772 - 584788 + | hypothetical protein TERM 919 584891 - 584847 - f 95 -10.2 -4.30987 | opp_overlap 584850, overlap 584848 584849 ATTGGGTATAATAAA TTTGAGGTTGTCTCAAAATA AAATA TATTTTGAGACAACCTCTTT TGTATAATTCTATTG TERM 920 584890 - 584848 - f 100 -13.7 -3.1811 | opp_overlap 584850, overlap 584847 584849 TTGGGTATAATAAAT TTGAGGTTGTCTCAAAATA AAATA TATTTTGAGACAACCTCTT TTGTATAATTCTATT TERM 921 584889 - 584849 - f 100 -17.2 -2.50545 | opp_overlap 584850, overlap 584848 584847 TGGGTATAATAAATT TGAGGTTGTCTCAAAATA AAATA TATTTTGAGACAACCTCT TTTGTATAATTCTAT TERM 922 584850 - 584888 + F 100 -20.7 -4.63007 | opp_overlap 584849 584848 584847 GGGTATAATAAATTT GAGGTTGTCTCAAAATA AAATA TATTTTGAGACAACCTC TTTTGTATAATTCTA CLI_0566 585110 - 585283 + | hypothetical protein TERM 923 586152 - 586162 + G 78 -4 -5.4492 | overlap 586127 AAATGCTGAGAATGC CAAT CTA ATTG TTTTTTATGTATATA sagB 585448 - 586404 + | streptolysin associated protein SagB TERM 924 586952 - 586942 - g 89 -4 -5.93809 | GCCCTAGAAAAAAAA TCTA ATA TAGA GAATATAAAAAATCA sagC 586408 - 587490 + | streptolysin associated protein SagC sagD 587506 - 588864 + | streptolysin associated protein SagD CLI_0570 588839 - 589477 + | CAAX amino terminal protease family protein TERM 925 589627 - 589645 + G 70 -8.9 -2.50622 | opp_overlap 589629, overlap 589626 589629 GAGCTATAGGGACAT CACCAAC TAATT GTTGGTG CTTAATGAAATATGT CLI_0571 589485 - 590213 + | hypothetical protein TERM 926 590555 - 590545 - g 88 -4 -5.72622 | TGTAGAAATAAAAAA TCTT GAA AAGA AATTTAAGAATAATA sagG 590522 - 591454 + | ABC transporter, ATP-binding protein SagG sagH 591466 - 592590 + | ABC transporter, ATP-binding/permease protein SagH sagI 592592 - 593734 + | drug ABC tranporter, ATP-binding/permease protein TERM 927 593735 - 593716 - f 73 -6.6 -4.37013 | overlap 593725 AACTAAGGATGAAAA CTTAAAAA GTAT TTTTTAAG ATACAAAAAATAAAT CLI_0575 593978 - 594628 + | putative metalloprotease TERM 928 594695 - 594723 + T 85 -6.1 -5.54264 | ATTAAACTAGAAAAA GGTGATTTTTGTA TTG TACAGAGGTCATC TTTTTTTACATATTT TERM 929 594976 - 595011 + T 71 -7 -3.90082 | opp_overlap 594976 TTTAAATATAAAAAA GTCTAGGAACATGTCT TAAA AAATATATTCCTAGAC TTTAATAGTTTACTA TERM 930 595011 - 594976 - T 100 -9.2 -5.56264 | opp_overlap 594976 TTTAAATATAAAAAA GTCTAGGAACATGTCT TAAA AAATATATTCCTAGAC TTTAATAGTTTACTA CLI_0576 595564 - 595094 - | hypothetical protein CLI_0577 596944 - 595682 - | arsenical pump family protein TERM 931 596872 - 596856 - G 76 -10.1 -2.83732 | overlap 596853 596851 ATAAGCATAATAGCA GCTCCGC CTA GCGAAGC AACAACCCTGTTTAC CLI_0578 598387 - 597071 - | hypothetical protein TERM 932 597718 - 597734 + g 71 -6.7 -3.92799 | opp_overlap 597721, overlap 597690 597715 597721 TATTGGATTTTTTAG TAATACT TTT AGTATTA TATTTATTATTTGTT TERM 933 597991 - 598030 + g 93 -10.5 -3.87638 | opp_overlap 598024, overlap 598024 CATTTTTTTCATGAT TTTTTAGTAAATTATTT GTATAG AAATAATTTACTAAAGA TTCTTCATTAGTTTG trmB 598663 - 599316 + | tRNA (guanine-N(7))-methyltransferase CLI_0580 599529 - 599792 + | hypothetical protein TERM 934 599860 - 599815 - T 100 -13.1 -3.9122 | gap 1, opp_overlap 599815 599817 599823, overlap 599823 CATTCTTTTAAATAA TATTAAAACAGGTATTTCTATA AAT TA-AGGAATACCTGTTTTAATA TATCTCTAAATAAAT TERM 935 599815 - 599860 + T 100 -15.3 -3.01119 | gap 1, opp_overlap 599815 599823, overlap 599817 599823 CATTCTTTTAAATAA TATTAAAACAGGTATTTCTATA AAT TA-AGGAATACCTGTTTTAATA TATCTCTAAATAAAT TERM 936 599817 - 599858 + T 95 -13.5 -3.05993 | gap 1, opp_overlap 599815 599823, overlap 599815 599823 TTCTTTTAAATAATA TTAAAACAGGTATTTCTATA AAT TA-AGGAATACCTGTTTTAA TATATCTCTAAATAA TERM 937 599823 - 599852 + T 82 -8.1 -4.41956 | gap 1, opp_overlap 599815 599823, overlap 599817 599815 TAAATAATATTAAAA CAGGTATTTCTATA AAT TA-AGGAATACCTG TTTTAATATATCTCT TERM 938 599852 - 599823 - T 72 -5.9 -4.52347 | gap 1, opp_overlap 599823 599817 599815, overlap 599815 TAAATAATATTAAAA CAGGTATTTCTATA AAT TA-AGGAATACCTG TTTTAATATATCTCT CLI_0581 600381 - 599887 - | putative thiol peroxidase fabG-1 600752 - 601495 + | 3-ketoacyl-(acyl-carrier-protein) reductase CLI_0583 601559 - 602512 + | response regulator TERM 939 602602 - 602557 - T 72 -6.2 -4.52101 | gap 1, opp_overlap 602565, overlap 602565 AAGAAGTAAGCAAAA GAAGGAAAGGCCC-CCAGCAA TTATT TTGCAGGTAGGCCTTTTATTC ATACTAAGATCTACT TERM 940 602594 - 602565 - T 73 -6.4 -4.21737 | gap 1, opp_overlap 602565, overlap 602557 AGCAAAAGAAGGAAA GGCCC-CCAGCAA TTATT TTGCAGGTAGGCC TTTTATTCATACTAA TERM 941 602760 - 602812 + T 100 -13 -4.05322 | gap 1, opp_overlap 602770, overlap 602762 602763 AACTCCTAAGAGGGT CTG-TTAATAAGCTTTAGAGGGAGT AAAA ACTCCCTCTAAAGCTTAGAAATCTG TTTATATAAAAGTTT TERM 942 602762 - 602810 + T 100 -14.2 -3.615 | gap 1, opp_overlap 602770, overlap 602760 602763 CTCCTAAGAGGGTCT G-TTAATAAGCTTTAGAGGGAGT AAAA ACTCCCTCTAAAGCTTAGAAATC TGTTTATATAAAAGT TERM 943 602763 - 602808 + T 100 -17.9 -3.38294 | opp_overlap 602770, overlap 602762 602760 TCCTAAGAGGGTCTG TTAATAAGCTTTAGAGGGAGT AAAA ACTCCCTCTAAAGCTTAGAAA TCTGTTTATATAAAA TERM 944 602801 - 602770 - T 100 -20.4 -3.61517 | opp_overlap 602763 602762 602760 AGGGTCTGTTAATAA GCTTTAGAGGGAGT AAAA ACTCCCTCTAAAGC TTAGAAATCTGTTTA CLI_0584 605229 - 602833 - | cell wall-associated hydrolase TERM 945 605368 - 605344 - H 73 -8.8 -2.82897 | opp_overlap 605342, overlap 605341 605346 AATAATAATATACCA TATTTTGGAA TAAAG TTCCAAAATA CACTTCATATACTAT TERM 946 605490 - 605480 - H 72 -4 -5.3321 | opp_overlap 605480 AATCAATAACAAAAA GTTT CAC AAAC ATTAATAGAATTTAA CLI_0585 605538 - 606482 + | alpha/beta fold family hydrolase TERM 947 606494 - 606535 + F 100 -22.1 -5.56568 | opp_overlap 606496 606508 GTAAATGGTGTTTAA TATGTGGTTAGAAAGATAT TTTA ATATCTTTCTAACCACATA TTTTTTTAATAATAT TERM 948 606533 - 606496 - f 100 -20.3 -3.0264 | opp_overlap 606494, overlap 606508 AAATGGTGTTTAATA TGTGGTTAGAAAGATAT TTTA ATATCTTTCTAACCACA TATTTTTTTAATAAT CLI_0586 606744 - 607991 + | response regulator TERM 949 608204 - 608245 + F 100 -19.2 -5.35224 | opp_overlap 608204 608209 608214 ATTTAGCTAGATATA GCCAACATAATTAGTTTA AATATG TAAACTAATTATGTTGGC TTTTGTTTTTATAAA TERM 950 608245 - 608204 - f 100 -19.2 -3.01119 | opp_overlap 608204, overlap 608209 608214 ATTTAGCTAGATATA GCCAACATAATTAGTTTA AATATG TAAACTAATTATGTTGGC TTTTGTTTTTATAAA TERM 951 608240 - 608209 - f 87 -10.5 -3.17797 | opp_overlap 608204, overlap 608204 608214 GCTAGATATAGCCAA CATAATTAGTTTA AATATG TAAACTAATTATG TTGGCTTTTGTTTTT CLI_0587 608288 - 608872 + | HDIG domain-containing protein TERM 952 609946 - 609933 - g 70 -3.9 -5.10064 | TTTAACATATAAAAA TTCTA TTAA TAGAA AAGATGAATTTGGGG CLI_0588 608908 - 610938 + | methyl-accepting chemotaxis protein TERM 953 611008 - 610956 - f 95 -9.7 -4.77867 | opp_overlap 610962 610966 611003, overlap 610960 610962 ATATATAATATAAAA TTAAGATAAAGTTATAAACAATA TTTTATG TATTGTTTATAACTTTATTTTTA CAAAAAAATTGAATA TERM 954 611004 - 610960 - f 91 -10.5 -3.83346 | opp_overlap 610962 610966 611003, overlap 610956 610962 ATAATATAAAATTAA GATAAAGTTATAAACAATA TTTTATG TATTGTTTATAACTTTATT TTTACAAAAAAATTG TERM 955 611002 - 610962 - f 100 -13.1 -3.47916 | opp_overlap 610962 610966, overlap 610960 610956 AATATAAAATTAAGA TAAAGTTATAAACAATA TTTTATG TATTGTTTATAACTTTA TTTTTACAAAAAAAT TERM 956 610962 - 611002 + F 100 -13.8 -4.56775 | opp_overlap 610962 610960 610956, overlap 610966 AATATAAAATTAAGA TAAAGTTATAAACAATAT TTTAT GTATTGTTTATAACTTTA TTTTTACAAAAAAAT TERM 957 610966 - 610998 + F 100 -10.2 -4.85782 | opp_overlap 610962 610960 610956, overlap 610962 TAAAATTAAGATAAA GTTATAAACAATAT TTTAT GTATTGTTTATAAC TTTATTTTTACAAAA TERM 958 611509 - 611495 - g 75 -5.8 -4.80417 | TAGAAAAAGAAGAAA TTATAG AAG CTATAA AAAATGTACTAAAAA CLI_0589 611143 - 611937 + | response regulator CLI_0590 612279 - 612154 - | hypothetical protein TERM 959 612437 - 612406 - H 100 -11.2 -5.31519 | ATATTGAAAGAAAAA TTTACAAGTAAAAA CAAG TTTTCACTTGTAAA AAAGCATAGAGGAAT TERM 960 612678 - 612709 + H 100 -8.8 -5.86976 | GTGGCAACGCGGATA CTTCCGTCCCATAT TTAT ATATGAGATGGGAG TTTTTTATTTTATGG serS-2 612770 - 614047 + | seryl-tRNA synthetase TERM 961 614660 - 614640 - f 82 -9.9 -3.06302 | opp_overlap 614637, overlap 614642 ATTATTTTCATTTAA TATTATAGG AAA CCTATAATA AAATATATACATATA TERM 962 614658 - 614642 - f 71 -8.1 -3.08996 | opp_overlap 614637, overlap 614640 TATTTTCATTTAATA TTATAGG AAA CCTATAA TAAAATATATACATA TERM 963 616191 - 616162 - g 78 -6.7 -4.5538 | gap 1, opp_overlap 616172 AGAAAAGCCAGAAAA GCTGCAAATATTAT TAA ATAAT-TTTACAGC AGAGATTGAAGTGCT CLI_0592 614804 - 617158 + | putative ATP-dependent helicase CLI_0593 617640 - 617449 - | hypothetical protein CLI_0594 618754 - 618134 - | GntR family transcriptional regulator TERM 964 618950 - 618926 - H 75 -8.8 -3.13728 | opp_overlap 618929, overlap 618929 ATTAGTGATATTTAA CAACTTTATA TATGC TATAAAGTTG TAACTATAATAAATA ceo 619009 - 619962 + | N(5)-(carboxyethyl)ornithine synthase TERM 965 620093 - 620140 + T 84 -9.4 -3.75378 | opp_overlap 620093 620100, overlap 620100 TACGGAGTATAAGAA TATAAAAGACCACTTGTATGTT TATA AAAAAGCAAGTGGTCTTTTTTA TTATATTATAAAAGT TERM 966 620140 - 620093 - T 71 -7.2 -3.8512 | opp_overlap 620093 620100, overlap 620100 TACGGAGTATAAGAA TATAAAAGACCACTTGTATGTT TATA AAAAAGCAAGTGGTCTTTTTTA TTATATTATAAAAGT TERM 967 620133 - 620100 - T 73 -5.3 -4.82162 | opp_overlap 620100 620093, overlap 620093 TATAAGAATATAAAA GACCACTTGTATGTT TATA AAAAAGCAAGTGGTC TTTTTTATTATATTA TERM 968 620100 - 620133 + T 100 -7.5 -5.64304 | opp_overlap 620093 620100, overlap 620093 TATAAGAATATAAAA GACCACTTGTATGTT TATA AAAAAGCAAGTGGTC TTTTTTATTATATTA CLI_0596 622172 - 620166 - | fructose-1,6-bisphosphatase CLI_0597 622456 - 622818 + | hypothetical protein CLI_0598 623019 - 623432 + | hemerythrin-like metal-binding domain-containing protein TERM 969 623454 - 623438 - T 73 -3.1 -5.59357 | overlap 623441 AGTATATTAAAAAAA TCATATA TTT TATATAA ATATTAATTAAAATA CLI_0599 624341 - 623646 - | hypothetical protein TERM 970 623829 - 623783 - G 73 -9 -3.21416 | opp_overlap 623783 623781 623785 TATTTTTATCAGGAA TCTTAGTATGGATTCTTTTATA TGT TTTCAAAGAATCCATACCAATA TATTCTGCAAAACTT TERM 971 623785 - 623827 + g 76 -9.4 -3.17146 | opp_overlap 623783, overlap 623783 623781 TTTTTATCAGGAATC TTAGTATGGATTCTTTTATA TGT TTTCAAAGAATCCATACCAA TATATTCTGCAAAAC TERM 972 624470 - 624496 + H 73 -4.6 -5.22481 | opp_overlap 624464 624463 624470 624471 624490, overlap 624464 624471 624490 TTTTAAAACCAAAGA TTCTTTGTTTAA GTA TTAAATAAAGAC TTTTCTTTATTTCTA TERM 973 624471 - 624495 + H 76 -8.1 -3.71049 | opp_overlap 624464 624463 624471 624470 624490, overlap 624464 624470 624490 TTTAAAACCAAAGAT TCTTTGTTTAA GTA TTAAATAAAGA CTTTTCTTTATTTCT TERM 974 624701 - 624726 + H 81 -10.5 -2.6027 | opp_overlap 624703 624718 624719 AGATTATATCTAAAA AACTCCCACTT ATAT AAGTGGGAGTA TAAGTTCACTTTTAC TERM 975 624724 - 624703 - H 100 -13.1 -5.13473 | opp_overlap 624701, overlap 624718 624719 ATTATATCTAAAAAA CTCCCACTT ATAT AAGTGGGAG TATAAGTTCACTTTT TERM 976 625337 - 625292 - g 73 -5.9 -4.64048 | gap 1, opp_overlap 625309, overlap 625295 625296 GAGTAGATAAAGAAA TTAGCGTATTTCTAAAATATAA AGA TTATATTTTAGAAATA-GAAAA AATGGATCCATATGA TERM 977 625333 - 625296 - g 82 -11.1 -2.53379 | gap 1, opp_overlap 625309, overlap 625295 625292 AGATAAAGAAATTAG CGTATTTCTAAAATATAA AGA TTATATTTTAGAAATA-G AAAAAATGGATCCAT TERM 978 625356 - 625340 - g 90 -6.6 -5.59879 | TAGAAATAGAAAAAA TGGATC CATAT GATCCA TTAAAAAAAACTTGT TERM 979 625414 - 625393 - g 75 -4.5 -5.02715 | opp_overlap 625393 ACAGGAAATGAAAAA CTAAATCTA ATAT TAGAGTTAG TAAGTTTAAAACCAT CLI_0600 625093 - 625515 + | hypothetical protein TERM 980 625537 - 625562 + T 100 -9.9 -5.47159 | gap 1 TAAATTGTTTTTATA CTGCTGATCAAA TCT TTTG-TCAGCAG TTTTTTATATTGCAA CLI_0601 626399 - 625749 - | Fe/Mn family superoxide dismutase CLI_0602 626591 - 627430 + | metallo-beta-lactamase family protein TERM 981 627429 - 627480 + T 100 -9.3 -4.94992 | gap 2, opp_overlap 627432, overlap 627432 ATATATTAGAAATAT AAAGCTATAGGAATAGAT--ATTAA GCTT TTAATTTATCTATTCCTATAGCTTA TTTTTATACCTTTAA TERM 982 627432 - 627477 + T 100 -11 -4.55383 | gap 2, opp_overlap 627432, overlap 627429 TATTAGAAATATAAA GCTATAGGAATAGAT--ATTAA GCTT TTAATTTATCTATTCCTATAGC TTATTTTTATACCTT TERM 983 627477 - 627432 - T 100 -11 -4.41609 | gap 2, opp_overlap 627429 627432 TATTAGAAATATAAA GCTATAGGAATAGAT--ATTAA GCTT TTAATTTATCTATTCCTATAGC TTATTTTTATACCTT CLI_0603 627827 - 627528 - | hypothetical protein CLI_0604 629828 - 627975 - | hypothetical protein TERM 984 628610 - 628622 + g 85 -4.8 -5.63012 | CATTAATAATAGATC GGCT TCTCC AGCC TTTTTCTTTATTTTT TERM 985 629382 - 629358 - G 73 -8.7 -3.20832 | overlap 629357 629359 TCTTAAATTTAAAAT TGTCAGTATTA TTA TAATACTGACT GCCAATATAATCTTA TERM 986 629381 - 629359 - G 100 -12.2 -2.52017 | overlap 629358 629357 CTTAAATTTAAAATT GTCAGTATTA TTA TAATACTGAC TGCCAATATAATCTT TERM 987 629461 - 629429 - G 70 -8.6 -2.72036 | gap 1, opp_overlap 629453, overlap 629438 GAAAGGCAGATATTA TTGCAGCAA-CTCCA GCGC TGGAGCTTACCGCAA CGGTTAATATATAAT TERM 988 629898 - 629864 - R 73 -3 -5.69976 | opp_overlap 629877 ATAAAAAAAATAAAA TCTTCTTTTTAAATAT ATA ATATATTATAAGAAGA CCAATGTAATTTATT CLI_0605 631486 - 631022 - | AsnC family transcriptional regulator TERM 989 631832 - 631844 + H 70 -3.5 -5.39905 | opp_overlap 631788, overlap 631789 631840 ATTATTTACAATCTC TTTTA TGT TAAAA TTTTTATTCTTTAAT TERM 990 631859 - 631875 + H 73 -5.3 -4.79752 | opp_overlap 631861, overlap 631856 631872 ATTTTTATTCTTTAA TATAATA TGT TATTATA TTTTATATTGTTACA TERM 991 631905 - 631946 + H 72 -8.5 -3.26546 | opp_overlap 631907, overlap 631876 631903 631907 631911 631917 631937 ATATTTATAATATAA AATTAATATAAATATTTTT AAGT AAAAGTATTTATATTAATA TCTTGATATATTATA TERM 992 631944 - 631907 - H 93 -8.9 -4.74285 | opp_overlap 631905 631903 631907 631911 631917 631937 ATTTATAATATAAAA TTAATATAAATATTTTT AAGT AAAAGTATTTATATTAA TATCTTGATATATTA TERM 993 631907 - 631944 + H 90 -11.1 -3.186 | opp_overlap 631907, overlap 631905 631903 631911 631917 631937 ATTTATAATATAAAA TTAATATAAATATTTTT AAGT AAAAGTATTTATATTAA TATCTTGATATATTA TERM 994 631911 - 631940 + H 70 -7.5 -3.39353 | opp_overlap 631907, overlap 631907 631905 631903 631917 631937 ATAATATAAAATTAA TATAAATATTTTT AAGT AAAAGTATTTATA TTAATATCTTGATAT CLI_0606 632011 - 632385 + | hypothetical protein TERM 995 632410 - 632441 + F 91 -7.4 -5.56112 | opp_overlap 632410 AGTTTCATATAAAAA CACACTAAAATCTA GTTT TAGAGGTTAGTGTG TTTTTTAGTTTTTAT TERM 996 632441 - 632410 - f 83 -7.4 -4.9725 | opp_overlap 632410 AGTTTCATATAAAAA CACACTAAAATCTA GTTT TAGAGGTTAGTGTG TTTTTTAGTTTTTAT TERM 997 632865 - 632844 - f 80 -3.2 -5.83822 | opp_overlap 632835 GAGATTTAAAAAAAA TATTTTTT ATTTCA AAAAAATA TATAAAAACTTAGTA CLI_0607 633009 - 634382 + | amino acid permease family protein TERM 998 634512 - 634549 + F 100 -11.7 -4.8048 | gap 1, opp_overlap 634512 ATTAAGGAACAAAAA GCTATGAATTTTGGAATA TAA TATTCTAAA-TTCATAGC TTTTTACTCTAAAAA TERM 999 634549 - 634512 - f 100 -9.5 -5.20534 | gap 1, opp_overlap 634512 ATTAAGGAACAAAAA GCTATGAATTTTGGAATA TAA TATTCTAAA-TTCATAGC TTTTTACTCTAAAAA TERM 1000 634978 - 634990 + G 71 -4.9 -4.6902 | TTGGATTATAACTGG TATAG GTT CTATA TTTTTAGCATTGTCC CLI_0608 634820 - 636169 + | amino acid permease family protein TERM 1001 636247 - 636266 + F 93 -10 -4.18401 | opp_overlap 636246 636247 TAGATTTATTGAAAG CCCTGTGC AAAT GTACAGGG TTTTAGAATCTATAA CLI_0609 636517 - 637026 + | hexapeptide repeat-containing transferase TERM 1002 637103 - 637084 - g 76 -2.8 -5.50723 | TTATGAAAATAAAAA CACCTAGA ACTT TCTTAGTG TTTATTGCTGTAGTA CLI_0610 637071 - 637943 + | metallo-beta-lactamase family protein TERM 1003 638097 - 638149 + T 93 -10 -3.88985 | gap 1, opp_overlap 638097 638098 638100, overlap 638098 638101 638148 TATATCCCTGGATAA C-GATTTCTAAGCTTTAGTGGGAGT AAAA ACTCCCTCTAAAGCCAAGAACTCTG TTTATGAAGCATTTT TERM 1004 638148 - 638097 - T 95 -12.4 -3.29829 | opp_overlap 638097 638098 638101, overlap 638098 638100 TATATCCCTGGATAA CGATTTCTAAGCTTTAGTGGGAGT AAAA ACTCCCTCTAAAGCCAAGAACTCT GTTTATGAAGCATTT TERM 1005 638098 - 638147 + T 100 -13.7 -3.52678 | opp_overlap 638097 638098 638100, overlap 638097 638101 ATATCCCTGGATAAC GATTTCTAAGCTTTAGTGGGAGT AAAA ACTCCCTCTAAAGCCAAGAACTC TGTTTATGAAGCATT TERM 1006 638147 - 638098 - T 100 -15.9 -2.57683 | opp_overlap 638098 638097 638101, overlap 638097 638100 ATATCCCTGGATAAC GATTTCTAAGCTTTAGTGGGAGT AAAA ACTCCCTCTAAAGCCAAGAACTC TGTTTATGAAGCATT TERM 1007 638145 - 638100 - T 91 -12.7 -2.82742 | opp_overlap 638098 638097 638101, overlap 638098 638097 ATCCCTGGATAACGA TTTCTAAGCTTTAGTGGGAGT AAAA ACTCCCTCTAAAGCCAAGAAC TCTGTTTATGAAGCA TERM 1008 638101 - 638144 + T 100 -14 -2.59797 | opp_overlap 638100 638098 638097, overlap 638098 638097 TCCCTGGATAACGAT TTCTAAGCTTTAGTGGGAGT AAAA ACTCCCTCTAAAGCCAAGAA CTCTGTTTATGAAGC TERM 1009 638148 - 638160 + T 73 -2.7 -5.72616 | overlap 638097 TAAAGCCAAGAACTC TGTTT ATG AAGCA TTTTTTTATCTAGGT CLI_0611 640825 - 638207 - | calcium-translocating P-type ATPase, PMCA-type TERM 1010 639101 - 639079 - G 78 -6.4 -4.74132 | opp_overlap 639078 639079 ATACTCTAGCAAAAA CTCTTAAATT TTC AATTTTAGAG CTTAATTCTGTATCT TERM 1011 640968 - 640935 - R 100 -17.7 -5.38054 | opp_overlap 640937 TTTTATAAATAAAAA GACCTTTGCCCTATA TTTA TATAGGACAAAGGTC TTGCAATCTCTTAAA TERM 1012 640937 - 640966 + r 90 -12.3 -3.09648 | opp_overlap 640935 TTATAAATAAAAAGA CCTTTGCCCTATA TTTA TATAGGACAAAGG TCTTGCAATCTCTTA CLI_0612 641655 - 641119 - | chromate transporter protein CLI_0613 642191 - 641655 - | chromate transport protein CLI_0614 642365 - 642955 + | PemK family protein TERM 1013 643006 - 642968 - f 78 -4.4 -5.48213 | gap 1, opp_overlap 642968 642978 642994, overlap 642994 TAGTTAAAACAAAAA TTATAAAGAATTTAATA AAAAAA TATTAAATT-TTTATAA ATTTATGTTGTATAA TERM 1014 643163 - 643181 + F 100 -10.4 -5.42514 | opp_overlap 643162 643165 TATAACATATCATAG GACTGATT CTA AATCAGTC TTTTTTGGTTTATAA TERM 1015 643228 - 643256 + F 77 -3.3 -5.65678 | overlap 643254 AGTAATTTTTTGTAA GTATTAAATTTAT AGT GTATATTTAGTAC TTTTTTATATTTTAT CLI_0615 643402 - 643827 + | hypothetical protein TERM 1016 643844 - 643863 + T 75 -5.8 -4.9448 | TTAATTATTATTTAT CATTTTCT AAAT AGAAAGTG TTTTATTTAATAAAT TERM 1017 643874 - 643929 + T 100 -21.3 -3.95036 | opp_overlap 643874 643878 643890, overlap 643878 643890 AAGTGTTTTATTTAA TAAATAGACATAAAAATTATTAAAT CATTGA ATTTAATAATTTTTATGTCTATTTA TTATTTAGGCTAGTT TERM 1018 643929 - 643874 - T 100 -22 -3.05715 | opp_overlap 643874 643878 643890, overlap 643878 643890 AAGTGTTTTATTTAA TAAATAGACATAAAAATTATTAAATC ATTG AATTTAATAATTTTTATGTCTATTTA TTATTTAGGCTAGTT TERM 1019 643925 - 643878 - T 100 -18.4 -4.20516 | opp_overlap 643874 643878 643890, overlap 643874 643890 GTTTTATTTAATAAA TAGACATAAAAATTATTAAATC ATTG AATTTAATAATTTTTATGTCTA TTTATTATTTAGGCT TERM 1020 643878 - 643925 + T 100 -17.7 -4.57581 | opp_overlap 643878 643874 643890, overlap 643874 643890 GTTTTATTTAATAAA TAGACATAAAAATTATTAAAT CATTGA ATTTAATAATTTTTATGTCTA TTTATTATTTAGGCT TERM 1021 643890 - 643913 + T 70 -4.1 -5.1104 | opp_overlap 643878 643874 643890, overlap 643878 643874 AAATAGACATAAAAA TTATTAAAT CATTGA ATTTAATAA TTTTTATGTCTATTT TERM 1022 643913 - 643890 - T 74 -4.8 -5.1104 | opp_overlap 643890 643878 643874, overlap 643878 643874 AAATAGACATAAAAA TTATTAAATC ATTG AATTTAATAA TTTTTATGTCTATTT TERM 1023 643989 - 643956 - T 72 -7.7 -3.61603 | gap 1, opp_overlap 643957 643958, overlap 643954 643952 643958 AGTTATAAAAATAGA TAGTGTCTCAAAATTA AAT TTATTTTGAGACAC-A TTATTAAATTTCAAA TERM 1024 643957 - 643989 + T 84 -9.3 -3.77832 | opp_overlap 643956 643954 643952 643958, overlap 643958 GTTATAAAAATAGAT AGTGTCTCAAAATTA AAT TTATTTTGAGACACA TTATTAAATTTCAAA TERM 1025 643958 - 643988 + T 91 -12.8 -2.86217 | opp_overlap 643956 643954 643952 643958, overlap 643957 TTATAAAAATAGATA GTGTCTCAAAATTA AAT TTATTTTGAGACAC ATTATTAAATTTCAA TERM 1026 643988 - 643958 - T 95 -12.8 -3.37205 | opp_overlap 643958 643957, overlap 643956 643954 643952 TTATAAAAATAGATA GTGTCTCAAAATTA AAT TTATTTTGAGACAC ATTATTAAATTTCAA nadE 645948 - 644032 - | NAD synthetase TERM 1027 646229 - 646247 + G 78 -3 -5.5454 | TGCTGCTTTGCTGTT GGATCTTG CTA CTAGTTCC TTTTTATTTGTTTGG TERM 1028 646592 - 646572 - g 70 -5.5 -4.33767 | overlap 646574 ATAAATTCAGTAAAA GGTAACAAA ATT TTTGTTAAC AAGGTAGAGGAGGAA CLI_0617 646170 - 646610 + | hypothetical protein TERM 1029 646746 - 646761 + G 79 -7.6 -4.19879 | overlap 646737 CTCTAGAGCCAGGTT GGCATA TAAT TATGCC TTTTGCGGATTTTGT CLI_0618 646613 - 647551 + | SPFH domain-containing protein/band 7 family protein TERM 1030 647593 - 647553 - f 81 -7.1 -4.77442 | opp_overlap 647556 647558, overlap 647556 647558 AAGATAATAAATAAA GAAGATCCATAGATTTG ATTTACA CAAATCTATGGATGTTT TTTTATCTAACAATT TERM 1031 647556 - 647590 + F 100 -8.8 -5.71712 | opp_overlap 647553 647556 647558, overlap 647558 ATAATAAATAAAGAA GATCCATAGATTTG ATTTACA CAAATCTATGGATG TTTTTTTATCTAACA TERM 1032 647590 - 647556 - f 86 -8.8 -4.45024 | opp_overlap 647556 647558, overlap 647553 647558 ATAATAAATAAAGAA GATCCATAGATTTG ATTTACA CAAATCTATGGATG TTTTTTTATCTAACA TERM 1033 647588 - 647558 - f 95 -11.4 -3.79677 | opp_overlap 647556 647558, overlap 647556 647553 AATAAATAAAGAAGA TCCATAGATTTG ATTTACA CAAATCTATGGA TGTTTTTTTATCTAA TERM 1034 647558 - 647588 + F 100 -11.4 -4.50122 | opp_overlap 647558 647556 647553, overlap 647556 AATAAATAAAGAAGA TCCATAGATTTG ATTTACA CAAATCTATGGA TGTTTTTTTATCTAA TERM 1035 647633 - 647648 + F 72 -7.6 -3.51879 | opp_overlap 647632 647630 647633 647635, overlap 647630 AATTAGAGGAAATAT TATGGG ATAT CCCATA TATTATTGTGATATA CLI_0619 647913 - 648320 + | CAAX amino terminal protease family protein pepP 648942 - 650177 + | xaa-pro aminopeptidase TERM 1036 650579 - 650569 - T 71 -6.8 -4.11216 | opp_overlap 650569 TCTGTACTCTGAAAA GTGC GTC GCAC TTTCCTTAGAGGGTG CLI_0621 651051 - 650602 - | hypothetical protein TERM 1037 651128 - 651151 + r 88 -4.8 -5.82036 | opp_overlap 651128 651146, overlap 651129 651146 GTTGTATTGAAATAT TTTTTATTAT GTAT ATAATAAAAG TTTTTTATTTATTAT TERM 1038 651270 - 651296 + r 72 -3.8 -5.2853 | opp_overlap 651270 ATAAGGCTAAAAAAG TCAGTAGC TCTATTATTAT GCTACTGA TTTTGTTTTTAAATA TERM 1039 651391 - 651352 - R 100 -14.8 -3.75461 | opp_overlap 651360 CAAATGTGTATTAAA TCTATATAGTTCATATTA ACTT TAATATAAACTATATAGA TGCCGATAAAAATAT CLI_0622 651697 - 651494 - | hypothetical protein CLI_0623 652095 - 651700 - | hypothetical protein TERM 1040 652155 - 652104 - R 100 -17.8 -4.2349 | opp_overlap 652104 652112, overlap 652105 TTTCCATAGTCAAAA CCTCCAAAGTGATATATTTATAAC TTGT GTTATAAATATGTCACTTTGAAGA TTGGCTTGTCAATGA TERM 1041 652104 - 652155 + r 100 -15.6 -3.24245 | opp_overlap 652104 652105, overlap 652112 TTTCCATAGTCAAAA CCTCCAAAGTGATATATTTATAAC TTGT GTTATAAATATGTCACTTTGAAGA TTGGCTTGTCAATGA TERM 1042 652154 - 652105 - R 100 -19.1 -3.13773 | opp_overlap 652104 652112, overlap 652104 TTCCATAGTCAAAAC CTCCAAAGTGATATATTTATAAC TTGT GTTATAAATATGTCACTTTGAAG ATTGGCTTGTCAATG TERM 1043 652112 - 652147 + r 100 -14.4 -3.61536 | opp_overlap 652105 652104, overlap 652104 GTCAAAACCTCCAAA GTGATATATTTATAAC TTGT GTTATAAATATGTCAC TTTGAAGATTGGCTT CLI_0624 652658 - 652209 - | acetyltransferase CLI_0625 653042 - 653254 + | 2Fe-2S-binding domain-containing protein TERM 1044 653373 - 653361 - f 79 -4.9 -5.46276 | overlap 653354 653362 AAGATACAGAAAAAA TTTTC ATT GAAAA ATTAAATGAAACATT TERM 1045 653391 - 653375 - f 77 -6.7 -4.66163 | overlap 653362 ATTTTCATTGAAAAA TTAAATG AAA CATTTAA GGTTAAAAATTAGCA TERM 1046 653454 - 653401 - f 100 -9.9 -4.67234 | opp_overlap 653402 653404, overlap 653402 653404 ATTTAAGGTTAAAAA TTAGCACTATGAATATTATTGAAAT AAAT AATTCGATAATATTCATAGTGCTCT TATTATCTTACTATA TERM 1047 653453 - 653402 - f 100 -13.4 -3.39618 | opp_overlap 653402 653404, overlap 653401 653404 TTTAAGGTTAAAAAT TAGCACTATGAATATTATTGAAAT AAAT AATTCGATAATATTCATAGTGCTC TTATTATCTTACTAT TERM 1048 653402 - 653453 + F 100 -15.6 -3.99229 | opp_overlap 653402 653401 653404, overlap 653404 TTTAAGGTTAAAAAT TAGCACTATGAATATTATTGAAAT AAAT AATTCGATAATATTCATAGTGCTC TTATTATCTTACTAT TERM 1049 653451 - 653404 - f 100 -16 -3.26237 | opp_overlap 653402 653404, overlap 653402 653401 TAAGGTTAAAAATTA GCACTATGAATATTATTGAAAT AAAT AATTCGATAATATTCATAGTGC TCTTATTATCTTACT TERM 1050 653404 - 653451 + F 100 -18.2 -3.57523 | opp_overlap 653404 653402 653401, overlap 653402 TAAGGTTAAAAATTA GCACTATGAATATTATTGAAAT AAAT AATTCGATAATATTCATAGTGC TCTTATTATCTTACT TERM 1051 653515 - 653491 - f 87 -6.7 -5.36965 | opp_overlap 653482 653493 653507, overlap 653493 CAATACTATAAAAAA CATTTATAAAT TTT ATTTATAAATA TATAACTTTTTAGTG TERM 1052 653513 - 653493 - f 75 -7.1 -4.30057 | opp_overlap 653482 653493 653507, overlap 653491 ATACTATAAAAAACA TTTATAAAT TTT ATTTATAAA TATATAACTTTTTAG CLI_0626 653726 - 653863 + | hypothetical protein CLI_0627 654218 - 655126 + | hypothetical protein TERM 1053 655187 - 655163 - f 100 -8.8 -5.5762 | opp_overlap 655163 AGTAAAGATAAAAAA TACATTTCAT GGTTT ATGAAATGTA TTTTTATCCTAGCGG TERM 1054 655163 - 655187 + F 95 -9.5 -4.91109 | opp_overlap 655163 AGTAAAGATAAAAAA TACATTTCATG GTT TATGAAATGTA TTTTTATCCTAGCGG CLI_0628 655395 - 655904 + | hypothetical protein CLI_0629 655916 - 657559 + | carbon starvation protein CstA TERM 1055 657616 - 657669 + F 78 -4.3 -5.45813 | gap 2 ATACAAATTATAAGA CTTCAGCAGAATATTAGGTCAAAAT TATGAC AATTT-ACCTAA-GTTTTGCTGAAG TTTTATTTTTTACTA CLI_0630 658024 - 658713 + | hypothetical protein TERM 1056 658871 - 658902 + F 77 -3.2 -5.72254 | opp_overlap 658886, overlap 658874 GTATTTTTTATATTG GTAGTTTTAAAATA ATTT TATTTTAAAACTTG TTTTTTATTGTTTAA TERM 1057 658874 - 658899 + F 95 -9.3 -4.86954 | opp_overlap 658886, overlap 658871 TTTTTTATATTGGTA GTTTTAAAATA ATTT TATTTTAAAAC TTGTTTTTTATTGTT TERM 1058 661520 - 661509 - g 70 -5.8 -4.22554 | CTACTGAAGAAATAA CTGC ATCA GCAG AGGAACAAGCGGCGG CLI_0631 659630 - 661621 + | methyl-accepting chemotaxis protein TERM 1059 661632 - 661655 + T 100 -8.2 -5.72622 | opp_overlap 661632 TATAAGTTTGAAAAA GCTGGCAATA ATAA TATTGCTGGC TTTTTTGTTTATAAA CLI_0632 663678 - 662020 - | ABC transporter, ATP-binding protein TERM 1060 663708 - 663686 - H 93 -7 -5.69473 | GATACCATAAAAAAA TCCCTCCTTA AAT TTAGGAGAGA GTATATAATAATTCC mscL 664256 - 664660 + | large conductance mechanosensitive channel protein CLI_0634 664990 - 665673 + | putative proton-coupled thiamine transporter YuaJ TERM 1061 665717 - 665685 - T 100 -9.3 -5.54079 | opp_overlap 665686 665687, overlap 665687 GTAAAAATTAAAAAA TAGGGTATTTCAAAA TCG CTTTGAAATACCCCT TTTTTATATTTTTAA TERM 1062 665686 - 665716 + T 100 -9.9 -5.69068 | opp_overlap 665685 665687, overlap 665687 TAAAAATTAAAAAAT AGGGTATTTCAAA ATCGC TTTGAAATACCCC TTTTTTATATTTTTA TERM 1063 665687 - 665715 + T 100 -13.4 -3.9778 | opp_overlap 665685 665687, overlap 665686 AAAAATTAAAAAATA GGGTATTTCAAA ATCGC TTTGAAATACCC CTTTTTTATATTTTT TERM 1064 665715 - 665687 - T 100 -14.1 -4.37346 | opp_overlap 665687 665686, overlap 665685 AAAAATTAAAAAATA GGGTATTTCAAAA TCG CTTTGAAATACCC CTTTTTTATATTTTT CLI_0635 665945 - 665808 - | hypothetical protein TERM 1065 666211 - 666181 - H 100 -16.4 -4.6902 | opp_overlap 666181 TTATAATTTTAAAAA GGGGTATTTCAAAA TAA CTTTGAAATACCCC TTTTTTATATTTTTA TERM 1066 666181 - 666211 + H 100 -15.7 -5.69068 | opp_overlap 666181 TTATAATTTTAAAAA GGGGTATTTCAAA ATAAC TTTGAAATACCCC TTTTTTATATTTTTA TERM 1067 666317 - 666285 - H 95 -10.9 -3.83318 | opp_overlap 666292, overlap 666292 GGTTGAAGAATAGAA GTAATAATACTATAA TTA TTAAAGTATTATTAC CGCCACAACCAAAGT CLI_0636 666594 - 667730 + | SecC motif-containing protein TERM 1068 667964 - 668021 + F 93 -9.5 -4.66609 | TGAAAAAAGATTATG TGCTTCCCTTAAAGTAGATAGATTT AAAAATAA AAATCTGTATATATTAAGGGGAGCA TTTTTGCGTGCAATA TERM 1069 668199 - 668172 - f 74 -8.6 -3.3442 | overlap 668170 GACAATACTATAACA CTAGTGTACTAT TTAG ATAGTACAGTAG AACTTTGGAGGTGAA CLI_0637 668218 - 668598 + | GntR family transcriptional regulator CLI_0638 668591 - 669286 + | ABC transporter, ATP-binding protein CLI_0639 669286 - 670047 + | putative ABC transporter, permease protein TERM 1070 670111 - 670077 - f 90 -11.6 -3.06573 | opp_overlap 670077, overlap 670067 AGTAAGAATGACAGA GGGTGTCTTAAAATTA AAT TTATTTTAAGGCACCC TTTCTTCGATGACTA TERM 1071 670077 - 670111 + F 100 -13.8 -4.2123 | opp_overlap 670077 670067 AGTAAGAATGACAGA GGGTGTCTTAAAATTA AAT TTATTTTAAGGCACCC TTTCTTCGATGACTA TERM 1072 670240 - 670189 - f 85 -10.2 -3.28924 | opp_overlap 670189 670190 670193 670223, overlap 670190 670192 TACGTCTCTGGATAA CGATTTCTAAGCTTTAGTGGGAGT AAAA ACTCCCTCCAAAGCCAAGAACTCT GTTTATAGCTATGGA TERM 1073 670190 - 670239 + F 83 -9.3 -3.56568 | opp_overlap 670189 670190 670192, overlap 670189 670193 670223 ACGTCTCTGGATAAC GATTTCTAAGCTTTAGTGGGAGT AAAA ACTCCCTCCAAAGCCAAGAACTC TGTTTATAGCTATGG TERM 1074 670239 - 670190 - f 100 -13.7 -2.57211 | opp_overlap 670190 670189 670193 670223, overlap 670189 670192 ACGTCTCTGGATAAC GATTTCTAAGCTTTAGTGGGAGT AAAA ACTCCCTCCAAAGCCAAGAACTC TGTTTATAGCTATGG TERM 1075 670237 - 670192 - f 82 -10.5 -2.82623 | opp_overlap 670190 670189 670193 670223, overlap 670190 670189 GTCTCTGGATAACGA TTTCTAAGCTTTAGTGGGAGT AAAA ACTCCCTCCAAAGCCAAGAAC TCTGTTTATAGCTAT TERM 1076 670193 - 670236 + F 75 -9.6 -2.60511 | opp_overlap 670192 670190 670189, overlap 670190 670189 670223 TCTCTGGATAACGAT TTCTAAGCTTTAGTGGGAGT AAAA ACTCCCTCCAAAGCCAAGAA CTCTGTTTATAGCTA TERM 1077 670763 - 670791 + F 77 -6.7 -4.56969 | overlap 670766 ATTATTGTAAAGTCT TTACCCCTGTG ATTTTTA CGCAGGGGTTA TTTATTTATAAAATT TERM 1078 670766 - 670788 + F 82 -8.4 -4.38748 | overlap 670763 ATTGTAAAGTCTTTA CCCCTGTG ATTTTTA CGCAGGGG TTATTTATTTATAAA TERM 1079 671653 - 671665 + G 70 -6.3 -4.15222 | opp_overlap 671653 671649 AAGGCCGAAAACTAA GTTTG TTG CAAAC TTTATTGGCGAAACT TERM 1080 672010 - 671992 - g 71 -3.1 -5.20333 | overlap 671995 CACCCATAATAAAAA CTATGTG TTTGC CACATGG AATCCTAAACATGCA potA 670958 - 672040 + | spermidine/putrescine ABC transporter, ATP-binding protein TERM 1081 672091 - 672056 - g 70 -8.6 -2.64155 | gap 1, opp_overlap 672059, overlap 672052 672060 TGTGGGGGAAATTTA GCAAT-GCTTTTTCAAA TAT TTTTAAAAAGCAATTGC ATAATAAAAATACAG TERM 1082 672086 - 672060 - g 72 -8.2 -3.25088 | opp_overlap 672059, overlap 672056 672052 GGGGAAATTTAGCAA TGCTTTTTCAAA TAT TTTTAAAAAGCA ATTGCATAATAAAAA potB 672040 - 673002 + | spermidine/putrescine ABC transporter, permease protein PotB CLI_0642 673005 - 674846 + | putative spermidine/putrescine ABC transporter, permease protein/spermidine/putrescine-binding protein TERM 1083 674870 - 674903 + T 100 -13.3 -4.58419 | opp_overlap 674873, overlap 674863 TTGAAAGTTTTCTAA CCAGGTGAGAAATTA TCCT TGATTTCACACCTGG TTTCTTATGTTTTGT CLI_0643 675939 - 675070 - | AraC family transcriptional regulator TERM 1084 676562 - 676551 - g 71 -5.8 -4.4634 | overlap 676552 676553 AACCTTAATAATAAA CCCT ACAA AGGG TGTAGATCCTTCCAC CLI_0644 676213 - 677502 + | proton/sodium-glutamate symporter TERM 1085 677502 - 677492 - f 72 -4 -5.40474 | AGTGGGTTAAAAAAA TTAC AGC GTAA AAAGGGTGTAACCAT CLI_0645 677946 - 678104 + | hypothetical protein CLI_0646 678197 - 678988 + | hypothetical protein TERM 1086 679125 - 679103 - f 71 -6.5 -4.01939 | TAATTTATAAGTAAA TATATGTTT AAATA AAACATATA AGGAGGACTAGTTGT CLI_0647 679139 - 679576 + | acetyltransferase CLI_0648 679611 - 680585 + | CAAX amino terminal protease family protein TERM 1087 680596 - 680622 + T 77 -6.8 -4.68424 | overlap 680590 AATAAGAATCTGGAG TTTCTAACTA TAGTGCT TAGTTAGAAA TTTTTAGCTACGTTA CLI_0649 681776 - 680928 - | pentapeptide repeat-containing protein CLI_0651 682675 - 682869 + | hypothetical protein TERM 1088 682922 - 682950 + F 100 -11.2 -4.85433 | TGCTAAATAGTTCAG GCTGTTGATAAA TATGC TTTGTCAACAGC TTTTTAAATTTATAT TERM 1089 683045 - 683012 - f 91 -10.5 -3.59023 | opp_overlap 683012 CTTATACAATGATAA TATGAAGTTAACTTC ACAT GAAGCTTACTTCATA TTTTTATTTTTAGGG TERM 1090 683012 - 683045 + F 100 -8.3 -5.61881 | opp_overlap 683012 CTTATACAATGATAA TATGAAGTTAACTTC ACAT GAAGCTTACTTCATA TTTTTATTTTTAGGG TERM 1091 683131 - 683119 - g 72 -7.7 -3.60348 | opp_overlap 683118 683119 TCCAATATGACACAA CAGCA GCT TGCTG ATTTAGTTTCAGTTT CLI_0652 683071 - 683283 + | DNA binding protein TERM 1092 683411 - 683425 + G 74 -7.2 -3.9392 | opp_overlap 683399 683409 683411, overlap 683399 AAATCTATTATAATA GATACA TTT TGTATC TTATTTGGAGTAACA CLI_0653 683273 - 683710 + | hypothetical protein lepB-1 683778 - 684386 + | signal peptidase I TERM 1093 684498 - 684462 - T 100 -8.3 -5.4588 | opp_overlap 684462 TAAAATTACAAAAAA TTAAAGTGGTATTTATT TTC AGTAAATACTACTTTAA TTTTTTATAGATATT TERM 1094 684462 - 684498 + T 100 -12.7 -5.30686 | opp_overlap 684462 TAAAATTACAAAAAA TTAAAGTGGTATTTATT TTC AGTAAATACTACTTTAA TTTTTTATAGATATT TERM 1095 685014 - 685034 + T 77 -4.9 -5.42975 | opp_overlap 685014 AGAAAGGTTTAAAAA TAAATTTTG ATC TAAAATTTA TTTTTATTTATGTAC CLI_0655 685163 - 685038 - | hypothetical protein TERM 1096 685893 - 685877 - g 71 -3.1 -5.25906 | ATAAATTAACAAAAA TATTAAA AAA TTCAATA TGGCTTTAAAGAAAG CLI_0656 685201 - 685902 + | LytTr family DNA-binding response regulator CLI_0657 686503 - 686622 + | hypothetical protein CLI_0658 686662 - 686787 + | hypothetical protein CLI_0659 687484 - 687630 + | hypothetical protein CLI_0660 688217 - 689569 + | radical SAM domain-containing protein TERM 1097 689866 - 689831 - g 100 -10.8 -4.10657 | opp_overlap 689831 TGAGAGTGTTGAAAA TTTAATATTACATGAA TTTG TTCATGTAGTATTAAA TTTAAAGACACAATC TERM 1098 689831 - 689866 + G 100 -13 -3.53224 | opp_overlap 689831 TGAGAGTGTTGAAAA TTTAATATTACATGAA TTTG TTCATGTAGTATTAAA TTTAAAGACACAATC TERM 1099 690124 - 690094 - g 70 -4.2 -4.946 | overlap 690071 ATGAAACATTAAAAA CTAAAAATTTTG AGCAAAG CAAAATGTTTAG CAATGAAAGTTTGTT CLI_0661 689562 - 690152 + | hypothetical protein CLI_0662 690189 - 690686 + | hypothetical protein TERM 1100 691217 - 691229 + G 73 -3.5 -5.32565 | TAATGGTTATTTTTT TATAT GCA ATATA TTTTTTCATTAATTG CLI_0663 690721 - 692433 + | putative ABC transporter, ATP-binding protein/permease protein CLI_0664 692607 - 693356 + | putative lipoprotein CLI_0665 693379 - 693858 + | acetyltransferase TERM 1101 695940 - 695923 - g 95 -7.1 -5.97979 | opp_overlap 695923 695921 ATAATAACAAAAAAA CATTTAC CATA GTAAATG TCTTAATATGTATCT CLI_0666 693855 - 696323 + | putative ABC transporter, permease protein CLI_0667 696338 - 697018 + | ABC transporter, ATP-binding protein TERM 1102 697102 - 697055 - f 87 -10.5 -3.17486 | opp_overlap 697055 AATAATTTTGATCAA TATATATCTATAAAAATAA AGTATTCTAA TTATTTTTATAGATATATA TTTTCACTAAAATTA TERM 1103 697055 - 697102 + F 95 -10.5 -4.19704 | opp_overlap 697055 AATAATTTTGATCAA TATATATCTATAAAAATAA AGTATTCTAA TTATTTTTATAGATATATA TTTTCACTAAAATTA CLI_0668 697591 - 698055 + | acetyltransferase CLI_0669 698192 - 698722 + | putative lipoprotein CLI_0670 698859 - 698734 - | hypothetical protein TERM 1104 698767 - 698793 + g 100 -14.6 -4.40358 | opp_overlap 698775 AATTAAAGTTGATTT TAAGGAAAGTGC ATC GCACTTTCCTTG TTTTATGCACTCAGT TERM 1105 698785 - 698775 - G 71 -6.8 -3.91911 | opp_overlap 698767 TTGATTTTAAGGAAA GTGC ATC GCAC TTTCCTTGTTTTATG CLI_0671 699218 - 699481 + | hypothetical protein TERM 1106 699691 - 699727 + F 100 -9.1 -5.51402 | opp_overlap 699690 699691 699694 ATAAATTAAAAAGAT TAAGGTATAATAAATAT ATA AAATTTATTATATCTTA TTTTTTTGAATCTAT TERM 1107 700468 - 700437 - g 88 -9 -4.43909 | gap 1, opp_overlap 700437 700436, overlap 700434 AGGGGAAGAAAACAA TCTTTAGCTA-ACCT TAT AGATATAGCTAAAGA ATTTTTGGAAAAAGG CLI_0672 699810 - 700676 + | degV family protein TERM 1108 700748 - 700794 + F 80 -3.4 -5.84432 | gap 1, opp_overlap 700748 TAAATAAATTAAAAG CCTTAATCATAAAGTAAATTT TTTTAT AAAAGTACTTTAT-ATTAAGG TTTTTTTGTGTTATA CLI_0673 701074 - 701586 + | hypothetical protein TERM 1109 701620 - 701652 + F 86 -3.7 -5.99154 | gap 1, opp_overlap 701613 ACTACAAATAAAAAA TACAC-TAGTAAAC TCATAT GTTTATTACGTGTA TTTTTTTATTTGCTA TERM 1110 701884 - 701918 + F 78 -5.3 -5.26155 | AGAAAAGTTAATACG TTGATTTTATATTTG GTATA CAAATTTAAAATTAA TTTTTATCTTTCTAT TERM 1111 702752 - 702741 - g 70 -4.4 -4.94672 | AAATAATAGTAAAAA GCTT CCAG AAGC TAAAGAAAAAGAGTT CLI_0674 702073 - 703983 + | sulfatase family protein TERM 1112 704069 - 704014 - T 100 -15.2 -3.99494 | opp_overlap 704011 704014 704016, overlap 704011 704016 TCAATTTAATAATAA CAGGGTTATGTTAAGAAATTATTATA CTAA CATTATATTTTCTTAACATAACCCTA TTTTATATAATATAA TERM 1113 704014 - 704069 + T 100 -12.3 -4.5954 | opp_overlap 704011 704014 704016, overlap 704011 704016 TCAATTTAATAATAA CAGGGTTATGTTAAGAAATTATTAT ACTAAC ATTATATTTTCTTAACATAACCCTA TTTTATATAATATAA TERM 1114 704016 - 704067 + T 100 -14.9 -3.90416 | opp_overlap 704011 704014 704016, overlap 704011 704014 AATTTAATAATAACA GGGTTATGTTAAGAAATTATTAT ACTAAC ATTATATTTTCTTAACATAACCC TATTTTATATAATAT TERM 1115 704067 - 704016 - T 100 -15.6 -3.57992 | opp_overlap 704011 704016 704014, overlap 704011 704014 AATTTAATAATAACA GGGTTATGTTAAGAAATTATTATA CTAA CATTATATTTTCTTAACATAACCC TATTTTATATAATAT TERM 1116 704115 - 704146 + T 100 -14.6 -3.62522 | TAAACAGAGTTCTTG GCTTTGGAGGGAGT TTTT ACTCTCTCTAAAGC TTATTAACAGAATTC TERM 1117 704158 - 704184 + T 85 -11 -2.92144 | opp_overlap 704159, overlap 704155 AAGCTTATTAACAGA ATTCTAAGGAGT TTT ACTCCTTAGAAG TAGTTATCCTTTAGG TERM 1118 704183 - 704159 - T 100 -14.5 -3.71552 | opp_overlap 704158 704155 AGCTTATTAACAGAA TTCTAAGGAGT TTT ACTCCTTAGAA GTAGTTATCCTTTAG TERM 1119 704224 - 704267 + T 100 -22.8 -3.08133 | gap 1, opp_overlap 704224 TATCCAGGGACGTAA CTGCTCTTTACTCCC-CCTTT GAA GAAGGTGGGAGTAAAGAGCAG TTACGTCCCTGGATA TERM 1120 704267 - 704224 - T 100 -22.1 -3.08133 | gap 1, opp_overlap 704224 TATCCAGGGACGTAA CTGCTCTTTACTCCC-CCTT TGAAG AAGGTGGGAGTAAAGAGCAG TTACGTCCCTGGATA CLI_0675 705712 - 704300 - | sigma-54 dependent transcriptional regulator TERM 1121 705928 - 705982 + r 100 -14.8 -2.75963 | opp_overlap 705928 705932 705938, overlap 705932 705936 TATTTGATAATTAAA TAAGTAAAAAGGTTGCTTCAAAAT AGATTTA ATTTTGAGGCAACCTCTTTATTTA CTTTAAAATAAAAAT TERM 1122 705982 - 705928 - R 100 -12.6 -4.00124 | opp_overlap 705928 705932 705936, overlap 705932 705938 TATTTGATAATTAAA TAAGTAAAAAGGTTGCTTCAAAAT AGATTTA ATTTTGAGGCAACCTCTTTATTTA CTTTAAAATAAAAAT TERM 1123 705932 - 705978 + r 100 -13.4 -4.07246 | opp_overlap 705928 705932 705938, overlap 705928 705936 TGATAATTAAATAAG TAAAAAGGTTGCTTCAAAAT AGATTTA ATTTTGAGGCAACCTCTTTA TTTACTTTAAAATAA TERM 1124 705978 - 705932 - R 95 -13.4 -3.06655 | opp_overlap 705932 705928 705936, overlap 705928 705938 TGATAATTAAATAAG TAAAAAGGTTGCTTCAAAAT AGATTTA ATTTTGAGGCAACCTCTTTA TTTACTTTAAAATAA TERM 1125 705936 - 705974 + r 100 -9.8 -4.62772 | opp_overlap 705932 705928 705938, overlap 705932 705928 AATTAAATAAGTAAA AAGGTTGCTTCAAAAT AGATTTA ATTTTGAGGCAACCTC TTTATTTACTTTAAA TERM 1126 705972 - 705938 - R 100 -10.2 -5.04356 | opp_overlap 705936 705932 705928, overlap 705932 705928 TTAAATAAGTAAAAA GGTTGCTTCAAAAT AGATTTA ATTTTGAGGCAACC TCTTTATTTACTTTA CLI_0676 707270 - 706047 - | NupC family nucleoside transporter TERM 1127 706294 - 706306 + g 75 -4.1 -5.26316 | overlap 706295 GAATATGCTACGAAC TCGTT TAT AACGG TTTTTTGTCCAATAA TERM 1128 706496 - 706483 - G 72 -5.3 -4.76075 | overlap 706493 706495 ATTATAGCAACAAAA GCTAT TAAC ATAGC TCCAACATTAAGAGC TERM 1129 707345 - 707328 - H 93 -4.9 -6.28401 | gap 1 TAAAAAATAAAAAAA CCTTCACA ATA TG-GAAGG CTTAAATATAAACAA TERM 1130 708322 - 708347 + H 100 -11.9 -5.84432 | opp_overlap 708322 ACCGCGGAATATATA CCTTTCGTCCC TTTT GGGATGAAGGG TTTTTTTATATTATG TERM 1131 708868 - 708845 - g 72 -6.8 -4.15788 | AATTTTTCCAAGAAA GAGGATTTGT TTAT ACAAATACTC CAATAATAACAGGTA asnS 708391 - 709782 + | asparaginyl-tRNA synthetase TERM 1132 709876 - 709820 - f 100 -11.3 -4.79756 | opp_overlap 709836, overlap 709836 TATATAATTTAAAAA GATAAATTTATAAAAAGTAGCACAA TTTTATT TGGTGCTACTTTTTATATTTTTATC AATAGAAAGATTTTT TERM 1133 709836 - 709860 + F 76 -4.3 -5.38398 | opp_overlap 709836 709820 ATAAATTTATAAAAA GTAGCACAA TTTTATT TGGTGCTAC TTTTTATATTTTTAT TERM 1134 709860 - 709836 - f 70 -4.3 -4.95896 | opp_overlap 709836, overlap 709820 ATAAATTTATAAAAA GTAGCACAA TTTTATT TGGTGCTAC TTTTTATATTTTTAT TERM 1135 709987 - 709966 - f 70 -3.1 -5.43621 | opp_overlap 709966 709981 709981 709984 709986, overlap 709976 ATAAATTATAAAAAA TATATAAGT ATTG ACTGATATA TCATTTAATGATATG TERM 1136 709981 - 710022 + F 72 -8.5 -3.12606 | gap 1, opp_overlap 709966 709976 709988 710013 710016 710018 710020, overlap 709966 709981 709984 709986 709988 TATATAAGTATTGAC TGATATATCATTTAATGATA TGT TAT-ATTTAATGATATATCA TTAAATGATATATAG TERM 1137 709988 - 710030 + F 89 -12.5 -2.93747 | opp_overlap 709976 709988 710013 710016 710018 710020, overlap 709986 709984 709981 709981 GTATTGACTGATATA TCATTTAATGATATGTTAT ATTTA ATGATATATCATTAAATGA TATATAGAATTTCAT CLI_0678 710076 - 710396 + | PadR family transcriptional regulator CLI_0679 710413 - 710949 + | hypothetical protein TERM 1138 710962 - 710988 + F 71 -7.4 -4.00842 | opp_overlap 710961 710962, overlap 710959 TAATATATACAATAG CCTAAACTGC CTATAGA GTAGTTTAGG TATTTATTTTCTAAT CLI_0680 711153 - 711608 + | LytR family transcriptional regulator CLI_0681 711610 - 712311 + | hypothetical protein TERM 1139 712464 - 712512 + F 100 -13.6 -3.21981 | opp_overlap 712464 712463 712466, overlap 712469 712474 AAAAGAGTATAGAAC TAGAATAAAGCCTTTTTACTTT ATAAA AAAGTATGAAGGTTTTATTCTA TATTAGTGCTATTTT TERM 1140 712512 - 712464 - f 76 -9.2 -2.77401 | opp_overlap 712464 712469 712474, overlap 712463 712466 AAAAGAGTATAGAAC TAGAATAAAGCCTTTTTACTTT ATAAA AAAGTATGAAGGTTTTATTCTA TATTAGTGCTATTTT TERM 1141 712469 - 712507 + F 73 -7.7 -3.71124 | opp_overlap 712466 712464 712463, overlap 712464 712474 AGTATAGAACTAGAA TAAAGCCTTTTTACTTT ATAAA AAAGTATGAAGGTTTTA TTCTATATTAGTGCT TERM 1142 712474 - 712502 + F 73 -5.4 -4.90002 | opp_overlap 712466 712464 712463, overlap 712469 712464 AGAACTAGAATAAAG CCTTTTTACTTT ATAAA AAAGTATGAAGG TTTTATTCTATATTA CLI_0682 712731 - 713618 + | AraC family transcriptional regulator CLI_0683 714053 - 714964 + | CAAX amino terminal protease family protein CLI_0684 714977 - 715369 + | DNA-binding protein TERM 1143 715863 - 715832 - f 100 -14.6 -3.62522 | opp_overlap 715824, overlap 715833 GAATTCTGTTAATAA TCTTTAGAGGGAGT AAAA ACTCCCTCTAAAGC CAAGAACTCTGTTTA TERM 1144 715862 - 715833 - f 100 -18.1 -2.77192 | opp_overlap 715824, overlap 715832 AATTCTGTTAATAAT CTTTAGAGGGAGT AAAA ACTCCCTCTAAAG CCAAGAACTCTGTTT CLI_0685 716012 - 717151 + | putative lipoprotein TERM 1145 717712 - 717702 - g 72 -2.6 -5.36314 | GAAAATATGAAAAAA TTAT TAG ATAA TATAAAATCAAAATT CLI_0686 717348 - 718436 + | putative lipoprotein TERM 1146 718485 - 718536 + F 79 -7 -4.67556 | opp_overlap 718491 718494 718497, overlap 718487 718489 718535 TAGGTTAAATAGTGG TGAATATAAGAATATTACTGAA AAAAAAGA TCCAGTAATATTCTTATATGTA TTTTTAAAATATTGT TERM 1147 718487 - 718534 + F 71 -7.4 -3.9442 | opp_overlap 718491 718494 718497, overlap 718485 718489 GGTTAAATAGTGGTG AATATAAGAATATTACTGAA AAAAAAGA TCCAGTAATATTCTTATATG TATTTTTAAAATATT TERM 1148 718489 - 718532 + F 89 -10 -3.54926 | opp_overlap 718491 718494 718497, overlap 718487 718485 TTAAATAGTGGTGAA TATAAGAATATTACTGAA AAAAAAGA TCCAGTAATATTCTTATA TGTATTTTTAAAATA TERM 1149 718530 - 718491 - f 85 -10.4 -3.04515 | opp_overlap 718489 718487 718485, overlap 718494 718497 AAATAGTGGTGAATA TAAGAATATTACTGAA AAAAAAGA TCCAGTAATATTCTTA TATGTATTTTTAAAA TERM 1150 718527 - 718494 - f 73 -7.7 -3.66288 | opp_overlap 718489 718487 718485, overlap 718491 718497 TAGTGGTGAATATAA GAATATTACTGAA AAAAAAGA TCCAGTAATATTC TTATATGTATTTTTA CLI_0687 718612 - 719295 + | DNA-binding response regulator CLI_0688 719300 - 720721 + | sensor histidine kinase TERM 1151 720955 - 720911 - f 90 -11.7 -3.08133 | gap 2, opp_overlap 720921 TATCCAGGGACGTAA CCGCTCT-TTACTCCCA-CTT TGAAG AAGATGGGAGTATTAGAGCGG ATAGTCATCGGATAA CLI_0689 721058 - 721774 + | D-alanyl-D-alanine carboxypeptidase family protein TERM 1152 721860 - 721838 - g 70 -5 -4.53857 | opp_overlap 721840, overlap 721835 721840 ATGAAAAAGAAATAA GAGATTTATT GGA AATAAATCTT ATAAATGAAGGATAT TERM 1153 721858 - 721840 - g 74 -7.6 -3.84447 | opp_overlap 721840, overlap 721838 721835 GAAAAAGAAATAAGA GATTTATT GGA AATAAATC TTATAAATGAAGGAT CLI_0690 721795 - 722487 + | DNA-binding response regulator CLI_0691 722477 - 723598 + | sensor histidine kinase TERM 1154 723673 - 723652 - T 73 -6.5 -4.20981 | opp_overlap 723653, overlap 723645 723653 TTAATAAATTATAAA GCCCCATGC AAAT GCATAGGGT TTTTGAATAATCTAA TERM 1155 723672 - 723653 - T 82 -10 -3.11504 | opp_overlap 723653, overlap 723652 723645 TAATAAATTATAAAG CCCCATGC AAAT GCATAGGG TTTTTGAATAATCTA TERM 1156 723653 - 723672 + T 83 -7.8 -4.69664 | opp_overlap 723653 723652 723645 TAATAAATTATAAAG CCCCATGC AAAT GCATAGGG TTTTTGAATAATCTA CLI_0692 724897 - 723758 - | hypothetical protein CLI_0693 725852 - 725040 - | response regulator TERM 1157 725176 - 725159 - G 70 -3.5 -5.0925 | CTTCAAAACTAAAAA TAGAATT TGAG AACTCTA CAAAGATGTCATTCA CLI_0694 727147 - 725849 - | sensor histidine kinase TERM 1158 726513 - 726529 + g 70 -5.2 -4.66609 | TTTCCCATGACTTTT TCTATG TTATC CATAGA TTTTTCCATAAGATA TERM 1159 727595 - 727611 + G 85 -2.3 -6.02919 | opp_overlap 727595 TAATTTAAAAAGGCA CATAAAA TAT TTTGATG TTTTTTTGTTTATCG rodA-1 727542 - 728702 + | rod shape-determining protein RodA TERM 1160 728744 - 728774 + T 100 -14.9 -3.62522 | gap 1, opp_overlap 728737, overlap 728745 TAAACAGAGTTCTTG GCTTCAGAGGGAGT TTTT ACTCCC-CTGAAGC TTATTAACAGAATTA cfa 730234 - 729056 - | cyclopropane-fatty-acyl-phospholipid synthase TERM 1161 730307 - 730277 - H 71 -8.6 -3.11559 | opp_overlap 730276 730283, overlap 730283 730287 ATTATAACCTTAATA TTTAAATATATACT TAT AGTAAATATTTAAA GTTAAATGGTCAATT TERM 1162 730400 - 730382 - H 70 -3.8 -5.18995 | overlap 730383 730385 AATATAATAGAAAAA CCAGTGGT CAT ACCACTAC TGAGATGAAAATAAG TERM 1163 730399 - 730383 - H 70 -7.3 -3.68957 | overlap 730382 730385 ATATAATAGAAAAAC CAGTGGT CAT ACCACTA CTGAGATGAAAATAA TERM 1164 730397 - 730385 - H 70 -7.7 -3.40146 | overlap 730383 730382 ATAATAGAAAAACCA GTGGT CAT ACCAC TACTGAGATGAAAAT TERM 1165 730428 - 730453 + H 85 -8.5 -4.57073 | opp_overlap 730428 AAGGCATAATAAAAA TGCGAAATATT CTTA AATATTTTGCA TTTTTAGAAAGGATA TERM 1166 730453 - 730428 - H 80 -6.3 -5.21236 | opp_overlap 730428 AAGGCATAATAAAAA TGCGAAATATT CTTA AATATTTTGCA TTTTTAGAAAGGATA CLI_0697 730562 - 731593 + | hypothetical protein TERM 1167 731618 - 731598 - f 100 -8.3 -5.31275 | opp_overlap 731598 CGTTATTATAAAAAA TCTCTCAGT ATA ACTGGGAGA TTTTTTTATTGAAAT TERM 1168 731598 - 731618 + F 100 -10.5 -5.80364 | opp_overlap 731598 CGTTATTATAAAAAA TCTCTCAGT ATA ACTGGGAGA TTTTTTTATTGAAAT CLI_0698 731763 - 733442 + | putative ABC transporter, ATP-binding protein/permease protein cat-1 734491 - 733865 - | chloramphenicol acetyltransferase TERM 1169 734000 - 734023 + g 84 -9 -4.32951 | opp_overlap 734000 734003, overlap 733992 AAAATATTTTCCAAA GGAGATTCTA GGTA TAGAATCTTC TTTATTCATTACAAT TERM 1170 734714 - 734701 - g 76 -3.9 -5.45813 | opp_overlap 734712, overlap 734712 TATGAAAAAAGAAAA GAATT ATTA AATTC TGCTAGAAATGTTTT CLI_0700 734656 - 735309 + | TetR family transcriptional regulator CLI_0701 735377 - 735847 + | acetyltransferase csaA 736243 - 735914 - | csaA protein TERM 1171 736395 - 736368 - R 100 -9.4 -5.12617 | opp_overlap 736372 736375 736388, overlap 736388 GAACTATTTAAAAAA TAAAGAACTATT TTAA AATAGTCCTTTA AAATGACATCTATAT CLI_0703 737182 - 736451 - | AraC family transcriptional regulator TERM 1172 736594 - 736612 + g 83 -2.4 -5.88565 | overlap 736595 TTGTTAAGTCTGTAT TCAAGAGA AAT TCTTTTGC TTTTTTTATTCTAAG TERM 1173 737485 - 737459 - R 100 -13.2 -4.14615 | opp_overlap 737457 AAAAATGTTTTAAAA TATCCTGCCTAA TTA TTAGACAGGATA AAAATTTGTTATTGT CLI_0704 738025 - 737474 - | cupin domain-containing protein TERM 1174 738109 - 738084 - H 80 -6.3 -5.22258 | opp_overlap 738088 TAAAGTAAAATAAAA CTAATGTTAAA TATA TTTAACATTCG TAAGATATTATAACG CLI_0705 738282 - 738872 + | HDIG domain-containing protein TERM 1175 738893 - 738917 + F 100 -10.1 -5.19879 | opp_overlap 738893 TTATTATAAAGTAAA GCACTAATCTT TAA AAGATAAGTGC TTTTTATATTTACAA TERM 1176 738917 - 738893 - f 93 -10.1 -4.16182 | opp_overlap 738893 TTATTATAAAGTAAA GCACTAATCTT TAA AAGATAAGTGC TTTTTATATTTACAA CLI_0706 739000 - 739275 + | hypothetical protein TERM 1177 739546 - 739566 + G 72 -7.7 -3.56837 | opp_overlap 739546 739548, overlap 739542 GCGGAATGTATGATA GATTATCTG TTT TAGATAATC TTATACTATTTGCAG CLI_0707 739275 - 740120 + | ABC transporter ATP-binding protein TERM 1178 740875 - 740917 + T 90 -13 -2.62372 | opp_overlap 740875, overlap 740872 740871 740882 ATTAACTAATATAAA TGTGGAATCCCAGTAATA ATAAAGC TGTTGCTGGGATTCCATA TGAGTTAATATTTAT TERM 1179 740917 - 740875 - T 75 -7.1 -4.28323 | opp_overlap 740872 740871 740875 740882 ATTAACTAATATAAA TGTGGAATCCCAGTAATAA TAAAG CTGTTGCTGGGATTCCATA TGAGTTAATATTTAT CLI_0709 742140 - 740929 - | allantoate amidohydrolase TERM 1180 742868 - 742887 + H 93 -6.4 -5.9218 | ATTGTTGAATTTTAA GCTGTGGG AGTA TCCATAGC TTTTTTTATTATATA TERM 1181 743234 - 743251 + G 72 -4.2 -5.0133 | TTTAGAACCCACTGA TTTGAC TATGAT GTCAAA TTTTTTAAGAGGATG TERM 1182 744327 - 744317 - g 88 -4 -5.72622 | TGGAGAAATAAAAAA CTTT TCA AAAG AACATCCTGATTTTG CLI_0710 742971 - 744866 + | MutS domain-containing protein CLI_0711 745041 - 745643 + | TPR repeat-containing protein TERM 1183 746054 - 746100 + T 100 -18.3 -4.04806 | opp_overlap 746059, overlap 746059 TTATCTGTATTTAGG AAAAAGCGAACGCCAGACA ATAGATTTG TGTCTGGCGTTCGCTTTTG TTATTTGCTGTGCGA TERM 1184 746059 - 746095 + T 100 -18.2 -5.02606 | opp_overlap 746059, overlap 746054 TGTATTTAGGAAAAA GCGAACGCCAGACA ATAGATTTG TGTCTGGCGTTCGC TTTTGTTATTTGCTG TERM 1185 746095 - 746059 - T 100 -18.2 -4.7497 | opp_overlap 746059 746054 TGTATTTAGGAAAAA GCGAACGCCAGACA ATAGATTTG TGTCTGGCGTTCGC TTTTGTTATTTGCTG CLI_0713 746612 - 746139 - | putative nimA protein TERM 1186 746382 - 746369 - G 70 -8.1 -3.14344 | opp_overlap 746368 TACCGTTTGTATCAA GCAGG AGCT CCTGC ATATCATACATGGTA CLI_0714 747048 - 746635 - | hypothetical protein TERM 1187 747456 - 747431 - H 90 -10.5 -3.3568 | opp_overlap 747427 747433, overlap 747425 ACAATTATACAGTAA TACCGTCCCCT TGAT AAGAGACGGTA TTGGCATTTTTATAG TERM 1188 747882 - 747860 - g 80 -6.4 -4.91712 | TGGAAGGCAGAAAAA TGGATATTTT AAG AAAAAATCCA GCAGTGTATTTTCAA CLI_0715 747673 - 748152 + | pyridoxamine 5'-phosphate oxidase family protein TERM 1189 748380 - 748412 + T 100 -13.6 -3.20858 | opp_overlap 748376 AGTTAGAATATTCAT GGCAGAAAACATTC ACGGA GATTGTTTTCTGCC TTCCTAAATGTCATA CLI_0716 748489 - 748376 - | hypothetical protein CLI_0717 750235 - 748826 - | GntR family transcriptional regulator TERM 1190 749575 - 749608 + g 79 -10.5 -3.03441 | opp_overlap 749574 749579 CACGAACCGGAACAG GCAATATTTTAAAGC CGTT GCTTTGAAATACTGC TCTTGCACCGTCATA TERM 1191 750490 - 750502 + H 78 -7.7 -4.25074 | AATAAATGGCTTTAT TCGCT CTG AGCGA TTTTCAAGTTTAGTA TERM 1192 750764 - 750805 + H 100 -11.7 -3.89435 | gap 1, opp_overlap 750769 750773, overlap 750765 750767 TGTTTGATGTATCTA TGACAGCAATTCCCACCGGT ATA ACTTGTGGGA-TTGCTGTCC TTTCACTTATTTGGC TERM 1193 750765 - 750804 + H 100 -15.2 -2.92938 | gap 1, opp_overlap 750769 750773, overlap 750764 750767 GTTTGATGTATCTAT GACAGCAATTCCCACCGGT ATA ACTTGTGGGA-TTGCTGTC CTTTCACTTATTTGG TERM 1194 750767 - 750802 + H 90 -12 -3.00451 | gap 1, opp_overlap 750769 750773, overlap 750765 750764 TTGATGTATCTATGA CAGCAATTCCCACCGGT ATA ACTTGTGGGA-TTGCTG TCCTTTCACTTATTT rhlE 751059 - 752336 + | ATP-dependent RNA helicase RhlE TERM 1195 752360 - 752383 + F 100 -6.8 -6.09196 | opp_overlap 752360 AAATATAAAAAAAGA TGATTTCTGT ATTA ACAGGAGTCA TTTTTTTATTTTGGG CLI_0720 752925 - 753413 + | putative rubrerythrin TERM 1196 753453 - 753423 - f 75 -5.4 -5.00196 | opp_overlap 753426, overlap 753424 753426 TTTTAAAGAATAAAA TTACCTGCATCTTA ATT TTAGATGCAGGTTT TTAAATTATAAGAGA TERM 1197 753452 - 753424 - f 79 -8.9 -3.59033 | opp_overlap 753426, overlap 753423 753426 TTTAAAGAATAAAAT TACCTGCATCTTA ATT TTAGATGCAGGTT TTTAAATTATAAGAG TERM 1198 753426 - 753450 + F 100 -11.5 -4.78149 | opp_overlap 753426 753424 753423 TAAAGAATAAAATTA CCTGCATCTTA ATT TTAGATGCAGG TTTTTAAATTATAAG TERM 1199 753450 - 753426 - f 95 -11.5 -3.35275 | opp_overlap 753426, overlap 753424 753423 TAAAGAATAAAATTA CCTGCATCTTA ATT TTAGATGCAGG TTTTTAAATTATAAG TERM 1200 753513 - 753534 + F 79 -8.9 -3.52475 | opp_overlap 753515 753517 753531 AAATTTCATCTTAGA TATAGTTGA CTAA TCAACTATA TTGTGATATATTGAA CLI_0721 753585 - 754022 + | MarR family transcriptional regulator CLI_0722 754050 - 755483 + | EmrB/QacA family drug resistance transporter TERM 1201 755496 - 755480 - T 73 -6.7 -4.22369 | ATTAAAACCAAATAA CTAAAAA GAA TTTTTAG GCCCCATTATTGAAA CLI_0723 756936 - 755878 - | hypothetical protein TERM 1202 757215 - 757246 + H 89 -10.2 -3.62522 | overlap 757216 TAAACAGAGTTCTTG GCTTCAGAGGGAGT TTTT ACTCTTCCTGAAGC TTATTAACAGAATTC TERM 1203 757251 - 757290 + H 73 -8.8 -2.90615 | gap 1, opp_overlap 757259, overlap 757255 757256 757258 CTTCCTGAAGCTTAT TAACAGAATTCTTAGGAGT TTT ACTCCTTAGAAGTC-GTTA TCCTTTAGGGGAAAT TERM 1204 757256 - 757286 + H 79 -9.8 -2.75769 | opp_overlap 757259, overlap 757255 757251 757258 TGAAGCTTATTAACA GAATTCTTAGGAGT TTT ACTCCTTAGAAGTC GTTATCCTTTAGGGG TERM 1205 757283 - 757259 - H 90 -10.1 -3.71552 | opp_overlap 757258 757256 757255 757251 AGCTTATTAACAGAA TTCTTAGGAGT TTT ACTCCTTAGAA GTCGTTATCCTTTAG CLI_0724 757451 - 758176 + | ABC transporter, ATP-binding protein CLI_0725 758173 - 759219 + | ABC transporter, permease protein TERM 1206 759261 - 759235 - f 100 -18.2 -3.52475 | opp_overlap 759235 TTGAACATACTATAA CACCCCTGATTA ATT TAATCAGGGGTG TTTATGATTTATAAC TERM 1207 759235 - 759261 + F 100 -18.2 -4.17701 | opp_overlap 759235 TTGAACATACTATAA CACCCCTGATTA ATT TAATCAGGGGTG TTTATGATTTATAAC CLI_0726 759335 - 760009 + | hypothetical protein CLI_0727 761487 - 760297 - | hypothetical protein TERM 1208 761769 - 761780 + G 70 -5.8 -4.22883 | opp_overlap 761769 GACTTTTTACACGAA CTCC TAAA GGAG TTATTTTAACTAATG TERM 1209 761917 - 761928 + G 71 -3 -5.27399 | overlap 761906 AGGGGTAGGAGATAC TACT TCTA AGTA TTTTTTACTATCTTA CLI_0728 761612 - 762487 + | LysR family transcriptional regulator CLI_0729 762526 - 762750 + | hypothetical protein TERM 1210 763024 - 763059 + F 100 -8.5 -5.72207 | opp_overlap 763024 GCTTGCTACACAAAA CCTATTTACAGATAT TTTGTT ATGTCTGGAAATAGG TTTTTTTGCTTTGGG TERM 1211 763059 - 763024 - f 72 -6.3 -4.52589 | opp_overlap 763024 GCTTGCTACACAAAA CCTATTTACAGATAT TTTGTT ATGTCTGGAAATAGG TTTTTTTGCTTTGGG CLI_0730 763085 - 763924 + | BglG family transcriptional antiterminator TERM 1212 764062 - 764052 - f 73 -2.6 -5.67063 | opp_overlap 764052 GGGATTACAAAAAAA TAAA ATA TTTA TTGTTGGGTAGTAAC CLI_0731 764130 - 765971 + | PTS system, beta-glucoside-specific, IIABC component TERM 1213 766269 - 766259 - g 76 -2.6 -5.51402 | ACACATGTAAAAAAA TTAT GTG ATAA GACTTTAAAATGTAG CLI_0732 765983 - 766801 + | phosphotransferase domain-containing protein TERM 1214 766957 - 766989 + F 95 -9.2 -4.75309 | opp_overlap 766957 TTCTGGTAAAATAAA TCCAGTAACAAGCA GTAAA TGCAGGTTACTGGA TTTTATTACGTTTAC TERM 1215 766989 - 766957 - f 93 -9.2 -4.64861 | opp_overlap 766957 TTCTGGTAAAATAAA TCCAGTAACAAGCA GTAAA TGCAGGTTACTGGA TTTTATTACGTTTAC TERM 1216 767027 - 767053 + F 71 -7.4 -3.93619 | opp_overlap 767027 AATGATATTAAAAAA GCTGTGACAATT AAA AATTATTACAGC TTTAAATTATTTTAT TERM 1217 767053 - 767027 - f 87 -7.4 -5.2422 | opp_overlap 767027 AATGATATTAAAAAA GCTGTGACAATT AAA AATTATTACAGC TTTAAATTATTTTAT TERM 1218 767674 - 767686 + G 78 -4.1 -5.41746 | AAATAATTCATATAC TTTCC AGT GGAGA TTTTTTTGGAGAATT TERM 1219 768092 - 768078 - g 73 -5.8 -4.53163 | opp_overlap 768077 TTAGATATTATAAAA CTTATT GGT AATAAG GTAATTATAATTAAA CLI_0733 767430 - 768140 + | Crp/FNR family transcriptional regulator TERM 1220 768167 - 768157 - f 75 -6.8 -4.54047 | opp_overlap 768157 TTATTTTAGAGAAAA GTGC TTT GCAC TTTTTTATTTTTTTG TERM 1221 768157 - 768167 + F 100 -6.8 -6.12458 | opp_overlap 768157 TTATTTTAGAGAAAA GTGC TTT GCAC TTTTTTATTTTTTTG CLI_0734 768298 - 769530 + | metallo-beta-lactamase family protein TERM 1222 769755 - 769732 - g 74 -3.2 -5.37593 | overlap 769735 CTTTAAAGGAAAAAA GAATAAATTC AGAT GAATTCATAC GAAGACTTAATGAAG CLI_0735 769590 - 770288 + | putative scdA protein CLI_0736 770314 - 771069 + | hypothetical protein TERM 1223 771107 - 771136 + F 87 -6.6 -5.42975 | opp_overlap 771126 TTAATAGATATTATA TAATTGCATTGG GACAAA CTAATGCGATTA TTTTTCTTTATATAA CLI_0737 771327 - 771911 + | methyladenine glycosylase family protein TERM 1224 772042 - 771998 - T 100 -10.4 -5.39721 | gap 1, opp_overlap 771998 772011 772034, overlap 772000 CTATTATATAAAAAA TACATCTCCAAAAGTTAGA TTTTTAGG TCTAACTTTTGG-GATGCA TCTCATATTGGCTGT TERM 1225 771998 - 772042 + T 76 -9.6 -2.92789 | gap 1, opp_overlap 771998 772000, overlap 772011 772034 CTATTATATAAAAAA TACATCTCCAAAAGTTAGATT TTTA GGTCTAACTTTTGG-GATGCA TCTCATATTGGCTGT TERM 1226 772040 - 772000 - T 95 -10.8 -4.32846 | gap 1, opp_overlap 771998 772011 772034, overlap 771998 ATTATATAAAAAATA CATCTCCAAAAGTTAGA TTTTTAGG TCTAACTTTTGG-GATG CATCTCATATTGGCT CLI_0738 772498 - 772079 - | hypothetical protein TERM 1227 772791 - 772759 - H 79 -7.1 -4.63044 | opp_overlap 772762 772790, overlap 772762 AGTTATAGAAATAAA GAAGAGTATCCTCAA AAA TAGAAGATACTCTTT TTATGCGTTATAAAA TERM 1228 772788 - 772762 - H 86 -8.8 -4.41158 | opp_overlap 772762, overlap 772759 TATAGAAATAAAGAA GAGTATCCTCAA AAA TAGAAGATACTC TTTTTATGCGTTATA TERM 1229 772762 - 772788 + H 80 -6.6 -4.93318 | opp_overlap 772762 772759 TATAGAAATAAAGAA GAGTATCCTCAA AAA TAGAAGATACTC TTTTTATGCGTTATA CLI_0739 772918 - 773385 + | hypothetical protein CLI_0740 773392 - 774741 + | hypothetical protein TERM 1230 774891 - 774908 + F 70 -7.7 -3.35849 | opp_overlap 774890 774886 774891, overlap 774890 774886 TAGCATAAAATAAAG CACCAGT TTTG GCTGGTG TCTTAATTTACTCAA CLI_0741 774996 - 775982 + | metallo-beta-lactamase family protein TERM 1231 776168 - 776110 - f 80 -9.3 -3.27704 | gap 1, opp_overlap 776110 776112 776114, overlap 776087 ATCTTTTAAATTTAA CATAGATACAAACCCCGCAATT-CAT GCATGTTA ATGCAATTGAATGGTTTGTATCTATG TTGGCTAAGATAAGT TERM 1232 776206 - 776228 + F 100 -15 -4.78149 | opp_overlap 776206 TAATATATATAGAAA GCCACATAGA TAA TCTATGTGGC TTTTTCGATTCTCAG TERM 1233 776228 - 776206 - f 100 -15 -4.2109 | opp_overlap 776206 TAATATATATAGAAA GCCACATAGA TAA TCTATGTGGC TTTTTCGATTCTCAG TERM 1234 776289 - 776271 - f 74 -8.9 -3.05597 | opp_overlap 776271, overlap 776270 TGTATTTTCTAAAAG CCACATG GGTAA CATGTGG TTTTTTTGTACCTAA TERM 1235 776271 - 776289 + F 100 -8.9 -5.64274 | opp_overlap 776271 776270 TGTATTTTCTAAAAG CCACATG GGTAA CATGTGG TTTTTTTGTACCTAA TERM 1236 776490 - 776480 - gf 71 -4.6 -4.73613 | GTATTATTAACAAAA GGAG TGT CCCC AATTACTGCTAGCAT CLI_0742 776324 - 777217 + | ABC transporter, permease protein CLI_0743 777180 - 777935 + | ABC transporter, ATP-binding protein CLI_0744 777966 - 778937 + | putative ABC transporter, substrate-binding protein TERM 1237 779168 - 779202 + F 84 -9.5 -3.78409 | overlap 779171 TATATTATTGTTTAC TAAGATGATTTCTGT ATTGA ACAGGGGTCATCTTA TTTAAGTTCCATTGA TERM 1238 779471 - 779459 - g 71 -7.7 -3.3878 | overlap 779458 AGATATGCCAAAAAT CTCAG CGG CTGAG TGGGAAGTAATGAAA blaI 779439 - 779819 + | penicillinase repressor TERM 1239 780442 - 780415 - T 78 -8.6 -3.86874 | opp_overlap 780415, overlap 780411 GCAAAAAGAAATTAA GCATAAACAGAA ATAT TCCTATTTATGC TTGTGATGACTTTAA TERM 1240 781658 - 781676 + T 79 -9 -3.78067 | opp_overlap 781657 781653 AAGAGCAAAAGAACT TTTAGGAT TTA ATCCTAAA TTTCCATTAAATATT TERM 1241 782248 - 782278 + T 75 -7.9 -3.95324 | gap 1 GACACCATCTTTTCT TTAGGTTTAACTTT AGCA AAAGT-AAACCTAA TTATTATTAAAAATA CLI_0748 783747 - 782326 - | hypothetical protein CLI_0749 784307 - 783744 - | RNA polymerase factor sigma-70 TERM 1242 785381 - 785370 - g 71 -3 -5.25906 | ATAAATTAATAAAAA CTTT TCCT AAAG TAAAAACAATAATGC TERM 1243 785473 - 785446 - g 72 -2.8 -5.43487 | AAATGAGATAAAAAA TAATACTACTAT AGAC AAAGAAGTATTA AAAGAATTTCATGAT CLI_0750 784748 - 785686 + | dihydrouridine synthase family protein greA-1 785843 - 786307 + | transcription elongation factor GreA TERM 1244 786380 - 786427 + F 100 -15.3 -4.16279 | gap 1, opp_overlap 786373 786380 786382, overlap 786382 ATAAATAATCTGAAA CAGAGGGACTGTTCTTATATTT AAATA AAAT-TAAGAACAGTCCCTCTA TTTTAGAATAATATA TERM 1245 786427 - 786380 - f 100 -17.5 -3.74841 | gap 1, opp_overlap 786380 786382, overlap 786373 786382 ATAAATAATCTGAAA CAGAGGGACTGTTCTTATATTT AAATA AAAT-TAAGAACAGTCCCTCTA TTTTAGAATAATATA TERM 1246 786382 - 786425 + F 100 -17.9 -3.67634 | gap 1, opp_overlap 786373 786380 786382, overlap 786380 AAATAATCTGAAACA GAGGGACTGTTCTTATATTT AAATA AAAT-TAAGAACAGTCCCTC TATTTTAGAATAATA TERM 1247 786425 - 786382 - f 100 -17.9 -3.44353 | gap 1, opp_overlap 786382 786380, overlap 786373 786380 AAATAATCTGAAACA GAGGGACTGTTCTTATATTT AAATA AAAT-TAAGAACAGTCCCTC TATTTTAGAATAATA CLI_0752 786475 - 787227 + | hypothetical protein TERM 1248 787358 - 787341 - f 79 -4.1 -5.80817 | overlap 787342 TTTAATATAAAAAAA TTCTGTG TAAT CACAGAT AAAGTCTTGGGGAAA TERM 1249 787357 - 787342 - f 77 -7.6 -4.06863 | overlap 787341 TTAATATAAAAAAAT TCTGTG TAAT CACAGA TAAAGTCTTGGGGAA TERM 1250 787363 - 787380 + F 80 -6.3 -5.1925 | opp_overlap 787363 787362 TAATCACAGATAAAG TCTTGGG GAAA TCCAAGA TTTTTTGCATTATAA TERM 1251 787611 - 787649 + F 77 -4.7 -5.42259 | opp_overlap 787613, overlap 787613 AACTTAGGTTATAAT AAGCTCAATCATTAAGA TTTTT TATAAATGATTGAGCTA TTTTTTTGAAAGTAA TERM 1252 787613 - 787647 + F 75 -7.3 -4.35085 | opp_overlap 787613, overlap 787611 CTTAGGTTATAATAA GCTCAATCATTAAGA TTTTT TATAAATGATTGAGC TATTTTTTTGAAAGT TERM 1253 787647 - 787613 - f 70 -7.3 -3.80733 | opp_overlap 787613 787611 CTTAGGTTATAATAA GCTCAATCATTAAGA TTTTT TATAAATGATTGAGC TATTTTTTTGAAAGT TERM 1254 788049 - 788069 + G 79 -8.3 -3.96681 | overlap 788041 788050 CACATTTTGAACTTG TTCTAGGAC AAA GTCCTAGAC TTGTTGATTTGTTAC TERM 1255 788050 - 788068 + G 90 -11.8 -2.96924 | overlap 788049 788041 ACATTTTGAACTTGT TCTAGGAC AAA GTCCTAGA CTTGTTGATTTGTTA CLI_0753 787712 - 788533 + | AraC family transcriptional regulator TERM 1256 788672 - 788620 - T 72 -8.1 -3.28866 | opp_overlap 788625, overlap 788625 788629 TCATATTTAAATAGA TAAAAGAAAGTTTTTAGATTCTTAT TTT ATAAGAATTTAAGAGCTTTCTTTTT TGTTTAAACTATTTT TERM 1257 788625 - 788667 + T 100 -14.6 -5.64421 | opp_overlap 788625 788620 788629 TTTAAATAGATAAAA GAAAGTTTTTAGATTCTTAT TTT ATAAGAATTTAAGAGCTTTC TTTTTTGTTTAAACT TERM 1258 788667 - 788625 - T 86 -8 -4.74013 | opp_overlap 788625, overlap 788620 788629 TTTAAATAGATAAAA GAAAGTTTTTAGATTCTTAT TTT ATAAGAATTTAAGAGCTTTC TTTTTTGTTTAAACT CLI_0754 788775 - 788656 - | hypothetical protein CLI_0755 789019 - 790008 + | putative ferrichrome ABC transporter, ferrichrome-binding protein TERM 1259 790251 - 790267 + G 79 -7.9 -4.32607 | opp_overlap 790244, overlap 790224 790260 GAGAATATCCCCTTA GCTTCCC TAT GGGATGC TTTATTCCATTTTAA TERM 1260 790524 - 790540 + G 70 -8.7 -2.64962 | overlap 790523 TTTTCCTTTTTAGGA GCAGCTT TTG GAGCTGC ATTAGTTAATGGTAT fhuB 790104 - 791144 + | ferrichrome ABC transporter, permease protein FhuB TERM 1261 791581 - 791591 + G 76 -2.6 -5.55769 | AGGTATTACAGCCGT TATA GTC TATA TTTTTTCTTATAAGC fhuG 791144 - 792184 + | ferrichrome ABC transporter, permease protein FhuG fhuC 792458 - 793243 + | ferrichrome ABC transporter, ATP-binding protein nifH 793273 - 794022 + | nitrogenase iron protein CLI_0760 794025 - 795293 + | hypothetical protein CLI_0761 795333 - 796571 + | hypothetical protein TERM 1262 796579 - 796616 + F 100 -10.1 -5.58179 | gap 1, opp_overlap 796579 796577 796575 ATGATTAAATATATA GTGTAGATGTTAGAATCA AAT TGATTCTT-CATCTGCAC TTTTTTATTGTCATA CLI_0762 797018 - 799030 + | methyl-accepting chemotaxis protein TERM 1263 799306 - 799278 - T 81 -5.4 -5.35365 | gap 1, opp_overlap 799278 799273 AAAATACAATAAAAA CAGTGCCA-GATT ATAT AATGATGGCACTG TTTTATTAATTTATA TERM 1264 799278 - 799306 + T 73 -5.4 -4.87052 | gap 1, opp_overlap 799278, overlap 799273 AAAATACAATAAAAA CAGTGCCA-GATT ATAT AATGATGGCACTG TTTTATTAATTTATA CLI_0764 800723 - 799326 - | hypothetical protein gcvT 801302 - 802414 + | glycine cleavage system T protein gcvH 802680 - 803072 + | glycine cleavage system H protein gcvPA 803075 - 804415 + | glycine dehydrogenase subunit 1 TERM 1265 804932 - 804969 + G 73 -9.3 -2.58544 | gap 1, opp_overlap 804939, overlap 804939 CTGATTCAGCACATG GTACAAATCCTGCTAGTG CAT CAGTAGCTGGATTTG-AC ATTGTAGAAATAAAA TERM 1266 804963 - 804939 - g 74 -7.1 -3.91412 | opp_overlap 804932 804939 AGCACATGGTACAAA TCCTGCTAGTG CAT CAGTAGCTGGA TTTGACATTGTAGAA TERM 1267 805765 - 805751 - g 82 -4.3 -5.52986 | overlap 805754 805755 ATGCTATGAAAAAAA TAGCT GTAGA AGCTA AAGAAAATCCAGAGC CLI_0768 804415 - 805869 + | glycine dehydrogenase subunit 2 TERM 1268 805924 - 805871 - f 83 -9.7 -3.55528 | opp_overlap 805874 805883, overlap 805869 805875 805876 AATGGCAAAAATAGA TAGAGCTCTAAGCTTCAGAGGGAGT TTTT ACTCCCACTAAAGCTTAGAAAATTA GATGAAAAACAAATA TERM 1269 805920 - 805875 - f 100 -14.9 -3.22584 | opp_overlap 805874 805883, overlap 805871 805869 805876 GCAAAAATAGATAGA GCTCTAAGCTTCAGAGGGAGT TTTT ACTCCCACTAAAGCTTAGAAA ATTAGATGAAAAACA TERM 1270 805919 - 805876 - f 100 -18.4 -2.52466 | opp_overlap 805874 805883, overlap 805875 805871 805869 CAAAAATAGATAGAG CTCTAAGCTTCAGAGGGAGT TTTT ACTCCCACTAAAGCTTAGAA AATTAGATGAAAAAC TERM 1271 806627 - 806615 - g 75 -4.9 -5.04325 | TTTAAAGGATAAAAA TACTA TTT TAGTA GAAACTAAAGATGGA lpdA 806265 - 807653 + | dihydrolipoyl dehydrogenase CLI_0770 807671 - 808648 + | putative lipoate-protein ligase A TERM 1272 808846 - 808797 - f 76 -6.1 -4.82548 | gap 1, opp_overlap 808797 TAAAAAGATATAAAA GAATCTATTTTTTAAGTAGTTAGC GTT GTTAAATACTTAAAAG-TAGATTC TTTTTTACATTTAAT TERM 1273 808797 - 808846 + F 100 -10.5 -5.22943 | gap 1, opp_overlap 808797 TAAAAAGATATAAAA GAATCTATTTTTTAAGTAGTTAGC GTT GTTAAATACTTAAA-AGTAGATTC TTTTTTACATTTAAT TERM 1274 808919 - 808953 + F 76 -5.9 -4.87665 | overlap 808913 AGTAAATGAGGTTTA TAGCCTTAGCT AAGTAAAATTAAA AGCTAAGGCTA TTTTTATCGATGAAA TERM 1275 809270 - 809259 - g 73 -5.8 -4.63527 | overlap 809261 CTATGATTTTAAAAA CAGC AGAG GCTG CCTTGAAAAAAGACC TERM 1276 809271 - 809261 - g 71 -6.8 -3.93148 | overlap 809259 ATGATTTTAAAAACA GCAG AGG CTGC CTTGAAAAAAGACCT CLI_0771 809057 - 810970 + | hypothetical protein CLI_0772 811044 - 811229 + | hypothetical protein TERM 1277 811309 - 811343 + G 76 -6.5 -4.66537 | opp_overlap 811309 AACTATTTAAGCAAT GAAGAAGGTGTATAT GTGAA AGGTACTCCTTCTTC TTTTATGTTAAGAAA CLI_0773 811216 - 811398 + | hypothetical protein CLI_0774 811464 - 812183 + | hypothetical protein CLI_0775 812405 - 812860 + | hypothetical protein TERM 1278 812862 - 812907 + F 74 -6.2 -4.66833 | opp_overlap 812862 ACTTTAATAGATAAA CCTCACTTACTACCGATACG GAGAAG CGTATCACAAGTAAATGAGG TTTTTGGCCTTAACC TERM 1279 812907 - 812862 - f 95 -10.6 -4.21142 | opp_overlap 812862 ACTTTAATAGATAAA CCTCACTTACTACCGATACG GAGAAG CGTATCACAAGTAAATGAGG TTTTTGGCCTTAACC TERM 1280 812912 - 812946 + F 90 -6.6 -5.71712 | overlap 812914 AGTAAATGAGGTTTT TGGCCTTAACCA TTGAAATTACT TGGTTAAGGCTA TTTTTTTATCTAAAA TERM 1281 812914 - 812944 + F 77 -7 -4.50122 | overlap 812912 TAAATGAGGTTTTTG GCCTTAACCA TTGAAATTACT TGGTTAAGGC TATTTTTTTATCTAA CLI_0777 814412 - 814669 + | hypothetical protein TERM 1282 814677 - 814703 + F 100 -13.2 -5.08824 | opp_overlap 814677 814671 ATAAATAAATTTAAA GAGATTTTACCA TTT TGGTAGAATCTC TTTTTTAGATAGGAA TERM 1283 814703 - 814677 - f 100 -11 -3.97446 | opp_overlap 814677, overlap 814671 ATAAATAAATTTAAA GAGATTTTACCA TTT TGGTAGAATCTC TTTTTTAGATAGGAA CLI_0778 815062 - 815628 + | acetyltransferase TERM 1284 815759 - 815770 + F 70 -3 -5.61596 | CTTGCTGCGTAAGAT GTAT GAAT ATAC TTTTTTTATAAAGCT TERM 1285 816456 - 816442 - f 71 -7.2 -3.86311 | ATACTGAAATTCAAA GATGTA TAA TACATC AAATTAGAAATTCCT TERM 1286 817516 - 817502 - g 72 -8.6 -2.89564 | overlap 817504 CTCTTACCGTATATA TACGCA GAC TGCGTA CAAAAATCGAAGATA CLI_0780 816913 - 817611 + | DNA-binding response regulator CLI_0781 817608 - 818645 + | sensor histidine kinase CLI_0782 818718 - 819401 + | ABC transporter, ATP-binding protein CLI_0783 819398 - 821200 + | ABC transporter, permease protein TERM 1287 821254 - 821301 + F 93 -12.2 -3.12895 | opp_overlap 821284, overlap 821251 GACTGAATACTCTAC TATCTGCTGTACGACGGT AAAAGAAAAAAA GCCGTCGTACAGCAGACA TATCTTCATAGGCCA TERM 1288 821296 - 821284 - f 95 -5.5 -6.09196 | opp_overlap 821254 821251 GGTAAAAGAAAAAAA GCCGT CGT ACAGC AGACATATCTTCATA TERM 1289 821789 - 821761 - f 100 -11.9 -4.21319 | opp_overlap 821751 821764, overlap 821751 821764 ACGAAGTTCAATAAA GAACCTTTCCTCA AAT TGAGAAAAAGTTC TTAGAGGAAAATCAG TERM 1290 821786 - 821764 - f 78 -7.8 -4.2204 | opp_overlap 821764, overlap 821761 AAGTTCAATAAAGAA CCTTTCCTCA AAT TGAGAAAAAG TTCTTAGAGGAAAAT CLI_0784 821956 - 822444 + | MarR family transcriptional regulator CLI_0785 822676 - 823263 + | putative NADPH-dependent FMN reductase TERM 1291 823563 - 823546 - f 73 -7.1 -4.0641 | TTTTATGGACATAAA GTAACTT CCAC AAGTTAC TAGAAATCACTGCTC TERM 1292 823707 - 823735 + G 100 -8.2 -6.37666 | opp_overlap 823706 ATAAATAATAATGAG GGAGAATCTCCA GATTA TGGGGGTTCTTC TTTTTTTTATTTTGT CLI_0786 823626 - 823760 + | hypothetical protein CLI_0787 823801 - 824355 + | hypothetical protein CLI_0788 824594 - 825373 + | MerR family transcriptional regulator CLI_0792 827270 - 827716 + | dehydrogenase domain-containing protein CLI_0793 827813 - 827959 + | hypothetical protein CLI_0794 828046 - 829740 + | 67 kDa myosin-cross-reactive antigen family protein CLI_0795 830889 - 831104 + | hypothetical protein TERM 1293 831390 - 831415 + F 78 -8.5 -4.00042 | gap 1, opp_overlap 831395, overlap 831393 ACAAACTCTACACTT TAACACCAT-AC TTT GTGATGGTGTTA TTCTTTCATCAAAAG CLI_0796 831444 - 832175 + | ABC transporter ATP-binding protein CLI_0797 832162 - 832905 + | putative drug resistance ABC-2 type transporter, permease protein TERM 1294 833091 - 833063 - T 70 -3.2 -5.39755 | opp_overlap 833065 833073, overlap 833065 TATAAGCATAAAAAA GAGGACTTAC TGTAATAAG GTAAGTCCTT GATACATCTTTAAAG CLI_0798 834246 - 833365 - | EamA family protein TERM 1295 835280 - 835247 - H 79 -9.1 -3.80841 | opp_overlap 835243 835247 835248 835257, overlap 835248 835257 AGTATCACTATGAAA TCTACAAAAATCATA ATAT TATGATTTTCGTAGG TTAATTTTATATTTA TERM 1296 835247 - 835280 + H 81 -9.1 -3.84852 | opp_overlap 835247 835248 835257, overlap 835243 835248 835257 AGTATCACTATGAAA TCTACAAAAATCATA ATAT TATGATTTTCGTAGG TTAATTTTATATTTA TERM 1297 835248 - 835279 + H 82 -10.4 -2.89285 | opp_overlap 835248 835247 835257, overlap 835247 835243 835257 GTATCACTATGAAAT CTACAAAAATCATA ATAT TATGATTTTCGTAG GTTAATTTTATATTT TERM 1298 835279 - 835248 - H 91 -12.6 -2.88023 | opp_overlap 835247 835243 835248 835257, overlap 835247 835257 GTATCACTATGAAAT CTACAAAAATCATA ATAT TATGATTTTCGTAG GTTAATTTTATATTT CLI_0800 835932 - 837323 + | hypothetical protein CLI_0801 837588 - 838025 + | acetyltransferase CLI_0802 838333 - 838488 + | hypothetical protein CLI_0803 838439 - 838555 + | hypothetical protein CLI_0804 838611 - 839576 + | AraC family transcriptional regulator CLI_0805 839662 - 839922 + | tfoX domain-containing protein TERM 1299 840008 - 839960 - T 90 -12.8 -2.67973 | gap 1, opp_overlap 839960 839961, overlap 839951 ATACAACCTATATTA GGAGGTATGTAGGTAAATTTGTA TTTA CATAAATCTACCTACATACC-CC GTTTAGAACAAAAAA TERM 1300 839960 - 840009 + T 79 -8.8 -3.53012 | opp_overlap 839951 839960, overlap 839961 ATACAACCTATATTA GGAGGTATGTAGGTAAATTTGT ATTTAC ATAAATCTACCTACATACCCCG TTTAGAACAAAAAAA TERM 1301 839961 - 840008 + T 88 -12.3 -2.71712 | opp_overlap 839960, overlap 839960 TACAACCTATATTAG GAGGTATGTAGGTAAATTTGT ATTTAC ATAAATCTACCTACATACCCC GTTTAGAACAAAAAA CLI_0806 841049 - 840051 - | 3-oxoacyl-[acyl-carrier-protein] synthase III,-like protein TERM 1302 841001 - 840988 - G 70 -3.9 -5.03747 | AAATGTTTCAAAAAA TATTC ATTA GAATA GCTTGTTTTAGGATG CLI_0807 841299 - 842765 + | methyl-accepting chemotaxis protein TERM 1303 842812 - 842783 - f 74 -5 -5.1764 | opp_overlap 842783 TAGATAATATAAAAA GATGGTTATTGC AAATTA GCAGTGACCATC TTTTTTTGTATAGCA TERM 1304 842783 - 842812 + F 100 -9.4 -5.71712 | opp_overlap 842783 TAGATAATATAAAAA GATGGTTATTGC AAATTA GCAGTGACCATC TTTTTTTGTATAGCA CLI_0808 843324 - 843614 + | hypothetical protein TERM 1305 843617 - 843664 + F 74 -5 -5.19328 | opp_overlap 843621 843622, overlap 843622 AAGTTATGGTTAATA TAAAGGGCATGTTTTTCACATT TATT ACTATGAAAAACATGCCTTAAA TTTTTATTCTAAGCT TERM 1306 843660 - 843621 - f 95 -10.2 -4.19624 | opp_overlap 843617 843622, overlap 843622 TATGGTTAATATAAA GGGCATGTTTTTCACATT TATT ACTATGAAAAACATGCCT TAAATTTTTATTCTA TERM 1307 843622 - 843659 + F 95 -11.5 -3.53262 | opp_overlap 843621 843622, overlap 843617 ATGGTTAATATAAAG GGCATGTTTTTCACATT TATT ACTATGAAAAACATGCC TTAAATTTTTATTCT TERM 1308 843659 - 843622 - f 100 -13.7 -3.11292 | opp_overlap 843622 843617, overlap 843621 ATGGTTAATATAAAG GGCATGTTTTTCACATT TATT ACTATGAAAAACATGCC TTAAATTTTTATTCT CLI_0809 843824 - 845377 + | ABC transporter, ATP-binding protein TERM 1309 845650 - 845678 + F 95 -10.4 -4.21343 | gap 1, opp_overlap 845649 CGTAGCAAAAGTGAT GAGGAGCTATCCA GCAA TGGA-GGCTCCTC TTTCTCTATATTGGG CLI_0810 845784 - 846713 + | putative transcriptional regulator TERM 1310 846722 - 846701 - f 79 -8.8 -3.54622 | opp_overlap 846701 AAAAAATTATGAGAA CAGTGACA TATAGG TGTCACTG TTTTTGTGTTAGAAT TERM 1311 846701 - 846722 + F 100 -9.5 -5.09762 | opp_overlap 846701 AAAAAATTATGAGAA CAGTGACAT ATAG GTGTCACTG TTTTTGTGTTAGAAT CLI_0811 846818 - 847444 + | DJ-1/PfpI family protein CLI_0812 847536 - 848006 + | hypothetical protein TERM 1312 848063 - 848016 - T 73 -7.3 -4.06964 | gap 2, opp_overlap 848016 848017 848026, overlap 848024 848025 ATATAGATAAGTAAA TTCAACAACGCTTCAGAGGGAGT TTTT ACTCCCTCTAAAGC-TTAG-GAA ATGTTTATACAGGGT TERM 1313 848057 - 848024 - T 100 -14.7 -3.79506 | opp_overlap 848016 848017 848026, overlap 848016 848025 AAGTAAATTCAACAA CGCTTCAGAGGGAGT TTTT ACTCCCTCTAAAGCT TAGGAAATGTTTATA TERM 1314 848056 - 848025 - T 100 -18.2 -2.86619 | opp_overlap 848016 848017 848026, overlap 848024 848016 AGTAAATTCAACAAC GCTTCAGAGGGAGT TTTT ACTCCCTCTAAAGC TTAGGAAATGTTTAT CLI_0813 849113 - 848205 - | cysteine synthase family protein luxS 849549 - 849097 - | S-ribosylhomocysteinase metC 850693 - 849551 - | cystathionine beta-lyase TERM 1315 850744 - 850788 + r 100 -9.8 -4.86902 | ATTTCTTACTTGTTT TTTTAGATTGAAATAACT TTATTGTTC AGTTATTTTAATCTAAAA TTTTATTATAATTTA CLI_0816 851420 - 850794 - | hypothetical protein TERM 1316 851595 - 851567 - R 100 -13.3 -5.95946 | opp_overlap 851567 CTAATAATAAAAAAA CCTCTACCTCTAA ATT TTAGAGGCAGAAG TTAACTTCCGCGATT TERM 1317 851567 - 851595 + r 75 -8.9 -3.17571 | opp_overlap 851567 CTAATAATAAAAAAA CCTCTACCTCTAA ATT TTAGAGGCAGAAG TTAACTTCCGCGATT CLI_0817 852091 - 851972 - | hypothetical protein TERM 1318 852057 - 852043 - G 88 -4.4 -5.69379 | opp_overlap 852043 ATAGAATTAAAAAAA TAAATA TTT TATTTA ATATAAAGAATAAAA TERM 1319 852081 - 852065 - G 74 -6.7 -4.21607 | opp_overlap 852064 852068, overlap 852068 TTTATTTAATATAAA GAATAAA ACA TTTATTC CATATTTCATAATCA TERM 1320 853050 - 853036 - g 72 -2.8 -5.49569 | CATTAAGAGAAAAAA TAGATG CAG CTTCTA AAAAGGATAATAAAG CLI_0818 852330 - 854183 + | glycosy hydrolase family protein TERM 1321 854429 - 854417 - f 72 -4.9 -4.95155 | TGCAGATGATAAAAA TGATA TAA TATCA AAATCATTCTTAAAT CLI_0819 854549 - 854788 + | mercuric transport protein periplasmic component TERM 1322 854853 - 854808 - T 100 -18.1 -3.60587 | gap 1, opp_overlap 854808 ATAAAATTTATAGAA TTGCACTCAAAATGCTAG-TTA TTT TAATCTAACATTTTGAGTGCAA TTCATTAACACAAAC TERM 1323 854808 - 854853 + T 100 -15.9 -3.33696 | gap 1, opp_overlap 854808 ATAAAATTTATAGAA TTGCACTCAAAATGCTAG-TTA TTT TAATCTAACATTTTGAGTGCAA TTCATTAACACAAAC CLI_0820 855228 - 854896 - | hypothetical protein TERM 1324 855127 - 855103 - G 84 -8.9 -4.30995 | opp_overlap 855100 855103, overlap 855100 GCCTTCATAAAATAA TTTATTTAAAA TTA TTTTAAATAAA TCTGTTGAACCAATT TERM 1325 855103 - 855127 + g 73 -8.9 -3.07192 | opp_overlap 855103 855100, overlap 855100 GCCTTCATAAAATAA TTTATTTAAAA TTA TTTTAAATAAA TCTGTTGAACCAATT CLI_0821 855816 - 855316 - | hypothetical protein TERM 1326 856220 - 856194 - R 83 -3.9 -5.82281 | gap 1 AAAGATATAAAAAAA GATACCTGTGTA AAAA TA-ACAAGTATC TTTTTTGCATTAAAA CLI_0822 856928 - 856320 - | hypothetical protein CLI_0823 857443 - 857021 - | putative DNA-binding protein CLI_0824 857587 - 857787 + | DNA-binding protein TERM 1327 859025 - 859011 - g 70 -5 -4.68545 | ATTGAAGATATAAAA TCTTAC AAA GCAAGA TGGAAAGAAAAAAAG CLI_0825 858012 - 859151 + | phage protein CLI_0826 859170 - 859709 + | sigma-70 family RNA polymerase sigma factor TERM 1328 859768 - 859784 + F 75 -9.5 -2.75647 | overlap 859767 AGTAAGTGATTCACA CCAAATC GTA GATTTGG GTTCTCTACTTAAAG CLI_0827 859814 - 859993 + | hypothetical protein TERM 1329 860002 - 859970 - f 81 -7.2 -4.79826 | gap 1, opp_overlap 859971 859972, overlap 859972 859990 ATAGAGCACCAAAAA GATGAGTATTTCACT AGAA AGTGAGATACTCA-C TTTTTTTATAAATAT TERM 1330 859971 - 860002 + F 100 -9.6 -5.65177 | opp_overlap 859970 859972 859990, overlap 859972 TAGAGCACCAAAAAG ATGAGTATTTCACT AGAA AGTGAGATACTCAC TTTTTTTATAAATAT TERM 1331 860001 - 859972 - f 100 -10.9 -4.01045 | opp_overlap 859971 859972, overlap 859970 859990 AGAGCACCAAAAAGA TGAGTATTTCACT AGAA AGTGAGATACTCA CTTTTTTTATAAATA TERM 1332 859972 - 860001 + F 100 -13.1 -3.9748 | opp_overlap 859972 859970 859990, overlap 859971 AGAGCACCAAAAAGA TGAGTATTTCACT AGAA AGTGAGATACTCA CTTTTTTTATAAATA TERM 1333 860002 - 859990 - f 75 -7.7 -3.9712 | opp_overlap 859972 859971, overlap 859972 859970 GTATTTCACTAGAAA GTGAG ATA CTCAC TTTTTTTATAAATAT CLI_0828 860238 - 861068 + | hypothetical protein TERM 1334 861251 - 861290 + F 73 -8.8 -2.90615 | gap 1, opp_overlap 861259, overlap 861255 861256 861258 CACACTAAAGCTTAT TAACAGAATTCTTAGGAGT TTT ACTCCTTAGAAGTC-GTTA TCCTTTAGGAAAAAT TERM 1335 861256 - 861286 + F 79 -9.8 -2.75769 | opp_overlap 861259, overlap 861255 861251 861258 TAAAGCTTATTAACA GAATTCTTAGGAGT TTT ACTCCTTAGAAGTC GTTATCCTTTAGGAA TERM 1336 861283 - 861259 - f 90 -10.1 -3.71552 | opp_overlap 861258 861256 861255 861251 AGCTTATTAACAGAA TTCTTAGGAGT TTT ACTCCTTAGAA GTCGTTATCCTTTAG TERM 1337 861516 - 861504 - g 72 -4.9 -4.90266 | overlap 861498 GGCAGTAAGTAAAAA TCTTT TAG AAAGA AATCTAGCTCTAGAA CLI_0829 861487 - 861708 + | hypothetical protein CLI_0830 861728 - 861955 + | hypothetical protein TERM 1338 862008 - 861974 - T 100 -11.6 -4.1391 | opp_overlap 861982, overlap 861982 AAAATAGAAGAATAA TTTAAAAAGCTCTCAC ATT GTGAGGGCTTTTTATA ACTGAATTTTTAAGA TERM 1339 861982 - 862000 + T 100 -11 -4.88067 | opp_overlap 861974 861982 AGAATAATTTAAAAA GCTCTCAC ATT GTGAGGGC TTTTTATAACTGAAT TERM 1340 862000 - 861982 - T 93 -8.8 -4.82333 | opp_overlap 861982, overlap 861974 AGAATAATTTAAAAA GCTCTCAC ATT GTGAGGGC TTTTTATAACTGAAT CLI_0831 863176 - 862199 - | LysM domain-containing protein TERM 1341 863150 - 863124 - G 100 -12.4 -3.65828 | opp_overlap 863121, overlap 863139 863141 ATACAAATTCCGAAA CGATGCGCTATA GTA TATAGCGTATCG CCATATTGAACTTTA CLI_0832 863441 - 863857 + | arsenate reductase ArsC TERM 1342 863884 - 863910 + F 86 -5.3 -5.80364 | opp_overlap 863884 863882 TGTATTTATGAAAGA TACTATAGG GATTAATGA CCTATAGTA TTTTTTTATTAGAAT arsR 864223 - 864546 + | arsenical resistance operon repressor ArsR arsD 864570 - 864941 + | arsenical resistence operon repressor ArsD arsA 864960 - 866705 + | arsenical pump-driving ATPase ArsA arsB 866804 - 867874 + | arsenical-resistance protein CLI_0837 867928 - 868128 + | hypothetical protein TERM 1343 868186 - 868148 - T 86 -9.2 -4.15657 | opp_overlap 868157, overlap 868151 868157 TGAGAACTATATAAA TTAGGAAAATATAATTAA AAA TTAATTATATTTTCCTTG GGCTGTTGATAAACA TERM 1344 868183 - 868151 - T 100 -15.3 -3.08947 | opp_overlap 868157, overlap 868148 868157 GAACTATATAAATTA GGAAAATATAATTAA AAA TTAATTATATTTTCC TTGGGCTGTTGATAA TERM 1345 868157 - 868177 + T 77 -7.1 -4.42639 | opp_overlap 868151 868148 868157 TATAAATTAGGAAAA TATAATTAA AAA TTAATTATA TTTTCCTTGGGCTGT TERM 1346 868177 - 868157 - T 77 -7.1 -4.40993 | opp_overlap 868157, overlap 868151 868148 TATAAATTAGGAAAA TATAATTAA AAA TTAATTATA TTTTCCTTGGGCTGT TERM 1347 868186 - 868218 + T 93 -10 -3.89215 | AATTATATTTTCCTT GGGCTGTTGATAAA CATAT TTTGTAAACAGCCC TTTAAATTTATACAA CLI_0838 868763 - 868323 - | hypothetical protein TERM 1348 868788 - 868800 + H 74 -4.9 -5.19328 | TCCAAAATCATTATT TAGTT GTA AACTA TTTTTATTCTAAGCT CLI_0839 869083 - 869400 + | arsenical resistance operon repressor CLI_0840 869547 - 870353 + | UbiE/COQ5 family methlytransferase TERM 1349 870399 - 870423 + F 100 -14.5 -4.55673 | TGATCCTTTTGCAGA GCTTCAAAACT TAT AGTTTTGAAGC TTTTATAATATCTTT CLI_0841 870665 - 871213 + | phosphoglycerate mutase family protein CLI_0842 871435 - 871626 + | hypothetical protein CLI_0843 871619 - 871747 + | hypothetical protein TERM 1350 871786 - 871745 - f 80 -6.1 -5.16133 | gap 1, opp_overlap 871756, overlap 871748 871756 ATTACAATAGAAAAA TAATT-TAAAAAGCTCTCAC ATT GTGAGGGCTTTTTATAACTG AATTTTTAAGATTAG TERM 1351 871782 - 871748 - f 100 -11.6 -4.65219 | opp_overlap 871756, overlap 871745 871756 ACAATAGAAAAATAA TTTAAAAAGCTCTCAC ATT GTGAGGGCTTTTTATA ACTGAATTTTTAAGA TERM 1352 871756 - 871774 + F 100 -11 -4.88067 | opp_overlap 871748 871745 871756 AAAATAATTTAAAAA GCTCTCAC ATT GTGAGGGC TTTTTATAACTGAAT TERM 1353 871774 - 871756 - f 93 -8.8 -4.85195 | opp_overlap 871756, overlap 871748 871745 AAAATAATTTAAAAA GCTCTCAC ATT GTGAGGGC TTTTTATAACTGAAT CLI_0844 871988 - 872353 + | arsenate reductase-like protein TERM 1354 872486 - 872509 + T 75 -8.2 -3.58731 | opp_overlap 872486, overlap 872492 AAATACAGTTAAAAA GCACAAGGTT ATAA AACCTTATGC TTTAGAAAATATTTT TERM 1355 872509 - 872486 - T 100 -10.4 -4.75356 | opp_overlap 872486 872492 AAATACAGTTAAAAA GCACAAGGTT ATAA AACCTTATGC TTTAGAAAATATTTT CLI_0845 874057 - 872585 - | toxin complex component ORF-X3 TERM 1356 872681 - 872693 + g 74 -6.3 -4.4891 | AGAATTCCATGTGAT TTCAG AAA CTGAA TTTTCTAATGATAAA CLI_0846 876348 - 874096 - | toxin complex component ORF-X2 CLI_0847 876790 - 876362 - | toxin complex component ORF-X1 TERM 1357 877071 - 877092 + r 73 -6.7 -4.2461 | gap 1 ATTTGTTATCCTCTT TGT-CCTTTG TGG CAAAGGAACA TTTATTCATCACAAT botR 878662 - 878126 - | transcriptional regulator BotR, P-21 p47 878867 - 880117 + | P-47 TERM 1358 880982 - 880960 - g 70 -5 -4.64346 | opp_overlap 880969 AAAAATTAAAAATAA TAATGATATT GCT AATAGCATTA AATTATATTTAGAAC TERM 1359 881225 - 881215 - g 72 -2.6 -5.35365 | overlap 881204 AAAATATAATAAAAA TATT ATA AATA AGCCAGAATTAATAG ntnH 880133 - 883624 + | botulinum neurotoxin type A1 nontoxic-nonhemagglutinin subunit TERM 1360 884287 - 884301 + G 77 -8.6 -3.67296 | GTACAGAATCATTTA TTGCAG ATC CTGCAA TTTCACTAGCTCATG TERM 1361 887418 - 887408 - g 75 -4 -5.27399 | CAATATACGAAAAAA TACT AGC AGTA ATGGATGCTTTTGGA boNT/A1 883635 - 887471 + | botulinum neurotoxin type A1 TERM 1362 887501 - 887524 + F 100 -11.2 -4.18697 | opp_overlap 887501, overlap 887492 AAATAGGTATTAAAA TAGAGGTAAT ATAT ATTACCTCTA TTTTGGAATAATTTT TERM 1363 887524 - 887501 - f 100 -11.2 -4.31412 | opp_overlap 887501 887492 AAATAGGTATTAAAA TAGAGGTAAT ATAT ATTACCTCTA TTTTGGAATAATTTT TERM 1364 887773 - 887757 - f 73 -2.4 -5.75538 | overlap 887751 TTGAAAAAATAAAAA TAAATT TTTAG AATTTA TACAAGACGATTTTT CLI_0852 888076 - 889005 + | glycosy hydrolase family protein TERM 1365 889478 - 889455 - f 71 -8.2 -3.00994 | opp_overlap 889455, overlap 889457 TTAAGCTTAGATATA CACTAGGTAC AAAA GTATCTAGTG TTTTTTAACAAATGT TERM 1366 889455 - 889478 + F 100 -10.4 -5.02476 | opp_overlap 889455 889457 TTAAGCTTAGATATA CACTAGGTAC AAAA GTATCTAGTG TTTTTTAACAAATGT TERM 1367 889615 - 889595 - f 89 -9.7 -4.33754 | opp_overlap 889596, overlap 889596 AAGGATAATTTAAAA GGCTCTCAC ATT GTGAGAGCT TTTTATTAGGATATT TERM 1368 889596 - 889614 + F 100 -13.2 -5.09204 | opp_overlap 889595 889596 AGGATAATTTAAAAG GCTCTCAC ATT GTGAGAGC TTTTTATTAGGATAT TERM 1369 889614 - 889596 - f 100 -13.2 -3.19168 | opp_overlap 889596, overlap 889595 AGGATAATTTAAAAG GCTCTCAC ATT GTGAGAGC TTTTTATTAGGATAT CLI_0853 889884 - 890345 + | hypothetical protein thyA 890335 - 891309 + | thymidylate synthase CLI_0855 891321 - 892079 + | UbiE/COQ5 family methlytransferase TERM 1370 892170 - 892182 + G 71 -4.9 -4.788 | TTATCTCTTTTATTT TCATT TAT AATGA TTTTTACATTGGTTT TERM 1371 893092 - 893079 - g 80 -2.4 -5.8096 | opp_overlap 893079 TATAAAAAAGAAAAA GCAA TTGAGC TTGC TAATATTATTACAGA CLI_0856 892125 - 893339 + | putative thiaminase I TERM 1372 893369 - 893392 + F 93 -9 -4.82901 | opp_overlap 893369 ATCATTGAAATTAAA GGTACTTTTA TTAT TAAAAGTGCC TTTTTATAGAAGGGA TERM 1373 893392 - 893369 - f 71 -6.8 -4.08887 | opp_overlap 893369 ATCATTGAAATTAAA GGTACTTTTA TTAT TAAAAGTGCC TTTTTATAGAAGGGA thiD-2 893417 - 894244 + | phosphomethylpyrimidine kinase CLI_0858 894416 - 894649 + | hypothetical protein TERM 1374 894854 - 894898 + T 80 -6 -5.10767 | opp_overlap 894849 ATCTTATAAATAAAA TCTAGTGAAAATTTTAGGTT GTATA AATAAGAAATTTTCACTAGA TTTTTATGTTAAATA CLI_0859 895536 - 895072 - | small multidrug export protein CLI_0860 895932 - 896720 + | ABC transporter, ATP-binding protein TERM 1375 898026 - 898058 + G 71 -5.8 -4.50902 | overlap 898024 898028 898029 CTTTAAAAGGATTTA TATTCAGATATATT TTCCC AGTATATCTGAGTG TTTGTATTATTTTTT CLI_0861 896723 - 898420 + | hypothetical protein TERM 1376 898547 - 898529 - f 90 -7.4 -5.38549 | opp_overlap 898529, overlap 898531 TTTAAATAATAAAAA GTCAGAGA AAT TCTCTGGC TTTTTTAATTTTAAT TERM 1377 898529 - 898547 + F 100 -9.6 -5.48054 | opp_overlap 898529 898531 TTTAAATAATAAAAA GTCAGAGA AAT TCTCTGGC TTTTTTAATTTTAAT CLI_0862 898694 - 899386 + | DNA-binding response regulator TERM 1378 900171 - 900153 - g 80 -2.4 -5.68489 | GATAAGAATAAAAAA CTAAAGAA CTT TTCTCTTG GAATGAAACAAAAGT CLI_0863 899763 - 900683 + | bacitracin ABC transporter, ATP-binding protein CLI_0864 900683 - 901474 + | hypothetical protein CLI_0865 901597 - 902454 + | AraC family transcriptional regulator CLI_0866 902499 - 903404 + | sensor histidine kinase TERM 1379 903437 - 903402 - f 80 -8.4 -4.29845 | opp_overlap 903407, overlap 903405 903407 GAATGGAATTTAAAA TAAGAGGCTGTACTCA AAGT TGAATACAGCCTTTTT ACCTTGTGTATGTAA TERM 1380 903434 - 903405 - f 95 -10.1 -4.25859 | opp_overlap 903407, overlap 903402 903407 TGGAATTTAAAATAA GAGGCTGTACTCA AAGT TGAATACAGCCTT TTTACCTTGTGTATG TERM 1381 903432 - 903407 - f 95 -12.7 -3.72228 | opp_overlap 903407, overlap 903405 903402 GAATTTAAAATAAGA GGCTGTACTCA AAGT TGAATACAGCC TTTTTACCTTGTGTA TERM 1382 903407 - 903432 + F 100 -10.5 -4.79756 | opp_overlap 903407 903405 903402 GAATTTAAAATAAGA GGCTGTACTCA AAGT TGAATACAGCC TTTTTACCTTGTGTA TERM 1383 905235 - 905220 - g 70 -6.2 -4.1043 | GGCAAACAGTATAAA TGCTAT AGTA ATAGCA CAACAACAGGCAGCC CLI_0867 904276 - 905304 + | hypothetical protein CLI_0868 905584 - 906627 + | hypothetical protein TERM 1384 906653 - 906687 + F 95 -12.4 -3.38297 | opp_overlap 906658, overlap 906658 AAATTAGGAAAATGT AAAAAGCATTCAATCT TTG AGATTGAGTGCTTTTG TTAATATATCTTCAT TERM 1385 906658 - 906682 + F 100 -12.3 -4.77079 | opp_overlap 906658, overlap 906653 AGGAAAATGTAAAAA GCATTCAATCT TTG AGATTGAGTGC TTTTGTTAATATATC TERM 1386 906682 - 906658 - f 100 -10.1 -4.88222 | opp_overlap 906658 906653 AGGAAAATGTAAAAA GCATTCAATCT TTG AGATTGAGTGC TTTTGTTAATATATC CLI_0869 906811 - 907503 + | ABC transporter, ATP-binding protein TERM 1387 909541 - 909527 - g 73 -5.8 -4.53602 | overlap 909540 GGTATATTAAACAAA GATATT TTC AATATC AGTGCGGCACATGAT CLI_0870 907490 - 910156 + | putative ABC transporter, permease protein CLI_0871 910668 - 910787 + | hypothetical protein TERM 1388 910909 - 910926 + F 84 -4.9 -5.67063 | opp_overlap 910909 ATATTTGAATAAAAA GAACTTA GAAA TAGGTTC TTTTTTTATACTAAA CLI_0872 911015 - 911728 + | DNA-binding response regulator TERM 1389 912485 - 912471 - g 85 -2.2 -6.12458 | overlap 912473 TAAAAAAAGAAAAAA TATTTT TAA AAAACA TAATATCAGATATTT CLI_0873 911882 - 913144 + | sensor histidine kinase CLI_0874 913333 - 913974 + | hypothetical protein TERM 1390 914125 - 914095 - T 79 -9.8 -2.67747 | opp_overlap 914098, overlap 914094 914097 TCCCTAGAGGATAAC GACTTCTAAGGAGT AAA ACTCCTAAGAATTC TGTTAATAAGCTTTA TERM 1391 914098 - 914122 + T 90 -10.1 -3.71552 | opp_overlap 914097 914095 914094 CTAGAGGATAACGAC TTCTAAGGAGT AAA ACTCCTAAGAA TTCTGTTAATAAGCT CLI_0875 914440 - 914243 - | small acid-soluble spore protein, H-type TERM 1392 914645 - 914635 - H 75 -4 -5.45802 | opp_overlap 914635 TCTCTAAAAGAAAAA TCTT TAA AAGA TTTGCGATGTGTTAC TERM 1393 914698 - 914741 + H 83 -3.3 -6.09196 | GAGTTATATTCAAAA CACTTATTTTTCTCTTTAG TGTAAT CTAGTGGAGAAAATAAGTG TTTTTTTATTTTAAA CLI_0876 914770 - 915549 + | hypothetical protein TERM 1394 915588 - 915574 - f 95 -10 -4.2231 | opp_overlap 915570 915574 AATTACGACTTAAAA GGGAGT TAT ACTCCC TTGGTTTAAAAAAAG TERM 1395 915574 - 915588 + F 89 -10 -3.51232 | opp_overlap 915574, overlap 915570 AATTACGACTTAAAA GGGAGT TAT ACTCCC TTGGTTTAAAAAAAG TERM 1396 916206 - 916166 - f 73 -6.5 -4.28069 | overlap 916157 916187 ACATAATCTAATAAA TTTTTTACTAAATAAAAAA TAC CTATTTATTTAGTAAAATA AACAGGGGGTTATAC TERM 1397 916212 - 916187 - f 82 -8.5 -4.47052 | overlap 916166 ACTAAATAAAAAATA CCTATTTATTT AGTA AAATAAACAGG GGGTTATACTAATGA dapB-1 916224 - 917021 + | dihydrodipicolinate reductase TERM 1398 917332 - 917346 + G 70 -8.6 -2.64104 | opp_overlap 917332, overlap 917331 917334 ATGACGAATTAAAAA TAGCTG GAG CAGCTA GATTTTGTTGGATGT TERM 1399 917346 - 917332 - g 93 -8.6 -4.90869 | opp_overlap 917332 917331 917334 ATGACGAATTAAAAA TAGCTG GAG CAGCTA GATTTTGTTGGATGT TERM 1400 917593 - 917556 - g 75 -4.4 -5.30189 | overlap 917558 GATAATATGAAAAAA GATCTTATGTTAGT AGATTCAAGA ACTAACATAAGATA TAAAGGTATAGAAGA TERM 1401 917591 - 917558 - g 74 -7 -4.26398 | overlap 917556 TAATATGAAAAAAGA TCTTATGTTAGT AGATTCAAGA ACTAACATAAGA TATAAAGGTATAGAA CLI_0878 917043 - 917882 + | sulfurtransferase family protein TERM 1402 918064 - 918087 + F 100 -10.4 -4.76191 | opp_overlap 918064 ATTGTATATACACAA CACTAGGTAC AAAA GTATCTAGTG TTTCTTTTAATGTAT TERM 1403 918087 - 918064 - f 75 -8.2 -3.64466 | opp_overlap 918064 ATTGTATATACACAA CACTAGGTAC AAAA GTATCTAGTG TTTCTTTTAATGTAT CLI_0879 918526 - 919728 + | hypothetical protein CLI_0880 920520 - 921596 + | hypothetical protein TERM 1404 922981 - 922942 - gf 85 -3.8 -5.69473 | overlap 922946 TACATTATAAAAAAA TTAATGATTTTATATTGT ATTT ACAAGATAAAATCAATGA AAATAAAAATGATTT TERM 1405 922977 - 922946 - gf 83 -9 -4.08806 | overlap 922942 TTATAAAAAAATTAA TGATTTTATATTGT ATTT ACAAGATAAAATCA ATGAAAATAAAAATG CLI_0881 922128 - 925703 + | hypothetical protein CLI_0882 925669 - 925782 + | hypothetical protein TERM 1406 926025 - 926013 - T 80 -6.3 -5.17054 | opp_overlap 926013 926013 926005 ATAATAGTTAAAAAA TATCC TAT GGATA GATTTATTTATCTAT CLI_0883 926642 - 926370 - | hypothetical protein TERM 1407 926438 - 926451 + g 73 -3.9 -5.22006 | overlap 926447 TGGAATTTGTAAGTG GTTTA TGAT TAAAC TTTTTATTATAATAA TERM 1408 927067 - 927095 + H 100 -14.1 -4.6468 | opp_overlap 927072, overlap 927072 AATAGAATAAGAGTT TAAAAGCTTTCAC TTA GTGGAAGCTTTTA TTTTGTCTAATTTAC TERM 1409 927072 - 927090 + H 100 -9.6 -5.23292 | opp_overlap 927072, overlap 927067 AATAAGAGTTTAAAA GCTTTCAC TTA GTGGAAGC TTTTATTTTGTCTAA TERM 1410 927090 - 927072 - H 75 -7.4 -4.21314 | opp_overlap 927067 927072 AATAAGAGTTTAAAA GCTTTCAC TTA GTGGAAGC TTTTATTTTGTCTAA TERM 1411 929356 - 929346 - g 76 -5.4 -5.14477 | GATATATTTAAAAAA GGAT CCA ATCC AGAAACTAACGCTCT CLI_0884 927471 - 929540 + | hypothetical protein CLI_0885 929967 - 930638 + | hypothetical protein CLI_0887 931650 - 932072 + | glyoxalase family protein CLI_0888 932138 - 933586 + | beta-lactamase TERM 1412 933686 - 933723 + F 70 -7.4 -3.74693 | gap 1, opp_overlap 933686, overlap 933679 AAATGGCATGTAAAA CCTATTTTACAT-ATTA AAAAG TAGTGATGTAAAATAGG TTTGATAGCGTGAAC CLI_0889 933779 - 934384 + | DNA-binding protein CLI_0890 934627 - 934773 + | hypothetical protein CLI_0891 934889 - 935077 + | hypothetical protein TERM 1413 935492 - 935534 + F 84 -9.5 -3.72228 | opp_overlap 935494 935498, overlap 935494 935498 TTCTAGTTCATAGAA AATAAATAAGAGTTCTC AAAATAAAA GAGAACTCTTATTTATG TATTGTTTTAAATTG TERM 1414 935494 - 935532 + F 95 -12.1 -3.424 | opp_overlap 935494 935498, overlap 935492 935498 CTAGTTCATAGAAAA TAAATAAGAGTTCTC AAAATAAAA GAGAACTCTTATTTA TGTATTGTTTTAAAT TERM 1415 935532 - 935494 - f 100 -12.1 -4.54047 | opp_overlap 935494 935492 935498, overlap 935498 CTAGTTCATAGAAAA TAAATAAGAGTTCTC AAAATAAAA GAGAACTCTTATTTA TGTATTGTTTTAAAT TERM 1416 935498 - 935528 + F 80 -8.5 -4.31833 | opp_overlap 935494 935498, overlap 935494 935492 TTCATAGAAAATAAA TAAGAGTTCTC AAAATAAAA GAGAACTCTTA TTTATGTATTGTTTT TERM 1417 935528 - 935498 - f 88 -8.5 -4.83243 | opp_overlap 935498 935494 935492, overlap 935494 TTCATAGAAAATAAA TAAGAGTTCTC AAAATAAAA GAGAACTCTTA TTTATGTATTGTTTT TERM 1418 935821 - 935807 - g 72 -4.4 -5.04082 | GAAATAATAAGAAAA TTTAAT TTA ATTAAA AAAATAAAAGAAAAT TERM 1419 936018 - 936008 - g 72 -4 -5.09259 | GACTTTAAAATAAAA TCTA CAG TAGA ATCACAGGAATTTAT CLI_0892 935609 - 937015 + | hypothetical protein TERM 1420 937176 - 937159 - f 76 -2.1 -5.95286 | opp_overlap 937161, overlap 937161 937175 ATTAAAAATAAAAAA CATATTA AAGT TAATATA TATAATTATTTACAT CLI_0893 937353 - 938522 + | putative amidohydrolase TERM 1421 938637 - 938593 - f 71 -8.1 -3.08133 | gap 2 TATCCAGGGACGTAA CCGCTCT-TTACTCCCA-CTT TTAAG AAGATGGAAGTATTAGAGCGG GTAGTCATCGGATAA brnQ-1 939217 - 940518 + | branched-chain amino acid transport system II carrier protein TERM 1422 940560 - 940536 - f 82 -4.3 -5.64304 | opp_overlap 940536 TAATATAATAAAAAA CACCTTGTTGT AAA ATAATAAGGTG TTTTTTTGTTTTTTT TERM 1423 940536 - 940560 + F 100 -8.7 -6.32976 | opp_overlap 940536 TAATATAATAAAAAA CACCTTGTTGT AAA ATAATAAGGTG TTTTTTTGTTTTTTT brnQ-2 940684 - 942000 + | branched-chain amino acid transport system II carrier protein TERM 1424 942055 - 942011 - T 100 -11.7 -4.90381 | opp_overlap 942015, overlap 942003 942015 TTTAATATAATAAAA TTAAGGGTTGTCTCAAAAT TAAATCT ATTTTGAGACAACCCTTTT CACAAGATAAAAATA TERM 1425 942051 - 942015 - T 100 -16.9 -3.86445 | opp_overlap 942015, overlap 942011 ATATAATAAAATTAA GGGTTGTCTCAAAAT TAAATCT ATTTTGAGACAACCC TTTTCACAAGATAAA TERM 1426 942015 - 942051 + T 100 -16.9 -4.08767 | opp_overlap 942015 942011 ATATAATAAAATTAA GGGTTGTCTCAAAAT TAAATCT ATTTTGAGACAACCC TTTTCACAAGATAAA CLI_0896 944559 - 942079 - | methyl-accepting chemotaxis protein/bacterial extracellular solute-binding protein family 5 TERM 1427 942820 - 942832 + g 70 -3.5 -5.06816 | overlap 942808 TAGTAAATCTTGCTC TATAA GAT TTATA TTTTTATTAGAACAT TERM 1428 943407 - 943417 + g 72 -6.8 -4.05446 | TTCCAGGAGATATTT CTCC ATA GGAG TTTATGGTTAAAAGA TERM 1429 944683 - 944673 - H 70 -4 -5.12971 | AACATTTAATAAAAA TTGT ATC ACAA AAGATTAATAAAGAA feoA-1 944782 - 945018 + | ferrous iron transport protein A TERM 1430 945822 - 945806 - f 75 -8.1 -3.54183 | opp_overlap 945806 945808, overlap 945805 CTTTATTAGAAAAAG TATTTCC CAG GGAAATA TCCTTACAATGGTTG TERM 1431 947555 - 947574 + F 82 -2.2 -6.17669 | opp_overlap 947555 947563, overlap 947563 TAAACTCCTATTTAA CTTATAAA TTAT TTCATAAG TTTTTTTGTTTTATT TERM 1432 947652 - 947603 - f 100 -18.4 -5.36441 | opp_overlap 947608 947648, overlap 947606 947647 947648 TTTGTATATAAAAAA TAAGACCTTTGTTTTAACAAAT AATAAA ATTTGTTAAAACAAAGGTCTTG CCCCAAGATTTTTAT TERM 1433 947649 - 947606 - f 100 -20.1 -4.77122 | opp_overlap 947608 947648, overlap 947603 947647 947648 GTATATAAAAAATAA GACCTTTGTTTTAACAAAT AATAAA ATTTGTTAAAACAAAGGTC TTGCCCCAAGATTTT TERM 1434 947608 - 947647 + F 100 -16.9 -3.02043 | opp_overlap 947606 947603 ATATAAAAAATAAGA CCTTTGTTTTAACAAAT AATAAA ATTTGTTAAAACAAAGG TCTTGCCCCAAGATT TERM 1435 947648 - 947660 + F 80 -6.3 -5.1383 | opp_overlap 947606 947603 947648 947647 TTGTTAAAACAAAGG TCTTG CCC CAAGA TTTTTATATATTCTT TERM 1436 947735 - 947719 - f 80 -9.5 -3.16564 | TGTCGATTTGATGAA CAAAGCT TAA AGCTTTG ACGAGCTACTCCCCT TERM 1437 948031 - 948049 + F 70 -2.5 -5.5762 | overlap 948033 CTACTAAAGCTTATT TGTATGT CTATT ACATATA TTTTTTATATTTGCT cobC 948194 - 948808 + | alpha-ribazole phosphatase TERM 1438 949013 - 948993 - g 82 -7.1 -4.73108 | TTGACAAAAGGAAAA TTATAATTA GCG TAATTATAA CAGGTGTCATCTTAT TERM 1439 950345 - 950330 - g 70 -3.9 -5.1101 | GTAGGACCTAAAAAA CCAGC GCCTAA GCCGG TAGAACCAAAAAAAG CLI_0901 948953 - 950515 + | vanW family protein TERM 1440 950674 - 950618 - f 90 -4.6 -6.28401 | overlap 950662 CAAAAAATAAAAAAA GAGACACCCTTTCGATAATATGTT AAGTGATGA AATAGAACATAGAAAGGGTGTCTC TCATGAATATTATCC cobS 950915 - 951661 + | cobalamin synthase CLI_0903 951898 - 952683 + | hypothetical protein CLI_0904 952839 - 953111 + | hypothetical protein CLI_0905 953253 - 953435 + | hypothetical protein TERM 1441 953640 - 953627 - g 86 -5.3 -5.50723 | GTAGCAAAACAAAAA GGTTT TTAC AAACC AGCAGCACAAGCTTC CLI_0906 953453 - 953701 + | hypothetical protein CLI_0907 954270 - 955619 + | hypothetical protein TERM 1442 955645 - 955674 + T 100 -9.6 -5.71712 | opp_overlap 955645 ATATGCTGTTGAAAA TATTACTGAAAA TTAATT TTTTCAGTAATA TTTTTTTATGTGCCC TERM 1443 955674 - 955645 - T 86 -9.6 -4.08394 | opp_overlap 955645 ATATGCTGTTGAAAA TATTACTGAAAA TTAATT TTTTCAGTAATA TTTTTTTATGTGCCC TERM 1444 955722 - 955747 + T 73 -9.1 -2.83082 | opp_overlap 955722, overlap 955721 955724 GTAATCATAAAAAAA CAGCTAACTCA TTTT TGAATTAGCTG CTTCTATGTATTTAA TERM 1445 955747 - 955722 - T 100 -11.3 -5.71983 | opp_overlap 955721 955722 955724 GTAATCATAAAAAAA CAGCTAACTCA TTTT TGAATTAGCTG CTTCTATGTATTTAA CLI_0908 956129 - 955797 - | CGGC domain-containing protein CLI_0909 956414 - 956767 + | putative 6-pyruvoyl tetrahydropterin synthase TERM 1446 957234 - 957220 - g 88 -4.4 -5.73339 | ACAATCATAAAAAAA TTAAAA CGG TTTTAA GAGATGGAAGAGAAA folP 956871 - 958058 + | dihydropteroate synthase CLI_0911 958221 - 958472 + | hypothetical protein folK 958573 - 959028 + | 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase CLI_0913 959147 - 959587 + | heat shock protein TERM 1447 959725 - 959686 - f 100 -15.4 -3.9644 | opp_overlap 959688 959692, overlap 959688 959692 959720 GTGTTAATATAATAA TATAAATTAGTGTAGGAT ATAT ATCCTACACTAATTTATT ATAAAATTTTGCACA TERM 1448 959688 - 959723 + F 100 -18 -3.42366 | opp_overlap 959688 959686 959692 959720, overlap 959692 GTTAATATAATAATA TAAATTAGTGTAGGAT ATAT ATCCTACACTAATTTA TTATAAAATTTTGCA TERM 1449 959723 - 959688 - f 100 -18 -3.56921 | opp_overlap 959688 959692, overlap 959686 959692 959720 GTTAATATAATAATA TAAATTAGTGTAGGAT ATAT ATCCTACACTAATTTA TTATAAAATTTTGCA TERM 1450 959719 - 959692 - f 100 -14.4 -4.38447 | opp_overlap 959688 959692, overlap 959688 959686 ATATAATAATATAAA TTAGTGTAGGAT ATAT ATCCTACACTAA TTTATTATAAAATTT TERM 1451 959692 - 959719 + F 100 -14.4 -4.33851 | opp_overlap 959692 959688 959686, overlap 959688 ATATAATAATATAAA TTAGTGTAGGAT ATAT ATCCTACACTAA TTTATTATAAAATTT TERM 1452 959797 - 959810 + F 73 -2.4 -5.74086 | opp_overlap 959797 959807 ATAAAAGTAATTAGA GCAA AAAAAA TTGC TTTTTTATTTAATTT TERM 1453 959838 - 959807 - f 76 -2.6 -5.90981 | gap 1, opp_overlap 959797, overlap 959797 TTAGAGCAAAAAAAA TTGCTTTTTTATTTA ATT TTAATAAAAAA-CAA TCAAATATACTTATC CLI_0914 959944 - 961233 + | MerR family transcriptional regulator TERM 1454 961254 - 961241 - f 70 -2.5 -5.56573 | overlap 961235 961244 AGAAATAAATAAAAA TTATT TTAA AATAA AAAATCAATTGTTAA CLI_0915 961288 - 962463 + | exopolysaccharide biosynthesis protein TERM 1455 962509 - 962548 + F 85 -11.2 -2.79796 | opp_overlap 962514, overlap 962514 GGTTAAAAATATTTA TTAGATTATAAGTAAGTA GAAA TATTTACTTATAATTTAA TCTAATAAAGTAAGC TERM 1456 962514 - 962543 + F 81 -8.9 -3.86202 | opp_overlap 962514, overlap 962509 AAAATATTTATTAGA TTATAAGTAAGTA GAAA TATTTACTTATAA TTTAATCTAATAAAG CLI_0916 962623 - 963744 + | putative pleiotropic regulatory protein TERM 1457 964438 - 964406 - f 86 -9.2 -4.17425 | opp_overlap 964406, overlap 964395 AGAATCATTCTAAAA CACCCCATTATTCA CGGAT TGAATTTTGGGGTG TTTTTAAGTCACAGT TERM 1458 964406 - 964438 + F 93 -9.2 -4.66163 | opp_overlap 964406 964395 AGAATCATTCTAAAA CACCCCATTATTCA CGGAT TGAATTTTGGGGTG TTTTTAAGTCACAGT TERM 1459 964446 - 964469 + F 85 -10.4 -3.09635 | opp_overlap 964395 TTGGGGTGTTTTTAA GTCACAGTCT GATT AGATTGTGAC TTAACTGATAACACT CLI_0917 964706 - 964900 + | hypothetical protein TERM 1460 965185 - 965156 - f 90 -10.9 -3.18735 | opp_overlap 965156 965164, overlap 965164 GTAATATTTTACGAA TTAAAAAAGCTGC TATA GCAGCTTTTTTTA AATTTCATAAAATTA TERM 1461 965156 - 965186 + F 76 -9.3 -2.85841 | gap 1, opp_overlap 965156 965164, overlap 965164 GTAATATTTTACGAA TTAAAAAA-GCTGC TATA GCAGCTTTTTTTAA ATTTCATAAAATTAT TERM 1462 965177 - 965164 - f 100 -8.1 -5.30155 | opp_overlap 965156 965164, overlap 965156 TTACGAATTAAAAAA GCTGC TATA GCAGC TTTTTTTAAATTTCA TERM 1463 965164 - 965177 + F 100 -8.1 -5.58209 | opp_overlap 965164 965156, overlap 965156 TTACGAATTAAAAAA GCTGC TATA GCAGC TTTTTTTAAATTTCA CLI_0918 965343 - 965855 + | ECF subfamily RNA polymerase sigma factor TERM 1464 966186 - 966171 - g 74 -6.2 -4.36508 | TGATAAAAATAAGAA TGACTT TTCT AAGTCA GCTGAGGATAAGGGG CLI_0919 965860 - 967023 + | hypothetical protein TERM 1465 967105 - 967137 + T 70 -3.4 -5.27938 | opp_overlap 967104 967107 GAATAGTTATTCAAG CACCGCATTATTCA TGAAT TGAATTTTACGGTG TTTTTGTTTCGCAAT TERM 1466 967306 - 967284 - T 77 -7.1 -4.46854 | gap 1, opp_overlap 967284, overlap 967278 ATATAAAAGTCAAAA GGACTA-CCT TATG AGGATAGTCC TTATTTAACTATTTA TERM 1467 967284 - 967306 + T 73 -7.1 -4.02707 | gap 1, opp_overlap 967278 967284 ATATAAAAGTCAAAA GGACTA-CCT TATG AGGATAGTCC TTATTTAACTATTTA CLI_0920 967869 - 967315 - | putative flavoredoxin CLI_0921 968192 - 969004 + | non-haem haloperoxidase family protein cadD 969306 - 969974 + | cadmium resistance transporter CadD CLI_0923 970123 - 970539 + | hypothetical protein CLI_0924 970666 - 970803 + | hypothetical protein TERM 1468 970894 - 970867 - T 79 -7.1 -4.6709 | opp_overlap 970869, overlap 970869 TAAAATTAGATAAAA TAGGAGATTAC TGACAT GTAATCTCCTG TGGTATAGATATTAA TERM 1469 970892 - 970869 - T 86 -9.7 -3.92324 | opp_overlap 970869, overlap 970867 AAATTAGATAAAATA GGAGATTAC TGACAT GTAATCTCC TGTGGTATAGATATT TERM 1470 970869 - 970892 + T 76 -9.7 -2.87294 | opp_overlap 970869 970867 AAATTAGATAAAATA GGAGATTAC TGACAT GTAATCTCC TGTGGTATAGATATT CLI_0925 971363 - 970947 - | hypothetical protein CLI_0926 971502 - 971951 + | HTH-type transcriptional regulator LrpC TERM 1471 972443 - 972455 + F 70 -3.5 -5.40072 | TTATCATAAATTTAT TAATA AGA TATTA TTTTTTTGAGGACCC TERM 1472 972590 - 972573 - f 77 -7.1 -4.46652 | overlap 972568 TAAAGAAAAATTAAA TTCGTAA ACTA TTACGAA GATAAAATTAAATAT TERM 1473 972620 - 972649 + F 70 -3.8 -5.26875 | gap 1, opp_overlap 972620 TTAAATTAGTCAAAA TACCGTACTATTT AAAAA GAATA-TACGGTA TTTTTTAGTTCGCAA CLI_0927 972859 - 973251 + | putative lipoprotein TERM 1474 973304 - 973257 - T 70 -5 -4.85545 | opp_overlap 973265, overlap 973249 973259 973265 AGTAAAGTAATAAAA TATTAAAACACCGTAGTATTCA AGTC TGAATTGTACGGTGTTTTTACG TTGTAATATAAATAT TERM 1475 973302 - 973259 - T 93 -9.8 -4.03104 | opp_overlap 973265, overlap 973249 973257 973265 TAAAGTAATAAAATA TTAAAACACCGTAGTATTCA AGTC TGAATTGTACGGTGTTTTTA CGTTGTAATATAAAT TERM 1476 973265 - 973296 + T 93 -8.8 -4.78752 | opp_overlap 973265 973259 973257 AATAAAATATTAAAA CACCGTAGTATTCA AGTC TGAATTGTACGGTG TTTTTACGTTGTAAT TERM 1477 973296 - 973265 - T 89 -8.8 -4.59591 | opp_overlap 973265, overlap 973259 973257 AATAAAATATTAAAA CACCGTAGTATTCA AGTC TGAATTGTACGGTG TTTTTACGTTGTAAT CLI_0928 974316 - 973522 - | putative ABC transporter, permease protein CLI_0929 975252 - 974335 - | ABC transporter, ATP-binding protein CLI_0930 976370 - 975249 - | DNA-binding protein TERM 1478 975870 - 975894 + g 76 -3.6 -5.36441 | TCCCAATGCTATCTC TGCCAATGCT TCCAT AGTATTTGCA TTTTTTATGTCAGAA TERM 1479 976125 - 976135 + g 76 -2.6 -5.62219 | AAATTCATGAGAGAG TTTA CTA TAAA TTTTTTTAATATCTT TERM 1480 976457 - 976467 + H 73 -6.8 -4.3534 | opp_overlap 976457 976464 GGAAAAGTTAACTTA CAGG AAA CCTG TTTTAATAATTAAAG CLI_0931 977993 - 978568 + | acetyltransferase CLI_0932 978734 - 979387 + | pentapeptide repeat-containing protein TERM 1481 979443 - 979413 - T 71 -8.3 -3.05769 | opp_overlap 979439, overlap 979438 TTTTCAAATTAGATA GCCGCACTCCAAT TGAAT ATGAAAGTGCGGC CTAAAAATAGGCAGC TERM 1482 979439 - 979458 + T 93 -7.8 -5.2166 | opp_overlap 979413 979438, overlap 979444 ATTGAATATGAAAGT GCGGCCTA AAAA TAGGCAGC TTTTTTAGATTGTTC CLI_0933 980339 - 979512 - | MerR family transcriptional regulator TERM 1483 981012 - 980998 - g 78 -4.2 -5.41787 | opp_overlap 980999, overlap 980999 TAAAAAAGATAAAAA GTCCCT TTA AGGGAT ACTTTGTTGGAGAAT TERM 1484 981011 - 980999 - g 74 -7.7 -3.81412 | opp_overlap 980999, overlap 980998 AAAAAAGATAAAAAG TCCCT TTA AGGGA TACTTTGTTGGAGAA CLI_0934 980451 - 981068 + | acetyltransferase CLI_0935 981061 - 981216 + | hypothetical protein CLI_0936 981274 - 981789 + | hypothetical protein CLI_0937 981852 - 982376 + | acetyltransferase TERM 1485 982636 - 982682 + T 70 -5 -4.87803 | gap 1, opp_overlap 982636, overlap 982631 AAAACTTTTAGAAAA TAGATAACTATAAAAATAA AGTACTCTAG TTATTTT-ATAGTTATCTA TTTTATTTAAAAGTA CLI_0938 983641 - 982940 - | hypothetical protein TERM 1486 983906 - 983873 - R 100 -12 -4.84527 | opp_overlap 983873 983877 983880, overlap 983877 TTTATAGATGAAAAA TAAAGAACTCCCTA AATCAA TAGGAAGTTCTTTA TGTAATCTTATTTAG TERM 1487 983873 - 983906 + r 82 -9.8 -2.9961 | opp_overlap 983873 983877, overlap 983877 983880 TTTATAGATGAAAAA TAAAGAACTCCCTA AATCAA TAGGAAGTTCTTTA TGTAATCTTATTTAG TERM 1488 983902 - 983877 - R 91 -8.4 -4.94262 | opp_overlap 983873 983877 983880, overlap 983873 TAGATGAAAAATAAA GAACTCCCTA AATCAA TAGGAAGTTC TTTATGTAATCTTAT CLI_0939 984226 - 983918 - | putative transcriptional regulator TERM 1489 984285 - 984273 - H 72 -6.3 -4.4009 | opp_overlap 984258 984273 984271 GTTTACTTGACAAAA GTAAG CTA CTTAC TATATTATACCAATA CLI_0940 984354 - 984983 + | nitroreductase family protein TERM 1490 985041 - 985072 + F 79 -3.8 -5.77632 | AATAAATTTTTTAAA TATCGTATTGTTCA GAAA TGAATTTTACGATA TTTTTTTATAATTTT CLI_0941 985270 - 986712 + | lipase TERM 1491 986768 - 986731 - T 100 -14.5 -3.65071 | opp_overlap 986736, overlap 986736 GATGAAATAATAAGA TAAAACTAGCTTATCAT ATTT ATGATAAGCTAGTTTTT TATACTGGAATTTAT TERM 1492 986763 - 986736 - T 100 -14.4 -4.83518 | opp_overlap 986736, overlap 986731 AATAATAAGATAAAA CTAGCTTATCAT ATTT ATGATAAGCTAG TTTTTTATACTGGAA TERM 1493 986736 - 986763 + T 100 -14.4 -5.31275 | opp_overlap 986736 986731 AATAATAAGATAAAA CTAGCTTATCAT ATTT ATGATAAGCTAG TTTTTTATACTGGAA oxdD 988081 - 986873 - | oxalate decarboxylase TERM 1494 988244 - 988254 + r 70 -2.6 -5.53436 | opp_overlap 988244, overlap 988251 TGTAGAAAGTATAAA TTTA TTT TAAA TTTTTTATATTATGT TERM 1495 988359 - 988332 - R 90 -7.8 -4.96996 | opp_overlap 988332 GTCAAATAAAACAAA GCTGTGGAAG GGGTAATT CTTCCACAAC TTTTACATCAAATAA TERM 1496 988332 - 988359 + r 73 -7 -4.1899 | opp_overlap 988332 GTCAAATAAAACAAA GCTGTGGAAGGG GTAA TTCTTCCACAAC TTTTACATCAAATAA CLI_0943 989033 - 988455 - | decarboxylase family protein CLI_0944 989546 - 989091 - | hypothetical protein TERM 1497 990469 - 990459 - g 74 -3.2 -5.39721 | CTATTAGAGAAAAAA TCCC AGA GAGA ATTATGGGCATAGCA CLI_0945 989660 - 990547 + | LysR family transcriptional regulator TERM 1498 991413 - 991440 + T 82 -8.6 -4.49311 | opp_overlap 991413 ACAAATATTTAAAAA GGTATAGAACTA AATT TAATTCTATACC TTTTGTGCTAGTACT TERM 1499 991440 - 991413 - T 100 -10.8 -4.7889 | opp_overlap 991413 ACAAATATTTAAAAA GGTATAGAACTA AATT TAATTCTATACC TTTTGTGCTAGTACT CLI_0947 991707 - 991468 - | hypothetical protein CLI_0948 992367 - 991900 - | hypothetical protein CLI_0949 992800 - 992372 - | hypothetical protein TERM 1500 992875 - 992860 - H 72 -7.6 -3.63276 | opp_overlap 992862 TTATAACAATTAGAA CATGAC ATTA GTCATG TTAGGAGGTCTTATG CLI_0950 992888 - 993577 + | hypothetical protein TERM 1501 993636 - 993580 - T 100 -15.1 -3.36131 | opp_overlap 993582 993588 993592 993595, overlap 993592 993595 AAAATCACTTTAGAA TATAATATTAAATAATCCAAAGATA TCTTAAC TATCTTTGGATTATTCATTATTATA CTATAAAGTTATGAT TERM 1502 993582 - 993634 + T 83 -11.1 -2.65271 | opp_overlap 993580 993592 993595, overlap 993588 993592 993595 AATCACTTTAGAATA TAATATTAAATAATCCAAAGATA TCTTAAC TATCTTTGGATTATTCATTATTA TACTATAAAGTTATG TERM 1503 993588 - 993628 + T 93 -10.1 -3.87104 | opp_overlap 993580 993592 993595, overlap 993582 993592 993595 TTTAGAATATAATAT TAAATAATCCAAAGATA TCTTAAC TATCTTTGGATTATTCA TTATTATACTATAAA TERM 1504 993592 - 993624 + T 95 -10.9 -3.59279 | opp_overlap 993592 993580 993595, overlap 993588 993582 993595 GAATATAATATTAAA TAATCCAAAGATA TCTTAAC TATCTTTGGATTA TTCATTATTATACTA TERM 1505 993624 - 993592 - T 100 -10.9 -4.00882 | opp_overlap 993588 993582 993592 993595, overlap 993580 993595 GAATATAATATTAAA TAATCCAAAGATA TCTTAAC TATCTTTGGATTA TTCATTATTATACTA TERM 1506 993621 - 993595 - T 79 -8.2 -4.10459 | opp_overlap 993592 993588 993582 993595, overlap 993592 993580 TATAATATTAAATAA TCCAAAGATA TCTTAAC TATCTTTGGA TTATTCATTATTATA TERM 1507 993595 - 993621 + T 78 -8.2 -3.91564 | opp_overlap 993595 993592 993580, overlap 993592 993588 993582 TATAATATTAAATAA TCCAAAGATA TCTTAAC TATCTTTGGA TTATTCATTATTATA CLI_0951 994059 - 993637 - | hypothetical protein TERM 1508 993762 - 993772 + g 72 -4 -5.09225 | overlap 993759 AATCAGGAATTTTTT TGAT AAA ATCA TTTTTTAAATCAAAT TERM 1509 993853 - 993874 + g 71 -5.9 -4.40561 | overlap 993855 ATTTCCATTAGATGG TATAGTGGT AAAT GCCACTATG TTGTTTTTAGCAAAC TERM 1510 994846 - 994836 - g 70 -5.4 -4.55798 | GAGTTTAAATCAAAA CCAT TAG ATGG AAGTGGATGGATAGA CLI_0952 994182 - 995114 + | hypothetical protein TERM 1511 995269 - 995231 - T 90 -7.6 -4.91511 | opp_overlap 995219 995231, overlap 995218 ATCTCACCACAAAAA TGTGGAGATTTAGCCA GGCTAAT TGGATAAATTTCCACA TTTTTGTGTTTAAGA TERM 1512 995231 - 995269 + T 100 -10.5 -5.19879 | opp_overlap 995218 995231, overlap 995219 ATCTCACCACAAAAA TGTGGAGATTTAGCCAG GCTAA TTGGATAAATTTCCACA TTTTTGTGTTTAAGA CLI_0953 995792 - 995322 - | hypothetical protein CLI_0954 996553 - 995792 - | hypothetical protein TERM 1513 996653 - 996666 + H 76 -2.5 -5.86976 | opp_overlap 996649 996653, overlap 996649 TATATTAGACATATA TAATT ATAT AATTA TTTTTTATTTTATAC CLI_0955 996932 - 997078 + | hypothetical protein CLI_0956 997740 - 997240 - | putative peptide deformylase CLI_0957 997973 - 999409 + | GntR family transcriptional regulator CLI_0958 999490 - 1000587 + | AraC family transcriptional regulator CLI_0959 1001404 - 1000886 - | nitroreductase family protein CLI_0960 1002452 - 1001646 - | iron-sulfur cluster-binding protein TERM 1514 1003807 - 1003789 - g 76 -5.4 -5.11613 | opp_overlap 1003789 1003786 AGATGATTGAAAAAA TACTTAAC ATA ATTAAGTA TTATTTTAACTTAGA CLI_0961 1003242 - 1004075 + | transcription antiterminator TERM 1515 1004101 - 1004151 + F 100 -13.8 -5.57396 | opp_overlap 1004094 1004109 ACTTTAAATAGGCTA TACCTAAATAAAAATTTACTAGTT CTA GACTAATGAATTTTTATTTGGGTA TTTTTTATTGCTTAT CLI_0962 1004200 - 1006077 + | PTS system, beta-glucoside-specific, IIABC component CLI_0963 1006156 - 1007577 + | glycosy hydrolase family protein CLI_0964 1007705 - 1007911 + | hypothetical protein TERM 1516 1007985 - 1007968 - T 100 -8.5 -5.5074 | opp_overlap 1007968 TAATGTAATAAAAAA TAGTAGC AGGG GCTACTA TTTTTTTGAGATTTT TERM 1517 1007968 - 1007985 + T 100 -8.5 -5.51165 | opp_overlap 1007968 TAATGTAATAAAAAA TAGTAGC AGGG GCTACTA TTTTTTTGAGATTTT mraY-1 1009052 - 1008099 - | phospho-N-acetylmuramoyl-pentapeptide-transferase TERM 1518 1008347 - 1008331 - G 74 -9.5 -2.82516 | TTTTTCAGTATCATA GCTATTG TTG CAATAGC ACCACCAAGGGCTAA TERM 1519 1008729 - 1008744 + g 88 -3.3 -6.08563 | AATCATTTTTCCTTT TGAAG TTAATC CTTCA TTTTTTTTATGTATT TERM 1520 1009690 - 1009680 - g 89 -4 -5.86465 | overlap 1009672 AATAACACAAAAAAA TCTT GCT AAGA AAATAGGTGTTTCAG CLI_0966 1009480 - 1010340 + | putative DNA-binding protein CLI_0967 1010476 - 1011153 + | DNA-binding response regulator TERM 1521 1011186 - 1011221 + G 73 -5.7 -4.60808 | gap 1 AAATTAGAATATTTT TTATTGCTACT-TTGA GTATA TCTATAGTAGCAATAA TTTGTATTTTTATGA CLI_0968 1011155 - 1012156 + | sensor histidine kinase CLI_0969 1012271 - 1012954 + | ABC transporter, ATP-binding protein TERM 1522 1012950 - 1012933 - f 70 -7 -3.77832 | TGGTAAAGTTAAGAA GGACGA GGTGAT TCGTCC ATGAATATAGTAAAC CLI_0970 1012951 - 1015566 + | ABC transporter, permease protein TERM 1523 1015594 - 1015576 - f 83 -6.1 -5.3798 | GAATAATAATAAAAA GTTACAT AACTA ATGTAAC TTAAAAAATAGATAT CLI_0971 1016087 - 1016650 + | TetR family transcriptional regulator CLI_0972 1016672 - 1017763 + | radical SAM domain-containing protein TERM 1524 1018013 - 1017982 - T 81 -10.3 -2.58362 | opp_overlap 1017982 1017985 1018012, overlap 1017974 1017980 1017985 TAAAAGATTAAAAGT TAAGGAGGATATG GTTTCA CACACCCTCCTTA TAAATTCTGACAATT TERM 1525 1018010 - 1017985 - T 70 -7.6 -3.41195 | opp_overlap 1017982 1017985, overlap 1017982 1017980 AAGATTAAAAGTTAA GGAGGATATG GTTTCA CACACCCTCC TTATAAATTCTGACA CLI_0973 1018466 - 1018011 - | hypothetical protein CLI_0974 1019750 - 1018578 - | MerR family transcriptional regulator TERM 1526 1020221 - 1020191 - H 72 -7.7 -3.65529 | opp_overlap 1020196 1020199, overlap 1020196 ATAGCCTTACTTAAA GAAAAGAACCCTA ATAAA TAGGGCTCTTTTT TATGTGGAATTTTCT TERM 1527 1020196 - 1020216 + H 81 -5.4 -5.37043 | opp_overlap 1020196 1020191, overlap 1020199 CTTACTTAAAGAAAA GAACCCTA ATAAA TAGGGCTC TTTTTTATGTGGAAT TERM 1528 1020216 - 1020196 - H 86 -7.6 -4.90778 | opp_overlap 1020196 1020199, overlap 1020191 CTTACTTAAAGAAAA GAACCCTA ATAAA TAGGGCTC TTTTTTATGTGGAAT CLI_0975 1020659 - 1021357 + | putative propanediol utilization protein PduB CLI_0976 1021647 - 1022993 + | hypothetical protein TERM 1529 1023194 - 1023143 - f 93 -12.4 -3.28924 | opp_overlap 1023144 1023146, overlap 1023144 1023146 1023172 TACGTCCCTGGATAA CGATTTCTAAGCTTCAGATGGAGT AAAA ACTCCCTCTGAAGCCAAGAACTCT GTCTATAGAAAAATT TERM 1530 1023144 - 1023193 + F 100 -13.7 -2.98942 | opp_overlap 1023143 1023144 1023146 1023172, overlap 1023146 ACGTCCCTGGATAAC GATTTCTAAGCTTCAGATGGAGT AAAA ACTCCCTCTGAAGCCAAGAACTC TGTCTATAGAAAAAT TERM 1531 1023193 - 1023144 - f 100 -15.9 -2.57211 | opp_overlap 1023144 1023146, overlap 1023143 1023146 1023172 ACGTCCCTGGATAAC GATTTCTAAGCTTCAGATGGAGT AAAA ACTCCCTCTGAAGCCAAGAACTC TGTCTATAGAAAAAT TERM 1532 1023146 - 1023191 + F 85 -10.5 -3.05022 | opp_overlap 1023144 1023143 1023146 1023172, overlap 1023144 GTCCCTGGATAACGA TTTCTAAGCTTCAGATGGAGT AAAA ACTCCCTCTGAAGCCAAGAAC TCTGTCTATAGAAAA TERM 1533 1023191 - 1023146 - f 91 -12.7 -2.82623 | opp_overlap 1023146 1023144, overlap 1023144 1023143 1023172 GTCCCTGGATAACGA TTTCTAAGCTTCAGATGGAGT AAAA ACTCCCTCTGAAGCCAAGAAC TCTGTCTATAGAAAA TERM 1534 1023447 - 1023431 - g 76 -9.5 -3.05495 | overlap 1023430 AAAAAATGCAGAAAT CTCCTTT CTC AAAGGAG GAAGAAATACAAATT CLI_0977 1023310 - 1024422 + | choloylglycine hydrolase CLI_0978 1024495 - 1025364 + | AraC family transcriptional regulator TERM 1535 1025490 - 1025468 - T 75 -9.2 -2.57935 | opp_overlap 1025468, overlap 1025467 1025466 GACATAAGTAAAAGG GGGATGGTTT AAT AAAACATCCC TTTTTATATTATTTA TERM 1536 1025468 - 1025490 + T 100 -9.2 -5.23765 | opp_overlap 1025468 1025467 1025466 GACATAAGTAAAAGG GGGATGGTTT AAT AAAACATCCC TTTTTATATTATTTA CLI_0979 1026735 - 1025503 - | peptidyl-arginine deiminase TERM 1537 1027799 - 1027811 + G 75 -4.1 -5.3321 | overlap 1027800 ATTATATTAATTTTT TCATG GCT CATGG TTTTTATTGTTGGTT CLI_0981 1027670 - 1028533 + | DMT family permease CLI_0982 1028891 - 1029478 + | hypothetical protein CLI_0983 1029936 - 1029559 - | ErfK/YbiS/YcfS/YnhG family protein TERM 1538 1029602 - 1029626 + g 80 -8.7 -3.82378 | overlap 1029603 GGAACAATGTTGCTT AGTTCAATAAC TTG GTTATTGAACA TTCTTATACATCCGT TERM 1539 1029603 - 1029625 + g 100 -12.2 -2.88945 | overlap 1029602 GAACAATGTTGCTTA GTTCAATAAC TTG GTTATTGAAC ATTCTTATACATCCG TERM 1540 1030079 - 1030036 - R 100 -7.6 -5.63857 | opp_overlap 1030036 AAAAATTGAAAAAAA TAGATGCAACTACAATAATT TTAT AAGAACTGTAGTAGCATCTA TTTTTTAATTAGCTA TERM 1541 1030036 - 1030079 + r 81 -5.4 -5.28481 | opp_overlap 1030036 AAAAATTGAAAAAAA TAGATGCAACTACAATAATT TTAT AAGAACTGTAGTAGCATCTA TTTTTTAATTAGCTA CLI_0984 1030439 - 1030110 - | hypothetical protein TERM 1542 1030566 - 1030542 - R 73 -7.2 -4.02999 | opp_overlap 1030542, overlap 1030535 CAAAAATATAGCAAA GCACTTGG GGGGTTAAT CCAAGTGC TTTTTATTTAGAAAA TERM 1543 1030542 - 1030566 + r 100 -7.9 -5.27335 | opp_overlap 1030542 1030535 CAAAAATATAGCAAA GCACTTGGG GGGTTAA TCCAAGTGC TTTTTATTTAGAAAA CLI_0985 1031011 - 1030679 - | hypothetical protein CLI_0987 1031672 - 1032442 + | hypothetical protein TERM 1544 1033062 - 1033072 + G 75 -4 -5.18715 | TTTTAATGCCAGTTT TTTC AGT GAAA TTTTATTCTTTTTAT TERM 1545 1034335 - 1034323 - g 72 -6.3 -4.29929 | AGGAAATTTAATAAA TGTAG GCT CTACA GGAAAAGAAGAAAAT CLI_0988 1032980 - 1034587 + | hypothetical protein CLI_0989 1037311 - 1034951 - | ABC transporter, ATP-binding/permease protein TERM 1546 1037355 - 1037396 + H 82 -8.3 -4.49958 | opp_overlap 1037348 1037361, overlap 1037357 1037361 AGTATATATAAAGTT TTTAAACTGAATGTAAACT GGTG AGTTTATATGCAGTTTATA TTTATTTGATAAAGT TERM 1547 1037357 - 1037394 + H 100 -10.9 -3.85603 | opp_overlap 1037348 1037361, overlap 1037355 1037361 TATATATAAAGTTTT TAAACTGAATGTAAACT GGTG AGTTTATATGCAGTTTA TATTTATTTGATAAA TERM 1548 1037361 - 1037390 + H 77 -7.3 -4.50993 | opp_overlap 1037361, overlap 1037357 1037355 TATAAAGTTTTTAAA CTGAATGTAAACT GGTG AGTTTATATGCAG TTTATATTTATTTGA TERM 1549 1037555 - 1037542 - g 76 -5.3 -5.11063 | AGTACTTAATAAAAA TGGAT ATAA ATCCA TTGAAGCTAAAGATG CLI_0990 1037471 - 1038142 + | DNA-binding response regulator TERM 1550 1038401 - 1038385 - g 72 -6.6 -4.1822 | TCTGATCTTAACAAA GCAACT AAAGA AGTTGC TAAGGGAAATTTTAA CLI_0991 1038142 - 1039170 + | sensor histidine kinase CLI_0992 1039462 - 1040070 + | BioY family protein TERM 1551 1040144 - 1040170 + F 95 -5.3 -5.99154 | ATGTAATTTTATAAA CTATTAAGTGT CATGA ATACTTAGTAG TTTTTTTATTTGATA TERM 1552 1040308 - 1040269 - f 73 -8.8 -2.90615 | gap 1, opp_overlap 1040276, overlap 1040272 1040273 1040275 ATTTTTCCTAAAGGA TAAC-GACTTCTAAGGAGT AAA ACTCCTAAGAATTCTGTTA ATAAGCTTTAGTGGG TERM 1553 1040303 - 1040273 - f 79 -9.8 -2.75769 | opp_overlap 1040276, overlap 1040272 1040269 1040275 TTCCTAAAGGATAAC GACTTCTAAGGAGT AAA ACTCCTAAGAATTC TGTTAATAAGCTTTA TERM 1554 1040276 - 1040300 + F 90 -10.1 -3.71552 | opp_overlap 1040275 1040273 1040272 1040269 CTAAAGGATAACGAC TTCTAAGGAGT AAA ACTCCTAAGAA TTCTGTTAATAAGCT TERM 1555 1041966 - 1041936 - g 90 -7.7 -5.252 | gap 1, opp_overlap 1041935 TATTGGTATAAAAAA TCATCGCAG-GAAG GAAA CTTCACTGCTATGA GTAATATAGGTTTTA CLI_0993 1040475 - 1042181 + | hypothetical protein TERM 1556 1042193 - 1042229 + F 100 -13.3 -4.85599 | opp_overlap 1042193 1042197 GTAGATTATAATTGA TATAGGTTACTAAGGAT ATT ATTCTTGGTAGCCTATA TTTTTATCCCATGAC CLI_0994 1042524 - 1043069 + | acetyltransferase TERM 1557 1044208 - 1044198 - g 70 -4 -4.9725 | AGTTTTAGATAAAAA CATT AAA AATG AATGGCATAAAGATA CLI_0995 1043149 - 1044744 + | putative LexA repressor TERM 1558 1044801 - 1044763 - f 87 -10.6 -3.15677 | opp_overlap 1044763 TATATAATTATTGAA CTGTCTTATATTTGTTAT AAT ATAATAAATATAAGGCAG TTTTTTGTTAATATG TERM 1559 1044763 - 1044801 + F 100 -15 -5.5353 | opp_overlap 1044763 TATATAATTATTGAA CTGTCTTATATTTGTTAT AAT ATAATAAATATAAGGCAG TTTTTTGTTAATATG cobU 1045023 - 1045580 + | adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase TERM 1560 1046098 - 1046150 + T 100 -18.3 -2.81464 | opp_overlap 1046101 1046103 1046106, overlap 1046103 ATTTAAATCAGCATG TAAGATAAGGTGATTCAAAATAAAT TAA ATCTATTTTGAATCACCTTATTTTG TGTAATAAATACTAG TERM 1561 1046147 - 1046101 - T 100 -17.8 -3.12402 | opp_overlap 1046098 1046103, overlap 1046103 1046106 TAAATCAGCATGTAA GATAAGGTGATTCAAAATAAAT TAA ATCTATTTTGAATCACCTTATT TTGTGTAATAAATAC TERM 1562 1046103 - 1046145 + T 100 -18.2 -4.57755 | opp_overlap 1046103 1046101 1046106, overlap 1046098 AATCAGCATGTAAGA TAAGGTGATTCAAAATAAAT TAA ATCTATTTTGAATCACCTTA TTTTGTGTAATAAAT TERM 1563 1046145 - 1046103 - T 100 -20.4 -3.1154 | opp_overlap 1046098 1046103, overlap 1046101 1046106 AATCAGCATGTAAGA TAAGGTGATTCAAAATAAAT TAA ATCTATTTTGAATCACCTTA TTTTGTGTAATAAAT TERM 1564 1046142 - 1046106 - T 100 -17.7 -3.69702 | opp_overlap 1046103 1046098, overlap 1046103 1046101 CAGCATGTAAGATAA GGTGATTCAAAATAAAT TAA ATCTATTTTGAATCACC TTATTTTGTGTAATA tipA 1046966 - 1046202 - | transcriptional activator TipA TERM 1565 1046338 - 1046320 - G 77 -9.6 -3.03635 | TAAAGTTCTCCAAGA CCCCTAAA TAT TTCAGGGG TACAATCATAAAAGT CLI_0998 1047494 - 1047363 - | hypothetical protein TERM 1566 1047571 - 1047587 + GH 81 -7.3 -4.60041 | opp_overlap 1047571 1047569 AAAAGGAATATAATA TAGGCGT AGT ATGCCTA TTTTTAACAATGCAT CLI_0999 1047486 - 1047611 + | hypothetical protein TERM 1567 1047634 - 1047599 - fH 76 -9.2 -2.77895 | opp_overlap 1047602, overlap 1047598 1047602 CCTATTTTTAACAAT GCATTGGCTATAAACT CTAA AGTTTATAGCCAATTT TTATATTGAAAAATA TERM 1568 1047602 - 1047631 + FH 100 -15.3 -5.0916 | opp_overlap 1047602 1047599 1047598 ATTTTTAACAATGCA TTGGCTATAAACT CTAA AGTTTATAGCCAA TTTTTATATTGAAAA TERM 1569 1047631 - 1047602 - fH 100 -15.3 -2.65808 | opp_overlap 1047602, overlap 1047599 1047598 ATTTTTAACAATGCA TTGGCTATAAACT CTAA AGTTTATAGCCAA TTTTTATATTGAAAA cobQ 1047672 - 1049153 + | cobyric acid synthase TERM 1570 1050005 - 1049995 - g 74 -5.4 -4.8543 | CAAGTGGTAGAAAAA CCTA CTA TAGG AGATAAAATAAAGGA cobD 1049155 - 1050117 + | cobalamin biosynthesis protein TERM 1571 1050810 - 1050793 - g 79 -8.5 -3.90608 | AAACAGAAGGAATAA TATTGGG AAAT CCCAATA ATCCCAATGGATCAG TERM 1572 1050885 - 1050875 - g 78 -4 -5.42259 | opp_overlap 1050875, overlap 1050878 CTACTGTGAAAAAAA CAAT AAA ATTG TAATTTTAGATGAAG CLI_1002 1050336 - 1051424 + | aminotransferase family protein cbiM 1051609 - 1052328 + | cobalt transport protein CbiM cbiN 1052332 - 1052631 + | cobalt transport protein TERM 1573 1052710 - 1052660 - gf 100 -10.9 -4.83615 | gap 1, opp_overlap 1052660 1052676 1052683 CATCCTTTAGAAAAA GCAATTTTGAGTATAATCCCAA TTGTAATT TTGGGATT-TACTCAAAACTAC ATAATTGTTTTTTGC TERM 1574 1052788 - 1052778 - gf 86 -2.6 -6.04419 | overlap 1052770 1052779 AAAATAATAAAAAAA TTTT TAC AAAA ATAACTCTAGAGGTA TERM 1575 1053224 - 1053235 + GF 71 -3 -5.23316 | AGAGATTTTGATTTT TCTT ATAT AAGA TTTTTTAGTATACTC cbiQ 1052594 - 1053292 + | cobalt ABC transporter, permease protein CbiQ TERM 1576 1053273 - 1053283 + F 70 -2.6 -5.52384 | overlap 1053264 TTATTTTAATGCTAT TATT AGT AATA TTTTTTTAATAAAAA CLI_1006 1053740 - 1054387 + | precorrin-2 dehydrogenase hemC 1054356 - 1055228 + | porphobilinogen deaminase TERM 1577 1055591 - 1055575 - g 73 -3.7 -5.20222 | ATGAAATAAATAAAA TGCTAGT TAA ATTAGCA AAACAAGGTCATATT cobA/hemD 1055364 - 1056824 + | uroporphyrinogen III synthase/methyltransferase TERM 1578 1056949 - 1056933 - f 73 -5.3 -4.86001 | opp_overlap 1056933 ACTATGTTAGAAAAA TATAATT ATT AATTATA TTGTGGGGGTATGAA CLI_1009 1056970 - 1057152 + | hypothetical protein TERM 1579 1058141 - 1058160 + G 74 -9.4 -2.79694 | opp_overlap 1058141 1058152, overlap 1058137 GTGCAGATATAGTAA TGGTAAAG CCAG CTTTACCA TACTTAGATGTTATA TERM 1580 1058160 - 1058141 - g 78 -9.4 -3.35197 | opp_overlap 1058141 1058137, overlap 1058152 GTGCAGATATAGTAA TGGTAAAG CCAG CTTTACCA TACTTAGATGTTATA hemB 1057414 - 1058388 + | delta-aminolevulinic acid dehydratase TERM 1581 1058558 - 1058594 + F 100 -16.1 -2.87522 | overlap 1058560 TTAGTTTAAGGCTGA GAGTGGAGTTCTTTCAT CTC ATGAGAAAACTCCACTC TGTACTCTGAATTAA TERM 1582 1058560 - 1058592 + F 93 -12.9 -2.98491 | overlap 1058558 AGTTTAAGGCTGAGA GTGGAGTTCTTTCAT CTC ATGAGAAAACTCCAC TCTGTACTCTGAATT TERM 1583 1059541 - 1059522 - g 77 -5.8 -4.88163 | overlap 1059524 TTAAGAGAAAACAAA TCTATGCT AAGT AGCATAAA TAAAGAATTAAATAA cobB 1058622 - 1059944 + | cobyrinic acid a,c-diamide synthase CLI_1012 1060098 - 1060793 + | hypothetical protein CLI_1013 1060855 - 1061439 + | hexapeptide repeat-containing transferase cobH 1061566 - 1062192 + | precorrin-8X methylmutase CLI_1015 1062221 - 1062961 + | hypothetical protein CLI_1016 1063056 - 1064330 + | transcriptional regulator, MerR family protein CLI_1017 1064423 - 1064896 + | hypothetical protein CLI_1018 1064923 - 1065348 + | acetyltransferase CLI_1019 1065568 - 1065819 + | hypothetical protein TERM 1584 1066040 - 1066030 - g 71 -6.8 -3.93061 | opp_overlap 1066029 ATTTCAAAATGTAAA CCTC ATG GAGG AACTTTTATAAAAGA CLI_1020 1065847 - 1066368 + | nitroreductase family protein CLI_1021 1066438 - 1066731 + | hypothetical protein CLI_1022 1066824 - 1067417 + | hypothetical protein TERM 1585 1067497 - 1067529 + G 84 -7 -5.31275 | overlap 1067499 CCACAGGTTCCTGTG CAGCTGCAGCAGCT AAGGC AGCTGCTATAGCTC TTTTTTATAATAAAA TERM 1586 1067499 - 1067527 + G 91 -9.6 -4.29153 | overlap 1067497 ACAGGTTCCTGTGCA GCTGCAGCAGCT AAGGC AGCTGCTATAGC TCTTTTTTATAATAA cbiD 1067430 - 1068509 + | cobalt-precorrin-6A synthase cbiE 1068710 - 1069381 + | precorrin-6y C5,15-methyltransferase (decarboxylating), CbiE subunit CLI_1025 1069566 - 1069946 + | hypothetical protein cbiT 1070010 - 1070588 + | precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit TERM 1587 1070909 - 1070889 - g 72 -2.6 -5.44721 | ATGATGGTAAAAAAA CACTATTT AATAA AAATGGTG CATTAGATGAAACTA CLI_1027 1070585 - 1071016 + | hypothetical protein TERM 1588 1071501 - 1071483 - g 70 -9 -2.57132 | opp_overlap 1071463 1071482, overlap 1071482 TGTTGTTTTGATAAT TGGTTTAA ATT TTAAACCA CATATAATAGCAGTA TERM 1589 1071603 - 1071574 - g 93 -6 -5.71712 | opp_overlap 1071574 GTTGAGATAAAAAAA TTAACTAATATA GTAAAT CATATTAGTTAA TTATTTAGTATTTAG CLI_1028 1071052 - 1071603 + | hypothetical protein CLI_1029 1071931 - 1071767 - | hypothetical protein CLI_1030 1072103 - 1072294 + | hypothetical protein TERM 1590 1072366 - 1072343 - f 77 -7 -4.45517 | opp_overlap 1072335 AAAGTATTTATAAAA TTATTTATAA TTGT TTATAAATAA GGAACATTATTTTTA CLI_1031 1072452 - 1072904 + | hypothetical protein CLI_1032 1072964 - 1073305 + | hypothetical protein CLI_1033 1073373 - 1073921 + | acetyltransferase CLI_1034 1073971 - 1074363 + | hypothetical protein cobI 1074454 - 1075170 + | cobalt-precorrin-2 C(20)-methyltransferase cobM 1075458 - 1076216 + | precorrin-4 C11-methyltransferase TERM 1591 1076459 - 1076449 - g 88 -4 -5.66989 | opp_overlap 1076449 GAAATAGTAAAAAAA TCTT TTC AAGA TTATGATGCAATAAT cbiG 1076194 - 1077303 + | cobalamin biosynthesis protein CbiG cobJ 1077581 - 1078312 + | precorrin-3B C17-methyltransferase cobK 1078489 - 1079256 + | cobalt-precorrin-6x reductase CLI_1040 1079336 - 1079824 + | hypothetical protein CLI_1041 1079847 - 1079966 + | hypothetical protein cbiK 1080137 - 1080919 + | anaerobic sirohydrochlorin cobaltochelatase TERM 1592 1081080 - 1081069 - g 89 -3 -6.20267 | opp_overlap 1081069, overlap 1081061 CGAAAAAGAAAAAAA TTTC TATA GAAA TATTAAAGCAAATAA TERM 1593 1081527 - 1081509 - g 74 -3.2 -5.43487 | AAAGTATAGAAAAAA GAAATATT AAA AATATATC ACGGATTTCAGAGGA CLI_1043 1080932 - 1081771 + | putative kinase cobO 1081921 - 1082442 + | cob(I)yrinic acid a,c-diamide adenosyltransferase CLI_1045 1082695 - 1083384 + | Crp/FNR family transcriptional regulator TERM 1594 1083377 - 1083398 + F 100 -10.3 -6.02914 | CAAAGTTTTTTAAGG GTATGTGAT TTTC ATCACATAC TTTTTTTTATATACA CLI_1046 1083474 - 1084238 + | formate/nitrite transporter family protein asrA 1084255 - 1085286 + | anaerobic sulfite reductase, subunit A TERM 1595 1085774 - 1085749 - g 77 -5.7 -4.93288 | gap 1, opp_overlap 1085755, overlap 1085752 1085761 AAGATGGAAAGAAAA CAT-TAATGTAA ATG TTACATTAGATG TAGCAGAAGAAGGCT TERM 1596 1086020 - 1086032 + G 70 -4.1 -4.96646 | overlap 1086021 GATACCTATATTTGC TTGGA AGG TCCAG TTTTTAATTATGTAA asrB 1085273 - 1086070 + | anaerobic sulfite reductase subunit B arsC 1086083 - 1087048 + | anaerobic sulfite reductase, subunit C TERM 1597 1087096 - 1087130 + F 100 -13.2 -5.46706 | opp_overlap 1087096 TAAATATAAAAAAAA GCAATGAATTTCAA TAGATGT TTGAAATTCATTGC TTTTTGTTTTGAAAT TERM 1598 1087130 - 1087096 - f 100 -13.2 -6.15717 | opp_overlap 1087096 TAAATATAAAAAAAA GCAATGAATTTCAA TAGATGT TTGAAATTCATTGC TTTTTGTTTTGAAAT TERM 1599 1087338 - 1087326 - f 70 -3.5 -5.27923 | overlap 1087314 GAATTTTACAAAAAA TTATA AAA TATAA ATACATTTACAGTAT CLI_1050 1087398 - 1088420 + | molybdopterin biosynthesis protein TERM 1600 1088486 - 1088443 - T 75 -9 -3.2029 | opp_overlap 1088442, overlap 1088446 1088449 AATTAATATATTTAA GAATAACTAGGTAACAGTGC TATT GCTGTAATACCTAGTTATTC GGATTTATTTATATC CLI_1051 1088913 - 1088566 - | hypothetical protein TERM 1601 1089318 - 1089276 - H 100 -19.5 -4.25104 | opp_overlap 1089276 TTGTTCTTATTAAAA GAGGGTGTCTCAAATAGAT ATTAA ATCTATTTGAGACATCCTC TTTTTTAGTTAAATC TERM 1602 1089276 - 1089318 + H 100 -21.7 -5.28481 | opp_overlap 1089276 TTGTTCTTATTAAAA GAGGGTGTCTCAAATAGAT ATTAA ATCTATTTGAGACATCCTC TTTTTTAGTTAAATC TERM 1603 1089774 - 1089762 - H 77 -3.5 -5.69068 | GAAAAAGATAAAAAA TTATA AAA TATAA TGAACTTAATAAATT CLI_1052 1089803 - 1090822 + | hypothetical protein CLI_1053 1090843 - 1091730 + | ABC transporter, ATP-binding protein TERM 1604 1092029 - 1092043 + G 70 -6.4 -4.15143 | opp_overlap 1092028 1092029 AAGCTAAAGCAATAG CAGCTG GAA TAGCTG TTTCTATAGTTAATT CLI_1054 1091734 - 1092510 + | hypothetical protein CLI_1055 1093159 - 1093881 + | DNA-binding response regulator CLI_1056 1093871 - 1095292 + | sensor histidine kinase TERM 1605 1095399 - 1095389 - f 81 -5.4 -5.38047 | TATTTAGAGAAAAAA GTAC AAA GTAC AGAGAACAGATAAGG CLI_1057 1095615 - 1095728 + | hypothetical protein CLI_1058 1096682 - 1095912 - | iron chelate ABC transporter ATP-binding protein CLI_1059 1097750 - 1096683 - | iron chelate ABC transporter permease protein TERM 1606 1097688 - 1097742 + g 100 -13.6 -3.91564 | gap 1, opp_overlap 1097700, overlap 1097696 1097700 AAACAGGGCTATAAT TAATATAATAAATTTTAAAGTGCAA TTATTT TTGCACTTTAAAATTTGTT-TATTA TTATTCATTCTTATC TERM 1607 1097696 - 1097735 + g 100 -13.3 -4.58786 | opp_overlap 1097700, overlap 1097688 1097700 CTATAATTAATATAA TAAATTTTAAAGTGCAA TTATTT TTGCACTTTAAAATTTG TTTATTATTATTCAT TERM 1608 1097700 - 1097731 + g 100 -11.9 -4.79953 | opp_overlap 1097700, overlap 1097696 1097688 AATTAATATAATAAA TTTTAAAGTGCAA TTATTT TTGCACTTTAAAA TTTGTTTATTATTAT TERM 1609 1097731 - 1097700 - G 100 -11.9 -4.48583 | opp_overlap 1097696 1097688 1097700 AATTAATATAATAAA TTTTAAAGTGCAA TTATTT TTGCACTTTAAAA TTTGTTTATTATTAT CLI_1060 1098785 - 1097763 - | putative iron chelate uptake ABC transporter, solute-binding protein TERM 1610 1098685 - 1098709 + g 70 -5 -4.63218 | GATTGTTCAGTTTTA GTACTGTCAC TACTT GTGCTAGTAC TTTTATTAGAGCAAC TERM 1611 1098931 - 1098960 + r 70 -7.3 -3.67134 | gap 1, opp_overlap 1098924 1098931 GATAAGAAGTATCAA CCCATTGCTTTATC ATA GA-AAAGCAATAGG TTATTAAAATAATTT TERM 1612 1098960 - 1098931 - R 82 -9.5 -3.34242 | gap 1, opp_overlap 1098931, overlap 1098924 GATAAGAAGTATCAA CCCATTGCTTTATC ATA GA-AAAGCAATAGG TTATTAAAATAATTT TERM 1613 1099285 - 1099256 - R 82 -5.8 -5.61881 | opp_overlap 1099256 1099258 GGGTAAAAATAAAAA CCCCAGTAAAAA ATAAGA TGTTTACTGGAG TTTTTAGGTTAAATT dhaKL 1101103 - 1099343 - | dihydroxyacetone kinase, subunit I/II dhaD 1102244 - 1101114 - | glycerol dehydrogenase TERM 1614 1102346 - 1102362 + r 86 -4.5 -5.95946 | opp_overlap 1102346 1102349, overlap 1102335 TCCATGACAAAAAAT TATGATT AAA AATCGTA TTTTTTTGTTGTTGA TERM 1615 1102530 - 1102502 - R 100 -9.2 -6.17669 | opp_overlap 1102502 AAGAAAATAAAAAAA GATTTAATTTTA ATATA TAAAATTAAATC TTTTTAGAGACAATG TERM 1616 1102502 - 1102530 + r 93 -9.2 -4.57073 | opp_overlap 1102502 AAGAAAATAAAAAAA GATTTAATTTTA ATATA TAAAATTAAATC TTTTTAGAGACAATG CLI_1063 1103598 - 1102561 - | AraC family transcriptional regulator TERM 1617 1103824 - 1103796 - H 75 -7.7 -3.99878 | opp_overlap 1103796 1103799 ATATATAATATTAAA TCATAACTCAAAA TGT TTTTAAGTTATAA TTTGCTCATTAAAAA TERM 1618 1103860 - 1103842 - H 73 -3.2 -5.52384 | TGCTCATTAAAAAAA TCTATATA CAT TATATTGA AATTAATATTTATAG CLI_1064 1103940 - 1104404 + | acetyltransferase CLI_1065 1104506 - 1104949 + | acetyltransferase CLI_1066 1105102 - 1105695 + | hypothetical protein CLI_1067 1105759 - 1105959 + | hypothetical protein CLI_1068 1106081 - 1106926 + | aldo/keto reductase family oxidoreductase CLI_1069 1107027 - 1107350 + | TfoX domain-containing protein CLI_1070 1107396 - 1108250 + | acetyltransferase CLI_1071 1108475 - 1108966 + | hypothetical protein TERM 1619 1109035 - 1109081 + T 93 -9.7 -4.60808 | opp_overlap 1109039 1109040, overlap 1109040 AACCGCATTTAATTC TAAAGCCTATCCTAAGCATTG CAATA TAAGGCTTAAGATAGGTTTTA TTTATGTTTTTCTGA TERM 1620 1109040 - 1109076 + T 87 -7.4 -5.15682 | opp_overlap 1109039 1109040, overlap 1109035 CATTTAATTCTAAAG CCTATCCTAAGCATTG CAATA TAAGGCTTAAGATAGG TTTTATTTATGTTTT TERM 1621 1109076 - 1109040 - T 73 -8.9 -2.79968 | opp_overlap 1109040 1109035, overlap 1109039 CATTTAATTCTAAAG CCTATCCTAAGCATT GCAATAT AAGGCTTAAGATAGG TTTTATTTATGTTTT TERM 1622 1109108 - 1109132 + T 93 -10.9 -3.33162 | opp_overlap 1109101 1109108 1109122 CTGAAAAATCATAAA TGGTTGGAAAA ATT TTTTTCAACCA TTGTAAAATCAAATG TERM 1623 1109132 - 1109108 - T 84 -8.7 -4.2687 | opp_overlap 1109108, overlap 1109101 1109122 CTGAAAAATCATAAA TGGTTGGAAAA ATT TTTTTCAACCA TTGTAAAATCAAATG TERM 1624 1109514 - 1109546 + T 71 -8.4 -3.0792 | ACAGGACGTTTACTT AGCTCTGTTGCCAC AGGAC GTGGCATTAGAGCG TTAGCTGAAATATTA add 1110655 - 1109648 - | adenosine deaminase TERM 1625 1110813 - 1110778 - H 93 -7.2 -5.79595 | opp_overlap 1110785 CTTCAAAATAAAAAA TATTTAATTTTATGCC TAAT AGTATAAAATTAAATA ACTCAGGTTTATAAG TERM 1626 1111433 - 1111398 - H 95 -10.9 -3.51837 | opp_overlap 1111397, overlap 1111396 ATATAAGGAAGAAGA TTATTTTAAGATTAA GATTAA TTAATCTTAAAATAA ATGTGTGAACAAACT CLI_1073 1111550 - 1113718 + | putative phage infection protein CLI_1074 1113745 - 1115904 + | putative phage infection protein TERM 1627 1116054 - 1116022 - T 72 -8.4 -3.20878 | TAATATTTAAGCTAA CGCTCTAATGCCAC GTCCT GTGGCAACAGAGCT AAGTAAACGTCCTGT TERM 1628 1116312 - 1116286 - T 95 -12.5 -3.60098 | opp_overlap 1116286 1116289 1116294, overlap 1116289 ACTCTGTACTCTAAA TAAGGAAAGTG TGTGG CACTTTCCTTA TAATATGTAAAAATA TERM 1629 1116286 - 1116312 + T 91 -13.2 -2.69468 | opp_overlap 1116286 1116289, overlap 1116289 1116294 ACTCTGTACTCTAAA TAAGGAAAGTGT GTG GCACTTTCCTTA TAATATGTAAAAATA TERM 1630 1116289 - 1116309 + T 91 -10.5 -3.49777 | opp_overlap 1116289 1116286, overlap 1116286 1116294 CTGTACTCTAAATAA GGAAAGTGT GTG GCACTTTCC TTATAATATGTAAAA TERM 1631 1116309 - 1116289 - T 93 -9.8 -3.9392 | opp_overlap 1116286 1116289 1116294, overlap 1116286 CTGTACTCTAAATAA GGAAAGTG TGTGG CACTTTCC TTATAATATGTAAAA CLI_1075 1116680 - 1116378 - | hypothetical protein TERM 1632 1117031 - 1117015 - g 91 -10.9 -3.79071 | opp_overlap 1117025 TTTATAAGATTTAAA CCTATGG CTA CCATAGG ACATGGATTAATAGG CLI_1076 1116886 - 1117641 + | hypothetical protein TERM 1633 1119237 - 1119225 - g 73 -3.5 -5.20216 | opp_overlap 1119225 TAGAGGATCAAAAAA TAAAA AGC TTTTA TCCTTAGATTTAGAT recQ 1117909 - 1120038 + | ATP-dependent DNA helicase RecQ TERM 1634 1120538 - 1120516 - g 82 -6.4 -5.31545 | AATAAGATGAAAAAA TCTTTAGC AGTAAAG GCTAAAGA AGAAAATATAGATGA CLI_1078 1120210 - 1120641 + | ferritin-like diiron domain-containing protein TERM 1635 1120865 - 1120826 - T 73 -8.8 -2.90615 | gap 1, opp_overlap 1120833 1120863, overlap 1120829 1120830 1120832 ATTTCTCCTAAAGGA TAAC-GACTTCTAAGGAGT AAA ACTCCTAAGAATTCTGTTA ATAAGCTTTAGTGGG TERM 1636 1120860 - 1120830 - T 79 -9.8 -2.75769 | opp_overlap 1120833, overlap 1120829 1120826 1120832 CTCCTAAAGGATAAC GACTTCTAAGGAGT AAA ACTCCTAAGAATTC TGTTAATAAGCTTTA TERM 1637 1120833 - 1120857 + T 90 -10.1 -3.71552 | opp_overlap 1120832 1120830 1120829 1120826 CTAAAGGATAACGAC TTCTAAGGAGT AAA ACTCCTAAGAA TTCTGTTAATAAGCT CLI_1079 1121468 - 1120923 - | phosphodiesterase TERM 1638 1122116 - 1122106 - g 79 -5.4 -5.26316 | GGAGGTTATAAAAAA TGAG TAG CTCA CAAAAGAATATATTA CLI_1080 1122105 - 1122488 + | response regulator TERM 1639 1122549 - 1122600 + F 81 -7.8 -4.4078 | gap 2, opp_overlap 1122549 1122551 1122567, overlap 1122551 TTAAGTAACCTATAA TA-TACACCTTTCAT-ATAATGCT GTTAAA AGCACTATAATGAAAGGTGTATTA TTTTGATTGAAAGAA TERM 1640 1122599 - 1122549 - f 95 -11.6 -3.45134 | gap 1, opp_overlap 1122549 1122551, overlap 1122551 1122567 TTAAGTAACCTATAA TATACACCTTTCAT-ATAATGCT GTTAAA AGCACTATAATGAAAGGTGTATT ATTTTGATTGAAAGA TERM 1641 1122551 - 1122597 + F 100 -12 -4.32402 | gap 1, opp_overlap 1122551 1122549 1122567, overlap 1122549 AAGTAACCTATAATA TACACCTTTCAT-ATAATGCT GTTAAA AGCACTATAATGAAAGGTGTA TTATTTTGATTGAAA TERM 1642 1122597 - 1122551 - f 100 -14.2 -3.29216 | gap 1, opp_overlap 1122549 1122551, overlap 1122549 1122567 AAGTAACCTATAATA TACACCTTTCAT-ATAATGCT GTTAAA AGCACTATAATGAAAGGTGTA TTATTTTGATTGAAA TERM 1643 1123300 - 1123281 - g 75 -7.2 -4.15664 | opp_overlap 1123281 AAATCTATAGATAAA GCTTTAGA GCTT CCTAAAGC TTATCCCTCTAAGAA CLI_1081 1122603 - 1125077 + | hypothetical protein TERM 1644 1125110 - 1125090 - f 78 -4.2 -5.51353 | TAAAAATAAGAAAAA TTTATTTT AGATA AAAATAAA AATAACTATAAAACA TERM 1645 1125183 - 1125218 + F 93 -7 -5.79595 | AGTGAAATAATAAAA GGTAGGATAGCATTTT ATTA GAAGTGCTGTTCTATC TTTTTTGTTTTAGAG CLI_1082 1125525 - 1125740 + | hypothetical protein CLI_1083 1125742 - 1126560 + | hypothetical protein CLI_1084 1126560 - 1127153 + | putative anaerobic ribonucleoside-triphosphate reductase activating protein CLI_1085 1127167 - 1128840 + | AAA family ATPase CLI_1086 1128855 - 1129625 + | hypothetical protein TERM 1646 1129689 - 1129713 + F 100 -6.6 -6.18768 | opp_overlap 1129689 TATTTTATAAAAAGA TATACGCAAA ATAAA TTTGTGTATA TTTTTTTTCTATTTT TERM 1647 1130262 - 1130275 + G 73 -8.1 -3.53012 | ATGCCAATTTTAGAT GCAGC TTCT GCTGC TTTAGAAGGAACGGC TERM 1648 1130930 - 1130914 - g 85 -5.9 -5.35222 | opp_overlap 1130914, overlap 1130916 AAAATGTAGAAAAAA TACCTTT TAA AAAGGCA GTTATAGCATGGTTA TERM 1649 1130928 - 1130916 - g 72 -6.3 -4.28383 | opp_overlap 1130914, overlap 1130914 AATGTAGAAAAAATA CCTTT TAA AAAGG CAGTTATAGCATGGT TERM 1650 1131234 - 1131214 - g 81 -8.3 -4.09963 | opp_overlap 1131211, overlap 1131216 CTGCAATAACAATAA TAGCCATAG TAG CTATGGCAA AGATTATGGGATATA TERM 1651 1131232 - 1131216 - g 90 -10.9 -3.63645 | opp_overlap 1131211, overlap 1131214 GCAATAACAATAATA GCCATAG TAG CTATGGC AAAGATTATGGGATA lctP 1130103 - 1131626 + | L-lactate permease TERM 1652 1132345 - 1132355 + G 72 -5.4 -4.69326 | opp_overlap 1132345, overlap 1132340 TATGCCGCTGAAAAA GCTA ATT TAGC TTTTATATTAAATGT TERM 1653 1132355 - 1132345 - g 70 -5.4 -4.57073 | opp_overlap 1132345 1132340 TATGCCGCTGAAAAA GCTA ATT TAGC TTTTATATTAAATGT TERM 1654 1132893 - 1132881 - g 74 -7.7 -3.78026 | GCTAAAGGGAAAAGA CGCTA AAG TAGCG GTAATACCTGATGGT CLI_1088 1131655 - 1132929 + | hypothetical protein CLI_1089 1132972 - 1133760 + | electron transfer flavoprotein, beta subunit/FixA family protein TERM 1655 1134323 - 1134309 - g 70 -8.6 -2.57252 | overlap 1134308 1134306 CAACAATAGGAAGAT CTCTTG CAC CAAGAG TAGCAGCTAGATTTA CLI_1090 1133792 - 1134994 + | electron transfer flavoprotein, alpha subunit/FixB family protein CLI_1091 1135055 - 1136452 + | putative glycolate oxidase TERM 1656 1136522 - 1136480 - f 77 -6.5 -4.70659 | opp_overlap 1136480 TTTTAGAGTGAAAAA TGGAGAAGCACATGAAT ATTTTTTTA ATTCATGTGTTTCTTCA TTTTTTATTTGCATG TERM 1657 1136480 - 1136522 + F 100 -10.9 -5.65927 | opp_overlap 1136480 TTTTAGAGTGAAAAA TGGAGAAGCACATGAAT ATTTTTTTA ATTCATGTGTTTCTTCA TTTTTTATTTGCATG CLI_1092 1136721 - 1136840 + | hypothetical protein TERM 1658 1136869 - 1136885 + F 73 -4.5 -5.1287 | opp_overlap 1136882 CAAACTATTTATATT TTTGTTT CGA AGACAAA TTTTTTGAGTATAGA CLI_1093 1136967 - 1137875 + | putative lipoprotein TERM 1659 1137892 - 1137917 + F 73 -3.3 -5.48063 | opp_overlap 1137892 ATTTATTTATAAAAA GCTATTTGAAT TATT ATTCTTATAGC TTTTTTCTATTACAT CLI_1094 1138071 - 1138541 + | MarR family transcriptional regulator CLI_1095 1138543 - 1139088 + | putative cyclase TERM 1660 1139169 - 1139217 + T 70 -4.2 -5.05079 | gap 1, opp_overlap 1139162 1139178, overlap 1139178 GATTTAAATTAATAA TATTAAAAACCGCTAATTAAATA TTAA TAGTTAATTAGCGG-TTGTACTA TTTTTATATAATTCT TERM 1661 1139209 - 1139178 - T 100 -11.8 -4.93316 | opp_overlap 1139169 1139178 TAATAATATTAAAAA CCGCTAATTAAATA TTAA TAGTTAATTAGCGG TTGTACTATTTTTAT TERM 1662 1139178 - 1139209 + T 95 -11.8 -3.65068 | opp_overlap 1139178, overlap 1139169 TAATAATATTAAAAA CCGCTAATTAAATA TTAA TAGTTAATTAGCGG TTGTACTATTTTTAT CLI_1096 1140423 - 1139239 - | aspartate aminotransferase TERM 1663 1140663 - 1140616 - R 100 -10.2 -4.45083 | opp_overlap 1140621 TTCATATTTATAAAA GCTCCGTCTATTTTAAATATAA ATTT TTATATTTAAAATAGACTTTGC TTTCATGTGTAGATA TERM 1664 1140621 - 1140658 + r 100 -16.1 -4.13341 | opp_overlap 1140616 ATTTATAAAAGCTCC GTCTATTTTAAATATAA ATTT TTATATTTAAAATAGAC TTTGCTTTCATGTGT TERM 1665 1140962 - 1140925 - R 74 -6 -4.56802 | opp_overlap 1140917, overlap 1140917 AAAGAAATATTAAAA TTATTTAATATTAATA TATGCG CACTAATATTAAATAA TGAAAGTGGTTTATT TERM 1666 1141104 - 1141142 + r 70 -4.3 -5.06816 | gap 1, opp_overlap 1141109, overlap 1141109 GGTGATTGCAATTAA AAAAATAAATATTCA-TA ATAT TATTGAATATTTATTTTA TTTTTGTTAAAAGAT TERM 1667 1141109 - 1141137 + r 76 -4.2 -5.42605 | gap 1, opp_overlap 1141109, overlap 1141104 TTGCAATTAAAAAAA TAAATATTCA-TA ATAT TATTGAATATTTA TTTTATTTTTGTTAA TERM 1668 1141137 - 1141109 - R 78 -4.2 -5.63103 | gap 1, opp_overlap 1141109 1141104 TTGCAATTAAAAAAA TAAATATTCA-TA ATAT TATTGAATATTTA TTTTATTTTTGTTAA TERM 1669 1141308 - 1141277 - R 75 -8.8 -3.28912 | opp_overlap 1141273 1141273, overlap 1141278 1141280 TTATATTTATATTAA TTAGGTAGCAAGCT ATTA AGTTTGCTACCTAG TCCAATTATGAATAA TERM 1670 1141307 - 1141278 - R 86 -12.3 -2.57026 | opp_overlap 1141273 1141273, overlap 1141277 1141280 TATATTTATATTAAT TAGGTAGCAAGCT ATTA AGTTTGCTACCTA GTCCAATTATGAATA TERM 1671 1141305 - 1141280 - R 82 -10.5 -2.82023 | opp_overlap 1141273 1141273, overlap 1141278 1141277 TATTTATATTAATTA GGTAGCAAGCT ATTA AGTTTGCTACC TAGTCCAATTATGAA CLI_1097 1141950 - 1141372 - | putative cyclase TERM 1672 1142310 - 1142278 - g 74 -6.5 -4.43909 | opp_overlap 1142280 AGCTTAACAAAATAA CAGATAATGATAT AAAGGGG ATATCTTTATCTG AATTCCACGTTATAG CLI_1098 1142109 - 1142633 + | MarR family transcriptional regulator CLI_1099 1142936 - 1143757 + | MerR family transcriptional regulator TERM 1673 1144219 - 1144207 - g 71 -5.5 -4.42851 | CTAATAAATTTAAAA GCTCC ATT GAAGC AATAACTACAAGAGT CLI_1100 1143972 - 1144670 + | B3/4 domain-containing protein TERM 1674 1144736 - 1144776 + T 100 -19.4 -3.07895 | opp_overlap 1144736 1144743, overlap 1144743 TGGATATAAGTACAA GCATAAAGAGATTAGGGT AGATA ATCCTAATCTCTTTATGC TATATTGGAGATGCA TERM 1675 1144776 - 1144736 - T 100 -17.2 -3.59023 | opp_overlap 1144736 1144743, overlap 1144743 TGGATATAAGTACAA GCATAAAGAGATTAGGGT AGATA ATCCTAATCTCTTTATGC TATATTGGAGATGCA TERM 1676 1144743 - 1144769 + T 95 -10.3 -4.06505 | opp_overlap 1144736 1144743, overlap 1144736 AAGTACAAGCATAAA GAGATTAGGGT AGATA ATCCTAATCTC TTTATGCTATATTGG TERM 1677 1144769 - 1144743 - T 79 -8.1 -4.11884 | opp_overlap 1144743 1144736, overlap 1144736 AAGTACAAGCATAAA GAGATTAGGGT AGATA ATCCTAATCTC TTTATGCTATATTGG aspS-1 1146235 - 1144946 - | aspartyl-tRNA synthetase TERM 1678 1146289 - 1146258 - H 95 -9.4 -4.87133 | opp_overlap 1146257, overlap 1146261 ACCTCCTAAATAAAA TAAGCCCCTTGAGT AAAA ACCCAAGGGGCAAA ATAATCTGCGGTACC TERM 1679 1146286 - 1146261 - H 100 -15.5 -4.54026 | opp_overlap 1146257, overlap 1146258 TCCTAAATAAAATAA GCCCCTTGAGT AAAA ACCCAAGGGGC AAAATAATCTGCGGT TERM 1680 1146379 - 1146430 + H 75 -8.8 -3.28924 | opp_overlap 1146380 1146383, overlap 1146380 1146382 AATTCCTATATAAAT AGAGTTCTTGGCTTTAGAGGTAGT TTTT ACTCCCTCTGAAGCTTAGAAATCG TTATCCAGGGACGTA TERM 1681 1146380 - 1146429 + H 86 -12.3 -2.57211 | opp_overlap 1146380 1146383, overlap 1146379 1146382 ATTCCTATATAAATA GAGTTCTTGGCTTTAGAGGTAGT TTTT ACTCCCTCTGAAGCTTAGAAATC GTTATCCAGGGACGT TERM 1682 1146429 - 1146380 - H 72 -7.9 -3.615 | opp_overlap 1146379 1146380 1146382, overlap 1146383 ATTCCTATATAAATA GAGTTCTTGGCTTTAGAGGTAGT TTTT ACTCCCTCTGAAGCTTAGAAATC GTTATCCAGGGACGT TERM 1683 1146382 - 1146427 + H 73 -9.1 -2.82623 | opp_overlap 1146380 1146383, overlap 1146380 1146379 TCCTATATAAATAGA GTTCTTGGCTTTAGAGGTAGT TTTT ACTCCCTCTGAAGCTTAGAAA TCGTTATCCAGGGAC TERM 1684 1146537 - 1146511 - H 100 -10.9 -5.4833 | opp_overlap 1146511, overlap 1146530 TCATCGAATAAAAAA GCCTTCACCCC ATATA GGAGTGAAAGC TTACATTCACGGTAC CLI_1102 1147444 - 1147944 + | putative transporter TERM 1685 1148068 - 1148048 - T 75 -6.9 -4.43879 | overlap 1148049 1148050 ATTACTTAAGTAAAA CCCCAAATC TTT GATTTGGAA AGTTGAACTTACTCA TERM 1686 1148067 - 1148049 - T 72 -8.2 -3.25604 | overlap 1148048 1148050 TTACTTAAGTAAAAC CCCAAATC TTT GATTTGGA AAGTTGAACTTACTC TERM 1687 1148066 - 1148050 - T 75 -9.5 -2.54881 | overlap 1148049 1148048 TACTTAAGTAAAACC CCAAATC TTT GATTTGG AAAGTTGAACTTACT CLI_1103 1148238 - 1148122 - | hypothetical protein TERM 1688 1148413 - 1148454 + H 100 -10.6 -5.04733 | gap 1, opp_overlap 1148420 1148437, overlap 1148417 GAATAAGGAAGTCTG TACAGAAGTAGAATCTTTA AATAA TAGAGATTCTACTTCT-TA TTTTGTTTATAATTA TERM 1689 1148417 - 1148451 + H 100 -13.9 -4.58946 | opp_overlap 1148420 1148437, overlap 1148413 AAGGAAGTCTGTACA GAAGTAGAATCTTTA AATAA TAGAGATTCTACTTC TTATTTTGTTTATAA TERM 1690 1148448 - 1148420 - H 72 -7.6 -3.494 | opp_overlap 1148417 1148413, overlap 1148437 GAAGTCTGTACAGAA GTAGAATCTTTA AATAA TAGAGATTCTAC TTCTTATTTTGTTTA TERM 1691 1149124 - 1149114 - g 82 -4 -5.61824 | CAAAATGGAAAAAAA TCTT AGA AAGA TAAAGGATACAGAAA CLI_1104 1148656 - 1149213 + | hypothetical protein TERM 1692 1149625 - 1149636 + G 83 -2.2 -5.86965 | TATTTTGGACGTGTT GCTG CAAT TAGC TTTTTTTTAATACCT CLI_1105 1149217 - 1149780 + | CDP-alcohol phosphatidyltransferase family protein CLI_1106 1149964 - 1150626 + | TetR family transcriptional regulator CLI_1107 1150642 - 1151130 + | hypothetical protein TERM 1693 1151231 - 1151182 - T 100 -12.5 -4.48869 | gap 1, opp_overlap 1151184, overlap 1151184 TAAAAATAATATAAA GATGGTGCTGTCTCAAAATA-GCT TTA ATCGTATTTTGAAACAGCACCATT AATCTATATCTATTT TERM 1694 1151184 - 1151229 + T 95 -12.9 -3.37057 | gap 1, opp_overlap 1151182 1151184 AAAATAATATAAAGA TGGTGCTGTCTCAAAATA-GCT TTA ATCGTATTTTGAAACAGCACCA TTAATCTATATCTAT TERM 1695 1151229 - 1151184 - T 100 -15.1 -3.80533 | gap 1, opp_overlap 1151184, overlap 1151182 AAAATAATATAAAGA TGGTGCTGTCTCAAAATA-GCT TTA ATCGTATTTTGAAACAGCACCA TTAATCTATATCTAT CLI_1108 1151930 - 1151241 - | HAD family hydrolase CLI_1109 1152243 - 1152932 + | cyclic nucleotide-binding domain-containing protein TERM 1696 1153042 - 1153023 - T 73 -6.6 -4.2416 | opp_overlap 1153023 1153021 TAATCCAATAAAGAA TTTCAATA ATAT TATTGAAA TATGTTATAAAATAA CLI_1110 1153826 - 1153242 - | DJ-1/PfpI family protein TERM 1697 1154156 - 1154145 - g 74 -3 -5.47218 | GTTTAGGTAAAAAAA TAGT TTTA ACTA ATGTAGGTCAAAAGT CLI_1111 1153982 - 1154875 + | LysR family transcriptional regulator CLI_1112 1154931 - 1155716 + | sigma-70 family RNA polymerase sigma factor CLI_1113 1155809 - 1156255 + | hypothetical protein TERM 1698 1156302 - 1156330 + F 100 -7.6 -6.4753 | opp_overlap 1156302 AAAAGATAGGAGAAA GTAGAATCTTTA AATAA TAGGGATTCTAC TTTTTTTTTATTTGC TERM 1699 1156349 - 1156368 + F 73 -5.8 -4.76963 | opp_overlap 1156351 TTTTTTATTTGCTAA TATGACAT AATG GTGTCATA TTTTATATTATATAA TERM 1700 1156833 - 1156847 + G 73 -5.7 -4.68545 | TAGCAGATACTTTAG GCTCA CAATA TGAGC TTTTATATCTTCCAT CLI_1114 1156412 - 1157170 + | hypothetical protein TERM 1701 1157183 - 1157214 + F 100 -17.4 -3.62522 | opp_overlap 1157176, overlap 1157184 TAAACAGAGTTCTTG GCTTCAGAGGGAGT TTTT ACTCCCACTGAAGC TTATTAACAGAATTC TERM 1702 1157219 - 1157258 + F 73 -8.8 -2.90615 | gap 1, opp_overlap 1157176 1157227, overlap 1157223 1157224 1157226 CCCACTGAAGCTTAT TAACAGAATTCTTAGGAGT TTT ACTCCTTAGAAGTC-GTTA TCCTTTAGGGGAAAT TERM 1703 1157224 - 1157254 + F 79 -9.8 -2.75769 | opp_overlap 1157227, overlap 1157223 1157219 1157226 TGAAGCTTATTAACA GAATTCTTAGGAGT TTT ACTCCTTAGAAGTC GTTATCCTTTAGGGG TERM 1704 1157251 - 1157227 - f 90 -10.1 -3.71552 | opp_overlap 1157226 1157224 1157223 1157219 AGCTTATTAACAGAA TTCTTAGGAGT TTT ACTCCTTAGAA GTCGTTATCCTTTAG TERM 1705 1157492 - 1157445 - f 78 -8 -4.2142 | opp_overlap 1157449, overlap 1157449 AAGATTTTAAAAGAA TGGAGGGTATCTCAAAATAA AATTAAAG CTATTTTGAGATACCCTTTA AGTACTAAAAAATAA TERM 1706 1157449 - 1157488 + F 95 -12.5 -3.68351 | opp_overlap 1157445 1157449 TTTTAAAAGAATGGA GGGTATCTCAAAATA AAATTAAAGC TATTTTGAGATACCC TTTAAGTACTAAAAA TERM 1707 1157488 - 1157449 - f 91 -13.2 -2.75865 | opp_overlap 1157449, overlap 1157445 TTTTAAAAGAATGGA GGGTATCTCAAAATAA AATTAAAG CTATTTTGAGATACCC TTTAAGTACTAAAAA CLI_1115 1157806 - 1158015 + | putative ferrous iron transport protein A CLI_1116 1158032 - 1158253 + | feoA family protein feoB-2 1158285 - 1160441 + | ferrous iron transport protein B TERM 1708 1160444 - 1160434 - f 71 -8.2 -3.00574 | overlap 1160431 GGACAGAAAATATTA GCGC ATA GCGC GTAAGGAGATAATAA CLI_1118 1160462 - 1160608 + | hypothetical protein TERM 1709 1160620 - 1160653 + F 100 -11.3 -5.70522 | opp_overlap 1160620 ATAAAAAATAAAAAA GAATCTATTTTCTAA ACAC TTGGGAAATAGATTC TTTTTTATTGTTCTT TERM 1710 1160653 - 1160620 - f 100 -6.9 -6.07374 | opp_overlap 1160620 ATAAAAAATAAAAAA GAATCTATTTTCTAA ACAC TTGGGAAATAGATTC TTTTTTATTGTTCTT TERM 1711 1161167 - 1161157 - g 82 -4 -5.55698 | TATAATTTAAAAAAA GTAA AGA TTAC TATAAATACCTTAAT CLI_1119 1160824 - 1161513 + | hypothetical protein CLI_1120 1162112 - 1161675 - | acetyltransferase TERM 1712 1162233 - 1162252 + H 70 -8 -3.31598 | opp_overlap 1162218 1162233, overlap 1162236 1162240 TTATTTTCAGAAAAA CAATTTGT ATTC ACAAATTG TTAATATACCTTTAT TERM 1713 1162252 - 1162233 - H 86 -8 -4.84359 | opp_overlap 1162233 1162236 1162240, overlap 1162218 TTATTTTCAGAAAAA CAATTTGT ATTC ACAAATTG TTAATATACCTTTAT CLI_1121 1162580 - 1163380 + | D-alanyl-D-alanine carboxypeptidase family protein tlp 1163678 - 1163905 + | small acid-soluble spore protein Tlp CLI_1123 1164123 - 1164001 - | hypothetical protein CLI_1124 1164715 - 1164092 - | TetR family transcriptional regulator TERM 1714 1164872 - 1164861 - H 70 -4.4 -5.02502 | TATACTAGATAAAAA TGAC CGTG GTCA TAAATATTTGTGATA CLI_1125 1164906 - 1166096 + | M24 family peptidase TERM 1715 1166390 - 1166369 - f 71 -5.3 -4.68655 | opp_overlap 1166369 1166366 1166389 TAATTTTAAAATAAA TAGTAAATC AATA AATTTACTA TTATTTTTAGATAAT TERM 1716 1166915 - 1166943 + G 79 -7.5 -4.36914 | opp_overlap 1166918 1166920, overlap 1166916 TGAGTTTGATATACT ATATACCCTTGTT TCA AACAAGGGTAAAG TTTTATCAAGAGAAC TERM 1717 1166916 - 1166942 + G 87 -11 -3.21934 | opp_overlap 1166918 1166920, overlap 1166915 GAGTTTGATATACTA TATACCCTTGTT TCA AACAAGGGTAAA GTTTTATCAAGAGAA TERM 1718 1166940 - 1166918 - g 100 -13.6 -2.88999 | opp_overlap 1166916 1166915, overlap 1166920 GTTTGATATACTATA TACCCTTGTT TCA AACAAGGGTA AAGTTTTATCAAGAG TERM 1719 1166938 - 1166920 - g 90 -11.8 -2.99545 | opp_overlap 1166916 1166915, overlap 1166918 TTGATATACTATATA CCCTTGTT TCA AACAAGGG TAAAGTTTTATCAAG CLI_1126 1166433 - 1167119 + | DNA-binding response regulator CLI_1127 1167120 - 1168475 + | sensor histidine kinase CLI_1128 1168579 - 1168713 + | hypothetical protein TERM 1720 1168816 - 1168804 - f 70 -6.3 -4.2717 | opp_overlap 1168802 1168804 ATTATTTTAGCAAAA TTCAC ACT GTGAA TAATTTTTTAGCATG TERM 1721 1169875 - 1169913 + G 100 -12.5 -4.68724 | opp_overlap 1169875 1169872 AGTTCGACGATACTA TCCTTTCGCTCCTTTTC TTGGT GCAAGGGTGCGAAAGGA TTTTATATTGAATGA TERM 1722 1169913 - 1169875 - g 78 -10.3 -2.66435 | opp_overlap 1169875, overlap 1169872 AGTTCGACGATACTA TCCTTTCGCTCCTTTTC TTGGT GCAAGGGTGCGAAAGGA TTTTATATTGAATGA CLI_1129 1169009 - 1170268 + | cytochrome P450 CLI_1130 1172216 - 1170408 - | heavy metal-binding domain-containing protein TERM 1723 1172012 - 1172025 + g 84 -6.7 -5.24531 | CATTAGAATTTTGTG TGCTG TATC CAGCA TTTTTTATAGCGGAT TERM 1724 1172364 - 1172346 - H 77 -7.6 -4.13995 | opp_overlap 1172346 TCTTTAGAAACTAAA CTTTTATT ACA AATAAAAG TATATAAAAAAGATA CLI_1131 1172643 - 1172951 + | hypothetical protein CLI_1132 1173362 - 1173598 + | hypothetical protein TERM 1725 1173617 - 1173640 + F 95 -10.4 -4.371 | opp_overlap 1173604 1173617 AATTATATACTTAAA TAGCTAGAGG TTAA TCTCTAGCTA TTTTGATATAATAAA TERM 1726 1173640 - 1173617 - f 84 -9.7 -3.75193 | opp_overlap 1173617, overlap 1173604 AATTATATACTTAAA TAGCTAGAG GTTAAT CTCTAGCTA TTTTGATATAATAAA TERM 1727 1173732 - 1173752 + F 70 -7.7 -3.32343 | opp_overlap 1173744 TAAATTGTGTGATAG TTCTTGTAC ATA GTATAAGAA TTCTGAAGCTCTGAA CLI_1133 1173868 - 1174569 + | DNA-binding response regulator TERM 1728 1175381 - 1175371 - g 70 -5.4 -4.63527 | TTACGACTTTAAAAA CTCA TGT TGAG GCAATAATAGATGGT CLI_1134 1174569 - 1175975 + | sensor histidine kinase TERM 1729 1176280 - 1176232 - T 75 -9.1 -3.22818 | opp_overlap 1176233, overlap 1176230 1176228 1176227 ATAAATAAAAGCATA TTTAAGAGGGAGTTTCAAAATTA GAT TTATTTTGAGACTTCCTCTTAAT TTTATGGTCTAGTTT TERM 1730 1176233 - 1176279 + T 100 -17 -4.5265 | opp_overlap 1176232 1176230 1176228 1176227 TAAATAAAAGCATAT TTAAGAGGGAGTTTCAAAATTA GAT TTATTTTGAGACTTCCTCTTAA TTTTATGGTCTAGTT CLI_1135 1177001 - 1176315 - | hypothetical protein CLI_1136 1177995 - 1177237 - | AraC family transcriptional regulator TERM 1731 1177417 - 1177436 + g 79 -5 -5.23943 | opp_overlap 1177417 1177416 AATTTCATTTACAAG CTGAGAAA AAGT TTTCCCAG TTTCTTTTTTTAATA CLI_1137 1178241 - 1179194 + | iron chelate ABC transporter permease protein CLI_1138 1179184 - 1180134 + | iron chelate ABC transporter permease protein CLI_1139 1180131 - 1180886 + | iron chelate ABC transporter ATP-binding protein CLI_1140 1180960 - 1181904 + | iron chelate ABC transporter solute-binding protein CLI_1141 1182106 - 1183107 + | AraC family transcriptional regulator TERM 1732 1183120 - 1183148 + GF 93 -5.5 -5.71712 | gap 1, opp_overlap 1183131 TAAATTATTAAATTT TACTGC-ATACA TGCTAT TGTATTGCAGTA TTTTTTTGTGTGAAA CLI_1142 1183079 - 1183225 + | hypothetical protein TERM 1733 1183256 - 1183212 - f 75 -8.1 -3.59109 | opp_overlap 1183213 1183215 1183217, overlap 1183217 GTAGAGATGAGATAA GTGAAGCCCTATAATTGAT AATGGGA ATCAATTATAGGGCTCTAT TTTTTTATAAATTAT TERM 1734 1183213 - 1183255 + F 100 -11.6 -5.66684 | opp_overlap 1183212 1183217, overlap 1183215 1183217 TAGAGATGAGATAAG TGAAGCCCTATAATTGAT AATGGGA ATCAATTATAGGGCTCTA TTTTTTTATAAATTA TERM 1735 1183215 - 1183253 + F 100 -12 -4.46105 | opp_overlap 1183212 1183217, overlap 1183213 1183217 GAGATGAGATAAGTG AAGCCCTATAATTGAT AATGGGA ATCAATTATAGGGCTC TATTTTTTTATAAAT TERM 1736 1183251 - 1183217 - f 100 -14.6 -3.27164 | opp_overlap 1183217 1183215 1183213, overlap 1183212 GATGAGATAAGTGAA GCCCTATAATTGAT AATGGGA ATCAATTATAGGGC TCTATTTTTTTATAA TERM 1737 1183217 - 1183251 + F 100 -14.6 -3.81806 | opp_overlap 1183212 1183217, overlap 1183215 1183213 GATGAGATAAGTGAA GCCCTATAATTGAT AATGGGA ATCAATTATAGGGC TCTATTTTTTTATAA CLI_1143 1183620 - 1185422 + | ABC transporter ATP-binding/permease protein TERM 1738 1185928 - 1185946 + G 80 -8.9 -3.8512 | CTTTCTATGTTTGCT GCAATGC CAGTA GCATTGC TTATTATCATAGGTA CLI_1144 1185424 - 1187139 + | ABC transport ATP-binding/permease protein TERM 1739 1187251 - 1187200 - T 82 -8.5 -4.39828 | gap 1, opp_overlap 1187200 1187205, overlap 1187205 AATAGTGCTATAAAA TAAAAGTCCATTGAAAGAC-AAAC GTTAA ATTTAGTCTTTTAATGAACTTTTA TTTTTTATGTAGCTT TERM 1740 1187200 - 1187251 + T 100 -8.4 -5.38951 | opp_overlap 1187200 1187205, overlap 1187205 AATAGTGCTATAAAA TAAAAGTCCATTGAAAGACAAA CGTTAAAT TTAGTCTTTTAATGAACTTTTA TTTTTTATGTAGCTT TERM 1741 1187205 - 1187246 + T 75 -3.9 -5.51612 | opp_overlap 1187200 1187205, overlap 1187200 TGCTATAAAATAAAA GTCCATTGAAAGACAAA CGTTAAAT TTAGTCTTTTAATGAAC TTTTATTTTTTATGT TERM 1742 1187246 - 1187205 - T 70 -4 -5.18371 | gap 1, opp_overlap 1187205 1187200, overlap 1187200 TGCTATAAAATAAAA GTCCATTGAAAGAC-AAAC GTTAA ATTTAGTCTTTTAATGAAC TTTTATTTTTTATGT CLI_1145 1188719 - 1187346 - | sensor histidine kinase TERM 1743 1187467 - 1187488 + g 70 -3.8 -5.08255 | overlap 1187478 1187480 ATACCATGGTTATTT TTATCAGT TTTTGT GCTGATAA TTTTATTTTCGGCAT CLI_1146 1189429 - 1188722 - | DNA-binding response regulator CLI_1147 1190386 - 1189517 - | hypothetical protein TERM 1744 1193364 - 1193343 - g 70 -8.9 -2.52464 | opp_overlap 1193336 TGTTGTTTTAACGGA TGTTATTTC ACTT GAAATAACA GGAGCAGAATTCTCA TERM 1745 1193574 - 1193556 - g 85 -10.4 -3.69283 | opp_overlap 1193553 TAATCCAGGCAATAA CACATCTA CAG TAGATGTG GAAGTTATCCCGGTT TERM 1746 1193955 - 1193937 - g 95 -10.4 -4.1235 | opp_overlap 1193934 TAATCCAAACAATAA CACATCTA CAG TAGATGTG AAAGTTATCCCGGTT CLI_1148 1190998 - 1194429 + | hypothetical protein TERM 1747 1194451 - 1194493 + F 86 -11.5 -2.74598 | gap 1, opp_overlap 1194451, overlap 1194448 TTAATATAAAATAAA GGGACTGCCTCACAATGTAT AAAA ATACAATGTGA-GAAGTCCC TCATCTGCTTTATAG TERM 1748 1194493 - 1194451 - f 100 -13.7 -4.88163 | gap 1, opp_overlap 1194451 1194448 TTAATATAAAATAAA GGGACTGCCTCACAATGTAT AAAA ATACAATGTGAGA-AGTCCC TCATCTGCTTTATAG CLI_1149 1194617 - 1196116 + | extracellular exochitinase TERM 1749 1196194 - 1196180 - f 75 -8.6 -3.62572 | opp_overlap 1196182 1196183 1196186, overlap 1196178 1196185 1196186 ATTTAACTATAAATA GAGAAG GGC CTTCTC ATAATGAATTTTATG TERM 1750 1196186 - 1196224 + F 76 -8.2 -3.75911 | opp_overlap 1196180 1196178 1196185 1196186, overlap 1196183 1196182 CTATAAATAGAGAAG GGCCTTCTCATAATGAAT TTT ATGCATTATGGGACGCCC TCTTATTTGTTTAAA CLI_1150 1196442 - 1198484 + | hypothetical protein TERM 1751 1198644 - 1198683 + F 85 -10.9 -2.76492 | opp_overlap 1198640 1198645 1198647 1198650, overlap 1198643 AATATAAAATATTTA ATATAAGCCTTCGCTAT AATTTA ATAGCGAAGGCTTAAAA ATTTAAGATAACTAA TERM 1752 1198682 - 1198645 - f 100 -14.4 -3.31575 | opp_overlap 1198644 1198643, overlap 1198640 1198647 1198650 ATATAAAATATTTAA TATAAGCCTTCGCTAT AATTTA ATAGCGAAGGCTTAAA AATTTAAGATAACTA TERM 1753 1198680 - 1198647 - f 100 -17 -3.2099 | opp_overlap 1198644 1198643, overlap 1198645 1198640 1198650 ATAAAATATTTAATA TAAGCCTTCGCTAT AATTTA ATAGCGAAGGCTTA AAAATTTAAGATAAC TERM 1754 1198677 - 1198650 - f 100 -14.3 -3.7212 | opp_overlap 1198644 1198643, overlap 1198647 1198645 1198640 AAATATTTAATATAA GCCTTCGCTAT AATTTA ATAGCGAAGGC TTAAAAATTTAAGAT TERM 1755 1198696 - 1198709 + F 70 -2.5 -5.48054 | opp_overlap 1198696, overlap 1198696 AAAATTTAAGATAAC TAATA AAAT TATTA TTTTTTAATTTTAAT TERM 1756 1198861 - 1198838 - g 80 -6.1 -4.9181 | overlap 1198840 ATAGAACATTAAAAA CAGCAATTG GAGCTA CAATTGCTA TGAGTATTGCAGGCG TERM 1757 1198859 - 1198840 - g 70 -6.5 -4.06487 | overlap 1198838 AGAACATTAAAAACA GCAATTG GAGCTA CAATTGC TATGAGTATTGCAGG TERM 1758 1199581 - 1199569 - g 72 -7.7 -3.56036 | overlap 1199567 TTTACAAAAAAAGTA GCAGA CTC TCTGC ATGAAGAAAATACGG CLI_1151 1198807 - 1199802 + | hypothetical protein TERM 1759 1199912 - 1199877 - f 70 -7.7 -3.39439 | opp_overlap 1199878, overlap 1199870 1199875 1199873 1199878 1199880 ATAAATAATAACACA GTAGTGCTAAAGGTC AAATAG GAACTTTAGCACTAT TTTATATTATACTCA TERM 1760 1199911 - 1199878 - f 83 -11.2 -2.62037 | opp_overlap 1199878, overlap 1199870 1199877 1199875 1199873 1199880 TAAATAATAACACAG TAGTGCTAAAGGTC AAATAG GAACTTTAGCACTA TTTTATATTATACTC TERM 1761 1199878 - 1199911 + F 100 -11.2 -4.75289 | opp_overlap 1199870 1199878 1199877 1199875 1199873 1199880 TAAATAATAACACAG TAGTGCTAAAGGTC AAATAG GAACTTTAGCACTA TTTTATATTATACTC TERM 1762 1199909 - 1199880 - f 76 -9.4 -2.82897 | opp_overlap 1199878, overlap 1199870 1199878 1199877 1199875 1199873 AATAATAACACAGTA GTGCTAAAGGTC AAATAG GAACTTTAGCAC TATTTTATATTATAC CLI_1152 1199967 - 1200551 + | hypothetical protein CLI_1153 1201506 - 1200805 - | CAAX amino terminal protease family protein TERM 1763 1201297 - 1201276 - G 89 -6.7 -5.42131 | opp_overlap 1201276 1201279, overlap 1201269 CAATGACATAAAAAA GCTTTGTTT TTTA AAACAAAAC AATTTTTTTAAGGAT TERM 1764 1201279 - 1201299 + g 78 -4.1 -5.42259 | opp_overlap 1201269 1201276, overlap 1201276 TGACATAAAAAAGCT TTGTTTTTT AAA ACAAAACAA TTTTTTTAAGGATAA CLI_1154 1202428 - 1201622 - | metallo-beta-lactamase family protein CLI_1155 1204834 - 1202915 - | transporter TERM 1765 1203135 - 1203151 + g 71 -4.5 -4.71222 | TTTTCGTATTCAAGT TTTTCTT TAT AAGAGAA TTTTAATTTTGATGT TERM 1766 1203299 - 1203315 + g 70 -5.1 -4.65747 | overlap 1203300 AGAAATTTTTCCGTT ACCTTCA AAG TGAAGGA TTTTATTACAGATTC TERM 1767 1203300 - 1203314 + g 76 -8.6 -3.38725 | overlap 1203299 GAAATTTTTCCGTTA CCTTCA AAG TGAAGG ATTTTATTACAGATT TERM 1768 1203770 - 1203757 - G 74 -6.7 -4.32048 | opp_overlap 1203756 TAATAATATTTAAAA GGGTA GACT TACCC ATTCCATTGTTTCCC TERM 1769 1203829 - 1203840 + g 74 -3 -5.4756 | AAATGTAATTAAAGT CTTT TATT AAAG TTTTTTCTTCAAATT CLI_1156 1205472 - 1206686 + | hypothetical protein TERM 1770 1206710 - 1206743 + F 100 -13.5 -5.06414 | opp_overlap 1206710 TAGAAGATGTAAAAA TAGAGATATGGAATT TTAA AATTCTATATCTCTA TTTTTATTGAAAAGC TERM 1771 1206743 - 1206710 - f 100 -11.3 -4.76312 | opp_overlap 1206710 TAGAAGATGTAAAAA TAGAGATATGGAATT TTAA AATTCTATATCTCTA TTTTTATTGAAAAGC TERM 1772 1207106 - 1207090 - g 74 -2.3 -5.52384 | overlap 1207092 TTTGGAGTAAAAAAA TGTTTTG ATA CAAAAAA AGCTGAGAGATATTT CLI_1157 1207060 - 1207410 + | ArsC family protein CLI_1158 1207642 - 1208535 + | radical SAM domain-containing protein TERM 1773 1208719 - 1208663 - f 82 -9.8 -3.0094 | gap 1, opp_overlap 1208667 TTTTAGGCAGAGATA TTGAGAGCCTTAATTTAAAACGGG-AT TATT ATACCCATTTTAAATTAAGGCTCTTTT GATTTATAAGGAGGA TERM 1774 1208667 - 1208715 + F 100 -17.2 -4.61873 | gap 1, opp_overlap 1208663 AGGCAGAGATATTGA GAGCCTTAATTTAAAACGGG-AT TATT ATACCCATTTTAAATTAAGGCTC TTTTGATTTATAAGG CLI_1159 1208744 - 1210162 + | FAD-dependent oxidoreductase CLI_1160 1210219 - 1211475 + | pyridine nucleotide-disulphide oxidoreductase CLI_1161 1211478 - 1211846 + | hypothetical protein TERM 1775 1211897 - 1211843 - f 100 -18.4 -4.58395 | opp_overlap 1211848 1211857, overlap 1211850 TCTAGGTTGTAAAAA TTAAATATCAATAAGGATAGCTAATA TAA TATTAGCTATCCTTATTGACGGTTAA TAAATATTGACAATA TERM 1776 1211848 - 1211892 + F 100 -18.3 -2.52987 | opp_overlap 1211843 1211850, overlap 1211857 GTTGTAAAAATTAAA TATCAATAAGGATAGCTAATA TAA TATTAGCTATCCTTATTGACG GTTAATAAATATTGA TERM 1777 1211890 - 1211850 - f 100 -23.1 -3.7557 | opp_overlap 1211848 1211857, overlap 1211843 TGTAAAAATTAAATA TCAATAAGGATAGCTAATA TAA TATTAGCTATCCTTATTGA CGGTTAATAAATATT TERM 1778 1211857 - 1211883 + F 100 -15.4 -3.65581 | opp_overlap 1211850 1211843, overlap 1211848 ATTAAATATCAATAA GGATAGCTAATA TAA TATTAGCTATCC TTATTGACGGTTAAT TERM 1779 1212682 - 1212656 - g 72 -6.9 -4.11623 | opp_overlap 1212655 1212674 TATCAGGAAAGGAAA TATTATTTAAA TATGT TTTAAATAATA AATATTTATGGTATA TERM 1780 1213073 - 1213057 - g 70 -3.5 -5.02074 | TTAGTTCCTAAAAAA GCAGCAG GTA CAGCAGC AGGTTTTACAGGTTT glpT 1211935 - 1213272 + | glycerol-3-phosphate transporter TERM 1781 1213682 - 1213657 - f 95 -11.9 -3.30124 | opp_overlap 1213650 1213649 1213658, overlap 1213658 TGGTACCGCGGATAA TCCGTCTCTGT TTTT ACAGAGACGGT TTTTTTTATATATAA TERM 1782 1213681 - 1213658 - f 100 -15.4 -2.57931 | opp_overlap 1213650 1213649 1213658, overlap 1213657 GGTACCGCGGATAAT CCGTCTCTGT TTTT ACAGAGACGG TTTTTTTTATATATA TERM 1783 1213658 - 1213681 + F 100 -15.4 -6.06529 | opp_overlap 1213657 1213658, overlap 1213650 1213649 GGTACCGCGGATAAT CCGTCTCTGT TTTT ACAGAGACGG TTTTTTTTATATATA argS 1213855 - 1215546 + | arginyl-tRNA synthetase TERM 1784 1215799 - 1215817 + F 70 -2.5 -5.5762 | CTACTAAAGCTTATT TATATGT TTATT ACATGTA TTTTTTATCTTTGCT TERM 1785 1215930 - 1215901 - f 74 -8.1 -3.35996 | opp_overlap 1215901, overlap 1215900 TTGGATATACAAAAT TGCTTTATTTATT AAAT AATAAATAAGGCA TTTCAAGTAATTTTA TERM 1786 1215901 - 1215930 + F 91 -10.3 -3.66424 | opp_overlap 1215901 1215900 TTGGATATACAAAAT TGCTTTATTTATT AAAT AATAAATAAGGCA TTTCAAGTAATTTTA CLI_1164 1216087 - 1216200 + | hypothetical protein CLI_1165 1216190 - 1217320 + | transaminase CLI_1166 1217600 - 1217980 + | CBS domain-containing protein TERM 1787 1218021 - 1218063 + T 79 -5.1 -5.61913 | opp_overlap 1218019 1218021 GCTAGGATAAAAATA CACTTAATGAACTAATT CATTTTGCT AAGAAGTTCATTAAGTG TTTTTTATCTTTGTT CLI_1167 1218347 - 1218189 - | hypothetical protein feoB-3 1220136 - 1218373 - | ferrous iron transport protein B TERM 1788 1218585 - 1218561 - G 73 -8.8 -3.18506 | overlap 1218560 ATAATGGAGTAAAAT GATTTAAAAG AGTAA CTTTTAAATC TCCACCATATATAAC TERM 1789 1219290 - 1219280 - G 70 -4 -4.89966 | ATACCCAAAAACAAA GTAA GTA TTAC AGGTAGAAATACTAT feoA-2 1220372 - 1220151 - | ferrous ion transport protein A TERM 1790 1220227 - 1220245 + g 93 -5.9 -5.76949 | overlap 1220244 AAATTTATTAGTATG GGGTCTC CTAAA GGGGCCC TTTTTTTTAAGGATA CLI_1170 1220698 - 1221093 + | hypothetical protein TERM 1791 1221185 - 1221217 + F 95 -13 -3.49102 | opp_overlap 1221185 1221190, overlap 1221190 ATAAGTTAATTAAAA TAAAAGAAAAAGGG TTAAC CCCTTTTTCTTTTG TTATATAAAGCATAT TERM 1792 1221217 - 1221185 - f 100 -10.8 -4.46267 | opp_overlap 1221185 1221190, overlap 1221190 ATAAGTTAATTAAAA TAAAAGAAAAAGGG TTAAC CCCTTTTTCTTTTG TTATATAAAGCATAT TERM 1793 1221190 - 1221212 + F 100 -10.7 -4.84311 | opp_overlap 1221185 1221190, overlap 1221185 TTAATTAAAATAAAA GAAAAAGGG TTAAC CCCTTTTTC TTTTGTTATATAAAG TERM 1794 1221212 - 1221190 - f 100 -10.7 -5.18643 | opp_overlap 1221190 1221185, overlap 1221185 TTAATTAAAATAAAA GAAAAAGGG TTAAC CCCTTTTTC TTTTGTTATATAAAG CLI_1171 1221306 - 1222031 + | haloacid dehalogenase, IB family protein TERM 1795 1222106 - 1222141 + F 100 -7.8 -5.59564 | overlap 1222108 AGTTTTATATATTTG GAGGGATTAGTTAATT TTAA AATTGACTAATCTCTA TTTTTTTAGATTTAT TERM 1796 1222108 - 1222139 + F 100 -10.4 -4.41528 | overlap 1222106 TTTTATATATTTGGA GGGATTAGTTAATT TTAA AATTGACTAATCTC TATTTTTTTAGATTT TERM 1797 1222925 - 1222915 - f 73 -2.6 -5.79588 | GCAAAATCAAAAAAA TATT AAT AATA TGGGGGTAGATACAA TERM 1798 1223433 - 1223421 - g 71 -4.9 -4.84914 | opp_overlap 1223421 ATGCATATAAGAAAA TAATC AAA GATTA TGGATTAACTCATGT TERM 1799 1223825 - 1223805 - g 72 -6.9 -4.18763 | opp_overlap 1223804, overlap 1223808 AAGAAATTTGGAAAA TGATAGGAG TAA CTCCTATGA ATGGTTTAGATTATA TERM 1800 1223822 - 1223808 - g 73 -8.6 -3.1012 | opp_overlap 1223804, overlap 1223805 AAATTTGGAAAATGA TAGGAG TAA CTCCTA TGAATGGTTTAGATT CLI_1172 1222940 - 1224523 + | putative glycosyl hydrolase TERM 1801 1224565 - 1224602 + F 100 -11.5 -4.65263 | opp_overlap 1224565 ATAAATTTTTCAAGA GTATTGGGTTAGAGGTA TATT TCTCTCTAATCCAATAC TTTATTTTAACCAAT TERM 1802 1224781 - 1224766 - f 70 -6.2 -4.19621 | opp_overlap 1224765 1224768 TATAATATAAAAAGA GATAAG ATTA CTTATC AATTTTGGAGGGAAT CLI_1173 1224935 - 1225402 + | acetyltransferase TERM 1803 1225589 - 1225614 + F 100 -9.1 -6.17669 | opp_overlap 1225592, overlap 1225592 AAAATTTCGCTTATT AAAGCTAGAGA TTTT TCTCTAGCTTA TTTTTTTATTTTATT TERM 1804 1225592 - 1225611 + F 100 -10.8 -5.04908 | opp_overlap 1225592, overlap 1225589 ATTTCGCTTATTAAA GCTAGAGA TTTT TCTCTAGC TTATTTTTTTATTTT TERM 1805 1225611 - 1225592 - f 91 -10.8 -3.72695 | opp_overlap 1225592 1225589 ATTTCGCTTATTAAA GCTAGAGA TTTT TCTCTAGC TTATTTTTTTATTTT TERM 1806 1225968 - 1225954 - g 75 -5.8 -4.77157 | TTAACTTATTAAAAA GAAAAA ATG TTTTTC AAAATATTGCATTAC CLI_1174 1225680 - 1226636 + | methionine ABC transporter ATP-binding protein CLI_1175 1226638 - 1227279 + | methionine ABC transporter permease CLI_1176 1227334 - 1228146 + | NLPA family lipoprotein TERM 1807 1229120 - 1229102 - g 86 -2.5 -6.08342 | GAAGAAATAAAAAAA TATATCG AAGAA CAATATA AAGGAGCTATACTTC CLI_1177 1228334 - 1229146 + | NLPA family lipoprotein CLI_1178 1229374 - 1230540 + | amidohydrolase family protein TERM 1808 1230660 - 1230682 + F 78 -8 -4.32651 | opp_overlap 1230659 1230660, overlap 1230666 1230667 1230670 AATAATCATTAAGAG TTTTTAATTT TGA AAATTAAAAA TTTTCATAACTTCTT TERM 1809 1231056 - 1231100 + F 90 -11.7 -3.08133 | gap 2, opp_overlap 1231067 TTATCCGATGACTAC CCGCTCTAATACTCCCATCTT CTTCA AAG-TGGGAGTAA-AGAGCGG TTACGTCCCTGGATA CLI_1179 1231241 - 1231870 + | hypothetical protein TERM 1810 1231859 - 1231904 + F 100 -17.5 -3.73509 | gap 1, opp_overlap 1231859, overlap 1231867 ACAACCTGGAACAAA TTTATAAACTAAGGAAAGTGTA GAT TA-ACTTTCCTTAGTTTATAAA TTTAGAATTTGATAT TERM 1811 1231904 - 1231859 - f 100 -17.5 -4.18702 | gap 1, opp_overlap 1231859 1231867 ACAACCTGGAACAAA TTTATAAACTAAGGAAAGTGTA GAT TA-ACTTTCCTTAGTTTATAAA TTTAGAATTTGATAT TERM 1812 1231867 - 1231896 + F 95 -10.3 -4.02132 | gap 1, opp_overlap 1231859, overlap 1231859 GAACAAATTTATAAA CTAAGGAAAGTGTA GAT TA-ACTTTCCTTAG TTTATAAATTTAGAA TERM 1813 1232946 - 1232936 - g 70 -4 -4.86773 | TAAAATTATGAAAAA TGTT GAA AACA AAAAAGAACTAGTAG CLI_1180 1232376 - 1233068 + | GntR family transcriptional regulator TERM 1814 1233159 - 1233129 - f 78 -5.7 -5.10163 | opp_overlap 1233112 1233098 1233136 AAGTTTAAAATAAAA TTAATATTAACTT TTTAT AAGTTATTATTAA TATGGGTTAATTAAG CLI_1181 1233313 - 1234176 + | hypothetical protein CLI_1182 1234384 - 1234596 + | hypothetical protein TERM 1815 1234679 - 1234663 - T 73 -5.3 -4.75063 | opp_overlap 1234663 1234666 ACAAAATTTCAAAAA TAATATT CTT AATATTA TATAGTATTTCAAAT TERM 1816 1234770 - 1234739 - T 100 -11.8 -6.60239 | opp_overlap 1234744 1234760 AAAAATAAAAAAAAA TAAAATCTCAGCTA TAAT TAGCTGAGATTTTT CTTAGTGTATATTTA TERM 1817 1234744 - 1234765 + T 100 -11.7 -5.17744 | opp_overlap 1234739, overlap 1234760 TAAAAAAAAATAAAA TCTCAGCTA TAAT TAGCTGAGA TTTTTCTTAGTGTAT gltX 1236271 - 1234814 - | glutamyl-tRNA synthetase TERM 1818 1235783 - 1235795 + g 89 -4.1 -5.84432 | ATGGAAAGAAGTTGA TCCAG TAG TTGGA TTTTTTTGTCTTATA TERM 1819 1236332 - 1236310 - H 91 -8.5 -5.0065 | TATTTATAAATAAAA CCTTTCATC ACTTG GACGAAAGG TAAAAATTCATTTTA TERM 1820 1237063 - 1237053 - g 72 -4 -5.08824 | GCTGGAGCTAAAAAA GTTA TAA TAAC AGCACCAGGCAAAAA TERM 1821 1237579 - 1237605 + G 75 -7.4 -4.07568 | opp_overlap 1237575, overlap 1237575 GAGATCCAAGATCCT CTATAGTGGATG GAT TATCTACTATGG TTTTAGAAGACGACA gap-2 1236696 - 1237712 + | glyceraldehyde-3-phosphate dehydrogenase, type I TERM 1822 1237901 - 1237858 - T 100 -9.8 -4.53703 | opp_overlap 1237858 AAAATAAGATTAAAA GAGACTATCTCAGAACAAAT TTAA ATCTATTTTGAGACAGCCTC TTTCTTTTTAATATA CLI_1185 1239465 - 1237957 - | metallo-beta-lactamase family protein TERM 1823 1239743 - 1239787 + H 93 -11.7 -3.16475 | gap 2, opp_overlap 1239754 1239782 TTGTCCGATGGCTAC CCGCTCTAATACTCCCATCTT CTTCA AAG-TGGGAGTAA-AGAGCGG TTACGTCTCTGGATA TERM 1824 1239855 - 1239804 - H 93 -12.4 -3.28924 | opp_overlap 1239804 1239805 1239808, overlap 1239805 1239807 TACGTCTCTGGATAA CGATTTCTAAGCTTTAGTGGGAGT AAAA ACTCCCTCTAAAGCCAAGAACTCT GTTTATAAAATATTG TERM 1825 1239804 - 1239856 + H 93 -10 -3.93004 | gap 1, opp_overlap 1239804 1239805 1239807, overlap 1239805 1239808 TACGTCTCTGGATAA C-GATTTCTAAGCTTTAGTGGGAGT AAAA ACTCCCTCTAAAGCCAAGAACTCTG TTTATAAAATATTGT TERM 1826 1239805 - 1239854 + H 100 -13.7 -3.54848 | opp_overlap 1239804 1239805 1239807, overlap 1239804 1239808 ACGTCTCTGGATAAC GATTTCTAAGCTTTAGTGGGAGT AAAA ACTCCCTCTAAAGCCAAGAACTC TGTTTATAAAATATT TERM 1827 1239854 - 1239805 - H 100 -15.9 -2.57211 | opp_overlap 1239805 1239804 1239808, overlap 1239804 1239807 ACGTCTCTGGATAAC GATTTCTAAGCTTTAGTGGGAGT AAAA ACTCCCTCTAAAGCCAAGAACTC TGTTTATAAAATATT TERM 1828 1239852 - 1239807 - H 91 -12.7 -2.82623 | opp_overlap 1239805 1239804 1239808, overlap 1239805 1239804 GTCTCTGGATAACGA TTTCTAAGCTTTAGTGGGAGT AAAA ACTCCCTCTAAAGCCAAGAAC TCTGTTTATAAAATA TERM 1829 1239808 - 1239851 + H 100 -14 -2.60065 | opp_overlap 1239807 1239805 1239804, overlap 1239805 1239804 TCTCTGGATAACGAT TTCTAAGCTTTAGTGGGAGT AAAA ACTCCCTCTAAAGCCAAGAA CTCTGTTTATAAAAT CLI_1186 1239961 - 1240110 + | hypothetical protein CLI_1187 1240253 - 1240897 + | HD domain-containing protein CLI_1188 1240953 - 1242323 + | aldehyde dehydrogenase family protein TERM 1830 1242393 - 1242352 - T 100 -11.9 -4.9072 | opp_overlap 1242353 1242358 1242365, overlap 1242354 1242358 1242365 ATAAATAAAAAAGAA TATAAATAAAAAAGTCAGG ATTT CCTGACTTTTTTATTTAGT GTATATTACAAATTA TERM 1831 1242353 - 1242392 + T 100 -15.4 -3.10017 | opp_overlap 1242352 1242354 1242358 1242365, overlap 1242358 1242365 TAAATAAAAAAGAAT ATAAATAAAAAAGTCAGG ATTT CCTGACTTTTTTATTTAG TGTATATTACAAATT TERM 1832 1242391 - 1242354 - T 100 -18.9 -4.02034 | opp_overlap 1242353 1242358 1242365, overlap 1242352 1242358 1242365 AAATAAAAAAGAATA TAAATAAAAAAGTCAGG ATTT CCTGACTTTTTTATTTA GTGTATATTACAAAT TERM 1833 1242358 - 1242387 + T 100 -15.3 -3.93383 | opp_overlap 1242354 1242352 1242358 1242365, overlap 1242353 1242365 AAAAAAGAATATAAA TAAAAAAGTCAGG ATTT CCTGACTTTTTTA TTTAGTGTATATTAC TERM 1834 1242387 - 1242358 - T 100 -15.3 -4.50902 | opp_overlap 1242358 1242353 1242365, overlap 1242354 1242352 1242365 AAAAAAGAATATAAA TAAAAAAGTCAGG ATTT CCTGACTTTTTTA TTTAGTGTATATTAC TERM 1835 1242380 - 1242365 - T 100 -9 -5.7827 | opp_overlap 1242358 1242353 1242365, overlap 1242358 1242354 1242352 AATATAAATAAAAAA GTCAGG ATTT CCTGAC TTTTTTATTTAGTGT TERM 1836 1242365 - 1242380 + T 100 -9 -5.69793 | opp_overlap 1242365 1242358 1242354 1242352, overlap 1242358 1242353 AATATAAATAAAAAA GTCAGG ATTT CCTGAC TTTTTTATTTAGTGT CLI_1189 1243803 - 1242406 - | sodium:alanine symporter family protein TERM 1837 1242707 - 1242693 - G 79 -5.8 -5.14563 | opp_overlap 1242693 TTTCGCAGTAAAAAA CTATAA CTA TTATAG TTGATAAAACAAATA TERM 1838 1242815 - 1242801 - G 70 -8.6 -2.71119 | overlap 1242800 ATGCAGGCATAGAAG CTGCTT GAG AAGCAG GGAGTTTTTCCCATA TERM 1839 1244292 - 1244326 + r 76 -8.1 -3.71284 | gap 1, opp_overlap 1244293 1244303, overlap 1244293 1244296 1244303 TGAATTGGAAAACAT ACATAAAAAAACTCCC CAGA GGGAG-TTTTTTATGA TTGTATTGATGACCC TERM 1840 1244325 - 1244293 - R 95 -11.6 -3.42437 | gap 1, opp_overlap 1244293 1244292 1244296 1244303, overlap 1244303 GAATTGGAAAACATA CATAAAAAAACTCCC CAGA GGGAG-TTTTTTATG ATTGTATTGATGACC TERM 1841 1244293 - 1244325 + r 88 -11.6 -2.82449 | gap 1, opp_overlap 1244293 1244303, overlap 1244292 1244296 1244303 GAATTGGAAAACATA CATAAAAAAACTCCC CAGA GGGAG-TTTTTTATG ATTGTATTGATGACC TERM 1842 1244296 - 1244323 + r 82 -10 -2.95751 | opp_overlap 1244293 1244303, overlap 1244293 1244292 1244303 TTGGAAAACATACAT AAAAAAACTCCC CAGA GGGAGTTTTTTA TGATTGTATTGATGA TERM 1843 1244316 - 1244303 - R 100 -8.1 -5.77988 | opp_overlap 1244303 1244296 1244293 1244292, overlap 1244293 ACATACATAAAAAAA CTCCC CAGA GGGAG TTTTTTATGATTGTA TERM 1844 1244303 - 1244316 + r 100 -8.1 -5.39755 | opp_overlap 1244293 1244303, overlap 1244296 1244293 1244292 ACATACATAAAAAAA CTCCC CAGA GGGAG TTTTTTATGATTGTA TERM 1845 1244336 - 1244368 + r 95 -11.5 -3.65314 | gap 1, overlap 1244337 TTATGATTGTATTGA T-GACCCCCTTATG TAAATT CATAAGGGGGTCTA TTATTAAAGATTAGA TERM 1846 1244337 - 1244366 + r 100 -16.6 -3.40498 | overlap 1244336 TATGATTGTATTGAT GACCCCCTTATG TAAATT CATAAGGGGGTC TATTATTAAAGATTA CLI_1190 1245776 - 1244400 - | sodium:alanine symporter family protein TERM 1847 1246135 - 1246190 + H 100 -14.6 -2.67803 | gap 1, opp_overlap 1246138, overlap 1246138 AGGAAAATATTTGAA TAATAGTTGCAAGTACAAC-TAATTTG TGA TATATTAAGTTGTATTTGCAACTATTA TAAATTTAATGGAGG TERM 1848 1246138 - 1246187 + H 95 -11.9 -3.48807 | gap 1, opp_overlap 1246138, overlap 1246135 AAAATATTTGAATAA TAGTTGCAAGTACAAC-TAATTTG TGA TATATTAAGTTGTATTTGCAACTA TTATAAATTTAATGG TERM 1849 1246187 - 1246138 - H 79 -9 -3.69976 | gap 1, opp_overlap 1246138 1246135 AAAATATTTGAATAA TAGTTGCAAGTACAAC-TAATTT GTGAT ATATTAAGTTGTATTTGCAACTA TTATAAATTTAATGG CLI_1191 1246215 - 1246652 + | MarR family transcriptional regulator CLI_1192 1246670 - 1248037 + | MATE efflux family protein TERM 1850 1248096 - 1248129 + F 88 -8.4 -4.88388 | opp_overlap 1248096 GAACTTATAATTAAA GCTTAGAGATAATT TTGATT AGTTATTTCTAAGC TTTTTATAAGGTTCT TERM 1851 1248218 - 1248208 - f 70 -2.6 -5.49234 | ATATGGAACAAAAAA TATA GCG TATA ATATAGGTTTTATAA CLI_1193 1248456 - 1249001 + | TPR domain-containing protein TERM 1852 1249021 - 1248983 - f 78 -8.6 -3.95893 | opp_overlap 1248983 1248990, overlap 1248978 1248990 AAAAGACATATTAAA TAAAAAATATTTTAATTA ATG TAAATAAAATATTTTCTA AAGGATAAGAATAAT TERM 1853 1249014 - 1248990 - f 82 -4.5 -5.69793 | opp_overlap 1248983 1248990, overlap 1248978 1248983 ATATTAAATAAAAAA TATTTTAATTA ATG TAAATAAAATA TTTTCTAAAGGATAA TERM 1854 1249070 - 1249039 - f 95 -10.4 -4.13244 | opp_overlap 1249040 1249045, overlap 1249040 1249045 GGATAAGAATAATAA GTAAAAGCTATGAT AGAA ATCATAGCTTTTAT AAATTTACGTTAAAT TERM 1855 1249069 - 1249040 - f 100 -13.9 -3.06862 | opp_overlap 1249040 1249045, overlap 1249039 1249045 GATAAGAATAATAAG TAAAAGCTATGAT AGAA ATCATAGCTTTTA TAAATTTACGTTAAA TERM 1856 1249040 - 1249069 + F 100 -13.9 -2.68071 | opp_overlap 1249040 1249039 1249045, overlap 1249045 GATAAGAATAATAAG TAAAAGCTATGAT AGAA ATCATAGCTTTTA TAAATTTACGTTAAA TERM 1857 1249064 - 1249045 - f 93 -9.4 -4.61824 | opp_overlap 1249040 1249045, overlap 1249040 1249039 GAATAATAAGTAAAA GCTATGAT AGAA ATCATAGC TTTTATAAATTTACG TERM 1858 1249045 - 1249064 + F 93 -9.4 -4.51196 | opp_overlap 1249045 1249040 1249039, overlap 1249040 GAATAATAAGTAAAA GCTATGAT AGAA ATCATAGC TTTTATAAATTTACG TERM 1859 1249701 - 1249679 - g 72 -8 -3.58511 | opp_overlap 1249679 AAGGAAAGAGTAGAA TTTTTATATA ATT TATATAAAAA TTTTTATGAATTTAA TERM 1860 1249679 - 1249701 + G 88 -8 -4.94992 | opp_overlap 1249679 AAGGAAAGAGTAGAA TTTTTATATA ATT TATATAAAAA TTTTTATGAATTTAA TERM 1861 1249947 - 1249937 - g 70 -5.4 -4.52747 | CAAAATACAAAAGAA GGTA ATT TACC TGTAGAGAAGATAAC CLI_1194 1249100 - 1250077 + | hypothetical protein TERM 1862 1250276 - 1250330 + F 82 -9 -4.08216 | opp_overlap 1250281 1250282, overlap 1250286 TAAAAGTAAATAGAT TAAAAGTAAATAGCTGATTTAAATTA TTG TAATTTAAATCAGCTATTTAAGTAGA TTTTAAAAGAAATGA TERM 1863 1250325 - 1250281 - f 100 -17.7 -4.46493 | opp_overlap 1250276 1250286, overlap 1250282 GTAAATAGATTAAAA GTAAATAGCTGATTTAAATTA TTG TAATTTAAATCAGCTATTTAA GTAGATTTTAAAAGA TERM 1864 1250324 - 1250282 - f 100 -21.2 -3.26811 | opp_overlap 1250276 1250286, overlap 1250281 TAAATAGATTAAAAG TAAATAGCTGATTTAAATTA TTG TAATTTAAATCAGCTATTTA AGTAGATTTTAAAAG TERM 1865 1250286 - 1250320 + F 100 -17.6 -3.71148 | opp_overlap 1250282 1250281, overlap 1250276 TAGATTAAAAGTAAA TAGCTGATTTAAATTA TTG TAATTTAAATCAGCTA TTTAAGTAGATTTTA TERM 1866 1251258 - 1251239 - g 74 -5 -4.98061 | ACATATTAAATAAAA TGCTTGGT GAAA AGCAAGCA GGGAGTGATAAAGGA TERM 1867 1251733 - 1251709 - g 75 -4.4 -5.26247 | overlap 1251710 1251711 TTAAAAGAAATAAAA CCTTACCTTT GGAAT AAAGGTAAAA CTTATCCTGCTAATA CLI_1195 1250959 - 1252197 + | hypothetical protein TERM 1868 1252284 - 1252303 + G 76 -8.6 -3.41073 | opp_overlap 1252282 1252284, overlap 1252282 TAGGAATAATAAATT GCCTAAGT CAAA GCTTAGGC TATTTCCCTACAGTG CLI_1196 1252199 - 1253062 + | ABC transporter, permease protein CLI_1197 1253088 - 1253894 + | ABC transporter, permease protein CLI_1198 1253906 - 1254925 + | ABC transporter, ATP-binding protein CLI_1199 1255227 - 1256186 + | hypothetical protein CLI_1200 1256290 - 1256841 + | acetyltransferase CLI_1201 1256851 - 1257186 + | hypothetical protein TERM 1869 1257240 - 1257256 + F 80 -6.5 -4.9792 | opp_overlap 1257240 1257238 1257241, overlap 1257240 ATTTATTTTGAAATA TCCCCTT TTA GGGGGGA TTTTTATGTGGGCTA TERM 1870 1257253 - 1257241 - f 72 -9.1 -2.61695 | opp_overlap 1257240 1257240, overlap 1257240 1257238 TTTATTTTGAAATAT CCCCT TTT AGGGG GGATTTTTATGTGGG CLI_1202 1257262 - 1257540 + | hypothetical protein CLI_1203 1257541 - 1258137 + | hypothetical protein maa 1258426 - 1258980 + | maltose transacetylase birA 1260250 - 1259267 - | birA bifunctional protein TERM 1871 1259376 - 1259388 + g 70 -6.3 -4.16259 | opp_overlap 1259374 GAGTTTAAACCTACA GCTTT TCC AAAGC TTTCTCTAGTTCTGT TERM 1872 1259782 - 1259769 - G 71 -6.7 -3.97042 | opp_overlap 1259781, overlap 1259781 TTATTATTAAGTAAA GCTGT TAAT ACAGC AGCAGCGGCTATTTG CLI_1206 1260414 - 1260617 + | putative heavy metal-binding protein CLI_1207 1260894 - 1261331 + | CBS domain-containing protein TERM 1873 1261312 - 1261351 + F 100 -13.1 -4.68593 | opp_overlap 1261317 1261319, overlap 1261317 1261319 AAAAAGATATTATAA TAAAAGAGGGCAAGAGT TAAAAT ACTCTTGCCCTTCTTTA TTTTTAGATAATAAA TERM 1874 1261346 - 1261317 - f 100 -10.8 -4.82819 | opp_overlap 1261312 1261317 1261319, overlap 1261319 GATATTATAATAAAA GAGGGCAAGAGT TAAAAT ACTCTTGCCCTT CTTTATTTTTAGATA TERM 1875 1261317 - 1261347 + F 100 -10.6 -4.89063 | gap 1, opp_overlap 1261317 1261319, overlap 1261312 1261319 GATATTATAATAAAA G-AGGGCAAGAGT TAAAAT ACTCTTGCCCTTC TTTATTTTTAGATAA TERM 1876 1261344 - 1261319 - f 100 -13.4 -4.02119 | opp_overlap 1261317 1261312 1261319, overlap 1261317 TATTATAATAAAAGA GGGCAAGAGT TAAAAT ACTCTTGCCC TTCTTTATTTTTAGA TERM 1877 1261319 - 1261344 + F 100 -13.4 -4.52502 | opp_overlap 1261319 1261317, overlap 1261317 1261312 TATTATAATAAAAGA GGGCAAGAGT TAAAAT ACTCTTGCCC TTCTTTATTTTTAGA TERM 1878 1261614 - 1261624 + G 78 -4 -5.36364 | opp_overlap 1261614 AGTTATGTTAAATCA GATT TAA AATC TTTTTGTATTTTTAA TERM 1879 1262836 - 1262806 - g 74 -8.4 -3.65314 | overlap 1262797 AAGGCACAGAGATAA TCTTTGAACTTCCT TCT AGGAAGGTTAAAGA AAATGAGAAATGTAA CLI_1208 1261491 - 1262924 + | sensor histidine kinase TERM 1880 1262959 - 1262999 + T 78 -6.3 -4.92791 | opp_overlap 1262960 1262963, overlap 1262960 1262963 TGTTTTTAGTGATAA AGAGGGCGTTTCAAAAT TAAATAT ATTTTGAAACACCTTCC TTTTATTATCTTATC TERM 1881 1262998 - 1262960 - T 93 -9.8 -3.91897 | opp_overlap 1262959 1262960 1262963, overlap 1262963 GTTTTTAGTGATAAA GAGGGCGTTTCAAAAT TAAATAT ATTTTGAAACACCTTC CTTTTATTATCTTAT TERM 1882 1262960 - 1262998 + T 89 -9.8 -3.54048 | opp_overlap 1262960 1262963, overlap 1262959 1262963 GTTTTTAGTGATAAA GAGGGCGTTTCAAAAT TAAATAT ATTTTGAAACACCTTC CTTTTATTATCTTAT TERM 1883 1262995 - 1262963 - T 79 -10.1 -2.72745 | opp_overlap 1262960 1262959 1262963, overlap 1262960 TTTAGTGATAAAGAG GGCGTTTCAAAAT TAAATAT ATTTTGAAACACC TTCCTTTTATTATCT TERM 1884 1262963 - 1262995 + T 75 -7.9 -3.86445 | opp_overlap 1262963 1262960, overlap 1262960 1262959 TTTAGTGATAAAGAG GGCGTTTCAAAAT TAAATAT ATTTTGAAACACC TTCCTTTTATTATCT CLI_1209 1263161 - 1263036 - | hypothetical protein TERM 1885 1263583 - 1263526 - H 100 -16.9 -4.33675 | opp_overlap 1263529 1263531, overlap 1263531 1263533 ATTATACCATTAAAA CAAAATCTGTCTCCAAATAAAATAAAT TTAA AATTATTTTATTTGGAGACAAATCTTA TTGAATGTTAAAAGA TERM 1886 1263529 - 1263580 + H 95 -12 -3.7347 | opp_overlap 1263526 1263531 1263533, overlap 1263531 ATACCATTAAAACAA AATCTGTCTCCAAATAAAATAAAT TTAA AATTATTTTATTTGGAGACAAATC TTATTGAATGTTAAA TERM 1887 1263578 - 1263531 - H 100 -16.8 -5.14626 | opp_overlap 1263529 1263531, overlap 1263526 1263533 ACCATTAAAACAAAA TCTGTCTCCAAATAAAATAAAT TTAA AATTATTTTATTTGGAGACAAA TCTTATTGAATGTTA TERM 1888 1263531 - 1263578 + H 100 -14.6 -3.44517 | opp_overlap 1263531 1263526 1263533, overlap 1263529 ACCATTAAAACAAAA TCTGTCTCCAAATAAAATAAAT TTAA AATTATTTTATTTGGAGACAAA TCTTATTGAATGTTA TERM 1889 1263576 - 1263533 - H 100 -17.2 -2.79205 | opp_overlap 1263531 1263529, overlap 1263531 1263526 CATTAAAACAAAATC TGTCTCCAAATAAAATAAAT TTAA AATTATTTTATTTGGAGACA AATCTTATTGAATGT CLI_1210 1263790 - 1264569 + | hypothetical protein TERM 1890 1264597 - 1264629 + F 88 -5 -5.93252 | opp_overlap 1264595 1264597 TTAGGTTTAAGAAGA GTTGCTAATGAT TATTAAAGT ATCTTTAGCAAC TTTTTTATTTTTACA mgtE 1265070 - 1266404 + | magnesium transporter TERM 1891 1266466 - 1266508 + F 100 -25.4 -3.81473 | opp_overlap 1266466, overlap 1266460 1266469 AATAATTAGAAAAAA TAAGCATAGGTATGTTTAAG GAA CTTAAACATACCTATGCTTA TTTAAATATATTTTT TERM 1892 1266508 - 1266466 - f 100 -25.4 -5.4111 | opp_overlap 1266466 1266460 1266469 AATAATTAGAAAAAA TAAGCATAGGTATGTTTAAG GAA CTTAAACATACCTATGCTTA TTTAAATATATTTTT TERM 1893 1266469 - 1266505 + F 100 -22.7 -4.00587 | opp_overlap 1266466, overlap 1266466 1266460 AATTAGAAAAAATAA GCATAGGTATGTTTAAG GAA CTTAAACATACCTATGC TTATTTAAATATATT TERM 1894 1267015 - 1267048 + F 100 -12.5 -5.0916 | opp_overlap 1267022 TAAGGGTGGCAACGC GAGTCAATCGTCCCT ACCA AGGGATGGTGGACTC TTTTTGTATTACCAA TERM 1895 1267838 - 1267809 - g 74 -7.3 -4.01939 | gap 1 TAACTCATAATGAAA CTTCTACAGGTATT ATG AAT-CCAGTAGAAG AAATAAGTAAAGTCA CLI_1212 1267406 - 1268479 + | aminotransferase, class V serA 1268704 - 1269648 + | D-3-phosphoglycerate dehydrogenase TERM 1896 1270467 - 1270457 - g 72 -2.6 -5.35365 | AAAATAGAAGAAAAA TTTA TAG TAAA AGAATATGAGGTTAA CLI_1214 1269626 - 1270954 + | hypothetical protein TERM 1897 1272420 - 1272395 - g 75 -4.9 -5.06816 | ATGTTGCAATAAAAA TTTATAATTCT TCAA AGAATGATAAA AACGATATTATAACA CLI_1215 1271542 - 1272732 + | hypothetical protein TERM 1898 1274731 - 1274749 + G 82 -7.6 -4.46212 | overlap 1274746 ATGTAGTAATAATTG TTTACTTA CTG TAAGTAAA TTTTCTGATGGCAGA TERM 1899 1274746 - 1274771 + G 79 -8.5 -3.99592 | opp_overlap 1274750 1274751, overlap 1274731 1274750 TTTACTTACTGTAAG TAAATTTTCTG ATGG CAGAAAGTTTA TTTCTGGTAATAGAT CLI_1216 1272890 - 1277179 + | putative CoA-substrate-specific enzyme activase TERM 1900 1277200 - 1277252 + T 95 -11.8 -3.61591 | gap 1, opp_overlap 1277205 1277226, overlap 1277205 TTTGAAATAAGTAAA TTAA-ATATTAAGGGAGGATACT AAAATAAG AGAATCCTCCCTTAATATATTAA TTATATAACTTTTTC TERM 1901 1277205 - 1277246 + T 100 -13.3 -3.32023 | opp_overlap 1277205 1277226, overlap 1277200 AATAAGTAAATTAAA TATTAAGGGAGGATACT AAAATAAG AGAATCCTCCCTTAATA TATTAATTATATAAC TERM 1902 1277246 - 1277205 - T 100 -13.3 -4.17109 | opp_overlap 1277200 1277205, overlap 1277226 AATAAGTAAATTAAA TATTAAGGGAGGATACT AAAATAAG AGAATCCTCCCTTAATA TATTAATTATATAAC CLI_1217 1278767 - 1277253 - | choline/carnitine/betaine transporter TERM 1903 1277633 - 1277623 - G 80 -6.8 -4.79953 | opp_overlap 1277621 1277623 ATAACAACAAAGAAA GCTG TTT CAGC TCTTTTAATTGCAGT CLI_1218 1279126 - 1279752 + | GntR family transcriptional regulator CLI_1219 1279863 - 1280363 + | hypothetical protein TERM 1904 1280396 - 1280424 + F 100 -9 -5.08086 | GTATTATTTTTTTAG GCTGTTGATAAA CATAT TTTGTCAACGGC TTTTGTATTTTTTAT CLI_1220 1280662 - 1281222 + | putative pyrazinamidase/nicotinamidase CLI_1221 1281380 - 1281691 + | putative phage shock protein CLI_1222 1281767 - 1282231 + | hypothetical protein CLI_1223 1282508 - 1282708 + | hypothetical protein TERM 1905 1282728 - 1282718 - f 73 -2.6 -5.80951 | opp_overlap 1282718 ATTTAAAATAAAAAA TTAA ATT TTAA TAGCTTCTTTCTTAG CLI_1224 1282885 - 1283796 + | TPR repeat-containing protein xpt-2 1283957 - 1284529 + | xanthine phosphoribosyltransferase TERM 1906 1284738 - 1284699 - f 100 -11.2 -5.13344 | opp_overlap 1284699 1284705, overlap 1284726 ATAGTAAGATAAAAA TTTAAAGTTATAGTTATT ATTA AATAATTATAACTTTAAA TTATAACTGGAAATT TERM 1907 1284699 - 1284738 + F 100 -13.4 -3.36175 | opp_overlap 1284699 1284726, overlap 1284705 ATAGTAAGATAAAAA TTTAAAGTTATAGTTATT ATTA AATAATTATAACTTTAAA TTATAACTGGAAATT TERM 1908 1284705 - 1284732 + F 73 -8 -3.81339 | opp_overlap 1284699 1284726, overlap 1284699 AGATAAAAATTTAAA GTTATAGTTATT ATTA AATAATTATAAC TTTAAATTATAACTG CLI_1226 1284827 - 1285408 + | hypothetical protein TERM 1909 1285513 - 1285472 - f 70 -7.8 -3.39488 | opp_overlap 1285483, overlap 1285475 TAAATAGAAAGCTAA TAGTTTTATAATATTAAA AACAAG TTTAATATTATAAAAGTA ACATTATGGATTTCA TERM 1910 1285510 - 1285475 - f 75 -9.5 -2.53748 | opp_overlap 1285483, overlap 1285472 ATAGAAAGCTAATAG TTTTATAATATTAAA AACAAG TTTAATATTATAAAA GTAACATTATGGATT TERM 1911 1285597 - 1285626 + F 100 -9.6 -5.79595 | opp_overlap 1285595 1285603 1285624, overlap 1285587 TCGATCTATAAATTT TAATTATAGTTG ATAATC CAACTATAATTA TTTTTTATTTTAAAA TERM 1912 1286648 - 1286628 - g 70 -3.9 -5.02606 | CATCAAATAAGAAAA CTCCAGTAG ATT CTTTTGGAG CAGCGGTACCTCTAA CLI_1227 1285718 - 1287100 + | putative thiosulfate sulfurtransferase TERM 1913 1287318 - 1287353 + G 72 -6.6 -4.12942 | gap 1, opp_overlap 1287313 1287328, overlap 1287313 1287334 GAACGCATAATATTT TAAATATAATTTTGAGT ATA ATTC-AAATTATATTTA TTTTACCAGCTTTAA CLI_1228 1287296 - 1287718 + | hypothetical protein CLI_1229 1288062 - 1289165 + | putative transporter TERM 1914 1289210 - 1289245 + F 76 -2 -5.8187 | AAAGTTAATAAAAAA TATATCCTAGGAAATA TAAT TAATTTATGGGATATA TTTTTTTATTCACTA CLI_1230 1289345 - 1289674 + | MazG family protein TERM 1915 1289703 - 1289682 - f 78 -6.1 -5.03201 | overlap 1289676 AAGAATAATTAAAAA TTTTATAAA GTTT TTTATAAAA TGAATAATAAATACT CLI_1231 1289811 - 1291550 + | hypothetical protein TERM 1916 1291601 - 1291583 - T 78 -4.6 -5.56264 | opp_overlap 1291583 CCTAAAGATAAAAAA CATTAATG AAC CATTCATG TTTTTAGCAAGTTTT CLI_1232 1291856 - 1291689 - | hypothetical protein CLI_1233 1292132 - 1292272 + | hypothetical protein TERM 1917 1292281 - 1292318 + F 90 -6.6 -5.64321 | opp_overlap 1292281 GCTTTAAAATAAAAA TAAACATTCATAAC TAAATATGAT GTTGTGAATGTTTA TTTTTATTTTATTAT TERM 1918 1292318 - 1292281 - f 78 -4.4 -5.45802 | opp_overlap 1292281 GCTTTAAAATAAAAA TAAACATTCATAAC TAAATATGAT GTTGTGAATGTTTA TTTTTATTTTATTAT TERM 1919 1292561 - 1292541 - g 72 -6.3 -4.34993 | opp_overlap 1292557, overlap 1292532 GAAATATTAAAACAA TTTAAATCT GGA AGATCTAAA GCCTTAGTGTTTTTA TERM 1920 1293169 - 1293144 - g 72 -8.5 -3.3363 | opp_overlap 1293144 1293151, overlap 1293151 GTAATAATAACGGAA GAAAAACCTAT TATA ATAGATTTTTC TGATTTGCTTAAGGA CLI_1234 1292454 - 1293653 + | hypothetical protein TERM 1921 1293770 - 1293794 + F 100 -7.9 -5.73339 | opp_overlap 1293763 TAAATTTATAAAAAA GATTGTTGCAC CTT GTGTAGCAGTC TTTTTTTCTACTTAT CLI_1235 1294045 - 1295091 + | ABC transporter, substrate-binding protein TERM 1922 1295110 - 1295137 + GF 73 -5.6 -4.60713 | opp_overlap 1295108 1295112, overlap 1295111 1295112 GAACAGGAAAAAATT AAGGGTATCTAA TAAA TTAGATACCCAA TTTTATAATATTTTA TERM 1923 1295111 - 1295136 + GF 78 -9.1 -3.34801 | opp_overlap 1295108 1295112, overlap 1295110 1295112 AACAGGAAAAAATTA AGGGTATCTAA TAAA TTAGATACCCA ATTTTATAATATTTT TERM 1924 1295135 - 1295112 - gf 100 -12.6 -3.9735 | opp_overlap 1295111 1295110 1295112, overlap 1295108 ACAGGAAAAAATTAA GGGTATCTAA TAAA TTAGATACCC AATTTTATAATATTT TERM 1925 1295112 - 1295135 + GF 100 -12.6 -2.59254 | opp_overlap 1295112 1295108, overlap 1295111 1295110 ACAGGAAAAAATTAA GGGTATCTAA TAAA TTAGATACCC AATTTTATAATATTT TERM 1926 1295162 - 1295186 + GF 74 -8.1 -3.36868 | opp_overlap 1295160, overlap 1295160 1295159 1295169 ATTTTAGATAAGATT CTAATAGTATT TAT AATATTATTAG TACTTTTATTTATAT CLI_1236 1295093 - 1296781 + | ABC transporter, permease protein CLI_1237 1296744 - 1297679 + | ABC transporter, ATP-binding protein TERM 1927 1297725 - 1297683 - T 83 -7.3 -4.98531 | gap 1, opp_overlap 1297683 TTTTTAAATTAAAAA GGATTTATTGCTAAGAAATA TTTT TA-TACTTAGCAGTAAATCC TTTGTTCTTATGTGA TERM 1928 1297683 - 1297725 + T 93 -9.5 -4.55093 | gap 1, opp_overlap 1297683 TTTTTAAATTAAAAA GGATTTATTGCTAAGAAATA TTTT TA-TACTTAGCAGTAAATCC TTTGTTCTTATGTGA CLI_1238 1298538 - 1297744 - | hypothetical protein TERM 1929 1300004 - 1299979 - g 70 -6.3 -4.18668 | opp_overlap 1299978, overlap 1299982 CTAAAAAATATTAAA TTATTACTAGA GCTG TCTAGTAAAAA ATAATATAAGGATTA CLI_1239 1298842 - 1300008 + | hypothetical protein rpsA 1300407 - 1301570 + | 30S ribosomal protein S1 TERM 1930 1301603 - 1301641 + F 84 -9.3 -3.66117 | gap 2, opp_overlap 1301602 1301600 1301598, overlap 1301600 1301617 TAATTTAAGAGATAT GCATTACTAAAACACTTAT ATA AT-AG-GTTTTAGTAATGC TATTTATATAATTAC CLI_1241 1301753 - 1302172 + | thioesterase family protein CLI_1242 1302344 - 1302760 + | hypothetical protein TERM 1931 1303310 - 1303284 - f 71 -8.3 -3.07401 | overlap 1303282 1303280 AAAATATTATATAGA TTTATAATCTA ACAAG TAGATTATAAA AATAGGTTAGATGAA TERM 1932 1303485 - 1303501 + F 72 -5.9 -4.47183 | opp_overlap 1303495 GTAGGAGATATTGTA GTCTTTA AAT TAAAGGC TTTATTTGAGTACTC TERM 1933 1303514 - 1303530 + F 100 -7.3 -6.02919 | GGCTTTATTTGAGTA CTCTTCT GCT AGAAGGG TTTTTTTATTTATGC CLI_1243 1303629 - 1304636 + | putative ABC transporter, substrate-binding protein TERM 1934 1304762 - 1304778 + GF 74 -7.9 -3.78775 | ACCTTTCCTTTAGGA GCAGCTG TTG CAGCAGC TTTCCTAGTAAAAGG CLI_1244 1304636 - 1305541 + | ABC transporter, permease protein TERM 1935 1306228 - 1306215 - gf 89 -3.9 -6.13503 | GAGGAAGAAAAAAAA TCTTT AACT AAAGA AAAATTATTAAAATG CLI_1245 1305504 - 1306298 + | ABC transporter, ATP-binding protein TERM 1936 1306372 - 1306389 + F 86 -9.1 -4.48713 | opp_overlap 1306372 1306371 ATTCATCTATAATAG GCAGCTC TTAG GGGCTGC TTTATTATTACTAAA CLI_1246 1306628 - 1306930 + | hypothetical protein TERM 1937 1306944 - 1306985 + F 100 -11.9 -4.64657 | opp_overlap 1306951, overlap 1306945 AAAAATATAATTTAT ATTAAAAGTGCTGATTTAT GTAA ATAAACCAGCACTTTTAAG TTTTTACAAATTTAC TERM 1938 1306945 - 1306984 + F 100 -15.4 -3.38071 | opp_overlap 1306951, overlap 1306944 AAAATATAATTTATA TTAAAAGTGCTGATTTAT GTAA ATAAACCAGCACTTTTAA GTTTTTACAAATTTA TERM 1939 1306978 - 1306951 - f 100 -12.2 -4.36931 | opp_overlap 1306945 1306944 TAATTTATATTAAAA GTGCTGATTTAT GTAA ATAAACCAGCAC TTTTAAGTTTTTACA asdA 1307363 - 1309006 + | aspartate aminotransferase TERM 1940 1309045 - 1309095 + T 100 -11 -4.14511 | opp_overlap 1309050 1309088, overlap 1309050 TAATAGAGAAAATTT GAAAATAGATTTAATTTTAATATT TGT GGTGTTAAAATTAAATCTATTTTA TTTTAAAATAAGCTT TERM 1941 1309090 - 1309050 - T 75 -7.3 -4.29656 | opp_overlap 1309045 1309050, overlap 1309088 GAGAAAATTTGAAAA TAGATTTAATTTTAATA TTTGTGG TGTTAAAATTAAATCTA TTTTATTTTAAAATA TERM 1942 1309050 - 1309090 + T 100 -10.9 -5.09259 | opp_overlap 1309050 1309088, overlap 1309045 GAGAAAATTTGAAAA TAGATTTAATTTTAATATT TGT GGTGTTAAAATTAAATCTA TTTTATTTTAAAATA CLI_1248 1310015 - 1309134 - | hypothetical protein TERM 1943 1309813 - 1309824 + g 70 -4.4 -4.85433 | overlap 1309791 GTAAATAAAAATACT GGAA TATC TTCC TTTTTCAGTTTGTAT TERM 1944 1310314 - 1310345 + G 72 -8 -3.62522 | overlap 1310315 TAAACAGGGTTCTTG GCTTCAGAGGGAGT TTTT ACTTCCACTAAAGC TTATTAACAGAATTC TERM 1945 1310350 - 1310389 + G 72 -8.8 -2.90496 | gap 1, opp_overlap 1310358, overlap 1310354 1310355 1310357 TCCACTAAAGCTTAT TAACAGAATTCTTAGGAGT TTT ACTCCTTAGAAGTC-GTTA TCCTTTAGGAGAAGA TERM 1946 1310355 - 1310385 + G 76 -9.8 -2.75769 | opp_overlap 1310358, overlap 1310354 1310350 1310357 TAAAGCTTATTAACA GAATTCTTAGGAGT TTT ACTCCTTAGAAGTC GTTATCCTTTAGGAG CLI_1249 1310261 - 1310380 + | hypothetical protein TERM 1947 1310382 - 1310358 - f 90 -10.1 -3.71552 | opp_overlap 1310357 1310355 1310354 1310350 AGCTTATTAACAGAA TTCTTAGGAGT TTT ACTCCTTAGAA GTCGTTATCCTTTAG TERM 1948 1310583 - 1310533 - f 100 -17.4 -2.9957 | opp_overlap 1310533 1310534 1310536, overlap 1310517 1310536 1310546 1310550 AAAAAATATATGATA TTATTTACTTAAACAAATGCTTAT TAC ATAAGCATTTGTTTAAGTAAATGG TTTTTGAGGGGATAA TERM 1949 1310533 - 1310583 + F 100 -21.8 -4.57569 | opp_overlap 1310517 1310533 1310536 1310546 1310550, overlap 1310534 1310536 AAAAAATATATGATA TTATTTACTTAAACAAATGCTTAT TAC ATAAGCATTTGTTTAAGTAAATGG TTTTTGAGGGGATAA TERM 1950 1310534 - 1310582 + F 100 -23.1 -3.3422 | opp_overlap 1310517 1310533 1310536 1310546 1310550, overlap 1310533 1310536 AAAAATATATGATAT TATTTACTTAAACAAATGCTTAT TAC ATAAGCATTTGTTTAAGTAAATG GTTTTTGAGGGGATA TERM 1951 1310580 - 1310536 - f 100 -23.5 -2.70522 | opp_overlap 1310536 1310534 1310533, overlap 1310517 1310533 1310546 1310550 AAATATATGATATTA TTTACTTAAACAAATGCTTAT TAC ATAAGCATTTGTTTAAGTAAA TGGTTTTTGAGGGGA TERM 1952 1310536 - 1310580 + F 100 -23.5 -3.23708 | opp_overlap 1310517 1310533 1310536 1310546 1310550, overlap 1310534 1310533 AAATATATGATATTA TTTACTTAAACAAATGCTTAT TAC ATAAGCATTTGTTTAAGTAAA TGGTTTTTGAGGGGA TERM 1953 1310570 - 1310546 - f 100 -13.1 -3.67296 | opp_overlap 1310536 1310534 1310533, overlap 1310536 1310533 1310550 TATTATTTACTTAAA CAAATGCTTAT TAC ATAAGCATTTG TTTAAGTAAATGGTT TERM 1954 1310566 - 1310550 - f 82 -8.1 -4.46514 | opp_overlap 1310536 1310534 1310533, overlap 1310546 1310536 1310533 ATTTACTTAAACAAA TGCTTAT TAC ATAAGCA TTTGTTTAAGTAAAT TERM 1955 1311386 - 1311371 - g 72 -7.6 -3.56985 | opp_overlap 1311369, overlap 1311369 TATAAAAAAGGAAGA GGATCT AGAA AGATCC GCTGAGTTTTTTTTA CLI_1250 1310601 - 1311698 + | PfkB family kinase TERM 1956 1311820 - 1311808 - g 83 -7.7 -4.64766 | opp_overlap 1311808, overlap 1311816 GCCATATCCTAAAAA TGCAG AAA CTGCA TTAAATGTAGAAAAA CLI_1251 1311692 - 1312615 + | indigoidine synthase A family protein TERM 1957 1312645 - 1312616 - f 70 -5.9 -4.2204 | AAGCTTAATAAATAA TTTAAAACAGCTT TAAT AAGGTGTCTTAAA AAATAGATTTAATTT TERM 1958 1312906 - 1312931 + F 70 -2.6 -5.4588 | ATAAATTTTAAAAAA TTAGGCCT AAGATAATAA GGGCCTAA TTTTTTATGCTTTTA panE 1313107 - 1314018 + | 2-dehydropantoate 2-reductase TERM 1959 1314873 - 1314861 - g 81 -4.9 -5.42131 | TAATGATACAAAAAA TTCTT TGG AAGAA GAAATCAACACCTTA fchA 1314328 - 1314960 + | methenyltetrahydrofolate cyclohydrolase folD 1314960 - 1315808 + | methylenetetrahydrofolate dehydrogenase TERM 1960 1315869 - 1315825 - f 73 -4.5 -5.2197 | gap 1, opp_overlap 1315827 1315830, overlap 1315830 TATAAAAATTAAAAA GTAAAGCCCGTATCCTATGT TAGTTT ATATAGGATACAGGC-TTAT TTTTCTTATAATAAA TERM 1961 1315827 - 1315868 + F 100 -9.6 -5.22006 | opp_overlap 1315825 1315830, overlap 1315830 TAAAAATTAAAAAGT AAAGCCCGTATCCTATGT TAGTTT ATATAGGATACAGGCTTA TTTTTCTTATAATAA TERM 1962 1315865 - 1315830 - f 100 -11.3 -4.39092 | opp_overlap 1315830 1315827, overlap 1315825 AAATTAAAAAGTAAA GCCCGTATCCTATGT TAGTTT ATATAGGATACAGGC TTATTTTTCTTATAA TERM 1963 1315830 - 1315865 + F 100 -11.3 -4.68512 | opp_overlap 1315825 1315830, overlap 1315827 AAATTAAAAAGTAAA GCCCGTATCCTATGT TAGTTT ATATAGGATACAGGC TTATTTTTCTTATAA TERM 1964 1316073 - 1316057 - f 70 -3.1 -5.42265 | overlap 1316059 GGAAAGTAGAAAAAA CATATTT TTA AAATATA GAAATCATATGGGAT CLI_1255 1316128 - 1316922 + | HAD family hydrolase TERM 1965 1317033 - 1316988 - T 95 -13.1 -2.98003 | gap 1, opp_overlap 1316988 1316992 1316996, overlap 1316992 1316996 AAAATTTAATAACTA TAAATAAACACTATCAAAATCT ATT AGAA-TTGATAGTGTTTATTTA TTTTAATCTAATTTT TERM 1966 1316988 - 1317033 + T 100 -13.1 -4.41797 | gap 1, opp_overlap 1316988 1316992 1316996, overlap 1316992 1316996 AAAATTTAATAACTA TAAATAAACACTATCAAAATCT ATT AGAA-TTGATAGTGTTTATTTA TTTTAATCTAATTTT TERM 1967 1317029 - 1316992 - T 86 -9.5 -4.14257 | gap 1, opp_overlap 1316988 1316992 1316996, overlap 1316988 1316996 TTTAATAACTATAAA TAAACACTATCAAAATCT ATT AGAA-TTGATAGTGTTTA TTTATTTTAATCTAA TERM 1968 1316992 - 1317029 + T 95 -9.5 -4.75288 | gap 1, opp_overlap 1316992 1316988 1316996, overlap 1316988 1316996 TTTAATAACTATAAA TAAACACTATCAAAATCT ATT AGAA-TTGATAGTGTTTA TTTATTTTAATCTAA TERM 1969 1317025 - 1316996 - T 74 -5.9 -4.63526 | gap 1, opp_overlap 1316992 1316988 1316996, overlap 1316992 1316988 ATAACTATAAATAAA CACTATCAAAATCT ATT AGAA-TTGATAGTG TTTATTTATTTTAAT TERM 1970 1316996 - 1317025 + T 76 -5.9 -4.88786 | gap 1, opp_overlap 1316996 1316992 1316988, overlap 1316992 1316988 ATAACTATAAATAAA CACTATCAAAATCT ATT AGAA-TTGATAGTG TTTATTTATTTTAAT CLI_1256 1317655 - 1317149 - | putative diamine N-acetyltransferase TERM 1971 1317327 - 1317338 + g 74 -3 -5.39221 | AGATAGATTTCATTA CAAT CTTT ATTG TTTTTTAATTCTTCT TERM 1972 1317923 - 1317907 - g 81 -8.1 -4.29928 | AACTAACAGTGAAAA TAGTAGA AAC TCTACTA CAGGATATATGGATA CLI_1257 1317848 - 1317991 + | hypothetical protein TERM 1973 1318238 - 1318210 - g 71 -4.7 -4.77757 | opp_overlap 1318210 TTTTAAAAATTAAAA CTTTATATAAGTA TTC TACAAATATAAAG TTTATTAGTATAGTT CLI_1258 1318107 - 1318838 + | hypothetical protein CLI_1259 1318958 - 1319767 + | ZIP family zinc transporter TERM 1974 1319780 - 1319811 + F 100 -16 -3.62522 | opp_overlap 1319773, overlap 1319781 TAAACAGAGTTTTTG GCTTCAGAGGGAGT TTTT ACTCACTCTGAAGC TTATTAACAGACTTC TERM 1975 1319816 - 1319855 + F 100 -14.6 -2.90615 | gap 1, opp_overlap 1319773 1319819 1319821, overlap 1319820 1319821 1319823 1319823 CACTCTGAAGCTTAT TAACAGACTTCTTAGGAGT TTT ACTCCTTAGAAGTC-GTTA TCCTTTAGGGAAAAT TERM 1976 1319852 - 1319819 - f 93 -11.9 -3.18681 | gap 1, opp_overlap 1319816 1319820 1319821 1319823 1319823, overlap 1319821 TCTGAAGCTTATTAA CAGACTTCTTAGGAGT TTT ACTCCTTAGAAGTC-G TTATCCTTTAGGGAA TERM 1977 1319820 - 1319852 + F 95 -12.1 -3.60151 | opp_overlap 1319819 1319821, overlap 1319816 1319821 1319823 1319823 CTGAAGCTTATTAAC AGACTTCTTAGGAGT TTT ACTCCTTAGAAGTCG TTATCCTTTAGGGAA TERM 1978 1319851 - 1319821 - f 100 -15.6 -3.15574 | opp_overlap 1319820 1319816 1319821 1319823 1319823, overlap 1319819 TGAAGCTTATTAACA GACTTCTTAGGAGT TTT ACTCCTTAGAAGTC GTTATCCTTTAGGGA TERM 1979 1319821 - 1319851 + F 100 -15.6 -2.75769 | opp_overlap 1319821 1319819, overlap 1319820 1319816 1319823 1319823 TGAAGCTTATTAACA GACTTCTTAGGAGT TTT ACTCCTTAGAAGTC GTTATCCTTTAGGGA TERM 1980 1319823 - 1319849 + F 89 -12.4 -2.92144 | opp_overlap 1319821 1319819, overlap 1319823 1319821 1319820 1319816 AAGCTTATTAACAGA CTTCTTAGGAGT TTT ACTCCTTAGAAG TCGTTATCCTTTAGG TERM 1981 1320051 - 1320022 - f 72 -5.1 -5.00196 | opp_overlap 1320014 1320022, overlap 1320017 1320014 TCTTAAATAAGAAAA TACTATGATACAA TAGG TAGTTTCATAGTA TTTTTTATTTAAAAA TERM 1982 1320022 - 1320051 + F 84 -5.1 -5.63517 | opp_overlap 1320022 1320017 1320014, overlap 1320014 TCTTAAATAAGAAAA TACTATGATACAA TAGG TAGTTTCATAGTA TTTTTTATTTAAAAA CLI_1260 1320439 - 1320876 + | rrf2 family protein TERM 1983 1321232 - 1321219 - g 76 -2.5 -5.58074 | TAATTATGAAAAAAA TATAT AAAA ATATA ACAGAATTAATAGGA cysK-2 1321209 - 1322138 + | cysteine synthase A CLI_1262 1322183 - 1322851 + | His/Glu/Gln/Arg/opine ABC transporter permease TERM 1984 1323241 - 1323225 - g 90 -6.7 -5.62045 | ACAGATAAGAAAAAA GAAAAAT ATT ATTTTTC AAAACCTTATGTTTA CLI_1263 1322886 - 1323710 + | polar amino acid ABC transporter amino acid-binding protein iscS-1 1323811 - 1324941 + | cysteine desulfhydrase CLI_1265 1325013 - 1325813 + | hypothetical protein TERM 1985 1326119 - 1326080 - f 73 -8.8 -2.90615 | gap 1, opp_overlap 1326087 1326116, overlap 1326083 1326084 1326086 ATTTCCCCTAAAGGA TAAC-GACTTCTAAGGAGT AAA ACTCCTAAGAATTCTGTTA ATAAGCTTCAGGGGG TERM 1986 1326114 - 1326084 - f 79 -9.8 -2.75769 | opp_overlap 1326087, overlap 1326083 1326080 1326086 CCCCTAAAGGATAAC GACTTCTAAGGAGT AAA ACTCCTAAGAATTC TGTTAATAAGCTTCA TERM 1987 1326087 - 1326111 + F 90 -10.1 -3.71552 | opp_overlap 1326086 1326084 1326083 1326080 CTAAAGGATAACGAC TTCTAAGGAGT AAA ACTCCTAAGAA TTCTGTTAATAAGCT TERM 1988 1326155 - 1326124 - f 95 -11.6 -3.62522 | opp_overlap 1326116 1326132 GAATTCTGTTAATAA GCTTCAGGGGGAGT AAAA ACTCCCTCTTAAGC CAAGAACTCTGTTTA TERM 1989 1326132 - 1326147 + F 74 -9 -3.01712 | opp_overlap 1326124, overlap 1326116 TTAATAAGCTTCAGG GGGAGT AAAA ACTCCC TCTTAAGCCAAGAAC CLI_1266 1326200 - 1326328 + | hypothetical protein trmU-1 1326444 - 1327514 + | tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase TERM 1990 1327564 - 1327520 - T 71 -5.3 -4.67692 | opp_overlap 1327527 1327529, overlap 1327525 1327527 1327529 TGAAAAGTAAAGAAA TAAAAGATATTCTCAAAATAA AAT CTATTTTGAGAATCTTTTTTT ATTTAAATATATTTT TERM 1991 1327559 - 1327525 - T 74 -5.2 -5.20222 | opp_overlap 1327527 1327529, overlap 1327520 1327527 1327529 AGTAAAGAAATAAAA GATATTCTCAAAATAA AAT CTATTTTGAGAATCTT TTTTTATTTAAATAT TERM 1992 1327527 - 1327557 + T 95 -7.1 -5.96894 | opp_overlap 1327527 1327525 1327520 1327529, overlap 1327529 TAAAGAAATAAAAGA TATTCTCAAAATA AAATC TATTTTGAGAATC TTTTTTTATTTAAAT TERM 1993 1327557 - 1327527 - T 78 -7.8 -4.20284 | opp_overlap 1327527 1327529, overlap 1327525 1327520 1327529 TAAAGAAATAAAAGA TATTCTCAAAATAA AAT CTATTTTGAGAATC TTTTTTTATTTAAAT TERM 1994 1327555 - 1327529 - T 91 -10.4 -3.65097 | opp_overlap 1327527 1327529, overlap 1327527 1327525 1327520 AAGAAATAAAAGATA TTCTCAAAATAA AAT CTATTTTGAGAA TCTTTTTTTATTTAA TERM 1995 1327529 - 1327555 + T 93 -9.7 -4.61687 | opp_overlap 1327529 1327527 1327525 1327520, overlap 1327527 AAGAAATAAAAGATA TTCTCAAAATA AAATC TATTTTGAGAA TCTTTTTTTATTTAA CLI_1268 1327804 - 1327592 - | hypothetical protein TERM 1996 1327892 - 1327869 - H 71 -8.4 -3.02265 | opp_overlap 1327868, overlap 1327868 TAACATTAAAAATAG TGTTTATTAA CGCA TTAATAAACA AATTGTTCTTTATTT CLI_1269 1328076 - 1328795 + | LytTr family DNA-binding response regulator CLI_1270 1329009 - 1328827 - | hypothetical protein CLI_1271 1329125 - 1330135 + | sensor histidine kinase TERM 1997 1330316 - 1330270 - f 100 -21.3 -3.93026 | opp_overlap 1330270 AATATCTTAATCAAA GGGCACTTGCAAATATTAGAT TTTTT ATTTAATATTTGCAAGTGCCC TTTAAAAAGAGTGTT TERM 1998 1330270 - 1330316 + F 100 -23.5 -3.54307 | opp_overlap 1330270 AATATCTTAATCAAA GGGCACTTGCAAATATTAGAT TTTTT ATTTAATATTTGCAAGTGCCC TTTAAAAAGAGTGTT bcrA 1330511 - 1331425 + | bacitracin ABC transporter, ATP-binding protein BcrA CLI_1273 1331427 - 1332170 + | hypothetical protein CLI_1274 1332772 - 1334658 + | glycerophosphoryl diester phosphodiesterase family protein CLI_1275 1335014 - 1335178 + | hypothetical protein TERM 1999 1335162 - 1335218 + T 82 -10.6 -2.9062 | gap 1, opp_overlap 1335176, overlap 1335176 CCAAAGAATGGGTAG ATACTAATCAAAAATAGAAGGGA-ACT TATA AGTGTCCCTTCTATTTTTGATTTATAC TAGTTATCTGCTAAA TERM 2000 1335176 - 1335204 + T 100 -9.8 -5.05505 | gap 1, opp_overlap 1335176, overlap 1335162 GATACTAATCAAAAA TAGAAGGGA-ACT TATA AGTGTCCCTTCTA TTTTTGATTTATACT TERM 2001 1335204 - 1335176 - T 100 -9.8 -4.91873 | gap 1, opp_overlap 1335162 1335176 GATACTAATCAAAAA TAGAAGGGA-ACT TATA AGTGTCCCTTCTA TTTTTGATTTATACT CLI_1276 1338736 - 1335218 - | pyruvate ferredoxin oxidoreductase TERM 2002 1337113 - 1337132 + g 70 -5.2 -4.53765 | opp_overlap 1337113 1337116 TAGATATACCATCAA TAATATAA AAAT TTATATTA TTTTCTGCTATATAT TERM 2003 1337733 - 1337743 + g 70 -5.4 -4.67982 | opp_overlap 1337715 1337713 1337721 ATAGGCTCTCCTATA GAAC CAG GTTC TTTTGTTCGGTCAAG TERM 2004 1337974 - 1337958 - G 70 -5.1 -4.59414 | opp_overlap 1337958 1337961 1337964 CCATAATAATCAAAA GGATGAT AGG ATCTTCC TGTAATTTTTTCTAT TERM 2005 1337961 - 1337979 + g 74 -2.4 -5.59879 | opp_overlap 1337958, overlap 1337958 1337964 TAATAATCAAAAGGA TGATAGGA TCT TCCTGTAA TTTTTTCTATTTCTC TERM 2006 1338616 - 1338648 + g 76 -9.2 -3.08133 | overlap 1338619 GAGCCGACCACTCGT CTACACCTTCTGCC ATAGG GGTGGAAGGTGTAA TTGGATAGATAGCTG TERM 2007 1338619 - 1338645 + g 82 -10.9 -2.75712 | overlap 1338616 CCGACCACTCGTCTA CACCTTCTGCC ATAGG GGTGGAAGGTG TAATTGGATAGATAG CLI_1277 1339039 - 1339659 + | TetR family transcriptional regulator CLI_1278 1339665 - 1340912 + | monovalent cation:proton antiporter-2 (CPA2) family protein TERM 2008 1340945 - 1340974 + F 75 -8.7 -3.12856 | gap 1, opp_overlap 1340945 1340949, overlap 1340943 1340942 AAAAGAGCAAATGAA CTTAGAGGGCACTG ATA TAGTGCTCTC-AAG TAGTTTATCTTAATT TERM 2009 1341282 - 1341268 - f 79 -7.2 -4.64766 | opp_overlap 1341267 1341262 1341268 TTTATATCTGAAAAA TCATAG AAA CTATGA GTTTTGTTTCATGTA TERM 2010 1341982 - 1342000 + G 85 -4.6 -5.63103 | opp_overlap 1341981 1341982 1341984 TTTAAAAAAAGGAAT GATAAAGA GAA TCCTTATC TTTTTTTGCTTCAGG CLI_1279 1341325 - 1342800 + | hypothetical protein TERM 2011 1342849 - 1342801 - f 100 -18 -3.17392 | opp_overlap 1342808, overlap 1342808 TATTGTGGAACCTAA TACAAAATGAGCTAGTAAAA TATATTAAG TTTTACTAGCTCATTTTGTA TAAAAATATAATAGA TERM 2012 1342842 - 1342808 - f 100 -10.3 -4.7033 | opp_overlap 1342808, overlap 1342801 GAACCTAATACAAAA TGAGCTAGTAAAA TATATTAAG TTTTACTAGCTCA TTTTGTATAAAAATA TERM 2013 1342808 - 1342842 + F 100 -12.4 -4.53303 | opp_overlap 1342808 1342801 GAACCTAATACAAAA TGAGCTAGTAAAATAT ATT AAGTTTTACTAGCTCA TTTTGTATAAAAATA TERM 2014 1342970 - 1342958 - f 73 -3.5 -5.5454 | opp_overlap 1342969, overlap 1342969 CGAAATAAATAAAAA TAATA ACA TATTA ACTAATATTAGTTAC TERM 2015 1343250 - 1343276 + F 71 -8.3 -3.06583 | opp_overlap 1343249, overlap 1343254 TTTAATATAAAAGGC TTAATCTTATA CCTAA TATAAGATTAA TATTAACAATGTTAT TERM 2016 1343720 - 1343737 + G 70 -6.3 -4.15222 | gap 1, overlap 1343720 TATATAGATACTTTT GGG-CTAG AAA CTAGACCC TTTGTTCAAGAAAAT CLI_1280 1343381 - 1345033 + | amine oxidase, flavin-containing TERM 2017 1345037 - 1345070 + T 86 -9.2 -4.14908 | opp_overlap 1345037 1345041, overlap 1345041 TATAAAGCTTAGAAA TAAAGAAGTATATT TTATTT AATATGCTTCTTTA TTTATGCTTATATTT TERM 2018 1345070 - 1345037 - T 71 -7 -3.96291 | opp_overlap 1345037 1345041, overlap 1345041 TATAAAGCTTAGAAA TAAAGAAGTATATT TTATTT AATATGCTTCTTTA TTTATGCTTATATTT TERM 2019 1345041 - 1345066 + T 71 -5.6 -4.63526 | opp_overlap 1345041 1345037, overlap 1345037 AAGCTTAGAAATAAA GAAGTATATT TTATTT AATATGCTTC TTTATTTATGCTTAT TERM 2020 1345125 - 1345113 - T 70 -4.9 -4.8048 | opp_overlap 1345104 CCTTTATATTAAAAA TATCT TTT AGATA TGAAAATGAATAAGC CLI_1281 1346168 - 1345278 - | AraC family transcriptional regulator CLI_1282 1346368 - 1347744 + | sugar transporter TERM 2021 1348372 - 1348352 - g 80 -6.9 -4.8048 | overlap 1348354 GTTGCAGATCAAAAA TTTCCATCT TGT AGATGGACA GGAGAGCAATTGAGA TERM 2022 1348370 - 1348354 - g 73 -9.5 -2.68202 | overlap 1348352 TGCAGATCAAAAATT TCCATCT TGT AGATGGA CAGGAGAGCAATTGA CLI_1283 1347758 - 1349086 + | O-glycosyl hydrolase, family protein TERM 2023 1349096 - 1349116 + F 85 -8.2 -4.62336 | opp_overlap 1349094 1349095 GAATAATTATTAAGG GGATGCCC AGGTA GGGCTTCC TTTTTCAAATAAGCT CLI_1284 1349149 - 1350090 + | ROK family protein CLI_1285 1350093 - 1351538 + | glycosy hydrolase family protein TERM 2024 1351643 - 1351684 + F 80 -6.1 -5.24796 | opp_overlap 1351643 1351675 ATTTTATAGAAAAAA GTGTTTTTTATTATAGGTT ATAT ATTCCATAATAAAAAGCAC TTTTTATTATGTCAA TERM 2025 1351684 - 1351643 - f 72 -4 -5.37043 | opp_overlap 1351643, overlap 1351675 ATTTTATAGAAAAAA GTGTTTTTTATTATAG GTTATATATT CCATAATAAAAAGCAC TTTTTATTATGTCAA TERM 2026 1351946 - 1351999 + F 100 -14.6 -3.33696 | opp_overlap 1351948 1351951 1351998, overlap 1351948 1351951 1351959 AATAAAAATAATTTA AATAAGTTATAAATATTATAATAT TAATGT ATATTATAATATTTATAACTTATC TTAATTAAGAAAGGA TERM 2027 1351997 - 1351948 - f 100 -17.2 -3.95126 | opp_overlap 1351946 1351948 1351951 1351959, overlap 1351951 TAAAAATAATTTAAA TAAGTTATAAATATTATAATAT TAATGT ATATTATAATATTTATAACTTA TCTTAATTAAGAAAG TERM 2028 1351948 - 1351997 + F 100 -17.2 -3.23853 | opp_overlap 1351948 1351951, overlap 1351946 1351951 1351959 TAAAAATAATTTAAA TAAGTTATAAATATTATAATAT TAATGT ATATTATAATATTTATAACTTA TCTTAATTAAGAAAG TERM 2029 1351951 - 1351994 + F 100 -14.5 -3.76048 | opp_overlap 1351948 1351951, overlap 1351948 1351946 1351959 AAATAATTTAAATAA GTTATAAATATTATAATAT TAATGT ATATTATAATATTTATAAC TTATCTTAATTAAGA TERM 2030 1351994 - 1351951 - f 100 -14.5 -4.05677 | opp_overlap 1351951 1351948 1351946 1351959, overlap 1351948 AAATAATTTAAATAA GTTATAAATATTATAATAT TAATGT ATATTATAATATTTATAAC TTATCTTAATTAAGA amyB 1352211 - 1353839 + | beta-amylase TERM 2031 1354216 - 1354202 - f 71 -5.6 -4.70772 | opp_overlap 1354215 ACATATCTAACAAAA CGAGGT GGT ACCACG TGAGTATAACTCCCG TERM 2032 1354257 - 1354226 - f 74 -8.1 -3.4178 | gap 1, opp_overlap 1354215 1354227, overlap 1354227 ACCACGTGAGTATAA CTCCCGTCCTCTAG TTAAT CTAGAG-ACGGGAT TTTTTGCATTTAAAA TERM 2033 1354227 - 1354256 + F 100 -11.6 -5.22039 | gap 1, opp_overlap 1354226 1354227, overlap 1354215 CCACGTGAGTATAAC TCCCGTCCTCTAG TTAAT CTAGAG-ACGGGA TTTTTTGCATTTAAA TERM 2034 1354256 - 1354227 - f 86 -11.6 -2.64747 | gap 1, opp_overlap 1354215 1354227, overlap 1354226 CCACGTGAGTATAAC TCCCGTCCTCTAG TTAAT CTAGAG-ACGGGA TTTTTTGCATTTAAA TERM 2035 1355757 - 1355743 - g 78 -4.3 -5.38497 | overlap 1355749 1355751 ATGTAAAGTAAAAAA TGAAG ACATA CTTCA AGTAGGAAAGAAGAA tyrS-1 1354598 - 1355800 + | tyrosyl-tRNA synthetase TERM 2036 1355891 - 1355864 - f 93 -8.7 -4.77216 | opp_overlap 1355864, overlap 1355848 AATAATATTTAAAAA CATTATCATTT AATTTA AAATGATAATG TTTTTTTTTATGAAA TERM 2037 1355864 - 1355891 + F 100 -8.7 -6.22802 | opp_overlap 1355848 1355864 AATAATATTTAAAAA CATTATCATTT AATTTA AAATGATAATG TTTTTTTTTATGAAA TERM 2038 1356359 - 1356349 - g 91 -4 -6.07374 | AGAAAAAAGAAAAAA CAAA TTT TTTG ATAACTACATTTTAA CLI_1288 1356086 - 1356457 + | GntR family transcriptional regulator CLI_1289 1356450 - 1357322 + | ABC transporter, ATP-binding protein CLI_1290 1357323 - 1358072 + | hypothetical protein TERM 2039 1358139 - 1358179 + T 95 -8.6 -5.21709 | gap 1, opp_overlap 1358139 TGTAAAATAAATAAA TTTAAGCTTC-AAGGGAGT TAAA ACTCTATTAGAAGCTTAAA TTTTTTGATATAAAA TERM 2040 1358179 - 1358139 - T 78 -6.4 -4.8743 | gap 1, opp_overlap 1358139 TGTAAAATAAATAAA TTTAAGCTTC-AAGGGAGT TAAA ACTCTATTAGAAGCTTAAA TTTTTTGATATAAAA CLI_1291 1358576 - 1358208 - | hypothetical protein TERM 2041 1358495 - 1358485 - G 78 -6.8 -4.66953 | opp_overlap 1358485, overlap 1358486 CCAACAGGGGAAAAA CCAC CTT GTGG TGTCATAAAAGGTGG TERM 2042 1359692 - 1359676 - g 70 -3.7 -5.07523 | overlap 1359667 GATATACAAAGAAAA CCTTGTT TTG AAAAAGG CGTAAAAGTTTTTGA CLI_1292 1358923 - 1359816 + | hypothetical protein TERM 2043 1359857 - 1359896 + F 100 -15.4 -4.62471 | opp_overlap 1359850 1359862 1359865, overlap 1359860 ATAATAAATAATGCT TAAGATAATTTAGGAGAA GGAT TTCTCCTAAATTATCTAA TTTTATATGTGGATT TERM 2044 1359860 - 1359893 + F 100 -17.1 -3.24281 | opp_overlap 1359850 1359862 1359865, overlap 1359857 ATAAATAATGCTTAA GATAATTTAGGAGAA GGAT TTCTCCTAAATTATC TAATTTTATATGTGG TERM 2045 1359891 - 1359862 - f 100 -13.9 -3.08349 | opp_overlap 1359860 1359857, overlap 1359850 1359865 AAATAATGCTTAAGA TAATTTAGGAGAA GGAT TTCTCCTAAATTA TCTAATTTTATATGT TERM 2046 1359888 - 1359865 - f 95 -11.2 -3.67498 | opp_overlap 1359860 1359857, overlap 1359862 1359850 TAATGCTTAAGATAA TTTAGGAGAA GGAT TTCTCCTAAA TTATCTAATTTTATA TERM 2047 1361059 - 1361048 - g 86 -3 -5.9003 | overlap 1361052 AAAGGAAGAAAAAAA GAAA CAAG TTTC TAATAAAAATCTTGA TERM 2048 1361919 - 1361909 - g 91 -5.4 -5.89659 | AGAAAAAAAGAAAAA GCTT CCT AAGC TAAATATTGAATTGA TERM 2049 1362279 - 1362269 - g 91 -5.4 -5.89659 | AGAAAAAAAGAAAAA GCTT CCT AAGC TAAATATTGAATTGA TERM 2050 1362596 - 1362586 - g 70 -5.4 -4.67692 | GGAAAAGTAAACAAA TTCC GAA GGAA AACGCTGAATTAAGG TERM 2051 1363219 - 1363208 - g 86 -3 -5.9003 | overlap 1363212 AAAGGAAGAAAAAAA GAAA CAAG TTTC TAATAAAAATCTTGA CLI_1293 1360002 - 1364333 + | viral A-type inclusion repeat-containing protein CLI_1294 1364411 - 1365925 + | glycosy hydrolase family protein TERM 2052 1365946 - 1365964 + F 87 -11 -3.00544 | opp_overlap 1365946, overlap 1365961 TAATTTAACTAGTAA CCCAGTAC ATG GTGCTGGG TCTCTCATAATTTTA TERM 2053 1365964 - 1365946 - f 75 -8.8 -3.28984 | opp_overlap 1365946 1365961 TAATTTAACTAGTAA CCCAGTAC ATG GTGCTGGG TCTCTCATAATTTTA CLI_1295 1366099 - 1367358 + | putative sensory box-containing diguanylate cyclase CLI_1296 1367309 - 1367428 + | hypothetical protein TERM 2054 1367413 - 1367460 + F 84 -9.6 -3.70102 | opp_overlap 1367413, overlap 1367410 1367450 TTTAATAAAAATTAG GGATGTATTTTTATAGATAATA GGTA TGTTATTTATATAAATATATCC TATTTAATTTTACAT sdhB 1367759 - 1368433 + | L-serine dehydratase, iron-sulfur-dependent, beta subunit sdhA 1368446 - 1369336 + | L-serine dehydratase, iron-sulfur-dependent, alpha subunit TERM 2055 1369404 - 1369368 - f 87 -6.7 -5.27769 | opp_overlap 1369368 ATAAAAAATGAAAAA GCTATGAAATATAGG ATTAATA CCTTAATTTCATAGC TTTTTCATTTTTTAT TERM 2056 1369368 - 1369404 + F 87 -6.7 -5.27769 | opp_overlap 1369368 ATAAAAAATGAAAAA GCTATGAAATATAGG ATTAATA CCTTAATTTCATAGC TTTTTCATTTTTTAT TERM 2057 1369422 - 1369459 + F 81 -10.3 -2.71329 | opp_overlap 1369424, overlap 1369421 1369419 1369424 TTTCATTTTTTATAT TATTTATTTGTATTTAA TTAA TTGAGTACAAATAAATA CTGTTTACTATCTAG CLI_1300 1369761 - 1369970 + | hypothetical protein TERM 2058 1370034 - 1370082 + T 93 -12.1 -3.17229 | opp_overlap 1370035 1370040, overlap 1370035 1370040 1370080 GCACTTAATAATTAA ATAAAAGCTATGAATTAAGAAAA TAA TTTCCTAAATTCATAGCTTTTAA TCTTAATAGTAAGCT TERM 2059 1370081 - 1370035 - T 100 -17.8 -4.08689 | opp_overlap 1370034 1370035 1370040 1370080, overlap 1370040 CACTTAATAATTAAA TAAAAGCTATGAATTAAGAAAA TAA TTTCCTAAATTCATAGCTTTTA ATCTTAATAGTAAGC TERM 2060 1370035 - 1370081 + T 100 -15.6 -2.50016 | opp_overlap 1370035 1370040, overlap 1370034 1370040 1370080 CACTTAATAATTAAA TAAAAGCTATGAATTAAGAAAA TAA TTTCCTAAATTCATAGCTTTTA ATCTTAATAGTAAGC TERM 2061 1370076 - 1370040 - T 100 -13.3 -5.03713 | opp_overlap 1370040 1370035 1370034, overlap 1370035 AATAATTAAATAAAA GCTATGAATTAAGAAAA TAA TTTCCTAAATTCATAGC TTTTAATCTTAATAG TERM 2062 1370040 - 1370076 + T 100 -11.1 -4.44797 | opp_overlap 1370035 1370040, overlap 1370035 1370034 AATAATTAAATAAAA GCTATGAATTAAGAAAA TAA TTTCCTAAATTCATAGC TTTTAATCTTAATAG CLI_1301 1370272 - 1370129 - | hypothetical protein TERM 2063 1370283 - 1370295 + H 70 -6.3 -4.35474 | opp_overlap 1370282 TTCATTAAAAATACC TCCTT AAA AAGGA TTATTATTTTATTTA CLI_1302 1370356 - 1370484 + | hypothetical protein CLI_1303 1370537 - 1371121 + | hypothetical protein TERM 2064 1371270 - 1371239 - T 80 -9.4 -3.20878 | TAATATTTAAGCTAA CGCTCTAATGCCAC GTCT GTGGCAACAGAGCT AAGTAAACGTCCTGT CLI_1304 1372254 - 1371439 - | alpha/beta fold family hydrolase TERM 2065 1371818 - 1371834 + g 74 -6.7 -4.25104 | opp_overlap 1371818 TCTGATGTTAATTTA GATAATA ACT TATTATC TTTTACTAAAACAAC CLI_1305 1373535 - 1372567 - | dipeptidase family protein TERM 2066 1373915 - 1373885 - R 95 -11.4 -3.51419 | opp_overlap 1373884 1373891, overlap 1373891 TTATTAAATATAACA TAAAAAGCGTGA TGAATTT TCACGCTTTTTA ATATATACAGTATTA TERM 2067 1373909 - 1373891 - R 80 -6 -5.18995 | opp_overlap 1373884 1373891, overlap 1373885 AATATAACATAAAAA GCGTGA TGAATTT TCACGC TTTTTAATATATACA TERM 2068 1373891 - 1373909 + r 76 -6 -4.84527 | opp_overlap 1373891 1373885, overlap 1373884 AATATAACATAAAAA GCGTGA TGAATTT TCACGC TTTTTAATATATACA CLI_1306 1374624 - 1373932 - | hypothetical protein CLI_1307 1376014 - 1374731 - | putative ABC transporter, permease protein TERM 2069 1374814 - 1374803 - G 72 -4.4 -5.06585 | TAAACCAGATAAAAA TCCT ACAC AGGA TGAAAAGAACAATAC CLI_1308 1376831 - 1376016 - | hypothetical protein CLI_1309 1377542 - 1376868 - | putative oligopeptide ABC transporter, ATP-binding protein TERM 2070 1377689 - 1377643 - R 100 -13.5 -3.28497 | opp_overlap 1377648 1377651, overlap 1377648 TTACTTTAAATTTAA CAAAAGAATCATTATATAGTA TTTTG TTCTATATAATGATTCTTTTA AGATTGTCATTTATT TERM 2071 1377684 - 1377648 - R 100 -11.2 -4.75309 | opp_overlap 1377648 1377651, overlap 1377643 TTAAATTTAACAAAA GAATCATTATATAGTA TTTTG TTCTATATAATGATTC TTTTAAGATTGTCAT TERM 2072 1377648 - 1377684 + r 100 -11.9 -4.22338 | opp_overlap 1377648 1377643, overlap 1377651 TTAAATTTAACAAAA GAATCATTATATAGTAT TTT GTTCTATATAATGATTC TTTTAAGATTGTCAT TERM 2073 1377651 - 1377681 + r 78 -7.8 -4.22535 | opp_overlap 1377648 1377643, overlap 1377648 AATTTAACAAAAGAA TCATTATATAGTAT TTT GTTCTATATAATGA TTCTTTTAAGATTGT CLI_1310 1378544 - 1377696 - | putative oligopeptide ABC transporter, permease protein CLI_1311 1379503 - 1378550 - | putative oligopeptide ABC transporter, permease protein TERM 2074 1379092 - 1379073 - G 70 -3.6 -5.02715 | opp_overlap 1379076, overlap 1379074 ATAGCAAACCAAAAA CTAGGTAT AGAT ATACCTAT ATAAGAGATTACTGA TERM 2075 1379464 - 1379481 + g 75 -4.2 -5.28561 | TGAAAATAAGTATGG GAATTG CTTCTA CAATTC TTTTTCTTATGTATT TERM 2076 1379681 - 1379651 - R 70 -4.7 -4.89063 | opp_overlap 1379651 TTATTTAAAAATAAA CGGTATCAAAAGG GTAAT CCAATTAATACCG TCTTTTAACTATTAA TERM 2077 1379685 - 1379697 + r 77 -3.5 -5.71295 | CAATTAATACCGTCT TTTAA CTA TTAAA TTTTTATTTTTCTAT CLI_1312 1381299 - 1379701 - | putative oligopeptide ABC transporter, oligopeptide-binding protein TERM 2078 1380294 - 1380326 + g 77 -8.5 -3.72695 | opp_overlap 1380302, overlap 1380302 AGGCATTCTTAGGTA GTGGAGAATAGGCCT TAG GGGCATATTTTTCAC TTTCATAAGCAGCCT TERM 2079 1381532 - 1381548 + H 100 -8.1 -5.55769 | GTTATTAAAGCCCAG GGATTTA ACT TAAATCC TTTTTTATTGTGCAA CLI_1313 1381590 - 1381751 + | hypothetical protein TERM 2080 1381974 - 1381949 - g 72 -7.7 -3.55857 | opp_overlap 1381949 1381948, overlap 1381947 ATTAAAAGAAACATA TGAAGAAAGGT TTGG ACCTTTATTCA ATTTTGGTTTCAGTA cotJB 1381785 - 1382057 + | spore coat peptide assembly protein CotJB cotJC 1382088 - 1382660 + | spore coat peptide assembly protein CotJC TERM 2081 1382755 - 1382790 + F 74 -4.9 -5.24799 | opp_overlap 1382752 1382755 ATAATTATAAAATAA CAATCCAAATTAAAT GATATA ATTTTCTTTGGATTG TTTTTATATTTGTAA TERM 2082 1382794 - 1382825 + F 85 -10.5 -3.00774 | opp_overlap 1382810 1382821, overlap 1382821 TTCTTTGGATTGTTT TTATATTTGTAAC TCATTT GTTACAAATATAA TGTATAATTACAATA CLI_1316 1382890 - 1383909 + | hypothetical protein TERM 2083 1384087 - 1384068 - g 80 -2.2 -5.70829 | overlap 1384072 AAGAGGATAAAAAAA TAAAGAAA ACTG TTTCTATA GATGTGCCAGATTAT TERM 2084 1384083 - 1384072 - g 71 -3 -5.27709 | overlap 1384068 GGATAAAAAAATAAA GAAA ACTG TTTC TATAGATGTGCCAGA TERM 2085 1384344 - 1384333 - g 78 -3 -5.50499 | overlap 1384340 TGATAGTGAAAAAAA TGAA AAAT TTCA GCTGGAAGATGAAAA TERM 2086 1384358 - 1384340 - g 77 -4.6 -5.31158 | overlap 1384333 GAAAAAAATGAAAAA TTTCAGCT GGA AGATGAAA ATGGGAAAAAAACTA CLI_1317 1383926 - 1384990 + | hypothetical protein TERM 2087 1385048 - 1385079 + F 72 -8 -3.62522 | overlap 1385049 TAAACAGAGTTCTTG ACTTTAGAGGGAGT GTTT ACTCCCCCTGAAGC TTATTAACAGAATTC TERM 2088 1385049 - 1385078 + F 88 -11.5 -2.77192 | overlap 1385048 AAACAGAGTTCTTGA CTTTAGAGGGAGT GTTT ACTCCCCCTGAAG CTTATTAACAGAATT TERM 2089 1385084 - 1385123 + F 74 -8.8 -2.96873 | gap 1, opp_overlap 1385092, overlap 1385088 1385089 CCCCCTGAAGCTTAT TAACAGAATTCTTAGGAGT TTT ACTCCTTAGAAGTC-GTTA TCCTTTAGTAGAAAT TERM 2090 1385089 - 1385119 + F 80 -9.8 -2.77227 | opp_overlap 1385092, overlap 1385088 1385084 TGAAGCTTATTAACA GAATTCTTAGGAGT TTT ACTCCTTAGAAGTC GTTATCCTTTAGTAG TERM 2091 1385116 - 1385092 - f 90 -10.1 -3.71552 | opp_overlap 1385089 1385088 1385084 AGCTTATTAACAGAA TTCTTAGGAGT TTT ACTCCTTAGAA GTCGTTATCCTTTAG TERM 2092 1385719 - 1385709 - g 85 -2.6 -5.86609 | TTAAAAAAATAAAAA TATA CGA TATA GATGATAGGGAATTA CLI_1318 1385585 - 1386076 + | hypothetical protein CLI_1319 1386711 - 1386319 - | hypothetical protein dut 1387058 - 1387684 + | deoxyuridine 5'-triphosphate nucleotidohydrolase TERM 2093 1387687 - 1387730 + T 100 -15.6 -2.87888 | opp_overlap 1387687 1387691 1387696, overlap 1387680 1387691 1387696 AGGAGTAAAATAATA TTAATAAAAGGTGCTGAAGG TTAA CTTTCAGCACCTTTCATTGA ATTATATATTATTTT TERM 2094 1387730 - 1387687 - T 100 -13.4 -3.73084 | opp_overlap 1387687 1387680 1387691 1387696, overlap 1387691 1387696 AGGAGTAAAATAATA TTAATAAAAGGTGCTGAAGG TTAA CTTTCAGCACCTTTCATTGA ATTATATATTATTTT TERM 2095 1387691 - 1387726 + T 100 -14.2 -3.28979 | opp_overlap 1387687 1387691 1387696, overlap 1387687 1387680 1387696 GTAAAATAATATTAA TAAAAGGTGCTGAAGG TTAA CTTTCAGCACCTTTCA TTGAATTATATATTA TERM 2096 1387726 - 1387691 - T 100 -14.2 -3.53836 | opp_overlap 1387691 1387687 1387680 1387696, overlap 1387687 1387696 GTAAAATAATATTAA TAAAAGGTGCTGAAGG TTAA CTTTCAGCACCTTTCA TTGAATTATATATTA TERM 2097 1387696 - 1387721 + T 100 -14.1 -3.97057 | opp_overlap 1387691 1387687 1387696, overlap 1387691 1387687 1387680 ATAATATTAATAAAA GGTGCTGAAGG TTAA CTTTCAGCACC TTTCATTGAATTATA TERM 2098 1387721 - 1387696 - T 100 -11.9 -4.79657 | opp_overlap 1387696 1387691 1387687 1387680, overlap 1387691 1387687 ATAATATTAATAAAA GGTGCTGAAGG TTAA CTTTCAGCACC TTTCATTGAATTATA CLI_1321 1387935 - 1387744 - | small acid-soluble spore protein, H-type TERM 2099 1387867 - 1387893 + g 76 -5.3 -5.08169 | overlap 1387869 TTCTATATGAACTGG TGTATTCTTGT AATAA ACAGGAATATA TTTTTTAGAGTCTAT TERM 2100 1388343 - 1388381 + r 88 -4.7 -5.96219 | opp_overlap 1388347 1388358, overlap 1388345 TCCTAAGTTTTAAAT TTAACTTCACCTAAATA AATAA TATTTAGGTGAAGGGCA TTTTTTTTATGAATA TERM 2101 1388377 - 1388347 - R 100 -14.3 -3.28269 | opp_overlap 1388345 1388343, overlap 1388358 AAGTTTTAAATTTAA CTTCACCTAAATA AATAA TATTTAGGTGAAG GGCATTTTTTTTATG TERM 2102 1388414 - 1388448 + r 71 -6.7 -4.1523 | gap 1, opp_overlap 1388421, overlap 1388421 AGATAAAAAATTATA TTA-AAAAGCTAGTCT ATTA AGACTAGCTTTAATAA TTATTTCTCATTAGG TERM 2103 1388421 - 1388440 + r 95 -10.8 -3.90738 | opp_overlap 1388421, overlap 1388414 AAATTATATTAAAAA GCTAGTCT ATTA AGACTAGC TTTAATAATTATTTC TERM 2104 1388440 - 1388421 - R 100 -10.8 -4.85177 | opp_overlap 1388421 1388414 AAATTATATTAAAAA GCTAGTCT ATTA AGACTAGC TTTAATAATTATTTC TERM 2105 1388465 - 1388481 + r 71 -6.6 -4.09378 | overlap 1388463 TATTTCTCATTAGGA GCTTTC ATAAA GAAAGC TATTTTATCTTTTTC CLI_1322 1389189 - 1388449 - | hypothetical protein TERM 2106 1388736 - 1388746 + g 75 -4 -5.24989 | CTAATAATCCCTTAG TACT TAT AGTA TTTTTTGGTATATCA CLI_1323 1389583 - 1389729 + | hypothetical protein TERM 2107 1389746 - 1389705 - T 73 -7.5 -3.70043 | opp_overlap 1389708, overlap 1389697 1389703 1389711 GTTAATATATAAATA TTATAAGCACGAATTAATT AACT AATTAATTCGTGCTTGTTT TCTATTATTGAAAGT TERM 2108 1389708 - 1389743 + T 100 -15.8 -4.79752 | opp_overlap 1389697 1389705 1389703 1389711 AATATATAAATATTA TAAGCACGAATTAATT AACT AATTAATTCGTGCTTG TTTTCTATTATTGAA TERM 2109 1389740 - 1389711 - T 100 -15.3 -3.59627 | opp_overlap 1389708, overlap 1389705 1389703 ATATAAATATTATAA GCACGAATTAATT AACT AATTAATTCGTGC TTGTTTTCTATTATT CLI_1324 1390380 - 1389847 - | DNA-binding protein TERM 2110 1390506 - 1390486 - H 85 -6.3 -5.47218 | TGTTATTCAAAAAAA TCATCTTTT AAG AAAAAATGA TATAAAAAATTCATT TERM 2111 1390529 - 1390516 - H 72 -3.9 -5.43487 | AAATGATATAAAAAA TTCAT TTAT ATGAA AATAATAGAAATAAA CLI_1325 1390804 - 1391853 + | putative transcriptional regulator TERM 2112 1392008 - 1392035 + F 80 -6.4 -5.055 | TATGAAAAAGGTTAA GGGATACTGTTT TTGC AAATAGTGTTCC TTTTTTAGCACTTAA TERM 2113 1392068 - 1392091 + F 100 -10.4 -4.52589 | TATATAGAGATACTT TAGACGTTCA TAAA TGAGCGTCTA TTTTGTATGGAAGGC TERM 2114 1392451 - 1392464 + G 72 -5.3 -4.77173 | overlap 1392450 TTCTACTTATTATAT TCTTC TAAG GAAGA TTTATTTTGTGAAAC CLI_1326 1392283 - 1392870 + | TetR family transcriptional regulator CLI_1327 1392885 - 1393112 + | hypothetical protein CLI_1328 1393109 - 1393840 + | ABC transporter, ATP-binding protein TERM 2115 1394360 - 1394374 + G 79 -7.2 -4.41114 | opp_overlap 1394360 TGATAAGAAAATCAA CAATTG CTA CAATTG TTTCTTCTCTGATAA TERM 2116 1394374 - 1394360 - g 71 -7.2 -3.85542 | opp_overlap 1394360 TGATAAGAAAATCAA CAATTG CTA CAATTG TTTCTTCTCTGATAA CLI_1329 1393837 - 1394529 + | hypothetical protein TERM 2117 1394706 - 1394727 + F 72 -8.9 -2.62463 | overlap 1394705 1394708 AGCCCCATGGATATG TATCACTAT TGGG ATAGTGATA ATTGTAAATCATGGA CLI_1330 1394781 - 1395014 + | hypothetical protein TERM 2118 1395317 - 1395358 + T 100 -13.1 -3.5774 | opp_overlap 1395317 TTTCCACCACGGAAA GGCACCATCCTTAATCTCC TTAT GAAGACTAAAGATGGTGCC TTTAAGAAATTAGGT TERM 2119 1395358 - 1395317 - T 100 -19.7 -3.68351 | opp_overlap 1395317 TTTCCACCACGGAAA GGCACCATCCTTAATCTCC TTAT GAAGACTAAAGATGGTGCC TTTAAGAAATTAGGT CLI_1331 1396953 - 1395517 - | sodium:alanine symporter family protein TERM 2120 1396740 - 1396762 + g 70 -4.2 -4.93898 | opp_overlap 1396736 1396745, overlap 1396736 TTATACAGAAGGCTT GAAAAGAAGA AAC TCCTTTTTTC TTTTTATGCTCCTCT CLI_1332 1396983 - 1397126 + | hypothetical protein TERM 2121 1397160 - 1397139 - f 70 -6.1 -4.23434 | opp_overlap 1397139 1397140 TAAAATAGTGGAAAA TTTTTTATA AAAT TATAAAAAA TATATATAATATAAA TERM 2122 1397173 - 1397161 - f 73 -3.5 -5.4588 | opp_overlap 1397170, overlap 1397170 TAAAATTATAAAAAA TATAT ATA ATATA AAATATATTTTTACA TERM 2123 1397195 - 1397177 - f 76 -6.2 -4.77867 | opp_overlap 1397170 1397177, overlap 1397170 ATATATAATATAAAA TATATTTT TAC AAAATATA TTTGCATTAAAAATT TERM 2124 1397291 - 1397257 - f 90 -10.4 -3.39505 | opp_overlap 1397248 1397246 1397257 1397268, overlap 1397281 ATTTTATATTTATAA TATGTTTATATTTAAT AAT ATTAATTATAAACATA TTATAAAAAAAGTAA TERM 2125 1397257 - 1397291 + F 87 -10.4 -3.29144 | opp_overlap 1397257 1397281, overlap 1397248 1397246 1397268 ATTTTATATTTATAA TATGTTTATATTTAAT AAT ATTAATTATAAACATA TTATAAAAAAAGTAA TERM 2126 1397338 - 1397311 - f 88 -6.4 -5.62552 | overlap 1397312 AAAAAAAGTAAAAAA GTCCCATATTTT TATA AAAACATGGGAA ATAAATACAATCGTC TERM 2127 1397337 - 1397312 - f 93 -9.9 -3.92041 | overlap 1397311 AAAAAAGTAAAAAAG TCCCATATTTT TATA AAAACATGGGA AATAAATACAATCGT TERM 2128 1397579 - 1397569 - f 73 -2.6 -5.64274 | opp_overlap 1397569 TGATTTATAAAAAAA TATA ATA TATA CTAGTTTTGTTGGTA TERM 2129 1397738 - 1397761 + F 100 -11.2 -5.27769 | opp_overlap 1397738 1397742 TATTTAAAGTAAAAA GAAACACAAT CGTA ATTGTGTTTC TTTTTACTTTTTTAT TERM 2130 1397761 - 1397738 - f 100 -11.2 -5.00138 | opp_overlap 1397738, overlap 1397742 TATTTAAAGTAAAAA GAAACACAAT CGTA ATTGTGTTTC TTTTTACTTTTTTAT TERM 2131 1397757 - 1397742 - f 78 -6.2 -5.00388 | opp_overlap 1397738, overlap 1397738 TAAAGTAAAAAGAAA CACAAT CGTA ATTGTG TTTCTTTTTACTTTT TERM 2132 1398414 - 1398400 - g 75 -5.8 -4.73613 | opp_overlap 1398400 TGAGGATGAAGAAAA GATAAT ACA ATTATC TAAATTTAAAGCTTT CLI_1333 1398125 - 1398433 + | hypothetical protein TERM 2133 1398573 - 1398604 + F 100 -10.5 -5.85737 | opp_overlap 1398572 1398575 CATAATATAGTTAAG CATTTCATAAAAA CGAATA TTTTTATGAAATG TTTTTTTATTGATAT TERM 2134 1398913 - 1398937 + F 83 -7.2 -4.98522 | opp_overlap 1398913 CTCCATATGAAAAAA GAACTCCATT TTATT ACTGGAGTTC TTTTTGTATGGAATT TERM 2135 1398937 - 1398913 - f 87 -7.2 -5.21709 | opp_overlap 1398913 CTCCATATGAAAAAA GAACTCCATT TTATT ACTGGAGTTC TTTTTGTATGGAATT CLI_1334 1399095 - 1399298 + | putative DNA-binding protein TERM 2136 1399274 - 1399303 + F 85 -6 -5.49579 | opp_overlap 1399274 AAATATAAAAATAGA GAATATTATTTA CTTAGA TGAATAATATTC TTTTATTTTTTATAG CLI_1335 1399416 - 1399562 + | hypothetical protein TERM 2137 1399603 - 1399578 - f 80 -3.4 -5.95539 | gap 1, opp_overlap 1399582, overlap 1399582 TGCGAAATAAAAAAA TAAAGCCTAGC AGAAG GCTAGACT-TA TTCCAAGTTGCTAAA TERM 2138 1399600 - 1399582 - f 87 -6.7 -5.36181 | opp_overlap 1399582, overlap 1399578 AAATAAAAAAATAAA GCCTAGC AGAAG GCTAGAC TTATTCCAAGTTGCT CLI_1336 1400192 - 1400449 + | hypothetical protein TERM 2139 1400472 - 1400519 + F 100 -8.2 -5.9003 | gap 1, opp_overlap 1400472 AATTTACTAAAGCAA CATAAATAAAAA-CTCTAGAG GGTTAAG CTTTGGAGCTTTTTATTTATG TTTTTTTATTACTTT TERM 2140 1401435 - 1401422 - g 73 -3.9 -5.18355 | TGGAAAAAGTAAAAA TAACA TAGA TGTTA ATATTGAAGCTGGAG CLI_1337 1400733 - 1401479 + | putative lipoprotein CLI_1338 1401798 - 1402025 + | rubredoxin TERM 2141 1402015 - 1402067 + T 100 -28.5 -3.03771 | opp_overlap 1402015 1402019 1402028, overlap 1402019 1402028 CTATAGATGAAGCTA TAAATTTATAAAATAAGGAAGTTGC GAT GCAACTTCCTTATTTTATAAATTTA TATTCAGAACTATAG TERM 2142 1402067 - 1402015 - T 100 -28.5 -2.59686 | opp_overlap 1402015 1402019 1402028, overlap 1402019 1402028 CTATAGATGAAGCTA TAAATTTATAAAATAAGGAAGTTGC GAT GCAACTTCCTTATTTTATAAATTTA TATTCAGAACTATAG TERM 2143 1402019 - 1402063 + T 100 -24.9 -4.19177 | opp_overlap 1402015 1402019 1402028, overlap 1402015 1402028 AGATGAAGCTATAAA TTTATAAAATAAGGAAGTTGC GAT GCAACTTCCTTATTTTATAAA TTTATATTCAGAACT TERM 2144 1402063 - 1402019 - T 100 -24.9 -3.99228 | opp_overlap 1402019 1402015 1402028, overlap 1402015 1402028 AGATGAAGCTATAAA TTTATAAAATAAGGAAGTTGC GAT GCAACTTCCTTATTTTATAAA TTTATATTCAGAACT TERM 2145 1402028 - 1402054 + T 100 -16.8 -4.52803 | opp_overlap 1402019 1402015 1402028, overlap 1402019 1402015 TATAAATTTATAAAA TAAGGAAGTTGC GAT GCAACTTCCTTA TTTTATAAATTTATA TERM 2146 1402054 - 1402028 - T 100 -16.8 -4.52803 | opp_overlap 1402028 1402019 1402015, overlap 1402019 1402015 TATAAATTTATAAAA TAAGGAAGTTGC GAT GCAACTTCCTTA TTTTATAAATTTATA CLI_1339 1403517 - 1402057 - | putative glyceraldehyde-3-phosphate dehydrogenase, NADP-dependent CLI_1340 1404498 - 1403557 - | putative thioredoxin reductase TERM 2147 1404516 - 1404530 + H 72 -8.6 -3.21466 | overlap 1404513 AAAATCACCCCTTAT TACCCT TAT AGGGTA TATATTAATTATACT TERM 2148 1404784 - 1404770 - H 70 -4.4 -5.00895 | opp_overlap 1404770 TTTATTATAGAAAAA TTTATT ATC AATAAA TTTAATAAAATTTCA TERM 2149 1405167 - 1405197 + H 100 -15 -5.61596 | opp_overlap 1405167 1405169 1405171 1405173 TCTCAGGTTAAGATA CAGAGATAAAAGTT ATG GACTTTTATCTCTG TTTTTTTGTGCAAAT TERM 2150 1405197 - 1405167 - H 100 -14.3 -3.08813 | opp_overlap 1405167, overlap 1405169 1405171 1405173 TCTCAGGTTAAGATA CAGAGATAAAAGT TATGG ACTTTTATCTCTG TTTTTTTGTGCAAAT TERM 2151 1405195 - 1405169 - H 87 -11.1 -3.10245 | opp_overlap 1405167, overlap 1405167 1405171 1405173 TCAGGTTAAGATACA GAGATAAAAGT TATGG ACTTTTATCTC TGTTTTTTTGTGCAA TERM 2152 1405245 - 1405218 - H 72 -3.7 -5.27335 | opp_overlap 1405212, overlap 1405212 1405219 TTGTGCAAATAAAAA CTTTATAATTT ACTAAG AAATTATAAAA ATAATGGACAGGGTG grdX 1405270 - 1405647 + | GrdX protein TERM 2153 1405670 - 1405648 - f 72 -8 -3.5782 | opp_overlap 1405623 1405647 1405648 AATGCATTAAATTAA TTTTATATAA GAT TTATATAAAA ATTGCTAGAATCATT TERM 2154 1405921 - 1405907 - g 70 -5 -4.57755 | AGCCAGGAGATAAAA CTAGAA TTA TTCCAG TAAAAGATGTAATAG grdE 1405738 - 1407024 + | glycine reductase complex component B, alpha and beta subunits TERM 2155 1407306 - 1407316 + G 74 -6.8 -4.25104 | GCGGATTTGTTTATA GCAG GAC CTGC TTTTAATGCCGGAAG grdB 1407057 - 1408358 + | glycine reductase complex component B, gamma subunit, selenocysteine-containing trxB 1408523 - 1409464 + | thioredoxin-disulfide reductase CLI_1345 1409498 - 1409818 + | thioredoxin family protein TERM 2156 1410160 - 1410144 - g 71 -8 -3.40299 | GCAGCAGAGGGAGAA GCAGCA GGTCT TGCTGC GGAGACAGTTACTAA grdA 1409904 - 1410380 + | glycine/sarcosine/betaine reductase complex protein A TERM 2157 1410452 - 1410400 - f 77 -7.8 -4.17516 | gap 1, opp_overlap 1410401 1410402 1410404 1410412, overlap 1410402 1410405 GGGAAAGTAGATAAA CAGAGTTCTTGGCTTCAGGGGGAGT TTTT ACTCCCGCTAAAGCTTAGAAATC-G TTATCCAAGGACATA TERM 2158 1410402 - 1410451 + F 85 -11.5 -2.57211 | opp_overlap 1410400 1410402 1410405, overlap 1410401 1410404 1410412 GAAAGTAGATAAACA GAGTTCTTGGCTTCAGGGGGAGT TTTT ACTCCCGCTAAAGCTTAGAAATC GTTATCCAAGGACAT TERM 2159 1410451 - 1410402 - f 95 -11.5 -3.67724 | opp_overlap 1410402 1410401 1410404 1410412, overlap 1410400 1410405 GAAAGTAGATAAACA GAGTTCTTGGCTTCAGGGGGAGT TTTT ACTCCCGCTAAAGCTTAGAAATC GTTATCCAAGGACAT TERM 2160 1410448 - 1410405 - f 86 -11.8 -2.62896 | opp_overlap 1410404 1410402 1410401 1410412, overlap 1410402 1410400 AGTAGATAAACAGAG TTCTTGGCTTCAGGGGGAGT TTTT ACTCCCGCTAAAGCTTAGAA ATCGTTATCCAAGGA TERM 2161 1410586 - 1410545 - f 100 -12.5 -4.64157 | opp_overlap 1410545, overlap 1410549 1410577 TAAAGAATTATAAAA TTAAGGAGGCTGTACTATA GGTT TATAATTCAGCCTCCTAAA TATTAGGGGGGAAAA TERM 2162 1410545 - 1410586 + F 85 -10.3 -3.01712 | opp_overlap 1410545 1410549 1410577 TAAAGAATTATAAAA TTAAGGAGGCTGTACTATA GGTT TATAATTCAGCCTCCTAAA TATTAGGGGGGAAAA TERM 2163 1410582 - 1410549 - f 100 -13.3 -3.78909 | opp_overlap 1410545, overlap 1410545 1410577 GAATTATAAAATTAA GGAGGCTGTACTATA GGTT TATAATTCAGCCTCC TAAATATTAGGGGGG TERM 2164 1411409 - 1411419 + G 71 -6.8 -3.93288 | opp_overlap 1411395 1411409 AGCCATTCTCTAATA GCTG CTT CAGC TTTAGTTCAATCCGG grdC 1410605 - 1412143 + | glycine reductase complex component C, beta subunit grdD 1412159 - 1413325 + | glycine reductase complex component C, alpha subunit CLI_1349 1413752 - 1414363 + | 3-methyladenine DNA glycosylase TERM 2165 1414575 - 1414548 - g 82 -8 -4.42639 | opp_overlap 1414548 1414552 1414553, overlap 1414534 1414553 ATATTTTAATGAAAA TAAAACTTTATT TTGT AATAAAGCTTTA TATGTGCTTATTAAT TERM 2166 1414570 - 1414553 - g 81 -5.7 -5.18643 | opp_overlap 1414553 1414552 1414548, overlap 1414548 TTAATGAAAATAAAA CTTTATT TTGT AATAAAG CTTTATATGTGCTTA TERM 2167 1415167 - 1415149 - g 72 -4 -5.06816 | AGTTTGCAAGAAAAA TATAAACA AAA TATTTATA CTATTAGAAAAAAAG TERM 2168 1415887 - 1415874 - g 81 -2.5 -5.76949 | TATTTTGAAAAAAAA TAAAA AATG TTTTA ATGAAATAAAAATTA TERM 2169 1416153 - 1416138 - g 74 -3.4 -5.4387 | opp_overlap 1416138 ATATAAAGGAAAAAA TATAAA AAAA TTTATA TGCTATTCTTATTTT CLI_1350 1414429 - 1416654 + | restriction endonuclease family protein TERM 2170 1416725 - 1416766 + T 100 -12.1 -5.39721 | opp_overlap 1416724 1416725 ATAAATTAAAAAACG TTAATTTTGAATAAAGTAA TATG TTATTTTGTTCAAAATTAA TTTTTTGTCTAATAA CLI_1351 1417025 - 1416906 - | hypothetical protein mtnK 1417090 - 1418301 + | methylthioribose kinase mtnA 1418441 - 1419490 + | translation initiation factor IF-2B subunit alpha CLI_1354 1419502 - 1419624 + | hypothetical protein CLI_1355 1419641 - 1420288 + | aldolase TERM 2171 1420451 - 1420441 - g 76 -2.6 -5.56263 | ATTATAAAATAAAAA TATT AGG AATA GGTGGGAAATATGAA CLI_1356 1420332 - 1420472 + | hypothetical protein CLI_1357 1420462 - 1421256 + | DeoR family transcriptional regulator TERM 2172 1421407 - 1421465 + F 100 -20.2 -2.84053 | opp_overlap 1421408 1421416, overlap 1421416 GATTAATTATCTAAA AGTAAGAAAGAATAATACTAAGTTTTAA ATT TTTAGACTTAGTATTATTCTTTCTTACA ATTTAAATCCTTTAA TERM 2173 1421464 - 1421408 - f 100 -21.5 -4.24294 | opp_overlap 1421407 1421416, overlap 1421416 ATTAATTATCTAAAA GTAAGAAAGAATAATACTAAGTTTTAA ATT TTTAGACTTAGTATTATTCTTTCTTAC AATTTAAATCCTTTA TERM 2174 1421456 - 1421416 - f 100 -11.5 -4.45765 | opp_overlap 1421407 1421416, overlap 1421408 TCTAAAAGTAAGAAA GAATAATACTAAGTTTTAA ATT TTTAGACTTAGTATTATTC TTTCTTACAATTTAA TERM 2175 1421416 - 1421456 + F 100 -13.7 -4.23104 | opp_overlap 1421416 1421408, overlap 1421407 TCTAAAAGTAAGAAA GAATAATACTAAGTTTTAA ATT TTTAGACTTAGTATTATTC TTTCTTACAATTTAA CLI_1358 1421565 - 1421924 + | hypothetical protein TERM 2176 1422098 - 1422136 + T 85 -8.2 -4.70659 | overlap 1422099 TTATTTTGCGGATCC ATGACCAGTTACCTAATG TCT TGTGAGGTGACTGGTCAA TTTTTAAATATGCCA TERM 2177 1422099 - 1422135 + T 95 -11.7 -3.41913 | overlap 1422098 TATTTTGCGGATCCA TGACCAGTTACCTAATG TCT TGTGAGGTGACTGGTCA ATTTTTAAATATGCC CLI_1359 1423153 - 1422278 - | cation efflux family protein TERM 2178 1422343 - 1422353 + g 78 -6.8 -4.5477 | TGCTTGCTTCTATTT GGTC ATG GACC TTTTCTGCTATGTTA CLI_1360 1423402 - 1424130 + | hypothetical protein CLI_1361 1424292 - 1424657 + | hypothetical protein TERM 2179 1424971 - 1424986 + G 79 -5.4 -5.28983 | TAGCTACAGCTTTAG GGGGAA CATT TTCCTC TTTTTCTATTTTGGA CLI_1362 1424799 - 1425137 + | hypothetical protein CLI_1363 1425134 - 1425607 + | hypothetical protein CLI_1364 1425990 - 1426376 + | hypothetical protein CLI_1365 1426424 - 1427131 + | hypothetical protein CLI_1366 1427372 - 1427202 - | hypothetical protein TERM 2180 1427625 - 1427588 - R 100 -10.3 -4.82518 | AAAAGAGTAATAAAA TTTTAGTATATTAAAAA ATAA TTATTAATATACTAAAA TAAAGATCTATTAAA TERM 2181 1427648 - 1427685 + r 79 -7.2 -4.63107 | opp_overlap 1427648, overlap 1427643 CTATTAAATTAAAAA GCTATGAATTTAGG TCATTATATT CCTAAATCCATAGC TTTTACTTATTTAAT TERM 2182 1427685 - 1427648 - R 100 -9.4 -5.01811 | opp_overlap 1427648 1427643 CTATTAAATTAAAAA GCTATGAATTTAGG TCATTATATT CCTAAATCCATAGC TTTTACTTATTTAAT CLI_1367 1428007 - 1427753 - | hypothetical protein TERM 2183 1427831 - 1427843 + g 70 -5.5 -4.33153 | AGCAGCTGTTGATGT TGCCT GAG GGGCA TTTGTTGATGTTGCC TERM 2184 1427855 - 1427867 + g 70 -5.5 -4.33755 | GGCATTTGTTGATGT TGCCT GAG GGGCA TTTGTTGATGTTGCT TERM 2185 1428581 - 1428551 - H 71 -7 -3.9749 | opp_overlap 1428551 ATCTATAATATTAAA GGTTAAGAGATTTA TAA TAAGTCTTTTAACC TTTTTTAATTGCAAT TERM 2186 1428551 - 1428581 + H 100 -11.4 -5.27477 | opp_overlap 1428551 ATCTATAATATTAAA GGTTAAGAGATTTA TAA TAAGTCTTTTAACC TTTTTTAATTGCAAT CLI_1368 1429196 - 1429492 + | hypothetical protein CLI_1369 1429520 - 1429816 + | hypothetical protein CLI_1370 1429868 - 1432165 + | xanthine dehydrogenase subunit XdhA CLI_1371 1432179 - 1433063 + | xanthine dehydrogenase subunit XdhB CLI_1372 1433095 - 1433568 + | xanthine dehydrogenase family protein, iron-sulfur binding subunit CLI_1373 1433684 - 1434157 + | guanine deaminase TERM 2187 1434170 - 1434224 + F 70 -3.9 -5.25893 | gap 1, opp_overlap 1434168 1434180, overlap 1434180 1434222 TAAAAGTAATAAGTT ATAAAATAA-ATCCAGTAGCAAGCAT TAAG AAGCTTTCTATTGGATTTTGTTTTAG TTTTTTACTATGTAT TERM 2188 1434180 - 1434213 + F 93 -7.5 -5.24291 | opp_overlap 1434180, overlap 1434170 AAGTTATAAAATAAA TCCAGTAGCAAGCAT TAAG AAGCTTTCTATTGGA TTTTGTTTTAGTTTT TERM 2189 1434213 - 1434180 - f 73 -5.3 -4.79683 | opp_overlap 1434180 1434170 AAGTTATAAAATAAA TCCAGTAGCAAGCAT TAAG AAGCTTTCTATTGGA TTTTGTTTTAGTTTT TERM 2190 1434473 - 1434499 + F 72 -3.9 -5.4505 | gap 1 TTATATATATGTATG TAAGGGTAG-TA AGTA TATCTATCCTTA TTTTTTATTAAAAAA TERM 2191 1434586 - 1434576 - g 74 -5.4 -4.91109 | GTTTTAGCAGAAAAA CCTA GTG TAGG AAGAGATTTAGCTAA TERM 2192 1435675 - 1435665 - g 79 -5.4 -5.24796 | overlap 1435671 CCTACAGAAGAAAAA CCTA AAT TAGG TAACCTAAGTGGTGA TERM 2193 1435683 - 1435671 - g 70 -6.3 -4.05495 | overlap 1435665 GAAGAAAAACCTAAA TTAGG TAA CCTAA GTGGTGAGGAAAGAA TERM 2194 1436336 - 1436318 - g 71 -9 -2.75596 | overlap 1436315 TAAAATGAGAGACTA TTCTACAA AAC TTGTAGAA GATGTAAAAAATAGC TERM 2195 1436406 - 1436391 - g 72 -4 -5.055 | gap 1 TTAACTGGTAAAAAA TGTCCAC AAT GTGG-CA AATATATGTTAGAAG topB 1434546 - 1436741 + | DNA topoisomerase III TERM 2196 1436999 - 1436966 - f 73 -9.1 -2.93073 | gap 1, opp_overlap 1436966, overlap 1436963 1436968 TGTCTTGAATAATGA GACT-CATGTATAGTT TTT AACTATGCATGGAGTC TTTTTTATTGTATAA TERM 2197 1436966 - 1436999 + F 100 -11.3 -5.60689 | gap 1, opp_overlap 1436963 1436966 1436968 TGTCTTGAATAATGA GACT-CATGTATAGTT TTT AACTATGCATGGAGTC TTTTTTATTGTATAA CLI_1375 1437194 - 1437799 + | hypothetical protein TERM 2198 1437822 - 1437812 - f 70 -2.6 -5.59655 | TAAATCAACAAAAAA TAAT ATG ATTA AATAATTCTTAGTTA CLI_1376 1437865 - 1438101 + | hypothetical protein CLI_1377 1438309 - 1438178 - | hypothetical protein TERM 2199 1439084 - 1439063 - g 72 -4.5 -4.89393 | TAAATTGCATAAAAA CATAGTTAT AAAA ATACCTATG TGCGAAGAAGGACTA CLI_1378 1438827 - 1439480 + | putative translaldolase TERM 2200 1439608 - 1439645 + F 74 -8.2 -3.43492 | opp_overlap 1439607 1439608 1439611, overlap 1439607 1439611 GTAGTTTAACACAAT TAATTTTTAATAATAT GTAAAA ATATTATTAAAGATTA TTATAATAGATGTAG CLI_1379 1439879 - 1441543 + | RNA-metabolising metallo-beta-lactamase TERM 2201 1441597 - 1441565 - f 100 -10.8 -5.54403 | opp_overlap 1441565 AAAAAATAATAAAAA GCTAGAACTTTAAT GTTAA ATTATAGTTCTAGC TTTTTGTTATATATT TERM 2202 1441565 - 1441597 + F 100 -10.8 -5.28561 | opp_overlap 1441565 AAAAAATAATAAAAA GCTAGAACTTTAAT GTTAA ATTATAGTTCTAGC TTTTTGTTATATATT CLI_1380 1441848 - 1443200 + | sodium:alanine symporter family protein TERM 2203 1443302 - 1443350 + F 75 -5.6 -4.99035 | gap 1, opp_overlap 1443320, overlap 1443306 ATATATAATAAGCAT G-GAGGGATGTGTTACTAACATA AGAT TATGTTAATAGTACATCCTTTGC TTTTTATATAGATAA TERM 2204 1443306 - 1443345 + F 100 -11 -4.40526 | opp_overlap 1443320, overlap 1443302 ATAATAAGCATGGAG GGATGTGTTACTAACATA AGAT TATGTTAATAGTACATCC TTTGCTTTTTATATA TERM 2205 1443432 - 1443404 - f 85 -9.9 -3.16556 | opp_overlap 1443404 1443407, overlap 1443407 1443419 1443423 AAATAGGATATTCAA TAACATAATATTA AGC CAATATTATGTTA TAATATATGGAAAAT TERM 2206 1443404 - 1443432 + F 75 -9.2 -2.6927 | opp_overlap 1443404 1443407 1443419 1443423, overlap 1443407 AAATAGGATATTCAA TAACATAATATT AAGCC AATATTATGTTA TAATATATGGAAAAT TERM 2207 1443429 - 1443407 - f 70 -7.2 -3.71487 | opp_overlap 1443404 1443407, overlap 1443404 1443419 1443423 TAGGATATTCAATAA CATAATATTA AGC CAATATTATG TTATAATATATGGAA CLI_1381 1443515 - 1444360 + | GGDEF domain-containing protein TERM 2208 1445293 - 1445283 - g 70 -5.4 -4.58585 | CACCCAAATAATAAA GAAG AAG CTTC AGGGGAGGAACATGA TERM 2209 1445675 - 1445687 + G 71 -2 -5.39221 | TATGGTAAGGGGATA TACT GTCGG AGTA TTTTTTCATTCTTAT CLI_1382 1444353 - 1446005 + | STE-like transcription factor domain-containing protein CLI_1383 1446011 - 1447273 + | glycosyl transferase, group 2 family protein TERM 2210 1447452 - 1447438 - g 71 -5.8 -4.41348 | GCGGCTCCAAATAAA TCTAAA AAT TTTAGA GTAGAAAAAGATATG TERM 2211 1448389 - 1448369 - g 78 -9.9 -3.1875 | GATATGGCAATGTAA GTTTAAAAG GAC CTTTTAAAC AGGAGGCAACCTTTA CLI_1384 1447345 - 1449441 + | cellulose synthase domain-containing protein TERM 2212 1449495 - 1449526 + F 95 -12.4 -3.62046 | TAAACAGAGTTCTTG GTTTTAGAGGGAGT TTTT ACTCCCACTAAAGC TTATTAACAGAATGC TERM 2213 1449596 - 1449609 + F 86 -9.5 -3.88442 | GAAATGGTTATCCAG GGGCG TAAC CGCCC TTTACTCCTATTTTG TERM 2214 1450905 - 1450878 - g 85 -11.6 -2.62263 | opp_overlap 1450880 1450883, overlap 1450880 1450883 ATTTTTGCTATAGGA GATAATAGTTTT GATA AAAACTATTATC CTTCAGAAGAAACTA CLI_1385 1449858 - 1450952 + | hypothetical protein CLI_1386 1451180 - 1451344 + | hypothetical protein TERM 2215 1451362 - 1451385 + F 100 -14 -5.56264 | opp_overlap 1451362 GAATTCGTAATTAAA CCTGTAAGAG GTTA CTCTTACAGG TTTTTTGTGTTTCAG TERM 2216 1451385 - 1451362 - f 100 -14 -3.91798 | opp_overlap 1451362 GAATTCGTAATTAAA CCTGTAAGAG GTTA CTCTTACAGG TTTTTTGTGTTTCAG TERM 2217 1451590 - 1451570 - f 75 -8.5 -3.48105 | overlap 1451563 1451568 TGAATTTATTAAATA TCTATTTAA AAA TTAAATAGA ACTAATTACTTTATT TERM 2218 1452157 - 1452176 + G 73 -5.8 -4.65446 | TACCTAAAAAGCTAG TGTTATTG AATA CAATAGCA TTTTCTATATCTACT CLI_1387 1451679 - 1452482 + | hypothetical protein TERM 2219 1452545 - 1452582 + F 100 -10.9 -5.74086 | opp_overlap 1452544 1452546, overlap 1452546 ATATAATTTCAAGAT AGTGTATCAAAATAGAT TTAA ATTTATTTTGATACACA TTTTTTATTTAATTT TERM 2220 1452581 - 1452546 - f 90 -12.2 -3.11326 | opp_overlap 1452545 1452546, overlap 1452544 TATAATTTCAAGATA GTGTATCAAAATAGAT TTAA ATTTATTTTGATACAC ATTTTTTATTTAATT TERM 2221 1452546 - 1452581 + F 100 -14.4 -4.00791 | opp_overlap 1452546 1452544, overlap 1452545 TATAATTTCAAGATA GTGTATCAAAATAGAT TTAA ATTTATTTTGATACAC ATTTTTTATTTAATT TERM 2222 1452663 - 1452645 - f 100 -14.6 -3.18366 | overlap 1452643 1452641 GTTTTAATTAAGATA CACCCCCA GGG TGGGGGTG GGTGAACAAGGTGAA CLI_1388 1452759 - 1453025 + | hypothetical protein TERM 2223 1455132 - 1455120 - g 74 -3.4 -5.41746 | AACTGGGTAAAAAAA CTTC AACAA GAAG GAAAAATTGTAGCTA CLI_1389 1453062 - 1455497 + | copper-translocating P-type ATPase copZ 1455620 - 1455835 + | copper chaperone CopZ TERM 2224 1455901 - 1455867 - f 71 -5.8 -4.63527 | opp_overlap 1455867 TTATGAGTTTAAAAA GGGTGTTTCAAAAT TAAATCT ATTTTGAGGCACCC TTTTTACATTTTGTA TERM 2225 1455867 - 1455901 + F 100 -10.2 -4.89729 | opp_overlap 1455867 TTATGAGTTTAAAAA GGGTGTTTCAAAAT TAAATCT ATTTTGAGGCACCC TTTTTACATTTTGTA CLI_1391 1456268 - 1458649 + | cation-transporting ATPase, P-type TERM 2226 1458705 - 1458743 + F 100 -9.1 -5.04325 | opp_overlap 1458703 1458693 1458707, overlap 1458693 1458707 TAATATGTATTAAGA AAGGTTTTCTCAAAATA TATTT TATTTTGAGAAGGCCTA TTTTTATGCTTTAAG TERM 2227 1458707 - 1458741 + F 100 -11.7 -4.13732 | opp_overlap 1458703 1458693 1458707, overlap 1458693 1458705 ATATGTATTAAGAAA GGTTTTCTCAAAATA TATTT TATTTTGAGAAGGCC TATTTTTATGCTTTA TERM 2228 1458741 - 1458707 - f 75 -7.3 -4.26202 | opp_overlap 1458693 1458707 1458705, overlap 1458703 1458693 ATATGTATTAAGAAA GGTTTTCTCAAAATA TATTT TATTTTGAGAAGGCC TATTTTTATGCTTTA TERM 2229 1458815 - 1458846 + F 89 -10.2 -3.62522 | opp_overlap 1458824 TAAACAGAGTTCTTG GCTTGAGAAGGAGT TTTT ACTCCATCTGAAGC TTATTAACAGAATTC TERM 2230 1458851 - 1458890 + F 73 -8.8 -2.90615 | gap 1, opp_overlap 1458859, overlap 1458855 1458856 1458858 CCATCTGAAGCTTAT TAACAGAATTCTTAGGAGT TTT ACTCCTTAGAAGTC-GTTA TCCTTTAGGGGAAAT TERM 2231 1458856 - 1458886 + F 79 -9.8 -2.75769 | opp_overlap 1458859, overlap 1458855 1458851 1458858 TGAAGCTTATTAACA GAATTCTTAGGAGT TTT ACTCCTTAGAAGTC GTTATCCTTTAGGGG TERM 2232 1458883 - 1458859 - f 90 -10.1 -3.71552 | opp_overlap 1458858 1458856 1458855 1458851 AGCTTATTAACAGAA TTCTTAGGAGT TTT ACTCCTTAGAA GTCGTTATCCTTTAG CLI_1392 1459128 - 1460846 + | ABC transporter, ATP-binding protein/permease protein TERM 2233 1460969 - 1460996 + F 83 -3.6 -5.86609 | overlap 1460935 1460972 TTTGTAATTTATCTT GAACAATAAAAT TGGA GTTTTATTGTTA TTTTTATTTTTTTGA TERM 2234 1460972 - 1460993 + F 73 -5.3 -4.8855 | overlap 1460935 1460969 GTAATTTATCTTGAA CAATAAAAT TGGA GTTTTATTG TTATTTTTATTTTTT TERM 2235 1461066 - 1461030 - f 89 -9.2 -4.29953 | gap 1, opp_overlap 1461037 1461038 1461040, overlap 1461027 1461038 AAATTACTAAAACAA TATACAAA-TATGTTAT ATAT ATAACATAATTTGTATA CAATTAACAACTAAA TERM 2236 1461057 - 1461038 - f 73 -6.6 -4.31833 | opp_overlap 1461038 1461037 1461040, overlap 1461030 1461027 AAAACAATATACAAA TATGTTAT ATAT ATAACATA ATTTGTATACAATTA CLI_1393 1461185 - 1461979 + | CAAX amino terminal protease family protein CLI_1394 1462143 - 1462499 + | dinitrogenase iron-molybdenum cofactor family protein TERM 2237 1462503 - 1462533 + F 100 -15 -5.99154 | opp_overlap 1462503 1462508 CATCATCATTAAAAA TAAAAGGGAAGTAC CTA GTACTTTCCTTTTA TTTTTTTATTTAATA TERM 2238 1462533 - 1462503 - f 100 -12.8 -4.78107 | opp_overlap 1462503, overlap 1462508 CATCATCATTAAAAA TAAAAGGGAAGTAC CTA GTACTTTCCTTTTA TTTTTTTATTTAATA TERM 2239 1462528 - 1462508 - f 100 -8.3 -5.3104 | opp_overlap 1462503, overlap 1462503 TCATTAAAAATAAAA GGGAAGTAC CTA GTACTTTCC TTTTATTTTTTTATT TERM 2240 1463351 - 1463339 - g 74 -6.3 -4.45945 | ATTTATTAATGAAAA TACTG TAG CAGTA AATGTAAGAAGGATA CLI_1395 1462770 - 1463462 + | DNA-binding response regulator TERM 2241 1463587 - 1463577 - g 72 -4 -5.03227 | ATATGATAAATAAAA TTCA AAA TGAA GAGATTAAAAACTAC CLI_1396 1463459 - 1464706 + | sensor histidine kinase CLI_1397 1464919 - 1465584 + | ABC transporter, ATP-binding protein CLI_1398 1465596 - 1467944 + | ABC transporter, permease protein TERM 2242 1468031 - 1468045 + F 86 -4.4 -5.9003 | opp_overlap 1468022, overlap 1468042 GAATAATATTTCTTT TAAAAA TAC TTTTTA TTTTTTTATTAATTT TERM 2243 1469005 - 1468989 - g 79 -8.1 -3.89505 | AAAAATCCAGAAGAA GAAATAG TAG CTATTTC TCATGGAGATTCAGA CLI_1399 1468293 - 1469186 + | DegV family protein TERM 2244 1469225 - 1469184 - T 100 -14.9 -3.10297 | gap 1, opp_overlap 1469192 1469195, overlap 1469187 1469192 ATTATAGATATAAAT TAATAAAATAAGGAAAGTGC GAC GCACTTTCCTCATTTT-TTA TCTCTGGCCTTTACC TERM 2245 1469223 - 1469187 - T 100 -14.7 -3.68084 | opp_overlap 1469192 1469195, overlap 1469184 1469192 ATAGATATAAATTAA TAAAATAAGGAAAGTGC GAC GCACTTTCCTCATTTTT TATCTCTGGCCTTTA TERM 2246 1469218 - 1469192 - T 100 -14.6 -4.87052 | opp_overlap 1469192 1469195, overlap 1469187 1469184 TATAAATTAATAAAA TAAGGAAAGTGC GAC GCACTTTCCTCA TTTTTTATCTCTGGC TERM 2247 1469192 - 1469218 + T 100 -12.4 -5.4251 | opp_overlap 1469192 1469187 1469184, overlap 1469195 TATAAATTAATAAAA TAAGGAAAGTGC GAC GCACTTTCCTCA TTTTTTATCTCTGGC TERM 2248 1469195 - 1469215 + T 100 -14.1 -3.48985 | opp_overlap 1469192 1469187 1469184, overlap 1469192 AAATTAATAAAATAA GGAAAGTGC GAC GCACTTTCC TCATTTTTTATCTCT CLI_1400 1469687 - 1469223 - | 5-nitroimidazole antibiotic resistance protein CLI_1401 1469963 - 1470430 + | hypothetical protein TERM 2249 1470477 - 1470456 - f 73 -7.3 -4.1899 | opp_overlap 1470456 TTAGTGTAGGTAAAA TAGCTTGGC AAAT GCTAAGCTA TTTTTTTACAATAGA TERM 2250 1470456 - 1470477 + F 100 -9.5 -5.44119 | opp_overlap 1470456 TTAGTGTAGGTAAAA TAGCTTGGC AAAT GCTAAGCTA TTTTTTTACAATAGA TERM 2251 1470575 - 1470594 + F 70 -4.4 -5.06451 | opp_overlap 1470569 TTTGAAAGATTTTAT TAAAAAAC CTTT GTTTTTTG TTTTTTGGAATAATA CLI_1402 1470640 - 1470870 + | hypothetical protein CLI_1403 1470996 - 1471178 + | hypothetical protein CLI_1404 1471192 - 1471437 + | hypothetical protein TERM 2252 1471445 - 1471472 + F 72 -4.9 -4.9445 | TAAATTAAAAACAAA GAGGTGGCTTT TTAAAT GAAGCTATCTC TTTTTAATTACTTGT TERM 2253 1471568 - 1471543 - f 72 -7.7 -3.52481 | opp_overlap 1471549, overlap 1471544 1471546 1471549 AAATACGGTATATAA TTACAATGCAA TATA TTGCATTGTAT GGAAATTTTAAGGGG TERM 2254 1471567 - 1471544 - f 83 -11.2 -2.70766 | opp_overlap 1471549, overlap 1471543 1471546 1471549 AATACGGTATATAAT TACAATGCAA TATA TTGCATTGTA TGGAAATTTTAAGGG TERM 2255 1471565 - 1471546 - f 76 -9.4 -2.89298 | opp_overlap 1471549, overlap 1471544 1471543 1471549 TACGGTATATAATTA CAATGCAA TATA TTGCATTG TATGGAAATTTTAAG CLI_1405 1471595 - 1472200 + | putative lipoprotein TERM 2256 1472214 - 1472249 + F 83 -9.3 -3.60296 | gap 1, opp_overlap 1472214 1472220, overlap 1472220 AATATTAAACATAAA TGAAAA-CTCTAAGGG GTTAG CCTTTAGAGTTTTTCA TTTGACGTCAAAATA TERM 2257 1472249 - 1472214 - f 77 -7.1 -4.39414 | gap 1, opp_overlap 1472214 1472220, overlap 1472220 AATATTAAACATAAA TGAA-AACTCTAAGGG GTTAG CCTTTAGAGTTTTTCA TTTGACGTCAAAATA TERM 2258 1472242 - 1472220 - f 74 -6.3 -4.68919 | opp_overlap 1472214 1472220, overlap 1472214 AAACATAAATGAAAA CTCTAAGGG GTTAG CCTTTAGAG TTTTTCATTTGACGT TERM 2259 1472220 - 1472242 + F 91 -8.5 -4.99134 | opp_overlap 1472220 1472214, overlap 1472214 AAACATAAATGAAAA CTCTAAGGG GTTAG CCTTTAGAG TTTTTCATTTGACGT CLI_1406 1472652 - 1472867 + | hypothetical protein CLI_1407 1472905 - 1473333 + | HIT family protein TERM 2260 1473436 - 1473477 + T 100 -11.9 -4.98672 | opp_overlap 1473442, overlap 1473442 GTATATTTTAAATTT TAAAAAGACCTATTTAGTT ATTT AACTAAATAGGTCTTTAAA TTTTATATTTTTACA TERM 2261 1473471 - 1473442 - T 100 -15.3 -4.70879 | opp_overlap 1473436 1473442 TTTAAATTTTAAAAA GACCTATTTAGTT ATTT AACTAAATAGGTC TTTAAATTTTATATT TERM 2262 1473442 - 1473471 + T 100 -15.3 -3.99216 | opp_overlap 1473442, overlap 1473436 TTTAAATTTTAAAAA GACCTATTTAGTT ATTT AACTAAATAGGTC TTTAAATTTTATATT CLI_1408 1473862 - 1473488 - | hypothetical protein TERM 2263 1473647 - 1473623 - G 82 -8 -4.38927 | overlap 1473645 GGCTGATATAACAAA TCCTTTTAGT CCTCT ACCAAAAGGA GAAGCATCTACTCCC TERM 2264 1473661 - 1473645 - G 72 -6.5 -4.25283 | overlap 1473623 AGTCCTCTACCAAAA GGAGAAG CAT CTACTCC CATAAATTTTTCTAC TERM 2265 1473953 - 1473912 - H 90 -10.7 -3.3095 | opp_overlap 1473912 1473910 1473924 1473944, overlap 1473924 1473952 ATATATTTTGTACAA TATTTTAAAAAATATTATA AATA TCTAATATTTTTTAAAATA AAATGTTTAAAATTT CLI_1409 1474153 - 1474911 + | type IV leader peptidase family protein TERM 2266 1475234 - 1475276 + F 88 -6.5 -5.48213 | opp_overlap 1475232 ATTAAATTTAAAATA TACCTTATAGAGTAGGT AATAAAAAA GTCTACTCTATGGGGTA TTTTTATTTTAAATA CLI_1410 1475511 - 1476638 + | hypothetical protein trkA 1477426 - 1478793 + | potassium transporter peripheral membrane component trkH 1478790 - 1480235 + | Trk system potassium uptake protein TrkH CLI_1413 1480638 - 1480772 + | hypothetical protein CLI_1414 1480753 - 1483320 + | helicase, UvrD/REP/exonuclease family protein TERM 2267 1483381 - 1483336 - T 100 -10.9 -3.87116 | gap 1, opp_overlap 1483336, overlap 1483330 TAAATATAAGTTAAA GCCACACTAAG-AAAAATAT AATTTAA ATATTTTTACTTAATGTGGC TTTCTTATAGAATAA TERM 2268 1483336 - 1483381 + T 84 -8.7 -4.32177 | gap 1, opp_overlap 1483330 1483336 TAAATATAAGTTAAA GCCACACTAAG-AAAAATAT AATTTAA ATATTTTTACTTAATGTGGC TTTCTTATAGAATAA CLI_1415 1485283 - 1484153 - | hypothetical protein CLI_1416 1485672 - 1485298 - | GntR family transcriptional regulator TERM 2269 1485701 - 1485729 + r 100 -11.3 -4.11394 | opp_overlap 1485701 1485699 1485679 1485697 1485676 1485703, overlap 1485690 1485688 1485697 1485703 ATGTTATATAATATA TATCTGTTATATA TAT TATATAACAGATG TTTTAAAAATAAAAT TERM 2270 1485729 - 1485701 - R 75 -9.1 -3.22886 | opp_overlap 1485690 1485688 1485697 1485701 1485703, overlap 1485699 1485679 1485697 1485676 1485703 ATGTTATATAATATA TATCTGTTATATA TAT TATATAACAGATG TTTTAAAAATAAAAT TERM 2271 1485727 - 1485703 - R 93 -11.7 -3.17443 | opp_overlap 1485688 1485697 1485703 1485701, overlap 1485701 1485699 1485679 1485697 1485676 GTTATATAATATATA TCTGTTATATA TAT TATATAACAGA TGTTTTAAAAATAAA TERM 2272 1485703 - 1485727 + r 95 -11.7 -3.65542 | opp_overlap 1485701 1485699 1485679 1485697 1485676 1485703, overlap 1485688 1485697 1485701 GTTATATAATATATA TCTGTTATATA TAT TATATAACAGA TGTTTTAAAAATAAA CLI_1417 1486910 - 1486131 - | putative cell wall hydrolase TERM 2273 1486252 - 1486265 + g 80 -2.3 -5.66989 | TCAGATCCATATAAA GCTTC TTTA GCAGC TTTTTTTGATGTTTC CLI_1418 1487250 - 1487375 + | hypothetical protein rbr 1487699 - 1488286 + | rubrerythrin TERM 2274 1488374 - 1488410 + F 70 -4.5 -5.09259 | opp_overlap 1488374, overlap 1488369 TATTAAATACAAAAA GCTATGAAACAGAGG GATAACA CCTTAATTTCATAGC TTTTATTTTACAATA TERM 2275 1488410 - 1488374 - f 73 -4.5 -5.22289 | opp_overlap 1488374 1488369 TATTAAATACAAAAA GCTATGAAACAGAGG GATAACA CCTTAATTTCATAGC TTTTATTTTACAATA TERM 2276 1488522 - 1488538 + F 76 -9.5 -2.81134 | opp_overlap 1488513 1488528, overlap 1488521 TGAAAGCGATTCGCA CCAAATC AAA GATTTGG ATTCTCTGCTTTTCT CLI_1420 1488772 - 1490232 + | N-acetylmuramoyl-L-alanine amidase TERM 2277 1490497 - 1490529 + T 73 -2.9 -5.64421 | opp_overlap 1490480, overlap 1490499 AAAATTAAAGCTATT TTTATTTTAAAACAG TTC CTATTTTAAAGTATA TTTTTTATTTCAAGT ptsG 1492564 - 1490534 - | PTS system, glucose-specific, IIABC component TERM 2278 1490994 - 1491010 + g 79 -5.2 -5.2166 | opp_overlap 1490985 1490994, overlap 1490986 AATTTATCTTTAGAA GAAACT TTTAC AGTTTC TTTTTTAGGTTCTTC TERM 2279 1492678 - 1492666 - H 78 -6.3 -4.94672 | opp_overlap 1492665 1492671 AAATAAGATTAAAAA GTGTA GAA TACAC CTATGTAATCTTAAA TERM 2280 1492762 - 1492772 + H 82 -2.6 -6.17268 | opp_overlap 1492766, overlap 1492766 TAAATTCATTTATAC TATA TCA TATA TTTTTTTTATTATCA TERM 2281 1492986 - 1492961 - H 83 -7.8 -4.61231 | opp_overlap 1492963 TCATATGTTTAAAAA TACCATTATT GTACAT AATAATGGTA ATTAAAAAAATAAGA CLI_1422 1493020 - 1493667 + | undecaprenyl pyrophosphate synthetase-like protein CLI_1423 1493810 - 1493926 + | hypothetical protein CLI_1424 1494055 - 1494573 + | hypothetical protein CLI_1425 1494868 - 1495281 + | putative transcriptional regulator CLI_1426 1495478 - 1497364 + | carbon monoxide dehydrogenase CLI_1427 1497510 - 1497953 + | nitrate reductase, iron-sulfur subunit TERM 2282 1499296 - 1499285 - g 78 -3 -5.55001 | overlap 1499291 TAATAAAAAATAAAA TAGA TATA TCTA AAATAGATAAGGATA noxA 1498153 - 1499379 + | nitrate reductase, NADH oxidase subunit TERM 2283 1499405 - 1499433 + F 100 -13.4 -5.07011 | CAGTGTTTCCATCAG GCTGTTGATAAA CATAT TTTATCAACAGC TTTTTAATTTGTATA CLI_1429 1499549 - 1500220 + | DNA-binding response regulator CLI_1430 1500208 - 1501305 + | putative sensor histidine kinase CLI_1431 1501371 - 1502783 + | ABC transporter, permease protein CLI_1432 1502789 - 1503454 + | ABC transporter, ATP-binding protein TERM 2284 1503496 - 1503539 + T 100 -7.7 -5.50723 | opp_overlap 1503497 1503499, overlap 1503499 ACATATTATATAGAA AGAGGTATCTCAAAATAAA ATTAAA TCTATTTTGAGATACCTTA TTTTTGTTTTACTAA TERM 2285 1503538 - 1503497 - T 100 -11.2 -4.16301 | opp_overlap 1503496 1503499, overlap 1503499 CATATTATATAGAAA GAGGTATCTCAAAATAAA ATTAAA TCTATTTTGAGATACCTT ATTTTTGTTTTACTA TERM 2286 1503536 - 1503499 - T 100 -13.8 -3.67067 | opp_overlap 1503499 1503496, overlap 1503497 TATTATATAGAAAGA GGTATCTCAAAATAAA ATTAAA TCTATTTTGAGATACC TTATTTTTGTTTTAC TERM 2287 1503499 - 1503536 + T 100 -11.6 -4.80077 | opp_overlap 1503497 1503499, overlap 1503496 TATTATATAGAAAGA GGTATCTCAAAATAAA ATTAAA TCTATTTTGAGATACC TTATTTTTGTTTTAC CLI_1433 1504558 - 1503584 - | putative transporter CLI_1434 1505117 - 1504950 - | hypothetical protein TERM 2288 1505099 - 1505149 + g 100 -13 -4.77079 | opp_overlap 1505091 1505105 1505108, overlap 1505105 TATAAAGCCTTCCTA TTGAAAGGAGATGTCTCAAGAT ACATTTG ATCTTAAGACATCTTCTTTTAA TTTTATTAGTATATA TERM 2289 1505143 - 1505105 - G 83 -9.8 -3.64703 | opp_overlap 1505099 1505105, overlap 1505091 1505108 GCCTTCCTATTGAAA GGAGATGTCTCAAGAT ACATTTG ATCTTAAGACATCTTC TTTTAATTTTATTAG TERM 2290 1505105 - 1505143 + g 100 -9.8 -4.78029 | opp_overlap 1505091 1505105 1505108, overlap 1505099 GCCTTCCTATTGAAA GGAGATGTCTCAAGAT ACATTTG ATCTTAAGACATCTTC TTTTAATTTTATTAG TERM 2291 1505140 - 1505108 - G 77 -10.1 -2.94144 | opp_overlap 1505105 1505099, overlap 1505105 TTCCTATTGAAAGGA GATGTCTCAAGAT ACATTTG ATCTTAAGACATC TTCTTTTAATTTTAT CLI_1435 1505952 - 1505266 - | Crp/FNR family transcriptional regulator TERM 2292 1505338 - 1505349 + g 72 -4.4 -5.06414 | overlap 1505322 TTTCTTATATCCTAA GGAA ATCA TTCC TTTTTCTTGAAAAGA TERM 2293 1505655 - 1505678 + g 74 -9 -3.28119 | gap 1, opp_overlap 1505651 1505650 1505647 CTGAAATTAATTCGA CATCTG-TAGC AGC GCTAACAGATG TTAATCTAGATCCAT CLI_1436 1506069 - 1507268 + | major facilitator superfamily protein TERM 2294 1508178 - 1508165 - g 72 -6.7 -4.09685 | GTTGATTTCGGAAAA GCAGA CTTT TCTGC TGGAGGAGATACTTT CLI_1437 1507571 - 1508485 + | iron chelate ABC transporter solute-binding protein CLI_1438 1508507 - 1509505 + | iron chelate ABC transporter permease protein CLI_1439 1509508 - 1510269 + | iron chelate ABC transporter ATP-binding protein TERM 2295 1510322 - 1510288 - T 85 -10.9 -2.85351 | opp_overlap 1510288 1510320, overlap 1510291 GGGTGTGATATTACA GTATCAGTGACTGTT ATAAA AACAGCCACTGATAG TAATTAACATTATTA TERM 2296 1510288 - 1510322 + T 73 -8.7 -2.77167 | opp_overlap 1510288 1510291, overlap 1510320 GGGTGTGATATTACA GTATCAGTGACTGTT ATAAA AACAGCCACTGATAG TAATTAACATTATTA TERM 2297 1510319 - 1510291 - T 90 -12.6 -2.68434 | opp_overlap 1510288, overlap 1510288 TGTGATATTACAGTA TCAGTGACTGTT ATAAA AACAGCCACTGA TAGTAATTAACATTA CLI_1440 1510825 - 1510490 - | hypothetical protein CLI_1441 1512177 - 1510900 - | iron-sulfur cluster-binding protein TERM 2298 1511482 - 1511501 + g 70 -4.4 -4.86001 | gap 1, overlap 1511486 CATATTTAAAATATC TAGA-GCTT CAG AAGCATCTA TTTTTCTAGCATAAT TERM 2299 1513212 - 1513202 - g 86 -3.2 -5.86332 | GGAAGCGAAAAAAAA TGGC GCT ACCA CTATAGCTATAACTA CLI_1442 1512597 - 1513442 + | RpiR family transcriptional regulator TERM 2300 1513491 - 1513514 + F 83 -6.1 -5.34857 | AATTTAGATGGTGAA GCAATGAGT ATAAAA ATTCATTGC TTTTATTTTATTTAA TERM 2301 1514507 - 1514497 - g 75 -4 -5.28778 | AGCAGGTAGAAAAAA TTCT TAA AGAA ACAAATTTTGATGTT CLI_1443 1513722 - 1514630 + | glucokinase regulator-like protein TERM 2302 1515474 - 1515458 - g 79 -5.2 -5.25906 | opp_overlap 1515458 AGAAAGTAAGAAAAA TAATGC CAGAT GCATTA GATTTATTTATGACT CLI_1444 1514743 - 1516098 + | PTS system, IIBC components CLI_1445 1516524 - 1517600 + | hypothetical protein TERM 2303 1517676 - 1517643 - f 78 -8.3 -3.97511 | opp_overlap 1517645, overlap 1517645 TAGCTAATACAAGAA CAGCCTCTTAAGA TAAAAAGT TCTTAAGAGGCTT ATATACTATTATCAA TERM 2304 1517645 - 1517674 + F 95 -10.9 -3.6142 | opp_overlap 1517643 1517645 GCTAATACAAGAACA GCCTCTTAAGA TAAAAAGT TCTTAAGAGGC TTATATACTATTATC TERM 2305 1517674 - 1517645 - f 95 -10.9 -3.56921 | opp_overlap 1517645, overlap 1517643 GCTAATACAAGAACA GCCTCTTAAGA TAAAAAGT TCTTAAGAGGC TTATATACTATTATC TERM 2306 1518002 - 1518012 + G 72 -4 -5.06816 | TTAATGGTATAGGAT TAGA ACA TCTA TTTTTATTGAAAGAT CLI_1446 1517932 - 1518540 + | hypothetical protein CLI_1447 1518823 - 1519464 + | hypothetical protein TERM 2307 1519686 - 1519668 - f 72 -8.2 -3.2511 | opp_overlap 1519668, overlap 1519667 TGTTATTTATAAAAG GCATGAAA TCT TCTCATGC TTTGACGTATTAATT TERM 2308 1519795 - 1519778 - g 71 -4.9 -4.80882 | gap 1, opp_overlap 1519776 1519778 ATCTTACATGAAAAA GCTAT-CC ACA GGTATAGC TGTATTTTTATGTAC CLI_1448 1519770 - 1521641 + | hypothetical protein CLI_1449 1521694 - 1522932 + | putative cell-surface protein CLI_1450 1522932 - 1523474 + | hypothetical protein TERM 2309 1523478 - 1523527 + T 85 -11.5 -2.57211 | opp_overlap 1523476 1523478 1523481, overlap 1523477 1523480 1523488 TTTGAAATATAAACA GAGTTCTTGGCTTCAGAGGGAGT TTTT ACTCCAACTGAAGCTTAGAAATC GTTATCCAGGGACGT TERM 2310 1523527 - 1523478 - T 84 -9.3 -3.76586 | opp_overlap 1523478 1523477 1523480 1523488, overlap 1523476 1523481 TTTGAAATATAAACA GAGTTCTTGGCTTCAGAGGGAGT TTTT ACTCCAACTGAAGCTTAGAAATC GTTATCCAGGGACGT TERM 2311 1523524 - 1523481 - T 75 -9.6 -2.66288 | opp_overlap 1523480 1523478 1523477 1523488, overlap 1523478 1523476 GAAATATAAACAGAG TTCTTGGCTTCAGAGGGAGT TTTT ACTCCAACTGAAGCTTAGAA ATCGTTATCCAGGGA TERM 2312 1523756 - 1523703 - T 79 -8.1 -4.10407 | gap 1, opp_overlap 1523708 1523713 1523746, overlap 1523708 1523713 ATATTAATAATTAAA TATAA-TAAAACACTATCAAAT ATTTTTATACA ATTTGATAGTGTTTTATTTATA AAAATTTCTTTAATA TERM 2313 1523750 - 1523708 - T 86 -9.6 -3.92809 | opp_overlap 1523708 1523713 1523746, overlap 1523703 1523713 AATAATTAAATATAA TAAAACACTATCAAAT ATTTTTATACA ATTTGATAGTGTTTTA TTTATAAAAATTTCT TERM 2314 1523708 - 1523750 + T 86 -9.6 -3.91473 | opp_overlap 1523708 1523703 1523713, overlap 1523713 1523746 AATAATTAAATATAA TAAAACACTATCAAAT ATTTTTATACA ATTTGATAGTGTTTTA TTTATAAAAATTTCT TERM 2315 1523713 - 1523745 + T 72 -5.1 -4.99043 | opp_overlap 1523708 1523703 1523713, overlap 1523708 TTAAATATAATAAAA CACTATCAAAT ATTTTTATACA ATTTGATAGTG TTTTATTTATAAAAA TERM 2316 1523745 - 1523713 - T 72 -5.1 -4.95302 | opp_overlap 1523713 1523708, overlap 1523708 1523703 TTAAATATAATAAAA CACTATCAAAT ATTTTTATACA ATTTGATAGTG TTTTATTTATAAAAA CLI_1451 1524054 - 1523782 - | hypothetical protein TERM 2317 1524307 - 1524317 + H 70 -4 -5.10665 | ATGGTTCTATGACAG GAAA TTA TTTC TTTTATTTCTTAAAT CLI_1452 1524551 - 1526269 + | methyl-accepting chemotaxis protein TERM 2318 1526326 - 1526274 - f 78 -7.8 -4.32607 | gap 1, opp_overlap 1526275 1526276 1526278 1526286, overlap 1526276 1526279 TTAAAATTTAATAAA CAGAGTTCTTGGCTTCAGAGGGAGT TTTT ACTCCCACTAAAGCTTAGAAATC-G TTATCCAGGGACGTG TERM 2319 1526325 - 1526276 - f 95 -11.5 -3.75005 | opp_overlap 1526275 1526276 1526278 1526286, overlap 1526274 1526279 AAAATTTAATAAACA GAGTTCTTGGCTTCAGAGGGAGT TTTT ACTCCCACTAAAGCTTAGAAATC GTTATCCAGGGACGT TERM 2320 1526276 - 1526325 + F 85 -11.5 -2.57211 | opp_overlap 1526276 1526274 1526279, overlap 1526275 1526278 1526286 AAAATTTAATAAACA GAGTTCTTGGCTTCAGAGGGAGT TTTT ACTCCCACTAAAGCTTAGAAATC GTTATCCAGGGACGT TERM 2321 1526322 - 1526279 - f 86 -11.8 -2.64962 | opp_overlap 1526278 1526276 1526275 1526286, overlap 1526276 1526274 ATTTAATAAACAGAG TTCTTGGCTTCAGAGGGAGT TTTT ACTCCCACTAAAGCTTAGAA ATCGTTATCCAGGGA TERM 2322 1526405 - 1526436 + F 100 -10.4 -5.30616 | opp_overlap 1526405 AGTCATCGGATAAAA TATAGATGGCTTTT TAAG AAGAGTCATCTATA TTTTTATTTGGATAA TERM 2323 1526436 - 1526405 - f 72 -6 -4.40358 | opp_overlap 1526405 AGTCATCGGATAAAA TATAGATGGCTTTT TAAG AAGAGTCATCTATA TTTTTATTTGGATAA TERM 2324 1527012 - 1527000 - g 72 -6.3 -4.21787 | AAAAAAGGTGTAAAA TTCCA TGA TGGAA AAGAACTTAAAGCGG TERM 2325 1527201 - 1527187 - g 71 -7.2 -3.76837 | TAGACAAGTTAACAA TTGGAA TAG TTCCAA AGCATGCTCTAGAAG CLI_1453 1526676 - 1528265 + | peptide/opine/nickel uptake ABC transporter substrate-binding protein TERM 2326 1528349 - 1528374 + G 83 -9.7 -3.57406 | gap 1, opp_overlap 1528349 1528348, overlap 1528348 TTTCTTATCATAAAT GCTG-CGCCGGG AGA TCCGGCGGTAGC TATTTATGGTGGGAA CLI_1454 1528262 - 1529218 + | peptide/opine/nickel uptake ABC transporter permease CLI_1455 1529227 - 1530027 + | peptide/opine/nickel uptake ABC transporter permease TERM 2327 1530185 - 1530173 - g 87 -3.5 -5.95946 | TGAAGAAGAAAAAAA TAAAA AAA TTTTA GTTGGGAATACTAAT CLI_1456 1530126 - 1530920 + | peptide/opine/nickel uptake ABC transporter ATP-binding protein CLI_1457 1530914 - 1531726 + | peptide/opine/nickel uptake ABC transporter ATP-binding protein TERM 2328 1531938 - 1531981 + F 100 -10.7 -4.38774 | opp_overlap 1531941, overlap 1531941 AAGTAGTCATATTTT AAAGAGTTGAATATAAATT TTAATT GATTTATATTCAACTCTTA TTTTAATATAATGTT TERM 2329 1531941 - 1531978 + F 100 -12.4 -4.29905 | opp_overlap 1531941, overlap 1531938 TAGTCATATTTTAAA GAGTTGAATATAAATT TTAATT GATTTATATTCAACTC TTATTTTAATATAAT TERM 2330 1531978 - 1531941 - f 95 -11.7 -3.64103 | opp_overlap 1531941 1531938 TAGTCATATTTTAAA GAGTTGAATATAAAT TTTAATTG ATTTATATTCAACTC TTATTTTAATATAAT TERM 2331 1532128 - 1532110 - f 70 -3.2 -5.31519 | opp_overlap 1532110 1532121, overlap 1532121 ATATTCAAATAAAAA TCTAATTA ATA TTATTAGA TAATTAATTTCATAA CLI_1458 1532184 - 1532696 + | putative lipoprotein TERM 2332 1532802 - 1532829 + T 100 -10.1 -5.24129 | opp_overlap 1532802 TTAATTTATAAAAAA GTAACACTTAT AAAATC ATAAGTGTTAC TTTTTTGTAAAGGGG TERM 2333 1532829 - 1532802 - T 100 -10.8 -5.31456 | opp_overlap 1532802 TTAATTTATAAAAAA GTAACACTTATA AAAT CATAAGTGTTAC TTTTTTGTAAAGGGG CLI_1459 1533776 - 1532988 - | manganese/zinc/iron chelate ABC transporter permease TERM 2334 1533273 - 1533263 - G 76 -2.6 -5.63645 | opp_overlap 1533263 CTAAAATAGAAAAAA TATA ATT TATA AGTTTTACTCTTACA CLI_1460 1534429 - 1533776 - | manganese/zinc/iron chelate ABC transporter ATP-binding protein TERM 2335 1534582 - 1534568 - H 73 -7.2 -4.18367 | TATTATACATATAAA TGCAAA TAG TTTGCA ATAACCTATAGAAAA CLI_1461 1534650 - 1535588 + | manganese/zinc/iron chelate ABC transporter substrate-binding protein CLI_1462 1536193 - 1535702 - | hypothetical protein TERM 2336 1535871 - 1535851 - G 75 -5.5 -4.78848 | CGGCTAAAGACAAAA CTCCTAAAA ATA TTTCAAGAG CAGAGGAACCGTAAA TERM 2337 1536601 - 1536585 - H 83 -10.9 -2.72511 | overlap 1536584 CGCACTCTGTGAAAG CGATTCG CAC CGAATCG AAGATTTGGACTCTC TERM 2338 1536688 - 1536712 + H 73 -7.9 -3.71552 | opp_overlap 1536688 1536687 CTAAAGGATAACAAC TTCTAAGGGGT AAA ACTCCTAAGAA TTCTGTTAATAAGCT TERM 2339 1536756 - 1536725 - H 89 -10.2 -3.62522 | GAATTCTGTTAATAA GCTTTAGTTGGAGT AAAA ACTCCCTCTAAAGC CAAGAACTCTGTTTA CLI_1463 1536847 - 1538613 + | helicase domain-containing protein CLI_1464 1538748 - 1539296 + | GGDEF domain-containing protein TERM 2340 1539300 - 1539339 + F 100 -12.7 -4.15044 | opp_overlap 1539300 1539306 1539335, overlap 1539306 AAAATAGGGTAGTAA TTAAAATATTTTGTATA TATTAT TATACAAAATATTTTAA TTTATTAAAGAAACC TERM 2341 1539339 - 1539300 - f 95 -12.7 -3.19851 | opp_overlap 1539300 1539306, overlap 1539306 1539335 AAAATAGGGTAGTAA TTAAAATATTTTGTATA TATTAT TATACAAAATATTTTAA TTTATTAAAGAAACC TERM 2342 1539306 - 1539333 + F 79 -7.3 -4.67942 | opp_overlap 1539306 1539300, overlap 1539300 GGGTAGTAATTAAAA TATTTTGTATA TATTAT TATACAAAATA TTTTAATTTATTAAA TERM 2343 1539333 - 1539306 - f 77 -7.3 -4.45544 | opp_overlap 1539300 1539306, overlap 1539300 GGGTAGTAATTAAAA TATTTTGTATA TATTAT TATACAAAATA TTTTAATTTATTAAA TERM 2344 1539498 - 1539528 + F 100 -14.3 -3.65112 | opp_overlap 1539498 1539503, overlap 1539503 CCTCCTTATTAAAAA TAAAAGAACCCTA TTTAC TAGGGTTCTTTTA TTGTGTAGTTTCAAT TERM 2345 1539528 - 1539498 - f 100 -14.3 -4.72272 | opp_overlap 1539498 1539503, overlap 1539503 CCTCCTTATTAAAAA TAAAAGAACCCTA TTTAC TAGGGTTCTTTTA TTGTGTAGTTTCAAT TERM 2346 1539523 - 1539503 - f 100 -9.8 -5.3104 | opp_overlap 1539498 1539503, overlap 1539498 TTATTAAAAATAAAA GAACCCTA TTTAC TAGGGTTC TTTTATTGTGTAGTT TERM 2347 1539503 - 1539523 + F 100 -9.8 -4.86822 | opp_overlap 1539503 1539498, overlap 1539498 TTATTAAAAATAAAA GAACCCTA TTTAC TAGGGTTC TTTTATTGTGTAGTT TERM 2348 1539571 - 1539593 + F 70 -7.2 -3.70149 | TATATTAGCTTATTT TTATTGTATC CAA GATATAATAA TTTCAATCATATAAA TERM 2349 1540361 - 1540344 - gf 85 -2.1 -6.07374 | ATAAAAAAGAAAAAA TTAAAAT AGCC ACTTTAA AAGGACCTACTGGTA TERM 2350 1540705 - 1540693 - gf 78 -6.3 -4.69962 | TATATTAAAAAAGAA TGGAT TGG ATCCA GATAAGGATGTAAAA CLI_1465 1540208 - 1541215 + | putative lipoprotein TERM 2351 1541272 - 1541286 + GF 100 -11.4 -4.87665 | TCTGGGTATTTATAT GGGAGC TTA GCTCCC TTTTTATAAATAACG CLI_1466 1541187 - 1541948 + | putative ABC transporter, permease protein CLI_1467 1542088 - 1542687 + | ABC transporter, ATP-binding protein TERM 2352 1542693 - 1542714 + F 83 -7.4 -5.02287 | opp_overlap 1542693 TAAATTATAGATTAA GCAAAGAT TTTTAT ATCTTTGC TTTTATATTTTTATA CLI_1468 1542966 - 1543439 + | FUR family transcriptional regulator CLI_1469 1543409 - 1543882 + | hypothetical protein TERM 2353 1543919 - 1543892 - f 100 -14.4 -3.93708 | opp_overlap 1543883 1543881 1543892 1543896, overlap 1543884 AAATAAATTATTAAA TTAAGCACCATT TATA AATGGTGCTTAA TTATGATGGCTGTTT TERM 2354 1543892 - 1543919 + F 100 -14.4 -3.44608 | opp_overlap 1543892 1543884, overlap 1543883 1543881 1543896 AAATAAATTATTAAA TTAAGCACCATT TATA AATGGTGCTTAA TTATGATGGCTGTTT TERM 2355 1543896 - 1543915 + F 90 -10.8 -3.4759 | opp_overlap 1543892 1543884, overlap 1543892 1543883 1543881 AAATTATTAAATTAA GCACCATT TATA AATGGTGC TTAATTATGATGGCT CLI_1470 1544009 - 1545280 + | zinc carboxypeptidase family protein CLI_1471 1545325 - 1545441 + | hypothetical protein rnz 1545570 - 1546610 + | ribonuclease Z CLI_1473 1546955 - 1548274 + | amino acid permease family protein CLI_1474 1548418 - 1548795 + | hypothetical protein CLI_1475 1548808 - 1549965 + | sensor histidine kinase TERM 2356 1549993 - 1550024 + F 89 -10.2 -3.62522 | opp_overlap 1549986, overlap 1549994 TAAACAGAGTTCTTG ACTTCAGAGAGAGT TTTT ACTCCCTCTGAAGC TTATTAACAGAATTC TERM 2357 1549994 - 1550023 + F 100 -13.7 -2.77192 | opp_overlap 1549986, overlap 1549993 AAACAGAGTTCTTGA CTTCAGAGAGAGT TTTT ACTCCCTCTGAAG CTTATTAACAGAATT TERM 2358 1550029 - 1550068 + F 73 -8.8 -2.92792 | gap 1, opp_overlap 1549986 1550037, overlap 1550033 1550034 1550065 CCCTCTGAAGCTTAT TAACAGAATTCTTAGGAGT TTT ACTCCTTAGAAGTC-GTTA TCCTTTAGGATAAAT TERM 2359 1550034 - 1550064 + F 80 -9.8 -2.76037 | opp_overlap 1550037, overlap 1550033 1550029 TGAAGCTTATTAACA GAATTCTTAGGAGT TTT ACTCCTTAGAAGTC GTTATCCTTTAGGAT TERM 2360 1550061 - 1550037 - f 90 -10.1 -3.71552 | opp_overlap 1550034 1550033 1550029 AGCTTATTAACAGAA TTCTTAGGAGT TTT ACTCCTTAGAA GTCGTTATCCTTTAG CLI_1476 1550250 - 1550903 + | LuxR family DNA-binding response regulator TERM 2361 1550976 - 1550995 + F 80 -9.4 -3.29727 | opp_overlap 1550976 1550988, overlap 1550974 ACCGTTCCCAAATAA TTAGTGAC TTAA GTCACTAA TGTTAGTTACTTAAG TERM 2362 1550995 - 1550976 - f 86 -9.4 -3.90922 | opp_overlap 1550976 1550974, overlap 1550988 ACCGTTCCCAAATAA TTAGTGAC TTAA GTCACTAA TGTTAGTTACTTAAG TERM 2363 1551023 - 1551065 + F 100 -8.7 -5.93809 | opp_overlap 1551023 AAGACAATGGTAAAA CTTCCTTAAATTTTCTATT ATATA ATTAGAAGATTTGAGGAGG TTTTTTTTATGAGCA CLI_1477 1551074 - 1552012 + | ABC transporter, ATP-binding protein TERM 2364 1552314 - 1552298 - g 71 -6.7 -4.02334 | opp_overlap 1552300 TATGTAGAGGATAAA GATAATT CAA AATTATC TAATGAATTTATAAA TERM 2365 1552796 - 1552780 - g 76 -6.7 -4.43844 | GTATTATTCAGAAAA GAAAAAT GGT ATTTTTC AAAGAACATTATCTA CLI_1478 1552118 - 1553296 + | putative ABC transporter, permease protein CLI_1479 1553298 - 1554398 + | hypothetical protein CLI_1480 1554417 - 1554638 + | hypothetical protein TERM 2366 1555161 - 1555151 - T 71 -6.8 -4.13014 | opp_overlap 1555146 1555151 TCTATACTCTGAAAA GTGC GTC GCAC TTTCCTCATCTTATG CLI_1481 1555718 - 1555167 - | nitroreductase family protein TERM 2367 1555996 - 1555970 - R 76 -8.3 -3.68348 | opp_overlap 1555968, overlap 1555945 1555968 TAGATATAAAGAATA TAGATTATATT TAATT AATATAATCTA ACCTAATAATGGGAT TERM 2368 1556186 - 1556161 - R 80 -9.3 -3.20307 | overlap 1556159 GTAAGACTATTAATA TCTTTATATAA ATAT TTATATAAAGA GCATATATTAGAAAA CLI_1482 1556767 - 1556276 - | hypothetical protein TERM 2369 1556856 - 1556840 - R 78 -5.3 -5.11112 | opp_overlap 1556834 1556821 AAAGTTTAATAAAAA TTTTATA TAA TATAAAA ACCACCTTAATAAAG TERM 2370 1556875 - 1556858 - R 100 -9.9 -5.1764 | opp_overlap 1556856 TATATAATATAAAAA CCACCTT AATA AAGGTGG CGTGGTATTTGCTAT TERM 2371 1556894 - 1556914 + r 70 -7.1 -3.68024 | opp_overlap 1556898 1556906 GGTATTTGCTATTTA TATATTAAA ATA TTTAATATA TTATATATTACAAAG CLI_1483 1557138 - 1556935 - | major cold shock protein TERM 2372 1557005 - 1557016 + g 78 -4.4 -5.4833 | AATTGAACTTTTTGT CCTT CTTC AAGG TTTTTTCTTGGCTCA pepD-1 1557405 - 1558868 + | aminoacyl-histidine dipeptidase TERM 2373 1558970 - 1558946 - g 100 -8.1 -5.89947 | opp_overlap 1558946 1558945 CAAATCTAAAAAAAA TATTATAATAG GTG CTACTATAATA ATTTTAATTACACTA CLI_1485 1558926 - 1559819 + | TPR domain-containing protein TERM 2374 1559845 - 1559864 + F 100 -9.4 -6.4275 | opp_overlap 1559845 CCAATAAATAAAAAA TTGTGCTT AATT AAGCACAA TTTTTTTTGTTTTTG TERM 2375 1559864 - 1559845 - f 100 -9.4 -5.80003 | opp_overlap 1559845 CCAATAAATAAAAAA TTGTGCTT AATT AAGCACAA TTTTTTTTGTTTTTG pdxK 1560087 - 1560923 + | pyridoxamine kinase TERM 2376 1561153 - 1561102 - T 80 -9.2 -3.16534 | gap 1, opp_overlap 1561103 1561109, overlap 1561109 1561112 ATTAATTATAGGTAA GTTAAAAGAGGTTGCTTGAAAATAA AAT TTATTTTCAGACAAC-TCTTTTAAT TTTTAGTGGTAATAA TERM 2377 1561103 - 1561152 + T 100 -12.7 -4.78107 | gap 1, opp_overlap 1561102 1561109 1561112, overlap 1561109 TTAATTATAGGTAAG TTAAAAGAGGTTGCTTGAAAATAA AAT TTATTTTCAGACAAC-TCTTTTAA TTTTTAGTGGTAATA TERM 2378 1561109 - 1561146 + T 81 -7.3 -4.80167 | gap 1, opp_overlap 1561109 1561102 1561112, overlap 1561103 ATAGGTAAGTTAAAA GAGGTTGCTTGAAAATAA AAT TTATTTTCAGACAAC-TC TTTTAATTTTTAGTG TERM 2379 1561146 - 1561109 - T 75 -7.3 -4.29176 | gap 1, opp_overlap 1561103 1561109, overlap 1561102 1561112 ATAGGTAAGTTAAAA GAGGTTGCTTGAAAATAA AAT TTATTTTCAGACAAC-TC TTTTAATTTTTAGTG TERM 2380 1561144 - 1561112 - T 80 -10.1 -2.83906 | opp_overlap 1561109 1561103, overlap 1561109 1561102 GGTAAGTTAAAAGAG GTTGCTTGAAAATAA AAT TTATTTTCAGACAAC TCTTTTAATTTTTAG CLI_1487 1561850 - 1561212 - | putative methionine-S-sulfoxide reductase TERM 2381 1562189 - 1562157 - H 95 -12.2 -3.71517 | opp_overlap 1562158, overlap 1562158 1562161 TAATAGTGAATATAA GTAAGGAGATAAGC GTAAT GCTTATCTCCTTAT TTTTTTATAATGTTA TERM 2382 1562188 - 1562158 - H 100 -15.7 -2.82187 | opp_overlap 1562158, overlap 1562157 1562161 AATAGTGAATATAAG TAAGGAGATAAGC GTAAT GCTTATCTCCTTA TTTTTTTATAATGTT TERM 2383 1562158 - 1562188 + H 100 -16.4 -5.70829 | opp_overlap 1562158 1562157 1562161 AATAGTGAATATAAG TAAGGAGATAAGCG TAA TGCTTATCTCCTTA TTTTTTTATAATGTT TERM 2384 1562185 - 1562161 - H 95 -13 -3.54784 | opp_overlap 1562158, overlap 1562158 1562157 AGTGAATATAAGTAA GGAGATAAGC GTAAT GCTTATCTCC TTATTTTTTTATAAT CLI_1488 1562664 - 1563428 + | peptide ABC transporter ATP-binding protein TERM 2385 1563559 - 1563545 - g 74 -7.2 -3.88618 | opp_overlap 1563544 AATATAATGATCAAA TTGCTA ATG TAGCAA ATGGTATGAAAACTG CLI_1489 1563415 - 1565304 + | peptide ABC transporter permease TERM 2386 1565460 - 1565443 - f 71 -5.7 -4.72386 | GAAAGCATGTAAAAA TATTCAA TAAA TTGAATA AAAAGCAGGAGGAAA CLI_1490 1565481 - 1565978 + | hypothetical protein CLI_1491 1566421 - 1567122 + | DNA-binding response regulator CLI_1492 1567124 - 1568101 + | sensor histidine kinase TERM 2387 1568422 - 1568434 + G 71 -4.9 -4.78848 | opp_overlap 1568422, overlap 1568417 GAAGGAAATTTAGAA GAAAA AAA TTTTC TTTTGTATTTCAAGA CLI_1493 1568175 - 1568930 + | peptide ABC transporter ATP-binding protein TERM 2388 1569833 - 1569819 - g 81 -7.2 -4.62708 | opp_overlap 1569819 1569817 AATAGATAAAAAGAA GGATAT TTT ATATCC TATTGATATAGCTTA TERM 2389 1570107 - 1570087 - g 75 -4.1 -5.27399 | opp_overlap 1570086 GAAGATATTAAAAAA TATTATTTC AAT GAAGTAATA AATATTAATGGTAAT CLI_1494 1568920 - 1570728 + | peptide ABC transporter permease CLI_1495 1570797 - 1571519 + | hypothetical protein TERM 2390 1572055 - 1572071 + G 81 -9.5 -3.65425 | GAAGATTGCTTATTT TCTGCTA CTG TAGCAGA TTTAGACTATATAGG CLI_1496 1571866 - 1572900 + | hypothetical protein TERM 2391 1572954 - 1572920 - f 81 -8.8 -3.94868 | opp_overlap 1572920, overlap 1572910 1572914 1572923 TATAATAAACTTAAA TAAGTCTATAAAGATA TTG TAACTTTATAGGCTTA TTTTTATTGATATGT TERM 2392 1572920 - 1572954 + F 100 -11 -5.17744 | opp_overlap 1572910 1572920 1572914 1572923 TATAATAAACTTAAA TAAGTCTATAAAGATA TTG TAACTTTATAGGCTTA TTTTTATTGATATGT CLI_1497 1573283 - 1574461 + | aminotransferase, classes I and II CLI_1498 1574648 - 1575466 + | amino acid ABC transporter, amino acid-binding protein CLI_1499 1575479 - 1576144 + | His/Glu/Gln/Arg/opine ABC transporter permease TERM 2393 1576572 - 1576561 - g 72 -4.4 -5.09762 | opp_overlap 1576547 ATTGGAAGATAAAAA GGAT TATT ATCC TTCCAAGTTATCTGG CLI_1500 1576163 - 1576900 + | polar amino acid ABC transporter ATP-binding protein CLI_1501 1577325 - 1577543 + | putative DNA-binding protein TERM 2394 1577695 - 1577641 - T 72 -9.1 -2.65091 | opp_overlap 1577643 1577656, overlap 1577640 1577656 ATGTGAATTTACAAT TGTATATAATAAAAACACTATCA TTTATATTT TGATAGTGTTTTTATTATATATT TAAAGTATATTAGCA TERM 2395 1577643 - 1577693 + T 100 -16.1 -3.66883 | opp_overlap 1577641 1577640 1577656, overlap 1577656 GTGAATTTACAATTG TATATAATAAAAACACTATCA TTTATATTT TGATAGTGTTTTTATTATATA TTTAAAGTATATTAG TERM 2396 1577656 - 1577680 + T 76 -4.4 -5.28561 | opp_overlap 1577641 1577640 1577656, overlap 1577643 TGTATATAATAAAAA CACTATCA TTTATATTT TGATAGTG TTTTTATTATATATT TERM 2397 1577680 - 1577656 - T 73 -4.4 -5.24796 | opp_overlap 1577656 1577643, overlap 1577641 1577640 TGTATATAATAAAAA CACTATCA TTTATATTT TGATAGTG TTTTTATTATATATT CLI_1502 1579016 - 1577742 - | D-alanyl-D-alanine carboxypeptidase family protein TERM 2398 1578374 - 1578415 + g 71 -3.2 -5.20735 | overlap 1578375 1578376 AAAGCTTATTACTAT TTTCTATAGTCATTTTTG TACCTT TAGAAGTGACTATAGAGC TTTCTTTTTTATTAG CLI_1503 1579315 - 1579938 + | MutT/NUDIX NTP pyrophosphatase TERM 2399 1579996 - 1579944 - T 100 -10.9 -4.95211 | opp_overlap 1579944, overlap 1579956 AAAAAATTAATAAAA GTATATTAAATATTCCACCAACT TTTAATT AGTTGGTGGAATGTTTTAAATAC TTTTTTCCTGTTTTC TERM 2400 1579944 - 1579996 + T 100 -13.1 -5.36314 | opp_overlap 1579944 1579956 AAAAAATTAATAAAA GTATATTAAATATTCCACCAACT TTTAATT AGTTGGTGGAATGTTTTAAATAC TTTTTTCCTGTTTTC TERM 2401 1579984 - 1579956 - T 95 -11.9 -3.53452 | opp_overlap 1579944, overlap 1579944 AAAGTATATTAAATA TTCCACCAACT TTTAATT AGTTGGTGGAA TGTTTTAAATACTTT CLI_1504 1580336 - 1579989 - | hypothetical protein CLI_1505 1580682 - 1581845 + | NADH-dependent butanol dehydrogenase TERM 2402 1582230 - 1582240 + G 72 -5.4 -4.7329 | AAAGGGGAATTTTTA TGGA ATG TCCA TTTTTAACTACTTTT CLI_1506 1582229 - 1582453 + | hypothetical protein TERM 2403 1582494 - 1582478 - f 73 -2.4 -5.66684 | opp_overlap 1582478 1582492, overlap 1582492 CAATCTATAAAAAAA TTATTA GTATA TAATAA TAATTTTTATTAATC TERM 2404 1582583 - 1582543 - f 100 -13.7 -3.51232 | overlap 1582539 TTTTGCTTAAAGCAA TATCTATACACTTAAAATA TTA TGCTTTAAGTGTATAGATA AGAAGCGATGCTTGA CLI_1507 1582626 - 1584146 + | C4-dicarboxylate transporter TERM 2405 1584212 - 1584159 - T 73 -3.4 -5.5074 | opp_overlap 1584161 1584166, overlap 1584161 1584166 TAATGTAATAAAAAA TTCAAAAGCTATGAGTTGAAAAAT TTTATT ATATTTCAATTCATAGCTTTTATT GCTTATTATAAGTTA TERM 2406 1584210 - 1584161 - T 82 -10.4 -2.91664 | opp_overlap 1584161 1584166, overlap 1584159 1584166 ATGTAATAAAAAATT CAAAAGCTATGAGTTGAAAAAT TTTATT ATATTTCAATTCATAGCTTTTA TTGCTTATTATAAGT TERM 2407 1584161 - 1584210 + T 91 -10.4 -3.5861 | opp_overlap 1584161 1584159 1584166, overlap 1584166 ATGTAATAAAAAATT CAAAAGCTATGAGTTGAAAAAT TTTATT ATATTTCAATTCATAGCTTTTA TTGCTTATTATAAGT TERM 2408 1584205 - 1584166 - T 82 -8.1 -4.55016 | opp_overlap 1584161 1584166, overlap 1584161 1584159 ATAAAAAATTCAAAA GCTATGAGTTGAAAAAT TTTATT ATATTTCAATTCATAGC TTTTATTGCTTATTA TERM 2409 1584166 - 1584205 + T 100 -10.3 -4.84262 | opp_overlap 1584166 1584161 1584159, overlap 1584161 ATAAAAAATTCAAAA GCTATGAGTTGAAAAAT TTTATT ATATTTCAATTCATAGC TTTTATTGCTTATTA CLI_1508 1585766 - 1584285 - | nicotinate phosphoribosyltransferase TERM 2410 1585478 - 1585496 + g 72 -7.6 -3.62522 | opp_overlap 1585477 AAGAAAATTTAAAGT TTTTTAGA TAG TCTAAAAA TTCTTCGGAAAATTC CLI_1509 1586224 - 1587030 + | polar amino acid ABC transporter amino acid-binding protein TERM 2411 1587476 - 1587489 + G 72 -5.3 -4.79667 | CAAATATCTGTACCT CCATT AGTA AATGG TTTTTCATCACTTTT CLI_1510 1587032 - 1587691 + | His/Glu/Gln/Arg/opine ABC transporter permease TERM 2412 1587758 - 1587772 + F 100 -10 -5.56263 | GTATTTGATTATTTC GCAGCT AAA AGCTGC TTTTTCTTTTGTAAT TERM 2413 1587966 - 1587981 + G 82 -6.8 -4.85599 | opp_overlap 1587963, overlap 1587963 GAATAATACAATTGC CCTGTC CAGA GGCAGG TTTTTATGGAATGAG CLI_1511 1587821 - 1588369 + | hypothetical protein CLI_1512 1588464 - 1590476 + | hypothetical protein CLI_1513 1590827 - 1591129 + | hypothetical protein TERM 2414 1591301 - 1591271 - f 72 -8.5 -3.19921 | opp_overlap 1591271 ATATAATTTTATTAA GCTCATATTCT AAAAATTAG AGAATATGAGC TTTTAAATTAAGAAA TERM 2415 1591271 - 1591301 + F 80 -8.5 -4.27316 | opp_overlap 1591271 ATATAATTTTATTAA GCTCATATTCT AAAAATTAG AGAATATGAGC TTTTAAATTAAGAAA CLI_1514 1591332 - 1593575 + | putative cell division protein FtsA TERM 2416 1593948 - 1593924 - g 83 -3 -5.80364 | ACTTCAAGAAAAAAA TATTTGTGAT TATTC ATCAAAAATA GAAGGGAAAATGCAT TERM 2417 1594254 - 1594243 - g 78 -4.4 -5.3658 | overlap 1594221 1594250 ACCATAAAAATAAAA GGAA AGGG TTCC CATGGAGCTAGGCCT TERM 2418 1594440 - 1594404 - g 72 -6.9 -4.16943 | gap 1 GGGTACAGCTCAAAA TATAATACCAGATGAG GTTATA CT-ATCTGGCATTATA AGAGTGATGAAAACT CLI_1515 1593664 - 1594842 + | amidohydrolase family protein TERM 2419 1595533 - 1595522 - g 71 -3 -5.32565 | opp_overlap 1595522 GAATTAAGCAAAAAA TATG GAGA CATA CTTCTTAGGGAAATG CLI_1516 1594898 - 1595749 + | N-acetylmuramoyl-L-alanine amidase TERM 2420 1595791 - 1595843 + F 100 -13.9 -3.55203 | opp_overlap 1595796 1595798, overlap 1595794 TTAATGTTATATGTT TAATATATTCCACTAAGGTAAATTT TTC ATGTTTACTTTAGTGGAATATCTTA TTTAAAGAAACTTTT TERM 2421 1595794 - 1595840 + F 100 -11.2 -3.90922 | opp_overlap 1595796 1595798, overlap 1595791 ATGTTATATGTTTAA TATATTCCACTAAGGTAAATTT TTC ATGTTTACTTTAGTGGAATATC TTATTTAAAGAAACT TERM 2422 1595838 - 1595796 - f 78 -9.5 -3.05343 | opp_overlap 1595794 1595791, overlap 1595798 GTTATATGTTTAATA TATTCCACTAAGGTAAA TTTTTCATG TTTACTTTAGTGGAATA TCTTATTTAAAGAAA CLI_1517 1596229 - 1597182 + | RluA family pseudouridine synthase spoVB-1 1597214 - 1598821 + | stage V sporulation protein B TERM 2423 1598863 - 1598827 - T 100 -11.1 -5.86465 | opp_overlap 1598827 AATAAGATAAAAAAA CATTAGATTGGCAAG GTGTTTT CTTGCTAATCTAATG TTTTTTATTTGTAAT TERM 2424 1598827 - 1598863 + T 100 -14 -5.73978 | opp_overlap 1598827 AATAAGATAAAAAAA CATTAGATTGGCAAGG TGTTT TCTTGCTAATCTAATG TTTTTTATTTGTAAT CLI_1519 1600363 - 1598858 - | polysaccharide biosynthesis family protein TERM 2425 1599718 - 1599731 + g 72 -2.5 -5.36441 | TATTATAGCTAAATT TAAAT TTCA ATTTA TTTTTTATATAAAAA CLI_1520 1600683 - 1601246 + | hypothetical protein TERM 2426 1601244 - 1601269 + T 100 -9.2 -5.07107 | opp_overlap 1601244 ATAATAAATGAAAAA TAGAACTTAG ATTTAA CTAAGTTCTA TTTTTTAACCCTTTG TERM 2427 1601269 - 1601244 - T 100 -9.2 -5.10877 | opp_overlap 1601244 ATAATAAATGAAAAA TAGAACTTAG ATTTAA CTAAGTTCTA TTTTTTAACCCTTTG CLI_1521 1601674 - 1601267 - | hypothetical protein TERM 2428 1601728 - 1601758 + H 73 -6.4 -4.26079 | opp_overlap 1601728 CATAATTGCTATAAT TTTATGTATATTAT AAC ATAGTATTCATAAA TTTTAAATAATTTAA TERM 2429 1602285 - 1602271 - H 90 -10 -3.71848 | opp_overlap 1602259 1602270 1602269 TGTGGGTAGTAATAA CTACGC CTT GCGTAG AGCTTTTATAACTTT TERM 2430 1602424 - 1602380 - H 100 -10.4 -4.43832 | opp_overlap 1602386, overlap 1602377 TAATATATAAAAGAA TAAGAAGCCAAATTACTT TTATTATTT AAGTAATTTGGCTTTTTA TATAAATAATTTAAT TERM 2431 1602386 - 1602418 + H 100 -9.4 -4.99035 | opp_overlap 1602380 1602377 ATAAAAGAATAAGAA GCCAAATTACTT TTATTATTT AAGTAATTTGGC TTTTTATATAAATAA TERM 2432 1602861 - 1602851 - g 72 -2.6 -5.49569 | GAGCAATAGAAAAAA TATA TGA TATA GCATCTAATTTGAAA CLI_1522 1602763 - 1603962 + | alcohol dehydrogenase, iron-containing TERM 2433 1604015 - 1603991 - f 79 -7.3 -4.62002 | AGTAATCATAGAAAA GCTTTTATATA GTG TATATGAAAGC AAAAAAATTAATTTA TERM 2434 1604096 - 1604075 - f 70 -4.6 -5.04325 | opp_overlap 1604077 1604088 TGGAAATGATAAAAA TATAAATG TGCTCT CATTTATA TTAAGCCTTCTTAAA TERM 2435 1605076 - 1605088 + G 72 -4.1 -5.11613 | overlap 1605060 AGTTTGAAGATAATA TTCAG GCT CTGGA TTTTTTAAATAGTGT CLI_1523 1604322 - 1606640 + | ATP-dependent protease TERM 2436 1607866 - 1607920 + T 100 -9.9 -4.43669 | gap 1, opp_overlap 1607857 1607872 1607876 1607879, overlap 1607872 1607876 ATATAATATAATTAT TATATATAAATAAGATGATTTCT-AT GCAA ATAAGAAATCATCTTATTTATTTAAA TTTAGTTTTTTACAT TERM 2437 1607872 - 1607914 + T 100 -13.3 -3.91846 | gap 1, opp_overlap 1607872 1607876 1607879, overlap 1607866 1607876 TATAATTATTATATA TAAATAAGATGATTTCT-AT GCAA ATAAGAAATCATCTTATTTA TTTAAATTTAGTTTT TERM 2438 1607914 - 1607872 - T 95 -13.3 -2.98729 | gap 1, opp_overlap 1607872 1607866 1607876, overlap 1607876 1607879 TATAATTATTATATA TAAATAAGATGATTTCT-AT GCAA ATAAGAAATCATCTTATTTA TTTAAATTTAGTTTT TERM 2439 1607876 - 1607910 + T 93 -9.7 -4.53439 | gap 1, opp_overlap 1607872 1607876 1607879, overlap 1607872 1607866 ATTATTATATATAAA TAAGATGATTTCT-AT GCAA ATAAGAAATCATCTTA TTTATTTAAATTTAG TERM 2440 1607910 - 1607876 - T 86 -9.7 -4.15632 | gap 1, opp_overlap 1607876 1607872 1607866, overlap 1607872 1607879 ATTATTATATATAAA TAAGATGATTTCT-AT GCAA ATAAGAAATCATCTTA TTTATTTAAATTTAG TERM 2441 1607907 - 1607879 - T 73 -7 -4.19276 | gap 1, opp_overlap 1607876 1607872 1607866, overlap 1607876 1607872 ATTATATATAAATAA GATGATTTCT-AT GCAA ATAAGAAATCATC TTATTTATTTAAATT npr-1 1609684 - 1607966 - | thermolysin metallopeptidase TERM 2442 1609753 - 1609807 + r 86 -9.1 -4.49041 | opp_overlap 1609744 1609759 1609763 1609766, overlap 1609759 1609763 ATATAATATAATTAT TATATATAAATAAGATGATTTCT TACTTGAAT AGAAATCATCTTATTTATTTAAA TTTAGTTTTTTATAT TERM 2443 1609759 - 1609801 + r 100 -12.5 -3.91846 | opp_overlap 1609759 1609763 1609766, overlap 1609753 1609763 TATAATTATTATATA TAAATAAGATGATTTCT TACTTGAAT AGAAATCATCTTATTTA TTTAAATTTAGTTTT TERM 2444 1609801 - 1609759 - R 90 -12.5 -2.98729 | opp_overlap 1609759 1609753 1609763, overlap 1609763 1609766 TATAATTATTATATA TAAATAAGATGATTTCT TACTTGAAT AGAAATCATCTTATTTA TTTAAATTTAGTTTT TERM 2445 1609763 - 1609797 + r 86 -8.9 -4.53439 | opp_overlap 1609759 1609763 1609766, overlap 1609759 1609753 ATTATTATATATAAA TAAGATGATTTCT TACTTGAAT AGAAATCATCTTA TTTATTTAAATTTAG TERM 2446 1609797 - 1609763 - R 82 -8.9 -4.15632 | opp_overlap 1609763 1609759 1609753, overlap 1609759 1609766 ATTATTATATATAAA TAAGATGATTTCT TACTTGAAT AGAAATCATCTTA TTTATTTAAATTTAG npr-2 1611632 - 1609854 - | thermolysin metallopeptidase TERM 2447 1611366 - 1611383 + g 78 -4.1 -5.40072 | overlap 1611367 ATCTTTTAAAGTTTT AGTACTC TTAA GAGTACC TTTTTTTACCCCAAA TERM 2448 1611367 - 1611382 + g 74 -7.6 -3.83561 | overlap 1611366 TCTTTTAAAGTTTTA GTACTC TTAA GAGTAC CTTTTTTTACCCCAA npr-3 1613541 - 1611748 - | thermolysin metallopeptidase TERM 2449 1613275 - 1613292 + g 78 -4.1 -5.40072 | overlap 1613276 ATCTTTTAAAGTTTT AGTACTC TTAA GAGTACC TTTTTTTACCCCAAA TERM 2450 1613276 - 1613291 + g 74 -7.6 -3.83561 | overlap 1613275 TCTTTTAAAGTTTTA GTACTC TTAA GAGTAC CTTTTTTTACCCCAA npr-4 1615441 - 1613657 - | thermolysin metallopeptidase TERM 2451 1615175 - 1615192 + g 78 -4.1 -5.40072 | overlap 1615176 ATCTTTTAAAGTTTT AGTACTC TTAA GAGTACC TTTTTTTACCCCGAA TERM 2452 1615176 - 1615191 + g 74 -7.6 -3.83561 | overlap 1615175 TCTTTTAAAGTTTTA GTACTC TTAA GAGTAC CTTTTTTTACCCCGA TERM 2453 1615474 - 1615521 + r 100 -16.2 -4.56358 | opp_overlap 1615481 TTAATATATTTTTAC TTATAAACCTATTGATATTT ATATAGCA AAATATCAATAGGTTTATAA TTTTATATAGATATA TERM 2454 1615514 - 1615481 - R 93 -9.9 -3.92075 | opp_overlap 1615474 ATTTTTACTTATAAA CCTATTGATATTT ATATAGCA AAATATCAATAGG TTTATAATTTTATAT npr-5 1617306 - 1615561 - | thermolysin metallopeptidase TERM 2455 1617340 - 1617387 + r 100 -15.6 -4.53303 | gap 1, opp_overlap 1617347 ATAGCATATTTTTAC TTATAAACCTATTAATATTTATA TAG TA-AAATATTAATAGGTTTATAA TTTTATATAAGAATA TERM 2456 1617380 - 1617347 - R 86 -9.3 -3.92075 | gap 1, opp_overlap 1617340 ATTTTTACTTATAAA CCTATTAATATTTATA TAG TA-AAATATTAATAGG TTTATAATTTTATAT CLI_1530 1619166 - 1617427 - | bacillolysin TERM 2457 1618684 - 1618695 + g 70 -4.4 -4.98522 | opp_overlap 1618673, overlap 1618675 1618673 GCTATCGCATTTTAT GCTA TCTT TAGC TTTTTCTATAGCATT nadC 1620607 - 1619771 - | nicotinate-nucleotide pyrophosphorylase TERM 2458 1620068 - 1620083 + g 74 -3.3 -5.4505 | AGGGGCATTGTTTTT TGCTA AAGTTA TAGCA TTTTTTATTCCACCA nadB 1621889 - 1620588 - | L-aspartate oxidase TERM 2459 1621847 - 1621831 - G 71 -7.3 -3.70902 | TTTCTTAGATTTAAA GCTGAAT ATA ATCCAGC TACGCCGCTTCCAGC nadA 1622806 - 1621892 - | quinolinate synthetase TERM 2460 1622045 - 1622072 + g 95 -6.4 -5.93252 | GCAGGTCATTCCTTC TCCAGGGAAATA GAAT TGTTTTTCTGGA TTTTTTATTTTTAAC TERM 2461 1623698 - 1623682 - g 70 -5.3 -4.57474 | GGAAGGCAGACAAAA TAAAAAT AGT ATTTTTA GATAACGAGGAAAGC CLI_1534 1623174 - 1624100 + | hypothetical protein hlyIII 1624835 - 1624197 - | hemolysin III TERM 2462 1624443 - 1624463 + g 72 -7 -4.17023 | AGTGGATAGTTTTTC GTATTTAC CAGTT GTAAATAC TTTTAAAATGATTCC TERM 2463 1624896 - 1624951 + r 81 -10.3 -2.53911 | gap 1, opp_overlap 1624891 1624900 1624902 1624913, overlap 1624891 1624913 GGTAAAAGTATGTAC TATACATTAATAAAAAATCACCATTG CTAAC CAATAGTGATTTTTTATTAATG-AGA TAGATTAAACGTTAA TERM 2464 1624948 - 1624900 - R 100 -20.2 -2.82208 | opp_overlap 1624891 1624896 1624913, overlap 1624891 1624902 1624913 AAAGTATGTACTATA CATTAATAAAAAATCACCATTG CTAAC CAATAGTGATTTTTTATTAATG AGATAGATTAAACGT TERM 2465 1624946 - 1624902 - R 100 -17 -2.95476 | opp_overlap 1624896 1624913, overlap 1624900 1624913 AGTATGTACTATACA TTAATAAAAAATCACCATTG CTAAC CAATAGTGATTTTTTATTAA TGAGATAGATTAAAC TERM 2466 1624935 - 1624913 - R 91 -7.1 -5.5353 | opp_overlap 1624913 1624896, overlap 1624902 1624900 TACATTAATAAAAAA TCACCATTG CTAAC CAATAGTGA TTTTTTATTAATGAG TERM 2467 1624913 - 1624935 + r 79 -4.9 -5.5112 | opp_overlap 1624902 1624900 1624913, overlap 1624896 TACATTAATAAAAAA TCACCATTG CTAAC CAATAGTGA TTTTTTATTAATGAG ychF 1626053 - 1624956 - | translation-associated GTPase mraZ 1626746 - 1627216 + | cell division protein MraZ TERM 2468 1627439 - 1627422 - g 88 -4.1 -5.66989 | opp_overlap 1627422, overlap 1627425 GAAATATTAAAAAAA TTATCCC ATAA GGGAAAA TTAATAGGCATAGAT mraW 1627296 - 1628225 + | S-adenosyl-methyltransferase MraW CLI_1539 1628307 - 1628810 + | putative cell division protein FtsL TERM 2469 1629143 - 1629131 - g 78 -6.3 -4.7329 | AAAACTATCTAAAAA TGATG TAG CATCA AAACTTTCAAAAGCA CLI_1540 1628826 - 1631006 + | stage V sporulation protein D TERM 2470 1631017 - 1631061 + F 81 -7.4 -4.81852 | gap 1, opp_overlap 1631019, overlap 1631019 1631056 ATTAATATAATAAAA AATTGGCATGCAGTAATACAG GGTT CTGTG-TATTGCATGCTAATA TTTTGTTAGTTCTAC TERM 2471 1631019 - 1631059 + F 93 -10 -4.01597 | gap 1, opp_overlap 1631019, overlap 1631017 1631056 TAATATAATAAAAAA TTGGCATGCAGTAATACAG GGTT CTGTG-TATTGCATGCTAA TATTTTGTTAGTTCT TERM 2472 1631059 - 1631019 - f 77 -3.4 -5.64304 | gap 1, opp_overlap 1631019 1631017 1631056 TAATATAATAAAAAA TTGGCATGCAGTAATACAG GGTT CTGTGT-ATTGCATGCTAA TATTTTGTTAGTTCT TERM 2473 1632567 - 1632554 - g 72 -5.3 -4.78237 | GATGCCATAAGAAAA GCTAT GGAA ATAGC AAAAGAAAATGATGT murE 1631237 - 1632688 + | UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase murF 1632714 - 1634102 + | UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase TERM 2474 1634289 - 1634276 - g 90 -4.5 -5.72616 | opp_overlap 1634281 AGTCATAGAAAAAAA GCAGG TACC CCTAC TATGGGAGGAGTAAT mraY-2 1634138 - 1635091 + | phospho-N-acetylmuramoyl-pentapeptide-transferase CLI_1544 1635170 - 1636282 + | cell cycle protein FtsW TERM 2475 1636317 - 1636275 - f 84 -9.5 -3.78026 | opp_overlap 1636276 1636287 1636310, overlap 1636276 1636278 1636287 GGCAAACTGAAAATA CTATATAAAAAATAGCAAC ATTTA GTTGCTATTTTTTTTATAT TCTTAAATTAATATT TERM 2476 1636316 - 1636276 - f 91 -13 -2.86093 | opp_overlap 1636276 1636287 1636310, overlap 1636275 1636278 1636287 GCAAACTGAAAATAC TATATAAAAAATAGCAAC ATTTA GTTGCTATTTTTTTTATA TTCTTAAATTAATAT TERM 2477 1636276 - 1636316 + F 95 -13 -3.74928 | opp_overlap 1636276 1636275 1636278 1636287, overlap 1636287 1636310 GCAAACTGAAAATAC TATATAAAAAATAGCAAC ATTTA GTTGCTATTTTTTTTATA TTCTTAAATTAATAT TERM 2478 1636314 - 1636278 - f 87 -11.2 -2.96755 | opp_overlap 1636276 1636287 1636310, overlap 1636276 1636275 1636287 AAACTGAAAATACTA TATAAAAAATAGCAAC ATTTA GTTGCTATTTTTTTTA TATTCTTAAATTAAT TERM 2479 1636287 - 1636305 + F 100 -7.5 -6.12328 | opp_overlap 1636287 1636278 1636276 1636275, overlap 1636276 ATACTATATAAAAAA TAGCAAC ATTTA GTTGCTA TTTTTTTTATATTCT TERM 2480 1636305 - 1636287 - f 100 -7.5 -5.40625 | opp_overlap 1636276 1636287, overlap 1636278 1636276 1636275 ATACTATATAAAAAA TAGCAAC ATTTA GTTGCTA TTTTTTTTATATTCT CLI_1545 1636601 - 1637371 + | cell division protein FtsQ TERM 2481 1637934 - 1637920 - g 77 -7.2 -4.35474 | CAAATAAAAGAATAA CTATAG AAG CTATAG GAAACAAAGACTTAT CLI_1546 1637382 - 1638095 + | hypothetical protein sbp 1638129 - 1638479 + | small basic protein CLI_1548 1638480 - 1639211 + | hypothetical protein CLI_1549 1639304 - 1639975 + | hypothetical protein CLI_1550 1639996 - 1640448 + | hypothetical protein CLI_1551 1640465 - 1640740 + | YGGT family protein TERM 2482 1641225 - 1641241 + G 79 -8 -4.19735 | opp_overlap 1641225 AGATGGATTTAAAAA CTCAGG TAATT CCTGAG TTTAATTTTCAAGAA TERM 2483 1641241 - 1641225 - g 83 -8 -4.67755 | opp_overlap 1641225 AGATGGATTTAAAAA CTCAGG TAATT CCTGAG TTTAATTTTCAAGAA CLI_1552 1640741 - 1641511 + | hypothetical protein divIVA 1641527 - 1642186 + | cell-division initiation protein DivIVA TERM 2484 1642186 - 1642222 + F 100 -14 -2.77109 | opp_overlap 1642187 1642192, overlap 1642192 TATAAAAGAGGATTA ACAAAAGAGTTTTTGC ATATA GCAAAAACTCTTTTGA GTTATGTATAAGTTT TERM 2485 1642221 - 1642187 - f 100 -17.5 -3.3341 | opp_overlap 1642186 1642192, overlap 1642192 ATAAAAGAGGATTAA CAAAAGAGTTTTTGC ATATA GCAAAAACTCTTTTG AGTTATGTATAAGTT TERM 2486 1642192 - 1642216 + F 100 -11.6 -4.3487 | opp_overlap 1642192 1642187, overlap 1642186 AGAGGATTAACAAAA GAGTTTTTGC ATATA GCAAAAACTC TTTTGAGTTATGTAT TERM 2487 1642216 - 1642192 - f 100 -11.6 -4.74215 | opp_overlap 1642186 1642192, overlap 1642187 AGAGGATTAACAAAA GAGTTTTTGC ATATA GCAAAAACTC TTTTGAGTTATGTAT aroB 1642594 - 1643682 + | 3-dehydroquinate synthase mtnN 1643683 - 1644375 + | 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase aroF 1644496 - 1645296 + | 3-deoxy-7-phosphoheptulonate synthase TERM 2488 1645433 - 1645399 - f 77 -6.9 -4.66953 | gap 1, opp_overlap 1645401 1645407, overlap 1645403 TTAATAGGTTAAAAA TAGA-TTAATATAATT ATAA AATTATATTAAATCTA AATTAATATTAAGAA TERM 2489 1645428 - 1645403 - f 72 -7.9 -3.54926 | opp_overlap 1645401 1645407, overlap 1645399 TAGGTTAAAAATAGA TTAATATAATT ATAA AATTATATTAA ATCTAAATTAATATT TERM 2490 1646024 - 1646013 - g 72 -4.4 -5.0925 | overlap 1646019 TGTCAAAAGGAAAAA CTAC AATA GTAG AGAATAAATCTACTA aroA 1645463 - 1646791 + | 3-phosphoshikimate 1-carboxyvinyltransferase CLI_1558 1647008 - 1647631 + | putative RNA polymerase-binding protein DksA TERM 2491 1647683 - 1647740 + F 84 -9.5 -3.66095 | gap 3, opp_overlap 1647700 GCCTATTTATCCGAT GAC-TACCCGCTCTAATACTCCCATCTT CTTCA AAG-TGGGAGTAA-AGAGCGGCTACGTC TTTGGATAACGATTT TERM 2492 1647806 - 1647767 - f 73 -8.8 -2.90615 | gap 1, opp_overlap 1647774, overlap 1647770 1647771 1647773 ATTTCTCCTAAAGGA TAAC-GACTTCTAAGGAGT AAA ACTCCTAAGAATTCTGTTA ATAAGCTTTAGTGGG TERM 2493 1647801 - 1647771 - f 79 -9.8 -2.75769 | opp_overlap 1647774, overlap 1647770 1647767 1647773 CTCCTAAAGGATAAC GACTTCTAAGGAGT AAA ACTCCTAAGAATTC TGTTAATAAGCTTTA TERM 2494 1647774 - 1647798 + F 90 -10.1 -3.71552 | opp_overlap 1647773 1647771 1647770 1647767 CTAAAGGATAACGAC TTCTAAGGAGT AAA ACTCCTAAGAA TTCTGTTAATAAGCT TERM 2495 1647842 - 1647811 - f 89 -10.2 -3.62522 | GAATTCTGTTAATAA GCTTTAGTGGGAGT AAAA ATTCCCTCTAAAGC CCAGAACTCTGTTTA lspA 1648038 - 1648481 + | signal peptidase II CLI_1560 1648485 - 1649402 + | RluA family pseudouridine synthase TERM 2496 1649750 - 1649720 - f 80 -9.8 -2.7736 | opp_overlap 1649723, overlap 1649717 ATCTACACGGAATTA TTATGCCTTTACTC ACA GAGTAAAGGCATTT TTTATCTGATGATTA TERM 2497 1649723 - 1649747 + F 100 -15.9 -5.39721 | opp_overlap 1649720 1649717 TACACGGAATTATTA TGCCTTTACTC ACA GAGTAAAGGCA TTTTTTATCTGATGA TERM 2498 1650034 - 1650023 - g 73 -5.8 -4.5448 | TAGGTATAAAAAGAA GAGG GTAC CCTC TAGCTAAGAGAATAG pyrR-1 1649899 - 1650435 + | pyrimidine regulatory protein PyrR TERM 2499 1650499 - 1650488 - g 75 -4.4 -5.31545 | AATAATATGAAAAAA TACG TAGA CGTA AATGAAAAATTACCT CLI_1562 1650479 - 1651822 + | uracil permease TERM 2500 1652294 - 1652320 + F 70 -6 -4.30885 | opp_overlap 1652294 1652297, overlap 1652287 1652283 ACTCTGTACTCTAAA TAACAAAAGTGC CTA GCATTTTTATTA TTTTGCGTGTGTTTT xth 1652411 - 1653172 + | exodeoxyribonuclease III CLI_1564 1653396 - 1654538 + | putative methyltransferase CLI_1565 1654769 - 1655314 + | hypothetical protein TERM 2501 1655590 - 1655578 - g 93 -5.5 -5.89921 | AGTAGAAGAAAAAAA GGACG ATA CATCC AGTAAGAAAGAATCT modA 1655492 - 1656307 + | molybdate ABC transporter, periplasmic molybdate-binding protein TERM 2502 1656694 - 1656673 - g 79 -7.3 -4.41353 | overlap 1656684 CCATATATATGAAAA TGCAGCAAG AACA CTTGGTGCA AGTGAATGGAGGATT TERM 2503 1656698 - 1656684 - g 80 -8.6 -3.76778 | overlap 1656673 AAAATGCAGCAAGAA CACTTG GTG CAAGTG AATGGAGGATTTTTT modB 1656317 - 1656988 + | molybdate ABC transporter, permease protein TERM 2504 1657202 - 1657163 - f 73 -8.8 -2.90615 | gap 1, opp_overlap 1657170 1657199, overlap 1657166 1657167 1657169 ATTTCTCCTAAAGGA TAAC-GACTTCTAAGGAGT AAA ACTCCTAAGAATTCTGTTA ATAAGCTTCAGAGGG TERM 2505 1657197 - 1657167 - f 79 -9.8 -2.75769 | opp_overlap 1657170, overlap 1657166 1657163 1657169 CTCCTAAAGGATAAC GACTTCTAAGGAGT AAA ACTCCTAAGAATTC TGTTAATAAGCTTCA TERM 2506 1657170 - 1657194 + F 90 -10.1 -3.71552 | opp_overlap 1657169 1657167 1657166 1657163 CTAAAGGATAACGAC TTCTAAGGAGT AAA ACTCCTAAGAA TTCTGTTAATAAGCT TERM 2507 1657238 - 1657207 - f 100 -18.2 -3.62522 | opp_overlap 1657199, overlap 1657226 GAATTCTGTTAATAA GCTTCAGAGGGAAT AAAA ACTCCCTCTGAAGC CAAGAACTCTGTTTA TERM 2508 1657711 - 1657693 - g 72 -7.6 -3.57389 | AAGATTATGATATAA GTTATATA AAG TATATAAC TGAAACATTTAAAAT CLI_1568 1657368 - 1658039 + | putative molybdate ABC transporter, ATP-binding protein CLI_1569 1658093 - 1658662 + | hypothetical protein TERM 2509 1658685 - 1658737 + F 100 -14 -5.44119 | gap 1, opp_overlap 1658702 1658712 ATTTTACTGTAGTTT TTTCAGTGCTTATATGATTTAATAG AAGA TTAA-AAATCATATAAGCACTGAAA TTTTTTTGAAATAAA TERM 2510 1659858 - 1659842 - g 76 -9.5 -3.13788 | opp_overlap 1659838, overlap 1659840 1659833 ACGGAATTTAATATA TCCTTAG AAA CTAAGGA AAAATTATATAAAGA CLI_1570 1659023 - 1659946 + | patatin-like phospholipase family protein TERM 2511 1660100 - 1660122 + F 71 -8.4 -3.02144 | CAGAGGAAGTTTTTA CTCCCACTTT GGA GAAGAGGGAG TATTAGAGCGGATAG CLI_1571 1660247 - 1660402 + | hypothetical protein CLI_1572 1660675 - 1661727 + | putative methylcobalamin:coenzyme M methyltransferase CLI_1573 1661774 - 1663171 + | Na+/H+ antiporter family protein TERM 2512 1663218 - 1663183 - f 73 -7.7 -3.70478 | opp_overlap 1663180 ATAAATTGACTTAAA GGACAAACTCATGAA TAAATT TTTATGTGTTTGTCC TCATACCTTTATTTT TERM 2513 1663476 - 1663462 - g 78 -10 -3.15236 | TAAAGTTATAGCTAA GGGGAA TCT TTCCCC TAAAACAAAAGATGA TERM 2514 1664915 - 1664899 - g 80 -8.7 -3.73072 | AACTTTTGTAGGAAA CTCCTCC ATA GAAGGAG CAAGATTATCTTTAC CLI_1574 1663313 - 1665043 + | iron-sulfur cluster-binding protein TERM 2515 1665672 - 1665653 - g 72 -2.8 -5.46657 | opp_overlap 1665653 GAGTGCAATAAAAAA GCCAGTAT AAAA ACATTGGC CTTTGAAGAATTTAA CLI_1575 1665131 - 1666060 + | CobW/P47K family protein CLI_1576 1666083 - 1666955 + | putative methylcobalamin:coenzyme M methyltransferase TERM 2516 1667122 - 1667112 - g 74 -8.2 -3.61983 | TGAAGCTATAGATAA GGGC CTT GCCC ATGGAATGAATAGAG mtbC 1666981 - 1667643 + | dimethylamine corrinoid protein CLI_1578 1667728 - 1668750 + | methylcobalamin:coenzyme M methyltransferase TERM 2517 1669189 - 1669176 - f 75 -3.9 -5.49729 | opp_overlap 1669176 AAGGACTTAAAAAAA TTTTC GATA GAAAA TTAATGCGGTATCAT TERM 2518 1669615 - 1669598 - f 76 -2.1 -5.86609 | TTAAAAAAATAAAAA TTATACT TTAA AATATAA ATATATTAAAAATAA CLI_1579 1669697 - 1670767 + | putative methylcobalamin:coenzyme M methyltransferase CLI_1580 1670790 - 1671752 + | methionine ABC transporter ATP-binding protein TERM 2519 1672062 - 1672032 - g 82 -7.7 -4.51378 | opp_overlap 1672040 ATCTATAGGAGAAAA TGCAGCCATAGTT CCTTT AACTATAGCTTCA GCACCTTTTATAGCT CLI_1581 1671754 - 1672410 + | methionine ABC transporter permease TERM 2520 1672470 - 1672436 - f 85 -6 -5.47821 | opp_overlap 1672444, overlap 1672426 ATCTATTTAAAAAAA TTTAAAGCTATAGTTA ACT TAACTATATTTTTAAA TAAATATATACATAG TERM 2521 1672444 - 1672462 + F 83 -7.6 -4.67755 | opp_overlap 1672436 AAAAAAATTTAAAGC TATAGTTA ACT TAACTATA TTTTTAAATAAATAT CLI_1582 1672541 - 1673359 + | NLPA family lipoprotein TERM 2522 1673394 - 1673446 + T 73 -4.6 -5.11063 | gap 2, opp_overlap 1673405, overlap 1673402 1673405 TCACAATTCCTATTG TTAAATACAAAGATACCTCTAAACTG TTA TAGTTTGGAGGTATCTTA-T-TTTAG TTTTTATTCAATCCT TERM 2523 1673402 - 1673440 + T 100 -13.4 -4.86293 | opp_overlap 1673405, overlap 1673394 1673405 CCTATTGTTAAATAC AAAGATACCTCTAAACTG TTA TAGTTTGGAGGTATCTTA TTTTAGTTTTTATTC TERM 2524 1673405 - 1673437 + T 100 -15.1 -4.47007 | opp_overlap 1673405, overlap 1673402 1673394 ATTGTTAAATACAAA GATACCTCTAAACTG TTA TAGTTTGGAGGTATC TTATTTTAGTTTTTA TERM 2525 1673437 - 1673405 - T 100 -12.2 -4.33258 | opp_overlap 1673402 1673394 1673405 ATTGTTAAATACAAA GATACCTCTAAACT GTTAT AGTTTGGAGGTATC TTATTTTAGTTTTTA CLI_1583 1674019 - 1673450 - | MORN repeat-containing protein TERM 2526 1674193 - 1674209 + H 81 -5.3 -5.2894 | opp_overlap 1674193 1674202 1674204, overlap 1674197 ATAGATTTTATTAAT TTTTTAT AAT ATAAAAA TTTTATTTTATATTT TERM 2527 1674197 - 1674221 + H 86 -4.5 -5.94214 | opp_overlap 1674193 1674202 1674204, overlap 1674193 ATTTTATTAATTTTT TATAATATAAA AAT TTTATTTTATA TTTTTTTGTTATATT TERM 2528 1675050 - 1675070 + G 75 -4.7 -5.08824 | opp_overlap 1675052, overlap 1675052 TTTTGATGGAATTCA AATTCATGG AGC CCATGGATA TTTTTTAAGTAGAAC TERM 2529 1675052 - 1675068 + G 75 -7.3 -4.17608 | opp_overlap 1675052, overlap 1675050 TTGATGGAATTCAAA TTCATGG AGC CCATGGA TATTTTTTAAGTAGA CLI_1584 1674598 - 1675617 + | oxidoreductase, FAD/FMN-binding TERM 2530 1675667 - 1675620 - f 80 -8.1 -4.28656 | gap 1, opp_overlap 1675629, overlap 1675624 ATTTAATATGTAAAA TAAATATAAGGATGGGGAATGT AAGTA AAATTCTCCATCCTT-TATTTA TGTAAACATTATTTT TERM 2531 1675629 - 1675659 + F 89 -9.1 -4.62441 | opp_overlap 1675624 1675620 GTAAAATAAATATAA GGATGGGGAATGT AAGTA AAATTCTCCATCC TTTATTTATGTAAAC asnA 1675945 - 1676967 + | asparagine synthetase AsnA TERM 2532 1677003 - 1677060 + T 100 -13.8 -3.34705 | opp_overlap 1677003, overlap 1677015 GTAATTATTAAATGA TTCTAAGGTTTAGATGGAGTTCTATT ATGAAA AATAGCTCTCCATCTTAATCTTAGAA TCATTTTTATAATAT TERM 2533 1677060 - 1677003 - T 90 -11.6 -2.99951 | opp_overlap 1677003 1677015 GTAATTATTAAATGA TTCTAAGGTTTAGATGGAGTTCTATT ATGAAA AATAGCTCTCCATCTTAATCTTAGAA TCATTTTTATAATAT CLI_1586 1678640 - 1677075 - | oxidoreductase, FAD dependent TERM 2534 1678249 - 1678263 + g 72 -8.6 -2.91735 | ATATAAGCAGGGAGT CTGTGA AAA TCACAG TCTATAGAATATTCA CLI_1587 1678998 - 1680857 + | DNA topoisomerase CLI_1588 1680884 - 1682797 + | MutS domain-containing protein TERM 2535 1682850 - 1682904 + F 100 -12.7 -5.29782 | gap 1, opp_overlap 1682853 1682858, overlap 1682851 1682858 ATATTTAATCTTAAT G-TAGAAAATACACTTCATAAGTTTA GTAG TATGCTTATGAAGTGTATTTTTTATC TTTTTTATAAATATA TERM 2536 1682851 - 1682902 + F 100 -16.4 -4.2748 | opp_overlap 1682853 1682858, overlap 1682850 1682858 TATTTAATCTTAATG TAGAAAATACACTTCATAAGTTTA GTAG TATGCTTATGAAGTGTATTTTTTA TCTTTTTTATAAATA TERM 2537 1682900 - 1682853 - f 78 -10.2 -2.55074 | opp_overlap 1682851 1682850 1682858, overlap 1682858 TTTAATCTTAATGTA GAAAATACACTTCATAAGTTTA GTAG TATGCTTATGAAGTGTATTTTT TATCTTTTTTATAAA TERM 2538 1682858 - 1682895 + F 100 -12.3 -5.72118 | opp_overlap 1682853 1682858, overlap 1682851 1682850 TCTTAATGTAGAAAA TACACTTCATAAGTTTA GTAG TATGCTTATGAAGTGTA TTTTTTATCTTTTTT TERM 2539 1682895 - 1682858 - f 100 -10.1 -4.4715 | opp_overlap 1682858 1682851 1682850, overlap 1682853 TCTTAATGTAGAAAA TACACTTCATAAGTTTA GTAG TATGCTTATGAAGTGTA TTTTTTATCTTTTTT CLI_1589 1683114 - 1684250 + | aldo/keto reductase family oxidoreductase TERM 2540 1684242 - 1684277 + T 100 -19.4 -4.66388 | opp_overlap 1684238, overlap 1684231 GTAGTTAAAACTTTT GAACCTTAACAAATTG TTTG CAATTTGTTAAGGTTC TTTCTTTGTAATTTT CLI_1590 1684799 - 1684308 - | hypothetical protein TERM 2541 1684992 - 1684977 - H 73 -7.6 -3.77789 | overlap 1684975 ATTGAAAAAAATATA TTGACC CTAT GGTCAA CGGGTGATAATATAT CLI_1591 1685036 - 1685734 + | peptide ABC transporter ATP-binding protein TERM 2542 1686276 - 1686254 - g 100 -9.2 -5.47218 | opp_overlap 1686244, overlap 1686256 TGGGATGCAAAAAAA TTTGGCATAG CTT CTATGCCAGA GGAAGATATGAAAAA TERM 2543 1686274 - 1686256 - g 90 -11.8 -2.91842 | opp_overlap 1686244, overlap 1686254 GGATGCAAAAAAATT TGGCATAG CTT CTATGCCA GAGGAAGATATGAAA TERM 2544 1687707 - 1687721 + G 76 -8.6 -3.45033 | opp_overlap 1687698 1687707 1687709, overlap 1687718 CACTAATACTAGATA CAGGAA AAA TTCCTG TTATAATAGGTTATC TERM 2545 1687721 - 1687707 - g 72 -8.6 -3.01637 | opp_overlap 1687707 1687718, overlap 1687698 1687709 CACTAATACTAGATA CAGGAA AAA TTCCTG TTATAATAGGTTATC CLI_1592 1685735 - 1687945 + | efflux ABC transporter, permease protein CLI_1593 1687957 - 1688580 + | TetR family transcriptional regulator TERM 2546 1688665 - 1688706 + F 70 -4.1 -5.10933 | gap 1 AAATGAGTTAGTTTA TAGATTTAATTTTTTATACT TGG GGTGTTAAA-ATTAAATCTA TTTTATTTTGAGTGA CLI_1594 1688941 - 1689492 + | hypothetical protein TERM 2547 1690205 - 1690174 - g 83 -7.6 -4.62471 | AATTTATATATAAAA CCTAAAAATTTA TTTGTAGC TAAATTTTTAGG AAATCCACCTATAAA CLI_1595 1689505 - 1690602 + | carbohydrate ABC transporter ATP-binding protein CLI_1596 1690595 - 1691488 + | carbohydrate ABC transporter permease CLI_1597 1691524 - 1692348 + | carbohydrate ABC transporter permease CLI_1598 1692394 - 1693755 + | carbohydrate ABC transporter periplasmic-binding protein ldh 1694935 - 1693979 - | L-lactate dehydrogenase CLI_1600 1695457 - 1696167 + | GntR family transcriptional regulator TERM 2548 1696169 - 1696189 + T 75 -5.5 -5.0925 | AAATCACTACTTAAA GTACTATGT ATT ATATAGTGC TTTTTCATTTTAAAG CLI_1601 1696907 - 1696419 - | redox family protein TERM 2549 1697711 - 1697727 + G 79 -7.3 -4.44667 | opp_overlap 1697711, overlap 1697712 CCAACTATCGCAATA TTTGCAG CAC CTGCAAG TTTATTATTAGCAGG TERM 2550 1697712 - 1697726 + G 74 -8.6 -3.26318 | opp_overlap 1697711, overlap 1697711 CAACTATCGCAATAT TTGCAG CAC CTGCAA GTTTATTATTAGCAG CLI_1602 1697141 - 1698088 + | C4-dicarboxylate transporter/malic acid transport protein CLI_1603 1698321 - 1698160 - | hypothetical protein TERM 2551 1698292 - 1698234 - G 74 -6.3 -4.41348 | gap 1, opp_overlap 1698242 1698243, overlap 1698235 1698240 1698241 TTGGTGCGAAAGAAA GCATAACTTTTACCCATTCCCTTTTAAA TCCT CTTAAAAGGGAATGGGTAAGTTTTTTG- CTATCTTTCTTATAA TERM 2552 1698292 - 1698235 - G 100 -12.3 -3.24488 | opp_overlap 1698242 1698243, overlap 1698234 1698240 1698241 TGGTGCGAAAGAAAG CATAACTTTTACCCATTCCCTTTTAAA TCCT CTTAAAAGGGAATGGGTAAGTTTTTTG CTATCTTTCTTATAA TERM 2553 1698285 - 1698240 - G 95 -11.6 -3.72242 | gap 2, opp_overlap 1698242 1698243, overlap 1698234 1698235 1698241 CGAAAGAAAGCATAA CTTTTACCCATTCCCTTTTAAA TCCT CTTAAAAGGGAATGGGTAA--G TTTTTTGCTATCTTT TERM 2554 1698286 - 1698241 - G 100 -14.3 -2.82261 | opp_overlap 1698242 1698243, overlap 1698240 1698234 1698235 GAAAGAAAGCATAAC TTTTACCCATTCCCTTTTAAA TCCT CTTAAAAGGGAATGGGTAAGT TTTTTGCTATCTTTC TERM 2555 1698242 - 1698285 + g 100 -19.3 -5.28755 | opp_overlap 1698240 1698241 1698234 1698235, overlap 1698243 AAAGAAAGCATAACT TTTACCCATTCCCTTTTAA ATCCTC TTAAAAGGGAATGGGTAAG TTTTTTGCTATCTTT TERM 2556 1698243 - 1698284 + g 100 -20.6 -3.74813 | opp_overlap 1698240 1698241 1698234 1698235, overlap 1698242 AAGAAAGCATAACTT TTACCCATTCCCTTTTAA ATCCTC TTAAAAGGGAATGGGTAA GTTTTTTGCTATCTT TERM 2557 1698326 - 1698355 + H 89 -9.5 -4.33274 | opp_overlap 1698324 1698322 1698319 1698326 AAAAATAACAATAGA TATCTTAGGAAAA AATT TTATCCTAAGATA TTTTGATGATGTCAA TERM 2558 1698355 - 1698326 - H 82 -9.5 -3.42301 | opp_overlap 1698326, overlap 1698324 1698322 1698319 AAAAATAACAATAGA TATCTTAGGAAAA AATT TTATCCTAAGATA TTTTGATGATGTCAA TERM 2559 1698432 - 1698445 + H 73 -2.5 -5.63504 | TAAAACCTTGCTAAT TTTAT TTCC ATAAA TTTTTTTGTACACTT TERM 2560 1700495 - 1700475 - g 70 -8.3 -3.06815 | AGTGCTGTTAATATA TCCATCTCC TTT GGATATGGA ACTAAGAAGAAAGAA CLI_1604 1698951 - 1701149 + | putative sensory box-containing diguanylate cyclase CLI_1605 1701257 - 1701604 + | hypothetical protein TERM 2561 1702879 - 1702860 - g 78 -6.4 -4.82901 | TCTTTTGTAGAAAAA GCAGAGCT TACA AGATCTGC AAATAGTATAGGTCT CLI_1606 1701972 - 1704044 + | methyl-accepting chemotaxis protein TERM 2562 1704071 - 1704046 - f 81 -7.9 -4.47679 | opp_overlap 1704042, overlap 1704042 AATTCAAAATATAAA TAATTTATTAT AATT ATAATAAATTA AACTGTGGTGGCACT TERM 2563 1704102 - 1704133 + F 100 -12.6 -5.90231 | gap 1, opp_overlap 1704109 1704110, overlap 1704091 TATAGAAACCTTTGA CATGAAAGTTTCCTT TTT AAGGAA-CTTTCATG TTTTTTTATATTTAT TERM 2564 1704204 - 1704229 + F 74 -6.3 -4.66537 | opp_overlap 1704210, overlap 1704210 AAATATTACAATATA AAAAAAGGTAA TATA TTACCTTTTTA TTTTCTATTAGGAGG TERM 2565 1704223 - 1704210 - f 90 -5.3 -5.84432 | opp_overlap 1704204 1704210 TACAATATAAAAAAA GGTAA TATA TTACC TTTTTATTTTCTATT TERM 2566 1704210 - 1704223 + F 82 -5.3 -5.60556 | opp_overlap 1704210, overlap 1704204 TACAATATAAAAAAA GGTAA TATA TTACC TTTTTATTTTCTATT CLI_1607 1704251 - 1704718 + | MarR family transcriptional regulator CLI_1608 1704744 - 1705286 + | hypothetical protein CLI_1609 1705788 - 1705435 - | putative transcriptional regulator CLI_1610 1706183 - 1706548 + | glyoxalase family protein ogt 1706577 - 1707047 + | methylated-DNA--protein-cysteine methyltransferase TERM 2567 1707281 - 1707292 + G 71 -5.8 -4.49311 | AGAAGTTCATTAGCA GGGT TTTT ACCC TTTTATAATAGTAAT CLI_1612 1707074 - 1708291 + | AraC family transcriptional regulator TERM 2568 1708375 - 1708331 - f 88 -8.1 -4.8048 | opp_overlap 1708337, overlap 1708332 1708337 CGTTTACATTAAAAA GTAAAAGCAGTATGATTAATT TGT AGTCAATCATACTGCTTTTTA TTTTAAGATAATATT TERM 2569 1708374 - 1708332 - f 95 -11.6 -3.47806 | opp_overlap 1708337, overlap 1708331 1708337 GTTTACATTAAAAAG TAAAAGCAGTATGATTAATT TGT AGTCAATCATACTGCTTTTT ATTTTAAGATAATAT TERM 2570 1708337 - 1708369 + F 100 -11.5 -5.46706 | opp_overlap 1708332 1708331 1708337 CATTAAAAAGTAAAA GCAGTATGATTAATT TGT AGTCAATCATACTGC TTTTTATTTTAAGAT TERM 2571 1708369 - 1708337 - f 100 -11.5 -4.80167 | opp_overlap 1708337, overlap 1708332 1708331 CATTAAAAAGTAAAA GCAGTATGATTAATT TGT AGTCAATCATACTGC TTTTTATTTTAAGAT CLI_1613 1708456 - 1709664 + | hypothetical protein CLI_1614 1709689 - 1710519 + | hypothetical protein TERM 2572 1710565 - 1710615 + F 100 -16.6 -2.84098 | opp_overlap 1710571, overlap 1710571 TTTTTAGCATGATTT TTAAAACACAATTCCAATGGAAAT TTT ATTTTCACTGGAATTGTGTTTTTA TAATTAATTAAGACC TERM 2573 1710609 - 1710571 - f 100 -15.6 -4.12188 | opp_overlap 1710571 1710565 GCATGATTTTTAAAA CACAATTCCAATGGAAAT TTT ATTTTCACTGGAATTGTG TTTTTATAATTAATT TERM 2574 1710571 - 1710609 + F 100 -15.6 -5.00765 | opp_overlap 1710571, overlap 1710565 GCATGATTTTTAAAA CACAATTCCAATGGAAAT TTT ATTTTCACTGGAATTGTG TTTTTATAATTAATT CLI_1615 1710908 - 1712020 + | putative DNA-binding protein TERM 2575 1712103 - 1712092 - f 78 -4.4 -5.46129 | TAATAAATTAAAAAA TCCT AGAT AGGA AATAATGGATAGAAT TERM 2576 1712287 - 1712314 + F 100 -8.5 -5.38951 | opp_overlap 1712287 1712288, overlap 1712304 AGGAAGGATTAAATA CCTGTGGGACA GTAAAA TGTTCTACAGG TTTTTTATATAAATT TERM 2577 1712525 - 1712512 - g 91 -5.3 -5.81412 | opp_overlap 1712522 TGTAGTTAAAAAAAA GGAAA GCTT TTTCC ACAAAATGTTGAATG TERM 2578 1712714 - 1712679 - g 71 -5.6 -4.36127 | TTCAAGAATGGAAAA CTGACAAAACTTTGAA TGCA TTAAAAGATTTATCAG CTCCTCATATTAAAG TERM 2579 1713253 - 1713271 + G 72 -4.6 -4.88067 | overlap 1713255 GATTCCAGAAGAATT TCCAGTTA TTC TAACTGTA TTTTTATCAATGGGT TERM 2580 1713255 - 1713269 + G 75 -7.2 -4.06182 | overlap 1713253 TTCCAGAAGAATTTC CAGTTA TTC TAACTG TATTTTTATCAATGG TERM 2581 1714703 - 1714713 + G 70 -5.4 -4.55491 | GTCCAAGTAAATACT TCAG ATT CTGA TTTTGTAGTTAAATC CLI_1616 1712411 - 1714945 + | hypothetical protein TERM 2582 1715358 - 1715307 - g 93 -11.3 -3.49102 | opp_overlap 1715305 1715356 AGATGTTCTATACAA TGCAGTTAAATCTATTGTTTT CTTTAAGGCC AAAACACCAGATTTAACTGCA GCTATAGTTGCTATT CLI_1617 1715002 - 1715871 + | cation efflux family protein TERM 2583 1716206 - 1716225 + F 100 -8.6 -5.75538 | opp_overlap 1716204 1716205 ATAAAAACATGAATT GTGGTACA ACTA TGTGCCAC TTTTTATTTTTTAAA CLI_1618 1716357 - 1717760 + | amino acid/peptide transporter CLI_1619 1718197 - 1718556 + | putative iron-dependent repressor TERM 2584 1718907 - 1718894 - g 72 -6.7 -4.10007 | opp_overlap 1718893 AGAATTCCTTTAAAA GATGC AAGT GCATC AATTTTAGCTCAAAT CLI_1620 1718654 - 1719061 + | hypothetical protein CLI_1621 1719442 - 1720296 + | HDIG domain-containing protein TERM 2585 1720690 - 1720635 - T 78 -6.4 -4.90079 | opp_overlap 1720648 1720678, overlap 1720648 AGCTGAACAATAAAA TAAGTAATTTAAATAGCCCTAGAAAT TATA ATTTCTAGGGCTATTTTTATATTTTA AAGTAAAATTAAAAA TERM 2586 1720677 - 1720648 - T 100 -16.7 -3.827 | opp_overlap 1720648, overlap 1720635 AATAAGTAATTTAAA TAGCCCTAGAAAT TATA ATTTCTAGGGCTA TTTTTATATTTTAAA TERM 2587 1720648 - 1720677 + T 100 -16.7 -5.28983 | opp_overlap 1720635 1720648 AATAAGTAATTTAAA TAGCCCTAGAAAT TATA ATTTCTAGGGCTA TTTTTATATTTTAAA CLI_1623 1723404 - 1720768 - | cation-transporting ATPase, P-type TERM 2588 1720793 - 1720803 + g 75 -4 -5.30616 | opp_overlap 1720793, overlap 1720787 TTTGCTAGAGAATGA CTTA AAT TAAG TTTTTCTTTAAATAC TERM 2589 1722252 - 1722263 + g 88 -4.4 -5.67967 | CAAAAGCTATTTCAG TAGG GTCA CCTA TTTTTTTATCCTGCT TERM 2590 1723530 - 1723544 + H 73 -4.4 -5.1848 | AAAGTTATATATTAT TAAAAA TTA TTTTTA TTTTTTAGCTTGGTT TERM 2591 1723725 - 1723680 - H 100 -18.2 -5.68438 | opp_overlap 1723682 1723691 1723694 CTAGCAAATAAAAAA GACTTTTAATATAATTCTTT TTATTT AAAGAATTATATTAAAAGTC TTGCAACCAAACTTT TERM 2592 1723682 - 1723723 + H 100 -15 -3.01791 | opp_overlap 1723680, overlap 1723691 1723694 AGCAAATAAAAAAGA CTTTTAATATAATTCTTT TTATTT AAAGAATTATATTAAAAG TCTTGCAACCAAACT TERM 2593 1724086 - 1724061 - H 71 -8.5 -2.95449 | opp_overlap 1724066, overlap 1724060 1724064 AAAAATAATTGAAAT TAATATGACAC ACAG ATGTCATATTA CCAATGTTATGATTA CLI_1624 1724320 - 1724634 + | hypothetical protein TERM 2594 1724656 - 1724686 + T 100 -9.9 -4.41137 | opp_overlap 1724656 TTTATTTGCAATTAA GAGCATTTAATCT TAGAT GGATTAAGTGCTC TTTGTTATCATTATG CLI_1625 1725290 - 1724850 - | hypothetical protein CLI_1626 1725729 - 1725304 - | hypothetical protein CLI_1627 1725845 - 1726537 + | cyclic nucleotide-binding domain-containing protein TERM 2595 1726603 - 1726588 - f 77 -7.6 -4.15508 | opp_overlap 1726588, overlap 1726575 AATCAACCTTTAAAA TCAACC GAAA GGTTGA TTTTTTTTGTGAAAG TERM 2596 1726588 - 1726603 + F 100 -7.6 -5.93809 | opp_overlap 1726575 1726588 AATCAACCTTTAAAA TCAACC GAAA GGTTGA TTTTTTTTGTGAAAG TERM 2597 1727296 - 1727276 - g 72 -6.9 -4.0847 | opp_overlap 1727279, overlap 1727279 CAGACAGAATAATAA TAATGGATC ATG GAACCATTA TAGCTGAAGGAACCA CLI_1628 1726657 - 1727595 + | ABC transporter, ATP-binding protein CLI_1629 1727606 - 1728349 + | ABC transporter, permease protein CLI_1630 1728349 - 1729338 + | ABC transporter, permease protein TERM 2598 1729513 - 1729495 - g 71 -7.5 -3.79506 | overlap 1729487 1729483 AAGTAAACTTAATAA GGACTAA GCTTA TTAGTCC AATGCCAAGAAAAAA TERM 2599 1729946 - 1729956 + G 72 -2.6 -5.47218 | GTATTCATCTTCTAA TATA CAT TATA TTTTTTTAACTAGAG TERM 2600 1731498 - 1731473 - g 72 -4.9 -4.95302 | opp_overlap 1731476, overlap 1731476 TGAAAGACAACAAAA GAATTCTAATA CTTA TATTAGAATTG ATGAAAAGATTACTT TERM 2601 1731495 - 1731476 - g 78 -6.6 -4.53142 | opp_overlap 1731476, overlap 1731473 AAGACAACAAAAGAA TTCTAATA CTTA TATTAGAA TTGATGAAAAGATTA TERM 2602 1731931 - 1731909 - g 87 -10.8 -3.42283 | overlap 1731907 GAAGTGATGGAAATA TTATTTGAAG GAG CTTCAAATAA GCAGATTGGAAAAAG CLI_1631 1729470 - 1732067 + | LuxR family transcriptional regulator TERM 2603 1732099 - 1732047 - T 70 -2.9 -5.59879 | opp_overlap 1732050 1732062 1732095 1732096, overlap 1732040 1732053 1732062 GAGAAATATAAAAAA TTTAAAGCCATAAAATATTAATACT TAA AGTAGTAATATTTTATGGCAACTAG CTTAGTATATTAATA TERM 2604 1732093 - 1732053 - T 100 -17.3 -4.08285 | opp_overlap 1732050 1732062, overlap 1732047 1732062 TATAAAAAATTTAAA GCCATAAAATATTAATACT TAA AGTAGTAATATTTTATGGC AACTAGCTTAGTATA TERM 2605 1732095 - 1732124 + T 90 -7.3 -5.27923 | opp_overlap 1732047 1732099, overlap 1732050 1732096 TAATATTTTATGGCA ACTAGCTTAGTAT ATTA ATATTAAGCTAGC TTTTTTATAAAATTG TERM 2606 1732096 - 1732123 + T 91 -10.8 -3.75669 | opp_overlap 1732047 1732099, overlap 1732095 AATATTTTATGGCAA CTAGCTTAGTAT ATTA ATATTAAGCTAG CTTTTTTATAAAATT CLI_1632 1732869 - 1732147 - | transcription activator effector binding domain-containing protein CLI_1633 1733871 - 1732927 - | hypothetical protein TERM 2607 1734126 - 1734141 + H 88 -4.7 -5.84381 | AAAACTAGGACGTAG CTACC GCCTTA GGTAG TTTTTTTGTTGATGG TERM 2608 1734155 - 1734169 + H 100 -10 -5.63517 | AGTTTTTTTGTTGAT GGGCAT TTA ATGCCC TTTTTTATTTGCAAA TERM 2609 1734172 - 1734200 + H 73 -3.3 -5.48213 | overlap 1734174 GCATTTAATGCCCTT TTTTATTTGCAAA AAA TTTACAAATAGGA TTTTTGTTTTAGGTG CLI_1634 1734495 - 1735490 + | putative 2-hydroxyglutaryl-CoA dehydratase subunit TERM 2610 1735645 - 1735673 + G 78 -10.6 -2.70932 | opp_overlap 1735643 1735648, overlap 1735648 TGGAAGTAGAGAAGT TAAGATTGTTTT AATGG AAAACAATCTTA TAGTTAAAAAGAAAA TERM 2611 1735648 - 1735670 + G 71 -7.9 -3.50853 | opp_overlap 1735643 1735648, overlap 1735645 AAGTAGAGAAGTTAA GATTGTTTT AATGG AAAACAATC TTATAGTTAAAAAGA hgdC-1 1735607 - 1736368 + | 2-hydroxyglutaryl-CoA dehydratase component A CLI_1636 1736386 - 1736817 + | putative 6-pyruvoyl tetrahydropterin synthase CLI_1637 1736819 - 1737484 + | radical SAM domain-containing protein folE 1737488 - 1738078 + | GTP cyclohydrolase I CLI_1639 1738262 - 1738921 + | ExsB protein TERM 2612 1738938 - 1738956 + F 83 -3.9 -5.88565 | GTTAATTTAGGAGGA CTAGTAT GCTAA GTACTAG TTTTTTTATTGTGAA CLI_1640 1739215 - 1740033 + | CAAX amino terminal protease family protein TERM 2613 1740079 - 1740096 + F 78 -8.5 -3.95047 | ATAATAATTTTATAT GTATTGC TTGA GCAATAC TTCCTTTTTATATTT TERM 2614 1740922 - 1740909 - g 70 -3.9 -5.0133 | GAGCCCTTGAAAAAA TAGAA GAAG TTCTA GATTCATTTAACAGA CLI_1641 1740182 - 1741138 + | methyl-accepting chemotaxis protein CLI_1642 1741313 - 1742065 + | hypothetical protein TERM 2615 1742146 - 1742169 + F 100 -9.7 -5.09225 | opp_overlap 1742143 1742148 AAAAGGAATTTATAG GACTAAGTC AACAGA GACTTAGTC TTTTTTAGATAGAGT TERM 2616 1742718 - 1742732 + G 93 -5.8 -5.68039 | opp_overlap 1742717 AAAAAATCCAATCAT TAAGAT TTT ATCTTA TTTTTTTATGGATTT CLI_1643 1742386 - 1742802 + | hypothetical protein CLI_1644 1742827 - 1743765 + | putative deoxyribonucleoside regulator TERM 2617 1743963 - 1743920 - f 95 -11.4 -3.53031 | opp_overlap 1743918 1743916 1743928, overlap 1743928 TTTACTTTAAAGTAA TATTAGAACAAAAGAAAAAA CTAA TATTTACTTTTGTTCTAATA AGTGCTATTATGAGG deoC 1744057 - 1744695 + | deoxyribose-phosphate aldolase TERM 2618 1744742 - 1744711 - f 95 -11.9 -3.68662 | opp_overlap 1744711, overlap 1744702 ACATAATATTGTAAA TTGTTAATCTGTT TTTTAT AACAGATTAACAA TTTATGGAATTTAAA TERM 2619 1744711 - 1744742 + F 100 -11.9 -3.95219 | opp_overlap 1744702 1744711 ACATAATATTGTAAA TTGTTAATCTGTT TTTTAT AACAGATTAACAA TTTATGGAATTTAAA rbsK 1744883 - 1745794 + | ribokinase TERM 2620 1745847 - 1745868 + F 83 -3.7 -5.86976 | TTTTGAAAACAAAGA CTCCTATAT ATTA GTGTAGGGG TTTTTTGTTTTGTGG CLI_1647 1746250 - 1747518 + | ATP phosphoribosyltransferase regulatory subunit TERM 2621 1747677 - 1747654 - g 74 -5.4 -4.87052 | GATAAAGGAAGAAAA CTCATTTTTA ATTG TGAAAATGAG GAATATAATATAGAG hisG 1747543 - 1748181 + | ATP phosphoribosyltransferase catalytic subunit TERM 2622 1749149 - 1749135 - g 90 -7.2 -5.4492 | TATACAGATAAAAAA TCTTTC AAG GAAAGA AATAATACGTACATC hisD 1748260 - 1749570 + | histidinol dehydrogenase hisB 1749714 - 1750304 + | imidazoleglycerol-phosphate dehydratase hisH 1750432 - 1751037 + | imidazole glycerol phosphate synthase subunit HisH hisA 1751034 - 1751762 + | phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase hisC 1751759 - 1752823 + | histidinol-phosphate aminotransferase hisF 1753009 - 1753770 + | imidazoleglycerol phosphate synthase, cyclase subunit TERM 2623 1754596 - 1754574 - f 70 -5 -4.79683 | AACTGATAAAAGAAA TATGTGAT TTAACCT ATCACATA ATGGTTTTAATGGCA CLI_1656 1754845 - 1755540 + | hypothetical protein CLI_1657 1755554 - 1755775 + | hypothetical protein CLI_1658 1755793 - 1756320 + | hypothetical protein TERM 2624 1756346 - 1756298 - T 93 -12.3 -3.2794 | opp_overlap 1756300, overlap 1756300 1756305 1756308 TTGTAGGTACATTAA TATTAAAGAAGTTTATATTAT AAAATAG ATAATATAAACTTCTTTAATT TTTATTAGCAGAATC TERM 2625 1756300 - 1756344 + T 100 -14.9 -5.06414 | opp_overlap 1756300 1756298 1756305 1756308 GTAGGTACATTAATA TTAAAGAAGTTTATATTAT AAAATAG ATAATATAAACTTCTTTAA TTTTTATTAGCAGAA TERM 2626 1756344 - 1756300 - T 100 -14.9 -3.20573 | opp_overlap 1756300, overlap 1756298 1756305 1756308 GTAGGTACATTAATA TTAAAGAAGTTTATATTAT AAAATAG ATAATATAAACTTCTTTAA TTTTTATTAGCAGAA TERM 2627 1756339 - 1756305 - T 95 -10.4 -3.96093 | opp_overlap 1756300, overlap 1756300 1756298 1756308 TACATTAATATTAAA GAAGTTTATATTAT AAAATAG ATAATATAAACTTC TTTAATTTTTATTAG CLI_1659 1757241 - 1756351 - | LysR family transcriptional regulator TERM 2628 1758515 - 1758531 + G 77 -7.3 -4.31085 | TATGTTTTTTTTAAC CTGTGGT TTT ACTACAG TTTTAAGTTCCTATC CLI_1660 1757505 - 1758755 + | sodium:alanine symporter family protein TERM 2629 1759733 - 1759713 - g 72 -4.8 -4.87665 | CCCTAGCTAGAAAAA CTACTAAA CTACC TTTAGCAG GACCTGCTCAGAAAG CLI_1661 1758836 - 1760536 + | pyridine nucleotide-disulphide oxidoreductase family protein CLI_1662 1760689 - 1761945 + | hypothetical protein TERM 2630 1762067 - 1762028 - f 100 -10.4 -4.81357 | gap 1, opp_overlap 1762028 ATATTATAAAAGAAA TCACTAAAAATCAACTATA GAC TA-AGTTGGTTTTTAGTGA TTTTAATTTTAGAAA TERM 2631 1762028 - 1762067 + F 100 -12.6 -4.67038 | gap 1, opp_overlap 1762028 ATATTATAAAAGAAA TCACTAAAAATCAACTATA GAC TA-AGTTGGTTTTTAGTGA TTTTAATTTTAGAAA CLI_1663 1762252 - 1762959 + | antibiotic ABC transporter, ATP-binding protein CLI_1664 1762962 - 1763693 + | antibiotic ABC transporter, permease protein CLI_1665 1763864 - 1764439 + | antibiotic ABC transporter, permease protein CLI_1666 1764556 - 1765215 + | putative antibiotic transporter response regulator CLI_1667 1765206 - 1766585 + | putative antibiotic transporter sensor protein TERM 2632 1766700 - 1766653 - f 100 -19 -5.00846 | opp_overlap 1766657 1766667, overlap 1766657 TAAATATTATAAAAA TAAATCACTAAAAATTAATCAG ATTT CTGATTAATTTTTAGTGATTTT AATTGGGAAAATAAT TERM 2633 1766696 - 1766657 - f 100 -19.8 -4.98911 | opp_overlap 1766657 1766667, overlap 1766653 TATTATAAAAATAAA TCACTAAAAATTAATCAG ATTT CTGATTAATTTTTAGTGA TTTTAATTGGGAAAA TERM 2634 1766657 - 1766696 + F 100 -19.8 -4.4078 | opp_overlap 1766657 1766653, overlap 1766667 TATTATAAAAATAAA TCACTAAAAATTAATCAG ATTT CTGATTAATTTTTAGTGA TTTTAATTGGGAAAA TERM 2635 1766667 - 1766686 + F 86 -8 -4.86773 | opp_overlap 1766657 1766653, overlap 1766657 ATAAATCACTAAAAA TTAATCAG ATTT CTGATTAA TTTTTAGTGATTTTA TERM 2636 1766905 - 1766892 - f 81 -5.3 -5.30448 | opp_overlap 1766892 AAACAAATAGAAAAA TGCAT AATT ATGCA TCTGTATACAATTAG arcA-2 1767149 - 1768375 + | arginine deiminase TERM 2637 1768381 - 1768434 + F 100 -12.4 -4.72986 | gap 1, opp_overlap 1768381 1768412 TTTAAGATAACCCAA TTATTTAGAT-ATGTTAACATAATT TATAT AATTATGTTAACATAATCTATATAA TTTTTCATGAAAATC TERM 2638 1768434 - 1768381 - f 93 -12.4 -3.29147 | gap 1, opp_overlap 1768381, overlap 1768412 TTTAAGATAACCCAA TTATTTAGAT-ATGTTAACATAATT TATAT AATTATGTTAACATAATCTATATAA TTTTTCATGAAAATC TERM 2639 1769707 - 1769725 + G 72 -9 -2.99471 | opp_overlap 1769719 TAGCAATCTTAGCTT CCATATAT ACA ATATATGG TATATATGCAGGTGG arcD 1768500 - 1769918 + | arginine/ornithine antiporter TERM 2640 1770139 - 1770103 - f 72 -6 -4.55004 | opp_overlap 1770111, overlap 1770111 AAGAGAAAATATAAA TAATAAAAGGATAGCC TTAGT GGTTATCCTTTTTCTA CATATACATTATGTA TERM 2641 1770111 - 1770131 + F 86 -7.6 -4.89852 | opp_overlap 1770103 1770111 ATATAAATAATAAAA GGATAGCC TTAGT GGTTATCC TTTTTCTACATATAC TERM 2642 1770131 - 1770111 - f 75 -5.4 -5.06472 | opp_overlap 1770111, overlap 1770103 ATATAAATAATAAAA GGATAGCC TTAGT GGTTATCC TTTTTCTACATATAC CLI_1672 1771194 - 1771790 + | hypothetical protein CLI_1673 1772158 - 1772718 + | HD domain-containing protein CLI_1674 1772758 - 1772907 + | hypothetical protein TERM 2643 1773218 - 1773183 - T 100 -15 -3.4678 | opp_overlap 1773167 1773184, overlap 1773184 ATTTTTATATTAGAA TGGACAGCTTAATATA AAAA TATATTAAGCTGTCCT ATATTAAATAAAATT TERM 2644 1773184 - 1773217 + T 100 -18.5 -3.10522 | opp_overlap 1773183 1773184, overlap 1773167 TTTTTATATTAGAAT GGACAGCTTAATATA AAAA TATATTAAGCTGTCC TATATTAAATAAAAT TERM 2645 1773217 - 1773184 - T 100 -18.5 -2.67747 | opp_overlap 1773167 1773184, overlap 1773183 TTTTTATATTAGAAT GGACAGCTTAATATA AAAA TATATTAAGCTGTCC TATATTAAATAAAAT CLI_1675 1773570 - 1773232 - | hypothetical protein CLI_1676 1773837 - 1777130 + | SNF2 family helicase CLI_1677 1777320 - 1778141 + | RelA/SpoT domain-containing protein TERM 2646 1778417 - 1778395 - f 72 -5 -5.06735 | GAGAAATTACAAAAA TTTTTAATTG CGT CAATTAAGAA CTACTAAAGTGTATT CLI_1678 1778564 - 1779019 + | hypothetical protein CLI_1679 1779266 - 1780255 + | AraC family transcriptional regulator TERM 2647 1780275 - 1780299 + F 100 -5.8 -6.17033 | opp_overlap 1780275 1780267 AATAAACTATAAAAA TGTTCCAAAG TGATT TTTTGGAGCA TTTTTTATTTTTTTT TERM 2648 1780609 - 1780630 + G 71 -3.1 -5.18726 | AACTGTAGGTATTAT TATAATCTT AAGG ATGATTATA TTTTTATTGTCAGGG TERM 2649 1780844 - 1780860 + G 81 -8.1 -4.09627 | GCAGCTATTGTAACT CCTATAA TAA TTATAGG TTATCTTTTATATTT TERM 2650 1781629 - 1781641 + G 72 -6.3 -4.33258 | opp_overlap 1781624 AATGGAAGAGCTTAT GGATA AGG TATCC TTTGTATTTCAAGAT CLI_1680 1780403 - 1782157 + | ABC transporter ATP-binding/permease protein CLI_1681 1782159 - 1783883 + | ABC transporter ATP-binding/permease protein TERM 2651 1783922 - 1783953 + F 93 -7.5 -5.2166 | opp_overlap 1783922, overlap 1783927 AAACAAGGAGAAGAA TAAAAGGATAGTC TTAACT GGCTATTCTTTTA TTTTTTAAATTATTA TERM 2652 1784037 - 1784011 - f 72 -4.7 -4.98468 | ATAATAAAAAAATAA TTATATAAATT TTAGT AATTCATATAA TCGTCAGTAGCTTAA TERM 2653 1784845 - 1784828 - g 77 -5.6 -4.98522 | AAGGTCATACAAAAA TAGCTC TAATAG GAGCTA AAAAGGAGCTAAATG TERM 2654 1785020 - 1785003 - g 71 -5.5 -4.3902 | ATTAGAAAAAGTAAA GCCAACA GCAG TGGTGGC AATGGATGACTTGTT CLI_1682 1784275 - 1785276 + | LacI family transcription regulator TERM 2655 1785510 - 1785477 - f 100 -11.5 -3.89235 | opp_overlap 1785477 1785476 1785475 1785479 ATCAAATAAAATTAA TATTATTTAATAAAT AAAA ATTTATTAAATAATA GATTTTATAAGAATT TERM 2656 1785477 - 1785510 + F 85 -11.5 -2.5369 | opp_overlap 1785477, overlap 1785476 1785475 1785479 ATCAAATAAAATTAA TATTATTTAATAAAT AAAA ATTTATTAAATAATA GATTTTATAAGAATT TERM 2657 1785479 - 1785508 + F 76 -9.7 -2.80077 | opp_overlap 1785477, overlap 1785477 1785476 1785475 CAAATAAAATTAATA TTATTTAATAAAT AAAA ATTTATTAAATAA TAGATTTTATAAGAA TERM 2658 1786460 - 1786450 - g 76 -5.4 -5.093 | TGTAAAATAACAAAA GCAA AGC TTGC AGGAAAAGCAGGGGT CLI_1683 1785571 - 1786518 + | putative glucokinase TERM 2659 1786639 - 1786604 - f 82 -9.2 -3.4082 | opp_overlap 1786599 1786610, overlap 1786597 1786596 1786610 GAAATAAGTTTAGAA CTATAAGTATTAGTTC TAAA GGACTAGTACTTATAG TAGAATTAATTATAG CLI_1684 1786766 - 1788430 + | glycosy hydrolase family protein CLI_1685 1788472 - 1790130 + | PTS system, glucose/glucoside family, IIBC component CLI_1686 1790134 - 1790925 + | endonuclease/exonuclease/phosphatase family protein TERM 2660 1790933 - 1790989 + F 95 -12.6 -3.71792 | opp_overlap 1790934 1790936, overlap 1790935 1790936 AAATTTAAAAAAGTA AGAGGACAGTTCACAAATTTTAAGTT ATTTG AACTTAAAGTATGTGAACTGTCCATA TTAATTTTCAGTTAG TERM 2661 1790988 - 1790934 - f 100 -11.7 -3.95677 | opp_overlap 1790933 1790935 1790936, overlap 1790936 AATTTAAAAAAGTAA GAGGACAGTTCACAAATTTTAAGTT ATTTG AACTTAAAGTATGTGAACTGTCCAT ATTAATTTTCAGTTA TERM 2662 1790935 - 1790987 + F 100 -17.4 -3.43033 | opp_overlap 1790934 1790936, overlap 1790933 1790936 ATTTAAAAAAGTAAG AGGACAGTTCACAAATTTTAAGTT ATTTG AACTTAAAGTATGTGAACTGTCCA TATTAATTTTCAGTT TERM 2663 1790986 - 1790936 - f 100 -18.7 -3.54575 | opp_overlap 1790935 1790933 1790936, overlap 1790934 TTTAAAAAAGTAAGA GGACAGTTCACAAATTTTAAGTT ATTTG AACTTAAAGTATGTGAACTGTCC ATATTAATTTTCAGT TERM 2664 1790936 - 1790986 + F 100 -20.9 -2.64735 | opp_overlap 1790936 1790934, overlap 1790935 1790933 TTTAAAAAAGTAAGA GGACAGTTCACAAATTTTAAGTT ATTTG AACTTAAAGTATGTGAACTGTCC ATATTAATTTTCAGT TERM 2665 1791462 - 1791444 - g 74 -3.2 -5.46657 | opp_overlap 1791444, overlap 1791445 GATTCTAATAAAAAA TTGAAAAT AAA ATTTTCAG ATTTAAGTTTTATAA CLI_1687 1791150 - 1791773 + | hypothetical protein TERM 2666 1791885 - 1791930 + T 93 -10.1 -3.84825 | gap 1, opp_overlap 1791879 1791887, overlap 1791886 1791889 CAAACATAAGGCAAT AACACTTTAAATCTTCTTATCT TAA AG-TAAGAAGATTTAAAGTGAG TTTGATATAGATAAA TERM 2667 1791886 - 1791929 + T 93 -13.6 -2.90573 | gap 1, opp_overlap 1791879 1791887, overlap 1791885 1791889 AAACATAAGGCAATA ACACTTTAAATCTTCTTATCT TAA AG-TAAGAAGATTTAAAGTGA GTTTGATATAGATAA TERM 2668 1791928 - 1791887 - T 100 -17.1 -3.7744 | gap 1, opp_overlap 1791886 1791885 1791889, overlap 1791879 AACATAAGGCAATAA CACTTTAAATCTTCTTATCT TAA AG-TAAGAAGATTTAAAGTG AGTTTGATATAGATA TERM 2669 1791889 - 1791926 + T 100 -13.9 -2.69601 | gap 1, opp_overlap 1791887 1791879, overlap 1791886 1791885 CATAAGGCAATAACA CTTTAAATCTTCTTATCT TAA AG-TAAGAAGATTTAAAG TGAGTTTGATATAGA CLI_1688 1792397 - 1792062 - | hypothetical protein TERM 2670 1792691 - 1792678 - H 86 -3.9 -6.02919 | TTATAAATAAAAAAA CATAA ACTA TTATG AAGGGATAAATTATA TERM 2671 1792956 - 1792933 - g 81 -8.4 -4.32482 | AGGGAGAATTTAAAA TTTTTATAGA AGGC TCTATAAAAA TAAGAATATTATTTT CLI_1689 1792725 - 1794512 + | hypothetical protein CLI_1690 1794671 - 1795126 + | hypothetical protein TERM 2672 1795209 - 1795167 - T 100 -17.6 -4.15998 | opp_overlap 1795170 1795175, overlap 1795170 ATTTAAAGTAAATAA TAACTAAATACATAATAATA TAC CATTATTATGTATTTAGTTA TAAAAAAGCATATCT TERM 2673 1795170 - 1795206 + T 100 -14.2 -3.28924 | opp_overlap 1795167 1795170, overlap 1795175 TAAAGTAAATAATAA CTAAATACATAATAAT ATACC ATTATTATGTATTTAG TTATAAAAAAGCATA TERM 2674 1795206 - 1795170 - T 100 -14.9 -4.18294 | opp_overlap 1795170 1795175, overlap 1795167 TAAAGTAAATAATAA CTAAATACATAATAATA TAC CATTATTATGTATTTAG TTATAAAAAAGCATA TERM 2675 1795175 - 1795201 + T 78 -8.3 -3.9941 | opp_overlap 1795170 1795167, overlap 1795170 TAAATAATAACTAAA TACATAATAAT ATACC ATTATTATGTA TTTAGTTATAAAAAA TERM 2676 1795256 - 1795234 - T 100 -12.2 -4.57837 | opp_overlap 1795234 ATATCTTTTCAAAAA CATACCTATT TTC AATAGGTATG TTTTTATTTCGGAGT TERM 2677 1795234 - 1795256 + T 100 -12.2 -5.27938 | opp_overlap 1795234 ATATCTTTTCAAAAA CATACCTATT TTC AATAGGTATG TTTTTATTTCGGAGT CLI_1691 1797527 - 1795422 - | sensor histidine kinase CLI_1692 1798257 - 1797565 - | DNA-binding response regulator TERM 2678 1798089 - 1798123 + g 72 -8.1 -3.21772 | overlap 1798087 1798090 CATCCATTTTAGGCA TCATGATATCCAT AATAATAAG ATGGATATCATGG TCTTCTAAAAGCATT TERM 2679 1798090 - 1798122 + g 73 -9.4 -2.52742 | overlap 1798089 1798087 ATCCATTTTAGGCAT CATGATATCCAT AATAATAAG ATGGATATCATG GTCTTCTAAAAGCAT TERM 2680 1798413 - 1798399 - H 73 -7.2 -4.08578 | opp_overlap 1798399 AAAGTTAAGTATAAA GAAATG ATC CATTTC TTATTATAAAAAAGT TERM 2681 1798399 - 1798413 + H 70 -7.2 -3.79113 | opp_overlap 1798399 AAAGTTAAGTATAAA GAAATG ATC CATTTC TTATTATAAAAAAGT TERM 2682 1798460 - 1798474 + H 89 -4.4 -6.04324 | opp_overlap 1798460 TATCTTTTGTATAGA TTTTAT TTA ATAAAA TTTTTTCTTTTTTAG CLI_1693 1798838 - 1800064 + | major facilitator family transporter TERM 2683 1800081 - 1800058 - T 81 -7 -4.87626 | opp_overlap 1800058 1800061 TTTTAATAGTAAAAA TAATTAAATA AATT TATTTAATTA TTTCTGTAAACGTTA TERM 2684 1800058 - 1800081 + T 73 -7 -4.0492 | opp_overlap 1800058, overlap 1800061 TTTTAATAGTAAAAA TAATTAAATA AATT TATTTAATTA TTTCTGTAAACGTTA TERM 2685 1800534 - 1800511 - T 89 -9 -4.55544 | gap 1, opp_overlap 1800510 1800508 1800511 AATATATAATGAAAA GGACAGGA-TA TAA TATTCCTGTCC CTATTAATAACTTGT TERM 2686 1800511 - 1800534 + T 72 -9 -2.50338 | gap 1, opp_overlap 1800511, overlap 1800510 1800508 AATATATAATGAAAA GGACAGGATAT AAT AT-TCCTGTCC CTATTAATAACTTGT CLI_1694 1801476 - 1800619 - | HAD family hydrolase CLI_1695 1802255 - 1801488 - | DeoR family transcriptional regulator TERM 2687 1801702 - 1801688 - G 74 -8.6 -3.29144 | TCATTTTTTTCATAA CAGAAG CAT CTTCTG CATGTGCCACAGTTA TERM 2688 1802105 - 1802120 + g 83 -7.6 -4.64657 | overlap 1802119 CACCACCATGAGTTC GAAGGA TTGC TCCTTC TTTTTCAAGATTTAC TERM 2689 1802432 - 1802442 + H 71 -5.4 -4.60889 | opp_overlap 1802415, overlap 1802425 TGTAAAAAGATTTTT CAGA AGA TCTG TTTTTAGAAGTGGTT TERM 2690 1803154 - 1803138 - g 74 -6.7 -4.28018 | overlap 1803147 AATAGCCTATGAAAA TATAAAG GAG CTTTATA AAGCATTAGACAATC CLI_1696 1802788 - 1803318 + | putative RNA polymerase sigma factor CLI_1697 1803508 - 1803687 + | hypothetical protein TERM 2691 1803775 - 1803729 - T 79 -8.2 -4.12899 | opp_overlap 1803730 1803733 1803755, overlap 1803730 1803733 ATTAGAAGTAAATAA GTGAGGGGATATTTCAAGATTA AAT TTATTTTGAAATATCCCCTTAT TTTAAAATATTATTA TERM 2692 1803774 - 1803730 - T 90 -11.7 -3.06655 | opp_overlap 1803730 1803733 1803755, overlap 1803729 1803733 TTAGAAGTAAATAAG TGAGGGGATATTTCAAGATTA AAT TTATTTTGAAATATCCCCTTA TTTTAAAATATTATT TERM 2693 1803730 - 1803774 + T 100 -16.1 -4.21314 | opp_overlap 1803729 1803730 1803733, overlap 1803733 1803755 TTAGAAGTAAATAAG TGAGGGGATATTTCAAGATTA AAT TTATTTTGAAATATCCCCTTA TTTTAAAATATTATT TERM 2694 1803771 - 1803733 - T 91 -13.4 -2.7363 | opp_overlap 1803730 1803733 1803755, overlap 1803730 1803729 GAAGTAAATAAGTGA GGGGATATTTCAAGATTA AAT TTATTTTGAAATATCCCC TTATTTTAAAATATT TERM 2695 1803733 - 1803771 + T 100 -15.6 -4.2142 | opp_overlap 1803733 1803730 1803729, overlap 1803730 1803755 GAAGTAAATAAGTGA GGGGATATTTCAAGATTA AAT TTATTTTGAAATATCCCC TTATTTTAAAATATT CLI_1698 1807612 - 1803983 - | collagenase TERM 2696 1806913 - 1806925 + g 74 -6.3 -4.4388 | CATCCGCTTTTAATT TATCC TTT GGATA TTTGTTCATTTCTCT TERM 2697 1807980 - 1808001 + H 100 -9.5 -6.04324 | opp_overlap 1807980 TCTAGGAATTTTAAA CCTAAGGGA AATA TCCTTTAGG TTTTTTATTTTTTAA TERM 2698 1808001 - 1807980 - H 70 -7.3 -3.67976 | opp_overlap 1807980 TCTAGGAATTTTAAA CCTAAGGGA AATA TCCTTTAGG TTTTTTATTTTTTAA metF 1808082 - 1808969 + | 5,10-methylenetetrahydrofolate reductase CLI_1700 1809145 - 1809825 + | hypothetical protein TERM 2699 1811996 - 1811984 - g 72 -4.9 -4.90321 | AAAAACAATATAAAA TTAGT AGG ACTAA GTGCTTTGATGACTA CLI_1701 1809815 - 1812193 + | putative 5-methyltetrahydrofolate--homocysteine methyltransferase TERM 2700 1812377 - 1812354 - T 83 -6.8 -5.14985 | opp_overlap 1812349 1812354 TTAAACATATAAAAA CACTTACC TTTATACT GGTAAGTG TTTTGTAGTCTTGTA TERM 2701 1812354 - 1812377 + T 77 -6.8 -4.56629 | opp_overlap 1812354, overlap 1812349 TTAAACATATAAAAA CACTTACC TTTATACT GGTAAGTG TTTTGTAGTCTTGTA CLI_1702 1812859 - 1812440 - | hypothetical protein CLI_1703 1813369 - 1813941 + | RNA polymerase factor sigma-70 TERM 2702 1814721 - 1814711 - g 70 -4 -4.91712 | GTTAATGTAGAAAAA GTAA GTT TTAC ACCTATAAATACTAC CLI_1704 1813934 - 1815415 + | hypothetical protein TERM 2703 1815457 - 1815484 + F 100 -7.8 -5.68023 | opp_overlap 1815457 ATAAATAAGCAAAAA GAGTATTTCACT AAAA GGTGAGATGCTC TTTTTTTAATTCTAG acoR 1815765 - 1817717 + | aco operon transcriptional regulator TERM 2704 1817738 - 1817698 - f 79 -10 -2.61126 | overlap 1817697 1817726 ATAAATTAGAGGAAG TTTCAAAATGGGAAAAAT AATTA ATAATTCCCATTTTGAAA TAAGTATTTTCCCAA TERM 2705 1817803 - 1817786 - f 93 -11.3 -3.35349 | opp_overlap 1817786 AAATAATCTTTAGAA GCCTTGC AAAT GCAAGGC TTTTTCTTTTGGCAT TERM 2706 1817786 - 1817803 + F 100 -11.3 -5.46706 | opp_overlap 1817786 AAATAATCTTTAGAA GCCTTGC AAAT GCAAGGC TTTTTCTTTTGGCAT CLI_1706 1817886 - 1818257 + | hypothetical protein acoA 1818278 - 1819261 + | TPP-dependent acetoin dehydrogenase complex, E1 component, alpha subunit acoB 1819264 - 1820235 + | TPP-dependent acetoin dehydrogenase complex, E1 component, beta subunit TERM 2707 1821184 - 1821170 - g 71 -7.2 -3.79866 | overlap 1821168 GGAGAAAGAGAAATA TCCTTT AAA AAAGGA GAAACTTTTATTTTT acoX 1820288 - 1821283 + | acetoin catabolism protein X acoC 1821319 - 1822629 + | TPP-dependent acetoin dehydrogenase complex, E2 component, dihydrolipoamide acetyltransferase acoL 1822642 - 1824033 + | TPP-dependent acetoin dehydrogenase complex, E3 component, dihydrolipoamide dehydrogenase CLI_1712 1824058 - 1825053 + | putative lipoate-protein ligase A TERM 2708 1825193 - 1825219 + F 100 -8.8 -5.20331 | opp_overlap 1825193 AAAGTAAATAAGAAA GAGTATTTCGCT AAA AGTGAGATGCTC TTTTCTTTGTTATTT CLI_1713 1825441 - 1826586 + | glycine betaine/L-proline ABC transporter, ATP-binding protein CLI_1714 1826579 - 1828162 + | glycine betaine/L-proline ABC transporter, permease/glycine betaine/L-proline-binding protein TERM 2709 1828296 - 1828260 - f 79 -9 -3.65294 | gap 1, opp_overlap 1828260, overlap 1828256 TTCTATATAAAGCAA TAGCGGTAGTTATATAT TAGG AT-TTTAACTACCGCTA TTTTTTTATAAATAA TERM 2710 1828260 - 1828296 + F 100 -9 -5.64274 | gap 1, opp_overlap 1828256 1828260 TTCTATATAAAGCAA TAGCGGTAGTTATATAT TAGG AT-TTTAACTACCGCTA TTTTTTTATAAATAA TERM 2711 1828868 - 1828836 - g 75 -4.5 -5.14965 | gap 1, opp_overlap 1828844, overlap 1828838 AGCTTCAGCAAAAAA GATTAATATAACTA AAGACA TAGTTATATTAA-C AGCTACTTCAGGAGA TERM 2712 1828867 - 1828838 - g 81 -8.2 -4.20707 | opp_overlap 1828844, overlap 1828836 CTTCAGCAAAAAAGA TTAATATAACTA AAGACA TAGTTATATTAA CAGCTACTTCAGGAG thrC 1828456 - 1829937 + | threonine synthase thrB 1829947 - 1830840 + | homoserine kinase CLI_1717 1830967 - 1832286 + | aspartate kinase TERM 2713 1833735 - 1833725 - g 72 -2.6 -5.38951 | AATCCATAGAAAAAA TAAA GAA TTTA GATGTAGTAGACAAA hom-1 1832509 - 1833786 + | homoserine dehydrogenase TERM 2714 1834496 - 1834485 - g 89 -4.4 -5.94214 | opp_overlap 1834485 1834477, overlap 1834477 AATATAATAAAAAAA TCTC ATGA GAGA TCTGTTTATTTTGGA CLI_1719 1834443 - 1836353 + | sensory box sigma-54 dependent transcriptional regulator TERM 2715 1836492 - 1836456 - f 89 -9.7 -4.24569 | opp_overlap 1836468, overlap 1836453 1836468 TAAAAATAATAAGAA CTGTATAAGAAATAAAC AGT GTTTAATTTTTATACAG TAAAAAGCAGCTTAA TERM 2716 1836533 - 1836499 - f 100 -17.5 -4.84527 | opp_overlap 1836499 TTTATACAGTAAAAA GCAGCTTAATGTATA GTTTT TATACATTAAGCTGC TTTTTATTTTTAGTG TERM 2717 1836499 - 1836533 + F 100 -18.2 -5.65496 | opp_overlap 1836499 TTTATACAGTAAAAA GCAGCTTAATGTATAG TTT TTATACATTAAGCTGC TTTTTATTTTTAGTG TERM 2718 1836595 - 1836570 - f 84 -9.3 -3.78329 | opp_overlap 1836570 1836576, overlap 1836576 CCTTATTAAGGTAAA TACAAATAAAT TTAA ATTTATTTGTA TTGTAGTAGTTATTA TERM 2719 1836570 - 1836595 + F 83 -9.3 -3.49756 | opp_overlap 1836570 1836576, overlap 1836576 CCTTATTAAGGTAAA TACAAATAAAT TTAA ATTTATTTGTA TTGTAGTAGTTATTA CLI_1720 1836863 - 1838029 + | NADH-dependent butanol dehydrogenase TERM 2720 1838075 - 1838122 + F 95 -12.4 -3.37915 | opp_overlap 1838088, overlap 1838088 CTTTATTGTATAACT TGTAACTTTAAAACTTCCTTTT TAAA AAGAGGAAGTTTTAGAATTGCA TATTACTTTATAAAA TERM 2721 1838088 - 1838109 + F 80 -8.1 -4.19953 | opp_overlap 1838088, overlap 1838075 CTTGTAACTTTAAAA CTTCCTTTT TAAA AAGAGGAAG TTTTAGAATTGCATA CLI_1721 1838358 - 1839245 + | ferredoxin--NADP(+) reductase subunit alpha TERM 2722 1840542 - 1840562 + G 70 -8.3 -3.12666 | overlap 1840540 1840539 ATGCAGGTGGAGATG CAGTAACAG GCG CTGCTACTG TAATTTTAGCTATGG TERM 2723 1840602 - 1840592 - g 72 -6.8 -4.18506 | GGAGCTGGAAAACAA GCTG CTA CAGC CATAGATGAATATTT gltA-1 1839245 - 1840627 + | putative oxidoreductase TERM 2724 1840674 - 1840633 - f 73 -7.6 -3.78394 | opp_overlap 1840643, overlap 1840643 AAGTAAATAAATCAA TTATAAAAAACTTCAACA AAATGA TGTTGAAGTTTTTTATTT TAATAATGATTTTAA TERM 2725 1840664 - 1840643 - f 90 -7.4 -5.38249 | opp_overlap 1840643, overlap 1840633 ATCAATTATAAAAAA CTTCAACA AAATGA TGTTGAAG TTTTTTATTTTAATA TERM 2726 1840643 - 1840664 + F 95 -7.4 -5.83211 | opp_overlap 1840643 1840633 ATCAATTATAAAAAA CTTCAACA AAATGA TGTTGAAG TTTTTTATTTTAATA CLI_1723 1840856 - 1842787 + | signal-transduction and transcriptional-control protein CLI_1724 1843216 - 1843917 + | pentapeptide repeat-containing protein TERM 2727 1843938 - 1843968 + F 77 -4.9 -5.43414 | gap 1, opp_overlap 1843938 AATATTTATTTAAAA TACCGTATTATTCA TAAG TGAATT-TACGGTA TTTTTTATGTCTCAT TERM 2728 1845030 - 1845020 - g 70 -4 -4.91511 | opp_overlap 1845020 ACCTCATTATAAAAA TTGT ATT ACAA ATTATAAGTTTGGTG CLI_1725 1844340 - 1845698 + | cell adhesion domain-containing protein TERM 2729 1845740 - 1845713 - f 75 -5.6 -4.946 | opp_overlap 1845713, overlap 1845700 ATTAAATATCAAAAA GCACTTAAGG AATATAAA CCTTAGGTGC TTTTTACATACTTAG TERM 2730 1845713 - 1845740 + F 83 -7.8 -4.7078 | opp_overlap 1845700 1845713 ATTAAATATCAAAAA GCACTTAAGG AATATAAA CCTTAGGTGC TTTTTACATACTTAG CLI_1726 1845792 - 1846010 + | hypothetical protein CLI_1727 1846190 - 1846411 + | putative lipoprotein TERM 2731 1846466 - 1846507 + F 86 -8.9 -4.39889 | opp_overlap 1846469 1846470, overlap 1846468 1846470 TAATCTTATATTAAC TAAGGGCCACCTATAAA TAATTAAT TTTATAGGTGGCCTGTG TTTTAATCTAATTAT TERM 2732 1846468 - 1846505 + F 84 -9.3 -3.7948 | opp_overlap 1846469 1846470, overlap 1846466 1846470 ATCTTATATTAACTA AGGGCCACCTATAAA TAATTAAT TTTATAGGTGGCCTG TGTTTTAATCTAATT TERM 2733 1846504 - 1846469 - f 90 -10.6 -3.43071 | opp_overlap 1846468 1846466 1846470, overlap 1846470 TCTTATATTAACTAA GGGCCACCTATAAA TAATTAAT TTTATAGGTGGCCT GTGTTTTAATCTAAT TERM 2734 1846470 - 1846503 + F 100 -14.1 -3.46858 | opp_overlap 1846469 1846470, overlap 1846468 1846466 CTTATATTAACTAAG GGCCACCTATAAA TAATTAAT TTTATAGGTGGCC TGTGTTTTAATCTAA TERM 2735 1846503 - 1846470 - f 100 -14.1 -2.65521 | opp_overlap 1846470 1846468 1846466, overlap 1846469 CTTATATTAACTAAG GGCCACCTATAAA TAATTAAT TTTATAGGTGGCC TGTGTTTTAATCTAA CLI_1728 1846767 - 1846928 + | hypothetical protein CLI_1729 1847000 - 1847149 + | hypothetical protein CLI_1730 1847212 - 1847679 + | putative peptidoglycan-binding protein TERM 2736 1847710 - 1847660 - f 74 -8.6 -3.36175 | opp_overlap 1847670, overlap 1847670 1847699 AAGCTTTATTTAGAA TAGACAAAAAGGTGGTCTAA TGATTTATTTT TTAGACCACCTTTTTGTAAA AAAGCACCTTTAGAT TERM 2737 1847700 - 1847670 - f 87 -7 -5.12474 | opp_overlap 1847670, overlap 1847660 1847699 TAGAATAGACAAAAA GGTGGTCTAA TGATTTATTTT TTAGACCACC TTTTTGTAAAAAAGC TERM 2738 1847670 - 1847700 + F 93 -9.1 -4.82901 | opp_overlap 1847660 1847670 1847699 TAGAATAGACAAAAA GGTGGTCTAATGA TTTAT TTTTTAGACCACC TTTTTGTAAAAAAGC TERM 2739 1848325 - 1848351 + F 86 -8 -4.88288 | AGATATTGAGTTTTA GAGGTACTCCCA TTA TAGAAGTACCTC TTTTGTATTATTTTA CLI_1731 1848504 - 1848731 + | hypothetical protein TERM 2740 1848805 - 1848830 + F 74 -4.8 -5.24003 | gap 1, opp_overlap 1848805 TTATTTAAACAAAAA TAGGCAGC-CT AATTA AGTGTTGCCTA TTTTTAATTTTTATT TERM 2741 1848815 - 1848805 - f 81 -5.4 -5.30616 | opp_overlap 1848805 TTATTTAAACAAAAA TAGG CAG CCTA ATTAAGTGTTGCCTA TERM 2742 1848934 - 1848954 + F 100 -8.3 -5.38951 | opp_overlap 1848914 1848934 TTGCTTAAGCAAAAA GAACCCC AATGAAA GGGGTTC TTTTTTATATGGATT TERM 2743 1848954 - 1848934 - f 88 -8.3 -4.8622 | opp_overlap 1848934, overlap 1848914 TTGCTTAAGCAAAAA GAACCCC AATGAAA GGGGTTC TTTTTTATATGGATT CLI_1732 1849472 - 1850104 + | hypothetical protein CLI_1733 1850137 - 1850691 + | hypothetical protein alr-1 1851142 - 1852311 + | alanine racemase TERM 2744 1852343 - 1852327 - f 75 -3.8 -5.56263 | AGGATAAAATAAAAA TTTAGA AGATG TCTAAA AATAAAATATACTTA TERM 2745 1852634 - 1852611 - f 82 -9.8 -3.0218 | opp_overlap 1852607 1852606, overlap 1852599 ATATATTTATACATA TTACCTTTTT ATAT AAAAAGGTAA AAGGCTTAATTAAAA CLI_1735 1852737 - 1854209 + | methyl-accepting chemotaxis protein TERM 2746 1855275 - 1855255 - g 77 -7.6 -4.0942 | TAGCTACTATAGAAA CTGCAGCT GGGAT AACTGCAG GAGGAAAAACTGGAT CLI_1736 1854297 - 1855637 + | xanthine/uracil permease family protein TERM 2747 1855673 - 1855708 + F 71 -5.6 -4.72729 | opp_overlap 1855669 1855673, overlap 1855669 AAAATAAATAATAAA CCCTGTTTAATTAT TGAGAAAT ATAACTAAGCAGGG TTTTAATTTTGCTTC TERM 2748 1855708 - 1855673 - f 73 -5.6 -4.73617 | opp_overlap 1855669 1855673, overlap 1855669 AAAATAAATAATAAA CCCTGTTTAATTAT TGAGAAAT ATAACTAAGCAGGG TTTTAATTTTGCTTC CLI_1737 1855875 - 1856708 + | hypothetical protein TERM 2749 1856782 - 1856817 + T 100 -7.7 -5.56264 | opp_overlap 1856780 1856782 1856791 TTTAAAAGATGAAGA CCTATGAAATCCTTA TAATTT TAAGGAAATCATAGG TTTTTTATATTTAAA TERM 2750 1856817 - 1856782 - T 70 -7.7 -3.33884 | opp_overlap 1856782, overlap 1856780 1856791 TTTAAAAGATGAAGA CCTATGAAATCCTTA TAATTT TAAGGAAATCATAGG TTTTTTATATTTAAA CLI_1738 1857809 - 1856925 - | short chain dehydrogenase/reductase family oxidoreductase TERM 2751 1858051 - 1858007 - H 72 -5.2 -5.00884 | opp_overlap 1858007 ATTTGGTTTAAAAAA TCCTAGTCTGTTTTAAAAAT AACTG ATTTATAAATCGGACTAAGA GTTTAAATGTTAAAA TERM 2752 1859924 - 1859898 - g 71 -6.7 -3.87318 | opp_overlap 1859888, overlap 1859888 1859899 AACTAGCAGAGCAAA CCTCTACTTCT ACTAA AGAAATAGAGA ATATAGTGGAAGAAA CLI_1739 1858301 - 1860307 + | methyl-accepting chemotaxis protein TERM 2753 1860323 - 1860342 + F 100 -10 -4.69664 | opp_overlap 1860322 1860323 ATAGCTGTTATAAAG CCTCATGG TAAT CCATGGGG TTTTTCAATAATATG TERM 2754 1860498 - 1860445 - f 100 -10.1 -4.4572 | gap 1, opp_overlap 1860445 1860444 1860448, overlap 1860448 1860450 AATATTTTAAAGAAA TAACAG-TAGCTAGTTTATATATG TACTTAT CATATATAAACTAGCTACCTAGTA AGTTCTAATTTAATA TERM 2755 1860494 - 1860448 - f 100 -13.4 -4.33281 | opp_overlap 1860448 1860445 1860444, overlap 1860445 1860450 ATTTTAAAGAAATAA CAGTAGCTAGTTTATATATG TACTTAT CATATATAAACTAGCTACCT AGTAAGTTCTAATTT TERM 2756 1860448 - 1860496 + F 75 -9.4 -2.64805 | gap 2, opp_overlap 1860445 1860448 1860450, overlap 1860445 1860444 ATTTTAAAGAAATAA C-AG-TAGCTAGTTTATATATG TACTTAT CATATATAAACTAGCTACCTAG TAAGTTCTAATTTAA TERM 2757 1860492 - 1860450 - f 100 -18.2 -3.75911 | opp_overlap 1860448 1860445 1860444, overlap 1860448 1860445 TTTAAAGAAATAACA GTAGCTAGTTTATATATG TACTTAT CATATATAAACTAGCTAC CTAGTAAGTTCTAAT CLI_1740 1861216 - 1862229 + | hypothetical protein TERM 2758 1862255 - 1862293 + T 100 -11.9 -5.50723 | overlap 1862292 TTTTATGTTCATCCA TCCCTATTTAGTTAGGC GAGAA GCATGGCTAAATAGGGA TTTTTATTTTAATAA CLI_1741 1862933 - 1862382 - | hypothetical protein TERM 2759 1864170 - 1864189 + G 80 -2.2 -5.75945 | GGGGATGTTTACCTC GTATTATT TCCA AAGAATAC TTTTTTTTAAGCGAT TERM 2760 1864646 - 1864628 - g 71 -3.2 -5.19251 | GAAGATGAAGAAAAA CTTTTAAA TTT TTTAATAG AAGGTATAGAAATGC TERM 2761 1865650 - 1865668 + G 74 -6.1 -4.48072 | TATAATGCCAGGCTA TCTTCTA AACTA TAGAAGA TTTTATGCTAAATAT CLI_1742 1863293 - 1866526 + | Snf2/Rad54 family helicase TERM 2762 1866576 - 1866528 - T 100 -17.2 -3.71649 | opp_overlap 1866530 1866533, overlap 1866530 1866533 TTTTTAAATTTTAAA TATAAGATGGTATCTCAAAATA TATTT TATTTTGAGACACCATCTTATG TGTAATTAAGGGTTT TERM 2763 1866574 - 1866530 - T 100 -19.8 -3.43919 | opp_overlap 1866530 1866533, overlap 1866528 1866533 TTTAAATTTTAAATA TAAGATGGTATCTCAAAATA TATTT TATTTTGAGACACCATCTTA TGTGTAATTAAGGGT TERM 2764 1866530 - 1866574 + T 100 -17.6 -3.00476 | opp_overlap 1866528 1866530 1866533, overlap 1866533 TTTAAATTTTAAATA TAAGATGGTATCTCAAAATA TATTT TATTTTGAGACACCATCTTA TGTGTAATTAAGGGT TERM 2765 1866571 - 1866533 - T 100 -17.1 -3.84619 | opp_overlap 1866533 1866530, overlap 1866530 1866528 AAATTTTAAATATAA GATGGTATCTCAAAATA TATTT TATTTTGAGACACCATC TTATGTGTAATTAAG TERM 2766 1866533 - 1866571 + T 100 -14.9 -3.646 | opp_overlap 1866530 1866528 1866533, overlap 1866530 AAATTTTAAATATAA GATGGTATCTCAAAATA TATTT TATTTTGAGACACCATC TTATGTGTAATTAAG CLI_1743 1866704 - 1866582 - | hypothetical protein CLI_1744 1868219 - 1866741 - | drug resistance MFS transporter TERM 2767 1866849 - 1866825 - G 72 -6.5 -4.25052 | overlap 1866822 AGATGAAAATAATAA TGCTACTACAG CTA CTGCAATAACA TATATAAACGTAGTA TERM 2768 1867143 - 1867133 - G 72 -5.4 -4.79373 | TAATAGAATAGAAAA TAGC TAT GCTA GTTGCAGTCATCCCA TERM 2769 1867217 - 1867201 - G 81 -8.1 -4.29227 | opp_overlap 1867201 1867199 GCAATGATTAATAAA GTAATAC CTG GTATTAC TAATTTTTTAGCTCC TERM 2770 1867201 - 1867217 + g 73 -8.1 -3.39842 | opp_overlap 1867201, overlap 1867199 GCAATGATTAATAAA GTAATAC CTG GTATTAC TAATTTTTTAGCTCC TERM 2771 1868309 - 1868322 + H 76 -2.5 -5.8187 | GCTTCGAACCTTAAG TTATT TATG AATAA TTTTTTTCTTAAATC CLI_1745 1868473 - 1869135 + | TetR family transcriptional regulator CLI_1746 1869173 - 1869709 + | hypothetical protein CLI_1747 1869737 - 1870120 + | hypothetical protein CLI_1748 1870156 - 1870302 + | hypothetical protein CLI_1749 1870354 - 1870497 + | hypothetical protein TERM 2772 1870595 - 1870619 + F 84 -5.1 -5.7827 | opp_overlap 1870595 TATAAAAAATAAAAA CTCTAGAGA GAATTAA TCTTTAGAG TTTTTTATTTATGTT TERM 2773 1870619 - 1870595 - f 73 -2.9 -5.8096 | opp_overlap 1870595 TATAAAAAATAAAAA CTCTAGAGA GAATTAA TCTTTAGAG TTTTTTATTTATGTT TERM 2774 1870685 - 1870655 - f 76 -9.2 -2.89921 | opp_overlap 1870655 1870661, overlap 1870645 1870661 ACTAATTTTGATATA CAAAAACCGTAC TAAAAAC GTACGGTTTTTA TTCGATTTCATGAAA TERM 2775 1870661 - 1870679 + F 80 -6 -5.16151 | opp_overlap 1870655 1870661, overlap 1870655 TTTGATATACAAAAA CCGTAC TAAAAAC GTACGG TTTTTATTCGATTTC TERM 2776 1870679 - 1870661 - f 78 -6 -5.03994 | opp_overlap 1870661 1870655, overlap 1870655 TTTGATATACAAAAA CCGTAC TAAAAAC GTACGG TTTTTATTCGATTTC TERM 2777 1870832 - 1870813 - f 73 -7.2 -4.03413 | opp_overlap 1870816 1870817, overlap 1870817 ATTCTTCTATAGAAA TAAATCCC TTTG GGGACTTA TGGGGAATACCTAAT TERM 2778 1870828 - 1870817 - f 71 -5.8 -4.62441 | opp_overlap 1870817 1870816, overlap 1870813 TTCTATAGAAATAAA TCCC TTTG GGGA CTTATGGGGAATACC CLI_1750 1870908 - 1871216 + | hypothetical protein TERM 2779 1871484 - 1871453 - T 95 -8.2 -5.18866 | gap 1, opp_overlap 1871452 1871453 1871457 GTTAAATAAAGAAAA TAAAGGCGTACCATA GAT TA-GGTATGCCTTTA ATTATAGCAAATATC TERM 2780 1871453 - 1871484 + T 81 -10.4 -2.58249 | gap 1, opp_overlap 1871453, overlap 1871452 1871457 GTTAAATAAAGAAAA TAAAGGCGTACCATA GAT TA-GGTATGCCTTTA ATTATAGCAAATATC CLI_1751 1872165 - 1871578 - | putative DNA polymerase III, epsilon subunit TERM 2781 1872120 - 1872134 + g 73 -8.6 -3.10187 | overlap 1872117 GTTGTATAATTTCAC CAGGTT CTA AACCTG TAGTTTCTGTATCTA TERM 2782 1872740 - 1872713 - g 70 -4.2 -4.92812 | CTACAAGAAAACAAA TAGGAACAAAAT CTAT ATCCTGTGCCTA TGTAGAACCTACAGA CLI_1752 1872460 - 1873410 + | hypothetical protein TERM 2783 1873516 - 1873489 - f 95 -9.9 -4.208 | opp_overlap 1873483 1873489 TTGCAAAATTATAAA GCAGCCTCTAT GAGTGA ATAGGGGCTGC TAATATTTAAAGTGA TERM 2784 1873489 - 1873516 + F 89 -12.1 -2.85297 | opp_overlap 1873489, overlap 1873483 TTGCAAAATTATAAA GCAGCCTCTAT GAGTGA ATAGGGGCTGC TAATATTTAAAGTGA CLI_1753 1873681 - 1874316 + | UbiE/COQ5 family methlytransferase TERM 2785 1874386 - 1874430 + T 100 -9 -5.08824 | gap 1, opp_overlap 1874389, overlap 1874389 AATTAGTATTATTAG AAAGATAGTGTATCAAAAATA AATC TA-TTTTGATGCACTATCTTC TTTTTTAACTCCAGG TERM 2786 1874427 - 1874389 - T 78 -8.5 -4.00038 | gap 1, opp_overlap 1874386 1874389 TAGTATTATTAGAAA GATAGTGTATCAAAAATA AATC TA-TTTTGATGCACTATC TTCTTTTTTAACTCC TERM 2787 1874389 - 1874427 + T 100 -10.7 -4.64763 | gap 1, opp_overlap 1874389, overlap 1874386 TAGTATTATTAGAAA GATAGTGTATCAAAAATA AATC TA-TTTTGATGCACTATC TTCTTTTTTAACTCC CLI_1754 1874622 - 1874410 - | heat shock protein, molecular chaperone CLI_1755 1874971 - 1876155 + | major facilitator family protein TERM 2788 1876286 - 1876262 - f 100 -11.7 -4.57353 | opp_overlap 1876266, overlap 1876266 CTTTAGTATACAAAA TAAATGGTATA TTA TATACCATTTA CATAAAGGAGAATAA TERM 2789 1876282 - 1876266 - f 88 -8.1 -4.84146 | opp_overlap 1876266, overlap 1876262 AGTATACAAAATAAA TGGTATA TTA TATACCA TTTACATAAAGGAGA TERM 2790 1876266 - 1876282 + F 75 -8.1 -3.64703 | opp_overlap 1876262 1876266 AGTATACAAAATAAA TGGTATA TTA TATACCA TTTACATAAAGGAGA CLI_1756 1876306 - 1876869 + | hypothetical protein CLI_1757 1876862 - 1877044 + | hypothetical protein fruK 1877070 - 1877975 + | fructose-1-phosphate kinase TERM 2791 1878089 - 1878058 - T 95 -11.1 -3.68738 | opp_overlap 1878058 1878063 1878064, overlap 1878064 GGTTTAATAAATTAA TAAAAATCCCACA ATAAAA TGTGGGACTTTTA TATTAATCAAATTGC TERM 2792 1878058 - 1878089 + T 75 -8.9 -3.15574 | opp_overlap 1878058 1878064, overlap 1878063 1878064 GGTTTAATAAATTAA TAAAAATCCCACA ATAAAA TGTGGGACTTTTA TATTAATCAAATTGC TERM 2793 1878083 - 1878064 - T 93 -7.9 -5.25906 | opp_overlap 1878064 1878063 1878058, overlap 1878058 ATAAATTAATAAAAA TCCCACA ATAAAA TGTGGGA CTTTTATATTAATCA TERM 2794 1878064 - 1878083 + T 70 -7.9 -3.41627 | opp_overlap 1878058 1878064, overlap 1878063 1878058 ATAAATTAATAAAAA TCCCACA ATAAAA TGTGGGA CTTTTATATTAATCA CLI_1759 1879471 - 1878092 - | amino acid/peptide transporter TERM 2795 1879559 - 1879595 + H 75 -6.9 -4.44974 | opp_overlap 1879558 1879553 1879559 AAAATATAATAAAAG CAATAAATATTAATTTA AAT TAAATAAAAATTTATTG TTTTATCCAATTTAC CLI_1760 1880048 - 1880203 + | hypothetical protein TERM 2796 1880248 - 1880268 + F 81 -5.5 -5.42259 | TTTATAAATAATAGG TATGCATTA GGG TAAAGCATA TTTTTTTGGACATCA TERM 2797 1880992 - 1880975 - g 78 -4.3 -5.43514 | overlap 1880967 AAAAGAATTAAAAAA TTTAAAT GAAA ATTTAAA GAGTTATAATACTAG CLI_1761 1880355 - 1881329 + | hypothetical protein TERM 2798 1881569 - 1881614 + T 100 -16.7 -3.41422 | opp_overlap 1881569, overlap 1881564 ATATACATGAGTTAA TTCTATATGTATTACTTCAAA ACTC TTTAAAGTAATACATATAGAA TTATAAGCTTATTTT TERM 2799 1881614 - 1881569 - T 100 -18.9 -3.12874 | opp_overlap 1881564 1881569 ATATACATGAGTTAA TTCTATATGTATTACTTCAAA ACTC TTTAAAGTAATACATATAGAA TTATAAGCTTATTTT CLI_1762 1882148 - 1881615 - | hypothetical protein CLI_1763 1882411 - 1882566 + | hypothetical protein CLI_1764 1882603 - 1883562 + | PfkB family kinase TERM 2800 1883666 - 1883694 + T 100 -9.8 -5.34309 | opp_overlap 1883666 TTTTAACAATAAAAA TCTGTGAGTAAA GTATG TTTATTCACAGA TTTTTATTTAATGCT TERM 2801 1883694 - 1883666 - T 100 -7.6 -5.29445 | opp_overlap 1883666 TTTTAACAATAAAAA TCTGTGAGTAAA GTATG TTTATTCACAGA TTTTTATTTAATGCT safA 1884344 - 1883709 - | spore coat assembly protein SafA TERM 2802 1884458 - 1884404 - R 91 -13.6 -2.69528 | opp_overlap 1884396 1884406 1884432, overlap 1884432 TTAAATTTAAATGTA TATTTATATCCTATAATAAAAA TGGAAATAAAT TTTTTATTATAGGATATAAATA TAATCATAATAAAAT TERM 2803 1884406 - 1884456 + r 88 -11.8 -2.83715 | opp_overlap 1884404 1884432, overlap 1884396 1884432 AAATTTAAATGTATA TTTATATCCTATAATAAAAA TGGAAATAAAT TTTTTATTATAGGATATAAA TATAATCATAATAAA CLI_1766 1885165 - 1884746 - | hypothetical protein TERM 2804 1885377 - 1885340 - H 83 -6.1 -5.27709 | gap 1, opp_overlap 1885364, overlap 1885325 1885364 TTATAAAAAAAGAAA TATTTTTTATAAATATAA ACA TTAT-TCTATAAAAAATA GAATTTTAAAAGTCT CLI_1767 1885512 - 1885721 + | cold shock protein TERM 2805 1885862 - 1885889 + F 70 -4.3 -4.95302 | opp_overlap 1885862 TGTAATTTATACAAA CACTAGAAA CATTTAAAAC TTTCTAGTG TTTTATTATATTTAA CLI_1768 1886090 - 1888093 + | methyl-accepting chemotaxis protein TERM 2806 1888133 - 1888169 + T 100 -9.7 -5.49234 | opp_overlap 1888133 AATTTAAAATATGAA TTGAAGAAGTATGGTGA TGT TTAGTATACTTCTTCAA TTTTTTATTAAATAT TERM 2807 1888313 - 1888285 - T 90 -7.6 -4.91852 | opp_overlap 1888285 1888283 GCTATTAAAAATAAA CACTATCAAATT TTAAT AAATTGATAGTG TCTTTGATATATTTA TERM 2808 1888285 - 1888313 + T 72 -7.6 -3.56811 | opp_overlap 1888285, overlap 1888283 GCTATTAAAAATAAA CACTATCAAATT TTAAT AAATTGATAGTG TCTTTGATATATTTA TERM 2809 1888355 - 1888369 + T 73 -2.2 -5.74086 | overlap 1888356 TAGATTTTATGATTT TTATTT TCA AAATAG TTTTTTATTTGCTTT CLI_1769 1889954 - 1888374 - | putative drug resistance ABC transporter, ATP-binding protein CLI_1770 1890243 - 1890734 + | YbaK/prolyl-tRNA synthetase domain-containing protein TERM 2810 1890933 - 1890895 - f 100 -12 -3.89524 | opp_overlap 1890897, overlap 1890897 AGTTTATTTTATAAA GATGGTGTCTCAAAAT AGATTTA ATTTTGAGACACCATT TTATTTAGTTTGTAT TERM 2811 1890897 - 1890931 + F 100 -14.6 -5.06223 | opp_overlap 1890897 1890895 TTTATTTTATAAAGA TGGTGTCTCAAAAT AGATTTA ATTTTGAGACACCA TTTTATTTAGTTTGT TERM 2812 1890931 - 1890897 - f 100 -14.6 -3.53733 | opp_overlap 1890897, overlap 1890895 TTTATTTTATAAAGA TGGTGTCTCAAAAT AGATTTA ATTTTGAGACACCA TTTTATTTAGTTTGT TERM 2813 1891600 - 1891620 + G 72 -6.9 -4.06678 | overlap 1891602 AAAGAGTGAGACCTT TAGTATCCT GTA AGGGTACTG TTTGTGTCCATGGAT CLI_1771 1891305 - 1892159 + | sulfite/nitrite reductase family protein cheV 1893253 - 1892360 - | chemotaxis protein CheV TERM 2814 1894006 - 1893991 - g 85 -4.7 -5.56372 | AAATTAAAAGAAAAA CCACA TATTAT TGTGG GATCTCCAGGAAGAA TERM 2815 1894066 - 1894049 - g 71 -4.9 -4.74858 | TAAAGAAAAAAAAGA TAACTGC CCAT ACAGTTA AAACTATAGTTATAG CLI_1773 1893622 - 1894887 + | DEAD-box ATP dependent DNA helicase TERM 2816 1894899 - 1894947 + F 100 -14.9 -4.13014 | opp_overlap 1894904, overlap 1894904 TTAATTTAATAACAT AAAAAGGAGGTGTCTTAAAATAA AAG TTATTTTGAGGCTCCTCCTTTTG TTTTGAAAATATAAA TERM 2817 1894904 - 1894942 + F 100 -14.8 -5.08255 | opp_overlap 1894904, overlap 1894899 TTAATAACATAAAAA GGAGGTGTCTTAAAATAA AAG TTATTTTGAGGCTCCTCC TTTTGTTTTGAAAAT TERM 2818 1894942 - 1894904 - f 100 -10.4 -5.2015 | opp_overlap 1894904 1894899 TTAATAACATAAAAA GGAGGTGTCTTAAAATAA AAG TTATTTTGAGGCTCCTCC TTTTGTTTTGAAAAT CLI_1774 1895210 - 1896046 + | RNA-binding protein deaD 1896225 - 1897670 + | ATP-dependent RNA helicase DeaD TERM 2819 1897873 - 1897863 - g 72 -4 -5.17353 | opp_overlap 1897863 ATATTTAGTAAAAAA TTTG TAG CAAA GCTTTTATTGTATTC CLI_1776 1897827 - 1902284 + | hypothetical protein TERM 2820 1902324 - 1902379 + F 84 -9.6 -3.78904 | opp_overlap 1902324 1902325 1902327, overlap 1902327 1902331 AGATTTAATTTAAAA TC-ACAAAGGGATTTAACATATAATT ATTAAA AATTA-GTGTTAGATCCCTTTGTAGA TTCTTAAATTTAATA TERM 2821 1902327 - 1902375 + F 86 -11.5 -2.67717 | gap 1, opp_overlap 1902327 1902325 1902324, overlap 1902324 1902331 TTTAATTTAAAATCA CAAAGGGATTTAACATATAATT ATTAAA AATTA-GTGTTAGATCCCTTTG TAGATTCTTAAATTT TERM 2822 1902331 - 1902371 + F 71 -6.5 -4.02253 | gap 1, opp_overlap 1902327 1902325 1902324, overlap 1902327 1902324 ATTTAAAATCACAAA GGGATTTAACATATAATT ATTAAA AATTA-GTGTTAGATCCC TTTGTAGATTCTTAA TERM 2823 1904837 - 1904825 - g 72 -4.1 -5.13722 | TGTATGAAAATAAAA TCTCA GAG CGAGA GGAATCCTTAAAAAA CLI_1777 1902679 - 1906758 + | leucine-rich repeat-containing protein TERM 2824 1906844 - 1906807 - f 80 -8.1 -4.31895 | gap 1, opp_overlap 1906808, overlap 1906808 ATATATAGGAATAAA GGAGAATTAACATTTTTA TAT TAAAAA-GTTAATTCTCT TTTCTATTTTTGGGT TERM 2825 1906808 - 1906843 + F 100 -11.6 -4.98672 | gap 1, opp_overlap 1906808 1906807 TATATAGGAATAAAG GAGAATTAACATTTTTA TAT TAAAAA-GTTAATTCTC TTTTCTATTTTTGGG TERM 2826 1906843 - 1906808 - f 93 -11.6 -3.18053 | gap 1, opp_overlap 1906808, overlap 1906807 TATATAGGAATAAAG GAGAATTAACATTTTTA TAT TAAAAA-GTTAATTCTC TTTTCTATTTTTGGG TERM 2827 1906954 - 1906934 - f 73 -7.1 -4.05583 | opp_overlap 1906934, overlap 1906932 TTAATATTAAAAATA TATTTATTA ACG TAATAAATA TTATGTAAATAAACT TERM 2828 1907067 - 1907098 + F 73 -5.5 -4.82667 | opp_overlap 1907073 1907077, overlap 1907069 TATTAATATTAGCTT TTTAAATAATTTT TATAAT AAAATTATTTAGA TTTTTGATATAATAA TERM 2829 1907193 - 1907205 + G 71 -4.9 -4.77719 | opp_overlap 1907193, overlap 1907188 GGTTTGATTTTAAAG CTAAT GAT ATTAG TTTTATTAGCTTTTA CLI_1778 1907163 - 1908092 + | mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase domain-containing protein TERM 2830 1908122 - 1908160 + T 81 -7.8 -4.43309 | gap 2, opp_overlap 1908122 1908115 CTATTAAATTATTAA TACTCCCTATTATCACAA CTAGA TTGTGA-A-TAGGGAGTA TTTTAATTAAAATTG TERM 2831 1908160 - 1908122 - T 74 -8.5 -3.34227 | gap 2, opp_overlap 1908122, overlap 1908115 CTATTAAATTATTAA TACTCCCTATTATCACAAC TAG ATTGTGA-A-TAGGGAGTA TTTTAATTAAAATTG CLI_1779 1908733 - 1908218 - | ferritin family protein TERM 2832 1908628 - 1908612 - G 71 -2.3 -5.44119 | overlap 1908624 TGCACTCTAAAAAAA TTAGC GAATCCA GCTAA ATCCTCTGATTCAGC CLI_1780 1908895 - 1909077 + | hypothetical protein CLI_1781 1909138 - 1909992 + | chemotaxis response regulator/CheC-like domain-containing protein cheX 1909992 - 1910453 + | chemotaxis protein CheX TERM 2833 1910538 - 1910509 - T 79 -8.1 -4.1891 | opp_overlap 1910509, overlap 1910512 CTTGTTTAATATAAA TAAGCACTTAT AACTTTGA ATAAGTGCTTA TTTTAAAATTATTCT TERM 2834 1910509 - 1910538 + T 80 -8.1 -4.24726 | opp_overlap 1910509 1910512 CTTGTTTAATATAAA TAAGCACTTAT AACTTTGA ATAAGTGCTTA TTTTAAAATTATTCT CLI_1783 1911994 - 1910636 - | hypothetical protein TERM 2835 1911137 - 1911155 + g 70 -3.9 -5.04601 | AAAAGGTGTATATCC TTCTGGA AGAGC TTCAGAA TTTTTGCTTTCTCCA TERM 2836 1912532 - 1912551 + H 100 -9.4 -6.23545 | opp_overlap 1912536 GTCTTTATTATTTAT TAAAGAGC TTAT GCTCTTTA TTTTTTTTATTTACA CLI_1784 1912733 - 1912936 + | small, acid-soluble spore protein alpha CLI_1785 1912997 - 1913197 + | small, acid-soluble spore protein beta TERM 2837 1913254 - 1913288 + T 100 -13.9 -4.42851 | opp_overlap 1913250 1913254 1913258 AAGCAATTTAATTGA GGAATCATATAAGAG TTTAT TTCTTATATGATTCC TTTTAAGTTTATTAG TERM 2838 1913288 - 1913254 - T 91 -13.2 -2.57757 | opp_overlap 1913254, overlap 1913250 1913258 AAGCAATTTAATTGA GGAATCATATAAGA GTTTATT TCTTATATGATTCC TTTTAAGTTTATTAG TERM 2839 1913309 - 1913355 + T 70 -6.3 -4.34285 | opp_overlap 1913311 1913313, overlap 1913306 1913311 AGTTTATTAGATAAA AATTTGAATTATATATAAATA AATAA TAGTTATATATAATTCAGATA TTATTTATTTAAATG TERM 2840 1913311 - 1913353 + T 79 -8.9 -3.75911 | opp_overlap 1913311 1913313, overlap 1913309 1913306 TTTATTAGATAAAAA TTTGAATTATATATAAATA AATAA TAGTTATATATAATTCAGA TATTATTTATTTAAA TERM 2841 1913353 - 1913311 - T 80 -6.7 -5.00895 | opp_overlap 1913311 1913309 1913306, overlap 1913313 TTTATTAGATAAAAA TTTGAATTATATATAAATA AATAA TAGTTATATATAATTCAGA TATTATTTATTTAAA TERM 2842 1913351 - 1913313 - T 75 -9.3 -2.75165 | opp_overlap 1913311 1913309 1913306, overlap 1913311 TATTAGATAAAAATT TGAATTATATATAAATA AATAA TAGTTATATATAATTCA GATATTATTTATTTA CLI_1786 1913726 - 1913397 - | selenocystiene-contaning TERM 2843 1914602 - 1914581 - H 95 -11.7 -3.55842 | opp_overlap 1914580 1914579 TATAGAATATTATAA TCGCGAAAT ATAA ATTTCGCGA AGTTGTTGCTATTTT CLI_1787 1914643 - 1915623 + | site-specific tyrosine recombinase XerC TERM 2844 1915816 - 1915873 + T 76 -9.5 -2.78695 | opp_overlap 1915816 1915818, overlap 1915816 1915818 CTATAATTGATAAAG CACTTTAAAATCCTATAGACTCTATTA TGTT TTATACTGTATGTAGGATTTTAAAGTG CTTGATTTATATCAA CLI_1788 1916418 - 1915945 - | hypothetical protein lexA 1916716 - 1917321 + | LexA repressor TERM 2845 1917393 - 1917432 + T 100 -9.7 -5.1485 | gap 1, opp_overlap 1917393 GATTGTTAATAAAAA TAATTCCTAGGAGT-ATT AAGTG AATAACTTCTAGGAATTA TTTTTATATTAATTC TERM 2846 1917432 - 1917393 - T 90 -7.5 -5.07486 | gap 1, opp_overlap 1917393 GATTGTTAATAAAAA TAATTCCTAGGAGT-ATT AAGTG AATAACTTCTAGGAATTA TTTTTATATTAATTC CLI_1790 1918801 - 1917518 - | aluminum resistance protein TERM 2847 1918098 - 1918117 + gT 76 -7.8 -3.91196 | overlap 1918100 CCTGCCACTAAATCT GCGCCAAC GTCC GTTGGCTC TTTAGTATCTATAAA TERM 2848 1918100 - 1918115 + gT 79 -9 -3.54089 | overlap 1918098 TGCCACTAAATCTGC GCCAAC GTCC GTTGGC TCTTTAGTATCTATA CLI_1791 1918877 - 1918761 - | hypothetical protein TERM 2849 1918907 - 1918887 - R 87 -6.2 -5.80248 | opp_overlap 1918887 TAACATATAAAAAAA GAATAGGC AATTA ACCTATTC TTTATCTTTATAATC hfq 1919159 - 1918902 - | RNA chaperone Hfq miaA 1920180 - 1919245 - | tRNA delta(2)-isopentenylpyrophosphate transferase CLI_1794 1922196 - 1920196 - | DNA mismatch repair protein TERM 2850 1920285 - 1920309 + g 88 -3 -6.08342 | AAGTATATGGATTAT TTAATATAAG CATGT CTTCTATTAA TTTTTTTATTTCTTC TERM 2851 1920364 - 1920382 + g 75 -7.4 -4.11061 | AACTGCAGATTTGCA TGCCAGTG TAG CAATGGCA TTATATTTTATTGTA TERM 2852 1921173 - 1921189 + g 79 -8.1 -3.88137 | opp_overlap 1921172 1921170 1921173 CATATATATTAATAT CTTCTTT ATT AAAGAAG TTTGTAAAAGATTCT mutS 1925140 - 1922342 - | DNA mismatch repair protein TERM 2853 1924101 - 1924117 + g 74 -6.7 -4.32951 | opp_overlap 1924116, overlap 1924116 TTTCCCACTATTCGT TCTATAT CAT ATATAGA TTTTAAATCTTCTTT TERM 2854 1925184 - 1925211 + r 72 -8.6 -3.20906 | opp_overlap 1925172 1925190, overlap 1925178 1925190 AAATTTAATCTTTTA AAAAAAGCTCTT ATTC AAGAGCTTTTTA ATTTATATTTAAATT TERM 2855 1925205 - 1925190 - R 100 -7.6 -5.41746 | opp_overlap 1925190 1925184 AATCTTTTAAAAAAA GCTCTT ATTC AAGAGC TTTTTAATTTATATT TERM 2856 1925190 - 1925205 + r 90 -7.6 -5.08367 | opp_overlap 1925190, overlap 1925184 AATCTTTTAAAAAAA GCTCTT ATTC AAGAGC TTTTTAATTTATATT miaB 1926572 - 1925220 - | tRNA-i(6)A37 thiotransferase enzyme MiaB TERM 2857 1926869 - 1926849 - H 72 -6.3 -4.40732 | opp_overlap 1926849 TAAATGACAAAAGAA TCATTAAAC GTT ATTTAATGA TAATTTATGACAAAA TERM 2858 1926924 - 1926934 + H 76 -2.6 -5.88061 | overlap 1926929 TTTAACATCACTGGA TTTT TTT AAAA TTTTTTTAATTTTTT TERM 2859 1926929 - 1926943 + H 78 -4.4 -5.51046 | overlap 1926924 CATCACTGGATTTTT TTAAAA TTT TTTTAA TTTTTTATATATTTA CLI_1797 1927044 - 1928234 + | aminotransferase, classes I and II TERM 2860 1928317 - 1928270 - f 79 -7.3 -4.57755 | opp_overlap 1928270 1928274, overlap 1928274 ACGTACTAGATAAAA TAAATTATCTCCTTTTAGGTT AAAATA AAACTAGAAGGAGATGATTTA TGTGTATGATGTAAA TERM 2861 1928270 - 1928317 + F 90 -11.7 -3.04269 | opp_overlap 1928270 1928274, overlap 1928274 ACGTACTAGATAAAA TAAATTATCTCCTTTTAGGTT AAAATA AAACTAGAAGGAGATGATTTA TGTGTATGATGTAAA TERM 2862 1928274 - 1928313 + F 79 -8.1 -4.18367 | opp_overlap 1928274 1928270, overlap 1928270 ACTAGATAAAATAAA TTATCTCCTTTTAGGTT AAAATA AAACTAGAAGGAGATGA TTTATGTGTATGATG CLI_1798 1928319 - 1928480 + | hypothetical protein TERM 2863 1929590 - 1929602 + G 71 -7.7 -3.48276 | AACTGTTATGGTAGC TCCAG CAG CTGGA TTCTATGCAACAGAA aspB-1 1928535 - 1929725 + | aspartate aminotransferase TERM 2864 1929716 - 1929760 + T 79 -8.9 -3.76888 | opp_overlap 1929723 1929730, overlap 1929718 1929730 1929756 1929757 1929759 TATAGAAAAATATAA TAACAAATAAAAAATAACCCT TTT GGGGTTATTTTTTATTTTATG TATTTATTATAAATA TERM 2865 1929718 - 1929758 + T 82 -9.3 -3.45784 | opp_overlap 1929723 1929730, overlap 1929716 1929730 1929756 1929757 TAGAAAAATATAATA ACAAATAAAAAATAACCCT TTT GGGGTTATTTTTTATTTTA TGTATTTATTATAAA TERM 2866 1929753 - 1929723 - T 100 -12.9 -4.58859 | opp_overlap 1929718 1929716 1929730, overlap 1929730 AAATATAATAACAAA TAAAAAATAACCC TTTTG GGGTTATTTTTTA TTTTATGTATTTATT TERM 2867 1929730 - 1929746 + T 95 -7.3 -5.8901 | opp_overlap 1929730 1929723, overlap 1929718 1929716 ATAACAAATAAAAAA TAACCCT TTT GGGGTTA TTTTTTATTTTATGT TERM 2868 1929746 - 1929730 - T 93 -6.6 -5.82036 | opp_overlap 1929718 1929716 1929730, overlap 1929723 ATAACAAATAAAAAA TAACCC TTTTG GGGTTA TTTTTTATTTTATGT TERM 2869 1929759 - 1929777 + T 70 -7.6 -3.36868 | overlap 1929716 1929757 1929756 TTATTTTTTATTTTA TGTATTTA TTA TAAATACA TGCTTTTCTTTATAT CLI_1800 1930622 - 1929756 - | acetyltransferase CLI_1801 1931762 - 1930704 - | putative spore coat protein TERM 2870 1931190 - 1931166 - G 73 -5.7 -4.67353 | opp_overlap 1931171, overlap 1931167 TGATTTATTTAAAAA GGAAAGTGCTA CCA TAGCCCTTTCA TAAAAACTATCTATA TERM 2871 1931189 - 1931167 - G 79 -9.2 -3.3993 | opp_overlap 1931171, overlap 1931166 GATTTATTTAAAAAG GAAAGTGCTA CCA TAGCCCTTTC ATAAAAACTATCTAT TERM 2872 1931951 - 1931909 - R 83 -6.1 -5.36965 | gap 1, opp_overlap 1931909 1931914, overlap 1931914 1931943 TAAGATTATAAAAAA TAAAATATATGTATTA-ATA TTTT CATCTAATACATATACTTTA TACATTTAAATTATA TERM 2873 1931946 - 1931914 - R 75 -3.8 -5.49579 | gap 1, opp_overlap 1931909 1931914, overlap 1931909 1931943 TTATAAAAAATAAAA TATATGTATTA-ATA TTTT CATCTAATACATATA CTTTATACATTTAAA CLI_1802 1933926 - 1932010 - | 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/S1 RNA-binding domain protein cmk 1934644 - 1933991 - | cytidylate kinase aroH 1935091 - 1934720 - | chorismate mutase TERM 2874 1935023 - 1935041 + g 76 -9 -3.48598 | opp_overlap 1935021 1935020, overlap 1935021 TTCTGAAAAAAGTTT TATTGAAG CTT CTTCAATA TATTTCACTTCATTC CLI_1805 1936314 - 1935091 - | pyridine nucleotide-disulphide oxidoreductase family protein TERM 2875 1935487 - 1935520 + g 73 -9.1 -2.53089 | opp_overlap 1935503, overlap 1935486 1935485 TTTAAAATCTTTTTG TATTCTTTCATCTAA ATCA TTAGATGAAAGAGCA GGTTTTAAATTTATG TERM 2876 1936553 - 1936600 + r 73 -8 -3.67976 | opp_overlap 1936553 1936566, overlap 1936566 TTTATAAAAATATAC TAAAAACGAAAAAGAGGCTTGA TAAC TCAAACCTCTTTTTTATTTATA TTTAAGATTAATACC TERM 2877 1936600 - 1936553 - R 79 -10.2 -2.75877 | opp_overlap 1936553 1936566, overlap 1936566 TTTATAAAAATATAC TAAAAACGAAAAAGAGGCTTGA TAAC TCAAACCTCTTTTTTATTTATA TTTAAGATTAATACC TERM 2878 1936587 - 1936566 - R 100 -9.5 -5.1971 | opp_overlap 1936553 1936566, overlap 1936553 ACTAAAAACGAAAAA GAGGCTTGA TAAC TCAAACCTC TTTTTTATTTATATT TERM 2879 1936566 - 1936587 + r 93 -7.3 -5.7827 | opp_overlap 1936566 1936553, overlap 1936553 ACTAAAAACGAAAAA GAGGCTTGA TAAC TCAAACCTC TTTTTTATTTATATT gluD 1937873 - 1936608 - | glutamate dehydrogenase, NAD-specific TERM 2880 1936846 - 1936862 + g 88 -5.9 -5.52079 | TTAGTTAATATGTCT GGAGTAA CTG TTATTCC TTTTTCTTTTAATAT TERM 2881 1937227 - 1937237 + g 79 -5.4 -5.25893 | CCTATACCTTGGATA GCTA ATT TAGC TTTTTTCATATCTAT TERM 2882 1938075 - 1938039 - R 77 -3.2 -5.80727 | gap 1, opp_overlap 1938048, overlap 1938048 AAAAATAATAAAAAA CAGAAAAAAGAGG-CAT AAAA ATGACCTCTTTTTTACA CAAGCTCTAAAAACA TERM 2883 1938066 - 1938048 - R 79 -3.9 -5.72118 | gap 1, opp_overlap 1938048, overlap 1938039 AAAAAACAGAAAAAA GAGG-CAT AAAA ATGACCTC TTTTTTACACAAGCT CLI_1807 1938992 - 1938108 - | RpiR family transcriptional regulator TERM 2884 1939045 - 1939089 + r 73 -6.8 -4.32951 | gap 1 ATGCATTATCTATTT CAGTT-TATCATCTATTGAAA ACTT TATCAATAGATGATGCAATTG TTTGTTAATTGAACT TERM 2885 1939203 - 1939232 + r 100 -9.5 -5.17054 | opp_overlap 1939207 TCATTGAAACGACTA TTAAGAGTATAGT TATG ACCATACTCTTAA TTTTTTAGATATTAT TERM 2886 1939228 - 1939207 - R 72 -8.1 -3.26473 | opp_overlap 1939203 TGAAACGACTATTAA GAGTATAGT TATG ACCATACTC TTAATTTTTTAGATA TERM 2887 1939246 - 1939287 + r 95 -10.5 -4.12072 | opp_overlap 1939244 1939247 1939256, overlap 1939247 AATTTTTTAGATATT ATTCACCAAATATAATTTT ACAT AAAACTATATTTGGTGAAA TTATTTACATTTTTT TERM 2888 1939286 - 1939247 - R 100 -16.2 -2.6927 | opp_overlap 1939246 1939247, overlap 1939244 1939256 ATTTTTTAGATATTA TTCACCAAATATAATTTT ACAT AAAACTATATTTGGTGAA ATTATTTACATTTTT TERM 2889 1939247 - 1939286 + r 100 -14 -3.04803 | opp_overlap 1939247 1939244 1939256, overlap 1939246 ATTTTTTAGATATTA TTCACCAAATATAATTTT ACAT AAAACTATATTTGGTGAA ATTATTTACATTTTT rluB 1940084 - 1939374 - | ribosomal large subunit pseudouridine synthase B TERM 2890 1940169 - 1940146 - R 75 -5.4 -4.96848 | GGTTTTATACAAAAA GTCAAAATTT AAGG AAATTATGAC GAACTTTTTAGAGTA TERM 2891 1940189 - 1940245 + r 90 -11.1 -3.21466 | opp_overlap 1940189 1940194 1940196, overlap 1940194 TTTTTAGAGTACAGA GTATAGATGTGGATGATTTTGTTTCGA TTC TCTACACAAAATCTTCCATATCTGTCC TCTGTTCGTTATACT TERM 2892 1940240 - 1940194 - R 76 -9.6 -2.90238 | opp_overlap 1940194 1940189, overlap 1940189 1940196 AGAGTACAGAGTATA GATGTGGATGATTTTGTTTCGA TTC TCTACACAAAATCTTCCATATC TGTCCTCTGTTCGTT TERM 2893 1940194 - 1940240 + r 88 -11.8 -2.9329 | opp_overlap 1940189 1940194 1940196, overlap 1940189 AGAGTACAGAGTATA GATGTGGATGATTTTGTTTCGA TTC TCTACACAAAATCTTCCATATC TGTCCTCTGTTCGTT TERM 2894 1940271 - 1940301 + r 100 -14.2 -3.49924 | opp_overlap 1940273 1940276 1940281, overlap 1940273 1940276 1940281 ATACTCTGTACTCTA AATAAGGAAAGTGC ATC GCACTTTCCTTATA TTATACTAATTTAGG TERM 2895 1940299 - 1940273 - R 100 -16.8 -3.60098 | opp_overlap 1940273 1940271 1940276 1940281, overlap 1940276 1940281 ACTCTGTACTCTAAA TAAGGAAAGTGC ATC GCACTTTCCTTA TATTATACTAATTTA TERM 2896 1940273 - 1940299 + r 100 -16.8 -3.31802 | opp_overlap 1940273 1940276 1940281, overlap 1940271 1940276 1940281 ACTCTGTACTCTAAA TAAGGAAAGTGC ATC GCACTTTCCTTA TATTATACTAATTTA TERM 2897 1940276 - 1940296 + r 100 -14.1 -3.7821 | opp_overlap 1940273 1940276 1940281, overlap 1940273 1940271 1940281 CTGTACTCTAAATAA GGAAAGTGC ATC GCACTTTCC TTATATTATACTAAT TERM 2898 1940296 - 1940276 - R 100 -14.1 -3.9392 | opp_overlap 1940276 1940273 1940271 1940281, overlap 1940273 1940281 CTGTACTCTAAATAA GGAAAGTGC ATC GCACTTTCC TTATATTATACTAAT TERM 2899 1940281 - 1940291 + r 71 -6.8 -4.09827 | opp_overlap 1940276 1940273 1940281, overlap 1940276 1940273 1940271 CTCTAAATAAGGAAA GTGC ATC GCAC TTTCCTTATATTATA TERM 2900 1940291 - 1940281 - R 71 -6.8 -4.14764 | opp_overlap 1940281 1940276 1940273 1940271, overlap 1940276 1940273 CTCTAAATAAGGAAA GTGC ATC GCAC TTTCCTTATATTATA TERM 2901 1940320 - 1940344 + r 73 -8.7 -2.85763 | opp_overlap 1940320, overlap 1940317 1940317 TACTAATTTAGGCAA TGTATTAGCTC CAT GAGGTAATACA TAAGTTTTTAGGTGT TERM 2902 1940344 - 1940320 - R 74 -8.7 -3.10409 | opp_overlap 1940320 1940317 1940317 TACTAATTTAGGCAA TGTATTAGCTC CAT GAGGTAATACA TAAGTTTTTAGGTGT CLI_1809 1941591 - 1940302 - | hypothetical protein CLI_1810 1942969 - 1941689 - | hypothetical protein TERM 2903 1942514 - 1942526 + g 85 -3.5 -5.67063 | GTTTTCCTTTTGGTA TAATA TTT TATTA TTTTTTTCTACTAAA TERM 2904 1943027 - 1943054 + r 78 -8.6 -3.88787 | opp_overlap 1943027 1943032, overlap 1943032 1943045 ATAATTCTAATTAAA TCAAAGCTTTAT TAGA ATTAAGCTTTGA TTTATAAAAATATAG TERM 2905 1943054 - 1943027 - R 78 -8.6 -3.9377 | opp_overlap 1943027 1943032 1943045, overlap 1943032 ATAATTCTAATTAAA TCAAAGCTTTAT TAGA ATTAAGCTTTGA TTTATAAAAATATAG TERM 2906 1943232 - 1943254 + r 91 -10.6 -3.82499 | opp_overlap 1943232 TTGCATATAAAAAAA GCACAGGC CCATATA GCCTGTGC TTTGGTCGGTTTAAT TERM 2907 1943254 - 1943232 - R 100 -11.3 -5.71712 | opp_overlap 1943232 TTGCATATAAAAAAA GCACAGGCC CATAT AGCCTGTGC TTTGGTCGGTTTAAT CLI_1811 1944668 - 1943265 - | glycosyl transferase, group 2 family protein CLI_1812 1945038 - 1945229 + | hypothetical protein TERM 2908 1945329 - 1945276 - f 74 -6.1 -4.60073 | opp_overlap 1945284, overlap 1945284 TATATAATTATAAAA CTAACAAAGCAAAGATGCCCGCTGT TTTT ATAGCGGGTATTTTTGCTTTTTTTA TTTCCTCATTAAGTA TERM 2909 1945321 - 1945284 - f 100 -9.9 -4.48176 | opp_overlap 1945284, overlap 1945276 TATAAAACTAACAAA GCAAAGATGCCCGCTGT TTTT ATAGCGGGTATTTTTGC TTTTTTTATTTCCTC TERM 2910 1945284 - 1945321 + F 100 -16.5 -5.99154 | opp_overlap 1945276 1945284 TATAAAACTAACAAA GCAAAGATGCCCGCTGT TTTT ATAGCGGGTATTTTTGC TTTTTTTATTTCCTC TERM 2911 1945489 - 1945475 - f 78 -4.4 -5.61689 | AAAATCAATAAAAAA TTTTAT GCT ATAAAA AAATATTATGGTATT CLI_1813 1945618 - 1947639 + | methyl-accepting chemotaxis protein TERM 2912 1947644 - 1947687 + T 100 -18.6 -3.37727 | opp_overlap 1947644 1947651, overlap 1947651 1947684 TTAAACTTTAACTAA TATAAAATGGAACCTAGATT AAAA AATCCAGGTTCCATTTTATA TTCCTATATATATTA TERM 2913 1947687 - 1947644 - T 100 -20.8 -3.3907 | opp_overlap 1947644 1947651 1947684, overlap 1947651 TTAAACTTTAACTAA TATAAAATGGAACCTAGATT AAAA AATCCAGGTTCCATTTTATA TTCCTATATATATTA TERM 2914 1947680 - 1947651 - T 100 -14.5 -4.73864 | opp_overlap 1947644 1947651, overlap 1947644 TTAACTAATATAAAA TGGAACCTAGATT AAAA AATCCAGGTTCCA TTTTATATTCCTATA TERM 2915 1947651 - 1947680 + T 100 -12.3 -4.7219 | opp_overlap 1947651 1947644, overlap 1947644 TTAACTAATATAAAA TGGAACCTAGATT AAAA AATCCAGGTTCCA TTTTATATTCCTATA CLI_1814 1948369 - 1947683 - | putative cytochrome c-type biogenesis protein CLI_1815 1948802 - 1948371 - | thioredoxin family protein TERM 2916 1948886 - 1948841 - R 81 -10.8 -2.66977 | opp_overlap 1948841 1948847 1948850, overlap 1948839 1948847 TATAATGTAAAAATT TCAAAATAACCTTCAAAGAA TATAAT TTCTCTGAAGGCTATTTCAA TTTTAACATACAATT TERM 2917 1948880 - 1948847 - R 95 -9.8 -4.31329 | opp_overlap 1948841 1948847 1948850, overlap 1948841 1948839 GTAAAAATTTCAAAA TAACCTTCAAAGAA TATAAT TTCTCTGAAGGCTA TTTCAATTTTAACAT CLI_1816 1949753 - 1948917 - | carbon-nitrogen family hydrolase TERM 2918 1949510 - 1949528 + g 80 -2.4 -5.68039 | CTGCTACAATATAAA GCTCTAAA TCT TTTGCAGC TTTTTTTATAGCTTT CLI_1817 1950438 - 1949884 - | hypothetical protein TERM 2919 1950488 - 1950533 + H 84 -5.1 -5.72622 | opp_overlap 1950489 1950497 1950504, overlap 1950489 1950497 GTGCATTTTTAATAT ATTCTACAATTAAAAATAAAA GTCC TTTTATTTTTAATTGTTAAAG TTTTTTGTTTATAGA TERM 2920 1950532 - 1950489 - H 85 -10.8 -3.07895 | opp_overlap 1950489 1950488 1950497, overlap 1950497 1950504 TGCATTTTTAATATA TTCTACAATTAAAAATAAAA GTCC TTTTATTTTTAATTGTTAAA GTTTTTTGTTTATAG TERM 2921 1950489 - 1950532 + H 79 -8.6 -4.01946 | opp_overlap 1950489 1950497 1950504, overlap 1950488 1950497 TGCATTTTTAATATA TTCTACAATTAAAAATAAAA GTCC TTTTATTTTTAATTGTTAAA GTTTTTTGTTTATAG TERM 2922 1950497 - 1950524 + H 79 -8.8 -3.75617 | opp_overlap 1950489 1950497 1950504, overlap 1950489 1950488 TAATATATTCTACAA TTAAAAATAAAA GTCC TTTTATTTTTAA TTGTTAAAGTTTTTT TERM 2923 1950524 - 1950497 - H 77 -8.8 -3.36648 | opp_overlap 1950497 1950489 1950488, overlap 1950489 1950504 TAATATATTCTACAA TTAAAAATAAAA GTCC TTTTATTTTTAA TTGTTAAAGTTTTTT TERM 2924 1951121 - 1951139 + G 83 -7.6 -4.55673 | opp_overlap 1951120 1951125, overlap 1951125 AAGATAGTAAAGGAG CAAATAAT ATA ATTATTTG TTTTATAATGTCTTT CLI_1818 1950850 - 1952283 + | monovalent cation:proton antiporter-2 (CPA2) family protein TERM 2925 1952307 - 1952360 + T 100 -21.7 -3.34236 | gap 1, opp_overlap 1952307 1952313, overlap 1952313 ACGATAAAGATTAAA TCAAAAGGCTATAATTTCT-AGAATA TTA TATTCTTAGAAGTTATAGCCTTTTGA TTATAAAATAAGTTT TERM 2926 1952360 - 1952307 - T 100 -19.5 -4.05181 | gap 1, opp_overlap 1952307 1952313, overlap 1952313 ACGATAAAGATTAAA TCAAAAGGCTATAATTTCT-AGAATA TTA TATTCTTAGAAGTTATAGCCTTTTGA TTATAAAATAAGTTT TERM 2927 1952313 - 1952354 + T 100 -14.9 -4.49389 | gap 1, opp_overlap 1952307 1952313, overlap 1952307 AAGATTAAATCAAAA GGCTATAATTTCT-AGAATA TTA TATTCTTAGAAGTTATAGCC TTTTGATTATAAAAT TERM 2928 1952354 - 1952313 - T 100 -12.7 -4.61284 | gap 1, opp_overlap 1952313 1952307, overlap 1952307 AAGATTAAATCAAAA GGCTATAATTTCT-AGAATA TTA TATTCTTAGAAGTTATAGCC TTTTGATTATAAAAT pcaC-1 1952752 - 1952408 - | 4-carboxymuconolactone decarboxylase CLI_1820 1953405 - 1952890 - | acetyltransferase TERM 2929 1953539 - 1953587 + r 100 -10 -5.3658 | gap 1, opp_overlap 1953542, overlap 1953542 1953550 TTATATTATATCTAA AAATATAGAAATACCACAAGGAA TATA TTCCTTGTGGTATTT-TATACTA TTTTATTTTTCTAAT TERM 2930 1953542 - 1953584 + r 100 -16.1 -3.1503 | gap 1, opp_overlap 1953542, overlap 1953539 1953550 TATTATATCTAAAAA TATAGAAATACCACAAGGAA TATA TTCCTTGTGGTATTT-TATA CTATTTTATTTTTCT TERM 2931 1953584 - 1953542 - R 100 -16.1 -4.7173 | gap 1, opp_overlap 1953539 1953542 1953550 TATTATATCTAAAAA TATAGAAATACCACAAGGAA TATA TTCCTTGTGGTATTT-TATA CTATTTTATTTTTCT TERM 2932 1953550 - 1953577 + r 100 -15.8 -4.60713 | opp_overlap 1953542, overlap 1953542 1953539 CTAAAAATATAGAAA TACCACAAGGAA TATA TTCCTTGTGGTA TTTTATACTATTTTA CLI_1821 1954084 - 1953590 - | putative lipoprotein CLI_1822 1954627 - 1954316 - | hypothetical protein CLI_1823 1954841 - 1954608 - | hypothetical protein CLI_1824 1954975 - 1955217 + | hypothetical protein CLI_1825 1955220 - 1956944 + | sensory box-containing [Fe] hydrogenase CLI_1826 1956941 - 1958110 + | sporulation domain-containing protein CLI_1827 1958246 - 1959985 + | sensory box-containing [Fe] hydrogenase TERM 2933 1960123 - 1960152 + T 89 -12.3 -2.84 | opp_overlap 1960123 1960122, overlap 1960119 1960132 1960147 1960151 TAAAATTTTAACAAC GGTGGAAAAGTCA TTTT TGGCTTTTTCACC TAGTTCTCACATCCT TERM 2934 1960465 - 1960441 - T 82 -9.5 -3.34192 | AAGTCTTTTAATTAA CTAGAATATAT TTA ACATATTCTAG GAAGCATATCTCCTT hypE 1961456 - 1960452 - | hydrogenase expression/formation protein HypE TERM 2935 1961104 - 1961126 + g 71 -4.8 -4.82819 | ATTAAGACATTAGCT TCTTTAGCAG TAT CTGCCATAGA TTTTATTATAATCTC hypD 1962696 - 1961623 - | hydrogenase expression/formation protein HypD CLI_1830 1962916 - 1962689 - | hypothetical protein hypF 1965317 - 1962879 - | [NiFe] hydrogenase maturation protein HypF TERM 2936 1963940 - 1963960 + gr 73 -5.5 -4.57921 | opp_overlap 1963938 TCATGCACACATATC CCTTTTG AGACAGG CAAAAGG TGTTTTTTTCTTCTG CLI_1832 1965561 - 1965301 - | hypothetical protein CLI_1833 1966330 - 1965815 - | heme/steroid binding domain-containing protein CLI_1834 1966906 - 1966490 - | hydrogenase maturation protease hupL 1968354 - 1966939 - | [Ni/Fe] hydrogenase, large subunit TERM 2937 1967305 - 1967318 + g 81 -2.5 -5.75822 | opp_overlap 1967305, overlap 1967296 TTCTGATATATTATA TAATA TATT TATTA TTTTTTTAGTTTCTA hupS 1969328 - 1968456 - | [Ni/Fe] hydrogenase, small subunit CLI_1837 1969596 - 1970297 + | TraX family protein TERM 2938 1970438 - 1970393 - f 83 -7.3 -4.96848 | gap 1, opp_overlap 1970393, overlap 1970394 1970396 1970397 TTTCTGATATAAAAA TTAGGTAGGGTTAATATTTT TTTACTT AAAATATTAACCCTAC-TAC ATATAATAAATAAAT TERM 2939 1970437 - 1970394 - f 91 -10.8 -3.57627 | gap 1, opp_overlap 1970393, overlap 1970393 1970396 1970397 TTCTGATATAAAAAT TAGGTAGGGTTAATATTTT TTTACTT AAAATATTAACCCTAC-TA CATATAATAAATAAA TERM 2940 1970436 - 1970396 - f 95 -11.5 -3.35962 | opp_overlap 1970393, overlap 1970394 1970393 1970397 CTGATATAAAAATTA GGTAGGGTTAATATTTT TTTACTT AAAATATTAACCCTACT ACATATAATAAATAA TERM 2941 1970435 - 1970397 - f 100 -15 -2.60854 | opp_overlap 1970393, overlap 1970396 1970394 1970393 TGATATAAAAATTAG GTAGGGTTAATATTTT TTTACTT AAAATATTAACCCTAC TACATATAATAAATA TERM 2942 1970669 - 1970711 + F 80 -10.1 -2.76964 | gap 1, overlap 1970666 GTGGTTGTACGTTTT CCACCTTGGGCTATAGATGA TTTT TCAT-TATAGCTTAAGGGGG TGGTATTGGATATGC TERM 2943 1970895 - 1970855 - g 95 -11.3 -3.84712 | opp_overlap 1970855, overlap 1970863 GAAGTTGATAGCAAA GAGAAAAAGCACCCATCCT CCA AAGATTAGTGCCTTTTCCC TTGTTTAACATATTT CLI_1838 1970717 - 1970884 + | hypothetical protein TERM 2944 1970887 - 1970863 - T 78 -5.7 -5.22289 | opp_overlap 1970855, overlap 1970855 TAGCAAAGAGAAAAA GCACCCATCCT CCA AAGATTAGTGC CTTTTCCCTTGTTTA TERM 2945 1971012 - 1971036 + T 100 -11.5 -4.54821 | overlap 1971004 AAACGTTCTAGGATC GGCTTAGTGTT CTC AGCACTGAGCC TTTTCTAATTAGAAT TERM 2946 1971398 - 1971412 + T 81 -7.2 -4.76193 | TTATATTAATTATTT TCTATG AAA CATAGA TTTTATATTATCATT carB 1974766 - 1971560 - | carbamoyl phosphate synthase large subunit carA 1975843 - 1974794 - | carbamoyl phosphate synthase small subunit TERM 2947 1975914 - 1975958 + H 100 -11.2 -4.12901 | gap 1, opp_overlap 1975914 ATTTTTAAAACAAAA GGGAAATAAAAAGATTTATGT CAAA AAAT-AATCTTTTTATTTCCC TTTATATAAATTTTA TERM 2948 1975958 - 1975914 - H 100 -11.2 -5.08255 | gap 1, opp_overlap 1975914 ATTTTTAAAACAAAA GGGAAATAAAAAGATTTATGT CAAA AAAT-AATCTTTTTATTTCCC TTTATATAAATTTTA TERM 2949 1976054 - 1976076 + H 80 -2.8 -6.13503 | TCTCACAGGACCAAT TTAAAGTGTA TTC TTTACTTTAA TTTTTTTTATTAATC CLI_1841 1976360 - 1976527 + | hypothetical protein TERM 2950 1976530 - 1976506 - T 78 -5.7 -5.22289 | opp_overlap 1976494 TAGCAAAGAGAAAAA GCACCCATCCT CCA AAGATTAGTGC TTTTTTCCTTGTTTA TERM 2951 1976654 - 1976678 + T 100 -13.7 -4.54821 | overlap 1976646 AAACGTTCTAGGATC GGCTTAGTGTT CTC AGCACTAAGCC TTTTCTAATTAGGAT TERM 2952 1976772 - 1976757 - T 70 -4.8 -4.83269 | ATATTATATCAAAAA GTTTAT AAAA ATAAAC ATAATAACTCTATTA CLI_1842 1976893 - 1976759 - | hypothetical protein TERM 2953 1977533 - 1977543 + r 70 -3.2 -5.4505 | GCCTATATTCTTTTT GAGT ACA GCTC TTTTTTCTTCGGGAA TERM 2954 1978316 - 1978296 - R 79 -8.3 -4.15114 | overlap 1978297 AATAGCAAATAATAA TCCACTAGT TAA ACTAGTGGT CAGGCTGTTGATAAA TERM 2955 1978315 - 1978297 - R 90 -11.8 -3.07441 | overlap 1978296 ATAGCAAATAATAAT CCACTAGT TAA ACTAGTGG TCAGGCTGTTGATAA TERM 2956 1978319 - 1978349 + r 100 -15.7 -3.89215 | TTAAACTAGTGGTCA GGCTGTTGATAAA CATAT TTTATCAACAGCC TTTAAATTTATACAA TERM 2957 1978426 - 1978413 - R 75 -3.7 -5.45726 | opp_overlap 1978414, overlap 1978414 TATAGGTTAAAAAAA TGCCC CGGA GGGCT TTTAGGGAGGATGAA TERM 2958 1978414 - 1978425 + r 73 -7.2 -4.08216 | opp_overlap 1978413 1978414 ATAGGTTAAAAAAAT GCCC CGGA GGGC TTTTAGGGAGGATGA TERM 2959 1978425 - 1978414 - R 71 -7.2 -3.86351 | opp_overlap 1978414, overlap 1978413 ATAGGTTAAAAAAAT GCCC CGGA GGGC TTTTAGGGAGGATGA TERM 2960 1979585 - 1979598 + r 73 -2.3 -5.64006 | opp_overlap 1979576 1979580, overlap 1979586 GAAGAAGATAGCGAG AGTGC TATC GCACG TTTTTTTCATTCGAT TERM 2961 1979641 - 1979694 + r 100 -17.2 -3.54543 | opp_overlap 1979644, overlap 1979627 1979644 ACCTATTATTGCAAG TAATGGGTATGTAGGTAAATTTGT TTTTAC ATAAATTTACCTGCATACCCATAA TTTCGCAAAATGAAT TERM 2962 1979644 - 1979691 + r 100 -18.9 -2.90813 | opp_overlap 1979644, overlap 1979627 1979641 TATTATTGCAAGTAA TGGGTATGTAGGTAAATTTGT TTTTAC ATAAATTTACCTGCATACCCA TAATTTCGCAAAATG TERM 2963 1979691 - 1979644 - R 100 -14.5 -3.36289 | opp_overlap 1979627 1979644 1979641 TATTATTGCAAGTAA TGGGTATGTAGGTAAATTTGT TTTTAC ATAAATTTACCTGCATACCCA TAATTTCGCAAAATG CLI_1845 1980703 - 1979978 - | hypothetical protein CLI_1846 1981687 - 1980896 - | hypothetical protein CLI_1847 1982861 - 1983967 + | hypothetical protein TERM 2964 1984000 - 1984024 + T 81 -8 -4.4078 | opp_overlap 1984000 1984018 1984022 AAATAATTTAACAAA GGGCTTATTT GAATA AAATAAGCTC TTTTGCTTAAAGAGA TERM 2965 1984066 - 1984038 - T 87 -9.8 -3.34398 | gap 1, opp_overlap 1984039 1984040 1984042, overlap 1984036 1984040 TCTTTTGCTTAAAGA GATAGCCTAAACA CTAT TGTTTAGGCTA-C TTATATTAACTATCA TERM 2966 1984039 - 1984066 + T 90 -10 -3.70446 | opp_overlap 1984038 1984036 1984040, overlap 1984040 1984042 CTTTTGCTTAAAGAG ATAGCCTAAACA CTAT TGTTTAGGCTAC TTATATTAACTATCA TERM 2967 1984040 - 1984065 + T 93 -13.5 -2.81786 | opp_overlap 1984038 1984036 1984040, overlap 1984039 1984042 TTTTGCTTAAAGAGA TAGCCTAAACA CTAT TGTTTAGGCTA CTTATATTAACTATC TERM 2968 1984065 - 1984040 - T 100 -13.5 -3.24232 | opp_overlap 1984040 1984039 1984042, overlap 1984038 1984036 TTTTGCTTAAAGAGA TAGCCTAAACA CTAT TGTTTAGGCTA CTTATATTAACTATC TERM 2969 1984042 - 1984063 + T 90 -11.7 -2.95007 | opp_overlap 1984040 1984038 1984036, overlap 1984040 1984039 TTGCTTAAAGAGATA GCCTAAACA CTAT TGTTTAGGC TACTTATATTAACTA CLI_1848 1985650 - 1984094 - | ABC transporter, ATP-binding protein CLI_1849 1987745 - 1986012 - | [Fe] hydrogenase TERM 2970 1987341 - 1987363 + g 72 -6.4 -4.27117 | opp_overlap 1987340 1987346 ATCTATAGGATACAT TGAAACATCA CCT TGATATTTCA TTTCTCTTATACCCA CLI_1850 1989660 - 1987765 - | putative [Fe] hydrogenase, electron-transfer subunit TERM 2971 1988634 - 1988621 - G 72 -8.1 -3.34398 | GGCTTGTTCCAAAGA CCAGC TTCT GCTGG GAATGGTGGTTTATA TERM 2972 1989220 - 1989249 + g 93 -8.1 -5.31519 | overlap 1989212 TCTTTTTTGTTTTTT GTAAAAAGACA TTTCATCT TGTCTTTTTAC TTTTTCTTTAAGTGT CLI_1851 1990151 - 1989672 - | putative Fe] hydrogenase, electron-transfer subunit TERM 2973 1990013 - 1989980 - G 83 -9.7 -3.5936 | opp_overlap 1989978 CGTAAACCTTTGAAA CAGGAATGTCTAGCT TTTT AGCTACAAATTCCTG CACTTCATTTGGAAG CLI_1852 1991825 - 1990638 - | monovalent cation:proton antiporter-2 (CPA2) family protein TERM 2974 1991864 - 1991894 + r 83 -11.4 -2.75481 | opp_overlap 1991865, overlap 1991874 CTCAAAACGCAAAAA ATCCTACAAATAAT TAT ATTATTTGTAGGAG TCATTAGCATTACGC TERM 2975 1991893 - 1991865 - R 100 -14.9 -5.2696 | opp_overlap 1991864 1991874 TCAAAACGCAAAAAA TCCTACAAATAAT TAT ATTATTTGTAGGA GTCATTAGCATTACG CLI_1853 1992962 - 1992084 - | ADP-ribosylglycohydrolase family protein CLI_1854 1993204 - 1994298 + | hypothetical protein TERM 2976 1994335 - 1994387 + T 86 -9.7 -4.1721 | opp_overlap 1994335 1994341 1994367, overlap 1994341 AGGGATATCTCAAAA TTAAAATAGATTTAATTTTAAAACT CGA AATATAAAAATTAAATCTATTTTAA TTTTGAGATATCCCT TERM 2977 1994387 - 1994335 - T 100 -11.9 -4.1721 | opp_overlap 1994335 1994341, overlap 1994341 1994367 AGGGATATCTCAAAA TTAAAATAGATTTAATTTTAAAACT CGA AATATAAAAATTAAATCTATTTTAA TTTTGAGATATCCCT TERM 2978 1994381 - 1994341 - T 77 -6.5 -4.67641 | opp_overlap 1994335 1994341, overlap 1994335 1994367 ATCTCAAAATTAAAA TAGATTTAATTTTAAAACT CGA AATATAAAAATTAAATCTA TTTTAATTTTGAGAT dacB 1995550 - 1994414 - | D-alanyl-D-alanine carboxypeptidase CLI_1856 1995734 - 1996246 + | hypothetical protein TERM 2979 1996293 - 1996253 - f 70 -5.1 -4.81357 | opp_overlap 1996253 AGAGCATAAAATAAA TTTATTAATGAAATTTTTA ATA TAAAAAATCTATTAATAAA TTATATAAGGAGGTT TERM 2980 1996545 - 1996564 + G 75 -4.3 -5.1861 | overlap 1996540 GGTTCTGGAGCGGGT GTTACTG TAAAAC CAGTAGC TTTTTTAGTAATAAA ytfJ 1996314 - 1996754 + | sporulation protein YtfJ TERM 2981 1996788 - 1996756 - T 95 -10.8 -3.87551 | opp_overlap 1996761, overlap 1996761 ATCATGAAATCTAAA TAAAAGCCCCTA TTACATACT TAGGGGCTTTTA CACTATTTTTTAGTT TERM 2982 1996761 - 1996783 + T 70 -6.3 -4.24338 | opp_overlap 1996761 1996756 GAAATCTAAATAAAA GCCCCTA TTACATACT TAGGGGC TTTTACACTATTTTT TERM 2983 1996783 - 1996761 - T 78 -6.3 -4.96468 | opp_overlap 1996761, overlap 1996756 GAAATCTAAATAAAA GCCCCTA TTACATACT TAGGGGC TTTTACACTATTTTT scpB 1997396 - 1996815 - | segregation and condensation protein B scpA 1998135 - 1997389 - | segregation and condensation protein A CLI_1860 1998700 - 1998110 - | hypothetical protein TERM 2984 1998585 - 1998568 - G 70 -5.7 -4.20769 | opp_overlap 1998556, overlap 1998554 ATATTCTAACATAAA TATTAGA ATAA TCTAATA AAATATTTTCTAATC TERM 2985 1998890 - 1998866 - R 100 -11.6 -4.48299 | opp_overlap 1998866 TCATACTTAAATAAA GCTAACATGA AATAA TCATGTTAGC TTTTATCCTCCTTAT TERM 2986 1998866 - 1998890 + r 100 -11.6 -4.51699 | opp_overlap 1998866 TCATACTTAAATAAA GCTAACATGA AATAA TCATGTTAGC TTTTATCCTCCTTAT dacF 2000147 - 1998924 - | D-alanyl-D-alanine carboxypeptidase TERM 2987 1999784 - 1999798 + g 74 -2.1 -5.51165 | gap 1, opp_overlap 1999784, overlap 1999775 1999785 CTACATCTAAAAGCA TGGTGC TTCC GC-CCA TTTTTTTAGCGTTTT CLI_1862 2000992 - 2000270 - | hypothetical protein TERM 2988 2001098 - 2001149 + r 72 -8.4 -3.21998 | gap 1, opp_overlap 2001091 2001096, overlap 2001097 2001106 ATATATTACCTAACG TGTT-AGGACCATTAACCTATTTTA TAT TTAAATATGTTAATGGTCCTTAAGA ATTATTTTAATTTAA TERM 2989 2001106 - 2001140 + r 72 -8.8 -2.74286 | opp_overlap 2001096, overlap 2001098 2001097 CCTAACGTGTTAGGA CCATTAACCTATTTTA TAT TTAAATATGTTAATGG TCCTTAAGAATTATT CLI_1863 2002209 - 2001151 - | endonuclease/exonuclease/phosphatase family protein TERM 2990 2001596 - 2001612 + g 78 -9.5 -3.29263 | AATTCCCTATCATTT TCTAGAG ATA CTCTAGA TTCTAAAAAACATCT TERM 2991 2002306 - 2002282 - R 100 -8.7 -5.52023 | opp_overlap 2002282 ATTATCAATAAAAAA CACAATAAACC TAA AGCTTATTGTG TAAATTTATATTTAT CLI_1864 2002599 - 2002351 - | hypothetical protein TERM 2992 2002562 - 2002574 + g 75 -4.9 -5.08601 | TTCGGGGCAATCTCA TTTCT AGG AGAAA TTTTTATTGCCATAA pdp 2004010 - 2002706 - | pyrimidine-nucleoside phosphorylase TERM 2993 2003431 - 2003445 + g 82 -4.3 -5.58074 | CTAAAATTATGGCAT TAGCT CCTGC AGCTA TTTTTTTGCTCATTA punA 2005111 - 2004296 - | purine nucleoside phosphorylase xerD 2006024 - 2005149 - | tyrosine recombinase XerD TERM 2994 2005958 - 2005977 + g 81 -3.6 -5.54907 | CTCTTCTATAAGCCT CTAAAGTA TTTT TACTTAAG TTTTTCTTTTGTAAA CLI_1868 2006303 - 2006076 - | hypothetical protein TERM 2995 2006274 - 2006260 - G 73 -3.6 -5.31545 | overlap 2006262 AATAATATTAAAAAA CACTTT ATT AAAGTA ACTATGGCTTTTTTA CLI_1869 2006947 - 2006294 - | putative sporulation protein TERM 2996 2006442 - 2006415 - G 71 -2.1 -5.49568 | gap 1, overlap 2006423 AATGCAAAAGAAAAA GAATAGGAGGTA GCTCT TACC-CATATTC CATTTTGAAATCCCC CLI_1870 2006988 - 2007101 + | hypothetical protein CLI_1871 2007690 - 2007154 - | NUDIX family hydrolase TERM 2997 2007605 - 2007616 + g 72 -4.4 -5.07652 | overlap 2007596 GATTCTTTACCATTT GGTA ATTT TACC TTTTGTTTTACAACA TERM 2998 2008154 - 2008125 - R 73 -4.4 -5.20216 | opp_overlap 2008125 TAGAGCACTAAAAAA TAGAAGGGAT TAAATTTAGT ATCCCCTCTA TTTTTATATAAATTA CLI_1872 2009700 - 2008174 - | amino acid permease family protein TERM 2999 2010057 - 2010095 + r 100 -12.2 -3.86346 | opp_overlap 2010064 TCATCATAATCCTCT CTAATTATTATTTTTTAA TCA TTAATAAATAATAATTAG TTTATAAACAAATAA TERM 3000 2010130 - 2010113 - R 80 -6.3 -5.22481 | opp_overlap 2010113, overlap 2010104 TATAAACAAATAAAA GCTCTAG ATTT CTAAAGC TTTCTTTGTTTGTAA TERM 3001 2010396 - 2010425 + r 100 -15.2 -5.75945 | opp_overlap 2010401 2010404 ATATATTTTTCCATG CAAAAGAACCCC TTTATT GGGGTTCTTTTG TTTTTTTTGGGAAGT TERM 3002 2010420 - 2010401 - R 86 -9.3 -4.18018 | opp_overlap 2010396, overlap 2010404 TTTTTCCATGCAAAA GAACCCC TTTATT GGGGTTC TTTTGTTTTTTTTGG CLI_1873 2011272 - 2010517 - | nlpC/P60 family protein TERM 3003 2011519 - 2011495 - R 82 -5.6 -5.62045 | opp_overlap 2011517 2011518 ATATATAATAAAAAA GAGCCCCCAC TATAT GCATGGGCTC CTTTTTATTCAAGAA TERM 3004 2011786 - 2011835 + r 81 -10.6 -2.61869 | gap 1, opp_overlap 2011786 2011793 2011797, overlap 2011793 2011797 TACCTTGTCTACAAA TTGCAAACAAACATAATATATTT GTTTA AAATATATTATGTTTGTTA-CAA CTTAGTAATTTATTA TERM 3005 2011835 - 2011786 - R 100 -12.8 -3.86015 | gap 1, opp_overlap 2011786 2011793 2011797, overlap 2011793 2011797 TACCTTGTCTACAAA TTGCAAACAAACATAATATATTT GTTTA AAATATATTATGTTTGTT-ACAA CTTAGTAATTTATTA TERM 3006 2011829 - 2011793 - R 100 -14.2 -3.74347 | opp_overlap 2011786 2011793 2011797, overlap 2011786 2011797 TCTACAAATTGCAAA CAAACATAATATATTT GTTTA AAATATATTATGTTTG TTACAACTTAGTAAT TERM 3007 2011825 - 2011797 - R 93 -9.2 -4.4784 | opp_overlap 2011793 2011786 2011797, overlap 2011793 2011786 CAAATTGCAAACAAA CATAATATATTT GTTTA AAATATATTATG TTTGTTACAACTTAG TERM 3008 2011797 - 2011825 + r 86 -9.2 -4.183 | opp_overlap 2011797 2011793 2011786, overlap 2011793 2011786 CAAATTGCAAACAAA CATAATATATTT GTTTA AAATATATTATG TTTGTTACAACTTAG CLI_1874 2012992 - 2012414 - | hypothetical protein TERM 3009 2012760 - 2012782 + g 75 -9.2 -2.99649 | opp_overlap 2012735 2012760 AGTGCAGCTTGAACA TTAGCAGGGA TAC TGCCTGCTAA TATATCTCCAAGTAT TERM 3010 2012782 - 2012760 - G 75 -9.2 -3.04263 | opp_overlap 2012760, overlap 2012735 AGTGCAGCTTGAACA TTAGCAGGGA TAC TGCCTGCTAA TATATCTCCAAGTAT CLI_1875 2013526 - 2013245 - | integrase domain-containing protein TERM 3011 2014369 - 2014340 - R 100 -8.8 -5.16038 | opp_overlap 2014340 2014343 ACACAAGAAATAAAA TAAGGTAAAGTA AATTAA TACTCTACCTTA TATAATGTAGTAAAA CLI_1876 2014995 - 2014408 - | hypothetical protein TERM 3012 2014489 - 2014507 + g 72 -6.1 -4.24413 | opp_overlap 2014492, overlap 2014495 ATCTTTAGGTATATC GAATACT AAGAA AGTATTC TTGTTTATTCCTGCA CLI_1877 2015882 - 2015124 - | N-acetylmuramoyl-L-alanine amidase CLI_1878 2016117 - 2015923 - | hypothetical protein TERM 3013 2016019 - 2016001 - G 70 -6.1 -4.11623 | opp_overlap 2016001 2016000 2016003 TATTATTAAAGTAAA TACAGAA AGAAA TTCTGTA CTTGATATGTTAGTT CLI_1879 2016385 - 2016131 - | hypothetical protein TERM 3014 2016438 - 2016425 - R 79 -3.8 -5.71295 | AGACAAAAATAAAAA GACC TTATAT GGTC CCTACTTTGTCTTTA TERM 3015 2016519 - 2016502 - R 70 -4.1 -5.26875 | TTGTGAACTAAAAAA GACACCT TATT AAGTGCC TTCCAGTTCTTATTA CLI_1880 2016726 - 2016532 - | hypothetical protein CLI_1881 2017288 - 2017121 - | hypothetical protein CLI_1882 2017544 - 2017329 - | hypothetical protein CLI_1883 2017905 - 2017546 - | hypothetical protein CLI_1884 2018508 - 2017921 - | hypothetical protein CLI_1885 2018987 - 2018526 - | hypothetical protein CLI_1886 2019805 - 2018984 - | hypothetical protein CLI_1887 2020969 - 2019812 - | hypothetical protein CLI_1888 2021842 - 2020973 - | hypothetical protein TERM 3016 2021803 - 2021772 - G 83 -6.6 -5.14563 | opp_overlap 2021772 TTTTCTAGGAAAAAA GGACTCCAAATAGA AAAT TCTATCTGTTGTCC TTTCTCATTTTCAAA CLI_1889 2025358 - 2021858 - | TP901 family phage tail tape measure protein TERM 3017 2022762 - 2022777 + g 70 -6.2 -4.13711 | TTTTTCTTATTCTCC CAACTA GTTG TAGTTG TTTGTAATATTTTAG TERM 3018 2023153 - 2023172 + g 73 -3.7 -5.243 | AAATTTTACTAGATT TTTTACT CATATC AGTAAAA TTTTTTAATACTTTA TERM 3019 2023401 - 2023411 + g 78 -3.2 -5.54264 | overlap 2023393 2023408 AATAGGTCTACACTT GGTG TTG CATC TTTTTTTAGATGTTT CLI_1890 2025554 - 2025375 - | hypothetical protein TERM 3020 2025565 - 2025617 + r 100 -6.6 -6.28401 | opp_overlap 2025572 2025573, overlap 2025570 2025573 TGCACCTTTGCTATA TAAAAAAGCCAGTCAAAATCTA TTAAATATT TAGATTTTGACTGGTTATTTAG TTTTTTTCTTTTTTA TERM 3021 2025570 - 2025612 + r 89 -8.7 -4.57518 | opp_overlap 2025572 2025573, overlap 2025565 2025573 CTTTGCTATATAAAA AAGCCAGTCAAAATCTA TTAAATATT TAGATTTTGACTGGTTA TTTAGTTTTTTTCTT TERM 3022 2025610 - 2025572 - R 100 -9.1 -5.36441 | opp_overlap 2025570 2025565 2025573, overlap 2025573 TTGCTATATAAAAAA GCCAGTCAAAATCTA TTAAATATT TAGATTTTGACTGGT TATTTAGTTTTTTTC TERM 3023 2025609 - 2025573 - R 95 -12.6 -3.81141 | opp_overlap 2025570 2025565 2025573, overlap 2025572 TGCTATATAAAAAAG CCAGTCAAAATCTA TTAAATATT TAGATTTTGACTGG TTATTTAGTTTTTTT TERM 3024 2025573 - 2025609 + r 100 -12.6 -4.32035 | opp_overlap 2025573 2025572, overlap 2025570 2025565 TGCTATATAAAAAAG CCAGTCAAAATCTA TTAAATATT TAGATTTTGACTGG TTATTTAGTTTTTTT CLI_1891 2025958 - 2025614 - | hypothetical protein TERM 3025 2026017 - 2025991 - R 70 -4.6 -5.06816 | gap 1, opp_overlap 2025992 2026016, overlap 2025994 ATTTTTTAATAAAAA TA-AGGGTAGA AATCAA TCTACCCTATA AATTATTTATCTAAT TERM 3026 2026013 - 2025994 - R 83 -7.9 -4.63592 | opp_overlap 2025992, overlap 2025991 TTTTAATAAAAATAA GGGTAGA AATCAA TCTACCC TATAAATTATTTATC CLI_1892 2026607 - 2026020 - | phi13 family phage major tail protein TERM 3027 2026156 - 2026166 + g 74 -5.4 -4.94243 | opp_overlap 2026156 TTAAAATGTAATGGA GCAA ATG TTGC TTTTAATTTTTTTGC TERM 3028 2026694 - 2026676 - R 100 -10.4 -5.9218 | opp_overlap 2026674 2026678 CACATAATAAAAAAA GACTAGTT TTA AACTAGTC CATTGGTAAACTTAC CLI_1893 2027045 - 2026689 - | hypothetical protein CLI_1894 2027415 - 2027056 - | HK97 family phage protein CLI_1895 2027783 - 2027415 - | putative phage head-tail adaptor CLI_1896 2028066 - 2027773 - | phi-105 family phage protein CLI_1897 2029383 - 2028151 - | HK97 family phage major capsid protein TERM 3029 2029451 - 2029433 - R 77 -3.2 -5.7946 | TTTTGAATAAAAAAA GACTAT AAATACA ATAGTC TAAGTCTAGCTTTTG CLI_1898 2030178 - 2029435 - | putative Clp protease CLI_1899 2031403 - 2030171 - | HK97 family phage portal protein CLI_1900 2031647 - 2031465 - | hypothetical protein TERM 3030 2031592 - 2031571 - G 88 -3 -6.04953 | overlap 2031573 ACATAAATAAAAAAA GCTGTAGT TAATAT ACTACATC CTCCCAAAATCAATA CLI_1901 2033428 - 2031671 - | putative phage terminase, large subunit TERM 3031 2033071 - 2033094 + g 76 -2.5 -5.50499 | TCTGTGATTTAGCTT GTTTTCTAG CACATT CTATAAAAC TTTTTTTAAATCTAC CLI_1902 2033914 - 2033429 - | P27 family phage terminase small subunit TERM 3032 2034081 - 2034059 - R 100 -6.4 -6.12458 | CAAAAAAATAAAAAA GCACTAACTT TTT AAATTAGTAC CAAATTCCTTTTCAT CLI_1903 2034529 - 2034062 - | hypothetical protein TERM 3033 2034572 - 2034557 - R 74 -4.7 -5.21709 | opp_overlap 2034557 TTCTATAGTAAAAAA CACTC AATTAA GAGTG TTTAAAATAATTTTA CLI_1904 2036415 - 2034622 - | hypothetical protein TERM 3034 2034801 - 2034817 + g 83 -3.1 -5.76633 | TTGTATATTCCTCTA TAATTTT ATA AAAGTTA TTTTTTTGTCTATCA CLI_1905 2036653 - 2036402 - | hypothetical protein CLI_1906 2037227 - 2036634 - | hypothetical protein TERM 3035 2036746 - 2036762 + g 81 -3.8 -5.626 | TCTCCAAATTTTACT TCAATT AACTC AATTGA TTTTTTTATAAGATA CLI_1907 2037446 - 2037249 - | hypothetical protein CLI_1908 2037721 - 2037476 - | hypothetical protein TERM 3036 2037820 - 2037801 - R 79 -5 -5.61881 | TTGTAAAAATAAAAA GAGCCACA TTGG TATGACTC TTTAAACTATTAATA CLI_1909 2038028 - 2037846 - | hypothetical protein CLI_1910 2038291 - 2038079 - | hypothetical protein CLI_1911 2038687 - 2038376 - | hypothetical protein CLI_1912 2038905 - 2038717 - | hypothetical protein CLI_1913 2039160 - 2038906 - | hypothetical protein TERM 3037 2039221 - 2039194 - R 70 -2.8 -5.5074 | TAATTTAATAAAAAA GCTGTAGA AATTTTTTTAAA TCTACAGC TCAATCATATATTTT CLI_1914 2039789 - 2039235 - | GIY-YIG domain-containing protein TERM 3038 2039900 - 2039879 - R 93 -6.7 -5.85011 | opp_overlap 2039879 CAAAAATCAAAAAAA GATATAGAA TTTT TCCTATATC TCTTTCACTTATATG TERM 3039 2040025 - 2040009 - R 82 -2.3 -6.20267 | TTAAAAATAAAAAAA GACACTA TTA TAATATC CTTTTTTAGTATTTA CLI_1915 2040484 - 2040038 - | hypothetical protein CLI_1916 2041212 - 2040535 - | hypothetical protein CLI_1917 2044537 - 2041514 - | hypothetical protein TERM 3040 2041669 - 2041681 + g 85 -4.9 -5.62045 | CTCTTCCAATCCTAA CATAT TGT ATATG TTTTTTATTATCTAT CLI_1918 2044774 - 2044610 - | hypothetical protein CLI_1919 2046268 - 2045132 - | hypothetical protein CLI_1920 2047255 - 2046314 - | hypothetical protein CLI_1921 2048053 - 2047301 - | hypothetical protein TERM 3041 2047664 - 2047698 + g 71 -7.5 -3.78034 | gap 1 AGTCCTACAATCCAT CTTGTTA-GCTAATTT TTGT AAATTAGCATAATAAG TTGTTGCTATCAATA TERM 3042 2048113 - 2048099 - R 83 -7.8 -4.614 | opp_overlap 2048099 2048094 CCTAATTATACAAAA GGGGAA TAA CTCCCC TAATGTTCTTTATTT CLI_1922 2048553 - 2048134 - | hypothetical protein TERM 3043 2048436 - 2048458 + g 79 -9.3 -3.45788 | opp_overlap 2048435, overlap 2048434 CCTTAGTAGAATCAT TGGAAGTAT CATAT ATACTTCCA TCTTGTCTTATACAA CLI_1923 2048757 - 2048599 - | hypothetical protein TERM 3044 2048892 - 2048867 - R 91 -8.5 -5.05601 | opp_overlap 2048866 2048867, overlap 2048868 CAGTAGACATAAAAA CTTAGCTTAAT ATGC ATTAAGCTAAA CTTTTCAGACATTAT TERM 3045 2048891 - 2048868 - R 89 -9.8 -3.62276 | opp_overlap 2048867 2048866, overlap 2048867 AGTAGACATAAAAAC TTAGCTTAAT ATGC ATTAAGCTAA ACTTTTCAGACATTA TERM 3046 2049225 - 2049205 - R 75 -9.1 -3.29626 | opp_overlap 2049203 2049205 TAATATTTATATCAA GAGTGTTCT TTT AAAACACTC TATTCATTATGTTTT CLI_1924 2049890 - 2049225 - | DNA-binding protein TERM 3047 2049791 - 2049805 + g 77 -7.2 -4.20284 | overlap 2049789 TTTTTCTACTACCTT TAAACC ACT GGTTTA TGTTTTGTTTCTTTA CLI_1925 2050181 - 2050023 - | hypothetical protein CLI_1926 2050503 - 2050174 - | hypothetical protein TERM 3048 2050443 - 2050455 + g 70 -6.3 -4.09015 | opp_overlap 2050442 ATTTTAAAAATTTAG TTAGG TGT CCTAA TTTATCCTCTCTTTT CLI_1927 2050671 - 2050540 - | hypothetical protein CLI_1928 2051083 - 2050754 - | hypothetical protein CLI_1929 2051563 - 2051234 - | hypothetical protein TERM 3049 2051395 - 2051413 + g 70 -5.4 -4.55697 | TATTAAATATTTTAT CAAATGTT TCT AATATTTG TTTCTTTATAAAGCT TERM 3050 2051686 - 2051696 + H 73 -2.6 -5.64304 | TTTATACCAAAATCT TAAA ATA TTTA TTTTTTATTATATTA CLI_1930 2051851 - 2052336 + | hypothetical protein CLI_1931 2052789 - 2052427 - | hypothetical protein CLI_1932 2053495 - 2052815 - | hypothetical protein CLI_1933 2053677 - 2053492 - | hypothetical protein TERM 3051 2053640 - 2053664 + g 73 -8.7 -3.18383 | GAGCTTACATAGCTA TACTGTCTTAT ATA ATACGACAGTA TTAATACATACAAAT TERM 3052 2053891 - 2053923 + r 74 -6.3 -4.65153 | AATATTTAATTGTCT GCACTTGCGAGAG CCACCAA CTCTTTCAGGTGC TTTTACTTTATCTAA CLI_1934 2054442 - 2053942 - | hypothetical protein CLI_1935 2055434 - 2054442 - | phage integrase family site specific recombinase TERM 3053 2055478 - 2055440 - R 100 -9.8 -4.82901 | opp_overlap 2055440 TTTTTCGCATAAAAA TAGACCCCCTTCATTC TACCTAT GAATGAAGAAAGTCTA TTAGTATTTTTTTGA spo0A 2056391 - 2055570 - | sporulation transcription factor Spo0A TERM 3054 2056533 - 2056495 - R 79 -4.9 -5.53079 | gap 1, opp_overlap 2056498 2056502 2056530, overlap 2056498 2056502 AAAATATATAAAAAA TAATAAAGTGTAAGATAC TCTA ATTTCTTACACTTTA-TA TGGTAACACATATAT TERM 3055 2056531 - 2056498 - R 93 -9.1 -4.78477 | opp_overlap 2056498 2056502 2056530, overlap 2056495 2056502 ATATATAAAAAATAA TAAAGTGTAAGATAC TCTA ATTTCTTACACTTTA TATGGTAACACATAT TERM 3056 2056527 - 2056502 - R 73 -5.5 -4.86216 | opp_overlap 2056498 2056502, overlap 2056498 2056495 ATAAAAAATAATAAA GTGTAAGATAC TCTA ATTTCTTACAC TTTATATGGTAACAC TERM 3057 2056825 - 2056809 - R 77 -3.1 -5.72616 | opp_overlap 2056816, overlap 2056816 ATCTATATAAAAAAA TTAACTA TAA TAATTAA TTATTATCTAATATG spoIVB 2058048 - 2056822 - | stage IV sporulation protein B TERM 3058 2058297 - 2058255 - R 100 -9.4 -5.60993 | opp_overlap 2058256, overlap 2058256 TTTTTCATAAAAAAA GGCTCTAAATAGATTGTGTT ATT AATACAATTTATTTAGAGCT TTTTTGAATTTTGAA TERM 3059 2058256 - 2058296 + r 100 -17.3 -5.2696 | opp_overlap 2058256 2058255 TTTTCATAAAAAAAG GCTCTAAATAGATTGTGTT ATT AATACAATTTATTTAGAGC TTTTTTGAATTTTGA TERM 3060 2058296 - 2058256 - R 100 -12.9 -3.95873 | opp_overlap 2058256, overlap 2058255 TTTTCATAAAAAAAG GCTCTAAATAGATTGTGTT ATT AATACAATTTATTTAGAGC TTTTTTGAATTTTGA metA 2059366 - 2058470 - | homoserine O-succinyltransferase TERM 3061 2058832 - 2058855 + g 100 -9.8 -4.36914 | opp_overlap 2058826 2058835, overlap 2058826 CATCAAAACCTTTAG TAAGTAAAGA ATTT TCTTTACTTA TTTTATGAGGAAACA hom-2 2060619 - 2059393 - | homoserine dehydrogenase CLI_1940 2061939 - 2060659 - | O-acetylhomoserine aminocarboxypropyltransferase/cysteine synthase family protein TERM 3062 2061481 - 2061499 + g 74 -9 -3.37685 | overlap 2061484 ACCAATAGTTTCTCC TAATACCA TTT TGGTATTA TCTTTGGCAAGTTTT TERM 3063 2062022 - 2062003 - R 91 -7.2 -5.52384 | opp_overlap 2062003 TTTGTATTAAAAAAA GCCATTTC GTGA GAAATGAC TTTATTAACAGTTAC recN 2063941 - 2062238 - | DNA repair protein recN TERM 3064 2062738 - 2062728 - G 82 -5.4 -5.40072 | overlap 2062729 2062735 CCGCTTTTAAAAAAA CTAG ATA CTAG ATCTACATTAATTTT TERM 3065 2062975 - 2062991 + g 85 -3.7 -5.76949 | overlap 2062976 ATTCTATAATCTCTT TTATGGT TGT ACCATAC TTTTTTTTAAGAGTA TERM 3066 2062976 - 2062990 + g 75 -7.2 -4.05085 | overlap 2062975 TTCTATAATCTCTTT TATGGT TGT ACCATA CTTTTTTTTAAGAGT TERM 3067 2063830 - 2063814 - G 77 -8.1 -3.76568 | opp_overlap 2063823, overlap 2063823 CCACCTAGAACATAA CTTATAG CAT CTATAAG AATAGATTTACCAGC TERM 3068 2063887 - 2063873 - G 74 -7.2 -3.889 | TGTAAGTACATTAAA TCCTTT ATC AAAGGA TATAGACAATTCTTC argR 2064406 - 2063954 - | arginine repressor ppnK 2065253 - 2064408 - | ATP-NAD kinase CLI_1944 2066074 - 2065253 - | hemolysin A dxs 2067964 - 2066096 - | 1-deoxy-D-xylulose-5-phosphate synthase TERM 3069 2067800 - 2067790 - G 70 -4 -4.87807 | opp_overlap 2067792, overlap 2067792 CGAATACATTAAAAA TACT TAA AGTA AGTTCTACCACTCCT TERM 3070 2067866 - 2067886 + g 72 -7.7 -3.55524 | opp_overlap 2067866, overlap 2067862 ATTATCTATTAAAAA TTCTCTTAT CTC GTAAGAGAA TTGGTTTAACTCATT TERM 3071 2067886 - 2067866 - G 80 -7 -4.75372 | opp_overlap 2067862 2067866 ATTATCTATTAAAAA TTCTCTTA TCTCG TAAGAGAA TTGGTTTAACTCATT CLI_1946 2068522 - 2067965 - | hypothetical protein TERM 3072 2068676 - 2068657 - R 77 -8 -4.17048 | opp_overlap 2068654 TTTCCCGTAAAACAA TCAAAATG TCGC CATTTTGA CGGTTTCCCTTTAAT ispA 2070197 - 2069325 - | geranyltranstransferase xseB 2070537 - 2070322 - | exodeoxyribonuclease VII, small subunit xseA 2071836 - 2070631 - | exodeoxyribonuclease VII large subunit TERM 3073 2070978 - 2070994 + g 74 -2.4 -5.53436 | overlap 2070990 TTCTTTTTTCTTTTA TTATAT TTTCC ATATAA TTTTTTATATTATAT TERM 3074 2071892 - 2071860 - R 93 -11.5 -3.13403 | opp_overlap 2071866, overlap 2071866 TCCTTTTTATTAATA TTAAAAGTGAAAAGC TAA GCTCTTCACTTTTTA AATATTTATTAATTT TERM 3075 2071866 - 2071886 + r 88 -8.3 -4.7889 | opp_overlap 2071866 2071860 TTATTAATATTAAAA GTGAAAAGC TAA GCTCTTCAC TTTTTAAATATTTAT TERM 3076 2071886 - 2071866 - R 100 -10.5 -4.44797 | opp_overlap 2071866, overlap 2071860 TTATTAATATTAAAA GTGAAAAGC TAA GCTCTTCAC TTTTTAAATATTTAT nusB 2072338 - 2071907 - | N utilization substance protein B TERM 3077 2072196 - 2072206 + g 82 -4 -5.56263 | TCTTTTAAATCTACA GATT CAT AATC TTTTTCTTTTGTAAT TERM 3078 2072466 - 2072446 - R 100 -11.2 -4.12532 | opp_overlap 2072445 2072444 TTCTCTACATAGAAA CACCCTCT ACCTG AGAGGGTG CAATTATTTATTATT asp 2072872 - 2072477 - | alkaline shock protein CLI_1952 2073478 - 2072954 - | stage III sporulation protein AH CLI_1953 2074136 - 2073540 - | stage III sporulation protein AG TERM 3079 2074225 - 2074246 + r 78 -7.5 -4.29176 | opp_overlap 2074217 2074230, overlap 2074230 2074243 TATAATATACTTTTT TAAAATACA TATT TGTATTTTA TTTTAAATTCAATAT spoIIIAF 2074865 - 2074275 - | stage III sporulation protein AF CLI_1955 2076064 - 2074901 - | stage III sporulation protein AE CLI_1956 2076456 - 2076073 - | stage III sporulation protein AD CLI_1957 2076680 - 2076483 - | stage III sporulation protein AC CLI_1958 2077240 - 2076722 - | stage III sporulation protein SpoAB CLI_1959 2078200 - 2077277 - | stage III sporulation protein AA TERM 3080 2078349 - 2078402 + r 73 -2.8 -5.77571 | gap 2, opp_overlap 2078344 2078360, overlap 2078360 TACCATATAATTTTT TGTATA--AAAAACACCCTATAAGAT TAAA ATCTTATAGGGTGTTTTAACTAATCA TTTTTATTTTTTAAT TERM 3081 2078389 - 2078360 - R 100 -16.7 -5.24129 | opp_overlap 2078349 2078360 TTTTTGTATAAAAAA CACCCTATAAGAT TAAA ATCTTATAGGGTG TTTTAACTAATCATT TERM 3082 2078360 - 2078389 + r 100 -16.7 -4.2231 | opp_overlap 2078360, overlap 2078349 TTTTTGTATAAAAAA CACCCTATAAGAT TAAA ATCTTATAGGGTG TTTTAACTAATCATT CLI_1960 2078815 - 2078396 - | hypothetical protein efp 2079413 - 2078856 - | elongation factor P aroQ 2079944 - 2079486 - | 3-dehydroquinate dehydratase TERM 3083 2079592 - 2079605 + g 80 -2.4 -5.80248 | ACACCTAAGGAAGCT TCTG CAGTAA CAGA TTTTTTTCTATATTC TERM 3084 2079827 - 2079841 + g 78 -4.4 -5.4387 | TTAAATCTTCATTCT TAAAAT GTA ATTTTA TTTTTTGATTTATAT TERM 3085 2080028 - 2080061 + r 100 -9.2 -5.15634 | opp_overlap 2080060, overlap 2080027 ATCAAAACTTCACTT TATTTGCAAATAAT ATTATG GTTATTTGCAAATA TTTTTTCATAAAATA aroK 2080611 - 2080099 - | shikimate kinase CLI_1964 2081239 - 2080745 - | hypothetical protein CLI_1965 2081691 - 2081245 - | hypothetical protein TERM 3086 2081599 - 2081587 - G 70 -3.5 -5.14563 | opp_overlap 2081587 TGCTTTATTAAAAAA TATAA TAT TTATA GTTAATAGGATAATT CLI_1966 2082396 - 2081707 - | hypothetical protein TERM 3087 2082054 - 2082064 + g 71 -2.4 -5.36314 | overlap 2082053 ATATATTTTTGCACT GCGC CAT GCAC TTTTTTAATATTTTA CLI_1967 2082870 - 2082424 - | putative lipoprotein CLI_1968 2083289 - 2082849 - | hypothetical protein TERM 3088 2083270 - 2083256 - G 70 -5.8 -4.28762 | opp_overlap 2083265 2083267, overlap 2083267 ATAATCCTATTAAAA TTTCTA TTA TAGAAA AACCTTTTCTCTTTG CLI_1969 2083732 - 2083286 - | hypothetical protein CLI_1970 2084165 - 2083713 - | hypothetical protein TERM 3089 2084284 - 2084315 + r 95 -11.6 -3.62522 | opp_overlap 2084277, overlap 2084285 TAAACAGAGTTCTTG GCTTCAGAGGGAGT TTTT ACTCCCACTAAAGC TTATTAACAGACTTC TERM 3090 2084320 - 2084359 + r 100 -14.6 -2.90615 | gap 1, opp_overlap 2084277 2084323 2084325, overlap 2084324 2084325 2084327 2084327 CCCACTAAAGCTTAT TAACAGACTTCTTAGGAGT TTT ACTCCTTAGAAGTC-GTTA TCCTTTAGGGGAAAT TERM 3091 2084356 - 2084323 - R 93 -11.9 -3.20747 | gap 1, opp_overlap 2084320 2084324 2084325 2084327 2084327, overlap 2084325 ACTAAAGCTTATTAA CAGACTTCTTAGGAGT TTT ACTCCTTAGAAGTC-G TTATCCTTTAGGGGA TERM 3092 2084324 - 2084356 + r 95 -12.1 -3.60151 | opp_overlap 2084323 2084325, overlap 2084320 2084325 2084327 2084327 CTAAAGCTTATTAAC AGACTTCTTAGGAGT TTT ACTCCTTAGAAGTCG TTATCCTTTAGGGGA TERM 3093 2084355 - 2084325 - R 100 -15.6 -3.16288 | opp_overlap 2084324 2084320 2084325 2084327 2084327, overlap 2084323 TAAAGCTTATTAACA GACTTCTTAGGAGT TTT ACTCCTTAGAAGTC GTTATCCTTTAGGGG TERM 3094 2084325 - 2084355 + r 100 -15.6 -2.75769 | opp_overlap 2084325 2084323, overlap 2084324 2084320 2084327 2084327 TAAAGCTTATTAACA GACTTCTTAGGAGT TTT ACTCCTTAGAAGTC GTTATCCTTTAGGGG TERM 3095 2084327 - 2084353 + r 89 -12.4 -2.92144 | opp_overlap 2084325 2084323, overlap 2084325 2084324 2084320 2084327 AAGCTTATTAACAGA CTTCTTAGGAGT TTT ACTCCTTAGAAG TCGTTATCCTTTAGG CLI_1971 2084960 - 2084556 - | putative pilin CLI_1972 2086336 - 2085146 - | type II secretion system protein F CLI_1973 2088010 - 2086481 - | general secretion pathway protein E CLI_1974 2088287 - 2088159 - | hypothetical protein CLI_1975 2089456 - 2088383 - | putative lipoprotein dapF 2090278 - 2089457 - | diaminopimelate epimerase TERM 3096 2092102 - 2092086 - g 80 -8.7 -3.83864 | opp_overlap 2092085 2092086 AAAACTTTAGAAGAA GCTGCCA CCT TAGCAGC CTTTTATAGTAAATC CLI_1977 2090532 - 2092262 + | fibronectin-binding protein truA-1 2092331 - 2093071 + | tRNA pseudouridine synthase A TERM 3097 2093119 - 2093163 + T 78 -9.5 -3.08133 | gap 2, opp_overlap 2093130 2093157 TTATCTAATGACTCT CCGCTCTAATACTCCCATCTT CTTCA AAG-TGGGAGTAA-GGAGCGG TTACGTCCCTGGATA TERM 3098 2093237 - 2093198 - T 100 -14.6 -2.90496 | gap 1, opp_overlap 2093201 2093202, overlap 2093201 2093202 2093204 2093220 TTTTCCCCTAAAGGA TAAC-GACTTCTAAGGAGT AAA ACTCCTAAGAAGTCTGTTA ATAAGCTTTAGTGAG TERM 3099 2093233 - 2093201 - T 95 -12.1 -3.60151 | opp_overlap 2093201 2093202, overlap 2093198 2093202 2093204 2093220 TCCCCTAAAGGATAA CGACTTCTAAGGAGT AAA ACTCCTAAGAAGTCT GTTAATAAGCTTTAG TERM 3100 2093201 - 2093234 + T 93 -11.9 -3.20747 | gap 1, opp_overlap 2093201 2093198 2093202 2093204 2093220, overlap 2093202 TCCCCTAAAGGATAA C-GACTTCTAAGGAGT AAA ACTCCTAAGAAGTCTG TTAATAAGCTTTAGT TERM 3101 2093202 - 2093232 + T 100 -15.6 -3.16288 | opp_overlap 2093202 2093201 2093198 2093204 2093220, overlap 2093201 CCCCTAAAGGATAAC GACTTCTAAGGAGT AAA ACTCCTAAGAAGTC TGTTAATAAGCTTTA TERM 3102 2093232 - 2093202 - T 100 -15.6 -2.75769 | opp_overlap 2093201 2093202, overlap 2093201 2093198 2093204 2093220 CCCCTAAAGGATAAC GACTTCTAAGGAGT AAA ACTCCTAAGAAGTC TGTTAATAAGCTTTA TERM 3103 2093230 - 2093204 - T 89 -12.4 -2.92144 | opp_overlap 2093202 2093201, overlap 2093202 2093201 2093198 2093220 CCTAAAGGATAACGA CTTCTAAGGAGT AAA ACTCCTAAGAAG TCTGTTAATAAGCTT TERM 3104 2093294 - 2093348 + T 91 -8.3 -5.01858 | opp_overlap 2093296 2093303, overlap 2093296 2093303 ACTCTGTTTATATTT AATAGAAAATACATGTAATAAATGC ATAAA GTGATTATTACATGTATTTTTTATA TTATTTTTTTATTTC TERM 3105 2093296 - 2093346 + T 100 -10.9 -4.06218 | opp_overlap 2093296 2093303, overlap 2093294 2093303 TCTGTTTATATTTAA TAGAAAATACATGTAATAAATGC ATAAA GTGATTATTACATGTATTTTTTA TATTATTTTTTTATT TERM 3106 2093303 - 2093339 + T 88 -6.8 -5.57729 | opp_overlap 2093303 2093296, overlap 2093296 2093294 ATATTTAATAGAAAA TACATGTAATAAATGC ATAAA GTGATTATTACATGTA TTTTTTATATTATTT CLI_1979 2093576 - 2093349 - | hypothetical protein CLI_1980 2093989 - 2093612 - | HIT family protein TERM 3107 2095235 - 2095249 + G 73 -5.6 -4.58685 | TATATTCATGTAGAT GCTGCC TCT GGTGGC TTTTTCACCCCATTT TERM 3108 2095423 - 2095441 + G 74 -8.8 -3.2348 | opp_overlap 2095420 2095435 TGAAGTAAGTTATTT GGGTGGCA AAA TGCCAACC TTAGCTATTAATTTT CLI_1981 2094500 - 2095903 + | glutamate decarboxylase TERM 3109 2096052 - 2096085 + T 84 -9.5 -3.72037 | opp_overlap 2096069 AAAGGGAGTGACAGG CCGGTGGAGAAAACA ATGA TGAAGTCTCCACCGG TTATATAATTTTTAA CLI_1982 2096685 - 2096344 - | hypothetical protein TERM 3110 2097051 - 2097022 - R 77 -8.9 -3.31792 | opp_overlap 2097030, overlap 2097034 CTATGAGCCTTATAA TGTAAAACTTAAT TATG ATTAAATTTTACA TCAATCATAATTTTA TERM 3111 2097187 - 2097209 + r 75 -5.8 -5.08015 | CTAATACTAAATTAC TTTTTAAATT TTA AATTTAGAAA TTTCTTTTTTCAATT CLI_1983 2098899 - 2097190 - | methyl-accepting chemotaxis protein TERM 3112 2097670 - 2097688 + g 80 -8.9 -3.72576 | overlap 2097662 TGCCTCTCCTGCCCT TGCAGCT TCAAT AGCTGCA TTTAATGCAAGAAGG TERM 3113 2097966 - 2097980 + g 70 -5.6 -4.254 | overlap 2097971 2097976 TTGCTGACATCTCTT CTGCTG AAG CTGCAG TTTCTTGCATATTAG TERM 3114 2099342 - 2099287 - R 100 -18.9 -4.01454 | opp_overlap 2099293, overlap 2099279 2099293 TGAAAAATAATATAA TTAAAATACTGCCTAAAAATAGAAA GCATAA CTTCTATTTTTAGGCAGTATTTTTA ATAATAAATTAAGCT TERM 3115 2099336 - 2099293 - R 100 -17.9 -4.57218 | opp_overlap 2099293, overlap 2099287 ATAATATAATTAAAA TACTGCCTAAAAATAGAAA GCATAA CTTCTATTTTTAGGCAGTA TTTTTAATAATAAAT TERM 3116 2099293 - 2099336 + r 100 -17.2 -4.77438 | opp_overlap 2099293 2099287 ATAATATAATTAAAA TACTGCCTAAAAATAGAA AGCATAAC TTCTATTTTTAGGCAGTA TTTTTAATAATAAAT cloSI 2100943 - 2099369 - | clostripain TERM 3117 2099896 - 2099922 + g 75 -6 -4.76312 | TATTTTCATTGCTTA GATTAATAGCTA AAT TATCTATTGATC TTTTTACATCTTCTA CLI_1985 2101423 - 2102079 + | hypothetical protein CLI_1986 2102081 - 2102782 + | DNA-binding response regulator TERM 3118 2103650 - 2103632 - g 78 -3.2 -5.5074 | opp_overlap 2103632, overlap 2103643 TAAGGGAATAAAAAA TAGTTTTA TAA TTAAACTA TTTAAGTCTATAAAT CLI_1987 2102772 - 2104685 + | sensor histidine kinase TERM 3119 2104875 - 2104826 - T 80 -8.2 -4.35663 | opp_overlap 2104832, overlap 2104830 2104832 2104835 AATAATATGAATAAA TGAAGATAACTAGATATAAGCA TAAAAG TGCTTTTATCTAGTTATTTTTA AATAGGATAATTAAC TERM 3120 2104871 - 2104830 - T 79 -9 -3.71527 | opp_overlap 2104832, overlap 2104826 2104832 2104835 ATATGAATAAATGAA GATAACTAGATATAAGCA TAAAAG TGCTTTTATCTAGTTATT TTTAAATAGGATAAT TERM 3121 2104869 - 2104832 - T 95 -11.6 -3.42564 | opp_overlap 2104832, overlap 2104830 2104826 2104835 ATGAATAAATGAAGA TAACTAGATATAAGCA TAAAAG TGCTTTTATCTAGTTA TTTTTAAATAGGATA TERM 3122 2104832 - 2104869 + T 100 -12.3 -4.66609 | opp_overlap 2104830 2104826 2104832 2104835 ATGAATAAATGAAGA TAACTAGATATAAGCAT AAAA GTGCTTTTATCTAGTTA TTTTTAAATAGGATA TERM 3123 2104866 - 2104835 - T 79 -8.9 -3.82605 | opp_overlap 2104832, overlap 2104832 2104830 2104826 AATAAATGAAGATAA CTAGATATAAGCA TAAAAG TGCTTTTATCTAG TTATTTTTAAATAGG msrA 2105524 - 2105051 - | methionine sulfoxide reductase A CLI_1989 2105904 - 2106695 + | response regulator TERM 3124 2106769 - 2106722 - T 93 -9.7 -4.65916 | gap 1, opp_overlap 2106722 2106725 TTGATGCCAATAAAA TACTTAAAAGCTGTAAATAATT ATAGA AATT-TTTACAGCCTTTAAATA TTTTCTAATATAATT CLI_1990 2108315 - 2106855 - | sensor histidine kinase TERM 3125 2107967 - 2107979 + g 72 -4.9 -4.86954 | TATCTGTTTTATTTA TTGAT TCT ATCAA TTGTTTTTTATTCTT CLI_1991 2109001 - 2108312 - | DNA-binding response regulator CLI_1992 2110060 - 2109284 - | hypothetical protein CLI_1993 2111073 - 2110222 - | ABC transporter, permease protein CLI_1994 2111816 - 2111073 - | ABC transporter, ATP-binding protein TERM 3126 2111863 - 2111904 + Gr 95 -12.1 -3.60782 | opp_overlap 2111872 2111875 2111883, overlap 2111865 2111872 TTTATATTAAAGGGC AATTTTAAAGATTTTATAA AGAT TTATAAAATCTTTAAAATA TTATATAATATATTT TERM 3127 2111865 - 2111902 + Gr 100 -14.7 -3.36762 | opp_overlap 2111872 2111875 2111883, overlap 2111863 2111872 TATATTAAAGGGCAA TTTTAAAGATTTTATAA AGAT TTATAAAATCTTTAAAA TATTATATAATATAT TERM 3128 2111872 - 2111895 + Gr 76 -8.4 -3.68662 | opp_overlap 2111872 2111875 2111883, overlap 2111865 2111863 AAGGGCAATTTTAAA GATTTTATAA AGAT TTATAAAATC TTTAAAATATTATAT TERM 3129 2111895 - 2111872 - gR 76 -8.4 -3.66921 | opp_overlap 2111872 2111865 2111863, overlap 2111875 2111883 AAGGGCAATTTTAAA GATTTTATAA AGAT TTATAAAATC TTTAAAATATTATAT CLI_1995 2111776 - 2111931 + | hypothetical protein TERM 3130 2111984 - 2112010 + Tr 100 -9.8 -4.72486 | opp_overlap 2111984 2111993 ATAAGTATTTAAAAA TTATAATTATAA AAG TTATAATTATAA TTTTTAGGCTTTATG TERM 3131 2112010 - 2111984 - TR 100 -9.8 -4.71382 | opp_overlap 2111984, overlap 2111993 ATAAGTATTTAAAAA TTATAATTATAA AAG TTATAATTATAA TTTTTAGGCTTTATG TERM 3132 2112150 - 2112115 - TR 100 -12.2 -6.23317 | opp_overlap 2112115 AGAAAAATAAAAAAA TACAGGTAATAAAC TAGTTAAT GTTTATTACCTGTA TTTTTTATTTTAATA TERM 3133 2112115 - 2112150 + Tr 100 -12.2 -5.83211 | opp_overlap 2112115 AGAAAAATAAAAAAA TACAGGTAATAAAC TAGTTAAT GTTTATTACCTGTA TTTTTTATTTTAATA CLI_1996 2114125 - 2112263 - | ABC transporter, ATP-binding/permease protein CLI_1997 2116422 - 2114122 - | putative ABC transporter, ATP-binding/permease protein TERM 3134 2116135 - 2116159 + g 84 -6.6 -5.24796 | opp_overlap 2116135 2116136, overlap 2116136 ATAATCCTTTAAATA TCTTTCTAAA TCATC TTTAGAAAGG TTTTTCTTATCTAAG TERM 3135 2116136 - 2116158 + g 74 -7.9 -3.73793 | opp_overlap 2116135 2116136, overlap 2116135 TAATCCTTTAAATAT CTTTCTAAA TCATC TTTAGAAAG GTTTTTCTTATCTAA TERM 3136 2116391 - 2116377 - G 71 -5.8 -4.43681 | opp_overlap 2116376 GACCTAACACTAAAA TTATTG AAG CAATAA ATGGTTTTAAGTGCT TERM 3137 2116582 - 2116526 - H 72 -5 -5.00616 | opp_overlap 2116531, overlap 2116527 2116531 TTCCCCCTTAAAAAA TTAAATTTATAATGATTGTATT TCCTGTTTTTAAC AATACAATCATTATAAATTCAT AACTATTATATTTTA TERM 3138 2116581 - 2116527 - H 75 -8.5 -3.60048 | opp_overlap 2116531, overlap 2116526 2116531 TCCCCCTTAAAAAAT TAAATTTATAATGATTGTATT TCCTGTTTTTAAC AATACAATCATTATAAATTCA TAACTATTATATTTT TERM 3139 2116577 - 2116531 - H 77 -7.1 -4.42765 | opp_overlap 2116531, overlap 2116527 2116526 CCTTAAAAAATTAAA TTTATAATGATTGTATT TCCTGTTTTTAAC AATACAATCATTATAAA TTCATAACTATTATA TERM 3140 2116706 - 2116735 + H 82 -8.2 -4.4296 | opp_overlap 2116708 2116711, overlap 2116732 CTTTACCTATGTCAA TATAATAGTTAT ACTTTC ATAACTATTATA TTTTAATATATATTA CLI_1998 2116836 - 2117279 + | MarR family transcriptional regulator bltD 2117392 - 2117832 + | spermine/spermidine acetyltransferase TERM 3141 2117952 - 2117904 - T 73 -7 -4.07885 | opp_overlap 2117907 2117910, overlap 2117889 2117909 TATTGTTTTTTAAAA CTATATCCCCTTAATTTATTAT ATATA ATAATAAATTAAGGGGTAATTA TTTATAGAATAATTT TERM 3142 2117907 - 2117949 + T 100 -10.9 -4.07877 | opp_overlap 2117889 2117904 2117909, overlap 2117910 TGTTTTTTAAAACTA TATCCCCTTAATTTATTAT ATATA ATAATAAATTAAGGGGTAA TTATTTATAGAATAA TERM 3143 2117947 - 2117909 - T 95 -13.5 -3.09823 | opp_overlap 2117907 2117910, overlap 2117904 TTTTTTAAAACTATA TCCCCTTAATTTATTAT ATATA ATAATAAATTAAGGGGT AATTATTTATAGAAT TERM 3144 2117910 - 2117946 + T 100 -17 -3.07135 | opp_overlap 2117909 2117904, overlap 2117907 TTTTTAAAACTATAT CCCCTTAATTTATTAT ATATA ATAATAAATTAAGGGG TAATTATTTATAGAA moeB 2118744 - 2118061 - | molybdopterin biosynthesis protein MoeB TERM 3145 2118696 - 2118716 + g 71 -3.3 -5.26155 | overlap 2118698 AGTCTTTAAGTTTTT CATTTTCTT CTA AAGAAAGAG TTTTTATATTTCTAT moaD 2118973 - 2118746 - | molybdopterin converting factor subunit 1 aor 2121073 - 2119256 - | aldehyde ferredoxin oxidoreductase, tungsten-containing TERM 3146 2120207 - 2120219 + g 72 -2.7 -5.4505 | ACAGGCTATTGGACA TCTAT AAC ATGGA TTTTTTCTTACAAGA CLI_2003 2121298 - 2121167 - | hypothetical protein aorR 2123362 - 2121467 - | aor transcriptional regulator TERM 3147 2121777 - 2121788 + g 70 -4.4 -4.96996 | opp_overlap 2121777 TCCATATATACAGAA GGTA TTTC TACC TTTCTTTTATTTAAA CLI_2005 2123852 - 2123412 - | MOSC domain-containing protein moaC 2124333 - 2123854 - | molybdenum cofactor biosynthesis protein C moaA 2125296 - 2124337 - | molybdenum cofactor biosynthesis protein A CLI_2008 2127259 - 2125355 - | molybdopterin biosynthesis protein MoeA TERM 3148 2126196 - 2126206 + g 74 -5.4 -4.95806 | CCCCTATTTAAAGGT GTAG CTA CTAC TTTTTCTCCTACTTT TERM 3149 2126666 - 2126636 - G 89 -12 -2.79915 | opp_overlap 2126644, overlap 2126644 AGCGATGCCACCATA CTCAAAAACCTGTG CTG CAAAGGTTCTTGAG TTAAAATCTATTATA moeA 2128497 - 2127271 - | molybdopterin biosynthesis enzyme MoeA TERM 3150 2128429 - 2128441 + g 85 -3.5 -5.71712 | TTCTTCCTTTATCGG TTTTA CAT TAAAA TTTTTTTCTATAAGA mog 2129009 - 2128521 - | molybdopterin biosynthesis enzyme Mog tupC 2129903 - 2129211 - | tungstate ABC transporter, ATP-binding protein tupB 2130571 - 2129900 - | tungstate ABC transporter, permease protein TERM 3151 2130467 - 2130446 - G 85 -10.9 -3.10761 | opp_overlap 2130444, overlap 2130444 2130442 2130441 GTTTAATAAAGCACA GGGAATGCC TAAA AGCATTCCC AATATTGAAGCGATT CLI_2013 2131431 - 2130580 - | tungstate ABC transporter, tungstate-binding protein TERM 3152 2131546 - 2131507 - R 100 -11.2 -5.75599 | opp_overlap 2131505 2131514 TAAATTATAAAAAAA TACAAAATATTATATACT CTAC ATTATATAATATTTTGTA CCATTATAACACATT TERM 3153 2131603 - 2131619 + r 74 -5.1 -5.26119 | overlap 2131604 TAAATTTATAATTTT CGTTCCA TTT TGGAACA TTTTATTTTTAAGCC TERM 3154 2131604 - 2131618 + r 76 -8.6 -3.74587 | overlap 2131603 AAATTTATAATTTTC GTTCCA TTT TGGAAC ATTTTATTTTTAAGC CLI_2014 2132973 - 2131651 - | MATE efflux family protein TERM 3155 2132744 - 2132731 - G 74 -5.3 -5.00616 | TTTCCCGCCAAAAAA TTGTG AAAA CACAA TAGAAGTACCCATGC CLI_2015 2133170 - 2132973 - | hypothetical protein TERM 3156 2133229 - 2133251 + r 79 -3.6 -5.6473 | opp_overlap 2133232 2133234 ATAACTTCTACTTCA TAACATAAAA AAG TTTTATATTA TTTTTTTAATATTAT CLI_2016 2134056 - 2133412 - | hypothetical protein CLI_2017 2135049 - 2134378 - | ABC transporter, ATP-binding protein TERM 3157 2134814 - 2134826 + g 78 -6.3 -4.76075 | TATTGGTTTCTATAG TTGGT TAA ACCAA TTTTCTTAATATCCT CLI_2018 2136536 - 2135064 - | ABC transporter, permease protein CLI_2019 2136874 - 2137032 + | hypothetical protein TERM 3158 2137096 - 2137122 + T 75 -6.8 -4.46073 | ATAATACATATATCT CTTATAATAAAA TTC TTTCATTATAAG TTTATTCTATTGAGA TERM 3159 2137204 - 2137257 + T 100 -9.9 -4.68601 | opp_overlap 2137207 2137208, overlap 2137207 2137208 TCATTTATCATAAAT AAATCACCCCTTTATAGTTAATT TATTTTGT GATTAACTATAAAGGGGCGGTTC TTTATTGTTTTAAAT TERM 3160 2137207 - 2137254 + T 100 -11.6 -4.42118 | opp_overlap 2137207 2137208, overlap 2137204 2137208 TTTATCATAAATAAA TCACCCCTTTATAGTTAATT TATTTTGT GATTAACTATAAAGGGGCGG TTCTTTATTGTTTTA TERM 3161 2137254 - 2137207 - T 100 -10.9 -4.59342 | opp_overlap 2137204 2137207 2137208, overlap 2137208 TTTATCATAAATAAA TCACCCCTTTATAGTTAAT TTATTTTGTG ATTAACTATAAAGGGGCGG TTCTTTATTGTTTTA TERM 3162 2137208 - 2137253 + T 95 -12.9 -3.22831 | opp_overlap 2137207 2137208, overlap 2137207 2137204 TTATCATAAATAAAT CACCCCTTTATAGTTAATT TATTTTGT GATTAACTATAAAGGGGCG GTTCTTTATTGTTTT TERM 3163 2137253 - 2137208 - T 100 -14.4 -3.34882 | opp_overlap 2137208 2137207 2137204, overlap 2137207 TTATCATAAATAAAT CACCCCTTTATAGTTAAT TTATTTTGTG ATTAACTATAAAGGGGCG GTTCTTTATTGTTTT CLI_2020 2139094 - 2137337 - | putative ABC transporter, ATP-binding/permease protein TERM 3164 2138162 - 2138140 - G 71 -4.9 -4.8143 | gap 1 TTAAGAATTCAAAAA CTCTGTGCAC GGCA GC-CACAGAG GACTGTATTGCTGAG CLI_2021 2140821 - 2139091 - | ABC transporter, ATP-binding/permease protein TERM 3165 2140468 - 2140503 + g 74 -6.2 -4.46675 | opp_overlap 2140467, overlap 2140464 2140469 AAGAATAAAAGCATC ATTGGTGGTTCTAGTA ATCA TACTAGATACACCAAA TTTATTATATTCCCT TERM 3166 2140469 - 2140502 + g 80 -9.7 -3.26921 | opp_overlap 2140467, overlap 2140464 2140468 AGAATAAAAGCATCA TTGGTGGTTCTAGTA ATCA TACTAGATACACCAA ATTTATTATATTCCC TERM 3167 2140780 - 2140792 + g 75 -4.9 -5.11613 | opp_overlap 2140780 AATGTTGAAAAATAG GTATA GCT TATAC TTTTTTAAATACTGT TERM 3168 2140915 - 2140897 - H 81 -9 -4.01184 | ATATATTATGATAAA CTATAATG TTA CATTATAG TCAAGAGGAGATTTT TERM 3169 2141657 - 2141673 + G 70 -8.1 -3.07856 | overlap 2141651 2141659 ATTGTTTTGGGGTAT TACTCTT TTG AAGAGTA TCTAATTTCTGATAT CLI_2022 2140937 - 2141758 + | ABC transporter CLI_2023 2142177 - 2142803 + | NADPH-dependent FMN reductase TERM 3170 2142806 - 2142840 + F 100 -16 -3.58269 | opp_overlap 2142812, overlap 2142809 2142812 TTTTATACGTTAATC TGAGAAGAGTCAACAA GAA TTGTTGGCTCTTCTTA TTTAGAAATCCCTTC TERM 3171 2142809 - 2142837 + F 100 -15.5 -3.92542 | opp_overlap 2142812, overlap 2142806 2142812 TATACGTTAATCTGA GAAGAGTCAACAA GAA TTGTTGGCTCTTC TTATTTAGAAATCCC TERM 3172 2142812 - 2142834 + F 100 -11.4 -4.08958 | opp_overlap 2142812, overlap 2142809 2142806 ACGTTAATCTGAGAA GAGTCAACAA GAA TTGTTGGCTC TTCTTATTTAGAAAT TERM 3173 2142834 - 2142812 - f 82 -9.2 -3.36671 | opp_overlap 2142812 2142809 2142806 ACGTTAATCTGAGAA GAGTCAACAA GAA TTGTTGGCTC TTCTTATTTAGAAAT TERM 3174 2143894 - 2143874 - f 76 -8.5 -3.78235 | opp_overlap 2143874 TTATAACTAATATAA CTTTATATA ATT TATATAAAG TTTCGAGAAATAATT TERM 3175 2143874 - 2143894 + F 75 -8.5 -3.54919 | opp_overlap 2143874 TTATAACTAATATAA CTTTATATA ATT TATATAAAG TTTCGAGAAATAATT CLI_2024 2143980 - 2144975 + | putative internalin TERM 3176 2145021 - 2145033 + G 74 -6.3 -4.43879 | opp_overlap 2145021 AATCTTTTACCCAAA TTGGT TTT ACCAA TTTTAGTTGCATCAT CLI_2025 2144997 - 2147084 + | carbohydrate binding protein TERM 3177 2147195 - 2147226 + T 74 -6 -4.66625 | gap 1 TAAGACATATAAAAG GCAGTGCTGAGTATA TTA TA-ATTTGGCACTGC TTTCTTTCTATATGT CLI_2026 2149448 - 2147406 - | sigma-54 dependent transcriptional regulator TERM 3178 2149340 - 2149312 - G 73 -5.9 -4.65032 | overlap 2149314 GAAATCACAAATAAA TCTGCCTTTGGCA ACG TTCCCACGGCAGA CCCGTCACTCACATT TERM 3179 2149795 - 2149766 - R 77 -7.2 -4.50976 | opp_overlap 2149759 2149766, overlap 2149761 CCTTATATGACAAAA GGATGCTGCAAA CGTTTT TATACAGCATCC TTTTTCTTCTCCTCT TERM 3180 2149766 - 2149795 + r 74 -5 -5.2291 | opp_overlap 2149766 2149761, overlap 2149759 CCTTATATGACAAAA GGATGCTGCAAA CGTTTT TATACAGCATCC TTTTTCTTCTCCTCT CLI_2027 2150109 - 2149855 - | hypothetical protein CLI_2028 2150490 - 2150122 - | putative endoribonuclease L-PSP TERM 3181 2150159 - 2150171 + g 71 -7.7 -3.49482 | opp_overlap 2150159 2150157 2150155, overlap 2150157 ATTTCACATAATACA CCCTT CGG AAGGG TCTTTACTGCTATAC TERM 3182 2150451 - 2150471 + g 79 -8.3 -3.99347 | opp_overlap 2150456, overlap 2150456 2150469 CCTGAGAGTATGGTC CAATAGCTC CGG GAGCTTTTG TTGTTTCAATAATTT TERM 3183 2150456 - 2150466 + g 82 -6.8 -5.011 | opp_overlap 2150456, overlap 2150451 GAGTATGGTCCAATA GCTC CGG GAGC TTTTGTTGTTTCAAT CLI_2029 2151803 - 2150532 - | sodium:dicarboxylate symporter family protein TERM 3184 2150744 - 2150734 - G 70 -5.4 -4.53439 | GGAAACCCAAAGAAA CTGA CAA TCAG CATTTCTCCTACCAG TERM 3185 2151036 - 2151024 - G 71 -7.7 -3.53012 | opp_overlap 2151032 GCTTTGTGTGGCAAA TGCAG TAA CTGCA GGATCCAAAATATTT CLI_2030 2153018 - 2151849 - | aminotransferase, classes I and II CLI_2031 2153332 - 2154624 + | hypothetical protein TERM 3186 2154627 - 2154679 + F 100 -9.4 -5.4756 | gap 1, opp_overlap 2154626 2154627, overlap 2154628 CCAGAGGAAGTAAAC TGTGCCCTGTAAGATAGACACAG AAAAGAGG CTGTGT-TAACTTACAGGGTACC TTTTTTCTTCCAATT TERM 3187 2154628 - 2154678 + F 100 -12.9 -3.86909 | gap 1, opp_overlap 2154627 2154626, overlap 2154627 CAGAGGAAGTAAACT GTGCCCTGTAAGATAGACACAG AAAAGAGG CTGTGT-TAACTTACAGGGTAC CTTTTTTCTTCCAAT TERM 3188 2155946 - 2155932 - g 76 -5 -5.04597 | opp_overlap 2155932, overlap 2155926 2155920 AGGTATATATAAAAA TCTAGT TGA ACCAGA TTTTTCAATATAAAA CLI_2032 2154964 - 2155959 + | putative internalin CLI_2033 2155980 - 2158199 + | hypothetical protein TERM 3189 2158244 - 2158279 + T 100 -10.7 -5.26316 | opp_overlap 2158245, overlap 2158245 CGTTAAGCATATGTA AGTAGGTAAATTTGT TCTTAC ACAAATTTACCTACA TTTTTTATAGCATAA TERM 3190 2158245 - 2158278 + T 100 -14.2 -3.75067 | opp_overlap 2158245, overlap 2158244 GTTAAGCATATGTAA GTAGGTAAATTTGT TCTTAC ACAAATTTACCTAC ATTTTTTATAGCATA TERM 3191 2158278 - 2158245 - T 100 -14.2 -3.16267 | opp_overlap 2158245 2158244 GTTAAGCATATGTAA GTAGGTAAATTTGT TCTTAC ACAAATTTACCTAC ATTTTTTATAGCATA CLI_2034 2159839 - 2158400 - | sensor histidine kinase TERM 3192 2159006 - 2159028 + g 80 -6.3 -4.90266 | CATTCCTTCTATTTG CCCCTTTAA AATAG TTATAGGGG TTTTTAATTCATGAG CLI_2035 2160494 - 2159829 - | DNA-binding response regulator TERM 3193 2160786 - 2160734 - R 100 -12.4 -4.22678 | opp_overlap 2160734, overlap 2160721 2160737 TATATTTAACATAAA TAAGGAAGAAGTTGTCTCAAAACA CATTT TATTTTAAAACAACCTCTTCCTTG TTTATGTTAGTATTA TERM 3194 2160783 - 2160737 - R 100 -14.1 -4.22375 | opp_overlap 2160734, overlap 2160734 ATTTAACATAAATAA GGAAGAAGTTGTCTCAAAACA CATTT TATTTTAAAACAACCTCTTCC TTGTTTATGTTAGTA CLI_2036 2161623 - 2160808 - | hypothetical protein CLI_2037 2162404 - 2161649 - | putative ABC transporter, permease protein CLI_2038 2163853 - 2162420 - | ABC transporter, ATP-binding protein TERM 3195 2162666 - 2162679 + g 71 -4.5 -4.75967 | ATTTATCATCATGCT GGCTG TACT TAGCC TTCTTTTTTGTCCTT CLI_2039 2164422 - 2163856 - | putative ABC transporter, permease protein TERM 3196 2164223 - 2164233 + g 85 -8.2 -4.46155 | opp_overlap 2164214 2164223 2164221 AGAGATCCGATAACA CCGG CAC CCGG TTTTCTAACTATATA TERM 3197 2164233 - 2164223 - G 72 -8.2 -3.24633 | opp_overlap 2164223, overlap 2164214 2164221 AGAGATCCGATAACA CCGG CAC CCGG TTTTCTAACTATATA CLI_2040 2165650 - 2164583 - | alanine racemase domain-containing protein TERM 3198 2164865 - 2164883 + g 73 -3.8 -5.19998 | overlap 2164866 ATCTAATCCTATATT TCCTTCTG GCA TAGAAGGC TTTTCTTTTAATTCT TERM 3199 2166308 - 2166321 + G 72 -2.5 -5.40014 | opp_overlap 2166308, overlap 2166317 ATATACTTGGAAATA TATTA AATT TAATA TTTTTATTATTCTTT CLI_2041 2166049 - 2167134 + | spore germination protein TERM 3200 2167337 - 2167323 - g 84 -8.6 -4.30441 | TTATAATATGCAAAA CTTCCA ATA TGGAAG CAGCTTTAATATACA TERM 3201 2168471 - 2168481 + G 72 -4 -5.15381 | ACATACCCTATGCTA TTTC TAG GAAA TTTTTTGGGTATGTT CLI_2042 2167217 - 2168719 + | spore germination protein TERM 3202 2168841 - 2168815 - g 83 -6.6 -5.12068 | opp_overlap 2168814 2168815 2168817 TAGATCCAATAAAAA TAGCTAAACAAG ACG CTTGGATAGCTA CCTTTTTAGGAGTGA TERM 3203 2168965 - 2168978 + G 76 -2.5 -5.54403 | opp_overlap 2168965, overlap 2168974 AGATCCCTGGAAACA TATTA AATT TAATA TTTTTATTATTTTTT TERM 3204 2168974 - 2168987 + G 88 -2.5 -6.2845 | opp_overlap 2168965, overlap 2168965 GAAACATATTAAATT TAATA TTTT TATTA TTTTTTTTTCTCGTT CLI_2043 2168709 - 2169797 + | spore germination protein TERM 3205 2170667 - 2170650 - g 70 -3.5 -5.04175 | overlap 2170639 TCAATTATACAAAAA TTTGAAT AATG ATCCAAA GGTATTAAAAAAATT CLI_2044 2169787 - 2170899 + | Ger(x)C family germination protein TERM 3206 2171187 - 2171175 - g 70 -3.5 -5.14965 | ATGTTGAGCAAAAAA TTTTT TGG AAAAA TACTAGGGACTATTT TERM 3207 2171571 - 2171553 - g 73 -9 -3.1478 | overlap 2171551 ATGATCTTATTAATA TATCCTTT TTT AAAGGATA GTAACAAAATTAAAA TERM 3208 2171939 - 2171929 - g 85 -2.6 -5.86332 | CTAATTCAAAAAAAA TTTT AGG AAAA ATAATGCCTATATAT CLI_2045 2170941 - 2172050 + | spore germination protein CLI_2046 2172506 - 2172078 - | hypothetical protein pcaC-2 2172866 - 2173198 + | 4-carboxymuconolactone decarboxylase TERM 3209 2173856 - 2173837 - g 81 -3.7 -5.56112 | opp_overlap 2173837 ACAAAAACTAAAAAA TGAATAT GGTATA ATATTCA ATAATTTATTTACAA CLI_2048 2173211 - 2174191 + | radical SAM domain-containing protein TERM 3210 2174198 - 2174235 + F 100 -16 -5.23644 | opp_overlap 2174198 ACAGCATAGTAAAAA CCAAAATACAGAATTT ATAATA AAATTCTGTATTTTGG TTTTTATATTTGCTT TERM 3211 2174235 - 2174198 - f 100 -16 -4.83269 | opp_overlap 2174198 ACAGCATAGTAAAAA CCAAAATACAGAATTT ATAATA AAATTCTGTATTTTGG TTTTTATATTTGCTT TERM 3212 2174963 - 2174950 - g 72 -2.5 -5.46706 | ACCTGAAAATAAAAA TATTT ACTT AAATA GAGGAACCATATATT CLI_2049 2174372 - 2175127 + | TPR repeat-containing protein TERM 3213 2175359 - 2175310 - T 85 -10.5 -2.98034 | gap 1, opp_overlap 2175311 2175323, overlap 2175323 TAGGAATCTAAAGCA CTAAATGAAAAAATCAAAGCTTAC TAT GCAAGCTTTAA-TTTTTCATTTAT CTTTAATAACTTATT TERM 3214 2175311 - 2175358 + T 83 -9.6 -3.48506 | gap 1, opp_overlap 2175310 2175323, overlap 2175323 AGGAATCTAAAGCAC TAAATGAAAAAATCAAAGCTTAC TAT GCAAGCTTTAATTTT-TCATTTA TCTTTAATAACTTAT TERM 3215 2175347 - 2175323 - T 100 -8.7 -5.40004 | opp_overlap 2175311 2175323, overlap 2175310 CACTAAATGAAAAAA TCAAAGCTTAC TAT GCAAGCTTTAA TTTTTCATTTATCTT TERM 3216 2175323 - 2175347 + T 70 -4.3 -5.08367 | opp_overlap 2175323 2175310, overlap 2175311 CACTAAATGAAAAAA TCAAAGCTTAC TAT GCAAGCTTTAA TTTTTCATTTATCTT CLI_2050 2176763 - 2175333 - | potassium/proton antiporter TERM 3217 2176383 - 2176371 - G 77 -5.5 -4.90471 | opp_overlap 2176371 ACGCAAAATAGAAAA TACGG AAG CCGCA TCTGTAGAAGAAATA TERM 3218 2177375 - 2177395 + r 74 -8.5 -3.43264 | CACCTACTTCATTAT TTTACAAAT GTT ATTTGTAAA TTCTACTGGATCATT hsp90 2179243 - 2177363 - | heat shock protein 90 CLI_2052 2179788 - 2181353 + | MutS domain-containing protein TERM 3219 2181480 - 2181535 + F 80 -6.4 -5.00616 | opp_overlap 2181488, overlap 2181483 2181486 2181488 2181528 ATAATTTATTTATAC TATTATAAGGACTTATTTGGGTTTAT TTCT AAAAGCTCAAATAAGTCCTATTATTA TTTTTTACAAGAAAA TERM 3220 2181483 - 2181532 + F 85 -8.1 -4.61482 | opp_overlap 2181488, overlap 2181480 2181486 2181488 2181528 ATTTATTTATACTAT TATAAGGACTTATTTGGGTTTAT TTCT AAAAGCTCAAATAAGTCCTATTA TTATTTTTTACAAGA TERM 3221 2181486 - 2181529 + F 100 -9.8 -4.40692 | opp_overlap 2181488, overlap 2181483 2181480 2181488 2181528 TATTTATACTATTAT AAGGACTTATTTGGGTTTAT TTCT AAAAGCTCAAATAAGTCCTA TTATTATTTTTTACA TERM 3222 2181527 - 2181488 - f 70 -8 -3.45849 | opp_overlap 2181488 2181486 2181483 2181480 TTTATACTATTATAA GGACTTATTTGGGTTTAT TTCT AAAAGCTCAAATAAGTCC TATTATTATTTTTTA TERM 3223 2181488 - 2181527 + F 95 -12.4 -3.78069 | opp_overlap 2181488, overlap 2181486 2181483 2181480 TTTATACTATTATAA GGACTTATTTGGGTTTAT TTCT AAAAGCTCAAATAAGTCC TATTATTATTTTTTA TERM 3224 2181528 - 2181558 + F 70 -5 -4.89729 | overlap 2181486 2181483 2181480 AGCTCAAATAAGTCC TATTATTATTTTTT ACA AGAAAATGGTAATA TTTTTCCATTTTATA TERM 3225 2182493 - 2182481 - g 76 -6.3 -4.52589 | opp_overlap 2182480 2182481 CTCCTGTAGATAAAA TTCCA GTA TGGAA CTTTGGTTTTGCAAA treP 2181835 - 2183262 + | PTS system, trehalose-specific IIBC component TERM 3226 2183302 - 2183334 + F 72 -8.7 -2.67021 | gap 1, opp_overlap 2183302, overlap 2183301 2183304 ACAAATATATTAAAA TAGAAAAGG-AGGA TTAAAT TCCTTCCTTTTCTA ATTCATATTTAAACA TERM 3227 2183334 - 2183302 - f 86 -8.7 -4.47397 | gap 1, opp_overlap 2183302 2183301 2183304 ACAAATATATTAAAA TAGAAAAGG-AGGA TTAAAT TCCTTCCTTTTCTA ATTCATATTTAAACA treC 2183365 - 2185032 + | alpha,alpha-phosphotrehalase TERM 3228 2185483 - 2185471 - g 91 -4.9 -5.9218 | opp_overlap 2185458, overlap 2185458 TAGATAATAAAAAAA TTATC TTA GATAA AGACTTTTTTAATAA treR 2185065 - 2185775 + | trehalose operon repressor TERM 3229 2185842 - 2185883 + T 100 -19.2 -4.00684 | opp_overlap 2185854 GATAGGTTTATATTT GCGCCTTTAAAATAAAAT TAAATC ATTTTATTTTAAAGGCGC TTCTTCCTTTTATAT CLI_2056 2186576 - 2186136 - | PTS system, fructose family, IIA component CLI_2057 2186896 - 2186777 - | hypothetical protein CLI_2058 2188253 - 2186856 - | PTS system, fructose family, IIBC component CLI_2059 2189177 - 2188254 - | PfkB family kinase CLI_2060 2190057 - 2189197 - | tagatose-bisphosphate aldolase TERM 3230 2190219 - 2190242 + r 100 -11.2 -4.37534 | opp_overlap 2190219 TGAAAATACAAAAAA GAGATTTTCA ATAT TGAAAATCTC TTTTCATATAGATTT TERM 3231 2190242 - 2190219 - R 100 -11.2 -5.63645 | opp_overlap 2190219 TGAAAATACAAAAAA GAGATTTTCA ATAT TGAAAATCTC TTTTCATATAGATTT CLI_2061 2190994 - 2190257 - | putative transcriptional regulator TERM 3232 2190688 - 2190708 + g 81 -5.5 -5.2204 | overlap 2190685 TTTTTAATACATTTT CTACAGAAA TAT TTTCTATAG TTTTTGTTACTTCTA CLI_2062 2191486 - 2191079 - | hypothetical protein CLI_2063 2191848 - 2192243 + | endoribonuclease L-PSP family protein TERM 3233 2192318 - 2192287 - T 100 -11 -3.99324 | opp_overlap 2192287 TTCTATTATGAGAAA TGTCCTCACTGTTC TAAA AAACATTGAGGACA TTTTTTCGTTTTAAA TERM 3234 2192287 - 2192318 + T 100 -10.3 -5.46698 | opp_overlap 2192287 TTCTATTATGAGAAA TGTCCTCACTGTT CTAAAA AACATTGAGGACA TTTTTTCGTTTTAAA CLI_2064 2193417 - 2192548 - | radical SAM domain-containing protein TERM 3235 2194395 - 2194442 + G 74 -8 -3.83026 | gap 1, opp_overlap 2194395 2194412 2194413, overlap 2194396 2194413 ATTCAAATTCAGATA CTTTAGCTGGTGGTAAAGGCACT AAT AGTGCTTTTGC-ATTAGCTAAAC TTTGCTATGAAACCC TERM 3236 2194396 - 2194441 + G 87 -11.5 -2.89602 | gap 1, opp_overlap 2194395 2194412 2194413, overlap 2194395 2194413 TTCAAATTCAGATAC TTTAGCTGGTGGTAAAGGCACT AAT AGTGCTTTTGC-ATTAGCTAAA CTTTGCTATGAAACC TERM 3237 2194413 - 2194425 + G 79 -7.7 -4.28774 | opp_overlap 2194413 2194412, overlap 2194396 2194395 TAGCTGGTGGTAAAG GCACT AAT AGTGC TTTTGCATTAGCTAA CLI_2065 2193830 - 2194921 + | glycerol dehydrogenase CLI_2066 2195282 - 2195169 - | hypothetical protein CLI_2067 2197061 - 2195412 - | methyl-accepting chemotaxis protein TERM 3238 2195465 - 2195510 + g 72 -7.7 -3.67597 | gap 1, opp_overlap 2195489, overlap 2195468 2195489 TATCTGCTAGTTCTG TAAGCTCCT-CGGCAGAAGAGG ATA CTTCTTCTGTAGAAGAAGCTTG TTGTTCCATGGCCGC TERM 3239 2195468 - 2195507 + g 74 -7.2 -3.97307 | gap 1, opp_overlap 2195489, overlap 2195465 2195489 CTGCTAGTTCTGTAA GCTCCT-CGGCAGAAGAGG ATA CTTCTTCTGTAGAAGAAGC TTGTTGTTCCATGGC TERM 3240 2195990 - 2196034 + g 70 -8.1 -3.1789 | opp_overlap 2196002, overlap 2195995 2196000 2196002 TAAGAACACTACCAC TTAATGAAGAAATTCTATCTG TAA CAGATAGAAAGTTTTCTTTAA TGTCTTCTACAGATT TERM 3241 2195995 - 2196029 + g 76 -8 -3.95449 | opp_overlap 2196002, overlap 2195990 2196000 2196002 ACACTACCACTTAAT GAAGAAATTCTATCTG TAA CAGATAGAAAGTTTTC TTTAATGTCTTCTAC TERM 3242 2196000 - 2196024 + g 70 -4.3 -4.98061 | opp_overlap 2196002, overlap 2195995 2195990 2196002 ACCACTTAATGAAGA AATTCTATCTG TAA CAGATAGAAAG TTTTCTTTAATGTCT TERM 3243 2196022 - 2196002 - G 100 -11.3 -4.33621 | opp_overlap 2196002 2196000 2195995 2195990 CACTTAATGAAGAAA TTCTATCTG TAA CAGATAGAA AGTTTTCTTTAATGT TERM 3244 2196002 - 2196022 + g 85 -11.3 -2.73241 | opp_overlap 2196002, overlap 2196000 2195995 2195990 CACTTAATGAAGAAA TTCTATCTG TAA CAGATAGAA AGTTTTCTTTAATGT CLI_2068 2197168 - 2197055 - | hypothetical protein CLI_2069 2198294 - 2197233 - | alanine racemase domain-containing protein TERM 3245 2198643 - 2198611 - R 100 -12.3 -5.4756 | opp_overlap 2198611 AATTCTAATAAAAAA GTTGCCTTAAAAT AGATTTA ATTTTAAGGCAAC TTTTTTATTATTTTT TERM 3246 2198611 - 2198643 + r 100 -12.3 -5.80727 | opp_overlap 2198611 AATTCTAATAAAAAA GTTGCCTTAAAAT AGATTTA ATTTTAAGGCAAC TTTTTTATTATTTTT CLI_2070 2198929 - 2198651 - | hypothetical protein CLI_2071 2199399 - 2200463 + | oxidoreductase family protein TERM 3247 2200670 - 2200615 - T 100 -13.9 -3.53224 | opp_overlap 2200619, overlap 2200617 2200619 TATCCTCTCTTTAAA TACATCTATGTGAATATATATTTTA AAACCA TAAAATATATATTCACATAGATTTT TATATTGTTTTTTTA TERM 3248 2200668 - 2200617 - T 100 -16.5 -3.34398 | opp_overlap 2200619, overlap 2200615 2200619 TCCTCTCTTTAAATA CATCTATGTGAATATATATTTTA AAACCA TAAAATATATATTCACATAGATT TTTATATTGTTTTTT TERM 3249 2200619 - 2200666 + T 100 -19.1 -5.25799 | opp_overlap 2200619 2200617 2200615 CTCTCTTTAAATACA TCTATGTGAATATATATTTTA AAACCA TAAAATATATATTCACATAGA TTTTTATATTGTTTT TERM 3250 2200666 - 2200619 - T 100 -19.1 -3.24232 | opp_overlap 2200619, overlap 2200617 2200615 CTCTCTTTAAATACA TCTATGTGAATATATATTTTA AAACCA TAAAATATATATTCACATAGA TTTTTATATTGTTTT CLI_2072 2201252 - 2200707 - | adenine phosphoribosyltransferase CLI_2073 2202332 - 2201268 - | xanthine/uracil permease family protein TERM 3251 2202641 - 2202651 + r 70 -4 -5.09762 | ATAATCTTTAGCTTA GAAA TTC TTTC TTTTATTTCTTAAAA TERM 3252 2202762 - 2202740 - R 100 -9.4 -5.80951 | opp_overlap 2202740 ATCGAAAATAAAAAA TTTGTATAAT GAT ATTATACAAA TTTTCAAAGTCTTAT TERM 3253 2202740 - 2202762 + r 86 -9.4 -4.14874 | opp_overlap 2202740 ATCGAAAATAAAAAA TTTGTATAAT GAT ATTATACAAA TTTTCAAAGTCTTAT CLI_2074 2203322 - 2202774 - | GGDEF domain-containing protein CLI_2075 2204860 - 2203556 - | hypothetical protein CLI_2076 2206895 - 2205120 - | putative sigma-54 dependent transcriptional regulator TERM 3254 2205777 - 2205808 + g 71 -4.5 -4.77036 | TATGGTTCCCCCATT GGCAAGTTCAAAT TTCCCC ATTTGACCTTCCC TTTTTGCTCCTGAAA TERM 3255 2207038 - 2207050 + H 72 -4.9 -4.91852 | opp_overlap 2207038 AATTTTTCAAATGAA GATAA AAC TTATC TTTGTTTTTAATAAA TERM 3256 2207050 - 2207066 + H 76 -4.5 -5.42131 | GAAGATAAAACTTAT CTTTGTT TTT AATAAAG TTTTTTCTATAATTA CLI_2077 2207361 - 2208491 + | DEAD-box ATP dependent DNA helicase TERM 3257 2208470 - 2208503 + F 75 -8.3 -3.52316 | opp_overlap 2208460 2208470, overlap 2208466 GAAAACTTTAACAAA TTCTAAAGAGGATAA TAAA TAATCCTCTCTAGAA TTGATTATATATCCA TERM 3258 2208503 - 2208470 - f 95 -10.5 -4.24711 | opp_overlap 2208470 2208466, overlap 2208460 GAAAACTTTAACAAA TTCTAAAGAGGATAA TAAA TAATCCTCTCTAGAA TTGATTATATATCCA CLI_2078 2208811 - 2209602 + | SCP-like extracellular protein TERM 3259 2209658 - 2209613 - T 100 -17.3 -3.75519 | opp_overlap 2209621 2209624, overlap 2209615 2209617 2209621 2209657 AATAAACATATAGAA CATATAAATAATAGGAACTGC TTTA GCAGTTCCTATTATTTAAATA TAAAATATAGACCTC TERM 3260 2209656 - 2209615 - T 100 -17.7 -3.43689 | opp_overlap 2209621 2209624, overlap 2209613 2209617 2209621 TAAACATATAGAACA TATAAATAATAGGAACTGC TTTA GCAGTTCCTATTATTTAAA TATAAAATATAGACC TERM 3261 2209654 - 2209617 - T 100 -20.3 -3.26989 | opp_overlap 2209621 2209624, overlap 2209615 2209613 2209621 AACATATAGAACATA TAAATAATAGGAACTGC TTTA GCAGTTCCTATTATTTA AATATAAAATATAGA TERM 3262 2209650 - 2209621 - T 100 -16.7 -4.26393 | opp_overlap 2209621 2209624, overlap 2209617 2209615 2209613 TATAGAACATATAAA TAATAGGAACTGC TTTA GCAGTTCCTATTA TTTAAATATAAAATA TERM 3263 2209621 - 2209650 + T 100 -16.7 -3.71378 | opp_overlap 2209617 2209615 2209613 2209621, overlap 2209624 TATAGAACATATAAA TAATAGGAACTGC TTTA GCAGTTCCTATTA TTTAAATATAAAATA TERM 3264 2209624 - 2209647 + T 100 -14 -3.98913 | opp_overlap 2209621 2209617 2209615 2209613, overlap 2209621 AGAACATATAAATAA TAGGAACTGC TTTA GCAGTTCCTA TTATTTAAATATAAA CLI_2079 2211051 - 2209705 - | GntR family transcriptional regulator CLI_2080 2211200 - 2212108 + | hypothetical protein aspB-2 2213550 - 2212399 - | aspartate aminotransferase TERM 3265 2212977 - 2212991 + g 72 -5 -4.74518 | overlap 2212979 CTAAATCATTTTCTA TGGCTA TTT TAGCTA TTTCTTTTAGTAATT CLI_2082 2214292 - 2213570 - | polar amino acid ABC transporter ATP-binding protein TERM 3266 2213836 - 2213859 + g 85 -8.2 -4.52502 | overlap 2213833 TAACATCCGGTTCCA TAGCTAAAGC TCTT GCTATAGCTA TTCTTTGTTTTTGCC CLI_2083 2214965 - 2214279 - | His/Glu/Gln/Arg/opine ABC transporter permease TERM 3267 2215024 - 2214989 - R 100 -12.2 -4.77165 | opp_overlap 2214990 2214997, overlap 2214990 CCCCTTATAATAAAA TCATAAAAGATAATGA TGCT TCATTATCTTTTATGT TTTGAGTGTATTATT TERM 3268 2215023 - 2214990 - R 100 -15.7 -3.45817 | opp_overlap 2214990 2214997, overlap 2214989 CCCTTATAATAAAAT CATAAAAGATAATGA TGCT TCATTATCTTTTATG TTTTGAGTGTATTAT TERM 3269 2214990 - 2215023 + r 100 -15.7 -4.28977 | opp_overlap 2214990 2214989, overlap 2214997 CCCTTATAATAAAAT CATAAAAGATAATGA TGCT TCATTATCTTTTATG TTTTGAGTGTATTAT TERM 3270 2214997 - 2215016 + r 86 -8 -4.90471 | opp_overlap 2214990 2214989, overlap 2214990 AATAAAATCATAAAA GATAATGA TGCT TCATTATC TTTTATGTTTTGAGT CLI_2084 2215853 - 2215035 - | polar amino acid ABC transporter amino acid-binding protein CLI_2085 2217221 - 2215941 - | hypothetical protein TERM 3271 2217420 - 2217392 - R 88 -8.2 -4.81249 | opp_overlap 2217381 TTTGAAATTTAAAAA CCACACTCCAGT TGAAT ACTGAAATGCGG TTTTTAAATAAATAT CLI_2086 2218724 - 2217585 - | aminotransferase, class V cat-2 2219502 - 2218837 - | chloramphenicol acetyltransferase CLI_2088 2220210 - 2219998 - | hypothetical protein TERM 3272 2220314 - 2220304 - R 73 -2.6 -5.72622 | opp_overlap 2220304, overlap 2220297 TTTATAAATAAAAAA TTTA AGC TAAA TATAATAAAAAAATA TERM 3273 2220450 - 2220424 - R 87 -6.6 -5.28176 | TTTACCGATAAAAAA GCACAATGACTT TTT ACATCACTGTGC AATCTCTTAATCAAT CLI_2089 2220697 - 2220476 - | hypothetical protein CLI_2090 2221988 - 2221272 - | hypothetical protein CLI_2091 2222428 - 2222213 - | DNA-binding protein CLI_2092 2222816 - 2222421 - | hypothetical protein TERM 3274 2222825 - 2222870 + r 77 -7.9 -4.0828 | opp_overlap 2222838 2222845 2222846 2222849 TATTCATACTATCCC TCCACGTTATATATTTATAAC TTAT GTTATAATTATATAACATGAA TTTGGTATTTTCAAT TERM 3275 2223151 - 2223170 + r 70 -7.8 -3.32159 | opp_overlap 2223152, overlap 2223146 CTTCATGCTTTAAAA AGGCAGTC AAAT GACTGCCC TTAAATTTCATATAA TERM 3276 2223169 - 2223152 - R 100 -11.3 -4.58395 | opp_overlap 2223151 2223146 TTCATGCTTTAAAAA GGCAGTC AAAT GACTGCC CTTAAATTTCATATA CLI_2093 2224602 - 2223250 - | amino acid/peptide transporter TERM 3277 2224847 - 2224870 + r 100 -8.2 -5.63504 | opp_overlap 2224847 AAATTTATAAAAAAA GAAGCCATTG TAAA CAATGACTTC TTTTTTTATAAACTT TERM 3278 2224870 - 2224847 - R 100 -10.4 -5.68039 | opp_overlap 2224847 AAATTTATAAAAAAA GAAGCCATTG TAAA CAATGACTTC TTTTTTTATAAACTT CLI_2094 2226259 - 2224913 - | amino acid/peptide transporter TERM 3279 2226655 - 2226640 - H 85 -3.4 -6.28401 | TAAAAAATAAAAAAA TTTAAA AATT TTTAAA AAGGAAAGAATCAAT TERM 3280 2227645 - 2227633 - g 72 -7.7 -3.64466 | ATTTCACACACAGAA CAGGA CAT TCCTG CGGCTTAGAAGATCA pepQ 2226768 - 2227856 + | proline dipeptidase pepIP 2227938 - 2228819 + | proline iminopeptidase TERM 3281 2228874 - 2228901 + T 100 -10.6 -4.7268 | opp_overlap 2228874, overlap 2228876 CACGTAAATTACAAA GAGGCTGTCATG CAAC TATGACAGCCCC TTTTATTAAGTCTTT TERM 3282 2228901 - 2228874 - T 100 -12.1 -4.14725 | opp_overlap 2228874 2228876 CACGTAAATTACAAA GAGGCTGTCAT GCAACT ATGACAGCCCC TTTTATTAAGTCTTT TERM 3283 2228876 - 2228899 + T 86 -11.8 -2.64104 | opp_overlap 2228874, overlap 2228874 CGTAAATTACAAAGA GGCTGTCATG CAAC TATGACAGCC CCTTTTATTAAGTCT CLI_2097 2229092 - 2228967 - | hypothetical protein CLI_2098 2230602 - 2229109 - | sodium:neurotransmitter symporter family protein TERM 3284 2230557 - 2230569 + g 71 -5.5 -4.386 | AACCAATAGCTGCAA GTAGG AAC CCTGC TTTTGTCCCCCATTG TERM 3285 2230687 - 2230664 - R 87 -6 -5.72622 | opp_overlap 2230675 2230677 2230679 TTTATAAATAAAAAA GCCCCACAGT TTAT ACTATGAGAC TTTTTTACCTAGGAT TERM 3286 2230734 - 2230712 - R 100 -12.1 -4.52047 | opp_overlap 2230679 2230677 2230675 2230712 TAGGATATTACAAAA GTCCCATAG TATAT CTATGGGAC TTTATTTATTTCAAT TERM 3287 2230712 - 2230734 + r 100 -12.1 -4.7923 | opp_overlap 2230712, overlap 2230679 2230677 2230675 TAGGATATTACAAAA GTCCCATAG TATAT CTATGGGAC TTTATTTATTTCAAT CLI_2099 2231652 - 2231005 - | hypothetical protein CLI_2100 2234166 - 2231689 - | thrombospondin type 3 repeat-containing protein TERM 3288 2234428 - 2234410 - R 75 -7.5 -3.9654 | opp_overlap 2234412, overlap 2234408 CAAAGCCCAAAAAGA CAGGTAA TAAAT TTACCTG CTTAAAATATCAATA TERM 3289 2234528 - 2234502 - R 78 -5.3 -5.10461 | gap 1, opp_overlap 2234502 TTTATTTAATAAAAA GTGTG-CTTATG AAAA CATAAAACACAC TTTAATATCTGTTTA CLI_2101 2235082 - 2234582 - | nitroreductase family protein CLI_2102 2237130 - 2235187 - | hypothetical protein TERM 3290 2236548 - 2236534 - G 76 -2.8 -5.64873 | opp_overlap 2236534 TTCAATAATAAAAAA GCTATT TGC AAAAGC TCTATGTCTAGGCAT TERM 3291 2236594 - 2236613 + g 74 -2.2 -5.51165 | AATGGTCTTACCTGT TTTTTTCA TATA TGAAACAA TTTTTTTAAAATTTT CLI_2103 2238380 - 2237145 - | hypothetical protein TERM 3292 2237483 - 2237495 + g 74 -6.3 -4.4634 | GTCCTTTATTGCCTA TCACT ATA AGTGA TTTCTTGTTACCATT CLI_2104 2240488 - 2238377 - | hypothetical protein TERM 3293 2240547 - 2240589 + r 95 -11.7 -3.57797 | gap 1, opp_overlap 2240547 2240557, overlap 2240557 TATCAAATGGCAATA TGAATAAAAATCCCGATTTT TTTA AAATTCGGGATTTTTAT-CA TTATCTAACTTTAAA TERM 3294 2240589 - 2240547 - R 93 -11.7 -3.13382 | gap 1, opp_overlap 2240547 2240557, overlap 2240557 TATCAAATGGCAATA TGAATAAAAATCCCGATTTT TTTA AAATTCGGGATTTTTAT-CA TTATCTAACTTTAAA TERM 3295 2240580 - 2240557 - R 95 -8.2 -5.19251 | opp_overlap 2240557 2240547, overlap 2240547 CAATATGAATAAAAA TCCCGATTTT TTTA AAATTCGGGA TTTTTATCATTATCT TERM 3296 2240557 - 2240580 + r 91 -8.2 -5.02439 | opp_overlap 2240547 2240557, overlap 2240547 CAATATGAATAAAAA TCCCGATTTT TTTA AAATTCGGGA TTTTTATCATTATCT CLI_2105 2242403 - 2240610 - | 67 kDa myosin-cross-reactive antigen family protein TERM 3297 2241262 - 2241281 + g 83 -7.8 -4.60713 | CCACCTGTTACAGTG CGTCCACC GTAT GGTGAACG TTTTGTGATCTTTTC TERM 3298 2241875 - 2241860 - G 70 -6.2 -4.10429 | opp_overlap 2241859 AATCAGTGTTTAAAA GTTCTT CAGA AAGAAC ATCTTCAATAGATTT TERM 3299 2242596 - 2242650 + r 100 -23.4 -4.62471 | opp_overlap 2242601 2242609, overlap 2242609 TTTGTGTCTTTTTCA TTAGATAAATAAACTGTGGTGTTCGA AAT TCAAACACCGCAGTTTGTTTATCTAA TTTTTAGGCATTGAG TERM 3300 2242645 - 2242601 - R 100 -15.3 -2.78384 | opp_overlap 2242596 2242609, overlap 2242609 GTCTTTTTCATTAGA TAAATAAACTGTGGTGTTCGA AAT TCAAACACCGCAGTTTGTTTA TCTAATTTTTAGGCA TERM 3301 2242609 - 2242637 + r 100 -12.5 -4.64952 | opp_overlap 2242601 2242609, overlap 2242596 CATTAGATAAATAAA CTGTGGTGTTCGA AAT TCAAACACCGCAG TTTGTTTATCTAATT TERM 3302 2242637 - 2242609 - R 100 -12.5 -4.64048 | opp_overlap 2242609 2242596, overlap 2242601 CATTAGATAAATAAA CTGTGGTGTTCGA AAT TCAAACACCGCAG TTTGTTTATCTAATT CLI_2106 2243276 - 2242707 - | TetR family transcriptional regulator TERM 3303 2242763 - 2242746 - G 73 -8.5 -3.41878 | TCGTTTAAGGGATAA TTCGATG TTTC CATCGAA GAGATACCCAATTCG TERM 3304 2243063 - 2243047 - G 82 -7.3 -4.79352 | opp_overlap 2243047 GCAGCTACAATAAAA CTCTCCT CCC AGGAAAG TGTATCATTATATTC CLI_2109 2244850 - 2244473 - | hypothetical protein TERM 3305 2244752 - 2244733 - GH 70 -8.6 -2.72096 | opp_overlap 2244732 2244732, overlap 2244732 2244750 TTGACGAAGCAGAAG CGATCCCT GAGG AGGAATCG ACTTTCGAGTCTAAA TERM 3306 2244932 - 2244913 - gR 70 -8.6 -2.72096 | opp_overlap 2244912 2244912, overlap 2244912 2244930 TTGACGAAGCAGAAG CGATCCCT GAGG AGGAATCG ACTTTCGAGTCTAAA TERM 3307 2245040 - 2245021 - gR 72 -8.6 -2.98966 | opp_overlap 2245020 2245021, overlap 2245020 TTAGCAAAACAGAAG TGGTCCCT AGGG AGGAACCA ATTTTCGAGTCTAAA CLI_2110 2244804 - 2246051 + | hypothetical protein TERM 3308 2246129 - 2246154 + Tr 90 -6.1 -5.88471 | GTATTCAGATATTTA CTGCCCTAAGT TGAA GCTAAGGGTAG TTTTTTTTGCTCATA TERM 3309 2246310 - 2246354 + Tr 75 -3.8 -5.5762 | gap 2, opp_overlap 2246310 GCTTACTATAAAAAA CGGCTTCTTCCCAACATATC CTTTGCT GGT-TGTTTG-AAGAAGCCG TTTTTTATATTTAAT CLI_2111 2247572 - 2246511 - | hypothetical protein TERM 3310 2246657 - 2246673 + g 79 -9.5 -3.40775 | overlap 2246649 2246648 2246656 TTCCTTCTTCAAGCT CCTTGAA TGT TTCAAGG TATTTCCATGCGAAT CLI_2112 2248260 - 2247616 - | hexapeptide repeat-containing transferase CLI_2113 2249491 - 2248352 - | aminotransferase CLI_2114 2250436 - 2249537 - | hypothetical protein TERM 3311 2251490 - 2251468 - g 82 -10.8 -2.68434 | opp_overlap 2251473, overlap 2251470 2251473 TGCCATAGCAGATGA TACAACTATT ACA AATAGTTGTA TAGGGCCTTATACCT TERM 3312 2251488 - 2251470 - g 71 -9 -2.8844 | opp_overlap 2251473, overlap 2251468 2251473 CCATAGCAGATGATA CAACTATT ACA AATAGTTG TATAGGGCCTTATAC CLI_2115 2250638 - 2251699 + | glucose-1-phosphate thymidylyltransferase TERM 3313 2252640 - 2252628 - g 91 -4.8 -5.83211 | overlap 2252636 CAGTAAAATAAAAAA CCAG TTAAG CTGG GCTTGCAGCTATAAG rfbB 2251741 - 2252721 + | dTDP-glucose 4,6-dehydratase CLI_2117 2252764 - 2252952 + | hypothetical protein CLI_2118 2252997 - 2253290 + | hypothetical protein TERM 3314 2253338 - 2253303 - f 100 -12 -3.89501 | opp_overlap 2253308 TAAGACTTGTATAAA GGCACGGTTTAATAGG GAAA CCTATTGAACCATACC CTAAACCGATACGTA CLI_2119 2253541 - 2253834 + | hypothetical protein TERM 3315 2253945 - 2253901 - T 95 -10 -4.24204 | opp_overlap 2253901 2253902, overlap 2253902 GACCGATACGGAAAA GCAAGAGAGAGGCGTTGCCC TCAAG GGATAGCACCTCTCTCTTGT CTTTTGAAAGCTTAT TERM 3316 2253901 - 2253946 + T 95 -10.6 -4.12599 | gap 2, opp_overlap 2253901 2253902, overlap 2253902 GACCGATACGGAAAA G-CAAGAGAGAGGCGTTG-CCC TCAA GGGATAGCACCTCTCTCTTGTC TTTTGAAAGCTTATT TERM 3317 2253944 - 2253902 - T 100 -13.5 -3.1404 | opp_overlap 2253902 2253901, overlap 2253901 ACCGATACGGAAAAG CAAGAGAGAGGCGTTGCCC TCAAG GGATAGCACCTCTCTCTTG TCTTTTGAAAGCTTA TERM 3318 2253902 - 2253944 + T 100 -14.3 -3.6543 | gap 1, opp_overlap 2253901 2253902, overlap 2253901 ACCGATACGGAAAAG CAAGAGAGAGGCGTTG-CCC TCAA GGGATAGCACCTCTCTCTTG TCTTTTGAAAGCTTA CLI_2121 2256161 - 2254872 - | lipase TERM 3319 2256182 - 2256217 + r 77 -6.4 -4.62054 | gap 1, opp_overlap 2256182, overlap 2256186 TGCTCCTTTACATCA TAAATTCTGTAGCC-AG CAG CTAGGCTATATAATTTA TTTTACTTTGATTAA TERM 3320 2256995 - 2256972 - R 100 -8.9 -5.22006 | gap 1 TTACCATAACAAAAA GCGGAG-AGC ATCTA GCTTCTCCGC TGGGAACAATAGCTT CLI_2122 2257808 - 2257134 - | vanZF protein CLI_2123 2259130 - 2257949 - | macrolide glycosyltransferase TERM 3321 2259141 - 2259155 + r 89 -4.3 -6.11392 | CTCATCATATTCTCC TTCAG ACTCA CTGAA TTTTTTTATTTCTTT CLI_2124 2259428 - 2259123 - | AbrB family transcriptional regulator TERM 3322 2259570 - 2259548 - R 95 -8.5 -5.22006 | opp_overlap 2259548 CTATTACAATAAAAA GACCAGTGA TTAAC TCACTAGTC TTCCTGAATCAAACA codA 2260874 - 2259609 - | cytosine deaminase CLI_2126 2262189 - 2260918 - | cytosine permease TERM 3323 2262286 - 2262261 - R 100 -12.1 -5.5112 | TTGATTAATAAAAAA GACCTTTTATA TTTC TATAAAAGGTC GTAAAAATCACTATA CLI_2127 2262579 - 2262448 - | hypothetical protein CLI_2128 2263870 - 2262746 - | radical SAM domain-containing protein TERM 3324 2264162 - 2264131 - R 71 -8.2 -2.99584 | gap 1, overlap 2264130 2264128 TGTATAATAAAATAG TTTGCTACCAGCTCT AAA AAAGC-AGTAGCAAA TACATGATTTTTATA CLI_2129 2264339 - 2264208 - | hypothetical protein CLI_2130 2266634 - 2264991 - | DNA (cytosine-5-)-methyltransferase TERM 3325 2266016 - 2266026 + g 72 -4 -5.02476 | ACTGTTCTATTAATT TAGT ATT ACTA TTTTTTGAAAAGTAT CLI_2131 2268456 - 2266705 - | hypothetical protein TERM 3326 2267137 - 2267148 + g 70 -5.8 -4.25283 | overlap 2267118 TGGATATTTCATCCA TGCC ATTT GGCA TTTTGCTGCAACAGT CLI_2132 2269469 - 2268453 - | hypothetical protein CLI_2133 2272236 - 2269453 - | hypothetical protein CLI_2134 2273752 - 2272271 - | hypothetical protein TERM 3327 2272538 - 2272550 + g 75 -4.9 -5.02715 | ACATTTTTTACCTTC TTCAT TTA ATGAA TTTTTAATTTCATAT TERM 3328 2272965 - 2272981 + g 73 -3.7 -5.18371 | opp_overlap 2272965, overlap 2272967 GCCGCTTTTTTATAA TCCTCTT CAG AAGAGAA TTTTGTTTTATGAGG TERM 3329 2273589 - 2273605 + g 84 -6.7 -5.22258 | CATACTAGAATATTT TTTGATT CCC AATCAAA TTTTATTTTAATTTG CLI_2135 2275854 - 2274385 - | hypothetical protein TERM 3330 2275244 - 2275254 + g 86 -5.4 -5.65927 | opp_overlap 2275244 TCTGGAATCTCAGAA GACA CAT TGTC TTTTTTCTTTGCATC CLI_2136 2277126 - 2275867 - | hypothetical protein TERM 3331 2277642 - 2277669 + r 75 -8.6 -3.56161 | AATTGAACGGTCAGC TGTATTCATTGT TCCT ACAATGTATACA TTATCTGGTACGTTA TERM 3332 2279908 - 2279870 - R 100 -9 -5.83226 | opp_overlap 2279870 AATCTAACAAAAAAA TAGCCAGTTAAGAATGAC TCT ATCATACTCAATTGGCTA TACCTTAAACTCTTA CLI_2141 2282015 - 2280846 - | hypothetical protein TERM 3333 2282302 - 2282264 - R 100 -12 -5.0538 | opp_overlap 2282264 2282267, overlap 2282268 TCTTATTTCAAAAAA TAAATCACATCATGGA TATAAGT TCCATGATGTGACCTA TTCTAATTTTATTAG TERM 3334 2282264 - 2282302 + r 73 -7.6 -3.75686 | opp_overlap 2282264 2282268, overlap 2282267 TCTTATTTCAAAAAA TAAATCACATCATGGA TATAAGT TCCATGATGTGACCTA TTCTAATTTTATTAG TERM 3335 2282267 - 2282299 + r 75 -9.3 -2.64934 | opp_overlap 2282264 2282268, overlap 2282264 TATTTCAAAAAATAA ATCACATCATGGA TATAAGT TCCATGATGTGAC CTATTCTAATTTTAT TERM 3336 2282298 - 2282268 - R 100 -12.8 -5.05153 | opp_overlap 2282267 2282264, overlap 2282264 ATTTCAAAAAATAAA TCACATCATGGA TATAAGT TCCATGATGTGA CCTATTCTAATTTTA TERM 3337 2282463 - 2282477 + r 75 -5.8 -4.9934 | overlap 2282471 TTGTTTTTTACTTTT TAATCT TCT AGATTA TTTTTATAATATTCT CLI_2142 2283385 - 2282462 - | NAD-dependent epimerase/dehydratase family protein CLI_2143 2283790 - 2285142 + | glycosyl transferase, group 2 CLI_2144 2285181 - 2287628 + | glycosyl transferase, group 1 family protein TERM 3338 2287657 - 2287687 + T 72 -6.2 -4.4267 | opp_overlap 2287657 2287656 2287652, overlap 2287651 AACTATATGAGAAAG TTGACAATGATCAG TTA TTGCACATTGTCAA TTTTCGGTTTTAAGA CLI_2145 2289848 - 2287893 - | putative tetracycline resistance protein TERM 3339 2290279 - 2290251 - R 93 -9.7 -4.37527 | opp_overlap 2290256 2290257, overlap 2290257 TCATAATTATGAAAA CAAAAACTCCCAC TAT GTGAGAGCTTTTA ATTTATTACTCTATT TERM 3340 2290273 - 2290257 - R 100 -8.7 -5.50723 | opp_overlap 2290256 2290257, overlap 2290251 TTATGAAAACAAAAA CTCCCAC TAT GTGAGAG CTTTTAATTTATTAC CLI_2146 2293141 - 2290364 - | enhancing factor TERM 3341 2290916 - 2290938 + g 71 -7.2 -3.78904 | overlap 2290920 ATTAAAGTTTTTACC TAAATAAGGA CTT TCTTTATTTA TTGTTGAATTTGGTA TERM 3342 2293616 - 2293650 + r 93 -10.2 -4.03167 | opp_overlap 2293595 2293621, overlap 2293621 TATTCAAAACACAAC AAAAACGTCCCTAAAT TAG ATTTAGCGACGTTTTC TTATTTACGTTGTAA TERM 3343 2293621 - 2293645 + r 100 -10.1 -5.011 | opp_overlap 2293621, overlap 2293616 AAAACACAACAAAAA CGTCCCTAAAT TAG ATTTAGCGACG TTTTCTTATTTACGT TERM 3344 2293645 - 2293621 - R 100 -10.1 -5.35365 | opp_overlap 2293621 2293616 AAAACACAACAAAAA CGTCCCTAAAT TAG ATTTAGCGACG TTTTCTTATTTACGT cadA-2 2295547 - 2293676 - | cadmium-translocating P-type ATPase TERM 3345 2293843 - 2293857 + g 82 -5 -5.41746 | AGCTCAAGTTGATCT TGATGG TGG TCATCA TTTTTTTCGAAAGTT TERM 3346 2295289 - 2295273 - G 75 -5.8 -4.77567 | ATTTGCATAATAAAA GCTACC TCACC GGCAGC AAAAATTTCTCCAAT TERM 3347 2295563 - 2295608 + r 91 -12.9 -2.91264 | gap 1, overlap 2295566 GTTATAACACTCCTT CC-ATACCTATAGGGGTATA TGTACAT TGTACCCCTATGGGTATAGG TATGTCAATAAAAAA CLI_2148 2296004 - 2295729 - | hypothetical protein TERM 3348 2296014 - 2296039 + r 74 -8.3 -3.30731 | opp_overlap 2296013, overlap 2296016 2296037 TTTCATAAAAGCACC TCCGCATACCC TTAG GGGTATGTGTA TATTATACTGATTAA TERM 3349 2296016 - 2296037 + r 90 -10.9 -3.21438 | opp_overlap 2296013, overlap 2296014 TCATAAAAGCACCTC CGCATACCC TTAG GGGTATGTG TATATTATACTGATT TERM 3350 2296080 - 2296114 + r 100 -11.6 -4.25606 | opp_overlap 2296085, overlap 2296085 GTCAATGAAATAATT AAAAACGCCGCTAAAT TAG ATTTAGCGACGTTTTC TTATTTTAAATCTTA TERM 3351 2296085 - 2296109 + r 100 -11.5 -5.093 | opp_overlap 2296085, overlap 2296080 TGAAATAATTAAAAA CGCCGCTAAAT TAG ATTTAGCGACG TTTTCTTATTTTAAA TERM 3352 2296109 - 2296085 - R 100 -13.7 -5.04356 | opp_overlap 2296080 2296085 TGAAATAATTAAAAA CGCCGCTAAAT TAG ATTTAGCGACG TTTTCTTATTTTAAA CLI_2149 2296417 - 2296127 - | microcompartments family protein CLI_2150 2297142 - 2296492 - | propanediol utilization protein PduL-like protein eutE 2298740 - 2297142 - | acetaldehyde dehydrogenase (acetylating) TERM 3353 2298424 - 2298407 - G 71 -7.7 -3.40299 | overlap 2298376 GTACTATACCCATAA CTAAGCC AACT GGCTCAG CGATTTCTATAAGCT CLI_2152 2299659 - 2298775 - | putative carbon dioxide concentrating mechanism protein CcmK-like protein CLI_2153 2300342 - 2299680 - | ethanolamine utilization protein EutQ-like protein CLI_2154 2300795 - 2300532 - | putative polyhedral organelle formation protein CLI_2155 2301094 - 2300792 - | hypothetical protein TERM 3354 2301116 - 2301171 + r 71 -7.3 -3.92001 | ACACTCTCCTTATTA GGCACATGAAAATAAATA-ACAAGTCA AAGA TGGCA-GTATATTTATTTTCATGTGAC TTATTCTATAATATC CLI_2156 2302017 - 2301172 - | ethanolamine utilization protein EutJ family protein CLI_2157 2302715 - 2301999 - | hypothetical protein CLI_2158 2303168 - 2302722 - | EutP/PduV family GTP-binding protein CLI_2159 2303518 - 2303165 - | ethanolamine utilization protein EutS-like protein CLI_2160 2304511 - 2303558 - | glycyl-radical enzyme activating family protein TERM 3355 2304567 - 2304602 + r 86 -9.2 -4.10781 | opp_overlap 2304566, overlap 2304558 2304568 TATATCTTAATTTAC ATCTGCAATCTACA AAACAGGC TGTAGATTGCAGAC TTTATATAAATTATT TERM 3356 2304568 - 2304601 + r 93 -12.7 -3.05384 | opp_overlap 2304566, overlap 2304567 2304558 ATATCTTAATTTACA TCTGCAATCTACA AAACAGGC TGTAGATTGCAGA CTTTATATAAATTAT CLI_2161 2307233 - 2304693 - | formate acetyltransferase TERM 3357 2305890 - 2305904 + g 77 -5.8 -4.93296 | opp_overlap 2305892 GCGAATAACGTCAAC TATCTT TTT AAGATA TTTTTGTGGTGATGA TERM 3358 2307262 - 2307278 + r 79 -3.8 -5.80951 | overlap 2307251 2307249 ATTCTTTAATGTATT TCATAT ATTAA ATATGA TTTTTTATTTTAAGT CLI_2162 2308776 - 2307283 - | aldehyde dehydrogenase family protein CLI_2163 2309122 - 2308814 - | microcompartments family protein CLI_2164 2309442 - 2309146 - | microcompartments family protein CLI_2165 2309667 - 2309515 - | hypothetical protein CLI_2166 2310012 - 2309746 - | hypothetical protein TERM 3359 2309867 - 2309892 + g 88 -5.5 -5.63517 | overlap 2309865 AGACCATTAGCTTCT GCTGTAAGTAG TGCA TTAATTACAGC TTTTTTGTTTAGAGC CLI_2167 2311111 - 2309999 - | hypothetical protein TERM 3360 2311185 - 2311148 - R 71 -6.7 -4.08846 | opp_overlap 2311142, overlap 2311142 2311177 ATAAAAAATTAATAA TATTATAAATTCATATT GTTA AATAAAAATTTATAATA AATATACATTAAGAT TERM 3361 2311478 - 2311445 - R 95 -12.7 -3.7642 | opp_overlap 2311445 2311451, overlap 2311451 CTTAAGGAATAAATA TAGAAATACCTGGAT AATA ATCCAGGTATTTTTA ATTCTATAAAAACAA TERM 3362 2311445 - 2311478 + r 100 -14.9 -2.68823 | opp_overlap 2311445 2311451, overlap 2311451 CTTAAGGAATAAATA TAGAAATACCTGGAT AATA ATCCAGGTATTTTTA ATTCTATAAAAACAA TERM 3363 2311451 - 2311472 + r 100 -11.7 -4.96646 | opp_overlap 2311445 2311451, overlap 2311445 GAATAAATATAGAAA TACCTGGAT AATA ATCCAGGTA TTTTTAATTCTATAA TERM 3364 2311472 - 2311451 - R 100 -11.7 -4.33576 | opp_overlap 2311451 2311445, overlap 2311445 GAATAAATATAGAAA TACCTGGAT AATA ATCCAGGTA TTTTTAATTCTATAA CLI_2168 2312427 - 2311597 - | MerR family transcriptional regulator TERM 3365 2312532 - 2312511 - R 93 -9.5 -4.70613 | opp_overlap 2312528 2312530 AAAATTTGAACAAAA TACCACCCA TTAA TGAGTGGTA TAAAATATATACTAT CLI_2169 2313686 - 2312544 - | alcohol dehydrogenase, iron-containing TERM 3366 2313785 - 2313797 + H 70 -4.9 -4.77983 | opp_overlap 2313777 2313785 TAACAATCAAACTAA GTTTA TAA TAAAC TTTTCTTAATGTATT TERM 3367 2314117 - 2314163 + H 88 -4.9 -5.90231 | gap 2 TAGCTTATTTCATGA TACTTAAC-TTTATTCCT-TTAG GTC TTAGTAGGAATAAATGTTAGGTA TTTTTTTATGTTTAT CLI_2170 2314199 - 2315500 + | MATE efflux family protein TERM 3368 2315586 - 2315540 - T 100 -17 -3.15579 | opp_overlap 2315541 2315546, overlap 2315546 AATAACTCAAAATTA TCAAAACTAACCATCATTATAA CTG TGATAATGATGGTTAGTTTTGT TTTTGTTTTACATAG TERM 3369 2315541 - 2315585 + T 100 -20.5 -5.48213 | opp_overlap 2315540 2315546, overlap 2315546 ATAACTCAAAATTAT CAAAACTAACCATCATTATAA CTG TGATAATGATGGTTAGTTTTG TTTTTGTTTTACATA TERM 3370 2315580 - 2315546 - T 100 -14.6 -4.42667 | opp_overlap 2315546 2315541, overlap 2315540 TCAAAATTATCAAAA CTAACCATCATTATAA CTG TGATAATGATGGTTAG TTTTGTTTTTGTTTT TERM 3371 2315546 - 2315580 + T 100 -14.6 -5.51078 | opp_overlap 2315540 2315546, overlap 2315541 TCAAAATTATCAAAA CTAACCATCATTATAA CTG TGATAATGATGGTTAG TTTTGTTTTTGTTTT CLI_2171 2316853 - 2315609 - | major facilitator transporter TERM 3372 2315919 - 2315909 - G 74 -5.4 -4.94222 | AATAATCCATAAAAA CACA AAT TGTG AGCTTCCATAAAGTA TERM 3373 2316790 - 2316778 - G 74 -7.7 -3.84639 | opp_overlap 2316778 2316775 TAATACCTATAATAA GCATC AGT GATGC TGATTTGCGTACCTT CLI_2172 2317583 - 2316894 - | GntR family transcriptional regulator CLI_2173 2317746 - 2318645 + | MarR family transcriptional regulator CLI_2174 2318786 - 2318905 + | hypothetical protein CLI_2175 2319491 - 2318985 - | hypothetical protein CLI_2176 2320420 - 2319632 - | hypothetical protein TERM 3374 2321012 - 2320963 - R 79 -8.3 -4.18908 | gap 1, overlap 2320949 2320966 2320972 ATATTGTTAAAACAA TAATTAAAAGCCTCAATCACC-AT TCT ATCGGTAATTAATGCTTTTAATCA ATCATATAATCTATA TERM 3375 2321009 - 2320966 - R 78 -7.8 -4.20868 | gap 1, overlap 2320963 2320972 TTGTTAAAACAATAA TTAAAAGCCTCAATCACC-AT TCT ATCGGTAATTAATGCTTTTAA TCAATCATATAATCT CLI_2177 2321587 - 2321225 - | hypothetical protein CLI_2178 2322088 - 2321600 - | excisionase family DNA-binding protein TERM 3376 2322347 - 2322374 + r 100 -10 -4.46854 | opp_overlap 2322352, overlap 2322352 AACTTATCCATAAGA AAAAACAGCATC CTAA GATGCTGTTTTA TTTATTCTTCACTAA TERM 3377 2322369 - 2322352 - R 100 -9.9 -5.56673 | opp_overlap 2322347 2322352 ATCCATAAGAAAAAA CAGCATC CTAA GATGCTG TTTTATTTATTCTTC TERM 3378 2322352 - 2322369 + r 100 -9.9 -5.18297 | opp_overlap 2322352, overlap 2322347 ATCCATAAGAAAAAA CAGCATC CTAA GATGCTG TTTTATTTATTCTTC CLI_2179 2323010 - 2322372 - | sortase family protein CLI_2180 2325690 - 2322979 - | hypothetical protein TERM 3379 2323681 - 2323700 + gr 70 -7.8 -3.36112 | TCCTGAAGTTACATC GTGCTGGT CTGA ACCTGCAC TTAAGTATTTTTTAA CLI_2181 2327026 - 2326007 - | sensor histidine kinase CLI_2182 2327694 - 2327023 - | DNA-binding response regulator TERM 3380 2327764 - 2327724 - R 78 -8.6 -3.94773 | overlap 2327722 2327727 CCTTAATATAAAATA TAAGACTATTAAACTTTG GGAAA CAAAATCTAATAGCCCTA ATAATTATTATAAGA TERM 3381 2327761 - 2327727 - R 79 -8.1 -4.08271 | overlap 2327724 2327722 TAATATAAAATATAA GACTATTAAACTTTG GGAAA CAAAATCTAATAGCC CTAATAATTATTATA CLI_2183 2328601 - 2327891 - | hypothetical protein CLI_2184 2330822 - 2328594 - | hypothetical protein TERM 3382 2329509 - 2329499 - G 72 -8.2 -3.31792 | TCACTACTGGCATAA GCCC AGC GGGC ATAGTAAGCTGACAT CLI_2185 2331700 - 2330825 - | ABC transporter, ATP-binding protein CLI_2186 2333743 - 2331761 - | ABC transporter, permease protein TERM 3383 2333976 - 2333950 - R 100 -12.4 -5.83226 | opp_overlap 2333950 AATGCAACAAAAAAA CCCTCGACTAAT TTA ATTAGCCGAAGG TTTAATGATGAAGGT TERM 3384 2333950 - 2333976 + r 73 -8 -3.78953 | opp_overlap 2333950 AATGCAACAAAAAAA CCCTCGACTAAT TTA ATTAGCCGAAGG TTTAATGATGAAGGT CLI_2187 2335136 - 2334051 - | putative oxidoreductase CLI_2188 2335374 - 2335129 - | hypothetical protein CLI_2189 2335882 - 2335391 - | hypothetical protein TERM 3385 2336291 - 2336261 - R 100 -12 -4.84527 | opp_overlap 2336263 TTTATATATCAAAAA CAGGTAGTCCAATT CAA ACTTAGACTACCTG TATACCTGTAAATAT CLI_2190 2337357 - 2336335 - | zinc-binding dehydrogenase family oxidoreductase CLI_2191 2338299 - 2337442 - | AP endonuclease CLI_2192 2339522 - 2338383 - | putative 3-dehydroquinate synthase TERM 3386 2339899 - 2339946 + r 73 -6.8 -4.22554 | gap 1, opp_overlap 2339900 2339902 2339905, overlap 2339905 CCTCTCTAACATAAA ATA-TAAGGCTATTAAATTTT AGATAAC AAAATTTAATAGCCTTAATAA TTATTTATTCAATAA TERM 3387 2339945 - 2339900 - R 100 -11 -4.66537 | gap 1, opp_overlap 2339899 2339905, overlap 2339902 2339905 CTCTCTAACATAAAA TA-TAAGGCTATTAAATTTTA GATAA CAAAATTTAATAGCCTTAATA ATTATTTATTCAATA TERM 3388 2339942 - 2339902 - R 100 -15.2 -3.94773 | opp_overlap 2339899 2339905, overlap 2339900 2339905 CTCTAACATAAAATA TAAGGCTATTAAATTTTA GATAA CAAAATTTAATAGCCTTA ATAATTATTTATTCA TERM 3389 2339905 - 2339939 + r 95 -11.8 -3.35961 | opp_overlap 2339902 2339900 2339905, overlap 2339899 TAACATAAAATATAA GGCTATTAAATTTT AGATAAC AAAATTTAATAGCC TTAATAATTATTTAT TERM 3390 2339939 - 2339905 - R 100 -12.5 -4.08271 | opp_overlap 2339905 2339899, overlap 2339902 2339900 TAACATAAAATATAA GGCTATTAAATTTTA GATAA CAAAATTTAATAGCC TTAATAATTATTTAT TERM 3391 2340026 - 2340079 + r 95 -10.5 -3.98083 | opp_overlap 2340028, overlap 2340028 ATAGGTCTCTAGATA AAGATTTCTAAGCTTTAGTATGAGT AAAA ACTCTCTCTGAAGCTTAGAAATCTG TTTATAAATTAAATA TERM 3392 2340028 - 2340077 + r 100 -13.1 -3.57808 | opp_overlap 2340028, overlap 2340026 AGGTCTCTAGATAAA GATTTCTAAGCTTTAGTATGAGT AAAA ACTCTCTCTGAAGCTTAGAAATC TGTTTATAAATTAAA TERM 3393 2340077 - 2340028 - R 100 -13.1 -4.03413 | opp_overlap 2340026 2340028 AGGTCTCTAGATAAA GATTTCTAAGCTTTAGTATGAGT AAAA ACTCTCTCTGAAGCTTAGAAATC TGTTTATAAATTAAA CLI_2193 2342079 - 2340088 - | ABC transporter, permease protein CLI_2194 2342836 - 2342069 - | ABC transporter, ATP-binding protein TERM 3394 2343281 - 2343320 + r 74 -8.8 -2.96873 | gap 1, opp_overlap 2343284 2343286, overlap 2343285 2343286 2343288 CCCATTAAAGCTTAT TAACAGACTTCTTAGGAGT TTT ACTCCTTAAAAGTC-GTTA TCCTTTAGTGGAAAT TERM 3395 2343317 - 2343284 - R 72 -8.3 -3.20747 | gap 1, opp_overlap 2343281 2343285 2343286 2343288, overlap 2343286 ATTAAAGCTTATTAA CAGACTTCTTAGGAGT TTT ACTCCTTAAAAGTC-G TTATCCTTTAGTGGA TERM 3396 2343316 - 2343286 - R 93 -12 -3.16288 | opp_overlap 2343285 2343281 2343286 2343288, overlap 2343284 TAAAGCTTATTAACA GACTTCTTAGGAGT TTT ACTCCTTAAAAGTC GTTATCCTTTAGTGG TERM 3397 2343286 - 2343316 + r 80 -9.8 -2.77227 | opp_overlap 2343286 2343284, overlap 2343285 2343281 2343288 TAAAGCTTATTAACA GACTTCTTAGGAGT TTT ACTCCTTAAAAGTC GTTATCCTTTAGTGG TERM 3398 2343414 - 2343442 + r 79 -8.9 -3.6608 | opp_overlap 2343419, overlap 2343419 GTAGTCATCGGATAA AAAAAGCCCTCAC ATT GTGATGGCTTTTG TTTAAGTAAACTAAT TERM 3399 2343437 - 2343419 - R 100 -8.8 -5.626 | opp_overlap 2343414 2343419 CATCGGATAAAAAAA GCCCTCAC ATT GTGATGGC TTTTGTTTAAGTAAA TERM 3400 2343419 - 2343437 + r 93 -8.8 -4.90778 | opp_overlap 2343419, overlap 2343414 CATCGGATAAAAAAA GCCCTCAC ATT GTGATGGC TTTTGTTTAAGTAAA TERM 3401 2343524 - 2343513 - R 73 -3 -5.8096 | opp_overlap 2343513 TACAAAAAATAAAAA TTAC TATA GTAA TTTATCTCCTATAGC CLI_2195 2343977 - 2343624 - | hypothetical protein TERM 3402 2344258 - 2344286 + r 100 -10.4 -5.39905 | opp_overlap 2344258 2344263, overlap 2344263 TAAATTATTACAAAA CAAAAGCTCCCA GATTA TGAGAGCTTTTG TTTTTATTATTTAAT TERM 3403 2344286 - 2344258 - R 100 -12.6 -4.52703 | opp_overlap 2344258 2344263, overlap 2344263 TAAATTATTACAAAA CAAAAGCTCCCA GATTA TGAGAGCTTTTG TTTTTATTATTTAAT TERM 3404 2344263 - 2344281 + r 76 -4.5 -5.44638 | opp_overlap 2344263 2344258, overlap 2344258 TATTACAAAACAAAA GCTCCCA GATTA TGAGAGC TTTTGTTTTTATTAT TERM 3405 2344281 - 2344263 - R 83 -6.7 -5.20781 | opp_overlap 2344258 2344263, overlap 2344258 TATTACAAAACAAAA GCTCCCA GATTA TGAGAGC TTTTGTTTTTATTAT CLI_2196 2346395 - 2344302 - | PRD domain-containing protein TERM 3406 2345954 - 2345971 + g 76 -6.3 -4.66746 | TTTTTATGCCCTGTC CCTTTGA GCTT TCAAGGG TTATTTTATTTTCTA CLI_2197 2347971 - 2346607 - | ascorbate-specific PTS system enzyme IIC CLI_2198 2348268 - 2347984 - | PTS system, L-ascorbate family, IIB component CLI_2199 2348734 - 2348297 - | PTS system, L-ascorbate family, IIA component CLI_2200 2349474 - 2348758 - | putative translaldolase TERM 3407 2349691 - 2349672 - R 89 -4.4 -6.01187 | gap 1, opp_overlap 2349672 AAGCAAATAAAAAAA GGATACCTA CAT TA-GTATCC TTTTTTATGACAATA TERM 3408 2349672 - 2349691 + r 73 -4.4 -5.252 | gap 1, opp_overlap 2349672 AAGCAAATAAAAAAA GGATACCTA CAT TA-GTATCC TTTTTTATGACAATA CLI_2201 2350113 - 2349709 - | hypothetical protein TERM 3409 2350407 - 2350377 - R 100 -10.7 -4.41177 | opp_overlap 2350382 TACATAAATTTAAAA GGATATTGATAAA ATACA CTTATCAATATCC TAGAAAATACAATTA CLI_2202 2351185 - 2350451 - | hypothetical protein TERM 3410 2350506 - 2350521 + g 70 -4 -4.92385 | overlap 2350504 CGTGCTTGTGATACT GTTGTT TCAT AACAGC TTTTCTTTAAATATC TERM 3411 2351319 - 2351367 + r 85 -8.6 -4.65032 | gap 1, opp_overlap 2351324 2351333, overlap 2351333 TTTTATCTATCCCCT TTAAATACTAAAAACCTGTCCTA AAAA TA-GACAGGTTTTTAATATTAAA TTTATTTATGATTTG TERM 3412 2351362 - 2351324 - R 91 -10.7 -3.53811 | gap 1, opp_overlap 2351319 2351333, overlap 2351333 TCTATCCCCTTTAAA TACTAAAAACCTGTCCTA AAAA TA-GACAGGTTTTTAATA TTAAATTTATTTATG TERM 3413 2351353 - 2351333 - R 72 -4.8 -4.93696 | gap 1, opp_overlap 2351333 2351319, overlap 2351324 TTTAAATACTAAAAA CCTGTCCTA AAAA TA-GACAGG TTTTTAATATTAAAT TERM 3414 2351333 - 2351353 + r 70 -4.8 -4.88228 | gap 1, opp_overlap 2351324 2351333, overlap 2351319 TTTAAATACTAAAAA CCTGTCCTA AAAA TA-GACAGG TTTTTAATATTAAAT CLI_2203 2351542 - 2351369 - | hypothetical protein TERM 3415 2351645 - 2351661 + r 76 -9.5 -2.75914 | opp_overlap 2351636, overlap 2351636 2351644 AGTAAGCGATTCACA CCAAATC GTA GATTTGG GTTCTCTGCTTAAAT CLI_2204 2353547 - 2353053 - | hypothetical protein CLI_2205 2354204 - 2353590 - | O-acetyltransferase family protein CLI_2207 2355195 - 2356586 + | amino acid/peptide transporter TERM 3416 2356652 - 2356616 - T 75 -3.9 -5.56263 | opp_overlap 2356616 ATTACAAAACAAAAA CCTATCTTAAGCATT ATATTTA AATAGCTAAGATAGG TTTTAAAGTTAAAAT CLI_2208 2357430 - 2356690 - | hypothetical protein CLI_2209 2358327 - 2357437 - | AraC family transcriptional regulator CLI_2210 2358628 - 2359149 + | hypothetical protein TERM 3417 2359170 - 2359207 + F 73 -8 -3.66654 | opp_overlap 2359170 AACAATTTATATAGA CTCCATTAAAAGAA AATATTTAAC TTCTTTTAATGGGG TTTAAAATTCCAATA CLI_2211 2359741 - 2359878 + | hypothetical protein TERM 3418 2361339 - 2361313 - T 95 -5.3 -6.04324 | gap 1, opp_overlap 2361313 GTAAAAAACAAAAAA CTAGATATGGAT ATAA ACCCAT-TCTAG TTTTTTGCAAAAGTC enr 2363355 - 2361358 - | 2-enoate reductase TERM 3419 2362085 - 2362101 + g 85 -10.9 -3.20723 | opp_overlap 2362083 TTGTGTCCACGAATG GCTGCAA CTC TTGCAGC TTCCATTCCTGCAAC CLI_2213 2364249 - 2363452 - | MerR family transcriptional regulator TERM 3420 2364264 - 2364284 + r 100 -11.3 -4.15788 | TAATTCCCTCCTTTC TACCTAAAG TCA CTTTAGGTA TTTGTTAAAAAGATT CLI_2214 2364591 - 2364298 - | hypothetical protein cmr6 2366323 - 2365025 - | CRISPR-associated RAMP Cmr6 family protein TERM 3421 2365367 - 2365381 + g 77 -7.2 -4.26938 | TTTCTCATTATTTTC TGTTTG TTC CAAACA TTCTTCTTTTGTAAC TERM 3422 2365531 - 2365548 + g 74 -7.1 -4.0156 | TTGAATTATTATCTT GCAATAA ACAT TTATTGC TTATTCTTAATATAA TERM 3423 2365644 - 2365657 + g 86 -3.1 -5.95539 | CCATTTTGATAATGT GGTGT CATA ACATC TTTTTTTATTTCAAA cmr5 2366795 - 2366316 - | CRISPR-associated Cmr5 family protein cmr4 2367658 - 2366795 - | CRISPR-associated RAMP Cmr4 family protein family protein CLI_2218 2368943 - 2367672 - | hypothetical protein TERM 3424 2367748 - 2367764 + g 76 -3.8 -5.42131 | GCTCTATCAGCTGCT TTACAT GCTGA ATGTAA TTTTTTATCTAGTTC cmr3 2370049 - 2368946 - | CRISPR-associated Cmr3 family protein crm2 2371775 - 2370030 - | CRISPR-associated RAMP Crm2 family protein cmr1 2372959 - 2371778 - | CRISPR-associated RAMP Cmr1 family protein TERM 3425 2371995 - 2372005 + g 72 -5.4 -4.75372 | TAGTTTTCTATGAGC TCAC CCC GTGA TTTTTGATAAATAGT cas6 2373694 - 2373005 - | CRISPR-associated Cas family protein TERM 3426 2373877 - 2373848 - R 100 -11.7 -4.37658 | opp_overlap 2373847 2373853 2373855 2373876, overlap 2373853 AAGCTTTGCATAAAA TAAAAGCCTTAGA TTCT TCTAAGACTTTTA ATGATTCTTATTATA TERM 3427 2373872 - 2373853 - R 87 -7.2 -5.18371 | opp_overlap 2373853 2373847 2373855, overlap 2373848 TTGCATAAAATAAAA GCCTTAGA TTCT TCTAAGAC TTTTAATGATTCTTA TERM 3428 2374321 - 2374311 - R 78 -5.4 -5.19328 | opp_overlap 2374311, overlap 2374312 ATTTCATAATAAAAA CCTA TCC TAGG CCTTATATTTCAATG CLI_2223 2376013 - 2374409 - | hypothetical protein CLI_2224 2376258 - 2376145 - | hypothetical protein TERM 3429 2376242 - 2376213 - G 89 -4.3 -5.83211 | opp_overlap 2376213 GATTAAAATAAAAAA CTCCTAATCCTAT ACTT AAAGGAATAAGAG TTCTCTTTAACCACA TERM 3430 2376307 - 2376282 - R 73 -7.1 -4.16251 | ATATAATGTTGAAAA TTTTAAAGTCA TACC TAACTTTAAAA ACTATAAATCTTTAA TERM 3431 2376620 - 2376610 - R 75 -4 -5.60556 | AATATAAAATAAAAA CTTA CCA TAAG CCTTATGTGTCAACG CLI_2225 2377609 - 2376761 - | PhzF family phenazine biosynthesis protein TERM 3432 2377750 - 2377777 + r 72 -8.6 -3.14132 | opp_overlap 2377739 2377740, overlap 2377754 CAAATTGTTCATCAA CTAAGAAAGGTA GAAA TGTCTTTCTTAG TTGATAAAAACAAAC CLI_2226 2378820 - 2377900 - | PhzF family phenazine biosynthesis protein TERM 3433 2379438 - 2379450 + G 72 -7.7 -3.63092 | opp_overlap 2379437 2379438, overlap 2379437 TTTTCAGTGGCAAAT GTCTG TGC CAGAC TATTTATCTCGGTCT CLI_2227 2379145 - 2380638 + | GntR family transcriptional regulator CLI_2228 2382075 - 2381710 - | glyoxalase family protein TERM 3434 2381890 - 2381901 + g 78 -3 -5.62045 | CCCCTCACTTCGTGA CAAA ACAC TTTG TTTTTTATTATATAT CLI_2229 2382420 - 2382199 - | hypothetical protein TERM 3435 2382880 - 2382844 - H 70 -6 -4.30704 | overlap 2382841 2382838 AATACAAAATAAGAA CCTATTCCAATCCTTA TATAT CAATGACTAGAATAGG TTTATAAATTTATTG CLI_2230 2383088 - 2383534 + | hypothetical protein TERM 3436 2383573 - 2383545 - T 85 -11.1 -2.87146 | opp_overlap 2383545 2383550, overlap 2383550 CATAATATGATCATA TAAAAGCCCTCAC ACT GTGAGAGCTTTTC TTTAAAAATACTTTT TERM 3437 2383545 - 2383573 + T 79 -8.9 -3.60431 | opp_overlap 2383545 2383550, overlap 2383550 CATAATATGATCATA TAAAAGCCCTCAC ACT GTGAGAGCTTTTC TTTAAAAATACTTTT TERM 3438 2383550 - 2383568 + T 93 -8.8 -4.87803 | opp_overlap 2383545 2383550, overlap 2383545 TATGATCATATAAAA GCCCTCAC ACT GTGAGAGC TTTTCTTTAAAAATA TERM 3439 2383568 - 2383550 - T 100 -11 -4.58424 | opp_overlap 2383550 2383545, overlap 2383545 TATGATCATATAAAA GCCCTCAC ACT GTGAGAGC TTTTCTTTAAAAATA TERM 3440 2383668 - 2383681 + T 73 -6.7 -4.31692 | opp_overlap 2383667 AATACCAGCAACAGC GCCAT TAAT ATGGC TTTTGCTAATAAGTT CLI_2231 2384797 - 2383766 - | putative lipase/esterase CLI_2232 2385228 - 2386127 + | hypothetical protein TERM 3441 2386166 - 2386219 + F 81 -7.7 -4.42976 | opp_overlap 2386167, overlap 2386167 TAAAGAAACTGAATA AGGATTTCTAAGTTTAAGAGAGAAT AAAA ACTTACTCTTAAACTTAAAAATCCG TTTATTAATTTCTAC TERM 3442 2386167 - 2386218 + F 90 -11.2 -3.24701 | opp_overlap 2386167, overlap 2386166 AAAGAAACTGAATAA GGATTTCTAAGTTTAAGAGAGAAT AAAA ACTTACTCTTAAACTTAAAAATCC GTTTATTAATTTCTA TERM 3443 2386218 - 2386167 - f 100 -13.4 -3.8253 | opp_overlap 2386166 2386167 AAAGAAACTGAATAA GGATTTCTAAGTTTAAGAGAGAAT AAAA ACTTACTCTTAAACTTAAAAATCC GTTTATTAATTTCTA TERM 3444 2386855 - 2386875 + G 70 -5.6 -4.20074 | opp_overlap 2386857 GGATTATGGCCGCAA TATATATG ATAGG CATATATA TTTTAAACTATATTT CLI_2233 2386467 - 2387789 + | proton-linked D-serine/D-alanine/glycine symporter TERM 3445 2387835 - 2387800 - T 90 -10.7 -3.41025 | opp_overlap 2387798 2387797, overlap 2387798 AATAAATTAAATAGA GTGTGTCAAAATAGA CTTAAT TTTATTTTGACACAC AACCTTACTTTAAAC CLI_2234 2388591 - 2387857 - | protein kinase domain-containing protein hgdC-2 2389867 - 2389094 - | 2-hydroxyglutaryl-CoA dehydratase component A TERM 3446 2389678 - 2389689 + g 71 -2.2 -5.43414 | GGATTCTACCATAAC CTGT AACT ACGG TTTTTTCTATATCCT CLI_2236 2391526 - 2389961 - | hypothetical protein TERM 3447 2390376 - 2390389 + g 72 -5.3 -4.72188 | overlap 2390375 TCATTATCTTCTTTT GATGA CGTA TCATC TTTATTTTCAATTAA TERM 3448 2391762 - 2391725 - R 100 -17.3 -3.79113 | opp_overlap 2391725 ATTTCTTTATAATAA CCTCCCTATTCTAATAT CTTT AAATTAGAATAGGGAGG TTTATAATAAAATAC TERM 3449 2391725 - 2391762 + r 100 -17.3 -3.9712 | opp_overlap 2391725 ATTTCTTTATAATAA CCTCCCTATTCTAATAT CTTT AAATTAGAATAGGGAGG TTTATAATAAAATAC CLI_2237 2392875 - 2391826 - | electron transfer flavoprotein, alpha subunit/FixB family protein CLI_2238 2393679 - 2392894 - | electron transfer flavoprotein, beta subunit/FixA family protein CLI_2239 2394851 - 2393718 - | acyl-CoA dehydrogenase family protein TERM 3450 2394380 - 2394394 + g 70 -3.6 -5.16151 | opp_overlap 2394367 AGTCACAAATAGGTG CATTTG TAA TAAATG TTTTTCTTCCATTTA CLI_2240 2395222 - 2395094 - | hypothetical protein CLI_2241 2396476 - 2395349 - | putative R-2-hydroxyglutaryl-CoA dehydratase, beta subunit CLI_2242 2397708 - 2396476 - | putative R-2-hydroxyglutaryl-CoA dehydratase, alpha subunit TERM 3451 2397505 - 2397529 + g 74 -6.4 -4.45485 | overlap 2397509 AGATAAAGATTCTTT CTTAGCTGCA ACCCC TGCAGCTTGG TTTTCTGGATATAAT TERM 3452 2397509 - 2397525 + g 74 -8 -3.76186 | overlap 2397505 AAAGATTCTTTCTTA GCTGCA ACCCC TGCAGC TTGGTTTTCTGGATA CLI_2243 2398985 - 2397771 - | putative hydroxyacyl-CoA:R-2-hydroxyglutaryl-CoA transferase CLI_2244 2400455 - 2399634 - | iron-sulfur cluster-binding protein TERM 3453 2400096 - 2400084 - G 76 -7.7 -3.92075 | ATGTTCACCTATAAA TGCAG CCC CTGCA ACAACTTTAAAACCA TERM 3454 2401191 - 2401175 - g 75 -4.5 -5.04987 | overlap 2401178 AATACCTTGAAAAAA TATGCAT GAA ATACATA CTAGAGCCCCTTAAG CLI_2245 2401015 - 2402286 + | putative R-2-hydroxyglutaryl-CoA dehydratase subunit TERM 3455 2403066 - 2403049 - g 71 -2.1 -5.34655 | CAATTAAAAAGAAAA TTAATAT TCCC ATACTAA AGATTGAAACTGATT CLI_2246 2402289 - 2403983 + | putative R-2-hydroxyglutaryl-CoA dehydratase subunit/ R-2-hydroxyglutaryl-CoA dehydratase activase, putative CLI_2247 2405432 - 2404281 - | putative methyl-accepting chemotaxis protein TERM 3456 2404590 - 2404612 + g 70 -6.4 -4.06905 | opp_overlap 2404606 CTTTGTTTCATCAGC TATCTCCTTT ATA AAAGAAGATA TTTCATTAATTTCTT CLI_2248 2405937 - 2405764 - | hypothetical protein TERM 3457 2406029 - 2405981 - R 100 -15.7 -3.69332 | opp_overlap 2405981 2405984, overlap 2405989 2405992 TAAGAATATTTTAAA TGCTAATATAATTAAGCTCCCAC AAT GTGAGAGCTTAATTATATTATTA TTTTAACTATTTAAT TERM 3458 2405981 - 2406029 + r 100 -15.7 -4.32903 | opp_overlap 2405981 2405989 2405992, overlap 2405984 TAAGAATATTTTAAA TGCTAATATAATTAAGCTCCCAC AAT GTGAGAGCTTAATTATATTATTA TTTTAACTATTTAAT TERM 3459 2405984 - 2406026 + r 100 -19.6 -4.2651 | opp_overlap 2405981 2405989 2405992, overlap 2405981 GAATATTTTAAATGC TAATATAATTAAGCTCCCAC AAT GTGAGAGCTTAATTATATTA TTATTTTAACTATTT TERM 3460 2406021 - 2405989 - R 100 -17.3 -3.12668 | opp_overlap 2405984 2405981, overlap 2405981 2405992 TTTTAAATGCTAATA TAATTAAGCTCCCAC AAT GTGAGAGCTTAATTA TATTATTATTTTAAC TERM 3461 2406018 - 2405992 - R 100 -14.6 -3.7014 | opp_overlap 2405984 2405981, overlap 2405989 2405981 TAAATGCTAATATAA TTAAGCTCCCAC AAT GTGAGAGCTTAA TTATATTATTATTTT CLI_2249 2406635 - 2406036 - | hypothetical protein TERM 3462 2407019 - 2406980 - R 72 -8.9 -2.62616 | opp_overlap 2406979 2406985 2406987, overlap 2406985 2406987 CTACTGGCCACACTA TAAAAGACTATCTCAAA ATTTAA TTTAAGATAGGCTTTTA CGTTATTAATTTATG CLI_2250 2408014 - 2407025 - | linear amide C-N hydrolase TERM 3463 2408098 - 2408130 + r 76 -8.1 -3.81447 | opp_overlap 2408102 2408116 2408127, overlap 2408102 2408127 2408129 ATGCGATTATCCTTT TAAATATTATTTTTA CAA TAAACATAATATTTA TTCTTGTAGAATATA TERM 3464 2408266 - 2408208 - R 100 -15.3 -5.46698 | gap 2, opp_overlap 2408212, overlap 2408212 TGTAAAATTAAAAAA TAAATCTAAACAAAGTGTAAAAGAGCTCA TTA TAAGCTCTTTTACACTTTATTTAGATT-- TATTTTTGAATAATT TERM 3465 2408264 - 2408212 - R 100 -25.5 -5.14819 | opp_overlap 2408212, overlap 2408208 AAATTAAAAAATAAA TCTAAACAAAGTGTAAAAGAGCTCA TTA TAAGCTCTTTTACACTTTATTTAGA TTTATTTTTGAATAA TERM 3466 2408212 - 2408264 + r 100 -21.1 -4.89063 | opp_overlap 2408208 2408212 AAATTAAAAAATAAA TCTAAACAAAGTGTAAAAGAGCTCA TTA TAAGCTCTTTTACACTTTATTTAGA TTTATTTTTGAATAA CLI_2251 2408874 - 2408281 - | acetyltransferase CLI_2252 2409219 - 2409632 + | fosfomycin resistance family protein TERM 3467 2409701 - 2409672 - T 95 -10.9 -3.53779 | opp_overlap 2409670 2409669 2409677 2409681 TTCTTAAAATACGAA TTAAGGAAAGTCA TTTC TGGCTTTCCTTAA AAATTGATATATTAT TERM 3468 2409786 - 2409759 - T 100 -13.6 -4.58773 | opp_overlap 2409755 2409759, overlap 2409737 TTTATTAAAGTAAAA TTCAGCTGAAGT AAAA ACTCCAGCTGAA TTGGTTTACATTTTA TERM 3469 2409759 - 2409786 + T 95 -11.4 -3.60899 | opp_overlap 2409737 2409759, overlap 2409755 TTTATTAAAGTAAAA TTCAGCTGAAGT AAAA ACTCCAGCTGAA TTGGTTTACATTTTA gntP 2411187 - 2409799 - | gluconate permease TERM 3470 2410907 - 2410891 - G 70 -8.1 -3.05384 | opp_overlap 2410894, overlap 2410894 TCTTTTTTTACCTAA GAACTTT ATA AAAGTTC TAGCCATTCTCTCCG CLI_2254 2411366 - 2411238 - | hypothetical protein pdxA 2412427 - 2411423 - | 4-hydroxythreonine-4-phosphate dehydrogenase CLI_2256 2413777 - 2412440 - | hypothetical protein TERM 3471 2413440 - 2413462 + g 72 -7 -4.11692 | opp_overlap 2413437, overlap 2413437 GCCTCTGGGAAAGCT GGTACTACAG CAG CTATGGTACC TTTTGGAAGTGCATC CLI_2257 2414600 - 2413842 - | DeoR family transcriptional regulator TERM 3472 2414920 - 2414970 + H 85 -10.2 -3.12353 | opp_overlap 2414918 2414932 2414937, overlap 2414918 AAATATTTTGAAACC TTTAGTTTAATATTGAATTAAAAC TGT GTTTTAACTCAATATTGAAATGAA TATATATATTAATCT TERM 3473 2414958 - 2414932 - H 85 -10.4 -3.05963 | opp_overlap 2414920 2414918, overlap 2414918 2414937 ACCTTTAGTTTAATA TTGAATTAAAAC TGT GTTTTAACTCAA TATTGAAATGAATAT CLI_2258 2415139 - 2415306 + | hypothetical protein TERM 3474 2415467 - 2415442 - T 73 -5.4 -4.84918 | overlap 2415435 TCTACAAATATAAAA GCACCCAGCC GTTATA AGCTGAATGC TCTTTATAATCTTAT CLI_2259 2416440 - 2415547 - | CAAX amino terminal protease family protein TERM 3475 2415790 - 2415800 + g 70 -4 -4.85599 | TCCGCAGGCTCCCCA CAAA TTC TTTG TTTTTATAACATACA TERM 3476 2416259 - 2416240 - G 82 -4.4 -5.56263 | gap 1, overlap 2416234 AGTAGAAAATAAAAA CCCTGTTAT TAG ATAA-AGGG AAAAATTAATTGGTG CLI_2260 2416855 - 2418240 + | ErfK/YbiS/YcfS/YnhG family protein TERM 3477 2418322 - 2418367 + T 85 -8.6 -4.6902 | gap 1, opp_overlap 2418327, overlap 2418325 2418327 AACTTCGGTAACTTT TTAA-AGGGACTATCCCAAAA ATAAA TTTTGAGATAGTCCCTCTTCA TTTTTAACATTATAG TERM 3478 2418325 - 2418363 + T 95 -11.9 -3.82528 | opp_overlap 2418327, overlap 2418322 2418327 TTCGGTAACTTTTTA AAGGGACTATCCCAAAA ATAAA TTTTGAGATAGTCCCTC TTCATTTTTAACATT TERM 3479 2418361 - 2418327 - T 100 -16.7 -3.57561 | opp_overlap 2418327 2418325 2418322 CGGTAACTTTTTAAA GGGACTATCCCAAAA ATAAA TTTTGAGATAGTCCC TCTTCATTTTTAACA TERM 3480 2418327 - 2418361 + T 100 -14.5 -3.48505 | opp_overlap 2418327, overlap 2418325 2418322 CGGTAACTTTTTAAA GGGACTATCCCAAAA ATAAA TTTTGAGATAGTCCC TCTTCATTTTTAACA CLI_2261 2418573 - 2418409 - | hypothetical protein CLI_2262 2419278 - 2418685 - | TetR family transcriptional regulator TERM 3481 2419698 - 2419711 + G 71 -2.4 -5.40474 | ATAGATCGTTCCATA GGTA TATTAC TACC TTTTTTTCAAAAAAT CLI_2263 2419422 - 2419949 + | hypothetical protein CLI_2264 2420091 - 2420741 + | hypothetical protein TERM 3482 2421098 - 2421088 - g 72 -5.4 -4.78597 | TCAATAACAAATAAA GCTA CTA TAGC TACAGATGATAATAA TERM 3483 2423014 - 2423004 - g 71 -6.8 -3.90897 | CAAATATGATAAGAA TGCC CTA GGCA CATATATTAATACAT TERM 3484 2423415 - 2423403 - g 81 -2.7 -5.78622 | TGAGCTTAAAAAAAA TCCTA AAG TAGAA ATAGTAACTCCTGAA CLI_2265 2421007 - 2423469 + | hypothetical protein TERM 3485 2423480 - 2423517 + T 93 -13.1 -2.85668 | opp_overlap 2423480, overlap 2423482 2423487 ATTGATTCTTAAAAA TATTTAACCTACTATAA ACAA TTTTAGTAGGTTAAATA TGTAATCTAAAAATA TERM 3486 2423517 - 2423480 - T 100 -13.1 -4.60041 | opp_overlap 2423480 2423482 2423487 ATTGATTCTTAAAAA TATTTAACCTACTATAA ACAA TTTTAGTAGGTTAAATA TGTAATCTAAAAATA TERM 3487 2423482 - 2423515 + T 87 -11.3 -2.97747 | opp_overlap 2423480, overlap 2423480 2423487 TGATTCTTAAAAATA TTTAACCTACTATAA ACAA TTTTAGTAGGTTAAA TATGTAATCTAAAAA CLI_2266 2424612 - 2423539 - | zinc-binding dehydrogenase family oxidoreductase TERM 3488 2425035 - 2425010 - R 83 -7.8 -4.63044 | opp_overlap 2425010 ATGTAGATAAAGAAA TAACTACAAA TTTTAT TTTGTAGTTA TTTATTGAATTAGTC TERM 3489 2425010 - 2425035 + r 78 -7.8 -4.26351 | opp_overlap 2425010 ATGTAGATAAAGAAA TAACTACAAA TTTTAT TTTGTAGTTA TTTATTGAATTAGTC CLI_2267 2427024 - 2425060 - | carbon monoxide dehydrogenase TERM 3490 2427095 - 2427112 + H 73 -4.2 -5.1848 | ACCTCTATAATGCTA TACCAT AAGCCA ATGGTA TTTTTTCACTTCCTT hypA-2 2427818 - 2428159 + | hydrogenase nickel insertion protein HypA TERM 3491 2428330 - 2428320 - g 76 -2.6 -5.56673 | AGCTATAATAAAAAA TATT AAT AATA GAGAAAAATTAGCAG hypB-2 2428162 - 2428800 + | hydrogenase accessory protein HypB TERM 3492 2428817 - 2428790 - T 85 -10 -3.18467 | opp_overlap 2428790, overlap 2428792 AAATTTGCAATTTAA TAGGTGGTTAAT TAAA ACTAACCACCCA TGTACTTATTCGTTG TERM 3493 2428815 - 2428792 - T 87 -10.4 -3.15056 | opp_overlap 2428790, overlap 2428790 ATTTGCAATTTAATA GGTGGTTAAT TAAA ACTAACCACC CATGTACTTATTCGT CLI_2270 2429179 - 2428823 - | dinitrogenase iron-molybdenum cofactor family protein CLI_2271 2430141 - 2429275 - | iron-sulfur binding protein CLI_2272 2430962 - 2430132 - | iron-sulfur binding protein CLI_2273 2431346 - 2430987 - | dinitrogenase iron-molybdenum cofactor family protein CLI_2274 2432325 - 2431948 - | hypothetical protein motB-1 2433384 - 2432620 - | chemotaxis MotB protein motA-1 2434187 - 2433402 - | flagellar motor protein MotA TERM 3494 2434586 - 2434561 - R 91 -8.3 -5.0916 | TTCTTAATATAAAAA GCCCCATAGGT TTTC ACCTACAGAGC TTTACTTTATAAACT CLI_2277 2436525 - 2434909 - | amidase domain-containing protein TERM 3495 2436642 - 2436613 - R 73 -6.7 -4.30104 | opp_overlap 2436614 2436617 2436627 2436637, overlap 2436610 2436614 2436617 TAAAGTAATAAATAA GTAATATTGTATA ATTA TATACAATATTAT TCTAATATTCCATAT TERM 3496 2436614 - 2436641 + r 89 -10.2 -3.52787 | opp_overlap 2436613 2436610 2436614 2436617, overlap 2436617 2436627 2436637 AAAGTAATAAATAAG TAATATTGTATA ATTA TATACAATATTA TTCTAATATTCCATA TERM 3497 2436641 - 2436614 - R 85 -10.2 -3.16435 | opp_overlap 2436614 2436617 2436627 2436637, overlap 2436613 2436610 2436617 AAAGTAATAAATAAG TAATATTGTATA ATTA TATACAATATTA TTCTAATATTCCATA TERM 3498 2436669 - 2436617 - R 73 -7.5 -3.68979 | opp_overlap 2436617 2436614 2436627 2436637, overlap 2436614 2436613 2436610 GTAATAAATAAGTAA TATTGTATAATTATATACAATATTA TTC TAATATTCCATATAAATTTACAATA CAATAATTTATAACT TERM 3499 2436617 - 2436638 + r 75 -7.5 -3.89291 | opp_overlap 2436614 2436613 2436610 2436617, overlap 2436614 2436627 2436637 GTAATAAATAAGTAA TATTGTATA ATTA TATACAATA TTATTCTAATATTCC TERM 3500 2436831 - 2436810 - R 73 -4.4 -5.14563 | TTTTTGATTAAAAAA GCCTCAGA AATTAA TCCAAGGC TTTATTATATCTAAT CLI_2278 2437465 - 2436842 - | hypothetical protein TERM 3501 2437663 - 2437641 - R 90 -7.8 -4.98522 | opp_overlap 2437643 AATTTCATACAAAAA GAGTCCTA TTCAATT TAGGACTC TCGTCAAAATAAGGA CLI_2279 2438086 - 2437745 - | hypothetical protein CLI_2280 2440047 - 2438092 - | OPT family oligopeptide transporter TERM 3502 2439101 - 2439113 + g 71 -3.4 -5.22006 | CCTATTCCTCCCATT GCTT GTTTA AAGC TTTTTATTATAGTAG pepD-2 2441610 - 2440165 - | aminoacyl-histidine dipeptidase TERM 3503 2441830 - 2441849 + r 72 -3.7 -5.27477 | TAACGTTTACCTATA GTAATTA TTCAAT TAATTAC TTTTTTCATTAAAGT TERM 3504 2442097 - 2442047 - R 100 -17.6 -4.08064 | opp_overlap 2442052, overlap 2442052 AAGGGTGCTTTAAAA TAAAATAGATTTAACTTTAATACT AAA AATATTAAAATTAAATCTATTTTA GGACAAACCCTTCTA TERM 3505 2442092 - 2442052 - R 100 -13.1 -5.07652 | opp_overlap 2442052, overlap 2442047 TGCTTTAAAATAAAA TAGATTTAACTTTAATACT AAA AATATTAAAATTAAATCTA TTTTAGGACAAACCC TERM 3506 2442052 - 2442092 + r 82 -8.7 -4.07568 | opp_overlap 2442052 2442047 TGCTTTAAAATAAAA TAGATTTAACTTTAATACT AAA AATATTAAAATTAAATCTA TTTTAGGACAAACCC CLI_2282 2443197 - 2442169 - | putative low specificity L-threonine aldolase TERM 3507 2443709 - 2443661 - H 83 -3.6 -5.90231 | ATAAATATAAAAAAA TTATGTAAAAATAGACTT AGCATAACAAATA AAATCTATTTTTACACAA TCATTTCTATAGATT CLI_2284 2443894 - 2444028 + | hypothetical protein glxK 2445167 - 2444025 - | glycerate kinase TERM 3508 2444243 - 2444254 + g 73 -5.8 -4.62302 | TTGCAACCTTGGCTA CTCC GAAA GGAG TTTTTCCAAATATTG TERM 3509 2444517 - 2444529 + g 88 -9.1 -4.13767 | overlap 2444509 TTTTTTTGCTATTTC GGGAG TAG CTCCC TTTTGAGGTCCAAAA TERM 3510 2444585 - 2444573 - G 77 -7.7 -4.07568 | opp_overlap 2444556 CCTTTTCTCCTAAAA GTGGA TTG TCCAC ATCACAAGCAACTCT CLI_2285 2445518 - 2445387 - | hypothetical protein CLI_2286 2445806 - 2446603 + | short chain dehydrogenase/reductase family oxidoreductase CLI_2287 2448149 - 2446971 - | putative sodium extrusion protein NatB TERM 3511 2447838 - 2447848 + g 76 -6.8 -4.39568 | opp_overlap 2447838 TATGTTTTCATCAAA TCCC TTT GGGA TTTTAATCTGTAGAT CLI_2288 2448882 - 2448163 - | putative sodium extrusion ATP-binding protein NatA TERM 3512 2449174 - 2449227 + r 100 -17.1 -5.05712 | opp_overlap 2449179, overlap 2449179 GAGTAGCTATTACCT AAAAAGTGGGTGTAACAAAATTGCT TTAA AGTAGTTTTGTTACACCCACTTTAC TTTTTACTTATTTAT TERM 3513 2449179 - 2449222 + r 100 -21.4 -4.37737 | opp_overlap 2449179, overlap 2449174 GCTATTACCTAAAAA GTGGGTGTAACAAAATTGCT TTAA AGTAGTTTTGTTACACCCAC TTTACTTTTTACTTA TERM 3514 2449222 - 2449179 - R 100 -17 -4.68593 | opp_overlap 2449179 2449174 GCTATTACCTAAAAA GTGGGTGTAACAAAATTGCT TTAA AGTAGTTTTGTTACACCCAC TTTACTTTTTACTTA CLI_2289 2449797 - 2449348 - | acetyltransferase CLI_2290 2450275 - 2449811 - | MarR family transcriptional regulator TERM 3515 2450293 - 2450314 + H 82 -8.9 -4.06903 | opp_overlap 2450293 TACCACCTTTCGAAA TTTACTTGA ACTT TCAAGTAAA TTTACTTTAACACTT TERM 3516 2450314 - 2450293 - H 79 -8.9 -3.54741 | opp_overlap 2450293 TACCACCTTTCGAAA TTTACTTGA ACTT TCAAGTAAA TTTACTTTAACACTT CLI_2291 2450694 - 2450828 + | hypothetical protein TERM 3517 2450940 - 2450906 - T 100 -13.2 -5.17786 | opp_overlap 2450906 CAACAAAAGCAAAAA TGCTGTCTTAAAAT ACATTTA ATTTTAAGACAGCA TTTTTGGTCCATTCT TERM 3518 2450906 - 2450940 + T 100 -13.2 -4.77759 | opp_overlap 2450906 CAACAAAAGCAAAAA TGCTGTCTTAAAAT ACATTTA ATTTTAAGACAGCA TTTTTGGTCCATTCT CLI_2292 2451439 - 2451035 - | hypothetical protein TERM 3519 2451467 - 2451477 + r 70 -2.6 -5.53288 | overlap 2451456 CATTTAAAACAATTT TTAT TTA ATAA TTTTTTTAAGTTCAG CLI_2293 2452605 - 2451535 - | uroporphyrinogen decarboxylase family protein TERM 3520 2452863 - 2452920 + r 100 -17.5 -3.0672 | opp_overlap 2452871, overlap 2452863 2452871 CTTTTATAAAGTTAT ACCTAAAATGTAAATAAGAGCTACT TTTTTATT AGTAGCTCTTATTTACATCTTAGGC ATTTCCTTATATTTT TERM 3521 2452863 - 2452921 + r 100 -11.5 -4.13911 | gap 1, opp_overlap 2452871, overlap 2452863 2452871 CTTTTATAAAGTTAT -ACCTAAAATGTAAATAAGAGCTACT TTTTTATT AGTAGCTCTTATTTACATCTTAGGCA TTTCCTTATATTTTA TERM 3522 2452912 - 2452871 - R 100 -16.3 -4.24606 | opp_overlap 2452863 2452863 2452871 AAGTTATACCTAAAA TGTAAATAAGAGCTACT TTTTTATT AGTAGCTCTTATTTACA TCTTAGGCATTTCCT TERM 3523 2452871 - 2452912 + r 100 -16.3 -3.08327 | opp_overlap 2452871, overlap 2452863 2452863 AAGTTATACCTAAAA TGTAAATAAGAGCTACT TTTTTATT AGTAGCTCTTATTTACA TCTTAGGCATTTCCT CLI_2294 2454402 - 2452954 - | oxidoreductase, FAD/[2Fe-2S]-binding TERM 3524 2453304 - 2453314 + g 82 -4 -5.5604 | GCTTTCTGTAGGGAT TGAA TTT TTCA TTTTTTATTAATTGC CLI_2295 2454750 - 2455568 + | MerR family transcriptional regulator TERM 3525 2455586 - 2455607 + T 100 -8 -5.94214 | opp_overlap 2455584, overlap 2455587 CTACATGATAAATGC TGCCTGCT TTAAAT AGCAGGCG TTTTTTTGTTATCTT TERM 3526 2455587 - 2455606 + T 86 -9.3 -4.12868 | opp_overlap 2455584, overlap 2455586 TACATGATAAATGCT GCCTGCT TTAAAT AGCAGGC GTTTTTTTGTTATCT TERM 3527 2455704 - 2455676 - T 100 -14.8 -5.40004 | TATCAAATTAAAAAA GCTGTTGACAAA ATATA TTTGTCAACAGC CTGAAATTTATTAAA CLI_2296 2457179 - 2455776 - | amino acid permease family protein TERM 3528 2456474 - 2456500 + g 78 -6.6 -4.65916 | opp_overlap 2456481, overlap 2456476 AGGCAATCATACCTT TTGAAAATCCTG TTT CCGGATTTTCCA TTTTATTAACATAGG TERM 3529 2456476 - 2456498 + g 73 -9.2 -2.62958 | opp_overlap 2456481, overlap 2456474 GCAATCATACCTTTT GAAAATCCTG TTT CCGGATTTTC CATTTTATTAACATA TERM 3530 2456586 - 2456574 - G 77 -4.9 -5.243 | TAAATTAGTAAAAAA TTTTG TAT CAAAA GTTGGCATAAAGGTT TERM 3531 2457526 - 2457493 - R 100 -11.2 -4.7033 | opp_overlap 2457491 2457501, overlap 2457501 TAAGCTAATACAAAA TAGAAAAAGCGCCT GATTTT AGGCCCTTTTTCTA CCATTTATAAACTCA CLI_2297 2458158 - 2457616 - | hypothetical protein CLI_2298 2458792 - 2458535 - | hypothetical protein TERM 3532 2458608 - 2458635 + g 76 -10 -2.71731 | opp_overlap 2458608 2458605 2458604 2458611, overlap 2458611 CCATATTTAAATTTA GAATGTTTAGTC TTAT GCCTAAACATTC TCATTCCCACATAGG TERM 3533 2458635 - 2458608 - G 76 -10 -2.67244 | opp_overlap 2458608 2458611, overlap 2458605 2458604 2458611 CCATATTTAAATTTA GAATGTTTAGTC TTAT GCCTAAACATTC TCATTCCCACATAGG TERM 3534 2459086 - 2459123 + H 81 -5.7 -5.40625 | opp_overlap 2459086 2459088, overlap 2459088 TTCTTTAGAATAAAA TAGTTTGCATAGAAACT AATT AATTCCTATGCAAACCA TTTTTTATATAATAT TERM 3535 2459123 - 2459086 - H 100 -12.3 -4.77165 | opp_overlap 2459086 2459088, overlap 2459088 TTCTTTAGAATAAAA TAGTTTGCATAGAAACT AATT AATTCCTATGCAAACCA TTTTTTATATAATAT TERM 3536 2459121 - 2459088 - H 100 -12.7 -4.00512 | opp_overlap 2459086 2459088, overlap 2459086 CTTTAGAATAAAATA GTTTGCATAGAAACT AATT AATTCCTATGCAAAC CATTTTTTATATAAT CLI_2299 2459152 - 2459277 + | hypothetical protein CLI_2300 2459296 - 2459727 + | MarR family transcriptional regulator CLI_2301 2459730 - 2460122 + | hypothetical protein TERM 3537 2460175 - 2460212 + T 70 -7.1 -3.8125 | opp_overlap 2460166 2460175, overlap 2460173 ATATTAGCTTTAACA GCATCTAAAGCTAGAGA ACTT TATCTAACTCTAGATGC TATTTTAATTAAAGA TERM 3538 2460212 - 2460175 - T 90 -11.5 -3.0497 | opp_overlap 2460173 2460175, overlap 2460166 ATATTAGCTTTAACA GCATCTAAAGCTAGAGA ACTT TATCTAACTCTAGATGC TATTTTAATTAAAGA CLI_2302 2460412 - 2460221 - | hypothetical protein TERM 3539 2460454 - 2460465 + r 70 -4.4 -4.96028 | TATCTAAATATTCTT TAGG ACTT CCTA TTATTTTTTTTAAAA thiM-2 2461494 - 2460697 - | hydroxyethylthiazole kinase TERM 3540 2461273 - 2461292 + g 74 -5.1 -4.90002 | ATAGGCTGTTTTACC TGAAATC AACATA GATTTCA TTTTATTATCTGTTA thiW 2462041 - 2461472 - | thiW protein TERM 3541 2461947 - 2461932 - G 71 -4.6 -4.70613 | opp_overlap 2461932 AAAATGTTAATAAAA TGGGCC ATAG GGCACA TTCCTTCAATACGAA TERM 3542 2462325 - 2462298 - R 95 -8.5 -5.1963 | opp_overlap 2462298 TTGAAGCAATAAAAA TGGGATACACC AAATAA GGCATATCCCA TTATACTTACAAAAA CLI_2305 2462919 - 2462482 - | acetyltransferase CLI_2306 2463775 - 2463047 - | metallo-beta-lactamase family protein TERM 3543 2463418 - 2463430 + g 77 -7.7 -4.04318 | TTGCGCTCTTTTTCT CTTCC TCA GGAAG TTTATCATATATAGA TERM 3544 2463951 - 2463916 - R 100 -16.5 -5.31855 | opp_overlap 2463916 TACCAATAATAAAAA TCGGTGTTAATTATC AATTAA GATAATTAACACCGA TTTTTTATTTATATA TERM 3545 2463916 - 2463951 + r 100 -16.5 -5.76237 | opp_overlap 2463916 TACCAATAATAAAAA TCGGTGTTAATTATC AATTAA GATAATTAACACCGA TTTTTTATTTATATA CLI_2307 2464232 - 2463960 - | hypothetical protein bioD 2465200 - 2464517 - | dithiobiotin synthetase bioB 2466159 - 2465203 - | biotin synthase CLI_2310 2466712 - 2466152 - | BioY family protein TERM 3546 2466808 - 2466772 - R 100 -8.2 -5.42131 | opp_overlap 2466772 TAATCATATAAAAAA GCATTGTCAACTTATT TTTTT AAAAAGTTTACAATGC TTTTTTATTCTTTTT TERM 3547 2466772 - 2466808 + r 100 -8.2 -5.80727 | opp_overlap 2466772 TAATCATATAAAAAA GCATTGTCAACTTATT TTTTT AAAAAGTTTACAATGC TTTTTTATTCTTTTT CLI_2311 2467181 - 2466852 - | hypothetical protein CLI_2312 2467597 - 2467169 - | MarR family transcriptional regulator TERM 3548 2467727 - 2467702 - R 100 -7.7 -5.80951 | opp_overlap 2467702 AGCTAAAATAAAAAA GAGATACTCAA ACTC TTAAGCATCTC TTTAACCTTATTTAA CLI_2313 2468335 - 2467739 - | hypothetical protein TERM 3549 2468195 - 2468210 + g 70 -4 -4.86133 | GTCATCCTTTTTAGT TTCTGT TTTA GCAGAA TTTTTAGTATCTGTA TERM 3550 2469817 - 2469832 + G 72 -7.6 -3.6239 | opp_overlap 2469814 2469813, overlap 2469813 TAATAGTAACATGCA TCTTGC TCAT GCAAGA TTCCTTTATGGCTGT CLI_2314 2468513 - 2470306 + | M24 family metallopeptidase TERM 3551 2470783 - 2470766 - g 72 -4.1 -5.12617 | opp_overlap 2470766 2470768 2470780, overlap 2470768 GAATTATCTAAAAAA GATGCTG CCTA CAGCATA TTCTATATGTTTATA TERM 3552 2470781 - 2470768 - g 72 -6.7 -4.1821 | opp_overlap 2470766 2470768 2470780, overlap 2470766 ATTATCTAAAAAAGA TGCTG CCTA CAGCA TATTCTATATGTTTA CLI_2315 2470337 - 2471734 + | amino acid/peptide transporter TERM 3553 2471809 - 2471777 - T 100 -13 -5.55695 | opp_overlap 2471777 CAATAATACAAAAAA GACTATAATGCTAT TAACT ATAGCACTATAGTC TTTCCTAACTTAAAT TERM 3554 2471777 - 2471809 + T 91 -10.8 -3.79668 | opp_overlap 2471777 CAATAATACAAAAAA GACTATAATGCTAT TAACT ATAGCACTATAGTC TTTCCTAACTTAAAT TERM 3555 2471939 - 2471919 - T 100 -10.5 -5.37043 | opp_overlap 2471919 2471922 ATTCCATACAAAAAA GAACCCTAT TTA ATAGGGCTC TTTTTTTAAGTAAGG TERM 3556 2471919 - 2471939 + T 100 -8.3 -5.47218 | opp_overlap 2471919, overlap 2471922 ATTCCATACAAAAAA GAACCCTAT TTA ATAGGGCTC TTTTTTTAAGTAAGG TERM 3557 2471922 - 2471936 + T 72 -8.6 -3.21573 | opp_overlap 2471919, overlap 2471919 CCATACAAAAAAGAA CCCTAT TTA ATAGGG CTCTTTTTTTAAGTA CLI_2316 2472108 - 2471989 - | hypothetical protein CLI_2317 2472472 - 2472224 - | hypothetical protein TERM 3558 2472717 - 2472743 + r 85 -11.1 -2.85847 | opp_overlap 2472716, overlap 2472702 2472723 TAAGTTTTTCAATAT TTTATAGAGAG CTTGT CTCTCTATAAA TATAATATGGAACTT CLI_2318 2473062 - 2472793 - | hypothetical protein CLI_2319 2473258 - 2473596 + | hypothetical protein TERM 3559 2473648 - 2473607 - T 87 -9.8 -3.44586 | gap 1, opp_overlap 2473610 2473611, overlap 2473609 2473611 ACTAATTTAGTATAA TATAGGACAGCTTAATATA TTTTT TATATTAAGCTGTCC-ATT CTAATATAAAAGATA TERM 3560 2473646 - 2473609 - T 93 -12.4 -3.29161 | gap 1, opp_overlap 2473610 2473611, overlap 2473607 2473611 TAATTTAGTATAATA TAGGACAGCTTAATATA TTTTT TATATTAAGCTGTCC-A TTCTAATATAAAAGA TERM 3561 2473610 - 2473646 + T 100 -14 -3.46602 | opp_overlap 2473609 2473607 2473611, overlap 2473611 AATTTAGTATAATAT AGGACAGCTTAATATA TTTTT TATATTAAGCTGTCCA TTCTAATATAAAAGA TERM 3562 2473611 - 2473645 + T 100 -17.5 -2.67747 | opp_overlap 2473609 2473607 2473611, overlap 2473610 ATTTAGTATAATATA GGACAGCTTAATATA TTTTT TATATTAAGCTGTCC ATTCTAATATAAAAG TERM 3563 2473645 - 2473611 - T 100 -17.5 -3.2059 | opp_overlap 2473611 2473610, overlap 2473609 2473607 ATTTAGTATAATATA GGACAGCTTAATATA TTTTT TATATTAAGCTGTCC ATTCTAATATAAAAG CLI_2320 2474762 - 2473761 - | choloylglycine hydrolase family protein TERM 3564 2474730 - 2474716 - G 74 -8.6 -3.32521 | AGTATATTCCCATAA TGAAGC CCT GCTTCA TAGTGACTACCTTTC TERM 3565 2474898 - 2474869 - R 72 -3.7 -5.27938 | gap 1, opp_overlap 2474871, overlap 2474871 ATTTGTAAATAAAAA TACCGCA-TATTCA TAT TGAATAATACGGTC TAATGTAATTATATA TERM 3566 2474896 - 2474871 - R 70 -6.3 -4.27026 | gap 1, opp_overlap 2474871, overlap 2474869 TTGTAAATAAAAATA CCGCA-TATTCA TAT TGAATAATACGG TCTAATGTAATTATA CLI_2321 2475541 - 2474960 - | hypothetical protein TERM 3567 2475867 - 2475844 - R 100 -12.6 -3.87062 | opp_overlap 2475835 2475832, overlap 2475835 AATTAACAATCTAAA GGATTGGTAT TTAA ATACCAATCC TAGAAAATCATAAAT CLI_2322 2476231 - 2475992 - | hypothetical protein TERM 3568 2476674 - 2476659 - R 100 -9 -5.24989 | opp_overlap 2476661 TTATATATTAAAAAA GAGCTC TTAT GAGCTC TTAAAAAATTCTTAA CLI_2324 2476889 - 2476686 - | hypothetical protein CLI_2325 2477701 - 2478033 + | hypothetical protein TERM 3569 2478050 - 2478079 + F 93 -9.5 -4.51699 | TGAGTATAATATATG GCAATTTTATATG TTTT CATATGAAGTTGC TTTTATAATAATTAT TERM 3570 2478174 - 2478151 - f 100 -12.5 -5.06414 | opp_overlap 2478146 2478145 2478142 2478155 CCTTTTGAATAAAAA GGCACTTGG TTAATT CCAAGTGCC TTCAAGTACTTTTTA CLI_2326 2478372 - 2479355 + | hypothetical protein TERM 3571 2479368 - 2479389 + T 82 -10.1 -2.94888 | opp_overlap 2479368, overlap 2479365 TAAACTTTAGAAAAA CCCCAGGCA TTTC TACCTGGGG TCCTTTGAATAACTT TERM 3572 2479389 - 2479368 - T 100 -12.3 -4.89393 | opp_overlap 2479365 2479368 TAAACTTTAGAAAAA CCCCAGGCA TTTC TACCTGGGG TCCTTTGAATAACTT CLI_2327 2479617 - 2479450 - | hypothetical protein TERM 3573 2479883 - 2479855 - R 100 -11.2 -5.49568 | AAGGGAAAATAAAAA GCTGTTGACAAA ATATA TTTATCAACAGC CTAAGATGACTTCTT CLI_2328 2480325 - 2479918 - | hypothetical protein TERM 3574 2480398 - 2480361 - R 89 -10.1 -3.54951 | opp_overlap 2480360 2480363 2480366, overlap 2480363 2480366 TATTTGACTATACAA TAGAAGCACATACTA TTATTACT TAGTATGTGCTTCTT AATTATTTTATTTAG TERM 3575 2480396 - 2480363 - R 95 -12.7 -3.34902 | opp_overlap 2480360 2480363 2480366, overlap 2480361 2480366 TTTGACTATACAATA GAAGCACATACTA TTATTACT TAGTATGTGCTTC TTAATTATTTTATTT TERM 3576 2480363 - 2480396 + r 95 -12.7 -3.75844 | opp_overlap 2480363 2480361 2480366, overlap 2480360 2480366 TTTGACTATACAATA GAAGCACATACTA TTATTACT TAGTATGTGCTTC TTAATTATTTTATTT TERM 3577 2480393 - 2480366 - R 76 -8.6 -3.80945 | opp_overlap 2480363 2480360 2480366, overlap 2480363 2480361 GACTATACAATAGAA GCACATACTA TTATTACT TAGTATGTGC TTCTTAATTATTTTA TERM 3578 2480366 - 2480393 + r 78 -8.6 -3.95647 | opp_overlap 2480366 2480363 2480361, overlap 2480363 2480360 GACTATACAATAGAA GCACATACTA TTATTACT TAGTATGTGC TTCTTAATTATTTTA CLI_2329 2480999 - 2480406 - | putative lipoprotein msrB 2481621 - 2481172 - | methionine sulfoxide reductase B TERM 3579 2481347 - 2481359 + g 74 -6.3 -4.43501 | CTTACTTCTGTTCTA GTCAT TCC ATGAC TTTTATCAATAGATT TERM 3580 2481785 - 2481750 - R 85 -6.2 -5.46129 | opp_overlap 2481758, overlap 2481757 2481758 TAACAAATTAAAAAA TTATAAAGCCCCATGT ATTT ACATGGGGTTTTTGAA CAGTCTGAATAAAGA TERM 3581 2481778 - 2481757 - R 84 -8.7 -4.3179 | opp_overlap 2481758, overlap 2481750 2481758 TTAAAAAATTATAAA GCCCCATGT ATTT ACATGGGGT TTTTGAACAGTCTGA TERM 3582 2481758 - 2481777 + r 100 -12.2 -4.59109 | opp_overlap 2481757 2481750 2481758 TAAAAAATTATAAAG CCCCATGT ATTT ACATGGGG TTTTTGAACAGTCTG TERM 3583 2481777 - 2481758 - R 93 -12.2 -3.17447 | opp_overlap 2481758, overlap 2481757 2481750 TAAAAAATTATAAAG CCCCATGT ATTT ACATGGGG TTTTTGAACAGTCTG TERM 3584 2481827 - 2481811 - R 73 -6.7 -4.29977 | opp_overlap 2481811 2481809 AAAGAACTTAATAAA CAATAAA TTT TTTATTG TGTTTTTAATTAAAT TERM 3585 2481811 - 2481827 + r 71 -6.7 -4.06004 | opp_overlap 2481811, overlap 2481809 AAAGAACTTAATAAA CAATAAA TTT TTTATTG TGTTTTTAATTAAAT sodF 2482449 - 2481853 - | Mn/Fe superoxide dismutase CLI_2332 2484327 - 2482570 - | ABC transporter ATP-binding protein TERM 3586 2484433 - 2484398 - R 78 -9.2 -2.93975 | opp_overlap 2484401, overlap 2484397 2484395 AGCCTCTAAAAATAC TTATAGGGATTAGTTA AAAT TAACTAATCCCTATTT TAATCTGCTGAAAGT TERM 3587 2484401 - 2484430 + r 100 -15.3 -4.371 | opp_overlap 2484398 2484397 2484395 CTCTAAAAATACTTA TAGGGATTAGTTA AAAT TAACTAATCCCTA TTTTAATCTGCTGAA CLI_2333 2485566 - 2484607 - | AraC family transcriptional regulator CLI_2334 2485925 - 2485812 - | hypothetical protein TERM 3588 2485893 - 2485844 - G 76 -8.7 -3.48276 | gap 1, overlap 2485847 2485849 2485858 TTTCTGTGTACATAA CAATACCCCCAAAAGTAGCTT-GA TTA TCTATGCTACAATTAGGGGCATTG TTACAATATGAGATT CLI_2335 2486806 - 2486072 - | hypothetical protein CLI_2336 2487588 - 2486842 - | hypothetical protein CLI_2337 2488501 - 2487581 - | antibiotic ABC transporter, ATP-binding protein TERM 3589 2488577 - 2488525 - R 71 -6.6 -4.15044 | gap 1, opp_overlap 2488532, overlap 2488527 2488528 CTCCCTTTTAATAAA TAGTTAAGGATTACCCCTCATCCAT ATTT ATAG-TAAGGGATAATCCTTAAATT CAAGCTACGTAATTA TERM 3590 2488575 - 2488527 - R 84 -9.2 -3.6761 | gap 1, opp_overlap 2488532, overlap 2488525 2488528 CCCTTTTAATAAATA GTTAAGGATTACCCCTCATCCAT ATTT ATAG-TAAGGGATAATCCTTAAA TTCAAGCTACGTAAT TERM 3591 2488574 - 2488528 - R 91 -12.7 -2.80244 | gap 1, opp_overlap 2488532, overlap 2488527 2488525 CCTTTTAATAAATAG TTAAGGATTACCCCTCATCCAT ATTT ATAG-TAAGGGATAATCCTTAA ATTCAAGCTACGTAA CLI_2338 2489614 - 2488703 - | sensor histidine kinase CLI_2339 2490318 - 2489614 - | DNA-binding response regulator CLI_2340 2490673 - 2491434 + | exonuclease family protein TERM 3592 2491451 - 2491429 - T 83 -7.8 -4.70921 | opp_overlap 2491429 GATAAGATAAAGAAA GAGTAGATAA ATT TTTTCTACTC TTTTTAAATTATTAT TERM 3593 2491429 - 2491451 + T 86 -7.8 -4.82333 | opp_overlap 2491429 GATAAGATAAAGAAA GAGTAGATAA ATT TTTTCTACTC TTTTTAAATTATTAT CLI_2341 2491770 - 2491468 - | stress responsive alpha-beta barrel domain-containing protein CLI_2342 2492689 - 2491853 - | metallo-beta-lactamase family protein TERM 3594 2492947 - 2492924 - R 70 -7.6 -3.37493 | overlap 2492927 TTTTTAATATACTAA TAAGAAAAGA GATT TCTTTTCCTA GCGCAAGTTTTTGCA TERM 3595 2492944 - 2492927 - R 70 -7.1 -3.82205 | overlap 2492924 TTAATATACTAATAA GAAAAGA GATT TCTTTTC CTAGCGCAAGTTTTT def-1 2493443 - 2492991 - | peptide deformylase CLI_2344 2493680 - 2493444 - | putative DNA-binding protein CLI_2345 2494741 - 2493920 - | transglutaminase TERM 3596 2494436 - 2494448 + g 74 -7.7 -3.83768 | AAAGATATCCTTTAT GGCAT CAG ATGCC TTTACATGTTCTTTT CLI_2346 2495733 - 2494738 - | hypothetical protein TERM 3597 2494983 - 2494999 + g 82 -7.3 -4.8143 | opp_overlap 2494983 TTGCTTCTAAAACTA CCCTATA AAT TATGGGG TTTTTGACTTGTTGA TERM 3598 2495846 - 2495863 + r 70 -7.1 -3.66178 | opp_overlap 2495846 AACTTACAAAACAAA GGTATTT ATTT AAATACC TTTCAAATTAAAGCA TERM 3599 2495863 - 2495846 - R 81 -7.1 -4.79683 | opp_overlap 2495846 AACTTACAAAACAAA GGTATTT ATTT AAATACC TTTCAAATTAAAGCA TERM 3600 2496400 - 2496362 - R 100 -20 -4.66163 | opp_overlap 2496364, overlap 2496349 ATTGTGACGTAAAAA CACCACACTATTCAAATT TAA AATTTAAATAGTGTGGTG TTCAAGTAGATTATT TERM 3601 2496364 - 2496398 + r 100 -14.6 -3.06969 | opp_overlap 2496349 2496362 TGTGACGTAAAAACA CCACACTATTCAAATT TAA AATTTAAATAGTGTGG TGTTCAAGTAGATTA CLI_2347 2496650 - 2496537 - | hypothetical protein TERM 3602 2497850 - 2497815 - R 100 -14.2 -4.10144 | opp_overlap 2497812 2497821 2497826, overlap 2497816 2497818 TTAATATAATAATAA GCAGTAATCAAGAGTG CGTC CACTCTTGACTACTGT AAATGTATAAAGCAT TERM 3603 2497849 - 2497816 - R 100 -17.7 -3.05002 | opp_overlap 2497812 2497821 2497826, overlap 2497815 2497818 TAATATAATAATAAG CAGTAATCAAGAGTG CGTC CACTCTTGACTACTG TAAATGTATAAAGCA TERM 3604 2497847 - 2497818 - R 100 -14.5 -3.06098 | opp_overlap 2497812 2497821 2497826, overlap 2497816 2497815 ATATAATAATAAGCA GTAATCAAGAGTG CGTC CACTCTTGACTAC TGTAAATGTATAAAG CLI_2349 2498326 - 2497904 - | flavodoxin gapN 2499811 - 2498348 - | NADP-dependent glyceraldehyde-3-phosphate dehydrogenase TERM 3605 2498533 - 2498543 + g 70 -5.4 -4.52589 | opp_overlap 2498533 CTGATAAATAAAAAG CATC ATT GATG TTTTCTGTAAACACC CLI_2351 2500615 - 2499842 - | putative flavohemoprotein TERM 3606 2500930 - 2500897 - R 100 -10.6 -5.12474 | opp_overlap 2500897 2500901 TAGAATATATAAAAA TAAATCCTAACTAC AACTAA GTAGTTAGAATTTA TTGGTTAGTTTATAT TERM 3607 2500897 - 2500930 + r 75 -8.4 -3.5292 | opp_overlap 2500897, overlap 2500901 TAGAATATATAAAAA TAAATCCTAACTAC AACTAA GTAGTTAGAATTTA TTGGTTAGTTTATAT TERM 3608 2502413 - 2502355 - R 100 -8.8 -5.71712 | gap 1, opp_overlap 2502360 2502373 2502383, overlap 2502357 2502404 CTCTACATAAAAAAA CATAATAGCTAATCATAAGTTAACTCT TTTAAT AGAATTAACTTATAATCAACTATTAT- GGTAGTTGGTAGAAA TERM 3609 2502412 - 2502357 - R 100 -13.9 -4.50122 | opp_overlap 2502360 2502373 2502383, overlap 2502355 2502404 CTACATAAAAAAACA TAATAGCTAATCATAAGTTAACTCT TTTAAT AGAATTAACTTATAATCAACTATTA TGGTAGTTGGTAGAA TERM 3610 2502466 - 2502488 + r 83 -8 -4.63184 | opp_overlap 2502472 TATAAGTCATGTTTT TAATTATATA CAC TATATAATTA TTTTTCAACTGAATT CLI_2353 2503166 - 2502654 - | hypothetical protein CLI_2358 2505274 - 2506647 + | hypothetical protein CLI_2359 2507154 - 2506849 - | hypothetical protein CLI_2360 2507671 - 2507147 - | hypothetical protein CLI_2361 2508104 - 2507652 - | hypothetical protein CLI_2362 2508613 - 2508101 - | ECF subfamily RNA polymerase sigma factor TERM 3611 2508240 - 2508228 - G 78 -6.3 -4.84761 | overlap 2508231 ATATCTTTACAAAAA TAGCT TAT AGCTA CAGTTCTATAAGGCT CLI_2363 2510172 - 2509066 - | spore germination protein CLI_2364 2510902 - 2510696 - | hypothetical protein CLI_2365 2512462 - 2511110 - | polyA polymerase family protein CLI_2366 2512627 - 2512487 - | hypothetical protein TERM 3612 2512990 - 2513019 + r 70 -7.3 -3.77722 | ATCCATGTTGATGTA GTTATATACAGAA AAAT TGCTGTGTATAAC TTATTAATACTTCAC TERM 3613 2513130 - 2513171 + r 79 -8.2 -4.16121 | opp_overlap 2513132 2513136, overlap 2513132 2513136 ATAGCCATAAATTTA AATAAAGCCAGGTAGG TCTTTTACTC CCTATCTGGCTTTATC TTTATAATATTTTTA TERM 3614 2513169 - 2513132 - R 78 -8.6 -3.89617 | opp_overlap 2513132 2513130 2513136, overlap 2513136 AGCCATAAATTTAAA TAAAGCCAGGTAGG TCTTTTACTC CCTATCTGGCTTTA TCTTTATAATATTTT TERM 3615 2513132 - 2513169 + r 91 -10.8 -3.64801 | opp_overlap 2513132 2513136, overlap 2513130 2513136 AGCCATAAATTTAAA TAAAGCCAGGTAGG TCTTTTACTC CCTATCTGGCTTTA TCTTTATAATATTTT TERM 3616 2513136 - 2513165 + r 77 -7.2 -4.41609 | opp_overlap 2513136 2513132, overlap 2513132 2513130 ATAAATTTAAATAAA GCCAGGTAGG TCTTTTACTC CCTATCTGGC TTTATCTTTATAATA CLI_2367 2513378 - 2513184 - | small, acid-soluble spore protein CLI_2368 2514376 - 2513918 - | hypothetical protein CLI_2369 2514655 - 2514404 - | hypothetical protein TERM 3617 2514758 - 2514773 + r 79 -4.8 -5.53288 | opp_overlap 2514758 TATATTGTCTGCAAA GTATAA CTAA TTATAC TTTTTTTAAATTAAA CLI_2370 2515161 - 2515009 - | hypothetical protein CLI_2371 2515301 - 2515750 + | hypothetical protein TERM 3618 2516043 - 2516099 + T 82 -9.8 -3.09516 | opp_overlap 2516050 2516053, overlap 2516032 AAGTTGGCCAGCCTG GCACATATAATTTGTAGCAGCTAT GAAGGATGA ATAGCTAGTACAAATTATACGTGC TTGGCTAGTCCAAGG CLI_2372 2517671 - 2516421 - | sensor histidine kinase CLI_2373 2518344 - 2517664 - | DNA-binding response regulator CLI_2374 2518876 - 2518337 - | UBA/TS-N domain-containing protein TERM 3619 2518485 - 2518469 - G 73 -3.8 -5.21709 | TTCTATATCAAAAAA TAATGA AGTAA TCATTA AAGGTATAATCATCC TERM 3620 2519016 - 2518972 - R 82 -10.2 -3.08133 | gap 1, opp_overlap 2518982 TATCCAGGGACGTAA CCACTCT-TTACTCCCATTTT GAAG AAGATGGGAGTATTAGAGCGG GTAGTCATCGGATAA TERM 3621 2518982 - 2519005 + r 85 -10.4 -3.02144 | opp_overlap 2518972 CGTAACCACTCTTTA CTCCCATTTT GAAG AAGATGGGAG TATTAGAGCGGGTAG TERM 3622 2519142 - 2519109 - R 100 -15.7 -4.69622 | opp_overlap 2519109 2519113, overlap 2519100 2519113 ACATAACTTTAAAAA TAAAGAGATTTTGAA TATT TTCAAAATCTCTTTA TTATACTATATATTA TERM 3623 2519109 - 2519142 + r 100 -15.7 -3.52307 | opp_overlap 2519100 2519109 2519113, overlap 2519113 ACATAACTTTAAAAA TAAAGAGATTTTGAA TATT TTCAAAATCTCTTTA TTATACTATATATTA TERM 3624 2519113 - 2519138 + r 100 -12.1 -4.38273 | opp_overlap 2519113 2519109, overlap 2519109 AACTTTAAAAATAAA GAGATTTTGAA TATT TTCAAAATCTC TTTATTATACTATAT TERM 3625 2519138 - 2519113 - R 100 -12.1 -4.88293 | opp_overlap 2519109 2519113, overlap 2519109 AACTTTAAAAATAAA GAGATTTTGAA TATT TTCAAAATCTC TTTATTATACTATAT CLI_2375 2519697 - 2519155 - | hypothetical protein CLI_2376 2520865 - 2520056 - | hypothetical protein TERM 3626 2520499 - 2520515 + g 72 -4.5 -4.98436 | overlap 2520500 TATTCCGCCTTGTAT TTTTGAT TTT ATCAAAG TTTTTATAGTATTGA CLI_2377 2521166 - 2521426 + | hypothetical protein CLI_2378 2521423 - 2521860 + | putative DNA-binding protein TERM 3627 2521873 - 2521857 - T 80 -3.1 -5.92399 | overlap 2521861 TAATAAAATAAAAAA TTAATTA ATC CAATTAA CAACTAAGGAGCCTT TERM 3628 2521881 - 2521898 + T 76 -8.4 -3.69497 | opp_overlap 2521874 2521881, overlap 2521879 CCAATTAACAACTAA GGAGCC TTAATT GGCTCC TGTTTATAATTTTAA TERM 3629 2521898 - 2521881 - T 75 -8.4 -3.58329 | opp_overlap 2521881 2521879, overlap 2521874 CCAATTAACAACTAA GGAGCC TTAATT GGCTCC TGTTTATAATTTTAA CLI_2379 2523047 - 2522013 - | hypothetical protein CLI_2380 2523463 - 2523933 + | hypothetical protein TERM 3630 2524063 - 2524014 - T 100 -20.5 -4.79352 | opp_overlap 2524014 2524024 TGATTGATAATAAAA TACTACAAAAGACACCTATCC TCCAAATG GGATAGATGTCTTTTGTAGTA TTTAAAATTTTATGT TERM 3631 2524014 - 2524063 + T 100 -19 -3.79203 | opp_overlap 2524014, overlap 2524024 TGATTGATAATAAAA TACTACAAAAGACACCTATCCT CCAAAT GGGATAGATGTCTTTTGTAGTA TTTAAAATTTTATGT TERM 3632 2524024 - 2524053 + T 79 -7.2 -4.58303 | opp_overlap 2524014, overlap 2524014 TAAAATACTACAAAA GACACCTATCCT CCAAAT GGGATAGATGTC TTTTGTAGTATTTAA CLI_2381 2524868 - 2524431 - | hypothetical protein TERM 3633 2524988 - 2525013 + r 83 -7.6 -4.6526 | opp_overlap 2524991 2524994, overlap 2524991 2525010 ATTTAAATAATTTAG AAAGAACCCC TTTATT GGGGTTCTTC TTTTTAGAGGTTTAT TERM 3634 2525010 - 2524991 - R 86 -9.3 -4.0386 | opp_overlap 2524991 2524988, overlap 2524994 TAAATAATTTAGAAA GAACCCC TTTATT GGGGTTC TTCTTTTTAGAGGTT TERM 3635 2524991 - 2525010 + r 93 -9.3 -4.42235 | opp_overlap 2524991 2524994, overlap 2524988 TAAATAATTTAGAAA GAACCCC TTTATT GGGGTTC TTCTTTTTAGAGGTT TERM 3636 2525078 - 2525052 - R 73 -7.6 -3.74012 | opp_overlap 2525050 2525052 TATAGAAAATTATAA TATTTAATATTC CAT AAATATTAAATA TCTTCTTTACACACT CLI_2382 2525859 - 2525101 - | nlpC/P60 family protein TERM 3637 2526178 - 2526146 - R 80 -9.4 -3.15544 | opp_overlap 2526146 TGGGATTTTGAGCAA CCTGAACTGAATAA AATAA TTATTCAGTTCAAA ATTTAAAGGTAACAT CLI_2383 2526515 - 2526399 - | hypothetical protein TERM 3638 2526824 - 2526844 + H 73 -5.4 -4.90778 | opp_overlap 2526824 2526819, overlap 2526819 AATTCTACAACAAAA GAACCCTG TTTAT TGGGGTTC TTTTCTTTAAGTAAG TERM 3639 2527772 - 2527758 - H 73 -4.4 -5.10461 | opp_overlap 2527758 2527763 TTTATGTAACAAAAA TATTTT TAA AAAATA TTTTAATAGTATGAG TERM 3640 2527942 - 2527990 + H 80 -9.3 -3.23715 | opp_overlap 2527929 2527942 2527955, overlap 2527940 2527944 2527955 TACATCTAAAATTGA TGCAAATAAAAAACGTACTTA TCCCGAC TAAGTACGTTTTTTATTTATG TATTATAAGCATTAT TERM 3641 2527944 - 2527988 + H 93 -11.9 -3.1789 | opp_overlap 2527942 2527955, overlap 2527942 2527940 2527955 CATCTAAAATTGATG CAAATAAAAAACGTACTTA TCCCGAC TAAGTACGTTTTTTATTTA TGTATTATAAGCATT TERM 3642 2527977 - 2527955 - H 90 -6.4 -5.65927 | opp_overlap 2527955 2527944 2527942 2527940, overlap 2527942 GATGCAAATAAAAAA CGTACTTA TCCCGAC TAAGTACG TTTTTTATTTATGTA TERM 3643 2527955 - 2527977 + H 90 -6.4 -5.76237 | opp_overlap 2527942 2527955, overlap 2527944 2527942 2527940 GATGCAAATAAAAAA CGTACTTA TCCCGAC TAAGTACG TTTTTTATTTATGTA TERM 3644 2528439 - 2528450 + G 70 -5.8 -4.2461 | opp_overlap 2528428 AAACGGCATCCGCGA GCCA GATA TGGC TTTATTAGTAAAAAT TERM 3645 2528531 - 2528514 - g 70 -5.7 -4.30719 | overlap 2528527 TTTGTGTAGAACAAA TAAAATG GAAC CATTTTA TAAAAATAATAAAAA CLI_2385 2528317 - 2528559 + | DNA-binding protein TERM 3646 2528602 - 2528646 + F 75 -9.7 -2.69073 | opp_overlap 2528639, overlap 2528599 2528598 AATCACATATTTTTA TTTTACAGTAATTATAGATTT TCG ACATCTGTAATTACTATAAAA TCACTTATTATAAAT TERM 3647 2528842 - 2528820 - g 95 -8.5 -5.52079 | opp_overlap 2528820 ATAGTAAAACAAAAA CTCTAAAGG TTAAC CCTCTAGAG TTTTTTATATTATAA TERM 3648 2528820 - 2528842 + G 90 -6.3 -5.5208 | opp_overlap 2528820 ATAGTAAAACAAAAA CTCTAAAGG TTAAC CCTCTAGAG TTTTTTATATTATAA CLI_2386 2528744 - 2528857 + | hypothetical protein CLI_2387 2529378 - 2528977 - | resolvase domain-containing protein CLI_2388 2529668 - 2529423 - | hypothetical protein CLI_2389 2529865 - 2529674 - | hypothetical protein TERM 3649 2530027 - 2530010 - R 93 -11.3 -3.43203 | opp_overlap 2530009 2530007 2530005 GTATTATAAGAGTAA GGGAGGA GTTT TCCTCCC CTGTGTTCATAACAA TERM 3650 2530093 - 2530124 + r 100 -9 -5.62552 | gap 1 TTATTTTTACTAGTA GCTTGATAA-CTATT CCC AGTAGCTTATCAAGC TTTTTTAATTTTTTT TERM 3651 2530289 - 2530261 - R 90 -7.5 -5.06414 | opp_overlap 2530264, overlap 2530264 TTTCCCCAATAAAAA GAAGGTACTTCCA TTA CAGAAGTACCTTT AAAATTAATATCTTA TERM 3652 2530264 - 2530286 + r 73 -7.8 -3.6869 | opp_overlap 2530261 2530264 CCCCAATAAAAAGAA GGTACTTC CATTACA GAAGTACC TTTAAAATTAATATC TERM 3653 2530286 - 2530264 - R 93 -9.2 -4.63592 | opp_overlap 2530264, overlap 2530261 CCCCAATAAAAAGAA GGTACTTCCA TTA CAGAAGTACC TTTAAAATTAATATC CLI_2390 2531061 - 2530294 - | N-acetylmuramoyl-L-alanine amidase TERM 3654 2530447 - 2530462 + g 76 -7.6 -3.99062 | overlap 2530460 AGCTTCTCTTATATT TACACC GCTT GGTGTA TTTATAGTACCTGTT TERM 3655 2531117 - 2531097 - R 84 -4.7 -5.64873 | opp_overlap 2531097 2531100 TTTAATAATAAAAAA GAACAGG CATTAAT CCTGCTC TTTACTTTCTTTTAC CLI_2391 2531321 - 2531106 - | hypothetical protein TERM 3656 2531250 - 2531238 - G 72 -4.9 -4.90471 | overlap 2531231 ACTTAAAATACAAAA TACTA TTG TAGTA AGTAATGCTATAATC CLI_2392 2531592 - 2531338 - | hypothetical protein CLI_2393 2532368 - 2531613 - | hypothetical protein TERM 3657 2532484 - 2532472 - R 79 -4.8 -5.54338 | TAAGCAAAATAAAAA GACC TATAT GGTC CCTACTTTGCCTTTA CLI_2394 2532712 - 2532530 - | hypothetical protein CLI_2395 2533055 - 2532714 - | hypothetical protein CLI_2396 2534248 - 2533067 - | tail fiber protein H CLI_2397 2534878 - 2534252 - | hypothetical protein CLI_2398 2535953 - 2534859 - | putative baseplate J-like protein TERM 3658 2535614 - 2535592 - G 77 -7.8 -4.05033 | overlap 2535593 2535595 TGCATTTTATATAAA CCAGTAGAAA TTT TTTCTACTGC AATAAAATTAAAATC TERM 3659 2535613 - 2535593 - G 87 -11.3 -3.02698 | overlap 2535592 2535595 GCATTTTATATAAAC CAGTAGAAA TTT TTTCTACTG CAATAAAATTAAAAT TERM 3660 2535611 - 2535595 - G 70 -8.1 -3.06686 | overlap 2535593 2535592 ATTTTATATAAACCA GTAGAAA TTT TTTCTAC TGCAATAAAATTAAA CLI_2399 2536361 - 2535954 - | hypothetical protein CLI_2400 2536708 - 2536364 - | hypothetical protein CLI_2401 2537685 - 2536711 - | hypothetical protein CLI_2402 2538378 - 2537701 - | lysM domain-containing protein TERM 3661 2538173 - 2538148 - G 81 -7.5 -4.66537 | opp_overlap 2538148 CTTTGCAATATAAAA GCTCGGTTCAA ATAA TTGCTCCGAGC TTACATAAGGACCTT CLI_2403 2540537 - 2538378 - | putative tail length tape measure protein CLI_2404 2541356 - 2540595 - | hypothetical protein TERM 3662 2540684 - 2540698 + g 76 -6.4 -4.5394 | TTAATTTTATTAATT CGTCTG CCA CAGATG TTTTGGTATTTATAT TERM 3663 2541136 - 2541161 + g 95 -7 -5.80727 | TAAGGTCCTATTTTT TTAGTAGTTG TAAAAT CAGCTACTAA TTTTTTATTATTTTT TERM 3664 2541272 - 2541256 - G 81 -8.1 -4.13591 | overlap 2541248 TTAATACTACACAAA TGTAAAC ACT GTTTACA GATAAATCCGCTAGA CLI_2405 2542006 - 2541593 - | hypothetical protein CLI_2406 2542488 - 2542024 - | core tail protein CLI_2407 2543802 - 2542492 - | hypothetical protein CLI_2408 2543974 - 2543804 - | hypothetical protein CLI_2409 2544353 - 2543964 - | hypothetical protein TERM 3665 2544305 - 2544286 - G 81 -2.8 -5.80364 | opp_overlap 2544286 2544281 ACCTTAATAAAAAAA CAAGGCTC CTCA AAGTCTTG TTTTATTTCTTCTCC TERM 3666 2544286 - 2544305 + g 72 -4.3 -5.14682 | opp_overlap 2544286, overlap 2544281 ACCTTAATAAAAAAA CAAGGCT CCTCAA AGTCTTG TTTTATTTCTTCTCC CLI_2410 2544568 - 2544404 - | hypothetical protein CLI_2411 2545073 - 2544582 - | hypothetical protein CLI_2412 2545456 - 2545073 - | hypothetical protein CLI_2413 2545802 - 2545458 - | hypothetical protein TERM 3667 2545763 - 2545741 - G 88 -7.8 -4.87893 | AATTGCAATGAAAAA TCCTTGGA GTCATTA TCCAAGGA TATACCTAAAAGTTT CLI_2414 2546781 - 2545816 - | phage coat protein CLI_2415 2547406 - 2546801 - | phage minor structural protein GP20 TERM 3668 2546949 - 2546962 + g 74 -3.1 -5.34365 | TCTGTAGGTTCTACT CCTGA AAAC TTAGG TTTTTGTTCTTCTGC CLI_2416 2547690 - 2547427 - | hypothetical protein CLI_2417 2548075 - 2547707 - | hypothetical protein CLI_2418 2548300 - 2548106 - | hypothetical protein CLI_2419 2549348 - 2548317 - | SPP1 family phage head morphogenesis protein CLI_2420 2550780 - 2549329 - | SPP1 family phage portal protein CLI_2421 2552202 - 2550793 - | hypothetical protein TERM 3669 2552166 - 2552146 - G 95 -6.2 -5.80364 | opp_overlap 2552144 2552146 ATTGCAATAAAAAAA GAACTTAC GTCTT GCAAGTTC TATCTTTGCTCCTAA CLI_2422 2552782 - 2552195 - | putative phage terminase, small subunit TERM 3670 2552838 - 2552813 - R 75 -4 -5.59879 | opp_overlap 2552814, overlap 2552814 TATAAATATAAAAAA GGCACCTAGA AATTAA TCTAAGTGCT TTTAGTACATAAACA TERM 3671 2552837 - 2552814 - R 75 -7.5 -3.93487 | opp_overlap 2552814, overlap 2552813 ATAAATATAAAAAAG GCACCTAGA AATTAA TCTAAGTGC TTTTAGTACATAAAC CLI_2423 2553556 - 2553005 - | hypothetical protein CLI_2424 2553920 - 2553543 - | hypothetical protein CLI_2425 2555293 - 2553929 - | SNF2 domain-containing protein TERM 3672 2555032 - 2555046 + g 82 -7.2 -4.8083 | CCTCTCTTCTCTGTT TCTTAG TTC CTAAGA TTTTTGATACTCTTA CLI_2426 2555463 - 2555296 - | hypothetical protein CLI_2427 2555737 - 2555456 - | VRR-NUC domain-containing protein CLI_2428 2556032 - 2555892 - | hypothetical protein CLI_2429 2558421 - 2555998 - | putative virulence-associated protein E TERM 3673 2556382 - 2556394 + gr 71 -4.9 -4.7078 | TTCATTATTTAAATT TAAAG GTT CTTTA TTTTTCCATAGTTCC CLI_2430 2559493 - 2558468 - | hypothetical protein CLI_2431 2559821 - 2559537 - | hypothetical protein CLI_2432 2560090 - 2559860 - | hypothetical protein TERM 3674 2560042 - 2560054 + g 72 -2.7 -5.4387 | overlap 2560043 2560051 ATAAAATCATAAACT TTTCT TTA AGAAG TTTTTTAATTTCTGT CLI_2433 2561569 - 2560139 - | C-5 cytosine-specific DNA methylase polA-1 2563587 - 2561611 - | DNA-directed DNA polymerase I CLI_2435 2563787 - 2563608 - | hypothetical protein CLI_2436 2563988 - 2563818 - | hypothetical protein TERM 3675 2564038 - 2564065 + r 73 -7.9 -3.6692 | gap 1, opp_overlap 2564041, overlap 2564035 2564039 2564041 GAATTATTGTATAAT TA-AGGGTGAGT TTAGT ACTCACCCTATA TGTTTTAGCCTAAAA TERM 3676 2564039 - 2564063 + r 74 -8.6 -3.41366 | opp_overlap 2564041, overlap 2564038 2564035 2564041 AATTATTGTATAATT AAGGGTGAGT TTAGT ACTCACCCTA TATGTTTTAGCCTAA TERM 3677 2564041 - 2564061 + r 90 -11.2 -3.27181 | opp_overlap 2564041, overlap 2564039 2564038 2564035 TTATTGTATAATTAA GGGTGAGT TTAGT ACTCACCC TATATGTTTTAGCCT TERM 3678 2564061 - 2564041 - R 93 -11.2 -3.45118 | opp_overlap 2564039 2564038 2564035 2564041 TTATTGTATAATTAA GGGTGAGT TTAGT ACTCACCC TATATGTTTTAGCCT CLI_2437 2564624 - 2564070 - | hypothetical protein TERM 3679 2564725 - 2564712 - R 71 -6.7 -4.18018 | opp_overlap 2564711 2564712 CCTCTTTATTTAAAA TCTGC TTCA GCAGA ATTATAAACTGGTCT CLI_2438 2565847 - 2564702 - | hypothetical protein CLI_2439 2566011 - 2565847 - | hypothetical protein CLI_2440 2566457 - 2566011 - | hypothetical protein CLI_2441 2566757 - 2566503 - | hypothetical protein CLI_2442 2567008 - 2566757 - | hypothetical protein TERM 3680 2567066 - 2567081 + r 75 -6.8 -4.47611 | TTAATTAAATTTATT GGTGGC TTAA GCCATC TCTTTTTTTATGCTG CLI_2443 2567623 - 2567072 - | sigma-70 family RNA polymerase sigma factor CLI_2444 2567986 - 2567828 - | hypothetical protein CLI_2445 2568834 - 2567983 - | hypothetical protein TERM 3681 2568583 - 2568618 + g 88 -8.6 -4.38092 | gap 1, opp_overlap 2568588, overlap 2568580 TAATTCACTTGCATA TTTAAGGCT-ACTATCT TTA AGATAGTTGGCTTTAAA TTCTTTTAGTTCTTC CLI_2446 2569039 - 2568896 - | hypothetical protein CLI_2447 2569330 - 2569127 - | DNA-binding protein CLI_2448 2569622 - 2569999 + | DNA-binding protein TERM 3682 2571313 - 2571303 - g 71 -3.2 -5.21683 | ATCTAAAAAAATAAA CAAC CTA GCTG ATGAAAATTCAAGAT CLI_2449 2570011 - 2571561 + | resolvase family protein gidA-1 2571686 - 2572831 + | tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA TERM 3683 2572839 - 2572858 + T 89 -9.3 -4.32233 | opp_overlap 2572836 2572839 TGGTATAAAAATTTA GGAGCCA AGATTA TGGCTCC TTTTAAAATTTTTAT TERM 3684 2572858 - 2572839 - T 76 -9.3 -2.88667 | opp_overlap 2572839, overlap 2572836 TGGTATAAAAATTTA GGAGCCA AGATTA TGGCTCC TTTTAAAATTTTTAT purB 2574312 - 2572882 - | adenylosuccinate lyase TERM 3685 2573919 - 2573933 + g 72 -4.4 -5.08731 | ACTTTTTCAAATTAT TTATAA CAT TTATAA TTTTCTTCTTTATTA CLI_2452 2574550 - 2574771 + | hypothetical protein TERM 3686 2574790 - 2574774 - T 83 -6.5 -5.15682 | opp_overlap 2574774 AAAACATAAATAAAA GGCTCCC CAA AAGAGCC CTTAATTTTTATTCT ptsH 2575056 - 2574799 - | phosphocarrier protein HPr aspB-3 2576360 - 2575167 - | aspartate aminotransferase CLI_2455 2576861 - 2576505 - | hypothetical protein TERM 3687 2576712 - 2576725 + g 74 -6.7 -4.23988 | ATAGGATATTATACC TGCCA TTAC TGGCA TATTTTTTAATATAG CLI_2456 2578141 - 2576858 - | hypothetical protein TERM 3688 2577281 - 2577294 + g 86 -5.3 -5.61277 | TATCCATTCTTTAGC TGCTT TATT AAGCA TTTTATTTTTTTGTG TERM 3689 2577612 - 2577602 - G 74 -3.2 -5.35721 | ATATAATAAGAAAAA TGGC TTT ACCA TGGTGGTCGCTCCTA TERM 3690 2577646 - 2577681 + g 73 -8.7 -3.21416 | opp_overlap 2577643 2577646 ATACTCCTAAAATTA CATATTTATATTTTA TATCAC TAAAGTATAAATATG TTAATAATAAAAGTA TERM 3691 2578066 - 2578082 + g 72 -5.3 -4.75288 | opp_overlap 2578066 GCATAGATAAACCTA TTATTAT TTT ATAATAA TTTGTTTTACTATAA CLI_2457 2579026 - 2578160 - | phosphoribose diphosphate:decaprenyl-phosphate phosphoribosyltransferase TERM 3692 2578569 - 2578541 - G 72 -4.6 -4.9792 | opp_overlap 2578564, overlap 2578544 TATGGTACATAAAAA CAACCAAGGT GATACAGAA ACCTTGGTAG CTAAACTGCCGCTTT TERM 3693 2578777 - 2578805 + g 74 -3.2 -5.45802 | gap 1, opp_overlap 2578783, overlap 2578779 2578782 2578783 TTATAGCTGTAGATT TAGATACTCTTCC ACTT GGGAGAG-GTCTG TTTTTCTTTTCAGGA TERM 3694 2578889 - 2578910 + g 71 -3.2 -5.2422 | opp_overlap 2578889 2578884, overlap 2578903 CGAAGTTAAACAAAA TAATATAA ATGTTA TTATATTA TTTTTTAATATGATT TERM 3695 2579058 - 2579084 + r 71 -6.8 -4.0162 | opp_overlap 2579072, overlap 2579035 2579061 2579072 TACTATATATATTTT TAGGTTTTATTT AAT AAATAAAACATA TTTATAGTATAAAAA TERM 3696 2579171 - 2579138 - R 72 -6.1 -4.42062 | opp_overlap 2579138 2579143, overlap 2579113 2579143 CACTTTTGAAATAAA TTAAAGGACTTGAAT ATAA ATTCAAGCCCTTTCG TTTTATGTTTTTAAT TERM 3697 2579138 - 2579171 + r 78 -6.1 -5.00027 | opp_overlap 2579113 2579138 2579143, overlap 2579143 CACTTTTGAAATAAA TTAAAGGACTTGAAT ATAA ATTCAAGCCCTTTCG TTTTATGTTTTTAAT TERM 3698 2579143 - 2579166 + r 80 -8.2 -4.33927 | opp_overlap 2579143 2579138, overlap 2579138 TTGAAATAAATTAAA GGACTTGAAT ATAA ATTCAAGCCC TTTCGTTTTATGTTT TERM 3699 2579166 - 2579143 - R 95 -10.4 -4.27211 | opp_overlap 2579138 2579143, overlap 2579138 TTGAAATAAATTAAA GGACTTGAAT ATAA ATTCAAGCCC TTTCGTTTTATGTTT spoVS 2579449 - 2579189 - | stage V sporulation protein S TERM 3700 2579570 - 2579522 - R 100 -10.8 -5.27769 | opp_overlap 2579515 2579522, overlap 2579515 ACAAAAAATTAAAAA TTCCTTTTAAATTTTGTAAATT TTAGC AACTTATAAAACTTAAAAGGAA TTTATTTTATAATCT TERM 3701 2579522 - 2579570 + r 88 -8.6 -4.81357 | opp_overlap 2579515 2579522, overlap 2579515 ACAAAAAATTAAAAA TTCCTTTTAAATTTTGTAAATT TTAGC AACTTATAAAACTTAAAAGGAA TTTATTTTATAATCT CLI_2459 2581129 - 2579588 - | phosphodiesterase TERM 3702 2581345 - 2581361 + r 77 -6.6 -4.58213 | opp_overlap 2581345 2581348, overlap 2581340 2581348 TTTTTCATAAAAAAA GTAGGA TAAAC TCCTAC TTTTATCCTTCCTTA TERM 3703 2581361 - 2581345 - R 88 -6.6 -5.60993 | opp_overlap 2581345 2581340 2581348, overlap 2581348 TTTTTCATAAAAAAA GTAGGA TAAAC TCCTAC TTTTATCCTTCCTTA recA 2582422 - 2581364 - | recombinase A TERM 3704 2582545 - 2582503 - R 85 -10.2 -3.15056 | opp_overlap 2582506 2582544, overlap 2582506 2582508 2582512 2582544 AGGGTCAACTTAATA TAATATAAATAAAAGCCCCC TAC AGGAACTTTTATTTAAATTA TTGACAATATATTTT TERM 3705 2582542 - 2582506 - R 73 -7.5 -3.71686 | opp_overlap 2582506, overlap 2582503 2582508 2582512 GTCAACTTAATATAA TATAAATAAAAGCCCCC TAC AGGAACTTTTATTTAAA TTATTGACAATATAT TERM 3706 2582540 - 2582508 - R 87 -10.1 -3.43553 | opp_overlap 2582506, overlap 2582506 2582503 2582512 CAACTTAATATAATA TAAATAAAAGCCCCC TAC AGGAACTTTTATTTA AATTATTGACAATAT TERM 3707 2582536 - 2582512 - R 73 -6.5 -4.34444 | opp_overlap 2582506, overlap 2582508 2582506 2582503 TTAATATAATATAAA TAAAAGCCCCC TAC AGGAACTTTTA TTTAAATTATTGACA pgsA 2583154 - 2582570 - | CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase TERM 3708 2583067 - 2583077 + g 75 -4 -5.20216 | overlap 2583064 TAGCTATTACTGTAC CATA GGG TATG TTTTTTACTGATATA CLI_2462 2584475 - 2583138 - | RNA modification protein TERM 3709 2584330 - 2584358 + g 74 -7.5 -4.01315 | opp_overlap 2584329 2584330 2584333, overlap 2584331 2584333 GCGGTTTCAATAAAT CCACAGGTATTTA CTA TAATTACCTGTGC TTCTTTAGGATTTTT TERM 3710 2584331 - 2584357 + g 83 -11 -2.99162 | opp_overlap 2584330 2584329 2584333, overlap 2584330 2584333 CGGTTTCAATAAATC CACAGGTATTTA CTA TAATTACCTGTG CTTCTTTAGGATTTT TERM 3711 2584580 - 2584601 + r 80 -8.1 -4.2711 | gap 1, opp_overlap 2584577, overlap 2584575 2584583 AGTATTTACATATTT CCT-CGGAAA TAT TTTCCGTAGG TTTCATTGTTTTTAT ftsK 2586846 - 2584570 - | DNA translocase FtsK/SpoIIIE TERM 3712 2584977 - 2584989 + g 72 -4.9 -4.93296 | AAAATAACATATCTC CTTTT CCT AAAAG TTTTTCTGCTCCTGA TERM 3713 2585952 - 2585971 + g 72 -4.4 -5.08255 | CTTTTTTATCTTGTT TATTTAGT TTTG ACTGAATA TTTTGTTTTAAAAGT TERM 3714 2586986 - 2586963 - R 74 -6.2 -4.64861 | CTTTGTTAAAATAAA TATTTAGCTA TATA TAACTAAATA AACATAGCTTGTACA clpP-1 2588019 - 2587327 - | Clp protease TERM 3715 2587603 - 2587623 + g 75 -9.1 -2.97513 | TCCTATTATTAGCCC GTTCATTCT TAT AGGATGAAC TATCATTGTGGCTGT TERM 3716 2588075 - 2588026 - R 79 -8.1 -4.06687 | gap 1, opp_overlap 2588029, overlap 2588027 2588029 ATCTGCCATAAATAA TTACCTCCTACCATATGCATATAA ATA TCTTGTGCATATGGTAG-AGGTAC TATACATAAAAAATA TERM 3717 2588074 - 2588027 - R 90 -11.6 -3.0353 | gap 1, opp_overlap 2588029, overlap 2588026 2588029 TCTGCCATAAATAAT TACCTCCTACCATATGCATATAA ATA TCTTGTGCATATGGTAG-AGGTA CTATACATAAAAAAT TERM 3718 2588072 - 2588029 - R 82 -9.8 -3.07135 | gap 1, opp_overlap 2588029, overlap 2588027 2588026 TGCCATAAATAATTA CCTCCTACCATATGCATATAA ATA TCTTGTGCATATGGTAG-AGG TACTATACATAAAAA TERM 3719 2588029 - 2588072 + r 79 -9.9 -2.64616 | gap 1, opp_overlap 2588029 2588027 2588026 TGCCATAAATAATTA CCTCCTACCATATGCATA TAAATATCT TGTGCATATGGTAG-AGG TACTATACATAAAAA dapG 2589472 - 2588267 - | aspartate kinase I CLI_2466 2589760 - 2589488 - | PRC-barrel domain-containing protein CLI_2467 2591138 - 2589837 - | M16 family peptidase TERM 3720 2591282 - 2591305 + r 73 -2.4 -5.74288 | opp_overlap 2591282 2591288, overlap 2591288 TCACTTGATAAAAAA TAAAAAGGCA GATA TGCCCTTCTA TTTTTTATTATTTAT TERM 3721 2591305 - 2591282 - R 83 -6.8 -5.26316 | opp_overlap 2591282 2591288, overlap 2591288 TCACTTGATAAAAAA TAAAAAGGCA GATA TGCCCTTCTA TTTTTTATTATTTAT TERM 3722 2591299 - 2591288 - R 86 -5.8 -5.8096 | opp_overlap 2591282 2591288, overlap 2591282 GATAAAAAATAAAAA GGCA GATA TGCC CTTCTATTTTTTATT pnpA 2593421 - 2591313 - | polynucleotide phosphorylase/polyadenylase TERM 3723 2593648 - 2593679 + r 70 -5.2 -4.88407 | gap 1, opp_overlap 2593649 2593654, overlap 2593654 GTATAATTTATTAAA ATAATA-GAGCGGGC TTT GGCCGCTCTTATTAC TTTTATTACTTTCTT TERM 3724 2593678 - 2593649 - R 84 -8.7 -4.32049 | gap 1, opp_overlap 2593648 2593654, overlap 2593654 TATAATTTATTAAAA TAATA-GAGCGGGC TTT GGCCGCTCTTATTA CTTTTATTACTTTCT TERM 3725 2593672 - 2593654 - R 90 -10.2 -3.72481 | opp_overlap 2593654 2593648, overlap 2593649 TTTATTAAAATAATA GAGCGGGC TTT GGCCGCTC TTATTACTTTTATTA TERM 3726 2593654 - 2593672 + r 93 -10.2 -4.0219 | opp_overlap 2593649 2593654, overlap 2593648 TTTATTAAAATAATA GAGCGGGC TTT GGCCGCTC TTATTACTTTTATTA rpsO 2593999 - 2593685 - | 30S ribosomal protein S15 TERM 3727 2594086 - 2594055 - R 75 -7.6 -3.85969 | opp_overlap 2594052 2594055 2594054 2594056 2594062, overlap 2594052 2594056 CAAATAAATATATAA TTGTAAATTAATTT TTAT AAATTAATTTACAT ACTTTGTCTTTTAGC TERM 3728 2594085 - 2594056 - R 85 -11.1 -2.89955 | opp_overlap 2594052 2594055 2594054 2594056 2594062, overlap 2594052 2594055 AAATAAATATATAAT TGTAAATTAATTT TTAT AAATTAATTTACA TACTTTGTCTTTTAG TERM 3729 2594056 - 2594085 + r 90 -11.1 -3.18509 | opp_overlap 2594052 2594056 2594055, overlap 2594052 2594055 2594054 2594062 AAATAAATATATAAT TGTAAATTAATTT TTAT AAATTAATTTACA TACTTTGTCTTTTAG ribF 2595001 - 2594081 - | bifunctional riboflavin kinase/FMN adenylyltransferase truB 2595883 - 2595014 - | tRNA pseudouridine synthase B TERM 3730 2595085 - 2595103 + g 72 -4.7 -4.94168 | TAAAACTATCATCTT CTATATA AGTTC TATATAG TTTGTTTTCTTCTAT TERM 3731 2595456 - 2595436 - G 81 -8.5 -4.24606 | opp_overlap 2595436 AATCTATACTTAAAA TACATATAT CAT ATATATGTA TTTTTCTTGCTTCTC TERM 3732 2595436 - 2595456 + g 93 -8.5 -5.2204 | opp_overlap 2595436 AATCTATACTTAAAA TACATATAT CAT ATATATGTA TTTTTCTTGCTTCTC TERM 3733 2595588 - 2595608 + g 72 -4.7 -4.94811 | TTTTTAATAGTCTTT TCTACCTCT ATA GGAGTTAGA TTTATTTCTTTTTCC TERM 3734 2595900 - 2595916 + r 79 -2.3 -6.00086 | TATATCAACTCTTTT TTTATAG TTT CTATTAA TTTTTTTTCTACTAT CLI_2472 2596846 - 2595884 - | DHH family protein TERM 3735 2596815 - 2596785 - G 78 -10.6 -2.87243 | opp_overlap 2596786, overlap 2596791 CCATCAGGAGAAGTA TGGAAAGTAATAGC TAT ACTATTACTTTCCT TTATTTTATCTAGTA TERM 3736 2596786 - 2596814 + g 100 -13.4 -4.84146 | opp_overlap 2596785 2596791 CATCAGGAGAAGTAT GGAAAGTAATAG CTATA CTATTACTTTCC TTTATTTTATCTAGT rbfA 2597198 - 2596836 - | ribosome-binding factor A infB 2599295 - 2597229 - | translation initiation factor IF-2 CLI_2475 2599630 - 2599313 - | hypothetical protein CLI_2476 2599889 - 2599617 - | hypothetical protein nusA 2601270 - 2599951 - | transcription elongation factor NusA CLI_2478 2601748 - 2601287 - | hypothetical protein TERM 3737 2601850 - 2601835 - R 78 -6.8 -4.76892 | opp_overlap 2601835 ATATTAATGTAAAAA CGCAAC TTAC GCTGCG TTTTTTTACAAATAG TERM 3738 2601835 - 2601850 + r 76 -4.6 -5.42259 | opp_overlap 2601835 ATATTAATGTAAAAA CGCAAC TTAC GCTGCG TTTTTTTACAAATAG TERM 3739 2601888 - 2601869 - R 100 -10 -4.40003 | opp_overlap 2601865 2601869 2601871 TTTTACAAATAGAAA GAGCGGGT TCAT ACCCACTC TGTGCTTTAACATAT polC 2606351 - 2602053 - | DNA polymerase III PolC TERM 3740 2603716 - 2603698 - G 91 -9.6 -4.12456 | overlap 2603701 2603708 ATAGTAGCTGCAAAA GAAGATCC AAC GGATCCTC TGGATCCTACTAAAT TERM 3741 2603713 - 2603701 - G 77 -7.7 -4.18506 | overlap 2603698 2603708 GTAGCTGCAAAAGAA GATCC AAC GGATC CTCTGGATCCTACTA gcpE 2607679 - 2606630 - | 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase CLI_2481 2608830 - 2607820 - | putative membrane-associated zinc metalloprotease TERM 3742 2608816 - 2608804 - G 72 -7.7 -3.67918 | overlap 2608797 AACTAATATGCCAAA GGCTA AAA TAGCC GCTACTATATACATT dxr 2610032 - 2608875 - | 1-deoxy-D-xylulose 5-phosphate reductoisomerase CLI_2483 2610710 - 2610069 - | hypothetical protein TERM 3743 2611000 - 2610990 - R 80 -2.6 -6.11243 | opp_overlap 2610990 AGCTAATAAAAAAAA TATT ATG AATA TTATTATAGCATAGA CLI_2484 2611271 - 2611149 - | hypothetical protein CLI_2485 2611517 - 2611329 - | hypothetical protein TERM 3744 2611654 - 2611681 + r 78 -4.3 -5.54885 | opp_overlap 2611654 TATAAAGTAAAAAAA CTCAATCTA AGAATAAATA TAGATTGAG TTTTTTATTCATATT TERM 3745 2611681 - 2611654 - R 82 -4.3 -5.75822 | opp_overlap 2611654 TATAAAGTAAAAAAA CTCAATCTA AGAATAAATA TAGATTGAG TTTTTTATTCATATT cdsA 2612499 - 2611702 - | phosphatidate cytidylyltransferase TERM 3746 2611981 - 2612002 + g 73 -5.9 -4.62872 | overlap 2611983 2612000 GGCTCCTATTATTCC GCCTATAGA ACCT TCTATAGTC TTTTTAGGACTTACT TERM 3747 2611983 - 2612000 + g 74 -7.1 -3.92577 | overlap 2611981 CTCCTATTATTCCGC CTATAGA ACCT TCTATAG TCTTTTTAGGACTTA TERM 3748 2612169 - 2612158 - G 78 -3 -5.50313 | TATAAAACTAAAAAA TATG GGAA CATA TAAAAATCCTAAAAG uppS 2613282 - 2612524 - | undecaprenyl diphosphate synthase TERM 3749 2613323 - 2613338 + r 79 -9 -3.59627 | opp_overlap 2613323 TAAATTATTAAAAAA CCTGCT AATA AGCAGG TTATAATGTTTATAT TERM 3750 2613338 - 2613323 - R 100 -9 -5.243 | opp_overlap 2613323 TAAATTATTAAAAAA CCTGCT AATA AGCAGG TTATAATGTTTATAT frr 2613902 - 2613348 - | ribosome recycling factor pyrH 2614634 - 2613918 - | uridylate kinase TERM 3751 2614982 - 2615000 + r 100 -11.8 -5.4148 | opp_overlap 2614982 TATTTTTCAAAAAAA GAGAACAC TCA GTGTTCTC TTTTTTAATTATTTG TERM 3752 2615000 - 2614982 - R 100 -11.8 -5.41143 | opp_overlap 2614982 TATTTTTCAAAAAAA GAGAACAC TCA GTGTTCTC TTTTTTAATTATTTG tsf 2615932 - 2615009 - | elongation factor Ts TERM 3753 2615689 - 2615672 - G 75 -7.1 -4.08948 | opp_overlap 2615672 2615671, overlap 2615687 TAACTCTACAAATAA TTCGTTT ACTG AAACGAA ATCTGTTTCACAGTT TERM 3754 2615992 - 2615965 - R 75 -7.1 -4.32201 | opp_overlap 2615960 TTAACTAATTTAAAA GGTAAATGAGA GATTAG TCTCACCTACC TTATATTTTTCATTT rpsB 2616721 - 2616020 - | 30S ribosomal protein S2 TERM 3755 2616931 - 2616960 + r 70 -5.1 -4.84673 | opp_overlap 2616934, overlap 2616933 2616934 2616938 CATAATTGTACTAAA AAATAAAGAAGTC CTAA GACTTCTTTACTA TTTTATCTTCTTTAA TERM 3756 2616933 - 2616958 + r 77 -7.7 -4.01819 | opp_overlap 2616934, overlap 2616931 2616934 2616938 TAATTGTACTAAAAA ATAAAGAAGTC CTAA GACTTCTTTAC TATTTTATCTTCTTT TERM 3757 2616957 - 2616934 - R 100 -11.2 -5.16237 | opp_overlap 2616934 2616933 2616931 2616938 AATTGTACTAAAAAA TAAAGAAGTC CTAA GACTTCTTTA CTATTTTATCTTCTT TERM 3758 2616934 - 2616957 + r 87 -11.2 -2.98651 | opp_overlap 2616934, overlap 2616933 2616931 2616938 AATTGTACTAAAAAA TAAAGAAGTC CTAA GACTTCTTTA CTATTTTATCTTCTT TERM 3759 2616938 - 2616953 + r 77 -7.6 -4.11862 | opp_overlap 2616934, overlap 2616934 2616933 2616931 GTACTAAAAAATAAA GAAGTC CTAA GACTTC TTTACTATTTTATCT codY 2617734 - 2616958 - | transcriptional repressor CodY topA 2620031 - 2617941 - | DNA topoisomerase I dprA 2621500 - 2620415 - | DNA protecting protein DprA TERM 3760 2621599 - 2621580 - H 80 -3 -6.10295 | GCAATATAAAAAAAA TAAATATT TGGA AATACTTA TATATTTAAATAAAT TERM 3761 2621935 - 2621925 - g 91 -5.4 -5.71712 | opp_overlap 2621925 GCTGATATAAAAAAA GAAG GTT CTTC CTTTGATTTACCCAT CLI_2495 2621700 - 2623223 + | Mg chelatase-like protein CLI_2496 2623239 - 2623610 + | hypothetical protein TERM 3762 2623631 - 2623615 - T 85 -5.9 -5.56264 | opp_overlap 2623609 2623615, overlap 2623606 TTCAAATATAAAAAA TACACCT AAT AAGTGTA TTTTTATATTGGGGC rnhB 2624502 - 2623693 - | ribonuclease HII TERM 3763 2624760 - 2624736 - R 75 -8.7 -3.26568 | opp_overlap 2624737, overlap 2624735 2624737 CTATACTTATAAAAT TGGATACATTA CTC TAATGTATCCT TCAATTATATAATAT TERM 3764 2624737 - 2624759 + r 93 -12.2 -3.27164 | opp_overlap 2624737 2624736 2624735 TATACTTATAAAATT GGATACATTA CTC TAATGTATCC TTCAATTATATAATA TERM 3765 2624759 - 2624737 - R 86 -12.2 -2.55459 | opp_overlap 2624737, overlap 2624736 2624735 TATACTTATAAAATT GGATACATTA CTC TAATGTATCC TTCAATTATATAATA CLI_2498 2625677 - 2624799 - | ribosomal biogenesis GTPase lepB-2 2626506 - 2625982 - | signal peptidase I TERM 3766 2626464 - 2626451 - G 77 -4.5 -5.32944 | opp_overlap 2626451 GTTATAATTAAAAAA GCTGC TATC ACAGC TACTATTATAGATTT TERM 3767 2626554 - 2626535 - R 82 -5.7 -5.58454 | opp_overlap 2626535 2626526, overlap 2626515 CTTATATGAAAAAAA GGGACTT ATGCTA AAGCCCC TTATGTTTCATTATA rplS 2626909 - 2626565 - | 50S ribosomal protein L19 TERM 3768 2627032 - 2627053 + r 76 -6.1 -4.85177 | opp_overlap 2627032 2627034 AAAATTTTTATTCAA TATTTTTTA CAAT TAAAAAATA TTTTTCCTATAATTT TERM 3769 2627071 - 2627088 + r 70 -4.3 -4.94147 | overlap 2627068 TTTCCTATAATTTTT TATTAAA ATCT TTTAATA TTTTCTTATCTTCTT trmD 2627782 - 2627060 - | tRNA (guanine-N(1)-)-methyltransferase rimM 2628267 - 2627773 - | 16S rRNA-processing protein TERM 3770 2628009 - 2627990 - G 74 -6.4 -4.39002 | opp_overlap 2627981 2627992, overlap 2627992 AAATCTGCTATAAAA TAGCTTCC TTTT GGAAGCTT TACAGAATTTTCTCT TERM 3771 2627992 - 2628007 + g 77 -9 -3.61219 | opp_overlap 2627992 2627990, overlap 2627981 ATCTGCTATAAAATA GCTTCC TTTT GGAAGC TTTACAGAATTTTCT TERM 3772 2628007 - 2627992 - G 80 -9 -3.79687 | opp_overlap 2627981 2627992, overlap 2627990 ATCTGCTATAAAATA GCTTCC TTTT GGAAGC TTTACAGAATTTTCT TERM 3773 2628358 - 2628377 + r 91 -10.8 -3.49938 | opp_overlap 2628358, overlap 2628351 ATTATATATAAAAAA GAGTTAGG TGCA CCTAACTC TTCTAAATTATTTCA TERM 3774 2628377 - 2628358 - R 100 -10.8 -5.43414 | opp_overlap 2628351 2628358 ATTATATATAAAAAA GAGTTAGG TGCA CCTAACTC TTCTAAATTATTTCA CLI_2503 2628607 - 2628380 - | hypothetical protein rpsP 2628876 - 2628628 - | 30S ribosomal protein S16 TERM 3775 2628679 - 2628691 + g 74 -3.4 -5.35222 | CTTAACTGTATCAGT TGGT TGCGC ACCA TTTTTTATCCATTTT TERM 3776 2628925 - 2628913 - R 70 -6.3 -4.19817 | TCTATTTATTTAAAA TGGTA ATT TACCA AATAAACCTTTTTTA ffh 2630256 - 2628907 - | signal recognition particle protein CLI_2506 2630601 - 2630269 - | hypothetical protein TERM 3777 2630719 - 2630694 - R 100 -11.3 -4.98616 | opp_overlap 2630692 TCAAAATATTAAAAA GCTGTCAAGTA TTTT TACTTAACAGC CATAATGTTTTTTAT ftsY 2631736 - 2630825 - | signal recognition particle-docking protein FtsY TERM 3778 2631774 - 2631832 + r 95 -11.9 -3.40775 | gap 1 TATTATTTTATCCGA TGACTACCCGCTCTAATGCTTCCGCCTT CTTA AAAGTGGGAGTATTAGAGCGGCT-GCCA TCTTTGCATAACCAT smc 2635480 - 2631899 - | chromosome segregation protein SMC TERM 3779 2632959 - 2632969 + g 88 -4 -5.67063 | opp_overlap 2632950, overlap 2632950 ATATTAGTATCCATA GAAT ACA ATTC TTTTTTTATACTAAC TERM 3780 2633333 - 2633343 + g 72 -2.6 -5.44638 | TAGATTTTCCTCGTC TAAA GTT TTTA TTTTATTTTTATTCT TERM 3781 2635128 - 2635151 + g 76 -9.8 -2.7752 | overlap 2635127 TCTTTAAGTCTACAT TGAGTATTAT TTAT ATAATACTCA CTTTCACCTGATCTA CLI_2509 2635624 - 2635493 - | hypothetical protein TERM 3782 2635709 - 2635679 - R 77 -9.1 -3.47303 | overlap 2635677 2635675 2635681 AAAACTTAAAATATA TATCCCCACTG AATATGAAA CAGTGGGGACA TTAAAGCTTATATTA TERM 3783 2635707 - 2635681 - R 80 -9.5 -3.28453 | overlap 2635679 2635677 2635675 AACTTAAAATATATA TCCCCACTG AATATGAAA CAGTGGGGA CATTAAAGCTTATAT CLI_2510 2636836 - 2635745 - | radical SAM domain-containing protein TERM 3784 2636784 - 2636773 - G 75 -4.4 -5.31275 | GTTGATTACAAAAAA CACA ATTA TGTG GACATCCTTCCTGAG rnc 2637533 - 2636829 - | ribonuclease III TERM 3785 2637594 - 2637552 - R 87 -10.2 -3.30124 | opp_overlap 2637552 2637547 TTTCACTCCCTAGAA GTTCATTCTTCAGTGTATTT ATT AAATAAACTCAAGAATAAAC TTATCTTTTAATTAT TERM 3786 2637552 - 2637594 + r 77 -8 -4.03665 | opp_overlap 2637552, overlap 2637547 TTTCACTCCCTAGAA GTTCATTCTTCAGTGTATTT ATT AAATAAACTCAAGAATAAAC TTATCTTTTAATTAT TERM 3787 2637647 - 2637626 - R 89 -8.7 -4.66537 | TCTTTTAATATAAAA TCCCCGC TAATAAAG GCGGGGA TAAAAATCAATTATT acpP-1 2637891 - 2637658 - | acyl carrier protein TERM 3788 2637860 - 2637870 + g 82 -5.4 -5.42198 | overlap 2637858 ATACTTAATTGTTCT GCTA TTG TAGC TTTTATTTTTTCAAA plsX 2638976 - 2637969 - | putative glycerol-3-phosphate acyltransferase PlsX TERM 3789 2638136 - 2638126 - G 83 -6.8 -5.02074 | opp_overlap 2638125 2638126 TTAGCCCCTAAAAAA GGTG ATC CACC ATATTCTGTATAATC TERM 3790 2638583 - 2638570 - G 85 -8.1 -4.46212 | TCTGCTATCATAAAA GGAGC TTTA GCTCC TGGAAGTAAGGGTGC TERM 3791 2639055 - 2639038 - R 83 -4.1 -5.95946 | TTAACAAGAAAAAAA GAAAGCC TTAC GACTTCC TTTTTTATAATTATT rpmF 2639248 - 2639066 - | 50S ribosomal protein L32 CLI_2515 2639762 - 2639262 - | ribosomal protein L32 family protein ackA 2641073 - 2639880 - | acetate kinase pta 2642209 - 2641211 - | phosphotransacetylase TERM 3792 2641527 - 2641540 + g 72 -6.7 -4.0942 | overlap 2641518 TCTTTTGCTATTTTT GTAGC TTCT GCTAC TTTATCTACTAAGTC TERM 3793 2642483 - 2642458 - R 100 -11.3 -5.82388 | opp_overlap 2642458 AAACTTGAAAAAAAA CCAGGTAAAAT TTAA ATTTCACCTGG TTTTCAGCATTCAAT TERM 3794 2642458 - 2642483 + r 82 -9.1 -4.1466 | opp_overlap 2642458 AAACTTGAAAAAAAA CCAGGTAAAAT TTAA ATTTCACCTGG TTTTCAGCATTCAAT CLI_2518 2643421 - 2642543 - | hypothetical protein TERM 3795 2642618 - 2642634 + g 73 -8.1 -3.48738 | opp_overlap 2642618 2642617 2642620, overlap 2642617 AATTATAACAACAAT TACTAAC CAT GTTAGTA TATTTAATGGTAATG TERM 3796 2643776 - 2643751 - R 100 -14.9 -4.07568 | opp_overlap 2643739 2643751 GTTGTTCTTTTAAAA GAGCTCTACTT AGCA AAGTAGAGCTC TTTTTTAATTATTAA TERM 3797 2643751 - 2643776 + r 100 -14.9 -5.37865 | opp_overlap 2643751, overlap 2643739 GTTGTTCTTTTAAAA GAGCTCTACTT AGCA AAGTAGAGCTC TTTTTTAATTATTAA CLI_2520 2644507 - 2643788 - | putative D-proline reductase, PrdB subunit, selenocysteine-containing CLI_2521 2644812 - 2644537 - | hypothetical protein prdA 2646935 - 2644821 - | D-proline reductase, PrdA proprotein TERM 3798 2646077 - 2646090 + g 72 -5.3 -4.76963 | GGTCTACATTGAATG CATCT TCAC AGATG TTTTCTCTTATATAA TERM 3799 2647155 - 2647171 + r 73 -8 -3.81307 | overlap 2647153 ACTGCAGCCGCTTGG CCTGGT CATTC ACCAGG TGTTTTACATTTTCC TERM 3800 2647201 - 2647213 + r 75 -7.7 -3.89448 | CTGGTCCATTTCCTT TACCC TTT GGGTA TTCTATGTTTTTGCA TERM 3801 2647794 - 2647822 + r 77 -6.8 -4.72631 | GAAGCTATAGCTTCA GGATGTTTAGCT TTTAT AGCTATATATCC TTTTGTTGAGTTAGT TERM 3802 2649023 - 2648984 - R 100 -19 -2.90615 | gap 1, opp_overlap 2648987 2648988 2649022, overlap 2648987 2648988 2648990 2649006 ATTTCCCCTAAAGGA TAAC-GACTTCTAAGGAGT AAA ACTCCTTAGAAGTCTGTTA ATAAGCTTCAGATGG TERM 3803 2649019 - 2648987 - R 100 -16.5 -3.60151 | opp_overlap 2648987 2648988, overlap 2648984 2648988 2648990 2649006 TCCCCTAAAGGATAA CGACTTCTAAGGAGT AAA ACTCCTTAGAAGTCT GTTAATAAGCTTCAG TERM 3804 2648987 - 2649020 + r 100 -16.3 -3.18681 | gap 1, opp_overlap 2648987 2648984 2648988 2648990 2649006, overlap 2648988 TCCCCTAAAGGATAA C-GACTTCTAAGGAGT AAA ACTCCTTAGAAGTCTG TTAATAAGCTTCAGA TERM 3805 2648988 - 2649018 + r 100 -20 -3.15574 | opp_overlap 2648987 2648984 2648988 2648990 2649006, overlap 2648987 CCCCTAAAGGATAAC GACTTCTAAGGAGT AAA ACTCCTTAGAAGTC TGTTAATAAGCTTCA TERM 3806 2649018 - 2648988 - R 100 -20 -2.75769 | opp_overlap 2648988 2648987, overlap 2648987 2648984 2648990 2649006 CCCCTAAAGGATAAC GACTTCTAAGGAGT AAA ACTCCTTAGAAGTC TGTTAATAAGCTTCA TERM 3807 2649016 - 2648990 - R 100 -16.8 -2.92144 | opp_overlap 2648988 2648987, overlap 2648988 2648987 2648984 2649006 CCTAAAGGATAACGA CTTCTAAGGAGT AAA ACTCCTTAGAAG TCTGTTAATAAGCTT TERM 3808 2649022 - 2649065 + r 100 -12.6 -3.89695 | opp_overlap 2648984 2649028 2649047 TCCTTAGAAGTCTGT TAATAAGCTTCAGATGGAGT AAAA ACTCCCTCTGAAGCTTAGAA TTCTGTTTATAAAAG TERM 3809 2649059 - 2649028 - R 100 -16 -3.62522 | opp_overlap 2649022, overlap 2649047 GAAGTCTGTTAATAA GCTTCAGATGGAGT AAAA ACTCCCTCTGAAGC TTAGAATTCTGTTTA TERM 3810 2649145 - 2649110 - R 100 -14.4 -5.95539 | opp_overlap 2649113 2649115 2649116 CTTTAAATAAAAAAA TAAGAGTTTATACTAA AATT TTAGTACAAACTCTTA GCTCCAATTATAAGA TERM 3811 2649113 - 2649142 + r 78 -9.5 -3.08471 | opp_overlap 2649110, overlap 2649115 2649116 TAAATAAAAAAATAA GAGTTTATACTAA AATT TTAGTACAAACTC TTAGCTCCAATTATA CLI_2525 2650168 - 2649272 - | hypothetical protein TERM 3812 2649755 - 2649745 - G 76 -6.8 -4.50661 | AAGCTACAACTAAAA GGGA TAC TCCC ATACAAAATTGCACT TERM 3813 2650137 - 2650122 - G 86 -2.6 -6.01725 | AAGAAAAATAAAAAA TAGCTT GTTA AAACTA GTAATACTGATAATA TERM 3814 2650457 - 2650410 - R 80 -9.6 -3.28785 | opp_overlap 2650418, overlap 2650418 TTCTAAAAGATTTAA TAAAAAAAGCTTATAATCTT TATTTTGT AAGATTATAAGCTTTCTATA TAAATTACTTTTAAT TERM 3815 2650418 - 2650449 + r 82 -9 -4.15061 | opp_overlap 2650410 2650418 GATTTAATAAAAAAA GCTTATAATCTT TATTTTGT AAGATTATAAGC TTTCTATATAAATTA TERM 3816 2650449 - 2650418 - R 100 -9 -5.8187 | opp_overlap 2650418, overlap 2650410 GATTTAATAAAAAAA GCTTATAATCTT TATTTTGT AAGATTATAAGC TTTCTATATAAATTA CLI_2526 2652496 - 2650478 - | methyl-accepting chemotaxis protein TERM 3817 2652560 - 2652586 + r 80 -9.6 -3.2964 | opp_overlap 2652552 2652562, overlap 2652562 TATAAAATTATTTAG AAGATGTAACTT ATA AAGTTACATCTA TTATAAAAAAAATTT TERM 3818 2652584 - 2652562 - R 95 -12.2 -3.42124 | opp_overlap 2652560 2652562, overlap 2652552 TAAAATTATTTAGAA GATGTAACTT ATA AAGTTACATC TATTATAAAAAAAAT TERM 3819 2652562 - 2652584 + r 93 -12.2 -3.21395 | opp_overlap 2652562 2652552, overlap 2652560 TAAAATTATTTAGAA GATGTAACTT ATA AAGTTACATC TATTATAAAAAAAAT TERM 3820 2652703 - 2652719 + r 78 -9.5 -3.02144 | TTTCACCCCTCCCTT TTCAAGC ACT GCTTGAA TATTGGCACCAGTGG TERM 3821 2653447 - 2653468 + r 78 -5.9 -5.01732 | opp_overlap 2653447 2653452 CTGTAAAATAAAAAA GAGAATCTT TAAA AAGACTCTC TTTTTTACGAAAATT TERM 3822 2653468 - 2653447 - R 100 -8.1 -5.79595 | opp_overlap 2653447, overlap 2653452 CTGTAAAATAAAAAA GAGAATCTT TAAA AAGACTCTC TTTTTTACGAAAATT CLI_2528 2654603 - 2653518 - | hypothetical protein CLI_2529 2655748 - 2654672 - | hypothetical protein CLI_2530 2656162 - 2655965 - | hypothetical protein TERM 3823 2656327 - 2656311 - g 71 -2.3 -5.40004 | overlap 2656326 TATTAAATGAAAAAA TCCTTAA CAT TCAAAGA CATGGTTTTAATGAC TERM 3824 2656755 - 2656774 + G 88 -8.6 -4.37199 | GTTATAGGTGGACTC GTAGGAAG TGTA CTTCCTGC TTTATTAATTATAAT TERM 3825 2657252 - 2657237 - g 71 -4.7 -4.84363 | opp_overlap 2657237 TGAAACTAGTAAAAA TGGTG TTTTAC CACCA TTCTTAACAAAAACA CLI_2531 2656302 - 2657747 + | amino acid permease family protein TERM 3826 2657791 - 2657761 - T 100 -8.5 -5.33921 | opp_overlap 2657761 AAATTAATGAAAAAA TCTATCTGATTAT AAGTA AGAATCAGATAGA TTTTTTTATTAATTT TERM 3827 2657761 - 2657791 + T 100 -8.5 -5.9003 | opp_overlap 2657761 AAATTAATGAAAAAA TCTATCTGATTAT AAGTA AGAATCAGATAGA TTTTTTTATTAATTT CLI_2532 2658769 - 2657900 - | hypothetical protein TERM 3828 2658645 - 2658657 + g 72 -6.3 -4.28115 | AACCCTACTGCACCA GCTTT CCA AAAGC TTATTTCTTCTAAAT TERM 3829 2659144 - 2659112 - R 91 -7 -5.52986 | ATTTTATTAAAAAAA GATGGACTCCACGC AATAA ACATTGAGCCCATC TTTAAGTAATCATTG CLI_2533 2660301 - 2659294 - | proline racemase TERM 3830 2659522 - 2659510 - G 76 -7.7 -3.9093 | opp_overlap 2659510 2659509 TTGAGCATATAACAA TGCCA TTT TGGCA CTTGTACCAGTTCCA prdE 2660786 - 2660316 - | PrdE protein TERM 3831 2660370 - 2660352 - G 76 -6.1 -4.66833 | opp_overlap 2660329 2660352 TTTTAATTTTAAAAA TGCTAAA GCTTT TTTAGCA TCTATTGGCATAACA prdD 2661576 - 2660800 - | PrdD protein TERM 3832 2661892 - 2661853 - R 100 -13.2 -4.10552 | gap 1, opp_overlap 2661853 TTTTATTAAAGGAAA TGCAATAATG-AGTTCAGT AAA ACTGCACTACATTATTGCA TTTTTTATTTTTAAT TERM 3833 2661853 - 2661892 + r 100 -13.2 -5.95286 | gap 1, opp_overlap 2661853 TTTTATTAAAGGAAA TGCAATAATG-AGTTCAGT AAA ACTGCACTACATTATTGCA TTTTTTATTTTTAAT prdB-1 2662642 - 2661917 - | D-proline reductase, PrdB subunit, selenocysteine-containing TERM 3834 2662427 - 2662440 + g 72 -5.3 -4.7173 | TCCACCATGAGATAC CATCA TATC TGATG TTTTTGCATCTCCTG TERM 3835 2662525 - 2662542 + g 76 -9.9 -2.87259 | opp_overlap 2662516, overlap 2662523 2662530 2662532 AGTGAACTCCTGCTG CAGTAGC TATG GCTACTG TCATATCTTTTAGTT CLI_2538 2662993 - 2662718 - | hypothetical protein CLI_2539 2665110 - 2663002 - | putative D-proline reductase, PrdA proprotein TERM 3836 2663131 - 2663145 + g 70 -3.5 -5.09173 | TTTAACATTTGCATT CCAGG CTCTT TCTGG TTTTTTAACATCTTC TERM 3837 2665305 - 2665320 + r 72 -9 -2.74012 | CTCCATCTTTTTTTA GCTGCA TAAC TGCAGC TGCTTGGCCTGGTCA TERM 3838 2665328 - 2665344 + r 73 -8 -3.81307 | overlap 2665326 ACTGCAGCTGCTTGG CCTGGT CATTC ACCAGG TGTTTTGCATTTTCC TERM 3839 2666407 - 2666420 + r 71 -6.7 -4.08064 | ACAAGATACATCTGG TGCAC CTAC GTGCA TTTTAAGGGAGAATT TERM 3840 2666900 - 2666844 - R 100 -17.9 -3.4033 | opp_overlap 2666844 2666850, overlap 2666850 AAATTATATATAATA GTAAAAGTTTATAAAAAGTTTTTCACA TAA TGTAATAAGCTTTTTATAAACTTTTAC TATATTTATCCTTTA TERM 3841 2666844 - 2666900 + r 100 -17.9 -3.40022 | opp_overlap 2666844 2666850, overlap 2666850 AAATTATATATAATA GTAAAAGTTTATAAAAAGTTTTTCACA TAA TGTAATAAGCTTTTTATAAACTTTTAC TATATTTATCCTTTA TERM 3842 2666894 - 2666850 - R 100 -11.1 -4.48263 | opp_overlap 2666844 2666850, overlap 2666844 TATATAATAGTAAAA GTTTATAAAAAGTTTTTCACA TAA TGTAATAAGCTTTTTATAAAC TTTTACTATATTTAT TERM 3843 2666850 - 2666894 + r 100 -11.1 -4.47397 | opp_overlap 2666850 2666844, overlap 2666844 TATATAATAGTAAAA GTTTATAAAAAGTTTTTCACA TAA TGTAATAAGCTTTTTATAAAC TTTTACTATATTTAT TERM 3844 2667071 - 2667022 - R 100 -14.1 -5.0916 | opp_overlap 2667026 2667028 2667029, overlap 2667029 TTTCTAATATAAAAA TAAAGAAGGAAATTCAATGATAT TTTT ATATCATTAAATTTCCCTGTTTA ATATAATTTTATTTA TERM 3845 2667028 - 2667065 + r 79 -8.7 -3.53452 | opp_overlap 2667022 2667029, overlap 2667026 2667029 ATATAAAAATAAAGA AGGAAATTCAATGATAT TTTT ATATCATTAAATTTCCC TGTTTAATATAATTT TERM 3846 2667029 - 2667064 + r 88 -12.2 -2.70986 | opp_overlap 2667029 2667022, overlap 2667028 2667026 TATAAAAATAAAGAA GGAAATTCAATGATAT TTTT ATATCATTAAATTTCC CTGTTTAATATAATT TERM 3847 2667064 - 2667029 - R 100 -14.4 -4.56117 | opp_overlap 2667028 2667026 2667029, overlap 2667022 TATAAAAATAAAGAA GGAAATTCAATGATAT TTTT ATATCATTAAATTTCC CTGTTTAATATAATT CLI_2542 2667754 - 2667092 - | hypothetical protein CLI_2543 2669098 - 2667794 - | putative electron transport protein CLI_2544 2669097 - 2669213 + | hypothetical protein TERM 3848 2669402 - 2669383 - TR 100 -9.4 -5.88565 | opp_overlap 2669383 2669387 TTTATAATAAAAAAA TAAAGGCA TTTC TGCCTTTA TTTAGATTGAATACA TERM 3849 2669383 - 2669402 + Tr 84 -9.4 -3.76952 | opp_overlap 2669383, overlap 2669387 TTTATAATAAAAAAA TAAAGGCA TTTC TGCCTTTA TTTAGATTGAATACA CLI_2545 2670057 - 2669530 - | hypothetical protein CLI_2546 2670541 - 2670062 - | hypothetical protein TERM 3850 2670699 - 2670665 - R 81 -7.4 -4.8048 | opp_overlap 2670671 2670673, overlap 2670646 2670645 2670667 TTTTTATAGTAAAAA CATAAATCCATCTATA TGA TATAGATGTATTTATC AGATTGAAAACAAAA TERM 3851 2670697 - 2670667 - R 93 -10 -4.02302 | opp_overlap 2670671 2670673, overlap 2670646 2670645 2670665 TTTATAGTAAAAACA TAAATCCATCTATA TGA TATAGATGTATTTA TCAGATTGAAAACAA CLI_2547 2670944 - 2670645 - | hypothetical protein TERM 3852 2670673 - 2670691 + g 77 -9 -3.55191 | opp_overlap 2670667 2670665, overlap 2670671 GTAAAAACATAAATC CATCTATA TGA TATAGATG TATTTATCAGATTGA TERM 3853 2670750 - 2670710 - G 100 -10.7 -4.24948 | opp_overlap 2670710 2670715, overlap 2670715 TTATCAGATTGAAAA CAAAAGGCTTATGAGAAGT TAA ATTTTTCATAAGCCTTTTA ATATTTCTAATATAT TERM 3854 2670710 - 2670750 + g 100 -12.9 -2.75982 | opp_overlap 2670710 2670715, overlap 2670715 TTATCAGATTGAAAA CAAAAGGCTTATGAGAAGT TAA ATTTTTCATAAGCCTTTTA ATATTTCTAATATAT TERM 3855 2670745 - 2670715 - G 93 -8.4 -5.11836 | opp_overlap 2670710 2670715, overlap 2670710 AGATTGAAAACAAAA GGCTTATGAGAAGT TAA ATTTTTCATAAGCC TTTTAATATTTCTAA TERM 3856 2670715 - 2670745 + g 100 -12.8 -4.53036 | opp_overlap 2670715 2670710, overlap 2670710 AGATTGAAAACAAAA GGCTTATGAGAAGT TAA ATTTTTCATAAGCC TTTTAATATTTCTAA TERM 3857 2670982 - 2670950 - R 75 -5.6 -4.91511 | opp_overlap 2670957, overlap 2670953 ATTTTAGCATAAAAA TAAGCTGTAGACTA TCTAG TTGTCTACAGCCTG AAACAATGGCATAAA TERM 3858 2670979 - 2670953 - R 93 -9.5 -4.56153 | opp_overlap 2670957, overlap 2670950 TTAGCATAAAAATAA GCTGTAGACTA TCTAG TTGTCTACAGC CTGAAACAATGGCAT TERM 3859 2670986 - 2671005 + r 80 -3.5 -5.85011 | opp_overlap 2670986 GTCTACAGCCTGAAA CAATGGC ATAAAA GCCTTTG TTTTTTTAATTTTTA CLI_2548 2671446 - 2671018 - | PrdA domain-containing protein CLI_2549 2672787 - 2671477 - | putative electron transport protein TERM 3860 2672992 - 2672962 - R 75 -8.6 -3.55801 | opp_overlap 2672964 2672968, overlap 2672968 2672987 ATCAATTTTTTTAAA TTTAAATTAAATCA TAC TGATTTAATTTATA ATATAAAGTACTTCT TERM 3861 2672964 - 2672990 + r 83 -11.2 -2.64091 | opp_overlap 2672962 2672968 2672987, overlap 2672968 CAATTTTTTTAAATT TAAATTAAATCA TAC TGATTTAATTTA TAATATAAAGTACTT TERM 3862 2672986 - 2672968 - R 75 -7.6 -3.84451 | opp_overlap 2672964 2672968, overlap 2672962 TTTTTTAAATTTAAA TTAAATCA TAC TGATTTAA TTTATAATATAAAGT TERM 3863 2672968 - 2672986 + r 77 -7.6 -4.01888 | opp_overlap 2672968 2672962, overlap 2672964 TTTTTTAAATTTAAA TTAAATCA TAC TGATTTAA TTTATAATATAAAGT CLI_2550 2674717 - 2672963 - | sensory box sigma-54 dependent transcriptional regulator TERM 3864 2673834 - 2673844 + g 76 -5.4 -5.1287 | AGAACACTAGCAGAG GTAG GCG CTAC TTTTTTAGCTATAGC TERM 3865 2675280 - 2675292 + G 85 -2 -6.09196 | TACATTATATAGTCT TTCT TCTGC AGAA TTTTTTTCTTTTGGA CLI_2551 2675053 - 2676282 + | hypothetical protein TERM 3866 2677138 - 2677115 - g 100 -11.2 -5.09685 | opp_overlap 2677114, overlap 2677128 TAATACAGATAAAAA CCTAATAGAA GGAT TTCTATTAGG CTTAGTAGAAATGAC CLI_2552 2676342 - 2677508 + | nucleoside recognition domain-containing protein CLI_2553 2678033 - 2677509 - | hypothetical protein TERM 3867 2677578 - 2677602 + g 76 -2.8 -5.5353 | opp_overlap 2677582, overlap 2677582 CTCTACACTTTCTTC TAAAGAAGCC GTAAA GGCTTCTAAA TTTTTTCTTAATATA TERM 3868 2677598 - 2677582 - G 71 -8 -3.53563 | opp_overlap 2677582 2677578 ACACTTTCTTCTAAA GAAGCC GTAAA GGCTTC TAAATTTTTTCTTAA coaD 2678540 - 2678046 - | pantetheine-phosphate adenylyltransferase CLI_2555 2679099 - 2678542 - | putative methyltransferase recG 2681400 - 2679361 - | ATP-dependent DNA helicase RecG TERM 3869 2681502 - 2681533 + r 100 -17.4 -3.62522 | opp_overlap 2681495, overlap 2681503 TAAGCAGAGTTCTTG GCTTCAGAGGGAGT TTTC ACTCCCACTGAAGC TTATTAACAGAATTC TERM 3870 2681538 - 2681577 + r 73 -8.8 -2.90615 | gap 1, opp_overlap 2681495 2681546, overlap 2681542 2681543 2681545 CCCACTGAAGCTTAT TAACAGAATTCTTAGGAGT TTT ACTCCTTAGAAGTC-GTTA TCCTTTAGGAGAAAT TERM 3871 2681543 - 2681573 + r 79 -9.8 -2.75769 | opp_overlap 2681546, overlap 2681542 2681538 2681545 TGAAGCTTATTAACA GAATTCTTAGGAGT TTT ACTCCTTAGAAGTC GTTATCCTTTAGGAG TERM 3872 2681570 - 2681546 - R 90 -10.1 -3.71552 | opp_overlap 2681545 2681543 2681542 2681538 AGCTTATTAACAGAA TTCTTAGGAGT TTT ACTCCTTAGAA GTCGTTATCCTTTAG TERM 3873 2681700 - 2681686 - R 73 -4.4 -5.23396 | opp_overlap 2681695 AAGAAGTAATAAAAA TTTAAA TTG TTTAAA TAAAGTTTAAATATA TERM 3874 2681747 - 2681712 - R 95 -12.2 -3.78141 | opp_overlap 2681717, overlap 2681717 TAAATAAAGTTTAAA TATAATAAAAAAAGCC CTTA GGCTTTTTTTATTCTA CAGACATTATAAAAT TERM 3875 2681717 - 2681742 + r 95 -12.1 -3.30338 | opp_overlap 2681712 2681717 AAAGTTTAAATATAA TAAAAAAAGCC CTTA GGCTTTTTTTA TTCTACAGACATTAT TERM 3876 2681742 - 2681717 - R 100 -12.1 -3.84619 | opp_overlap 2681717, overlap 2681712 AAAGTTTAAATATAA TAAAAAAAGCC CTTA GGCTTTTTTTA TTCTACAGACATTAT CLI_2557 2683365 - 2681740 - | DAK2 domain-containing protein TERM 3877 2682160 - 2682172 + g 76 -3.5 -5.44119 | TATAGTTTTAGTAGG TATAA CTA TTATA TTTTTTTCGGATAGC TERM 3878 2683274 - 2683287 + g 90 -3.9 -6.17268 | GGGAAAACATTTAGA GAATT TACA AATTC TTTTTTTTCTTCTAA CLI_2558 2683730 - 2683380 - | hypothetical protein rpmB 2683930 - 2684121 + | ribosomal protein L28 TERM 3879 2684117 - 2684166 + T 100 -9.7 -5.75538 | opp_overlap 2684111 2684131, overlap 2684119 2684131 AGGTACAACGTGCTA TATAACACAAAAAATGCAGTTGT TTAA ACAATTGCATTTTTTATTTTATG TTTTTATTTTTTAAC TERM 3880 2684119 - 2684164 + T 100 -10.1 -4.48934 | opp_overlap 2684111 2684131, overlap 2684117 2684131 GTACAACGTGCTATA TAACACAAAAAATGCAGTTGT TTAA ACAATTGCATTTTTTATTTTA TGTTTTTATTTTTTA TERM 3881 2684152 - 2684131 - T 85 -5.9 -5.53436 | opp_overlap 2684119 2684117 2684131 ATATAACACAAAAAA TGCAGTTGT TTAA ACAATTGCA TTTTTTATTTTATGT TERM 3882 2684131 - 2684152 + T 100 -8.1 -5.8901 | opp_overlap 2684131, overlap 2684119 2684117 ATATAACACAAAAAA TGCAGTTGT TTAA ACAATTGCA TTTTTTATTTTATGT CLI_2560 2684289 - 2684170 - | hypothetical protein TERM 3883 2684318 - 2684300 - R 78 -4.6 -5.48514 | ATCAATAAATAAAAA CTGTTATA AAA TTTAACAG CTGTATAATAAAATA CLI_2561 2684522 - 2684367 - | hypothetical protein TERM 3884 2684808 - 2684768 - R 95 -10.7 -4.10363 | opp_overlap 2684768, overlap 2684760 ATAAAAATCTAGAAA TGAGAGTATCTTAAAATAG ATT CAATTTTAAAACACCCTCA TTTTATTTTTGTATA TERM 3885 2684768 - 2684808 + r 72 -4.1 -5.38839 | opp_overlap 2684768 2684760 ATAAAAATCTAGAAA TGAGAGTATCTTAAAATAG ATT CAATTTTAAAACACCCTCA TTTTATTTTTGTATA CLI_2562 2685595 - 2684951 - | thiamine pyrophosphokinase TERM 3886 2685164 - 2685200 + g 85 -8.4 -4.40993 | TGACTTTCTAGGCTT TAATGAAATATCTTTA TCTGT TAAAAATATTTCATTA TTTTCATCCTTTATA TERM 3887 2685400 - 2685423 + g 70 -8.3 -3.10481 | overlap 2685399 TATCCATACATACTC CCTTTTCTT TAAAAT AAGAAAAGG CTTCTTTATCTATAG rpe 2686247 - 2685597 - | ribulose-phosphate 3-epimerase rsgA 2687119 - 2686241 - | ribosome-associated GTPase TERM 3888 2686998 - 2687039 + g 80 -9.6 -3.27565 | gap 1, opp_overlap 2686993 2686995 2687004, overlap 2687004 TCTACATAATCACCG ATCATAGGGGTAAGTTCAG TGTGC CTGAACTTACCCCT-TGCC TTACATTCTATAATT TERM 3889 2687034 - 2687004 - G 100 -18.5 -2.8194 | opp_overlap 2687004 2686998, overlap 2686993 2686995 TAATCACCGATCATA GGGGTAAGTTCAG TGTGC CTGAACTTACCCC TTGCCTTACATTCTA TERM 3890 2687004 - 2687034 + g 100 -18.5 -3.21705 | opp_overlap 2686993 2686995 2687004, overlap 2686998 TAATCACCGATCATA GGGGTAAGTTCAG TGTGC CTGAACTTACCCC TTGCCTTACATTCTA CLI_2565 2689284 - 2687326 - | protein kinase CLI_2566 2690011 - 2689262 - | protein phosphatase family protein CLI_2567 2691058 - 2690030 - | radical SAM protein TERM 3891 2690260 - 2690270 + g 70 -4 -4.87318 | overlap 2690255 GTTTTTTAGCTTCTT TGAT AGA ATCA TTTTTACCTTTTACC sun 2692398 - 2691070 - | ribosomal RNA small subunit methyltransferase B TERM 3892 2691706 - 2691724 + g 81 -2.5 -5.82281 | gap 1 CTGTACAGTAATATT CCCTTCTA TAAA TA-AAGGG TTTTTTTCTATGTTT TERM 3893 2691946 - 2691919 - G 71 -8.6 -2.85668 | opp_overlap 2691920 CATTTCTATACCATA TTGGCTTATAAA CATT TTTATAAGCCAT TTAGGATAGGAATAC TERM 3894 2691920 - 2691945 + g 95 -12.1 -3.60296 | opp_overlap 2691919 ATTTCTATACCATAT TGGCTTATAAA CATT TTTATAAGCCA TTTAGGATAGGAATA CLI_2569 2693135 - 2692419 - | putative neutral zinc metallopeptidase TERM 3895 2692731 - 2692749 + g 76 -6.8 -4.44667 | overlap 2692733 TTGGGAACTAATATT TACTATAG GAA CTATAGTG TTTCTTATTACAAGA TERM 3896 2692733 - 2692747 + g 71 -7.2 -3.82963 | overlap 2692731 GGGAACTAATATTTA CTATAG GAA CTATAG TGTTTCTTATTACAA fmt 2694394 - 2693453 - | methionyl-tRNA formyltransferase def-2 2694854 - 2694411 - | peptide deformylase priA 2697089 - 2694882 - | primosome assembly protein PriA TERM 3897 2696993 - 2697035 + g 70 -5.8 -4.21701 | opp_overlap 2697009 2697028, overlap 2697028 2697029 CTCTATGTCCTATTC TTATTTTTTTATTCAATTCC TCT GGAATAGCATAAGTAAATAA TTTATCTAATTTTAT coaBC 2698415 - 2697228 - | bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase rpoZ 2698635 - 2698417 - | DNA-directed RNA polymerase, omega subunit gmk 2699245 - 2698616 - | guanylate kinase TERM 3898 2699121 - 2699162 + g 70 -3.7 -5.06103 | gap 1, overlap 2699109 2699121 2699124 TCCTCTCCCTTTCTT GG-AGATCTAGTGGTGGCAG AAA CTGATACCCATAGGTCTTCC TTTTTTAAAAGTTCT CLI_2576 2699520 - 2699245 - | hypothetical protein CLI_2577 2700414 - 2699536 - | hypothetical protein TERM 3899 2700570 - 2700591 + r 76 -6.1 -4.87807 | ATAACACTATATTTT TATAATTAT TAAA ATAATTATA TTTTTAGTATCTTAA ansA 2701609 - 2700608 - | L-asparaginase, type II TERM 3900 2701263 - 2701296 + g 82 -6.9 -4.98857 | gap 1, overlap 2701272 AGTTCAGAACTACTT CTCATAGCTCCTGTAA CTA TTACAGGT-TTATGAG TTTTTATAGTTAAAT TERM 3901 2701272 - 2701288 + g 88 -9.5 -4.10363 | overlap 2701263 CTACTTCTCATAGCT CCTGTAA CTA TTACAGG TTTATGAGTTTTTAT spoIVA 2704070 - 2702589 - | stage IV sporulation protein A CLI_2580 2704355 - 2704693 + | hypothetical protein TERM 3902 2704691 - 2704749 + T 100 -17.3 -2.96637 | gap 1, opp_overlap 2704697, overlap 2704697 2704700 ATTCTTAAGATAATG TAAAAAGCACTAATCTAAAAGGTAGAAG ACAT CTTCTACC-TTTAGATTAGTACTTTATA TATAATTAATATCTT TERM 3903 2704743 - 2704697 - T 100 -18.5 -4.8066 | gap 1, opp_overlap 2704691 2704697 2704700 AAGATAATGTAAAAA GCACTAATCTAAAAGGTAGAAG ACAT CTTCTACC-TTTAGATTAGTAC TTTATATATAATTAA TERM 3904 2704697 - 2704743 + T 100 -16.3 -4.17417 | gap 1, opp_overlap 2704697, overlap 2704691 2704700 AAGATAATGTAAAAA GCACTAATCTAAAAGGTAGAAG ACAT CTTCTACC-TTTAGATTAGTAC TTTATATATAATTAA TERM 3905 2704700 - 2704740 + T 100 -16.6 -3.09517 | gap 1, opp_overlap 2704697, overlap 2704697 2704691 ATAATGTAAAAAGCA CTAATCTAAAAGGTAGAAG ACAT CTTCTACC-TTTAGATTAG TACTTTATATATAAT CLI_2581 2705761 - 2704763 - | NAD(P)H-dependent glycerol-3-phosphate dehydrogenase TERM 3906 2705608 - 2705626 + g 74 -3.2 -5.34055 | GTATTACTACTTTAG GTAAATAT TTT ATATTTTC TTTTTTGATATTTAT CLI_2582 2707251 - 2705932 - | GTP-binding protein EngA CLI_2583 2708588 - 2707254 - | hypothetical protein phoU 2709692 - 2709039 - | phosphate transport system regulatory protein PhoU TERM 3907 2709286 - 2709299 + g 70 -5.3 -4.60713 | opp_overlap 2709286 TTTTCATTCACATAA GAATC CAAA GATTC TTTTATCATATTTTG pstB 2710471 - 2709722 - | phosphate ABC transporter, ATP-binding protein TERM 3908 2710498 - 2710512 + r 75 -3.6 -5.52909 | CTTAATTATCCCCTG TATACA TTT TGTGTA TTTTTTTGCCTATTA pstA 2711368 - 2710484 - | phosphate ABC transporter, permease protein PstA TERM 3909 2711038 - 2711022 - G 70 -5.1 -4.57205 | AAAAAGCCAAATAAA CCTACTA CTA TAGAAGG AAGGGAAGCCATAGT TERM 3910 2711316 - 2711305 - G 83 -2.2 -5.95946 | TTAATAATAAAAAAA CTAC CATT GCAG AAATAAAATATAATA pstC 2712291 - 2711368 - | phosphate ABC transporter, permease protein PstC TERM 3911 2711947 - 2711923 - G 73 -8.7 -3.05775 | opp_overlap 2711925 2711927, overlap 2711922 2711946 AGCAGGCTTTAAAAT TTTATCTCCTA ATT TAGGAGATATA TAATTTATAAATATA TERM 3912 2711925 - 2711945 + g 91 -11.3 -3.06711 | opp_overlap 2711923 2711922, overlap 2711927 CAGGCTTTAAAATTT TATCTCCTA ATT TAGGAGATA TATAATTTATAAATA TERM 3913 2711927 - 2711943 + g 76 -9.5 -3.08467 | opp_overlap 2711923 2711922, overlap 2711925 GGCTTTAAAATTTTA TCTCCTA ATT TAGGAGA TATATAATTTATAAA pstS 2713371 - 2712499 - | phosphate ABC transporter, phosphate-binding protein TERM 3914 2713552 - 2713604 + r 100 -7.5 -5.52079 | gap 1, opp_overlap 2713560, overlap 2713555 2713560 CTAAAATCCTATATA TAGAAAAATGAAGAAGTTTTTGTT ATAGGC ACCAAAAACTTCTTCA-TTTTATA TTTTTATTTTAATCT TERM 3915 2713555 - 2713602 + r 100 -11.7 -4.37486 | opp_overlap 2713560, overlap 2713552 2713560 AAATCCTATATATAG AAAAATGAAGAAGTTTTTGTT ATAGGC ACCAAAAACTTCTTCATTTTA TATTTTTATTTTAAT TERM 3916 2713597 - 2713560 - R 100 -12.3 -5.07275 | opp_overlap 2713555 2713552 2713560 CTATATATAGAAAAA TGAAGAAGTTTTTGTTA TAGG CACCAAAAACTTCTTCA TTTTATATTTTTATT TERM 3917 2713560 - 2713597 + r 100 -11.6 -5.0432 | opp_overlap 2713560, overlap 2713555 2713552 CTATATATAGAAAAA TGAAGAAGTTTTTGTT ATAGGC ACCAAAAACTTCTTCA TTTTATATTTTTATT CLI_2589 2715327 - 2713618 - | putative phosphate regulon sensor protein TERM 3918 2714749 - 2714770 + g 81 -4.5 -5.35222 | GTCTCCTCTTGCTAT TCTTGAAGT TACA AATTCAAGA TTTTTTATAGGTTTT TERM 3919 2714853 - 2714868 + g 91 -4.8 -5.9873 | opp_overlap 2714853, overlap 2714842 ATAATATTATAGAAA TATAGT ATTT ACTATA TTTTTTTTCTAATAA CLI_2590 2716037 - 2715339 - | putative phosphate regulon DNA-binding response regulator TERM 3920 2716011 - 2716021 + g 72 -4 -5.08824 | ATGTTCTTCATCGTC TACT ATA AGTA TTTTTTCCATAGCCA CLI_2591 2716767 - 2716048 - | hypothetical protein TERM 3921 2716913 - 2716944 + r 95 -11.6 -3.62522 | opp_overlap 2716906, overlap 2716914 TAAACAGAGTTCTTG GCTTCAGAGGGAGT TTTT ACTCCCTCCAAAGC TTATTAACAGAATTC TERM 3922 2716981 - 2716957 - R 90 -10.1 -3.71552 | opp_overlap 2716956 2716957 AGCTTATTAACAGAA TTCTTAGGAGT TTT ACTCCTTAGAA GTTGTTATCCTTTAG TERM 3923 2716957 - 2716981 + r 82 -10.1 -2.95207 | opp_overlap 2716957, overlap 2716956 AGCTTATTAACAGAA TTCTTAGGAGT TTT ACTCCTTAGAA GTTGTTATCCTTTAG TERM 3924 2717180 - 2717152 - R 93 -6.9 -5.86976 | opp_overlap 2717157 2717168 TTACAAAATAAAAAA CCCAATACTATTA CCA TAATAGCATTAAG TTTTTACATGCTTAA nrdR 2717672 - 2717217 - | transcriptional regulator NrdR CLI_2593 2718066 - 2717803 - | PRC-barrel domain-containing protein TERM 3925 2718175 - 2718147 - R 100 -13.4 -5.77571 | opp_overlap 2718141 2718139 2718151 ATTAAAAAATAAAAA GCTACTGATAAA AAATA TTTATCAGTAGC TTAAAATGTTCTCTA sigG 2718986 - 2718213 - | sporulation sigma factor SigG sigE 2719768 - 2719061 - | sporulation sigma factor SigE spoIIGA 2720577 - 2719780 - | sporulation factor SpoIIGA TERM 3926 2720766 - 2720735 - R 76 -6.2 -4.87665 | opp_overlap 2720712 2720700 2720738 2720754, overlap 2720705 2720738 TTTTATCTACAAAAA TAGTATATTAAAAA GTAT TTTTTAATATATTA TTAGAATATTTATAA TERM 3927 2720738 - 2720763 + r 73 -7.9 -3.69373 | opp_overlap 2720705 2720735 2720738, overlap 2720712 2720700 2720754 TATCTACAAAAATAG TATATTAAAAA GTAT TTTTTAATATA TTATTAGAATATTTA TERM 3928 2720862 - 2720882 + r 100 -14.1 -4.11938 | opp_overlap 2720862 TTACATATAAAAAAA GTAGGGAAC ATT GTTCCCTAC TTTATAATTACTTTC TERM 3929 2720882 - 2720862 - R 100 -14.1 -5.76633 | opp_overlap 2720862 TTACATATAAAAAAA GTAGGGAAC ATT GTTCCCTAC TTTATAATTACTTTC ftsZ 2721999 - 2720890 - | cell division protein FtsZ ftsA 2723275 - 2722022 - | cell division protein FtsA TERM 3930 2723414 - 2723430 + r 87 -10.9 -2.97122 | opp_overlap 2723414, overlap 2723409 AAAAAAGCAAAAAAA GGAAAGC TAT GCTTTCC TCTAGTTAACTTTTT TERM 3931 2723430 - 2723414 - R 100 -10.9 -5.88061 | opp_overlap 2723414 2723409 AAAAAAGCAAAAAAA GGAAAGC TAT GCTTTCC TCTAGTTAACTTTTT CLI_2599 2724706 - 2723432 - | glycosyl transferase, group 2 family protein TERM 3932 2723460 - 2723478 + g 76 -9 -3.52668 | TCTAGTTCATCTATA TTCATACT TCT AGTATGAA TTGTATGACTCCATT TERM 3933 2723877 - 2723865 - G 81 -4.9 -5.48303 | ATAAGCTTAAAAAAA TATCT ACT AGATA CATCTGCAAAACCTT TERM 3934 2724302 - 2724313 + g 86 -3 -5.91981 | TGCATCAAACACTGC TATG GCAT CATA TTTTTTTTCCATTTT CLI_2600 2725144 - 2725287 + | hypothetical protein TERM 3935 2725317 - 2725282 - T 93 -13.6 -2.8844 | opp_overlap 2725284 2725293, overlap 2725293 TTAGATTATATGATA TTTTAAAAAAAGGACC AAAA GGTCCTTTTTTTAATA TTACCAAATGCATAA TERM 3936 2725284 - 2725315 + T 100 -16.2 -3.03243 | opp_overlap 2725282 2725293, overlap 2725293 AGATTATATGATATT TTAAAAAAAGGACC AAAA GGTCCTTTTTTTAA TATTACCAAATGCAT TERM 3937 2725306 - 2725293 - T 100 -8.1 -5.45726 | opp_overlap 2725284 2725293, overlap 2725282 GATATTTTAAAAAAA GGACC AAAA GGTCC TTTTTTTAATATTAC TERM 3938 2725293 - 2725306 + T 100 -8.1 -5.63374 | opp_overlap 2725293 2725282, overlap 2725284 GATATTTTAAAAAAA GGACC AAAA GGTCC TTTTTTTAATATTAC pilT 2726417 - 2725365 - | twitching motility protein aroE 2727195 - 2726419 - | shikimate 5-dehydrogenase TERM 3939 2726473 - 2726454 - G 71 -7.2 -3.84961 | CATTTAAGCACCAAA GACCTATA GCAC TATAGGCC TGAAAAATGAGCATT CLI_2603 2728038 - 2727334 - | sporulation sigma factor SigK TERM 3940 2728465 - 2728448 - R 100 -7.7 -5.4251 | opp_overlap 2728448 TTTATATATAAAAAA GAGCCCT GTTA AGAGCTC ATTTCTTTTTTAACT CLI_2604 2728643 - 2728464 - | hypothetical protein TERM 3941 2728797 - 2728775 - R 70 -4.8 -4.90381 | opp_overlap 2728774 2728776, overlap 2728776 TTCAACATAAGAAAA GGAGAGGTCA TTT TTACCTCTCT ATTAATTTCATCATC TERM 3942 2728796 - 2728776 - R 75 -8.3 -3.53144 | opp_overlap 2728774 2728776, overlap 2728775 TCAACATAAGAAAAG GAGAGGTCA TTT TTACCTCTC TATTAATTTCATCAT TERM 3943 2728776 - 2728796 + r 74 -8.3 -3.36251 | opp_overlap 2728776 2728775, overlap 2728774 TCAACATAAGAAAAG GAGAGGTCA TTT TTACCTCTC TATTAATTTCATCAT CLI_2605 2729225 - 2729088 - | hypothetical protein TERM 3944 2729341 - 2729355 + r 75 -8.6 -3.58726 | opp_overlap 2729341 TAATGCCATACAAAA GAAGAG GTC CTCTTC TTATCTCTCACCGCC TERM 3945 2729355 - 2729341 - R 82 -8.6 -4.55118 | opp_overlap 2729341 TAATGCCATACAAAA GAAGAG GTC CTCTTC TTATCTCTCACCGCC TERM 3946 2729940 - 2729972 + r 100 -15.8 -2.78049 | overlap 2729937 2729943 TAGTAGTTTTCACAG CGAGGGCTTGATAA AAAAA TTATCAAGCCCTTG TCAATTTTAATCAAT TERM 3947 2729943 - 2729969 + r 100 -13.9 -3.53184 | overlap 2729940 2729937 TAGTTTTCACAGCGA GGGCTTGATAA AAAAA TTATCAAGCCC TTGTCAATTTTAATC CLI_2606 2730250 - 2730077 - | hypothetical protein CLI_2607 2730426 - 2730629 + | hypothetical protein TERM 3948 2730651 - 2730690 + T 73 -4.4 -5.17786 | TTAATTAACAAAATA GATGTGGCTACAGTTATT ATAA AGTTATTGTAGTTGCATC TTTTTAATTTTATTA CLI_2608 2731624 - 2730956 - | hypothetical protein TERM 3949 2731677 - 2731644 - R 78 -6.2 -5.0133 | gap 1, opp_overlap 2731644 TATCCTCCTAAAAAA CACCTCTTAAATCTG ATATA CA-ATTTGAGAGGTG TTTTTTTATTTATTT TERM 3950 2731644 - 2731677 + r 100 -8.4 -6.11392 | gap 1, opp_overlap 2731644 TATCCTCCTAAAAAA CACCTCTTAAATCTG ATATA CA-ATTTGAGAGGTG TTTTTTTATTTATTT CLI_2609 2732179 - 2731703 - | hypothetical protein CLI_2611 2732668 - 2732784 + | hypothetical protein TERM 3951 2732897 - 2732914 + T 71 -5.7 -4.55661 | opp_overlap 2732900, overlap 2732883 2732881 GGTAAATCTCTTAAT TTACTAT TGTT ATAGTAA TCTTTTTTTATTACT CLI_2612 2733518 - 2733234 - | hypothetical protein CLI_2613 2734332 - 2733529 - | hypothetical protein CLI_2614 2735116 - 2734313 - | recombinase CLI_2615 2735843 - 2735995 + | hypothetical protein CLI_2616 2737883 - 2736213 - | penicillin-binding protein TERM 3952 2736361 - 2736375 + g 71 -8.6 -2.78933 | opp_overlap 2736357 2736360, overlap 2736367 AATCCTACAAACCAG GCATCT GAA AGATGC TCCATTTTACCTTTA TERM 3953 2736739 - 2736759 + g 73 -9.1 -2.65993 | overlap 2736743 TCTCCTTTTTCCGTT TGAATAGCA CCC TGCTGTTCA TAGTGTAAATCTAAT TERM 3954 2736941 - 2736966 + g 77 -7.1 -4.35042 | gap 1, opp_overlap 2736945 2736946 2736949, overlap 2736946 2736947 ATTCTCCAGTACATT TAAAGCTATCCT TTA AGGATA-CTTTA TTATTTTCTAATGCA TERM 3955 2737928 - 2737892 - R 100 -10.4 -5.19328 | opp_overlap 2737887 2737892 ATCTCATAATAAAAA CACCTCATTTTAGCTA AATTA TAACCAAAATAAGGTG TTTTATTCTAAATTA udk 2738589 - 2737969 - | uridine kinase TERM 3956 2738712 - 2738739 + r 80 -5.9 -5.13354 | opp_overlap 2738715 TTTCTTTCTTCATAC TAATATATAAA TATGTT TTTATATATTA TTTATTTTTTATAAG CLI_2618 2739963 - 2738737 - | U32 family peptidase TERM 3957 2739927 - 2739945 + g 73 -3.8 -5.27779 | overlap 2739930 TTTCTAAATTCCCTG CTGGAGCT AAA AGTTCTGG TTTTTTCATATTAAG CLI_2619 2740612 - 2739956 - | O-methyltransferase family protein CLI_2620 2741726 - 2740695 - | hypothetical protein TERM 3958 2741755 - 2741783 + r 79 -8.9 -3.70068 | opp_overlap 2741755 2741759, overlap 2741762 ATAGGTTAATATAGA CAAACAACCAGCT CTA AGCTAGTTGTTCG TTTAGAATTATAATG TERM 3959 2741783 - 2741755 - R 95 -13.3 -3.10513 | opp_overlap 2741755 2741762, overlap 2741759 ATAGGTTAATATAGA CAAACAACCAGCT CTA AGCTAGTTGTTCG TTTAGAATTATAATG TERM 3960 2741779 - 2741759 - R 95 -10.5 -4.21343 | opp_overlap 2741755 2741762, overlap 2741755 GTTAATATAGACAAA CAACCAGCT CTA AGCTAGTTG TTCGTTTAGAATTAT typA 2743630 - 2741804 - | GTP-binding protein TypA TERM 3961 2741922 - 2741934 + g 70 -4.1 -4.87665 | opp_overlap 2741921, overlap 2741921 2741923 ACAAATTCAAGACAT TGTTC TAG GGACA TTTTTGTCACTGGAA TERM 3962 2741923 - 2741950 + g 73 -9.2 -2.65279 | opp_overlap 2741921, overlap 2741922 2741921 CAAATTCAAGACATT GTTCTAGGGACA TTTT TGTCACTGGAAC TAACTTTAAAGCTTC TERM 3963 2743862 - 2743883 + r 81 -10.3 -2.62513 | opp_overlap 2743862, overlap 2743861 ATTTACTCAAAAAAA TTGGATACT TCCT AGTATCCAA CTTGGTTCACCTTAT TERM 3964 2743883 - 2743862 - R 100 -10.3 -5.47821 | opp_overlap 2743861 2743862 ATTTACTCAAAAAAA TTGGATACT TCCT AGTATCCAA CTTGGTTCACCTTAT CLI_2622 2745985 - 2744276 - | RNA-metabolizing metallo-beta-lactamase family protein TERM 3965 2745051 - 2745067 + g 72 -8.1 -3.25223 | TCTCCTTGACTTCCT GTAGTTA TTA TAACTAC TTGGTCATCTGGATA TERM 3966 2745083 - 2745113 + g 80 -2.1 -5.77632 | gap 1, overlap 2745085 TTGGTCATCTGGATA TTTATTTAT-AGCA TCTA TGCTTATAAATATA TTTTTTTCTGCTTTT CLI_2623 2746485 - 2746033 - | FUR family transcriptional regulator CLI_2624 2746861 - 2746607 - | hypothetical protein CLI_2625 2747288 - 2746875 - | Holliday junction resolvase-like protein TERM 3967 2747401 - 2747385 - R 75 -6.6 -4.52589 | TCTCTTTATACAAAA CTCCTA TTGCG TAGGAG TAAGCGATTCACACC TERM 3968 2747464 - 2747489 + r 100 -13.5 -5.75822 | opp_overlap 2747464 2747470, overlap 2747470 TTTCCATATTTAAAA TAAAAATGCCC TACA GGGCATTTTTA TTTTTTTAATTTATC TERM 3969 2747489 - 2747464 - R 100 -13.5 -4.2349 | opp_overlap 2747464 2747470, overlap 2747470 TTTCCATATTTAAAA TAAAAATGCCC TACA GGGCATTTTTA TTTTTTTAATTTATC TERM 3970 2747470 - 2747483 + r 100 -8.1 -5.86609 | opp_overlap 2747464 2747470, overlap 2747464 TATTTAAAATAAAAA TGCCC TACA GGGCA TTTTTATTTTTTTAA TERM 3971 2747483 - 2747470 - R 100 -8.1 -5.48213 | opp_overlap 2747470 2747464, overlap 2747464 TATTTAAAATAAAAA TGCCC TACA GGGCA TTTTTATTTTTTTAA CLI_2626 2747746 - 2747495 - | hypothetical protein alaS 2750500 - 2747861 - | alanyl-tRNA synthetase TERM 3972 2750560 - 2750544 - R 87 -3.7 -6.17268 | overlap 2750545 TTACAATAAAAAAAA CCTTCAA TCC CTAAAGG GACGAAAGTTATATT CLI_2628 2752024 - 2750996 - | hypothetical protein CLI_2629 2752525 - 2752037 - | PRC-barrel domain-containing protein TERM 3973 2752654 - 2752621 - R 100 -9.8 -5.52384 | opp_overlap 2752628 2752644, overlap 2752628 GTTTTATCAAAAAAA TAAAAAATACCCTC TCTAAT GAGGGTATTTTTAA AATATCTTATATAAA TERM 3974 2752628 - 2752647 + r 83 -7.9 -4.6644 | opp_overlap 2752621 2752628, overlap 2752644 CAAAAAAATAAAAAA TACCCTC TCTAAT GAGGGTA TTTTTAAAATATCTT TERM 3975 2752647 - 2752628 - R 100 -7.9 -6.12458 | opp_overlap 2752628 2752644, overlap 2752621 CAAAAAAATAAAAAA TACCCTC TCTAAT GAGGGTA TTTTTAAAATATCTT CLI_2630 2753135 - 2752707 - | putative iron-sulfur cluster assembly protein iscS-2 2754330 - 2753137 - | cysteine desulfurase CLI_2632 2754769 - 2754323 - | rrF2 family protein CLI_2633 2756239 - 2754989 - | recombination factor protein RarA TERM 3976 2756287 - 2756259 - R 86 -7.5 -4.7373 | opp_overlap 2756259 TCACCTCACTAAAAA GACTTTAACTCTC ATT GTAAGTTAAAGCC CTTGTTTTATCAAGT TERM 3977 2756372 - 2756342 - R 89 -9.8 -3.5511 | opp_overlap 2756341 2756342 2756344, overlap 2756340 2756345 TTTCATCTATAAACA GAGTTCTTAGGAGT TTT ACTCCTTAGAAGTC GTTATCCTTTAGGGG TERM 3978 2756342 - 2756372 + r 79 -9.8 -2.75769 | opp_overlap 2756342 2756340 2756345, overlap 2756341 2756344 TTTCATCTATAAACA GAGTTCTTAGGAGT TTT ACTCCTTAGAAGTC GTTATCCTTTAGGGG TERM 3979 2756369 - 2756345 - R 79 -10.1 -2.60511 | opp_overlap 2756344 2756342 2756341, overlap 2756342 2756340 CATCTATAAACAGAG TTCTTAGGAGT TTT ACTCCTTAGAA GTCGTTATCCTTTAG hisK 2757356 - 2756589 - | hypothetical protein TERM 3980 2757400 - 2757430 + r 100 -14.9 -3.62522 | gap 1, opp_overlap 2757393, overlap 2757401 TAAACGGAGTTCTTG GCTTCAG-GGGAGT TTTT ACTCCCTCTGAAGC TTATTAACAGAATTC TERM 3981 2757435 - 2757474 + r 73 -8.8 -2.90615 | gap 1, opp_overlap 2757393 2757443, overlap 2757439 2757440 2757442 CCCTCTGAAGCTTAT TAACAGAATTCTTAGGAGT TTT ACTCCTTAGAAGTC-GTTA TCCTTTAGGGGAAAT TERM 3982 2757440 - 2757470 + r 79 -9.8 -2.75769 | opp_overlap 2757443, overlap 2757439 2757435 2757442 TGAAGCTTATTAACA GAATTCTTAGGAGT TTT ACTCCTTAGAAGTC GTTATCCTTTAGGGG TERM 3983 2757467 - 2757443 - R 90 -10.1 -3.71552 | opp_overlap 2757442 2757440 2757439 2757435 AGCTTATTAACAGAA TTCTTAGGAGT TTT ACTCCTTAGAA GTCGTTATCCTTTAG TERM 3984 2757651 - 2757639 - R 73 -3.5 -5.51402 | overlap 2757650 ATATAGGTAAAAAAA TAATT TTA AATTA ATATCTATATTATAC CLI_2635 2758630 - 2757722 - | auxin efflux carrier family protein TERM 3985 2757878 - 2757909 + g 78 -10.4 -2.74563 | opp_overlap 2757877 TAATATTACACATAT TTCTAGTAAAAGCT TGTC AGCTTTTACTACAA TCATTAAAATATAAA TERM 3986 2758721 - 2758688 - R 82 -5.5 -5.45802 | gap 1, opp_overlap 2758688 2758709, overlap 2758689 TTTTCAAAAGAAAAA TCCCCCT-TTTTATTA TTA TACTAAAAAAGGAGGA TCTTTTTATATGTTA TERM 3987 2758719 - 2758689 - R 71 -7 -3.86397 | opp_overlap 2758688 2758709, overlap 2758688 TTTCAAAAGAAAAAT CCCCCTTTTTATTA TTA TACTAAAAAAGGAG GATCTTTTTATATGT CLI_2636 2759604 - 2758738 - | DegV family protein TERM 3988 2760152 - 2760166 + G 70 -5 -4.57353 | CCAAAGAACATTGCG TTGCTT GTG AGGCAA TTTTATCTAATGAAA CLI_2637 2759932 - 2760516 + | hypothetical protein TERM 3989 2760620 - 2760590 - T 95 -12.8 -3.63046 | opp_overlap 2760595, overlap 2760595 ATTATAAGTATATAA TAAAAGCAGGAATT TTC AATTCCTGCTTTTT AATTTACACTAAATT TERM 3990 2760595 - 2760615 + T 100 -12.7 -4.99134 | opp_overlap 2760590 2760595 AAGTATATAATAAAA GCAGGAATT TTC AATTCCTGC TTTTTAATTTACACT TERM 3991 2760615 - 2760595 - T 100 -12.7 -4.86822 | opp_overlap 2760595, overlap 2760590 AAGTATATAATAAAA GCAGGAATT TTC AATTCCTGC TTTTTAATTTACACT TERM 3992 2760664 - 2760646 - T 72 -6 -4.47307 | overlap 2760647 2760660 AAATTAATATGAAAA CCTCCTAT TAC ATAGGAGT AAGCCACTCACACCA TERM 3993 2760663 - 2760647 - T 80 -9.5 -3.26758 | overlap 2760646 2760660 AATTAATATGAAAAC CTCCTAT TAC ATAGGAG TAAGCCACTCACACC TERM 3994 2760677 - 2760693 + T 76 -9.5 -2.93335 | opp_overlap 2760660, overlap 2760676 AGTAAGCCACTCACA CCAAATC GTA GATTTGG GTTCTATTTATACGA TERM 3995 2760728 - 2760711 - T 78 -8.5 -3.84825 | overlap 2760725 TCTATTTATACGAAA CTCCTAT TTAC ATAGGAG TAAGCGACTCACACC CLI_2638 2761757 - 2760768 - | ornithine cyclodeaminase TERM 3996 2761815 - 2761766 - R 71 -8.3 -3.05709 | opp_overlap 2761766 2761798, overlap 2761765 2761763 TAAGCATAAAAATAC CTCCATAATATAATATTAAAC TCTTATAT ATATAATATTACATTATGGAG TATTATTAAATAGAA CLI_2639 2763246 - 2761879 - | sodium:alanine symporter family protein TERM 3997 2762992 - 2762965 - G 89 -9.2 -4.24606 | opp_overlap 2762972 AATCCACATCCAAAA TATAGCTCCTGG TCCA CCAGATGCTATA GCTGTTGCAGATCCA TERM 3998 2763623 - 2763603 - R 71 -7.1 -4.015 | opp_overlap 2763600 2763603 2763601, overlap 2763600 GCATTTAGCAAATAA TTTTTAATT ATT AATTAAAAA TCTTATATTATACTG TERM 3999 2763693 - 2763714 + r 75 -3.9 -5.58454 | opp_overlap 2763677 2763675 2763683, overlap 2763675 2763683 AAAAATATTTACAAA TATATTTAT ATTT ATAGATATA TTTTTTTGCTATACA CLI_2640 2765326 - 2763992 - | sodium:alanine symporter family protein TERM 4000 2765072 - 2765045 - G 100 -11.4 -4.24606 | opp_overlap 2765052 AACCCACATCCAAAA TATAGCACCTGG TCCT CCAGCTGCTATA GCCGTAGCAGCTCCT TERM 4001 2765765 - 2765751 - g 70 -4.3 -4.97402 | TAAAATTTAGAAAAA GTGAT GAAAA ATCAC ATATTAGAATTCTTC CLI_2641 2765702 - 2766355 + | hypothetical protein TERM 4002 2766439 - 2766399 - T 100 -7.8 -5.40072 | opp_overlap 2766401 2766437, overlap 2766382 2766401 TTTTTTTGAAAAAAA CACCCTATTTAGTTATAA TTTCT CTTTAACTAAATAGGGTT TTTAATTTATAAAAA TERM 4003 2766437 - 2766401 - T 95 -10.4 -4.34482 | opp_overlap 2766401, overlap 2766399 TTTTTGAAAAAAACA CCCTATTTAGTTATAA TTTCT CTTTAACTAAATAGGG TTTTTAATTTATAAA TERM 4004 2766401 - 2766437 + T 100 -9.7 -5.04601 | opp_overlap 2766399 2766401 TTTTTGAAAAAAACA CCCTATTTAGTTATA ATTTCTC TTTAACTAAATAGGG TTTTTAATTTATAAA CLI_2642 2766970 - 2766494 - | copper amine oxidase domain-containing protein CLI_2643 2771096 - 2767335 - | phosphoribosylformylglycinamidine synthase CLI_2644 2772643 - 2771294 - | MATE efflux family protein TERM 4005 2771661 - 2771647 - G 76 -3.6 -5.42975 | TTATAGAAATAAAAA CCATAA ATA TTATAG CTGATCTTAATGTAA CLI_2645 2775117 - 2772640 - | putative phosphoenolpyruvate synthase TERM 4006 2773003 - 2772991 - G 77 -7.7 -4.15565 | opp_overlap 2772990 CTCATTATCGTAAAA GGCAT CTA ATGCC ATCTGCTCCCAAAGT TERM 4007 2774772 - 2774753 - G 81 -10 -3.53012 | opp_overlap 2774753 2774751 CTTGCTTCCGGTAAA TCCTCGGC TGTT GCCGAAGA TCTTACTGCTAAGTG TERM 4008 2774893 - 2774917 + g 95 -11.7 -3.45764 | opp_overlap 2774899, overlap 2774890 TTCAGTTTTATCCTT TATAGATAAAG TTT CTTTATCTATA TTACTAATTTTTTGT CLI_2646 2775397 - 2775122 - | acyl carrier protein,-like protein CLI_2647 2776941 - 2775403 - | putative acyl-CoA synthetase CLI_2648 2777968 - 2776958 - | putative 3-oxoacyl-(acyl-carrier-protein) synthase III CLI_2649 2778834 - 2777977 - | putative bacT protein CLI_2650 2780704 - 2778875 - | putative nonribosomal peptide synthetase CLI_2651 2781256 - 2780744 - | acetyltransferase TERM 4009 2780873 - 2780889 + g 71 -2.3 -5.48213 | CATAGTATTACTACT TTTTACT AAA AGAAAAA TTTTTATTTTGGGTA TERM 4010 2781107 - 2781123 + g 85 -8.1 -4.61199 | TCTGTATGCTTTTTT CAGTATT TCT AATACTG TTTTATATGTAGGAT CLI_2652 2781508 - 2781260 - | D-alanyl carrier protein,-like protein CLI_2653 2782533 - 2781517 - | hypothetical protein CLI_2654 2783723 - 2782530 - | putative seryl-tRNA synthetase TERM 4011 2782810 - 2782822 + g 90 -4.9 -5.73339 | overlap 2782810 GATTCACCTATAATT TGAAA AAA TTTCA TTTTTTTATAGTTAT TERM 4012 2783395 - 2783417 + g 71 -7.8 -3.50393 | opp_overlap 2783398, overlap 2783398 AAAAACAATCCACTA TAAGCAAAAG ATC CTTTTGCTAA TTCTCTCACATCACC TERM 4013 2783414 - 2783398 - G 79 -9.5 -3.45434 | opp_overlap 2783395 2783398 AACAATCCACTATAA GCAAAAG ATC CTTTTGC TAATTCTCTCACATC TERM 4014 2783398 - 2783414 + g 75 -9.5 -2.89298 | opp_overlap 2783398, overlap 2783395 AACAATCCACTATAA GCAAAAG ATC CTTTTGC TAATTCTCTCACATC CLI_2655 2784482 - 2783742 - | hypothetical protein TERM 4015 2784831 - 2784859 + r 77 -9.1 -3.41422 | opp_overlap 2784831 TTTTTACACAAAAAA CACTTGAAATT CTCCTTA AATTTCAAGTG TTCTAAAATTGTTTT TERM 4016 2784859 - 2784831 - R 100 -9.8 -5.36441 | opp_overlap 2784831 TTTTTACACAAAAAA CACTTGAAATTC TCCTT AAATTTCAAGTG TTCTAAAATTGTTTT TERM 4017 2784897 - 2784932 + r 100 -13.6 -3.78419 | opp_overlap 2784899 2784904, overlap 2784899 2784904 TTTTGTATATCAAAA AATAAAAGGAAGAATG TTTC CATTCTTCCTTTTATC TTATATATTTAATGA TERM 4018 2784930 - 2784899 - R 100 -16.2 -5.21709 | opp_overlap 2784897 2784899 2784904, overlap 2784904 TTGTATATCAAAAAA TAAAAGGAAGAATG TTTC CATTCTTCCTTTTA TCTTATATATTTAAT TERM 4019 2784899 - 2784930 + r 100 -16.2 -3.46611 | opp_overlap 2784899 2784904, overlap 2784897 2784904 TTGTATATCAAAAAA TAAAAGGAAGAATG TTTC CATTCTTCCTTTTA TCTTATATATTTAAT TERM 4020 2784904 - 2784925 + r 100 -11.7 -4.77867 | opp_overlap 2784899 2784904, overlap 2784899 2784897 TATCAAAAAATAAAA GGAAGAATG TTTC CATTCTTCC TTTTATCTTATATAT TERM 4021 2784925 - 2784904 - R 100 -11.7 -5.45813 | opp_overlap 2784904 2784899 2784897, overlap 2784899 TATCAAAAAATAAAA GGAAGAATG TTTC CATTCTTCC TTTTATCTTATATAT argF 2785949 - 2784948 - | ornithine carbamoyltransferase TERM 4022 2785352 - 2785378 + g 70 -5.2 -4.64861 | opp_overlap 2785358, overlap 2785355 CTATTTCTTTGCATT TAGCAACTAATG TAG CATCAGTTGGTA TTTCTTTTGGAGAAA TERM 4023 2786065 - 2786122 + r 100 -15.3 -4.21275 | opp_overlap 2786079, overlap 2786070 TACTACTCTTGTACC TGAAGTTCCATTAATAGCGTCTTTTGC TTTT GCAAGGGATGCTATTAATGCAATTTTA TTTTCGCTAGATTGA arcC 2786988 - 2786044 - | carbamate kinase TERM 4024 2786070 - 2786117 + g 100 -15.2 -5.10933 | opp_overlap 2786079, overlap 2786065 CTCTTGTACCTGAAG TTCCATTAATAGCGTCTTTTGC TTTT GCAAGGGATGCTATTAATGCAA TTTTATTTTCGCTAG TERM 4025 2787301 - 2787342 + r 100 -7.7 -5.51046 | gap 1, opp_overlap 2787301 2787300 2787316 CATAAAGTTTTAAAT TCCT-TCCTAAAAATATAAA AGT TTTATGTTTTTAGAAGAGGA TTTTTTATGTATTTA TERM 4026 2787523 - 2787492 - R 83 -10.9 -2.70404 | opp_overlap 2787489 2787487 2787492, overlap 2787491 2787489 ATATCACAAGAATAT GGGCTTATGCTCC TGTTTT GGGACATAAGCCC TATCTATTATGTGTA TERM 4027 2787492 - 2787523 + r 90 -11 -3.18514 | gap 1, opp_overlap 2787492 2787491 2787489, overlap 2787489 2787487 ATATCACAAGAATAT GGGCTTATGCTCCTG TTT TGGGA-CATAAGCCC TATCTATTATGTGTA glyA 2788793 - 2787552 - | serine hydroxymethyltransferase TERM 4028 2787997 - 2787986 - G 73 -5.8 -4.64861 | opp_overlap 2787985 CTTCCCTAAAACAAA CAGC TTTT GCTG CTATAGTATGCATTA CLI_2659 2788967 - 2789737 + | hypothetical protein CLI_2660 2789734 - 2790222 + | hypothetical protein TERM 4029 2790265 - 2790291 + T 100 -16.8 -3.73953 | opp_overlap 2790265 2790268 2790273, overlap 2790268 2790273 GGGCATGTTATGAAA TAAGGAAAGTGC GTA GCACTTTCCTTA TTTCATAAACATAGT TERM 4030 2790291 - 2790265 - T 100 -16.8 -3.74693 | opp_overlap 2790265 2790268 2790273, overlap 2790268 2790273 GGGCATGTTATGAAA TAAGGAAAGTGC GTA GCACTTTCCTTA TTTCATAAACATAGT TERM 4031 2790268 - 2790288 + T 100 -14.1 -4.0031 | opp_overlap 2790265 2790268 2790273, overlap 2790265 2790273 CATGTTATGAAATAA GGAAAGTGC GTA GCACTTTCC TTATTTCATAAACAT TERM 4032 2790288 - 2790268 - T 100 -14.1 -4.00756 | opp_overlap 2790268 2790265 2790273, overlap 2790265 2790273 CATGTTATGAAATAA GGAAAGTGC GTA GCACTTTCC TTATTTCATAAACAT TERM 4033 2790273 - 2790283 + T 71 -6.8 -4.16371 | opp_overlap 2790268 2790265 2790273, overlap 2790268 2790265 TATGAAATAAGGAAA GTGC GTA GCAC TTTCCTTATTTCATA TERM 4034 2790283 - 2790273 - T 71 -6.8 -4.16371 | opp_overlap 2790273 2790268 2790265, overlap 2790268 2790265 TATGAAATAAGGAAA GTGC GTA GCAC TTTCCTTATTTCATA CLI_2661 2790558 - 2790289 - | hypothetical protein CLI_2662 2791583 - 2790759 - | HAD family hydrolase CLI_2663 2791696 - 2792172 + | putative lipoprotein CLI_2664 2792583 - 2797448 + | hypothetical protein TERM 4035 2797681 - 2797671 - g 78 -4 -5.45726 | opp_overlap 2797671, overlap 2797679 TATAGTTCAAAAAAA TTCT AGA AGAA GCTTTTTGATAACTA TERM 4036 2798595 - 2798612 + G 71 -7.7 -3.40674 | opp_overlap 2798595, overlap 2798594 TACTATAAAATCAGA GTGGCAC TATA GTGCTAC ATTTTTAGATGGTGC CLI_2665 2797525 - 2798748 + | hypothetical protein TERM 4037 2799739 - 2799729 - g 72 -4 -5.01422 | TTATAGAAAAACAAA TTTC TAC GAAA AATATCTATTAGGAA CLI_2666 2798902 - 2799957 + | hypothetical protein TERM 4038 2799988 - 2799944 - f 95 -5.9 -6.15717 | opp_overlap 2799950 2799955 2799958, overlap 2799945 2799948 2799950 TAAATATAAAAAAAA TTAATAGCAAATAAGCTTAAA ATT TTTAGGCTTATTTGCTTATAT CTTATTAATATTTTA TERM 4039 2799987 - 2799945 - f 89 -9.4 -4.2577 | opp_overlap 2799950 2799955 2799958, overlap 2799944 2799948 2799950 AAATATAAAAAAAAT TAATAGCAAATAAGCTTAAA ATT TTTAGGCTTATTTGCTTATA TCTTATTAATATTTT TERM 4040 2799984 - 2799948 - f 100 -11.1 -4.16605 | opp_overlap 2799950 2799955 2799958, overlap 2799945 2799944 2799950 TATAAAAAAAATTAA TAGCAAATAAGCTTAAA ATT TTTAGGCTTATTTGCTT ATATCTTATTAATAT TERM 4041 2799982 - 2799950 - f 100 -13.7 -3.6311 | opp_overlap 2799950 2799955 2799958, overlap 2799948 2799945 2799944 TAAAAAAAATTAATA GCAAATAAGCTTAAA ATT TTTAGGCTTATTTGC TTATATCTTATTAAT TERM 4042 2799950 - 2799982 + F 100 -15.9 -3.77437 | opp_overlap 2799950 2799948 2799945 2799944, overlap 2799955 2799958 TAAAAAAAATTAATA GCAAATAAGCTTAAA ATT TTTAGGCTTATTTGC TTATATCTTATTAAT TERM 4043 2799955 - 2799977 + F 79 -8.6 -4.07968 | opp_overlap 2799950 2799948 2799945 2799944, overlap 2799950 2799958 AAAATTAATAGCAAA TAAGCTTAAA ATT TTTAGGCTTA TTTGCTTATATCTTA CLI_2667 2800296 - 2800988 + | hypothetical protein CLI_2668 2802954 - 2801419 - | putative aminopeptidase 1 CLI_2669 2803880 - 2802945 - | putative magnesium and cobalt transport protein CorA TERM 4044 2804051 - 2804011 - R 90 -7.4 -5.36314 | gap 2, opp_overlap 2804010 2804011, overlap 2804004 TAAAACATTAAAAAA CTAACTA-AATTTTTT-ATG TTT CATTAAAAAATTATAGTTAG CTTTATTGTAAAAAT TERM 4045 2804282 - 2804251 - R 100 -16 -3.62046 | opp_overlap 2804243 GGATTCTGTTAATAA GCTTTAGTGGGAGT AAAA ACTCCCTCTAAAGC CAAGAACTCTGTTTA CLI_2670 2804863 - 2804309 - | 5-formyltetrahydrofolate cyclo-ligase family protein hprK 2805779 - 2804856 - | HPr kinase/phosphorylase CLI_2672 2805999 - 2805811 - | hypothetical protein TERM 4046 2806122 - 2806172 + r 89 -9.5 -4.34789 | gap 1, opp_overlap 2806126 2806129 2806132, overlap 2806119 2806123 2806124 2806126 AAGCCTTTAAAGTAG TA-TAGAATAAGAGACATATTC CCTTTAAA GACTATGTCTCTTATTCTACTA TTCTTTTGTGACTTG TERM 4047 2806123 - 2806170 + r 90 -10.2 -3.76183 | opp_overlap 2806126 2806129 2806132, overlap 2806122 2806119 2806124 2806126 AGCCTTTAAAGTAGT ATAGAATAAGAGACATATTC CCTTTAAA GACTATGTCTCTTATTCTAC TATTCTTTTGTGACT TERM 4048 2806124 - 2806169 + r 100 -13.7 -2.84625 | opp_overlap 2806126 2806129 2806132, overlap 2806123 2806122 2806119 2806126 GCCTTTAAAGTAGTA TAGAATAAGAGACATATTC CCTTTAAA GACTATGTCTCTTATTCTA CTATTCTTTTGTGAC TERM 4049 2806167 - 2806126 - R 93 -13.3 -2.8934 | opp_overlap 2806124 2806123 2806122 2806119 2806126, overlap 2806129 2806132 CTTTAAAGTAGTATA GAATAAGAGACATATTCCC TTTA AAGACTATGTCTCTTATTC TACTATTCTTTTGTG TERM 4050 2806126 - 2806167 + r 90 -11.9 -2.95962 | opp_overlap 2806126 2806129 2806132, overlap 2806124 2806123 2806122 2806119 CTTTAAAGTAGTATA GAATAAGAGACATATTC CCTTTAAA GACTATGTCTCTTATTC TACTATTCTTTTGTG TERM 4051 2806164 - 2806129 - R 83 -9.2 -3.58802 | opp_overlap 2806126 2806124 2806123 2806122 2806119, overlap 2806126 2806132 TAAAGTAGTATAGAA TAAGAGACATATTCCC TTTA AAGACTATGTCTCTTA TTCTACTATTCTTTT CLI_2673 2806907 - 2806170 - | DedA family protein CLI_2674 2807592 - 2806873 - | DedA family protein TERM 4052 2807554 - 2807572 + gr 86 -3.2 -5.91981 | opp_overlap 2807556, overlap 2807556 TAATAAAATAACCAA AATTATAG AAA CTATAATA TTTTTTTTAGATTTT TERM 4053 2807570 - 2807556 - GR 73 -5.8 -4.68479 | opp_overlap 2807554 2807556 ATAAAATAACCAAAA TTATAG AAA CTATAA TATTTTTTTTAGATT TERM 4054 2807556 - 2807570 + gr 73 -5.8 -4.56715 | opp_overlap 2807556, overlap 2807554 ATAAAATAACCAAAA TTATAG AAA CTATAA TATTTTTTTTAGATT CLI_2675 2808846 - 2807701 - | hypothetical protein CLI_2676 2809844 - 2808846 - | hypothetical protein CLI_2677 2810523 - 2809822 - | hypothetical protein CLI_2678 2811197 - 2810523 - | glycosyl transferase, group 2 family protein TERM 4055 2810900 - 2810875 - G 81 -6.3 -5.04325 | TTTAAATCACAAAAA TATATAGGAAA TCCA CCTCCTATATA TCCATCTTTTATAGC CLI_2679 2811384 - 2812358 + | putative thiosulfate sulfurtransferase TERM 4056 2812538 - 2812506 - T 83 -5.9 -5.42514 | gap 1, opp_overlap 2812506 CTATAAATCAAAAAA GTATGTATTAGAGA GCTACA TCT-TAATACATAC TTTTTAATACATACT TERM 4057 2812506 - 2812538 + T 76 -5.9 -4.75372 | gap 1, opp_overlap 2812506 CTATAAATCAAAAAA GTATGTATTAGAGA GCTACA TCT-TAATACATAC TTTTTAATACATACT glpX 2813580 - 2812606 - | fructose 1,6-bisphosphatase II CLI_2681 2814064 - 2814240 + | hypothetical protein TERM 4058 2814233 - 2814220 - T 76 -2.5 -5.83211 | overlap 2814228 TATGAAAATAAAAAA TATAA AAAT TTATA CAAATAAAACAACCA TERM 4059 2814266 - 2814243 - T 91 -8.2 -5.05113 | opp_overlap 2814246, overlap 2814246 TTTATACAAATAAAA CAACCACAGA TTTA TCTGTGGTTT CATTTTCAATAGACA TERM 4060 2814246 - 2814263 + T 95 -9.9 -4.21922 | opp_overlap 2814246 2814243 ATACAAATAAAACAA CCACAGA TTTA TCTGTGG TTTCATTTTCAATAG TERM 4061 2814263 - 2814246 - T 100 -9.9 -4.60302 | opp_overlap 2814246, overlap 2814243 ATACAAATAAAACAA CCACAGA TTTA TCTGTGG TTTCATTTTCAATAG CLI_2682 2814670 - 2814272 - | hypothetical protein TERM 4062 2814960 - 2814942 - R 73 -3.2 -5.48213 | overlap 2814944 2814950 CATCTAAAATAAAAA CATTATAA TCT TTATAAAG AAAAAACTACGAACT TERM 4063 2815002 - 2814967 - R 100 -10.8 -5.72622 | gap 1, opp_overlap 2814967 TTTATAAAGAAAAAA CTACGAACTTAGAA-TA TTA TATTTCTAAGTTCATAG TTTTTTAAATTTAAA TERM 4064 2814967 - 2815002 + r 95 -8.6 -5.22039 | gap 1, opp_overlap 2814967 TTTATAAAGAAAAAA CTACGAACTTAGAATAT TAT AT-TTCTAAGTTCATAG TTTTTTAAATTTAAA CLI_2683 2816293 - 2815124 - | metallo-beta-lactamase family protein/flavodoxin TERM 4065 2815269 - 2815255 - G 74 -8.6 -3.30243 | ATCTATCTGTCATAA GAGAAG GGC CTTCTC CACTCCAACCATAAG TERM 4066 2816565 - 2816526 - R 93 -13.2 -2.90615 | gap 1, opp_overlap 2816533 2816562, overlap 2816529 2816530 2816532 ATTTTCCCTAAAGGA TAAC-GACTTCTAAGGAGT AAA ACTCCTTAGAATTCTGTTA ATAAGCTTTAGAGGG TERM 4067 2816561 - 2816529 - R 91 -10.7 -3.60151 | opp_overlap 2816533, overlap 2816526 2816530 2816532 TTCCCTAAAGGATAA CGACTTCTAAGGAGT AAA ACTCCTTAGAATTCT GTTAATAAGCTTTAG TERM 4068 2816560 - 2816530 - R 100 -14.2 -2.75769 | opp_overlap 2816533, overlap 2816529 2816526 2816532 TCCCTAAAGGATAAC GACTTCTAAGGAGT AAA ACTCCTTAGAATTC TGTTAATAAGCTTTA TERM 4069 2816558 - 2816532 - R 85 -11 -2.92144 | opp_overlap 2816533, overlap 2816530 2816529 2816526 CCTAAAGGATAACGA CTTCTAAGGAGT AAA ACTCCTTAGAAT TCTGTTAATAAGCTT TERM 4070 2816533 - 2816557 + r 100 -14.5 -3.71552 | opp_overlap 2816532 2816530 2816529 2816526 CTAAAGGATAACGAC TTCTAAGGAGT AAA ACTCCTTAGAA TTCTGTTAATAAGCT TERM 4071 2816601 - 2816570 - R 89 -10.2 -3.62522 | opp_overlap 2816562 2816580, overlap 2816571 GAATTCTGTTAATAA GCTTTAGAGGGAGT TTTT ACTCCCTCTGAAGT CAAGAACTCTGTTTA TERM 4072 2816600 - 2816571 - R 100 -13.7 -2.77192 | opp_overlap 2816562 2816580, overlap 2816570 AATTCTGTTAATAAG CTTTAGAGGGAGT TTTT ACTCCCTCTGAAG TCAAGAACTCTGTTT CLI_2684 2817295 - 2816789 - | hypothetical protein TERM 4073 2816861 - 2816840 - G 73 -8.1 -3.494 | opp_overlap 2816840 2816839 TAATGTTTTAGACAA TGCTTTTAC TAAA GCAAAAGCA ATTATACCATCTACT TERM 4074 2817580 - 2817562 - R 84 -8.9 -4.23529 | overlap 2817566 ATATTAATATATAAA CATACCC CATAC GGGTATG GAGGTGGATATATTA TERM 4075 2817964 - 2818014 + r 100 -10.2 -4.50259 | opp_overlap 2817957 2817965 2817971, overlap 2817965 2817971 2818010 TTAATAAATTAATAA TTAAAAAGCTATAAATTTGAAA TTTAATC TTTCAAATTTATAGCTTTTAAC TTTTAATATATTTTT TERM 4076 2818013 - 2817965 - R 100 -13.7 -2.96924 | opp_overlap 2817965 2817964 2817971 2818010, overlap 2817957 2817971 TAATAAATTAATAAT TAAAAAGCTATAAATTTGAAA TTTAATC TTTCAAATTTATAGCTTTTAA CTTTTAATATATTTT TERM 4077 2817965 - 2818013 + r 100 -13.7 -3.27715 | opp_overlap 2817957 2817965 2817971, overlap 2817964 2817971 2818010 TAATAAATTAATAAT TAAAAAGCTATAAATTTGAAA TTTAATC TTTCAAATTTATAGCTTTTAA CTTTTAATATATTTT TERM 4078 2817971 - 2818007 + r 100 -12.7 -4.44277 | opp_overlap 2817965 2817971, overlap 2817965 2817964 ATTAATAATTAAAAA GCTATAAATTTGAAA TTTAATC TTTCAAATTTATAGC TTTTAACTTTTAATA TERM 4079 2818007 - 2817971 - R 100 -12.7 -5.00339 | opp_overlap 2817971 2817965 2817964, overlap 2817965 ATTAATAATTAAAAA GCTATAAATTTGAAA TTTAATC TTTCAAATTTATAGC TTTTAACTTTTAATA TERM 4080 2818323 - 2818296 - R 71 -5.8 -4.55849 | opp_overlap 2818296 2818298 2818300 TAAAATTTAAATAAA TATAGATTATTT TCAT AAATAAACTATA TGTAATCTTAAAAAT CLI_2685 2819210 - 2818347 - | IUNH family nucleoside hydrolase TERM 4081 2818565 - 2818579 + g 79 -5.8 -5.09225 | opp_overlap 2818564 CCCAATTGCAAAAGG CTTTTA TAT TAAAAG TTTTTTCCATAGAAT def-3 2819764 - 2819228 - | peptide deformylase TERM 4082 2819727 - 2819705 - G 71 -8.6 -2.87622 | overlap 2819704 TATTGCCATAATAAC TCTTAAAGCT AAA AGCTTTAAAA CTCCCTCCTTTTTAT TERM 4083 2819892 - 2819882 - g 72 -2.6 -5.35224 | opp_overlap 2819882 TGTATAAAAATAAAA TTTT ATT AAAA CTATTTTTTCCATAT CLI_2687 2819866 - 2820006 + | hypothetical protein TERM 4084 2820231 - 2820200 - T 71 -8.3 -2.99204 | gap 1, opp_overlap 2820207 2820207, overlap 2820207 AATTAAATCTACATA TA-AAAAAGCAGCA TTAGC TGCTGCTTTTTATA CCATATTACTTTGCT TERM 4085 2820220 - 2820207 - T 100 -8.1 -5.4251 | opp_overlap 2820207 2820207, overlap 2820200 TCTACATATAAAAAA GCAGC ATTA GCTGC TGCTTTTTATACCAT TERM 4086 2820207 - 2820220 + T 74 -8.1 -3.32317 | opp_overlap 2820207 2820200, overlap 2820207 TCTACATATAAAAAA GCAGC ATTA GCTGC TGCTTTTTATACCAT TERM 4087 2820207 - 2820223 + T 86 -8 -4.87273 | opp_overlap 2820207 2820200, overlap 2820207 TCTACATATAAAAAA GCAGCA TTAGC TGCTGC TTTTTATACCATATT CLI_2688 2820877 - 2820227 - | V-type ATP synthase subunit D TERM 4088 2820697 - 2820687 - G 72 -4 -5.1675 | opp_overlap 2820687 2820690 CTAGCCATTAAAAAA TCTT TAA AAGA TCCTTCTAATTCCTT CLI_2689 2822291 - 2820906 - | V-type ATP synthase subunit B TERM 4089 2821273 - 2821283 + g 89 -6.8 -5.42131 | AATACATCTATCGGA GGCA TTA TGCC TTTTTTGTATAATTC CLI_2690 2824062 - 2822284 - | V-type ATP synthase subunit A TERM 4090 2823573 - 2823587 + g 71 -7.2 -3.75517 | overlap 2823585 TGAAGTCTCCTTCTT CTATAG TCT CTATAG TTCCTTTTATACCAT TERM 4091 2823769 - 2823791 + g 70 -5.6 -4.21607 | GAAATCTCCAGCCTT GGCTTTTATA GCA TTTAAAGGCC TTTGTATTCCATCGA TERM 4092 2823853 - 2823871 + g 76 -9.6 -2.83715 | opp_overlap 2823848 AACACTTAAAGGTTC CCCAGTAG TTA TTACTGGG TCTCCTGGTGCTAAA CLI_2691 2824384 - 2824076 - | V-type ATP synthase subunit F CLI_2692 2825378 - 2824377 - | V-type ATP synthase subunit C TERM 4093 2825069 - 2825084 + g 78 -6.2 -4.75289 | opp_overlap 2825068 CTTTCTCTAATATAT GTTCTT TTAT AAGAAC TTTTATATTATGATA CLI_2693 2825992 - 2825393 - | V-type ATPase, E subunit CLI_2694 2826507 - 2826031 - | V-type ATP synthase subunit K CLI_2695 2828481 - 2826520 - | V-type ATP synthase subunit I TERM 4094 2828323 - 2828335 + g 70 -6.3 -4.19258 | overlap 2828320 GTCTGATACCAGCTC TGACT GAG AGTCA TTTTGCATAAACTCT CLI_2696 2828794 - 2828468 - | putative V-type ATPase, G subunit TERM 4095 2828532 - 2828563 + g 78 -6.9 -4.62904 | gap 1, opp_overlap 2828532 GCCTTTTCAAATTTA TCCTTAGAAA-TAT TTTTT ATACTTTCTAAGGA TTTTTCCCCCTCTTT TERM 4096 2829086 - 2829100 + r 70 -4.4 -4.97824 | overlap 2829095 TTATAGTATCCTTTT TTTAAA TTT TTTAAA TTTTCTTTAAATTTT CLI_2697 2830802 - 2829126 - | putative B12-binding Fe-S oxidoreductase CLI_2698 2831385 - 2830777 - | hypothetical protein TERM 4097 2830886 - 2830896 + g 70 -4 -4.87803 | overlap 2830891 TACACTCCATCGGAA GATT TTA AATC TTTTATTTCAAAATA TERM 4098 2831025 - 2831039 + g 90 -7.2 -5.65177 | TTTTTATTTTTCCGT TAAAGG TTT CCTTTA TTTTTTTATCAATAT TERM 4099 2831534 - 2831516 - R 100 -6 -6.77747 | opp_overlap 2831516, overlap 2831518 CAATAAAAAAAAAAA TCCTCCTC TTA AAGGAGAA TCTTATTTTTTACCT CLI_2699 2832243 - 2831524 - | putative phospholipase C CLI_2700 2833464 - 2832265 - | hypothetical protein CLI_2701 2836049 - 2833503 - | putative calcium-translocating P-type ATPase, PMCA-type TERM 4100 2836419 - 2836433 + H 70 -4.3 -4.91511 | TAAAATTTAGAAATT TGAAC TTAAT GTTCA TTTTTATGATAAAAT CLI_2702 2836498 - 2838141 + | putative manganese-dependent inorganic pyrophosphatase TERM 4101 2838291 - 2838244 - T 83 -7.5 -4.72631 | opp_overlap 2838244 2838248, overlap 2838239 2838248 ATTAATCTAATAAAA TAAATAGCTATAAAAATAA TTAAAATGCT TTATTTTTGTAGCTATTTA TTTAAATTAAAATAC TERM 4102 2838244 - 2838291 + T 84 -9.7 -3.76125 | opp_overlap 2838244 2838239 2838248, overlap 2838248 ATTAATCTAATAAAA TAAATAGCTATAAAAATAA TTAAAATGCT TTATTTTTGTAGCTATTTA TTTAAATTAAAATAC TERM 4103 2838248 - 2838287 + T 72 -6.1 -4.50159 | opp_overlap 2838248 2838244 2838239, overlap 2838244 ATCTAATAAAATAAA TAGCTATAAAAATAA TTAAAATGCT TTATTTTTGTAGCTA TTTATTTAAATTAAA TERM 4104 2838298 - 2838317 + T 77 -5.2 -5.43866 | opp_overlap 2838298 AGCTATTTATTTAAA TTAAAATA CCTT TATTTTAA TTTTTTTACAGATTA CLI_2703 2838928 - 2838350 - | hypothetical protein TERM 4105 2839201 - 2839151 - R 100 -13.1 -3.61178 | opp_overlap 2839151 2839159, overlap 2839159 CCCATTTATTTCAAA TAAAAAAACTATGAAATAAAAGA ATTTA TCTTGTACTTCATAGTTTTCTTA TTTTAAATTAAATTT TERM 4106 2839151 - 2839201 + r 84 -8.7 -4.30448 | opp_overlap 2839151 2839159, overlap 2839159 CCCATTTATTTCAAA TAAAAAAACTATGAAATAAAAGA ATTTA TCTTGTACTTCATAGTTTTCTTA TTTTAAATTAAATTT TERM 4107 2839193 - 2839159 - R 100 -8.1 -5.95539 | opp_overlap 2839151 2839159, overlap 2839151 TTTCAAATAAAAAAA CTATGAAATAAAAGA ATTTA TCTTGTACTTCATAG TTTTCTTATTTTAAA TERM 4108 2839159 - 2839193 + r 80 -5.9 -5.093 | opp_overlap 2839159 2839151, overlap 2839151 TTTCAAATAAAAAAA CTATGAAATAAAAGA ATTTA TCTTGTACTTCATAG TTTTCTTATTTTAAA CLI_2704 2840012 - 2839221 - | flagellar basal body rod protein FlgG TERM 4109 2839284 - 2839306 + g 77 -8.6 -3.67102 | opp_overlap 2839287, overlap 2839273 2839278 2839287 TATACCTCTTGAACT TAATTCAAAG GCT CTTTGAGTTA TTATCATTTCTGTCA CLI_2705 2840834 - 2840067 - | flagellar basal body rod protein FlgG TERM 4110 2840193 - 2840214 + g 71 -4.5 -4.7219 | overlap 2840195 TTCATTAGTTACATT TACATTAGA TTTT TCTAATGAA TTTTGTCTTACTATA CLI_2706 2841016 - 2840900 - | hypothetical protein CLI_2707 2841732 - 2841094 - | hypothetical protein TERM 4111 2841367 - 2841382 + g 72 -4.8 -4.91459 | CATTATTTTTTTATT TATTTC CTTG GAAATA TTTTTCTCGCTCTTG fliA 2842489 - 2841761 - | RNA polymerase sigma factor for flagellar operon FliA TERM 4112 2842216 - 2842238 + g 79 -7.7 -4.35604 | TATTTAATTTGTCCA TAGCCCCTT TGGAT ATGGGGCTA TTTCTTCTCAATTCA CLI_2709 2843162 - 2842503 - | hypothetical protein flhG 2844037 - 2843177 - | flagellar biosynthesis protein FlhG flhF 2845257 - 2844031 - | flagellar biosynthesis regulator FlhF TERM 4113 2844915 - 2844929 + g 74 -7.2 -4.0127 | TTTGAAAGCTTTCAC TTTTGG ATT CCAAAA TTTCCTTATAGCTAT TERM 4114 2845148 - 2845132 - G 88 -8.7 -4.37886 | opp_overlap 2845131 2845132 2845134 GGATTTTTTAGAAAA GAGGCCT AAA AAGCCTC CCTTTCTTACTTTTC flhA 2847320 - 2845254 - | flagellar biosynthesis protein FlhA TERM 4115 2845912 - 2845886 - G 71 -8.8 -2.83273 | opp_overlap 2845891, overlap 2845889 TTAAATGAGTAACCA TAACTGTAGTAG GAT CTACCACTGTTA AACCTTTAAGTTCTG TERM 4116 2846170 - 2846182 + g 70 -6.3 -4.08557 | TCAATAGCACATTGT CTTCT TAC AGAAG TTATTCTTTGAAGAA TERM 4117 2846393 - 2846383 - G 72 -6.8 -4.0865 | opp_overlap 2846382, overlap 2846378 TTGAATAAAAGATAA GCAG CCA CTGC ATTAGCTATAGCTAA CLI_2713 2849177 - 2847348 - | bifunctional flagellar biosynthesis protein FliR/FlhB TERM 4118 2847452 - 2847465 + g 76 -6.7 -4.44211 | opp_overlap 2847449 2847452, overlap 2847449 CCTTTTCATATATTA GCCTT GCTA AAGGC TTGTTTTCTATTACA fliQ 2849480 - 2849211 - | flagellar biosynthesis protein FliQ fliP 2850268 - 2849492 - | flagellar biosynthesis protein FliP CLI_2716 2850659 - 2850252 - | flagellar biosynthesis domain-containing protein fliL 2851253 - 2850732 - | flagellar basal body-associated protein FliL motB-2 2851993 - 2851250 - | chemotaxis motB protein motA-2 2852798 - 2851986 - | chemotaxis MotA protein CLI_2720 2853004 - 2852795 - | flagellar protein FlbD TERM 4119 2852821 - 2852843 + g 70 -5.6 -4.24654 | opp_overlap 2852826, overlap 2852826 ACTCCCCCTGTATGC CTAAAGTGAT TAT GTCACTTTTG TATTTTTTAACTTTT TERM 4120 2852826 - 2852838 + g 72 -4.1 -5.06052 | opp_overlap 2852826, overlap 2852821 CCCTGTATGCCTAAA GTGAT TAT GTCAC TTTTGTATTTTTTAA TERM 4121 2853032 - 2853081 + r 91 -10.7 -3.50893 | gap 1, opp_overlap 2853032 2853040 2853068, overlap 2853033 2853040 CTTTATTAGTTAAAG TTTTAAAATTTAAATTTCATGATT TAA AATTG-GAAATTTAAATTTTAAAA TTATAGTCTATACTT TERM 4122 2853158 - 2853198 + r 100 -17.4 -5.28414 | opp_overlap 2853161 2853166 AAATTTTTTTATATT TAATGTAATAGTTAATAG ATAAA CTATTAACTATTACATTA TTTTTATGTTTATTA TERM 4123 2853195 - 2853161 - R 100 -14.7 -3.12351 | opp_overlap 2853158, overlap 2853166 TTTTTTTATATTTAA TGTAATAGTTAATAG ATAAA CTATTAACTATTACA TTATTTTTATGTTTA TERM 4124 2853190 - 2853166 - R 75 -8.8 -3.20164 | opp_overlap 2853158, overlap 2853161 TTATATTTAATGTAA TAGTTAATAG ATAAA CTATTAACTA TTACATTATTTTTAT flgE 2854275 - 2853238 - | flagellar hook protein flgE CLI_2722 2854776 - 2854357 - | flagellar operon protein TERM 4125 2854508 - 2854521 + g 70 -5.3 -4.61852 | CTTCCCTTCTTATCG GCTAT ATTT ATAGC TTTATTTATACTATT flgD 2855612 - 2854791 - | flagellar hook capping protein fliK 2857030 - 2855642 - | flagellar hook-length control protein TERM 4126 2856434 - 2856446 + g 75 -4.9 -5.03994 | AGTTTCTAGCAAATC TTCAT CTA ATGAA TTTTTATCTGTAAGA CLI_2725 2857473 - 2857036 - | flagellar protein FliJ fliI 2858893 - 2857577 - | flagellar protein export ATPase FliI fliH 2859721 - 2858933 - | flagellar assembly protein FliH TERM 4127 2859312 - 2859331 + g 83 -8 -4.60924 | TATTGTGCTTCAGTA TCTAACAA TAAT TTGTTAGA TTTTTGCACCATTTC fliG 2860718 - 2859705 - | flagellar motor switch protein G TERM 4128 2860287 - 2860265 - G 70 -8.4 -3.17714 | opp_overlap 2860258 2860265 GCAAATCTTCAGGAA GGGAGGACAA TAT TTGCCCTGCC TTATCTGATTGCATA fliE 2862635 - 2862321 - | flagellar hook-basal body protein FliE flgC 2863081 - 2862647 - | flagellar basal body rod protein FlgC flgB 2863580 - 2863179 - | flagellar basal body rod protein FlgB TERM 4129 2864146 - 2864117 - R 82 -8.1 -4.46835 | opp_overlap 2864113 2864116 2864117, overlap 2864113 ATAAGCTCAAATAAA GCATCTTTAAT TTATCTTT ATTAAAGATGC AATTTTGTTATTTAG CLI_2733 2865023 - 2864154 - | flagellin CLI_2734 2865521 - 2865153 - | hypothetical protein TERM 4130 2865634 - 2865622 - R 72 -7.7 -3.5394 | opp_overlap 2865611, overlap 2865611 2865610 2865606 2865605 AAAGTCCTTGCTAAA GCAAG AAT CTTGC TCATACAAAACTTAT argH 2867384 - 2866062 - | argininosuccinate lyase TERM 4131 2866290 - 2866304 + g 72 -4.2 -5.03747 | overlap 2866279 ATCCGCTGCTTCTGT GGCATT TAA AAAGCC TTTTTTCACAGATTT argG 2868599 - 2867406 - | argininosuccinate synthase TERM 4132 2868664 - 2868697 + r 76 -6.3 -4.82863 | gap 1, opp_overlap 2868674, overlap 2868664 2868666 CCAGTTTCATTTTTA T-AGGAATCAATTTTC CTA GAAAATTTATTCCTCA TTTGTTTTATAATTA TERM 4133 2868664 - 2868696 + r 72 -7.9 -3.48091 | opp_overlap 2868674, overlap 2868664 2868666 CCAGTTTCATTTTTA TAGGAATCAATTTTC CTA GAAAATTTATTCCTC ATTTGTTTTATAATT TERM 4134 2868666 - 2868694 + r 87 -10.5 -3.28878 | opp_overlap 2868674, overlap 2868664 2868664 AGTTTCATTTTTATA GGAATCAATTTTC CTA GAAAATTTATTCC TCATTTGTTTTATAA TERM 4135 2868814 - 2868784 - R 72 -6.2 -4.53303 | opp_overlap 2868784 2868811, overlap 2868787 TATTTTCACATAAAA CAAGCCATTTATCA TAG TGATAAATGGCAAA TATAGTAATATTAAA TERM 4136 2868811 - 2868787 - R 100 -14.5 -4.38141 | opp_overlap 2868784, overlap 2868784 TTTCACATAAAACAA GCCATTTATCA TAG TGATAAATGGC AAATATAGTAATATT TERM 4137 2868891 - 2868859 - R 100 -12.2 -4.44915 | opp_overlap 2868859 2868862 TAATTATGCACAAAA TAAGCCCTGTTACA TAAAT TGTAACAGAGCCTA TTTACCAAACTATTC TERM 4138 2868859 - 2868891 + r 72 -7.8 -3.55548 | opp_overlap 2868859, overlap 2868862 TAATTATGCACAAAA TAAGCCCTGTTACA TAAAT TGTAACAGAGCCTA TTTACCAAACTATTC TERM 4139 2868862 - 2868888 + r 75 -9.5 -2.60813 | opp_overlap 2868859, overlap 2868859 TTATGCACAAAATAA GCCCTGTTACA TAAAT TGTAACAGAGC CTATTTACCAAACTA CLI_2737 2869231 - 2868893 - | hypothetical protein TERM 4140 2869139 - 2869158 + g 76 -3.6 -5.41941 | overlap 2869141 TACTCTTTTCTTTAA TTCTTTGT CAGT ACAAAGTA TTTTTATTTCATTTA TERM 4141 2869141 - 2869156 + g 72 -6.2 -4.30791 | overlap 2869139 CTCTTTTCTTTAATT CTTTGT CAGT ACAAAG TATTTTTATTTCATT CLI_2738 2869598 - 2869254 - | hypothetical protein TERM 4142 2869906 - 2869954 + r 79 -9 -3.57406 | gap 1, opp_overlap 2869906 2869905 2869908 2869933, overlap 2869905 2869909 ATGTCCCTGGATAAC GATTTCT-AGCTTTAGTGGGAGT AAAA ACTCCCTCTGAAGCCAAGAACTC TGTTTATAATAAAGC TERM 4143 2869954 - 2869906 - R 72 -9 -2.57211 | gap 1, opp_overlap 2869905 2869906 2869909, overlap 2869905 2869908 2869933 ATGTCCCTGGATAAC GATTTCT-AGCTTTAGTGGGAGT AAAA ACTCCCTCTGAAGCCAAGAACTC TGTTTATAATAAAGC TERM 4144 2869909 - 2869951 + r 75 -9.3 -2.61255 | gap 1, opp_overlap 2869908 2869906 2869905 2869933, overlap 2869906 2869905 TCCCTGGATAACGAT TTCT-AGCTTTAGTGGGAGT AAAA ACTCCCTCTGAAGCCAAGAA CTCTGTTTATAATAA cls 2871388 - 2869958 - | cardiolipin synthetase TERM 4145 2871757 - 2871746 - g 71 -5.8 -4.4261 | opp_overlap 2871746 TGCGTAACATTAAAA CTGC CTTA GCAG TTACTCTTGCTATAT TERM 4146 2871810 - 2871825 + G 73 -9 -3.08294 | overlap 2871809 AGATTCTCCTTTTTA TGCAGC CATT GCTGCA GTTATTTCTATGCAA TERM 4147 2872456 - 2872440 - g 71 -2.3 -5.38549 | opp_overlap 2872440 2872448, overlap 2872443 2872448 GTTAAATAATAAAAA TTATGAA AGA TTCAAAA ATTTGTATCATTTAC CLI_2740 2871715 - 2872605 + | hypothetical protein TERM 4148 2872666 - 2872622 - T 86 -9 -4.45544 | opp_overlap 2872622 2872629, overlap 2872629 GTTTAGTAATTAAAA TAAAAAAGTACTTTTAATCA ATAAA TAACTAAAAGTACTTTTATA TATATCTCTTCTACT TERM 4149 2872659 - 2872629 - T 95 -7.1 -5.85244 | opp_overlap 2872622 2872629, overlap 2872622 AATTAAAATAAAAAA GTACTTTTAATCA ATAAA TAACTAAAAGTAC TTTTATATATATCTC CLI_2741 2872921 - 2872736 - | hypothetical protein TERM 4150 2873208 - 2873183 - R 80 -6.9 -5.00027 | AGTAAAAATATAAAA GAGAACCGCCA TTTT TAACGATTCTC TTTACATTTATTCCT CLI_2742 2873665 - 2873216 - | VanZ family protein CLI_2743 2875346 - 2873916 - | polysaccharide biosynthesis protein TERM 4151 2874944 - 2874933 - G 82 -4.4 -5.57396 | ATAATTAATAAAAAA CAGT TTAA ACTG TTGGAAAATAGCAAT CLI_2744 2876303 - 2875386 - | NAD-dependent epimerase/dehydratase family protein CLI_2745 2877399 - 2876332 - | neuB family protein CLI_2746 2879092 - 2877431 - | cytidyltransferase-like protein TERM 4152 2877817 - 2877833 + g 87 -2.3 -6.15717 | TATTTTTAAAATTCT TATACTT TTC ATGTATA TTTTTTTTATCTTTG TERM 4153 2878947 - 2878963 + g 74 -2.3 -5.65513 | opp_overlap 2878954 2878957, overlap 2878950 2878952 2878957 GTAGTTATTAATATG TAATCTA TAA TAGATGA TTTTTTTAATTCATC TERM 4154 2879053 - 2879073 + g 85 -2.6 -5.97979 | CTTTGGATCCTCCTC TAGCTG GGATGCATA CAGCTA TTTTTTTATTGTTAT CLI_2747 2880276 - 2879107 - | hypothetical protein TERM 4155 2879776 - 2879788 + g 70 -3.5 -5.02074 | GGATAATACCTCTCC TAAAT AAA ATTTA TTTTTTGCACAATAC CLI_2748 2881263 - 2880310 - | exopolysaccharide biosynthesis protein CLI_2749 2882060 - 2881290 - | exopolysaccharide biosynthesis protein glf 2883160 - 2882060 - | UDP-galactopyranose mutase CLI_2751 2883942 - 2883265 - | putative undecaprenyl-phosphate galactosephosphotransferase TERM 4156 2884115 - 2884150 + r 75 -4 -5.47846 | opp_overlap 2884125, overlap 2884125 AACCTTTATTTTTTT GTTTTTTAAAGTGGTG ATAA CACCACTTTCTTAAGC TTTTATTTTTTACTT TERM 4157 2884125 - 2884140 + r 84 -9 -4.24711 | opp_overlap 2884125, overlap 2884115 TTTTTGTTTTTTAAA GTGGTG ATAA CACCAC TTTCTTAAGCTTTTA TERM 4158 2884140 - 2884125 - R 79 -9 -3.53012 | opp_overlap 2884125 2884115 TTTTTGTTTTTTAAA GTGGTG ATAA CACCAC TTTCTTAAGCTTTTA CLI_2752 2884863 - 2884153 - | capsular exopolysaccharide family protein TERM 4159 2884757 - 2884776 + g 74 -8 -3.73512 | AAAATTACACTTATT TTTTCATC AAAG GATGAAAA TTGTATATTAGTTCT CLI_2753 2885655 - 2884882 - | exopolysaccharide biosynthesis protein CLI_2754 2886343 - 2885660 - | capsular polysaccharide biosynthsis protein CLI_2755 2887340 - 2886378 - | cell envelope-related function transcriptional attenuator TERM 4160 2887114 - 2887124 + g 95 -6.8 -5.9218 | ACAGCATCTGATCTT GAGG GTT CCTC TTTTTTTCTTCTATC TERM 4161 2887167 - 2887152 - G 72 -2.6 -5.38497 | ATCTAAACCAAAAAA TGCTAT ATTT ATAACA TCATCTCCATATGAC TERM 4162 2887731 - 2887771 + r 90 -6.4 -5.80364 | gap 1, opp_overlap 2887731 CTTAATATAAAAAAA TTCTAAGCTTTTTTGAAGT AAAA ACCTCTAAAA-GCTTAGAA TTTTTTTATTAGACT TERM 4163 2887771 - 2887731 - R 100 -8.6 -5.80817 | gap 1, opp_overlap 2887731 CTTAATATAAAAAAA TTCTAAGCTTTTTTGAAGT AAAA ACCTCTA-AAAGCTTAGAA TTTTTTTATTAGACT CLI_2756 2887965 - 2887789 - | hypothetical protein CLI_2757 2888267 - 2888094 - | hypothetical protein CLI_2758 2888555 - 2888388 - | hypothetical protein TERM 4164 2888523 - 2888540 + g 77 -7.1 -4.21465 | CTGTCTTAATTGACT CATTTGT TTAA ACAAATG TTCTTTAGTTTTCAA TERM 4165 2888887 - 2888851 - R 84 -4.7 -5.64421 | gap 1, opp_overlap 2888851 ATTTCAAATAAAAAA GCAATGAAATATAAGA TTATCC TCTTA-ATTTCATAGC TTGTATCTATATTAT TERM 4166 2889025 - 2889000 - R 70 -7.6 -3.3442 | opp_overlap 2889000, overlap 2888998 CATAACATTAGAATA GTCCCCAATT GTTATT AAGTGGGGAC TTTGTTATAATCTTT TERM 4167 2889000 - 2889025 + r 82 -8.3 -4.40181 | opp_overlap 2888998 2889000 CATAACATTAGAATA GTCCCCAATTG TTAT TAAGTGGGGAC TTTGTTATAATCTTT CLI_2759 2889888 - 2889040 - | methyl-accepting chemotaxis protein TERM 4168 2889304 - 2889322 + g 73 -8.9 -3.10715 | overlap 2889297 AGATTCCCCTGCTCT TGCAGCT TCTAT AGCTGCA TTAAGTCCTAATAAA fliC 2890783 - 2889965 - | flagellin TERM 4169 2890085 - 2890071 - G 71 -7.2 -3.72576 | TTTCCCTTTATTAAA TTCATC ATA GATGAA GCCATATCAGAATCC TERM 4170 2891138 - 2891152 + r 71 -5.8 -4.60648 | TCATCTCTTGCCTAT TATCTA TTT TAGATA TTTCTTTAATATTTT TERM 4171 2891949 - 2891984 + r 70 -7.8 -3.45849 | opp_overlap 2891949 ATATATAAAAAACAT CATTGGTTTTTGCTAA TCCT TTAGCTAAAATTAATG TTCTCATAATGTGCC CLI_2764 2892575 - 2892075 - | hypothetical protein TERM 4172 2892479 - 2892489 + g 78 -4 -5.47159 | CTATATATTTTATAT CTTT TTT AAAG TTTTTTATATTAACA CLI_2765 2892725 - 2892600 - | hypothetical protein TERM 4173 2893977 - 2893946 - R 90 -6 -5.84381 | opp_overlap 2893946 CCATTAACAAAAAAA TCCTAAGCTAGTGT AATT ATACTAACTTAAGA TTTTTAATTCTACTT CLI_2767 2894441 - 2894190 - | hypothetical protein CLI_2769 2896202 - 2895105 - | aminotransferase TERM 4174 2895758 - 2895770 + g 77 -4.9 -5.18561 | TAGCATCCTCTATTA CATAA AGA TTATG TTTTTTAGCTATTTC CLI_2770 2897271 - 2896279 - | polysaccharide biosynthesis protein CLI_2771 2897935 - 2897297 - | hexapeptide repeat-containing transferase CLI_2772 2898619 - 2897954 - | N-acetylglucosaminylphosphatidylinositol deacetylase family protein CLI_2773 2899334 - 2898624 - | putative N-acylneuraminate cytidylyltransferase CLI_2774 2900450 - 2899359 - | hypothetical protein CLI_2775 2901471 - 2900440 - | NeuB family protein CLI_2776 2902183 - 2901497 - | putative methyltransferase TERM 4175 2901597 - 2901607 + g 72 -2.6 -5.49729 | ATATGAAATCCAGTC TTAT TAT ATAA TTTTTTTAAATCATT CLI_2777 2903352 - 2902198 - | putative UDP-N-acetylglucosamine 2-epimerase CLI_2778 2904461 - 2903385 - | nucleotidyl transferase family protein TERM 4176 2903844 - 2903857 + g 80 -2.3 -5.77677 | AAGTTTTATGCCTCC GGCTG TTCC CATCC TTTTTTGTTCTTTTA CLI_2779 2905000 - 2904653 - | hypothetical protein CLI_2780 2906799 - 2905000 - | hypothetical protein TERM 4177 2906923 - 2906900 - R 100 -10.4 -5.46698 | opp_overlap 2906900 CTTAAAACTAAAAAA GAGCTAGAGA AAAT TCTCTAACTC TTTACATATACTATG TERM 4178 2906900 - 2906923 + r 76 -8.2 -3.73414 | opp_overlap 2906900 CTTAAAACTAAAAAA GAGCTAGAGA AAAT TCTCTAACTC TTTACATATACTATG TERM 4179 2906929 - 2906963 + r 73 -7.4 -4.05788 | opp_overlap 2906932 2906934 2906945, overlap 2906930 2906932 TCTCTAACTCTTTAC ATATACTATGAATAAT TAA ATCATTCATAGTATAA TTTAGTTTAAGGAAA TERM 4180 2906930 - 2906962 + r 87 -10.9 -3.03151 | opp_overlap 2906932 2906934 2906945, overlap 2906929 2906932 CTCTAACTCTTTACA TATACTATGAATAAT TAA ATCATTCATAGTATA ATTTAGTTTAAGGAA TERM 4181 2906960 - 2906932 - R 85 -11.3 -2.88579 | opp_overlap 2906930 2906929 2906932, overlap 2906934 2906945 CTAACTCTTTACATA TACTATGAATAAT TAA ATCATTCATAGTA TAATTTAGTTTAAGG TERM 4182 2906932 - 2906960 + r 74 -9.1 -3.0693 | opp_overlap 2906932 2906934 2906945, overlap 2906930 2906929 CTAACTCTTTACATA TACTATGAATAAT TAA ATCATTCATAGTA TAATTTAGTTTAAGG TERM 4183 2906958 - 2906934 - R 78 -9.5 -2.99319 | opp_overlap 2906932 2906930 2906929, overlap 2906932 2906945 AACTCTTTACATATA CTATGAATAAT TAA ATCATTCATAG TATAATTTAGTTTAA CLI_2781 2907862 - 2907041 - | flagellin TERM 4184 2908121 - 2908164 + r 87 -10.1 -3.3458 | opp_overlap 2908120, overlap 2908114 2908128 TTTTCTCATATAACC TTTATAGTTTATTTTAAAT TGTTTT ATTTAAAATAGACTGTAAA TTGAATTGTTTCATA CLI_2782 2908475 - 2908134 - | hypothetical protein fliD 2910940 - 2908502 - | flagellar hook-associated protein 2 fliS 2911383 - 2910994 - | flagellar protein FliS TERM 4185 2911100 - 2911113 + g 72 -5.3 -4.75472 | ACATCTTTTTTCATA TTAGC TTCT GCTAA TTTTCTTACTATGAA TERM 4186 2911338 - 2911348 + g 70 -4 -4.91459 | opp_overlap 2911338 CCTTTGAAGCAAAAT TAAC ACT GTTA TTTTTATAAGTATTG CLI_2785 2911719 - 2911420 - | hypothetical protein CLI_2786 2912132 - 2911776 - | flagellar protein FlaG csrA 2912366 - 2912148 - | carbon storage regulator TERM 4187 2912213 - 2912231 + g 71 -4.6 -4.76075 | TTTTATTTTCCTCTT GAACTTCA TTA TAAAGTTC TTTTCTTAGTATAGT CLI_2788 2912797 - 2912366 - | flagellar assembly protein FliW flgL 2913827 - 2912865 - | flagellar hook-associated protein 3 flgK 2915710 - 2913845 - | flagellar hook-associated protein FlgK TERM 4188 2914480 - 2914467 - G 74 -5.3 -4.99035 | opp_overlap 2914467 2914465 GCATTTACAGAAAAA GCTAA AGCT TTAGC TAATTTATTTAACTG TERM 4189 2914809 - 2914822 + g 81 -3.8 -5.55664 | GTTACTGTATATTCA CCAG CTTCTC CTGG TTTTTTTCCTGCTGG TERM 4190 2915959 - 2915970 + r 71 -5.8 -4.69326 | opp_overlap 2915951 2915959, overlap 2915951 2915950 GCAGAGACTATATAA GGCT ATAT AGCC TTTTGTCTTGCCTGT CLI_2791 2916391 - 2915987 - | flgN family protein CLI_2792 2916672 - 2916391 - | regulator of flagellin synthesis FlgM TERM 4191 2917085 - 2917037 - R 100 -23.9 -4.07687 | opp_overlap 2917037 2917043, overlap 2917043 ATTTTCTTTTTAAAA TTAAAAGCTATGAATTTAAAATA TTA TATTTTAAATTCATAGCTTTTAA TTTTAACTATTAAAT TERM 4192 2917037 - 2917085 + r 100 -23.9 -4.28656 | opp_overlap 2917037 2917043, overlap 2917043 ATTTTCTTTTTAAAA TTAAAAGCTATGAATTTAAAATA TTA TATTTTAAATTCATAGCTTTTAA TTTTAACTATTAAAT TERM 4193 2917043 - 2917079 + r 100 -18.5 -4.68645 | opp_overlap 2917043 2917037, overlap 2917037 TTTTTAAAATTAAAA GCTATGAATTTAAAATA TTA TATTTTAAATTCATAGC TTTTAATTTTAACTA TERM 4194 2917079 - 2917043 - R 100 -18.5 -4.67038 | opp_overlap 2917037 2917043, overlap 2917037 TTTTTAAAATTAAAA GCTATGAATTTAAAATA TTA TATTTTAAATTCATAGC TTTTAATTTTAACTA fliN 2918421 - 2917261 - | flagellar motor switch protein TERM 4195 2918107 - 2918121 + g 77 -7.2 -4.2349 | opp_overlap 2918089 TAGGTTTTCTCCTAC TATACC ACT GGTATA TTTTACCTCTAGGGC fliM 2919409 - 2918414 - | flagellar motor switch protein FliM CLI_2795 2919832 - 2919437 - | putative chemotaxis protein CheW TERM 4196 2919895 - 2919857 - R 71 -5.4 -4.64861 | overlap 2919858 TCCTCTCAAAATAAA CTATCAGTGCATTAAGAA ACT TGCCTAATGCACCTATAA GTTTTAAACTTTAAG TERM 4197 2919910 - 2919922 + r 72 -4.9 -4.94487 | opp_overlap 2919905, overlap 2919905 AGTTTTAAACTTTAA GAAAT TAA ATTTC TTTTATATTTTATCC cheY 2920291 - 2919932 - | chemotaxis protein CheY cheC 2920918 - 2920319 - | chemotaxis protein CheC cheA 2923019 - 2920944 - | chemotaxis protein CheA cheR 2923802 - 2923032 - | chemotaxis protein methyltransferase CheR TERM 4198 2923120 - 2923094 - G 75 -7.4 -4.1021 | CTTTATAATTATAAA TGCTTTCTGTAG CTC CTACAAAAAGTA AGCCTCCTTTTTTCA TERM 4199 2923130 - 2923148 + g 74 -6.1 -4.45484 | AAAGTAAGCCTCCTT TTTTCAG TGACT CTGAAAA TTTCTTATATATATT cheB 2924881 - 2923817 - | protein-glutamate methylesterase CheB TERM 4200 2924366 - 2924390 + g 73 -3.7 -5.26918 | overlap 2924368 TCCTATAACTACAGC TTCTATTTTTT TTG AAGAAATAGTA TTTTTTATAGGATAT TERM 4201 2924368 - 2924388 + g 72 -6.3 -4.26475 | overlap 2924366 CTATAACTACAGCTT CTATTTTTT TTG AAGAAATAG TATTTTTTATAGGAT cheD 2925392 - 2924904 - | chemoreceptor glutamine deamidase CheD cheW 2925855 - 2925409 - | chemotaxis protein CheW CLI_2803 2927904 - 2925871 - | hypothetical protein CLI_2804 2930112 - 2928157 - | PTS system, glucose family, IIABC component TERM 4202 2929802 - 2929821 + g 76 -7.9 -3.97331 | GTCATATTCTTTTGG GCAGCTA CTTTTA TAGCTGC TTCTTTGGCTGCCTT TERM 4203 2929884 - 2929901 + g 80 -9.9 -3.35371 | opp_overlap 2929886 TTAATTGGCCTACTA TAGCAGC TAAA GCTGCTA TTCCTTCCCCATCTG TERM 4204 2930144 - 2930175 + r 89 -9.6 -4.29493 | opp_overlap 2930152, overlap 2930145 2930152 TAAGCTTGCTTATAG TTTAAAAACCTTGC AAAA GCAAGGTTTTTTAG TTTATATATTTAATA TERM 4205 2930145 - 2930174 + r 90 -10.9 -3.16611 | opp_overlap 2930152, overlap 2930144 2930152 AAGCTTGCTTATAGT TTAAAAACCTTGC AAAA GCAAGGTTTTTTA GTTTATATATTTAAT TERM 4206 2930152 - 2930167 + r 100 -9 -5.4387 | opp_overlap 2930152, overlap 2930145 2930144 CTTATAGTTTAAAAA CCTTGC AAAA GCAAGG TTTTTTAGTTTATAT TERM 4207 2930167 - 2930152 - R 89 -9 -4.64766 | opp_overlap 2930152 2930145 2930144 CTTATAGTTTAAAAA CCTTGC AAAA GCAAGG TTTTTTAGTTTATAT CLI_2805 2931022 - 2930195 - | BglG family transcriptional antiterminator CLI_2806 2932104 - 2931271 - | putative branched-chain amino acid aminotransferase CLI_2807 2932870 - 2932229 - | HAD family hydrolase TERM 4208 2933120 - 2933087 - R 90 -11.9 -3.0352 | opp_overlap 2933092 2933117 2933118, overlap 2933092 TAAAATTAACCAAAG CAAAAGAGCCTCTGT AATA ACAGAGACTCTTTTT ACAATACTATTGTAG TERM 4209 2933092 - 2933115 + r 93 -9.6 -4.63928 | opp_overlap 2933087 2933092 TTAACCAAAGCAAAA GAGCCTCTGT AATA ACAGAGACTC TTTTTACAATACTAT TERM 4210 2933115 - 2933092 - R 100 -11.8 -4.62054 | opp_overlap 2933092, overlap 2933087 TTAACCAAAGCAAAA GAGCCTCTGT AATA ACAGAGACTC TTTTTACAATACTAT CLI_2808 2933531 - 2933127 - | hypothetical protein TERM 4211 2933558 - 2933537 - R 81 -7.3 -4.83615 | opp_overlap 2933538, overlap 2933538 CATCTTTCATAAAAA CTCCTGGTA ATAT TACCAGGAT CTTCACCTCCTTTTT TERM 4212 2933538 - 2933557 + r 85 -10.8 -3.09131 | opp_overlap 2933537 2933538 ATCTTTCATAAAAAC TCCTGGTA ATAT TACCAGGA TCTTCACCTCCTTTT TERM 4213 2933557 - 2933538 - R 91 -10.8 -3.49687 | opp_overlap 2933538, overlap 2933537 ATCTTTCATAAAAAC TCCTGGTA ATAT TACCAGGA TCTTCACCTCCTTTT TERM 4214 2933605 - 2933617 + r 76 -2.7 -5.88061 | opp_overlap 2933605, overlap 2933605 2933606 TACCCTTAAACAGAG CTTTT TAA AAGAG TTTTTTTACTTTTTT TERM 4215 2933761 - 2933719 - R 100 -8.9 -4.91511 | gap 1, overlap 2933721 ATTTTATGATAAAAA TAT-ACCAAGTAAATAATTA ATAT TAACTATTTACTCGGTAATA AAATATTTCTATAGT TERM 4216 2933758 - 2933721 - R 100 -13.1 -4.08042 | overlap 2933719 TTTATGATAAAAATA TACCAAGTAAATAATTA ATAT TAACTATTTACTCGGTA ATAAAATATTTCTAT CLI_2809 2933908 - 2933792 - | hypothetical protein TERM 4217 2934177 - 2934147 - R 80 -9.3 -3.12351 | gap 1, opp_overlap 2934132 2934147 2934149 2934155, overlap 2934155 GCTCTTTATATTTAA TAA-AAAAAGAGCC TTTC GGCTCTTTTTATTA TTGTTCAGCTAATTT TERM 4218 2934147 - 2934177 + r 84 -9.3 -3.67134 | gap 1, opp_overlap 2934147 2934155, overlap 2934132 2934149 2934155 GCTCTTTATATTTAA TAA-AAAAAGAGCC TTTC GGCTCTTTTTATTA TTGTTCAGCTAATTT TERM 4219 2934149 - 2934174 + r 81 -9.1 -3.96068 | opp_overlap 2934147 2934155, overlap 2934132 2934147 2934155 TCTTTATATTTAATA AAAAAAGAGCC TTTC GGCTCTTTTTA TTATTGTTCAGCTAA TERM 4220 2934155 - 2934168 + r 100 -8.1 -5.3798 | opp_overlap 2934155 2934147, overlap 2934132 2934149 2934147 TATTTAATAAAAAAA GAGCC TTTC GGCTC TTTTTATTATTGTTC TERM 4221 2934168 - 2934155 - R 100 -8.1 -5.8187 | opp_overlap 2934132 2934149 2934147 2934155, overlap 2934147 TATTTAATAAAAAAA GAGCC TTTC GGCTC TTTTTATTATTGTTC CLI_2810 2937753 - 2934175 - | pyruvate ferredoxin oxidoreductase TERM 4222 2937810 - 2937790 - R 74 -6.2 -4.57474 | TTAATTTATATAAAA TTTACGGA ATAAA TCCGCAAA ATAATTAACATTTGT TERM 4223 2938268 - 2938251 - R 73 -2.1 -5.73563 | ATTAAAGTAAAAAAA TAATATA TATA TACATTA ACATTCAATAATTTT murG 2939450 - 2938386 - | N-acetylglucosaminyl transferase CLI_2812 2939775 - 2939939 + | hypothetical protein TERM 4224 2940040 - 2940002 - T 83 -7.1 -4.92757 | gap 2, opp_overlap 2940002 GCATTAACAATAAAA GCCCTATTTAATTGTAAAT TTT ATTTAC--CTAAATAGGGC TTTATATATTTTCTA CLI_2813 2942161 - 2940053 - | sensory box histidine kinase TERM 4225 2940359 - 2940371 + g 73 -3.5 -5.186 | overlap 2940364 TTCATCCTTTACTAT TAATT TAA AATTA TTTTTATATATTTTA TERM 4226 2942821 - 2942774 - R 88 -6.7 -5.62288 | gap 1, opp_overlap 2942777 TTAATAAAATAAAAA CAATGACTTTAGCAAGTTTTAT TTTGT ATA-AACTTACTGAAGTCATTA CTATTCCTACTTAGT recJ 2945172 - 2943391 - | single-stranded-DNA-specific exonuclease RecJ CLI_2815 2945363 - 2946181 + | AP endonuclease CLI_2816 2947870 - 2946467 - | NHL repeat-containing protein TERM 4227 2948018 - 2948064 + r 82 -10.3 -2.91912 | gap 1, opp_overlap 2948030 TTTATCCGATGACTA CCCGCTCTAATACTCCCATCTT CTTA AAAATGGGAGTAA-AGAGCGGC TATGTCCCTGGATAA TERM 4228 2948053 - 2948030 - R 85 -10.4 -3.02144 | opp_overlap 2948018 CTACCCGCTCTAATA CTCCCATCTT CTTA AAAATGGGAG TAAAGAGCGGCTATG TERM 4229 2948234 - 2948224 - R 70 -2.6 -5.5353 | GATAGTAACAAAAAA TTTT ATT AAAA GCACTAATTATATGC TERM 4230 2948449 - 2948426 - R 90 -6.8 -5.6473 | opp_overlap 2948426 AGAATATGAAAAAAA CTACACCCTT TATA AAGAATGTAG TAAATTAATTAATTA CLI_2817 2949673 - 2948465 - | M16 family peptidase TERM 4231 2949239 - 2949251 + g 75 -4.9 -5.12707 | TTCTTTTATTCTTCT TTCTT TAA AAGAA TTTTTTAGCATTTGA TERM 4232 2949711 - 2949689 - H 75 -9.4 -2.59431 | opp_overlap 2949689, overlap 2949685 TTTCTCCATAATTTA TATTTTAATC AAA GATTAAAATA TTATCACCTCTCTTA TERM 4233 2949689 - 2949711 + H 82 -9.4 -3.36648 | opp_overlap 2949685 2949689 TTTCTCCATAATTTA TATTTTAATC AAA GATTAAAATA TTATCACCTCTCTTA TERM 4234 2949960 - 2949914 - H 73 -8.9 -2.82623 | gap 1, opp_overlap 2949912 2949915 2949916, overlap 2949911 2949941 GTCCCTGGATAACCA TTTCCTAAGCTTCAGAGGGAGT AAAA ACTTCCTCTGAAGCC-AAGAAC TCTGTTTATATATTA TERM 4235 2949915 - 2949960 + H 74 -8.3 -3.42088 | opp_overlap 2949914 2949911 2949941, overlap 2949912 2949916 TCCCTGGATAACCAT TTCCTAAGCTTCAGAGGGAGT AAAA ACTTCCTCTGAAGCCAAGAAC TCTGTTTATATATTA TERM 4236 2949916 - 2949959 + H 86 -11.8 -2.64168 | opp_overlap 2949914 2949911 2949941, overlap 2949915 2949912 CCCTGGATAACCATT TCCTAAGCTTCAGAGGGAGT AAAA ACTTCCTCTGAAGCCAAGAA CTCTGTTTATATATT TERM 4237 2950154 - 2950196 + H 78 -7.5 -4.20769 | gap 1, opp_overlap 2950164 2950186, overlap 2950181 GATGAACCACCTCAT TTATTTCA-AATATTATACT TTAA AGTATAATATTATGATATAA TTTATGTTAAAATAT TERM 4238 2950185 - 2950164 - H 72 -7.5 -3.61178 | opp_overlap 2950154 2950181 CTCATTTATTTCAAA TATTATACT TTAA AGTATAATA TTATGATATAATTTA CLI_2818 2950244 - 2950654 + | hypothetical protein CLI_2819 2950722 - 2951273 + | DJ-1 family protein TERM 4239 2951464 - 2951425 - T 73 -8.8 -2.90615 | gap 1, opp_overlap 2951432 2951461, overlap 2951428 2951429 2951431 ATTTCCCCTAAAGGA TAAC-GACTTCTAAGGAGT AAA ACTCCTAAGAATTCTGTTA ATAAGCTTCAGAGAG TERM 4240 2951459 - 2951429 - T 79 -9.8 -2.75769 | opp_overlap 2951432, overlap 2951428 2951425 2951431 CCCCTAAAGGATAAC GACTTCTAAGGAGT AAA ACTCCTAAGAATTC TGTTAATAAGCTTCA TERM 4241 2951432 - 2951456 + T 90 -10.1 -3.71552 | opp_overlap 2951431 2951429 2951428 2951425 CTAAAGGATAACGAC TTCTAAGGAGT AAA ACTCCTAAGAA TTCTGTTAATAAGCT TERM 4242 2951500 - 2951469 - T 100 -18.2 -3.62522 | opp_overlap 2951461 GAATTCTGTTAATAA GCTTCAGAGAGAGT CTTT ACTCCCTCTGAAGC CAAGAACTCTGTTTA glpP 2952292 - 2951729 - | glycerol uptake operon antiterminator regulatory protein CLI_2821 2955211 - 2952341 - | DNA topoisomerase IV subunit A TERM 4243 2955277 - 2955255 - R 83 -9.3 -3.64103 | opp_overlap 2955254 2955255 TATTTACATGGCAAA GGCTAAATA TATAT TATTTAGCC CTTTTATCTAAAACT TERM 4244 2955255 - 2955277 + r 82 -9.3 -3.315 | opp_overlap 2955255, overlap 2955254 TATTTACATGGCAAA GGCTAAATA TATAT TATTTAGCC CTTTTATCTAAAACT CLI_2822 2957240 - 2955285 - | DNA topoisomerase IV subunit B TERM 4245 2955737 - 2955772 + g 70 -4.2 -4.99435 | opp_overlap 2955737 2955739, overlap 2955766 CTTCCTCTTTATAAT TATCTAATACACCTGT ACCT ATAGCTGTATTAAATA TTTTTAATTCTTCAC TERM 4246 2956537 - 2956547 + g 70 -4 -4.87803 | opp_overlap 2956519 AAAAGACCTCTTTCA GAAT GAT ATTC TTTTATTTCCGGCTC TERM 4247 2957527 - 2957496 - R 100 -10.4 -5.22039 | opp_overlap 2957501 TTCAAACTTAAAAAA TAATATGCTGATAT ATAA ATATCTGCATATTA AAATAGTATATATAT CLI_2823 2957984 - 2957607 - | hypothetical protein TERM 4248 2958022 - 2958034 + H 80 -3.5 -5.81412 | TTCTCTTACTATCTT TATAT GCT ATATA TTTTTTTTGGATAGA TERM 4249 2958138 - 2958111 - H 72 -3.7 -5.31519 | opp_overlap 2958112 2958127, overlap 2958112 ATATGTAAACAAAAA CTTTAAAATTT TTATAT AAATTTTAAAA TTAATAAAATTTATT TERM 4250 2958415 - 2958426 + G 70 -4.4 -4.98857 | opp_overlap 2958415 CTGTCATAAAAAAAT TAGG CAAG CCTA TTTTTATAATTGCAT TERM 4251 2958550 - 2958525 - g 71 -8.9 -2.73994 | overlap 2958509 ACTGCCCTAATATTA GGAGCAGTAGC CTCT GCGACAGCTCC AGCGGCTACAGTAAT CLI_2824 2958171 - 2959343 + | monovalent cation:proton antiporter-2 (CPA2) family protein TERM 4252 2959634 - 2959646 + G 71 -5.5 -4.42513 | opp_overlap 2959634 AGATATAGATAATAA GCCTG GTA TAGGC TTTATGTTTGTGCTT CLI_2825 2959356 - 2959706 + | hypothetical protein TERM 4253 2960204 - 2960218 + G 76 -5 -5.15682 | AACTAATTTTATTAC TAGCTG TTA CAGTTA TTTTATTTATATTTT CLI_2826 2960167 - 2960403 + | hypothetical protein CLI_2827 2960423 - 2961316 + | polysaccharide deacetylase family protein TERM 4254 2961356 - 2961300 - T 93 -9.2 -4.6644 | gap 2, opp_overlap 2961309 2961314, overlap 2961305 2961314 AAGATACTCCAAAAA CAAG-CT-TTACAAAATAAGGAAAGTGC TAT ACACTTTCCTTATTTTGTTACATTCTTG GAGTTTTTTCATTCT TERM 4255 2961349 - 2961305 - T 100 -13.9 -2.54233 | opp_overlap 2961309 2961314, overlap 2961300 2961314 ACTCCAAAAACAAGC TTTACAAAATAAGGAAAGTGC TAT ACACTTTCCTTATTTTGTTAC ATTCTTGGAGTTTTT TERM 4256 2961309 - 2961345 + T 100 -18.4 -3.29013 | opp_overlap 2961305 2961300 2961314, overlap 2961314 CAAAAACAAGCTTTA CAAAATAAGGAAAGTG CTATA CACTTTCCTTATTTTG TTACATTCTTGGAGT TERM 4257 2961314 - 2961340 + T 100 -12.5 -4.74539 | opp_overlap 2961305 2961300 2961314, overlap 2961309 ACAAGCTTTACAAAA TAAGGAAAGTG CTATA CACTTTCCTTA TTTTGTTACATTCTT TERM 4258 2961340 - 2961314 - T 100 -13.2 -4.40572 | opp_overlap 2961314 2961309, overlap 2961305 2961300 ACAAGCTTTACAAAA TAAGGAAAGTGC TAT ACACTTTCCTTA TTTTGTTACATTCTT CLI_2828 2962684 - 2961395 - | hypothetical protein galE 2963702 - 2962722 - | UDP-glucose 4-epimerase TERM 4259 2964063 - 2964079 + r 80 -9.5 -3.20751 | overlap 2964061 ATTATACTAATTTTT GTGCAAA AGC TTTGCAC TCTTCCATTGTTGAA CLI_2830 2964465 - 2964049 - | flavodoxin TERM 4260 2964572 - 2964558 - R 82 -4.4 -5.80817 | overlap 2964565 GCTAATATAAAAAAA TAAAAA GTA TTTTTA AATAAAATAAATAGT CLI_2831 2966154 - 2964733 - | MATE efflux family protein TERM 4261 2964898 - 2964882 - G 77 -8.1 -3.73509 | ATATTAAATCTGAAA TTGGATA AGC TATCCAA GCTCCCATGATATCA TERM 4262 2966548 - 2966533 - R 100 -7.6 -6.08342 | opp_overlap 2966532 2966533 2966546 CAATAAACAAAAAAA CACCTT ATTT AAGGTG CTTTTGTACTTTTTG TERM 4263 2966533 - 2966548 + r 70 -7.6 -3.41907 | opp_overlap 2966533, overlap 2966532 2966546 CAATAAACAAAAAAA CACCTT ATTT AAGGTG CTTTTGTACTTTTTG TERM 4264 2966788 - 2966759 - R 85 -8.1 -4.66609 | opp_overlap 2966774, overlap 2966761 GATTTTATCTAAAAA TATATTTATACTC TTTG GAGTATAAATAAA AATGCTCCATATCCT TERM 4265 2966786 - 2966761 - R 95 -10.7 -3.94812 | opp_overlap 2966774, overlap 2966759 TTTTATCTAAAAATA TATTTATACTC TTTG GAGTATAAATA AAAATGCTCCATATC CLI_2832 2968830 - 2966764 - | AraC family transcriptional regulator TERM 4266 2969578 - 2969560 - g 71 -4.6 -4.72201 | opp_overlap 2969560 CGTTATAAAAAATAA TCCTAAAA TAT TTATAGGA TATTCTGATACCACT CLI_2833 2969231 - 2970268 + | LD-carboxypeptidase family protein TERM 4267 2970395 - 2970348 - T 82 -8.9 -4.18494 | opp_overlap 2970350 2970352 2970354 TACTTTTAGTGAAAA TAGATAGCTATAAAAATAA TTAGTATTCC TTATTTTTATGGCTATCTA TTAAACAAAAGTATT TERM 4268 2970350 - 2970393 + T 78 -9.3 -3.01924 | opp_overlap 2970348, overlap 2970352 2970354 CTTTTAGTGAAAATA GATAGCTATAAAAATAA TTAGTATTCC TTATTTTTATGGCTATC TATTAAACAAAAGTA glpK 2972195 - 2970699 - | glycerol kinase CLI_2835 2973151 - 2972447 - | glycerol uptake facilitator protein CLI_2836 2973686 - 2974006 + | hypothetical protein TERM 4269 2974035 - 2974072 + T 72 -5.1 -5.04175 | gap 1, opp_overlap 2974036, overlap 2974036 TTTTAATATAAAAAA ATGCTAGTAAT-ATTAAC TTA GTTATTAATTACTAGCAC TTTTTATATCATTAA TERM 4270 2974071 - 2974036 - T 100 -8.6 -5.80817 | gap 1, opp_overlap 2974036 2974035 TTTAATATAAAAAAA TGCTAGTAAT-ATTAAC TTA GTTATTAATTACTAGCA CTTTTTATATCATTA TERM 4271 2974036 - 2974071 + T 75 -8.6 -3.61421 | gap 1, opp_overlap 2974036, overlap 2974035 TTTAATATAAAAAAA TGCTAGTAAT-ATTAAC TTA GTTATTAATTACTAGCA CTTTTTATATCATTA CLI_2837 2974816 - 2974118 - | VanZ family membrane protein TERM 4272 2974917 - 2974937 + r 82 -9.7 -3.30635 | opp_overlap 2974917 2974922, overlap 2974905 ATATTTATTATTTAA GGAAAGTGC ACC GCACTTCCC TTATAAACAGATTTC TERM 4273 2974937 - 2974917 - R 90 -11.9 -3.10343 | opp_overlap 2974917 2974905, overlap 2974922 ATATTTATTATTTAA GGAAAGTGC ACC GCACTTCCC TTATAAACAGATTTC TERM 4274 2974997 - 2974945 - R 100 -27.6 -3.86015 | gap 1, opp_overlap 2974905 2974937 2974946 2974947 2974949, overlap 2974947 CACTTCCCTTATAAA CAGATTTCTAAGCTTTAGAGGGAGT TTTT ACTCCCTCTAAAGCTTAGAAATC-G TTATCCAGAGACGTA TERM 4275 2974946 - 2974997 + r 100 -27.8 -3.28924 | opp_overlap 2974945 2974947, overlap 2974905 2974937 2974947 2974949 ACTTCCCTTATAAAC AGATTTCTAAGCTTTAGAGGGAGT TTTT ACTCCCTCTAAAGCTTAGAAATCG TTATCCAGAGACGTA TERM 4276 2974947 - 2974996 + r 100 -31.3 -2.57211 | opp_overlap 2974945 2974947, overlap 2974905 2974937 2974946 2974949 CTTCCCTTATAAACA GATTTCTAAGCTTTAGAGGGAGT TTTT ACTCCCTCTAAAGCTTAGAAATC GTTATCCAGAGACGT TERM 4277 2974996 - 2974947 - R 100 -31.3 -3.51934 | opp_overlap 2974905 2974937 2974947 2974946 2974949, overlap 2974945 CTTCCCTTATAAACA GATTTCTAAGCTTTAGAGGGAGT TTTT ACTCCCTCTAAAGCTTAGAAATC GTTATCCAGAGACGT TERM 4278 2974949 - 2974994 + r 100 -28.1 -2.82623 | opp_overlap 2974947 2974945, overlap 2974937 2974947 2974946 TCCCTTATAAACAGA TTTCTAAGCTTTAGAGGGAGT TTTT ACTCCCTCTAAAGCTTAGAAA TCGTTATCCAGAGAC CLI_2838 2976154 - 2975078 - | ABC transporter, permease protein CLI_2839 2977034 - 2976138 - | ABC transporter, ATP-binding protein CLI_2840 2977420 - 2977040 - | GntR family transcriptional regulator CLI_2841 2978109 - 2977594 - | VanZ family membrane protein CLI_2842 2978430 - 2980142 + | hydroxylamine reductase CLI_2843 2980624 - 2981214 + | membrane-spanning protein TERM 4279 2982184 - 2982171 - g 73 -3.9 -5.31072 | AGAATACAATAAAAA CAAAA GGTA TTTTG TAGCTAATATGCCTA TERM 4280 2982337 - 2982315 - g 72 -4.9 -4.87318 | opp_overlap 2982332 TTTAAAATTTAAAAA CGGAAAGAT AATAG ATTTTTCCG CTGAGGAAGGTTATG CLI_2844 2981458 - 2982690 + | aminopeptidase II TERM 4281 2982781 - 2982732 - T 82 -9.1 -4.14243 | gap 1, opp_overlap 2982732 2982739, overlap 2982714 2982739 CACCTTATTTTAAAA TGAAAAAGATATGAATTTGTAATA TTG TATTTAAAATTCATATC-TTTTCA TTTTCAATTATTAAA TERM 4282 2982732 - 2982781 + T 84 -9.1 -4.36127 | gap 1, opp_overlap 2982714 2982732 2982739, overlap 2982739 CACCTTATTTTAAAA TGAAAAAGATATGAATTTGTAATA TTG TATTTAAAATTCATATC-TTTTCA TTTTCAATTATTAAA TERM 4283 2982739 - 2982775 + T 85 -8.3 -4.69549 | opp_overlap 2982732 2982739, overlap 2982732 TTTTAAAATGAAAAA GATATGAATTTGTAATA TTG TATTTAAAATTCATATC TTTTCATTTTCAATT TERM 4284 2982775 - 2982739 - T 91 -8.3 -5.0925 | opp_overlap 2982739 2982732, overlap 2982732 TTTTAAAATGAAAAA GATATGAATTTGTAATA TTG TATTTAAAATTCATATC TTTTCATTTTCAATT gerAC 2984023 - 2982878 - | spore germination protein TERM 4285 2983649 - 2983639 - GT 78 -4 -5.45813 | opp_overlap 2983639 GATTAAAAAATAAAA GATT GGT AATC TCGTTTATTCCATCA CLI_2846 2985110 - 2983977 - | spore germination protein gerAA 2986587 - 2985100 - | spore germination protein TERM 4286 2986766 - 2986728 - R 100 -16.5 -5.01732 | opp_overlap 2986728 AATTCCGTTAAAAAA CACTATGAAAATTTATT TAAAT AATAAATTTTCATAGTG TTTTTTATGTTTTAT TERM 4287 2986728 - 2986766 + r 100 -16.5 -5.65678 | opp_overlap 2986728 AATTCCGTTAAAAAA CACTATGAAAATTTATT TAAAT AATAAATTTTCATAGTG TTTTTTATGTTTTAT CLI_2848 2987067 - 2986858 - | hypothetical protein TERM 4288 2987084 - 2987139 + r 71 -6.6 -4.11585 | gap 1, opp_overlap 2987096 ATGTACACCCTCCAT TTGAATAAAATT-CCAAAGCATGTTTA TAT TATACATCTTTTGGTAATTTTTTTCAA TTATTTATAATCAAT TERM 4289 2987161 - 2987193 + r 73 -7.3 -4.11216 | ATAATCAATCGTGCA TTTCATAATAATTTT ATT GGGATTATTATGAAA TTTTCCAAGTAAAAA TERM 4290 2987251 - 2987210 - R 100 -9.1 -5.26875 | gap 1, opp_overlap 2987210 TTTCCAAGTAAAAAA CTCTTTTTAAGT-TGCATGT TTA ATATACACACTTAAAAAGAG TTTTTTAATATTTAA TERM 4291 2987210 - 2987251 + r 100 -9.1 -5.32699 | gap 1, opp_overlap 2987210 TTTCCAAGTAAAAAA CTCTTTTTAAGT-TGCATGT TTA ATATACACACTTAAAAAGAG TTTTTTAATATTTAA CLI_2849 2987411 - 2987292 - | hypothetical protein CLI_2850 2988285 - 2987413 - | pyridoxine biosynthesis protein TERM 4292 2988511 - 2988542 + r 72 -8 -3.62522 | TAAACAGAGTTCTTG GCTTCAGAGGGATT TTTT ACTTCCACTGAAGC TTATTAACAGAATTC TERM 4293 2988547 - 2988586 + r 73 -8.8 -2.90615 | gap 1, opp_overlap 2988555, overlap 2988551 2988552 2988554 TCCACTGAAGCTTAT TAACAGAATTCTTAGGAGT TTT ACTCCTTAGAAGTC-GTTA TCCTTTAGGAGAAAT TERM 4294 2988552 - 2988582 + r 79 -9.8 -2.75769 | opp_overlap 2988555, overlap 2988551 2988547 2988554 TGAAGCTTATTAACA GAATTCTTAGGAGT TTT ACTCCTTAGAAGTC GTTATCCTTTAGGAG TERM 4295 2988579 - 2988555 - R 90 -10.1 -3.71552 | opp_overlap 2988554 2988552 2988551 2988547 AGCTTATTAACAGAA TTCTTAGGAGT TTT ACTCCTTAGAA GTCGTTATCCTTTAG TERM 4296 2988715 - 2988683 - R 100 -13.1 -5.26316 | opp_overlap 2988683 TCATCGGATAAAAAA TACTTTTAGAAATTA TAT CAATTTCTAAAAGTA TTTTTAAATAATTAT TERM 4297 2988683 - 2988715 + r 100 -12.4 -4.71382 | opp_overlap 2988683 TCATCGGATAAAAAA TACTTTTAGAAATT ATATC AATTTCTAAAAGTA TTTTTAAATAATTAT TERM 4298 2988827 - 2988799 - R 70 -4 -5.27023 | gap 1, opp_overlap 2988799 2988801, overlap 2988803 ACTTCAAAAATAAAA TATAGGTA-AAGC TAAA GCTTATACCAATA ATTCCTATTTTCTAT CLI_2851 2989563 - 2988832 - | polysaccharide deacetylase family protein TERM 4299 2989739 - 2989699 - R 93 -9.3 -4.69962 | opp_overlap 2989704 2989730, overlap 2989704 TACATCAAAAAATAA CAAAAGCTAAGAAACAAAT AAA ATTTACCTCTTAGCTTCTA AATTCTCTAGTAATT TERM 4300 2989734 - 2989704 - R 100 -9.2 -5.22104 | opp_overlap 2989704 2989730, overlap 2989699 CAAAAAATAACAAAA GCTAAGAAACAAAT AAA ATTTACCTCTTAGC TTCTAAATTCTCTAG CLI_2852 2991358 - 2989784 - | DEAD-box ATP dependent DNA helicase TERM 4301 2991416 - 2991390 - R 100 -11.7 -4.8622 | GTTGTTAATTAAAAA TGGCTGTTGAC ATATA ATCAACAGCCA ATAAAAAATCTTTTC CLI_2853 2991602 - 2991435 - | hypothetical protein CLI_2854 2992034 - 2992459 + | hypothetical protein TERM 4302 2992537 - 2992501 - T 83 -6.8 -5.18355 | opp_overlap 2992501 TTTAAAAATTAAAAA GCTATATATTTGTAAC CATAT ATTACAAATGCATAGC TTTTTAATTTTTATA TERM 4303 2992501 - 2992537 + T 80 -6.1 -5.2197 | opp_overlap 2992501 TTTAAAAATTAAAAA GCTATATATTTGTAA CCATATA TTACAAATGCATAGC TTTTTAATTTTTATA CLI_2855 2994242 - 2992548 - | methyl-accepting chemotaxis protein TERM 4304 2993324 - 2993338 + g 70 -5.6 -4.26351 | overlap 2993329 TAGCGTTTATTTCCT CTGCTG AAG CTGCAG TTTCTTCCATTGCTG TERM 4305 2993586 - 2993574 - G 74 -7.7 -3.737 | opp_overlap 2993574 2993573 TAACTCCTTATTAAA GTCTC CCT GAGAC ATATTTTCAAGATAT TERM 4306 2994258 - 2994292 + r 75 -9.7 -2.64973 | opp_overlap 2994258, overlap 2994260 ATCCTACCTCCTAAA TATGTATAAATTATT TTTCT AGTAATTTATACATA TAATATCGAATTAAT TERM 4307 2994292 - 2994258 - R 72 -7.5 -3.55563 | opp_overlap 2994258 2994260 ATCCTACCTCCTAAA TATGTATAAATTATT TTTCT AGTAATTTATACATA TAATATCGAATTAAT TERM 4308 2994363 - 2994397 + r 91 -7.4 -5.50723 | opp_overlap 2994363 TTCTAAATTAAAAAA CATTATGAAATTAATT TAA AACTAACTTCATAATG TTTTTATTTTAATAA TERM 4309 2994397 - 2994363 - R 100 -11.8 -5.37593 | opp_overlap 2994363 TTCTAAATTAAAAAA CATTATGAAATTAATT TAA AACTAACTTCATAATG TTTTTATTTTAATAA CLI_2856 2994849 - 2994439 - | universal stress protein family protein TERM 4310 2995436 - 2995460 + H 100 -10.2 -5.0538 | opp_overlap 2995435 2995434 AGTATATTAAAATCT TTATATACCC ATATG GGGTATATAA TTTTTTGGAATGAGG CLI_2857 2995483 - 2996124 + | iron-sulfur cluster-binding protein TERM 4311 2996280 - 2996229 - T 100 -18.5 -3.5944 | opp_overlap 2996229 ATTTATACTCTCAAA TATGGCTATGAAGATAAATTTGT TTTTAT ACAAAGTTACCTTCATAGCCATA TTTAATGATAAATTC TERM 4312 2996229 - 2996280 + T 100 -16.3 -3.80461 | opp_overlap 2996229 ATTTATACTCTCAAA TATGGCTATGAAGATAAATTTGT TTTTAT ACAAAGTTACCTTCATAGCCATA TTTAATGATAAATTC CLI_2858 2997301 - 2996384 - | glutaminase TERM 4313 2997385 - 2997401 + r 86 -5.3 -5.75478 | opp_overlap 2997378, overlap 2997375 TAAGCTAATTTCTAT TATATAA AAA TTATATA TTTTTTTCTATAATT TERM 4314 2997542 - 2997493 - R 72 -6.1 -4.41241 | opp_overlap 2997499 2997527 TAAATTTCTATAAAA TATACCCTATAAAATAGAT TCCTTTTTACTC ATCTACTCTACAGGGTATA TTATTATAAAGCAAA TERM 4315 2997710 - 2997689 - R 70 -2.5 -5.45802 | gap 1, overlap 2997694 TCTCTAAAATAAAAA TATATTACTA TCC TAGTA-TATA AACTTTTACACTTCT CLI_2859 2998721 - 2997696 - | hypothetical protein TERM 4316 2998185 - 2998203 + g 71 -3.2 -5.27335 | ATTCTTATTCAATCT TAATAAAG CAA CTTCATTA TTTTTCTTTAAGGCC TERM 4317 2998517 - 2998527 + g 70 -4 -4.94992 | overlap 2998509 TATTAACCTTATTCA TAAG TTG CTTA TTTTTATCAATTTCA TERM 4318 2998880 - 2998855 - R 95 -9.2 -4.86731 | opp_overlap 2998853 TTTCTTTAAATAAAA TTATAGTGAG TAAAAG CTCACTATAA CCTAAGTTCCACTTT TERM 4319 2998992 - 2998971 - R 91 -7.3 -5.48825 | opp_overlap 2998971 2998974 TATTATGTAAAAAAA GCAGTGTCC ATTA AGACACTAC TTTAGACCTATTTGT CLI_2860 2999273 - 2998989 - | putative lipoprotein TERM 4320 2999379 - 2999341 - R 100 -13.5 -4.371 | opp_overlap 2999341, overlap 2999313 2999343 TCCATTAGATGAAAA TAGGCTGAATAATATTT GTTTA AAATACTATTCAGCCCA TGTAATACTCAATTT TERM 4321 2999341 - 2999379 + r 73 -9.1 -2.83908 | opp_overlap 2999313 2999341 2999343 TCCATTAGATGAAAA TAGGCTGAATAATATTT GTTTA AAATACTATTCAGCCCA TGTAATACTCAATTT TERM 4322 2999377 - 2999343 - R 100 -13.9 -3.78877 | opp_overlap 2999341, overlap 2999341 CATTAGATGAAAATA GGCTGAATAATATTT GTTTA AAATACTATTCAGCC CATGTAATACTCAAT CLI_2861 3001463 - 2999403 - | methyl-accepting chemotaxis protein TERM 4323 3000242 - 3000253 + g 70 -5.8 -4.21974 | overlap 3000240 TAGTAATTTCATTTG CTGC TTCT GCAG TTTGTTGACTAGTAG TERM 4324 3001849 - 3001894 + r 80 -9.3 -3.2032 | opp_overlap 3001849 3001854, overlap 3001854 TTAATATATAGTAAA TAAAAGCCATGAAATTAAGTT ATTA ATCTTAATTTCATAGCTTTTC CTTTTAATGTAAAGA TERM 4325 3001894 - 3001849 - R 100 -11.5 -3.93383 | opp_overlap 3001849 3001854, overlap 3001854 TTAATATATAGTAAA TAAAAGCCATGAAATTAAGTT ATTA ATCTTAATTTCATAGCTTTTC CTTTTAATGTAAAGA TERM 4326 3001889 - 3001854 - R 100 -11.4 -4.98061 | opp_overlap 3001854 3001849, overlap 3001849 ATATAGTAAATAAAA GCCATGAAATTAAGTT ATTA ATCTTAATTTCATAGC TTTTCCTTTTAATGT TERM 4327 3001854 - 3001889 + r 93 -9.2 -4.71222 | opp_overlap 3001849 3001854, overlap 3001849 ATATAGTAAATAAAA GCCATGAAATTAAGTT ATTA ATCTTAATTTCATAGC TTTTCCTTTTAATGT CLI_2862 3002799 - 3001981 - | hypothetical protein TERM 4328 3003070 - 3003123 + r 86 -11.5 -2.60206 | gap 1, opp_overlap 3003073 3003078, overlap 3003078 AGATAATAAATATTA TAAGAAAATAGCCTAACAAAATG-TA TTT TAGCACTTTGTTAGGCTATTTTTATA ACTTTATTTATAATC TERM 4329 3003120 - 3003073 - R 100 -13.2 -3.60631 | gap 1, opp_overlap 3003070 3003078, overlap 3003078 TAATAAATATTATAA GAAAATAGCCTAACAAAATG-TA TTT TAGCACTTTGTTAGGCTATTTTT ATAACTTTATTTATA TERM 4330 3003078 - 3003115 + r 100 -10.9 -4.95896 | gap 1, opp_overlap 3003073 3003078, overlap 3003070 AATATTATAAGAAAA TAGCCTAACAAAATG-TA TTT TAGCACTTTGTTAGGCTA TTTTTATAACTTTAT TERM 4331 3003115 - 3003078 - R 100 -13.1 -4.83722 | gap 1, opp_overlap 3003078 3003070, overlap 3003073 AATATTATAAGAAAA TAGCCTAACAAAATG-TA TTT TAGCACTTTGTTAGGCTA TTTTTATAACTTTAT TERM 4332 3003180 - 3003163 - R 72 -8.5 -3.20553 | opp_overlap 3003163, overlap 3003162 CAAGATCATCAAAAT CAAAAGC TGCT GCTTTTG TATAGTTCGTAACCT TERM 4333 3003163 - 3003180 + r 71 -8.5 -2.93901 | opp_overlap 3003163 3003162 CAAGATCATCAAAAT CAAAAGC TGCT GCTTTTG TATAGTTCGTAACCT nrdB 3004171 - 3003143 - | ribonucleoside-diphosphate reductase, beta subunit nrdA 3006658 - 3004367 - | ribonucleoside-diphosphate reductase, alpha subunit TERM 4334 3006825 - 3006835 + H 70 -2.6 -5.55769 | CTTATTTTTTCACTA TATA TTG TATA TTTTTTATTATAGAG TERM 4335 3007967 - 3007957 - g 91 -4 -6.00086 | opp_overlap 3007957, overlap 3007959 ACATGAGAAAAAAAA GATA AAG TATC TTCATAACTGGGAAG CLI_2865 3007688 - 3008809 + | hypothetical protein TERM 4336 3009071 - 3009061 - f 73 -5.4 -4.78157 | ATGAAAAATAATAAA GATG AAA CATC ATATAGTATAACTAT TERM 4337 3009210 - 3009191 - g 74 -3 -5.41746 | AATCGGGTAAAAAAA TTCTTTAT GATG ATAAAAAA AATAAAAATTTTGAA TERM 4338 3009306 - 3009269 - g 72 -6.5 -4.22375 | gap 1, opp_overlap 3009268 ATATGATGGAACAAA TTTATCCCTTAG-ATACC ACA GGTAAACTAATGGATAAA AATTTCGATCCTGGT CLI_2866 3009109 - 3009897 + | hypothetical protein TERM 4339 3009945 - 3009899 - T 85 -8.3 -4.66535 | gap 1, overlap 3009900 3009903 AAGCTCTAAAATAAA CTAGCCCCTGTGAATAATA-AT ATTA ATATACTATCCACAGGGGTTAA AATTGCTTATCTTTT TERM 4340 3009944 - 3009900 - T 82 -9.6 -3.38836 | gap 1, overlap 3009899 3009903 AGCTCTAAAATAAAC TAGCCCCTGTGAATAATA-AT ATTA ATATACTATCCACAGGGGTTA AAATTGCTTATCTTT TERM 4341 3009941 - 3009903 - T 82 -11.3 -2.54636 | gap 1, overlap 3009900 3009899 TCTAAAATAAACTAG CCCCTGTGAATAATA-AT ATTA ATATACTATCCACAGGGG TTAAAATTGCTTATC dinB 3011106 - 3010057 - | DNA polymerase IV TERM 4342 3010118 - 3010134 + g 73 -8.1 -3.39471 | opp_overlap 3010117 TTTGATACAGTAAGC CCTATAA GTC TTATAGG TTCCTTAAAATTTAT TERM 4343 3011465 - 3011519 + r 100 -20.6 -2.88404 | opp_overlap 3011473 3011484, overlap 3011473 3011484 ATTTTATATAATTTC CTTATAAACAGATTAAAAACCACTAA TTA TAAGTGGTTTTTAATCTGTTTATAAA ATTATTAAATTTTCA TERM 4344 3011511 - 3011473 - R 100 -17.8 -3.86822 | opp_overlap 3011465 3011473 3011484, overlap 3011484 TAATTTCCTTATAAA CAGATTAAAAACCACTAA TTA TAAGTGGTTTTTAATCTG TTTATAAAATTATTA TERM 4345 3011473 - 3011511 + r 100 -17.8 -3.95051 | opp_overlap 3011473 3011484, overlap 3011465 3011484 TAATTTCCTTATAAA CAGATTAAAAACCACTAA TTA TAAGTGGTTTTTAATCTG TTTATAAAATTATTA TERM 4346 3011484 - 3011500 + r 70 -5.1 -4.90217 | opp_overlap 3011473 3011484, overlap 3011473 3011465 TAAACAGATTAAAAA CCACTAA TTA TAAGTGG TTTTTAATCTGTTTA TERM 4347 3011500 - 3011484 - R 70 -5.1 -4.90217 | opp_overlap 3011484 3011473 3011465, overlap 3011473 TAAACAGATTAAAAA CCACTAA TTA TAAGTGG TTTTTAATCTGTTTA CLI_2868 3012806 - 3011571 - | dihydropyrimidine dehydrogenase TERM 4348 3012598 - 3012608 + g 74 -5.4 -4.93318 | opp_overlap 3012598 TTAAAACCTAAAAAT GAAG TTC CTTC TTTTTCTAAATTATC TERM 4349 3012654 - 3012638 - G 79 -8.1 -3.92143 | opp_overlap 3012630 CAAAACGTGGAGAAA CTTCATT TGC AATGAAG AAGCCTATAGTTTTA CLI_2869 3014122 - 3012806 - | pyridine nucleotide-disulphide oxidoreductase family protein TERM 4350 3013395 - 3013378 - G 71 -7.1 -3.85698 | opp_overlap 3013377 CTTTTCCCTTAGAAA TTTTAGC TTCT GCTAAAA AATTTGTTCCAGCAA TERM 4351 3013577 - 3013551 - G 75 -7.4 -4.11692 | opp_overlap 3013551 CAGTTAGTTCTAAAA TGGACACCTAAA TTC TTTATGTATCCA ATTTCATTTTCAACA TERM 4352 3014187 - 3014225 + r 100 -16.4 -2.94232 | opp_overlap 3014192, overlap 3014192 CAATAGTTTAACAAA AAAAATAGACCATTTCTA ACT TAGAAATGGTCTATTTTC ATTATTTAAGACAAA TERM 4353 3014220 - 3014192 - R 100 -16.3 -6.09888 | opp_overlap 3014187 3014192 GTTTAACAAAAAAAA TAGACCATTTCTA ACT TAGAAATGGTCTA TTTTCATTATTTAAG TERM 4354 3014192 - 3014220 + r 100 -16.3 -4.62203 | opp_overlap 3014192, overlap 3014187 GTTTAACAAAAAAAA TAGACCATTTCTA ACT TAGAAATGGTCTA TTTTCATTATTTAAG pyrR-2 3015119 - 3014571 - | pyrimidine operon regulatory protein/uracil phosphoribosyltransferase TERM 4355 3015179 - 3015157 - R 85 -6.3 -5.56673 | ATTTACAACAAAAAA TGTCTCGAC CCTTC GCCAAGACA TTTGTATAGACTTAT TERM 4356 3015422 - 3015389 - R 93 -6.9 -5.94713 | opp_overlap 3015389 3015398 ATTTTATAAAAAAAA TCACACTGCCAAA ATATTTGA TTTAACAGTGTGA TTATAATCTTTAAAA CLI_2871 3016503 - 3015448 - | hypothetical protein TERM 4357 3016912 - 3016871 - R 100 -9.2 -6.23545 | opp_overlap 3016871 3016874 GTCAAATAAAAAAAA TAATAAGAATATATAATA ACCTAA TATTACACATTCTTATTA TTATAGCTTATACTA CLI_2872 3017621 - 3017019 - | hypothetical protein CLI_2873 3018196 - 3017777 - | MarR family transcriptional regulator CLI_2874 3020472 - 3018214 - | putative excinuclease ABC, A subunit TERM 4358 3021302 - 3021282 - g 72 -6.9 -4.10953 | AGCCAGCAAATGAAA CAGCTAAAA ATA TATTAGCTG AAAAAAGCATAATTT CLI_2875 3021017 - 3021325 + | hypothetical protein TERM 4359 3021391 - 3021420 + T 70 -5 -4.85267 | opp_overlap 3021391, overlap 3021378 TATTAATTATAAAAA GCAGAGCTATAT CTTCTT ATAATGCTCTGC TTTTTAATAATTTAT TERM 4360 3021420 - 3021391 - T 72 -5 -4.99861 | opp_overlap 3021391 3021378 TATTAATTATAAAAA GCAGAGCTATAT CTTCTT ATAATGCTCTGC TTTTTAATAATTTAT ligT 3021972 - 3021436 - | 2'-5' RNA ligase TERM 4361 3021992 - 3022044 + r 73 -6.8 -4.23781 | gap 1, opp_overlap 3021991 3022004, overlap 3021994 3021999 3022002 ACTTAAAATTAAATT TTTTTGT-TAATATTAGCTTAGTTT ATAC AAACTAAGCTAATATTATATATATA TTTAATTTTAATAAA TERM 4362 3021994 - 3022042 + r 84 -9.4 -3.71107 | gap 1, opp_overlap 3021991 3022004, overlap 3021992 3021999 3022002 TTAAAATTAAATTTT TTTGT-TAATATTAGCTTAGTTT ATAC AAACTAAGCTAATATTATATATA TATTTAATTTTAATA TERM 4363 3021999 - 3022036 + r 100 -17.5 -3.16931 | opp_overlap 3021991 3022004, overlap 3021994 3021992 3022002 ATTAAATTTTTTTGT TAATATTAGCTTAGTTT ATAC AAACTAAGCTAATATTA TATATATATTTAATT TERM 4364 3022002 - 3022033 + r 100 -14.8 -3.70689 | opp_overlap 3021991 3022004, overlap 3021999 3021994 3021992 AAATTTTTTTGTTAA TATTAGCTTAGTTT ATAC AAACTAAGCTAATA TTATATATATATTTA TERM 4365 3022031 - 3022004 - R 93 -13 -3.01791 | opp_overlap 3022002 3021999 3021994 3021992, overlap 3021991 ATTTTTTTGTTAATA TTAGCTTAGTTT ATAC AAACTAAGCTAA TATTATATATATATT CLI_2877 3022546 - 3022148 - | hypothetical protein CLI_2878 3024833 - 3023121 - | methyl-accepting chemotaxis protein TERM 4366 3023927 - 3023947 + g 70 -8.4 -3.08344 | ACTCCTGCATACTTC CTGCAATA TTATT TATTGCAG TATCTATAGTTTCCA TERM 4367 3025383 - 3025437 + r 100 -15.7 -4.6902 | gap 2, opp_overlap 3025383 3025390, overlap 3025390 AATCTATGATTGAAA GATAAAATCTAGTGAAGAT--GTTATT ATA AATAGCAAATCTTCACTAGATTTTATC TTTTTACAATTATAA TERM 4368 3025437 - 3025383 - R 100 -14.9 -3.69094 | gap 1, opp_overlap 3025383 3025390, overlap 3025390 AATCTATGATTGAAA GATAAAATCTAGTGAAGATGTTATTA TAAA TAGCAA-ATCTTCACTAGATTTTATC TTTTTACAATTATAA TERM 4369 3025390 - 3025430 + r 90 -8 -4.98672 | gap 2, opp_overlap 3025383 3025390, overlap 3025383 GATTGAAAGATAAAA TCTAGTGAAGAT--GTTATT ATA AATAGCAAATCTTCACTAGA TTTTATCTTTTTACA TERM 4370 3025430 - 3025390 - R 81 -7.2 -4.80455 | gap 1, opp_overlap 3025390 3025383, overlap 3025383 GATTGAAAGATAAAA TCTAGTGAAGATGTTATTA TAAA TAGCAA-ATCTTCACTAGA TTTTATCTTTTTACA CLI_2879 3025983 - 3025546 - | MutT/nudix family protein TERM 4371 3025576 - 3025601 + g 72 -4.8 -4.86133 | TCCCTCATTAGCCAG TGCATCCT TTAACCAATC AGGATGCA TTTTTACTATATCTA TERM 4372 3026072 - 3026018 - H 88 -5.2 -5.9362 | gap 2, opp_overlap 3026062, overlap 3026034 TAAAATATAAAAAAA CCCGAGAAGATAAAAATTCAGCGCAT AAAAA ACACGCTGAACCTTC-CCC-CTCGGG CATTTTATTCCAATA TERM 4373 3026058 - 3026034 - H 87 -7.2 -5.1523 | overlap 3026018 CCGAGAAGATAAAAA TTCAGCGCAT AAAAA ACACGCTGAA CCTTCCCCCTCGGGC CLI_2880 3026524 - 3026991 + | FUR family transcriptional regulator TERM 4374 3028246 - 3028262 + G 85 -8.1 -4.57209 | opp_overlap 3028245 3028243 ACAGGAACTGAATAC TTTGGAT TAA ATCCAAA TTTTATGGTTGGTCT CLI_2881 3027124 - 3029121 + | hypothetical protein TERM 4375 3029205 - 3029161 - T 95 -12.7 -3.6707 | gap 1, opp_overlap 3029161 3029168, overlap 3029152 3029168 ACTTAATATTCCAAA TAAA-AAATGTCAAGCTAAA TTTACT TTTAGCTTGACATTTATTTA TTTTACTTATTACTT TERM 4376 3029161 - 3029205 + T 100 -12.7 -4.58644 | gap 1, opp_overlap 3029152 3029161 3029168, overlap 3029168 ACTTAATATTCCAAA TAAA-AAATGTCAAGCTAAA TTTACT TTTAGCTTGACATTTATTTA TTTTACTTATTACTT TERM 4377 3029197 - 3029168 - T 100 -12.4 -5.64421 | opp_overlap 3029161 3029168, overlap 3029161 ATTCCAAATAAAAAA TGTCAAGCTAAA TTTACT TTTAGCTTGACA TTTATTTATTTTACT TERM 4378 3029168 - 3029197 + T 100 -12.4 -4.88786 | opp_overlap 3029168 3029161, overlap 3029161 ATTCCAAATAAAAAA TGTCAAGCTAAA TTTACT TTTAGCTTGACA TTTATTTATTTTACT CLI_2882 3031427 - 3029208 - | glycosy hydrolase family protein TERM 4379 3031637 - 3031590 - R 78 -4.6 -5.50925 | gap 3, opp_overlap 3031590 AATGAATATAAAAAA GTGTTAGGCAATTC-T-TCCTCA TAACT TAAGGACATGAATT-CCTAACAC TTATATTTTAAATTA nagB 3032389 - 3031655 - | glucosamine-6-phosphate deaminase TERM 4380 3031976 - 3031954 - G 76 -10 -2.76404 | overlap 3031950 3031951 CTGATTCAAAACTTA TATTGGGTTC ATT AAACCCAATA TGGCCATTGACACCA nagA 3033614 - 3032472 - | N-acetylglucosamine-6-phosphate deacetylase TERM 4381 3033343 - 3033355 + g 82 -7.7 -4.51777 | opp_overlap 3033343 3033342 GTAGTTGGTAAAAAT GAGGT CAC ACCTC TTTTAGTTATAGTAT CLI_2885 3034509 - 3033775 - | GntR family transcriptional regulator CLI_2886 3034953 - 3034801 - | hypothetical protein TERM 4382 3035379 - 3035325 - R 84 -9.2 -3.68023 | gap 2, opp_overlap 3035334, overlap 3035334 AACCTTTAAAATTAA TTTAATGAAGCCCTGATATATTTAAA AACTA TTTAAATATATCAGGGCTT--TGAAA ATATATTCCTTAGCA TERM 4383 3035372 - 3035334 - R 100 -19.3 -3.41636 | opp_overlap 3035334, overlap 3035325 AATTAATTTAATGAA GCCCTGATATATTTAAA AACTA TTTAAATATATCAGGGC TTTGAAAATATATTC TERM 4384 3035334 - 3035372 + r 100 -19.3 -3.60948 | opp_overlap 3035334 3035325 AATTAATTTAATGAA GCCCTGATATATTTAAA AACTA TTTAAATATATCAGGGC TTTGAAAATATATTC CLI_2887 3036581 - 3035472 - | hypothetical protein TERM 4385 3037276 - 3037290 + H 75 -5.8 -5.02439 | overlap 3037281 ATGTTATTCCCCTAT TTTTAG AAT CTAAAA TTTTTATGATTCTGT CLI_2889 3037862 - 3038719 + | BglG family transcriptional antiterminator TERM 4386 3038893 - 3038853 - T 80 -8.6 -4.3467 | opp_overlap 3038853 ATTTTTATACCAAAA GGCGTAATACCAATAT CCATAAATT ATATTAATATTACGCC TTAATAAATAAACTT ptbA 3039418 - 3038939 - | PTS system, glucose subfamily, IIA component TERM 4387 3039488 - 3039513 + H 73 -9.1 -2.92667 | opp_overlap 3039488, overlap 3039485 TTCAAATAAAAAAAA GGCATAAGTTA TCCC TAACTCATGCC TGATTTAACAGTTAC TERM 4388 3039513 - 3039488 - H 100 -11.3 -6.23545 | opp_overlap 3039488 3039485 TTCAAATAAAAAAAA GGCATAAGTTA TCCC TAACTCATGCC TGATTTAACAGTTAC TERM 4389 3039650 - 3039599 - H 95 -10.6 -4.08767 | opp_overlap 3039602, overlap 3039602 3039606 CTTATTTCTTTAAAA TTATTAAGTATAATCTATTGACAT TTTT ATTTCAATAGATTATACTTAATTT ATCAGCGTGCAACCA TERM 4390 3039647 - 3039602 - H 100 -16.7 -3.08211 | opp_overlap 3039602, overlap 3039599 3039606 ATTTCTTTAAAATTA TTAAGTATAATCTATTGACAT TTTT ATTTCAATAGATTATACTTAA TTTATCAGCGTGCAA TERM 4391 3039602 - 3039647 + H 100 -16.7 -3.87815 | opp_overlap 3039602 3039599 3039606 ATTTCTTTAAAATTA TTAAGTATAATCTATTGACAT TTTT ATTTCAATAGATTATACTTAA TTTATCAGCGTGCAA TERM 4392 3039643 - 3039606 - H 100 -13.1 -3.37533 | opp_overlap 3039602, overlap 3039602 3039599 CTTTAAAATTATTAA GTATAATCTATTGACAT TTTT ATTTCAATAGATTATAC TTAATTTATCAGCGT TERM 4393 3039707 - 3039679 - H 77 -7.5 -4.08692 | opp_overlap 3039679 CAACGTTGGGCAAAA GCTGAAAAGGT TATCTAT ACCTTTTCGGC TTTTTTTGTTGCAAT TERM 4394 3039679 - 3039707 + H 100 -9.7 -5.80364 | opp_overlap 3039679 CAACGTTGGGCAAAA GCTGAAAAGGT TATCTAT ACCTTTTCGGC TTTTTTTGTTGCAAT TERM 4395 3039790 - 3039767 - H 85 -10.4 -3.02144 | opp_overlap 3039755 CTACCTGCTCTAATA CTCCCATCTT CTTA AAAATGGGAG TAAAGAGCGGCTATG TERM 4396 3039838 - 3039868 + H 85 -9.8 -3.16288 | opp_overlap 3039838 3039837 3039834 3039840, overlap 3039837 CCCCTAAAGGATAAC GATTTCTAAGGAGT AAA GCTCCTAAGAAGTC TGTTAATAAGCTTTA nagE 3040114 - 3041556 + | PTS system, N-acetylglucosamine-specific, IIBC component TERM 4397 3041638 - 3041593 - f 88 -12.3 -2.6914 | opp_overlap 3041594 3041599, overlap 3041570 3041599 TATTCCTTATATAAC TTAAAAGCCTACAAATATA TGAATATT TATATTTGTAGGCTTTTAT TTATAATTATTTATT TERM 4398 3041594 - 3041637 + F 100 -15.8 -4.18441 | opp_overlap 3041570 3041593 3041599, overlap 3041599 ATTCCTTATATAACT TAAAAGCCTACAAATATA TGAATATT TATATTTGTAGGCTTTTA TTTATAATTATTTAT TERM 4399 3041599 - 3041632 + F 100 -11.3 -5.04733 | opp_overlap 3041593 3041599, overlap 3041594 TTATATAACTTAAAA GCCTACAAATATA TGAATATT TATATTTGTAGGC TTTTATTTATAATTA TERM 4400 3041632 - 3041599 - f 100 -11.3 -4.34267 | opp_overlap 3041599 3041594, overlap 3041593 TTATATAACTTAAAA GCCTACAAATATA TGAATATT TATATTTGTAGGC TTTTATTTATAATTA TERM 4401 3043216 - 3043226 + G 70 -5.4 -4.62783 | CAGGACTTATAGTTA TGTC TAT GACA TTTTTCCAATCAATA TERM 4402 3043431 - 3043419 - g 70 -3.5 -5.16572 | opp_overlap 3043419 ATTGAATTTAAAAAA TTATA TGA TATAA ATTCTTCAGAAAATC CLI_2892 3042099 - 3043469 + | MATE efflux family protein TERM 4403 3043495 - 3043527 + T 75 -6.5 -4.43173 | opp_overlap 3043500, overlap 3043500 GAATATATATTTAGA TAAAAGGTGAC TCATATACTAT GTCACCTTTTA TTTTCCCTTATTTTT CLI_2893 3045027 - 3043633 - | MATE efflux family protein TERM 4404 3043867 - 3043855 - G 70 -5.5 -4.33674 | opp_overlap 3043855, overlap 3043865 AATAGACAATATAAA GGCTC CTA AAGCC TTGCCTAAAGCTTGA TERM 4405 3044294 - 3044283 - G 70 -4.4 -4.87665 | opp_overlap 3044283, overlap 3044285 CTTGAGTTACAAAAA TAGG AATA CCTA TCTTAAGTATTTCAA TERM 4406 3045241 - 3045207 - R 81 -7.3 -4.7889 | gap 1 ACAAATATTCAAAAA GGACCAACTCACCAGA ATTA TCCA-TGAATTGGTCC TAAATTTATATTTTT CLI_2894 3046462 - 3045263 - | metallo-beta-lactamase family protein/flavodoxin CLI_2895 3048428 - 3046521 - | acyl-CoA dehydrogenase family protein/electron transfer protein TERM 4407 3048690 - 3048672 - R 100 -11.8 -6.23317 | AGAAAAATAAAAAAA GAAGGTCT TTA AGACCTTC AGGCTGTTGATAAAT TERM 4408 3048753 - 3048782 + r 100 -10.1 -4.4648 | AATAAAAATATTTGA TACCGGCAATTAC TTTT GTAGTTGGCGGTA TTTTATGCTACAGAT CLI_2896 3049528 - 3048785 - | IS3 family transposase CLI_2897 3049844 - 3050560 + | CoA-transferase, A subunit CLI_2898 3050569 - 3051225 + | CoA-transferase, B subunit TERM 4409 3051422 - 3051379 - T 76 -2.4 -5.86609 | opp_overlap 3051386, overlap 3051381 3051383 TGAAAAAAATAAAAA TATTTGATACCGCCAATTAC TTTT GTAGTTGGCGGTATTTTATG CTACAGATTTCAGAT TERM 4410 3051386 - 3051415 + T 100 -15.9 -4.4648 | opp_overlap 3051383 3051381 3051379 AATAAAAATATTTGA TACCGCCAATTAC TTTT GTAGTTGGCGGTA TTTTATGCTACAGAT TERM 4411 3051691 - 3051672 - T 100 -13.6 -4.4017 | opp_overlap 3051672 TGAAGCGTTATAAAA CCCCATGC ATTT GCATGGGG TTCTTGAACAATCTG TERM 4412 3051672 - 3051691 + T 100 -13.6 -3.63073 | opp_overlap 3051672 TGAAGCGTTATAAAA CCCCATGC ATTT GCATGGGG TTCTTGAACAATCTG CLI_2899 3052376 - 3051807 - | hypothetical protein TERM 4413 3052553 - 3052528 - R 73 -2.6 -5.7946 | opp_overlap 3052521 TGGTGAATAAAAAAA GAAAGCCTAT AAATAA ATATGCCTTC TTTTTTGTATATTCT CLI_2900 3053083 - 3052595 - | xanthine dehydrogenase family protein, iron-sulfur binding protein TERM 4414 3052714 - 3052729 + g 73 -9 -3.10344 | overlap 3052716 GTTCTATTACATGGT CATCCG CATC CGGATG TATATTAGCTAAGGC CLI_2901 3053918 - 3053088 - | xanthine dehydrogenase family protein, FAD-binding subunit CLI_2902 3056245 - 3053915 - | xanthine dehydrogenase family protein, molybdopterin-binding subunit TERM 4415 3054585 - 3054605 + g 78 -10.5 -2.61735 | opp_overlap 3054585, overlap 3054584 GATTTCATAACAGTA GCGGCTAAA CTT TTTAGCTGC CTTATAAGATCTTCA TERM 4416 3056612 - 3056562 - H 90 -12.4 -3.09933 | gap 1, opp_overlap 3056562, overlap 3056564 3056576 TGGTAATGCAGGCAA GACCAAAATAAAGATGGATTTCT TTTATG AGAAATACAT-TTTATTTTGGTC TTTTTTTATTTTTTA TERM 4417 3056562 - 3056612 + H 100 -13.1 -6.28401 | gap 1, opp_overlap 3056562 3056564 3056576 TGGTAATGCAGGCAA GACCAAAATAAAGATGGATTTCTT TTAT GAGAAATACAT-TTTATTTTGGTC TTTTTTTATTTTTTA TERM 4418 3056610 - 3056564 - H 78 -9.2 -3.1085 | gap 1, opp_overlap 3056562, overlap 3056562 3056576 GTAATGCAGGCAAGA CCAAAATAAAGATGGATTTCT TTTATG AGAAATACAT-TTTATTTTGG TCTTTTTTTATTTTT TERM 4419 3057816 - 3057794 - g 83 -3.4 -5.79588 | TTAAAACTAAAAAAA CCATTAATAG CGG CTATGATTGG TGGTGGATGTGCAGG CLI_2903 3056651 - 3058522 + | PTS system, beta-glucoside-specific family, IIABC subunit CLI_2904 3058579 - 3059991 + | glycosy hydrolase family protein CLI_2905 3060030 - 3060863 + | transcription antiterminator TERM 4420 3060964 - 3061011 + T 100 -13.8 -4.53765 | opp_overlap 3060965 3060967, overlap 3060965 3060972 GAATTGTGAAATAAA ATCTAGTAGGATGGAGAATATA GTAT TATATTCTCCATCCTATTAAAA TTTTCTAATATATAT TERM 4421 3061010 - 3060965 - T 100 -17.3 -4.88405 | opp_overlap 3060964 3060965 3060972, overlap 3060967 AATTGTGAAATAAAA TCTAGTAGGATGGAGAATATA GTAT TATATTCTCCATCCTATTAAA ATTTTCTAATATATA TERM 4422 3060965 - 3061010 + T 100 -17.3 -3.31175 | opp_overlap 3060965 3060967, overlap 3060964 3060972 AATTGTGAAATAAAA TCTAGTAGGATGGAGAATATA GTAT TATATTCTCCATCCTATTAAA ATTTTCTAATATATA TERM 4423 3061008 - 3060967 - T 100 -17.7 -2.70452 | opp_overlap 3060965 3060964 3060972, overlap 3060965 TTGTGAAATAAAATC TAGTAGGATGGAGAATATA GTAT TATATTCTCCATCCTATTA AAATTTTCTAATATA TERM 4424 3060972 - 3061003 + T 100 -17.6 -3.16437 | opp_overlap 3060967 3060965, overlap 3060965 3060964 AAATAAAATCTAGTA GGATGGAGAATATA GTAT TATATTCTCCATCC TATTAAAATTTTCTA CLI_2906 3062406 - 3061189 - | monovalent cation:proton antiporter-2 (CPA2) family protein TERM 4425 3061293 - 3061277 - G 72 -8.1 -3.22102 | ATAGGTGTTACAAGA GTAGTTA TTA TAACTAC AAAAACTACTGATCC CLI_2908 3064195 - 3063524 - | HAD family hydrolase TERM 4426 3063864 - 3063879 + g 71 -4.8 -4.6951 | GAAGCAGTAGCGATT GTAAAA GGAA TTTTAC TTTCTTTTAAATAAT CLI_2909 3064929 - 3064399 - | prophage LambdaCh01, N-acetylmuramoyl-L-alanine amidase TERM 4427 3065073 - 3065055 - R 100 -9.6 -5.31456 | opp_overlap 3065053 3065055 TTAATTTATAAAAAA GCCCTTAC ACT GTAAGAGC TCTTTAAGTTATTCT CLI_2910 3065222 - 3065082 - | hypothetical protein TERM 4428 3065619 - 3065593 - R 93 -8.8 -4.8622 | CTTCTTAACCAAAAA GTCCCTCAAA TCTAAAG TCTGAGGGAC ATACAATACTCTTCA CLI_2911 3066744 - 3065710 - | florfenicol/chloramphenicol resistance protein CLI_2912 3068385 - 3066907 - | drug resistance ABC transporter ATP-binding protein TERM 4429 3068609 - 3068573 - R 100 -9.6 -5.64274 | overlap 3068576 TTATTTATAAAAAAA TAAGAGCCGCAAGAAT TAATT ATTCTTACAGCTCATA GATATACGTAGTTAA TERM 4430 3068606 - 3068576 - R 100 -11.3 -4.89054 | overlap 3068573 TTTATAAAAAAATAA GAGCCGCAAGAAT TAATT ATTCTTACAGCTC ATAGATATACGTAGT TERM 4431 3068721 - 3068701 - R 70 -4.8 -4.85396 | opp_overlap 3068701 ATAAGTACAACAAAA TAAACAGA ACACA CCTGTTTA TCTCTGTATTAAATG TERM 4432 3069019 - 3069076 + r 95 -12.5 -3.72576 | gap 1, opp_overlap 3069019 3069032, overlap 3069032 TGCAATTTAAGTAAA TTGTA-GCAATAAAGCCTTCAAAAGT GTATTGG ACTCTTGAAGGCTTTATTGGATACAA TTTGCTAACCCAAAA TERM 4433 3069076 - 3069019 - R 100 -14.7 -3.95986 | gap 1, opp_overlap 3069019 3069032, overlap 3069032 TGCAATTTAAGTAAA TTGTAGC-AATAAAGCCTTCAAAAGT GTATTGG ACTCTTGAAGGCTTTATTGGATACAA TTTGCTAACCCAAAA TERM 4434 3069032 - 3069062 + r 80 -8.4 -4.20783 | opp_overlap 3069019 3069032, overlap 3069019 AATTGTAGCAATAAA GCCTTCAAAAGT GTATTGG ACTCTTGAAGGC TTTATTGGATACAAT TERM 4435 3069062 - 3069032 - R 95 -10.6 -4.25458 | opp_overlap 3069032 3069019, overlap 3069019 AATTGTAGCAATAAA GCCTTCAAAAGT GTATTGG ACTCTTGAAGGC TTTATTGGATACAAT CLI_2913 3070133 - 3069336 - | hypothetical protein TERM 4436 3070235 - 3070210 - R 79 -9.9 -2.73771 | opp_overlap 3070210, overlap 3070209 3070212 GTATACCTTCCAAAT TATCAACTAAG ACAA CTTAGTCGATA TTTATAATTTTTCAT TERM 4437 3070210 - 3070235 + r 78 -7.7 -4.27774 | opp_overlap 3070210 3070209 3070212 GTATACCTTCCAAAT TATCAACTAAG ACAA CTTAGTCGATA TTTATAATTTTTCAT rumA-1 3072542 - 3071181 - | 23S rRNA (uracil-5-)-methyltransferase RumA TERM 4438 3071648 - 3071660 + g 72 -4.9 -4.92783 | CTAAGAAGTCTTTTA CTATA CTA TATAG TTTTTCTGCTCCCTT TERM 4439 3072821 - 3072782 - R 70 -5.2 -4.8048 | opp_overlap 3072785, overlap 3072785 TTTTCATATTAAAAA CAATAATTAAGAGCCCCT TTAC AGATACTCTTAATTATTT ATCCATTCTATTTAT TERM 4440 3072818 - 3072785 - R 75 -6.9 -4.50988 | opp_overlap 3072785, overlap 3072782 TCATATTAAAAACAA TAATTAAGAGCCCCT TTAC AGATACTCTTAATTA TTTATCCATTCTATT CLI_2916 3073275 - 3072829 - | hypothetical protein TERM 4441 3073374 - 3073386 + H 73 -3.5 -5.52384 | TAAATTATATGTTTT TAATA AAT TATTA TTTTTTTAATAAAAA CLI_2917 3073606 - 3075465 + | sulfatase family protein CLI_2918 3075491 - 3076243 + | hypothetical protein TERM 4442 3076385 - 3076442 + T 70 -3 -5.49579 | gap 1, opp_overlap 3076387, overlap 3076387 AATTAATGAAGATTA AAGCAGATATAAGCTAAGATGCAAT AAATTTAAA ATCGC-TCTTAACTTGTATCTGCTC TTTTATTTTTTATCC TERM 4443 3076440 - 3076387 - T 75 -7.8 -3.97209 | gap 1, opp_overlap 3076385 3076387 TTAATGAAGATTAAA GCAGATATAAGCTAAGATGCAAT AAATTTAAA ATCGC-TCTTAACTTGTATCTGC TCTTTTATTTTTTAT TERM 4444 3076467 - 3076511 + T 95 -11.7 -3.524 | gap 2, opp_overlap 3076478 TTATCCGATGACTAC CCGCTCTAATACTCCCATCTT CTTCA AAG-TGGGAGTAA-AGAGCGG TTATGTCCCTGGATA TERM 4445 3076584 - 3076545 - T 73 -8.8 -2.90615 | gap 1, opp_overlap 3076552 3076581, overlap 3076548 3076549 3076551 ATTTCTCCTAAAGGA TAAC-GACTTCTAAGGAGT AAA ACTCCTAAGAATTCTGTTA ATAAGCTTCAGTGGG TERM 4446 3076579 - 3076549 - T 79 -9.8 -2.75769 | opp_overlap 3076552, overlap 3076548 3076545 3076551 CTCCTAAAGGATAAC GACTTCTAAGGAGT AAA ACTCCTAAGAATTC TGTTAATAAGCTTCA TERM 4447 3076552 - 3076576 + T 90 -10.1 -3.71552 | opp_overlap 3076551 3076549 3076548 3076545 CTAAAGGATAACGAC TTCTAAGGAGT AAA ACTCCTAAGAA TTCTGTTAATAAGCT TERM 4448 3076620 - 3076589 - T 100 -17.4 -3.62522 | opp_overlap 3076581, overlap 3076608 GAATTCTGTTAATAA GCTTCAGTGGGAGT AAAA ACTCCCTCTGAAGC CAAGAACTCTGTTTA ribH 3077117 - 3076653 - | 6,7-dimethyl-8-ribityllumazine synthase ribAB 3078354 - 3077149 - | bifunctional riboflavin biosynthesis protein RibAB TERM 4449 3077821 - 3077840 + g 73 -8.6 -3.11687 | opp_overlap 3077820 3077821 TACAAATTCCATAAG CTGTGGCA CTCT TGCCATAG TTCCGTCCTCATTCA ribE 3079348 - 3078662 - | riboflavin synthase subunit alpha ribD 3080426 - 3079329 - | riboflavin biosynthesis protein RibD TERM 4450 3080586 - 3080607 + r 73 -7.3 -4.03234 | opp_overlap 3080586 TTAAATATAAAAAAA TCTCTAGAG TTTC CTCCAGAGA TTTATATACGAAACA TERM 4451 3080607 - 3080586 - R 100 -9.5 -5.88197 | opp_overlap 3080586 TTAAATATAAAAAAA TCTCTAGAG TTTC CTCCAGAGA TTTATATACGAAACA pepD-3 3082266 - 3080830 - | aminoacyl-histidine dipeptidase CLI_2924 3082647 - 3083540 + | metallo-beta-lactamase family protein mgtA 3086376 - 3083731 - | magnesium-translocating P-type ATPase TERM 4452 3085540 - 3085522 - G 77 -4.6 -5.28778 | overlap 3085524 3085525 ACCATTTATAAAAAA TACTATGG GAA CCATAACA AACATAAATTTTATA TERM 4453 3086738 - 3086711 - R 93 -7.1 -5.80951 | opp_overlap 3086711 ATTCAAAATAAAAAA CCTTCGTCA AACTTAAACA TGACGAAGG TATATTAACAACACT TERM 4454 3086961 - 3086978 + r 76 -4.3 -5.39721 | TCAAGAAAATTCATA TAAATTT TTTA AAATTTA TTTTTTATCTGATGA TERM 4455 3087090 - 3087060 - R 78 -9.8 -2.57211 | opp_overlap 3087063, overlap 3087059 3087062 ATGTCCCTGGATAAC GACTTCTAAGGAGT AAA ACTCCTAAGAATTC TGTTAATAAGCTTTA TERM 4456 3087063 - 3087087 + r 90 -10.1 -3.71552 | opp_overlap 3087062 3087060 3087059 TCCCTGGATAACGAC TTCTAAGGAGT AAA ACTCCTAAGAA TTCTGTTAATAAGCT TERM 4457 3087130 - 3087100 - R 79 -9 -3.62522 | GAATTCTGTTAATAA GCTTTAGTGGGAGT AAA ACTCCCTCTGAAAC CAAGAACTCTGTTTA CLI_2926 3087684 - 3087280 - | hypothetical protein TERM 4458 3087750 - 3087711 - R 71 -7 -3.89695 | gap 1, opp_overlap 3087706 3087699 3087711 3087713, overlap 3087706 3087740 CCCTTATAAATAGAA TATCTATAATATTATT-AT ATC ATAAATAATATTATAAATA ATTTGTAAATAATTG CLI_2927 3088872 - 3087787 - | spore germination protein TERM 4459 3090369 - 3090354 - g 75 -4.8 -5.11613 | AGATGATTTAAAAAA TATATC CCAT GATATA CTAGGCAATAATAAA CLI_2928 3088990 - 3090420 + | GerA family spore germination protein CLI_2929 3090498 - 3091592 + | spore germination protein TERM 4460 3091593 - 3091605 + T 70 -3.4 -5.37043 | GATATTATATCATAG GGTT AACAC AACC TTTTTTATATAAAGT purD 3092990 - 3091749 - | phosphoribosylamine--glycine ligase TERM 4461 3092005 - 3092025 + g 76 -6.9 -4.42513 | opp_overlap 3092005 GCTGCTATAACACAA GTGGAATAA GCT TTTTTCCAC TTTATGTTTGTACTT purH 3094638 - 3093139 - | bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase TERM 4462 3094737 - 3094695 - R 81 -10.8 -2.66274 | opp_overlap 3094695, overlap 3094694 TCTGTCATAAGTAAC TGCCACCAATATACCTTCTT TCA AAGAAAACATATAAGTGGCA CTATTTCAATTTACA purN 3095469 - 3094852 - | phosphoribosylglycinamide formyltransferase purM 3096592 - 3095597 - | phosphoribosylaminoimidazole synthetase purF-1 3098212 - 3096764 - | amidophosphoribosyltransferase purC 3099008 - 3098304 - | phosphoribosylaminoimidazole-succinocarboxamide synthase TERM 4463 3098744 - 3098759 + g 72 -4 -5.0133 | overlap 3098742 TAACTATAACTTCTA GTGGAA CTAT TTCTAC TTTTTTGCAAAGCTG purE 3099487 - 3099008 - | phosphoribosylaminoimidazole carboxylase, catalytic subunit TERM 4464 3099559 - 3099523 - R 75 -3.8 -5.51046 | gap 1 TAAATATATAAAAAA TTCCGC-TAAGATTTCT ATGG AGAATCCTAAAGCGGAA CTTAAGCGCACTGCA TERM 4465 3100045 - 3100012 - R 100 -10.3 -5.1848 | AATGAAGGTAAAAAA CCGATGGCCAAGCCA CACA TAGCTTTTCCATCGG GTAAAAAATTTTTAA CLI_2937 3102725 - 3100170 - | xanthine dehydrogenase family protein, molybdopterin-binding subunit TERM 4466 3101371 - 3101357 - G 70 -8.6 -2.59298 | opp_overlap 3101357, overlap 3101354 TATCTGATATAATAT CTGCTT TAA AAGCAG TTAAATTTCCTTTTT TERM 4467 3101357 - 3101371 + g 76 -8.6 -3.38096 | opp_overlap 3101357 3101354 TATCTGATATAATAT CTGCTT TAA AAGCAG TTAAATTTCCTTTTT TERM 4468 3102295 - 3102308 + g 83 -6.7 -5.093 | CTAAATGCCTCTGCT GCCAT TTCA ATGGC TTTTATTATTTTCAC TERM 4469 3102989 - 3102942 - R 73 -2.2 -5.67063 | gap 1, opp_overlap 3102944 3102949, overlap 3102949 3102957 TTTATGATAAAAAAA TGTATAATGAAGAAATGGAGATA AAT TTTCTCCATTTCATCATT-TATT TTTATTATTTAAAAT TERM 4470 3102944 - 3102987 + r 100 -9.2 -5.38549 | gap 1, opp_overlap 3102942 3102949 3102957, overlap 3102949 TATGATAAAAAAATG TATAATGAAGAAATGGAGATA AAT TTTCTCCATTTCATCATT-TA TTTTTATTATTTAAA TERM 4471 3102983 - 3102949 - R 95 -11.6 -3.6185 | opp_overlap 3102944 3102949, overlap 3102942 3102957 TAAAAAAATGTATAA TGAAGAAATGGAGATA AAT TTTCTCCATTTCATCA TTTATTTTTATTATT TERM 4472 3102949 - 3102983 + r 100 -11.6 -5.11254 | opp_overlap 3102949 3102942 3102957, overlap 3102944 TAAAAAAATGTATAA TGAAGAAATGGAGATA AAT TTTCTCCATTTCATCA TTTATTTTTATTATT TERM 4473 3102975 - 3102957 - R 70 -6 -4.36596 | opp_overlap 3102949 3102944, overlap 3102949 3102942 TGTATAATGAAGAAA TGGAGATA AAT TTTCTCCA TTTCATCATTTATTT CLI_2938 3104304 - 3103087 - | peptidase CLI_2939 3105658 - 3104330 - | putative chlorohydrolase/aminohydrolase TERM 4474 3104383 - 3104404 + g 78 -6.7 -4.68545 | overlap 3104384 TTCTAGCCATAACTC TTTCTTCAT CAAC ATGAAGAAG TTTTCTGTCTTCCAT TERM 4475 3104384 - 3104403 + g 71 -8 -3.40043 | overlap 3104383 TCTAGCCATAACTCT TTCTTCAT CAAC ATGAAGAA GTTTTCTGTCTTCCA CLI_2940 3108706 - 3105689 - | putative selenate reductase subunit YgfK TERM 4476 3107974 - 3107993 + g 89 -4.4 -5.88565 | opp_overlap 3107989, overlap 3107970 3107989 AAAGAGTTGGATTCA TCTTTATA AAAG TATGAAGA TTTTTTTCTTCTAAA CLI_2941 3109938 - 3108742 - | hypothetical protein TERM 4477 3110161 - 3110104 - R 100 -17.1 -2.59069 | opp_overlap 3110113 3110113 3110126, overlap 3110113 3110126 3110133 ATTTAGAAAAATTAC CTCAATAAATTTATTATTAAAATGATA AATT TATCATTTTAATAATAAATTTACTAAA TGTTATAAATATTCG TERM 4478 3110152 - 3110113 - R 100 -15.6 -4.19336 | opp_overlap 3110113 3110113 3110126, overlap 3110104 3110126 3110133 AATTACCTCAATAAA TTTATTATTAAAATGATA AATT TATCATTTTAATAATAAA TTTACTAAATGTTAT TERM 4479 3110113 - 3110152 + r 100 -15.6 -3.79882 | opp_overlap 3110113 3110104 3110126 3110133, overlap 3110113 3110126 AATTACCTCAATAAA TTTATTATTAAAATGATA AATT TATCATTTTAATAATAAA TTTACTAAATGTTAT TERM 4480 3110257 - 3110232 - R 95 -7 -5.9003 | opp_overlap 3110232 AAATTAAGAAAAAAA GAACCTTTTG AATCTA CAAAAAGTTC TTTATAATCACAAAA hydA 3111674 - 3110280 - | dihydropyrimidinase TERM 4481 3110531 - 3110551 + g 73 -5.5 -4.66264 | overlap 3110533 CTGCAATTGTTCCTT TTTTTGGAT ATA ATCCAAATA TTTTTGCAGGTTTTG TERM 4482 3110533 - 3110549 + g 79 -8.1 -3.9318 | overlap 3110531 GCAATTGTTCCTTTT TTTGGAT ATA ATCCAAA TATTTTTGCAGGTTT CLI_2943 3113130 - 3111724 - | xanthine/uracil permease family protein TERM 4483 3111882 - 3111900 + g 71 -7.5 -3.83205 | opp_overlap 3111879 3111882 3111881 CGCTGTGGAAAAGAG TTTCCAC CCATT GTGGAAA TTTACTATAAAAAGT TERM 4484 3112986 - 3112968 - G 71 -7.5 -3.76888 | opp_overlap 3112968 3112967, overlap 3112966 CATTTATAAGAAATA TTGTCTG TTCTG CAGACAA ATTTAGTGCACCACC dpaL 3114363 - 3113152 - | diaminopropionate ammonia-lyase TERM 4485 3114536 - 3114512 - R 82 -3 -6.25578 | opp_overlap 3114512 ATCAAATAAAAAAAA TACAAAGT CTATTATCT ACTTTGTA TCTTTTATTATTAAA TERM 4486 3114659 - 3114643 - R 70 -4.5 -4.97461 | opp_overlap 3114643 3114644, overlap 3114636 AATAAATATTAAAAA CTTATCA CTT TGATAAA TTTTTTATCCCCTCT CLI_2945 3116410 - 3114647 - | sigma-54 dependent transcriptional regulator TERM 4487 3116526 - 3116540 + H 76 -2.9 -5.90981 | overlap 3116518 TTTTAACTATGCTAT TTATC AATAG GATAA TTTTTTTTAATATAC CLI_2946 3116774 - 3117511 + | hypothetical protein TERM 4488 3117747 - 3117736 - g 75 -5.8 -4.78848 | GTCTTAAATACAAAA GCCT ATAA AGGC CAAAGTCAATCTATA CLI_2947 3117526 - 3118140 + | hypothetical protein CLI_2948 3118121 - 3118969 + | hypothetical protein TERM 4489 3119623 - 3119613 - g 70 -4 -4.87803 | opp_overlap 3119613 CATTTCTAAAGAAAA CTTT AAA AAAG TATTTGCCCCTATTG CLI_2949 3118951 - 3119760 + | putative xanthine dehydrogenase accessory factor CLI_2950 3119786 - 3120331 + | hypothetical protein CLI_2951 3120328 - 3121296 + | iron chelate ABC transporter permease protein CLI_2952 3121293 - 3122087 + | iron chelate ABC transporter ATP-binding protein TERM 4490 3122230 - 3122201 - f 95 -11.5 -3.56568 | overlap 3122219 TAACCATTTCCTAAA CTTCAGTGGAAGT AAAA ACTCCCTCTGAAG CCAAGAGCTCTGTTT TERM 4491 3122800 - 3122779 - g 85 -3.7 -5.68438 | opp_overlap 3122787, overlap 3122787 TTATTAAATAAAAAA GAGAAAGCT AAAG AACTTGCTC TTTATTGTGAAAAGA CLI_2953 3122266 - 3123324 + | putative iron chelate uptake ABC transporter, solute-binding protein TERM 4492 3123361 - 3123333 - f 100 -8.3 -5.85425 | opp_overlap 3123333 TAAATAAACAAAAAA TCCTAGTTCATTC AAT AAATGAATTAGGA TTTTTCTACTTTTTA TERM 4493 3123333 - 3123361 + F 100 -9.8 -5.1286 | opp_overlap 3123333 TAAATAAACAAAAAA TCCTAGTTCATT CAATA AATGAATTAGGA TTTTTCTACTTTTTA CLI_2954 3123462 - 3123794 + | hypothetical protein CLI_2955 3123922 - 3124494 + | GDSL family lipase/acylhydrolase CLI_2956 3125201 - 3124608 - | hypothetical protein TERM 4494 3124805 - 3124820 + g 71 -4.8 -4.76963 | AATTATTATCTTCCA TTTTCT TTTT AGAAAA TTTTATATTCTCTAG TERM 4495 3125108 - 3125128 + g 79 -8.5 -3.97139 | opp_overlap 3125108 TAAATTCAAAGTATA TTATTTTAG AAG CTAAAATAA TTATTATTAAAATTA TERM 4496 3125536 - 3125594 + r 72 -6 -4.50993 | gap 3, opp_overlap 3125545, overlap 3125545 ACATATAGCTTCCTT TA-AT-T-CAAATATAGCCTAAAGAACTA TTAA TAGTTCTTTAGGCTATATTTATATATATA TTTATATTTATTTAG TERM 4497 3125545 - 3125582 + r 100 -20.3 -4.21994 | opp_overlap 3125545, overlap 3125536 TTCCTTTAATTCAAA TATAGCCTAAAGAACTA TTAA TAGTTCTTTAGGCTATA TTTATATATATATTT TERM 4498 3125582 - 3125545 - R 100 -20.3 -3.75153 | opp_overlap 3125545 3125536 TTCCTTTAATTCAAA TATAGCCTAAAGAACTA TTAA TAGTTCTTTAGGCTATA TTTATATATATATTT CLI_2957 3127044 - 3125602 - | xanthine/uracil permease family protein TERM 4499 3127458 - 3127429 - R 95 -11.1 -3.76411 | opp_overlap 3127415 3127414 3127427 3127424 TTAAAATTATTCAAA TTTTAGTTTTATA GTTC TATAAAACTAAAA GATAATGTTTTTATA TERM 4500 3127559 - 3127533 - R 100 -13.2 -4.64383 | opp_overlap 3127528 3127527 AAGTACAAATTAAAA TTCAGATAGAGT AAA ACTCCATCTGAA TTAAACTTTTATTTA CLI_2958 3128985 - 3127633 - | sodium:alanine symporter family protein TERM 4501 3128780 - 3128797 + g 73 -8.5 -3.45527 | opp_overlap 3128779, overlap 3128777 GCTGTTGCTAATGAT TGGAATG AACT CATTCCA TCTTTACCTGCTTTT TERM 4502 3129544 - 3129587 + r 79 -10 -2.67973 | opp_overlap 3129544, overlap 3129546 3129565 3129567 ATTTTACTTATATAA TAGTCAATAAATTAATGATT TTTT AATTGTTAAATTATTGACTA TCCTATCCATTATGT TERM 4503 3129670 - 3129687 + r 100 -9.9 -6.11229 | AACCCATTACTCCCC TCCGCAT TTAA ATGCGGA TTTTTTTATTTTACT CLI_2959 3132226 - 3129935 - | putative helicase TERM 4504 3131237 - 3131257 + g 70 -4.1 -4.98352 | TAAAGAACCTTTTAA TTTATTACT ATT AGTTATAAA TTTGTTTTCTTTGCT TERM 4505 3132459 - 3132432 - R 100 -9.4 -5.74288 | opp_overlap 3132457, overlap 3132457 ATAAACAATAAAAAA TAGTGCAATAAA AAAC TTTATTACACTA TAAGATATTATAGAT adh 3133587 - 3132526 - | NADP-dependent alcohol dehydrogenase TERM 4506 3133770 - 3133780 + r 81 -5.4 -5.41143 | opp_overlap 3133758 3133770, overlap 3133757 3133758 3133779 TATTGTTGCATTTAA CAAC ATT GTTG TTTTTTTAAACACTA CLI_2961 3135709 - 3133811 - | sigma-54 dependent trancsriptional regulator TERM 4507 3134027 - 3134015 - G 75 -4.9 -5.14563 | opp_overlap 3134008 3134015 TTGCTTATCAAAAAA TTTTG TTT CAAAA TTTAAAGAAACATTT TERM 4508 3135631 - 3135643 + g 85 -4.9 -5.626 | TAATAATTGTAGTAG GAAAA ATT TTTTC TTTTTTTATACCATA TERM 4509 3135842 - 3135815 - R 86 -3.6 -6.12328 | gap 1, opp_overlap 3135821 ATAACACAAAAAAAA TCTATG-CTAACC ATT AGTTAATCATAGA TTTTTTTATAATTCA trmU-2 3137057 - 3135996 - | tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase TERM 4510 3137677 - 3137689 + r 70 -4.9 -4.76191 | overlap 3137668 TTTTAAGTTGTAATT TACTA CTG TAGTA TTTCTTTTAATATAT CLI_2963 3139310 - 3137679 - | M20 family peptidase TERM 4511 3138378 - 3138397 + g 72 -2.9 -5.42131 | gap 1 TATATCCTTTAAATT CTCCATGA TTTCT TC-TGGAG TTTTTTGTATAGTTA CLI_2964 3139807 - 3139310 - | hypothetical protein CLI_2965 3140141 - 3141466 + | HlyC/CorC family protein TERM 4512 3141497 - 3141472 - T 100 -9.1 -5.54894 | opp_overlap 3141473 3141478, overlap 3141473 AAGTGAGTAAAAAAA GTAGAACCTCT ATTT AGAGGTTCTAT AAAATTAAAGTACAT TERM 4513 3141496 - 3141473 - T 100 -12.6 -3.9131 | opp_overlap 3141473 3141478, overlap 3141472 AGTGAGTAAAAAAAG TAGAACCTCT ATTT AGAGGTTCTA TAAAATTAAAGTACA CLI_2966 3142108 - 3141818 - | hypothetical protein thiC 3143440 - 3142127 - | thiamine biosynthesis protein ThiC purF-2 3145027 - 3143651 - | amidophosphoribosyltransferase TERM 4514 3145104 - 3145079 - R 91 -4.7 -6.02919 | overlap 3145083 TTAGAAATAAAAAAA TAAAGCCCACC CGAA GGTAAGCTTTT TATACTATATATAAT TERM 4515 3145100 - 3145083 - R 81 -5.5 -5.36181 | overlap 3145079 AAATAAAAAAATAAA GCCCACC CGAA GGTAAGC TTTTTATACTATATA CLI_2969 3145571 - 3145290 - | hypothetical protein CLI_2970 3146316 - 3145627 - | hypothetical protein CLI_2971 3146968 - 3146318 - | hypothetical protein CLI_2972 3147831 - 3146974 - | ABC transporter, ATP-binding protein CLI_2973 3148409 - 3148038 - | GntR family transcriptional regulator TERM 4516 3148434 - 3148468 + H 100 -15.4 -5.61596 | opp_overlap 3148440 3148449, overlap 3148436 CCTTACCTTATATCG TACATACTGTATATAT ATA ATATATACAGTATGTG TTTTTTTGTCAACCT TERM 4517 3148436 - 3148466 + H 100 -15.8 -4.45201 | opp_overlap 3148440 3148449, overlap 3148434 TTACCTTATATCGTA CATACTGTATATAT ATA ATATATACAGTATG TGTTTTTTTGTCAAC TERM 4518 3148462 - 3148440 - H 82 -10.8 -2.90763 | opp_overlap 3148436 3148434, overlap 3148449 CTTATATCGTACATA CTGTATATAT ATA ATATATACAG TATGTGTTTTTTTGT TERM 4519 3148810 - 3148839 + H 95 -5.9 -6.02919 | gap 1, opp_overlap 3148811 GCACCGCGAATATAA TCTTC-GTCCTAAT GAT ATTAGGATAGAGGA TTTTTTTATTTGTAA TERM 4520 3148931 - 3148878 - H 93 -9.5 -4.46073 | opp_overlap 3148871 3148878, overlap 3148921 3148930 TTGCAACATAAGAAA TATTTTTAATATGTTAATTTAAATA AATT TTTCTAAATTAAGATATTAAAAATA AAAATATCATCTTTA CLI_2974 3149108 - 3149620 + | hypothetical protein TERM 4521 3150003 - 3150028 + F 100 -16.3 -5.03405 | TTATTGTGTTTTCAA CTCCCCTTAAG GTTA CTTAAGGGGAG TTTTTATGTGCTATT TERM 4522 3150732 - 3150755 + G 75 -7.4 -4.18494 | CCGGCCATGTTTTCC CACTTCGTGC CCGT GCAGGAGGTG TTTTAACTAGACCTG ribB 3150317 - 3150958 + | 3,4-dihydroxy-2-butanone 4-phosphate synthase TERM 4523 3151111 - 3151095 - T 72 -8.1 -3.14468 | opp_overlap 3151088 TGGCAGCAGAGCTAA GTAAACA TCC TGTTTAC TTCACACTTAAATAT CLI_2976 3152310 - 3151567 - | iron-sulfur cluster-binding protein TERM 4524 3152409 - 3152426 + H 89 -4.3 -6.10295 | overlap 3152416 3152418 AATTTATGGAGGGGT TATTTTT TATG AAAAATA TTTTTTTTATATTAA CLI_2977 3152417 - 3153094 + | cyclic nucleotide-binding protein CLI_2978 3153183 - 3153626 + | putative cell wall hydrolase CLI_2979 3153649 - 3154170 + | hypothetical protein TERM 4525 3154251 - 3154287 + T 73 -4.6 -5.10154 | gap 1, opp_overlap 3154246 3154251 TGCAAGCATACAAAA GCTATGAAA-TTAAGGT ATTA ACCCTATTTTTCATAGC TTTTTCATTTTAAAT TERM 4526 3154287 - 3154251 - T 77 -6.8 -4.614 | gap 1, opp_overlap 3154251, overlap 3154246 TGCAAGCATACAAAA GCTATGAA-ATTAAGGT ATTA ACCCTATTTTTCATAGC TTTTTCATTTTAAAT CLI_2980 3154745 - 3154401 - | hypothetical protein CLI_2981 3157024 - 3154862 - | putative phage infection protein TERM 4527 3157239 - 3157188 - R 100 -12.1 -4.32402 | gap 1, opp_overlap 3157200, overlap 3157185 3157191 TTCTAAGCAAAACAA TAAGGCCTAA-AATTTAATAGCAT AAATA ATGCTATTAAATTCTTAGACCTAA ACCTATTCAATATCT TERM 4528 3157236 - 3157191 - R 100 -13.8 -4.26559 | gap 1, opp_overlap 3157200, overlap 3157188 3157185 TAAGCAAAACAATAA GGCCTAA-AATTTAATAGCAT AAATA ATGCTATTAAATTCTTAGACC TAAACCTATTCAATA TERM 4529 3157200 - 3157226 + r 83 -9.7 -3.63515 | opp_overlap 3157191 3157188 3157185 CAATAAGGCCTAAAA TTTAATAGCAT AAATA ATGCTATTAAA TTCTTAGACCTAAAC TERM 4530 3157298 - 3157272 - R 85 -9.8 -3.18634 | opp_overlap 3157274 3157276 3157278, overlap 3157270 3157268 ATTTTAACTAATACA TATATATTTATT CAT AATAAATATATA TTAAAATCTTCACCC CLI_2982 3158085 - 3157333 - | glycerophosphoryl diester phosphodiesterase family protein TERM 4531 3157391 - 3157412 + g 78 -3.1 -5.55001 | TAAGCCCTATCAGGA TAATTAGTA ATGA TGCTAGTTA TTTTATTTTTTATTA TERM 4532 3157783 - 3157814 + g 71 -2.4 -5.34055 | overlap 3157785 AATCTCTGTATCTTT TATTAGCTTTAGAA GTTC TTCTAAAGTAGGTA TTTTTTCATCTTTAT TERM 4533 3158248 - 3158192 - R 100 -28.7 -3.03203 | opp_overlap 3158194 3158202, overlap 3158196 3158202 AAAATAAAAAAGTTA TATACCAAAAGAGGTGTATCAAAATAA ATT TAATTTTGATACACCTCTTTTGGTATA GGTTAAATTGATGTA TERM 4534 3158194 - 3158246 + r 100 -26.9 -2.57489 | opp_overlap 3158192 3158196 3158202, overlap 3158202 AATAAAAAAGTTATA TACCAAAAGAGGTGTATCAAAATAA ATT TAATTTTGATACACCTCTTTTGGTA TAGGTTAAATTGATG TERM 4535 3158244 - 3158196 - R 100 -25.1 -3.0458 | opp_overlap 3158194 3158202, overlap 3158192 3158202 TAAAAAAGTTATATA CCAAAAGAGGTGTATCAAAATAA ATT TAATTTTGATACACCTCTTTTGG TATAGGTTAAATTGA TERM 4536 3158238 - 3158202 - R 100 -16.9 -4.39568 | opp_overlap 3158194 3158202, overlap 3158196 3158192 AGTTATATACCAAAA GAGGTGTATCAAAATAA ATT TAATTTTGATACACCTC TTTTGGTATAGGTTA TERM 4537 3158202 - 3158238 + r 100 -16.9 -4.36931 | opp_overlap 3158202 3158196 3158192, overlap 3158194 AGTTATATACCAAAA GAGGTGTATCAAAATAA ATT TAATTTTGATACACCTC TTTTGGTATAGGTTA CLI_2983 3159426 - 3158464 - | TPR domain-containing protein TERM 4538 3158848 - 3158858 + g 76 -2.6 -5.66338 | ATCTTTCTTTTCTTT TAAA GTT TTTA TTTTTTGTTGTCTTT CLI_2984 3159888 - 3161141 + | decarboxylase family protein TERM 4539 3161226 - 3161181 - T 100 -10.6 -4.97957 | TATAGAATAATAAAA GGGTACATAGGTAGATTTGT TTTTAC ACATATCCACCTACACACCC TAAAATTAAACTTCT CLI_2985 3162551 - 3161232 - | CBS/transporter associated domain-containing protein TERM 4540 3162410 - 3162422 + g 80 -6.3 -4.90321 | overlap 3162409 CTTTTTTGTTTCCTT CTTCT GAA AGAAG TTTTATCTTATTTTT TERM 4541 3162765 - 3162745 - R 100 -9.8 -5.95539 | opp_overlap 3162745 CCGTAAATAAAAAAA CACTAGGT ATAAA ACCTAGTG TTTTCAATGGCACGA TERM 4542 3162745 - 3162765 + r 93 -9.8 -4.18018 | opp_overlap 3162745 CCGTAAATAAAAAAA CACTAGGT ATAAA ACCTAGTG TTTTCAATGGCACGA CLI_2986 3163935 - 3163201 - | hypothetical protein TERM 4543 3164076 - 3164048 - R 90 -6.9 -5.80248 | opp_overlap 3164048 GAATATATAAAAAAA TAGAAACGAGT ACATTAA ACTCATTTCTA TTTATACTTGTAGGG CLI_2987 3164877 - 3164074 - | hypothetical protein TERM 4544 3164318 - 3164329 + g 70 -5.8 -4.33819 | TTATTAAAATAATCT TGGC CACT GCCA TTTATTATAGCTACT TERM 4545 3164608 - 3164618 + g 72 -2.6 -5.41143 | TATATCATTTTTTAT TAAT TCT ATTA TTTTTTTACCCAATA CLI_2988 3165557 - 3164868 - | hypothetical protein CLI_2989 3166520 - 3165633 - | hypothetical protein TERM 4546 3166593 - 3166577 - R 100 -5.1 -6.82077 | opp_overlap 3166577 AGTAAAAAAAAAAAA GCACC TTATATT GGTGC ATTAATCTAAATAAT rpoD 3167680 - 3166595 - | RNA polymerase sigma factor RpoD dnaG 3169477 - 3167705 - | DNA primase TERM 4547 3167952 - 3167974 + g 89 -4.2 -5.8901 | opp_overlap 3167957, overlap 3167953 3167955 GTTTCTACATTCTTA TTACATAGAG TTT CTATGTGTAA TTTTTTATTTTGTAT TERM 4548 3168581 - 3168598 + g 75 -7.1 -4.07868 | CCCTGCTGTATCTGA GTCATAA GATA TTATGAC TTTATCTGCATATCG CLI_2992 3170788 - 3169760 - | deoxyguanosinetriphosphate triphosphohydrolase-like protein TERM 4549 3171481 - 3171507 + G 71 -6.8 -3.95554 | opp_overlap 3171496, overlap 3171479 3171481 3171489 AGATAAATTCTCTGA TTTTTTTCTAAA AAA TTTTGAAAAAAA TATTTTATTGGCTAG CLI_2993 3170930 - 3172000 + | spore coat protein-like protein TERM 4550 3172036 - 3172005 - T 100 -8.8 -5.27399 | opp_overlap 3172004 3172007 TAATATATTAAAAAA GATGTAAGCCAATT TTAC ACTAGGCTTACATC CCTTATACTTATACT ppdK 3174686 - 3172053 - | pyruvate phosphate dikinase TERM 4551 3172267 - 3172296 + g 83 -10.9 -2.95322 | opp_overlap 3172264 3172267, overlap 3172257 3172264 3172262 AGCTTCCCAACACCA GTTTGGTCTATTC TTTG GAATGGATCAAAC TCATATATTTTTTTA TERM 4552 3173234 - 3173246 + g 75 -4.9 -5.05505 | opp_overlap 3173220, overlap 3173220 ATTTTCCTGCTGCAT GAAAA TAT TTTTC TTTTTCATTTATAGT TERM 4553 3174733 - 3174750 + r 70 -7.1 -3.67737 | AATTTAATATATATT CAGATAA GTAA TTATCTG TTTCAAACTTTTATC CLI_2995 3175407 - 3174766 - | CBS domain-containing protein TERM 4554 3175939 - 3175949 + r 78 -5.4 -5.10077 | TCTTCTTTTTTTTCT GAAG AAT CTTC TTTTTTACACTCTTT CLI_2996 3176537 - 3175917 - | UBA/TS-N domain-containing protein TERM 4555 3176086 - 3176099 + g 74 -2.4 -5.58522 | opp_overlap 3176086 TCTTTTATATCAGAA GTAG TGCAAT CTAC TTTTTCTTTTATATC era 3178206 - 3177316 - | GTP-binding protein Era cdd 3178620 - 3178222 - | cytidine deaminase CLI_3000 3179402 - 3178704 - | diacylglycerol kinase/PAP2 family protein CLI_3001 3179943 - 3179443 - | putative metalloprotease CLI_3002 3182027 - 3179940 - | putative hydrolase CLI_3003 3183210 - 3182050 - | putative stage IV sporulation protein TERM 4556 3182206 - 3182219 + g 72 -2.5 -5.3671 | ATCTAAGTTTTTAGT TATAT TTTT ATATA TTTTTTCATTCTCTT TERM 4557 3182996 - 3182973 - G 71 -3.2 -5.26119 | opp_overlap 3182976, overlap 3182976 TTTTTAAAAATAAAA TAAGAAAAGA GATT CCTTTTCTTT TTACTATTTTTACTT TERM 4558 3182993 - 3182976 - G 71 -4.9 -4.70511 | opp_overlap 3182976, overlap 3182973 TTAAAAATAAAATAA GAAAAGA GATT CCTTTTC TTTTTACTATTTTTA TERM 4559 3182976 - 3182993 + g 72 -4.2 -5.02231 | opp_overlap 3182976 3182973 TTAAAAATAAAATAA GAAAAG AGATTC CTTTTC TTTTTACTATTTTTA yqfC 3183496 - 3183200 - | sporulation protein YqfC TERM 4560 3183543 - 3183518 - R 90 -5.6 -5.95539 | opp_overlap 3183518 3183520, overlap 3183520 CCTCAAATAAAAAAA TACTTTCATA TTAATT TATGAAAGCA TTTTTTAATAAATGA TERM 4561 3183541 - 3183520 - R 74 -6 -4.61687 | opp_overlap 3183518 3183520, overlap 3183518 TCAAATAAAAAAATA CTTTCATA TTAATT TATGAAAG CATTTTTTAATAAAT TERM 4562 3183583 - 3183609 + r 83 -11 -2.67934 | opp_overlap 3183588, overlap 3183588 CTATGTATATAATAT AAAAAGCTGAGT TTT ACTCAGCTTTTA CTATTTACTCAATAT TERM 4563 3183588 - 3183604 + r 100 -10.9 -4.51363 | opp_overlap 3183588, overlap 3183583 TATATAATATAAAAA GCTGAGT TTT ACTCAGC TTTTACTATTTACTC TERM 4564 3183604 - 3183588 - R 100 -10.9 -5.1764 | opp_overlap 3183588 3183583 TATATAATATAAAAA GCTGAGT TTT ACTCAGC TTTTACTATTTACTC CLI_3005 3184056 - 3183610 - | GatB/Yqey domain-containing protein rpsU 3184275 - 3184099 - | 30S ribosomal protein S21 CLI_3007 3184756 - 3184412 - | HIT family protein CLI_3008 3186111 - 3184813 - | RNA modification protein CLI_3009 3186869 - 3186111 - | hypothetical protein prmA 3187905 - 3186967 - | ribosomal protein L11 methyltransferase TERM 4565 3187524 - 3187551 + g 72 -4.3 -5.11937 | GCTTTATAACTATTT TATTAGAAACC TTAGTT GGTTTATAATA TTTTTTCCAATTATT TERM 4566 3188049 - 3187997 - R 100 -12.2 -3.91434 | gap 1, opp_overlap 3187998 3187999 3188001 3188009, overlap 3187999 3188002 AAATCACTTTATAAA CAGAGTTCTTGGCTTCAGAGGGAGT TTTT ACTCCCTCTAAAGCTTAGAAATC-G TTATCCAGGGACGTA TERM 4567 3187998 - 3188049 + r 93 -12.4 -3.28924 | opp_overlap 3187997 3187999 3188002, overlap 3187999 3188001 3188009 AATCACTTTATAAAC AGAGTTCTTGGCTTCAGAGGGAGT TTTT ACTCCCTCTAAAGCTTAGAAATCG TTATCCAGGGACGTA TERM 4568 3187999 - 3188048 + r 100 -15.9 -2.57211 | opp_overlap 3187997 3187999 3188002, overlap 3187998 3188001 3188009 ATCACTTTATAAACA GAGTTCTTGGCTTCAGAGGGAGT TTTT ACTCCCTCTAAAGCTTAGAAATC GTTATCCAGGGACGT TERM 4569 3188048 - 3187999 - R 100 -15.9 -3.54 | opp_overlap 3187999 3187998 3188001 3188009, overlap 3187997 3188002 ATCACTTTATAAACA GAGTTCTTGGCTTCAGAGGGAGT TTTT ACTCCCTCTAAAGCTTAGAAATC GTTATCCAGGGACGT TERM 4570 3188001 - 3188046 + r 91 -12.7 -2.82623 | opp_overlap 3187999 3187997 3188002, overlap 3187999 3187998 3188009 CACTTTATAAACAGA GTTCTTGGCTTCAGAGGGAGT TTTT ACTCCCTCTAAAGCTTAGAAA TCGTTATCCAGGGAC TERM 4571 3188045 - 3188002 - R 100 -16.2 -2.60065 | opp_overlap 3188001 3187999 3187998 3188009, overlap 3187999 3187997 ACTTTATAAACAGAG TTCTTGGCTTCAGAGGGAGT TTTT ACTCCCTCTAAAGCTTAGAA ATCGTTATCCAGGGA TERM 4572 3188110 - 3188066 - R 100 -16 -3.08133 | gap 1, opp_overlap 3188076 TATCCAGGGACGTAA CCGCTCT-TTACTCCCACTTT GAAG AAAATGGGAGTATTAGAGCGG GTAGTCATCGGATAA TERM 4573 3188076 - 3188099 + r 71 -8.2 -3.02144 | opp_overlap 3188066 CGTAACCGCTCTTTA CTCCCACTTT GAAG AAAATGGGAG TATTAGAGCGGGTAG TERM 4574 3188177 - 3188218 + r 76 -8.3 -3.78922 | gap 1, opp_overlap 3188182, overlap 3188182 3188187 3188192 TCTTAAAATCCACCA CA-AAATATAAGGAAAGTGC GTT GCACTTTCCTTATATTAATC TTTGAATCCTTTTTT TERM 4575 3188212 - 3188182 - R 100 -18.6 -4.49344 | opp_overlap 3188177 3188182 3188187 3188192 AAATCCACCACAAAA TATAAGGAAAGTGC GTT GCACTTTCCTTATA TTAATCTTTGAATCC TERM 4576 3188182 - 3188212 + r 100 -18.6 -3.47029 | opp_overlap 3188182, overlap 3188177 3188187 3188192 AAATCCACCACAAAA TATAAGGAAAGTGC GTT GCACTTTCCTTATA TTAATCTTTGAATCC TERM 4577 3188187 - 3188207 + r 100 -14.1 -3.77775 | opp_overlap 3188182, overlap 3188182 3188177 3188192 CACCACAAAATATAA GGAAAGTGC GTT GCACTTTCC TTATATTAATCTTTG TERM 4578 3188192 - 3188202 + r 71 -6.8 -4.08823 | opp_overlap 3188182, overlap 3188187 3188182 3188177 CAAAATATAAGGAAA GTGC GTT GCAC TTTCCTTATATTAAT dnaJ 3189358 - 3188213 - | chaperone protein DnaJ TERM 4579 3189055 - 3189038 - G 78 -6.3 -4.81212 | overlap 3189040 TCCACCAGAAGAAAA TCCTCCT CCAA AGAAGGA ATCAAATATGTCTCC TERM 4580 3189420 - 3189450 + r 93 -12.1 -3.22894 | gap 1, opp_overlap 3189420, overlap 3189424 GTTTTTGTACTTAAA TTAAGGGA-GGAGT ACAA ACTCCCTCCCTTAA TTCATACCTATTATA TERM 4581 3189450 - 3189420 - R 95 -12.1 -3.64703 | gap 1, opp_overlap 3189420 3189424 GTTTTTGTACTTAAA TTAAGGGA-GGAGT ACAA ACTCCCTCCCTTAA TTCATACCTATTATA TERM 4582 3189424 - 3189446 + r 74 -8.5 -3.41134 | gap 1, opp_overlap 3189420, overlap 3189420 TTGTACTTAAATTAA GGGA-GGAGT ACAA ACTCCCTCCC TTAATTCATACCTAT dnaK 3191372 - 3189501 - | molecular chaperone DnaK TERM 4583 3189946 - 3189971 + g 71 -5.5 -4.47307 | TCTGTTAAATTTGTT GAAGCTGTTAT TGTT ATATTAGCTTC TTTTCCTGTTCCTTT grpE 3192071 - 3191427 - | co-chaperone GrpE hrcA 3193129 - 3192098 - | heat-inducible transcription repressor CLI_3015 3194472 - 3193330 - | coproporphyrinogen III oxidase TERM 4584 3194285 - 3194264 - G 100 -10.9 -4.32857 | opp_overlap 3194260 3194258 GCCTCTAAAGATAAA TAGGTGGGA GTAC CCCCACCTA TAAATATTGTTTTTA lepA 3196307 - 3194499 - | GTP-binding protein LepA TERM 4585 3195341 - 3195359 + g 85 -8.2 -4.5774 | CTGCATCATTTACTT GAAGCTTT TCT AAGGCTTC TTTTAATTCTTCATA CLI_3017 3196843 - 3196448 - | hypothetical protein CLI_3018 3198004 - 3196913 - | stage II sporulation protein gpr 3199152 - 3198178 - | germination protease TERM 4586 3199172 - 3199212 + H 73 -5.8 -4.83593 | opp_overlap 3199183, overlap 3199183 ACATCCTCCTAAATC TCTTTAAAAAATATATTT TTTCT AAATATATTTTTTACTGA TTTTTCATAATTATT TERM 4587 3199419 - 3199393 - g 71 -6 -4.44914 | opp_overlap 3199398 3199415, overlap 3199398 3199408 3199415 CAGCTAAGAAAAGAA TAAAAGTTATAG AAA CTAAAACTCTTA GAAATAAGATGTTAA TERM 4588 3199414 - 3199398 - g 70 -3.7 -5.14949 | opp_overlap 3199398, overlap 3199393 3199408 AAGAAAAGAATAAAA GTTATAG AAA CTAAAAC TCTTAGAAATAAGAT TERM 4589 3199476 - 3199450 - g 82 -7.4 -4.73388 | AATCTTCATTAAAAA CAACAATAAAGA ACT TCTTAACTGTTG TTGAAGGTAAAAACG TERM 4590 3199522 - 3199506 - g 81 -7.3 -4.56133 | overlap 3199500 GTTGAAGAAGCAAAA GCTGCTT ACA AAACAGC TGCTAGAGCTTTAGA rpsT 3199362 - 3199628 + | 30S ribosomal protein S20 TERM 4591 3199669 - 3199622 - T 100 -19.7 -3.82499 | gap 1, opp_overlap 3199631 3199638, overlap 3199614 3199631 3199635 3199638 ATTAAATGCATTAAA CGCTTAAAATAAATAA-CCCGT ATTTA ACGGGTTTATTTATTTTAAGCG CATATAGAATTTATT TERM 4592 3199631 - 3199660 + T 73 -7.4 -4.09243 | gap 1, opp_overlap 3199622 3199631 3199635 3199638, overlap 3199638 ATTAAACGCTTAAAA TAAATAA-CCCGT ATTTA ACGGGTTTATTTA TTTTAAGCGCATATA TERM 4593 3199660 - 3199631 - T 73 -7.4 -4.17491 | gap 1, opp_overlap 3199631 3199638, overlap 3199622 3199635 3199638 ATTAAACGCTTAAAA TAAATAA-CCCGT ATTTA ACGGGTTTATTTA TTTTAAGCGCATATA TERM 4594 3199655 - 3199635 - T 71 -5.4 -4.66535 | opp_overlap 3199631 3199638, overlap 3199631 3199622 3199638 AACGCTTAAAATAAA TAACCCGT ATTTA ACGGGTTT ATTTATTTTAAGCGC TERM 4595 3199638 - 3199652 + T 81 -7.1 -4.8743 | opp_overlap 3199638 3199635 3199631 3199622, overlap 3199631 GCTTAAAATAAATAA CCCGT ATTTA ACGGG TTTATTTATTTTAAG TERM 4596 3199652 - 3199638 - T 77 -7.1 -4.43397 | opp_overlap 3199631 3199638, overlap 3199635 3199631 3199622 GCTTAAAATAAATAA CCCGT ATTTA ACGGG TTTATTTATTTTAAG holA 3200694 - 3199663 - | DNA polymerase III subunit delta TERM 4597 3199695 - 3199724 + g 95 -7.3 -5.89659 | TTATTATTAATAATT CTACTTCTGTT TGCGTATT AACGGAAGTAG TTTTTATTTTTTTAT TERM 4598 3200262 - 3200283 + g 85 -2.3 -6.14618 | TTTTATCAATAGTAA TTATACAGG CTTT CTTGTCTAA TTTTTTTATTTTATA TERM 4599 3200379 - 3200394 + g 77 -4.8 -5.25805 | TTTTTATATAATTCT CTATAT CTTT ATATAG TTTTTTAGCTTTATT CLI_3022 3202510 - 3200723 - | ComEC/Rec2 family protein TERM 4600 3201763 - 3201740 - G 77 -9.8 -2.912 | opp_overlap 3201739 3201740, overlap 3201733 3201752 AGATAAACTATCATA CTTTCTAAAA ACCT TTTTAGAAAG CTTTAATATTATAAT TERM 4601 3201740 - 3201763 + g 77 -9.8 -2.98173 | opp_overlap 3201740 3201733 3201752, overlap 3201739 AGATAAACTATCATA CTTTCTAAAA ACCT TTTTAGAAAG CTTTAATATTATAAT TERM 4602 3202359 - 3202349 - G 81 -2.6 -5.80951 | AGCCAAAATAAAAAA TAAT AAA ATTA TAATAAAATTTTTGC TERM 4603 3202426 - 3202407 - G 100 -8.6 -5.22794 | ATAATTATTAAAAAA GATGCAGT AAGC ACTGCACC TAATAATATATTATT CLI_3023 3202752 - 3202522 - | hypothetical protein CLI_3024 3205451 - 3202857 - | putative cation transporting ATPase TERM 4604 3203433 - 3203451 + g 71 -9 -2.88212 | AATATTTTTTGAAGC TTGTAGAA TCT TTCTACAA TCTACTATACTCATT TERM 4605 3205742 - 3205791 + r 73 -6.7 -4.24984 | opp_overlap 3205745, overlap 3205745 TTCTCTAAAATAATA AAACCTATAAGTTAGTATTATAA TTAA TTCCATTACTAACTTATAGGTTA TTTATACTTTTATAT TERM 4606 3205788 - 3205745 - R 100 -10.6 -5.093 | opp_overlap 3205745 3205742 TCTAAAATAATAAAA CCTATAAGTTAGTATTATAA TTAA TTCCATTACTAACTTATAGG TTATTTATACTTTTA TERM 4607 3205745 - 3205788 + r 80 -8.4 -4.2092 | opp_overlap 3205745, overlap 3205742 TCTAAAATAATAAAA CCTATAAGTTAGTATTATAA TTAA TTCCATTACTAACTTATAGG TTATTTATACTTTTA CLI_3025 3206888 - 3205959 - | hypothetical protein TERM 4608 3206687 - 3206704 + g 90 -7.7 -5.08824 | GCGCTAAAAAAGATT CTCCAGC TATT GTTGGAG TTTTTTCAATGAAAG CLI_3026 3206941 - 3207531 + | hypothetical protein TERM 4609 3208177 - 3208157 - T 77 -3.3 -5.68039 | AAATTTATAAAAAAA GAACTTG GATAAAT CAAGCTC TTAAACTCACCTACA selB 3210880 - 3208973 - | selenocysteine-specific translation elongation factor TERM 4610 3210231 - 3210259 + g 88 -9 -4.37092 | TTTGTAACAACCTTT GAAGGATAAATC TGAAC GGTTTGTCCTTC TTTTATAGAACCACT selA 3212287 - 3210899 - | selenocysteine synthase selD 3213433 - 3212354 - | selenide, water dikinase, selenocysteine-containing TERM 4611 3213238 - 3213252 + g 70 -5.7 -4.24745 | opp_overlap 3213235 TTATTTTATATACTG CTGCA TCATC TGCAG TTTCTATTCCTACTA CLI_3032 3214147 - 3213539 - | putative comE operon protein 1 TERM 4612 3214119 - 3214108 - G 78 -3 -5.50723 | CTACTAAAATAAAAA CTAT TATT ATAG ATCCTATTATTTTCT CLI_3033 3214336 - 3215583 + | D-alanyl-D-alanine carboxypeptidase family protein TERM 4613 3215584 - 3215637 + T 72 -4.1 -5.31877 | opp_overlap 3215572 3215575 3215586 3215591, overlap 3215586 3215591 AAATATTATTTTTAA TACAAAAGCTATGAAATATAGATTT AATA ACATCTTAATTTCATAGCTTTTATC TTTTTTATGGTAACT TERM 4614 3215635 - 3215586 - T 74 -8.9 -3.0497 | opp_overlap 3215584 3215586 3215591, overlap 3215591 ATATTATTTTTAATA CAAAAGCTATGAAATATAGATTT AATA ACATCTTAATTTCATAGCTTTTA TCTTTTTTATGGTAA TERM 4615 3215586 - 3215635 + T 73 -6.7 -4.29153 | opp_overlap 3215586 3215591, overlap 3215584 3215591 ATATTATTTTTAATA CAAAAGCTATGAAATATAGATTT AATA ACATCTTAATTTCATAGCTTTTA TCTTTTTTATGGTAA TERM 4616 3215630 - 3215591 - T 77 -6.6 -4.66938 | opp_overlap 3215591 3215586 3215584, overlap 3215586 ATTTTTAATACAAAA GCTATGAAATATAGATTT AATA ACATCTTAATTTCATAGC TTTTATCTTTTTTAT TERM 4617 3215591 - 3215630 + T 80 -6.6 -5.08086 | opp_overlap 3215586 3215591, overlap 3215586 3215584 ATTTTTAATACAAAA GCTATGAAATATAGATTT AATA ACATCTTAATTTCATAGC TTTTATCTTTTTTAT CLI_3034 3216593 - 3215691 - | RluA family pseudouridine synthase TERM 4618 3216914 - 3216882 - R 100 -11.6 -5.08011 | gap 1, opp_overlap 3216882 3216883 3216888, overlap 3216888 AAAATTCCTAAAAAA CA-AAAATGAAGGGA AAAA TCCCTTCATTTTATG TATGCTATATCATAG TERM 4619 3216882 - 3216914 + r 88 -11.6 -2.89971 | gap 1, opp_overlap 3216882 3216888, overlap 3216883 3216888 AAAATTCCTAAAAAA CA-AAAATGAAGGGA AAAA TCCCTTCATTTTATG TATGCTATATCATAG TERM 4620 3216883 - 3216912 + r 87 -10.9 -2.99813 | opp_overlap 3216882 3216888, overlap 3216882 3216888 AAATTCCTAAAAAAC AAAAATGAAGGGA AAAA TCCCTTCATTTTA TGTATGCTATATCAT TERM 4621 3216888 - 3216907 + r 100 -10.8 -4.63586 | opp_overlap 3216882 3216888, overlap 3216883 3216882 CCTAAAAAACAAAAA TGAAGGGA AAAA TCCCTTCA TTTTATGTATGCTAT TERM 4622 3216907 - 3216888 - R 100 -10.8 -5.75538 | opp_overlap 3216888 3216883 3216882, overlap 3216882 CCTAAAAAACAAAAA TGAAGGGA AAAA TCCCTTCA TTTTATGTATGCTAT CLI_3035 3217299 - 3216919 - | putative endoribonuclease L-PSP CLI_3036 3218589 - 3217315 - | putative cell envelope-related function transcriptional attenuator CLI_3037 3219169 - 3218600 - | HDIG domain-containing protein TERM 4623 3219229 - 3219208 - R 70 -6.1 -4.24534 | opp_overlap 3219208, overlap 3219202 3219200 3219196 TAATTAACACATAAA TTAAATTTA TGCA TAAATTTAA TTATAATTTAATATC nadD 3219857 - 3219252 - | nicotinic acid mononucleotide adenylyltransferase TERM 4624 3219396 - 3219416 + g 93 -5.6 -6.07374 | AAATAATATTTCTTT TCTATATT TTAAC AATATAGA TTTTTTCTTTTTTAT CLI_3039 3220393 - 3220100 - | putative RNA-binding protein obg 3221694 - 3220420 - | GTPase ObgE TERM 4625 3221648 - 3221633 - G 77 -7.6 -4.07568 | opp_overlap 3221632 TTTTCTCTTCTAAAA GAGATG GATC CATCTC CTCCCTTTCCTGATT TERM 4626 3222043 - 3222071 + r 93 -13.3 -2.79289 | opp_overlap 3222048, overlap 3222048 TTTAATTGAATCCTA AAAAAGCACCCTT ATA AAGGGTGCTTTTA ATTATTCAGCTACTA TERM 4627 3222066 - 3222048 - R 100 -13.2 -5.09426 | opp_overlap 3222043 3222048 TTGAATCCTAAAAAA GCACCCTT ATA AAGGGTGC TTTTAATTATTCAGC TERM 4628 3222048 - 3222066 + r 100 -13.2 -4.56133 | opp_overlap 3222048, overlap 3222043 TTGAATCCTAAAAAA GCACCCTT ATA AAGGGTGC TTTTAATTATTCAGC rpmA 3222375 - 3222073 - | 50S ribosomal protein L27 CLI_3042 3222704 - 3222378 - | hypothetical protein rplU 3223021 - 3222707 - | 50S ribosomal protein L21 CLI_3044 3224584 - 3223145 - | ribonuclease TERM 4629 3223818 - 3223828 + g 70 -4 -4.9792 | opp_overlap 3223818, overlap 3223809 TTTTTATTTCTAAGA GAAA GTA TTTC TTTTTCTATAGCATA TERM 4630 3224463 - 3224489 + g 74 -7.4 -3.88971 | opp_overlap 3224467, overlap 3224467 3224481 TTAACCATACCTACG TAAATCTCTCCA ACC TGAGGAGATTTA TTATCTTCTTCTATA TERM 4631 3224699 - 3224751 + r 100 -13 -3.92869 | gap 1, opp_overlap 3224699 3224700 3224702, overlap 3224700 3224703 TACGCACCTGGATAA C-GATTTCTAAGCTTTAGAGGGAGT AAAA ATTCCCTCTGAAGCTAAGAACTCTG TTTATACATACATAG TERM 4632 3224750 - 3224699 - R 77 -8.8 -3.31461 | opp_overlap 3224699 3224700 3224703, overlap 3224700 3224702 TACGCACCTGGATAA CGATTTCTAAGCTTTAGAGGGAGT AAAA ATTCCCTCTGAAGCTAAGAACTCT GTTTATACATACATA TERM 4633 3224749 - 3224700 - R 88 -12.3 -2.58663 | opp_overlap 3224699 3224700 3224703, overlap 3224699 3224702 ACGCACCTGGATAAC GATTTCTAAGCTTTAGAGGGAGT AAAA ATTCCCTCTGAAGCTAAGAACTC TGTTTATACATACAT TERM 4634 3224700 - 3224749 + r 100 -16.7 -3.55378 | opp_overlap 3224700 3224699 3224702, overlap 3224699 3224703 ACGCACCTGGATAAC GATTTCTAAGCTTTAGAGGGAGT AAAA ATTCCCTCTGAAGCTAAGAACTC TGTTTATACATACAT TERM 4635 3224747 - 3224702 - R 73 -9.1 -2.83271 | opp_overlap 3224700 3224699 3224703, overlap 3224700 3224699 GCACCTGGATAACGA TTTCTAAGCTTTAGAGGGAGT AAAA ATTCCCTCTGAAGCTAAGAAC TCTGTTTATACATAC TERM 4636 3224703 - 3224746 + r 100 -17 -2.60511 | opp_overlap 3224702 3224700 3224699, overlap 3224700 3224699 CACCTGGATAACGAT TTCTAAGCTTTAGAGGGAGT AAAA ATTCCCTCTGAAGCTAAGAA CTCTGTTTATACATA CLI_3045 3225460 - 3224753 - | hypothetical protein TERM 4637 3224954 - 3224969 + g 71 -4.8 -4.77438 | TAATAAATTACTTTC TATAGA ATAA TCTATA TTTTTAATCATAGGT CLI_3046 3227294 - 3225444 - | radical SAM domain-containing protein CLI_3047 3228258 - 3227407 - | putative metalloprotease CLI_3048 3229098 - 3228313 - | M24/M37 family peptidase TERM 4638 3229189 - 3229242 + r 73 -8.8 -2.76171 | gap 2, opp_overlap 3229181 3229189, overlap 3229188 CTATAAATAACAAAA TCATATATTGTTAAAAATCCTAAGTT TTTA AAC--AGAATTTTTAACAATATATGA CTTCTAATTCTTAAG TERM 4639 3229242 - 3229189 - R 100 -11.6 -5.05116 | opp_overlap 3229189 3229188, overlap 3229181 CTATAAATAACAAAA TCATATATTGTTAAAAATCCTA AGTTTTTAAA CAGAATTTTTAACAATATATGA CTTCTAATTCTTAAG TERM 4640 3229372 - 3229406 + r 73 -6.7 -4.20797 | gap 1, opp_overlap 3229372 ATTATAAAGAAAAAA CCTATTTAGTACTAAT TTTT ATTTG-ACTAAATAGG TTTATATACTTTTAA TERM 4641 3229406 - 3229372 - R 90 -6.7 -5.73978 | gap 1, opp_overlap 3229372 ATTATAAAGAAAAAA CCTATTTAGTACTAAT TTTT ATTTG-ACTAAATAGG TTTATATACTTTTAA rodA-2 3230536 - 3229418 - | rod shape-determining protein RodA TERM 4642 3230610 - 3230587 - R 100 -9 -5.05601 | TATCACACACAAAAA GCTATGTACA AATT TATACATAGC CTAAAAAATTTCTTA TERM 4643 3230612 - 3230633 + r 80 -6.1 -5.26158 | AATTTATACATAGCC TAAAAAATT TCTT AATTTTTTA TTTATTTTTTCTTTA minE 3230898 - 3230635 - | cell division topological specificity factor MinE TERM 4644 3230950 - 3230930 - R 71 -7.1 -4.0098 | CTTTAACCCAAATAA TTTTTTAAA TGA TTTAAAAAA GCCCTGTTCCTTACT minD 3231709 - 3230912 - | septum site-determining protein MinD minC 3232356 - 3231727 - | septum formation inhibitor TERM 4645 3232472 - 3232518 + r 72 -8.3 -3.28969 | opp_overlap 3232474, overlap 3232471 3232474 3232515 TATTTTCCATTTTAA AATATCCACACTATCTATTAT ATAAA ATAATTTATAGTGTGGATATA GTTTATATTTATTTA TERM 4646 3232474 - 3232516 + r 90 -10.9 -3.17739 | opp_overlap 3232474, overlap 3232472 3232471 3232515 TTTTCCATTTTAAAA TATCCACACTATCTATTAT ATAAA ATAATTTATAGTGTGGATA TAGTTTATATTTATT TERM 4647 3232516 - 3232474 - R 100 -10.9 -4.13767 | opp_overlap 3232474 3232472 3232471 3232515 TTTTCCATTTTAAAA TATCCACACTATCTATTAT ATAAA ATAATTTATAGTGTGGATA TAGTTTATATTTATT CLI_3053 3235305 - 3232531 - | penicillin-binding protein TERM 4648 3234147 - 3234185 + g 100 -12.6 -3.0634 | opp_overlap 3234154, overlap 3234149 3234154 TTTCTCCTGTATTTA CATCTAATGCTACTGCAG CAC CTCTTGTAGCATTAGATG TATTAACATCGCCTT TERM 4649 3234149 - 3234183 + g 76 -9.4 -3.08813 | opp_overlap 3234154, overlap 3234147 3234154 TCTCCTGTATTTACA TCTAATGCTACTGCAG CAC CTCTTGTAGCATTAGA TGTATTAACATCGCC TERM 4650 3234761 - 3234781 + g 85 -11.3 -2.85987 | overlap 3234758 TTAAAGGTTTCTTCT GGAGTTATT TTT AATAACTCC TCATCTATTTTAGCT TERM 4651 3234830 - 3234849 + g 78 -3 -5.64274 | TCTTCTTTTTCTTTT TTATTTTT ACCT GAAAATAA TTTTTTTGTAACTAC mreD 3235816 - 3235325 - | rod shape-determining protein MreD mreC 3236672 - 3235827 - | rod shape-determining protein MreC TERM 4652 3236057 - 3236079 + g 71 -7.8 -3.45527 | opp_overlap 3236055 3236056, overlap 3236055 3236059 GTAGAAAATATAATT TTGCCAAAAT ATT ATTTTGGCTA TCTTTAAATCCTTTT TERM 4653 3236059 - 3236077 + g 83 -10.4 -3.28524 | opp_overlap 3236055 3236056, overlap 3236055 3236057 AGAAAATATAATTTT GCCAAAAT ATT ATTTTGGC TATCTTTAAATCCTT TERM 4654 3236624 - 3236651 + g 80 -6.4 -4.85782 | gap 1, opp_overlap 3236624 ATACTAAAAAGGTAA CTGACAGT-ACAA TTA TAGTTACTGTCAG TTTATTTTTAAAGAA CLI_3056 3237689 - 3236679 - | rod shape-determining protein MreB TERM 4655 3237282 - 3237301 + g 74 -9.4 -2.82449 | overlap 3237265 3237281 GATAGCTGCTGCCAT TGGTTCTT CCAT AAGAACCA CTTCTCTTGCTCCAG CLI_3057 3238404 - 3237718 - | DNA repair protein RadC maf 3239003 - 3238419 - | Maf-like protein CLI_3059 3239276 - 3239019 - | hypothetical protein TERM 4656 3239388 - 3239365 - R 74 -4.7 -5.26875 | gap 1, opp_overlap 3239366 3239368, overlap 3239368 TTTTTAAGCAAAAAA TAAGCATCTG AAAAA CAGATGC-TA TTTATTATTCACTTC TERM 4657 3239366 - 3239388 + r 72 -6.3 -4.4846 | opp_overlap 3239365 3239368, overlap 3239368 TTTTAAGCAAAAAAT AAGCATCTG AAAAA CAGATGCTA TTTATTATTCACTTC TERM 4658 3239368 - 3239386 + r 79 -8.9 -3.83566 | opp_overlap 3239365 3239368, overlap 3239366 TTAAGCAAAAAATAA GCATCTG AAAAA CAGATGC TATTTATTATTCACT TERM 4659 3239386 - 3239368 - R 89 -8.9 -4.72473 | opp_overlap 3239368 3239366, overlap 3239365 TTAAGCAAAAAATAA GCATCTG AAAAA CAGATGC TATTTATTATTCACT CLI_3060 3240087 - 3239386 - | hypothetical protein TERM 4660 3240258 - 3240213 - R 95 -7.3 -5.96894 | gap 1, overlap 3240222 ACTTAAATAAAAAAA GCTATCAAATTTAAGATATTAT AAT ATAATACCCTAAACTT-ACAGC TTTCTAATTTAAAAA TERM 4661 3240250 - 3240222 - R 75 -7.7 -3.86795 | overlap 3240213 AAAAAAGCTATCAAA TTTAAGATATTAT AAT ATAATACCCTAAA CTTACAGCTTTCTAA CLI_3061 3240852 - 3240313 - | hypothetical protein TERM 4662 3240376 - 3240387 + g 71 -3 -5.23943 | TATTTCATTACTATT TATG TTAT CATA TTTATTTTTTTCGTA TERM 4663 3240607 - 3240578 - G 74 -3.1 -5.42259 | gap 1, opp_overlap 3240585, overlap 3240580 3240585 CGATCTTTAAAAAAA TATAGAATCCAAAT TTC ATTTGGATTTT-TA AATTCTGCTCTTCCC TERM 4664 3240585 - 3240601 + g 87 -8.1 -4.78752 | opp_overlap 3240580 3240578 3240585 TAAAAAAATATAGAA TCCAAAT TTC ATTTGGA TTTTTAAATTCTGCT TERM 4665 3240601 - 3240585 - G 79 -8.1 -3.97983 | opp_overlap 3240585, overlap 3240580 3240578 TAAAAAAATATAGAA TCCAAAT TTC ATTTGGA TTTTTAAATTCTGCT TERM 4666 3240984 - 3240937 - H 95 -10.3 -4.20783 | opp_overlap 3240944 3240946 3240950 ATTTCACTTAATAAA TTTAGCATATAAAGATCCATT AAAATA AATGGACCTTTATATATTAAA TCATACCTCACATAC TERM 4667 3240944 - 3240977 + H 71 -8.4 -3.10975 | opp_overlap 3240937, overlap 3240946 3240950 TTAATAAATTTAGCA TATAAAGATCCATT AAAATA AATGGACCTTTATA TATTAAATCATACCT TERM 4668 3241457 - 3241472 + G 72 -7.6 -3.60094 | opp_overlap 3241454 TAAAACAAATATCTT TTCACC TAAA GGTGAA TTGTGCTTATGTGTA TERM 4669 3241657 - 3241641 - g 73 -3.8 -5.24531 | opp_overlap 3241641 ACTCTTGAGAAAAAA TTATGT TTATT ACATAA CTTTTCTAAAGCGTT CLI_3062 3241278 - 3241832 + | hypothetical protein TERM 4670 3241851 - 3241893 + T 87 -11 -3.09015 | opp_overlap 3241836 3241861, overlap 3241861 TATTCACCCTGTAGT AAATAAAAAACTTCATCT GCTAAAA AGATGAAGTTTTTTATTA TTCCATAGCTATCAA TERM 4671 3241861 - 3241883 + T 90 -6.4 -5.64873 | opp_overlap 3241861, overlap 3241851 GTAGTAAATAAAAAA CTTCATCT GCTAAAA AGATGAAG TTTTTTATTATTCCA TERM 4672 3241883 - 3241861 - T 90 -6.4 -5.68438 | opp_overlap 3241861 3241851 GTAGTAAATAAAAAA CTTCATCT GCTAAAA AGATGAAG TTTTTTATTATTCCA pheB 3242328 - 3241891 - | hypothetical protein CLI_3064 3242519 - 3242385 - | hypothetical protein TERM 4673 3242476 - 3242495 + g 88 -9.4 -4.18019 | opp_overlap 3242476 TATAATATAAAAAAA GAGAAGTA TAAA TACTTCTC TTTATATCTAATTAT TERM 4674 3242495 - 3242476 - G 100 -9.4 -5.84432 | opp_overlap 3242476 TATAATATAAAAAAA GAGAAGTA TAAA TACTTCTC TTTATATCTAATTAT TERM 4675 3243100 - 3243082 - R 72 -7.6 -3.57627 | opp_overlap 3243081, overlap 3243081 CTTTTATATAAAAAT CTATATAT ATT ATATATAG CCTTTACCTTTTTTA CLI_3066 3243608 - 3243063 - | transglycosylase SLT domain-containing protein coaE 3244264 - 3243626 - | dephospho-CoA kinase polA-2 3246903 - 3244276 - | DNA polymerase I aroC 3248045 - 3246921 - | chorismate synthase CLI_3070 3249223 - 3248444 - | endolysin TERM 4676 3249361 - 3249381 + r 79 -8.3 -4.14598 | opp_overlap 3249361 TTTTCATAATAAAAA GAGCAGG TTTTACT CCTGCTC TTTACTTTCCTTAAC TERM 4677 3249381 - 3249361 - R 95 -8.3 -5.18726 | opp_overlap 3249361 TTTTCATAATAAAAA GAGCAGG TTTTACT CCTGCTC TTTACTTTCCTTAAC CLI_3071 3249564 - 3249370 - | hypothetical protein CLI_3072 3249837 - 3249583 - | hypothetical protein TERM 4678 3249636 - 3249619 - G 90 -6.3 -5.63504 | AATTGCATAAAAAAA GAAGCTT ACTA AAGCTCC TACTGATAATCCTAT TERM 4679 3249944 - 3249913 - R 90 -6.8 -5.69473 | gap 1, opp_overlap 3249913 TATATTACAAAAAAA TTAGAGCAATAGAAA TAA TATCTAT-GCTCTAA TTTTTTGCAATAAAA TERM 4680 3249913 - 3249944 + r 80 -6.8 -5.0538 | gap 1, opp_overlap 3249913 TATATTACAAAAAAA TTAGAGCAATAGAAA TAA TATCTAT-GCTCTAA TTTTTTGCAATAAAA TERM 4681 3249976 - 3249963 - R 79 -3.8 -5.7946 | TTTGCAATAAAAAAA GACC TATTAT GGTC ATCTAATTTACCTTT CLI_3073 3250913 - 3249990 - | hypothetical protein CLI_3074 3252266 - 3250983 - | cell adhesion domain-containing protein TERM 4682 3251278 - 3251304 + g 74 -7.6 -3.84389 | opp_overlap 3251276 3251281, overlap 3251281 ATCCCTAAATCTATA TAATTATTATTT ATT GAATAATAATTA TTATCTTGTTGAATC CLI_3075 3253023 - 3252280 - | cell adhesion domain-containing protein CLI_3076 3253727 - 3253026 - | hypothetical protein TERM 4683 3253807 - 3253783 - R 80 -6.5 -4.98531 | TTTGCAAAGTAAAAA CTGAGTGTC CAAGAAT AACACTCAG CTAATAATTAATTTT CLI_3077 3254893 - 3253808 - | hypothetical protein CLI_3078 3255903 - 3254905 - | hypothetical protein TERM 4684 3255870 - 3255845 - G 89 -9.1 -4.29953 | overlap 3255842 AAATCAGCAAAAGAA GAAGCCAAGAA AAAA TTCTCAGCTTC TAATAATCCATTTTT CLI_3079 3256169 - 3255915 - | hypothetical protein CLI_3080 3258070 - 3256175 - | hypothetical protein TERM 4685 3257713 - 3257727 + g 75 -4.3 -5.24799 | TATTTTTTCTTATAT CAAGT TCCTT ACTTG TTTTTCTATTTATAC CLI_3081 3259338 - 3258085 - | hypothetical protein CLI_3082 3260329 - 3259361 - | hypothetical protein TERM 4686 3260102 - 3260115 + g 70 -3.9 -5.07275 | overlap 3260094 TATACCTTTCACTTT TTGAA TACC TTCAA TTTTTCTGTATATAA CLI_3083 3261680 - 3260331 - | hypothetical protein TERM 4687 3261065 - 3261084 + g 76 -3.6 -5.48825 | TATATTCACTTTCTC CTATAGCT AAAA ATCTATAG TTTTTTTCACTAGTG TERM 4688 3261522 - 3261532 + g 70 -4 -4.85894 | TAAATCATTATAATC TACA CCT TGTA TTTTATCTTTAATTT CLI_3084 3262036 - 3261695 - | hypothetical protein CLI_3085 3263134 - 3262049 - | hypothetical protein CLI_3086 3263555 - 3263121 - | hypothetical protein CLI_3087 3264971 - 3263568 - | phage protein TERM 4689 3264599 - 3264617 + g 74 -2.4 -5.60993 | TAGATGCTTGTAACT GTGCAAAA GAA TCTTGTAC TTTTTTTATGGAAGC TERM 4690 3264701 - 3264726 + g 75 -5.6 -4.73388 | gap 1 CTTTTTTTGGATTCT TACTCTTTGCT TCTTC AGCAA-GAGTA TTTTTCATACCAGTT CLI_3088 3265214 - 3265047 - | hypothetical protein CLI_3089 3265665 - 3265249 - | hypothetical protein TERM 4691 3265562 - 3265542 - G 76 -9.9 -2.83403 | overlap 3265541 3265548 CTTTTCTTACCAAAT TTAAAAGAG ATA CTCTTTTAA CTCTAGCATTAAAAG CLI_3090 3266567 - 3265680 - | hypothetical protein TERM 4692 3265994 - 3266020 + g 77 -9.6 -2.97386 | opp_overlap 3266014, overlap 3266014 CTACTTTTCCACCTT CTACTCCTAT ATCTTCA ATAGGAGTAG TCTCTCCTGGCTTTT TERM 4693 3266401 - 3266413 + g 73 -3.5 -5.3104 | ATATCATCTGTTTCA TTTAT TCC ATAAA TTTTGTTTTTAATCC CLI_3091 3266991 - 3266572 - | hypothetical protein TERM 4694 3266731 - 3266719 - G 76 -6.3 -4.52857 | opp_overlap 3266719 3266717 ATTCTCTACATAAAA TTCCA TAG TGGAA TATTGATCCATAGGG CLI_3092 3267344 - 3266997 - | hypothetical protein TERM 4695 3267196 - 3267213 + g 93 -5.5 -5.79526 | ATATCCTTACCTGAT TGCTCCT TCCA AGGTGCA TTTTTTTTAGCATCT CLI_3093 3267714 - 3267349 - | hypothetical protein TERM 4696 3267622 - 3267632 + g 72 -2.6 -5.4659 | AAAAGCATTTTTACC TATT CTT AATA TTTTTATTTCTCTTA CLI_3094 3267998 - 3267714 - | hypothetical protein TERM 4697 3267746 - 3267759 + g 70 -5.3 -4.52347 | TTTCCATAGAAGTTT GATTC TTTA GAATC TTTTGCTCTTCTTTG CLI_3095 3269023 - 3268502 - | hypothetical protein CLI_3096 3269457 - 3269137 - | hypothetical protein CLI_3097 3270314 - 3269514 - | hypothetical protein CLI_3098 3271209 - 3270304 - | putative phage replisome organizer CLI_3099 3271515 - 3271303 - | putative DNA-binding protein CLI_3100 3271786 - 3271577 - | DNA-binding protein CLI_3101 3271978 - 3272388 + | DNA-binding protein CLI_3102 3272690 - 3272839 + | hypothetical protein TERM 4698 3273385 - 3273361 - f 100 -8.7 -5.79595 | opp_overlap 3273361 TTTTAAAATAAAAAA GACTTTGGA AAATTAA TCCAAAGTC TTCAATGTTATATCT TERM 4699 3273361 - 3273385 + F 75 -8.7 -3.23585 | opp_overlap 3273361 TTTTAAAATAAAAAA GACTTTGGA AAATTAA TCCAAAGTC TTCAATGTTATATCT TERM 4700 3273449 - 3273463 + F 72 -8.6 -3.12847 | CGAAGTTACCCTCGA CGGATT TTG AATCCG TTGCGTCTGCCAATT TERM 4701 3275049 - 3275002 - g 74 -5.2 -4.88687 | opp_overlap 3275009, overlap 3275006 TTAAAGAAAAAATAA TAAATAATTTAAAGATAAAAAC TAAT GTATTTAGCTTTAAATTATTCC AAACATTGTTTACTT TERM 4702 3275045 - 3275006 - g 90 -8.2 -4.86216 | opp_overlap 3275009, overlap 3275002 AGAAAAAATAATAAA TAATTTAAAGATAAAAAC TAAT GTATTTAGCTTTAAATTA TTCCAAACATTGTTT CLI_3105 3273921 - 3275408 + | putative alginate O-acetyltransferase AlgI TERM 4703 3276519 - 3276503 - g 72 -5.3 -4.78661 | ACTTAAAAATGAAAA TTATATT GTG AATATAA GCTGTAATAATTATA CLI_3106 3275421 - 3276872 + | hypothetical protein TERM 4704 3276990 - 3276957 - T 100 -13.5 -4.39571 | opp_overlap 3276952 3276951 3276959 TCTATAAATTCAAAA GAGATTAGATACATA TAAA TATATATCTAATCTC TTAAGCTGTTTTAAC TERM 4705 3276959 - 3276988 + T 72 -8.1 -3.12289 | opp_overlap 3276957, overlap 3276952 3276951 TATAAATTCAAAAGA GATTAGATACATA TAAA TATATATCTAATC TCTTAAGCTGTTTTA CLI_3107 3277246 - 3277043 - | small, acid-soluble spore protein TERM 4706 3277264 - 3277316 + r 73 -3 -5.63374 | gap 1, opp_overlap 3277274, overlap 3277267 3277272 3277273 3277274 3277276 TAATCTTCCTCCCTT TATCTCTAA-ATATATTACAAGCTT AATT AAGCTTGTAATATAAGTTTGTGTTA TTTTTTTGATATTAC TERM 4707 3277267 - 3277313 + r 70 -4.7 -4.86226 | gap 1, opp_overlap 3277274, overlap 3277264 3277272 3277273 3277274 3277276 TCTTCCTCCCTTTAT CTCTAA-ATATATTACAAGCTT AATT AAGCTTGTAATATAAGTTTGTG TTATTTTTTTGATAT TERM 4708 3277272 - 3277307 + r 81 -7.8 -4.50902 | opp_overlap 3277274, overlap 3277267 3277264 3277273 3277274 3277276 CTCCCTTTATCTCTA AATATATTACAAGCTT AATT AAGCTTGTAATATAAG TTTGTGTTATTTTTT TERM 4709 3277273 - 3277306 + r 90 -11.3 -3.26881 | opp_overlap 3277274, overlap 3277272 3277267 3277264 3277274 3277276 TCCCTTTATCTCTAA ATATATTACAAGCTT AATT AAGCTTGTAATATAA GTTTGTGTTATTTTT TERM 4710 3277274 - 3277305 + r 100 -14.8 -2.53688 | opp_overlap 3277274, overlap 3277273 3277272 3277267 3277264 3277276 CCCTTTATCTCTAAA TATATTACAAGCTT AATT AAGCTTGTAATATA AGTTTGTGTTATTTT TERM 4711 3277305 - 3277274 - R 100 -14.8 -3.57144 | opp_overlap 3277274 3277273 3277272 3277267 3277264 3277276 CCCTTTATCTCTAAA TATATTACAAGCTT AATT AAGCTTGTAATATA AGTTTGTGTTATTTT TERM 4712 3277276 - 3277303 + r 91 -13 -2.77901 | opp_overlap 3277274, overlap 3277274 3277273 3277272 3277267 3277264 CTTTATCTCTAAATA TATTACAAGCTT AATT AAGCTTGTAATA TAAGTTTGTGTTATT CLI_3108 3277571 - 3277431 - | hypothetical protein CLI_3109 3277930 - 3277811 - | hypothetical protein CLI_3110 3278277 - 3277987 - | hypothetical protein TERM 4713 3278281 - 3278310 + r 90 -12.3 -2.95448 | overlap 3278283 CATTATTTCCATATT TATCCCCCCATAA AATT TTATGAGGGGATA TCTATAACTATTACT TERM 4714 3278283 - 3278308 + r 85 -10.5 -3.02626 | overlap 3278281 TTATTTCCATATTTA TCCCCCCATAA AATT TTATGAGGGGA TATCTATAACTATTA CLI_3111 3278547 - 3278419 - | hypothetical protein CLI_3112 3278719 - 3279147 + | sigma-E factor regulator TERM 4715 3279141 - 3279185 + T 100 -13.9 -3.90582 | opp_overlap 3279141 3279143 3279145 3279150, overlap 3279137 3279145 3279150 GACACGAATACTTAA TAGATAAAATAAGGAAAGCGC ATC GCACTTTCCTTATTTTATTAA TCTTCTTTTTCTATT TERM 4716 3279184 - 3279141 - T 100 -15.8 -3.21062 | gap 1, opp_overlap 3279141 3279137 3279145 3279150, overlap 3279143 3279145 3279150 GACACGAATACTTAA TAGATAAAATAAGGAAAGCGC ATC GCACTTTCCTTATTTTAT-TA ATCTTCTTTTTCTAT TERM 4717 3279183 - 3279143 - T 100 -16.5 -3.16217 | opp_overlap 3279141 3279137 3279145 3279150, overlap 3279141 3279145 3279150 CACGAATACTTAATA GATAAAATAAGGAAAGCGC ATC GCACTTTCCTTATTTTATT AATCTTCTTTTTCTA TERM 4718 3279145 - 3279181 + T 100 -16.9 -3.56246 | opp_overlap 3279143 3279141 3279145 3279150, overlap 3279141 3279137 3279150 CGAATACTTAATAGA TAAAATAAGGAAAGCGC ATC GCACTTTCCTTATTTTA TTAATCTTCTTTTTC TERM 4719 3279181 - 3279145 - T 100 -19.1 -3.136 | opp_overlap 3279145 3279141 3279137 3279150, overlap 3279143 3279141 3279150 CGAATACTTAATAGA TAAAATAAGGAAAGCGC ATC GCACTTTCCTTATTTTA TTAATCTTCTTTTTC TERM 4720 3279150 - 3279176 + T 100 -12.4 -4.79657 | opp_overlap 3279145 3279143 3279141 3279150, overlap 3279145 3279141 3279137 ACTTAATAGATAAAA TAAGGAAAGCGC ATC GCACTTTCCTTA TTTTATTAATCTTCT TERM 4721 3279176 - 3279150 - T 100 -14.6 -4.68545 | opp_overlap 3279150 3279145 3279141 3279137, overlap 3279145 3279143 3279141 ACTTAATAGATAAAA TAAGGAAAGCGC ATC GCACTTTCCTTA TTTTATTAATCTTCT aspS-2 3280963 - 3279182 - | aspartyl-tRNA synthetase TERM 4722 3280034 - 3280052 + g 73 -9 -3.20126 | overlap 3280049 TTTAAATTCTGAATT TTTAACAG CTT CTGTTAAA TCATTTATTTCCATT hisS 3282251 - 3281004 - | histidyl-tRNA synthetase TERM 4723 3281829 - 3281844 + g 74 -7.6 -3.73042 | TATACTTATAACTTC TGCATC CACA GATGCA TCTTTTGCTCCAAAA CLI_3115 3283700 - 3282270 - | coproporphyrinogen III oxidase TERM 4724 3283163 - 3283145 - G 84 -8.9 -4.32177 | overlap 3283141 CCATTTCATAATAAA GAGCCTT TAAAT AAGGCTC CACTAAGTTCTTACA CLI_3116 3284337 - 3283738 - | metallo-beta-lactamase family protein TERM 4725 3283953 - 3283973 + g 72 -6.7 -4.12901 | CTAAAAAACTCATTC CACCTGGAC TAT GTCCTGGAG TTTCTATAGCTTTTA TERM 4726 3284350 - 3284364 + r 70 -4.4 -4.97666 | CATTAAATACACCTC TTTTAA AAA TTAAAA TTTTTCTACTCTCTT dtd 3284848 - 3284399 - | D-tyrosyl-tRNA(Tyr) deacylase relA 3287062 - 3284891 - | GTP pyrophosphokinase TERM 4727 3287084 - 3287112 + r 82 -4.5 -5.7827 | opp_overlap 3287088, overlap 3287086 3287087 3287088 ATTACTCCTCAAAAT CAAAGGCTGGTTT ATA AAACCAGCCAATA TTTTTTATTTCTATT TERM 4728 3287086 - 3287110 + r 77 -7.1 -4.49311 | opp_overlap 3287088, overlap 3287084 3287087 3287088 TACTCCTCAAAATCA AAGGCTGGTTT ATA AAACCAGCCAA TATTTTTTATTTCTA TERM 4729 3287087 - 3287109 + r 87 -10.6 -3.27147 | opp_overlap 3287088, overlap 3287086 3287084 3287088 ACTCCTCAAAATCAA AGGCTGGTTT ATA AAACCAGCCA ATATTTTTTATTTCT TERM 4730 3287108 - 3287088 - R 100 -14.1 -4.19735 | opp_overlap 3287087 3287086 3287084 3287088 CTCCTCAAAATCAAA GGCTGGTTT ATA AAACCAGCC AATATTTTTTATTTC TERM 4731 3287088 - 3287108 + r 100 -14.1 -2.53848 | opp_overlap 3287088, overlap 3287087 3287086 3287084 CTCCTCAAAATCAAA GGCTGGTTT ATA AAACCAGCC AATATTTTTTATTTC apt 3287704 - 3287186 - | adenine phosphoribosyltransferase TERM 4732 3287454 - 3287464 + g 86 -3.2 -5.84381 | CTAATAGTCTCATAT GGTA ATT TGCC TTTTTTTCTTACTGG CLI_3120 3288691 - 3287813 - | DHH domain-containing protein TERM 4733 3288904 - 3288876 - R 88 -11.9 -2.93252 | opp_overlap 3288881, overlap 3288881 ATGCTTTAATAATTA GAAAATCCAAGCT TAA AGCTTGGATTTTT ATACAAATATACTAA TERM 4734 3288881 - 3288899 + r 100 -11.8 -4.84761 | opp_overlap 3288876 3288881 TTAATAATTAGAAAA TCCAAGCT TAA AGCTTGGA TTTTTATACAAATAT TERM 4735 3288899 - 3288881 - R 100 -11.8 -4.61747 | opp_overlap 3288881, overlap 3288876 TTAATAATTAGAAAA TCCAAGCT TAA AGCTTGGA TTTTTATACAAATAT secF 3289783 - 3288920 - | preprotein translocase subunit SecF secD 3291053 - 3289785 - | preprotein translocase subunit SecD TERM 4736 3291090 - 3291136 + r 77 -4.8 -5.28831 | opp_overlap 3291096, overlap 3291093 AGTTTATTATAAGAA TAAGAACATAATTTATTATG TTTGCTT TATAATAAATTATGTACTAA TTTTCTTTTATTAAT CLI_3123 3292514 - 3291147 - | radical SAM domain-containing protein TERM 4737 3292637 - 3292658 + r 100 -11.7 -4.35874 | opp_overlap 3292637 TTCAGTAAATATAAA GCAGTAACT TTAA AGTTACTGC TTTTAGCTTATATTA TERM 4738 3292658 - 3292637 - R 100 -11.7 -4.36903 | opp_overlap 3292637 TTCAGTAAATATAAA GCAGTAACT TTAA AGTTACTGC TTTTAGCTTATATTA CLI_3124 3292808 - 3292671 - | hypothetical protein CLI_3125 3293266 - 3292898 - | hypothetical protein TERM 4739 3293315 - 3293264 - G 81 -10.5 -3.05463 | gap 1, opp_overlap 3293263 3293261 3293264 3293271, overlap 3293266 3293271 ATTTTTTTTATTCAA CATAAAACACCCCCTC-ATATTTA GTATT TATGTATTAAGGGGGTGTTTTATG ATAATTTATTTATCC TERM 4740 3293264 - 3293315 + g 85 -11.2 -2.52776 | gap 1, opp_overlap 3293264 3293266 3293271, overlap 3293263 3293261 3293271 ATTTTTTTTATTCAA CATAAAACACCCCC-TCATATTTAG TAT TTATGTATTAAGGGGGTGTTTTATG ATAATTTATTTATCC yajC 3293656 - 3293321 - | preprotein translocase subunit YajC TERM 4741 3293701 - 3293723 + r 76 -2.1 -5.95946 | overlap 3293717 TAATTTATTTTACTA CTTTTCA CTTTAATTT TGAAAAG TTTTTTTATTATTAA TERM 4742 3293774 - 3293794 + r 75 -7.1 -4.33851 | opp_overlap 3293774 GATATATTTATATTA TTTTATATT TAA AATATAAAA TTTATTATAGCATTT tgt 3294966 - 3293836 - | queuine tRNA-ribosyltransferase queA 3296047 - 3295022 - | S-adenosylmethionine:tRNA ribosyltransferase-isomerase ruvB 3297109 - 3296081 - | Holliday junction DNA helicase B ruvA 3297722 - 3297129 - | Holliday junction DNA helicase motor protein TERM 4743 3297374 - 3297397 + g 77 -4.6 -5.21709 | GAGCTGTTTTTTTAC CTATACCAGG AGCC CTTGTTATAG TTTTTTCATCTCCCA TERM 4744 3297832 - 3297799 - R 100 -9.9 -5.64006 | gap 1, opp_overlap 3297799 3297801 3297831, overlap 3297801 3297831 ATTCAACTAAAAAAA CATAGCTTGCATGTTA GTG TAA-ATGCAAGCTATA TTTCCAATATTCGTT TERM 4745 3297799 - 3297832 + r 73 -7.7 -3.67918 | gap 1, opp_overlap 3297799 3297801 3297831, overlap 3297801 3297831 ATTCAACTAAAAAAA CATAGCTTGCATGTTA GTG TAA-ATGCAAGCTATA TTTCCAATATTCGTT TERM 4746 3297801 - 3297830 + r 90 -10.3 -3.41302 | gap 1, opp_overlap 3297799 3297801, overlap 3297799 TCAACTAAAAAAACA TAGCTTGCATGTTA GTG TAA-ATGCAAGCTA TATTTCCAATATTCG TERM 4747 3297830 - 3297801 - R 100 -10.3 -4.45473 | gap 1, opp_overlap 3297801 3297799, overlap 3297799 TCAACTAAAAAAACA TAGCTTGCATGTTA GTG TAA-ATGCAAGCTA TATTTCCAATATTCG CLI_3131 3298513 - 3297902 - | hypothetical protein TERM 4748 3298855 - 3298890 + r 87 -10 -3.37245 | gap 1, opp_overlap 3298859 3298862 3298867, overlap 3298857 3298862 3298867 TTATACTCTGTAATC TAA-ATAAGGAAAGTGC ATC GCACTTTCCTTACATTA TTACTCTTCCCATCC TERM 4749 3298857 - 3298887 + r 90 -9.8 -3.82084 | opp_overlap 3298859 3298862 3298867, overlap 3298855 3298862 3298867 ATACTCTGTAATCTA AATAAGGAAAGTGC ATC GCACTTTCCTTACA TTATTACTCTTCCCA TERM 4750 3298885 - 3298859 - R 100 -16.8 -3.75332 | opp_overlap 3298857 3298855 3298862 3298867, overlap 3298862 3298867 ACTCTGTAATCTAAA TAAGGAAAGTGC ATC GCACTTTCCTTA CATTATTACTCTTCC TERM 4751 3298882 - 3298862 - R 100 -14.1 -4.0098 | opp_overlap 3298857 3298855 3298862 3298867, overlap 3298859 3298867 CTGTAATCTAAATAA GGAAAGTGC ATC GCACTTTCC TTACATTATTACTCT TERM 4752 3298862 - 3298882 + r 100 -14.1 -3.30605 | opp_overlap 3298862 3298859 3298867, overlap 3298857 3298855 3298867 CTGTAATCTAAATAA GGAAAGTGC ATC GCACTTTCC TTACATTATTACTCT TERM 4753 3298877 - 3298867 - R 71 -6.8 -4.15366 | opp_overlap 3298867 3298862 3298857 3298855, overlap 3298862 3298859 ATCTAAATAAGGAAA GTGC ATC GCAC TTTCCTTACATTATT CLI_3132 3299631 - 3298891 - | hypothetical protein CLI_3133 3300432 - 3299782 - | hypothetical protein TERM 4754 3300399 - 3300409 + g 75 -4 -5.31275 | TTTCTTCAAATTCAT CTTT TCC AAAG TTTTTTATAGTAAAA CLI_3134 3301110 - 3300448 - | HEAT repeat-containing PBS lyase TERM 4755 3301226 - 3301174 - R 73 -6.4 -4.21945 | gap 1, opp_overlap 3301175 3301176 3301178, overlap 3301176 3301179 ATTAATATATATAAA CAGAGTTCTTGGTTTCAGAGGGAGT TTTT ACTCCCTCTAGAACTTAGAAATC-G TTATCCAGGGACGTA TERM 4756 3301175 - 3301226 + r 75 -8.8 -3.28924 | opp_overlap 3301174 3301176 3301179, overlap 3301176 3301178 TTAATATATATAAAC AGAGTTCTTGGTTTCAGAGGGAGT TTTT ACTCCCTCTAGAACTTAGAAATCG TTATCCAGGGACGTA TERM 4757 3301176 - 3301225 + r 86 -12.3 -2.57211 | opp_overlap 3301176 3301174 3301179, overlap 3301175 3301178 TAATATATATAAACA GAGTTCTTGGTTTCAGAGGGAGT TTTT ACTCCCTCTAGAACTTAGAAATC GTTATCCAGGGACGT TERM 4758 3301225 - 3301176 - R 90 -10.1 -3.6979 | opp_overlap 3301175 3301176 3301178, overlap 3301174 3301179 TAATATATATAAACA GAGTTCTTGGTTTCAGAGGGAGT TTTT ACTCCCTCTAGAACTTAGAAATC GTTATCCAGGGACGT TERM 4759 3301178 - 3301223 + r 73 -9.1 -2.82623 | opp_overlap 3301176 3301174 3301179, overlap 3301176 3301175 ATATATATAAACAGA GTTCTTGGTTTCAGAGGGAGT TTTT ACTCCCTCTAGAACTTAGAAA TCGTTATCCAGGGAC TERM 4760 3301222 - 3301179 - R 81 -10.4 -2.63566 | opp_overlap 3301178 3301176 3301175, overlap 3301176 3301174 TATATATAAACAGAG TTCTTGGTTTCAGAGGGAGT TTTT ACTCCCTCTAGAACTTAGAA ATCGTTATCCAGGGA TERM 4761 3301287 - 3301243 - R 71 -8.1 -3.08133 | gap 2 TATCCAGGGACGTAA CCGCTCT-TTACTCCCA-CTT TTAAG AAGATGAGAGTATTAGAGCGG GTAGTCATCGGATAA CLI_3135 3302747 - 3301329 - | GntR family transcriptional regulator TERM 4762 3301791 - 3301813 + g 70 -5 -4.58685 | CGCTATTACGTAACC TATTCTTATT CCA GGTAAGAATA TTTTTGAAAAACTTT TERM 4763 3302518 - 3302533 + g 86 -6.2 -5.48063 | TCTTTTTTCTTTGCA TAGGTA CCAC TACCTA TTTTTTGTATTGCAT CLI_3136 3303927 - 3303034 - | nucleotidyltransferase domain-containing protein TERM 4764 3303459 - 3303437 - G 78 -7 -4.63542 | overlap 3303439 TATAATTTTGAAAAA GCCTCTGTGA GTT TCACAGAATC ACTATAAGCTGTATA CLI_3137 3304298 - 3304077 - | hypothetical protein TERM 4765 3304451 - 3304421 - R 100 -11.4 -5.40072 | opp_overlap 3304421 3304424 TTCTTTTTAAAAAAA CAAGCTATAAATCT AAA AGATTTACAGCTTA TTTTTTATATTTTAT TERM 4766 3304421 - 3304451 + r 93 -7 -5.65678 | opp_overlap 3304421, overlap 3304424 TTCTTTTTAAAAAAA CAAGCTATAAATCT AAA AGATTTACAGCTTA TTTTTTATATTTTAT TERM 4767 3304424 - 3304448 + r 93 -8.7 -4.8277 | opp_overlap 3304421, overlap 3304421 TTTTTAAAAAAACAA GCTATAAATCT AAA AGATTTACAGC TTATTTTTTATATTT CLI_3138 3304629 - 3304471 - | rubredoxin CLI_3139 3306542 - 3304758 - | GTP-binding protein hpt-1 3306684 - 3307208 + | hypoxanthine phosphoribosyltransferase TERM 4768 3307215 - 3307237 + T 100 -12.2 -5.35815 | opp_overlap 3307215 AAAGAATAATAAAAA TGTAAAGCTT ATA AAGCTTTACA TTTTTGTTTAATCTC TERM 4769 3307237 - 3307215 - T 100 -12.2 -5.40014 | opp_overlap 3307215 AAAGAATAATAAAAA TGTAAAGCTT ATA AAGCTTTACA TTTTTGTTTAATCTC CLI_3141 3307799 - 3307245 - | hypothetical protein TERM 4770 3308105 - 3308091 - g 100 -5.6 -6.47325 | opp_overlap 3308091 3308090 AAAAAAGAAAAAAAA GCGCAA ATC TAGCGC CTTTAAAATAATACT TERM 4771 3308458 - 3308444 - g 76 -2.8 -5.62288 | CTAATAAAATAAAAA GGAGTT CTA AACTTC AAGGAGCTTCTACTC TERM 4772 3308894 - 3308881 - g 71 -3.1 -5.24989 | overlap 3308882 TTAGATAGTAAAAAA CTAGC CTTT GCTAA ACCATCTGCCCCTAG TERM 4773 3310381 - 3310362 - g 85 -3.6 -5.8187 | overlap 3310365 TACTGAAGAAAAAAA TAACTCTA ATAC TAGAGATA AAAATAAAGATAAGA TERM 4774 3310378 - 3310365 - g 74 -5.3 -4.96435 | overlap 3310362 TGAAGAAAAAAATAA CTCTA ATAC TAGAG ATAAAAATAAAGATA CLI_3142 3308071 - 3310554 + | 1A family penicillin-binding protein TERM 4775 3310553 - 3310594 + T 100 -14.1 -4.19953 | opp_overlap 3310558 3310567, overlap 3310558 3310567 ATAAAAACAAACAAT AAAAAGAATAAAAACTCCT TCTG GGGAGTTTTTATTCTTTTG TTTTAGGATTAAATA TERM 4776 3310589 - 3310558 - T 100 -13.3 -5.44198 | opp_overlap 3310553 3310558 3310567, overlap 3310567 AACAAACAATAAAAA GAATAAAAACTCC TTCTGG GGAGTTTTTATTC TTTTGTTTTAGGATT TERM 4777 3310558 - 3310589 + T 100 -14 -5.10163 | opp_overlap 3310558 3310567, overlap 3310553 3310567 AACAAACAATAAAAA GAATAAAAACTCCT TCTG GGGAGTTTTTATTC TTTTGTTTTAGGATT TERM 4778 3310567 - 3310580 + T 78 -4.5 -5.47964 | opp_overlap 3310567 3310558, overlap 3310558 3310553 TAAAAAGAATAAAAA CTCCT TCTG GGGAG TTTTTATTCTTTTGT TERM 4779 3310580 - 3310567 - T 75 -3.8 -5.51353 | opp_overlap 3310558 3310553 3310567, overlap 3310558 TAAAAAGAATAAAAA CTCC TTCTGG GGAG TTTTTATTCTTTTGT CLI_3143 3310940 - 3310584 - | SpoVA family protein CLI_3144 3311963 - 3310956 - | stage V sporulation protein AD TERM 4780 3311882 - 3311908 + g 74 -6.6 -4.29139 | opp_overlap 3311894, overlap 3311897 3311905 GCCCCTCTCCCTCTT TAGGTCCAACTA TAC TAGTAGTACCTA TTATTTTAGGTTTAC CLI_3145 3312441 - 3311986 - | SpoVA family protein TERM 4781 3312618 - 3312639 + r 100 -10.3 -4.85599 | opp_overlap 3312618 ACAAAAAACAAAAAA CCATATGAA AATA TTCATATGG TTTTTATACAGTAAG TERM 4782 3312639 - 3312618 - R 100 -10.3 -6.07374 | opp_overlap 3312618 ACAAAAAACAAAAAA CCATATGAA AATA TTCATATGG TTTTTATACAGTAAG sigF 3313398 - 3312643 - | sporulation sigma factor SigF spoIIAB 3313839 - 3313417 - | anti-sigma F factor spoIIAA 3314191 - 3313856 - | anti-sigma F factor antagonist TERM 4783 3314463 - 3314452 - R 70 -4.4 -4.94222 | opp_overlap 3314453, overlap 3314439 3314453 AAGAAGTTATAAAAA CTTC TAAG GAAG AAATATTTGTAGCTC CLI_3149 3316269 - 3314536 - | modification methylase family protein CLI_3150 3316336 - 3317310 + | polysaccharide deacetylase family protein TERM 4784 3317342 - 3317379 + T 72 -5.1 -4.98531 | gap 1, opp_overlap 3317342 TTTTTATAATAAAAA GCTATGAGTTTAACAATA TAA TATTGC-AAATTCGTAGC TTTTTAATTTAAAAA CLI_3151 3318117 - 3317401 - | WecB/TagA/CpsF family glycosyl transferase TERM 4785 3318026 - 3318009 - G 76 -6.3 -4.57353 | opp_overlap 3318009 3318004 3318010, overlap 3318010 GTCCATTATATAAAA CTTCTGG ATTA CCAGAAA TTATATTAACTTTTT TERM 4786 3318264 - 3318313 + r 75 -9.3 -2.57211 | opp_overlap 3318264 3318262 3318267, overlap 3318253 3318263 3318266 TGCTCTCTATAAACA GAGTTCTTGGCTTTAGAGGGAGT TTTT ACCCCCACTGAAGCTTAGAAATC GTTATCCAGGGACGT CLI_3152 3319098 - 3318445 - | sugar transferase family protein CLI_3153 3320543 - 3319119 - | putative polysaccharide transporter TERM 4787 3320477 - 3320466 - G 75 -4.4 -5.28683 | overlap 3320476 AGGAACAGTAAAAAA GCTA ATAA TAGC CGATAATATTGGCCC mviN 3322493 - 3320937 - | integral membrane protein MviN CLI_3155 3323615 - 3322512 - | glycosyl transferase, group 1 family protein TERM 4788 3322566 - 3322555 - G 70 -4.4 -4.88736 | opp_overlap 3322555 TAGGATTTACAAAAA CTCT CCAT AGAG TATTTATTAATTACA TERM 4789 3323686 - 3323651 - R 78 -9.3 -3.04937 | opp_overlap 3323651 3323653 3323660, overlap 3323660 ACAAATATAATGATA TTTAAAAAAGGAGTT TTAAAC AACTCCTTTTTTATA TTTATTAATAATTTA TERM 4790 3323651 - 3323686 + r 89 -9.3 -4.30833 | opp_overlap 3323651 3323660, overlap 3323653 3323660 ACAAATATAATGATA TTTAAAAAAGGAGTT TTAAAC AACTCCTTTTTTATA TTTATTAATAATTTA TERM 4791 3323653 - 3323684 + r 95 -11.9 -3.74047 | opp_overlap 3323651 3323660, overlap 3323651 3323660 AAATATAATGATATT TAAAAAAGGAGTT TTAAAC AACTCCTTTTTTA TATTTATTAATAATT TERM 4792 3323660 - 3323677 + r 82 -5.6 -5.61913 | opp_overlap 3323651 3323660, overlap 3323653 3323651 ATGATATTTAAAAAA GGAGTT TTAAAC AACTCC TTTTTTATATTTATT TERM 4793 3323677 - 3323660 - R 78 -5.6 -5.13473 | opp_overlap 3323660 3323653 3323651, overlap 3323651 ATGATATTTAAAAAA GGAGTT TTAAAC AACTCC TTTTTTATATTTATT CLI_3156 3324852 - 3323725 - | glycosyl transferase, group 1 family protein TERM 4794 3324954 - 3324938 - R 83 -6.6 -5.23316 | opp_overlap 3324938 TATTACATTAAAAAA GGAGTT TTTAT AACTCC TTTTTACAAAGATCA TERM 4795 3324938 - 3324954 + r 77 -6.6 -4.57569 | opp_overlap 3324938 TATTACATTAAAAAA GGAGTT TTTAT AACTCC TTTTTACAAAGATCA CLI_3157 3326199 - 3324967 - | exopolysaccharide biosynthesis family protein CLI_3158 3327503 - 3326277 - | glycosyl transferase, group 1 family protein TERM 4796 3326597 - 3326614 + g 77 -8.5 -3.80174 | opp_overlap 3326591 TTAAAGGAACTACGG TAGCATC CATA GATGCTA TTATTCTAGGCATAT TERM 4797 3327260 - 3327277 + g 70 -8.5 -3.17685 | overlap 3327252 3327248 TTCTAAGTCTTTTTA CAAAGGA TTTA TCCTTTG TTGCATATATACTTG CLI_3159 3328580 - 3327522 - | UDP-N-acetylglucosamine 2-epimerase CLI_3160 3329674 - 3328580 - | glycosyl transferase, group 1 family protein CLI_3161 3330800 - 3329697 - | hypothetical protein CLI_3162 3332208 - 3330790 - | hypothetical protein TERM 4798 3331280 - 3331259 - G 71 -7.3 -3.71291 | overlap 3331257 AATAATTTTAAAATA GTTGGAGAA AAAC TTCTCCCAC CTAAATATGGAATAT CLI_3163 3333317 - 3332223 - | putative internalin TERM 4799 3333049 - 3333062 + g 85 -3.9 -5.71712 | TTTTGAATACCTTTG TTAGA TGCA TCTAA TTTTTTTATATCAAC TERM 4800 3333292 - 3333310 + g 74 -6.2 -4.47259 | overlap 3333280 3333290 TTCTTAAAATTGTTT TTAATTTT ATT AAAATTAA TTTTCATATTATCCT TERM 4801 3333330 - 3333352 + r 93 -8 -5.22768 | opp_overlap 3333336, overlap 3333331 CATATTATCCTCCAA TTAAAATAAA ATT TTTATTTTAA TTTATTTTTTATTCT TERM 4802 3333331 - 3333356 + r 77 -3.5 -5.70522 | opp_overlap 3333336, overlap 3333330 ATATTATCCTCCAAT TAAAATAAAAT TTTT ATTTTAATTTA TTTTTTATTCTTCTT CLI_3164 3334661 - 3333354 - | polysaccharide biosynthesis protein TERM 4803 3333542 - 3333508 - G 70 -8.6 -2.54707 | opp_overlap 3333493, overlap 3333500 3333492 3333507 3333505 3333503 3333510 3333512 3333539 CCATATACAATATAT GATATTGTAGATGCAG CTG CTGCACCATCAATACC CCATTTAGGTATAAA TERM 4804 3334305 - 3334293 - G 76 -6.3 -4.67011 | AATTGTATTTAAAAA TGTAC AAA GTACA ATACTAAATCCAGCT CLI_3165 3335438 - 3334692 - | putative acetyltransferase TERM 4805 3335464 - 3335517 + r 82 -8.6 -4.46652 | opp_overlap 3335465, overlap 3335465 3335512 CTATATTAAAATAAA ATTTTAAAATTACCACCATAATAT AATATC ATATTTTGATGGTAATTTTAAAAA TTTAATTTTTATTTA TERM 4806 3335516 - 3335465 - R 100 -15 -5.16132 | opp_overlap 3335464 3335465 3335512 TATATTAAAATAAAA TTTTAAAATTACCACCATAATATA ATAT CATATTTTGATGGTAATTTTAAAA ATTTAATTTTTATTT TERM 4807 3335465 - 3335516 + r 93 -12.1 -3.25551 | opp_overlap 3335465, overlap 3335464 3335512 TATATTAAAATAAAA TTTTAAAATTACCACCATAATAT AATATC ATATTTTGATGGTAATTTTAAAA ATTTAATTTTTATTT CLI_3166 3336647 - 3335538 - | NAD-binding Rossmann fold family oxidoreductase TERM 4808 3336670 - 3336703 + r 74 -8.3 -3.44876 | opp_overlap 3336663 3336672, overlap 3336666 3336672 3336699 CCTCCAAATTTTATT AATTAGGATAAGTCC AAAA GAACTTATCCTAATA TTAATATTATAGTTT TERM 4809 3336701 - 3336672 - R 100 -13.1 -3.2048 | opp_overlap 3336670 3336666 3336672 3336699, overlap 3336663 TCCAAATTTTATTAA TTAGGATAAGTCC AAAA GAACTTATCCTAA TATTAATATTATAGT TERM 4810 3336672 - 3336701 + r 90 -10.9 -3.28173 | opp_overlap 3336672 3336663, overlap 3336670 3336666 3336699 TCCAAATTTTATTAA TTAGGATAAGTCC AAAA GAACTTATCCTAA TATTAATATTATAGT CLI_3167 3338026 - 3336710 - | UDP-glucose/GDP-mannose dehydrogenase family protein CLI_3168 3340021 - 3338156 - | exopolysaccharide biosynthesis protein TERM 4811 3339910 - 3339884 - G 71 -7.6 -3.39595 | overlap 3339885 TGGAATTACTGATAA CTTAAAAAATAT CAT ATATTTTTTAAA TTCCGAAGCCATAGA TERM 4812 3339909 - 3339885 - G 70 -8.9 -2.63435 | overlap 3339884 GGAATTACTGATAAC TTAAAAAATAT CAT ATATTTTTTAA ATTCCGAAGCCATAG TERM 4813 3340190 - 3340168 - R 100 -9.2 -6.11229 | opp_overlap 3340168 AGTAAAACAAAAAAA CGTTGGCA AAGGACA TGCCAACG TTTTTTAACTACATG TERM 4814 3340168 - 3340190 + r 100 -9.2 -5.09895 | opp_overlap 3340168 AGTAAAACAAAAAAA CGTTGGCA AAGGACA TGCCAACG TTTTTTAACTACATG CLI_3169 3343087 - 3340199 - | putative N-acetylmuramoyl-L-alanine amidase TERM 4815 3341020 - 3340996 - G 73 -9.5 -2.50816 | opp_overlap 3340983 3340981 3340996, overlap 3340995 3340998 GCTTTATCCATGAAT TACTGGATAAA TCT TTTATCCAATA TTCATACAATACTCC TERM 4816 3342065 - 3342079 + g 81 -6.4 -5.02074 | opp_overlap 3342053 TAAGCTTACTTCTAA GCTGCT AAT AGTAGC TTTTTTAAGGGATGC TERM 4817 3343212 - 3343155 - R 70 -7.8 -3.33525 | gap 2, opp_overlap 3343171, overlap 3343171 TTTATTTATATAATA TCTAAAATA--TAAAAAACCATCAATTA TATG TAATTAATGGTTTTTTATTTATTTTAAA ACTAGCATAATTAGA TERM 4818 3343194 - 3343171 - R 100 -7.6 -5.63645 | opp_overlap 3343171, overlap 3343155 CTAAAATATAAAAAA CCATCAATTA TATG TAATTAATGG TTTTTTATTTATTTT TERM 4819 3343171 - 3343194 + r 90 -5.4 -5.88476 | opp_overlap 3343171 3343155 CTAAAATATAAAAAA CCATCAATTA TATG TAATTAATGG TTTTTTATTTATTTT CLI_3170 3346189 - 3343286 - | N-acetylmuramoyl-L-alanine amidase TERM 4820 3346357 - 3346330 - R 77 -7.9 -4.18197 | opp_overlap 3346330 ATTTTGTAGTTAAAA TATAGAGGCTA CTTTCT TAACCTCTATA TTTACAGAATATTTT CLI_3171 3349843 - 3346379 - | beta-N-acetylglucosaminidase TERM 4821 3349428 - 3349438 + g 79 -5.4 -5.28166 | TGTATAATATTTTTA TCAG TTT CTGA TTTTTCTTGATTTTC TERM 4822 3349936 - 3349920 - R 79 -2.2 -6.09196 | opp_overlap 3349912 TTTAAAATAAAAAAA GATGGC TTTTC ACCACC TTTTTTTATTCAGTT galU 3350838 - 3349942 - | UTP-glucose-1-phosphate uridylyltransferase TERM 4823 3350510 - 3350523 + g 70 -5.3 -4.65219 | CAACTTATAGCATGC CCTAA TCCT TTAGG TTCTTTTTGTCTTAT CLI_3173 3351964 - 3350888 - | TPR domain-containing protein TERM 4824 3351797 - 3351784 - G 85 -2.5 -5.93809 | CTTCTACAAAAAAAA TAATA GGTA TATTA TCTAAATCTTCACTT TERM 4825 3352099 - 3352045 - R 100 -28 -5.30339 | opp_overlap 3352045 ATGAAAATACAAAAA TATTTAAATTATGCATAGGATAATTT AAA AAATTATCCTATGCATAATTTAAATA TTTGTAGTTTTAAAA TERM 4826 3352045 - 3352099 + r 100 -28 -4.208 | opp_overlap 3352045 ATGAAAATACAAAAA TATTTAAATTATGCATAGGATAATTT AAA AAATTATCCTATGCATAATTTAAATA TTTGTAGTTTTAAAA CLI_3174 3353836 - 3352109 - | phosphoglucomutase/phosphomannomutase family protein TERM 4827 3353104 - 3353118 + g 73 -8.6 -3.12668 | ATAAAGCTCTTCTTA CTGGAA CAT TTCCAG TTCCATGTAGCGGTG CLI_3175 3355260 - 3354724 - | ribosomal 5S rRNA E-loop binding protein Ctc/L25/TL5 CLI_3176 3355467 - 3356927 + | Orn/Lys/Arg decarboxylase CLI_3177 3357946 - 3357113 - | hypothetical protein TERM 4828 3357303 - 3357315 + g 93 -4.9 -6.02919 | overlap 3357301 TTATTAAATCTTATG GAAAA AGA TTTTC TTTTTTTATTTATAC TERM 4829 3358089 - 3358051 - R 80 -6.2 -5.24531 | opp_overlap 3358051 3358055 ATGCTTTATAAAAAA TAAATAAGCTCTTGTATA TAT TAATTAAGAGCTTATTTA TTAATTAATTTTAAA TERM 4830 3358051 - 3358089 + r 75 -8.4 -3.54177 | opp_overlap 3358051, overlap 3358055 ATGCTTTATAAAAAA TAAATAAGCTCTTGTATA TAT TAATTAAGAGCTTATTTA TTAATTAATTTTAAA CLI_3178 3359045 - 3358143 - | phosphate acetyl/butyryl transferase CLI_3179 3360510 - 3359497 - | dehydrogenase, FMN-dependent CLI_3180 3361216 - 3360746 - | hypothetical protein CLI_3181 3363770 - 3361404 - | recombination and DNA strand exchange inhibitor protein CLI_3182 3366269 - 3363903 - | U32 family peptidase TERM 4831 3364678 - 3364698 + g 77 -8.5 -3.73968 | CTTAACTGTTCATAG GTATATATT GAA AATATATAC TTTGGTAAACCATTT TERM 4832 3364770 - 3364782 + g 82 -7.7 -4.47977 | AAGCTCTTTTACTTT TCCAC AAT GTGGA TTATTTTGTATTATT TERM 4833 3365150 - 3365171 + g 73 -3.9 -5.3104 | gap 1 TTTTATATAATTCAT CCTT-AAATT TAT AATTTGAAGG TTTTATTTTTACTAA TERM 4834 3366583 - 3366553 - R 84 -9.1 -4.22949 | gap 1, opp_overlap 3366552 GATAATATATAGAAA GACTTCGCATCCCC ATGC AGGGAC-CGAAGTC ATAATATCCAAAGTA CLI_3183 3367791 - 3366913 - | hypothetical protein TERM 4835 3367900 - 3367918 + H 73 -5.4 -4.81734 | opp_overlap 3367893, overlap 3367890 TTTAATTATGTAATT TTTGTGTA AAT TACATAAA TTTTTAGTAATATTT CLI_3184 3367996 - 3369771 + | hypothetical protein TERM 4836 3369873 - 3369846 - T 77 -6.4 -4.59773 | opp_overlap 3369846 TGGGATTTCTAAAAA CTCTTTGCATTT TATT AAATACAAGGAG TTTAATTATTAGCTG TERM 4837 3369846 - 3369873 + T 71 -6.4 -4.08689 | opp_overlap 3369846 TGGGATTTCTAAAAA CTCTTTGCATTT TATT AAATACAAGGAG TTTAATTATTAGCTG CLI_3185 3370400 - 3369942 - | hypothetical protein TERM 4838 3370014 - 3370071 + g 93 -8.9 -4.86902 | ATCAACTATATTTTG TCCTATTACTATTCCAAGGC-TAAC TTTTCTTATC GTTAAGCCTTGGAA-AGTATTAGGA TTTTGTTGTCCTTTA TERM 4839 3370983 - 3370973 - g 70 -4 -4.94243 | opp_overlap 3370980 TTAAAAAAATTAAAA TCTA GCT TAGA TAAATCTATTGATTC TERM 4840 3371092 - 3371106 + G 70 -5.8 -4.2679 | ACGTGCAAATAATTT TAAATG GTA CATTTA TTTTAGTAACACTTA CLI_3186 3370676 - 3371155 + | glycosyl transferase, group 2 family protein TERM 4841 3371168 - 3371133 - T 100 -13.6 -5.67063 | gap 1, opp_overlap 3371133 3371136 CTTATTATAAAAAAA TAACCGTACACACATTA GCA TAA-GTGTGTACGGCTA TTTTTTATTTACTTT TERM 4842 3371133 - 3371168 + T 100 -11.4 -5.74086 | gap 1, opp_overlap 3371133, overlap 3371136 CTTATTATAAAAAAA TAACCGTACACACATTA GCA TAA-GTGTGTACGGCTA TTTTTTATTTACTTT TERM 4843 3371136 - 3371165 + T 100 -13.1 -3.25791 | gap 1, opp_overlap 3371133, overlap 3371133 ATTATAAAAAAATAA CCGTACACACATTA GCA TAA-GTGTGTACGG CTATTTTTTATTTAC CLI_3187 3371767 - 3371177 - | hypothetical protein TERM 4844 3371236 - 3371254 + g 86 -3.2 -5.96219 | opp_overlap 3371236 TTTCTTTAACCAAAT TTAATTGA CTA TCCATTAA TTTTTTTTCTAAATC pheT 3374353 - 3371972 - | phenylalanyl-tRNA synthetase subunit beta TERM 4845 3372711 - 3372725 + g 82 -5 -5.47159 | opp_overlap 3372711 CTCATTATACTAAAA TCTTCT CCT AGAGGA TTTTTTATCTTAACA TERM 4846 3373510 - 3373524 + g 76 -2.8 -5.59962 | CTTTTGCTCTTTCCA CCACTA TAG TATTGG TTTTTATTTCTTTTC pheS 3375533 - 3374514 - | phenylalanyl-tRNA synthetase subunit alpha TERM 4847 3375611 - 3375589 - R 100 -7.7 -5.55769 | TTTTATAATAAAAAA GTCCATCCC ATAAA GGGACGAAC TAAATCCGCGGTACC CLI_3190 3376659 - 3375880 - | RNA methyltransferase CLI_3191 3377412 - 3376750 - | TrkA family potassium uptake protein CLI_3192 3378766 - 3377423 - | TrkH family potassium uptake protein TERM 4848 3378850 - 3378868 + r 79 -8.9 -3.59882 | opp_overlap 3378850, overlap 3378846 TAAAATATTAAAAAA TACGGCT ATTTA AGCCGTA TTAATTCTTATAATT TERM 4849 3378868 - 3378850 - R 100 -8.9 -5.36314 | opp_overlap 3378850 3378846 TAAAATATTAAAAAA TACGGCT ATTTA AGCCGTA TTAATTCTTATAATT rplT 3379249 - 3378890 - | 50S ribosomal protein L20 TERM 4850 3379219 - 3379233 + g 77 -5.7 -4.87626 | TTTTATGACGTTTAC GAGCA TTCAT TGCTC TTTTTACTCTTGCCA rpmI 3379476 - 3379279 - | 50S ribosomal protein L35 infC 3380052 - 3379498 - | translation initiation factor IF-3 TERM 4851 3379733 - 3379749 + g 79 -7.3 -4.50487 | TCATGTGCTTCTATA GTTGGAC TTA GTCTAAC TTCTTTTATGTTTAT TERM 4852 3380075 - 3380090 + r 87 -10.4 -3.1505 | opp_overlap 3380075 GTATAATAAATAAAA GACGGC ATAA GCCGTC TTCATAAACAATAAT TERM 4853 3380090 - 3380075 - R 100 -10.4 -5.14682 | opp_overlap 3380075 GTATAATAAATAAAA GACGGC ATAA GCCGTC TTCATAAACAATAAT TERM 4854 3380157 - 3380124 - R 71 -8.3 -2.99204 | gap 1, opp_overlap 3380151 3380155 AATTAAATTTATATA CTCTAACCTTACTAGC TAT GCT-GTAAGGTGAGAA ACGGCCTGTTTCTAC thrS 3382214 - 3380307 - | threonyl-tRNA synthetase TERM 4855 3380459 - 3380471 + g 71 -7.7 -3.45788 | TATATGGCACTTTTT GAAGC TGA GCTTC TCTTATCTTATACCC TERM 4856 3382256 - 3382278 + r 70 -7.7 -3.46345 | opp_overlap 3382256, overlap 3382254 3382252 TTACAAATAAAAAAA CTCATCCCA ACACA TGGGACGAG TGTATTTTCGTGGTT TERM 4857 3382278 - 3382256 - R 100 -9.9 -6.02919 | opp_overlap 3382256 3382254 3382252 TTACAAATAAAAAAA CTCATCCCA ACACA TGGGACGAG TGTATTTTCGTGGTT CLI_3197 3383461 - 3382562 - | hypothetical protein TERM 4858 3383559 - 3383532 - H 73 -2.8 -5.71983 | opp_overlap 3383532 3383534, overlap 3383534 GCAATTATAAAAAAA TATCGACATATT ACTC AATATGTTGAAA TTTTTTTCAAATAAA TERM 4859 3383532 - 3383559 + H 77 -5 -5.44119 | opp_overlap 3383532 3383534, overlap 3383534 GCAATTATAAAAAAA TATCGACATATT ACTC AATATGTTGAAA TTTTTTTCAAATAAA CLI_3198 3383616 - 3384323 + | hypothetical protein TERM 4860 3384455 - 3384430 - T 100 -12.1 -5.5762 | opp_overlap 3384430 AGTAAATATAAAAAA TACACATCATA AACA TATGATGTGTA TTTTTTTGTTATACT TERM 4861 3384430 - 3384455 + T 100 -12.1 -5.89921 | opp_overlap 3384430 AGTAAATATAAAAAA TACACATCATA AACA TATGATGTGTA TTTTTTTGTTATACT CLI_3199 3386085 - 3384514 - | ABC transporter, permease protein CLI_3200 3386782 - 3386087 - | ABC transporter, ATP-binding protein TERM 4862 3387069 - 3387092 + r 100 -9.8 -4.56597 | opp_overlap 3387030 3387029 3387069 TAAGCATAAAAAAAA GAGATAATAT TTAA ATATTATCTC TTTTTGGAGGCGCCA TERM 4863 3387092 - 3387069 - R 100 -9.8 -6.02345 | opp_overlap 3387069, overlap 3387030 3387029 TAAGCATAAAAAAAA GAGATAATAT TTAA ATATTATCTC TTTTTGGAGGCGCCA hsp33 3388450 - 3387560 - | Hsp33-like chaperonin CLI_3209 3389228 - 3388488 - | hypothetical protein TERM 4864 3389298 - 3389258 - R 71 -6.4 -4.07789 | overlap 3389256 3389260 TAATTTATAAAAATA TACTTACCTAATAAATAT TATAT ACTTTTATTAGGTAAGTC AATAGATTAGTGCTT TERM 4865 3389296 - 3389260 - R 79 -9 -3.61603 | overlap 3389258 3389256 ATTTATAAAAATATA CTTACCTAATAAATAT TATAT ACTTTTATTAGGTAAG TCAATAGATTAGTGC CLI_3210 3389586 - 3389314 - | small acid-soluble spore protein TERM 4866 3389843 - 3389803 - R 71 -7.1 -3.93913 | opp_overlap 3389803, overlap 3389797 AAACATAAATTTAAA GAGAAGTATCTCAAAAT ACATACA ATTTTGAAATCCCTCTC TTTTTAAATTTATTG CLI_3211 3390845 - 3389886 - | oligopeptide/dipeptide ABC transporter, ATP-binding protein TERM 4867 3390285 - 3390269 - G 78 -9.5 -3.33261 | opp_overlap 3390268 3390267 TTTGAAGGTCTATAA GCAAGTT TAC AACTTGC GCTTGTATCGATACA CLI_3212 3391864 - 3390845 - | oligopeptide/dipeptide ABC transporter, ATP-binding protein CLI_3213 3392795 - 3391878 - | oligopeptide/dipeptide ABC transporter, permease protein CLI_3214 3393740 - 3392811 - | oligopeptide/dipeptide ABC transporter, permease protein TERM 4868 3393805 - 3393779 - R 100 -15.2 -3.4285 | opp_overlap 3393786 TTATGTAACTTATAA CAGCAGAGCCAT TAA AAGGCTCTGCTG CATAAAATCATACTA CLI_3215 3395503 - 3393821 - | oligopeptide/dipeptide ABC transporter, oligopeptide/dipeptide-binding protein TERM 4869 3395554 - 3395537 - H 74 -4.9 -5.26316 | opp_overlap 3395540, overlap 3395525 3395551 TTATTTTATAAAAAA CAAGTGA AAAT TCACTTA TTTCCAATAAAAATT asd 3395987 - 3396979 + | aspartate-semialdehyde dehydrogenase dapA 3397002 - 3397880 + | dihydrodipicolinate synthase TERM 4870 3397882 - 3397912 + F 82 -9.9 -3.08934 | opp_overlap 3397883 3397887, overlap 3397887 GTAACTTAATGTAAT ATAAAGTGTAGAG TTTAT CTCTACACTTTAC TATTAAGATATCTAA TERM 4871 3397911 - 3397883 - f 100 -13.4 -3.16564 | opp_overlap 3397882 3397887, overlap 3397887 TAACTTAATGTAATA TAAAGTGTAGAG TTTAT CTCTACACTTTA CTATTAAGATATCTA TERM 4872 3397907 - 3397887 - f 95 -9.8 -4.23794 | opp_overlap 3397882 3397887, overlap 3397883 TTAATGTAATATAAA GTGTAGAG TTTAT CTCTACAC TTTACTATTAAGATA TERM 4873 3397887 - 3397907 + F 93 -9.8 -3.93038 | opp_overlap 3397887 3397883, overlap 3397882 TTAATGTAATATAAA GTGTAGAG TTTAT CTCTACAC TTTACTATTAAGATA dapB-2 3398103 - 3398858 + | dihydrodipicolinate reductase CLI_3219 3400567 - 3399398 - | aminotransferase, classes I and II CLI_3220 3400825 - 3401535 + | putative 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase TERM 4874 3401572 - 3401537 - T 86 -7.8 -4.88795 | opp_overlap 3401539 3401546, overlap 3401538 3401539 3401541 ATTTAAGAAAATAAA TTTATGAAAGATAGTT TTAA AACTATCTTTCATATT TGATAAAGTTTTCTA TERM 4875 3401571 - 3401538 - T 95 -11.3 -3.5165 | opp_overlap 3401539 3401546, overlap 3401537 3401539 3401541 TTTAAGAAAATAAAT TTATGAAAGATAGTT TTAA AACTATCTTTCATAT TTGATAAAGTTTTCT TERM 4876 3401570 - 3401539 - T 100 -14.8 -2.69906 | opp_overlap 3401539 3401546, overlap 3401538 3401537 3401541 TTAAGAAAATAAATT TATGAAAGATAGTT TTAA AACTATCTTTCATA TTTGATAAAGTTTTC TERM 4877 3401539 - 3401570 + T 100 -14.8 -3.79021 | opp_overlap 3401539 3401538 3401537 3401541, overlap 3401546 TTAAGAAAATAAATT TATGAAAGATAGTT TTAA AACTATCTTTCATA TTTGATAAAGTTTTC TERM 4878 3401568 - 3401541 - T 91 -13 -2.87146 | opp_overlap 3401539 3401546, overlap 3401539 3401538 3401537 AAGAAAATAAATTTA TGAAAGATAGTT TTAA AACTATCTTTCA TATTTGATAAAGTTT TERM 4879 3401546 - 3401563 + T 73 -7.1 -4.02719 | opp_overlap 3401541 3401539 3401538 3401537, overlap 3401539 AATAAATTTATGAAA GATAGTT TTAA AACTATC TTTCATATTTGATAA TERM 4880 3401602 - 3401659 + T 100 -12.5 -5.60556 | gap 1, opp_overlap 3401602 3401604 3401614, overlap 3401604 3401611 3401614 ATTAATTTATTTAAA TATAC-TTGAGAATAGTATGTACAACTT AAA AAGTTGTACATACTATTCTTTATGCATG TTTTTCTTTTATATT TERM 4881 3401659 - 3401602 - T 91 -10.3 -3.68886 | gap 1, opp_overlap 3401602 3401604 3401611 3401614, overlap 3401604 3401614 ATTAATTTATTTAAA TATAC-TTGAGAATAGTATGTACAACTT AAA AAGTTGTACATACTATTCTTTATGCATG TTTTTCTTTTATATT TERM 4882 3401604 - 3401657 + T 100 -12.9 -4.39746 | gap 1, opp_overlap 3401604 3401602 3401614, overlap 3401602 3401611 3401614 TAATTTATTTAAATA TAC-TTGAGAATAGTATGTACAACTT AAA AAGTTGTACATACTATTCTTTATGCA TGTTTTTCTTTTATA TERM 4883 3401657 - 3401604 - T 95 -12.9 -3.42283 | gap 1, opp_overlap 3401602 3401604 3401611 3401614, overlap 3401602 3401614 TAATTTATTTAAATA TAC-TTGAGAATAGTATGTACAACTT AAA AAGTTGTACATACTATTCTTTATGCA TGTTTTTCTTTTATA TERM 4884 3401611 - 3401649 + T 100 -22.2 -4.02468 | opp_overlap 3401604 3401602 3401614, overlap 3401604 3401602 3401614 TTTAAATATACTTGA GAATAGTATGTACAACTT AAA AAGTTGTACATACTATTC TTTATGCATGTTTTT TERM 4885 3401646 - 3401614 - T 100 -18.1 -3.3705 | opp_overlap 3401611 3401604 3401602 3401614, overlap 3401604 3401602 AAATATACTTGAGAA TAGTATGTACAACTT AAA AAGTTGTACATACTA TTCTTTATGCATGTT TERM 4886 3401614 - 3401646 + T 100 -18.1 -4.10791 | opp_overlap 3401614 3401604 3401602, overlap 3401611 3401604 3401602 AAATATACTTGAGAA TAGTATGTACAACTT AAA AAGTTGTACATACTA TTCTTTATGCATGTT CLI_3221 3402352 - 3401651 - | single-strand DNA-binding protein CLI_3222 3402927 - 3402430 - | hypothetical protein TERM 4887 3402939 - 3402974 + r 95 -12.2 -3.7229 | opp_overlap 3402944 3402949, overlap 3402949 TCATTTTACACGCTC CTAAAGAAAATAACTA TTTT TAGTTATTTTCTTCAG TTTACAATATTTTAT TERM 4888 3402969 - 3402944 - R 91 -10.7 -3.55071 | opp_overlap 3402939 3402949, overlap 3402949 TTACACGCTCCTAAA GAAAATAACTA TTTT TAGTTATTTTC TTCAGTTTACAATAT TERM 4889 3402949 - 3402964 + r 70 -4.8 -4.75309 | opp_overlap 3402944 3402949, overlap 3402939 CGCTCCTAAAGAAAA TAACTA TTTT TAGTTA TTTTCTTCAGTTTAC TERM 4890 3402964 - 3402949 - R 70 -4.8 -4.86731 | opp_overlap 3402949 3402939, overlap 3402944 CGCTCCTAAAGAAAA TAACTA TTTT TAGTTA TTTTCTTCAGTTTAC CLI_3223 3403878 - 3403126 - | polysaccharide deacetylase family protein TERM 4891 3403916 - 3403928 + H 77 -3.5 -5.72616 | overlap 3403909 3403918 TTCTTCATTTTTATT TATAT AAA ATATA TTTTTTTATATGCAT CLI_3224 3404042 - 3404569 + | hypothetical protein TERM 4892 3404612 - 3404586 - T 82 -8.1 -4.47259 | opp_overlap 3404583 3404586 ATTATAATACTAAAA TACCTGTAGGT TCTCC ACCTATAGGTA TGGATTTTTTATTGT TERM 4893 3404586 - 3404612 + T 85 -10.3 -3.00342 | opp_overlap 3404586, overlap 3404583 ATTATAATACTAAAA TACCTGTAGGT TCTCC ACCTATAGGTA TGGATTTTTTATTGT CLI_3225 3405456 - 3404572 - | hypothetical protein TERM 4894 3404969 - 3404985 + g 81 -9.5 -3.67368 | overlap 3404967 GTGAAAACAGCTTTT GTTGGAT AAG ATCCAAC TCTTATATTTTTTAC CLI_3226 3405596 - 3405856 + | hypothetical protein TERM 4895 3405872 - 3405836 - T 100 -7.5 -5.71638 | opp_overlap 3405844, overlap 3405841 CAAGAAGCAAAAAAA CAAAATAAGGAAAGCAT CTA ACACTTTCCTTACCTTA TTAATTTTCTCATAT TERM 4896 3405867 - 3405841 - T 100 -9.6 -5.57888 | opp_overlap 3405844, overlap 3405836 AGCAAAAAAACAAAA TAAGGAAAGCAT CTA ACACTTTCCTTA CCTTATTAATTTTCT folC 3407154 - 3405865 - | FolC bifunctional protein TERM 4897 3406353 - 3406363 + g 91 -5.4 -5.69793 | opp_overlap 3406353 CTAAGGCTAATATAA CTGT AAT ACAG TTTTTTATTTGATGT TERM 4898 3407417 - 3407389 - R 73 -7.7 -3.7659 | overlap 3407383 3407390 ACAATAAAATTATAA TTTATTCTATTAA ATA TTAATAGAATAAT CGTAAAAAATTCACT TERM 4899 3407416 - 3407390 - R 85 -11.2 -2.84327 | overlap 3407389 3407383 CAATAAAATTATAAT TTATTCTATTAA ATA TTAATAGAATAA TCGTAAAAAATTCAC TERM 4900 3407535 - 3407579 + r 78 -9.5 -3.08133 | gap 2, opp_overlap 3407534 3407532 3407531 TTATCCGATAACTAC CCGCTCTAATACTCCCGTCTT CTTCA AAG-TGGGAGTAA-AGAGCGG TTACGTCCCTGGATA TERM 4901 3407647 - 3407596 - R 93 -12.4 -3.28924 | opp_overlap 3407596 3407597 3407600, overlap 3407597 3407599 3407625 TACGTCCCTGGATAA CGATTTCTAAGCTTTAGAGGGAGT AAAA ACTCCCTCTGAAGCCAAGAACTCT GTTTATATTATATTT TERM 4902 3407596 - 3407648 + r 100 -12.2 -4.36854 | gap 1, opp_overlap 3407596 3407597 3407599 3407625, overlap 3407597 3407600 TACGTCCCTGGATAA C-GATTTCTAAGCTTTAGAGGGAGT AAAA ACTCCCTCTGAAGCCAAGAACTCTG TTTATATTATATTTA TERM 4903 3407597 - 3407646 + r 100 -15.9 -3.75997 | opp_overlap 3407596 3407597 3407599 3407625, overlap 3407596 3407600 ACGTCCCTGGATAAC GATTTCTAAGCTTTAGAGGGAGT AAAA ACTCCCTCTGAAGCCAAGAACTC TGTTTATATTATATT TERM 4904 3407646 - 3407597 - R 100 -15.9 -2.57211 | opp_overlap 3407597 3407596 3407600, overlap 3407596 3407599 3407625 ACGTCCCTGGATAAC GATTTCTAAGCTTTAGAGGGAGT AAAA ACTCCCTCTGAAGCCAAGAACTC TGTTTATATTATATT TERM 4905 3407644 - 3407599 - R 91 -12.7 -2.82623 | opp_overlap 3407597 3407596 3407600, overlap 3407597 3407596 3407625 GTCCCTGGATAACGA TTTCTAAGCTTTAGAGGGAGT AAAA ACTCCCTCTGAAGCCAAGAAC TCTGTTTATATTATA TERM 4906 3407600 - 3407643 + r 100 -16.2 -2.65284 | opp_overlap 3407599 3407597 3407596 3407625, overlap 3407597 3407596 TCCCTGGATAACGAT TTCTAAGCTTTAGAGGGAGT AAAA ACTCCCTCTGAAGCCAAGAA CTCTGTTTATATTAT valS 3410375 - 3407730 - | valyl-tRNA synthetase TERM 4907 3408551 - 3408561 + g 75 -4 -5.33331 | ATATCCATTTATCAG CTAT AGT ATAG TTTTTATTATCTTTA CLI_3229 3410902 - 3410396 - | acetyltransferase TERM 4908 3411002 - 3410969 - R 100 -13.3 -5.67529 | overlap 3410957 3410956 AACTAAAAATAAAAA GAGGCCTTTCATCCT TAAA AGGACGAAAAACCTC GCGTTACCACCTTTT CLI_3230 3412733 - 3411489 - | S8/S53 family peptidase CLI_3231 3413017 - 3412733 - | hypothetical protein CLI_3232 3413410 - 3413285 - | hypothetical protein CLI_3233 3414913 - 3413798 - | hypothetical protein CLI_3234 3416360 - 3414954 - | radical SAM domain-containing protein TERM 4909 3416391 - 3416426 + r 100 -11.4 -4.30576 | opp_overlap 3416392 3416396, overlap 3416392 ATCAATTTAATTAAT ATAAACGACATAAAGG ATAA TCTTTATGTCGTTTAA TTTTAATAATAAAGC TERM 4910 3416425 - 3416392 - R 100 -14.2 -3.27109 | opp_overlap 3416391 3416392, overlap 3416396 TCAATTTAATTAATA TAAACGACATAAAG GATAAT CTTTATGTCGTTTA ATTTTAATAATAAAG TERM 4911 3416392 - 3416425 + r 100 -14.9 -3.18024 | opp_overlap 3416392 3416396, overlap 3416391 TCAATTTAATTAATA TAAACGACATAAAGG ATAA TCTTTATGTCGTTTA ATTTTAATAATAAAG TERM 4912 3416421 - 3416396 - R 95 -10.6 -4.2772 | opp_overlap 3416392 3416391, overlap 3416392 TTTAATTAATATAAA CGACATAAAG GATAAT CTTTATGTCG TTTAATTTTAATAAT CLI_3235 3416647 - 3416450 - | hypothetical protein CLI_3236 3418564 - 3416768 - | ABC transporter, ATP-binding protein TERM 4913 3417031 - 3417018 - G 72 -6.7 -4.08317 | opp_overlap 3417018 3417021 GAATTTGAAACTAAA GCTCT AGCT AGAGC TAGTTTTTGTCTTTC TERM 4914 3417021 - 3417034 + g 84 -6.7 -5.24799 | opp_overlap 3417018, overlap 3417018 TTTGAAACTAAAGCT CTAGC TAGA GCTAG TTTTTGTCTTTCTCC TERM 4915 3417169 - 3417183 + g 84 -8.6 -4.21317 | opp_overlap 3417171, overlap 3417166 TACTTTCTTTTATAT TAGGCT TAA AGCCTA TGTTTTCTTTTATAG TERM 4916 3419014 - 3418998 - R 73 -2.9 -5.8096 | TACAAAAAACAAAAA CTAGCCC TTA AGACCAG TTTTGATTTTATTTA TERM 4917 3419055 - 3419077 + r 75 -9.4 -2.54461 | opp_overlap 3419061, overlap 3419054 3419052 3419061 ATACTAAACAGTTCT CTAAAATAAA TCT TTTATTTTAG CTATTAGTATATATT CLI_3237 3419841 - 3419185 - | ABC transporter, ATP-binding protein TERM 4918 3419482 - 3419498 + g 84 -6.7 -5.20216 | ATCTAATAACTCATT TAGATAA TCT TTATCTA TTTTTTCATGATCTA CLI_3238 3422454 - 3419857 - | ABC transporter, permease protein TERM 4919 3420991 - 3421001 + g 82 -4 -5.51165 | TCTATATACATCTTT TACA CCA TGTA TTTTTTTAACGTTTT CLI_3239 3422888 - 3423133 + | ABC transporter substrate-binding protein TERM 4920 3423170 - 3423151 - T 100 -9.4 -5.39681 | opp_overlap 3423151 ACAAGTAAATAAAAA GTAGCTAA AAAT TTAGCTAC TTTTTTAAATTTGTT TERM 4921 3423151 - 3423170 + T 100 -9.4 -5.25805 | opp_overlap 3423151 ACAAGTAAATAAAAA GTAGCTAA AAAT TTAGCTAC TTTTTTAAATTTGTT CLI_3240 3423301 - 3423167 - | hypothetical protein TERM 4922 3423530 - 3423514 - H 83 -6.7 -5.1925 | opp_overlap 3423514 3423516 TTATAACTCAAAAAA TATTCAT GGT ATGAATA TCGTTCGTCTTTTTA CLI_3241 3423623 - 3423859 + | DNA-binding protein TERM 4923 3423884 - 3423924 + F 71 -5.6 -4.72696 | overlap 3423886 AAATGAATGCCTCTT TACCTGCTATAAACTTAT TTTAT AGAAGTTTATAGGAGGGA TTATTTTTGTTTGGG CLI_3242 3423931 - 3424212 + | DNA-binding protein TERM 4924 3424235 - 3424210 - T 100 -8.4 -5.59879 | opp_overlap 3424210 GATAAATATAAAAAA TAAGCCTTGG TATTAT CCAAGACTTA TTTTTGCTTTTCTAT TERM 4925 3424210 - 3424235 + T 80 -6.2 -5.15526 | opp_overlap 3424210 GATAAATATAAAAAA TAAGCCTTGG TATTAT CCAAGACTTA TTTTTGCTTTTCTAT CLI_3243 3424706 - 3424233 - | DNA binding protein TERM 4926 3424268 - 3424285 + g 75 -4.1 -5.22258 | opp_overlap 3424258 CATTACCACTAATTT GTGGAGC ACCT GTTTCAC TTTTATTTTCATTTA CLI_3244 3424932 - 3424783 - | hypothetical protein CLI_3245 3425818 - 3424910 - | plasmid recombination enzyme CLI_3246 3427434 - 3425809 - | TraG/TraD family protein TERM 4927 3426599 - 3426641 + g 93 -5.6 -5.71712 | overlap 3426601 GATTTTTTTCTTAAA TGTGCAGGGTTGAAGGTGCT GGT ACCACTTAAAACCTTGCATA TTTTTTTATCTCCAA TERM 4928 3426601 - 3426639 + g 71 -6 -4.50122 | overlap 3426599 TTTTTTTCTTAAATG TGCAGGGTTGAAGGTGCT GGT ACCACTTAAAACCTTGCA TATTTTTTTATCTCC TERM 4929 3427504 - 3427460 - R 85 -11 -2.93073 | gap 1, opp_overlap 3427470, overlap 3427457 3427470 CCTTTTTAATAATTA GCCACGAGAATGAATAATGGT GAAT ACCTTTATTCATTCT-GTGGA ATAGGGGTTCTAAGG TERM 4930 3427495 - 3427470 - R 70 -7.7 -3.43264 | opp_overlap 3427470, overlap 3427460 3427457 AATTAGCCACGAGAA TGAATAATGGT GAAT ACCTTTATTCA TTCTGTGGAATAGGG TERM 4931 3427470 - 3427495 + r 72 -7.7 -3.50393 | opp_overlap 3427470 3427460 3427457 AATTAGCCACGAGAA TGAATAATGGT GAAT ACCTTTATTCA TTCTGTGGAATAGGG TERM 4932 3427716 - 3427762 + r 72 -8.3 -3.15879 | gap 1, opp_overlap 3427713, overlap 3427713 TACGGTTAGAACTGT TCCGTCATAAAAAATAAA-GGT TTCC ACCATTTATTCTTTATGGCGGC TGATTTCTCTTGTTT TERM 4933 3427889 - 3427860 - R 90 -6.7 -5.77677 | gap 1, opp_overlap 3427860 TAAAATAATAAAAAA GAGATATGATTATT CTA AATA-CCATATCTC TTTTACATCTTTATT CLI_3247 3428069 - 3427869 - | putative DNA-binding protein TERM 4934 3428299 - 3428272 - R 83 -3.5 -6.04324 | opp_overlap 3428272 TCAAAAAATAAAAAA GAAGTAGTTCC AATTAA GAAATTACTTC TTTTTATATTTATTC TERM 4935 3428272 - 3428299 + r 70 -3.5 -5.28414 | opp_overlap 3428272 TCAAAAAATAAAAAA GAAGTAGTTCC AATTAA GAAATTACTTC TTTTTATATTTATTC CLI_3248 3428710 - 3428309 - | resolvase domain-containing protein CLI_3249 3429001 - 3428756 - | hypothetical protein CLI_3250 3429196 - 3429014 - | hypothetical protein TERM 4936 3429358 - 3429341 - R 93 -11.3 -3.43203 | opp_overlap 3429340 3429338 3429336 GTATTATAAGAGTAA GGGAGGA GTTT TCCTCCC CTGTGTTCATAACAA TERM 4937 3429424 - 3429455 + r 88 -6.8 -5.52347 | gap 1, opp_overlap 3429424 TTATTTTTACTAATA GCTTGAT-GACTATT CCC AGTAGTTTATCAAGC TTTTTTAGTTTTCTT TERM 4938 3429621 - 3429595 - R 82 -4.4 -5.7946 | opp_overlap 3429597, overlap 3429597 TTTCCAATAAAAAAA GAGGTACTCCCA TTA CAGAAGTACCTT TAAAATTAATATCTT TERM 4939 3429619 - 3429597 - R 77 -7 -4.54306 | opp_overlap 3429597, overlap 3429595 TCCAATAAAAAAAGA GGTACTCCCA TTA CAGAAGTACC TTTAAAATTAATATC TERM 4940 3429693 - 3429674 - R 100 -10.8 -5.88565 | opp_overlap 3429674 CCCATAAGAAAAAAA CCACCATT AATT AATGGTGG TTTAAAATCGTAATT TERM 4941 3429674 - 3429693 + r 91 -10.8 -3.6284 | opp_overlap 3429674 CCCATAAGAAAAAAA CCACCATT AATT AATGGTGG TTTAAAATCGTAATT CLI_3251 3430554 - 3429817 - | hypothetical protein CLI_3252 3431609 - 3430707 - | putative N-acetylmuramoyl-L-alanine amidase CLI_3253 3432165 - 3431749 - | toxin secretion/phage lysis holin TERM 4942 3432215 - 3432203 - R 79 -4.8 -5.48213 | overlap 3432190 TAGGCAAAATAAAAA GACC TATAT GGTC CACTATTTTGCCTTT CLI_3254 3432384 - 3432262 - | hypothetical protein CLI_3255 3432772 - 3432377 - | hypothetical protein CLI_3256 3434450 - 3432786 - | putative phage structural protein TERM 4943 3433796 - 3433806 + g 70 -4 -4.99435 | ACTTAATATTATTTA TACT TTC AGTA TTTTTAGTTATTAAG CLI_3257 3435380 - 3434457 - | hypothetical protein CLI_3258 3436397 - 3435528 - | putative phage tail protein TERM 4944 3436372 - 3436331 - G 72 -6.7 -4.08216 | gap 1, opp_overlap 3436336 3436344 3436370, overlap 3436336 CTATTTTTTCCAAAA CAAAAGGACGAG-AGTTACT TAA AGTTACTTCTTGTCCTTTAG AATTTCTATATATTA TERM 4945 3436367 - 3436336 - G 76 -5.2 -5.07652 | gap 1, opp_overlap 3436336 3436344, overlap 3436331 TTTTCCAAAACAAAA GGACGAG-AGTTACT TAA AGTTACTTCTTGTCC TTTAGAATTTCTATA TERM 4946 3436336 - 3436367 + g 71 -7.4 -3.75418 | gap 1, opp_overlap 3436336 3436331, overlap 3436344 TTTTCCAAAACAAAA GGACGAG-AGTTACT TAA AGTTACTTCTTGTCC TTTAGAATTTCTATA CLI_3259 3441894 - 3436414 - | TP901 family phage tail tape measure protein TERM 4947 3438952 - 3438973 + g 75 -4.5 -5.06223 | TTGTTCTACTTCAGA TGCACTTAA TGTT TTAACTGCA TTTTCTTTCATTTGT TERM 4948 3440689 - 3440702 + g 72 -6.7 -4.15508 | GTTGCTTCCTATCGT TGCAG CAGC CTGCA TTTTAACCATTACTT TERM 4949 3441618 - 3441629 + g 71 -5.8 -4.42639 | TTTTTAGTTGTTCTT GTGC CTCT GCAC TTTTACTTAAAGTAT TERM 4950 3441948 - 3441925 - R 100 -7.5 -5.45802 | opp_overlap 3441927 CTTGCAAAATAAAAA GAGCCTAGA AATTAA TCTAAGCTC TATAACCAACTAATC CLI_3260 3442076 - 3441948 - | hypothetical protein TERM 4951 3442163 - 3442123 - R 70 -7.6 -3.43132 | opp_overlap 3442123 3442124, overlap 3442122 3442124 AAATCTAAAATAAAT TCTTGTGGAGTAAGAGAA CTACC TTCTCCTTCTCCACTAGC TAGTTTTTTATTTTA TERM 4952 3442162 - 3442124 - R 83 -11.1 -2.64253 | opp_overlap 3442124 3442123, overlap 3442123 3442122 AATCTAAAATAAATT CTTGTGGAGTAAGAGAA CTACC TTCTCCTTCTCCACTAG CTAGTTTTTTATTTT TERM 4953 3442124 - 3442162 + r 72 -8.9 -2.73203 | opp_overlap 3442123 3442122 3442124, overlap 3442123 AATCTAAAATAAATT CTTGTGGAGTAAGAGAA CTACC TTCTCCTTCTCCACTAG CTAGTTTTTTATTTT CLI_3261 3442450 - 3442163 - | hypothetical protein TERM 4954 3442497 - 3442477 - R 82 -9 -4.05026 | opp_overlap 3442477 CCTAAATTTAAATAA GCAAGAGC ATTAA GCTCCTGC TTCTACTGGTTTCTT CLI_3262 3443067 - 3442486 - | phi13 family phage major tail protein CLI_3263 3443414 - 3443067 - | hypothetical protein CLI_3264 3443794 - 3443411 - | HK97 family phage protein CLI_3265 3444113 - 3443787 - | putative phage head-tail adaptor CLI_3266 3444423 - 3444094 - | QlrG family phage protein TERM 4955 3444450 - 3444429 - R 76 -5.9 -4.87786 | opp_overlap 3444429 TTAAGTCCATAAAAA TAACACCTC CTCT AAGGTGTCA ATATTGCTGTTATTA CLI_3267 3444595 - 3444440 - | hypothetical protein CLI_3268 3445742 - 3444615 - | putative phage capsid protein CLI_3269 3446535 - 3445735 - | putative Clp protease CLI_3270 3447764 - 3446571 - | HK97 family phage portal protein TERM 4956 3447087 - 3447077 - G 70 -4 -4.87665 | opp_overlap 3447077 CCTGATCCACAAAAA GAAT TCC ATTC TTCTGAAACTTTCCT CLI_3271 3449477 - 3447780 - | putative phage terminase, large subunit CLI_3272 3449947 - 3449474 - | P27 family phage terminase small subunit TERM 4957 3450160 - 3450179 + r 76 -9.3 -2.78032 | overlap 3450159 TTAGGGAATTTTTCA CGAGGGA ATCTAC TCCCTCG GTCTTTTAGAAGAAC CLI_3273 3450678 - 3450205 - | hypothetical protein CLI_3274 3450971 - 3450678 - | hypothetical protein CLI_3275 3451346 - 3451005 - | hypothetical protein CLI_3276 3451659 - 3451384 - | hypothetical protein CLI_3277 3452358 - 3451813 - | phage integrase family site specific recombinase CLI_3278 3452593 - 3452360 - | hypothetical protein TERM 4958 3452634 - 3452597 - R 100 -12.3 -3.86524 | opp_overlap 3452602, overlap 3452602 ACATCCTTTCATAAA TAAAAGCACCTAAGG CTTATACT CCTTAAGTGCTTTTA GTACATACACAATAT TERM 4959 3452629 - 3452602 - R 90 -7.8 -4.99043 | opp_overlap 3452602, overlap 3452597 CTTTCATAAATAAAA GCACCTAAGG CTTATACT CCTTAAGTGC TTTTAGTACATACAC TERM 4960 3452647 - 3452657 + r 80 -2.6 -6.09196 | opp_overlap 3452647 TTAGTACATACACAA TATA TTA TATA TTTTTTTATTTTCGC CLI_3279 3453188 - 3452802 - | hypothetical protein CLI_3280 3453345 - 3453178 - | hypothetical protein CLI_3281 3453491 - 3453348 - | hypothetical protein CLI_3282 3453664 - 3453506 - | hypothetical protein CLI_3283 3454804 - 3453755 - | hypothetical protein CLI_3284 3454989 - 3454843 - | hypothetical protein CLI_3285 3455193 - 3455023 - | hypothetical protein CLI_3286 3455411 - 3455226 - | hypothetical protein CLI_3287 3455721 - 3455449 - | hypothetical protein CLI_3288 3455976 - 3455755 - | hypothetical protein CLI_3289 3456374 - 3456012 - | hypothetical protein TERM 4961 3456117 - 3456127 + g 72 -2.6 -5.4505 | opp_overlap 3456117 ATCAGTAATTTTAAA TAAT CCT ATTA TTTTTTCTTGGCAAA TERM 4962 3456304 - 3456327 + g 71 -7.6 -3.52764 | gap 1, opp_overlap 3456303 TCAGATAATACATAC TTACCACATGT AGT ACATG-GGTAA TCTCTTTTGTATGGT CLI_3290 3457423 - 3456407 - | hypothetical protein CLI_3291 3457910 - 3457452 - | hypothetical protein CLI_3292 3458699 - 3457956 - | hypothetical protein CLI_3293 3459023 - 3458736 - | hypothetical protein CLI_3294 3459529 - 3459014 - | hypothetical protein CLI_3295 3460074 - 3459532 - | hypothetical protein TERM 4963 3459763 - 3459781 + g 86 -7.4 -5.33866 | CTTATTAAACTCTTC CTCTGCAT TAT AAGCAGAG TTTTTTATAGCTTTC CLI_3296 3460911 - 3460075 - | hypothetical protein TERM 4964 3461015 - 3461030 + r 77 -6.8 -4.61687 | TTATTTAAGTTTTTT GGTGGC TTAG GCCATC TCTTTTTTTATTTCA CLI_3297 3461242 - 3461021 - | hypothetical protein CLI_3298 3461440 - 3461258 - | hypothetical protein CLI_3299 3461504 - 3461710 + | hypothetical protein TERM 4965 3461729 - 3461753 + T 86 -9.3 -3.99985 | ATAATTTTTTTAGTT GCTCTTGAGCT AGT ACCTCAGGAGC TTATTTAACTATCTC CLI_3300 3462008 - 3461754 - | hypothetical protein TERM 4966 3461802 - 3461824 + g 78 -9.4 -3.36631 | overlap 3461801 ATTTAAAGCAATTCT TTTTAAATCA TTA TGATTTAAAA TACTTTTGTTCTTTT CLI_3301 3462778 - 3462020 - | hypothetical protein CLI_3302 3462978 - 3462835 - | hypothetical protein TERM 4967 3463022 - 3463000 - R 71 -8.6 -3.02263 | opp_overlap 3463000 3462999 ACACCTTTTTTAATA CTTACTTCAT TAT ATGAAATAAG GTTTGTACTAGTTTT CLI_3303 3463130 - 3462981 - | hypothetical protein CLI_3304 3463344 - 3463111 - | DNA-binding protein CLI_3306 3463554 - 3463919 + | putative transcriptional regulator TERM 4968 3463924 - 3463913 - T 86 -5.8 -5.77571 | opp_overlap 3463913 3463907 ATTAAAAAAGAAAAA CAGC TAAT GCTG TTTAACTTTAATTTT CLI_3305 3464035 - 3463916 - | hypothetical protein TERM 4969 3463987 - 3464003 + g 85 -4.5 -5.52347 | GTGAATATATATTTT TCATATG GGC TATATGA TTTTTTAGTTTTATT TERM 4970 3464477 - 3464459 - g 78 -10.2 -2.63479 | AACAGTTTGATACTA GCACCCCC ATG GGGCGTGC AATGATGAATATAGC CLI_3307 3464125 - 3465762 + | resolvase family protein CLI_3308 3465783 - 3466598 + | ABC transporter substrate-binding protein CLI_3309 3471237 - 3466945 - | putative CoA-substrate-specific enzyme activase TERM 4971 3468873 - 3468883 + g 81 -2.6 -5.75478 | ATAGGAATGGATTCA TATA TTT TATA TTTTTTTCTCTAATT TERM 4972 3469808 - 3469782 - G 85 -7.4 -4.91712 | TGGAATTCATAAAAA CAGTACATCTAG ATC CTAAATCTACTG GATCCTTAGAGGTTA TERM 4973 3470951 - 3470961 + g 75 -4 -5.2112 | ATAGCTACATCAGTA TTTG TAG CAAA TTTTTTAATAGTATT CLI_3310 3471559 - 3472320 + | ABC transporter, ATP-binding protein CLI_3311 3472317 - 3473120 + | ABC transporter, permease protein TERM 4974 3473140 - 3473175 + F 100 -8.6 -5.81412 | overlap 3473144 AATTTTTTATTTTAA TAGGTCTATTTAGAAA TTTT TTTCTGAATAGATTTA TTTTTTTTGCATAAA TERM 4975 3473144 - 3473171 + F 100 -9.4 -5.33985 | overlap 3473140 TTTTATTTTAATAGG TCTATTTAGAAA TTTT TTTCTGAATAGA TTTATTTTTTTTGCA CLI_3312 3473264 - 3473611 + | TPR domain-containing protein TERM 4976 3473699 - 3473730 + T 100 -11.8 -4.6902 | opp_overlap 3473699 TTAATCTATATAAAA TGCTAGTAACTTTT ATAT AAAAGCTACTAGCA TTTTTACCATTCTCC TERM 4977 3473730 - 3473699 - T 100 -14 -4.57474 | opp_overlap 3473699 TTAATCTATATAAAA TGCTAGTAACTTTT ATAT AAAAGCTACTAGCA TTTTTACCATTCTCC CLI_3313 3474909 - 3473734 - | transglutaminase domain-containing protein TERM 4978 3474197 - 3474215 + g 90 -4.6 -5.71983 | TCTTCTAATGTTACC CCATTATA ATA TACAATGG TTTTTTTATCCTTAA recX 3475869 - 3474934 - | recombination regulator RecX TERM 4979 3475304 - 3475286 - G 74 -9 -3.37464 | opp_overlap 3475286 3475296 TCAGCAATGTTAGAA TTATATCC CCT GGATATAA TGTATGGCCATATTT TERM 4980 3475286 - 3475304 + g 72 -9 -2.89935 | opp_overlap 3475286, overlap 3475296 TCAGCAATGTTAGAA TTATATCC CCT GGATATAA TGTATGGCCATATTT CLI_3315 3477120 - 3475891 - | M16 family peptidase TERM 4981 3476616 - 3476633 + g 73 -5.7 -4.63172 | TTATAAATTTATCTC TAGTAAA AGAT TTTACTA TTTTCTCATTTCCTA TERM 4982 3477492 - 3477512 + G 82 -4 -5.53288 | TACTACCTTTTCTCT CTTCCTAT TCCAT ATGGGGAG TTTTTTTGGGTTGCA CLI_3316 3477341 - 3477844 + | hypothetical protein CLI_3317 3477882 - 3478469 + | putative flavin reductase TERM 4983 3478806 - 3478781 - g 73 -5.5 -4.67697 | TTGGAAAATAATAAA CAAAGGCACTT GGGG AAGTAGCTTTG GTGGTAGATGGATGG CLI_3318 3478527 - 3479222 + | ErfK/YbiS/YcfS/YnhG family protein TERM 4984 3479231 - 3479202 - T 77 -8.7 -3.44801 | gap 1, opp_overlap 3479203, overlap 3479200 3479199 3479203 TTTTATAAAAAACTA GGGGTAGAACTTAT AGA ATAAGCTCC-CCCC TTTATATAAATTTGT TERM 4985 3479231 - 3479203 - T 72 -8.9 -2.66157 | opp_overlap 3479203, overlap 3479202 3479200 3479199 TTTATAAAAAACTAG GGGTAGAACTTAT AGA ATAAGCTCCCCCC TTTATATAAATTTGT CLI_3319 3480132 - 3479257 - | hypothetical protein CLI_3320 3480452 - 3480174 - | hypothetical protein TERM 4986 3480521 - 3480575 + r 87 -9.9 -3.34652 | overlap 3480519 3480522 AACTTGGTAATTTGT TTTA-TATTTCTTCGTTATCCTATCTT TAA AAGATAGGATAACGAA-AAATGCTAAC TGTATTATTTAGACA TERM 4987 3480522 - 3480574 + r 91 -13.4 -2.60309 | overlap 3480521 3480519 ACTTGGTAATTTGTT TTA-TATTTCTTCGTTATCCTATCTT TAA AAGATAGGATAACGAA-AAATGCTAA CTGTATTATTTAGAC proC 3481386 - 3480580 - | pyrroline-5-carboxylate reductase TERM 4988 3481415 - 3481460 + r 73 -3.5 -5.48028 | gap 1, overlap 3481416 TAATAAAAATTTGTT ACTAGGAGAAAGACTTAA-ATT ATA AATCTTAGTTCCTTCTCCTAGC TTTTATTTTTCTTTA TERM 4989 3481416 - 3481459 + r 71 -7 -3.85156 | gap 1, overlap 3481415 AATAAAAATTTGTTA CTAGGAGAAAGACTTAA-ATT ATA AATCTTAGTTCCTTCTCCTAG CTTTTATTTTTCTTT CLI_3322 3483861 - 3481498 - | formate acetyltransferase TERM 4990 3482159 - 3482177 + g 74 -9 -3.21925 | GTTATATTTTTTTCA TCAAATAC TTG GTATTTGA TTGCTGATAAACTGT TERM 4991 3483629 - 3483651 + g 71 -7.6 -3.39286 | AATTCTGGATAAGTT GGTGTAGCTG CTG CAGCTTCCCC TCTTTCACCTACTAT CLI_3323 3484770 - 3483868 - | glycyl-radical enzyme activating family protein CLI_3324 3485389 - 3484820 - | DNA-binding protein TERM 4992 3485225 - 3485249 + g 75 -9.5 -2.9176 | CAAACTTACATCCAG TTCTTTAGCTA TTT TAGTTAAAGAA TCTATAGCTACAGTT TERM 4993 3485465 - 3485486 + r 73 -6.7 -4.3586 | opp_overlap 3485465, overlap 3485483 ATACTTAACTTTAAA TATATGTGT ATAC GCACATATA TTTTAGTATAGGTAA TERM 4994 3485974 - 3485999 + r 72 -4.9 -4.97461 | opp_overlap 3485974 ATTGGAACAAAAAAA CTATTGATA ACTTGATA TATCAATAG TTTTTGCTATTTATT TERM 4995 3485999 - 3485974 - R 84 -4.9 -5.80364 | opp_overlap 3485974 ATTGGAACAAAAAAA CTATTGATA ACTTGATA TATCAATAG TTTTTGCTATTTATT TERM 4996 3486014 - 3486024 + r 70 -4 -5.1971 | GTTTTTGCTATTTAT TTGT TTT ACAA TTTTTAATTTTTCAT CLI_3325 3486756 - 3486028 - | BRCT domain-containing protein CLI_3326 3487134 - 3486793 - | hypothetical protein CLI_3327 3488882 - 3487146 - | von Willebrand factor type A domain-containing protein CLI_3328 3490233 - 3488905 - | AAA family ATPase TERM 4997 3490713 - 3490683 - H 79 -7.2 -4.63542 | opp_overlap 3490683, overlap 3490673 TATAATTTGTAAAAA CAAAAAAATTAA TCTAAAT TTAATTTTTTTG TTGTCGTAGAAAAAT CLI_3329 3490905 - 3491981 + | hypothetical protein CLI_3330 3492050 - 3493135 + | hypothetical protein TERM 4998 3493145 - 3493169 + T 100 -11.6 -5.52347 | opp_overlap 3493149 AAATAATTTTTTGGA TGAACACCTA ATTAA TAGGTGTTCA TTTTTTAATTTTATT CLI_3331 3493514 - 3493314 - | iron-sulfur cluster-binding protein CLI_3332 3493751 - 3494644 + | hypothetical protein CLI_3333 3494647 - 3495744 + | putative R-2-hydroxyglutaryl-CoA dehydratase subunit CLI_3334 3495725 - 3496699 + | putative CoA-substrate-specific enzyme activase TERM 4999 3496718 - 3496746 + T 100 -8.9 -5.32599 | opp_overlap 3496718 ATGAAATAAAAAAAA CAACAGAGCACTT AAT AATGGCTCTGTTG TTTTTATATTTTATC TERM 5000 3496746 - 3496718 - T 100 -8.9 -6.25578 | opp_overlap 3496718 ATGAAATAAAAAAAA CAACAGAGCACTT AAT AATGGCTCTGTTG TTTTTATATTTTATC CLI_3335 3498393 - 3496765 - | sigma-54 dependent transcriptional regulator TERM 5001 3498208 - 3498220 + g 77 -4.9 -5.20606 | TATACTTATTTTACT TTCTA CCT TAGAA TTTTTATTAATCTTT TERM 5002 3498659 - 3498689 + r 100 -8.5 -5.75478 | opp_overlap 3498659 ATGGGAATAAAAAAA GAATGTGATATAT TATTT ATATTTCACATTC TTTTTTTATATGATT TERM 5003 3498689 - 3498659 - R 100 -8.5 -5.80364 | opp_overlap 3498659 ATGGGAATAAAAAAA GAATGTGATATAT TATTT ATATTTCACATTC TTTTTTTATATGATT CLI_3336 3499759 - 3498752 - | electron transfer flavoprotein, alpha subunit/FixB family protein CLI_3337 3500551 - 3499772 - | electron transfer flavoprotein, beta subunit/FixA family protein bcd 3501703 - 3500564 - | butyryl-CoA dehydrogenase TERM 5004 3501023 - 3501035 + g 72 -4.9 -4.87133 | AAATCCTTTTCCTTC TTTAC CAA GTAAA TTTTCTTTCGGAACT TERM 5005 3501319 - 3501345 + g 71 -2.3 -5.43866 | CATCTGTACCAGCAT TAGGTTCTGTT AAACC AAAAGCACCTA TTTTTTTACCGCTTA TERM 5006 3501664 - 3501674 + g 74 -5.4 -4.9645 | ATTCCATTAGCATCT GCTT AAC AAGC TTTTGTTCTTGTGAT TERM 5007 3501785 - 3501835 + r 91 -10.3 -3.77639 | gap 1, opp_overlap 3501792, overlap 3501790 3501792 AAAAAATTTGTATTA TATTTA-ATTGCATCATTAAAATA AATC TATTTTAATGATGCAATGTTAATG TTATCTTATAAATTG TERM 5008 3501790 - 3501829 + r 100 -14 -3.47232 | opp_overlap 3501792, overlap 3501785 3501792 ATTTGTATTATATTT AATTGCATCATTAAAATA AATC TATTTTAATGATGCAATG TTAATGTTATCTTAT TERM 5009 3501792 - 3501827 + r 100 -16.6 -3.29445 | opp_overlap 3501792, overlap 3501790 3501785 TTGTATTATATTTAA TTGCATCATTAAAATA AATC TATTTTAATGATGCAA TGTTAATGTTATCTT TERM 5010 3501827 - 3501792 - R 100 -16.6 -3.14468 | opp_overlap 3501792 3501790 3501785 TTGTATTATATTTAA TTGCATCATTAAAATA AATC TATTTTAATGATGCAA TGTTAATGTTATCTT CLI_3339 3503075 - 3501897 - | acetyl-CoA acetyltransferase TERM 5011 3502169 - 3502180 + g 78 -3 -5.64006 | overlap 3502175 CTATTTTTAGGTTGG CTTT TTCT AAAG TTTTTTTAGTTGCAT TERM 5012 3502360 - 3502379 + g 70 -5 -4.54727 | overlap 3502369 CCAGCTGTAACTGTT CCATCTTT TTTA AAAGCTGG TTTTAATTTAGAAAG hbd 3503930 - 3503100 - | 3-hydroxybutyryl-CoA dehydrogenase TERM 5013 3503795 - 3503806 + g 78 -4.4 -5.47964 | TTCCTTTTTTAACTT GCTT ATCA AAGC TTTTTATTATTTTAT CLI_3341 3504732 - 3503950 - | 3-hydroxybutyryl-CoA dehydratase TERM 5014 3505135 - 3505106 - R 100 -8.1 -5.60993 | opp_overlap 3505106, overlap 3505087 TTTTGTATAAAAAAA TAACTTAGAATAA TATA TCATCCTAAGTTA TTTTAAAAATTTTTA CLI_3342 3505366 - 3505148 - | hypothetical protein CLI_3343 3506507 - 3505410 - | GIY-YIG domain-containing protein TERM 5015 3506314 - 3506331 + g 74 -2.1 -5.61689 | GTGTCTGTACATATA TATTGAA AATC TTTAATA TTTTTTATTAGTTTT TERM 5016 3506718 - 3506671 - R 84 -8.7 -4.28432 | opp_overlap 3506670 3506715 AAGTTCAATTTAAAA TGTACCCTATAGTGTAGAC TTTTTTAATT ATCTACTCTATAGAGTACA CCTTGTAATTTACTA CLI_3344 3508075 - 3506783 - | xanthine/uracil permease family protein TERM 5017 3507177 - 3507165 - G 74 -6.3 -4.37886 | opp_overlap 3507165 GCACTCTCTACAAAA GTACT AAC AGTAC TTGTTCCTAAGCAAG CLI_3345 3509374 - 3508478 - | HDIG domain-containing protein TERM 5018 3509432 - 3509408 - R 80 -6.6 -5.02476 | opp_overlap 3509388 3509408 3509405 3509401, overlap 3509412 ATATTTTGTAAAAAA TAAAGGTAAT ATAAA ATCACCTTTA TTCTTTATCTTATTT CLI_3346 3509594 - 3509442 - | hypothetical protein TERM 5019 3509483 - 3509512 + g 70 -5.1 -4.55798 | ATTTTTTAGATTCAT TAGAAACTCCCAA CTCA TTTGAAGTTTCTA TTTTCATTTCAGCTA TERM 5020 3509714 - 3509732 + r 78 -6 -5.08178 | opp_overlap 3509714, overlap 3509708 AAAATGAACAAAAAA CCGTAC ATTTTTA GTACGG TTTTTATCTCTATAT TERM 5021 3509732 - 3509714 - R 85 -6 -5.61689 | opp_overlap 3509714 3509708 AAAATGAACAAAAAA CCGTAC ATTTTTA GTACGG TTTTTATCTCTATAT lgt 3510746 - 3509982 - | prolipoprotein diacylglyceryl transferase TERM 5022 3510128 - 3510117 - G 71 -3 -5.24129 | CCCCTCTATAAAAAA TCTT CCTA AAGA ATATAATCCTATGTA TERM 5023 3510870 - 3510825 - R 100 -18.3 -3.66921 | opp_overlap 3510827 3510835, overlap 3510835 3510855 AATTTTAATTTTAAA GTTTAATAAATATTAATTTTA ATCA TAAAATTAATATTTATTAAAC TCTAGCCCTATTATC TERM 5024 3510835 - 3510860 + r 78 -7.9 -4.19678 | opp_overlap 3510835 3510825 3510855, overlap 3510827 TTAAAGTTTAATAAA TATTAATTTTA ATCA TAAAATTAATA TTTATTAAACTCTAG TERM 5025 3510860 - 3510835 - R 78 -7.9 -4.23104 | opp_overlap 3510827 3510835, overlap 3510825 3510855 TTAAAGTTTAATAAA TATTAATTTTA ATCA TAAAATTAATA TTTATTAAACTCTAG CLI_3348 3511419 - 3510955 - | phosphodiesterase CLI_3349 3511827 - 3511462 - | hypothetical protein TERM 5026 3512420 - 3512405 - g 70 -6.2 -4.07687 | ATGTCTGTTTTAAAA TGCAAA CAAA TTTGCA AAGATATTAAAACAG TERM 5027 3512503 - 3512493 - g 70 -4 -4.85195 | opp_overlap 3512493 AAAAGAAGTTAAAAA TAGA TTA TCTA GTTATGGATGCAAAT CLI_3350 3511958 - 3512707 + | glycerophosphoryl diester phosphodiesterase TERM 5028 3512880 - 3512841 - T 73 -8.8 -2.90615 | gap 1, opp_overlap 3512848, overlap 3512844 3512845 3512847 ATTTCTCCTAAAGGA TAAC-GACTTCTAAGGAGT AAA ACTCCTAAGAATTCTGTTA ATAAGCTTTAGTGGA TERM 5029 3512875 - 3512845 - T 79 -9.8 -2.75769 | opp_overlap 3512848, overlap 3512844 3512841 3512847 CTCCTAAAGGATAAC GACTTCTAAGGAGT AAA ACTCCTAAGAATTC TGTTAATAAGCTTTA TERM 5030 3512848 - 3512872 + T 90 -10.1 -3.71552 | opp_overlap 3512847 3512845 3512844 3512841 CTAAAGGATAACGAC TTCTAAGGAGT AAA ACTCCTAAGAA TTCTGTTAATAAGCT TERM 5031 3512916 - 3512885 - T 95 -12.4 -3.62522 | GAATTCTGTTAATAA GCTTTAGTGGAAGT AAAG ACTCCCTCTAAAGC CAAGAACTCTGTTTA CLI_3351 3515047 - 3513041 - | methyl-accepting chemotaxis protein TERM 5032 3513307 - 3513327 + g 79 -7.7 -4.2717 | opp_overlap 3513307 TAGATTTTGTTATAA TATCAAAGG ATT TCTTTGATA TTTTCATAGCATCAT TERM 5033 3515226 - 3515192 - R 100 -11.8 -6.09196 | opp_overlap 3515192 3515197 TCTAAAACAAAAAAA TAAAAGAGTTACTA AAATTAA TAGTAACTCTTTTA TGATTATATTTAAAT TERM 5034 3515192 - 3515226 + r 90 -11.8 -2.99459 | opp_overlap 3515192, overlap 3515197 TCTAAAACAAAAAAA TAAAAGAGTTACTA AAATTAA TAGTAACTCTTTTA TGATTATATTTAAAT TERM 5035 3515197 - 3515221 + r 79 -7.3 -4.60977 | opp_overlap 3515192, overlap 3515192 AACAAAAAAATAAAA GAGTTACTA AAATTAA TAGTAACTC TTTTATGATTATATT CLI_3352 3515788 - 3515243 - | rubredoxin/rubrerythrin TERM 5036 3516413 - 3516443 + r 72 -5 -5.03713 | opp_overlap 3516413, overlap 3516437 CTATGTTTTAATAAA TTATTTAAATATGA TTT TTATATTGAAATAA TTTTCTTTAATTCTT pflA 3517128 - 3516430 - | pyruvate formate-lyase activating enzyme TERM 5037 3517197 - 3517151 - R 100 -14.8 -3.39895 | opp_overlap 3517147 3517159, overlap 3517154 3517157 CTCCTTATCAAGTAA TTATAATACTCAGATGAAGAAT ATT ACTCTCCACCTGAGTATTAGAA AAACTTATCTAGGGC TERM 5038 3517194 - 3517154 - R 100 -16.5 -2.85896 | opp_overlap 3517147 3517159, overlap 3517151 3517157 CTTATCAAGTAATTA TAATACTCAGATGAAGAAT ATT ACTCTCCACCTGAGTATTA GAAAAACTTATCTAG TERM 5039 3517191 - 3517157 - R 100 -13.8 -3.57128 | opp_overlap 3517147 3517159, overlap 3517154 3517151 ATCAAGTAATTATAA TACTCAGATGAAGAAT ATT ACTCTCCACCTGAGTA TTAGAAAAACTTATC pfl 3519536 - 3517308 - | formate acetyltransferase 1 TERM 5040 3519870 - 3519843 - R 90 -6.2 -5.88197 | overlap 3519835 TTAAAGATAAAAAAA CCCCCTGGAC TTTTTATT GCCCAGGCGG TCGACATTCTAACTT CLI_3355 3520299 - 3520048 - | hypothetical protein TERM 5041 3520395 - 3520379 - R 75 -9.5 -2.72511 | opp_overlap 3520363 3520386, overlap 3520378 CGCACTCTGTGAAAG CGATTTG CAC CAAATCG AAGATTTGGACTCTC TERM 5042 3520514 - 3520475 - R 100 -17.6 -2.90615 | gap 1, opp_overlap 3520478 3520479 3520482 3520511, overlap 3520478 3520479 ATTTCCCCTAAAGGA TAAC-GAATTCTAAGGAGT AAA ACTCCTTAGAATTCTGTTA ATAAGCTTTAGAGGG TERM 5043 3520510 - 3520478 - R 100 -15.1 -3.60151 | opp_overlap 3520478 3520479 3520482, overlap 3520475 3520479 TCCCCTAAAGGATAA CGAATTCTAAGGAGT AAA ACTCCTTAGAATTCT GTTAATAAGCTTTAG TERM 5044 3520478 - 3520511 + r 100 -14.9 -3.2048 | gap 1, opp_overlap 3520478 3520475 3520479, overlap 3520479 3520482 TCCCCTAAAGGATAA C-GAATTCTAAGGAGT AAA ACTCCTTAGAATTCTG TTAATAAGCTTTAGA TERM 5045 3520479 - 3520509 + r 100 -18.6 -3.16288 | opp_overlap 3520479 3520478 3520475, overlap 3520478 3520482 CCCCTAAAGGATAAC GAATTCTAAGGAGT AAA ACTCCTTAGAATTC TGTTAATAAGCTTTA TERM 5046 3520509 - 3520479 - R 100 -18.6 -2.75769 | opp_overlap 3520478 3520479 3520482, overlap 3520478 3520475 CCCCTAAAGGATAAC GAATTCTAAGGAGT AAA ACTCCTTAGAATTC TGTTAATAAGCTTTA TERM 5047 3520482 - 3520506 + r 100 -14.5 -3.71552 | opp_overlap 3520479 3520478 3520475, overlap 3520479 3520478 CTAAAGGATAACGAA TTCTAAGGAGT AAA ACTCCTTAGAA TTCTGTTAATAAGCT TERM 5048 3520550 - 3520519 - R 100 -16 -3.62522 | opp_overlap 3520511, overlap 3520538 GAATTCTGTTAATAA GCTTTAGAGGGAGT AAAA ACTCCCTCTGAAGC CAAGAACTCTGTTTA TERM 5049 3520650 - 3520628 - R 86 -4.3 -5.87688 | opp_overlap 3520628 3520633 ATAACCTAAAAAAAA TAAAATTAG GTTCT CTAATTCTA TTTACGAGAAATAAA CLI_3356 3521296 - 3520727 - | ribosomal 5S rRNA E-loop binding protein Ctc/L25/TL5 CLI_3357 3522077 - 3521463 - | putative lipoprotein TERM 5050 3522238 - 3522254 + H 82 -2.4 -6.19302 | opp_overlap 3522238 TTTATTTAACGATAA TTATTT TTGAC AAATAA TTTTTTTTATTATAT CLI_3358 3522303 - 3522731 + | FUR family transcriptional regulator TERM 5051 3522783 - 3522728 - T 82 -8.1 -4.45485 | gap 1, opp_overlap 3522736 3522739 3522742, overlap 3522736 3522739 3522742 ATCAGATTCAGAAAA TTAGTAAT-TAATAAGCACTTAAATC TATCT AATTTAAGTGCTTATTATATTGCTAC CTTAATTAGTAATGC TERM 5052 3522736 - 3522774 + T 100 -13.6 -3.17586 | opp_overlap 3522728 3522736 3522739 3522742, overlap 3522739 3522742 CAGAAAATTAGTAAT TAATAAGCACTTAAAT CTATCTA ATTTAAGTGCTTATTA TATTGCTACCTTAAT TERM 5053 3522774 - 3522736 - T 100 -14.3 -2.63109 | opp_overlap 3522736 3522739 3522742, overlap 3522728 3522739 3522742 CAGAAAATTAGTAAT TAATAAGCACTTAAATC TATCT AATTTAAGTGCTTATTA TATTGCTACCTTAAT TERM 5054 3522771 - 3522739 - T 95 -11.6 -3.44825 | opp_overlap 3522739 3522736 3522742, overlap 3522736 3522728 3522742 AAAATTAGTAATTAA TAAGCACTTAAATC TATCT AATTTAAGTGCTTA TTATATTGCTACCTT TERM 5055 3522739 - 3522771 + T 95 -10.9 -3.724 | opp_overlap 3522736 3522728 3522739 3522742, overlap 3522736 3522742 AAAATTAGTAATTAA TAAGCACTTAAAT CTATCTA ATTTAAGTGCTTA TTATATTGCTACCTT TERM 5056 3522742 - 3522768 + T 78 -8.2 -3.98627 | opp_overlap 3522739 3522736 3522728 3522742, overlap 3522739 3522736 ATTAGTAATTAATAA GCACTTAAAT CTATCTA ATTTAAGTGC TTATTATATTGCTAC TERM 5057 3522768 - 3522742 - T 81 -8.9 -3.84246 | opp_overlap 3522742 3522739 3522736, overlap 3522739 3522736 3522728 ATTAGTAATTAATAA GCACTTAAATC TATCT AATTTAAGTGC TTATTATATTGCTAC CLI_3359 3524035 - 3522800 - | extracellular solute-binding protein TERM 5058 3523142 - 3523154 + g 70 -6.3 -4.1958 | opp_overlap 3523142 3523141 TATAGAATTTATAAT TACAG GTT CTGTA TTATTTAATTTATCT CLI_3360 3524136 - 3525071 + | hypothetical protein TERM 5059 3525099 - 3525081 - T 100 -14.6 -5.67529 | AATTAAAAACAAAAA GGGACCGT TTT ACGGTCCC AAGGGGGATGGGGGG TERM 5060 3525123 - 3525148 + T 75 -9.3 -2.52795 | opp_overlap 3525128, overlap 3525128 TGGGGGGTTGTTGCA TCAAATATATA AATT TATATATTTGA TGCATTAGGGAGATT CLI_3361 3526187 - 3525231 - | hypothetical protein TERM 5061 3526388 - 3526365 - R 83 -6.2 -5.44721 | gap 1 ATTATGCTAAAAAAA TAGAAAGAACT TTA AGT-CTTTCTA TAAAAAATAGTATTT CLI_3362 3526821 - 3526402 - | hypothetical protein TERM 5062 3526850 - 3526868 + r 81 -10.3 -2.6563 | opp_overlap 3526853, overlap 3526847 3526847 TTAAATTAATGGCAA GGAGGGT AATGA ACCCTCC TAAGTTATTAGCAGC CLI_3363 3527121 - 3526876 - | hypothetical protein TERM 5063 3526940 - 3526924 - G 72 -6.7 -4.13244 | opp_overlap 3526924 3526926, overlap 3526921 GCATAAGAAGAATAA TACTATT ATA AATAGTA TACTATTGTCTATTT CLI_3364 3527607 - 3527173 - | hypothetical protein TERM 5064 3527739 - 3527783 + r 93 -13.3 -2.78384 | opp_overlap 3527739 3527744, overlap 3527744 3527753 AAAAATTCCAAAAAA TAAAAGCAATAAAATATCCAT AAA ATAGATATTTTATTGCTTTCA TCTAATACACAAGCA TERM 5065 3527783 - 3527739 - R 100 -17.7 -5.16472 | opp_overlap 3527739 3527744 3527753, overlap 3527744 AAAAATTCCAAAAAA TAAAAGCAATAAAATATCCAT AAA ATAGATATTTTATTGCTTTCA TCTAATACACAAGCA TERM 5066 3527744 - 3527778 + r 100 -13.2 -3.86202 | opp_overlap 3527744 3527739, overlap 3527739 3527753 TTCCAAAAAATAAAA GCAATAAAATATCCAT AAA ATAGATATTTTATTGC TTTCATCTAATACAC TERM 5067 3527778 - 3527744 - R 100 -15.4 -5.42198 | opp_overlap 3527739 3527744 3527753, overlap 3527739 TTCCAAAAAATAAAA GCAATAAAATATCCAT AAA ATAGATATTTTATTGC TTTCATCTAATACAC TERM 5068 3527934 - 3527910 - R 82 -10.1 -2.95207 | opp_overlap 3527910, overlap 3527909 CTAAAGGATAACAAC TTCTAAGGAGT GAA ACTCCTAAGAA TTCTGTTAATAAGCT TERM 5069 3527910 - 3527934 + r 90 -10.1 -3.71552 | opp_overlap 3527910 3527909 CTAAAGGATAACAAC TTCTAAGGAGT GAA ACTCCTAAGAA TTCTGTTAATAAGCT TERM 5070 3527978 - 3527947 - R 100 -18.2 -3.62522 | opp_overlap 3527939 GAATTCTGTTAATAA GCTTCAGAGGGAGT AAAA ACTCCCTCTGAAAC CAAGAACTCTGTTTA CLI_3365 3528732 - 3528007 - | CAAX amino terminal protease family protein TERM 5071 3528701 - 3528673 - G 72 -4.1 -5.0538 | TTTTATTCTAAAAAA TAATATTATAG GGGGTAT CCATAATATTA TAAATGTAAGAATGC CLI_3366 3529340 - 3528756 - | GTPase EngB TERM 5072 3528999 - 3529009 + g 82 -4 -5.54192 | opp_overlap 3528999 ATGCCTACTATCAAC TAGT AAA ACTA TTTTTTTAAGTTGAT lon 3531676 - 3529355 - | ATP-dependent protease La TERM 5073 3530636 - 3530646 + g 74 -6.8 -4.34771 | opp_overlap 3530635 TAAACATAATATAGG CCCT TTT AGGG TTTTACTGACTTTTC lonB 3533493 - 3531814 - | ATP-dependent protease LonB TERM 5074 3533591 - 3533617 + r 100 -15.4 -4.6856 | opp_overlap 3533591 TATAATAGTAAAAAA TAACACCAAGAT AAA ATCTTGGTGTTA TTTTTACGCTGTTTC TERM 5075 3533617 - 3533591 - R 100 -15.4 -5.30189 | opp_overlap 3533591 TATAATAGTAAAAAA TAACACCAAGAT AAA ATCTTGGTGTTA TTTTTACGCTGTTTC clpX 3534910 - 3533621 - | ATP-dependent protease ATP-binding subunit clpP-2 3535514 - 3534930 - | ATP-dependent Clp protease, proteolytic subunit ClpP TERM 5076 3535615 - 3535582 - R 75 -6.8 -4.37527 | opp_overlap 3535584 3535586, overlap 3535583 3535584 3535586 TTATAATTATTAAAA CTTAGTTGCCAGAA AATATA TCCTGGCAACTATA TCATTATCTATTATT TERM 5077 3535614 - 3535583 - R 72 -8.1 -3.21793 | opp_overlap 3535584 3535586, overlap 3535582 3535584 3535586 TATAATTATTAAAAC TTAGTTGCCAGAA AATATA TCCTGGCAACTAT ATCATTATCTATTAT TERM 5078 3535613 - 3535584 - R 85 -11.6 -2.52353 | opp_overlap 3535584 3535586, overlap 3535583 3535582 3535586 ATAATTATTAAAACT TAGTTGCCAGAA AATATA TCCTGGCAACTA TATCATTATCTATTA TERM 5079 3535584 - 3535613 + r 78 -9.4 -3.01979 | opp_overlap 3535583 3535582 3535584 3535586, overlap 3535586 ATAATTATTAAAACT TAGTTGCCAGAA AATATA TCCTGGCAACTA TATCATTATCTATTA TERM 5080 3535611 - 3535586 - R 80 -9.8 -2.78897 | opp_overlap 3535584 3535586, overlap 3535584 3535583 3535582 AATTATTAAAACTTA GTTGCCAGAA AATATA TCCTGGCAAC TATATCATTATCTAT tig 3536932 - 3535640 - | trigger factor TERM 5081 3535776 - 3535789 + g 74 -2.4 -5.54338 | TGACCATATTGTTTA GCTA CTTCCA TAGC TTTTTCTTTTAATTC CLI_3372 3537895 - 3537110 - | AP endonuclease CLI_3373 3538814 - 3538002 - | hypothetical protein TERM 5082 3538258 - 3538274 + g 76 -9.5 -3.06837 | overlap 3538257 3538260 AAATAATCTTGCTTT GATGCTA ATA TAGCATC CTTTTGAAAAGTTGT TERM 5083 3538680 - 3538703 + g 71 -7.6 -3.44284 | opp_overlap 3538688, overlap 3538678 ACTATTTTTTATTTT TTTACCAATA CCAT TGTTGGTAAA TATTATTACTAAAGA TERM 5084 3538938 - 3538913 - R 82 -5.7 -5.4593 | TCAAAACAATAAAAA TTAATAACTAT TTTC ATAATTATTAA AGTAAAATTAAGTTT TERM 5085 3539011 - 3538983 - R 90 -6.9 -5.79588 | TTAAAACTAAAAAAA TGTCCCAAAAT TAAATCT ATTTTGAGACA ACTCTTATTTTAAAA pyrE 3539603 - 3539028 - | orotate phosphoribosyltransferase pyrD 3540533 - 3539637 - | dihydroorotate dehydrogenase 1B TERM 5086 3540251 - 3540265 + g 81 -2.8 -5.79588 | overlap 3540242 CACCTACATTTGCAA TGGTTA CTG TATCCA TTTTTTTCATTTTAG pyrK 3541288 - 3540533 - | dihydroorotate dehydrogenase electron transfer subunit pyrF 3542272 - 3541421 - | orotidine 5'-phosphate decarboxylase pyrC 3543486 - 3542296 - | dihydroorotase, multifunctional complex type TERM 5087 3543357 - 3543329 - G 100 -12.6 -3.78022 | opp_overlap 3543327 TGCATATCTATGAAA GATGGAAGAAGA GTTAA TCCTCTTCCATC AAATATTTCACAATT pyrI 3543948 - 3543508 - | aspartate carbamoyltransferase regulatory subunit pyrB 3544873 - 3543950 - | aspartate carbamoyltransferase catalytic subunit TERM 5088 3544924 - 3544952 + r 72 -8.9 -2.68491 | opp_overlap 3544926, overlap 3544915 3544923 TTTAAAGGTATAAAA AATGCCTTCCTTT TTT AAAGGAAGGCACA ATTATACTCTAGCTT TERM 5089 3544950 - 3544926 - R 100 -15.9 -5.33866 | opp_overlap 3544915 3544924 3544923 TAAAGGTATAAAAAA TGCCTTCCTTT TTT AAAGGAAGGCA CAATTATACTCTAGC CLI_3381 3545886 - 3545128 - | putative CoA-substrate-specific enzyme activase CLI_3382 3546106 - 3545909 - | hypothetical protein TERM 5090 3546360 - 3546327 - R 77 -7.3 -4.50257 | ACAGAACATAAGAAA CCAGGAGTAGAGCTA AAAA TGGCGCCTCTCCTGG ATAAAATTTTTTAAT CLI_3383 3547725 - 3546466 - | putative R-2-hydroxyglutaryl-CoA dehydratase subunit CLI_3384 3549002 - 3547854 - | putative R-2-hydroxyglutaryl-CoA dehydratase subunit CLI_3385 3549446 - 3549114 - | hypothetical protein TERM 5091 3549559 - 3549611 + r 100 -11.4 -4.06179 | gap 1, opp_overlap 3549559 3549560 3549562 3549588, overlap 3549560 3549563 TACGTCCCTGGATAA C-GATTTCTAAGCTTCAGTGGGAGT AAAA ACTCCCTCTGAAGCCAAGAACTCTG TTTATAAATTTTGGC TERM 5092 3549610 - 3549559 - R 100 -13.8 -3.28924 | opp_overlap 3549559 3549560 3549563, overlap 3549560 3549562 3549588 TACGTCCCTGGATAA CGATTTCTAAGCTTCAGTGGGAGT AAAA ACTCCCTCTGAAGCCAAGAACTCT GTTTATAAATTTTGG TERM 5093 3549609 - 3549560 - R 100 -17.3 -2.57211 | opp_overlap 3549559 3549560 3549563, overlap 3549559 3549562 3549588 ACGTCCCTGGATAAC GATTTCTAAGCTTCAGTGGGAGT AAAA ACTCCCTCTGAAGCCAAGAACTC TGTTTATAAATTTTG TERM 5094 3549560 - 3549609 + r 100 -15.1 -3.61601 | opp_overlap 3549560 3549559 3549562 3549588, overlap 3549559 3549563 ACGTCCCTGGATAAC GATTTCTAAGCTTCAGTGGGAGT AAAA ACTCCCTCTGAAGCCAAGAACTC TGTTTATAAATTTTG TERM 5095 3549607 - 3549562 - R 100 -14.1 -2.82623 | opp_overlap 3549560 3549559 3549563, overlap 3549560 3549559 3549588 GTCCCTGGATAACGA TTTCTAAGCTTCAGTGGGAGT AAAA ACTCCCTCTGAAGCCAAGAAC TCTGTTTATAAATTT TERM 5096 3549563 - 3549606 + r 100 -15.4 -2.60913 | opp_overlap 3549562 3549560 3549559 3549588, overlap 3549560 3549559 TCCCTGGATAACGAT TTCTAAGCTTCAGTGGGAGT AAAA ACTCCCTCTGAAGCCAAGAA CTCTGTTTATAAATT CLI_3386 3550371 - 3549613 - | ABC-type nitrate/sulfonate/taurine/bicarbonate transport system ATPase component-like protein TERM 5097 3550045 - 3550058 + g 91 -5.3 -5.72254 | opp_overlap 3550045 TAACCTATCTATAGA TTCCT TTTT AGGAA TTTTTTGTTGTTTCA CLI_3389 3551674 - 3551138 - | hypothetical protein CLI_3390 3551944 - 3551726 - | hypothetical protein CLI_3391 3552666 - 3552100 - | hypothetical protein CLI_3392 3553794 - 3552694 - | putative lipoprotein TERM 5098 3552995 - 3553014 + g 72 -5 -4.71776 | overlap 3552996 GGGACTTGATAATTT TCAGCAAA TATT TTTGCTGC TTTTATTGGATGTTC TERM 5099 3552996 - 3553013 + g 73 -8.5 -3.41981 | overlap 3552995 GGACTTGATAATTTT CAGCAAA TATT TTTGCTG CTTTTATTGGATGTT TERM 5100 3553765 - 3553778 + g 85 -2.5 -5.86609 | TAAAACTAATGTACA TAATA AGCC TATTA TTTTTCTTTTTTTCA CLI_3393 3554276 - 3553812 - | putative lipoprotein CLI_3394 3555383 - 3554292 - | putative permease TERM 5101 3554779 - 3554763 - G 70 -8.1 -3.14564 | GTATTGTTGTATGAA TTCTTGT GGT ACAAGAA CTAAAAGTATTCCGG CLI_3395 3555643 - 3555383 - | hypothetical protein TERM 5102 3555433 - 3555447 + g 89 -3.6 -6.11229 | TTTCTATTATTTCTT TAGATA ACT TGTCTA TTTTTTTCTTTTCAT TERM 5103 3555756 - 3555726 - R 80 -10 -2.85874 | opp_overlap 3555727, overlap 3555723 3555731 3555755 TAAATATACGAATCA TGTAATCTATAAAT AAA ATTTATAGATTACT TTTTTATTTATAAAT TERM 5104 3555727 - 3555755 + r 100 -13.5 -5.72622 | opp_overlap 3555726 3555723 3555731 AAATATACGAATCAT GTAATCTATAAAT AAA ATTTATAGATTAC TTTTTTATTTATAAA TERM 5105 3555751 - 3555731 - R 72 -8.5 -3.14404 | opp_overlap 3555727, overlap 3555726 3555723 ATACGAATCATGTAA TCTATAAAT AAA ATTTATAGA TTACTTTTTTATTTA TERM 5106 3555801 - 3555781 - R 87 -6.2 -5.74288 | opp_overlap 3555781 ATAAATAAGAAAAAA GAGATGAT CTAAC ATCACCTC TTTAAGCTGCAACCC TERM 5107 3555983 - 3556010 + r 95 -13 -3.70571 | opp_overlap 3555983, overlap 3555990 ATGAAAATAAAAAAA TCAAGAACTTAA TACT TTAAGTTCTTGA TTTCAAATATTTATA TERM 5108 3556010 - 3555983 - R 100 -13 -6.11229 | opp_overlap 3555983 3555990 ATGAAAATAAAAAAA TCAAGAACTTAA TACT TTAAGTTCTTGA TTTCAAATATTTATA TERM 5109 3556468 - 3556482 + r 70 -7.8 -3.33261 | opp_overlap 3556478 CGAACCCCTGGCCCA CGCCTT AGA AGGGCG TTGCTCTATCCATCT TERM 5110 3556709 - 3556729 + r 95 -11.3 -3.55122 | CGTTATATTTTAATC CTTCTGAAT TCT ATTCAGAAG TTCATTTAAATGGTG TERM 5111 3557203 - 3557217 + r 70 -7.8 -3.33261 | opp_overlap 3557213 CGAACCCCTGGCCCA CGCCTT AGA AGGGCG TTGCTCTATCCATCT TERM 5112 3557445 - 3557465 + r 75 -8.4 -3.55122 | opp_overlap 3557444 3557443, overlap 3557449 CGTTACCTTTAAATC CTTCTGAA CTCTA TTCAGAAG TTCATTTAAATGGTG TERM 5113 3557850 - 3557864 + r 70 -7.8 -3.33261 | opp_overlap 3557860 CGAACCCCTGGCCCA CGCCTT AGA AGGGCG TTGCTCTATCCATCT CLI_3431 3558671 - 3558201 - | phosphodiesterase CLI_3432 3559287 - 3558688 - | putative deoxyribonucleotide triphosphate pyrophosphatase TERM 5114 3558822 - 3558812 - G 72 -5.4 -4.83243 | GGTATATAAAATAAA GGAT CAT ATCC AAATCCATCTTCACC TERM 5115 3559209 - 3559226 + g 70 -4.3 -5.00611 | TCGATAAAGCATCTA TATTAAA TTTT TTTAATA TTTCTTTTATTTCTC TERM 5116 3559927 - 3559909 - g 89 -4 -5.95539 | opp_overlap 3559909, overlap 3559917 TTTCAAAGAAAAAAA TAAAAAAT TTA ATTTTTCA AATCAATGCTTTTTA TERM 5117 3560380 - 3560366 - g 76 -3.6 -5.46276 | AATACAGATAAAAAA GAAATA AAA TATTCC TGTGATGAGTTAATA CLI_3433 3559391 - 3560764 + | hypothetical protein TERM 5118 3560757 - 3560803 + F 100 -21.4 -5.13473 | opp_overlap 3560761, overlap 3560761 CTTTATATACACTTA AAAATTAATATGAGGATATTGC AAT GCAATATCCTCATATTAATTTA TTTTTTGGATATAAT TERM 5119 3560799 - 3560761 - f 100 -22.2 -4.73448 | opp_overlap 3560757 3560761 ATATACACTTAAAAA TTAATATGAGGATATTGC AAT GCAATATCCTCATATTAA TTTATTTTTTGGATA TERM 5120 3560761 - 3560799 + F 100 -22.2 -5.0666 | opp_overlap 3560761, overlap 3560757 ATATACACTTAAAAA TTAATATGAGGATATTGC AAT GCAATATCCTCATATTAA TTTATTTTTTGGATA CLI_3434 3560877 - 3561032 + | hypothetical protein CLI_3435 3562597 - 3561035 - | solute-binding family 5 protein TERM 5121 3562515 - 3562525 + g 71 -3.2 -5.27709 | overlap 3562507 3562509 CTTATTCCCTCATCT GAGG TGA CTTC TTTGTTTTTTTCTAC TERM 5122 3562712 - 3562737 + r 70 -4.7 -4.83722 | opp_overlap 3562714, overlap 3562714 TATTTTTCATAAAAA AATCCCCACAT TTTT ATGTGAGGATC TTTTATTCTAATATT TERM 5123 3562735 - 3562714 - R 100 -9.5 -5.60993 | opp_overlap 3562712 3562714 TTTTTCATAAAAAAA TCCCCACAT TTTT ATGTGAGGA TCTTTTATTCTAATA TERM 5124 3562714 - 3562735 + r 73 -7.3 -4.02119 | opp_overlap 3562714, overlap 3562712 TTTTTCATAAAAAAA TCCCCACAT TTTT ATGTGAGGA TCTTTTATTCTAATA gatB 3564182 - 3562752 - | aspartyl/glutamyl-tRNA amidotransferase subunit B TERM 5125 3563529 - 3563508 - G 70 -8.9 -2.65993 | opp_overlap 3563490 3563512, overlap 3563512 ATCATATTCATATGA TAAAGCTTT TTCC AAAGCTTTA AAAGAATTCATATTT gatA 3565675 - 3564218 - | glutamyl-tRNA(Gln) amidotransferase, A subunit gatC 3565999 - 3565712 - | aspartyl/glutamyl-tRNA amidotransferase subunit C CLI_3439 3567345 - 3566134 - | sodium:dicarboxylate symporter family protein TERM 5126 3567363 - 3567389 + r 76 -6 -4.8622 | TACTCCCCCCTAGTT CATATGTATTTA TAT TGTATACATATG TTTTTCATTAAAACG TERM 5127 3567473 - 3567455 - R 75 -7.6 -3.86524 | opp_overlap 3567429 ATATTTTTGTACAAA TGTATTTA TAA TAAATACA CAAACATTTTATCTG TERM 5128 3567578 - 3567633 + r 90 -12.7 -2.65174 | opp_overlap 3567588, overlap 3567583 3567588 ATATATGAGTATTTA TAAATAAAAATCCTATTTAGTTA-AAT TGCC ATTATAACTAAATAGGA-TTTTATTTA TAAATTAATTATTTT TERM 5129 3567583 - 3567629 + r 95 -10.7 -3.99898 | gap 1, opp_overlap 3567588, overlap 3567578 3567588 TGAGTATTTATAAAT AAAAATCCTATTTAGTTA-AAT TGCC ATTATAACTAAATAGGATTTTA TTTATAAATTAATTA TERM 5130 3567588 - 3567624 + r 100 -10.6 -5.01553 | gap 1, opp_overlap 3567588, overlap 3567583 3567578 ATTTATAAATAAAAA TCCTATTTAGTTA-AAT TGCC ATTATAACTAAATAGGA TTTTATTTATAAATT TERM 5131 3567624 - 3567588 - R 100 -10.6 -5.38958 | gap 1, opp_overlap 3567588 3567583 3567578 ATTTATAAATAAAAA TCCTATTTAGTTA-AAT TGCC ATTATAACTAAATAGGA TTTTATTTATAAATT CLI_3440 3567997 - 3567728 - | hypothetical protein ligA 3570092 - 3568098 - | NAD-dependent DNA ligase LigA TERM 5132 3568243 - 3568229 - G 74 -7.2 -4.00782 | TTACACTACTAGAAA CTTTAG CTC CTAAAG ACTGTAATTTATCTT TERM 5133 3569931 - 3569900 - G 78 -9.6 -3.11564 | gap 1, opp_overlap 3569900, overlap 3569898 TAAATTCACCTAATA TTTTATCACCAACCC TTT GGGTTGGTGA-ATAA GGTAATGTAACTTCA TERM 5134 3569900 - 3569933 + g 78 -10.5 -2.66912 | gap 1, opp_overlap 3569900 3569898 TAAATTCACCTAATA TTTTA-TCACCAACCC TTT GGGTTGGTGAATAAGG TAATGTAACTTCAGT pcrA 3572320 - 3570104 - | ATP-dependent DNA helicase PcrA TERM 5135 3570587 - 3570599 + g 72 -6.3 -4.19817 | CAATGATTGTGTTCC TGGAA ATA TTCCA TTTTCCATACCTACC TERM 5136 3570781 - 3570768 - G 81 -8.1 -4.07885 | GATTCTCTTTCAAAA TCCGC TGCT GCGGA AACTAATTCTTTCAG TERM 5137 3572430 - 3572409 - R 100 -11.7 -4.39571 | opp_overlap 3572403 CTTATAAATTTAAAA TGTGCTAGT AAAA ACTAGCACA CAATAATTTATTCTA CLI_3443 3572746 - 3572447 - | TrpR family protein TERM 5138 3572884 - 3572853 - R 80 -3.2 -5.97979 | gap 1, opp_overlap 3572860, overlap 3572858 ATAATAATAAAAAAA TAAAACAGCCTAT TGGGGTT ATAGGCTG-CTTA CAATAAATAAAAAGG TERM 5139 3572880 - 3572858 - R 100 -7.8 -5.64328 | opp_overlap 3572860, overlap 3572853 AATAAAAAAATAAAA CAGCCTAT TGGGGTT ATAGGCTG CTTACAATAAATAAA CLI_3444 3573760 - 3573044 - | RNA pseudouridine synthase family protein TERM 5140 3573237 - 3573247 + g 70 -4 -5.00196 | CTTACTTCTGATTCC TCAT TAA ATGA TTTTATTATTTCAAG TERM 5141 3573846 - 3573814 - R 95 -10.7 -4.36554 | opp_overlap 3573820, overlap 3573820 TACCATTATAACAAA TTTAAAGGAAAGTGC AGG GCACTTTCCTTTTTA TACTCCATAATTTTT TERM 5142 3573840 - 3573820 - R 100 -14.1 -3.94868 | opp_overlap 3573820, overlap 3573814 TATAACAAATTTAAA GGAAAGTGC AGG GCACTTTCC TTTTTATACTCCATA TERM 5143 3573820 - 3573840 + r 100 -14.1 -4.9218 | opp_overlap 3573814 3573820 TATAACAAATTTAAA GGAAAGTGC AGG GCACTTTCC TTTTTATACTCCATA CLI_3445 3574539 - 3573844 - | Slt family transglycosylase CLI_3446 3576577 - 3574574 - | two component regulator CLI_3447 3576711 - 3576878 + | hypothetical protein TERM 5144 3576987 - 3576949 - T 87 -9.8 -3.32424 | opp_overlap 3576949 3576951, overlap 3576947 3576943 3576951 ACTATAGAATTAAGA TAGGATGTCTCAAAAT TAAGGCT ATTTCGAGACATCCTC TTCTTTAATTAAAAT TERM 5145 3576949 - 3576987 + T 77 -7.6 -4.08651 | opp_overlap 3576949 3576947 3576943 3576951, overlap 3576951 ACTATAGAATTAAGA TAGGATGTCTCAAAAT TAAGGCT ATTTCGAGACATCCTC TTCTTTAATTAAAAT TERM 5146 3576985 - 3576951 - T 93 -12.4 -3.22135 | opp_overlap 3576951 3576949, overlap 3576949 3576947 3576943 TATAGAATTAAGATA GGATGTCTCAAAAT TAAGGCT ATTTCGAGACATCC TCTTCTTTAATTAAA TERM 5147 3576951 - 3576985 + T 89 -10.2 -3.63298 | opp_overlap 3576949 3576947 3576943 3576951, overlap 3576949 TATAGAATTAAGATA GGATGTCTCAAAAT TAAGGCT ATTTCGAGACATCC TCTTCTTTAATTAAA CLI_3448 3577476 - 3577042 - | hypothetical protein pgi 3578839 - 3577487 - | glucose-6-phosphate isomerase TERM 5148 3578881 - 3578906 + r 77 -4.7 -5.39221 | opp_overlap 3578883, overlap 3578882 3578883 ACATTTTAATATAAA AAGCTGTTGAA GTAA TTCAACAGCCA TTTTTTCATTATTCT TERM 5149 3578882 - 3578905 + r 76 -8.2 -3.81092 | opp_overlap 3578883, overlap 3578881 3578883 CATTTTAATATAAAA AGCTGTTGAA GTAA TTCAACAGCC ATTTTTTCATTATTC TERM 5150 3578904 - 3578883 - R 100 -11.7 -5.09762 | opp_overlap 3578882 3578881 3578883 ATTTTAATATAAAAA GCTGTTGAA GTAA TTCAACAGC CATTTTTTCATTATT TERM 5151 3578883 - 3578904 + r 88 -11.7 -2.87029 | opp_overlap 3578883, overlap 3578882 3578881 ATTTTAATATAAAAA GCTGTTGAA GTAA TTCAACAGC CATTTTTTCATTATT CLI_3450 3579093 - 3578923 - | hypothetical protein TERM 5152 3578991 - 3579010 + g 70 -4.2 -4.99645 | overlap 3578993 3578995 ATTCTGGGCATCTTT GTGGTTCG TTTT CGAATCCC TTTTCTTTATAGAAT TERM 5153 3579418 - 3579430 + r 70 -3.5 -5.44119 | TAATCTCAAAATTAT TTTAT CTT ATAAA TTTTTTTCACATAAA CLI_3451 3580068 - 3579424 - | TetR family transcriptional regulator TERM 5154 3580092 - 3580104 + H 72 -6.3 -4.52703 | CTCCTAACTCATTAT TGACT CAA AGTCA TTTTCTCCTAATTTA CLI_3452 3580299 - 3580832 + | acetyltransferase TERM 5155 3580867 - 3580911 + F 100 -16.2 -2.7218 | opp_overlap 3580867 3580872 3580875, overlap 3580872 AACTAAATTTAACAA TCAAATAAGATGATTTCTGT ATTAA ACAGAAATCATCTTATTTTA ATTATATCCGTATCT TERM 5156 3580911 - 3580867 - f 100 -16.2 -3.79506 | opp_overlap 3580867 3580872, overlap 3580872 3580875 AACTAAATTTAACAA TCAAATAAGATGATTTCTGT ATTAA ACAGAAATCATCTTATTTTA ATTATATCCGTATCT TERM 5157 3580872 - 3580906 + F 100 -16.1 -4.53034 | opp_overlap 3580867 3580872 3580875, overlap 3580867 AATTTAACAATCAAA TAAGATGATTTCTGT ATTAA ACAGAAATCATCTTA TTTTAATTATATCCG TERM 5158 3580906 - 3580872 - f 100 -16.1 -4.09292 | opp_overlap 3580872 3580867, overlap 3580867 3580875 AATTTAACAATCAAA TAAGATGATTTCTGT ATTAA ACAGAAATCATCTTA TTTTAATTATATCCG TERM 5159 3580903 - 3580875 - f 100 -13.4 -4.15577 | opp_overlap 3580872 3580867, overlap 3580872 3580867 TTAACAATCAAATAA GATGATTTCTGT ATTAA ACAGAAATCATC TTATTTTAATTATAT TERM 5160 3582077 - 3582056 - g 83 -10.3 -3.43751 | overlap 3582054 GAATAATTTGAAATA TATGAAAGC AGAT GCTTTCATA GTAAATACTGGTCGT ldhA-1 3581376 - 3582380 + | D-lactate dehydrogenase ldhA-2 3583567 - 3582572 - | D-lactate dehydrogenase TERM 5161 3583003 - 3583015 + g 73 -3.5 -5.2166 | CTTCATCTAAGGATT TATAT TCA ATATA TTTTTTAGCTTCTTC TERM 5162 3583932 - 3583973 + r 89 -9.1 -4.6951 | opp_overlap 3583933 3583936 3583944, overlap 3583936 TTATAATATCGTTAA ACTATTATTAAAGTAATAT GAAG ATATTACTTTAATAATTGA TTTCTTTTCCCTAGT TERM 5163 3583972 - 3583933 - R 95 -12.6 -3.61774 | opp_overlap 3583932 3583936, overlap 3583936 3583944 TATAATATCGTTAAA CTATTATTAAAGTAATAT GAAG ATATTACTTTAATAATTG ATTTCTTTTCCCTAG TERM 5164 3583936 - 3583969 + r 95 -12.9 -3.81954 | opp_overlap 3583933 3583936 3583944, overlap 3583932 AATATCGTTAAACTA TTATTAAAGTAATAT GAAG ATATTACTTTAATAA TTGATTTCTTTTCCC TERM 5165 3583969 - 3583936 - R 91 -12.9 -2.92439 | opp_overlap 3583936 3583932, overlap 3583933 3583944 AATATCGTTAAACTA TTATTAAAGTAATAT GAAG ATATTACTTTAATAA TTGATTTCTTTTCCC TERM 5166 3584292 - 3584272 - R 76 -8.5 -3.695 | opp_overlap 3584271 3584272 3584286, overlap 3584270 GGGGAAAATGAAATA TTTATTAAG ACT CTTAATAAA ATTATATAATATTTA TERM 5167 3584396 - 3584339 - R 100 -16.9 -3.86202 | opp_overlap 3584345 3584350 3584358, overlap 3584341 3584343 3584350 3584358 CTTTATTATATCAAA TAGATATAAAATATAAAAAGCAGGCTT TTTA AAGTCTGCTTTTTATATTTTATATTCA CCTTTATTACATTCA TERM 5168 3584394 - 3584341 - R 100 -17.3 -3.51778 | opp_overlap 3584345 3584350 3584358, overlap 3584339 3584343 3584350 3584358 TTATTATATCAAATA GATATAAAATATAAAAAGCAGGCTT TTTA AAGTCTGCTTTTTATATTTTATATT CACCTTTATTACATT TERM 5169 3584392 - 3584343 - R 100 -19.9 -3.32803 | opp_overlap 3584345 3584350 3584358, overlap 3584341 3584339 3584350 3584358 ATTATATCAAATAGA TATAAAATATAAAAAGCAGGCTT TTTA AAGTCTGCTTTTTATATTTTATA TTCACCTTTATTACA TERM 5170 3584345 - 3584390 + r 100 -20.3 -3.15197 | opp_overlap 3584343 3584341 3584339 3584350 3584358, overlap 3584350 3584358 TATATCAAATAGATA TAAAATATAAAAAGCAGGCTT TTTA AAGTCTGCTTTTTATATTTTA TATTCACCTTTATTA TERM 5171 3584350 - 3584385 + r 100 -15.8 -4.6821 | opp_overlap 3584350 3584343 3584341 3584339 3584358, overlap 3584345 3584358 CAAATAGATATAAAA TATAAAAAGCAGGCTT TTTA AAGTCTGCTTTTTATA TTTTATATTCACCTT TERM 5172 3584385 - 3584350 - R 100 -13.6 -4.70534 | opp_overlap 3584345 3584350 3584358, overlap 3584343 3584341 3584339 3584358 CAAATAGATATAAAA TATAAAAAGCAGGCTT TTTA AAGTCTGCTTTTTATA TTTTATATTCACCTT TERM 5173 3584377 - 3584358 - R 87 -6.4 -5.32599 | opp_overlap 3584350 3584345 3584358, overlap 3584350 3584343 3584341 3584339 TATAAAATATAAAAA GCAGGCTT TTTA AAGTCTGC TTTTTATATTTTATA TERM 5174 3584358 - 3584377 + r 100 -8.6 -5.32599 | opp_overlap 3584358 3584350 3584343 3584341 3584339, overlap 3584350 3584345 TATAAAATATAAAAA GCAGGCTT TTTA AAGTCTGC TTTTTATATTTTATA CLI_3455 3585559 - 3584381 - | hypothetical protein TERM 5175 3585759 - 3585710 - R 100 -11.7 -4.75372 | opp_overlap 3585712 3585723 3585728, overlap 3585712 3585714 3585716 3585719 3585728 ACTATTTATTAAAAA TATATACAAGAAACAAAAGGAGG AAAA CCTCATTTTGTTTCTTGCAAGTA AATTAATTAACCTTC TERM 5176 3585756 - 3585712 - R 100 -11.8 -3.99327 | gap 1, opp_overlap 3585712 3585723 3585728, overlap 3585710 3585714 3585716 3585719 3585728 TATTTATTAAAAATA TATACAAGAAACAAAAGGAGG AAAA CCTCATTTTGTTTCTTGCA-A GTAAATTAATTAACC TERM 5177 3585712 - 3585757 + r 79 -9.9 -2.60423 | opp_overlap 3585712 3585710 3585714 3585716 3585719 3585728, overlap 3585723 3585728 TATTTATTAAAAATA TATACAAGAAACAAAAGGAGG AAAA CCTCATTTTGTTTCTTGCAAG TAAATTAATTAACCT TERM 5178 3585755 - 3585714 - R 100 -16.9 -3.57901 | opp_overlap 3585712 3585723 3585728, overlap 3585712 3585710 3585716 3585719 3585728 TTTATTAAAAATATA TACAAGAAACAAAAGGAGG AAAA CCTCATTTTGTTTCTTGCA AGTAAATTAATTAAC TERM 5179 3585753 - 3585716 - R 100 -17.3 -3.35531 | opp_overlap 3585712 3585723 3585728, overlap 3585714 3585712 3585710 3585719 3585728 TATTAAAAATATATA CAAGAAACAAAAGGAGG AAAA CCTCATTTTGTTTCTTG CAAGTAAATTAATTA TERM 5180 3585750 - 3585719 - R 100 -13.2 -3.78699 | opp_overlap 3585712 3585723 3585728, overlap 3585716 3585714 3585712 3585710 3585728 TAAAAATATATACAA GAAACAAAAGGAGG AAAA CCTCATTTTGTTTC TTGCAAGTAAATTAA TERM 5181 3585723 - 3585746 + r 79 -8.2 -4.16842 | opp_overlap 3585719 3585716 3585714 3585712 3585710 3585728, overlap 3585712 3585728 AATATATACAAGAAA CAAAAGGAGG AAAA CCTCATTTTG TTTCTTGCAAGTAAA CLI_3456 3586971 - 3585775 - | electron transfer flavoprotein, alpha subunit/FixB family protein CLI_3457 3587783 - 3586989 - | electron transfer flavoprotein, beta subunit/FixA family protein CLI_3458 3588929 - 3587796 - | acyl-CoA dehydrogenase family protein TERM 5182 3589105 - 3589144 + r 70 -4.4 -5.00138 | opp_overlap 3589115, overlap 3589108 CTTTTATTAAAGTGT TTCTGAAAAAGCTTGAAT TGCA GTTCTAGCTTGTTCATAA TTTTTCATTTGCATA fldC 3590220 - 3589096 - | R-phenyllactate dehydratase, C subunit fldB 3591445 - 3590222 - | R-phenyllactate dehydratase, B subunit TERM 5183 3591314 - 3591334 + g 74 -5.4 -4.89393 | TATTTCTTGTGGGAA GTTGGATG CACAC CAACCAAC TTTTTCTCCCCTTTC fldI 3592244 - 3591450 - | R-phenyllactate dehydratase activator fldA 3593482 - 3592244 - | E-cinnamoyl-CoA:R-phenyllactate CoA transferase CLI_3463 3595168 - 3593537 - | AMP-binding enzyme TERM 5184 3594183 - 3594201 + g 81 -4.7 -5.39721 | TGTCCATATGCAATC TGAATAT CCCTT ATATTCA TTTTTTCTATAATGC TERM 5185 3595336 - 3595377 + r 100 -11.4 -5.10004 | gap 1, opp_overlap 3595342, overlap 3595342 AATAGAACGAATAAA TTA-AAATTCCAGTAAAAA ATTCA TTTTTACTGGAATTTCTAA TTTTTACTTATTTTT TERM 5186 3595370 - 3595342 - R 100 -12 -4.68846 | opp_overlap 3595336 3595342 ACGAATAAATTAAAA TTCCAGTAAAAA ATTCA TTTTTACTGGAA TTTCTAATTTTTACT TERM 5187 3595342 - 3595370 + r 100 -12 -4.27774 | opp_overlap 3595342, overlap 3595336 ACGAATAAATTAAAA TTCCAGTAAAAA ATTCA TTTTTACTGGAA TTTCTAATTTTTACT TERM 5188 3595469 - 3595479 + r 79 -4 -5.72616 | overlap 3595464 AGATTCCATCTTATG TTCA ACA TGAA TTTTTTTGTATAAAT TERM 5189 3595658 - 3595672 + r 77 -5 -5.33985 | AAAAGAGTTTTCATG TCCTAA GCT TTGGGA TTTATTTTTTTTCCC CLI_3464 3596956 - 3595634 - | branched-chain amino acid transport system II carrier protein TERM 5190 3597327 - 3597380 + r 73 -8.7 -2.87294 | gap 2, opp_overlap 3597327, overlap 3597329 ATTATTACAAAAAAA TACAAAGTGCTTTC-A-ATTCACTT TTATAC AAGTAAATATTGAAAGCACTTTGTA TATGATCTAAATATT TERM 5191 3597380 - 3597327 - R 100 -10.9 -5.67967 | gap 2, opp_overlap 3597327 3597329 ATTATTACAAAAAAA TACAAAGTGCTTTC-A-ATTCACTT TTATAC AAGTAAATATTGAAAGCACTTTGTA TATGATCTAAATATT guaA 3598947 - 3597415 - | bifunctional GMP synthase/glutamine amidotransferase protein guaB 3600414 - 3598960 - | inositol-5-monophosphate dehydrogenase TERM 5192 3599852 - 3599874 + g 75 -4.3 -5.32599 | opp_overlap 3599852 AGTCCACGTAAATTA TTATCTTTA TCGAC TAAAGGTAA TTTTTCTATTTTATG TERM 5193 3601589 - 3601574 - g 80 -6.2 -4.86133 | TATAGATATGAAAAA TCTTTG GAAA CAAAGA GATAATCATTTTTAA CLI_3467 3600855 - 3601604 + | PP-loop family protein TERM 5194 3601595 - 3601616 + T 70 -7.5 -3.42482 | opp_overlap 3601595, overlap 3601593 GAAACAAAGAGATAA TCATTTTTA ATAA TAAAAATGA TATTATATTAACTAC TERM 5195 3601616 - 3601595 - T 75 -7.5 -3.85969 | opp_overlap 3601595 3601593 GAAACAAAGAGATAA TCATTTTTA ATAA TAAAAATGA TATTATATTAACTAC TERM 5196 3601685 - 3601628 - T 90 -10.4 -3.31537 | opp_overlap 3601631 3601632 3601643, overlap 3601631 3601643 ATGATATTATATTAA CTACAAAAATAAAAATAAGAAACTCT ATATAA AGAGTCTCTTATTTTTATTTTCATTA ATACATTCCATCCAT TERM 5197 3601682 - 3601631 - T 100 -14.3 -2.82786 | opp_overlap 3601631 3601632 3601643, overlap 3601628 3601643 ATATTATATTAACTA CAAAAATAAAAATAAGAAACTCT ATATAA AGAGTCTCTTATTTTTATTTTCA TTAATACATTCCATC TERM 5198 3601632 - 3601681 + T 82 -11.2 -2.53112 | opp_overlap 3601631 3601628 3601643, overlap 3601631 3601643 TATTATATTAACTAC AAAAATAAAAATAAGAAACTCT ATATAA AGAGTCTCTTATTTTTATTTTC ATTAATACATTCCAT TERM 5199 3601670 - 3601643 - T 100 -7.9 -5.69262 | opp_overlap 3601632 3601631 3601643, overlap 3601631 3601628 CTACAAAAATAAAAA TAAGAAACTCT ATATAA AGAGTCTCTTA TTTTTATTTTCATTA TERM 5200 3601643 - 3601670 + T 82 -5.7 -5.54338 | opp_overlap 3601643 3601631 3601628, overlap 3601632 3601631 CTACAAAAATAAAAA TAAGAAACTCT ATATAA AGAGTCTCTTA TTTTTATTTTCATTA groL 3603308 - 3601683 - | chaperonin GroEL TERM 5201 3601967 - 3601979 + g 70 -4.1 -4.97957 | CTATTTGTCTTACTG GTTCT TCT AGAGC TTTTCTTATTATATC TERM 5202 3602564 - 3602576 + g 73 -3.5 -5.2166 | CTTCTATGTCTTCAC TTATT ATT AATAA TTTTTTACCTTGTTG groES 3603625 - 3603338 - | chaperonin, 10 kDa TERM 5203 3604411 - 3604421 + G 81 -2.6 -5.74122 | CAAAGGTTTTACCTT TTTT CAT AAAA TTTTTTTCTCTAATG CLI_3471 3603941 - 3604585 + | hypothetical protein TERM 5204 3604595 - 3604570 - T 76 -6.3 -4.83615 | CATGTTGTATAAAAA TATGAGAAAAT TATA ATTTCCCCATA TTTTCCCCTATTTTT CLI_3470 3605314 - 3604580 - | hypothetical protein TERM 5205 3605728 - 3605676 - R 100 -11.1 -5.42862 | opp_overlap 3605680, overlap 3605680 ATACTTTTAAAAAAA TAAATATAGCTATAAAAATAATTTA AAA TACTTTATTTTTATAGCTATATTTT AACTAAAACTACTTT TERM 5206 3605680 - 3605724 + r 100 -11.9 -4.18494 | opp_overlap 3605676 3605680 TTTTAAAAAAATAAA TATAGCTATAAAAATAATTTA AAA TACTTTATTTTTATAGCTATA TTTTAACTAAAACTA TERM 5207 3605724 - 3605680 - R 100 -11.9 -5.20328 | opp_overlap 3605680, overlap 3605676 TTTTAAAAAAATAAA TATAGCTATAAAAATAATTTA AAA TACTTTATTTTTATAGCTATA TTTTAACTAAAACTA CLI_3472 3607260 - 3605767 - | [Fe] hydrogenase TERM 5208 3607340 - 3607317 - R 71 -8.4 -2.94912 | opp_overlap 3607321, overlap 3607313 3607319 3607321 TTTGTAATTTATACA TATATTTTAC ATAT GTAAAATATA TAAAAAACTTAAAAT CLI_3473 3608350 - 3607433 - | putative 8-oxoguanine DNA glycosylase TERM 5209 3608449 - 3608418 - R 100 -16.2 -4.69559 | opp_overlap 3608418 3608421 AAATTTGAAAATAAA TAAGCTGTACTTTA AATA TAAAGTACAGCTTA TAGGTTATAACTAAT TERM 5210 3608418 - 3608449 + r 100 -16.2 -2.60808 | opp_overlap 3608418, overlap 3608421 AAATTTGAAAATAAA TAAGCTGTACTTTA AATA TAAAGTACAGCTTA TAGGTTATAACTAAT TERM 5211 3608421 - 3608446 + r 100 -13.5 -3.45321 | opp_overlap 3608418, overlap 3608418 TTTGAAAATAAATAA GCTGTACTTTA AATA TAAAGTACAGC TTATAGGTTATAACT gltA-2 3609882 - 3608500 - | putative oxidoreductase CLI_3475 3610772 - 3609882 - | ferredoxin--NADP(+) reductase subunit alpha CLI_3476 3611635 - 3611003 - | redox-sensing transcriptional repressor Rex CLI_3477 3611835 - 3613757 + | putative drug resistance ABC transporter, ATP-binding protein CLI_3478 3614862 - 3614098 - | LytTr family DNA-binding response regulator CLI_3479 3616497 - 3614863 - | sensor histidine kinase TERM 5212 3616558 - 3616530 - H 75 -7.8 -4.00782 | opp_overlap 3616520 3616533, overlap 3616520 3616533 3616556 TTACATTATTATAAA TAATTTATTAAA TATTC TTTAATAAATTA TACAATAAATAAATA cstA 3616740 - 3618158 + | carbon starvation protein CstA TERM 5213 3618202 - 3618167 - T 100 -13.6 -4.9934 | opp_overlap 3618167 AGAATAGTATAAAAA GAATGTCTCAAAAATA AATT TAATTTTGAGACATTC TTTTTTATTATTCAA TERM 5214 3618167 - 3618202 + T 100 -13.6 -5.64873 | opp_overlap 3618167 AGAATAGTATAAAAA GAATGTCTCAAAAATA AATT TAATTTTGAGACATTC TTTTTTATTATTCAA CLI_3481 3621137 - 3618210 - | putative peptidase TERM 5215 3618380 - 3618394 + g 85 -7.2 -4.86001 | overlap 3618378 CTCTTTCCCTTTGCC TATCCT CAT AGGATA TTTTTCTCAAATAAT TERM 5216 3621477 - 3621498 + r 100 -8.7 -6.5058 | opp_overlap 3621477 TTCCCATAGTAAAAA GCACCGCTT CCCC AAGCAGTGC TTTTTTTTTATTTAT TERM 5217 3621498 - 3621477 - R 100 -10.9 -4.8048 | opp_overlap 3621477 TTCCCATAGTAAAAA GCACCGCTT CCCC AAGCAGTGC TTTTTTTTTATTTAT TERM 5218 3621634 - 3621610 - R 82 -10.1 -2.95207 | opp_overlap 3621610, overlap 3621609 CTAAAGGATAACAAC TTCTAAGGAGT AAA ACTCCTAAGAA TTTTGTTAATAAGCT TERM 5219 3621610 - 3621634 + r 100 -10.1 -4.71828 | opp_overlap 3621610 3621609 CTAAAGGATAACAAC TTCTAAGGAGT AAA ACTCCTAAGAA TTTTGTTAATAAGCT TERM 5220 3621678 - 3621647 - R 100 -16 -3.62522 | opp_overlap 3621639 GAATTTTGTTAATAA GCTTCAGAGGGAGT AAAA ACTCTCTCTGAAGC CAAGAACTCTGTTTA pyc 3625133 - 3621699 - | pyruvate carboxylase TERM 5221 3624736 - 3624749 + g 71 -4.5 -4.84761 | TGAACTCCAGGTATA GTAGG TACC CCTGC TTTTTCTGCAACTAT TERM 5222 3625370 - 3625348 - R 73 -8 -3.74475 | opp_overlap 3625348 3625351, overlap 3625351 ATAAACCTAATATAA TAATATAATA ATT TATTATATTA TTCAATGTTATAGTA CLI_3483 3626615 - 3625593 - | O-sialoglycoprotein endopeptidase CLI_3484 3626839 - 3627462 + | endodeoxyribonuclease RusA family protein CLI_3485 3627698 - 3627829 + | hypothetical protein CLI_3486 3629095 - 3627839 - | pyridine nucleotide-disulfide oxidoreductase TERM 5223 3629302 - 3629328 + r 100 -15.3 -3.71848 | opp_overlap 3629302 TTATGCACATGAAAA GGCCAGTAATC TTTAC GATTACTGGCC TTCTTAATGGCAGGG TERM 5224 3629328 - 3629302 - R 100 -15.3 -4.3586 | opp_overlap 3629302 TTATGCACATGAAAA GGCCAGTAATC TTTAC GATTACTGGCC TTCTTAATGGCAGGG TERM 5225 3629601 - 3629582 - R 78 -6.5 -4.78512 | opp_overlap 3629581 3629582 AAAAATAAATTAAAA TAGAGGT ACTGTA ACCTCTA CTTTTTTAAAAATAT CLI_3489 3629993 - 3629607 - | hypothetical protein CLI_3490 3630946 - 3630056 - | hypothetical protein CLI_3491 3631870 - 3630962 - | manganese/zinc/iron chelate ABC transporter substrate-binding protein TERM 5226 3632175 - 3632161 - g 71 -7.2 -3.79482 | opp_overlap 3632163 AATAGTATAATAGAA GATGTT ACT AACATC GATTACTCAAAGCAC CLI_3492 3632068 - 3633309 + | HDIG domain-containing protein CLI_3493 3633447 - 3633905 + | hypothetical protein CLI_3494 3633902 - 3634615 + | glycoprotease family protein rimI 3634608 - 3635066 + | ribosomal-protein-alanine acetyltransferase tyrS-2 3636647 - 3635424 - | tyrosyl-tRNA synthetase TERM 5227 3635780 - 3635764 - G 81 -8.1 -4.20696 | opp_overlap 3635760 3635764 TTAGTAACTTCAAAA GCTAAAA CCT TTTTAGC TTCATTTATTTCTGC TERM 5228 3635764 - 3635780 + g 77 -8.1 -3.79164 | opp_overlap 3635764, overlap 3635760 TTAGTAACTTCAAAA GCTAAAA CCT TTTTAGC TTCATTTATTTCTGC TERM 5229 3636560 - 3636550 - G 72 -4 -5.01546 | opp_overlap 3636550 AAACCTATATAAAAA GAAA TTT TTTC TTTACCTAAAAGTTC TERM 5230 3636814 - 3636778 - R 100 -12.6 -4.08767 | opp_overlap 3636775 3636778 3636783, overlap 3636783 GTTATTTTTGCAAAA TTAAAGCTATTGAAGA TCCCC TCATCAATAGCTTTAA TACTTATTATATTAA TERM 5231 3636778 - 3636814 + r 93 -12.6 -3.03429 | opp_overlap 3636778 3636783, overlap 3636775 3636783 GTTATTTTTGCAAAA TTAAAGCTATTGAAGA TCCCC TCATCAATAGCTTTAA TACTTATTATATTAA TERM 5232 3636809 - 3636783 - R 80 -8.1 -4.19735 | opp_overlap 3636783 3636778 3636775, overlap 3636778 TTTTGCAAAATTAAA GCTATTGAAGA TCCCC TCATCAATAGC TTTAATACTTATTAT TERM 5233 3636783 - 3636809 + r 78 -8.1 -3.89734 | opp_overlap 3636778 3636783, overlap 3636778 3636775 TTTTGCAAAATTAAA GCTATTGAAGA TCCCC TCATCAATAGC TTTAATACTTATTAT CLI_3497 3637287 - 3636880 - | hypothetical protein CLI_3498 3638580 - 3637423 - | putative ATP-binding protein TERM 5234 3637789 - 3637811 + g 100 -12.2 -3.01261 | opp_overlap 3637786 3637789 GTCTATAGGATATGA TCTTGGTAAA ATA TTTACCAAGA TATCTCTAGACTTAT TERM 5235 3637811 - 3637789 - G 100 -12.2 -2.68434 | opp_overlap 3637789, overlap 3637786 GTCTATAGGATATGA TCTTGGTAAA ATA TTTACCAAGA TATCTCTAGACTTAT TERM 5236 3638695 - 3638738 + r 100 -13.4 -4.43309 | opp_overlap 3638703 3638706, overlap 3638696 3638703 TATTTTGAAAACAAT TCGTAAAATAAGGAAGTTGC GAAC GCAACTCCCTTATTTTATGC TTTTCATTAGACTTG TERM 5237 3638696 - 3638737 + r 100 -16.9 -3.25262 | opp_overlap 3638703 3638706, overlap 3638695 3638703 ATTTTGAAAACAATT CGTAAAATAAGGAAGTTGC GAAC GCAACTCCCTTATTTTATG CTTTTCATTAGACTT TERM 5238 3638703 - 3638730 + r 100 -11.4 -4.68539 | opp_overlap 3638703 3638706, overlap 3638696 3638695 AAACAATTCGTAAAA TAAGGAAGTTGC GAAC GCAACTCCCTTA TTTTATGCTTTTCAT TERM 5239 3638730 - 3638703 - R 100 -13.6 -4.17523 | opp_overlap 3638703 3638696 3638695, overlap 3638706 AAACAATTCGTAAAA TAAGGAAGTTGC GAAC GCAACTCCCTTA TTTTATGCTTTTCAT TERM 5240 3638727 - 3638706 - R 100 -10.9 -4.19577 | opp_overlap 3638703 3638696 3638695, overlap 3638703 CAATTCGTAAAATAA GGAAGTTGC GAAC GCAACTCCC TTATTTTATGCTTTT CLI_3499 3639291 - 3638728 - | hypothetical protein TERM 5241 3639315 - 3639339 + r 85 -8.1 -4.72373 | opp_overlap 3639314 3639317, overlap 3639331 CCCCTCCTTAAAATT TACTTTATATA TAG TATATGAAGTA TTTATATTTTTTTAA CLI_3500 3639534 - 3639373 - | hypothetical protein TERM 5242 3639642 - 3639617 - H 74 -9.1 -3.08778 | opp_overlap 3639617, overlap 3639615 3639611 AAATAATTATATATA TTGCAGTTGTT ATTA ATCAACTGCAA TTTTTAATATGAATA TERM 5243 3639617 - 3639642 + H 93 -9.1 -4.81551 | opp_overlap 3639617 3639615 3639611 AAATAATTATATATA TTGCAGTTGTT ATTA ATCAACTGCAA TTTTTAATATGAATA TERM 5244 3639735 - 3639749 + H 90 -5.8 -5.91981 | opp_overlap 3639735 ATATTATATAATTTA TTAATG AAA CATTAA TTTTTTTTAAATTTT TERM 5245 3640485 - 3640500 + G 70 -4 -4.99056 | overlap 3640487 ATCCATGCATACATC TATAGC TTTT GCTATG TTTTTGGTTGTGTTA CLI_3501 3639790 - 3640782 + | PAP2 family protein TERM 5246 3640829 - 3640790 - T 100 -11 -4.31085 | opp_overlap 3640795 3640825, overlap 3640795 TATATTAATCTAAAA CAAAAGAAATGAGGCTTA AATT TAAGTCTCATTTCTTTTT ATTATTTAAAAATAT TERM 5247 3640824 - 3640795 - T 100 -10.9 -5.13343 | opp_overlap 3640795, overlap 3640790 TAATCTAAAACAAAA GAAATGAGGCTTA AATT TAAGTCTCATTTC TTTTTATTATTTAAA TERM 5248 3640795 - 3640824 + T 100 -13.1 -5.38549 | opp_overlap 3640795 3640790 TAATCTAAAACAAAA GAAATGAGGCTTA AATT TAAGTCTCATTTC TTTTTATTATTTAAA prfC 3642460 - 3640871 - | peptide chain release factor 3 TERM 5249 3641128 - 3641116 - G 70 -6.3 -4.16943 | TTCTATATTCTAAAA CTTCA AAC TGAAG AACACCTACTACTCC CLI_3503 3642965 - 3643771 + | HAD family hydrolase TERM 5250 3643826 - 3643804 - T 90 -6.4 -5.8096 | opp_overlap 3643804 TATAAAAAATAAAAA GTTTTCATAA ATA TAATGAAAAC TTTTTATTTTTATAA TERM 5251 3643804 - 3643826 + T 90 -6.4 -5.69262 | opp_overlap 3643804 TATAAAAAATAAAAA GTTTTCATAA ATA TAATGAAAAC TTTTTATTTTTATAA trpS 3644888 - 3643890 - | tryptophanyl-tRNA synthetase TERM 5252 3644307 - 3644323 + g 89 -9.5 -4.21812 | AGACATTTTTTTAGT TGGATCT TGA AGATCCA TTATTTTAGCTCCAG TERM 5253 3644955 - 3644934 - R 100 -11.7 -5.82281 | AAATATATAAAAAAA CCCTATAAC AAAA GTTATAGGG CGAATTATCGCGGTA CLI_3505 3645204 - 3645067 - | hypothetical protein TERM 5254 3645375 - 3645410 + r 95 -10.8 -4.09805 | gap 1, opp_overlap 3645371 3645380, overlap 3645380 TTTACAGAAAATATG TAAAACCCTATTT-ATC TAT GATTAAATAGGGTTTTG TTTAATTGTTAATAA TERM 5255 3645380 - 3645405 + r 91 -8.5 -5.03713 | gap 1, opp_overlap 3645371 3645380, overlap 3645375 AGAAAATATGTAAAA CCCTATTT-ATC TAT GATTAAATAGGG TTTTGTTTAATTGTT TERM 5256 3645405 - 3645380 - R 80 -8.5 -4.36485 | gap 1, opp_overlap 3645380 3645375, overlap 3645371 AGAAAATATGTAAAA CCCTATTT-ATC TAT GATTAAATAGGG TTTTGTTTAATTGTT CLI_3506 3645875 - 3645501 - | desulfoferrodoxin TERM 5257 3646085 - 3646070 - g 71 -3.3 -5.33866 | TAAATGGATAAAAAA CCTTA TCTTCC TAAGG AAAGAGACTTTTTGG CLI_3507 3646058 - 3646252 + | hypothetical protein TERM 5258 3646355 - 3646401 + T 79 -9 -3.83006 | opp_overlap 3646345 3646355 3646360, overlap 3646360 3646380 AACAAGTCTTATAAA TAAAACCCTATTTAGTTGCAAA TTT TATTTAACTAAATAGGGTTTTC TTGTTAGTTAAATAT TERM 5259 3646401 - 3646355 - T 71 -7.1 -3.90729 | gap 2, opp_overlap 3646355 3646360 3646380, overlap 3646345 3646360 AACAAGTCTTATAAA TAAAACCCTATTTAGTTGCAAAT TTT ATTT--AACTAAATAGGGTTTTC TTGTTAGTTAAATAT TERM 5260 3646360 - 3646396 + T 100 -8.9 -4.95167 | opp_overlap 3646360 3646355, overlap 3646355 3646380 GTCTTATAAATAAAA CCCTATTTAGTTGCAAA TTT TATTTAACTAAATAGGG TTTTCTTGTTAGTTA TERM 5261 3646396 - 3646360 - T 83 -7 -4.99043 | gap 2, opp_overlap 3646355 3646360 3646380, overlap 3646355 GTCTTATAAATAAAA CCCTATTTAGTTGCAAAT TTT ATTT--AACTAAATAGGG TTTTCTTGTTAGTTA cgs 3655123 - 3646475 - | cyclic beta 1-2 glucan synthetase TERM 5262 3655324 - 3655290 - R 100 -6.7 -5.99154 | opp_overlap 3655290 CATTAAATAAAAAAA TCTTATTGAGTTA GTTCAAATT CAACTCAATAAGA TTTTTTATTTATCAT TERM 5263 3655290 - 3655324 + r 100 -7.5 -5.73978 | gap 1, opp_overlap 3655290 CATTAAATAAAAAAA TCTTATTGAGTT-AGT TCAA ATTCAACTCAATAAGA TTTTTTATTTATCAT lysA 3656674 - 3655388 - | diaminopimelate decarboxilase lysC 3657892 - 3656690 - | aspartokinase II TERM 5264 3657986 - 3658017 + r 100 -13.2 -3.68351 | opp_overlap 3657986, overlap 3657989 TATAAAAATAAAAAA TAATGCAACAAAGG AACA CCTTTGCTGCATTA TTTCAATAATACAAA TERM 5265 3658017 - 3657986 - R 100 -15.4 -5.98675 | opp_overlap 3657986 3657989 TATAAAAATAAAAAA TAATGCAACAAAGG AACA CCTTTGCTGCATTA TTTCAATAATACAAA TERM 5266 3657989 - 3658014 + r 95 -10.5 -3.97674 | opp_overlap 3657986, overlap 3657986 AAAAATAAAAAATAA TGCAACAAAGG AACA CCTTTGCTGCA TTATTTCAATAATAC CLI_3511 3659586 - 3658288 - | putative aminopeptidase 2 TERM 5267 3659407 - 3659395 - G 82 -6.3 -5.24129 | CTCCCCTATAAAAAA TGCTA TTA TAGCA GAATGATTTTTAGTA CLI_3512 3659735 - 3660913 + | cation efflux family protein CLI_3513 3661050 - 3662141 + | hypothetical protein TERM 5268 3662253 - 3662307 + T 100 -23.4 -5.28166 | opp_overlap 3662253 TTTCACAAGAATAAA GAACTGCTAATTCCTAAGAGTTTA ATTTTTA TAAACCCTTAGGAATTAGCAGTTC TTTTTATTAATTTTA TERM 5269 3662307 - 3662253 - T 100 -25.6 -4.51812 | opp_overlap 3662253 TTTCACAAGAATAAA GAACTGCTAATTCCTAAGAGTTTA ATTTTTA TAAACCCTTAGGAATTAGCAGTTC TTTTTATTAATTTTA TERM 5270 3662385 - 3662419 + T 74 -8.8 -3.08294 | TAGTCCCCATTATTA GTAAAAAGTTATCCAC ACT GTTTATAACTTTTTAC CTTCTTTGTGTACAA CLI_3514 3664535 - 3662406 - | putative helicase ftsH-1 3666532 - 3664556 - | ATP-dependent metalloprotease FtsH TERM 5271 3666240 - 3666253 + g 81 -3.9 -5.54894 | CCACCATATTTCACC TTAGA ATCA TCTAA TTTTTTTACTAAATT TERM 5272 3666735 - 3666680 - R 100 -18.4 -3.63515 | opp_overlap 3666687, overlap 3666687 TGTTATTTGGAATAA TCTTAAATTTATTATTAAATATTTGT TACG AAAAATATTTAATAATAAATTTAAGA CAAAATTATGAATAT TERM 5273 3666728 - 3666687 - R 91 -10.7 -3.72051 | opp_overlap 3666687, overlap 3666680 TGGAATAATCTTAAA TTTATTATTAAATATTTGT TACG AAAAATATTTAATAATAAA TTTAAGACAAAATTA TERM 5274 3666687 - 3666728 + r 91 -10.7 -3.53761 | opp_overlap 3666680 3666687 TGGAATAATCTTAAA TTTATTATTAAATATTTGT TACG AAAAATATTTAATAATAAA TTTAAGACAAAATTA TERM 5275 3666928 - 3666885 - R 71 -6.4 -4.128 | gap 1, overlap 3666890 ATCTCTATAGATAAA TAAAAGATATGAG-CAAATAT TAT ATATTTATCTCACATCTTTTT TATAAATAACTATAA TERM 5276 3666923 - 3666890 - R 78 -6.3 -5.07523 | gap 1, overlap 3666885 TATAGATAAATAAAA GATATGAG-CAAATAT TAT ATATTTATCTCACATC TTTTTTATAAATAAC CLI_3516 3668340 - 3666949 - | dipeptidase PepV TERM 5277 3667208 - 3667222 + g 75 -5.8 -4.71401 | opp_overlap 3667207 TCAAAATATAAAGGT TTTTGA TCC TCAAAA TTTTCTACTTTTATT TERM 5278 3668492 - 3668452 - R 91 -12.9 -2.8619 | opp_overlap 3668452, overlap 3668457 TTAAAACCCACTATA TAAAAGGTATAGAAAAATC ATT GATTCCCCTATACCCTTTA ATTTTCTAATATTTA TERM 5279 3668487 - 3668457 - R 100 -10.6 -4.57755 | opp_overlap 3668452, overlap 3668452 ACCCACTATATAAAA GGTATAGAAAAATC ATT GATTCCCCTATACC CTTTAATTTTCTAAT proS 3669977 - 3668541 - | prolyl-tRNA synthetase TERM 5280 3670047 - 3670021 - R 76 -2.3 -5.95539 | gap 1 TTGTAAATAAAAAAA CTCCTAATCCCT ATAC AGGGACC-GAAG TTGTGTCGGTGGTAC TERM 5281 3670119 - 3670107 - R 70 -7.7 -3.35996 | opp_overlap 3670106 CACTTTTATTGATAA CGGAA TTT TTCCG CTGTATCCTACTTAA CLI_3518 3670643 - 3670401 - | GIY-YIG domain-containing protein CLI_3519 3671988 - 3670765 - | hypothetical protein TERM 5282 3671387 - 3671373 - G 80 -6.4 -5.00884 | ATTCCTCTGAAAAAA TAGGAG ATA CCCCTA ATAAAAGCATTATAA CLI_3520 3672962 - 3672084 - | ABC transporter, ATP-binding protein CLI_3521 3673926 - 3673120 - | hypothetical protein TERM 5283 3673403 - 3673389 - GR 73 -4.4 -5.12617 | opp_overlap 3673391 GAACCATCCAAAAAA TATTAA TCT TTAATA ATTGAATGTCTAAAC CLI_3522 3674473 - 3673901 - | sigma-70 family RNA polymerase sigma factor TERM 5284 3674811 - 3674766 - R 73 -2.7 -5.67063 | TCTATTATAAAAAAA GAACCCATAACATAGACTTTT TTAC AAATGCCCATCCTATAGATTC CCTTTTAATTTTACT CLI_3523 3676516 - 3674858 - | SulP family sulfate permease TERM 5285 3676699 - 3676685 - R 73 -2.8 -5.63517 | TTTTTAAATAAAAAA GAAAGG TCC CCTTTT CCTGAAAACCCTTCT CLI_3524 3678076 - 3676730 - | sensor histidine kinase TERM 5286 3677648 - 3677661 + g 90 -3.9 -6.28967 | opp_overlap 3677648 ATTTATTACTATATA TAAGT TATC ACTTA TTTTTTTTGTTTCTC CLI_3525 3678791 - 3678099 - | DNA-binding response regulator CLI_3526 3680264 - 3679056 - | hypothetical protein CLI_3527 3681174 - 3680269 - | bacitracin ABC transporter, ATP-binding protein TERM 5287 3680504 - 3680532 + g 86 -9.7 -3.84279 | overlap 3680507 GATATTTTTAGTCTT TCAGTATCAGAAG ATG CTTTTGACACTGA TTCTATTGCTTTTAT TERM 5288 3681289 - 3681277 - H 70 -3.5 -5.28281 | ATAAAATAAAGAAAA TATAA AGA TTATA GAACAGCATTTAAAG TERM 5289 3681658 - 3681683 + G 74 -3.3 -5.37345 | GGAATGGAGCTACTA TACCATTCCTG ATGA TAGGGATTGTA TTTTTTATAATTGGA CLI_3528 3681531 - 3681734 + | hypothetical protein TERM 5290 3681761 - 3681732 - T 90 -10.1 -3.6682 | opp_overlap 3681732 3681731, overlap 3681735 3681738 TTTTATCCATTCAAA TAGTAAGAGCTCC ATAA GGAGCTCCTAATA GCTTTTTTATTTTTC TERM 5291 3681758 - 3681735 - T 86 -11.8 -2.6462 | opp_overlap 3681732 3681731, overlap 3681732 3681738 TATCCATTCAAATAG TAAGAGCTCC ATAA GGAGCTCCTA ATAGCTTTTTTATTT TERM 5292 3681755 - 3681738 - T 93 -11.3 -3.47029 | opp_overlap 3681732 3681731, overlap 3681735 3681732 CCATTCAAATAGTAA GAGCTCC ATAA GGAGCTC CTAATAGCTTTTTTA CLI_3529 3682856 - 3681861 - | hypothetical protein TERM 5293 3682990 - 3682966 - R 88 -6.6 -5.45802 | opp_overlap 3682966, overlap 3682968 TTTTTAAAATAAAAA TCCTATGTTT TTATT AAACATAGAA TCTTTCAGTATTTGT CLI_3530 3684308 - 3683223 - | hypothetical protein TERM 5294 3684399 - 3684436 + r 77 -7.9 -4.0641 | opp_overlap 3684406, overlap 3684406 ATTTTTCATCTTTAT TATAAAACTCATCTCTA TATA TGGAGATGAGCTCTATA TTTATATAACTACAA TERM 5295 3684406 - 3684429 + r 81 -10.4 -2.5459 | opp_overlap 3684406, overlap 3684399 ATCTTTATTATAAAA CTCATCTCTA TATA TGGAGATGAG CTCTATATTTATATA TERM 5296 3684429 - 3684406 - R 82 -8.2 -4.4648 | opp_overlap 3684406 3684399 ATCTTTATTATAAAA CTCATCTCTA TATA TGGAGATGAG CTCTATATTTATATA CLI_3531 3685509 - 3684616 - | BadF/BadG/BcrA/BcrD ATPase family protein CLI_3532 3685865 - 3685569 - | PTS system lactose/cellobiose-specific family IIA subunit CLI_3533 3686415 - 3686104 - | PTS system lactose/cellobiose-specific family IIB subunit TERM 5297 3686542 - 3686521 - R 81 -5.3 -5.4505 | gap 1 GTTTGCAACAAAAAA GTGTGTATAT TTA AT-TACACAC TTACACTATTACTAA CLI_3534 3689264 - 3686535 - | sigma-54 dependent transcriptional regulator TERM 5298 3687187 - 3687206 + g 90 -7.2 -5.52079 | overlap 3687189 ATTATTAAGAATTTC TTCAAACC TTTA GGTTTGGA TTTTTCTTTTGCTAT TERM 5299 3689088 - 3689104 + g 95 -6.6 -5.72118 | opp_overlap 3689088 TAATGAGCGATATAA TACAGG CCTCC CCTGTA TTTTTTCTATTTTTT TERM 5300 3689377 - 3689335 - R 93 -9.5 -4.4874 | gap 1, opp_overlap 3689339 3689344, overlap 3689338 3689344 TGCAAAAATGGAAAA TAT-TTAAAAGCCATATGCA TTAT TGCATACGGCTTTTATTATA ACCAAATATTGTTAA TERM 5301 3689373 - 3689338 - R 91 -12.8 -2.88603 | opp_overlap 3689339 3689344, overlap 3689335 3689344 AAAAATGGAAAATAT TTAAAAGCCATATGCA TTAT TGCATACGGCTTTTAT TATAACCAAATATTG TERM 5302 3689339 - 3689372 + r 100 -14.1 -3.30007 | opp_overlap 3689338 3689335 3689344, overlap 3689344 AAAATGGAAAATATT TAAAAGCCATATGCA TTAT TGCATACGGCTTTTA TTATAACCAAATATT TERM 5303 3689344 - 3689367 + r 95 -9.6 -4.77165 | opp_overlap 3689338 3689335 3689344, overlap 3689339 GGAAAATATTTAAAA GCCATATGCA TTAT TGCATACGGC TTTTATTATAACCAA TERM 5304 3689367 - 3689344 - R 100 -11.8 -4.35581 | opp_overlap 3689344 3689339, overlap 3689338 3689335 GGAAAATATTTAAAA GCCATATGCA TTAT TGCATACGGC TTTTATTATAACCAA CLI_3535 3690681 - 3689389 - | PTS system lactose/cellobiose family IIC subunit TERM 5305 3690750 - 3690772 + r 86 -5.8 -5.72616 | ATAATAGTAATCTAT TTTAAAATGA TCG TTATTTTAAA TTTTTTTCTATAAGT CLI_3536 3692100 - 3690763 - | glycosy hydrolase family protein TERM 5306 3692435 - 3692406 - R 100 -8 -5.4492 | opp_overlap 3692406 TATATACATAAAAAA CACAGTCACATT CTATAT AATGCAACTGTG CTTTGAATACCATAA CLI_3537 3693766 - 3692453 - | putative diguanylate cyclase TERM 5307 3692614 - 3692625 + g 80 -2.2 -5.67529 | GATATTTGCTAATAT GGGA ATAC TCTC TTTTTATTTTTAATT TERM 5308 3693899 - 3693877 - H 71 -8.6 -3.02511 | CTTATTTTGTTAACA GCTATCTATA ATC TATAGATAAC TAATAAAAATAAAAT TERM 5309 3694174 - 3694143 - H 79 -9.8 -2.5806 | opp_overlap 3694132 3694127 3694146, overlap 3694131 3694132 3694146 AAATTTTGGTATAAT TAATTATACAAAAT ATTT ATTTTGTACAATTA TATGGAGGAAATTTA CLI_3538 3694192 - 3694791 + | phage integrase family site specific recombinase TERM 5310 3694888 - 3694919 + T 78 -6 -5.03713 | opp_overlap 3694889, overlap 3694883 3694889 CTGAAGATATAAAAA ACTTTGACATTTTG TTCT CAAAATCTCAAAGC TTTTCTTTAATTATT TERM 5311 3694889 - 3694918 + T 83 -9.5 -3.59787 | opp_overlap 3694889, overlap 3694888 3694883 TGAAGATATAAAAAA CTTTGACATTTTG TTCT CAAAATCTCAAAG CTTTTCTTTAATTAT TERM 5312 3694918 - 3694889 - T 100 -9.5 -5.47431 | opp_overlap 3694889 3694888 3694883 TGAAGATATAAAAAA CTTTGACATTTTG TTCT CAAAATCTCAAAG CTTTTCTTTAATTAT speD 3695452 - 3695102 - | S-adenosylmethionine decarboxylase CLI_3540 3696802 - 3695606 - | hypothetical protein TERM 5313 3697314 - 3697288 - R 100 -8.1 -5.37043 | gap 1, opp_overlap 3697288 AGCGCACACAAAAAA GCAACATAGGGA AGCT TCCC-ATGTCGC TTTTCTTAAAATTAT TERM 5314 3697288 - 3697314 + r 74 -5.9 -4.68705 | gap 1, opp_overlap 3697288 AGCGCACACAAAAAA GCAACATAGGGA AGCT TCCC-ATGTCGC TTTTCTTAAAATTAT CLI_3541 3697601 - 3697326 - | hypothetical protein TERM 5315 3697988 - 3697967 - R 71 -7.3 -3.90048 | overlap 3697965 CTTTGGGTAAAAATA GAGACCTGC TTTC ACAGATCTC TTAAAATGTATAACC CLI_3542 3698392 - 3698072 - | putative transcriptional regulator CLI_3543 3698497 - 3699033 + | putative flavoredoxin TERM 5316 3699214 - 3699178 - T 86 -9.6 -4.18674 | opp_overlap 3699178, overlap 3699206 TCTAGACATAAACAA GACCTCCTGTCGTA TTTTAATCC TACAACAAGAGGTC TTTTCTTGCAATGAA CLI_3544 3700089 - 3699235 - | hypothetical protein CLI_3545 3701406 - 3700561 - | aldo/keto reductase family oxidoreductase TERM 5317 3700706 - 3700716 + g 70 -5.4 -4.68593 | ACAGACTTTGGTAAT GGAA TAA TTCC TTTTTGAATAATCCA TERM 5318 3700835 - 3700819 - G 70 -6.5 -4.07568 | CTGTCCGTTTGAAAA TGGAGCC CAT GCCTCCA CCAAAATATTGCGTT CLI_3546 3702056 - 3701430 - | putative NADPH-dependent FMN reductase CLI_3547 3702268 - 3702690 + | MerR family transcriptional regulator TERM 5319 3702790 - 3702815 + T 95 -12.7 -3.28791 | opp_overlap 3702790 TTAACGTTATTTAAA TTAGGCGCTCA TCTA TGAGTGCCTAA TTCTAAAAAAGGGAT TERM 5320 3702815 - 3702790 - T 91 -10.5 -3.66874 | opp_overlap 3702790 TTAACGTTATTTAAA TTAGGCGCTCA TCTA TGAGTGCCTAA TTCTAAAAAAGGGAT TERM 5321 3703542 - 3703572 + T 84 -9.1 -4.29391 | GATATGGATTTTTCT TTGGCGTGTTGAT TAACT ATGAACACGCCGA TTTCCTTTTATCGTT CLI_3549 3704746 - 3703802 - | hypothetical protein TERM 5322 3704766 - 3704792 + r 73 -6.8 -4.32067 | TTACCTCCGTTTACT TTTTGATTCTAA TGA TTAGGATTAAAA TTATTTTCTAAAATA TERM 5323 3705002 - 3704986 - R 84 -9.5 -3.82353 | opp_overlap 3704984, overlap 3704984 CATTTAAAAATAAGA GTGGATT ATA AATCCAC AGGTATTTTCTTAAC CLI_3550 3705392 - 3704991 - | putative transcriptional regulator CLI_3551 3706031 - 3705624 - | acetyltransferase TERM 5324 3706242 - 3706191 - R 90 -11.2 -3.18105 | opp_overlap 3706192 3706201, overlap 3706192 3706201 TCAACCTAGTAAAAT CCATAAAAAATCACTTGCTTTTTC TCAT AAAATAGCAAGTGATTTTCGATGA TATTTTTAATTTTTA TERM 5325 3706192 - 3706241 + r 78 -9.6 -3.09564 | opp_overlap 3706191 3706192 3706201, overlap 3706201 CAACCTAGTAAAATC CATAAAAAATCACTTGCTTTTT CTCATA AAATAGCAAGTGATTTTCGATG ATATTTTTAATTTTT TERM 5326 3706241 - 3706192 - R 86 -12.5 -2.50381 | opp_overlap 3706192 3706201, overlap 3706191 3706201 CAACCTAGTAAAATC CATAAAAAATCACTTGCTTTTTC TCAT AAAATAGCAAGTGATTTTCGATG ATATTTTTAATTTTT TERM 5327 3706232 - 3706201 - R 100 -9.6 -5.35222 | opp_overlap 3706192 3706201, overlap 3706192 3706191 AAAATCCATAAAAAA TCACTTGCTTTTTC TCAT AAAATAGCAAGTGA TTTTCGATGATATTT TERM 5328 3706201 - 3706232 + r 84 -8.9 -4.24326 | opp_overlap 3706201 3706192 3706191, overlap 3706192 AAAATCCATAAAAAA TCACTTGCTTTTT CTCATA AAATAGCAAGTGA TTTTCGATGATATTT TERM 5329 3706278 - 3706294 + r 79 -3.8 -5.73339 | CTTATCAGCGCCCTT GATATT TTCGC AATATC TTTTTTTCTAATTCT rumA-2 3707829 - 3706444 - | 23S rRNA (uracil-5-)-methyltransferase RumA CLI_3553 3708415 - 3708062 - | hypothetical protein TERM 5330 3708292 - 3708306 + g 84 -8.6 -4.29176 | overlap 3708299 TAGTTTCGATGCCTC CCTTTG CTG CAAAGG TTTTGCATTGGCTAT CLI_3554 3708530 - 3708417 - | hypothetical protein TERM 5331 3708596 - 3708578 - R 82 -4.5 -5.8096 | overlap 3708580 TACAAAAAACAAAAA GAGCACC ATGAA GGTGCTA AAGAAGATCAGTTGC TERM 5332 3708594 - 3708580 - R 77 -7.1 -4.48934 | overlap 3708578 CAAAAAACAAAAAGA GCACC ATGAA GGTGC TAAAGAAGATCAGTT TERM 5333 3708702 - 3708722 + r 70 -2.7 -5.46706 | opp_overlap 3708707, overlap 3708712 AATAGTATACTTTTT TAAAATTTT ATA AAAATGTTA TTTTTATTTTACAAT CLI_3555 3709753 - 3708743 - | aldo/keto reductase family oxidoreductase TERM 5334 3709092 - 3709108 + g 85 -10.9 -3.06845 | opp_overlap 3709090, overlap 3709090 ACTTCTTCTAAATTT GCCATAC CTG GTATGGC TGTAGTTATATTTTT pykA 3711654 - 3709897 - | pyruvate kinase pfkA 3712647 - 3711688 - | 6-phosphofructokinase TERM 5335 3712741 - 3712751 + r 75 -4 -5.60864 | opp_overlap 3712741, overlap 3712735 TATTTTCAATTATAA CATA ACT TATG TTTTTTTAATATATG TERM 5336 3712825 - 3712850 + r 100 -10.7 -5.19819 | opp_overlap 3712825 AAATTTATAAAAAAA TATTAGAAGAA ACAC TTCTTCTAATA TTTTTCATTTTATTT TERM 5337 3712850 - 3712825 - R 100 -10.7 -5.68039 | opp_overlap 3712825 AAATTTATAAAAAAA TATTAGAAGAA ACAC TTCTTCTAATA TTTTTCATTTTATTT dnaE 3716446 - 3712889 - | DNA polymerase III DnaE TERM 5338 3714001 - 3713991 - G 72 -4 -5.16206 | opp_overlap 3713991 AAATTAACATAAAAA GATA CCT TATC ATTATCACCCTTTAC TERM 5339 3716225 - 3716237 + g 82 -7.7 -4.43642 | TACATATATTTCACA GCCTA TTA TAGGC TTTATTCCTTGTTTT CLI_3559 3717556 - 3716609 - | hypothetical protein TERM 5340 3717309 - 3717323 + g 75 -5.8 -4.76311 | opp_overlap 3717309, overlap 3717317 ATAATATATATATTA TTCTTT TTT AAAGAA TTGTTTTTCTTTATC CLI_3560 3718900 - 3717563 - | hypothetical protein CLI_3561 3719781 - 3718897 - | hypothetical protein TERM 5341 3719896 - 3719852 - R 74 -8.8 -3.09491 | opp_overlap 3719860 3719862, overlap 3719855 3719859 3719862 CATATACCTATTTAA CAATAAACTAGGGAAGTCAT TTGTT AAGACTTCCCTTATTTATTA TATTCTAATTGTTTT TERM 5342 3719893 - 3719855 - R 76 -8.3 -3.68836 | opp_overlap 3719860 3719862, overlap 3719852 3719859 3719862 ATACCTATTTAACAA TAAACTAGGGAAGTCAT TTGTT AAGACTTCCCTTATTTA TTATATTCTAATTGT TERM 5343 3719886 - 3719862 - R 72 -8.6 -3.19055 | opp_overlap 3719860 3719862, overlap 3719859 3719855 3719852 TTTAACAATAAACTA GGGAAGTCAT TTGTT AAGACTTCCC TTATTTATTATATTC TERM 5344 3719862 - 3719886 + r 80 -8.6 -4.33203 | opp_overlap 3719862 3719859 3719855 3719852, overlap 3719860 TTTAACAATAAACTA GGGAAGTCAT TTGTT AAGACTTCCC TTATTTATTATATTC murB 3720821 - 3719901 - | UDP-N-acetylenolpyruvoylglucosamine reductase CLI_3563 3721621 - 3720890 - | putative hydrolase uvrC 3723526 - 3721670 - | excinuclease ABC subunit C CLI_3565 3724148 - 3723540 - | putative metal-dependent hydrolase, membrane-bound TERM 5345 3724329 - 3724293 - R 100 -11.2 -4.33739 | opp_overlap 3724298 3724302, overlap 3724294 3724302 TAAAAAATTCTAAAA TTAAATAAATCTTGTG AATTA CACAAGATTTATTTAG TGAAATTATATTTTA TERM 5346 3724328 - 3724294 - R 100 -14.7 -3.18617 | opp_overlap 3724298 3724302, overlap 3724293 3724302 AAAAAATTCTAAAAT TAAATAAATCTTGTG AATTA CACAAGATTTATTTA GTGAAATTATATTTT TERM 5347 3724298 - 3724324 + r 95 -11.1 -3.77206 | opp_overlap 3724294 3724293 3724302, overlap 3724302 AATTCTAAAATTAAA TAAATCTTGTG AATTA CACAAGATTTA TTTAGTGAAATTATA TERM 5348 3724320 - 3724302 - R 83 -7.5 -4.67692 | opp_overlap 3724298 3724302, overlap 3724294 3724293 CTAAAATTAAATAAA TCTTGTG AATTA CACAAGA TTTATTTAGTGAAAT TERM 5349 3724302 - 3724320 + r 81 -7.5 -4.49958 | opp_overlap 3724302 3724294 3724293, overlap 3724298 CTAAAATTAAATAAA TCTTGTG AATTA CACAAGA TTTATTTAGTGAAAT CLI_3566 3725231 - 3724335 - | HD domain-containing protein TERM 5350 3724835 - 3724849 + g 91 -5 -5.90231 | ATCCCATAGCTCCAG TAGCTG CTA TAGCTA TTTTTTTATATTTAT CLI_3567 3726689 - 3725259 - | penicillin-binding protein CLI_3568 3727923 - 3726694 - | cell cycle protein FtsW TERM 5351 3727711 - 3727731 + g 82 -6.9 -4.95547 | opp_overlap 3727711 3727709, overlap 3727726 AAAAATAAACATATA TTTATCTCC ATC GGAGAAAAA TTTTCTTATTATAAA TERM 5352 3727760 - 3727748 - G 74 -6.3 -4.46212 | opp_overlap 3727734 3727748, overlap 3727734 TTTCTTATTATAAAA TAGGA ATA TCCTA TTAATAAACAAGTAA CLI_3569 3728371 - 3727934 - | FHA domain-containing protein TERM 5353 3728461 - 3728430 - R 75 -8.1 -3.65529 | ATATTTGTATTTAAA GGACTAGCACCTA TATGTT TATATGCTAGTCC CAAATAAATTATAAC uvrA 3731292 - 3728470 - | excinuclease ABC, A subunit TERM 5354 3730259 - 3730269 + g 70 -4 -4.9725 | ATAATCTTTACTATT TTAG GAT CTAA TTTTTCTATAGGAGT TERM 5355 3731117 - 3731101 - G 70 -5.1 -4.57073 | CATTTGTCCTAAAAA CTGTCTA GCA TAGGCAG ATAAAGATTCTACAT uvrB 3733299 - 3731311 - | excinuclease ABC subunit B CLI_3572 3734596 - 3733301 - | hypothetical protein TERM 5356 3734655 - 3734621 - R 85 -10.2 -3.28712 | opp_overlap 3734615 3734624, overlap 3734624 3734653 TTCCCCTCTCCATAA CTATGGTTTAGTTAGA AAA TCTAACTAAACCATCT ATATAAAAATATAAA TERM 5357 3734624 - 3734652 + r 100 -16.3 -2.99649 | opp_overlap 3734621 3734624, overlap 3734615 CCCTCTCCATAACTA TGGTTTAGTTAGA AAA TCTAACTAAACCA TCTATATAAAAATAT TERM 5358 3734652 - 3734624 - R 100 -16.3 -2.82623 | opp_overlap 3734615 3734624, overlap 3734621 CCCTCTCCATAACTA TGGTTTAGTTAGA AAA TCTAACTAAACCA TCTATATAAAAATAT CLI_3573 3735890 - 3734685 - | carboxyl-terminal protease TERM 5359 3734904 - 3734914 + g 70 -4 -4.97158 | AGTTTGAACTACACC CTTT CCA AAAG TTTTCTTTCCTATAG TERM 5360 3736001 - 3735973 - R 74 -6.3 -4.58424 | opp_overlap 3735973 3735980, overlap 3735980 CATTATTACAGAAAA TAAAAAATTAATT TTA AATTAATTTTTTT ATTTATAAAACTAGC TERM 5361 3735994 - 3735980 - R 86 -4.4 -5.8901 | opp_overlap 3735980 3735973, overlap 3735973 ACAGAAAATAAAAAA TTAATT TTA AATTAA TTTTTTTATTTATAA TERM 5362 3735980 - 3735994 + r 89 -4.4 -6.02919 | opp_overlap 3735973 3735980, overlap 3735973 ACAGAAAATAAAAAA TTAATT TTA AATTAA TTTTTTTATTTATAA CLI_3574 3736990 - 3736100 - | putative cell division protein FtsX TERM 5363 3736901 - 3736889 - G 79 -7.7 -4.21773 | TCCTAATATAAATAA TGTGG CCG CCACA GTAGCTATAGAAGCC CLI_3575 3737666 - 3736980 - | putative cell division ATP-binding protein FtsE TERM 5364 3737776 - 3737816 + r 80 -8.6 -4.26344 | opp_overlap 3737776 3737784, overlap 3737784 TAAATTATTGTAAAA TATAAAAAGATGTTTGTA AATAA TACAAACATCTTCCTATA TTTTGCTAGCCCTCT TERM 5365 3737816 - 3737776 - R 100 -13 -4.18094 | opp_overlap 3737776 3737784, overlap 3737784 TAAATTATTGTAAAA TATAAAAAGATGTTTGTA AATAA TACAAACATCTTCCTATA TTTTGCTAGCCCTCT TERM 5366 3737784 - 3737808 + r 87 -10.2 -3.46906 | opp_overlap 3737776 3737784, overlap 3737776 TGTAAAATATAAAAA GATGTTTGTA AATAA TACAAACATC TTCCTATATTTTGCT TERM 5367 3737808 - 3737784 - R 100 -10.2 -5.28983 | opp_overlap 3737784 3737776, overlap 3737776 TGTAAAATATAAAAA GATGTTTGTA AATAA TACAAACATC TTCCTATATTTTGCT CLI_3576 3738724 - 3737822 - | hypothetical protein TERM 5368 3738627 - 3738616 - G 89 -4.4 -5.95539 | GTTGAAAGAAAAAAA CTAC TGAT GTAG CTACTAAGAAAACTC TERM 5369 3738752 - 3738734 - R 71 -8.2 -2.99871 | opp_overlap 3738734, overlap 3738731 TCCCACATGAAATTA CACCTTCT ATG AAAAGGTG TTATAGGCTAAATAT CLI_3577 3739167 - 3738817 - | hypothetical protein TERM 5370 3739202 - 3739222 + r 71 -5.3 -4.7254 | opp_overlap 3739202 3739207 TTTAAGAATACAAAA GGGAAGGTA AAG TACCAACCC TTTTTAATAAAAAAT TERM 5371 3739222 - 3739202 - R 73 -5.3 -4.79752 | opp_overlap 3739202, overlap 3739207 TTTAAGAATACAAAA GGGAAGGTA AAG TACCAACCC TTTTTAATAAAAAAT CLI_3578 3740181 - 3739240 - | putative transketolase, C-terminal subunit CLI_3579 3741005 - 3740181 - | putative transketolase, N-terminal subunit TERM 5372 3741104 - 3741070 - R 75 -7.5 -3.93691 | TAACATAAAAATTAA TTTTAATATATAGGT GCAAA AGCTATATATTAAAA CAGTATTTTGGGCTA TERM 5373 3741263 - 3741241 - R 100 -8.5 -5.59357 | opp_overlap 3741241 3741240 3741243 ATGATATCAAAAAAA GATAAGGGC AAAAA ACCCTTATC CTATTTAATTCAAAG CLI_3580 3741621 - 3741268 - | PemK family protein CLI_3581 3741901 - 3741578 - | hypothetical protein alr-2 3743200 - 3742040 - | alanine racemase TERM 5374 3742823 - 3742833 + g 76 -2.6 -5.61881 | ATCTACCACTATATG TATT TTT AATA TTTTTCTTTTTAGCA CLI_3583 3743842 - 3743228 - | hypothetical protein CLI_3584 3745544 - 3744042 - | carbohydrate kinase family protein acpS 3745921 - 3745541 - | holo-(acyl-carrier-protein) synthase TERM 5375 3746018 - 3745977 - R 70 -3.3 -5.32944 | gap 1, opp_overlap 3745981 3746007 3746015, overlap 3745981 TTTATAAGTAAAAAA CA-AAGGATAAATAGTTAAA ATT TATTACTATTTATCCTTATA AATTATATATAATTA TERM 5376 3746013 - 3745981 - R 93 -7.9 -5.12785 | opp_overlap 3745981 3746007, overlap 3745977 TAAGTAAAAAACAAA GGATAAATAGTTAAA ATT TATTACTATTTATCC TTATAAATTATATAT TERM 5377 3745981 - 3746013 + r 70 -7.9 -3.46913 | opp_overlap 3745981 3745977, overlap 3746007 TAAGTAAAAAACAAA GGATAAATAGTTAAA ATT TATTACTATTTATCC TTATAAATTATATAT CLI_3586 3746398 - 3746036 - | hypothetical protein TERM 5378 3746769 - 3746721 - R 79 -5 -5.49234 | gap 1, opp_overlap 3746721 3746716 ACATCTAATAAAAAA TAATAACACAAATTTACTTT-AT TTCT ATAAAAGCTATTTTGTGTTATTA TTTTACTTATTATAT CLI_3587 3748119 - 3746794 - | Na+/H+ antiporter family protein TERM 5379 3748242 - 3748220 - R 88 -4.9 -5.9218 | opp_overlap 3748220 TATATAATAAAAAAA CTTCTTGCA GATAA CACAAGAAG TTGATTTCCTCTATA CLI_3588 3749282 - 3748425 - | YihY family protein TERM 5380 3749417 - 3749391 - R 100 -11.8 -5.69473 | opp_overlap 3749391 TAGATCATAAAAAAA TAAAGGACTAGA AAA TCTAATCCTTTA TTTTTATACTTTTAT TERM 5381 3749391 - 3749417 + r 100 -9.6 -5.10601 | opp_overlap 3749391 TAGATCATAAAAAAA TAAAGGACTAGA AAA TCTAATCCTTTA TTTTTATACTTTTAT CLI_3589 3750102 - 3749443 - | hypothetical protein rpsD-1 3750910 - 3750317 - | 30S ribosomal protein S4 TERM 5382 3750602 - 3750628 + g 82 -11 -2.79983 | opp_overlap 3750609 3750617, overlap 3750599 3750597 3750604 3750606 3750609 3750625 TTGTCTAGCCTGTCT TATAGAATTGGC AAA GCCTATTCTATA TGCTATATTGTCTAA TERM 5383 3750604 - 3750626 + g 75 -9.2 -2.94034 | opp_overlap 3750609 3750617, overlap 3750602 3750599 3750597 3750606 3750609 3750625 GTCTAGCCTGTCTTA TAGAATTGGC AAA GCCTATTCTA TATGCTATATTGTCT TERM 5384 3751381 - 3751365 - g 73 -3.7 -5.31059 | overlap 3751375 ATATCAATGAAAAAA TTGGG ATTAATA CCCAA AATTATTATAGCCAT CLI_3591 3751356 - 3752528 + | sodium:dicarboxylate symporter family protein TERM 5385 3752591 - 3752537 - f 82 -9.1 -4.08651 | gap 1, opp_overlap 3752543 3752548, overlap 3752546 3752548 AGCTTAACTAAACAA TTTATATAAGATAGGTGTATAAAAGT TTTT ACTTCTATACACCTATTTTAT-TAAT ATAGTATAAGAACTC TERM 5386 3752543 - 3752586 + F 100 -15 -3.31269 | opp_overlap 3752537 3752546 3752548, overlap 3752548 ACTAAACAATTTATA TAAGATAGGTGTATAAAAGT TTTT ACTTCTATACACCTATTTTA TTAATATAGTATAAG TERM 5387 3752583 - 3752546 - f 95 -12.3 -3.58231 | opp_overlap 3752543 3752548, overlap 3752537 3752548 AAACAATTTATATAA GATAGGTGTATAAAAGT TTTT ACTTCTATACACCTATT TTATTAATATAGTAT TERM 5388 3752581 - 3752548 - f 100 -14.9 -3.35384 | opp_overlap 3752543 3752548, overlap 3752546 3752537 ACAATTTATATAAGA TAGGTGTATAAAAGT TTTT ACTTCTATACACCTA TTTTATTAATATAGT TERM 5389 3752548 - 3752581 + F 100 -12.7 -4.76075 | opp_overlap 3752548 3752546 3752537, overlap 3752543 ACAATTTATATAAGA TAGGTGTATAAAAGT TTTT ACTTCTATACACCTA TTTTATTAATATAGT CLI_3592 3752687 - 3753154 + | hypothetical protein TERM 5390 3753185 - 3753238 + T 100 -13.7 -5.30616 | opp_overlap 3753191 3753196, overlap 3753186 3753187 3753191 3753234 ATATGAATGAAATCA GGCAAATAAAATTCTGTTAGAAATA ACCA TATTTTTAACAGAATTTTATTTGGG TTTTTCTTTAAATAC TERM 5391 3753186 - 3753237 + T 100 -17.2 -3.77285 | opp_overlap 3753191 3753196, overlap 3753185 3753187 3753191 3753234 TATGAATGAAATCAG GCAAATAAAATTCTGTTAGAAATA ACCA TATTTTTAACAGAATTTTATTTGG GTTTTTCTTTAAATA TERM 5392 3753187 - 3753236 + T 100 -20.7 -2.85286 | opp_overlap 3753191 3753196, overlap 3753186 3753185 3753191 3753234 ATGAATGAAATCAGG CAAATAAAATTCTGTTAGAAATA ACCA TATTTTTAACAGAATTTTATTTG GGTTTTTCTTTAAAT TERM 5393 3753191 - 3753232 + T 100 -15.7 -4.06851 | opp_overlap 3753191 3753196, overlap 3753187 3753186 3753185 ATGAAATCAGGCAAA TAAAATTCTGTTAGAAATA ACCA TATTTTTAACAGAATTTTA TTTGGGTTTTTCTTT TERM 5394 3753232 - 3753191 - T 100 -13.5 -3.74626 | opp_overlap 3753187 3753186 3753185 3753191, overlap 3753196 ATGAAATCAGGCAAA TAAAATTCTGTTAGAAATA ACCA TATTTTTAACAGAATTTTA TTTGGGTTTTTCTTT TERM 5395 3753227 - 3753196 - T 100 -9 -4.9138 | opp_overlap 3753191 3753187 3753186 3753185, overlap 3753191 ATCAGGCAAATAAAA TTCTGTTAGAAATA ACCA TATTTTTAACAGAA TTTTATTTGGGTTTT TERM 5396 3753496 - 3753521 + T 100 -9.1 -5.61881 | opp_overlap 3753496 TATTCCATAAAAAAA GAAAACCAGGA ATAA TCCTGATTTTC TTTTTATTTTTAAAA TERM 5397 3753521 - 3753496 - T 100 -11.3 -5.626 | opp_overlap 3753496 TATTCCATAAAAAAA GAAAACCAGGA ATAA TCCTGATTTTC TTTTTATTTTTAAAA glmS 3755425 - 3753599 - | glucosamine--fructose-6-phosphate aminotransferase, isomerizing TERM 5398 3755466 - 3755433 - R 86 -5.5 -5.71712 | overlap 3755435 3755461 CCGCACATAAAAAAA TCCTCCTTAGATTAT ATTA ATAATTTAAGAAGAA AGTCCTCACTAAAGC TERM 5399 3755628 - 3755645 + r 78 -8.5 -3.91597 | opp_overlap 3755628 GGCTAGTGGAACTTA CTCAGAT GCTA ATCTGAG TTTCCTCTATATACT TERM 5400 3755661 - 3755677 + r 72 -8.1 -3.16742 | TTTCCTCTATATACT CCAAATT TTC AATTTGG TTAGTGGAACTTACC CLI_3594 3756768 - 3756091 - | putative transaldolase CLI_3595 3757434 - 3756787 - | haloacid dehalogenase, IA family protein srlD 3758243 - 3757458 - | sorbitol-6-phosphate dehydrogenase TERM 5401 3758210 - 3758224 + g 77 -7.2 -4.27584 | AACTTTGAGCTCCTC CTGTTA TTA TAACAG TTTTCCCTTGAAAAT CLI_3597 3758629 - 3758264 - | PTS system, glucitol/sorbitol-specific, IIA component TERM 5402 3758746 - 3758718 - R 87 -9.9 -3.38484 | opp_overlap 3758717 3758716 ATAATATAAATTCAA TTGTATATTTAAA TAA CTTAAATATACAA AATTATTATTATACA TERM 5403 3758785 - 3758831 + r 88 -8.4 -4.74132 | opp_overlap 3758775 3758771 3758790 3758795 3758798, overlap 3758790 ATTAATTTAAATTAT TTAAATATAAGAATAAAAGAAT GCA ATCCTTTTATCCTTATATTTTA TTTTTAATCAAATCT TERM 5404 3758826 - 3758790 - R 95 -12.7 -3.74224 | opp_overlap 3758785 3758790, overlap 3758771 3758795 3758798 TTTAAATTATTTAAA TATAAGAATAAAAGAAT GCA ATCCTTTTATCCTTATA TTTTATTTTTAATCA TERM 5405 3758790 - 3758826 + r 100 -8.3 -5.3104 | opp_overlap 3758771 3758790 3758795 3758798, overlap 3758785 TTTAAATTATTTAAA TATAAGAATAAAAGAAT GCA ATCCTTTTATCCTTATA TTTTATTTTTAATCA TERM 5406 3758821 - 3758795 - R 78 -8.2 -3.84587 | opp_overlap 3758790 3758785, overlap 3758790 3758798 ATTATTTAAATATAA GAATAAAAGAAT GCA ATCCTTTTATCC TTATATTTTATTTTT CLI_3598 3759849 - 3758845 - | PTS system, glucitol/sorbitol-specific, IIBC component CLI_3599 3760407 - 3759862 - | PTS system, glucitol/sorbitol-specific, IIC component gutM 3760845 - 3760450 - | glucitol operon activator protein TERM 5407 3760613 - 3760556 - G 81 -10.4 -3.08088 | opp_overlap 3760567, overlap 3760559 AAATTTTTCAATATA TTAGGATTTATGC-TATGGAGATTTTGA TTGT TCAAAATCTCCATAGGCTTAAAT-CTAG CTAAAATAGTAATTC TERM 5408 3760611 - 3760559 - G 100 -14.6 -2.7535 | gap 1, opp_overlap 3760567, overlap 3760556 TTTTTCAATATATTA GGATTTATGC-TATGGAGATTTTGA TTGT TCAAAATCTCCATAGGCTTAAATCT AGCTAAAATAGTAAT TERM 5409 3760567 - 3760603 + g 100 -14.8 -3.1355 | gap 1, opp_overlap 3760559 3760556 TATATTAGGATTTAT GC-TATGGAGATTTTGA TTGT TCAAAATCTCCATAGGC TTAAATCTAGCTAAA CLI_3601 3761908 - 3760859 - | putative L-iditol 2-dehydrogenase TERM 5410 3761933 - 3761945 + r 73 -3.5 -5.5762 | CTCCCTTCAAAGTTT TAAAT TAT ATTTA TTTTTTATCTTTAGT CLI_3602 3762914 - 3761943 - | putative glucitol operon regulator TERM 5411 3763025 - 3763047 + r 87 -7.2 -5.22104 | opp_overlap 3763045, overlap 3763045 TGAAATTTTGTTTTA TTGTTGTATT TAT AATATAACAA TTTTATTGTTTTTTC TERM 5412 3763198 - 3763245 + r 100 -20.5 -4.13014 | opp_overlap 3763198, overlap 3763241 TATTATAATAAAAAA CATAAGGGTAATTTATAATTA ACCTAA TAATTATAAATTACCCTTATG TTTTAAAAATATAAA TERM 5413 3763245 - 3763198 - R 100 -20.5 -5.58179 | opp_overlap 3763198 3763241 TATTATAATAAAAAA CATAAGGGTAATTTATAATTA ACCTAA TAATTATAAATTACCCTTATG TTTTAAAAATATAAA glmM 3764619 - 3763270 - | phosphoglucosamine mutase TERM 5414 3763765 - 3763783 + g 72 -2.5 -5.35815 | TCCAAGATTACTCAT TACAGTA ACTAC TATTGTA TTTTTCTTTAATCTA TERM 5415 3764740 - 3764714 - R 100 -13.1 -5.36364 | opp_overlap 3764713 3764712 TGAAAAATATAAAAA GCCAGTGAAGA TATTT TCTCCACTGGC AATATTTAATTTATT CLI_3605 3767105 - 3766035 - | 2-ketoisovalerate ferredoxin reductase CLI_3606 3767330 - 3767121 - | putative 2-oxoacid:acceptor oxidoreductase, delta subunit TERM 5416 3767234 - 3767254 + g 78 -6.3 -4.79949 | TATAGCCTTTTACAT TTAGTTTTT CTG AAAAGCTAA TTATTTTTTTAGGGC CLI_3607 3768094 - 3767432 - | hypothetical protein buk-1 3769427 - 3768357 - | butyrate kinase ptb 3770367 - 3769456 - | phosphate butyryltransferase TERM 5417 3770325 - 3770335 + g 78 -6.8 -4.58303 | TAGTTCTTCTTTCTT GGCT CTT AGCC TTTTGTAGTATTTCA buk-2 3771454 - 3770360 - | butyrate kinase CLI_3611 3773153 - 3771555 - | oxidoreductase, FAD-binding CLI_3612 3774435 - 3773155 - | hypothetical protein TERM 5418 3773555 - 3773569 + gr 79 -7.2 -4.45187 | ACTAATATAACTCCT TTTGGT AAT ACCAAA TTATTTTCTATATTT TERM 5419 3773695 - 3773707 + gr 81 -4.9 -5.39905 | ATTTTGTAATGGTGT TATAG ATT CTATA TTTTTATTGTTTGAT TERM 5420 3774306 - 3774320 + gr 100 -8.6 -5.36314 | CCTTATTTACTATGT TAACGG GAA CCGTTA TTTTTTGCTCTTTTA CLI_3613 3775253 - 3774405 - | hypothetical protein TERM 5421 3775533 - 3775556 + G 90 -8.4 -4.92777 | opp_overlap 3775536 ATTTTTTATTGGATG TAATTATAGT TTTA ACTATAATTA TTTTTAGTTCATCTT CLI_3614 3775508 - 3776041 + | cell wall hydrolase family protein TERM 5422 3776120 - 3776072 - T 81 -5.6 -5.35459 | gap 1, opp_overlap 3776076 3776078, overlap 3776078 ATATATTATAAAAAA TCAAA-AGGATTTAGCGCAAAAT TCAA ATTGTGTGCTAAATCCTATTTTA TTTATTTGTAAAATA TERM 5423 3776076 - 3776115 + T 100 -10.2 -5.22481 | opp_overlap 3776072 3776078, overlap 3776078 ATTATAAAAAATCAA AAGGATTTAGCGCAAAAT TCAA ATTGTGTGCTAAATCCTA TTTTATTTATTTGTA TERM 5424 3776113 - 3776078 - T 100 -10.6 -4.90477 | opp_overlap 3776076 3776078, overlap 3776072 TATAAAAAATCAAAA GGATTTAGCGCAAAAT TCAA ATTGTGTGCTAAATCC TATTTTATTTATTTG TERM 5425 3776078 - 3776113 + T 100 -12.8 -4.20284 | opp_overlap 3776078 3776072, overlap 3776076 TATAAAAAATCAAAA GGATTTAGCGCAAAAT TCAA ATTGTGTGCTAAATCC TATTTTATTTATTTG TERM 5426 3776347 - 3776308 - T 73 -8.8 -2.90615 | gap 1, opp_overlap 3776315 3776344, overlap 3776311 3776312 3776314 ATTTCCCCTAAAGGA TAAC-GACTTCTAAGGAGT AGA ACTCCTAAGAATTCTGTTA ATAAGCTTTAGTGGG TERM 5427 3776342 - 3776312 - T 79 -9.8 -2.75769 | opp_overlap 3776315, overlap 3776311 3776308 3776314 CCCCTAAAGGATAAC GACTTCTAAGGAGT AGA ACTCCTAAGAATTC TGTTAATAAGCTTTA TERM 5428 3776315 - 3776339 + T 90 -10.1 -3.71552 | opp_overlap 3776314 3776312 3776311 3776308 CTAAAGGATAACGAC TTCTAAGGAGT AGA ACTCCTAAGAA TTCTGTTAATAAGCT CLI_3615 3777246 - 3776383 - | pyridine nucleotide-disulfide family oxidoreductase TERM 5429 3777300 - 3777273 - R 100 -10.8 -4.5366 | opp_overlap 3777273 CTAAAAAATGTAAAA TTGAGAATAACA TTAA TGCTATTCTCAA TTTATTTTATATTAA TERM 5430 3777273 - 3777300 + r 88 -8.6 -4.88163 | opp_overlap 3777273 CTAAAAAATGTAAAA TTGAGAATAACA TTAA TGCTATTCTCAA TTTATTTTATATTAA trx 3777629 - 3777312 - | thioredoxin iadA 3778913 - 3777738 - | isoaspartyl dipeptidase TERM 5431 3778258 - 3778277 + g 72 -5 -4.84642 | GTAGGTATAATTTGA GATGCAGG TATT TCTGTATC TTTTATTAGTTTAAA CLI_3618 3780241 - 3778988 - | TPR repeat-containing protein TERM 5432 3780294 - 3780309 + r 73 -2.6 -5.76237 | AATTCTTTTACTTTA TCATTA GAAA TAGTGA TTTTTTCTTTATGTG CLI_3619 3781009 - 3780269 - | putative lipoprotein TERM 5433 3780767 - 3780785 + g 90 -7.6 -5.13354 | overlap 3780776 ATCTACTATCTCTTC TTTTTCTA CTT TAGAAAAA TTTGTTTTTTCTGAA TERM 5434 3781095 - 3781078 - R 80 -2.7 -6.06723 | TTGTGTAAAAAAAAA CTCCATG AAAA CATAAAG TTAACATGAAGCTTT ptsI 3782734 - 3781115 - | phosphoenolpyruvate-protein phosphotransferase CLI_3621 3783052 - 3785061 + | putative sensory box sigma-54 dependent transcriptional regulator TERM 5435 3785126 - 3785080 - T 100 -11.4 -4.08042 | opp_overlap 3785082 3785092, overlap 3785081 3785092 TTTATTATAAAAATA TCTAAATAAAAAGATTTAAAAT TTG ATTTTAAATCTTTTTATTTATC CTTAAATTCAACTAT TERM 5436 3785125 - 3785081 - T 100 -14.9 -3.04102 | opp_overlap 3785082 3785092, overlap 3785080 3785092 TTATTATAAAAATAT CTAAATAAAAAGATTTAAAAT TTG ATTTTAAATCTTTTTATTTAT CCTTAAATTCAACTA TERM 5437 3785082 - 3785124 + T 100 -18.4 -2.78891 | opp_overlap 3785081 3785080 3785092, overlap 3785092 TATTATAAAAATATC TAAATAAAAAGATTTAAAAT TTG ATTTTAAATCTTTTTATTTA TCCTTAAATTCAACT TERM 5438 3785114 - 3785092 - T 100 -9.4 -5.31519 | opp_overlap 3785082 3785092, overlap 3785081 3785080 ATATCTAAATAAAAA GATTTAAAAT TTG ATTTTAAATC TTTTTATTTATCCTT TERM 5439 3785092 - 3785114 + T 100 -9.4 -5.4182 | opp_overlap 3785092 3785081 3785080, overlap 3785082 ATATCTAAATAAAAA GATTTAAAAT TTG ATTTTAAATC TTTTTATTTATCCTT CLI_3622 3785905 - 3785198 - | TPR repeat-containing protein CLI_3623 3786529 - 3785975 - | tartrate/fumarate subfamily Fe-S type hydro-lyase beta subunit CLI_3624 3787472 - 3786630 - | fumarate hydratase TERM 5440 3787609 - 3787574 - R 100 -16.6 -4.82901 | opp_overlap 3787574 CGGTCTTTATAAAAA TAAGTTCATATATTTC CTTG GAAATATATGAACTTA TTTTTACTCTTTATC TERM 5441 3787574 - 3787609 + r 100 -16.6 -4.96106 | opp_overlap 3787574 CGGTCTTTATAAAAA TAAGTTCATATATTTC CTTG GAAATATATGAACTTA TTTTTACTCTTTATC CLI_3625 3788317 - 3787613 - | N-acetylmuramoyl-L-alanine amidase TERM 5442 3788082 - 3788093 + g 74 -3 -5.37171 | ACAACCTTATAACCT TCTT TTTT AAGA TTTTTCTTTAATATT TERM 5443 3788507 - 3788485 - R 93 -7.1 -5.80364 | opp_overlap 3788485 ATTTTAATAAAAAAA CTCTACTTA TTAAC TAAGCAGAG TTTTTCATAATATAA TERM 5444 3788485 - 3788507 + r 70 -4.9 -4.79223 | opp_overlap 3788485 ATTTTAATAAAAAAA CTCTACTTA TTAAC TAAGCAGAG TTTTTCATAATATAA CLI_3626 3790193 - 3788577 - | Na/Pi-cotransporter family protein/PhoU family protein TERM 5445 3790463 - 3790485 + r 80 -9.2 -3.26767 | opp_overlap 3790463, overlap 3790461 TTAAGCAATAAAAAA GGAAAGACAA AAA TAGTCTTTCC TCTTGATTCCATATT TERM 5446 3790485 - 3790463 - R 100 -9.2 -5.5604 | opp_overlap 3790461 3790463 TTAAGCAATAAAAAA GGAAAGACAA AAA TAGTCTTTCC TCTTGATTCCATATT rpsI 3790891 - 3790499 - | 30S ribosomal protein S9 rplM 3791354 - 3790917 - | 50S ribosomal protein L13 truA-2 3792215 - 3791475 - | tRNA pseudouridine synthase A CLI_3630 3793018 - 3792215 - | cobalt ABC transporter permease CLI_3631 3793881 - 3793015 - | cobalt transporter ATP-binding subunit CLI_3632 3794714 - 3793866 - | cobalt transporter ATP-binding subunit TERM 5447 3793969 - 3793987 + g 74 -2.4 -5.5943 | overlap 3793970 GCTATTTCCGTCATT TGGGGT ACATCTA ACCCTA TTTTTTTCATCATTT TERM 5448 3794799 - 3794767 - R 93 -9.4 -4.38171 | gap 1 TATATTATAGCAAAA TGGGGACTAAGT-TA ACTT TATACTTAATCCCCA AAGAATTATACTAAT rplQ 3795146 - 3794805 - | 50S ribosomal protein L17 rpoA 3796137 - 3795190 - | DNA-directed RNA polymerase subunit alpha rpsD-2 3796825 - 3796205 - | 30S ribosomal protein S4 rpsK 3797258 - 3796860 - | 30S ribosomal protein S11 TERM 5449 3797050 - 3797077 + g 81 -6.4 -5.07486 | gap 1, overlap 3797036 3797047 3797054 TTAGCTGCTGTTTCT GCA-GCCATTTGT GCT GCAAATGGTGTGC TTTTTCTTGAACCTC TERM 5450 3797054 - 3797072 + g 72 -8.2 -3.25358 | overlap 3797036 3797047 3797050 CTGCTGTTTCTGCAG CCATTTGT GCT GCAAATGG TGTGCTTTTTCTTGA rpsM 3797647 - 3797276 - | 30S ribosomal protein S13 TERM 5451 3797465 - 3797491 + g 75 -7.4 -4.05004 | AACTTTTACATTCTT GTTAACGTAATC TCT GATTGCATTAAC TTCTTCTTCTGATAA rpmJ 3797873 - 3797760 - | 50S ribosomal protein L36 infA 3798108 - 3797890 - | translation initiation factor IF-1 CLI_3640 3798397 - 3798116 - | hypothetical protein map-1 3799161 - 3798412 - | methionine aminopeptidase, type I TERM 5452 3798816 - 3798833 + g 77 -8.5 -3.73647 | opp_overlap 3798816 CAGCTTCCTCTGAAA CATTTCC TACT GGAAATG TTCTTGCTGCATCGC TERM 5453 3798833 - 3798816 - G 73 -8.5 -3.53224 | opp_overlap 3798816 CAGCTTCCTCTGAAA CATTTCC TACT GGAAATG TTCTTGCTGCATCGC adk 3799811 - 3799161 - | adenylate kinase TERM 5454 3799368 - 3799386 + g 72 -8.2 -3.23183 | ACATATATCACATTT TCCTTCTA TTT TAGGAGGA TTAAATCTTATGTGA TERM 5455 3799675 - 3799698 + g 74 -8.2 -3.61654 | opp_overlap 3799681, overlap 3799673 3799677 3799681 CTTTTTGCTTCTATT CCTAAAGGAG TTTT CTCCTTTATG TTTGCCCTAAATATA TERM 5456 3799677 - 3799696 + g 79 -9.4 -3.38522 | opp_overlap 3799681, overlap 3799673 3799675 3799681 TTTTGCTTCTATTCC TAAAGGAG TTTT CTCCTTTA TGTTTGCCCTAAATA TERM 5457 3799681 - 3799692 + g 70 -5.8 -4.33928 | opp_overlap 3799681, overlap 3799673 3799677 3799675 GCTTCTATTCCTAAA GGAG TTTT CTCC TTTATGTTTGCCCTA secY 3801112 - 3799835 - | preprotein translocase subunit SecY rplO 3801553 - 3801113 - | 50S ribosomal protein L15 TERM 5458 3801183 - 3801193 + g 86 -2.6 -6.08563 | GAGAATTTTGCTGCT TTAA CAG TTAA TTTTTTTTCTATATT rpmD 3801752 - 3801573 - | 50S ribosomal protein L30 TERM 5459 3801628 - 3801642 + g 73 -8.6 -3.09648 | ATCATTCCACTTATT TGAGGA GTT TCCTCA TGTTCAACTATGTTA rpsE 3802263 - 3801766 - | 30S ribosomal protein S5 TERM 5460 3802026 - 3802040 + g 84 -8.6 -4.2803 | overlap 3802022 TTATATCATGTGGTA CAGTAG TTC CTACTG TTTTAACTTCAACTA TERM 5461 3802303 - 3802319 + r 71 -6.6 -4.15577 | TCAAGACCTGCTTCT CTTGCA CCTTC TGCAAG TTCTTTAATTCTTCC rplR 3802640 - 3802281 - | 50S ribosomal protein L18 rplF 3803201 - 3802659 - | 50S ribosomal protein L6 TERM 5462 3803117 - 3803155 + g 72 -8.3 -3.21912 | overlap 3803143 ACTCTCCCTTTGGTC CTTTTACAGTAACAACG TTATC TGGTGTTACTGTAACAG TTACTCCATTAGGGA rpsH 3803623 - 3803225 - | 30S ribosomal protein S8 rpsN 3803838 - 3803653 - | 30S ribosomal protein S14 rplE 3804397 - 3803855 - | 50S ribosomal protein L5 rplX 3804737 - 3804420 - | 50S ribosomal protein L24 rplN 3805129 - 3804761 - | 50S ribosomal protein L14 rpsQ 3805418 - 3805164 - | 30S ribosomal protein S17 rpmC 3805652 - 3805440 - | ribosomal protein L29 rplP 3806085 - 3805642 - | 50S ribosomal protein L16 rpsC 3806774 - 3806103 - | 30S ribosomal protein S3 rplV 3807127 - 3806792 - | 50S ribosomal protein L22 rpsS 3807433 - 3807149 - | 30S ribosomal protein S19 TERM 5463 3807469 - 3807505 + r 77 -7.6 -4.07107 | gap 1, opp_overlap 3807471 3807473, overlap 3807471 3807473 CAATCATATGATTAC AAGATT-GAAGAGAATA TTAA TATTCTCTTCAAATCTA TTTATCATGTCTTCT TERM 5464 3807471 - 3807503 + r 89 -10.2 -3.61777 | gap 1, opp_overlap 3807471 3807473, overlap 3807469 3807473 ATCATATGATTACAA GATT-GAAGAGAATA TTAA TATTCTCTTCAAATC TATTTATCATGTCTT TERM 5465 3807503 - 3807471 - R 87 -10.2 -3.46117 | gap 1, opp_overlap 3807469 3807471 3807473, overlap 3807473 ATCATATGATTACAA GATT-GAAGAGAATA TTAA TATTCTCTTCAAATC TATTTATCATGTCTT TERM 5466 3807500 - 3807473 - R 95 -13 -3.29987 | opp_overlap 3807471 3807469 3807473, overlap 3807471 CATATGATTACAAGA TTGAAGAGAATA TTAA TATTCTCTTCAA ATCTATTTATCATGT TERM 5467 3807473 - 3807500 + r 90 -13 -2.61656 | opp_overlap 3807473 3807471, overlap 3807471 3807469 CATATGATTACAAGA TTGAAGAGAATA TTAA TATTCTCTTCAA ATCTATTTATCATGT rplB 3808336 - 3807503 - | 50S ribosomal protein L2 rplW 3808684 - 3808391 - | ribosomal protein L23 rplD 3809304 - 3808684 - | 50S ribosomal protein L4 rplC 3809958 - 3809329 - | 50S ribosomal protein L3 rpsJ 3810356 - 3810048 - | 30S ribosomal protein S10 TERM 5468 3810581 - 3810592 + r 82 -3 -6.34616 | ACATTACAACTTCTA TAGT ATAC ACTA TTTTTTTTATTTTGA TERM 5469 3810708 - 3810679 - R 100 -13.1 -3.87994 | opp_overlap 3810684 3810707, overlap 3810684 ACTTATTTTTATAAA CAAAAGGAAAGAG CGTC CTCTTTCCTTTTA GATATTATATATTTA TERM 5470 3810684 - 3810703 + r 95 -10.8 -4.31043 | opp_overlap 3810679 3810684 TTTTTATAAACAAAA GGAAAGAG CGTC CTCTTTCC TTTTAGATATTATAT TERM 5471 3810703 - 3810684 - R 100 -10.8 -4.99043 | opp_overlap 3810684, overlap 3810679 TTTTTATAAACAAAA GGAAAGAG CGTC CTCTTTCC TTTTAGATATTATAT tuf-1 3811939 - 3810746 - | elongation factor Tu fusA-1 3814048 - 3811979 - | elongation factor G TERM 5472 3814083 - 3814119 + r 100 -18.3 -3.35912 | opp_overlap 3814090, overlap 3814085 3814090 TTCAAATTCAAATTT GACAAAACTGTTTTGGC ACA GCCAAAACAGTTTTGTA TTAGTATCTGTAATG TERM 5473 3814085 - 3814117 + r 100 -20.9 -3.24235 | opp_overlap 3814090, overlap 3814083 3814090 CAAATTCAAATTTGA CAAAACTGTTTTGGC ACA GCCAAAACAGTTTTG TATTAGTATCTGTAA TERM 5474 3814112 - 3814090 - R 100 -15 -4.44974 | opp_overlap 3814085 3814083 3814090 TCAAATTTGACAAAA CTGTTTTGGC ACA GCCAAAACAG TTTTGTATTAGTATC TERM 5475 3814090 - 3814112 + r 100 -15 -4.7219 | opp_overlap 3814090, overlap 3814085 3814083 TCAAATTTGACAAAA CTGTTTTGGC ACA GCCAAAACAG TTTTGTATTAGTATC rpsG 3814590 - 3814120 - | 30S ribosomal protein S7 TERM 5476 3814360 - 3814382 + g 86 -10 -3.85505 | TCCACCTATTCTTCT TGCTTTTACT TCA AGTAAAGGCA TTATGTTGTTCATGG rpsL 3815128 - 3814751 - | 30S ribosomal protein S12 TERM 5477 3814881 - 3814910 + g 74 -8.8 -3.32963 | opp_overlap 3814888, overlap 3814888 TTAACTCTTCCACCT CTTATAAGAACA ACACTG TGTTCTTGTAAG TTGTGACCTACACCT TERM 5478 3815231 - 3815216 - R 75 -9 -3.16564 | opp_overlap 3815215 TGTTTATTTCAGTAA TGCTGC TGTA GCAGCA CTTACATCAATACCA CLI_3669 3815446 - 3815204 - | ribosomal protein L7Ae family protein TERM 5479 3815475 - 3815500 + r 74 -9.1 -3.07522 | opp_overlap 3815475 3815480, overlap 3815479 AAATTCCATTAATAA GGAAACAAAGT AATA ACTTTGCTTCC TGTATTAAAACATAT TERM 5480 3815500 - 3815475 - R 95 -11.3 -3.73936 | opp_overlap 3815475 3815479, overlap 3815480 AAATTCCATTAATAA GGAAACAAAGT AATA ACTTTGCTTCC TGTATTAAAACATAT rpoC 3819104 - 3815568 - | DNA-directed RNA polymerase subunit beta' TERM 5481 3817114 - 3817126 + g 71 -2 -5.4111 | ATAAACCCTCTACGA TACA TTTTT TGTA TTTTTTCTACTTGTT TERM 5482 3818229 - 3818242 + g 72 -5.3 -4.76088 | TATTAAAGCATCTAC TGCTT CTTG AAGCA TTCTTTTTTCATTTC rpoB 3822829 - 3819125 - | DNA-directed RNA polymerase subunit beta TERM 5483 3820082 - 3820100 + g 72 -5.3 -4.74285 | TAATTTATTAACTCC TGGTGGT AATTC ATCACCA TTTTCTCTTGTAAAT TERM 5484 3820791 - 3820828 + g 74 -9.3 -2.7566 | gap 1, overlap 3820788 TTATATTCTATACCT GTTCCAACTATTGGAGCC TGT GGCTTTAATAG-TGGTAC TGCTTGACGTTGCAT TERM 5485 3823066 - 3823087 + r 82 -10.2 -3.00022 | opp_overlap 3823066 AAGTATACTAAAAAA GGGGTACT TACTTT AGTACCCC TCTATGTAGAGTAAA TERM 5486 3823087 - 3823066 - R 100 -10.2 -5.2422 | opp_overlap 3823066 AAGTATACTAAAAAA GGGGTACT TACTTT AGTACCCC TCTATGTAGAGTAAA rplL 3823472 - 3823104 - | ribosomal protein L7/L12 rplJ 3824020 - 3823520 - | 50S ribosomal protein L10 TERM 5487 3824090 - 3824066 - R 100 -12.9 -4.52415 | overlap 3824089 ATTTATAATAATAAA GGTCCCTCCGT AAG ACAGAGAGACC CAATATACTTTATAT rplA 3824911 - 3824222 - | 50S ribosomal protein L1 TERM 5488 3824885 - 3824899 + g 90 -7.2 -5.48303 | TTTATCAACTAATTT TACACT TTC AGTGTA TTTTTTTCCCATTCT rplK 3825393 - 3824968 - | 50S ribosomal protein L11 TERM 5489 3825243 - 3825257 + g 70 -5.7 -4.20354 | opp_overlap 3825228 3825242, overlap 3825228 CAGGAATTATTAATC CTGCT TGGTT AGCAG TTTTAGCATTAAATT nusG 3825988 - 3825464 - | transcription antitermination protein NusG TERM 5490 3825521 - 3825496 - G 77 -8.3 -3.71672 | TCTGATTAAAATCAA GTTCAACAGGG GTTT CCCTGCCAAAC ATATTAACTAAAGCT TERM 5491 3825634 - 3825646 + g 78 -3.3 -5.62288 | CTCCAACCTCAACAT CTACC TCT GGTTG TTTTTCTTTTATTCC TERM 5492 3825847 - 3825862 + g 72 -7.6 -3.58905 | CTTTAACTTCAACCT GTTCCT CCAT AGGAAC TTGTATATCAAAAAT secE 3826262 - 3826035 - | preprotein translocase subunit SecE rpmG 3826461 - 3826312 - | 50S ribosomal protein L33 TERM 5493 3826494 - 3826504 + r 73 -5.4 -4.8855 | opp_overlap 3826485, overlap 3826485 ACATAACCTATATGT GTAG GTT CTAC TTCTTTTTATTTTTT TERM 5494 3826649 - 3826626 - R 86 -9.6 -4.1585 | opp_overlap 3826620, overlap 3826617 TCATAACCCTTAAAA GGACTAGGTC TAGA AACCCAGTCC CTATAATTTCAAATT tuf-2 3827856 - 3826663 - | elongation factor Tu TERM 5495 3828066 - 3828082 + r 80 -9.5 -3.22475 | opp_overlap 3828069, overlap 3828064 TCGAACCCGCGGCAA CTAGCTT GGG AAGCTAG TGTTCTACCACTGAA sigH 3828813 - 3828172 - | RNA polymerase factor sigma-70 CLI_3684 3829396 - 3828887 - | hypothetical protein TERM 5496 3829187 - 3829200 + g 76 -2.5 -5.53079 | TGTAAACACCACTAT TAAAT TATC ATTTA TTTTTTCTGTATTTT CLI_3685 3830172 - 3829399 - | RNA methyltransferase TERM 5497 3829479 - 3829493 + g 83 -8.6 -4.18197 | opp_overlap 3829471 TAAGAGATGTTATAT TCCCAA GCA TTGGGA TTTTAACTAAAACAT TERM 5498 3829729 - 3829747 + g 79 -7.4 -4.46675 | opp_overlap 3829728 3829730, overlap 3829730 AGATGTTTTATAAAC AGTAGGAG TAA CTCCTACA TTTCTTCTCTTAGGT TERM 5499 3829730 - 3829746 + g 87 -10.9 -3.26921 | opp_overlap 3829728 3829730, overlap 3829729 GATGTTTTATAAACA GTAGGAG TAA CTCCTAC ATTTCTTCTCTTAGG TERM 5500 3829746 - 3829730 - G 87 -10.9 -3.5241 | opp_overlap 3829730 3829729, overlap 3829728 GATGTTTTATAAACA GTAGGAG TAA CTCCTAC ATTTCTTCTCTTAGG thyX 3830927 - 3830175 - | FAD-dependent thymidylate synthase TERM 5501 3830253 - 3830265 + g 71 -7.7 -3.5393 | overlap 3830248 GGACATTTTTCCTTC TGGAC AAG GTCCA TTTACGCAACCTGGT CLI_3687 3831357 - 3830917 - | RNase3 domain-containing protein cysS 3832803 - 3831406 - | cysteinyl-tRNA synthetase ilvA 3834049 - 3832832 - | threonine dehydratase TERM 5502 3833479 - 3833493 + g 74 -8.6 -3.27923 | CTGGCTTTATGGATT TAGCTG CTA CAGCTA TTCCTGATATTAGCC CLI_3690 3835758 - 3834121 - | putative prolyl-tRNA synthetase TERM 5503 3834565 - 3834549 - G 70 -8.1 -3.21099 | opp_overlap 3834549 TTCCTTTATTATCAA TGAATGT AGC ACATTCA TTTTTTATTAAGTTT TERM 5504 3834549 - 3834565 + g 95 -8.1 -5.52096 | opp_overlap 3834549 TTCCTTTATTATCAA TGAATGT AGC ACATTCA TTTTTTATTAAGTTT TERM 5505 3835555 - 3835568 + g 85 -2.4 -6.0458 | ATAAGGTATGGATAT TTGG GAACCG CCAA TTTTTTTTGATTTAT TERM 5506 3835865 - 3835835 - R 100 -11.3 -4.26393 | opp_overlap 3835835 3835840, overlap 3835840 CATACAATATATAAA TAAAACTCGCCCC TTATT AGGACGAGTTTTA TTGCTAAGTTAGCTT TERM 5507 3835835 - 3835865 + r 72 -8.4 -3.22656 | opp_overlap 3835835 3835840, overlap 3835840 CATACAATATATAAA TAAAACTCGCCC CTTATTA GGACGAGTTTTA TTGCTAAGTTAGCTT TERM 5508 3835860 - 3835840 - R 80 -6.8 -5.08878 | opp_overlap 3835835 3835840, overlap 3835835 AATATATAAATAAAA CTCGCCCC TTATT AGGACGAG TTTTATTGCTAAGTT TERM 5509 3835868 - 3835878 + r 71 -5.4 -4.59207 | AGGACGAGTTTTATT GCTA AGT TAGC TTTTCTAATATTTGT ispD 3836558 - 3835869 - | 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase CLI_3692 3837660 - 3836560 - | PIN/TRAM domain-containing protein TERM 5510 3837674 - 3837701 + H 100 -11.6 -4.28589 | opp_overlap 3837700, overlap 3837700 ATCCATTTCACCTCC TCTTAATAATTG TTAA CAATTATTAAGA TTTTCAATCCTTTTT CLI_3693 3838065 - 3838463 + | hypothetical protein TERM 5511 3838454 - 3838511 + T 100 -19.7 -4.30793 | opp_overlap 3838461 3838465 ATTAGGCAAATATAG TATGAGATAAAGTATAGCACAAAGTAT TAAA ATACTTTGTGCTATACTTTATCTAGCA TTATTTGTTCTCTAA TERM 5512 3838504 - 3838461 - T 100 -23 -2.86722 | opp_overlap 3838454, overlap 3838465 AAATATAGTATGAGA TAAAGTATAGCACAAAGTAT TAAA ATACTTTGTGCTATACTTTA TCTAGCATTATTTGT TERM 5513 3838500 - 3838465 - T 100 -19.4 -4.10566 | opp_overlap 3838454, overlap 3838461 ATAGTATGAGATAAA GTATAGCACAAAGTAT TAAA ATACTTTGTGCTATAC TTTATCTAGCATTAT CLI_3694 3839556 - 3838495 - | DNA integrity scanning protein DisA radA 3840933 - 3839575 - | DNA repair protein RadA TERM 5514 3840006 - 3840033 + g 71 -8.6 -2.83112 | overlap 3840010 3840012 CTTTCGTTTCACTTA CCAATGCTTGTA TTTC TATAAGTATTGG TCTAGTCCCTTCCAT TERM 5515 3841033 - 3841006 - R 100 -11.6 -5.48303 | opp_overlap 3841010 3841013 ATAATTTTAAAAAAA CCAATAATTAAA TAAA TTTAATTATTGG CTTAAAATTAAATTC clpC 3843489 - 3841054 - | negative regulator of genetic competence MecB/ClpC CLI_3697 3844534 - 3843491 - | ATP:guanido phosphotransferase TERM 5516 3843747 - 3843722 - G 76 -9.1 -3.1634 | opp_overlap 3843717 3843715 CTCTAAATTATCTAA TAGTATTGCTG ATTT CAGCAATGCTA AAGATCTATATATTT CLI_3698 3845066 - 3844539 - | UVR domain-containing protein TERM 5517 3844680 - 3844695 + g 71 -7.6 -3.38378 | overlap 3844679 3844691 TTTTATTATATATTG TCCTGA TTTT TCAGGA ATTTTTCCCGTATGC ctsR 3845553 - 3845089 - | transciptional repressor CtsR CLI_3700 3846179 - 3845949 - | hypothetical protein TERM 5518 3846480 - 3846534 + r 100 -29.4 -4.75372 | opp_overlap 3846480 3846485 3846498, overlap 3846485 AATAAAAACACTGAA TAAAATATAGTATAAAAATCACCTAG AAA CTAGGTGATTTTTATACTATATTTTA TTTTTACTAGATAAT TERM 5519 3846534 - 3846480 - R 100 -29.4 -3.35342 | opp_overlap 3846480 3846485, overlap 3846485 3846498 AATAAAAACACTGAA TAAAATATAGTATAAAAATCACCTAG AAA CTAGGTGATTTTTATACTATATTTTA TTTTTACTAGATAAT TERM 5520 3846485 - 3846529 + r 100 -24.9 -5.3104 | opp_overlap 3846480 3846485 3846498, overlap 3846480 AAACACTGAATAAAA TATAGTATAAAAATCACCTAG AAA CTAGGTGATTTTTATACTATA TTTTATTTTTACTAG TERM 5521 3846529 - 3846485 - R 100 -24.9 -4.7268 | opp_overlap 3846485 3846480, overlap 3846480 3846498 AAACACTGAATAAAA TATAGTATAAAAATCACCTAG AAA CTAGGTGATTTTTATACTATA TTTTATTTTTACTAG TERM 5522 3846516 - 3846498 - R 100 -11.8 -4.97666 | opp_overlap 3846485 3846480, overlap 3846485 3846480 AATATAGTATAAAAA TCACCTAG AAA CTAGGTGA TTTTTATACTATATT fusA-2 3848597 - 3846525 - | elongation factor G TERM 5523 3848712 - 3848742 + r 71 -5.6 -4.6635 | opp_overlap 3848712 CACAAAAAATAAAAA GCTATTAAATATAT ATT ACATATCTAATAGC TTTTATTACAACTTT TERM 5524 3848742 - 3848712 - R 100 -10 -5.8096 | opp_overlap 3848712 CACAAAAAATAAAAA GCTATTAAATATAT ATT ACATATCTAATAGC TTTTATTACAACTTT TERM 5525 3850726 - 3850742 + r 71 -6.5 -4.08767 | GAGCGGACGAACCTT CCTCAGG AAA CCTTAGG TTTTCGGCCAATAAG TERM 5526 3851548 - 3851559 + r 75 -7.2 -4.2354 | AGGTTCTATTTCACT CCCC TTCC GGGG TTCTTTTCACCTTTC TERM 5527 3851622 - 3851637 + r 81 -10.4 -2.71011 | GTAGTATTTAGCCTT GGGAGG TGGT CCTCCC TGCTTCCCACAAGGT TERM 5528 3851788 - 3851805 + r 76 -8.5 -3.695 | opp_overlap 3851787 GATCTATCCACAACC CCAGAAA CAAG TTTCTGG TTTGGGCTCTTTCCC TERM 5529 3851932 - 3851947 + r 72 -9 -2.69489 | opp_overlap 3851910 3851932 3851934, overlap 3851929 ATTCAGTGCATGATA CATGGG GTTA CCCATG TGAGTTTCCTCATTC TERM 5530 3851947 - 3851932 - R 73 -9 -2.79915 | opp_overlap 3851932 3851929, overlap 3851910 3851934 ATTCAGTGCATGATA CATGGG GTTA CCCATG TGAGTTTCCTCATTC TERM 5531 3852328 - 3852347 + r 75 -9.2 -2.65808 | opp_overlap 3852319 3852316, overlap 3852325 3852325 AAAGGAGGTGATCCA GCCGCAGG TTCT CCTACGGC TACCTTGTTACGACT TERM 5532 3854037 - 3854021 - R 83 -3.6 -5.84381 | opp_overlap 3854021 TTAGTAATAAAAAAA CAGTCC TTAAT GGCCTG TTTAAATGGTGGAGA TERM 5533 3854077 - 3854093 + r 72 -8.7 -2.62616 | overlap 3854048 TCGAACTCCTGACCC CCTGCTT GCA AGGCAGG TGCTCTCCCAACTGA TERM 5534 3855964 - 3855980 + r 71 -6.5 -4.08767 | GAGCGGACGAACCTT CCTCAGG AAA CCTTAGG TTTTCGGCCAATAAG TERM 5535 3856786 - 3856797 + r 75 -7.2 -4.2354 | AGGTTCTATTTCACT CCCC TTCC GGGG TTCTTTTCACCTTTC TERM 5536 3856860 - 3856875 + r 81 -10.4 -2.71011 | GTAGTATTTAGCCTT GGGAGG TGGT CCTCCC TGCTTCCCACAAGGT TERM 5537 3857026 - 3857043 + r 76 -8.5 -3.695 | opp_overlap 3857025 GATCTATCCACAACC CCAGAAA CAAG TTTCTGG TTTGGGCTCTTTCCC TERM 5538 3857170 - 3857185 + r 72 -9 -2.69489 | opp_overlap 3857148 3857170 3857172, overlap 3857167 ATTCAGTGCATGATA CATGGG GTTA CCCATG TGAGTTTCCTCATTC TERM 5539 3857185 - 3857170 - R 73 -9 -2.79915 | opp_overlap 3857170 3857167, overlap 3857148 3857172 ATTCAGTGCATGATA CATGGG GTTA CCCATG TGAGTTTCCTCATTC TERM 5540 3857501 - 3857523 + r 72 -7.9 -3.50853 | overlap 3857503 AGAGAATTCAGCCTT TAGAAAGAA TTTTC TTCTTTCTA TTCTCCTTAGAAAGG TERM 5541 3857549 - 3857568 + r 75 -9.2 -2.65808 | opp_overlap 3857540 3857537, overlap 3857546 3857546 AAAGGAGGTGATCCA GCCGCAGG TTCT CCTACGGC TACCTTGTTACGACT TERM 5542 3859189 - 3859204 + r 80 -6.2 -5.1361 | CTTATCAAATTTGTT GTTCTT TGTC AAGAAC TTTTTTCAAATTTGT TERM 5543 3859476 - 3859438 - R 80 -2.7 -6.01369 | gap 1, opp_overlap 3859469, overlap 3859442 TAAAGAATAAAAAAA GAAT-CTATCAGTATTAA TATT TTAAAACCAATAGGATTC TTCTATATCTAATAT murD 3860985 - 3859609 - | UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase TERM 5544 3861278 - 3861289 + G 75 -4.4 -5.20633 | ATAAATTTTTTATTC TTCC TATT GGAA TTTTTATCTCTTTTT CLI_3725 3861130 - 3861333 + | hypothetical protein TERM 5545 3861597 - 3861619 + T 100 -9.2 -5.73563 | CCCTATTTCATTCTA TCAGGTGATT CGG ATTCACCTGA TTTTTTTGCTTTAAT TERM 5546 3861749 - 3861713 - T 100 -18.5 -4.16205 | opp_overlap 3861713 3861721 TATAATTAAATTAAA GCTATGAATTATAAAAT AAT ATTTTATAATTCATAGC TTCTTAATTCAAATA TERM 5547 3861713 - 3861749 + T 100 -18.5 -3.8186 | opp_overlap 3861713, overlap 3861721 TATAATTAAATTAAA GCTATGAATTATAAAAT AAT ATTTTATAATTCATAGC TTCTTAATTCAAATA glyS 3863200 - 3861809 - | glycyl-tRNA synthetase TERM 5548 3862246 - 3862264 + g 76 -9 -3.44206 | TTTCTTTAGTTGTTG GATCTAAA TAG TTTAGATC TTCTCCTGAATGTTC TERM 5549 3862631 - 3862643 + g 76 -6.3 -4.66833 | AACTTTTTTTCTAGA TGTTC TTT GAACA TTTTTAAAATTAACA lysS 3865034 - 3863520 - | lysyl-tRNA synthetase greA-2 3865535 - 3865053 - | transcription elongation factor GreA CLI_3729 3866493 - 3865666 - | hypothetical protein CLI_3730 3867514 - 3866543 - | dihydrouridine synthase CLI_3731 3868300 - 3867524 - | pantothenate kinase TERM 5550 3867646 - 3867624 - G 89 -9.2 -4.31379 | opp_overlap 3867624 ATTAATTTAGCAAAA CCTCCTGTAG CAA CTACAAAAGG TTCCTCTTCCCCTAG TERM 5551 3868368 - 3868349 - R 73 -7.1 -4.11501 | opp_overlap 3868349 TTAAATACAATGAAA GAGCAGC TTTGCC GCTGCCC TTTATGCTTGATTTA fhs 3870128 - 3868455 - | formate--tetrahydrofolate ligase TERM 5552 3869916 - 3869937 + g 82 -8.7 -3.9534 | TGTAACTGTGGATTT TCCTTCTCC TGCT GGAGTAGGA TTTATAGCTGTAACT TERM 5553 3870300 - 3870323 + r 73 -5.3 -4.79955 | opp_overlap 3870300, overlap 3870295 TTAATATGTAAAAAA GAGCAGATG ATAAAA CATCTACTC TTTTATTCTAACTAT TERM 5554 3870323 - 3870300 - R 93 -7.5 -5.1615 | opp_overlap 3870295 3870300 TTAATATGTAAAAAA GAGCAGATG ATAAAA CATCTACTC TTTTATTCTAACTAT ftsH-2 3872136 - 3870331 - | ATP-dependent metalloprotease FtsH TERM 5555 3871691 - 3871701 + g 74 -6.8 -4.32046 | overlap 3871686 TTCTTATCCGGTGTG GCCA TTT TGGC TTTACTTTTTCCAAA hpt-2 3872763 - 3872218 - | hypoxanthine phosphoribosyltransferase tilS 3874153 - 3872747 - | tRNA(Ile)-lysidine synthetase TERM 5556 3873985 - 3874009 + g 70 -4.4 -4.95167 | CTCCTCTAACACCAT GATTTATATG AGCCA CATATATATC TTTTATTCTTAATTG spoIIE 3876689 - 3874302 - | stage II sporulation protein E TERM 5557 3877010 - 3876983 - R 100 -14.4 -5.69473 | opp_overlap 3876983 TATATTATAAAAAAA GAGAGATTCTAT TTAA ATAGAATCTCTC TTTTTATGTGGTAGC TERM 5558 3876983 - 3877010 + r 100 -14.4 -5.00895 | opp_overlap 3876983 TATATTATAAAAAAA GAGAGATTCTAT TTAA ATAGAATCTCTC TTTTTATGTGGTAGC TERM 5559 3877828 - 3877796 - R 73 -7.1 -4.10925 | opp_overlap 3877801 3877806, overlap 3877806 ATACATTTTTTAAAA TAAATAAAAAGGCCC CTA AGGCCTTTTATTTTA ATAGCTTTTCTTACT TERM 5560 3877801 - 3877823 + r 70 -6.3 -4.34771 | opp_overlap 3877796 3877806, overlap 3877806 TTTTTTAAAATAAAT AAAAAGGCC CCTAA GGCCTTTTA TTTTAATAGCTTTTC TERM 5561 3877818 - 3877806 - R 88 -6.9 -5.59962 | opp_overlap 3877806 3877801, overlap 3877796 TAAAATAAATAAAAA GGCCC CTA AGGCC TTTTATTTTAATAGC TERM 5562 3877806 - 3877818 + r 80 -6.2 -5.13722 | opp_overlap 3877796 3877806, overlap 3877801 TAAAATAAATAAAAA GGCC CCTAA GGCC TTTTATTTTAATAGC CLI_3749 3878230 - 3877826 - | hypothetical protein CLI_3750 3878561 - 3878292 - | putative cell division protein FtsL CLI_3751 3879054 - 3878656 - | hypothetical protein TERM 5563 3878766 - 3878737 - G 93 -8.2 -5.07567 | opp_overlap 3878730 TGATATTCTAAAAAA TTTATTTATGTT TTGGAC AACATAAATAAA TATAGGATTTAAATA yabP 3879359 - 3879069 - | sporulation protein YabP TERM 5564 3879469 - 3879421 - R 82 -8.5 -4.49981 | opp_overlap 3879421, overlap 3879426 TATATTACTATAAAA TAAAAGGTTCTAAAAAATCGTAT TGT AAAAATTTTTTTAGAACCTTTTA TTTTGAAACTTATAT TERM 5565 3879464 - 3879426 - R 70 -4 -5.20781 | opp_overlap 3879421, overlap 3879421 TACTATAAAATAAAA GGTTCTAAAAAATCGTAT TGT AAAAATTTTTTTAGAACC TTTTATTTTGAAACT CLI_3753 3879718 - 3879479 - | S4 domain-containing protein TERM 5566 3879774 - 3879757 - R 83 -4.1 -5.85425 | TAAATAAACAAAAAA CCCAGAT TAAA ACCTAGG TTTTTTATATTTATT hup 3880070 - 3879792 - | DNA-binding protein HU TERM 5567 3880109 - 3880090 - R 77 -8 -4.08767 | opp_overlap 3880083 3880080 3880090 3880089 GTTACCTCCTTAAAA TTAAGTAG TTAC CTACTTAA AGTTTTATACATTAT CLI_3755 3881643 - 3880198 - | MazG family protein spoVB-2 3883193 - 3881658 - | stage V sporulation protein B TERM 5568 3883305 - 3883288 - R 100 -11.3 -4.71828 | opp_overlap 3883288 AGTTTATTAATAAAA CCTGTGC TTAA GCACAGG TTCATATTAAGTATA TERM 5569 3883288 - 3883305 + r 93 -11.3 -3.38786 | opp_overlap 3883288 AGTTTATTAATAAAA CCTGTGC TTAA GCACAGG TTCATATTAAGTATA CLI_3757 3883877 - 3883326 - | stage V sporulation protein T TERM 5570 3884033 - 3884075 + r 100 -13.9 -3.4745 | opp_overlap 3884043, overlap 3884043 TTTAAAATTTTCTTC CAAATAAAAATCATGTGTA ATTAA TACACATGATTTTTATTTA TTATAATAGATTTTT TERM 5571 3884065 - 3884043 - R 100 -9.3 -5.27335 | opp_overlap 3884043 3884033 TCTTCCAAATAAAAA TCATGTGTA ATTAA TACACATGA TTTTTATTTATTATA TERM 5572 3884043 - 3884065 + r 100 -9.3 -5.50774 | opp_overlap 3884043, overlap 3884033 TCTTCCAAATAAAAA TCATGTGTA ATTAA TACACATGA TTTTTATTTATTATA prsA-1 3885086 - 3884076 - | peptidylprolyl isomerase mfd 3888676 - 3885170 - | transcription-repair coupling factor pth 3889273 - 3888704 - | peptidyl-tRNA hydrolase TERM 5573 3889368 - 3889330 - R 100 -10.6 -4.3767 | opp_overlap 3889330 3889334, overlap 3889334 TTATACTATAATAAA TAAATAATAAAGAGACTT ATT AGGTCCCTTTACTATTTA TTATATATTATATTT TERM 5574 3889330 - 3889368 + r 76 -8.4 -3.77486 | opp_overlap 3889330 3889334, overlap 3889334 TTATACTATAATAAA TAAATAATAAAGAGACTT ATT AGGTCCCTTTACTATTTA TTATATATTATATTT TERM 5575 3889364 - 3889334 - R 81 -7 -4.7458 | opp_overlap 3889334 3889330, overlap 3889330 ACTATAATAAATAAA TAATAAAGAGACTT ATT AGGTCCCTTTACTA TTTATTATATATTAT CLI_3761 3890555 - 3889383 - | putative protease CLI_3762 3891999 - 3890590 - | sensor histidine kinase CLI_3763 3892686 - 3892000 - | DNA-binding response regulator TERM 5576 3892288 - 3892300 + g 74 -6.3 -4.48987 | opp_overlap 3892287 TAGCTGTTCAAAATT TAAGG CTT CCTTA TTTTCATTATCCACA TERM 5577 3892805 - 3892857 + r 93 -11.9 -3.20226 | gap 1, opp_overlap 3892813 3892817, overlap 3892813 3892817 TTACAAATAGTTAAC TATATAAATAAAGTACCCATAGAA TTTATT TTCTATGAGTACTTTATTT-TATA TGTATTGATTAATCT TERM 5578 3892813 - 3892850 + r 100 -11.6 -4.68124 | opp_overlap 3892813 3892817, overlap 3892805 3892817 AGTTAACTATATAAA TAAAGTACCCATAGAA TTTATT TTCTATGAGTACTTTA TTTTATATGTATTGA TERM 5579 3892850 - 3892813 - R 100 -13.8 -4.13872 | opp_overlap 3892805 3892813 3892817, overlap 3892817 AGTTAACTATATAAA TAAAGTACCCATAGAA TTTATT TTCTATGAGTACTTTA TTTTATATGTATTGA TERM 5580 3892817 - 3892846 + r 86 -8 -4.85653 | opp_overlap 3892813 3892817, overlap 3892813 3892805 AACTATATAAATAAA GTACCCATAGAA TTTATT TTCTATGAGTAC TTTATTTTATATGTA TERM 5581 3892846 - 3892817 - R 100 -10.2 -4.64952 | opp_overlap 3892817 3892813 3892805, overlap 3892813 AACTATATAAATAAA GTACCCATAGAA TTTATT TTCTATGAGTAC TTTATTTTATATGTA prsA-2 3893825 - 3892866 - | ribose-phosphate pyrophosphokinase glmU 3895219 - 3893846 - | UDP-N-acetylglucosamine pyrophosphorylase TERM 5582 3894916 - 3894906 - G 71 -6.8 -3.91084 | TCATTGGTAATTAAA GGAG CAT CTCC TGTAAATATAGCTAC TERM 5583 3895345 - 3895376 + r 90 -11.8 -3.02865 | opp_overlap 3895346 3895353, overlap 3895353 TAGAATAGTTCAAAA ATAAAAAAGGAGCT TATA AGCTCCTTTTTTAG ATATTTTATTCTTGA TERM 5584 3895375 - 3895346 - R 100 -15.3 -4.67556 | opp_overlap 3895345 3895353, overlap 3895353 AGAATAGTTCAAAAA TAAAAAAGGAGCT TATA AGCTCCTTTTTTA GATATTTTATTCTTG TERM 5585 3895368 - 3895353 - R 100 -9 -5.93252 | opp_overlap 3895345 3895353, overlap 3895346 TTCAAAAATAAAAAA GGAGCT TATA AGCTCC TTTTTTAGATATTTT TERM 5586 3895353 - 3895368 + r 100 -9 -5.19916 | opp_overlap 3895353 3895346, overlap 3895345 TTCAAAAATAAAAAA GGAGCT TATA AGCTCC TTTTTTAGATATTTT spoVG 3895669 - 3895382 - | regulatory protein SpoVG TERM 5587 3895504 - 3895515 + g 77 -5.8 -4.91109 | CTATATCCTTATATT CACC ATCT GGTG TTTTTCTACTAGGCA purR 3896587 - 3895772 - | purine operon repressor murC 3896787 - 3898163 + | UDP-N-acetylmuramate--L-alanine ligase CLI_3769 3898228 - 3898536 + | hypothetical protein TERM 5588 3898691 - 3898711 + F 100 -9.1 -6.18768 | opp_overlap 3898691 3898694 TGTCACCCCGACCAA GAACTACTT TAA AAGTGGTTC TTTTTTTTATATTTT TERM 5589 3898900 - 3898915 + G 70 -6.2 -4.11404 | opp_overlap 3898899 ACAAGGAAAATTTAT GTAGAA TAAT TTCTAC TTTATGTGGTGTAGA CLI_3772 3898782 - 3900131 + | [Fe] hydrogenase TERM 5590 3900329 - 3900314 - g 72 -4.7 -4.87133 | overlap 3900318 ATTTTTTAAATAAAA GGAAC TTAAAG GTTCC TCAAGATTTAAAAGA CLI_3773 3900217 - 3900861 + | haloacid dehalogenase, IA family protein CLI_3774 3901136 - 3901534 + | hypothetical protein TERM 5591 3901579 - 3901537 - T 70 -7.9 -3.30797 | opp_overlap 3901539 3901560 3901564, overlap 3901535 3901538 TCTAAATTTATAAGA TTTCTCCTAGATTTCATCA TATCT TTATGAAATCTAGGAGATT TAATTAATTATACTT TERM 5592 3901578 - 3901538 - T 83 -11.4 -2.57996 | opp_overlap 3901539 3901560 3901564, overlap 3901537 3901535 CTAAATTTATAAGAT TTCTCCTAGATTTCATCA TATCT TTATGAAATCTAGGAGAT TTAATTAATTATACT TERM 5593 3901539 - 3901577 + T 100 -14.9 -4.02535 | opp_overlap 3901538 3901537 3901535, overlap 3901560 3901564 TAAATTTATAAGATT TCTCCTAGATTTCATCA TATCT TTATGAAATCTAGGAGA TTTAATTAATTATAC CLI_3775 3902320 - 3901601 - | 2-phosphosulfolactate phosphatase CLI_3776 3903297 - 3902365 - | radical SAM family protein TERM 5594 3903319 - 3903348 + r 100 -10.3 -5.75342 | gap 1, opp_overlap 3903319 TTCCTCCCAAAAAAA GTATCTGTGA-ATA TTA TATGTCACAGATAC TTTTTTTTCAAAACA TERM 5595 3903348 - 3903319 - R 100 -10.3 -5.40072 | gap 1, opp_overlap 3903319 TTCCTCCCAAAAAAA GTATCTGTGA-ATA TTA TATGTCACAGATAC TTTTTTTTCAAAACA CLI_3777 3904492 - 3903365 - | putative phage head-tail adaptor TERM 5596 3904559 - 3904576 + H 70 -4.3 -5.08178 | AAAAGAAAATTTAAT TAAAAAT CATT ATTTTTA TTTTTATATATATAT CLI_3778 3904631 - 3905677 + | hypothetical protein CLI_3779 3905710 - 3906606 + | radical SAM domain-containing protein TERM 5597 3906686 - 3906650 - T 78 -5.3 -5.11389 | opp_overlap 3906650 ATAACATAAATAAAA GCTATGAAATTTAGATA TTA TCTTTATATTTCATAGC TTTCTCAAAATAAAA TERM 5598 3906650 - 3906686 + T 75 -7.5 -3.87815 | opp_overlap 3906650 ATAACATAAATAAAA GCTATGAAATTTAGATA TTA TCTTTATATTTCATAGC TTTCTCAAAATAAAA CLI_3780 3908545 - 3906749 - | methyl-accepting chemotaxis protein TERM 5599 3908150 - 3908173 + g 76 -6.1 -4.64766 | overlap 3908151 AAACATTCCTCTTTT GGAGCTATA ACTGAA TATAGCTTC TTTTTCAGATATAGG TERM 5600 3908655 - 3908684 + r 82 -9.7 -3.35962 | opp_overlap 3908661 3908666, overlap 3908658 3908659 ACAAAGCTTTATCCT TAATTATAAAATA TATT TATTTTATAATTA TAATTTTTATCTAAA TERM 5601 3908658 - 3908681 + r 70 -7 -3.79689 | opp_overlap 3908661 3908666, overlap 3908655 3908659 AAGCTTTATCCTTAA TTATAAAATA TATT TATTTTATAA TTATAATTTTTATCT TERM 5602 3908778 - 3908731 - R 81 -5.3 -5.40072 | gap 1, opp_overlap 3908735, overlap 3908735 CCGTTTTTAAAAAAA TAAACACTATC-AACATTATTA AACTA CAATAATATTTGATAGTGTTTT AATGGTTTTTTATTT TERM 5603 3908774 - 3908735 - R 80 -6.1 -5.20328 | gap 1, opp_overlap 3908735, overlap 3908731 TTTTAAAAAAATAAA CACTATC-AACATTATTA AACTA CAATAATATTTGATAGTG TTTTAATGGTTTTTT CLI_3781 3909510 - 3908848 - | DNA-binding protein CLI_3782 3909898 - 3909524 - | hypothetical protein CLI_3783 3910434 - 3909916 - | putative peptidyl-prolyl cis-trans isomerase, cyclophilin-type murI 3911354 - 3910581 - | glutamate racemase TERM 5604 3913231 - 3913189 - g 72 -6.5 -4.33819 | opp_overlap 3913189 ATTATGTAGAAGAAA TCAGAAGCTTTTCTCAATT ACATG AAGTAAACAAAGCTTCTGA TTTAGATATTCATAA TERM 5605 3913380 - 3913354 - g 100 -12.6 -3.80014 | opp_overlap 3913350 ATAGCGATTATGAAA CTATTTCTAATT TAC AATTAGAAATAG ATAAAAAAATGAAAT CLI_3785 3911547 - 3913445 + | putative glutamine synthetase TERM 5606 3913486 - 3913441 - T 100 -19.5 -2.89323 | opp_overlap 3913443 3913446 3913448 3913453, overlap 3913443 3913448 3913453 AAAATCTTTTAGATA TATAAAATAAAAGCACACCTA GTAT CAGGTGTGCTTTTATCTTATA ATATTAAAATTCTTT TERM 5607 3913443 - 3913484 + T 100 -14.8 -2.76313 | opp_overlap 3913443 3913441 3913448 3913453, overlap 3913446 3913448 3913453 AATCTTTTAGATATA TAAAATAAAAGCACACCT AGTATC AGGTGTGCTTTTATCTTA TAATATTAAAATTCT TERM 5608 3913484 - 3913443 - T 100 -17.7 -2.99319 | opp_overlap 3913443 3913446 3913448 3913453, overlap 3913441 3913448 3913453 AATCTTTTAGATATA TAAAATAAAAGCACACCTA GTAT CAGGTGTGCTTTTATCTTA TAATATTAAAATTCT TERM 5609 3913446 - 3913481 + T 95 -12.1 -3.52341 | opp_overlap 3913443 3913441 3913448 3913453, overlap 3913443 3913448 3913453 CTTTTAGATATATAA AATAAAAGCACACCT AGTATC AGGTGTGCTTTTATC TTATAATATTAAAAT TERM 5610 3913479 - 3913448 - T 100 -15.4 -4.64844 | opp_overlap 3913446 3913443 3913448 3913453, overlap 3913443 3913441 3913453 TTTAGATATATAAAA TAAAAGCACACCTA GTAT CAGGTGTGCTTTTA TCTTATAATATTAAA TERM 5611 3913448 - 3913479 + T 100 -14.7 -3.33348 | opp_overlap 3913448 3913443 3913441 3913453, overlap 3913446 3913443 3913453 TTTAGATATATAAAA TAAAAGCACACCT AGTATC AGGTGTGCTTTTA TCTTATAATATTAAA TERM 5612 3913453 - 3913474 + T 100 -10.2 -4.75289 | opp_overlap 3913453 3913448 3913443 3913441, overlap 3913448 3913446 3913443 ATATATAAAATAAAA GCACACCT AGTATC AGGTGTGC TTTTATCTTATAATA TERM 5613 3913474 - 3913453 - T 100 -10.9 -5.24647 | opp_overlap 3913448 3913446 3913443 3913453, overlap 3913448 3913443 3913441 ATATATAAAATAAAA GCACACCTA GTAT CAGGTGTGC TTTTATCTTATAATA CLI_3786 3914038 - 3913490 - | hypothetical protein TERM 5614 3914467 - 3914455 - g 71 -6.9 -3.87792 | opp_overlap 3914455 3914456, overlap 3914453 3914450 AAATTAAAAATAACA GGAGG TAA CCCCC TCTTTGGAAAAGTTG murA-2 3914434 - 3915687 + | UDP-N-acetylglucosamine 1-carboxyvinyltransferase TERM 5615 3915671 - 3915687 + F 72 -8.1 -3.1996 | GATCTTTAGGGGCTA CTATAGT TAG ACTATAG TTAAGTTACAATTTA TERM 5616 3916131 - 3916121 - g 91 -5.4 -5.93252 | TCTAAAAATAAAAAA GCAA GCA TTGC TACAGATTTAGGTGT CLI_3788 3915713 - 3916498 + | metallo-beta-lactamase family protein TERM 5617 3916875 - 3916859 - g 77 -4.5 -5.24129 | opp_overlap 3916862 TTTTTCTATAAAAAA CAACATA GCT TATGTTA ATTTAAGTAGTGAAG CLI_3789 3916515 - 3917084 + | putative lipoprotein CLI_3790 3917099 - 3917602 + | hypothetical protein TERM 5618 3917663 - 3917717 + F 77 -7.4 -4.44915 | opp_overlap 3917666, overlap 3917665 3917672 3917710 TATTTAATAAATATG GAACTAAGAGGTTTATCATTAAATAA AAT TTATTTATTGGTAGGCCTTTTAGAGC TTTTCTAAATACTTA TERM 5619 3917672 - 3917708 + F 78 -7.5 -4.19879 | opp_overlap 3917666, overlap 3917665 3917663 AATATGGAACTAAGA GGTTTATCATTAAATAA AAT TTATTTATTGGTAGGCC TTTTAGAGCTTTTCT CLI_3791 3917781 - 3918260 + | hypothetical protein TERM 5620 3918471 - 3918416 - T 95 -10.9 -3.71687 | opp_overlap 3918416 3918469 GTAAAACAGTGTAAA TTCCTTTATTATGATAAGATTGAAT ATAGCG ATTGGATCTTATCATAATGAAGGAA TTGCTAGCCAGTTCT TERM 5621 3918416 - 3918471 + T 100 -15.3 -3.15758 | opp_overlap 3918416, overlap 3918469 GTAAAACAGTGTAAA TTCCTTTATTATGATAAGATTGAAT ATAGCG ATTGGATCTTATCATAATGAAGGAA TTGCTAGCCAGTTCT CLI_3792 3919919 - 3918702 - | major facilitator family protein CLI_3793 3920590 - 3919955 - | putative NADPH-dependent FMN reductase TERM 5622 3920733 - 3920775 + H 75 -6.5 -4.45517 | opp_overlap 3920725 3920733 3920738 3920762, overlap 3920725 TAAGTAATTTATGAA CTAAACGTTTAGTTTATAA ATATA TAATATACTAAACGTTCAG TTTTGTAAATAGTTT TERM 5623 3920775 - 3920733 - H 75 -8.7 -3.23598 | opp_overlap 3920725 3920733, overlap 3920725 3920738 3920762 TAAGTAATTTATGAA CTAAACGTTTAGTTTATAA ATATA TAATATACTAAACGTTCAG TTTTGTAAATAGTTT TERM 5624 3920822 - 3920812 - H 80 -2.6 -6.09196 | overlap 3920818 TTTAAAACAAAAAAA TATA TAG TATA ATATACGTATAGTTT CLI_3794 3920882 - 3921454 + | TetR family transcriptional regulator CLI_3795 3921701 - 3922087 + | AraC family transcriptional regulator map-2 3922119 - 3922994 + | methionine aminopeptidase, type I TERM 5625 3923056 - 3923009 - T 86 -9.4 -4.08974 | opp_overlap 3923010, overlap 3923010 ACTTCATTATATAAA TTTTAATGCTGCAATTAATCAC TATA GTTTTTAATCGCAGCATTAAAT TTAATATAAAAATAT TERM 5626 3923010 - 3923055 + T 91 -10.7 -3.83502 | opp_overlap 3923009 3923010 CTTCATTATATAAAT TTTAATGCTGCAATTAATCAC TATA GTTTTTAATCGCAGCATTAAA TTTAATATAAAAATA TERM 5627 3923055 - 3923010 - T 93 -12.9 -3.04902 | opp_overlap 3923010, overlap 3923009 CTTCATTATATAAAT TTTAATGCTGCAATTAATCAC TATA GTTTTTAATCGCAGCATTAAA TTTAATATAAAAATA CLI_3797 3923614 - 3923075 - | nitroreductase family protein TERM 5628 3923767 - 3923819 + r 100 -11 -5.15682 | opp_overlap 3923762 3923771 3923773, overlap 3923771 3923773 AATAAATTATTCTTT TAAAGAGGGTATCTCAAAATAAAA GCTAA TTTTATTTTAAGATACCCTATTAA TTTTATTTATATTTT TERM 5629 3923771 - 3923815 + r 100 -11.8 -3.90741 | opp_overlap 3923762 3923771 3923773, overlap 3923767 3923773 AATTATTCTTTTAAA GAGGGTATCTCAAAATAAAA GCTAA TTTTATTTTAAGATACCCTA TTAATTTTATTTATA TERM 5630 3923815 - 3923771 - R 100 -14 -3.54919 | opp_overlap 3923767 3923771 3923773, overlap 3923762 3923773 AATTATTCTTTTAAA GAGGGTATCTCAAAATAAAA GCTAA TTTTATTTTAAGATACCCTA TTAATTTTATTTATA TERM 5631 3923773 - 3923813 + r 100 -14.4 -3.51096 | opp_overlap 3923771 3923773, overlap 3923771 3923767 TTATTCTTTTAAAGA GGGTATCTCAAAATAAAA GCTAA TTTTATTTTAAGATACCC TATTAATTTTATTTA TERM 5632 3923813 - 3923773 - R 100 -16.6 -3.35046 | opp_overlap 3923773 3923771 3923767, overlap 3923771 TTATTCTTTTAAAGA GGGTATCTCAAAATAAAA GCTAA TTTTATTTTAAGATACCC TATTAATTTTATTTA TERM 5633 3925278 - 3925319 + r 95 -10.5 -3.9901 | opp_overlap 3925287, overlap 3925271 3925315 ATAAAGAATTTATCT TTTTAAAAAGCACTAGA CCTAAAAA TCTAGTGCTTTCTAAAA TTATTAATTTTGCTT TERM 5634 3925310 - 3925287 - R 85 -8.2 -4.57569 | opp_overlap 3925278 3925271 TTATCTTTTTAAAAA GCACTAGACC TAAA AATCTAGTGC TTTCTAAAATTATTA prdB-2 3926068 - 3925343 - | D-proline reductase, PrdB subunit CLI_3801 3926286 - 3926095 - | hypothetical protein CLI_3802 3928034 - 3926289 - | glycine/sarcosine/betaine reductase, component B, subunits alpha and beta TERM 5635 3927050 - 3927061 + g 75 -5.8 -4.74518 | CTTCTTTTTCTGCTT CTCC TGCT GGAG TTTCTTTTAATACTT TERM 5636 3928066 - 3928081 + r 73 -7.6 -3.68024 | TTATGCTACTATTTT TCTCGA CAAA TCGAGA TTATATATTGAACAA CLI_3803 3929433 - 3928147 - | respiratory-chain NADH dehydrogenase family protein TERM 5637 3928410 - 3928430 + g 72 -6.1 -4.26463 | overlap 3928412 CTACTCCTACTACAT TGGCTCCCA TAT TGGCAGCTA TTTCTCTTAATCTAT TERM 5638 3928788 - 3928772 - G 81 -9.5 -3.66874 | GCAATTTTAGCCAAA GTCTCTA CAT TAGAGAC AACAGCATTAGCTTC TERM 5639 3931463 - 3931448 - g 76 -6.2 -4.56775 | AGGTGCGGTTAAAAA TTCTAG AATA CTAGAA AGAAAGGTAAGAGAT CLI_3804 3929991 - 3931487 + | hypothetical protein TERM 5640 3931521 - 3931551 + G 90 -7.7 -5.02476 | gap 1, overlap 3931523 3931527 AATACCTTTTAGTTC TGTAGATGGTCCTG GAAA CAGGACCG-CTATA TTTTTTCAGGGATGT TERM 5641 3931523 - 3931549 + G 81 -8.1 -4.13963 | gap 1, overlap 3931521 3931527 TACCTTTTAGTTCTG TAGATGGTCCTG GAAA CAGGACCG-CTA TATTTTTTCAGGGAT TERM 5642 3931527 - 3931546 + G 76 -10 -2.78977 | overlap 3931523 3931521 TTTTAGTTCTGTAGA TGGTCCTG GAAA CAGGACCG CTATATTTTTTCAGG TERM 5643 3932019 - 3932005 - g 76 -8.6 -3.44146 | TCCTTTGACAATGAA GAGCAT AAA ATGCTC ACAAAAAGAAATAAT CLI_3805 3931480 - 3932316 + | radical SAM domain-containing protein TERM 5644 3932382 - 3932418 + F 100 -13.4 -3.91716 | opp_overlap 3932379 3932386 3932389, overlap 3932386 AAATCAAATTTAGTT CAAATAATTAGAGAAG TTTTT CTTCTTTAATTATTTG TTCTTTAAAACATAC TERM 5645 3932386 - 3932414 + F 85 -8.4 -4.56978 | opp_overlap 3932379 3932386 3932389, overlap 3932382 CAAATTTAGTTCAAA TAATTAGAGAAG TTTTT CTTCTTTAATTA TTTGTTCTTTAAAAC TERM 5646 3932492 - 3932504 + F 80 -6.3 -5.14626 | opp_overlap 3932492 TATAGTTTAAATTGA GGTAT TTT ATACC TTTTATTTTGATACT TERM 5647 3932524 - 3932540 + F 100 -10.9 -5.79595 | ATTTTGATACTTTAA CTTTCCC TTT GGGAAAG TTTTTTATTTTACAA CLI_3806 3932732 - 3932983 + | hypothetical protein CLI_3807 3932986 - 3934032 + | biotin synthase TERM 5648 3934239 - 3934249 + G 70 -4 -4.88405 | GAAATCTATATACGG CAAT AGA ATTG TTTTATTTGCCCCTT CLI_3808 3934033 - 3935409 + | thiamine biosynthesis protein ThiH TERM 5649 3936409 - 3936393 - g 71 -3.1 -5.252 | CATGTGGATAAAAAA TTAAACT ATG AATTTAA AATGGGTGGAGATTT TERM 5650 3936568 - 3936609 + G 78 -9.8 -3.06133 | opp_overlap 3936557 3936568 3936570, overlap 3936570 TAATCTCCTATTTAA CAGGTATATTAGATAG AAGTATAGAA CTATTTAATATACCTG TTAAATAAAAAATTG CLI_3809 3935418 - 3936617 + | GTP-binding protein TERM 5651 3936654 - 3936691 + F 100 -13.1 -4.98616 | opp_overlap 3936654 ATCTAACATAAAAAA TACACTTAATAAACAAA CTCA TATGTTTATTAAGTGTA TTTTTCATATTTTCG TERM 5652 3936691 - 3936654 - f 100 -13.1 -5.48063 | opp_overlap 3936654 ATCTAACATAAAAAA TACACTTAATAAACAAA CTCA TATGTTTATTAAGTGTA TTTTTCATATTTTCG TERM 5653 3938276 - 3938253 - g 73 -9 -3.18023 | overlap 3938251 GTATTACCATGAATA TACTTGCTAT GGCT ACAGCAAGTA AGAAGTTTAATTCTA CLI_3810 3936932 - 3938305 + | sodium:solute symporter family protein TERM 5654 3938479 - 3938450 - f 73 -2.3 -5.72118 | gap 1, overlap 3938478 AAAAAAGAGAAAAAA TACTCCACCTTCTG TAC CAGAAG-TAAAATA ATTTTTAGAGTATAA TERM 5655 3938517 - 3938483 - f 72 -8.8 -2.5111 | opp_overlap 3938487, overlap 3938482 3938478 3938492 AGAAGTAAAATAATT TTTAGAGTATAAAGTT TAA AACTTTATACTCTTTA TTTTATTATATATTA TERM 5656 3938487 - 3938513 + F 100 -14 -4.94168 | opp_overlap 3938483 3938482 3938478 3938492 GTAAAATAATTTTTA GAGTATAAAGTT TAA AACTTTATACTC TTTATTTTATTATAT TERM 5657 3939302 - 3939320 + G 73 -3.8 -5.32565 | overlap 3939304 ATGCTGGCAAGCTAA GTTATTCC AAA GGAGTACC TTTTTTAATTAATTC CLI_3811 3938605 - 3939849 + | glycosyl transferase, group 1 family protein TERM 5658 3939968 - 3939938 - T 71 -5.6 -4.6759 | AATAGCTTAATAAAA GAGATAATATTCAA GAA TCCAACATTATCTC TTTTTGTTTGTATTT CLI_3812 3940688 - 3940011 - | phosphotransferase domain-containing protein TERM 5659 3940724 - 3940734 + H 79 -4 -5.67967 | opp_overlap 3940724, overlap 3940717 TTTATCACTATTATA TGAT AAT ATCA TTTTTTTATAATCAT CLI_3813 3940984 - 3941472 + | hypothetical protein TERM 5660 3941483 - 3941514 + F 100 -10.4 -5.74122 | opp_overlap 3941477 3941483 ATTAAAGAATTTAAA TGGATAACAAGT AAAAGGAA ACTTGTTATCCA TTTTTTTATATAATA TERM 5661 3941514 - 3941483 - f 95 -10.4 -3.90038 | opp_overlap 3941483, overlap 3941477 ATTAAAGAATTTAAA TGGATAACAAGT AAAAGGAA ACTTGTTATCCA TTTTTTTATATAATA CLI_3814 3941579 - 3942010 + | hypothetical protein TERM 5662 3942049 - 3942035 - f 90 -4.4 -6.26417 | opp_overlap 3942035 CATTATAAAAAAAAA TTATAA TTG TTATAA CTTATATAAATAACA CLI_3815 3942191 - 3943096 + | LysR family transcriptional regulator CLI_3816 3943184 - 3944380 + | subtilase family protein TERM 5663 3944417 - 3944390 - T 76 -8.6 -3.83378 | opp_overlap 3944390 3944398, overlap 3944398 CCTTAAAATATATAA TAAAAAAAGAGC CTAT GCTCTTTTTTTT ATACATTTTTTAATG TERM 5664 3944409 - 3944398 - T 90 -5.8 -5.9218 | opp_overlap 3944390 3944398, overlap 3944390 TATATAATAAAAAAA GAGC CTAT GCTC TTTTTTTTATACATT TERM 5665 3944398 - 3944409 + T 90 -5.8 -5.97575 | opp_overlap 3944398 3944390, overlap 3944390 TATATAATAAAAAAA GAGC CTAT GCTC TTTTTTTTATACATT CLI_3817 3945297 - 3944416 - | LysR family transcriptional regulator TERM 5666 3944470 - 3944496 + g 71 -2.4 -5.48028 | opp_overlap 3944462, overlap 3944462 3944465 TAATGTAGATAAAAA CTTATCTTTATG ATA TATAAGTATAAG TTTTCTTTTTATTTC CLI_3818 3946273 - 3945326 - | D-isomer specific 2-hydroxyacid dehydrogenase TERM 5667 3946208 - 3946218 + g 88 -4 -5.69023 | AGTTATATCATAACC TAGA TTT TCTA TTTTTTTCATGTTTT TERM 5668 3946489 - 3946460 - R 100 -12.4 -4.69622 | opp_overlap 3946458 ATAGAATTTTAAAAA GAGTATTTAGTG CTTATT CACTAAATACTC CCATGTTTCTAAATT accA 3947312 - 3946473 - | acetyl-CoA carboxylase, carboxyl transferase, alpha subunit accD 3948228 - 3947359 - | acetyl-CoA carboxylase, carboxyl transferase, beta subunit TERM 5669 3947471 - 3947458 - G 76 -5.3 -5.06816 | ATGCTCTAATAAAAA TTCAG ATTT CTGAA AGTCCTCTGGTAACT TERM 5670 3948001 - 3948017 + g 76 -6.7 -4.42062 | opp_overlap 3948004, overlap 3947995 AAAGGTATCTTTATC GAATAAA TAT TTTATTC TTTCTTTAACACCTA accC 3949594 - 3948248 - | biotin carboxylase fabZ 3950060 - 3949626 - | (3R)-hydroxymyristoyl-ACP dehydratase accB 3950556 - 3950080 - | acetyl-CoA carboxylase, biotin carboxyl carrier protein TERM 5671 3950244 - 3950256 + g 86 -6.3 -5.39721 | TAACCTTATCTCCTG CCTTA GCA TAAGG TTTTTTATCTACTCC fabF 3951798 - 3950560 - | 3-oxoacyl-(acyl carrier protein) synthase II fabG-2 3952564 - 3951818 - | 3-ketoacyl-(acyl-carrier-protein) reductase fabD 3953526 - 3952582 - | malonyl CoA-acyl carrier protein transacylase TERM 5672 3953302 - 3953344 + g 70 -4.2 -4.95843 | opp_overlap 3953312 3953316, overlap 3953303 3953309 3953312 GTACTTTTCTAATGC TTTCATAGCAGCAATACTAA GAG TTAGTATTGCTGGTTGGGTA TTTTCTGTTTTATCT TERM 5673 3953303 - 3953342 + g 75 -7.4 -4.07119 | gap 1, opp_overlap 3953312 3953316, overlap 3953302 3953309 3953312 TACTTTTCTAATGCT TTCATAGCAGCAATACTAA GAG TTAGTATTGCTGGT-TGGG TATTTTCTGTTTTAT TERM 5674 3953309 - 3953337 + g 95 -11.9 -3.31575 | opp_overlap 3953312 3953316, overlap 3953303 3953302 3953312 TCTAATGCTTTCATA GCAGCAATACTAA GAG TTAGTATTGCTGG TTGGGTATTTTCTGT TERM 5675 3953334 - 3953312 - G 100 -12.2 -2.62515 | opp_overlap 3953309 3953303 3953302 3953312, overlap 3953316 AATGCTTTCATAGCA GCAATACTAA GAG TTAGTATTGC TGGTTGGGTATTTTC TERM 5676 3953312 - 3953334 + g 100 -12.2 -2.81509 | opp_overlap 3953312 3953316, overlap 3953309 3953303 3953302 AATGCTTTCATAGCA GCAATACTAA GAG TTAGTATTGC TGGTTGGGTATTTTC CLI_3827 3954473 - 3953547 - | 2-nitropropane dioxygenase family oxidoreductase TERM 5677 3954564 - 3954582 + r 88 -5.2 -5.83226 | AAAATTTAATTTTGT GGACCATT TTA GATGGCCC TTTTTTTATTGACTT acpP-2 3954823 - 3954599 - | acyl carrier protein fabH 3955844 - 3954864 - | 3-oxoacyl-(acyl-carrier-protein) synthase III TERM 5678 3955442 - 3955461 + g 70 -3.6 -5.0538 | opp_overlap 3955444, overlap 3955444 CAGCACCTATTATTA AAGCTTTA TTTC TAAAGCTA TTTTTTAACATAGAG TERM 5679 3955444 - 3955459 + g 70 -6.2 -4.15748 | opp_overlap 3955444, overlap 3955442 GCACCTATTATTAAA GCTTTA TTTC TAAAGC TATTTTTTAACATAG CLI_3830 3956313 - 3955837 - | MarR family transcriptional regulator CLI_3831 3957387 - 3956329 - | 2-nitropropane dioxygenase family oxidoreductase TERM 5680 3957438 - 3957485 + r 90 -10.4 -3.33761 | gap 1, opp_overlap 3957438 3957451, overlap 3957451 TTGATAGTCAAAGTA TATAATAAAAAAATATCACTGTC AAT GATAGTGATA-TTTTTTATTATC ATTTTATATAAATTA TERM 5681 3957485 - 3957438 - R 71 -8.2 -2.95942 | gap 1, opp_overlap 3957438 3957451, overlap 3957451 TTGATAGTCAAAGTA TATAATAAAAAAATATCACTGTC AAT GATAGTGATAT-TTTTTATTATC ATTTTATATAAATTA TERM 5682 3957451 - 3957473 + r 100 -10 -5.59534 | opp_overlap 3957438 3957451, overlap 3957438 TATATAATAAAAAAA TATCACTGTC AAT GATAGTGATA TTTTTTATTATCATT TERM 5683 3957473 - 3957451 - R 100 -7.8 -5.9218 | opp_overlap 3957451 3957438, overlap 3957438 TATATAATAAAAAAA TATCACTGTC AAT GATAGTGATA TTTTTTATTATCATT CLI_3832 3958419 - 3957484 - | putative peptidase TERM 5684 3958109 - 3958134 + g 90 -7.1 -5.626 | opp_overlap 3958133, overlap 3958111 3958133 TTGAAAGCTGTTACT TTTATATTAGA ATTT TCTAATATAGA TTTTTTTATAAAATC TERM 5685 3959138 - 3959126 - g 74 -3.3 -5.4492 | opp_overlap 3959126 GATACATAGAAAAAA TAGCC CTA GGCTG GTTTGATGCTAAAAT TERM 5686 3959238 - 3959222 - g 76 -3.7 -5.4593 | overlap 3959223 TTAAAATAAGAAAAA TCCTAAA TTA TTTAGGG GCAAAAGATGGCGAA TERM 5687 3959237 - 3959223 - g 71 -7.2 -3.85118 | overlap 3959222 TAAAATAAGAAAAAT CCTAAA TTA TTTAGG GGCAAAAGATGGCGA CLI_3833 3958600 - 3959586 + | putative DNA replication protein DnaD TERM 5688 3959651 - 3959625 - g 79 -5.2 -5.28683 | AGGAATATGAAAAAA TTAGAGAAAAAG AAT CTTTAGCTCTAA AAAATAGAAGAAAAG CLI_3834 3959579 - 3960556 + | DNA replication protein DnaC TERM 5689 3960594 - 3960541 - T 100 -12.1 -5.57054 | opp_overlap 3960554 3960558, overlap 3960554 AAGAATTCAAAAAAA TATACAAAATAAATAAAGTAGCTAG ATTT CTAGCTACTTTATTCTATATGTATA ATAAATAATAAAAAC TERM 5690 3960554 - 3960581 + T 100 -14.4 -3.67297 | opp_overlap 3960554 3960541, overlap 3960558 AATATACAAAATAAA TAAAGTAGCTAG ATTT CTAGCTACTTTA TTCTATATGTATAAT TERM 5691 3960581 - 3960554 - T 100 -14.4 -4.87008 | opp_overlap 3960554 3960558, overlap 3960541 AATATACAAAATAAA TAAAGTAGCTAG ATTT CTAGCTACTTTA TTCTATATGTATAAT TERM 5692 3960558 - 3960577 + T 100 -10.8 -4.4458 | opp_overlap 3960554 3960541, overlap 3960554 TACAAAATAAATAAA GTAGCTAG ATTT CTAGCTAC TTTATTCTATATGTA CLI_3835 3960824 - 3960609 - | hypothetical protein CLI_3839 3961116 - 3960781 - | hypothetical protein CLI_3856 3962611 - 3961802 - | hypothetical protein TERM 5693 3962290 - 3962310 + g 80 -6.1 -4.97158 | opp_overlap 3962290 CCATATCCCAAACAG CACCAGGCT TAT ATTCTGGTG TTTTATTTAATATAG CLI_3857 3962998 - 3962624 - | CoA-binding protein TERM 5694 3963915 - 3963929 + G 70 -5 -4.58424 | opp_overlap 3963915 TTCTACAATTAAGTA GTTTAG TCT CTAGAC TTTTATATAATAATA CLI_3858 3963179 - 3964408 + | pyridine nucleotide-disulphide oxidoreductase family protein CLI_3859 3965259 - 3964510 - | acyl-ACP thioesterase family protein TERM 5695 3965368 - 3965315 - R 82 -9.3 -3.34517 | opp_overlap 3965320 3965332, overlap 3965319 3965332 ATTTTTGGGCAAATA TAAACTTAATAAAAAAACTCTATGC TAAA ACATAGAGTTTTTTTATTTTACTTA TTTAATGCTTCTAAT TERM 5696 3965364 - 3965319 - R 78 -7.9 -4.32857 | opp_overlap 3965320 3965332, overlap 3965315 3965332 TTGGGCAAATATAAA CTTAATAAAAAAACTCTATGC TAAA ACATAGAGTTTTTTTATTTTA CTTATTTAATGCTTC TERM 5697 3965332 - 3965351 + r 100 -6.5 -6.11229 | opp_overlap 3965319 3965315 3965332, overlap 3965320 AACTTAATAAAAAAA CTCTATG CTAAAA CATAGAG TTTTTTTATTTTACT TERM 5698 3965351 - 3965332 - R 95 -7.2 -5.83226 | opp_overlap 3965332 3965320, overlap 3965319 3965315 AACTTAATAAAAAAA CTCTATGC TAAA ACATAGAG TTTTTTTATTTTACT CLI_3860 3965547 - 3965362 - | hypothetical protein purA 3966959 - 3965673 - | adenylosuccinate synthetase TERM 5699 3967184 - 3967148 - R 89 -9 -4.63527 | opp_overlap 3967139 3967153, overlap 3967153 TTATTATTTTAAAAA TAAAATATTGCAGCTA AATTA TAACTGCAATATTTTT ATTCCTTTATACATT TERM 5700 3967153 - 3967179 + r 83 -6.7 -5.25906 | opp_overlap 3967153 3967148 ATTTTAAAAATAAAA TATTGCAGCTA AATTA TAACTGCAATA TTTTTATTCCTTTAT TERM 5701 3967179 - 3967153 - R 100 -8.9 -5.27023 | opp_overlap 3967153, overlap 3967148 ATTTTAAAAATAAAA TATTGCAGCTA AATTA TAACTGCAATA TTTTTATTCCTTTAT CLI_3862 3968576 - 3967191 - | pyridine nucleotide-disulphide oxidoreductase family protein CLI_3863 3968961 - 3968746 - | hypothetical protein TERM 5702 3969045 - 3969009 - R 95 -10.3 -4.22652 | opp_overlap 3969008 3969009 TTATATTATCTAAAA TAGCCTACCACAGACTT TGA AAACTTGTAGTAGGCTA ATTATTATTTCTATA CLI_3864 3970868 - 3969147 - | phosphoglucomutase/phosphomannomutase family protein TERM 5703 3970142 - 3970156 + g 74 -8.6 -3.28001 | opp_overlap 3970144, overlap 3970137 TTAAAACACGTCTAA CAGGAA TAT TTCCTG TTCCATTTAAAGGTG TERM 5704 3971099 - 3971077 - R 76 -4.2 -5.42198 | opp_overlap 3971077 3971079 TGCGAAAAAATAAAA GCCCTATA AAATAAA TATAGGAC TTTGTATGTTTTATT dnaB 3972447 - 3971110 - | replicative DNA helicase TERM 5705 3972340 - 3972373 + g 100 -14.1 -2.98015 | opp_overlap 3972345, overlap 3972345 AAAATCTTCACTTTT TAAAACTTCCACAGC CTCT GCTATGGAAGTTTTA TCTATAATCATTGCC TERM 5706 3972345 - 3972368 + g 100 -9.6 -4.62984 | opp_overlap 3972345, overlap 3972340 CTTCACTTTTTAAAA CTTCCACAGC CTCT GCTATGGAAG TTTTATCTATAATCA TERM 5707 3972368 - 3972345 - G 100 -11.8 -4.09685 | opp_overlap 3972340 3972345 CTTCACTTTTTAAAA CTTCCACAGC CTCT GCTATGGAAG TTTTATCTATAATCA CLI_3866 3974397 - 3972478 - | ATP-dependent protease TERM 5708 3972572 - 3972583 + g 78 -4.4 -5.35222 | TTCATATTGTCTTTG GGTA TTAT TACC TTTTTTATGCCTTTT rplI 3974851 - 3974408 - | 50S ribosomal protein L9 CLI_3868 3976836 - 3974851 - | DHH family protein TERM 5709 3976200 - 3976212 + g 72 -2.7 -5.4492 | GTCTTTCTATTTCTG CTATT ATT AATGG TTTTTTATCTATATC CLI_3869 3977841 - 3976837 - | hypothetical protein CLI_3870 3978170 - 3977853 - | hypothetical protein TERM 5710 3978298 - 3978277 - R 100 -8.8 -5.76633 | opp_overlap 3978277 TGATATACAAAAAAA CTGACTAC AAATTA GTAGTCAG TTTTATGTAAATTTA TERM 5711 3978277 - 3978298 + r 89 -8.8 -4.59081 | opp_overlap 3978277 TGATATACAAAAAAA CTGACTAC AAATTA GTAGTCAG TTTTATGTAAATTTA rpsR 3978560 - 3978318 - | 30S ribosomal protein S18 TERM 5712 3978410 - 3978424 + g 77 -7.2 -4.33907 | opp_overlap 3978410 CACAGTTTCCTGAAA TTCTTC TTG GAAGAA TTTTGCCTCTTTCTG ssb 3979025 - 3978579 - | single-strand binding protein rpsF 3979325 - 3979041 - | 30S ribosomal protein S6 TERM 5713 3979373 - 3979353 - R 80 -9.7 -3.18264 | opp_overlap 3979350 CTCCCCACGGACTAA CGGCTGTAC TTT GTACAGCAG GGATCTTATCGTACA CLI_3874 3980579 - 3979431 - | putative R-2-hydroxyglutaryl-CoA dehydratase subunit TERM 5714 3979927 - 3979937 + g 75 -4 -5.18297 | opp_overlap 3979927, overlap 3979932 GCATTATCTATCATA TCTT TTA AAGA TTTTATTTCTTCTTC TERM 5715 3980828 - 3980805 - R 93 -6.9 -5.88565 | opp_overlap 3980805 TTTATAACAAAAAAA CTATTGATA TTACTC TATCAATAG TTAATTAAAAAAACT CLI_3875 3981050 - 3980853 - | hypothetical protein CLI_3876 3981935 - 3981066 - | mechanosensitive ion channel family protein CLI_3877 3982187 - 3981942 - | hypothetical protein TERM 5716 3982814 - 3982789 - g 80 -7 -4.79075 | opp_overlap 3982802, overlap 3982793 AAAAATGCAATAAAA GATAGCACAA GACTAG TTGTACTATC TCATGCATCAAACAT CLI_3878 3982378 - 3983532 + | cysteine desulfurase family protein TERM 5717 3984529 - 3984541 + G 86 -2.7 -6.08342 | TTTAAAAGCAAATGG CATAT CTG GTATG TTTTTTTGTTTATTC ytvI 3983546 - 3984601 + | sporulation integral membrane protein YtvI TERM 5718 3984619 - 3984651 + F 86 -5.8 -5.67063 | opp_overlap 3984619 3984614 GCAAAATGTATAAAA CCTCTT-TTAGTGGAT ATA ATCC-CTAACAGGAGG TTTTTTTATGATAAG CLI_3880 3984659 - 3985240 + | hypothetical protein CLI_3881 3985487 - 3985242 - | hypothetical protein TERM 5719 3985491 - 3985537 + r 100 -18.4 -3.72152 | opp_overlap 3985496, overlap 3985496 AAAAATATTCATTAT AAAAACCTCCCTTTATGAAATA TTA TTTTTCATAAAGGGAGGTTTTA TTCTAATTTTCATTA TERM 5720 3985532 - 3985496 - R 100 -18.3 -4.9218 | opp_overlap 3985496 3985491 TATTCATTATAAAAA CCTCCCTTTATGAAATA TTA TTTTTCATAAAGGGAGG TTTTATTCTAATTTT TERM 5721 3985496 - 3985532 + r 100 -18.3 -4.88258 | opp_overlap 3985496, overlap 3985491 TATTCATTATAAAAA CCTCCCTTTATGAAATA TTA TTTTTCATAAAGGGAGG TTTTATTCTAATTTT CLI_3882 3986049 - 3985540 - | hypothetical protein TERM 5722 3986069 - 3986084 + r 74 -6.2 -4.68539 | TATCTCCTCCGTCGA TGTTTC ACGT GAAACA TTTTATAATTTTAGT CLI_3883 3986935 - 3986087 - | stage 0 sporulation protein J soj 3987715 - 3986951 - | sporulation initiation inhibitor protein soj TERM 5723 3987776 - 3987731 - R 90 -11.7 -3.09516 | opp_overlap 3987730 3987729, overlap 3987735 3987758 TTCCTCACCACCTAA TTAATTATTCTACTTTTAATT ATAT AATTTAAAGTAAAATAATTAA AGTCTTTTACATATA TERM 5724 3987772 - 3987735 - R 74 -8.1 -3.38316 | opp_overlap 3987730 3987729, overlap 3987731 3987758 TCACCACCTAATTAA TTATTCTACTTTTAATT ATAT AATTTAAAGTAAAATAA TTAAAGTCTTTTACA TERM 5725 3987812 - 3987841 + r 74 -5.1 -5.17054 | opp_overlap 3987815, overlap 3987814 3987815 TTAAAATTTAATAAA AAATAGATGTTTC ACGT GAAACATCTACTA TTTTTTAGGTATTGT TERM 5726 3987814 - 3987839 + r 78 -7.7 -4.20118 | opp_overlap 3987815, overlap 3987812 3987815 AAAATTTAATAAAAA ATAGATGTTTC ACGT GAAACATCTAC TATTTTTTAGGTATT TERM 5727 3987815 - 3987838 + r 87 -11.2 -3.10444 | opp_overlap 3987815, overlap 3987814 3987812 AAATTTAATAAAAAA TAGATGTTTC ACGT GAAACATCTA CTATTTTTTAGGTAT TERM 5728 3987838 - 3987815 - R 100 -11.2 -5.52096 | opp_overlap 3987815 3987814 3987812 AAATTTAATAAAAAA TAGATGTTTC ACGT GAAACATCTA CTATTTTTTAGGTAT CLI_3885 3988618 - 3987839 - | parB family protein TERM 5729 3988597 - 3988607 + g 72 -2.6 -5.48825 | opp_overlap 3988597 TTTTATCAGTGGAAA TATA ATT TATA TTTTTTTGCATACTA gidB 3989437 - 3988718 - | glucose-inhibited division protein B gidA-2 3991338 - 3989461 - | tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA trmE 3992732 - 3991347 - | tRNA modification GTPase TrmE TERM 5730 3992789 - 3992772 - R 100 -9.9 -5.23765 | opp_overlap 3992771 3992766 CAAATAATATAAAAA GAAAGCC TTTA GGCTTTC CTTAAATTTATTACA jag 3993406 - 3992780 - | jag protein TERM 5731 3992914 - 3992925 + g 70 -5.8 -4.24397 | opp_overlap 3992914 TAGGTTCTAATTTAA CTGG TCTT CCAG TTTCTCTTACCTTAT oxaA 3994077 - 3993424 - | putative inner membrane protein translocase component YidC TERM 5732 3993991 - 3993975 - G 71 -5.9 -4.45664 | TTAATGTAACTAAAA TTATGGC TAT ACCATAA GAAAAGTTAGGATTA CLI_3891 3994312 - 3994103 - | hypothetical protein TERM 5733 3994169 - 3994192 + g 72 -4.6 -5.00642 | gap 1, opp_overlap 3994172, overlap 3994172 TCTCTTTATTGATAT TAAGGTGC-CT TTT AGTGCACCATA TTTTTCTATAGCTTC rnpA 3994644 - 3994309 - | ribonuclease P TERM 5734 3994697 - 3994682 - R 88 -8.2 -4.84359 | opp_overlap 3994682 3994681 GCATCTGCAGAAAAA GGCCAC TAAT GCGGCC CTTATGCTGTCAATC rpmH 3994833 - 3994699 - | 50S ribosomal protein L34 SEQUENCE gi|153941546|ref|NC_009700.1| Clostridium botulinum F str. Langeland plasmid pCLI, complete sequence (length 17531) CLI_A0001 64 - 240 + | hypothetical protein CLI_A0002 268 - 468 + | hypothetical protein CLI_A0003 528 - 896 + | hypothetical protein TERM 1 1000 - 975 - T 74 -9.1 -3.05624 | opp_overlap 973 TAACGAAAAATATGA TGCCATTTACT ATTT AGTAACTGGCA AGTTGACTATGTCAA TERM 2 1002 - 1016 + T 74 -8.6 -3.38294 | overlap 1000 TTTAGTAACTGGCAA GTTGAC TAT GTCAAC TATATTTCTATCGAA CLI_A0004 1348 - 1172 - | hypothetical protein TERM 3 1621 - 1640 + G 74 -8.6 -3.32268 | overlap 1639 TGCGCTAGAGCTTGT GTTACAGC TGGT GCTGTAGC TTATGGAGCTGGTTA CLI_A0005 1537 - 1701 + | hypothetical protein CLI_A0006 1721 - 1897 + | hypothetical protein TERM 4 1960 - 1902 - T 100 -11.6 -4.38927 | opp_overlap 1910 1953 1959, overlap 1904 1905 1910 1953 CTGGCAGATAATAAA CATTAGAATATAATGAGCTTAAAAAA TAATTAT TTTTTTAAGCTCATTATATTTTAGTA AAATCTATATTTTAG TERM 5 1958 - 1904 - T 95 -12 -3.79864 | opp_overlap 1910 1953, overlap 1902 1905 1910 1953 GGCAGATAATAAACA TTAGAATATAATGAGCTTAAAAAA TAATTAT TTTTTTAAGCTCATTATATTTTAG TAAAATCTATATTTT TERM 6 1957 - 1905 - T 100 -15.5 -2.87195 | opp_overlap 1910 1953, overlap 1904 1902 1910 1953 GCAGATAATAAACAT TAGAATATAATGAGCTTAAAAAA TAATTAT TTTTTTAAGCTCATTATATTTTA GTAAAATCTATATTT TERM 7 1910 - 1952 + T 100 -15.4 -4.27617 | opp_overlap 1905 1904 1902 1910 TAATAAACATTAGAA TATAATGAGCTTAAAAAA TAATTAT TTTTTTAAGCTCATTATA TTTTAGTAAAATCTA TERM 8 1952 - 1910 - T 100 -15.4 -3.60631 | opp_overlap 1910, overlap 1905 1904 1902 TAATAAACATTAGAA TATAATGAGCTTAAAAAA TAATTAT TTTTTTAAGCTCATTATA TTTTAGTAAAATCTA CLI_A0007 2381 - 1965 - | hypothetical protein CLI_A0008 2578 - 2384 - | hypothetical protein TERM 9 2648 - 2702 + H 75 -5.5 -4.93898 | gap 1, opp_overlap 2636 2634 2648 2651 2653 2655, overlap 2632 2651 ATATATTACTTATAA TAATATATATTTGTCTTTATGTCAAT TAAA ATTTACATAAAGACAAATA-ACACTA TTTTTATACTGCTCT TERM 10 2702 - 2648 - H 87 -9.9 -3.39036 | gap 1, opp_overlap 2632 2648 2651, overlap 2636 2634 2651 2653 2655 ATATATTACTTATAA TAATATATATTTGTCTTTATGTCAAT TAAA ATTTACATAAAGACAAATA-ACACTA TTTTTATACTGCTCT TERM 11 2699 - 2651 - H 84 -9.4 -3.82824 | gap 1, opp_overlap 2632 2648 2651, overlap 2636 2634 2648 2653 2655 TATTACTTATAATAA TATATATTTGTCTTTATGTCAAT TAAA ATTTACATAAAGACAAATA-ACA CTATTTTTATACTGC TERM 12 2697 - 2653 - H 89 -9.8 -3.49568 | gap 1, opp_overlap 2632 2651 2648, overlap 2634 2651 2648 2655 TTACTTATAATAATA TATATTTGTCTTTATGTCAAT TAAA ATTTACATAAAGACAAATA-A CACTATTTTTATACT TERM 13 2696 - 2655 - H 100 -14.9 -3.3161 | opp_overlap 2632 2651 2648, overlap 2653 2651 2648 ACTTATAATAATATA TATTTGTCTTTATGTCAAT TAAA ATTTACATAAAGACAAATA ACACTATTTTTATAC TERM 14 2820 - 2830 + H 70 -2.6 -5.46698 | TGGAATTATAGTGAG TAAA ATT TTTA TTTTTTCCTTTTCAG CLI_A0009 2904 - 3479 + | phage integrase TERM 15 3520 - 3537 + F 71 -7 -3.92075 | AAATTAATTTATGGG CAAGCC AAGGAA GGCTTG TTTATAAATACAGAT TERM 16 3606 - 3657 + F 87 -11.1 -3.06509 | gap 1, opp_overlap 3601 3606 3605, overlap 3608 3623 TTTTTCTAAACAAAT GATTTGGCG-AAGTCAGACTAGCC TTAAT GGCTTGTTTTACTTACGCTAAATC TCTCCTTGTTTAGAG TERM 17 3759 - 3800 + F 77 -8.9 -3.33696 | gap 1, opp_overlap 3759, overlap 3746 3772 TGTCTTGCTGAGTAA GGTCTATGTACATGCATTCT AAT AGAA-GCTTGTACATGTACC TTAATTCAGGGAGCA CLI_A0010 3911 - 4087 + | hypothetical protein TERM 18 4093 - 4083 - f 73 -3.2 -5.58522 | opp_overlap 4084, overlap 4084 4087 TAGATAAAATAAAAA GGTA GCC CACC GGTCCAATTGGTATG TERM 19 4135 - 4155 + F 75 -9.7 -2.72471 | opp_overlap 4127, overlap 4134 4138 ACAATATTAGCTTTG CCAGTTGCC AGA GGCAACTGA ATTGTATACTACAGG TERM 20 4138 - 4152 + F 79 -10 -2.64051 | overlap 4135 4134 ATATTAGCTTTGCCA GTTGCC AGA GGCAAC TGAATTGTATACTAC TERM 21 4187 - 4167 - f 86 -11.9 -2.64794 | opp_overlap 4167, overlap 4169 CTGAATTGTATACTA CAGGGTGCT GGC AACACCCTG TTTTTATTATACGCA TERM 22 4167 - 4187 + F 100 -9.7 -5.18726 | opp_overlap 4167 4169 CTGAATTGTATACTA CAGGGTGCT GGC AACACCCTG TTTTTATTATACGCA TERM 23 4185 - 4169 - f 73 -8.7 -2.86475 | opp_overlap 4167, overlap 4167 GAATTGTATACTACA GGGTGCT GGC AACACCC TGTTTTTATTATACG CLI_A0011 4527 - 5339 + | caax amino protease family protein TERM 24 5405 - 5361 - T 100 -16.8 -5.40004 | gap 1, opp_overlap 5361 TATTAAATCAAAAAA GTCACCAGATACCACA-AC TTAAATTT GTCTGTGGTATCTGGTGAC TTCATGTATAAATAA TERM 25 5361 - 5405 + T 100 -16.8 -3.32993 | gap 1, opp_overlap 5361 TATTAAATCAAAAAA GTCACCAGATACCACA-AC TTAAATTT GTCTGTGGTATCTGGTGAC TTCATGTATAAATAA TERM 26 5563 - 5600 + T 79 -3.7 -5.72207 | gap 1, opp_overlap 5568 5570, overlap 5566 AAATTTTAAAATTTA TACTATAGTTACAAAAGT GTT ACTTTAGCAACTATA-TA TTTTTTTACTTTCCC TERM 27 5566 - 5598 + T 81 -7.9 -4.49088 | opp_overlap 5568 5570, overlap 5563 TTTTAAAATTTATAC TATAGTTACAAAAGT GTT ACTTTAGCAACTATA TATTTTTTTACTTTC CLI_A0012 6619 - 5606 - | RepB family protein TERM 28 6695 - 6683 - R 77 -4.9 -5.3236 | opp_overlap 6672 6669 6687, overlap 6642 6638 6686 6687 ATAACTTATAAAAAA TAAGT TAT ACTTA GTATAATTGTTGATA CLI_A0013 6936 - 6817 - | hypothetical protein TERM 29 6966 - 6944 - H 78 -6.4 -4.88288 | opp_overlap 6944, overlap 6939 TAAAACAATATAAAA CTACTACT GTGTTTT AGTAGTAG TTTTTTTACTATAAA TERM 30 6944 - 6966 + H 91 -7.1 -5.58454 | opp_overlap 6944 6939 TAAAACAATATAAAA CTACTACTG TGTTT TAGTAGTAG TTTTTTTACTATAAA CLI_A0014 7202 - 7732 + | sigma-70 family RNA polymerase sigma factor TERM 31 8003 - 8021 + T 73 -9 -2.84812 | opp_overlap 7994 8007 AAAATATCTCCTTAA TGTAGATA TTA TATCTACA TCTAATGATATCCAT CLI_A0015 9109 - 8465 - | putative phosphoglycerate mutase family protein TERM 32 9361 - 9386 + H 77 -3.3 -5.76949 | opp_overlap 9359 9362 9364, overlap 9362 9364 TTAAACTAATAAATA ACACTAGATAC AAGA GTATCTAGTAC TTTTTTTTACAAATA TERM 33 9385 - 9362 - H 84 -9 -4.30104 | opp_overlap 9361 9362 9364, overlap 9359 9364 TAAACTAATAAATAA CACTAGATAC AAGA GTATCTAGTA CTTTTTTTTACAAAT TERM 34 9362 - 9385 + H 71 -6.8 -4.05085 | opp_overlap 9362 9359 9364, overlap 9361 9364 TAAACTAATAAATAA CACTAGATAC AAGA GTATCTAGTA CTTTTTTTTACAAAT TERM 35 9364 - 9383 + H 83 -9.4 -3.60685 | opp_overlap 9362 9359 9364, overlap 9362 9361 AACTAATAAATAACA CTAGATAC AAGA GTATCTAG TACTTTTTTTTACAA TERM 36 9383 - 9364 - H 84 -9.4 -3.72352 | opp_overlap 9364 9362 9361, overlap 9362 9359 AACTAATAAATAACA CTAGATAC AAGA GTATCTAG TACTTTTTTTTACAA TERM 37 9498 - 9487 - g 78 -3 -5.626 | TATGTTAGAAAAAAA TCTA GTTC TAGA ATACCAAGATGGCTT CLI_A0016 9455 - 9676 + | hypothetical protein CLI_A0017 9696 - 9923 + | hypothetical protein TERM 38 9954 - 9931 - T 88 -6.7 -5.63012 | opp_overlap 9931 AAAAATAAATAAAAA GCTCTCACA TTATAT TGTGGGAGC TTTTTAAAGTATTTC TERM 39 9931 - 9954 + T 89 -8.9 -4.6856 | opp_overlap 9931 AAAAATAAATAAAAA GCTCTCACA TTATAT TGTGGGAGC TTTTTAAAGTATTTC CLI_A0018 10222 - 9995 - | hypothetical protein CLI_A0019 10709 - 10224 - | hypothetical protein CLI_A0020 10930 - 10706 - | hypothetical protein CLI_A0021 12549 - 11158 - | replication protein TERM 40 11501 - 11511 + g 71 -6.8 -3.88137 | opp_overlap 11501 CTATCTTTAAACCAA GCCT CAT AGGC TTTCTCAGCACTTCT TERM 41 12769 - 12749 - R 83 -6.1 -5.38326 | opp_overlap 12749 12748 TTAACTAAACAAAAA GGGAGTATA TTA TGTACCCCC ATTTTTTAAATTTAT CLI_A0022 13545 - 12781 - | hypothetical protein TERM 42 13624 - 13673 + r 100 -9.9 -4.38114 | gap 1, opp_overlap 13632, overlap 13632 TGCTTTTTCCTCTAA TATA-AAAAGTAAGATTAAAAATA GTT TATTTTTAATCTTACTTTAATGTA TTTCTTATGAATTTT TERM 43 13632 - 13664 + r 100 -15.3 -3.99819 | opp_overlap 13632, overlap 13624 CCTCTAATATAAAAA GTAAGATTAAAAATA GTT TATTTTTAATCTTAC TTTAATGTATTTCTT TERM 44 13664 - 13632 - R 100 -15.3 -5.0916 | opp_overlap 13632 13624 CCTCTAATATAAAAA GTAAGATTAAAAATA GTT TATTTTTAATCTTAC TTTAATGTATTTCTT CLI_A0023 15148 - 13718 - | putative bacteriocin ABC transporter, bacteriocin-binding protein CLI_A0024 17370 - 15148 - | ABC transporter CbaT TERM 45 16004 - 16042 + g 85 -8.2 -4.58419 | ATTTCTCCAAGTCTT TCTCCGGCTACAACTGCA GTT TGAAGTTGTGGTTGAAGA TTTATTATATTTTCT TERM 46 16286 - 16296 + g 70 -5.4 -4.64846 | TTAACTTCACCTTCA GCAT TAA ATGC TTTTATAGTTTCTAC