TransTermHP v2.07 (built on Jan 21 2009) 25 bins; sample size is 20000000 --pval-conf=/fs/szasmg2/carlk/TTupdate2/expterm.dat --gc=-2.3 --au=-0.9 --gu=1.3 --mm=3.5 --gap=6 --max-len=59 --min-stem=4 --max-loop=13 --min-loop=3 --uwin-length=6 --uwin-require=3 --max-hp-score=-2 --max-tail-score=-2.5 --loop-penalty=1,2,3,4,5,6,7,8,9,10,11 --start-cut=0 --end-cut=25 Genes: 0.635846 %AT, 3870178 nt, 21892 terms. Intergenic: 0.688719 %AT, H2T: 724239 nt, 5678 terms; T2T: 118324 nt, 2543 terms; H2H: 181699 nt, 2887 terms. Each terminator entry starts in column 3 and is of the form: term # start - end +/- regionconf hp tail | notes Followed by the sequence of the 5' tail, 5' stem, loop, 3' stem, and 3' tail. Genes are interspersed, and start the first column. SEQUENCE gi|160878162|ref|NC_010001.1| Clostridium phytofermentans ISDg, complete genome (length 4847594) TERM 1 297 - 286 - g 76 -5.8 -4.62471 | GTCAATTTTTAAAAA CTGC TATT GCAG AAGTGATTAATCAAG Cphy_0001 75 - 1436 + | chromosomal replication initiator protein DnaA TERM 2 1449 - 1482 + F 86 -9.7 -3.98282 | opp_overlap 1455, overlap 1451 1455 TAATATCTTTCTTGA TATAAAGTGAGGCGG TTTT CTGACTCACTTTATG TTTCATTGATATCAA TERM 3 1451 - 1480 + F 86 -10.1 -3.57915 | opp_overlap 1455, overlap 1449 1455 ATATCTTTCTTGATA TAAAGTGAGGCGG TTTT CTGACTCACTTTA TGTTTCATTGATATC TERM 4 1455 - 1476 + F 74 -6.5 -4.40184 | opp_overlap 1455, overlap 1451 1449 CTTTCTTGATATAAA GTGAGGCGG TTTT CTGACTCAC TTTATGTTTCATTGA TERM 5 2703 - 2688 - g 76 -4.7 -4.95896 | AGAAACCGAGAAAAA GCCAA TTATTG TTGGC ATTGAAGATAAAAAA TERM 6 2758 - 2738 - g 72 -8.3 -3.51015 | opp_overlap 2735, overlap 2736 2732 AATTAAAAATCAATA CCTCCATTG GAA CAATGGATG AAGATATTGATATTG Cphy_0002 1849 - 2961 + | DNA polymerase III, beta subunit Cphy_0003 3099 - 3314 + | RNA-binding S4 domain-containing protein TERM 7 3358 - 3404 + F 77 -9.1 -3.29211 | gap 1, opp_overlap 3360, overlap 3353 3359 3360 TTGTGAAGTCTCTAA TAT-CACCTCTATGTATGAATA TGTA TTTTTATGCATAGAGGTGAATA TTGAATTTCCAATTA TERM 8 3359 - 3402 + F 78 -9.8 -3.20617 | opp_overlap 3360, overlap 3358 3353 3360 TGTGAAGTCTCTAAT ATCACCTCTATGTATGAATA TGTA TTTTTATGCATAGAGGTGAA TATTGAATTTCCAAT TERM 9 3401 - 3360 - f 74 -8.9 -3.04322 | opp_overlap 3359 3358 3353 3360 GTGAAGTCTCTAATA TCACCTCTATGTATGAATA TGTA TTTTTATGCATAGAGGTGA ATATTGAATTTCCAA TERM 10 3360 - 3401 + F 100 -13.3 -2.51888 | opp_overlap 3360, overlap 3359 3358 3353 GTGAAGTCTCTAATA TCACCTCTATGTATGAATA TGTA TTTTTATGCATAGAGGTGA ATATTGAATTTCCAA TERM 11 3792 - 3779 - f 90 -8.1 -4.89339 | opp_overlap 3779 AACCATGTACAAAAA GCGTG TAAA CACGC TTGGGTTTTCTTGCT TERM 12 3779 - 3792 + F 73 -8.1 -3.46236 | opp_overlap 3779 AACCATGTACAAAAA GCGTG TAAA CACGC TTGGGTTTTCTTGCT Cphy_0004 3870 - 4952 + | DNA replication and repair protein RecF Cphy_0005 4986 - 6914 + | DNA gyrase, B subunit TERM 13 7409 - 7397 - g 93 -7.7 -5.22289 | GATGAAACAGAAAAA GAACC ATT GGTTC TTCCAGCAAGATATC Cphy_0006 6932 - 9631 + | DNA gyrase, A subunit TERM 14 9689 - 9742 + F 100 -15 -3.92542 | gap 1, opp_overlap 9698 9734, overlap 9698 TATGATTTTCCGATA TTTTAGAAA-TTCGTAGTCCTTTGG TAATC CCTATGGACTACGAATTTTCTAAAA TTATTTAGAGATAAA TERM 15 9698 - 9732 + F 100 -11.5 -4.44461 | opp_overlap 9698, overlap 9689 CCGATATTTTAGAAA TTCGTAGTCCTTTGG TAATC CCTATGGACTACGAA TTTTCTAAAATTATT TERM 16 9732 - 9698 - f 95 -11.5 -3.91144 | opp_overlap 9698 9689 CCGATATTTTAGAAA TTCGTAGTCCTTTGG TAATC CCTATGGACTACGAA TTTTCTAAAATTATT Cphy_0007 9911 - 10753 + | tartrate/fumarate subfamily Fe-S type hydro-lyase alpha subunit Cphy_0008 10807 - 11355 + | tartrate/fumarate subfamily Fe-S type hydro-lyase beta subunit Cphy_0009 11434 - 11871 + | BadM/Rrf2 family transcriptional regulator TERM 17 11895 - 11928 + F 100 -14.1 -4.39287 | opp_overlap 11898 11914 AGAATAGCCTTCAAG GGAGTATGCCTTATT GAAA GATAAGGTATACTCC TTTTCATATAATTCA Cphy_0010 12344 - 13630 + | O-acetylhomoserine/O-acetylserine sulfhydrylase Cphy_0011 13672 - 14604 + | cysteine synthase A TERM 18 14764 - 14804 + F 100 -14.3 -3.63569 | opp_overlap 14764 TTATAGGTTTCAAAA CTAACTCTGTGATAGATGT GTT GCATTTGTTACAGAGTTAG TTATTACAGAGTTAG TERM 19 14804 - 14764 - f 71 -7 -4.10657 | opp_overlap 14764 TTATAGGTTTCAAAA CTAACTCTGTGATAGATG TGTTG CATTTGTTACAGAGTTAG TTATTACAGAGTTAG TERM 20 15337 - 15323 - f 87 -4.4 -5.74086 | overlap 15316 AAATTAAATAAAAAA TTTAAA TAA TTTAAA AAATATACTTGACAC TERM 21 15724 - 15744 + F 90 -9.9 -4.06903 | overlap 15737 CGTCGATTAGTATCA GTTTTTAAC TTC GTTAAAAAC TTTAATTTGAGAGTT TERM 22 16364 - 16344 - f 80 -8.9 -3.64371 | opp_overlap 16339 16344, overlap 16345 AAGTCAGATGTGAAA GCCCAGGGC TCA ACCCTGGGA CTGCATTTGAAACTG TERM 23 16363 - 16345 - f 89 -12.4 -2.7814 | opp_overlap 16344 16339, overlap 16344 AGTCAGATGTGAAAG CCCAGGGC TCA ACCCTGGG ACTGCATTTGAAACT TERM 24 17625 - 17604 - f 74 -2.3 -5.53436 | opp_overlap 17624, overlap 17607 17613 ACATAATATAAAAAA GGATAATAA CTGA TCATTAACC AGTGATTAGATAAAT TERM 25 18199 - 18182 - f 93 -11.3 -3.63895 | opp_overlap 18181 18180 GGGAAGGAGCCTAAA CCGTGGA TTTA TCCACGG GGTTATGGACCGCAA TERM 26 18435 - 18424 - f 76 -7.2 -4.2354 | GAAAGGTGAAAAGAA CCCC GGGA GGGG AGTGAAAGAGAACCT TERM 27 18612 - 18598 - f 77 -8.6 -3.57615 | TGAATAGGGCGTAAA TCCATC TTT GATGGA TCAGTCAGTACGTGT TERM 28 20870 - 20846 - f 70 -4.4 -4.86731 | opp_overlap 20845 20867 TTTGTTTAAAGAAAA GTTGATCAAT GTTTA ATTGATTAAC AATTTGGTTGAAAAA TERM 29 20867 - 20907 + F 100 -15.2 -2.87468 | opp_overlap 20846 20870 20873, overlap 20845 20870 20873 CAATGTTTAATTGAT TAACAATTTGGTTGAAAA AAAGC TTTTCAATCAAATTGTTA TATGGTATAATAGAA TERM 30 20904 - 20870 - f 85 -11 -3.21912 | opp_overlap 20845 20867 20870 20873, overlap 20873 TGTTTAATTGATTAA CAATTTGGTTGAAAAA AAG CTTTTCAATCAAATTG TTATATGGTATAATA TERM 31 20870 - 20904 + F 95 -12.5 -3.58365 | opp_overlap 20870 20873, overlap 20845 20867 20873 TGTTTAATTGATTAA CAATTTGGTTGAAAA AAAGC TTTTCAATCAAATTG TTATATGGTATAATA TERM 32 20873 - 20901 + F 77 -8.4 -3.92001 | opp_overlap 20873 20870, overlap 20870 20867 TTAATTGATTAACAA TTTGGTTGAAAA AAAGC TTTTCAATCAAA TTGTTATATGGTATA TERM 33 21739 - 21774 + F 100 -14.4 -5.72207 | gap 1, opp_overlap 21733 21739 21748 CACTAATAAGATGAA GCTGTAAAATAATTGGA CAA TCCA-TTATTTTACAGC TTTTTTTGATTTCAA TERM 34 21774 - 21739 - f 100 -14.4 -3.4758 | gap 1, opp_overlap 21739, overlap 21733 21748 CACTAATAAGATGAA GCTGTAAAATAATTGGA CAA TCCA-TTATTTTACAGC TTTTTTTGATTTCAA TERM 35 22424 - 22437 + G 76 -6.7 -4.4078 | opp_overlap 22424 GGTGTATCAACAGAA TCTGG AATA CCAGA TTTTCGTTCAGAAAA Cphy_0012 22337 - 23074 + | NAD-dependent deacetylase TERM 36 23698 - 23717 + G 73 -6.4 -4.20783 | opp_overlap 23698 TTAGCTGCTAGAGCA GGAGCAAC TTAT GTTTCTCC TTTCTTAGGTAGACT Cphy_0013 23329 - 23982 + | transaldolase TERM 37 24116 - 24151 + F 79 -10 -2.96873 | GTGCAAAAGGACACC TTTTATTGGAAGTTTA AAAT TGAACTTCCGATAAGA TAATTTAATAGAAAT TERM 38 25824 - 25849 + G 80 -10.5 -3.36671 | opp_overlap 25822 25820 TCTAATAAGGAGACT CCAGATGCAAT TATT ATTGCAACTGG TTCTGAAGTTGAACT Cphy_0014 24186 - 26168 + | transketolase TERM 39 26278 - 26304 + F 93 -6.7 -5.40474 | opp_overlap 26278 26273 TAATTAAGGAGAAAA GAACTTGCA GTTGTGATA TGCAAGTTC TTTTTTTGGGCAAAT TERM 40 26304 - 26278 - f 79 -6.7 -4.58213 | opp_overlap 26278, overlap 26273 TAATTAAGGAGAAAA GAACTTGCA GTTGTGATA TGCAAGTTC TTTTTTTGGGCAAAT Cphy_0015 26532 - 27218 + | two component transcriptional regulator Cphy_0016 27208 - 28647 + | integral membrane sensor signal transduction histidine kinase TERM 41 28654 - 28688 + T 90 -5.8 -5.64274 | opp_overlap 28654 GATAGTTAATAAGAA GGACAGTAAAGGAA CTAGATA TTCACTTACTGTCC TTTTTTTGTGAATAA TERM 42 28688 - 28654 - T 82 -8.7 -3.98378 | opp_overlap 28654 GATAGTTAATAAGAA GGACAGTAAAGGAAC TAGAT ATTCACTTACTGTCC TTTTTTTGTGAATAA TERM 43 28828 - 28776 - T 79 -3.7 -5.66229 | gap 1, opp_overlap 28793 ATGAATAATAAAAAA GGTACGAATACAAACAC-TAACTT AAATAA AAGTTATAAGTTTGTATCAGCACC TTTTATGACGATAAA Cphy_0017 30842 - 29061 - | ABC transporter related TERM 44 30714 - 30701 - G 73 -5.3 -4.58308 | opp_overlap 30665 GATTAATCAAAGAAA TGGTA ATTG TACCA CACATAATAAGTAAT TERM 45 30903 - 30935 + r 100 -14.3 -3.56643 | opp_overlap 30906 30912, overlap 30906 30912 TCTTTCTATTCATGA CAAGGAAAAGTTCGC GAA GCGTACTTTTTCTTG TTTAAGCAGTATCAC TERM 46 30906 - 30932 + r 87 -10.2 -3.91984 | opp_overlap 30906 30912, overlap 30903 30912 TTCTATTCATGACAA GGAAAAGTTCGC GAA GCGTACTTTTTC TTGTTTAAGCAGTAT TERM 47 30932 - 30906 - R 73 -8 -3.4252 | opp_overlap 30906 30903 30912, overlap 30912 TTCTATTCATGACAA GGAAAAGTTCGC GAA GCGTACTTTTTC TTGTTTAAGCAGTAT TERM 48 30912 - 30926 + r 84 -5.6 -5.38549 | opp_overlap 30912 30906, overlap 30906 30903 TCATGACAAGGAAAA GTTCGC GAA GCGTAC TTTTTCTTGTTTAAG Cphy_0018 32732 - 30987 - | ABC transporter related TERM 49 32087 - 32099 + g 71 -4.9 -4.56597 | TATGTGATAAGAACT TTTGA ATT TCAAA TTTTTCACGAGCAAA TERM 50 32756 - 32766 + H 74 -5.4 -4.86621 | TCTCCTCCTTGCACA CCTA TAA TAGG TTTTTAATTACAAAT TERM 51 32901 - 32923 + H 71 -7.6 -3.45386 | opp_overlap 32902, overlap 32902 TTTTAGACAAAAAAA AGCCGTGGCA AGA TACCACGGCA TTCATTCTAAGATAT TERM 52 32902 - 32922 + H 82 -11.1 -2.6675 | opp_overlap 32902, overlap 32901 TTTAGACAAAAAAAA GCCGTGGCA AGA TACCACGGC ATTCATTCTAAGATA TERM 53 32922 - 32902 - H 100 -13.3 -6.02914 | opp_overlap 32902 32901 TTTAGACAAAAAAAA GCCGTGGCA AGA TACCACGGC ATTCATTCTAAGATA TERM 54 33596 - 33564 - g 74 -2.9 -5.30616 | overlap 33552 33547 33565 33566 TTATTGAAACAAAAA GCGTTTCAATAAT CGAAGGT ATTATTGAAACAA AAAGCAGAAAGCATG Cphy_0019 33488 - 33748 + | hypothetical protein TERM 55 34403 - 34417 + G 73 -8.6 -3.42841 | opp_overlap 34400 34399 AAGAACATATAGTGA TGATCC GAT GGATCA TTATCGTGAGATTGT Cphy_0020 33777 - 34718 + | RelA/SpoT domain-containing protein Cphy_0021 35857 - 34946 - | RNA-binding S1 domain-containing protein TERM 56 35571 - 35597 + g 75 -9.6 -3.25356 | opp_overlap 35571 35568 CAAGATAATATATCA TCTGCTTTTTTC TTT GAAAGAAGTAGA TTACCTTCCTTATCC TERM 57 36311 - 36293 - g 86 -4.5 -5.65927 | GATTCAAAGAAAAAA CCATCCT TGCAT AGGGTGG TGGGCCCTACCAGGA Cphy_0022 36006 - 36809 + | NUDIX hydrolase Cphy_0023 37717 - 36983 - | hypothetical protein Cphy_0024 38095 - 39390 + | putative aminopeptidase 2 TERM 58 40359 - 40373 + F 71 -7.8 -3.40597 | opp_overlap 40368, overlap 40357 40367 40368 ATTAAAGTGGCACCA CGGGAG ATA CTCTCG TCTTTAAATAGACGG TERM 59 40367 - 40392 + F 86 -3.2 -6.20267 | opp_overlap 40368, overlap 40359 40357 40368 GGCACCACGGGAGAT ACTCTCGTCT TTAAAT AGACGGGGGC TTTTTTTATTTTTAG TERM 60 40368 - 40391 + F 74 -6.7 -4.285 | opp_overlap 40368, overlap 40359 40357 40367 GCACCACGGGAGATA CTCTCGTCT TTAAAT AGACGGGGG CTTTTTTTATTTTTA TERM 61 42349 - 42337 - g 73 -6.3 -4.5287 | GGAAATCAAGTAAAA CAGAT TGT ATCTG GAATCAAGGCTCATT Cphy_0025 40543 - 42537 + | methionyl-tRNA synthetase TERM 62 42606 - 42663 + T 86 -11.5 -2.87798 | opp_overlap 42606, overlap 42606 AAAGTAGATAAAAAG GGAACAAGGGAGTCTTTGTGTGGTGTT TCTT AACACTGTAGAAAGACAATCTTGTTCC CTCTTTATTCTGTGT Cphy_0026 42926 - 42711 - | hypothetical protein Cphy_0027 43272 - 43535 + | hypothetical protein TERM 63 43676 - 43706 + F 100 -7.1 -5.87688 | opp_overlap 43675 43673 ATAAGATAGATATAT TCATTGCATTA AAATACACC TAATGCAATGA TTTTTTTTGGATTCT Cphy_0029 44224 - 44937 + | methyltransferase type 11 Cphy_0030 44956 - 45768 + | hypothetical protein TERM 64 45788 - 45822 + F 71 -3.1 -5.20333 | gap 2, overlap 45782 TTCGTAAAATAAAAT GCTGCTCTTATATATCT AAA AG-TA-ATAGGAGTAGC TTTTTATTGTCAATC Cphy_0031 46157 - 47131 + | hypothetical protein Cphy_0032 47419 - 48633 + | type II secretion system protein E TERM 65 48668 - 48647 - f 74 -7.5 -3.78312 | opp_overlap 48647 AAAGGAGGTAGTAAA TTGAAAAAT CAAG ATTTTTCAA ACACGAATTTGTACT TERM 66 48937 - 48919 - g 71 -4.6 -4.87389 | GATCGCAAAAAGAAA CTAAATAC TGA GTTTTTAG ATGGGATTCATAGTT Cphy_0033 48724 - 49467 + | Flp pilus assembly protein TadB-like protein Cphy_0034 49484 - 50941 + | hypothetical protein Cphy_0035 51057 - 51260 + | hypothetical protein Cphy_0036 51273 - 53756 + | hypothetical protein Cphy_0037 53921 - 54835 + | hypothetical protein Cphy_0038 54915 - 55349 + | peptidase A24A prepilin type IV TERM 67 55545 - 55559 + G 78 -3.6 -5.26247 | overlap 55547 CTTTTGTTTTACCAC TTGTAT TTT ATACGA TTTTATTTCTTTTAA TERM 68 55624 - 55648 + G 100 -13.7 -3.10493 | opp_overlap 55628 55631, overlap 55628 ACAAGCATTAGGGGA GGAAGTAGCTT TAA AAGCTGCTTCC TATATCTCTTACCAA Cphy_0039 55496 - 56068 + | hypothetical protein Cphy_0040 56324 - 58066 + | FHA domain-containing protein TERM 69 58177 - 58228 + F 82 -7.5 -4.4874 | gap 1, opp_overlap 58175 58178 58208, overlap 58178 58208 58209 CTTATAGAGACAAGG AGGTGTTGTAGCGGTCCTTTGA AAAAGGGAA TCAAAAGGCCG-TACAACACCC TTTTGGATTTTTGAG TERM 70 58178 - 58227 + F 85 -11 -3.28159 | gap 1, opp_overlap 58178 58175 58208, overlap 58177 58208 58209 TTATAGAGACAAGGA GGTGTTGTAGCGGTCCTTTGA AAAAGGGAA TCAAAAGGCCG-TACAACACC CTTTTGGATTTTTGA TERM 71 58227 - 58178 - f 83 -11 -2.93455 | gap 1, opp_overlap 58177 58178 58208 58209, overlap 58175 58208 TTATAGAGACAAGGA GGTGTTGTAGCGGTCCTTTGA AAAAGGGAA TCAAAAGGCCG-TACAACACC CTTTTGGATTTTTGA TERM 72 58648 - 58633 - g 72 -7.6 -3.78934 | opp_overlap 58633 58635 TGTTTGGGATAAGAA TACAGG AGAA CCTGTA TATAATGCTATTGTG Cphy_0041 58361 - 59860 + | glycerol kinase Cphy_0042 59873 - 61063 + | rhomboid family protein Cphy_0043 61053 - 62057 + | hypothetical protein TERM 73 62403 - 62379 - g 76 -4.3 -5.10077 | overlap 62381 AAAGATTTTAAAAAA CATGATAAAAC TAG GTTTTTTCAAG ATAATTTCATTGAAC Cphy_0044 62196 - 62465 + | hypothetical protein Cphy_0045 62635 - 63609 + | hypothetical protein TERM 74 63609 - 63645 + F 74 -9.5 -2.52676 | opp_overlap 63609 63612, overlap 63609 GAAGGTATTTCAATA GCATTGCGTAAGCAATG ATA CATTGCGTAAGCAATGA TACATTGCGAAGATA TERM 75 63645 - 63609 - f 76 -9.5 -3.06969 | opp_overlap 63609 63609, overlap 63612 GAAGGTATTTCAATA GCATTGCGTAAGCAATG ATA CATTGCGTAAGCAATGA TACATTGCGAAGATA TERM 76 63642 - 63612 - f 74 -9.8 -2.75074 | opp_overlap 63609 63609, overlap 63609 GGTATTTCAATAGCA TTGCGTAAGCAATG ATA CATTGCGTAAGCAA TGATACATTGCGAAG TERM 77 65293 - 65315 + G 73 -9.2 -2.90615 | opp_overlap 65292 65299, overlap 65299 AAGGTGATAAAGGAT GGAGAAGCTT TAG AAGCTTATCC TGATTTAACAAAAAT Cphy_0046 63796 - 65364 + | DNA polymerase III, subunits gamma and tau TERM 78 65526 - 65511 - g 73 -3.2 -5.12068 | opp_overlap 65520 65524 GAGATGGAAGAAAAA CAGTGG GAGG CTACTG CTGGTGGCGGTGCTG Cphy_0047 65391 - 65750 + | hypothetical protein Cphy_0048 66208 - 66804 + | recombination protein RecR TERM 79 66886 - 66875 - f 74 -7.2 -4.14725 | TACTGAAAGGATAAA GGGG TGTG CCCC TTGAAACAAAAAGAA TERM 80 66925 - 66906 - f 72 -5 -4.8245 | opp_overlap 66918, overlap 66909 AACAAAAAGAATAAA CAATAGGA GGTT TCCTATGG AACATGAAAATGTAC Cphy_0049 66922 - 68031 + | hypothetical protein TERM 81 68040 - 68091 + T 100 -17.6 -5.31456 | opp_overlap 68040 GGAATAGCGATAAAA TAGCTCCCTCTCAGTAAATCGTTT ACGT AAGCGATTTGCTAAAAGGGAGCTA TTTTTTATGGATTAG TERM 82 68091 - 68040 - T 100 -17.6 -4.4727 | opp_overlap 68040 GGAATAGCGATAAAA TAGCTCCCTCTCAGTAAATCGTTT ACGT AAGCGATTTGCTAAAAGGGAGCTA TTTTTTATGGATTAG Cphy_0050 68689 - 68096 - | sporulation protein YyaC Cphy_0051 69062 - 70372 + | peptidoglycan-binding LysM TERM 83 70383 - 70421 + F 88 -6.1 -5.41746 | gap 1 CATAACTAAAAATTG GCTTGGCTTAGAGTGTGC TTCA GT-TACTCTGGGTCAAGC TTTTTTTAAAAAATT Cphy_0052 70537 - 71733 + | hypothetical protein Cphy_0053 71737 - 72438 + | hypothetical protein Cphy_0054 72635 - 73597 + | 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase Cphy_0055 73980 - 75317 + | hypothetical protein TERM 84 75468 - 75503 + F 100 -8.4 -5.75478 | opp_overlap 75468 75473 TATTCTATATTTAAA TAAAAGGGGTACCAAA CATA TGTGGTATCCCCTTTA TTTTTTTATATGCTT TERM 85 75503 - 75468 - f 75 -8.4 -3.71378 | opp_overlap 75468, overlap 75473 TATTCTATATTTAAA TAAAAGGGGTACCAAA CATA TGTGGTATCCCCTTTA TTTTTTTATATGCTT TERM 86 75498 - 75473 - f 80 -6.1 -4.92385 | opp_overlap 75468, overlap 75468 TATATTTAAATAAAA GGGGTACCAAA CATA TGTGGTATCCC CTTTATTTTTTTATA TERM 87 75762 - 75736 - f 72 -3.7 -5.16237 | AAGCGGAGCAAAAAA GTGCAAAAAAC ATATG GGTTTTAGCAC AATAGAACATTGATA TERM 88 75988 - 76010 + F 87 -10.8 -3.5332 | overlap 76009 ACGTCAATTAGTATC GATTTTTAAC TTT GTTAAAAATC TTAATTTGAGAGTTT TERM 89 76629 - 76609 - f 80 -8.9 -3.64371 | opp_overlap 76604 76609, overlap 76610 AAGTCAGATGTGAAA GCCCAGGGC TCA ACCCTGGGA CTGCATTTGAAACTG TERM 90 76628 - 76610 - f 89 -12.4 -2.7814 | opp_overlap 76609 76604, overlap 76609 AGTCAGATGTGAAAG CCCAGGGC TCA ACCCTGGG ACTGCATTTGAAACT TERM 91 77967 - 77947 - f 77 -9.1 -3.24245 | overlap 77950 77960 TTATTGACAATTTAA CAAGTGAAT TTA ATTCACCTG GGGGTGTAGCTCAGT TERM 92 77964 - 77950 - f 70 -7.2 -3.75766 | overlap 77947 77960 TTGACAATTTAACAA GTGAAT TTA ATTCAC CTGGGGGTGTAGCTC TERM 93 78602 - 78585 - f 93 -11.3 -3.63895 | opp_overlap 78584 78583 GGGAAGGAGCCTAAA CCGTGGA TTTA TCCACGG GGTTATGGACCGCAA TERM 94 78838 - 78827 - f 76 -7.2 -4.2354 | GAAAGGTGAAAAGAA CCCC GGGA GGGG AGTGAAAGAGAACCT TERM 95 79015 - 79001 - f 77 -8.6 -3.57615 | TGAATAGGGCGTAAA TCCATC TTT GATGGA TCAGTCAGTACGTGT TERM 96 81233 - 81244 + F 71 -3 -5.26875 | opp_overlap 81233 GGCTTAACCTAAAAG GTTT GTTT AAAC TTTTTTAATTGACAA TERM 97 81493 - 81525 + F 100 -10.8 -5.75822 | gap 1, opp_overlap 81493 CCTCTCTTAGAAAAA GCTTCAAACCT-TGT AGAA ACATAGGTTTGAGGC TTTTTTTCATTTATA TERM 98 81525 - 81493 - f 93 -8.6 -4.82901 | gap 1, opp_overlap 81493 CCTCTCTTAGAAAAA GCTTCAAACCT-TGT AGAA ACATAGGTTTGAGGC TTTTTTTCATTTATA TERM 99 82018 - 82028 + G 77 -2.6 -5.55664 | AAAAAAGCAAATTGT TTAT ACT ATAA TTTTTTTGGTAGTAC Cphy_0056 81998 - 82324 + | hypothetical protein Cphy_0057 82850 - 82305 - | hypothetical protein TERM 100 84175 - 84159 - g 70 -3 -5.10154 | overlap 84161 ATGGAAAAGTAAAAA TTGAGA CCTCC TCCCAA GCACCTTATACTGTT TERM 101 84714 - 84702 - g 70 -3.5 -4.91712 | TTGAATTTAGAAAAA TTAAT GCT ATTAA GCCAGGGGATTTAAC Cphy_0058 83519 - 85855 + | aldehyde oxidase and xanthine dehydrogenase molybdopterin binding TERM 102 86362 - 86352 - g 78 -4 -5.28683 | opp_overlap 86352 ATTAAGATCAAAAAA GAAA TGC TTTC TTTGCCTTTCACCCA Cphy_0059 85842 - 86678 + | molybdopterin dehydrogenase FAD-binding Cphy_0060 86662 - 87135 + | 2Fe-2S iron-sulfur cluster binding domain-containing protein TERM 103 87391 - 87403 + F 70 -6.3 -4.18018 | opp_overlap 87390, overlap 87401 TATACGATATGATAG CAAAC GTA GTTTG TTTTCCCTAAAGGGG Cphy_0061 87449 - 87607 + | hypothetical protein TERM 104 87680 - 87647 - T 91 -9.7 -4.48449 | opp_overlap 87647 TTATTAAAACAGAAA GCCATCTTACTATAT ATAA AAATAGTAAGGTGGC TTTTAATCAGTGAAT TERM 105 87647 - 87680 + T 100 -11.9 -4.28548 | opp_overlap 87647 TTATTAAAACAGAAA GCCATCTTACTATAT ATAA AAATAGTAAGGTGGC TTTTAATCAGTGAAT Cphy_0062 88626 - 87739 - | prolipoprotein diacylglyceryl transferase Cphy_0063 89122 - 89832 + | phosphotransferase domain-containing protein Cphy_0064 90717 - 89917 - | XRE family transcriptional regulator TERM 106 90882 - 90845 - R 93 -9.3 -4.74801 | opp_overlap 90843 90847 CAACTGCATTAAAAA TAGTGAGGCATAGGA AGAAAGAA TCTCATGCCTCACTA GATTAAATCATGACA TERM 107 90896 - 90928 + r 73 -7.7 -3.57144 | opp_overlap 90899, overlap 90899 90905 TAGATTAAATCATGA CAAGGAAAAGTTCGC AAA GCGTGCTTTTTCCTG TTTACGGGTGAAAAA Cphy_0065 91751 - 90930 - | XRE family transcriptional regulator TERM 108 91917 - 91932 + r 72 -9 -2.62043 | opp_overlap 91917, overlap 91914 91928 CTGGTAGCGGAAAAA CTTGCC TGTA GGCAAG TAACTTGCTTATAGG TERM 109 91951 - 91917 - R 100 -14.4 -4.62069 | opp_overlap 91914 91917 91928 CTGGTAGCGGAAAAA CTTGCCTGTAGGCAAG TAA CTTGCTTATAGGCAAG TGGGAATATCCGCTT Cphy_0066 93670 - 92474 - | hypothetical protein TERM 110 93019 - 93060 + g 75 -8.9 -3.60638 | opp_overlap 93033 93034, overlap 93034 TTAATTTATTTGCGT TTACTTTTACAGAAGGAGC ATTC GCTCTTTTTGCAAGAGTGA TGTTTACTTCCTTTG TERM 111 93034 - 93045 + g 76 -5.8 -4.57569 | opp_overlap 93034 93033, overlap 93019 TTACTTTTACAGAAG GAGC ATTC GCTC TTTTTGCAAGAGTGA Cphy_0067 96077 - 93690 - | hypothetical protein TERM 112 95945 - 95956 + g 76 -5.8 -4.56597 | TGATGCTTGCTCCGG CAGC ATAC GCTG TTTTTGGAGAAAAGA Cphy_0068 96504 - 98186 + | cell wall hydrolase/autolysin TERM 113 98246 - 98232 - f 72 -8.6 -3.13323 | overlap 98230 AGATAAAAGCAGACA CATTGC TAG GCAATG GGGGAGATATATAGT Cphy_0069 98284 - 98904 + | hypothetical protein TERM 114 98993 - 99031 + F 100 -7.8 -5.77988 | gap 1, opp_overlap 98993 ATGCAGATACAAAAA GAATTCTTTATGAAAGC GTGTTA GCTTT-ATAAGGAATTC TTTTTTTGTATCTGT TERM 115 99031 - 98993 - f 76 -5.6 -5.04597 | gap 1, opp_overlap 98993 ATGCAGATACAAAAA GAATTCTTTATGAAAGC GTGTTA GCTTT-ATAAGGAATTC TTTTTTTGTATCTGT TERM 116 99308 - 99296 - g 74 -4.9 -4.87893 | AACGTTAAGTAAAAA TATCA GCA TGATA GACAGTAAGGTAAGT Cphy_0070 99198 - 100577 + | peptidase U62 modulator of DNA gyrase TERM 117 101337 - 101317 - g 79 -4.8 -5.24796 | GTTATAGAAGAAAAA GAAGAAAT GTTAG ATTCCTTC GATTTTCAATTAGGA Cphy_0071 100774 - 102117 + | peptidase U62 modulator of DNA gyrase Cphy_0072 102256 - 103299 + | hypothetical protein TERM 118 103381 - 103325 - f 100 -12.7 -4.14633 | overlap 103323 GATTTCTAAAAAATA GTTGTAATTTGTATCGTTTGTATTATA ATA TATAATACAAACGATACAAGTAAAATC TGGAAGATAGTTTTT Cphy_0073 103427 - 103810 + | GntR family transcriptional regulator Cphy_0074 103800 - 104237 + | hypothetical protein Cphy_0075 104245 - 105003 + | hypothetical protein TERM 119 105025 - 105057 + F 100 -11.4 -5.9218 | opp_overlap 105025 CATCGGCGTGATGAA TCCACAGGAGCTTA TGAAT TAAGCCTCTGTGGA TTTTTTTATTGTGTA TERM 120 105057 - 105025 - f 87 -11.4 -3.14344 | opp_overlap 105025 CATCGGCGTGATGAA TCCACAGGAGCTTA TGAAT TAAGCCTCTGTGGA TTTTTTTATTGTGTA Cphy_0076 105399 - 106172 + | ABC transporter related Cphy_0077 106174 - 107232 + | ABC-2 type transporter Cphy_0078 107229 - 108488 + | ABC-2 type transporter Cphy_0079 108728 - 109885 + | integral membrane sensor signal transduction histidine kinase Cphy_0080 109893 - 110531 + | two component LuxR family transcriptional regulator TERM 121 110563 - 110604 + F 77 -4.5 -5.18726 | gap 1, opp_overlap 110576 GAAACTATATCAGTA GGTGTTACAAA-AGTCTACC TGT GGGAGATAATTTGTGGCACC TTTTTATTATGACAC TERM 122 110617 - 110650 + F 74 -6.1 -4.4084 | gap 1, opp_overlap 110619 110622 ACCTTTTTATTATGA CACGAGAAAACTC-GT AAA GCAGAGTTTTTCCGTG TTTTCCTATCTAATT TERM 123 111220 - 111188 - g 88 -5.5 -5.72053 | opp_overlap 111208, overlap 111189 111207 GAAGGAAAGAAAAAA CTCGCGACTCTTGCT AAG AGCATGAATCTCGAT GCGATACATGATTCT TERM 124 111219 - 111189 - g 81 -9 -4.00791 | opp_overlap 111208, overlap 111188 111207 AAGGAAAGAAAAAAC TCGCGACTCTTGCT AAG AGCATGAATCTCGA TGCGATACATGATTC Cphy_0081 110768 - 111313 + | rubrerythrin TERM 125 111401 - 111388 - f 90 -9.5 -4.32034 | overlap 111398 CTATCATGATGAAAA GGCGC TAAA GCGCC AGAATGGAGGAGTTT Cphy_0082 111417 - 111740 + | hypothetical protein TERM 126 111910 - 111898 - g 74 -2.7 -5.27335 | TGCCCTAAATAAAAA TAATG ATA CACTA GAGGTGATTAAAGAA TERM 127 111978 - 111990 + G 74 -2.7 -5.42259 | overlap 111979 TAGACCTTGGGTTAA TCAAA ATC TTTGG TTTTTTTAGCAGTAG Cphy_0083 111752 - 112369 + | flavin reductase domain-containing protein TERM 128 112588 - 112630 + F 76 -6.5 -4.63592 | overlap 112586 TGAAGCTAATTATGA CGCCAGTAACCTT-TATAACA TTA TGTTTTGCAAGGT-GCTGGCG TTCTTTTTATTGGAA TERM 129 113759 - 113769 + G 70 -5.4 -4.44667 | CAACTTGGCTTTTAT TCCA GAG TGGA TTTCTTATTAAAAGA Cphy_0084 112892 - 113914 + | D-alanine--D-alanine ligase TERM 130 114095 - 114080 - g 76 -3.4 -5.31275 | opp_overlap 114080 TGTTATGAGAAAAAA TAAAAT TCTG ATTTTA TTTCTTGTAATTTTT Cphy_0085 114069 - 115049 + | hypothetical protein TERM 131 115138 - 115089 - T 90 -8.1 -4.91109 | overlap 115090 TTTTGACTACAAAAA TGGAGCTTTTGTTAAATAGAT GCTTACTT ATCTATTTTGCAAAAGCTCCC TCCTGAAAACAACTC TERM 132 115137 - 115090 - T 90 -11.6 -3.54183 | overlap 115089 TTTGACTACAAAAAT GGAGCTTTTGTTAAATAGAT GCTTACTT ATCTATTTTGCAAAAGCTCC CTCCTGAAAACAACT TERM 133 115186 - 115162 - T 79 -8.7 -3.9377 | opp_overlap 115157 115161 115158 ACAACTCTAATTAAA GTTATCCCT TTAATTT AGGGATAAC AGTATTATAGTAAAA Cphy_0086 115348 - 115163 - | hypothetical protein TERM 134 115394 - 115380 - R 86 -10 -3.58037 | opp_overlap 115373 TAGGAACCTTTTAAA TGGCAG GCG CTGCCA ATACAAATGTTAATC TERM 135 115431 - 115446 + r 73 -7.6 -3.65902 | GGTGACCTCATTTCC GGAAGA TTAG TCTTCC TTTCGATAGGATACG Cphy_0087 117140 - 115437 - | hydrogenase, Fe-only Cphy_0088 119044 - 117158 - | NADH dehydrogenase (quinone) Cphy_0089 119523 - 119038 - | NADH dehydrogenase (ubiquinone) 24 kDa subunit TERM 136 119561 - 119576 + r 71 -9 -2.5655 | opp_overlap 119560 119561, overlap 119560 ATACTTTTAGAAAAG CGACAG ATTA CTGTCG ATTAATCTCAATAGG TERM 137 119576 - 119561 - R 77 -9 -3.23174 | opp_overlap 119561 119560, overlap 119560 ATACTTTTAGAAAAG CGACAG ATTA CTGTCG ATTAATCTCAATAGG TERM 138 119885 - 119829 - R 100 -16.4 -5.47218 | opp_overlap 119829 GCTTATTGAAAAAAA GATGCAAATAGTATGGTTATGAG-AGCA CAT CGCTCCTCAAAAC-ATACTATTTGCATC TTTAATTATATTATG TERM 139 119829 - 119885 + r 100 -15.7 -4.09827 | opp_overlap 119829 GCTTATTGAAAAAAA GATGCAAATAGTATGGTTATGA-GAGC ACATC GCTCCTCAAAAC-ATACTATTTGCATC TTTAATTATATTATG Cphy_0090 121487 - 120033 - | ferredoxin hydrogenase TERM 140 121138 - 121154 + g 71 -5.1 -4.58685 | TGAGACATTGAGATT GCTTGAA AGT TACAAGC TTTTTGACAGCGTTT TERM 141 121378 - 121398 + g 79 -11.3 -2.88252 | opp_overlap 121381, overlap 121370 121381 CCTGGTATCATCTCA TAAGGAAGA ACA TCTTCCTTA TCTGCTAATTGATTT TERM 142 121381 - 121395 + g 75 -8.6 -3.57731 | opp_overlap 121381, overlap 121378 121370 GGTATCATCTCATAA GGAAGA ACA TCTTCC TTATCTGCTAATTGA TERM 143 121395 - 121381 - G 73 -8.6 -3.34043 | opp_overlap 121381 121378 121370 GGTATCATCTCATAA GGAAGA ACA TCTTCC TTATCTGCTAATTGA Cphy_0091 122706 - 121534 - | protein serine/threonine phosphatase Cphy_0092 124488 - 122755 - | putative PAS/PAC sensor protein TERM 144 122807 - 122817 + g 72 -4 -5.03227 | GTATCCCGTAGTTTG GTTA GGG TAAC TTTTGTTTCTGCTGT Cphy_0093 124730 - 124488 - | hypothetical protein TERM 145 124852 - 124822 - R 83 -9.8 -3.91984 | opp_overlap 124820 124823, overlap 124823 AGATTTCTTAAAGAA GCTTAGCATGGATT TTT ATTCCATGCTAAGT GATTGAATTGCAATG TERM 146 124851 - 124823 - R 100 -13.3 -2.94708 | opp_overlap 124820 124823, overlap 124822 GATTTCTTAAAGAAG CTTAGCATGGATT TTT ATTCCATGCTAAG TGATTGAATTGCAAT TERM 147 124823 - 124851 + r 100 -13.3 -2.78891 | opp_overlap 124823 124822, overlap 124820 GATTTCTTAAAGAAG CTTAGCATGGATT TTT ATTCCATGCTAAG TGATTGAATTGCAAT Cphy_0094 125703 - 124837 - | DegV family protein TERM 148 125315 - 125331 + g 82 -10.9 -3.32293 | overlap 125313 125323 TGCTCAACAAGCGTT CTGTGTG GGC CACACAG TGTCTTTGAATTTAG TERM 149 126762 - 126778 + G 71 -5.2 -4.56597 | overlap 126759 TTCGTTCTTTAGTTG CTTATG CAATT CATAAG TTTTTCCAAGAGAGA Cphy_0095 126311 - 127729 + | asparaginyl-tRNA synthetase TERM 150 127881 - 127850 - T 72 -5.9 -4.43272 | opp_overlap 127851, overlap 127851 ATGTAAAATCTAAAA GTCCCTCTCGA AGACCTTTGA TCGAGAGGGAT TTTTTCTATTATACA TERM 151 127880 - 127851 - T 78 -9.4 -3.24879 | opp_overlap 127851, overlap 127850 TGTAAAATCTAAAAG TCCCTCTCGA AGACCTTTGA TCGAGAGGGA TTTTTTCTATTATAC TERM 152 127851 - 127880 + T 100 -9.4 -5.5208 | opp_overlap 127851 127850 TGTAAAATCTAAAAG TCCCTCTCGA AGACCTTTGA TCGAGAGGGA TTTTTTCTATTATAC Cphy_0096 128408 - 127890 - | hypothetical protein TERM 153 128832 - 128882 + H 82 -8.6 -4.0498 | opp_overlap 128839 128873, overlap 128839 128873 128877 ATTGCCCTAATCGGT TAAGAAATGATTATCCTAAACTTT CTC AGGGGTCAGGATAATCATTTTTTG TTGTTCATTTTTATC TERM 154 128839 - 128875 + H 100 -6.7 -5.66229 | opp_overlap 128839 128873, overlap 128832 128873 TAATCGGTTAAGAAA TGATTATCCTAAACTTT CTC AGGGGTCAGGATAATCA TTTTTTGTTGTTCAT TERM 155 128873 - 128916 + H 77 -9.3 -3.24747 | gap 1, opp_overlap 128839 128873, overlap 128839 128832 128877 CAGGGGTCAGGATAA TCATTTTTTGTTGTTCATTT TTATC AAATGAACAAC-AAGAGTGA TTAATGCTATAACAA TERM 156 128877 - 128913 + H 83 -11.2 -2.80988 | opp_overlap 128873, overlap 128832 128873 GGTCAGGATAATCAT TTTTTGTTGTTCATTT TTATC AAATGAACAACAAGAG TGATTAATGCTATAA TERM 157 129067 - 129083 + H 72 -5.9 -4.43012 | overlap 129068 CTCGTAATTATCCTA TGTCAAT AAA ATTGACG TTTTCCTGTTACCAT TERM 158 129447 - 129434 - g 70 -5.3 -4.4009 | GCTGACCGCAGAAAA GTAAG AGGT CTTAC ACAGCAACAGCTTGC Cphy_0097 129389 - 129880 + | XRE family transcriptional regulator Cphy_0098 131072 - 130233 - | MerR family transcriptional regulator TERM 159 131684 - 131697 + G 75 -5.3 -4.85599 | TAATATGATTCGTGA CATCA GAAA TGATG TTTTTATCCAGTCAC Cphy_0099 131424 - 133151 + | ABC transporter related TERM 160 133172 - 133157 - g 73 -3.4 -5.17353 | AGAGCGATGAAAAAA TTATAT CCAT ATATAA AGCCATACTTGAAAT TERM 161 134232 - 134220 - g 70 -3.4 -4.91194 | opp_overlap 134226, overlap 134215 ACAACAAAGATAAAA TGCT GATTG AGCA TCTCAATGTTAACGT Cphy_0100 133148 - 134902 + | ABC transporter related TERM 162 135047 - 135012 - T 95 -9.2 -4.9445 | gap 1, opp_overlap 135012 ATAAGTAATCAAAAA GGTAGGTTGGC-TATCA AAA TAATAAGCCAATCTACC TTTTTGAATATTAAC TERM 163 135012 - 135047 + T 93 -9.2 -4.74706 | gap 1, opp_overlap 135012 ATAAGTAATCAAAAA GGTAGGTTGGC-TATCA AAA TAATAAGCCAATCTACC TTTTTGAATATTAAC Cphy_0101 136272 - 135190 - | metal dependent phosphohydrolase TERM 164 135890 - 135878 - G 73 -6.3 -4.43213 | TGTAACATATCAAAA GTTCT TAA AGAAC TTCGACATTCCTTTA Cphy_0102 136465 - 137550 + | metallophosphoesterase Cphy_0103 137559 - 139694 + | hypothetical protein TERM 165 139718 - 139759 + T 100 -16.1 -3.05816 | opp_overlap 139719 139720 139726, overlap 139722 139726 ATACTTAAATGAGGA ACGAGAAAGAGGTAACTGA ATAA TCAGTTACCTCTTTCTCAC TTCGATGAAACATAA TERM 166 139758 - 139719 - T 100 -21.8 -3.33483 | opp_overlap 139718 139722 139726, overlap 139720 139726 TACTTAAATGAGGAA CGAGAAAGAGGTAACTGA ATAA TCAGTTACCTCTTTCTCA CTTCGATGAAACATA TERM 167 139757 - 139720 - T 100 -23.1 -2.59608 | opp_overlap 139718 139722 139726, overlap 139719 139726 ACTTAAATGAGGAAC GAGAAAGAGGTAACTGA ATAA TCAGTTACCTCTTTCTC ACTTCGATGAAACAT TERM 168 139722 - 139755 + T 100 -19.9 -2.54896 | opp_overlap 139720 139719 139726, overlap 139718 139726 TTAAATGAGGAACGA GAAAGAGGTAACTGA ATAA TCAGTTACCTCTTTC TCACTTCGATGAAAC TERM 169 139751 - 139726 - T 100 -14.9 -4.08546 | opp_overlap 139722 139718 139726, overlap 139720 139719 ATGAGGAACGAGAAA GAGGTAACTGA ATAA TCAGTTACCTC TTTCTCACTTCGATG TERM 170 139726 - 139751 + T 100 -14.9 -3.98083 | opp_overlap 139726 139720 139719, overlap 139722 139718 ATGAGGAACGAGAAA GAGGTAACTGA ATAA TCAGTTACCTC TTTCTCACTTCGATG TERM 171 139832 - 139818 - T 71 -5.6 -4.70319 | opp_overlap 139816 139818 TCATGAAAAGGAAAA GTTCGC GAA GCGTAC TCCTTTTTAGTTATC Cphy_0104 141028 - 139859 - | phosphoribosylpyrophosphate synthetase Cphy_0105 142260 - 141256 - | DNA replication protein DnaC TERM 172 142317 - 142284 - R 100 -14.7 -3.14931 | TCCATTCGTCACCAA TCCGTGAACTTGGGC AACA GCACAAATTCACGGA TTGGCGAAAGCACAA Cphy_0106 143478 - 142366 - | primosome, DnaD subunit TERM 173 143779 - 143793 + r 76 -8.6 -3.42366 | overlap 143791 ACAAAGGGTTTTTAC GAAACG AGT CGTTTC TTGTAGAATTTTAAG TERM 174 143864 - 143823 - R 80 -5.3 -5.186 | opp_overlap 143823 GAAAATATAGAAAAA TCCACAACCCTATCG GATAATAAATGT TGATAAGGTTGTGGA TAATGTGGATAACTA Cphy_0107 145286 - 143877 - | UDP-N-acetylmuramate--alanine ligase Cphy_0109 146427 - 146708 + | SpoVG family protein TERM 175 146735 - 146710 - f 74 -8.5 -3.2006 | overlap 146714 146732 AAGAGGCAGAATAGA TTAACTTAGCT AAGG AGCTAAATTAA AACTGTTTAAAAAAG TERM 176 146768 - 146796 + F 100 -13.3 -4.64766 | opp_overlap 146768 ATTCATGTCCCAAAA TACAGCTGCCA AAGAAAA TGGCAGCTGTA TTTTTAGGCTATGGC TERM 177 146796 - 146768 - f 100 -13.3 -4.09864 | opp_overlap 146768 ATTCATGTCCCAAAA TACAGCTGCCA AAGAAAA TGGCAGCTGTA TTTTTAGGCTATGGC Cphy_0110 147354 - 148388 + | polysaccharide deacetylase TERM 178 148428 - 148486 + F 100 -12.1 -5.06414 | gap 1, opp_overlap 148428 CTAAGAGTAAAATAA GGATAAGTCGATAGATTTTAGTAGAACA TATT TGTTTCACTAAA-TCGATCGTCTTATCC TTTTTGTTCCGAAAA TERM 179 148486 - 148428 - f 100 -12.1 -4.32583 | gap 1, opp_overlap 148428 CTAAGAGTAAAATAA GGATAAGTCGATAGATTTTAGTAGAACA TATT TGTTTCACTAAA-TCGATCGTCTTATCC TTTTTGTTCCGAAAA Cphy_0111 148828 - 149403 + | aminoacyl-tRNA hydrolase TERM 180 152219 - 152251 + G 76 -7.8 -4.16205 | overlap 152239 CAATTATATCAGTTA CGTGG-ACGTGTTGGA CGT TCCAAC-CGTACCTCG TTTGCTTTCCTTATG TERM 181 152854 - 152866 + G 86 -5.5 -5.33848 | overlap 152855 TCTAAAGATGATTCC TGGTG CCA CACCG TTTTTTACTTATCAT TERM 182 152964 - 152953 - g 70 -3 -5.07567 | opp_overlap 152953 TGAGAGTGTAAAAAA TCTA TTAT TAGA GTTTCAAATCCTTGT Cphy_0112 149444 - 152983 + | transcription-repair coupling factor Cphy_0113 153051 - 154184 + | hypothetical protein Cphy_0114 154273 - 155049 + | ABC transporter related TERM 183 155728 - 155714 - g 79 -7.1 -4.40963 | ACTGGTGAAAAAGAA CGCCA AACGA TGGCG AAACTCTTATTAACA Cphy_0115 155051 - 156268 + | ABC-2 type transporter Cphy_0116 156368 - 156760 + | ArsR family transcriptional regulator Cphy_0117 156810 - 157454 + | TrkA domain-containing protein TERM 184 157518 - 157545 + F 100 -14.3 -5.53991 | AATATATATTTTGTA CCGCCAATCAT CTAGTC ATGATTGGCGG TTTTTTTGCTCCATG Cphy_0118 158002 - 159138 + | glycine betaine/L-proline ABC transporter, ATPase subunit TERM 185 159832 - 159846 + G 81 -2.8 -5.65496 | overlap 159825 159834 TTGCAGGAGCAGTAT TTGCTA TTA TAGCCA TTTTTGTTTTTACTG Cphy_0119 159135 - 160706 + | substrate-binding region of ABC-type glycine betaine transport system TERM 186 160707 - 160764 + F 77 -8 -3.87869 | opp_overlap 160707 160712, overlap 160712 160716 ATTCCTTCAAAATAA TAAAAGAAAGACAATCTATAAACGGC AAGCAA GCTTAATATAGATTGTCTTTCTTTGA TTTATAGGAAATTGC TERM 187 160712 - 160759 + F 77 -7.9 -4.13995 | opp_overlap 160712 160707, overlap 160707 160716 TTCAAAATAATAAAA GAAAGACAATCTATAAACGGC AAGCAA GCTTAATATAGATTGTCTTTC TTTGATTTATAGGAA TERM 188 160759 - 160712 - f 80 -5.7 -5.093 | opp_overlap 160707 160712 160716, overlap 160707 TTCAAAATAATAAAA GAAAGACAATCTATAAACGGC AAGCAA GCTTAATATAGATTGTCTTTC TTTGATTTATAGGAA TERM 189 160889 - 160901 + F 77 -9.1 -3.31001 | overlap 160888 160884 CCTGATAAGCCTGGA GTGGC GAA GCCAC CTTGTTTTTATAAAA Cphy_0120 161160 - 161375 + | heavy metal transport/detoxification protein Cphy_0121 161468 - 163318 + | heavy metal translocating P-type ATPase TERM 190 163390 - 163426 + F 100 -10.3 -4.91109 | opp_overlap 163390 ATATACCGGTGAAAA CCCTAAATCCTTTGTAT AAA ATACAATTGGTTTAGGG TTTTTATCGTGACAA TERM 191 163426 - 163390 - f 79 -8.1 -4.10925 | opp_overlap 163390 ATATACCGGTGAAAA CCCTAAATCCTTTGTAT AAA ATACAATTGGTTTAGGG TTTTTATCGTGACAA Cphy_0122 163702 - 164154 + | NUDIX hydrolase Cphy_0123 164245 - 165132 + | FMN-dependent alpha-hydroxy acid dehydrogenase Cphy_0124 165343 - 166179 + | xylose isomerase domain-containing protein TERM 192 166390 - 166335 - T 81 -4.3 -5.51612 | opp_overlap 166338 166343, overlap 166343 AGAGAAAAAATAAAA GAGAAAAACAAGAGAAGATATGGAT AGACTG ATATATATCTTCTCTTGTTTTCATT ATAGTTTAATGAACT TERM 193 166338 - 166387 + T 80 -10.4 -2.77227 | opp_overlap 166335 166343, overlap 166343 GAAAAAATAAAAGAG AAAAACAAGAGAAGATATGGAT AGACTG ATATATATCTTCTCTTGTTTTC ATTATAGTTTAATGA TERM 194 166382 - 166343 - T 100 -8.1 -5.34632 | opp_overlap 166338 166343, overlap 166335 AATAAAAGAGAAAAA CAAGAGAAGATATGGAT AGACTG ATATATATCTTCTCTTG TTTTCATTATAGTTT TERM 195 166343 - 166382 + T 95 -10.3 -4.53685 | opp_overlap 166343 166335, overlap 166338 AATAAAAGAGAAAAA CAAGAGAAGATATGGAT AGACTG ATATATATCTTCTCTTG TTTTCATTATAGTTT Cphy_0125 168566 - 166419 - | sulfatase Cphy_0126 169161 - 169955 + | tRNA pseudouridine synthase A Cphy_0127 170160 - 170705 + | AbrB family transcriptional regulator TERM 196 171089 - 171109 + G 75 -6.9 -4.32201 | GTATCTTAGTATTTT TAATCGCTG CAT TAGCGATTG TTTTCGGTTCCTTAA TERM 197 171342 - 171360 + G 83 -9 -4.23281 | overlap 171359 TAGTTTGATTGGTTT TATCATAC TTT GTATGATA TTTATATTGAATATT Cphy_0128 170950 - 172281 + | amino acid permease-associated region Cphy_0129 172472 - 172795 + | methylated-DNA--protein-cysteine methyltransferase TERM 198 172917 - 172948 + G 81 -8.1 -4.25848 | gap 1 AGTGTTAGCTATTGA CGGCGGAGG-AATG AAGGG CATTGTCTCCGCTG TTTTGCTACGCAGTT Cphy_0130 172888 - 173892 + | patatin TERM 199 174091 - 174136 + F 100 -16.5 -3.59247 | opp_overlap 174091 174098, overlap 174098 174111 CTTCATGAATAATAA TTTAAAATACCAAAAGAAGCG TTGA CGCAACTTTTGGTATTTTAAA TTTAAAGAATTGTTC TERM 200 174136 - 174091 - f 100 -16.5 -3.99374 | opp_overlap 174091 174098 174111, overlap 174098 CTTCATGAATAATAA TTTAAAATACCAAAAGAAGCG TTGA CGCAACTTTTGGTATTTTAAA TTTAAAGAATTGTTC TERM 201 174098 - 174129 + F 93 -10.2 -4.35524 | opp_overlap 174091 174098, overlap 174091 174111 AATAATAATTTAAAA TACCAAAAGAAGCG TTGA CGCAACTTTTGGTA TTTTAAATTTAAAGA TERM 202 174129 - 174098 - f 93 -10.2 -4.38637 | opp_overlap 174098 174091 174111, overlap 174091 AATAATAATTTAAAA TACCAAAAGAAGCG TTGA CGCAACTTTTGGTA TTTTAAATTTAAAGA TERM 203 174111 - 174121 + F 71 -5.4 -4.55826 | opp_overlap 174098 174091, overlap 174098 174091 AATACCAAAAGAAGC GTTG ACG CAAC TTTTGGTATTTTAAA Cphy_0131 174425 - 176359 + | hypothetical protein TERM 204 176909 - 176888 - g 72 -8.1 -3.61438 | gap 1 CTATACTAAAGAAGA GCTGTTC-TC TCA GATGAACAGC GAAGCAACAAGGCTA Cphy_0132 176379 - 177092 + | MazG family protein Cphy_0133 177506 - 177781 + | histone family protein DNA-binding protein TERM 205 177906 - 177863 - f 89 -10.4 -3.86252 | opp_overlap 177870, overlap 177866 177868 177870 TTCTAGTAAACATAA GAACATAGGCTGTTTTGAGG GATT CTTCAAAACAGCCTTTTTCC ATAGTTAATGTATCT TERM 206 177903 - 177866 - f 82 -8.5 -4.05193 | opp_overlap 177870, overlap 177863 177868 177870 TAGTAAACATAAGAA CATAGGCTGTTTTGAGG GATT CTTCAAAACAGCCTTTT TCCATAGTTAATGTA TERM 207 177901 - 177868 - f 89 -11.1 -3.60201 | opp_overlap 177870, overlap 177866 177863 177870 GTAAACATAAGAACA TAGGCTGTTTTGAGG GATT CTTCAAAACAGCCTT TTTCCATAGTTAATG TERM 208 177899 - 177870 - f 100 -13.7 -3.35906 | opp_overlap 177870, overlap 177868 177866 177863 AAACATAAGAACATA GGCTGTTTTGAGG GATT CTTCAAAACAGCC TTTTTCCATAGTTAA TERM 209 177870 - 177899 + F 100 -15.9 -4.7078 | opp_overlap 177870 177868 177866 177863 AAACATAAGAACATA GGCTGTTTTGAGG GATT CTTCAAAACAGCC TTTTTCCATAGTTAA Cphy_0134 177952 - 178191 + | RNA-binding S4 domain-containing protein Cphy_0135 178292 - 178576 + | sporulation protein YabP TERM 210 179140 - 179122 - g 83 -8.8 -4.25231 | overlap 179119 AAGAAAAGGAAACAA GTGGAGGA AGC TCCTCCGC CAAAAGTAGAACGTC Cphy_0136 178585 - 179220 + | hypothetical protein Cphy_0137 179261 - 179506 + | septum formation initiator TERM 211 179513 - 179534 + F 93 -5.1 -6.09888 | opp_overlap 179513 AAGAAATAAAGAGAA GGTATCGGA TGTG TGCGATGCC TTTTTTTTGTTCACC TERM 212 179758 - 179738 - f 100 -11.2 -5.07486 | opp_overlap 179738 TATTTTTAATAAAAA GCACAGGA TAATC TCCTGTGC TTTTTTTGTGTGCGC TERM 213 179738 - 179758 + F 100 -11.2 -5.71712 | opp_overlap 179738 TATTTTTAATAAAAA GCACAGGA TAATC TCCTGTGC TTTTTTTGTGTGCGC Cphy_0138 180381 - 181964 + | protein serine/threonine phosphatase TERM 214 183549 - 183539 - g 70 -5.4 -4.46212 | TGGTTGATCAGAAAA TTCC GCG GGAA GAACGTGATAAAATA Cphy_0139 182200 - 183678 + | tRNA(Ile)-lysidine synthetase Cphy_0140 183710 - 184234 + | hypoxanthine phosphoribosyltransferase TERM 215 184798 - 184784 - g 75 -7.2 -4.32951 | AAAGAAGAGCTAAAA GAAATC GTT GATTTC CTAAAGAATCCTAAG TERM 216 185213 - 185223 + G 70 -6.8 -4.11394 | GACCCAGCGATTTTA CGTC CAG GACG TTTTGACCGTAAGGT Cphy_0141 184253 - 186082 + | ATP-dependent metalloprotease FtsH TERM 217 186138 - 186103 - f 100 -11.2 -4.69326 | opp_overlap 186105, overlap 186105 ATATGTAATACAAAA TAGCACCTGAATTCAC TTAA GTGGATCCAGGTGCTT AATTAATGGTCAGAA TERM 218 186136 - 186105 - f 100 -13.8 -3.95375 | opp_overlap 186105, overlap 186103 ATGTAATACAAAATA GCACCTGAATTCAC TTAA GTGGATCCAGGTGC TTAATTAATGGTCAG TERM 219 186105 - 186136 + F 100 -13.8 -3.41693 | opp_overlap 186105 186103 ATGTAATACAAAATA GCACCTGAATTCAC TTAA GTGGATCCAGGTGC TTAATTAATGGTCAG Cphy_0142 186300 - 186788 + | GCN5-related N-acetyltransferase TERM 220 187098 - 187076 - f 86 -9.8 -4.07885 | opp_overlap 187076, overlap 187063 TACCTTCTCCGAAAA GGACAGCACC CGT GAAGCTGTCC TTTTTACTTTATAAA TERM 221 187076 - 187098 + F 89 -7.6 -5.04601 | opp_overlap 187063 187076 TACCTTCTCCGAAAA GGACAGCACC CGT GAAGCTGTCC TTTTTACTTTATAAA TERM 222 187188 - 187201 + F 79 -2.5 -5.81412 | ATGAAAAAATTACCA TTAAA ATAT TTTAA TTTTTTTTCAATAAG TERM 223 187445 - 187461 + F 70 -8.1 -3.05816 | opp_overlap 187445 187447, overlap 187447 GTCGCCGGCATCTAA TATCCTA CCT TAGGATA TTAGATACGAAATCA TERM 224 187461 - 187445 - f 70 -8.1 -3.05384 | opp_overlap 187445 187447, overlap 187447 GTCGCCGGCATCTAA TATCCTA CCT TAGGATA TTAGATACGAAATCA TERM 225 188655 - 188641 - g 85 -2.8 -5.88565 | GCCAGAATAAAAAAA GCAGAT AAC ATCCAC CAACACCTAGATTTA Cphy_0143 187663 - 189414 + | cobalamin B12-binding domain-containing protein TERM 226 189609 - 189631 + G 73 -9.2 -2.82895 | opp_overlap 189599, overlap 189608 TAAATCACGAAACGC CGTGGCAGTT GCT AATTGCTACG ATTCTTAGTGCACAG TERM 227 189980 - 189965 - g 70 -3.2 -5.03314 | overlap 189966 CGTATCTCGAAAAAA CTTGGG TTTA CCAAAG AAGATGACCCTGTAA Cphy_0144 189479 - 190168 + | endonuclease III TERM 228 190281 - 190259 - g 74 -8.4 -3.66896 | overlap 190263 GCTATAGATATAGAA TCTACCGGAC TTA GTCCGGAAAA AGACCGAATCATTGA TERM 229 190277 - 190263 - g 81 -11.4 -2.65591 | overlap 190259 TAGATATAGAATCTA CCGGAC TTA GTCCGG AAAAAGACCGAATCA Cphy_0145 190232 - 190939 + | DNA polymerase III, epsilon subunit Cphy_0146 191600 - 190986 - | hypothetical protein TERM 230 191955 - 191992 + G 80 -8.6 -3.98282 | gap 1, opp_overlap 191954 191951 GGATGCAATAATGAG GCCCCA-CCAAAGGA ACAGGATCA TTCTTTGGATGGGGC TTTACTTGATGTAAC Cphy_0147 191877 - 192836 + | VanW family protein Cphy_0148 193050 - 194048 + | AIR synthase-like protein TERM 231 194034 - 194051 + F 74 -8.5 -3.33661 | opp_overlap 194034, overlap 194032 GATGAGATATATAAA GGTCTAT CCGA ATAGACC TATTATAATTAAGTA TERM 232 194051 - 194034 - f 87 -8.5 -4.18367 | opp_overlap 194034 194032 GATGAGATATATAAA GGTCTAT CCGA ATAGACC TATTATAATTAAGTA Cphy_0149 194082 - 194564 + | AsnC family transcriptional regulator Cphy_0150 194561 - 195721 + | aminotransferase class I and II TERM 233 195821 - 195859 + F 78 -9 -3.47617 | opp_overlap 195819 195822, overlap 195822 TTATCGCTTAATAGT AGCTGTGTGAAAGAAAAT TTA AATTTATTTCACACAGCC TTATGGATTTAGCGT TERM 234 195822 - 195858 + F 89 -12.5 -2.68088 | opp_overlap 195822 195819, overlap 195821 TATCGCTTAATAGTA GCTGTGTGAAAGAAAAT TTA AATTTATTTCACACAGC CTTATGGATTTAGCG TERM 235 195858 - 195822 - f 89 -12.5 -2.74192 | opp_overlap 195821 195822, overlap 195819 TATCGCTTAATAGTA GCTGTGTGAAAGAAAAT TTA AATTTATTTCACACAGC CTTATGGATTTAGCG Cphy_0151 195976 - 196446 + | CheC domain-containing protein TERM 236 196456 - 196490 + F 80 -9.2 -3.63744 | opp_overlap 196455 196458, overlap 196455 196458 AAGTAAGGATTAGAC TACTCGGGTGCTGCCA TTA TGGTAGCACCCGTAAA TGTTTTAAGAAAAAA TERM 237 196458 - 196489 + F 77 -10.2 -2.78032 | gap 1, opp_overlap 196458 196455, overlap 196456 196455 GTAAGGATTAGACTA CT-CGGGTGCTGCCA TTA TGGTAGCACCCGTAA ATGTTTTAAGAAAAA TERM 238 196488 - 196458 - f 87 -11.8 -2.68487 | opp_overlap 196456 196455 196458, overlap 196455 GTAAGGATTAGACTA CTCGGGTGCTGCCA TTA TGGTAGCACCCGTA AATGTTTTAAGAAAA Cphy_0152 196601 - 197101 + | tRNA/rRNA methyltransferase (SpoU) TERM 239 197172 - 197184 + F 74 -6.3 -4.4388 | TTGCATAGTTCTTTA GGATA TCG TATCC TTTGTTGCTTTATGT TERM 240 197444 - 197405 - f 76 -8.6 -3.53012 | overlap 197410 CTTCGTTCTTTCAAA CAGAAGTTTCTGCCTACG TAAT CCTCGGCACAAACTTCCG GCCTACTACAAAGCA Cphy_0153 197521 - 199911 + | MutS2 family protein Cphy_0154 199945 - 200661 + | two component transcriptional regulator Cphy_0155 200702 - 202090 + | integral membrane sensor signal transduction histidine kinase TERM 241 202356 - 202345 - g 76 -5.8 -4.65078 | opp_overlap 202344 202345 202347, overlap 202346 202347 ACAGGGTTAAGAAAA TGGC GTAT GCCA CTGCCTTTGCTGTGG Cphy_0156 202257 - 203633 + | PDZ/DHR/GLGF domain-containing protein TERM 242 203679 - 203690 + T 72 -5.8 -4.43213 | opp_overlap 203674 AGTAATCAATCTATG GAGC ATAA GCTC TTTTGATGTCTTAAA TERM 243 203711 - 203740 + T 100 -13.8 -2.75528 | opp_overlap 203711 203716, overlap 203716 ATGTCTTAAAAGGAA CAAAAGCAGATC CAGAGA GATCTGCTTTTG TAGTATATTAAGCAT TERM 244 203740 - 203711 - T 100 -14.5 -3.67175 | opp_overlap 203711 203716, overlap 203716 ATGTCTTAAAAGGAA CAAAAGCAGATCC AGAG AGATCTGCTTTTG TAGTATATTAAGCAT TERM 245 203716 - 203735 + T 82 -7.9 -4.5477 | opp_overlap 203716 203711, overlap 203711 TTAAAAGGAACAAAA GCAGATC CAGAGA GATCTGC TTTTGTAGTATATTA TERM 246 203735 - 203716 - T 93 -8.6 -4.89562 | opp_overlap 203711 203716, overlap 203711 TTAAAAGGAACAAAA GCAGATCC AGAG AGATCTGC TTTTGTAGTATATTA Cphy_0157 204632 - 203748 - | GCN5-related N-acetyltransferase TERM 247 204187 - 204198 + g 74 -3 -5.26875 | GGTTCGAAATCTTTA CAAT CTAA ATTG TTTTTTAATTCGGAA Cphy_0158 204918 - 205865 + | metal dependent phosphohydrolase TERM 248 205907 - 205941 + F 87 -8.8 -4.18018 | gap 1, opp_overlap 205910 205912, overlap 205911 ACCATAGTATTATTA GAAGATTTGTGCCAT TTTATT GTGGCACAAA-CTTC TTTTGCGTAAGAGCA TERM 249 206065 - 206042 - f 78 -9 -3.40685 | gap 1, overlap 206045 AGAAAGAGAGAGTAA CAAGTTTGTGC TAC GC-CAAACTTG AGCCATTAGTTACTC Cphy_0159 206112 - 207518 + | RNA methyltransferase Cphy_0160 207721 - 208305 + | metal dependent phosphohydrolase Cphy_0161 208327 - 208629 + | YkgB Cphy_0162 208651 - 209175 + | hypothetical protein Cphy_0163 209338 - 209613 + | GCN5-related N-acetyltransferase Cphy_0164 209694 - 210575 + | beta-lactamase domain-containing protein TERM 250 210582 - 210605 + F 74 -9.6 -2.76453 | opp_overlap 210579 210576, overlap 210573 GGTAGCTAATGAGTG GGGGAAGTGT CAAT ACACTTGCCC TGCTTACGATTGTAG TERM 251 210989 - 211003 + G 80 -8.6 -3.94393 | GATGGAGGAAGTTGC TAGCCA GAT TGGCTA TTCTCTTTATCATTT Cphy_0165 210894 - 211790 + | AraC family transcriptional regulator TERM 252 212679 - 212659 - f 74 -6.9 -4.29106 | overlap 212661 CTTGACACGAACAAA TAGTGCAAA TAG TTTGCACAA AAGTGAGGAAAATTA TERM 253 212677 - 212661 - f 82 -9.5 -3.7456 | overlap 212659 TGACACGAACAAATA GTGCAAA TAG TTTGCAC AAAAGTGAGGAAAAT Cphy_0168 212694 - 213392 + | transglutaminase domain-containing protein TERM 254 213494 - 213441 - T 70 -8.1 -3.05613 | overlap 213440 ACAAAATATAATAAG GCCCATTCTAACCAGAACGTACGTC TAGC GCTAAACGCTCCGGTTAAAAAGGGC TATTTTTTTCTTGCT Cphy_0169 213919 - 213494 - | XRE family transcriptional regulator Cphy_0170 214132 - 214602 + | DNA repair protein RadC TERM 255 214642 - 214693 + T 89 -8.8 -4.70353 | opp_overlap 214642 TTATGAATAAAAAAA TCCTGGAAATGATATTAAGGCGGG AATT CTAGCCTTGATAAACTTTCCAGGA TTTTCGTTTATTCTA TERM 256 214693 - 214642 - T 87 -4.4 -5.84381 | opp_overlap 214642 TTATGAATAAAAAAA TCCTGGAAATGATATTAAGGCGGG AATT CTAGCCTTGATAAACTTTCCAGGA TTTTCGTTTATTCTA Cphy_0171 216945 - 214786 - | AraC family transcriptional regulator Cphy_0172 217242 - 218183 + | helix-turn-helix domain-containing protein Cphy_0173 218439 - 219458 + | diguanylate cyclase Cphy_0174 219658 - 219915 + | hypothetical protein TERM 257 220160 - 220218 + T 90 -12.2 -2.85602 | opp_overlap 220160, overlap 220166 CAAAACTAAAAAGGA TGGTCACTCATAGCT-ATGAATTAGCTA TGAAT TAGCTA-TGAATTAGCTATGAGTGACCA TCCCTTCTTTTTTTA TERM 258 220218 - 220160 - T 91 -12.2 -3.38208 | opp_overlap 220160 220166 CAAAACTAAAAAGGA TGGTCACTCATAGCT-ATGAATTAGCTA TGAAT TAGCTA-TGAATTAGCTATGAGTGACCA TCCCTTCTTTTTTTA Cphy_0175 222049 - 220274 - | 67 kDa myosin-cross-reactive antigen family protein TERM 259 222133 - 222163 + r 70 -8.2 -3.13376 | opp_overlap 222134 222136, overlap 222131 222130 222126 ACAATGGACAATGAA ATAGCGGTGGTCGA AAG TCGAACACCGCCAC TAATTTGTTGGGTTT TERM 260 222162 - 222134 - R 100 -13.9 -4.01939 | opp_overlap 222133 222131 222130 222126, overlap 222136 CAATGGACAATGAAA TAGCGGTGGTCGA AAG TCGAACACCGCCA CTAATTTGTTGGGTT TERM 261 222160 - 222136 - R 100 -14.3 -3.59312 | opp_overlap 222133 222131 222130 222126, overlap 222134 ATGGACAATGAAATA GCGGTGGTCGA AAG TCGAACACCGC CACTAATTTGTTGGG Cphy_0176 222819 - 222247 - | TetR family transcriptional regulator Cphy_0177 223270 - 223944 + | hypothetical protein Cphy_0178 224031 - 224828 + | methyltransferase type 11 Cphy_0179 225030 - 225293 + | ArsR family transcriptional regulator Cphy_0180 225379 - 226032 + | hypothetical protein TERM 262 227091 - 227045 - g 100 -9.5 -5.68438 | opp_overlap 227046 227047, overlap 227047 TTAGTAAAGAAAAAA GATGTGGTATTGCTACCACAA ATCCA TGGTGGTAGCAGTACCACAAT TTATCGTAGTGGAAC TERM 263 227046 - 227090 + G 100 -15.2 -3.99324 | opp_overlap 227045 227047, overlap 227047 TAGTAAAGAAAAAAG ATGTGGTATTGCTACCACAA ATCCA TGGTGGTAGCAGTACCACAA TTTATCGTAGTGGAA TERM 264 227089 - 227047 - g 100 -16.5 -4.47052 | opp_overlap 227047 227046, overlap 227045 AGTAAAGAAAAAAGA TGTGGTATTGCTACCACAA ATCCA TGGTGGTAGCAGTACCACA ATTTATCGTAGTGGA TERM 265 227047 - 227089 + G 100 -18.7 -2.99273 | opp_overlap 227045 227047, overlap 227046 AGTAAAGAAAAAAGA TGTGGTATTGCTACCACAA ATCCA TGGTGGTAGCAGTACCACA ATTTATCGTAGTGGA Cphy_0181 226406 - 227530 + | aminotransferase class V Cphy_0182 227708 - 228574 + | PP-loop domain-containing protein TERM 266 228726 - 228671 - f 100 -20.2 -4.10925 | opp_overlap 228671 ATATATTTGGTAAAA TCCCCATACTATAATGTCAATTCA TGGTGGAG TGAAATGACATTATAGCATGGGGA TTTACTGACTAAATT TERM 267 228671 - 228726 + F 100 -18.7 -3.76968 | opp_overlap 228671 ATATATTTGGTAAAA TCCCCATACTATAATGTCAATTCAT GGTGGA GTGAAATGACATTATAGCATGGGGA TTTACTGACTAAATT TERM 268 228936 - 228954 + F 71 -6.8 -4.11805 | opp_overlap 228938 TAGTATCATTTTTAA TATGACGT TGG ATGTCATA TTTATATAGTATACT TERM 269 229668 - 229651 - g 75 -5.7 -4.87592 | opp_overlap 229651 GGATACAGAAGAAAA TTTAAGA GGTA TCTTAAA TTACTGCGTAGAAGC Cphy_0183 229100 - 229969 + | radical SAM domain-containing protein Cphy_0184 230082 - 230633 + | hypothetical protein TERM 270 230767 - 230727 - f 88 -11.5 -3.22878 | opp_overlap 230727 230733 230766, overlap 230720 230732 230733 GAATTAAAGCGAAGA GAAAAGGATATGAAAATCT TAA ATATTTTCATATCTTTTTC TTTTGGGAAAGATAT TERM 271 230727 - 230767 + F 100 -13.7 -4.08394 | opp_overlap 230727 230720 230732 230733, overlap 230733 230766 GAATTAAAGCGAAGA GAAAAGGATATGAAAATCT TAA ATATTTTCATATCTTTTTC TTTTGGGAAAGATAT TERM 272 230762 - 230732 - f 71 -5.6 -4.71234 | opp_overlap 230727 230733, overlap 230727 230720 230733 AAAGCGAAGAGAAAA GGATATGAAAATCT TAA ATATTTTCATATCT TTTTCTTTTGGGAAA TERM 273 230733 - 230761 + F 100 -9.1 -5.45802 | opp_overlap 230733 230732 230727 230720, overlap 230727 AAGCGAAGAGAAAAG GATATGAAAATCT TAA ATATTTTCATATC TTTTTCTTTTGGGAA TERM 274 230761 - 230733 - f 78 -9.1 -3.41114 | opp_overlap 230727 230733, overlap 230732 230727 230720 AAGCGAAGAGAAAAG GATATGAAAATCT TAA ATATTTTCATATC TTTTTCTTTTGGGAA TERM 275 231260 - 231242 - g 71 -4.6 -4.82756 | opp_overlap 231234 231242, overlap 231234 ACAGAAGCAAGAAAA CTTGATTT AAC AAAACAAG ATATTATTGAGTTAA Cphy_0185 230930 - 231298 + | GntR family transcriptional regulator Cphy_0186 231295 - 232161 + | ABC transporter related Cphy_0187 232161 - 232895 + | hypothetical protein TERM 276 232961 - 232911 - T 70 -8.4 -3.06361 | opp_overlap 232915 232920, overlap 232920 TATTAAGGATACACA CAATAAAAAGCGGCTTGCGGTA AATAACA TATCGCAAGACGCTTTTATTTG AAAAGGCACCCACTT TERM 277 232915 - 232957 + T 84 -10 -3.53012 | opp_overlap 232911 232920, overlap 232920 AAGGATACACACAAT AAAAAGCGGCTTGCGGTA AATAACA TATCGCAAGACGCTTTTA TTTGAAAAGGCACCC TERM 278 232920 - 232952 + T 100 -9.9 -4.86731 | opp_overlap 232911 232920, overlap 232915 TACACACAATAAAAA GCGGCTTGCGGTA AATAACA TATCGCAAGACGC TTTTATTTGAAAAGG TERM 279 232952 - 232920 - T 91 -7.7 -5.27206 | opp_overlap 232920 232915, overlap 232911 TACACACAATAAAAA GCGGCTTGCGGTA AATAACA TATCGCAAGACGC TTTTATTTGAAAAGG Cphy_0188 234154 - 232976 - | amidohydrolase TERM 280 234216 - 234247 + H 83 -9.6 -3.93236 | gap 1, opp_overlap 234224 234226, overlap 234224 TTAGTTTATTCATGA CAGGAAAA-GTTCGC GTA GCGAGCTTTTTTCTG TTTATGGCATTACTA TERM 281 234224 - 234238 + H 100 -7.8 -5.59879 | opp_overlap 234224 234226, overlap 234216 TTCATGACAGGAAAA GTTCGC GTA GCGAGC TTTTTTCTGTTTATG Cphy_0189 234483 - 234971 + | CMP/dCMP deaminase zinc-binding Cphy_0190 235186 - 236616 + | beta-lactamase TERM 282 237144 - 237165 + G 70 -8.7 -3.04517 | opp_overlap 237144, overlap 237143 GACTGGAACAGGAGA GTGTTGTCC AGAG GGACCACAC ATTTTAAAAAAGGAT TERM 283 237759 - 237748 - g 74 -4.4 -5.04733 | GAAGCAGAAACAAAA GTAG AATT CTAC CCAACCAAAGATGGT Cphy_0191 236617 - 238155 + | glycoside hydrolase family protein TERM 284 238252 - 238214 - T 100 -21.2 -4.14874 | opp_overlap 238214 ACAACAGCCTCAAAA GGAGGAGAAGCGACACCA AAT TGGTCTCACTTCTCCTCC TTTATTAATGTCTTT TERM 285 238214 - 238252 + T 100 -19 -4.33803 | opp_overlap 238214 ACAACAGCCTCAAAA GGAGGAGAAGCGACACCA AAT TGGTCTCACTTCTCCTCC TTTATTAATGTCTTT Cphy_0192 240091 - 238298 - | ABC transporter related Cphy_0193 242037 - 240094 - | ABC transporter related Cphy_0194 242735 - 242049 - | hypothetical protein TERM 286 242884 - 242915 + r 80 -5.8 -5.02439 | opp_overlap 242884 242887, overlap 242887 TTCCAATGGAAAGAA GAAGACCACGAACA AATC TGCTCATGGTCTCC TTTTTATAATTGTAT TERM 287 242915 - 242884 - R 100 -12.4 -4.0098 | opp_overlap 242884 242887, overlap 242887 TTCCAATGGAAAGAA GAAGACCACGAACA AATC TGCTCATGGTCTCC TTTTTATAATTGTAT TERM 288 242912 - 242887 - R 91 -10.5 -4.1235 | opp_overlap 242887 242884, overlap 242884 CAATGGAAAGAAGAA GACCACGAACA AATC TGCTCATGGTC TCCTTTTTATAATTG Cphy_0195 244052 - 242919 - | integral membrane sensor signal transduction histidine kinase Cphy_0196 244729 - 244049 - | two component transcriptional regulator Cphy_0197 244835 - 245491 + | hypothetical protein TERM 289 246321 - 246298 - g 73 -6 -4.40605 | ATTGATAAAGAGAAA TGTACAAGCT GCAA AGCCTGTGCA AAAGTCTGTAAAATG Cphy_0198 245608 - 246474 + | 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein Cphy_0199 246458 - 246991 + | alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen TERM 290 247031 - 247002 - T 89 -12.2 -2.68612 | gap 1, overlap 246999 AGTGATATTAGACGA GTGGCGGACAACG ATATA CGCTGTCCGCC-C TATACATAGAGAATT Cphy_0200 248617 - 247133 - | L-fucose isomerase related protein TERM 291 248795 - 248781 - H 77 -2.9 -5.626 | CAGTTTATAAAAAAA TACAA GATAT TTGTA AAAAAAATACAAGAG Cphy_0201 249113 - 251323 + | methyl-accepting chemotaxis sensory transducer TERM 292 251552 - 251573 + G 100 -13.7 -3.38768 | opp_overlap 251546 TATCAAAATTCTGAT CCTGCGCGT ATGA GCGCGCAGG TTATCAGTGGTATCG Cphy_0202 251342 - 252022 + | MgtC/SapB transporter Cphy_0203 252199 - 253326 + | glycosy hydrolase family protein TERM 293 253449 - 253439 - f 86 -3.2 -6.12458 | CAAAAAAACAAAAAA GGAA GCC TCCC AAAAAGTTTAAAATT Cphy_0204 253676 - 254716 + | peptidylprolyl isomerase FKBP-type TERM 294 254804 - 254769 - T 100 -13.5 -3.52652 | opp_overlap 254769 GCCATCTAAGGACAA GGGGTATCTTAAAGT GATTTG ACTTTAGGATACCCC TTTTTAACTCTTATT TERM 295 254769 - 254804 + T 100 -15.7 -4.77216 | opp_overlap 254769 GCCATCTAAGGACAA GGGGTATCTTAAAGT GATTTG ACTTTAGGATACCCC TTTTTAACTCTTATT Cphy_0205 255548 - 254877 - | superoxide dismutase Cphy_0206 255647 - 256024 + | arsenate reductase and related TERM 296 256048 - 256095 + F 95 -12.5 -3.68222 | gap 1, opp_overlap 256057 256061, overlap 256049 256061 ATCCATAATGTATCT GGTATTTAACAAATTTATCCGA CCTGT TCGGATAAATTTGTTAAA-ACA TTATTAAAATTCAAA TERM 297 256049 - 256094 + F 100 -16 -2.80612 | gap 1, opp_overlap 256057 256061, overlap 256048 256061 TCCATAATGTATCTG GTATTTAACAAATTTATCCGA CCTGT TCGGATAAATTTGTTAAA-AC ATTATTAAAATTCAA TERM 298 256087 - 256057 - f 100 -14.3 -3.05816 | opp_overlap 256049 256048 256061, overlap 256061 GTATCTGGTATTTAA CAAATTTATCCGA CCTGT TCGGATAAATTTG TTAAAACATTATTAA TERM 299 256061 - 256083 + F 88 -9.3 -4.1673 | opp_overlap 256057 256061, overlap 256049 256048 CTGGTATTTAACAAA TTTATCCGA CCTGT TCGGATAAA TTTGTTAAAACATTA TERM 300 256083 - 256061 - f 88 -9.3 -4.20516 | opp_overlap 256061 256049 256048, overlap 256057 CTGGTATTTAACAAA TTTATCCGA CCTGT TCGGATAAA TTTGTTAAAACATTA TERM 301 256437 - 256419 - g 74 -2.5 -5.28481 | gap 1, opp_overlap 256406 CATCCAACGAAAAAA CATTG-GA TGCT TCGCAATG AAATAACGGAGTATG Cphy_0207 256191 - 257048 + | hypothetical protein Cphy_0208 257050 - 257670 + | heat shock protein DnaJ domain-containing protein TERM 302 257739 - 257755 + G 83 -5.9 -5.20735 | ACGATACTTAGTTCT GTATTTG AAA CAAGTAC TTTCTTTTTTCTTGC Cphy_0209 257661 - 258230 + | hypothetical protein TERM 303 258391 - 258434 + F 84 -5.4 -5.32599 | opp_overlap 258384 258390 258392 258393, overlap 258393 CTTCATAATGTAAAG AGGCTCCACATTAAATCTTG AGAC TAAGACTTAATGTAGAGCTA TTTTTATGTTTTCTC TERM 304 258433 - 258392 - f 85 -10.4 -3.48766 | opp_overlap 258391 258393, overlap 258384 258390 258393 TTCATAATGTAAAGA GGCTCCACATTAAATCTT GAGACT AAGACTTAATGTAGAGCT ATTTTTATGTTTTCT TERM 305 258393 - 258432 + F 93 -10.2 -4.25747 | opp_overlap 258384 258393 258392 258390, overlap 258391 TCATAATGTAAAGAG GCTCCACATTAAATCTTG AGAC TAAGACTTAATGTAGAGC TATTTTTATGTTTTC TERM 306 258432 - 258393 - f 100 -13.9 -2.68778 | opp_overlap 258391 258393, overlap 258384 258392 258390 TCATAATGTAAAGAG GCTCCACATTAAATCTT GAGACT AAGACTTAATGTAGAGC TATTTTTATGTTTTC Cphy_0210 258892 - 259182 + | sporulation transcriptional regulator SpoIIID TERM 307 259258 - 259291 + F 76 -5.4 -5.05601 | opp_overlap 259259, overlap 259259 GAGCATTAAGTAAGA TCGGAATGTTTG TTGGATAACT CAGACATTCCGG TTTTTCTATGTGCTA Cphy_0211 259945 - 261264 + | electron transport complex, RnfABCDGE type, C subunit TERM 308 262292 - 262270 - g 74 -4.1 -5.08824 | gap 1, overlap 262273 CGTTGATTGAAAAAA TCACGATGCC AAGG GGCTTCG-GA ATGGGAGGTAAGAAA Cphy_0212 261309 - 262319 + | electron transport complex, RnfABCDGE type, D subunit TERM 309 262524 - 262536 + G 74 -4.9 -4.78149 | opp_overlap 262524 GAATGCCAAAGTAGA TTCTT CCA AAGAA TTTTTAACTTCTCAA Cphy_0213 262309 - 262965 + | FMN-binding domain-containing protein TERM 310 263416 - 263428 + G 70 -5.5 -4.41882 | opp_overlap 263409, overlap 263417 CCGTGAAATACTTGG TGCAG GTA CTGCG TTTGGTTTTTCTATT Cphy_0214 262958 - 263719 + | electron transport complex, RnfABCDGE type, E subunit Cphy_0215 263734 - 264309 + | electron transport complex, RnfABCDGE type, A subunit Cphy_0216 264327 - 265175 + | electron transport complex, RnfABCDGE type, B subunit TERM 311 265315 - 265287 - f 100 -13.4 -3.72241 | opp_overlap 265287 TAGGAACGACCCAAA GGATAAGAAGTA CTTTT TACTTCTTATCC TTTTTGAATACAAAA TERM 312 265287 - 265315 + F 100 -13.4 -4.65895 | opp_overlap 265287 TAGGAACGACCCAAA GGATAAGAAGTA CTTTT TACTTCTTATCC TTTTTGAATACAAAA TERM 313 265344 - 265354 + F 76 -5.4 -5.07486 | opp_overlap 265341 AACAAGGAAAAGTTC GCAA GAC TTGC TTTTTCTTGCGGATA Cphy_0217 265478 - 266050 + | hypothetical protein TERM 314 266614 - 266593 - g 76 -5.1 -5.04868 | overlap 266594 266596 TCAAATCAAAGAAAA CGAGGTAAG AATA CTTACCACA ACACATCAAATCAAT Cphy_0218 266504 - 268846 + | alpha-xylosidase YicI TERM 315 268909 - 268880 - f 90 -10.8 -3.80881 | opp_overlap 268878 268877 ACGATAAAGATAGAA CCTTGCATTACC TAGGTT GGTAGTGCAAGG GAGTTCGTGTGGATA Cphy_0219 268918 - 269046 + | hypothetical protein TERM 316 269072 - 269056 - f 71 -5.3 -4.67982 | overlap 269065 TGGTAGGTAATAAAA TTTTAAA TAT TTTAAAA AAAACAACGCAAATG Cphy_0220 269141 - 271306 + | glycoside hydrolase family 3 protein TERM 317 271365 - 271395 + F 82 -7.7 -4.64844 | TATAGAAGAAAAGCA GGGTGAGATAAGC GTTAA GTTTATTTTACCC TTTTCTGTGTATGGA Cphy_0221 271681 - 273153 + | glutamyl-tRNA synthetase TERM 318 273192 - 273230 + F 100 -12.6 -6.02914 | opp_overlap 273192 TAAAATTTTAGAAAA CAGTATTTTCCATGTTCA ATA TGCACAAGGAAGATACTG TTTTTTTTCTGTACG TERM 319 273230 - 273192 - f 95 -10.4 -4.46581 | opp_overlap 273192 TAAAATTTTAGAAAA CAGTATTTTCCATGTTCA ATA TGCACAAGGAAGATACTG TTTTTTTTCTGTACG Cphy_0222 273457 - 275457 + | UvrD/REP helicase TERM 320 275634 - 275660 + T 100 -12.4 -3.95378 | opp_overlap 275640, overlap 275640 TTATAATTCTTATCA AAAAAAGCACGC GAA GCGTGCTTTTTC TTATTTGGGATCTGC TERM 321 275654 - 275640 - T 100 -11.4 -5.52384 | opp_overlap 275634 275640 TTCTTATCAAAAAAA GCACGC GAA GCGTGC TTTTTCTTATTTGGG TERM 322 275640 - 275654 + T 100 -11.4 -5.38549 | opp_overlap 275640, overlap 275634 TTCTTATCAAAAAAA GCACGC GAA GCGTGC TTTTTCTTATTTGGG Cphy_0223 276031 - 275696 - | hypothetical protein TERM 323 278134 - 278147 + G 80 -2.3 -5.67063 | opp_overlap 278133, overlap 278133 CCTGTTTAAATAAGG GAAGG AGTT CCATC TTTTTTTCTGCTACA TERM 324 278204 - 278186 - g 73 -8.8 -3.43264 | overlap 278190 AATTACGTATTATAA GGAACAGC TTG GCGGTTCC GAGGAAGATTATGCT Cphy_0224 276345 - 278903 + | DEAD_2 domain-containing protein TERM 325 278933 - 278897 - T 100 -9 -5.47218 | gap 1, opp_overlap 278897 TTGGAGTCAAAAAAA CGAATAACCTA-AGAAA AATT TTTCTATGGGTTATTCG TTTCTAGCTTTTATT TERM 326 278897 - 278933 + T 93 -11.2 -4.08689 | gap 1, opp_overlap 278897 TTGGAGTCAAAAAAA CGAATAACCTA-AGAAA AATT TTTCTATGGGTTATTCG TTTCTAGCTTTTATT Cphy_0225 279992 - 279075 - | diacylglycerol kinase catalytic region TERM 327 279661 - 279678 + g 74 -4.1 -5.19212 | GGATTTAATACTCTA TCTAGTG CCTC CGCTGGA TTTTTTGGTAATAAT TERM 328 279803 - 279814 + g 74 -3 -5.39681 | TTCCGTCTCCACCGA CAAT AACA ATTG TTTTTCTTTCGTTAT Cphy_0226 280345 - 282126 + | hypothetical protein TERM 329 282137 - 282163 + T 100 -18.2 -3.95378 | opp_overlap 282143, overlap 282143 AGTAATTCATGATTA GAAAAAGCACGC GAA GCGTGCTTTTTC TTATTTAAACTATAC TERM 330 282143 - 282157 + T 100 -11.4 -5.38549 | opp_overlap 282143, overlap 282137 TCATGATTAGAAAAA GCACGC GAA GCGTGC TTTTTCTTATTTAAA TERM 331 282157 - 282143 - T 100 -11.4 -4.93296 | opp_overlap 282143 282137 TCATGATTAGAAAAA GCACGC GAA GCGTGC TTTTTCTTATTTAAA Cphy_0227 283226 - 282192 - | ribokinase-like domain-containing protein TERM 332 282515 - 282526 + g 70 -3 -5.09762 | TTACGATACGTTCTG TTGT TGCT ACAA TTTTTATATTAAAAT Cphy_0228 283704 - 284357 + | hypothetical protein Cphy_0229 284607 - 285221 + | ECF subfamily RNA polymerase sigma-24 factor Cphy_0230 285208 - 285843 + | hypothetical protein TERM 333 285920 - 285933 + G 76 -6.7 -4.44748 | TTTACCATTTTTATT TCGGT ATTT ACCGA TTGTTTTAATTTTAT Cphy_0231 285891 - 287309 + | membrane bound O-acyl transferase MBOAT family protein TERM 334 288050 - 288036 - g 78 -6.4 -4.64334 | overlap 288038 AATGGGCTAATAAAA TCGGTG AGA CACCAA TGAGTCAAGATGAAT Cphy_0232 287321 - 288520 + | hypothetical protein TERM 335 288593 - 288624 + T 74 -8.9 -3.09061 | opp_overlap 288610 288612, overlap 288592 CGGAACACGTTTTTG GTTCCGATAATAA AACTTA TGATTATCGGAAC ATGTTTTTGTTCCGA TERM 336 288691 - 288665 - T 100 -16.8 -5.89921 | opp_overlap 288665 ACGAGAATAAAAAAA TAACAGAAAGCG AAG CGCTTTCTGTTA TTTTTTATTCTTGAG TERM 337 288665 - 288691 + T 100 -16.8 -5.64873 | opp_overlap 288665 ACGAGAATAAAAAAA TAACAGAAAGCG AAG CGCTTTCTGTTA TTTTTTATTCTTGAG Cphy_0233 289409 - 288696 - | phospholipid/glycerol acyltransferase TERM 338 289210 - 289224 + g 75 -8.6 -3.55447 | overlap 289200 AATAGGATGTATCCA TCTTCC TTC GGAAGA TTCTCTAATCCGTGG Cphy_0234 290617 - 289502 - | RpoD family RNA polymerase sigma factor TERM 339 291087 - 291106 + H 100 -12.2 -4.98352 | opp_overlap 291074 291083 ACCAACCACAAGGGG CTGCCACT GAAA AGTGGCAG TTTCTTTTATTTCGT TERM 340 291359 - 291336 - H 73 -4.6 -5.05782 | overlap 291337 ATGCATGTGAAAAAA TTTACGCAGA TCAG TCTGCATAAG CAACCACGAATTTTC TERM 341 291358 - 291337 - H 75 -8.1 -3.62746 | overlap 291336 TGCATGTGAAAAAAT TTACGCAGA TCAG TCTGCATAA GCAACCACGAATTTT Cphy_0235 291402 - 291824 + | 30S ribosomal protein S12 Cphy_0236 292063 - 292533 + | 30S ribosomal protein S7 Cphy_0237 292844 - 294961 + | translation elongation factor G Cphy_0238 295200 - 296393 + | elongation factor Tu TERM 342 296462 - 296426 - f 74 -9.5 -2.5602 | opp_overlap 296428, overlap 296437 296438 TAATTACTGAATCTA TTTCCCGTAAATCCTAA TTA TTAGGGTTTACGGGATT TTTTTTACTCATTTG TERM 343 296428 - 296460 + F 100 -18.7 -5.89827 | opp_overlap 296426 296437 296438 ATTACTGAATCTATT TCCCGTAAATCCTAA TTA TTAGGGTTTACGGGA TTTTTTTTACTCATT TERM 344 296543 - 296592 + F 91 -4.6 -6.02914 | gap 2, opp_overlap 296543 GAACCGTCGATCAAA GAAGG-GCTTTTAATAT-TCTACT GTAA AGTAGCTGTATGAAAAGCACCTTC TTTTTTTTATATCGA Cphy_0239 296631 - 297458 + | hypothetical protein Cphy_0240 297866 - 299836 + | diguanylate cyclase/phosphodiesterase Cphy_0241 300436 - 299816 - | hypothetical protein TERM 345 300053 - 300078 + g 91 -9.8 -4.41348 | TTTTTTCTTAAGTTG TGGGAGCAGA GGAGTA TCTGCTTCCA TTTCTTTGGCAAAAC TERM 346 301552 - 301528 - g 71 -8.7 -3.23855 | overlap 301527 TCTTCCAAAAACAAT TTCTGTTACTT CAG AAGAAACAGAA GAGGCATTAAAAGAA TERM 347 301592 - 301569 - g 75 -5.4 -4.7261 | gap 1, opp_overlap 301569 AGGCATTAAAAGAAA CTACTTCT-CA GAT TGTAGAAGCAG TTCATAGTGTACTTG TERM 348 301624 - 301614 - g 70 -3.2 -5.0538 | GTGTACTTGAAAAAA CTCC ACC GGAA TTAGCTGCAGATATC Cphy_0242 300818 - 301807 + | cell shape determining protein MreB Cphy_0243 301931 - 302704 + | flagellar basal body rod protein TERM 349 303015 - 303000 - g 74 -4.7 -4.72729 | opp_overlap 303000 GAAGGAAAAGTAAAA CCTGT TATAGG ACAGG TTGGTTCTGGTGTCA Cphy_0244 302817 - 303632 + | hypothetical protein TERM 350 303715 - 303690 - f 72 -9.1 -2.78935 | opp_overlap 303678 303696, overlap 303678 303692 303705 ATATCTGTTATTAGA CAGAATTTCTG CAAA CAGAATTTCTG TAAACTGAAAGGAAG Cphy_0245 303737 - 304081 + | hypothetical protein TERM 351 304177 - 304119 - f 100 -11.4 -4.84673 | gap 1, opp_overlap 304122 304124 304140, overlap 304124 TTAAATAAGATAAAA GATAAGCCTCATTGGCAAAGACATCAA TATTAC TTGATGTTTTTGCTAATGAGGCT-ATT TACACACTTAAGGCG TERM 352 304122 - 304175 + F 100 -20 -3.57561 | opp_overlap 304119 304124, overlap 304124 304140 AATAAGATAAAAGAT AAGCCTCATTGGCAAAGACATCAA TATTAC TTGATGTTTTTGCTAATGAGGCTA TTTACACACTTAAGG TERM 353 304173 - 304124 - f 100 -18.2 -4.08271 | opp_overlap 304122 304124 304140, overlap 304119 TAAGATAAAAGATAA GCCTCATTGGCAAAGACATCAA TATTAC TTGATGTTTTTGCTAATGAGGC TATTTACACACTTAA TERM 354 304124 - 304173 + F 100 -22.6 -3.36569 | opp_overlap 304124 304119, overlap 304122 304140 TAAGATAAAAGATAA GCCTCATTGGCAAAGACATCAA TATTAC TTGATGTTTTTGCTAATGAGGC TATTTACACACTTAA TERM 355 304261 - 304237 - f 75 -8 -3.59109 | opp_overlap 304236 304237 CCACACAGTAGACAA TGTGAAAGAA TTTTG TTCCTTCACA AATTTTTATAGTGCA TERM 356 305594 - 305618 + G 77 -10.1 -3.2624 | opp_overlap 305599, overlap 305587 305595 TGTGATTATCATCGA TGAGATGTCGA TGG TTGACATCTCG TTAATGCATTCTTTA TERM 357 305595 - 305617 + G 80 -11.4 -2.55021 | opp_overlap 305599, overlap 305594 305587 GTGATTATCATCGAT GAGATGTCGA TGG TTGACATCTC GTTAATGCATTCTTT Cphy_0246 304326 - 306554 + | RecD/TraA family helicase TERM 358 306706 - 306721 + F 71 -7.5 -3.41024 | opp_overlap 306705 TATTGTTGGATGAAC GGCGC AAGGTA GCGCC TATTATATTAGGAGG Cphy_0247 306745 - 307665 + | hypothetical protein Cphy_0248 307688 - 308425 + | amidophosphoribosyltransferase Cphy_0249 308496 - 308897 + | hypothetical protein TERM 359 309052 - 309033 - T 76 -3.6 -5.42514 | opp_overlap 309033, overlap 309025 TTATAAATCAAAAAA TTTTGCAG CCGC CTGGAAAA TGTTTTCGAAGGCTT TERM 360 309104 - 309114 + T 71 -5.4 -4.70659 | opp_overlap 309104 TACATATCATAAGAA GGTT TGG AACC TTTTTGGATGTCAAA TERM 361 309134 - 309173 + T 82 -8.6 -4.0371 | opp_overlap 309134 TGGATGTCAAAAAAA GCGTTGATGTAAGTGTAT GTAG ACACACTCGCACCAACGC TTTCTATAGAACCTA TERM 362 309173 - 309134 - T 100 -13 -5.44119 | opp_overlap 309134 TGGATGTCAAAAAAA GCGTTGATGTAAGTGTAT GTAG ACACACTCGCACCAACGC TTTCTATAGAACCTA Cphy_0250 310025 - 309186 - | RNA-binding S1 domain-containing protein Cphy_0251 310751 - 310038 - | acyl-ACP thioesterase Cphy_0252 311051 - 312250 + | abortive infection protein Cphy_0253 312416 - 312240 - | hypothetical protein Cphy_0254 312520 - 313446 + | thioredoxin reductase TERM 363 313505 - 313550 + F 100 -11.4 -5.13722 | opp_overlap 313502 GATCAGAAGTTATGA TTGGAGAATGATTTAGGGCA TAGTAC TTCCCTATATTATTCTCCAA TTTTATTTTAATACA TERM 364 313612 - 313572 - f 76 -5.6 -5.10064 | gap 1, opp_overlap 313575, overlap 313575 TTTAATACATAAAAA GAAGGTTGGGAATGTGT TAAATGAT ACACAC-CCCAACCTTT ATTATAGAACCCAAT TERM 365 313609 - 313575 - f 80 -7.3 -4.62708 | gap 1, opp_overlap 313575, overlap 313572 AATACATAAAAAGAA GGTTGGGAATGTGT TAAATGAT ACACAC-CCCAACC TTTATTATAGAACCC TERM 366 313640 - 313672 + F 82 -10.1 -3.21416 | opp_overlap 313640 313664, overlap 313643 AATATTCATTAATGA CAAGATAAGTTTGTG AAG CGTAAATTTATCTTG TTCATGATAAAGATA TERM 367 313885 - 313868 - f 70 -4.2 -5.1167 | opp_overlap 313859 313857, overlap 313860 AAGGTAACAGAAAAA TTCTGA TAATTG TCAGAA TACAAAGAAAATATA Cphy_0255 314508 - 315044 + | sigma 54 modulation protein/ribosomal protein S30EA TERM 368 315153 - 315206 + F 89 -11.1 -3.73068 | opp_overlap 315169 315171 315175 ACTGCATTCGGATAA GGCTGTTGTTAAGTAATACAAAGGG GAAG CCCTTTGGAACACTTAGTGGCAGCC TTGTTGCATTGGAAG TERM 369 315188 - 315171 - f 82 -9.9 -3.23853 | opp_overlap 315153, overlap 315169 315175 TGTTGTTAAGTAATA CAAAGGG GAAG CCCTTTG GAACACTTAGTGGCA TERM 370 315505 - 315482 - g 84 -7.5 -4.64591 | overlap 315475 GAACGAGAGATAAAA CTTATCCGC CCTACT GCAGATAAG ATAGAGGCATTAGAA Cphy_0256 315431 - 318007 + | preprotein translocase, SecA subunit TERM 371 318074 - 318042 - f 100 -16.5 -3.64599 | opp_overlap 318045 318051, overlap 318045 318051 TTATGATAGTGGAAA CAAGAAAAAGTACGC GGA GCGAACTTTTTCTTG TTAGGAGGAAAGCGG TERM 372 318071 - 318045 - f 100 -12.4 -3.95378 | opp_overlap 318045 318051, overlap 318042 318051 TGATAGTGGAAACAA GAAAAAGTACGC GGA GCGAACTTTTTC TTGTTAGGAGGAAAG TERM 373 318045 - 318071 + F 95 -12.4 -3.61398 | opp_overlap 318045 318042 318051, overlap 318051 TGATAGTGGAAACAA GAAAAAGTACGC GGA GCGAACTTTTTC TTGTTAGGAGGAAAG TERM 374 318065 - 318051 - f 84 -5.6 -5.38549 | opp_overlap 318045 318051, overlap 318045 318042 TGGAAACAAGAAAAA GTACGC GGA GCGAAC TTTTTCTTGTTAGGA TERM 375 318051 - 318065 + F 80 -5.6 -5.29445 | opp_overlap 318051 318045 318042, overlap 318045 TGGAAACAAGAAAAA GTACGC GGA GCGAAC TTTTTCTTGTTAGGA TERM 376 318102 - 318086 - f 77 -8 -3.78775 | opp_overlap 318086 CTTGTTAGGAGGAAA GCGGAT GTTAT ATCCGC TTTTCTAGGGTGGTG TERM 377 318086 - 318102 + F 88 -8.7 -4.40804 | opp_overlap 318086 CTTGTTAGGAGGAAA GCGGATG TTA TATCCGC TTTTCTAGGGTGGTG TERM 378 318435 - 318472 + G 75 -7.1 -4.28713 | ATGAAGAAGAGGACC CTGATCTGATTCCTG AAATTGAG CAGGAATTGGAGCAG TTTATTGATGCTCTT Cphy_0257 318278 - 319279 + | peptide chain release factor 2 TERM 379 319514 - 319501 - f 77 -8.1 -3.82484 | ATACGATAATTTAAA TGCGC GATA GCGCA GGAATGGAGGGTTAG Cphy_0258 319531 - 319989 + | CheW protein TERM 380 320047 - 320083 + F 83 -4.6 -5.64006 | gap 1 TAGCTATAATAAAAA TCGGTTTTTGCAGGTGG TTAA TCACTTG-AGAAATCGA TTTTTTTAATTAAAT TERM 381 320589 - 320568 - g 71 -7.3 -3.95787 | gap 1 GATGAGATTGATAAA CTGC-GTCAC TCG GCGACTGCAG CATTGACAGAACGAC Cphy_0259 320208 - 322196 + | excinuclease ABC subunit B Cphy_0260 322207 - 325050 + | excinuclease ABC, A subunit TERM 382 325509 - 325493 - g 74 -9.5 -3.1012 | opp_overlap 325491, overlap 325490 AAACTCGTAAAAGGA GCAGATA AAT TATCTGC GCTGATTAAGTGCAT Cphy_0261 325091 - 325672 + | metal dependent phosphohydrolase TERM 383 325749 - 325692 - T 79 -7.3 -4.4078 | gap 1, opp_overlap 325697, overlap 325697 ACAAGAAGGAATAAA TAAAAGGACAATACCAGATTATAATGCT AAT AGCAGAA-AATCTGAGATTGTCCTTTTT GTTTATAACAAGGAA TERM 384 325744 - 325697 - T 91 -7.2 -5.13527 | gap 1, opp_overlap 325697, overlap 325692 AAGGAATAAATAAAA GGACAATACCAGATTATAATGCT AAT AGCAGAA-AATCTGAGATTGTCC TTTTTGTTTATAACA TERM 385 325697 - 325744 + T 82 -5 -5.38054 | gap 1, opp_overlap 325697 325692 AAGGAATAAATAAAA GGACAATACCAGATTATAATGCT AAT AGCAGAA-AATCTGAGATTGTCC TTTTTGTTTATAACA Cphy_0262 326940 - 325777 - | beta-lactamase domain-containing protein Cphy_0263 327680 - 329335 + | von Willebrand factor type A TERM 386 329594 - 329652 + F 93 -10.9 -4.14627 | opp_overlap 329580 329592 329614, overlap 329599 329614 AGAAATTCTAAAACT TCACACTGGAAGAATAAAAATGAAA-TCC ATT GGAATTTCATTTTTATTTTTCCGGT-TCA TTGTTTGTGTCGCCC TERM 387 329599 - 329648 + F 100 -17.7 -3.67305 | gap 1, opp_overlap 329592 329614, overlap 329594 329614 TTCTAAAACTTCACA CTGGAAGAATAAAAATGAAA-TCC ATT GGAATTTCATTTTTATTTTTCCGG TTCATTGTTTGTGTC TERM 388 329614 - 329633 + F 83 -4.4 -5.61881 | gap 1, opp_overlap 329614, overlap 329599 329594 CTGGAAGAATAAAAA TGAAA-TCC ATT GGAATTTCA TTTTTATTTTTCCGG TERM 389 329633 - 329614 - f 83 -5.8 -5.29445 | opp_overlap 329614 329599 329594 CTGGAAGAATAAAAA TGAAATCC ATTG GAATTTCA TTTTTATTTTTCCGG Cphy_0264 329775 - 331298 + | bifunctional GMP synthase/glutamine amidotransferase protein TERM 390 331391 - 331437 + F 100 -18.4 -5.32944 | opp_overlap 331392 331394 331401 331404, overlap 331392 TATTTAACTTTATAG ACATCATAAATAAGGAACGAGA GTT TCTCCTTCCTTATTTATGATGC TTTTTTAATTGTGCA TERM 391 331436 - 331392 - f 100 -21.9 -2.9186 | opp_overlap 331391 331392, overlap 331394 331401 331404 ATTTAACTTTATAGA CATCATAAATAAGGAACGAGA GTT TCTCCTTCCTTATTTATGATG CTTTTTTAATTGTGC TERM 392 331392 - 331436 + F 100 -21.9 -3.78682 | opp_overlap 331392 331394 331401 331404, overlap 331391 ATTTAACTTTATAGA CATCATAAATAAGGAACGAGA GTT TCTCCTTCCTTATTTATGATG CTTTTTTAATTGTGC TERM 393 331434 - 331394 - f 100 -18.7 -3.00994 | opp_overlap 331392 331391, overlap 331392 331401 331404 TTAACTTTATAGACA TCATAAATAAGGAACGAGA GTT TCTCCTTCCTTATTTATGA TGCTTTTTTAATTGT TERM 394 331427 - 331401 - f 93 -11 -4.05389 | opp_overlap 331392 331391, overlap 331394 331392 331404 TATAGACATCATAAA TAAGGAACGAGA GTT TCTCCTTCCTTA TTTATGATGCTTTTT TERM 395 331424 - 331404 - f 79 -8.3 -4.13973 | opp_overlap 331392 331391, overlap 331401 331394 331392 AGACATCATAAATAA GGAACGAGA GTT TCTCCTTCC TTATTTATGATGCTT TERM 396 332232 - 332256 + F 74 -9.3 -3.00525 | overlap 332227 TGGGCGGATATGTGG GCTGGGGGATT TCA AATCCCCTAAC TGTCATTTGAGCAGA Cphy_0265 332463 - 332927 + | hypothetical protein Cphy_0266 332911 - 333495 + | hypothetical protein Cphy_0267 333780 - 335354 + | putative modification methyltransferase TERM 397 336625 - 336614 - g 77 -3 -5.46629 | AAGAGGGGAAAAAAA CATT ATCA AATG TTAGAAAATCAGTAA Cphy_0268 335347 - 337563 + | histidine kinase Cphy_0269 337553 - 338248 + | hypothetical protein TERM 398 338991 - 338980 - g 77 -3 -5.44837 | AAAAAAATAGAAAAA TATC AGAT GATA GCTTCTTAAATATGA Cphy_0270 338241 - 339011 + | hypothetical protein Cphy_0271 339345 - 339923 + | hypothetical protein Cphy_0272 340147 - 340566 + | hypothetical protein TERM 399 340760 - 340785 + F 100 -8.3 -5.4756 | ATAGTGTATGTACGG GCAGGAATCAA ACTT TGGGTTCCTGC TTTTTTCTTGGAATT Cphy_0273 341024 - 341944 + | filamentation induced by cAMP protein Fic TERM 400 342075 - 342063 - g 78 -7.7 -4.30635 | overlap 342057 AACAAAAACGAGAAA GTCCT CAC AGGAC AACCCACGGAGAATC Cphy_0274 342030 - 343130 + | S-adenosyl-methyltransferase MraW TERM 401 343468 - 343494 + G 77 -10.2 -3.14944 | opp_overlap 343463 343469 343470, overlap 343483 TGTTAGAGAACACCA ATGTGGACTCAA TTG TTGAGTCCACGA TTCAATATGCTGATA TERM 402 343493 - 343469 - g 85 -11.5 -3.44443 | opp_overlap 343468 343483, overlap 343463 343470 GTTAGAGAACACCAA TGTGGACTCAA TTG TTGAGTCCACG ATTCAATATGCTGAT TERM 403 343492 - 343470 - g 95 -15 -2.66183 | opp_overlap 343468 343483, overlap 343469 343463 TTAGAGAACACCAAT GTGGACTCAA TTG TTGAGTCCAC GATTCAATATGCTGA TERM 404 343976 - 343992 + G 86 -9.5 -4.23156 | overlap 343973 AGGGGAACCTATTAT GGATATC TGG GATATCC TTGTTTATTCCCTAT Cphy_0275 343239 - 344069 + | XRE family transcriptional regulator TERM 405 344346 - 344394 + T 100 -17.1 -2.58892 | gap 1, opp_overlap 344348 344353, overlap 344349 344353 CGTGTCGCAGTATAG TAGGAAACCTCGGAGATGCCAT ATTACA ATGGT-TCTCCGAGGTTTCTTA TACCTTAATATCCAT TERM 406 344392 - 344348 - T 82 -10.9 -2.66316 | gap 1, opp_overlap 344346 344349 344353, overlap 344353 TGTCGCAGTATAGTA GGAAACCTCGGAGATGCCAT ATTACA ATGGT-TCTCCGAGGTTTCT TATACCTTAATATCC TERM 407 344349 - 344391 + T 100 -16.6 -3.4439 | gap 1, opp_overlap 344348 344353, overlap 344346 344353 GTCGCAGTATAGTAG GAAACCTCGGAGATGCCAT ATTACA ATGGT-TCTCCGAGGTTTC TTATACCTTAATATC TERM 408 344387 - 344353 - T 83 -9.4 -3.82665 | gap 1, opp_overlap 344349 344346 344353, overlap 344348 CAGTATAGTAGGAAA CCTCGGAGATGCCAT ATTACA ATGGT-TCTCCGAGG TTTCTTATACCTTAA TERM 409 344353 - 344387 + T 100 -11.6 -4.35604 | gap 1, opp_overlap 344353 344348, overlap 344349 344346 CAGTATAGTAGGAAA CCTCGGAGATGCCAT ATTACA ATGGT-TCTCCGAGG TTTCTTATACCTTAA Cphy_0276 345398 - 344532 - | MerR family transcriptional regulator Cphy_0277 345854 - 346531 + | hypothetical protein Cphy_0278 346628 - 347287 + | hypothetical protein TERM 410 347486 - 347430 - T 100 -16.4 -4.83269 | gap 1, opp_overlap 347430 347434, overlap 347434 347447 ATATTATACCAAAAA GAAAGCTTACCAAAAAAGATATGA-TG ATTA CAGTCACATCTTTTTTGATGAGCTTTC TTTGCGTATCAGCTT TERM 411 347430 - 347486 + T 100 -14.2 -3.71645 | gap 1, opp_overlap 347430 347434 347447, overlap 347434 ATATTATACCAAAAA GAAAGCTTACCAAAAAAGATATGA-TG ATTA CAGTCACATCTTTTTTGATGAGCTTTC TTTGCGTATCAGCTT TERM 412 347482 - 347434 - T 100 -11.4 -4.94262 | gap 1, opp_overlap 347430 347434, overlap 347430 347447 TATACCAAAAAGAAA GCTTACCAAAAAAGATATGA-TG ATTA CAGTCACATCTTTTTTGATGAGC TTTCTTTGCGTATCA TERM 413 347434 - 347482 + T 89 -9.2 -4.48299 | gap 1, opp_overlap 347434 347430 347447, overlap 347430 TATACCAAAAAGAAA GCTTACCAAAAAAGATATGA-TG ATTA CAGTCACATCTTTTTTGATGAGC TTTCTTTGCGTATCA Cphy_0279 348416 - 347574 - | hypothetical protein TERM 414 348149 - 348171 + g 81 -8.6 -4.17987 | opp_overlap 348148 348149 CATAATCTTCAAAAT TTTCTATGAT ACT ATCATAGAGA TTCTTTGCTTCTTTC Cphy_0280 349025 - 348483 - | hypothetical protein TERM 415 349126 - 349154 + H 81 -4 -5.60993 | gap 1 TGATATAGGTAGAAA GAGAGGTAG-AAT AAAA GTTGCTATCTCTC TTTTTTTATAAAAAA TERM 416 349782 - 349795 + G 79 -8.1 -4.10657 | GAATGTTCCGCGATG GCAGC AGTA GCTGC TTTTAGAGAATGTGA Cphy_0281 349185 - 349946 + | purine phosphorylase family 1 Cphy_0282 350094 - 351305 + | hypothetical protein TERM 417 352313 - 352303 - g 81 -5.4 -5.10497 | AATTCATGGAAAAAA GCAT GTG ATGC GATTGTATATTATGG TERM 418 352360 - 352370 + G 70 -5.4 -4.39166 | ATGTTTAAGGGCGCT GCAA AAG TTGC TTTTAGTATCTGGGG Cphy_0283 351565 - 352659 + | hypothetical protein TERM 419 352739 - 352767 + T 100 -15.5 -4.11664 | opp_overlap 352739 CAATGGATATAAAAA TAGAGCTGTTACG CTA TGTAACAGCTCTA TTTGCTTATTCTACA TERM 420 352767 - 352739 - T 100 -14.8 -5.00642 | opp_overlap 352739 CAATGGATATAAAAA TAGAGCTGTTAC GCTAT GTAACAGCTCTA TTTGCTTATTCTACA Cphy_0284 353978 - 352773 - | peptidylprolyl isomerase FKBP-type TERM 421 354623 - 354609 - g 88 -5.7 -5.67967 | ATTATCAGAAAAAAA TGCAC TAAAG GTGCA AGGGATATTTGATGA Cphy_0285 354430 - 356565 + | methyl-accepting chemotaxis sensory transducer TERM 422 356675 - 356643 - f 100 -15.8 -4.08111 | gap 1, opp_overlap 356643 TAAACACATCATAAA GGCAGGAATAAACGG ATTA CCGTTT-TTCCTGCC TTTTTCTGATGATGG TERM 423 356643 - 356675 + F 100 -15.8 -4.93296 | gap 1, opp_overlap 356643 TAAACACATCATAAA GGCAGGAATAAACGG ATTA CCGTTT-TTCCTGCC TTTTTCTGATGATGG Cphy_0286 356849 - 357376 + | methylated-DNA--protein-cysteine methyltransferase Cphy_0287 357478 - 358032 + | GCN5-related N-acetyltransferase TERM 424 358212 - 358261 + T 93 -6.6 -5.51353 | gap 1, opp_overlap 358212 TCACGACAAAAAAAA TCCTAGAAATGCAGCAATGGCGG AAGGC TTGCCATAACTGT-TTTCTAGGA TTTTTATTCTTTTTC TERM 425 358261 - 358212 - T 95 -5.2 -5.9873 | gap 1, opp_overlap 358212 TCACGACAAAAAAAA TCCTAGAAATGCAGCAATGGC GGAAGGCTT GCCATAACTGT-TTTCTAGGA TTTTTATTCTTTTTC Cphy_0288 359431 - 358277 - | glycosy hydrolase family protein Cphy_0289 360273 - 359443 - | binding-protein-dependent transport systems inner membrane component TERM 426 360244 - 360257 + g 73 -2.3 -5.27335 | opp_overlap 360243 360244, overlap 360245 AACATATATAAATAG TTGCG ATTT CGCAC TTTTTCTTTCAACCA Cphy_0290 361181 - 360288 - | binding-protein-dependent transport systems inner membrane component TERM 427 361224 - 361202 - R 100 -12 -5.00616 | opp_overlap 361202 361193 TGCTCCTTTAAAAAA TGCGGCGAAA CAA TATCGCCGCA TTTACAATATTATTG TERM 428 361202 - 361224 + r 95 -12 -3.69332 | opp_overlap 361202, overlap 361193 TGCTCCTTTAAAAAA TGCGGCGAAA CAA TATCGCCGCA TTTACAATATTATTG Cphy_0291 362583 - 361234 - | extracellular solute-binding protein TERM 429 362711 - 362686 - H 72 -4.9 -4.85195 | opp_overlap 362686 362710 AAAACAATTGAAAAA TAATACAATTT ATAT AAATTGAATTA TTTTAATAAAATATT TERM 430 362710 - 362724 + H 73 -4.4 -5.09685 | opp_overlap 362686 362712, overlap 362686 362718 TTATATAAATTGAAT TATTTT AAT AAAATA TTTTTATATATATTA Cphy_0292 362867 - 364387 + | signal transduction histidine kinase, LytS Cphy_0293 364406 - 366004 + | two component AraC family transcriptional regulator TERM 431 366026 - 366048 + F 100 -12.1 -4.05027 | opp_overlap 366020 AGTATATGAGTTATA GGGTGCTAA TAATT TTAGCACCC TTATTATTAGTTGTA Cphy_0294 366262 - 366486 + | hypothetical protein TERM 432 366525 - 366570 + T 100 -9.1 -5.87688 | opp_overlap 366525 AAGTAAGGGAAAAAA GACCTCTCAAATCCGAGCTTT GTAT AAAACTAGGATTAGAAAGGTC TTTTTTTTAACTTGT TERM 433 366570 - 366525 - T 100 -13.5 -5.1848 | opp_overlap 366525 AAGTAAGGGAAAAAA GACCTCTCAAATCCGAGCTTT GTAT AAAACTAGGATTAGAAAGGTC TTTTTTTTAACTTGT Cphy_0295 369103 - 366857 - | DNA topoisomerase (ATP-hydrolyzing) TERM 434 366901 - 366922 + g 73 -5.9 -4.49337 | CACGCTTTCTATTAC GGACTTTCT TAGC AGAGAGTTC TTTTCCTTGATATTC TERM 435 367963 - 367975 + g 76 -6.3 -4.65182 | opp_overlap 367963 GGATTAAACCATCAA CGATT TCT AATCG TTTATTTGCTTTATC TERM 436 368119 - 368130 + g 80 -2.2 -5.60993 | opp_overlap 368129, overlap 368129 TTACTCCATACGTGT CTTC CATA GAGG TTTTTTTATAAAGAC Cphy_0296 371276 - 369348 - | DNA topoisomerase (ATP-hydrolyzing) TERM 437 370202 - 370185 - G 70 -2.7 -5.14965 | opp_overlap 370166 ATTTTTATCAAAAAA TCTGG TTACTTCC CCAGA AAAAACATCTTCGAC TERM 438 371396 - 371381 - H 71 -7.6 -3.45885 | opp_overlap 371378, overlap 371379 ATAACGAAAAAATGA GATGTG TAAA CACATC CGTATCCTAGTATTA TERM 439 371826 - 371802 - H 82 -10.2 -3.24925 | opp_overlap 371808 ATTGTATAGGAGTAA TACGAATTTC TTGCG GAAATTCGTA GTCGATAACTTAGAA TERM 440 374402 - 374380 - g 91 -11.4 -3.65199 | opp_overlap 374379 374376 374380 AATGTTTGATGTAAA CTATACGATC AAA GACCGTATAG CTTGTCTTAAGTCCT TERM 441 374380 - 374402 + G 73 -9.2 -2.81339 | opp_overlap 374380, overlap 374379 374376 AATGTTTGATGTAAA CTATACGATC AAA GACCGTATAG CTTGTCTTAAGTCCT Cphy_0297 371897 - 374809 + | CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase Cphy_0298 374809 - 375912 + | hypothetical protein TERM 442 376145 - 376109 - g 91 -11.7 -3.70039 | opp_overlap 376105 376114 376115 376117, overlap 376105 AAATCCGAAAATTAA GAGAGAGAGACAAGC GGGTAAA GCTTGTCTCCTTCTC GCGTAATTTTGGTAA TERM 443 376115 - 376139 + G 74 -10.1 -2.60956 | opp_overlap 376109 376105, overlap 376114 376105 376117 GAAAATTAAGAGAGA GAGACAAGC GGGTAAA GCTTGTCTC CTTCTCGCGTAATTT Cphy_0299 375937 - 376965 + | glycosyl transferase family protein TERM 444 377044 - 377024 - g 100 -6.9 -5.52347 | opp_overlap 377023 AATAAAATGAAAAAA GTAATTACC TAC GGTACTTAC GATTTATTACATGTT Cphy_0300 377015 - 377401 + | glycerol-3-phosphate cytidylyltransferase Cphy_0301 377579 - 378751 + | CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase TERM 445 378844 - 378802 - f 87 -8.7 -4.19336 | gap 1, opp_overlap 378802 378804 378808, overlap 378804 378808 AATGATTTTAATAAA TAGAAAGAAGGGAGCTGT TGTTATTG ACAG-TCCCTTCTTTCTG TTTATCAAGTATGGA TERM 446 378802 - 378844 + F 100 -12.3 -3.91144 | gap 1, opp_overlap 378802 378804 378808, overlap 378804 378808 AATGATTTTAATAAA TAGAAAGAAGGGAGCTGTTG TTAT TGACAG-TCCCTTCTTTCTG TTTATCAAGTATGGA TERM 447 378804 - 378842 + F 100 -12.7 -3.54447 | gap 1, opp_overlap 378802 378804 378808, overlap 378802 378808 TGATTTTAATAAATA GAAAGAAGGGAGCTGTTG TTAT TGACAG-TCCCTTCTTTC TGTTTATCAAGTATG TERM 448 378842 - 378804 - f 93 -11.3 -3.69068 | gap 1, opp_overlap 378804 378802 378808, overlap 378802 378808 TGATTTTAATAAATA GAAAGAAGGGAGCTGT TGTTATTG ACAG-TCCCTTCTTTC TGTTTATCAAGTATG TERM 449 378808 - 378838 + F 82 -7.7 -4.40003 | gap 1, opp_overlap 378804 378802 378808, overlap 378804 378802 TTTAATAAATAGAAA GAAGGGAGCTGTTG TTAT TGACAG-TCCCTTC TTTCTGTTTATCAAG TERM 450 378838 - 378808 - f 74 -6.3 -4.46072 | gap 1, opp_overlap 378808 378804 378802, overlap 378804 378802 TTTAATAAATAGAAA GAAGGGAGCTGT TGTTATTG ACAG-TCCCTTC TTTCTGTTTATCAAG Cphy_0302 379217 - 380476 + | Orn/DAP/Arg decarboxylase 2 TERM 451 380597 - 380646 + F 100 -14.8 -4.88407 | opp_overlap 380606 GAAAGGTATTATTAG TGGTTATAAGATTTTTGTTG GACTTAATGA CAACAAAAATCTTGTAACCA TTTTTAGTTCAATAA TERM 452 380847 - 380812 - f 70 -4.2 -5.00611 | CATAAACAAAAGAAA TTAGGAAAAATAAAAA AAAT TATTTAATCTTCCTAA TATAAAATAAAAAGG Cphy_0303 381033 - 381305 + | anti-sigma-28 factor, FlgM Cphy_0304 381357 - 381872 + | hypothetical protein TERM 453 382891 - 382878 - g 80 -6.7 -4.75472 | overlap 382887 GCGAGAGGAACAAAA GTAGC AAAA GCTAC GGATATTCCGATCGC TERM 454 383028 - 383011 - g 74 -4.9 -4.88495 | opp_overlap 383011, overlap 383006 AGACATACAACAAAA CAATAGA ACCA TCCATTG TTATGTCAACTCAGG Cphy_0305 381918 - 383780 + | flagellar hook-associated protein FlgK TERM 455 384017 - 384007 - g 73 -6.8 -4.20868 | opp_overlap 384007 GTGGCAAAACAACAA GCTG GAA CAGC TCTTCGAGTAAATAG Cphy_0306 383872 - 385713 + | flagellar hook-associated protein FlgK TERM 456 385755 - 385730 - f 78 -9.1 -3.55378 | opp_overlap 385734, overlap 385728 385734 385753 ACGGAGTTAGAAACA CAAATTTGTGC TGTT GCCCAAATTTG CAGGATTGCAACAGA Cphy_0307 385771 - 387315 + | flagellar hook-associated protein 3 Cphy_0308 387427 - 387897 + | hypothetical protein Cphy_0309 387891 - 388109 + | carbon storage regulator, CsrA TERM 457 388242 - 388280 + F 85 -8.2 -4.63218 | gap 1, overlap 388243 TCCTTAATATATGGG AGGGGCTTTGAC-GGTA AGGTAG TACCAGTCATAGCCCCG TTTTGTTACAAAAAG TERM 458 388243 - 388279 + F 91 -11.7 -3.3761 | gap 1, overlap 388242 CCTTAATATATGGGA GGGGCTTTGAC-GGTA AGGTAG TACCAGTCATAGCCCC GTTTTGTTACAAAAA Cphy_0310 388399 - 388887 + | hypothetical protein Cphy_0311 389103 - 389477 + | flagellar protein FlaG protein TERM 459 389564 - 389549 - g 82 -7.6 -4.46926 | GATTCTATTATAAAA GAGCTT ATGA AAGCTC AAGGCTTAAAGAAAA Cphy_0312 389492 - 391567 + | flagellar hook-associated 2 domain-containing protein Cphy_0313 391596 - 391976 + | flagellar protein FliS TERM 460 391980 - 392034 + F 73 -7.5 -3.71848 | gap 2, opp_overlap 391978 391980 391981 391983, overlap 391987 TATGTTCAGTAAATA TCATGGAGCCGTTGTGATAAAGAGG TTTTACT TCTCCTTATCACAACGGCT--ATGG TTATTCATGACAAGG TERM 461 392033 - 391981 - f 80 -10.3 -2.66873 | gap 2, opp_overlap 391980 391987, overlap 391980 391978 391983 ATGTTCAGTAAATAT CATGGAGCCGTTGTGATAAAGAG GTTTTACTT CTCCTTATCACAACGGCT--ATG GTTATTCATGACAAG TERM 462 391987 - 392029 + F 100 -15.8 -3.03203 | opp_overlap 391981 391983 391980 391978, overlap 391980 AGTAAATATCATGGA GCCGTTGTGATAAAGAGG TTTTACT TCTCCTTATCACAACGGC TATGGTTATTCATGA Cphy_0314 392121 - 392591 + | hypothetical protein Cphy_0315 392760 - 393596 + | flagellin domain-containing protein TERM 463 393669 - 393637 - f 93 -9.3 -4.86621 | opp_overlap 393639, overlap 393639 ACTTTTAATTAAAAA GAGGCTTATGTATTC ATT GAATACATAAGTCTT TTTGTAAAATATGAT TERM 464 393667 - 393639 - f 100 -11.9 -4.05402 | opp_overlap 393639, overlap 393637 TTTTAATTAAAAAGA GGCTTATGTATTC ATT GAATACATAAGTC TTTTTGTAAAATATG TERM 465 393639 - 393667 + F 100 -14.1 -4.8667 | opp_overlap 393639 393637 TTTTAATTAAAAAGA GGCTTATGTATTC ATT GAATACATAAGTC TTTTTGTAAAATATG TERM 466 394805 - 394792 - g 70 -5.3 -4.35992 | overlap 394789 GATAATAATAAAGAA TTGTC AATA GACAA TCAAAGCCTTATTAT Cphy_0316 393775 - 394935 + | FliB family protein TERM 467 396606 - 396595 - g 74 -4.4 -4.90471 | opp_overlap 396595, overlap 396590 ATCGAAAACACAAAA GCAA ATGA TTGC TTCTAAGGCTATAGC Cphy_0317 395189 - 396976 + | hypothetical protein TERM 468 397168 - 397190 + G 74 -9.8 -2.64107 | opp_overlap 397161 GGAACGGATTATCAT TCCCATCTCG GAA CGAGAAGGGG TGGTATGGCAGTTTA Cphy_0318 397096 - 398499 + | amidophosphoribosyltransferase Cphy_0319 398539 - 399117 + | glycerol-3-phosphate responsive antiterminator, GlpP TERM 469 399472 - 399519 + F 100 -9.5 -5.68023 | gap 2 ATTGCATGAGAATTG GAGTCAAGCAAATAGTATGCTGC CTAG GCAGTGTA-T-TTTGCTTGGCTC TTTTTTTGATTATGA TERM 470 399901 - 399917 + G 91 -9.5 -4.38322 | AAGCAATTAGATTTT CCATTTC AGA GAAATGG TTCTTTTGTACTTGG Cphy_0320 399661 - 401118 + | FAD dependent oxidoreductase Cphy_0321 401119 - 402381 + | FAD-dependent pyridine nucleotide-disulphide oxidoreductase Cphy_0322 402394 - 402762 + | hypothetical protein Cphy_0323 402853 - 403878 + | glycosyl transferase family protein TERM 471 404245 - 404235 - g 73 -3.2 -5.10933 | TTATGGAAAAGAAAA GAGA AAT CCTC TTGTTATTATCCGGG Cphy_0324 404066 - 404515 + | peptidase A8 signal peptidase II TERM 472 404561 - 404595 + T 77 -3.8 -5.51402 | gap 1, opp_overlap 404561 AACTGAAAAATAGAA GCATAAGAAAGTG TCAAATTTCC CACTT-CTTATGC TTTTTTTACCTCTAT Cphy_0325 406298 - 404694 - | CTP synthetase TERM 473 407148 - 407128 - g 74 -4.8 -4.82667 | overlap 407129 TGATTATAGTAAAAA CCAGTATA CGATT TATACTGA ACTAGCTAAAAATAA TERM 474 407630 - 407640 + G 73 -5.4 -4.6759 | overlap 407592 407586 CCGTTTTTCTCTCTA TCAG GTT CTGA TTTTGTTGAAATGTT TERM 475 407905 - 407917 + G 72 -7.7 -3.73072 | AGATAAGGCACTTCT TCGTC CAG GACGA TTTGATCGAAGAGTT Cphy_0326 406898 - 408943 + | ATP-dependent metalloprotease FtsH TERM 476 408992 - 408950 - f 90 -11.6 -3.39327 | gap 1, opp_overlap 408956, overlap 408956 GTGTTATAGTGACAA GGATAAGAGTTACTACGGA TGAATG TCCCTAGTAACTCTT-TCC GATTAAAGAAGATAT TERM 477 408987 - 408956 - f 87 -10.3 -3.57039 | opp_overlap 408956, overlap 408950 TAGTGACAAGGATAA GAGTTACTACGGA TGAATG TCCCTAGTAACTC TTTCCGATTAAAGAA TERM 478 408956 - 408987 + F 89 -11 -3.66178 | opp_overlap 408950 408956 TAGTGACAAGGATAA GAGTTACTACGGAT GAAT GTCCCTAGTAACTC TTTCCGATTAAAGAA TERM 479 409203 - 409192 - g 76 -4.4 -5.2166 | GAAGAACTGAAAAAA CTTC CCGC GAAG CCAGGTGTCTACATA TERM 480 410375 - 410396 + G 78 -9.5 -3.58802 | opp_overlap 410356 410375 TCGATATCTCTAATA CCAACGGAT TCGA ATCTGTTGG TTCTATGGTAGTTTA Cphy_0327 409162 - 411048 + | excinuclease ABC, C subunit Cphy_0328 411257 - 412186 + | HPr kinase Cphy_0329 412380 - 413318 + | ROK family glucokinase TERM 481 413466 - 413439 - f 89 -8.6 -4.58085 | ACAGTTAGAAAGAAA GGTTTGTTCTAC TATC ATAAAACAAACC AGAGGATATAAGTGA TERM 482 414096 - 414078 - g 70 -3.1 -4.91109 | TTTTTATTACAAAAA GGAAATC AAGAA GATATCC TTAGAAAAATTGAGG Cphy_0330 413478 - 414410 + | UDP-N-acetylenolpyruvoylglucosamine reductase Cphy_0331 414428 - 415309 + | hypothetical protein Cphy_0332 415316 - 416257 + | hypothetical protein Cphy_0333 416274 - 416531 + | phosphotransferase system, phosphocarrier protein HPr TERM 483 416569 - 416580 + F 78 -5.8 -4.77719 | ATCAGGGTAATTCTG GAGC AAAA GCTC TTTTCTTAACTTTTG TERM 484 416747 - 416763 + F 74 -9.5 -2.75064 | opp_overlap 416737 416747 416750, overlap 416750 ATAAGCTAGACTCAA GAAGTTC TAG GAACTTC TCATTAGATAAGCGG TERM 485 416763 - 416747 - f 76 -9.5 -3.1479 | opp_overlap 416747 416750, overlap 416737 416750 ATAAGCTAGACTCAA GAAGTTC TAG GAACTTC TCATTAGATAAGCGG Cphy_0334 416855 - 418246 + | hypothetical protein TERM 486 418368 - 418350 - f 73 -4.6 -5.05782 | ACTTAGCTGAAAAAA TCTATTAC TTA GTAAAAGA TAAATCGTTTATACA TERM 487 418772 - 418786 + G 71 -4.2 -4.77165 | overlap 418774 AAAATTGTATCAAGG GGCTTC ACA GAAGGC TTTTATTATAAACCA TERM 488 419198 - 419186 - g 74 -7.7 -3.84712 | CAATTTTACATGAAA TCTCC AGA GGAGA TGAGAGAGTTATTTC Cphy_0335 418448 - 422008 + | DNA polymerase III DnaE TERM 489 422326 - 422304 - f 73 -7.9 -3.76402 | ATGGTAGTTATCAAA TCCTAATAT CCATT ATATTAGGA CTAGCCATGAAAGCG TERM 490 423145 - 423131 - g 75 -8.6 -3.47617 | overlap 423135 ATTGTAAATGCAGAA GGAATC GGC GATTCC TATGGAATGGCGAAA Cphy_0336 422399 - 423424 + | 6-phosphofructokinase Cphy_0337 423685 - 425433 + | ABC transporter related TERM 491 426270 - 426256 - g 75 -8.6 -3.62597 | overlap 426266 CTTACCTTTGAAGAA GGAAGT ATA ACTTCC GCCGCAAAGGATGCA Cphy_0338 425701 - 427869 + | RNA-binding S1 domain-containing protein TERM 492 427896 - 427942 + F 77 -3.1 -5.54907 | opp_overlap 427888 427896 427891 ATTATAATAGTAAAA TACCAGATGTCTTGAATGTAT CCGTT AAGAATTCAAGTAATCTGGTA TTTTTATTTTGTCCA TERM 493 428369 - 428380 + G 84 -4.4 -5.54264 | opp_overlap 428369 AGAGATAGAATATGA GGAA AAGA TTCC TTTTTTTAAATATTT Cphy_0339 428277 - 429278 + | binding-protein-dependent transport systems inner membrane component Cphy_0340 429392 - 430300 + | binding-protein-dependent transport systems inner membrane component Cphy_0341 430405 - 432018 + | extracellular solute-binding protein TERM 494 432724 - 432735 + G 81 -3 -5.62288 | AACCTACTTAAGGAT CTAT ATCA ATAG TTTTTATTTTATTAA Cphy_0342 432371 - 434707 + | AraC family transcriptional regulator TERM 495 436169 - 436187 + G 74 -3 -5.37043 | TGAGAAGAATAGAGC CGGCAAAC CGT GTTGACCG TTTTTTATCTGGGGT Cphy_0343 434803 - 437214 + | FG-GAP repeat-containing protein TERM 496 437677 - 437700 + F 100 -15.4 -5.21709 | ACGTGAGTTTAAGCC GCCCTGATAG TAAA CTATCAGGGC TTTTTTAATCTCCGA Cphy_0344 437841 - 438587 + | membrane protein-like protein TERM 497 438572 - 438562 - f 71 -5.4 -4.6008 | AAAATATAAGTAAAA TCCT AAA AGGA GATTACAAAGATTAG TERM 498 438672 - 438656 - f 71 -8.1 -3.31322 | TGTAATCTGCTATAA TTGCATT ATA AATGCAA GGAAGAGGGTGTCTT Cphy_0345 438772 - 439278 + | hypothetical protein Cphy_0346 439293 - 439724 + | hypothetical protein TERM 499 439764 - 439745 - f 79 -8 -4.0847 | opp_overlap 439744 439756 439758 GATATACAACAAGAA GTGTAAAA AGTT TTTTACAC ATTGAATTGCTTTGC TERM 500 439786 - 439766 - f 73 -9.1 -2.8806 | opp_overlap 439758 439756, overlap 439771 AAAGTTTTTTACACA TTGAATTGC TTT GCAACTCAA TGAGCAGATATTGTA TERM 501 439806 - 439790 - f 74 -9.5 -2.78712 | opp_overlap 439758 439756, overlap 439787 TTTGCAACTCAATGA GCAGATA TTG TATCTGC GCCTAAAGATTGTAG Cphy_0347 439847 - 440572 + | peptidase M22 glycoprotease Cphy_0348 440559 - 440993 + | ribosomal-protein-alanine acetyltransferase TERM 502 441042 - 441060 + F 76 -5.3 -4.95957 | overlap 441044 GGATGAAGGAGTATT TACAGTG ATTTC CACTGTG TTTTTCCTTGGTTTC Cphy_0349 441107 - 441349 + | hypothetical protein TERM 503 441334 - 441371 + F 89 -12.1 -3.37303 | opp_overlap 441334, overlap 441336 441341 TGAAGTTTTTGATAA GTCGGAAGCCTTGTGAT GTAT GTCACAAGGCTTTTGTC TTGAATTATTTCTTG TERM 504 441336 - 441369 + F 100 -13.3 -3.23541 | opp_overlap 441334, overlap 441334 441341 AAGTTTTTGATAAGT CGGAAGCCTTGTGAT GTAT GTCACAAGGCTTTTG TCTTGAATTATTTCT TERM 505 441341 - 441364 + F 100 -11.8 -4.7033 | opp_overlap 441334, overlap 441336 441334 TTTGATAAGTCGGAA GCCTTGTGAT GTAT GTCACAAGGC TTTTGTCTTGAATTA Cphy_0350 441620 - 442534 + | ribonuclease Z TERM 506 442578 - 442544 - f 100 -10.2 -4.84262 | opp_overlap 442536 442544 442555 GAATAATTAAGAAAA GCAATAGAGAGGTTTT ATA AAAAACTTTCTATTGC TTTCAGATTATTATT TERM 507 442544 - 442578 + F 95 -12.4 -3.73725 | opp_overlap 442544, overlap 442536 442555 GAATAATTAAGAAAA GCAATAGAGAGGTTTT ATA AAAAACTTTCTATTGC TTTCAGATTATTATT Cphy_0351 442647 - 443312 + | hypothetical protein TERM 508 443348 - 443384 + F 71 -8.1 -3.2375 | opp_overlap 443348 443346 ATAGATTATGAAAGA GCTGTCATTAAGGAT AAATTGA GTCCTTTGTGACAGC TTAGCTTATACGATA Cphy_0352 443491 - 444552 + | glycoprotease family metalloendopeptidase Cphy_0353 444624 - 445325 + | 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase TERM 509 445798 - 445770 - f 79 -4.8 -5.1523 | overlap 445795 GTTATAATACAAAAA CAAATTGTTT GAAAAGAAT AAACAATTTG AAAAACTTCAAAAAC TERM 510 445970 - 445957 - f 75 -2.4 -5.55664 | overlap 445961 TGATTACGAAAAAAA GTCA GTATTG TGAC AATAGTCACAAAACA TERM 511 445984 - 445961 - f 70 -8.2 -3.00863 | overlap 445957 TACGAAAAAAAGTCA GTATTGTGAC AATA GTCACAAAAC AATAGAACATTGATA TERM 512 446211 - 446233 + F 87 -10.8 -3.5332 | overlap 446232 ACGTCAATTAGTATC GATTTTTAAC TTT GTTAAAAATC TTAATTTGAGAGTTT TERM 513 446852 - 446832 - f 80 -8.9 -3.64371 | opp_overlap 446832 446827, overlap 446833 AAGTCAGATGTGAAA GCCCAGGGC TCA ACCCTGGGA CTGCATTTGAAACTG TERM 514 446851 - 446833 - f 89 -12.4 -2.7814 | opp_overlap 446832 446827, overlap 446832 AGTCAGATGTGAAAG CCCAGGGC TCA ACCCTGGG ACTGCATTTGAAACT TERM 515 447855 - 447840 - f 81 -9 -3.80929 | AAATTAAATAGATAA CACCAG ATTT CTGGTG ACGATGCGCTTAGGG TERM 516 448608 - 448591 - f 93 -11.3 -3.63895 | opp_overlap 448590 448589 GGGAAGGAGCCTAAA CCGTGGA TTTA TCCACGG GGTTATGGACCGCAA TERM 517 448844 - 448833 - f 76 -7.2 -4.2354 | GAAAGGTGAAAAGAA CCCC GGGA GGGG AGTGAAAGAGAACCT TERM 518 449021 - 449007 - f 77 -8.6 -3.57615 | TGAATAGGGCGTAAA TCCATC TTT GATGGA TCAGTCAGTACGTGT TERM 519 451239 - 451250 + F 71 -3 -5.31456 | opp_overlap 451239 GGCTTAACCTAAAAG GTTT GTTT AAAC TTTTTTCTGAGTTGA TERM 520 451258 - 451279 + F 74 -6.7 -4.19678 | gap 1 GTTTAAACTTTTTTC TGA-GTTGAC AAT GTCAACATCA TTTATTACAATGTAG TERM 521 452237 - 452221 - f 70 -8.1 -2.99057 | opp_overlap 452221, overlap 452218 TTTCAAAGATAATCA GTATGAA AAT TTCATAC TATGTACGTGTAGCT TERM 522 452320 - 452344 + F 100 -9.4 -5.52347 | GTCACGTACATTAGT GCCTGTAAAT GCTGA GTTTACAGGC TTTTTTCATTTTATT TERM 523 452757 - 452777 + F 79 -3.3 -5.626 | CTTGTGTTATTTCGA TAGTCAACA ATT TATTGGCTA TTTTTTTCTGCCGTC Cphy_0354 452927 - 453502 + | hypothetical protein TERM 524 453631 - 453602 - T 89 -11.7 -3.03624 | opp_overlap 453606, overlap 453599 453604 453606 TTATTAAGTAAATTA GATAGACATTAAT TCAC ATCAATGTCTATC ATGAGTAAAAATTAT TERM 525 453629 - 453604 - T 72 -8.5 -3.068 | opp_overlap 453606, overlap 453602 453599 453606 ATTAAGTAAATTAGA TAGACATTAAT TCAC ATCAATGTCTA TCATGAGTAAAAATT TERM 526 453693 - 453682 - T 77 -4.4 -5.23016 | AAATAATTTAAAAAA TCTG ATAG CAGA GATTAATGAGTATTG Cphy_0355 454273 - 453674 - | protein of unknown function DUF340 membrane Cphy_0356 454560 - 454276 - | hypothetical protein TERM 527 454461 - 454475 + g 77 -2.8 -5.43514 | AAATAATTAAAATGG TGCATA CTA TTTGCA TTTTTTCATTCTTTT TERM 528 455090 - 455068 - H 100 -11.4 -4.2803 | opp_overlap 455068 TACTTGAATTTAAAA CCTGCAAACA GTA TGTTTACAGG TTTTTCATTATAATT TERM 529 455068 - 455090 + H 95 -9.2 -4.95876 | opp_overlap 455068 TACTTGAATTTAAAA CCTGCAAACA GTA TGTTTACAGG TTTTTCATTATAATT TERM 530 455334 - 455363 + H 100 -14.5 -5.0133 | opp_overlap 455334 455323 CTAAGTTGTAAGTAA GCCAATATCAGAG GTTT CTTTGATATTGGC TTTTTTAAAAACGTA TERM 531 455363 - 455334 - H 90 -12.3 -3.35867 | opp_overlap 455334, overlap 455323 CTAAGTTGTAAGTAA GCCAATATCAGAG GTTT CTTTGATATTGGC TTTTTTAAAAACGTA TERM 532 455959 - 455974 + G 81 -4.6 -5.33848 | TACCTTATTGGTTTC TCCAGC AAAT GCGGGA TTTTTTGCTTGTGCT Cphy_0357 455633 - 457405 + | hypothetical protein TERM 533 457646 - 457633 - f 74 -3.9 -5.27476 | CTGAATAAAACAAAA TAAAG TAAT CTTTA TCAATGGGAGTCTTA Cphy_0358 457661 - 458350 + | two component transcriptional regulator Cphy_0359 458494 - 459414 + | ABC transporter related Cphy_0360 459407 - 460231 + | hypothetical protein TERM 534 461050 - 461040 - g 78 -6.8 -4.71061 | AGTTACATGTAAAAA TGGC TAT GCCA ATGGAGAAGAAGTCG Cphy_0361 460345 - 461238 + | histidine kinase TERM 535 461529 - 461480 - T 100 -16.2 -5.27476 | gap 1, opp_overlap 461480 TTTAAGAAAACAAAA CAGGTACAAAGTGAT-TTCATAA AAAAA TTTTGAATATCACTTTGTACCTG TTTTCATGTTGATAT TERM 536 461480 - 461529 + T 100 -16.2 -4.45399 | gap 1, opp_overlap 461480 TTTAAGAAAACAAAA CAGGTACAAAGTGAT-TTCATAA AAAAA TTTTGAATATCACTTTGTACCTG TTTTCATGTTGATAT Cphy_0362 463122 - 461569 - | ABC transporter related TERM 537 463138 - 463151 + H 100 -9.5 -4.84359 | TCTGACCTCAATTCT GGCGC TTTA GCGCC TTTTTATAACAATAG Cphy_0363 463437 - 463946 + | hypothetical protein TERM 538 464019 - 463985 - T 95 -8.6 -5.16472 | opp_overlap 463989 463995, overlap 463975 463986 AAAAATTGCAAAAAA GCAAGGCAAAGTACGA ATC TCGGACTTTTCCTTGA TATGAAAAAATGGAG TERM 539 464018 - 463986 - T 95 -12.1 -3.67443 | opp_overlap 463989 463995, overlap 463975 463985 AAAATTGCAAAAAAG CAAGGCAAAGTACGA ATC TCGGACTTTTCCTTG ATATGAAAAAATGGA TERM 540 463989 - 464015 + T 71 -8 -3.25942 | opp_overlap 463986 463985, overlap 463995 ATTGCAAAAAAGCAA GGCAAAGTACGA ATC TCGGACTTTTCC TTGATATGAAAAAAT TERM 541 464074 - 464030 - T 100 -11 -5.21709 | gap 1, opp_overlap 464047 CTTGATATGAAAAAA TGGAGTATTGCAAATCAGCTA ATTT TAGCTT-TTTGCGATACTCCA TCTAAATATTGGATG Cphy_0364 464651 - 464091 - | GPR1/FUN34/yaaH family protein TERM 542 464623 - 464633 + g 81 -5.4 -5.10033 | overlap 464618 AGTGGAGCTGGATTG GCAA TCG TTGC TTTTGTTTCTGTTGA TERM 543 464912 - 464876 - H 93 -10.2 -4.20086 | opp_overlap 464882, overlap 464877 464882 AGAGATATATATAAA GTGAAACAGCCAGTAG GGGAG CTACCGGCTGTTTCGT TGAGGGGAGTATAAA TERM 544 464911 - 464877 - H 100 -13.7 -3.10967 | opp_overlap 464882, overlap 464876 464882 GAGATATATATAAAG TGAAACAGCCAGTAG GGGAG CTACCGGCTGTTTCG TTGAGGGGAGTATAA TERM 545 464906 - 464882 - H 100 -12.2 -3.92005 | opp_overlap 464882, overlap 464877 464876 ATATATAAAGTGAAA CAGCCAGTAG GGGAG CTACCGGCTG TTTCGTTGAGGGGAG TERM 546 464882 - 464906 + H 87 -10 -3.90112 | opp_overlap 464882 464877 464876 ATATATAAAGTGAAA CAGCCAGTAG GGGAG CTACCGGCTG TTTCGTTGAGGGGAG TERM 547 465395 - 465381 - H 70 -7.2 -3.63073 | opp_overlap 465372 TACAGGTTCTAATAA GAATTC TCA GAATTC CCAGAACGCACAAAA TERM 548 465518 - 465544 + H 83 -11.2 -2.88783 | opp_overlap 465517, overlap 465515 TTGTAGGACAGAGAG TTTCTTATAAAA AAT TTTTATAAGAAA TAATTGTAGTGTGTA TERM 549 465572 - 465626 + H 100 -16.8 -5.65177 | GTATTCTATTTATTT TGCCTAGGATGTAGTATTGTAAGA CGATAAA TCTTATTTTACTACATCCTAGGCA TTTTTTTGTCAGTAT Cphy_0365 465733 - 466035 + | rhodanese domain-containing protein TERM 550 466100 - 466137 + F 80 -7.1 -4.54449 | opp_overlap 466100 466101, overlap 466101 466110 GTGGTTTTTAGAAAA TCAACGAAAGCAGTGGA ATTC TCGACTGTTTTAGTTGG TTTTCTATGCGCTAT TERM 551 466101 - 466136 + F 71 -8.4 -3.31946 | opp_overlap 466101 466100, overlap 466100 466110 TGGTTTTTAGAAAAT CAACGAAAGCAGTGGA ATTC TCGACTGTTTTAGTTG GTTTTCTATGCGCTA TERM 552 466824 - 466840 + G 79 -10.9 -2.79209 | overlap 466820 GAAGCAGCCATGATT GGAGCTA GAA TAGCTCC TGGTCTTAATCGTTC Cphy_0366 466188 - 467330 + | putative RNA methylase Cphy_0367 468344 - 467424 - | alpha/beta hydrolase fold TERM 553 469613 - 469601 - g 75 -9.1 -3.484 | opp_overlap 469600 469599 TTTATTATACCAGAA CCACG GAT CGTGG ACTTACTCTAAATCA Cphy_0368 468619 - 470043 + | cell wall hydrolase/autolysin TERM 554 470070 - 470044 - f 100 -16.8 -3.61806 | opp_overlap 470040 470039 470052, overlap 470052 470055 ACAGTAATGAGATAA GTGTGAAAGAAC AAA GTTCTTTCACAC AGAAGTTTGTGCCTG TERM 555 470107 - 470072 - f 86 -11.3 -2.87463 | gap 1, opp_overlap 470040 470039, overlap 470055 470075 AAGTTCTTTCACACA GAAGTTTGTGCCTGCG TCGTC CTC-GGCACAAACTTC CGGCCTACTACTAAG TERM 556 470104 - 470075 - f 70 -7.2 -3.58726 | gap 1, overlap 470055 470072 TTCTTTCACACAGAA GTTTGTGCCTGCG TCGTC CTC-GGCACAAAC TTCCGGCCTACTACT TERM 557 470185 - 470147 - f 76 -9.7 -3.06261 | opp_overlap 470150, overlap 470150 TTTCAAGTGTGAAGA GAATTTCTAAGGCGCTA AAAAA CACCGCCTAAGAAATTC TAAAACTTCACACTG TERM 558 470225 - 470251 + F 82 -9.4 -3.65671 | opp_overlap 470225 470231, overlap 470231 TCTTTTTTATGACAA GGAAAAGTTCGC GAA GCGTACTTTCCC TTATATATGCTTGTG TERM 559 470251 - 470225 - f 90 -11.6 -3.40403 | opp_overlap 470225 470231, overlap 470231 TCTTTTTTATGACAA GGAAAAGTTCGC GAA GCGTACTTTCCC TTATATATGCTTGTG TERM 560 470799 - 470813 + G 70 -2.8 -5.18726 | CTGGTGAAAATGGAT TTGGTT ATG ATCCAA TTTTTGTTGTGCCAG Cphy_0369 470342 - 470923 + | RdgB/HAM1 family non-canonical purine NTP pyrophosphatase Cphy_0370 470940 - 471434 + | phosphodiesterase TERM 561 471865 - 471887 + F 86 -9.4 -3.98661 | ATCCCTTCTGGCACA TTTTTTCTTT CTA AAAGAAAAAA TTTGTGGTGGGTATA TERM 562 472341 - 472359 + F 73 -9 -2.90496 | overlap 472338 ATTAGTTTTTCTTTG TGTATTTC CTA GAAATACA TACTTTCCAAAAAAA TERM 563 472498 - 472511 + F 100 -8.1 -5.67063 | TATCGTAAATGGTAA GAGGC GAAA GCCTC TTTTTTTCTGCTCAG Cphy_0371 472717 - 473262 + | DJ-1 family protein Cphy_0372 473354 - 474736 + | hypothetical protein TERM 564 474762 - 474726 - T 71 -8.3 -3.27786 | opp_overlap 474739, overlap 474739 TTCAAAATGTACCAA TTACGAAATAAATTTAA CAT TTAATTTTCTTTCGTAA TAACCATAGTGCAAT Cphy_0373 476121 - 474739 - | amino acid carrier protein TERM 565 474880 - 474924 + g 71 -5.1 -4.57073 | gap 1, opp_overlap 474880 474912, overlap 474912 AAGTATATAAACAAG GCGGTAG-ATATCGATTCCT TTTTTC GGGAAGAGGTATTCTACCGC TTTTTCGCCGAAATA TERM 566 475672 - 475654 - G 71 -7.4 -3.83205 | ACCTCCCATACTAAA CGCCAC GAATAAG GTGGCG ATGCAGAAGATAACA Cphy_0374 476696 - 476917 + | small acid-soluble spore protein alpha/beta type TERM 567 476990 - 476939 - f 100 -23.4 -3.7519 | opp_overlap 476944, overlap 476944 GAATAAAAGGAAATA GAAAAGAGGTGTTGCAGAGTGGTA TTTT TACCACTTTGCAACACCTCTTTTT TTGTTATAAATAAGG TERM 568 476944 - 476985 + F 100 -25.5 -5.88565 | opp_overlap 476939 476944 AAAGGAAATAGAAAA GAGGTGTTGCAGAGTGGTA TTTT TACCACTTTGCAACACCTC TTTTTTTGTTATAAA TERM 569 476985 - 476944 - f 100 -23.3 -4.85894 | opp_overlap 476944, overlap 476939 AAAGGAAATAGAAAA GAGGTGTTGCAGAGTGGTA TTTT TACCACTTTGCAACACCTC TTTTTTTGTTATAAA TERM 570 477036 - 477020 - f 71 -2.3 -5.37593 | overlap 477022 GCTCAAACGAAAAAA CATTCAC ATT ATGAATA AAATATGATAGAATA Cphy_0375 477102 - 478448 + | phosphoglucosamine mutase TERM 571 478828 - 478845 + F 74 -7.1 -4.00589 | ACGTTAAAAAGTTTG GTATATG AAAG CATATAC TTTGCTATATTTTAA TERM 572 479029 - 479019 - g 78 -6.8 -4.54727 | TTCCGTAAAGGAAAA GCAC CAC GTGC AATCATCGAGAAGAT TERM 573 479558 - 479573 + G 80 -9 -3.9392 | opp_overlap 479555 TCATGCAGCAGATCT TGCTGG AAAG CCAGCA TTATTTAAAGTAAAA Cphy_0376 478875 - 480161 + | trigger factor Cphy_0377 480272 - 480853 + | ATP-dependent Clp protease, proteolytic subunit ClpP TERM 574 481190 - 481210 + G 77 -9.9 -3.17146 | overlap 481186 AGTTCTTTCTGTATC CGTTTATAA TCA TTATAAACG TGTATTATCAGAGAA Cphy_0378 480918 - 482219 + | ATP-dependent protease ATP-binding subunit TERM 575 482249 - 482284 + F 76 -6.1 -4.64676 | AGCTAACATGAAGAA GTCTGTCGGCGAACT CTTATC AGATAGCTGGCAGAC TTTTGTTAACAGTAA TERM 576 483260 - 483292 + G 82 -7.7 -4.51196 | opp_overlap 483259 483258 483256, overlap 483261 TTATGTTGAAACATT GCTTAGCCTACCTTG GGA CAAGGTAAGCGAAGA TTTTATGGATTTGGC TERM 577 483261 - 483291 + G 82 -11.2 -3.29995 | opp_overlap 483259 483258 483256, overlap 483260 TATGTTGAAACATTG CTTAGCCTACCTTG GGA CAAGGTAAGCGAAG ATTTTATGGATTTGG TERM 578 484660 - 484649 - g 76 -5.8 -4.54727 | overlap 484650 484651 CGGTCTAAAGGAAAA GCTG CTGG CAGC AAAGAATACCGGGAT Cphy_0379 482373 - 484802 + | ATP-dependent protease La Cphy_0380 485065 - 485670 + | GTP-binding protein HSR1-related TERM 579 485724 - 485737 + F 81 -4.5 -5.46657 | GAGTAATCAATCTAT GGAGC AAAA GTTCC TTTTTTATTAGAGTG TERM 580 485766 - 485797 + F 100 -11 -4.2028 | opp_overlap 485774 485776, overlap 485781 TGAAAAAACATGTCC GGATAGCATATCAC TGAA GTGATACGTTATCC TTCTTTCTATATATA TERM 581 487056 - 487079 + G 83 -6.1 -5.08731 | CTCAAAAAGCTTATT TAATGGCAA GAAGAA TTGCCGTTA TTTTCTTGTTTATTG Cphy_0381 486104 - 487459 + | MATE efflux family protein TERM 582 487516 - 487561 + F 82 -4.9 -5.47821 | gap 1, opp_overlap 487516, overlap 487519 TAAGTAGGCAATTTA TATTCTCCATAGGTAGACCA AAAGTAG TGGCTAACCTATGGAG-ATA TTTTTTTAAATCAGT TERM 583 487519 - 487559 + F 89 -9.1 -4.37763 | opp_overlap 487516, overlap 487516 GTAGGCAATTTATAT TCTCCATAGGTAGACCA AAAGTAG TGGCTAACCTATGGAGA TATTTTTTTAAATCA Cphy_0382 488237 - 489733 + | methyl-accepting chemotaxis sensory transducer TERM 584 489926 - 489877 - T 74 -9.1 -3.06651 | gap 1, opp_overlap 489886, overlap 489870 TAATATTATAAATTA TTTAAAAAAGAAGATT-AGTCC GTTATTG GGATTTAATCTTCTTTTTTAAA AGGTCTTGTTTAACA Cphy_0383 490506 - 489955 - | hypothetical protein TERM 585 490584 - 490608 + r 90 -9.4 -4.31895 | gap 1, opp_overlap 490580 490579 TCAATAACAACCCTA GGACCAG-TAC TTTT GTATCTGGTCC TTTGTTAATGTATCT Cphy_0384 491561 - 490581 - | hypothetical protein Cphy_0385 491883 - 494183 + | AraC family transcriptional regulator TERM 586 496727 - 496709 - g 74 -7.5 -3.93556 | opp_overlap 496708 496709 496712, overlap 496712 AGTCATGGAAGGAAA CAATGCA AGCGG TGCATTG ATTGATATAAAAAAT Cphy_0386 494649 - 497018 + | hypothetical protein Cphy_0387 497116 - 498111 + | hypothetical protein TERM 587 498188 - 498151 - T 74 -5.6 -4.7908 | opp_overlap 498151 AAAAAGATAAAGAAA GTGCCATCAGAGAA TAAAAATAAC TTCACTGGTGGCAC TTCTCCATAGGTGAA Cphy_0388 499144 - 498254 - | oxidoreductase domain-containing protein TERM 588 499062 - 499079 + g 72 -8.4 -3.57561 | opp_overlap 499059 499062 TCATAAAGATAATTA CCTGCC TCATCT GGCAGG TTTGCAAGCTTCGAG Cphy_0389 500217 - 499306 - | hypothetical protein TERM 589 499780 - 499792 + g 79 -3.4 -5.43514 | TTTTCTATGAGTGGG GGAA ACAGC TTCC TTTTTTGATTCTTTT TERM 590 500259 - 500271 + r 75 -4.9 -5.11063 | opp_overlap 500259 ACATATTAATAAAGT TGTTT CAA AAACA TTTTTCTTAAATAGT Cphy_0390 501620 - 500301 - | amidohydrolase TERM 591 500761 - 500789 + g 71 -8.9 -3.11564 | TTCACTTTAGTATTC GCTGCTTTTATGG CCT CAATGGAAGCAGC TCTTACGTAGCTTTC TERM 592 501707 - 501675 - R 100 -19.5 -3.01712 | opp_overlap 501678, overlap 501678 CTTTTCTGCTCAACA CAAGTTTATGATTGC GTT GCAATCATAAACTTG CTCAGTGAAAGATTT TERM 593 501678 - 501704 + r 100 -15.4 -3.18264 | opp_overlap 501675 501678 TTCTGCTCAACACAA GTTTATGATTGC GTT GCAATCATAAAC TTGCTCAGTGAAAGA TERM 594 501704 - 501678 - R 100 -15.4 -3.65812 | opp_overlap 501678, overlap 501675 TTCTGCTCAACACAA GTTTATGATTGC GTT GCAATCATAAAC TTGCTCAGTGAAAGA TERM 595 501712 - 501731 + r 78 -9.4 -3.18768 | overlap 501710 501714 TCATAAACTTGCTCA GTGAAAGA TTTT TCTTTCAC TCTATTAATATTGAA Cphy_0391 502831 - 501779 - | hypothetical protein TERM 596 502403 - 502415 + g 73 -9.1 -3.35723 | opp_overlap 502402, overlap 502400 AATGACAGGTAATAT GGCTG CAA CAGCC TGTGTTCTTTCAATA Cphy_0392 503847 - 502831 - | NAD-dependent epimerase/dehydratase TERM 597 503513 - 503523 + g 88 -5.4 -5.52986 | TGATACTCATTTCCG TTCG TAC CGAA TTTTTTTCCTGCCAT Cphy_0393 504230 - 505210 + | binding-protein-dependent transport systems inner membrane component Cphy_0394 505226 - 506137 + | binding-protein-dependent transport systems inner membrane component Cphy_0395 506211 - 507890 + | extracellular solute-binding protein TERM 598 507904 - 507952 + F 82 -7.6 -4.59853 | opp_overlap 507899 507904, overlap 507951 AAAAAATTAAGATAA GGCTGCTGTGAAATGAAATT GTATGTAGG AAGTTCATTTGTCAGCAGCC TTTTTAAGAGGTTAA TERM 599 507952 - 507904 - f 74 -7.6 -3.8714 | opp_overlap 507904 507951, overlap 507899 AAAAAATTAAGATAA GGCTGCTGTGAAATGAAATT GTATGTAGG AAGTTCATTTGTCAGCAGCC TTTTTAAGAGGTTAA Cphy_0396 507971 - 509302 + | hypothetical protein TERM 600 509377 - 509362 - f 80 -10.4 -2.73364 | GTTTCAGTTTAACTA GCGCGT CGCA ACGCGC AGATAGGTACTCATA Cphy_0397 509392 - 510393 + | D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding TERM 601 511075 - 511061 - g 80 -10 -3.51161 | GAAACTGGCATAGAA GAGAGG ATT CCTCTC CAATGATACTTGCAA Cphy_0398 510532 - 511797 + | oxidoreductase domain-containing protein Cphy_0399 511866 - 513032 + | GCN5-related N-acetyltransferase Cphy_0400 513123 - 513443 + | sec-independent translocation protein mttA/Hcf106 Cphy_0401 513617 - 513796 + | sec-independent translocation protein mttA/Hcf106 Cphy_0402 513786 - 514592 + | Sec-independent protein translocase, TatC subunit TERM 602 514636 - 514687 + F 76 -6.1 -4.66264 | gap 1, opp_overlap 514621 514639, overlap 514639 TTTATTAAGTATAAT AAACCCGAATAACAATCCTTGCAG TAAGT CT-TAAGGATTAATATTCGGGTTA TTTTTAAGCATTTTA TERM 603 514639 - 514684 + F 82 -7.8 -4.42235 | gap 1, opp_overlap 514639, overlap 514636 ATTAAGTATAATAAA CCCGAATAACAATCCTTGCAG TAAGT CT-TAAGGATTAATATTCGGG TTATTTTTAAGCATT TERM 604 514684 - 514639 - f 82 -7.8 -4.40132 | gap 1, opp_overlap 514639 514636 ATTAAGTATAATAAA CCCGAATAACAATCCTTGCAG TAAGT CTT-AAGGATTAATATTCGGG TTATTTTTAAGCATT Cphy_0403 514812 - 515024 + | 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein Cphy_0404 515021 - 515602 + | hypothetical protein TERM 605 515630 - 515666 + F 76 -5.3 -5.07652 | gap 1, opp_overlap 515630 AACTATAAATAATTA CACCCTCCT-TTTTAT TGTGGT ATAATATGGGAGGGTG TTTTCTTTTACAAAG Cphy_0405 515791 - 516495 + | polysaccharide deacetylase TERM 606 516758 - 516713 - T 100 -14.5 -5.01535 | gap 1, opp_overlap 516713 TTAGAATCATAAAAA GTGTATCAAAATGG-TTAGA CACATAT TCTAAACCATTTTGATACAC TTTTTTATTATTTTC TERM 607 516713 - 516758 + T 100 -14.5 -5.77677 | gap 1, opp_overlap 516713 TTAGAATCATAAAAA GTGTATCAAAATGG-TTAGA CACATAT TCTAAACCATTTTGATACAC TTTTTTATTATTTTC TERM 608 516807 - 516831 + T 90 -10.1 -3.96618 | opp_overlap 516812 516813, overlap 516812 ATTATCCATGATGAG GAAAAGTACGC GAA GCGTAATTTTC TTATTTAAGGTTAGC TERM 609 516812 - 516826 + T 70 -4.2 -5.00196 | opp_overlap 516812 516813, overlap 516807 CCATGATGAGGAAAA GTACGC GAA GCGTAA TTTTCTTATTTAAGG Cphy_0406 517254 - 516832 - | histidine triad (HIT) protein Cphy_0407 517848 - 517327 - | hypothetical protein Cphy_0408 518804 - 517863 - | putative radical SAM protein TERM 610 518934 - 518964 + r 77 -8.5 -3.70104 | AAAAAAGTGGACTTT TTATGAGAAATAG CTGCA CAATTTCTCATAA TTGTATTAACTACTT Cphy_0409 520125 - 518974 - | malate dehydrogenase TERM 611 520284 - 520301 + H 70 -8.4 -3.04415 | opp_overlap 520280 520276, overlap 520280 AATGATAGAAAGTTT GCCCTC TTATCT GAGGGC TATACTTTCATAATA Cphy_0410 520544 - 522496 + | transcription termination factor Rho Cphy_0411 522664 - 522876 + | ribosomal protein L31 TERM 612 522902 - 522929 + F 87 -7.8 -4.78149 | opp_overlap 522901 522902 522904, overlap 522904 AATATTGCATAAAAT CAGGTTGAGGTT GTAT AATCTCAACCTA TTTTTAAATTGTAAA TERM 613 522927 - 522904 - f 71 -8.2 -3.18044 | opp_overlap 522904 522902, overlap 522902 522901 TATTGCATAAAATCA GGTTGAGGTT GTAT AATCTCAACC TATTTTTAAATTGTA TERM 614 522904 - 522927 + F 91 -10.4 -4.00465 | opp_overlap 522902 522901 522904, overlap 522902 TATTGCATAAAATCA GGTTGAGGTT GTAT AATCTCAACC TATTTTTAAATTGTA Cphy_0412 522996 - 524594 + | hypothetical protein Cphy_0413 524625 - 525464 + | protein-(glutamine-N5) methyltransferase, release factor-specific Cphy_0414 525835 - 526911 + | peptide chain release factor 1 TERM 615 527000 - 527052 + F 100 -17.4 -2.9155 | opp_overlap 527010 527013, overlap 527010 527013 CTTCACACTTCACAC TTACCATAAACAAGGAAAAGTTCG CAAAA CGTGCTTTTCCTTGTTTATAGTAA TATGATATTGGCAGG TERM 616 527010 - 527042 + F 100 -11.4 -4.00782 | opp_overlap 527010 527013, overlap 527000 527013 CACACTTACCATAAA CAAGGAAAAGTTCG CAAAA CGTGCTTTTCCTTG TTTATAGTAATATGA TERM 617 527042 - 527010 - f 90 -9.9 -3.98661 | opp_overlap 527000 527010 527013, overlap 527013 CACACTTACCATAAA CAAGGAAAAGTTCGC AAA ACGTGCTTTTCCTTG TTTATAGTAATATGA TERM 618 527013 - 527039 + F 74 -7.3 -4.12254 | opp_overlap 527010 527013, overlap 527010 527000 ACTTACCATAAACAA GGAAAAGTTCG CAAAA CGTGCTTTTCC TTGTTTATAGTAATA TERM 619 527604 - 527635 + G 71 -7.4 -3.97042 | overlap 527605 527608 TATTCCATCTTTCAC GCAGTATCAGCATT TTGT AATGCTGGTATTGA TTTAGTTGGTGGTAA TERM 620 527605 - 527634 + G 79 -10.9 -2.97743 | overlap 527604 527608 ATTCCATCTTTCACG CAGTATCAGCATT TTGT AATGCTGGTATTG ATTTAGTTGGTGGTA TERM 621 527608 - 527631 + G 75 -9 -3.62539 | overlap 527605 527604 CCATCTTTCACGCAG TATCAGCATT TTGT AATGCTGGTA TTGATTTAGTTGGTG TERM 622 528476 - 528447 - g 72 -3.7 -4.99861 | gap 1, opp_overlap 528466, overlap 528435 528449 528466 CATCAAGGAGAAAAA TCCTTACCAGAA GGTAAAA TCCTGGT-AGGA TAGTGTGAAATGGGC Cphy_0415 527112 - 528479 + | H(+)-transporting two-sector ATPase TERM 623 528583 - 528569 - g 76 -7.8 -4.07568 | overlap 528578 GCCGTTTTGGTAAAA GCGTAG CAA CCACGC TTGCAGAAGGTGGAT Cphy_0416 528520 - 529173 + | TrkA domain-containing protein Cphy_0417 529257 - 530051 + | tRNA/rRNA methyltransferase (SpoU) Cphy_0418 530556 - 532223 + | hypothetical protein Cphy_0419 532429 - 533778 + | glucose-6-phosphate isomerase TERM 624 533875 - 533898 + F 90 -8.9 -4.56969 | ATATTAAAGTTTTGA GAGGCTGTT TCGTGT AACGGCCTC TTTCTTTATCGCATT TERM 625 534365 - 534351 - g 73 -8.6 -3.45832 | GAAGTTGATAATGAA CAGATG GAA CATCTG ATAAAACGTGAGTTA TERM 626 534609 - 534591 - g 70 -3.2 -4.98255 | overlap 534592 GCTGAACCAGAAAAA TTAAAAGA CTA TCTTTTAG CAAGTGCATATTTCC Cphy_0420 534111 - 535304 + | patatin TERM 627 535827 - 535813 - g 80 -8.6 -3.97308 | GCGAAATATAGCAAA GTTCCA GTA TGGAAC GGATTAACGGATGAA Cphy_0421 535450 - 536388 + | ornithine carbamoyltransferase TERM 628 536419 - 536385 - f 77 -8.9 -3.21772 | opp_overlap 536390, overlap 536383 536390 AACTCTCGGAGAAGA GTAAATTGTGAAA GTCAAGATT TTTCACAATTTAC TGATCAGGCGTGAAA Cphy_0422 536737 - 537597 + | hypothetical protein TERM 629 537668 - 537619 - f 74 -8.8 -3.18991 | gap 1, opp_overlap 537621, overlap 537617 537616 537621 ATAACACTAAAATGA TACAGGGCTGTTGAAT-ACAC AGATTCCAA GTGTGATTCAGCAGCCCTGTT TTTGGTAAAATAGCG TERM 630 537666 - 537621 - f 87 -11.4 -3.14195 | gap 1, opp_overlap 537621, overlap 537619 537617 537616 AACACTAAAATGATA CAGGGCTGTTGAAT-ACAC AGATTCCAA GTGTGATTCAGCAGCCCTG TTTTTGGTAAAATAG TERM 631 537621 - 537666 + F 100 -13.6 -4.7373 | gap 1, opp_overlap 537621 537619 537617 537616 AACACTAAAATGATA CAGGGCTGTTGAATACACA GATTCCAAG TGTG-ATTCAGCAGCCCTG TTTTTGGTAAAATAG TERM 632 537721 - 537737 + F 84 -10.9 -3.17901 | opp_overlap 537720 537715 537711, overlap 537734 AGTAAGGTAGCGAAT TGTCAGC GTA GCTGACA TTCGATTACGAGTAT Cphy_0423 537817 - 538140 + | hypothetical protein Cphy_0424 538204 - 538971 + | Baf family transcriptional activator TERM 633 539056 - 539078 + G 77 -8.4 -3.96051 | overlap 539057 TGGTACTAGGGCCAA TGGCAGGTGT TAC AGACCTGCCG TTTCGTCTCTTATGT TERM 634 539057 - 539077 + G 76 -9.7 -2.96546 | overlap 539056 GGTACTAGGGCCAAT GGCAGGTGT TAC AGACCTGCC GTTTCGTCTCTTATG Cphy_0425 539001 - 539975 + | NifR3 family TIM-barrel protein TERM 635 540785 - 540769 - g 81 -7.3 -4.55287 | opp_overlap 540769 GCTAGTCAGAGAAAA CGTCTTG GAA CAAAACG TGGCTTTATTGCGGT Cphy_0426 540343 - 541431 + | aspartate-semialdehyde dehydrogenase TERM 636 541586 - 541603 + T 86 -4.1 -5.80817 | opp_overlap 541586 ATCATCGAAGCAAAA GTCAAAC TAAT GATTGAC TTTTTTTATATTAGG Cphy_0427 542369 - 541638 - | hypothetical protein TERM 637 542296 - 542308 + g 74 -4.1 -5.1361 | ATTTCACCTATTTTT TGACG CTC TGTCA TTTTTTCGCGTTTCT TERM 638 542485 - 542532 + r 100 -14.6 -3.4243 | opp_overlap 542487 542498, overlap 542487 542490 542498 AATTACTATGAATAA AATAATGAAAAAATAGCACATA TTTC TATGTGCTATTTCTTCATTATA TATTAGTTTTACATA TERM 639 542487 - 542530 + r 100 -17.2 -3.27177 | opp_overlap 542487 542498, overlap 542485 542490 542498 TTACTATGAATAAAA TAATGAAAAAATAGCACATA TTTC TATGTGCTATTTCTTCATTA TATATTAGTTTTACA TERM 640 542530 - 542487 - R 100 -19.4 -4.73613 | opp_overlap 542487 542485 542490 542498, overlap 542498 TTACTATGAATAAAA TAATGAAAAAATAGCACATA TTTC TATGTGCTATTTCTTCATTA TATATTAGTTTTACA TERM 641 542490 - 542527 + r 100 -14.5 -3.75419 | opp_overlap 542487 542498, overlap 542487 542485 542498 CTATGAATAAAATAA TGAAAAAATAGCACATA TTTC TATGTGCTATTTCTTCA TTATATATTAGTTTT TERM 642 542498 - 542519 + r 95 -10.3 -4.38203 | opp_overlap 542487 542498, overlap 542490 542487 542485 AAAATAATGAAAAAA TAGCACATA TTTC TATGTGCTA TTTCTTCATTATATA TERM 643 542519 - 542498 - R 100 -10.3 -5.43514 | opp_overlap 542498 542490 542487 542485, overlap 542487 AAAATAATGAAAAAA TAGCACATA TTTC TATGTGCTA TTTCTTCATTATATA Cphy_0428 544196 - 542541 - | hypothetical protein TERM 644 544282 - 544300 + r 73 -8.2 -3.54741 | CTGGTGTAGATCGCT TATTCCCG AAA TGGGAATA TTTGAAAGACTAATG Cphy_0429 545874 - 544531 - | uracil-xanthine permease TERM 645 547027 - 547015 - H 70 -6.3 -4.17762 | TATTTCTTAAAATAA CGAAA TGG TTTCG TAGCGGAAAGCAAAG TERM 646 548015 - 547995 - g 71 -7 -3.86897 | CTCATTGTGTAGAAA TTTCCTTA CAGCC TAAGGAAA GCAAGGAACTAGTAT Cphy_0430 547250 - 549745 + | glycosyltransferase 36 TERM 647 549767 - 549793 + F 82 -9.6 -3.63046 | overlap 549791 AGCTTACTAGCCTCA TGAATTATTTGC AAG GCAAGTAGTTCA TTGTATGATTCTCCT TERM 648 549812 - 549845 + F 100 -20.5 -3.22476 | opp_overlap 549817, overlap 549817 TATGATTCTCCTATC CGAAAGAGAGTGTCC GAAG GGGCACTCTCTTTCG TTAATAATAGATAAT TERM 649 549840 - 549817 - f 89 -11 -3.59979 | opp_overlap 549817 549812 TTCTCCTATCCGAAA GAGAGTGTCC GAAG GGGCACTCTC TTTCGTTAATAATAG TERM 650 549817 - 549840 + F 100 -13.2 -3.97042 | opp_overlap 549817, overlap 549812 TTCTCCTATCCGAAA GAGAGTGTCC GAAG GGGCACTCTC TTTCGTTAATAATAG TERM 651 549950 - 549931 - f 89 -7.9 -4.95758 | opp_overlap 549931 549948 AGTATATGATAAAAA CGCTATG ATTCAA CATAGCG TTCATACAGACGCAT Cphy_0431 550144 - 551712 + | extracellular solute-binding protein Cphy_0432 551801 - 552742 + | binding-protein-dependent transport systems inner membrane component TERM 652 552959 - 552981 + G 85 -2.6 -5.85737 | overlap 552958 GATGTCCTTAGTAGG GTGATGGATG GAG CTTTCACCAC TTTTTTTGTTGGTAT Cphy_0433 552764 - 553552 + | binding-protein-dependent transport systems inner membrane component Cphy_0434 553633 - 555201 + | ABC transporter related Cphy_0435 555303 - 555656 + | hypothetical protein TERM 653 555702 - 555754 + F 100 -16 -4.28548 | gap 1, opp_overlap 555735 555736 ATGATATTTACTGCA TGCTCCT-CAATGGTATAGGTTA AATGTAAA TAACCTATACCATAGAAGGAGCA TTTTCATGACTAAAT Cphy_0436 555968 - 557662 + | methyl-accepting chemotaxis sensory transducer TERM 654 557713 - 557682 - f 71 -8.8 -2.91822 | opp_overlap 557684 557688, overlap 557681 TATAAGAATTCAAAT GCTTAAGGGAACTC GTGA GAGTTCCCTTAATT CCTATATTCTGTAGG TERM 655 557684 - 557711 + F 100 -15.8 -3.41262 | opp_overlap 557682 557681, overlap 557688 TAAGAATTCAAATGC TTAAGGGAACTC GTGA GAGTTCCCTTAA TTCCTATATTCTGTA TERM 656 557688 - 557707 + F 91 -12.2 -3.456 | opp_overlap 557682 557681, overlap 557684 AATTCAAATGCTTAA GGGAACTC GTGA GAGTTCCC TTAATTCCTATATTC TERM 657 557813 - 557799 - f 72 -5.8 -4.48987 | opp_overlap 557798 CTTTTAGAAGTAAAA TGAAAA CCA TTTTCA AATTATAATTATTGC Cphy_0437 557869 - 558348 + | ferric uptake regulator family protein TERM 658 558686 - 558714 + F 71 -6.9 -3.97709 | CTTGGAATTTCTTTG GTAGTATTTTATA AGG TGTCAAATACTAC TTCTTCTTGCCTGAT TERM 659 558819 - 558840 + F 70 -4.4 -4.78326 | opp_overlap 558806 558819 CACCATTCCTATGAA TGAGACAG ATATGG CTGCCTCA TTTGTTTGTTTACCC Cphy_0438 558894 - 559904 + | periplasmic solute binding protein Cphy_0439 559906 - 560619 + | ABC transporter related TERM 660 561310 - 561324 + G 73 -8.6 -3.32202 | overlap 561308 CTGTTATCCTAAGTT CTGCAA TCA TTGCAG TATTATGTGCAACTC Cphy_0440 560616 - 561461 + | ABC-3 protein TERM 661 561994 - 562009 + G 81 -9 -4.03234 | opp_overlap 561984 TGCAACTGCCTGCTG CTCCAG CGGT CTGGAG TTTATCTGGGAGGAG TERM 662 562056 - 562039 - g 75 -9.9 -2.83747 | GAATTCCCATAAGTA TCCGGAT GAAT ATCCGGA GGATGAAACAGAAAT Cphy_0441 561500 - 562153 + | hypothetical protein TERM 663 562234 - 562285 + F 73 -9.2 -2.91269 | gap 1, opp_overlap 562242, overlap 562242 TTAAAGACTAATATG GTAGAAAAGTAAGGAATGATGAT GTATTTA ATCATC-TTCCTTACTTTTTTAG ATTATATTTCATAAA TERM 664 562242 - 562277 + F 95 -8.6 -5.20154 | gap 1, opp_overlap 562242, overlap 562234 TAATATGGTAGAAAA GTAAGGAATGATGAT GTATTTA ATCATC-TTCCTTAC TTTTTTAGATTATAT TERM 665 562277 - 562242 - f 88 -8.6 -4.42619 | gap 1, opp_overlap 562242 562234 TAATATGGTAGAAAA GTAAGGAATGATGAT GTATTTA ATCATC-TTCCTTAC TTTTTTAGATTATAT TERM 666 562760 - 562787 + G 76 -3.2 -5.26918 | TAGGTTTGATTCTGG CGGTCGGAGGCT TAAT GGCCCTCGGGCG TTTTTTATGGCGTAT TERM 667 562842 - 562829 - g 75 -5.3 -4.87665 | GTGGAGCCAGAAAAA TAGAG TATG CTCTA AGAAATGATATGTTT Cphy_0442 562582 - 564438 + | ABC transporter related Cphy_0443 564450 - 566216 + | ABC transporter related TERM 668 566260 - 566292 + F 100 -9.3 -5.49569 | opp_overlap 566260 TGTTTGAAGAAGAAA GAGACTTCTTTAG AGGTTTA CTAGGGAAGTCTC TTTTTTATATTCATC TERM 669 566440 - 566404 - f 82 -7.5 -4.59069 | opp_overlap 566412, overlap 566406 566408 566422 ACTATAAGTAGAAAA CATATAAAGAGGTAAAA TTT TATTACCTCTTTATCTA AATAGAAAGAGATAA TERM 670 566438 - 566406 - f 74 -7.9 -3.89837 | opp_overlap 566412, overlap 566404 566408 566422 TATAAGTAGAAAACA TATAAAGAGGTAAAA TTT TATTACCTCTTTATC TAAATAGAAAGAGAT TERM 671 566436 - 566408 - f 85 -10.5 -3.51909 | opp_overlap 566412, overlap 566406 566404 566422 TAAGTAGAAAACATA TAAAGAGGTAAAA TTT TATTACCTCTTTA TCTAAATAGAAAGAG TERM 672 566412 - 566432 + F 71 -6.9 -4.0641 | opp_overlap 566408 566406 566404 566422 TAGAAAACATATAAA GAGGTAAAA TTT TATTACCTC TTTATCTAAATAGAA Cphy_0444 566471 - 567052 + | GCN5-related N-acetyltransferase Cphy_0445 567284 - 568786 + | SCP-like extracellular TERM 673 568859 - 568893 + F 88 -8.6 -4.46212 | opp_overlap 568851, overlap 568860 ATAATAGCAAATCTT TTTGGGGTGTCACG CGAATGA TGTGGCACCCCAAC TTTTATCATGGGAAG TERM 674 568860 - 568892 + F 89 -12.1 -3.27406 | opp_overlap 568851, overlap 568859 TAATAGCAAATCTTT TTGGGGTGTCACG CGAATGA TGTGGCACCCCAA CTTTTATCATGGGAA Cphy_0446 569177 - 570013 + | beta-lactamase domain-containing protein TERM 675 570111 - 570101 - f 87 -5.4 -5.59502 | CAAAAAACTAAAAAA TGTC ATT GACA GTAACGATTTTTTGT TERM 676 570289 - 570308 + F 100 -7.2 -5.80248 | opp_overlap 570289 TTATGAGATTTGAAA GTGGATAG CGTG CTATTCAC TTTTTTTGTATGTTA Cphy_0447 570388 - 570882 + | translation initiation factor IF-3 Cphy_0448 570973 - 571170 + | ribosomal protein L35 TERM 677 571428 - 571399 - g 74 -10.1 -2.62043 | GCTAGAATCAATGCA GCTGCAAGAATGA ATGG TCTTTCTTACAGC AAATTCATGTACGGC Cphy_0449 571198 - 571554 + | ribosomal protein L20 TERM 678 571577 - 571627 + F 100 -18 -5.55769 | opp_overlap 571593 571595, overlap 571580 TCGGTGATTTTATAG GTAGGAGCATTTACAAGATAACTT TAA AAGTTATGTTGTAAATGCTTCTTC TTTTTTATTATAAAA TERM 679 571580 - 571624 + F 100 -18.3 -4.84921 | opp_overlap 571593 571595, overlap 571577 GTGATTTTATAGGTA GGAGCATTTACAAGATAACTT TAA AAGTTATGTTGTAAATGCTTC TTCTTTTTTATTATA TERM 680 574280 - 574253 - g 71 -4.9 -4.57353 | CGTCATCATAGAAAA TGGAAAGGATA GCCCTG TTTCCCTTCCA GATATGGTTTCAGCA Cphy_0450 571881 - 574442 + | hypothetical protein TERM 681 574467 - 574444 - f 89 -11.2 -3.5764 | AAGTTGAGGCGTAAA GATGAAAGAA TTAA TTCTTTCATC CGAAGATTTGTGCTA TERM 682 574474 - 574490 + F 75 -9.5 -2.84053 | opp_overlap 574474, overlap 574473 TCTTTCATCCGAAGA TTTGTGC TAT GCACAAA GTTTCCATACTTTGA TERM 683 574490 - 574474 - f 76 -9.5 -3.05844 | opp_overlap 574474 574473 TCTTTCATCCGAAGA TTTGTGC TAT GCACAAA GTTTCCATACTTTGA Cphy_0451 574524 - 576572 + | hypothetical protein Cphy_0452 576883 - 577551 + | hypothetical protein Cphy_0453 577548 - 578456 + | hypothetical protein Cphy_0454 578474 - 578797 + | hypothetical protein Cphy_0455 579149 - 580342 + | aminotransferase class I and II Cphy_0456 580553 - 581356 + | hypothetical protein TERM 684 581428 - 581388 - f 72 -9.2 -2.78715 | gap 1, opp_overlap 581388 AACTTCCTTAGTATA CGAGAACAGTTCGAGT-TA GTTT TATACATGAACTGTTCTCG TTTTTTCCATACGGT TERM 685 581388 - 581428 + F 100 -11.4 -5.09225 | gap 1, opp_overlap 581388 AACTTCCTTAGTATA CGAGAACAGTTCGAGT-TA GTTT TATACATGAACTGTTCTCG TTTTTTCCATACGGT Cphy_0457 581798 - 585355 + | hypothetical protein Cphy_0458 585371 - 586633 + | hypothetical protein TERM 686 587087 - 587066 - g 80 -2.3 -5.75822 | TACAAAGGAAAAAAA GACAAGC GGATTTTT GCTTATC CCATCATAAGTATAA Cphy_0459 586714 - 587550 + | hypothetical protein Cphy_0460 587565 - 588851 + | hypothetical protein TERM 687 589016 - 588968 - T 100 -11.4 -4.9448 | opp_overlap 588974, overlap 588969 588974 ACTTATGAAAGAAAA TTAAAAGAACTTATAAAAGGTA GTAAG TACCTTCTATAAGTTCTTTTTG TTGGTATTTATAGGT TERM 688 589015 - 588969 - T 100 -14.9 -3.55603 | opp_overlap 588974, overlap 588968 588974 CTTATGAAAGAAAAT TAAAAGAACTTATAAAAGGTA GTAAG TACCTTCTATAAGTTCTTTTT GTTGGTATTTATAGG TERM 689 589010 - 588974 - T 100 -14.8 -4.81644 | opp_overlap 588974, overlap 588969 588968 GAAAGAAAATTAAAA GAACTTATAAAAGGTA GTAAG TACCTTCTATAAGTTC TTTTTGTTGGTATTT TERM 690 588974 - 589010 + T 100 -12.6 -5.20606 | opp_overlap 588974 588969 588968 GAAAGAAAATTAAAA GAACTTATAAAAGGTA GTAAG TACCTTCTATAAGTTC TTTTTGTTGGTATTT TERM 691 589059 - 589086 + T 100 -14.4 -3.69323 | opp_overlap 589062, overlap 589052 589062 AGCATATTCTTATGA TAAGTGAATTGG TTTT CCAATTCACTTA TTTAAGTAGTCATAG TERM 692 589062 - 589083 + T 100 -11.7 -3.97674 | opp_overlap 589062, overlap 589059 ATATTCTTATGATAA GTGAATTGG TTTT CCAATTCAC TTATTTAAGTAGTCA TERM 693 589083 - 589062 - T 91 -11.7 -3.41229 | opp_overlap 589059 589062 ATATTCTTATGATAA GTGAATTGG TTTT CCAATTCAC TTATTTAAGTAGTCA Cphy_0461 589747 - 589088 - | TetR family transcriptional regulator TERM 694 590013 - 590000 - H 70 -8.1 -3.06696 | TTTTTCTTTAATACA CGTGC CAGA GCACG CAGAAAGGAGTTACT Cphy_0462 590029 - 591552 + | NAD-dependent epimerase/dehydratase TERM 695 591562 - 591605 + T 85 -9.2 -4.15328 | gap 2, opp_overlap 591537 591562 591560 591556 GTTTAAAACCAAATA CCCAGTAGAAT-ATCAC-TC AAAAGA GACGTGATTGTTCTACTGGG TTTCTGCTTTAGCTT Cphy_0463 592304 - 591657 - | peroxiredoxin TERM 696 591937 - 591927 - G 86 -5.4 -5.28778 | AGGATCGATAAAAAA TACG TTA CGTA CAGTTTGAGTGGTAC Cphy_0464 593595 - 592816 - | AraC family transcriptional regulator TERM 697 593248 - 593270 + g 100 -4.9 -6.25578 | TTCCCATTCCTCTAA TAGCATCCT AACAA AGGGTGTTA TTTTTTTTGTTTGGT Cphy_0465 593931 - 594581 + | hypothetical protein TERM 698 594731 - 594701 - g 70 -8.6 -3.03124 | opp_overlap 594701 594699 594697 594725, overlap 594725 TTGGATGCGGTAACA TTAGTGATATTT ATATGCA AAATATCACTAA TCTATTTGTGAATTT TERM 699 594701 - 594731 + G 73 -8.6 -3.36662 | opp_overlap 594701 594725, overlap 594699 594697 594725 TTGGATGCGGTAACA TTAGTGATATTT ATATGCA AAATATCACTAA TCTATTTGTGAATTT Cphy_0466 594661 - 595767 + | oxidoreductase domain-containing protein TERM 700 596020 - 596072 + F 93 -8.7 -4.91987 | opp_overlap 596020 ATGAATAAAAAGATA GAGTTAAAAGGGAGAATTTTGATAG GAT TTATGGAGAATCTACCTTTTAACTC TTTTCTTATTGGCTT Cphy_0467 596301 - 597020 + | hypothetical protein Cphy_0468 597010 - 597909 + | IS605 family transposase OrfB Cphy_0469 598077 - 598439 + | glyoxalase/bleomycin resistance protein/dioxygenase Cphy_0470 598623 - 598913 + | hypothetical protein Cphy_0471 599021 - 599428 + | hypothetical protein TERM 701 599768 - 599795 + F 100 -7.7 -5.63504 | TTAAGGTGGTACCAC GGTTCTTCGTC CTTATC GGCGAGGGACC TTTTTTTGTGCAATT TERM 702 600483 - 600493 + G 70 -6.8 -4.03093 | opp_overlap 600483 TTCCCGTATTATCAA CTGG TGT CCAG TTTGTCATACTTCTA Cphy_0472 599953 - 602631 + | valyl-tRNA synthetase TERM 703 602711 - 602653 - f 100 -13.7 -4.13767 | opp_overlap 602663, overlap 602659 602662 602663 CCCTTTACGGTAAAA TAGAAATTAGGCATCAGAGTT-TTACGAA ACA TTCGTAAAAACTCTGATG-CTTTTTTCTA TCTTTACCGATATTC TERM 704 602706 - 602659 - f 91 -9.4 -4.45771 | gap 1, opp_overlap 602663, overlap 602653 602662 602663 ACGGTAAAATAGAAA TTAGGCATCAGAGTT-TTACGAA ACA TTCGTAAAAACTCTGATGCTTTT TTCTATCTTTACCGA TERM 705 602703 - 602662 - f 100 -15.5 -3.18509 | gap 1, opp_overlap 602663, overlap 602659 602653 602663 GTAAAATAGAAATTA GGCATCAGAGTT-TTACGAA ACA TTCGTAAAAACTCTGATGCT TTTTTCTATCTTTAC TERM 706 602663 - 602702 + F 100 -19 -5.51046 | gap 1, opp_overlap 602662 602659 602653 602663 TAAAATAGAAATTAG GCATCAGAGTT-TTACGAA ACA TTCGTAAAAACTCTGATGC TTTTTTCTATCTTTA TERM 707 602702 - 602663 - f 100 -19 -2.50021 | gap 1, opp_overlap 602663, overlap 602662 602659 602653 TAAAATAGAAATTAG GCATCAGAGTT-TTACGAA ACA TTCGTAAAAACTCTGATGC TTTTTTCTATCTTTA TERM 708 603739 - 603725 - g 74 -3.6 -5.14163 | ATGCAGGAAGAAAAA TAACTG CAT CAATTA TTGGAAATCATACTC Cphy_0473 602764 - 604167 + | hypothetical protein TERM 709 604449 - 604478 + F 79 -7.2 -4.52589 | gap 1 CTTAGTAGGCTCGAA GTTTGTGCC-GAG GATTA CGCAGGCACAAAC TTTTATGTGAAAGAA TERM 710 604484 - 604508 + F 82 -8.7 -4.09864 | AGGCACAAACTTTTA TGTGAAAGAAC GTT GTTATTTCACA TTTTCCCCAATGCAT Cphy_0474 604694 - 604831 + | hypothetical protein TERM 711 606158 - 606140 - g 95 -8.2 -4.81734 | AAAGATTATGAAAAA GCATTAAC ATT GTTAACGC AGGCTTATTCTTTTG Cphy_0475 604922 - 606331 + | TPR repeat-containing protein TERM 712 606388 - 606408 + F 100 -8.3 -5.64274 | opp_overlap 606388 TAAAAGATTTAAAAA GACATTTCG GAA CGGAGTGTC TTTTTTTCTGAGTAC Cphy_0476 606468 - 606851 + | anti-sigma-factor antagonist Cphy_0477 606901 - 607374 + | anti-sigma F factor Cphy_0478 607410 - 608126 + | FliA/WhiG family RNA polymerase sigma factor Cphy_0479 608639 - 609142 + | stage V sporulation protein AC Cphy_0480 609211 - 610278 + | stage V sporulation protein AD Cphy_0481 610291 - 610647 + | stage V sporulation protein AE TERM 713 610723 - 610672 - f 73 -7.7 -3.66017 | gap 1, opp_overlap 610680, overlap 610675 610680 AGAATGATAAATCAA TAATAAA-ACATCCTTTGTGAAAT GAGTT ACTTCTCGAAGGATGTTTTTATTA ACAAAGAAATTTCTT TERM 714 610714 - 610680 - f 82 -6.5 -4.96523 | opp_overlap 610680, overlap 610675 610672 AAATCAATAATAAAA CATCCTTTGTGAAAT GAGTT ACTTCTCGAAGGATG TTTTTATTAACAAAG TERM 715 610680 - 610714 + F 88 -7.2 -5.06414 | opp_overlap 610675 610672 610680 AAATCAATAATAAAA CATCCTTTGTGAAATG AGT TACTTCTCGAAGGATG TTTTTATTAACAAAG TERM 716 610773 - 610761 - f 79 -2.7 -5.85737 | ATATCAATAAAAAAA TCTCT GCT AAAGA TTCACAGGCAAATGC Cphy_0482 611142 - 611612 + | hypothetical protein Cphy_0483 612076 - 612411 + | cupin 2 domain-containing protein Cphy_0484 612448 - 613455 + | LacI family transcription regulator Cphy_0485 613468 - 614448 + | binding-protein-dependent transport systems inner membrane component Cphy_0486 614460 - 615353 + | binding-protein-dependent transport systems inner membrane component Cphy_0487 615427 - 617103 + | extracellular solute-binding protein TERM 717 617159 - 617199 + F 84 -10 -3.46602 | gap 1, opp_overlap 617159 617161 617174 ACTATTTTGAAAGGA GATGCTGCAAAATTACTAT GCAA ATAG-ATTTTTGCGGCATC TTATACTATACCGGG TERM 718 618152 - 618164 + G 70 -5.5 -4.41114 | overlap 618145 CTTTATGACAGCCAT GCGGT TCG ATCGC TTTCTTCTGTACTGA Cphy_0488 617267 - 619552 + | heparinase II/III family protein Cphy_0489 619572 - 621440 + | heparinase II/III family protein TERM 719 621514 - 621530 + G 74 -10.1 -2.59527 | opp_overlap 621513 621512 621514, overlap 621513 621510 TTAGAAGGTAAAATC GCACTGG TAA CCGGTGC ATGTTATGGTATTGG Cphy_0490 621481 - 622278 + | gluconate 5-dehydrogenase Cphy_0491 622395 - 623030 + | hypothetical protein Cphy_0492 623046 - 627716 + | alginate lyase 2 TERM 720 627921 - 627876 - f 95 -12.3 -3.71378 | gap 1, opp_overlap 627866 TAGTTTATAGTGAAA TGACTATTGCATTATAT-TTGC AGA ACAAAATGTAATGCAATAGTCA CAGGAGGCACGATGG Cphy_0493 627945 - 630125 + | methyl-accepting chemotaxis sensory transducer Cphy_0494 630357 - 631754 + | extracellular solute-binding protein TERM 721 631770 - 631799 + F 81 -4.3 -5.41143 | opp_overlap 631770 ATAAGACTTTATAAA GATGGGTTACCTA TAGC TTGGTAAGTCATC TTTTTTTCAGAGGTC Cphy_0495 631901 - 633715 + | histidine kinase internal region Cphy_0496 633810 - 635441 + | two component AraC family transcriptional regulator TERM 722 635479 - 635445 - T 100 -10.9 -4.99035 | gap 1, opp_overlap 635445 TTAGGTATATAAAAA CGAGTGGAAAACGTTT CGCT AGACGTTT-CCACTCG TTTTTTGATTCCATA TERM 723 635445 - 635479 + T 100 -13.1 -5.28481 | gap 1, opp_overlap 635445 TTAGGTATATAAAAA CGAGTGGAAAACGTTT CGCT AGACGTTT-CCACTCG TTTTTTGATTCCATA Cphy_0497 638291 - 635568 - | glycosyl transferase family protein TERM 724 638111 - 638096 - G 71 -9 -3.2794 | opp_overlap 638107 CTGGATCGATATTAA CCTGAC CGAT GTCAGG GGCTGATCCTATGAT TERM 725 638508 - 638540 + r 100 -11.5 -4.38712 | opp_overlap 638508 CTAGGCATAAAAAAA GAATGAAAAGCTTAT TTC GTATGCTTTTCATTC TTTTATAAAGGTAAG TERM 726 638540 - 638508 - R 100 -10.8 -5.64274 | opp_overlap 638508 CTAGGCATAAAAAAA GAATGAAAAGCTTA TTTCG TATGCTTTTCATTC TTTTATAAAGGTAAG Cphy_0498 641344 - 638612 - | glycosyl transferase family protein TERM 727 640253 - 640271 + g 84 -3.1 -5.63374 | opp_overlap 640252 TTCATAATAAGAACC TTCCCCA ACGGC TGGGAAA TTTTTTTCATCTTGA Cphy_0499 642212 - 641556 - | hypothetical protein TERM 728 642230 - 642242 + H 79 -4.7 -5.16071 | TTAAACCTCTATTCT GGCGC ATG GCACC TTTTTATTAATCATT TERM 729 642918 - 642932 + G 70 -6.4 -4.15654 | ATAGACTCCAGTGGT TGCATC ATG GGTGCA TTATTCTTCTTATTA Cphy_0500 642483 - 643010 + | VanZ family protein Cphy_0501 643232 - 643059 - | hypothetical protein TERM 730 643350 - 643312 - H 82 -9.7 -3.61536 | opp_overlap 643312 643316 643340, overlap 643316 643344 AAGGGAAGTGTGAAA GAAATTCTAAGCCAGCA AAATA CGCTGACTAAGAATCTC TAAGTTTCACACAGA TERM 731 643346 - 643316 - H 78 -6.9 -4.43877 | opp_overlap 643316 643312 643340, overlap 643312 643344 GAAGTGTGAAAGAAA TTCTAAGCCAGCA AAATA CGCTGACTAAGAA TCTCTAAGTTTCACA Cphy_0502 643428 - 644762 + | recombination factor protein RarA Cphy_0503 644853 - 645194 + | hypothetical protein TERM 732 645667 - 645632 - f 87 -11.3 -3.14564 | opp_overlap 645638, overlap 645634 645638 TTAGGTTTTGACGAA TATTAAGCCTGTGAC TCGGTT GCCACAGGCTTAATC AAAAAGGGGAGGATA TERM 733 645665 - 645634 - f 100 -13.9 -3.13522 | opp_overlap 645638, overlap 645632 645638 AGGTTTTGACGAATA TTAAGCCTGTGAC TCGGTT GCCACAGGCTTAA TCAAAAAGGGGAGGA TERM 734 645638 - 645661 + F 70 -8.1 -3.14132 | opp_overlap 645634 645632 645638 TTTGACGAATATTAA GCCTGTGAC TCGGTT GCCACAGGC TTAATCAAAAAGGGG TERM 735 645661 - 645638 - f 85 -10.3 -3.39449 | opp_overlap 645638, overlap 645634 645632 TTTGACGAATATTAA GCCTGTGAC TCGGTT GCCACAGGC TTAATCAAAAAGGGG Cphy_0504 645905 - 646405 + | hypothetical protein TERM 736 646422 - 646450 + F 100 -8.9 -6.15536 | AATAAATGAGTTTTA CAGGTAGTGAGTT GAT GGCTTGCTACCTG TTTTTTTTATTAATT Cphy_0505 646539 - 647039 + | hypothetical protein Cphy_0506 647014 - 647556 + | hypothetical protein TERM 737 647561 - 647588 + F 100 -8.6 -5.60993 | opp_overlap 647560 TATCTAGATAAGACT CTACCAACTA TCAATATT TAGTTGGTAG TTTTTTTATGCGGAA TERM 738 647647 - 647626 - f 78 -9.5 -3.25881 | ACACGAAATATGTAA TGGTTGCCT CGTG AAGCAACCA AAAATAATTAAAGAT Cphy_0507 648281 - 648649 + | hypothetical protein TERM 739 649454 - 649476 + G 76 -6.5 -4.46267 | opp_overlap 649446 649456, overlap 649446 GAAATTATTGTTGAA TACAATTTA CCAAA TAAATTGTA TTTTAGTTACCTTGT TERM 740 649635 - 649653 + G 71 -4.6 -4.82901 | overlap 649636 TTGATAATGATTTAC GTGTTGTT TCA AACAACAA TTTTTATCCAGGAGA TERM 741 649636 - 649652 + G 72 -8.1 -3.49419 | overlap 649635 TGATAATGATTTACG TGTTGTT TCA AACAACA ATTTTTATCCAGGAG TERM 742 649743 - 649753 + G 81 -4 -5.4588 | GTGGAAAGATTTATC CATT AAT AATG TTTTTTGTAGTTTTA Cphy_0508 649202 - 649936 + | hypothetical protein TERM 743 650008 - 649992 - T 100 -13.7 -5.16237 | opp_overlap 649987 AAGCCCATTAAAAAA GCCCCTC GGT GAGGGGC TTAAACTCTTATATG TERM 744 650052 - 650062 + T 74 -5.4 -4.78933 | TCAGTCTGATTTAAG CGTT TGG AACG TTTTCTGTCTTTTGC Cphy_0509 650415 - 650047 - | membrane protein TERM 745 650290 - 650270 - G 79 -6.9 -4.4767 | overlap 650272 CCAGCTATTAGAAAA CAGAATGCT ATG AGCATTCCA GCTGATCCGCTAGAC TERM 746 650288 - 650272 - G 83 -9.5 -3.84585 | overlap 650270 AGCTATTAGAAAACA GAATGCT ATG AGCATTC CAGCTGATCCGCTAG TERM 747 650585 - 650623 + r 100 -9.7 -5.36441 | opp_overlap 650590 650591, overlap 650591 AAAGTTCACCACACA AAAAAGGCTCAATCGAG TTACC CTCGATTGAGCTTTCTA TTTTTTATATGGGAC TERM 748 650618 - 650590 - R 100 -11.8 -5.39721 | opp_overlap 650585 650591, overlap 650591 TCACCACACAAAAAA GGCTCAATCGAG TTACC CTCGATTGAGCT TTCTATTTTTTATAT TERM 749 650591 - 650617 + r 100 -15.3 -4.68607 | opp_overlap 650590 650591, overlap 650585 CACCACACAAAAAAG GCTCAATCGAG TTACC CTCGATTGAGC TTTCTATTTTTTATA TERM 750 650617 - 650591 - R 100 -15.3 -3.82748 | opp_overlap 650591 650585, overlap 650590 CACCACACAAAAAAG GCTCAATCGAG TTACC CTCGATTGAGC TTTCTATTTTTTATA Cphy_0510 651022 - 650678 - | XRE family transcriptional regulator Cphy_0511 651219 - 652691 + | PAS/PAC sensor signal transduction histidine kinase TERM 751 653308 - 653322 + G 71 -4.3 -4.72486 | overlap 653296 GAATTGTAGGCTTCT TGCAA TGAGT TTGCA TTTTTCGGGTTTGTA Cphy_0512 652706 - 653812 + | response regulator receiver modulated metal dependent phosphohydrolase Cphy_0513 654074 - 655546 + | hypothetical protein TERM 752 656134 - 656148 + G 70 -8.6 -3.07013 | opp_overlap 656129 656131 656134, overlap 656136 TCCAAGGTAATAGCA CATGCT ATG AGCATG TCTGTTACAGCAGTG Cphy_0514 655666 - 656220 + | ECF subfamily RNA polymerase sigma-24 factor Cphy_0515 656236 - 656652 + | hypothetical protein TERM 753 656734 - 656695 - f 84 -11 -3.09004 | gap 1, opp_overlap 656695 656698, overlap 656692 656698 CCAGTGTGAAAATTA GAATTTCTTGAGCGACGTA CTT TA-GTCGTCCAAGAAATTC TTCTCACTTTGAAAA TERM 754 656695 - 656734 + F 87 -11 -3.47349 | gap 1, opp_overlap 656692 656695 656698, overlap 656698 CCAGTGTGAAAATTA GAATTTCTTGAGCGACGTA CTT TA-GTCGTCCAAGAAATTC TTCTCACTTTGAAAA Cphy_0516 656934 - 657851 + | malonyl CoA-acyl carrier protein transacylase Cphy_0517 657952 - 658692 + | 3-oxoacyl-(acyl-carrier-protein) reductase Cphy_0518 658744 - 659979 + | 3-oxoacyl-(acyl-carrier-protein) synthase 2 TERM 755 660342 - 660352 + G 70 -5.4 -4.37092 | AATGAAATTGAGTCT CCAT ATG ATGG TTTTGTAGAAGAAGT Cphy_0519 660000 - 660431 + | acetyl-CoA carboxylase, biotin carboxyl carrier protein TERM 756 660559 - 660544 - f 78 -6.8 -4.3953 | GCTAACGATAAGAAA TGACGC TAAA GCGCCA GAATAGAGGTTAAAA Cphy_0520 660574 - 660999 + | beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ TERM 757 661317 - 661329 + G 75 -5.5 -4.83169 | opp_overlap 661317 AGCGGAGGCAATTCA TCCGG GAT TCGGA TTTTTATCGGAAAAT TERM 758 661482 - 661461 - g 85 -10.2 -3.94002 | CATGATGGAAGCAAA GGTTCCAG TAGTAC CTGGAACC AAAGAGCCACTTCAC Cphy_0521 661081 - 662427 + | acetyl-CoA carboxylase, biotin carboxylase TERM 759 662436 - 662462 + F 75 -8.2 -3.71848 | opp_overlap 662441 AGAGTAAGTGGTATA TATAAGTTAAAC TAA GTTTAACTAATA TTGTTGATGGCGCAC TERM 760 662457 - 662441 - f 75 -8.1 -3.5947 | opp_overlap 662436 AAGTGGTATATATAA GTTAAAC TAA GTTTAAC TAATATTGTTGATGG Cphy_0522 662529 - 663455 + | acetyl-CoA carboxylase, carboxyl transferase, beta subunit Cphy_0523 663483 - 664382 + | acetyl-CoA carboxylase, carboxyl transferase, alpha subunit TERM 761 664423 - 664470 + F 88 -6.1 -5.50499 | opp_overlap 664427 AAATTTTGCTAGAGG TAAATAGGT-TCTATCATTATGA ATTG TC-TAATGATAAAAACCTATTTA TTTTTTTGCGTATGA TERM 762 665234 - 665220 - g 81 -8.6 -4.08216 | CTAGTGTTCTCAAAA GATGGA GAT TCCATC TGGCAGTGTAGAAAT Cphy_0524 664806 - 665345 + | rubrerythrin TERM 763 665373 - 665426 + T 83 -10.5 -3.04501 | opp_overlap 665380, overlap 665380 TAAGATTTAGAATTA TAGAGAACTACCCACATGCGAAAGT GTAT ACCTTTACATGCGGGTAGTTTTTTA TATTAGGAAATTACT TERM 764 665419 - 665380 - T 100 -13 -3.65671 | opp_overlap 665373 665380 TAGAATTATAGAGAA CTACCCACATGCGAAAGT GTAT ACCTTTACATGCGGGTAG TTTTTTATATTAGGA TERM 765 665380 - 665419 + T 100 -8.6 -5.47159 | opp_overlap 665380, overlap 665373 TAGAATTATAGAGAA CTACCCACATGCGAAAGT GTAT ACCTTTACATGCGGGTAG TTTTTTATATTAGGA Cphy_0525 667120 - 665552 - | two component AraC family transcriptional regulator TERM 766 666679 - 666668 - G 71 -4.4 -4.8667 | opp_overlap 666671 TATATCGGAGAAAAA CTGT TCTA ACAG AATGAATTTATTAGC Cphy_0526 668901 - 667117 - | histidine kinase internal region TERM 767 667276 - 667287 + g 90 -3 -6.04324 | opp_overlap 667276 AATTCCAATACCAGA GAAT TTAA ATTC TTTTTTGTTTTTTCC TERM 768 668917 - 668928 + H 78 -5.8 -4.74801 | GTTACCTCTTTTCTG GTGC TTAA GCAC TTTTTCATGACGTTG TERM 769 669231 - 669241 + G 81 -5.4 -5.16472 | GCAGCCATACTTTTT CTAG CAC CTAG TTTTTTGGGCTTTTT TERM 770 669378 - 669359 - g 76 -4.4 -5.14563 | TGTCGGATTAAAAAA CTTCAAAA TTAT TTTTAAAG ATCTCTGGTTTACGG Cphy_0527 669186 - 670076 + | binding-protein-dependent transport systems inner membrane component TERM 771 670132 - 670122 - g 78 -5.4 -5.03409 | TTAGAAAAAAAATAA TACG TAT CGTA GCAACCTTAGTTTTA Cphy_0528 670088 - 670933 + | binding-protein-dependent transport systems inner membrane component Cphy_0529 671066 - 672460 + | extracellular solute-binding protein Cphy_0530 672748 - 674523 + | Beta-galactosidase TERM 772 674540 - 674570 + F 100 -13.4 -5.28481 | opp_overlap 674540 ATAAATTAACAAAAA GTCGAAGCCGTTTG TGA TGAATGGCTTCGAC TTTTTTAATTCGCTC TERM 773 674570 - 674540 - f 100 -9.8 -5.25906 | opp_overlap 674540 ATAAATTAACAAAAA GTCGAAGCCGTT TGTGATG AATGGCTTCGAC TTTTTTAATTCGCTC TERM 774 674728 - 674718 - g 70 -5.4 -4.42088 | overlap 674707 AAAATGAGAAAACAA GGAT TTA ATCC GTATCTTCCATCATG Cphy_0531 674706 - 676121 + | Alpha-N-arabinofuranosidase Cphy_0532 676231 - 677979 + | peptidase S8 and S53 subtilisin kexin sedolisin TERM 775 678166 - 678127 - f 100 -11.8 -4.44797 | gap 1, opp_overlap 678127 TTAGTAATAGCAAAA GTGGATTCCAAAATCAT TCTATCT ATGATTT-GGAATCCAC TTTCTTTTGTCCCTT TERM 776 678127 - 678166 + F 100 -11.8 -4.79683 | gap 1, opp_overlap 678127 TTAGTAATAGCAAAA GTGGATTCCAAAATCAT TCTATCT ATGATTT-GGAATCCAC TTTCTTTTGTCCCTT Cphy_0533 678258 - 679514 + | TPR repeat-containing protein Cphy_0534 679533 - 680795 + | GTP-binding proten HflX TERM 777 680866 - 680920 + F 80 -5.2 -5.13722 | opp_overlap 680866 TGTGTTACGAAAAAA GTCCGTTAAGGAGC-GAAACATAACG AAAAC CGT-GTGTTTAAGCTACTTTACGGAC TTTTCTTTTGATACA TERM 778 680920 - 680866 - f 72 -3.7 -5.14563 | opp_overlap 680866 TGTGTTACGAAAAAA GTCCGTTAAGGAGC-GAAACATAACGA AAA CCGTG-TGTTTAAGCTACTTTACGGAC TTTTCTTTTGATACA Cphy_0535 681064 - 683466 + | anaerobic ribonucleoside triphosphate reductase TERM 779 683514 - 683565 + F 100 -18.6 -3.53761 | opp_overlap 683522 683526, overlap 683515 683522 683526 TGTTAGGATATGTTA GTTTAAAAGAAAGATACAATCATT TCAT AGTGATTGTATCTTTCTTTTAAAA TTTACGAGGAAATTG TERM 780 683515 - 683564 + F 100 -22.1 -2.72043 | opp_overlap 683522 683526, overlap 683514 683522 683526 GTTAGGATATGTTAG TTTAAAAGAAAGATACAATCATT TCAT AGTGATTGTATCTTTCTTTTAAA ATTTACGAGGAAATT TERM 781 683522 - 683557 + F 100 -15.8 -4.24002 | opp_overlap 683522 683526, overlap 683515 683514 683526 TATGTTAGTTTAAAA GAAAGATACAATCATT TCAT AGTGATTGTATCTTTC TTTTAAAATTTACGA TERM 782 683557 - 683522 - f 100 -13.6 -4.14243 | opp_overlap 683515 683514 683522 683526, overlap 683526 TATGTTAGTTTAAAA GAAAGATACAATCATT TCAT AGTGATTGTATCTTTC TTTTAAAATTTACGA TERM 783 683526 - 683553 + F 100 -10.8 -4.69559 | opp_overlap 683526 683522, overlap 683522 683515 683514 TTAGTTTAAAAGAAA GATACAATCATT TCAT AGTGATTGTATC TTTCTTTTAAAATTT TERM 784 683553 - 683526 - f 89 -8.6 -4.67048 | opp_overlap 683522 683515 683514 683526, overlap 683522 TTAGTTTAAAAGAAA GATACAATCATT TCAT AGTGATTGTATC TTTCTTTTAAAATTT Cphy_0536 683808 - 685622 + | diguanylate cyclase TERM 785 686222 - 686210 - g 76 -3.4 -5.27335 | CCGTCCAAATAAAAA TGCA GAACG TGCA AATAACAGTAATAAG Cphy_0537 685938 - 687008 + | branched-chain amino acid aminotransferase TERM 786 687033 - 687079 + F 100 -12.7 -5.626 | gap 1, opp_overlap 687033 687045 ACTTTTCAAAGGAAA GGCA-TTGGAAAATTAACCAGT ATGC GTTGGTTAATTTTTCAACTGCC TTTTTTTATGGAATG TERM 787 687079 - 687033 - f 85 -9.1 -4.06055 | gap 1, opp_overlap 687033, overlap 687045 ACTTTTCAAAGGAAA GGCA-TTGGAAAATTAACCA GTATGCGT TGGTTAATTTTTCAACTGCC TTTTTTTATGGAATG Cphy_0538 687149 - 688120 + | polysaccharide deacetylase TERM 788 688137 - 688195 + T 100 -12.9 -4.83615 | gap 2, opp_overlap 688137 GTAACGGTAGAAAAA GGGCTTTTGCGTATAAGATT-A-TGCTTT AAA ATAGCAGTTAATCTTACACGTAAAAGCCC TTTTTATAACAAGTG TERM 789 688195 - 688137 - T 100 -12.9 -4.87786 | gap 2, opp_overlap 688137 GTAACGGTAGAAAAA GGGCTTTTGCGTATAAGATT-A-TGCTTT AAA ATAGCAGTTAATCTTACACGTAAAAGCCC TTTTTATAACAAGTG Cphy_0539 689655 - 688261 - | peptidoglycan binding domain-containing protein TERM 790 689621 - 689609 - G 72 -7.7 -3.66178 | TTTTCTAACCCCAAA CCTTC ACG GAAGG TAGGGTAACGAAAAG Cphy_0540 690089 - 691351 + | carbamoyl phosphate synthase small subunit Cphy_0541 691351 - 694551 + | carbamoyl phosphate synthase large subunit TERM 791 694575 - 694547 - T 100 -16.3 -3.80018 | opp_overlap 694555 694573 TTGATATAGCAAGAA TTTAAGTAGCAAC GTA GTTGCTACTTAAA AAGAGGGGTAACTGT TERM 792 694573 - 694613 + T 100 -15 -3.09193 | gap 1, opp_overlap 694547 694578, overlap 694578 ACGTAGTTGCTACTT AAAAAGAGGGGTAACTGTG CATA CAC-GTTACCCCTCTTTTA TTCAGTACATCTAGT TERM 793 694608 - 694578 - T 100 -14.9 -4.65895 | gap 1, opp_overlap 694573 694578 GTTGCTACTTAAAAA GAGGGGTAACTGTG CATA CAC-GTTACCCCTC TTTTATTCAGTACAT TERM 794 694578 - 694608 + T 100 -14.9 -4.68384 | gap 1, opp_overlap 694578, overlap 694573 GTTGCTACTTAAAAA GAGGGGTAACTGTG CATA CAC-GTTACCCCTC TTTTATTCAGTACAT TERM 795 694679 - 694723 + T 87 -5.2 -5.67063 | overlap 694685 GTGTACTTTTCTAGT TTATGACAAGGAAAAGTTCG ATAAG TGTACTTTTTCTTGTTTTAA TTTTTTTCTACTAAA TERM 796 694685 - 694717 + T 82 -6.4 -4.96276 | overlap 694679 TTTTCTAGTTTATGA CAAGGAAAAGTTCG ATAAG TGTACTTTTTCTTG TTTTAATTTTTTTCT Cphy_0542 695130 - 694720 - | hypothetical protein TERM 797 695214 - 695200 - R 72 -7.2 -3.88698 | opp_overlap 695199, overlap 695198 GATTTACAGAAAATA TCTTTC AGA GAAAGA CTATTAGCTGAGATT TERM 798 695469 - 695506 + r 81 -4.2 -5.68489 | opp_overlap 695469 TAAAATAATAAAAAA GTGCTATCGTACAA AAAAATTCAC TAGTACGACAGCAC TTTTTTATTATTATG TERM 799 695506 - 695469 - R 100 -7.1 -5.77677 | opp_overlap 695469 TAAAATAATAAAAAA GTGCTATCGTACAAA AAAATTCA CTAGTACGACAGCAC TTTTTTATTATTATG Cphy_0543 698313 - 695551 - | magnesium-translocating P-type ATPase TERM 800 696035 - 696020 - G 71 -4.7 -4.62168 | overlap 696031 ATCCAAATCATAAAA CTTCC AACGGA GGAAG CATCCCACTTTCTTG Cphy_0544 699220 - 698717 - | winged helix family two component response transcriptional regulator Cphy_0545 699850 - 701943 + | 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein TERM 801 703433 - 703422 - g 76 -2.2 -5.55855 | TGTAAAAAAAGAAAA TCCA CAGA CGGA TACTAGTGTAAGAAA Cphy_0546 702304 - 704553 + | 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein Cphy_0547 704732 - 705256 + | adenine phosphoribosyltransferase TERM 802 705636 - 705620 - g 73 -6.6 -4.18762 | opp_overlap 705629, overlap 705602 705629 AAGTTCCATCCAAAA GAATGG AAATG CCATTC AAAAGAATGACATTG TERM 803 705648 - 705629 - g 71 -7.2 -3.92716 | opp_overlap 705629, overlap 705602 705620 CCAAAAGAATGGAAA TGCCATTC AAAA GAATGACA TTGACTTAATGCAGG Cphy_0548 705501 - 707942 + | (p)ppGpp synthetase I, SpoT/RelA TERM 804 708003 - 707987 - f 73 -8.1 -3.456 | GAACATAGGAATGAA TGCATAA ATG TTATGCA TAAATACTAAGCATT Cphy_0549 708053 - 708703 + | beta-lactamase domain-containing protein TERM 805 708850 - 708813 - g 73 -6.3 -4.39414 | opp_overlap 708818 708821, overlap 708818 708821 AATATCAAACAGAAA CGGAACAAGCGCTGTCT ACTG AGACAACGCTTGTCTTA CGACTATTCCTAGAC TERM 806 708818 - 708845 + G 88 -12.8 -3.06315 | opp_overlap 708813 708818 708821, overlap 708821 CAAACAGAAACGGAA CAAGCGCTGTCT ACTG AGACAACGCTTG TCTTACGACTATTCC TERM 807 708845 - 708818 - g 100 -15 -3.39488 | opp_overlap 708818 708821, overlap 708813 708821 CAAACAGAAACGGAA CAAGCGCTGTCT ACTG AGACAACGCTTG TCTTACGACTATTCC TERM 808 708821 - 708842 + G 78 -8.7 -3.67052 | opp_overlap 708818 708813 708821, overlap 708818 ACAGAAACGGAACAA GCGCTGTCT ACTG AGACAACGC TTGTCTTACGACTAT TERM 809 708842 - 708821 - g 88 -10.9 -3.80622 | opp_overlap 708821 708818, overlap 708818 708813 ACAGAAACGGAACAA GCGCTGTCT ACTG AGACAACGC TTGTCTTACGACTAT Cphy_0550 708704 - 710179 + | coproporphyrinogen III oxidase TERM 810 710719 - 710735 + G 82 -6.6 -5.03314 | GCAGCACTAGTGACG GAACGA GCTTA TCGTTC TTTTTTCGAAGTCGA Cphy_0551 710182 - 710904 + | metal dependent phosphohydrolase TERM 811 710992 - 710979 - f 86 -9.5 -3.97834 | GAATGTTACTACAAA GGCGC TATA GCGCC AGAATGGAGGATCAT TERM 812 711212 - 711197 - g 76 -6.2 -4.57073 | opp_overlap 711197, overlap 711209 GATGTTGTTCAAAAA GAAATG TACA CATTTC TTGATAAGAAAGATC Cphy_0552 711008 - 712261 + | histidyl-tRNA synthetase Cphy_0553 712412 - 714208 + | aspartyl-tRNA synthetase TERM 813 714393 - 714414 + G 71 -8.7 -3.26649 | opp_overlap 714396, overlap 714396 TTAATTGCATTCATA GGAGGGAGC TTAG GCTCTCTTC TTGGTATGAAGGTAT Cphy_0554 714315 - 714527 + | hypothetical protein Cphy_0555 714687 - 714887 + | cold-shock DNA-binding domain-containing protein TERM 814 714893 - 714877 - f 71 -8.1 -3.20901 | opp_overlap 714880, overlap 714880 AGGCTACTAACGTAA CAAGAAT ATA ATTCTTG TAAAATGTAGCAGAT TERM 815 714958 - 714935 - f 70 -8.2 -3.00022 | opp_overlap 714939 714956, overlap 714938 CTTATTCTAGACATA GAACCGTTTG ATAT CAAACGTTTC CATGATCGTGGAATT TERM 816 714939 - 714954 + F 73 -7.6 -3.69323 | opp_overlap 714938 714935 TTCTAGACATAGAAC CGTTTG ATAT CAAACG TTTCCATGATCGTGG TERM 817 715105 - 715062 - f 100 -12.8 -3.81027 | opp_overlap 715062, overlap 715066 TGTAACGAATCTAAA GAAAGAAAATAGAAGTTGTT TCAT AACAACTTTTGTTTTCTTTC TTTTTTTGTTTACCT TERM 818 715062 - 715105 + F 100 -17.2 -5.96894 | opp_overlap 715062 715066 TGTAACGAATCTAAA GAAAGAAAATAGAAGTTGTT TCAT AACAACTTTTGTTTTCTTTC TTTTTTTGTTTACCT TERM 819 715101 - 715066 - f 82 -7.8 -4.50761 | opp_overlap 715062, overlap 715062 ACGAATCTAAAGAAA GAAAATAGAAGTTGTT TCAT AACAACTTTTGTTTTC TTTCTTTTTTTGTTT TERM 820 715998 - 715987 - g 76 -5.8 -4.58663 | ATTATGTTTTAAAAA CCTC AGAA GAGG AAGCAGCTAAAGTTG Cphy_0556 715212 - 716273 + | aldose 1-epimerase TERM 821 716339 - 716281 - T 100 -17.1 -2.6976 | gap 1, opp_overlap 716282 716298 716300, overlap 716280 AAAAATAAAAAGGAG CTGTTGCCATTTTAAACTGCTCATTGTC TCTT GACAGGGAGT-GTTTAAAATGGCAACAG CCCTTTCTCTTTTTA Cphy_0557 717059 - 716430 - | uracil phosphoribosyltransferase TERM 822 716881 - 716901 + g 70 -8.3 -3.34222 | opp_overlap 716885, overlap 716885 TTAACAATAGCCTTA GTAAGTGGA GTC TCCACTTCC TTATCAGCTAATGGT TERM 823 717193 - 717176 - H 71 -8.3 -3.31461 | TATTCATGGTTAGAA CGCCCGC TATT GCGTGCG TCCCGACTTCAAATT TERM 824 717361 - 717340 - H 70 -4.5 -4.77896 | GAATGAATGGAAAAA CTATAACAT TGTG ATGTGATAG ATAATAAAAGTAAAG Cphy_0558 717390 - 718490 + | response regulator receiver protein TERM 825 718574 - 718604 + F 72 -4.7 -4.77173 | opp_overlap 718561 718574 AAGGGCAGAGGAGAA GCCCGGTAG AGGGGGAGGGTAA CTGCCGGGC TTTGTTTTATGAAAA Cphy_0559 718855 - 719307 + | hypothetical protein TERM 826 719461 - 719434 - f 77 -10 -2.7119 | opp_overlap 719434, overlap 719433 719436 ACGTAATAGGAGAAG GACTGTCATTAA ATCT TTTATGACAGTC TTTTTTTGATGAGTA TERM 827 719434 - 719461 + F 100 -10 -5.53991 | opp_overlap 719434 719433 719436 ACGTAATAGGAGAAG GACTGTCATTAA ATCT TTTATGACAGTC TTTTTTTGATGAGTA TERM 828 719842 - 719827 - f 71 -8.2 -3.24255 | overlap 719822 719820 GAAGAGAATATCTAA GGCGCC AAAA GACGCC GCCTAAGAAATTCTA Cphy_0560 719941 - 720960 + | periplasmic binding protein TERM 829 721001 - 720981 - f 71 -8.3 -3.25479 | opp_overlap 720981, overlap 720977 720974 720976 GGAGTAAATACGCAA CTTTGTACC TGT GGTTCAAAG TTTGCAGTTATGGAA TERM 830 720981 - 721001 + F 75 -8.3 -3.69354 | opp_overlap 720981 720977 720974 720976 GGAGTAAATACGCAA CTTTGTACC TGT GGTTCAAAG TTTGCAGTTATGGAA TERM 831 721392 - 721407 + G 70 -2.6 -5.22312 | GATAGCTACACTAAG TGGTAT GACG ATATCA TTTTTTGGTCTGGGT Cphy_0561 721033 - 722073 + | transport system permease protein Cphy_0562 722075 - 722869 + | ABC transporter related TERM 832 722897 - 722942 + F 82 -9.9 -3.20723 | opp_overlap 722902, overlap 722902 AATCAAAATTGAATT AAAAAGCAGGAGTTTTTGAAG TGGA CTTCAATGGCTTCTGCTTTTA TTCGATTGATAAAGA TERM 833 722902 - 722937 + F 93 -9.8 -4.72631 | opp_overlap 722902, overlap 722897 AAATTGAATTAAAAA GCAGGAGTTTTTGAAG TGGA CTTCAATGGCTTCTGC TTTTATTCGATTGAT TERM 834 722976 - 722961 - f 73 -4.6 -5.0065 | opp_overlap 722961, overlap 722956 722963 GATTGATAAAGAAAA GTTCGC GGAA GCGAGC TTTTTTGATTTCCCA TERM 835 722961 - 722976 + F 93 -6.8 -5.37593 | opp_overlap 722961 722956 722963 GATTGATAAAGAAAA GTTCGC GGAA GCGAGC TTTTTTGATTTCCCA Cphy_0563 723380 - 725623 + | S-layer domain-containing protein TERM 836 725817 - 725838 + F 100 -12.3 -4.33151 | opp_overlap 725817 725816 ATAGAACGTAGGAAG GGGAGTGTC TTAA GACGCTCCC TTTTAAATTATGATA TERM 837 725838 - 725817 - f 77 -10.1 -2.54173 | opp_overlap 725817, overlap 725816 ATAGAACGTAGGAAG GGGAGTGTC TTAA GACGCTCCC TTTTAAATTATGATA TERM 838 725885 - 725900 + F 74 -6.2 -4.52703 | GCTTCTTTTCTTATT TAAGCA TTTA TGCTTA TTTTATAGTAATTTA Cphy_0564 726147 - 726944 + | negative regulator of genetic competence sporulation and motility-like protein TERM 839 726951 - 726997 + T 74 -5.5 -4.8667 | gap 1, opp_overlap 726952, overlap 726953 AATGGCTAATATAAA T-GGCTGTGATACTTTTGATAT TTGA ATATTTAAAGTATTACAGCTTA TTTTTATGGGCTCTA TERM 840 726953 - 726994 + T 100 -11.9 -4.53475 | opp_overlap 726952, overlap 726951 TGGCTAATATAAATG GCTGTGATACTTTTGATAT TTGA ATATTTAAAGTATTACAGC TTATTTTTATGGGCT Cphy_0565 728317 - 727142 - | transposase IS204/IS1001/IS1096/IS1165 family protein TERM 841 728430 - 728381 - H 85 -8.2 -4.4891 | gap 1, opp_overlap 728389, overlap 728388 TTTATTATTATAAAA TAAAAAACGTTGGAGTA-GCGAA TTAAT TTCACATACCCCAACATTTATTA TAGAGCCTTTTTATG TERM 842 728423 - 728388 - H 100 -6.3 -5.86976 | gap 1, opp_overlap 728389, overlap 728381 TTATAAAATAAAAAA CGTTGGAGTA-GCGAA TTAAT TTCACATACCCCAACA TTTATTATAGAGCCT Cphy_0566 728797 - 730155 + | methyl-accepting chemotaxis sensory transducer TERM 843 730248 - 730288 + T 100 -18.7 -3.25459 | opp_overlap 730253, overlap 730253 AAAAGGAAGGTGATA CAAAATTAGAGGGTATCTT TCT AAGATACCCTCTAATTTTA TCTTGTGCCATTCGT TERM 844 730283 - 730253 - T 100 -18.6 -4.55118 | opp_overlap 730253 730248 GAAGGTGATACAAAA TTAGAGGGTATCTT TCT AAGATACCCTCTAA TTTTATCTTGTGCCA TERM 845 730253 - 730283 + T 100 -18.6 -4.73682 | opp_overlap 730253, overlap 730248 GAAGGTGATACAAAA TTAGAGGGTATCTT TCT AAGATACCCTCTAA TTTTATCTTGTGCCA Cphy_0567 731383 - 730286 - | hypothetical protein TERM 846 731554 - 731519 - R 87 -7.8 -4.77157 | gap 1, opp_overlap 731519 731521, overlap 731500 TCAAGCGACTAAAAA GATGTCCAACAA-AAAT ATC ATCCATTGTTGGACACC TTTTTTCATTTCAGC TERM 847 731519 - 731554 + r 76 -3.4 -5.37593 | opp_overlap 731500 731519, overlap 731521 TCAAGCGACTAAAAA GATGTCCAACAA AAATATCATCCA TTGTTGGACACC TTTTTTCATTTCAGC Cphy_0568 732623 - 731604 - | LacI family transcription regulator TERM 848 732964 - 732950 - H 90 -5.8 -5.67063 | CTCAGCAGAAAAAAA TTCTAT GAT ATAGAA GTAATCATTCAACGG Cphy_0569 733282 - 734193 + | hypothetical protein Cphy_0570 734224 - 735336 + | hypothetical protein Cphy_0571 735349 - 736362 + | UDP-glucose 4-epimerase Cphy_0572 737403 - 736501 - | AraC family transcriptional regulator Cphy_0573 737574 - 738956 + | extracellular solute-binding protein TERM 849 739021 - 738997 - f 88 -9.3 -4.23794 | opp_overlap 738997 GTAAGCGAATACAAA CGGTGAGCAGA ACT TTTACTCACCG TTTTTTTAAAACTGG TERM 850 738997 - 739021 + F 100 -9.3 -5.42259 | opp_overlap 738997 GTAAGCGAATACAAA CGGTGAGCAGA ACT TTTACTCACCG TTTTTTTAAAACTGG Cphy_0574 739199 - 740089 + | binding-protein-dependent transport systems inner membrane component TERM 851 740520 - 740534 + G 76 -4.2 -5.11063 | overlap 740521 AAAGCATTGAAAGGA TGGGGA TTC TCTCCG TTTTTCTTAAATAAT Cphy_0575 740100 - 740978 + | binding-protein-dependent transport systems inner membrane component Cphy_0576 740986 - 741162 + | hypothetical protein TERM 852 741369 - 741319 - f 71 -5.5 -4.71426 | gap 1, opp_overlap 741333 741336, overlap 741321 TCTTTAGTAATAAAA TATGCATCCAAGT-AGGTTGTGCC TTTG GGCACAGTCTTACTTGGATGTACC TCAAAATTCAAACAT TERM 853 741367 - 741321 - f 91 -10.3 -3.97413 | gap 1, opp_overlap 741333 741336, overlap 741319 TTTAGTAATAAAATA TGCATCCAAGT-AGGTTGTGCC TTTG GGCACAGTCTTACTTGGATGTA CCTCAAAATTCAAAC TERM 854 741333 - 741354 + F 76 -8.7 -3.39142 | opp_overlap 741321 741319, overlap 741336 ATATGCATCCAAGTA GGTTGTGCC TTTG GGCACAGTC TTACTTGGATGTACC TERM 855 741336 - 741351 + F 71 -9 -2.55337 | opp_overlap 741321 741319, overlap 741333 TGCATCCAAGTAGGT TGTGCC TTTG GGCACA GTCTTACTTGGATGT TERM 856 742561 - 742574 + G 73 -6.7 -4.22554 | opp_overlap 742561 GTTAAGTATACCGAA GGAAG ATTT CTTCC TTATTTCTTCCCTGA TERM 857 743548 - 743532 - g 74 -3.7 -5.08824 | opp_overlap 743543 TGCTTATGTAAAAAA CAACAAA TAT TGTGTTG TAAATAACACTTATG Cphy_0577 741481 - 743652 + | hypothetical protein TERM 858 743710 - 743671 - T 91 -8 -5.12617 | opp_overlap 743673, overlap 743673 CAATTAGGTAAAAAA GAGCTTTTGTAGTATGGA GGAA TCTTTACTACAAAAGCTT TTTTAAGTTTTAAAT TERM 859 743673 - 743708 + T 100 -12.8 -5.2696 | opp_overlap 743671 743673 ATTAGGTAAAAAAGA GCTTTTGTAGTATGGA GGAA TCTTTACTACAAAAGC TTTTTTAAGTTTTAA TERM 860 743708 - 743673 - T 95 -10.6 -4.1821 | opp_overlap 743673, overlap 743671 ATTAGGTAAAAAAGA GCTTTTGTAGTATGGA GGAA TCTTTACTACAAAAGC TTTTTTAAGTTTTAA Cphy_0578 745598 - 743784 - | histidine kinase internal region TERM 861 745504 - 745493 - G 70 -3 -5.20606 | AAATAGTAATAAAAA TAGT TGGA ACTA AAGCAAGAAGAAGAT Cphy_0579 747219 - 745624 - | two component AraC family transcriptional regulator TERM 862 746550 - 746563 + g 75 -5.3 -4.7373 | opp_overlap 746550 746548 CGTAAATATGTAATA CGATT AGTG AATCG TTTTTAATAAAATGG TERM 863 746856 - 746871 + g 78 -7.6 -4.28548 | opp_overlap 746858, overlap 746861 CCTGATGTTGTAGGA CAGTCT GGAT AGACTG TTTTAGTGCATCCAT TERM 864 747843 - 747830 - g 75 -5.3 -4.81357 | ACATGAGAAAATAAA GAATG GTAT CATTC AGTGGAAGCAAATGA Cphy_0580 747501 - 749027 + | ABC transporter related TERM 865 749067 - 749052 - g 78 -4 -5.42259 | gap 1, opp_overlap 749059 CTATGTGGAAAAAAA TCAC-CG GCT CGCGTGA GGTGAGTTTGGTTTT Cphy_0581 749024 - 750025 + | monosaccharide-transporting ATPase Cphy_0582 750028 - 751044 + | monosaccharide-transporting ATPase TERM 866 751246 - 751217 - g 70 -2.7 -5.09521 | GTAACAAAGCAAAAA CCCCTACAACTGC TGCA ACAACTGGTGGGG ACGGTTATGCAACAA Cphy_0583 751114 - 752217 + | putative sugar ABC transporter, substrate-binding protein TERM 867 752370 - 752351 - f 87 -10 -3.92625 | opp_overlap 752351 CATATGGGAAGGAAA GGGTTGCC AAAA AGCAACCC TTTTCTACTAATAGA TERM 868 752351 - 752370 + F 89 -9.3 -4.4891 | opp_overlap 752351 CATATGGGAAGGAAA GGGTTGC CAAAAA GCAACCC TTTTCTACTAATAGA Cphy_0584 752520 - 754019 + | L-arabinose isomerase TERM 869 754066 - 754110 + F 100 -13.9 -2.50035 | opp_overlap 754066 754075, overlap 754075 CTTTTTTGCATCAAA GGTATGAAAGCTATCAATGGA TTT TTCATTGGTAGCTTTTATAGC GTATATTAATATATA TERM 870 754110 - 754066 - f 70 -7.3 -3.72576 | opp_overlap 754066 754075, overlap 754075 CTTTTTTGCATCAAA GGTATGAAAGCTATCAATGGA TTT TTCATTGGTAGCTTTTATAGC GTATATTAATATATA TERM 871 754075 - 754101 + F 100 -11 -4.4195 | opp_overlap 754075 754066, overlap 754066 ATCAAAGGTATGAAA GCTATCAATGGA TTT TTCATTGGTAGC TTTTATAGCGTATAT TERM 872 755643 - 755617 - gf 73 -8.2 -3.45571 | opp_overlap 755616 TCTTCCAAATACCAA CAGATAATAAAA CAA TATTATTATCTG AATATTCTTTCCATA Cphy_0585 754629 - 756218 + | hypothetical protein TERM 873 756887 - 756876 - gf 70 -3 -5.10665 | ATTGAACAAACAAAA TGAT CTAG ATCA AACAAAAATTTCATT TERM 874 756988 - 756978 - gf 78 -5.4 -5.06472 | AGATAAACAAGAAAA GTTG GAA CAAC TTGAGCAAGTATTGA Cphy_0586 756187 - 758133 + | hypothetical protein Cphy_0587 758138 - 759193 + | hypothetical protein Cphy_0588 759190 - 764469 + | DEAD/DEAH box helicase domain-containing protein Cphy_0589 765034 - 765657 + | cell wall anchor domain-containing protein TERM 875 765744 - 765701 - f 71 -8.2 -3.21824 | opp_overlap 765702, overlap 765699 765697 TAATTAAAAATCACA GTGCACCTCAAGTGTTAGAA AAAA TTCTAGCATATGAGGTGCAT TTTTTTACAAGCAAG TERM 876 765702 - 765743 + F 100 -16.1 -5.40072 | opp_overlap 765701 765699 765697 AATTAAAAATCACAG TGCACCTCAAGTGTTAGAA AAAA TTCTAGCATATGAGGTGCA TTTTTTTACAAGCAA Cphy_0590 765825 - 766865 + | LacI family transcription regulator Cphy_0591 767507 - 769447 + | hypothetical protein Cphy_0592 769518 - 770888 + | extracellular solute-binding protein Cphy_0593 771053 - 771979 + | binding-protein-dependent transport systems inner membrane component Cphy_0594 771976 - 772857 + | binding-protein-dependent transport systems inner membrane component TERM 877 772899 - 772862 - f 100 -7.9 -5.59502 | gap 1, opp_overlap 772865, overlap 772865 TAAAAAACTAAAAAA GAAGGAATC-CAATCAAG AGT CTTGATAGGGATTCCTTT TTTTTATGGAGAATA TERM 878 772865 - 772896 + F 100 -9.6 -5.93809 | gap 1, opp_overlap 772862 772865 AAAACTAAAAAAGAA GGAATC-CAATCAAG AGT CTTGATAGGGATTCC TTTTTTTTATGGAGA TERM 879 772896 - 772865 - f 100 -9.6 -4.78121 | gap 1, opp_overlap 772865, overlap 772862 AAAACTAAAAAAGAA GGAATC-CAATCAAG AGT CTTGATAGGGATTCC TTTTTTTTATGGAGA Cphy_0595 773196 - 774245 + | LacI family transcription regulator Cphy_0596 774242 - 775282 + | hypothetical protein TERM 880 775341 - 775303 - f 100 -14.2 -2.92267 | opp_overlap 775304 775309, overlap 775309 CCTAGAAAGTAACCA GTAAAAGTTAGGTACTTT AAA AAAGCACCTAACTTTTAT TAATTGAGAAAACTT TERM 881 775304 - 775340 + F 100 -15.5 -3.33815 | opp_overlap 775303 775309, overlap 775309 CTAGAAAGTAACCAG TAAAAGTTAGGTACTTT AAA AAAGCACCTAACTTTTA TTAATTGAGAAAACT TERM 882 775309 - 775335 + F 100 -11 -4.78572 | opp_overlap 775303 775309, overlap 775304 AAGTAACCAGTAAAA GTTAGGTACTTT AAA AAAGCACCTAAC TTTTATTAATTGAGA TERM 883 775335 - 775309 - f 100 -13.2 -4.37013 | opp_overlap 775309 775304, overlap 775303 AAGTAACCAGTAAAA GTTAGGTACTTT AAA AAAGCACCTAAC TTTTATTAATTGAGA Cphy_0597 775387 - 775866 + | hypothetical protein TERM 884 775954 - 775968 + G 73 -8.6 -3.46659 | CTGGTTTTGTTTGTT TCCACA CTT TGTGGA TTAGTTATGGGTATG Cphy_0598 775882 - 777390 + | hypothetical protein Cphy_0599 777384 - 778535 + | oxidoreductase domain-containing protein Cphy_0600 778554 - 779642 + | oxidoreductase domain-containing protein TERM 885 779763 - 779800 + F 100 -13.7 -4.83615 | gap 1, opp_overlap 779763 TAAAGAACTAAAAAA GAAGGAATC-CAATCAAG AGT CTTGATAGGGATTCCTTC TTTTTATGGAGAATA TERM 886 779800 - 779763 - f 100 -13.7 -5.4148 | gap 1, opp_overlap 779763 TAAAGAACTAAAAAA GAAGGAATC-CAATCAAG AGT CTTGATAGGGATTCCTTC TTTTTATGGAGAATA TERM 887 780106 - 780078 - g 76 -2.4 -5.4492 | CAGACAGAGAAAAAA CAAGTTGCATTA TCCTT TGATGCAGCCTG GGGGAATGAAGATAC Cphy_0601 779904 - 780683 + | polysaccharide deacetylase TERM 888 780880 - 780843 - f 100 -20.9 -5.9873 | opp_overlap 780843 GTACTAGAAAAAAAA GCTGCTGTCAAACTAAT GTTG ATTAGTCTGACAGCAGC TTTTTTGTATTTCGT TERM 889 780843 - 780880 + F 100 -18.7 -5.5762 | opp_overlap 780843 GTACTAGAAAAAAAA GCTGCTGTCAAACTAAT GTTG ATTAGTCTGACAGCAGC TTTTTTGTATTTCGT TERM 890 780992 - 781006 + F 80 -6.4 -4.74504 | opp_overlap 780992 CAGGAAACAATCTAA GTAGCA TTG TGCTGC TTTTTGAATTGGAAT Cphy_0602 781036 - 781242 + | hypothetical protein Cphy_0603 781259 - 784795 + | pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing protein TERM 891 784852 - 784881 + F 100 -9.5 -4.75404 | gap 1, opp_overlap 784856, overlap 784856 TCGTTTATTAATTTT GAAAGCAGATTGCA ATA TG-AGTCTGCTTTC TTTTTAGTCACATTT TERM 892 784856 - 784877 + F 70 -4.5 -4.91852 | gap 1, opp_overlap 784856, overlap 784852 TTATTAATTTTGAAA GCAGATTGCA ATA TG-AGTCTGC TTTCTTTTTAGTCAC TERM 893 786631 - 786597 - g 71 -8.6 -3.26471 | overlap 786599 GCATCGGTAGAGGAA CAGGCTGCAGCAAT GGACCAG ATTGCTGAAGCCAG TAAAGTATTATCCCA TERM 894 786629 - 786599 - g 77 -9.8 -3.1978 | overlap 786597 ATCGGTAGAGGAACA GGCTGCAGCAAT GGACCAG ATTGCTGAAGCC AGTAAAGTATTATCC Cphy_0604 785091 - 786692 + | methyl-accepting chemotaxis sensory transducer TERM 895 786741 - 786775 + F 79 -6.6 -4.57073 | gap 1, opp_overlap 786752, overlap 786745 AAACTGAAGGCTTTT GAAGGCAGATATCAC ATAATA GTGA-GTCTGCTTTC TTTTTAGAAAAGCTA Cphy_0605 787055 - 787765 + | methyl-accepting chemotaxis sensory transducer TERM 896 787900 - 787890 - g 70 -5.4 -4.43173 | AAAAATAATTTAAAA CCTA AGG TAGG AGTTGTGTTAGGTTC Cphy_0606 787824 - 788648 + | inosine guanosine and xanthosine phosphorylase family protein TERM 897 788662 - 788692 + F 100 -11.3 -5.0538 | gap 1 AATAGAATTAAGTTT GAAGGCAG-TTCAC AATA GTGAGTCTGCCTTC TTTTTTAAAATGCAC Cphy_0607 788898 - 790718 + | glycoside hydrolase family protein TERM 898 790936 - 790920 - T 100 -10.1 -5.39721 | opp_overlap 790920 CTATTATACAAAAAA GCGAACC ATA GGCTCGC TTTTTTTGTGGCTCT TERM 899 790920 - 790936 + T 100 -7.9 -5.65177 | opp_overlap 790920 CTATTATACAAAAAA GCGAACC ATA GGCTCGC TTTTTTTGTGGCTCT Cphy_0608 792257 - 791082 - | transposase IS204/IS1001/IS1096/IS1165 family protein TERM 900 792370 - 792321 - R 85 -8.2 -4.4891 | gap 1, opp_overlap 792329, overlap 792328 TTTATTATTATAAAA TAAAAAACGTTGGAGTA-GCGAA TTAAT TTCACATACCCCAACATTTATTA TAGAGCCTTTTTTGT TERM 901 792363 - 792328 - R 100 -6.3 -5.86976 | gap 1, opp_overlap 792329, overlap 792321 TTATAAAATAAAAAA CGTTGGAGTA-GCGAA TTAAT TTCACATACCCCAACA TTTATTATAGAGCCT Cphy_0609 794711 - 792393 - | hypothetical protein TERM 902 793489 - 793503 + g 73 -5.8 -4.48072 | TCAGTAATACTATTC TTTAAC TGT GTTAAA TTTTGTGCTCCATCT TERM 903 794670 - 794688 + g 71 -4.6 -4.87803 | opp_overlap 794673, overlap 794673 TACACCAATTAAAAT TAAGTATG GGA CATACTTC TTTTGTTTAAAAATA TERM 904 794673 - 794685 + g 76 -6.3 -4.54026 | opp_overlap 794673, overlap 794670 ACCAATTAAAATTAA GTATG GGA CATAC TTCTTTTGTTTAAAA Cphy_0610 795758 - 795189 - | TetR family transcriptional regulator TERM 905 795349 - 795339 - G 70 -2.6 -5.14563 | overlap 795341 TCCGTTAGCAAAAAA TTTT GCT AAAA ACAATTTATCACTTT Cphy_0611 796122 - 796259 + | hypothetical protein TERM 906 796368 - 796325 - T 100 -14.1 -3.1544 | opp_overlap 796325 TTATATTAGACTCAA TAGACTCTCCCTACCTGAA AAAGTG CTTAGGTAAGGAGAGTCTA TTTTTTATTCCTTTT TERM 907 796325 - 796368 + T 100 -13.4 -5.61689 | opp_overlap 796325 TTATATTAGACTCAA TAGACTCTCCCTACCTGA AAAAGTGC TTAGGTAAGGAGAGTCTA TTTTTTATTCCTTTT Cphy_0612 797663 - 796578 - | VanZ family protein Cphy_0613 798037 - 798591 + | methyl-accepting chemotaxis sensory transducer TERM 908 798643 - 798679 + F 93 -6.1 -5.70829 | gap 1 AGCCCTTAAGAATGA GCAAAGAAATTAGGCA TGTGAT TGTCTG-TTTCTTTGC TTTTTTTGTAATATT Cphy_0614 798942 - 800231 + | methyl-accepting chemotaxis sensory transducer TERM 909 800738 - 800722 - g 72 -8.1 -3.6392 | CATACTAAAGTATAA TGGTAAT ATA ATTACCA CCGGCTTTAAAGAGA Cphy_0615 800570 - 801004 + | hypothetical protein TERM 910 801069 - 801057 - g 83 -2 -5.95449 | AAATAAAATAAAAAA TACA AAAAA TGTA ATAAAAAACAAAATA Cphy_0616 801007 - 801984 + | hypothetical protein TERM 911 802288 - 802256 - T 71 -2.2 -5.33866 | opp_overlap 802256 802251 802245, overlap 802245 CAAATCCACAAAAAA GAAAGCAGATATC-TC TAA GATGATA-CTGTTTTC TTTTCTTGGATAATC Cphy_0617 804156 - 802351 - | signal transduction histidine kinase, LytS Cphy_0618 804922 - 804146 - | two component AraC family transcriptional regulator Cphy_0619 805147 - 806538 + | extracellular solute-binding protein TERM 912 806553 - 806592 + F 100 -15.3 -3.03006 | opp_overlap 806568 ATTCTTTAATTTCAG TGGGGTTGTCGTAAA TAAAAAATGT TTTACGACAACCCCA TCTGTCTAGATTCAT Cphy_0620 806729 - 807646 + | binding-protein-dependent transport systems inner membrane component Cphy_0621 807636 - 808505 + | binding-protein-dependent transport systems inner membrane component TERM 913 808579 - 808605 + F 88 -7.3 -5.04601 | opp_overlap 808581 808595 TTTGTTAAATGCAAT GAGCGAGGT AAATGAAGA GCCTCGCTC TTTTTGCTTTGTCAA Cphy_0622 808851 - 809189 + | DNA mismatch repair protein MutS domain-containing protein Cphy_0623 809475 - 810185 + | hypothetical protein TERM 914 810227 - 810259 + F 95 -10.7 -4.46112 | opp_overlap 810227 810226 TAATGTTAGTAAAAG GCGGACGTATTCAAT TTA ATTTGATACGTTCGC TTTCTTTACATCCAA TERM 915 810551 - 810568 + G 74 -9.9 -2.73364 | overlap 810554 AACTAGTTGCACTCG CAATGGC TGTT GCCATTG TCATTCCAATGAACG TERM 916 811545 - 811524 - g 71 -5.2 -4.58303 | CCAAAGACTAGAAAA CTACATCA AAAATG TGATGCAG CTGATCTCATCAACC TERM 917 811796 - 811835 + G 71 -9.6 -2.51642 | gap 1, opp_overlap 811796 811811, overlap 811795 AGGATAGAAAGAGTA CCTTTATCTTTAATATCCT GAA AGGAT-TAAAAGATAAGGG CTTAGTGGATGGTAT Cphy_0624 810523 - 812793 + | endo-1,4-beta-xylanase TERM 918 812812 - 812851 + T 100 -16.6 -4.11216 | opp_overlap 812806 ATAATTTAACTTCAT CAGGTAAGTACCACGCTT CTGT AAGCTGGGTACTTACCTG TTTTAAAACTCCACA TERM 919 812974 - 812933 - T 100 -14.7 -4.22338 | opp_overlap 812933 ATGATAATTCTAAAA GCTATCAAGGTTACACT TTTCTTTC AGAGTAACCTTGATAGC TTTTTAATTTAGGAT TERM 920 812933 - 812974 + T 100 -14.7 -4.99134 | opp_overlap 812933 ATGATAATTCTAAAA GCTATCAAGGTTACACT TTTCTTTC AGAGTAACCTTGATAGC TTTTTAATTTAGGAT Cphy_0625 813778 - 813011 - | putative esterase Cphy_0626 814512 - 813769 - | hypothetical protein TERM 921 814050 - 814066 + g 76 -5.9 -4.57516 | overlap 814051 GATCACCTAGCCACT TGGAAAT ATC ATTTCCG TTTTCATTTACATAT Cphy_0627 814818 - 815546 + | phosphotransferase domain-containing protein TERM 922 815603 - 815634 + F 100 -10.3 -5.84381 | opp_overlap 815605 TTAATAATGTTATTA GACAAAGGCGTCT TGGGAT AGATGCTTTTGTC TTTTTTTATTCGTAG TERM 923 816158 - 816180 + G 70 -3.4 -4.946 | overlap 816159 ATCTTGGTTACACAT TTCACGTTGG TCC CGAATGTGAG TTTTTCCTCTTTGAT Cphy_0628 815782 - 817113 + | glutamine synthetase, type I Cphy_0629 817143 - 817685 + | response regulator receiver/ANTAR domain-containing protein Cphy_0630 817872 - 818786 + | diaminopimelate epimerase TERM 924 818845 - 818830 - f 88 -9 -4.19506 | opp_overlap 818827 AGCGTAAGCGGAAAA CTTGCC TGTA GGCAAG TGGTAATATCCGCTT Cphy_0631 818903 - 820117 + | L,L-diaminopimelate aminotransferase TERM 925 820257 - 820217 - T 100 -24.3 -4.75356 | opp_overlap 820219, overlap 820219 AAATAGATTTAAAAA CAGTAATGGAGCGGGATTC CAA GAATCCCGCTCCATTACTT TATAAAGAGCTATTA TERM 926 820219 - 820255 + T 100 -26.9 -3.86524 | opp_overlap 820217 820219 ATAGATTTAAAAACA GTAATGGAGCGGGATTC CAA GAATCCCGCTCCATTAC TTTATAAAGAGCTAT TERM 927 820255 - 820219 - T 100 -26.9 -3.97602 | opp_overlap 820219, overlap 820217 ATAGATTTAAAAACA GTAATGGAGCGGGATTC CAA GAATCCCGCTCCATTAC TTTATAAAGAGCTAT Cphy_0632 822993 - 820360 - | ATPase, P-type (transporting), HAD superfamily, subfamily IC TERM 928 823300 - 823334 + H 100 -13.2 -2.99449 | opp_overlap 823300, overlap 823295 TATGCAACAAAAAAA CTCATGTATAACTT AAAATAA AAGTTATACATGAG TCTCATTCTCTAAGG TERM 929 823334 - 823300 - H 100 -13.2 -5.8187 | opp_overlap 823300 823295 TATGCAACAAAAAAA CTCATGTATAACTT AAAATAA AAGTTATACATGAG TCTCATTCTCTAAGG TERM 930 823455 - 823471 + H 78 -9.5 -3.32521 | AATTTAATTTTGGTA CAAATGG TAA CCATTTG TTATAGACCTATCAT TERM 931 824031 - 824043 + G 73 -5.5 -4.5954 | TTACAGGGATATTCT GATCC AAC GGGTC TTTTATATACTGTCA Cphy_0633 823692 - 824708 + | peptidase U61 LD-carboxypeptidase A Cphy_0634 825182 - 825424 + | 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein TERM 932 825729 - 825715 - g 71 -5 -4.62984 | GGAGGAGAGAGAAAA TTCCGT ACT ACGAAA GCTAAAAAAAGCTAG Cphy_0635 825614 - 828028 + | sulfatase TERM 933 828371 - 828419 + F 100 -17 -5.72622 | gap 1 GTACATAGAATTCTC GTCCCGGAATAATTGTATCGTGA TTTT TCACGA-GCATTTGTTCCGGGAC TTTTTTATTTATAAG Cphy_0636 828528 - 829865 + | aspartyl-tRNA synthetase Cphy_0637 829957 - 830244 + | glutamyl-tRNA(Gln) amidotransferase, C subunit TERM 934 830359 - 830348 - g 71 -4.4 -4.74052 | ATTAAACAAAAAGAA CTCT CAGT AGAG GAAGCAGTGAAAGCA Cphy_0638 830291 - 831775 + | glutamyl-tRNA(Gln) amidotransferase, A subunit TERM 935 831870 - 831897 + F 90 -10 -4.1023 | opp_overlap 831866 CGCGAATAGGAGTTA GTGTGAAAATAG AAAG CAATTTTCACAC TTCTTATTTAAGATT TERM 936 831932 - 831911 - f 83 -10.3 -3.08798 | opp_overlap 831916, overlap 831916 ACTTCTTATTTAAGA TTCAATCTG CGAA CAGATTGAA TATGCATGGGTGTTA Cphy_0639 831997 - 833433 + | glutamyl-tRNA(Gln) amidotransferase, B subunit Cphy_0640 833739 - 834131 + | type IV pilus assembly PilZ TERM 937 834226 - 834170 - T 91 -12.1 -3.41878 | gap 1, opp_overlap 834170, overlap 834182 GTTTGGAATGTATAA TAGCATAGAAAA-TCCTATGAAAAGT GCTATA ACTTTTGAAAGGAATTTTCTATGCTA TTTTTGTTTAGTGAT TERM 938 834170 - 834226 + T 100 -12.1 -5.34309 | gap 1, opp_overlap 834170 834182 GTTTGGAATGTATAA TAGCATAGAAAA-TCCTATGAAAAGT GCTATA ACTTTTGAAAGGAATTTTCTATGCTA TTTTTGTTTAGTGAT Cphy_0641 835263 - 834256 - | phosphoesterase domain-containing protein Cphy_0642 835676 - 835392 - | membrane protein TERM 939 835920 - 835905 - H 71 -7.6 -3.54741 | opp_overlap 835915 TACGACTGGCGGAAA CTGTAG GAGA CTACAG GTGGGGATAACCCAC TERM 940 836571 - 836558 - g 75 -5.3 -4.74161 | opp_overlap 836558 836563 836564 AAAGAAGAAAAAGAA GTATC TTTA GATAC TAAGTTTTATTTGAT Cphy_0643 836075 - 837631 + | bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase TERM 941 837641 - 837676 + T 100 -15.8 -4.49344 | gap 1, opp_overlap 837641 CATTAACACTAAAAA GTGGGTAAT-CAAAACA ATT TGTTTTGAATTACCCAC TTTTCTCATCCATTT TERM 942 837676 - 837641 - T 100 -15.8 -4.89233 | gap 1, opp_overlap 837641 CATTAACACTAAAAA GTGGGTAAT-CAAAACA ATT TGTTTTGAATTACCCAC TTTTCTCATCCATTT Cphy_0644 837949 - 837749 - | cold-shock DNA-binding domain-containing protein TERM 943 838212 - 838194 - H 72 -7.4 -3.84996 | opp_overlap 838189, overlap 838183 AATACACAAGTGAAA CACGAGTG AAT CATTCGTG ATACATAGTTGTAAT TERM 944 840041 - 840053 + G 78 -6.3 -4.72272 | GAAAACTTACCAGTT CTTCA CCA TGAAG TTTTTACTAACGGAA Cphy_0645 838382 - 841360 + | peptidase M16C associated domain-containing protein TERM 945 841369 - 841383 + F 77 -10 -2.71011 | opp_overlap 841378 ATTTTAACCTCATCA GGCAAG GAA CTTGCC TACTTCAGCAGGAGT TERM 946 841420 - 841378 - f 100 -14.3 -3.38316 | gap 1, opp_overlap 841369 841413 TCATCAGGCAAGGAA CTTGCCTACTTCAGCAGGAG TAGG CTCCTGCTGAAGT-GCCACG TAGTGGCAATGATGT TERM 947 841528 - 841492 - f 74 -7.5 -3.91028 | gap 1, opp_overlap 841496 841499, overlap 841493 841497 841499 AACGTAAATCAATAA TGAGA-TATAGTGGCA GTATTT TGCCACTATACTCTCT AAAATAGGAACAGGA TERM 948 841527 - 841493 - f 83 -11 -2.93532 | gap 1, opp_overlap 841496 841499, overlap 841492 841497 841499 ACGTAAATCAATAAT GAGA-TATAGTGGCA GTATTT TGCCACTATACTCTC TAAAATAGGAACAGG TERM 949 841522 - 841497 - f 83 -10.6 -3.04877 | opp_overlap 841496 841499, overlap 841493 841492 841499 AAATCAATAATGAGA TATAGTGGCA GTATTT TGCCACTATA CTCTCTAAAATAGGA TERM 950 841499 - 841520 + F 74 -9.5 -2.69799 | opp_overlap 841497 841493 841492 841499, overlap 841496 ATCAATAATGAGATA TAGTGGCAG TATT TTGCCACTA TACTCTCTAAAATAG TERM 951 841520 - 841499 - f 72 -8.8 -3.06573 | opp_overlap 841499 841496, overlap 841497 841493 841492 ATCAATAATGAGATA TAGTGGCA GTATTT TGCCACTA TACTCTCTAAAATAG Cphy_0646 841551 - 842468 + | GTP-binding protein Era TERM 952 842657 - 842640 - f 81 -9.9 -3.08966 | opp_overlap 842639 842638 842647, overlap 842630 842642 GGAAATGTTACTTAA CATGGAG GATT CTCCATG GATCTTTTGAGCTCA Cphy_0647 842815 - 843555 + | DNA repair protein RecO TERM 953 844417 - 844405 - g 76 -6.3 -4.70879 | CGTAAACTTTAAAAA TGTTC AGA GAACA TCCAGAAAGAAGATT TERM 954 844666 - 844652 - g 74 -5 -4.77036 | opp_overlap 844652 CGTGATCATGAAAAA GAAGAA TTA TCCTTC TATTCCAAAGCAACA Cphy_0648 843851 - 845239 + | glycyl-tRNA synthetase TERM 955 845250 - 845306 + T 100 -13.4 -4.70772 | gap 1, opp_overlap 845253, overlap 845253 TTTAATATATAAGAA AAAGGGCAAATGAAAAACCA-TTCGAA ATTA TTCTAAATGGTATTTCATTTGCCCTTA TTTTATTGGCTCTAT TERM 956 845253 - 845303 + T 100 -15.1 -4.44914 | gap 1, opp_overlap 845253, overlap 845250 AATATATAAGAAAAA GGGCAAATGAAAAACCA-TTCGAA ATTA TTCTAAATGGTATTTCATTTGCCC TTATTTTATTGGCTC TERM 957 845303 - 845253 - T 100 -17.3 -5.28561 | gap 1, opp_overlap 845253 845250 AATATATAAGAAAAA GGGCAAATGAAAAACCATTC-GAA ATTA TTCTAAATGGTATTTCATTTGCCC TTATTTTATTGGCTC Cphy_0649 846625 - 845450 - | transposase IS204/IS1001/IS1096/IS1165 family protein TERM 958 846738 - 846689 - R 85 -8.2 -4.4891 | gap 1, opp_overlap 846697, overlap 846696 TTTATTATTATAAAA TAAAAAACGTTGGAGTA-GCGAA TTAAT TTCACATACCCCAACATTTATTA TAGAGCCATTTTATT TERM 959 846731 - 846696 - R 100 -6.3 -5.86976 | gap 1, opp_overlap 846697, overlap 846689 TTATAAAATAAAAAA CGTTGGAGTA-GCGAA TTAAT TTCACATACCCCAACA TTTATTATAGAGCCA Cphy_0650 847411 - 846752 - | GDSL family lipase TERM 960 847768 - 847790 + H 81 -4.2 -5.626 | TAAATAAGTTCATTT GTAAGATTTT TGT AAGTTCTTAC TTTTTTTATAAAATC Cphy_0651 848249 - 850870 + | pyruvate phosphate dikinase TERM 961 850906 - 850884 - T 77 -8.5 -3.69564 | gap 1, overlap 850881 850885 AGTAACAAAGTATAA GCC-TGTGCT GCTT AGCACAAGGC AGCATTAAACAATAA TERM 962 850904 - 850885 - T 71 -8.6 -2.80654 | overlap 850881 850884 GTAACAAAGTATAAG CCTGTGCT GCTT AGCACAAG GCAGCATTAAACAAT TERM 963 850943 - 850961 + T 100 -8.1 -5.59357 | opp_overlap 850943 GTAATATATTGAAAA GCAGTCC TTTAT GGGCTGC TTTTTTTCATCTAAT Cphy_0652 851158 - 850982 - | hypothetical protein Cphy_0653 851671 - 852957 + | citrate transporter TERM 964 852978 - 853008 + F 74 -4.1 -5.30155 | gap 2, opp_overlap 852978 852979, overlap 852971 CTTATTAACAAGAGA GCTGGTCTTGACC AGATAAA GG-CA-GACCAGC TTTTTTGATTAATAA TERM 965 853592 - 853582 - g 86 -6.8 -5.10029 | AGGAATCTGAAAAAA TGGG AAT CCCA TGTACCGTTGCATCA TERM 966 853698 - 853726 + G 79 -10.3 -3.1978 | opp_overlap 853697 853698, overlap 853696 853699 CTTGATACCGCAAAT TCTACTGAGCGAA GTG TTCGCTCGGCAGG TGTTAATGTACCACT TERM 967 853699 - 853725 + G 80 -11.6 -2.51547 | opp_overlap 853698 853697, overlap 853698 853696 TTGATACCGCAAATT CTACTGAGCGAA GTG TTCGCTCGGCAG GTGTTAATGTACCAC Cphy_0654 853053 - 855179 + | hydantoinase/oxoprolinase Cphy_0655 855418 - 856191 + | GntR family transcriptional regulator Cphy_0656 856268 - 857362 + | phosphomannose isomerase-like protein TERM 968 857518 - 857551 + F 100 -14.1 -4.40003 | opp_overlap 857518 857520 TAACAAGTAATTATA GAGCACTTTATCAAT GAAT ATTGGTAAGGTGCTC TTTGTATTTGTAAAA TERM 969 857551 - 857518 - f 76 -9.7 -2.99428 | opp_overlap 857518, overlap 857520 TAACAAGTAATTATA GAGCACTTTATCAAT GAAT ATTGGTAAGGTGCTC TTTGTATTTGTAAAA TERM 970 857705 - 857683 - f 72 -9.3 -2.68952 | opp_overlap 857682, overlap 857680 GCGAAACATAAGGTA TCATGATAC ATATA GTATCATGA ATAATCTATTAGAAA TERM 971 858203 - 858221 + G 75 -7.4 -4.28111 | CATGAAGAAAATTCT TCTGACCA TGG TGGACAGA TTTATTCCTCATATA Cphy_0657 857904 - 858521 + | TetR family transcriptional regulator Cphy_0658 858547 - 859488 + | hypothetical protein Cphy_0659 859616 - 860446 + | hypothetical protein TERM 972 860997 - 861008 + G 83 -5.8 -5.20216 | opp_overlap 860997 860996 GACGGTAATAAATAT CCGA TCAA TCGG TTTTTTCATGATCTG Cphy_0660 860487 - 861326 + | beta-lactamase domain-containing protein TERM 973 861438 - 861407 - g 81 -3 -5.60993 | gap 1, overlap 861389 861409 861430 CTTTTCATAAAAAAA GGCCTGTGGGTGC CTTTATT ACAC-CACAGGAC ACGGTGGACAGTATC Cphy_0661 861319 - 862434 + | esterase/lipase-like protein TERM 974 863671 - 863649 - g 78 -9 -3.74056 | opp_overlap 863648 GAAGAAGCAGTCAAA GCAGCTTCCG AAG CGGATGCAGC CGTTATCTTTGCCGG Cphy_0662 862473 - 864716 + | glycoside hydrolase family 3 protein TERM 975 864778 - 864726 - T 76 -7.1 -4.29977 | gap 1, opp_overlap 864730 864733, overlap 864728 864730 864733 AAATAACTTAATAAA GAT-AGAACGCGTCGCATTCTAGC TGAAAG GCTATTGTGCGACGCGTTCTTATT AAGGGGTTTCATCAC TERM 976 864775 - 864728 - T 93 -11.3 -3.73097 | opp_overlap 864730 864733, overlap 864726 864730 864733 ATAACTTAATAAAGA TAGAACGCGTCGCATTCTAGC TGAAAG GCTATTGTGCGACGCGTTCTT ATTAAGGGGTTTCAT TERM 977 864730 - 864773 + T 100 -16.8 -3.64283 | opp_overlap 864728 864726 864730 864733, overlap 864733 AACTTAATAAAGATA GAACGCGTCGCATTCTAGCT GAAA GGCTATTGTGCGACGCGTTC TTATTAAGGGGTTTC TERM 978 864773 - 864730 - T 100 -13.9 -3.43412 | opp_overlap 864730 864733, overlap 864728 864726 864733 AACTTAATAAAGATA GAACGCGTCGCATTCTAGC TGAAAG GCTATTGTGCGACGCGTTC TTATTAAGGGGTTTC TERM 979 864733 - 864770 + T 100 -12.7 -3.94877 | opp_overlap 864730 864728 864726 864733, overlap 864730 TTAATAAAGATAGAA CGCGTCGCATTCTAGCT GAAA GGCTATTGTGCGACGCG TTCTTATTAAGGGGT TERM 980 864770 - 864733 - T 83 -9.8 -3.83559 | opp_overlap 864733 864730, overlap 864730 864728 864726 TTAATAAAGATAGAA CGCGTCGCATTCTAGC TGAAAG GCTATTGTGCGACGCG TTCTTATTAAGGGGT Cphy_0663 866546 - 864876 - | ABC-type sugar transport system periplasmic component-like protein TERM 981 865118 - 865128 + g 78 -5.4 -4.98531 | overlap 865112 TGTTGGTTTTCTGGT CATC CCA GATG TTTTTACTTTCAAGA TERM 982 865401 - 865433 + g 82 -12.2 -2.52795 | opp_overlap 865417 CTTCGGATTTTTGCA GCTAGCGGTAAT ATAAGCAGG ATTACCGCTAGC TCCATTCGAGGACTT Cphy_0664 866795 - 867769 + | binding-protein-dependent transport systems inner membrane component Cphy_0665 867787 - 868674 + | binding-protein-dependent transport systems inner membrane component TERM 983 868743 - 868728 - f 95 -10.4 -4.66938 | ATTTTGAATATAAAA GCTGCC GGAC GGCAGC ATAATGGAGGTAAGA Cphy_0666 868759 - 871452 + | hypothetical protein Cphy_0667 871581 - 872183 + | TetR family transcriptional regulator TERM 984 872353 - 872314 - f 73 -4.4 -5.0925 | gap 1, opp_overlap 872316 872318, overlap 872316 872318 GGCTAAAATTAAAAA TAGA-GCACTCTATCATGT TAA AAATGATGGAGTGCTTCTT TTGGTTTTAATTTGA TERM 985 872316 - 872351 + F 93 -9.2 -4.74084 | gap 1, opp_overlap 872314 872316 872318, overlap 872318 CTAAAATTAAAAATA GA-GCACTCTATCATGT TAA AAATGATGGAGTGCTTC TTTTGGTTTTAATTT TERM 986 872350 - 872316 - f 76 -7.2 -4.16392 | opp_overlap 872316 872318, overlap 872314 872318 CTAAAATTAAAAATA GAGCACTCTATCATGT TAA AAATGATGGAGTGCTT CTTTTGGTTTTAATT TERM 987 872348 - 872318 - f 82 -9.8 -3.64947 | opp_overlap 872316 872318, overlap 872316 872314 AAAATTAAAAATAGA GCACTCTATCATGT TAA AAATGATGGAGTGC TTCTTTTGGTTTTAA TERM 988 872318 - 872348 + F 100 -12 -4.43392 | opp_overlap 872318 872316 872314, overlap 872316 AAAATTAAAAATAGA GCACTCTATCATGT TAA AAATGATGGAGTGC TTCTTTTGGTTTTAA Cphy_0668 873253 - 873825 + | hypothetical protein TERM 989 873862 - 873852 - f 80 -5.4 -5.31158 | CAAAAAAACTAAAAA CCTA AAT TAGG AGGGAAGGCTACGAT Cphy_0669 873964 - 874098 + | UDP-glucose 4-epimerase-like protein TERM 990 874400 - 874388 - g 75 -5.5 -4.72631 | opp_overlap 874388 AGCAATGGAACAAAA CCCTC TAC GAAGG TTTACCGAGGATGAA Cphy_0670 874314 - 874826 + | hypothetical protein TERM 991 874942 - 874964 + F 100 -9.9 -5.055 | opp_overlap 874942 GTAGCTACTATTAAA GGTTGGGTA TGTTC TACCCAGCC TTTTTTAGACGTTAG TERM 992 874964 - 874942 - f 74 -7.7 -3.79747 | opp_overlap 874942 GTAGCTACTATTAAA GGTTGGGTA TGTTC TACCCAGCC TTTTTTAGACGTTAG Cphy_0671 875177 - 876115 + | methyltransferase type 11 TERM 993 876129 - 876150 + F 86 -5.9 -5.51402 | AAAAATATATTAGCA TCCTACCAT ATAA ATGATAGGA TTTTTTTCCATGTAT Cphy_0672 876268 - 876849 + | TetR family transcriptional regulator Cphy_0673 876846 - 877607 + | abortive infection protein Cphy_0674 877705 - 878502 + | AraC family transcriptional regulator Cphy_0675 879014 - 879808 + | hypothetical protein TERM 994 879816 - 879845 + F 71 -7.9 -3.47322 | overlap 879836 AGGATTGATATTTTG GTCTCCTTGCC AAGTAAAA GGTAAGGGGAC TTGCTTATGATAGAG Cphy_0676 880172 - 880723 + | hypothetical protein TERM 995 880730 - 880760 + F 86 -4 -5.77853 | opp_overlap 880727 880731, overlap 880731 ACTGTATAAAAGCAA ACCCGATTCTGA CAAATAA TCAGGATTGGGA TTTTTTTTGCAACTT TERM 996 880731 - 880759 + F 77 -7.5 -4.05085 | opp_overlap 880727 880731, overlap 880730 CTGTATAAAAGCAAA CCCGATTCTGA CAAATAA TCAGGATTGGG ATTTTTTTTGCAACT TERM 997 881186 - 881196 + G 73 -6.8 -4.22652 | AAGTGAAGTAACTGT CGAG GAT CTCG TTTTAGATGATATCA TERM 998 882179 - 882193 + G 74 -4.3 -5.02074 | opp_overlap 882183 882187 AATTCGAAGTAATGC GAAAG AAACG CTTTC TTTTTTCAAAAATGA Cphy_0677 880830 - 883178 + | ATPase, P-type (transporting), HAD superfamily, subfamily IC Cphy_0678 883324 - 883950 + | phosphoesterase PA-phosphatase related Cphy_0679 884053 - 884589 + | ECF subfamily RNA polymerase sigma-24 factor TERM 999 885019 - 885007 - g 74 -2.7 -5.31275 | TTTGACTACAAAAAA GTTTC TGA AAAAC TGGAACATAACTCCG Cphy_0680 884854 - 885786 + | hypothetical protein Cphy_0681 885976 - 886977 + | cobalamin (vitamin B12) biosynthesis CbiM protein TERM 1000 887039 - 886993 - T 100 -27.2 -4.62803 | opp_overlap 886993 886997, overlap 886997 GGAAATAATAAGAAA TAAAGGTATGATCTTTAGAAAC ATA GTTTCTAAAGATCATACCTTTA TTCATGATAAGGAAA TERM 1001 886993 - 887039 + T 100 -27.2 -3.21099 | opp_overlap 886993 886997, overlap 886997 GGAAATAATAAGAAA TAAAGGTATGATCTTTAGAAAC ATA GTTTCTAAAGATCATACCTTTA TTCATGATAAGGAAA TERM 1002 886997 - 887035 + T 100 -23.6 -4.2704 | opp_overlap 886997 886993, overlap 886993 ATAATAAGAAATAAA GGTATGATCTTTAGAAAC ATA GTTTCTAAAGATCATACC TTTATTCATGATAAG TERM 1003 887035 - 886997 - T 100 -23.6 -4.79953 | opp_overlap 886993 886997, overlap 886993 ATAATAAGAAATAAA GGTATGATCTTTAGAAAC ATA GTTTCTAAAGATCATACC TTTATTCATGATAAG Cphy_0682 888000 - 887062 - | Urea transporter TERM 1004 887323 - 887311 - G 70 -5.5 -4.45945 | ATTGAGCAAGGAAAA CTCGG AAC CCAAG CAATAAGCAGTAGCA TERM 1005 887574 - 887553 - G 74 -5.1 -4.74504 | ATGCTAACTTAAAAA CCTGAAGGT GATA ACCTGCAAG AATAAATAGCCATGT Cphy_0683 888924 - 888100 - | urease accessory protein UreD TERM 1006 888484 - 888503 + g 78 -9.3 -3.47573 | AGAAAATAGATTTCC CTTCGGG TCCCAT CCCGAAG TTATGATATCGGTAG Cphy_0684 889539 - 888928 - | urease accessory protein UreG Cphy_0685 890292 - 889606 - | urease accessory protein UreF Cphy_0686 890740 - 890285 - | urease accessory protein UreE Cphy_0687 892468 - 890756 - | urease subunit alpha Cphy_0688 892790 - 892470 - | urease subunit beta Cphy_0689 893111 - 892809 - | urease, gamma subunit Cphy_0690 893808 - 894158 + | hypothetical protein Cphy_0691 894200 - 894973 + | cobalt ABC transporter, inner membrane subunit CbiQ TERM 1007 895186 - 895175 - f 73 -4.4 -5.10077 | AAATATGCGAAAAAA TAGC TACA GCTA AAAGTTTGCCGGTTA Cphy_0692 895224 - 895958 + | ABC transporter related TERM 1008 896020 - 895991 - T 100 -11.6 -5.37043 | opp_overlap 895991 AGTTCATAGAAAAAA GGCTTCCAATGA AAACAA TCATTGAAAGCC TTTTTTTCTATGGTG TERM 1009 895991 - 896020 + T 100 -9.4 -5.74122 | opp_overlap 895991 AGTTCATAGAAAAAA GGCTTCCAATGA AAACAA TCATTGAAAGCC TTTTTTTCTATGGTG Cphy_0693 896864 - 896088 - | endonuclease/exonuclease/phosphatase Cphy_0694 900245 - 896904 - | hypothetical protein TERM 1010 897412 - 897422 + g 78 -5.4 -5.00616 | opp_overlap 897412 TTAATACGCATTAAG GCAT CCC ATGC TTTTTTAGAAAGGCC TERM 1011 899256 - 899275 + g 73 -2.1 -5.34555 | TGTTGTTAGTTCTTT GTCTTGT AATACA ACATGAC TTTTTTCTGGTGTGA TERM 1012 899572 - 899601 + g 75 -5.7 -4.8622 | overlap 899575 AAGGCTTCGGTTTGA AGGGCGGTATGAG CTAA CTCATACTGCTTA TTTTTGCTTGGAAGA TERM 1013 899575 - 899598 + g 95 -11.8 -4.53777 | overlap 899572 GCTTCGGTTTGAAGG GCGGTATGAG CTAA CTCATACTGC TTATTTTTGCTTGGA TERM 1014 900513 - 900502 - H 77 -4.4 -5.17488 | AATATCAAAACAAAA GGAA ACGT TTCC AATTACACAAATATC Cphy_0695 900644 - 901510 + | binding-protein-dependent transport systems inner membrane component Cphy_0696 901526 - 902437 + | binding-protein-dependent transport systems inner membrane component Cphy_0697 902506 - 904050 + | extracellular solute-binding protein TERM 1015 904090 - 904056 - f 82 -10.1 -3.20491 | opp_overlap 904061 904086, overlap 904061 TATTAAATAAAGAAT TAAAAGGCTGCTGTA GGAAT TACGGCAGCCTTTTT TGATAAAAAATATAT TERM 1016 904085 - 904061 - f 93 -10 -4.65969 | opp_overlap 904061, overlap 904056 AATAAAGAATTAAAA GGCTGCTGTA GGAAT TACGGCAGCC TTTTTTGATAAAAAA TERM 1017 904061 - 904085 + F 100 -12.9 -5.14563 | opp_overlap 904061 904056 AATAAAGAATTAAAA GGCTGCTGTAG GAA TTACGGCAGCC TTTTTTGATAAAAAA TERM 1018 904641 - 904631 - g 70 -5.4 -4.49314 | GATGATGAAAAAGAA GCTT ATA AAGC AACGAAATATTTAAT Cphy_0698 904124 - 905161 + | LacI family transcription regulator TERM 1019 905218 - 905180 - f 76 -9.7 -3.0806 | opp_overlap 905183, overlap 905183 GTGAAAGTGTGAAGA GAATTTCTAAGGCACCA AAAGA CGCTGCCTAAGAAATTC TAAAGCTCCACATAA TERM 1020 905246 - 905234 - f 71 -7.7 -3.51161 | TAAAGCTCCACATAA CCTAC TGA GTAGG CATATTCAAGCGGTA Cphy_0699 905298 - 907529 + | glycoside hydrolase family 3 protein TERM 1021 907589 - 907567 - T 87 -7.8 -4.92757 | TTACTAATAATAAAA TTTCAGTATC TTG GATTCTGAAA CAAAAGGAATCTTTG TERM 1022 907683 - 907652 - T 100 -12.5 -5.16133 | opp_overlap 907652 ATTATAATATAAAAA TGCGCCTTGTTTT GATCTG AAAACAAGACGCA TTTTTTAAATTATCT TERM 1023 907652 - 907683 + T 100 -10.3 -5.20154 | opp_overlap 907652 ATTATAATATAAAAA TGCGCCTTGTTTT GATCTG AAAACAAGACGCA TTTTTTAAATTATCT Cphy_0700 908227 - 907805 - | hypothetical protein Cphy_0701 908541 - 909215 + | hypothetical protein Cphy_0702 909243 - 909911 + | hypothetical protein TERM 1024 910874 - 910858 - g 74 -4.4 -5.03945 | gap 1 TAAGAAGGACAAAAA GCGC-GT AATC ACAGCGC TTGAAAATCTGAACA Cphy_0703 909941 - 911932 + | spore coat protein CotH Cphy_0704 911972 - 912658 + | two component transcriptional regulator Cphy_0705 912662 - 913960 + | integral membrane sensor signal transduction histidine kinase TERM 1025 913963 - 914006 + F 81 -10.4 -2.90992 | opp_overlap 913964 913969, overlap 913969 TAATAATATGTAAAA TGAAAACGCCTCATAGGGTA AGAA TGCCCTGTGGCGCGTTTTTG TCATTTCAGGCAATT TERM 1026 913969 - 914000 + F 100 -9.4 -5.04325 | opp_overlap 913964 913969, overlap 913963 TATGTAAAATGAAAA CGCCTCATAGGGTA AGAA TGCCCTGTGGCGCG TTTTTGTCATTTCAG TERM 1027 914051 - 914062 + F 70 -7.2 -3.76411 | overlap 914045 AAGCGTAAGCGGATT GCGG ATAT CCGC TTTGACTGGTTTTAA TERM 1028 914172 - 914160 - f 74 -6.3 -4.47456 | opp_overlap 914160 ATATTCAATAAGAAA TTGGT AGT ACCAA TTTTCTATTACTTTT TERM 1029 914160 - 914172 + F 80 -6.3 -4.77629 | opp_overlap 914160 ATATTCAATAAGAAA TTGGT AGT ACCAA TTTTCTATTACTTTT Cphy_0706 914234 - 914629 + | LrgA family protein Cphy_0707 914626 - 915318 + | LrgB family protein TERM 1030 919440 - 919458 + G 78 -9.6 -3.63073 | CGAAAATGCTTTTAT CCAAATGG CAG CCGTTTGG TTATTAAGGAGTATC Cphy_0708 915405 - 919550 + | DEAD/DEAH box helicase domain-containing protein TERM 1031 919592 - 919556 - T 95 -6 -5.72207 | gap 1, opp_overlap 919557, overlap 919557 TCGAAAGTAAAAAAA GCCACAATCAGAA-TAG TGAA CTAATTCAGATTGTGGT TTTTTACTGCTATAA TERM 1032 919557 - 919591 + T 100 -9.5 -5.20216 | gap 1, opp_overlap 919556 919557 CGAAAGTAAAAAAAG CCACAATCAGAA-TAG TGAA CTAATTCAGATTGTGG TTTTTTACTGCTATA TERM 1033 919591 - 919557 - T 86 -9.5 -4.01698 | gap 1, opp_overlap 919557, overlap 919556 CGAAAGTAAAAAAAG CCACAATCAGAA-TAG TGAA CTAATTCAGATTGTGG TTTTTTACTGCTATA Cphy_0709 920515 - 919637 - | AraC family transcriptional regulator Cphy_0710 920894 - 921913 + | NAD-dependent epimerase/dehydratase TERM 1034 922035 - 922003 - T 82 -6.3 -5.00267 | AACGAGAAAAAGAAA CAAGATAAAGTACAC CTC GCGAACTTTTCCTTG TTATGAACAAAAATA TERM 1035 922105 - 922049 - T 79 -4.9 -5.1356 | gap 3, opp_overlap 922056, overlap 922051 922055 922056 TGTTATGAACAAAAA TACAAAGCGGAATATTCATATGG-GAGA TTAT TTTCACCATA-GAATATTCCG-TTTGTT TTACCGTGAAGTAAA TERM 1036 922103 - 922051 - T 80 -7.5 -4.19587 | gap 3, opp_overlap 922056, overlap 922049 922055 922056 TTATGAACAAAAATA CAAAGCGGAATATTCATATGG-GAGA TTAT TTTCACCATA-GAATATTCCG-TTTG TTTTACCGTGAAGTA TERM 1037 922099 - 922056 - T 74 -8.5 -3.36213 | opp_overlap 922056, overlap 922055 922051 922049 AACAAAAATACAAAG CGGAATATTCATATGG-GAGA TTAT TTTCACCATA-GAATATTCCG TTTGTTTTACCGTGA TERM 1038 922056 - 922099 + T 95 -10.7 -4.67048 | opp_overlap 922056 922055 922051 922049 AACAAAAATACAAAG CGGAATATTCATATGG-GAGA TTAT TTTCACCATA-GAATATTCCG TTTGTTTTACCGTGA Cphy_0711 924019 - 922139 - | glycoside hydrolase family protein TERM 1039 923130 - 923112 - G 77 -10.4 -2.8055 | overlap 923109 GACTCTATAACATCA TCTCCATA AGT TATGGAGA CATCATAAAGGTAAG TERM 1040 925145 - 925163 + G 78 -10.4 -3.09987 | opp_overlap 925143 TGTTCGAAATAAGCT TTCCTCTA ATG TAGAGGAA TTAACTAGATATTGC Cphy_0712 924369 - 925250 + | hypothetical protein TERM 1041 925299 - 925312 + G 78 -5.3 -5.00616 | ATGGATATTACACTT GGTAT TTTA ATACC TTTTTTAGGAACAAC Cphy_0713 925284 - 926060 + | zinc/iron permease TERM 1042 926108 - 926069 - f 100 -9.6 -5.27023 | opp_overlap 926074 ATCCTAAAAATAAAA TTAAACACGATAGGAA TTATTATG TTTCTATCGTGTTTAA TAGCAATCATGGCGG TERM 1043 926074 - 926103 + F 75 -8 -3.73953 | opp_overlap 926069 AAAAATAAAATTAAA CACGATAGGAAT TATTAT GTTTCTATCGTG TTTAATAGCAATCAT Cphy_0714 926191 - 926694 + | GreA/GreB family elongation factor Cphy_0715 926840 - 927283 + | hypothetical protein TERM 1044 927974 - 927962 - g 73 -6.3 -4.52266 | AAGTAAATAGTAAAA TTACC GGT GGTAA AGCAGTTATACAGAA TERM 1045 928942 - 928928 - g 86 -4.2 -5.68489 | CAGAACAAGAAAAAA TCACAG GTG CAGTGA AAGGTATTTCTGATG Cphy_0716 927316 - 929520 + | SecD/SecF family protein-export membrane protein TERM 1046 929608 - 929597 - f 77 -3 -5.69068 | GAAAAATAGAAAAAA TTAG CTTA CTAA ATACATCATGCATTA TERM 1047 929806 - 929796 - g 76 -3.2 -5.38958 | ATGGAGAAACAAAAA CTAG AAT CCAG GCAGGAGAATAAGGC TERM 1048 929940 - 929959 + G 73 -2.2 -5.42259 | overlap 929944 GGAATATATGACTCG TTAATAAC ATCA GTTAGTAA TTTTTTTCAAAATCC Cphy_0717 929781 - 930629 + | hypothetical protein TERM 1049 930676 - 930700 + T 100 -17.3 -2.94412 | opp_overlap 930676 930680, overlap 930680 TTTCCTTGTCATGAA GAAAGGAGGGA AAT TCCCTCCTTTC TAATTTGAAGTTCAA TERM 1050 930700 - 930676 - T 100 -17.3 -3.14132 | opp_overlap 930676 930680, overlap 930680 TTTCCTTGTCATGAA GAAAGGAGGGA AAT TCCCTCCTTTC TAATTTGAAGTTCAA TERM 1051 930680 - 930696 + T 100 -12.3 -4.14056 | opp_overlap 930676 930680, overlap 930676 CTTGTCATGAAGAAA GGAGGGA AAT TCCCTCC TTTCTAATTTGAAGT TERM 1052 930696 - 930680 - T 100 -12.3 -4.24342 | opp_overlap 930680 930676, overlap 930676 CTTGTCATGAAGAAA GGAGGGA AAT TCCCTCC TTTCTAATTTGAAGT Cphy_0718 932423 - 931839 - | hypothetical protein TERM 1053 933440 - 933385 - R 100 -12.9 -4.52142 | opp_overlap 933390 ATTATAAAACATAAA TGAAATGGAATATTCCGATGATAGA AATTTG TCTCTCAAAGGAATACTCCATTTCA TACTAAAACTACTAA TERM 1054 933494 - 933506 + r 82 -2.7 -5.93809 | opp_overlap 933491, overlap 933491 TAATACCCAGAAGCT TTATG AAG CATGA TTTTTTTTGTAGCGC Cphy_0719 934186 - 933494 - | hypothetical protein TERM 1055 934341 - 934329 - R 72 -4.9 -4.92757 | overlap 934321 GTATTAATAATAAAA CTATT AGA AATAG GAAAAAGCAGAGATG TERM 1056 934349 - 934396 + r 74 -5.4 -4.74504 | gap 2, opp_overlap 934349 AGAAATAGGAAAAAG CAGAGATGAATAAATTTTGATT TCTCAC AAT-AAAGTT-ATTCATCTCTG TTTTTAAATTGAGCT Cphy_0720 934784 - 934410 - | flavin-nucleotide-binding protein-like protein Cphy_0721 934969 - 936231 + | hypothetical protein TERM 1057 936273 - 936312 + F 100 -15.3 -5.21709 | GTGTATCTCATTTTA TAGGCTCTGTATCAAGT GTTGCG ATTTGATGCAGAGCCTA TTTTTTCATATAAAA Cphy_0722 936471 - 936635 + | hypothetical protein TERM 1058 936670 - 936714 + T 95 -8.8 -5.04597 | gap 1, opp_overlap 936672, overlap 936672 TATAACGCACTAAAA AAGAACAACTCGAATCAATCT TAAT AGAA-GGTTCGAGTTGTTCTC TTTTTGTATCTAGGT TERM 1059 936672 - 936712 + T 100 -11.4 -4.14422 | gap 1, opp_overlap 936672, overlap 936670 TAACGCACTAAAAAA GAACAACTCGAATCAATCT TAAT AGAA-GGTTCGAGTTGTTC TCTTTTTGTATCTAG TERM 1060 936712 - 936672 - T 95 -9.2 -5.18357 | gap 1, opp_overlap 936672 936670 TAACGCACTAAAAAA GAACAACTCGAATCAATCT TAAT AGAAGG-TTCGAGTTGTTC TCTTTTTGTATCTAG Cphy_0723 937480 - 936761 - | hypothetical protein TERM 1061 937532 - 937563 + r 93 -9.6 -4.55689 | gap 1 CTAAACGTAGTTTAA TCTCACGATTCTTAG CTG CTT-GAATCGTGAGA TTTTCTGTAACTCAT Cphy_0724 938890 - 937631 - | NLP/P60 protein TERM 1062 938802 - 938812 + g 76 -6.8 -4.371 | overlap 938795 938791 GTTTCATTTGCTGCT GCAG CAT CTGC TTTTACTATACTCAA TERM 1063 939086 - 939056 - R 100 -6.8 -5.65678 | opp_overlap 939056 ATAAAATAGAAAAAA CGTTCCATGCACTT TTA AAGTGTTAGGAACG TTTTTAATTAAAATG TERM 1064 939056 - 939086 + r 93 -9 -4.87291 | opp_overlap 939056 ATAAAATAGAAAAAA CGTTCCATGCACTT TTA AAGTGTTAGGAACG TTTTTAATTAAAATG Cphy_0725 940941 - 939094 - | hypothetical protein TERM 1065 939177 - 939190 + g 70 -5.3 -4.43309 | ACAGGTTCGTAGATT GATAG AGAT CTATC TTTTGGTTAAAATTA Cphy_0726 941104 - 941436 + | arsenate reductase and related Cphy_0727 941610 - 942236 + | hypothetical protein TERM 1066 942282 - 942237 - T 86 -9.9 -3.72087 | opp_overlap 942242 942243 942245, overlap 942245 942248 ATTAAGTTAATATAA TTTACAGAGAAGGCTAATGAA ATAA CTCATTAGCCTTCTCATTTAA TTGTTCGCATGATGT TERM 1067 942242 - 942277 + T 100 -13.5 -4.0802 | opp_overlap 942237 942245 942248, overlap 942243 942245 GTTAATATAATTTAC AGAGAAGGCTAATGA AATAAC TCATTAGCCTTCTCA TTTAATTGTTCGCAT TERM 1068 942243 - 942276 + T 100 -17 -3.04089 | opp_overlap 942237 942245 942248, overlap 942242 942245 TTAATATAATTTACA GAGAAGGCTAATGA AATAAC TCATTAGCCTTCTC ATTTAATTGTTCGCA TERM 1069 942274 - 942245 - T 100 -14.5 -2.97827 | opp_overlap 942243 942242 942245, overlap 942237 942248 AATATAATTTACAGA GAAGGCTAATGAA ATAA CTCATTAGCCTTC TCATTTAATTGTTCG TERM 1070 942245 - 942274 + T 100 -13.8 -3.07051 | opp_overlap 942245 942237 942248, overlap 942243 942242 AATATAATTTACAGA GAAGGCTAATGA AATAAC TCATTAGCCTTC TCATTTAATTGTTCG TERM 1071 942271 - 942248 - T 87 -10.4 -3.62384 | opp_overlap 942245 942243 942242, overlap 942245 942237 ATAATTTACAGAGAA GGCTAATGAA ATAA CTCATTAGCC TTCTCATTTAATTGT Cphy_0728 942648 - 942250 - | hypothetical protein TERM 1072 943113 - 943140 + r 77 -8.5 -3.61922 | opp_overlap 943113 ATTCATTCTAAAAAA GCTGCCCTAAA CCAAAA TTTAGGACAGC TTTAAAATAGGTATT TERM 1073 943140 - 943113 - R 100 -11.4 -5.05782 | opp_overlap 943113 ATTCATTCTAAAAAA GCTGCCCTAAAC CAAA ATTTAGGACAGC TTTAAAATAGGTATT Cphy_0729 943824 - 943159 - | proton-coupled thiamine transporter YuaJ TERM 1074 943999 - 944012 + r 71 -2.3 -5.47964 | opp_overlap 943994 943999, overlap 943991 TCATAATTAAGAAAA GTTCG CGAA CGTAC TTTTTCTTGTTTTAT Cphy_0730 945086 - 944280 - | AraC family transcriptional regulator TERM 1075 944403 - 944429 + g 74 -4.3 -5.00846 | AGCCAACTGTACTGA GTCACCCTGCT TTAAT AGCTCGGTGGC TTTTTCTAATCTTTG TERM 1076 944976 - 944964 - G 76 -3.3 -5.28942 | overlap 944966 GATTGGAAATAAAAA TCCTC CTT GTGGA AACTTGCAATGAAAT Cphy_0731 945272 - 946234 + | transport system permease protein Cphy_0732 946231 - 947199 + | transport system permease protein Cphy_0733 947196 - 947954 + | ABC transporter related TERM 1077 948125 - 948106 - f 79 -5 -5.22481 | overlap 948109 TATAAATAAAGAAAA GGAGGAAT AATG ATTCCTAC GTGACATGCTCCCCA TERM 1078 948213 - 948227 + F 89 -8.6 -4.60041 | opp_overlap 948203 GTAAGCGAGCTAACC CCGTAT ATC ATACGG TTTTTACGAATGAGT TERM 1079 948471 - 948456 - g 72 -4 -5.00616 | gap 1, overlap 948459 GGTTGCGCTAAAAAA CAGGGTG ATA CACC-TG AAAATAATGCAAATA Cphy_0734 948342 - 949388 + | periplasmic binding protein TERM 1080 949476 - 949501 + T 71 -7.7 -3.37685 | gap 1, opp_overlap 949469 949475 949484, overlap 949473 949484 CCCGGAAATGCAAAC CTGCATAAGGCT AAA AGCCTTAT-CGG TATTTCCGGGATTTT Cphy_0735 950220 - 949585 - | redoxin domain-containing protein Cphy_0736 951035 - 950367 - | cytochrome c biogenesis protein transmembrane region Cphy_0737 951365 - 951799 + | rhodanese domain-containing protein Cphy_0738 952290 - 951910 - | MerR family transcriptional regulator Cphy_0739 952692 - 953006 + | thioredoxin TERM 1081 953000 - 952990 - T 71 -5.4 -4.65168 | AGGATATCTTAAAAA TGCT TCC AGCA CAATAAGGATATTTG TERM 1082 953062 - 953118 + T 74 -5.3 -4.83759 | gap 1, opp_overlap 953062 953061 ATTTAATAATAAAAG GTGAGAAGAATCAAACAAATCCTAGG AAAGAA CTAAGGAT-TGATAGATTCTCCTCAC TTTTTAAATTTACTT Cphy_0740 953833 - 953159 - | Crp/FNR family transcriptional regulator TERM 1083 954547 - 954531 - g 84 -5.1 -5.29385 | AATTGAATTAAAAAA GGGTCAA ATC TTTACCC TAACAACAAATGATA TERM 1084 954950 - 954936 - g 73 -5.8 -4.4874 | TGCAAAAATTGAAAA TTTACA AGG TGTAAA CAATATTGATGAGAT TERM 1085 955269 - 955259 - g 70 -6.8 -4.1585 | GGACAATGGTTAAAA TCGC AAA GCGA ACCGAAGCAGATATC Cphy_0741 954274 - 956016 + | pyruvate kinase TERM 1086 956178 - 956126 - T 78 -9.2 -3.51232 | opp_overlap 956126 956129 956144, overlap 956123 956122 956129 TTTGCCTTAAATGAA CAAGGGAACCTCGCTCTATAGCTA TGAAT CAGCTATTTTGCGACGTTCCCTTA GTTTCAAAGAAGCGT TERM 1087 956175 - 956129 - T 79 -8.7 -3.89354 | opp_overlap 956129 956126 956144, overlap 956123 956122 956126 GCCTTAAATGAACAA GGGAACCTCGCTCTATAGCTA TGAAT CAGCTATTTTGCGACGTTCCC TTAGTTTCAAAGAAG TERM 1088 956129 - 956175 + T 73 -8 -3.51232 | opp_overlap 956123 956122 956126 956129, overlap 956126 956144 GCCTTAAATGAACAA GGGAACCTCGCTCTATAGCT ATGAATC AGCTATTTTGCGACGTTCCC TTAGTTTCAAAGAAG Cphy_0742 956944 - 956207 - | two component transcriptional regulator Cphy_0743 958054 - 957026 - | integral membrane sensor signal transduction histidine kinase TERM 1089 958358 - 958320 - H 86 -9.7 -4.11216 | opp_overlap 958323, overlap 958323 GGGGGAGTGTGAAAA GAATTTCTAAGGCACCA AAAAA CGCTGCCTAAGAAATTC TAAAATTCACACGGC Cphy_0744 958422 - 960350 + | ATP-dependent OLD family endonuclease TERM 1090 961167 - 961181 + G 70 -2.8 -5.09762 | overlap 961168 CATTTTATGCACCTG ACTTTC GAG GAAAGA TTTTATTTCTTGAAG Cphy_0745 960533 - 961483 + | peptidase U61 LD-carboxypeptidase A Cphy_0746 961569 - 962723 + | metal dependent phosphohydrolase TERM 1091 962967 - 962980 + G 70 -3.1 -4.90217 | overlap 962977 962978 TCAGGAAGGTTATAA CTGTT CGCA AGCAG TTTTTGCTGTATTTA Cphy_0747 962917 - 963900 + | C_GCAxxG_C_C family protein TERM 1092 964249 - 964289 + F 100 -15.6 -5.80817 | overlap 964240 GAACCGCGAGTGATA CTCGTCCCTTTCGAATAC GTTAA GTAATCGAAAGAGACGAG TTTTTTTATATTCAG TERM 1093 964344 - 964331 - f 74 -5.9 -4.54821 | ATTGTAATTATAAAA GGCGC TAAA GCACC AGAAATGAGGATATT TERM 1094 964870 - 964880 + G 70 -5.4 -4.41241 | overlap 964869 GTAATATCTTTCTAC TCTC AGG GAGA TTTTGTAGACCTTTG Cphy_0748 964360 - 966318 + | threonyl-tRNA synthetase TERM 1095 966371 - 966333 - f 89 -11.2 -3.60502 | opp_overlap 966333 ATATACACTTTTAAA GAGAGCAAACAGGAAGTT TTT AATTTCTTGTTTACTCTC TTTCTTTCTTCTATG TERM 1096 966333 - 966371 + F 100 -13.4 -4.76087 | opp_overlap 966333 ATATACACTTTTAAA GAGAGCAAACAGGAAGTT TTT AATTTCTTGTTTACTCTC TTTCTTTCTTCTATG Cphy_0749 966486 - 968486 + | methyl-accepting chemotaxis sensory transducer Cphy_0750 968580 - 969635 + | peptidylprolyl isomerase FKBP-type TERM 1097 969732 - 969773 + F 100 -14.7 -5.25699 | opp_overlap 969732 AAGTTGATTTCATAA GCTTGAATTTCTATGAGAG AAAG CGATCATAGAAATTCAAGC TTTTTCTTATATGCT TERM 1098 969773 - 969732 - f 100 -14.7 -3.3334 | opp_overlap 969732 AAGTTGATTTCATAA GCTTGAATTTCTATGAGAG AAAG CGATCATAGAAATTCAAGC TTTTTCTTATATGCT TERM 1099 969945 - 969975 + G 75 -7 -4.34119 | gap 1, overlap 969942 GCTTTGATATCCTAT GCCGAACCTTTCA GACAGG TGGAAGGTT-GGC TTGTTTATATTTTAT Cphy_0751 969857 - 971278 + | GerA spore germination protein TERM 1100 971422 - 971378 - f 100 -7.4 -5.50723 | opp_overlap 971387 971393, overlap 971383 TTACTAAAATAAAAA TC-TAAGCAAGAAAAAGCACGC CTA GCGAGCTTTTCCTTG-TCATGA ATAAGATAAAAATAA TERM 1101 971417 - 971383 - f 91 -12.2 -3.56123 | opp_overlap 971387 971393, overlap 971378 AAAATAAAAATCTAA GCAAGAAAAAGCACGC CTA GCGAGCTTTTCCTTGT CATGAATAAGATAAA TERM 1102 971387 - 971413 + F 80 -9.4 -3.4252 | opp_overlap 971383 971378, overlap 971393 TAAAAATCTAAGCAA GAAAAAGCACGC CTA GCGAGCTTTTCC TTGTCATGAATAAGA TERM 1103 971393 - 971407 + F 78 -7 -4.51174 | opp_overlap 971383 971378, overlap 971387 TCTAAGCAAGAAAAA GCACGC CTA GCGAGC TTTTCCTTGTCATGA Cphy_0752 971491 - 972207 + | purine nucleoside phosphorylase Cphy_0753 972312 - 973007 + | deoxyribose-phosphate aldolase TERM 1104 973088 - 973115 + G 75 -9.2 -3.15544 | opp_overlap 973087 973078 TAATATGGAATTTAC ATTTCCAGCTTG TAGG CAAGCTGGAGAG TTAGTGCCAATAAAG Cphy_0754 973056 - 973583 + | cytidine deaminase TERM 1105 973683 - 973740 + F 100 -17.8 -2.91061 | opp_overlap 973680 973692, overlap 973683 973685 973692 AGGAATTGAACATGC TATTATAAATCAGCATAATACTT-CTAC TGAT GTAGTAAGTATT-TGCTGATTTATAATA GCTTTTTTGTTGCCA TERM 1106 973683 - 973741 + F 100 -11.8 -3.86307 | gap 3, opp_overlap 973680 973692, overlap 973683 973685 973692 AGGAATTGAACATGC -TATTATAAATCAGCATAATACTT-CTAC TGAT GTAGTAAGTATT-TGCTGATTTATAATAG CTTTTTTGTTGCCAA TERM 1107 973685 - 973738 + F 100 -16 -2.99438 | opp_overlap 973680 973692, overlap 973683 973683 973692 GAATTGAACATGCTA TTATAAATCAGCATAATACTT-CTAC TGAT GTAGTAAGTATT-TGCTGATTTATAA TAGCTTTTTTGTTGC TERM 1108 973731 - 973692 - f 86 -9.7 -3.97388 | opp_overlap 973685 973683 973683 973692, overlap 973680 ACATGCTATTATAAA TCAGCATAATACTT-CTAC TGAT GTAGTAAGTATT-TGCTGA TTTATAATAGCTTTT TERM 1109 973692 - 973731 + F 86 -9.7 -4.01078 | opp_overlap 973680 973692, overlap 973685 973683 973683 ACATGCTATTATAAA TCAGCATAATACTT-CTAC TGAT GTAGTAAGTATT-TGCTGA TTTATAATAGCTTTT Cphy_0755 973946 - 975109 + | basic membrane lipoprotein TERM 1110 975138 - 975178 + F 89 -9.2 -4.45544 | gap 1, opp_overlap 975161 AAATGGATTAGGAGG GCTGTTGCAATATGG-GGT AATG ACAACCATGTTGTAACAGC TTTTCCTTCATGACA TERM 1111 975342 - 975355 + G 82 -6.7 -5.06223 | opp_overlap 975341 TGGCGCAGGAAAATC CACTC TGAT GAGTG TTTTGTTTGGTTTAT Cphy_0756 975211 - 976740 + | ABC transporter related Cphy_0757 976744 - 978171 + | inner-membrane translocator TERM 1112 978996 - 979009 + G 70 -6.7 -4.15029 | CCGTTTCTTGCAAGG CTTGG AATT CCAAG TTATTTGTATAAGAT Cphy_0758 978171 - 979124 + | inner-membrane translocator TERM 1113 979141 - 979183 + T 87 -10 -3.78775 | opp_overlap 979146, overlap 979144 979146 ATATCTATTGTTATA TAAAACAAGGAAAAGCTCAT GAA ACGTGCTTTTCCTTGTCTTG TTTGATACTAAAAAA TERM 1114 979144 - 979180 + T 86 -9.5 -4.0274 | opp_overlap 979146, overlap 979141 979146 TCTATTGTTATATAA AACAAGGAAAAGCTCAT GAA ACGTGCTTTTCCTTGTC TTGTTTGATACTAAA TERM 1115 979178 - 979146 - T 100 -14.3 -4.53303 | opp_overlap 979144 979141 979146 TATTGTTATATAAAA CAAGGAAAAGCTCAT GAA ACGTGCTTTTCCTTG TCTTGTTTGATACTA TERM 1116 979146 - 979178 + T 95 -12.1 -3.60323 | opp_overlap 979146, overlap 979144 979141 TATTGTTATATAAAA CAAGGAAAAGCTCAT GAA ACGTGCTTTTCCTTG TCTTGTTTGATACTA Cphy_0759 980723 - 979218 - | carboxypeptidase Taq TERM 1117 981141 - 981167 + H 100 -11.7 -5.40474 | AGTTGCCTTGATCCA CGTCTGTTAGG GAAAA TCTAACAGACG TTTTTTTGAACAGAT TERM 1118 981798 - 981810 + G 71 -4.9 -4.67641 | GAAAAAGAAAAAGTT CTATA TGG TATAG TTTTAGTTTTAACCT Cphy_0760 981285 - 982148 + | hypothetical protein TERM 1119 982505 - 982470 - f 83 -10.4 -3.31322 | opp_overlap 982474, overlap 982472 982473 GGTAACGCGTGATAA TATCCCGCCCTCTGAA GTAA TTCAGAGGGCGGTTTT TTTTCGTTTAGAGTT TERM 1120 982503 - 982472 - f 100 -13 -3.224 | opp_overlap 982474, overlap 982470 982473 TAACGCGTGATAATA TCCCGCCCTCTGAA GTAA TTCAGAGGGCGGTT TTTTTTCGTTTAGAG TERM 1121 982502 - 982473 - f 100 -16.5 -2.53119 | opp_overlap 982474, overlap 982472 982470 AACGCGTGATAATAT CCCGCCCTCTGAA GTAA TTCAGAGGGCGGT TTTTTTTCGTTTAGA TERM 1122 982474 - 982501 + F 100 -20 -6.02546 | opp_overlap 982473 982472 982470 ACGCGTGATAATATC CCGCCCTCTGAA GTAA TTCAGAGGGCGG TTTTTTTTCGTTTAG Cphy_0761 982643 - 983851 + | tyrosyl-tRNA synthetase TERM 1123 983932 - 983920 - f 76 -3.5 -5.38549 | TGTAAATAAGAAAAA TTATA GTA TATAA GAATAAGAAAATTTT TERM 1124 984137 - 984168 + G 78 -10.2 -3.36327 | opp_overlap 984135 984138, overlap 984138 984140 TGCGACAGCAAAACA ACAGGGGTACTATC AAGA GATGGTATCCCTGC TTATCGATAAAATAA TERM 1125 984138 - 984167 + G 93 -13.7 -2.61582 | opp_overlap 984135 984138, overlap 984137 984140 GCGACAGCAAAACAA CAGGGGTACTATC AAGA GATGGTATCCCTG CTTATCGATAAAATA TERM 1126 984167 - 984138 - g 86 -9.3 -4.29302 | opp_overlap 984138 984137 984140, overlap 984135 GCGACAGCAAAACAA CAGGGGTACTATC AAGA GATGGTATCCCTG CTTATCGATAAAATA TERM 1127 984140 - 984165 + G 77 -10.5 -2.8474 | opp_overlap 984138 984135, overlap 984138 984137 GACAGCAAAACAACA GGGGTACTATC AAGA GATGGTATCCC TGCTTATCGATAAAA Cphy_0762 983970 - 985172 + | hypothetical protein TERM 1128 985531 - 985498 - f 100 -15.3 -5.83226 | opp_overlap 985498 AATGCAACAAAAAAA GCCTGCAGGCTGGTA ATAC TTCCAGTCTGCAGGC TTTTTTGATTTATCA TERM 1129 985498 - 985531 + F 100 -17.5 -5.42514 | opp_overlap 985498 AATGCAACAAAAAAA GCCTGCAGGCTGGTA ATAC TTCCAGTCTGCAGGC TTTTTTGATTTATCA TERM 1130 985716 - 985733 + F 82 -4.7 -5.51612 | overlap 985722 GAAGTTTTAAGACAG GGAGGGC AAAG GCTCGCC TTTTGTTTTTTATAT TERM 1131 985722 - 985738 + F 77 -3 -5.56264 | overlap 985716 TTAAGACAGGGAGGG CAAAGG CTCGC CTTTTG TTTTTTATATTTCGA TERM 1132 985908 - 985928 + G 100 -8.3 -5.81412 | GTTACAGATGAGGCG CCGCATG TTCATCT CATGCGG TTTTTTTTGAATACC Cphy_0763 985767 - 986411 + | hypothetical protein TERM 1133 986670 - 986696 + F 100 -10.2 -5.14563 | opp_overlap 986668 TATAATTTTAATAGT TGCGTCGGTTTG AAA TAAACCTACGCA TTTTTTAATGCCAAA Cphy_0764 986994 - 988166 + | basic membrane lipoprotein TERM 1134 988205 - 988243 + F 80 -10.5 -2.69057 | opp_overlap 988230, overlap 988204 988203 GGGATTATAATTTTA GGGTGTTGCAAATAG AAAATAACA TTGTTTGCAACACCC ATATTATGTTTGAAA TERM 1135 988956 - 988944 - g 74 -2.7 -5.33405 | GGGACGAAAGAAAAA TTAGA ATC TCCAA AAGCAATGAAGGAAA Cphy_0765 988605 - 990140 + | ABC transporter related Cphy_0766 990133 - 991233 + | inner-membrane translocator Cphy_0767 991233 - 992192 + | inner-membrane translocator TERM 1136 992239 - 992285 + T 90 -8.3 -4.87665 | TCGGTAGAAGAGGTG GAGTGTTCAAAAACGGA AGGGTTTCAGGAG TCTGTTTTTGGACACTC TTTTTATAACTAGAG Cphy_0768 993160 - 992375 - | AraC family transcriptional regulator TERM 1137 993155 - 993145 - G 86 -5.4 -5.31877 | overlap 993147 ATCCACTATAAAAAA CTCT CAT AGAG CTCATGAGTACCCTC TERM 1138 993982 - 993964 - g 80 -2.4 -5.72207 | CTGAAATTAAAAAAA GAGCTGTT GTC AAGAACTC TACTTCCCCACATAA TERM 1139 994065 - 994080 + G 78 -6.1 -4.82901 | opp_overlap 994065 994064 994076 TCAAGCGAACACAAT GCGGA GTATAA TCCGC TTTTTATCAAAAACA Cphy_0769 993285 - 994607 + | glycoside hydrolase family protein Cphy_0770 994704 - 995759 + | hypothetical protein Cphy_0771 995811 - 996878 + | two component AraC family transcriptional regulator TERM 1140 997175 - 997142 - g 81 -8.2 -4.25283 | overlap 997143 ATGGTTCTAGGAAAA TCCTGCAACAGTAT GAGGAG ATTCTGTTGCAGGC TACCACAGATATCAA TERM 1141 997174 - 997143 - g 84 -11.7 -3.14848 | overlap 997142 TGGTTCTAGGAAAAT CCTGCAACAGTAT GAGGAG ATTCTGTTGCAGG CTACCACAGATATCA TERM 1142 997500 - 997518 + G 89 -7.5 -4.89605 | opp_overlap 997500, overlap 997505 TGCTTACAGGGACAA TCTTCCA GCAGA TGGAAGA TTTGTTGTTTTTTTG TERM 1143 997505 - 997525 + G 74 -2.6 -5.40072 | opp_overlap 997500, overlap 997500 ACAGGGACAATCTTC CAGCAGAT GGAAG ATTTGTTG TTTTTTTGAGCAGAC Cphy_0772 996904 - 998826 + | integral membrane sensor signal transduction histidine kinase Cphy_0773 999105 - 1000040 + | binding-protein-dependent transport systems inner membrane component Cphy_0774 1000095 - 1000940 + | binding-protein-dependent transport systems inner membrane component TERM 1144 1001046 - 1001027 - g 88 -3.5 -5.86609 | overlap 1001028 1001030 TGAAAAAAAGAAAAA TGACAGC CCTTTT GCTGGCA GTCGCAATGGTGGCA Cphy_0775 1001005 - 1002576 + | extracellular solute-binding protein TERM 1145 1003443 - 1003430 - g 73 -3.1 -5.07275 | opp_overlap 1003438 CCACACAGAGAAAAA GAACC TTGG GATTC CTCGGCGGGAGCCAT Cphy_0776 1002623 - 1003717 + | glycosy hydrolase family protein Cphy_0777 1003733 - 1004680 + | hypothetical protein TERM 1146 1004736 - 1004688 - f 77 -9 -3.2244 | opp_overlap 1004695 1004696, overlap 1004693 1004694 CAGGATAAGATCTAA TAGAACTGGGCTGTCGTACTAA GTAAA TTAGTACGACAGCCTCTTTGTA TCCAATAACCCATCG TERM 1147 1004731 - 1004693 - f 80 -8.9 -3.71517 | opp_overlap 1004695 1004696, overlap 1004688 1004694 TAAGATCTAATAGAA CTGGGCTGTCGTACTAA GTAAA TTAGTACGACAGCCTCT TTGTATCCAATAACC TERM 1148 1004730 - 1004694 - f 90 -12.4 -2.82187 | opp_overlap 1004695 1004696, overlap 1004693 1004688 AAGATCTAATAGAAC TGGGCTGTCGTACTAA GTAAA TTAGTACGACAGCCTC TTTGTATCCAATAAC TERM 1149 1004695 - 1004730 + F 100 -15.7 -4.05033 | gap 1, opp_overlap 1004694 1004693 1004688, overlap 1004696 AGATCTAATAGAACT G-GGCTGTCGTACTAA GTAAA TTAGTACGACAGCCTC TTTGTATCCAATAAC TERM 1150 1004696 - 1004728 + F 100 -19.4 -3.61946 | opp_overlap 1004694 1004693 1004688, overlap 1004695 GATCTAATAGAACTG GGCTGTCGTACTAA GTAAA TTAGTACGACAGCC TCTTTGTATCCAATA TERM 1151 1004782 - 1004794 + F 80 -7.7 -4.30253 | opp_overlap 1004776, overlap 1004773 CCCTAATTAGCATTT GCAAC GCA GTTGC TTATTTGTCTTTATG Cphy_0778 1004791 - 1005084 + | beta-lactamase domain-containing protein Cphy_0779 1005379 - 1006206 + | Cof-like hydrolase Cphy_0780 1006698 - 1006228 - | hypothetical protein TERM 1152 1006800 - 1006847 + r 83 -10.7 -3.11272 | opp_overlap 1006803, overlap 1006803 GCAATATTTTATTTA GAAGCCCCCCTTTTGTTGG ATGTATCTGA CTAACAAAAGGGGGGCTAA TCTTAACTAATAATC TERM 1153 1006844 - 1006803 - R 100 -14.6 -3.36505 | opp_overlap 1006800 1006803 ATATTTTATTTAGAA GCCCCCCTTTTGTTGG ATGTATCTGA CTAACAAAAGGGGGGC TAATCTTAACTAATA TERM 1154 1006803 - 1006844 + r 100 -16.8 -2.76468 | opp_overlap 1006803, overlap 1006800 ATATTTTATTTAGAA GCCCCCCTTTTGTTGG ATGTATCTGA CTAACAAAAGGGGGGC TAATCTTAACTAATA Cphy_0781 1007644 - 1006946 - | hypothetical protein TERM 1155 1007002 - 1007020 + g 76 -6.8 -4.50159 | opp_overlap 1007004 AAGCATATTCTTGAA CATCAAAG CTA TTTTGATG TTTCTTTAGATTCGC TERM 1156 1007590 - 1007616 + g 78 -3.8 -5.26918 | opp_overlap 1007590, overlap 1007615 GGGGGAATGAGGAAA TATTGCAGATTT GGT AAACCTCCAATA TTTTTTCTAAAATAT TERM 1157 1007615 - 1007630 + g 73 -3.4 -5.09762 | opp_overlap 1007590, overlap 1007590 TTGGTAAACCTCCAA TATTTT TTCT AAAATA TTTTGTTTGTTCAAA Cphy_0782 1007986 - 1007660 - | XRE family transcriptional regulator Cphy_0783 1008212 - 1008709 + | hypothetical protein TERM 1158 1009067 - 1009101 + F 100 -12.4 -5.7946 | opp_overlap 1009067 GTAATAGTTTATAAA GTATTCTGTCTTAGGA GTT TTCTAAGATAGAGTAC TTTTTTTATTGCCAG TERM 1159 1009279 - 1009295 + F 73 -8.1 -3.37522 | ATGTAAGTATAATTT TCGTTAT GTT ATAACGA TTGATTGAATGAGGT TERM 1160 1009413 - 1009449 + F 100 -9.5 -5.4505 | opp_overlap 1009413 1009414, overlap 1009414 GTTGATTTTATATAA GGCAGAGATACTCGATA TTT TTTCAAGTATCTCTGCA TTTTTTATTCAAGGA TERM 1161 1009449 - 1009413 - f 91 -11.7 -3.50393 | opp_overlap 1009413 1009414, overlap 1009414 GTTGATTTTATATAA GGCAGAGATACTCGATA TTT TTTCAAGTATCTCTGCA TTTTTTATTCAAGGA TERM 1162 1009448 - 1009414 - f 100 -15.2 -2.70022 | opp_overlap 1009413 1009414, overlap 1009413 TTGATTTTATATAAG GCAGAGATACTCGATA TTT TTTCAAGTATCTCTGC ATTTTTTATTCAAGG TERM 1163 1009414 - 1009448 + F 100 -13 -3.86307 | opp_overlap 1009414 1009413, overlap 1009413 TTGATTTTATATAAG GCAGAGATACTCGATA TTT TTTCAAGTATCTCTGC ATTTTTTATTCAAGG Cphy_0784 1009795 - 1010211 + | hypothetical protein Cphy_0785 1010397 - 1011677 + | phage protein Cphy_0786 1011690 - 1012169 + | phage protein TERM 1164 1012241 - 1012260 + F 77 -2.9 -5.65177 | gap 1, opp_overlap 1012241, overlap 1012244 GCAGTTATTGATATA TAG-GCGT GAAAG ACGCTCTA TTTTTTTATAGATAT TERM 1165 1012283 - 1012334 + F 100 -7.5 -5.44119 | gap 1, overlap 1012333 ATAGATATTATTTAT GCGGAGCTAATT-GGGATTCAT GGGAGTGAA AAGAAACCCAAATTAGCTCTGC TTTTTTTAGAATACA Cphy_0787 1012405 - 1012833 + | XkdN-like protein TERM 1166 1012838 - 1012879 + F 72 -8.9 -2.69869 | gap 1, opp_overlap 1012838, overlap 1012835 1012847 1012878 CAAAAAACTAATCAA TGGAGAGGATAGTGAGGCTT CTT ATGC-TCACTATTGTCTCCA TAAGTTTCATATGCT TERM 1167 1013021 - 1013036 + G 76 -3.2 -5.38497 | overlap 1013022 TAGGAGGTAGGCGAT GGCAGA TATA TCTGCA TTTTTTAATTTAAGT TERM 1168 1014723 - 1014733 + G 70 -5.4 -4.4261 | TGGAAGTTATCTGTT CTAC TAA GTAG TTTTAGTATTAAAGA Cphy_0788 1013019 - 1015619 + | phage tape measure protein TERM 1169 1015730 - 1015712 - g 76 -4.6 -5.19998 | overlap 1015713 AGAATCAAAATAAAA GCATTCAA TTA TTGAATGA AGAAGAAATAAATCT TERM 1170 1015729 - 1015713 - g 74 -8.1 -3.69559 | overlap 1015712 GAATCAAAATAAAAG CATTCAA TTA TTGAATG AAGAAGAAATAAATC TERM 1171 1016443 - 1016419 - g 70 -6.5 -4.17448 | overlap 1016420 GAAGCAAATGAGAAA GGACTGATGAA AGT TTCATCAATCA AAAAGCCTGCTATCA TERM 1172 1016442 - 1016420 - g 76 -10 -3.09384 | overlap 1016419 AAGCAAATGAGAAAG GACTGATGAA AGT TTCATCAATC AAAAAGCCTGCTATC Cphy_0789 1015630 - 1016487 + | peptidoglycan-binding LysM TERM 1173 1016673 - 1016684 + G 77 -3 -5.50313 | CTGTTTCGGGAAGAT GATA AGGA TATC TTTTTTGGTTTTATC Cphy_0790 1016502 - 1017458 + | putative phage cell wall hydrolase TERM 1174 1017478 - 1017518 + G 100 -8.3 -5.40625 | opp_overlap 1017477 1017478 1017480 ATACAAATCATTAAG CAGGCTGCGTTTGATGC GATTGAA GCGTCGAAACCAGCCTG TTTTTTGTATGGTGT TERM 1175 1017593 - 1017570 - g 79 -11.2 -3.03028 | opp_overlap 1017570, overlap 1017576 AAATATTCAGATAGA TCAGAAGTTA ATCT TAACTTCTGA TTTTTTGCTTTTACC TERM 1176 1017570 - 1017593 + G 100 -11.2 -5.46698 | opp_overlap 1017570 1017576 AAATATTCAGATAGA TCAGAAGTTA ATCT TAACTTCTGA TTTTTTGCTTTTACC Cphy_0791 1017451 - 1017768 + | hypothetical protein Cphy_0792 1017765 - 1018157 + | phage protein Cphy_0793 1018157 - 1019230 + | putative phage tail protein Cphy_0794 1019220 - 1019759 + | hypothetical protein Cphy_0795 1019764 - 1020864 + | hypothetical protein Cphy_0796 1020876 - 1022141 + | hypothetical protein Cphy_0797 1022153 - 1022530 + | hypothetical protein TERM 1177 1022741 - 1022722 - f 74 -9.2 -2.99471 | opp_overlap 1022722, overlap 1022724 TCATTTGCATACATA GAGCGCTC AAGT GGGCGCTC TTCTTTGTATGCGGA TERM 1178 1022722 - 1022741 + F 100 -11.4 -4.14627 | opp_overlap 1022722 1022724 TCATTTGCATACATA GAGCGCTC AAGT GGGCGCTC TTCTTTGTATGCGGA Cphy_0798 1022767 - 1023249 + | toxin secretion/phage lysis holin Cphy_0799 1023242 - 1023892 + | hypothetical protein Cphy_0800 1024262 - 1024017 - | hypothetical protein TERM 1179 1024893 - 1024865 - g 74 -7.5 -3.90048 | GTTTTGGTAAAAAGA TATCTGCTTATCC CAA GGGTAAGAAGATA ATGAAAGTTTTGATG Cphy_0801 1024756 - 1025178 + | hypothetical protein TERM 1180 1025212 - 1025201 - T 83 -4.4 -5.54338 | opp_overlap 1025201 GAAGGAAAATAAAAA TCAG CTAT CTGA TTCAATAGATGTTTC TERM 1181 1025305 - 1025354 + T 77 -8.8 -3.65529 | gap 1, opp_overlap 1025309, overlap 1025307 1025309 ATGTCAGACATCAAT GAAAGCCCCCCTTTTGTTAGATC TATAT GAT-TAACAAAAGAGGGGCTATA TTTAACTAACAATCT TERM 1182 1025307 - 1025352 + T 90 -11.4 -3.40775 | gap 1, opp_overlap 1025309, overlap 1025305 1025309 GTCAGACATCAATGA AAGCCCCCCTTTTGTTAGATC TATAT GAT-TAACAAAAGAGGGGCTA TATTTAACTAACAAT TERM 1183 1025309 - 1025350 + T 100 -14 -3.27408 | gap 1, opp_overlap 1025309, overlap 1025307 1025305 CAGACATCAATGAAA GCCCCCCTTTTGTTAGATC TATAT GAT-TAACAAAAGAGGGGC TATATTTAACTAACA TERM 1184 1025350 - 1025309 - T 100 -16.2 -3.99353 | gap 1, opp_overlap 1025309 1025307 1025305 CAGACATCAATGAAA GCCCCCCTTTTGTTAGATC TATAT GAT-TAACAAAAGAGGGGC TATATTTAACTAACA Cphy_0802 1026192 - 1025368 - | binding-protein-dependent transport systems inner membrane component Cphy_0803 1026971 - 1026189 - | ABC transporter related TERM 1185 1026344 - 1026391 + g 81 -4.4 -5.34857 | gap 1 GTACAATTACCCTAT CTGCTGTACTGATTGCCTC CGCTATATCAT GA-GTGATTAGTACAGCAG TTTTATTTTCTTTGC TERM 1186 1026766 - 1026776 + g 78 -6.8 -4.71426 | opp_overlap 1026759 TTAATATAGATACTT CCTG CAT CAGG TTTTATTAATCCAGC Cphy_0804 1028119 - 1029336 + | hypothetical protein TERM 1187 1029626 - 1029614 - g 81 -5.5 -5.20606 | AAAGAGGAAGAAAAA CCAGT GAT ACCGG ATGTTCCAGCTGGTA Cphy_0805 1029458 - 1031935 + | extracellular solute-binding protein TERM 1188 1031973 - 1031959 - f 77 -8.6 -3.58199 | ATTAAAGTTATACAA GTAGAG AAA CTCTAC AATAAAACAATTCTT TERM 1189 1032038 - 1031995 - f 85 -10.4 -3.54638 | opp_overlap 1031985 1032006, overlap 1031985 1031997 1032006 ACAATTCTTTTGAAA GATTATGGAAAGGGGGCG TTAGCTTT CGCCCCCTTTCTACAATG TGGGGTAAAAACATG TERM 1190 1032036 - 1031997 - f 100 -13 -3.34894 | opp_overlap 1032006, overlap 1031995 1032006 AATTCTTTTGAAAGA TTATGGAAAGGGGGCG TTAGCTTT CGCCCCCTTTCTACAA TGTGGGGTAAAAACA TERM 1191 1032006 - 1032027 + F 87 -10.1 -3.91144 | opp_overlap 1031997 1031995 1032006 GAAAGATTATGGAAA GGGGGCG TTAGCTTT CGCCCCC TTTCTACAATGTGGG TERM 1192 1032027 - 1032006 - f 86 -10.1 -3.72678 | opp_overlap 1032006, overlap 1031997 1031995 GAAAGATTATGGAAA GGGGGCG TTAGCTTT CGCCCCC TTTCTACAATGTGGG Cphy_0806 1032036 - 1033040 + | binding-protein-dependent transport systems inner membrane component TERM 1193 1033140 - 1033156 + G 73 -2.3 -5.42259 | opp_overlap 1033140 GCGCTGTCTCCAACA CGTTT AGTTATG AAACG TTTTTTTAGAAGTCG Cphy_0807 1033053 - 1034102 + | binding-protein-dependent transport systems inner membrane component Cphy_0808 1034115 - 1035296 + | oligopeptide/dipeptide ABC transporter, ATPase subunit Cphy_0809 1035289 - 1036257 + | oligopeptide/dipeptide ABC transporter, ATPase subunit TERM 1194 1036366 - 1036333 - f 100 -11.9 -4.99056 | opp_overlap 1036333 TAATAGAATTAAAAA TAAGTACTGCAAAGC GTAA GCTTAACAGTACTTA TTTTTGTAGCTTTAA TERM 1195 1036333 - 1036366 + F 100 -9.7 -4.94992 | opp_overlap 1036333 TAATAGAATTAAAAA TAAGTACTGCAAAGC GTAA GCTTAACAGTACTTA TTTTTGTAGCTTTAA Cphy_0810 1036632 - 1036952 + | hypothetical protein Cphy_0811 1037328 - 1037885 + | hypothetical protein Cphy_0812 1038064 - 1040445 + | extracellular solute-binding protein TERM 1196 1040527 - 1040554 + F 81 -9.2 -3.80858 | gap 1, opp_overlap 1040525 1040544, overlap 1040539 AAATTTGTACACATT CGTCTTCAGACGT AAA ACGTC-GTAGACG TTTGATAAGTTGTGC TERM 1197 1040554 - 1040544 - f 74 -6.8 -4.2349 | opp_overlap 1040527 1040539 TCTTCAGACGTAAAA CGTC GTA GACG TTTGATAAGTTGTGC TERM 1198 1041398 - 1041382 - g 83 -9.5 -3.86944 | GTTAGAAGTACTAAA TTCGGAT TTT ATCCGAA CAGCGAGAGCTAAGG Cphy_0813 1040714 - 1041700 + | binding-protein-dependent transport systems inner membrane component TERM 1199 1042671 - 1042682 + G 71 -4.4 -4.79352 | TCAAGTAAACTATGC TCAG CTTT CTGA TTTTGTTGTAGCTCC Cphy_0814 1041784 - 1043595 + | binding-protein-dependent transport systems inner membrane component Cphy_0815 1043605 - 1044765 + | oligopeptide/dipeptide ABC transporter, ATPase subunit TERM 1200 1045071 - 1045057 - g 75 -8.6 -3.55582 | opp_overlap 1045056 ACAAGACGTACACAA GCTTTC TAA GAAAGC ATTACGTGCACTTCG Cphy_0816 1044767 - 1045786 + | oligopeptide/dipeptide ABC transporter, ATPase subunit TERM 1201 1045829 - 1045869 + F 93 -6.4 -5.54885 | opp_overlap 1045829 TATATTAATAAAGAG CCAGTACAAGTAAG AGTAAATAAAAAA CTTATTTGTACTGG TTTTTTGTTAATCTT Cphy_0817 1046130 - 1046675 + | hypothetical protein TERM 1202 1046788 - 1046845 + F 100 -15.3 -2.69428 | opp_overlap 1046788 1046794, overlap 1046794 TTTCATTTCTATGAA TAAGGATGCTCTCTATTAGATGAATGG TTAG CTGTTTATCTAAAAGAGAGCATTTTTA ATTAATTACTTGTTA TERM 1203 1046794 - 1046839 + F 100 -14.3 -4.93547 | opp_overlap 1046788 1046794, overlap 1046788 TTCTATGAATAAGGA TGCTCTCTATTAGATGAATGG TTAG CTGTTTATCTAAAAGAGAGCA TTTTTAATTAATTAC Cphy_0818 1047126 - 1048745 + | radical SAM domain-containing protein Cphy_0819 1048941 - 1049783 + | hypothetical protein Cphy_0820 1049776 - 1050588 + | hypothetical protein Cphy_0821 1050649 - 1050906 + | hypothetical protein TERM 1204 1050954 - 1050928 - T 100 -11 -5.00642 | opp_overlap 1050928 TAATTTATATAAAAA GTCTGTTTTAGT ATA ACTGAAACAGAC TTTTTATTTTTTTAT TERM 1205 1050928 - 1050954 + T 100 -13.2 -5.89659 | opp_overlap 1050928 TAATTTATATAAAAA GTCTGTTTTAGT ATA ACTGAAACAGAC TTTTTATTTTTTTAT Cphy_0822 1052156 - 1050966 - | HAD family hydrolase Cphy_0823 1052389 - 1052733 + | hypothetical protein Cphy_0824 1053182 - 1052739 - | hypothetical protein TERM 1206 1053540 - 1053522 - g 73 -6 -4.35926 | opp_overlap 1053525 AGCGTAAATTTAAAA TCAGCAAG CTT CCTGCTAA CTTAGAACAATATAA Cphy_0825 1053497 - 1053994 + | adenylate cyclase TERM 1207 1054182 - 1054211 + F 100 -7.3 -5.46706 | gap 1, opp_overlap 1054182 CATAAGCAAAAACAA TGGG-GTAGTTGTG GTT CATAACTATACCCA TTTTTATTTTGCCCT TERM 1208 1054374 - 1054360 - g 70 -3.5 -5.05782 | AGCGATTGCAAAAAA TCCGG GAGAA CCAGA GTTTATTCAAGCGGT TERM 1209 1054408 - 1054393 - g 75 -9 -3.61268 | TATTCAAGCGGTAAA GGAGGT TCTT ACCTCC TTGAGACCAGTAGTG Cphy_0826 1054316 - 1055650 + | glutamate dehydrogenase TERM 1210 1055755 - 1055713 - T 93 -9.9 -4.68479 | gap 1, opp_overlap 1055715, overlap 1055714 1055715 1055717 1055720 ATAAAACAATGAAAA TGGAGAAGCCGTCCACCTGG TTAT CTAGGTGAACAGCTTC-CCT TTCTATCTAATCAAT TERM 1211 1055754 - 1055714 - T 100 -13.4 -3.38647 | gap 1, opp_overlap 1055715, overlap 1055713 1055715 1055717 1055720 TAAAACAATGAAAAT GGAGAAGCCGTCCACCTGG TTAT CTAGGTGAACAGCTTC-CC TTTCTATCTAATCAA TERM 1212 1055754 - 1055715 - T 100 -15.8 -2.61562 | opp_overlap 1055715, overlap 1055714 1055713 1055717 1055720 AAAACAATGAAAATG GAGAAGCCGTCCACCTGG TTAT CTAGGTGAACAGCTTCCC TTTCTATCTAATCAA TERM 1213 1055715 - 1055754 + T 100 -11.4 -4.1523 | opp_overlap 1055714 1055715 1055713 1055717 1055720 AAAACAATGAAAATG GAGAAGCCGTCCACCTGG TTAT CTAGGTGAACAGCTTCCC TTTCTATCTAATCAA TERM 1214 1055752 - 1055717 - T 100 -14.8 -2.82152 | opp_overlap 1055715, overlap 1055714 1055715 1055713 1055720 AACAATGAAAATGGA GAAGCCGTCCACCTGG TTAT CTAGGTGAACAGCTTC CCTTTCTATCTAATC TERM 1215 1055749 - 1055720 - T 85 -10.7 -3.53787 | opp_overlap 1055715, overlap 1055717 1055714 1055715 1055713 AATGAAAATGGAGAA GCCGTCCACCTGG TTAT CTAGGTGAACAGC TTCCCTTTCTATCTA Cphy_0827 1057131 - 1055896 - | spore germination protein TERM 1216 1056150 - 1056134 - G 78 -9.5 -3.63766 | opp_overlap 1056133 1056134, overlap 1056132 GATGGAGAAACAACA TCAAGTG GAG CACTTGA ATCTTCTTTTGGCTG TERM 1217 1056134 - 1056150 + g 73 -9.5 -2.8165 | opp_overlap 1056134 1056132, overlap 1056133 GATGGAGAAACAACA TCAAGTG GAG CACTTGA ATCTTCTTTTGGCTG Cphy_0828 1058326 - 1057121 - | hypothetical protein Cphy_0829 1059843 - 1058365 - | GerA spore germination protein TERM 1218 1060024 - 1060081 + r 89 -12.3 -2.59538 | opp_overlap 1060024, overlap 1060024 1060045 TAGGTAATTAAAAAG TGGATAGAATAGGTAAGCTCGGTACTA AATT TAGTACTTTACTTGTCTATTCTATCCA CTACTTTTATTGTTT TERM 1219 1060081 - 1060024 - R 71 -7.9 -3.52321 | opp_overlap 1060024 1060024 1060045 TAGGTAATTAAAAAG TGGATAGAATAGGTAAGCTCGGTACTA AATT TAGTACTTTACTTGTCTATTCTATCCA CTACTTTTATTGTTT Cphy_0830 1061153 - 1060164 - | redoxin domain-containing protein Cphy_0831 1061857 - 1061183 - | cytochrome c biogenesis protein transmembrane region TERM 1220 1062304 - 1062253 - R 95 -10.5 -4.59773 | gap 1, opp_overlap 1062253, overlap 1062294 GCGGACTGTTAAAAA GAGAACTCTTGCTG-ATAGCTGAT TTTAT ATCAGTTATCCAACAAAAGTTCCC TTTTACAATTAAAAA TERM 1221 1062253 - 1062304 + r 70 -6.1 -4.19238 | gap 1, opp_overlap 1062253 1062294 GCGGACTGTTAAAAA GAGAACTCTTGCTG-ATAGCTGAT TTTAT ATCAGTTATCCAACAAAAGTTCCC TTTTACAATTAAAAA Cphy_0832 1063100 - 1062345 - | hypothetical protein TERM 1222 1062564 - 1062582 + g 72 -8.2 -3.5121 | opp_overlap 1062556, overlap 1062562 GCTAAAAGTTAGATT TTCTACCG TAT TGGTAGAA TGTTCTTCTAGTAAT TERM 1223 1063117 - 1063129 + H 100 -7.7 -5.5112 | TTAACCTCTATTCTA GCACA TGT TGTGC TTTTTTCTTCATGAA Cphy_0833 1063868 - 1064716 + | hypothetical protein Cphy_0834 1064721 - 1065623 + | hypothetical protein TERM 1224 1066119 - 1066097 - g 79 -3.5 -5.56573 | overlap 1066108 1066110 AGAAAGAAAGAAAAA GAAACAAAA GTTAT TCTTGTTCC ATATCGGAATAAGGA Cphy_0835 1065620 - 1066297 + | hypothetical protein Cphy_0836 1066299 - 1067153 + | hypothetical protein Cphy_0837 1067143 - 1068885 + | AAA ATPase TERM 1225 1069904 - 1069914 + G 70 -6.8 -4.14243 | TCTATGTTTCTTCCT CCCA GTT TGGG TTTTAAAATACCGTG Cphy_0838 1068882 - 1070417 + | hypothetical protein Cphy_0839 1070451 - 1070855 + | hypothetical protein TERM 1226 1070966 - 1070925 - f 75 -8.2 -3.71917 | gap 1, opp_overlap 1070918 1070925 1070928, overlap 1070912 1070918 ATTCTAAACTTCAAA CCAGAAGTTTATACCTGCG TAATC CTC-GGTACAAACTTCTAG TCTACTGTGCAGGCA Cphy_0840 1071166 - 1071606 + | hypothetical protein Cphy_0841 1071887 - 1072348 + | hypothetical protein Cphy_0842 1072350 - 1072832 + | hypothetical protein TERM 1227 1073072 - 1073089 + G 79 -3.4 -5.42862 | TGTAGCGCTAAGTAA GGAGCT TGCCAC AGCTTC TTTTTTTCAAAGTAT Cphy_0843 1072878 - 1074005 + | hypothetical protein Cphy_0844 1074172 - 1075491 + | hypothetical protein Cphy_0845 1075493 - 1079431 + | hypothetical protein TERM 1228 1079501 - 1079470 - f 100 -16.2 -3.07443 | opp_overlap 1079458 1079474 1079480, overlap 1079472 1079474 1079480 TTATATTTTATGTAA TAGATTGAAAGGAT TCCT ATCCTTTCAATCTA TAGGAACAATATTCC TERM 1229 1079499 - 1079472 - f 100 -14.4 -3.09505 | opp_overlap 1079458 1079474 1079480, overlap 1079470 1079474 1079480 ATATTTTATGTAATA GATTGAAAGGAT TCCT ATCCTTTCAATC TATAGGAACAATATT TERM 1230 1079497 - 1079474 - f 84 -11.2 -3.10522 | opp_overlap 1079458 1079474 1079480, overlap 1079472 1079470 1079480 ATTTTATGTAATAGA TTGAAAGGAT TCCT ATCCTTTCAA TCTATAGGAACAATA TERM 1231 1079474 - 1079497 + F 83 -11.2 -2.87344 | opp_overlap 1079474 1079472 1079470 1079480, overlap 1079458 1079480 ATTTTATGTAATAGA TTGAAAGGAT TCCT ATCCTTTCAA TCTATAGGAACAATA TERM 1232 1080093 - 1080061 - f 100 -14.3 -5.33921 | opp_overlap 1080064 1080070, overlap 1080070 AAATCAATTAAAAAA CAAGAAAAAGTGCGC TTC GCGAACTTTTCCTTG TCATGAATAAAGGGA TERM 1233 1080064 - 1080090 + F 73 -8 -3.4252 | opp_overlap 1080061 1080070, overlap 1080070 TCAATTAAAAAACAA GAAAAAGTGCGC TTC GCGAACTTTTCC TTGTCATGAATAAAG TERM 1234 1080084 - 1080070 - f 87 -5.6 -5.54403 | opp_overlap 1080070 1080064, overlap 1080061 AAAAAACAAGAAAAA GTGCGC TTC GCGAAC TTTTCCTTGTCATGA TERM 1235 1081465 - 1081455 - f 72 -2.6 -5.49579 | TTAGAAAAAATAAAA TTTA TAA TAAA CGTTCATATTATATA Cphy_0847 1081497 - 1082285 + | amino acid ABC transporter periplasmic protein Cphy_0848 1082551 - 1083258 + | polar amino acid ABC transporter, inner membrane subunit Cphy_0849 1083248 - 1083991 + | ABC transporter related TERM 1236 1084063 - 1084030 - T 100 -13.3 -3.58726 | opp_overlap 1084030 TGGGCGCACAGAGAA GCACCCAATTAAGAA TAAA TTCTTAGCTGGGTGC TTTCTACTTAGAATA TERM 1237 1084030 - 1084063 + T 100 -13.3 -4.0616 | opp_overlap 1084030 TGGGCGCACAGAGAA GCACCCAATTAAGAA TAAA TTCTTAGCTGGGTGC TTTCTACTTAGAATA Cphy_0850 1085408 - 1084122 - | hypothetical protein Cphy_0851 1086121 - 1086771 + | two component LuxR family transcriptional regulator Cphy_0852 1086893 - 1087585 + | hypothetical protein TERM 1238 1088288 - 1088298 + G 70 -5.4 -4.4874 | TTTCTTATTATTCTG CCAA CAC TTGG TTTTCAGTTTTTAGA Cphy_0853 1087601 - 1089319 + | putative signal transduction histidine kinase TERM 1239 1089393 - 1089374 - f 95 -5.8 -5.77632 | opp_overlap 1089376, overlap 1089375 1089376 AAAATTAGAAAAAAA TCTGTTGA CGGC TCAACAAA ATGGTGCTAGAATAG TERM 1240 1089430 - 1089375 - f 71 -7 -4.02919 | opp_overlap 1089376, overlap 1089374 1089376 AAATTAGAAAAAAAT CTGTTGACGGCTCAACAAAATGGT GCTAGAAT AGCAATCTGTTGAGCAGTCAACAT TTTTAATTCTCAGAA TERM 1241 1089376 - 1089429 + F 95 -9 -4.93365 | opp_overlap 1089374 1089375 1089376 AATTAGAAAAAAATC TGTTGACGGCTCAACAAAATGGTG CTAGAA TAGCAATCTGTTGAGCAGTCAACA TTTTTAATTCTCAGA TERM 1242 1089429 - 1089376 - f 83 -10.5 -2.99311 | opp_overlap 1089376, overlap 1089374 1089375 AATTAGAAAAAAATC TGTTGACGGCTCAACAAAATGGT GCTAGAAT AGCAATCTGTTGAGCAGTCAACA TTTTTAATTCTCAGA TERM 1243 1089918 - 1089946 + G 71 -8.9 -3.20435 | TGCACAGGAGGTAGG GCGTACGATGAAA AAA TTTCATCGTCAGC TTGGTGAATCATTGA Cphy_0854 1089598 - 1090047 + | transcriptional regulator, TrmB TERM 1244 1091288 - 1091272 - g 70 -6.6 -4.08557 | TTGTGCAAAGAACAA TGGCAT TTATG ATGCCA GCTATGATGCTTATA Cphy_0855 1090050 - 1092317 + | ABC transporter related TERM 1245 1093806 - 1093793 - g 95 -8.1 -4.84262 | GAAGAAGTAATAAAA GCAGC GAAA GCTGC ACAGGTTGACCACTT Cphy_0856 1092314 - 1094194 + | ABC transporter related TERM 1246 1094260 - 1094213 - f 87 -10 -3.91959 | opp_overlap 1094213 1094246, overlap 1094228 ATATAATTATAACAA GGAGCTTTTGCAAAATAGATAA GAAT TTATCTATGGAGCAAGAGCTCC ATTTTTTATTACGAA TERM 1247 1094213 - 1094260 + F 100 -12.2 -3.86307 | opp_overlap 1094213 1094228, overlap 1094246 ATATAATTATAACAA GGAGCTTTTGCAAAATAGATAA GAAT TTATCTATGGAGCAAGAGCTCC ATTTTTTATTACGAA TERM 1248 1094246 - 1094261 + F 100 -9 -5.4505 | opp_overlap 1094213, overlap 1094213 ATAAGAATTTATCTA TGGAGC AAGA GCTCCA TTTTTTATTACGAAC TERM 1249 1096783 - 1096760 - g 75 -9 -3.50853 | opp_overlap 1096764 TCTCTGTAAGTAGAA TATATCCTGG AATT CCAGAATATA TCGCAGAAAATGGTC Cphy_0857 1094446 - 1097148 + | cellobiose phosphorylase-like protein Cphy_0858 1097657 - 1098994 + | glycoside hydrolase family protein TERM 1250 1099330 - 1099281 - g 71 -7.2 -3.88731 | opp_overlap 1099281 1099292 TAACATTAGATGAAA TGATGTATCATGTTCTCCTTGC TAAGAT GCAAGGAGAACTCTATGCCTCA TTTTTAGGAGAGAAA TERM 1251 1099281 - 1099330 + G 81 -7.2 -4.56597 | opp_overlap 1099281, overlap 1099292 TAACATTAGATGAAA TGATGTATCATGTTCTCCTTGC TAAGAT GCAAGGAGAACTCTATGCCTCA TTTTTAGGAGAGAAA TERM 1252 1099292 - 1099319 + G 100 -14.3 -2.94551 | opp_overlap 1099281, overlap 1099281 GAAATGATGTATCAT GTTCTCCTTGC TAAGAT GCAAGGAGAAC TCTATGCCTCATTTT Cphy_0859 1099142 - 1099768 + | hypothetical protein Cphy_0860 1099884 - 1100825 + | binding-protein-dependent transport systems inner membrane component TERM 1253 1101443 - 1101453 + G 70 -5.4 -4.41616 | TCAAAACCTGTATTA GCAA CCA TTGC TTTGTTTGCAGGAGT Cphy_0861 1100837 - 1101745 + | binding-protein-dependent transport systems inner membrane component Cphy_0862 1101768 - 1103474 + | extracellular solute-binding protein TERM 1254 1103517 - 1103560 + F 79 -9.9 -2.94938 | gap 1 TTTGATATAGTGTAA GGAAAAACAGCCTGTT-TTA AGAAA TAACTACAGGTTGTTTTTCC TATATCAAGTTTTAG TERM 1255 1103735 - 1103752 + G 70 -5.6 -4.41422 | overlap 1103732 TATTAATTATTGGAA CCATAG TAATTC CTATGG TTATTTTATCTGTCC TERM 1256 1104085 - 1104064 - g 81 -4.3 -5.27477 | opp_overlap 1104064 1104067, overlap 1104067 ATTGGAACTAAAAAA GTACCGGAA ATGA TGCCGGTTC TTTATTATATGGATC Cphy_0863 1103665 - 1105464 + | histidine kinase internal region Cphy_0864 1105480 - 1106991 + | two component AraC family transcriptional regulator TERM 1257 1107206 - 1107218 + G 73 -6.3 -4.49311 | TCTAGATAAGGATCA TTCCA TTA TGGAA TTTTATCCTGCTCAT TERM 1258 1107247 - 1107272 + G 73 -5.5 -4.62471 | gap 1, opp_overlap 1107247 1107250, overlap 1107250 ATCAGGCTTATCAGA TG-ACGAAAACC AAT GGATTTCGTACA TTTTTAAAGATTGAC TERM 1259 1108492 - 1108511 + G 80 -8.6 -3.97834 | opp_overlap 1108492 GTTCAGATAGGAAAA CGCTAGAG GATA CTTTAGCG TTTGTAATGGAGTTA TERM 1260 1108511 - 1108492 - g 76 -6.4 -4.39166 | opp_overlap 1108492 GTTCAGATAGGAAAA CGCTAGAG GATA CTTTAGCG TTTGTAATGGAGTTA Cphy_0865 1107042 - 1110134 + | hypothetical protein TERM 1261 1110258 - 1110301 + F 100 -9.9 -5.31072 | opp_overlap 1110258 ATGAATAAAATGAAA TAGGATAACAAAAAGGG GTTAGGTATA CCTTTTTTGTTGTCCTA TTTTTCTTATATTGT TERM 1262 1111421 - 1111409 - g 76 -3.4 -5.32882 | GAGGACGATAAAAAA GAAC GACTT GTTC CTATGTATAAGAAAG TERM 1263 1111471 - 1111485 + G 73 -5.8 -4.46212 | opp_overlap 1111471 1111469 1111479 GGAGATAACCAAAGA TGATTT AAC AAATCA TTTTGTAGTAAACCC Cphy_0866 1110773 - 1111921 + | beta-lactamase TERM 1264 1112016 - 1111986 - f 83 -10.7 -3.14211 | opp_overlap 1111986 ACTTTCCTTCATTAA TTCGTGTGAAATA CTCTT TATTTCACACAAA TTTAAGGGAGATACA TERM 1265 1111986 - 1112016 + F 76 -8.5 -3.53811 | opp_overlap 1111986 ACTTTCCTTCATTAA TTCGTGTGAAATA CTCTT TATTTCACACAAA TTTAAGGGAGATACA TERM 1266 1112908 - 1112885 - g 77 -2.5 -5.45652 | gap 2, overlap 1112889 ACTCTTAATAAAAAA TCCAGGTAGAG TATT CTC-ACC-GGA TGAAATCTATGAGCG Cphy_0867 1112355 - 1113065 + | two component transcriptional regulator TERM 1267 1114072 - 1114092 + G 70 -8.3 -3.36415 | AGCCAGAAGATATTT CGTTCGTTG AGC CGACGAATG TTACTATGGTTTATG Cphy_0868 1113087 - 1115621 + | integral membrane sensor signal transduction histidine kinase TERM 1268 1115690 - 1115748 + T 100 -9.3 -5.45652 | gap 1, opp_overlap 1115693, overlap 1115690 1115693 1115746 CCATGTCATAAATAA T-AATGCCAACTTTAAGTCTTATCTACA TTTT TATAGATAAGATCTAAAGTTGGCATCGA TTTTTTATTAGAAAT TERM 1269 1115690 - 1115747 + T 100 -13.1 -3.86307 | opp_overlap 1115693, overlap 1115690 1115693 1115746 CCATGTCATAAATAA TAATGCCAACTTTAAGTCTTATCTACA TTTT TATAGATAAGATCTAAAGTTGGCATCG ATTTTTTATTAGAAA TERM 1270 1115693 - 1115744 + T 100 -17 -2.99438 | opp_overlap 1115693, overlap 1115690 1115690 TGTCATAAATAATAA TGCCAACTTTAAGTCTTATCTACA TTTT TATAGATAAGATCTAAAGTTGGCA TCGATTTTTTATTAG TERM 1271 1115744 - 1115693 - T 100 -19.2 -4.15703 | opp_overlap 1115693 1115690 1115690 TGTCATAAATAATAA TGCCAACTTTAAGTCTTATCTACA TTTT TATAGATAAGATCTAAAGTTGGCA TCGATTTTTTATTAG Cphy_0869 1116722 - 1115859 - | degV family protein TERM 1272 1116457 - 1116439 - G 76 -9.6 -3.45023 | GTAGCATTACTACAA CTTCCGCT AAG AGCAGAAG AAAAACTAATATGAA TERM 1273 1116850 - 1116837 - H 72 -2.5 -5.41746 | opp_overlap 1116837 1116846 AATCTTGCAAAAAAA TAAAA ATCT TTTTA GTATTGTTTTAGTTT Cphy_0870 1117321 - 1117461 + | hypothetical protein TERM 1274 1117541 - 1117565 + F 82 -10.1 -3.1855 | opp_overlap 1117541 1117544, overlap 1117544 AAAGTGATGAATTAA TAAGCAGCG CGTATGT CGCTGCTTA TTCCATGTTAAGGAC TERM 1275 1117565 - 1117541 - f 84 -10.1 -3.41982 | opp_overlap 1117541 1117544, overlap 1117544 AAAGTGATGAATTAA TAAGCAGCG CGTATGT CGCTGCTTA TTCCATGTTAAGGAC TERM 1276 1117544 - 1117562 + F 70 -7.4 -3.7347 | opp_overlap 1117541 1117544, overlap 1117541 GTGATGAATTAATAA GCAGCG CGTATGT CGCTGC TTATTCCATGTTAAG TERM 1277 1117562 - 1117544 - f 72 -7.4 -3.83844 | opp_overlap 1117544 1117541, overlap 1117541 GTGATGAATTAATAA GCAGCG CGTATGT CGCTGC TTATTCCATGTTAAG TERM 1278 1117578 - 1117636 + F 77 -9.1 -3.21998 | opp_overlap 1117580 1117582 1117584 1117587, overlap 1117579 1117587 1117626 TTATTCCATGTTAAG GACATATAAGACTAGGAGTGGTTCATT GTATA AATGAATCAGTCCTGGCCTTATATGAG GTTGTTTTGCTTTAA TERM 1279 1117579 - 1117635 + F 89 -12.6 -2.52115 | opp_overlap 1117580 1117582 1117584 1117587, overlap 1117578 1117587 1117626 TATTCCATGTTAAGG ACATATAAGACTAGGAGTGGTTCATT GTATA AATGAATCAGTCCTGGCCTTATATGA GGTTGTTTTGCTTTA TERM 1280 1117634 - 1117580 - f 100 -13.9 -2.73483 | opp_overlap 1117579 1117578 1117587 1117626, overlap 1117582 1117584 1117587 ATTCCATGTTAAGGA CATATAAGACTAGGAGTGGTTCATT GTATA AATGAATCAGTCCTGGCCTTATATG AGGTTGTTTTGCTTT TERM 1281 1117632 - 1117582 - f 81 -10.7 -2.91274 | opp_overlap 1117579 1117578 1117587 1117626, overlap 1117580 1117584 1117587 TCCATGTTAAGGACA TATAAGACTAGGAGTGGTTCATT GTATA AATGAATCAGTCCTGGCCTTATA TGAGGTTGTTTTGCT TERM 1282 1117630 - 1117584 - f 74 -8.9 -3.00774 | opp_overlap 1117579 1117578 1117587 1117626, overlap 1117582 1117580 1117587 CATGTTAAGGACATA TAAGACTAGGAGTGGTTCATT GTATA AATGAATCAGTCCTGGCCTTA TATGAGGTTGTTTTG TERM 1283 1117587 - 1117627 + F 73 -8.4 -3.53307 | opp_overlap 1117587 1117584 1117582 1117580, overlap 1117579 1117578 1117626 GTTAAGGACATATAA GACTAGGAGTGGTTCATT GTATA AATGAATCAGTCCTGGCC TTATATGAGGTTGTT TERM 1284 1118189 - 1118170 - g 70 -6.4 -4.15543 | GAAACAGTTGTAAAA GCGTTATG TCTT CATATCGC ACACGATTGTAATCT Cphy_0871 1117774 - 1119243 + | radical SAM domain-containing protein Cphy_0872 1119304 - 1119924 + | methyltransferase type 12 Cphy_0873 1120236 - 1120874 + | hypothetical protein TERM 1285 1121027 - 1120977 - T 100 -15.7 -3.741 | opp_overlap 1120982, overlap 1120982 CTAAGAGTTAAAATA CAAAAGTGCATCGGAAGAAGTCA TTAGT TGACTAACTCCGATGCACTTTTA GCTATAAGAAATACA TERM 1286 1120982 - 1121022 + T 100 -11.2 -4.2349 | opp_overlap 1120977 1120982 AGTTAAAATACAAAA GTGCATCGGAAGAAGTCA TTAGT TGACTAACTCCGATGCAC TTTTAGCTATAAGAA TERM 1287 1121022 - 1120982 - T 100 -13.4 -4.90471 | opp_overlap 1120982, overlap 1120977 AGTTAAAATACAAAA GTGCATCGGAAGAAGTCA TTAGT TGACTAACTCCGATGCAC TTTTAGCTATAAGAA Cphy_0874 1123458 - 1121176 - | hypothetical protein TERM 1288 1121512 - 1121545 + g 73 -6.8 -4.26903 | opp_overlap 1121522 ATTATCGAACAGATT TGGCAGAGTACTTC CAGTAA GAAGTGCTTTGACA TTTTGATAAGCTAAA TERM 1289 1123036 - 1123017 - G 74 -4.3 -4.91511 | ATCGCATTACAAAAA CATCAGC TGGTGT ACTGATG AGATGTTCCCGTATA TERM 1290 1124370 - 1124360 - g 70 -6.8 -4.07306 | ACATGCAATTACAAA CCCA GAG TGGG CGTACTTAGATGAAC TERM 1291 1124673 - 1124658 - g 81 -4 -5.54264 | overlap 1124660 AAAGATGGAAAAAAA CAGCTT TCCG AAGCTA CCCTTTTATATTATG TERM 1292 1125558 - 1125576 + G 73 -6 -4.4458 | ACTAATTGGCATTCC CTTGGTCA GCT TGATCGAG TTTATTATCTATGTG Cphy_0875 1123806 - 1125716 + | glycoside hydrolase family protein Cphy_0876 1125956 - 1127734 + | single-stranded-DNA-specific exonuclease RecJ Cphy_0877 1127968 - 1128282 + | hypothetical protein TERM 1293 1128375 - 1128330 - T 93 -9.1 -4.84017 | opp_overlap 1128333, overlap 1128331 1128333 AATTTGGTATAAAAA GTAGCAGGCATCTCTAGGAAA TCAA TTTCCTAAAGGTACCTGCTTT TTTATTTTTTTATTA TERM 1294 1128374 - 1128331 - T 91 -12.6 -3.49687 | opp_overlap 1128333, overlap 1128330 1128333 ATTTGGTATAAAAAG TAGCAGGCATCTCTAGGAAA TCAA TTTCCTAAAGGTACCTGCTT TTTTATTTTTTTATT TERM 1295 1128333 - 1128372 + T 100 -13 -6.12458 | opp_overlap 1128333 1128331 1128330 TTGGTATAAAAAGTA GCAGGCATCTCTAGGAAA TCAA TTTCCTAAAGGTACCTGC TTTTTTATTTTTTTA TERM 1296 1128372 - 1128333 - T 100 -15.2 -3.31915 | opp_overlap 1128333, overlap 1128331 1128330 TTGGTATAAAAAGTA GCAGGCATCTCTAGGAAA TCAA TTTCCTAAAGGTACCTGC TTTTTTATTTTTTTA Cphy_0878 1129267 - 1128407 - | hypothetical protein TERM 1297 1128564 - 1128585 + g 85 -3.8 -5.61596 | gap 1, opp_overlap 1128567, overlap 1128567 CAGTTAATCGCTAAG TCA-CCTTG TACTC CAAGGATGA TTTTTTTATAAAAGT Cphy_0879 1129734 - 1130480 + | tRNA pseudouridine synthase A Cphy_0880 1130690 - 1131088 + | NUDIX hydrolase TERM 1298 1131202 - 1131184 - g 76 -3.1 -5.28778 | AGTATTGATAAAAAA CGGGT TTATACTGG ACCCG GCAACAAAAACAGAA Cphy_0881 1131164 - 1132444 + | dihydroorotase, multifunctional complex type Cphy_0882 1132706 - 1133635 + | orotidine 5'-phosphate decarboxylase Cphy_0883 1133655 - 1135010 + | MATE efflux family protein TERM 1299 1135075 - 1135101 + T 100 -18.2 -3.61398 | opp_overlap 1135075 1135081, overlap 1135081 CGTTAATACATGAAA GAAAAAGCTCGC CAA GCGAGCTTTTTC TTATTAAAGAGCACC TERM 1300 1135101 - 1135075 - T 100 -18.2 -3.93262 | opp_overlap 1135075 1135081, overlap 1135081 CGTTAATACATGAAA GAAAAAGCTCGC CAA GCGAGCTTTTTC TTATTAAAGAGCACC TERM 1301 1135081 - 1135095 + T 100 -11.4 -5.29445 | opp_overlap 1135075 1135081, overlap 1135075 TACATGAAAGAAAAA GCTCGC CAA GCGAGC TTTTTCTTATTAAAG TERM 1302 1135095 - 1135081 - T 100 -11.4 -5.35815 | opp_overlap 1135081 1135075, overlap 1135075 TACATGAAAGAAAAA GCTCGC CAA GCGAGC TTTTTCTTATTAAAG Cphy_0884 1135951 - 1135340 - | SNARE associated Golgi protein TERM 1303 1135869 - 1135852 - G 70 -8.5 -3.30767 | overlap 1135855 CAGAAAAAGGTAAGA CAATCTC GCTA GAGATTG GAAAGCAACCGTATT TERM 1304 1135939 - 1135915 - G 71 -5.1 -4.6856 | GAAACATGGCAAAAA GTCCATTTT CATAGAT AAAACGGAC AACAGAATCCATAAG Cphy_0885 1136104 - 1137153 + | competence protein-like protein Cphy_0886 1137184 - 1138152 + | hypothetical protein TERM 1305 1138203 - 1138250 + T 79 -8.2 -4.02132 | gap 1, opp_overlap 1138214, overlap 1138214 CTGATGAGAAATCCA TGCCATAAAAATAGAAAGTTC AAAGTAC GAGCTTTCTATTTTTATG-TA TTTATAAATTTAAGG TERM 1306 1138214 - 1138240 + T 83 -6 -5.1634 | opp_overlap 1138214, overlap 1138203 TCCATGCCATAAAAA TAGAAAGTTC AAAGTAC GAGCTTTCTA TTTTTATGTATTTAT TERM 1307 1138240 - 1138214 - T 70 -4.5 -4.85599 | opp_overlap 1138203 1138214 TCCATGCCATAAAAA TAGAAAGTTCA AAGTA CGAGCTTTCTA TTTTTATGTATTTAT Cphy_0887 1138560 - 1138291 - | hypothetical protein Cphy_0888 1139820 - 1138603 - | hypothetical protein TERM 1308 1139966 - 1139929 - R 74 -5.2 -4.89393 | gap 3, opp_overlap 1139936 TAAAGGTCATAAAAA TAGACCGCAGGTTCTTACA TGG TGTAAGA---TGCGGTCTA TAAAAATCTAATTCG Cphy_0889 1140453 - 1139974 - | S-ribosylhomocysteinase Cphy_0891 1141276 - 1141920 + | hydrolase TERM 1309 1142968 - 1142958 - g 76 -6.8 -4.36596 | overlap 1142950 TGTAGAAGCAAGAAA TCGC TGC GCGA AAGAGGTATATTTTA Cphy_0892 1142074 - 1143030 + | D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding Cphy_0893 1144637 - 1143168 - | catalase TERM 1310 1144657 - 1144670 + r 77 -3.8 -5.36314 | opp_overlap 1144657 ATCCCCTTAAAACAT GGCT GTGGAA AGCC TTTTTTACTATTTTA TERM 1311 1144859 - 1144822 - R 100 -10.1 -5.14894 | gap 1, opp_overlap 1144822 AAAAAATGAGAAAAA GCTGATCGAACGACATTA TCA TGAT-TCGTTCAATCAGC TTAAATTGTGTTATT TERM 1312 1144822 - 1144859 + r 82 -10.1 -3.30821 | gap 1, opp_overlap 1144822 AAAAAATGAGAAAAA GCTGATCGAACGACATTA TCA TGAT-TCGTTCAATCAGC TTAAATTGTGTTATT Cphy_0894 1145986 - 1144874 - | extracellular solute-binding protein Cphy_0895 1146823 - 1146011 - | ornithine carbamoyltransferase TERM 1313 1146239 - 1146227 - G 73 -6.3 -4.44667 | GTGTGTAATAATAAA GTCAT CTA ATGAC ATAGTAAAAGCTAAT Cphy_0896 1147710 - 1146817 - | binding-protein-dependent transport systems inner membrane component TERM 1314 1147127 - 1147145 + g 95 -10.4 -4.61633 | AGGTCACGAGCAGCA TTGATGAC ATT GTCATCAA TTTTTGCAAGTGTAT Cphy_0897 1148779 - 1147703 - | spermidine/putrescine ABC transporter ATPase subunit TERM 1315 1148320 - 1148308 - G 72 -7.7 -3.8211 | opp_overlap 1148292 1148286 1148308 1148307, overlap 1148292 1148290 1148286 GCTCATCTAGAAGAA GAACC TTT GGTTC ATTTACGATAGCACG TERM 1316 1148722 - 1148737 + g 72 -4 -4.96657 | opp_overlap 1148710, overlap 1148710 AATCGTCGATTACAA CGTTAT TTCC ATAGCG TTTTGTTATATTTAT Cphy_0898 1149330 - 1148791 - | XRE family transcriptional regulator TERM 1317 1149414 - 1149400 - H 76 -8.6 -3.42359 | overlap 1149398 ATGAAAAGGATAAGA GTGCAA TTT TTGCAC CGGTATTGTAATCTT Cphy_0899 1149784 - 1150539 + | hypothetical protein Cphy_0900 1152709 - 1150709 - | ABC transporter related TERM 1318 1152799 - 1152765 - H 83 -9.6 -3.87364 | overlap 1152766 1152789 TTCACAATAATATAA CTTATCAGAAGTTT GCTTTAT AAACTTCTGATAAA AGGTGCGCACTTTGC TERM 1319 1152798 - 1152766 - H 83 -10.9 -2.91696 | overlap 1152765 1152789 TCACAATAATATAAC TTATCAGAAGTTT GCTTTAT AAACTTCTGATAA AAGGTGCGCACTTTG TERM 1320 1152895 - 1152861 - H 82 -9.6 -3.7511 | opp_overlap 1152847, overlap 1152862 1152885 GTTCCGATAATATAA CTTATCAGAAGTTT GCTTTTT AAACTTCTGATAAA AGGTGCGCACTTTGC TERM 1321 1152894 - 1152862 - H 83 -10.9 -2.84745 | opp_overlap 1152847, overlap 1152861 1152885 TTCCGATAATATAAC TTATCAGAAGTTT GCTTTTT AAACTTCTGATAA AAGGTGCGCACTTTG TERM 1322 1153001 - 1152970 - H 81 -4.6 -5.4505 | CTTGTGAATAAAAAA GCAAAATGAAGT TTATAAGT ATTTCATTTTGC ATGATAAGAAGACAA Cphy_0901 1153271 - 1153918 + | redox-sensing transcriptional repressor Rex TERM 1323 1154125 - 1154108 - g 72 -8.5 -3.53444 | TGAGTCTTCGTCAAA TCTTTCG AAAT CGAAAGA TTCCAATAGTAACAC Cphy_0902 1153915 - 1154682 + | hypothetical protein Cphy_0903 1154707 - 1155075 + | holo-acyl-carrier-protein synthase TERM 1324 1155152 - 1155138 - g 71 -4.3 -4.84914 | ACTTAGATAAGAAAA CAATC GAGCA GATTG GAATTCCAGCAATGG TERM 1325 1155925 - 1155948 + G 79 -7.4 -4.42062 | opp_overlap 1155918 1155914 1155910 GAAGGCAATTCCTGT GCTTCAGGGA ATGC TTCCGGAAGC TTTGTTTGCAGCCTA TERM 1326 1156441 - 1156415 - g 72 -9.4 -2.58714 | overlap 1156411 CGTTATATCAATGTA TCCGGTACCCAT GGA ATGGCGACCGGA GGCAGCGGCGATGCA Cphy_0904 1155089 - 1156636 + | carbohydrate kinase, YjeF related protein TERM 1327 1157195 - 1157184 - g 77 -3 -5.42862 | opp_overlap 1157184 ACATCGGCAAAAAAA CAAT TTGA ATTG TTTACAGCCTTTGTT TERM 1328 1157514 - 1157547 + G 77 -9.7 -3.16055 | gap 1, overlap 1157518 TATGGGGATGGTTTT CCAAGACAGCTGTCAA ATG TTGGCAGA-GTCTTGG TTCATGGAGAATTTG Cphy_0905 1156629 - 1157798 + | alanine racemase Cphy_0906 1157877 - 1158278 + | transcriptional modulator of MazE/toxin, MazF TERM 1329 1158559 - 1158538 - f 82 -9.5 -3.6018 | gap 1, opp_overlap 1158538 1158537 1158536 TAATAGATGACACAA GGCAAGC-TG GGA CACGCTTGCC AATTTTTAAAATTAG TERM 1330 1158538 - 1158559 + F 74 -9.5 -2.63289 | gap 1, opp_overlap 1158538, overlap 1158537 1158536 TAATAGATGACACAA GGCAAGC-TG GGA CACGCTTGCC AATTTTTAAAATTAG TERM 1331 1159482 - 1159498 + G 86 -9.5 -4.21607 | overlap 1159474 1159479 1159470 ACAGTGCTCTTTGTA TCGAAGA TGC TCTTCGA TTTATGTTAGATGAG Cphy_0907 1158767 - 1160230 + | hypothetical protein TERM 1332 1160242 - 1160271 + F 100 -13.1 -4.78077 | ATAATTAATTTTATT GGAGTTTTACAGT TTTT ATTGTAAAACTCC TTTCTTTTGCTTAAG TERM 1333 1160300 - 1160330 + F 86 -11.3 -2.54687 | opp_overlap 1160305, overlap 1160305 AGATTTTGATAAAAC AAAAAGGCAAGCA GGGGA TGCTTGCCTTTTG CTTAGTAATGCTTGA TERM 1334 1160325 - 1160305 - f 100 -11.2 -5.54907 | opp_overlap 1160305 1160300 TTGATAAAACAAAAA GGCAAGCA GGGGA TGCTTGCC TTTTGCTTAGTAATG TERM 1335 1160305 - 1160325 + F 100 -11.2 -4.46615 | opp_overlap 1160305, overlap 1160300 TTGATAAAACAAAAA GGCAAGCA GGGGA TGCTTGCC TTTTGCTTAGTAATG TERM 1336 1160665 - 1160647 - f 87 -5.3 -5.65513 | opp_overlap 1160647 TAGTAACGAAAAAAA CCTTAGC GGTTA ACTAAGG CTTTTTTATATATTA TERM 1337 1161601 - 1161587 - g 73 -7.2 -4.12456 | opp_overlap 1161586 1161587 ATATTATGTCGAAAA GGTTAA AAA TTAACC GTTTTGTAACCAATA Cphy_0908 1161112 - 1161885 + | hypothetical protein TERM 1338 1162309 - 1162295 - g 70 -6.4 -4.10453 | TAAATTCTTTCAAAA GCCTCT AAT AAAGGC TGGGGTATGCGAAGT Cphy_0909 1161882 - 1162484 + | hypothetical protein Cphy_0910 1162542 - 1163021 + | hypothetical protein TERM 1339 1163094 - 1163117 + F 73 -4.6 -5.09225 | opp_overlap 1163092 1163094 CATATAGAAGGAAGA GGATCAAGTA GAGA TACTTAGTCC TTTTTTGCGTAGGAT TERM 1340 1163564 - 1163538 - g 76 -9.6 -3.35531 | opp_overlap 1163540, overlap 1163536 1163540 1163541 GAGCAAAAAGAGATA CACTTTGTCTTC TCA GAAGACAAAATA TTGAATGAGCATATC TERM 1341 1163562 - 1163540 - g 77 -10 -3.22584 | opp_overlap 1163540, overlap 1163538 1163536 1163541 GCAAAAAGAGATACA CTTTGTCTTC TCA GAAGACAAAA TATTGAATGAGCATA TERM 1342 1163561 - 1163541 - g 77 -11.3 -2.52466 | opp_overlap 1163540, overlap 1163540 1163538 1163536 CAAAAAGAGATACAC TTTGTCTTC TCA GAAGACAAA ATATTGAATGAGCAT Cphy_0911 1163265 - 1163804 + | hypothetical protein TERM 1343 1163851 - 1163824 - f 77 -10 -2.50021 | opp_overlap 1163826, overlap 1163823 1163821 GAAAATATAAATGAT TAGGATTGAATC GAGT GATTCAATCCTT TTTTTGGCAGGTACA TERM 1344 1163826 - 1163849 + F 100 -12.6 -5.41143 | opp_overlap 1163824 1163823 1163821 AAATATAAATGATTA GGATTGAATC GAGT GATTCAATCC TTTTTTTGGCAGGTA Cphy_0912 1164154 - 1164624 + | ECF subfamily RNA polymerase sigma-24 factor Cphy_0913 1164629 - 1165360 + | hypothetical protein Cphy_0914 1165361 - 1166233 + | ABC transporter related Cphy_0915 1166236 - 1167501 + | hypothetical protein Cphy_0916 1167513 - 1168667 + | hypothetical protein TERM 1345 1168718 - 1168676 - f 100 -12.4 -3.95852 | AGGGTAGTAAGTAAA TCCTACGAAATC-ATGCCGT TGCTG ACGG-ATAGATTTCGTAGGA AGTGGATGGTTATAC TERM 1346 1168999 - 1169023 + F 74 -6.6 -4.22346 | TGAAACCTATGCATT TCTTTTGCAA CTATA TTGTAAAAGA TTTTAAATAACTTTA Cphy_0917 1169148 - 1169756 + | hypothetical protein TERM 1347 1169976 - 1169919 - T 86 -11.5 -2.5088 | opp_overlap 1169924, overlap 1169924 1169936 AGGAAGTAAAATCAG TACAACTCTCCTTTAAACACGATACGG TGAA CCGTATCATAAGTAACGGAGAGTTTTA CTGCTTTTGGAAAAA TERM 1348 1169924 - 1169971 + T 78 -7 -4.42667 | opp_overlap 1169919 1169924 1169936 GTAAAATCAGTACAA CTCTCCTTTAAACACGATACGG TGAA CCGTATCATAAGTAACGGAGAG TTTTACTGCTTTTGG TERM 1349 1169971 - 1169924 - T 90 -11.4 -3.52111 | opp_overlap 1169924, overlap 1169919 1169936 GTAAAATCAGTACAA CTCTCCTTTAAACACGATACGG TGAA CCGTATCATAAGTAACGGAGAG TTTTACTGCTTTTGG TERM 1350 1169959 - 1169936 - T 73 -8.2 -3.53761 | opp_overlap 1169924, overlap 1169924 1169919 CAACTCTCCTTTAAA CACGATACGG TGAA CCGTATCATA AGTAACGGAGAGTTT TERM 1351 1170020 - 1169992 - T 100 -11.8 -4.56597 | opp_overlap 1169990 CTGCTTTTGGAAAAA GAGACGGTGG TTTCGAATC CCACCGTCTC CGCTTAGTATCATTA TERM 1352 1170036 - 1170059 + T 100 -7.4 -5.54264 | CGCTTAGTATCATTA GTCTCAACCT TTAG GGGTTGGGGC TTTTTTTGGCTCTTT TERM 1353 1170076 - 1170120 + T 93 -11.5 -3.63589 | overlap 1170080 1170084 TTTTTTGGCTCTTTG TCAAGTCTTGGGGTGGGATTC ACG GAATCCCGCTCCATTACTTCA TTTAGAGCTATTTTA TERM 1354 1170080 - 1170116 + T 91 -12.3 -3.52472 | overlap 1170076 1170084 TTGGCTCTTTGTCAA GTCTTGGGGTGGGATTC ACG GAATCCCGCTCCATTAC TTCATTTAGAGCTAT TERM 1355 1170084 - 1170112 + T 100 -16.1 -3.5013 | overlap 1170080 1170076 CTCTTTGTCAAGTCT TGGGGTGGGATTC ACG GAATCCCGCTCCA TTACTTCATTTAGAG Cphy_0918 1171381 - 1170206 - | transposase IS204/IS1001/IS1096/IS1165 family protein TERM 1356 1170390 - 1170403 + g 78 -6.7 -4.69464 | opp_overlap 1170389 1170390, overlap 1170400 GCACAGTTCTCAAAT TCAGG TATT CCTGA TTTTTCAGCTGTTTT Cphy_0919 1171893 - 1173095 + | hypothetical protein Cphy_0920 1173304 - 1174317 + | hypothetical protein TERM 1357 1174595 - 1174616 + F 100 -10.9 -5.24129 | opp_overlap 1174594 GTTTGGGAAGATTAG TCCCAACCT GAAA GGGTTGGGA TTTTTTATGCGAGAA Cphy_0921 1174857 - 1175444 + | hypothetical protein TERM 1358 1175682 - 1175666 - f 91 -5.3 -5.72622 | opp_overlap 1175677 1175681, overlap 1175673 TTTACAAAGAAAAAA TATAAAA TTA TTTTATA AGATACTTATGGATT Cphy_0923 1175807 - 1177324 + | hypothetical protein Cphy_0924 1177514 - 1178329 + | hypothetical protein TERM 1359 1178459 - 1178401 - f 91 -5.5 -5.83822 | gap 1, opp_overlap 1178402 1178407, overlap 1178402 1178407 TACATGTAAAAAAAA GTAAAACTCTCCTTTCAACACGATACGG TGAA CCGTACCATAAGTAAAGGAGAGTCTTA- CTATTTTAGGAAGAG TERM 1360 1178459 - 1178402 - f 100 -11.5 -4.08666 | opp_overlap 1178402 1178407, overlap 1178401 1178407 ACATGTAAAAAAAAG TAAAACTCTCCTTTCAACACGATACGG TGAA CCGTACCATAAGTAAAGGAGAGTCTTA CTATTTTAGGAAGAG TERM 1361 1178454 - 1178407 - f 95 -9.2 -4.99665 | opp_overlap 1178402 1178407, overlap 1178401 1178402 TAAAAAAAAGTAAAA CTCTCCTTTCAACACGATACGG TGAA CCGTACCATAAGTAAAGGAGAG TCTTACTATTTTAGG TERM 1362 1178507 - 1178542 + F 91 -5.6 -5.84381 | CCCACCGTCTCCGCA GATTATCTTATAATGT GAAA ACATTGTGGGGTAGTC TTTTTTTGTTGGTGG Cphy_0925 1178997 - 1180382 + | hypothetical protein Cphy_0926 1180801 - 1180953 + | hypothetical protein Cphy_0927 1181187 - 1181795 + | hypothetical protein TERM 1363 1182165 - 1182203 + T 93 -9.2 -4.77896 | opp_overlap 1182167 GATACGAGTTGAATG TAGACAATATATCTGG AGTTCTA TTAGATATATTGTCTA TTTTTACGTTGGTTG Cphy_0928 1184572 - 1182272 - | AraC family transcriptional regulator TERM 1364 1183832 - 1183850 + g 84 -4.6 -5.42862 | GGAAATAGAGGATGG GCTTTTTT CCA AGAGAAGC TTTTTTTCAGAGTCT TERM 1365 1184403 - 1184414 + g 74 -3 -5.29716 | AGAAACTGTTGGTTG GATT CAAT AATC TTTTTATTATATTCG Cphy_0929 1184776 - 1185768 + | binding-protein-dependent transport systems inner membrane component Cphy_0930 1185782 - 1186666 + | binding-protein-dependent transport systems inner membrane component Cphy_0931 1186734 - 1188368 + | extracellular solute-binding protein TERM 1366 1188387 - 1188438 + F 75 -9.5 -2.89881 | opp_overlap 1188388 1188390, overlap 1188390 1188392 1188396 TAAATATAACAAGAA ATAGACAGAGCTTTCACAGAACG GCAATA CGTACTGTGCAGGCTTTGTCTGC TATATGGGATGAATG TERM 1367 1188437 - 1188388 - f 76 -6.4 -4.58859 | opp_overlap 1188387 1188390 1188392 1188396, overlap 1188390 AAATATAACAAGAAA TAGACAGAGCTTTCACAGAACG GCAATA CGTACTGTGCAGGCTTTGTCTG CTATATGGGATGAAT TERM 1368 1188435 - 1188390 - f 81 -9 -3.87147 | opp_overlap 1188387 1188390 1188392 1188396, overlap 1188388 ATATAACAAGAAATA GACAGAGCTTTCACAGAACG GCAATA CGTACTGTGCAGGCTTTGTC TGCTATATGGGATGA TERM 1369 1188390 - 1188435 + F 100 -13.4 -2.69799 | opp_overlap 1188390 1188388, overlap 1188387 1188392 1188396 ATATAACAAGAAATA GACAGAGCTTTCACAGAACG GCAATA CGTACTGTGCAGGCTTTGTC TGCTATATGGGATGA TERM 1370 1188392 - 1188433 + F 79 -10.2 -2.89177 | opp_overlap 1188390 1188388, overlap 1188390 1188387 1188396 ATAACAAGAAATAGA CAGAGCTTTCACAGAACG GCAATA CGTACTGTGCAGGCTTTG TCTGCTATATGGGAT TERM 1371 1188396 - 1188429 + F 74 -7.4 -4.12475 | opp_overlap 1188390 1188388, overlap 1188392 1188390 1188387 CAAGAAATAGACAGA GCTTTCACAGAACG GCAATA CGTACTGTGCAGGC TTTGTCTGCTATATG TERM 1372 1188546 - 1188512 - g 82 -7.8 -4.37013 | opp_overlap 1188523 AAGCAATGAGCAAAA TGTGCGAGAAAGCAGC GAT GCAGCCTTTTCGAACA CATGAATATCGGAAT TERM 1373 1189990 - 1189974 - g 71 -9.5 -2.52516 | overlap 1189973 CGGTGCAGGAGTAAT CCGTAAA GAA TTTACGG TAGAAATGTGTGGAA Cphy_0932 1188484 - 1190736 + | polysaccharide lyase family protein 8 Cphy_0933 1190798 - 1191850 + | hypothetical protein TERM 1374 1192102 - 1192087 - g 76 -4.7 -4.98672 | opp_overlap 1192087 TCCAAAAACAGAAAA TGTGG AATGGA CCACA GGTTTTTGGACGGGG TERM 1375 1192320 - 1192304 - g 73 -6.5 -4.27007 | opp_overlap 1192292, overlap 1192293 GAAACAGCTAAGAAA GCTGCTA TAA TGGCAGC AGATAATCTAATGGA Cphy_0934 1191923 - 1193098 + | glycosy hydrolase family protein Cphy_0935 1193390 - 1195306 + | HD superfamily phosphohydrolase-like protein Cphy_0936 1195303 - 1195659 + | hypothetical protein Cphy_0937 1196101 - 1197840 + | ABC transporter related TERM 1376 1198234 - 1198264 + F 100 -10.5 -5.77856 | overlap 1198223 ACCGCGGTAGGTTTA TCCTTTCGTCTCT TTATT GGAGGCGAAGGGA TTTTTTTAATTTATT Cphy_0938 1198305 - 1200728 + | leucyl-tRNA synthetase TERM 1377 1200853 - 1200806 - f 100 -20.2 -3.80745 | opp_overlap 1200806 AAGACAAGATGTAAA CTCTCCTTTATTTATGTTACGG TGAA CCGTACCATAAGTAAAGGAGAG TTTTACTGATTTTGA TERM 1378 1200806 - 1200853 + F 100 -22.4 -4.42667 | opp_overlap 1200806 AAGACAAGATGTAAA CTCTCCTTTATTTATGTTACGG TGAA CCGTACCATAAGTAAAGGAGAG TTTTACTGATTTTGA TERM 1379 1200911 - 1200872 - f 84 -11 -3.04461 | TACTGATTTTGAATA CTCTGTCTATGAAAGC GAAAAGAT ACTTTCATAGACAGAA AAAAGAAGTTAGGGA TERM 1380 1204990 - 1204970 - g 81 -5.5 -5.10461 | opp_overlap 1204988, overlap 1204972 GGTATCTAATAAAAA TAGTTACTA TTT TAGTAACGA CGGCGTTGTATATCA TERM 1381 1204988 - 1204972 - g 79 -8.1 -4.17914 | overlap 1204970 TATCTAATAAAAATA GTTACTA TTT TAGTAAC GACGGCGTTGTATAT Cphy_0939 1201209 - 1205180 + | hypothetical protein TERM 1382 1205316 - 1205345 + F 100 -9.5 -5.24531 | opp_overlap 1205321 TGAAAGAGTGCAGGA TGAGATACTATCT TTAG AGATGGTATCTTA TTTTTTGTGAGGAAT Cphy_0940 1205467 - 1205925 + | ECF subfamily RNA polymerase sigma-24 factor Cphy_0941 1205922 - 1206647 + | hypothetical protein Cphy_0944 1207442 - 1208062 + | hypothetical protein TERM 1383 1211796 - 1211812 + G 74 -8.1 -3.78909 | AAATTGTCGCTAAGC CTAGAAT CTG ATTCTAG TTGGTTTTCTAATTG TERM 1384 1212133 - 1212113 - g 100 -11.3 -5.81412 | opp_overlap 1212131 GGTATCTAAAAAAAA TCGTTACTA TTA TAGTAACGA CGGCGTTGTATATCA Cphy_0945 1208352 - 1212347 + | hypothetical protein TERM 1385 1212739 - 1212775 + F 100 -7.6 -5.36314 | gap 1, opp_overlap 1212745 1212747, overlap 1212745 TAGTGAAAGAGTGCA GAATGA-GATACTATCT TTAG AGATGGTATCTTTATTC TTTTTTAGTATTTTC TERM 1386 1212745 - 1212768 + F 93 -9 -4.84182 | opp_overlap 1212745 1212747, overlap 1212739 AAGAGTGCAGAATGA GATACTATCT TTAG AGATGGTATC TTTATTCTTTTTTAG Cphy_0946 1212923 - 1213483 + | ECF subfamily RNA polymerase sigma-24 factor Cphy_0947 1213480 - 1214445 + | hypothetical protein TERM 1387 1214586 - 1214563 - T 100 -14 -4.44548 | opp_overlap 1214563 GATATTTAACTAAAA GTCCCAATTC GTTT GAATTGGGAC TTTTTTAGCGTTCCG TERM 1388 1214563 - 1214586 + T 100 -14 -5.09426 | opp_overlap 1214563 GATATTTAACTAAAA GTCCCAATTC GTTT GAATTGGGAC TTTTTTAGCGTTCCG Cphy_0948 1214853 - 1214641 - | hypothetical protein TERM 1389 1214950 - 1214990 + H 100 -8 -5.40072 | gap 2, opp_overlap 1214950 1214953 TAGCGAATAGTAGAA TAAGGGTATAATTCGTTCTG AAT CAGAA-GAAT-ATATCCTTA TTTTTTTACCAACAA Cphy_0949 1215221 - 1215385 + | lactoylglutathione lyase Cphy_0950 1215463 - 1215990 + | GCN5-related N-acetyltransferase Cphy_0951 1216038 - 1216271 + | hypothetical protein Cphy_0952 1216313 - 1216840 + | GCN5-related N-acetyltransferase Cphy_0953 1216928 - 1217344 + | hypothetical protein Cphy_0954 1217507 - 1217698 + | XRE family transcriptional regulator TERM 1390 1217813 - 1217837 + F 71 -2.2 -5.36441 | gap 1 ACTTTGTGTTGATTA GTCT-CAATGC GATT GGATTGGAGAC TTTTTTCTATAAAAA Cphy_0955 1217945 - 1218907 + | xylose isomerase domain-containing protein TERM 1391 1219269 - 1219298 + F 100 -15.9 -5.93252 | opp_overlap 1219266 CGGACAGAATAGTTC GCCCTAAGCTAAT CTTT ATTAGCTTGGGGC TTTTTTGTTTTTAAG Cphy_0956 1219342 - 1221117 + | alanyl-tRNA synthetase TERM 1392 1221418 - 1221436 + F 77 -3.1 -5.60993 | TACTGTTGACTACGG GACGCAT GTTTG GTGTGTC TTTTTTTGTGCGCGA TERM 1393 1221455 - 1221494 + F 100 -16.8 -4.87665 | opp_overlap 1221455 TTTTGTGCGCGAAAA TAGCCATAACAAGTAG AGATGAAG CTACTTGTTATGGCTA TTTTTATGCCTAAAA TERM 1394 1221494 - 1221455 - f 100 -16.8 -4.07568 | opp_overlap 1221455 TTTTGTGCGCGAAAA TAGCCATAACAAGTAG AGATGAAG CTACTTGTTATGGCTA TTTTTATGCCTAAAA Cphy_0957 1221625 - 1223472 + | ATPase of the ABC class-like protein TERM 1395 1223602 - 1223639 + F 100 -10.9 -4.2231 | opp_overlap 1223602 1223605, overlap 1223605 AAAAAAATTTAGAAA TAGGCTTATATAGATGT TATT GCATTTATATAAGCTTA TTTTGGATAATAATT TERM 1396 1223605 - 1223636 + F 95 -10.4 -4.22883 | opp_overlap 1223602 1223605, overlap 1223602 AAAATTTAGAAATAG GCTTATATAGATGT TATT GCATTTATATAAGC TTATTTTGGATAATA TERM 1397 1224736 - 1224726 - g 70 -3.2 -5.00642 | GAATTTATAGAAAAA GCAA TTG CTGC TTTTGAAAAAGTAAA Cphy_0958 1223811 - 1225289 + | aldehyde dehydrogenase TERM 1398 1225369 - 1225426 + T 83 -5.7 -5.20333 | opp_overlap 1225370 1225380, overlap 1225380 ATCAAAGTAAAAAAA ACTGTAAAAAATCAGGGAAGAATTTCG TTAG CGATTTTCTTCCCTGATTTTATGTAAA TTTTTCTTATACCTA TERM 1399 1225425 - 1225370 - T 100 -7 -6.02546 | opp_overlap 1225369 1225380, overlap 1225380 TCAAAGTAAAAAAAA CTGTAAAAAATCAGGGAAGAATTTCG TTAG CGATTTTCTTCCCTGATTTTATGTAA ATTTTTCTTATACCT TERM 1400 1225380 - 1225415 + T 100 -13.4 -4.59984 | opp_overlap 1225370 1225380, overlap 1225369 AAAAACTGTAAAAAA TCAGGGAAGAATTTCG TTAG CGATTTTCTTCCCTGA TTTTATGTAAATTTT TERM 1401 1225415 - 1225380 - T 100 -13.4 -5.16472 | opp_overlap 1225380 1225369, overlap 1225370 AAAAACTGTAAAAAA TCAGGGAAGAATTTCG TTAG CGATTTTCTTCCCTGA TTTTATGTAAATTTT Cphy_0959 1226627 - 1225473 - | hypothetical protein TERM 1402 1226038 - 1226048 + g 76 -3.2 -5.30575 | ATCTTTAAATAATCG GGAG CAT CTTC TTTTTTAGCTTTTTC TERM 1403 1227560 - 1227546 - g 74 -2.8 -5.26875 | GGCGGAAGGAAAAAA TCCAGT ACA AGTGGA GCAAGAATTGATGAA Cphy_0960 1227082 - 1227720 + | DNA-(apurinic or apyrimidinic site) lyase TERM 1404 1228346 - 1228367 + F 100 -6.6 -5.84381 | opp_overlap 1228346 TATATGTTTATTAGA CCTTTTCC AAACAC GGAGAAGG TTTTTTTATTACTGA Cphy_0961 1228402 - 1230327 + | ABC transporter related TERM 1405 1230650 - 1230635 - gf 76 -3.3 -5.40625 | overlap 1230644 1230646 AGAGTATATAAAAAA TCCAA GATATA TTGGA GCAATAGCGCCAAGC Cphy_0962 1230609 - 1231184 + | hypothetical protein TERM 1406 1231792 - 1231780 - g 72 -4.1 -4.95854 | CAAAAAATTGAAAAA GATCC AAA GAATC CTGAGTATATAAAAA Cphy_0963 1231159 - 1231836 + | two component transcriptional regulator TERM 1407 1232624 - 1232644 + G 72 -7.7 -3.68761 | TATAATAAAAAATGC TGAGAAGTA TAG TATTTCTCA TTCTACTTTTAAAAT Cphy_0964 1231914 - 1232909 + | integral membrane sensor signal transduction histidine kinase Cphy_0965 1233841 - 1233227 - | putative uridine kinase TERM 1408 1234758 - 1234745 - g 73 -6.7 -4.19624 | opp_overlap 1234741 CAGTCCTAACACAAA CCAAC CAAG GTTGG AATGCTTTAGAGCTA Cphy_0966 1234462 - 1234827 + | hypothetical protein TERM 1409 1234834 - 1234877 + F 100 -13.4 -5.24796 | opp_overlap 1234836, overlap 1234836 AATAATTAGATGAGA AAGATAGGGCTGATATATCA AATT TGATGTATCGGCTCTATCTA TTTTTATTGTATGGA TERM 1410 1234875 - 1234836 - f 86 -9.4 -4.04149 | opp_overlap 1234836 1234834 TAATTAGATGAGAAA GATAGGGCTGATATATCA AATT TGATGTATCGGCTCTATC TATTTTTATTGTATG TERM 1411 1234836 - 1234875 + F 100 -16 -4.24787 | opp_overlap 1234836, overlap 1234834 TAATTAGATGAGAAA GATAGGGCTGATATATCA AATT TGATGTATCGGCTCTATC TATTTTTATTGTATG Cphy_0967 1235059 - 1235976 + | hypothetical protein TERM 1412 1236067 - 1236100 + F 100 -9.7 -4.79826 | gap 1 AAAAAATGTTAGGTA TGCCGGAGCT-CGA AATATCC TCGTAGCTTCGGCA TTTTTGATAATATGT Cphy_0968 1236682 - 1237503 + | nitroreductase TERM 1413 1237575 - 1237527 - T 82 -7.6 -4.68545 | opp_overlap 1237535 1237536, overlap 1237533 1237535 1237536 ATTCAATACAGAAAA TAATAATATGCCGAAG-CCCGAGA ATA CCCCGGGACTTCGGCGT-TTTTTA TATAATTAGGACAAC TERM 1414 1237570 - 1237533 - T 88 -9.1 -4.29348 | gap 1, opp_overlap 1237535 1237536, overlap 1237527 1237535 1237536 TACAGAAAATAATAA TATGCCGAAG-CCCGAGA ATA CCCCGGGACTTCGGCGTT TTTTATATAATTAGG TERM 1415 1237535 - 1237568 + T 100 -11 -5.42131 | gap 1, opp_overlap 1237535 1237533 1237527 1237536, overlap 1237536 CAGAAAATAATAATA TGCCGAAG-CCCGAG AATAC CCCGGGACTTCGGCG TTTTTTATATAATTA TERM 1416 1237568 - 1237535 - T 95 -11.7 -3.71944 | gap 1, opp_overlap 1237535 1237536, overlap 1237533 1237527 1237536 CAGAAAATAATAATA TGCCGAAG-CCCGAGA ATA CCCCGGGACTTCGGCG TTTTTTATATAATTA TERM 1417 1237536 - 1237567 + T 100 -12.3 -3.83652 | gap 1, opp_overlap 1237536 1237535 1237533 1237527, overlap 1237535 AGAAAATAATAATAT GCCGAAG-CCCGAG AATAC CCCGGGACTTCGGC GTTTTTTATATAATT TERM 1418 1237567 - 1237536 - T 100 -15.2 -2.81539 | gap 1, opp_overlap 1237535 1237536, overlap 1237535 1237533 1237527 AGAAAATAATAATAT GCCGAAG-CCCGAGA ATA CCCCGGGACTTCGGC GTTTTTTATATAATT Cphy_0969 1238337 - 1237636 - | hypothetical protein Cphy_0970 1239662 - 1238364 - | hypothetical protein TERM 1419 1238634 - 1238645 + g 89 -5.8 -5.42198 | overlap 1238627 AATTACTTGCTCGGT GAGC TCTT GCTC TTTTCTTTTTTGAGC TERM 1420 1238961 - 1238974 + g 76 -6.7 -4.46112 | TTGGAATGTATTTTT CTGCT CGGT AGCAG TTTGTTTCACTGGAC TERM 1421 1239357 - 1239369 + g 76 -3.4 -5.41359 | opp_overlap 1239342 TTGATAGAAAGATTC TAGC AAAGC GCTA TTTTTTAATTTGCTT Cphy_0971 1239888 - 1240298 + | AraC family transcriptional regulator Cphy_0972 1240295 - 1240876 + | endopeptidase Clp TERM 1422 1240883 - 1240916 + F 71 -3.2 -5.23016 | ATAAAATAAAGGGAG TGCCTGTAGTTG ACTTTAGTTA TGACTGCAGGCA TTTTTTGAGTTATTT Cphy_0973 1241144 - 1242187 + | alpha/beta hydrolase fold Cphy_0974 1242595 - 1243308 + | LytTR family two component transcriptional regulator Cphy_0975 1243305 - 1244033 + | signal transduction histidine kinase regulating citrate/malate metabolism TERM 1423 1244878 - 1244866 - f 71 -7.7 -3.40043 | opp_overlap 1244865 1244866, overlap 1244865 TGCAAGACATAAAAT CGTTG TGT CAACG GTTACTTGTATTAAA TERM 1424 1245221 - 1245204 - f 74 -8.5 -3.2964 | opp_overlap 1245204 1245201 AAAGCTGTGGTAGAA GTGTGAA GAAC TTCACAC TGGCTTGGTGCATTG Cphy_0978 1245274 - 1246302 + | ABC transporter related TERM 1425 1246360 - 1246377 + G 70 -3.5 -4.90917 | gap 1 GCATGGCATACCGAT TCGATCAT TGG ATGA-CGA TTTTTAGTTCAGTTT Cphy_0979 1246284 - 1247090 + | hypothetical protein TERM 1426 1247312 - 1247322 + G 75 -5.4 -4.72772 | CAGTTTTTTATTTAG TACC TAC GGTA TTTTAATTATTTTTT Cphy_0980 1247094 - 1247906 + | hypothetical protein Cphy_0981 1248022 - 1248516 + | hypothetical protein Cphy_0982 1249131 - 1249883 + | exodeoxyribonuclease III TERM 1427 1249906 - 1249939 + F 93 -9.8 -4.59773 | opp_overlap 1249904 1249902 1249906 GGGTAAGTAAATAGA GGATTACAACGA GGGTGCTTTA TCGTTGTAATCC TTTTTAAAAATAAAG TERM 1428 1249939 - 1249906 - f 78 -9.8 -3.34468 | opp_overlap 1249906, overlap 1249904 1249902 GGGTAAGTAAATAGA GGATTACAACGA GGGTGCTTTA TCGTTGTAATCC TTTTTAAAAATAAAG Cphy_0983 1250202 - 1250948 + | hypothetical protein Cphy_0984 1251218 - 1251655 + | hypothetical protein TERM 1429 1251679 - 1251703 + F 91 -7.2 -5.16572 | opp_overlap 1251678 1251679 AAGCATTCAAAAAAG GCCTAAATCA ATTAA TGATTTCGGC TTTTTTAAATTAAAT TERM 1430 1251703 - 1251679 - f 70 -7.2 -3.66486 | opp_overlap 1251679, overlap 1251678 AAGCATTCAAAAAAG GCCTAAATCA ATTAA TGATTTCGGC TTTTTTAAATTAAAT TERM 1431 1251818 - 1251808 - f 70 -4 -4.95155 | TTTATATTAGAAAAA TCAT AGC ATGA ATGAAAAGAAAGGAG Cphy_0985 1251841 - 1251975 + | hypothetical protein Cphy_0986 1252151 - 1252393 + | hypothetical protein Cphy_0987 1252420 - 1252794 + | desulfoferrodoxin ferrous iron-binding region TERM 1432 1253129 - 1253139 + F 74 -4 -5.15167 | opp_overlap 1253129 TTTTAGAGTATACGA GTTT ATG AAAC TTTTTATTAATAATA TERM 1433 1253294 - 1253282 - g 74 -7.7 -3.93691 | opp_overlap 1253279 GAATATAAAAAGCAA CATCC TGA GGATG AGGTAGTTGTATTAG Cphy_0988 1253183 - 1253779 + | NAD(P)H dehydrogenase (quinone) TERM 1434 1253827 - 1253850 + T 100 -14.6 -4.46976 | opp_overlap 1253824 1253823 1253821 1253813 ATTACAAAACACTTA CGCTGCCACG GAGA TGTGGCAGCG TTTCTATTTCTTAAT Cphy_0989 1255362 - 1253941 - | transcriptional regulator TERM 1435 1254656 - 1254645 - G 78 -5.8 -4.83169 | opp_overlap 1254645 1254643 ACGGGCTGACAAAAA CTGC TTTT GCAG TGCTTTTCCTAAGGG Cphy_0990 1255469 - 1256275 + | phosphomethylpyrimidine kinase TERM 1436 1256336 - 1256313 - f 100 -15.4 -3.49756 | opp_overlap 1256313 TAAGAATTATTAGAA GGACGAAAGC GACT GCTTTCGTCC TTTTTTTTGCAGGTG TERM 1437 1256313 - 1256336 + F 100 -15.4 -5.76949 | opp_overlap 1256313 TAAGAATTATTAGAA GGACGAAAGC GACT GCTTTCGTCC TTTTTTTTGCAGGTG Cphy_0991 1256464 - 1257372 + | helix-turn-helix type 11 domain-containing protein TERM 1438 1257374 - 1257393 + F 90 -10.8 -3.86202 | opp_overlap 1257374 GGTATCAATTTTAAA CACGACAT ACTG ATGTCGTG TTTGCTATGATAAAC TERM 1439 1257393 - 1257374 - f 89 -10.8 -3.67976 | opp_overlap 1257374 GGTATCAATTTTAAA CACGACAT ACTG ATGTCGTG TTTGCTATGATAAAC Cphy_0992 1257421 - 1257705 + | hypothetical protein Cphy_0993 1257746 - 1258468 + | hypothetical protein TERM 1440 1258503 - 1258538 + F 74 -6.8 -4.18908 | TTATGATAATCATCT CGGGAAGCTCTAACTA TTAG TTGTAGGGGCTTCTCG TTCTTTTAAGCATAT Cphy_0994 1258596 - 1258880 + | hypothetical protein Cphy_0995 1258979 - 1259263 + | hypothetical protein TERM 1441 1259314 - 1259267 - T 80 -9.5 -3.49837 | gap 1, opp_overlap 1259269, overlap 1259265 1259269 TATAGAATTTAAATA TAGCTCCTATAA-TAGTGGATT GTTTA AATCAACTACTTATAGGAGCTT TTAATTTAAGTTTAA TERM 1442 1259312 - 1259269 - T 89 -12.1 -3.31177 | gap 1, opp_overlap 1259269, overlap 1259267 1259265 TAGAATTTAAATATA GCTCCTATAA-TAGTGGATT GTTTA AATCAACTACTTATAGGAGC TTTTAATTTAAGTTT TERM 1443 1259269 - 1259312 + T 100 -12.1 -4.59424 | gap 1, opp_overlap 1259267 1259265 1259269 TAGAATTTAAATATA GCTCCTATAA-TAGTGGATT GTTTA AATCAACTACTTATAGGAGC TTTTAATTTAAGTTT Cphy_0996 1260455 - 1259490 - | alpha/beta hydrolase domain-containing protein TERM 1444 1262061 - 1262045 - g 72 -9.5 -2.68982 | opp_overlap 1262048 1262051, overlap 1262039 1262044 AGGAAAAAGCAAGAG GAATCCT TGG AGGATTC AATTAAATTAATGGA Cphy_0997 1260824 - 1262278 + | hypothetical protein TERM 1445 1262395 - 1262361 - f 72 -5.1 -4.83269 | gap 1, opp_overlap 1262363, overlap 1262363 ATATGAGATTAAAAA GATGACACGGTGATAC TTTT GTATG-CCGTGTCATT TTTCTATAATTCAAT TERM 1446 1262363 - 1262393 + F 100 -9.9 -5.04175 | gap 1, opp_overlap 1262361 1262363 ATGAGATTAAAAAGA TGACACGGTGATAC TTTT GTAT-GCCGTGTCA TTTTTCTATAATTCA TERM 1447 1262393 - 1262363 - f 77 -7.7 -4.02905 | gap 1, opp_overlap 1262363, overlap 1262361 ATGAGATTAAAAAGA TGACACGGTGATAC TTTT GTATG-CCGTGTCA TTTTTCTATAATTCA Cphy_0998 1262609 - 1263250 + | hypothetical protein TERM 1448 1263309 - 1263338 + F 100 -10.9 -6.13503 | opp_overlap 1263315 TATTAGTTTTTTTTA TAGGAATAGAGTT TCAT AACTCTACTCCTA TTTTTTTTCTTCGTA TERM 1449 1263441 - 1263400 - f 74 -7.5 -3.85505 | overlap 1263408 1263413 GTATTAATAAGAGAA CTGTAAAACACAATCGGTT GAAA AACCAATGGTATTTTATAG AATATTTTGATAAAT Cphy_0999 1263506 - 1264033 + | hypothetical protein Cphy_1000 1264310 - 1265803 + | C4-dicarboxylate anaerobic carrier TERM 1450 1266204 - 1266225 + G 73 -3.1 -5.12785 | TGTTCTGGTTCATTC CATTAGTTT CAAT AAAGTAATG TTTGTTTTTTAGTTA Cphy_1001 1265962 - 1266237 + | hypothetical protein TERM 1451 1266281 - 1266303 + F 100 -12.8 -4.16146 | opp_overlap 1266281 ATGAAAGATAAAAAA GGTCTTCACA TAG TGTGGAGACC TTTTAGAAGTATTTT TERM 1452 1266303 - 1266281 - f 100 -10.6 -5.5762 | opp_overlap 1266281 ATGAAAGATAAAAAA GGTCTTCACA TAG TGTGGAGACC TTTTAGAAGTATTTT TERM 1453 1266651 - 1266637 - g 90 -8.6 -4.66537 | opp_overlap 1266646, overlap 1266632 1266646 GTTCCTAATACAAAA CTGCAA GTA TTGCAG CAGCAATTAACTGAA Cphy_1002 1266349 - 1266879 + | 2'-5' RNA ligase TERM 1454 1267896 - 1267919 + G 79 -11.2 -3.05844 | opp_overlap 1267891 1267916, overlap 1267901 ACGGAAGATACCGAT GCTAATTTCT TATC AGAAATTAGC TCTTGGGCTACAAAA Cphy_1003 1267185 - 1268915 + | FMN-binding domain-containing protein TERM 1455 1269127 - 1269077 - f 78 -5.8 -4.90778 | gap 1, opp_overlap 1269077 1269126, overlap 1269126 CTTAGTTAAATAAAA GATTCTAACTTCTTTGGTACTAT CTTAGT ACAGTAA-AAAGTAGTTAGAATC TTTTTTTAACATAAA TERM 1456 1269077 - 1269127 + F 76 -3.6 -5.44119 | gap 1, opp_overlap 1269077 1269126, overlap 1269126 CTTAGTTAAATAAAA GATTCTAACTTCTTTGGTACTAT CTTAGT ACAGTAA-AAAGTAGTTAGAATC TTTTTTTAACATAAA Cphy_1004 1269352 - 1270377 + | ArsR family transcriptional regulator TERM 1457 1270456 - 1270514 + F 100 -35.2 -5.72622 | opp_overlap 1270475 CATAATTTATTGATA TGCTCTCCCTGATGACAAACAGTTTTAT TAT ATTAAACTGTTTGTCATCAGGGAGAGCA TTTTTTATTTATAAC Cphy_1005 1270677 - 1271450 + | ABC transporter related Cphy_1006 1271631 - 1272413 + | ABC-2 type transporter Cphy_1007 1272518 - 1273297 + | ABC-2 type transporter TERM 1458 1274013 - 1273999 - g 74 -2.9 -5.38958 | AGCGACAAAGAAAAA TTTGA GGGAT TCAAA CAAAAACTAGTAGAA Cphy_1008 1273642 - 1274403 + | MerR family transcriptional regulator TERM 1459 1274413 - 1274447 + F 100 -13.1 -3.31157 | opp_overlap 1274413 1274416 1274419 1274421, overlap 1274419 AAGTAATATGATATA TAAGGATACCGCTGA GATTA TCAGCGGTATTTTTA TTAATATCCTAATTG TERM 1460 1274447 - 1274413 - f 72 -8.7 -3.02038 | opp_overlap 1274413 1274419, overlap 1274416 1274419 1274421 AAGTAATATGATATA TAAGGATACCGCTGA GATTA TCAGCGGTATTTTTA TTAATATCCTAATTG TERM 1461 1274419 - 1274441 + F 100 -12.1 -5.16841 | opp_overlap 1274416 1274413 1274419 1274421, overlap 1274413 TATGATATATAAGGA TACCGCTGA GATTA TCAGCGGTA TTTTTATTAATATCC TERM 1462 1274441 - 1274419 - f 88 -12.1 -2.92712 | opp_overlap 1274419 1274413, overlap 1274416 1274413 1274421 TATGATATATAAGGA TACCGCTGA GATTA TCAGCGGTA TTTTTATTAATATCC TERM 1463 1274439 - 1274421 - f 83 -10.3 -3.00907 | opp_overlap 1274419 1274413, overlap 1274419 1274416 1274413 TGATATATAAGGATA CCGCTGA GATTA TCAGCGG TATTTTTATTAATAT TERM 1464 1274489 - 1274501 + F 91 -7.7 -5.14563 | opp_overlap 1274489 1274488 1274482 TTTAGAAATACAAAT GCAAG CAG CTTGC TTTTTTACTGAAGAA TERM 1465 1274713 - 1274732 + F 88 -8.6 -4.47551 | opp_overlap 1274713 CATGGTAAACAATAA GCCTATGA AATT TCATGGGC TTTTGTGCGTTGCAT TERM 1466 1274809 - 1274834 + F 100 -8.3 -5.5112 | TCTCGTAGAATCATA GTCATTTGGGC ATAT GCCTGAATGGC TTTTTTGTTGCTGCA TERM 1467 1275008 - 1274974 - g 100 -13.8 -3.6849 | overlap 1274999 ATGTAATTTTAACAA CATACCAATCTTTTGG ATT CCAAAAGATTAGCACG CCAATCATGGAAGAT Cphy_1009 1274886 - 1276127 + | histidine--tRNA ligase Cphy_1010 1276704 - 1277816 + | XRE family transcriptional regulator Cphy_1011 1278019 - 1278399 + | hypothetical protein Cphy_1012 1279747 - 1278635 - | regulatory protein GntR HTH Cphy_1013 1280007 - 1281491 + | extracellular solute-binding protein Cphy_1014 1281508 - 1282416 + | binding-protein-dependent transport systems inner membrane component Cphy_1015 1282416 - 1283258 + | binding-protein-dependent transport systems inner membrane component TERM 1468 1284257 - 1284245 - g 70 -3.3 -5.00616 | overlap 1284229 TGGGTTTTTAAAAAA TACCC ATT GGGAA GATTTAAGTTTATGT Cphy_1016 1283280 - 1284356 + | hypothetical protein TERM 1469 1285042 - 1285027 - g 70 -3.2 -5.0538 | GTCTATTTTAAAAAA GCCTGT TATC ATAGGC GAGGAAAATTTAATT Cphy_1017 1284374 - 1285231 + | hypothetical protein TERM 1470 1286350 - 1286336 - g 72 -3.6 -4.99056 | GAAGATAATGAAAAA TATGCA GAG TACATA GCAAACGTAAAGTCA Cphy_1018 1285247 - 1287442 + | hypothetical protein TERM 1471 1287546 - 1287512 - f 100 -13.8 -4.27316 | opp_overlap 1287518 TCTTGTAATTCAAAA CTGAAACTGTTAGAGA ATA CCTTTAACAGTTTCAG TAATAACTAATCGAG TERM 1472 1287518 - 1287540 + F 70 -7.1 -3.68827 | opp_overlap 1287512 AATTCAAAACTGAAA CTGTTAGAG AATAC CTTTAACAG TTTCAGTAATAACTA Cphy_1019 1287569 - 1289839 + | Kojibiose phosphorylase TERM 1473 1291038 - 1291049 + G 77 -3 -5.43866 | TAGTAACAATGTCAA TCAT CCAA ATGA TTTTTTTGCAAGTTG Cphy_1020 1289839 - 1291104 + | hypothetical protein Cphy_1021 1291233 - 1291862 + | beta-phosphoglucomutase TERM 1474 1291877 - 1291920 + F 90 -4 -5.93809 | gap 1, opp_overlap 1291893, overlap 1291878 1291919 ATATAAGATATTATG AGAAACCGTAACAGGATGTCT GTA AGACATA-TGTGATGGTTTCC TTTTTTTTATACAAA TERM 1475 1291878 - 1291919 + F 77 -7.5 -4.15201 | gap 1, opp_overlap 1291893, overlap 1291877 TATAAGATATTATGA GAAACCGTAACAGGATGTCT GTA AGACATA-TGTGATGGTTTC CTTTTTTTTATACAA TERM 1476 1292135 - 1292166 + F 80 -10.3 -2.76059 | opp_overlap 1292135, overlap 1292132 AAGTATTGATAAGAA CCGTTACAAATCA TTAACC TGGTTTGTGACGG TAAATTTATGTATTA TERM 1477 1292332 - 1292344 + G 88 -4.8 -5.6473 | AAATTAAGTGGTTTA CTCC CAATA GGAG TTTTTTTGATATTAT TERM 1478 1292476 - 1292462 - g 76 -2.1 -5.51165 | AAAACCCGAAAAAAA GCCTA AATGA TAAGC TACGTGTTGTGACAC Cphy_1022 1292305 - 1293624 + | Na+/H+ antiporter NhaC TERM 1479 1294395 - 1294407 + G 81 -5.5 -5.08178 | TGCAAAATGGATTGG GGCTG TAT CAGTC TTTTTATATATCTGT Cphy_1023 1294163 - 1294945 + | hypothetical protein TERM 1480 1295464 - 1295449 - g 73 -5.4 -4.54205 | AGGATACGAAAGAAA GACTGC CAAT GCAATC GGGAAGAATACGAGT TERM 1481 1295544 - 1295534 - g 70 -2.6 -5.15381 | opp_overlap 1295534 AATAGAGTTAAAAAA TAAA GAG TTTA AGTTGTTTCTTTATC Cphy_1024 1295073 - 1295747 + | two component transcriptional regulator Cphy_1025 1295798 - 1297027 + | histidine kinase TERM 1482 1297140 - 1297167 + F 79 -8.7 -3.79882 | opp_overlap 1297137 1297140 GCACCGTCAAACGGA TTATTGAAACA TACTTT TGTTTCAATAA TTTAGTCAATATTAT TERM 1483 1297242 - 1297217 - g 72 -9.2 -2.60688 | overlap 1297216 CAACTATTTTAGAAG CGAAAATGTT ATGTAA AACATTTTCG ACTGGAAGTATACAA Cphy_1026 1297198 - 1297953 + | ABC transporter related Cphy_1027 1297956 - 1300316 + | hypothetical protein TERM 1484 1300352 - 1300390 + T 91 -8.2 -5.0916 | opp_overlap 1300352 AATAATGTACAAAAA GGTACCTAAATTTGGTTT GTA AAGCCATCTTAAGGTACC TTTTTATATTACAAA TERM 1485 1300390 - 1300352 - T 80 -6 -4.94222 | opp_overlap 1300352 AATAATGTACAAAAA GGTACCTAAATTTGGTTT GTA AAGCCATCTTAAGGTACC TTTTTATATTACAAA Cphy_1028 1301665 - 1300463 - | sodium/glutamate symporter TERM 1486 1301825 - 1301775 - R 100 -10.9 -4.30448 | gap 1, opp_overlap 1301780, overlap 1301780 AAATCCAAGTGAAAA TAAAATCCAAGTGAAGCTTG AGAGAGAGTTAA CAAGCT-CACTTGGATTTTA TAGGATGTATTAAGA TERM 1487 1301820 - 1301780 - R 84 -6.4 -5.13343 | gap 1, opp_overlap 1301780, overlap 1301775 CAAGTGAAAATAAAA TCCAAGTGAAGCTTG AGAGAGAGTTAA CAAGCT-CACTTGGA TTTTATAGGATGTAT TERM 1488 1301780 - 1301820 + r 78 -7 -4.4195 | gap 1, opp_overlap 1301780 1301775 CAAGTGAAAATAAAA TCCAAGTGAAGCTTGAGAG AGAG TTAACAAGCT-CACTTGGA TTTTATAGGATGTAT Cphy_1029 1303036 - 1301846 - | iron-containing alcohol dehydrogenase Cphy_1030 1303422 - 1303622 + | hypothetical protein TERM 1489 1303687 - 1303677 - g 81 -5.4 -5.1615 | opp_overlap 1303681 TGAATACTTAAAAAA TCCT GGC AGGA TGGCATCCTTGCCTT TERM 1490 1303681 - 1303700 + G 81 -7.2 -4.56597 | gap 1, opp_overlap 1303677 TACTTAAAAAATCCT GGC-AGGAT GGC ATCCTTGCC TTTTTGGAAAGAGCA TERM 1491 1304179 - 1304160 - g 71 -7.2 -3.86037 | overlap 1304158 ACAAAGACTAAAATA CTCCTATT GCGA AACAGGAG AAATAATTTACTGTT Cphy_1031 1303651 - 1304244 + | hypothetical protein TERM 1492 1305005 - 1304991 - g 71 -4.2 -4.73388 | opp_overlap 1304991 AAGGCTTATTAAAAA CGGATA AGG TGTCCG TTGTAAATGTAACCG Cphy_1032 1304261 - 1305217 + | ribokinase-like domain-containing protein TERM 1493 1305582 - 1305546 - f 77 -7.9 -4.07885 | opp_overlap 1305553, overlap 1305549 TATCTCTCGGCAAAA CATTTTAGGCTGCAGAG ATT CTCTGCAGCCTTTTTTG CGTATTTCAATCTGT TERM 1494 1305553 - 1305575 + F 100 -17.8 -5.18561 | opp_overlap 1305549 1305546 CGGCAAAACATTTTA GGCTGCAGAG ATT CTCTGCAGCC TTTTTTGCGTATTTC Cphy_1033 1305814 - 1306302 + | GCN5-related N-acetyltransferase TERM 1495 1306651 - 1306615 - f 80 -8.9 -3.74056 | opp_overlap 1306618, overlap 1306618 GAATAAGTATCGAAA GAAGTTTAATGCGCCAT TAT ATGATGTATTAAACTTC TAAGTACGTTAACGA TERM 1496 1306884 - 1306896 + G 76 -6.3 -4.57073 | opp_overlap 1306884 ATGTGGTTTATGAAA CATTC AGA GAATG TTTTTACACGGGATA Cphy_1034 1306797 - 1307354 + | NUDIX hydrolase Cphy_1035 1307566 - 1309035 + | methyl-accepting chemotaxis sensory transducer TERM 1497 1309080 - 1309104 + F 100 -7.9 -5.50723 | ATTGTTAGGGGAATG GGGCTATGT GAAAGAA GCATAGCCC TTTTTCTTTTGGTAC Cphy_1036 1309148 - 1309444 + | hypothetical protein TERM 1498 1309846 - 1309868 + F 100 -14.2 -5.18371 | ATAAGGTATCGGTAA GGCTGTAGAC ATT GTCTGCAGCC TTTTGTTTTGTCAGA TERM 1499 1309903 - 1309935 + F 100 -10.6 -6.02919 | gap 1, opp_overlap 1309903 1309923 TCTTTCAAGAAAAAA GCAGAAGGCGAGCGC ATAA GCGCA-GTCTTCTGC TTTTTTTGTTTATAG TERM 1500 1309935 - 1309903 - f 100 -8.4 -5.4505 | gap 1, opp_overlap 1309903, overlap 1309923 TCTTTCAAGAAAAAA GCAGAAGGCGAGCGC ATAA GCGCA-GTCTTCTGC TTTTTTTGTTTATAG TERM 1501 1310027 - 1310045 + F 74 -7.5 -3.92522 | TAATTACAGGTTTGT GTTTGTG TTGTT CACAAAC TTTATAAGATTAAAC Cphy_1037 1310081 - 1311613 + | ABC transporter related TERM 1502 1311684 - 1311626 - T 93 -9.9 -4.2573 | gap 2, opp_overlap 1311630, overlap 1311628 1311630 1311632 TAAAGAATTTTAAAA GATATAGTTGCGCCCCATATCAAGTAGAT ATT ATCAATTTGATATGGGGCGCAACCATG-- TCTCGTTGTATTAAA TERM 1503 1311684 - 1311628 - T 100 -21.9 -3.71291 | opp_overlap 1311630, overlap 1311626 1311630 1311632 AAGAATTTTAAAAGA TATAGTTGCGCCCCATATCAAGTAGAT ATT ATCAATTTGATATGGGGCGCAACCATG TCTCGTTGTATTAAA TERM 1504 1311630 - 1311682 + T 100 -24.5 -3.06003 | opp_overlap 1311630 1311626 1311628 1311632 GAATTTTAAAAGATA TAGTTGCGCCCCATATCAAGTAGAT ATT ATCAATTTGATATGGGGCGCAACCA TGTCTCGTTGTATTA TERM 1505 1311682 - 1311630 - T 100 -24.5 -3.42437 | opp_overlap 1311630, overlap 1311626 1311628 1311632 GAATTTTAAAAGATA TAGTTGCGCCCCATATCAAGTAGAT ATT ATCAATTTGATATGGGGCGCAACCA TGTCTCGTTGTATTA TERM 1506 1311680 - 1311632 - T 100 -24.9 -3.27181 | opp_overlap 1311630, overlap 1311630 1311626 1311628 ATTTTAAAAGATATA GTTGCGCCCCATATCAAGTAGAT ATT ATCAATTTGATATGGGGCGCAAC CATGTCTCGTTGTAT Cphy_1038 1312103 - 1311750 - | hypothetical protein Cphy_1039 1313139 - 1312192 - | hypothetical protein TERM 1507 1312271 - 1312245 - G 73 -9.6 -2.89714 | opp_overlap 1312244 1312250, overlap 1312250 ACTCAAGGATAATGA TAAAACATTCTG GAT CAGCATGTTTTA CTGCTTGTTCTAGTT TERM 1508 1312266 - 1312250 - G 71 -5.1 -4.59069 | opp_overlap 1312250 1312244, overlap 1312245 AGGATAATGATAAAA CATTCTG GAT CAGCATG TTTTACTGCTTGTTC TERM 1509 1313244 - 1313204 - H 100 -7.7 -5.37043 | opp_overlap 1313204 1313206, overlap 1313206 ACTTTACACAAAAAA TAGCGATAACGAATTAAAA AAA TTATAATTCGCTAACGCTC TTCTTCTGATACGAT TERM 1510 1313242 - 1313206 - H 95 -10.3 -4.31943 | opp_overlap 1313206 1313204, overlap 1313204 TTTACACAAAAAATA GCGATAACGAATTAAAA AAA TTATAATTCGCTAACGC TCTTCTTCTGATACG TERM 1511 1313206 - 1313242 + H 73 -8.1 -3.50808 | opp_overlap 1313204 1313206, overlap 1313204 TTTACACAAAAAATA GCGATAACGAATTAAAA AAA TTATAATTCGCTAACGC TCTTCTTCTGATACG Cphy_1040 1313619 - 1314086 + | protein tyrosine phosphatase Cphy_1041 1314142 - 1314855 + | pseudouridine synthase Cphy_1042 1315052 - 1315261 + | hypothetical protein TERM 1512 1315522 - 1315512 - g 72 -4 -5.0432 | AAGAAAAATATAAAA GTAA ATC TTAC TACAAATGGGACATT Cphy_1043 1315254 - 1316147 + | radical SAM domain-containing protein Cphy_1044 1316291 - 1316473 + | hypothetical protein TERM 1513 1316485 - 1316534 + F 100 -22.7 -4.84527 | opp_overlap 1316488 1316492 GTAGTAATTTGCAAG GGATTAACGGTAATGATTTTGTA GTTT TATGAAATCATTACCGTTAATCC TTTTTAATATATGAC TERM 1514 1316531 - 1316488 - f 95 -12.8 -2.53911 | opp_overlap 1316485, overlap 1316492 GTAATTTGCAAGGGA TTAACGGTAATGATTTTGTA GTTT TATGAAATCATTACCGTTAA TCCTTTTTAATATAT TERM 1515 1316527 - 1316492 - f 77 -9.2 -3.21912 | opp_overlap 1316485, overlap 1316488 TTTGCAAGGGATTAA CGGTAATGATTTTGTA GTTT TATGAAATCATTACCG TTAATCCTTTTTAAT TERM 1516 1316637 - 1316647 + F 74 -5.4 -4.89477 | CTCATGAAAGCCCCA CGAA GCG TTCG TTTTCTTGTTAAAAA TERM 1517 1316879 - 1316861 - f 70 -8.2 -2.99268 | overlap 1316860 ATACATCTAAAGAAG GTAAGGAA ATG CTCCTTAC ATGCGCATCTTATAA Cphy_1045 1316927 - 1317427 + | ECF subfamily RNA polymerase sigma-24 factor Cphy_1046 1317414 - 1318310 + | hypothetical protein Cphy_1047 1318430 - 1318669 + | SPP1 family holin TERM 1518 1318678 - 1318722 + F 100 -8.2 -5.7946 | gap 1, overlap 1318718 1318719 AAATTAATAAATGAA TGGATGGAATATT-GTAGTTC GGTT GGATTACTAGTATTCTATCCA TTTTTTTCTTGCGGG TERM 1519 1318719 - 1318748 + F 74 -9.5 -2.57468 | overlap 1318678 1318718 ATTACTAGTATTCTA TCCATTTTTTTCT TGCG GGAAAAGAATGGA ATTACTATAATGAGA Cphy_1048 1319045 - 1320175 + | oxidoreductase domain-containing protein Cphy_1049 1320187 - 1321158 + | aldo/keto reductase Cphy_1050 1321179 - 1322210 + | aldo/keto reductase TERM 1520 1322387 - 1322340 - T 100 -14.6 -3.79113 | opp_overlap 1322346, overlap 1322341 1322346 ATCCTTTTATAAGAA TTAAAAGATCCAATAAGAAG CTTGCTGT CTTCTTATTGGATCTTTTAC GCTGTACCAATAGTG TERM 1521 1322386 - 1322341 - T 100 -18.1 -2.87146 | opp_overlap 1322346, overlap 1322340 1322346 TCCTTTTATAAGAAT TAAAAGATCCAATAAGAAG CTTGCTGT CTTCTTATTGGATCTTTTA CGCTGTACCAATAGT TERM 1522 1322346 - 1322381 + T 100 -13.6 -4.16943 | opp_overlap 1322341 1322340 1322346 TTATAAGAATTAAAA GATCCAATAAGAAG CTTGCTGT CTTCTTATTGGATC TTTTACGCTGTACCA TERM 1523 1322381 - 1322346 - T 100 -13.6 -4.59414 | opp_overlap 1322346, overlap 1322341 1322340 TTATAAGAATTAAAA GATCCAATAAGAAG CTTGCTGT CTTCTTATTGGATC TTTTACGCTGTACCA Cphy_1051 1323727 - 1322411 - | diguanylate cyclase/phosphodiesterase TERM 1524 1322719 - 1322706 - G 72 -3.9 -4.99035 | TCATCCATAGAAAAA GAAAA TCCT TTTTC CTGTAGTTTACCCAT TERM 1525 1322890 - 1322916 + g 84 -10.2 -3.80855 | opp_overlap 1322898, overlap 1322885 1322896 AAACATTGAGTGAGA TTGGAAGAGGTG TAA CGCCTCTTTCGA TTAATTTTTGCAAGA TERM 1526 1322896 - 1322910 + g 74 -7.8 -3.85724 | opp_overlap 1322898, overlap 1322890 1322885 TGAGTGAGATTGGAA GAGGTG TAA CGCCTC TTTCGATTAATTTTT TERM 1527 1324498 - 1324516 + G 80 -6.7 -4.77567 | overlap 1324491 TTATTTTAGCAGCTA TCGCAGT AGGGA GCTGCGA TTTTATTATGACAGT Cphy_1052 1323957 - 1324958 + | hypothetical protein TERM 1528 1325780 - 1325766 - g 76 -10 -3.09518 | overlap 1325758 GTAAAATCTCTAATA TGGCTG ATA CAGCCA CAATGAACAATGAAA Cphy_1053 1325075 - 1326331 + | methyl-accepting chemotaxis sensory transducer TERM 1529 1326400 - 1326434 + F 90 -5.8 -5.63103 | opp_overlap 1326400 ATAAAGTGTTTACAA GGTACCTAGAAAGGTG GAA TATCCTTTTAGGTATC TTTTTTTAGTTAAAA TERM 1530 1326860 - 1326850 - g 70 -6.8 -4.07124 | GATGATTTATACAAA TCGC CGT GCGA ACGTAAAAACTACTG Cphy_1054 1326734 - 1327660 + | hypothetical protein TERM 1531 1327664 - 1327711 + F 85 -9.3 -4.07568 | gap 2, overlap 1327669 1327673 GAATTAATTTAACCT CA-TCAGG-GACTTCCCCCGCTT CTGT AAGCGGGGGAAGTGACTTGCCTG TTTTAAAAAGCCACG TERM 1532 1327669 - 1327704 + F 100 -16.2 -3.28785 | overlap 1327664 1327673 AATTTAACCTCATCA GGGACTTCCCCCGCTT CTGT AAGCGGGGGAAGTGAC TTGCCTGTTTTAAAA TERM 1533 1327673 - 1327700 + F 100 -20 -2.58183 | overlap 1327669 1327664 TAACCTCATCAGGGA CTTCCCCCGCTT CTGT AAGCGGGGGAAG TGACTTGCCTGTTTT TERM 1534 1327733 - 1327721 - f 90 -9.1 -4.56597 | TGCCTGTTTTAAAAA GCCAC GTA GTGGC AATGAGGTAGAGCCG TERM 1535 1327967 - 1327981 + G 75 -7.2 -4.29176 | CCAACTATACGGTTG TAGTGA TAA TCACTA TTTTAGCTTCCGTCT Cphy_1055 1327816 - 1329480 + | ABC transporter related Cphy_1056 1329474 - 1331114 + | ABC transporter related TERM 1536 1331201 - 1331150 - f 79 -8.2 -4.08939 | overlap 1331153 1331158 TAATACTTATATAAA TTACTACATGCCATATCACCTCCA TAAG CAGATGTGATATGGCATATACAAA ATAAGGTAAAAAATT TERM 1537 1331198 - 1331153 - f 81 -9.9 -3.07132 | overlap 1331150 1331158 TACTTATATAAATTA CTACATGCCATATCACCTCCA TAAG CAGATGTGATATGGCATATAC AAAATAAGGTAAAAA TERM 1538 1331193 - 1331158 - f 88 -12 -2.912 | overlap 1331153 1331150 ATATAAATTACTACA TGCCATATCACCTCCA TAAG CAGATGTGATATGGCA TATACAAAATAAGGT Cphy_1057 1331318 - 1332256 + | ABC transporter related Cphy_1058 1332237 - 1333574 + | ABC-type Na+ efflux pump permease component-like protein Cphy_1059 1333598 - 1334971 + | ABC-type Na+ efflux pump permease component-like protein TERM 1539 1334990 - 1335039 + F 81 -3.2 -5.80003 | gap 3, opp_overlap 1334990 1335004 AAATATGATATAAAA GCTGTTGCATGATAG---CTCCTAT GGT ATAGGAGAAACCATTATGTAACAGC TTTTTTCTTTCTTAA TERM 1540 1335085 - 1335072 - f 84 -5.3 -5.44721 | overlap 1335075 ACCACTTTAAAAAAA TAACG TTAA CGTTA ACGAATATTTCTAGT TERM 1541 1335088 - 1335075 - f 74 -5.3 -4.80853 | overlap 1335072 ACTTTAAAAAAATAA CGTTA ACGT TAACG AATATTTCTAGTGAC Cphy_1060 1335283 - 1336341 + | LacI family transcription regulator Cphy_1061 1336470 - 1337546 + | mannonate dehydratase TERM 1542 1337757 - 1337745 - g 78 -6.3 -4.82667 | GCATTACAGCAAAAA CTTCT TGA AGAAG GAATTGAAAAGAAGG Cphy_1062 1337568 - 1339187 + | mannitol dehydrogenase domain-containing protein TERM 1543 1339273 - 1339322 + F 100 -16.1 -5.92399 | gap 1, opp_overlap 1339273 TTAGTGATATAAAAA GAAGTATCCTACAAGATAGAGTGT AAA AC-CTCTTTTTTGTGGGATACTTC TTTTTTCTTTTGTTA TERM 1544 1339322 - 1339273 - f 100 -11.7 -4.99035 | gap 1, opp_overlap 1339273 TTAGTGATATAAAAA GAAGTATCCTACAAGATAGAGTGT AAA AC-CTCTTTTTTGTGGGATACTTC TTTTTTCTTTTGTTA TERM 1545 1339514 - 1339500 - f 71 -2.2 -5.33848 | ATTAGAACTAAAAAA TAAAAA GCA TTTTCA AATATTAAAGAAAAA Cphy_1063 1339609 - 1343400 + | hypothetical protein TERM 1546 1343446 - 1343398 - T 100 -23.7 -3.79473 | opp_overlap 1343398 1343402 1343407, overlap 1343402 1343407 ATTACAATAGTGAAA TAAAGAAAAGACATGCAAAAGCA ATC TGTTTTTGCATGTCTTTTCTTTA TTTATAAGACAGATT TERM 1547 1343398 - 1343446 + T 100 -25.9 -3.86194 | opp_overlap 1343398 1343402 1343407, overlap 1343402 1343407 ATTACAATAGTGAAA TAAAGAAAAGACATGCAAAAGCA ATC TGTTTTTGCATGTCTTTTCTTTA TTTATAAGACAGATT TERM 1548 1343442 - 1343402 - T 100 -20.1 -4.49906 | opp_overlap 1343398 1343402 1343407, overlap 1343398 1343407 CAATAGTGAAATAAA GAAAAGACATGCAAAAGCA ATC TGTTTTTGCATGTCTTTTC TTTATTTATAAGACA TERM 1549 1343402 - 1343442 + T 100 -22.3 -4.55295 | opp_overlap 1343402 1343398 1343407, overlap 1343398 1343407 CAATAGTGAAATAAA GAAAAGACATGCAAAAGCA ATC TGTTTTTGCATGTCTTTTC TTTATTTATAAGACA TERM 1550 1343407 - 1343437 + T 100 -16.4 -5.22481 | opp_overlap 1343407 1343402 1343398, overlap 1343402 1343398 GTGAAATAAAGAAAA GACATGCAAAAGCA ATC TGTTTTTGCATGTC TTTTCTTTATTTATA TERM 1551 1343437 - 1343407 - T 100 -14.2 -5.18866 | opp_overlap 1343402 1343398 1343407, overlap 1343402 1343398 GTGAAATAAAGAAAA GACATGCAAAAGCA ATC TGTTTTTGCATGTC TTTTCTTTATTTATA Cphy_1064 1344645 - 1343506 - | metallophosphoesterase TERM 1552 1343689 - 1343704 + g 73 -9 -3.41125 | opp_overlap 1343683 1343688 TGCAATTAAGCCAAC TGGCCA TATT TGGCCA TTGTGAGTATGTCCG TERM 1553 1344610 - 1344590 - G 100 -9.1 -4.74653 | AAATGAATAAATAAA TATGCCACT GCA AGTAGCATA ATACTAATAATTAGT Cphy_1065 1344844 - 1345083 + | hypothetical protein TERM 1554 1345386 - 1345362 - f 93 -9.4 -4.5954 | opp_overlap 1345362 1345365 TCACATGATATAAAA CAAGCAAAGA ACAAA TCCTTGCTTG TATGTGGAGCGCTAT TERM 1555 1345424 - 1345435 + F 80 -5.8 -4.9445 | GAAATAAAACATGTG CGGA ATTT TCCG TTTTTACTTCCTTAT TERM 1556 1345460 - 1345495 + F 100 -9.2 -5.95539 | CCTTATGTAGAATTT TAGTCATGAAGCAG CGCTAAGA CTGTTTCATGGCTA TTTTTTTATTTAAGG TERM 1557 1346991 - 1347013 + G 71 -7 -3.99324 | TTTAGCAGGTGCTGT TTGTGGAGAT CAT GTCTCCCCAA TTTCTGATACTACAA Cphy_1066 1345519 - 1347243 + | Na+/H+ antiporter NhaC TERM 1558 1348528 - 1348544 + G 73 -2.3 -5.33405 | overlap 1348530 TTCAAGTACGTTCTT TTGAAAT GGT ATTTCTA TTTTTATTTACTGCG Cphy_1067 1348080 - 1349441 + | MATE efflux family protein TERM 1559 1349581 - 1349531 - f 90 -12.2 -3.19463 | gap 1, opp_overlap 1349538, overlap 1349538 GCTATGATCGACTAA CAATAAAGAGCTAGTTCAAATGG TGTTCT CCATTTGAGCTGGCTCTTT-TTG TCACACGGGGAACTG TERM 1560 1349575 - 1349538 - f 100 -11.4 -4.48713 | opp_overlap 1349538, overlap 1349531 TCGACTAACAATAAA GAGCTAGTTCAAATGG TGTTCT CCATTTGAGCTGGCTC TTTTTGTCACACGGG TERM 1561 1349538 - 1349575 + F 100 -15.8 -4.82901 | opp_overlap 1349538 1349531 TCGACTAACAATAAA GAGCTAGTTCAAATGG TGTTCT CCATTTGAGCTGGCTC TTTTTGTCACACGGG Cphy_1068 1349837 - 1352344 + | ABC-type phosphate transport system periplasmic component-like protein TERM 1562 1353046 - 1353029 - g 71 -7.1 -3.92075 | opp_overlap 1353029, overlap 1353015 1353012 ACCTTTAGTCATAAA GGAAAAT AAGT ATTTTCC TTTAGAAACATTAAA Cphy_1069 1352436 - 1353353 + | hypothetical protein Cphy_1070 1353365 - 1354357 + | hypothetical protein TERM 1563 1354399 - 1354426 + F 100 -13.6 -5.12707 | opp_overlap 1354398 1354397 1354390 TAGAAATTACAAAGT GCTCCAGAGTAA AAAA TTACTTTGGAGC TTTTTTAAACTTTAA Cphy_1071 1354865 - 1357051 + | glycoside hydrolase family protein TERM 1564 1357384 - 1357343 - f 100 -16 -2.96979 | opp_overlap 1357344, overlap 1357334 1357338 GTAACACGAAGCATA TGCTCTCGTCTCCGAAAA TATATT TTTTCGGAGACGAGGGCT TTTTTTATCCAAATT TERM 1565 1357344 - 1357383 + F 100 -21.7 -5.61596 | opp_overlap 1357334 1357343 1357338 TAACACGAAGCATAT GCTCTCGTCTCCGAAAA TATATT TTTTCGGAGACGAGGGC TTTTTTTATCCAAAT TERM 1566 1358289 - 1358338 + F 76 -9.5 -3.0579 | opp_overlap 1358292, overlap 1358288 1358292 TTTTATGAGTTTTAC TAAGAAGGTCTTTTGCATACTAT TATA GTATAAAGCGAAAGACCTTCTTA ATTTTAAAAAAATTT TERM 1567 1358499 - 1358556 + F 89 -8.5 -4.57073 | opp_overlap 1358503 1358508 AATATATGGTAATAT GTAATCAGATTGGTAACGATACCGGTA ACAT TACCGACATCGTTACCAATTAGGAGAC TTTTTCACAACAATA TERM 1568 1358552 - 1358503 - f 90 -12.3 -3.19026 | opp_overlap 1358499, overlap 1358508 TATGGTAATATGTAA TCAGATTGGTAACGATACCGGTA ACAT TACCGACATCGTTACCAATTAGG AGACTTTTTCACAAC TERM 1569 1358547 - 1358508 - f 100 -19.6 -2.93878 | opp_overlap 1358499, overlap 1358503 TAATATGTAATCAGA TTGGTAACGATACCGGTA ACAT TACCGACATCGTTACCAA TTAGGAGACTTTTTC Cphy_1074 1358682 - 1360004 + | extracellular solute-binding protein TERM 1570 1360017 - 1360042 + F 79 -8.3 -4.07568 | opp_overlap 1360017 1360035 TAAAAAGGGACGAAA GGGTGAGGC AATCATAA GTCTCACCC TTTTAAAGAAGGAGA TERM 1571 1360242 - 1360229 - g 73 -5.3 -4.63007 | opp_overlap 1360227 1360229 1360229, overlap 1360224 GAGAATTATAGAAAA GCATT TTCA AATGC TGATTTTGTGAATGC Cphy_1075 1360064 - 1360906 + | binding-protein-dependent transport systems inner membrane component Cphy_1076 1360906 - 1361769 + | binding-protein-dependent transport systems inner membrane component Cphy_1077 1361911 - 1362948 + | LacI family transcription regulator Cphy_1078 1362979 - 1363560 + | hypothetical protein TERM 1572 1363612 - 1363576 - f 86 -9.5 -4.10144 | opp_overlap 1363581, overlap 1363581 CGAATATAACAATAA GAAAAGGTATCTCCCGT ATA ATGGGTGATACCTTTTT TTGCACTGATCGTTA TERM 1573 1363581 - 1363607 + F 100 -11.6 -5.44721 | opp_overlap 1363576 1363581 ATAACAATAAGAAAA GGTATCTCCCGT ATA ATGGGTGATACC TTTTTTTGCACTGAT TERM 1574 1363607 - 1363581 - f 100 -9.4 -5.01823 | opp_overlap 1363581, overlap 1363576 ATAACAATAAGAAAA GGTATCTCCCGT ATA ATGGGTGATACC TTTTTTTGCACTGAT Cphy_1079 1363890 - 1364750 + | hypothetical protein Cphy_1080 1364747 - 1365703 + | peptidase U32 Cphy_1081 1367327 - 1365705 - | diguanylate cyclase TERM 1575 1365755 - 1365777 + g 81 -11.4 -2.73123 | opp_overlap 1365752, overlap 1365746 TCGCACGATAGAGGG CTTTATCTGC ATT GCGGATAAAG TCATTCAAGCATTTT TERM 1576 1366407 - 1366425 + g 71 -9 -3.28261 | opp_overlap 1366409 1366417 AAGTTTCCGTTGATA TACCATTA ATG TAATGGTA TTACTGTGACATTCT Cphy_1082 1368686 - 1367343 - | diguanylate cyclase TERM 1577 1367903 - 1367946 + g 86 -6.4 -5.23765 | gap 1, opp_overlap 1367915 CCTTTTGTTCATATT GATGAAAGATAA-TATCTTTA AGA TAAATATTCTTATCTTTCATC TTTTTATATTCTTTC Cphy_1083 1368929 - 1369690 + | ABC transporter related TERM 1578 1369799 - 1369832 + F 100 -12.7 -3.91897 | opp_overlap 1369804 1369826, overlap 1369804 GAGATTCTAGTTCAT GAAAAGATGAATTGG CTTG CCAATTCATCTTTTA TTTCTAAATAAAAGA TERM 1579 1369804 - 1369827 + F 100 -12.6 -5.0065 | opp_overlap 1369804 1369826, overlap 1369799 TCTAGTTCATGAAAA GATGAATTGG CTTG CCAATTCATC TTTTATTTCTAAATA TERM 1580 1369827 - 1369804 - f 100 -12.6 -4.26903 | opp_overlap 1369804 1369799, overlap 1369826 TCTAGTTCATGAAAA GATGAATTGG CTTG CCAATTCATC TTTTATTTCTAAATA Cphy_1084 1369861 - 1371309 + | peptidase M1 membrane alanine aminopeptidase Cphy_1085 1371406 - 1371780 + | hypothetical protein Cphy_1086 1372561 - 1373088 + | ECF subfamily RNA polymerase sigma-24 factor TERM 1581 1373241 - 1373231 - g 81 -5.4 -5.11937 | AAGAATTCTAAAAAA CAAG AAA CTTG GGAAAAGATAACCAA Cphy_1087 1373171 - 1374694 + | hypothetical protein TERM 1582 1374834 - 1374801 - T 85 -8.2 -4.6644 | opp_overlap 1374833, overlap 1374802 AATACATTTGAAAAA GGCGCAACTGGA AGTTGAAAAA TCCAGTTGCGCT TAAAAAAATTACAAA TERM 1583 1374833 - 1374802 - T 91 -11.7 -3.3878 | overlap 1374801 ATACATTTGAAAAAG GCGCAACTGGA AGTTGAAAAA TCCAGTTGCGC TTAAAAAAATTACAA TERM 1584 1374833 - 1374865 + T 72 -8.7 -3.10622 | opp_overlap 1374801, overlap 1374843 AAAAATCCAGTTGCG CTTAAAAAAATTACA AAA TGTGATTATTTTAAG TATTAAATAACTATT Cphy_1088 1376570 - 1375287 - | GntR family transcriptional regulator TERM 1585 1378004 - 1378019 + G 72 -7.6 -3.80862 | TGTTACCATGCGGCA GGACTT CATG AAGTCC TTTGATGCTGAGTTT Cphy_1089 1377396 - 1378889 + | extracellular solute-binding protein TERM 1586 1379032 - 1379013 - g 88 -3.5 -5.90231 | AGAAATAGAAAAAAA CACAGAG AATGGA CGCTGTG GCTGTTATTGCTGCC Cphy_1090 1378977 - 1379861 + | binding-protein-dependent transport systems inner membrane component TERM 1587 1380060 - 1380072 + G 83 -9.1 -4.3295 | opp_overlap 1380060 1380059 1380058, overlap 1380070 GGAATACATAAAATC CGGTG ATG CACCG TTTCATTTTGTTGAA TERM 1588 1380474 - 1380493 + G 73 -6.4 -4.23723 | opp_overlap 1380460 1380469, overlap 1380476 AGCGGCACAAGTGGA TGGTGCGG CACA TCGCACTA TTTTGCATCATATTG Cphy_1091 1379875 - 1380771 + | binding-protein-dependent transport systems inner membrane component Cphy_1092 1380786 - 1381442 + | hypothetical protein TERM 1589 1382118 - 1382143 + F 81 -9.1 -3.76781 | opp_overlap 1382124, overlap 1382109 1382124 TAAGTAGAGTTTTGA GAAAAAGCTCC TTTC GGAGCTTTTTG TTTGATGGAGTGTTT TERM 1590 1382137 - 1382124 - f 90 -8.1 -4.83615 | opp_overlap 1382109 1382118 1382124 GAGTTTTGAGAAAAA GCTCC TTTC GGAGC TTTTTGTTTGATGGA TERM 1591 1382124 - 1382137 + F 100 -8.1 -5.33405 | opp_overlap 1382124, overlap 1382109 1382118 GAGTTTTGAGAAAAA GCTCC TTTC GGAGC TTTTTGTTTGATGGA TERM 1592 1382450 - 1382477 + F 91 -5.6 -5.82281 | opp_overlap 1382452, overlap 1382452 TAAGAGCGTATATAG CAGACAGAGCCT ATCT AGGTTTTGTCTA TTTTTTTATATCTTT TERM 1593 1382452 - 1382475 + F 85 -8.2 -4.51477 | opp_overlap 1382452, overlap 1382450 AGAGCGTATATAGCA GACAGAGCCT ATCT AGGTTTTGTC TATTTTTTTATATCT TERM 1594 1382653 - 1382632 - f 79 -6.7 -4.63218 | gap 1 CTTTTCGTAACAAAA GTGTGAAAGT AGA ACT-TCACAC TCAAGTTTTTCTAAA Cphy_1093 1382755 - 1384071 + | GTP-binding proten HflX TERM 1595 1384132 - 1384180 + F 95 -4.8 -6.14618 | gap 1, opp_overlap 1384132 1384134 TGTAACATTACACTA TATAGGAAGACTTCGAT-GGATG ATCA TATCAGAAAGAAGTCTTCCTATA TTTTTTTATTTTGTA Cphy_1094 1384261 - 1384773 + | ECF subfamily RNA polymerase sigma-24 factor Cphy_1095 1384766 - 1385512 + | signal peptidase I Cphy_1096 1385537 - 1386148 + | ABC transporter related Cphy_1097 1386162 - 1386935 + | hypothetical protein TERM 1596 1387382 - 1387363 - g 78 -8.6 -3.74928 | opp_overlap 1387373 1387376 AGACTAAGGGAACAA CTGCAAAG ATTA CTTCGCAG CATGCGGATATTTAT Cphy_1098 1387170 - 1388618 + | FAD dependent oxidoreductase TERM 1597 1388800 - 1388776 - f 76 -7.1 -4.33621 | opp_overlap 1388776 1388779, overlap 1388779 TATGTAATCAACAAA CAGGCTTGTGA TAA TCACAGGCTTG TTGTCGTTGAAATAG TERM 1598 1388776 - 1388800 + F 90 -11.5 -3.51825 | opp_overlap 1388776 1388779, overlap 1388779 TATGTAATCAACAAA CAGGCTTGTGA TAA TCACAGGCTTG TTGTCGTTGAAATAG TERM 1599 1388779 - 1388797 + F 83 -9.6 -3.8917 | opp_overlap 1388776 1388779, overlap 1388776 GTAATCAACAAACAG GCTTGTGA TAA TCACAGGC TTGTTGTCGTTGAAA Cphy_1099 1388945 - 1389466 + | G:T/U mismatch-specific DNA glycosylase Cphy_1100 1389516 - 1390538 + | peptidase M42 family protein TERM 1600 1390659 - 1390601 - T 88 -11.3 -3.33187 | gap 1, opp_overlap 1390601 1390606, overlap 1390606 1390621 AAAAAGATAAAATGA GAAAAGAGGCTTTTGCAAAATAGCTGAT GTAA ATCAGCTATTGAGC-AAGGACTCTTTTC TTTGCAAATAATATC TERM 1601 1390601 - 1390659 + T 100 -13.5 -3.5882 | gap 1, opp_overlap 1390601 1390606 1390621, overlap 1390606 AAAAAGATAAAATGA GAAAAGAGGCTTTTGCAAAATAGCTGAT GTAA ATCAGCTATTGAGC-AAGGACTCTTTTC TTTGCAAATAATATC TERM 1602 1390654 - 1390606 - T 71 -5.4 -4.70046 | gap 1, opp_overlap 1390601 1390606, overlap 1390601 1390621 GATAAAATGAGAAAA GAGGCTTTTGCAAAATAGCTGAT GTAA ATCAGCTATTGAGC-AAGGACTC TTTTCTTTGCAAATA TERM 1603 1390606 - 1390654 + T 87 -7.6 -4.87803 | gap 1, opp_overlap 1390606 1390601 1390621, overlap 1390601 GATAAAATGAGAAAA GAGGCTTTTGCAAAATAGCTGAT GTAA ATCAGCTATTGAGC-AAGGACTC TTTTCTTTGCAAATA TERM 1604 1390640 - 1390621 - T 86 -9.4 -4.07885 | opp_overlap 1390606 1390601, overlap 1390606 1390601 GAGGCTTTTGCAAAA TAGCTGAT GTAA ATCAGCTA TTGAGCAAGGACTCT Cphy_1101 1391097 - 1390675 - | hypothetical protein Cphy_1102 1392175 - 1391306 - | LysR family transcriptional regulator Cphy_1103 1392551 - 1393522 + | oxidoreductase domain-containing protein TERM 1605 1393885 - 1393935 + T 100 -14.4 -4.72986 | gap 1, opp_overlap 1393885 1393886, overlap 1393886 ATATGCAATCATAAA G-GGAGCTTATGCTCAATAGT AGATATAAAA GCTATTGAGCATAAGCTCCTC TTTTTCATAAAAATA TERM 1606 1393934 - 1393885 - T 100 -13.9 -4.07306 | opp_overlap 1393885 1393886, overlap 1393886 ATATGCAATCATAAA GGGAGCTTATGCTCAATAG TAGATATAAAAG CTATTGAGCATAAGCTCCT CTTTTTCATAAAAAT TERM 1607 1393886 - 1393933 + T 100 -18.1 -3.98256 | opp_overlap 1393886 1393885, overlap 1393885 TATGCAATCATAAAG GGAGCTTATGCTCAATAGT AGATATAAAA GCTATTGAGCATAAGCTCC TCTTTTTCATAAAAA TERM 1608 1393933 - 1393886 - T 100 -17.4 -3.03661 | opp_overlap 1393885 1393886, overlap 1393885 TATGCAATCATAAAG GGAGCTTATGCTCAATAG TAGATATAAAAG CTATTGAGCATAAGCTCC TCTTTTTCATAAAAA Cphy_1104 1395782 - 1394178 - | parallel beta-helix repeat-containing protein TERM 1609 1395511 - 1395525 + g 81 -4.2 -5.252 | overlap 1395513 AATAATTGCTGAATT TCCGAC GCG GTCGCA TTTTTTGTAACGCTA TERM 1610 1396328 - 1396357 + H 82 -5 -5.42514 | GGAGTTTTTTTGTTA TGCCTCTTATGC TATTTT GTGTATGAGGCA TTTTTTAGTTTATAG TERM 1611 1396368 - 1396396 + H 89 -11.9 -3.0127 | opp_overlap 1396377, overlap 1396370 1396372 1396377 AGGCATTTTTTAGTT TATAGGAATTTGC GCT GCAATTTCCTATA TGTATGGTTAAGTCA TERM 1612 1396370 - 1396394 + H 81 -10.1 -3.05914 | opp_overlap 1396377, overlap 1396368 1396372 1396377 GCATTTTTTAGTTTA TAGGAATTTGC GCT GCAATTTCCTA TATGTATGGTTAAGT TERM 1613 1396372 - 1396392 + H 70 -8.3 -3.08278 | opp_overlap 1396377, overlap 1396370 1396368 1396377 ATTTTTTAGTTTATA GGAATTTGC GCT GCAATTTCC TATATGTATGGTTAA Cphy_1105 1396495 - 1397562 + | nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase Cphy_1106 1397559 - 1398119 + | hypothetical protein Cphy_1107 1398085 - 1398870 + | cobalamin-5-phosphate synthase CobS Cphy_1108 1398848 - 1399264 + | cobalamin biosynthesis protein CobU, putative, truncation Cphy_1109 1399242 - 1399874 + | phosphoglycerate mutase Cphy_1110 1399902 - 1400921 + | cobalamin biosynthesis protein CobD Cphy_1111 1401078 - 1402166 + | aminotransferase class I and II TERM 1614 1403323 - 1403311 - g 78 -4.1 -5.27476 | GGTAAGAAAACAAAA CAGTG GAA CACTA AATAAGGTTGCAGGT Cphy_1112 1402184 - 1403725 + | cobyric acid synthase CobQ Cphy_1113 1403722 - 1404246 + | ATP:corrinoid adenosyltransferase BtuR/CobO/CobP Cphy_1114 1404266 - 1404820 + | NADPH-dependent FMN reductase TERM 1615 1405333 - 1405371 + F 81 -3.1 -5.82281 | overlap 1405334 GGTGGCAACGCGGAA TCCTTTCGTCCCATGTA ATTAA TGCATGAGGTGAAGGGC TTTTTTTATATCTTT TERM 1616 1405334 - 1405370 + F 71 -6.6 -4.05708 | overlap 1405333 GTGGCAACGCGGAAT CCTTTCGTCCCATGTA ATTAA TGCATGAGGTGAAGGG CTTTTTTTATATCTT Cphy_1115 1405544 - 1406821 + | seryl-tRNA synthetase TERM 1617 1406887 - 1406848 - f 100 -13.8 -5.07523 | opp_overlap 1406848 TATATAGAAATAAAA TATGCCAAGGAAAATTAG TTTT CTAGTTTACCTTGGCATA TTTGTCTTATAAACT TERM 1618 1406848 - 1406887 + F 100 -16 -4.27519 | opp_overlap 1406848 TATATAGAAATAAAA TATGCCAAGGAAAATTAG TTTT CTAGTTTACCTTGGCATA TTTGTCTTATAAACT TERM 1619 1407142 - 1407126 - g 88 -5.1 -5.4433 | AGACACAAAGAAAAA TCAAGAC CAT GTCATGA AGATGCTTCTAATGG Cphy_1116 1407094 - 1408464 + | MATE efflux family protein TERM 1620 1408979 - 1408995 + G 77 -10.9 -2.52759 | overlap 1408978 TATTCTTAGTCGTGA CGAATCC GGT GGATTCG ATTGCTCAATATGTT Cphy_1117 1408609 - 1409586 + | L-lactate dehydrogenase TERM 1621 1409655 - 1409686 + F 73 -4.5 -4.94992 | opp_overlap 1409657 ATTAAGAAATTACTA TAGCAAGCCAG GTTAAAATTA CTAGCTTGCTA TTTTTGTGCATTTAG Cphy_1118 1410194 - 1411819 + | extracellular solute-binding protein TERM 1622 1411836 - 1411862 + F 100 -12.4 -4.38154 | opp_overlap 1411833 1411832 1411830 CTTTCATAATACTGA GGCTACCCTT TGAACAT AAGGGTAGCC TTTTATAAAAAGTAT Cphy_1119 1411890 - 1412846 + | binding-protein-dependent transport systems inner membrane component Cphy_1120 1412857 - 1413726 + | binding-protein-dependent transport systems inner membrane component TERM 1623 1414381 - 1414358 - g 81 -4.6 -5.34555 | overlap 1414359 GCACAGCACAAAAAA TGGTACTAAA TATG CTTAGTACCT CAGTAATGATTAAGC TERM 1624 1414380 - 1414359 - g 74 -8.1 -3.79649 | overlap 1414358 CACAGCACAAAAAAT GGTACTAAA TATG CTTAGTACC TCAGTAATGATTAAG Cphy_1121 1413748 - 1414641 + | glucokinase regulatory-like protein Cphy_1122 1415564 - 1414707 - | RpiR family transcriptional regulator TERM 1625 1415490 - 1415501 + g 71 -4.4 -4.88405 | opp_overlap 1415490, overlap 1415485 GATATTGTTTAAAAA GTAG GTAG CTAC TTTTCTTTCGGAATT Cphy_1123 1416768 - 1415584 - | anhydro-N-acetylmuramic acid kinase Cphy_1124 1416904 - 1418049 + | hypothetical protein Cphy_1125 1418251 - 1419804 + | glycoside hydrolase family 3 protein Cphy_1126 1419857 - 1420798 + | ATPase BadF/BadG/BcrA/BcrD type Cphy_1127 1420791 - 1421288 + | hypothetical protein TERM 1626 1421339 - 1421380 + F 100 -14.1 -3.30701 | opp_overlap 1421335, overlap 1421335 GTTATAGTAAGGTTA TCAGGCTAAAAAAGATG CAGGAGCA TATCTTTTTTAGCCTGA TTGAATTTAGTACAA TERM 1627 1421692 - 1421745 + F 79 -2.5 -5.8187 | gap 1, opp_overlap 1421710 1421713, overlap 1421731 AGTTGTAGTTTAAAA CCGCTATTAAAAACGTAACAGGAATA TTT TATTC-TGAAACGTTAGGGATAGCGG TTTTTTTATTACATA Cphy_1128 1421795 - 1422781 + | ABC transporter related Cphy_1129 1422828 - 1423619 + | ABC-type uncharacterized transport system permease component-like protein Cphy_1130 1423603 - 1424397 + | hypothetical protein Cphy_1131 1424436 - 1424684 + | hypothetical protein TERM 1628 1424847 - 1424894 + T 100 -11.5 -4.50859 | gap 1, opp_overlap 1424851, overlap 1424843 1424851 1424854 TATAAAATAAGTTAC AAAAGAAGAGCACTTCA-GGAG TTATC CTCCATGGAGTGCTCTTCTTAA TTTATATTTTAATTA TERM 1629 1424890 - 1424851 - T 100 -14.5 -4.51847 | gap 1, opp_overlap 1424847 1424843 1424851 1424854 AAATAAGTTACAAAA GAAGAGCACTTCA-GGAG TTATC CTCCATGGAGTGCTCTTC TTAATTTATATTTTA TERM 1630 1424851 - 1424890 + T 100 -16.7 -3.75031 | gap 1, opp_overlap 1424851, overlap 1424847 1424843 1424854 AAATAAGTTACAAAA GAAGAGCACTTCA-GGAG TTATC CTCCATGGAGTGCTCTTC TTAATTTATATTTTA TERM 1631 1424854 - 1424887 + T 100 -12.6 -3.95911 | gap 1, opp_overlap 1424851, overlap 1424851 1424847 1424843 TAAGTTACAAAAGAA GAGCACTTCA-GGAG TTATC CTCCATGGAGTGCTC TTCTTAATTTATATT Cphy_1132 1425929 - 1424925 - | putative solute-binding component of ABC transporter TERM 1632 1426024 - 1426042 + r 82 -6.1 -5.00267 | AGATATCTTTTGCCC GTAACTT CTTTT AAGTTAC TTTCTTTTTATAGTT Cphy_1133 1427142 - 1426063 - | monosaccharide-transporting ATPase Cphy_1134 1428675 - 1427155 - | ABC transporter related TERM 1633 1427215 - 1427233 + g 76 -6 -4.62336 | opp_overlap 1427217 TGCGGCAAGATAGAG GATCTCTT CCT GAGAGGTC TTTTTAGCATCCAAT TERM 1634 1428225 - 1428206 - G 78 -9.4 -3.51032 | opp_overlap 1428210, overlap 1428210 ATTCTTGAATTATAA GAAATAGC TTTT GCTATTTC CACCATTTGTTGCTG TERM 1635 1428985 - 1429017 + r 76 -6.3 -4.6526 | ATCAGATTATTATGA CAAGTAAAAGTACGT GAA GCGTGCATTTCCTTG TTTTTGAAGATTTAT Cphy_1135 1429883 - 1429296 - | hypothetical protein TERM 1636 1429602 - 1429626 + g 70 -2.9 -5.24129 | TCGAATTGCTTCTTT TTTAGGGCCAT TGT ATGATTCTAAA TTTTTTATAGCACAC TERM 1637 1429944 - 1429928 - H 86 -3.8 -5.77571 | ACCAAAAAATAAAAA TAAGTA GCAAA TACTTA ATGATATCGCCATTG TERM 1638 1430164 - 1430182 + H 95 -5.3 -5.95946 | opp_overlap 1430164, overlap 1430156 GGTTACAGAAAAGAA TCCAGGT GAAAG ATCTGGA TTTTTTTATTATTAA TERM 1639 1431743 - 1431733 - g 70 -5.4 -4.45577 | overlap 1431734 AGAAATTGCAGAAAA TCTC TGT GAGA CAGTGAAAAAATTCC TERM 1640 1431989 - 1432001 + G 71 -4.9 -4.61873 | ACAAAGGCATTTGAG GAAAA TCG TTTTC TTTTGGTTTATCAAG Cphy_1136 1430300 - 1432699 + | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) TERM 1641 1432707 - 1432730 + F 100 -7.4 -5.82036 | overlap 1432710 TGGTATAATTAATTA GTGGGCAAGC TTAA GCTTGTCTGC TTTTTTATTTCTTAT TERM 1642 1432710 - 1432727 + F 73 -7.7 -3.57147 | overlap 1432707 TATAATTAATTAGTG GGCAAGC TTAA GCTTGTC TGCTTTTTTATTTCT TERM 1643 1432920 - 1432934 + F 76 -8.6 -3.47345 | opp_overlap 1432920 1432919 TGCCTGATTAGTAAC GTGTGA AAT TCACAC TTCTCATATGGAATT Cphy_1137 1433004 - 1433864 + | NUDIX hydrolase TERM 1644 1434020 - 1434062 + T 100 -16.6 -3.14931 | opp_overlap 1434025 1434027 1434029 CATTATATTACTTTA CTATATATAGCTCAGGGGTA TTA TTTCTCTGAGCTATATATAG TTCATGACAAGTAAA Cphy_1138 1435286 - 1434207 - | ribosome small subunit-dependent GTPase A TERM 1645 1434360 - 1434374 + g 86 -10 -4.15044 | opp_overlap 1434359 1434358 GTCTAGACTTAAAGT GCCATC TTC GATGGC TTTATTCACCGCACA TERM 1646 1435334 - 1435321 - H 91 -4.5 -5.96219 | opp_overlap 1435321 TAGGCACAAAAAAAA CACGC CTTC ACGTG TTTGTGCGATTTCCA TERM 1647 1435780 - 1435798 + H 72 -7.4 -3.80014 | overlap 1435795 AGCTTTGAAATGTTT TGATAGCC GAC GGCTTTCA TTTCATCATAGGTGT TERM 1648 1436033 - 1436001 - H 100 -16.5 -3.58536 | opp_overlap 1436001 AAATTGATTTGGAAA GGACCACATTGGTAA TTA TTACGAATGTGGTCC TTTTTTCTCGTTATA TERM 1649 1436001 - 1436033 + H 100 -16.5 -5.39755 | opp_overlap 1436001 AAATTGATTTGGAAA GGACCACATTGGTAA TTA TTACGAATGTGGTCC TTTTTTCTCGTTATA TERM 1650 1436238 - 1436225 - g 74 -2.5 -5.30155 | TGAGGAATTAAAAAA TTTTA TGGG TAAAA AGGTTACATTACACG Cphy_1139 1436166 - 1437491 + | tRNA synthetase class II (D K and N) Cphy_1140 1437798 - 1438955 + | GDSL family lipase Cphy_1141 1439136 - 1440095 + | hypothetical protein Cphy_1142 1440284 - 1440844 + | hypothetical protein TERM 1651 1440892 - 1440881 - f 70 -7.2 -3.64438 | overlap 1440880 TAGGTTAACAAAAAG GCGC ATTC GCGC TAGAATTGAGGTTAC TERM 1652 1441295 - 1441283 - g 76 -6.3 -4.68539 | opp_overlap 1441283, overlap 1441291 ATTAAAACTACAAAA TAACG GAA CGTTA TCCCTTGATAATGCA Cphy_1143 1440909 - 1441574 + | hypothetical protein Cphy_1144 1441559 - 1442980 + | band 7 protein Cphy_1145 1443071 - 1444669 + | carbohydrate kinase FGGY TERM 1653 1444691 - 1444722 + F 78 -5.9 -4.87291 | opp_overlap 1444693 1444694, overlap 1444694 AACATATTCTGCAAA AACGGACGTAACT ATTAGA AGTTACGTCCTTA TTTTTCCTTCGGCTC TERM 1654 1444720 - 1444693 - f 89 -8.5 -4.59109 | opp_overlap 1444691 1444694, overlap 1444694 CATATTCTGCAAAAA CGGACGTAACT ATTAGA AGTTACGTCCT TATTTTTCCTTCGGC TERM 1655 1444694 - 1444719 + F 100 -12 -4.53777 | opp_overlap 1444693 1444694, overlap 1444691 ATATTCTGCAAAAAC GGACGTAACT ATTAGA AGTTACGTCC TTATTTTTCCTTCGG TERM 1656 1444719 - 1444694 - f 89 -12 -3.34984 | opp_overlap 1444694 1444691, overlap 1444693 ATATTCTGCAAAAAC GGACGTAACT ATTAGA AGTTACGTCC TTATTTTTCCTTCGG TERM 1657 1445036 - 1445054 + G 78 -3.8 -5.27476 | opp_overlap 1445040, overlap 1445040 CAACTTATATGGGAA TTGACACC TGG GGTGTAGA TTTTGTTTTATTAGA Cphy_1146 1444810 - 1446213 + | rhamnulokinase TERM 1658 1447530 - 1447518 - g 73 -6.3 -4.51765 | opp_overlap 1447517, overlap 1447509 GATAAGCTAAAGAAA CTTCA GAA TGAAG GTAAATTTACAGAAC Cphy_1147 1446441 - 1447691 + | L-rhamnose isomerase TERM 1659 1447752 - 1447727 - f 81 -9.1 -3.93658 | opp_overlap 1447734 AATACTTTGAAACAA TACCAGATCTG TGGA CAGATTTGGTA AAATGGGGCTGGTGC TERM 1660 1447759 - 1447780 + F 91 -12.3 -3.39449 | opp_overlap 1447756 GATTTGGTAAAATGG GGCTGGTGC ATGT GTACCAGCC TTACTATTCATAACA Cphy_1148 1447986 - 1448957 + | AraC family transcriptional regulator Cphy_1149 1448957 - 1449271 + | L-rhamnose 1-epimerase TERM 1661 1449280 - 1449308 + F 83 -9.6 -3.78141 | opp_overlap 1449279 1449280 1449288, overlap 1449283 GGATTAAAAATAGAG GGAGCAGAGGGA GAAGA TCCCTGTGCTTC TTTAGAGTTTATTTG TERM 1662 1449283 - 1449305 + F 77 -7.7 -3.99407 | opp_overlap 1449280 1449279 1449288, overlap 1449280 TTAAAAATAGAGGGA GCAGAGGGA GAAGA TCCCTGTGC TTCTTTAGAGTTTAT TERM 1663 1449538 - 1449516 - f 89 -12.1 -3.35798 | opp_overlap 1449516 ATTTTTGAGTTATAA CTCCCTTTG GATAT CAAAGGGAG TTTTTTTAGTTTATA TERM 1664 1449516 - 1449538 + F 100 -12.8 -5.75822 | opp_overlap 1449516 ATTTTTGAGTTATAA CTCCCTTTGG ATA TCAAAGGGAG TTTTTTTAGTTTATA TERM 1665 1449544 - 1449584 + F 76 -7.1 -4.19577 | TCAAAGGGAGTTTTT TTAGTTTATAGGAAATTGC ATT GTAACTACCTATAAATTAA TTATTTTGCAAGTTG TERM 1666 1449700 - 1449670 - f 83 -10.6 -3.04461 | opp_overlap 1449667 1449670 1449690, overlap 1449682 TATCCATTTCTAATA CTGAGCGTAAAA TAAACGT TCTTACGCTCAG TAAGTTTTAAATCTG Cphy_1150 1449953 - 1450252 + | hypothetical protein Cphy_1151 1450218 - 1450982 + | binding-protein-dependent transport systems inner membrane component TERM 1667 1451876 - 1451864 - g 72 -7.7 -3.67877 | opp_overlap 1451872 ATTCCTTAAGAAAGA TGCTG ATA CAGCA AAAGCATTTTTCTGT Cphy_1152 1451136 - 1452158 + | NMT1/THI5-like domain-containing protein TERM 1668 1452839 - 1452827 - g 78 -5.5 -4.90869 | ATTATGAAGGAAAAA CGTCC AAG AGACG AAGAATTTTTGTTAA Cphy_1153 1452167 - 1452907 + | ABC transporter related Cphy_1154 1453274 - 1455127 + | ATP-dependent DNA helicase RecQ TERM 1669 1455129 - 1455152 + F 100 -13.9 -3.95022 | opp_overlap 1455121 1455129 TAATAAATAGTTAAA CAGGTGGGC TGTTAT GCCCACCTG TTTCGTATTACTAGG TERM 1670 1455152 - 1455129 - f 100 -13.9 -3.84931 | opp_overlap 1455129, overlap 1455121 TAATAAATAGTTAAA CAGGTGGGC TGTTAT GCCCACCTG TTTCGTATTACTAGG TERM 1671 1455229 - 1455193 - f 95 -8.9 -5.20781 | opp_overlap 1455193 GACTATAAAAGAAAA TGCTAGAGTATACGA GTTTTTT TCGTACACCCTAACA TTTATTATAGAGTCT TERM 1672 1455280 - 1455265 - f 72 -2.6 -5.37865 | TCAATAACGAAAAAA TGTTAA AGTT CTAACA GTTAGTAAAATTGCA Cphy_1155 1455562 - 1461411 + | nucleic acid binding OB-fold tRNA/helicase-type TERM 1673 1461447 - 1461477 + F 100 -14.8 -3.75657 | opp_overlap 1461447, overlap 1461437 1461451 GACTTAATTTATAAA GGGCTGCCACACTA GTG TAGTGTGGCATTCC TTGTTAGGTATTTGC TERM 1674 1461477 - 1461447 - f 100 -12.6 -3.98083 | opp_overlap 1461447 1461437 1461451 GACTTAATTTATAAA GGGCTGCCACACTA GTG TAGTGTGGCATTCC TTGTTAGGTATTTGC TERM 1675 1461451 - 1461473 + F 100 -15 -3.55304 | opp_overlap 1461447, overlap 1461447 1461437 TAATTTATAAAGGGC TGCCACACTA GTG TAGTGTGGCA TTCCTTGTTAGGTAT TERM 1676 1462052 - 1462042 - g 70 -6.8 -4.11216 | opp_overlap 1462041 CCTCTAGTTCTAAAA GGAG TTT CTCC GATTTTAGCTACTAT TERM 1677 1462267 - 1462283 + G 71 -7.3 -3.85704 | overlap 1462277 CGGGCTTCGGACTCG CCATTGA AAA TCAGTGG TTTGCTGATTAGTGG Cphy_1156 1461517 - 1462674 + | YibE/F family protein TERM 1678 1462836 - 1462802 - f 91 -7.3 -5.20781 | opp_overlap 1462802 TATTATAAAAGAAAA TGCTAGAGTATATGA GTTTT TCATACACTCTGACA TTTGTTAAAAATGCA TERM 1679 1463150 - 1463174 + F 79 -3.6 -5.55769 | opp_overlap 1463150, overlap 1463156 GTCATCATTCAAAAA GGATGTGA CGTTAGAAA TCACGTCC TTTTTTCTTGTCAAG TERM 1680 1463417 - 1463399 - g 87 -2.4 -5.96521 | opp_overlap 1463413 AGTAATGAAAAAAAA TGCAAAAC GGT ATTTGGCA GTGCTATTGAGTATC Cphy_1157 1463388 - 1470152 + | nucleic acid binding OB-fold tRNA/helicase-type TERM 1681 1470180 - 1470226 + T 100 -14 -2.882 | opp_overlap 1470188, overlap 1470188 1470192 AGGTATAAGTCTTAA TTAATGAAGGGCTACCACACTA ATT TAGTGTGGTATTCCTTTGTTAG GTTTAGGTATTTACC TERM 1682 1470218 - 1470188 - T 87 -11.2 -3.45366 | opp_overlap 1470180 1470188 1470192 GTCTTAATTAATGAA GGGCTACCACACTA ATT TAGTGTGGTATTCC TTTGTTAGGTTTAGG TERM 1683 1470188 - 1470218 + T 100 -13.4 -4.29326 | opp_overlap 1470188, overlap 1470180 1470192 GTCTTAATTAATGAA GGGCTACCACACTA ATT TAGTGTGGTATTCC TTTGTTAGGTTTAGG TERM 1684 1470192 - 1470214 + T 100 -13.6 -3.70412 | opp_overlap 1470188, overlap 1470188 1470180 TAATTAATGAAGGGC TACCACACTA ATT TAGTGTGGTA TTCCTTTGTTAGGTT Cphy_1158 1470873 - 1470229 - | GCN5-related N-acetyltransferase Cphy_1159 1471604 - 1471287 - | hypothetical protein TERM 1685 1472410 - 1472393 - g 71 -4.2 -4.77165 | CGGGTTAGAAGAAAA GATTCA GTATTT TGAATC AAGGGACGAGGAACG TERM 1686 1472754 - 1472743 - g 76 -5.8 -4.56883 | opp_overlap 1472753 CTAAGAGTAAAGAAA CCTC ATTT GAGG AGACGTTTCATGAAT Cphy_1160 1472040 - 1473704 + | DNA mismatch repair protein MutS domain-containing protein TERM 1687 1473897 - 1473918 + T 71 -8.7 -2.83271 | opp_overlap 1473899, overlap 1473895 GCATCGCTATTAGCA CATGGCATC TGTA GTTGCCATG TAGTTATGAAGGTAC Cphy_1161 1474178 - 1474017 - | heavy metal-binding domain-containing protein TERM 1688 1474057 - 1474075 + g 90 -3.9 -5.88565 | gap 1, opp_overlap 1474057 TGTTCAATACAATTA CGGATAGA TCCT TC-ATCCG TTTTTTTATTGTAAC Cphy_1162 1474462 - 1474250 - | cold-shock DNA-binding domain-containing protein Cphy_1163 1475031 - 1476437 + | cellulase TERM 1689 1476491 - 1476467 - f 74 -9.3 -2.99842 | opp_overlap 1476467, overlap 1476470 AAAATAATTTATAGA GAATGGGTTCA AAT CGAGCCCATTC TTTTTTGTGCGAAGC TERM 1690 1476467 - 1476491 + F 100 -10.8 -5.24129 | opp_overlap 1476467 1476470 AAAATAATTTATAGA GAATGGGTTC AAATC GAGCCCATTC TTTTTTGTGCGAAGC Cphy_1164 1476825 - 1477616 + | gluconate 5-dehydrogenase Cphy_1165 1478658 - 1477822 - | AraC family transcriptional regulator TERM 1691 1478998 - 1478986 - H 72 -2.7 -5.36965 | overlap 1478979 TAATAGTATAAAAAA CAATC CGG AATTG ATTTTTTAAGCTGAA Cphy_1166 1479120 - 1480112 + | UDP-glucose 4-epimerase TERM 1692 1480099 - 1480088 - f 70 -4.4 -4.8543 | opp_overlap 1480088 GAATTGGCATAAAAA CCAT CCCA ATGG ATTTAATTTATAGTT TERM 1693 1480331 - 1480305 - g 100 -19.6 -2.83677 | opp_overlap 1480312, overlap 1480307 1480309 AATTAAGTGATTATA CAGAGGATGTGC AAA GCACATCCTCTG AGGCAGAATCAAATA TERM 1694 1480329 - 1480307 - g 100 -16.4 -2.9627 | opp_overlap 1480312, overlap 1480305 1480309 TTAAGTGATTATACA GAGGATGTGC AAA GCACATCCTC TGAGGCAGAATCAAA TERM 1695 1480327 - 1480309 - g 93 -13.2 -3.03214 | opp_overlap 1480312, overlap 1480307 1480305 AAGTGATTATACAGA GGATGTGC AAA GCACATCC TCTGAGGCAGAATCA TERM 1696 1481533 - 1481509 - g 76 -4.3 -5.1523 | overlap 1481511 1481514 1481529 CTTAGAAGATAAAAA TCCAATGGATC AAG AATCCACTGCA AAACATACAGAATGG Cphy_1167 1480142 - 1481731 + | galactose-1-phosphate uridylyltransferase Cphy_1168 1482493 - 1481693 - | AraC family transcriptional regulator TERM 1697 1483834 - 1483816 - g 74 -9.6 -2.97255 | opp_overlap 1483820 1483823, overlap 1483818 CAAGATAAGAGGATA GAGCCTTG GGG CAAAGCTC CTAGTTTATTAGAGG TERM 1698 1483820 - 1483838 + G 70 -6.6 -4.16284 | opp_overlap 1483818 1483816, overlap 1483823 ATAAGAGGATAGAGC CTTGGGGC AAA GCTCCTAG TTTATTAGAGGATGT Cphy_1169 1482901 - 1484400 + | Alpha-N-arabinofuranosidase TERM 1699 1484443 - 1484483 + F 100 -7.1 -5.5112 | opp_overlap 1484447, overlap 1484447 1484452 TTGTGACCATTAATA ATAAGCTATCAAAGAAA TTTGTTT TTTCTTTGATAGCTTTG TTTTTTCTTGATAAG TERM 1700 1484447 - 1484479 + F 100 -12.3 -5.20735 | opp_overlap 1484447, overlap 1484443 1484452 GACCATTAATAATAA GCTATCAAAGAAA TTTGTTT TTTCTTTGATAGC TTTGTTTTTTCTTGA TERM 1701 1484479 - 1484447 - f 100 -12.3 -4.00445 | opp_overlap 1484447 1484443 1484452 GACCATTAATAATAA GCTATCAAAGAAA TTTGTTT TTTCTTTGATAGC TTTGTTTTTTCTTGA TERM 1702 1484452 - 1484463 + F 77 -3 -5.68438 | opp_overlap 1484447, overlap 1484447 1484443 TTAATAATAAGCTAT CAAA GAAA TTTG TTTTTTCTTTGATAG Cphy_1170 1484900 - 1485490 + | hypothetical protein Cphy_1171 1485517 - 1485879 + | hypothetical protein TERM 1703 1486002 - 1485965 - f 100 -15.9 -3.53012 | opp_overlap 1485969 1485974, overlap 1485969 1485974 GCTCCCCTTTTTAAA TGAACAAAAGCAGGTAT TTCA ATACCTGCTTTTGTTGA ATACTCAGAATGGTA TERM 1704 1485969 - 1485998 + F 100 -16.7 -3.09635 | opp_overlap 1485965 1485969 1485974, overlap 1485974 CCCTTTTTAAATGAA CAAAAGCAGGTAT TTCA ATACCTGCTTTTG TTGAATACTCAGAAT TERM 1705 1485998 - 1485969 - f 100 -16.7 -3.51232 | opp_overlap 1485969 1485974, overlap 1485965 1485974 CCCTTTTTAAATGAA CAAAAGCAGGTAT TTCA ATACCTGCTTTTG TTGAATACTCAGAAT TERM 1706 1485974 - 1485993 + F 100 -10.8 -4.69053 | opp_overlap 1485969 1485965 1485974, overlap 1485969 TTTAAATGAACAAAA GCAGGTAT TTCA ATACCTGC TTTTGTTGAATACTC TERM 1707 1485993 - 1485974 - f 100 -10.8 -4.84642 | opp_overlap 1485974 1485969, overlap 1485969 1485965 TTTAAATGAACAAAA GCAGGTAT TTCA ATACCTGC TTTTGTTGAATACTC TERM 1708 1486915 - 1486897 - g 70 -3.1 -4.94058 | CCAACCTAAAGAAAA TGGTGGA TACAT TCCAACA CATTATTCCTGATAT Cphy_1172 1486134 - 1487822 + | methyl-accepting chemotaxis sensory transducer TERM 1709 1487834 - 1487882 + F 91 -9.8 -4.43864 | gap 1, opp_overlap 1487837, overlap 1487835 1487837 ATAAGCCTAAAGCTA GAAGGGTGTTGATCCA-AAGATG TTAT CATTTTATGGATCAACGCCCTCA TTTTAATATATATTT TERM 1710 1487835 - 1487881 + F 100 -13.3 -3.24691 | gap 1, opp_overlap 1487837, overlap 1487834 1487837 TAAGCCTAAAGCTAG AAGGGTGTTGATCCA-AAGATG TTAT CATTTTATGGATCAACGCCCTC ATTTTAATATATATT TERM 1711 1487879 - 1487837 - f 90 -11.5 -3.47617 | gap 1, opp_overlap 1487835 1487834 1487837 AGCCTAAAGCTAGAA GGGTGTTGATCCA-AAGATG TTAT CATTTTATGGATCAACGCCC TCATTTTAATATATA TERM 1712 1487837 - 1487879 + F 100 -15.9 -3.17273 | gap 1, opp_overlap 1487837, overlap 1487835 1487834 AGCCTAAAGCTAGAA GGGTGTTGATCCA-AAGATG TTAT CATTTTATGGATCAACGCCC TCATTTTAATATATA Cphy_1173 1488340 - 1488792 + | hypothetical protein TERM 1713 1488886 - 1488912 + F 80 -5.2 -5.23644 | gap 1, opp_overlap 1488881 1488886 ATATAATAAATAAAA GGCTGAA-CGC TGGAAT GTGCTTCAGCC TTTTTGTATTTCGTT TERM 1714 1488912 - 1488886 - f 77 -4.5 -5.16038 | gap 1, opp_overlap 1488886, overlap 1488881 ATATAATAAATAAAA GGCTGAACGC TGGAATGT GC-TTCAGCC TTTTTGTATTTCGTT Cphy_1174 1489322 - 1491925 + | pyruvate formate-lyase Cphy_1175 1491961 - 1492752 + | glycyl-radical activating family protein Cphy_1176 1492951 - 1493310 + | microcompartments protein Cphy_1177 1493642 - 1494436 + | class II aldolase/adducin family protein TERM 1715 1494864 - 1494888 + G 75 -10.1 -2.78463 | TGAGATGGGACCATT TGGTGTGATTG GTG CAATAACACCA TGTACTAACCCAAGT Cphy_1178 1494484 - 1495872 + | aldehyde dehydrogenase Cphy_1179 1495895 - 1497094 + | alcohol dehydrogenase Cphy_1180 1497110 - 1497424 + | microcompartments protein TERM 1716 1497474 - 1497455 - f 78 -9.4 -3.18912 | opp_overlap 1497455 1497459, overlap 1497459 TGATGTATGTAGTAA TCAACTTG TTTG CAAGTTGA TTATATAGAGGATAA TERM 1717 1497455 - 1497474 + F 80 -9.4 -3.48924 | opp_overlap 1497455 1497459, overlap 1497459 TGATGTATGTAGTAA TCAACTTG TTTG CAAGTTGA TTATATAGAGGATAA Cphy_1181 1497514 - 1497816 + | microcompartments protein TERM 1718 1497877 - 1497866 - g 80 -5.8 -5.06585 | TAAATTAGATAAAAA GTCG AATT CGAC GAGAAAAGCTGAGAT TERM 1719 1498024 - 1498038 + G 75 -8.6 -3.61398 | opp_overlap 1498020 TAAATGAAGAGGTTA CTGTTG ATA CAACAG TTCTTAAGGAGGAAA Cphy_1182 1497843 - 1498337 + | microcompartments protein TERM 1720 1498710 - 1498695 - g 76 -2.4 -5.5604 | TTAACTAAGAAAAAA GACCTC ATGG GTGGCC AGTTTGCGGCAAACG Cphy_1183 1498518 - 1499159 + | propanediol utilization protein Cphy_1184 1499200 - 1499460 + | ethanolamine utilization protein EutN/carboxysome structural protein Ccml TERM 1721 1499519 - 1499531 + G 95 -10.5 -4.37527 | ATGGAATCTGTGGAG CCGGC GGA GCCGG TTTTCCTACTTATGC Cphy_1185 1499464 - 1500792 + | respiratory-chain NADH dehydrogenase domain-containing protein Cphy_1186 1500877 - 1501425 + | microcompartments protein Cphy_1187 1501898 - 1502671 + | DeoR family transcriptional regulator TERM 1722 1505326 - 1505314 - g 78 -6.3 -4.84359 | TCATTGGCAGAAAAA CCTTT GGA AAAGG AGTAGGGCAGCTCTT Cphy_1188 1502817 - 1505510 + | peptidase S41 TERM 1723 1505723 - 1505757 + F 74 -3 -5.4492 | gap 1 AGATTTAAAGAAGAA GTTACAGTG-GGACT AATGTG AGTATACACTGTAAC TTTTTTGTATATATA Cphy_1189 1506141 - 1507238 + | peptidase domain-containing protein TERM 1724 1507283 - 1507244 - f 89 -12.4 -2.56186 | opp_overlap 1507249 1507256, overlap 1507239 1507249 1507256 AGAAAAGTAATATAT TGAAATAGAAAATGCTCC TTTG GGGGCATTTTCTATTTTA GGACAAGGAGAAGTT TERM 1725 1507278 - 1507249 - f 100 -12.3 -3.77177 | opp_overlap 1507249 1507256, overlap 1507244 1507239 1507256 AGTAATATATTGAAA TAGAAAATGCTCC TTTG GGGGCATTTTCTA TTTTAGGACAAGGAG TERM 1726 1507249 - 1507278 + F 100 -14.5 -4.07568 | opp_overlap 1507249 1507244 1507239 1507256, overlap 1507256 AGTAATATATTGAAA TAGAAAATGCTCC TTTG GGGGCATTTTCTA TTTTAGGACAAGGAG TERM 1727 1507256 - 1507271 + F 83 -6.8 -4.89567 | opp_overlap 1507249 1507244 1507239 1507256, overlap 1507249 TATTGAAATAGAAAA TGCTCC TTTG GGGGCA TTTTCTATTTTAGGA TERM 1728 1507271 - 1507256 - f 70 -4.6 -4.80455 | opp_overlap 1507256 1507249, overlap 1507249 1507244 1507239 TATTGAAATAGAAAA TGCTCC TTTG GGGGCA TTTTCTATTTTAGGA Cphy_1190 1507360 - 1507611 + | hypothetical protein TERM 1729 1507739 - 1507704 - T 81 -2.1 -6.01725 | gap 2, opp_overlap 1507704 AATAAAAAGAAAAAA TGCCAGTCAAAAAATCT TTTA AGATTTTT-GAA-GGCA TTTTTTTATTGCTTC TERM 1730 1507704 - 1507739 + T 78 -2.1 -5.87996 | gap 2, opp_overlap 1507704 AATAAAAAGAAAAAA TGCCAGTCAAAAAATCT TTTA AGATTTTT-GAA-GGCA TTTTTTTATTGCTTC Cphy_1191 1508087 - 1507722 - | DtxR family iron dependent repressor Cphy_1192 1508346 - 1508567 + | FeoA family protein Cphy_1193 1508633 - 1508854 + | FeoA family protein TERM 1731 1509578 - 1509554 - g 71 -5 -4.68424 | gap 1, overlap 1509555 CAATTGATCGAAAAA TCACCTC-GCT TTTC AGCAGAGGTGG AAGAAGCAATCGAGA TERM 1732 1509577 - 1509555 - g 70 -8.5 -3.40331 | gap 1, overlap 1509554 AATTGATCGAAAAAT CACCTC-GCT TTTC AGCAGAGGTG GAAGAAGCAATCGAG Cphy_1194 1509047 - 1511191 + | ferrous iron transport protein B Cphy_1195 1511472 - 1511957 + | ferric uptake regulator family protein TERM 1733 1512023 - 1512007 - g 76 -5.2 -4.91109 | TTGTCAGTATAAAAA GATATG TCAAT CATATC AATGCAAGGCAAAGG Cphy_1196 1511954 - 1512241 + | hypothetical protein TERM 1734 1512662 - 1512680 + F 75 -8.2 -3.67296 | opp_overlap 1512661 1512656 TTGGTACAAGTAATT GTATGACT AAT GGTCATAC TTTACCTGCGTCCTA Cphy_1197 1512878 - 1514881 + | peptidoglycan binding domain-containing protein TERM 1735 1514924 - 1514952 + F 100 -17.5 -5.71712 | overlap 1514920 TTTTATGTGTTTCAT GCCAGGCATGGCT ATT AGTCGTGCCTGGC TTTTTTTATATAAAG Cphy_1198 1515105 - 1515992 + | hypothetical protein Cphy_1199 1516055 - 1516924 + | glycosyltransferase TERM 1736 1517475 - 1517443 - g 75 -5.7 -4.77778 | AACAAATATATAAAA CTTGCGGATTAAAGA TAG TATTTAATCTACAAG GGGATATACAAAAGA TERM 1737 1517501 - 1517489 - g 71 -4.9 -4.61199 | AGGGGATATACAAAA GATAT CTG ATATC AATGGAAATTATTTA TERM 1738 1517574 - 1517589 + G 72 -4 -5.02606 | CCTATATTTTTATCT GTACTA TTTG TAGTGC TTTTCTTATTTCATA Cphy_1200 1517016 - 1517669 + | hypothetical protein Cphy_1201 1517785 - 1519074 + | exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase TERM 1739 1519449 - 1519433 - g 74 -8.1 -3.6993 | opp_overlap 1519444 GACTGATTTAAAAGA TAAATGG ATG CCATTTA AAATGCTTTATAATT TERM 1740 1519693 - 1519683 - g 74 -2.6 -5.27923 | GAATCCCAGAAAAAA TTTT ACA AAAA TGCAATCTACGGGGG Cphy_1202 1519203 - 1519721 + | oligosaccharide biosynthesis protein Alg14-like protein Cphy_1203 1519718 - 1520227 + | glycosyltransferase family 28 protein Cphy_1204 1520250 - 1521479 + | glycosyl transferase group 1 Cphy_1205 1521488 - 1522399 + | glycosyltransferase TERM 1741 1522634 - 1522616 - g 76 -6.2 -4.68451 | AAAAATAATAATAAA TTTTATAT TTT ATATAAAA GGATATATGAAATAA Cphy_1206 1522421 - 1523494 + | glycosyl transferase group 1 TERM 1742 1524552 - 1524538 - g 75 -10 -2.76162 | overlap 1524537 TATGTTAGGTCAAAG TGTGGG GTT CCCACA AATGGCGAATGGGGA Cphy_1207 1523507 - 1524619 + | putative hexapeptide transferase family protein Cphy_1208 1524656 - 1525936 + | O-antigen polymerase TERM 1743 1526827 - 1526801 - g 78 -6 -4.81734 | AAAGATGACCAAAAA GAATATGAAAAG ACA CTTTTTACATTC CAAAGAATGATATCC TERM 1744 1527023 - 1527013 - g 70 -8.2 -3.40073 | opp_overlap 1527012 1527013 AGTTTTACGAAGTAA GGGG AAA CCCC ATTTAGCACTTTTAG Cphy_1209 1525949 - 1527427 + | polysaccharide biosynthesis protein TERM 1745 1528196 - 1528213 + G 74 -8.5 -3.67775 | GGGATGTCTTTTGAT GCTAGAA TTGG TTCTAGC TTCTTAAATGCAGGT Cphy_1210 1527470 - 1528762 + | nucleotide sugar dehydrogenase Cphy_1211 1528897 - 1529910 + | NAD-dependent epimerase/dehydratase Cphy_1212 1529939 - 1530664 + | protein-tyrosine-phosphatase TERM 1746 1530723 - 1530733 + G 72 -4 -4.91084 | AGAGATCAATCTTGG TGAA ATA TTCA TTTTATTATTGCATA TERM 1747 1531242 - 1531257 + G 70 -5.4 -4.40181 | AAGTGGGATAATAGG GGCATT AATC AGTGCC TTTGTTATAATATTT Cphy_1213 1530685 - 1532133 + | exopolysaccharide tyrosine-protein kinase TERM 1748 1532243 - 1532279 + T 87 -8.8 -4.15864 | opp_overlap 1532239 1532247, overlap 1532245 1532247 TTAGTATAAAATAGT GAAACAGCCACCTTTG CTTTT TAAAGGTGGCTGTCTG TTTATGCTTATTATC TERM 1749 1532245 - 1532277 + T 93 -11.4 -3.65963 | opp_overlap 1532239 1532247, overlap 1532243 1532247 AGTATAAAATAGTGA AACAGCCACCTTTG CTTTT TAAAGGTGGCTGTC TGTTTATGCTTATTA TERM 1750 1532275 - 1532247 - T 100 -13.3 -3.8679 | opp_overlap 1532245 1532243 1532247, overlap 1532239 TATAAAATAGTGAAA CAGCCACCTTT GCTTTTT AAAGGTGGCTG TCTGTTTATGCTTAT TERM 1751 1532247 - 1532275 + T 100 -14 -3.39017 | opp_overlap 1532247 1532239, overlap 1532245 1532243 TATAAAATAGTGAAA CAGCCACCTTTG CTTTT TAAAGGTGGCTG TCTGTTTATGCTTAT Cphy_1214 1532984 - 1532403 - | hypothetical protein Cphy_1215 1534347 - 1533079 - | hypothetical protein Cphy_1216 1534588 - 1534424 - | ribose 5-phosphate isomerase Cphy_1217 1535116 - 1535502 + | hypothetical protein TERM 1752 1536332 - 1536365 + F 100 -6.9 -5.77632 | gap 1, opp_overlap 1536332 AGAGGCTTGATTATA GTCGTGAGTATCTT TAAAAAC AGGATAC-CACGAC TTTTTTTGTGCTTTT TERM 1753 1537796 - 1537780 - g 79 -7.3 -4.50058 | TACCCACAAGTAAAA GACTATG CAG CACAGTC AGAGGGAGTTGTGAA Cphy_1218 1536445 - 1538409 + | DNA mismatch repair protein MutS domain-containing protein Cphy_1219 1538568 - 1539884 + | xylose isomerase TERM 1754 1540002 - 1539962 - f 71 -7.7 -3.5518 | gap 1, opp_overlap 1539962 1539964, overlap 1539964 CGAATATCTATATAA TAGGGCGGTCACATCAAT CTTGGT ATTG-TGTGATCGCCCTG TTCTTATTTATGATA TERM 1755 1539962 - 1540002 + F 100 -12.1 -4.17309 | gap 1, opp_overlap 1539962 1539964, overlap 1539964 CGAATATCTATATAA TAGGGCGGTCACATCAAT CTTGGT ATTG-TGTGATCGCCCTG TTCTTATTTATGATA TERM 1756 1539964 - 1540000 + F 95 -12.5 -3.66744 | gap 1, opp_overlap 1539964 1539962, overlap 1539962 AATATCTATATAATA GGGCGGTCACATCAAT CTTGGT ATTG-TGTGATCGCCC TGTTCTTATTTATGA TERM 1757 1540000 - 1539964 - f 83 -10.3 -3.3464 | gap 1, opp_overlap 1539962 1539964, overlap 1539962 AATATCTATATAATA GGGCGGTCACATCAAT CTTGGT ATTG-TGTGATCGCCC TGTTCTTATTTATGA TERM 1758 1540578 - 1540623 + G 89 -12.2 -3.42574 | gap 1, opp_overlap 1540577 1540575 1540578 1540582, overlap 1540582 1540620 GTATAACAACAATAG GTAACCATGCTTTCTATGATT GCAGA AAAC-TAGAAAGCATGGTTGC TTCTGATGCAATTCA TERM 1759 1540623 - 1540578 - g 74 -10 -2.75496 | gap 1, opp_overlap 1540578 1540582 1540620, overlap 1540577 1540575 1540582 GTATAACAACAATAG GTAACCATGCTTTCTATGATT GCAGA AAAC-TAGAAAGCATGGTTGC TTCTGATGCAATTCA TERM 1760 1540619 - 1540582 - g 75 -9.4 -3.26097 | gap 1, opp_overlap 1540578 1540582, overlap 1540578 1540577 1540575 AACAACAATAGGTAA CCATGCTTTCTATGATT GCAGA AAAC-TAGAAAGCATGG TTGCTTCTGATGCAA TERM 1761 1540582 - 1540619 + G 78 -9.4 -3.47322 | gap 1, opp_overlap 1540582 1540578 1540577 1540575, overlap 1540578 AACAACAATAGGTAA CCATGCTTTCTATGATT GCAGA AAAC-TAGAAAGCATGG TTGCTTCTGATGCAA Cphy_1220 1540388 - 1541281 + | hypothetical protein TERM 1762 1541519 - 1541502 - g 76 -4.2 -5.0916 | opp_overlap 1541502 1541504 TTTGTAATAGAAAAA TACACT TATGAT AGTGTA TATGTAAACCGTTCC TERM 1763 1542638 - 1542658 + G 73 -6.2 -4.37658 | TTATACTTTTGGTAT GGAGCATT ATGGG AATGTTCC TTTTATAGAACCATT Cphy_1221 1541304 - 1543175 + | hypothetical protein Cphy_1222 1543165 - 1544682 + | AAA ATPase Cphy_1223 1546171 - 1545011 - | ABC-2 type transporter Cphy_1224 1547300 - 1546158 - | ABC-2 type transporter TERM 1764 1546341 - 1546355 + g 71 -4.2 -4.84311 | TAATAACGGAACATT CACTTC TAT GACGTG TTTTATTGTATCAAC Cphy_1225 1548244 - 1547312 - | ABC transporter related TERM 1765 1548678 - 1548701 + H 90 -6 -5.58209 | opp_overlap 1548678 TAAACATGTGAAAGA CAGGTGCATT GTAT GGTGTACCTG TTTTTTTGCGTTTAA Cphy_1226 1548842 - 1549732 + | methyltransferase Cphy_1227 1549735 - 1550889 + | cystathionine gamma-synthase Cphy_1228 1551030 - 1551938 + | pyridoxal-5'-phosphate-dependent protein beta subunit TERM 1766 1552905 - 1552877 - g 88 -7.6 -4.7629 | TGACCAAGGCAAAAA TAACTCCTTCTA TCTAG CAGAAGAAGTTA AGAGTACTTATGACT Cphy_1229 1552260 - 1553165 + | MarR family transcriptional regulator TERM 1767 1553523 - 1553498 - f 74 -7.6 -3.90086 | opp_overlap 1553498 AAAGAACAAGGGAAA CAGGGTGCAT GAGTAT ATGTACCCTG TTTTTTTGCGGGAAA TERM 1768 1553498 - 1553523 + F 100 -10.5 -5.40072 | opp_overlap 1553498 AAAGAACAAGGGAAA CAGGGTGCATG AGTA TATGTACCCTG TTTTTTTGCGGGAAA Cphy_1230 1553670 - 1554713 + | ABC transporter related Cphy_1231 1554697 - 1555377 + | binding-protein-dependent transport systems inner membrane component Cphy_1232 1555390 - 1556349 + | L-lactate dehydrogenase Cphy_1233 1556433 - 1557260 + | NLPA lipoprotein TERM 1769 1557310 - 1557262 - f 100 -20.7 -3.79251 | overlap 1557263 CATGGGAGGAGTAAA TTCTTTCAATTGGGATGTTACAA TAT TTGTAACATCCCAATTGAAAGCG GTGTGAAGTTATGGC TERM 1770 1557309 - 1557263 - f 100 -24.2 -2.87229 | overlap 1557262 ATGGGAGGAGTAAAT TCTTTCAATTGGGATGTTACAA TAT TTGTAACATCCCAATTGAAAGC GGTGTGAAGTTATGG TERM 1771 1558437 - 1558452 + G 76 -7.6 -4.08706 | opp_overlap 1558448, overlap 1558436 TTTGGCCATGCTGGG GATGGA AACA TCCATC TTTGTATGGTAAGAG Cphy_1234 1557321 - 1558700 + | FAD linked oxidase domain-containing protein TERM 1772 1559345 - 1559325 - g 85 -7 -4.90869 | ACGATGAATTAAAAA TTATTGCA GACCT TGCAATAA AATATGATACTTATG Cphy_1235 1558778 - 1559959 + | aminotransferase class I and II TERM 1773 1560601 - 1560589 - g 78 -6.3 -4.73912 | AGAAAAAGTATAAAA GCAAA GGC TTTGC AGCAGGCTGTTCCCG Cphy_1236 1560165 - 1560710 + | metal dependent phophohydrolase TERM 1774 1560798 - 1560829 + F 75 -9.6 -2.98387 | opp_overlap 1560796 1560798, overlap 1560795 1560793 TACAGATTTGAAATA CTGAGTGAGAGA CTTTTTTA TCTTTCACTCAG TGATCTTTTATCAGC TERM 1775 1560829 - 1560798 - f 73 -8.1 -3.40558 | opp_overlap 1560798 1560795 1560793, overlap 1560796 TACAGATTTGAAATA CTGAGTGAGAGAC TTTTTT ATCTTTCACTCAG TGATCTTTTATCAGC Cphy_1237 1561213 - 1562964 + | ABC transporter related Cphy_1238 1562954 - 1564849 + | ABC transporter related TERM 1776 1564908 - 1564883 - f 73 -9 -2.81872 | opp_overlap 1564883, overlap 1564880 TTGATTATAATATTA GGTCGCTTGT TTTTTT ACAAGCGGCC TTTTTGATTTACAAG TERM 1777 1564883 - 1564908 + F 100 -11.2 -4.98531 | opp_overlap 1564880 1564883 TTGATTATAATATTA GGTCGCTTGT TTTTTT ACAAGCGGCC TTTTTGATTTACAAG Cphy_1239 1565060 - 1566136 + | integral membrane sensor signal transduction histidine kinase Cphy_1240 1566225 - 1566848 + | two component LuxR family transcriptional regulator Cphy_1241 1566938 - 1567600 + | two component transcriptional regulator TERM 1778 1567805 - 1567789 - g 70 -2.9 -5.10154 | ACGCAAAAGGAAAAA CTTCGAC ATA GCCTAAG TGATATTTTTGATAA Cphy_1242 1567627 - 1568622 + | integral membrane sensor signal transduction histidine kinase Cphy_1243 1568748 - 1569437 + | ABC transporter related Cphy_1244 1569430 - 1571748 + | hypothetical protein Cphy_1245 1571956 - 1573083 + | nuclease SbcCD, D subunit TERM 1779 1575119 - 1575108 - g 71 -4.4 -4.73864 | TTAATCAAGAGAAAA TAGC AATT GCTA CTGTCCTAGGTCAGA Cphy_1246 1573127 - 1576243 + | SMC domain-containing protein TERM 1780 1576341 - 1576311 - T 74 -5.4 -4.78149 | opp_overlap 1576316, overlap 1576313 1576316 GGTAGAATTTAAAAA TATCAGGAGGGATT TTG AATCCCTCCTTTTC TTTGAATTAATCACT TERM 1781 1576339 - 1576313 - T 79 -8 -4.00465 | opp_overlap 1576316, overlap 1576311 1576316 TAGAATTTAAAAATA TCAGGAGGGATT TTG AATCCCTCCTTT TCTTTGAATTAATCA TERM 1782 1576316 - 1576336 + T 100 -14.1 -4.94058 | opp_overlap 1576316 1576313 1576311 AATTTAAAAATATCA GGAGGGATT TTG AATCCCTCC TTTTCTTTGAATTAA TERM 1783 1576336 - 1576316 - T 100 -14.1 -3.03505 | opp_overlap 1576316, overlap 1576313 1576311 AATTTAAAAATATCA GGAGGGATT TTG AATCCCTCC TTTTCTTTGAATTAA Cphy_1247 1577199 - 1576393 - | hypothetical protein TERM 1784 1577438 - 1577380 - R 74 -6.3 -4.39166 | gap 2, opp_overlap 1577381 1577381 1577383 1577396 1577400, overlap 1577381 TGTCATAGATTAAAA CGAGAACACTCAAATACCTAGGAGCGTAG TCG CTAC-CTTTCAGGTTTTTAAGTGTTCTC- ACTTTTTTATAGGAG TERM 1785 1577381 - 1577438 + r 90 -12.3 -2.83915 | gap 1, opp_overlap 1577380 1577381, overlap 1577381 1577383 1577396 1577400 GTCATAGATTAAAAC GAGAACACTCAAATACCTAGGAGCGTAG TCG CTACCTTTC-AGGTTTTTAAGTGTTCTC ACTTTTTTATAGGAG TERM 1786 1577438 - 1577381 - R 90 -12.3 -3.23018 | gap 1, opp_overlap 1577381 1577381 1577383 1577396 1577400, overlap 1577380 GTCATAGATTAAAAC GAGAACACTCAAATACCTAGGAGCGTAG TCG CTAC-CTTTCAGGTTTTTAAGTGTTCTC ACTTTTTTATAGGAG TERM 1787 1577383 - 1577436 + r 73 -9.1 -2.96157 | gap 1, opp_overlap 1577380 1577381, overlap 1577381 1577381 1577396 1577400 CATAGATTAAAACGA GAACACTCAAATACCTAGGAGCGTAG TCG CTACCTTTC-AGGTTTTTAAGTGTTC TCACTTTTTTATAGG Cphy_1248 1578117 - 1577527 - | dipicolinate synthase subunit B Cphy_1249 1579018 - 1578134 - | dipicolinate synthase subunit A Cphy_1250 1579431 - 1580060 + | phosphoglycerate mutase Cphy_1251 1580870 - 1580100 - | Cof-like hydrolase TERM 1788 1580664 - 1580642 - G 79 -7 -4.53303 | CACTTTTATACAAAA CCTTATCTTG ATA CATGACAAGG GAACCATTTTCACAT TERM 1789 1581083 - 1581115 + H 81 -10.7 -2.97021 | opp_overlap 1581086, overlap 1581086 TATTCCTGTTCATAG CAAGAAAAAGTTAGC GGA GCGTACTTTTTCTTG TATAGTATTTACAAA TERM 1790 1581508 - 1581521 + G 78 -5.3 -4.94222 | CTGCTAACCAGTTAG TGCTA TCTG TAGCA TTTTTATCGGTTATT TERM 1791 1581671 - 1581689 + G 74 -8.2 -3.74693 | opp_overlap 1581674, overlap 1581674 ATTTATTGCGATATA TAATGCAG GAG CTGCATTG TTTCGTGCAATGGGG TERM 1792 1581674 - 1581686 + G 76 -7.7 -4.00756 | opp_overlap 1581674, overlap 1581671 TATTGCGATATATAA TGCAG GAG CTGCA TTGTTTCGTGCAATG TERM 1793 1582407 - 1582429 + G 74 -4.8 -4.76874 | overlap 1582398 1582408 TTTACTTCCATTTCG TCGATGTGGA TTT TCCGCGTTGG TTTTAGTTTTGTATT TERM 1794 1582575 - 1582557 - g 76 -4.5 -5.08824 | opp_overlap 1582561 GGCGGATGGAAAAAA CATGCAC GAATG GAGCATG CGCGTTAACTAAGTA Cphy_1252 1581246 - 1582583 + | MATE efflux family protein Cphy_1253 1582741 - 1583919 + | metallophosphoesterase TERM 1795 1585054 - 1585033 - g 83 -5.8 -5.22137 | AAGGATAAAACAAAA CGTCACGA AGAATA TCGAGACG AATATGTGAAATTTC Cphy_1254 1584256 - 1585329 + | GDSL family lipase TERM 1796 1585409 - 1585383 - T 100 -10.3 -5.8187 | opp_overlap 1585383 TAGTGAATAAAAAAA TCAGTCATAGA ATTTA TCCATGACTGA TTTTTTTCTAATTAG TERM 1797 1585383 - 1585409 + T 100 -8.1 -5.71983 | opp_overlap 1585383 TAGTGAATAAAAAAA TCAGTCATAGA ATTTA TCCATGACTGA TTTTTTTCTAATTAG Cphy_1255 1585960 - 1585436 - | peptidylprolyl isomerase TERM 1798 1586179 - 1586163 - H 77 -8.1 -3.8372 | ATGTCAAGAATATAA TGTATCA AAA TGATACA AACACATCGTAAAAG Cphy_1256 1586394 - 1587647 + | hypothetical protein TERM 1799 1587957 - 1587945 - g 73 -6.3 -4.48903 | GAAAACAGATTAAAA TCGTA CAG TACGA TGATAAAAATTCCTC Cphy_1257 1587695 - 1588855 + | extracellular ligand-binding receptor Cphy_1258 1588942 - 1589817 + | inner-membrane translocator Cphy_1259 1589822 - 1590895 + | inner-membrane translocator Cphy_1260 1590919 - 1591689 + | ABC transporter related TERM 1800 1592272 - 1592260 - g 84 -7.7 -4.68384 | opp_overlap 1592259 1592255 1592260 ATTGATTGAACAAAA TGCCA ATA TGGCA CTTAGTGTATCAAAT Cphy_1261 1591682 - 1592389 + | ABC transporter related TERM 1801 1592552 - 1592536 - g 74 -5.1 -4.79752 | opp_overlap 1592536, overlap 1592537 TGCAAGAAGAGAAAA GTGCAAC AAA GTTGCAG TAATATCAGGTGGTG TERM 1802 1592551 - 1592537 - g 73 -8.6 -3.46767 | opp_overlap 1592536, overlap 1592536 GCAAGAAGAGAAAAG TGCAAC AAA GTTGCA GTAATATCAGGTGGT Cphy_1262 1592405 - 1593403 + | dihydroxyacetone kinase, DhaK subunit TERM 1803 1593929 - 1593913 - g 77 -10.9 -2.5409 | ACAAGCTGCAATTGA TGGTGCT GAG AGCACCA GGGATATGGAAGCAG Cphy_1263 1593416 - 1594063 + | dihydroxyacetone kinase, L subunit Cphy_1264 1594143 - 1594628 + | hypothetical protein TERM 1804 1594632 - 1594674 + F 100 -12.9 -4.3739 | gap 1, overlap 1594637 1594671 AAACAGAAATAAGTT GAGAGGGGTAACTGCGGGAG ACTA CTTTTGCAGTT-CCCCTTTC TTTTGTAAAGAGATA TERM 1805 1594637 - 1594670 + F 100 -10.3 -4.77173 | overlap 1594632 GAAATAAGTTGAGAG GGGTAACTGCGGGAG ACTA CTTTTGCAGTTCCCC TTTCTTTTGTAAAGA Cphy_1265 1594834 - 1596525 + | Fis family transcriptional regulator TERM 1806 1596608 - 1596649 + F 87 -4.5 -5.79595 | opp_overlap 1596597 CAAATTATAAAAGAT GCTTTTGTAAGATAGGTGA GTAA TCATCTGTTAAGCAAAAGC TTTTTTATTTTAAAA TERM 1807 1597167 - 1597145 - g 70 -2.8 -5.14163 | opp_overlap 1597145 ATTTATTAAGAAAAA TATGAGTAAT TTT ACTACTTATA TTTTATACGATGGCG TERM 1808 1597475 - 1597495 + G 70 -5.5 -4.46854 | GAAGATAAGTGTAAT GGATGATTA TAT TGATTATCC TTTATTATTAGATAC Cphy_1266 1596867 - 1597529 + | hypothetical protein TERM 1809 1597575 - 1597599 + F 79 -3.5 -5.5208 | AAAAGAATACGAAAA GGCCAGGTGAT TAT GTTGCTTGGTC TTTTTTATATTATAA Cphy_1267 1597743 - 1598132 + | hypothetical protein TERM 1810 1598201 - 1598243 + T 90 -10 -3.98114 | opp_overlap 1598203 1598209, overlap 1598206 1598209 ATAATTACATATAAG GATAATAAGATGACTGCTCC CTT GAAGCAGTCATCTTGTTAAG TTATTCTATTAAATT TERM 1811 1598241 - 1598203 - T 100 -17 -2.93113 | opp_overlap 1598201 1598206 1598209, overlap 1598209 AATTACATATAAGGA TAATAAGATGACTGCTCC CTT GAAGCAGTCATCTTGTTA AGTTATTCTATTAAA TERM 1812 1598206 - 1598238 + T 100 -14.3 -3.33117 | opp_overlap 1598203 1598209, overlap 1598201 1598209 TACATATAAGGATAA TAAGATGACTGCTCC CTT GAAGCAGTCATCTTG TTAAGTTATTCTATT TERM 1813 1598209 - 1598235 + T 100 -13.8 -3.78556 | opp_overlap 1598209 1598203, overlap 1598206 1598201 ATATAAGGATAATAA GATGACTGCTCC CTT GAAGCAGTCATC TTGTTAAGTTATTCT TERM 1814 1598235 - 1598209 - T 100 -16 -3.91959 | opp_overlap 1598206 1598201 1598209, overlap 1598203 ATATAAGGATAATAA GATGACTGCTCC CTT GAAGCAGTCATC TTGTTAAGTTATTCT Cphy_1268 1598955 - 1598302 - | hypothetical protein Cphy_1269 1599234 - 1600040 + | hypothetical protein Cphy_1270 1600203 - 1600520 + | PadR-like family transcriptional regulator Cphy_1271 1600521 - 1601426 + | hypothetical protein TERM 1815 1601616 - 1601634 + G 71 -8.9 -3.19602 | overlap 1601614 CTAAAGTTCGTATTT TGGAAGG AGATA CCTTCCA TGTTGATGTAAAAAA Cphy_1272 1601423 - 1602289 + | hypothetical protein Cphy_1273 1602328 - 1602504 + | phage shock protein C, PspC TERM 1816 1602564 - 1602600 + F 74 -4 -5.29445 | opp_overlap 1602585 AAACTAAAATTAATA GGGCT-AATTTTGTGTTT AAT AGAC-CAAAATTCAGTCC TTTTTCTTATTCAAG TERM 1817 1604034 - 1604024 - g 78 -4 -5.27476 | GTGAAGAAAACAAAA TTAG TTC CTAA AGATGTGAATCTGAC Cphy_1274 1602923 - 1604707 + | arginyl-tRNA synthetase TERM 1818 1604758 - 1604730 - f 71 -7.5 -3.55622 | opp_overlap 1604731, overlap 1604731 1604733 TCTAAGCGCGCGAAA GGACTGGAAAG TAACGAG CTTTCCAGTCT TTTTTTATCTTCGAG TERM 1819 1604757 - 1604731 - f 82 -11 -2.73159 | opp_overlap 1604731, overlap 1604730 1604733 CTAAGCGCGCGAAAG GACTGGAAAG TAACGAG CTTTCCAGTC TTTTTTTATCTTCGA TERM 1820 1604731 - 1604757 + F 100 -11.7 -5.80817 | opp_overlap 1604731 1604730 1604733 CTAAGCGCGCGAAAG GACTGGAAAGT AACGA GCTTTCCAGTC TTTTTTTATCTTCGA TERM 1821 1604880 - 1604892 + F 71 -5.5 -4.65182 | overlap 1604884 CATGGGAAACCTAGA GTGGC AAA GCTAC TTTGTTTAATTTATA TERM 1822 1604884 - 1604896 + F 70 -6.3 -4.16182 | overlap 1604880 GGAAACCTAGAGTGG CAAAG CTA CTTTG TTTAATTTATAGTGA Cphy_1275 1604941 - 1606257 + | hypothetical protein TERM 1823 1607512 - 1607492 - g 78 -4 -5.41143 | CAGTGGTGAAAAAAA TGAATTGC GTAAA GCAGTTCA AGCACTTCGTGAGCA Cphy_1276 1606560 - 1607687 + | hypothetical protein TERM 1824 1607750 - 1607719 - T 100 -12.5 -4.74598 | opp_overlap 1607719 TAAATTTAAAATAAA TGCCATATGATAG GGACAA CTACCATATGGCA TTTTTAAAAGCATTT TERM 1825 1607719 - 1607750 + T 95 -10.3 -4.58685 | opp_overlap 1607719 TAAATTTAAAATAAA TGCCATATGATAG GGACAA CTACCATATGGCA TTTTTAAAAGCATTT TERM 1826 1607794 - 1607809 + T 85 -9 -3.99352 | TATACTCATTCCCCT GGAAGC TACT GCTTCC TTCTGTTTATTACTT Cphy_1277 1608065 - 1607799 - | glutaredoxin-like protein TERM 1827 1608460 - 1608475 + G 72 -7.6 -3.77437 | opp_overlap 1608460 GAGTAATTGTGAAGA GGCATT GGTT AATGCC TTATATATTGTTGAT Cphy_1278 1608257 - 1608940 + | hypothetical protein TERM 1828 1609124 - 1609112 - f 70 -6.3 -4.3277 | opp_overlap 1609112 CACATACAAGAGAAA TCCTT TGA AAGGA GGCTTTGAATGGAGT Cphy_1279 1609133 - 1609510 + | GntR family transcriptional regulator TERM 1829 1610259 - 1610249 - g 72 -4 -4.94672 | opp_overlap 1610249 AAAGAACATCAAAAA TCTA TCG TAGA TTTGTATAAGGAAAT Cphy_1280 1609598 - 1610284 + | ABC transporter related TERM 1830 1610972 - 1610985 + G 80 -6.7 -4.77165 | ACATTTATGATTGAT GCCAT CTTT ATGGC TTTTGTTATAGCAGC Cphy_1281 1610306 - 1611049 + | hypothetical protein Cphy_1282 1611481 - 1611056 - | hypothetical protein Cphy_1283 1611686 - 1612924 + | hypothetical protein Cphy_1284 1613051 - 1613686 + | hypothetical protein Cphy_1285 1613797 - 1614369 + | hypothetical protein Cphy_1286 1614415 - 1615575 + | trans-2-enoyl-CoA reductase TERM 1831 1615746 - 1615774 + G 80 -10.4 -3.34398 | gap 1, opp_overlap 1615750, overlap 1615744 1615750 TATGATGTAGTGACA GTAAGCGATGGTG AAGC CGCCATCGC-TAC TCTTTCGAGAGAAGA TERM 1832 1615750 - 1615771 + G 84 -12.3 -2.84325 | opp_overlap 1615750, overlap 1615746 1615744 ATGTAGTGACAGTAA GCGATGGTG AAGC CGCCATCGC TACTCTTTCGAGAGA TERM 1833 1615771 - 1615750 - g 77 -10.1 -3.28119 | opp_overlap 1615746 1615744 1615750 ATGTAGTGACAGTAA GCGATGGTG AAGC CGCCATCGC TACTCTTTCGAGAGA TERM 1834 1616086 - 1616104 + G 86 -10.4 -3.6715 | overlap 1616084 CCTATCAGGCATTTT TTCAAGGA GAA TCCTTGAA TTTAACCTTAAGTGA Cphy_1287 1615659 - 1616342 + | two component transcriptional regulator Cphy_1288 1616339 - 1617916 + | integral membrane sensor signal transduction histidine kinase Cphy_1289 1618232 - 1619131 + | ABC transporter related Cphy_1290 1619112 - 1619900 + | ABC-2 type transporter TERM 1835 1619950 - 1619902 - f 74 -6.9 -4.26003 | opp_overlap 1619909, overlap 1619909 AGAAGATGGAATAAA TTATAAAGAATCCTCCGTAAG ATGAGTA CTTACGAAGGATTCTTTTTTT AGTTTGCGCGTCTTC TERM 1836 1619909 - 1619943 + F 100 -11.6 -5.72207 | opp_overlap 1619902 1619909 GGAATAAATTATAAA GAATCCTCCGTAAG ATGAGTA CTTACGAAGGATTC TTTTTTTAGTTTGCG TERM 1837 1619943 - 1619909 - f 100 -13.8 -4.20981 | opp_overlap 1619909, overlap 1619902 GGAATAAATTATAAA GAATCCTCCGTAAG ATGAGTA CTTACGAAGGATTC TTTTTTTAGTTTGCG Cphy_1291 1620273 - 1620806 + | GCN5-related N-acetyltransferase Cphy_1292 1620790 - 1621257 + | hypothetical protein TERM 1838 1621276 - 1621323 + T 90 -11.6 -3.54459 | gap 1, opp_overlap 1621274 1621272 1621276 1621277, overlap 1621282 1621290 TATTTTTATAACACA GTGAG-AGGAGGAAATTTTCATT AAT GATGAAGATTTCCTCCTTCTCGA TTTAAAACAAATTCC TERM 1839 1621321 - 1621276 - T 81 -10 -3.17622 | gap 1, opp_overlap 1621276 1621282 1621290, overlap 1621274 1621272 1621277 TATTTTTATAACACA GTGAGAGGAGGAAATTTTCAT TAATG ATGAAGATTTCCTCCT-TCTC GATTTAAAACAAATT TERM 1840 1621322 - 1621277 - T 77 -10 -2.50252 | gap 1, opp_overlap 1621276 1621282 1621290, overlap 1621276 1621274 1621272 ATTTTTATAACACAG TGAG-AGGAGGAAATTTTCAT TAATG ATGAAGATTTCCTCCTTCTCG ATTTAAAACAAATTC TERM 1841 1621282 - 1621316 + T 100 -16 -3.47349 | opp_overlap 1621276 1621274 1621277 1621272, overlap 1621276 1621290 TATAACACAGTGAGA GGAGGAAATTTTCATT AAT GATGAAGATTTCCTCC TTCTCGATTTAAAAC Cphy_1293 1622306 - 1621422 - | LysR family transcriptional regulator Cphy_1294 1622469 - 1622972 + | nitroreductase TERM 1842 1623220 - 1623235 + G 100 -11.8 -5.38326 | CTGTAAAAGGTATGG GCGCCC AGAT GGGCGC TTTTTATTTCCTTCA Cphy_1295 1623053 - 1623280 + | hypothetical protein Cphy_1296 1623773 - 1623300 - | pyridoxamine 5'-phosphate oxidase-related FMN-binding TERM 1843 1623576 - 1623592 + g 73 -2.3 -5.33866 | GCATACTTTGGAATT TCGAT TTACATT ATCGA TTTTTTGTCCCTTTG TERM 1844 1623901 - 1623846 - H 100 -12.3 -4.06361 | opp_overlap 1623851 1623863 TGATATACAAGCAAA CATATTATATCATGTAAGTGTACCT GTAAAA AGATACACTTATACGATATATTATG GGGTACACTTATGAT TERM 1845 1623851 - 1623896 + H 74 -8.6 -3.3334 | opp_overlap 1623846, overlap 1623863 TACAAGCAAACATAT TATATCATGTAAGTGTACCT GTAAAA AGATACACTTATACGATATA TTATGGGGTACACTT Cphy_1297 1623912 - 1625354 + | GntR family transcriptional regulator TERM 1846 1625558 - 1625527 - T 100 -9.5 -5.2197 | GATAAAAAGGAAAAA GAGGCGGCTTTGA CTGTTT TTAAAACCGCCTC ATCGACTTAAATTAT Cphy_1299 1626725 - 1625565 - | hypothetical protein Cphy_1300 1626827 - 1627501 + | cyclic nucleotide-binding protein TERM 1847 1627602 - 1627630 + T 100 -17.7 -3.01712 | opp_overlap 1627602 1627606, overlap 1627606 TCTTCGGCCTCAAGA TAAATGACCTAGG AAG CCTAGGTCATTTA TCTTGAGGCCGAAGA TERM 1848 1627630 - 1627602 - T 100 -17.7 -3.01712 | opp_overlap 1627602 1627606, overlap 1627606 TCTTCGGCCTCAAGA TAAATGACCTAGG AAG CCTAGGTCATTTA TCTTGAGGCCGAAGA TERM 1849 1627606 - 1627626 + T 100 -14.1 -4.1891 | opp_overlap 1627602 1627606, overlap 1627602 CGGCCTCAAGATAAA TGACCTAGG AAG CCTAGGTCA TTTATCTTGAGGCCG TERM 1850 1627626 - 1627606 - T 100 -14.1 -4.1891 | opp_overlap 1627606 1627602, overlap 1627602 CGGCCTCAAGATAAA TGACCTAGG AAG CCTAGGTCA TTTATCTTGAGGCCG Cphy_1301 1628696 - 1627659 - | pectinesterase TERM 1851 1628138 - 1628124 - G 70 -2.8 -5.17353 | overlap 1628125 ACAGTGATCAAAAAA TGAAGT TGC ACTTCC AAAGATAAAATCAAC TERM 1852 1628544 - 1628555 + g 77 -3 -5.4433 | GGTTAAGTTAGGCTG CTTA ATGA TAAG TTTTTCTTTGTATGT TERM 1853 1629009 - 1629040 + H 88 -9 -4.27117 | CCAAAAGCGCACCTT TTATCAGAAGTT AAAAATCA AACTTCTGATAA TTTATATTATAGAAA TERM 1854 1630507 - 1630531 + G 71 -5.1 -4.62772 | AAGATGGCGGACATC TCGTGATTAAT TAT ATTAATCGAGA TTTCTTTGATTTCAG Cphy_1302 1629279 - 1630811 + | putative RNA methylase Cphy_1303 1630880 - 1631782 + | endonuclease IV Cphy_1304 1631948 - 1632982 + | hypothetical protein TERM 1855 1633030 - 1632992 - f 83 -10.4 -3.06261 | overlap 1632995 TGGTAAGTGTGAAGA GAATTTCTAAGGCGTTAT AAG ACATCGCCCAAGAAATTC TAAAACTTCACGTCC Cphy_1305 1633167 - 1633946 + | hypothetical protein TERM 1856 1634138 - 1634127 - g 71 -4.4 -4.7878 | TATGGAGAAAACAAA GGTA CAGA TACC AAGTCGCTACGGATA Cphy_1306 1633960 - 1634880 + | hypothetical protein TERM 1857 1635416 - 1635398 - g 90 -10.4 -4.32436 | ACAGTAGCAGGAAAA CTTTCTCT TGT AGAGAAAG CTCAAGCAGTGGGGA Cphy_1307 1634993 - 1635727 + | UBA/THIF-type NAD/FAD binding protein TERM 1858 1635782 - 1635808 + F 91 -9.5 -4.45259 | overlap 1635779 TATAGAAACGATTTT GAAGGAGGG GTTATTTGA CCCTCCTTC TTATTTTTGCACTTT TERM 1859 1636997 - 1636981 - g 83 -5.9 -5.0916 | opp_overlap 1636960, overlap 1636982 TTTTCAAGAGAAAAA CCCATAT TAC ATATGGA GTATAACTAAGAAAA TERM 1860 1639662 - 1639631 - g 72 -8 -3.67611 | gap 1 CTTACTGTAACAGAA GGAG-CGGTACAACC AAC GGTTACACCGACACC TACCCCAACGGGGCA Cphy_1308 1636790 - 1640047 + | APHP domain-containing protein TERM 1861 1640273 - 1640237 - f 80 -8.9 -3.74347 | gap 1, opp_overlap 1640237 CGTATAAATTGGAAA GTGACAAACGG-CATT CATATT AATGTCCGTTTGTCGC TTATTCTTAACAATG TERM 1862 1640237 - 1640273 + F 90 -11.1 -3.95324 | gap 1, opp_overlap 1640237 CGTATAAATTGGAAA GTGACAAACGG-CATT CATATT AATGTCCGTTTGTCGC TTATTCTTAACAATG TERM 1863 1640735 - 1640750 + G 74 -7.6 -3.93262 | opp_overlap 1640734 1640735, overlap 1640729 AGGTGGGAGATTAAT GCTTTC TGAT GAAAGC TTTGAATTTATTGGC Cphy_1309 1640550 - 1641230 + | vitamin B12 dependent methionine synthase activation region TERM 1864 1641215 - 1641241 + T 71 -6.7 -4.04922 | opp_overlap 1641215 TATCTATCGAAAAAA TGACATGGA ATACTAAGC TCCATGTCA TTTATGAATTTATAT TERM 1865 1641241 - 1641215 - T 88 -7.4 -5.09895 | opp_overlap 1641215 TATCTATCGAAAAAA TGACATGGAA TACTAAG CTCCATGTCA TTTATGAATTTATAT Cphy_1310 1642101 - 1641409 - | YhhN family protein TERM 1866 1641815 - 1641805 - G 79 -3.2 -5.52023 | ATGACCAAGAAAAAA GAGA ACT CCTC CAATGTAAGCTTGAA Cphy_1311 1642690 - 1642247 - | hypothetical protein TERM 1867 1642312 - 1642329 + g 75 -9.9 -2.78891 | opp_overlap 1642324 CAGTGATTCCATGCT CCGCTAA TAAA TTAGCGG TAATTCCGTTACCAT TERM 1868 1642547 - 1642561 + g 83 -11.4 -2.98545 | overlap 1642544 AGAAGCTGGTCGAGG GGTGGG AAG CCCACC TAATTGTTCTGGACA TERM 1869 1642805 - 1642778 - H 71 -7.8 -3.47307 | CTAATAGTACTACAA TATCGGAAACTA GGAA CAGGTTCCGATA ATCAGAATGACGGTG Cphy_1312 1643002 - 1643706 + | hypothetical protein TERM 1870 1644271 - 1644261 - g 73 -3.2 -5.24531 | overlap 1644263 ATTCTGGATAAAAAA CTGC ATT ACAG TATTGCTGTGGCATC Cphy_1313 1643820 - 1644518 + | regulatory protein GntR HTH Cphy_1314 1646134 - 1644959 - | transposase IS204/IS1001/IS1096/IS1165 family protein TERM 1871 1646247 - 1646198 - H 85 -8.2 -4.4891 | gap 1, opp_overlap 1646206, overlap 1646205 TTTATTATTATAAAA TAAAAAACGTTGGAGTA-GCGAA TTAAT TTCACATACCCCAACATTTATTA TAGAGCCAATAATTA TERM 1872 1646240 - 1646205 - H 100 -6.3 -5.86976 | gap 1, opp_overlap 1646206, overlap 1646198 TTATAAAATAAAAAA CGTTGGAGTA-GCGAA TTAAT TTCACATACCCCAACA TTTATTATAGAGCCA Cphy_1315 1646353 - 1647141 + | electron transfer flavoprotein alpha/beta-subunit Cphy_1316 1647155 - 1648360 + | electron transfer flavoprotein alpha subunit Cphy_1317 1648378 - 1649763 + | FAD linked oxidase domain-containing protein TERM 1873 1649796 - 1649835 + T 100 -17.4 -3.53224 | opp_overlap 1649803, overlap 1649798 1649803 CCCTTTACACCTTAT TAGAAAAGTCCCATGCTT CTTT AAGCATGGGACTTTCCTG TTTAGGCAGGAGATC TERM 1874 1649798 - 1649833 + T 100 -17.8 -3.34398 | opp_overlap 1649803, overlap 1649796 1649803 CTTTACACCTTATTA GAAAAGTCCCATGCTT CTTT AAGCATGGGACTTTCC TGTTTAGGCAGGAGA TERM 1875 1649828 - 1649803 - T 100 -16.3 -4.46926 | opp_overlap 1649798 1649796 1649803 CACCTTATTAGAAAA GTCCCATGCTT CTTT AAGCATGGGAC TTTCCTGTTTAGGCA TERM 1876 1649803 - 1649828 + T 100 -16.3 -4.00532 | opp_overlap 1649803, overlap 1649798 1649796 CACCTTATTAGAAAA GTCCCATGCTT CTTT AAGCATGGGAC TTTCCTGTTTAGGCA Cphy_1318 1651192 - 1649861 - | MATE efflux family protein TERM 1877 1650479 - 1650489 + g 78 -6.8 -4.70626 | ATTCTGAACCCCAGT TGGG ATG CCCA TTTTTAGGATTCTTG Cphy_1319 1651745 - 1651275 - | hypothetical protein Cphy_1320 1652242 - 1652442 + | small acid-soluble spore protein alpha/beta type TERM 1878 1652508 - 1652555 + F 100 -13.1 -3.98944 | gap 2, opp_overlap 1652517, overlap 1652503 1652517 TAATAGCAGTAATCT CATAAT--AAAGCAGCAACCGGC AAAT GTCGGTTGCTGCTTTCCGTTATG TTATGTTGTTTTGTA TERM 1879 1652544 - 1652517 - f 100 -15.6 -4.33248 | opp_overlap 1652508 1652503 1652517 TAATCTCATAATAAA GCAGCAACCGGC AAAT GTCGGTTGCTGC TTTCCGTTATGTTAT TERM 1880 1652517 - 1652544 + F 100 -17.8 -3.86112 | opp_overlap 1652517, overlap 1652508 1652503 TAATCTCATAATAAA GCAGCAACCGGC AAAT GTCGGTTGCTGC TTTCCGTTATGTTAT Cphy_1321 1652972 - 1653529 + | methyltransferase Cphy_1322 1653563 - 1654054 + | pantetheine-phosphate adenylyltransferase Cphy_1323 1654056 - 1654724 + | hypothetical protein TERM 1881 1654754 - 1654802 + T 82 -7.7 -4.52897 | gap 1, opp_overlap 1654753 1654754 TATTGCGATAAAAAT TCCCATACCATATTAATCTGTG AAATAA TACAGAA-AATATGGAATGGGA TTTATTCTTACTTGT Cphy_1324 1655935 - 1654847 - | nucleoside recognition domain-containing protein TERM 1882 1655878 - 1655845 - G 100 -9.6 -4.73613 | opp_overlap 1655851, overlap 1655851 TTAGTATTAATAAAA GTAAAAGACCGCCC TTTAGT AGGCGGCCTTTTCC AAAGATAGATGAATG TERM 1883 1655872 - 1655851 - G 83 -7.2 -4.78029 | opp_overlap 1655851, overlap 1655845 TTAATAAAAGTAAAA GACCGCCC TTTAGT AGGCGGCC TTTTCCAAAGATAGA Cphy_1325 1657239 - 1655986 - | hypothetical protein Cphy_1326 1657582 - 1658577 + | phosphate acetyltransferase Cphy_1327 1658810 - 1659997 + | acetate kinase TERM 1884 1660167 - 1660181 + F 77 -4.2 -5.40072 | GTGTGAATTTTTGGG CGCTTA CAT TATGCG TTTTTTTAGACAGGA Cphy_1328 1660204 - 1660731 + | hypothetical protein Cphy_1329 1660735 - 1660920 + | ribosomal protein L32 TERM 1885 1660951 - 1660978 + T 100 -11.4 -5.15969 | opp_overlap 1660951 TGTAGTATAATATAA GGATGTTTCAAG AATA CTTGAGGCATCC TTTTTTACATTGCAC TERM 1886 1661010 - 1661068 + T 83 -8.1 -4.18506 | gap 1, opp_overlap 1661021 1661044 CAGCTGGTGAACTTT CTCTGCATCAAG-GTTAAGGCGAGGCTC CATG GAACCTCGCCTAGATACTAGTCGCAGAG TTGTTTTAAAAGTAC Cphy_1330 1662252 - 1661074 - | exonuclease-like protein TERM 1887 1662382 - 1662414 + H 100 -13.5 -3.41053 | opp_overlap 1662385 1662391, overlap 1662372 1662385 TGGTATAATAGGTTA CAAGGAAAAGCACGC TTT GCGAACTTTTCCTTG TTATGAATAATTTAC TERM 1888 1662385 - 1662411 + H 83 -9.4 -3.83226 | opp_overlap 1662385 1662391, overlap 1662382 1662372 TATAATAGGTTACAA GGAAAAGCACGC TTT GCGAACTTTTCC TTGTTATGAATAATT TERM 1889 1662411 - 1662385 - H 90 -11.6 -3.37474 | opp_overlap 1662385 1662382 1662372, overlap 1662391 TATAATAGGTTACAA GGAAAAGCACGC TTT GCGAACTTTTCC TTGTTATGAATAATT Cphy_1331 1662522 - 1664081 + | phospholipase D/transphosphatidylase Cphy_1332 1664100 - 1664351 + | regulatory protein, MerR TERM 1890 1664515 - 1664499 - g 76 -9.5 -3.32684 | overlap 1664497 GGTTAAAGAAAATTA TGTTGTC GTA GACAACA ATGGGATGGGGTATG Cphy_1333 1664452 - 1665063 + | Holliday junction DNA helicase RuvA Cphy_1334 1665084 - 1666094 + | Holliday junction DNA helicase B Cphy_1335 1666260 - 1666673 + | hypothetical protein TERM 1891 1666817 - 1666838 + F 100 -10.9 -4.76087 | TTTGTATGTTACTTA GGCTGTCAA CTCA TTGACGGCC TTTCTTTCTTATATG TERM 1892 1668487 - 1668506 + G 77 -2.8 -5.52909 | GTTTGATAACCTTAC CATATCCT TGGA GGGAAATG TTTTTTTACCTGTTA Cphy_1336 1667018 - 1669471 + | peptidase U32 Cphy_1337 1669623 - 1672541 + | penicillin-binding protein transpeptidase Cphy_1338 1672882 - 1673334 + | NUDIX hydrolase TERM 1893 1673411 - 1673444 + F 100 -10.4 -5.53991 | opp_overlap 1673401 1673411 1673418 AAACAGGCTACGGAA CCAGCAATCGCACA GGAAAG TGTACGATTGTTGG TTTTTTTAATACATG TERM 1894 1673444 - 1673411 - f 83 -10.4 -3.08187 | opp_overlap 1673411, overlap 1673401 1673418 AAACAGGCTACGGAA CCAGCAATCGCACA GGAAAG TGTACGATTGTTGG TTTTTTTAATACATG TERM 1895 1673568 - 1673583 + G 70 -2.6 -5.18561 | gap 1, overlap 1673561 1673558 ATTCCATATCTGTGT CCAGATA CTA TA-CTGG TTTTTTAGATATTTC TERM 1896 1673999 - 1674016 + G 86 -8.5 -4.38712 | ATGATTGATGGCATC GGTTATG AGGA CATAACC TTTTATAAGAATGAC Cphy_1339 1673474 - 1674133 + | hypothetical protein Cphy_1340 1674206 - 1674457 + | hypothetical protein TERM 1897 1674546 - 1674517 - T 100 -13.8 -5.4387 | opp_overlap 1674517 ATATAAATCAAAAAA TGGTGAATAGGT TTAGCT ACCTATTCACCA TTTTAAAAACATTTT TERM 1898 1674517 - 1674546 + T 100 -13.8 -4.10855 | opp_overlap 1674517 ATATAAATCAAAAAA TGGTGAATAGGT TTAGCT ACCTATTCACCA TTTTAAAAACATTTT Cphy_1341 1674841 - 1674560 - | hypothetical protein Cphy_1342 1675200 - 1675709 + | GtrA family protein TERM 1899 1676261 - 1676277 + G 73 -7.3 -4.08394 | opp_overlap 1676261 ATGGAGCGTATCAAA GGTTTTC TTG GAGAACC TTTTGACACGAATGT Cphy_1343 1675739 - 1676941 + | putative RNA methylase TERM 1900 1677005 - 1676951 - T 85 -8.9 -4.02034 | opp_overlap 1676962 1677000 1677004, overlap 1677004 AAATAAAAAATAATA TCTTTGTACAAGACAAGTATGAATC GATAA GATGGATACTTGTCTTTTATAAAGA GGAAAAGGCTAGGAA TERM 1901 1676962 - 1676994 + T 74 -6.4 -4.36914 | opp_overlap 1676951 AATATCTTTGTACAA GACAAGTATGAATC GATAA GATGGATACTTGTC TTTTATAAAGAGGAA TERM 1902 1677000 - 1677045 + T 100 -13.6 -3.47583 | opp_overlap 1676951 1677004 1677012, overlap 1677004 GATACTTGTCTTTTA TAAAGAGGAAAAGGCTAGGA ATCTGC TCCTAGTCTTTCTCTCTTTA TTATACCTTATATTA TERM 1903 1677004 - 1677041 + T 93 -10 -4.36206 | opp_overlap 1676951 1677004 1677012, overlap 1677000 CTTGTCTTTTATAAA GAGGAAAAGGCTAGGA ATCTGC TCCTAGTCTTTCTCTC TTTATTATACCTTAT TERM 1904 1677041 - 1677004 - T 79 -8.5 -3.85698 | opp_overlap 1677004 1677000, overlap 1676951 1677012 CTTGTCTTTTATAAA GAGGAAAAGGCTAGGAA TCTG CTCCTAGTCTTTCTCTC TTTATTATACCTTAT Cphy_1344 1678152 - 1677124 - | hypothetical protein TERM 1905 1677233 - 1677220 - G 78 -6.7 -4.56791 | opp_overlap 1677229 ACGGAAAAAGACAAA GTTGC TAGT GCAAC CGATTTGCTTATAGT TERM 1906 1677873 - 1677898 + g 74 -4.7 -4.72007 | TGTAATTTTCATCTA CGTTGATATAG CGTG CTTTATCATCG TTTATTTTCATAACA TERM 1907 1678126 - 1678136 + g 70 -2.6 -5.20756 | opp_overlap 1678126 AAATATGATAAGAAG TAAT CGT ATTA TTATTTTTTTTTTCA TERM 1908 1678621 - 1678653 + H 87 -9.9 -3.86897 | opp_overlap 1678624 1678629 1678630, overlap 1678624 1678630 TTCTACTATTTATGA CAAGGAAATGTTCGC ATA GCGTACTTTTTCTTG TTTATCCACCATGAA TERM 1909 1678630 - 1678644 + H 84 -5.6 -5.42164 | opp_overlap 1678629 1678624 1678630, overlap 1678624 1678621 TTATGACAAGGAAAT GTTCGC ATA GCGTAC TTTTTCTTGTTTATC Cphy_1345 1678757 - 1679896 + | prephenate dehydratase Cphy_1346 1680034 - 1681560 + | peptidase S1 and S6 chymotrypsin/Hap Cphy_1347 1681633 - 1682625 + | NMT1/THI5-like domain-containing protein TERM 1910 1682643 - 1682661 + F 100 -9.5 -5.5112 | opp_overlap 1682639 1682643 AAGAAAATAAAGGAA GCGCGGG GGTGA CCCGTGC TTTTTTGTTGCTAGG TERM 1911 1682661 - 1682643 - f 72 -7.3 -3.85719 | opp_overlap 1682643, overlap 1682639 AAGAAAATAAAGGAA GCGCGGG GGTGA CCCGTGC TTTTTTGTTGCTAGG TERM 1912 1682911 - 1682931 + F 71 -5.5 -4.55721 | TGGTCACTTCTTAGT GTCTCAT AATGCGA ATGAGAC TTTTGTATGAAATTT Cphy_1349 1683258 - 1683596 + | hypothetical protein TERM 1913 1683780 - 1683745 - T 95 -11.4 -3.93401 | gap 1, opp_overlap 1683745 TCCATAAACGAATAA TCTCCAGAAGAATGTTA CAA TTACATTCT-CTGGAGA TTTTTTAATATACAT TERM 1914 1683745 - 1683780 + T 100 -11.4 -5.22312 | gap 1, opp_overlap 1683745 TCCATAAACGAATAA TCTCCAGAAGAATGTTA CAA TTACATTCT-CTGGAGA TTTTTTAATATACAT TERM 1915 1683840 - 1683818 - T 79 -8.6 -3.9009 | AAGTTAGCTTATAAA CTTTTCTCAT AAA ATAAGAAAAG TTGGAATTTATTAAC Cphy_1350 1684975 - 1683866 - | acyltransferase 3 TERM 1916 1685288 - 1685277 - R 71 -3 -5.14563 | opp_overlap 1685277, overlap 1685284 1685287 TCTGTCATGAAAAAA GATT AGAT AATC GTATTATAATAACCT TERM 1917 1685396 - 1685349 - R 86 -5.8 -5.39755 | opp_overlap 1685349 TATAATGAGAAAAAA CCCCATAAAATTGAATAG CGTAATATTTGT CTAACCAATTCTATGGGG TTTCGTTAATGTAGG TERM 1918 1685442 - 1685415 - R 100 -13 -3.09933 | opp_overlap 1685412, overlap 1685419 CGTTAATGTAGGCAA TTAACTCGTAAA ATAT TTTACGAGTTAA AACGTATACTTTTCT TERM 1919 1685438 - 1685419 - R 80 -9.4 -3.38088 | opp_overlap 1685412, overlap 1685415 AATGTAGGCAATTAA CTCGTAAA ATAT TTTACGAG TTAAAACGTATACTT Cphy_1351 1685871 - 1685464 - | hypothetical protein Cphy_1352 1688442 - 1686019 - | UvrD/REP helicase TERM 1920 1688658 - 1688648 - H 74 -4 -5.18715 | ATAAAAATAAGAAAA TAAG AAA CTTA ACTATAATCTATAGC Cphy_1353 1688857 - 1689495 + | hypothetical protein TERM 1921 1689604 - 1689642 + T 76 -8.5 -3.51442 | gap 1, opp_overlap 1689611, overlap 1689606 1689611 ATCCTTATAAAATTC TAA-AAAAGGTATTCGAA ATAT TCCGAATACCTTTTCTTA TGTTCTATTATTGTG TERM 1922 1689606 - 1689639 + T 77 -8.3 -3.86431 | opp_overlap 1689611, overlap 1689604 1689611 CCTTATAAAATTCTA AAAAAGGTATTCGAA ATAT TCCGAATACCTTTTC TTATGTTCTATTATT TERM 1923 1689634 - 1689611 - T 100 -10.4 -5.15117 | opp_overlap 1689611 1689606 1689604 TAAAATTCTAAAAAA GGTATTCGAA ATAT TCCGAATACC TTTTCTTATGTTCTA TERM 1924 1689611 - 1689634 + T 90 -8.2 -4.92791 | opp_overlap 1689611, overlap 1689606 1689604 TAAAATTCTAAAAAA GGTATTCGAA ATAT TCCGAATACC TTTTCTTATGTTCTA Cphy_1354 1689967 - 1689650 - | TrpR like protein, YerC/YecD TERM 1925 1690108 - 1690077 - H 78 -6 -4.84359 | opp_overlap 1690077 1690079 1690081, overlap 1690079 CTACTTTCATAAAAA TATACGATTCTAAT ATTA AATAGAATCGTATC ATTATAACTTTGTGT TERM 1926 1690079 - 1690106 + H 71 -8.6 -2.88398 | opp_overlap 1690079 1690077, overlap 1690077 1690081 ACTTTCATAAAAATA TACGATTCTAAT ATTA AATAGAATCGTA TCATTATAACTTTGT TERM 1927 1690106 - 1690079 - H 82 -8.6 -4.04397 | opp_overlap 1690077 1690079 1690081, overlap 1690077 ACTTTCATAAAAATA TACGATTCTAAT ATTA AATAGAATCGTA TCATTATAACTTTGT TERM 1928 1690322 - 1690290 - H 100 -14.3 -3.80573 | opp_overlap 1690293 1690299, overlap 1690293 1690299 TTTATCAGGAGTAAA CAAGAAAAAGTACGC TTC GCGAACTTTTCCTTG TCATGAATAAAAGGA TERM 1929 1690293 - 1690319 + H 73 -8 -3.4252 | opp_overlap 1690290 1690293 1690299, overlap 1690299 ATCAGGAGTAAACAA GAAAAAGTACGC TTC GCGAACTTTTCC TTGTCATGAATAAAA TERM 1930 1690319 - 1690293 - H 90 -10.2 -4.03141 | opp_overlap 1690293 1690299, overlap 1690290 1690299 ATCAGGAGTAAACAA GAAAAAGTACGC TTC GCGAACTTTTCC TTGTCATGAATAAAA TERM 1931 1690313 - 1690299 - H 84 -5.6 -5.39905 | opp_overlap 1690299 1690293, overlap 1690293 1690290 AGTAAACAAGAAAAA GTACGC TTC GCGAAC TTTTCCTTGTCATGA Cphy_1355 1690386 - 1691777 + | RNA methyltransferase TERM 1932 1692019 - 1692001 - f 74 -3.2 -5.43621 | AGAAATTAGAAAAAA TGAATTGT AAT AAAATTCA AATTCTTTAGAGCCT TERM 1933 1692388 - 1692370 - g 76 -4.5 -5.09245 | opp_overlap 1692370, overlap 1692371 TGAAAATTATAAAAA TCCATGG AATGG CCTTGGA ATTGTTTATAACTCT Cphy_1356 1692134 - 1694635 + | beta-lactamase domain-containing protein TERM 1934 1694790 - 1694817 + F 100 -10.6 -5.2696 | opp_overlap 1694787 1694790 TTTCATTAGAATTGA GGACGGGAGAGT AAAA ACTTTCACGTCC TTTTTTAAGTTTTGC Cphy_1358 1695458 - 1695589 + | hypothetical protein TERM 1935 1695751 - 1695782 + F 83 -6.6 -4.82901 | opp_overlap 1695753, overlap 1695753 AATATACTAAAAATA AAGGACATGAGAGT GGAA ACTTTCACGTCCTA TTTTTATAGAAAAAG TERM 1936 1695753 - 1695780 + F 85 -9.2 -4.03995 | opp_overlap 1695753, overlap 1695751 TATACTAAAAATAAA GGACATGAGAGT GGAA ACTTTCACGTCC TATTTTTATAGAAAA TERM 1937 1695780 - 1695753 - f 95 -9.2 -4.94262 | opp_overlap 1695751 1695753 TATACTAAAAATAAA GGACATGAGAGT GGAA ACTTTCACGTCC TATTTTTATAGAAAA Cphy_1359 1696110 - 1696454 + | ArsR family transcriptional regulator Cphy_1360 1696515 - 1697222 + | hypothetical protein TERM 1938 1697297 - 1697286 - f 80 -5.8 -4.9448 | opp_overlap 1697286 1697285 1697292, overlap 1697288 ATTCATGAAATAAAA GGTC GTGA GACC GTTCATTTTCAAACT TERM 1939 1697292 - 1697332 + F 100 -21.5 -4.77165 | opp_overlap 1697286 1697288, overlap 1697286 1697285 GAAATAAAAGGTCGT GAGACCGTTCATTTTCAAA CTA TTTGAGAATGAGCGGTCTC TTTTGTTATCGAGAA TERM 1940 1697449 - 1697432 - f 74 -5.7 -4.59069 | opp_overlap 1697432 1697431 1697434 ACTATAAGTATAAAA TATGTAA TAAT TTACATA AGTTTTTCTATAACA Cphy_1361 1697552 - 1698742 + | hypothetical protein TERM 1941 1698890 - 1698846 - T 100 -25.3 -3.61609 | opp_overlap 1698846 1698853, overlap 1698853 CTACCCAAATGATAA CACAAAACCCCGCAATCCTAT AAA AAAGGACTGCGGGGTTTTGTG TTTGTTGATTAGTAT TERM 1942 1698846 - 1698890 + T 100 -23.1 -4.35339 | opp_overlap 1698846 1698853, overlap 1698853 CTACCCAAATGATAA CACAAAACCCCGCAATCCTAT AAA AAAGGACTGCGGGGTTTTGTG TTTGTTGATTAGTAT TERM 1943 1698883 - 1698853 - T 100 -16.2 -4.76193 | opp_overlap 1698846 1698853, overlap 1698846 AATGATAACACAAAA CCCCGCAATCCTAT AAA AAAGGACTGCGGGG TTTTGTGTTTGTTGA TERM 1944 1698853 - 1698883 + T 100 -14 -4.89838 | opp_overlap 1698853 1698846, overlap 1698846 AATGATAACACAAAA CCCCGCAATCCTAT AAA AAAGGACTGCGGGG TTTTGTGTTTGTTGA Cphy_1362 1702356 - 1699084 - | hypothetical protein TERM 1945 1701376 - 1701388 + g 72 -4.1 -4.93877 | ATAAGCGGTAAGGGA GGAGT TAT ATTCC TTTTCTTTAATCGCC Cphy_1363 1703054 - 1702350 - | ABC transporter related Cphy_1364 1703262 - 1703882 + | TetR family transcriptional regulator TERM 1946 1704076 - 1704113 + F 81 -10.2 -3.14881 | opp_overlap 1704073 CGCTAAGAAGGATTA TCGCTCTCATAC-GTTTA AAGC TAAACAGT-TGAGAGCGA TTGGTAGAACGATTG Cphy_1365 1704206 - 1704727 + | deaminase-reductase domain-containing protein Cphy_1366 1706663 - 1704795 - | heavy metal translocating P-type ATPase TERM 1947 1705756 - 1705772 + g 78 -6.5 -4.63218 | ACCATTCCCATACGT TCCAGTG CCT CACCGGA TTTTATTAAGACACC Cphy_1367 1706829 - 1707374 + | TetR family transcriptional regulator TERM 1948 1707561 - 1707581 + F 93 -6.2 -5.52986 | opp_overlap 1707561 GTTTTGGAATTCAAA GATTCTGT CCTAT GCAGAATC TTTTTTTGATGAAAT TERM 1949 1707950 - 1707974 + F 100 -11.6 -6.23545 | overlap 1707907 GCTATCTCCTTTTAC GCCTTTTACA ATTTA TGTAAAAGGC TTTTTTTTGTTTGCA TERM 1950 1708430 - 1708448 + G 89 -10.4 -4.06903 | opp_overlap 1708421, overlap 1708421 1708419 1708440 GAACTACTGTACCGA CAGTGTTT TAG AAACACTG TTTCGTTTCGCCATT Cphy_1368 1708044 - 1709255 + | glutamyl-tRNA reductase TERM 1951 1709597 - 1709611 + G 74 -4.3 -5.04249 | AAATGTAGCTTCGGA TCAGA CAAAA TCTGA TTTCTTTTTTCCAGG TERM 1952 1709702 - 1709687 - g 70 -3.3 -4.94902 | TAAGGATCATAAAAA GGTAA AAGTAA TTACC CAGAAAATAAGAGAT Cphy_1369 1709268 - 1709735 + | siroheme synthase TERM 1953 1710543 - 1710525 - g 73 -7.4 -4.0031 | opp_overlap 1710522, overlap 1710522 ATTTCGATGAAATAA CCGGTGAT TAT ATCACTGG AAATCTTACCGGAAA Cphy_1370 1709741 - 1710628 + | porphobilinogen deaminase TERM 1954 1711265 - 1711246 - g 72 -3.6 -5.02715 | opp_overlap 1711250, overlap 1711239 ACATCAAAGCAAAAA CAAATTGT TGCG ACAATTGG TACGCTAGAACAGGA Cphy_1371 1710625 - 1712133 + | uroporphyrin-III C-methyltransferase Cphy_1372 1712170 - 1713165 + | delta-aminolevulinic acid dehydratase TERM 1955 1713803 - 1713817 + G 82 -6.4 -5.01732 | overlap 1713804 CAATATGGGAGTTGT TCTTCC GAA GGAAGG TTTTTTACACGGATT Cphy_1373 1713165 - 1714448 + | glutamate-1-semialdehyde-2,1-aminomutase Cphy_1374 1714606 - 1715763 + | cobalamin biosynthesis protein CbiD TERM 1956 1716033 - 1716020 - g 73 -2.3 -5.39221 | opp_overlap 1716020 AGAACAAGGAAAAAA TGTGG CATT CCTCA CTTTGGGAGACCCAA TERM 1957 1716121 - 1716131 + G 70 -5.4 -4.40358 | CAGAAATCATAAGCG GGAT TCC ATCC TTTTGTGCGGTAGCT Cphy_1375 1715739 - 1716422 + | precorrin-2 C20-methyltransferase Cphy_1376 1716424 - 1717182 + | precorrin-4 C11-methyltransferase TERM 1958 1718061 - 1718076 + G 72 -7.6 -3.76968 | AATCATGTATCCATT CATTCG GTCG CGAATG TTTCATCCATAGATT Cphy_1377 1717296 - 1718351 + | cobalamin (vitamin B12) biosynthesis CbiG protein TERM 1959 1718575 - 1718560 - g 76 -3.3 -5.30155 | TGAGGAAGCAAAAAA GGAAA AGATAG TTTCC ATGATTTGCAGTGGT TERM 1960 1718985 - 1719005 + G 70 -2.6 -5.16071 | opp_overlap 1718985 AGTTACGTGAAGCTA CAGTTG ATATGTTCA CAACTG TTTTTATTGGTAATT Cphy_1378 1718348 - 1719076 + | precorrin-3B C17-methyltransferase TERM 1961 1720577 - 1720593 + G 70 -8.1 -3.36569 | opp_overlap 1720576, overlap 1720575 CCAATGACGAAGGAG GAAATAC GAA GTATTTC TATTTCAAAGCTTCG Cphy_1379 1719119 - 1721086 + | precorrin-6x reductase Cphy_1380 1721101 - 1722459 + | cobyrinic acid a,c-diamide synthase Cphy_1381 1722496 - 1723020 + | ATP:corrinoid adenosyltransferase BtuR/CobO/CobP Cphy_1382 1723033 - 1723677 + | precorrin-8X methylmutase CbiC/CobH TERM 1962 1724259 - 1724290 + F 100 -7.4 -5.79588 | opp_overlap 1724248, overlap 1724248 AAATTACAGAACAAA GCTGTATTGAGTTC GTTT GAACTTAGTATGGC TTTTTTTAATTTTAG TERM 1963 1725175 - 1725187 + G 84 -7.7 -4.54553 | opp_overlap 1725175 1725174 GTGGAATCAACTAAT TGCAG CAA CTGCA TTTATTATGTTTCTG Cphy_1383 1724327 - 1725226 + | cobalt ABC transporter, inner membrane subunit CbiQ TERM 1964 1725757 - 1725742 - g 71 -9 -3.17941 | opp_overlap 1725741 1725739 1725738, overlap 1725721 ATCATATTTGATGAA CCAACG GCAG CGTTGG ATCCTTTAAATGCAA Cphy_1384 1725247 - 1726098 + | ABC transporter related Cphy_1385 1726169 - 1726921 + | cobalamin biosynthesis protein CbiM Cphy_1386 1726921 - 1727253 + | cobalt transport protein CbiN TERM 1965 1727255 - 1727295 + F 100 -13.5 -4.3467 | opp_overlap 1727255 ATGTAATGAGTTAAA TTCTAAGCCTCATCTAG TCTTATT CTGGATGGGGCTTGGAA TTTTGGTATAGCAGT TERM 1966 1727715 - 1727693 - g 86 -9.2 -4.30448 | opp_overlap 1727693 AAATGGAATTGAAAA TGACATCATG ATT CACGACGTCA ATTTATATAAAGAAG Cphy_1387 1727421 - 1728206 + | anaerobic cobalt chelatase TERM 1967 1728702 - 1728690 - g 78 -6.3 -4.78237 | overlap 1728672 TATTGCAGAACAAAA CTGAA TTC TTCAG CACAGATAACAATAA Cphy_1388 1728440 - 1729198 + | hypothetical protein Cphy_1389 1729257 - 1729592 + | hypothetical protein TERM 1968 1729680 - 1729714 + F 100 -10.9 -5.90981 | CTTGAATCAAACGCC GAGTCTATGTTTTTC TTTTT GAAAAGCGTAGGCTC TTTTTTTTGCTCTGA Cphy_1390 1729845 - 1730771 + | binding-protein-dependent transport systems inner membrane component TERM 1969 1730840 - 1730829 - g 81 -4.4 -5.38321 | AAAGATTATAAAAAA GTTG ATTA CAAC AATAGTTCTCGGTTT Cphy_1391 1730803 - 1731633 + | binding-protein-dependent transport systems inner membrane component Cphy_1392 1731696 - 1733045 + | extracellular solute-binding protein TERM 1970 1733062 - 1733101 + F 100 -11.6 -4.09864 | opp_overlap 1733062, overlap 1733071 AGTATGGTATAATAA TCTCAAACAGGGATGGGC ATTT GCTTATCTCTTTTTGAGA TTTTGCACAATAAGT TERM 1971 1733071 - 1733092 + F 72 -5.1 -4.7416 | opp_overlap 1733062, overlap 1733062 TAATAATCTCAAACA GGGATGGGC ATTT GCTTATCTC TTTTTGAGATTTTGC Cphy_1393 1733168 - 1734928 + | histidine kinase internal region Cphy_1394 1734977 - 1736548 + | two component AraC family transcriptional regulator Cphy_1395 1736693 - 1738969 + | hypothetical protein TERM 1972 1738982 - 1739016 + F 100 -10.9 -5.14563 | opp_overlap 1738981 1738980 TAAAAAACATTAACG GGGCTATGTTTTTCA CACAC TGAAAAGCATAACCC TTTTTTGCTACCGGA TERM 1973 1739057 - 1739093 + F 85 -8.1 -4.65263 | ATAAGAATATTTTTA GAGCGTGTTTTCATCAA GCA TTTTTCAAAACACGCTC TTTATTTTAGCACAT Cphy_1396 1739448 - 1740800 + | sodium:dicarboxylate symporter TERM 1974 1740857 - 1740833 - T 100 -12.2 -5.16151 | opp_overlap 1740833 GAAATTTAATAAAAA CCGCAATCCT ATTTA AGGACTGCGG TTTTTACTTGCTGCT TERM 1975 1740833 - 1740857 + T 100 -10 -4.90869 | opp_overlap 1740833 GAAATTTAATAAAAA CCGCAATCCT ATTTA AGGACTGCGG TTTTTACTTGCTGCT TERM 1976 1740924 - 1740904 - T 91 -10.5 -4.08064 | AATCTGTTGTTAAAA TGGCTTCCA ATT TGAAAGCCA AGATTTATCATTTGC Cphy_1397 1741143 - 1740898 - | hypothetical protein Cphy_1398 1741796 - 1742128 + | hypothetical protein Cphy_1399 1742125 - 1743120 + | dipeptidyl aminopeptidase/acylaminoacyl-peptidase-like protein Cphy_1400 1743270 - 1743755 + | GCN5-related N-acetyltransferase Cphy_1401 1744116 - 1744316 + | hypothetical protein Cphy_1402 1744371 - 1744859 + | 3-demethylubiquinone-9 3-methyltransferase TERM 1977 1744930 - 1744899 - f 100 -13.2 -3.86283 | opp_overlap 1744891 1744899 GGAATTTATAGTAAA GGCAGAACAAAC ATTACTCA GTTTGTTCTGCC TTTCGAGTTTAATGA TERM 1978 1744899 - 1744930 + F 100 -13.2 -3.73107 | opp_overlap 1744899, overlap 1744891 GGAATTTATAGTAAA GGCAGAACAAAC ATTACTCA GTTTGTTCTGCC TTTCGAGTTTAATGA Cphy_1403 1745089 - 1746060 + | glycosyl hydrolase BNR repeat-containing glycosyl hydrolase Cphy_1404 1747128 - 1746592 - | putative flavoredoxin Cphy_1405 1747233 - 1747550 + | HxlR family transcriptional regulator TERM 1979 1747661 - 1747687 + F 85 -8.1 -4.50358 | overlap 1747660 ATAATAAATTATATT TGCACTCATTG CAGTT TAATGGGTGCA TTTTGATATTTAAAT TERM 1980 1748163 - 1748177 + G 79 -5 -5.1167 | CTTATGGTCTTGGTG GAGTAG GAA TTACTC TTTTTATCTTCCCTT Cphy_1406 1747940 - 1748317 + | hypothetical protein Cphy_1407 1748378 - 1748872 + | hypothetical protein Cphy_1408 1748850 - 1749191 + | ABC transporter ATP-binding protein Cphy_1409 1749318 - 1750049 + | methyltransferase type 11 TERM 1981 1750065 - 1750047 - f 77 -4 -5.4833 | overlap 1750063 TCAGCGAAGAAAAAA TAATTTAT ATC ATAAATCA CCATAGGCATCGGAA TERM 1982 1750101 - 1750066 - f 84 -11.2 -3.0558 | opp_overlap 1750066 1750067 1750071, overlap 1750063 1750071 TTATATCATAAATCA CCATAGGCATCGGAAT GAAA AGTCCGATGCCTTTGA TTTTTGTAACTAGGT TERM 1983 1750066 - 1750101 + F 93 -9 -4.88067 | opp_overlap 1750066 1750063 1750071, overlap 1750067 1750071 TTATATCATAAATCA CCATAGGCATCGGAAT GAAA AGTCCGATGCCTTTGA TTTTTGTAACTAGGT TERM 1984 1750067 - 1750100 + F 91 -12.5 -3.52117 | opp_overlap 1750066 1750063 1750071, overlap 1750066 1750071 TATATCATAAATCAC CATAGGCATCGGAAT GAAA AGTCCGATGCCTTTG ATTTTTGTAACTAGG TERM 1985 1750096 - 1750071 - f 88 -11.9 -2.90798 | opp_overlap 1750067 1750066 1750071, overlap 1750066 1750063 TCATAAATCACCATA GGCATCGGAAT GAAA AGTCCGATGCC TTTGATTTTTGTAAC TERM 1986 1750071 - 1750096 + F 100 -11.9 -4.38116 | opp_overlap 1750071 1750066 1750063, overlap 1750067 1750066 TCATAAATCACCATA GGCATCGGAAT GAAA AGTCCGATGCC TTTGATTTTTGTAAC Cphy_1410 1750400 - 1751233 + | MerR family transcriptional regulator TERM 1987 1751296 - 1751284 - f 77 -7.7 -3.99432 | opp_overlap 1751286, overlap 1751279 1751285 1751290 TAAATATAAATATAA GGGAA AGG TTCCC CTGATACAGTGATTT TERM 1988 1751342 - 1751285 - f 100 -12.9 -2.98033 | opp_overlap 1751286 1751322, overlap 1751284 1751279 1751290 AAATATAAATATAAG GGAAAGGTTCCCCTGATACAGTGATTT TATA AGAAAACTGCATCAGAGGAACCTTTCT TTTTTTGCAGTTTCA TERM 1989 1751286 - 1751341 + F 100 -14.2 -5.49809 | opp_overlap 1751284 1751279 1751285 1751290, overlap 1751322 AATATAAATATAAGG GAAAGGTTCCCCTGATACAGTGATTT TATA AGAAAACTGCATCAGAGGAACCTTTC TTTTTTTGCAGTTTC TERM 1990 1751337 - 1751290 - f 95 -11.4 -3.87116 | opp_overlap 1751286 1751322, overlap 1751284 1751279 1751285 TAAATATAAGGGAAA GGTTCCCCTGATACAGTGATTT TATA AGAAAACTGCATCAGAGGAACC TTTCTTTTTTTGCAG TERM 1991 1751882 - 1751849 - g 81 -8.1 -4.25104 | gap 1 GTTGGTGCAGTAAAA GCTGCAACTGATGCGG GAG CAGCAGCAG-CGCAGC GAGTTGGAGAATTGG Cphy_1411 1751684 - 1751974 + | microcompartments protein Cphy_1412 1751974 - 1752990 + | membrane spanning protein Cphy_1413 1752995 - 1753282 + | hypothetical protein TERM 1992 1753511 - 1753489 - g 87 -12 -3.28712 | overlap 1753501 1753502 CGTTCCGCTGTAGAA GCTGGTGCAG AAG CTGCAGCAGC TATCGGTAAGCTGAC Cphy_1414 1753303 - 1753599 + | microcompartments protein Cphy_1415 1753617 - 1753925 + | microcompartments protein Cphy_1416 1753956 - 1755491 + | aldehyde dehydrogenase family protein TERM 1993 1757962 - 1757921 - g 73 -8.9 -3.32268 | opp_overlap 1757926, overlap 1757924 TAACTATCTGGATAA CAATACTCTTATCGATGCT CAGA AGCATCCAGAAAAGTATCG TGACCTTATCGTTCG Cphy_1417 1755519 - 1758065 + | formate C-acetyltransferase Cphy_1418 1758088 - 1759035 + | glycyl-radical activating family protein Cphy_1419 1759053 - 1759394 + | microcompartments protein TERM 1994 1759472 - 1759462 - g 73 -6.8 -4.2528 | GGCCAACTTAATAAA CGGT TTG ACCG GCCCGACAAGAAGAA Cphy_1420 1759391 - 1759822 + | EutP/PduV family GTP-binding protein Cphy_1421 1759845 - 1760981 + | iron-containing alcohol dehydrogenase Cphy_1422 1760981 - 1761616 + | hypothetical protein Cphy_1423 1761598 - 1762443 + | ethanolamine utilization protein EutJ family protein Cphy_1424 1762457 - 1762762 + | microcompartments protein Cphy_1425 1762756 - 1763019 + | ethanolamine utilization protein EutN/carboxysome structural protein Ccml Cphy_1426 1763035 - 1763664 + | ethanolamine utilisation EutQ family protein Cphy_1427 1763676 - 1764362 + | microcompartments protein Cphy_1428 1764393 - 1765940 + | acetaldehyde dehydrogenase (acetylating) Cphy_1429 1765969 - 1766604 + | propanediol utilization protein Cphy_1430 1766648 - 1766932 + | microcompartments protein TERM 1995 1767022 - 1767038 + T 72 -3.6 -5.1287 | opp_overlap 1767022, overlap 1767023 TGAGTAATCAATCTA TGGAGC AAAAG GCTCCC TTTTTTGACTATAAG TERM 1996 1767023 - 1767037 + T 70 -7.1 -3.66999 | opp_overlap 1767022, overlap 1767022 GAGTAATCAATCTAT GGAGC AAAAG GCTCC CTTTTTTGACTATAA Cphy_1431 1767364 - 1767122 - | hypothetical protein Cphy_1432 1767590 - 1768153 + | isoprenylcysteine carboxyl methyltransferase TERM 1997 1768198 - 1768188 - f 75 -8.2 -3.67112 | AGTATATCCGAATAA CGCC CAT GGCG AAGAAAAATACCTAA Cphy_1433 1768578 - 1769135 + | HAD superfamily hydrolase Cphy_1434 1769381 - 1769956 + | hypothetical protein TERM 1998 1770011 - 1770042 + F 83 -10.3 -3.10493 | gap 1 TTTAATAGTTATTTG TGGGCAAG-ACCAT CTTAA GTGGTTCTTGCCCA TGTGTATATTACAAA TERM 1999 1770190 - 1770204 + F 87 -8.6 -4.18018 | CCAAATTTTAATCTG GTAGGA TAT TCCTAC TTTTACCTAAAAACA TERM 2000 1770385 - 1770425 + F 82 -8.5 -4.12599 | opp_overlap 1770390, overlap 1770390 ACAATAACTCTCTTT AATAATCACATAAACAACT TAG AGATGTTTATGTGATTAAA TTTTAGGAGGTTATT TERM 2001 1770420 - 1770390 - f 100 -12.8 -3.61894 | opp_overlap 1770385 1770390 AACTCTCTTTAATAA TCACATAAACAACT TAG AGATGTTTATGTGA TTAAATTTTAGGAGG TERM 2002 1770390 - 1770420 + F 100 -12.8 -3.36823 | opp_overlap 1770390, overlap 1770385 AACTCTCTTTAATAA TCACATAAACAACT TAG AGATGTTTATGTGA TTAAATTTTAGGAGG TERM 2003 1770479 - 1770461 - g 100 -13.2 -3.57797 | GGCAAATGGAGACAA TGCCAGTG TAA CACTGGCA AAGATTCGCGCGGGT Cphy_1435 1770444 - 1771535 + | peptidoglycan binding domain-containing protein Cphy_1436 1772750 - 1771908 - | hypothetical protein TERM 2004 1772823 - 1772839 + H 82 -10.9 -2.78495 | GATGCTTCCGTAACT TTGCTGC TAT GCAGCAA TCATGTTCGTAGTAC TERM 2005 1773950 - 1773992 + H 100 -16.6 -3.2534 | overlap 1773945 1773954 GTCGGGATTAGTGCT TTGAGTATGAGGTAGTTGAA ATA TTCCGCTACCTCATACTTAA TTAAATTATGATAGT TERM 2006 1773954 - 1773988 + H 100 -15.2 -3.41978 | overlap 1773950 1773945 GGATTAGTGCTTTGA GTATGAGGTAGTTGAA ATA TTCCGCTACCTCATAC TTAATTAAATTATGA TERM 2007 1775152 - 1775142 - g 72 -4 -4.96773 | TCAAGCAAAAACAAA TTTG TTA CAAA TAAAGATGTAGATGA Cphy_1437 1775076 - 1775894 + | hypothetical protein TERM 2008 1775904 - 1775948 + T 100 -11.5 -5.18561 | opp_overlap 1775918 AATTGATATAACAAG GGGGTGTTGCAAAATGACTAA ATT TTAGTCATGGAGCAACGCTCC TTTTTTGGCTCTTTG TERM 2009 1775934 - 1775918 - T 79 -8.1 -4.07568 | opp_overlap 1775904 GGGGGTGTTGCAAAA TGACTAA ATT TTAGTCA TGGAGCAACGCTCCT TERM 2010 1775966 - 1776006 + T 85 -8.3 -4.62904 | overlap 1775968 1775972 TTTTGGCTCTTTGTC AAGTGTTGGGGTGGGATTT ACG GAATCCCGCTCCATTACTG TTTTTAGAGATATTT TERM 2011 1775968 - 1776004 + T 90 -10.9 -3.91908 | overlap 1775966 1775972 TTGGCTCTTTGTCAA GTGTTGGGGTGGGATTT ACG GAATCCCGCTCCATTAC TGTTTTTAGAGATAT TERM 2012 1775972 - 1776000 + T 95 -12.5 -3.60925 | overlap 1775968 1775966 CTCTTTGTCAAGTGT TGGGGTGGGATTT ACG GAATCCCGCTCCA TTACTGTTTTTAGAG Cphy_1438 1777269 - 1776094 - | transposase IS204/IS1001/IS1096/IS1165 family protein TERM 2013 1776278 - 1776291 + g 78 -6.7 -4.69464 | opp_overlap 1776278 1776277, overlap 1776288 GCGCAGTTCTCAAAT TCAGG TATT CCTGA TTTTTCAGCTGTTTT TERM 2014 1777391 - 1777351 - R 87 -5.6 -5.67063 | gap 1, opp_overlap 1777354, overlap 1777354 TTTATTACAAAAAAA GAAGGTTGGGAATGTGT TAAGTGAT ACACAC-CCCAACCTTT ATTATAGAACCCCTT TERM 2015 1777388 - 1777354 - R 86 -7.3 -4.9041 | gap 1, opp_overlap 1777354, overlap 1777351 ATTACAAAAAAAGAA GGTTGGGAATGTGT TAAGTGAT ACACAC-CCCAACC TTTATTATAGAACCC Cphy_1439 1779119 - 1777512 - | transposase IS4 family protein TERM 2016 1777554 - 1777564 + g 73 -5.4 -4.67011 | overlap 1777541 CTGATGGCCAAGTCG TCCA TTT TGGA TTTTTGCATGCAGTT TERM 2017 1779160 - 1779135 - R 72 -8.9 -2.70708 | opp_overlap 1779133 1779138, overlap 1779132 AATTTAATTATACCA CTAGCGGGTGC TTTA GCACCCGCTTT TTACATTTTAAATCA TERM 2018 1779138 - 1779157 + r 100 -15 -4.87318 | opp_overlap 1779135 1779132, overlap 1779133 TTAATTATACCACTA GCGGGTGC TTTA GCACCCGC TTTTTACATTTTAAA TERM 2019 1779231 - 1779181 - R 100 -11.2 -5.37593 | opp_overlap 1779181 1779196 1779199 TTTTAAATCAAAAAA GGAGCCGTTGCTCCATAACTGATT AAT ACTCAGTTATTTTGCAACAGCCCC TTGTTATATAAATTA Cphy_1440 1780071 - 1779244 - | peptidoglycan binding domain-containing protein Cphy_1441 1780507 - 1780962 + | hypothetical protein TERM 2020 1781016 - 1781047 + F 95 -10.3 -4.58395 | gap 1 TTTAATAGTTATTTA TGGGCAAG-ACCAT CTTAA GTGGTTCTTGCCCA TTTTTGGACCATCCA TERM 2021 1782051 - 1782064 + G 75 -9.5 -3.16492 | opp_overlap 1782048, overlap 1782049 ATTCATACTGAAGGT CGGCG TTAT CGCCG TCTTGCTGAATCTAA Cphy_1443 1781737 - 1782627 + | ABC transporter, permease protein, putative TERM 2022 1782889 - 1782875 - g 73 -2.1 -5.25893 | overlap 1782876 1782885 AGATATAGTAAAAAA CCAAC AAACG GTTGA ACTTCTCAACATAAA Cphy_1444 1782627 - 1784963 + | hypothetical protein TERM 2023 1785024 - 1785012 - g 74 -4.9 -4.79075 | AAAAACTGAATAAAA TCTAT ACA ATAGA CAGCGATAATATCCA Cphy_1445 1784975 - 1785742 + | ABC transporter related TERM 2024 1785797 - 1785839 + T 74 -7.3 -4.10466 | gap 1, opp_overlap 1785797, overlap 1785800 GGTAGAAATAATAAA TAACTCACATCTGATATGAT ATAG AT-AAATCAGATGGGAGTTA TTGTTATTAATTTTT TERM 2025 1785839 - 1785797 - T 80 -7.3 -4.63048 | gap 1, opp_overlap 1785797 1785800 GGTAGAAATAATAAA TAACTCACATCTGATATGAT ATAG AT-AAATCAGATGGGAGTTA TTGTTATTAATTTTT Cphy_1446 1787213 - 1785864 - | transcriptional regulator TERM 2026 1787934 - 1787920 - g 78 -8.6 -3.67498 | TAAGTTTTAACACAA TATCCG TTG CGGATA ACATGATTAGGGGAA Cphy_1447 1787325 - 1788239 + | hypothetical protein TERM 2027 1788283 - 1788314 + F 90 -11 -3.83226 | gap 1, opp_overlap 1788278, overlap 1788277 1788284 ACAGGAACATTTGCT GGGGCAAGT-CCATT TAT AATGGTACTTGCCCA TTCTTGTAGCTAATT TERM 2028 1788284 - 1788313 + F 100 -14.5 -2.89212 | gap 1, opp_overlap 1788278, overlap 1788277 1788283 CAGGAACATTTGCTG GGGCAAGT-CCATT TAT AATGGTACTTGCCC ATTCTTGTAGCTAAT TERM 2029 1788374 - 1788364 - f 70 -4 -4.94058 | opp_overlap 1788364 TCAATTCAAACAAAA GTTT AGT AAAC ATTATTTTATTAAAA Cphy_1448 1788560 - 1789609 + | phosphonate ABC transporter, periplasmic phosphonate-binding protein TERM 2030 1789654 - 1789685 + F 76 -9.6 -3.03412 | gap 1, opp_overlap 1789654, overlap 1789653 ATAACTTAGAAGAAA TCAGGGATGAGAGTG TAC TAC-CTTATCCCTGA ATTTATGTGGAGTTA TERM 2031 1789685 - 1789654 - f 78 -6.7 -4.36206 | gap 1, opp_overlap 1789654 1789653 ATAACTTAGAAGAAA TCAGGGATGAGAGT GTACT AC-CTTATCCCTGA ATTTATGTGGAGTTA TERM 2032 1790197 - 1790211 + G 75 -8.6 -3.5594 | opp_overlap 1790204, overlap 1790204 GTTATCGGGTGGACA GCAACA GCG TGTTGC TTTAGCACGTACGTT Cphy_1449 1789748 - 1790512 + | phosphonate ABC transporter, ATPase subunit TERM 2033 1790580 - 1790569 - g 70 -3 -5.09426 | GCTAACGGTAAAAAA GTAT TAGA ATAC CGCAGCAGAACGCCA Cphy_1450 1790509 - 1791330 + | phosphonate ABC transporter, inner membrane subunit Cphy_1451 1791345 - 1792154 + | phosphonate ABC transporter, inner membrane subunit TERM 2034 1792177 - 1792222 + F 100 -11.5 -4.18018 | opp_overlap 1792183 1792184, overlap 1792180 1792183 ACATCCCAACTATTT GAGGAATCTAAAATAAAATTC AGAA GGAATTTATTTTAGGTTCTTC TTTTCAATAAAGGGA TERM 2035 1792180 - 1792219 + F 90 -9.6 -4.21812 | opp_overlap 1792183 1792184, overlap 1792177 1792183 TCCCAACTATTTGAG GAATCTAAAATAAAATTC AGAA GGAATTTATTTTAGGTTC TTCTTTTCAATAAAG TERM 2036 1792263 - 1792238 - f 87 -12.1 -2.75825 | opp_overlap 1792234, overlap 1792235 1792234 TTTTCAATAAAGGGA GTGTGAAAAAT CAAG ATTTTTCACAC ACGAATTTGTGCTGT Cphy_1452 1792326 - 1793861 + | 5'-nucleotidase domain-containing protein TERM 2037 1793848 - 1793837 - f 74 -2.2 -5.626 | opp_overlap 1793846 CATCTTACAAAAAAA CGGA GAAT TCCA TGTGAAATGGTAATT Cphy_1453 1793961 - 1794647 + | glycerophosphoryl diester phosphodiesterase Cphy_1454 1794648 - 1795652 + | LacI family transcription regulator Cphy_1455 1795903 - 1797531 + | hypothetical protein TERM 2038 1797654 - 1797617 - T 100 -18.8 -4.19624 | opp_overlap 1797617, overlap 1797625 TAGCTTGAACATAAA TATATAAAGCCGCAGT TAAAGT ACTGCGGCTTTATATA TTTTAATTGTTTTAT TERM 2039 1797617 - 1797654 + T 100 -18.8 -4.68479 | opp_overlap 1797617 1797625 TAGCTTGAACATAAA TATATAAAGCCGCAGT TAAAGT ACTGCGGCTTTATATA TTTTAATTGTTTTAT TERM 2040 1797646 - 1797625 - T 100 -11.6 -4.3207 | opp_overlap 1797617, overlap 1797617 ACATAAATATATAAA GCCGCAGT TAAAGT ACTGCGGC TTTATATATTTTAAT Cphy_1456 1798364 - 1797744 - | hypothetical protein Cphy_1457 1799430 - 1798453 - | beta-lactamase TERM 2041 1798791 - 1798818 + g 76 -7.8 -4.11404 | TTATTGTTGTTAAGT TCTCTTCCCATT TAGA AATGCGAGGAGA TTTATATCCTATGGC TERM 2042 1799480 - 1799468 - R 73 -7.7 -3.60627 | TTATTTTATTCTAAA CCTTG CCC CAAGG ATAAAGTCAATATAT Cphy_1458 1800042 - 1799557 - | MerR family transcriptional regulator TERM 2043 1800567 - 1800538 - R 100 -15.2 -5.34309 | opp_overlap 1800538 AGCAGTAAACAAAAA GCGATACCGATT TTGAAG AATCGGTATCGC TTATCATAATAACTT TERM 2044 1800538 - 1800567 + r 100 -15.9 -3.44794 | opp_overlap 1800538 AGCAGTAAACAAAAA GCGATACCGATTT TGAA GAATCGGTATCGC TTATCATAATAACTT Cphy_1459 1801462 - 1800584 - | L-serine dehydratase, iron-sulfur-dependent, alpha subunit Cphy_1460 1802140 - 1801472 - | L-serine dehydratase, iron-sulfur-dependent, beta subunit Cphy_1461 1803382 - 1802168 - | sodium:dicarboxylate symporter TERM 2045 1803758 - 1803782 + H 100 -12.9 -5.5112 | CCTTTCATCATTATT GCGGGACAGGT GTG ACTTGTCTCGC TTTTTTATTCATGAC TERM 2046 1803843 - 1803897 + H 93 -9.5 -4.55128 | gap 1, overlap 1803856 TGTTTTGATTTCTTA TACCCGCA-AGGAGCATTCTGCACTT TTAC AGGTGTGGTATGTTTTTTTGCGGGTA TTTTGCTTTCGGAAT TERM 2047 1803856 - 1803883 + H 76 -3.4 -5.42862 | overlap 1803843 TATACCCGCAAGGAG CATTCTGCACTT TTAC AGGTGTGGTATG TTTTTTTGCGGGTAT Cphy_1462 1804148 - 1804426 + | hypothetical protein Cphy_1463 1804648 - 1805961 + | GTPase EngC TERM 2048 1806093 - 1806059 - f 100 -13.1 -4.06864 | opp_overlap 1806061, overlap 1806061 TGTATATAATAAGAA GATCCCTTACTTTTC GTTTA GAAAAGTAAGGGATT TTGTATGTTTAGGAT TERM 2049 1806091 - 1806061 - f 100 -15.7 -3.61971 | opp_overlap 1806061, overlap 1806059 TATATAATAAGAAGA TCCCTTACTTTTC GTTTA GAAAAGTAAGGGA TTTTGTATGTTTAGG TERM 2050 1806061 - 1806091 + F 100 -15.7 -4.74013 | opp_overlap 1806061 1806059 TATATAATAAGAAGA TCCCTTACTTTTC GTTTA GAAAAGTAAGGGA TTTTGTATGTTTAGG TERM 2051 1806339 - 1806371 + F 73 -7.7 -3.70811 | opp_overlap 1806348, overlap 1806342 TTAATTTATTTAGGA CAGGGAAAAGCTCGC GAA GCGTACTTTTTCTTG TTTACAGTTATATAA Cphy_1464 1806408 - 1806950 + | carbonic anhydrase Cphy_1465 1807159 - 1808109 + | D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding TERM 2052 1808187 - 1808138 - f 100 -9.6 -5.18355 | gap 1, opp_overlap 1808138 TTTAAAAATTAAAAA CCATGAAAAGTTACAAAGGT-GA GTATA TCGACCTTAATAACATTTCATGG TTTTTTCTATAATGT TERM 2053 1808138 - 1808187 + F 100 -7.4 -5.40625 | gap 1, opp_overlap 1808138 TTTAAAAATTAAAAA CCATGAAAAGTTACAAAGGT-GA GTATA TCGACCTTAATAACATTTCATGG TTTTTTCTATAATGT Cphy_1466 1808433 - 1809905 + | integral membrane sensor signal transduction histidine kinase Cphy_1467 1809907 - 1810596 + | two component transcriptional regulator TERM 2054 1810668 - 1810708 + F 85 -5 -5.55769 | gap 2 ATAGGTGTAGTTTAA TCTGCTTGTTTATACTGG CTCTGTA CCAG-A-AAGCAAGCAGA TTTTTTATTATGAGA TERM 2055 1811217 - 1811196 - g 86 -4.3 -5.60993 | opp_overlap 1811199 GCTTCGAGAAAAAAA GAACGTGCC GGTA GGCGAGTTC TCACGCGGAATGAAG Cphy_1468 1810822 - 1811781 + | ABC transporter related TERM 2056 1812195 - 1812210 + G 73 -6.8 -4.24002 | CTGATTACATTTGGT GCGGGA GGGA TCCTGC TTTTGGCCTTTACCG TERM 2057 1812371 - 1812381 + G 73 -6.8 -4.3255 | GTTTTTTATTCAGAT CGAC CCT GTCG TTTGTTGCTTAAAAA Cphy_1469 1811778 - 1812542 + | ABC-2 type transporter Cphy_1470 1812539 - 1813093 + | hypothetical protein Cphy_1471 1813126 - 1814313 + | hypothetical protein TERM 2058 1814446 - 1814398 - T 75 -4.9 -4.97461 | gap 2 AACAAATACGAAAAA CCATGAAATG-TGCAAAGG-TGA GTATA CCAGCCTTTAAAACATTTCATGG TTTTTCTATTATGTA Cphy_1472 1815366 - 1814482 - | AraC family transcriptional regulator TERM 2059 1816050 - 1816062 + G 73 -6.3 -4.3953 | opp_overlap 1816050 1816048 GATATTTTCAGAAGA TTCCT CCA AGGAA TTTATTATGGTTGGA TERM 2060 1816584 - 1816615 + G 73 -7.4 -4.07568 | gap 1, opp_overlap 1816598, overlap 1816588 TGACAATTACAGTTG GATACCGAAAGGGAC GAA GTATCTTTCGG-ATC TTTTAAAAGAGAAGA TERM 2061 1816588 - 1816612 + G 73 -9.3 -2.78032 | opp_overlap 1816598, overlap 1816584 AATTACAGTTGGATA CCGAAAGGGAC GAA GTATCTTTCGG ATCTTTTAAAAGAGA Cphy_1473 1815592 - 1816737 + | putative esterase TERM 2062 1816807 - 1816787 - f 90 -8.3 -4.75472 | opp_overlap 1816787 TTTATAGCAAGAAAA CACTTCTGA TTC TCAGAGGTG TTTCTTTTATTTCTG TERM 2063 1816787 - 1816807 + F 100 -10.5 -5.00611 | opp_overlap 1816787 TTTATAGCAAGAAAA CACTTCTGA TTC TCAGAGGTG TTTCTTTTATTTCTG TERM 2064 1817413 - 1817400 - g 75 -5.3 -4.85545 | ATTAAATGAAGAAAA TGTCT ATCA AGACA AAATTGTTATCTAGT TERM 2065 1818651 - 1818663 + G 74 -7.7 -3.90744 | GATTTGCGGTGGTAG CGGAT GAA ATCCG TTCTTTGGCAGAAAA Cphy_1474 1817390 - 1819093 + | methyl-accepting chemotaxis sensory transducer TERM 2066 1819253 - 1819205 - T 95 -9 -5.0916 | gap 1, opp_overlap 1819204 1819206, overlap 1819206 CTTTTAAGACAAAAA GGAGCATGCGCTCCATAGATTGA CTAT TCAA-CTATGGAGCATAAGCTCT TTTTAAACATCTATC TERM 2067 1819206 - 1819252 + T 100 -12.5 -4.61633 | gap 1, opp_overlap 1819205 1819206, overlap 1819204 TTTTAAGACAAAAAG GAGCATGCGCTCCATAGATTGA CTAT TCAA-CTATGGAGCATAAGCTC TTTTTAAACATCTAT TERM 2068 1819252 - 1819206 - T 95 -12.5 -3.64773 | gap 1, opp_overlap 1819204 1819206, overlap 1819205 TTTTAAGACAAAAAG GAGCATGCGCTCCATAGATTGA CTAT TCAA-CTATGGAGCATAAGCTC TTTTTAAACATCTAT Cphy_1475 1820217 - 1819291 - | C4-dicarboxylate transporter/malic acid transport protein Cphy_1476 1820706 - 1820233 - | C_GCAxxG_C_C family protein TERM 2069 1820906 - 1820934 + H 85 -10.6 -3.44146 | TCTTTATACTGATGA TTCATTTATAGA AAAAA TCTATAAATGAA TTGATTATGAGGAGA Cphy_1477 1821004 - 1821903 + | LysR family transcriptional regulator Cphy_1478 1822057 - 1823082 + | molybdopterin binding domain-containing protein Cphy_1479 1823097 - 1823588 + | molybdenum cofactor biosynthesis protein C Cphy_1480 1823691 - 1824689 + | molybdenum cofactor biosynthesis protein A Cphy_1481 1824695 - 1825627 + | molybdenum cofactor synthesis domain-containing protein Cphy_1482 1825678 - 1826556 + | molybdenum ABC transporter, periplasmic molybdate-binding protein TERM 2070 1826583 - 1826554 - f 87 -10.3 -3.65351 | gap 1, opp_overlap 1826564, overlap 1826556 1826564 GGATTTTTAGCTAAA TAGTGTAAAAGAAC GGT GTTCTTTTACAC-A GAAGTTTGTGCTAGC TERM 2071 1826582 - 1826556 - f 100 -15.4 -3.40775 | opp_overlap 1826564, overlap 1826554 1826564 ATTTTTAGCTAAATA GTGTAAAAGAAC GGT GTTCTTTTACAC AGAAGTTTGTGCTAG Cphy_1483 1826681 - 1827346 + | molybdate ABC transporter, inner membrane subunit TERM 2072 1827389 - 1827359 - f 86 -11.3 -2.57881 | opp_overlap 1827360, overlap 1827358 TAATGGCCTTAGAAT TCTGGTTGAAAAG TTAAT CTTTTCAACCAGT TGTTATACATTCCAA TERM 2073 1827360 - 1827388 + F 100 -14.8 -3.84808 | opp_overlap 1827359 1827358 AATGGCCTTAGAATT CTGGTTGAAAAG TTAAT CTTTTCAACCAG TTGTTATACATTCCA Cphy_1484 1827451 - 1828626 + | ABC transporter related Cphy_1485 1828657 - 1829781 + | hypothetical protein Cphy_1486 1829925 - 1830947 + | selenide, water dikinase Cphy_1487 1831098 - 1831769 + | SirA family protein Cphy_1488 1831953 - 1832798 + | hypothetical protein TERM 2074 1832804 - 1832789 - f 76 -3.3 -5.38958 | overlap 1832783 ACGTAGAAAGAAAAA CCTTT CATAAT AAAGG AGAAATGTAATGATA TERM 2075 1833236 - 1833218 - g 91 -6 -5.4588 | opp_overlap 1833220, overlap 1833221 1833223 GAAAAGTATAAAAAA GAATACCA AGA TGGTAATC TGTGGGCACAGCTCT TERM 2076 1833233 - 1833221 - g 78 -6.3 -4.75967 | opp_overlap 1833220, overlap 1833218 1833223 AAGTATAAAAAAGAA TACCA AGA TGGTA ATCTGTGGGCACAGC Cphy_1489 1832814 - 1833953 + | cysteine desulfurase family protein Cphy_1490 1833964 - 1834200 + | hypothetical protein Cphy_1491 1834253 - 1834996 + | hypothetical protein TERM 2077 1835552 - 1835570 + G 74 -8.2 -3.74928 | ACTACAATTAGTGTT TACGGTGA GCA TCATCGTA TTATTGGATTAGTCT Cphy_1492 1835240 - 1835905 + | YheO domain-containing protein TERM 2078 1835944 - 1835961 + F 100 -9.9 -5.3104 | opp_overlap 1835944 AGAAAATGCATTTAA GGAAGTC GGAA GACTTCC TTTTATTTTTGATAC TERM 2079 1835961 - 1835944 - f 81 -9.9 -3.13591 | opp_overlap 1835944 AGAAAATGCATTTAA GGAAGTC GGAA GACTTCC TTTTATTTTTGATAC TERM 2080 1836071 - 1836095 + F 83 -4.4 -5.58454 | TAGTAATAATAAAAA GAAATAGATT TATAT AGTCTGTTTC TTTTTTTGATGTCCA Cphy_1493 1836361 - 1836735 + | endoribonuclease L-PSP TERM 2081 1837049 - 1837036 - f 73 -8.1 -3.51825 | CCATCTGAATTATAA GGTGC TATA GCACC AGAATTGAGGTTGCG TERM 2082 1837098 - 1837082 - g 77 -8.1 -3.93782 | GTATTTAATAGGAAA TGGTAAA TTA TTTACCA GAGACGCCAAAAATC Cphy_1494 1837065 - 1838402 + | putative chlorohydrolase/aminohydrolase Cphy_1495 1838455 - 1840137 + | hypothetical protein TERM 2083 1840255 - 1840281 + F 73 -4.6 -5.03715 | gap 1, overlap 1840222 1840221 AATTTCTTTCAACCT GGAA-TTTGTG CTGGTA CACAAAGTTCC TTTTTTAAAGCTACT TERM 2084 1841002 - 1840968 - g 100 -10.9 -5.27476 | gap 1, overlap 1840972 GTTAACAAAAGAAAA GAT-AGCAGCTGGTGA GACT TCACCAGGTGCTCATC CTGCATCAAGACCGG TERM 2085 1840997 - 1840972 - g 93 -11.9 -3.67607 | overlap 1840968 ACAAAAGAAAAGATA GCAGCTGGTGA GACT TCACCAGGTGC TCATCCTGCATCAAG Cphy_1496 1840384 - 1841757 + | dihydropyrimidinase TERM 2086 1841761 - 1841799 + F 72 -9 -2.64803 | opp_overlap 1841761, overlap 1841765 1841789 AAGAGAGTGTGAAAA GATATTCTAAGTCTGC AAAGTAC GCCGACTAAGAATATC TAAGTTTCACACTGC TERM 2087 1841799 - 1841761 - f 86 -9.7 -4.1413 | opp_overlap 1841761 1841765 1841789 AAGAGAGTGTGAAAA GATATTCTAAGTCTGCA AAGTA CGCCGACTAAGAATATC TAAGTTTCACACTGC TERM 2088 1842474 - 1842464 - g 81 -5.4 -5.20333 | GACGCAGAAGAAAAA GTAC TTG GTAC TGGTGAATATGTAGA TERM 2089 1842656 - 1842639 - g 71 -4.9 -4.63218 | gap 1 TTCCTTTTAACAAAA CAGG-ACA TAT TGTACCTG ATTGGGATGTATTAA Cphy_1497 1841927 - 1844488 + | selenium-dependent molybdenum hydroxylase 1 Cphy_1498 1844555 - 1845838 + | xanthine/uracil/vitamin C permease TERM 2090 1845857 - 1845889 + F 87 -11.3 -3.0371 | opp_overlap 1845856 TTACTTTGAAAGTAG GTACCATGGTGTCAC AAA GTGGCACCATGGAAA TATGTATACTAATCT TERM 2091 1846072 - 1846060 - f 83 -6.9 -4.90869 | AGCACTAATTAAAAA GGCGC TAA ACGCC AGAATTGAGGTTAGG TERM 2092 1846153 - 1846143 - g 72 -4 -5.03201 | opp_overlap 1846143, overlap 1846136 AATAATAATGAAAAA TCAA ATA TTGA TTTTTTAAACTTCGA TERM 2093 1846143 - 1846153 + G 74 -4 -5.09426 | opp_overlap 1846143 1846136 AATAATAATGAAAAA TCAA ATA TTGA TTTTTTAAACTTCGA Cphy_1499 1846092 - 1847312 + | diaminopropionate ammonia-lyase Cphy_1500 1847407 - 1848591 + | peptidase TERM 2094 1848642 - 1848674 + F 100 -17.9 -4.56597 | opp_overlap 1848642 1848651, overlap 1848651 GATACTTTATTAAAA CAAGGAAAAGTTCGC GAA GCGTACTTTTCCTTG TTTTTAAACCAGAGA TERM 2095 1848674 - 1848642 - f 100 -17.9 -4.27617 | opp_overlap 1848642 1848651, overlap 1848651 GATACTTTATTAAAA CAAGGAAAAGTTCGC GAA GCGTACTTTTCCTTG TTTTTAAACCAGAGA TERM 2096 1848651 - 1848665 + F 71 -5.6 -4.70739 | opp_overlap 1848651 1848642, overlap 1848642 TTAAAACAAGGAAAA GTTCGC GAA GCGTAC TTTTCCTTGTTTTTA TERM 2097 1848665 - 1848651 - f 71 -5.6 -4.67123 | opp_overlap 1848642 1848651, overlap 1848642 TTAAAACAAGGAAAA GTTCGC GAA GCGTAC TTTTCCTTGTTTTTA TERM 2098 1848746 - 1848783 + F 82 -8.8 -4.04764 | gap 1, opp_overlap 1848750 1848751, overlap 1848749 1848752 AAAGAATATTTGGAT GAAAT-GTCACAATGAA GAATG TTCATTGTGATGATTTC TTTCTAACTTCTTTT TERM 2099 1848752 - 1848776 + F 82 -10.2 -3.22499 | opp_overlap 1848751 1848750, overlap 1848749 1848746 TATTTGGATGAAATG TCACAATGAA GAATG TTCATTGTGA TGATTTCTTTCTAAC Cphy_1501 1848945 - 1850408 + | N-acyl-D-glutamate deacylase TERM 2100 1850567 - 1850539 - T 83 -6.9 -4.9181 | gap 1, opp_overlap 1850539 ATATAATATTAAAAA CCGCTATAAAGA GTAATT TC-TTATAGCGG TTTTTGTGTCCATAG TERM 2101 1850539 - 1850567 + T 89 -7.6 -4.99035 | gap 1, opp_overlap 1850539 ATATAATATTAAAAA CCGCTATAAAGAG TAAT TTCTT-ATAGCGG TTTTTGTGTCCATAG Cphy_1502 1851185 - 1850685 - | peptide methionine sulfoxide reductase TERM 2102 1851500 - 1851529 + r 95 -5.7 -5.74288 | gap 1, opp_overlap 1851499 1851497 1851502, overlap 1851502 ATTATGAATAAAGAC TACCGTCATGAGGT AAT ACCCC-TGACGGCA TTTTTTGTTATTTAT TERM 2103 1851527 - 1851502 - R 81 -10.5 -2.95632 | gap 1, opp_overlap 1851502 1851500, overlap 1851499 1851497 TATGAATAAAGACTA CCGTCATGAGGT AAT ACCCC-TGACGG CATTTTTTGTTATTT Cphy_1503 1852435 - 1851557 - | thioredoxin-disulfide reductase TERM 2104 1852228 - 1852195 - G 73 -6.1 -4.4768 | gap 1, overlap 1852197 1852198 1852204 GATCAATATAAGAAA GACCGAGAACTTCATC TGA GATGAAGTTCACA-CC AAGTCTTTTTGCTCC TERM 2105 1852227 - 1852197 - G 74 -7.6 -3.83144 | overlap 1852195 1852198 1852204 TCAATATAAGAAAGA CCGAGAACTTCATC TGA GATGAAGTTCACAC CAAGTCTTTTTGCTC TERM 2106 1852226 - 1852198 - G 79 -11.1 -2.88802 | overlap 1852197 1852195 1852204 CAATATAAGAAAGAC CGAGAACTTCATC TGA GATGAAGTTCACA CCAAGTCTTTTTGCT TERM 2107 1852220 - 1852204 - G 78 -9.5 -3.46874 | overlap 1852198 1852197 1852195 AAGAAAGACCGAGAA CTTCATC TGA GATGAAG TTCACACCAAGTCTT TERM 2108 1852530 - 1852506 - H 85 -10.9 -3.24925 | AGGTTACATGAGTAA TTTTCTGTGAC TGA ATCACAGAAAA AAGAGTCAAAAATCT Cphy_1504 1852676 - 1853956 + | hypothetical protein Cphy_1505 1853953 - 1854306 + | hypothetical protein Cphy_1506 1854463 - 1855635 + | NUDIX hydrolase Cphy_1507 1855688 - 1856224 + | hypothetical protein TERM 2109 1856247 - 1856230 - f 71 -8.5 -2.84401 | overlap 1856225 TAAATCATAAGACGA GTATCTG ATAT CAGATAC GAATCGGAAAATGTA TERM 2110 1856284 - 1856312 + F 82 -4.8 -5.5074 | gap 1, opp_overlap 1856284 TAAGAAAAATAGAAA GTAAGTAT-AAGT GAAA ACTTTGTACTTAC TTTTTTGTTGAGTTA Cphy_1508 1856701 - 1857324 + | hypothetical protein Cphy_1509 1857328 - 1857891 + | hemerythrin HHE cation binding domain-containing protein TERM 2111 1858034 - 1857988 - f 90 -10.9 -3.94811 | AACAGTACTTATAAA GCGTTGCTGGACTTGCGCCAA TAACG TAGACACAAGTCTAGCAATGC CTATAGAAAAGTATA TERM 2112 1858677 - 1858647 - g 71 -9.3 -2.50195 | gap 1, opp_overlap 1858646 1858651, overlap 1858646 1858644 1858651 ATGGATCAGGAACAT TTAATTTCACTGGT CAAT ACC-GTGAAATTAA GTTCAATCTTCCGGA Cphy_1510 1858460 - 1860022 + | endo-1,4-beta-xylanase Cphy_1511 1860368 - 1860739 + | hypothetical protein Cphy_1512 1860777 - 1861352 + | rhomboid family protein Cphy_1513 1861516 - 1862085 + | TetR family transcriptional regulator TERM 2113 1862216 - 1862244 + F 71 -7.5 -3.39138 | opp_overlap 1862212 1862211 1862225 ATAAAAGAAGTCCCA TTTAGCAGAGCAT TTT ATGCCCTACTAAA TTAATATCATTTTTC TERM 2114 1862314 - 1862346 + F 100 -9.2 -5.60689 | overlap 1862315 ATAATTGTATCTAGA TGGAAGTTGTCATC AGTAA GTTGACAGCTTCCG TTTTTTATTGTGTCC TERM 2115 1862315 - 1862345 + F 89 -10.5 -3.94787 | overlap 1862314 TAATTGTATCTAGAT GGAAGTTGTCATC AGTAA GTTGACAGCTTCC GTTTTTTATTGTGTC TERM 2116 1862512 - 1862464 - f 74 -8.5 -3.19967 | opp_overlap 1862472, overlap 1862472 1862478 GTAAAAAAAATACTA TGACAAAATTAAAACAATTTGTT TTA AACATATTGATTTAATTTTAACA ATGATATATAATCCA TERM 2117 1862490 - 1862472 - f 82 -7.6 -4.50583 | opp_overlap 1862472, overlap 1862464 1862478 AATACTATGACAAAA TTAAAACA ATT TGTTTTAA ACATATTGATTTAAT TERM 2118 1862498 - 1862478 - f 74 -5.5 -4.74012 | opp_overlap 1862472, overlap 1862472 1862464 ATGACAAAATTAAAA CAATTTGTT TTA AACATATTG ATTTAATTTTAACAA Cphy_1514 1862596 - 1864533 + | NADH:flavin oxidoreductase/NADH oxidase TERM 2119 1864545 - 1864587 + T 71 -9.2 -2.54325 | opp_overlap 1864548, overlap 1864544 1864554 ATAATTTTTAGAAAG AAAGGCAAACTGATATTCCA TAA TGGAAATTCAGTTTGCCTAA ATCTATTTAAGAAAG TERM 2120 1864584 - 1864548 - T 100 -15.3 -4.55697 | opp_overlap 1864545 1864544 1864554 ATTTTTAGAAAGAAA GGCAAACTGATATTCCA TAA TGGAAATTCAGTTTGCC TAAATCTATTTAAGA Cphy_1515 1864956 - 1864660 - | hypothetical protein Cphy_1516 1865404 - 1866213 + | molybdopterin dehydrogenase FAD-binding Cphy_1517 1866203 - 1866673 + | 2Fe-2S iron-sulfur cluster binding domain-containing protein TERM 2121 1867036 - 1867021 - g 73 -3.2 -5.07275 | GGAGAGACAGAAAAA GCGGTT GATA AAGCGC TAAAACTAATTAAAG TERM 2122 1868461 - 1868441 - g 70 -8.3 -3.37018 | opp_overlap 1868441 AAGAAATCACATTAA TGGACATTG CAA CAAAGTCCA TGTGTGGTAATACAG Cphy_1518 1866673 - 1868967 + | aldehyde oxidase and xanthine dehydrogenase molybdopterin binding TERM 2123 1868979 - 1869000 + G 86 -10.1 -4.12188 | opp_overlap 1868978, overlap 1868980 1868982 CTAGACTTATATTAC TGGCGGCTG GAAA CAGCCGTCG TTTTGGAAGTAATAA TERM 2124 1868980 - 1868999 + G 83 -11.4 -3.06991 | opp_overlap 1868978, overlap 1868979 1868982 TAGACTTATATTACT GGCGGCTG GAAA CAGCCGTC GTTTTGGAAGTAATA TERM 2125 1868982 - 1868997 + G 78 -10.4 -3.09004 | opp_overlap 1868978, overlap 1868980 1868979 GACTTATATTACTGG CGGCTG GAAA CAGCCG TCGTTTTGGAAGTAA TERM 2126 1869384 - 1869401 + G 72 -4.1 -5.0133 | overlap 1869387 TTACCTGGGAAGGGG TTCCTGG CAAT CCAGTAA TTTTTTCAAAGCATC Cphy_1519 1868957 - 1869568 + | hypothetical protein Cphy_1520 1869750 - 1871774 + | methyl-accepting chemotaxis sensory transducer Cphy_1521 1871977 - 1872732 + | glucosamine-6-phosphate deaminase TERM 2127 1872844 - 1872884 + T 72 -8.5 -3.05844 | opp_overlap 1872841 1872855 1872879, overlap 1872847 1872855 TACTGTTGAAAATTA GTGATATTTAAGCAGAG CTTACCA CTCTGCTTAAATAATGC TATTAGAATAACCCA Cphy_1522 1873198 - 1872887 - | hypothetical protein Cphy_1523 1874320 - 1873259 - | hypothetical protein TERM 2128 1874436 - 1874480 + H 100 -13.7 -3.06265 | opp_overlap 1874436 1874439, overlap 1874431 1874439 AAAAAATTAAAGAAA GGAGCATCGCAAAATAGCAAT TTC ATAGCTATTAAGCGATGCTTC TCTAGTTTATAAGGT TERM 2129 1874480 - 1874436 - H 100 -11.5 -4.73341 | opp_overlap 1874436 1874431 1874439, overlap 1874439 AAAAAATTAAAGAAA GGAGCATCGCAAAATAGCAAT TTC ATAGCTATTAAGCGATGCTTC TCTAGTTTATAAGGT TERM 2130 1874477 - 1874439 - H 89 -11.8 -3.23149 | opp_overlap 1874439 1874436 1874431, overlap 1874436 AAATTAAAGAAAGGA GCATCGCAAAATAGCAAT TTC ATAGCTATTAAGCGATGC TTCTCTAGTTTATAA TERM 2131 1874439 - 1874477 + H 95 -11.8 -3.66897 | opp_overlap 1874436 1874439, overlap 1874436 1874431 AAATTAAAGAAAGGA GCATCGCAAAATAGCAAT TTC ATAGCTATTAAGCGATGC TTCTCTAGTTTATAA TERM 2132 1874520 - 1874506 - H 86 -10 -3.66921 | opp_overlap 1874496 AAGGTGAATGTTAAA GGATGC GCC GCATCC CCTAAACCTTCTTTT Cphy_1524 1874838 - 1875101 + | hypothetical protein TERM 2133 1875295 - 1875283 - f 72 -4.9 -4.90321 | opp_overlap 1875283 AAAAACAAGATAAAA GATTA AAG TAATC TTGTGGGGTAGAATA Cphy_1525 1875401 - 1875937 + | hypothetical protein Cphy_1526 1875994 - 1876290 + | GCN5-related N-acetyltransferase Cphy_1527 1876583 - 1877041 + | GCN5-related N-acetyltransferase TERM 2134 1877230 - 1877194 - T 100 -13.9 -3.47307 | opp_overlap 1877194, overlap 1877197 TTAATAGCATTAGAA GAATCACCAGCAAAGTA CTG TTCTTTGTTGGTGATTC TTTTTATACATAATA TERM 2135 1877194 - 1877230 + T 100 -16.1 -4.88736 | opp_overlap 1877194 1877197 TTAATAGCATTAGAA GAATCACCAGCAAAGTA CTG TTCTTTGTTGGTGATTC TTTTTATACATAATA TERM 2136 1877227 - 1877197 - T 83 -9.8 -3.86266 | opp_overlap 1877194, overlap 1877194 ATAGCATTAGAAGAA TCACCAGCAAAGTA CTG TTCTTTGTTGGTGA TTCTTTTTATACATA Cphy_1528 1878218 - 1877364 - | AraC family transcriptional regulator Cphy_1529 1878477 - 1879796 + | extracellular solute-binding protein TERM 2137 1879809 - 1879838 + F 100 -14.3 -3.14881 | TAAGATAATGGGAAG GCTGGGCTGTCGC GCTA GTGACAGCCCAAC TTGGTAAAAAAATTA TERM 2138 1880313 - 1880325 + G 74 -7.7 -3.95584 | CTATCTTATTTTGGA GTGGA AGG TCCAC TTTGGTTAATGGACA Cphy_1530 1879890 - 1880777 + | binding-protein-dependent transport systems inner membrane component Cphy_1531 1880788 - 1881615 + | binding-protein-dependent transport systems inner membrane component Cphy_1532 1881755 - 1882096 + | hypothetical protein TERM 2139 1882120 - 1882175 + F 100 -9.5 -4.80737 | gap 1 TATGTTCGGATAGAG GAATAGTAT-TTTTTTCTGTAAGGAG ATAAA CTTCTTATGGAAAAAACATACCATTC TTCTTTTTTGTATTA Cphy_1533 1882261 - 1882824 + | NADH oxidase TERM 2140 1883086 - 1883097 + F 70 -4.4 -4.74285 | GACATGTACTTGATT TACG TTTA CGTA TTTTGTATTATCGAT Cphy_1534 1883171 - 1884274 + | endonuclease/exonuclease/phosphatase TERM 2141 1884545 - 1884559 + F 72 -7.2 -3.9074 | GAACCGTATTAGATT TTGCTA TGA TAGCAA TCTTTTATGGTTCTT Cphy_1535 1884626 - 1886500 + | arginyl-tRNA synthetase TERM 2142 1887131 - 1887144 + G 73 -3.1 -5.18355 | GCAATGCAAAAGAGT GGAGT AATG ATTCC TTTTTACTTTTTAGA Cphy_1536 1886669 - 1887664 + | NUDIX hydrolase Cphy_1537 1887677 - 1888474 + | xylose isomerase domain-containing protein Cphy_1538 1888747 - 1889829 + | glycine cleavage system T protein Cphy_1539 1889855 - 1890238 + | glycine cleavage system H protein Cphy_1540 1890252 - 1891571 + | glycine dehydrogenase (decarboxylating) Cphy_1541 1891576 - 1893036 + | glycine dehydrogenase subunit 2 TERM 2143 1893109 - 1893121 + G 70 -5.5 -4.48299 | opp_overlap 1893109 ATTAGAGACAGTAGA GCAGG ATA CTTGC TTTCTTTACCTCTGG TERM 2144 1893510 - 1893478 - g 80 -11.5 -2.53012 | opp_overlap 1893477 1893476, overlap 1893477 AACCCTACTAGTAAG TGCAGATATGCAGAA GCT TTCTAAATATCTGCA GGTTTCAAAGGATAA Cphy_1542 1893020 - 1894018 + | lipoyltransferase and lipoate-protein ligase TERM 2145 1894519 - 1894500 - g 100 -9.4 -4.83615 | overlap 1894505 GATGTCCTATAAAAA TGAGACTT CTGA AAGTCTCA GACTTGGAGTAGAAC Cphy_1543 1894237 - 1895649 + | dihydrolipoamide dehydrogenase TERM 2146 1895667 - 1895685 + F 70 -7.4 -3.5774 | opp_overlap 1895667 AATTTAACCTCATAA GCGGATTT CGA ATATCCGC TTTGACAAATTAGAT TERM 2147 1895911 - 1895950 + F 72 -5.9 -4.44667 | gap 1, opp_overlap 1895913 1895916, overlap 1895913 TTAATGAGATTTATA AATAATCCTCTAATCACC TAAAT GG-GAATAGAGGATTATA TTTGTTATTAGAAAA TERM 2148 1895948 - 1895913 - f 82 -8.5 -3.96188 | gap 1, opp_overlap 1895911 1895913, overlap 1895916 AATGAGATTTATAAA TAATCCTCTAATCACC TAAAT GG-GAATAGAGGATTA TATTTGTTATTAGAA TERM 2149 1895913 - 1895948 + F 79 -8.5 -3.82963 | gap 1, opp_overlap 1895913 1895916, overlap 1895911 AATGAGATTTATAAA TAATCCTCTAATCACC TAAAT GG-GAATAGAGGATTA TATTTGTTATTAGAA TERM 2150 1896686 - 1896706 + G 71 -7 -3.85698 | TTTGCTTATTGTGGA TCATGAAA CATTC TTTCATGA TTTATGGACACGAGA Cphy_1544 1896045 - 1897952 + | helicase c2 Cphy_1545 1898031 - 1898312 + | hypothetical protein TERM 2151 1898496 - 1898471 - T 82 -7.5 -4.58466 | opp_overlap 1898473 1898476, overlap 1898472 1898473 1898476 TGTATAAGCACAAAA CGGAAGGAGGG GAAA CCCTCCTTCTT AGTACGCGACAATAA TERM 2152 1898495 - 1898472 - T 85 -11 -3.34357 | opp_overlap 1898473 1898476, overlap 1898471 1898473 1898476 GTATAAGCACAAAAC GGAAGGAGGG GAAA CCCTCCTTCT TAGTACGCGACAATA TERM 2153 1898473 - 1898494 + T 100 -14.5 -3.14211 | opp_overlap 1898472 1898471 1898473 1898476, overlap 1898476 TATAAGCACAAAACG GAAGGAGGG GAAA CCCTCCTTC TTAGTACGCGACAAT TERM 2154 1898494 - 1898473 - T 100 -14.5 -2.59891 | opp_overlap 1898473 1898476, overlap 1898472 1898471 1898476 TATAAGCACAAAACG GAAGGAGGG GAAA CCCTCCTTC TTAGTACGCGACAAT TERM 2155 1898476 - 1898491 + T 87 -10.4 -3.71848 | opp_overlap 1898473 1898472 1898471 1898476, overlap 1898473 AAGCACAAAACGGAA GGAGGG GAAA CCCTCC TTCTTAGTACGCGAC TERM 2156 1898491 - 1898476 - T 85 -10.4 -3.43261 | opp_overlap 1898476 1898473, overlap 1898473 1898472 1898471 AAGCACAAAACGGAA GGAGGG GAAA CCCTCC TTCTTAGTACGCGAC Cphy_1546 1899421 - 1898594 - | AraC family transcriptional regulator TERM 2157 1899359 - 1899370 + g 71 -4.4 -4.74706 | TATGTAACCACAAGC GATG ATTC CATC TTTTTCAGTATTACC TERM 2158 1899479 - 1899467 - H 72 -2.7 -5.37865 | overlap 1899459 TGAATAACGAAAAAA TTTCG TAC CAAAA TGGACATCCTTTGTA TERM 2159 1900432 - 1900447 + G 72 -4 -4.98522 | AACCAGCTGGTGCGC TATGGC ATTT GCTATA TTTTTATGTGAGATT TERM 2160 1900468 - 1900483 + G 76 -7.6 -4.15788 | opp_overlap 1900467 1900468 ATGTGAGATTAAGAG TCTTCG TTTA CGAAGA TTTATTCAAACCATT Cphy_1547 1899632 - 1901068 + | binding-protein-dependent transport systems inner membrane component Cphy_1548 1901146 - 1902138 + | binding-protein-dependent transport systems inner membrane component TERM 2161 1902147 - 1902171 + F 90 -12.3 -3.00923 | AGGATAAGAGTTGCT TTCTCACGTCA TCA TGATGTGAGAA TATATGATGTTAACA Cphy_1549 1902250 - 1904037 + | hypothetical protein TERM 2162 1904050 - 1904078 + F 100 -11.8 -4.07568 | opp_overlap 1904050 1904049, overlap 1904049 TAAAAGATAAAAATT GTAGCTGCTGCA TTTAC TGTGGCAGCTAC TTTTCGAAGGGAGAA Cphy_1550 1904098 - 1904709 + | hypothetical protein Cphy_1551 1904727 - 1905401 + | HAD family hydrolase TERM 2163 1905468 - 1905445 - T 90 -8.9 -4.68705 | opp_overlap 1905445 ATAATGGCAACAAAA GAAGACCCC GAGTTT GAGGTCTTC TTTTTAGGGATAAAA TERM 2164 1905445 - 1905468 + T 80 -7.4 -4.59773 | opp_overlap 1905445 ATAATGGCAACAAAA GAAGACCCCG AGTT TGAGGTCTTC TTTTTAGGGATAAAA Cphy_1552 1905943 - 1905605 - | cupin 2 domain-containing protein Cphy_1553 1906143 - 1905958 - | 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein Cphy_1554 1906256 - 1907188 + | XRE family transcriptional regulator TERM 2165 1907259 - 1907274 + F 74 -7.6 -3.81287 | opp_overlap 1907250 AAATTAGTACCATTT TGGAAC AATT GTTCCA TTTAATGATCCTATA TERM 2166 1907524 - 1907570 + F 88 -6.1 -5.47399 | opp_overlap 1907523 CATTTTGTTATAACT CCTTTCTATGATTTATGTT TGATATTAT ACCATAAATCACAGAAGGG TTTTTTTAAGCTTAA TERM 2167 1911947 - 1911935 - g 73 -6.3 -4.40358 | overlap 1911937 AGTGAGTGCAGAAAA TCCAA GCC TTGGA CTTGAAGGTGCAGAG Cphy_1555 1907640 - 1913306 + | cell wall anchor domain-containing protein TERM 2168 1913445 - 1913394 - f 74 -6.3 -4.43397 | gap 2, opp_overlap 1913406 1913409, overlap 1913402 TGCTAAAAGAAATAA TGGTAAAAGGAATAATGGAATGG AGCAATGA CTATTCCATTATTCC-TT-ACCA GAAATGATAAAAAAC TERM 2169 1913439 - 1913402 - f 93 -10.1 -4.2573 | opp_overlap 1913406 1913409, overlap 1913394 GAAATAATGGTAAAA GGAATAATGGAATGG AGCAATGA CTATTCCATTATTCC TTACCAGAAATGATA Cphy_1556 1913686 - 1914504 + | transglutaminase domain-containing protein Cphy_1557 1915326 - 1914670 - | hypothetical protein Cphy_1558 1916203 - 1915316 - | DegV family protein TERM 2170 1915408 - 1915431 + g 80 -6.2 -5.05782 | gap 1 CATAATTTATTTCTA CATTTCC-AAT TAA ATTAGGAAATG TTTTTTGAACTAAAT Cphy_1559 1916737 - 1917444 + | hypothetical protein Cphy_1560 1917456 - 1918169 + | hypothetical protein TERM 2171 1918226 - 1918284 + T 100 -7.3 -5.49569 | gap 3, opp_overlap 1918226 CACAGTTATTAAAAA GAACATAC-GGGTAGGATTTTGGAATGT GAGTTA ACATTCTGAAAT--TACCCTGTATGTTC TTTTTTGTCTTAATA Cphy_1561 1918998 - 1918294 - | regulatory protein GntR HTH Cphy_1562 1919275 - 1920270 + | hypothetical protein TERM 2172 1920338 - 1920298 - f 100 -14.1 -3.66058 | opp_overlap 1920305, overlap 1920301 ATAGGAGATAGAGAA TTAGCAAGCTTGTGTTTGC GCT GCAACCACAAGCTTGCTCT ACATAAAAAGCAGCG TERM 2173 1920335 - 1920301 - f 100 -20.2 -2.93455 | opp_overlap 1920305, overlap 1920298 GGAGATAGAGAATTA GCAAGCTTGTGTTTGC GCT GCAACCACAAGCTTGC TCTACATAAAAAGCA TERM 2174 1920305 - 1920331 + F 100 -13.8 -3.2794 | opp_overlap 1920301 1920298 ATAGAGAATTAGCAA GCTTGTGTTTGC GCT GCAACCACAAGC TTGCTCTACATAAAA Cphy_1563 1920371 - 1921045 + | hydrogenase accessory protein HypB Cphy_1564 1921125 - 1923800 + | 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein Cphy_1565 1923808 - 1924149 + | hydrogenase expression/synthesis HypA TERM 2175 1924391 - 1924359 - T 71 -7.7 -3.50588 | opp_overlap 1924360 1924363, overlap 1924357 1924363 ATGTTATATTAAAGA TTAAGGTCAGCACTT TTC ATGTGCTGACCTTGT TGTTATATAAACATT TERM 2176 1924360 - 1924390 + T 100 -13.4 -3.885 | opp_overlap 1924359 1924357 1924363, overlap 1924363 TGTTATATTAAAGAT TAAGGTCAGCACTT TTC ATGTGCTGACCTTG TTGTTATATAAACAT TERM 2177 1924363 - 1924387 + T 100 -12.9 -4.06864 | opp_overlap 1924363 1924359 1924357, overlap 1924360 TATATTAAAGATTAA GGTCAGCACTT TTC ATGTGCTGACC TTGTTGTTATATAAA TERM 2178 1924387 - 1924363 - T 100 -12.9 -3.4934 | opp_overlap 1924360 1924363, overlap 1924359 1924357 TATATTAAAGATTAA GGTCAGCACTT TTC ATGTGCTGACC TTGTTGTTATATAAA Cphy_1566 1926922 - 1924529 - | ATPase, P-type (transporting), HAD superfamily, subfamily IC TERM 2179 1924876 - 1924862 - G 70 -3.5 -5.06451 | CATCACGGCAAAAAA GATGG TCACG CCACC GGGAAGGGCTTTGTA TERM 2180 1926130 - 1926152 + g 74 -8.4 -3.72363 | overlap 1926125 CCGTCCGTTTTGTCG CCTCGACGAC ATT GTTATCGAGG TTTGAAATTTGGCTA TERM 2181 1926880 - 1926893 + g 75 -5.3 -4.86773 | opp_overlap 1926874 1926873 CGTCATAATGCTTGT GTTTC AAGC GAAAC TTTTTGATAGTTTTG TERM 2182 1927283 - 1927256 - R 100 -14.3 -4.4078 | opp_overlap 1927254 GTGTGGCAATTAAAA GAGCGAAAGCA GTAGAA TGCTTTCGCTC ACTACTATAAACAGT Cphy_1567 1928687 - 1927344 - | hypothetical protein Cphy_1568 1928946 - 1929713 + | hypothetical protein Cphy_1569 1929694 - 1930146 + | alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen TERM 2183 1930259 - 1930223 - T 100 -12.5 -5.40464 | opp_overlap 1930223 1930224, overlap 1930224 TATGAGAAATAAAAA CGCCACAAGGAAATC AGATAAG AATTTCCTTGTGGCA TTTTTCACTACCTTT TERM 2184 1930223 - 1930259 + T 93 -9.6 -4.69027 | opp_overlap 1930223 1930224, overlap 1930224 TATGAGAAATAAAAA CGCCACAAGGAAAT CAGATAAGA ATTTCCTTGTGGCA TTTTTCACTACCTTT TERM 2185 1930258 - 1930224 - T 100 -13.8 -3.82652 | opp_overlap 1930224 1930223, overlap 1930223 ATGAGAAATAAAAAC GCCACAAGGAAATC AGATAAG AATTTCCTTGTGGC ATTTTTCACTACCTT TERM 2186 1930224 - 1930258 + T 100 -13.1 -3.40331 | opp_overlap 1930223 1930224, overlap 1930223 ATGAGAAATAAAAAC GCCACAAGGAAAT CAGATAAGA ATTTCCTTGTGGC ATTTTTCACTACCTT Cphy_1570 1930871 - 1930359 - | Ferritin Dps family protein Cphy_1571 1931101 - 1932780 + | peptidase S8 and S53 subtilisin kexin sedolisin TERM 2187 1933419 - 1933431 + G 75 -9.1 -3.55814 | opp_overlap 1933413 GAGCAATGATTTCGC TGGCG CAG CGCCA TTATCTGAATTAGTG Cphy_1572 1932859 - 1934538 + | peptidase S8 and S53 subtilisin kexin sedolisin TERM 2188 1934599 - 1934574 - f 83 -10.5 -3.03903 | opp_overlap 1934565, overlap 1934565 1934564 1934578 1934596 1934597 AAAACCTCGTTAATA CGAATTTGTGC TGTC GCCCAAATTCG CAGGACTGCGACAGA Cphy_1573 1934628 - 1936307 + | peptidase S8 and S53 subtilisin kexin sedolisin TERM 2189 1937899 - 1937912 + G 74 -4.5 -5.0538 | CTATGATACGTTAAC CGGAG GTAT TTCCG TTTTTTCCAGTAAAG Cphy_1574 1936556 - 1938238 + | peptidase S8 and S53 subtilisin kexin sedolisin TERM 2190 1940009 - 1940021 + G 81 -4.1 -5.54894 | overlap 1940010 GGGGGTATGGTAAAG TCAAC TTA GTTGG TTTTTTTGATAAGTT Cphy_1575 1938361 - 1940046 + | peptidase S8 and S53 subtilisin kexin sedolisin Cphy_1576 1940148 - 1941827 + | peptidase S8 and S53 subtilisin kexin sedolisin TERM 2191 1942121 - 1942107 - g 77 -2.8 -5.45802 | overlap 1942109 GTGCCAAAAGAAAAA TGCGAT CGC ATCGAA AATGCTGCACATTCC Cphy_1577 1941975 - 1942256 + | hypothetical protein Cphy_1578 1942457 - 1943335 + | ROK family protein TERM 2192 1943442 - 1943487 + F 79 -5.1 -5.16132 | gap 1, opp_overlap 1943442 TTAAAAAGAATGGAA TAAAAAAAGTTTTCATTTGGGT AAA ATCATAATG-AAACTTTTTTTA TTTTCTTTTGGTCTA Cphy_1579 1943545 - 1944048 + | ECF subfamily RNA polymerase sigma-24 factor Cphy_1580 1944041 - 1944952 + | hypothetical protein TERM 2193 1945104 - 1945049 - f 100 -13.6 -3.37198 | opp_overlap 1945052 1945058, overlap 1945052 1945058 GGTCTATATATAATA GAGTTAAAAGGCAGTAAGCAAAGT TATAAGGT ACTTTGCTTGCTGCCTTTTTATTC ATGACAAGGAAAAGT TERM 2194 1945052 - 1945101 + F 100 -16.1 -3.14132 | opp_overlap 1945049 1945052 1945058, overlap 1945058 CTATATATAATAGAG TTAAAAGGCAGTAAGCAAAGT TATAAGGT ACTTTGCTTGCTGCCTTTTTA TTCATGACAAGGAAA TERM 2195 1945101 - 1945052 - f 100 -13.9 -2.54707 | opp_overlap 1945052 1945058, overlap 1945049 1945058 CTATATATAATAGAG TTAAAAGGCAGTAAGCAAAGT TATAAGGT ACTTTGCTTGCTGCCTTTTTA TTCATGACAAGGAAA TERM 2196 1945095 - 1945058 - f 100 -12.9 -4.28977 | opp_overlap 1945052 1945058, overlap 1945052 1945049 ATAATAGAGTTAAAA GGCAGTAAGCAAAGT TATAAGGT ACTTTGCTTGCTGCC TTTTTATTCATGACA TERM 2197 1945058 - 1945095 + F 100 -15.1 -5.1356 | opp_overlap 1945058 1945052 1945049, overlap 1945052 ATAATAGAGTTAAAA GGCAGTAAGCAAAGT TATAAGGT ACTTTGCTTGCTGCC TTTTTATTCATGACA TERM 2198 1945198 - 1945212 + F 84 -6.4 -5.25906 | opp_overlap 1945198 ATTCATGAATGTAAA GTATGC TAA GCGTAC TTTTTCTTAATTTCT Cphy_1581 1945393 - 1946445 + | ABC-type sugar transport system periplasmic component-like protein TERM 2199 1947462 - 1947439 - g 100 -8.2 -5.15167 | TAGTATTAAGAAAAA TCATGAGGTG GTAG CACTTCATGA GGAAATCGAACTGGT Cphy_1582 1946429 - 1947925 + | signal transduction histidine kinase, LytS Cphy_1583 1947918 - 1949519 + | two component AraC family transcriptional regulator Cphy_1584 1949516 - 1950559 + | periplasmic binding protein/LacI transcriptional regulator Cphy_1585 1950754 - 1951821 + | putative solute-binding component of ABC transporter TERM 2200 1951915 - 1951869 - f 75 -8.2 -3.66497 | gap 1, opp_overlap 1951869 CAATAAATTTCGAAA CGGTTGGAGTTAAGCTACT AAGGGAAGAA AG-AGCTTATCCCCAACCG TTTTATCAATATTTC TERM 2201 1951869 - 1951915 + F 72 -6 -4.48877 | gap 1, opp_overlap 1951869 CAATAAATTTCGAAA CGGTTGGAGTTAAGCTACT AAGGGAAGAA AG-AGCTTATCCCCAACCG TTTTATCAATATTTC TERM 2202 1953199 - 1953181 - g 74 -4.6 -4.91084 | opp_overlap 1953185, overlap 1953185 AAGAAAAGTTAAAAA CAAAGTGT CCA ACAGTTTG GCAAAATGTAGGAAA TERM 2203 1953215 - 1953185 - g 72 -4 -4.92828 | opp_overlap 1953185, overlap 1953181 AAAGTTAAAAACAAA GTGTCCAACAGTTT GGC AAAATGTAGGAAAC TTAAGTGGTGGAAAC Cphy_1586 1951989 - 1953530 + | ABC transporter related TERM 2204 1954318 - 1954306 - g 75 -5.5 -4.74132 | opp_overlap 1954306 1954311 ATATTTCATCAAAAA CAACC GTG GGTCG TCACTTTTACGCTGT Cphy_1587 1953534 - 1954712 + | monosaccharide-transporting ATPase TERM 2205 1954736 - 1954763 + F 100 -12.9 -4.66953 | opp_overlap 1954736 TGATAGAGATTTAAA CGAAGAGTCTA ACATAC TAGACTCTTCG TTTTTCACCTCTTAC TERM 2206 1954763 - 1954736 - f 100 -13.6 -3.75535 | opp_overlap 1954736 TGATAGAGATTTAAA CGAAGAGTCTAA CATA CTAGACTCTTCG TTTTTCACCTCTTAC TERM 2207 1955084 - 1955072 - g 72 -7.7 -3.79788 | opp_overlap 1955070 1955072, overlap 1955065 GGAAAAAAGAAGTAA CACTC TCA GAGTG TCTTTCCTATAGTAC Cphy_1588 1954999 - 1956150 + | SecC motif-containing protein TERM 2208 1956291 - 1956323 + F 100 -11.5 -5.1523 | gap 1, opp_overlap 1956288 1956286 1956291 ATCCTAAAAAGAGGA GTACCGAAAGA-GG AGTCAA CCATCTTTCGGTAC TTTTTATATTATGAA TERM 2209 1956323 - 1956291 - f 87 -11.5 -3.02233 | gap 1, opp_overlap 1956291, overlap 1956288 1956286 ATCCTAAAAAGAGGA GTACCGAAAGA-GG AGTCAA CCATCTTTCGGTAC TTTTTATATTATGAA TERM 2210 1957485 - 1957471 - g 79 -5 -5.11033 | TACAATGTTAAAAAA GCTTCT AAA AAAAGC AGAGGAATTAGGACT Cphy_1589 1956776 - 1957882 + | hypothetical protein TERM 2211 1957966 - 1957997 + F 87 -11 -3.39142 | gap 1, opp_overlap 1957969, overlap 1957969 GGCTACGCAATTATG GAACCGCCC-TATAA AAA TGATAGGGGCGGTTC TTAATTAGCTGTAGC Cphy_1590 1958047 - 1959417 + | XRE family transcriptional regulator Cphy_1591 1959583 - 1960827 + | major facilitator transporter TERM 2212 1960952 - 1960980 + F 82 -7.6 -4.44355 | opp_overlap 1960952, overlap 1960950 ATTTTATTTATGACA GAAAAAGTTTGT GAAAA GCGAACTTTTTC TTGTTTTTGAGATTA TERM 2213 1962246 - 1962225 - g 70 -8.9 -3.05963 | AGCTTTACGGTAACA TTAAAAGGA AATA TCCTTTTAA GAAAAATAGAGCAGT Cphy_1592 1961088 - 1962812 + | 67 kDa myosin-cross-reactive antigen family protein TERM 2214 1963052 - 1963093 + T 100 -21.2 -5.24531 | opp_overlap 1963052 TCATGAATCAAAAAA GCAGATGGCATGAGTTGT TAATAT ACAATTCATGCCATCTGC TTTTTTATGAAAAAT TERM 2215 1963093 - 1963052 - T 100 -19 -5.30155 | opp_overlap 1963052 TCATGAATCAAAAAA GCAGATGGCATGAGTTGT TAATAT ACAATTCATGCCATCTGC TTTTTTATGAAAAAT Cphy_1593 1964513 - 1963131 - | MATE efflux family protein TERM 2216 1964540 - 1964572 + H 93 -10 -4.24786 | opp_overlap 1964543 TTCCTTTATTCATGA CAAGGAAAAGTTCG CGAAT CGTACTTTTTCTTG TTTGTATGTTATAGA TERM 2217 1964759 - 1964775 + H 79 -6.7 -4.72986 | TAACCTTTCCTCTCA TATCTAA TGC TTAGATA TTTTTCGTAAACATA Cphy_1594 1964825 - 1965385 + | hypothetical protein Cphy_1595 1965566 - 1966474 + | hypothetical protein TERM 2218 1966484 - 1966512 + F 100 -8.2 -5.47431 | opp_overlap 1966484 1966482 TATTAAAAAATACGA GGTGTTGATACG TTTTT TGTAGCAACACC TTTTTTATATATTAG TERM 2219 1966637 - 1966653 + F 81 -2.9 -5.86965 | overlap 1966639 GCTCTGCTGCGGCGA TGCCGGT GTG ACTGGGA TTTTTTTTGCTGAAT TERM 2220 1967417 - 1967439 + G 84 -12.2 -2.76964 | opp_overlap 1967423, overlap 1967415 1967413 1967423 GCTTCAGACCGTATC CGATAACTTT GAA AAAGTTATCG TGGTGTTAAATATCG TERM 2221 1968731 - 1968743 + G 74 -7.7 -3.96093 | overlap 1968729 CCCAAGTGCCACTGC GGTAG CCG CTACC TTTAATATTGCTCTG Cphy_1596 1966899 - 1969457 + | glycoside hydrolase family 3 protein TERM 2222 1969629 - 1969595 - f 100 -12.3 -4.8083 | opp_overlap 1969595 GAATATTAGTAAAAA GGCAGACGAAACACT TAATT AATGTTTCTTCTGCC TTTTTTGGTGACATG TERM 2223 1969595 - 1969629 + F 100 -10.1 -5.15634 | opp_overlap 1969595 GAATATTAGTAAAAA GGCAGACGAAACACT TAATT AATGTTTCTTCTGCC TTTTTTGGTGACATG Cphy_1597 1969774 - 1970778 + | 2,3-diketo-L-gulonate reductase TERM 2224 1970892 - 1970935 + F 95 -10.6 -4.18019 | ATAAGAGTTCAATTG CAGGTATCTGGAAACAAT AGGAGTAA ATTGTTTTTGGATACCTG TTTCTATATAGTTCT TERM 2225 1971406 - 1971437 + F 81 -2.3 -6.00086 | AAACGATGTTTTAGA TCCGTTCTGAACG AAGTGG TGTTTAGGAGGGA TTTTTTTTATGCTAT Cphy_1598 1971446 - 1972876 + | ABC transporter related TERM 2226 1972893 - 1972925 + F 100 -16.5 -5.00616 | opp_overlap 1972893 1972896 1972902, overlap 1972902 AGATTTTTATTCAAA CAAGGGAAAGTACGC AAA GCGTACTTTTTCTTG TTTTTTAGGGCAGAA TERM 2227 1972925 - 1972893 - f 95 -12.1 -3.65529 | opp_overlap 1972893 1972902, overlap 1972896 1972902 AGATTTTTATTCAAA CAAGGGAAAGTACGC AAA GCGTACTTTTTCTTG TTTTTTAGGGCAGAA TERM 2228 1972922 - 1972896 - f 79 -8 -3.96216 | opp_overlap 1972893 1972902, overlap 1972893 1972902 TTTTTATTCAAACAA GGGAAAGTACGC AAA GCGTACTTTTTC TTGTTTTTTAGGGCA TERM 2229 1972916 - 1972902 - f 87 -10 -3.89435 | opp_overlap 1972893 1972902, overlap 1972896 1972893 TTCAAACAAGGGAAA GTACGC AAA GCGTAC TTTTTCTTGTTTTTT TERM 2230 1972902 - 1972916 + F 100 -10 -5.54403 | opp_overlap 1972902 1972896 1972893, overlap 1972893 TTCAAACAAGGGAAA GTACGC AAA GCGTAC TTTTTCTTGTTTTTT TERM 2231 1972931 - 1972961 + F 88 -6.3 -5.48825 | gap 1 CTTTTTCTTGTTTTT TAGGGCAGAAAGAT TTCT ATCTTTG-GCCCTA TTTTTTTGCCTGATA TERM 2232 1974037 - 1974061 + G 75 -8.7 -3.53811 | opp_overlap 1974037 1974039 TAATGAGTTTAATGA TATTTGTGCCA TGT TGGAACAAATA TTTGAACAAAATGGA TERM 2233 1974139 - 1974129 - g 72 -4 -4.98616 | overlap 1974123 CTAAAATAGCAAAAA GTTT TCG AAAC TTAGAGGACTGTTCT Cphy_1599 1973255 - 1974241 + | hypothetical protein TERM 2234 1974357 - 1974390 + F 93 -9.7 -4.71061 | opp_overlap 1974358, overlap 1974358 TACTTTCTATGAAGA ATGGTGGTGAATC GAAAGAAG GATTCACCACCAA TTTTTGAATCTAAAT TERM 2235 1974358 - 1974389 + F 100 -13.2 -3.41913 | opp_overlap 1974358, overlap 1974357 ACTTTCTATGAAGAA TGGTGGTGAATC GAAAGAAG GATTCACCACCA ATTTTTGAATCTAAA TERM 2236 1974389 - 1974358 - f 100 -13.2 -3.72027 | opp_overlap 1974357 1974358 ACTTTCTATGAAGAA TGGTGGTGAATC GAAAGAAG GATTCACCACCA ATTTTTGAATCTAAA Cphy_1600 1974864 - 1975601 + | LytTR family two component transcriptional regulator TERM 2237 1976920 - 1976908 - g 77 -2.7 -5.55664 | TGATCAGGAAAAAAA GATCT TTA AAATC AGAGTTTGCATTCCC Cphy_1601 1975622 - 1976962 + | signal transduction histidine kinase regulating citrate/malate metabolism TERM 2238 1977027 - 1977051 + T 100 -16.5 -3.52475 | opp_overlap 1977023 TCGTTAACTCACTTT TACCGCCTCCT TTG GGGAGGCGGTA TTGTACTATATTGCG Cphy_1602 1978428 - 1977172 - | diguanylate cyclase with PAS/PAC sensor TERM 2239 1977276 - 1977266 - G 81 -5.4 -5.10208 | GAATCGGAAGAAAAA GGTA CAA TACC GTAACTAAAGGACAG Cphy_1603 1978995 - 1978474 - | 4-vinyl reductase 4VR TERM 2240 1978956 - 1978977 + g 71 -4.3 -4.74518 | overlap 1978960 CAATATCTCCAAGCC CCTCCCAAG TAAA CTTGGTTGG TTTGTTTTCATAATT TERM 2241 1979299 - 1979281 - H 71 -7.5 -3.43553 | CAATTGAATACAAGA TTTCCCT GAAAA AGGGAAA AAATAGAATAATATG Cphy_1604 1979453 - 1979737 + | LuxR family transcriptional regulator TERM 2242 1979759 - 1979790 + F 100 -11.8 -5.05782 | opp_overlap 1979759 ATATGTTATGAAAAA TGGTGATGAATC GAAAGAAG GATTCATCACCA TTTTTTAGAATCGGT TERM 2243 1979790 - 1979759 - f 100 -11.8 -4.74132 | opp_overlap 1979759 ATATGTTATGAAAAA TGGTGATGAATC GAAAGAAG GATTCATCACCA TTTTTTAGAATCGGT Cphy_1605 1979970 - 1980269 + | hypothetical protein Cphy_1606 1980311 - 1980604 + | hypothetical protein TERM 2244 1980661 - 1980626 - T 100 -12.1 -4.26076 | opp_overlap 1980654 CTATTTTGATGAAAA GACGAGAAGTTAAAC TATTAC ATTCAACTTCTCGTC AAACTAGAATTTATT Cphy_1607 1981040 - 1980672 - | hypothetical protein TERM 2245 1981266 - 1981249 - H 87 -8.5 -4.31692 | opp_overlap 1981249 AATTGATTAGTAAAA GCAACTA GAAA TAGTTGC TGTAATAGAATAATA TERM 2246 1981249 - 1981266 + H 71 -8.5 -2.80113 | opp_overlap 1981249 AATTGATTAGTAAAA GCAACTA GAAA TAGTTGC TGTAATAGAATAATA Cphy_1608 1981367 - 1981924 + | CDP-alcohol phosphatidyltransferase TERM 2247 1982062 - 1982103 + T 76 -6.1 -4.55697 | opp_overlap 1982065 1982068, overlap 1982065 TGGAATAATACAATG AAAGAATAGAAAACCAA GGCATGAA TTGGATTTCTATTCTTC TTTATTTCTAAGGGT TERM 2248 1982100 - 1982065 - T 77 -7.8 -4.10731 | opp_overlap 1982062 1982065, overlap 1982068 AATAATACAATGAAA GAATAGAAAACCAA GGCATGAA TTGGATTTCTATTC TTCTTTATTTCTAAG TERM 2249 1982065 - 1982100 + T 82 -7.8 -4.38748 | opp_overlap 1982065 1982068, overlap 1982062 AATAATACAATGAAA GAATAGAAAACCAA GGCATGAA TTGGATTTCTATTC TTCTTTATTTCTAAG Cphy_1609 1983036 - 1982218 - | MerR family transcriptional regulator TERM 2250 1982311 - 1982331 + g 91 -4.7 -5.80248 | ATATTCATAGGATGG GGAGGCTAT CTG ATAACCTTC TTTTTTTATATATTC TERM 2251 1983413 - 1983423 + G 75 -5.4 -4.72863 | CTTTTATTAGGTGTT GCTA TAT TAGC TTTTGGTTTGTTTAA Cphy_1610 1983350 - 1983982 + | hypothetical protein Cphy_1611 1984075 - 1985223 + | hypothetical protein TERM 2252 1985295 - 1985328 + F 93 -8.3 -5.252 | AGACAGGACTTTTTT TAGGAGAGGGCTA TGATAGAT TAGCCTTTTCCTA TTTTTTGTGAAAATG TERM 2253 1986265 - 1986245 - g 90 -6.9 -5.13648 | TAAATATAAAGAAAA CTTCCAACG TAA CATTAGAAG GTATCGGAGACGATG Cphy_1612 1985551 - 1989780 + | Pectate lyase/Amb allergen TERM 2254 1989830 - 1989855 + F 93 -9.8 -4.56607 | opp_overlap 1989830 TCCATTTCTAGTAGA GGGTGAGATT CTAAGT AGTCTCACCC TTTTATCATTCATGA Cphy_1613 1990158 - 1990991 + | MerR family transcriptional regulator TERM 2255 1991118 - 1991153 + F 100 -11.4 -4.52589 | opp_overlap 1991118 1991121, overlap 1991125 ATATTAAAGTAGTAA TAAGAAGCAGGCAAGA TTTA TTTTGTCTGTTTCTTA TTTTATATAAAAGGA TERM 2256 1991125 - 1991146 + F 78 -5.9 -4.73973 | opp_overlap 1991121 1991118, overlap 1991118 AGTAGTAATAAGAAG CAGGCAAGA TTTA TTTTGTCTG TTTCTTATTTTATAT Cphy_1614 1991341 - 1991967 + | glycosyl transferase family protein TERM 2257 1992049 - 1992069 + F 100 -9.7 -5.67967 | opp_overlap 1992048 1992046 1992049 TACTTATATGAAGAG GCAGTCTCA AAA TGAGTCTGC TTTTTTTGTAATAGT TERM 2258 1992069 - 1992049 - f 74 -9.7 -2.52023 | opp_overlap 1992049, overlap 1992048 1992046 TACTTATATGAAGAG GCAGTCTCA AAA TGAGTCTGC TTTTTTTGTAATAGT TERM 2259 1993371 - 1993352 - f 73 -8 -3.43412 | overlap 1993356 AAGTCAATAAATAGA TCAACTTT AAAC AAAGTTGA AGATATTAAATATGA Cphy_1617 1994587 - 1994985 + | NUDIX hydrolase TERM 2260 1995019 - 1995055 + F 100 -18.1 -4.67943 | TACCGACTGCCCGCA CCGCCTTCACACTAGTT AAA AGCTAGAGTGGAGGCGG TTTTATATCTTCCCA Cphy_1618 1995126 - 1997270 + | hypothetical protein TERM 2261 1997407 - 1997451 + T 89 -12.6 -2.51738 | gap 1, opp_overlap 1997413 1997416, overlap 1997413 1997448 ATAGCGAAAGCATTG ATTAAATAG-CCAGATAGAAA AAGT TTTCTATCTGGGCTATTTAAA GTTAATAACCTTATT TERM 2262 1997413 - 1997445 + T 93 -11.6 -3.67976 | gap 1, opp_overlap 1997413 1997416, overlap 1997407 AAAGCATTGATTAAA TAG-CCAGATAGAAA AAGT TTTCTATCTGGGCTA TTTAAAGTTAATAAC TERM 2263 1997445 - 1997413 - T 95 -11.6 -3.78312 | gap 1, opp_overlap 1997413 1997407, overlap 1997416 AAAGCATTGATTAAA TAG-CCAGATAGAAA AAGT TTTCTATCTGGGCTA TTTAAAGTTAATAAC TERM 2264 1997441 - 1997416 - T 100 -13.5 -2.67667 | opp_overlap 1997413 1997407, overlap 1997413 GCATTGATTAAATAG CCAGATAGAAA AAGT TTTCTATCTGG GCTATTTAAAGTTAA Cphy_1619 1997972 - 1997583 - | hypothetical protein TERM 2265 1998270 - 1998294 + H 75 -8.1 -3.70505 | opp_overlap 1998284, overlap 1998265 AGACTTTGAACTATT TTATAGTATAA TAA TTATGCTATAA TTTAAGATTCATTTA Cphy_1620 1998403 - 1999086 + | two component transcriptional regulator Cphy_1621 1999092 - 2000402 + | integral membrane sensor signal transduction histidine kinase TERM 2266 2000414 - 2000433 + F 76 -8.6 -3.42985 | opp_overlap 2000412, overlap 2000413 TTAACGATGAAAGGT TCTCGGGT GAAA ATCCGAGA CTTTTTGGCTCTGTA TERM 2267 2000442 - 2000499 + F 87 -10.1 -3.81472 | gap 1, overlap 2000442 TCCGAGACTTTTTGG CTCTGTACTATGTATTT-AGGGAGATTC ATT GAAACTCACAAAAATACTTAGTGCAGAG CTTTTTTGATTTAAA TERM 2268 2000442 - 2000500 + F 77 -4.1 -5.37593 | gap 2, overlap 2000442 TCCGAGACTTTTTGG -CTCTGTACTATGTATTT-AGGGAGATTC ATT GAAACTCACAAAAATACTTAGTGCAGAGC TTTTTTGATTTAAAA Cphy_1622 2000607 - 2000990 + | hypothetical protein TERM 2269 2001092 - 2001080 - g 74 -2.7 -5.28778 | overlap 2001081 AGGAGCTAGAAAAAA TGTAC ATT ATACA AAATGCACTTAAAAA TERM 2270 2002235 - 2002225 - g 81 -5.4 -5.14965 | ATGGGTATGAAAAAA GCTA AGG TAGC ACTTGGAATTTGGAC Cphy_1623 2001079 - 2002623 + | hypothetical protein Cphy_1624 2002633 - 2003304 + | ABC transporter related TERM 2271 2003349 - 2003387 + T 100 -9.7 -5.27779 | TGTCAAGTAGCATCA GGGATAACTGAGATGGT GAATA ACCATTAAAGTTATCCC TTTTTTAGTGTTCCA Cphy_1625 2004127 - 2003438 - | methyltransferase type 12 TERM 2272 2004672 - 2004656 - g 86 -4.5 -5.67063 | TGTATTATAAAAAAA TAAGAAT TGC ATCCTTA CCTAGTAAGAAGATG Cphy_1626 2004412 - 2005554 + | acyl-protein synthetase LuxE TERM 2273 2006623 - 2006609 - g 71 -8.6 -3.14554 | opp_overlap 2006609, overlap 2006607 2006600 CAAGAACAAAGGATA CCTACA GAC TGTAGG TTTGGTTTGTCAGGA TERM 2274 2006609 - 2006623 + G 81 -8.6 -4.13995 | opp_overlap 2006609 2006607 2006600 CAAGAACAAAGGATA CCTACA GAC TGTAGG TTTGGTTTGTCAGGA Cphy_1627 2005551 - 2006798 + | acyl-CoA reductase Cphy_1628 2006810 - 2007739 + | hypothetical protein TERM 2275 2007814 - 2007762 - T 100 -10.8 -5.4659 | opp_overlap 2007763, overlap 2007763 CAATAGAAAGAAAAA TGCACCCTCCATTATCCGTACAAA TTTTG TCTATATAGATAATGAAGGGTGCT TTTATGTTAGCTTAG TERM 2276 2007763 - 2007813 + T 85 -8.4 -4.7033 | opp_overlap 2007763 2007762 AATAGAAAGAAAAAT GCACCCTCCATTATCCGTACAAAT TTT GTCTATATAGATAATGAAGGGTGC TTTTATGTTAGCTTA TERM 2277 2007813 - 2007763 - T 100 -14.3 -3.85514 | opp_overlap 2007763, overlap 2007762 AATAGAAAGAAAAAT GCACCCTCCATTATCCGTACAAA TTTTG TCTATATAGATAATGAAGGGTGC TTTTATGTTAGCTTA Cphy_1629 2008420 - 2007830 - | hypothetical protein Cphy_1630 2009668 - 2008475 - | aldo/keto reductase TERM 2278 2009743 - 2009775 + H 74 -8.5 -3.20723 | opp_overlap 2009710 2009731 2009746, overlap 2009746 TAACGTTATTTATGA CAAGGAAAAGTTCAC AGA GCGTACTTTTTCTTG TTGCATTGATAACGC TERM 2279 2009877 - 2009861 - H 89 -10.9 -3.62011 | ATAGTGAAAGGAGAA GTCGTAG TTT CTACGAC TAAAATATATTATGA Cphy_1631 2009889 - 2010590 + | hypothetical protein TERM 2280 2010741 - 2010715 - f 91 -9.5 -4.44797 | opp_overlap 2010717, overlap 2010717 TCATTAACATTAAAA GAGGCATGCAA TAAAT TTGCATGCCTT AAATCGTCTTATTTA TERM 2281 2010717 - 2010739 + F 89 -12.1 -3.14548 | opp_overlap 2010717 2010715 ATTAACATTAAAAGA GGCATGCAA TAAAT TTGCATGCC TTAAATCGTCTTATT TERM 2282 2010739 - 2010717 - f 100 -12.1 -3.82455 | opp_overlap 2010717, overlap 2010715 ATTAACATTAAAAGA GGCATGCAA TAAAT TTGCATGCC TTAAATCGTCTTATT Cphy_1632 2010991 - 2013102 + | ATP-dependent DNA helicase rep TERM 2283 2013213 - 2013260 + F 78 -2.3 -5.7946 | gap 3, opp_overlap 2013213 2013230 2013231, overlap 2013231 TCATATAAAAAATAG GACTTAATCAGGTATAATCCCCGA AAT TCGAGGCTT-T-C-TGATTAAGTC TTTTTTTCTTAAAAA TERM 2284 2013330 - 2013302 - f 77 -4.1 -5.40072 | gap 1 GGGGCTTGAAAAAAA TAGTCAAT-TCA TTATAC TGATATTGACTA AATCGGTTAATAAGG TERM 2285 2013663 - 2013677 + G 81 -7.2 -4.66609 | opp_overlap 2013663 ACTTATAGAAAGAAA TCCATA TCT TATGGA TTTTTCAATGAAATG TERM 2286 2013677 - 2013663 - g 81 -7.2 -4.63044 | opp_overlap 2013663 ACTTATAGAAAGAAA TCCATA TCT TATGGA TTTTTCAATGAAATG Cphy_1633 2013355 - 2013987 + | TetR family transcriptional regulator TERM 2287 2014567 - 2014557 - g 70 -3.2 -5.04987 | overlap 2014546 AAGAGGTTGAAAAAA CCTG TGA CAGA GCAGTTATTATAAAA Cphy_1634 2013974 - 2014867 + | ABC transporter related Cphy_1635 2014860 - 2015660 + | hypothetical protein TERM 2288 2015690 - 2015725 + F 79 -8.4 -4.13014 | gap 1, opp_overlap 2015692 2015693, overlap 2015693 TTGTGATACTTTATT AAGGGGTGCTATTCAAG TAG TTTGAATGGC-CCCCTA TTTTAACGCTCTGCA TERM 2289 2015723 - 2015692 - f 70 -8.1 -3.17763 | gap 1, opp_overlap 2015690 2015693, overlap 2015693 GTGATACTTTATTAA GGGGTGCTATTCAA GTAGT TTGAATGGC-CCCC TATTTTAACGCTCTG TERM 2290 2015693 - 2015723 + F 89 -11.2 -3.66256 | opp_overlap 2015692 2015693, overlap 2015690 TGATACTTTATTAAG GGGTGCTATTCAAG TAG TTTGAATGGCCCCC TATTTTAACGCTCTG Cphy_1636 2016021 - 2017391 + | methyl-accepting chemotaxis sensory transducer TERM 2291 2017482 - 2017519 + T 100 -16.5 -5.05782 | opp_overlap 2017482 TGATTAGAATAAAAA GGTATGAACTTCTCCAA GTAC TCGGAGAGGTTCATACC TTTTTTAAAATAGCT TERM 2292 2017519 - 2017482 - T 100 -16.5 -5.22006 | opp_overlap 2017482 TGATTAGAATAAAAA GGTATGAACTTCTCCAA GTAC TCGGAGAGGTTCATACC TTTTTTAAAATAGCT Cphy_1637 2018096 - 2017524 - | hypothetical protein TERM 2293 2018208 - 2018178 - H 93 -7 -5.47159 | opp_overlap 2018178, overlap 2018207 TTTCAATACAAAAAA GACCTATCTGTG TTATTGC CACAAATAAGTC TCGTTATTCAAAGTA Cphy_1638 2018690 - 2018911 + | hypothetical protein TERM 2294 2018964 - 2018991 + T 72 -8.6 -3.05596 | opp_overlap 2018964, overlap 2018967 2018990 CAGTTCAAAAGAAAA TAACCTGTCA AGCCATTG TGACAGGTTA TTCGCTAAAAAGGTG TERM 2295 2018991 - 2018964 - T 95 -8.6 -5.09259 | opp_overlap 2018964 2018967 2018990 CAGTTCAAAAGAAAA TAACCTGTCA AGCCATTG TGACAGGTTA TTCGCTAAAAAGGTG Cphy_1639 2020744 - 2019044 - | methyl-accepting chemotaxis sensory transducer Cphy_1640 2021389 - 2022114 + | hypothetical protein TERM 2296 2022338 - 2022297 - f 83 -11.1 -2.80929 | opp_overlap 2022297 2022303, overlap 2022303 GAATATAAACAACAT TTAAAACAGGAAGAAGGAT TTTC ATCGCTCTTCCTGTTTTTA TCATGTAACGCATAA TERM 2297 2022297 - 2022338 + F 72 -8.9 -2.62616 | opp_overlap 2022297 2022303, overlap 2022303 GAATATAAACAACAT TTAAAACAGGAAGAAGGAT TTTC ATCGCTCTTCCTGTTTTTA TCATGTAACGCATAA TERM 2298 2022332 - 2022303 - f 93 -10.1 -4.32951 | opp_overlap 2022297 2022303, overlap 2022297 AAACAACATTTAAAA CAGGAAGAAGGAT TTTC ATCGCTCTTCCTG TTTTTATCATGTAAC TERM 2299 2022303 - 2022332 + F 89 -7.9 -4.95155 | opp_overlap 2022303 2022297, overlap 2022297 AAACAACATTTAAAA CAGGAAGAAGGAT TTTC ATCGCTCTTCCTG TTTTTATCATGTAAC Cphy_1641 2023075 - 2023380 + | metallophosphoesterase Cphy_1642 2023528 - 2024505 + | hypothetical protein TERM 2300 2024510 - 2024556 + T 100 -9.6 -5.40464 | opp_overlap 2024512, overlap 2024511 2024512 TATCACAATAAAATA AAGCGATAACAACTTAATTCTT ACT ATGAAATAAGTTGTTATCGCAC TTTTTATTTATGATA TERM 2301 2024511 - 2024555 + T 100 -13.1 -3.82652 | opp_overlap 2024512, overlap 2024510 2024512 ATCACAATAAAATAA AGCGATAACAACTTAATTCTT ACT ATGAAATAAGTTGTTATCGCA CTTTTTATTTATGAT TERM 2302 2024512 - 2024554 + T 100 -16.6 -2.87964 | opp_overlap 2024512, overlap 2024511 2024510 TCACAATAAAATAAA GCGATAACAACTTAATTCTT ACT ATGAAATAAGTTGTTATCGC ACTTTTTATTTATGA TERM 2303 2024554 - 2024512 - T 100 -16.6 -4.92812 | opp_overlap 2024512 2024511 2024510 TCACAATAAAATAAA GCGATAACAACTTAATTCTT ACT ATGAAATAAGTTGTTATCGC ACTTTTTATTTATGA Cphy_1643 2025863 - 2024682 - | lysine 2,3-aminomutase YodO family protein Cphy_1644 2026923 - 2025880 - | D-alanine--D-alanine ligase domain-containing protein TERM 2304 2027569 - 2027536 - g 71 -9.1 -3.11727 | opp_overlap 2027541, overlap 2027526 2027534 2027539 2027563 AAGAATTCCAATATA GAATATGCTTCATTT TATC AAATGGAACATATTC AAAAAAGTATATTCG Cphy_1645 2027497 - 2028747 + | hypothetical protein TERM 2305 2028882 - 2028835 - T 91 -7.1 -5.26918 | gap 1, opp_overlap 2028835 2028836 2028837 2028851, overlap 2028837 ACATTGCATAAAAAA GAGGAGCATCGCTCGATAGCTA CGAAT TAGCTATTTTGCAATGCTCC-C ATTTTTATGCGCACT TERM 2306 2028837 - 2028881 + T 82 -10.8 -2.6933 | opp_overlap 2028835 2028837, overlap 2028836 2028835 2028851 ATTGCATAAAAAAGA GGAGCATCGCTCGATAGCTA CGAAT TAGCTATTTTGCAATGCTCC CATTTTTATGCGCAC TERM 2307 2028881 - 2028837 - T 100 -10.8 -4.26475 | opp_overlap 2028837 2028836 2028835 2028851, overlap 2028835 ATTGCATAAAAAAGA GGAGCATCGCTCGATAGCTA CGAAT TAGCTATTTTGCAATGCTCC CATTTTTATGCGCAC TERM 2308 2028999 - 2029031 + T 100 -19.3 -2.97425 | opp_overlap 2029002 2029008, overlap 2029002 2029008 GCCACTTTTTTATGA CAAGGAAAAGCTCGC AAA GCGTGCTTTTCCTTG TATATAGATTATCTC TERM 2309 2029028 - 2029002 - T 100 -15.2 -3.40522 | opp_overlap 2028999 2029002 2029008, overlap 2029008 ACTTTTTTATGACAA GGAAAAGCTCGC AAA GCGTGCTTTTCC TTGTATATAGATTAT TERM 2310 2029002 - 2029028 + T 100 -15.2 -3.62384 | opp_overlap 2029002 2029008, overlap 2028999 2029008 ACTTTTTTATGACAA GGAAAAGCTCGC AAA GCGTGCTTTTCC TTGTATATAGATTAT TERM 2311 2029022 - 2029008 - T 78 -7 -4.51174 | opp_overlap 2029002 2028999 2029008, overlap 2029002 TTATGACAAGGAAAA GCTCGC AAA GCGTGC TTTTCCTTGTATATA TERM 2312 2029008 - 2029022 + T 79 -7 -4.5464 | opp_overlap 2029008 2029002, overlap 2029002 2028999 TTATGACAAGGAAAA GCTCGC AAA GCGTGC TTTTCCTTGTATATA Cphy_1646 2029397 - 2029101 - | hypothetical protein TERM 2313 2029460 - 2029483 + H 71 -7.6 -3.48617 | opp_overlap 2029460 2029458, overlap 2029458 2029463 TATGTGACAAAAATT GAGCTTATTT TCAT AAATAAGTTC TATTTAAAATTTTTT Cphy_1647 2029651 - 2030550 + | helix-turn-helix type 11 domain-containing protein TERM 2314 2030730 - 2030700 - f 74 -9.8 -2.77332 | opp_overlap 2030705, overlap 2030705 ATTTAAATTAAATAG GGAAACATGACTAC TAA GTAGGCATGTTTTC AAGTACGAAAAAAGA TERM 2315 2030725 - 2030705 - f 77 -8.3 -3.82811 | opp_overlap 2030705, overlap 2030700 AATTAAATAGGGAAA CATGACTAC TAA GTAGGCATG TTTTCAAGTACGAAA TERM 2316 2030705 - 2030725 + F 79 -8.3 -4.13767 | opp_overlap 2030705 2030700 AATTAAATAGGGAAA CATGACTAC TAA GTAGGCATG TTTTCAAGTACGAAA TERM 2317 2031007 - 2030989 - g 74 -3.8 -5.19879 | GCTGAAATACAAAAA CAACCAGG AGA CATGGTTA AAGTTACTATTAAAG Cphy_1648 2030764 - 2031045 + | hypothetical protein TERM 2318 2031302 - 2031290 - g 76 -3.3 -5.26316 | GCAGGTCATAAAAAA GCGTC ACA GATGC AGGAGAATTCAAAAT Cphy_1649 2031152 - 2031319 + | hypothetical protein Cphy_1650 2031316 - 2032047 + | metal dependent phosphohydrolase TERM 2319 2032243 - 2032203 - f 74 -7 -4.24342 | opp_overlap 2032205, overlap 2032205 CTTGTCATGAATAAA GAGCTGTTGCAAAATAAT GGATA ATTATAATGCAACAGCTT TTCATATTTAGTGTG TERM 2320 2032205 - 2032241 + F 91 -9.6 -4.51363 | opp_overlap 2032205 2032203 TGTCATGAATAAAGA GCTGTTGCAAAATAAT GGATA ATTATAATGCAACAGC TTTTCATATTTAGTG TERM 2321 2032241 - 2032205 - f 82 -9.6 -3.72374 | opp_overlap 2032205, overlap 2032203 TGTCATGAATAAAGA GCTGTTGCAAAATAAT GGATA ATTATAATGCAACAGC TTTTCATATTTAGTG TERM 2322 2032628 - 2032608 - g 76 -10.5 -2.71681 | opp_overlap 2032608 TAATCGGGTTAATTA GCTTAGGTA CAT TACCCAAGC TATTACCCAACCCTT Cphy_1651 2032316 - 2033584 + | major facilitator transporter Cphy_1652 2033850 - 2035121 + | peptidoglycan-binding LysM TERM 2323 2035141 - 2035172 + F 100 -12.5 -4.5265 | AGTTAGGTTAGAGTT GTAGGCATCATGA GGTTTG TCATGATGCTTAC TTTTCTGCTATGATT Cphy_1653 2035516 - 2035947 + | hemerythrin-like metal-binding protein TERM 2324 2035998 - 2035941 - f 100 -23.4 -3.89411 | opp_overlap 2035941 2035945, overlap 2035945 TGAAAATATCAAGAA GAAATAAGGGGTTTAAGCAAAATT AAGGATAGAG AATTTTGCTTAAACCCCTTATTTC TTTGATTTAAATAAT TERM 2325 2035941 - 2035998 + F 100 -23.4 -4.08887 | opp_overlap 2035941 2035945, overlap 2035945 TGAAAATATCAAGAA GAAATAAGGGGTTTAAGCAAAATT AAGGATAGAG AATTTTGCTTAAACCCCTTATTTC TTTGATTTAAATAAT TERM 2326 2035945 - 2035994 + F 100 -18.4 -4.62772 | opp_overlap 2035941 2035945, overlap 2035941 AATATCAAGAAGAAA TAAGGGGTTTAAGCAAAATT AAGGATAGAG AATTTTGCTTAAACCCCTTA TTTCTTTGATTTAAA TERM 2327 2035994 - 2035945 - f 100 -18.4 -4.51224 | opp_overlap 2035945 2035941, overlap 2035941 AATATCAAGAAGAAA TAAGGGGTTTAAGCAAAATT AAGGATAGAG AATTTTGCTTAAACCCCTTA TTTCTTTGATTTAAA TERM 2328 2036568 - 2036553 - g 74 -2.6 -5.34655 | GAATGAAAAAGAAAA TACTTC TAAG AAAGTA AGTATGACTGGCAAA Cphy_1654 2036308 - 2037972 + | RNA methyltransferase Cphy_1655 2038041 - 2038259 + | hypothetical protein TERM 2329 2038533 - 2038518 - g 72 -4 -5.03314 | gap 1 GTCAGCTCCAAAAAA TGATGCC AGA GGC-TCA AATCGTGCATCGATC TERM 2330 2039082 - 2039070 - g 73 -5.5 -4.71234 | overlap 2039058 AAATTCAAGAGAAAA CCTCC CCT GAAGG TGCAGCCTGCCGATT Cphy_1656 2038430 - 2039125 + | DSBA oxidoreductase TERM 2331 2039200 - 2039233 + F 83 -6.7 -4.87273 | opp_overlap 2039199 2039200, overlap 2039203 2039204 CTATAGTTGAAACAT GTTTTGACGTAAGAG GATA CTCTTACGTCACTTC TTTTTGTAGAATATT TERM 2332 2039203 - 2039230 + F 100 -11.4 -4.53475 | opp_overlap 2039200 2039199, overlap 2039200 2039204 TAGTTGAAACATGTT TTGACGTAAGAG GATA CTCTTACGTCAC TTCTTTTTGTAGAAT TERM 2333 2039204 - 2039229 + F 100 -14.9 -3.31001 | opp_overlap 2039200 2039199, overlap 2039203 2039200 AGTTGAAACATGTTT TGACGTAAGAG GATA CTCTTACGTCA CTTCTTTTTGTAGAA TERM 2334 2039747 - 2039757 + G 70 -5.4 -4.4078 | opp_overlap 2039734, overlap 2039742 TACGCTCGAAGCTGT CAAG CAG CTTG TTTTGATTAAGAAAA Cphy_1657 2039427 - 2040191 + | hypothetical protein Cphy_1658 2040473 - 2041585 + | aldo/keto reductase Cphy_1659 2041739 - 2042551 + | alpha/beta hydrolase fold TERM 2335 2042631 - 2042643 + G 75 -9.1 -3.58343 | opp_overlap 2042623 AACAGAATTGCTGTT CCACC AAT GGTGG TTTACACGTGGTCCG Cphy_1660 2042568 - 2043632 + | NADH:flavin oxidoreductase/NADH oxidase TERM 2336 2043760 - 2043708 - T 100 -28.9 -2.76055 | opp_overlap 2043713 2043717, overlap 2043713 2043717 GGAACATATATAGGA CAAAACAAAGGGAATGTCGGTGTTA TAC TTACACCGACATTCCCTTTGTTTCG ATGAAGACAAGGCTA TERM 2337 2043755 - 2043713 - T 100 -25.2 -4.53765 | opp_overlap 2043713 2043717, overlap 2043708 2043717 ATATATAGGACAAAA CAAAGGGAATGTCGGTGTTA TAC TTACACCGACATTCCCTTTG TTTCGATGAAGACAA TERM 2338 2043713 - 2043755 + T 100 -25.2 -3.64703 | opp_overlap 2043713 2043708 2043717, overlap 2043717 ATATATAGGACAAAA CAAAGGGAATGTCGGTGTTA TAC TTACACCGACATTCCCTTTG TTTCGATGAAGACAA TERM 2339 2043717 - 2043751 + T 100 -20.2 -4.46112 | opp_overlap 2043713 2043708 2043717, overlap 2043713 ATAGGACAAAACAAA GGGAATGTCGGTGTTA TAC TTACACCGACATTCCC TTTGTTTCGATGAAG TERM 2340 2043751 - 2043717 - T 100 -20.2 -4.81357 | opp_overlap 2043717 2043713, overlap 2043713 2043708 ATAGGACAAAACAAA GGGAATGTCGGTGTTA TAC TTACACCGACATTCCC TTTGTTTCGATGAAG TERM 2341 2043815 - 2043843 + T 70 -4.5 -4.78572 | overlap 2043819 CAGCGAGGTAGAACC TGAAGGGAGGCAG CAA CTACTTCCCATTA TTTTGTTGATTCAGA Cphy_1661 2044175 - 2043831 - | HxlR family transcriptional regulator Cphy_1662 2044365 - 2044691 + | cupin 2 domain-containing protein Cphy_1663 2044731 - 2045111 + | glyoxalase/bleomycin resistance protein/dioxygenase Cphy_1664 2045639 - 2045971 + | hypothetical protein Cphy_1665 2045989 - 2046309 + | hypothetical protein TERM 2342 2046553 - 2046523 - f 100 -9.9 -5.53079 | opp_overlap 2046523 AAAAGAGAGAAAAAA TAGGGCTGAAAAA GTGCA TTTTTTAGCCCTA TTTTTTGACTTTTAT TERM 2343 2046523 - 2046553 + F 100 -12.1 -5.28315 | opp_overlap 2046523 AAAAGAGAGAAAAAA TAGGGCTGAAAAA GTGCA TTTTTTAGCCCTA TTTTTTGACTTTTAT TERM 2344 2046623 - 2046650 + F 82 -7.9 -4.39166 | opp_overlap 2046649, overlap 2046643 AGGATGCTTCGGAGT TCTTTTACTTC GGTCTG GAGGTAAAAGA TTTTACTGTATCAAG TERM 2345 2046695 - 2046677 - f 70 -4.4 -4.80959 | opp_overlap 2046680, overlap 2046649 2046678 CAAGGTACAATAAAA CCACTGGC TAT GCCGGTGT GTCCCTAATTACTTA TERM 2346 2046694 - 2046678 - f 71 -7.9 -3.47491 | opp_overlap 2046680, overlap 2046677 AAGGTACAATAAAAC CACTGGC TAT GCCGGTG TGTCCCTAATTACTT Cphy_1666 2046953 - 2047750 + | phosphate ABC transporter, ATPase subunit TERM 2347 2048586 - 2048601 + G 81 -4.6 -5.38958 | opp_overlap 2048578, overlap 2048578 2048588 AATAAATGGCAGCTA CAGCCT GTCT AGGCCG TTTTTGTTTGTCACT Cphy_1667 2047894 - 2048733 + | phosphate binding protein Cphy_1668 2048730 - 2049575 + | phosphate ABC transporter, inner membrane subunit PstC Cphy_1669 2049583 - 2050419 + | phosphate ABC transporter, inner membrane subunit PstA Cphy_1670 2050430 - 2051191 + | ABC transporter related Cphy_1671 2051237 - 2051890 + | phosphate uptake regulator, PhoU TERM 2348 2051874 - 2051917 + T 100 -23 -3.14745 | opp_overlap 2051878 2051883 2051887, overlap 2051878 2051887 TGATTACAGGTGAGT TAAAGGAAATAAATTAGAGG CATG CCTCTAATTTATTTCCTTTA TATATGTTATAAGAG TERM 2349 2051878 - 2051913 + T 100 -19.4 -4.22949 | opp_overlap 2051878 2051883 2051887, overlap 2051874 2051887 TACAGGTGAGTTAAA GGAAATAAATTAGAGG CATG CCTCTAATTTATTTCC TTTATATATGTTATA TERM 2350 2051913 - 2051878 - T 100 -19.4 -3.66378 | opp_overlap 2051878 2051874 2051887, overlap 2051883 2051887 TACAGGTGAGTTAAA GGAAATAAATTAGAGG CATG CCTCTAATTTATTTCC TTTATATATGTTATA TERM 2351 2051908 - 2051883 - T 100 -12.1 -4.08485 | opp_overlap 2051878 2051874 2051887, overlap 2051878 2051887 GTGAGTTAAAGGAAA TAAATTAGAGG CATG CCTCTAATTTA TTTCCTTTATATATG TERM 2352 2051904 - 2051887 - T 89 -8.5 -4.62772 | opp_overlap 2051878 2051874 2051887, overlap 2051883 2051878 GTTAAAGGAAATAAA TTAGAGG CATG CCTCTAA TTTATTTCCTTTATA TERM 2353 2051887 - 2051904 + T 89 -8.5 -4.65182 | opp_overlap 2051887 2051883 2051878, overlap 2051878 2051874 GTTAAAGGAAATAAA TTAGAGG CATG CCTCTAA TTTATTTCCTTTATA TERM 2354 2051987 - 2051952 - T 100 -11.2 -4.68593 | gap 1, opp_overlap 2051952 2051954, overlap 2051954 GTCATTAGTTAAAAA TATGCCGCCAAGGAACC ACT GGGTC-TTGGCGGCATG TTTGTTGTATACTAA TERM 2355 2051952 - 2051987 + T 100 -13.4 -4.41114 | gap 1, opp_overlap 2051952 2051954, overlap 2051954 GTCATTAGTTAAAAA TATGCCGCCAAGGAACC ACT GGGTC-TTGGCGGCATG TTTGTTGTATACTAA TERM 2356 2051985 - 2051954 - T 100 -13.8 -3.95883 | gap 1, opp_overlap 2051952 2051954, overlap 2051952 CATTAGTTAAAAATA TGCCGCCAAGGAACC ACT GGGTC-TTGGCGGCA TGTTTGTTGTATACT TERM 2357 2051954 - 2051985 + T 100 -13.8 -3.80466 | gap 1, opp_overlap 2051954 2051952, overlap 2051952 CATTAGTTAAAAATA TGCCGCCAAGGAACC ACT GGGTC-TTGGCGGCA TGTTTGTTGTATACT Cphy_1672 2052590 - 2052087 - | hypothetical protein TERM 2358 2052260 - 2052276 + g 73 -6.5 -4.19276 | overlap 2052256 ATATATAATCTTTGG GCACCAA TAC TTGGGGC TTTTCACCGTTTTCG TERM 2359 2052639 - 2052667 + r 81 -9 -3.83864 | opp_overlap 2052639, overlap 2052663 TAATATAAATGTAAA TACCCAAGAAAT AATAA ATTCCTTGGGTA TTATTGTGCCCTTTT TERM 2360 2052667 - 2052639 - R 90 -11.2 -3.93009 | opp_overlap 2052639 2052663 TAATATAAATGTAAA TACCCAAGAAAT AATAA ATTCCTTGGGTA TTATTGTGCCCTTTT TERM 2361 2052737 - 2052699 - R 71 -7.5 -3.5486 | gap 1, opp_overlap 2052706 2052707, overlap 2052701 2052702 2052706 TAGGTGAATGAAAGA CACGGAA-CGCCAGCCAC AAAA GTGACTGGCATTTCAATG AAACAATAGTCTTTA TERM 2362 2052734 - 2052701 - R 83 -10.3 -3.34468 | opp_overlap 2052706 2052707, overlap 2052699 2052702 2052706 GGTGAATGAAAGACA CGGAACGCCAGCCAC AAAA GTGACTGGCATTTCA ATGAAACAATAGTCT TERM 2363 2052733 - 2052702 - R 86 -11.6 -2.60199 | opp_overlap 2052706 2052707, overlap 2052701 2052699 2052706 GTGAATGAAAGACAC GGAACGCCAGCCAC AAAA GTGACTGGCATTTC AATGAAACAATAGTC TERM 2364 2052729 - 2052706 - R 85 -11 -3.22274 | opp_overlap 2052706 2052707, overlap 2052702 2052701 2052699 ATGAAAGACACGGAA CGCCAGCCAC AAAA GTGACTGGCA TTTCAATGAAACAAT TERM 2365 2052707 - 2052728 + r 77 -10.1 -2.78679 | opp_overlap 2052706 2052702 2052701 2052699, overlap 2052706 TGAAAGACACGGAAC GCCAGCCAC AAAA GTGACTGGC ATTTCAATGAAACAA Cphy_1673 2053758 - 2052787 - | excinuclease ABC subunit C Cphy_1674 2055077 - 2054043 - | redoxin domain-containing protein Cphy_1675 2055943 - 2055095 - | 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein TERM 2366 2055503 - 2055488 - G 74 -4.6 -4.99638 | ATACTTACAGAAAAA CGGAAC CGTG GATCCG TAGGAATCTGCTGCC TERM 2367 2056244 - 2056260 + H 71 -8.1 -3.21772 | opp_overlap 2056247, overlap 2056247 AGCTATCAACGAACG TAAGGTA AAC TACCTTA TCTTCTACGAAGGTT TERM 2368 2056261 - 2056273 + H 77 -4.1 -5.41143 | overlap 2056262 AGGTAAACTACCTTA TCTTC TAC GAAGG TTTTTTTACCGCATA TERM 2369 2056384 - 2056363 - H 74 -7.4 -4.07687 | opp_overlap 2056354 ATGTCCTCCTTAAAA CCTTACAA AATCTG TTGTAAGG TTAAGGATGTCTCCT TERM 2370 2057129 - 2057107 - g 72 -7.7 -3.745 | overlap 2057105 TGAGGTACGAAAAGA CGGCCAACT AATTG AGCTGACCG TGAAAGAGTTTGAAT TERM 2371 2057266 - 2057237 - g 73 -9.3 -2.90763 | overlap 2057256 TTCACAGGCGAGACA CGGACGCTTGATA CACA TATCCAGCGTCTG CGGAAAAAGTTGGAA Cphy_1676 2056682 - 2057341 + | two component transcriptional regulator Cphy_1677 2057338 - 2058771 + | integral membrane sensor signal transduction histidine kinase TERM 2372 2059131 - 2059144 + G 74 -3.8 -5.12068 | TCGAGAGTGATTTCA CGCA GACAAA TGCG TTTTTATTCGATGTA Cphy_1678 2058755 - 2059531 + | hypothetical protein TERM 2373 2059567 - 2059607 + F 95 -9.2 -4.9725 | opp_overlap 2059567, overlap 2059559 2059568 GACAACTGCGAGACA TCTCCCTGTTATGATTTG AAGCG TAAATTTTAACAGGGAGG TTTTTATATAAAAAT TERM 2374 2059568 - 2059606 + F 87 -10.5 -3.57627 | opp_overlap 2059567, overlap 2059559 2059567 ACAACTGCGAGACAT CTCCCTGTTATGATTTG AAGCG TAAATTTTAACAGGGAG GTTTTTATATAAAAA TERM 2375 2059946 - 2059965 + G 74 -7.9 -3.85184 | overlap 2059938 TATATTGTATTTACA GCTTCCA ATGGAG TGGAAGC TTTGGATATTTTAGA Cphy_1679 2059856 - 2060530 + | two component transcriptional regulator Cphy_1680 2060527 - 2061597 + | integral membrane sensor signal transduction histidine kinase TERM 2376 2061609 - 2061634 + F 95 -5.5 -6.08563 | ATAATAGATAGATTA GAGTAATTGTT CTGG GACAGTTGCTC TTTTTTTTATGTGTT TERM 2377 2062704 - 2062688 - g 71 -5.1 -4.62984 | GTATTAGATACAAAA CCAACTA TTG TAGATGG ACAGATTATGTCTTC TERM 2378 2063095 - 2063080 - g 70 -9 -2.98223 | opp_overlap 2063090 TACTGATATTATAGA GGCAGT TAGT ACTGCC CAAGCAGCTGAATTT TERM 2379 2063140 - 2063130 - g 73 -5.4 -4.71463 | opp_overlap 2063130 AAGCAAAAGAAGAAA GCTA TGA TAGC TTTGTAGCGCAAGGT Cphy_1681 2061728 - 2063485 + | ABC transporter related Cphy_1682 2063482 - 2065323 + | ABC transporter related TERM 2380 2065372 - 2065347 - f 80 -10.6 -2.74292 | opp_overlap 2065347, overlap 2065344 TAAATAATTATATGA TGCACTCATT TAAGTT AATGAGTGCA TTTTGCTGTTGTAAT TERM 2381 2065347 - 2065372 + F 95 -10.6 -4.47259 | opp_overlap 2065347 2065344 TAAATAATTATATGA TGCACTCATT TAAGTT AATGAGTGCA TTTTGCTGTTGTAAT Cphy_1683 2065548 - 2066213 + | AraC family transcriptional regulator Cphy_1684 2067711 - 2066377 - | SufS subfamily cysteine desulfurase Cphy_1685 2068645 - 2067701 - | hypothetical protein TERM 2382 2068905 - 2068857 - R 77 -3.9 -5.40279 | overlap 2068858 TAAAAGAAAATAAAA GCCACAATTTACCTGACAGGAGT GTA AATGACATCAGGCAAATTGTGGT TGAAATTAAGGGAAA TERM 2383 2068904 - 2068858 - R 72 -7.4 -3.80507 | overlap 2068857 AAAAGAAAATAAAAG CCACAATTTACCTGACAGGAGT GTA AATGACATCAGGCAAATTGTGG TTGAAATTAAGGGAA Cphy_1686 2070048 - 2068969 - | hypothetical protein TERM 2384 2069559 - 2069581 + g 70 -3.4 -5.05782 | opp_overlap 2069559 TACCGTTATAATTGA TGACAATGCA TGT TGGATTGGCA TTTTTTGAACTCAAT TERM 2385 2070188 - 2070206 + H 74 -6.6 -4.1891 | opp_overlap 2070186 2070188 AGGGGTAGAGCAAGA CCATCAGC TAT GCCGGTGG TTTCTATTGAACCGC TERM 2386 2070250 - 2070283 + H 80 -9 -3.60505 | gap 1, opp_overlap 2070255, overlap 2070248 2070252 GCATGAGTGGTGTGA G-AGGAGGTAGCTGA AATAA TCAACTACCTCCTAC TATTTATAATGTGAT TERM 2387 2070252 - 2070280 + H 88 -11.8 -2.91656 | opp_overlap 2070255, overlap 2070250 2070248 ATGAGTGGTGTGAGA GGAGGTAGCTGA AATAA TCAACTACCTCC TACTATTTATAATGT TERM 2388 2070412 - 2070432 + H 77 -9.9 -2.69246 | opp_overlap 2070410 2070409 GTAACGAAAGAACTT GCATAAAAT TAC ATTTTATGC TAATATAAATTTGTA TERM 2389 2071363 - 2071347 - g 75 -9.5 -3.20747 | opp_overlap 2071344, overlap 2071338 ACCAAAGCCTACGAA GATAAGG CTT CCTTATC TCGAGAGCAACTCAA Cphy_1687 2070592 - 2071602 + | polysaccharide deacetylase TERM 2390 2071643 - 2071621 - f 93 -9 -4.87786 | opp_overlap 2071621 GTAATGGCATAAAAA GCCGCCTGTT TAA AGCGGGCGGC TTTTTATCTACAATT TERM 2391 2071621 - 2071643 + F 100 -13.4 -4.98522 | opp_overlap 2071621 GTAATGGCATAAAAA GCCGCCTGTT TAA AGCGGGCGGC TTTTTATCTACAATT TERM 2392 2073384 - 2073409 + G 75 -5.4 -4.8622 | opp_overlap 2073384 CAGGGGCACAACAAT CTTCGCCG GAACCTATGG CGGCGGAG TTTTTCATTCCACCA Cphy_1688 2071762 - 2073555 + | two component regulator propeller domain-containing protein TERM 2393 2073565 - 2073592 + F 70 -6.4 -4.30014 | gap 1, overlap 2073558 AATTGAGTCTCCAGA GGAAGAAAGAGAT AAA AGC-CTTTCTTCC TTTTGGGTTAGTAAA Cphy_1689 2074008 - 2075246 + | sodium/hydrogen exchanger Cphy_1690 2075282 - 2075632 + | hypothetical protein TERM 2394 2076090 - 2076110 + G 77 -8.3 -3.86015 | opp_overlap 2076094, overlap 2076094 CCGGCCCTTCGCTAT CAGATGCAG ATG CTGCGTTTG TTTCTGAAAGAAATA TERM 2395 2076094 - 2076106 + G 73 -5.5 -4.55295 | opp_overlap 2076094, overlap 2076090 CCCTTCGCTATCAGA TGCAG ATG CTGCG TTTGTTTCTGAAAGA Cphy_1691 2075841 - 2076455 + | hypothetical protein Cphy_1692 2076631 - 2076984 + | AraC family transcriptional regulator Cphy_1693 2077186 - 2077641 + | hypothetical protein TERM 2396 2078017 - 2077983 - T 100 -13.8 -4.84311 | opp_overlap 2077978 2077975 GTTTATATAATAAAA CTCTGGTCCATAAG AATAAAA CTTATAGACCAGAG TTGAAATATTATATC Cphy_1694 2081500 - 2078054 - | triple helix repeat-containing collagen TERM 2397 2081034 - 2081046 + g 73 -9.1 -3.41125 | overlap 2081036 GTATCACCTGTTGGA CCGGT AGC ACCGG TTGTCCCTGTGTCGC TERM 2398 2081527 - 2081544 + r 79 -7.1 -4.38927 | CGCTCGTATAATTTT TTAGACA ATAT TGTCTAA TTTATTATATGAAGA Cphy_1695 2082656 - 2081574 - | glycosyl transferase family protein TERM 2399 2082217 - 2082243 + g 85 -3 -5.9362 | overlap 2082220 2082221 CTAAGTTCAACGTAT TCGTGTATGGGA TCA TTCCATACGTAA TTTTTTTCTCTTTTA Cphy_1696 2082909 - 2083400 + | MarR family transcriptional regulator TERM 2400 2083421 - 2083437 + F 100 -12.3 -4.3739 | opp_overlap 2083412 CAAAGATTAGAGAGT GCGAACC AAA GGTTCGC TTTTCTAAAAAAATA Cphy_1697 2083585 - 2084766 + | arsenite-activated ATPase ArsA Cphy_1698 2084993 - 2086150 + | arsenite-transporting ATPase Cphy_1699 2086195 - 2087451 + | phosphopantetheine-binding TERM 2401 2087673 - 2087649 - f 74 -5.7 -4.58773 | TTCACCAAATCAAAA CGTCAATATCG ATA CAATTCTGACG AGCCGGAAAGTCCAG TERM 2402 2087676 - 2087707 + F 100 -11 -4.64144 | gap 1, opp_overlap 2087683, overlap 2087683 TACAATTCTGACGAG CCGGAAA-GTCCAGT GAT ACTGGGCTTTTTCGG TTTTTAGGGATTATT TERM 2403 2087683 - 2087699 + F 93 -8.7 -4.92239 | opp_overlap 2087683, overlap 2087676 CTGACGAGCCGGAAA GTCCAGT GAT ACTGGGC TTTTTCGGTTTTTAG Cphy_1700 2087735 - 2087974 + | non-haem haloperoxidase family protein Cphy_1701 2088395 - 2088021 - | SufS subfamily cysteine desulfurase Cphy_1702 2088520 - 2088404 - | hypothetical protein Cphy_1703 2089852 - 2088779 - | hypothetical protein TERM 2404 2090075 - 2090030 - R 84 -11.1 -3.002 | opp_overlap 2090030 2090031 2090034, overlap 2090016 2090033 ACGACCGCATACATA GCAGGAGGCCGCTTATTCTCC AAAA GAAGAATGAGCGGCCACATGT TTTTTAAAAAACCAC TERM 2405 2090031 - 2090074 + r 100 -14.6 -5.00616 | opp_overlap 2090016 2090030 2090033, overlap 2090030 2090034 CGACCGCATACATAG CAGGAGGCCGCTTATTCTCC AAAA GAAGAATGAGCGGCCACATG TTTTTTAAAAAACCA TERM 2406 2090072 - 2090033 - R 86 -11.4 -2.72977 | opp_overlap 2090030 2090031 2090034, overlap 2090016 2090030 ACCGCATACATAGCA GGAGGCCGCTTATTCTCC AAAA GAAGAATGAGCGGCCACA TGTTTTTTAAAAAAC TERM 2407 2090034 - 2090071 + r 100 -14.9 -3.07655 | opp_overlap 2090016 2090033 2090030, overlap 2090030 2090031 CCGCATACATAGCAG GAGGCCGCTTATTCTCC AAAA GAAGAATGAGCGGCCAC ATGTTTTTTAAAAAA Cphy_1704 2091248 - 2090169 - | hypothetical protein TERM 2408 2090819 - 2090832 + g 73 -6.7 -4.26076 | TGGAGTCAATGATTT CGGTA AGCC TACCG TTTTCATCCACCTGA TERM 2409 2091528 - 2091583 + H 76 -8.6 -3.41602 | gap 1, opp_overlap 2091528 2091533, overlap 2091533 AAAAAATATAGAAAC TAAAAGAGGCTAAGTTTTTAGGTCGAT TTC AATGAC-TATAGACTTAGCCTCTTTTC TTATGCTAAAATACA TERM 2410 2091533 - 2091578 + H 93 -8.5 -4.81212 | gap 1, opp_overlap 2091528 2091533, overlap 2091528 ATATAGAAACTAAAA GAGGCTAAGTTTTTAGGTCGAT TTC AATGAC-TATAGACTTAGCCTC TTTTCTTATGCTAAA Cphy_1705 2091851 - 2092915 + | hypothetical protein Cphy_1706 2092890 - 2095226 + | AraC family transcriptional regulator TERM 2411 2095401 - 2095369 - f 73 -7.7 -3.67067 | opp_overlap 2095369, overlap 2095367 CATTATACATAAATA GGGAAACTGTCAACA AAA TGTTGGTGGTTTCCC TTTTCACTTTGCTAC TERM 2412 2095369 - 2095401 + F 100 -14.3 -4.37711 | opp_overlap 2095367 2095369 CATTATACATAAATA GGGAAACTGTCAACA AAA TGTTGGTGGTTTCCC TTTTCACTTTGCTAC Cphy_1707 2095571 - 2097463 + | hypothetical protein TERM 2413 2097628 - 2097616 - f 79 -4.9 -5.19879 | TGGGAAAGAGAAAAA GATAA GTA TTATC TAGAAGGACGAATAC TERM 2414 2098643 - 2098624 - g 76 -6.4 -4.47328 | overlap 2098626 AACTGGAGTAGAAAA GATGCCAA GCTA TTGGCAGC CTTGGGGTGGAGAGA TERM 2415 2098641 - 2098626 - g 74 -7.6 -3.84183 | overlap 2098624 CTGGAGTAGAAAAGA TGCCAA GCTA TTGGCA GCCTTGGGGTGGAGA Cphy_1708 2097665 - 2099221 + | extracellular solute-binding protein TERM 2416 2099239 - 2099278 + F 76 -9.6 -2.98823 | opp_overlap 2099239, overlap 2099241 2099243 TTAGGTGGTAAAGAA GATAGTATTACTTTAGAT ACAT AATTAGAGTAATACTATC TGTCTATAGGCAAGA Cphy_1709 2099418 - 2100341 + | binding-protein-dependent transport systems inner membrane component TERM 2417 2100335 - 2100316 - f 91 -3.6 -6.22691 | gap 1, opp_overlap 2100320, overlap 2100321 GAATAATAAAAAAAA TAGATGCTG ATG CAGC-CCTA TTATAGTGGTTAGGA Cphy_1710 2100360 - 2101262 + | binding-protein-dependent transport systems inner membrane component TERM 2418 2101988 - 2102008 + G 71 -4.7 -4.65916 | opp_overlap 2101993 CAATCGACAGATTTT TAATAGAGC AAA GCCCTATTG TTTTATTAGGATACG Cphy_1711 2101420 - 2103282 + | endopygalactorunase-like protein Cphy_1712 2103332 - 2104336 + | esterase/lipase-like protein TERM 2419 2104444 - 2104387 - T 83 -10.3 -3.35586 | gap 1, opp_overlap 2104391, overlap 2104389 2104391 2104405 TTAAATGAAATTGAA TATATAGACCCTATAAAA-GAACCATAT CTA AAATAGTTCATTTTATAGGGTCTATTTT CATTTGCTCCTTTTA TERM 2420 2104442 - 2104389 - T 100 -12.9 -3.23481 | gap 1, opp_overlap 2104391, overlap 2104387 2104391 2104405 AAATGAAATTGAATA TATAGACCCTATAAAA-GAACCATAT CTA AAATAGTTCATTTTATAGGGTCTATT TTCATTTGCTCCTTT TERM 2421 2104440 - 2104391 - T 100 -15.5 -3.16619 | gap 1, opp_overlap 2104391, overlap 2104389 2104387 2104405 ATGAAATTGAATATA TAGACCCTATAAAA-GAACCATAT CTA AAATAGTTCATTTTATAGGGTCTA TTTTCATTTGCTCCT TERM 2422 2104391 - 2104440 + T 100 -13.3 -4.59376 | gap 1, opp_overlap 2104391 2104389 2104387 2104405 ATGAAATTGAATATA TAGACCCTATAAAA-GAACCATAT CTA AAATAGTTCATTTTATAGGGTCTA TTTTCATTTGCTCCT Cphy_1713 2105900 - 2104536 - | coagulation factor 5/8 type domain-containing protein TERM 2423 2105928 - 2105952 + H 72 -5.8 -4.50988 | overlap 2105925 CTTTATACTTTTTTA GAAGAGTC TGAAGTTAC GACTCTTC TTATTTTTAGTATAG TERM 2424 2108886 - 2108865 - g 71 -4.5 -4.75174 | CATTGAAGTTAAAAA CAATGCTTC GGCT GAAACATTA GACGCATTTAAGCCA Cphy_1714 2106148 - 2109003 + | glycoside hydrolase family protein TERM 2425 2109014 - 2109051 + F 91 -7.2 -5.31275 | gap 1, opp_overlap 2109014 AATAAACCTTTAAAA CTGTCTTTATCTACAGC GTTTA GCTA-AGATAAAGGCAG TTTTTTATAATGAAA TERM 2426 2109051 - 2109014 - f 76 -7.2 -4.18763 | gap 1, opp_overlap 2109014 AATAAACCTTTAAAA CTGTCTTTATCTACAGC GTTTA GCTA-AGATAAAGGCAG TTTTTTATAATGAAA TERM 2427 2109624 - 2109642 + G 76 -7.6 -4.09739 | opp_overlap 2109627, overlap 2109622 2109627 CGAAACAGTAGGATT TAAGAATT TTA AATTCTTA TTTTCCAGCGGTTCA Cphy_1715 2109418 - 2110368 + | binding-protein-dependent transport systems inner membrane component Cphy_1716 2110380 - 2111312 + | binding-protein-dependent transport systems inner membrane component Cphy_1717 2111371 - 2112876 + | extracellular solute-binding protein TERM 2428 2112964 - 2112997 + F 95 -10.5 -4.28361 | opp_overlap 2112964 TTAATAAAAAGATAA GTATCCTTGTATGAG ATAT TTTGTACAAGGATAC TTTTACTGCAATTAA TERM 2429 2113117 - 2113103 - f 76 -6.4 -4.66833 | GCGCAAGCGGAAAAA CTTGCC TGT AGCAAG GGGAATACCCGCTTT Cphy_1718 2113177 - 2114133 + | glycosidase PH1107-related Cphy_1719 2114171 - 2115454 + | hypothetical protein Cphy_1720 2115625 - 2118756 + | glycoside hydrolase family protein TERM 2430 2118830 - 2118792 - f 100 -14.8 -2.97613 | opp_overlap 2118796 2118804, overlap 2118804 TATGAATTAAGTATA GTTACGCAAAAAGAGAGT ATT ACTCTCTTTTTGCGTATA ATCATAACAAGTGGA TERM 2431 2118796 - 2118826 + F 100 -20 -2.82516 | opp_overlap 2118792 2118804, overlap 2118804 AATTAAGTATAGTTA CGCAAAAAGAGAGT ATT ACTCTCTTTTTGCG TATAATCATAACAAG TERM 2432 2118804 - 2118818 + F 89 -8.6 -4.7173 | opp_overlap 2118804 2118792, overlap 2118796 ATAGTTACGCAAAAA GAGAGT ATT ACTCTC TTTTTGCGTATAATC TERM 2433 2118818 - 2118804 - f 89 -8.6 -4.67755 | opp_overlap 2118796 2118804, overlap 2118792 ATAGTTACGCAAAAA GAGAGT ATT ACTCTC TTTTTGCGTATAATC TERM 2434 2118842 - 2118861 + F 80 -6.4 -4.88918 | opp_overlap 2118842 2118841 TATAATCATAACAAG TGGAGCAG TAGA CTGGTCCA TTTTGTTTACAGTAA Cphy_1721 2118995 - 2120716 + | histidine kinase internal region Cphy_1722 2120709 - 2122235 + | two component AraC family transcriptional regulator TERM 2435 2122664 - 2122677 + G 78 -3.8 -5.37345 | opp_overlap 2122664 2122667, overlap 2122667 GATTTTTCACAGAAT GCAC AAAAAG GTGC TTTTTTGTCGTTGGA Cphy_1723 2122313 - 2123833 + | extracellular solute-binding protein Cphy_1724 2123969 - 2125384 + | multi anti extrusion protein MatE Cphy_1725 2125527 - 2125907 + | hypothetical protein TERM 2436 2126035 - 2125998 - f 71 -8.1 -3.35962 | gap 1, opp_overlap 2126002, overlap 2125995 TTGATATAAAAAGCA GAAAGTTATACTAT-TAT AGT ATAGATAGTATCACTTTC ACACAACGAAAAGTG Cphy_1726 2126093 - 2127109 + | hypothetical protein Cphy_1727 2127262 - 2127525 + | hypothetical protein TERM 2437 2127724 - 2127758 + F 80 -7.2 -4.61353 | opp_overlap 2127722 2127724, overlap 2127722 GATAAAATATAAATA GTTCGCTCTAAGCT AAACAAA AGCTTAAGGCGGAC TTATTTTTATATATA Cphy_1728 2127956 - 2128729 + | Ku protein TERM 2438 2128815 - 2128804 - g 71 -4.4 -4.86621 | AGCCGGAAGGAAAAA CAGA AGAT TCTG AAGAAAGTCTAAGAT TERM 2439 2130530 - 2130512 - g 84 -10.2 -3.79113 | opp_overlap 2130515, overlap 2130498 ATGCTTTTATAAGAA GCATCCCG GTG CGGGAAGC AAAGGGATTATTACA Cphy_1729 2128734 - 2131175 + | DNA ligase D TERM 2440 2131225 - 2131260 + F 100 -13.6 -5.2696 | opp_overlap 2131224 2131229 TTATACAGGATAATT CAAAGGCATCAAGATA GCAA TATTTTGATGTCTTTG TTTTTTGACTTTTCG TERM 2441 2131734 - 2131745 + G 73 -2.2 -5.29445 | TGGTCTTTGTTGAGA TTGC GGTA GCGA TTTTTGTTATTACAA TERM 2442 2132336 - 2132312 - g 78 -10.7 -3.01712 | opp_overlap 2132309 2132312 2132333 2132335 TTTCTGCTTTCAATA GCCGCACTGAC TAA GTCAGCACAGC TACCTTTCTCAAGTT TERM 2443 2132377 - 2132428 + G 75 -9.6 -3.2059 | gap 1, overlap 2132375 TGCCATGGTTGCTCC TACACCTTCTTCCGCC-TTATTGCA TTC TGCAACAATGGTGAAGGCAGGTGTA TATCTTGTCATCCGT TERM 2444 2132992 - 2133011 + G 70 -2.8 -5.07486 | overlap 2132994 GAAGCATGAGTTTAG TTTGGATG AGCA CATCCCGA TTTTTATTCAGGCTG Cphy_1730 2131517 - 2133430 + | NADH dehydrogenase (quinone) Cphy_1731 2133430 - 2134290 + | respiratory-chain NADH dehydrogenase subunit 1 Cphy_1732 2134384 - 2134818 + | NADH ubiquinone oxidoreductase 20 kDa subunit TERM 2445 2135187 - 2135200 + G 72 -8.1 -3.53091 | opp_overlap 2135186 2135184 2135187 ATTTTTATACAATAC CGGTG GAGA CACCG TTTAAGAAGGCAGGT Cphy_1733 2134871 - 2135224 + | ech hydrogenase, subunit EchD, putative TERM 2446 2135655 - 2135674 + G 70 -8.6 -2.98223 | opp_overlap 2135649 2135648 TGAGGAAACCACAGG CGGAAGAG TTAT CTTTTCCG TATGTGATGTGGGTG Cphy_1734 2135224 - 2136303 + | NADH-ubiquinone oxidoreductase chain 49kDa TERM 2447 2136309 - 2136297 - f 73 -9.1 -2.88861 | TATCAGCTGTACAGA GCGCT AAG AGCGC AGCGTGAAAATGATA Cphy_1735 2136423 - 2136785 + | 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein Cphy_1736 2136755 - 2137093 + | hydrogenase expression/synthesis HypA Cphy_1737 2137135 - 2137785 + | hydrogenase accessory protein HypB TERM 2448 2137818 - 2137842 + G 100 -16.5 -4.46073 | GTATATGGAATGGTG CAAGGGGTTGG TTT CCGACCCCTTG TTTATTATATTGCAA Cphy_1738 2137812 - 2140190 + | (NiFe) hydrogenase maturation protein HypF Cphy_1739 2140251 - 2140478 + | hydrogenase assembly chaperone hypC/hupF Cphy_1740 2140465 - 2141511 + | hydrogenase formation HypD protein Cphy_1741 2141595 - 2142572 + | hydrogenase expression/formation protein HypE Cphy_1742 2144422 - 2142860 - | transcriptional regulator, CdaR TERM 2449 2144471 - 2144457 - H 72 -5.8 -4.3898 | opp_overlap 2144447 ATGATCTGTATAAAA TATAGT TTT ACTATA GTGCACGATAAACAA TERM 2450 2145427 - 2145415 - g 74 -7.7 -3.86202 | opp_overlap 2145415 GCGGATTATATGAAA CAGGT ATG ACCTG TATTGAACCTATTTC TERM 2451 2146613 - 2146593 - g 73 -5.5 -4.67353 | TTATTTACGGAAAAA CAAAAAGCT CCA AGCTTTCTA ACGTCCAAAGAGGAA TERM 2452 2147092 - 2147076 - g 75 -9.5 -3.14132 | GCTGCTCTCTATCAA TTACCTG CAG CAGGTAA GCAGACATTTGGAGG Cphy_1743 2144616 - 2147429 + | NADH:flavin oxidoreductase/NADH oxidase Cphy_1744 2147485 - 2148261 + | short-chain dehydrogenase/reductase SDR TERM 2453 2148374 - 2148348 - f 79 -7.2 -4.37013 | opp_overlap 2148348 2148369 AATTAATGATTAAAA GTGCCCGGAACC TTT GATTCTGGGTAC TTTTTTGCCCGTTTT TERM 2454 2148348 - 2148374 + F 100 -9.4 -5.08011 | opp_overlap 2148348, overlap 2148369 AATTAATGATTAAAA GTGCCCGGAACC TTT GATTCTGGGTAC TTTTTTGCCCGTTTT Cphy_1745 2148570 - 2149625 + | methylated-DNA--protein-cysteine methyltransferase Cphy_1746 2149901 - 2150887 + | 3-carboxymuconate cyclase-like protein TERM 2455 2150911 - 2150943 + F 100 -12.2 -4.11304 | opp_overlap 2150915, overlap 2150915 AGAGTAGATATAAGA TAAAGGAAGTGGCA ATATG TGTCACTTCCTTTG TTGTTTATAAGTTGA TERM 2456 2150915 - 2150939 + F 100 -10.8 -4.63048 | opp_overlap 2150915, overlap 2150911 TAGATATAAGATAAA GGAAGTGGCA ATATG TGTCACTTCC TTTGTTGTTTATAAG TERM 2457 2150939 - 2150915 - f 87 -8.6 -4.3277 | opp_overlap 2150915 2150911 TAGATATAAGATAAA GGAAGTGGCA ATATG TGTCACTTCC TTTGTTGTTTATAAG Cphy_1747 2151434 - 2156131 + | peptidase S8 and S53 subtilisin kexin sedolisin TERM 2458 2156488 - 2156474 - g 70 -2.8 -5.0809 | AATAAATCAGAAAAA TCATCT ATC AGAAGA TAAGAAAGCAGAGCC Cphy_1748 2156301 - 2156885 + | hypothetical protein TERM 2459 2156904 - 2156943 + T 95 -10.3 -4.23674 | gap 1, opp_overlap 2156911, overlap 2156908 TTAATAAATGATAGT TTAATAAGGGAAGTGACA ATATA TGTCACTTCCCT-AGTAA TTTATGTTACTGAAA TERM 2460 2156908 - 2156940 + T 87 -11.4 -3.12253 | opp_overlap 2156911, overlap 2156904 TAAATGATAGTTTAA TAAGGGAAGTGACA ATATA TGTCACTTCCCTAG TAATTTATGTTACTG TERM 2461 2156937 - 2156911 - T 100 -15.3 -3.67112 | opp_overlap 2156908 2156904 ATGATAGTTTAATAA GGGAAGTGACA ATATA TGTCACTTCCC TAGTAATTTATGTTA TERM 2462 2157023 - 2157055 + T 100 -17.1 -2.57092 | opp_overlap 2157023, overlap 2157019 2157031 CGCTAACCAAGAAAA TGGGGAAAGGGGCGG ATA TTGCTCCTTTCCCCA TACCTTAATGGAGTT TERM 2463 2157055 - 2157023 - T 100 -13.5 -4.78572 | opp_overlap 2157019 2157023 2157031 CGCTAACCAAGAAAA TGGGGAAAGGGGC GGATATT GCTCCTTTCCCCA TACCTTAATGGAGTT Cphy_1749 2157615 - 2157079 - | hypothetical protein Cphy_1750 2158070 - 2159029 + | glycosy hydrolase family protein TERM 2464 2159196 - 2159168 - f 81 -8.9 -3.81672 | opp_overlap 2159173, overlap 2159173 AATAGATAAAAGCAA TAAAACACGCCCA GCT CGGACGTGTTTTT CTTATACTAAATAAT TERM 2465 2159173 - 2159191 + F 83 -5.9 -5.22006 | opp_overlap 2159168 2159173 ATAAAAGCAATAAAA CACGCCC AGCTC GGACGTG TTTTTCTTATACTAA TERM 2466 2159191 - 2159173 - f 93 -8.8 -4.90918 | opp_overlap 2159173, overlap 2159168 ATAAAAGCAATAAAA CACGCCCA GCT CGGACGTG TTTTTCTTATACTAA Cphy_1751 2159506 - 2160132 + | NADPH-dependent FMN reductase Cphy_1752 2160241 - 2161086 + | 2,5-didehydrogluconate reductase TERM 2467 2161158 - 2161198 + T 73 -8.4 -3.41013 | opp_overlap 2161155 2161158, overlap 2161161 2161163 GAATAGGAAGAACAT GAATTGAGTGCATTTCTT GAACA AGGGATTGCACTCTATTC TTGTCAATATGATTA Cphy_1753 2162033 - 2161296 - | aminotransferase class V Cphy_1754 2162371 - 2162021 - | putative aminotransferase Cphy_1755 2162543 - 2162995 + | MarR family transcriptional regulator Cphy_1756 2162992 - 2163567 + | cyclase family protein TERM 2468 2163701 - 2163739 + T 100 -14.1 -3.70076 | gap 1, opp_overlap 2163703 2163707, overlap 2163703 2163707 GGATGATGAAACGTA AACAAACTGAGGCC-CTT TGAG AAGTGGCCTCAGTTTGTG TTTGCGTGCATTTGC TERM 2469 2163703 - 2163737 + T 100 -16.7 -3.42684 | gap 1, opp_overlap 2163703 2163707, overlap 2163701 2163707 ATGATGAAACGTAAA CAAACTGAGGCC-CTT TGAG AAGTGGCCTCAGTTTG TGTTTGCGTGCATTT TERM 2470 2163737 - 2163703 - T 100 -16.7 -3.87551 | gap 1, opp_overlap 2163703 2163701 2163707, overlap 2163707 ATGATGAAACGTAAA CAAACTGAGGCC-CTT TGAG AAGTGGCCTCAGTTTG TGTTTGCGTGCATTT TERM 2471 2163733 - 2163707 - T 100 -11.7 -4.53439 | gap 1, opp_overlap 2163707 2163703 2163701, overlap 2163703 TGAAACGTAAACAAA CTGAGGCC-CTT TGAG AAGTGGCCTCAG TTTGTGTTTGCGTGC TERM 2472 2163707 - 2163733 + T 100 -11.7 -4.35044 | gap 1, opp_overlap 2163703 2163707, overlap 2163703 2163701 TGAAACGTAAACAAA CTGAGGCC-CTT TGAG AAGTGGCCTCAG TTTGTGTTTGCGTGC Cphy_1757 2164755 - 2163877 - | LysR family transcriptional regulator Cphy_1758 2164874 - 2166220 + | sodium:neurotransmitter symporter TERM 2473 2166337 - 2166367 + T 80 -7.6 -4.18018 | ATATAATCAGTTTAA GCCCTTGAGTAT ATGTATA ATACCCGAGGGC TTTTGCATCAAGAAA Cphy_1759 2167096 - 2166419 - | hydrolase TERM 2474 2166897 - 2166884 - G 74 -3.7 -5.1361 | opp_overlap 2166884 ATAAAGTTTAAAAAA CTCGC TGAA GCGCG TATTGAGAACAATTT Cphy_1760 2167738 - 2167112 - | membrane spanning protein TERM 2475 2167574 - 2167556 - G 84 -3.2 -5.62045 | overlap 2167559 ATAGAGAATAAAAAA TAACATAT TTA ATAAGTTA AGTATGGTCCCAATC TERM 2476 2168003 - 2168013 + G 78 -4 -5.42259 | AAAAACGGCAGGCGC TCAA TCC TTGA TTTTTTTGGAAGTAA Cphy_1761 2167838 - 2168455 + | cyclic nucleotide-binding protein Cphy_1762 2168688 - 2169272 + | TetR family transcriptional regulator Cphy_1763 2169265 - 2170761 + | FAD dependent oxidoreductase Cphy_1764 2170853 - 2171395 + | hypothetical protein Cphy_1765 2171662 - 2172333 + | isochorismatase hydrolase Cphy_1766 2172334 - 2172660 + | TfoX domain-containing protein TERM 2477 2172738 - 2172772 + T 83 -4.4 -5.58179 | gap 1, opp_overlap 2172733 2172738 AAAAGTTAAATAAAA GCAGTAGTCT-TGGA AGTGAA TCCATAGAGTGCTGC TTTTTTATTATAATA TERM 2478 2172857 - 2172875 + T 71 -7.6 -3.49076 | TTAATGTTACGCATT CTTTTTTT TAC AAAAAAAG TTAATTATCCATTTT Cphy_1767 2173201 - 2172848 - | hypothetical protein TERM 2479 2173981 - 2173993 + G 91 -6.3 -5.56673 | GGTTGCTGCGTTATC TGCAA TGA TTGCA TTTTTTGTTATGCAT Cphy_1768 2173688 - 2175943 + | PTS system, glucose subfamily, IIA subunit TERM 2480 2176230 - 2176220 - g 85 -2.6 -5.81412 | CCGACTCAAAAAAAA TATT TGG AATA ATGGGCCTTGGAATT Cphy_1769 2176081 - 2176338 + | phosphotransferase system, phosphocarrier protein HPr TERM 2481 2177454 - 2177443 - g 78 -5.8 -4.82756 | AGATAAGGAAGAAAA CCCA GCTA TGGG TTACCGGGCGATTCG Cphy_1770 2176394 - 2178028 + | phosphoenolpyruvate-protein phosphotransferase TERM 2482 2178072 - 2178103 + F 100 -6.7 -5.53991 | gap 1, opp_overlap 2178072 AGGAGATGAAAAAAA TGGTTCAGACTTCT TTTTT AGATG-CTGAACCA TTTTTTTCATGAGTC TERM 2483 2178103 - 2178072 - f 100 -6.7 -5.59357 | gap 1, opp_overlap 2178072 AGGAGATGAAAAAAA TGGTTCAGACTTCT TTTTT AGATG-CTGAACCA TTTTTTTCATGAGTC Cphy_1771 2178381 - 2178704 + | hypothetical protein TERM 2484 2179752 - 2179735 - T 100 -9.9 -4.77036 | GGTTAGGATTAAAAA GCTCAGA AGTA TCTGAGC GAGGAATAGCACCTG TERM 2485 2180268 - 2180228 - T 75 -8.3 -3.75571 | opp_overlap 2180232, overlap 2180232 TAATGTAGTAAAAGA TTAAGGGTGGATTATGCTA AGT TTGCATAGTCCACCCTTTG GAGCTGACATTTCAG TERM 2486 2180264 - 2180232 - T 100 -13.5 -3.55966 | opp_overlap 2180232, overlap 2180228 GTAGTAAAAGATTAA GGGTGGATTATGCTA AGT TTGCATAGTCCACCC TTTGGAGCTGACATT TERM 2487 2180232 - 2180264 + T 100 -15.7 -3.5764 | opp_overlap 2180232 2180228 GTAGTAAAAGATTAA GGGTGGATTATGCTA AGT TTGCATAGTCCACCC TTTGGAGCTGACATT Cphy_1774 2183319 - 2180350 - | hypothetical protein Cphy_1775 2189857 - 2183504 - | S-layer domain-containing protein TERM 2488 2185267 - 2185245 - G 73 -9 -3.3941 | opp_overlap 2185257 2185258, overlap 2185249 2185250 ATCAGAGTGAAGGAA GCAATCGGCG TTC CGCCGGTAGC GGTCGTATATATATT TERM 2489 2185262 - 2185250 - G 76 -10.5 -2.67166 | opp_overlap 2185257 2185258, overlap 2185249 2185245 AGTGAAGGAAGCAAT CGGCG TTC CGCCG GTAGCGGTCGTATAT TERM 2490 2189288 - 2189264 - G 72 -9.5 -2.64925 | overlap 2189263 ATATTTTATTACAAT TGAATCTATCA TAG TGATAAATTCA GCACGAGTTACTGCT TERM 2491 2189550 - 2189565 + g 73 -6.8 -4.33675 | ACGGCTTTCAGAACT GCGGTC TTTT GACTGC TTTTGCTGATATCCT TERM 2492 2190280 - 2190245 - R 100 -14.2 -5.20216 | opp_overlap 2190248 TATACTACGAAAAAA CAAGGCACTCTACG TTTAACTT CGTAAAGTGCCTTG CTACGATTTATGGAT Cphy_1776 2190892 - 2190317 - | hypothetical protein Cphy_1777 2192206 - 2191211 - | hypothetical protein Cphy_1778 2192309 - 2192749 + | hypothetical protein Cphy_1779 2193663 - 2192857 - | anaerobic cobalt chelatase Cphy_1780 2194968 - 2193934 - | hypothetical protein TERM 2493 2195056 - 2195021 - R 100 -14.4 -3.71883 | gap 1, opp_overlap 2195027, overlap 2195024 2195027 CAATACAACCCGAAA TAATAACCGAGTAGAGT GAA ACTCTA-TCGGTTATTA AAAGCCTATATTAGC TERM 2494 2195053 - 2195024 - R 100 -11.7 -3.97689 | gap 1, opp_overlap 2195027, overlap 2195021 2195027 TACAACCCGAAATAA TAACCGAGTAGAGT GAA ACTCTA-TCGGTTA TTAAAAGCCTATATT TERM 2495 2195027 - 2195050 + r 80 -9 -3.62224 | gap 1, opp_overlap 2195024 2195021 2195027 AACCCGAAATAATAA CCGAGTAGAGT GAA ACTCTA-TCGG TTATTAAAAGCCTAT TERM 2496 2195050 - 2195027 - R 85 -9 -4.1023 | gap 1, opp_overlap 2195027, overlap 2195024 2195021 AACCCGAAATAATAA CCGAGTAGAGT GAA ACTCTA-TCGG TTATTAAAAGCCTAT Cphy_1781 2196020 - 2195067 - | nitrite and sulphite reductase 4Fe-4S region TERM 2497 2195749 - 2195737 - G 73 -9.1 -3.33492 | GGACGTACTTTAGAA CCGGT ACC ACCGG TAACAAGTCCTTCTT Cphy_1782 2197801 - 2196182 - | FAD-dependent pyridine nucleotide-disulphide oxidoreductase Cphy_1783 2197991 - 2198899 + | MarR family transcriptional regulator TERM 2498 2198968 - 2199023 + F 78 -9.4 -3.22774 | gap 1, opp_overlap 2198969 2198978, overlap 2198970 2198978 AAACATGAAAACTAC ATTGCGAAAAGAATTCTCATATTTCAT AAC GTGGAA-ATGAGAATTCTTTTTGCATC TTAGTAATAAATATA TERM 2499 2198970 - 2199021 + F 100 -16.4 -3.17527 | gap 1, opp_overlap 2198969 2198978, overlap 2198968 2198978 ACATGAAAACTACAT TGCGAAAAGAATTCTCATATTTCAT AAC GTGGAA-ATGAGAATTCTTTTTGCA TCTTAGTAATAAATA TERM 2500 2198978 - 2199013 + F 93 -8.6 -4.75308 | gap 1, opp_overlap 2198978 2198969, overlap 2198970 2198968 ACTACATTGCGAAAA GAATTCTCATATTTCAT AAC GTGGAA-ATGAGAATTC TTTTTGCATCTTAGT Cphy_1784 2199381 - 2200622 + | glutamyl-tRNA reductase Cphy_1785 2200671 - 2201126 + | siroheme synthase Cphy_1786 2201182 - 2202087 + | porphobilinogen deaminase Cphy_1787 2202084 - 2203577 + | uroporphyrin-III C-methyltransferase TERM 2501 2203619 - 2203581 - f 78 -9.6 -3.34501 | opp_overlap 2203584 2203585, overlap 2203585 AGAGAATTGTGAGAA GAAATTCTAGGGCACCTT AAT ACGGTGCCGAAGAACTTC TAAATCTCACACAGA TERM 2502 2203615 - 2203585 - f 74 -6.8 -4.31835 | opp_overlap 2203585 2203584, overlap 2203581 AATTGTGAGAAGAAA TTCTAGGGCACCTT AAT ACGGTGCCGAAGAA CTTCTAAATCTCACA TERM 2503 2204338 - 2204352 + G 71 -8.6 -3.2268 | CCAATTATGTCTTAT GCTGTA AAA TACAGC TCTGCTTTTTATGGT Cphy_1788 2203765 - 2204748 + | delta-aminolevulinic acid dehydratase TERM 2504 2205870 - 2205856 - g 78 -8.6 -3.79747 | TTACGGATTACGAAA CAGCAA AGC TTGCTG ATACAAAGGAATTTG Cphy_1789 2204748 - 2206028 + | glutamate-1-semialdehyde-2,1-aminomutase TERM 2505 2206273 - 2206246 - f 86 -11.4 -2.61727 | opp_overlap 2206246, overlap 2206243 2206251 ATCCACTAGAATTGA GGACATGAGAGT GACA ACTTTCATGTCC TTTTTTTAGGTAGAG TERM 2506 2206246 - 2206273 + F 100 -13.6 -5.47218 | opp_overlap 2206246 2206243 2206251 ATCCACTAGAATTGA GGACATGAGAGT GACA ACTTTCATGTCC TTTTTTTAGGTAGAG Cphy_1790 2206410 - 2206877 + | DNA binding domain-containing protein Cphy_1791 2206918 - 2207283 + | hypothetical protein TERM 2507 2207443 - 2207483 + F 81 -4.1 -5.64421 | overlap 2207444 AAAATTAATAATTTG CGACCTTGTAGAAAAAGAT ATA ATTTCTTTATACAGGGTCC TTTTTTGTTTGACAT TERM 2508 2207444 - 2207482 + F 77 -7.6 -3.97026 | overlap 2207443 AAATTAATAATTTGC GACCTTGTAGAAAAAGAT ATA ATTTCTTTATACAGGGTC CTTTTTTGTTTGACA Cphy_1792 2207779 - 2209167 + | extracellular solute-binding protein TERM 2509 2209186 - 2209213 + F 100 -12.2 -4.10437 | opp_overlap 2209186 CAGTAAGTGAGTAAA GAGATTGGCTAT AGTT ATAGTCAATCTC TTCTTTACTTAATAA TERM 2510 2209213 - 2209186 - f 87 -10 -3.80114 | opp_overlap 2209186 CAGTAAGTGAGTAAA GAGATTGGCTAT AGTT ATAGTCAATCTC TTCTTTACTTAATAA Cphy_1793 2209241 - 2210020 + | short-chain dehydrogenase/reductase SDR TERM 2511 2210472 - 2210432 - T 100 -11.6 -4.08767 | opp_overlap 2210438 CCTACGCTTCTAAAA TTATAATTATTTATAGAC AGGTA GACTATAAATAATTATAA GGGATAAGATACAAT Cphy_1795 2211404 - 2210715 - | hypothetical protein TERM 2512 2212749 - 2212765 + G 76 -5.1 -5.05153 | overlap 2212751 CAAAAAAAATTATCT GCTACCA TGG TGGTATC TTTATTTTTTAAACT Cphy_1796 2212085 - 2212777 + | beta-lactamase domain-containing protein Cphy_1797 2213030 - 2213542 + | hypothetical protein Cphy_1798 2213800 - 2214297 + | mercuric transport protein periplasmic component TERM 2513 2214407 - 2214377 - T 100 -21.4 -4.25104 | opp_overlap 2214377 TCTGTTTTAGGAAAA TTAGCACCATCCGT TAG ACGGATGGTGCTAA TTTTATGGCGCCATG TERM 2514 2214377 - 2214407 + T 100 -21.4 -4.3739 | opp_overlap 2214377 TCTGTTTTAGGAAAA TTAGCACCATCCGT TAG ACGGATGGTGCTAA TTTTATGGCGCCATG Cphy_1799 2216098 - 2214443 - | glycoside hydrolase family protein TERM 2515 2216199 - 2216181 - R 83 -10.3 -3.33696 | opp_overlap 2216177 2216172, overlap 2216194 TCTCTTTCTAAGGAA GCTGCCT TAATT AGGCAGC TCCGCCTTGATTATA Cphy_1800 2218289 - 2216331 - | glycoside hydrolase family protein TERM 2516 2218232 - 2218256 + g 79 -10.9 -3.05521 | overlap 2218223 TACCGGCAGGTATCA TTGTTATTAGC AAT GCTAATGACAA TATTACCCCTATAAT Cphy_1801 2219386 - 2221623 + | ABC transporter related TERM 2517 2221778 - 2221725 - T 100 -27.3 -4.21644 | opp_overlap 2221732, overlap 2221727 AAAAACGAAACCAAA CATTAAATGGAGTGGAGCAATGAAC GTAT ATTCATTGCTCCACTCCATTTAATA TAAGCACTTAATAAT TERM 2518 2221776 - 2221727 - T 100 -27.7 -3.67051 | opp_overlap 2221732, overlap 2221725 AAACGAAACCAAACA TTAAATGGAGTGGAGCAATGAAC GTAT ATTCATTGCTCCACTCCATTTAA TATAAGCACTTAATA TERM 2519 2221732 - 2221771 + T 100 -22.5 -3.83205 | opp_overlap 2221727 2221725 AAACCAAACATTAAA TGGAGTGGAGCAATGAA CGTATA TTCATTGCTCCACTCCA TTTAATATAAGCACT Cphy_1802 2223398 - 2221794 - | ATPase, P-type (transporting), HAD superfamily, subfamily IC TERM 2520 2223588 - 2223555 - H 100 -18.4 -5.18371 | opp_overlap 2223548, overlap 2223575 TTTTACAAAATAAAA GACTCGTGTATAGC ACTAGA GCTATACACGAGTC TAAAAAATCATGTAT TERM 2521 2223625 - 2223596 - H 75 -5.1 -5.06451 | opp_overlap 2223595, overlap 2223575 CACGAGTCTAAAAAA TCATGTATGGC AAATAGAA GCTATACATGA GTCTCGTTTATTAAG TERM 2522 2223803 - 2223837 + H 75 -9.6 -2.80958 | opp_overlap 2223803 2223802 2223807 2223829, overlap 2223800 2223807 TGTTGATTGAAAAAC TAGATTCCATTTTTAA ATA TTAAATATGGAATTTA CTCTTTCTTAAACTC TERM 2523 2223807 - 2223833 + H 79 -8.2 -4.07859 | opp_overlap 2223803 2223802 2223807 2223829, overlap 2223803 2223800 GATTGAAAAACTAGA TTCCATTTTTAA ATA TTAAATATGGAA TTTACTCTTTCTTAA TERM 2524 2223833 - 2223807 - H 71 -8.2 -3.19102 | opp_overlap 2223807 2223803 2223800, overlap 2223803 2223802 2223829 GATTGAAAAACTAGA TTCCATTTTTAA ATA TTAAATATGGAA TTTACTCTTTCTTAA Cphy_1803 2223909 - 2225213 + | transposase TERM 2525 2225310 - 2225320 + T 81 -3.2 -5.80364 | TCTCCAGTCGTCTGT TTGC CAT GCAG TTTTTTTATTCCGAT TERM 2526 2225652 - 2225606 - T 100 -18.4 -2.58812 | opp_overlap 2225612, overlap 2225612 TTTAAATTTAAGTTA TATTAATTGCTGCCTTGGTATA TTA TATATCAAGGCAGCAATTAATG CGCTATTAAAAGTAA TERM 2527 2225612 - 2225646 + T 100 -19.6 -3.18735 | opp_overlap 2225612 2225606 TTTAAGTTATATTAA TTGCTGCCTTGGTATA TTA TATATCAAGGCAGCAA TTAATGCGCTATTAA TERM 2528 2225646 - 2225612 - T 100 -17.4 -3.29739 | opp_overlap 2225612, overlap 2225606 TTTAAGTTATATTAA TTGCTGCCTTGGTATA TTA TATATCAAGGCAGCAA TTAATGCGCTATTAA Cphy_1804 2228213 - 2225682 - | ATPase, P-type (transporting), HAD superfamily, subfamily IC TERM 2529 2226230 - 2226205 - G 71 -7.1 -3.91352 | gap 1, opp_overlap 2226204 2226212 ATATCTTGAATTAAA TTACCAA-TCAA AAG TTGAATTGGTAA CATTGGTACGTCTGC TERM 2530 2226501 - 2226539 + g 70 -2.6 -5.09204 | GTCACCTTGATACCC TACAACATTATTAAGT TTAAGTC GCTTTATTATGTTGTA TTTTTGTTCCGGTGT TERM 2531 2228395 - 2228373 - R 90 -8.4 -4.77079 | TAGACATGAATAAAA GAGTCGGTAT AGA ACACCGGCTC TCAGACTATAGACAA Cphy_1805 2229168 - 2228494 - | XRE family transcriptional regulator TERM 2532 2229691 - 2229701 + G 70 -6.8 -4.11394 | ACTGGAGGAGTGGCA TCGC CAG GCGA TTTTACGAATGCAGT Cphy_1806 2229469 - 2231334 + | hypothetical protein TERM 2533 2231478 - 2231454 - f 86 -10 -3.68222 | opp_overlap 2231454 GTGTAATTTCAAGAA GGCATCAGGA AAGTA TCCTGGTGCC TTTATCTTAATAAAA TERM 2534 2231454 - 2231478 + F 100 -12.2 -4.23674 | opp_overlap 2231454 GTGTAATTTCAAGAA GGCATCAGGA AAGTA TCCTGGTGCC TTTATCTTAATAAAA Cphy_1807 2231766 - 2232170 + | hypothetical protein TERM 2535 2232579 - 2232543 - f 100 -12.5 -4.78764 | opp_overlap 2232543 TAAATGTATTAAAAA TCTTTGCAATACTGCTT TTT AAGCATTAATGCAAAGA TTTTTTTATAAAAAA TERM 2536 2232543 - 2232579 + F 100 -12.5 -5.60993 | opp_overlap 2232543 TAAATGTATTAAAAA TCTTTGCAATACTGCTT TTT AAGCATTAATGCAAAGA TTTTTTTATAAAAAA Cphy_1808 2232772 - 2232987 + | BFD/(2Fe-2S)-binding domain-containing protein TERM 2537 2233092 - 2233123 + F 100 -6.8 -5.94597 | gap 1, opp_overlap 2233092 TATAACTAGAAAAAA TAAACC-AAGCAACT GTA ATTTGCTTTGGTTTA TTTTTTTTACTCTTA TERM 2538 2233123 - 2233092 - f 93 -6.8 -5.39755 | gap 1, opp_overlap 2233092 TATAACTAGAAAAAA TAAACC-AAGCAACT GTA ATTTGCTTTGGTTTA TTTTTTTTACTCTTA Cphy_1809 2233626 - 2234207 + | ribosomal 5S rRNA E-loop binding protein Ctc/L25/TL5 TERM 2539 2234277 - 2234304 + T 100 -13.6 -5.17576 | GTATATGGTGATTTT GAAGCTTTTTCG GTAA CGAAGAAGCTTC TTTTTTCACTTAATA TERM 2540 2234599 - 2234550 - T 100 -14.8 -5.80003 | gap 1, opp_overlap 2234555 2234561, overlap 2234555 TCAACAAAGAAAAAA TAAGACACAAAGATTCCCTCT AGTTGTGAA AGAGGGAATCTTTGTGT-TTA TAGGATTATTAATGA TERM 2541 2234595 - 2234555 - T 100 -17.2 -4.02034 | opp_overlap 2234555 2234561, overlap 2234550 AAAGAAAAAATAAGA CACAAAGATTCCCTCT AGTTGTGAA AGAGGGAATCTTTGTG TTTATAGGATTATTA TERM 2542 2234555 - 2234595 + T 100 -17.2 -3.95051 | opp_overlap 2234555 2234550, overlap 2234561 AAAGAAAAAATAAGA CACAAAGATTCCCTCT AGTTGTGAA AGAGGGAATCTTTGTG TTTATAGGATTATTA TERM 2543 2234561 - 2234589 + T 89 -9 -4.40003 | opp_overlap 2234555 2234550, overlap 2234555 AAAATAAGACACAAA GATTCCCTCT AGTTGTGAA AGAGGGAATC TTTGTGTTTATAGGA Cphy_1810 2236013 - 2234673 - | MATE efflux family protein TERM 2544 2235064 - 2235089 + g 72 -8.4 -3.53247 | overlap 2235063 2235067 ATTATTTTAACCGCT GAGCGTATTC CAGTAC GAATACGTTC TAATTTTTTTGCTCC Cphy_1811 2236246 - 2236704 + | AsnC family transcriptional regulator TERM 2545 2236995 - 2236949 - T 95 -8.9 -4.9934 | opp_overlap 2236949 2236953 2236956, overlap 2236953 2236956 AGAAGATGAGAAAAA GCAATAATCTCCGAACGTCTT AACAA AAGATGTTCGGAGATTATAAA TTTTTATAGCTTTAT TERM 2546 2236949 - 2236995 + T 95 -8.9 -4.95896 | opp_overlap 2236949 2236953 2236956, overlap 2236953 2236956 AGAAGATGAGAAAAA GCAATAATCTCCGAACGTCTT AACAA AAGATGTTCGGAGATTATAAA TTTTTATAGCTTTAT TERM 2547 2236991 - 2236953 - T 100 -16.3 -3.89607 | opp_overlap 2236949 2236953 2236956, overlap 2236949 2236956 GATGAGAAAAAGCAA TAATCTCCGAACGTCTT AACAA AAGATGTTCGGAGATTA TAAATTTTTATAGCT TERM 2548 2236953 - 2236991 + T 100 -18.5 -2.89069 | opp_overlap 2236953 2236949 2236956, overlap 2236949 2236956 GATGAGAAAAAGCAA TAATCTCCGAACGTCTT AACAA AAGATGTTCGGAGATTA TAAATTTTTATAGCT TERM 2549 2236988 - 2236956 - T 100 -13.6 -4.0498 | opp_overlap 2236953 2236949 2236956, overlap 2236953 2236949 GAGAAAAAGCAATAA TCTCCGAACGTCTT AACAA AAGATGTTCGGAGA TTATAAATTTTTATA TERM 2550 2236956 - 2236988 + T 100 -15.8 -3.57767 | opp_overlap 2236956 2236953 2236949, overlap 2236953 2236949 GAGAAAAAGCAATAA TCTCCGAACGTCTT AACAA AAGATGTTCGGAGA TTATAAATTTTTATA Cphy_1812 2239186 - 2237102 - | membrane-bound proton-translocating pyrophosphatase TERM 2551 2237154 - 2237140 - G 90 -8.6 -4.68424 | TAAGTGATGCAAAAA CTATGG AAA CCATAG AAGTAAGCTTAATTA Cphy_1813 2239524 - 2239865 + | hypothetical protein TERM 2552 2240078 - 2240109 + F 81 -4.5 -5.47821 | opp_overlap 2240080 2240083, overlap 2240080 GGTCAAAGAAATTAT AACAACCCACTAA TAATAT TTAGTAGGTTGTG TTTTTTTACATAAAT TERM 2553 2240107 - 2240080 - f 80 -9.3 -3.72242 | opp_overlap 2240078 2240080, overlap 2240083 TCAAAGAAATTATAA CAACCCACTAA TAATAT TTAGTAGGTTG TGTTTTTTTACATAA TERM 2554 2240080 - 2240107 + F 79 -7.1 -4.37763 | opp_overlap 2240080 2240083, overlap 2240078 TCAAAGAAATTATAA CAACCCACTAA TAATAT TTAGTAGGTTG TGTTTTTTTACATAA Cphy_1814 2240387 - 2241178 + | methyltransferase type 12 TERM 2555 2241270 - 2241297 + F 100 -11.4 -4.3208 | GGGGCAGTACGGTAT GGCACAGGATAT TTCG GTATTCTGTGCC TTTTCCGTTGTCACG TERM 2556 2241542 - 2241554 + F 71 -5.5 -4.62203 | opp_overlap 2241542 ATGACATGAAAAATT TCGCG AGG CGTGA TTTTCCTTGTTTAGA TERM 2557 2241787 - 2241769 - g 70 -3.2 -5.06735 | opp_overlap 2241773, overlap 2241773 TATAAACGATAAAAA TAAGCTTT TAA AAAGATTA ATCAAATCATATTTA Cphy_1815 2241716 - 2244034 + | leucine-rich repeat-containing protein TERM 2558 2244041 - 2244070 + F 100 -17.3 -4.00124 | opp_overlap 2244041, overlap 2244044 ATTAACTAAGAAAAA CAAGCGAAAGCGG TTTA CTGCTTTCGCTTG TTTCATTATGAGATC TERM 2559 2244070 - 2244041 - f 100 -15.1 -5.20534 | opp_overlap 2244041 2244044 ATTAACTAAGAAAAA CAAGCGAAAGCGG TTTA CTGCTTTCGCTTG TTTCATTATGAGATC TERM 2560 2244044 - 2244067 + F 100 -13.2 -4.12296 | opp_overlap 2244041, overlap 2244041 AACTAAGAAAAACAA GCGAAAGCGG TTTA CTGCTTTCGC TTGTTTCATTATGAG Cphy_1816 2244708 - 2246063 + | anaerobic c4-dicarboxylate antiporter TERM 2561 2246096 - 2246067 - f 89 -12.3 -2.74012 | opp_overlap 2246072, overlap 2246072 TTATTATTTTAAGCA TAAAATGAGCGCT TATC AGCGCTCATTTTT ATCATAAAGATCGTG TERM 2562 2246091 - 2246072 - f 100 -12.2 -4.54821 | opp_overlap 2246072, overlap 2246067 ATTTTAAGCATAAAA TGAGCGCT TATC AGCGCTCA TTTTTATCATAAAGA TERM 2563 2246072 - 2246091 + F 100 -12.2 -4.91109 | opp_overlap 2246072 2246067 ATTTTAAGCATAAAA TGAGCGCT TATC AGCGCTCA TTTTTATCATAAAGA Cphy_1817 2246159 - 2246575 + | GCN5-related N-acetyltransferase TERM 2564 2246678 - 2246657 - f 91 -4.6 -5.9218 | GAGATAATAAAAAAA TGATAATA AGATAA TATTATCA GGAATAAAAACATTT TERM 2565 2246794 - 2246782 - g 79 -4.9 -5.243 | CAAATTATGAAAAAA CTAAT TGT ATTAG GAAGTCTAAACATGG TERM 2566 2247514 - 2247500 - g 76 -4.2 -5.17786 | CAAGAAAAGTAAAAA CAGTAG ATA CAACTG CAGCAGGAGATTCTT Cphy_1818 2246773 - 2247699 + | ribokinase-like domain-containing protein Cphy_1819 2247692 - 2248612 + | ribonucleoside hydrolase RihC Cphy_1820 2248749 - 2250164 + | anaerobic c4-dicarboxylate antiporter TERM 2567 2250152 - 2250170 + F 76 -5.4 -4.9725 | overlap 2250154 TATCTTATCTATGAT TTTATTCT TAT AGAATAGA TTTTTCTCTGCACGT TERM 2568 2250441 - 2250451 + G 70 -2.6 -5.14626 | overlap 2250444 2250445 TTTAATCATACCTGA TATT GAA AATA TTTTCTTTTCATCCT Cphy_1821 2250232 - 2251248 + | LacI family transcription regulator TERM 2569 2251483 - 2251527 + F 100 -10.9 -4.79752 | opp_overlap 2251485, overlap 2251486 TTTTAATCTTTTTAA TATGTGAATTAAGGAAACTTG TAA CGAGTCGCCTTAATTCACTTA TTTTATATTCTTAAA TERM 2570 2251525 - 2251485 - f 74 -9.1 -3.03159 | opp_overlap 2251483 2251486 TTAATCTTTTTAATA TGTGAATTAAGGAAACTTG TAA CGAGTCGCCTTAATTCACT TATTTTATATTCTTA TERM 2571 2251486 - 2251524 + F 100 -12.6 -4.47977 | opp_overlap 2251485, overlap 2251483 TAATCTTTTTAATAT GTGAATTAAGGAAACTTG TAA CGAGTCGCCTTAATTCAC TTATTTTATATTCTT Cphy_1822 2251694 - 2252137 + | GCN5-related N-acetyltransferase TERM 2572 2252229 - 2252241 + F 71 -7.7 -3.48924 | AAGTGTTTGGGCGAG GTTCC ATT GGAAC TTGTCTAGAAACTAG TERM 2573 2254588 - 2254576 - g 73 -6.3 -4.41137 | opp_overlap 2254576 CAGAAGGAGAATAAA GAAGA GTA TCTTC TTGTAGATGGATATA Cphy_1823 2252443 - 2255100 + | small GTP-binding protein Cphy_1824 2255253 - 2255684 + | BadM/Rrf2 family transcriptional regulator TERM 2574 2255695 - 2255725 + F 100 -6.2 -6.02914 | opp_overlap 2255695 TATAAGATTAAAAAA GATATCTTTACCTG GGG CGGGTAACCATATC TTTTTTTTGTGTACG TERM 2575 2255725 - 2255695 - f 74 -4 -5.30189 | opp_overlap 2255695 TATAAGATTAAAAAA GATATCTTTACCTG GGG CGGGTAACCATATC TTTTTTTTGTGTACG TERM 2576 2255812 - 2255780 - f 71 -8 -3.36216 | opp_overlap 2255778 2255788, overlap 2255779 2255781 GTTAAAGCATAAAAT TCTATAAACATATA GGCAT TATATGTTTATAGG GGTAATATACTACTA TERM 2577 2255811 - 2255781 - f 86 -11.5 -2.61007 | opp_overlap 2255778 2255788, overlap 2255780 2255779 TTAAAGCATAAAATT CTATAAACATATA GGCAT TATATGTTTATAG GGGTAATATACTACT Cphy_1825 2255921 - 2256784 + | nitrite and sulphite reductase 4Fe-4S region Cphy_1826 2256918 - 2257940 + | sulfate ABC transporter, periplasmic sulfate-binding protein Cphy_1827 2257959 - 2258801 + | sulfate ABC transporter, inner membrane subunit CysT Cphy_1828 2258812 - 2259816 + | sulfate ABC transporter, inner membrane subunit Cphy_1829 2260015 - 2261079 + | sulfate ABC transporter, ATPase subunit Cphy_1830 2261232 - 2262932 + | adenylylsulfate reductase Cphy_1831 2262916 - 2263227 + | 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein TERM 2578 2264177 - 2264164 - g 80 -2.3 -5.68023 | opp_overlap 2264172 CCAGAATTAAAAAAA GTACG TTTC CGAAC ACTTGGTTGTTATCC Cphy_1832 2263444 - 2264346 + | sulfate adenylyltransferase subunit 2 TERM 2579 2265346 - 2265332 - g 70 -8.6 -2.98387 | overlap 2265329 GGTCACAAAAGATTA CCTAGT AAA ACTAGG AACTAAAATGATTCC Cphy_1833 2264346 - 2266037 + | sulfate adenylyltransferase, large subunit TERM 2580 2266194 - 2266164 - T 71 -7.9 -3.53279 | gap 1, opp_overlap 2266162 2266159 2266164, overlap 2266162 2266157 2266165 2266178 2266180 2266181 TCTATAAATACAACA GCTTGTATATACAA CAGC TTGTATATACAA-C AGCTTGTATATACAA Cphy_1834 2267001 - 2266336 - | hypothetical protein TERM 2581 2267123 - 2267090 - R 77 -8.1 -3.77241 | AAATGTCAATTTAAA TACCCCCACGACTCA TAAT TTAGAGGTGGGGGTA CTGAGAATTGAGTAG Cphy_1835 2268836 - 2267232 - | putative ABC-2 type transport system permease protein TERM 2582 2268307 - 2268290 - G 73 -9.1 -3.3579 | overlap 2268278 2268288 2268291 AAAGCTGTGCAAACA CCGCAGC GACT GCTGCGA AAAACAATCCTGCAG TERM 2583 2268306 - 2268291 - G 76 -10.4 -2.60992 | overlap 2268278 2268288 2268290 AAGCTGTGCAAACAC CGCAGC GACT GCTGCG AAAAACAATCCTGCA Cphy_1836 2269735 - 2268839 - | ABC transporter related TERM 2584 2269299 - 2269284 - G 74 -4 -5.2015 | gap 1, overlap 2269287 TCAAGAATATAAAAA TCAGCGT CGG ACGC-GA AAGCGGATACAAGAG Cphy_1837 2270469 - 2269861 - | TetR family transcriptional regulator TERM 2585 2270517 - 2270533 + H 76 -9.5 -3.04144 | overlap 2270511 2270508 2270519 TTTGACCTATTCGTA TAGAACG AAT CGTTCTA TATTGAGAATAGCAG TERM 2586 2270964 - 2270950 - H 74 -7.2 -3.97947 | opp_overlap 2270952 CTTATTTATTATAAA CATAAC AGT GTTATG TATAAAAACGGTGAT Cphy_1838 2271003 - 2271590 + | TetR family transcriptional regulator Cphy_1839 2271583 - 2271999 + | hypothetical protein Cphy_1840 2272021 - 2272560 + | multimeric flavodoxin WrbA-like protein Cphy_1841 2272557 - 2273213 + | hypothetical protein Cphy_1842 2273514 - 2274101 + | GCN5-related N-acetyltransferase Cphy_1843 2274130 - 2274657 + | hypothetical protein TERM 2587 2274725 - 2274708 - f 76 -7.1 -4.15565 | opp_overlap 2274706 2274708 TTTATCATTTTAAAA TATCTTG ACAT CAAGATA TATTCGTGTTATAAT TERM 2588 2274740 - 2274759 + F 71 -8 -3.28001 | opp_overlap 2274740, overlap 2274735 ATATTCGTGTTATAA TTATCTTG AAAT CAAGATAA TTCGATTTAAGAATA TERM 2589 2274759 - 2274740 - f 71 -8 -3.29263 | opp_overlap 2274735 2274740 ATATTCGTGTTATAA TTATCTTG AAAT CAAGATAA TTCGATTTAAGAATA Cphy_1844 2274803 - 2275228 + | MarR family transcriptional regulator TERM 2590 2275406 - 2275389 - f 70 -7.1 -3.67918 | AATCAATATGGTAAA CACTAAT ATAA ATTAGTG AGGAAAGGAGATTTC Cphy_1845 2275424 - 2276128 + | pirin domain-containing protein TERM 2591 2276210 - 2276227 + T 100 -11.3 -4.66609 | opp_overlap 2276210 TTCCAAAATAAAAAA GTCGTGG GATT CCACGAC TTTTTAGGTGAACTA TERM 2592 2276227 - 2276210 - T 100 -11.3 -5.79595 | opp_overlap 2276210 TTCCAAAATAAAAAA GTCGTGG GATT CCACGAC TTTTTAGGTGAACTA TERM 2593 2276347 - 2276398 + T 100 -14.9 -4.56802 | opp_overlap 2276347 TATGCATAGATAAAA TTACCTTCATGCAATTCTGAT GTTAGTTTCA ATCAAAATTGCATGAAGGTAA TTTTAATGTTTGTTT TERM 2594 2276398 - 2276347 - T 100 -17.1 -4.61868 | opp_overlap 2276347 TATGCATAGATAAAA TTACCTTCATGCAATTCTGAT GTTAGTTTCA ATCAAAATTGCATGAAGGTAA TTTTAATGTTTGTTT Cphy_1846 2276983 - 2276444 - | hypothetical protein Cphy_1847 2277137 - 2277997 + | polysaccharide deacetylase TERM 2595 2278129 - 2278094 - f 100 -15.1 -3.38207 | opp_overlap 2278097 2278102, overlap 2278097 2278102 TAGCTAATACAGGAA TAATAAAAGTCAGAC TTAGCG GTCTGACTTTTATTA TTAGGAAAGATATAA TERM 2596 2278097 - 2278126 + F 100 -13.1 -3.61715 | opp_overlap 2278097 2278094 2278102, overlap 2278102 CTAATACAGGAATAA TAAAAGTCAGACT TAGC GGTCTGACTTTTA TTATTAGGAAAGATA TERM 2597 2278126 - 2278097 - f 100 -12.4 -3.82205 | opp_overlap 2278097 2278102, overlap 2278094 2278102 CTAATACAGGAATAA TAAAAGTCAGAC TTAGCG GTCTGACTTTTA TTATTAGGAAAGATA TERM 2598 2278121 - 2278102 - f 89 -7.9 -4.93661 | opp_overlap 2278102 2278097, overlap 2278097 2278094 ACAGGAATAATAAAA GTCAGAC TTAGCG GTCTGAC TTTTATTATTAGGAA TERM 2599 2278102 - 2278121 + F 93 -8.6 -4.89477 | opp_overlap 2278097 2278094 2278102, overlap 2278097 ACAGGAATAATAAAA GTCAGACT TAGC GGTCTGAC TTTTATTATTAGGAA Cphy_1848 2278216 - 2278464 + | MerR family transcriptional regulator Cphy_1849 2278630 - 2278938 + | hypothetical protein Cphy_1850 2279006 - 2279350 + | HxlR family transcriptional regulator TERM 2600 2280089 - 2280103 + G 80 -10 -3.52147 | overlap 2280085 TTGGATGGACTCCGT GCATCG GAC CGATGC TTGCTTCTGTGCTTG Cphy_1851 2279608 - 2280837 + | cytochrome c biogenesis protein transmembrane region Cphy_1852 2281237 - 2281617 + | glyoxalase/bleomycin resistance protein/dioxygenase TERM 2601 2281690 - 2281730 + T 100 -13 -3.39931 | gap 1, opp_overlap 2281690 2281693 2281700, overlap 2281693 2281700 ACCAGGTAAGAAGGA TAATACAAAA-GTCAGACT TTAA GGTCTGACTTTTTGTATTA TTGATATTAAATTGT TERM 2602 2281730 - 2281690 - T 90 -12.3 -2.95139 | gap 1, opp_overlap 2281690 2281693 2281700, overlap 2281693 2281700 ACCAGGTAAGAAGGA TAATACAAA-AGTCAGAC TTTAAG GTCTGACTTTTTGTATTA TTGATATTAAATTGT TERM 2603 2281693 - 2281727 + T 89 -10.3 -3.82486 | gap 1, opp_overlap 2281690 2281693 2281700, overlap 2281690 2281700 AGGTAAGAAGGATAA TACAAAA-GTCAGACT TTAA GGTCTGACTTTTTGTA TTATTGATATTAAAT TERM 2604 2281727 - 2281693 - T 82 -9.6 -3.6149 | gap 1, opp_overlap 2281693 2281690 2281700, overlap 2281690 2281700 AGGTAAGAAGGATAA TACAAA-AGTCAGAC TTTAAG GTCTGACTTTTTGTA TTATTGATATTAAAT TERM 2605 2281700 - 2281719 + T 95 -8.6 -5.2015 | opp_overlap 2281693 2281690 2281700, overlap 2281693 2281690 AAGGATAATACAAAA GTCAGACT TTAA GGTCTGAC TTTTTGTATTATTGA TERM 2606 2281719 - 2281700 - T 87 -7.9 -4.76193 | opp_overlap 2281700 2281693 2281690, overlap 2281693 2281690 AAGGATAATACAAAA GTCAGAC TTTAAG GTCTGAC TTTTTGTATTATTGA Cphy_1853 2282233 - 2281811 - | hypothetical protein Cphy_1854 2282910 - 2282230 - | hypothetical protein Cphy_1855 2283368 - 2282934 - | hypothetical protein TERM 2607 2283400 - 2283422 + r 100 -12.2 -3.88498 | opp_overlap 2283398 TATTGATCGAAATTT TTCCTACTTT ATA AAAGTAGGAA TTTAATATATACAGC Cphy_1856 2283981 - 2283424 - | TetR family transcriptional regulator TERM 2608 2284002 - 2284014 + r 74 -6.3 -4.35461 | opp_overlap 2284002 2284000 ATCACCTCCACAATA TGAAC ACT GTTCA TTTTAATGCTATTAG TERM 2609 2284339 - 2284309 - R 100 -14.8 -5.63517 | opp_overlap 2284309 GTGGTAAACAAAAAA CTCCGTCGGATAAT GAA ACTAACCGACGGAG TTTTTTGTTATACTT TERM 2610 2284309 - 2284339 + r 100 -12.6 -5.59534 | opp_overlap 2284309 GTGGTAAACAAAAAA CTCCGTCGGATAAT GAA ACTAACCGACGGAG TTTTTTGTTATACTT Cphy_1857 2287055 - 2284398 - | ABC transporter related TERM 2611 2286151 - 2286161 + g 72 -4 -4.97402 | CTGATTGGATAAGTG GATA GGG TATC TTTTTGTACATTTTC TERM 2612 2287547 - 2287489 - H 90 -9.5 -4.2573 | gap 1, opp_overlap 2287489 CAAATAATGTTAAAA TTATTGACAAACGATAATCTTAGGTCTA CAAT TAAAG-TAAAATTATCGTTTATCAATAA TTTAGGAGGGAAAAA Cphy_1858 2287562 - 2288530 + | hypothetical protein Cphy_1859 2288545 - 2288772 + | XRE family transcriptional regulator Cphy_1860 2288762 - 2289757 + | hypothetical protein TERM 2613 2289837 - 2289806 - f 78 -6.7 -4.40358 | gap 1, opp_overlap 2289832 2289834, overlap 2289834 AGGTAGTTTATAAAA GCTCC-AGTGGAAT GTGAA ATTCCACCAAGAGC AGTTGATGCTAATTC TERM 2614 2289832 - 2289862 + F 74 -4 -5.26247 | opp_overlap 2289806 2289834, overlap 2289834 ATGTGAAATTCCACC AAGAGCAGTTGA TGCTAAT TCGGCTGCTCTA TTTTGTTTATTTTAG TERM 2615 2289834 - 2289860 + F 74 -6.6 -4.22317 | opp_overlap 2289806 2289834, overlap 2289832 GTGAAATTCCACCAA GAGCAGTTGA TGCTAAT TCGGCTGCTC TATTTTGTTTATTTT TERM 2616 2290067 - 2290088 + F 74 -3.1 -5.4505 | ATTATCGCGACACAT TCTTAGTTT CGAT AAAATAAGA TTTTTTATTAAACAA Cphy_1861 2290142 - 2290819 + | two component transcriptional regulator Cphy_1862 2290812 - 2291861 + | integral membrane sensor signal transduction histidine kinase Cphy_1863 2292105 - 2292530 + | CDP-alcohol phosphatidyltransferase TERM 2617 2292632 - 2292673 + F 100 -13.9 -6.02914 | opp_overlap 2292632 TAATATAATAAGAAA TCGAGTAGCAAGTAGTGGA TTAT TTCTCTACTTTCTACTCGA TTTTTTTTATATCAA TERM 2618 2292673 - 2292632 - f 100 -11.7 -4.57503 | opp_overlap 2292632 TAATATAATAAGAAA TCGAGTAGCAAGTAGTGGA TTAT TTCTCTACTTTCTACTCGA TTTTTTTTATATCAA TERM 2619 2292789 - 2292771 - f 82 -6.1 -4.98911 | TAGGAGAAAAAGAAA TGCTATT TGGAT AATAGCA GATTAAATAAGGAAC TERM 2620 2292899 - 2292864 - f 87 -10 -3.92641 | gap 1, opp_overlap 2292868, overlap 2292884 AATTTTATTGACAAA CTAACGCTTGTTAGCTA AAA TA-CTAACAAGTGTTAG TTAAGGAGGGGTACT TERM 2621 2293057 - 2293045 - f 77 -9.1 -3.20709 | overlap 2293043 ATAATATGAGGAATA GGTGC GAA GCACC AGAAGAGAGGGTAAT Cphy_1864 2293073 - 2293687 + | TetR family transcriptional regulator Cphy_1865 2293691 - 2294365 + | NADPH-dependent FMN reductase TERM 2622 2294403 - 2294426 + F 74 -7.6 -3.94634 | opp_overlap 2294403, overlap 2294425 TTAGAAGTAAACAAA TATATGACAT ATAG GTGTCATATA TTATTTGCGATAATA TERM 2623 2294426 - 2294403 - f 79 -6.9 -4.59982 | opp_overlap 2294403 2294425 TTAGAAGTAAACAAA TATATGACA TATAGG TGTCATATA TTATTTGCGATAATA Cphy_1866 2294555 - 2295754 + | hypothetical protein TERM 2624 2296303 - 2296317 + G 70 -6.4 -4.0127 | opp_overlap 2296303 TGGAAAAGTAAAAGA GGGTAC GAA GTATCC TTTCCTTATCAGTAT Cphy_1867 2295917 - 2297356 + | hypothetical protein TERM 2625 2297445 - 2297395 - T 100 -13.6 -3.90464 | opp_overlap 2297402, overlap 2297387 2297396 2297398 2297402 GGGGAAATAATACAA TTATAAATAGAACAGCTCTGAC TGCGGAT GCCAGGGCTGTTCTATTTATAC TAAGATAAGGAAAAG TERM 2626 2297444 - 2297396 - T 100 -17.1 -2.93555 | opp_overlap 2297402, overlap 2297387 2297395 2297398 2297402 GGGAAATAATACAAT TATAAATAGAACAGCTCTGAC TGCGGAT GCCAGGGCTGTTCTATTTATA CTAAGATAAGGAAAA TERM 2627 2297442 - 2297398 - T 100 -15.3 -3.00785 | opp_overlap 2297402, overlap 2297396 2297395 2297402 GAAATAATACAATTA TAAATAGAACAGCTCTGAC TGCGGAT GCCAGGGCTGTTCTATTTA TACTAAGATAAGGAA TERM 2628 2297402 - 2297438 + T 100 -11.7 -3.9712 | opp_overlap 2297402 2297398 2297396 2297395 TAATACAATTATAAA TAGAACAGCTCTGAC TGCGGAT GCCAGGGCTGTTCTA TTTATACTAAGATAA TERM 2629 2297438 - 2297402 - T 100 -11.7 -4.14004 | opp_overlap 2297402, overlap 2297398 2297396 2297395 TAATACAATTATAAA TAGAACAGCTCTGAC TGCGGAT GCCAGGGCTGTTCTA TTTATACTAAGATAA Cphy_1868 2299213 - 2297567 - | FAD-dependent pyridine nucleotide-disulphide oxidoreductase Cphy_1869 2299589 - 2299236 - | rhodanese domain-containing protein Cphy_1870 2300033 - 2300503 + | hypothetical protein Cphy_1871 2300628 - 2301188 + | metallophosphoesterase TERM 2630 2301556 - 2301538 - g 72 -8.2 -3.56959 | overlap 2301524 AGATAAGTTACAGAA CCTTATCC TTC GGATAAAG TACGCAAATTTTCTT Cphy_1872 2301347 - 2302306 + | putative homoserine kinase type II (protein kinase fold)-like protein TERM 2631 2303421 - 2303404 - g 76 -7.7 -4.13911 | TAAAAGATAACCAAA CACCTCC AGTA GAAGGTG GAAAACCTGATCTTA Cphy_1873 2302530 - 2305805 + | carbohydrate-binding family 6 protein TERM 2632 2305823 - 2305853 + F 93 -11.3 -3.61268 | opp_overlap 2305829, overlap 2305829 2305849 CGATAGTGATGATTA GGAAAATGGGGTC GTACA GACCTCATTTTTC TTTGAAAGTTAGGTA TERM 2633 2305829 - 2305847 + F 88 -6.7 -5.27938 | opp_overlap 2305829, overlap 2305823 TGATGATTAGGAAAA TGGGGTC GTACA GACCTCA TTTTTCTTTGAAAGT TERM 2634 2306671 - 2306696 + G 82 -11.3 -3.44146 | opp_overlap 2306670 2306673 CTTTACAAAGTATAT CACGGTCTTTA CAAG TAAAGACTGTG TTGATTATAAGGAAC Cphy_1874 2305913 - 2308174 + | Kojibiose phosphorylase TERM 2635 2308268 - 2308246 - f 72 -4.8 -4.75289 | overlap 2308247 2308250 GATGACAATACAAAA GTTATGCGCA GCA TGCGCAGAAA AGAGGTCTAAGATGA TERM 2636 2308267 - 2308247 - f 73 -8.3 -3.44089 | overlap 2308246 2308250 ATGACAATACAAAAG TTATGCGCA GCA TGCGCAGAA AAGAGGTCTAAGATG TERM 2637 2308264 - 2308250 - f 79 -10 -2.85564 | overlap 2308247 2308246 ACAATACAAAAGTTA TGCGCA GCA TGCGCA GAAAAGAGGTCTAAG Cphy_1875 2308280 - 2308927 + | beta-phosphoglucomutase TERM 2638 2308962 - 2308980 + F 74 -7.4 -4.07568 | TTATTTTAACCTCAT CAGGGAAG AGA CTTGCCTG TTTTAAAAAGCCACG TERM 2639 2309002 - 2308990 - f 90 -9.1 -4.56597 | TGCCTGTTTTAAAAA GCCAC GTA GTGGC AATGAGGTTATGAGT TERM 2640 2310269 - 2310257 - g 82 -7.7 -4.39287 | TCAATTACATTAAAA CCAGT GTT ACTGG AACGTGATTCGACAA Cphy_1876 2309264 - 2310301 + | LacI family transcription regulator TERM 2641 2311733 - 2311743 + G 86 -6.8 -5.24129 | TGCGTATTCATAGTT CGGA CAA TCCG TTTTTTGTAAAAGAA Cphy_1877 2310355 - 2312748 + | glycoside hydrolase family protein TERM 2642 2313253 - 2313263 + G 74 -4 -5.1523 | TTGGTCGAATGATTA CATT AAA AATG TTTTTCTATTATCCG Cphy_1878 2312810 - 2314963 + | methyl-accepting chemotaxis sensory transducer Cphy_1879 2315244 - 2316557 + | extracellular solute-binding protein Cphy_1880 2316885 - 2318273 + | fructose-bisphosphate aldolase Cphy_1881 2318273 - 2319553 + | binding-protein-dependent transport systems inner membrane component TERM 2643 2319573 - 2319609 + F 83 -6.8 -4.86939 | gap 2, opp_overlap 2319573 TTAGATACAATTGAA GAGCTT-TCCAAG-ATGC CTA GCATTTTTGGGTAAGCTC TTTTTCAATTTATTA Cphy_1882 2319649 - 2323881 + | parallel beta-helix repeat-containing protein Cphy_1883 2324145 - 2325200 + | LacI family transcription regulator Cphy_1884 2325318 - 2326274 + | dihydrouridine synthase DuS Cphy_1885 2326384 - 2326995 + | hypothetical protein Cphy_1886 2327638 - 2329545 + | peptidoglycan binding domain-containing protein TERM 2644 2329610 - 2329558 - f 77 -4.3 -5.24416 | opp_overlap 2329565, overlap 2329564 2329565 2329567 TAATTAGAATAAAAA TGATAAGCAGCAAAGAGAGAAATCT ATC AAATTTCTAACTTTGCTGTTTTTTA TTGTATCTAAAAATA TERM 2645 2329604 - 2329564 - f 74 -7.7 -3.81195 | opp_overlap 2329565, overlap 2329558 2329565 2329567 GAATAAAAATGATAA GCAGCAAAGAGAGAAATCT ATC AAATTTCTAACTTTGCTGT TTTTTATTGTATCTA TERM 2646 2329565 - 2329603 + F 100 -9 -5.62045 | opp_overlap 2329564 2329558 2329565 2329567 AATAAAAATGATAAG CAGCAAAGAGAGAAATCT ATC AAATTTCTAACTTTGCTG TTTTTTATTGTATCT TERM 2647 2329603 - 2329565 - f 83 -11.2 -2.8709 | opp_overlap 2329565, overlap 2329564 2329558 2329567 AATAAAAATGATAAG CAGCAAAGAGAGAAATCT ATC AAATTTCTAACTTTGCTG TTTTTTATTGTATCT TERM 2648 2329684 - 2329729 + F 100 -15.9 -3.35679 | gap 1, opp_overlap 2329696 2329701, overlap 2329685 ACGTAAGTAGTTGGG T-TATCGTACACAGTGAATTGT TTT ACAATTGACTGTGTACGATATA TTGTAACTGCGGCCC TERM 2649 2329685 - 2329727 + F 100 -21 -3.24924 | opp_overlap 2329696 2329701, overlap 2329684 CGTAAGTAGTTGGGT TATCGTACACAGTGAATTGT TTT ACAATTGACTGTGTACGATA TATTGTAACTGCGGC TERM 2650 2332313 - 2332303 - g 85 -2.6 -5.89921 | ATCAGAAGAAAAAAA TAAT AGA ATTA GATCCAACGCGCGTA Cphy_1887 2329767 - 2332379 + | hypothetical protein TERM 2651 2332408 - 2332418 + F 74 -5.4 -4.92791 | TATTGAGAAAAGTTC GCAA AGC TTGC TTTTCTTGTATTATG TERM 2652 2334531 - 2334543 + G 72 -4.1 -4.94902 | opp_overlap 2334528 2334531 AATATAAGGGAACAG CTACG AAC TGTAG TTTTTATAATAGTTC Cphy_1888 2332943 - 2334793 + | hypothetical protein Cphy_1889 2336311 - 2335316 - | Ig domain-containing protein TERM 2653 2336339 - 2336315 - H 77 -8 -3.85698 | TTTTGCTGTCATAAA TATCCTCCAT AAGAA ATGGAGAATA ATGCAATTTAAGAAA Cphy_1890 2336694 - 2337233 + | hypothetical protein Cphy_1891 2337238 - 2338230 + | PT repeat-containing protein TERM 2654 2338396 - 2338370 - f 79 -6.6 -4.68209 | opp_overlap 2338372, overlap 2338372 ATGTGAATAAAGAAA GAGCGTTTACTT TAC AAGTAAGCGCTT TTTGTGTAAACTTAA TERM 2655 2338394 - 2338372 - f 81 -9.2 -3.94772 | opp_overlap 2338372, overlap 2338370 GTGAATAAAGAAAGA GCGTTTACTT TAC AAGTAAGCGC TTTTTGTGTAAACTT TERM 2656 2338372 - 2338394 + F 100 -11.4 -4.98522 | opp_overlap 2338372 2338370 GTGAATAAAGAAAGA GCGTTTACTT TAC AAGTAAGCGC TTTTTGTGTAAACTT TERM 2657 2339357 - 2339374 + G 70 -8.5 -3.30124 | overlap 2339360 CAAAACCAGGGGGCT TAACCTC AACT GAGGTTA TTGTAAAGAATAAAC Cphy_1892 2338471 - 2339646 + | monogalactosyldiacylglycerol synthase Cphy_1893 2339627 - 2340271 + | hypothetical protein TERM 2658 2340351 - 2340341 - f 86 -4 -5.82316 | opp_overlap 2340341 AGTATGGAAAAAAAA TCAT GTT ATGA TATAATGATGAGGGA Cphy_1894 2340490 - 2341062 + | cyclase family protein Cphy_1895 2341078 - 2341467 + | hemerythrin-like metal-binding protein TERM 2659 2341608 - 2341638 + F 100 -12 -4.07306 | opp_overlap 2341608 TTAACTAAATTAAAA GCGATGAAGCAAAA TTA TATTGTTTCATCGC TTTGTACTTGAATCT TERM 2660 2341638 - 2341608 - f 93 -9.8 -4.62054 | opp_overlap 2341608 TTAACTAAATTAAAA GCGATGAAGCAAAA TTA TATTGTTTCATCGC TTTGTACTTGAATCT Cphy_1896 2342291 - 2342512 + | FAD dependent oxidoreductase Cphy_1897 2342552 - 2342944 + | hypothetical protein TERM 2661 2343102 - 2343114 + G 70 -9.1 -3.10012 | GGGTCATCGGATTAT GCCAC CAG GTGGC TTGCCTACTGCACTT Cphy_1898 2342968 - 2343189 + | hypothetical protein Cphy_1899 2343248 - 2344012 + | 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein Cphy_1900 2344670 - 2344104 - | phosphoglycerate mutase TERM 2662 2344310 - 2344321 + g 80 -5.8 -4.91778 | overlap 2344309 CCTCCTCGTAAGATT CTCC ATCG GGAG TTTCTTTTGTATTTC Cphy_1901 2345177 - 2345689 + | GCN5-related N-acetyltransferase Cphy_1902 2345729 - 2346607 + | LysR family transcriptional regulator Cphy_1903 2347164 - 2346604 - | chromate transporter Cphy_1904 2347772 - 2347161 - | chromate transporter TERM 2663 2347306 - 2347323 + g 70 -3.4 -5.03145 | CCAATATAGATATAA CGTTTG GTTTTG CAGACG TTTTTTGCAAGATTA Cphy_1905 2348023 - 2348664 + | hypothetical protein Cphy_1906 2348856 - 2349776 + | hypothetical protein Cphy_1907 2350016 - 2351425 + | major facilitator transporter TERM 2664 2351531 - 2351568 + T 100 -16.7 -5.28481 | gap 1, opp_overlap 2351531 AATAAAACCCAAAAA GGTATGAAACCAACTTTA TCT TAAAGT-GGTTTCATACC TTTTTTAGTTCGGTG TERM 2665 2351568 - 2351531 - T 100 -16.7 -4.91084 | gap 1, opp_overlap 2351531 AATAAAACCCAAAAA GGTATGAAACCAACTTTA TCT TAAAGT-GGTTTCATACC TTTTTTAGTTCGGTG Cphy_1908 2353729 - 2351801 - | membrane protein-like protein TERM 2666 2353660 - 2353650 - G 75 -5.4 -4.84359 | overlap 2353653 TCATTTTTAGAAAAA GTAG TAC CTAC ATAGCAGATACCTCC Cphy_1909 2355821 - 2353743 - | hypothetical protein TERM 2667 2355127 - 2355137 + g 95 -8.2 -4.84311 | opp_overlap 2355127 CCAAGTTGTAGTACA GCGC TTA GCGC TTTTGTTATATAAGA TERM 2668 2355902 - 2355890 - H 91 -7.7 -5.1523 | GTTATAACACAAAAA TGACC AAT GGTCA ATAATGAATTTTAAT Cphy_1910 2356046 - 2356669 + | TetR family transcriptional regulator TERM 2669 2356694 - 2356741 + F 100 -16.7 -5.24796 | opp_overlap 2356694 TCTAAAAATGTGAAA GGCTTTGTAGATAGTTCGAAT AGAATC ATTCGGATTATCTATAAAGCC TTTTTGTTATATAGG TERM 2670 2356741 - 2356694 - f 90 -10.8 -3.8046 | opp_overlap 2356694 TCTAAAAATGTGAAA GGCTTTGTAGATAGTTCGAATA GAAT CATTCGGATTATCTATAAAGCC TTTTTGTTATATAGG Cphy_1911 2356960 - 2358816 + | hypothetical protein TERM 2671 2359088 - 2359102 + G 90 -2.8 -5.99154 | overlap 2359079 TTTTTAGAAAGAAGA GCATGG TTT TTATGC TTTTTTTCTTTGATA Cphy_1912 2358995 - 2360608 + | apolipoprotein N-acyltransferase TERM 2672 2360679 - 2360630 - f 100 -6.6 -5.61596 | gap 1, opp_overlap 2360631 2360632 2360633, overlap 2360631 2360632 ACTGCTATAAAAAAA TCCCCCCCTTATGGTAGAACATT TATAT AAC-CTCTACCATAAGGGGGATG TTTCTATAGCAAGCC TERM 2673 2360678 - 2360631 - f 87 -10.1 -3.95873 | gap 1, opp_overlap 2360631 2360632 2360633, overlap 2360630 2360632 CTGCTATAAAAAAAT CCCCCCCTTATGGTAGAACATT TATAT AAC-CTCTACCATAAGGGGGAT GTTTCTATAGCAAGC TERM 2674 2360632 - 2360677 + F 73 -7.7 -3.61232 | opp_overlap 2360631 2360630 2360632, overlap 2360631 2360633 TGCTATAAAAAAATC CCCCCCTTATGGTAGAA CATTTATATAAC CTCTACCATAAGGGGGA TGTTTCTATAGCAAG TERM 2675 2360677 - 2360632 - f 100 -13.6 -2.96801 | gap 1, opp_overlap 2360632 2360631 2360633, overlap 2360631 2360630 TGCTATAAAAAAATC CCCCCCTTATGGTAGAACATT TATAT AAC-CTCTACCATAAGGGGGA TGTTTCTATAGCAAG TERM 2676 2360633 - 2360676 + F 82 -11.2 -2.76418 | opp_overlap 2360632 2360631 2360630, overlap 2360632 2360631 GCTATAAAAAAATCC CCCCCTTATGGTAGAA CATTTATATAAC CTCTACCATAAGGGGG ATGTTTCTATAGCAA Cphy_1913 2360855 - 2361139 + | hypothetical protein TERM 2677 2361837 - 2361857 + G 73 -6.3 -4.44392 | opp_overlap 2361837 2361839 TCATATGAAAAACAT TATTTGTTT ATA AAACAAGTA TTTCGTTTTTATTCT Cphy_1914 2361132 - 2362028 + | hypothetical protein TERM 2678 2362514 - 2362498 - g 73 -6.7 -4.29981 | opp_overlap 2362497 2362498 2362501 GAAAGAGATTCAAAA TAACAAT AAA ATTGTTA GTTCTATCTATTTTT Cphy_1915 2362169 - 2364496 + | AraC family transcriptional regulator TERM 2679 2364521 - 2364559 + F 100 -8.4 -6.02546 | opp_overlap 2364521 TTTATTTGTGCAAAA TATTCATAAATCCAAGTT GTT AAATTGGTTTTATGGATA TTTTTTTTGATTTCA TERM 2680 2364722 - 2364708 - f 75 -5 -4.96646 | overlap 2364709 TTATATAATCAAAAA CGATAC GTG GTATCA AAAGTGATTATTTAC TERM 2681 2365201 - 2365187 - g 73 -5.8 -4.4846 | overlap 2365183 GAAGTCAAGAATAAA TACTTT AAG AAAGTA ACACAAACCTTAATT Cphy_1916 2364818 - 2365780 + | binding-protein-dependent transport systems inner membrane component Cphy_1917 2365793 - 2366710 + | binding-protein-dependent transport systems inner membrane component Cphy_1918 2366768 - 2368441 + | extracellular solute-binding protein TERM 2682 2368999 - 2368946 - f 89 -11.2 -3.6014 | opp_overlap 2368959 2368962, overlap 2368938 2368944 AAAAAAGTAATAAGA TTATAATACCATGTAACCCTCCTG TTTTTT CAGGGGGGTTATGTGGTATCACAA AATAAATACGAAAGT TERM 2683 2368959 - 2368986 + F 88 -12.1 -2.85351 | opp_overlap 2368946 2368944, overlap 2368962 GATTATAATACCATG TAACCCTCCTG TTTTTT CAGGGGGGTTA TGTGGTATCACAAAA TERM 2684 2368962 - 2368983 + F 82 -9.4 -3.57651 | opp_overlap 2368946 2368944, overlap 2368959 TATAATACCATGTAA CCCTCCTG TTTTTT CAGGGGGG TTATGTGGTATCACA Cphy_1919 2369079 - 2370116 + | glycosy hydrolase family protein TERM 2685 2370274 - 2370288 + G 78 -9.2 -3.57561 | GGTGGATTCACGCTT CCTGGC GAA GCCGGG TTTGAGAAGTTAACA Cphy_1920 2370232 - 2372400 + | hypothetical protein TERM 2686 2372565 - 2372542 - g 95 -8.2 -4.71828 | AGGGGATGAAGAAAA GCAGTTTCTG TTAT CAGAAATTGC AAAGTGTCCTAATCC Cphy_1921 2372501 - 2372746 + | hypothetical protein TERM 2687 2373102 - 2373081 - f 83 -5.8 -5.27399 | opp_overlap 2373081 TAATATATGAAAAAA CCCAAGGC TTATTG GCTTTGGG TTTTTTGCGTCTATA TERM 2688 2373081 - 2373102 + F 95 -8.7 -5.14477 | opp_overlap 2373081 TAATATATGAAAAAA CCCAAGGCT TATT GGCTTTGGG TTTTTTGCGTCTATA TERM 2689 2374601 - 2374613 + G 71 -4.9 -4.63218 | opp_overlap 2374592 2374588 2374589 2374596 2374601 AACTCAGATATAAAA TATCT GGA AGATA TTTTCTTGGAAAAGC TERM 2690 2374613 - 2374601 - g 71 -4.9 -4.62471 | opp_overlap 2374601, overlap 2374592 2374588 2374589 2374596 AACTCAGATATAAAA TATCT GGA AGATA TTTTCTTGGAAAAGC Cphy_1922 2373128 - 2374690 + | ABC transporter related TERM 2691 2375005 - 2374955 - f 100 -15.8 -2.83012 | opp_overlap 2374961 2374962, overlap 2374942 2374957 2374962 2374972 2374981 AATTCCATTATGATA TAGGAAATTCCTATAAATATAGGA AAT TCCTATAAATATAGGAAATTCCTA TAAATATAGGAATGA TERM 2692 2375003 - 2374957 - f 100 -14 -2.96216 | opp_overlap 2374961 2374962, overlap 2374942 2374955 2374962 2374972 2374981 TTCCATTATGATATA GGAAATTCCTATAAATATAGGA AAT TCCTATAAATATAGGAAATTCC TATAAATATAGGAAT TERM 2693 2375017 - 2374962 - f 100 -16.6 -3.89956 | opp_overlap 2374962 2374961, overlap 2374942 2374957 2374955 2374972 2374981 TTATGATATAGGAAA TTCCTATAAATATAGGAAATTCCTAT AAAT ATAGGAAATTCCTATAAATATAGGAA TGATAAAGGTTATAC TERM 2694 2374962 - 2374998 + F 82 -11.1 -2.57026 | opp_overlap 2374942 2374957 2374955 2374962 2374972 2374981, overlap 2374961 TTATGATATAGGAAA TTCCTATAAATATAGGA AAT TCCTATAAATATAGGAA ATTCCTATAAATATA TERM 2695 2375007 - 2374972 - f 100 -13.6 -3.91072 | opp_overlap 2374962 2374961, overlap 2374942 2374957 2374955 2374962 2374981 GGAAATTCCTATAAA TATAGGAAATTCCTAT AAAT ATAGGAAATTCCTATA AATATAGGAATGATA TERM 2696 2375017 - 2374981 - f 93 -11.1 -3.98915 | opp_overlap 2374962 2374961, overlap 2374942 2374957 2374955 2374972 2374962 TATAAATATAGGAAA TTCCTATAAATATAGGA AAT TCCTATAAATATAGGAA TGATAAAGGTTATAC TERM 2697 2375217 - 2375259 + F 70 -8 -3.08046 | gap 1, opp_overlap 2375218 2375222, overlap 2375218 CAAATGAACCAATAA ACTGATCTATGACAGATGG AGATTA CTATCTGTCATAGAT-AGA GTTTTAACATAAAGA TERM 2698 2375258 - 2375218 - f 89 -9.3 -4.37247 | gap 1, opp_overlap 2375217 2375218, overlap 2375222 AAATGAACCAATAAA CTGATCTATGACAGATGG AGATTA CTATCTGTCATAGAT-AG AGTTTTAACATAAAG TERM 2699 2375218 - 2375260 + F 79 -8 -4.13767 | gap 1, opp_overlap 2375218 2375222, overlap 2375217 AAATGAACCAATAAA CT-GATCTATGACAGATGG AGATTA CTATCTGTCATAGATAGAG TTTTAACATAAAGAG TERM 2700 2375255 - 2375222 - f 82 -11.2 -2.78354 | opp_overlap 2375217 2375218, overlap 2375218 GAACCAATAAACTGA TCTATGACAGATGG AGATTA CTATCTGTCATAGA TAGAGTTTTAACATA TERM 2701 2375487 - 2375475 - g 78 -7.7 -4.32131 | TGAAAATAAATTAAA TGCAG ATA CTGCA AAGTTAGCTCATGGT Cphy_1923 2375371 - 2376411 + | D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding Cphy_1924 2376426 - 2376812 + | desulfoferrodoxin ferrous iron-binding region TERM 2702 2377040 - 2376999 - T 100 -6.7 -5.79588 | gap 1, opp_overlap 2376999 TTAAAATTAAAAAAA GGGTGATGTATCAT-GTAAT AAA AATACTAAGATGCATCACCC TTTTTGAATCAATGG TERM 2703 2376999 - 2377040 + T 90 -8.9 -4.67353 | gap 1, opp_overlap 2376999 TTAAAATTAAAAAAA GGGTGATGTATCAT-GTAAT AAA AATACTAAGATGCATCACCC TTTTTGAATCAATGG Cphy_1925 2378367 - 2377225 - | sodium ion-translocating decarboxylase, beta subunit TERM 2704 2377322 - 2377345 + g 76 -6 -4.71186 | ATTAATAAGTGGTTG GATGGATCTT CTTT GAGACCCATC TTTTGTATTACTCGT TERM 2705 2380450 - 2380473 + G 73 -3.1 -5.17576 | TCTCCTGGTTCCACT GGTGGTGGT ATCAAG ACAACTACC TTTTTTACATTAATA Cphy_1927 2379565 - 2380857 + | H(+)-transporting two-sector ATPase Cphy_1928 2380934 - 2381605 + | TrkA domain-containing protein TERM 2706 2381706 - 2381682 - T 100 -11.6 -5.61596 | opp_overlap 2381682 ATTGTTATAAAAAAA GACAATCAGT TTTTG ACTGATTGTC TTTTTTTTGATTGCG TERM 2707 2381682 - 2381706 + T 100 -12.3 -5.95166 | opp_overlap 2381682 ATTGTTATAAAAAAA GACAATCAGTT TTT GACTGATTGTC TTTTTTTTGATTGCG TERM 2708 2381712 - 2381742 + T 90 -12.6 -3.08679 | overlap 2381715 2381717 ACTGATTGTCTTTTT TTTGATTGCGCCCA GCA TGGGCGCAATCTCA TCTTAGGTAAGAAGG TERM 2709 2381715 - 2381739 + T 100 -18.7 -2.75992 | overlap 2381712 2381717 GATTGTCTTTTTTTT GATTGCGCCCA GCA TGGGCGCAATC TCATCTTAGGTAAGA TERM 2710 2381717 - 2381737 + T 100 -15.5 -2.92522 | overlap 2381715 2381712 TTGTCTTTTTTTTGA TTGCGCCCA GCA TGGGCGCAA TCTCATCTTAGGTAA Cphy_1929 2384720 - 2382327 - | glycosyltransferase 36 Cphy_1930 2385034 - 2385786 + | toxin secretion/phage lysis holin TERM 2711 2385839 - 2385876 + T 90 -10.1 -4.05848 | gap 1, opp_overlap 2385838 2385837 2385841 2385849, overlap 2385841 GAAACGTTAACAAGG GAGCCCAGA-AGATTTAG AAT TTAAATCTATCTGGGCTA TTTGATTATATAGTT TERM 2712 2385841 - 2385874 + T 100 -12.7 -3.61097 | gap 1, opp_overlap 2385838 2385837 2385841 2385849, overlap 2385839 AACGTTAACAAGGGA GCCCAGA-AGATTTAG AAT TTAAATCTATCTGGGC TATTTGATTATATAG TERM 2713 2385874 - 2385841 - T 87 -12 -2.66373 | gap 1, opp_overlap 2385841 2385839, overlap 2385838 2385837 2385849 AACGTTAACAAGGGA GCCCAGA-AGATTTA GAATT TAAATCTATCTGGGC TATTTGATTATATAG Cphy_1931 2387113 - 2385890 - | argininosuccinate synthase Cphy_1932 2387374 - 2388042 + | phosphatase TERM 2714 2388413 - 2388385 - g 82 -6.7 -5.00895 | overlap 2388390 2388406 CGTAGCATACAAAAA CCAAATTCTTGGA AAA CCCAAGAATGAGG ATCATGCGAAGGAAA TERM 2715 2388408 - 2388390 - g 86 -8.2 -4.40526 | overlap 2388385 2388406 CATACAAAAACCAAA TTCTTGGA AAA CCCAAGAA TGAGGATCATGCGAA Cphy_1933 2388158 - 2388751 + | maf protein TERM 2716 2388824 - 2388789 - T 100 -14.3 -4.88736 | gap 1, opp_overlap 2388789 GATGATGTATAAAAA GGCAGTCTATACCGTA TGAAG TA-GGTATAGACTGCC TTTTTAATTCGCTAA TERM 2717 2388789 - 2388824 + T 100 -15 -4.88407 | gap 1, opp_overlap 2388789 GATGATGTATAAAAA GGCAGTCTATACCGTAT GAA GTA-GGTATAGACTGCC TTTTTAATTCGCTAA Cphy_1934 2390790 - 2388859 - | alpha amylase catalytic region Cphy_1935 2392257 - 2390872 - | sugar (glycoside-Pentoside-hexuronide) transporter TERM 2718 2391718 - 2391704 - G 74 -4.2 -5.00412 | overlap 2391706 AAAGAGAAGTAAAAA TATGCC TTT GGCAAA CTGTCGAGGGAAGTA TERM 2719 2391716 - 2391706 - G 70 -6.8 -4.09586 | overlap 2391704 AGAGAAGTAAAAATA TGCC TTT GGCA AACTGTCGAGGGAAG Cphy_1936 2394713 - 2392257 - | glycoside hydrolase clan GH-D TERM 2720 2393279 - 2393295 + g 71 -8.7 -3.18582 | opp_overlap 2393267 2393264 2393278 2393275 CAAGAACCAACTGAT TCCTGCC ATA GGTAGGA TTCCTACGTGGCGTA TERM 2721 2393425 - 2393445 + g 78 -4 -5.38326 | TTACGGGAAAATGCG GATATTCC ATGAG GGAATTTC TTTTTATTTACTTCA Cphy_1937 2395993 - 2394710 - | glycoside hydrolase family protein TERM 2722 2396258 - 2396241 - R 100 -6.3 -6.11243 | opp_overlap 2396241 2396244 AGGGAATAAAAAAAA GACCACT ATAA AGTGATC TTTTCATTGATGCTA Cphy_1938 2396475 - 2396275 - | cold-shock DNA-binding domain-containing protein TERM 2723 2396573 - 2396522 - H 100 -11.3 -5.92399 | TAATAAAATAAAAAA TCACATACTTTTGTAAATCATCA ATGCAA TAATGACTTACGAAAATATGTGA AATCAAAACTTTATT Cphy_1939 2397078 - 2397308 + | hypothetical protein TERM 2724 2397489 - 2397508 + F 100 -9.4 -5.93809 | overlap 2397484 TACATGTTCCTTGGC TACCAACT ATTT AGTTGGTA TTTTTTTTATGCAGA Cphy_1940 2397716 - 2398444 + | SCP-like extracellular TERM 2725 2398501 - 2398531 + F 95 -9.2 -5.11033 | gap 1, opp_overlap 2398501 TATAAACTTGAAAAA CAGCAGAAAATCC ATAATC GGATTT-CTGCTG TTTTTTCAGATTATA TERM 2726 2398531 - 2398501 - f 93 -9.9 -4.72486 | gap 1, opp_overlap 2398501 TATAAACTTGAAAAA CAGCAGAAAATCCA TAAT CGGATTT-CTGCTG TTTTTTCAGATTATA TERM 2727 2399004 - 2398994 - g 78 -4 -5.40072 | opp_overlap 2398994, overlap 2398997 GTCGCTGGAAAAAAA TTAG AAT CTAA TTCTCTAACCGCTTT Cphy_1941 2398748 - 2399455 + | phospholipid/glycerol acyltransferase Cphy_1942 2399570 - 2399968 + | hypothetical protein Cphy_1943 2401404 - 2400010 - | chitinase TERM 2728 2401677 - 2401667 - R 85 -2.6 -6.20267 | opp_overlap 2401667 TGAAAAACAAAAAAA TATT GTT AATA TTTTAAATAGGGATC TERM 2729 2402090 - 2402138 + r 100 -16.4 -3.34005 | opp_overlap 2402096 2402101, overlap 2402096 TAGATTATTTAAGCT CCAAAATCAAACGACTTATCCT CATAA AAGATAAGTCGTTTGATTTTAG TTATAACCATTAGTT TERM 2730 2402096 - 2402132 + r 100 -14 -4.48987 | opp_overlap 2402096 2402101, overlap 2402090 ATTTAAGCTCCAAAA TCAAACGACTTATCCT CATAA AAGATAAGTCGTTTGA TTTTAGTTATAACCA TERM 2731 2402132 - 2402096 - R 100 -16.9 -4.1466 | opp_overlap 2402090 2402096, overlap 2402101 ATTTAAGCTCCAAAA TCAAACGACTTATCCTC ATA AAAGATAAGTCGTTTGA TTTTAGTTATAACCA TERM 2732 2402127 - 2402101 - R 100 -11 -4.20136 | opp_overlap 2402096 2402090, overlap 2402096 AGCTCCAAAATCAAA CGACTTATCCTC ATA AAAGATAAGTCG TTTGATTTTAGTTAT Cphy_1944 2402717 - 2402148 - | hypothetical protein TERM 2733 2402351 - 2402365 + g 71 -7.2 -3.91897 | ACCATGATTTCACCA TTGATG TTA CATCAA TTTCTGAATAGCCAA Cphy_1945 2402848 - 2403159 + | hypothetical protein TERM 2734 2403207 - 2403164 - f 100 -21.5 -2.6563 | opp_overlap 2403167 2403172, overlap 2403167 2403172 TCGCTCAATAATTTA TAATAAAAGATACAGCCAG TTAAAT CTGGCTGTATCTTTTATTA AATTGCAAACATTTC TERM 2735 2403204 - 2403167 - f 100 -18.8 -3.47751 | opp_overlap 2403167 2403172, overlap 2403164 2403172 CTCAATAATTTATAA TAAAAGATACAGCCAG TTAAAT CTGGCTGTATCTTTTA TTAAATTGCAAACAT TERM 2736 2403167 - 2403204 + F 100 -18.8 -3.17194 | opp_overlap 2403164 2403167 2403172, overlap 2403172 CTCAATAATTTATAA TAAAAGATACAGCCAG TTAAAT CTGGCTGTATCTTTTA TTAAATTGCAAACAT TERM 2737 2403172 - 2403199 + F 100 -14.3 -4.72029 | opp_overlap 2403167 2403164 2403172, overlap 2403167 TAATTTATAATAAAA GATACAGCCAG TTAAAT CTGGCTGTATC TTTTATTAAATTGCA TERM 2738 2403199 - 2403172 - f 100 -14.3 -4.80959 | opp_overlap 2403172 2403167, overlap 2403167 2403164 TAATTTATAATAAAA GATACAGCCAG TTAAAT CTGGCTGTATC TTTTATTAAATTGCA Cphy_1946 2403312 - 2403665 + | hypothetical protein Cphy_1947 2404271 - 2403747 - | hypothetical protein TERM 2739 2403877 - 2403920 + g 83 -7.1 -4.74787 | gap 1, opp_overlap 2403884 2403892, overlap 2403878 2403885 2403892 AAAGGGACTGACCTG ATTAGAATAAAAAAACAGAC TACTT GTCTGTTT-TTTATTCTGAC TTTATTTATATTTAT TERM 2740 2403878 - 2403919 + g 80 -10.6 -3.42432 | gap 1, opp_overlap 2403884 2403892, overlap 2403877 2403885 2403892 AAGGGACTGACCTGA TTAGAATAAAAAAACAGAC TACTT GTCTGTTT-TTTATTCTGA CTTTATTTATATTTA TERM 2741 2403892 - 2403906 + g 88 -5.7 -5.56673 | opp_overlap 2403884 2403892, overlap 2403885 2403878 2403877 ATTAGAATAAAAAAA CAGAC TACTT GTCTG TTTTTTATTCTGACT TERM 2742 2403906 - 2403892 - G 91 -5.7 -5.89921 | opp_overlap 2403892 2403885 2403878 2403877, overlap 2403884 ATTAGAATAAAAAAA CAGAC TACTT GTCTG TTTTTTATTCTGACT TERM 2743 2404405 - 2404418 + H 72 -2.5 -5.45726 | opp_overlap 2404405 2404417 AATATTAATACGTAA TATTT CTTA AAATA TTTTTTTAAAATATA TERM 2744 2404655 - 2404686 + H 91 -8.2 -4.93968 | gap 1, opp_overlap 2404655 AATATAAGCAAAAAA CGAAAATACCC-TAT ATA GTACGGGTGTTTTCG TTTTTGGTTATGGGT TERM 2745 2404686 - 2404655 - H 86 -6 -5.3671 | gap 1, opp_overlap 2404655 AATATAAGCAAAAAA CGAAAATACCCTATA TAG TAC-GGGTGTTTTCG TTTTTGGTTATGGGT TERM 2746 2404948 - 2404937 - g 77 -3 -5.4492 | opp_overlap 2404937 TACATAGATAAAAAA TACT CGGA AGTA TTTCAAAATATGTTT TERM 2747 2405658 - 2405648 - g 71 -4.6 -4.82901 | CGTGTTTTAGAAAAA GGGA TGC CCCC TGAAACTCGCTGGGT Cphy_1948 2404814 - 2405854 + | N-acetyl-gamma-glutamyl-phosphate reductase TERM 2748 2406377 - 2406356 - g 89 -10.3 -4.14739 | overlap 2406359 GGAGTTATCGGAAAA CAATTACCT ATAG AGGTAATTG AAGCGGGTTCTAAGA Cphy_1949 2406002 - 2407222 + | arginine biosynthesis bifunctional protein ArgJ Cphy_1950 2407322 - 2408224 + | acetylglutamate kinase TERM 2749 2409077 - 2409103 + G 76 -4.4 -5.13137 | CTTATGGTGGGAACC CTTTGGCTACAG CAG CTGTTTCTAAAG TTTTTGATTTATTTG Cphy_1951 2408227 - 2409423 + | acetylornithine and succinylornithine aminotransferase TERM 2750 2409497 - 2409543 + F 100 -16.8 -3.44051 | AATTTTTAGAGTCAG CAGGCTGTAAGAGTGGAAGA AATTAAA TATACCACTCTTACAGCCTG TTGTCATGATAGCGC Cphy_1952 2409783 - 2410220 + | hypothetical protein TERM 2751 2410236 - 2410250 + F 74 -5.6 -4.93296 | opp_overlap 2410236 2410231 2410229 TACAATACGAGAAAA GTACGC TTC GCGAAC TTTTTCTAGTCATAA TERM 2752 2410250 - 2410236 - f 71 -5.6 -4.56629 | opp_overlap 2410236, overlap 2410231 2410229 TACAATACGAGAAAA GTACGC TTC GCGAAC TTTTTCTAGTCATAA Cphy_1953 2410384 - 2411100 + | helix-hairpin-helix repeat-containing competence protein ComEA Cphy_1954 2411187 - 2411876 + | two component transcriptional regulator TERM 2753 2411921 - 2411947 + GF 93 -10.9 -4.09864 | overlap 2411940 TGCTGATTGCACTGA TGGTAGTCGGA TTAGT TCCGGCTGCCA TTTTAACGGCTGCCT Cphy_1955 2411833 - 2413287 + | integral membrane sensor signal transduction histidine kinase Cphy_1956 2413339 - 2414268 + | hypothetical protein TERM 2754 2414435 - 2414467 + F 90 -9.3 -4.72556 | opp_overlap 2414435 AAACGATTATACAAA GGAAGAATGGAGT GGTATAA GCTCTATTCTTCC TTTTATGCTTTTTAC Cphy_1957 2414887 - 2417577 + | DNA internalization-related competence protein ComEC/Rec2 Cphy_1958 2418081 - 2419013 + | Mg2 transporter protein CorA family protein TERM 2755 2419844 - 2419870 + G 78 -3.8 -5.29445 | opp_overlap 2419846 2419847 2419851, overlap 2419846 2419847 GTGCAGATTATATTA AAGGAAACAAAA AGG TTTTGTTTCATG TTTTTATTATTACAA TERM 2756 2419846 - 2419868 + G 73 -6.4 -4.27297 | opp_overlap 2419846 2419847 2419851, overlap 2419844 2419847 GCAGATTATATTAAA GGAAACAAAA AGG TTTTGTTTCA TGTTTTTATTATTAC TERM 2757 2419867 - 2419847 - g 75 -9.9 -2.92114 | opp_overlap 2419847 2419846 2419844, overlap 2419846 2419851 CAGATTATATTAAAG GAAACAAAA AGG TTTTGTTTC ATGTTTTTATTATTA TERM 2758 2419847 - 2419867 + G 77 -9.9 -3.14752 | opp_overlap 2419846 2419847 2419851, overlap 2419846 2419844 CAGATTATATTAAAG GAAACAAAA AGG TTTTGTTTC ATGTTTTTATTATTA Cphy_1959 2419168 - 2420232 + | hypothetical protein TERM 2759 2420426 - 2420436 + G 70 -6.8 -4.00589 | opp_overlap 2420425, overlap 2420417 GGTATTCAAATTGAT TCGC TTT GCGA TTTAGTATGTTTTGG Cphy_1960 2420216 - 2420839 + | CDP-alcohol phosphatidyltransferase TERM 2760 2420980 - 2420928 - f 83 -10.9 -2.83073 | opp_overlap 2420928 2420939, overlap 2420933 2420939 ATTGTTATGAATAAT TTAAAGAAAAATCCTTCGTCTAA AGTATAG TTAGTCGAAGGATTTTACTATAA TTGCTAAGGTATGGA TERM 2761 2420928 - 2420980 + F 84 -10.9 -3.17763 | opp_overlap 2420928 2420933 2420939, overlap 2420939 ATTGTTATGAATAAT TTAAAGAAAAATCCTTCGTCTAA AGTATAG TTAGTCGAAGGATTTTACTATAA TTGCTAAGGTATGGA TERM 2762 2420975 - 2420933 - f 90 -10.8 -3.8646 | opp_overlap 2420928 2420939, overlap 2420928 2420939 TATGAATAATTTAAA GAAAAATCCTTCGTCTAA AGTATAG TTAGTCGAAGGATTTTAC TATAATTGCTAAGGT TERM 2763 2420939 - 2420969 + F 85 -8.4 -4.39287 | opp_overlap 2420933 2420928 2420939, overlap 2420928 TAATTTAAAGAAAAA TCCTTCGTCTAA AGTATAG TTAGTCGAAGGA TTTTACTATAATTGC TERM 2764 2420969 - 2420939 - f 100 -8.4 -5.33026 | opp_overlap 2420939 2420928, overlap 2420933 2420928 TAATTTAAAGAAAAA TCCTTCGTCTAA AGTATAG TTAGTCGAAGGA TTTTACTATAATTGC Cphy_1961 2421004 - 2421870 + | phosphatidylserine decarboxylase-related Cphy_1962 2421915 - 2422892 + | DNA polymerase III, delta subunit TERM 2765 2422986 - 2423019 + F 100 -10.5 -5.12068 | gap 1, opp_overlap 2422985 2422986 2422988 TAAAAGTTCATTAAG TACCTCGAG-CAAAAG AGT CTTTTGTTTCGGGGTA TTTTTGTTACATATG Cphy_1963 2423286 - 2423597 + | PadR-like family transcriptional regulator Cphy_1964 2423677 - 2424645 + | hypothetical protein TERM 2766 2425225 - 2425208 - g 70 -2.7 -5.16237 | opp_overlap 2425208 AAGGTTATTAAAAAA GAAACGA ACTT TGGTTTC TTTAATTACATCAAA Cphy_1965 2424758 - 2426128 + | membrane protein-like protein TERM 2767 2426216 - 2426177 - T 87 -8.6 -4.34402 | opp_overlap 2426177 2426179 TTTGTGACATGAAAA GATACCTTGAAATGGACT TTAC AGACCAAATCAAGGTACC TTTTTTGTGCTGTAT TERM 2768 2426177 - 2426216 + T 88 -6.4 -5.35459 | opp_overlap 2426177, overlap 2426179 TTTGTGACATGAAAA GATACCTTGAAATGGACT TTAC AGACCAAATCAAGGTACC TTTTTTGTGCTGTAT TERM 2769 2426375 - 2426351 - T 73 -8 -3.38786 | TATATGTAATACCAA TTAGCATCAG AATAA CTGATACTAA AAAAGTTGGAATAGA Cphy_1966 2427266 - 2426619 - | methyltransferase type 11 TERM 2770 2427626 - 2427647 + H 100 -7.3 -5.95946 | opp_overlap 2427620 GTTCATAATGATTAG TCCTAATCC TTCG GGGTTGGGA TTTTTTTGTTATTAA TERM 2771 2427727 - 2427741 + H 71 -8.6 -2.85069 | ACAAAAAACCCCACT GCAACT GAG AGTTGC TAATATTTCAAGCTT TERM 2772 2428238 - 2428249 + G 71 -4.4 -4.78149 | CCAGGACTTGTGATT GGTT GGGG AACC TTTTTGCCTTGTGCG Cphy_1967 2427815 - 2428621 + | XRE family transcriptional regulator TERM 2773 2428627 - 2428663 + F 86 -5.9 -5.33124 | opp_overlap 2428627 AAGAAATTGAGTAAA GGGTTGACATGCACGAT TTT ATATTGAATGTCAACTC TTTTATTTTGTTGTT TERM 2774 2428846 - 2428865 + F 79 -5 -5.28942 | CTGTGATAAACTATG GCACTTAT ATTT GTAGGTGC TTTTTGTTTGCACTC Cphy_1968 2429017 - 2430558 + | von Willebrand factor type A Cphy_1969 2430571 - 2431221 + | hypothetical protein Cphy_1970 2431218 - 2432318 + | hypothetical protein Cphy_1971 2432490 - 2433596 + | toxic anion resistance family protein TERM 2775 2433611 - 2433640 + T 100 -9.5 -5.04385 | opp_overlap 2433611 ATGCACACAAAAAAA GAAGATATATCAT AATA GTGGTATATCTTC TTTTTTAAAAGTATA TERM 2776 2433640 - 2433611 - T 100 -6.6 -5.72616 | opp_overlap 2433611 ATGCACACAAAAAAA GAAGATATATCA TAATAG TGGTATATCTTC TTTTTTAAAAGTATA Cphy_1972 2434666 - 2433740 - | hypothetical protein TERM 2777 2434002 - 2433985 - G 73 -5.6 -4.57353 | CTGTACCACATAAAA CCATTC CAGTAT GAATGG CAGTTCCTTTATGTG Cphy_1973 2434856 - 2435425 + | ThiJ/PfpI domain-containing protein Cphy_1974 2435446 - 2435997 + | nitroreductase TERM 2778 2436065 - 2436100 + F 91 -7.8 -5.28315 | overlap 2436099 TAAAGACATTAAAAA GATTATCTTGTAATGT AGAA ACATTATGAGGTAGTC TTTTTTAAATTTTAT Cphy_1975 2436461 - 2438653 + | Ig domain-containing protein TERM 2779 2438707 - 2438750 + T 87 -11.4 -3.02263 | gap 1, opp_overlap 2438706 2438707 2438712, overlap 2438712 ATAGTTGAAGAAGAG TAAAAGTCTCAGA-TTCTTAA AAA TAAAGAGTTCTGAGACTTTTA TGTTGAAAAAACTAT TERM 2780 2438750 - 2438707 - T 72 -9.2 -2.64313 | gap 1, opp_overlap 2438707 2438712, overlap 2438706 2438712 ATAGTTGAAGAAGAG TAAAAGTCTCAG-ATTCTTAA AAA TAAAGAGTTCTGAGACTTTTA TGTTGAAAAAACTAT TERM 2781 2438712 - 2438745 + T 79 -6.9 -4.66537 | gap 1, opp_overlap 2438712 2438707 2438706, overlap 2438707 TGAAGAAGAGTAAAA GTCTCAGA-TTCTTAA AAA TAAAGAGTTCTGAGAC TTTTATGTTGAAAAA Cphy_1976 2440587 - 2438851 - | methyl-accepting chemotaxis sensory transducer TERM 2782 2440970 - 2441015 + r 100 -13.6 -5.02502 | opp_overlap 2440973, overlap 2440973 GGATTTAACTGAAGT GAACCCCTTTTGTTAGACAA AAGATA TTGTCTAATGAAAGGGGTTA TTTTTATGTCATGTG TERM 2783 2441012 - 2440973 - R 85 -10.9 -3.20991 | opp_overlap 2440973 2440970 TTTAACTGAAGTGAA CCCCTTTTGTTAGACAA AAGATA TTGTCTAATGAAAGGGG TTATTTTTATGTCAT TERM 2784 2440973 - 2441012 + r 100 -15.3 -4.59846 | opp_overlap 2440973, overlap 2440970 TTTAACTGAAGTGAA CCCCTTTTGTTAGACAA AAGATA TTGTCTAATGAAAGGGG TTATTTTTATGTCAT Cphy_1977 2441819 - 2441154 - | ABC transporter related Cphy_1978 2443179 - 2441824 - | hypothetical protein TERM 2785 2443645 - 2443597 - R 71 -6.7 -4.11773 | opp_overlap 2443597 2443602, overlap 2443600 AAAGAGCCTGTAAAA GAAGCCAAAGAGTAGCTTTGATG TTT CTTCAATACCGCCGTTTGGCTTC TATCTGCAATAAAGC Cphy_1979 2444152 - 2443730 - | MarR family transcriptional regulator Cphy_1980 2446424 - 2444163 - | ABC transporter related TERM 2786 2445746 - 2445760 + g 90 -8.6 -4.42788 | TACGTGGAATCAGTC CCTCAT ACA ATGAGG TTTTATGCCATTCAG Cphy_1981 2447051 - 2447947 + | 5'-nucleotidase TERM 2787 2448015 - 2448040 + F 83 -6.9 -4.91573 | opp_overlap 2448016, overlap 2448016 TTATTTTATTTCTAA ACGGTAGTTTT AATC AAAGCTACCGC TTTTTAGTATGTTTT TERM 2788 2448039 - 2448016 - f 75 -8.2 -3.57462 | opp_overlap 2448015 2448016 TATTTTATTTCTAAA CGGTAGTTTT AATC AAAGCTACCG CTTTTTAGTATGTTT TERM 2789 2448016 - 2448039 + F 85 -10.4 -3.52503 | opp_overlap 2448016, overlap 2448015 TATTTTATTTCTAAA CGGTAGTTTT AATC AAAGCTACCG CTTTTTAGTATGTTT TERM 2790 2448149 - 2448180 + F 100 -7.4 -5.77632 | opp_overlap 2448153 TAAACAAAATATGTA TACACACTTTTATC AAGG GATTTAAGTGTGTA TTTTTTTATCATTTT Cphy_1982 2448335 - 2449126 + | hypothetical protein TERM 2791 2449156 - 2449141 - f 85 -9 -4.11404 | GTGATAGCAGATAAA CTTGCC TGTA GGCAAG TGAGAATATCCGCTT Cphy_1983 2449368 - 2450339 + | hypothetical protein Cphy_1984 2450413 - 2451300 + | ABC transporter related Cphy_1985 2451303 - 2452067 + | hypothetical protein TERM 2792 2452372 - 2452397 + F 76 -5.5 -5.00895 | opp_overlap 2452372 ATTAGGTATAAAAGA GAACCAAATTT TATT AGTTTTGGTTC TTTTTATATAATCCA TERM 2793 2452493 - 2452483 - g 85 -2.6 -5.87996 | TAAGCAATAAAAAAA TATT AAT AATA GATGATGAAGAAGAT TERM 2794 2453112 - 2453100 - g 72 -4.1 -4.89729 | GAGAAAATTGAAAAA GATCC ATC GAATC CGAAGCATATTCTTA Cphy_1986 2452455 - 2453177 + | two component transcriptional regulator TERM 2795 2453623 - 2453643 + G 75 -9.9 -2.92928 | opp_overlap 2453628, overlap 2453626 2453641 TCCATCTGACAAGGT TAAGAGAAA TGT TTTCTCTTA TGATGTTTATAATTT Cphy_1987 2453174 - 2454580 + | integral membrane sensor signal transduction histidine kinase TERM 2796 2454726 - 2454668 - f 100 -28.2 -4.46212 | opp_overlap 2454677 CTGCTCATGATAAAA TCTCTATAACACACTTTTTACACTTT TCATAAT AAAGTGTAAAAAGTGTGTTATAGAGA GTGGAATCAGTTCGC TERM 2797 2454677 - 2454717 + F 100 -17.3 -3.30124 | opp_overlap 2454668 ATAAAATCTCTATAA CACACTTTTTACACTTT TCATAAT AAAGTGTAAAAAGTGTG TTATAGAGAGTGGAA Cphy_1988 2455089 - 2456153 + | hypothetical protein TERM 2798 2456187 - 2456170 - f 70 -7.1 -3.70947 | CATAATACAAAGGAA TCATTCT ATGC AGAATGA AAATATAAAAAGGAT Cphy_1989 2456203 - 2456505 + | hypothetical protein TERM 2799 2457145 - 2457110 - g 76 -6.5 -4.36854 | GAAAGATAAGACAAA TAGAATTTTCATA TCAATACAAC TATGAAAATTCTA TCGAAGCTATCGAAG Cphy_1990 2456659 - 2457690 + | hypothetical protein Cphy_1991 2457833 - 2458630 + | hypothetical protein Cphy_1992 2458916 - 2459146 + | hypothetical protein TERM 2800 2459309 - 2459292 - g 73 -5.6 -4.63928 | ATATTACTGGAAAAA CTGCAA ATGAAG TTGCAG AATATGTAATTGAAT Cphy_1993 2459165 - 2459344 + | hypothetical protein Cphy_1994 2459615 - 2461003 + | radical SAM domain-containing protein Cphy_1995 2460981 - 2463056 + | hypothetical protein TERM 2801 2463233 - 2463218 - f 79 -4.8 -5.20216 | TATATTACCAAAAAA CTTTAA TGAT TTAAAG CGGCAATTTAAAAAA TERM 2802 2463318 - 2463335 + G 79 -4.9 -5.14163 | gap 1 GTAGTGACGATATGG GGTG-TAG CAA CTATCACC TTTTTCTTAATGAAT Cphy_1996 2463267 - 2464184 + | binding-protein-dependent transport systems inner membrane component TERM 2803 2464363 - 2464386 + G 85 -2.6 -5.92399 | TAGCTATGGCCAGCA TTATTGTAAT CGTG ATTATAATGA TTTTTTCTTTTATTG Cphy_1997 2464200 - 2465246 + | binding-protein-dependent transport systems inner membrane component TERM 2804 2465529 - 2465545 + G 74 -8.1 -3.82202 | opp_overlap 2465526 AATGCAAAAGATTCG TGGAAAT GAA ATTTCCA TTATATTTCAAGATC Cphy_1998 2465263 - 2466264 + | oligopeptide/dipeptide ABC transporter, ATPase subunit Cphy_1999 2466257 - 2467246 + | oligopeptide/dipeptide ABC transporter, ATPase subunit TERM 2805 2467272 - 2467258 - f 74 -5.8 -4.72863 | TTAAAGAAAGGAAAA TAGAAA TCA TTTCTA CACGAAGATTAGTAA TERM 2806 2468238 - 2468225 - g 70 -3.1 -5.04987 | AATATTTGCAAAAAA TCCAA ATTT CTGGA ATGCGAGTGCAGTTA Cphy_2000 2467518 - 2469170 + | extracellular solute-binding protein TERM 2807 2469625 - 2469614 - f 73 -4.4 -5.09221 | TATAATAAAAATAAA TCTG CCTG CAGA TGAAAAAATAATGTT TERM 2808 2470179 - 2470162 - g 77 -2.7 -5.43487 | AAATGATATAAAAAA GGTGATA AAAT TATTACC GAAGACACGACAGAC Cphy_2001 2469662 - 2471206 + | DEAD/DEAH box helicase domain-containing protein TERM 2809 2471228 - 2471238 + F 81 -4 -5.59962 | CTAGCTTTCTATCTT TCAT CCT ATGA TTTTTATTTGTTTTA Cphy_2002 2471352 - 2471648 + | YCII-related TERM 2810 2471668 - 2471718 + T 100 -14.2 -4.52669 | opp_overlap 2471673, overlap 2471673 ATTAAAAAATAGTGC AAAAACTGCGTCATGTATTGACTT TAA AAGCCATTACAAGACGCAGTTTTC TTTATTTCCATTATT TERM 2811 2471673 - 2471713 + T 100 -14.1 -5.18866 | opp_overlap 2471673, overlap 2471668 AAAATAGTGCAAAAA CTGCGTCATGTATTGACTT TAA AAGCCATTACAAGACGCAG TTTTCTTTATTTCCA TERM 2812 2471713 - 2471673 - T 100 -16.3 -4.69464 | opp_overlap 2471673 2471668 AAAATAGTGCAAAAA CTGCGTCATGTATTGACTT TAA AAGCCATTACAAGACGCAG TTTTCTTTATTTCCA Cphy_2003 2472706 - 2471732 - | NLP/P60 protein Cphy_2004 2473107 - 2474444 + | hypothetical protein TERM 2813 2474727 - 2474685 - T 83 -7 -4.92363 | opp_overlap 2474684 2474685 2474697 AAATAGTTATAAAAA GGTACCTCGATTTGGTTTGT AAA AAAAGCCATTTCAAGGTACC ATTATAATTCAGAAG Cphy_2005 2475289 - 2474846 - | large conductance mechanosensitive channel protein TERM 2814 2475160 - 2475150 - G 70 -5.4 -4.49556 | TGGCGAGTAAATAAA CCAA TGA TTGG TGAAAGTATGTTATC Cphy_2006 2475500 - 2476951 + | DEAD/DEAH box helicase domain-containing protein Cphy_2007 2477436 - 2479025 + | two component AraC family transcriptional regulator TERM 2815 2479779 - 2479766 - g 78 -3.9 -5.30155 | TGATCAATGAAAAAA CTTTA GAAG TAAAG GAATGTAAGGAAAGC Cphy_2008 2479036 - 2480793 + | multi-sensor signal transduction histidine kinase Cphy_2009 2480821 - 2481798 + | periplasmic binding protein/LacI transcriptional regulator TERM 2816 2481806 - 2481861 + F 100 -16.8 -3.11962 | gap 1, opp_overlap 2481816, overlap 2481816 AAGAATAATTGAATC CTAT-AGAAAAGGTTAAAAGGCTACTT CAA AAGTAGTTTTTTAACCTTTTTTCATAG ATTTATCTATTAAAA TERM 2817 2481850 - 2481816 - f 93 -10.2 -4.55118 | opp_overlap 2481816 2481806 GAATCCTATAGAAAA GGTTAAAAGGCTACTT CAA AAGTAGTTTTTTAACC TTTTTTCATAGATTT TERM 2818 2481816 - 2481850 + F 100 -14.6 -5.19261 | opp_overlap 2481816, overlap 2481806 GAATCCTATAGAAAA GGTTAAAAGGCTACTT CAA AAGTAGTTTTTTAACC TTTTTTCATAGATTT Cphy_2010 2481937 - 2483439 + | ABC transporter related Cphy_2011 2483454 - 2484440 + | monosaccharide-transporting ATPase Cphy_2012 2484588 - 2485658 + | periplasmic binding protein/LacI transcriptional regulator TERM 2819 2485683 - 2485724 + F 100 -19.1 -3.05268 | opp_overlap 2485683 2485690, overlap 2485685 2485690 TTAGAATAGAATTAA TACAAAAGGGAAGGTTCTT TAAA AGGAACCTTTCCTTTTGTA TGTTGCAGATGCTTC TERM 2820 2485724 - 2485683 - f 100 -14.7 -3.56569 | opp_overlap 2485683 2485685 2485690, overlap 2485690 TTAGAATAGAATTAA TACAAAAGGGAAGGTTCTT TAAA AGGAACCTTTCCTTTTGTA TGTTGCAGATGCTTC TERM 2821 2485685 - 2485722 + F 100 -17.3 -3.08073 | opp_overlap 2485683 2485690, overlap 2485683 2485690 AGAATAGAATTAATA CAAAAGGGAAGGTTCTT TAAA AGGAACCTTTCCTTTTG TATGTTGCAGATGCT TERM 2822 2485717 - 2485690 - f 83 -7 -4.74767 | opp_overlap 2485690 2485685 2485683, overlap 2485683 AGAATTAATACAAAA GGGAAGGTTCTT TAAA AGGAACCTTTCC TTTTGTATGTTGCAG TERM 2823 2485690 - 2485717 + F 100 -11.4 -4.67943 | opp_overlap 2485683 2485690, overlap 2485685 2485683 AGAATTAATACAAAA GGGAAGGTTCTT TAAA AGGAACCTTTCC TTTTGTATGTTGCAG TERM 2824 2486824 - 2486842 + G 70 -8.8 -3.09516 | TGATTTTTATGGGGC CGATGCCT ATA AGGCACCG TTCAATGCTACAACG Cphy_2013 2486327 - 2487589 + | proteinase inhibitor I4 serpin Cphy_2014 2487645 - 2488907 + | proteinase inhibitor I4 serpin TERM 2825 2488925 - 2488905 - f 100 -12.7 -3.20348 | opp_overlap 2488908, overlap 2488908 GTGATGAATATTGAA TAAGGGCTT TTA AAGCCCTTA TAAAATCCAATGCAT TERM 2826 2488908 - 2488922 + F 82 -10 -3.33162 | opp_overlap 2488908 2488905 ATGAATATTGAATAA GGGCTT TTA AAGCCC TTATAAAATCCAATG TERM 2827 2488922 - 2488908 - f 86 -10 -3.73872 | opp_overlap 2488908, overlap 2488905 ATGAATATTGAATAA GGGCTT TTA AAGCCC TTATAAAATCCAATG TERM 2828 2489325 - 2489302 - f 82 -9.6 -3.58533 | opp_overlap 2489302 CTATAAGCGTTTAAA GGTTTAAGCC CTAT GGCTTTAACC TTTTTTTATTCATGA TERM 2829 2489302 - 2489325 + F 100 -9.6 -5.84381 | opp_overlap 2489302 CTATAAGCGTTTAAA GGTTTAAGCC CTAT GGCTTTAACC TTTTTTTATTCATGA Cphy_2015 2489645 - 2490706 + | hypothetical protein Cphy_2016 2490733 - 2490981 + | hypothetical protein Cphy_2017 2491034 - 2491255 + | hypothetical protein TERM 2830 2491350 - 2491392 + F 78 -5.7 -4.77438 | AATTTAATTTGTTAA GAAAGCTCTTTGAAGTAAT ATTTA AATATTTCTCAGAGCTTTC TTTTTACTCATAGAT TERM 2831 2491717 - 2491775 + F 100 -13.8 -2.9302 | gap 1, opp_overlap 2491726 2491728 2491730 2491732 2491749, overlap 2491718 2491728 2491730 2491732 ATTAGTAAAATATAC CTTGACATATATAGATTATCGATATAT CATAAC ATATATCGATAATCTATATATGG-AGG GTTGTTATGATTGAG TERM 2832 2491767 - 2491726 - f 100 -16.4 -2.8937 | opp_overlap 2491717 2491718 2491728 2491730 2491732, overlap 2491728 2491730 2491732 2491749 ATATACCTTGACATA TATAGATTATCGATATAT CATAAC ATATATCGATAATCTATA TATGGAGGGTTGTTA TERM 2833 2491765 - 2491728 - f 100 -14.6 -2.99649 | opp_overlap 2491717 2491718 2491728 2491730 2491732, overlap 2491726 2491730 2491732 2491749 ATACCTTGACATATA TAGATTATCGATATAT CATAAC ATATATCGATAATCTA TATATGGAGGGTTGT TERM 2834 2491728 - 2491765 + F 100 -14.6 -2.88758 | opp_overlap 2491728 2491726 2491730 2491732 2491749, overlap 2491717 2491718 2491730 2491732 ATACCTTGACATATA TAGATTATCGATATAT CATAAC ATATATCGATAATCTA TATATGGAGGGTTGT TERM 2835 2491730 - 2491763 + F 100 -12.8 -2.99319 | opp_overlap 2491730 2491728 2491726 2491732 2491749, overlap 2491728 2491717 2491718 2491732 ACCTTGACATATATA GATTATCGATATAT CATAAC ATATATCGATAATC TATATATGGAGGGTT TERM 2836 2491763 - 2491730 - f 100 -12.8 -3.052 | opp_overlap 2491728 2491717 2491718 2491730 2491732, overlap 2491728 2491726 2491732 2491749 ACCTTGACATATATA GATTATCGATATAT CATAAC ATATATCGATAATC TATATATGGAGGGTT TERM 2837 2491732 - 2491761 + F 76 -9.6 -3.05022 | opp_overlap 2491732 2491730 2491728 2491726 2491749, overlap 2491730 2491728 2491717 2491718 CTTGACATATATAGA TTATCGATATAT CATAAC ATATATCGATAA TCTATATATGGAGGG TERM 2838 2491761 - 2491732 - f 76 -9.6 -3.08197 | opp_overlap 2491730 2491728 2491717 2491718 2491732, overlap 2491730 2491728 2491726 2491749 CTTGACATATATAGA TTATCGATATAT CATAAC ATATATCGATAA TCTATATATGGAGGG Cphy_2018 2491782 - 2492117 + | PadR-like family transcriptional regulator TERM 2839 2492672 - 2492656 - g 74 -9.5 -3.09844 | overlap 2492655 TTGATAGTCCAAAAT TTCATCG ATT CGATGAA GTAGATGCTGAATAT Cphy_2019 2492244 - 2492759 + | GAF domain-containing protein TERM 2840 2493793 - 2493775 - f 70 -8.2 -3.06133 | overlap 2493777 TAACCTGGCATGGAA TACGACAA ACT TCGTCGTA GATGCCAGTTAGAAA Cphy_2020 2493821 - 2495389 + | ABC transporter related Cphy_2021 2495717 - 2496259 + | hypothetical protein TERM 2841 2496663 - 2496676 + G 70 -5.3 -4.39696 | AAACAAGAGCTATGG GAAAC AATT GTTTC TTTCTTAATTTCACA Cphy_2022 2496351 - 2497169 + | 8-oxoguanine DNA glycosylase domain-containing protein TERM 2842 2497236 - 2497182 - T 71 -3 -5.23765 | gap 1, opp_overlap 2497183 2497197 2497227, overlap 2497183 2497186 2497197 TAAACAAGATAAAAA TCTATGTCTTTAGAAGAGCACTCCT TTTTTC AGGTGTGCTCTTCTAAA-ATACTGC GTATTTATTTAATAG TERM 2843 2497234 - 2497186 - T 73 -9.1 -2.92461 | gap 1, opp_overlap 2497183 2497197 2497227, overlap 2497183 2497182 2497197 CAAGATAAAAATCTA TGT-CTTTAGAAGAGCACTCCT TTTTTC AGGTGTGCTCTTCTAAAATACT GCGTATTTATTTAAT TERM 2844 2497197 - 2497222 + T 77 -9 -3.34043 | opp_overlap 2497197 2497186 2497183 2497182, overlap 2497183 TCTATGTCTTTAGAA GAGCACTCCT TTTTTC AGGTGTGCTC TTCTAAAATACTGCG TERM 2845 2497222 - 2497197 - T 77 -9 -3.29511 | opp_overlap 2497183 2497197, overlap 2497186 2497183 2497182 TCTATGTCTTTAGAA GAGCACTCCT TTTTTC AGGTGTGCTC TTCTAAAATACTGCG Cphy_2023 2499246 - 2497270 - | band 7 protein TERM 2846 2497751 - 2497761 + g 73 -5.4 -4.70659 | opp_overlap 2497758, overlap 2497747 GCAATTGCCTGCGCT TCAC GAA GTGA TTTTTCACTCTCCGC Cphy_2024 2499751 - 2500152 + | hypothetical protein Cphy_2025 2500417 - 2502339 + | glycoside hydrolase family protein Cphy_2026 2502320 - 2503300 + | glycoside hydrolase family 42 protein Cphy_2027 2503558 - 2504571 + | aldo/keto reductase TERM 2847 2506131 - 2506142 + G 71 -7.2 -3.86252 | CATCCATCTTGGTAC CGGG TTGA CCCG TTATCTTTCCTCCGA Cphy_2028 2504770 - 2506266 + | glycoside hydrolase family protein TERM 2848 2506528 - 2506497 - f 71 -3.2 -5.26119 | opp_overlap 2506503, overlap 2506500 CTCTTAAAAAGAAAA TATTTACATATATT TGAC AATATATGTTAGTA GCCTTGAATAAAGAG Cphy_2029 2506576 - 2508747 + | hypothetical protein TERM 2849 2508813 - 2508868 + F 93 -6.5 -5.58522 | gap 1, opp_overlap 2508828 2508830 AAAAATATTTCATAA TCTGGTTGGAGAAAAT-ACTATAAAT TAAAT ATTTATAGTTGATATTTCCAGCCAGA TTTTTGTTTTCTATA Cphy_2030 2509222 - 2509998 + | DeoR family transcriptional regulator Cphy_2031 2510093 - 2510728 + | class II aldolase/adducin family protein Cphy_2032 2510848 - 2511708 + | inosine guanosine and xanthosine phosphorylase family protein Cphy_2033 2511875 - 2512939 + | aIF-2BI family translation initiation factor TERM 2850 2512976 - 2512962 - f 72 -7.2 -3.92522 | overlap 2512974 TGGTAATTTTATAAA TGATGT ATT ACATCA TCATCAAAAATGATA TERM 2851 2513078 - 2513060 - f 77 -9 -3.35054 | opp_overlap 2513060, overlap 2513058 2513056 ATTGTAAAGAAGACA TCGATTTA AAA TAAATCGA TTTTAAAAAGATTCA TERM 2852 2513060 - 2513078 + F 85 -9 -4.09739 | opp_overlap 2513060 2513058 2513056 ATTGTAAAGAAGACA TCGATTTA AAA TAAATCGA TTTTAAAAAGATTCA TERM 2853 2513113 - 2513088 - f 80 -7.1 -4.63184 | gap 1, opp_overlap 2513088 2513087 2513095, overlap 2513091 2513095 AATCGATTTTAAAAA GAT-TCAATTCT TAA AGAATTGATATC AATTTTTAAAGAAGA TERM 2854 2513109 - 2513091 - f 73 -9 -2.95166 | opp_overlap 2513088 2513087 2513095, overlap 2513088 2513095 CGATTTTAAAAAGAT TCAATTCT TAA AGAATTGA TATCAATTTTTAAAG Cphy_2034 2513265 - 2514476 + | basic membrane lipoprotein Cphy_2035 2514729 - 2516273 + | ABC transporter related Cphy_2036 2516263 - 2517474 + | inner-membrane translocator TERM 2855 2518335 - 2518347 + G 76 -6.3 -4.6008 | ATGATTTTACCTTAT GCATT AAC AATGC TTTTACTTGTATTTT Cphy_2037 2517465 - 2518424 + | inner-membrane translocator TERM 2856 2519760 - 2519740 - g 79 -6.9 -4.42639 | ATAGCGGAAGTAAAA CCAATGTTA AAT TAACAATGG TCAATGGCAAGATAC Cphy_2038 2518593 - 2519861 + | amidohydrolase TERM 2857 2519996 - 2520049 + T 100 -12.7 -3.91947 | opp_overlap 2520009, overlap 2519999 2520002 ATAAGATTAGTATTT TACTTATATTGAAGGCAGTGACATT ATAA AGAGTCACTGCCTTCAATATTGATA TTACTTTTTAATTTT TERM 2858 2519999 - 2520047 + T 100 -12.8 -3.51015 | gap 1, opp_overlap 2520009, overlap 2519996 2520002 AGATTAGTATTTTAC TT-ATATTGAAGGCAGTGACATT ATAA AGAGTCACTGCCTTCAATATTGA TATTACTTTTTAATT TERM 2859 2520002 - 2520043 + T 100 -18.3 -3.46844 | opp_overlap 2520009, overlap 2519999 2519996 TTAGTATTTTACTTA TATTGAAGGCAGTGACATT ATAA AGAGTCACTGCCTTCAATA TTGATATTACTTTTT TERM 2860 2520036 - 2520009 - T 72 -8.5 -3.1355 | opp_overlap 2520002 2519999 2519996 TTTACTTATATTGAA GGCAGTGAC ATTATAAAGA GTCACTGCC TTCAATATTGATATT Cphy_2039 2520970 - 2520050 - | MerR family transcriptional regulator Cphy_2040 2521269 - 2521069 - | hypothetical protein Cphy_2041 2521522 - 2522046 + | GCN5-related N-acetyltransferase Cphy_2042 2522067 - 2522990 + | helix-turn-helix type 11 domain-containing protein Cphy_2043 2523141 - 2523506 + | endoribonuclease L-PSP Cphy_2044 2523737 - 2524729 + | hypothetical protein TERM 2861 2524936 - 2524966 + F 90 -8.4 -4.87273 | opp_overlap 2524944, overlap 2524944 GAGCGTCGTTTATAA TAAGGAAAGTACGC GAA GCGTGCTTTTTTTG TTTTTGTAAGGTATT TERM 2862 2524944 - 2524958 + F 100 -7.8 -6.23317 | opp_overlap 2524944, overlap 2524936 TTTATAATAAGGAAA GTACGC GAA GCGTGC TTTTTTTGTTTTTGT Cphy_2045 2525098 - 2525718 + | hypothetical protein TERM 2863 2525785 - 2525813 + F 93 -6.9 -5.4505 | gap 1, opp_overlap 2525785 2525783 2525808 AATAGCTTAACAATA GAGAGTCTTACT CATATC AGTAAG-CTCTC TTTTTTCTTAACGGA TERM 2864 2526123 - 2526133 + G 78 -4 -5.31275 | opp_overlap 2526123 ATTTATGAGAAGAAT GATA ACA TATC TTTTTTATCATGCGG Cphy_2046 2526021 - 2527352 + | FAD-dependent pyridine nucleotide-disulphide oxidoreductase TERM 2865 2527622 - 2527649 + G 72 -4 -5.07053 | opp_overlap 2527639, overlap 2527646 AGGACAACTAAATGG CTACTTCGGTGG AGAA CCACCAATGGAG TTTTTTAAACTACTT Cphy_2047 2527488 - 2527835 + | hypothetical protein Cphy_2048 2528018 - 2528731 + | hypothetical protein TERM 2866 2530932 - 2530920 - g 85 -2.7 -5.80951 | overlap 2530921 ACTGAAAACAAAAAA CTTCT TAT AGAAA TTACAAATGAACTTC Cphy_2049 2529276 - 2531009 + | ATP-dependent metalloprotease FtsH TERM 2867 2531160 - 2531140 - f 83 -6.9 -4.84527 | opp_overlap 2531140 TCTATATAGTAAAAA TCCGAGA CTTTTGC TCTCGGA TTTTTTTTGCTTACT TERM 2868 2531140 - 2531160 + F 100 -6.9 -5.96521 | opp_overlap 2531140 TCTATATAGTAAAAA TCCGAGA CTTTTGC TCTCGGA TTTTTTTTGCTTACT Cphy_2050 2531421 - 2532017 + | hypothetical protein TERM 2869 2532051 - 2532089 + F 80 -5.4 -5.14563 | opp_overlap 2532052 2532053, overlap 2532053 TTAAAAGAACATAAG AGGGACTATAGCAAAA AAAGAAA TTTTGCAATAGTCCTA TTTTTTAGTCCACGA TERM 2870 2532087 - 2532053 - f 77 -10.2 -2.71688 | opp_overlap 2532051 2532053, overlap 2532052 AAAAGAACATAAGAG GGACTATAGCAAAA AAAGAAA TTTTGCAATAGTCC TATTTTTTAGTCCAC TERM 2871 2532053 - 2532087 + F 93 -10.2 -4.20707 | opp_overlap 2532053 2532052, overlap 2532051 AAAAGAACATAAGAG GGACTATAGCAAAA AAAGAAA TTTTGCAATAGTCC TATTTTTTAGTCCAC Cphy_2051 2532252 - 2532815 + | hypothetical protein TERM 2872 2532863 - 2532888 + T 100 -7.6 -5.40474 | opp_overlap 2532863 CTAGGAATCTAAAAA CAGCAGACAC AATTTA GTATCTGCTG TTTTTTTGCCCAACT TERM 2873 2532888 - 2532863 - T 100 -9.8 -4.7629 | opp_overlap 2532863 CTAGGAATCTAAAAA CAGCAGACAC AATTTA GTATCTGCTG TTTTTTTGCCCAACT TERM 2874 2532938 - 2532950 + T 71 -5.5 -4.66388 | overlap 2532939 GTTACTTTAATTCTT TCTGC TTC GCAGG TTTCTTTATAGTTTT Cphy_2052 2534393 - 2532924 - | inner-membrane translocator Cphy_2053 2535486 - 2534383 - | inner-membrane translocator Cphy_2054 2537080 - 2535479 - | ABC transporter related TERM 2875 2536718 - 2536735 + g 72 -8.5 -3.52874 | opp_overlap 2536717 2536718, overlap 2536703 GGATTTACTAAAGAT CCTACTT AAGA AAGTAGG TGTTGTTATCTCACG Cphy_2055 2538369 - 2537233 - | lipoprotein TERM 2876 2539338 - 2539292 - g 75 -5.5 -4.82154 | opp_overlap 2539307, overlap 2539294 2539297 AAGGTACATCAAAAA TATAATCTCATCGAAGAAGT-GA TAA TCTACTTCTATGATGAGATTA-A GGACCATGTGGAAGA TERM 2877 2539337 - 2539294 - g 89 -10.6 -4.02302 | gap 1, opp_overlap 2539307, overlap 2539292 2539297 GGTACATCAAAAATA TAATCTCATCGAAGAAGT-GA TAA TCTACTTCTATGATGAGATTA AGGACCATGTGGAAG TERM 2878 2539334 - 2539297 - g 76 -7.9 -4.1193 | gap 1, opp_overlap 2539307, overlap 2539294 2539292 ACATCAAAAATATAA TCTCATCGAAGAAGT-GA TAA TCTACTTCTATGATGAGA TTAAGGACCATGTGG Cphy_2056 2538743 - 2540677 + | hydrogenase, Fe-only TERM 2879 2541649 - 2541633 - g 79 -10.9 -2.80398 | CAAGGAATCGAATTA GCGATTG AAG CAATCGC GTGTAACAAAGTAGA Cphy_2057 2540994 - 2541695 + | pyrrolidone-carboxylate peptidase TERM 2880 2541757 - 2541786 + F 81 -3 -5.77988 | gap 1, opp_overlap 2541757 AAATTTACTATGAAA CTCGTTG-GAT CGTTTTTAT ATCACAACGAG TTTTTTTATATCTAT Cphy_2058 2542002 - 2543411 + | cellulase TERM 2881 2543842 - 2543825 - g 80 -9.9 -3.5362 | overlap 2543823 CAATTTTTAGAAACA CTCCGTT CGTT AACGGAG ATAGCAAAGGTATCG Cphy_2059 2543795 - 2544559 + | hypothetical protein TERM 2882 2544842 - 2544852 + F 74 -5.4 -4.87626 | opp_overlap 2544842 CCTTTAGCATGAAAA GCAA CTT TTGC TTTTTCCTGTTAAAA TERM 2883 2544893 - 2544870 - f 89 -7.6 -5.00616 | gap 1, opp_overlap 2544870 TTTCCTGTTAAAAAA TTCTTGC-ACA GAT TGTTGCAAGAA TTTTTTTGTGTAAAG TERM 2884 2544870 - 2544893 + F 100 -7.6 -5.71712 | gap 1, opp_overlap 2544870 TTTCCTGTTAAAAAA TTCTTGC-ACA GAT TGTTGCAAGAA TTTTTTTGTGTAAAG TERM 2885 2545188 - 2545215 + G 75 -7 -4.33248 | opp_overlap 2545188, overlap 2545190 TAATCATAGCAATAG GTGTTGGTACCG CAGT CGGTATTAACTC TTTATTATCCCGTTA TERM 2886 2545190 - 2545213 + G 74 -8.2 -3.76219 | opp_overlap 2545188, overlap 2545188 ATCATAGCAATAGGT GTTGGTACCG CAGT CGGTATTAAC TCTTTATTATCCCGT Cphy_2060 2544977 - 2546347 + | MATE efflux family protein TERM 2887 2546435 - 2546469 + T 100 -20.3 -3.94877 | opp_overlap 2546437 AGTTATTTATTACGA TAGGGGTATTGGAAC CGAGA GTTCCAATACCCCTA TTATTCTTGACAAGT TERM 2888 2546467 - 2546437 - T 100 -19.2 -2.83164 | opp_overlap 2546435 TTATTTATTACGATA GGGGTATTGGAACC GAG AGTTCCAATACCCC TATTATTCTTGACAA Cphy_2061 2546745 - 2546506 - | hypothetical protein Cphy_2062 2546968 - 2547720 + | ABC transporter related Cphy_2063 2547953 - 2548819 + | hypothetical protein TERM 2889 2548819 - 2548802 - f 72 -5.7 -4.371 | opp_overlap 2548802 CTTATCATACTAAAA TTATCTT ATCG AAGATAA TTAATAATAATTGAG TERM 2890 2548930 - 2548946 + F 72 -5.9 -4.46926 | opp_overlap 2548926 GGATGAAGACATATC TGTAGAT ACA ATCTGCA TTTTATGGTGGCATA TERM 2891 2549089 - 2549047 - f 74 -9.5 -2.62616 | gap 1, opp_overlap 2549038 2549035 2549057, overlap 2549057 2549076 TTACTTGTCATATGA CTT-ATCATAATGGCTTGTC ATAT AACAAGTCATTATGATGAAG TAGTAATAAAGGGGG Cphy_2064 2549113 - 2550396 + | mismatch repair ATPase Cphy_2065 2550526 - 2550768 + | DNA mismatch repair protein MutS Cphy_2066 2550817 - 2551242 + | hypothetical protein TERM 2892 2551689 - 2551713 + F 100 -17.3 -5.99154 | opp_overlap 2551686 CCGCGGATTATATTC GCCCTAAGCTA TGA TAGCTTAGGGC TTTTTTTATTTCCTA Cphy_2067 2551808 - 2553178 + | glycyl-tRNA synthetase TERM 2893 2553327 - 2553291 - T 72 -5.9 -4.51174 | opp_overlap 2553291 2553286, overlap 2553286 GGATTACAATGAAAA GGTATATGCTTGGATAA AAC TTTTCCTTACATATACC TTTTATTAGTCTATA Cphy_2068 2555243 - 2553345 - | peptidase M56 BlaR1 Cphy_2069 2555633 - 2555247 - | CopY family transcriptional regulator TERM 2894 2555690 - 2555635 - R 100 -16.6 -2.90194 | opp_overlap 2555638 2555652, overlap 2555638 2555652 ATTTTTTTAACCATA GTATCATCTCCTACAAATGTATTATA CCAA TATATTACATTTGTAGGAGATGATTG TCAATACTCAAATTG TERM 2895 2555638 - 2555687 + r 100 -22.7 -3.37796 | opp_overlap 2555635 2555638 2555652, overlap 2555652 TTTTTAACCATAGTA TCATCTCCTACAAATGTATTATA CCAA TATATTACATTTGTAGGAGATGA TTGTCAATACTCAAA TERM 2896 2555687 - 2555638 - R 100 -22.7 -2.69964 | opp_overlap 2555638 2555652, overlap 2555635 2555652 TTTTTAACCATAGTA TCATCTCCTACAAATGTATTATA CCAA TATATTACATTTGTAGGAGATGA TTGTCAATACTCAAA Cphy_2070 2556529 - 2555741 - | hypothetical protein TERM 2897 2556746 - 2556728 - g 78 -7.5 -4.24948 | TGATGAGATGGAAAA TTTGAGC GAGAT GCTCAAA GGGGTATTAGAGGGA Cphy_2071 2556720 - 2557058 + | PadR-like family transcriptional regulator Cphy_2072 2557048 - 2557623 + | hypothetical protein TERM 2898 2557763 - 2557795 + F 74 -7.7 -3.86194 | opp_overlap 2557766, overlap 2557766 2557772 2557785 2557786 CACTAATTATACATA CAAGGAAAAGTCCGC AAA GCGTGCTTTTTCATG TTTATGAAAAGGATT Cphy_2073 2558011 - 2558517 + | hypothetical protein Cphy_2074 2558582 - 2559289 + | hydrolase Cphy_2075 2559369 - 2560538 + | amidohydrolase TERM 2899 2560616 - 2560646 + F 100 -10.6 -4.85267 | opp_overlap 2560616 TAGAAATAACAAAAA TCCACTTTACTACT AAA ATTAGTAGAGTGGA TTTTTCGTAGTTTAT TERM 2900 2560646 - 2560616 - f 100 -8.4 -5.42164 | opp_overlap 2560616 TAGAAATAACAAAAA TCCACTTTACTACT AAA ATTAGTAGAGTGGA TTTTTCGTAGTTTAT Cphy_2076 2560810 - 2561481 + | two component transcriptional regulator TERM 2901 2562216 - 2562200 - g 74 -2.9 -5.27399 | overlap 2562202 TAATATACTAAAAAA CTGCATG GAA CATACCG AAGTTGGCGGAAAGT Cphy_2077 2561481 - 2562488 + | integral membrane sensor signal transduction histidine kinase Cphy_2078 2562731 - 2563414 + | ABC transporter related Cphy_2079 2563411 - 2566101 + | hypothetical protein Cphy_2080 2566265 - 2567089 + | cell wall hydrolase/autolysin TERM 2902 2567188 - 2567149 - T 95 -11.8 -3.73659 | gap 1, opp_overlap 2567149, overlap 2567142 2567140 AAATAATAGATAGAA TCTGTTGCAAAATG-AGAT TGA ATATACATTTTGCAACAGA TTTTTTTATTACTGT TERM 2903 2567149 - 2567188 + T 100 -11.8 -5.85737 | gap 1, opp_overlap 2567149 2567142 2567140 AAATAATAGATAGAA TCTGTTGCAAAATG-AGAT TGA ATATACATTTTGCAACAGA TTTTTTTATTACTGT Cphy_2081 2568648 - 2567398 - | small GTP-binding protein TERM 2904 2568802 - 2568788 - R 74 -8.6 -3.36401 | opp_overlap 2568788, overlap 2568787 CTTAGAAACGAAAAT CTCTTG AAC CAAGAG TGATTGACATTAAAT Cphy_2082 2570192 - 2568774 - | thiamine biosynthesis protein ThiH TERM 2905 2569058 - 2569042 - G 72 -3.7 -4.9218 | opp_overlap 2569042 CATGCAGTACAAAAA CTTGG GATAAAT CCAAG TTCCATTAACCATTT Cphy_2083 2571303 - 2570185 - | biotin synthase TERM 2906 2571478 - 2571490 + H 74 -9.1 -3.04398 | overlap 2571477 CAGCTCTACCTCATC GCCAC TAC GTGGC ATTTTAAAACAGGGA TERM 2907 2571518 - 2571500 - H 100 -13.2 -4.13767 | CGTGGCATTTTAAAA CAGGGAAG TCC CTTCCCTG ATGAGGTTAAATTAA TERM 2908 2571560 - 2571538 - H 100 -10.6 -5.37593 | overlap 2571539 GGTTAAATTAAAAAA GGCGCCTTTT GGT AAAAGGCGCA CGAAAAAAACGTAGT TERM 2909 2571559 - 2571539 - H 100 -14.1 -3.81472 | overlap 2571538 GTTAAATTAAAAAAG GCGCCTTTT GGT AAAAGGCGC ACGAAAAAAACGTAG TERM 2910 2571582 - 2571570 - H 79 -3.4 -5.52384 | opp_overlap 2571570 GGCGCACGAAAAAAA CGTA GTATG TACG ATTTGTCAGCCTTTC Cphy_2084 2571880 - 2573673 + | methyl-accepting chemotaxis sensory transducer TERM 2911 2573789 - 2573753 - f 71 -8.1 -3.27903 | opp_overlap 2573748 2573753, overlap 2573748 2573746 2573751 ATATAAAATTTAAGA GCTTTCTCTTATAGTAT CAT AAACTATGAGTGAAAGC TTTTTTTATTGAAAT TERM 2912 2573753 - 2573789 + F 100 -10.3 -5.80364 | opp_overlap 2573748 2573746 2573753 2573751, overlap 2573748 ATATAAAATTTAAGA GCTTTCTCTTATAGTAT CAT AAACTATGAGTGAAAGC TTTTTTTATTGAAAT TERM 2913 2573945 - 2573966 + F 72 -7.4 -3.79787 | opp_overlap 2573948 GGCGTATTCTTGTAA GTATACAG ATAATA CTGTATAC TTTGGATTGATATGG TERM 2914 2574111 - 2574125 + F 72 -5.7 -4.42386 | TCTGTTCACCATCAT TGACC CAGAC GGTCA TTTTATAGGTACAGA Cphy_2085 2574440 - 2576149 + | Pyrrolo-quinoline quinone TERM 2915 2577350 - 2577330 - g 84 -11.3 -3.53298 | opp_overlap 2577333, overlap 2577333 ATGATGGTAAACCAA CAAGAGATA AGA TATCTCTTG GATTCCCAATCAAAG TERM 2916 2577347 - 2577333 - g 71 -7.2 -3.89756 | opp_overlap 2577333, overlap 2577330 ATGGTAAACCAACAA GAGATA AGA TATCTC TTGGATTCCCAATCA Cphy_2086 2576711 - 2578417 + | Pyrrolo-quinoline quinone Cphy_2087 2578457 - 2579296 + | metallophosphoesterase TERM 2917 2579305 - 2579335 + F 100 -14.2 -4.82901 | opp_overlap 2579304 2579303 CAAATGATAAATAGG CAGTCTCAAGAAGT TTC ACTTTTTGAGGCTG TTTTTATAACAAGAA Cphy_2088 2579649 - 2579870 + | hypothetical protein TERM 2918 2579927 - 2579939 + T 70 -6.3 -4.19817 | AGATTAATGATGTCC GTTCA AGT TGAAC TTTTACATAAATAAG TERM 2919 2579994 - 2580043 + T 100 -16.7 -3.06399 | opp_overlap 2580002, overlap 2579999 GAGATAATGTAGTGT TTTAAGGAGCAGTCCAAAAGGGA TTAT TACCTTTTAGACTGCTCCTTTAA TGTGGTTTGATTGCA TERM 2920 2579999 - 2580038 + T 100 -16.6 -3.91087 | opp_overlap 2580002, overlap 2579994 AATGTAGTGTTTTAA GGAGCAGTCCAAAAGGGA TTAT TACCTTTTAGACTGCTCC TTTAATGTGGTTTGA TERM 2921 2580035 - 2580002 - T 100 -13.3 -2.71364 | opp_overlap 2579999 2579994 GTAGTGTTTTAAGGA GCAGTCCAAAAGGGA TTAT TACCTTTTAGACTGC TCCTTTAATGTGGTT Cphy_2089 2581177 - 2580113 - | oxidoreductase domain-containing protein TERM 2922 2581018 - 2581002 - G 70 -6.7 -4.06419 | TTTGTTGATAAACAA TCTTTAA TCG TTAAAGA AGTAGGTATATTATA TERM 2923 2581953 - 2581924 - g 72 -9.5 -2.65993 | opp_overlap 2581928 2581932, overlap 2581926 2581928 2581932 AGGAGAGTGAGATTA CATACGAATCTAA TACC TTAGATTTGTATG TCGATCCTGAACAGA Cphy_2090 2581836 - 2583587 + | hypothetical protein Cphy_2091 2583741 - 2585411 + | hypothetical protein Cphy_2092 2585570 - 2587219 + | hypothetical protein TERM 2924 2587753 - 2587778 + T 80 -7.1 -4.73677 | gap 1, overlap 2587745 2587755 CAATCGCGGGGGTAC TCCTTAGTATTA TCT TAATACTA-GGA TTTCTTTGTTATGAA TERM 2925 2587755 - 2587777 + T 76 -8.6 -3.43122 | overlap 2587753 ATCGCGGGGGTACTC CTTAGTATTA TCT TAATACTAGG ATTTCTTTGTTATGA Cphy_2094 2590483 - 2589692 - | PHP family histidinol phosphatase/hydrolase TERM 2926 2591979 - 2592010 + r 100 -7.4 -5.53288 | opp_overlap 2591972 2591983, overlap 2591972 ACTAATAGTTTACCA TAAATCCCTTACTT TTCG AAGTTTGGGATTTA TTTTTTTGCATTGAA TERM 2927 2592018 - 2592071 + r 100 -16.3 -4.05848 | gap 1, opp_overlap 2592028, overlap 2592019 2592021 2592028 GGGATTTATTTTTTT GCATTGAAAAGGAGCTG-CGCACTAA TAC TTAGTGCGACAGCCCCTTTTTAGTGG TTTGATTATATAATT TERM 2928 2592019 - 2592070 + r 100 -19.8 -3.02424 | gap 1, opp_overlap 2592028, overlap 2592018 2592021 2592028 GGATTTATTTTTTTG CATTGAAAAGGAGCTG-CGCACTAA TAC TTAGTGCGACAGCCCCTTTTTAGTG GTTTGATTATATAAT TERM 2929 2592021 - 2592068 + r 100 -16.6 -3.05935 | gap 1, opp_overlap 2592028, overlap 2592019 2592018 2592028 ATTTATTTTTTTGCA TTGAAAAGGAGCTG-CGCACTAA TAC TTAGTGCGACAGCCCCTTTTTAG TGGTTTGATTATATA TERM 2930 2592028 - 2592061 + r 100 -14.7 -4.84363 | gap 1, opp_overlap 2592028, overlap 2592021 2592019 2592018 TTTTTGCATTGAAAA GGAGCTG-CGCACTAA TAC TTAGTGCGACAGCCCC TTTTTAGTGGTTTGA TERM 2931 2592061 - 2592028 - R 100 -16.9 -4.18018 | gap 1, opp_overlap 2592021 2592019 2592018 2592028 TTTTTGCATTGAAAA GGAGCTG-CGCACTAA TAC TTAGTGCGACAGCCCC TTTTTAGTGGTTTGA Cphy_2096 2592569 - 2592300 - | coat F domain-containing protein TERM 2932 2592373 - 2592383 + g 75 -5.4 -4.77157 | TCTGCAGCTGGTGTT GGAT AAT ATCC TTTTTCATGCATTAC Cphy_2097 2592764 - 2592582 - | hypothetical protein TERM 2933 2592970 - 2592982 + H 72 -4.9 -4.81644 | opp_overlap 2592970 TTTATAATCATGTAA TTAAC TTG GTTAA TTTTAGTTTTATTTC Cphy_2098 2593413 - 2594369 + | Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase Cphy_2099 2594452 - 2594781 + | hypothetical protein TERM 2934 2595680 - 2595666 - g 80 -10 -3.63862 | opp_overlap 2595665 2595664 GATAAGAATAATCAA GGCATC TGT GATGCC GCTTGGTATGCGCTT Cphy_2100 2595165 - 2595725 + | hypothetical protein TERM 2935 2596026 - 2596012 - f 72 -2.8 -5.40072 | CTTTTCCGAAAAAAA TAATCC TTT GGCTTA TAAATCACTTCAGCT TERM 2936 2596659 - 2596683 + G 71 -8.6 -3.26471 | AGTATTTCTGGTCGA CGAGTAGATC TAAAT GATCTACGCG TTGGTATGAGAGTAA Cphy_2101 2596443 - 2597078 + | hypothetical protein TERM 2937 2597248 - 2597270 + F 93 -7 -5.38047 | opp_overlap 2597248 2597243 2597241 GTATGAAGTATAAAA GACTGGATTT TTT AGTTCCAGTC TTTTTTATATGCCTA TERM 2938 2597389 - 2597425 + F 100 -9.8 -4.74453 | gap 1, opp_overlap 2597393 TTACCTAATTTCTAT TTAACCATGCT-TAAAA TCGA TTTTAGAGCGTGGTTAA TTTTTACATATCTTA TERM 2939 2597597 - 2597624 + F 72 -8.6 -3.10533 | opp_overlap 2597598, overlap 2597590 TGTATCCATCAATAA AGTTCGTATAAT CATC ATTATACGAACA TGTCTGATTTTAAGC TERM 2940 2597623 - 2597598 - f 100 -12.1 -4.258 | opp_overlap 2597597 2597590 GTATCCATCAATAAA GTTCGTATAAT CATC ATTATACGAAC ATGTCTGATTTTAAG Cphy_2102 2597738 - 2598319 + | integrase family protein TERM 2941 2598606 - 2598636 + T 100 -13.6 -4.58663 | opp_overlap 2598606, overlap 2598634 AATAGATCACAAAAA TAGGTTGAAAAAAT AAA GTTTTTTCAACCTA TTTTTAGAAAATCGT TERM 2942 2598636 - 2598606 - T 100 -12.9 -4.97666 | opp_overlap 2598606 2598634 AATAGATCACAAAAA TAGGTTGAAAAAA TAAAG TTTTTTCAACCTA TTTTTAGAAAATCGT Cphy_2103 2599902 - 2598670 - | hydroxypyruvate reductase TERM 2943 2599962 - 2599941 - R 100 -12.3 -4.06419 | opp_overlap 2599939 TTTTTTTAGAAAGAA CGCCAAAGC GTAT GCTCTGGCG CGCTTAAAGTATATG Cphy_2104 2601350 - 2599983 - | gluconate transporter Cphy_2105 2602117 - 2602755 + | endo-1,4-beta-xylanase Cphy_2106 2603026 - 2603856 + | hypothetical protein TERM 2944 2603921 - 2603965 + T 78 -8.9 -3.49878 | opp_overlap 2603924 2603929, overlap 2603929 TTAGGTAGTCGTAGA GCATAAAACAGATACC-CGGT TCATC ACAGAGGTATCTGTTTT-TGC TTATAAATTTAATTG TERM 2945 2603958 - 2603929 - T 72 -5.8 -4.50976 | gap 1, opp_overlap 2603929 2603921, overlap 2603924 TCGTAGAGCATAAAA CAGATACC-CGGT TCATC ACAGAGGTATCTG TTTTTGCTTATAAAT TERM 2946 2603929 - 2603958 + T 80 -5.8 -4.93968 | gap 1, opp_overlap 2603924 2603929, overlap 2603921 TCGTAGAGCATAAAA CAGATACC-CGGT TCATC ACAGAGGTATCTG TTTTTGCTTATAAAT TERM 2947 2604243 - 2604229 - T 70 -4.2 -5.08011 | overlap 2604231 AAAACGCCGAAAAAA TAGCCG TGC CAGCCA TGCCTTTCCTACCTC Cphy_2107 2605282 - 2604341 - | AraC family transcriptional regulator Cphy_2108 2605495 - 2607915 + | endo-1,4-beta-xylanase Cphy_2109 2608431 - 2609351 + | aminoglycoside phosphotransferase Cphy_2110 2610592 - 2609432 - | transcriptional regulator, CdaR Cphy_2111 2610968 - 2612110 + | XRE family transcriptional regulator TERM 2948 2612144 - 2612112 - f 70 -7.1 -3.58269 | opp_overlap 2612112 2612115, overlap 2612115 GAAGGGAGGCTTAAA CAAGGTAAAGCAC GTTTCGT ATGCTTTCCCTTG TTATGAATTATGTTA Cphy_2112 2612154 - 2612351 + | hypothetical protein Cphy_2113 2612344 - 2613255 + | ABC transporter related TERM 2949 2613455 - 2613437 - g 81 -11.8 -2.72661 | overlap 2613439 TATTATTTTGAATGA CATCACTG TAA CAGTGATG ACCTCATGGGAACAA Cphy_2114 2613252 - 2614022 + | hypothetical protein TERM 2950 2614052 - 2614092 + F 93 -7 -5.4251 | ATAAGAGGATTTAAA TAAGAAGGATACGGTGTT TAGGC GGCACTGTAATCTTCTTA TTTTTTGTATCTAGG Cphy_2115 2614505 - 2615665 + | major facilitator transporter TERM 2951 2615997 - 2615987 - g 70 -5.4 -4.3851 | GAGACGAAACAGAAA TAGC AAT GCTA GGAGAAGTCGGAGGT Cphy_2116 2615869 - 2616231 + | glyoxalase/bleomycin resistance protein/dioxygenase TERM 2952 2616687 - 2616671 - f 71 -6.7 -4.11183 | opp_overlap 2616648 2616671 2616669 TTCTACCAGAAATAA TATACTT ATC AAGTATA TATTTTCTTAATTCA TERM 2953 2616671 - 2616687 + F 71 -6.7 -4.00694 | opp_overlap 2616671, overlap 2616648 2616669 TTCTACCAGAAATAA TATACTT ATC AAGTATA TATTTTCTTAATTCA Cphy_2117 2616794 - 2617129 + | rubredoxin-type Fe(Cys)4 protein TERM 2954 2617196 - 2617163 - f 100 -9.8 -5.45726 | opp_overlap 2617163 TATATCTTAAAAAAA GAAAGGGCATAAAT AACTCG ATTTATGCCGTTTC TTTTTCTATATCCAA TERM 2955 2617163 - 2617196 + F 100 -9.8 -5.03994 | opp_overlap 2617163 TATATCTTAAAAAAA GAAAGGGCATAAAT AACTCG ATTTATGCCGTTTC TTTTTCTATATCCAA Cphy_2118 2617414 - 2618568 + | hypothetical protein TERM 2956 2618703 - 2618740 + F 87 -8.7 -4.31608 | gap 1, opp_overlap 2618705 2618709, overlap 2618705 2618709 ACATTTAATGAAATG TA-GAAAGCTATGTGTAT TTT AAACGCATAGCTTTCTTA TTATTTATCTTTCTT TERM 2957 2618705 - 2618737 + F 100 -12.9 -4.22749 | opp_overlap 2618705 2618709, overlap 2618703 2618709 ATTTAATGAAATGTA GAAAGCTATGTGTAT TTT AAACGCATAGCTTTC TTATTATTTATCTTT TERM 2958 2618737 - 2618705 - f 80 -10.7 -2.71246 | opp_overlap 2618705 2618703 2618709, overlap 2618709 ATTTAATGAAATGTA GAAAGCTATGTGTAT TTT AAACGCATAGCTTTC TTATTATTTATCTTT TERM 2959 2618709 - 2618733 + F 82 -7.9 -4.64159 | opp_overlap 2618705 2618709, overlap 2618705 2618703 AATGAAATGTAGAAA GCTATGTGTAT TTT AAACGCATAGC TTTCTTATTATTTAT TERM 2960 2620740 - 2620718 - g 80 -10.6 -3.4178 | opp_overlap 2620721, overlap 2620721 2620731 ATCACTGTACTAGAA GAAGGCGAAA CAG CTCCGCCTTC TGGAGAAGAAGTACA TERM 2961 2620973 - 2620953 - g 72 -8.3 -3.53091 | opp_overlap 2620952 2620949 AGTCTGCCGTTGAAA CTGAATGGA ATA TCCATGCAG AATCTTTAAATGAAG Cphy_2119 2619383 - 2621248 + | heavy metal transport/detoxification protein Cphy_2120 2621400 - 2621954 + | hypothetical protein TERM 2962 2622033 - 2622058 + F 74 -7.7 -3.8211 | gap 1, opp_overlap 2622033 2622030 2622019 ATATTGACATAACAA GGAAAAG-TCAC TTC GTGGGCTTTTCC TTATTATGAATAAGA Cphy_2121 2622164 - 2622859 + | two component transcriptional regulator TERM 2963 2622885 - 2622872 - g 83 -2.3 -5.83822 | TAGAGTGAAAAAAAA GAGTC TAAA GACGC AACTTTCACTGGCCA Cphy_2122 2622861 - 2624255 + | integral membrane sensor signal transduction histidine kinase TERM 2964 2624334 - 2624375 + F 100 -17.7 -4.69559 | opp_overlap 2624336 2624342 CTTACTTTAGCTATA TATTAAAAGTCATGCGTTA AAAG TTACGCATGACTTTTAATA TTTCTTTTGCCATTT TERM 2965 2624373 - 2624336 - f 100 -15.9 -2.91582 | opp_overlap 2624334, overlap 2624342 TACTTTAGCTATATA TTAAAAGTCATGCGTTA AAAG TTACGCATGACTTTTAA TATTTCTTTTGCCAT TERM 2966 2624367 - 2624342 - f 95 -10.5 -4.39568 | opp_overlap 2624334, overlap 2624336 AGCTATATATTAAAA GTCATGCGTTA AAAG TTACGCATGAC TTTTAATATTTCTTT TERM 2967 2626484 - 2626470 - g 70 -6.4 -4.17425 | overlap 2626462 2626471 ATAACGAGTGGAAAA CTGTGG ATT CCACAA ATAATGATAATGAAG Cphy_2123 2624531 - 2626852 + | transglutaminase domain-containing protein TERM 2968 2627052 - 2627083 + F 82 -9.6 -3.64703 | opp_overlap 2627054 2627059, overlap 2627054 2627059 AAGAGTATGTAAGCA AAGAAAAGCCTATT GTAA AATGGGCTTTTCTC TTTGGATAACGAAAC TERM 2969 2627054 - 2627081 + F 91 -12.2 -3.40597 | opp_overlap 2627054 2627059, overlap 2627052 2627059 GAGTATGTAAGCAAA GAAAAGCCTATT GTAA AATGGGCTTTTC TCTTTGGATAACGAA TERM 2970 2627081 - 2627054 - f 87 -10 -3.94002 | opp_overlap 2627052 2627054 2627059, overlap 2627059 GAGTATGTAAGCAAA GAAAAGCCTATT GTAA AATGGGCTTTTC TCTTTGGATAACGAA TERM 2971 2627059 - 2627076 + F 80 -6.3 -4.80455 | opp_overlap 2627054 2627059, overlap 2627054 2627052 TGTAAGCAAAGAAAA GCCTATT GTAA AATGGGC TTTTCTCTTTGGATA TERM 2972 2627076 - 2627059 - f 70 -4.1 -4.99947 | opp_overlap 2627059 2627054 2627052, overlap 2627054 TGTAAGCAAAGAAAA GCCTATT GTAA AATGGGC TTTTCTCTTTGGATA Cphy_2124 2627181 - 2627966 + | aspartate dehydrogenase Cphy_2125 2627980 - 2628885 + | D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding TERM 2973 2628896 - 2628917 + F 87 -11.6 -3.03038 | opp_overlap 2628899, overlap 2628899 2628907 TGTAACTGATTTGAA GAAGCCCG CTACCA CGGGCTTC TGTGGTTTAAATATA TERM 2974 2628899 - 2628914 + F 73 -7.5 -3.65112 | opp_overlap 2628899, overlap 2628896 2628907 AACTGATTTGAAGAA GCCCG CTACCA CGGGC TTCTGTGGTTTAAAT TERM 2975 2628914 - 2628899 - f 75 -8.2 -3.6579 | opp_overlap 2628899 2628896 2628907 AACTGATTTGAAGAA GCCCGC TACC ACGGGC TTCTGTGGTTTAAAT Cphy_2126 2628955 - 2629557 + | pentapeptide repeat-containing protein Cphy_2127 2629709 - 2631667 + | hypothetical protein TERM 2976 2631970 - 2631933 - T 100 -14.3 -4.68724 | opp_overlap 2631937, overlap 2631937 CGACTTAATAGAAAA GCAACAGAGTGCAGTTC AAAT GAACTGCACTCTGTTTT ACATAGCAAGGAAAA TERM 2977 2631937 - 2631966 + T 100 -19.5 -4.18018 | opp_overlap 2631933 2631937 TTAATAGAAAAGCAA CAGAGTGCAGTTC AAAT GAACTGCACTCTG TTTTACATAGCAAGG TERM 2978 2631966 - 2631937 - T 100 -19.5 -3.82442 | opp_overlap 2631937, overlap 2631933 TTAATAGAAAAGCAA CAGAGTGCAGTTC AAAT GAACTGCACTCTG TTTTACATAGCAAGG Cphy_2128 2634589 - 2632016 - | mannan endo-1,4-beta-mannosidase Cphy_2129 2634921 - 2635286 + | ArsR family transcriptional regulator Cphy_2130 2635399 - 2635950 + | hypothetical protein TERM 2979 2636094 - 2636111 + F 71 -8.5 -2.84462 | opp_overlap 2636093 2636094, overlap 2636093 2636089 TTATTCATGACAAAT GAATTGG ACTG CCAATTC CTCTTGTTTATTTCC TERM 2980 2636111 - 2636094 - f 71 -8.5 -2.98447 | opp_overlap 2636094 2636093 2636089, overlap 2636093 TTATTCATGACAAAT GAATTGG ACTG CCAATTC CTCTTGTTTATTTCC Cphy_2131 2636185 - 2636763 + | GCN5-related N-acetyltransferase Cphy_2132 2639602 - 2637083 - | ATPase, P-type (transporting), HAD superfamily, subfamily IC TERM 2981 2638048 - 2638059 + g 81 -4.4 -5.42259 | TAATTTTATCACTGT TTGG CATA CCAA TTTTTTTAGCGATAG TERM 2982 2638767 - 2638753 - G 100 -7.2 -5.42975 | CCATAGAAAGAAAAA CTGTTA GGA TAACAG GAAATTCCTCAGGTA TERM 2983 2639735 - 2639698 - H 100 -12.2 -5.82388 | AAAGGGTAAAAAAAA TCACACCTATGGAACA CATTAC TGTCCCACAGATGTGA ATTGAAATTCAATCT TERM 2984 2640064 - 2640042 - H 73 -4.3 -5.12707 | GCAAATGGCAAAAAA TCATGATAT AATAA ATATCATAA AATAGATGTTGGAGG Cphy_2133 2640085 - 2640363 + | hypothetical protein Cphy_2134 2640571 - 2642034 + | hypothetical protein TERM 2985 2642234 - 2642290 + T 86 -9.7 -4.08394 | opp_overlap 2642234 2642250 TCTCGTCAGAAATAA TAGTAGATTAAAAAAATAACCGTCCCT CGT AAGACCGGTTATTTTTTTAATCAACCA TTTTGCGAGGGGTAT TERM 2986 2642290 - 2642234 - T 100 -16.3 -4.06419 | opp_overlap 2642234, overlap 2642250 TCTCGTCAGAAATAA TAGTAGATTAAAAAAATAACCGTCCCT CGT AAGACCGGTTATTTTTTTAATCAACCA TTTTGCGAGGGGTAT TERM 2987 2642274 - 2642250 - T 90 -5.7 -5.59357 | opp_overlap 2642234, overlap 2642234 AGTAGATTAAAAAAA TAACCGTCCCT CGT AAGACCGGTTA TTTTTTTAATCAACC TERM 2988 2642344 - 2642356 + T 70 -6.3 -4.24183 | overlap 2642341 AAGCATATTCTCCAT GAACA GTC TGTTC TTGTTGTTTGTTATA Cphy_2135 2644175 - 2642424 - | ABC transporter related Cphy_2136 2645166 - 2644165 - | ABC transporter related Cphy_2137 2645928 - 2645176 - | ABC-type multidrug transport system ATPase and permease components-like protein TERM 2989 2645891 - 2645902 + g 81 -4.4 -5.35354 | GATAGGATTCTATCA GGTT TTAC AACC TTTTTTGCTTGTCTG Cphy_2138 2646398 - 2645925 - | MarR family transcriptional regulator TERM 2990 2646443 - 2646480 + H 78 -5.7 -4.78149 | opp_overlap 2646444, overlap 2646444 TATAATATATAAAAA AGATGTAGTATCAACTA AATA TATATGATACTACATCC TTTTTCAGTTATCAA TERM 2991 2646479 - 2646444 - H 100 -9.2 -5.48787 | opp_overlap 2646443 2646444 ATAATATATAAAAAA GATGTAGTATCAACTA AATA TATATGATACTACATC CTTTTTCAGTTATCA TERM 2992 2646444 - 2646479 + H 78 -9.2 -3.46167 | opp_overlap 2646444, overlap 2646443 ATAATATATAAAAAA GATGTAGTATCAACTA AATA TATATGATACTACATC CTTTTTCAGTTATCA Cphy_2139 2646855 - 2647898 + | extracellular solute-binding protein Cphy_2140 2647959 - 2649653 + | histidine kinase internal region Cphy_2141 2649690 - 2650472 + | two component AraC family transcriptional regulator TERM 2993 2650562 - 2650619 + F 70 -8.1 -3.04944 | opp_overlap 2650567 2650572, overlap 2650572 TAATAGTATCTATGA CATAACAAAAGGTACCTTGA-AGTGGC ATATAA GCCAAAATCAAGGTACCTTTT-TTGTG TAATATTTTATTATT TERM 2994 2650572 - 2650610 + F 93 -6.8 -5.40625 | gap 1, opp_overlap 2650567 2650572, overlap 2650562 TATGACATAACAAAA GGTACCTTGA-AGTGGC ATATAA GCCAAAATCAAGGTACC TTTTTTGTGTAATAT TERM 2995 2650610 - 2650572 - f 83 -6.8 -4.85918 | gap 1, opp_overlap 2650572 2650562, overlap 2650567 TATGACATAACAAAA GGTACCTTGA-AGTGGC ATATAA GCCAAAATCAAGGTACC TTTTTTGTGTAATAT TERM 2996 2651519 - 2651509 - g 70 -5.4 -4.41616 | opp_overlap 2651509 ACCTCTCTAAAGAAA GCAT TTG ATGC TTTAGACAGCACAAA Cphy_2142 2650834 - 2652171 + | hypothetical protein TERM 2997 2652217 - 2652191 - f 82 -9.4 -3.71998 | opp_overlap 2652194, overlap 2652194 TATTTATTAACAGAA TTAGGGGCGTTT ATG ATACGCCCCTTA ATTAATAAAGGAAGA TERM 2998 2652194 - 2652214 + F 87 -11.1 -3.39895 | opp_overlap 2652191 2652194 TTATTAACAGAATTA GGGGCGTTT ATG ATACGCCCC TTAATTAATAAAGGA TERM 2999 2652214 - 2652194 - f 83 -11.1 -2.95751 | opp_overlap 2652194, overlap 2652191 TTATTAACAGAATTA GGGGCGTTT ATG ATACGCCCC TTAATTAATAAAGGA Cphy_2143 2652240 - 2654066 + | binding-protein-dependent transport systems inner membrane component Cphy_2144 2654068 - 2655714 + | ABC transporter related TERM 3000 2655844 - 2655803 - f 100 -17.5 -3.14132 | opp_overlap 2655803 CGTTTGGTCCATTAA GGTTCAGCAGTATGACACT TTCT AGTGCTATACCGCTGAACC TTTTTTATTGTGATT TERM 3001 2655803 - 2655844 + F 100 -15.3 -5.59534 | opp_overlap 2655803 CGTTTGGTCCATTAA GGTTCAGCAGTATGACACT TTCT AGTGCTATACCGCTGAACC TTTTTTATTGTGATT TERM 3002 2656331 - 2656370 + F 100 -16.8 -3.56142 | opp_overlap 2656327 2656335 2656341, overlap 2656335 TGATGAAATAATTGT TAAAGGCAAACCATATAT GATT ATTTATGGTTTGCCTTTA TTGCTTCTTGGTACA TERM 3003 2656366 - 2656335 - f 100 -13.2 -3.6512 | opp_overlap 2656331 2656335, overlap 2656327 2656341 GAAATAATTGTTAAA GGCAAACCATATAT GATT ATTTATGGTTTGCC TTTATTGCTTCTTGG TERM 3004 2656335 - 2656366 + F 100 -13.2 -4.39877 | opp_overlap 2656335 2656327 2656341, overlap 2656331 GAAATAATTGTTAAA GGCAAACCATATAT GATT ATTTATGGTTTGCC TTTATTGCTTCTTGG Cphy_2145 2656506 - 2656790 + | hypothetical protein Cphy_2146 2657252 - 2656887 - | hypothetical protein Cphy_2147 2657278 - 2657796 + | hypothetical protein Cphy_2148 2657890 - 2659413 + | DNA-repair protein Cphy_2149 2659410 - 2659838 + | hypothetical protein TERM 3005 2659891 - 2659916 + F 80 -6.2 -4.91194 | TTTAATCTTTATTAA CCCTTTAAAC TTAAAT GTTTGAGGGG TTTTGTCTTTATTAT TERM 3006 2660876 - 2660862 - g 74 -2.9 -5.40464 | TATGATAAAGAAAAA GTAAT TCGTG ATTAC AGGAAGAATTCTGTG Cphy_2150 2660334 - 2660927 + | phosphodiesterase TERM 3007 2661027 - 2661071 + F 100 -10.1 -5.47218 | opp_overlap 2661041 2661044 ATAATAGAGAATATG GGAGTGTTGCAAAATGACTAA ATT TTAGTTATGGAGCAACGCTCC TTTTTTTGCATAGGG TERM 3008 2661198 - 2661228 + F 79 -3.5 -5.52807 | gap 1 TATGTTGAGTACTTA TAGACATT-AGACT TTAT GGTTTTAATGTCTA TTTTTATTTATTCTT Cphy_2151 2661398 - 2661727 + | ArsR family transcriptional regulator Cphy_2152 2661794 - 2663542 + | arsenite-activated ATPase ArsA Cphy_2153 2663601 - 2664650 + | arsenical-resistance protein Cphy_2154 2664668 - 2665051 + | arsenical resistance operon trans-acting repressor ArsD Cphy_2155 2665090 - 2665500 + | protein tyrosine phosphatase TERM 3009 2665662 - 2665610 - T 73 -8.4 -3.48807 | opp_overlap 2665616, overlap 2665616 TTACCAAACTTATAA TAGTAATGGCCGATGCCCACGTTC CTTGT GAATGAGAGCATCGGCCATTTTTC ACGGCATCTTATAAT TERM 3010 2665616 - 2665656 + T 100 -16.2 -4.57837 | opp_overlap 2665610 2665616 AACTTATAATAGTAA TGGCCGATGCCCACGTTC CTTGT GAATGAGAGCATCGGCCA TTTTTCACGGCATCT TERM 3011 2665656 - 2665616 - T 100 -16.2 -3.42861 | opp_overlap 2665616, overlap 2665610 AACTTATAATAGTAA TGGCCGATGCCCACGTTC CTTGT GAATGAGAGCATCGGCCA TTTTTCACGGCATCT Cphy_2156 2666563 - 2665661 - | LysR family transcriptional regulator Cphy_2157 2666709 - 2668148 + | pyridoxal-dependent decarboxylase TERM 3012 2668382 - 2668434 + F 100 -17.7 -5.4833 | gap 1, opp_overlap 2668394 2668421 TATCTATTATTTGAA CATTTGTAAAAATGTGGTATA-AT CTTTTT ATATATACCACATTTTTACAAATG TTTTTTATTAAATAG Cphy_2158 2668476 - 2668760 + | hypothetical protein TERM 3013 2668782 - 2668768 - f 89 -8.6 -4.7219 | TATACTAATACAAAA TCAAGG GAG CCTTGA AGATGAAAAATTTAT Cphy_2159 2668785 - 2669726 + | hypothetical protein Cphy_2160 2669799 - 2670587 + | hypothetical protein Cphy_2161 2670607 - 2671065 + | cupin 2 domain-containing protein Cphy_2162 2671244 - 2671888 + | GCN5-related N-acetyltransferase Cphy_2163 2671997 - 2672296 + | hypothetical protein Cphy_2164 2672421 - 2673038 + | hypothetical protein TERM 3014 2673453 - 2673435 - g 79 -3.1 -5.58209 | CGAAATTTAAAAAAA TCTTCGA CTGGT TCGATGA AGTTGGCGACGAAGA Cphy_2165 2673110 - 2673586 + | hypothetical protein Cphy_2166 2674071 - 2674601 + | nitroreductase Cphy_2167 2675143 - 2675394 + | hypothetical protein Cphy_2168 2675361 - 2675846 + | hypothetical protein TERM 3015 2675822 - 2675863 + F 74 -8.9 -3.17212 | opp_overlap 2675854 GGAGCATCCTGAGAT GTATTGCTTGTTTCCAATT CTAT AGATGGAAACAAGTGGTAC TTGATGGGCTGATGA TERM 3016 2676007 - 2675986 - f 71 -3.2 -5.2291 | ATATCAGAATAAAAA TTATTAAT ATATGA ATTAATAA AAAGGGGGCGTTGCA TERM 3017 2676508 - 2676531 + F 70 -3.9 -5.09221 | opp_overlap 2676513 ACCCTAAAAGTCTCG GAAATCTTG ATTTTA CAAGCTTTC TTTATTTTTGTTCTA TERM 3018 2676552 - 2676596 + F 83 -10.4 -3.10761 | opp_overlap 2676560 TTTTGTTCTATTTTA TTTACTAAGATTTGCTTC ATTTTTTGC GAAGAAAATCTTAGTAAA TGTCGTTTATTGAAC TERM 3019 2676840 - 2676821 - f 74 -5.8 -4.61868 | TACGTAGATATAAAA CTCATCAT AACT ATAATGAG AACCAAATGATGACT TERM 3020 2677261 - 2677275 + F 76 -3.6 -5.47218 | opp_overlap 2677271, overlap 2677263 ACGCTGAGATGACTC TTGAAA ATA TTTCGA TTTTTTTAAATGGAA Cphy_2169 2677724 - 2678545 + | hypothetical protein Cphy_2170 2678983 - 2679942 + | hypothetical protein Cphy_2171 2679952 - 2680446 + | heat shock protein DnaJ domain-containing protein TERM 3021 2680756 - 2680780 + T 100 -10.1 -4.86033 | opp_overlap 2680760, overlap 2680760 ACTAAACTATCTCCT GAAAGCCTTGA TTT TGAAGGCTTTC TTTTTATGCGCATTT TERM 3022 2680760 - 2680776 + T 75 -5.1 -4.96501 | opp_overlap 2680760, overlap 2680756 AACTATCTCCTGAAA GCCTTGA TTT TGAAGGC TTTCTTTTTATGCGC TERM 3023 2680794 - 2680849 + T 76 -5.5 -5.05782 | opp_overlap 2680811, overlap 2680796 2680799 TCTTTTTATGCGCAT TTTTAGTCCCCAACTTATCCTACAA TTATAT TTGAAGGATAAGTTGGGGAATCCTG TTTTTTGAAGTAAAT TERM 3024 2680796 - 2680847 + T 95 -10.3 -4.15748 | opp_overlap 2680811, overlap 2680794 2680799 TTTTTATGCGCATTT TTAGTCCCCAACTTATCCTACAA TTATAT TTGAAGGATAAGTTGGGGAATCC TGTTTTTTGAAGTAA TERM 3025 2680799 - 2680844 + T 100 -16.4 -3.08977 | opp_overlap 2680811, overlap 2680796 2680794 TTATGCGCATTTTTA GTCCCCAACTTATCCTACAA TTATAT TTGAAGGATAAGTTGGGGAA TCCTGTTTTTTGAAG TERM 3026 2681698 - 2681647 - T 73 -8 -3.49182 | opp_overlap 2681654, overlap 2681644 2681683 AGACAGCATAATGAA TCCAGACCCTTGCTGGGTTCCAGA GCAA TCTGAAATCTACCAGGGTTCTGGA AAGAAACCCGATAAC TERM 3027 2682178 - 2682157 - T 76 -8.7 -3.56562 | opp_overlap 2682157 2682174, overlap 2682146 2682145 AAATGTATTAGATAA TGCGATCAC ATTT GTGGTCGCA TTTCTTATGCGATTC TERM 3028 2682157 - 2682178 + T 100 -10.9 -4.33248 | opp_overlap 2682146 2682145 2682157, overlap 2682174 AAATGTATTAGATAA TGCGATCAC ATTT GTGGTCGCA TTTCTTATGCGATTC Cphy_2172 2683085 - 2682183 - | integrase catalytic region TERM 3029 2682213 - 2682238 + g 70 -2.7 -5.20781 | gap 1, overlap 2682216 CTTTTTCTTTGCTTC TAATTC-TGCTT TAT AAGCAAGAATTC TTTTGTTTTCTGGTA Cphy_2173 2683846 - 2683160 - | transposase IS3/IS911 family protein TERM 3030 2683900 - 2683854 - R 100 -11.7 -4.87592 | opp_overlap 2683854 2683859 2683871 TTAGACATAATAAAA TCCCTCCAAAGTAGTTTTGGT TATTT ACCATGTCTACTTTAGAGGGA TCATATCAGTAGCAG TERM 3031 2683854 - 2683900 + r 87 -11.7 -2.64616 | opp_overlap 2683854, overlap 2683859 2683871 TTAGACATAATAAAA TCCCTCCAAAGTAGTTTTGGT TATTT ACCATGTCTACTTTAGAGGGA TCATATCAGTAGCAG TERM 3032 2683953 - 2683978 + r 80 -5.7 -5.01497 | gap 1, opp_overlap 2683957 2683960 ATAAAAATGATATTT TAAAGTAT-ATG CTA CATAATACTTTA TTTTTGTATGATACT Cphy_2174 2684371 - 2683976 - | hypothetical protein TERM 3033 2684262 - 2684276 + g 72 -3.6 -4.94902 | overlap 2684258 ATTTCCTGACACAAC GATAAT ATC ATTGTC TTTTTCTGATGATTA Cphy_2175 2685171 - 2684368 - | hypothetical protein Cphy_2176 2686381 - 2686956 + | hypothetical protein TERM 3034 2687649 - 2687667 + G 73 -3.2 -5.1675 | opp_overlap 2687649 2687665 AGATAACGATATAAA TAATGTTT TGA AATCATTA TTTTTTAATAAGTCG Cphy_2177 2686972 - 2688351 + | hypothetical protein TERM 3035 2688348 - 2688406 + T 100 -10.1 -4.99043 | gap 1, opp_overlap 2688359 2688361 2688364, overlap 2688354 2688357 ATTATTTTTTGATAA TTAG-GTTAATATATAAGCCACAGTATG AATT TATACTGTGGCTTATATATTATTATTAG TTTTATTTATCAGCA TERM 3036 2688354 - 2688399 + T 100 -21.7 -4.03546 | opp_overlap 2688359 2688361 2688364, overlap 2688348 2688357 TTTTGATAATTAGGT TAATATATAAGCCACAGTATG AATT TATACTGTGGCTTATATATTA TTATTAGTTTTATTT TERM 3037 2688357 - 2688396 + T 100 -19 -4.0911 | opp_overlap 2688359 2688361 2688364, overlap 2688354 2688348 TGATAATTAGGTTAA TATATAAGCCACAGTATG AATT TATACTGTGGCTTATATA TTATTATTAGTTTTA TERM 3038 2688394 - 2688359 - T 100 -16.5 -3.08283 | opp_overlap 2688357 2688354 2688348, overlap 2688361 2688364 ATAATTAGGTTAATA TATAAGCCACAGTAT GAATTT ATACTGTGGCTTATA TATTATTATTAGTTT TERM 3039 2688392 - 2688361 - T 100 -14.7 -3.09557 | opp_overlap 2688357 2688354 2688348, overlap 2688359 2688364 AATTAGGTTAATATA TAAGCCACAGTAT GAATTT ATACTGTGGCTTA TATATTATTATTAGT TERM 3040 2688389 - 2688364 - T 95 -12 -3.68738 | opp_overlap 2688357 2688354 2688348, overlap 2688361 2688359 TAGGTTAATATATAA GCCACAGTAT GAATTT ATACTGTGGC TTATATATTATTATT TERM 3041 2688588 - 2688635 + T 76 -7.2 -4.1899 | AAACTCAAATAGTAG CATCTCCATTATTGCGCTAAAT CCAG GTTTAACGTAATAATAGGGGTG TTTTAAATGAGATAC TERM 3042 2689316 - 2689282 - T 100 -8.8 -6.00814 | opp_overlap 2689282 AATAATCAAAAAAAA GAAAAGAAATTACTTA TCA TTAGTAATCCCTTTTC TTATTCTTCCAAATC Cphy_2178 2689666 - 2689334 - | hypothetical protein Cphy_2179 2690895 - 2689774 - | cysteine desulfurase TERM 3043 2690367 - 2690340 - G 73 -7.2 -4.14725 | gap 1, opp_overlap 2690341, overlap 2690342 TATCTAAATCATAAA CA-TCAATTGGTA CTT TACCAACTGACTG TGATGCATCGGTATG TERM 3044 2690364 - 2690342 - G 84 -10 -3.66216 | opp_overlap 2690341, overlap 2690340 TCTAAATCATAAACA TCAATTGGTA CTT TACCAACTGA CTGTGATGCATCGGT Cphy_2180 2691004 - 2691660 + | ArsR family transcriptional regulator TERM 3045 2691760 - 2691714 - T 100 -11.8 -4.71061 | opp_overlap 2691714 2691720, overlap 2691716 2691717 2691720 ATTTATAGGCAAAAA TACCAATAGCCAAGAGATTGAT ATG ATCACTCTCCTGGCTATTAATC TTCTATCACATTATG TERM 3046 2691758 - 2691716 - T 100 -14.4 -3.96999 | opp_overlap 2691714 2691720, overlap 2691714 2691717 2691720 TTATAGGCAAAAATA CCAATAGCCAAGAGATTGAT ATG ATCACTCTCCTGGCTATTAA TCTTCTATCACATTA TERM 3047 2691757 - 2691717 - T 100 -15.7 -2.97476 | opp_overlap 2691714 2691720, overlap 2691716 2691714 2691720 TATAGGCAAAAATAC CAATAGCCAAGAGATTGAT ATG ATCACTCTCCTGGCTATTA ATCTTCTATCACATT TERM 3048 2691754 - 2691720 - T 100 -15.2 -3.61527 | opp_overlap 2691714 2691720, overlap 2691717 2691716 2691714 AGGCAAAAATACCAA TAGCCAAGAGATTGAT ATG ATCACTCTCCTGGCTA TTAATCTTCTATCAC TERM 3049 2691720 - 2691754 + T 100 -13 -3.44443 | opp_overlap 2691720 2691717 2691716 2691714, overlap 2691714 AGGCAAAAATACCAA TAGCCAAGAGATTGAT ATG ATCACTCTCCTGGCTA TTAATCTTCTATCAC Cphy_2181 2692935 - 2691895 - | threonine aldolase Cphy_2182 2694063 - 2693182 - | patatin TERM 3050 2694166 - 2694141 - R 93 -6.1 -5.52909 | opp_overlap 2694141 TAAGATTGAAAAAAA TGGCACCATCC CTTC AGTTGATGCCA TTCTACACTCTATAT Cphy_2183 2694989 - 2694243 - | CutC family protein Cphy_2184 2696594 - 2695170 - | leucyl aminopeptidase Cphy_2185 2697487 - 2696627 - | hypothetical protein Cphy_2186 2700275 - 2697540 - | transglutaminase domain-containing protein TERM 3051 2697733 - 2697750 + g 71 -4.2 -4.84363 | overlap 2697723 TAAACCTGAATATTC GGTATT TTTTCT AATACC TTTTTCATAGTTTCA Cphy_2187 2702664 - 2700406 - | AraC family transcriptional regulator TERM 3052 2701763 - 2701749 - G 73 -6.4 -4.27886 | opp_overlap 2701749 CGGTAAAGATAGAAA TCACAC AAA GTGCGA TGATTAAGTATTTCA TERM 3053 2702252 - 2702268 + g 76 -6.5 -4.49316 | TCATATGCCCGATTA TCCGCTG GGA CAACGGA TTTATTCTTCATGAT Cphy_2188 2702785 - 2703105 + | hypothetical protein Cphy_2189 2704676 - 2703144 - | glutaredoxin 2 TERM 3054 2704264 - 2704281 + g 75 -5.5 -4.83615 | overlap 2704267 TTGTTGTTATTGTTA CTATGGC TATT GCCATCG TTTTTATCAAAACTA TERM 3055 2704652 - 2704683 + g 80 -10.3 -3.46068 | opp_overlap 2704651 2704652, overlap 2704651 GGCATGATTCACAAG GGTTGTCATGAAA AAAATA TATCATGACAACC TCTTTCGCTTCCGCC TERM 3056 2704683 - 2704652 - G 76 -10.3 -2.62463 | opp_overlap 2704652 2704651, overlap 2704651 GGCATGATTCACAAG GGTTGTCATGAAA AAAATA TATCATGACAACC TCTTTCGCTTCCGCC Cphy_2190 2706071 - 2704764 - | Alpha-L-fucosidase TERM 3057 2706088 - 2706109 + r 100 -6.5 -5.75342 | TTTTCCCTCTTTTCT GTACACGCA TGAA TGCGGGTGC TTTTTTTTGCCCAAA TERM 3058 2706157 - 2706125 - R 71 -7.7 -3.53012 | opp_overlap 2706112 2706128, overlap 2706128 TTTTTTTTGCCCAAA CCAGTTTGTGGTTGC AAC GCAGACACAAACTTG CTGAGTAAAAGATTT TERM 3059 2706128 - 2706154 + r 82 -10.2 -3.18264 | opp_overlap 2706128 2706125, overlap 2706112 TTTTTGCCCAAACCA GTTTGTGGTTGC AAC GCAGACACAAAC TTGCTGAGTAAAAGA Cphy_2191 2707117 - 2706212 - | binding-protein-dependent transport systems inner membrane component Cphy_2192 2708053 - 2707130 - | binding-protein-dependent transport systems inner membrane component TERM 3060 2708070 - 2708115 + r 73 -7.6 -3.67342 | opp_overlap 2708058 2708074 2708077, overlap 2708073 2708077 AGACAACCTCCCTTA GAAATGAGGGGGCTGATAAA CCATTA TGTAGCAGCCCCCTTGATTC TTATATCATTCTTTT TERM 3061 2708108 - 2708077 - R 76 -9.4 -3.00946 | opp_overlap 2708073 2708070 2708077, overlap 2708058 2708074 CTCCCTTAGAAATGA GGGGGCTGATAAAC CATT ATGTAGCAGCCCCC TTGATTCTTATATCA TERM 3062 2708077 - 2708108 + r 77 -8.7 -3.60395 | opp_overlap 2708058 2708077 2708074, overlap 2708073 2708070 CTCCCTTAGAAATGA GGGGGCTGATAAA CCATTA TGTAGCAGCCCCC TTGATTCTTATATCA Cphy_2193 2709802 - 2708129 - | extracellular solute-binding protein TERM 3063 2710007 - 2709986 - R 100 -6.6 -5.67967 | opp_overlap 2709986 2709987, overlap 2709987 ATTAGTATAAAAAAA CCCAGTAG TGGTTG CTACTGGA TTTTAATGGTATTTA TERM 3064 2709987 - 2710006 + r 74 -8.6 -3.21156 | opp_overlap 2709986 2709987, overlap 2709986 TTAGTATAAAAAAAC CCAGTAGT GGTT GCTACTGG ATTTTAATGGTATTT TERM 3065 2710006 - 2709987 - R 77 -7.9 -3.99153 | opp_overlap 2709987 2709986, overlap 2709986 TTAGTATAAAAAAAC CCAGTAG TGGTTG CTACTGG ATTTTAATGGTATTT Cphy_2194 2710530 - 2710144 - | hypothetical protein Cphy_2195 2710892 - 2711944 + | integrase family protein Cphy_2196 2712330 - 2712103 - | hypothetical protein Cphy_2197 2712796 - 2712452 - | hypothetical protein Cphy_2198 2713097 - 2712783 - | hypothetical protein Cphy_2199 2713576 - 2713097 - | hypothetical protein TERM 3066 2713552 - 2713579 + g 100 -9.2 -4.89054 | overlap 2713553 TATAGAAAAGATTTC TGAATGCGGGGT AGAT ATCCTGCATTCG TTCTTTTTTTATGCC TERM 3067 2713553 - 2713578 + g 82 -10.5 -3.51806 | overlap 2713552 ATAGAAAAGATTTCT GAATGCGGGGT AGAT ATCCTGCATTC GTTCTTTTTTTATGC Cphy_2200 2716144 - 2714264 - | ABC transporter related Cphy_2201 2717987 - 2716131 - | ABC transporter related TERM 3068 2716887 - 2716876 - G 71 -4.4 -4.72272 | TTTGGGTAGCAAAAA GAGA CATC TCTC AACTCAATCTGATAA TERM 3069 2717092 - 2717082 - G 70 -6.8 -4.09015 | overlap 2717075 AAAATATAGCACAAA CTGC GCG GCAG ACATCTTCCCCCCAA TERM 3070 2717231 - 2717215 - G 74 -5.1 -4.73613 | opp_overlap 2717215 CCACGAGCAATAAAA CTTCGAT ACA AACGAAG TATGCTATTATATAC Cphy_2202 2718355 - 2718032 - | phosphopantetheine-binding TERM 3071 2718118 - 2718132 + g 74 -2.8 -5.28281 | AATTATGCAATTCAT CTGACA GCT TGTTGG TTTTATTTATTTTCT Cphy_2203 2718614 - 2718360 - | IS3 family transposase TERM 3072 2718397 - 2718408 + g 76 -5.8 -4.62054 | TCTTTTAATTCCCTA CGCA ATCT TGCG TTTTCCTTTGCTTCA Cphy_2204 2719208 - 2719666 + | hypothetical protein TERM 3073 2720102 - 2720073 - T 90 -8.1 -4.8622 | opp_overlap 2720077, overlap 2720077 TTGTTCAAGCAAAAA TAAAGTCCATT CCTATAAT AATGGACTTTA TCTAAAAATGCTTTA TERM 3074 2720098 - 2720077 - T 73 -4.5 -4.96773 | opp_overlap 2720077, overlap 2720073 TCAAGCAAAAATAAA GTCCATT CCTATAAT AATGGAC TTTATCTAAAAATGC Cphy_2205 2720356 - 2720126 - | hypothetical protein TERM 3075 2720728 - 2720711 - R 80 -7.1 -4.56597 | opp_overlap 2720711 CCTGGGCTTGAAAAA TGTACAT AAAA ATGTACA TAATTAATAGAAAAC Cphy_2206 2721305 - 2721030 - | hypothetical protein TERM 3076 2721198 - 2721183 - G 76 -7.6 -4.15222 | ATTCGTTGGAATAAA GGAATC CGAT GATTCC ACATTAATCGTTATC Cphy_2207 2722410 - 2721373 - | FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor)-like protein TERM 3077 2721904 - 2721928 + g 74 -4.3 -5.03715 | opp_overlap 2721903 AAAGCCCATAATATT TGTCACAGT TGCGTGT ACCGTGACA TTTTTTCCAGCTAAT Cphy_2208 2723719 - 2722427 - | hypothetical protein TERM 3078 2723654 - 2723640 - G 71 -7.1 -3.86897 | TCCATCGCGTATAAA TGGGC TGGTT GCCCA ACGAGCATCATAAAT TERM 3079 2724316 - 2724282 - R 100 -13.8 -3.47322 | opp_overlap 2724282, overlap 2724289 CTTTACCATAATTAA GTGCAAAGTTCTTATT AGC ATCAAGAACTTTGCAC TTTTATTATTAAATA TERM 3080 2724282 - 2724316 + r 100 -12.5 -4.91084 | gap 1, opp_overlap 2724282 2724289 CTTTACCATAATTAA GTGCAAAGTTCTT-AT TAGC ATCAAGAACTTTGCAC TTTTATTATTAAATA Cphy_2209 2725350 - 2724406 - | hypothetical protein TERM 3081 2724927 - 2724913 - G 81 -7.1 -4.69559 | overlap 2724916 AAATTTCAAAACAAA GCAGG CAATC CCTGC CGACAAGCCTATACT Cphy_2210 2726581 - 2725508 - | hypothetical protein Cphy_2211 2728450 - 2726612 - | hypothetical protein TERM 3082 2727450 - 2727466 + g 75 -9.5 -3.28447 | overlap 2727449 TCAAAGGTTACATCT GCTAATG TAT CATTAGC TATTCTCATCAATAA Cphy_2212 2730374 - 2728428 - | glycosyl transferase family protein TERM 3083 2730399 - 2730457 + r 73 -7.7 -3.72363 | gap 1, opp_overlap 2730402, overlap 2730402 CCCCACATATCTGAT AAATTGTTACTATTGGGCCTATTA-GCT TCAC AGCATCATAGGCCAAATAGTAACGATAA TTTCACCTTTAGGTC TERM 3084 2730402 - 2730454 + r 100 -13.8 -2.9587 | gap 1, opp_overlap 2730402, overlap 2730399 CACATATCTGATAAA TTGTTACTATTGGGCCTATTA-GCT TCAC AGCATCATAGGCCAAATAGTAACGA TAATTTCACCTTTAG TERM 3085 2730454 - 2730402 - R 95 -11.6 -3.91858 | gap 1, opp_overlap 2730402 2730399 CACATATCTGATAAA TTGTTACTATTGGGCCTATTA-GCT TCAC AGCATCATAGGCCAAATAGTAACGA TAATTTCACCTTTAG Cphy_2213 2733857 - 2730477 - | polysaccharide deacetylase TERM 3086 2733535 - 2733551 + g 82 -6.6 -4.95484 | opp_overlap 2733535 GCTGCCAGAATACCA GGAACA AAAAA TGTTCC TTTTCTTTCATACTC Cphy_2214 2735244 - 2733925 - | nucleotide sugar dehydrogenase Cphy_2215 2736753 - 2736223 - | chloramphenicol phosphotransferase family protein Cphy_2216 2737645 - 2736794 - | hypothetical protein TERM 3087 2737580 - 2737599 + g 71 -5.1 -4.57073 | TGTTAATTTATCTCC CAACATT CTTGCA AATGTTG TTTTTCCCGAACCTG Cphy_2217 2738352 - 2737954 - | hypothetical protein TERM 3088 2738205 - 2738218 + g 78 -5.3 -4.96848 | GATATACGAGAAAGT CGATA GCTT TATCG TTTTTATATAGCACC Cphy_2218 2738857 - 2738606 - | acetyltransferase Cphy_2219 2739800 - 2739342 - | hypothetical protein TERM 3089 2739407 - 2739420 + g 72 -8.1 -3.47573 | TCAAGTCACATTCCA GCGCA TATT TGCGC TTATAATCTAGCTCG TERM 3090 2740590 - 2740606 + H 72 -8.7 -3.10062 | overlap 2740587 2740586 2740601 TAACAAAGAGTTCAT GTGCAGG ATG TCTGCAC TGCTGTTTTTGTTGT TERM 3091 2740705 - 2740736 + H 100 -15.4 -5.60993 | opp_overlap 2740701 2740710 ACTTTGATATATTTA TGAGATGCAAGAAG TAAC TTTCTTGCATCTCA TTTTTTTATACGGAG TERM 3092 2742151 - 2742175 + G 70 -2.9 -5.09762 | opp_overlap 2742165 2742169 ATGCAGATAGAAACG TTGTTACTTGA ATA TCAACCAACAA TTTTGTTTGTTGAGC TERM 3093 2742189 - 2742200 + G 76 -5.8 -4.57837 | overlap 2742198 AATTTTGTTTGTTGA GCAC GATA GTGC TTTTTGCAGCAATAT Cphy_2220 2740762 - 2742240 + | ABC transporter related TERM 3094 2742338 - 2742297 - f 82 -8.8 -3.96327 | opp_overlap 2742307 ATTTCTCATGACAAA CTCCATGCAAAGCCAG ATGTTGCTGG CGGTCTTTGCATGGAG TAATAAGAAATAACC Cphy_2221 2742410 - 2743444 + | radical SAM protein Cphy_2222 2744206 - 2743730 - | hypothetical protein Cphy_2223 2744823 - 2744233 - | GCN5-related N-acetyltransferase TERM 3095 2744300 - 2744314 + g 81 -8.6 -4.08692 | TTATATTCTTCTACT TCTTCC CTT GGAAGA TTTTCAAAGACATTC TERM 3096 2745742 - 2745772 + r 91 -8.3 -5.06585 | opp_overlap 2745742 AAACACATATAAAAA CGCCGATTCCAAA TTTCT TGTGGAATCGACG TTTTTATATGATTTC TERM 3097 2745772 - 2745742 - R 100 -10.5 -5.1104 | opp_overlap 2745742 AAACACATATAAAAA CGCCGATTCCAAA TTTCT TGTGGAATCGACG TTTTTATATGATTTC Cphy_2225 2746479 - 2745787 - | alpha/beta fold family hydrolase TERM 3098 2745879 - 2745844 - G 77 -8.4 -3.91897 | opp_overlap 2745843 GTTTTCATCCATAAA TGCATGCTCACTGTTT TCAG AAACAGTGAGATTACA GTTGAATTTACTGGA TERM 3099 2746546 - 2746508 - R 70 -8.3 -3.0353 | opp_overlap 2746508, overlap 2746507 2746504 CTTGGGATAAACAAT GGAAGCACCGTTTTT CTATCACGT AAATACAGTGCTTCC TTTAGTCCTATTTGT Cphy_2226 2746889 - 2746563 - | thiol-disulfide isomerase and thioredoxin TERM 3100 2746753 - 2746765 + g 73 -2 -5.42265 | CTTTTAATCTTTGGA TACT CCTCT AGTA TTTTTTCTACTTTCG TERM 3101 2747097 - 2747076 - R 100 -13.1 -5.31275 | opp_overlap 2747076 CCTTACCATAAAAAA TCCGTCTAC TTGT GTAGACGGA TTTTAGGCATTACTA TERM 3102 2747076 - 2747097 + r 100 -13.1 -4.15106 | opp_overlap 2747076 CCTTACCATAAAAAA TCCGTCTAC TTGT GTAGACGGA TTTTAGGCATTACTA Cphy_2227 2748205 - 2747288 - | hypothetical protein Cphy_2228 2748356 - 2749678 + | transcriptional regulator Cphy_2229 2751046 - 2750045 - | glyceraldehyde-3-phosphate dehydrogenase, type I TERM 3103 2750722 - 2750736 + g 100 -11.4 -4.72272 | opp_overlap 2750721 2750719 CGCCCGCATTAATAT GTGCGG CGG CCGCAC TTTTTGATGCAAAAA Cphy_2230 2751170 - 2752021 + | AraC family transcriptional regulator Cphy_2231 2752427 - 2752206 - | hypothetical protein Cphy_2232 2752855 - 2753613 + | hypothetical protein TERM 3104 2753652 - 2753682 + T 77 -7.6 -4.14511 | opp_overlap 2753650 2753652 TAGTATGTGTAAATA GGAAGTTGCCAACT TTA ATTTGACAGCTTCC TTTTCAGATACACTT Cphy_2233 2754471 - 2753821 - | hypothetical protein Cphy_2234 2755159 - 2754464 - | ABC transporter related Cphy_2235 2755505 - 2755152 - | GntR family transcriptional regulator TERM 3105 2755265 - 2755286 + g 70 -6.6 -4.08767 | gap 1 TCACCATTTGTTGTT CCAGG-TGC AAATG GCATCCTGG TTTTACAAAACTACC TERM 3106 2755788 - 2755839 + r 100 -23.4 -3.5002 | opp_overlap 2755794, overlap 2755793 AAGCAAAATGGATAC GAAAAAGGGTGTTACAGAACTAAC ATAG GTTAGTTCCGTAACACCCCTTTTC TTCGTTATAATTGAG TERM 3107 2755793 - 2755834 + r 100 -17.5 -4.81852 | opp_overlap 2755794, overlap 2755788 AAATGGATACGAAAA AGGGTGTTACAGAACTAAC ATAG GTTAGTTCCGTAACACCCC TTTTCTTCGTTATAA TERM 3108 2755833 - 2755794 - R 100 -23.2 -4.82154 | opp_overlap 2755793 2755788 AATGGATACGAAAAA GGGTGTTACAGAACTAAC ATAG GTTAGTTCCGTAACACCC CTTTTCTTCGTTATA Cphy_2236 2756701 - 2755898 - | abortive infection protein Cphy_2237 2758021 - 2756774 - | galactokinase Cphy_2238 2758286 - 2758041 - | hypothetical protein Cphy_2239 2758623 - 2759510 + | AraC family transcriptional regulator TERM 3109 2759526 - 2759555 + T 100 -13.1 -3.82604 | opp_overlap 2759516 2759529, overlap 2759516 2759529 GTAATCATTTCAGTA GAAGTGTGAAATG CTTT TATTTCACACTTC TTATTCATTCCATAC TERM 3110 2759529 - 2759552 + T 85 -9 -4.0342 | opp_overlap 2759516 2759529, overlap 2759516 2759526 ATCATTTCAGTAGAA GTGTGAAATG CTTT TATTTCACAC TTCTTATTCATTCCA TERM 3111 2759552 - 2759529 - T 73 -8.3 -3.4178 | opp_overlap 2759516 2759529 2759526, overlap 2759516 ATCATTTCAGTAGAA GTGTGAAAT GCTTTT ATTTCACAC TTCTTATTCATTCCA Cphy_2240 2760221 - 2759556 - | hypothetical protein TERM 3112 2759638 - 2759660 + g 70 -2.7 -5.09225 | gap 1, overlap 2759639 2759639 ATAGCTCCACTATAT TCC-CAACCT GTAA AGGTTGAGGC TTTTTTGACTGGCGT TERM 3113 2760289 - 2760247 - R 74 -9.2 -3.04398 | opp_overlap 2760256 2760279, overlap 2760246 2760256 TCTCCCTTTTAAAAT GGCGCAACAGGATGCTCATC TAA GATAAGTATCCTGTTGCAAG GTGAAAGAGGTTGTT TERM 3114 2760331 - 2760366 + r 79 -7.2 -4.46155 | gap 1, opp_overlap 2760339, overlap 2760334 2760339 GATAATATCGTAGTT TCA-TAAAATCTTTCTA TAG TAGAATGATTTTATTGA TTTTATAACTATATC TERM 3115 2760334 - 2760362 + r 80 -9.1 -3.76186 | opp_overlap 2760339, overlap 2760331 2760339 AATATCGTAGTTTCA TAAAATCTTTCTA TAG TAGAATGATTTTA TTGATTTTATAACTA TERM 3116 2760339 - 2760357 + r 70 -4.6 -4.90918 | opp_overlap 2760339, overlap 2760334 2760331 CGTAGTTTCATAAAA TCTTTCTA TAG TAGAATGA TTTTATTGATTTTAT Cphy_2241 2761603 - 2760521 - | monosaccharide-transporting ATPase Cphy_2242 2763118 - 2761619 - | ABC transporter related TERM 3117 2763148 - 2763173 + r 77 -8.9 -3.34236 | opp_overlap 2763148, overlap 2763151 2763170 CTTACTCTGCAAAAA GCAGCTGCCGC CTAA GCAGCAGCTAC TTCTCACGTAGATTT TERM 3118 2763173 - 2763148 - R 100 -13.3 -4.58395 | opp_overlap 2763148 2763151 2763170 CTTACTCTGCAAAAA GCAGCTGCCGC CTAA GCAGCAGCTAC TTCTCACGTAGATTT TERM 3119 2763151 - 2763170 + r 73 -9.2 -2.83822 | opp_overlap 2763148, overlap 2763148 ACTCTGCAAAAAGCA GCTGCCGC CTAA GCAGCAGC TACTTCTCACGTAGA Cphy_2243 2764294 - 2763191 - | periplasmic binding protein/LacI transcriptional regulator TERM 3120 2764894 - 2764859 - H 87 -5.6 -5.56673 | gap 1 ATGCACAATAAAAAA TGATTATCCCGCAACCT CCA AAGTAAC-GGATAATCA TTTTTTATCACATTT TERM 3121 2764918 - 2764936 + H 81 -9 -3.94184 | opp_overlap 2764920 CACATTTTGGGCAAG CATAAGTT TTT AACTTATG TTTCCTGTTACCTAT TERM 3122 2765117 - 2765141 + H 100 -12.9 -4.03179 | overlap 2765119 AACAGTGAGTTGTTT AACCTGCCACA TAG TGTGGCAGGTC TTTCATTCTACTGTA TERM 3123 2765119 - 2765139 + H 100 -15.5 -3.59981 | overlap 2765117 CAGTGAGTTGTTTAA CCTGCCACA TAG TGTGGCAGG TCTTTCATTCTACTG Cphy_2246 2766142 - 2767005 + | hypothetical protein TERM 3124 2767297 - 2767283 - g 73 -7.1 -4.14541 | overlap 2767292 TAGTAAGGATACAAA GGAGG TAAAT CCTCC TACTAAGACAAAGGA TERM 3125 2767324 - 2767310 - g 86 -10 -4.23674 | overlap 2767292 2767319 TCCTACTAAGACAAA GGAGGA AAA TCCTCC TTACAAGGCAAAGGA TERM 3126 2767342 - 2767319 - g 76 -6.8 -4.40993 | gap 1, overlap 2767310 GACAAAGGAGGAAAA TCCTCC-TTAC AAG GCAAAGGAGGA TTGAAATCATGGAGC Cphy_2247 2767050 - 2767346 + | hypothetical protein Cphy_2248 2767598 - 2767906 + | hypothetical protein TERM 3127 2768188 - 2768140 - T 95 -12.1 -3.68988 | gap 2, overlap 2768158 TTTTACTCAATATAA CAGCTAACCCCTTTAAAAGCATC TGACC AATGCTC--AAAGGGGTTAGCTG CAAGAAGCCATTAAT Cphy_2249 2769996 - 2768584 - | hypothetical protein Cphy_2250 2770653 - 2770414 - | hypothetical protein TERM 3128 2771515 - 2771552 + r 90 -12.2 -3.31322 | gap 1, opp_overlap 2771519 2771522, overlap 2771519 2771522 AGCCTCCCCTTTTTA GCAA-CAACCCACTACA AATGG TGCAGTGGGTTGTTTGC TTATGCACAATTCAG TERM 3129 2771547 - 2771519 - R 100 -14 -3.14132 | opp_overlap 2771519 2771515 2771522, overlap 2771522 TCCCCTTTTTAGCAA CAACCCACTACA AATGG TGCAGTGGGTTG TTTGCTTATGCACAA TERM 3130 2771519 - 2771547 + r 100 -11.8 -3.9941 | opp_overlap 2771519 2771522, overlap 2771515 2771522 TCCCCTTTTTAGCAA CAACCCACTACA AATGG TGCAGTGGGTTG TTTGCTTATGCACAA TERM 3131 2771522 - 2771544 + r 77 -7.7 -4.12296 | opp_overlap 2771519 2771522, overlap 2771519 2771515 CCTTTTTAGCAACAA CCCACTACA AATGG TGCAGTGGG TTGTTTGCTTATGCA TERM 3132 2771544 - 2771522 - R 86 -9.9 -3.71848 | opp_overlap 2771522 2771519 2771515, overlap 2771519 CCTTTTTAGCAACAA CCCACTACA AATGG TGCAGTGGG TTGTTTGCTTATGCA Cphy_2251 2772641 - 2771679 - | periplasmic binding protein/LacI transcriptional regulator Cphy_2252 2774337 - 2772628 - | histidine kinase internal region Cphy_2253 2775952 - 2774354 - | two component AraC family transcriptional regulator TERM 3133 2775595 - 2775607 + g 73 -3.5 -5.10767 | GATCCAGCTTATCCT TTATT TCT AATAA TTTTTGTGTTAAATC TERM 3134 2776435 - 2776458 + r 83 -9.6 -3.85698 | opp_overlap 2776435 ATTATCTTTAAAAAA CGACAACCAG TATT CTGATTGTCG TTTATGAAAAGCAAA TERM 3135 2776458 - 2776435 - R 100 -11.8 -5.03715 | opp_overlap 2776435 ATTATCTTTAAAAAA CGACAACCAG TATT CTGATTGTCG TTTATGAAAAGCAAA Cphy_2254 2777086 - 2776586 - | GCN5-related N-acetyltransferase Cphy_2255 2778413 - 2777382 - | FMN-dependent alpha-hydroxy acid dehydrogenase TERM 3136 2778697 - 2778713 + r 86 -9.5 -4.10429 | overlap 2778688 TTACTCGTAGCTCAT TAGCAAC TAC GTTGCTA TTTTAGCAGGTGCTT TERM 3137 2778743 - 2778788 + r 100 -13.4 -2.56095 | opp_overlap 2778744 2778747, overlap 2778747 2778751 TGTACTTTCACTGAA ACAAGGAAGTCCCCCGCT ACTGCTTCTA AGCGAGGGACTTCCTTGA TGGGTTAAATCTCGA TERM 3138 2778787 - 2778744 - R 100 -19.1 -3.65351 | opp_overlap 2778743 2778747 2778751, overlap 2778747 GTACTTTCACTGAAA CAAGGAAGTCCCCCGCT ACTGCTTCTA AGCGAGGGACTTCCTTG ATGGGTTAAATCTCG TERM 3139 2778747 - 2778784 + r 100 -12.8 -3.22388 | opp_overlap 2778744 2778747, overlap 2778743 2778751 CTTTCACTGAAACAA GGAAGTCCCCCGCT ACTGCTTCTA AGCGAGGGACTTCC TTGATGGGTTAAATC TERM 3140 2778784 - 2778747 - R 100 -15 -3.96216 | opp_overlap 2778747 2778743 2778751, overlap 2778744 CTTTCACTGAAACAA GGAAGTCCCCCGCT ACTGCTTCTA AGCGAGGGACTTCC TTGATGGGTTAAATC Cphy_2256 2779296 - 2778835 - | phosphodiesterase TERM 3141 2779603 - 2779579 - R 100 -12.3 -5.55698 | opp_overlap 2779579 TAGAACTCAAAAAAA GTAGTAGCCAA TAG TTAGCTACTAC TTTTTGAAAAGAACG TERM 3142 2779579 - 2779603 + r 93 -10.1 -4.56597 | opp_overlap 2779579 TAGAACTCAAAAAAA GTAGTAGCCAA TAG TTAGCTACTAC TTTTTGAAAAGAACG Cphy_2257 2781097 - 2779625 - | hypothetical protein TERM 3143 2781144 - 2781179 + r 74 -6.4 -4.43351 | opp_overlap 2781143, overlap 2781141 GCTAGTTTAATTTAT GACAAGAAAAAG TTCGTAAAGCTT CTTTTTCTTGTC TTATTTTTCAGATAT Cphy_2258 2783832 - 2781202 - | cell wall hydrolase/autolysin TERM 3144 2783105 - 2783126 + g 72 -8.1 -3.59583 | opp_overlap 2783094 2783110, overlap 2783096 2783094 2783093 2783110 TTAATATTACCTTTT GTAAAGGAA ATAG TTCCTTTGC TTTCGGAATACTTGT Cphy_2259 2784064 - 2784792 + | PP-loop domain-containing protein TERM 3145 2784810 - 2784867 + T 100 -13.2 -4.39226 | opp_overlap 2784811, overlap 2784811 AGGACTTTCCCAAAA ACAGGGGTAATTGATAACTTATAG-TCT TTAC AGATCTATAAGT-ACCAATTACCCCTGC TTATTTTCTCGTTCT TERM 3146 2784811 - 2784866 + T 100 -16.7 -3.21909 | opp_overlap 2784811, overlap 2784810 GGACTTTCCCAAAAA CAGGGGTAATTGATAACTTATAG-TCT TTAC AGATCTATAAGT-ACCAATTACCCCTG CTTATTTTCTCGTTC TERM 3147 2784866 - 2784811 - T 100 -18.9 -4.57569 | opp_overlap 2784811 2784810 GGACTTTCCCAAAAA CAGGGGTAATTGATAACTTATAG-TCT TTAC AGATCTATAAGT-ACCAATTACCCCTG CTTATTTTCTCGTTC Cphy_2260 2785681 - 2784920 - | hypothetical protein Cphy_2261 2787524 - 2785803 - | phosphoglucomutase/phosphomannomutase alpha/beta/subunit TERM 3148 2787657 - 2787685 + r 80 -10.3 -2.76189 | opp_overlap 2787661 2787681 2787682, overlap 2787648 2787647 2787654 TGTTTTTTGCGCATA GCAAGTTTGTGGC GCA GACACAAACCTGC TGGTTAAATGCATTG TERM 3149 2787681 - 2787661 - R 71 -8.3 -3.25823 | opp_overlap 2787657 2787654 TTTTGCGCATAGCAA GTTTGTGGC GCA GACACAAAC CTGCTGGTTAAATGC TERM 3150 2787715 - 2787681 - R 93 -10.8 -4.12532 | opp_overlap 2787657 2787654, overlap 2787682 TGGCGCAGACACAAA CCTGCTGGTTAAATGC ATT GCATTCAACCTGCAAA GTGTGAAATGGATTT TERM 3151 2787714 - 2787682 - R 89 -12.1 -3.07198 | opp_overlap 2787657 2787654, overlap 2787681 GGCGCAGACACAAAC CTGCTGGTTAAATGC ATT GCATTCAACCTGCAA AGTGTGAAATGGATT Cphy_2262 2789236 - 2788055 - | N-acylglucosamine 2-epimerase TERM 3152 2789197 - 2789212 + g 78 -7.6 -4.29621 | opp_overlap 2789196 2789199 CTACTTCTGACAGAT GAGCTT TCGC AAGCTC TTTCATTTGTTTGTA TERM 3153 2789432 - 2789402 - R 87 -11.3 -3.09492 | opp_overlap 2789402 CTTTTAATCGTAACA TTAGGGATGCAAA AATAG CTTGCACCCCTAA TTATGGCTGGAAAGT TERM 3154 2789402 - 2789432 + r 71 -8.4 -3.35798 | opp_overlap 2789402 CTTTTAATCGTAACA TTAGGGATGCAA AAATAGC TTGCACCCCTAA TTATGGCTGGAAAGT Cphy_2263 2790608 - 2789493 - | hypothetical protein Cphy_2264 2791639 - 2790617 - | glycosidase PH1107-related Cphy_2265 2793189 - 2791741 - | extracellular solute-binding protein Cphy_2266 2795134 - 2793236 - | hypothetical protein Cphy_2267 2796264 - 2795272 - | binding-protein-dependent transport systems inner membrane component Cphy_2268 2797195 - 2796278 - | binding-protein-dependent transport systems inner membrane component Cphy_2269 2799770 - 2797161 - | hypothetical protein Cphy_2272 2802787 - 2801915 - | binding-protein-dependent transport systems inner membrane component Cphy_2273 2803739 - 2802804 - | binding-protein-dependent transport systems inner membrane component Cphy_2274 2806796 - 2803758 - | extracellular solute-binding protein Cphy_2275 2807427 - 2806789 - | hypothetical protein Cphy_2276 2809082 - 2807484 - | Mannan endo-1,4-beta-mannosidase Cphy_2277 2809660 - 2810001 + | hypothetical protein TERM 3155 2810423 - 2810384 - T 86 -5.9 -5.47159 | opp_overlap 2810384 2810400 2810421 TTTTAAGACAAAAAA CTAACCAGAAACAGTCT TATGAC ATAATGTTTCTGATTAG TTGTAAACAATTATC Cphy_2278 2811483 - 2810437 - | LacI family transcription regulator TERM 3156 2811928 - 2811887 - H 84 -11.2 -3.0634 | opp_overlap 2811897 2811899 2811901, overlap 2811890 2811895 AAGTTTACTGTAACA TCATTTAATATACAGCTG TCTTGT CAGCTGTATATTAAAAAA CATAATGAGGTATTT TERM 3157 2811925 - 2811890 - H 100 -15.1 -2.75074 | opp_overlap 2811897 2811899 2811901, overlap 2811887 2811895 TTTACTGTAACATCA TTTAATATACAGCTG TCTTGT CAGCTGTATATTAAA AAACATAATGAGGTA TERM 3158 2811920 - 2811895 - H 83 -10.6 -3.13432 | opp_overlap 2811897 2811899 2811901, overlap 2811890 2811887 TGTAACATCATTTAA TATACAGCTG TCTTGT CAGCTGTATA TTAAAAAACATAATG TERM 3159 2811897 - 2811918 + H 72 -8.8 -3.02144 | opp_overlap 2811895 2811890 2811887, overlap 2811899 2811901 TAACATCATTTAATA TACAGCTG TCTTGT CAGCTGTA TATTAAAAAACATAA Cphy_2279 2811948 - 2812523 + | hypothetical protein Cphy_2280 2813866 - 2812772 - | S-adenosylmethionine--tRNA-ribosyltransferase-isomerase TERM 3160 2814062 - 2814072 + r 77 -4 -5.47431 | overlap 2814055 2814053 CTATATCTTGATGTT TCAT ATC ATGA TTTTTTATATCTTGA Cphy_2281 2815828 - 2814137 - | SpoIID/LytB domain-containing protein Cphy_2282 2816022 - 2816549 + | hypothetical protein TERM 3161 2816678 - 2816706 + T 100 -6.9 -5.86465 | gap 1, opp_overlap 2816678 AACAATATAAAAAAA CTGCTTCATATC CAAAAA GA-ATGAAGCAG TTTTTTTATATTGTT TERM 3162 2816706 - 2816678 - T 100 -7.6 -5.86465 | gap 1, opp_overlap 2816678 AACAATATAAAAAAA CTGCTTCATATCC AAAA AGA-ATGAAGCAG TTTTTTTATATTGTT Cphy_2283 2817787 - 2816942 - | hypothetical protein TERM 3163 2817672 - 2817686 + g 70 -6.4 -4.07877 | opp_overlap 2817672 2817673, overlap 2817673 TCTAGATCAGAAAAA TCATCC GCA GGATGG TTGTTTCTAGCCTGA TERM 3164 2817686 - 2817672 - G 74 -4.2 -4.95155 | opp_overlap 2817672 2817673, overlap 2817673 TCTAGATCAGAAAAA TCATCC GCA GGATGG TTGTTTCTAGCCTGA Cphy_2284 2818384 - 2817806 - | signal peptidase I TERM 3165 2818443 - 2818429 - R 74 -4.2 -5.22006 | opp_overlap 2818429 2818420 2818419 TCATGACAAGAAAAA GTTAGC GTA GCTTAC TTTTCTTGATTATAT TERM 3166 2818506 - 2818539 + r 76 -9.7 -3.08813 | gap 1, overlap 2818502 2818508 ACTCATTCATTTTTT TATGGGG-TGCCGCAA AAA TTGTGACAACCCCATA TATGTTAGAATAAAA Cphy_2285 2819411 - 2818734 - | orotate phosphoribosyltransferase Cphy_2286 2820373 - 2819471 - | dihydroorotate dehydrogenase family protein Cphy_2287 2821262 - 2820492 - | oxidoreductase FAD/NAD(P)-binding subunit TERM 3167 2820854 - 2820866 + g 70 -2.7 -5.08824 | TTTCTGAACGATATC CAAGT ACT ATTTG TTTTTTACCTGGGAG Cphy_2288 2821909 - 2821316 - | hypothetical protein TERM 3168 2821814 - 2821797 - G 76 -7.7 -4.1523 | TGCATTACAGATAAA CTACAGG CTGC CCTGCAG TGCATAATGACCGGT Cphy_2289 2823359 - 2821986 - | peptidase M23B TERM 3169 2822433 - 2822410 - G 76 -6.8 -4.51174 | TTATTATAAGGAAAA TTCTTACGCA TATG TGCGTAATAA TAATAGCGTTTTCCA Cphy_2290 2823526 - 2824149 + | FliA/WhiG family RNA polymerase sigma factor TERM 3170 2824238 - 2824225 - T 71 -8.1 -3.19205 | overlap 2824223 2824218 CAAAGTAATGCAATA CGCCA TGAA TGGCG CACTAAAAAAGAGAA TERM 3171 2824280 - 2824249 - T 88 -6.8 -5.14563 | opp_overlap 2824249 TGGCGCACTAAAAAA GAGAAAATGAAA ATTAATGA TTTCACTTTCTC TTTTTTAAGTTAGCA TERM 3172 2824249 - 2824280 + T 77 -4.6 -5.15969 | opp_overlap 2824249 TGGCGCACTAAAAAA GAGAAAATGAAA ATTAATGA TTTCACTTTCTC TTTTTTAAGTTAGCA Cphy_2291 2825640 - 2824360 - | peptidase U32 TERM 3173 2825604 - 2825622 + g 95 -8.2 -4.96848 | CTTCTAAGTTACTTG CTGGAATT AAC AATTCCGG TTTTTCTCTACGAAA Cphy_2292 2826499 - 2825780 - | O-methyltransferase family protein TERM 3174 2826399 - 2826412 + g 73 -5.3 -4.57057 | CGAATGATAGGTACT GCATT TTCT AATGC TTCTTTTTCTAATAT TERM 3175 2826654 - 2826599 - R 82 -7.7 -4.48713 | TCTATCAATAAGAAA GGACTACCCGTAGCCGCTG-GAAAGTG GAAA CATTTCAACAACGGCCACG-GTAGCCC TAATATTCAAGAAGA Cphy_2293 2827168 - 2826713 - | hypothetical protein Cphy_2294 2829050 - 2827194 - | beta-lactamase domain-containing protein Cphy_2295 2829589 - 2829110 - | ferric uptake regulator family protein TERM 3176 2830023 - 2830011 - R 87 -7.7 -4.7458 | opp_overlap 2830009 2830011 AGCATAACAAACAAA GGTAG CTG CTACC TGATTTTAAACTGTA Cphy_2296 2830334 - 2830062 - | hypothetical protein Cphy_2297 2830884 - 2830432 - | Holliday junction resolvase YqgF TERM 3177 2830927 - 2830937 + r 71 -6.8 -3.97812 | opp_overlap 2830922 2830915 TAATAGAAAAGCAGC GTGG TTG CCAC TTTCCTATTAATTAT Cphy_2298 2831266 - 2831000 - | hypothetical protein Cphy_2299 2832794 - 2831394 - | MiaB-like tRNA modifying enzyme Cphy_2300 2833053 - 2833286 + | phosphotransferase system, phosphocarrier protein HPr TERM 3178 2833302 - 2833326 + T 100 -14.5 -5.87996 | opp_overlap 2833302 TTAAACATAATCAAA CAGTTGTTATC TAT GATAACAACTG TTTTTTTATTACTTA TERM 3179 2833326 - 2833302 - T 100 -14.5 -4.11501 | opp_overlap 2833302 TTAAACATAATCAAA CAGTTGTTATC TAT GATAACAACTG TTTTTTTATTACTTA Cphy_2301 2834510 - 2833335 - | thiamine biosynthesis/tRNA modification protein ThiI Cphy_2302 2835930 - 2834743 - | aminotransferase class V Cphy_2303 2836741 - 2836001 - | hypothetical protein TERM 3180 2836554 - 2836570 + g 78 -6.7 -4.61231 | opp_overlap 2836554 2836556 TTACGCTCAGATATA GATAATA TAA TATTATC TTTTTCAAACTCTGC TERM 3181 2836677 - 2836695 + g 80 -8.8 -3.88232 | overlap 2836690 TTTATATGATTTACA TCCGCACC CTC GATGCGGA TTGTTGTATCCGAAA TERM 3182 2836937 - 2836897 - R 100 -13.5 -4.89393 | overlap 2836899 TAAATTTTATAAAAA TAGAATCTCAAAGCCCAAT TCT ACAAGGCTTTGAGATTCCA AGAAGTTACTATTAA TERM 3183 2836935 - 2836899 - R 100 -13.9 -4.05669 | overlap 2836897 AATTTTATAAAAATA GAATCTCAAAGCCCAAT TCT ACAAGGCTTTGAGATTC CAAGAAGTTACTATT Cphy_2304 2840126 - 2836995 - | pullulanase, type I Cphy_2305 2840968 - 2840111 - | hypothetical protein Cphy_2306 2841791 - 2840949 - | binding-protein-dependent transport systems inner membrane component Cphy_2307 2843130 - 2841802 - | binding-protein-dependent transport systems inner membrane component TERM 3184 2842737 - 2842760 + g 100 -7.6 -6.17268 | gap 1 TGAAATATCCGATGC TGGAATCA-AC TTC GTCTGATTCCA TTTTTTTTCTTGTAC TERM 3185 2842838 - 2842816 - G 77 -2.7 -5.42975 | opp_overlap 2842818 2842821, overlap 2842818 2842819 GTACACAAATAAAAA CACCAGCAA AATTG TTGCTGCTA TAATTCCGCTAATGA TERM 3186 2843259 - 2843286 + r 90 -12.6 -3.18199 | overlap 2843211 2843260 TATAGTTTATCTGTC ACCGGGTGCCGC TTAT GCTGCACCCGGA TTGAATTACAGATTA Cphy_2308 2844621 - 2843299 - | extracellular solute-binding protein TERM 3187 2845175 - 2845215 + r 76 -5.6 -5.10064 | gap 1, opp_overlap 2845178, overlap 2845178 AAAAGGTTCTATAAT AAAGGTTGGG-GTGTGT ATCATTTA ACACATTCCCAACCTTC TTTTTATGTATTAAA TERM 3188 2845178 - 2845212 + r 80 -7.3 -4.62708 | gap 1, opp_overlap 2845178, overlap 2845175 AGGTTCTATAATAAA GGTTGGG-GTGTGT ATCATTTA ACACATTCCCAACC TTCTTTTTATGTATT TERM 3189 2845235 - 2845269 + r 95 -4.5 -6.11392 | gap 2, opp_overlap 2845235 TATGTATTAAAAAAA TGTGAGTATGAAAACGA AAT TCGTTT-C-TACCCACA TTTTTTTATTTATTT TERM 3190 2845269 - 2845235 - R 100 -6.7 -5.53991 | gap 2, opp_overlap 2845235 TATGTATTAAAAAAA TGTGAGTATGAAAACGA AAT TCGTTT-C-TACCCACA TTTTTTTATTTATTT Cphy_2309 2846276 - 2845275 - | ribosomal protein L11 methyltransferase TERM 3191 2846382 - 2846397 + r 79 -4.8 -5.23292 | TGTTTCTTATTTCCC GAAAAA TTTC TTTTTC TTTTCTTTTGTATCC Cphy_2310 2847518 - 2846373 - | chaperone protein DnaJ TERM 3192 2847638 - 2847598 - R 93 -11.3 -3.57971 | overlap 2847600 2847628 ACATGTATTCGCAAA TAGCTGTCCTACGATTACC GCC AGTAACCATAAGACAGCTT AGCATACTTTCATAA TERM 3193 2847636 - 2847600 - R 100 -13.9 -3.36694 | overlap 2847598 2847628 ATGTATTCGCAAATA GCTGTCCTACGATTACC GCC AGTAACCATAAGACAGC TTAGCATACTTTCAT TERM 3194 2847851 - 2847837 - R 74 -7.1 -4.07885 | opp_overlap 2847837 TAGGGGTTGCGAAAA GCGCT ACATG AGCGC TTTTTGCTCCAAATT TERM 3195 2847837 - 2847851 + r 80 -7.1 -4.73388 | opp_overlap 2847837 TAGGGGTTGCGAAAA GCGCT ACATG AGCGC TTTTTGCTCCAAATT Cphy_2311 2849727 - 2847865 - | chaperone protein DnaK Cphy_2312 2850622 - 2849948 - | GrpE protein Cphy_2313 2851681 - 2850644 - | heat-inducible transcription repressor HrcA TERM 3196 2851783 - 2851817 + r 79 -8.7 -3.93583 | overlap 2851785 GAACCTTCCGTTTTT GTTGTTAGCACTC ATTGAGGTG GAGTGCTAACATC TTTATACATAAATTA TERM 3197 2851785 - 2851815 + r 84 -9.9 -3.55378 | overlap 2851783 ACCTTCCGTTTTTGT TGTTAGCACTC ATTGAGGTG GAGTGCTAACA TCTTTATACATAAAT Cphy_2314 2853189 - 2851963 - | oxygen-independent coproporphyrinogen III oxidase TERM 3198 2852942 - 2852925 - G 78 -7.7 -4.2349 | opp_overlap 2852930, overlap 2852927 GTTCTAGAGGTAAAA GAGAAGG AGTC CCTCCTC CAAAGAATATCGAGA TERM 3199 2852943 - 2852927 - G 78 -8.7 -3.71913 | opp_overlap 2852930, overlap 2852925 TCTAGAGGTAAAAGA GAAGGAG TCC CTCCTCC AAAGAATATCGAGAC TERM 3200 2852970 - 2852947 - G 72 -8.2 -3.53091 | opp_overlap 2852930 2852950, overlap 2852950 AGTCCCTCCTCCAAA GAATATCGAG ACAA CTCGGTATTC TAAAGGAAGTGACCC Cphy_2315 2855026 - 2853212 - | GTP-binding protein LepA TERM 3201 2855647 - 2855610 - R 100 -13 -4.57209 | opp_overlap 2855610 2855608 2855607 ATATGAATTATAAAA TGTTTGGAAAGCCACA AATCAA TATGACTTTCCAAACA TAATTTTGAATCTCT TERM 3202 2855610 - 2855647 + r 72 -8.6 -3.13068 | opp_overlap 2855610, overlap 2855608 2855607 ATATGAATTATAAAA TGTTTGGAAAGCCACA AATCAA TATGACTTTCCAAACA TAATTTTGAATCTCT Cphy_2316 2857232 - 2855781 - | stage II sporulation P family protein TERM 3203 2857119 - 2857148 + g 73 -9.4 -2.79831 | opp_overlap 2857133 TACACTAGTCATCTG TTCCGAGGCA AATACGACGA TGCCTCGGAA TATAATAAAACTTGC Cphy_2317 2858162 - 2857239 - | germination protease Cphy_2318 2858396 - 2858659 + | ribosomal protein S20 TERM 3204 2858731 - 2858678 - f 71 -8.3 -3.3636 | opp_overlap 2858678, overlap 2858676 TTATAGTATATAATA TGGGAGTGTGATGAAATGAACTCAA ATTC TTGTTTTCATTTCATAGCACTCTCA TTTTTTTACTATTAA TERM 3205 2858678 - 2858731 + F 100 -12.7 -5.63374 | opp_overlap 2858678 2858676 TTATAGTATATAATA TGGGAGTGTGATGAAATGAACTCAA ATTC TTGTTTTCATTTCATAGCACTCTCA TTTTTTTACTATTAA Cphy_2319 2859263 - 2859625 + | GntR family transcriptional regulator Cphy_2320 2859612 - 2860511 + | ABC transporter related TERM 3206 2860559 - 2860548 - gT 74 -3 -5.28315 | AGAAAAGTTAAAAAA CAAA CGAT TTTG GACCATTCTAATTAT Cphy_2321 2860486 - 2862570 + | hypothetical protein TERM 3207 2862678 - 2862721 + T 85 -9.3 -4.11304 | gap 2, opp_overlap 2862678 2862676 TTATTGTTATAAATA GAGCATTGTTACTACTATTCA TTTC TGAGTAGTA--AACAATGCTC TTATTTCTAGCTTGA TERM 3208 2862721 - 2862678 - T 71 -7.8 -3.52906 | gap 1, opp_overlap 2862678, overlap 2862676 TTATTGTTATAAATA GAGCATTG-TTACTACT ATTCATTTCTG AGTAGTAAACAATGCTC TTATTTCTAGCTTGA Cphy_2322 2863749 - 2862787 - | oxidoreductase domain-containing protein Cphy_2323 2864483 - 2864265 - | penicillin binding protein Cphy_2324 2864849 - 2864490 - | CopY family transcriptional regulator TERM 3209 2864977 - 2864948 - R 84 -6.3 -5.24989 | opp_overlap 2864948 TCAGACACGAAAAAA GACGGAAGAGCCC ATAT GAGCTTTGCCGCC TTTCATAAATTATTC Cphy_2325 2866246 - 2864987 - | metal dependent phosphohydrolase Cphy_2326 2867006 - 2866632 - | hypothetical protein TERM 3210 2866858 - 2866836 - G 95 -8.4 -4.7416 | overlap 2866839 CGAAAAGGCGAAAAA CAACGTACCG ACA CGATACGTAG GCATCCGAAACCATA TERM 3211 2866855 - 2866839 - G 90 -8.7 -4.45259 | overlap 2866836 AAAGGCGAAAAACAA CGTACCG ACA CGATACG TAGGCATCCGAAACC Cphy_2327 2867086 - 2867580 + | thioesterase superfamily protein Cphy_2328 2869000 - 2867825 - | transposase IS204/IS1001/IS1096/IS1165 family protein TERM 3212 2869113 - 2869064 - R 85 -8.2 -4.4891 | gap 1, opp_overlap 2869072, overlap 2869071 TTTATTATTATAAAA TAAAAAACGTTGGAGTA-GCGAA TTAAT TTCACATACCCCAACATTTATTA TAGAGCCTTTTTTAA TERM 3213 2869106 - 2869071 - R 100 -6.3 -5.86976 | gap 1, opp_overlap 2869072, overlap 2869064 TTATAAAATAAAAAA CGTTGGAGTA-GCGAA TTAAT TTCACATACCCCAACA TTTATTATAGAGCCT Cphy_2329 2869994 - 2869332 - | deoxyadenosine kinase Cphy_2330 2871740 - 2870292 - | hypothetical protein TERM 3214 2872002 - 2871947 - R 80 -7.1 -4.63184 | opp_overlap 2871947, overlap 2871949 AAGTTAGTTTAAAAA TTCTTTCCTTCATTATGCATCTTGA AATCTA TCTAGACTCATAACAAAGGAAAGGA TCTGTTGATTTAAAA TERM 3215 2872000 - 2871949 - R 74 -9.7 -2.61831 | opp_overlap 2871947, overlap 2871947 GTTAGTTTAAAAATT CTTTCCTTCATTATGCATCTTGA AATCTA TCTAGACTCATAACAAAGGAAAG GATCTGTTGATTTAA Cphy_2331 2873976 - 2872033 - | pullulanase, type I TERM 3216 2874042 - 2874078 + r 90 -11.1 -3.91144 | opp_overlap 2874044 CTGTATTAATTACTA TAGTTTTCGAATACTAT TTC ATTGTTTTCGAAAACTA TTTCTCGCATATAGA TERM 3217 2874076 - 2874044 - R 73 -9.3 -2.87136 | opp_overlap 2874042 GTATTAATTACTATA GTTTTCGAATACTAT TTC ATTGTTTTCGAAAAC TATTTCTCGCATATA TERM 3218 2874424 - 2874382 - R 100 -6.6 -5.65177 | gap 1 ATATCCACAAAAAAA TGGCCGTTACAGTTATT GAATTCAAGA AATAAC-GTAACAGCCA TAAAGATTTATTTAA Cphy_2332 2875661 - 2874432 - | Beta-N-acetylhexosaminidase TERM 3219 2875448 - 2875460 + g 82 -7.7 -4.45083 | GCATACTTTCCGATT CTTCC TCT GGAAG TTTTGTAGGTATCGC TERM 3220 2875956 - 2875904 - R 100 -16.6 -4.44448 | opp_overlap 2875908 2875909 2875913, overlap 2875909 2875913 ATGAGTCCAAATAAA TTGAAGAAAGAGTACTCCAAAAGC ACATA GCTTTTGGAGTACTCTTTCGTTAT TCGCAAAAATTTGCA TERM 3221 2875908 - 2875952 + r 100 -21.8 -3.61894 | opp_overlap 2875904 2875909 2875913, overlap 2875909 2875913 GTCCAAATAAATTGA AGAAAGAGTACTCCAAAAGC ACATA GCTTTTGGAGTACTCTTTCG TTATTCGCAAAAATT TERM 3222 2875909 - 2875951 + r 100 -25.3 -2.76815 | opp_overlap 2875909 2875904 2875913, overlap 2875908 2875913 TCCAAATAAATTGAA GAAAGAGTACTCCAAAAGC ACATA GCTTTTGGAGTACTCTTTC GTTATTCGCAAAAAT TERM 3223 2875951 - 2875909 - R 100 -25.3 -3.41807 | opp_overlap 2875908 2875909 2875913, overlap 2875904 2875913 TCCAAATAAATTGAA GAAAGAGTACTCCAAAAGC ACATA GCTTTTGGAGTACTCTTTC GTTATTCGCAAAAAT TERM 3224 2875947 - 2875913 - R 100 -20.3 -4.31837 | opp_overlap 2875909 2875908 2875913, overlap 2875909 2875904 AATAAATTGAAGAAA GAGTACTCCAAAAGC ACATA GCTTTTGGAGTACTC TTTCGTTATTCGCAA TERM 3225 2875913 - 2875947 + r 100 -20.3 -4.07618 | opp_overlap 2875913 2875909 2875904, overlap 2875909 2875908 AATAAATTGAAGAAA GAGTACTCCAAAAGC ACATA GCTTTTGGAGTACTC TTTCGTTATTCGCAA Cphy_2333 2876390 - 2875953 - | GatB/YqeY domain-containing protein Cphy_2334 2876608 - 2877192 + | GTP cyclohydrolase I Cphy_2335 2877189 - 2877965 + | hypothetical protein TERM 3226 2878083 - 2878127 + T 93 -10.9 -3.97209 | opp_overlap 2878089 2878097, overlap 2878089 TTTATATTAGGCAAT TACAGAGGATTGAATCCTGTA TTA TACAGGATTCAGTCCTTTCCG TTTGATCTTGATTCG TERM 3227 2878121 - 2878089 - T 100 -16.5 -3.0127 | opp_overlap 2878089 2878083, overlap 2878097 TTAGGCAATTACAGA GGATTGAATCCTGTA TTA TACAGGATTCAGTCC TTTCCGTTTGATCTT TERM 3228 2878089 - 2878121 + T 100 -18.7 -3.88823 | opp_overlap 2878089 2878097, overlap 2878083 TTAGGCAATTACAGA GGATTGAATCCTGTA TTA TACAGGATTCAGTCC TTTCCGTTTGATCTT TERM 3229 2878113 - 2878097 - T 76 -9.5 -3.12606 | opp_overlap 2878089 2878083, overlap 2878089 TTACAGAGGATTGAA TCCTGTA TTA TACAGGA TTCAGTCCTTTCCGT Cphy_2336 2880664 - 2878244 - | glycosyl transferase group 1 TERM 3230 2878813 - 2878831 + g 84 -7.5 -4.70319 | AAAGCTCTGTCTCCT CTTCCAT AACAA ATGGAAG TTTTGCTTTTACTAA TERM 3231 2881116 - 2881065 - R 100 -11.2 -4.77173 | opp_overlap 2881064 2881069, overlap 2881069 TGTGTATAAAATAAA GAAACCTTATTTGTAACATTATCG TACT CAATAATCATACAAATTAGGTTTC CCTCTCTTTTATTCA TERM 3232 2881112 - 2881069 - R 80 -6.2 -4.91046 | opp_overlap 2881064 2881069, overlap 2881065 TATAAAATAAAGAAA CCTTATTTGTAACATTATCG TACT CAATAATCATACAAATTAGG TTTCCCTCTCTTTTA TERM 3233 2881214 - 2881170 - R 87 -11.8 -2.72991 | opp_overlap 2881175 2881196, overlap 2881172 2881178 GCACATTTTTAATCA TATTACAAGGAAAAGTAC GACCATCAG GAACTTTTCCTTGTAATA TACATGCCTATTATA TERM 3234 2881212 - 2881172 - R 79 -10 -2.90901 | opp_overlap 2881175 2881196, overlap 2881170 2881178 ACATTTTTAATCATA TTACAAGGAAAAGTAC GACCATCAG GAACTTTTCCTTGTAA TATACATGCCTATTA Cphy_2337 2882073 - 2881225 - | diaminopimelate epimerase TERM 3235 2882932 - 2882921 - g 77 -3 -5.47218 | CGGTAGCGAAAAAAA GTAA TCTT TTAC GAGCTGAAGCGAAAT Cphy_2338 2882581 - 2883465 + | AraC family transcriptional regulator TERM 3236 2883502 - 2883479 - T 100 -8.8 -5.41143 | opp_overlap 2883479 GATCTGTTAAAAAAA GACCTCCTAG TTCA CCCGGAGGTC TTTTTAAATCTCTTA TERM 3237 2883479 - 2883502 + T 83 -6.6 -4.74453 | opp_overlap 2883479 GATCTGTTAAAAAAA GACCTCCTAG TTCA CCCGGAGGTC TTTTTAAATCTCTTA Cphy_2339 2884353 - 2883550 - | hypothetical protein TERM 3238 2884351 - 2884339 - G 78 -7.7 -4.24711 | TAAAAGCTTAACAAA GGAAG TAC CTTCC ACATTAGCTGAAGAA Cphy_2340 2885246 - 2884437 - | ABC-type transport system involved in lipoprotein release permease component-like protein TERM 3239 2885526 - 2885497 - R 87 -5.2 -5.65177 | gap 1, opp_overlap 2885514 ATATTTATAAAAAAA CAGACTTAAATCT GCCAT AGACT-AAGTCTG CTTAATAATACGATT Cphy_2341 2887212 - 2885548 - | alpha amylase catalytic region TERM 3240 2885723 - 2885744 + g 75 -7.3 -4.26351 | TCCTCATACTCTCTA GTGTAAGCA TAGA TGCTTTCAC TTTCTTCCATTAATA TERM 3241 2885779 - 2885793 + g 100 -7.8 -5.56112 | opp_overlap 2885779 2885778 2885781 ATAATCACCATAAAT GAGGCC TGT GGTCTC TTTTTTAATTTTTAT TERM 3242 2887331 - 2887369 + r 89 -11.8 -3.32343 | opp_overlap 2887334, overlap 2887334 TTTGTGTGAGATTTA GAAGTTCTTCGGCACC GTATTGA GGTGCCTTAGAACTTC TTCTCACACTATACC TERM 3243 2887334 - 2887366 + r 74 -7.7 -3.80174 | opp_overlap 2887334, overlap 2887331 GTGTGAGATTTAGAA GTTCTTCGGCACC GTATTGA GGTGCCTTAGAAC TTCTTCTCACACTAT TERM 3244 2887366 - 2887334 - R 71 -7.7 -3.39327 | opp_overlap 2887331 2887334 GTGTGAGATTTAGAA GTTCTTCGGCACC GTATTGA GGTGCCTTAGAAC TTCTTCTCACACTAT Cphy_2342 2888994 - 2887378 - | alpha amylase catalytic region TERM 3245 2887960 - 2887946 - G 70 -8.6 -2.99471 | TCACCCTGATATATA TAAGGG GTA CCCTTA AGCCCATGCAGAAGT Cphy_2343 2891253 - 2889298 - | glycogen debranching enzyme TERM 3246 2891533 - 2891490 - R 70 -8.2 -3.08996 | gap 1, opp_overlap 2891488 2891491 2891500 CATGTCTATTCAATA GGTCGGAAGATTGTGCCTAGG ATA CGAAGGCACAATCTTC-ACCC GTTTATCATTTATTT Cphy_2344 2893270 - 2891543 - | alpha amylase catalytic region TERM 3247 2893486 - 2893524 + r 86 -9.7 -4.14392 | opp_overlap 2893482 2893486 2893490, overlap 2893470 2893490 TCTGTGTGAAACTTA GAAATTCTTAGTCAGCG TATTT TGCTGACATAGAATTTC TTTTCACACTTCACA TERM 3248 2893524 - 2893486 - R 72 -9 -2.64155 | opp_overlap 2893470 2893486 2893490, overlap 2893482 2893490 TCTGTGTGAAACTTA GAAATTCTTAGTCAGC GTATTTT GCTGACATAGAATTTC TTTTCACACTTCACA TERM 3249 2893588 - 2893558 - R 85 -7 -5.00895 | opp_overlap 2893558 TCCATTATATAAAAA GAAGTACTGAAA CGAAATC TTACAGTACTTC TTTTTACTATTTAAA TERM 3250 2893558 - 2893588 + r 85 -7 -4.93696 | opp_overlap 2893558 TCCATTATATAAAAA GAAGTACTGAAA CGAAATC TTACAGTACTTC TTTTTACTATTTAAA Cphy_2345 2894530 - 2893664 - | binding-protein-dependent transport systems inner membrane component Cphy_2346 2895924 - 2894530 - | fructose-bisphosphate aldolase TERM 3251 2895580 - 2895568 - G 70 -2.7 -5.098 | TAAAAACAAAATAAA TCCAA GAG TTAGA ACTATGGTGATAACA TERM 3252 2895982 - 2895952 - R 89 -11.1 -3.68024 | opp_overlap 2895951 2895952 TTTCTTAAGATAGAA GGGGGAGCTGCAA GTTAT TCGCAGCCTCCCC ATTTACAATATATTT TERM 3253 2895952 - 2895982 + r 75 -9.6 -2.8005 | opp_overlap 2895952, overlap 2895951 TTTCTTAAGATAGAA GGGGGAGCTGCAAG TTA TTCGCAGCCTCCCC ATTTACAATATATTT Cphy_2347 2897355 - 2896060 - | extracellular solute-binding protein TERM 3254 2896384 - 2896348 - G 77 -10.9 -2.53263 | opp_overlap 2896360, overlap 2896357 2896358 TTCACTTCCAAGGTA TGCAGCAAACGCTACTG CTA CAGCAGGATTAGCTGCA TGAGAGTTAACACCG TERM 3255 2897123 - 2897133 + g 70 -5.4 -4.46926 | overlap 2897131 CATTCTGGGTGTAAT TCCT GGA AGGA TTTTGTCATAGAATC Cphy_2348 2899787 - 2897538 - | glycogen/starch/alpha-glucan phosphorylase TERM 3256 2897606 - 2897623 + g 81 -7.1 -4.67168 | AGAAGCCGGCTTTAC TGATGTT TTCT AACATCA TTTTTGACCATTTTT TERM 3257 2897650 - 2897662 + g 74 -4.9 -4.86216 | overlap 2897647 TTTTCTCTATCTTCG TAATC TGC GATTA TTTCTTCTTTTTTCT Cphy_2349 2901263 - 2899812 - | 4-alpha-glucanotransferase Cphy_2350 2903071 - 2901320 - | alpha amylase catalytic region TERM 3258 2901523 - 2901536 + g 73 -5.3 -4.5815 | overlap 2901529 TAAAATGATAATGTC TGCTT TTGA AAGCA TTGTTTGTTTTTCTT TERM 3259 2902638 - 2902655 + g 72 -8.5 -3.55444 | opp_overlap 2902638 2902637 CGTTCCGGAAAAATC TGATACC ATAC GGTATCA TTTACCCAGTCAGGA Cphy_2351 2904213 - 2903218 - | LacI family transcription regulator TERM 3260 2904463 - 2904414 - R 100 -11.5 -4.74706 | opp_overlap 2904428 2904429 2904431 TTTAATATGTAAAAA GGAGCTCTTGCTCGATAGCTGAT TTAC ATCAGCTACTTTGCAAAAGCCCC ATTCAAACAAAAATT TERM 3261 2904429 - 2904448 + r 74 -9.4 -2.71712 | opp_overlap 2904414, overlap 2904428 2904431 GGAGCTCTTGCTCGA TAGCTGAT TTAC ATCAGCTA CTTTGCAAAAGCCCC Cphy_2352 2905811 - 2904477 - | aspartate kinase TERM 3262 2905001 - 2905017 + g 75 -9.5 -3.15544 | CATTATCCTCTGGAG CATTCGT ATT ACGAATG TTGATAGGAATACCC Cphy_2353 2906185 - 2907177 + | LacI family transcription regulator Cphy_2354 2907831 - 2907502 - | CopY family transcriptional regulator TERM 3263 2907639 - 2907653 + g 80 -10 -3.52204 | ATAACACCTTTGTTT CCGTAC GTT GTACGG TTCGTTTGGAGATAG Cphy_2355 2909308 - 2908013 - | AAA family ATPase Cphy_2356 2910250 - 2909309 - | RluA family pseudouridine synthase Cphy_2357 2910886 - 2910362 - | lipoprotein signal peptidase TERM 3264 2910650 - 2910635 - G 85 -4 -5.75538 | TTTAAAAAATAAAAA TGCCAT AACG ATGACA GCTACTACAGTAATA Cphy_2358 2911996 - 2910893 - | 3-dehydroquinate synthase Cphy_2359 2912949 - 2912011 - | DivIVA family protein TERM 3265 2912241 - 2912269 + g 73 -5.4 -4.61824 | gap 1, opp_overlap 2912243 2912245, overlap 2912243 TTTTATTATTCATGA CA-GACGAATTAG CTTG CCAATTCGTCTTG TTTTGATTCTTATTA TERM 3266 2912266 - 2912243 - G 77 -10.4 -2.81464 | opp_overlap 2912241 2912243, overlap 2912245 TTATTATTCATGACA GACGAATTAG CTTG CCAATTCGTC TTGTTTTGATTCTTA TERM 3267 2912243 - 2912266 + g 86 -8.2 -4.38092 | opp_overlap 2912243 2912245, overlap 2912241 TTATTATTCATGACA GACGAATTAG CTTG CCAATTCGTC TTGTTTTGATTCTTA Cphy_2360 2913753 - 2912962 - | RNA-binding S4 domain-containing protein Cphy_2361 2914652 - 2914032 - | hypothetical protein Cphy_2362 2915435 - 2914674 - | alanine racemase domain-containing protein TERM 3268 2914785 - 2914803 + g 86 -4.6 -5.65513 | opp_overlap 2914793 2914798, overlap 2914778 CATCGAAAGTATTTT CATAGATA CAT TATCAATG TTTTTTTCATTGATG Cphy_2363 2916896 - 2915508 - | hypothetical protein TERM 3269 2916782 - 2916764 - G 76 -6 -4.70879 | overlap 2916756 CTGAAACTTCAAAAA TCGAAATC TGA GGTTTCGA TAAATATAAATACAC Cphy_2364 2917000 - 2917203 + | hypothetical protein TERM 3270 2917235 - 2917217 - T 75 -9.6 -2.94137 | opp_overlap 2917217, overlap 2917216 AATCATGTTACAAAG TGAGGAGC TTA ACTCCTCA TACATTACGAATAAG TERM 3271 2917217 - 2917235 + T 71 -8.9 -2.53263 | opp_overlap 2917216 2917217 AATCATGTTACAAAG TGAGGAG CTTAA CTCCTCA TACATTACGAATAAG TERM 3272 2917330 - 2917284 - T 93 -9 -4.80178 | gap 1, opp_overlap 2917293, overlap 2917293 2917296 CACTAATTAACAAAA CAGTCATAATGACTGGACAGT TTAACG ACTGGACAGTCATTAT-ACTG GCTAGTAAAAAGAAT TERM 3273 2917414 - 2917360 - T 82 -9.5 -3.61244 | gap 1, opp_overlap 2917360 TATTTCATAAAGGAA GCGGTTTTACACT-AATCTACGGAGT ATTG ATTCCGTAATTGAAGTGCAAAACCGC TTTCTTGGAAACTAA TERM 3274 2917360 - 2917414 + T 80 -7.6 -4.16016 | gap 3, opp_overlap 2917360 TATTTCATAAAGGAA GCGGTTTTACAC-T-AATCTACGGAGT ATTG ATTCCGTA-ATTGAAGTGCAAAACCGC TTTCTTGGAAACTAA TERM 3275 2917426 - 2917448 + T 83 -7 -4.90381 | opp_overlap 2917426 2917432 CCGCTTTCTTGGAAA CTAAAATGGC GAA GCCGCTTTAG TTTTATTATCTTAAA Cphy_2365 2917923 - 2917459 - | hypothetical protein TERM 3276 2917717 - 2917733 + g 76 -5.2 -4.91987 | AATACAATAATCTTT TACGTT AATCA AACGTA TTTTATTATTGAGTT Cphy_2366 2919057 - 2918029 - | Serine-type D-Ala-D-Ala carboxypeptidase Cphy_2367 2919436 - 2919035 - | methylglyoxal synthase Cphy_2368 2920627 - 2919458 - | cell cycle protein TERM 3277 2920110 - 2920100 - G 74 -4 -5.1104 | AAACATACATAAAAA TGTT GCA AACA ATACAATACTTACTG TERM 3278 2920435 - 2920409 - G 70 -6.6 -4.17132 | AAACTTGGCAACAAA GTGGTAGTCT ATAAGTG AGACAACCAC CGCAACAATTAAACC Cphy_2369 2920912 - 2920640 - | cell division topological specificity factor MinE TERM 3279 2920780 - 2920790 + g 75 -5.4 -4.87807 | ATTTTGATATCACAG CGAT AAT ATCG TTTTTAATCTGTTCC Cphy_2370 2921708 - 2920926 - | septum site-determining protein MinD TERM 3280 2921763 - 2921740 - R 74 -9 -3.13109 | overlap 2921739 TATATGATTTAAAAT TACATGCAAC ATAA GTTACATGTA GTAAGTAAAAACAAA Cphy_2371 2922449 - 2921784 - | septum site-determining protein MinC Cphy_2372 2925378 - 2922529 - | penicillin-binding protein transpeptidase TERM 3281 2924675 - 2924692 + g 70 -5.5 -4.43477 | overlap 2924677 AACTTTACTTCGACC CCTGGCA TATC TGCCAAG TTTTCCTTCACTGCC Cphy_2373 2925887 - 2925378 - | hypothetical protein TERM 3282 2925554 - 2925534 - G 79 -4.7 -5.11063 | ACCACGTAATAAAAA TTCCGCTAC ATA GTAGAAGAA ACAATATACAAATTC Cphy_2374 2926777 - 2925917 - | rod shape-determining protein MreC TERM 3283 2926815 - 2926825 + r 71 -5.4 -4.5954 | overlap 2926802 TTGCGCATGATTTGC GCTT AAT AAGC TTTTCTGTGATCTCA TERM 3284 2926865 - 2926895 + r 95 -10.7 -4.21462 | gap 1, opp_overlap 2926872 2926874, overlap 2926867 2926869 GAATAACACCAATTG CA-TATCACATCTG CGCG CAGATGTGATACTG TTTTAAATAATAAGT TERM 3285 2926867 - 2926892 + r 100 -13.5 -2.81922 | opp_overlap 2926872 2926874, overlap 2926865 2926869 ATAACACCAATTGCA TATCACATCTG CGCG CAGATGTGATA CTGTTTTAAATAATA TERM 3286 2926869 - 2926890 + r 88 -11.7 -2.95081 | opp_overlap 2926872 2926874, overlap 2926867 2926865 AACACCAATTGCATA TCACATCTG CGCG CAGATGTGA TACTGTTTTAAATAA Cphy_2375 2928047 - 2927022 - | cell shape determining protein MreB/Mrl Cphy_2376 2928804 - 2928106 - | DNA repair protein RadC Cphy_2377 2929115 - 2928840 - | hypothetical protein Cphy_2378 2930600 - 2929296 - | aluminium resistance family protein Cphy_2379 2931585 - 2930644 - | tRNA delta(2)-isopentenylpyrophosphate transferase TERM 3287 2931602 - 2931655 + r 79 -10.7 -2.50922 | opp_overlap 2931613, overlap 2931601 2931613 2931632 TAATTCACCTCAATT TCTTATAGCAATACTATAGCACT CGCTTTTT ATTGCTATAGTATTGCTATAGCA CTCTCTTAAATTTTT Cphy_2380 2933735 - 2931648 - | DNA mismatch repair protein MutL Cphy_2381 2936566 - 2933768 - | DNA mismatch repair protein MutS Cphy_2382 2937121 - 2936645 - | ribonuclease H TERM 3288 2937050 - 2937076 + g 74 -10.2 -2.69601 | opp_overlap 2937050, overlap 2937047 2937046 ATCTATATAAGATAA GATGGTTCCG TATCCAC CGGGACCATC TGGGTTTCCTCTGGC TERM 3289 2937076 - 2937050 - G 72 -8 -3.80276 | opp_overlap 2937050 2937047 2937046 ATCTATATAAGATAA GATGGTTCCG TATCCAC CGGGACCATC TGGGTTTCCTCTGGC TERM 3290 2937164 - 2937140 - R 70 -7.2 -3.72027 | opp_overlap 2937127 2937143, overlap 2937126 2937127 2937143 ATCCTCCATTAAGAA GGAGGTTATC TATTC GATAACCTTC CATTCCCCATTCTCT Cphy_2383 2938825 - 2937149 - | DNA mismatch repair protein MutS domain-containing protein TERM 3291 2938552 - 2938568 + g 75 -8.7 -3.62096 | AATATTCTTCACCAG CAGCACT ACA GGTGCTG TTTACCGTCATAAAA TERM 3292 2938905 - 2938930 + r 71 -7.8 -3.39895 | opp_overlap 2938908, overlap 2938908 ACTTAATCCATTGCA TAACAAATCT ACTTGC AGATTTGTTA TTCCTTAATAAAAAG TERM 3293 2938966 - 2938945 - R 80 -6 -5.06816 | ATTCCTTAATAAAAA GTATGAAA TGTTTT TTTCATAC TAAACTCGTTGCATA TERM 3294 2939072 - 2939052 - R 80 -7.5 -4.16943 | overlap 2939054 TTTCACACTTGAAAA CATGCCACC AAA GGCGGCACA AACATGCATTAAACC TERM 3295 2939070 - 2939054 - R 86 -10.1 -3.68378 | overlap 2939052 TCACACTTGAAAACA TGCCACC AAA GGCGGCA CAAACATGCATTAAA TERM 3296 2939246 - 2939206 - R 79 -8.4 -3.97834 | gap 1, opp_overlap 2939206 2939204 CAATGGTATTATAAA GGGCGTCGAA-ACAGAAAT TAAT ATATCTGAATTCGACACCC TATTATTCTACTGTA Cphy_2384 2940348 - 2939254 - | NLP/P60 protein TERM 3297 2940788 - 2940752 - R 100 -8.8 -5.86976 | opp_overlap 2940751 2940752 CTATAAAATAAAAAA GTGCTGTCTCACTAGC TACAC ACTAATGAGGCAACAC CTTTCCCGCAAAAAT Cphy_2385 2942294 - 2940819 - | stage IV sporulation protein A TERM 3298 2941504 - 2941514 + g 74 -4 -5.23316 | ATCTCTTTCGCTGTT TCAA TAA TTGA TTTTTTAATGTAATG TERM 3299 2942346 - 2942300 - R 100 -12 -3.83226 | gap 1, overlap 2942302 AATTATCCATAACAA TACCCCTTCCATATA-ATTAC AAGCTA GTAATATATATGAAAGGGGCA AGCAAAATATTCTTA TERM 3300 2942344 - 2942302 - R 91 -12.4 -3.49568 | gap 1, overlap 2942300 TTATCCATAACAATA CCCCTTCCATATA-ATTAC AAGCTA GTAATATATATGAAAGGGG CAAGCAAAATATTCT Cphy_2386 2942988 - 2942359 - | uridine kinase Cphy_2387 2943665 - 2943024 - | hypothetical protein Cphy_2388 2944686 - 2943682 - | glycerol-3-phosphate dehydrogenase (NAD(P)(+)) TERM 3301 2944196 - 2944215 + g 76 -6.5 -4.41528 | opp_overlap 2944196 2944195 CAATCATTCATAAAT GCATCTT GGATTA AAGATGC TGTTTTTTTCGATTT Cphy_2389 2945370 - 2944741 - | hypothetical protein Cphy_2390 2946717 - 2945392 - | small GTP-binding protein TERM 3302 2946733 - 2946746 + r 76 -9.5 -3.09288 | overlap 2946732 TTAAACCTCTATTCT GGCGC TTTT GCGCC CTTTATTAACGAATC Cphy_2391 2948218 - 2946866 - | hypothetical protein Cphy_2392 2948617 - 2949789 + | periplasmic binding protein TERM 3303 2949831 - 2949848 + G 81 -2.7 -5.7827 | CAAATCAAATCTAAT GGAGT TCTAAACC ACTCC TTTTTTCTTTCTGTT TERM 3304 2950185 - 2950196 + G 71 -4.4 -4.8622 | CTCTTATTTAGCTTA TTGC CAGG GCAA TTTTTGCTTGCACCA Cphy_2393 2949786 - 2950859 + | transport system permease protein TERM 3305 2951278 - 2951256 - g 83 -9.2 -3.89435 | TGGAAAGAATGTAAA GACATTATCC GGT GGAGAATGTC AAAGAGTATATCTCG Cphy_2394 2950852 - 2951610 + | ABC transporter related TERM 3306 2952477 - 2952497 + G 74 -2.6 -5.31855 | overlap 2952479 ATGAATTTCTTGGCT CCTCTTTA GAAGG TAAAGATG TTTTTATTGTTGATG Cphy_2395 2951678 - 2952850 + | phosphoribosylpyrophosphate synthetase TERM 3307 2952901 - 2952854 - f 80 -7.8 -4.15884 | opp_overlap 2952856 2952858, overlap 2952855 2952858 CGAATGAAATAAGAA TCTACTACCTCTGCCAAGGTAT TCTA ATACCTTAGTAGAGGTAGTCTT TTTTTCTCCACAAGG TERM 3308 2952900 - 2952855 - f 87 -11.3 -3.08446 | opp_overlap 2952856 2952858, overlap 2952854 2952858 GAATGAAATAAGAAT CTACTACCTCTGCCAAGGTAT TCTA ATACCTTAGTAGAGGTAGTCT TTTTTTCTCCACAAG TERM 3309 2952856 - 2952899 + F 100 -14.8 -5.60993 | opp_overlap 2952855 2952854 2952858, overlap 2952858 AATGAAATAAGAATC TACTACCTCTGCCAAGGTAT TCTA ATACCTTAGTAGAGGTAGTC TTTTTTTCTCCACAA TERM 3310 2952897 - 2952858 - f 100 -17.4 -2.7369 | opp_overlap 2952858 2952856, overlap 2952855 2952854 TGAAATAAGAATCTA CTACCTCTGCCAAGGTAT TCTA ATACCTTAGTAGAGGTAG TCTTTTTTTCTCCAC TERM 3311 2952858 - 2952897 + F 100 -17.4 -4.45201 | opp_overlap 2952855 2952854 2952858, overlap 2952856 TGAAATAAGAATCTA CTACCTCTGCCAAGGTAT TCTA ATACCTTAGTAGAGGTAG TCTTTTTTTCTCCAC Cphy_2396 2952992 - 2953633 + | hypothetical protein TERM 3312 2953787 - 2953767 - T 100 -9.8 -5.26875 | opp_overlap 2953767 TGCTGAAGCAAAAAA GGACAGAA ATCAA TTCTGTCC TTTTCTATCGCTTAC TERM 3313 2953767 - 2953787 + T 93 -9.8 -4.57474 | opp_overlap 2953767 TGCTGAAGCAAAAAA GGACAGAA ATCAA TTCTGTCC TTTTCTATCGCTTAC Cphy_2397 2954848 - 2953967 - | hypothetical protein TERM 3314 2954781 - 2954805 + g 71 -7.2 -3.90762 | opp_overlap 2954783, overlap 2954779 2954783 TGCTCTAATATAGGA AAGGAAACGT AAGGA ACGTTTCCTA TGTTTTTCAGCACTG TERM 3315 2954783 - 2954803 + g 80 -9.8 -3.53855 | opp_overlap 2954783, overlap 2954781 2954779 CTCTAATATAGGAAA GGAAACGT AAGGA ACGTTTCC TATGTTTTTCAGCAC TERM 3316 2954803 - 2954783 - G 85 -9.8 -3.93262 | opp_overlap 2954783 2954781 2954779 CTCTAATATAGGAAA GGAAACGT AAGGA ACGTTTCC TATGTTTTTCAGCAC Cphy_2398 2955324 - 2954968 - | hypothetical protein Cphy_2399 2955685 - 2955317 - | flagellar protein FhlB-like protein TERM 3317 2955782 - 2955797 + r 90 -9 -4.66833 | AATCGGATATTCTCA CTTGCC TACA GGCAAG TTTTTCCGCTTACAC TERM 3318 2955833 - 2955845 + r 72 -9.1 -2.71791 | opp_overlap 2955826, overlap 2955832 GCTCATAACCTCATA GCCAC TAC GTGGC ATTTCAGCAGGAGGT Cphy_2400 2956613 - 2955849 - | ribonuclease H Cphy_2401 2957496 - 2956618 - | GTP-binding protein HSR1-related Cphy_2402 2958216 - 2957572 - | signal peptidase I TERM 3319 2958399 - 2958375 - R 71 -2.3 -5.38497 | opp_overlap 2958381, overlap 2958381 ATTGAAACCAAAAAA TATAAATTACA AGG TAAAATTTATA TTTCAGAACCAGCTA TERM 3320 2958457 - 2958501 + r 74 -8.7 -3.36078 | gap 2, opp_overlap 2958457, overlap 2958455 CCAATTTCAAAAAAA GAGGGAGCT-CAAAGTG-CAG ATTCC CTGACGCTTTGTGGCACCCTC TCTTATGCTTACTTT TERM 3321 2958501 - 2958457 - R 82 -5 -5.47399 | gap 2, opp_overlap 2958457 2958455 CCAATTTCAAAAAAA GAGGGAGC-TCAAAGTG-CAGA TTC CCTGACGCTTTGTGGCACCCTC TCTTATGCTTACTTT Cphy_2403 2958937 - 2958590 - | ribosomal protein L19 Cphy_2404 2960580 - 2959258 - | MATE efflux family protein TERM 3322 2960159 - 2960148 - G 78 -3.6 -5.32599 | CAGAAAACATAAAAA CAGG AGCA CCCG CCACTAATGTTCTTC TERM 3323 2960319 - 2960333 + g 73 -8.6 -3.29211 | overlap 2960314 AATACTGCTTTCCAA GTAACG AAT CGTTAC TTCCATTTGCAATTG TERM 3324 2960718 - 2960679 - R 100 -8 -5.58179 | TATCACAACAAAAAA CTGGATAATCCAGTTGAA AGTC TCCAACTATCTTATCCAG AATATAAAATCTATA Cphy_2405 2961656 - 2960829 - | tRNA (guanine-N1)-methyltransferase TERM 3325 2961098 - 2961116 + g 70 -9 -3.06162 | opp_overlap 2961102, overlap 2961102 CAGAGGCATTGTTAT TTAATACC CCA GGTATTAA TCTTGAAATCGCATC TERM 3326 2961709 - 2961678 - R 100 -14.8 -3.41878 | opp_overlap 2961686, overlap 2961686 TCCTCCAAGGTAGAA GTGTAAAAGAAAAT AAAA ATTTTCTTTTACAC AGAAGTTTGTGCCTG TERM 3327 2961746 - 2961711 - R 86 -11.3 -2.87211 | gap 1, overlap 2961714 ATTTTCTTTTACACA GAAGTTTGTGCCTGCG TCGTC CTC-GGCACAAACTTC CAGCCTACTGACGGG TERM 3328 2961743 - 2961714 - R 70 -7.2 -3.58726 | gap 1, overlap 2961711 TTCTTTTACACAGAA GTTTGTGCCTGCG TCGTC CTC-GGCACAAAC TTCCAGCCTACTGAC Cphy_2406 2962303 - 2961794 - | 16S rRNA processing protein RimM TERM 3329 2962485 - 2962436 - R 100 -10.3 -5.9663 | gap 1, opp_overlap 2962452 AAAGATGAAAAAAAA CACAGCAAACCAATC-AATTAGAG TAG CTCTAACTAAATTAGCCTGCTGCG CACATTCTAAAGCTG Cphy_2407 2962774 - 2962544 - | RNA binding protein Cphy_2408 2963036 - 2962791 - | ribosomal protein S16 Cphy_2409 2964591 - 2963227 - | signal recognition particle protein Cphy_2410 2965071 - 2964691 - | putative helix-turn-helix protein YlxM/p13 family protein TERM 3330 2965173 - 2965195 + r 73 -7.8 -3.58208 | opp_overlap 2965169 2965166, overlap 2965169 TCATCGAATCACCAT CTGTAAAGTA ATT TTCTTTACAG TTAGTTATTATAAAA Cphy_2411 2965683 - 2965324 - | glyoxalase/bleomycin resistance protein/dioxygenase Cphy_2412 2966631 - 2965828 - | hypothetical protein Cphy_2413 2967021 - 2966698 - | hypothetical protein Cphy_2414 2968117 - 2967035 - | hypothetical protein TERM 3331 2967210 - 2967181 - G 90 -13.1 -2.81888 | opp_overlap 2967179 2967178 2967187, overlap 2967188 2967189 GTGCAAATGTAAGTA TTCCAAATGCAAA TCCC TTCGCATTTGGAA GGATTTGCGATATGA TERM 3332 2967669 - 2967652 - G 70 -3.5 -4.94487 | gap 1, overlap 2967655 TGATAAAAGATAAAA TGATTAGG ACA CCTAA-CA CCCAATAAATAGGTA Cphy_2415 2968345 - 2969244 + | hypothetical protein Cphy_2416 2970092 - 2969331 - | extradiol ring-cleavage dioxygenase class III protein subunit B TERM 3333 2969504 - 2969514 + g 75 -5.4 -4.78933 | overlap 2969468 AAGAAAATAACTCCT CAAG GTT CTTG TTTTCTATCTTTTCA Cphy_2417 2971149 - 2970301 - | GCN5-related N-acetyltransferase TERM 3334 2971247 - 2971305 + r 71 -8.1 -3.30006 | opp_overlap 2971255, overlap 2971255 2971257 2971264 CTACCTACGAATAAA TAAGA-AAAGAGATATAAGAATTAATTAT CCT ATAAT-AATTCTTATATCTCTATATCCTA TTAATGTAAATTAAT TERM 3335 2971255 - 2971296 + r 100 -14.3 -3.01637 | gap 1, opp_overlap 2971255, overlap 2971247 2971257 2971264 GAATAAATAAGAAAA GAGATATAAGAATTAATTAT CCT ATAAT-AATTCTTATATCTC TATATCCTATTAATG TERM 3336 2971296 - 2971255 - R 100 -14.3 -5.08731 | gap 1, opp_overlap 2971247 2971255 2971257 2971264 GAATAAATAAGAAAA GAGATATAAGAATTAATTAT CCT ATAAT-AATTCTTATATCTC TATATCCTATTAATG TERM 3337 2971257 - 2971294 + r 84 -11.1 -3.05727 | gap 1, opp_overlap 2971255, overlap 2971255 2971247 2971264 ATAAATAAGAAAAGA GATATAAGAATTAATTAT CCT ATAAT-AATTCTTATATC TCTATATCCTATTAA Cphy_2418 2972706 - 2971306 - | aldehyde dehydrogenase Cphy_2419 2973301 - 2973690 + | hypothetical protein Cphy_2420 2973710 - 2974153 + | hypothetical protein Cphy_2421 2974606 - 2974827 + | membrane protein TERM 3338 2974930 - 2974909 - T 74 -6.5 -4.46254 | opp_overlap 2974909 CTAACATACAACAAA CCCACTGCA ATGA CGTAGTGGG TTGTTTGCTTGCCTG TERM 3339 2974909 - 2974930 + T 79 -8 -4.09321 | opp_overlap 2974909 CTAACATACAACAAA CCCACTGC AATGAC GTAGTGGG TTGTTTGCTTGCCTG Cphy_2422 2975700 - 2974984 - | tRNA/rRNA methyltransferase (SpoU) Cphy_2423 2976674 - 2975784 - | hypothetical protein Cphy_2424 2976818 - 2977018 + | XRE family transcriptional regulator Cphy_2425 2977063 - 2977500 + | hypothetical protein TERM 3340 2977595 - 2977546 - T 100 -17.6 -5.31545 | opp_overlap 2977543 2977562 AACAAGAGCAAAAAA GAGTGGAGAAAAAACATTCAAA GTCACT TTTGAATATTTCTTCTCCACCC TACCTCTTCTTCACT Cphy_2426 2977888 - 2977634 - | hypothetical protein Cphy_2427 2978220 - 2977852 - | hypothetical protein Cphy_2428 2979665 - 2978265 - | Ig domain-containing protein TERM 3341 2980032 - 2980088 + r 100 -23.7 -3.47941 | gap 1, opp_overlap 2980032 2980041, overlap 2980041 GTACCTATGTTGAAA GAGACAGAAGTGATAACAAA-AAAAC TTTTAT GTTTTATTTGTTATCACTTCTGTCTC TTATAATAGTTAGTA TERM 3342 2980088 - 2980032 - R 100 -23.7 -3.57792 | gap 1, opp_overlap 2980032 2980041, overlap 2980041 GTACCTATGTTGAAA GAGACAGAAGTGATAACAAA-AAAAC TTTTAT GTTTTATTTGTTATCACTTCTGTCTC TTATAATAGTTAGTA TERM 3343 2980079 - 2980041 - R 86 -10 -3.73008 | gap 1, opp_overlap 2980041 2980032, overlap 2980032 TTGAAAGAGACAGAA GTGATAACAAA-AAAAC TTTTAT GTTTTATTTGTTATCAC TTCTGTCTCTTATAA TERM 3344 2980041 - 2980079 + r 86 -10 -3.71149 | gap 1, opp_overlap 2980032 2980041, overlap 2980032 TTGAAAGAGACAGAA GTGATAACAAA-AAAAC TTTTAT GTTTTATTTGTTATCAC TTCTGTCTCTTATAA Cphy_2429 2982114 - 2980255 - | ABC transporter related Cphy_2430 2983838 - 2982111 - | ABC transporter related TERM 3345 2983252 - 2983278 + g 91 -6.6 -5.41143 | CCTAAAAGATTTTCC CTTGTAATCTGT AAT ACAGAATCCAAG TTTTTTTGAACCCTC Cphy_2431 2984205 - 2985104 + | LysR family transcriptional regulator TERM 3346 2985272 - 2985288 + T 70 -4.5 -4.77925 | TGTATTTTTTATATT GTTTATT ATT AATAAGC TTTTTAAACTTTTTT Cphy_2432 2986585 - 2985305 - | hypothetical protein TERM 3347 2987078 - 2987039 - R 100 -12.3 -4.05788 | CTTTCGTAAATTAAA TGCTATGCTCCCCTTGA TAAATC TCATGAAGAGCATAGCA AAAATATCAATACTA Cphy_2433 2988574 - 2987162 - | oxaloacetate decarboxylase TERM 3348 2988537 - 2988553 + g 100 -7.3 -5.65513 | overlap 2988530 2988538 TCACGTAATATCGTT TCGGTAA TCT TTACCGG TTTTTTTACTTGCTC TERM 3349 2988538 - 2988552 + g 80 -8.6 -3.97681 | overlap 2988530 2988537 CACGTAATATCGTTT CGGTAA TCT TTACCG GTTTTTTTACTTGCT Cphy_2434 2989783 - 2988701 - | sodium ion-translocating decarboxylase, beta subunit Cphy_2435 2990289 - 2989885 - | biotin/lipoyl attachment domain-containing protein Cphy_2436 2990644 - 2990309 - | sodium pump decarboxylase gamma subunit Cphy_2437 2992094 - 2990661 - | propionyl-CoA carboxylase TERM 3350 2991674 - 2991648 - G 70 -8.6 -3.00215 | opp_overlap 2991672, overlap 2991637 AAAGTCGCATAGAGA TGCGGATATGGC ACT GCCTCCTCCGCA ATTACCAAAAATTGC TERM 3351 2991961 - 2991971 + g 81 -5.4 -5.08088 | GTGATAACACCATCA GAAG GTA CTTC TTTTTGTTGCAGGTT TERM 3352 2992328 - 2992380 + r 84 -10.2 -3.4376 | gap 1, opp_overlap 2992331, overlap 2992331 2992333 AAAAGAAACAATAAA AAACAGAGATAGTTAGGAGTCTATA TTAA TA-ATACTCCTAACTATCTCTGTAC TTATCGTCAGTCTAT TERM 3353 2992377 - 2992331 - R 100 -18.5 -5.74288 | gap 1, opp_overlap 2992328 2992331 2992333 AGAAACAATAAAAAA CAGAGATAGTTAGGAGT-CTAT ATTA ATAATACTCCTAACTATCTCTG TACTTATCGTCAGTC TERM 3354 2992331 - 2992377 + r 100 -16.3 -2.86747 | gap 1, opp_overlap 2992331, overlap 2992328 2992333 AGAAACAATAAAAAA CAGAGATAGTTAGGAGTCTATA TTAA TA-ATACTCCTAACTATCTCTG TACTTATCGTCAGTC TERM 3355 2992333 - 2992375 + r 100 -13.1 -2.98072 | gap 1, opp_overlap 2992331, overlap 2992331 2992328 AAACAATAAAAAACA GAGATAGTTAGGAGTCTATA TTAA TA-ATACTCCTAACTATCTC TGTACTTATCGTCAG Cphy_2438 2993100 - 2992459 - | regulatory protein RecX TERM 3356 2992983 - 2992995 + g 76 -7.7 -4.12857 | opp_overlap 2992979 2992983, overlap 2992984 GTATTTTTAAACCAA CTTCC AAA GGAAG TTCTTTGTAATCCTT Cphy_2439 2994147 - 2993104 - | recA protein TERM 3357 2994204 - 2994214 + H 74 -4 -5.28176 | CTGTAATCATCTTAT CTTA TTC TAAG TTTTTTGTCAATACC Cphy_2440 2994740 - 2994916 + | BFD/(2Fe-2S)-binding domain-containing protein TERM 3358 2995007 - 2994950 - T 100 -15 -2.66272 | opp_overlap 2994951 CTTGACGCAAAGCCA CGGGGCTTTTCATAGAAGTGATTGAG TAATCT CTCTTTCTCTTCCATGAAAAGCCCCT TATTATTACATATAG TERM 3359 2994951 - 2995006 + T 100 -16.3 -3.98378 | opp_overlap 2994950 TTGACGCAAAGCCAC GGGGCTTTTCATAGAAGTGATTGAG TAATCT CTCTTTCTCTTCCATGAAAAGCCCC TTATTATTACATATA Cphy_2441 2996233 - 2995013 - | threonine dehydratase TERM 3360 2995047 - 2995057 + g 86 -5.4 -5.36441 | GGTTGTATTAGTTTT GGAT TAT ATCC TTTTTTCTCTAGAGC TERM 3361 2996390 - 2996369 - R 100 -14.5 -4.09685 | opp_overlap 2996369, overlap 2996343 TCGGATTTGTCAAAA CGACAACCC TTTC GGGTTGTCG TTTACTTCTATACTC TERM 3362 2996369 - 2996390 + r 100 -14.5 -4.05245 | opp_overlap 2996343 2996369 TCGGATTTGTCAAAA CGACAACCC TTTC GGGTTGTCG TTTACTTCTATACTC Cphy_2442 2997344 - 2996412 - | signal recognition particle-docking protein FtsY Cphy_2443 3001018 - 2997461 - | chromosome segregation protein SMC TERM 3363 3001095 - 3001114 + r 100 -9.4 -4.74518 | GCACAAACTCCCTAA GTGAAAGA TTTA TCTTTCAC TTTATTTTAGTAATT Cphy_2444 3001823 - 3001116 - | ribonuclease III TERM 3364 3001939 - 3001988 + H 85 -8.2 -4.4891 | gap 1, opp_overlap 3001947, overlap 3001946 AGATTAAAGGCTCTA TAATAAATGTTGGGGTATGTGAA ATTAA TTCGC-TACTCCAACGTTTTTTA TTTTATAATAATAAA TERM 3365 3001946 - 3001981 + H 100 -6.3 -5.86976 | gap 1, opp_overlap 3001947, overlap 3001939 AGGCTCTATAATAAA TGTTGGGGTATGTGAA ATTAA TTCGC-TACTCCAACG TTTTTTATTTTATAA Cphy_2445 3002052 - 3003227 + | transposase IS204/IS1001/IS1096/IS1165 family protein TERM 3366 3003408 - 3003375 - T 100 -14.7 -5.22312 | gap 1, opp_overlap 3003373 3003368 AGCCAGATTAAAAAA GGGTGTTGCCATTTGC ACC GCTAA-GGCAACACCC GATCATATTATTCCA Cphy_2446 3003646 - 3003416 - | acyl carrier protein Cphy_2447 3004705 - 3003674 - | fatty acid/phospholipid synthesis protein PlsX TERM 3367 3004898 - 3004946 + r 85 -4.8 -5.70761 | gap 1, opp_overlap 3004906, overlap 3004903 CACATCCCTCAGAGA GTATAAAAGCTGTTATTCCGTAA TGAA TTACCGAATAACAGCTGATG-AC TTTTTATTTTATTTT TERM 3368 3004939 - 3004906 - R 100 -14.1 -4.53163 | opp_overlap 3004903 3004898 TCAGAGAGTATAAAA GCTGTTATTCCGTAA TGAA TTACCGAATAACAGC TGATGACTTTTTATT Cphy_2448 3005778 - 3005002 - | MCP methyltransferase, CheR-type TERM 3369 3005102 - 3005118 + g 71 -4.5 -4.7497 | AATATCCCATTTGGT TTTAATG CTT CATTGAA TTTTTGATAAATCAC TERM 3370 3005532 - 3005511 - G 83 -11.7 -3.02829 | opp_overlap 3005516, overlap 3005513 3005516 GAGACTTTTGCAATA GAGAAGGAA GAAT TTCCTTCTC CAGCAATTGCCACTG TERM 3371 3005646 - 3005664 + g 82 -6.8 -4.89477 | CACTGACATACTCTG CATAAGTG GTA TACTTATG TTTTGTTATTAAAGA TERM 3372 3005890 - 3005855 - R 93 -10.1 -4.64334 | opp_overlap 3005859, overlap 3005859 AATTCCGGAATAAAA CAAATTTCTTTAGAA ATTAGA TTCTAAAGAAATTTA TTTAATCCATATCCT TERM 3373 3005886 - 3005859 - R 93 -8.7 -4.87892 | opp_overlap 3005859, overlap 3005855 CCGGAATAAAACAAA TTTCTTTAGAA ATTAGA TTCTAAAGAAA TTTATTTAATCCATA TERM 3374 3005859 - 3005886 + r 88 -8.7 -4.50627 | opp_overlap 3005855 3005859 CCGGAATAAAACAAA TTTCTTTAGAA ATTAGA TTCTAAAGAAA TTTATTTAATCCATA Cphy_2449 3007838 - 3005907 - | hydroxymethylbutenyl pyrophosphate reductase TERM 3375 3007431 - 3007446 + g 78 -9 -3.67344 | opp_overlap 3007431 3007430 ACACCAACCAATAAT TCCGGA AACT TCCGGA TGTTCTTTATCTCCT TERM 3376 3007960 - 3007985 + r 88 -11.3 -3.31726 | overlap 3007959 GCATGCACAACTTCT GTGTGAAAGAA CTTG TTCTTTCACGC TATTATCTGAGAAAA Cphy_2450 3008663 - 3007980 - | cytidylate kinase TERM 3377 3008022 - 3008009 - G 73 -2.3 -5.32599 | overlap 3008013 GAGAAAATAGAAAAA GGATG TGAT CAGCC ACCTCTGTAATTGTC Cphy_2451 3010016 - 3008676 - | hypothetical protein TERM 3378 3009035 - 3009045 + g 70 -2.6 -5.1244 | GTTCTAAGGAATTTT TAAA TTG TTTA TTTTTATATTCCTCA TERM 3379 3009298 - 3009314 + g 91 -9.5 -4.52589 | opp_overlap 3009310, overlap 3009298 TGTTCTTGTTCTGAA GTTTCTG GAA CAGAAAC TTTTGTCTCAGAAAC TERM 3380 3009298 - 3009329 + g 79 -7.4 -4.4078 | opp_overlap 3009310, overlap 3009298 TGTTCTTGTTCTGAA GTTTCTGGAACAGA AACT TTTGTCTCAGAAAC TTTTGCTTCCCCAGC TERM 3381 3010091 - 3010058 - R 74 -8.5 -3.24924 | gap 1, opp_overlap 3010056, overlap 3010056 3010081 GTCGCAGGTACAATA TTTACATGTAAATTAC AAA GCAATTTAC-TGTAAA AAACTTTATTTTTTC Cphy_2452 3010793 - 3010239 - | hypothetical protein Cphy_2453 3012142 - 3010976 - | CinA domain-containing protein TERM 3382 3012214 - 3012249 + r 74 -2 -5.55769 | opp_overlap 3012214 3012216, overlap 3012214 3012216 CATTTTATATAAAAA G-ATGGCCTGACTTCT TAATTT ATAAGTC-GGCCATAC TTTTTTATTATAAAA Cphy_2454 3012948 - 3012406 - | CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase Cphy_2455 3014287 - 3012965 - | MiaB-like tRNA modifying enzyme YliG Cphy_2456 3015490 - 3014642 - | methylenetetrahydrofolate dehydrogenase (NADP(+)) Cphy_2457 3017149 - 3015596 - | phospholipase D/transphosphatidylase TERM 3383 3017393 - 3017345 - R 79 -5.1 -5.24129 | gap 3, opp_overlap 3017345 TTTGTGGACAAAAAA TCAGAGTATA-CTCT-TG-ATTTG TCCC CAAATACATAGAACTATACTCTGA TTTATATTATTTGAT Cphy_2458 3019729 - 3017438 - | hypothetical protein TERM 3384 3019326 - 3019351 + g 89 -6.2 -5.40072 | overlap 3019328 TGGATGACTGCCTGA TGTGGTGGAA CATACA TTCCGCCATA TTTTTTTGCACAGGA TERM 3385 3019328 - 3019349 + g 73 -6.6 -4.34482 | overlap 3019326 GATGACTGCCTGATG TGGTGGAA CATACA TTCCGCCA TATTTTTTTGCACAG TERM 3386 3019841 - 3019820 - R 91 -11.7 -3.56251 | opp_overlap 3019819 3019818 3019822 TAAATATTTAGATAA GAGGAATCA AAAA TGATTCCTC CATTTAATGCCATTA Cphy_2459 3020405 - 3019854 - | hypothetical protein TERM 3387 3020330 - 3020343 + g 70 -5.3 -4.47786 | TCTTCTTTTTTTCCT TCAAG GTCT CTTGA TTTATTTCCCTAGTT Cphy_2460 3021967 - 3020510 - | multi anti extrusion protein MatE TERM 3388 3021191 - 3021175 - G 83 -9.5 -3.84808 | overlap 3021185 TCGAATTCACAATAA CTTTTCC AAA GGAAAAG GCGGCCTTTTCCACC TERM 3389 3021203 - 3021185 - G 87 -11.8 -3.56366 | overlap 3021175 3021191 AATAACTTTTCCAAA GGAAAAGG CGG CCTTTTCC ACCATTACAGGTCCT TERM 3390 3022035 - 3022050 + H 72 -2.6 -5.44638 | gap 1, overlap 3022037 GGATAGTACAATTTG TCTAAGG ATA CCTT-GA TTTTCTTTTTATTAT Cphy_2461 3022317 - 3023150 + | AraC family transcriptional regulator TERM 3391 3023214 - 3023157 - T 85 -11.1 -3.32966 | gap 1, opp_overlap 3023162, overlap 3023162 ATAGTGTAGATAATA CAAAAGTCTATCTTAGTTATTCTATCAT AAG AT-AGAGAAAAACTAAGATAGACTTTTT ATATAAGCAATAATT TERM 3392 3023162 - 3023209 + T 100 -11 -4.96848 | gap 1, opp_overlap 3023157 3023162 GTAGATAATACAAAA GTCTATCTTAGTTATTCTATCAT AAG AT-AGAGAAAAACTAAGATAGAC TTTTTATATAAGCAA TERM 3393 3023209 - 3023162 - T 100 -11 -4.76963 | gap 1, opp_overlap 3023162, overlap 3023157 GTAGATAATACAAAA GTCTATCTTAGTTATTCTATCAT AAG AT-AGAGAAAAACTAAGATAGAC TTTTTATATAAGCAA Cphy_2462 3023648 - 3023301 - | hypothetical protein Cphy_2463 3024975 - 3023803 - | iron-containing alcohol dehydrogenase TERM 3394 3024624 - 3024612 - G 72 -7.7 -3.68988 | opp_overlap 3024611 3024612 TTCCATCTAATACAA GATCC CAT GGATC ATTATCATAATAATG TERM 3395 3025092 - 3025131 + r 100 -19.7 -2.85874 | opp_overlap 3025095 3025098, overlap 3025095 3025098 ACTTTTCTTTGCCAT GAATAAGGGTATCTGTA CTTTAA TACAGATACCCTTATTC TAATTGATATATTTA TERM 3396 3025095 - 3025128 + r 100 -15.6 -3.55889 | opp_overlap 3025095 3025098, overlap 3025092 3025098 TTTCTTTGCCATGAA TAAGGGTATCTGTA CTTTAA TACAGATACCCTTA TTCTAATTGATATAT TERM 3397 3025128 - 3025095 - R 100 -16.3 -3.14132 | opp_overlap 3025095 3025092 3025098, overlap 3025098 TTTCTTTGCCATGAA TAAGGGTATCTGTAC TTTA ATACAGATACCCTTA TTCTAATTGATATAT TERM 3398 3025125 - 3025098 - R 100 -13.6 -3.71848 | opp_overlap 3025095 3025092 3025098, overlap 3025095 CTTTGCCATGAATAA GGGTATCTGTAC TTTA ATACAGATACCC TTATTCTAATTGATA TERM 3399 3025098 - 3025125 + r 100 -12.9 -3.90241 | opp_overlap 3025098 3025095, overlap 3025095 3025092 CTTTGCCATGAATAA GGGTATCTGTA CTTTAA TACAGATACCC TTATTCTAATTGATA Cphy_2464 3026121 - 3025234 - | binding-protein-dependent transport systems inner membrane component Cphy_2465 3027100 - 3026126 - | binding-protein-dependent transport systems inner membrane component TERM 3400 3027250 - 3027217 - R 100 -16.9 -2.65442 | overlap 3027222 3027226 ATACTATCCATATTA GTACAGCAAGGCGAT TCAA ACCACCTTGCTGTAC CGAAATAAATGTTTT TERM 3401 3027245 - 3027222 - R 75 -9.6 -2.84812 | overlap 3027217 3027226 ATCCATATTAGTACA GCAAGGCGAT TCAA ACCACCTTGC TGTACCGAAATAAAT Cphy_2466 3028755 - 3027334 - | extracellular solute-binding protein TERM 3402 3028725 - 3028737 + g 76 -3.4 -5.38348 | opp_overlap 3028720, overlap 3028720 TGGTCAAAACCATGA GCAT AGCTA ATGC TTTTTTCATCTTTTT Cphy_2467 3029881 - 3028826 - | LacI family transcription regulator TERM 3403 3030207 - 3030236 + r 73 -7.9 -3.73107 | opp_overlap 3030207 3030209 3030211 CATAAAACCGAATCA GAGACGTGACGAA ACGT TTCGCTATGTCTC TTTAAAATTTGATGC TERM 3404 3030485 - 3030519 + r 84 -10.1 -3.456 | gap 1, opp_overlap 3030489 3030490, overlap 3030488 3030490 TCAGTTCGTATGATA TAAATCTGGCGGGTAG AATA CTACCCGCCAG-TCTG TTAATTCCTATCTTA TERM 3405 3030488 - 3030517 + r 89 -12.1 -3.28889 | opp_overlap 3030489 3030490, overlap 3030485 3030490 GTTCGTATGATATAA ATCTGGCGGGTAG AATA CTACCCGCCAGTC TGTTAATTCCTATCT TERM 3406 3030516 - 3030489 - R 100 -15.6 -4.08706 | opp_overlap 3030488 3030485 3030490, overlap 3030490 TTCGTATGATATAAA TCTGGCGGGTAG AATA CTACCCGCCAGT CTGTTAATTCCTATC TERM 3407 3030490 - 3030515 + r 100 -19.1 -3.20226 | opp_overlap 3030490 3030489, overlap 3030488 3030485 TCGTATGATATAAAT CTGGCGGGTAG AATA CTACCCGCCAG TCTGTTAATTCCTAT TERM 3408 3030515 - 3030490 - R 100 -19.1 -3.04902 | opp_overlap 3030488 3030485 3030490, overlap 3030489 TCGTATGATATAAAT CTGGCGGGTAG AATA CTACCCGCCAG TCTGTTAATTCCTAT Cphy_2468 3031322 - 3030540 - | sporulation sigma factor SigG TERM 3409 3031384 - 3031330 - R 85 -8.9 -4.0127 | gap 1, opp_overlap 3031330 3031343 3031344 3031346 AGAGCCATAATGAAA CCTCCCAGATTAACCATTTTATTCTG AAGT CATAATAAAATGATTTACC-GGAAGG TCTCTTTTTATACGA Cphy_2469 3032175 - 3031435 - | sporulation sigma factor SigE Cphy_2470 3033074 - 3032193 - | peptidase U4 sporulation factor SpoIIGA TERM 3410 3032493 - 3032505 + g 70 -9.1 -3.0782 | GACTATTACTGGTTT TCCGG AAA CCGGA TCTCTTAACGAGTTC TERM 3411 3033282 - 3033244 - R 85 -6.9 -5.12707 | opp_overlap 3033244 TTAAAGCGCAAAAAA GCCTTTCAAGCGA ACCTGGTATTTTG TCGCTTAAAAGGC ATTTTTTTAAATGTA Cphy_2471 3034548 - 3033316 - | cell division protein FtsZ TERM 3412 3034604 - 3034590 - R 71 -8.6 -2.79183 | TCTATTTTCATCATA GTGACT CCT AGTCAC GTACTGCAGATTGAT Cphy_2472 3035599 - 3034850 - | hypothetical protein TERM 3413 3035668 - 3035706 + r 70 -8.2 -3.06261 | opp_overlap 3035671, overlap 3035671 GCATTGTGAAGTTTA GAATTTCTCAGGCGGC ATCTTTC GTCGCCCTAGAAATTC TCTTCACACTTAAAA TERM 3414 3035790 - 3035828 + r 82 -7.5 -4.6902 | opp_overlap 3035786 3035790 3035794 CTGCTGTGAAACTTA GAAATTCTTAGTCAGCG TATTT TGCTGGCTTAGAATTAC TTTTTACACTTGTAA Cphy_2473 3037088 - 3035832 - | UDP-N-acetylglucosamine 1-carboxyvinyltransferase Cphy_2474 3038310 - 3037180 - | cell cycle protein Cphy_2475 3039709 - 3038345 - | UDP-N-acetylmuramoylalanine--D-glutamate ligase TERM 3415 3039804 - 3039826 + r 77 -9.3 -3.25312 | overlap 3039806 GTTTACAATTCTATA TGTGAAAGA TTCAT TCTTTCACA TTAATGCCTCTTTTT Cphy_2476 3041820 - 3039871 - | peptidoglycan glycosyltransferase TERM 3416 3040259 - 3040269 + g 73 -5.4 -4.59853 | opp_overlap 3040249, overlap 3040251 ATATACTTTCCAGAT CTTC TTG GAAG TTTTTCAGACGTTGC TERM 3417 3041770 - 3041788 + g 73 -3.2 -5.16572 | overlap 3041772 GATAAAAAACACAGC GATAACAA TAA TTGTTATA TTTTTTCGGTTAAAT Cphy_2477 3043879 - 3041924 - | peptidoglycan glycosyltransferase Cphy_2478 3044738 - 3044190 - | septum formation initiator TERM 3418 3044775 - 3044791 + r 84 -10.9 -3.01712 | TTTTTCCTCCATGAT TGCGCAT GCT ATGCGCA TATTCGAAGAGAAAG Cphy_2479 3045808 - 3044855 - | S-adenosyl-methyltransferase MraW Cphy_2480 3046284 - 3045859 - | MraZ protein TERM 3419 3046451 - 3046407 - R 100 -13.8 -5.15969 | opp_overlap 3046411, overlap 3046411 CCTTAATTCAAAAAA TAAAGTGGCGGAAACACC TTATTTTCC AGTGTTTCCGCCACTTTT TGACCTATACTATAT TERM 3420 3046411 - 3046447 + r 100 -13.9 -4.65168 | opp_overlap 3046411 3046407 AATTCAAAAAATAAA GTGGCGGAAACAC CTTATTTTCCA GTGTTTCCGCCAC TTTTTGACCTATACT TERM 3421 3046447 - 3046411 - R 100 -14.6 -5.08015 | opp_overlap 3046411, overlap 3046407 AATTCAAAAAATAAA GTGGCGGAAACACC TTATTTTCC AGTGTTTCCGCCAC TTTTTGACCTATACT TERM 3422 3046469 - 3046493 + r 83 -5.8 -5.14477 | ACCTATACTATATGT TGATAGAATC CTAAC GTTTCTATCA TTTTTTAACTATATC Cphy_2481 3047546 - 3046629 - | prolipoprotein diacylglyceryl transferase Cphy_2482 3048662 - 3047565 - | GTP-binding protein YchF Cphy_2483 3049421 - 3048771 - | thiamine pyrophosphokinase Cphy_2484 3050261 - 3049599 - | ribulose-phosphate 3-epimerase TERM 3423 3050281 - 3050296 + r 78 -9 -3.55664 | TTTCCTCTTTTCTGT CACGCA TTTA TGCGTG TGTTATTCTGTGTAT TERM 3424 3050327 - 3050366 + r 76 -9.6 -3.02109 | opp_overlap 3050321 3050328 3050337, overlap 3050331 3050337 CTAATAAAACCAGAA AGAATGAAAATGAAATTC CGAT GGATTTCATTTTTATTCA TCTGTGTGAAGTTTT TERM 3425 3050365 - 3050328 - R 90 -9.5 -4.2649 | gap 1, opp_overlap 3050327 3050331 3050337, overlap 3050321 3050337 TAATAAAACCAGAAA GAATGAAAATGAAATTCC GAT GGA-TTTCATTTTTATTC ATCTGTGTGAAGTTT TERM 3426 3050331 - 3050362 + r 77 -9 -3.35197 | opp_overlap 3050328 3050321 3050337, overlap 3050327 3050337 TAAAACCAGAAAGAA TGAAAATGAAATTC CGAT GGATTTCATTTTTA TTCATCTGTGTGAAG TERM 3427 3050337 - 3050356 + r 83 -5.8 -5.17744 | opp_overlap 3050328 3050321 3050337, overlap 3050331 3050327 CAGAAAGAATGAAAA TGAAATTC CGAT GGATTTCA TTTTTATTCATCTGT TERM 3428 3050466 - 3050485 + r 83 -5.8 -5.29445 | opp_overlap 3050466 CCGGAAGAATAAAAA TGAAATTC CAAT GGATTTCA TTTTTATTCTTCCAG TERM 3429 3050485 - 3050466 - R 77 -4.4 -5.29445 | gap 1, opp_overlap 3050466 CCGGAAGAATAAAAA TGAAATTCC AAT GGA-TTTCA TTTTTATTCTTCCAG TERM 3430 3050513 - 3050551 + r 84 -11.1 -3.06261 | opp_overlap 3050516, overlap 3050516 CAGTGTGAAGTTTTA GAATTTCTTAGGCGGCG TCTTT TGGCGCCTTAGAAATTC TCTTCACACTTCACA Cphy_2485 3051454 - 3050579 - | ribosome small subunit-dependent GTPase A TERM 3431 3050857 - 3050876 + g 70 -2.8 -5.1471 | overlap 3050858 3050859 TTAACTCAGAGTGTC TTGTGGTA TGCT TACCACGC TTTATTTTTTCTGAT TERM 3432 3051347 - 3051368 + g 76 -10.3 -2.59332 | overlap 3051346 3051345 3051349 ACCGACGAGAGGTTT TATTTTCCG GTTT CGGAAAATA CCTTTTGCTTTACAT Cphy_2486 3053694 - 3051547 - | serine/threonine protein kinase with PASTA sensor(s) TERM 3433 3052373 - 3052386 + g 70 -5.3 -4.47707 | ACTAAGCCTTCTTCA TACTC ATCT GAGTA TTCTTTTTCATCCGC Cphy_2487 3054539 - 3053814 - | protein serine/threonine phosphatase Cphy_2488 3055611 - 3054541 - | radical SAM protein Cphy_2489 3057102 - 3055741 - | sun protein TERM 3434 3056957 - 3056992 + g 90 -12.7 -3.19449 | opp_overlap 3056955 3056956 3056965, overlap 3056958 3056961 3056988 TTTTGTTCTAAAACC CCAAGGCAGAGCCTT GATATA AAGGCTCTGTCTTGC TTACTCAAGTCTTTG TERM 3435 3056958 - 3056991 + g 100 -16.2 -2.51187 | opp_overlap 3056955 3056956 3056965, overlap 3056957 3056961 3056988 TTTGTTCTAAAACCC CAAGGCAGAGCCTT GATATA AAGGCTCTGTCTTG CTTACTCAAGTCTTT TERM 3436 3056961 - 3056988 + g 89 -12.1 -3.40371 | opp_overlap 3056955 3056956 3056965, overlap 3056958 3056957 GTTCTAAAACCCCAA GGCAGAGCCTT GATATA AAGGCTCTGTC TTGCTTACTCAAGTC Cphy_2490 3057849 - 3057124 - | peptidase membrane zinc metallopeptidase putative TERM 3437 3057823 - 3057811 - G 73 -3.3 -5.08255 | overlap 3057812 AGGGTCAAAATAAAA TCCGT AAA ACGGT GATGCATAATATAAA TERM 3438 3057929 - 3057904 - R 82 -9.9 -3.30453 | gap 1 GACAATGCATATCAA GTTTGTGT-TGC AAC GCAGACACAAAC AATACATGAACCAAT Cphy_2491 3059149 - 3058190 - | methionyl-tRNA formyltransferase Cphy_2492 3059652 - 3059161 - | peptide deformylase Cphy_2493 3062047 - 3059669 - | primosomal protein N' TERM 3439 3061835 - 3061846 + g 71 -4.4 -4.87592 | CCCTTTATCTTTAAT TCCA AGTA TGGA TTTTATTCTCTCTGG Cphy_2494 3063602 - 3062079 - | UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alanyl-D-alanyl ligase Cphy_2495 3065119 - 3063638 - | UDP-N-acetylmuramyl-tripeptide synthetase TERM 3440 3065252 - 3065273 + r 75 -8.1 -3.67974 | overlap 3065250 3065247 GCACGAACTTGATGG GTGAAAGGT TAAA ATCTTTCAC TGTCTTTTTATTAAT TERM 3441 3065479 - 3065452 - R 100 -15 -4.0162 | opp_overlap 3065450 3065449 TTTTTACACGAGAAA TTCCCACGGTCT ATAC AAACCGTGGGAA AAATATTACTTATAA Cphy_2496 3066925 - 3065489 - | glycogen/starch synthase, ADP-glucose type TERM 3442 3065819 - 3065807 - G 88 -7.7 -4.7373 | TGAGGGCATTAAAAA CGCAT CAC ATGCG GCATAAATTTTATGG TERM 3443 3066581 - 3066598 + g 74 -4.9 -4.74453 | ACAGGTTAAAACTGC TTTGCTT AAAA AAGCGAA TTTTTCAATGTCTTC Cphy_2497 3067844 - 3067044 - | sporulation transcriptional activator Spo0A Cphy_2498 3069739 - 3068402 - | stage IV sporulation protein B TERM 3444 3069867 - 3069845 - R 80 -7.1 -4.73682 | opp_overlap 3069845 CGTCAGAATACAAAA GGATATACC GTATT AGTATATCC TTAATTCTTAATTTC Cphy_2499 3071660 - 3069975 - | DNA repair protein RecN TERM 3445 3070127 - 3070137 + g 79 -3.2 -5.48825 | TTGTATTTGTTGAAA TGCC ATC GGTA TTTTTTTCAATAATA Cphy_2500 3075851 - 3071949 - | Ig domain-containing protein TERM 3446 3076056 - 3076039 - H 70 -4.2 -5.11389 | opp_overlap 3076039 ACAATAGAAACAAAA TCTGTA TATTAT TACAGA TATCTATTATAAAAG Cphy_2501 3076377 - 3076847 + | hypothetical protein Cphy_2502 3076928 - 3077176 + | hypothetical protein TERM 3447 3077555 - 3077532 - g 73 -3.2 -5.13473 | ATGACACCTAAAAAA TTCATCAACA ACGA TAGTGATGAA AATGAAGGAATTTGG Cphy_2503 3077391 - 3077969 + | chloramphenicol phosphotransferase family protein TERM 3448 3078084 - 3078060 - T 82 -7.9 -4.58663 | ATCATGCGCTAAAAA GGATTACGGCA TTT TACCACAATCC ATAATAAGATAGTCA Cphy_2504 3078674 - 3078108 - | hypothetical protein Cphy_2505 3078985 - 3078788 - | hypothetical protein Cphy_2506 3080222 - 3079473 - | hypothetical protein Cphy_2507 3081439 - 3080711 - | hypothetical protein TERM 3449 3081359 - 3081369 + g 72 -4 -5.01811 | AATCTCACGGCCAAG TCTT GTG AAGA TTTTTCCTTTCGTAG TERM 3450 3081495 - 3081509 + r 90 -10 -4.07133 | opp_overlap 3081487 3081495 AACACCACAACTACA GCTGTC AAA GACAGC TTCTTTATAGCAATA TERM 3451 3081509 - 3081495 - R 81 -10 -2.99188 | opp_overlap 3081495, overlap 3081487 AACACCACAACTACA GCTGTC AAA GACAGC TTCTTTATAGCAATA Cphy_2508 3082081 - 3081623 - | arginine repressor, ArgR Cphy_2509 3082960 - 3082103 - | ATP-NAD/AcoX kinase TERM 3452 3082905 - 3082889 - G 71 -5.1 -4.56775 | ATTGGCTTCTAAAAA CTCTAAC ATC GTTTGAG TAATCGTTAAATTTT Cphy_2510 3083887 - 3083087 - | hemolysin A TERM 3453 3083934 - 3083957 + r 74 -9 -3.06133 | gap 1, overlap 3083937 GATCGGCTAATGGCT CAAGTTTG-GC GCA GCACAAACTTG TTGAGTGAAAGATTA TERM 3454 3083960 - 3083986 + r 100 -15.4 -3.75295 | opp_overlap 3083968, overlap 3083968 CAGCACAAACTTGTT GAGTGAAAGATT AAA AATCTTTCACTC TTTACCTCATTTCTG Cphy_2511 3085870 - 3083993 - | deoxyxylulose-5-phosphate synthase Cphy_2512 3086897 - 3085890 - | polyprenyl synthetase Cphy_2513 3087137 - 3086922 - | exonuclease VII small subunit Cphy_2514 3088357 - 3087152 - | exodeoxyribonuclease VII, large subunit TERM 3455 3087587 - 3087606 + g 71 -8.6 -3.2819 | gap 1, overlap 3087604 CTCAGGTACTGCAAG CTCCG-CTG CTG CAGACGGAG TTGGTGCTCTTAAAT Cphy_2515 3088823 - 3088425 - | NusB antitermination factor TERM 3456 3088925 - 3088874 - R 74 -6.6 -4.21439 | opp_overlap 3088888 3088894 TAATCCTAAGACAAA CGTTGAGGCTGCCACTTACACATA AGGT TATGTATTCATGACACCCTCACCG GTAAAATTCTTCCTT Cphy_2516 3089367 - 3088975 - | hypothetical protein TERM 3457 3089389 - 3089401 + r 74 -5.5 -4.90519 | overlap 3089390 ACCTCCTATATCTCA TGCGT TTA ACGCG TTCTTTTTTTACTTT TERM 3458 3089624 - 3089585 - R 83 -6.6 -4.7416 | opp_overlap 3089586, overlap 3089586 3089616 3089621 TCAAAATTTTAAAAA GGCCTATTACCTTATC CATAACAC GATAAGATAACAGGCT TAGTTAAAACCTATT TERM 3459 3089623 - 3089586 - R 84 -10.1 -3.43411 | opp_overlap 3089586, overlap 3089585 3089616 3089621 CAAAATTTTAAAAAG GCCTATTACCTTATC CATAACAC GATAAGATAACAGGC TTAGTTAAAACCTAT Cphy_2517 3090421 - 3089660 - | hypothetical protein Cphy_2518 3091204 - 3090485 - | hypothetical protein Cphy_2519 3091859 - 3091188 - | hypothetical protein Cphy_2520 3093022 - 3091880 - | sporulation stage III, protein AE Cphy_2521 3093460 - 3093041 - | stage III sporulation protein AD TERM 3460 3093088 - 3093076 - G 72 -7.7 -3.77553 | CAATAGTATCAAGAA GTGCT AAT AGCAC TGGCATACTGATTGC TERM 3461 3093192 - 3093210 + g 71 -4.6 -4.74801 | opp_overlap 3093193, overlap 3093193 GATGCAAATTCTGAA ATATAGGT AAT ACCTATAA TTTTTAATAAAATTG TERM 3462 3093193 - 3093209 + g 70 -8.1 -3.44158 | opp_overlap 3093193, overlap 3093192 ATGCAAATTCTGAAA TATAGGT AAT ACCTATA ATTTTTAATAAAATT TERM 3463 3093209 - 3093193 - G 72 -8.1 -3.64236 | opp_overlap 3093193 3093192 ATGCAAATTCTGAAA TATAGGT AAT ACCTATA ATTTTTAATAAAATT Cphy_2522 3093701 - 3093549 - | stage III sporulation protein AC Cphy_2523 3094287 - 3093757 - | hypothetical protein Cphy_2524 3095276 - 3094308 - | stage III sporulation protein AA TERM 3464 3095857 - 3095812 - g 87 -2 -6.11019 | gap 3, opp_overlap 3095814, overlap 3095813 3095827 AAAAAGCAAAAAAAA TCGGTGCAGTTAACACCATTGTC AAT GACAACGG-GA-AACT-CACCGG ATATAATACAGACTA TERM 3465 3095845 - 3095827 - g 74 -9.6 -3.08679 | opp_overlap 3095814, overlap 3095813 3095812 TCGGTGCAGTTAACA CCATTGTC AAT GACAACGG GAAACTCACCGGATA TERM 3466 3096073 - 3096062 - g 76 -4.4 -5.18643 | opp_overlap 3096067 GGAAGCAAAAGAAAA GCAT TTTG ATGC ATCAATTATAATCAA Cphy_2525 3095595 - 3096365 + | shikimate dehydrogenase substrate binding subunit TERM 3467 3096432 - 3096482 + F 100 -15 -4.4727 | opp_overlap 3096432 TACAATCTTTAAAAA GTAAGGTGTTGATTGGTGATGTAT AGA AAACTTGATCAATCAACACCTTAC TTTTCTAACTCTTGA TERM 3468 3096482 - 3096432 - f 100 -12.8 -4.63542 | opp_overlap 3096432 TACAATCTTTAAAAA GTAAGGTGTTGATTGGTGATGTAT AGA AAACTTGATCAATCAACACCTTAC TTTTCTAACTCTTGA Cphy_2526 3096736 - 3097287 + | PadR-like family transcriptional regulator Cphy_2527 3097284 - 3097676 + | hypothetical protein TERM 3469 3097916 - 3097906 - g 70 -5.4 -4.49311 | ACCAGCATTAGAAAA GATG ATC CATC ATATCGAACAGATAA Cphy_2528 3097694 - 3098092 + | hypothetical protein TERM 3470 3098126 - 3098102 - T 100 -15.9 -5.07567 | opp_overlap 3098109 CTATAGCCTAAAAAA TAGCACAGGAT CAT ATCCTGTGCTA AAATAAAATTCTAAC Cphy_2529 3098708 - 3098151 - | translation elongation factor P Cphy_2530 3099993 - 3098932 - | peptidase M24 TERM 3471 3099567 - 3099556 - G 73 -5.8 -4.44461 | opp_overlap 3099555 AAGAATTTTAGAAAA GGTG ATAT CACC AATATGTTCTGCTTC Cphy_2531 3100587 - 3100150 - | 3-dehydroquinate dehydratase, type II Cphy_2532 3101132 - 3100611 - | shikimate kinase Cphy_2533 3101658 - 3101143 - | HAD family phosphatase TERM 3472 3102246 - 3102214 - H 87 -8.5 -4.3014 | ACACAGTTATCAAAA CAAGAAAAAGCGCGC TTC GCAAACTTTTCCTTG TCATGAATAATAGAA Cphy_2534 3102399 - 3103187 + | gluconate 5-dehydrogenase TERM 3473 3103217 - 3103201 - T 73 -8.1 -3.41569 | overlap 3103199 3103206 AAGAGATATACAATA GAAACTT TAT AAGTTTC TTAAAAAATTAAAGG TERM 3474 3103276 - 3103226 - T 100 -9.9 -5.01732 | opp_overlap 3103230 3103231, overlap 3103231 AAGTTTCTTAAAAAA TTAAAGGAACGTCGCAATAGCTA TGAAT TAGATATTACGACGTTCCCTTTT TTATCATTCCTGACA TERM 3475 3103230 - 3103272 + T 100 -10.7 -5.38249 | opp_overlap 3103226 3103231, overlap 3103231 TTCTTAAAAAATTAA AGGAACGTCGCAATAGCTA TGAAT TAGATATTACGACGTTCCC TTTTTTATCATTCCT TERM 3476 3103271 - 3103231 - T 100 -16.4 -4.42765 | opp_overlap 3103230 3103231, overlap 3103226 TCTTAAAAAATTAAA GGAACGTCGCAATAGCTA TGAAT TAGATATTACGACGTTCC CTTTTTTATCATTCC TERM 3477 3103231 - 3103271 + T 100 -14.2 -3.81322 | opp_overlap 3103231 3103226, overlap 3103230 TCTTAAAAAATTAAA GGAACGTCGCAATAGCTA TGAAT TAGATATTACGACGTTCC CTTTTTTATCATTCC Cphy_2535 3104270 - 3103356 - | aldose 1-epimerase Cphy_2536 3105003 - 3104290 - | peptidase C26 TERM 3478 3104817 - 3104801 - G 70 -3 -5.08601 | gap 1 TCACCCCAATAAAAA GGACTCA CATC TG-GTCC TCCCGGGTACAATAC Cphy_2537 3107510 - 3105417 - | small GTP-binding protein Cphy_2538 3107946 - 3108959 + | phospho-2-dehydro-3-deoxyheptonate aldolase TERM 3479 3109100 - 3109084 - g 95 -8.1 -4.8048 | opp_overlap 3109087 GTTGCATATGAAAAA GAAGATA GTG TATCTTC TGAAAACTTACGAAT TERM 3480 3109549 - 3109573 + G 83 -9.4 -3.84271 | gap 1, opp_overlap 3109544 GCGGATATTAGTCAT GTTCCGCA-CA TTAT TGCTGCGGAAC TTGTTAATCTTGTAA Cphy_2539 3108976 - 3110085 + | prephenate dehydrogenase TERM 3481 3110628 - 3110638 + G 70 -6.8 -4.08279 | overlap 3110623 AGGTAATAGTGGAAC GACG CTC CGTC TTATTTCTGGAATAT Cphy_2540 3110347 - 3111657 + | 3-phosphoshikimate 1-carboxyvinyltransferase TERM 3482 3111815 - 3111847 + T 100 -8.8 -6.08342 | gap 1, opp_overlap 3111815 TGAATAATAAAAAAA TCTTATTTCT-TCTT ACGT AAGATAGAAATAAGA TTTTTTTATTTATTC TERM 3483 3111847 - 3111815 - T 100 -8.8 -5.95946 | gap 1, opp_overlap 3111815 TGAATAATAAAAAAA TCTTATTTCT-TCTT ACGT AAGATAGAAATAAGA TTTTTTTATTTATTC Cphy_2541 3112358 - 3111870 - | hypothetical protein Cphy_2542 3113005 - 3112655 - | peptidoglycan-binding LysM TERM 3484 3113849 - 3113838 - g 76 -5.8 -4.57073 | GATCCTTGTGAAAAA GCAG ACAA CTGC AGAAAATGGGGATTT Cphy_2543 3113407 - 3114021 + | LexA family transcriptional regulator TERM 3485 3114000 - 3114011 + T 74 -5.8 -4.6951 | TCTTGGTATCGTAAT CGGA TTAT TCCG TTTATTTTAAATCGT TERM 3486 3114149 - 3114199 + T 71 -2.2 -5.34655 | gap 3, opp_overlap 3114146 3114149 CTATAAACAAAACAA CTCGAGTTAATGAT-ATGAA-GCAA AAAT TTGCCTTCCCCATCATTA-CTCGAG TTTTATTTTTCATTC Cphy_2544 3114618 - 3114256 - | iojap-like protein Cphy_2545 3115279 - 3114689 - | metal dependent phosphohydrolase Cphy_2546 3115907 - 3115305 - | nicotinate (nicotinamide) nucleotide adenylyltransferase Cphy_2547 3116214 - 3115924 - | hypothetical protein Cphy_2548 3117548 - 3116259 - | GTP-binding protein Obg/CgtA TERM 3487 3117903 - 3117920 + r 71 -7.7 -3.4247 | opp_overlap 3117900 3117897 3117895, overlap 3117900 CGATGAATACAAGAT GAAGCGG TAAG CCGTTTC TCTTGTTCAAATTAT Cphy_2549 3118219 - 3117932 - | 50S ribosomal protein L27 Cphy_2550 3118594 - 3118265 - | hypothetical protein Cphy_2551 3118922 - 3118614 - | ribosomal protein L21 Cphy_2552 3119382 - 3120035 + | hypothetical protein TERM 3488 3120062 - 3120036 - T 71 -8 -3.25072 | opp_overlap 3120040, overlap 3120031 TTCATGACAATTTAA CCCATTAGTAAC TAC GTTGCAAATGGG TTACGAGTTACCAAG Cphy_2553 3121041 - 3120070 - | hypothetical protein TERM 3489 3121119 - 3121129 + r 71 -5.4 -4.56791 | opp_overlap 3121113, overlap 3121113 AATTTAAATGCTCAA TCAG TAA CTGA TTTATCTTTTTAGGT TERM 3490 3121180 - 3121165 - R 82 -2.5 -5.94713 | AGGGTACAAAAAAAA CACCC CCATTC GAGTG CTCTGCAAATTCTAA TERM 3491 3121716 - 3121666 - R 100 -16.1 -4.48176 | gap 2, opp_overlap 3121671 3121675 3121678 3121683, overlap 3121669 3121675 3121683 TAGAAAATGAATAAA GAA--TATAAATAAGAAAAGTACGC AAA GCGTACTTTTCTTATTTATAGGTTC ATCTGTGGCCAAATT TERM 3492 3121711 - 3121669 - R 100 -24 -4.31459 | opp_overlap 3121671 3121675 3121678 3121683, overlap 3121666 3121675 3121683 AAAATGAATAAAGAA TATAAATAAGAAAAGTACGC AAA GCGTACTTTTCTTATTTATA GGTTCATCTGTGGCC TERM 3493 3121671 - 3121709 + r 100 -22.2 -2.59686 | opp_overlap 3121669 3121666 3121675 3121683, overlap 3121675 3121678 3121683 AATGAATAAAGAATA TAAATAAGAAAAGTACGC AAA GCGTACTTTTCTTATTTA TAGGTTCATCTGTGG TERM 3494 3121705 - 3121675 - R 100 -18.6 -4.44099 | opp_overlap 3121671 3121675 3121678 3121683, overlap 3121669 3121666 3121683 AATAAAGAATATAAA TAAGAAAAGTACGC AAA GCGTACTTTTCTTA TTTATAGGTTCATCT TERM 3495 3121675 - 3121705 + r 100 -18.6 -3.99228 | opp_overlap 3121675 3121669 3121666 3121683, overlap 3121671 3121678 3121683 AATAAAGAATATAAA TAAGAAAAGTACGC AAA GCGTACTTTTCTTA TTTATAGGTTCATCT TERM 3496 3121678 - 3121702 + r 100 -15.9 -4.11304 | opp_overlap 3121675 3121669 3121666 3121683, overlap 3121675 3121671 3121683 AAAGAATATAAATAA GAAAAGTACGC AAA GCGTACTTTTC TTATTTATAGGTTCA TERM 3497 3121683 - 3121697 + r 100 -10 -5.05116 | opp_overlap 3121683 3121675 3121669 3121666, overlap 3121678 3121675 3121671 ATATAAATAAGAAAA GTACGC AAA GCGTAC TTTTCTTATTTATAG TERM 3498 3121697 - 3121683 - R 100 -10 -5.06472 | opp_overlap 3121678 3121675 3121671 3121683, overlap 3121675 3121669 3121666 ATATAAATAAGAAAA GTACGC AAA GCGTAC TTTTCTTATTTATAG Cphy_2554 3122647 - 3121808 - | degV family protein Cphy_2555 3123311 - 3122862 - | MarR family transcriptional regulator TERM 3499 3123383 - 3123425 + H 71 -2.2 -5.44119 | opp_overlap 3123384, overlap 3123384 TTAACATTCGTCAAT ATATTTTGAAGTTCAAAGTA ATT TCTTTTGAAGTTCAAAGTAA TTTTTTTAAGATCAA TERM 3500 3124246 - 3124236 - g 70 -5.4 -4.3953 | TCCAAGTATAATAAA TGCA GTG TGCA CGTATCGAAATACGG Cphy_2556 3123682 - 3124554 + | AraC family transcriptional regulator TERM 3501 3124633 - 3124667 + T 88 -11.6 -3.18832 | opp_overlap 3124631 3124635, overlap 3124632 3124635 ATGACATAAGCAATT AAGAGGGTGAAAGT TAATCGT ACTTTCACCCTCTC TCTATTATGGAATTA TERM 3502 3124635 - 3124665 + T 100 -14.2 -3.15013 | opp_overlap 3124635 3124631, overlap 3124633 3124632 GACATAAGCAATTAA GAGGGTGAAAGT TAATCGT ACTTTCACCCTC TCTCTATTATGGAAT TERM 3503 3124665 - 3124635 - T 100 -14.2 -3.49135 | opp_overlap 3124633 3124632 3124635, overlap 3124631 GACATAAGCAATTAA GAGGGTGAAAGT TAATCGT ACTTTCACCCTC TCTCTATTATGGAAT Cphy_2557 3125471 - 3124680 - | cell envelope-related transcriptional attenuator TERM 3504 3124778 - 3124789 + g 71 -4.4 -4.73448 | CAGCTTTATACTTTT TACC ACTT GGTA TTTTTAAATCTATAT Cphy_2558 3125909 - 3125499 - | hypothetical protein TERM 3505 3126141 - 3126161 + r 100 -12.7 -5.34555 | opp_overlap 3126141 TCCATCATTAAAAAA CTGTAGACA AAT TGTCTACAG TTTTTTATAGTCTCA TERM 3506 3126161 - 3126141 - R 100 -12.7 -5.1861 | opp_overlap 3126141 TCCATCATTAAAAAA CTGTAGACA AAT TGTCTACAG TTTTTTATAGTCTCA Cphy_2559 3126736 - 3126185 - | hypothetical protein Cphy_2560 3127163 - 3126729 - | pyridoxamine 5'-phosphate oxidase-related FMN-binding Cphy_2561 3127612 - 3127160 - | MarR family transcriptional regulator TERM 3507 3127198 - 3127209 + g 74 -4.4 -5.0133 | TTAGATTATCGAGCA CTCT TAAC AGAG TTTTTTCAAAGGCTA Cphy_2562 3128557 - 3128084 - | ybaK/ebsC protein TERM 3508 3128575 - 3128633 + r 80 -7.1 -4.57882 | opp_overlap 3128582 3128591 3128597, overlap 3128591 3128597 ATTTCACCATTCCTG TATAAG-ATTCATACAAGGAAAAGTACGC AAA GCGTACTTTTCCTTAT-TGAAAACTTAGG TTTATTCTTCTTCAC TERM 3509 3128625 - 3128582 - R 100 -18.6 -3.21593 | gap 1, opp_overlap 3128575 3128591 3128597, overlap 3128591 3128597 CATTCCTGTATAAGA TTCATACAAGGAAAAGTACGC AAA GCGTACTTTTCCTTAT-TGAA AACTTAGGTTTATTC TERM 3510 3128617 - 3128591 - R 100 -18.2 -3.55582 | opp_overlap 3128575 3128591 3128597, overlap 3128582 3128597 ATAAGATTCATACAA GGAAAAGTACGC AAA GCGTACTTTTCC TTATTGAAAACTTAG TERM 3511 3128591 - 3128617 + r 100 -18.2 -3.63569 | opp_overlap 3128591 3128582 3128597, overlap 3128575 3128597 ATAAGATTCATACAA GGAAAAGTACGC AAA GCGTACTTTTCC TTATTGAAAACTTAG TERM 3512 3128611 - 3128597 - R 93 -10 -4.53034 | opp_overlap 3128597 3128591 3128575, overlap 3128591 3128582 TTCATACAAGGAAAA GTACGC AAA GCGTAC TTTTCCTTATTGAAA TERM 3513 3128597 - 3128611 + r 93 -10 -4.56133 | opp_overlap 3128591 3128582 3128597, overlap 3128591 3128575 TTCATACAAGGAAAA GTACGC AAA GCGTAC TTTTCCTTATTGAAA Cphy_2563 3129849 - 3128635 - | ribonuclease Cphy_2564 3130806 - 3129934 - | hypothetical protein Cphy_2565 3132809 - 3130923 - | radical SAM domain-containing protein TERM 3514 3131052 - 3131066 + g 75 -7.2 -4.24342 | TATTGCATGTTCATA TTCCTT ACG AAGGAA TTTCTTCGTAACACC TERM 3515 3133007 - 3132990 - R 100 -7.7 -5.58179 | opp_overlap 3132990 3133006 CATTATAACAAAAAA GAGTGGA GATA TCCACCC TTTCATTGAAACGTA Cphy_2566 3133432 - 3133025 - | hypothetical protein Cphy_2567 3135006 - 3133582 - | glycoside hydrolase family protein Cphy_2568 3135972 - 3135310 - | Fe-S protein-like protein TERM 3516 3136112 - 3136077 - R 87 -5.6 -5.63103 | opp_overlap 3136077 3136103 TTTTAATTAAAAAAA CTACGATAGCAT CTTTCTTCTTCC ATGCTACCGTAG CTTTTTATATCAATG TERM 3517 3136103 - 3136113 + r 76 -5.4 -4.99035 | opp_overlap 3136077, overlap 3136077 TCTTTCTTCTTCCAT GCTA CCG TAGC TTTTTATATCAATGA Cphy_2569 3137703 - 3136132 - | extracellular solute-binding protein Cphy_2570 3138693 - 3137758 - | binding-protein-dependent transport systems inner membrane component Cphy_2571 3139672 - 3138707 - | binding-protein-dependent transport systems inner membrane component TERM 3518 3140365 - 3140346 - g 72 -3.6 -4.93288 | opp_overlap 3140349, overlap 3140349 AATATTGAAACAAAA TTATCCTA ATCT TAGGATTA ATCTAGCTATCGGAG TERM 3519 3141016 - 3141006 - g 73 -5.4 -4.61231 | opp_overlap 3141009 TTATATTTCTAAAAA TGGT TAT ACCA GATACTGGGATGATA Cphy_2572 3140149 - 3141216 + | glycoside hydrolase family protein Cphy_2573 3142094 - 3141426 - | hypothetical protein TERM 3520 3142111 - 3142133 + r 82 -7.8 -4.41177 | AACTTTCATCTTCGA TGTGAAGAAA CTC TTCCTTCACA TTTTCCCTTTCTGTA Cphy_2574 3143920 - 3142451 - | lysyl-tRNA synthetase TERM 3521 3144193 - 3144170 - R 100 -9.6 -6.08342 | opp_overlap 3144170 3144189, overlap 3144189 CAATAAATAAAAAAA TCCCGTCCTC ACAA AAGGACGAGA TTAATATCACGTGTT Cphy_2575 3145144 - 3144614 - | GCN5-related N-acetyltransferase Cphy_2576 3145902 - 3145396 - | acetyltransferase Cphy_2577 3146476 - 3146075 - | hypothetical protein Cphy_2578 3146942 - 3148174 + | tyrosyl-tRNA synthetase Cphy_2579 3148199 - 3149149 + | hypothetical protein TERM 3522 3149175 - 3149224 + T 100 -18.4 -5.10064 | gap 1, opp_overlap 3149175 TTCAAACATTAAAAA GAGGGAAGTAAAACTT-TAGATA AGATA TATCTATAGGTTTTACTTCCCTC TTTTTATGTCTTAAG TERM 3523 3149224 - 3149175 - T 100 -16.2 -4.93696 | gap 1, opp_overlap 3149175 TTCAAACATTAAAAA GAGGGAAGTAAAA-CTTTAGATA AGATA TATCTATAGGTTTTACTTCCCTC TTTTTATGTCTTAAG Cphy_2580 3152451 - 3149242 - | non-specific serine/threonine protein kinase TERM 3524 3151578 - 3151590 + g 78 -4.1 -5.40464 | CACCCTCGGACAATG GAATC ACA GGTTC TTTTTCTTTATAATC Cphy_2581 3154335 - 3152644 - | sulphate transporter TERM 3525 3153617 - 3153633 + g 81 -9.5 -3.6692 | overlap 3153615 GGTACAGTTAATGTT CTTGGAA TCA TTCCAAG TGTTTTCACATCCAA TERM 3526 3154456 - 3154492 + r 95 -10.4 -4.46254 | gap 1, opp_overlap 3154456 CACCATTTAAAAAAA CCAGCTATTCTAAAAGC GATT GCTTTAA-AATAGCTGG TTTCTTATATATTCA TERM 3527 3154492 - 3154456 - R 100 -12.6 -5.48825 | gap 1, opp_overlap 3154456 CACCATTTAAAAAAA CCAGCTATTCTAAAAGC GATT GCTTT-AAAATAGCTGG TTTCTTATATATTCA Cphy_2582 3155883 - 3154594 - | Serine-type D-Ala-D-Ala carboxypeptidase TERM 3528 3155985 - 3155950 - R 100 -10.7 -5.65177 | ATATGCATAAAAAAA GATGTCTATGAAACC TACTAT GATTTCATAAACATC CTAACAAGTCAACCC Cphy_2583 3156698 - 3156129 - | segregation and condensation protein B Cphy_2584 3157497 - 3156718 - | chromosome segregation and condensation protein ScpA TERM 3529 3157467 - 3157449 - G 91 -9.6 -4.37711 | CGATTAAATGTAAAA GAAGATCC AAG GGACCTTC AAATGCTTCCAGCTT Cphy_2585 3158062 - 3157502 - | hypothetical protein TERM 3530 3157976 - 3157936 - G 100 -7.7 -5.57729 | opp_overlap 3157964 AAATAACACAAAAAA TCAAACCAATCGGATCCAC AAA ATGAACCGGATTGATTCGA TTCTCAAATTTTTTA Cphy_2586 3158979 - 3158113 - | metallophosphoesterase TERM 3531 3159063 - 3159017 - R 87 -10.6 -3.6692 | gap 1, opp_overlap 3159016 3159017 3159019 3159062, overlap 3159015 TTGCACCTTAAAAGA TATGCAAAATAG-TTTGCC TTAATTCCTT GGCAAAACTATTTTGCATA ATTCCTAATTATATT TERM 3532 3159017 - 3159063 + r 79 -10.6 -2.59079 | gap 1, opp_overlap 3159017 3159015, overlap 3159016 3159019 3159062 TTGCACCTTAAAAGA TATGCAAAATAG-TTTGCC TTAATTCCTT GGCAAAACTATTTTGCATA ATTCCTAATTATATT TERM 3533 3159019 - 3159061 + r 71 -8.8 -2.82529 | gap 1, opp_overlap 3159017 3159015, overlap 3159017 3159016 GCACCTTAAAAGATA TGCAAAATAG-TTTGCC TTAATTCCTT GGCAAAACTATTTTGCA TAATTCCTAATTATA TERM 3534 3159189 - 3159168 - R 72 -8.9 -2.64794 | opp_overlap 3159160 3159173, overlap 3159170 3159173 GGTAAGCTTATATGA TATAATGTC TAAC GACATTATA CCATGAACTTAGGTT Cphy_2587 3160576 - 3159224 - | Serine-type D-Ala-D-Ala carboxypeptidase Cphy_2588 3161331 - 3160744 - | hypothetical protein TERM 3535 3161451 - 3161489 + r 84 -11.1 -3.04263 | opp_overlap 3161454, overlap 3161454 ATGTGTGAAGTTTTA GAATTTCTTAGGCGGCG TCTTT TGGCGCCTTAGAAATTC TCTTCACACTCAAAT Cphy_2589 3164493 - 3161650 - | hypothetical protein TERM 3536 3164422 - 3164444 + g 79 -4.8 -5.18866 | opp_overlap 3164424, overlap 3164424 TGCAACGATTAACAG AATGGACAAG AAT CTGGTCCATG TTTTCTTTATTTCAA TERM 3537 3164424 - 3164442 + g 75 -7.4 -4.20284 | opp_overlap 3164424, overlap 3164422 CAACGATTAACAGAA TGGACAAG AAT CTGGTCCA TGTTTTCTTTATTTC Cphy_2590 3165218 - 3164514 - | ABC transporter related TERM 3538 3165477 - 3165444 - R 82 -7.6 -4.46835 | gap 2, opp_overlap 3165444 3165441 ATAACTGTAAAGAAA CTGCGGCG--TACCTT AAAT AAGATAAACGCCGCAG TTCTTTTTAGAACTT Cphy_2591 3166809 - 3165484 - | pyrimidine-nucleoside phosphorylase Cphy_2592 3167211 - 3168242 + | phospho-2-dehydro-3-deoxyheptonate aldolase Cphy_2593 3169351 - 3168476 - | integrase family protein TERM 3539 3169291 - 3169301 + g 79 -3.2 -5.57729 | AAGCACTTAAGGTAT TGTC TGT GGCA TTTTTTATATTCTTT Cphy_2594 3170114 - 3169548 - | hypothetical protein TERM 3540 3170122 - 3170094 - G 78 -5.3 -5.04385 | opp_overlap 3170089 3170094 GACACTTGCAAAAAA GAGAACCATGG CTATTGT CAACGGTTCTC TTTTCCTTAATCTTA Cphy_2595 3170750 - 3170220 - | NUDIX hydrolase TERM 3541 3171142 - 3171114 - R 95 -10.4 -4.67755 | opp_overlap 3171114 ATAGGGACTGAAAAA GCTGACTCCTGT GCTAT ACAGAAATCAGC TTTTAGCTTCTTAAC TERM 3542 3171114 - 3171142 + r 78 -6.7 -4.36127 | opp_overlap 3171114 ATAGGGACTGAAAAA GCTGACTCCTGTG CTA TACAGAAATCAGC TTTTAGCTTCTTAAC Cphy_2596 3172373 - 3171201 - | Ig domain-containing protein TERM 3543 3172474 - 3172508 + H 75 -9.6 -2.80958 | opp_overlap 3172473 3172474 3172478 3172500, overlap 3172471 3172478 TGTTGATTGAAAAAC TAGATTCCATTTTTAA ATA TTAAATATGGAATTTA CTCTTTCTTAAACTC TERM 3544 3172478 - 3172504 + H 79 -8.2 -4.07859 | opp_overlap 3172474 3172473 3172478 3172500, overlap 3172474 3172471 GATTGAAAAACTAGA TTCCATTTTTAA ATA TTAAATATGGAA TTTACTCTTTCTTAA TERM 3545 3172504 - 3172478 - H 71 -8.2 -3.19102 | opp_overlap 3172478 3172474 3172471, overlap 3172474 3172473 3172500 GATTGAAAAACTAGA TTCCATTTTTAA ATA TTAAATATGGAA TTTACTCTTTCTTAA Cphy_2597 3172580 - 3173884 + | transposase TERM 3546 3173981 - 3173991 + T 81 -3.2 -5.80364 | TCTCCAGTCGTCTGT TTGC CAT GCAG TTTTTTTATTCCGAT TERM 3547 3174791 - 3174848 + T 100 -12.5 -4.73341 | gap 1, opp_overlap 3174793, overlap 3174793 GTACCTATTCAAAAA AATGAGGTTGT-AAAAGTATTATAAATG CAA CATTTATAACACTTTCCACAACCTCATG TTTATTTCATTTTTT TERM 3548 3174793 - 3174846 + T 100 -15.1 -3.92649 | gap 1, opp_overlap 3174793, overlap 3174791 ACCTATTCAAAAAAA TGAGGTTGT-AAAAGTATTATAAATG CAA CATTTATAACACTTTCCACAACCTCA TGTTTATTTCATTTT TERM 3549 3174846 - 3174793 - T 100 -19.5 -5.47821 | gap 1, opp_overlap 3174793 3174791 ACCTATTCAAAAAAA TGAGGTTGT-AAAAGTATTATAAATG CAA CATTTATAACACTTTCCACAACCTCA TGTTTATTTCATTTT Cphy_2598 3176412 - 3174862 - | RNA binding metal dependent phosphohydrolase TERM 3550 3175080 - 3175100 + g 70 -9.1 -3.05498 | overlap 3175065 CGTTGGTAATATCTT CTAACTGTT TCA AACGGTTAG TATATGTCTCCAATG TERM 3551 3176414 - 3176424 + r 79 -6.8 -4.67692 | opp_overlap 3176414 ATCTTTATAAGCACA GGAG CAC CTCC TTTATTTAGTTTTCA Cphy_2599 3178060 - 3176597 - | tRNA-i(6)A37 thiotransferase enzyme MiaB Cphy_2600 3179634 - 3178387 - | gamma-glutamyl phosphate reductase Cphy_2601 3180312 - 3179740 - | 5-formyltetrahydrofolate cyclo-ligase Cphy_2602 3180524 - 3180315 - | hypothetical protein Cphy_2603 3181697 - 3180849 - | glutamate 5-kinase Cphy_2604 3183498 - 3181852 - | oxidoreductase, FAD-binding Cphy_2605 3184740 - 3183517 - | hypothetical protein TERM 3552 3184536 - 3184493 - G 91 -6 -5.54264 | gap 1 AAAGACTGAAAAAAA GCAATGGTTTGCTCCACGTCA AAC TGACGTAGCACTG-CCATTGC AAATTCAGGATGAGT Cphy_2606 3185477 - 3184797 - | hypothetical protein Cphy_2607 3187173 - 3185539 - | virulence factor MVIN family protein Cphy_2608 3188606 - 3187347 - | hypothetical protein TERM 3553 3188543 - 3188569 + g 100 -14.6 -3.07236 | opp_overlap 3188541 3188538, overlap 3188551 CAGGCTCAAATATCC GTGTGAAAGAAC TTC GTTCTTTCACGC TATTACAGTCAGTTT Cphy_2609 3189208 - 3188711 - | hypothetical protein TERM 3554 3189284 - 3189266 - R 77 -7.6 -3.99228 | opp_overlap 3189261 3189265 3189266, overlap 3189261 GAATTTAAAATATAA TCTATATT GCT AATATAGA ATTCCTTCAATTTAT Cphy_2610 3190614 - 3189247 - | metal dependent phosphohydrolase TERM 3555 3189903 - 3189919 + g 76 -5.9 -4.56775 | overlap 3189915 GATCTTTCGTCTGTG GAAAAGT AGA GCTTTTC TTTTTAGAAGAAAAT Cphy_2611 3191701 - 3190646 - | PhoH family protein Cphy_2612 3192914 - 3191676 - | putative stage IV sporulation YqfD Cphy_2613 3193380 - 3192997 - | hypothetical protein TERM 3556 3193582 - 3193637 + r 90 -9.4 -4.24326 | opp_overlap 3193588, overlap 3193585 3193587 3193588 3193590 CGTAATTTCATATCT AAAAAATAGCTTATGTACTTAATATT TTCC AATCTTAAGTACATAAGCTACTATTA TTTTACCTAATATTT TERM 3557 3193585 - 3193634 + r 100 -11.1 -4.22883 | opp_overlap 3193588, overlap 3193582 3193587 3193588 3193590 AATTTCATATCTAAA AAATAGCTTATGTACTTAATATT TTCC AATCTTAAGTACATAAGCTACTA TTATTTTACCTAATA TERM 3558 3193587 - 3193632 + r 100 -13.7 -3.70622 | opp_overlap 3193588, overlap 3193585 3193582 3193588 3193590 TTTCATATCTAAAAA ATAGCTTATGTACTTAATATT TTCC AATCTTAAGTACATAAGCTAC TATTATTTTACCTAA TERM 3559 3193631 - 3193588 - R 100 -17.2 -5.1287 | opp_overlap 3193587 3193585 3193582 3193588 3193590 TTCATATCTAAAAAA TAGCTTATGTACTTAATATT TTCC AATCTTAAGTACATAAGCTA CTATTATTTTACCTA TERM 3560 3193588 - 3193631 + r 100 -17.2 -2.8165 | opp_overlap 3193588, overlap 3193587 3193585 3193582 3193590 TTCATATCTAAAAAA TAGCTTATGTACTTAATATT TTCC AATCTTAAGTACATAAGCTA CTATTATTTTACCTA TERM 3561 3193590 - 3193629 + r 100 -15.4 -2.94356 | opp_overlap 3193588, overlap 3193588 3193587 3193585 3193582 CATATCTAAAAAATA GCTTATGTACTTAATATT TTCC AATCTTAAGTACATAAGC TACTATTATTTTACC Cphy_2614 3194405 - 3193740 - | nitrogen regulatory protein P-II TERM 3562 3193947 - 3193970 + g 72 -3.8 -4.94902 | opp_overlap 3193949, overlap 3193948 3193949 3193967 ACCTCTGGCATTAAT TATGGTTCCA CCTT TGGAACCAGC TTTTTGTGCTGCTTC TERM 3563 3193968 - 3193949 - G 79 -10.8 -2.77899 | opp_overlap 3193948 3193947 3193949 3193967 CTCTGGCATTAATTA TGGTTCCA CCTT TGGAACCA GCTTTTTGTGCTGCT TERM 3564 3193949 - 3193968 + g 78 -10.8 -2.7243 | opp_overlap 3193949, overlap 3193948 3193947 3193967 CTCTGGCATTAATTA TGGTTCCA CCTT TGGAACCA GCTTTTTGTGCTGCT TERM 3565 3194313 - 3194323 + g 70 -5.4 -4.45664 | ACCTGTTATCCCCTG TTGC TTT GCAA TTTTCATTACCTTCC Cphy_2615 3195924 - 3194398 - | hypothetical protein TERM 3566 3196341 - 3196373 + r 100 -13.7 -3.55444 | opp_overlap 3196345 3196352, overlap 3196352 CGGAGAGTTTTTTAA TTTATAGGTAATTGC TGC GCAATTTCCTATAAA TTTAAAAAATACCCC TERM 3567 3196369 - 3196345 - R 77 -10.1 -2.52676 | opp_overlap 3196341 3196352, overlap 3196352 GAGTTTTTTAATTTA TAGGTAATTGC TGC GCAATTTCCTA TAAATTTAAAAAATA TERM 3568 3196405 - 3196383 - R 95 -8.5 -5.24449 | gap 1, opp_overlap 3196384 3196385, overlap 3196385 TATAAATTTAAAAAA TACCCCAGTC TAAT GACTGGGG-A TTCTTGCACATATTA TERM 3569 3196384 - 3196405 + r 86 -10.1 -3.65201 | opp_overlap 3196383 3196385, overlap 3196385 ATAAATTTAAAAAAT ACCCCAGTC TAAT GACTGGGGA TTCTTGCACATATTA TERM 3570 3196385 - 3196404 + r 100 -13.6 -2.78639 | opp_overlap 3196385 3196383, overlap 3196384 TAAATTTAAAAAATA CCCCAGTC TAAT GACTGGGG ATTCTTGCACATATT TERM 3571 3196404 - 3196385 - R 100 -13.6 -4.23298 | opp_overlap 3196384 3196385, overlap 3196383 TAAATTTAAAAAATA CCCCAGTC TAAT GACTGGGG ATTCTTGCACATATT Cphy_2616 3196594 - 3196418 - | ribosomal protein S21 Cphy_2617 3199474 - 3196835 - | alanyl-tRNA synthetase TERM 3572 3199894 - 3199860 - H 86 -7.3 -4.88736 | opp_overlap 3199860, overlap 3199867 TACTATTTAGAAAAA TAAAAAAGACACATC CTATT GAAGTGCCTTTTCTA TTCATTATTAACTTA TERM 3573 3199887 - 3199867 - H 85 -3.2 -5.98675 | opp_overlap 3199860, overlap 3199860 TAGAAAAATAAAAAA GACACATC CTATT GAAGTGCC TTTTCTATTCATTAT Cphy_2618 3200545 - 3201744 + | Ig domain-containing protein TERM 3574 3201860 - 3201807 - T 82 -7.8 -4.4767 | gap 1, opp_overlap 3201807 TGATTTAGCATAAAA TAAGCCCTTAGATTGTTTAAGATAA GTTTT TTATCCATAACAA-CTAAAGGCTTA TTTTATTGAGAAAAT TERM 3575 3202057 - 3202112 + T 90 -12.5 -2.81509 | opp_overlap 3202062, overlap 3202062 ATTTACGTGAAAACT AAAAATGCTCTGAAATACTTATAA-TC ACTA GACTTA-AAGTATTTCAGAGCATTTTA TAGTTCAATCTTTTA TERM 3576 3202062 - 3202107 + T 100 -12.4 -4.55491 | opp_overlap 3202062, overlap 3202057 CGTGAAAACTAAAAA TGCTCTGAAATACTTATAA-TC ACTA GACTTA-AAGTATTTCAGAGCA TTTTATAGTTCAATC TERM 3577 3202107 - 3202062 - T 100 -14.3 -5.0925 | opp_overlap 3202057 3202062 CGTGAAAACTAAAAA TGCTCTGAAATACTTATAATC ACTA GACTTAAAGTATTTCAGAGCA TTTTATAGTTCAATC TERM 3578 3202594 - 3202580 - T 77 -8.6 -3.75024 | opp_overlap 3202576 3202574, overlap 3202584 3202586 TCTCATCACGAACAA GAAAGG TCA CCTTTC GTGAACTTTTCTTAA Cphy_2619 3207377 - 3202794 - | DNA polymerase III, alpha subunit TERM 3579 3207122 - 3207160 + g 79 -6.9 -4.45544 | gap 1, opp_overlap 3207131, overlap 3207123 3207131 ATTCCGGGGTATATT G-CGAAGAAAGTTGATAG GTTT CTATCAACTTTACTCGAC TTTTGGTTGATGAAA TERM 3580 3207123 - 3207158 + g 75 -10.6 -2.55624 | opp_overlap 3207131, overlap 3207122 3207131 TTCCGGGGTATATTG CGAAGAAAGTTGATAG GTTT CTATCAACTTTACTCG ACTTTTGGTTGATGA TERM 3581 3207150 - 3207131 - G 85 -9.4 -4.17556 | opp_overlap 3207123 3207122 3207131 TATATTGCGAAGAAA GTTGATAG GTTT CTATCAAC TTTACTCGACTTTTG TERM 3582 3207131 - 3207150 + g 81 -9.4 -3.79021 | opp_overlap 3207131, overlap 3207123 3207122 TATATTGCGAAGAAA GTTGATAG GTTT CTATCAAC TTTACTCGACTTTTG TERM 3583 3207192 - 3207179 - G 100 -8.1 -5.14563 | TGGTTGATGAAAAAA GCTGC TTTT GCAGC TGAAATTCCATCATT TERM 3584 3207404 - 3207436 + r 100 -16.5 -4.12397 | opp_overlap 3207407 3207413, overlap 3207383 3207407 3207413 ACGCCTTATTCTTGA CAAGAAAAAGTTCGC GAA GCGTACTTTTTCTTG TTTATACTTATCTCG TERM 3585 3207433 - 3207407 - R 90 -12.4 -3.30124 | opp_overlap 3207383 3207404 3207407 3207413, overlap 3207413 CCTTATTCTTGACAA GAAAAAGTTCGC GAA GCGTACTTTTTC TTGTTTATACTTATC TERM 3586 3207407 - 3207433 + r 100 -12.4 -4.16837 | opp_overlap 3207407 3207413, overlap 3207383 3207404 3207413 CCTTATTCTTGACAA GAAAAAGTTCGC GAA GCGTACTTTTTC TTGTTTATACTTATC TERM 3587 3207413 - 3207427 + r 84 -5.6 -5.42164 | opp_overlap 3207413 3207407, overlap 3207383 3207407 3207404 TCTTGACAAGAAAAA GTTCGC GAA GCGTAC TTTTTCTTGTTTATA TERM 3588 3207427 - 3207413 - R 80 -5.6 -5.18726 | opp_overlap 3207383 3207407 3207404 3207413, overlap 3207407 TCTTGACAAGAAAAA GTTCGC GAA GCGTAC TTTTTCTTGTTTATA TERM 3589 3207587 - 3207536 - R 95 -9.3 -5.2015 | gap 2, opp_overlap 3207537 3207541 3207548, overlap 3207537 3207539 3207541 TTAACAAGATAAAAA CTATATAGGAAATAAGTTGAAAAAA ATAC TTCTCTCAACTTATTTCCTAT-T-G ATTATATAAAGCTAT TERM 3590 3207588 - 3207537 - R 95 -12 -3.70463 | opp_overlap 3207537 3207541 3207548, overlap 3207536 3207539 3207541 TAACAAGATAAAAAC TATATAGGAAATAAGTTGAAAAAA ATAC TTCTCTCAACTTATTTCCTATTGA TTATATAAAGCTATC TERM 3591 3207537 - 3207588 + r 71 -7.6 -3.49951 | opp_overlap 3207536 3207537 3207539 3207541, overlap 3207541 3207548 TAACAAGATAAAAAC TATATAGGAAATAAGTTGAAAAAA ATAC TTCTCTCAACTTATTTCCTATTGA TTATATAAAGCTATC TERM 3592 3207586 - 3207539 - R 100 -14.6 -3.40146 | opp_overlap 3207537 3207541 3207548, overlap 3207536 3207537 3207541 ACAAGATAAAAACTA TATAGGAAATAAGTTGAAAAAA ATAC TTCTCTCAACTTATTTCCTATT GATTATATAAAGCTA TERM 3593 3207541 - 3207584 + r 100 -12.8 -3.49618 | opp_overlap 3207539 3207536 3207537 3207541, overlap 3207537 3207548 AAGATAAAAACTATA TAGGAAATAAGTTGAAAAAA ATAC TTCTCTCAACTTATTTCCTA TTGATTATATAAAGC TERM 3594 3207584 - 3207541 - R 100 -17.2 -3.24588 | opp_overlap 3207541 3207537 3207548, overlap 3207539 3207536 3207537 AAGATAAAAACTATA TAGGAAATAAGTTGAAAAAA ATAC TTCTCTCAACTTATTTCCTA TTGATTATATAAAGC Cphy_2620 3208641 - 3207589 - | 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase TERM 3595 3207955 - 3207969 + g 75 -8.6 -3.54489 | TAAGGAAACTCGAAT GGTATC ACC GATACC TTGATTTAAAATTAA TERM 3596 3208659 - 3208671 + r 90 -9.1 -4.57073 | TATCCTCTTTTCTAT GCCAC TAC GTGGC TTTTTAAAACAGGTA TERM 3597 3208699 - 3208681 - R 74 -7.4 -4.07568 | CGTGGCTTTTTAAAA CAGGTAAG TTC CTTCCCTG ATGAGGTTAACTTCT Cphy_2621 3210005 - 3208713 - | membrane-associated zinc metalloprotease TERM 3598 3209045 - 3209074 + g 89 -10.9 -4.15029 | overlap 3209054 CTGCTCCAACCTTGC CAGTAAAGAGCTT ACCA AGGCTTTTTACTG TTGTTTCTATCCAGT Cphy_2622 3211209 - 3210043 - | 1-deoxy-D-xylulose 5-phosphate reductoisomerase Cphy_2623 3212129 - 3211320 - | phosphatidate cytidylyltransferase Cphy_2624 3212905 - 3212183 - | undecaprenyl diphosphate synthase TERM 3599 3212438 - 3212454 + g 78 -3.7 -5.29445 | GGATAATTTTCCATC TTTCACA TCC TGTGCAA TTTTTCTTGTTGCAC TERM 3600 3212602 - 3212615 + g 70 -3.1 -5.01676 | TGATATCTCCGATCA CATGT ACTC GCATG TTATTTTTTTTACTT TERM 3601 3213064 - 3213028 - R 90 -8.2 -4.82901 | gap 1, opp_overlap 3213028 3213030 3213062 CCTGTCGTATAAAAA TAGGACGTAT-GGACCT TAAA AAGTCTTATACGTCCTA TATAATAGCTTATCG Cphy_2625 3213804 - 3213250 - | ribosome recycling factor TERM 3602 3213776 - 3213786 + g 70 -5.4 -4.46531 | GATTTCTGCATTTTA CCTT CAA AAGG TTTAATTTTTTCATT Cphy_2626 3214550 - 3213846 - | uridylate kinase Cphy_2627 3215790 - 3214681 - | hypothetical protein Cphy_2628 3216515 - 3215937 - | ArsR family transcriptional regulator Cphy_2629 3216907 - 3216530 - | hypothetical protein TERM 3603 3217166 - 3217156 - R 71 -6.8 -3.99938 | opp_overlap 3217156, overlap 3217154 CTGACAAAATAAATA TGCC CTT GGCA TTGTCGGAGGAAATA TERM 3604 3217237 - 3217202 - R 100 -8.4 -5.85737 | opp_overlap 3217202 ATACCAATAAAAAAA GGACAAACAAAAGAGC CAAA ACTCCTTAATTTGTCC TTTTTCGATATATCT Cphy_2630 3218030 - 3217257 - | nitroreductase family protein Cphy_2631 3218523 - 3218143 - | glyoxalase/bleomycin resistance protein/dioxygenase TERM 3605 3218621 - 3218634 + r 80 -5.3 -5.27779 | AATATGTCTCTATAT GAGTA ACTA TACTC TTTTTTCCTCTTAAC TERM 3606 3218780 - 3218806 + r 80 -8.9 -3.65529 | gap 1, opp_overlap 3218780 GGTTGTACCTAAAAA GAGAC-TTGGTA CTAC TACCAAAGTCTC TTTCCCTACGAATGT TERM 3607 3218806 - 3218780 - R 90 -8.9 -4.65895 | gap 1, opp_overlap 3218780 GGTTGTACCTAAAAA GAGAC-TTGGTA CTAC TACCAAAGTCTC TTTCCCTACGAATGT Cphy_2632 3220573 - 3218942 - | glycoside hydrolase family protein TERM 3608 3220703 - 3220686 - R 72 -2.7 -5.37345 | overlap 3220689 TCGAATCATAAAAAA TTAGTAG TTTT CTACTGA AAAAATTTAAGGCCT TERM 3609 3220760 - 3220709 - R 95 -9.1 -5.08824 | gap 1, overlap 3220710 TTTCTACTGAAAAAA TTTAAGGCCTCTGTTTCTTACTGT ATTCA ACAGTAA-AAACAAAAGCCCTAAC ATACCTAATTAACCC TERM 3610 3220759 - 3220710 - R 95 -12.6 -3.64812 | gap 1, overlap 3220709 TTCTACTGAAAAAAT TTAAGGCCTCTGTTTCTTACTGT ATTCA ACAGTAA-AAACAAAAGCCCTAA CATACCTAATTAACC Cphy_2633 3221194 - 3220769 - | flavodoxin Cphy_2634 3222473 - 3222015 - | ethanolamine utilisation EutQ family protein Cphy_2635 3223670 - 3222582 - | ethanolamine utilisation protein EutH Cphy_2636 3224240 - 3223683 - | microcompartments protein Cphy_2637 3224505 - 3224230 - | ethanolamine utilization protein EutN/carboxysome structural protein Ccml Cphy_2638 3225243 - 3224521 - | hypothetical protein Cphy_2639 3226042 - 3225395 - | propanediol utilization protein TERM 3611 3226114 - 3226137 + r 90 -12.6 -3.35467 | GTAGTCAAACTTGCT GAGTGAAAGA TTTA TCTTTCACTC TTCCTCCTTTCTAAC Cphy_2640 3227033 - 3226236 - | cobalamin adenosyltransferase TERM 3612 3227096 - 3227065 - R 83 -10.3 -3.12595 | gap 1, overlap 3227063 3227068 CTTAACTACCTAATA CTA-TTGTGCCGGG TATTT CCCGGCACAAGTAA GGCACATCACCAAAG TERM 3613 3227092 - 3227068 - R 100 -15.8 -2.76736 | overlap 3227063 3227065 AACTACCTAATACTA TTGTGCCGGG TATTT CCCGGCACAA GTAAGGCACATCACC Cphy_2641 3227429 - 3227139 - | microcompartments protein Cphy_2642 3228984 - 3227497 - | acetaldehyde dehydrogenase (acetylating) TERM 3614 3228101 - 3228126 + g 78 -5.5 -4.89852 | GGATTCATTGTTCCA TTGGCACGT AAGATAAA ACGTGCTAA TTTTTCTGACTCTGC TERM 3615 3228331 - 3228313 - G 71 -8.9 -3.14132 | TGTTTTGTCGATGAA TGCTGGT CCATT ACCAGCA CCAACACCTATTGCA TERM 3616 3228523 - 3228537 + g 74 -2.8 -5.40072 | ACAAATAACCTTAAC TGTTTC CAA GATACA TTTTTTTGCACCAGG TERM 3617 3228582 - 3228599 + g 70 -5.7 -4.42386 | CGATACAGTTACCTG CTTTAAT TGAA ATTAAAG TTTTATACATAACAG Cphy_2643 3230090 - 3228999 - | microcompartments protein Cphy_2644 3230748 - 3230092 - | microcompartments protein TERM 3618 3230799 - 3230774 - R 77 -9.9 -2.71011 | opp_overlap 3230765 ATTCTGTCGCAATTA GTGTGAAAAAT CTTT ACTTTTCACAC TGACCTCGATTCTAG Cphy_2645 3231754 - 3230864 - | ethanolamine ammonia-lyase small subunit TERM 3619 3231544 - 3231556 + g 80 -6.3 -5.0666 | overlap 3231535 TCTTACTCTTCATGT GAAGA TAT TCTTC TTTATTTTTTGCATG Cphy_2646 3233149 - 3231785 - | ethanolamine ammonia lyase large subunit TERM 3620 3231860 - 3231874 + g 78 -8.6 -3.7948 | opp_overlap 3231859 3231856 GCCCATATGAATCAT CCATTC ATG GAATGG TTTGATGGCTGTTAA TERM 3621 3233233 - 3233222 - R 72 -7.2 -3.89971 | TATAATGATATCAAA GCGC CATC GCGC TAATGAAGTCTATGC TERM 3622 3233285 - 3233306 + r 76 -7.3 -4.31608 | TCAGGTTACTTTCCT GCATTTAGG ATTA CCAAAATGC TTCTTTCTATTTATT Cphy_2647 3234782 - 3233313 - | reactivating factor for ethanolamine ammonia lyase Cphy_2648 3235330 - 3234881 - | ethanolamine utilization protein, EutP Cphy_2649 3235848 - 3235495 - | microcompartments protein Cphy_2650 3237003 - 3235873 - | iron-containing alcohol dehydrogenase TERM 3623 3236323 - 3236333 + g 70 -5.4 -4.47163 | opp_overlap 3236316, overlap 3236316 3236321 TCCAGCAATGCACGA TGCA TTA TGCA TTCTTTCTTTTGCTT TERM 3624 3237161 - 3237129 - R 76 -6.3 -4.59293 | opp_overlap 3237129 3237132, overlap 3237132 TAAATATGAAATAAA CAAGAAAAAGATCGC TTC ACGAACTTTTCCGTG TTATGAATTACAAAA TERM 3625 3237158 - 3237132 - R 78 -6.6 -4.36862 | opp_overlap 3237129 3237132, overlap 3237129 ATATGAAATAAACAA GAAAAAGATCGC TTC ACGAACTTTTCC GTGTTATGAATTACA TERM 3626 3237217 - 3237188 - R 100 -9.5 -5.62552 | opp_overlap 3237188 AAAAAAAGCAAAAAA GATACAAAAATCT GATT AGAATTTTGTATC TTTTTTGCTCATCAT TERM 3627 3237188 - 3237217 + r 100 -9.5 -5.19212 | opp_overlap 3237188 AAAAAAAGCAAAAAA GATACAAAAATCT GATT AGAATTTTGTATC TTTTTTGCTCATCAT Cphy_2651 3238164 - 3237415 - | phosphoglycerate mutase 1 family protein TERM 3628 3238052 - 3238068 + g 75 -8.7 -3.63968 | TTCAGCGTGATGCCT GCAGAGG CCG CTTCTGC TTTCCCAGTTTCAGA Cphy_2652 3238503 - 3239213 + | AraC protein arabinose-binding/dimerisation Cphy_2653 3239229 - 3239465 + | AraC family transcriptional regulator TERM 3629 3239546 - 3239578 + T 100 -19.5 -3.99719 | opp_overlap 3239555, overlap 3239549 3239555 GGGTCTATTTTATTG CAAGAAAAAGTACAC AAA GTGTACTTTTTCTTG TTTCATATTCATTTT TERM 3630 3239549 - 3239575 + T 100 -15.4 -4.09455 | opp_overlap 3239555, overlap 3239546 3239555 TCTATTTTATTGCAA GAAAAAGTACAC AAA GTGTACTTTTTC TTGTTTCATATTCAT TERM 3631 3239569 - 3239555 - T 95 -8.6 -5.08601 | opp_overlap 3239555 3239549 3239546 TTATTGCAAGAAAAA GTACAC AAA GTGTAC TTTTTCTTGTTTCAT TERM 3632 3239555 - 3239569 + T 100 -8.6 -5.39905 | opp_overlap 3239555, overlap 3239549 3239546 TTATTGCAAGAAAAA GTACAC AAA GTGTAC TTTTTCTTGTTTCAT Cphy_2654 3241388 - 3239628 - | sugar ABC transporter substrate-binding protein TERM 3633 3241501 - 3241525 + r 100 -10.9 -4.3255 | CTTCTCAGTAGGATG TGTGAAAGAAT TTT GTTCTTTCACA TTTATTCCTTAACAC Cphy_2655 3242447 - 3241527 - | binding-protein-dependent transport systems inner membrane component TERM 3634 3241559 - 3241569 + g 70 -5.4 -4.52589 | CAAGCATCATTCCTT GTAC AAA GTAC TTTTGTATAAAAGGA TERM 3635 3242472 - 3242484 + r 89 -7.7 -4.97158 | opp_overlap 3242471 TCCTATTACCAAAGT CCACT TTC AGTGG TTTTCTTTGATATAA Cphy_2656 3243409 - 3242462 - | binding-protein-dependent transport systems inner membrane component TERM 3636 3243306 - 3243292 - G 74 -5 -4.74453 | GAATATACCGAAAAA TTACGT AAT ACGCAA CCGGTATCACCAGAA TERM 3637 3243836 - 3243867 + r 71 -8.8 -2.97925 | opp_overlap 3243836 CTATAAATTAATAAA GCACCAGATAATCA ATTT TGATTACCTGATGC TATATCATGTCAAAT TERM 3638 3243867 - 3243836 - R 100 -13.2 -4.42976 | opp_overlap 3243836 CTATAAATTAATAAA GCACCAGATAATCA ATTT TGATTACCTGATGC TATATCATGTCAAAT Cphy_2657 3244874 - 3243882 - | aldo/keto reductase TERM 3639 3245040 - 3245070 + H 88 -7 -5.28826 | opp_overlap 3245034, overlap 3245041 AGTCTAAACCTTAGA GTTTACTCAAAGTC AAG GGTTTTGAGTAAAG TTTTTTGTAAAGTTT TERM 3640 3245041 - 3245069 + H 87 -10.5 -3.75669 | opp_overlap 3245034, overlap 3245040 GTCTAAACCTTAGAG TTTACTCAAAGTC AAG GGTTTTGAGTAAA GTTTTTTGTAAAGTT Cphy_2658 3245520 - 3247439 + | protein of unknown function DUF303 acetylesterase putative TERM 3641 3248015 - 3247980 - T 100 -17.8 -4.62069 | opp_overlap 3247984, overlap 3247984 CTTCTAGTCTAAAAA CAAATAGCCTGGCACA TCAT TGTGACAGGCTATTTG CTACTAAAACGGAGA TERM 3642 3247984 - 3248011 + T 100 -12.8 -3.78775 | opp_overlap 3247984 3247980 TAGTCTAAAAACAAA TAGCCTGGCACA TCAT TGTGACAGGCTA TTTGCTACTAAAACG TERM 3643 3248011 - 3247984 - T 100 -12.8 -4.87389 | opp_overlap 3247984, overlap 3247980 TAGTCTAAAAACAAA TAGCCTGGCACA TCAT TGTGACAGGCTA TTTGCTACTAAAACG Cphy_2659 3249038 - 3248052 - | diaminopimelate dehydrogenase Cphy_2660 3249695 - 3250615 + | aldose 1-epimerase TERM 3644 3250673 - 3250712 + T 88 -11.5 -3.30007 | opp_overlap 3250676, overlap 3250676 TTCTAACCTTTAACT AGATGGGGCTGTCACAA CAAGCA TTGTGGCAGCCCCATGA TTATGAAGAAATCTT TERM 3645 3250709 - 3250676 - T 100 -16.1 -2.91199 | opp_overlap 3250673 3250676 TAACCTTTAACTAGA TGGGGCTGTCACAAC AAGC ATTGTGGCAGCCCCA TGATTATGAAGAAAT TERM 3646 3250676 - 3250709 + T 100 -17.6 -2.82742 | opp_overlap 3250676, overlap 3250673 TAACCTTTAACTAGA TGGGGCTGTCACAA CAAGCA TTGTGGCAGCCCCA TGATTATGAAGAAAT Cphy_2661 3251186 - 3250749 - | MarR family transcriptional regulator Cphy_2662 3251910 - 3251365 - | glutathione peroxidase Cphy_2663 3252485 - 3252012 - | glutathione peroxidase TERM 3647 3252608 - 3252659 + r 77 -8.4 -3.94409 | opp_overlap 3252613, overlap 3252607 3252635 TTATATTTGATTGCT TTAAATTAAATTGTTTGCAACCTA TATT TAGATTGTATCCAATTTAATTTAA TTTGTCAATACTCTA TERM 3648 3252726 - 3252702 - R 100 -10.8 -4.70659 | opp_overlap 3252702 3252698, overlap 3252686 TTCCACAGTTAAAAA GCCATGGAAA TACAC CTTCCATGGC TTAATTTCAATTTTA TERM 3649 3252702 - 3252726 + r 86 -10.1 -3.60899 | opp_overlap 3252686 3252702, overlap 3252698 TTCCACAGTTAAAAA GCCATGGAA ATACACC TTCCATGGC TTAATTTCAATTTTA Cphy_2664 3253260 - 3252754 - | CarD family transcriptional regulator TERM 3650 3253567 - 3253610 + r 93 -9 -4.76075 | opp_overlap 3253568 3253574, overlap 3253568 3253574 TAATGGCTTCGCAAC ATAAAAATCCCAGCTCCT CAATCACA AGGGGCTGGGATTTCTAA TTTTATTACTATGCT TERM 3651 3253609 - 3253568 - R 100 -13.9 -3.02043 | opp_overlap 3253568 3253567 3253574, overlap 3253574 AATGGCTTCGCAACA TAAAAATCCCAGCTCCTCA ATCA CAAGGGGCTGGGATTTCTA ATTTTATTACTATGC TERM 3652 3253568 - 3253609 + r 91 -12.5 -3.4456 | opp_overlap 3253568 3253574, overlap 3253567 3253574 AATGGCTTCGCAACA TAAAAATCCCAGCTCCT CAATCACA AGGGGCTGGGATTTCTA ATTTTATTACTATGC TERM 3653 3253603 - 3253574 - R 100 -10.7 -5.0916 | opp_overlap 3253568 3253567 3253574, overlap 3253568 TTCGCAACATAAAAA TCCCAGCTCCTCA ATCA CAAGGGGCTGGGA TTTCTAATTTTATTA TERM 3654 3253574 - 3253603 + r 100 -11.5 -4.2649 | opp_overlap 3253574 3253568, overlap 3253568 3253567 TTCGCAACATAAAAA TCCCAGCTCCT CAATCACA AGGGGCTGGGA TTTCTAATTTTATTA Cphy_2665 3255541 - 3253787 - | threonyl-tRNA synthetase TERM 3655 3255627 - 3255587 - R 83 -7 -4.88258 | gap 2, opp_overlap 3255601 AAAAGCATAAGAAAA GCACCCAAAAGAGCATGGTA ATA TACCA--CTCTTAAGGGTGC AAATAATCCTATTGC Cphy_2666 3256547 - 3255879 - | periplasmic binding protein TERM 3656 3256895 - 3256860 - H 80 -7.2 -4.72863 | gap 1, opp_overlap 3256866, overlap 3256862 TTAAATAAAGTAAAA TACATATGACTATTCTA GTA TA-AATAGTCATATGTG AATATAGGAGGTTTT TERM 3657 3256893 - 3256862 - H 83 -9.8 -3.95442 | gap 1, opp_overlap 3256866, overlap 3256860 AAATAAAGTAAAATA CATATGACTATTCTA GTA TA-AATAGTCATATG TGAATATAGGAGGTT Cphy_2667 3256913 - 3257491 + | TetR family transcriptional regulator Cphy_2668 3257504 - 3257761 + | hypothetical protein TERM 3658 3257869 - 3257825 - T 95 -12.4 -3.66803 | opp_overlap 3257821 3257819 3257826 3257828 3257834, overlap 3257826 3257828 TCGCAATATTGTAAA CGACGGGCATAAAACTAT TTTTATATT ACAGTTTTATGCCCGTCT ACTATCATTTCTATT TERM 3659 3257868 - 3257826 - T 100 -15.9 -2.7976 | opp_overlap 3257826 3257821 3257819 3257828 3257834, overlap 3257825 3257828 CGCAATATTGTAAAC GACGGGCATAAAACTAT TTTTATATT ACAGTTTTATGCCCGTC TACTATCATTTCTAT TERM 3660 3257826 - 3257868 + T 100 -13.7 -2.75 | opp_overlap 3257825 3257826 3257828, overlap 3257821 3257819 3257828 3257834 CGCAATATTGTAAAC GACGGGCATAAAACTAT TTTTATATT ACAGTTTTATGCCCGTC TACTATCATTTCTAT TERM 3661 3257866 - 3257828 - T 100 -12.7 -2.94299 | opp_overlap 3257828 3257826 3257821 3257819 3257834, overlap 3257826 3257825 CAATATTGTAAACGA CGGGCATAAAACTAT TTTTATATT ACAGTTTTATGCCCG TCTACTATCATTTCT TERM 3662 3257828 - 3257866 + T 81 -10.5 -2.91126 | opp_overlap 3257826 3257825 3257828, overlap 3257826 3257821 3257819 3257834 CAATATTGTAAACGA CGGGCATAAAACTAT TTTTATATT ACAGTTTTATGCCCG TCTACTATCATTTCT Cphy_2669 3258890 - 3258027 - | extracellular solute-binding protein TERM 3663 3258906 - 3258921 + r 82 -6.1 -5.1244 | AAACTCCTCTTTTCT GGTGC TTTTTT GCACC TTTTTATATTGATAG Cphy_2670 3259742 - 3258987 - | ABC transporter related Cphy_2671 3260424 - 3259747 - | polar amino acid ABC transporter, inner membrane subunit Cphy_2672 3261064 - 3260384 - | polar amino acid ABC transporter, inner membrane subunit TERM 3664 3260872 - 3260858 - GH 100 -2.8 -6.15717 | opp_overlap 3260858, overlap 3260860 GAAATATAAAAAAAA TAGTTG AAT CAACAA TGGTGTATTTCTAGA TERM 3665 3260870 - 3260860 - GH 73 -5.4 -4.67703 | opp_overlap 3260858, overlap 3260858 AATATAAAAAAAATA GTTG AAT CAAC AATGGTGTATTTCTA TERM 3666 3261500 - 3261474 - H 100 -8.8 -5.64274 | opp_overlap 3261474 3261477 TTACTCATAAAAAAA GAAACAGGTACA CTC TTTACCTGCTTC TTTCCTCATGATGAT Cphy_2673 3262256 - 3263230 + | ABC transporter related Cphy_2674 3263227 - 3264030 + | hypothetical protein Cphy_2675 3264166 - 3264915 + | hypothetical protein TERM 3667 3265227 - 3265217 - T 71 -8.2 -3.32611 | overlap 3265216 3265218 CAAAACATAATAAAT GCGG AGT CCGC CCGAATTATCACCTC Cphy_2676 3266551 - 3265535 - | hypothetical protein Cphy_2677 3267955 - 3266561 - | radical SAM domain-containing protein Cphy_2678 3268469 - 3269269 + | ribonuclease BN TERM 3668 3269314 - 3269279 - T 80 -6 -5.08824 | opp_overlap 3269279 TTTTGACGCAAAAAA TCCCCGGAATTCCCAT AAAT AGGGTTTTTCCGGGGA TTTAGATTTTATTAT Cphy_2679 3270271 - 3269339 - | translation elongation factor Ts TERM 3669 3270425 - 3270391 - R 93 -9.4 -4.7078 | opp_overlap 3270391 TGAATTACTTAAAAA TGCCTCAGCCTAAC ATTTGCG GTCAGACTGAAGCA TTTATTCACATCATT Cphy_2680 3271225 - 3270485 - | ribosomal protein S2 TERM 3670 3271445 - 3271424 - R 71 -3.1 -5.28826 | opp_overlap 3271425 3271427, overlap 3271425 AAATTCCATAAAAAA TGATATAAA AAGT TTTATATCT GTCTAAAAAGGAATT Cphy_2681 3272234 - 3271467 - | hypothetical protein TERM 3671 3271959 - 3271977 + g 70 -2.5 -5.09225 | gap 1 TTGCGTGGCATTTGC CGAATGAT TAGC ATC-TTCG TTTTTTCCATCAGGT TERM 3672 3272250 - 3272218 - G 100 -14.3 -4.13246 | opp_overlap 3272221 3272227, overlap 3272221 3272227 TATTCTATACATAAA CAAGAAAAAGTACGC ATT GCGAACTTTTCCTTG TCATAAATAATGATA TERM 3673 3272247 - 3272221 - G 86 -10.2 -4.18674 | opp_overlap 3272221 3272227, overlap 3272218 3272227 TCTATACATAAACAA GAAAAAGTACGC ATT GCGAACTTTTCC TTGTCATAAATAATG TERM 3674 3272241 - 3272227 - G 86 -5.6 -5.42164 | opp_overlap 3272221 3272227, overlap 3272221 3272218 CATAAACAAGAAAAA GTACGC ATT GCGAAC TTTTCCTTGTCATAA TERM 3675 3272227 - 3272241 + g 70 -5.6 -4.51174 | opp_overlap 3272227 3272221 3272218, overlap 3272221 CATAAACAAGAAAAA GTACGC ATT GCGAAC TTTTCCTTGTCATAA Cphy_2682 3273069 - 3272356 - | hypothetical protein Cphy_2683 3273411 - 3273088 - | hypothetical protein Cphy_2684 3275037 - 3273439 - | hypothetical protein Cphy_2685 3275883 - 3275119 - | RNA polymerase, sigma 28 subunit, FliA/WhiG Cphy_2686 3276238 - 3275915 - | hypothetical protein Cphy_2687 3276776 - 3276291 - | hypothetical protein Cphy_2688 3277401 - 3276784 - | CheC, inhibitor of MCP methylation TERM 3676 3277440 - 3277474 + r 100 -13.1 -5.00196 | gap 1, opp_overlap 3277439 3277440, overlap 3277440 3277441 ACGCCTTTCTATAAC G-TGAGCAGTTTGTGC TAAC GCACAAATTGCTCAAC TTTTGTTATTTCACA TERM 3677 3277440 - 3277473 + r 100 -13.3 -3.59033 | opp_overlap 3277439 3277440, overlap 3277440 3277441 ACGCCTTTCTATAAC GTGAGCAGTTTGTGC TAAC GCACAAATTGCTCAA CTTTTGTTATTTCAC TERM 3678 3277473 - 3277440 - R 82 -11.1 -2.57211 | opp_overlap 3277440 3277440 3277441, overlap 3277439 ACGCCTTTCTATAAC GTGAGCAGTTTGTGC TAAC GCACAAATTGCTCAA CTTTTGTTATTTCAC TERM 3679 3277441 - 3277472 + r 100 -16.8 -2.74335 | opp_overlap 3277440 3277439, overlap 3277440 3277440 CGCCTTTCTATAACG TGAGCAGTTTGTGC TAAC GCACAAATTGCTCA ACTTTTGTTATTTCA Cphy_2689 3277947 - 3277480 - | CheW protein Cphy_2690 3280053 - 3277960 - | CheA signal transduction histidine kinase Cphy_2691 3281173 - 3280055 - | response regulator receiver modulated CheB methylesterase Cphy_2692 3282049 - 3281288 - | type IV pilus assembly PilZ TERM 3680 3281642 - 3281654 + g 88 -5.5 -5.68438 | opp_overlap 3281642 TGATTTATTAATGAA GCTGT TTT GCAGC TTTTTTATTTCATCC Cphy_2693 3282957 - 3282076 - | cobyrinic acid ac-diamide synthase Cphy_2694 3284172 - 3282958 - | GTP-binding signal recognition particle TERM 3681 3283951 - 3283921 - G 74 -7.7 -3.84825 | opp_overlap 3283921 3283917 TTGATTTACATGAAA CCCTCGATTAAAC GAGCT ATTTAATTGAGGG TTGATTCTTATGTTA TERM 3682 3283921 - 3283951 + g 78 -9.2 -3.62002 | opp_overlap 3283921, overlap 3283917 TTGATTTACATGAAA CCCTCGATTAAA CGAGCTA TTTAATTGAGGG TTGATTCTTATGTTA Cphy_2695 3286205 - 3284172 - | flagellar biosynthesis protein FlhA TERM 3683 3285565 - 3285578 + g 77 -8.1 -3.84514 | CTAAATGCCTCTCCC GCAGG TAAT CCTGC TTTCATCATTCCCAT TERM 3684 3285894 - 3285884 - G 73 -3.2 -5.09245 | opp_overlap 3285893, overlap 3285892 TTAAAATTATAAAAA CGAT TAC ACCG ATGATAACATCGTCC Cphy_2696 3287350 - 3286229 - | flagellar biosynthetic protein FlhB TERM 3685 3286530 - 3286545 + g 84 -3.3 -5.74086 | TGCATCATACGTCTT TGAGA AGCTTG TCTCA TTTTTTGTTTGATTT TERM 3686 3286888 - 3286908 + g 83 -6.9 -4.75309 | opp_overlap 3286893, overlap 3286892 TGGAAAGCATCTTTT TAAAACCAC TCA GTGGATTTA TTTTATTGAATTTAG TERM 3687 3286903 - 3286893 - G 70 -6.8 -4.08945 | opp_overlap 3286892 3286888 AGCATCTTTTTAAAA CCAC TCA GTGG ATTTATTTTATTGAA Cphy_2697 3288140 - 3287373 - | flagellar biosynthetic protein FliR Cphy_2698 3288421 - 3288152 - | flagellar biosynthetic protein FliQ Cphy_2699 3289282 - 3288437 - | flagellar biosynthetic protein FliP Cphy_2700 3289711 - 3289289 - | hypothetical protein Cphy_2701 3290073 - 3289711 - | response regulator receiver protein TERM 3688 3290110 - 3290159 + r 85 -9.1 -4.03811 | gap 3, opp_overlap 3290118 3290129, overlap 3290113 TGATCTGTAATAGCC GTA-TACAATTATATAGCAAGCCG TATTC CGGC--GCTATATAATTGTATTAC TTATTTAATAATATC TERM 3689 3290113 - 3290155 + r 89 -11 -3.63839 | gap 2, opp_overlap 3290118 3290129, overlap 3290110 TCTGTAATAGCCGTA TACAATTATATAGCAAGCCG TATTC CGGC--GCTATATAATTGTA TTACTTATTTAATAA Cphy_2702 3291365 - 3290160 - | CheC, inhibitor of MCP methylation / FliN fusion protein TERM 3690 3291172 - 3291182 + g 72 -4 -4.98531 | CATACTTTAGGAGTT GTAA TTG TTAC TTTTTGGTTTACCAG Cphy_2703 3292350 - 3291373 - | flagellar motor switch protein FliM Cphy_2704 3292903 - 3292382 - | hypothetical protein Cphy_2705 3293787 - 3292960 - | OmpA/MotB domain-containing protein TERM 3691 3293742 - 3293756 + g 74 -4.2 -5.05116 | overlap 3293735 3293744 ACAATGGTGCTCCTG CTGAAG CCT CTTCCG TTTTCTTCTTTCTAG Cphy_2706 3294568 - 3293768 - | MotA/TolQ/ExbB proton channel TERM 3692 3294660 - 3294672 + r 100 -7.7 -5.43866 | ATTTTTATATCTTCA GCACT TAT AGTGC TTTTTTTCAAAATTA Cphy_2707 3294906 - 3294700 - | flagellar FlbD family protein TERM 3693 3295015 - 3295044 + r 72 -7.2 -3.8377 | gap 1 CTCAGTAGGCTGGAA GTTTGTGCC-GAG GATTA CGCAGGCACAAAC TTTCGTGTAAAGCTT TERM 3694 3295062 - 3295100 + r 71 -7.5 -3.43081 | overlap 3295060 3295065 TCGTGTAAAGCTTTA GAATTTCTTAGGCGGCG TCTTT TGGTGCCTTAGAAATTC TCTTTACACTTATCT Cphy_2708 3296549 - 3295110 - | hypothetical protein Cphy_2709 3297037 - 3296639 - | flagellar operon protein Cphy_2710 3298084 - 3297257 - | flagellar hook capping protein TERM 3695 3297984 - 3298008 + g 73 -3.5 -5.18297 | overlap 3297989 AAGAATGCGTCTTTA CCAAGCTCGGA AGA TCCCAGTTTCG TTTTGTTTGTTGTTG Cphy_2711 3299499 - 3298102 - | flagellar hook-length control protein TERM 3696 3299557 - 3299570 + r 79 -6.7 -4.55128 | TAAGCTTTAGCTCAA CAAGC CGTT GCTTG TTTTGCTTTCACCAT Cphy_2712 3300516 - 3299731 - | hypothetical protein Cphy_2713 3300971 - 3300516 - | flagellar export protein FliJ Cphy_2714 3302375 - 3301071 - | flagellar protein export ATPase FliI TERM 3697 3302563 - 3302601 + r 84 -11.1 -3.0644 | opp_overlap 3302566, overlap 3302566 CCGTGTGAAGTTTTA GAATTTCTTAGGCGGCG TCACT TGGCGCCTTAGAAATTC TCTTCACACTTACCT Cphy_2715 3303464 - 3302592 - | hypothetical protein TERM 3698 3303118 - 3303132 + g 81 -8.6 -4.0162 | TTTATCTTATCTGCA TCAAGC TTT GCTTGA TTTATCATATGAGCA Cphy_2716 3304476 - 3303457 - | flagellar motor switch protein FliG Cphy_2717 3306087 - 3304492 - | flagellar M-ring protein FliF Cphy_2718 3306425 - 3306105 - | flagellar hook-basal body complex protein FliE Cphy_2719 3306898 - 3306446 - | flagellar basal-body rod protein FlgC TERM 3699 3306797 - 3306809 + g 72 -7.7 -3.68261 | ACCATTTTCATCTCT CGTAG TTT CTACG TTTGCAATATTCTGA Cphy_2720 3307301 - 3306915 - | flagellar basal-body rod protein FlgB TERM 3700 3307862 - 3307889 + r 86 -10 -3.68962 | opp_overlap 3307862, overlap 3307856 TAATACTCAAAAAAA CAGACTCATAAG TTGC CTTATAAGTCTG TTATGATTTATTGCA TERM 3701 3307889 - 3307862 - R 100 -12.2 -5.52909 | opp_overlap 3307862 3307856 TAATACTCAAAAAAA CAGACTCATAAG TTGC CTTATAAGTCTG TTATGATTTATTGCA Cphy_2721 3308683 - 3307916 - | transcriptional repressor CodY TERM 3702 3308905 - 3308875 - R 86 -4.2 -5.75342 | opp_overlap 3308875 CTTTTTGAAAAAAAA TGAGATTGTA GCTAATTCTCT TACAATCTCA TTATAAACCATTTTG Cphy_2722 3311083 - 3309011 - | DNA topoisomerase I TERM 3703 3310882 - 3310903 + g 73 -7.3 -4.08945 | overlap 3310874 TTTTTACTTCCTTAC GGAGTTTTG CTAG CAAATCTCC TTTTCCACGAATCGT TERM 3704 3311584 - 3311542 - R 76 -3.4 -5.42514 | TGATAAAGCAAAAAA GGATAAAGAGAAAGGTATAA TTT CTTTTCCCCACTCTTTACCC CGAACAATCTTAATA TERM 3705 3311874 - 3311843 - R 76 -5.4 -5.08824 | gap 1, opp_overlap 3311843 CGTTTAGGCAAAAAA GGGTAAAGAGAAA GATTCAA TTTCT-TTTACCC CTTGGTTACATTATA Cphy_2723 3313189 - 3312080 - | DNA protecting protein DprA Cphy_2724 3314728 - 3313190 - | Mg chelatase, subunit ChlI TERM 3706 3315015 - 3314988 - R 100 -7.8 -5.50499 | opp_overlap 3314988 CTATACCTAAAAAAA CCTCCAAATG TTTCTATC CACTTGGAGG TTCTAGTCATTATTA Cphy_2725 3315496 - 3315035 - | ATP-cone domain-containing protein TERM 3707 3315696 - 3315709 + G 76 -6.7 -4.42464 | TAAATTGTAGAGATT GCCTA CGAT TAGGC TTTGTTTGCGACATT Cphy_2726 3315647 - 3315907 + | YlmC/YmxH family sporulation protein TERM 3708 3316692 - 3316705 + G 75 -5.3 -4.72201 | AAAAGATGTGGCCTC TTCCT GTTG AGGAA TTGTTTTTTGTCGGA Cphy_2727 3316130 - 3317332 + | DNA-directed DNA polymerase TERM 3709 3317477 - 3317467 - T 81 -3.2 -5.80364 | ATCGGAATAAAAAAA CTGC ATG GCAA ACAGACGACTGGAGA Cphy_2728 3318878 - 3317574 - | transposase TERM 3710 3318984 - 3318950 - R 75 -9.6 -2.80958 | opp_overlap 3318933 3318949 3318950 3318954, overlap 3318947 3318954 GAGTTTAAGAAAGAG TAAATTCCATATTTAA TAT TTAAAAATGGAATCTA GTTTTTCAATCAACA TERM 3711 3318980 - 3318954 - R 79 -8.2 -4.07859 | opp_overlap 3318933 3318950 3318949 3318954, overlap 3318950 3318947 TTAAGAAAGAGTAAA TTCCATATTTAA TAT TTAAAAATGGAA TCTAGTTTTTCAATC TERM 3712 3318954 - 3318980 + r 71 -8.2 -3.19102 | opp_overlap 3318954 3318950 3318947, overlap 3318933 3318950 3318949 TTAAGAAAGAGTAAA TTCCATATTTAA TAT TTAAAAATGGAA TCTAGTTTTTCAATC TERM 3713 3319051 - 3319080 + r 84 -3.6 -5.82172 | opp_overlap 3319051 AGGTAAATAAAAAAA CATCTTTGAACG TTTTTT CATTCTAAGATG TTTTTTTATCTTCAT TERM 3714 3319080 - 3319051 - R 100 -5.8 -5.96894 | opp_overlap 3319051 AGGTAAATAAAAAAA CATCTTTGAACG TTTTTT CATTCTAAGATG TTTTTTTATCTTCAT Cphy_2729 3320017 - 3319172 - | xylose isomerase domain-containing protein TERM 3715 3320033 - 3320046 + r 100 -9.5 -4.94962 | ATTAACCTCTATTCT GGCGC TTTA GCGCC TTTTATTTAAATTAT TERM 3716 3320127 - 3320165 + r 84 -11.1 -3.06315 | opp_overlap 3320130, overlap 3320130 CCGTGTGAATTTTTA GAATTTCTTAGGCGGCG TCTTT TGGCGCCTTAGAAATTC TCTTCCCACTCTTCC Cphy_2730 3320980 - 3320156 - | polysaccharide deacetylase TERM 3717 3321118 - 3321092 - R 74 -8.7 -3.2624 | opp_overlap 3321097, overlap 3321088 3321085 3321084 3321096 CAAAGAACCTAGGAA GGAACCCTACC CAAAT GGTTAGGTTCC TCGTCGCTTGATTCT Cphy_2731 3322029 - 3321178 - | binding-protein-dependent transport systems inner membrane component Cphy_2732 3322992 - 3322042 - | binding-protein-dependent transport systems inner membrane component TERM 3718 3322820 - 3322807 - G 73 -6.7 -4.2528 | CTTTAATCCAACAAA CACAG GTTC CTGTG CCATCTTATAATCAT Cphy_2733 3324745 - 3323144 - | extracellular solute-binding protein Cphy_2734 3325192 - 3327486 + | AraC family transcriptional regulator TERM 3719 3327518 - 3327543 + F 95 -8.5 -5.28176 | opp_overlap 3327513 3327511 3327518 ACCATAACTATAAAA GAATTAAATCA AGCT TGGTTTAATTC TTTTTTATAAATAAG TERM 3720 3327543 - 3327518 - f 76 -6.3 -4.59069 | opp_overlap 3327518, overlap 3327513 3327511 ACCATAACTATAAAA GAATTAAATCA AGCT TGGTTTAATTC TTTTTTATAAATAAG Cphy_2735 3327576 - 3328295 + | GDSL family lipase TERM 3721 3328505 - 3328455 - T 100 -9.4 -5.0925 | gap 1, opp_overlap 3328437 3328455 TTTTAAAATTAAAAA GCTTTTTGTTACTCTATCCTATT TAAACG AATAGGAC-GAATGACAAAAAGC TTTTTATGCATATAG TERM 3722 3328455 - 3328505 + T 87 -7.9 -4.89852 | gap 1, opp_overlap 3328455, overlap 3328437 TTTTAAAATTAAAAA GCTTTTTGTTACTCTATCCTATTT AAAC GAATAGGAC-GAATGACAAAAAGC TTTTTATGCATATAG Cphy_2736 3330104 - 3328548 - | glycoside hydrolase family protein TERM 3723 3330065 - 3330079 + g 80 -6.4 -4.80882 | opp_overlap 3330065 CTATTAATTCAATCA CTGCTG TTC TAGCAG TTTTTAGTATCACAT Cphy_2737 3331078 - 3330194 - | glycosy hydrolase family protein TERM 3724 3331185 - 3331146 - R 89 -7.8 -5.01732 | overlap 3331147 3331148 AACTTTTCTAAAAAA GTGCCTGCGATTATAGAC AACT GCCTAAAACCGCAGGCGT TACAAAGAATATTGT TERM 3725 3331184 - 3331147 - R 93 -11.3 -3.60316 | overlap 3331146 3331148 ACTTTTCTAAAAAAG TGCCTGCGATTATAGAC AACT GCCTAAAACCGCAGGCG TTACAAAGAATATTG TERM 3726 3331183 - 3331148 - R 100 -14.8 -2.75708 | overlap 3331147 3331146 CTTTTCTAAAAAAGT GCCTGCGATTATAGAC AACT GCCTAAAACCGCAGGC GTTACAAAGAATATT Cphy_2738 3332038 - 3331208 - | 5-keto-4-deoxyuronate isomerase TERM 3727 3332310 - 3332277 - R 81 -10.6 -2.9155 | gap 1, opp_overlap 3332276 3332275, overlap 3332272 3332279 TTTCTGAATATCACA TATGGGTATTGT-TC TTATT GACACAATACCCATA GCTATTAGATTATTT TERM 3728 3332308 - 3332279 - R 72 -8.8 -3.00923 | gap 1, opp_overlap 3332276 3332275, overlap 3332277 3332272 TCTGAATATCACATA TGGGTATTGT-TC TTATT GACACAATACCCA TAGCTATTAGATTAT Cphy_2739 3333360 - 3332329 - | ribokinase-like domain-containing protein Cphy_2740 3335127 - 3333646 - | Altronate dehydratase TERM 3729 3335214 - 3335177 - R 83 -8 -4.27117 | gap 1, opp_overlap 3335180 3335185, overlap 3335180 3335185 GGGCGATAACACAAA TTAGGA-AAGTGAATTG TTTTG CAATTCACTTGTCCTTA GATTATAGATTTTCC TERM 3730 3335180 - 3335211 + r 83 -10.4 -3.25361 | gap 1, opp_overlap 3335180 3335177 3335185, overlap 3335185 CGATAACACAAATTA GGA-AAGTGAATTGT TTT GCAATTCACTTGTCC TTAGATTATAGATTT TERM 3731 3335211 - 3335180 - R 76 -9.7 -3.13369 | gap 1, opp_overlap 3335180 3335185, overlap 3335177 3335185 CGATAACACAAATTA GGA-AAGTGAATTG TTTTG CAATTCACTTGTCC TTAGATTATAGATTT TERM 3732 3335185 - 3335205 + r 78 -9.1 -3.54511 | opp_overlap 3335185 3335180 3335177, overlap 3335180 ACACAAATTAGGAAA GTGAATTGT TTT GCAATTCAC TTGTCCTTAGATTAT TERM 3733 3335205 - 3335185 - R 77 -8.4 -3.918 | opp_overlap 3335180 3335185, overlap 3335180 3335177 ACACAAATTAGGAAA GTGAATTG TTTTG CAATTCAC TTGTCCTTAGATTAT Cphy_2741 3336674 - 3335217 - | altronate oxidoreductase TERM 3734 3336773 - 3336787 + H 73 -4.4 -5.00196 | opp_overlap 3336775 ACATTTCTTACATAG TATTTT CCA AAAATA TTTTATTATTTAGAA TERM 3735 3337041 - 3337004 - H 71 -8.7 -2.90709 | gap 1, opp_overlap 3337004, overlap 3336998 3337003 ATAATATGATTAAAC TGTAAGCGCTTACA-ATT GAA AATATAAAAGCGCTTACA TAACTTCTCTAATAA Cphy_2742 3337192 - 3338193 + | LacI family transcription regulator Cphy_2743 3338265 - 3339665 + | glucuronate isomerase TERM 3736 3339711 - 3339756 + T 100 -13.7 -4.84146 | gap 1, opp_overlap 3339716, overlap 3339716 TATTCTATACAGATA AAAAATACATCTGCTTTCCGTT ACT AATGGAA-GCAGATGTATTTTC TTTGTTTTCTATCGT TERM 3737 3339716 - 3339751 + T 100 -13.6 -5.28281 | gap 1, opp_overlap 3339716, overlap 3339711 TATACAGATAAAAAA TACATCTGCTTTCCGTT ACT AATGGAA-GCAGATGTA TTTTCTTTGTTTTCT TERM 3738 3339751 - 3339716 - T 100 -11.4 -5.4492 | gap 1, opp_overlap 3339716 3339711 TATACAGATAAAAAA TACATCTGCTTTCCGTT ACT AATGG-AAGCAGATGTA TTTTCTTTGTTTTCT Cphy_2744 3340653 - 3339865 - | hypothetical protein TERM 3739 3340581 - 3340599 + g 73 -3.2 -5.12068 | opp_overlap 3340581, overlap 3340582 ATTCGGTATTATATA CTAAATGA ACC TCATTTAC TTTTTCTTCACTCTG Cphy_2745 3341185 - 3341541 + | hypothetical protein TERM 3740 3341585 - 3341533 - f 77 -10.1 -2.55818 | opp_overlap 3341541 AATAATGTTAATTTA GTTACTTAGTTACTTTGGAATGATG ATT CGTCATTCCGAAGTAACTAAATTAA AAGAAAAGGTAGGTT TERM 3741 3341541 - 3341577 + F 100 -18.3 -2.52464 | opp_overlap 3341533 TAATTTAGTTACTTA GTTACTTTGGAATGATG ATT CGTCATTCCGAAGTAAC TAAATTAAAAGAAAA Cphy_2746 3341607 - 3342143 + | hypothetical protein Cphy_2747 3342200 - 3342733 + | hypothetical protein Cphy_2749 3344792 - 3345199 + | hypothetical protein Cphy_2750 3345346 - 3346269 + | aspartate carbamoyltransferase Cphy_2751 3346340 - 3346771 + | aspartate carbamoyltransferase regulatory subunit TERM 3742 3346902 - 3346877 - T 95 -10.6 -4.7254 | opp_overlap 3346877 ACGTTCTATTAAAAA TAGAAGAGCT TCCATT AGCTCTTCTA TTTTTGTATCGTTTT TERM 3743 3346877 - 3346902 + T 100 -10.6 -5.07941 | opp_overlap 3346877 ACGTTCTATTAAAAA TAGAAGAGCT TCCATT AGCTCTTCTA TTTTTGTATCGTTTT Cphy_2752 3348664 - 3346994 - | formate--tetrahydrofolate ligase TERM 3744 3348890 - 3348935 + r 86 -9.9 -3.59936 | opp_overlap 3348890, overlap 3348886 CAAAACGCCAAAAAA CTGTGTTAAGCCTTTTTTTGT TTTC ACAAAAAACAGCCTAGCACAG TTCCTTCTTCCTTTG TERM 3745 3348935 - 3348890 - R 100 -12.1 -5.15117 | opp_overlap 3348890 3348886 CAAAACGCCAAAAAA CTGTGTTAAGCCTTTTTTTGT TTTC ACAAAAAACAGCCTAGCACAG TTCCTTCTTCCTTTG Cphy_2753 3350082 - 3349219 - | RimK domain-containing protein ATP-grasp Cphy_2754 3350975 - 3350076 - | alpha-L-glutamate ligase Cphy_2755 3351404 - 3352327 + | hypothetical protein TERM 3746 3352413 - 3352424 + F 71 -3 -5.2894 | opp_overlap 3352413 AATTTGTTAAAGGAA TCAT CGCA ATGA TTTTCTTTTATATTT Cphy_2756 3352638 - 3353135 + | GCN5-related N-acetyltransferase TERM 3747 3353324 - 3353285 - T 100 -20.4 -4.18018 | opp_overlap 3353291, overlap 3353287 3353291 TTTTCTTACTCAAAA CAGAAAGTAAGCAGTATG CATG CATACTGCTTACTTTCTA CCCATTACTACTTAC TERM 3748 3353322 - 3353287 - T 100 -20.8 -3.69216 | opp_overlap 3353291, overlap 3353285 3353291 TTCTTACTCAAAACA GAAAGTAAGCAGTATG CATG CATACTGCTTACTTTC TACCCATTACTACTT TERM 3749 3353291 - 3353318 + T 100 -15.8 -3.89881 | opp_overlap 3353287 3353285 3353291 TACTCAAAACAGAAA GTAAGCAGTATG CATG CATACTGCTTAC TTTCTACCCATTACT TERM 3750 3353318 - 3353291 - T 100 -15.8 -4.46775 | opp_overlap 3353291, overlap 3353287 3353285 TACTCAAAACAGAAA GTAAGCAGTATG CATG CATACTGCTTAC TTTCTACCCATTACT Cphy_2757 3356235 - 3353395 - | cell divisionFtsK/SpoIIIE TERM 3751 3356363 - 3356332 - R 100 -9.4 -5.27779 | opp_overlap 3356331 3356332 CCTAATACCAAAAAA CAATAGACCGCACG AATA CGAGCGCCCTATTG CTTTTCCTAGGATTG Cphy_2758 3357237 - 3356416 - | undecaprenyl pyrophosphate phosphatase TERM 3752 3357406 - 3357380 - R 100 -11 -4.84363 | opp_overlap 3357380 TGAAACCATTAAAAA CTGACAATAAGA TTT CCCTATTGTCAG TCCATTTCATCTATC Cphy_2759 3358367 - 3357417 - | peptidase S14 ClpP TERM 3753 3358139 - 3358163 + g 78 -3.6 -5.30686 | TCTTAATATTACCCT TCACCTGC TTATCCCCT GTAGGTGA TTTTTTCTGCGTATT TERM 3754 3358727 - 3358672 - R 100 -10.8 -5.75538 | gap 1 CTCAAAAAATAAAAA TAGCTCTACACCTAGTATGA-GCAAAA AAA TTTCACTTCACACTTGATATAGAGCTA AACTTTTAAATAAAT Cphy_2760 3360187 - 3358910 - | O-acetylhomoserine/O-acetylserine sulfhydrylase Cphy_2761 3361723 - 3360353 - | peptidase M16 domain-containing protein TERM 3755 3361001 - 3361012 + g 70 -3 -5.16841 | TGGAATATCATCATG TTTC TTTT GAAA TTTTTCTTCATATGG Cphy_2762 3362767 - 3361898 - | sugar-specific permease EIIA TERM 3756 3362985 - 3362932 - R 100 -17.1 -4.27441 | opp_overlap 3362940 3362947, overlap 3362938 3362940 3362947 AGGACGATGAATAAA GCAGAAGATAGAAAAGAGGAATCAG CAAG CTGATTCCTCTTTTCTATTCTCTAT GCATAATGCAATTTA TERM 3757 3362979 - 3362938 - R 100 -19.1 -3.69564 | opp_overlap 3362940 3362947, overlap 3362932 3362940 3362947 ATGAATAAAGCAGAA GATAGAAAAGAGGAATCAG CAAG CTGATTCCTCTTTTCTATT CTCTATGCATAATGC TERM 3758 3362977 - 3362940 - R 100 -21.7 -3.41504 | opp_overlap 3362940 3362947, overlap 3362938 3362932 3362947 GAATAAAGCAGAAGA TAGAAAAGAGGAATCAG CAAG CTGATTCCTCTTTTCTA TTCTCTATGCATAAT TERM 3759 3362940 - 3362977 + r 100 -21.7 -3.60792 | opp_overlap 3362940 3362938 3362932 3362947, overlap 3362947 GAATAAAGCAGAAGA TAGAAAAGAGGAATCAG CAAG CTGATTCCTCTTTTCTA TTCTCTATGCATAAT TERM 3760 3362970 - 3362947 - R 100 -14 -4.71223 | opp_overlap 3362940 3362947, overlap 3362940 3362938 3362932 GCAGAAGATAGAAAA GAGGAATCAG CAAG CTGATTCCTC TTTTCTATTCTCTAT TERM 3761 3362947 - 3362970 + r 100 -14 -4.77867 | opp_overlap 3362947 3362940 3362938 3362932, overlap 3362940 GCAGAAGATAGAAAA GAGGAATCAG CAAG CTGATTCCTC TTTTCTATTCTCTAT Cphy_2763 3365094 - 3362998 - | polynucleotide phosphorylase/polyadenylase TERM 3762 3365238 - 3365208 - R 74 -6.3 -4.3739 | gap 1, opp_overlap 3365203, overlap 3365195 3365209 3365234 CACCTTCTGATAAAA GGGCAACTTTGTGT GCTA ACACAAA-TTGCCG TGTGAAATTTTTTTC TERM 3763 3365237 - 3365209 - R 78 -9.8 -3.22113 | gap 1, opp_overlap 3365203, overlap 3365208 3365234 ACCTTCTGATAAAAG GGCAACTTTGTGT GCTA ACACAAA-TTGCC GTGTGAAATTTTTTT Cphy_2764 3366978 - 3365704 - | FolC bifunctional protein Cphy_2765 3367779 - 3367216 - | hypothetical protein TERM 3764 3367749 - 3367759 + g 74 -4 -5.16206 | CTTTTTTTAAATCTT TGTT TTT AACA TTTTTCTCTTGATTT TERM 3765 3367869 - 3367892 + r 74 -6.8 -4.25283 | opp_overlap 3367860 CACAAAGCGGCCAAC CATGCATTCT AAAT AGAATTCATG TTTTGCTACAACAAT Cphy_2766 3369376 - 3368015 - | MATE efflux family protein TERM 3766 3369327 - 3369343 + g 75 -7.3 -4.28323 | ATAGCTATCATTGCG GCCTTTT TCA GAAAGGC TTTATCTTGCTTCAT TERM 3767 3369618 - 3369595 - R 100 -14 -5.71712 | CCCTATAGAAAAAAA GAGACTGTAC TAAA GTACAGTCTC CACATTACAAGCTCT Cphy_2767 3369899 - 3369633 - | ribosomal protein S15 Cphy_2768 3371748 - 3370084 - | Na/Pi-cotransporter II-related protein TERM 3768 3370192 - 3370204 + g 74 -4.8 -4.72272 | AATCATTCCTGTTTC CGCA CTACA TGCG TTTTTAGTAAGACGA TERM 3769 3371031 - 3371045 + g 77 -2.8 -5.52384 | ACAGGTGGATCCAGG CAGC TCTTTTC GCTG TTTTTTTACTACCGA TERM 3770 3372005 - 3371963 - R 80 -7.8 -4.32402 | opp_overlap 3371968, overlap 3371960 TCCTAATTAAAATAA TCAAACAAGTTAAGGTACAC TCT GTGATCTTTATCTTGTTTGA ACAAATTGAACAATA TERM 3771 3372205 - 3372178 - R 100 -7.9 -5.75342 | CTCGCTCAAAAAAAA TAGACTGTTAT ATAGTA ACAACAGTCTA CAAATTTTATTATAA Cphy_2769 3373639 - 3372248 - | transcriptional regulator TERM 3772 3373543 - 3373557 + gr 93 -6.4 -5.56573 | GCAATTTCGTAGCCA CAGGTA GCT TGCCTG TTTTTATTTCTTTCT Cphy_2770 3374561 - 3373608 - | riboflavin biosynthesis protein RibF TERM 3773 3373828 - 3373838 + gr 71 -6.8 -4.13077 | AGCTTTTGCCCTGCA CCGA CGG TCGG TTTATATCCTATATT Cphy_2771 3375612 - 3374689 - | tRNA pseudouridine synthase B TERM 3774 3375661 - 3375693 + r 100 -16.7 -4.56887 | opp_overlap 3375669 TTTCGTAGTACATCC GTGTTAAAGAAAATT TAT AATTTTCTTTAACAC TTTTCTGCATTTTTC Cphy_2772 3376661 - 3375687 - | phosphoesterase domain-containing protein Cphy_2773 3377083 - 3376673 - | ribosome-binding factor A TERM 3775 3377056 - 3377072 + g 73 -2.3 -5.31275 | overlap 3377058 CTTCTTGATTTATTC TGGTATT CTT AATACTG TTTTTTCTCATAAAA Cphy_2774 3380628 - 3377233 - | translation initiation factor IF-2 TERM 3776 3378327 - 3378313 - G 73 -6.4 -4.23707 | AGAAACTGGAACAAA GATGGT ATC ACCACC CCAATCTTCCGCTAT TERM 3777 3380391 - 3380401 + g 85 -4 -5.77632 | GATCTGCCTTTGCCG TAAC GCT GTTA TTTTTTTCTGGTTTT Cphy_2775 3381019 - 3380672 - | ribosomal protein L7Ae/L30e/S12e/Gadd45 Cphy_2776 3381287 - 3381012 - | hypothetical protein Cphy_2777 3382378 - 3381314 - | NusA antitermination factor Cphy_2778 3382868 - 3382401 - | hypothetical protein TERM 3778 3383022 - 3383003 - R 100 -12.2 -3.86508 | opp_overlap 3383000, overlap 3382999 CACAGCAAAAAGTAA GAGTGGAC TTTC GTCCACTC CCGTCATTATCATAT Cphy_2779 3384076 - 3383099 - | biotin--acetyl-CoA-carboxylase ligase Cphy_2780 3384896 - 3384516 - | rubrerythrin Cphy_2781 3387422 - 3385149 - | hypothetical protein TERM 3779 3386689 - 3386707 + g 74 -7.5 -3.97088 | TCTAATTTATTTTTC TCTTTGC CATTT GCAAAGA TTTCATATTGTAGCG TERM 3780 3387661 - 3387607 - R 100 -8.9 -5.49568 | opp_overlap 3387607 AAGTTAAAACAAAAA TAGCCTTATGTCAAGTAATAGAATT TCATG AATTCTACAACTTTCCATAAAGCTA TTAACTAATTCCTCT Cphy_2782 3389303 - 3387993 - | phosphoribosyl-ATP diphosphatase TERM 3781 3388855 - 3388870 + g 75 -9 -3.53712 | overlap 3388851 GCATCGATGCCTAAC GGAAGG ATAT CCTTCC TTAATTCTTCACGCT Cphy_2783 3390103 - 3389384 - | phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase Cphy_2784 3390730 - 3390140 - | imidazoleglycerol-phosphate dehydratase Cphy_2785 3392134 - 3390821 - | histidinol dehydrogenase TERM 3782 3391291 - 3391305 + g 75 -8.6 -3.51825 | CTGATACTTTCTTAG CAAGTG ATT CACTTG TTGTAATTAGAATAG TERM 3783 3391626 - 3391642 + g 71 -8.7 -3.28714 | overlap 3391624 CCTGGATTTACATTG CCATCAG CAC CTGGTGG TGTTGTCATAGCTAT Cphy_2786 3392847 - 3392200 - | ATP phosphoribosyltransferase catalytic subunit Cphy_2787 3394113 - 3392857 - | histidine--tRNA ligase TERM 3784 3394015 - 3394035 + g 70 -8.3 -3.39892 | overlap 3394011 3394018 3394020 AAATCCATGCAGTGC CAAGCGCTT ACT AAGCTCTTG TTCTAGCATCTTTTT TERM 3785 3394096 - 3394083 - G 70 -8.1 -3.31691 | opp_overlap 3394083 3394084 TATAAATATCACGAA CACCC TCTG GGGTG TGTAATAATCTATCC Cphy_2788 3394816 - 3394280 - | recombination protein U Cphy_2789 3395880 - 3394840 - | RluA family pseudouridine synthase TERM 3786 3395883 - 3395857 - G 79 -11 -2.87468 | overlap 3395859 3395861 CTTTACTATATTATA TAGATGGCCATT AGT AATGGGCATCTA GCGCCGATTTCATAC TERM 3787 3395881 - 3395859 - G 74 -9.2 -2.98719 | overlap 3395857 3395861 TTACTATATTATATA GATGGCCATT AGT AATGGGCATC TAGCGCCGATTTCAT Cphy_2790 3396586 - 3395915 - | HAD family hydrolase Cphy_2791 3397416 - 3396694 - | pseudouridine synthase Cphy_2792 3398904 - 3397438 - | Fmu (Sun) domain-containing protein TERM 3788 3397888 - 3397908 + g 79 -8.3 -4.15044 | overlap 3397892 TTGGTAAGGCTCATG GATACTGCT TGG AGCAGTTTC TTTCTTACGAAGCAG TERM 3789 3397892 - 3397904 + g 84 -7.7 -4.67607 | overlap 3397888 TAAGGCTCATGGATA CTGCT TGG AGCAG TTTCTTTCTTACGAA TERM 3790 3398852 - 3398870 + g 79 -3.1 -5.46629 | GCTTCATATTCGTCT GAAAGCA TCTCC TGCATTC TTTTTTTAAAATCTT Cphy_2793 3399791 - 3398988 - | RelA/SpoT domain-containing protein Cphy_2794 3401244 - 3399814 - | cell envelope-related transcriptional attenuator TERM 3791 3400584 - 3400563 - G 78 -3.7 -5.25803 | overlap 3400564 AATTTCCAGAAAAAA TTGCCTCTT CTCC AAGAAGCAG AATGTTAACAGCATA TERM 3792 3401542 - 3401584 + r 90 -9.4 -4.27316 | opp_overlap 3401542 3401546, overlap 3401546 CACTCTGGCAAAAAA TAAGCCCCTTTTGTTAGA CAAAAAA TCTAACGAAAGAGGTTTA TTTTAACTTACACAA TERM 3793 3401584 - 3401542 - R 89 -7.9 -5.0133 | opp_overlap 3401542 3401546, overlap 3401546 CACTCTGGCAAAAAA TAAGCCCCTTTTGTTAGAC AAAAA ATCTAACGAAAGAGGTTTA TTTTAACTTACACAA TERM 3794 3401546 - 3401580 + r 85 -8 -4.72188 | opp_overlap 3401542 3401546, overlap 3401542 CTGGCAAAAAATAAG CCCCTTTTGTTAGA CAAAAAA TCTAACGAAAGAGG TTTATTTTAACTTAC TERM 3795 3401580 - 3401546 - R 74 -8.7 -3.36166 | opp_overlap 3401546 3401542, overlap 3401542 CTGGCAAAAAATAAG CCCCTTTTGTTAGAC AAAAA ATCTAACGAAAGAGG TTTATTTTAACTTAC Cphy_2795 3402888 - 3401614 - | cell envelope-related transcriptional attenuator TERM 3796 3402199 - 3402211 + g 74 -4.9 -4.85918 | opp_overlap 3402199 TGCATAGCCATCAAT CTTTA TTT TAAAG TTTTGTTGTATCGTA Cphy_2796 3404684 - 3403224 - | aminoacyl-histidine dipeptidase Cphy_2797 3406156 - 3404792 - | hypothetical protein Cphy_2798 3406447 - 3406175 - | hypothetical protein TERM 3797 3406606 - 3406594 - R 71 -7.7 -3.46602 | TTTTTTATATTATAA CCATC TCT GATGG AATATCCCGATTTGC Cphy_2799 3407377 - 3406583 - | beta-lactamase domain-containing protein TERM 3798 3407504 - 3407462 - R 100 -10.2 -5.20606 | opp_overlap 3407461 AAATAGCAAGAAAAA GGGGAG-TGTAACTTAAGTT TTTAG AACCTA-GTTACAACTCCCC CCTTGTTTCCTTATT Cphy_2800 3409214 - 3407493 - | diguanylate cyclase with GAF sensor Cphy_2801 3411358 - 3409247 - | cell division protein FtsA TERM 3799 3410356 - 3410346 - G 70 -5.4 -4.43307 | overlap 3410347 GCTTCAACAAAATAA GGAA GTT TTCC TCCTCCGCCAACAAC TERM 3800 3411466 - 3411430 - R 100 -15.5 -2.91274 | opp_overlap 3411437 3411443, overlap 3411437 TTGATTTTAAGCATA TTTAAAACAGAAGTTGC ATA GCAATTTCTGTTTTAAA AATACAATATCTACC TERM 3801 3411437 - 3411459 + r 100 -11.4 -4.11394 | opp_overlap 3411430 3411437, overlap 3411443 TAAGCATATTTAAAA CAGAAGTTGC ATA GCAATTTCTG TTTTAAAAATACAAT TERM 3802 3411459 - 3411437 - R 88 -9.2 -4.26019 | opp_overlap 3411437 3411443, overlap 3411430 TAAGCATATTTAAAA CAGAAGTTGC ATA GCAATTTCTG TTTTAAAAATACAAT Cphy_2802 3412359 - 3411739 - | dephospho-CoA kinase TERM 3803 3412430 - 3412389 - R 71 -8.3 -3.35679 | gap 1, opp_overlap 3412388, overlap 3412391 3412415 GGGCCGCAGGTACAA TATTT-ATGCAGTGAATTGC AAA ACAATTCACTGCGTGAAACA ACTAGTTTTTCAGTG TERM 3804 3412427 - 3412391 - R 83 -10.3 -3.24924 | opp_overlap 3412388, overlap 3412389 3412415 GCCGCAGGTACAATA TTTATGCAGTGAATTGC AAA ACAATTCACTGCGTGAA ACAACTAGTTTTTCA TERM 3805 3412427 - 3412415 - R 70 -6.3 -4.21933 | opp_overlap 3412388, overlap 3412391 3412389 TGAATTGCAAAACAA TTCAC TGC GTGAA ACAACTAGTTTTTCA Cphy_2803 3415464 - 3412480 - | DNA polymerase I TERM 3806 3413992 - 3414007 + g 78 -4 -5.40474 | TTTTTTAATATCAAA GATTGC AAGT GTAATC TTTTTTTCAAGAAGT Cphy_2804 3416119 - 3415541 - | hypothetical protein TERM 3807 3417458 - 3417423 - R 100 -17.2 -4.71061 | gap 1, opp_overlap 3417423, overlap 3417430 ATTGAGACTCAAAAA GACAAAAGCAAGG-CTA TCA TAGTCCTTGCTTTTGTC TTTTTGTTTTTTAAT TERM 3808 3417423 - 3417458 + r 100 -17.2 -5.77571 | gap 1, opp_overlap 3417423 3417430 ATTGAGACTCAAAAA GACAAAAGCAAGG-CTA TCA TAGTCCTTGCTTTTGTC TTTTTGTTTTTTAAT TERM 3809 3417451 - 3417430 - R 91 -8.1 -4.98672 | gap 1, opp_overlap 3417423, overlap 3417423 CTCAAAAAGACAAAA GCAAGG-CTA TCA TAGTCCTTGC TTTTGTCTTTTTGTT TERM 3810 3417496 - 3417484 - R 81 -9.1 -3.86031 | opp_overlap 3417484 TTAATGAAGTAACAA GTGGC TTC GCCAC TTTAAGATAATCACT TERM 3811 3417484 - 3417496 + r 80 -9.1 -3.62275 | opp_overlap 3417484 TTAATGAAGTAACAA GTGGC TTC GCCAC TTTAAGATAATCACT TERM 3812 3417668 - 3417645 - R 100 -11.8 -5.72622 | opp_overlap 3417644 3417642 CCTATAAATAAAAAA CTACCAGCCA ATCA TAGCTGGTAG ATCTATTAACTTTAA Cphy_2805 3418021 - 3417680 - | hypothetical protein TERM 3813 3418405 - 3418426 + H 100 -14.5 -5.72622 | ATAATAAATTTCTTT GGCTCACCT AAGT AGGTGAGCC TTTTTTGTTTATAGA TERM 3814 3419085 - 3419112 + H 82 -6.2 -4.99043 | overlap 3419088 TGAAATATTGATTAC TTTGGCTCACCT AAGT AGGTGGGCCTTA TTTTATTTATACAAG TERM 3815 3419088 - 3419109 + H 100 -12.3 -4.58946 | overlap 3419085 AATATTGATTACTTT GGCTCACCT AAGT AGGTGGGCC TTATTTTATTTATAC Cphy_2806 3419249 - 3419596 + | hypothetical protein TERM 3816 3419891 - 3419912 + T 100 -14.5 -4.66163 | AGATTGATTTTTTTA GGCTCACCT ACTC AGGTGAGCC TTTTTGCATGCGAAT TERM 3817 3420286 - 3420307 + T 100 -14.5 -3.84514 | opp_overlap 3420279 ATATTAGATTTTTTA GGCTCACCT TATA AGGTGAGCC TTTAATCATTAGACT Cphy_2807 3421581 - 3420322 - | glycosyl transferase family protein TERM 3818 3420637 - 3420647 + g 72 -4 -5.01546 | AGTCCAATCTGCAAC GAAT AGT ATTC TTTTTATATCAGTTT TERM 3819 3421540 - 3421513 - G 80 -6.4 -4.8384 | overlap 3421516 TAAATAATCGAAAAA GGATTTTACTGC CTTA ACAGTAAAATTC CAATTATTGTAACAG Cphy_2808 3422930 - 3421710 - | alpha-clostripain-like protein TERM 3820 3422968 - 3423008 + r 100 -20.9 -4.18303 | opp_overlap 3422974 CTTATTATCTATATT TTTAAATCACACCATAGTG AAA TACTATGGTGTGATTTAAA TTTATCATTTATAAT TERM 3821 3423002 - 3422974 - R 100 -14.8 -3.5944 | opp_overlap 3422968 ATCTATATTTTTAAA TCACACCATAGT GAAAT ACTATGGTGTGA TTTAAATTTATCATT Cphy_2809 3429723 - 3423037 - | chromosome segregation ATPase-like protein Cphy_2810 3430933 - 3429863 - | glycosyl transferase family protein TERM 3822 3430786 - 3430804 + g 73 -3.2 -5.19275 | opp_overlap 3430790, overlap 3430790 CATAAATTTCATTTG TAAATAGT CCT ACTATTTC TTTTGTTTTATCAGT TERM 3823 3430790 - 3430800 + g 72 -4 -5.06411 | opp_overlap 3430790, overlap 3430786 AATTTCATTTGTAAA TAGT CCT ACTA TTTCTTTTGTTTTAT Cphy_2811 3433558 - 3430994 - | glycosyl transferase group 1 TERM 3824 3431297 - 3431281 - G 71 -5.1 -4.61633 | opp_overlap 3431282, overlap 3431257 3431282 ATACAGTTGGAAAAA GCATGCA TTT TGCATGT TTCAGAAGGTTCTGC TERM 3825 3431296 - 3431282 - G 73 -8.6 -3.36256 | opp_overlap 3431282, overlap 3431281 TACAGTTGGAAAAAG CATGCA TTT TGCATG TTTCAGAAGGTTCTG TERM 3826 3431282 - 3431296 + g 75 -8.6 -3.56099 | opp_overlap 3431282 3431281 TACAGTTGGAAAAAG CATGCA TTT TGCATG TTTCAGAAGGTTCTG TERM 3827 3431368 - 3431380 + g 86 -5.5 -5.32882 | TATTTGCTTTTATAC GCGGT TCT ATCGC TTTTTTATAATACTC TERM 3828 3433299 - 3433323 + g 81 -7.3 -4.65819 | opp_overlap 3433302 TCCGGTCTGGGTAAG TCATATTCAAA GGA TTTGAATACGA TTTTCATTTCGTTTT TERM 3829 3433513 - 3433495 - G 77 -3 -5.55769 | overlap 3433474 CTGCATAATAAAAAA GCTCTTTC AAA GTTAGAGC TTCACCATTTTCTAA TERM 3830 3433691 - 3433662 - R 76 -6.5 -4.59424 | opp_overlap 3433662 3433665 AAACTTAAAGTAAAA TAACCTTGCTG TTTTAACG CTGCAAGGTTA TTATTTATGACAAGT TERM 3831 3433662 - 3433691 + r 74 -7.2 -4.06687 | opp_overlap 3433662, overlap 3433665 AAACTTAAAGTAAAA TAACCTTGCTGT TTTAAC GCTGCAAGGTTA TTATTTATGACAAGT Cphy_2812 3434108 - 3433803 - | hypothetical protein Cphy_2813 3435191 - 3434217 - | glycosyl transferase group 1 Cphy_2814 3436719 - 3435346 - | glycosyl transferase family protein Cphy_2815 3437022 - 3437582 + | rubrerythrin TERM 3832 3437679 - 3437621 - f 77 -8.6 -3.7175 | gap 1, opp_overlap 3437628, overlap 3437628 AAAAAGCTACTGAAA CTA-TGAAGTGCACCCTAAATGTTAGT AAAAAA ACTAATATTTAAGGTGCACTTGAATAA TAAATCAGTAGCCGT TERM 3833 3437671 - 3437628 - f 100 -14.9 -3.33483 | opp_overlap 3437628, overlap 3437621 TACTGAAACTATGAA GTGCACCCTAAATGTTAGT AAAAAA ACTAATATTTAAGGTGCAC TTGAATAATAAATCA TERM 3834 3437628 - 3437671 + F 100 -14.9 -3.10164 | opp_overlap 3437628 3437621 TACTGAAACTATGAA GTGCACCCTAAATGTTAGT AAAAAA ACTAATATTTAAGGTGCAC TTGAATAATAAATCA Cphy_2816 3437827 - 3438198 + | hypothetical protein TERM 3835 3438259 - 3438213 - f 95 -11.3 -3.94188 | gap 2, opp_overlap 3438224 3438230 3438232, overlap 3438224 3438230 ATCTACTCTAAATAA TTATGAAGCAAGGAAAAGCTCGA TTT TCGATCTTTTCCTT-C-TCATAA ATTATACACTACGTT TERM 3836 3438224 - 3438250 + F 91 -12.4 -3.45033 | opp_overlap 3438213 3438224 3438230, overlap 3438230 3438232 ATAATTATGAAGCAA GGAAAAGCTCGA TTT TCGATCTTTTCC TTCTCATAAATTATA TERM 3837 3438250 - 3438224 - f 91 -12.4 -3.43553 | opp_overlap 3438224 3438230 3438232, overlap 3438213 3438230 ATAATTATGAAGCAA GGAAAAGCTCGA TTT TCGATCTTTTCC TTCTCATAAATTATA Cphy_2817 3438599 - 3440215 + | peptidase S8 and S53 subtilisin kexin sedolisin Cphy_2818 3440301 - 3440876 + | cell wall hydrolase/autolysin TERM 3838 3440950 - 3440921 - T 89 -7.9 -5.00616 | opp_overlap 3440921 CGTCTTCCTAAAAAA CCGAAGTGAGG TAAATACT CATCACTTCGG TTTCTTTCTTTTTAA TERM 3839 3440921 - 3440950 + T 89 -7.9 -4.94811 | opp_overlap 3440921 CGTCTTCCTAAAAAA CCGAAGTGAGG TAAATACT CATCACTTCGG TTTCTTTCTTTTTAA Cphy_2819 3441824 - 3441069 - | peptidase A24A domain-containing protein TERM 3840 3441704 - 3441664 - G 78 -8.6 -3.74519 | gap 1 AACACCGGTACTAAA TCTC-TTACATGAAGTATA GCAC CACACTTCATGCAATGAGA CCTCGTTATTACGAT Cphy_2820 3442688 - 3441936 - | pyruvate formate-lyase activating enzyme TERM 3841 3442323 - 3442346 + g 74 -2.6 -5.38054 | gap 1, opp_overlap 3442321, overlap 3442324 3442325 TAACATAACTAAGTC TG-TTACCTTT AAC AAAGGTAAGTA TTTTTCTTTATCAGC TERM 3842 3442325 - 3442343 + g 71 -9 -3.17541 | opp_overlap 3442321, overlap 3442324 3442323 ACATAACTAAGTCTG TTACCTTT AAC AAAGGTAA GTATTTTTCTTTATC TERM 3843 3442512 - 3442500 - G 76 -6.3 -4.56597 | opp_overlap 3442500 3442510 TCCGCCTTTTAAAAA TTCCT TAT AGGAA TCATATTCTTTTAGA TERM 3844 3443077 - 3443067 - R 70 -4 -5.01535 | TTATAACTATAAAAA TAAG TTT CTTA TATGGACTGATGGAA Cphy_2821 3443323 - 3443075 - | autonomous glycyl radical cofactor GrcA Cphy_2822 3443625 - 3443422 - | hypothetical protein Cphy_2823 3445703 - 3443643 - | formate acetyltransferase TERM 3845 3443824 - 3443840 + g 72 -9.5 -2.74286 | CGACGATGCATTGGG TTAGCAC CTG GTGCTAA TGGTTCACCCTTCTT TERM 3846 3445921 - 3445904 - H 78 -5.7 -4.82548 | overlap 3445897 GAAAAATATAGAAAA TAGAATA CTAT TATTCTA TCGGATTATACTAAT TERM 3847 3446449 - 3446462 + G 70 -5.3 -4.4784 | opp_overlap 3446449 3446458 GGAAAGGATCAGTAA GTTTG ATAA CAAAC TTTATTTGGAGTTTG TERM 3848 3447630 - 3447618 - g 70 -3.3 -4.99435 | TCCAACAATTAAAAA CCCAG TAT CTCGG AAGTTCTAATCCAAG TERM 3849 3447664 - 3447645 - g 75 -9.4 -3.18199 | GAAGTTCTAATCCAA GACTTCAT ACCG ATGAAGTC CTAATAGCGCTTTCC Cphy_2824 3446378 - 3447856 + | hypothetical protein TERM 3850 3447887 - 3447930 + F 70 -8.4 -3.04291 | gap 1, opp_overlap 3447887, overlap 3447886 3447884 TAAATACTAGTGAAA GCCCTGAAATTTAGACGCC TAAATAC GATGT-TAAATTTCAGGGC ATCTTTTATTTCATA TERM 3851 3447930 - 3447887 - f 75 -8.4 -3.72678 | gap 1, opp_overlap 3447887 3447886 3447884 TAAATACTAGTGAAA GCCCTGAAATTTAGACGCC TAAATAC GATGT-TAAATTTCAGGGC ATCTTTTATTTCATA TERM 3852 3448753 - 3448725 - g 70 -8.4 -3.30771 | GCAGATGTTCCAGAA TTCAAAAACATA TTAAC TATGTTTTCGAA TCCAATCCTTGGAGT Cphy_2825 3448203 - 3449975 + | Na/Pi-cotransporter II-related protein TERM 3853 3450054 - 3450084 + T 84 -3.4 -5.80003 | opp_overlap 3450054 ATGAATAACAAAAAA GTAAGGTGTT AAAGTTACAAC AGCACCTTAC TTTTTTATTTATTCA TERM 3854 3450084 - 3450054 - T 77 -3.2 -5.66229 | opp_overlap 3450054 ATGAATAACAAAAAA GTAAGGTGTTAAAG TTA CAACAGCACCTTAC TTTTTTATTTATTCA Cphy_2826 3451450 - 3450089 - | integral membrane sensor signal transduction histidine kinase Cphy_2827 3452161 - 3451469 - | two component transcriptional regulator Cphy_2828 3452835 - 3452176 - | metal dependent phosphohydrolase Cphy_2829 3454402 - 3452999 - | integral membrane sensor signal transduction histidine kinase TERM 3855 3453619 - 3453639 + g 76 -4.7 -4.91873 | ATAATTCCGTATATC CACGAATCG AAG TGATTGGTG TTTTTAATTCATGTG Cphy_2830 3455084 - 3454422 - | phosphate uptake regulator, PhoU TERM 3856 3455226 - 3455255 + r 71 -8.1 -3.31103 | opp_overlap 3455225 3455224, overlap 3455226 3455225 3455249 TTCATTGGAAATACT TTTTCATTGAAAA TACT TTTTCATTGAAAA TACTTTTTCAATTTT Cphy_2831 3456044 - 3455286 - | phosphate ABC transporter, ATPase subunit Cphy_2832 3456933 - 3456049 - | phosphate ABC transporter, inner membrane subunit PstA Cphy_2833 3457922 - 3456957 - | phosphate ABC transporter, inner membrane subunit PstC TERM 3857 3457284 - 3457296 + g 70 -3.4 -5.00884 | TTTAGTAGCTCCTAC TGCT AAGGA AGCA TTTTTTAAAGAAGCT TERM 3858 3457961 - 3458002 + r 71 -5.3 -4.64159 | gap 1, opp_overlap 3457960 3457963, overlap 3457965 CTTTCTAAACCTAAG TAC-TTGGTTGCATAGGA TGTACTC TCCTATGCAACCATTGAA TTTCTTATTGTTTCT TERM 3859 3457965 - 3457997 + r 100 -15.1 -3.41554 | opp_overlap 3457963 3457960, overlap 3457961 CTAAACCTAAGTACT TGGTTGCATAGGA TGTACTC TCCTATGCAACCA TTGAATTTCTTATTG Cphy_2834 3459092 - 3458169 - | phosphate binding protein TERM 3860 3459402 - 3459353 - R 100 -11.6 -5.64274 | opp_overlap 3459353 CCAGGGATAAAAAAA CGGGATACCCCAGATATTAAGG CTTTTC CCTTAATACATTTGGTATCCCG TTTCTATATTACAAT TERM 3861 3459353 - 3459402 + r 90 -9.4 -4.21142 | opp_overlap 3459353 CCAGGGATAAAAAAA CGGGATACCCCAGATATTAAGG CTTTTC CCTTAATACATTTGGTATCCCG TTTCTATATTACAAT Cphy_2835 3461285 - 3459444 - | diguanylate cyclase/phosphodiesterase TERM 3862 3461585 - 3461559 - R 100 -11.6 -4.28548 | opp_overlap 3461559 3461575, overlap 3461574 ACGGACGCATGAAAA GAGGCTCCCAAA TAT CTTGGGAACCCC TAATTCATTATAAGG Cphy_2836 3463476 - 3461725 - | peptidoglycan-binding LysM TERM 3863 3464699 - 3464685 - g 79 -3.5 -5.45726 | CATACTGTAAAAAAA GGTGA TTTAT CCACC TATCAGGGTAATTGT TERM 3864 3464829 - 3464807 - g 73 -7 -4.0156 | overlap 3464808 CTATAGTAATAATAA CGGTAGCCCT TTA AAGACTACCA TAAAAGCGATTAAAG Cphy_2837 3463755 - 3468050 + | CoA-substrate-specific enzyme activase TERM 3865 3468051 - 3468041 - f 70 -4 -5.01732 | AACCGCTGTAAAAAA TCTA AAA TAGA AAATGTTTGAAAGAA TERM 3866 3468083 - 3468055 - f 100 -16.3 -4.90471 | opp_overlap 3468052 3468064 ATCTAAAATAGAAAA TGTTTGAAAGAAC AAA GTTCTTTCAAACA GAAGTTACTACCTGT TERM 3867 3468492 - 3468516 + G 76 -5 -4.90266 | opp_overlap 3468492 TTGTAAACTGAAAAA GAGTAGATTG TTATT CTGTCTACTC TTTTTGATTAATACA TERM 3868 3469230 - 3469215 - g 78 -6.2 -4.84274 | TAACTATATGAAAAA TCTCAT TGAG ATGAGA GAACAAGCAGAAAAA Cphy_2838 3468220 - 3470802 + | multi-sensor hybrid histidine kinase TERM 3869 3470875 - 3470911 + T 100 -13.2 -3.32765 | opp_overlap 3470875 GATTTTAACGTTAAA TACCCCTCTGTACT TAAACAACT GGTACAGAGGGGTA TTCCTATCTAAAATT TERM 3870 3470911 - 3470875 - T 95 -12.5 -3.66654 | opp_overlap 3470875 GATTTTAACGTTAAA TACCCCTCTGTAC TTAAACAACTG GTACAGAGGGGTA TTCCTATCTAAAATT Cphy_2839 3471602 - 3470925 - | uracil-DNA glycosylase Cphy_2840 3472380 - 3471604 - | imidazoleglycerol phosphate synthase, cyclase subunit Cphy_2841 3473003 - 3472389 - | imidazole glycerol phosphate synthase, glutamine amidotransferase subunit TERM 3871 3473343 - 3473312 - R 100 -8.2 -5.75478 | gap 1, opp_overlap 3473312 AATCATACAAAAAAA CAGTAACC-TATTCT TTT AGAATCTGGTTACTG TTCTTGTTATACTCG TERM 3872 3473312 - 3473343 + r 79 -8.2 -4.05004 | gap 1, opp_overlap 3473312 AATCATACAAAAAAA CAGTAACC-TATTCT TTT AGAATCTGGTTACTG TTCTTGTTATACTCG Cphy_2842 3475293 - 3473425 - | hypothetical protein Cphy_2843 3476234 - 3475326 - | response regulator receiver modulated CheW protein Cphy_2844 3478206 - 3476824 - | cysteine desulfurase TERM 3873 3477565 - 3477553 - G 78 -9.1 -3.66803 | CCCTAACATGTTAAA CGCTC GAT GAGCG ACAATTTGTGCGCCA TERM 3874 3478575 - 3478537 - H 100 -19.3 -3.8211 | opp_overlap 3478537, overlap 3478540 3478560 TTGTACGGATAAGAA GAAGGATCTTTTACAAA GTAAA TTTGTAAAAGATCCTTC TTTTATAATGACTCC TERM 3875 3478537 - 3478575 + H 100 -19.3 -4.4767 | opp_overlap 3478537 3478540 3478560 TTGTACGGATAAGAA GAAGGATCTTTTACAAA GTAAA TTTGTAAAAGATCCTTC TTTTATAATGACTCC TERM 3876 3478572 - 3478540 - H 100 -15.2 -4.03888 | opp_overlap 3478537, overlap 3478537 3478560 TACGGATAAGAAGAA GGATCTTTTACAAA GTAAA TTTGTAAAAGATCC TTCTTTTATAATGAC TERM 3877 3480948 - 3480962 + H 77 -8.6 -3.57615 | ACACGTACTGACTGA TCCATC AAA GATGGA TTTACGCCCTATTCA TERM 3878 3481125 - 3481136 + H 76 -7.2 -4.2354 | AGGTTCTCTTTCACT CCCC TCCC GGGG TTCTTTTCACCTTTC TERM 3879 3481361 - 3481378 + H 93 -11.3 -3.63895 | opp_overlap 3481360 3481359 TTGCGGTCCATAACC CCGTGAG TAAA CTCACGG TTTAGGCTCCTTCCC TERM 3880 3483149 - 3483169 + H 80 -8.9 -3.64371 | opp_overlap 3483148 3483144, overlap 3483150 CAGTTTCAAATGCAG TCCCAGGGT TGA GCCCTGGGC TTTCACATCTGACTT TERM 3881 3483150 - 3483168 + H 89 -12.4 -2.7814 | opp_overlap 3483148 3483144, overlap 3483149 AGTTTCAAATGCAGT CCCAGGGT TGA GCCCTGGG CTTTCACATCTGACT TERM 3882 3483790 - 3483768 - H 87 -10.8 -3.5332 | overlap 3483757 AAACTCTCAAATTAA GATTTTTAAC AAA GTTAAAAATC GATACTAATTGACGT TERM 3883 3484083 - 3484094 + H 71 -3 -5.16472 | opp_overlap 3484083, overlap 3484087 TTTGTTTGTCAAGAA CTTT TTTC AAAG TTTTTTGAAATTTTT TERM 3884 3484087 - 3484104 + H 86 -5.7 -5.4593 | opp_overlap 3484083, overlap 3484083 TTTGTCAAGAACTTT TTTCAAA GTTT TTTGAAA TTTTTATTCTTTTCA TERM 3885 3484169 - 3484183 + H 88 -7.2 -4.99435 | CTTCTAATATGTCAA GCTTTA ATT TAAAGC TTTTTAGTTATTACG TERM 3886 3485821 - 3485809 - g 71 -4.9 -4.55798 | GAGGTTAAATTAAAA TATCT TGC AGATA ATGATTTTAAGAACT Cphy_2845 3484852 - 3486042 + | hypothetical protein TERM 3887 3486271 - 3486289 + F 72 -2.5 -5.43414 | gap 1 ATTTTTATTATTCTT TC-GTTGT AAAA ACAACAGA TTTTTTATCTATCAT Cphy_2846 3486359 - 3488224 + | hydroxylamine reductase Cphy_2847 3488737 - 3490245 + | 2-keto-3-deoxygluconate permease TERM 3888 3490252 - 3490235 - T 74 -6.3 -4.42062 | opp_overlap 3490235 CATGTTTGAAACAAA GTATAGC TTAA GCCATAC ATTTAGTACTGCTTA Cphy_2848 3492104 - 3490641 - | glycoside hydrolase family protein TERM 3889 3492279 - 3492299 + r 71 -8.3 -3.30071 | opp_overlap 3492280, overlap 3492277 3492276 3492280 GTCAATCTAAAAAAA AGGAAGGTA TTT TACCTTCCC TAATTATTTTTTTGT TERM 3890 3492298 - 3492280 - R 100 -11.8 -5.86332 | opp_overlap 3492279 3492277 3492276 3492280 TCAATCTAAAAAAAA GGAAGGTA TTT TACCTTCC CTAATTATTTTTTTG TERM 3891 3492280 - 3492298 + r 87 -11.8 -2.55602 | opp_overlap 3492280, overlap 3492279 3492277 3492276 TCAATCTAAAAAAAA GGAAGGTA TTT TACCTTCC CTAATTATTTTTTTG Cphy_2849 3493177 - 3492314 - | NLP/P60 protein Cphy_2850 3493494 - 3493177 - | phage holin TERM 3892 3494073 - 3494056 - R 86 -4.1 -5.88471 | GAGCACGAAAAAAAA GACCATC ATAC AACGGTC TTTACTTATCATTAT TERM 3893 3496380 - 3496394 + r 77 -8.6 -3.57615 | ACACGTACTGACTGA TCCATC AAA GATGGA TTTACGCCCTATTCA TERM 3894 3496557 - 3496568 + r 76 -7.2 -4.2354 | AGGTTCTCTTTCACT CCCC TCCC GGGG TTCTTTTCACCTTTC TERM 3895 3496793 - 3496810 + r 93 -11.3 -3.63895 | opp_overlap 3496792 3496791 TTGCGGTCCATAACC CCGTGGA TAAA TCCACGG TTTAGGCTCCTTCCC TERM 3896 3497462 - 3497482 + r 77 -9.1 -3.29459 | overlap 3497454 3497465 ACTGAGCTACACCCC CAGGTGAAT TAA ATTCACTTG TTAAGTTGTTAAATG TERM 3897 3497465 - 3497479 + r 72 -7.2 -3.77953 | overlap 3497454 3497462 GAGCTACACCCCCAG GTGAAT TAA ATTCAC TTGTTAAGTTGTTAA TERM 3898 3498765 - 3498785 + r 80 -8.9 -3.64371 | opp_overlap 3498764 3498760, overlap 3498766 CAGTTTCAAATGCAG TCCCAGGGT TGA GCCCTGGGC TTTCACATCTGACTT TERM 3899 3498766 - 3498784 + r 89 -12.4 -2.7814 | opp_overlap 3498764 3498760, overlap 3498765 AGTTTCAAATGCAGT CCCAGGGT TGA GCCCTGGG CTTTCACATCTGACT TERM 3900 3499406 - 3499384 - R 87 -10.8 -3.5332 | overlap 3499373 AAACTCTCAAATTAA GATTTTTAAC AAA GTTAAAAATC GATACTAATTGACGT TERM 3901 3499407 - 3499437 + r 72 -4.9 -4.86773 | gap 1, opp_overlap 3499407 3499406 3499409 3499415, overlap 3499410 3499415 ACAAAGTTAAAAATC GATA-CTAATTGAC GTTA GTCAATTAGATACC TTTTTGATGGTTTTA TERM 3902 3500047 - 3500024 - R 95 -9 -4.97405 | opp_overlap 3500023 3500026 3500042 ACGGATAAAAAGAAA TACTCCCTTA ATAC TAAGGAAGTA CCTTCTATATAAATT Cphy_2851 3500605 - 3500321 - | hypothetical protein TERM 3903 3500816 - 3500860 + r 72 -5.8 -4.39386 | opp_overlap 3500816, overlap 3500810 CTATCAATGTAAAAA GGATGCTATCTATATAATGA AATCA TCACTACTTAGATAGCACCC TTTTCATAATTTAAA TERM 3904 3500860 - 3500816 - R 100 -12.4 -4.7629 | opp_overlap 3500816 3500810 CTATCAATGTAAAAA GGATGCTATCTATATAATGA AATCA TCACTACTTAGATAGCACCC TTTTCATAATTTAAA Cphy_2852 3501383 - 3500994 - | hypothetical protein Cphy_2853 3502117 - 3501425 - | hypothetical protein Cphy_2854 3503712 - 3502213 - | integral membrane sensor signal transduction histidine kinase Cphy_2855 3504386 - 3503712 - | two component transcriptional regulator Cphy_2856 3505006 - 3504707 - | hypothetical protein Cphy_2857 3505872 - 3505060 - | peptidylprolyl isomerase Cphy_2858 3506210 - 3506770 + | thymidine kinase TERM 3905 3506840 - 3506875 + F 100 -13.6 -4.99043 | gap 1, opp_overlap 3506837 TTTCTGTAACTATTA GTGTTAGGGTATGCAAA TTT TTTGCAT-CTCTAACAC TTTTATTTATGGAAG TERM 3906 3506998 - 3506962 - f 86 -4 -5.71712 | gap 1 TTTTACATAAAAAAA GAGAACAAAAAGAT-AT TTAC ATAATCTTTCTATCCTC ATGCTTTAGTGGAGA TERM 3907 3507238 - 3507223 - f 81 -10.4 -2.94912 | opp_overlap 3507222 GCTCTAAGTCAGACA GCTGCC ATTA GGCAGC GTATGCTAAATTATC TERM 3908 3507485 - 3507443 - f 76 -8.6 -3.54771 | gap 1, opp_overlap 3507416, overlap 3507446 TTTACAATATTATAA TAACAGCTGCAGCTTTTCG TGTTAT CGAAGA-CTGCAGCCGTCA CATGTATGAATATAC TERM 3909 3507482 - 3507446 - f 77 -8.1 -3.89893 | gap 1, opp_overlap 3507416, overlap 3507443 ACAATATTATAATAA CAGCTGCAGCTTTTCG TGTTAT CGAAGA-CTGCAGCCG TCACATGTATGAATA TERM 3910 3509279 - 3509259 - g 90 -6.9 -5.09895 | TAGTTAGGCAAAAAA TGCGTGTAT TAT ATACACTCA ATAGATATGAAGAAG Cphy_2859 3508472 - 3509422 + | helix-turn-helix domain-containing protein TERM 3911 3509542 - 3509484 - T 77 -3 -5.52023 | gap 3, opp_overlap 3509486 3509488 3509501, overlap 3509488 3509501 AGTACGAATAAAAAA GTAATATATAACAAAAACCGTAAAATCCA TGCA TGGATTGCACGGTTTTTGTCATATAT--- GTATTAAATCGTTTT TERM 3912 3509486 - 3509543 + T 100 -13.1 -3.15124 | opp_overlap 3509484 3509488 3509501, overlap 3509488 3509501 TACGAATAAAAAAGT AATATATAACAAAAACCGTAAAATCCA TGCA TGGATTGCACGGTTTTTGTCATATATG TATTAAATCGTTTTC TERM 3913 3509541 - 3509488 - T 100 -20.1 -4.04157 | opp_overlap 3509486 3509488 3509501, overlap 3509484 3509501 CGAATAAAAAAGTAA TATATAACAAAAACCGTAAAATCCA TGCA TGGATTGCACGGTTTTTGTCATATA TGTATTAAATCGTTT TERM 3914 3509488 - 3509541 + T 100 -15.7 -3.12432 | opp_overlap 3509488 3509484 3509501, overlap 3509486 3509501 CGAATAAAAAAGTAA TATATAACAAAAACCGTAAAATCCA TGCA TGGATTGCACGGTTTTTGTCATATA TGTATTAAATCGTTT TERM 3915 3509528 - 3509501 - T 95 -9.2 -5.28561 | opp_overlap 3509488 3509486 3509501, overlap 3509488 3509484 AATATATAACAAAAA CCGTAAAATCCA TGCA TGGATTGCACGG TTTTTGTCATATATG TERM 3916 3509501 - 3509528 + T 85 -7 -4.96762 | opp_overlap 3509501 3509488 3509484, overlap 3509488 3509486 AATATATAACAAAAA CCGTAAAATCCA TGCA TGGATTGCACGG TTTTTGTCATATATG Cphy_2860 3509970 - 3509560 - | response regulator receiver protein TERM 3917 3510177 - 3510143 - R 100 -11.7 -4.59773 | gap 2, opp_overlap 3510146 3510148 GGGCACTCCTAAAAA GCAGAGCCT-ACA-TGT TTT ACAATGTTAGGCTCTGC TTCCAAATATCTTAC Cphy_2861 3510669 - 3510427 - | hypothetical protein Cphy_2862 3512362 - 3511058 - | signal transduction histidine kinase regulating citrate/malate metabolism TERM 3918 3512576 - 3512626 + H 100 -24 -5.626 | opp_overlap 3512583 AAATGCGATTTTGAT TCACATATTTTTGTAAGTCATTAA CAT TTAATGATTTACAAAAATATGTGA TTTTTTTATGAGCTA TERM 3919 3512619 - 3512583 - H 100 -12.7 -2.91383 | opp_overlap 3512576 ATTTTGATTCACATA TTTTTGTAAGTCATTAA CAT TTAATGATTTACAAAAA TATGTGATTTTTTTA TERM 3920 3512734 - 3512721 - H 71 -6.7 -4.09685 | CTTTATTGTTCAAAA GACAG CAAG CTGTC AAATATTCAATATTT Cphy_2863 3512763 - 3512966 + | cold-shock DNA-binding domain-containing protein TERM 3921 3513034 - 3512976 - T 100 -12.2 -4.27467 | gap 3, opp_overlap 3512987, overlap 3512983 3512987 GCATAATCGAATAAA GATTTAAGAAAGAGTCTCCGTCTTCAAGC AATA GCTTGAAGACGGAGACTCTTTCTCTA--- GGAGAATACACTTCG TERM 3922 3513030 - 3512983 - T 100 -33.2 -3.28906 | opp_overlap 3512987, overlap 3512976 3512987 CGAATAAAGATTTAA GAAAGAGTCTCCGTCTTCAAGC AATA GCTTGAAGACGGAGACTCTTTC TCTAGGAGAATACAC TERM 3923 3512987 - 3513026 + T 100 -28.2 -4.03413 | opp_overlap 3512983 3512976 3512987 TAAAGATTTAAGAAA GAGTCTCCGTCTTCAAGC AATA GCTTGAAGACGGAGACTC TTTCTCTAGGAGAAT TERM 3924 3513026 - 3512987 - T 100 -28.2 -4.27007 | opp_overlap 3512987, overlap 3512983 3512976 TAAAGATTTAAGAAA GAGTCTCCGTCTTCAAGC AATA GCTTGAAGACGGAGACTC TTTCTCTAGGAGAAT TERM 3925 3513118 - 3513094 - T 100 -8.6 -5.60993 | opp_overlap 3513094 CTTCGCATAAAAAAA GAGCAAACCA TAACT TGGGTTGCTC TTTTTTTTATGACAA TERM 3926 3513094 - 3513118 + T 100 -8.6 -5.93809 | opp_overlap 3513094 CTTCGCATAAAAAAA GAGCAAACCA TAACT TGGGTTGCTC TTTTTTTTATGACAA TERM 3927 3513121 - 3513172 + T 73 -7.6 -3.65046 | gap 1, opp_overlap 3513134 3513135, overlap 3513123 ACTTGGGTTGCTCTT TTTTTTATGACAAG-GAAAGTTCGT GAA ACATACTTTCACTTGTCATGAAATA TTGTTAAGCTAAAAG TERM 3928 3513123 - 3513170 + T 84 -10.2 -3.40611 | gap 1, opp_overlap 3513134 3513135, overlap 3513121 TTGGGTTGCTCTTTT TTTTATGACAAG-GAAAGTTCGT GAA ACATACTTTCACTTGTCATGAAA TATTGTTAAGCTAAA Cphy_2864 3514868 - 3513222 - | putative manganese-dependent inorganic pyrophosphatase Cphy_2865 3515346 - 3514882 - | SsrA-binding protein Cphy_2866 3517519 - 3515369 - | ribonuclease R TERM 3929 3515657 - 3515671 + g 74 -4.3 -5.02439 | opp_overlap 3515657 AAATTGGCTCATATA CTCAA CTTTC TTGAG TTTTTCTACTTCTCT TERM 3930 3517467 - 3517487 + g 70 -5.5 -4.47161 | CGATAAGATCTGTCT GTTATTACT TGA AGCAATAAC TCTTTTTTATTATTT TERM 3931 3517679 - 3517691 + r 73 -7.7 -3.59979 | opp_overlap 3517661 3517656 3517674 GAACCAGTAACGTAT TCCGA TAA TCGGA TTTACGGTGCAAAGA TERM 3932 3517697 - 3517713 + r 72 -5.1 -4.8667 | GATAATCGGATTTAC GGTGC AAAGAAC GCACC TTTTTCTAGAATCTG Cphy_2867 3518318 - 3518073 - | preprotein translocase, SecG subunit Cphy_2868 3519942 - 3518398 - | phosphoglyceromutase TERM 3933 3519291 - 3519275 - G 71 -8.7 -3.28791 | opp_overlap 3519277, overlap 3519278 ACGCCTTCTGCATAA GAAGCAG CTA CTGCCTC TACTGCATTCGCAGC Cphy_2869 3521570 - 3520215 - | MATE efflux family protein TERM 3934 3521639 - 3521606 - R 84 -11.2 -3.12351 | opp_overlap 3521606 TGTCTTGATACGTAA TTACGGAAGGATAC TAAACC ATACCCTTCCGTAA TTTTAGACCCCTTAT TERM 3935 3521606 - 3521639 + r 79 -8.3 -4.10007 | opp_overlap 3521606 TGTCTTGATACGTAA TTACGGAAGGATA CTAAACCA TACCCTTCCGTAA TTTTAGACCCCTTAT Cphy_2870 3522695 - 3521814 - | hypothetical protein TERM 3936 3522888 - 3522907 + H 71 -8 -3.29704 | overlap 3522886 3522884 TTAAGTGTATTGTAA CTTTTCTA TGAA TAGAAAAG TGTCTTTCATACAAG TERM 3937 3525008 - 3524977 - H 84 -3.7 -5.76633 | TCAGACATAAAAAAA TCACCTCTTGC GTTATATTTA GCAAGGGGCGA ATGAATTCGCGGTAC Cphy_2873 3525595 - 3526302 + | hypothetical protein TERM 3938 3526392 - 3526334 - T 76 -6.3 -4.56367 | gap 2, opp_overlap 3526335, overlap 3526335 TACCTTATAAATAAA GGGAGTTACAGAGAACTAAAATGTTGAAT AAA ATCTAACACTTTGGTTCCCTGC-AC-CCC CTTTACTTATACGAT TERM 3939 3526393 - 3526335 - T 85 -11.2 -3.33097 | opp_overlap 3526335, overlap 3526334 ACCTTATAAATAAAG GGAGTTACAGAGAACTAAAATGTTGAAT AAA ATCTAACACTTTGGTTCCCTGCACCCCC TTTACTTATACGATA Cphy_2874 3527218 - 3526472 - | Triose-phosphate isomerase Cphy_2875 3528548 - 3527355 - | phosphoglycerate kinase TERM 3940 3528090 - 3528074 - G 71 -9.5 -2.51547 | overlap 3528038 3528071 3528076 GTGTGATACCAACAT TAGAGCA ATG TGCTCTA TGAGCTGTACCAAAT TERM 3941 3528716 - 3528689 - R 100 -17.8 -5.17576 | opp_overlap 3528682 3528711 TAGTAATTTAAAAAA TGGGTCCGGTCC ATAA AGACCGGACCCA TACTGGATCTTCTAT Cphy_2876 3529741 - 3528731 - | glyceraldehyde-3-phosphate dehydrogenase, type I Cphy_2877 3530705 - 3530109 - | signal peptidase I Cphy_2878 3531322 - 3530717 - | signal peptidase I TERM 3942 3531384 - 3531344 - R 70 -8.4 -3.05844 | gap 1 CCTTTCATTGGAACA GGCTGTTGCAA-GTCGTCC TATA AGACATCTTTACAACAGCC CTCACACTTGTTATA Cphy_2879 3531650 - 3531402 - | DNA-directed RNA polymerase, omega subunit Cphy_2880 3531962 - 3531687 - | hypothetical protein Cphy_2881 3532853 - 3531975 - | hypothetical protein Cphy_2882 3534075 - 3533119 - | G3E family GTPase-like protein TERM 3943 3534015 - 3534026 + g 71 -4.4 -4.72486 | CTTTCATTGTTTCAA GTAC AAAT GTAC TTTTTCCACTTTCTA Cphy_2883 3535258 - 3534176 - | cobalamin synthesis protein P47K TERM 3944 3535294 - 3535318 + r 86 -7.1 -4.77047 | overlap 3535312 GCTTTCGCACCTTTT CCTTGCCGATG GTA CACTGGTAAGG TTTCTTTATCTTTTC Cphy_2884 3537504 - 3535606 - | glycerophosphoryl diester phosphodiesterase TERM 3945 3536542 - 3536558 + g 73 -7.3 -4.17698 | overlap 3536534 TACTTCTGAAATTTT TTCTTGC ATT GCAAGGA TTTGTGTCTCTCCCT Cphy_2885 3538923 - 3537625 - | major facilitator transporter TERM 3946 3538204 - 3538192 - G 72 -4.1 -5.04325 | TGTAAACCATAAAAA GATAG ATG CTACC AAGAAGATTAAACTA TERM 3947 3539144 - 3539182 + r 80 -10.4 -2.64144 | opp_overlap 3539149, overlap 3539149 AGCTTGGCTCATTAG AAAAAGCTGACTCCTGCA CAA TACAGAAGTCAGCTTTTC GTATTTACCTAAACA TERM 3948 3539149 - 3539177 + r 95 -10.3 -4.50358 | opp_overlap 3539149, overlap 3539144 GGCTCATTAGAAAAA GCTGACTCCTGCA CAA TACAGAAGTCAGC TTTTCGTATTTACCT TERM 3949 3539177 - 3539149 - R 100 -14.7 -4.91109 | opp_overlap 3539149 3539144 GGCTCATTAGAAAAA GCTGACTCCTGCA CAA TACAGAAGTCAGC TTTTCGTATTTACCT Cphy_2886 3541755 - 3539209 - | membrane protein-like protein TERM 3950 3541842 - 3541804 - R 100 -17 -3.96892 | AATCGGTAGCACAAA TTCTTAGGGTGAAAAATC CTT GATTCTTCACCCTAAGTA ACACGCCTGTTTAAT Cphy_2887 3542730 - 3541987 - | glycosyl transferase family protein TERM 3951 3542177 - 3542197 + g 71 -6.9 -3.88766 | AAATTAAAATTTTCT GGAACAAGT TTT AATTGTTCC TTTAATATATCCGCT TERM 3952 3542744 - 3542780 + r 71 -5.2 -4.58085 | opp_overlap 3542732 3542730, overlap 3542732 3542745 3542767 ATACGCATTTTCCTT ATGCGTATTACGCA CTTTCTTTA TGCGTATTACGCAC TTTCTTTATGCATAT TERM 3953 3542745 - 3542779 + r 74 -8.7 -3.33766 | opp_overlap 3542732 3542730, overlap 3542732 3542744 3542767 TACGCATTTTCCTTA TGCGTATTACGCA CTTTCTTTA TGCGTATTACGCA CTTTCTTTATGCATA Cphy_2888 3543983 - 3542889 - | UDP-galactopyranose mutase Cphy_2889 3546097 - 3544001 - | hypothetical protein TERM 3954 3545122 - 3545110 - G 71 -6.9 -3.84808 | TCGAAGCTACAATAA GCCCC TCC GAGGC ACGATATAAACCTTC TERM 3955 3545544 - 3545528 - G 86 -8.1 -4.37554 | AAACTGAAACATAAA GTGATAT CTG ATATCAC TTCCAGCAAAATGGG TERM 3956 3546198 - 3546160 - R 80 -9.6 -3.49114 | opp_overlap 3546168, overlap 3546167 3546172 TATACTATACTATAA TTGGAAAGGAAAGGGGGT AAC ACACCCTTCCTTTACCAA CACATTTCATTTAAT Cphy_2890 3548279 - 3546243 - | ATP-dependent DNA helicase RecG TERM 3957 3546274 - 3546294 + g 70 -8.4 -3.33162 | opp_overlap 3546274 3546273 GCAAGTCGTTCAAAC TTATCCTG AAGTG CAGGATAA TTATCACATAAGCTA TERM 3958 3548557 - 3548593 + r 74 -3.9 -5.1848 | opp_overlap 3548557 ATGGAATCAAAAAAA TCGCATATTTGAA AAAACTTTCCG TTCAAATACGCGA TTTTTTAAATTAGTT TERM 3959 3548593 - 3548557 - R 100 -8.9 -5.64006 | opp_overlap 3548557 ATGGAATCAAAAAAA TCGCATATTTGAAAAAA CTT TCCGTTCAAATACGCGA TTTTTTAAATTAGTT Cphy_2891 3550367 - 3548685 - | Dak phosphatase Cphy_2892 3550744 - 3550388 - | hypothetical protein TERM 3960 3551214 - 3551236 + r 89 -7.7 -5.00642 | opp_overlap 3551215, overlap 3551215 CCTACACAACAAAAA AGGGTGTCA GTTTA TGACACCCC TTTTTATATGGATTA TERM 3961 3551215 - 3551235 + r 89 -11.2 -3.59301 | opp_overlap 3551215, overlap 3551214 CTACACAACAAAAAA GGGTGTCA GTTTA TGACACCC CTTTTTATATGGATT TERM 3962 3551235 - 3551215 - R 100 -11.2 -5.60689 | opp_overlap 3551215 3551214 CTACACAACAAAAAA GGGTGTCA GTTTA TGACACCC CTTTTTATATGGATT Cphy_2893 3551446 - 3551249 - | ribosomal protein L28 Cphy_2894 3552029 - 3551616 - | hypothetical protein Cphy_2895 3553351 - 3552029 - | hypothetical protein TERM 3963 3552470 - 3552509 + g 75 -5.4 -4.86385 | gap 1, overlap 3552454 3552472 AAGAAAAATATTTTT TAGATTTTTTATCTT-ATT CCC AATCGAGATAAAAAATCTC TTTATTTTTCCACAT TERM 3964 3552472 - 3552507 + g 76 -8 -4.04587 | gap 1, overlap 3552470 GAAAAATATTTTTTA GATTTTTTATCTT-ATT CCC AATCGAGATAAAAAATC TCTTTATTTTTCCAC TERM 3965 3553017 - 3553043 + g 76 -3.1 -5.3798 | gap 1, overlap 3553017 3553019 TTTGAATTTTTTTCT G-ATTCTGATGA TTCA TCCTCAGAATGC TTTTTCTTATTCTTC Cphy_2896 3553701 - 3553393 - | hypothetical protein Cphy_2897 3555202 - 3553805 - | hypothetical protein Cphy_2898 3556476 - 3555322 - | hypothetical protein Cphy_2899 3557668 - 3556463 - | hypothetical protein TERM 3966 3556787 - 3556772 - G 73 -3.3 -5.1963 | TCCAAGGAATAAAAA TACCA ATACTG TGGTA CCAAAATATAAGATA TERM 3967 3557529 - 3557548 + g 77 -10 -3.14344 | opp_overlap 3557515 ACACCGATGGATACG CCTGCCTT CGGT GAGGCAGG TTCCTCGGACACATA TERM 3968 3557599 - 3557568 - G 100 -11 -5.03994 | overlap 3557562 TCGGACACATAAAAA GCAGTGCCTATTAT AAAC ATAATAAGCACAGC AATTAGAAACATCCA TERM 3969 3557628 - 3557648 + g 72 -3.9 -4.90013 | overlap 3557626 3557629 CATATTTGTTTATTT TGACCCCAA ACT TTGAGGTCC TTTTTCATTAAATTC Cphy_2900 3559112 - 3557688 - | pyruvate kinase Cphy_2901 3560023 - 3559130 - | hypothetical protein TERM 3970 3560364 - 3560351 - H 82 -9.5 -3.63092 | overlap 3560349 ACATTGATATAAAGA GGCGC TATT GCGCC AGAATAGAGGTTAAT Cphy_2902 3560380 - 3562164 + | fibronectin-binding A domain-containing protein Cphy_2903 3562210 - 3563034 + | HisJ family histidinol phosphate phosphatase Cphy_2904 3563268 - 3563867 + | hypothetical protein TERM 3971 3564030 - 3563980 - T 100 -14.2 -3.97674 | opp_overlap 3563977 3563986, overlap 3563986 TCATCAGTTAAATAA TAAAAAGCGCATCTGACAGAAGTT TTT AACTTTAGGCAGATGCGCTTTTAA ATACCTTTTTAAACT TERM 3972 3564024 - 3563986 - T 100 -13.2 -5.38549 | opp_overlap 3563977 3563986, overlap 3563980 GTTAAATAATAAAAA GCGCATCTGACAGAAGTT TTT AACTTTAGGCAGATGCGC TTTTAAATACCTTTT TERM 3973 3563986 - 3564024 + T 100 -15.4 -4.22948 | opp_overlap 3563986 3563980, overlap 3563977 GTTAAATAATAAAAA GCGCATCTGACAGAAGTT TTT AACTTTAGGCAGATGCGC TTTTAAATACCTTTT Cphy_2905 3565140 - 3564067 - | tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase TERM 3974 3565267 - 3565252 - R 70 -6.2 -4.29304 | overlap 3565257 CCACTATAATACAAA CAAATG CAAG CATTTG CTAGGCTCATACAAG TERM 3975 3565374 - 3565327 - R 90 -5 -5.7946 | gap 1, opp_overlap 3565361, overlap 3565328 TCGTGAATAAAAAAA TCAACAAGGCACTGTTCT-ATCC TAA GATTGAAAACAGCACCTTGTTGT TACATGTCAAGATGA TERM 3976 3565373 - 3565328 - R 82 -8.5 -4.06592 | gap 1, opp_overlap 3565361, overlap 3565327 CGTGAATAAAAAAAT CAACAAGGCACTGTTCT-ATCC TAA GATTGAAAACAGCACCTTGTTG TTACATGTCAAGATG Cphy_2906 3565900 - 3565460 - | FeS cluster assembly scaffold protein NifU Cphy_2907 3567148 - 3565952 - | cysteine desulfurase NifS TERM 3977 3567468 - 3567479 + H 73 -4.4 -5.03145 | overlap 3567453 3567475 TGTCGGTATTTCTCT GACA ATGT TGTC TTTTTTCGACAATTC TERM 3978 3568089 - 3568103 + G 77 -10 -3.16553 | overlap 3568087 TATGTTTTTCCATTT TGCGGT ATC ACCGCA TGTATTAATGGTTAT TERM 3979 3569040 - 3569051 + G 71 -4.4 -4.7629 | opp_overlap 3569040 TCTTTGCTAAAACCA GGTA TAAT TACC TTTTTCGCTTGCTCC Cphy_2908 3567690 - 3569219 + | polysaccharide biosynthesis protein TERM 3980 3569244 - 3569292 + T 95 -12.2 -3.75598 | gap 1, opp_overlap 3569251, overlap 3569251 TACATTTGGTTCTAT CATAAAAGTTGGGATATGTAAAT GCTA AATTACATATTCCAACTTTT-TG TTATTAAATTAATTC TERM 3981 3569251 - 3569286 + T 100 -11.4 -5.30348 | opp_overlap 3569251, overlap 3569244 GGTTCTATCATAAAA GTTGGGATATGTAAAT GCTA AATTACATATTCCAAC TTTTTGTTATTAAAT TERM 3982 3569286 - 3569251 - T 89 -9.2 -4.46212 | opp_overlap 3569251 3569244 GGTTCTATCATAAAA GTTGGGATATGTAAAT GCTA AATTACATATTCCAAC TTTTTGTTATTAAAT TERM 3983 3569503 - 3569457 - T 100 -14.9 -4.34267 | gap 1, opp_overlap 3569457 CGACATAATTTAAAA GAGATAGTTTGTTA-TTCTTTC AATT GAAAGGAGTAACAAACTATCTC TTTTTTTTACAAGGA TERM 3984 3569457 - 3569503 + T 100 -17.1 -5.75342 | gap 1, opp_overlap 3569457 CGACATAATTTAAAA GAGATAGTTTGTTATTC-TTTC AATT GAAAGGAGTAACAAACTATCTC TTTTTTTTACAAGGA Cphy_2909 3571480 - 3569537 - | hypothetical protein TERM 3985 3571668 - 3571651 - R 82 -7.7 -4.70583 | opp_overlap 3571650 3571651 3571653 CTTAGCAACATAAAA GAAGGGT ATAA ACCCCTC CTTTCAACTATTTTT Cphy_2910 3572451 - 3571870 - | hypothetical protein TERM 3986 3572179 - 3572194 + g 71 -4.8 -4.55128 | overlap 3572174 3572171 TTTTAGCTTTTCTTC TAAAGA TAAT TCTTTA TTTTCATTTCGAAAT TERM 3987 3572704 - 3572674 - R 88 -6.3 -5.4251 | gap 1, opp_overlap 3572674 CTGACACACAAAAAA CGACGGTTCTGA TCATTATT TCA-AACCGTCG TTTCCACTCTTTTTC TERM 3988 3572739 - 3572758 + r 74 -7.2 -4.05902 | TATTCTTATCACTAT CTACCTTA GAAA TGAGGTAG TTTAATTATCCTTTG Cphy_2911 3574168 - 3572903 - | cytochrome P450 TERM 3989 3573848 - 3573871 + g 76 -6.2 -4.62441 | gap 1, overlap 3573852 CCGATCCTGCTCTTC CTGATTCATGA TTG TCATGAAT-AG TTTCTTTCTGTGAAG TERM 3990 3574417 - 3574395 - R 100 -7.1 -5.35224 | opp_overlap 3574395 3574410 TTCATAAAAAGAAAA GATATCACC CCAAC GGTAATATC TTACTCTGTTTTGCA Cphy_2912 3575062 - 3574460 - | XRE family transcriptional regulator TERM 3991 3575079 - 3575104 + r 73 -7.7 -3.65446 | opp_overlap 3575079 3575098, overlap 3575075 CAAGCCACCTCCAAA CTTTTGATATG ATAA CCTATCAAAAG TTACTTCTTTACTTC TERM 3992 3575104 - 3575079 - R 73 -7.7 -3.58269 | opp_overlap 3575079 3575075, overlap 3575098 CAAGCCACCTCCAAA CTTTTGATATG ATAA CCTATCAAAAG TTACTTCTTTACTTC Cphy_2913 3575569 - 3575225 - | hypothetical protein Cphy_2914 3576487 - 3575690 - | pyrroline-5-carboxylate reductase TERM 3993 3576503 - 3576516 + r 77 -8.1 -3.91294 | overlap 3576502 AGCAACCTCGATTCT GACGC TTTA GCGTC TATTTATTTCCTTTA Cphy_2915 3578425 - 3576731 - | amine oxidase TERM 3994 3577590 - 3577569 - G 74 -4.3 -5.00765 | opp_overlap 3577573 AAGGAATTATAAAAA GAAAGGGGC AATT GCACCATTC CTCCTATTATCTCAT Cphy_2916 3578980 - 3578561 - | hypothetical protein Cphy_2917 3579290 - 3578946 - | hypothetical protein TERM 3995 3579735 - 3579701 - R 100 -16.1 -4.67982 | opp_overlap 3579706 3579709 3579734 TGTTAGTTAATAAAA TAATAGAACCTAATC GACTT GATTAGGTTCTATTA AAATTAAATTTTACT TERM 3996 3579706 - 3579730 + r 90 -12.3 -3.10236 | opp_overlap 3579701, overlap 3579709 GTTAATAAAATAATA GAACCTAATCG ACT TGATTAGGTTC TATTAAAATTAAATT TERM 3997 3579709 - 3579727 + r 75 -8.2 -3.69069 | opp_overlap 3579701, overlap 3579706 AATAAAATAATAGAA CCTAATCG ACT TGATTAGG TTCTATTAAAATTAA Cphy_2918 3580780 - 3579746 - | hypothetical protein TERM 3998 3580824 - 3580835 + H 70 -4.4 -4.85129 | TTGTTTCATTTCAAT TGTG GATC CACA TTTTTACTATATCAT TERM 3999 3581037 - 3581027 - H 74 -4 -5.15634 | opp_overlap 3581027 GAGCTTACGAAAAAA TGAA GCA TTCA TATGTGGGTTTGAGA TERM 4000 3581522 - 3581509 - g 70 -5.3 -4.41844 | opp_overlap 3581488, overlap 3581488 AAAACTCTTACAAAA GCTTT AACT AAAGC TAGTGCAGGAACAAC Cphy_2919 3581335 - 3582351 + | hypothetical protein TERM 4001 3582553 - 3582517 - T 100 -18.2 -4.21768 | opp_overlap 3582517 TAATTAAGGGTAAAA GCCGCTGTAGGTGATT ATAAG AATCAACTACAGCGGC TTTGAAATGATATCG TERM 4002 3582517 - 3582553 + T 100 -18.2 -3.63068 | opp_overlap 3582517 TAATTAAGGGTAAAA GCCGCTGTAGGTGATT ATAAG AATCAACTACAGCGGC TTTGAAATGATATCG Cphy_2920 3583891 - 3583103 - | hypothetical protein Cphy_2921 3585351 - 3584404 - | hypothetical protein TERM 4003 3585203 - 3585223 + gr 71 -8.5 -2.79749 | overlap 3585202 AATCTTAAAATTGCA TAAAAATCA AAT TGATTTTTA CTTCTATTAACACTA Cphy_2922 3587308 - 3585326 - | SNF2-related protein Cphy_2923 3588605 - 3587313 - | hypothetical protein Cphy_2924 3590222 - 3588609 - | DNA-cytosine methyltransferase Cphy_2925 3592003 - 3591098 - | homoserine O-succinyltransferase TERM 4004 3592555 - 3592541 - R 88 -7.2 -4.9725 | ATCTGTACAGAAAAA GTCTAA GCC TTAGAC AGACGAAAACGGATA TERM 4005 3593463 - 3593482 + r 73 -7.8 -3.57674 | overlap 3593461 TCATATCTTCTTTTT GAGCACCG ATAT CGATGCTC TATTTGTCATGCAGT Cphy_2927 3595572 - 3593611 - | DNA ligase, NAD-dependent Cphy_2928 3597197 - 3595764 - | pseudouridine synthase TERM 4006 3597297 - 3597273 - R 83 -4.4 -5.67283 | overlap 3597283 AATCCAAATAAAAAA TTTCATAGAA CCTAT TTCTAAGAAA TAAGCCTTCCAATAA TERM 4007 3597562 - 3597539 - R 73 -8.4 -3.54951 | opp_overlap 3597546 3597547, overlap 3597556 TATTTCACTATATAA TTTCATATTT CACG AAATATGAAA AGCTTATTTTCATAC Cphy_2929 3597977 - 3597747 - | hypothetical protein TERM 4008 3598192 - 3598222 + H 88 -6.9 -5.1971 | gap 1, opp_overlap 3598192, overlap 3598193 3598194 GTATTATTAAAAATC CG-CCGGTTAGGGA GTAA TCCTTAACCGGTCC TTTTTAATTTTTAGT TERM 4009 3598193 - 3598221 + H 87 -10.4 -3.69386 | gap 1, opp_overlap 3598192, overlap 3598192 3598194 TATTATTAAAAATCC G-CCGGTTAGGGA GTAA TCCTTAACCGGTC CTTTTTAATTTTTAG TERM 4010 3598194 - 3598219 + H 100 -14.1 -3.39564 | opp_overlap 3598192, overlap 3598193 3598192 ATTATTAAAAATCCG CCGGTTAGGGA GTAA TCCTTAACCGG TCCTTTTTAATTTTT TERM 4011 3599347 - 3599337 - g 81 -5.4 -5.12707 | TGAAATTTTAAAAAA CTGT GTT ACAG ATGCAAGTCTTCTTG Cphy_2930 3599017 - 3599754 + | hypothetical protein TERM 4012 3599852 - 3599866 + T 90 -10 -4.09685 | CCAGCTCTACCTCAT TGCCAC TAC GTGGCA TTTTAAAACATGCAA Cphy_2931 3600971 - 3600051 - | hypothetical protein TERM 4013 3600437 - 3600450 + g 70 -3.1 -4.98616 | CCATAGGTCGTATGA GAGCT GGAA AGTTC TTTTTAGTATTTTCC TERM 4014 3601566 - 3601542 - R 100 -8.7 -6.0427 | opp_overlap 3601545 AGTAGATAAAAAAAA CAATCGCAA GTTTCCA TTGCGATTG TAGAAATTTTTGATT Cphy_2932 3602392 - 3601595 - | hypothetical protein TERM 4015 3602317 - 3602290 - G 72 -8.4 -3.56161 | overlap 3602291 3602293 TAATCGAGGACACAA TCACTGGACCTC CAAA GATGTCCAGTGC TAAGAATGCTAGATA TERM 4016 3602316 - 3602291 - G 83 -11.9 -2.73214 | overlap 3602290 3602293 AATCGAGGACACAAT CACTGGACCTC CAAA GATGTCCAGTG CTAAGAATGCTAGAT Cphy_2933 3604077 - 3602434 - | diguanylate cyclase/phosphodiesterase TERM 4017 3602533 - 3602544 + g 74 -3 -5.29445 | TTTTCCACAGTTGAT TTCT TTTA AGAA TTTTTCTTGTTCCGA TERM 4018 3604557 - 3604571 + r 71 -8.6 -2.87553 | overlap 3604556 ACCAAGTCTATCGCA TGAAGC ATA GCTTCA CTTTAGAATTTTTGG Cphy_2934 3606101 - 3604722 - | putative oxidoreductase Cphy_2935 3607004 - 3606114 - | ferredoxin--NADP(+) reductase subunit alpha TERM 4019 3607738 - 3607728 - g 70 -5.4 -4.45473 | GGAATTAAAAAAAGA GTTG CAA CAAC AAGGCATGAGTTTTC Cphy_2936 3607450 - 3609303 + | asparagine synthase (glutamine-hydrolyzing) Cphy_2937 3610320 - 3609559 - | signal transduction histidine kinase regulating citrate/malate metabolism Cphy_2938 3611035 - 3610313 - | LytTR family two component transcriptional regulator Cphy_2939 3612014 - 3611076 - | band 7 protein Cphy_2940 3612456 - 3612016 - | hypothetical protein Cphy_2941 3614100 - 3612634 - | hypothetical protein TERM 4020 3614464 - 3614445 - g 79 -5 -5.09225 | ACTGGAGGCAAAAAA GGGAAAAA GCAT TCTCTCCC GCTTCCTTTCGCAAT Cphy_2942 3614314 - 3615204 + | ATPase, P-type (transporting), HAD superfamily, subfamily IC Cphy_2943 3615256 - 3615507 + | hypothetical protein TERM 4021 3615512 - 3615538 + T 86 -5.7 -5.47159 | opp_overlap 3615510 3615513 3615514, overlap 3615514 TGTTCAAATAAAATA AGGCCCCTCAG CATAA CCGAGGGGCTA TTTTTTATATTCCGA TERM 4022 3615537 - 3615513 - T 93 -9.9 -4.54026 | opp_overlap 3615512 3615514, overlap 3615510 3615514 GTTCAAATAAAATAA GGCCCCTCAGC ATA ACCGAGGGGCT ATTTTTTATATTCCG TERM 4023 3615536 - 3615514 - T 100 -13.4 -3.31331 | opp_overlap 3615512 3615514, overlap 3615513 3615510 TTCAAATAAAATAAG GCCCCTCAGC ATA ACCGAGGGGC TATTTTTTATATTCC TERM 4024 3615514 - 3615536 + T 95 -10.5 -4.36863 | opp_overlap 3615514 3615513 3615510, overlap 3615512 TTCAAATAAAATAAG GCCCCTCAG CATAA CCGAGGGGC TATTTTTTATATTCC Cphy_2944 3616220 - 3615543 - | hypothetical protein Cphy_2945 3616636 - 3616223 - | toxin secretion/phage lysis holin TERM 4025 3616662 - 3616677 + r 83 -10.4 -3.002 | opp_overlap 3616662, overlap 3616664 TCCGCATACAAAAAA GAGCGC CTAA GCGCTC TATGTATGCAATGAT TERM 4026 3616677 - 3616662 - R 100 -10.4 -5.36441 | opp_overlap 3616662 3616664 TCCGCATACAAAAAA GAGCGC CTAA GCGCTC TATGTATGCAATGAT Cphy_2946 3617200 - 3616865 - | hypothetical protein Cphy_2947 3618192 - 3617200 - | hypothetical protein Cphy_2948 3618608 - 3618204 - | hypothetical protein Cphy_2949 3619150 - 3618608 - | hypothetical protein Cphy_2950 3620219 - 3619140 - | baseplate J family protein Cphy_2951 3620614 - 3620222 - | phage protein Cphy_2952 3620937 - 3620614 - | hypothetical protein Cphy_2953 3621877 - 3620921 - | putative phage cell wall hydrolase Cphy_2954 3622733 - 3621795 - | peptidoglycan-binding LysM Cphy_2955 3624881 - 3622743 - | hypothetical protein Cphy_2956 3625501 - 3625070 - | XkdN-like protein TERM 4027 3625565 - 3625540 - R 95 -9 -5.07652 | TTTTTTAAAAGAAAA GACCCCTGTT AATTAA ATCAGGGGTC AAAGTATTAAAGCAT Cphy_2957 3626045 - 3625572 - | phage protein Cphy_2958 3627371 - 3626064 - | phage protein TERM 4028 3626874 - 3626844 - G 77 -10.4 -2.76492 | opp_overlap 3626844, overlap 3626843 GGACCCATTTGAAAG CGCAGTACCTGCAG TAA CAGTAAGTACTGCG TCTGATTTGAATTTC TERM 4029 3626844 - 3626874 + g 78 -10.4 -3.04853 | opp_overlap 3626844 3626843 GGACCCATTTGAAAG CGCAGTACCTGCAG TAA CAGTAAGTACTGCG TCTGATTTGAATTTC Cphy_2959 3627553 - 3627374 - | hypothetical protein Cphy_2960 3627985 - 3627560 - | phage protein TERM 4030 3627898 - 3627879 - G 100 -5 -6.14618 | opp_overlap 3627879 CACAAAATAAAAAAA CAAGGCTC TTCT AAACCTTG TTCAATAGATTCTGT Cphy_2961 3628440 - 3627982 - | phage protein Cphy_2962 3628814 - 3628440 - | phage protein Cphy_2963 3629158 - 3628811 - | hypothetical protein Cphy_2964 3630177 - 3629170 - | phage coat protein TERM 4031 3629223 - 3629233 + g 70 -6.8 -4.1413 | opp_overlap 3629223 GCTTAGGCTCATACA CTGG CTT CCAG TTTTCAGCATCTCTT Cphy_2965 3630799 - 3630197 - | hypothetical protein TERM 4032 3630710 - 3630727 + g 70 -5.6 -4.386 | overlap 3630724 TACTGCATGCTTTGG GAACTC TGTATT GAGTTC TTTTGTAAGAGCTTC TERM 4033 3630928 - 3630906 - R 88 -7.1 -4.96848 | TTCCGGACATAAAAA TAAGACGTA TACGC TACGTCTCA ATGCGAGATAAGAAG Cphy_2966 3631217 - 3630957 - | hypothetical protein Cphy_2967 3631768 - 3631397 - | hypothetical protein TERM 4034 3631801 - 3631774 - R 100 -11.4 -4.87665 | opp_overlap 3631773 3631776 3631779 TCCCAGGCATAAAAA TACCACCTACCG TTTA CGATAGATGGTA CGTTAATTGGATATA Cphy_2968 3632031 - 3631804 - | hypothetical protein Cphy_2969 3633593 - 3632037 - | SPP1 family phage head morphogenesis protein TERM 4035 3632616 - 3632628 + g 71 -9.1 -3.15809 | overlap 3632614 CACATTATGTGTCTT TCCGG TAA CCGGA TCTCTTGCTGCTCTT TERM 4036 3632972 - 3633009 + g 73 -3.3 -5.10033 | CACTTCCACGTATCA GCTGTTGCGTAAGCTCC GTAT GTAGCTCACGTATAAGC TTTTCTTTGTCTTGC Cphy_2970 3634968 - 3633580 - | SPP1 family phage portal protein TERM 4037 3633687 - 3633700 + g 71 -4.5 -4.88736 | CTTGGTCAGCATCTT CTACC CACG GGTGG TTTTTATGAATAGTC TERM 4038 3634305 - 3634295 - G 78 -6.8 -4.53707 | AAGAAAGGTATAAAA GGCA CCC TGCC ATAATCATGAATAAA Cphy_2971 3636634 - 3635219 - | phage uncharacterized protein TERM 4039 3635889 - 3635899 + g 72 -4 -5.00611 | GAAAGCACTTCACTA CAAA GCA TTTG TTTCTTTTCTTTATC TERM 4040 3636595 - 3636575 - G 90 -4 -5.88565 | CTGACAATAAAAAAA GAACTCAC GTCTT GCAAGTTC TATCTTTGCACCTAG Cphy_2972 3637196 - 3636624 - | hypothetical protein TERM 4041 3637255 - 3637230 - R 100 -7.7 -5.75538 | opp_overlap 3637230 TCTAAAAAATAAAAA GACCATATAGC CTAA ACTATATGATC TTAACTATTGGTGCA TERM 4042 3637546 - 3637530 - R 82 -6.5 -5.07652 | opp_overlap 3637525 3637532 TTTGGTAAAAGAAAA GAGCCTA CTA TTGGCTC TTAACAATTTGTTTC Cphy_2973 3637863 - 3637537 - | hypothetical protein TERM 4043 3637791 - 3637806 + g 70 -3.3 -5.06505 | CAAGTATATCGCAGA TTCCT CGTTTT AGGAA TTTTTCTATATCATT Cphy_2974 3638503 - 3637889 - | hypothetical protein TERM 4044 3638432 - 3638411 - G 74 -3.7 -5.22768 | gap 1, overlap 3638413 3638414 ATAAGAAAAAATAAA TATCCCCCAG TAT CCGGG-GACA AAATATTGAAGTATG TERM 4045 3639091 - 3639065 - R 82 -10.9 -2.7186 | overlap 3639053 AAATCGGTTCAATCA GCCACCGACCT TATTC AGGTCGATGAC CGCTAAATGGAAGTT Cphy_2975 3639698 - 3639201 - | hypothetical protein Cphy_2976 3639930 - 3640382 + | hypothetical protein TERM 4046 3640407 - 3640418 + F 83 -5.8 -5.31456 | GGGCTGTCTATATGG CAGC CCTC GCTG TTTTTTATCCCTTCA Cphy_2977 3641421 - 3642266 + | hypothetical protein TERM 4047 3642285 - 3642318 + T 100 -11.1 -4.2331 | TTTTTATTATTTATT TTCCCTCACTGTAAT ATTT GTTGCAGCGAGGGAA TTTCTAGTTTTACTT Cphy_2978 3642540 - 3642328 - | hypothetical protein TERM 4048 3642425 - 3642436 + g 71 -4.4 -4.79223 | TCTATATAACCAATC TGGT ACAT ACCA TTTTTAGTGATATAG Cphy_2979 3642954 - 3642565 - | transcriptional regulator, CdaR Cphy_2980 3643879 - 3643139 - | hypothetical protein Cphy_2981 3644262 - 3643882 - | hypothetical protein Cphy_2982 3645715 - 3644450 - | hypothetical protein TERM 4049 3645289 - 3645304 + g 88 -4.7 -5.5454 | TCACATCCGACTTAG GTTGC GATGTA GCAAC TTTTTCTTTCTTTGG Cphy_2983 3645974 - 3645696 - | hypothetical protein Cphy_2984 3648168 - 3646294 - | superfamily II helicase Cphy_2985 3648665 - 3648165 - | zinc finger CHC2-family protein TERM 4050 3648678 - 3648692 + r 74 -7.2 -4.13282 | CATTGCGTTCACCCA GGATTT CTA AAATCC TTTTACCGGTATCCT Cphy_2986 3649155 - 3648655 - | hypothetical protein Cphy_2987 3649600 - 3649175 - | single-strand binding protein Cphy_2988 3650316 - 3649600 - | hypothetical protein Cphy_2989 3651438 - 3650329 - | hypothetical protein Cphy_2990 3652079 - 3651441 - | hypothetical protein Cphy_2991 3652677 - 3652072 - | metal dependent phosphohydrolase Cphy_2992 3653081 - 3652818 - | AbrB family transcriptional regulator TERM 4051 3653134 - 3653164 + r 91 -8.4 -5.09521 | gap 1 TTATTTTTGTTTGTG CGCTAAGCTTGGA CGGCCA TCCA-GCTTGGCG TTTTTCATTTATTAA TERM 4052 3653913 - 3653924 + r 72 -5.8 -4.53163 | overlap 3653907 TTGTCCTACGCTTAA CTGC CTAA GCAG TTTTATCATCTGTCG Cphy_2993 3654415 - 3654197 - | putative phage-related DNA binding protein TERM 4053 3654438 - 3654457 + H 72 -8.6 -3.00498 | CTCCTTTCTATTTTT GTTTGCGG TAGT CCGTAAAC TATATCTAAAATATA Cphy_2994 3654603 - 3654932 + | XRE family transcriptional regulator TERM 4054 3655325 - 3655335 + G 70 -5.4 -4.37527 | opp_overlap 3655325 TTGTCTGACCAAGCA GCTA ACA TAGC TTTTGATGATTATAG Cphy_2995 3654965 - 3655618 + | hypothetical protein Cphy_2996 3655705 - 3656382 + | hypothetical protein TERM 4055 3656418 - 3656390 - f 100 -13.9 -5.68489 | TACAATAATAAAAAA CAGCCCCAGTGCT ACC AACACCGGGACTG CTCATAAGATATTAT TERM 4056 3656509 - 3656524 + F 72 -9 -2.73124 | opp_overlap 3656507, overlap 3656487 3656508 AAAAACAACACTACC GGGCAT TTTT ATGCCC ATTTACAGCATAGAA TERM 4057 3657179 - 3657193 + G 78 -5.8 -4.82901 | TCAAAAATACAATCT TCATAA AAG TTATGA TTTTTATCGCGAAAC Cphy_2997 3656562 - 3657896 + | resolvase domain-containing protein Cphy_2998 3657958 - 3659730 + | ATPase, P-type (transporting), HAD superfamily, subfamily IC Cphy_2999 3660447 - 3660007 - | thioesterase superfamily protein Cphy_3000 3661094 - 3660492 - | hypothetical protein TERM 4058 3661465 - 3661443 - R 100 -10.6 -4.81083 | opp_overlap 3661445, overlap 3661445 TGCAACCATTAAAAA TAGGAGGAGT TTA ACTCCTCCTT TTTTATGAAACTTCT TERM 4059 3661445 - 3661463 + r 100 -13.2 -5.25803 | opp_overlap 3661443 3661445 CAACCATTAAAAATA GGAGGAGT TTA ACTCCTCC TTTTTTATGAAACTT TERM 4060 3661463 - 3661445 - R 100 -13.2 -4.02049 | opp_overlap 3661445, overlap 3661443 CAACCATTAAAAATA GGAGGAGT TTA ACTCCTCC TTTTTTATGAAACTT TERM 4061 3661557 - 3661511 - R 100 -16.2 -3.55842 | opp_overlap 3661518, overlap 3661518 GACATAACATGATAA TTCAAAACAAGAAAAAGCACGC TAT ACGAACTTTTCCTTGTTTTGAA TATCACTAAGATTCT TERM 4062 3661550 - 3661518 - R 87 -8.5 -4.33151 | opp_overlap 3661518, overlap 3661511 CATGATAATTCAAAA CAAGAAAAAGCACGC TAT ACGAACTTTTCCTTG TTTTGAATATCACTA Cphy_3001 3662899 - 3661586 - | phosphopyruvate hydratase TERM 4063 3662529 - 3662515 - G 72 -7.8 -3.78811 | opp_overlap 3662515 3662514 ATAATGGAAGGGAAA CAGCAG TTG CTGCCG CTTTTGCTGTTGCAA TERM 4064 3662967 - 3662979 + r 100 -10.5 -5.13741 | TTATAACTTCATTTT GGCGC TTA GCGCC TTTTTATTGAATTGG TERM 4065 3663176 - 3663233 + r 100 -13.7 -2.95521 | gap 1, opp_overlap 3663182 3663224, overlap 3663222 TTACCTTATCACAAA CAAAAAGGGGTGTTGCAAAAATCA-TAC AAG GTAATGAGTTTTGCAACACCCCTTAGGG TATCATTCGTATAAA TERM 4066 3663227 - 3663182 - R 100 -20.1 -5.40464 | gap 1, opp_overlap 3663176 3663222, overlap 3663224 TATCACAAACAAAAA GGGGTGTTGCAAAAATCA-TAC AAG GTAATGAGTTTTGCAACACCCC TTAGGGTATCATTCG TERM 4067 3663358 - 3663348 - R 78 -6.8 -4.37886 | TTATCTTTGATAAAA GCAG TGA CTGC CTAAAATGTAATATT Cphy_3002 3664799 - 3663333 - | cell wall hydrolase SleB TERM 4068 3664480 - 3664466 - G 80 -8.6 -3.90112 | CCTCTTCCAATGAAA CATTGG AAT CCAATG CAGTATTGGAATTAA TERM 4069 3664947 - 3664964 + r 70 -6.3 -4.27467 | CAACCTTTGGTACAG GCTTCAG TTTT TTGAAGC TTTCTCTTAATCTTA Cphy_3003 3665893 - 3664994 - | GCN5-related N-acetyltransferase Cphy_3004 3666829 - 3665936 - | hypothetical protein TERM 4070 3666694 - 3666680 - G 71 -4.2 -4.80959 | TAAGGTACAATAAAA GCCATT CAC ATTGGC ACATAATAAATTATA TERM 4071 3667116 - 3667064 - R 100 -11 -4.27474 | overlap 3667085 AAATTCATGAAGAAA GCCGCATTTTTCTTCCAAA-AACA TGATAGT TGCTATCTGGAAGAAAAA-GCGGC AAATCGGAAAAAAGT Cphy_3005 3667765 - 3667133 - | CBS domain-containing protein Cphy_3006 3667934 - 3669322 + | argininosuccinate lyase TERM 4072 3669353 - 3669396 + T 93 -11.2 -4.12037 | opp_overlap 3669354, overlap 3669354 CTTTAACCTTAGTAG ACGGGGAGAAATGAAAAT CTTATTGT ATTTTCATTGCTCCCCGC TTTGTAATATTTCTA TERM 4073 3669354 - 3669395 + T 100 -14.7 -3.06138 | opp_overlap 3669354, overlap 3669353 TTTAACCTTAGTAGA CGGGGAGAAATGAAAAT CTTATTGT ATTTTCATTGCTCCCCG CTTTGTAATATTTCT TERM 4074 3669395 - 3669354 - T 100 -14.7 -2.80994 | opp_overlap 3669354 3669353 TTTAACCTTAGTAGA CGGGGAGAAATGAAAAT CTTATTGT ATTTTCATTGCTCCCCG CTTTGTAATATTTCT Cphy_3007 3671307 - 3669721 - | hypothetical protein Cphy_3008 3672045 - 3671335 - | ABC transporter related Cphy_3009 3674620 - 3672467 - | glycoside hydrolase family 3 protein TERM 4075 3674532 - 3674542 + g 74 -4 -5.2291 | overlap 3674536 GGTGCGGAATGTAAG GTTT GAA AAAC TTTTTCTTCTAGTGT Cphy_3010 3675599 - 3674634 - | endo-1,4-beta-xylanase TERM 4076 3676822 - 3676838 + G 72 -3.7 -4.93877 | overlap 3676820 3676834 TTTAAATGGTGCAGA GGGAA TTGATCC TTCCC TTTTCTTTGATGAAG Cphy_3011 3676460 - 3678076 + | Alpha-N-arabinofuranosidase TERM 4077 3678222 - 3678263 + T 100 -18.3 -5.13648 | opp_overlap 3678225, overlap 3678225 TTTCTTATACAAGAA AAAGCAAGTTGAACTAAGC TCCT GCTTGGTTCAACTTGCTTC TTTTGTTTGTCTTTA TERM 4078 3678260 - 3678225 - T 100 -17.8 -5.24796 | opp_overlap 3678222 3678225 CTTATACAAGAAAAA GCAAGTTGAACTAAGC TCCT GCTTGGTTCAACTTGC TTCTTTTGTTTGTCT TERM 4079 3678225 - 3678260 + T 100 -20 -4.60302 | opp_overlap 3678225, overlap 3678222 CTTATACAAGAAAAA GCAAGTTGAACTAAGC TCCT GCTTGGTTCAACTTGC TTCTTTTGTTTGTCT Cphy_3012 3679193 - 3678276 - | SufBD protein Cphy_3013 3679919 - 3679197 - | ABC transporter related Cphy_3014 3680746 - 3679913 - | acetyl esterase TERM 4080 3681299 - 3681320 + H 77 -4.5 -5.18726 | opp_overlap 3681302, overlap 3681302 ACATTGTTCCAACAC TAATCCATA GCAA TATGGAATA TTTTTATTATAAGGA TERM 4081 3681457 - 3681444 - g 70 -6.7 -4.1711 | ACCACTGTTAATAAA CTTCG TATT CGAAG CATGGTGGATCAAGG TERM 4082 3681779 - 3681795 + G 76 -4.5 -5.10033 | TGTTTATATTGTGAA TAAGATG TCT TATCTTA TTTTGTTTATCTTAC Cphy_3015 3681345 - 3682634 + | hypothetical protein TERM 4083 3682645 - 3682677 + T 100 -7.9 -5.42514 | opp_overlap 3682645 ACTAATGTTTCGAAA GAGAATTCTGC ATATTTTCAGA GCAGAATTCTC TTTTTTAGTTTATAA TERM 4084 3682677 - 3682645 - T 71 -7.9 -3.55801 | opp_overlap 3682645 ACTAATGTTTCGAAA GAGAATTCTGC ATATTTTCAGA GCAGAATTCTC TTTTTTAGTTTATAA Cphy_3016 3684088 - 3682757 - | magnesium transporter TERM 4085 3683267 - 3683237 - G 70 -8.4 -3.35467 | overlap 3683238 3683246 TGCAGAAAGCATTAA CGCTAATAACCATA CAA TACGGTTCTTAGCA TGCTGAAATACAGAA TERM 4086 3683266 - 3683238 - G 74 -9.7 -2.60798 | overlap 3683237 3683246 GCAGAAAGCATTAAC GCTAATAACCATA CAA TACGGTTCTTAGC ATGCTGAAATACAGA TERM 4087 3684442 - 3684402 - R 100 -12.7 -5.95946 | CCAATAATAAAAAAA GCCCTGCTCCCTTACCAAA ATC TTCGGCAAAAGAACAAGGC TTACGAATCCATATA TERM 4088 3684607 - 3684630 + r 71 -6.7 -4.15366 | TAGCAATCCATATCC CTGCGGTAG CCTCAC CTACCGAAG TTTAATTCTTTACAT Cphy_3017 3686032 - 3684713 - | dinitrogenase iron-molybdenum cofactor biosynthesis protein TERM 4089 3685168 - 3685186 + g 72 -8.2 -3.57387 | TATTTTTTGCTACTT TTGCTTCC ACT GGAAGTAA TTTAGCAAGTGTCTT Cphy_3018 3686427 - 3686029 - | hypothetical protein Cphy_3019 3688038 - 3686677 - | MATE efflux family protein TERM 4090 3688332 - 3688382 + r 100 -23.6 -3.31334 | opp_overlap 3688338, overlap 3688338 CCTTTACGTGACATT TTAAAACAGGGAAATCCCTCGCTT CTT AAGCGGGGGACTTCCCTGTTTTGG TTAAATTATATTTGG TERM 4091 3688376 - 3688338 - R 100 -22.6 -4.16943 | opp_overlap 3688338 3688332 CGTGACATTTTAAAA CAGGGAAATCCCTCGCTT CTT AAGCGGGGGACTTCCCTG TTTTGGTTAAATTAT TERM 4092 3688338 - 3688376 + r 100 -22.6 -4.46267 | opp_overlap 3688338, overlap 3688332 CGTGACATTTTAAAA CAGGGAAATCCCTCGCTT CTT AAGCGGGGGACTTCCCTG TTTTGGTTAAATTAT Cphy_3020 3689437 - 3688427 - | ketol-acid reductoisomerase Cphy_3021 3690017 - 3689517 - | acetolactate synthase, small subunit TERM 4093 3690146 - 3690162 + r 80 -5.2 -5.27938 | opp_overlap 3690148 ATTTCTCATTCATAT CATAAC CTTTA GTTATG TTTTTGTTTAAAGCT TERM 4094 3690351 - 3690325 - R 73 -4.4 -4.98531 | opp_overlap 3690325, overlap 3690319 GGTGTAAAGGAAAAA CGAGCGTATC GTCAATT GATATGCCCG TTTTATCACAATTTT Cphy_3022 3692338 - 3690365 - | heparinase II/III family protein TERM 4095 3692388 - 3692436 + r 90 -11.2 -3.78004 | opp_overlap 3692391 3692395, overlap 3692386 3692391 TTTATTTTAACCCAT TAAGGAAGTCCCCCTCTT CAAAACTAAGCGT AAGCGGGGGACTTCCTTG TCTTTGTTGTAGTAC TERM 4096 3692391 - 3692433 + r 91 -10.7 -4.00122 | opp_overlap 3692391 3692395, overlap 3692388 3692386 ATTTTAACCCATTAA GGAAGTCCCCCTCTT CAAAACTAAGCGT AAGCGGGGGACTTCC TTGTCTTTGTTGTAG TERM 4097 3692433 - 3692391 - R 83 -10.7 -3.22091 | gap 1, opp_overlap 3692391 3692388 3692386, overlap 3692395 ATTTTAACCCATTAA GGAAGTCCCCCTCTT-CA AAACTAAG CGTAAGCGGGGGACTTCC TTGTCTTTGTTGTAG Cphy_3023 3693836 - 3692529 - | Alpha-L-fucosidase TERM 4098 3692633 - 3692666 + g 73 -6.8 -4.19817 | opp_overlap 3692659 TAAACTTAGTTTCTG GATGCTTTCTTGGT CCAAGT GCCAAAGAAGCATC TTTTGCCTCACTACC TERM 4099 3693611 - 3693588 - G 74 -7.6 -3.92542 | gap 1, opp_overlap 3693603 3693609 CTTACTGTCAAACAA GCAAAA-ACCA TCA TGGTGTTTTGC TGTAAGCACTATATA Cphy_3024 3694824 - 3693829 - | phosphotransferase domain-containing protein Cphy_3025 3696154 - 3694886 - | major facilitator transporter Cphy_3026 3697156 - 3696167 - | phosphotransferase domain-containing protein TERM 4100 3697181 - 3697209 + r 76 -9.5 -3.00353 | overlap 3697186 CCTACTTTCTTATAT TCGAAGCGGATAC TCG GAGTCCGCTTCGC TACTTTCCTCATTAT TERM 4101 3697246 - 3697278 + r 100 -19.3 -3.53722 | opp_overlap 3697246 3697250, overlap 3697250 TGTCAGTATCCTAAA GAAAGCGCTGCCAAA TGC TCTGGCAGCGCTTTC TTATCTCAGTCTGGA TERM 4102 3697278 - 3697246 - R 100 -21.5 -3.62096 | opp_overlap 3697246 3697250, overlap 3697250 TGTCAGTATCCTAAA GAAAGCGCTGCCAAA TGC TCTGGCAGCGCTTTC TTATCTCAGTCTGGA TERM 4103 3697274 - 3697250 - R 100 -16.5 -4.44448 | opp_overlap 3697246 3697250, overlap 3697246 AGTATCCTAAAGAAA GCGCTGCCAAA TGC TCTGGCAGCGC TTTCTTATCTCAGTC TERM 4104 3697250 - 3697274 + r 100 -14.3 -4.39998 | opp_overlap 3697250 3697246, overlap 3697246 AGTATCCTAAAGAAA GCGCTGCCAAA TGC TCTGGCAGCGC TTTCTTATCTCAGTC Cphy_3027 3698733 - 3697330 - | extracellular solute-binding protein Cphy_3028 3700276 - 3698864 - | Alpha-L-fucosidase TERM 4105 3699424 - 3699397 - G 75 -8.6 -3.55453 | opp_overlap 3699411 3699412, overlap 3699393 3699398 TATCAAGAGAACGAA CTTTACCATCCT CTTC AGGATGATAAAA CCAGCCTGGTCTTAT TERM 4106 3699423 - 3699398 - G 74 -9.9 -2.72549 | opp_overlap 3699411 3699412, overlap 3699397 3699393 ATCAAGAGAACGAAC TTTACCATCCT CTTC AGGATGATAAA ACCAGCCTGGTCTTA Cphy_3029 3701468 - 3700293 - | glycosy hydrolase family protein Cphy_3030 3703697 - 3701523 - | hypothetical protein Cphy_3031 3704702 - 3703869 - | binding-protein-dependent transport systems inner membrane component Cphy_3032 3705639 - 3704716 - | binding-protein-dependent transport systems inner membrane component TERM 4107 3705818 - 3705791 - R 100 -9.3 -5.55001 | opp_overlap 3705791 3705795 GAACAAAAAAGAAAA GAAATCAGACA ATTTTA TGCCTGATTTC TTAATTCAATCTTAC Cphy_3033 3707731 - 3705830 - | histidine kinase internal region Cphy_3034 3709379 - 3707709 - | two component AraC family transcriptional regulator TERM 4108 3709550 - 3709595 + r 73 -7.6 -3.63394 | opp_overlap 3709553, overlap 3709552 3709553 3709555 CTTGAGACAGAGCCA AAAGAGCGTCACCAAAATAC TCTAAC GTTATTTGGTGACGCTCCTA TTCTAATATTTTATT TERM 4109 3709552 - 3709593 + r 82 -10.2 -3.37142 | opp_overlap 3709553, overlap 3709550 3709553 3709555 TGAGACAGAGCCAAA AGAGCGTCACCAAAATAC TCTAAC GTTATTTGGTGACGCTCC TATTCTAATATTTTA TERM 4110 3709592 - 3709553 - R 100 -13.7 -4.27259 | opp_overlap 3709552 3709550 3709553 3709555 GAGACAGAGCCAAAA GAGCGTCACCAAAATAC TCTAAC GTTATTTGGTGACGCTC CTATTCTAATATTTT TERM 4111 3709553 - 3709592 + r 100 -13.7 -2.61201 | opp_overlap 3709553, overlap 3709552 3709550 3709555 GAGACAGAGCCAAAA GAGCGTCACCAAAATAC TCTAAC GTTATTTGGTGACGCTC CTATTCTAATATTTT TERM 4112 3709555 - 3709590 + r 81 -10.5 -2.82988 | opp_overlap 3709553, overlap 3709553 3709552 3709550 GACAGAGCCAAAAGA GCGTCACCAAAATAC TCTAAC GTTATTTGGTGACGC TCCTATTCTAATATT Cphy_3035 3711676 - 3709613 - | hypothetical protein TERM 4113 3711434 - 3711444 + g 70 -6.8 -4.08064 | AAAACTGATTGCTAA CTCC ATT GGAG TTTTACCGAAACCTT Cphy_3036 3712064 - 3713209 + | ApbE family lipoprotein Cphy_3037 3714732 - 3713455 - | adenylosuccinate synthase TERM 4114 3714347 - 3714380 + g 70 -5.4 -4.51224 | AATGGAGCAATACCG GACTTTGTGGAA CCAAAAGATT TTCCACCAAGTC TTTCTTCTTCATATT TERM 4115 3714473 - 3714483 + g 74 -4 -5.14682 | ATTGGAACACCTTGA TCAA CAA TTGA TTTTATTTCTTCTAA TERM 4116 3714858 - 3714833 - R 100 -11.3 -5.95539 | opp_overlap 3714832 3714831 TTCTAAATAAAAAAA GCATTGTAACA GATT TGCTACAATGC CCTATTACTTAAGTA Cphy_3038 3715405 - 3714959 - | deoxyuridine 5'-triphosphate nucleotidohydrolase Dut TERM 4117 3715557 - 3715595 + r 76 -9.7 -3.0644 | opp_overlap 3715560, overlap 3715560 CAGTGTGAAGTTTTA GAATTTCTTAGGCAGCG TCTTT TGGTGCCTTAGAAATTC TCTTCACAATTACAT Cphy_3039 3717011 - 3715605 - | putative aminopeptidase 1 TERM 4118 3717116 - 3717090 - R 85 -11 -3.36965 | opp_overlap 3717090 3717096, overlap 3717096 CAAAACAAGTATCAA GTAAAAGTACAC TTC GTGAACTTTTAC TTTGAAGAATTACAA TERM 4119 3717090 - 3717116 + r 89 -11 -3.57561 | opp_overlap 3717090 3717096, overlap 3717096 CAAAACAAGTATCAA GTAAAAGTACAC TTC GTGAACTTTTAC TTTGAAGAATTACAA Cphy_3040 3718072 - 3717167 - | LysR family transcriptional regulator TERM 4120 3718098 - 3718124 + r 84 -11 -3.04248 | opp_overlap 3718103, overlap 3718103 TCCTACCAACAGGCT GTAAATTTGGGC TCA GCACAAATTTAC TATTGAAAAATCTTA TERM 4121 3718127 - 3718149 + r 100 -10.8 -4.55673 | opp_overlap 3718124 AGCACAAATTTACTA TTGAAAAATC TTA GATTTTTCAA TTTTCTCCTCTATTT Cphy_3041 3719544 - 3718159 - | aldehyde dehydrogenase Cphy_3042 3719789 - 3720238 + | hypothetical protein TERM 4122 3720382 - 3720343 - T 71 -2.1 -5.38951 | opp_overlap 3720369, overlap 3720344 3720346 AATTTACATAAAAAA TCACCACCCAGTAGC TTATAATACT GCCACTGAGTGGTTC ATTACTGTATATGTT TERM 4123 3720379 - 3720346 - T 73 -8.2 -3.48081 | opp_overlap 3720369, overlap 3720344 3720343 TTACATAAAAAATCA CCACCCAGTAGC TTATAATACT GCCACTGAGTGG TTCATTACTGTATAT Cphy_3043 3721830 - 3720397 - | adenylosuccinate lyase TERM 4124 3721311 - 3721340 + g 74 -5.2 -4.7373 | opp_overlap 3721308 3721307 3721311, overlap 3721315 GATCTTCCAAATCAA GAGCCAACTCT-TG TAGC CATAGAGTT-GCTC TTTTTCCTACGGTCG Cphy_3044 3723361 - 3721925 - | amidophosphoribosyltransferase TERM 4125 3723448 - 3723418 - R 87 -7.6 -4.85618 | gap 1, opp_overlap 3723417, overlap 3723413 3723410 3723409 AAATAAGTAACAAAA GGGGA-TGTCGCT TTTGTT AGCGTCAATCCCC CCTTTACATCATTGT Cphy_3045 3724177 - 3723470 - | phosphoribosylaminoimidazole-succinocarboxamide synthase Cphy_3046 3725189 - 3724548 - | hypothetical protein TERM 4126 3724771 - 3724785 + g 70 -3.5 -5.06103 | TCAAGATTTGCTTCC GGGTG TAGTT CATCC TTTTTTAAACCTTCT Cphy_3047 3726225 - 3725245 - | hypothetical protein TERM 4127 3725351 - 3725378 + g 72 -7.8 -3.74184 | opp_overlap 3725358, overlap 3725348 3725358 TTACTAATATTGGCT TCTGAAAGCTGT TGTA ACAGCTTTTTGA TTCTTACCTTAAATT TERM 4128 3725358 - 3725371 + g 82 -6.7 -4.99435 | opp_overlap 3725358, overlap 3725348 3725351 TATTGGCTTCTGAAA GCTGT TGTA ACAGC TTTTTGATTCTTACC Cphy_3048 3726751 - 3726218 - | anaerobic ribonucleoside-triphosphate reductase activating protein TERM 4129 3727294 - 3727279 - H 71 -5.4 -4.62957 | ATAAGCAAAGTAAAA CACATG CATA CATGCG TGCACAGGAATGAGG TERM 4130 3728260 - 3728248 - g 82 -7.7 -4.4009 | opp_overlap 3728250 3728251, overlap 3728250 TGTTATGTTAGAAAA TTCCG AGC CGGAA GGCTTACAGCTCGAT Cphy_3049 3727316 - 3728323 + | MerR family transcriptional regulator TERM 4131 3728811 - 3728775 - T 79 -6.8 -4.68994 | gap 2, opp_overlap 3728777 3728787 ATTATTAGTCAAAAA GAGTGTCAGAAG--TGTA ATA TACATTCATCTGACACTC TGCTAATGATAACAT TERM 4132 3728826 - 3728837 + T 88 -3 -6.4275 | opp_overlap 3728826, overlap 3728828 CTGCTAATGATAACA TTTG AAAA CAAA TTTTTTTTGTTTTTA Cphy_3050 3731098 - 3728972 - | anaerobic ribonucleoside triphosphate reductase Cphy_3051 3732554 - 3731415 - | carboxynorspermidine decarboxylase TERM 4133 3732697 - 3732667 - R 100 -11.3 -5.00616 | TCTTTTTCTAAAAAA GCAGTTGCAAAGT GTTTA AATTTGCAACTGC CCTACTGCCTTTAAT Cphy_3052 3733907 - 3732708 - | saccharopine dehydrogenase Cphy_3053 3734802 - 3733948 - | agmatinase TERM 4134 3734000 - 3734012 + g 74 -7.7 -3.8448 | opp_overlap 3733983 TTACACGCCAAAGCT GTGGA AGC TCCAC TTTGGTCATATATTG Cphy_3054 3735646 - 3734795 - | spermidine synthase Cphy_3055 3737142 - 3735685 - | Orn/Lys/Arg decarboxylase major region TERM 4135 3737488 - 3737476 - R 74 -9.1 -3.10017 | overlap 3737478 AATTCTCAACATATA GAGCG CAT CGCTC GGAGAGTAATTAGCC TERM 4136 3737632 - 3737590 - R 100 -10.3 -6.02914 | gap 2, opp_overlap 3737590 3737604 3737606 GGTACACAAAAAAAA GGACTTTTGC-AAA-AGATAG ATA CTATCTATTTTGCAAAAATCC CTATTTCGTAAAATC Cphy_3056 3739844 - 3737655 - | glycoside hydrolase clan GH-D TERM 4137 3739899 - 3739922 + r 80 -9.8 -3.44051 | opp_overlap 3739894 3739899 CACAGCCAAATTATA TGTGAAAAAT CATA ATTTTTCACA TTATCCTGCTAAAAA TERM 4138 3739922 - 3739899 - R 76 -9.8 -3.03038 | opp_overlap 3739899, overlap 3739894 CACAGCCAAATTATA TGTGAAAAAT CATA ATTTTTCACA TTATCCTGCTAAAAA TERM 4139 3739980 - 3739938 - R 100 -21 -4.57569 | opp_overlap 3739948 3739952 3739972, overlap 3739940 3739952 TTATCCTGCTAAAAA TATGTACAAAGAAAGCCTAA GTA TTAGGCTTTCTTTGTACATC AAATCTACAATTTTG TERM 4140 3739978 - 3739940 - R 100 -23.6 -3.90316 | opp_overlap 3739948 3739952 3739972, overlap 3739938 3739952 ATCCTGCTAAAAATA TGTACAAAGAAAGCCTAA GTA TTAGGCTTTCTTTGTACA TCAAATCTACAATTT TERM 4141 3739948 - 3739970 + r 100 -13.6 -3.92373 | opp_overlap 3739940 3739938 3739952, overlap 3739952 AAAAATATGTACAAA GAAAGCCTAA GTA TTAGGCTTTC TTTGTACATCAAATC TERM 4142 3739966 - 3739952 - R 89 -8.6 -4.58085 | opp_overlap 3739952 3739948, overlap 3739940 3739938 ATATGTACAAAGAAA GCCTAA GTA TTAGGC TTTCTTTGTACATCA TERM 4143 3739952 - 3739966 + r 89 -8.6 -4.57482 | opp_overlap 3739940 3739938 3739952, overlap 3739948 ATATGTACAAAGAAA GCCTAA GTA TTAGGC TTTCTTTGTACATCA Cphy_3057 3740526 - 3740098 - | CBS domain-containing protein TERM 4144 3740746 - 3740711 - R 77 -4 -5.47431 | gap 1 CTAACACAGAAAAAA CGGGATCAAACCATTGA AAT CCTCTGATTTG-TCCCG CTTTGTAAATTGCTG Cphy_3058 3741432 - 3740860 - | hypothetical protein TERM 4145 3741810 - 3741842 + r 100 -10.7 -5.85425 | opp_overlap 3741813 GTCCCTTACTATTGA CAAGAAAAAGCTAAC AAA GTGTGCTTTTTCTTG TTTTTTATTTATTTC Cphy_3059 3742309 - 3741851 - | hypothetical protein TERM 4146 3742195 - 3742180 - GR 85 -9 -4.07568 | opp_overlap 3742178 3742180 3742191 TGTTTTCTTTTAAAA GCTCCA TAAT TGGAGC TATTCCTCTTTTTTC TERM 4147 3742180 - 3742195 + gr 78 -9 -3.39574 | opp_overlap 3742180, overlap 3742178 3742191 TGTTTTCTTTTAAAA GCTCCA TAAT TGGAGC TATTCCTCTTTTTTC Cphy_3060 3742823 - 3742281 - | hypothetical protein Cphy_3061 3743941 - 3742826 - | aldo/keto reductase Cphy_3062 3745322 - 3744339 - | peptidase S8 and S53 subtilisin kexin sedolisin TERM 4148 3746306 - 3746278 - g 78 -10.3 -2.98387 | overlap 3746275 3746273 3746293 CTTCAGAAAATAGCA CTCGCCTTGGACA AAT TGCCAAAGGCGAA AAGCTTGAAATCTTA Cphy_3063 3745713 - 3746846 + | peptidase M23B TERM 4149 3746929 - 3746953 + T 100 -15.9 -5.80003 | opp_overlap 3746929 GAATTATAATAAAAA TGTGCACTTCA GCT TGAAGTGCACA TTTTTTGTTTATTCA TERM 4150 3746953 - 3746929 - T 100 -15.9 -5.24416 | opp_overlap 3746929 GAATTATAATAAAAA TGTGCACTTCA GCT TGAAGTGCACA TTTTTTGTTTATTCA Cphy_3064 3747933 - 3747277 - | hypothetical protein Cphy_3065 3748224 - 3747961 - | hypothetical protein TERM 4151 3748265 - 3748232 - R 72 -6 -4.47977 | opp_overlap 3748235, overlap 3748229 3748235 AATAACACAAAAGAA TAAGGGCCTCCTAC GGCAAT ATAGGAGCCCCTTT ATTTTCTATAAGTTT TERM 4152 3748235 - 3748262 + r 83 -7 -4.83243 | opp_overlap 3748232 3748229 3748235 AACACAAAAGAATAA GGGCCTCCTA CGGCAATA TAGGAGCCCC TTTATTTTCTATAAG TERM 4153 3748262 - 3748235 - R 80 -7.7 -4.30704 | opp_overlap 3748235, overlap 3748232 3748229 AACACAAAAGAATAA GGGCCTCCTAC GGCAAT ATAGGAGCCCC TTTATTTTCTATAAG Cphy_3066 3750080 - 3748299 - | ABC transporter related Cphy_3067 3751908 - 3750058 - | ABC transporter related TERM 4154 3750789 - 3750802 + g 72 -3.9 -4.9755 | GTTCCCCTTTGTTGA TCTTA AAGT TAAGA TTTTTAATTATGTAT Cphy_3068 3752993 - 3751920 - | ArsR family transcriptional regulator Cphy_3069 3754962 - 3753565 - | polysaccharide deacetylase TERM 4155 3755323 - 3755290 - R 88 -6.1 -5.49234 | opp_overlap 3755292, overlap 3755292 ATACTGAATAAAAAA GAGGAATCACCTATT TTAT AGTAGATGATTCCTT TTTTACGCAGTATTA TERM 4156 3755292 - 3755321 + r 95 -8.7 -5.02476 | opp_overlap 3755290 3755292 ACTGAATAAAAAAGA GGAATCACCTATT TTAT AGTAGATGATTCC TTTTTTACGCAGTAT TERM 4157 3755321 - 3755292 - R 88 -8.7 -4.37495 | opp_overlap 3755292, overlap 3755290 ACTGAATAAAAAAGA GGAATCACCTATT TTAT AGTAGATGATTCC TTTTTTACGCAGTAT Cphy_3070 3756117 - 3755455 - | V-type ATP synthase subunit D Cphy_3071 3757503 - 3756121 - | V-type ATP synthase subunit B Cphy_3072 3759272 - 3757503 - | H+transporting two-sector ATPase alpha/beta subunit central region TERM 4158 3757577 - 3757589 + g 78 -6.3 -4.81083 | CTCCATATACTTCCT GAAGA TTT TCTTC TTTTTCATACTTAAA Cphy_3073 3759608 - 3759273 - | V-type ATP synthase subunit F Cphy_3074 3760581 - 3759601 - | H+transporting two-sector ATPase C (AC39) subunit Cphy_3075 3761234 - 3760620 - | H+transporting two-sector ATPase E subunit TERM 4159 3760750 - 3760766 + g 73 -6.5 -4.29905 | opp_overlap 3760750 TCTAACAAAAATCCA CCGGTTA TAT TCACCGG TTCTTTTGCTATCGT Cphy_3076 3761766 - 3761254 - | V-type ATP synthase subunit K Cphy_3077 3763798 - 3761768 - | H(+)-transporting two-sector ATPase TERM 4160 3762321 - 3762331 + g 81 -4 -5.54907 | ACATCGTAAAGAACT GATT TAT AATC TTTTTGTTTTATACA TERM 4161 3763067 - 3763087 + g 100 -6.9 -5.45802 | opp_overlap 3763063 3763066, overlap 3763082 TTTTTCTGAAACTAG GATTTCTTC CTC GATGAAATC TTTTTCTTTTGCAGG TERM 4162 3763367 - 3763339 - G 100 -7.5 -5.77853 | overlap 3763341 AAGTGCCAAAAAAAA CAGCCGTACAG TTTGTTT CTGTACAGCTA AAAGGTATCGTAAGA TERM 4163 3763365 - 3763341 - G 82 -7.9 -4.52949 | overlap 3763339 GTGCCAAAAAAAACA GCCGTACAG TTTGTTT CTGTACAGC TAAAAGGTATCGTAA Cphy_3078 3764108 - 3763785 - | hypothetical protein TERM 4164 3763884 - 3763899 + g 70 -3.3 -4.91194 | TTCAATTTCCTTGTC TGCTT CCATCA AAGCA TTTTCTGTTTGTTGT TERM 4165 3764231 - 3764268 + r 100 -12.9 -5.11613 | gap 1, opp_overlap 3764231 GAAGCTGTTAAAAAA CTCCTGGAAATCCGAGTA AAT TATTCGGCTT-CCAGGAG TTTTTTAAATAATAT TERM 4166 3764268 - 3764231 - R 100 -12.9 -5.03145 | gap 1, opp_overlap 3764231 GAAGCTGTTAAAAAA CTCCTGGAAATCCGAGTA AAT TATTCGG-CTTCCAGGAG TTTTTTAAATAATAT Cphy_3079 3764658 - 3764287 - | hypothetical protein Cphy_3080 3767515 - 3764873 - | hypothetical protein TERM 4167 3765907 - 3765924 + g 70 -5.5 -4.48072 | opp_overlap 3765909, overlap 3765909 ATCCACCCATATCAT AACGCCA GCAG TGGCGTG TTTTATCATAAGTAT TERM 4168 3765922 - 3765909 - G 72 -8.1 -3.47573 | opp_overlap 3765907 3765909 CCACCCATATCATAA CGCCA GCAG TGGCG TGTTTTATCATAAGT TERM 4169 3765909 - 3765922 + g 77 -8.1 -3.84585 | opp_overlap 3765909, overlap 3765907 CCACCCATATCATAA CGCCA GCAG TGGCG TGTTTTATCATAAGT Cphy_3081 3771061 - 3767612 - | glycoside hydrolase family protein TERM 4170 3771362 - 3771329 - R 95 -9 -5.22289 | opp_overlap 3771329 3771328 3771326 3771341 CATTAAACATAAAAA GCTGCCACAAGA GAATATCTAT TCTTGTGACAGC CTATCTATTTCTACC TERM 4171 3771329 - 3771362 + r 71 -8.9 -2.53519 | opp_overlap 3771329, overlap 3771328 3771326 3771341 CATTAAACATAAAAA GCTGCCACAAGAGAA TATC TATTCTTGTGACAGC CTATCTATTTCTACC Cphy_3082 3771993 - 3771562 - | amino acid-binding ACT domain-containing protein Cphy_3083 3773280 - 3772009 - | phenylacetate--CoA ligase TERM 4172 3772430 - 3772409 - G 72 -8.1 -3.53811 | opp_overlap 3772418 TTTATGCTTGTTAAA TCCTTCGTT CGAT AACGAAAGA GTGGTAAGGCTTCTT Cphy_3084 3774659 - 3773475 - | IS605 family transposase OrfB Cphy_3086 3775286 - 3774879 - | amino acid-binding ACT domain-containing protein TERM 4173 3774947 - 3774962 + g 75 -5.4 -4.82901 | TATCATTAATGTTTA GTACCA TCAA TGGTGC TTTTTCTCCACGAAG Cphy_3087 3776042 - 3775467 - | indolepyruvate ferredoxin oxidoreductase Cphy_3088 3777794 - 3776055 - | indolepyruvate ferredoxin oxidoreductase, alpha subunit TERM 4174 3776332 - 3776348 + g 74 -9.5 -2.95652 | overlap 3776331 ACTATCTTTTCTAAC GCTTTTG TAT CAAAAGC ATTTACTTCGATAAC Cphy_3089 3778244 - 3778741 + | hypothetical protein Cphy_3090 3778886 - 3780412 + | Na+/solute symporter Cphy_3091 3781900 - 3780587 - | phenylacetate--CoA ligase TERM 4175 3782315 - 3782329 + G 83 -7.2 -4.81212 | GCGGCGGATGCTGGT GGATAA TTA TTATCC TTTTATTCTGCTGCG Cphy_3092 3782185 - 3782493 + | keratin associated protein 6-2-like protein TERM 4176 3782520 - 3782535 + F 100 -9 -5.626 | opp_overlap 3782520 AATTCCAGAAAAAAA GCTGCT CAAA AGCAGC TTTTTTTCTGCCGTA TERM 4177 3782535 - 3782520 - f 100 -9 -5.63504 | opp_overlap 3782520 AATTCCAGAAAAAAA GCTGCT CAAA AGCAGC TTTTTTTCTGCCGTA TERM 4178 3782648 - 3782669 + F 77 -2.9 -5.63517 | overlap 3782651 TTTTTTCATTGCTTC TTCGCAACC ACAA GGTTGCTTA TTTTTTATTTCAAAA TERM 4179 3782651 - 3782666 + F 93 -9 -4.88687 | overlap 3782648 TTTCATTGCTTCTTC GCAACC ACAA GGTTGC TTATTTTTTATTTCA TERM 4180 3783483 - 3783472 - g 74 -3 -5.26119 | opp_overlap 3783472, overlap 3783467 GTGCCAAAAAGAAAA CTTA ACTT TAAG TCCTCTTTGCATGCC Cphy_3093 3782954 - 3784057 + | chorismate synthase TERM 4181 3784073 - 3784106 + T 82 -7.7 -4.64598 | gap 1, opp_overlap 3784073 3784079, overlap 3784076 3784079 AATCTTGGGCAAAAA GTAGA-ACATAAAGTA ATT TACTTTATGTATCTTC TTTTTGCCCTCATTA TERM 4182 3784106 - 3784073 - T 82 -7.7 -4.57341 | gap 1, opp_overlap 3784073 3784076 3784079, overlap 3784079 AATCTTGGGCAAAAA GTAGA-ACATAAAGTA ATT TACTTTATGTATCTTC TTTTTGCCCTCATTA TERM 4183 3784076 - 3784103 + T 85 -8 -4.42748 | gap 1, opp_overlap 3784073 3784079, overlap 3784073 3784079 CTTGGGCAAAAAGTA GA-ACATAAAGTA ATT TACTTTATGTATC TTCTTTTTGCCCTCA TERM 4184 3784079 - 3784099 + T 84 -9.9 -3.47868 | opp_overlap 3784073 3784079, overlap 3784076 3784073 GGGCAAAAAGTAGAA CATAAAGTA ATT TACTTTATG TATCTTCTTTTTGCC TERM 4185 3784099 - 3784079 - T 86 -9.9 -3.75505 | opp_overlap 3784079 3784076 3784073, overlap 3784073 GGGCAAAAAGTAGAA CATAAAGTA ATT TACTTTATG TATCTTCTTTTTGCC Cphy_3094 3785759 - 3784185 - | methyl-accepting chemotaxis sensory transducer TERM 4186 3785496 - 3785508 + g 73 -6.3 -4.36931 | opp_overlap 3785495 3785496 TTCCCCCCTTAAAAC GGTAT TCG ATACC TTTTCATCTGCCTTC Cphy_3095 3786793 - 3786125 - | GntR family transcriptional regulator TERM 4187 3786889 - 3786846 - R 75 -9.8 -2.79684 | opp_overlap 3786846 3786847 3786849, overlap 3786843 GTATTAACGCAAGTA TGACAACCCCGTTGTTCT TTATTTGT ACAACAACGAGATTGTCA TTTATCCTATGTTAC Cphy_3096 3788064 - 3786901 - | isocitrate dehydrogenase (NAD(+)) TERM 4188 3788007 - 3788020 + g 72 -8.1 -3.59583 | overlap 3788016 CAACACGCTTTAATT GCTCC TCAA GGAGC TTTCCGAATGCTTCT Cphy_3097 3789532 - 3788120 - | pyruvate carboxyltransferase TERM 4189 3789683 - 3789672 - H 90 -5.8 -5.58454 | GTTATACGAAAAAAA GAGC CCTT GCTC GATAGTTAATTTATT TERM 4190 3790126 - 3790112 - g 74 -10 -2.59837 | overlap 3790111 ACTGTAAACTAAGAG TCTGGC TAT GCCAGA TAGCGAAAAATACTT Cphy_3098 3789949 - 3790422 + | ECF subfamily RNA polymerase sigma-24 factor Cphy_3099 3790419 - 3790856 + | hypothetical protein TERM 4191 3790900 - 3790951 + T 100 -15.5 -3.9122 | gap 1, opp_overlap 3790907 3790911, overlap 3790907 3790911 ATGCTGTAATGCCAG GAAGGTATAAAGGGGCTTTTGCAA TTATT TTGCATAAGCCCCTTTAT-CATTC TTATTTAGAAAACTC TERM 4192 3790907 - 3790945 + T 100 -17.7 -3.07355 | opp_overlap 3790907 3790911, overlap 3790900 3790911 AATGCCAGGAAGGTA TAAAGGGGCTTTTGCAA TTATT TTGCATAAGCCCCTTTA TCATTCTTATTTAGA TERM 4193 3790945 - 3790907 - T 100 -17.7 -2.57092 | opp_overlap 3790900 3790907 3790911, overlap 3790911 AATGCCAGGAAGGTA TAAAGGGGCTTTTGCAA TTATT TTGCATAAGCCCCTTTA TCATTCTTATTTAGA TERM 4194 3790941 - 3790911 - T 100 -14.1 -3.98826 | opp_overlap 3790907 3790900 3790911, overlap 3790907 CCAGGAAGGTATAAA GGGGCTTTTGCAA TTATT TTGCATAAGCCCC TTTATCATTCTTATT TERM 4195 3790911 - 3790941 + T 100 -14.1 -4.16767 | opp_overlap 3790911 3790907, overlap 3790907 3790900 CCAGGAAGGTATAAA GGGGCTTTTGCAA TTATT TTGCATAAGCCCC TTTATCATTCTTATT Cphy_3100 3791431 - 3790952 - | methylglyoxal synthase TERM 4196 3791485 - 3791473 - H 72 -4.8 -4.84017 | AACTTCTGATAAAAA GTGC GTTTA GCAC CGTAAAACTGTTTAT Cphy_3101 3791765 - 3792694 + | carbamate kinase TERM 4197 3792759 - 3792781 + T 85 -9 -4.09243 | opp_overlap 3792756 3792760 3792761, overlap 3792761 ACCTAAACCAAATTA ACGTGCGCCC GCT GGGCGCACTA TTTTAAAAACCTGTA TERM 4198 3792780 - 3792760 - T 95 -12.5 -3.65514 | opp_overlap 3792759 3792761, overlap 3792756 3792761 CCTAAACCAAATTAA CGTGCGCCC GCT GGGCGCACT ATTTTAAAAACCTGT TERM 4199 3792761 - 3792779 + T 100 -16 -3.6422 | opp_overlap 3792760 3792756 3792761, overlap 3792759 CTAAACCAAATTAAC GTGCGCCC GCT GGGCGCAC TATTTTAAAAACCTG TERM 4200 3792779 - 3792761 - T 100 -16 -2.78586 | opp_overlap 3792761 3792759, overlap 3792760 3792756 CTAAACCAAATTAAC GTGCGCCC GCT GGGCGCAC TATTTTAAAAACCTG TERM 4201 3792786 - 3792825 + T 100 -12.5 -5.46657 | opp_overlap 3792791, overlap 3792791 TGGGCGCACTATTTT AAAAACCTGTAAGTTAT CCACAC ATAACTTACAGGTTTTG TTTTTTGTTAACATA TERM 4202 3792791 - 3792820 + T 100 -12.4 -5.55001 | opp_overlap 3792791, overlap 3792786 GCACTATTTTAAAAA CCTGTAAGTTAT CCACAC ATAACTTACAGG TTTTGTTTTTTGTTA TERM 4203 3792820 - 3792791 - T 100 -12.4 -4.63527 | opp_overlap 3792791 3792786 GCACTATTTTAAAAA CCTGTAAGTTAT CCACAC ATAACTTACAGG TTTTGTTTTTTGTTA Cphy_3102 3793784 - 3792846 - | glycosyl transferase family protein TERM 4204 3792961 - 3792971 + g 78 -5.4 -4.90217 | ATCTTTAGATACTCT TCCA CGA TGGA TTTTTGATGTCTTTG TERM 4205 3793565 - 3793590 + g 78 -6.2 -4.84359 | opp_overlap 3793564, overlap 3793568 TTCCGTTTAGAAAGT TCTTCGTAAC ACCTAA GTTACGATGA TTTTTATAAAAGTGC Cphy_3103 3794788 - 3793820 - | glycosyl transferase family protein Cphy_3104 3796023 - 3794965 - | ABC transporter related TERM 4206 3795322 - 3795309 - G 88 -8.1 -4.60889 | AAGGAGTTGTAAAAA GCCGA TTCG TCGGC GCTATCTCAACAATC Cphy_3105 3797211 - 3796156 - | oligopeptide/dipeptide ABC transporter, ATPase subunit TERM 4207 3797396 - 3797421 + r 71 -7.7 -3.4033 | opp_overlap 3797392, overlap 3797392 3797395 TACGCAGGAACTTCT GTGTGAGAAAT CTTG ATTTTTCACGC TATTATCTGTGATTT Cphy_3106 3798398 - 3797424 - | binding-protein-dependent transport systems inner membrane component TERM 4208 3798258 - 3798234 - G 74 -2.9 -5.42164 | opp_overlap 3798234 3798236, overlap 3798228 3798236 GACAAACAAGAAAAA CATTGCAAA GCGATTT TTTGCAAAG GTTTTCCATGTGGTC TERM 4209 3798236 - 3798246 + g 70 -3.2 -5.01732 | opp_overlap 3798234 3798228 3798236, overlap 3798234 CAAACAAGAAAAACA TTGC AAA GCGA TTTTTTGCAAAGGTT Cphy_3107 3799337 - 3798399 - | binding-protein-dependent transport systems inner membrane component Cphy_3108 3801211 - 3799364 - | extracellular solute-binding protein TERM 4210 3801332 - 3801302 - R 100 -12.8 -3.77464 | opp_overlap 3801305, overlap 3801305 3801311 ATATGAGTTAGTAAA CAAGAAAAATACGC CTT GCATACTTTTCTTG ATATGAATTAAAAAT TERM 4211 3801329 - 3801305 - R 82 -8.7 -4.015 | opp_overlap 3801305, overlap 3801302 3801311 TGAGTTAGTAAACAA GAAAAATACGC CTT GCATACTTTTC TTGATATGAATTAAA TERM 4212 3801323 - 3801311 - R 77 -4.1 -5.39905 | opp_overlap 3801305, overlap 3801305 3801302 AGTAAACAAGAAAAA TACGC CTT GCATA CTTTTCTTGATATGA TERM 4213 3801891 - 3801880 - R 87 -4.4 -5.77988 | overlap 3801882 AGATATAGAAAAAAA GAGA AGAA TCTC CACGTCCTAGTTAGA Cphy_3109 3803957 - 3802071 - | glycoside hydrolase family protein TERM 4214 3802678 - 3802694 + g 79 -8.1 -4.1673 | opp_overlap 3802678 TGATACTTCGATACA TCAATTC CAT GAATTGA TTTCTTAACCCCTTG Cphy_3110 3804848 - 3803988 - | 5,10-methylenetetrahydrofolate reductase TERM 4215 3804803 - 3804821 + g 70 -8.2 -3.3341 | opp_overlap 3804798 GTGGAAATACCTCAA GGGAAAAT ACG GTTTTCCC TTGTCCGAACTTTTT Cphy_3111 3806074 - 3804902 - | sodium/hydrogen exchanger TERM 4216 3806147 - 3806110 - H 100 -9.9 -5.32699 | opp_overlap 3806110 3806144 TTAAATATCAAAAAA GCTGATTCCCCCTGTGA TAAT TCACAGAAGTCATCAGC TTTATAAGCAGTTTA TERM 4217 3806511 - 3806497 - H 70 -4.2 -4.95547 | opp_overlap 3806492 3806491 3806497, overlap 3806492 3806489 CTTAGAACAAGAAAA GTACGT AAC ACGAAC ATTTCCTTGTAGAAA TERM 4218 3806548 - 3806531 - H 74 -2.1 -5.60993 | CCTTGTAGAAAAAAA TATTATA CGAA TACAATA AAAGGAGTCTTATCT Cphy_3112 3806563 - 3807795 + | serine dehydratase alpha chain TERM 4219 3807942 - 3807908 - T 78 -9.5 -3.23045 | gap 1, opp_overlap 3807908, overlap 3807906 ATTGAGACATTAATA CTGCCAAGTGATAATC TTGT AACT-TCACTTGGCAG TCCTCTTATAAAAGG Cphy_3113 3809040 - 3807982 - | 2-nitropropane dioxygenase NPD Cphy_3114 3809895 - 3809245 - | HAD family hydrolase TERM 4220 3809912 - 3809933 + r 100 -12.3 -3.83502 | TTTTCCCTCATTTCT GCGCACGCA TGAA TGCGTGTGC TTTACTGTGCACATC Cphy_3115 3811973 - 3810153 - | ABC transporter related TERM 4221 3811908 - 3811918 + gr 83 -6.8 -4.89393 | opp_overlap 3811907 AATCCATATAATATT CGGA TGA TCCG TTTTTATCAGCTTTA Cphy_3116 3813780 - 3811948 - | ABC transporter related TERM 4222 3813653 - 3813639 - GR 73 -7.8 -3.57798 | TAGAAGGAAGTATAA TCCCGC AAA GCGGAA GTAATACATTAAAAA TERM 4223 3813920 - 3813894 - R 100 -8.1 -5.52384 | opp_overlap 3813912 TTTTTATTAAAAAAA GTGCACGAA TAGCTAAAT TTCGTGCAC GAGTGGTATTCTCTA Cphy_3117 3814961 - 3813933 - | signal transduction histidine kinase regulating citrate/malate metabolism Cphy_3118 3815668 - 3814958 - | LytTR family two component transcriptional regulator TERM 4224 3815978 - 3816022 + r 100 -16.9 -4.24397 | opp_overlap 3815981 3815986, overlap 3815981 TTTTTAAATTTTTAT AAAGTAAAGCTCTAAAATTGT ATT ATAATTTTAGAGCTTTACTTC TTTCTATTCACTTCT TERM 4225 3816019 - 3815981 - R 100 -16.4 -3.91072 | opp_overlap 3815978 3815981, overlap 3815986 TTAAATTTTTATAAA GTAAAGCTCTAAAATTGT ATT ATAATTTTAGAGCTTTAC TTCTTTCTATTCACT TERM 4226 3815981 - 3816019 + r 100 -18.6 -4.22375 | opp_overlap 3815981 3815986, overlap 3815978 TTAAATTTTTATAAA GTAAAGCTCTAAAATTGT ATT ATAATTTTAGAGCTTTAC TTCTTTCTATTCACT TERM 4227 3816014 - 3815986 - R 91 -10.5 -4.13995 | opp_overlap 3815981 3815978, overlap 3815981 TTTTTATAAAGTAAA GCTCTAAAATTGT ATT ATAATTTTAGAGC TTTACTTCTTTCTAT Cphy_3119 3816871 - 3816314 - | hypothetical protein Cphy_3120 3817190 - 3818044 + | AAA ATPase TERM 4228 3818099 - 3818153 + T 90 -3.8 -5.95539 | opp_overlap 3818105, overlap 3818105 TTTTCTTTGCCATAT AAAAAAGTGACTATGAAACCTTGT AGATAAA ATCAGGTTTGATAGTCACTTTCTA TTTTTTTATTTCCGA TERM 4229 3818147 - 3818105 - T 82 -5.1 -5.36441 | opp_overlap 3818099 3818105 TTGCCATATAAAAAA GTGACTATGAAACCT TGTAGATAAAATC AGGTTTGATAGTCAC TTTCTATTTTTTTAT TERM 4230 3818105 - 3818147 + T 86 -7.2 -4.74406 | opp_overlap 3818105, overlap 3818099 TTGCCATATAAAAAA GTGACTATGAAACCTTGT AGATAAA ATCAGGTTTGATAGTCAC TTTCTATTTTTTTAT Cphy_3121 3818723 - 3818169 - | rubrerythrin Cphy_3122 3819887 - 3819042 - | 2-oxoglutarate ferredoxin oxidoreductase subunit beta Cphy_3123 3821559 - 3819889 - | pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing protein TERM 4231 3821852 - 3821865 + r 85 -2.5 -6.12458 | AGTTTTCAAATTTTC TATTT AATC AAATA TTTTTTATTTTTTTA TERM 4232 3822079 - 3822050 - R 90 -12.2 -3.25072 | TTGAGGAGAAGTCAA CAGAGCTGTCAC TAAAGT GTGGCAGCTCTG CATAAAGGTAATATG Cphy_3124 3822668 - 3822207 - | GCN5-related N-acetyltransferase Cphy_3125 3823311 - 3822835 - | GCN5-related N-acetyltransferase TERM 4233 3823875 - 3823899 + r 95 -11.5 -3.7697 | opp_overlap 3823882, overlap 3823878 ATAATTTCTGTTTTG GGACTAATGCC TTT GGCATTAGTAC TTGTCTTGTAAATCT TERM 4234 3823878 - 3823896 + r 88 -11.8 -2.96991 | opp_overlap 3823882, overlap 3823875 ATTTCTGTTTTGGGA CTAATGCC TTT GGCATTAG TACTTGTCTTGTAAA Cphy_3127 3824749 - 3824057 - | metallophosphoesterase TERM 4235 3824895 - 3824879 - R 79 -3.7 -5.61881 | opp_overlap 3824879, overlap 3824873 TTTTAAAAACAAAAA TCTATGA ATA TCATGGA TTTCTATCAAGCACG Cphy_3128 3826232 - 3825009 - | UTP--glucose-1-phosphate uridylyltransferase Cphy_3129 3826854 - 3826384 - | hypothetical protein Cphy_3130 3827478 - 3826900 - | hypothetical protein TERM 4236 3827904 - 3827922 + r 72 -6 -4.36914 | opp_overlap 3827904 AAGCGCAACAAAAAA TCCCTTGA AAA TCAAGAGA TTTTGTAAACGCGAG TERM 4237 3827922 - 3827904 - R 100 -8.2 -5.4756 | opp_overlap 3827904 AAGCGCAACAAAAAA TCCCTTGA AAA TCAAGAGA TTTTGTAAACGCGAG Cphy_3131 3828224 - 3827961 - | hypothetical protein Cphy_3132 3829326 - 3828481 - | AraC family transcriptional regulator TERM 4238 3829172 - 3829193 + g 77 -10.3 -2.91467 | CGTTTCTTTATGTAT TTATAGGGT GTAT ACCCTATAA TCTGCTTAAAACTTT Cphy_3133 3829912 - 3829445 - | NUDIX hydrolase Cphy_3134 3830465 - 3829935 - | GCN5-related N-acetyltransferase TERM 4239 3830226 - 3830199 - G 76 -5 -5.00884 | gap 1 ATTCTTGTCAAAAAA CACTCCA-AAATC AAC GATCTCTGGAATG TTCTGATTGCCAAAA Cphy_3135 3831055 - 3830555 - | GCN5-related N-acetyltransferase Cphy_3136 3831648 - 3831211 - | NUDIX hydrolase Cphy_3137 3832056 - 3831670 - | hypothetical protein TERM 4240 3831979 - 3831991 + g 88 -7.7 -4.87786 | TTGATAGCCTATCTG GGCAT CAA ATGCC TTTTTATAAAATTCA TERM 4241 3832409 - 3832388 - R 83 -5.9 -5.15634 | opp_overlap 3832388 TAGGGCAGCAAAAAA TCCCTTG AAAAAAAA CAAGGGA TTTTGCAAACACGAG TERM 4242 3832446 - 3832463 + r 74 -6.3 -4.38748 | overlap 3832443 TTCGAATAAATCCAG GCACATA TGGA TGTGTGC TTATTTCTTTATCAA Cphy_3138 3833387 - 3832542 - | AraC family transcriptional regulator Cphy_3139 3834014 - 3833475 - | hypothetical protein Cphy_3140 3834538 - 3834071 - | hypothetical protein TERM 4243 3834553 - 3834563 + r 72 -2.6 -5.4387 | opp_overlap 3834553 TGATTACCTCCCAAA TAAA TAC TTTA TTTTTTGATTTATAT Cphy_3141 3835270 - 3834722 - | iron-sulfur cluster-binding protein TERM 4244 3834787 - 3834777 - G 74 -4 -5.1244 | CTATCAATACAAAAA CTTT CAG AAAG GGGATCCGACGTAAT Cphy_3142 3836242 - 3835337 - | AraC family transcriptional regulator TERM 4245 3835828 - 3835842 + g 71 -7.2 -3.83724 | opp_overlap 3835828 3835827 CGATTCCAAAAACAT CAAAAG CTT CTTTTG TTTCAATTCTGTAAT TERM 4246 3836897 - 3836879 - R 100 -11.8 -5.15634 | opp_overlap 3836879 CAGCGCATCAAAAAA TCCCTTGA AAA TCAAGGGA TTTCGTAAGCACGAG TERM 4247 3836879 - 3836897 + r 95 -11.8 -3.72576 | opp_overlap 3836879 CAGCGCATCAAAAAA TCCCTTGA AAA TCAAGGGA TTTCGTAAGCACGAG Cphy_3143 3838022 - 3837075 - | adenosine deaminase TERM 4248 3838195 - 3838253 + H 70 -7.2 -3.75669 | opp_overlap 3838203, overlap 3838196 CGATTGCCAACATAT TCCAATAACGGT-TACACATCACATTTT GATTA AAAATGT-ATGGGTAAACGGTTATTGGG ATTTTTTATGCCATT TERM 4249 3838196 - 3838252 + H 71 -8.5 -2.84317 | opp_overlap 3838203, overlap 3838195 GATTGCCAACATATT CCAATAACGGT-TACACATCACATTTT GATTA AAAATGT-ATGGGTAAACGGTTATTGG GATTTTTTATGCCAT Cphy_3144 3838619 - 3839500 + | hypothetical protein TERM 4250 3840157 - 3840143 - g 77 -2.8 -5.46657 | TATGCCAAGAAAAAA GGATTA ATC TTATCC AATCCATATGATGAT Cphy_3145 3839603 - 3840919 + | integrase family protein TERM 4251 3840940 - 3840905 - T 82 -6.3 -4.98531 | gap 1 TCCGGAAATGAAAAA TCGCCAGAAG-CCT GATAAATAA AGGACTTCTGACGA ATTAAGTTAAGCGCG TERM 4252 3841025 - 3841048 + T 100 -9.7 -5.68039 | CATCCACTTCTGATT TATGTGCAC ATAATA GTGCACATA TTTTTTTATGAATTT TERM 4253 3841109 - 3841086 - T 75 -8.2 -3.66908 | overlap 3841087 CTCTTTCAAAATCAA TGCGACAAAT TGGA ATTTGTCGCT CACATTTATATAATT TERM 4254 3841108 - 3841087 - T 88 -11.7 -2.79823 | overlap 3841086 TCTTTCAAAATCAAT GCGACAAAT TGGA ATTTGTCGC TCACATTTATATAAT Cphy_3146 3842027 - 3841155 - | hypothetical protein Cphy_3147 3842389 - 3842078 - | translation initiation inhibitor TERM 4255 3842825 - 3842869 + r 100 -10.2 -4.87892 | TAGTTGACGTGCACT GACTGATATGCATTGGCT AAGTCATAA AGCCACTGTGTATCAGTC TTTCTTTTGTTAAAG Cphy_3148 3843788 - 3842841 - | RNA-directed DNA polymerase (Reverse transcriptase) TERM 4256 3842929 - 3842941 + g 90 -9.1 -4.52857 | opp_overlap 3842916 AACCAATAACCTCTC CGGCT ATT AGCCG TTTTATATGCCAAGT TERM 4257 3843787 - 3843770 - G 73 -9.9 -2.55019 | opp_overlap 3843767 3843770, overlap 3843769 3843767 3843766 AACCGTAAAAAGTAG TGTGCAC ATAA GTGCACA TATTTACAAAACAAA TERM 4258 3843770 - 3843787 + g 78 -9.9 -3.34398 | opp_overlap 3843770 3843769 3843767 3843766, overlap 3843767 AACCGTAAAAAGTAG TGTGCAC ATAA GTGCACA TATTTACAAAACAAA TERM 4259 3843825 - 3843806 - R 100 -10.8 -5.86976 | TTACAAAACAAAAAA TCCCTTGA AAAA TCAAGGGA TAAAGTAAGCACGAG Cphy_3149 3844839 - 3844123 - | cyclic nucleotide-binding protein TERM 4260 3844361 - 3844375 + g 72 -3.6 -5.00616 | ATATGTTCCATCTTC TGTGTT AAT AATACA TTTTTTACAGCAAGA TERM 4261 3844495 - 3844474 - G 79 -7.4 -4.37199 | overlap 3844484 ACGATAATCAAGAAA CATTACAG TACAGT CTGTAATG GCTACAACCTGGAAT Cphy_3150 3845084 - 3845812 + | 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein TERM 4262 3845906 - 3845858 - f 89 -12.1 -3.28712 | opp_overlap 3845853 3845860, overlap 3845860 3845863 3845866 TTCTTTCTCCTACAA GACAACAAGCTGTTATCAA TCTCATTTCCT TTGATAACAGCTTGTTGTT TATACTTTTCTAAAT TERM 4263 3845860 - 3845904 + F 100 -14.7 -4.2408 | opp_overlap 3845860 3845858 3845863 3845866, overlap 3845853 CTTTCTCCTACAAGA CAACAAGCTGTTATCAA TCTCATTTCCT TTGATAACAGCTTGTTG TTTATACTTTTCTAA TERM 4264 3845904 - 3845860 - f 100 -14.7 -3.21276 | opp_overlap 3845853 3845860, overlap 3845858 3845863 3845866 CTTTCTCCTACAAGA CAACAAGCTGTTATCAA TCTCATTTCCT TTGATAACAGCTTGTTG TTTATACTTTTCTAA TERM 4265 3845901 - 3845863 - f 87 -10.6 -3.7511 | opp_overlap 3845860 3845853, overlap 3845860 3845858 3845866 TCTCCTACAAGACAA CAAGCTGTTATCAA TCTCATTTCCT TTGATAACAGCTTG TTGTTTATACTTTTC TERM 4266 3846375 - 3846351 - f 91 -7.9 -5.24989 | opp_overlap 3846351 GCATATATTAAAAAA GCACTTCTGAA AAT TACAGAAATGC TGTCGTTCCTCTTAC TERM 4267 3846671 - 3846644 - f 72 -8.6 -3.03002 | opp_overlap 3846652, overlap 3846641 3846637 3846652 AAATACAGGAAATTA TGGTATAATGTC GATA GACATTATACTA GCCATGCAAAGTGAG TERM 4268 3846733 - 3846723 - f 77 -8.2 -3.94067 | opp_overlap 3846723 3846720 GAGTACACATAATAA GCGC AAA GCGC TGCTTACTATATGAG Cphy_3151 3846872 - 3847669 + | pyrroline-5-carboxylate reductase TERM 4269 3847745 - 3847688 - T 90 -10 -4.09374 | opp_overlap 3847690, overlap 3847690 AAGATATAATAACAA TACCCCTCCATTTGCTACTAGGCT TTTATCTTTC AGCTTAGTCGTAAATGGAGGGGTT TGTTAAATGAAGACT TERM 4270 3847690 - 3847743 + T 100 -17 -4.20516 | opp_overlap 3847690 3847688 GATATAATAACAATA CCCCTCCATTTGCTACTAGGCT TTTATCTTTC AGCTTAGTCGTAAATGGAGGGG TTTGTTAAATGAAGA TERM 4271 3847743 - 3847690 - T 95 -12.6 -3.61971 | opp_overlap 3847690, overlap 3847688 GATATAATAACAATA CCCCTCCATTTGCTACTAGGCT TTTATCTTTC AGCTTAGTCGTAAATGGAGGGG TTTGTTAAATGAAGA Cphy_3152 3848593 - 3847835 - | methyltransferase type 11 TERM 4272 3848674 - 3848700 + r 74 -5.2 -4.81685 | gap 2, opp_overlap 3848674 TCATGAACTCAAAAA GCACACCAAGGC TTTGT GCC--GGTGTGC TTTTTCCTAATTCAT TERM 4273 3848700 - 3848674 - R 74 -5.2 -4.7629 | gap 2, opp_overlap 3848674 TCATGAACTCAAAAA GCACACCAAGGC TTTGT GCC--GGTGTGC TTTTTCCTAATTCAT Cphy_3153 3849357 - 3848911 - | RbsD or FucU transport Cphy_3154 3850975 - 3849506 - | carbohydrate kinase FGGY TERM 4274 3850847 - 3850876 + g 76 -9.3 -3.30006 | opp_overlap 3850847 TAACGTCTGATTTAA CTGCACCGGCT CATTTAAA AACCGGTGCAG TTCCTCTAACTTAAT TERM 4275 3850876 - 3850847 - G 85 -12.2 -3.06133 | opp_overlap 3850847 TAACGTCTGATTTAA CTGCACCGGCTC ATTTAA AAACCGGTGCAG TTCCTCTAACTTAAT Cphy_3155 3852772 - 3850979 - | L-fucose isomerase TERM 4276 3852852 - 3852887 + H 86 -11.3 -2.6472 | gap 1, opp_overlap 3852884, overlap 3852855 3852884 CTTAGTAGTAGGCCG GAAGTTTGTGCC-GAG GACGA CGCAGGCACAAACTTC TAGTGTGAAGTCTTA TERM 4277 3852903 - 3852941 + H 84 -11.1 -3.04263 | opp_overlap 3852906, overlap 3852906 TAGTGTGAAGTCTTA GAATTTCTTAGGCGGCG TCTTT TGGCGCCTTAGAAATTC TCTTCACACTACCCT Cphy_3156 3853035 - 3853886 + | AraC family transcriptional regulator TERM 4278 3853973 - 3853927 - T 85 -6.8 -5.10064 | opp_overlap 3853930, overlap 3853930 CTTAAGACATAAAAA TAACCCCTTTCATTAGAC ATTGTCTTTTG GTCTAACAAAAGGGGTTC ACTTCAAAATAGGGT TERM 4279 3853970 - 3853930 - T 89 -8.5 -4.62708 | opp_overlap 3853930, overlap 3853927 AAGACATAAAAATAA CCCCTTTCATTAGAC ATTGTCTTTTG GTCTAACAAAAGGGG TTCACTTCAAAATAG Cphy_3157 3854650 - 3854096 - | hypothetical protein TERM 4280 3855284 - 3855263 - R 74 -8.9 -3.14564 | opp_overlap 3855268, overlap 3855268 TCATTTTTTTACTAA TGAAAGAAA GTTA TTTCTTTCA TAAACTGCAAAAAAA TERM 4281 3855300 - 3855325 + r 93 -6.2 -5.60993 | opp_overlap 3855300 TAAACTGCAAAAAAA TATTAGCGGG TTTTAT CCCACTAATA TTTTTTTGTAAACCC TERM 4282 3855325 - 3855300 - R 100 -8.4 -5.49809 | opp_overlap 3855300 TAAACTGCAAAAAAA TATTAGCGGG TTTTAT CCCACTAATA TTTTTTTGTAAACCC Cphy_3158 3857410 - 3855356 - | Alpha-glucuronidase TERM 4283 3856064 - 3856079 + g 70 -2.5 -5.08601 | overlap 3856065 CCCTGTATTTGCAAC TGCTG CCATTC CAGCG TTTTTATTGCCATAA TERM 4284 3857318 - 3857298 - G 81 -9.1 -4.17023 | opp_overlap 3857301, overlap 3857301 GTAACGACTGTAAAA TAATCTCGC ATC GCAAGATTA TCACTCTTATAGTAA TERM 4285 3857315 - 3857301 - G 73 -6.4 -4.20148 | opp_overlap 3857301, overlap 3857298 ACGACTGTAAAATAA TCTCGC ATC GCAAGA TTATCACTCTTATAG TERM 4286 3857465 - 3857489 + H 72 -7.3 -3.90744 | opp_overlap 3857469 3857470, overlap 3857469 AGGTCGACGCAGGCA CAAACTTCT GTGTGTA AGAAGTTTG TTCTTTCACACAGAA TERM 4287 3857505 - 3857469 - H 83 -9.6 -3.92869 | opp_overlap 3857469 3857465, overlap 3857470 CGACGCAGGCACAAA CTTCTGTGTGTAAGAA GTTTG TTCTTTCACACAGAAC CCTAAACTCATTATC TERM 4288 3857504 - 3857470 - H 100 -13.1 -2.954 | opp_overlap 3857469 3857465, overlap 3857469 GACGCAGGCACAAAC TTCTGTGTGTAAGAA GTTTG TTCTTTCACACAGAA CCCTAAACTCATTAT Cphy_3159 3857841 - 3858731 + | AraC family transcriptional regulator TERM 4289 3860780 - 3860792 + G 74 -7.7 -3.86346 | CAATGGTACATTTAT TCCCA TAC TGGGA TTTCTCCAAAGATCA TERM 4290 3860832 - 3860853 + G 70 -2.9 -5.14563 | CTTAAGGGTATGCTC CAATGCCCC AAGA GTGGAATTG TTTTTTAATGAAAAC Cphy_3160 3858979 - 3862536 + | glycoside hydrolase family protein TERM 4291 3863000 - 3863048 + T 95 -9.2 -5.10968 | gap 1, opp_overlap 3862995 3863000 TCTCATTTAACAAAA TCCATGAAACTTATTAAAGGC TTACCATT GCCT-TAATGCGTTTCATGGA TTTTTGTATCTTGAT TERM 4292 3863048 - 3863000 - T 79 -7 -4.67982 | gap 1, opp_overlap 3863000, overlap 3862995 TCTCATTTAACAAAA TCCATGAAACTTATTAAAGGC TTACCATT GCCT-TAATGCGTTTCATGGA TTTTTGTATCTTGAT Cphy_3161 3863939 - 3863088 - | degV family protein Cphy_3162 3864546 - 3864223 - | regulatory protein, LuxR Cphy_3163 3865729 - 3864737 - | leucyl aminopeptidase (aminopeptidase T)-like protein TERM 4293 3865963 - 3865939 - H 74 -9.5 -2.60802 | opp_overlap 3865946, overlap 3865927 3865944 3865946 3865955 AAATATATCAAGTTA TGATATATCCA TAA TAGATATATCA AGTATGGATATATCG Cphy_3164 3865992 - 3866324 + | PadR-like family transcriptional regulator Cphy_3165 3866331 - 3866879 + | hypothetical protein TERM 4294 3866997 - 3867033 + T 93 -9.6 -4.57474 | opp_overlap 3866997 TTTGTGTTTTCTAAA GGCGATAGAAAGCA AATCAATCA TTCTTTCTATCGCC TTTTATATAAATTCA TERM 4295 3867033 - 3866997 - T 80 -9.6 -3.53012 | opp_overlap 3866997 TTTGTGTTTTCTAAA GGCGATAGAAAGCA AATCAATCA TTCTTTCTATCGCC TTTTATATAAATTCA Cphy_3166 3867419 - 3867087 - | branched-chain amino acid transport Cphy_3167 3868087 - 3867410 - | AzlC family protein TERM 4296 3867861 - 3867845 - G 72 -8.1 -3.62535 | GGAAATACCATAGAA TAAATGC CTG GCATTTA CCATAATACTAAGTA Cphy_3168 3868708 - 3868097 - | hexapaptide repeat-containing transferase Cphy_3169 3869471 - 3868776 - | hypothetical protein Cphy_3170 3870927 - 3869461 - | putative abortive phage resistance TERM 4297 3870301 - 3870284 - G 81 -2.8 -5.75342 | overlap 3870265 TCTTTTGAAAAAAAA TAAGAA ATACTA TTCTTA TATGACTTACTTAGT TERM 4298 3870682 - 3870661 - G 93 -12.3 -3.8822 | opp_overlap 3870670 CACACTAAATTCAAA CGAGCAGAC TGCT GCCTGCTCG CCGCATTTTATCATA Cphy_3171 3872483 - 3870966 - | 2-isopropylmalate synthase TERM 4299 3872602 - 3872564 - R 100 -9.8 -5.09426 | gap 1, opp_overlap 3872564 CTTAAGGTTAAAAAA TCCCCCAA-TCGTCT TAAGATTAAG AGACGAATTGGGGGA TTTCCGCGGTACCAC TERM 4300 3872564 - 3872602 + r 85 -10.5 -3.55444 | gap 1, opp_overlap 3872564 CTTAAGGTTAAAAAA TCCCCCAA-TCGTCTT AAGATTAA GAGACGAATTGGGGGA TTTCCGCGGTACCAC TERM 4301 3872668 - 3872691 + r 78 -9.6 -3.31269 | opp_overlap 3872668 3872686 CATTCCATAAAAAAA CTTCTGCCTC CAAA GAGACAGAAG TTACTCTGCTATACC TERM 4302 3872691 - 3872668 - R 100 -11.8 -5.626 | opp_overlap 3872668, overlap 3872686 CATTCCATAAAAAAA CTTCTGCCTC CAAA GAGACAGAAG TTACTCTGCTATACC Cphy_3172 3874426 - 3873050 - | tryptophan synthase subunit beta TERM 4303 3874454 - 3874472 + r 80 -6 -4.93547 | TTTCAATCATCTGTA GAGCGAAA GAT TTTCACTC TTTTTAATTGGTTCG TERM 4304 3874648 - 3874608 - R 90 -4.2 -5.97575 | gap 1 AAGGTACAAAAAAAA TACCCTTATCCCATACAAA TAAA TCTGCA-GGGACAAAAGTA TCGAACTTCTGCGGT Cphy_3173 3876260 - 3874914 - | MATE efflux family protein TERM 4305 3875160 - 3875179 + g 78 -8.6 -3.76952 | opp_overlap 3875160 3875159 TACTAGAAAATAAGC TGGTACGA TATT TCGTGCCA TTTCGCTTCCATAAG TERM 4306 3876308 - 3876348 + H 100 -7.8 -5.75478 | gap 1, opp_overlap 3876309 3876311 3876315, overlap 3876309 3876311 3876315 GCATGGTATCAGCAA AG-AGAAACATAAGGTCAT AAAT ATGCCCTTATGTTTCTACA TTTTTTTCTATCATT TERM 4307 3876346 - 3876309 - H 95 -11.5 -3.79251 | opp_overlap 3876308 3876309 3876311 3876315, overlap 3876311 3876315 CATGGTATCAGCAAA GAGAAACATAAGGTCAT AAAT ATGCCCTTATGTTTCTA CATTTTTTTCTATCA TERM 4308 3876309 - 3876347 + H 100 -11.3 -4.02846 | gap 1, opp_overlap 3876309 3876311 3876315, overlap 3876308 3876311 3876315 CATGGTATCAGCAAA G-AGAAACATAAGGTCAT AAAT ATGCCCTTATGTTTCTAC ATTTTTTTCTATCAT TERM 4309 3876311 - 3876344 + H 100 -14.1 -3.03441 | opp_overlap 3876309 3876311 3876315, overlap 3876309 3876308 3876315 TGGTATCAGCAAAGA GAAACATAAGGTCAT AAAT ATGCCCTTATGTTTC TACATTTTTTTCTAT TERM 4310 3876344 - 3876311 - H 100 -14.1 -3.48024 | opp_overlap 3876311 3876309 3876308 3876315, overlap 3876309 3876315 TGGTATCAGCAAAGA GAAACATAAGGTCAT AAAT ATGCCCTTATGTTTC TACATTTTTTTCTAT TERM 4311 3876315 - 3876340 + H 85 -9.1 -4.13225 | opp_overlap 3876311 3876309 3876315, overlap 3876311 3876309 3876308 ATCAGCAAAGAGAAA CATAAGGTCAT AAAT ATGCCCTTATG TTTCTACATTTTTTT TERM 4312 3876340 - 3876315 - H 89 -9.1 -4.37506 | opp_overlap 3876315 3876311 3876309 3876308, overlap 3876311 3876309 ATCAGCAAAGAGAAA CATAAGGTCAT AAAT ATGCCCTTATG TTTCTACATTTTTTT TERM 4313 3876841 - 3876811 - H 74 -9.1 -3.11208 | opp_overlap 3876811, overlap 3876808 CTTCATTGAAAAGTA TCGCTAATCCTTA TAAAT CAAGGGTTAGCGA TTTTTTGTTGCTTGA TERM 4314 3876811 - 3876841 + H 100 -10.6 -5.5604 | opp_overlap 3876811 3876808 CTTCATTGAAAAGTA TCGCTAATCCTT ATAAATC AAGGGTTAGCGA TTTTTTGTTGCTTGA TERM 4315 3876870 - 3876886 + H 74 -6.6 -4.18018 | GAAAACTTGTGTGCG GGATGT GTGCA ACATCC TTTTACATACGGAGA TERM 4316 3877384 - 3877335 - H 100 -16.2 -5.52384 | gap 1, opp_overlap 3877335 CTTTGATGAAAAAAA GACATGATAACCGTTTACTCGTA AATGG TACTAGTAAAC-GTTATCATGTC TTTTCGGAGAGGTGT TERM 4317 3877335 - 3877384 + H 100 -16.2 -4.08394 | gap 1, opp_overlap 3877335 CTTTGATGAAAAAAA GACATGATAACCGTTTACTCGTA AATGG TACTAGTAAAC-GTTATCATGTC TTTTCGGAGAGGTGT Cphy_3174 3877669 - 3878511 + | AraC family transcriptional regulator TERM 4318 3878635 - 3878606 - T 93 -6.5 -5.55769 | TTCTAGAATAAAAAA GCACACATCCC ATATAACA AGAATGTGTGC AACCATGTGTGCAGA TERM 4319 3878811 - 3878832 + T 100 -10.9 -4.33248 | opp_overlap 3878800 3878799 3878811, overlap 3878828 AAATGTATTAGATAA TGCGATCAC ATTT GTGGTCGCA TTTCTTATGCGATTC TERM 4320 3878832 - 3878811 - T 76 -8.7 -3.56562 | opp_overlap 3878811 3878828, overlap 3878800 3878799 AAATGTATTAGATAA TGCGATCAC ATTT GTGGTCGCA TTTCTTATGCGATTC Cphy_3175 3879739 - 3878837 - | integrase catalytic region TERM 4321 3878867 - 3878892 + g 70 -2.7 -5.20781 | gap 1, overlap 3878870 CTTTTTCTTTGCTTC TAATTC-TGCTT TAT AAGCAAGAATTC TTTTGTTTTCTGGTA Cphy_3176 3880500 - 3879814 - | transposase IS3/IS911 family protein TERM 4322 3880508 - 3880554 + r 87 -11.7 -2.64973 | opp_overlap 3880508, overlap 3880513 3880525 TTAGACATAATAAAA TCCCTCCAAAGTAGTTTTGGT TATTT ACCATGTCTACTTTAGAGGGA TCATATCAAATTGCT TERM 4323 3880554 - 3880508 - R 100 -11.7 -4.87592 | opp_overlap 3880508 3880513 3880525 TTAGACATAATAAAA TCCCTCCAAAGTAGTTTTGGT TATTT ACCATGTCTACTTTAGAGGGA TCATATCAAATTGCT Cphy_3177 3881785 - 3880838 - | methionyl-tRNA formyltransferase TERM 4324 3882100 - 3882130 + H 100 -7 -5.95166 | opp_overlap 3882100 CTTAACTTAAAAGTA TCGCAAATTCTT ATAAATC AAGGGTTTGCGA TTTTTTTTGCTTGAA Cphy_3178 3882397 - 3882762 + | hypothetical protein Cphy_3179 3882857 - 3883609 + | methyltransferase type 11 Cphy_3180 3883666 - 3884091 + | hypothetical protein Cphy_3181 3884183 - 3885061 + | AraC family transcriptional regulator Cphy_3182 3885058 - 3885468 + | hypothetical protein Cphy_3183 3885446 - 3885646 + | hypothetical protein TERM 4325 3886078 - 3886058 - gf 95 -8.3 -4.8622 | overlap 3886059 TCCTTCAAGTAAAAA GCCAGATTG AAA CAATCTGGA ACAATAACATTCTTG TERM 4326 3886077 - 3886059 - gf 91 -11.8 -3.5125 | overlap 3886058 CCTTCAAGTAAAAAG CCAGATTG AAA CAATCTGG AACAATAACATTCTT TERM 4327 3886115 - 3886159 + GF 100 -19 -3.27022 | opp_overlap 3886115 3886117 3886121, overlap 3886121 AGCATGTTGGAAGTA CAGCAATATCTAATATCTGT GCTAA ACCGATATTAGATATTGCTG TTCGTGTGCAGTCAA TERM 4328 3886159 - 3886115 - gf 100 -19 -2.7185 | opp_overlap 3886115 3886121, overlap 3886117 3886121 AGCATGTTGGAAGTA CAGCAATATCTAATATCTGT GCTAA ACCGATATTAGATATTGCTG TTCGTGTGCAGTCAA TERM 4329 3886157 - 3886117 - gf 100 -15.8 -2.90392 | opp_overlap 3886115 3886121, overlap 3886115 3886121 CATGTTGGAAGTACA GCAATATCTAATATCTGT GCTAA ACCGATATTAGATATTGC TGTTCGTGTGCAGTC TERM 4330 3886153 - 3886121 - gf 78 -9.4 -3.32647 | opp_overlap 3886115 3886121, overlap 3886117 3886115 TTGGAAGTACAGCAA TATCTAATATCTGT GCTAA ACCGATATTAGATA TTGCTGTTCGTGTGC TERM 4331 3886121 - 3886153 + GF 80 -9.4 -3.40907 | opp_overlap 3886121 3886117 3886115, overlap 3886115 TTGGAAGTACAGCAA TATCTAATATCTGT GCTAA ACCGATATTAGATA TTGCTGTTCGTGTGC Cphy_3185 3885973 - 3886284 + | hypothetical protein Cphy_3186 3886259 - 3886846 + | hypothetical protein TERM 4332 3887010 - 3886992 - f 88 -11.8 -2.82015 | opp_overlap 3886992 CTCACACCTACGAGA TCCCTTGA TTT TCAAGGGA TTTTTGTTGTTTGGA TERM 4333 3886992 - 3887010 + F 100 -11.8 -5.38549 | opp_overlap 3886992 CTCACACCTACGAGA TCCCTTGA TTT TCAAGGGA TTTTTGTTGTTTGGA Cphy_3187 3887285 - 3887860 + | hypothetical protein TERM 4334 3887950 - 3887980 + F 100 -7.7 -5.67063 | CTTACTTATTAAGTG GAGAAAACCTAGA ATTTA TCTGGATTTTCTC TTTTTTTATAATCAA Cphy_3188 3888123 - 3888683 + | hypothetical protein Cphy_3189 3888680 - 3888856 + | hypothetical protein Cphy_3190 3888857 - 3889234 + | hypothetical protein TERM 4335 3889730 - 3889718 - g 73 -3.4 -5.15634 | opp_overlap 3889708 GAGGCCATTAAAAAA TGCT TATTT AGCA CGGATACAATTGGAG Cphy_3191 3889238 - 3890254 + | peptidase U61 LD-carboxypeptidase A Cphy_3192 3890403 - 3890927 + | GCN5-related N-acetyltransferase Cphy_3193 3890943 - 3891785 + | putative esterase TERM 4336 3891774 - 3891762 - f 82 -6.3 -4.96762 | GATATAGTAGAAAAA TTCGT GAA ACGAA ACTGTAAATAAACAC TERM 4337 3891883 - 3891853 - f 95 -10.5 -4.29176 | opp_overlap 3891853 ACACTTAATTTAAAA GTCGCTAATCCTA GTAGT CAGGGTTAGCGAC TTTGTTTCTAAAAAC TERM 4338 3891853 - 3891883 + F 100 -12 -4.55295 | opp_overlap 3891853 ACACTTAATTTAAAA GTCGCTAATCCT AGTAGTC AGGGTTAGCGAC TTTGTTTCTAAAAAC Cphy_3194 3892065 - 3892574 + | hypothetical protein TERM 4339 3892650 - 3892692 + F 100 -14.4 -2.85508 | opp_overlap 3892653, overlap 3892653 TAAGATATTTTGCAT TAAGCTGTACATACACTTCT AAT ATAAGAGTATGTACAGCTTG TAATTATACCATTTA TERM 4340 3892689 - 3892653 - f 100 -13.9 -3.15249 | opp_overlap 3892653 3892650 GATATTTTGCATTAA GCTGTACATACACTTCT AAT ATAAGAGTATGTACAGC TTGTAATTATACCAT TERM 4341 3892653 - 3892689 + F 100 -13.9 -3.56593 | opp_overlap 3892653, overlap 3892650 GATATTTTGCATTAA GCTGTACATACACTTCT AAT ATAAGAGTATGTACAGC TTGTAATTATACCAT TERM 4342 3892914 - 3892894 - g 84 -11.3 -3.53933 | opp_overlap 3892893 3892892, overlap 3892886 ACATTAACACCAGAA GATGATATC GAT GATATCATC CATGTTCTTTGGCCC Cphy_3195 3892747 - 3893268 + | hypothetical protein Cphy_3196 3893327 - 3894181 + | GCN5-related N-acetyltransferase Cphy_3197 3894375 - 3895118 + | methyltransferase type 11 TERM 4343 3895249 - 3895227 - T 100 -16.4 -4.90266 | opp_overlap 3895227 CCTAGTAAGGAAAAA GGTGAGGTTC AAA GAACCTCACC TTTTTAACTTAATTC TERM 4344 3895227 - 3895249 + T 100 -16.4 -4.77896 | opp_overlap 3895227 CCTAGTAAGGAAAAA GGTGAGGTTC AAA GAACCTCACC TTTTTAACTTAATTC Cphy_3198 3895749 - 3895264 - | TM2 domain-containing protein TERM 4345 3895765 - 3895796 + r 76 -6.2 -4.67048 | gap 1 CCTAATTTCCCCCTA GTAACAATAAATTAT ATT AT-ATTTGTTGTTAC TTTATTTTACCATAA Cphy_3199 3896226 - 3895840 - | hypothetical protein Cphy_3200 3897282 - 3896293 - | aminoglycoside phosphotransferase TERM 4346 3897619 - 3897582 - R 72 -8.6 -3.03575 | opp_overlap 3897589 ATAAAAAGGGATATA TTTTTAATGAGGAGTG ATTTGA CACTCCTCATTACATA AAGATTAAGATAATT TERM 4347 3897589 - 3897612 + r 84 -11.1 -3.06831 | opp_overlap 3897582 GGGATATATTTTTAA TGAGGAGTG ATTTGA CACTCCTCA TTACATAAAGATTAA Cphy_3201 3898055 - 3897624 - | hypothetical protein TERM 4348 3898065 - 3898092 + r 73 -7.9 -3.68351 | TTTCATAACATTCCT CCTAATTATAG TTTCTC CTATGATTAGG TTTCAATGCTGAGAA TERM 4349 3898312 - 3898326 + r 74 -5.8 -4.59773 | GTCATTAACTCATAC TGAATA TCC TATTCA TTTTTAACGATACCA Cphy_3202 3900641 - 3898410 - | cellulase TERM 4350 3900835 - 3900795 - R 100 -9.9 -5.27779 | opp_overlap 3900790 3900795 GCTAAGAGCAAAAAA GAGATAAAGACTATGCTTT TAC ATAACATAGTCGCTATCTC TTTTCGTCTTTGTAC Cphy_3203 3904963 - 3900878 - | hypothetical protein TERM 4351 3903021 - 3903035 + g 100 -8.6 -5.2015 | TTTATATCTTCTTTA TCTTGC ATT GCAAGA TTTTTATATTCTTCG TERM 4352 3903153 - 3903167 + g 100 -8.6 -5.1244 | TTTATATCTTCTTTA TCTTGC ATT GCAAGA TTTTTATATTCCTCG TERM 4353 3904819 - 3904807 - G 71 -4.9 -4.67697 | TTTGAAAATAAGAAA CTTTT TGT AAAAG CTGCTTCATTTCCTG TERM 4354 3905108 - 3905121 + r 79 -6.7 -4.55485 | opp_overlap 3905108 3905107 TTTTGTTAGAAAAAT CCATG CTTT CATGG TTTCCTTTTTTTCTC TERM 4355 3905202 - 3905181 - R 93 -6.6 -5.4505 | TTTTGTAAGAAAAAA GAGATACC GTATTA GGTATCCC CGCCTTCTTTATTCC Cphy_3204 3905993 - 3905211 - | GCN5-related N-acetyltransferase TERM 4356 3905971 - 3905946 - G 85 -12 -3.04183 | overlap 3905941 ACAATTTAAATCATA TGCAGATTGC TCCATT GCAATCTGCA AGATATCACTATTGT Cphy_3205 3907021 - 3906062 - | NAD-dependent glycerol-3-phosphate dehydrogenase domain-containing protein TERM 4357 3906169 - 3906179 + g 73 -5.4 -4.57341 | TACAAATCGGTAATT CTAC TCC GTAG TTTTTCCCAAGACTT TERM 4358 3907710 - 3907668 - R 100 -13.6 -4.21922 | opp_overlap 3907666 3907664 3907668 3907703, overlap 3907669 3907671 TCACCCAAAACTAAA GTATCCTCGGAACCCTTGAT TTC ATCAAGCATTCCGAGGACAA TATGTTCGCTATTCA TERM 4359 3907668 - 3907710 + r 74 -9.2 -3.136 | opp_overlap 3907668 3907669 3907671, overlap 3907666 3907664 3907703 TCACCCAAAACTAAA GTATCCTCGGAACCCTTGAT TTC ATCAAGCATTCCGAGGACAA TATGTTCGCTATTCA TERM 4360 3907709 - 3907669 - R 100 -17.1 -3.1243 | opp_overlap 3907668 3907666 3907664 3907703, overlap 3907668 3907671 CACCCAAAACTAAAG TATCCTCGGAACCCTTGAT TTC ATCAAGCATTCCGAGGACA ATATGTTCGCTATTC TERM 4361 3907707 - 3907671 - R 100 -17.5 -3.10977 | opp_overlap 3907668 3907666 3907664 3907703, overlap 3907669 3907668 CCCAAAACTAAAGTA TCCTCGGAACCCTTGAT TTC ATCAAGCATTCCGAGGA CAATATGTTCGCTAT Cphy_3206 3909908 - 3907719 - | methyl-accepting chemotaxis sensory transducer TERM 4362 3908267 - 3908281 + g 80 -5.8 -4.90013 | opp_overlap 3908267 CATCGATGGAATTAA CAATAT TCG ATATTG TTTTTGATTCCATTC Cphy_3207 3911275 - 3910130 - | glycoside hydrolase family protein Cphy_3208 3912373 - 3911468 - | binding-protein-dependent transport systems inner membrane component TERM 4363 3911764 - 3911754 - G 73 -5.4 -4.68209 | ACTGCAATAAATAAA GCAA TTG TTGC AAATACAGGTTTACA Cphy_3209 3913424 - 3912465 - | binding-protein-dependent transport systems inner membrane component TERM 4364 3913533 - 3913518 - R 77 -4.6 -5.25803 | AAGTTTGATAAAAAA GAGGAC GGTT GCCCCC AAACTTGTGCATAAA Cphy_3210 3915310 - 3913601 - | putative multiple sugar transport system substrate-binding protein TERM 4365 3915470 - 3915438 - R 74 -2.9 -5.4251 | opp_overlap 3915443, overlap 3915462 TGTATATACAAAAAA TATCTTTCATATATA ATT TATATATGCATAATA TACAATACCAAAGGA Cphy_3211 3917145 - 3915499 - | two component AraC family transcriptional regulator TERM 4366 3916076 - 3916089 + g 80 -6.7 -4.76233 | opp_overlap 3916067 ATACTATCCACCATT GAGGA AATT TCCTC TTTATTGTTTTCTTC Cphy_3212 3918976 - 3917186 - | histidine kinase internal region Cphy_3213 3919325 - 3919876 + | hypothetical protein TERM 4367 3919976 - 3919997 + T 100 -10.9 -4.33248 | opp_overlap 3919965 3919964 3919976, overlap 3919993 AAATGTATTAGATAA TGCGATCAC ATTT GTGGTCGCA TTTCTTATGCGATTC TERM 4368 3919997 - 3919976 - T 76 -8.7 -3.56562 | opp_overlap 3919976 3919993, overlap 3919965 3919964 AAATGTATTAGATAA TGCGATCAC ATTT GTGGTCGCA TTTCTTATGCGATTC Cphy_3214 3920307 - 3920002 - | hypothetical protein TERM 4369 3920032 - 3920057 + g 70 -2.7 -5.20781 | gap 1, overlap 3920035 CTTTTTCTTTGCTTC TAATTC-TGCTT TAT AAGCAAGAATTC TTTTGTTTTCTGGTA Cphy_3215 3920966 - 3920328 - | integrase, catalytic region Cphy_3216 3921454 - 3920978 - | transposase IS3/IS911 family protein TERM 4370 3921714 - 3921668 - R 100 -11.7 -4.87592 | opp_overlap 3921665 3921668 3921673 3921685 TTAGACATAATAAAA TCCCTCCAAAGTAGTTTTGGT TATTT ACCATGTCTACTTTAGAGGGA TCATATCATCAGATG TERM 4371 3921668 - 3921714 + r 87 -11.7 -2.66634 | opp_overlap 3921668, overlap 3921665 3921673 3921685 TTAGACATAATAAAA TCCCTCCAAAGTAGTTTTGGT TATTT ACCATGTCTACTTTAGAGGGA TCATATCATCAGATG Cphy_3217 3923274 - 3921799 - | glycoside hydrolase family protein Cphy_3218 3923565 - 3924722 + | major facilitator transporter TERM 4372 3924884 - 3924835 - T 77 -8.8 -3.60525 | gap 2, opp_overlap 3924840, overlap 3924840 TGTACCTAGATACAA CAAAACAGCGATATACA-CCC-CC GTTA GGTGGGCTGCAAATCGCTGTTTTT TATTGTCGTTTCCAA TERM 4373 3924879 - 3924840 - T 93 -8.7 -4.87592 | gap 2, opp_overlap 3924840, overlap 3924835 CTAGATACAACAAAA CAGCGATATACA-CCC-CC GTTA GGTGGGCTGCAAATCGCTG TTTTTTATTGTCGTT TERM 4374 3924840 - 3924879 + T 93 -6.5 -5.59534 | gap 2, opp_overlap 3924840 3924835 CTAGATACAACAAAA CAGCGATATACA-CCC-CC GTTA GGTGGGCTGCAAATCGCTG TTTTTTATTGTCGTT Cphy_3219 3925452 - 3924970 - | transcription activator effector binding Cphy_3220 3925700 - 3925509 - | hypothetical protein Cphy_3221 3926048 - 3926380 + | hypothetical protein TERM 4375 3926387 - 3926433 + T 88 -6.1 -5.37593 | gap 1, opp_overlap 3926389 3926417 AATTCATAGGCAAGT GAGCTTTTACAAAATAGA-TGA GTAA TCAATCTATGGAGTAAAAGCTC TTTTTTGATTTAACG Cphy_3222 3927549 - 3926521 - | ribonucleoside-diphosphate reductase Cphy_3223 3929858 - 3927564 - | ribonucleoside-diphosphate reductase, alpha subunit TERM 4376 3929156 - 3929143 - G 78 -6.7 -4.55689 | ACTACCGAGATAAAA CAGCT GCTT AGCTG ATAAAAAGGAGTACC TERM 4377 3929239 - 3929253 + g 80 -8.6 -3.99986 | TCATAAAACTTCTTC GCGTAT TCC ATACGC TTTGCCTTTTCTTCC TERM 4378 3929311 - 3929328 + g 88 -8.5 -4.68424 | ATAAATCTCTCTTGA GGAAGTT CAAA AACTTCC TTTTTAAGTCCCTTC TERM 4379 3930104 - 3930074 - R 100 -11.2 -4.43624 | opp_overlap 3930075 3930079 3930082, overlap 3930075 AAAGGATATAAGAAA GGGAAGAACAGACT GTA AGACTGTTCTTCCT TCGGTATACTAAGAA TERM 4380 3930075 - 3930103 + r 100 -14.7 -3.14468 | opp_overlap 3930074 3930075, overlap 3930079 3930082 AAGGATATAAGAAAG GGAAGAACAGACT GTA AGACTGTTCTTCC TTCGGTATACTAAGA TERM 4381 3930103 - 3930075 - R 100 -14.7 -3.24548 | opp_overlap 3930075 3930079 3930082, overlap 3930074 AAGGATATAAGAAAG GGAAGAACAGACT GTA AGACTGTTCTTCC TTCGGTATACTAAGA TERM 4382 3930079 - 3930099 + r 73 -8.3 -3.3941 | opp_overlap 3930075 3930074, overlap 3930075 3930082 ATATAAGAAAGGGAA GAACAGACT GTA AGACTGTTC TTCCTTCGGTATACT Cphy_3224 3930822 - 3930139 - | hypothetical protein Cphy_3225 3931246 - 3930812 - | hypothetical protein Cphy_3226 3932162 - 3931599 - | nitroreductase Cphy_3227 3933114 - 3932692 - | glyoxalase/bleomycin resistance protein/dioxygenase Cphy_3228 3934080 - 3933307 - | abortive infection protein TERM 4383 3933433 - 3933423 - G 91 -6.8 -5.29782 | TATAGGCATAAAAAA TGCC CAA GGCA AAAGCCAAAATTAAT Cphy_3229 3934561 - 3934169 - | hypothetical protein Cphy_3230 3936731 - 3934575 - | hypothetical protein TERM 4384 3935158 - 3935178 + g 86 -8.5 -4.5187 | overlap 3935153 3935171 ATATTTTCTAGATTT GAATTTAAA ATC TTTAAATTC TTTAATTTTTTTAAC TERM 4385 3935171 - 3935183 + g 79 -3.5 -5.48825 | overlap 3935158 TTGAATTTAAAATCT TTAAA TTC TTTAA TTTTTTTAACTGCTG Cphy_3231 3937206 - 3936787 - | GCN5-related N-acetyltransferase TERM 4386 3937067 - 3937057 - G 70 -6.8 -4.00589 | overlap 3937048 CCAAAACATATTAAA GCGT AAT ACGC CAATAGGGTTCTCAT Cphy_3232 3938262 - 3937375 - | hypothetical protein TERM 4387 3938668 - 3938640 - R 100 -11.1 -5.27779 | opp_overlap 3938638 3938637 3938640 GGTAAGATCAAAAAA TCGCTAACCCGTA ATT TAGGGATTAGCGA TGCTTATTTATATTC TERM 4388 3938640 - 3938668 + r 74 -8.9 -3.10929 | opp_overlap 3938640, overlap 3938638 3938637 GGTAAGATCAAAAAA TCGCTAACCCGTA ATT TAGGGATTAGCGA TGCTTATTTATATTC Cphy_3233 3939561 - 3938758 - | GCN5-related N-acetyltransferase Cphy_3234 3940430 - 3939729 - | creatininase TERM 4389 3940747 - 3940758 + r 70 -4.4 -4.91511 | GCATTTTTCAGCATT CTCA TGTG TGAG TTTTTCTAATAACAT Cphy_3235 3941185 - 3940793 - | 3-demethylubiquinone-9 3-methyltransferase Cphy_3236 3941937 - 3941236 - | hypothetical protein TERM 4390 3942188 - 3942147 - R 95 -10.4 -4.47328 | opp_overlap 3942149 3942152, overlap 3942149 3942152 3942156 AATTTTATGAGAAAA CGTAATTAAGCAGAGCAT AATGTA ATGCTCTGCTTAATTATT ATAACATTATTGATG TERM 4391 3942186 - 3942149 - R 100 -17.4 -2.56122 | opp_overlap 3942149 3942152, overlap 3942147 3942152 3942156 TTTTATGAGAAAACG TAATTAAGCAGAGCAT AATGTA ATGCTCTGCTTAATTA TTATAACATTATTGA TERM 4392 3942149 - 3942186 + r 100 -17.4 -3.39749 | opp_overlap 3942149 3942147 3942152 3942156, overlap 3942152 TTTTATGAGAAAACG TAATTAAGCAGAGCAT AATGTA ATGCTCTGCTTAATTA TTATAACATTATTGA TERM 4393 3942152 - 3942183 + r 100 -14.7 -3.82592 | opp_overlap 3942149 3942147 3942152 3942156, overlap 3942149 TATGAGAAAACGTAA TTAAGCAGAGCAT AATGTA ATGCTCTGCTTAA TTATTATAACATTAT TERM 4394 3942183 - 3942152 - R 100 -14.7 -3.42658 | opp_overlap 3942152 3942149, overlap 3942149 3942147 3942156 TATGAGAAAACGTAA TTAAGCAGAGCAT AATGTA ATGCTCTGCTTAA TTATTATAACATTAT TERM 4395 3942179 - 3942156 - R 87 -11.1 -3.46007 | opp_overlap 3942152 3942149, overlap 3942152 3942149 3942147 AGAAAACGTAATTAA GCAGAGCAT AATGTA ATGCTCTGC TTAATTATTATAACA Cphy_3237 3942916 - 3942269 - | hypothetical protein TERM 4396 3942426 - 3942440 + g 73 -3.5 -5.22794 | overlap 3942420 GTATCAAAATAGGTT CCCTG TAGAT TAGGG TTTTTTAGTCGTTCT TERM 4397 3942998 - 3942965 - H 100 -12.1 -4.56093 | opp_overlap 3942968 3942971 AATCTAATTATAAAA TAACAATTATTTACT TTAA AGTAAATAACTGTTA TACTAGAATAATCAC Cphy_3238 3943138 - 3943506 + | hypothetical protein TERM 4398 3943594 - 3943557 - T 91 -10.7 -4.04206 | opp_overlap 3943562, overlap 3943562 CTATTGTGACACAAA GAAAACTCTCAAGAGGT TCAG ACCCCTTGGGAGTTTTT ATTTAACAATTAGTG TERM 4399 3943562 - 3943589 + T 100 -10.6 -5.27938 | opp_overlap 3943557 3943562 GTGACACAAAGAAAA CTCTCAAGAGGT TCAG ACCCCTTGGGAG TTTTTATTTAACAAT TERM 4400 3943589 - 3943562 - T 100 -10.6 -5.05113 | opp_overlap 3943562, overlap 3943557 GTGACACAAAGAAAA CTCTCAAGAGGT TCAG ACCCCTTGGGAG TTTTTATTTAACAAT Cphy_3239 3945511 - 3943604 - | glycoside hydrolase family protein TERM 4401 3944428 - 3944445 + g 76 -4.9 -4.9792 | overlap 3944419 ATCGGTCGAGTGCTG CATTTGT TGTT GCAAATG TTTTTGTATACCCTG TERM 4402 3944818 - 3944837 + g 71 -9.4 -2.57132 | overlap 3944817 CAAGATCCATAGCCT CATCCATA CCTA TATGGATG GTTCTAGAACGGAAG Cphy_3240 3947259 - 3945691 - | extracellular solute-binding protein TERM 4403 3945981 - 3945991 + g 78 -5.4 -5.0133 | opp_overlap 3945981 TAAACTCTGCATAAA GGAT TGG ATCC TTTTTTACACGAGTA Cphy_3241 3948227 - 3947325 - | binding-protein-dependent transport systems inner membrane component Cphy_3242 3949159 - 3948227 - | binding-protein-dependent transport systems inner membrane component Cphy_3243 3950508 - 3949162 - | hypothetical protein Cphy_3244 3951996 - 3950512 - | hypothetical protein Cphy_3245 3952740 - 3952054 - | hypothetical protein TERM 4404 3952756 - 3952769 + r 100 -9.5 -5.10208 | TTTATCCCCTGTTCT GGCGC TTTA GCGCC TTTTTATTACGATTA Cphy_3246 3953715 - 3952801 - | ROK family protein TERM 4405 3953932 - 3953951 + H 100 -10.8 -5.77853 | opp_overlap 3953932 AAGATATAAAAAAAA GAGTTTGC TTCT GCAAACTC TTTTTTTTGGGACTT TERM 4406 3953951 - 3953932 - H 100 -10.8 -6.08563 | opp_overlap 3953932 AAGATATAAAAAAAA GAGTTTGC TTCT GCAAACTC TTTTTTTTGGGACTT Cphy_3247 3954250 - 3954681 + | hypothetical protein TERM 4407 3954801 - 3954783 - T 75 -2.4 -5.57729 | overlap 3954786 AAAGAATAGAAAAAA TAAGCATA TAT TATGCTCT CCACATATGTTCATA TERM 4408 3954798 - 3954786 - T 80 -6.3 -4.80737 | overlap 3954783 GAATAGAAAAAATAA GCATA TAT TATGC TCTCCACATATGTTC TERM 4409 3954855 - 3954835 - T 100 -9.8 -5.55769 | opp_overlap 3954835 CCGGATAACAAAAAA TCCCTTGA AAAAA TCAAGGGA TTTTTTATCACTATA TERM 4410 3954835 - 3954855 + T 100 -9.8 -5.29782 | opp_overlap 3954835 CCGGATAACAAAAAA TCCCTTGA AAAAA TCAAGGGA TTTTTTATCACTATA Cphy_3248 3955469 - 3954969 - | hypothetical protein Cphy_3249 3956145 - 3955645 - | cupin 2 domain-containing protein TERM 4411 3956536 - 3956502 - R 95 -5.9 -5.79595 | gap 1, opp_overlap 3956527 TCGTAAAACAAAAAA TCCCCAGAAACATTGA ATTT TGAA-GTTTCTGAGGA AAATATTCTGTCATC Cphy_3250 3957117 - 3956596 - | GCN5-related N-acetyltransferase TERM 4412 3956730 - 3956744 + g 74 -2.9 -5.41746 | CTGCATTTTCCTTAT TAACA ACAAC TGTTA TTTTTTTAGCACCTT Cphy_3251 3957550 - 3957191 - | hypothetical protein Cphy_3252 3958096 - 3958452 + | hypothetical protein TERM 4413 3958542 - 3958563 + T 100 -8.8 -5.45802 | opp_overlap 3958542 CTTAAATTGAAAAAA GCTTCTTC TGGGAC GAAGAAGC TTTTTATTTTCAAGC TERM 4414 3958563 - 3958542 - T 95 -8.8 -5.22039 | opp_overlap 3958542 CTTAAATTGAAAAAA GCTTCTTC TGGGAC GAAGAAGC TTTTTATTTTCAAGC TERM 4415 3958616 - 3958588 - T 100 -8.3 -5.5604 | opp_overlap 3958587 TCAAGCAACAAAAAA TTGCTAACCCT TGATTGT AGGATTAGCAA CCATTTTTATTAAGC Cphy_3253 3958930 - 3958646 - | hypothetical protein Cphy_3254 3959434 - 3959168 - | hypothetical protein TERM 4416 3959483 - 3959455 - R 100 -11.8 -5.77988 | opp_overlap 3959454 3959453 ATAGACACAAAAAAA CAGGAAAGCTTG ATTTA CTAGCTTTCCTG CCCTTTTCATTAAGC Cphy_3255 3960486 - 3959707 - | nitroreductase Cphy_3256 3961391 - 3960513 - | AraC family transcriptional regulator Cphy_3257 3963032 - 3961410 - | hypothetical protein TERM 4417 3962165 - 3962148 - G 80 -6.3 -4.96106 | CATAAAGATTAAAAA GGTTCCA ATGA TAGAACC AATTATCCCACCAAC Cphy_3258 3965569 - 3963044 - | homocysteine S-methyltransferase Cphy_3259 3966860 - 3965760 - | metallophosphoesterase TERM 4418 3967064 - 3967050 - H 78 -5.8 -4.75063 | overlap 3967030 ATAAAACTTTAAAAA CTTTTT AGA AAAAAG GTATAGACTATTTAG Cphy_3260 3967371 - 3968063 + | hypothetical protein TERM 4419 3968321 - 3968302 - g 82 -7.8 -4.43221 | AAAGATTGTAGAAAA GCTGCTGA TGCT TCAGCTGC AATCGGCGAAGGTCT Cphy_3261 3968083 - 3969093 + | hypothetical protein TERM 4420 3969192 - 3969145 - f 86 -4.2 -5.80248 | opp_overlap 3969152, overlap 3969147 3969152 TAATATATAAAAAAA TATTTAATTGCCCACCGTTT ATCTATTA AAACGGTGGGCAATTTTTTT GTGTTCTATGAATAC TERM 4421 3969190 - 3969147 - f 78 -6.8 -4.51477 | opp_overlap 3969152, overlap 3969145 3969152 ATATATAAAAAAATA TTTAATTGCCCACCGTTT ATCTATTA AAACGGTGGGCAATTTTT TTGTGTTCTATGAAT TERM 4422 3969152 - 3969185 + F 100 -15.5 -5.84432 | opp_overlap 3969147 3969145 3969152 TAAAAAAATATTTAA TTGCCCACCGTTT ATCTATTA AAACGGTGGGCAA TTTTTTTGTGTTCTA TERM 4423 3969185 - 3969152 - f 100 -15.5 -3.38522 | opp_overlap 3969152, overlap 3969147 3969145 TAAAAAAATATTTAA TTGCCCACCGTTT ATCTATTA AAACGGTGGGCAA TTTTTTTGTGTTCTA TERM 4424 3969536 - 3969566 + F 77 -7.6 -4.14257 | opp_overlap 3969536 TAACTTAGAAGATTA CTATGCGAGTGCTG ATT TAGGAATCGCATAG TTTATAATTATTAAA Cphy_3262 3969594 - 3970568 + | triple helix repeat-containing collagen TERM 4425 3970657 - 3970703 + T 100 -19.1 -3.10513 | opp_overlap 3970662, overlap 3970662 CCTACGTAACCAAAT AAAAAGCGTATCGCTAGATAG TCTAT CTATTTAGCGATACGCTTTTC TATATCTTCCGCTAT TERM 4426 3970698 - 3970662 - T 100 -16.8 -5.38326 | opp_overlap 3970657 3970662 GTAACCAAATAAAAA GCGTATCGCTAGATAG TCTAT CTATTTAGCGATACGC TTTTCTATATCTTCC TERM 4427 3970662 - 3970698 + T 100 -19 -4.68124 | opp_overlap 3970662, overlap 3970657 GTAACCAAATAAAAA GCGTATCGCTAGATAG TCTAT CTATTTAGCGATACGC TTTTCTATATCTTCC Cphy_3263 3971429 - 3970779 - | HAD family hydrolase Cphy_3264 3971582 - 3972370 + | Ig domain-containing protein Cphy_3265 3972440 - 3972670 + | hypothetical protein TERM 4428 3972901 - 3972856 - T 100 -18 -3.33671 | opp_overlap 3972861, overlap 3972861 ACATGCATGGCACAA GAAAAGTGCCTAAACAAAGT AAGTTG ACTTTGTTTAGGCACTTTTT TTAAGTCATTGGGTA TERM 4429 3972896 - 3972861 - T 100 -17.9 -4.78237 | opp_overlap 3972861, overlap 3972856 CATGGCACAAGAAAA GTGCCTAAACAAAGT AAGTTG ACTTTGTTTAGGCAC TTTTTTTAAGTCATT TERM 4430 3972861 - 3972896 + T 100 -17.9 -5.49729 | opp_overlap 3972861 3972856 CATGGCACAAGAAAA GTGCCTAAACAAAGT AAGTTG ACTTTGTTTAGGCAC TTTTTTTAAGTCATT Cphy_3266 3973902 - 3972937 - | inner-membrane translocator Cphy_3267 3975296 - 3973905 - | inner-membrane translocator TERM 4431 3974556 - 3974571 + g 83 -6.2 -5.10208 | TGCACCAGCGATTAC CATTGT AAGT ACAATG TTTTTCTTACCATTC Cphy_3268 3976851 - 3975289 - | ABC transporter related TERM 4432 3975605 - 3975615 + g 80 -6.8 -4.81083 | overlap 3975602 TTGTCAATCTCACGA GCGA TGA TCGC TTTTTGCTGATTACC TERM 4433 3976975 - 3976950 - R 100 -14.7 -3.61894 | opp_overlap 3976947 3976946 3976944 AATTGTCGTGAATAA GGGGGAACGGC TCTC GCCCTTCCCCC CCAATGGTTTATTTT Cphy_3269 3978252 - 3977083 - | basic membrane lipoprotein Cphy_3270 3978987 - 3978730 - | hypothetical protein Cphy_3271 3979680 - 3979006 - | putative UDP-N-acetylglucosamine diphosphorylase Cphy_3272 3981952 - 3979787 - | DNA topoisomerase TERM 4434 3981976 - 3981990 + H 72 -7.2 -3.86903 | overlap 3981963 3981975 GGCACAAATGTTTTC TTTGTG TTT CACAAA TGTTTTCCTTGTCTC TERM 4435 3982074 - 3982088 + H 72 -8.6 -2.98778 | overlap 3982071 CTCACAAATGCTTTC CTTGTG ATT CACAAG TACTTCTTACTCTTG Cphy_3273 3982438 - 3983076 + | hypothetical protein TERM 4436 3983161 - 3983205 + T 100 -12.3 -5.36441 | opp_overlap 3983161 TTAATATATAAAAAA CGTAAGCTCTATCGTGAAG AACTAAA CTTCAAGTTGGAGCTTACG TTTTTTCTATGAGAA TERM 4437 3983205 - 3983161 - T 100 -10.1 -5.47431 | opp_overlap 3983161 TTAATATATAAAAAA CGTAAGCTCTATCGTGAAG AACTAAA CTTCAAGTTGGAGCTTACG TTTTTTCTATGAGAA Cphy_3274 3984485 - 3983247 - | glycine hydroxymethyltransferase Cphy_3275 3985594 - 3984716 - | degV family protein TERM 4438 3985244 - 3985258 + g 77 -2.8 -5.45802 | overlap 3985246 ATCAATACAGATTAT TTTCCT GTC AGGATA TTTTTCTTTTAACCC TERM 4439 3985246 - 3985256 + g 70 -5.4 -4.3613 | overlap 3985244 CAATACAGATTATTT TCCT GTC AGGA TATTTTTCTTTTAAC TERM 4440 3985802 - 3985772 - H 74 -8.6 -3.26779 | opp_overlap 3985801 TTCTTAAAATATACA TATTAGAAGTTT GCTTTAT AAACTTCTAATA ACAGGTGCGGTTTTC TERM 4441 3985822 - 3985806 - H 80 -9.4 -3.409 | opp_overlap 3985805 3985801, overlap 3985804 AAACTTCTAATAACA GGTGCG GTTTT CGCACC GTCATTCTGATTATT Cphy_3276 3985882 - 3987255 + | MATE efflux family protein TERM 4442 3987380 - 3987357 - T 100 -14 -3.37796 | opp_overlap 3987357 TTCCAGCACGCAGAA TAGGCTAGCA CAAT TGCTAGCCTA TTTTTATTACCTATT TERM 4443 3987357 - 3987380 + T 100 -14 -5.12971 | opp_overlap 3987357 TTCCAGCACGCAGAA TAGGCTAGCA CAAT TGCTAGCCTA TTTTTATTACCTATT Cphy_3277 3988447 - 3987515 - | periplasmic binding protein/LacI transcriptional regulator Cphy_3278 3989517 - 3988513 - | monosaccharide-transporting ATPase TERM 4444 3989194 - 3989172 - G 74 -9.2 -3.08798 | overlap 3989174 ATTCCCCATTTAATA TACCTACTGC CAA GCAGCAGATA AAAGTAATCAATACC Cphy_3279 3991059 - 3989542 - | ABC transporter related TERM 4445 3991143 - 3991107 - R 90 -8.3 -4.78237 | gap 2, opp_overlap 3991102 3991112, overlap 3991108 3991110 3991112 TAGCTGATAATAAAA GTATATCACCCCTGTTA ATCAA TAACAGGGGTGAT-T-C TTTGGATTTTGGGGT TERM 4446 3991144 - 3991108 - R 76 -8.8 -3.46219 | opp_overlap 3991102 3991112, overlap 3991107 3991110 3991112 AGCTGATAATAAAAG TATATCACCCCTGTTA ATCAA TAACAGGGGTGATTCT TTGGATTTTGGGGTG TERM 4447 3991142 - 3991110 - R 100 -13.6 -3.29584 | opp_overlap 3991102 3991112, overlap 3991107 3991108 3991112 CTGATAATAAAAGTA TATCACCCCTGTTA ATCAA TAACAGGGGTGATT CTTTGGATTTTGGGG TERM 4448 3991112 - 3991140 + r 100 -16.2 -4.08307 | opp_overlap 3991110 3991107 3991108 3991112, overlap 3991102 GATAATAAAAGTATA TCACCCCTGTTA ATCAA TAACAGGGGTGA TTCTTTGGATTTTGG TERM 4449 3991140 - 3991112 - R 100 -16.2 -3.2024 | opp_overlap 3991112 3991102, overlap 3991110 3991107 3991108 GATAATAAAAGTATA TCACCCCTGTTA ATCAA TAACAGGGGTGA TTCTTTGGATTTTGG Cphy_3280 3992636 - 3991185 - | ABC-type sugar transport system ATPase component-like protein Cphy_3281 3993710 - 3992703 - | signal transduction histidine kinase, LytS Cphy_3282 3995337 - 3993730 - | two component AraC family transcriptional regulator TERM 4450 3996286 - 3996274 - g 70 -2.7 -5.14563 | GTTCTTATGAAAAAA TTAGA GCT TCCAA TCACACAGCAGACAA Cphy_3283 3995923 - 3997602 + | hypothetical protein TERM 4451 3997848 - 3997810 - f 100 -13.5 -3.75824 | opp_overlap 3997812, overlap 3997812 GATTTTATAATATAA TAGCTCTATCTAATTAA ACAAG TTAATTAGATAGAGCTT CCTAAATTCAACATA TERM 4452 3997812 - 3997846 + F 100 -16.1 -3.21912 | opp_overlap 3997810 3997812 TTTTATAATATAATA GCTCTATCTAATTAA ACAAG TTAATTAGATAGAGC TTCCTAAATTCAACA TERM 4453 3997846 - 3997812 - f 100 -16.1 -3.45788 | opp_overlap 3997812, overlap 3997810 TTTTATAATATAATA GCTCTATCTAATTAA ACAAG TTAATTAGATAGAGC TTCCTAAATTCAACA Cphy_3284 3997934 - 3998641 + | hypothetical protein TERM 4454 3998686 - 3998743 + T 100 -13.2 -3.76885 | gap 1, opp_overlap 3998686 ACATATAAAAATATA GGCATCTAATATAATAATTA-CTGGAT TGTTT ATCCTGATAATTATTTTGTTAGATGCC TATGTTTTTTTAAAA TERM 4455 3998743 - 3998686 - T 89 -11 -3.65185 | gap 1, opp_overlap 3998686 ACATATAAAAATATA GGCATCTAATATAATAATTA-CTGGAT TGTTT ATCCTGATAATTATTTTGTTAGATGCC TATGTTTTTTTAAAA Cphy_3285 4000441 - 3998753 - | hypothetical protein TERM 4456 3999825 - 3999810 - G 79 -3.2 -5.58454 | opp_overlap 3999810 GCGATATCAAAAAAA TATGCC ATTT GGCTTA TCAATTTACCATTTA TERM 4457 4000083 - 4000095 + g 90 -2.7 -5.9873 | AAAGGATTTTCAATA GTAAA AGC TTTGC TTTTTTTTATCGTCA TERM 4458 4000501 - 4000529 + H 79 -8.4 -4.07285 | overlap 4000483 4000481 4000499 4000517 4000519 TTGAAACATGCTTTT TGTTTCAATAGT ACTTG ATTATTGAAACA TGTTTTGTTTCAATA TERM 4459 4000535 - 4000563 + H 79 -8.4 -4.07285 | overlap 4000519 4000517 4000533 4000551 4000553 TATTGAAACATGTTT TGTTTCAATAGT ACTTG ATTATTGAAACA TGTTTTGTTTCAATA TERM 4460 4000569 - 4000597 + H 79 -8.4 -4.07285 | overlap 4000553 4000551 4000567 4000587 TATTGAAACATGTTT TGTTTCAATAGT ACTTG ATTATTGAAACA TGTTTTGTTTCAATA TERM 4461 4000587 - 4000613 + H 75 -9.7 -2.95409 | overlap 4000569 4000567 TTCAATAGTACTTGA TTATTGAAACA TGTTT TGTTTCAATAA TATACTTCATCATTC TERM 4462 4000881 - 4000870 - H 77 -4.4 -5.31072 | opp_overlap 4000876, overlap 4000871 ATAACATAATAAAAA TTGC GACT GCAA GTCCAATTGCGGTAT TERM 4463 4001136 - 4001185 + H 85 -8.2 -4.4891 | gap 1, opp_overlap 4001144, overlap 4001143 TAATTAAAGGCTCTA TAATAAATGTTGGGGTATGTGAA ATTAA TTCGC-TACTCCAACGTTTTTTA TTTTATAATAATAAA TERM 4464 4001143 - 4001178 + H 100 -6.3 -5.86976 | gap 1, opp_overlap 4001144, overlap 4001136 AGGCTCTATAATAAA TGTTGGGGTATGTGAA ATTAA TTCGC-TACTCCAACG TTTTTTATTTTATAA Cphy_3286 4001249 - 4002424 + | transposase IS204/IS1001/IS1096/IS1165 family protein TERM 4465 4002611 - 4002571 - T 100 -11.5 -4.87291 | opp_overlap 4002570 GAGCCTAATTAAAAA TGCACCTCAATTATTAG GTTTCGA CTAATAATTAAGATGCA ATTCAGTTTTTTAGA Cphy_3287 4004153 - 4002699 - | inosine-5'-monophosphate dehydrogenase TERM 4466 4003622 - 4003639 + g 71 -4.2 -4.74539 | TTGGAAGCTTCTCTT TTCTTG CTTGTC CAAGAA TTTTCTTAGCTTCTT TERM 4467 4003880 - 4003892 + g 78 -7.7 -4.34267 | GGTCAGTTATAACTC CGTTC TCT GAACG TTTTACCTTATCTAC TERM 4468 4004421 - 4004402 - R 70 -8 -3.16191 | opp_overlap 4004398 4004396 4004406 TGATATTTTTAGTAA TACATTAC TGTT GTAATGTA TAAAAGTGTCCGCAG TERM 4469 4004610 - 4004651 + r 87 -10.4 -3.5891 | opp_overlap 4004615, overlap 4004608 4004615 CCATACTGGGCACAG GAAAAGAGATGACTAACA ACAAAG TGTTAACCATCTCTTTTC TATTTCATTATAAAC TERM 4470 4004615 - 4004646 + r 70 -4.5 -4.84539 | opp_overlap 4004615, overlap 4004610 4004608 CTGGGCACAGGAAAA GAGATGACTAACA ACAAAG TGTTAACCATCTC TTTTCTATTTCATTA TERM 4471 4004646 - 4004615 - R 88 -8.9 -4.34402 | opp_overlap 4004615 4004610 4004608 CTGGGCACAGGAAAA GAGATGACTAACA ACAAAG TGTTAACCATCTC TTTTCTATTTCATTA Cphy_3288 4005193 - 4004684 - | hypothetical protein TERM 4472 4005072 - 4005060 - G 82 -7.7 -4.40358 | ACTGACGCTATAAAA GTAGC GAT GCTAC CTAAAATAGCTCCTC TERM 4473 4005446 - 4005413 - R 93 -11.3 -3.59262 | opp_overlap 4005416 4005421, overlap 4005416 TCCTATACGCTGAAA GAATCCATGTATA CTCATACT TATACATGGATTC TAAAGTCTTAAGATA TERM 4474 4005443 - 4005416 - R 72 -7.2 -3.93256 | opp_overlap 4005416 4005421, overlap 4005413 TATACGCTGAAAGAA TCCATGTATA CTCATACT TATACATGGA TTCTAAAGTCTTAAG Cphy_3289 4007108 - 4005483 - | chaperonin GroEL TERM 4475 4006109 - 4006128 + g 76 -5 -5.01553 | CTGCTTTATTTCCTT CACCATCA ACAA TGATAGTG TTTTCTTTCTGAATT Cphy_3290 4007494 - 4007207 - | chaperonin Cpn10 TERM 4476 4007368 - 4007392 + g 88 -5.7 -5.48213 | overlap 4007371 TTCCACCAGGGCCAA CTGCAACAACC TCT GCTTGTTGTGG TTTTTCTTTTGCCTG Cphy_3291 4008223 - 4008573 + | VanZ family protein TERM 4477 4008621 - 4008632 + T 73 -4.4 -5.05505 | opp_overlap 4008591 GTGAAACTTAATTCT TTCC ACTT GGAA TTTTTCGTTTGTCCT Cphy_3292 4009388 - 4008663 - | hypothetical protein TERM 4478 4009412 - 4009435 + r 84 -11 -3.03038 | overlap 4009422 TTAAGCCTTTCCATA GCCTGCAGGT TTTG AGCTGCAGGC TCTAATTTACGTGTG Cphy_3293 4010355 - 4009525 - | hypothetical protein TERM 4479 4009793 - 4009847 + g 90 -8.9 -4.57837 | opp_overlap 4009844, overlap 4009782 4009795 4009842 4009844 GCAACTACTTTATCG TAGTTTGGTGTAGT-CGTAGGAAGAGA TTC TTTCTTCCCACGCACTA-ACCAACCTG TTTTTAGACAGGTAT TERM 4480 4009795 - 4009845 + g 83 -9.3 -3.90316 | opp_overlap 4009844, overlap 4009793 4009842 4009844 AACTACTTTATCGTA GTTTGGTGTAGT-CGTAGGAAGAGA TTC TTTCTTCCCACGCACTA-ACCAACC TGTTTTTAGACAGGT TERM 4481 4010059 - 4010039 - G 76 -6.1 -4.69048 | ATAAAATTAAAGAAA CGATTAAGC GCT GCATAACCG CATACCGGACAATCC TERM 4482 4010248 - 4010225 - G 74 -5.2 -4.78848 | opp_overlap 4010228, overlap 4010206 4010227 TTTTCAAAGATAAAA TCCGCCTCAG TTAT CTGAGGCTTA TCTTCCTTATCTGAT TERM 4483 4010228 - 4010245 + g 88 -11.3 -3.78837 | opp_overlap 4010227 4010225 TCAAAGATAAAATCC GCCTCAG TTAT CTGAGGC TTATCTTCCTTATCT Cphy_3294 4012065 - 4010368 - | glutaminyl-tRNA synthetase TERM 4484 4010480 - 4010455 - G 71 -4.7 -4.57474 | overlap 4010458 GCAATCCACACAAAA GAATCCATTTC TTAA GAACTGGAATC TATCAAATGCTTTTG TERM 4485 4012296 - 4012260 - R 100 -14.5 -4.99043 | opp_overlap 4012260 TTGCCATAAACAAAA CCTCTTCCTGGCATATT ACT ATCGTGCCAGGAAGAGG TTTCTTTACTAACTA TERM 4486 4012260 - 4012296 + r 100 -15.4 -4.50627 | gap 1, opp_overlap 4012260 TTGCCATAAACAAAA CCTCTTCCTGGCAT-AT TACT ATCGTGCCAGGAAGAGG TTTCTTTACTAACTA Cphy_3295 4012950 - 4012384 - | cell wall hydrolase SleB Cphy_3296 4014570 - 4013428 - | hypothetical protein TERM 4487 4014522 - 4014506 - G 79 -8.1 -4.08823 | overlap 4014501 AGCAATAGAATGAAA TTACGTT TCA AACGTAA CAATTGTCGAAGTTT Cphy_3297 4015616 - 4014600 - | hypothetical protein TERM 4488 4015838 - 4015798 - R 79 -8 -4.05033 | gap 1, opp_overlap 4015799 4015800, overlap 4015800 GTGATTTGATACAAA TATT-TATGGTATAATGTT TGTA AACATTATACCATAGAATT TGTAAGAAAAAATTA TERM 4489 4015799 - 4015836 + r 90 -10.9 -3.85817 | opp_overlap 4015798 4015800, overlap 4015800 TGATTTGATACAAAT ATTTATGGTATAATGTT TGTA AACATTATACCATAGAA TTTGTAAGAAAAAAT TERM 4490 4015835 - 4015800 - R 95 -12.2 -3.61946 | opp_overlap 4015799 4015800, overlap 4015798 GATTTGATACAAATA TTTATGGTATAATGTT TGTA AACATTATACCATAGA ATTTGTAAGAAAAAA TERM 4491 4015800 - 4015835 + r 100 -14.4 -2.91276 | opp_overlap 4015800 4015798, overlap 4015799 GATTTGATACAAATA TTTATGGTATAATGTT TGTA AACATTATACCATAGA ATTTGTAAGAAAAAA Cphy_3298 4017669 - 4015921 - | pepF/M3 family oligoendopeptidase Cphy_3299 4020059 - 4018266 - | flavocytochrome c TERM 4492 4019954 - 4019937 - G 84 -11.3 -3.53091 | opp_overlap 4019935 AGTTCCGGGTGTAAA CCTTCCG CCCG CGGAAGG CGTTGCTGAGGGTGT TERM 4493 4019961 - 4019982 + g 74 -3.6 -5.12172 | overlap 4019962 CGCGGAAGGCGTTGC TGAGGGTG TAGCTC CTCCCTCG TTTTGTTTCTTACTA Cphy_3300 4021588 - 4020194 - | putative poly-gamma-glutamate biosynthesis (capsule formation)-like protein Cphy_3301 4021796 - 4022188 + | membrane-bound metal-dependent hydrolase TERM 4494 4022259 - 4022314 + T 100 -15 -4.14874 | opp_overlap 4022260, overlap 4022260 4022262 TGCTCTGCATGAAAA AGACCTGTTGCAAAATATGATACC TTAGGTTT GGTAACTTATTTTGCAACAGGTCC TTTTGCCCCTATTAT TERM 4495 4022260 - 4022313 + T 100 -18.5 -3.08201 | opp_overlap 4022260, overlap 4022259 4022262 GCTCTGCATGAAAAA GACCTGTTGCAAAATATGATACC TTAGGTTT GGTAACTTATTTTGCAACAGGTC CTTTTGCCCCTATTA TERM 4496 4022313 - 4022260 - T 100 -18.5 -4.72272 | opp_overlap 4022260 4022259 4022262 GCTCTGCATGAAAAA GACCTGTTGCAAAATATGATACC TTAGGTTT GGTAACTTATTTTGCAACAGGTC CTTTTGCCCCTATTA TERM 4497 4022262 - 4022311 + T 100 -15.3 -3.09272 | opp_overlap 4022260, overlap 4022260 4022259 TCTGCATGAAAAAGA CCTGTTGCAAAATATGATACC TTAGGTTT GGTAACTTATTTTGCAACAGG TCCTTTTGCCCCTAT Cphy_3302 4022676 - 4022326 - | hypothetical protein Cphy_3303 4023702 - 4023100 - | phosphoglycerate mutase TERM 4498 4023763 - 4023751 - R 71 -7.7 -3.52204 | CTACCCTTAAATGAA GCATC CAA GATGC CATAAGTATCTACTC Cphy_3304 4025027 - 4023831 - | MCP methyltransferase, CheR-type Cphy_3305 4026064 - 4025072 - | dTDP-glucose 4,6-dehydratase Cphy_3306 4026794 - 4026225 - | hypothetical protein Cphy_3307 4027183 - 4026839 - | hypothetical protein TERM 4499 4027481 - 4027427 - R 100 -8.2 -5.8187 | opp_overlap 4027431 4027444 TAGTTAATAAAAAAA GAAATGGTTGCATGAAATTATGAT TCTTTTT ATCATAATTTTCCTCAACCATTTC CATACATCAATCAAC Cphy_3308 4028118 - 4027540 - | hypothetical protein Cphy_3309 4028884 - 4028258 - | coagulation factor 5/8 type domain-containing protein Cphy_3310 4030549 - 4028993 - | hypothetical protein TERM 4500 4030562 - 4030573 + r 74 -3 -5.47218 | CATATAGCTCCTCCC TTGT TTAT ACAA TTTTTTTGCATACCG Cphy_3311 4031262 - 4030600 - | beta-phosphoglucomutase TERM 4501 4030866 - 4030886 + g 74 -2.5 -5.26316 | opp_overlap 4030869 4030871, overlap 4030869 4030871 CACATGAAACTGCAT CAATACTTG GCT CAAGTCCTG TTTTTTCTAGAATAA TERM 4502 4031321 - 4031372 + H 73 -9.1 -2.82775 | opp_overlap 4031319, overlap 4031319 4031362 ACTAAGTAACTTATT TTATTCATGACAAGAAAAAGTAA GCTTCA TAACTCTTTCTTTTCATGAATAA TGAATTTTATATAAA Cphy_3312 4031558 - 4032568 + | LacI family transcription regulator Cphy_3313 4034886 - 4032640 - | Kojibiose phosphorylase TERM 4503 4032730 - 4032716 - G 74 -2.8 -5.27477 | opp_overlap 4032729, overlap 4032718 ATTTGAACTAAAAAA CTTAAC TTT GTTATG GAAGAAGGAAGGCAT Cphy_3314 4037432 - 4035015 - | Kojibiose phosphorylase TERM 4504 4035587 - 4035575 - G 74 -7.7 -3.89614 | opp_overlap 4035573 4035575 TCCAATGGTGATAAA GAGGA AAT TCCTC TATTGGTATTGCATC Cphy_3315 4038314 - 4037436 - | binding-protein-dependent transport systems inner membrane component TERM 4505 4037829 - 4037811 - G 89 -6 -5.32882 | overlap 4037812 CATTATGACAAAAAA TGCATTTG CTC CAAATGCT AGCCATAGTGGAATA TERM 4506 4037828 - 4037812 - G 81 -9.5 -3.78644 | overlap 4037811 ATTATGACAAAAAAT GCATTTG CTC CAAATGC TAGCCATAGTGGAAT Cphy_3316 4039221 - 4038325 - | binding-protein-dependent transport systems inner membrane component TERM 4507 4038488 - 4038507 + g 80 -10.8 -3.18239 | GCATTGTTCGGCCCA CCATTGGT CATT ACCAATGG TTCATAAAGTATCTG TERM 4508 4039304 - 4039260 - R 100 -11.8 -3.9279 | gap 1, opp_overlap 4039260 4039261, overlap 4039261 AGTCAATGTTATAAA CCATTTGCGTATGCAG-TTTA CTAT TAAATCCACATACGCAAATGA TTTTCTCACAATCTC TERM 4509 4039303 - 4039261 - R 100 -13.1 -2.95192 | gap 1, opp_overlap 4039260 4039261, overlap 4039260 GTCAATGTTATAAAC CATTTGCGTATGCAG-TTTA CTAT TAAATCCACATACGCAAATG ATTTTCTCACAATCT TERM 4510 4039261 - 4039303 + r 74 -8.7 -3.23174 | gap 1, opp_overlap 4039261 4039260, overlap 4039260 GTCAATGTTATAAAC CATTTGCGTATGCAG-TTTA CTAT TAAATCCACATACGCAAATG ATTTTCTCACAATCT Cphy_3317 4040842 - 4039364 - | extracellular solute-binding protein Cphy_3318 4041326 - 4041751 + | MarR family transcriptional regulator Cphy_3319 4041748 - 4043130 + | MATE efflux family protein TERM 4511 4043483 - 4043458 - T 72 -4.7 -4.88495 | opp_overlap 4043460, overlap 4043460 ATACAGAGAATAAAA TACCACCTACC GTAT GATAGATGGTC TTTAAGCATTAATAT TERM 4512 4043481 - 4043460 - T 74 -7.3 -4.04697 | opp_overlap 4043460, overlap 4043458 ACAGAGAATAAAATA CCACCTACC GTAT GATAGATGG TCTTTAAGCATTAAT TERM 4513 4043619 - 4043656 + T 71 -8.7 -2.7924 | TACTAATACCACCGC TTTGTCTTTAAATCG CTTGTATT CGATTTAAAGACGGA TGATATGTTATCATA TERM 4514 4044082 - 4044055 - T 77 -4.2 -5.50499 | opp_overlap 4044055 4044058, overlap 4044058 GCACAGGCAAAAAAA TAAGACTTCCAA AATG CTGAAAGTCTTG ATTTTACTAGAAAGC TERM 4515 4044079 - 4044058 - T 78 -5.9 -4.8236 | opp_overlap 4044058 4044055, overlap 4044055 CAGGCAAAAAAATAA GACTTCCAA AATG CTGAAAGTC TTGATTTTACTAGAA Cphy_3321 4044943 - 4044302 - | RNA polymerase factor sigma-70 TERM 4516 4045187 - 4045220 + r 76 -6.2 -4.56629 | gap 2, opp_overlap 4045187 4045192, overlap 4045192 TAGGTCTACAGCATA GGAAACCGCC--TCTA TAAA TAGAACGGCGGTTTTC TTTTATCATCTTATC Cphy_3322 4046010 - 4045264 - | RNA methyltransferase Cphy_3323 4046592 - 4046158 - | ribonuclease III Cphy_3324 4047989 - 4046577 - | cysteinyl-tRNA synthetase TERM 4517 4046665 - 4046678 + g 70 -5.3 -4.41241 | ATCTCATCTGATTTC GCAAA GTCT TTTGC TTTTCTGGCACTTTG TERM 4518 4047032 - 4047054 + g 70 -2.7 -5.22794 | overlap 4047033 GAAGCTGTTCTACTG CGGTTTGGA TACGC TCTAAACCA TTTTTTGATGATTCT Cphy_3325 4048707 - 4048039 - | serine O-acetyltransferase TERM 4519 4048879 - 4048853 - R 100 -16.8 -6.13503 | CATGAACAAAAAAAA CTTCGTCTCTTA ATC TAAGAGACGAAG TAATCCGCGGTTCCA Cphy_3326 4049728 - 4049150 - | 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase Cphy_3327 4050236 - 4049796 - | AraC family transcriptional regulator TERM 4520 4050682 - 4050626 - R 74 -5.4 -4.87291 | gap 1, overlap 4050627 TAGTTTAATTAAAAA GGCCATTATTAAGTA-GCACATAAGAA TCTC TTCTTAATAGCATACCTAATAATGGCT GTCCCTTTGATAACC TERM 4521 4050681 - 4050627 - R 78 -8.9 -3.51651 | gap 1, overlap 4050626 AGTTTAATTAAAAAG GCCATTATTAAGTA-GCACATAAGAA TCTC TTCTTAATAGCATACCTAATAATGGC TGTCCCTTTGATAAC Cphy_3328 4050982 - 4050701 - | hypothetical protein Cphy_3329 4054015 - 4051097 - | glycoside hydrolase family 3 protein TERM 4522 4052771 - 4052755 - G 72 -9.5 -2.60212 | opp_overlap 4052754 4052751 4052750, overlap 4052754 CCACCACCTTAGAAT TCGTAAG ATT CTTACGA GTCCCTTTGTTGTAC Cphy_3330 4054431 - 4054141 - | hypothetical protein Cphy_3331 4057156 - 4055168 - | hypothetical protein Cphy_3332 4057928 - 4057149 - | ABC transporter related TERM 4523 4057301 - 4057311 + g 70 -6.8 -4.02736 | GTACTCTTTTTGCAT GGCT AGC AGCC TTTGTACTATGGGTT TERM 4524 4058019 - 4057985 - R 70 -4.4 -4.7458 | gap 1, opp_overlap 4057996 AGTATAACAAAGAAA GAGAATGCGTAGCCA TCGCTT TGGCTT-ACATTCTC CTGTTCAAACTTACA Cphy_3333 4059266 - 4058214 - | integral membrane sensor signal transduction histidine kinase Cphy_3334 4059956 - 4059285 - | two component transcriptional regulator TERM 4525 4059739 - 4059729 - G 70 -3.2 -4.91109 | GGCGGATGACAAAAA CACC ACA GGTA CTTTCGATACTCGTC Cphy_3335 4060809 - 4060078 - | aminoglycoside phosphotransferase TERM 4526 4060519 - 4060529 + g 78 -5.4 -5.00616 | overlap 4060521 4060521 ATTAATTCTATTTTG TAGC TGT GCTA TTTTTTGAGCACAGA TERM 4527 4060912 - 4060898 - R 70 -7.2 -3.57144 | opp_overlap 4060886 4060885 4060890 CCCCTCATTCGTAAA GAATGA GAT TCATTC GTAAAGAATGAGTTC Cphy_3336 4063470 - 4061107 - | alpha-tubulin suppressor and related RCC1 domain-containing protein TERM 4528 4061483 - 4061503 + g 82 -10.5 -3.55173 | TCAAATTCATTTATC GTTGGTGGA ATT TCCATCAAC TTATCCTGTTCTGAT Cphy_3337 4063964 - 4063470 - | ECF subfamily RNA polymerase sigma-24 factor Cphy_3338 4065068 - 4064361 - | phosphoglycerate mutase TERM 4529 4064402 - 4064386 - G 70 -8.7 -2.94232 | opp_overlap 4064386, overlap 4064385 4064382 TGTCTTGGAAAGAAT CCAGCGT TTG ACACTGG TTCTCCTTTCACATA Cphy_3339 4067127 - 4065325 - | glycerophosphoryl diester phosphodiesterase Cphy_3340 4067880 - 4067140 - | HAD family hydrolase TERM 4530 4067417 - 4067431 + g 71 -4.2 -4.78572 | opp_overlap 4067416 4067417, overlap 4067418 AGACATTTTAAATAT CCCGAA GGG TTCGGC TTTTGTTCATTAAAA Cphy_3341 4068926 - 4068393 - | helix-turn-helix type 11 domain-containing protein Cphy_3342 4069021 - 4069635 + | peptidase S51 dipeptidase E TERM 4531 4069687 - 4069745 + T 86 -11.4 -2.61695 | opp_overlap 4069734 4069741, overlap 4069688 GAGTGTGCATCCCTC GGAGAGTTTTTGATTTATAGGAAATTGT ATT GTAATTTCCTATAAATTAAAAAAGCACC CTCTTTCAGGGTGCC TERM 4532 4069759 - 4069741 - T 100 -10.3 -5.42514 | opp_overlap 4069687 4069688, overlap 4069734 CTATAAATTAAAAAA GCACCCT CTTTC AGGGTGC CACACTTTTACCTAA Cphy_3343 4071074 - 4070205 - | degV family protein Cphy_3344 4071937 - 4071104 - | DegV family protein TERM 4533 4071272 - 4071250 - G 78 -9.2 -3.59738 | opp_overlap 4071256 TATTACAGTGTGAAA TGCCAAGAAC ACG GTTCTTTGCA TCAATCACATCCTCT TERM 4534 4072179 - 4072146 - R 100 -9.8 -5.96894 | opp_overlap 4072146 4072150 ATCTAAATAAAAAAA GCAATAGAAAGC CCGTTAATTT GCTTTCTATTGC TTACTAAATGCTTTT TERM 4535 4072146 - 4072179 + r 78 -9.8 -3.21551 | opp_overlap 4072146, overlap 4072150 ATCTAAATAAAAAAA GCAATAGAAAGC CCGTTAATTT GCTTTCTATTGC TTACTAAATGCTTTT TERM 4536 4072219 - 4072247 + r 85 -9.2 -4.0098 | opp_overlap 4072227 ATTTATTATTCTGGG TAAAAAAATGAA CTCTA TTCATTTTTTTA TTATTTCCCTTGAAA TERM 4537 4072239 - 4072227 - R 72 -2.7 -5.40072 | opp_overlap 4072219 TTCTGGGTAAAAAAA TGAAC TCT ATTCA TTTTTTTATTATTTC Cphy_3345 4073491 - 4072265 - | phosphofructokinase Cphy_3346 4075199 - 4073838 - | xanthine/uracil/vitamin C permease TERM 4538 4075534 - 4075544 + r 70 -4 -5.03945 | CGCTAAGAAGCCTGA TTTC ACT GAAA TTTTTGTAATTATTC TERM 4539 4075668 - 4075642 - R 76 -5.2 -4.98061 | opp_overlap 4075650, overlap 4075649 ACATATTAAATAAAA TAAAAAACCCGC ATT GCAGATTTTTTC CCACAATGCAGGTTG TERM 4540 4075680 - 4075649 - R 100 -7.3 -5.95449 | opp_overlap 4075650, overlap 4075642 AAATAAAATAAAAAA CCCGCATTGCAGA TTTTTT CCCACAATGCAGG TTGTAATTTTATACA Cphy_3347 4077407 - 4075722 - | acetolactate synthase, large subunit, biosynthetic type Cphy_3348 4079213 - 4077540 - | dihydroxy-acid dehydratase TERM 4541 4079364 - 4079331 - R 100 -13.9 -5.58454 | opp_overlap 4079331 TTGATATTAAAAAAA CGCCCGCCATAAGCA AGGA TGCTTAGGGCGAACG TAATATCCGTGGTAC TERM 4542 4079331 - 4079364 + r 74 -9.5 -2.65264 | opp_overlap 4079331 TTGATATTAAAAAAA CGCCCGCCATAAGCA AGGA TGCTTAGGGCGAACG TAATATCCGTGGTAC TERM 4543 4079866 - 4079829 - R 89 -7.9 -4.99056 | opp_overlap 4079828 4079829 GAATATAACTAAAAA GAGCTAAGAAAACTTAA GTAA TTCTGTTTTCTTAACTC CTTTTTCTTGACTCT Cphy_3349 4081157 - 4079934 - | peptidase T TERM 4544 4081567 - 4081520 - R 75 -4.9 -5.06414 | opp_overlap 4081520 4081540 4081543 CTTTGCTAATAAAAA GCTATTGTAAAGCTGTCGATC TCTTGT AAGCATCGGCTCTACAATAGC TTTCCTATAAATCTC Cphy_3350 4085540 - 4081659 - | phosphoribosylformylglycinamidine synthase TERM 4545 4085835 - 4085797 - H 79 -6.7 -4.70879 | TCCAAAGCGCAAAAA GCTAGTTCATCCATACA GTATT TGTAAGGGAGAACCAGC ATGCGTAGTTAAGAA Cphy_3351 4085878 - 4086840 + | glycosyl transferase family protein Cphy_3352 4086874 - 4087764 + | LysR family transcriptional regulator TERM 4546 4087854 - 4087798 - T 100 -15.6 -4.21787 | opp_overlap 4087804, overlap 4087801 4087804 AAAAAATGCTTAAAA TAACAAGGGTGATATAGATTTTCGTT TTACC AACGAAAACTTATATCACCCTTATTG TTTCTAATATCAATT TERM 4547 4087851 - 4087801 - T 100 -17.3 -4.2018 | opp_overlap 4087804, overlap 4087798 4087804 AAATGCTTAAAATAA CAAGGGTGATATAGATTTTCGTT TTACC AACGAAAACTTATATCACCCTTA TTGTTTCTAATATCA TERM 4548 4087804 - 4087848 + T 100 -16.8 -4.17309 | opp_overlap 4087801 4087798 4087804 TGCTTAAAATAACAA GGGTGATATAGATTTTCGTT TTACC AACGAAAACTTATATCACCC TTATTGTTTCTAATA TERM 4549 4087848 - 4087804 - T 100 -16.8 -4.20868 | opp_overlap 4087804, overlap 4087801 4087798 TGCTTAAAATAACAA GGGTGATATAGATTTTCGTT TTACC AACGAAAACTTATATCACCC TTATTGTTTCTAATA Cphy_3353 4088837 - 4087902 - | succinylglutamate desuccinylase/aspartoacylase Cphy_3354 4089773 - 4088838 - | succinylglutamate desuccinylase/aspartoacylase Cphy_3355 4090584 - 4090087 - | 3-isopropylmalate dehydratase, small subunit Cphy_3356 4091997 - 4090732 - | 3-isopropylmalate dehydratase, large subunit Cphy_3357 4092360 - 4092010 - | hypothetical protein Cphy_3358 4093718 - 4092636 - | 3-isopropylmalate dehydrogenase TERM 4550 4092816 - 4092837 + g 76 -5.2 -5.04385 | opp_overlap 4092816, overlap 4092818 GGCAGCCGATAATAT TGTTGCGA TTGGAT TCGCAATA TTTTTTCCAGCTATG TERM 4551 4093429 - 4093404 - G 76 -6.2 -4.55023 | TCGAAGATTACAAAA TAGCCCTAAG CCCTTT CTTATGGCTA ATAATCCTGCTTCTG Cphy_3359 4094025 - 4094168 + | hypothetical protein TERM 4552 4094303 - 4094351 + T 75 -9.8 -2.91668 | gap 2, opp_overlap 4094304, overlap 4094302 TTTTGTAAAATAAAA AGGCAAGTGATGGATG-CACT-GT AAT ACTAGTGTCCTCCATTACTTGCCG ATTTCATATGGTAAT TERM 4553 4094350 - 4094304 - T 100 -11.1 -5.45802 | gap 2, opp_overlap 4094303 4094302 TTTGTAAAATAAAAA GGCAAGTGATGGATG-CACT-GT AAT ACTAGTGTCCTCCATTACTTGCC GATTTCATATGGTAA Cphy_3360 4095204 - 4094449 - | HAD family hydrolase Cphy_3361 4096109 - 4095186 - | LysR family transcriptional regulator TERM 4554 4096167 - 4096181 + r 86 -7.2 -4.82863 | ACACTAAACGTCCTA TTTTGG CAA CCAAAA TTTCTTTTCTCGTTA Cphy_3362 4097285 - 4096233 - | A/G-specific adenine glycosylase TERM 4555 4096913 - 4096897 - G 90 -10.9 -4.27584 | ACCGGTAATTGAAAA GCAATCG AAC CGATTGC CCCTGAGGTATACGA Cphy_3363 4097680 - 4098708 + | hypothetical protein TERM 4556 4098718 - 4098759 + T 100 -17.7 -4.34263 | opp_overlap 4098718 AAATAACATAAAAAA CGGAATATTTTATTGAATG TAGT CTTTCAATAAAATATTCCG TTTCTATTATTCACG TERM 4557 4098759 - 4098718 - T 100 -17.7 -5.57729 | opp_overlap 4098718 AAATAACATAAAAAA CGGAATATTTTATTGAATG TAGT CTTTCAATAAAATATTCCG TTTCTATTATTCACG TERM 4558 4098796 - 4098813 + T 74 -7.1 -4.03978 | GTTCACGAAGTGTAC CTTTTCA TTAA TGAAAAG TTTATGTAGCAACTT Cphy_3364 4101254 - 4098867 - | transglutaminase domain-containing protein TERM 4559 4101452 - 4101464 + r 70 -6.3 -4.27796 | opp_overlap 4101452 CGACGCAGGCACAAA CTTCA GTG TGAAG TTTTAGAATTTCTTA TERM 4560 4101470 - 4101508 + r 84 -11.1 -3.06261 | opp_overlap 4101473, overlap 4101473 CAGTGTGAAGTTTTA GAATTTCTTAGGCGGCG TCTTT TGGCGCCTTAGAAATTC TCTTCACACTTAGCC Cphy_3365 4102687 - 4101518 - | hypothetical protein Cphy_3366 4103655 - 4102705 - | ATPase TERM 4561 4102758 - 4102776 + g 86 -8.2 -4.50686 | GCAACAACCCTCGAA GTATCTTC TCC GGAGATAC TTTATTAATTTTTGC TERM 4562 4103936 - 4103897 - R 100 -25.2 -4.83615 | opp_overlap 4103888 4103900 CACGCTGTATAAAAA TGAGGCCCGACACATGCC GTGT GGCACGTGTCGGACCTCA TATACAGACATGTAT TERM 4563 4103900 - 4103933 + r 100 -16.7 -2.62396 | opp_overlap 4103897, overlap 4103888 GCTGTATAAAAATGA GGCCCGACACATGCC GTGT GGCACGTGTCGGACC TCATATACAGACATG Cphy_3367 4106953 - 4103996 - | cellulose 1,4-beta-cellobiosidase TERM 4564 4107017 - 4106980 - R 100 -16.6 -2.78384 | opp_overlap 4106989, overlap 4106989 TTTCTGCGTACCATA CTGGCAATAGAAAGTG ACTTAA CACTTTCTATTGCCAA ACTTAAAAGAAAATT Cphy_3368 4109792 - 4107033 - | cellulose 1,4-beta-cellobiosidase TERM 4565 4109743 - 4109765 + g 84 -12 -2.78793 | opp_overlap 4109735, overlap 4109740 AGAGTAACTACCATT GCAGCGGTCA TAA TGGCTGCTGC TACTCTCTTGTAGAT TERM 4566 4110421 - 4110384 - R 100 -7.2 -5.71983 | opp_overlap 4110390, overlap 4110390 CTAATCATAAAAAAA GAAAAACTGTTGCA TTTGTTACTG TGCAACAGTTTCCC TTATAAATATTTTTT TERM 4567 4110415 - 4110390 - R 90 -4.8 -5.89659 | opp_overlap 4110390, overlap 4110384 ATAAAAAAAGAAAAA CTGTTGCA TTTGTTACTG TGCAACAG TTTCCCTTATAAATA Cphy_3369 4112468 - 4110435 - | heat shock protein 90 TERM 4568 4112602 - 4112632 + r 70 -8.4 -3.00213 | opp_overlap 4112604, overlap 4112601 GAAATGTCAAGAAAA AATTAGCACTCATT AGT AATGAGTGCTAACA ATTATTCTTCATATG TERM 4569 4112630 - 4112604 - R 100 -15.4 -5.4756 | opp_overlap 4112602 4112601 AATGTCAAGAAAAAA TTAGCACTCATT AGT AATGAGTGCTAA CAATTATTCTTCATA Cphy_3370 4113128 - 4112634 - | hypothetical protein Cphy_3371 4113993 - 4113223 - | hypothetical protein TERM 4570 4114110 - 4114055 - R 95 -11.4 -3.86266 | gap 1, opp_overlap 4114061 4114062 4114065, overlap 4114063 AGATTAGTACAAGAA GTCAACAACAGGGTCAAATGGATTCAT AAA ATGAAACCATTTGACCCTGCCTTTT-C AAACTTGAAAACATG TERM 4571 4114061 - 4114105 + r 100 -15.9 -4.14392 | opp_overlap 4114055 4114063, overlap 4114062 4114065 GTACAAGAAGTCAAC AACAGGGTCAAATGGATTCAT AAA ATGAAACCATTTGACCCTGCC TTTTCAAACTTGAAA TERM 4572 4114062 - 4114104 + r 100 -19.4 -3.08314 | opp_overlap 4114055 4114063, overlap 4114061 4114065 TACAAGAAGTCAACA ACAGGGTCAAATGGATTCAT AAA ATGAAACCATTTGACCCTGC CTTTTCAAACTTGAA TERM 4573 4114103 - 4114063 - R 100 -22.9 -3.78556 | opp_overlap 4114062 4114061 4114065, overlap 4114055 ACAAGAAGTCAACAA CAGGGTCAAATGGATTCAT AAA ATGAAACCATTTGACCCTG CCTTTTCAAACTTGA TERM 4574 4114065 - 4114101 + r 100 -19.7 -2.75349 | opp_overlap 4114063 4114055, overlap 4114062 4114061 AAGAAGTCAACAACA GGGTCAAATGGATTCAT AAA ATGAAACCATTTGACCC TGCCTTTTCAAACTT Cphy_3372 4115807 - 4114179 - | ABC transporter related Cphy_3373 4117541 - 4116111 - | hypothetical protein TERM 4575 4117734 - 4117790 + r 100 -15.9 -3.05384 | gap 2, opp_overlap 4117734 4117742, overlap 4117742 TTATAACGCTATTAA CTATAAAACGAGACAAAATATGATTTC GTAAA GAAAT-ATA-TTTGTCTCGTTTTATAG TTACATGACAAGGAA TERM 4576 4117790 - 4117734 - R 100 -15.9 -3.19653 | gap 2, opp_overlap 4117734 4117742, overlap 4117742 TTATAACGCTATTAA CTATAAAACGAGACAAAATATGATTTC GTAAA GAAAT-ATA-TTTGTCTCGTTTTATAG TTACATGACAAGGAA TERM 4577 4117782 - 4117742 - R 80 -7.3 -4.56607 | gap 2, opp_overlap 4117734 4117742, overlap 4117734 CTATTAACTATAAAA CGAGACAAAATATGATTTC GTAAA GAAAT-ATA-TTTGTCTCG TTTTATAGTTACATG TERM 4578 4117742 - 4117782 + r 80 -7.3 -4.55491 | gap 2, opp_overlap 4117742 4117734, overlap 4117734 CTATTAACTATAAAA CGAGACAAAATATGATTTC GTAAA GAAAT-ATA-TTTGTCTCG TTTTATAGTTACATG Cphy_3374 4119971 - 4117863 - | glutamine synthetase catalytic region TERM 4579 4119857 - 4119873 + g 72 -3.7 -5.02074 | overlap 4119859 GTGGATCCAAATCCT CACCATT CTT AATGGTC TTTTTTAACGCCTCA TERM 4580 4120137 - 4120110 - R 95 -9.2 -5.25803 | opp_overlap 4120110 AATTTTTATAAAAAA GGGTGCTCTC ACTAATTG GAGAACACCC TTGCTCTAAGAACAA Cphy_3375 4121241 - 4120333 - | MscS mechanosensitive ion channel TERM 4581 4121089 - 4121061 - G 70 -8.3 -3.42583 | CTAAGACATTCATAA GTTTCTTACCTAC AAA GTAGACAAAAAAC GATATCAGTATCAAA Cphy_3376 4122044 - 4121385 - | hypothetical protein TERM 4582 4121500 - 4121488 - G 76 -7.7 -4.12225 | AAGGAGCAAACCAAA CAGCA AAG TGCTG GTGCAATAAAAATTG Cphy_3377 4123070 - 4122138 - | mannose-6-phosphate isomerase, class I TERM 4583 4123288 - 4123275 - H 71 -5.3 -4.7339 | opp_overlap 4123275 AATAAACTGTAAAAA GAAAG GGGT CTTTC CTTTATATGATACAT Cphy_3378 4123295 - 4123918 + | methyltransferase small TERM 4584 4124017 - 4124058 + T 100 -18.5 -3.83844 | gap 1, opp_overlap 4124017, overlap 4124032 TTTCTAACAAATAAA GAGAGAATCAC-AAAAGAAA TTA TTTCTTTTTGTGATTCTCTC TTATTCATTGATAAG TERM 4585 4124058 - 4124017 - T 100 -18.5 -4.67607 | gap 1, opp_overlap 4124017 4124032 TTTCTAACAAATAAA GAGAGAATCAC-AAAAGAAA TTA TTTCTTTTTGTGATTCTCTC TTATTCATTGATAAG TERM 4586 4124032 - 4124042 + T 70 -4 -5.02439 | opp_overlap 4124017, overlap 4124017 GAGAGAATCACAAAA GAAA TTA TTTC TTTTTGTGATTCTCT TERM 4587 4124091 - 4124079 - T 72 -3.3 -5.20333 | opp_overlap 4124079 CATTGATAAGAAAAA CTTGC GGA GCATG TAATTCTAATTACTC Cphy_3379 4126075 - 4124135 - | ABC transporter transmembrane region Cphy_3380 4127831 - 4126110 - | ABC transporter transmembrane region TERM 4588 4127543 - 4127562 + g 72 -9.4 -2.62788 | overlap 4127540 4127535 CACCAGATAAGTTTG TGATACGT TCAA ACGTATCA TGCCTTATGGTCTGT TERM 4589 4128023 - 4127997 - R 100 -12.4 -4.81249 | opp_overlap 4127996 CTGTAAACGTAAAAA TGCACCACAGAA CTT TTCCATGGTGCA ATCATATACTTTATT Cphy_3381 4128618 - 4128034 - | xanthine phosphoribosyltransferase TERM 4590 4128723 - 4128755 + r 81 -10.1 -3.00617 | opp_overlap 4128723 4128731, overlap 4128720 4128731 TTTTTCTTCTAATCA TGGTAAAATCATGAT TTC ATCTTGATTTTATCA TATATAGGTTTCTTA TERM 4591 4128803 - 4128777 - R 100 -12.4 -4.17048 | opp_overlap 4128774 4128777 4128783, overlap 4128783 GGTTTCTTAAAATAA GAAAAAGCACGC TTT GCGTACTTTTCC TTGTCATGTATGGAA TERM 4592 4128777 - 4128803 + r 73 -8 -3.49777 | opp_overlap 4128777 4128783, overlap 4128774 4128783 GGTTTCTTAAAATAA GAAAAAGCACGC TTT GCGTACTTTTCC TTGTCATGTATGGAA TERM 4593 4128797 - 4128783 - R 100 -7.8 -5.4593 | opp_overlap 4128777 4128774 4128783, overlap 4128777 TTAAAATAAGAAAAA GCACGC TTT GCGTAC TTTTCCTTGTCATGT Cphy_3382 4130012 - 4128852 - | D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding TERM 4594 4129527 - 4129515 - G 76 -6.3 -4.62441 | TTCCACAGAAATAAA TGGAT CAC ATCCA AATACCTCCATCCCA Cphy_3383 4131194 - 4130031 - | phosphoserine aminotransferase TERM 4595 4131420 - 4131371 - R 89 -8.9 -4.47328 | opp_overlap 4131375, overlap 4131375 AACCTTATTATAAAA TCAATGGTATATCAAAAAAACTC TATA AAGTCTTCTTGATATACCATTTT TTAAATTATACCATA TERM 4596 4131416 - 4131375 - R 100 -14.1 -3.77302 | opp_overlap 4131375, overlap 4131371 TTATTATAAAATCAA TGGTATATCAAAAAAACTC TATA AAGTCTTCTTGATATACCA TTTTTTAAATTATAC TERM 4597 4131375 - 4131416 + r 95 -9 -5.1925 | opp_overlap 4131375 4131371 TTATTATAAAATCAA TGGTATATCAAAAAAACT CTATAA AGTCTTCTTGATATACCA TTTTTTAAATTATAC Cphy_3384 4132506 - 4131547 - | hypothetical protein Cphy_3385 4132805 - 4132527 - | hypothetical protein Cphy_3386 4133266 - 4132757 - | hypothetical protein TERM 4598 4133625 - 4133579 - R 78 -6.9 -4.46212 | gap 1, opp_overlap 4133584, overlap 4133561 4133584 GGCCTTATTATAAAA CCAAAGGTATATCAA-AAGCTC TACA AAGCTTCTTGATATACCTTTTT TAAATTATGCCATAT TERM 4599 4133620 - 4133584 - R 100 -11.2 -4.28487 | gap 1, opp_overlap 4133584, overlap 4133579 TATTATAAAACCAAA GGTATATCAA-AAGCTC TACA AAGCTTCTTGATATACC TTTTTTAAATTATGC TERM 4600 4133584 - 4133620 + r 100 -10.5 -5.1925 | gap 1, opp_overlap 4133584 4133579 TATTATAAAACCAAA GGTATATCAA-AAGCT CTACAA AGCTTCTTGATATACC TTTTTTAAATTATGC Cphy_3387 4134319 - 4133813 - | phosphoesterase PA-phosphatase related TERM 4601 4134465 - 4134445 - R 100 -6.2 -5.95166 | opp_overlap 4134449 TCGAATCAAAAAAAA GAAACTGT TATCC ACAGTTCC CTCTGATTTATCCGT TERM 4602 4134540 - 4134506 - R 87 -4.5 -5.79595 | opp_overlap 4134519, overlap 4134519 TTCTAAAATAAAAAA TAGCAAAAAACAAGA GATTT TCTCATTTTTCACTA TTAAAACTTTTATTT TERM 4603 4134529 - 4134519 - R 71 -5.4 -4.71318 | opp_overlap 4134519, overlap 4134506 AATAGCAAAAAACAA GAGA TTT TCTC ATTTTTCACTATTAA TERM 4604 4134567 - 4134577 + r 70 -4 -5.00616 | ATTTTCTTTAATTAC TTCA CAT TGAA TTTTTTAAACAAACC TERM 4605 4136810 - 4136824 + r 77 -8.6 -3.57615 | ACACGTACTGACTGA TCCATC AAA GATGGA TTTACGCCCTATTCA TERM 4606 4136987 - 4136998 + r 76 -7.2 -4.2354 | AGGTTCTCTTTCACT CCCC TCCC GGGG TTCTTTTCACCTTTC TERM 4607 4137223 - 4137240 + r 93 -11.3 -3.63895 | opp_overlap 4137222 4137221 TTGCGGTCCATAACC CCGTGGA TAAA TCCACGG TTTAGGCTCCTTCCC TERM 4608 4137945 - 4137956 + r 74 -3 -5.49579 | opp_overlap 4137945 ACTTATATATTAGAA GAAT TTTC ATTC TTTTCTTTTTTATAA TERM 4609 4139085 - 4139105 + r 80 -8.9 -3.64371 | opp_overlap 4139084 4139080, overlap 4139086 CAGTTTCAAATGCAG TCCCAGGGT TGA GCCCTGGGC TTTCACATCTGACTT TERM 4610 4139086 - 4139104 + r 89 -12.4 -2.7814 | opp_overlap 4139084 4139080, overlap 4139085 AGTTTCAAATGCAGT CCCAGGGT TGA GCCCTGGG CTTTCACATCTGACT TERM 4611 4139725 - 4139705 - R 90 -9.9 -4.06903 | overlap 4139700 AACTCTCAAATTAAA GTTTTTAAC GAA GTTAAAAAC TGATACTAATCGACG TERM 4612 4140398 - 4140365 - R 87 -7.6 -4.84359 | gap 1 TTACTCCTATAAAAA GTGCTATCCTAAAGA TCAAT TCAT-AGGATAGCAC TCAAAATAACCTTTA Cphy_3388 4145495 - 4140411 - | glucan endo-1,3-beta-D-glucosidase TERM 4613 4145597 - 4145579 - R 73 -8.2 -3.49482 | opp_overlap 4145578 4145581, overlap 4145577 4145581 TTATAGCATGAAATA CAGCTGAT GAA ATCAGCTA CTTCCTATAGTAAAA TERM 4614 4145581 - 4145595 + r 71 -8.6 -2.82519 | opp_overlap 4145581 4145579 4145577, overlap 4145578 ATAGCATGAAATACA GCTGAT GAA ATCAGC TACTTCCTATAGTAA TERM 4615 4145595 - 4145581 - R 74 -8.6 -3.31564 | opp_overlap 4145578 4145581, overlap 4145579 4145577 ATAGCATGAAATACA GCTGAT GAA ATCAGC TACTTCCTATAGTAA TERM 4616 4145720 - 4145704 - R 91 -7.9 -5.31877 | opp_overlap 4145704 ATTCATCACAAAAAA GGGAGGC AAA GCTTCCC TTCCATCACATGTAT TERM 4617 4145704 - 4145720 + r 81 -10.1 -3.07622 | opp_overlap 4145704 ATTCATCACAAAAAA GGGAGGC AAA GCTTCCC TTCCATCACATGTAT Cphy_3389 4146588 - 4145767 - | formamidopyrimidine-DNA glycolase, H2TH DNA binding TERM 4618 4146878 - 4146913 + r 89 -12.1 -3.23274 | opp_overlap 4146878, overlap 4146873 CAGTACTAAAACAAA GGCTTACTATGATAA AATGAA TAATCATAGTAAGCC TTCCATTATACCCAA TERM 4619 4146913 - 4146878 - R 100 -12.1 -4.73614 | opp_overlap 4146873 4146878 CAGTACTAAAACAAA GGCTTACTATGATAA AATGAA TAATCATAGTAAGCC TTCCATTATACCCAA Cphy_3390 4148716 - 4146977 - | FAD linked oxidase domain-containing protein TERM 4620 4148754 - 4148740 - R 88 -11.4 -3.28712 | CTGCTCCTTTCACAA TGCCGC TTT GCGGCA TCTCAAATAACCAAG TERM 4621 4148840 - 4148890 + r 72 -9 -2.67171 | opp_overlap 4148860, overlap 4148839 4148837 4148860 TTCTTAACCATGCCT GCTCAGTAGTCTGTGTGAAAGAAC CTT GTTCTTTCACACAGGAAACCATGC CTGTTTAGTAGACTG TERM 4622 4148942 - 4148968 + r 83 -10.3 -3.14963 | GCAGGCACAAATTCC GTGTGAAAGAG CCTTA TTCTTTCACAC TTCGCTCCTTGTCAA Cphy_3391 4150516 - 4148963 - | carbohydrate kinase FGGY TERM 4623 4150164 - 4150183 + g 72 -3.6 -5.06016 | GCGATTTTAATCCAC CACTTAAA CGGT TTTACGTG TTTTGTTTCTCTACT Cphy_3392 4150904 - 4150548 - | hypothetical protein Cphy_3393 4152223 - 4150901 - | FAD-dependent pyridine nucleotide-disulphide oxidoreductase Cphy_3394 4153947 - 4152217 - | FAD dependent oxidoreductase Cphy_3395 4154158 - 4154739 + | TetR family transcriptional regulator TERM 4624 4154757 - 4154790 + T 100 -11.1 -4.7373 | opp_overlap 4154757 TTATAGAAACAAAAA CAATCGCAAACCCTT TATT ATGGATTTGCGATTG TTTTTAATAAAGTAG TERM 4625 4154790 - 4154757 - T 100 -13.3 -5.42975 | opp_overlap 4154757 TTATAGAAACAAAAA CAATCGCAAACCCTT TATT ATGGATTTGCGATTG TTTTTAATAAAGTAG Cphy_3396 4156332 - 4154932 - | glycoside hydrolase family protein Cphy_3397 4156675 - 4157571 + | AraC family transcriptional regulator TERM 4626 4157607 - 4157633 + T 74 -8.8 -3.34404 | opp_overlap 4157605 4157607 4157618, overlap 4157605 4157617 4157618 ATTCTATATTTAACA GGGAGAACCT AGAGAAC AGGTTCTTCC TATTCTCATTCCTCG Cphy_3398 4159183 - 4157639 - | glycoside hydrolase family protein Cphy_3399 4161427 - 4159229 - | hypothetical protein TERM 4627 4160214 - 4160204 - G 78 -6.8 -4.6902 | opp_overlap 4160205, overlap 4160205 4160208 CCATAATGGTAAAAA GGCA CTG TGCC ACAGATGCATTTCTA TERM 4628 4160547 - 4160578 + g 100 -14.6 -3.83844 | overlap 4160565 TTTGTGAAAGATTGT TCCTTCGTGAAGGA TTGT TCCTTCGTGAAGGA TTGTTCCTTCGTGAA TERM 4629 4160565 - 4160596 + g 100 -14.6 -3.83844 | overlap 4160547 4160583 TTCGTGAAGGATTGT TCCTTCGTGAAGGA TTGT TCCTTCGTGAAGGA TTGTTCCTTCGTAAA TERM 4630 4160583 - 4160614 + g 78 -8.8 -3.81146 | overlap 4160565 TTCGTGAAGGATTGT TCCTTCGTGAAGGA TTGT TCCTTCGTAAAGGA TTGTTCCTTCGAAAA TERM 4631 4160636 - 4160615 - G 77 -10.3 -2.90496 | TTCCTTCGTAAAGGA TTGTTCCTT CGAA AAGGAACAA GTAAAACAAAGGTAA Cphy_3400 4162410 - 4161559 - | binding-protein-dependent transport systems inner membrane component Cphy_3401 4163340 - 4162423 - | binding-protein-dependent transport systems inner membrane component TERM 4632 4163409 - 4163363 - R 79 -8.2 -4.07568 | opp_overlap 4163348 TCCTTCTTGCGAAAA GGACTCTTACCTTTCTTCGTAA TTT CCACAAAAAAGAATAAGAGTCC TAATACACAACATTT Cphy_3402 4164825 - 4163470 - | extracellular solute-binding protein TERM 4633 4165319 - 4165281 - R 100 -7.7 -5.56372 | opp_overlap 4165284, overlap 4165284 AAATCAAAATAAAAA TAAGTCCTTATCAAT TTACTTAGC ATTGATAAGGACTTT CAATTACCTATATTT TERM 4634 4165316 - 4165284 - R 100 -9.4 -4.80077 | opp_overlap 4165284, overlap 4165281 TCAAAATAAAAATAA GTCCTTATCAAT TTACTTAGC ATTGATAAGGAC TTTCAATTACCTATA TERM 4635 4165284 - 4165316 + r 83 -9.4 -3.77666 | opp_overlap 4165284 4165281 TCAAAATAAAAATAA GTCCTTATCAAT TTACTTAGC ATTGATAAGGAC TTTCAATTACCTATA Cphy_3403 4166407 - 4165352 - | hypothetical protein Cphy_3404 4168008 - 4166683 - | glycoside hydrolase family protein Cphy_3405 4168812 - 4168051 - | two component AraC family transcriptional regulator Cphy_3406 4170628 - 4168817 - | histidine kinase internal region Cphy_3407 4171556 - 4170711 - | binding-protein-dependent transport systems inner membrane component Cphy_3408 4172445 - 4171564 - | binding-protein-dependent transport systems inner membrane component Cphy_3409 4174016 - 4172661 - | extracellular solute-binding protein Cphy_3410 4174890 - 4174231 - | hypothetical protein TERM 4636 4175175 - 4175157 - R 100 -8.9 -5.64873 | TTGAAGAATAAAAAA GAGCTGT TATCC ACAGCTC ACTCAAAAAAAGAAA TERM 4637 4175207 - 4175187 - R 88 -6.2 -5.47218 | opp_overlap 4175187 GCTCACTCAAAAAAA GAAACTGT TATCC ACAGTTCC TTCTGATTTATCCAT TERM 4638 4175282 - 4175248 - R 87 -4.5 -5.79595 | opp_overlap 4175261, overlap 4175261 TTCTAAAATAAAAAA TAGCAAAAAACAAGA GATTT TCTCATTTTTCACTA TTAAAACTTCTATTT TERM 4639 4175271 - 4175261 - R 71 -5.4 -4.71318 | opp_overlap 4175261, overlap 4175248 AATAGCAAAAAACAA GAGA TTT TCTC ATTTTTCACTATTAA TERM 4640 4175309 - 4175319 + r 70 -4 -5.00616 | ATTTTCTTTAATTAC TTCA CAT TGAA TTTTTTAAACAAACC TERM 4641 4177552 - 4177566 + r 77 -8.6 -3.57615 | ACACGTACTGACTGA TCCATC AAA GATGGA TTTACGCCCTATTCA TERM 4642 4177729 - 4177740 + r 76 -7.2 -4.2354 | AGGTTCTCTTTCACT CCCC TCCC GGGG TTCTTTTCACCTTTC TERM 4643 4177965 - 4177982 + r 93 -11.3 -3.63895 | opp_overlap 4177964 4177963 TTGCGGTCCATAACC CCGTGGA TAAA TCCACGG TTTAGGCTCCTTCCC TERM 4644 4178698 - 4178709 + r 81 -3 -5.82172 | TTATATATATTCGAA GAAT TCTC ATTC TTTTTTTATATTAAT TERM 4645 4179891 - 4179911 + r 80 -8.9 -3.64371 | opp_overlap 4179890 4179886, overlap 4179892 CAGTTTCAAATGCAG TCCCAGGGT TGA GCCCTGGGC TTTCACATCTGACTT TERM 4646 4179892 - 4179910 + r 89 -12.4 -2.7814 | opp_overlap 4179890 4179886, overlap 4179891 AGTTTCAAATGCAGT CCCAGGGT TGA GCCCTGGG CTTTCACATCTGACT TERM 4647 4180531 - 4180511 - R 90 -9.9 -4.06903 | overlap 4180506 AACTCTCAAATTAAA GTTTTTAAC GAA GTTAAAAAC TGATACTAATTGACG TERM 4648 4180825 - 4180836 + r 71 -3 -5.23016 | opp_overlap 4180825, overlap 4180830 TTTGTTTGTCAAGAA CTTT TTTC AAAG TTTTTTGAATTATTT TERM 4649 4181158 - 4181134 - R 87 -7.9 -4.88687 | GTAAATAAAAAACAA GGCGCTTATGC TTT ACATAAACACC CCCAAAAAAAAGCTG TERM 4650 4181184 - 4181170 - R 95 -5.7 -5.76949 | opp_overlap 4181170 CACCCCCAAAAAAAA GCTGT TATCC ACAGC TCTATACGAAGAATA TERM 4651 4181232 - 4181261 + r 70 -7.3 -3.67175 | gap 1, opp_overlap 4181232, overlap 4181228 TTTATAAAACAAAAA GATGAAGTTGTGAA TTA TTCACC-CTTCATC TTACTTTTAACAGCT TERM 4652 4181261 - 4181232 - R 100 -7.3 -5.54907 | gap 1, opp_overlap 4181232 4181228 TTTATAAAACAAAAA GATGAAGTTGTGAA TTA TTCACC-CTTCATC TTACTTTTAACAGCT TERM 4653 4183568 - 4183582 + r 77 -8.6 -3.57615 | ACACGTACTGACTGA TCCATC AAA GATGGA TTTACGCCCTATTCA TERM 4654 4183745 - 4183756 + r 76 -7.2 -4.2354 | AGGTTCTCTTTCACT CCCC TCCC GGGG TTCTTTTCACCTTTC TERM 4655 4183981 - 4183998 + r 93 -11.3 -3.63895 | opp_overlap 4183980 4183979 TTGCGGTCCATAACC CCGTGGA TAAA TCCACGG TTTAGGCTCCTTCCC TERM 4656 4184714 - 4184725 + r 81 -3 -5.82172 | TTATATATATTCGAA GAAT TCTC ATTC TTTTTTTATATTAAT TERM 4657 4184895 - 4184882 - R 73 -8.1 -3.3782 | opp_overlap 4184881 TATCTATTTAATTAA TCGCC TAAC GGCGA AATTGATAACTCAAC TERM 4658 4185852 - 4185872 + r 80 -8.9 -3.64371 | opp_overlap 4185851 4185847, overlap 4185853 CAGTTTCAAATGCAG TCCCAGGGT TGA GCCCTGGGC TTTCACATCTGACTT TERM 4659 4185853 - 4185871 + r 89 -12.4 -2.7814 | opp_overlap 4185851 4185847, overlap 4185852 AGTTTCAAATGCAGT CCCAGGGT TGA GCCCTGGG CTTTCACATCTGACT TERM 4660 4186492 - 4186472 - R 90 -9.9 -4.06903 | overlap 4186467 AACTCTCAAATTAAA GTTTTTAAC GAA GTTAAAAAC TGATACTAATCGACG TERM 4661 4187347 - 4187322 - R 100 -12.7 -5.24449 | opp_overlap 4187321 4187322 TATAAATTTAAAAAA CGAAACTATGC ATTG GCATAGCTTCG CTTCTAAAAATAACT TERM 4662 4187322 - 4187347 + r 79 -10.5 -2.58663 | opp_overlap 4187322, overlap 4187321 TATAAATTTAAAAAA CGAAACTATGC ATTG GCATAGCTTCG CTTCTAAAAATAACT Cphy_3411 4188086 - 4187460 - | hypothetical protein Cphy_3412 4189334 - 4188117 - | putative oxidoreductase Cphy_3413 4189655 - 4190674 + | L-asparaginase, type I TERM 4663 4190696 - 4190722 + F 100 -15.4 -4.83615 | opp_overlap 4190696 TTTCATATGATGATA TTGGAGTATTCT TAA AGAATACTCCAA TTTTTATGAAAGGTA TERM 4664 4190722 - 4190696 - f 100 -15.4 -2.84634 | opp_overlap 4190696 TTTCATATGATGATA TTGGAGTATTCT TAA AGAATACTCCAA TTTTTATGAAAGGTA Cphy_3414 4191105 - 4192949 + | glucosamine--fructose-6-phosphate aminotransferase, isomerizing TERM 4665 4193077 - 4193019 - T 100 -16.3 -3.9941 | opp_overlap 4193020, overlap 4193020 GTGTTGATAATTAAA GTGAAGTGCACCTCCAGATGTTAGATA AAATA TATCTATCATTTTGAGGTGCACTTCAT TATTTTCATCTTTAT TERM 4666 4193076 - 4193020 - T 100 -19.8 -2.99325 | opp_overlap 4193020, overlap 4193019 TGTTGATAATTAAAG TGAAGTGCACCTCCAGATGTTAGATA AAATA TATCTATCATTTTGAGGTGCACTTCA TTATTTTCATCTTTA TERM 4667 4193020 - 4193076 + T 100 -22 -4.34993 | opp_overlap 4193020 4193019 TGTTGATAATTAAAG TGAAGTGCACCTCCAGATGTTAGATA AAATA TATCTATCATTTTGAGGTGCACTTCA TTATTTTCATCTTTA Cphy_3415 4194132 - 4193278 - | hypothetical protein TERM 4668 4194378 - 4194351 - H 86 -7.2 -4.76041 | opp_overlap 4194351 4194349 4194341 4194354 TAGATTTACTAAAAA CAAGAAAAAG CTCGCTTT CTTTTTCTTG TCTTGAATAATTTGA Cphy_3416 4194514 - 4195974 + | phospholipase D/transphosphatidylase TERM 4669 4196070 - 4196121 + T 100 -15.6 -5.70522 | gap 1, opp_overlap 4196073 4196078, overlap 4196078 TTCACTTGTTATGGA TAA-GAAAACGAAGAGGAGTGAGAT AAC ATCTCATTCCCCTTCGTTTTTATTA TTTTTTATTATTATT TERM 4670 4196117 - 4196073 - T 100 -16.7 -3.35798 | opp_overlap 4196070 4196078, overlap 4196078 ACTTGTTATGGATAA GAAAACGAAGAGGAGTGAGAT AAC ATCTCATTCCCCTTCGTTTTT ATTATTTTTTATTAT TERM 4671 4196112 - 4196078 - T 100 -16.6 -4.79352 | opp_overlap 4196070 4196078, overlap 4196073 TTATGGATAAGAAAA CGAAGAGGAGTGAGAT AAC ATCTCATTCCCCTTCG TTTTTATTATTTTTT TERM 4672 4196078 - 4196112 + T 100 -16.6 -5.54403 | opp_overlap 4196078 4196073, overlap 4196070 TTATGGATAAGAAAA CGAAGAGGAGTGAGAT AAC ATCTCATTCCCCTTCG TTTTTATTATTTTTT Cphy_3417 4197085 - 4196207 - | Hsp33 protein Cphy_3418 4197978 - 4197151 - | methyltransferase type 12 TERM 4673 4198119 - 4198138 + r 74 -9.4 -2.705 | overlap 4198115 4198116 4198121 GCAGTTGATTTTCCA GATGACAT CTTG ATGTCATC TAATATCATCTTGAT Cphy_3419 4199833 - 4198367 - | xylulokinase TERM 4674 4200013 - 4200041 + H 78 -9.2 -3.48668 | opp_overlap 4200013 4200037 ACATCTCCCGTAAGA TTATATTGTTTA TTTAC TAAACAATATAA TTATGGTATAATCAT TERM 4675 4200041 - 4200013 - H 74 -9.2 -3.02263 | opp_overlap 4200013, overlap 4200037 ACATCTCCCGTAAGA TTATATTGTTTA TTTAC TAAACAATATAA TTATGGTATAATCAT TERM 4676 4200970 - 4200952 - g 78 -10.4 -2.96321 | opp_overlap 4200950 4200948, overlap 4200949 4200954 GCTATTAAAAGAGTA TAGTGAAG ATG CTTCACTA GATGATTTGTTGTTA TERM 4677 4200968 - 4200954 - g 70 -8.6 -3.02856 | opp_overlap 4200950 4200948, overlap 4200952 4200949 TATTAAAAGAGTATA GTGAAG ATG CTTCAC TAGATGATTTGTTGT Cphy_3420 4200152 - 4201297 + | ROK family protein TERM 4678 4201461 - 4201403 - T 100 -20.8 -4.48987 | opp_overlap 4201403 TTGTTATAACTAAAA GACGCATAAGAAATTTTAACATAAAGAT CAT ATCTTCATGTTAGAATTACCTATGCGTC TTGTTTTAAATATTA TERM 4679 4201403 - 4201461 + T 100 -18.6 -4.25606 | opp_overlap 4201403 TTGTTATAACTAAAA GACGCATAAGAAATTTTAACATAAAGAT CAT ATCTTCATGTTAGAATTACCTATGCGTC TTGTTTTAAATATTA Cphy_3421 4202412 - 4201477 - | diacylglycerol kinase catalytic region TERM 4680 4202441 - 4202455 + r 76 -7.2 -4.21922 | overlap 4202440 CTTTCTATTCTTCCT TGATTG TAT CAATCA TTTGCTTTTCCATAG Cphy_3422 4202645 - 4202430 - | hypothetical protein Cphy_3423 4206939 - 4202806 - | recombination helicase AddA Cphy_3424 4210411 - 4206896 - | ATP-dependent nuclease subunit B TERM 4681 4208002 - 4207989 - GH 79 -6.7 -4.70169 | CCATACTGAAGAAAA TGTGC AAAA GCACA TGCCGCATATTTTTC TERM 4682 4208666 - 4208650 - GH 70 -7.3 -3.62539 | overlap 4208646 4208651 GAGGAATCAAACCAA CTTTCGC TTC GCGAAAA CCCGTATCAAGAATA Cphy_3425 4210545 - 4211021 + | hypothetical protein TERM 4683 4211075 - 4211118 + T 100 -20.6 -3.99592 | opp_overlap 4211081, overlap 4211073 4211081 CCTGACTTTCTTTCC CTAAAATCGGGTTGTTGCAA GTAA TTGCAGCAACCCGATTTTTG TTTCTAATGATAAAT TERM 4684 4211081 - 4211112 + T 100 -18.2 -5.40464 | opp_overlap 4211081, overlap 4211073 4211075 TTTCTTTCCCTAAAA TCGGGTTGTTGCAA GTAA TTGCAGCAACCCGA TTTTTGTTTCTAATG TERM 4685 4211112 - 4211081 - T 100 -16 -4.07568 | opp_overlap 4211073 4211081 4211075 TTTCTTTCCCTAAAA TCGGGTTGTTGCAA GTAA TTGCAGCAACCCGA TTTTTGTTTCTAATG Cphy_3426 4213156 - 4211213 - | NAD+ synthetase TERM 4686 4212705 - 4212718 + g 76 -2.3 -5.43621 | opp_overlap 4212705, overlap 4212706 CAAAAGATTAAATTA CTGCC AAAT GGCAC TTTTTTATGATTTAT Cphy_3427 4213553 - 4214494 + | radical SAM domain-containing protein TERM 4687 4214509 - 4214498 - T 78 -5.8 -4.83615 | overlap 4214501 GAGGGGTTATAAAAA CACC CCAG GGTG AGTGCTAATCCGCCT TERM 4688 4214585 - 4214570 - T 100 -9 -5.85737 | ATATTAATAAAAAAA GACAGC TTAC GCTGTC TAAAAAATCATTTTT Cphy_3428 4216421 - 4214880 - | integral membrane sensor signal transduction histidine kinase Cphy_3429 4217119 - 4216418 - | two component transcriptional regulator Cphy_3430 4217431 - 4218156 + | Ig domain-containing protein TERM 4689 4218170 - 4218192 + F 100 -10.7 -5.43487 | opp_overlap 4218167 4218174 AAAAAATAACATGGA TAGACCATC AATTC GATGGTCTA TTTTTTCTATAATTT Cphy_3431 4218411 - 4219820 + | membrane bound O-acyl transferase MBOAT family protein Cphy_3432 4219925 - 4221250 + | hypothetical protein TERM 4690 4221417 - 4221466 + F 85 -8.2 -4.4891 | gap 1, opp_overlap 4221425, overlap 4221424 TTCTAAACGGCTCTA TAATAAATGTTGGGGTATGTGAA ATTAA TTCGC-TACTCCAACGTTTTTTA TTTTATAATAATAAA TERM 4691 4221424 - 4221459 + F 100 -6.3 -5.86976 | gap 1, opp_overlap 4221425, overlap 4221417 CGGCTCTATAATAAA TGTTGGGGTATGTGAA ATTAA TTCGC-TACTCCAACG TTTTTTATTTTATAA Cphy_3433 4221530 - 4222705 + | transposase IS204/IS1001/IS1096/IS1165 family protein Cphy_3434 4226880 - 4222897 - | metallophosphoesterase TERM 4692 4226827 - 4226837 + g 73 -6.8 -4.35474 | opp_overlap 4226807 4226823 4226826 TGTCATAGCAACAGC CAGC AAT GCTG TTATTGTTTTCTTTA TERM 4693 4227097 - 4227048 - R 100 -13.2 -4.40572 | gap 1, opp_overlap 4227054, overlap 4227054 4227057 ACAATTTCGACAAAA GATTAAGAAGTTCTAAGACTCCG CATTT CCGAGTCTTAGAACTTCTTT-TC ATACTATATCTCTTT TERM 4694 4227092 - 4227054 - R 100 -17.7 -3.57825 | opp_overlap 4227054, overlap 4227048 4227057 TCGACAAAAGATTAA GAAGTTCTAAGACTCCG CATTT CCGAGTCTTAGAACTTC TTTTCATACTATATC TERM 4695 4227054 - 4227092 + r 100 -17.7 -4.34345 | opp_overlap 4227048 4227054 4227057 TCGACAAAAGATTAA GAAGTTCTAAGACTCCG CATTT CCGAGTCTTAGAACTTC TTTTCATACTATATC TERM 4696 4227089 - 4227057 - R 100 -13.6 -3.90315 | opp_overlap 4227054, overlap 4227054 4227048 ACAAAAGATTAAGAA GTTCTAAGACTCCG CATTT CCGAGTCTTAGAAC TTCTTTTCATACTAT Cphy_3435 4227752 - 4227378 - | hypothetical protein TERM 4697 4228127 - 4228114 - g 86 -5.3 -5.29716 | opp_overlap 4228114 TGAATATAAGAAAAA GGATA TCCA TATCC TTGGTTTATTTGTCA Cphy_3436 4227884 - 4228747 + | phosphotransferase domain-containing protein TERM 4698 4228923 - 4228865 - T 71 -8.3 -3.21235 | gap 1, opp_overlap 4228865 4228872 TTATAATGAATAAAG CTCTGCACCTAGTATCTGGGTAAGTTCC AATG GAAACCT-CCTGAATACTTGATGCAGAG CCTTTTTTACTCCTA Cphy_3437 4229308 - 4228976 - | preprotein translocase, YajC subunit Cphy_3438 4230492 - 4229356 - | queuine tRNA-ribosyltransferase TERM 4699 4230866 - 4230889 + r 89 -10.4 -3.77264 | opp_overlap 4230866, overlap 4230858 AAATTACAATAGAAA TCCGTCTTAT CGAG ATAGGACGGA TTCTTAGATCTTTTA TERM 4700 4230889 - 4230866 - R 83 -8.2 -4.31815 | opp_overlap 4230866 4230858 AAATTACAATAGAAA TCCGTCTTAT CGAG ATAGGACGGA TTCTTAGATCTTTTA TERM 4701 4230909 - 4230950 + r 70 -6.2 -4.22524 | opp_overlap 4230909, overlap 4230905 4230904 TAGATCTTTTATGAA CTAATAAGTATCAAAA CAAATAAAAT TTATGATACTTATTAG TTTAGTTTTCCATGT Cphy_3439 4231854 - 4230985 - | methionine aminopeptidase, type I TERM 4702 4232077 - 4232120 + r 93 -9.8 -4.58685 | opp_overlap 4232077 4232117 TCTTGTCTTAAAAAA TAAGTCTAATCAAGTATCTC CTAA GAAATTCTTGACTAGACTTA TTTTTAAGAAGCTTT TERM 4703 4232120 - 4232077 - R 100 -14.2 -5.00616 | opp_overlap 4232077, overlap 4232117 TCTTGTCTTAAAAAA TAAGTCTAATCAAGTATCTC CTAA GAAATTCTTGACTAGACTTA TTTTTAAGAAGCTTT Cphy_3440 4232762 - 4232124 - | V-type ATPase, D subunit Cphy_3441 4234152 - 4232767 - | V-type ATP synthase subunit B TERM 4704 4233634 - 4233612 - G 71 -4.2 -4.7373 | overlap 4233615 CCATTGCAGCAAAAA CAATAACGAA TTG TTCGTCACTA TCATCACCAAGAGAA TERM 4705 4233631 - 4233615 - G 73 -5.9 -4.47707 | overlap 4233612 TTGCAGCAAAAACAA TAACGAA TTG TTCGTCA CTATCATCACCAAGA Cphy_3442 4235932 - 4234166 - | V-type ATP synthase subunit A Cphy_3443 4236512 - 4235925 - | hypothetical protein Cphy_3444 4236836 - 4236528 - | vacuolar H+transporting two-sector ATPase F subunit Cphy_3445 4237368 - 4236922 - | H+transporting two-sector ATPase C subunit TERM 4706 4237260 - 4237248 - G 74 -2.7 -5.41787 | opp_overlap 4237257, overlap 4237257 CAAAAAATACAAAAA TTTGA GAA CCAAA AACCCATTTTGTAGT Cphy_3446 4239301 - 4237403 - | V-type ATPase 116 kDa subunit Cphy_3447 4240405 - 4239365 - | H+transporting two-sector ATPase C (AC39) subunit TERM 4707 4239787 - 4239798 + g 76 -5.8 -4.62803 | TTCTTGTACCGATTG CCCT TGTG AGGG TTTCTTGTTCTTTCC Cphy_3448 4240721 - 4240410 - | hypothetical protein TERM 4708 4241935 - 4241974 + r 72 -5 -4.91511 | opp_overlap 4241935 TTTGTTACAGAAAAA GGTACCTTGAAATGGCTT TTAC AAACCAAATCAAGATACC TTTTTCTGCTACCAT TERM 4709 4241974 - 4241935 - R 100 -9.4 -4.96848 | opp_overlap 4241935 TTTGTTACAGAAAAA GGTACCTTGAAATGGCTT TTAC AAACCAAATCAAGATACC TTTTTCTGCTACCAT Cphy_3449 4243116 - 4242103 - | asparagine synthetase AsnA TERM 4710 4243463 - 4243438 - R 100 -10.5 -5.26918 | opp_overlap 4243440 ACACTCGATAAAAAA GATGCACCACC AAAC GATGATGCATC TTCACCTAAAATATA Cphy_3450 4245483 - 4243489 - | methyl-accepting chemotaxis sensory transducer TERM 4711 4244859 - 4244875 + g 74 -5.1 -4.87273 | TTGGTGAGAACTGGT TCATGAC ATA GTCTTGA TTTTTATGACCTATT TERM 4712 4245946 - 4245935 - H 77 -3 -5.57729 | AAATAATATAAAAAA TGTT GAAA AACA ATGTAACATTTTATA Cphy_3451 4246002 - 4246562 + | integrase family protein TERM 4713 4246817 - 4246835 + T 100 -7.5 -5.96894 | TGTATATTTACTCTT GTACCTT TTGTT AAGGTAC TTTTTTTATTTGAAT Cphy_3452 4248374 - 4247037 - | MATE efflux family protein TERM 4714 4247304 - 4247294 - G 75 -5.4 -4.86773 | overlap 4247285 TAAAACCAGCAAAAA CACA TGC TGTG AAGTAAATTTTCAAA TERM 4715 4248451 - 4248403 - R 100 -7.1 -5.71295 | gap 2, opp_overlap 4248403 ATACAAAAATAAAAA GCGCCAGAGTTTCATATCTTCTA TGGCC TA-ATGATATGAAA-TCTGACGC TTAACTTCTTTACTC TERM 4716 4248496 - 4248476 - R 73 -7.7 -3.73224 | opp_overlap 4248475 4248479, overlap 4248479 TTACTCGGCAGTAAA GAATAAGTC AAT AACTTATTC AATTTAGCGATTAGT TERM 4717 4248642 - 4248666 + r 93 -10.1 -4.63218 | opp_overlap 4248642, overlap 4248644 CAAGGATAACAAAAA GCCTTGAAAAC TAT GTTTTCAAGAC TTTTATTAACAGGGG TERM 4718 4248666 - 4248642 - R 100 -12.3 -5.24416 | opp_overlap 4248642 4248644 CAAGGATAACAAAAA GCCTTGAAAAC TAT GTTTTCAAGAC TTTTATTAACAGGGG TERM 4719 4248644 - 4248664 + r 86 -11.3 -2.62244 | opp_overlap 4248642, overlap 4248642 AGGATAACAAAAAGC CTTGAAAAC TAT GTTTTCAAG ACTTTTATTAACAGG TERM 4720 4249036 - 4248992 - R 100 -11.7 -4.39426 | opp_overlap 4249011, overlap 4248993 GACAGCTTTACAAAA GGAGGTGTCTCGAAATGTA TGTAATC TACATTTCAAAACACCTCT CAACTTCTTTAAAAA TERM 4721 4249035 - 4248993 - R 100 -15.2 -3.23174 | opp_overlap 4249011, overlap 4248992 ACAGCTTTACAAAAG GAGGTGTCTCGAAATGTA TGTAATC TACATTTCAAAACACCTC TCAACTTCTTTAAAA Cphy_3453 4250549 - 4249140 - | FAD dependent oxidoreductase Cphy_3454 4252570 - 4250828 - | methyl-accepting chemotaxis sensory transducer TERM 4722 4252665 - 4252683 + r 74 -4 -5.16472 | opp_overlap 4252669 TTTAATATTTTCTTA TAATTATT AAC AATAGTTA TTTTTTACCATTTTT TERM 4723 4254350 - 4254372 + r 76 -5.6 -4.99035 | TCCTCTGATGCTTTC GGAATCTCAA GCT TTCGGATTCC TTTTTCTGTACGTGC Cphy_3457 4256462 - 4254705 - | Pyrrolo-quinoline quinone TERM 4724 4255209 - 4255220 + g 77 -3 -5.48825 | CTTAAGGGTTGTTGC TACA TAGA TGTA TTTTTTTCCATCCTC TERM 4725 4255574 - 4255560 - G 71 -8.6 -3.13177 | AGATTCCACATGGAA GATAGC TGA GCTATC ATAAGCATGCCAAAT Cphy_3458 4257216 - 4256803 - | hypothetical protein Cphy_3459 4258639 - 4257281 - | DNA repair protein RadA TERM 4726 4258246 - 4258201 - G 85 -9.7 -3.85698 | opp_overlap 4258202 4258205 4258207, overlap 4258205 4258207 GGTTTGTTTCAGAAA GTAATAGCAGTTCGCCTTGGA AGGT TCCAAGGCGCTCTGCTCTCAT TTTAATTTGTTGTTG TERM 4727 4258202 - 4258245 + g 100 -11 -4.71708 | opp_overlap 4258201 4258205 4258207, overlap 4258205 4258207 GTTTGTTTCAGAAAG TAATAGCAGTTCGCCTTGGA AGGT TCCAAGGCGCTCTGCTCTCA TTTTAATTTGTTGTT TERM 4728 4258205 - 4258242 + g 90 -12.7 -3.24825 | opp_overlap 4258205 4258201 4258207, overlap 4258202 4258207 TGTTTCAGAAAGTAA TAGCAGTTCGCCTTGGA AGGT TCCAAGGCGCTCTGCTC TCATTTTAATTTGTT TERM 4729 4258242 - 4258205 - G 95 -12.7 -3.6053 | opp_overlap 4258202 4258205 4258207, overlap 4258201 4258207 TGTTTCAGAAAGTAA TAGCAGTTCGCCTTGGA AGGT TCCAAGGCGCTCTGCTC TCATTTTAATTTGTT TERM 4730 4258240 - 4258207 - G 100 -15.3 -3.37915 | opp_overlap 4258205 4258202 4258207, overlap 4258205 4258201 TTTCAGAAAGTAATA GCAGTTCGCCTTGGA AGGT TCCAAGGCGCTCTGC TCTCATTTTAATTTG TERM 4731 4258207 - 4258240 + g 100 -15.3 -3.16315 | opp_overlap 4258207 4258205 4258201, overlap 4258205 4258202 TTTCAGAAAGTAATA GCAGTTCGCCTTGGA AGGT TCCAAGGCGCTCTGC TCTCATTTTAATTTG TERM 4732 4258457 - 4258471 + g 90 -8.6 -4.5394 | opp_overlap 4258459 TTCTTCTTCCGTACA TACCTC AGA GAGGTA TTTTGGTGTTTCTGT Cphy_3460 4259096 - 4258683 - | hypothetical protein TERM 4733 4258863 - 4258874 + g 71 -4.4 -4.8667 | opp_overlap 4258863 GTTGCCCTTTACAAA GAAG CTAA CTTC TTTTTCTGAAATATC Cphy_3461 4261840 - 4259366 - | ATPase Cphy_3462 4262890 - 4261859 - | ATP:guanido phosphotransferase TERM 4734 4262011 - 4261976 - G 90 -13 -3.21595 | gap 1, opp_overlap 4261986, overlap 4261984 AACCTCCATCATTAA CTTATGAATATTAAGTG GCT CACTTAAT-TTCATAAG CCCTGCATCCATTCC TERM 4735 4261986 - 4262002 + g 74 -8.1 -3.73224 | opp_overlap 4261984 4261976 ATTAACTTATGAATA TTAAGTG GCT CACTTAA TTTCATAAGCCCTGC Cphy_3463 4263427 - 4262906 - | UvrB/UvrC protein TERM 4736 4263337 - 4263357 + g 70 -3.3 -4.96468 | opp_overlap 4263344, overlap 4263339 TTTTCGCAGCGCATT CGGAACA CAGATGC TGTTCTG TTTTCTTTCCGTTTA Cphy_3464 4263818 - 4263438 - | GntR family transcriptional regulator Cphy_3465 4265307 - 4264057 - | hypothetical protein TERM 4737 4264230 - 4264244 + g 70 -5.7 -4.38447 | overlap 4264224 TATTGTTAGCAGCAG GAGAG CTGTC CTCTC TTTCTATTATTGTCT Cphy_3466 4269316 - 4265471 - | SH3 type 3 domain-containing protein TERM 4738 4267169 - 4267194 + g 80 -11.1 -3.21747 | overlap 4267157 4267176 TGGTTTTGGCGTCGT CGACGGTGCCA CAGT TGGCTTCGTCG TTGGTGCTACAGTCG TERM 4739 4269289 - 4269304 + g 80 -6 -5.06103 | overlap 4269290 TATTAACCTCAATTC TGGCGC TATG GCGCCC TTTTTTAACCATTGT TERM 4740 4269290 - 4269303 + g 78 -9.5 -3.62577 | overlap 4269289 ATTAACCTCAATTCT GGCGC TATG GCGCC CTTTTTTAACCATTG Cphy_3467 4270953 - 4269682 - | phosphoribosylamine--glycine ligase Cphy_3468 4271632 - 4271009 - | phosphoribosylglycinamide formyltransferase Cphy_3469 4272651 - 4271626 - | phosphoribosylformylglycinamidine cyclo-ligase Cphy_3470 4275691 - 4273097 - | FAD-dependent pyridine nucleotide-disulphide oxidoreductase TERM 4741 4273760 - 4273778 + g 73 -7.4 -4.05714 | overlap 4273755 TCCATCCTTACATTT GGAAAGTG TTT CACTTACC TTTATAATTGGGCCT TERM 4742 4276231 - 4276189 - R 93 -8.7 -4.75174 | gap 1, opp_overlap 4276189 4276188 CACTTAATTTAAAAA GAGCTATTACAA-AATAGGC TTAA ACCTAACGTTGTAATAGCTC CTTTGTTTTACTTAG Cphy_3471 4276811 - 4276305 - | phosphoribosylaminoimidazole carboxylase, catalytic subunit Cphy_3472 4278992 - 4276911 - | leucyl aminopeptidase (aminopeptidase T)-like protein Cphy_3473 4279398 - 4279075 - | hypothetical protein Cphy_3474 4279886 - 4279440 - | VanZ family protein TERM 4743 4280130 - 4280157 + r 91 -12.2 -3.56099 | gap 1, opp_overlap 4280130 AGAAAGCACAAAAAA TCTCCAACCAATG AAA CAT-GGTTGGAGA TTTAAAAACATTATG TERM 4744 4280157 - 4280130 - R 100 -12.2 -5.43621 | gap 1, opp_overlap 4280130 AGAAAGCACAAAAAA TCTCCAACCAATG AAA CAT-GGTTGGAGA TTTAAAAACATTATG Cphy_3475 4282776 - 4280248 - | Ig domain-containing protein TERM 4745 4282946 - 4282973 + r 81 -9.9 -3.14026 | opp_overlap 4282951, overlap 4282951 TATTTATTATCATGA AAAAACCGGGC TTATTT GCCCGGTTTTC TTAACTATAAATGTA TERM 4746 4282968 - 4282951 - R 100 -9.8 -5.19212 | opp_overlap 4282946 4282951 ATTATCATGAAAAAA CCGGGC TTATTT GCCCGG TTTTCTTAACTATAA TERM 4747 4282951 - 4282968 + r 93 -9.8 -4.70169 | opp_overlap 4282951, overlap 4282946 ATTATCATGAAAAAA CCGGGC TTATTT GCCCGG TTTTCTTAACTATAA Cphy_3476 4285482 - 4283044 - | phenylalanyl-tRNA synthetase, beta subunit TERM 4748 4284314 - 4284324 + g 73 -5.4 -4.64657 | GCCATTGCTGTGTTT GGAT CTA ATCC TTTTTCAAACTTTGA Cphy_3477 4286548 - 4285529 - | phenylalanyl-tRNA synthetase, alpha subunit TERM 4749 4286769 - 4286745 - H 100 -14.3 -6.14618 | TATAAAATAAAAAAA CTCCGTCCCCA AAA CAGGGACGGAG TATAAAAGCTACCCG Cphy_3478 4287167 - 4288036 + | ribonuclease BN TERM 4750 4288105 - 4288128 + T 100 -9.7 -5.72207 | opp_overlap 4288103 GAATTTTAATATATT TTGAGCAGA CCATTC TCTGCTCAA TTTTTTTAATTTGAC TERM 4751 4288244 - 4288276 + T 100 -17.9 -4.19506 | opp_overlap 4288244 4288247 4288253, overlap 4288247 4288253 CCAATTTATGCAAAA CAAGGAAAAGTTCGC AAA GCGTACTTTTCCTTG TTTTAAAGTTACAAT TERM 4752 4288276 - 4288244 - T 100 -17.9 -4.21275 | opp_overlap 4288244 4288247 4288253, overlap 4288247 4288253 CCAATTTATGCAAAA CAAGGAAAAGTTCGC AAA GCGTACTTTTCCTTG TTTTAAAGTTACAAT TERM 4753 4288247 - 4288273 + T 100 -13.8 -4.21933 | opp_overlap 4288247 4288244 4288253, overlap 4288244 4288253 ATTTATGCAAAACAA GGAAAAGTTCGC AAA GCGTACTTTTCC TTGTTTTAAAGTTAC TERM 4754 4288273 - 4288247 - T 100 -13.8 -4.22214 | opp_overlap 4288244 4288247 4288253, overlap 4288244 4288253 ATTTATGCAAAACAA GGAAAAGTTCGC AAA GCGTACTTTTCC TTGTTTTAAAGTTAC TERM 4755 4288253 - 4288267 + T 71 -5.6 -4.67123 | opp_overlap 4288247 4288244 4288253, overlap 4288247 4288244 GCAAAACAAGGAAAA GTTCGC AAA GCGTAC TTTTCCTTGTTTTAA TERM 4756 4288267 - 4288253 - T 71 -5.6 -4.67123 | opp_overlap 4288253 4288247 4288244, overlap 4288247 4288244 GCAAAACAAGGAAAA GTTCGC AAA GCGTAC TTTTCCTTGTTTTAA Cphy_3479 4290862 - 4288304 - | SpoIID/LytB domain-containing protein TERM 4757 4291167 - 4291135 - R 95 -10.7 -4.21631 | opp_overlap 4291135 4291138, overlap 4291138 AACCCATTTAATAAA CAAGAAAAAGTACAC TTT GCGAACTTTTCCTTG TCATATACATAAAAA TERM 4758 4291164 - 4291138 - R 74 -6.6 -4.22554 | opp_overlap 4291135 4291138, overlap 4291135 CCATTTAATAAACAA GAAAAAGTACAC TTT GCGAACTTTTCC TTGTCATATACATAA TERM 4759 4291239 - 4291187 - R 80 -6 -5.02777 | gap 2, opp_overlap 4291186 4291187 ATACATAAAAAGAAA GGAGCTGTTGTCATGGTATCTATT TAAAGCG AATAAATACT-T-ACAACAGCTCC CTTTTCTTATTAACA Cphy_3480 4292287 - 4291292 - | tryptophanyl-tRNA synthetase TERM 4760 4292383 - 4292352 - R 100 -10.9 -5.9667 | AAAAAGATAAAAAAA GCTCCTGCCCCTG CTATTT CAGGGACAAAAGC CTAAACTTCTGCGGT Cphy_3481 4293530 - 4292775 - | dihydrodipicolinate reductase TERM 4761 4293227 - 4293241 + g 78 -6.4 -4.66318 | overlap 4293221 GGATTGCAACTTCTT TCGAGG CTT CTTCGA TTTTCTTAAGATCCT TERM 4762 4293564 - 4293596 + r 90 -10.1 -4.12603 | gap 1, overlap 4293565 4293566 CCTTTTTATCTGTAT TA-GCAGGGAATTG ATTTAA CAATTCCCTGCATA TTATTCTTTCATAGA TERM 4763 4293565 - 4293594 + r 89 -10.8 -3.65071 | overlap 4293564 4293566 CTTTTTATCTGTATT AGCAGGGAATTG ATTTAA CAATTCCCTGCA TATTATTCTTTCATA TERM 4764 4293566 - 4293593 + r 100 -14.3 -2.77958 | overlap 4293565 4293564 TTTTTATCTGTATTA GCAGGGAATTG ATTTAA CAATTCCCTGC ATATTATTCTTTCAT TERM 4765 4293601 - 4293615 + r 72 -7.2 -3.88232 | opp_overlap 4293600 TTCCCTGCATATTAT TCTTTC ATA GAAAGA TTCTTCTATACCAAA Cphy_3482 4294549 - 4293665 - | dihydrodipicolinate synthase TERM 4766 4294602 - 4294586 - R 90 -5.8 -5.61596 | ATTGGCATAAAAAAA GCCGAC GCGGA GTCGAC ACTAAAGAATTCTAC TERM 4767 4294973 - 4294998 + r 88 -6.9 -5.31072 | opp_overlap 4294976, overlap 4294976 TATTCGTACATAAAA AAAGGGTGTTG CTTC TAACACCCTTC TTTTTATTATGTTAT TERM 4768 4294976 - 4294995 + r 89 -8.6 -4.69868 | opp_overlap 4294976, overlap 4294973 TCGTACATAAAAAAA GGGTGTTG CTTC TAACACCC TTCTTTTTATTATGT TERM 4769 4294995 - 4294976 - R 100 -7.9 -5.71712 | opp_overlap 4294976 4294973 TCGTACATAAAAAAA GGGTGTT GCTTCT AACACCC TTCTTTTTATTATGT Cphy_3483 4295699 - 4295064 - | single-strand DNA-binding protein TERM 4770 4296360 - 4296327 - H 76 -9.7 -3.07104 | TTATAACCATATACA CTTCTCAATCAAAGC TCAC ACTTCGCTTGAGAAG CACGCTTTTCTTAAG TERM 4771 4296504 - 4296491 - H 74 -5.3 -4.90869 | opp_overlap 4296491, overlap 4296494 ACCATGAAGTAAAAA CAAGA ATTT TCTTG TAAATTCATGAAAAT Cphy_3484 4296587 - 4298413 + | GTP-binding protein TypA TERM 4772 4298423 - 4298454 + T 100 -11 -4.77567 | opp_overlap 4298423 4298424, overlap 4298424 AATTAATTATAAGAA TCCCAAACTCCTTA ACCC TAAGAAGTTTGGGG TTTTCTTATGCAAAT TERM 4773 4298454 - 4298423 - T 90 -11 -3.90843 | opp_overlap 4298423 4298424, overlap 4298424 AATTAATTATAAGAA TCCCAAACTCCTTA ACCC TAAGAAGTTTGGGG TTTTCTTATGCAAAT TERM 4774 4298424 - 4298453 + T 91 -12.3 -3.45817 | opp_overlap 4298423 4298424, overlap 4298423 ATTAATTATAAGAAT CCCAAACTCCTTA ACCC TAAGAAGTTTGGG GTTTTCTTATGCAAA TERM 4775 4298453 - 4298424 - T 100 -14.5 -2.93422 | opp_overlap 4298424 4298423, overlap 4298423 ATTAATTATAAGAAT CCCAAACTCCTTA ACCC TAAGAAGTTTGGG GTTTTCTTATGCAAA Cphy_3485 4299581 - 4298475 - | peptidase T-like protein TERM 4776 4299202 - 4299216 + g 81 -5.7 -5.09221 | TCAATACTTCGATGA GGAAC CCCTT GTTCC TTTATTTTTCTTATC Cphy_3486 4300455 - 4299694 - | UBA/THIF-type NAD/FAD binding protein TERM 4777 4299882 - 4299864 - G 73 -7.4 -4.0162 | opp_overlap 4299864 4299863 4299866 GTGCCATATCAGAAA GAGGCTGT CTA ACAGGCTC CTTTGAATATACCAC TERM 4778 4300731 - 4300769 + r 85 -9 -4.08872 | opp_overlap 4300731 AGATGTAACTAAAAA GCAGTTCACGAACAAA ATAATTC TTAATTCGTGAACTGC TTTCCTTATGTATTT TERM 4779 4300769 - 4300731 - R 100 -11.9 -4.89009 | opp_overlap 4300731 AGATGTAACTAAAAA GCAGTTCACGAACAAAA TAATT CTTAATTCGTGAACTGC TTTCCTTATGTATTT Cphy_3487 4301628 - 4300804 - | hypothetical protein Cphy_3488 4302838 - 4301714 - | sporulation integral membrane protein YtvI Cphy_3489 4303914 - 4303072 - | ABC-3 protein TERM 4780 4303897 - 4303871 - G 82 -6.6 -4.97158 | opp_overlap 4303876, overlap 4303876 TTATAGGAAATAAAA TCGAACGGAAGC ACT GCTTCCATTAAA TGATAAATTGTATCC TERM 4781 4303892 - 4303876 - G 75 -8.7 -3.48914 | opp_overlap 4303876, overlap 4303871 GGAAATAAAATCGAA CGGAAGC ACT GCTTCCA TTAAATGATAAATTG Cphy_3490 4304774 - 4303959 - | ABC transporter related Cphy_3491 4305807 - 4304836 - | periplasmic solute binding protein Cphy_3492 4306856 - 4305975 - | hypothetical protein TERM 4782 4306657 - 4306645 - G 76 -6.3 -4.64334 | opp_overlap 4306645 AAGGTCTCAATAAAA TAGGA TAG TCCTA TAATTGCTGCTGCCA TERM 4783 4307221 - 4307194 - R 95 -10.6 -4.7254 | opp_overlap 4307197, overlap 4307197 AGTGGCGAGTAAAAA TAAGGACCGGCT ATAA AGCCGATCCTTG AGTCATTTACCACAT TERM 4784 4307197 - 4307218 + r 81 -10.1 -3.1634 | opp_overlap 4307194 4307197 GGCGAGTAAAAATAA GGACCGGCT ATAA AGCCGATCC TTGAGTCATTTACCA TERM 4785 4307218 - 4307197 - R 100 -12.3 -4.47707 | opp_overlap 4307197, overlap 4307194 GGCGAGTAAAAATAA GGACCGGCT ATAA AGCCGATCC TTGAGTCATTTACCA Cphy_3493 4309122 - 4308034 - | acyltransferase 3 TERM 4786 4308328 - 4308304 - G 85 -3 -5.79595 | opp_overlap 4308309 CTTGAAAATAAAAAA TACTATTATA GCCAT TATAATCGTA TAAATAATGTGTGAT TERM 4787 4309595 - 4309571 - R 100 -8 -5.5112 | opp_overlap 4309571 GTTACGAATAAAAAA TGACTCCTAA TCTTC TTAGAAGTCA TTTCAATTGGTATTT Cphy_3494 4311578 - 4309695 - | polysaccharide biosynthesis protein CapD TERM 4788 4309816 - 4309845 + g 78 -9.5 -3.57561 | opp_overlap 4309822, overlap 4309818 GTGTATAACTCCTCT AATTGATGATGAA ACTT TTCATCATCAATC TTTAAAGGCTTCCCA TERM 4789 4309818 - 4309843 + g 89 -12.1 -3.36569 | opp_overlap 4309822, overlap 4309816 GTATAACTCCTCTAA TTGATGATGAA ACTT TTCATCATCAA TCTTTAAAGGCTTCC Cphy_3495 4311719 - 4313572 + | hypothetical protein TERM 4790 4313587 - 4313627 + T 84 -5.6 -5.33405 | gap 1, opp_overlap 4313590, overlap 4313590 AAAGGGTTCTATAAT AAAGGTTGGG-GTGTGT ATCATTTA ACACATTCCCAACCTTC TTTTTATTTAATAAA TERM 4791 4313590 - 4313624 + T 86 -7.3 -4.74052 | gap 1, opp_overlap 4313590, overlap 4313587 GGGTTCTATAATAAA GGTTGGG-GTGTGT ATCATTTA ACACATTCCCAACC TTCTTTTTATTTAAT TERM 4792 4314699 - 4314686 - T 79 -6.7 -4.69464 | opp_overlap 4314686 4314685, overlap 4314678 AAAACAGCTGAAAAA TCAGG AATA CCTGA ATTTGAGAACTGTGC TERM 4793 4315013 - 4314969 - T 93 -11.5 -3.63589 | overlap 4314973 4314977 TAAAATAGCTCTAAA TGAAGTAATGGAGCGGGATTC CGT GAATCCCACCCCAAGACTTGA CAAAGAGCCAATAAA TERM 4794 4315009 - 4314973 - T 91 -12.3 -3.52472 | overlap 4314969 4314977 ATAGCTCTAAATGAA GTAATGGAGCGGGATTC CGT GAATCCCACCCCAAGAC TTGACAAAGAGCCAA TERM 4795 4315005 - 4314977 - T 100 -16.1 -3.5013 | overlap 4314973 4314969 CTCTAAATGAAGTAA TGGAGCGGGATTC CGT GAATCCCACCCCA AGACTTGACAAAGAG TERM 4796 4315028 - 4315075 + T 100 -10.9 -5.02439 | opp_overlap 4315030 4315034, overlap 4315029 4315030 4315034 ACAAAGAGCCAATAA AAGAAATGGGTATAAAGATAG TCTCTC TTATCTTTATACCCATTTCAC TTTTTATAATTCTCT TERM 4797 4315029 - 4315074 + T 100 -14.4 -3.59837 | opp_overlap 4315030 4315034, overlap 4315028 4315030 4315034 CAAAGAGCCAATAAA AGAAATGGGTATAAAGATAG TCTCTC TTATCTTTATACCCATTTCA CTTTTTATAATTCTC TERM 4798 4315073 - 4315030 - T 100 -17.2 -4.7268 | opp_overlap 4315029 4315028 4315030 4315034, overlap 4315034 AAAGAGCCAATAAAA GAAATGGGTATAAAGATA GTCTCTCT TATCTTTATACCCATTTC ACTTTTTATAATTCT TERM 4799 4315030 - 4315073 + T 100 -17.9 -2.74817 | opp_overlap 4315030 4315034, overlap 4315029 4315028 4315034 AAAGAGCCAATAAAA GAAATGGGTATAAAGATAG TCTCTC TTATCTTTATACCCATTTC ACTTTTTATAATTCT TERM 4800 4315034 - 4315069 + T 100 -12.9 -4.03085 | opp_overlap 4315030 4315034, overlap 4315030 4315029 4315028 AGCCAATAAAAGAAA TGGGTATAAAGATAG TCTCTC TTATCTTTATACCCA TTTCACTTTTTATAA TERM 4801 4315069 - 4315034 - T 100 -12.2 -4.88795 | opp_overlap 4315034 4315030 4315029 4315028, overlap 4315030 AGCCAATAAAAGAAA TGGGTATAAAGATA GTCTCTCT TATCTTTATACCCA TTTCACTTTTTATAA Cphy_3498 4316557 - 4315244 - | O-antigen polymerase Cphy_3499 4317915 - 4316560 - | polysaccharide biosynthesis protein TERM 4802 4316600 - 4316610 + g 70 -2.6 -5.10461 | opp_overlap 4316599 4316600, overlap 4316599 GTATAGACTAAATAT TTTT TAA AAAA TTTTTGTTGAATAAA TERM 4803 4317503 - 4317477 - G 73 -9 -3.35176 | opp_overlap 4317476, overlap 4317468 4317483 GAAGAATTATACCAA TAAAAACTATTA ATA TAACAGTTTTTA ATACATTACTAGGTA TERM 4804 4317497 - 4317483 - G 74 -3.6 -5.16841 | opp_overlap 4317476, overlap 4317468 4317477 TTATACCAATAAAAA CTATTA ATA TAACAG TTTTTAATACATTAC Cphy_3500 4319033 - 4318014 - | hemolytic protein HlpA-like protein Cphy_3501 4320365 - 4319109 - | glycosyl transferase group 1 TERM 4805 4319653 - 4319665 + g 79 -4.9 -5.14645 | TCATTCAATCCCCCG CTATA TAG TATAG TTTTTATTCCGTTGT Cphy_3502 4321492 - 4320368 - | UDP-N-acetylglucosamine 2-epimerase Cphy_3503 4322606 - 4321497 - | NAD-dependent epimerase/dehydratase Cphy_3504 4323628 - 4322606 - | polysaccharide biosynthesis protein CapD TERM 4806 4322697 - 4322719 + g 70 -2.8 -5.1485 | GTAAGTAGCTGCGTA TTATTAGAAT TAA ATTCAGATAA TTTTTCTCTTCCTTG Cphy_3505 4324862 - 4323651 - | glycosyl transferase group 1 TERM 4807 4324267 - 4324280 + g 78 -3.9 -5.2894 | TAATAATCTTCCGCA TATTG CGGC CAATA TTTTATTTTATCTTT Cphy_3506 4325740 - 4324883 - | NAD-dependent epimerase/dehydratase TERM 4808 4325485 - 4325499 + g 91 -6.4 -5.30348 | overlap 4325497 TCACGCCTTGATCTT TTGCCT TTT GGGCAA TTTTTATTGTTAAAT Cphy_3507 4326372 - 4325737 - | sugar transferase Cphy_3508 4328393 - 4327062 - | integrase family protein TERM 4809 4328472 - 4328462 - H 71 -5.4 -4.55798 | opp_overlap 4328462 TAGTTCAAATCAAAA GATG CAT CATC TAATCTTTCGTAGGC Cphy_3509 4328740 - 4331193 + | Ig domain-containing protein TERM 4810 4331231 - 4331209 - T 100 -15 -6.09196 | opp_overlap 4331209 TTTAAAAGAAAAAAA GATGGTGAGA TTA TCTCACCATC TTTTTTATTTTACTC TERM 4811 4331209 - 4331231 + T 100 -15 -5.83211 | opp_overlap 4331209 TTTAAAAGAAAAAAA GATGGTGAGA TTA TCTCACCATC TTTTTTATTTTACTC Cphy_3510 4333696 - 4331261 - | Ig domain-containing protein TERM 4812 4332686 - 4332662 - G 72 -7.9 -3.79519 | AAGGTTATCACTAAA TGTAACTACTG TAC CAGCTGTTACA TCAAGACCAAACTCA TERM 4813 4334376 - 4334405 + r 100 -11.5 -5.1361 | opp_overlap 4334376 ATCCTACTCAAAAAA GGACCTTGCTGGT TTCC ATCAGCAAAGTCC TTTTTTACAATTTGT TERM 4814 4334405 - 4334376 - R 100 -11.5 -5.09225 | opp_overlap 4334376 ATCCTACTCAAAAAA GGACCTTGCTGGT TTCC ATCAGCAAAGTCC TTTTTTACAATTTGT Cphy_3511 4336042 - 4334543 - | threonine synthase Cphy_3512 4337550 - 4336348 - | cell wall hydrolase SleB TERM 4815 4336732 - 4336748 + g 82 -6.7 -5.02606 | opp_overlap 4336723 ATCAAGTTCATCTTG TGATAAA GAC TTTATCA TTTTCTTGTTTAATG Cphy_3513 4338234 - 4339049 + | hypothetical protein TERM 4816 4339242 - 4339269 + T 100 -16.4 -5.47218 | opp_overlap 4339247, overlap 4339247 GCCATATGGCGCATT GGAAACGCACGC TACC GCGTGCGTTTTC TTTTTTTCACTGGAG TERM 4817 4339264 - 4339247 - T 100 -12.7 -3.60098 | opp_overlap 4339242 4339247 ATGGCGCATTGGAAA CGCACGC TACC GCGTGCG TTTTCTTTTTTTCAC TERM 4818 4339247 - 4339264 + T 100 -12.7 -5.55855 | opp_overlap 4339247, overlap 4339242 ATGGCGCATTGGAAA CGCACGC TACC GCGTGCG TTTTCTTTTTTTCAC Cphy_3514 4340167 - 4339253 - | hypothetical protein Cphy_3515 4341123 - 4340182 - | ABC transporter related TERM 4819 4340310 - 4340329 + g 73 -8.6 -3.37499 | opp_overlap 4340310 4340309, overlap 4340292 4340310 CTTCTCCATAAAAGT GGAAGGAG ATGC TTCCTTCC TTACTTGCAATATTC Cphy_3516 4343979 - 4341214 - | hypothetical protein TERM 4820 4343955 - 4343910 - G 100 -15.9 -4.06361 | opp_overlap 4343923 CTATAGACAATGAAA TTATTACAAGCAATATTATAG CTTT CGATAATATTGCTTGCAATAA ACAAGGTACACGTAA TERM 4821 4343980 - 4343990 + r 79 -6.8 -4.67942 | ACGTAAATGTTTCAT GGAG CTC CTCC TTTTCCTTTATTGAC Cphy_3517 4345221 - 4343998 - | integral membrane sensor signal transduction histidine kinase Cphy_3518 4345986 - 4345282 - | two component transcriptional regulator TERM 4822 4346477 - 4346429 - R 100 -6.8 -5.67063 | gap 1, opp_overlap 4346439 TGTATTACAAAAAAA TAAGACTGTCTCCATGTTCTGCA TATC TGCCGAAC-CGGATTCAGTCTCA TAATCATGACAAGTC Cphy_3519 4348640 - 4346979 - | phosphoribulokinase/uridine kinase TERM 4823 4347449 - 4347476 + g 70 -5.6 -4.4281 | GGCCATGGATTCCTT CTATGACAAGAA TATC TTCTGGTCCTAG TTTCTTATAGTTTCC TERM 4824 4348427 - 4348412 - G 70 -3.2 -4.94902 | GAATCATCACAAAAA TAAGCC CTCT GGCATA AGTCTTACGGCCAGC Cphy_3520 4349561 - 4348806 - | hypothetical protein TERM 4825 4349099 - 4349074 - G 70 -8.2 -3.39895 | overlap 4349077 TCTTGGAGCAATGAA GTACAGCCCC GTGATT GGGGCTGCGC ATAAAGTACTGTATA TERM 4826 4349096 - 4349077 - G 77 -10.7 -2.85896 | overlap 4349074 TGGAGCAATGAAGTA CAGCCCC GTGATT GGGGCTG CGCATAAAGTACTGT Cphy_3521 4350732 - 4349614 - | RpoD family RNA polymerase sigma factor TERM 4827 4350186 - 4350198 + g 78 -6.3 -4.86033 | TAAATTTATATCCTT TTCGA TAA TCGAA TTTTTCTACCGCTTT Cphy_3522 4352584 - 4350794 - | DNA primase TERM 4828 4352482 - 4352497 + g 73 -3.2 -5.09245 | overlap 4352483 ATGGACATAGTCCCA TGTGGT TGGC GCCACG TTTTTGTAATTTTAC Cphy_3523 4353823 - 4352798 - | deoxyguanosinetriphosphate triphosphohydrolase-like protein TERM 4829 4352987 - 4352971 - G 73 -5.9 -4.3953 | opp_overlap 4352971 TCGAATTATAATAAA GATAAAG CTG CTCTATC ATCTTCTCTGCTTTT TERM 4830 4354086 - 4354111 + r 79 -2.7 -5.88476 | TTTCTCATTACAACT TTGCAAAAC TCAAATTT GTTTTGTAA TTTTTTCTTTATTTT TERM 4831 4354180 - 4354233 + r 71 -5.6 -4.59919 | opp_overlap 4354183 4354186 4354194, overlap 4354181 4354182 4354183 AAAGTTTATGATATA TTA-TAATAGGAAAAGGAGGCAGATG CTTT CATCTACC-CCTTTTCCTATCACTAC TTATTTTTCTCATTT TERM 4832 4354181 - 4354232 + r 77 -9.1 -3.33511 | opp_overlap 4354183 4354186 4354194, overlap 4354180 4354182 4354183 AAGTTTATGATATAT TA-TAATAGGAAAAGGAGGCAGATG CTTT CATCTACC-CCTTTTCCTATCACTA CTTATTTTTCTCATT TERM 4833 4354182 - 4354230 + r 78 -9.8 -3.21005 | gap 1, opp_overlap 4354183 4354186 4354194, overlap 4354181 4354180 4354183 AGTTTATGATATATT ATAATAGGAAAAGGAGGCAGATG CTTT CATCTACC-CCTTTTCCTATCAC TACTTATTTTTCTCA TERM 4834 4354183 - 4354229 + r 100 -13.3 -2.51519 | gap 1, opp_overlap 4354183 4354186 4354194, overlap 4354182 4354181 4354180 GTTTATGATATATTA TAATAGGAAAAGGAGGCAGATG CTTT CATCTACC-CCTTTTCCTATCA CTACTTATTTTTCTC TERM 4835 4354229 - 4354183 - R 100 -17.7 -2.71268 | gap 1, opp_overlap 4354183 4354182 4354181 4354180, overlap 4354186 4354194 GTTTATGATATATTA TAATAGGAAAAGGAGGCAGATG CTTT CATCTACC-CCTTTTCCTATCA CTACTTATTTTTCTC TERM 4836 4354226 - 4354186 - R 100 -17.2 -3.50492 | gap 1, opp_overlap 4354183 4354182 4354181 4354180, overlap 4354183 4354194 TATGATATATTATAA TAGGAAAAGGAGGCAGATG CTTT CATCTACC-CCTTTTCCTA TCACTACTTATTTTT TERM 4837 4354218 - 4354194 - R 79 -7.2 -4.47259 | gap 1, opp_overlap 4354183 4354182 4354181 4354180, overlap 4354186 4354183 ATTATAATAGGAAAA GGAGGCAGATG CTTT CATCTACC-CC TTTTCCTATCACTAC Cphy_3524 4356586 - 4354493 - | ferrous iron transport protein B TERM 4838 4354582 - 4354594 + g 84 -7.7 -4.55544 | ATATTGAAAATATGG TCCAC TTC GTGGA TTTTAATTCTCTCTT Cphy_3525 4356844 - 4356623 - | FeoA family protein TERM 4839 4357119 - 4357097 - R 91 -7.7 -5.20216 | CATACCACTAAAAAA GACTGCCGC ATATA GCAACAGTC TCCGAGATATAATAC Cphy_3526 4357539 - 4357165 - | hypothetical protein Cphy_3527 4357802 - 4357590 - | hypothetical protein Cphy_3528 4358503 - 4358111 - | response regulator receiver protein Cphy_3529 4359778 - 4358729 - | histidinol-phosphate aminotransferase Cphy_3530 4361027 - 4359840 - | aspartate aminotransferase TERM 4840 4361265 - 4361301 + r 90 -8.1 -4.76233 | opp_overlap 4361269 TATGCAGAAATACTT GAAAGGTTGAAAGAAAT AAT ATTTCCTCCAACCTTAC TTTATTGTTTTATTA TERM 4841 4361297 - 4361269 - R 95 -11.9 -3.70571 | opp_overlap 4361265 CAGAAATACTTGAAA GGTTGAAAGAAAT AAT ATTTCCTCCAACC TTACTTTATTGTTTT Cphy_3531 4361943 - 4361314 - | hypothetical protein Cphy_3532 4362661 - 4361951 - | ABC transporter related TERM 4842 4362167 - 4362156 - G 83 -7.2 -4.78326 | TCTGAAACAAATAAA GGGG ATAA CCCC ATGGAAGGTTCGTCT Cphy_3533 4363441 - 4362683 - | ABC transporter related Cphy_3534 4364444 - 4363443 - | inner-membrane translocator Cphy_3535 4365329 - 4364454 - | inner-membrane translocator TERM 4843 4365507 - 4365471 - R 100 -14.6 -4.82901 | opp_overlap 4365473 TCGCTGTGAGAAAAA CATTTCCGAAACAGCA TACTT CGCTGATTCGGAAATG TAATACTTCCACTAC TERM 4844 4365473 - 4365505 + r 81 -10.7 -2.86343 | opp_overlap 4365471 GCTGTGAGAAAAACA TTTCCGAAACAGC ATACTTC GCTGATTCGGAAA TGTAATACTTCCACT Cphy_3536 4366744 - 4365578 - | extracellular ligand-binding receptor TERM 4845 4366808 - 4366820 + r 75 -4.9 -5.0538 | AGAAATAGTAGAATG TTTCT TTA AGAAA TTTTTTCACCTAAGA TERM 4846 4366992 - 4366952 - R 79 -6.9 -4.58395 | overlap 4366955 4366967 GTCATGGTTGAAAAA GAAGACGTCGAAAAAGAGA AAA TCCCTCTCTGGACGCCTTT TATGTCACTATAATA TERM 4847 4366989 - 4366955 - R 88 -8.6 -4.40963 | overlap 4366952 4366967 ATGGTTGAAAAAGAA GACGTCGAAAAAGAGA AAA TCCCTCTCTGGACGCC TTTTATGTCACTATA Cphy_3537 4367306 - 4367016 - | hypothetical protein Cphy_3538 4369090 - 4367375 - | peptidase S8 and S53 subtilisin kexin sedolisin Cphy_3539 4370235 - 4369225 - | hypothetical protein TERM 4848 4370178 - 4370203 + g 80 -9 -3.93236 | opp_overlap 4370178 TTACTAAGCACAAAA GCTCAACCGC TATTAT GCGGTTAAGC TTTGTCCCCTTACTA TERM 4849 4370203 - 4370178 - G 95 -11.2 -4.56607 | opp_overlap 4370178 TTACTAAGCACAAAA GCTCAACCGC TATTAT GCGGTTAAGC TTTGTCCCCTTACTA Cphy_3540 4371707 - 4370259 - | ATP-dependent protease ATP-binding subunit TERM 4850 4371907 - 4371947 + r 76 -8.5 -3.54935 | opp_overlap 4371942 4371943, overlap 4371940 4371942 TGGACTCTTAGTAGG CTGGAAGTTTGTGCC-GAG GATTA CGCAGGCACAAACTTC-AG TTTGAAAGAACTTTG TERM 4851 4371940 - 4371980 + r 76 -6.3 -4.7373 | opp_overlap 4371942 4371943, overlap 4371907 4371942 4371947 GATTACGCAGGCACA AACTTCAGTTTGAAAGAAC TTT GTTCTTTCAAACTTAGCTC TTTTTCATAAACTCA TERM 4852 4371977 - 4371942 - R 87 -10 -3.92869 | gap 1, opp_overlap 4371907 4371940 4371942 4371947, overlap 4371943 TTACGCAGGCACAAA CTTCAGTTTGAAAGAAC TTT GTTCTTTCAAACTT-AG CTCTTTTTCATAAAC TERM 4853 4371942 - 4371978 + r 85 -8.9 -3.98658 | opp_overlap 4371942 4371943, overlap 4371907 4371940 4371947 TTACGCAGGCACAAA CTTCAGTTTGAAAGAAC TTT GTTCTTTCAAACTTAGC TCTTTTTCATAAACT TERM 4854 4371977 - 4371943 - R 79 -10.2 -2.954 | opp_overlap 4371907 4371942 4371940 4371947, overlap 4371942 TACGCAGGCACAAAC TTCAGTTTGAAAGAAC TTT GTTCTTTCAAACTTAG CTCTTTTTCATAAAC TERM 4855 4371947 - 4371973 + r 100 -15.4 -3.33434 | opp_overlap 4371942 4371943, overlap 4371942 4371940 CAGGCACAAACTTCA GTTTGAAAGAAC TTT GTTCTTTCAAAC TTAGCTCTTTTTCAT Cphy_3541 4372375 - 4371974 - | Zn-finger containing protein TERM 4856 4372558 - 4372520 - R 100 -12.6 -5.32565 | opp_overlap 4372520 TAATTAATTAAAAAA GGAAGGATGCTGTAACAT TTT ATGCTACAATATCCTCCC TTTACACTCGAGTAC TERM 4857 4372520 - 4372558 + r 75 -8.2 -3.60627 | opp_overlap 4372520 TAATTAATTAAAAAA GGAAGGATGCTGTAACAT TTT ATGCTACAATATCCTCCC TTTACACTCGAGTAC Cphy_3542 4374060 - 4372639 - | undecaprenyl-phosphate glucose phosphotransferase TERM 4858 4374460 - 4374449 - H 72 -5.8 -4.45261 | opp_overlap 4374449 4374448 4374458 CAAAGAAATCCAAAA CAGC AGCT GCTG ATTCATCAGATTTCA Cphy_3543 4374543 - 4376276 + | 2-alkenal reductase Cphy_3544 4377697 - 4376510 - | CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase TERM 4859 4377603 - 4377574 - G 73 -9.4 -2.77999 | overlap 4377571 4377569 CATTCATCAATACGA TTCGATTCTTCC TTATCG GGAAGATTCGAA ACAGATAAAAGAATA TERM 4860 4377609 - 4377647 + g 75 -9.9 -2.92668 | gap 1, opp_overlap 4377609 4377614, overlap 4377613 4377614 AAGATTCGAAACAGA TAAAAGAATACGGTAATG AAAC CAT-ACCGTATTCCTTTA TATAATTCAATAATA TERM 4861 4377647 - 4377609 - G 87 -12.1 -3.27146 | gap 1, opp_overlap 4377609 4377613 4377614, overlap 4377614 AAGATTCGAAACAGA TAAAAGAATACGGTAATG AAAC CAT-ACCGTATTCCTTTA TATAATTCAATAATA TERM 4862 4377614 - 4377642 + g 76 -9.8 -3.076 | gap 1, opp_overlap 4377609 4377614, overlap 4377613 4377609 TCGAAACAGATAAAA GAATACGGTAATG AAAC CAT-ACCGTATTC CTTTATATAATTCAA TERM 4863 4377642 - 4377614 - G 100 -9.8 -4.74013 | gap 1, opp_overlap 4377614 4377613 4377609, overlap 4377609 TCGAAACAGATAAAA GAATACGGTAATG AAAC CAT-ACCGTATTC CTTTATATAATTCAA Cphy_3545 4378869 - 4377694 - | glycosyltransferase TERM 4864 4378236 - 4378248 + g 75 -9.1 -3.5032 | opp_overlap 4378223, overlap 4378223 4378234 AATCTCGCTCTTTTA GCGGA TAT TCCGC TCTTTCATATGGAAA TERM 4865 4378554 - 4378544 - G 78 -5.4 -5.00616 | GCTGCTGTTAAAAAA GTAC CTT GTAC TCCTGGTAGATTGCA Cphy_3546 4379639 - 4378896 - | ABC transporter related Cphy_3547 4380642 - 4379866 - | ABC-2 type transporter Cphy_3548 4382578 - 4380908 - | 2-isopropylmalate synthase TERM 4866 4381520 - 4381498 - G 84 -11.4 -3.14344 | opp_overlap 4381496 TATCGGCCGGATCAA CTGGCAAATA AGG TACTTGCCAG AATTCCCTGTCTCTA Cphy_3549 4383056 - 4382754 - | phosphotransferase system, phosphocarrier protein HPr TERM 4867 4383134 - 4383089 - R 74 -6.9 -4.27117 | opp_overlap 4383101, overlap 4383090 4383092 CCTCTACAATAGAAA TTACCTAGGGAATGTATCAGA CAAG TCTGCTGCATTCCCTAGCCAC TATGCCCACTTTTGC TERM 4868 4383133 - 4383090 - R 83 -10.4 -3.15788 | opp_overlap 4383101, overlap 4383089 4383092 CTCTACAATAGAAAT TACCTAGGGAATGTATCAGA CAAG TCTGCTGCATTCCCTAGCCA CTATGCCCACTTTTG TERM 4869 4383131 - 4383092 - R 84 -10.8 -3.13369 | opp_overlap 4383101, overlap 4383090 4383089 CTACAATAGAAATTA CCTAGGGAATGTATCAGA CAAG TCTGCTGCATTCCCTAGC CACTATGCCCACTTT Cphy_3550 4384411 - 4383170 - | hypothetical protein TERM 4870 4383269 - 4383255 - G 71 -8.6 -3.18274 | opp_overlap 4383253 4383252 4383255 TGTACCGTAACCGAA TGGACT CCC AGTCCA TAATTTGTTACATCT TERM 4871 4383255 - 4383269 + g 71 -8.6 -3.12104 | opp_overlap 4383255, overlap 4383253 4383252 TGTACCGTAACCGAA TGGACT CCC AGTCCA TAATTTGTTACATCT Cphy_3551 4385273 - 4384392 - | hypothetical protein TERM 4872 4384897 - 4384913 + g 77 -3 -5.58522 | opp_overlap 4384892, overlap 4384898 TCATTTAAAGTTTCA TCAGAA AATCG TTCTGG TTTTTCTTTTGTATC Cphy_3552 4386362 - 4385301 - | hypothetical protein Cphy_3553 4386790 - 4386359 - | hypothetical protein TERM 4873 4386905 - 4386948 + r 76 -6.2 -4.69464 | gap 1, opp_overlap 4386910, overlap 4386910 TTGCGAAGATATGTA TCAAAGTAACTGTCCC-CTCA GAA TGAAAGGAACAGTTACTTTTA TTTTTCACCTATTTT TERM 4874 4386943 - 4386910 - R 89 -10.5 -3.79138 | gap 1, opp_overlap 4386905 4386910 AAGATATGTATCAAA GTAACTG-TCCCCTCA GAA TGAAAGGAACAGTTAC TTTTATTTTTCACCT TERM 4875 4386910 - 4386943 + r 84 -6.1 -5.27023 | gap 1, opp_overlap 4386910, overlap 4386905 AAGATATGTATCAAA GTAACTGTCCC-CTCA GAA TGAAAGGAACAGTTAC TTTTATTTTTCACCT Cphy_3554 4387310 - 4387098 - | hypothetical protein TERM 4876 4387211 - 4387223 + g 76 -7.7 -4.14056 | AGTCTCCCTCCTTGA CTTCC ATT GGAAG TTTATACTTTGGGAT Cphy_3555 4388246 - 4387344 - | beta-lactamase domain-containing protein TERM 4877 4387755 - 4387743 - G 71 -4.9 -4.56775 | ACTCGGTGCTAAAAA TGTTA CAG TAACA GCGCCAAAATTAAAT TERM 4878 4389140 - 4389104 - R 88 -6.8 -5.26316 | opp_overlap 4389104 4389127 TTAGTTTAGAAAAAA CACCATTACCTATA TTTTAATTC TATAAGCAATGGTG CTTCTATCATTTTAC Cphy_3556 4390671 - 4389160 - | lysyl-tRNA synthetase TERM 4879 4390743 - 4390706 - R 87 -9.9 -3.91144 | opp_overlap 4390704 4390706 CTCATATTGCAGAAA GCGACCATTTAAAATGC TGTT GCACCTTTTATGGTCGC TCTTTCCTCTGCGCA Cphy_3557 4391259 - 4390777 - | transcription elongation factor GreA TERM 4880 4391366 - 4391334 - H 80 -5.8 -5.03945 | opp_overlap 4391334 TAATAAGCATAAAAA CGATATAATACC AATATTCAA AGTATTATATCG TATTCAAAACCTCTT TERM 4881 4392893 - 4392881 - g 74 -4.8 -4.84311 | opp_overlap 4392881 4392890, overlap 4392884 CTTGATAGAACAAAA GAGC CAGGT GCTC TTGGTGAGCCTTTAT Cphy_3558 4391888 - 4395415 + | pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing protein TERM 4882 4395520 - 4395471 - T 100 -16.5 -5.06414 | opp_overlap 4395474 4395519, overlap 4395474 TTGTTGTAATAAAAA GAAGGGGCTGTGCACTAGTGGTT GAAA AACCGCTGGTGCACAGCTCCTTT CTAATAAAATCTGAT TERM 4883 4395517 - 4395474 - T 100 -18.2 -4.63592 | opp_overlap 4395474, overlap 4395471 TTGTAATAAAAAGAA GGGGCTGTGCACTAGTGGTT GAAA AACCGCTGGTGCACAGCTCC TTTCTAATAAAATCT TERM 4884 4395474 - 4395517 + T 100 -24.8 -3.97388 | opp_overlap 4395474 4395471 TTGTAATAAAAAGAA GGGGCTGTGCACTAGTGGTT GAAA AACCGCTGGTGCACAGCTCC TTTCTAATAAAATCT Cphy_3559 4396056 - 4395667 - | hypothetical protein Cphy_3560 4396374 - 4396078 - | hypothetical protein Cphy_3561 4397203 - 4396367 - | hypothetical protein Cphy_3562 4397533 - 4397204 - | PadR-like family transcriptional regulator TERM 4885 4397733 - 4397706 - R 100 -12.1 -4.03179 | opp_overlap 4397704 4397702 4397706 TATATTACAACGAAA CACCCTATGGT TTGTTT ACCACAGGGTG TCTATTTATAACAAG TERM 4886 4397706 - 4397733 + r 82 -9.9 -3.3353 | opp_overlap 4397706, overlap 4397704 4397702 TATATTACAACGAAA CACCCTATGGT TTGTTT ACCACAGGGTG TCTATTTATAACAAG Cphy_3563 4399868 - 4397796 - | hypothetical protein TERM 4887 4399941 - 4399929 - R 80 -6.2 -4.88228 | ATTCAATAGGAAAAA GCCC CTGAT GGGC ATAAAAAGTCCACCC Cphy_3564 4400819 - 4399965 - | RpiR family transcriptional regulator Cphy_3565 4401524 - 4400832 - | N-acylglucosamine-6-phosphate 2-epimerase Cphy_3566 4403048 - 4401543 - | hypothetical protein TERM 4888 4402863 - 4402874 + g 74 -4.4 -4.99134 | CAAAACCGCAATATC TGCA TCTT TGCA TTTTTCCTTTAACAT TERM 4889 4403095 - 4403135 + r 79 -4.8 -5.30686 | gap 1, opp_overlap 4403095 TAAGCTTGTGTCAAA GATACGCAGGTAC-AAG CTGTGTCT CTTAGTCCCTGCGCATC TTTTTTGTACCTATT TERM 4890 4403248 - 4403286 + r 82 -7.5 -4.62069 | AAGTGTAAAGTTTTA GAATTTCTTAGGTGGCG TCTTT TGGCGCCTTAGAAATTC TTTTTACACTAAAAA TERM 4891 4403323 - 4403366 + r 100 -19.4 -2.63631 | opp_overlap 4403335, overlap 4403326 4403335 TTGTTCAGTAGGCCG GAAGAATAAAAATGAAATTC CAAT GGATTTCATTTTTATTCTTC TAGTGTGAAACTTAG TERM 4892 4403326 - 4403363 + r 100 -15.3 -3.4678 | opp_overlap 4403335, overlap 4403323 4403335 TTCAGTAGGCCGGAA GAATAAAAATGAAATTC CAAT GGATTTCATTTTTATTC TTCTAGTGTGAAACT TERM 4893 4403335 - 4403354 + r 86 -5.8 -5.34365 | opp_overlap 4403335, overlap 4403326 4403323 CCGGAAGAATAAAAA TGAAATTC CAAT GGATTTCA TTTTTATTCTTCTAG TERM 4894 4403354 - 4403335 - R 77 -4.4 -5.29445 | gap 1, opp_overlap 4403326 4403323 4403335 CCGGAAGAATAAAAA TGAAATTCC AAT GGA-TTTCA TTTTTATTCTTCTAG TERM 4895 4403381 - 4403419 + r 100 -14.8 -4.11394 | opp_overlap 4403381 4403385, overlap 4403385 CTAGTGTGAAACTTA GAAATTCTTAGTCAGCGT ATT GTGCTGACTTAGAATTTC TTTTCACACTGACAT TERM 4896 4403419 - 4403381 - R 100 -13.4 -2.64803 | opp_overlap 4403381 4403385, overlap 4403385 CTAGTGTGAAACTTA GAAATTCTTAGTCAGC GTATTGT GCTGACTTAGAATTTC TTTTCACACTGACAT TERM 4897 4403385 - 4403415 + r 93 -9.8 -4.65933 | opp_overlap 4403385 4403381, overlap 4403381 TGTGAAACTTAGAAA TTCTTAGTCAGCGT ATT GTGCTGACTTAGAA TTTCTTTTCACACTG TERM 4898 4403415 - 4403385 - R 79 -8.4 -4.02132 | opp_overlap 4403381 4403385, overlap 4403381 TGTGAAACTTAGAAA TTCTTAGTCAGC GTATTGT GCTGACTTAGAA TTTCTTTTCACACTG Cphy_3567 4404967 - 4403423 - | secreted protein TERM 4899 4404508 - 4404521 + g 78 -6.7 -4.70659 | CAATAGATTTTTCTT CCTTC GTTT GAAGG TTTTTCACTGTAACA Cphy_3568 4406263 - 4405037 - | binding-protein-dependent transport systems inner membrane component Cphy_3569 4407250 - 4406276 - | binding-protein-dependent transport systems inner membrane component Cphy_3570 4409101 - 4407401 - | hypothetical protein TERM 4900 4408426 - 4408436 + g 73 -5.4 -4.65916 | opp_overlap 4408426 AATCTGTTAATGACA TGGA ATA TCCA TTTTCTTCGGATGGA Cphy_3571 4411029 - 4409134 - | glycoside hydrolase family protein Cphy_3572 4412170 - 4411064 - | hypothetical protein TERM 4901 4411714 - 4411726 + g 74 -4.9 -4.79384 | opp_overlap 4411714, overlap 4411708 CATAGAGTGGAAAAT GAATT AAA AATTC TTTTGCTTTTGTTGT TERM 4902 4412204 - 4412234 + H 71 -2 -5.51353 | opp_overlap 4412203, overlap 4412204 4412205 4412207 4412208 GTTCCTCAATGATAT TTATGAAAATTATT TTC ACTAATTTTCGTGG TTTTTCTTGTTTTTG TERM 4903 4412437 - 4412424 - H 75 -9.5 -2.95909 | overlap 4412423 AAATACATACCAAAT GGCGC TAAA GCGCC GGGATGGAGGAACAT Cphy_3573 4412453 - 4413352 + | ROK family protein TERM 4904 4413421 - 4413399 - T 95 -9.2 -5.23016 | opp_overlap 4413401 AAATAATTTAAAAAA GAGGATACCA AAA CAGTATCCTC TTAGCGTAAATCTTA Cphy_3574 4414838 - 4413453 - | radical SAM domain-containing protein Cphy_3575 4415163 - 4414831 - | hypothetical protein Cphy_3576 4416421 - 4415324 - | hypothetical protein Cphy_3577 4417319 - 4416402 - | ABC transporter related TERM 4905 4416956 - 4416980 + g 81 -2.9 -5.72616 | overlap 4416957 TATTAAATTTCTCAA GCCAAAATAAA ACA TTTTTTTTGGA TTTTTTTCTATCGAT TERM 4906 4416957 - 4416979 + g 70 -6.4 -4.01943 | overlap 4416956 ATTAAATTTCTCAAG CCAAAATAAA ACA TTTTTTTTGG ATTTTTTTCTATCGA Cphy_3578 4418718 - 4417348 - | UBA/THIF-type NAD/FAD binding protein TERM 4907 4418134 - 4418147 + g 81 -5.3 -5.10033 | overlap 4418126 ATCTAGTTCTTCTGA TGAAG ATAT CTTCA TTTTCTTTATATTAA Cphy_3579 4419777 - 4418725 - | hypothetical protein TERM 4908 4420517 - 4420497 - H 86 -9.9 -3.70109 | opp_overlap 4420495 4420494 TACATTATCCAATAA TTGTCAATT TAT AATTGACAA AATATGTAATTTTAT Cphy_3580 4420612 - 4422468 + | hypothetical protein TERM 4909 4422570 - 4422603 + T 79 -6.9 -4.5774 | opp_overlap 4422570 4422572, overlap 4422572 AAGTTTGATGTATAA GAG-AGGAGCTCCAT TAAAAT ATGG-GCTCCTCCTC TTTTCATTATTACTA TERM 4910 4422572 - 4422600 + T 75 -9.7 -2.92061 | gap 1, opp_overlap 4422572 4422570, overlap 4422570 GTTTGATGTATAAGA GAGGAGCTCCAT TAAAAT ATGG-GCTCCTC CTCTTTTCATTATTA TERM 4911 4422600 - 4422572 - T 78 -9.7 -3.24924 | gap 1, opp_overlap 4422570 4422572, overlap 4422570 GTTTGATGTATAAGA GAGGAGCTCCAT TAAAAT ATGG-GCTCCTC CTCTTTTCATTATTA Cphy_3581 4423883 - 4422750 - | N-acetylglucosamine-6-phosphate deacetylase Cphy_3582 4424608 - 4423898 - | glucosamine-6-phosphate isomerase TERM 4912 4424649 - 4424629 - R 76 -8.5 -3.47349 | overlap 4424638 4424639 CCTCCAAATCTACAA TTTTGAAAA TTT TTTTCAAAA AATGACAAGAATAAT TERM 4913 4424767 - 4424745 - R 100 -10.7 -5.79588 | opp_overlap 4424745 GTAAAATGAAAAAAA CCTTGAAAG TAATC CTTTCAAGG TTTGATTAAAGCTGG TERM 4914 4424745 - 4424767 + r 89 -10.7 -3.91084 | opp_overlap 4424745 GTAAAATGAAAAAAA CCTTGAAAG TAATC CTTTCAAGG TTTGATTAAAGCTGG Cphy_3583 4426300 - 4425122 - | cation diffusion facilitator family transporter TERM 4915 4426431 - 4426390 - R 89 -10.3 -3.81287 | gap 1, opp_overlap 4426426, overlap 4426422 TATATTATCATCAAA CGGAACGTAGTCAACCCCTT ATT AAAAGGC-AACCACGTTCCG CTGGACTTAAATATC Cphy_3584 4427083 - 4426445 - | NADPH-dependent FMN reductase TERM 4916 4427374 - 4427319 - R 100 -11.7 -4.63184 | gap 1, opp_overlap 4427310, overlap 4427310 AAGTTATTGTAAAAA GGCTCTTACAAATTAATCAAGTATTC TAACG AAATACTT-ATTATTTTGTAAAAGCC CCGAATTAATTATTT Cphy_3585 4428406 - 4427384 - | LacI family transcription regulator Cphy_3586 4430196 - 4428652 - | arabinogalactan endo-1,4-beta-galactosidase Cphy_3587 4432444 - 4430612 - | hypothetical protein TERM 4917 4430972 - 4430988 + g 72 -3.7 -4.96848 | AGGATCTGACATACT TAGGATG GTA CGTTCTA TTTTTATCTCAGAAC TERM 4918 4431571 - 4431553 - G 71 -8.9 -3.17219 | overlap 4431544 4431543 4431556 CATAACTCTTAGCAA GAAGCTC ATACG GAGCTTC CCATCTTCCCATCTT TERM 4919 4432119 - 4432131 + g 71 -4.9 -4.58466 | opp_overlap 4432119 GTAAACATCCAGATA CAAAA GTC TTTTG TTTTATACTTATCAC TERM 4920 4432460 - 4432473 + r 82 -9.5 -3.68351 | TACAACCTCTATTCT GGCGC TTAA GCGCC TTTAGATAATGAAAG TERM 4921 4432595 - 4432624 + r 78 -5.7 -4.87328 | overlap 4432588 4432586 4432597 TAGACGCACTTTCCT AAGGGGAAGGG ATTTTTCC CCCTTCTCCTA TTTTCTATTTATCTA TERM 4922 4432597 - 4432622 + r 79 -8.3 -4.03253 | overlap 4432588 4432586 4432595 GACGCACTTTCCTAA GGGGAAGGG ATTTTTCC CCCTTCTCC TATTTTCTATTTATC Cphy_3588 4433562 - 4432750 - | binding-protein-dependent transport systems inner membrane component Cphy_3589 4434439 - 4433555 - | binding-protein-dependent transport systems inner membrane component TERM 4923 4434461 - 4434513 + r 76 -8.7 -3.46602 | gap 2, opp_overlap 4434442, overlap 4434451 4434464 4434465 4434467 4434469 CACCTCCTCCTATTT CTTATAGGGGGTGATGTAAGAAGCA CCCCT TGCT-CTTACACCACCCTCTA-ATG TTATCCTATAGAACC TERM 4924 4434464 - 4434511 + r 88 -11.5 -3.30651 | gap 1, opp_overlap 4434442, overlap 4434451 4434461 4434465 4434467 4434469 CTCCTCCTATTTCTT ATAGGGGGTGATGTAAGAAGCA CCCCT TGCT-CTTACACCACCCTCTAA TGTTATCCTATAGAA TERM 4925 4434465 - 4434510 + r 100 -15 -2.58069 | gap 1, opp_overlap 4434442, overlap 4434451 4434464 4434461 4434467 4434469 TCCTCCTATTTCTTA TAGGGGGTGATGTAAGAAGCA CCCCT TGCT-CTTACACCACCCTCTA ATGTTATCCTATAGA TERM 4926 4434467 - 4434508 + r 100 -13.2 -2.82586 | gap 1, opp_overlap 4434442, overlap 4434451 4434465 4434464 4434461 4434469 CTCCTATTTCTTATA GGGGGTGATGTAAGAAGCA CCCCT TGCT-CTTACACCACCCTC TAATGTTATCCTATA TERM 4927 4434469 - 4434506 + r 90 -12.2 -2.9544 | gap 1, opp_overlap 4434442, overlap 4434451 4434467 4434465 4434464 4434461 CCTATTTCTTATAGG GGGTGATGTAAGAAGCA CCCCT TGCT-CTTACACCACCC TCTAATGTTATCCTA Cphy_3590 4435923 - 4434607 - | extracellular solute-binding protein TERM 4928 4436297 - 4436267 - R 100 -10.6 -5.64873 | opp_overlap 4436267 GCTAAGAATAAAAAA CTTCCTTGATAGAA GTC TGCTATCAAGAAAG TTTCTCTTAATTATC TERM 4929 4436267 - 4436297 + r 83 -8.4 -4.29327 | opp_overlap 4436267 GCTAAGAATAAAAAA CTTCCTTGATAGAA GTC TGCTATCAAGAAAG TTTCTCTTAATTATC Cphy_3591 4438502 - 4436346 - | methyl-accepting chemotaxis sensory transducer Cphy_3592 4438735 - 4439025 + | hypothetical protein TERM 4930 4439113 - 4439063 - T 93 -11.5 -3.65812 | opp_overlap 4439068, overlap 4439068 TCTCTCGCAACATAA GAAAAGGACTATAACGGTGAA TTCAATATC TTTACCGTTATAGTCCTTTTT TGTTTCTTTTTATTT TERM 4931 4439108 - 4439068 - T 100 -11.4 -4.90381 | opp_overlap 4439068, overlap 4439063 CGCAACATAAGAAAA GGACTATAACGGTGAA TTCAATATC TTTACCGTTATAGTCC TTTTTTGTTTCTTTT TERM 4932 4439068 - 4439108 + T 100 -13.6 -5.88476 | opp_overlap 4439068 4439063 CGCAACATAAGAAAA GGACTATAACGGTGAA TTCAATATC TTTACCGTTATAGTCC TTTTTTGTTTCTTTT Cphy_3593 4440307 - 4439138 - | hypothetical protein Cphy_3594 4440818 - 4440309 - | ECF subfamily RNA polymerase sigma-24 factor TERM 4933 4440913 - 4440881 - R 100 -13.7 -3.47078 | opp_overlap 4440888 4440891, overlap 4440882 4440891 4440903 TATTCTATAGTATAA CTTATAAGAAGCTGC GAA GCAACTTCTTATAAA AGATGCAGCTTTTGC TERM 4934 4440912 - 4440882 - R 100 -15 -2.67925 | opp_overlap 4440888 4440891, overlap 4440881 4440891 4440903 ATTCTATAGTATAAC TTATAAGAAGCTGC GAA GCAACTTCTTATAA AAGATGCAGCTTTTG TERM 4935 4440931 - 4440915 - R 78 -6.6 -4.386 | opp_overlap 4440924 CAACTTCTTATAAAA GATGCA GCTTT TGCATC GTAAATCTGATTATT TERM 4936 4441009 - 4440977 - R 100 -17.3 -3.83318 | opp_overlap 4440984 4440987, overlap 4440987 GTTTCAATAATATAA CTTATAAGAAGCTGC GAA GCAACTTCTTATAAG AGATGCAGCTTTTGC Cphy_3595 4441982 - 4441038 - | hypothetical protein TERM 4937 4441506 - 4441520 + g 74 -4.2 -4.91109 | opp_overlap 4441508, overlap 4441508 ATTTATCTTAAAATC CATGGA TTT TCCAAG TTTTTCTACTACCGG TERM 4938 4442214 - 4442159 - R 89 -7.9 -5.09245 | gap 1, opp_overlap 4442159 CTAAAAGTAGAAAAA GAGCTCCAAC-CTGTAAATTGATCTT GTAGT AAAATCAATTCCGAAAGTTGGAGCTC GTTTTCTATTTCATT Cphy_3596 4443822 - 4442233 - | peptide chain release factor 3 TERM 4939 4443521 - 4443495 - G 72 -8 -3.78793 | overlap 4443498 TAGAAGCATCAATAA CCATGACAGCAG AGT CTGCTGCCATTA AAGTTCTATAAGTAT TERM 4940 4443518 - 4443498 - G 85 -11.9 -2.97365 | overlap 4443495 AAGCATCAATAACCA TGACAGCAG AGT CTGCTGCCA TTAAAGTTCTATAAG TERM 4941 4443653 - 4443677 + g 73 -5.7 -4.68103 | TTCTCGATTTCCATC CAGTCAGACAC CGC GTGTTTTGCTG TTTTCTTACCCTTAA Cphy_3597 4444788 - 4444093 - | ABC-2 type transporter Cphy_3598 4445633 - 4444788 - | ABC transporter related TERM 4942 4445044 - 4445032 - G 78 -7.7 -4.20516 | CCCTCATTTAATAAA GCAAC ATG GTTGC AGAGTTTCGTTGCCT Cphy_3599 4446899 - 4445778 - | response regulator receiver protein TERM 4943 4447263 - 4447229 - R 100 -5.9 -5.9873 | TTAGGACAAAAAAAA GCACCATAAGTATCA CTTTC TAATACTTACAATGC TTCCCATTCCTATTT Cphy_3600 4448491 - 4447277 - | aspartate kinase TERM 4944 4447640 - 4447621 - G 70 -6.6 -4.14739 | opp_overlap 4447621 4447624, overlap 4447624 CCACTGATTGTAAAA TAATATCA ACAT TGATATTA TGATTTGCCAAATGT TERM 4945 4447900 - 4447879 - G 71 -8.8 -3.24188 | opp_overlap 4447883, overlap 4447872 4447869 4447891 GTACACCAGCACCAA GAGATGCT AAATCA AGCATCTC GTCATAAGTAATTTC Cphy_3603 4451374 - 4450172 - | homoserine dehydrogenase TERM 4946 4451523 - 4451495 - R 75 -9.7 -2.90496 | overlap 4451492 TTGTTTTTCAAATTA CTCTCTACCTAAA ATT TTTAGGTAGTGAA TCCCATCAAGCGCTT Cphy_3604 4451932 - 4451492 - | hypothetical protein Cphy_3605 4452296 - 4452652 + | hypothetical protein TERM 4947 4452686 - 4452734 + T 95 -9.1 -5.14949 | opp_overlap 4452688, overlap 4452688 TTCTATTAATATAAA AAGCGTTACTTCATAACTCTTTT TCA ATAAGAATTATGAAATAACGCTC TTTTCTTATTTTATT TERM 4948 4452732 - 4452688 - T 100 -16.1 -5.1244 | opp_overlap 4452686 4452688 CTATTAATATAAAAA GCGTTACTTCATAACTCTTTT TCA ATAAGAATTATGAAATAACGC TCTTTTCTTATTTTA TERM 4949 4452688 - 4452732 + T 100 -11.7 -4.15118 | opp_overlap 4452688, overlap 4452686 CTATTAATATAAAAA GCGTTACTTCATAACTCTTTT TCA ATAAGAATTATGAAATAACGC TCTTTTCTTATTTTA Cphy_3606 4453996 - 4452740 - | carboxyl-terminal protease TERM 4950 4454011 - 4454027 + r 75 -8 -3.60967 | TTCTACCTCCAATCC TGCGCA TACTT TGCGCA TATTATTATTGTGCT TERM 4951 4454139 - 4454104 - R 95 -12.8 -2.57132 | opp_overlap 4454107 4454108, overlap 4454108 GTCTCTGCGCATAAT GAAATTTTGTGCCATA AATT TAAGGCACAAAACTTC TGATGGAAAGCTATA TERM 4952 4454108 - 4454135 + r 77 -10 -2.64099 | opp_overlap 4454108 4454104, overlap 4454107 CTGCGCATAATGAAA TTTTGTGCCATA AATT TAAGGCACAAAA CTTCTGATGGAAAGC TERM 4953 4454135 - 4454108 - R 90 -10 -3.9941 | opp_overlap 4454107 4454108, overlap 4454104 CTGCGCATAATGAAA TTTTGTGCCATA AATT TAAGGCACAAAA CTTCTGATGGAAAGC Cphy_3607 4455653 - 4454244 - | peptidase M23B TERM 4954 4454798 - 4454808 + g 90 -4 -5.9003 | GTTCTTCTTCTTTTA TATC ATC GATA TTTTTTTCTTGATTT TERM 4955 4455698 - 4455719 + r 72 -8.8 -3.03459 | opp_overlap 4455696, overlap 4455695 GCGCATTAGTAGATT TGTGCCAA GATTTG TTGGCACA TAGTTTATAAGTGTA Cphy_3608 4456713 - 4455802 - | hypothetical protein TERM 4956 4455941 - 4455922 - G 78 -6.4 -4.58395 | TCCAGTTGCTAAAAA GTCTGCTT TTTT AAGCGGAC TACTAAAACTAGTCA Cphy_3609 4457440 - 4456700 - | cell division ATP-binding protein FtsE Cphy_3610 4458633 - 4457545 - | transcriptional regulator, CdaR TERM 4957 4459031 - 4459041 + r 70 -4 -5.10154 | TTTGTCACAAATATG GTAA GAA TTAC TTTTTCCTTTTCCAT TERM 4958 4459152 - 4459126 - R 100 -11.7 -5.18355 | gap 1, overlap 4459128 CCTAAAAATTAAAAA TA-GAGCCGTCC TATC GGACGGCTCATA ACATACATAATTAGT TERM 4959 4459149 - 4459128 - R 100 -15.9 -4.20007 | overlap 4459126 TAAAAATTAAAAATA GAGCCGTCC TATC GGACGGCTC ATAACATACATAATT Cphy_3611 4460275 - 4459163 - | ABC transporter related TERM 4960 4459683 - 4459657 - G 73 -8.8 -3.30441 | opp_overlap 4459675, overlap 4459675 CACCATCTTTCATAA CTACGATTCTTG TAC CAAGAGTCATAG CCTCTGTCTGGTCAT Cphy_3612 4461390 - 4460518 - | hypothetical protein Cphy_3613 4461847 - 4461416 - | hypothetical protein Cphy_3614 4462240 - 4462968 + | short-chain dehydrogenase/reductase SDR TERM 4961 4463071 - 4463038 - T 71 -3.1 -5.25699 | gap 1, opp_overlap 4463033 4463038 ATCACATAATAAAAA GGCTGC-GTATTCGGT TAT ATCTGATACAGCAGCC TTTTAGTATATGTTT TERM 4962 4463038 - 4463071 + T 82 -7.5 -4.43864 | gap 1, opp_overlap 4463038, overlap 4463033 ATCACATAATAAAAA GGCTGC-GTATTCGGT TAT ATCTGATACAGCAGCC TTTTAGTATATGTTT Cphy_3615 4464726 - 4463242 - | hypothetical protein TERM 4963 4464853 - 4464800 - R 81 -10 -3.06831 | opp_overlap 4464789 4464801, overlap 4464789 4464805 TCAATTTTTATGTAA TTATAGGATACTTACATAAACAAT AAGTTA ATTCTTTATGTAAGCATCCCATAT TAATATAAAATATCT TERM 4964 4464801 - 4464852 + r 77 -9.1 -3.27498 | opp_overlap 4464789 4464800 4464805, overlap 4464789 CAATTTTTATGTAAT TATAGGATACTTACATAAACAAT AAGTTA ATTCTTTATGTAAGCATCCCATA TTAATATAAAATATC TERM 4965 4464848 - 4464805 - R 88 -12.1 -2.92192 | opp_overlap 4464789 4464801, overlap 4464789 4464800 TTTTATGTAATTATA GGATACTTACATAAACAAT AAGTTA ATTCTTTATGTAAGCATCC CATATTAATATAAAA Cphy_3616 4466925 - 4464868 - | hypothetical protein Cphy_3617 4468265 - 4467462 - | aminoglycoside N3'-acetyltransferase-like protein Cphy_3618 4469928 - 4468402 - | glycoside hydrolase family protein TERM 4966 4470109 - 4470093 - H 93 -11.5 -3.73525 | ATAAATAGAAAGGAA CCGCCGC TTG ACGGCGG AATGGAGAATGATAT Cphy_3619 4470123 - 4470851 + | short-chain dehydrogenase/reductase SDR TERM 4967 4470952 - 4471006 + T 100 -18.4 -3.26066 | opp_overlap 4470961, overlap 4470961 AGATTCATTTTAAAT TTAAAGAAAGTTTTACATCATAGCTT ATT ATGCTATGATGTAAAACTTTTTTTTA TCTCTATTATTTATT TERM 4968 4470961 - 4470997 + T 100 -16.9 -6.06529 | opp_overlap 4470961, overlap 4470952 TTAAATTTAAAGAAA GTTTTACATCATAGCTT ATT ATGCTATGATGTAAAAC TTTTTTTTATCTCTA TERM 4969 4470997 - 4470961 - T 100 -16.9 -4.53439 | opp_overlap 4470961 4470952 TTAAATTTAAAGAAA GTTTTACATCATAGCTT ATT ATGCTATGATGTAAAAC TTTTTTTTATCTCTA Cphy_3620 4472369 - 4471131 - | sodium/hydrogen exchanger TERM 4970 4471237 - 4471223 - G 72 -7.8 -3.7282 | overlap 4471204 4471224 TTATCTCATTAATAA CTGCCG CGG CGGCAA TCGTACCTTGTATAA TERM 4971 4471891 - 4471835 - G 74 -9.8 -2.70946 | overlap 4471834 TTTTCTCAGAAATAT TTGATGCTATAATTGATATTGTTGTA AAAAA TACAACCACACCAACCATATCATCAA GAGCTGCCATTGGTA Cphy_3621 4472977 - 4472366 - | TetR family transcriptional regulator TERM 4972 4472585 - 4472611 + g 85 -3.9 -5.73672 | overlap 4472589 TAGCGCCAAACGGTA GATTTTGAT ATTCAATTC ATCAAAATC TTTTTTTAATTCTTT TERM 4973 4473095 - 4473153 + r 88 -7.3 -5.05712 | gap 2, opp_overlap 4473096, overlap 4473093 4473096 GTTTGCCTACAGTTA -ATTATTGACCATCTAGTCTGTAATT-AT TTT ATCAGTTATGGACTAGATAGTCAATAATA TTTTTACTTGTTTAT TERM 4974 4473096 - 4473151 + r 100 -12.4 -4.12448 | gap 1, opp_overlap 4473096, overlap 4473093 4473095 TTTGCCTACAGTTAA TTATTGACCATCTAGTCTGTAATT-AT TTT ATCAGTTATGGACTAGATAGTCAATAA TATTTTTACTTGTTT TERM 4975 4473151 - 4473096 - R 70 -8 -3.12351 | gap 1, opp_overlap 4473093 4473096 4473095 TTTGCCTACAGTTAA TTATTGACCATCTAGTCTGTAATT-AT TTT ATCAGTTATGGACTAGATAGTCAATAA TATTTTTACTTGTTT TERM 4976 4473227 - 4473204 - R 75 -2.4 -5.64873 | TTTAATAATAAAAAA TCCCACAG AATATAGA CTGCAGGA TTGTAATGTAACCTA TERM 4977 4473284 - 4473270 - R 82 -8.6 -4.08485 | GTCATTTAAACCAAA TCCCAT ACT ATGGGA AAACCATAAAATAAT TERM 4978 4473446 - 4473423 - R 100 -16.8 -4.36914 | GCCTGTCGCACAAAA TGCCAGCCAC ACAA GTGGCTGGCA TAAATAAAATATAGT Cphy_3622 4474779 - 4473568 - | amidohydrolase 3 TERM 4979 4473643 - 4473658 + g 75 -9 -3.53224 | TCTTCCTATTAAGTG GGCAGA AGTC TCTGCC TTTACAAAAAGAATA TERM 4980 4474911 - 4474895 - H 76 -9.5 -3.12884 | overlap 4474894 ACATGTAATATAAAG TATGGAG TAG CTCCATA GTCAAGGGGGAAATT TERM 4981 4475448 - 4475461 + G 72 -8.1 -3.54475 | opp_overlap 4475433 4475447 4475445 GCAGAACTAAAAGGC CCTGC TTAC GCAGG TTCTATCATAAACCA Cphy_3623 4474929 - 4475753 + | MerR family transcriptional regulator TERM 4982 4475805 - 4475777 - T 95 -10.5 -4.33258 | opp_overlap 4475777 AGTTTTAAAGAGAAA TCCCCAAATAT TGTGAAC ATATTTGGGGA TTTGCTATTAAAAAG TERM 4983 4475777 - 4475805 + T 89 -10.5 -3.92324 | opp_overlap 4475777 AGTTTTAAAGAGAAA TCCCCAAATAT TGTGAAC ATATTTGGGGA TTTGCTATTAAAAAG TERM 4984 4475843 - 4475820 - T 90 -8.9 -4.7254 | opp_overlap 4475820 ATTTGCTATTAAAAA GACTTCGCA TATTTT CGCGAAGTC TTTTGGGTTAATTAT TERM 4985 4475820 - 4475843 + T 83 -8.2 -4.32804 | opp_overlap 4475820 ATTTGCTATTAAAAA GACTTCGC ATATTTTC GCGAAGTC TTTTGGGTTAATTAT Cphy_3624 4476343 - 4475855 - | hypothetical protein Cphy_3625 4477338 - 4476487 - | putative esterase Cphy_3626 4478070 - 4477567 - | chloramphenicol 3-O-phosphotransferase-like protein TERM 4986 4478312 - 4478286 - R 100 -14.6 -5.88565 | opp_overlap 4478286 TTTATAATAAAAAAA GCCTTGCAAACA CTG TATTTGCAAGGC TTTTGAATATATTGC TERM 4987 4478286 - 4478312 + r 100 -12.4 -4.28375 | opp_overlap 4478286 TTTATAATAAAAAAA GCCTTGCAAACA CTG TATTTGCAAGGC TTTTGAATATATTGC Cphy_3627 4478733 - 4478341 - | ribosomal protein S9 TERM 4988 4478617 - 4478636 + g 74 -3.6 -5.18297 | opp_overlap 4478621 TAATGTCTCAAGACC GAAATATG CATC CATATCTC TTTTATTTATTGTTA Cphy_3628 4479193 - 4478759 - | 50S ribosomal protein L13 TERM 4989 4479879 - 4479897 + G 84 -3.2 -5.66989 | TATGAAGATTGCCCA GATAGA AAATTAC TCTATC TTTTTTTCCTATTTA Cphy_3629 4479660 - 4481000 + | Signal transduction histidine kinase-like protein Cphy_3630 4481009 - 4481707 + | two component LuxR family transcriptional regulator TERM 4990 4481905 - 4481888 - f 87 -9.9 -3.88583 | opp_overlap 4481888 4481899, overlap 4481878 TAAACTGGCTATAAA CCATGAC TCCA GTCATGG TTTTTTATGACTATC TERM 4991 4481888 - 4481905 + F 100 -9.9 -5.29782 | opp_overlap 4481878 4481888, overlap 4481899 TAAACTGGCTATAAA CCATGAC TCCA GTCATGG TTTTTTATGACTATC TERM 4992 4482411 - 4482401 - g 78 -5.4 -4.90013 | opp_overlap 4482402, overlap 4482394 4482402 4482403 TAATTGAAGGAAAAA TTCC TAC GGAA CCCGGAGAGATAATT Cphy_3631 4481986 - 4483098 + | hypothetical protein Cphy_3632 4483225 - 4483908 + | ABC transporter related Cphy_3633 4483905 - 4485047 + | hypothetical protein TERM 4993 4485284 - 4485264 - T 100 -9.7 -5.61881 | opp_overlap 4485264 4485265, overlap 4485265 TTTTAAAAATAAAAA TGGATTGGG CTA CCCAATCCG TTTTTCTTATAAGTA TERM 4994 4485264 - 4485284 + T 100 -11.9 -5.20333 | opp_overlap 4485264 4485265, overlap 4485265 TTTTAAAAATAAAAA TGGATTGGG CTA CCCAATCCG TTTTTCTTATAAGTA TERM 4995 4485283 - 4485265 - T 100 -13.2 -3.95502 | opp_overlap 4485264 4485265, overlap 4485264 TTTAAAAATAAAAAT GGATTGGG CTA CCCAATCC GTTTTTCTTATAAGT TERM 4996 4485265 - 4485283 + T 100 -13.2 -3.71115 | opp_overlap 4485265 4485264, overlap 4485264 TTTAAAAATAAAAAT GGATTGGG CTA CCCAATCC GTTTTTCTTATAAGT Cphy_3634 4486028 - 4485291 - | tRNA pseudouridine synthase A Cphy_3635 4486982 - 4486170 - | cobalt transport protein TERM 4997 4486812 - 4486798 - G 72 -7.8 -3.67285 | opp_overlap 4486798 ACAATATATTTTAAA GGCACC TCA GATGCC TTAATTATACCAAAC TERM 4998 4486843 - 4486833 - G 78 -4 -5.35815 | TATACCAAACAAAAA TAAC CCC GTTA CAAGATAGCCCCAAA Cphy_3636 4487971 - 4487111 - | ABC transporter related TERM 4999 4487593 - 4487607 + g 70 -8.6 -3.09015 | opp_overlap 4487595, overlap 4487595 TACCTACCATTTTAA GAGCAT CAA ATGCTC TTAAATCAATCTCGA TERM 5000 4487607 - 4487639 + g 91 -9.3 -4.56597 | AGAGCATCAAATGCT CTTAAATCAATCTCG AGT TGAGGTAGATTTAAG TTTTTAGGGCCAAAC Cphy_3637 4488863 - 4487952 - | ABC transporter related TERM 5001 4489041 - 4489023 - R 70 -6.1 -4.18303 | ATCATAAACTATAAA GAAATTG TATTT CAATTTC CTATAAATCAAAAAA TERM 5002 4489081 - 4489058 - R 100 -13.2 -5.75822 | TATAAATCAAAAAAA CTGCCCCGAA TCAC TTCGAGGCAG TCCAATTTTCCCTAT Cphy_3638 4489698 - 4489162 - | ribosomal protein L17 Cphy_3639 4490682 - 4489723 - | DNA-directed RNA polymerase, alpha subunit TERM 5003 4489769 - 4489751 - G 72 -9.6 -2.72385 | opp_overlap 4489755, overlap 4489750 4489755 AAATTTAATGATAAT CCAAGCTC TTT GAGCTTAG CTAATACTTCTTCTA Cphy_3640 4491351 - 4490755 - | RNA-binding S4 domain-containing protein TERM 5004 4491213 - 4491236 + g 76 -6.2 -4.63932 | gap 1, overlap 4491218 CCTTTTGTTTTTCTC TTAGCTGAGTA CCG TACTCA-CTAA TTTTCTTACCCGCTC Cphy_3641 4491766 - 4491368 - | ribosomal protein S11 Cphy_3642 4492197 - 4491829 - | ribosomal protein S13 TERM 5005 4492242 - 4492252 + r 71 -6.8 -4.10657 | GAGCAGGACATCTTG GGCA TCA TGCC TTTTGGGACATGTGA TERM 5006 4492434 - 4492415 - R 76 -8.6 -3.38326 | overlap 4492418 TATAACCGTAATGAA CAACACAC CCTG GTGTGTCG ACGCGAGAATGTATT TERM 5007 4492493 - 4492475 - R 75 -2.4 -5.61596 | opp_overlap 4492485 ATTCCCATAAAAAAA GACACC TCTAGCG GATGTC ATTACGTCAGCCGCT Cphy_3643 4492901 - 4492788 - | ribosomal protein L36 TERM 5008 4492983 - 4493007 + r 90 -10.9 -3.83675 | overlap 4492974 ACTATTTTTTCTCTA TATTCCGAGAA AAT TTCTTGGAATA TTCTTGCTTGCATTA Cphy_3644 4493311 - 4493093 - | translation initiation factor IF-1 TERM 5009 4493430 - 4493441 + r 72 -7.2 -3.8062 | TCAGTGACAATATTT CCGG TTCT CCGG TTGTTATAACGATTG Cphy_3645 4494162 - 4493407 - | methionine aminopeptidase, type I TERM 5010 4493891 - 4493911 + g 74 -2.5 -5.29846 | opp_overlap 4493891 TCAAGACTTACGATA TCGCCTTCT TTT ATAATGCGA TTTTTCTTTGGAATT TERM 5011 4494191 - 4494216 + r 100 -12.7 -2.88427 | opp_overlap 4494187, overlap 4494195 4494215 TCTGTCACAAGCCTG CGAATTTGGGC GAAA GCTCAAATTCG TGTGTGAAAAATCTT Cphy_3646 4494921 - 4494268 - | nucleoside-triphosphate--adenylate kinase TERM 5012 4494949 - 4494981 + r 77 -9.3 -3.35679 | opp_overlap 4494949 4494958, overlap 4494958 CCTCCTATTATTTAA CAATAAAAAGTTTGC TTG GCAAACTTTTCCTTG TTCTGAATAAACCAA TERM 5013 4494981 - 4494949 - R 87 -11.5 -3.09516 | opp_overlap 4494949 4494958, overlap 4494958 CCTCCTATTATTTAA CAATAAAAAGTTTGC TTG GCAAACTTTTCCTTG TTCTGAATAAACCAA TERM 5014 4494958 - 4494972 + r 89 -8.6 -4.59414 | opp_overlap 4494949 4494958, overlap 4494949 ATTTAACAATAAAAA GTTTGC TTG GCAAAC TTTTCCTTGTTCTGA TERM 5015 4494972 - 4494958 - R 95 -8.6 -5.30348 | opp_overlap 4494958 4494949, overlap 4494949 ATTTAACAATAAAAA GTTTGC TTG GCAAAC TTTTCCTTGTTCTGA TERM 5016 4495044 - 4494993 - R 100 -18.4 -4.15044 | gap 1, opp_overlap 4494998 4495000 CTTGTTCTGAATAAA CCAACGATAGGAGCTGTCGCAAAAG TGT CTTTTACTACAGCTCCTAT-GTTAG TAATACAATAGGCAT TERM 5017 4494998 - 4495040 + r 100 -13.6 -3.21747 | opp_overlap 4494993, overlap 4495000 TCTGAATAAACCAAC GATAGGAGCTGTCGCAAAAG TGT CTTTTACTACAGCTCCTATG TTAGTAATACAATAG TERM 5018 4495000 - 4495038 + r 100 -16.2 -3.17229 | opp_overlap 4494993, overlap 4494998 TGAATAAACCAACGA TAGGAGCTGTCGCAAAAG TGT CTTTTACTACAGCTCCTA TGTTAGTAATACAAT Cphy_3647 4496421 - 4495093 - | preprotein translocase, SecY subunit Cphy_3648 4496863 - 4496423 - | ribosomal protein L15 Cphy_3649 4497072 - 4496890 - | ribosomal protein L30 Cphy_3650 4497598 - 4497092 - | ribosomal protein S5 Cphy_3651 4497983 - 4497615 - | ribosomal protein L18 Cphy_3652 4498543 - 4498001 - | ribosomal protein L6 Cphy_3653 4499198 - 4498797 - | ribosomal protein S8 Cphy_3654 4499392 - 4499222 - | ribosomal protein S14 Cphy_3655 4499963 - 4499424 - | ribosomal protein L5 Cphy_3656 4500305 - 4499988 - | ribosomal protein L24 Cphy_3657 4500688 - 4500320 - | ribosomal protein L14 Cphy_3658 4501006 - 4500749 - | ribosomal protein S17 Cphy_3659 4501280 - 4501071 - | ribosomal protein L29 Cphy_3660 4501707 - 4501270 - | 50S ribosomal protein L16 Cphy_3661 4502366 - 4501707 - | ribosomal protein S3 Cphy_3662 4502764 - 4502378 - | ribosomal protein L22 TERM 5019 4502535 - 4502554 + g 76 -6.4 -4.40993 | overlap 4502528 ATACCATTGTTGTTC TCAGCGTT TGCG ATCGCTGA TTTTAATAATTTCTC Cphy_3663 4503276 - 4502998 - | ribosomal protein S19 Cphy_3664 4504140 - 4503295 - | 50S ribosomal protein L2 Cphy_3665 4504620 - 4504321 - | ribosomal protein L25/L23 Cphy_3666 4505240 - 4504620 - | ribosomal protein L4/L1e Cphy_3667 4505904 - 4505269 - | ribosomal protein L3 TERM 5020 4505833 - 4505848 + g 82 -7.6 -4.41895 | TTGCAATACTGTTAC TGGAGT TAAA ACTCCA TTTTCATTGAAGATT Cphy_3668 4506413 - 4506096 - | ribosomal protein S10 TERM 5021 4506530 - 4506508 - R 86 -9.9 -3.76232 | GTCGGAAATATATAA CCTAAGACG CAACC CGTCCTAGG TGTCAATAAAAATCG TERM 5022 4507210 - 4507247 + r 84 -11 -3.06162 | gap 1, opp_overlap 4507219, overlap 4507219 ACACTTTGTACAAAG T-CAAAAAAAGAGATGA AAAAA TCATCTCTTTTTTTGTA TCTTAAACTAACATG TERM 5023 4507219 - 4507237 + r 100 -7.5 -5.80248 | opp_overlap 4507219, overlap 4507210 ACAAAGTCAAAAAAA GAGATGA AAAAA TCATCTC TTTTTTTGTATCTTA TERM 5024 4507237 - 4507219 - R 100 -7.5 -5.59564 | opp_overlap 4507219 4507210 ACAAAGTCAAAAAAA GAGATGA AAAAA TCATCTC TTTTTTTGTATCTTA Cphy_3669 4509559 - 4507271 - | methyl-accepting chemotaxis sensory transducer TERM 5025 4510048 - 4509998 - R 81 -4.3 -5.51402 | opp_overlap 4509998 4509999 4510002, overlap 4509999 ATATATCTAAAAAAA GCAATCAAAATATCCTGAA TTTTTTATCTTTT TTCTGGATATTTTGATTGT CTTTAACTGTATGTT TERM 5026 4509999 - 4510047 + r 71 -7.8 -3.45632 | opp_overlap 4509998 4509999, overlap 4509998 4510002 TATATCTAAAAAAAG CAATCAAAATATCCTGAA TTTTTTATCTTTT TTCTGGATATTTTGATTG TCTTTAACTGTATGT TERM 5027 4510047 - 4509999 - R 74 -7.8 -3.89215 | opp_overlap 4509999 4509998 4510002, overlap 4509998 TATATCTAAAAAAAG CAATCAAAATATCCTGAA TTTTTTATCTTTT TTCTGGATATTTTGATTG TCTTTAACTGTATGT Cphy_3670 4510467 - 4510144 - | cupin 2 domain-containing protein Cphy_3671 4511566 - 4510691 - | hypothetical protein Cphy_3672 4512049 - 4512726 + | phage shock protein A, PspA TERM 5028 4512741 - 4512775 + F 100 -13 -4.7497 | opp_overlap 4512738 ATTCTAAGTAATTGC TGCCACAAAGACAC TTATCCT GTGCCTTTGTGGCA TTTTTAATGAATGCA Cphy_3673 4512786 - 4513982 + | hypothetical protein Cphy_3674 4513979 - 4514980 + | hypothetical protein Cphy_3675 4514999 - 4516003 + | YdjI Cphy_3676 4517305 - 4516190 - | diguanylate cyclase TERM 5029 4517619 - 4517636 + r 79 -4.9 -5.1675 | ATCCTTTGCAGATTC CAGATAG GCAT TTATCTG TTTTTTAATCGGTAA Cphy_3677 4518149 - 4517601 - | BioY protein TERM 5030 4518385 - 4518363 - R 100 -8.5 -5.52986 | opp_overlap 4518361, overlap 4518349 ATCCTAGCAAAAAAA GGCTAAGAT ATGAA ATCTCAGCC TGTCGCTTCAAAAAT Cphy_3678 4518959 - 4518411 - | dTDP-4-dehydrorhamnose 3,5-epimerase Cphy_3679 4519862 - 4519005 - | dTDP-4-dehydrorhamnose reductase Cphy_3680 4520884 - 4519859 - | dTDP-glucose 4,6-dehydratase Cphy_3681 4521860 - 4520979 - | glucose-1-phosphate thymidylyltransferase TERM 5031 4521173 - 4521157 - G 86 -8.1 -4.37092 | ACTGTTTTTACAAAA TTAGTTG CCT CAACTAA AGATTCATGCGTCCC Cphy_3682 4523354 - 4522254 - | hypothetical protein TERM 5032 4523945 - 4523913 - R 100 -19.4 -6.01369 | opp_overlap 4523913 4523922 TAAACAACAAAAAAA GCTGAAGAATCGGA TCAAT TCCGATTCTTCAGC TTCCATAAATTTAGG TERM 5033 4523913 - 4523945 + r 100 -19.4 -3.11732 | opp_overlap 4523913, overlap 4523922 TAAACAACAAAAAAA GCTGAAGAATCGGA TCAAT TCCGATTCTTCAGC TTCCATAAATTTAGG Cphy_3683 4524876 - 4524010 - | fructose-1,6-bisphosphate aldolase, class II TERM 5034 4524101 - 4524111 + g 70 -5.4 -4.50058 | GCTAATAATTTACGT GGAT CAA ATCC TTTTCCTTGTAAATC Cphy_3684 4525221 - 4525018 - | hypothetical protein TERM 5035 4525427 - 4525466 + r 74 -5.9 -4.7339 | gap 1, opp_overlap 4525431, overlap 4525411 4525430 4525431 4525454 TCTGTGTAAAACCTA GAAA-TTCTTAGTCAGCG TATTT TGCTGGCTTAGAAATTTC TTTTTACGCTTTGTT Cphy_3685 4526369 - 4525470 - | phosphoesterase PA-phosphatase related TERM 5036 4526542 - 4526582 + r 100 -11.3 -4.4595 | opp_overlap 4526545, overlap 4526543 4526545 TCCTTCATATTGCAA AAAGGCTGTTACAAAACAA TAC TAGTTTTGTAACAGCCTAA TTTTAAGTTTTATAG TERM 5037 4526543 - 4526581 + r 100 -14.8 -3.26486 | opp_overlap 4526545, overlap 4526542 4526545 CCTTCATATTGCAAA AAGGCTGTTACAAAACAA TAC TAGTTTTGTAACAGCCTA ATTTTAAGTTTTATA TERM 5038 4526545 - 4526579 + r 100 -17.4 -3.17699 | opp_overlap 4526545, overlap 4526543 4526542 TTCATATTGCAAAAA GGCTGTTACAAAACAA TAC TAGTTTTGTAACAGCC TAATTTTAAGTTTTA TERM 5039 4526579 - 4526545 - R 100 -17.4 -4.64766 | opp_overlap 4526545 4526543 4526542 TTCATATTGCAAAAA GGCTGTTACAAAACAA TAC TAGTTTTGTAACAGCC TAATTTTAAGTTTTA Cphy_3686 4530393 - 4526626 - | DNA-directed RNA polymerase subunit beta' TERM 5040 4527558 - 4527540 - G 73 -7.4 -4.07568 | overlap 4527541 TTCTTGCCTCGAAAA GTTCCTCG ACA CGAGGAAG ACCCTGAGTAATATC TERM 5041 4527557 - 4527541 - G 79 -10.9 -3.04398 | overlap 4527540 TCTTGCCTCGAAAAG TTCCTCG ACA CGAGGAA GACCCTGAGTAATAT TERM 5042 4530027 - 4530012 - G 74 -7.6 -3.85698 | opp_overlap 4530011 4530008, overlap 4529983 4530026 GGGTTCTTGGAGAAA GGTCTA AGAT TAGACC CATTCTACTTGGGAT Cphy_3687 4534251 - 4530415 - | DNA-directed RNA polymerase, beta subunit TERM 5043 4534258 - 4534272 + r 74 -2.9 -5.44837 | TTTATCCATTGACGT TTTCA CCCCT TGAAA TTTTTCTATTTTTTT TERM 5044 4534413 - 4534423 + r 80 -5.4 -5.26918 | opp_overlap 4534413, overlap 4534407 CCGTTTTTTCAAAAG CACA TTT TGTG TTTTTTATGAAATAT TERM 5045 4534553 - 4534576 + r 82 -4.7 -5.51046 | gap 1, opp_overlap 4534553 TCATAGTATAGTCAA GCTGT-CAAT AGCAA ATTGTACAGC TTTTTTATATATTTC TERM 5046 4534702 - 4534686 - R 84 -10.9 -3.14132 | opp_overlap 4534685 4534684 TTTCCTTGTCATGAA TTAGGGG TAT CCCCTAA GATTTACCTCATAAT Cphy_3688 4537732 - 4535099 - | ATPase, P-type (transporting), HAD superfamily, subfamily IC TERM 5047 4536047 - 4536064 + g 71 -4.9 -4.61566 | gap 1, overlap 4536051 AAGCATAGCTCCTGT GATAGCCT CAG AGGC-ATC TTTTATAATTTCAAG TERM 5048 4537663 - 4537673 + g 70 -5.4 -4.4959 | TTTCGACTTCTTCTT TGGT AAG ACCA TTTTCATTACTTGCA TERM 5049 4537810 - 4537771 - R 100 -7.4 -5.53991 | gap 1, opp_overlap 4537773 TATTTATGAAAAAAA GCTTCTTTGACCAA-AGAA ATT CTCTTTTAGCCAAAAAAGC TCTTTCTCATTGGAA Cphy_3689 4539054 - 4537867 - | major facilitator transporter TERM 5050 4539209 - 4539188 - R 71 -3.1 -5.26316 | GTATGCTACAAAAAA TTTTTTTCA TGCA TGTAAAAAA CCACTCCAATCTGTT Cphy_3690 4539740 - 4539378 - | ribosomal protein L7/L12 Cphy_3691 4540311 - 4539817 - | ribosomal protein L10 TERM 5051 4540361 - 4540386 + r 73 -9 -2.86071 | opp_overlap 4540361, overlap 4540360 ACGGAATAAAAAAAA CTGCCTCCTG CGAAAA CAGGAGACAG ATTATTAGTCTAGCA TERM 5052 4540386 - 4540361 - R 100 -11.9 -6.11243 | opp_overlap 4540361 4540360 ACGGAATAAAAAAAA CTGCCTCCTGC GAAA ACAGGAGACAG ATTATTAGTCTAGCA Cphy_3692 4541295 - 4540603 - | ribosomal protein L1 Cphy_3693 4541782 - 4541354 - | ribosomal protein L11 Cphy_3694 4542431 - 4541913 - | NusG antitermination factor Cphy_3695 4542681 - 4542451 - | preprotein translocase, SecE subunit Cphy_3696 4542880 - 4542731 - | ribosomal protein L33 Cphy_3697 4544847 - 4543294 - | two component AraC family transcriptional regulator TERM 5053 4545128 - 4545099 - H 70 -7.2 -3.5947 | gap 1, opp_overlap 4545098 AAGCTTCACATATAA GTTTGTGCCTGCG TCGTC CTC-GGCACAAAC ATGGTTTTACGTGCG TERM 5054 4547046 - 4547016 - g 72 -8.2 -3.57144 | opp_overlap 4547016 4547016 TTCCTTAGTGGTAAA GAGGGAACCCCACT TAT AGAGGGATCCACTC TTAAATTAAGTAATC Cphy_3698 4545162 - 4547408 + | peptidase S8 and S53 subtilisin kexin sedolisin TERM 5055 4547506 - 4547557 + T 82 -7.6 -4.49716 | gap 1, opp_overlap 4547509 4547525, overlap 4547508 4547509 4547511 ACGTAGTTACAAGTT AAAGGGGGTTGATGCAA-AATAA TAATTCC TTATTATTGCATCAACCCTCGTA TTTTAACTTTTATTT TERM 5056 4547508 - 4547555 + T 87 -10.2 -3.8221 | gap 1, opp_overlap 4547509 4547525, overlap 4547506 4547509 4547511 GTAGTTACAAGTTAA AGGGGGTTGATGCAA-AATAA TAATTCC TTATTATTGCATCAACCCTCG TATTTTAACTTTTAT TERM 5057 4547509 - 4547554 + T 100 -13.7 -2.87699 | gap 1, opp_overlap 4547509 4547525, overlap 4547508 4547506 4547511 TAGTTACAAGTTAAA GGGGGTTGATGCAA-AATAA TAATTCC TTATTATTGCATCAACCCTC GTATTTTAACTTTTA TERM 5058 4547554 - 4547509 - T 95 -11.5 -3.81339 | gap 1, opp_overlap 4547509 4547508 4547506 4547511, overlap 4547525 TAGTTACAAGTTAAA GGGGGTTGATGCAA-AATAA TAATTCC TTATTATTGCATCAACCCTC GTATTTTAACTTTTA TERM 5059 4547511 - 4547552 + T 100 -12.7 -2.96755 | gap 1, opp_overlap 4547509 4547525, overlap 4547509 4547508 4547506 GTTACAAGTTAAAGG GGGTTGATGCAA-AATAA TAATTCC TTATTATTGCATCAACCC TCGTATTTTAACTTT Cphy_3699 4549472 - 4547679 - | oligoendopeptidase F TERM 5060 4549215 - 4549229 + g 70 -5.6 -4.3739 | ATAAGTAGAGTTTTT CGTGTC CTG GTCACG TTTTCTCGAAGAATA Cphy_3700 4550538 - 4549489 - | LacI family transcription regulator TERM 5061 4549832 - 4549852 + g 78 -9.7 -3.30443 | opp_overlap 4549817 4549836, overlap 4549817 4549836 TCCTCTGCTGACTCA GCAAGGCGA TAT TCGCCTTCC TTCATGTAATACTCC TERM 5062 4549836 - 4549848 + g 73 -9.1 -3.43785 | opp_overlap 4549817 4549836, overlap 4549817 4549832 CTGCTGACTCAGCAA GGCGA TAT TCGCC TTCCTTCATGTAATA TERM 5063 4549848 - 4549836 - G 71 -9.1 -3.18264 | opp_overlap 4549817 4549836 4549832, overlap 4549817 CTGCTGACTCAGCAA GGCGA TAT TCGCC TTCCTTCATGTAATA Cphy_3701 4551127 - 4550621 - | heptaprenyl diphosphate synthase component I TERM 5064 4551263 - 4551233 - R 95 -11.4 -3.91042 | opp_overlap 4551233 4551243, overlap 4551224 4551243 CATAAAGAAGTTAAA TCTTCATAAAGATG TTT CATCTTTACAAAGA GGTTTAATTCATAAA TERM 5065 4551490 - 4551458 - R 100 -9.9 -4.82901 | opp_overlap 4551452 4551458, overlap 4551476 4551481 TGGCGCGCACAAAAA CGCGCAGCAATTATA CAA CAAAATCGCTACGCG TTTTAGGTTTAAATA Cphy_3702 4552958 - 4551609 - | hypothetical protein Cphy_3703 4553475 - 4552948 - | hypothetical protein Cphy_3704 4555967 - 4553493 - | S-layer-like domain-containing protein Cphy_3705 4556972 - 4556091 - | ABC transporter related TERM 5066 4556699 - 4556715 + g 100 -8.1 -5.50313 | TGGCTAGATTATTTT CATTCAT CTT ATGAATG TTTTTTCCTTTTATA TERM 5067 4557318 - 4557284 - R 73 -7.9 -3.71848 | CCTTGTCATGAATAA CCGGATGATGACATA GAATA CAAATCACCATCCGG AACAACTTATATTTT Cphy_3706 4558016 - 4557402 - | hypothetical protein Cphy_3707 4560750 - 4558120 - | transglutaminase domain-containing protein TERM 5068 4558632 - 4558650 + g 80 -6.6 -4.85396 | opp_overlap 4558632 TAGGTTTTGGAGCAA CCGTTACC GTA GGTGTCGG TTTTATTGTACTTGT Cphy_3708 4561965 - 4560751 - | hypothetical protein Cphy_3709 4562928 - 4561978 - | ATPase TERM 5069 4562957 - 4562982 + r 100 -12.7 -3.87641 | TCTGTGGCAATCCTG CGAATTTGGGC GAGT GTCCAAATTCG TTTGTGAAAAATCTT TERM 5070 4563239 - 4563183 - R 100 -29.4 -2.84574 | opp_overlap 4563183 4563186 4563197 4563200, overlap 4563186 4563197 4563200 TAGCCTAATTAATGA TAAGAGCCCTTAAAGAATAGATTGGT GTTTT ACCAATCTATTCTTTAAGAGCTCTTA TGAATTATAAATCTT TERM 5071 4563183 - 4563239 + r 100 -27.9 -2.61374 | opp_overlap 4563183 4563186 4563197 4563200, overlap 4563186 4563197 4563200 TAGCCTAATTAATGA TAAGAGCCCTTAAAGAATAGATTGGTG TTT TACCAATCTATTCTTTAAGAGCTCTTA TGAATTATAAATCTT TERM 5072 4563186 - 4563236 + r 100 -25.2 -3.45321 | opp_overlap 4563183 4563186 4563197 4563200, overlap 4563183 4563197 4563200 CCTAATTAATGATAA GAGCCCTTAAAGAATAGATTGGTG TTT TACCAATCTATTCTTTAAGAGCTC TTATGAATTATAAAT TERM 5073 4563236 - 4563186 - R 100 -26.7 -3.56727 | opp_overlap 4563186 4563183 4563197 4563200, overlap 4563183 4563197 4563200 CCTAATTAATGATAA GAGCCCTTAAAGAATAGATTGGT GTTTT ACCAATCTATTCTTTAAGAGCTC TTATGAATTATAAAT TERM 5074 4563197 - 4563225 + r 100 -14.1 -3.57883 | opp_overlap 4563186 4563183 4563197 4563200, overlap 4563186 4563183 4563200 ATAAGAGCCCTTAAA GAATAGATTGGTG TTT TACCAATCTATTC TTTAAGAGCTCTTAT TERM 5075 4563225 - 4563197 - R 100 -13.4 -3.57883 | opp_overlap 4563197 4563186 4563183 4563200, overlap 4563186 4563183 4563200 ATAAGAGCCCTTAAA GAATAGATTGGT GTTTT ACCAATCTATTC TTTAAGAGCTCTTAT TERM 5076 4563222 - 4563200 - R 81 -9.3 -3.91984 | opp_overlap 4563200 4563197 4563186 4563183, overlap 4563197 4563186 4563183 AGAGCCCTTAAAGAA TAGATTGGT GTTTT ACCAATCTA TTCTTTAAGAGCTCT TERM 5077 4563200 - 4563222 + r 87 -10 -3.91984 | opp_overlap 4563197 4563186 4563183 4563200, overlap 4563197 4563186 4563183 AGAGCCCTTAAAGAA TAGATTGGTG TTT TACCAATCTA TTCTTTAAGAGCTCT Cphy_3710 4564098 - 4563244 - | phosphomethylpyrimidine kinase type-1 Cphy_3711 4565051 - 4564425 - | hypothetical protein Cphy_3712 4565582 - 4565097 - | hypothetical protein TERM 5078 4565227 - 4565217 - G 76 -6.8 -4.50976 | opp_overlap 4565216 GTTTATACCACAAAA GCGA ACC TCGC CATTTAGAATCACCG Cphy_3713 4565862 - 4565569 - | MerR family transcriptional regulator TERM 5079 4565997 - 4565948 - R 74 -5.9 -4.57073 | opp_overlap 4565996, overlap 4565949 4565960 TATGCGTGCCAAAAA TCATAAAAAAAAGGAACCAAACC CGAA AGTTCGACTCCTTTTTCCCATGC GAGTTTTCCTCGCTA TERM 5080 4565996 - 4565949 - R 78 -9.4 -3.33922 | overlap 4565948 4565960 ATGCGTGCCAAAAAT CATAAAAAAAAGGAACCAAACC CGAA AGTTCGACTCCTTTTTCCCATG CGAGTTTTCCTCGCT TERM 5081 4565985 - 4565960 - R 93 -4.7 -6.04378 | overlap 4565949 4565948 AAATCATAAAAAAAA GGAACCAAACC CGAA AGTTCGACTCC TTTTTCCCATGCGAG TERM 5082 4566125 - 4566148 + r 74 -9.6 -2.51725 | opp_overlap 4566125 4566123, overlap 4566124 4566123 TTTCTTTATGAAATA CTGCCCGT CTTTTGCA ACGGGCAG ATATTAATATACCAT TERM 5083 4566148 - 4566125 - R 85 -10.3 -3.44848 | opp_overlap 4566124 4566123 4566125, overlap 4566123 TTTCTTTATGAAATA CTGCCCGTC TTTTGC AACGGGCAG ATATTAATATACCAT Cphy_3714 4567729 - 4566272 - | hypothetical protein TERM 5084 4567934 - 4567905 - R 71 -6.6 -4.13995 | opp_overlap 4567900 4567906, overlap 4567870 4567900 4567906 TCTCGATAAATCAAA CTTTGATGCATT TGACTT AATGCATCAAAT CTCTATAATCTTCCT TERM 5085 4567906 - 4567933 + r 81 -10.1 -3.05727 | opp_overlap 4567870 4567900 4567905 4567906, overlap 4567900 CTCGATAAATCAAAC TTTGATGCATT TGACTT AATGCATCAAA TCTCTATAATCTTCC TERM 5086 4567933 - 4567906 - R 81 -10.1 -3.07915 | opp_overlap 4567900 4567906, overlap 4567870 4567900 4567905 CTCGATAAATCAAAC TTTGATGCATT TGACTT AATGCATCAAA TCTCTATAATCTTCC Cphy_3715 4568540 - 4568100 - | hypothetical protein TERM 5087 4568697 - 4568659 - H 100 -11.9 -4.69487 | gap 1, opp_overlap 4568659 AAATATACAAATAAA CAGCCGAGAAACC-TAGT AAAA ACAATAGTTTCTCGGCTG TTTTCAATTACTGCA TERM 5088 4568659 - 4568697 + H 90 -9.8 -4.30014 | gap 1, opp_overlap 4568659 AAATATACAAATAAA CAGCCGAGAAACCTAGT AAAAAC AATA-GTTTCTCGGCTG TTTTCAATTACTGCA TERM 5089 4568854 - 4568841 - H 74 -3.9 -5.13473 | overlap 4568843 ACTACAGCTAAAAAA TTTCA ACTA TGAAA CTATAGTTAAGTAAG TERM 5090 4569559 - 4569536 - g 73 -3.4 -5.2422 | gap 1, opp_overlap 4569528 4569536 4569549, overlap 4569528 AATGACACTAAAAAA TTTAGATTCAT CTC AT-AATCTAAA TTATGCTTTATACAA Cphy_3716 4569180 - 4570511 + | LuxR family transcriptional regulator Cphy_3717 4570749 - 4571093 + | hypothetical protein TERM 5091 4571362 - 4571324 - T 82 -6.3 -5.11613 | gap 1, opp_overlap 4571324 ACATTATGTAAAAAA CTCTCTATAGAATA-TAA ATCA TCATTATTCTATGGAGAG TTTATGTTGCTTACT TERM 5092 4571324 - 4571362 + T 74 -7 -4.28323 | opp_overlap 4571324 ACATTATGTAAAAAA CTCTCTATAGAATA TAAATCATCAT TATTCTATGGAGAG TTTATGTTGCTTACT Cphy_3718 4571826 - 4571377 - | D-tyrosyl-tRNA(Tyr) deacylase Cphy_3719 4573135 - 4571963 - | phosphopentomutase TERM 5093 4572824 - 4572811 - G 73 -6.7 -4.22346 | opp_overlap 4572810 CAAACTCATCCAAAA GTTCC TTAG GGAAC CCTTCTGGAAATGTA Cphy_3720 4573309 - 4573980 + | phosphatase TERM 5094 4574013 - 4574051 + T 100 -9 -5.60993 | opp_overlap 4574012 4574014, overlap 4574014 ATACGATAGTAACAG AGGTGTTGTTAAGATATT AAA AGTACCTTAGCAACACCA TTTTTTTATCCAAAC TERM 5095 4574050 - 4574014 - T 83 -10.3 -3.16785 | opp_overlap 4574013 4574014, overlap 4574012 TACGATAGTAACAGA GGTGTTGTTAAGATATT AAA AGTACCTTAGCAACACC ATTTTTTTATCCAAA TERM 5096 4574014 - 4574050 + T 100 -12.5 -3.95873 | opp_overlap 4574014 4574012, overlap 4574013 TACGATAGTAACAGA GGTGTTGTTAAGATATT AAA AGTACCTTAGCAACACC ATTTTTTTATCCAAA Cphy_3721 4575073 - 4574057 - | glycosyl transferase family protein Cphy_3722 4577664 - 4575091 - | hypothetical protein Cphy_3723 4578906 - 4577671 - | hypothetical protein TERM 5097 4578640 - 4578650 + g 72 -4 -4.98522 | TAGTATATTAACCTG CTTT AGT AAAG TTTTTATCTCCACTT TERM 5098 4578955 - 4578982 + H 74 -9.2 -3.04501 | opp_overlap 4578953 CCTCGTCTATAACTG CTCTTTGTCTTG CTTT CGAGACAAAGCG TATTACCAAGTTACT Cphy_3724 4579161 - 4579754 + | hypothetical protein TERM 5099 4579813 - 4579837 + T 100 -12.9 -5.27399 | opp_overlap 4579813 TAAAATGGTAAAAAA GAGGCTTCCGT ATA ACAGAAGCCTC TTTTTTACTCTCTTA TERM 5100 4579837 - 4579813 - T 100 -15.1 -5.15117 | opp_overlap 4579813 TAAAATGGTAAAAAA GAGGCTTCCGT ATA ACAGAAGCCTC TTTTTTACTCTCTTA Cphy_3725 4580838 - 4579966 - | histidine kinase TERM 5101 4580356 - 4580367 + g 74 -4.4 -4.90136 | opp_overlap 4580356 ATAGCTAACCGATAA CAAG ACAC CTTG TTTTTCATATTCCTT Cphy_3726 4580918 - 4581334 + | histidine triad (HIT) protein TERM 5102 4581453 - 4581505 + T 100 -12.4 -4.87318 | opp_overlap 4581453 CTAGAAATAGAAAAA GCAGAAATCAAACAATGTATTTTT AAACA AAATATACATCATTTGATTTCTGC TTTTTAAATTTTAAC TERM 5103 4581505 - 4581453 - T 100 -16.8 -5.24799 | opp_overlap 4581453 CTAGAAATAGAAAAA GCAGAAATCAAACAATGTATTTTT AAACA AAATATACATCATTTGATTTCTGC TTTTTAAATTTTAAC Cphy_3727 4582656 - 4581589 - | UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase Cphy_3728 4583026 - 4582778 - | hypothetical protein Cphy_3729 4583287 - 4583991 + | adenosylhomocysteine nucleosidase TERM 5104 4583995 - 4584007 + F 72 -4.9 -4.83615 | overlap 4583989 CCAGAGATTTAAGCC TCTTA CTT TAAGA TTTTTATAGCAAATG TERM 5105 4584265 - 4584242 - g 72 -3.9 -5.06816 | opp_overlap 4584245, overlap 4584245 AGCGGTCAATAAAAA TATCCTTTC TACTAC GAAAGGTTA TATCCTTTATTGTCA Cphy_3730 4584093 - 4584605 + | helix-turn-helix type 11 domain-containing protein TERM 5106 4584735 - 4584760 + F 100 -11.3 -5.02074 | opp_overlap 4584735 ATTTCTGTCAAGACA GCTGTATATAC GCCT GTATATGCAGC TTTTTTAAACGATAG TERM 5107 4584760 - 4584735 - f 74 -9.1 -3.06815 | opp_overlap 4584735 ATTTCTGTCAAGACA GCTGTATATAC GCCT GTATATGCAGC TTTTTTAAACGATAG Cphy_3731 4584824 - 4585897 + | phosphotransferase system, EIIC TERM 5108 4586030 - 4586000 - T 85 -8.4 -4.71828 | opp_overlap 4586000 ATGCCATGAATAAAA GCACCAAACAGA ATTTTCA TCTACTTGGTGC TTTATCATTTTCTAT TERM 5109 4586171 - 4586134 - T 75 -9.5 -2.94313 | gap 1, opp_overlap 4586134 4586144, overlap 4586144 AGACCTGAAGAATGA GAATAAAAAAGAAATTCC AAT GGA-TTTCATTTTTATTC TTCTAGTGTGAAGTT TERM 5110 4586134 - 4586171 + T 87 -10.9 -3.47345 | opp_overlap 4586134 4586144, overlap 4586144 AGACCTGAAGAATGA GAATAAAAAAGAAATTC CAAT GGATTTCATTTTTATTC TTCTAGTGTGAAGTT TERM 5111 4586161 - 4586144 - T 79 -3.5 -5.59534 | gap 1, opp_overlap 4586144 4586134, overlap 4586134 AATGAGAATAAAAAA GAAATTCC AAT GGA-TTTC ATTTTTATTCTTCTA Cphy_3732 4586772 - 4586209 - | phosphodiesterase TERM 5112 4587134 - 4587115 - g 84 -4.4 -5.56264 | gap 1, overlap 4587119 GGTAAATATAAAAAA TCT-ATGGT AGC ACCATTAGA ATATAGAAATTATGC TERM 5113 4587476 - 4587465 - g 74 -4.4 -5.03747 | AAATGGTCCAAAAAA CAGA TTAC TCTG TGAAAAGGCATATAA Cphy_3733 4587028 - 4587873 + | glycerophosphoryl diester phosphodiesterase TERM 5114 4588031 - 4587981 - T 88 -9.2 -4.27742 | opp_overlap 4587985 4587986, overlap 4587986 ATAAAAAGGAAATAA GAAGAGAACCCAAAATGTTAGA TTTTAGT CCAAACATTTTGGGTTCATTTC AATTTAACTTCCTTT TERM 5115 4587985 - 4588027 + T 74 -7.9 -3.8698 | opp_overlap 4587981 4587986, overlap 4587986 AAAGGAAATAAGAAG AGAACCCAAAATGTTAG ATTTTAGTC CAAACATTTTGGGTTCA TTTCAATTTAACTTC TERM 5116 4588026 - 4587986 - T 95 -12.1 -3.65974 | opp_overlap 4587985 4587986, overlap 4587981 AAGGAAATAAGAAGA GAACCCAAAATGTTAGA TTTTAGT CCAAACATTTTGGGTTC ATTTCAATTTAACTT TERM 5117 4587986 - 4588026 + T 86 -11.4 -2.91465 | opp_overlap 4587986 4587981, overlap 4587985 AAGGAAATAAGAAGA GAACCCAAAATGTTAG ATTTTAGTC CAAACATTTTGGGTTC ATTTCAATTTAACTT Cphy_3734 4588929 - 4588069 - | hypothetical protein Cphy_3735 4589401 - 4588982 - | ATP synthase F1, epsilon subunit Cphy_3736 4590829 - 4589411 - | F0F1 ATP synthase subunit beta Cphy_3737 4591723 - 4590848 - | ATP synthase F1, gamma subunit TERM 5118 4590892 - 4590923 + g 76 -10.2 -3.10164 | opp_overlap 4590902, overlap 4590898 TCTCTGTTAACTCTT GTGTAATCGAGCTC TGAC GAGCACGGTTATAC TTAAGTGATAAATCA TERM 5119 4591247 - 4591225 - G 72 -9.2 -2.6415 | opp_overlap 4591225 4591228, overlap 4591228 TAAAGGAGGTATAAG CAAGGTAGAT TTC ACCTACCTCG TCTGCTACAAACGCA Cphy_3738 4593250 - 4591742 - | ATP synthase F1, alpha subunit TERM 5120 4592007 - 4592023 + g 84 -5.1 -5.35815 | AAGATTTCGCGAATT CTTTCAC CTT GTGCAAG TTTTTCTTTGGTATC Cphy_3739 4593856 - 4593308 - | ATP synthase F1, delta subunit Cphy_3740 4594428 - 4593844 - | ATP synthase F0, B subunit Cphy_3741 4594728 - 4594468 - | F0F1 ATP synthase subunit C Cphy_3742 4595520 - 4594777 - | ATP synthase F0, A subunit TERM 5121 4594913 - 4594897 - G 79 -8.1 -4.15703 | overlap 4594891 CGGTACAAATAATAA TATTACC TTT GGTAATA ATCCATAAATCAATC Cphy_3743 4595939 - 4595559 - | hypothetical protein Cphy_3744 4596293 - 4596000 - | hypothetical protein Cphy_3745 4596978 - 4596550 - | RpiB/LacA/LacB family sugar-phosphate isomerase TERM 5122 4597012 - 4597035 + r 100 -14 -3.82061 | GTTCTTTCGTTTATT CGGTTCTATG GTAA CATAGAACCG TTATCTTGTATATCA Cphy_3746 4597565 - 4597110 - | protein tyrosine phosphatase Cphy_3747 4598668 - 4597610 - | Sua5/YciO/YrdC/YwlC family protein Cphy_3748 4599443 - 4598730 - | cell wall hydrolase/autolysin Cphy_3749 4601201 - 4599498 - | glycoside hydrolase family protein Cphy_3750 4602433 - 4601831 - | hypothetical protein TERM 5123 4601959 - 4601979 + g 91 -4.7 -5.95166 | overlap 4601960 4601961 TTAATGACTTTTTTG TAGCCATAT TAC ATATGGCCG TTTTTTTTAATTGAG TERM 5124 4601961 - 4601977 + g 74 -9.5 -3.07657 | overlap 4601960 4601959 AATGACTTTTTTGTA GCCATAT TAC ATATGGC CGTTTTTTTTAATTG Cphy_3751 4603992 - 4602556 - | serine/threonine protein kinase TERM 5125 4603983 - 4603969 - G 74 -2.8 -5.42164 | opp_overlap 4603971, overlap 4603971 TATAAACAAGAAAAA GAGCTT TCT AAGCTT CCTTGTCATGAATTA Cphy_3752 4604264 - 4605049 + | negative regulator of genetic competence sporulation and motility-like protein TERM 5126 4605127 - 4605082 - T 93 -6.3 -5.56568 | opp_overlap 4605089 4605094, overlap 4605094 ACACTAGCAAAAAAA TTATATAAAAAATGGGCTGTA ATCC TACAGCCCATTTCCTTTTTTA TTCTATATTATCGAA TERM 5127 4605089 - 4605120 + T 100 -8.8 -5.62045 | opp_overlap 4605082 4605094, overlap 4605094 CAAAAAAATTATATA AAAAATGGGCTGTA ATCC TACAGCCCATTTCC TTTTTTATTCTATAT TERM 5128 4605115 - 4605094 - T 100 -13.1 -5.43487 | opp_overlap 4605094 4605089, overlap 4605082 AAATTATATAAAAAA TGGGCTGTA ATCC TACAGCCCA TTTCCTTTTTTATTC TERM 5129 4605094 - 4605115 + T 100 -13.1 -4.51301 | opp_overlap 4605082 4605094, overlap 4605089 AAATTATATAAAAAA TGGGCTGTA ATCC TACAGCCCA TTTCCTTTTTTATTC TERM 5130 4605302 - 4605318 + T 71 -8 -3.25525 | opp_overlap 4605300, overlap 4605301 GATAATCAGATTAGC GGTGCA AAAAA TGCACC ATTTATATTATTTTG Cphy_3753 4605526 - 4605326 - | hypothetical protein Cphy_3754 4605787 - 4605954 + | 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein TERM 5131 4606046 - 4606094 + T 77 -4 -5.33866 | gap 1 TATCATGTACAAAAA GGGGCTTTTGCAAAATAGA-TGA GTAA TCAATCTATCGAGTAAAAGCTCC TTTTTTATCACTTTC Cphy_3755 4607064 - 4606180 - | MerR family transcriptional regulator TERM 5132 4607206 - 4607184 - R 100 -12.1 -6.24157 | opp_overlap 4607180 ATCTATAAAAAAAAA GAGGGTGTT GCAAA AACACCCTC TAAAACTTTTTAATT Cphy_3756 4608664 - 4607336 - | replicative DNA helicase TERM 5133 4608059 - 4608075 + g 82 -8 -4.4648 | CAATATTAAATCCGA TGGCTG TAGGC CAGCCA TTTTATAATCCAAAT Cphy_3757 4609125 - 4608679 - | ribosomal protein L9 Cphy_3758 4611180 - 4609126 - | phosphoesterase domain-containing protein TERM 5134 4609457 - 4609446 - G 71 -4.4 -4.88067 | opp_overlap 4609446 ACTTATCCATAAAAA CTTC GGTT GAAG TAATTGCCGCCGCCT Cphy_3759 4611614 - 4612393 + | PT repeat-containing protein TERM 5135 4612539 - 4612503 - f 90 -9.5 -4.23758 | opp_overlap 4612503 4612506 4612511, overlap 4612506 ACTTTATACTGAAAA GAACAAGACAGTGCAGA TTT TATGCCCTGTTTTGTTC TTTCTGCCAAATATC TERM 5136 4612503 - 4612539 + F 100 -11.7 -3.87373 | opp_overlap 4612503 4612506, overlap 4612506 4612511 ACTTTATACTGAAAA GAACAAGACAGTGCAGA TTT TATGCCCTGTTTTGTTC TTTCTGCCAAATATC TERM 5137 4612506 - 4612536 + F 77 -7.6 -4.06687 | opp_overlap 4612506 4612503, overlap 4612503 4612511 TTATACTGAAAAGAA CAAGACAGTGCAGA TTT TATGCCCTGTTTTG TTCTTTCTGCCAAAT TERM 5138 4612511 - 4612531 + F 70 -3.9 -5.05116 | opp_overlap 4612506 4612503, overlap 4612506 4612503 CTGAAAAGAACAAGA CAGTGCAGA TTT TATGCCCTG TTTTGTTCTTTCTGC Cphy_3760 4612808 - 4613335 + | hypothetical protein TERM 5139 4613447 - 4613395 - T 89 -7.5 -5.05505 | gap 3, opp_overlap 4613396 4613398, overlap 4613398 ATTATAAACTAAAAA GAAGAACAGACTAAATTATCC--CAA TCTA TTGACGGATAATTTCGTCTGTTC-TC TTGTTCTGCTTATAA TERM 5140 4613396 - 4613447 + T 74 -7.7 -3.91357 | gap 2, opp_overlap 4613395 4613398, overlap 4613398 TTATAAACTAAAAAG AAGAACAGACTAAATTATCC--CAA TCTA TTGACGGATAATTTCGTCTGTTCTC TTGTTCTGCTTATAA TERM 5141 4613398 - 4613445 + T 85 -10.3 -3.53597 | gap 2, opp_overlap 4613395 4613398, overlap 4613396 ATAAACTAAAAAGAA GAACAGACTAAATTATCC--CAA TCTA TTGACGGATAATTTCGTCTGTTC TCTTGTTCTGCTTAT TERM 5142 4613445 - 4613398 - T 95 -10.3 -4.60053 | gap 2, opp_overlap 4613398 4613396, overlap 4613395 ATAAACTAAAAAGAA GAACAGACTAAATTATCC--CAA TCTA TTGACGGATAATTTCGTCTGTTC TCTTGTTCTGCTTAT Cphy_3761 4614553 - 4613489 - | hypothetical protein Cphy_3762 4616020 - 4614692 - | MATE efflux family protein TERM 5143 4617071 - 4617085 + G 70 -2.8 -5.1675 | overlap 4617072 ATTTAAAGGTGCTAC TTACGG TAC CTGTAG TTTTTTAATGGATGG Cphy_3763 4616349 - 4617227 + | hypothetical protein TERM 5144 4617406 - 4617448 + T 100 -16 -3.1994 | gap 1, opp_overlap 4617406 ATGAGATGCAGCAAA GATGAGCCAACATTAAATC CTATGA GATT-AATGTTGGCTCATC TTAATAACTAATCTG TERM 5145 4617448 - 4617406 - T 100 -16.7 -3.7829 | gap 1, opp_overlap 4617406 ATGAGATGCAGCAAA GATGAGCCAACATTAAATCC TATG AGAT-TAATGTTGGCTCATC TTAATAACTAATCTG Cphy_3764 4618257 - 4617559 - | GntR family transcriptional regulator Cphy_3765 4618942 - 4618241 - | hypothetical protein TERM 5146 4618705 - 4618726 + g 70 -3.1 -5.03314 | TTATCTCTTCTGACT TTTGAATTA CCTG TAAGTCAAA TTTTTTAGCAATCAC Cphy_3766 4621161 - 4619029 - | hydantoinase/oxoprolinase TERM 5147 4621275 - 4621323 + r 73 -8.4 -3.55447 | gap 2, opp_overlap 4621274 4621275 4621287, overlap 4621273 4621281 4621282 CATACTATTTAAAAT CAGTTTGTAAAACTGGCTGCTGTT GTA AGCAGCAGCCAG--TTAAAATCTG TTCTATACTAGATGA TERM 5148 4621281 - 4621319 + r 78 -9.6 -3.24076 | opp_overlap 4621275 4621274 4621287, overlap 4621273 4621275 4621282 ATTTAAAATCAGTTT GTAAAACTGGCTGCTGTT GTA AGCAGCAGCCAGTTAAAA TCTGTTCTATACTAG TERM 5149 4621282 - 4621318 + r 100 -13.1 -2.53964 | opp_overlap 4621275 4621274 4621287, overlap 4621273 4621281 4621275 TTTAAAATCAGTTTG TAAAACTGGCTGCTGTT GTA AGCAGCAGCCAGTTAAA ATCTGTTCTATACTA TERM 5150 4621313 - 4621287 - R 100 -15.2 -4.10429 | opp_overlap 4621273 4621282 4621281 4621275, overlap 4621275 4621274 AATCAGTTTGTAAAA CTGGCTGCTGTT GTA AGCAGCAGCCAG TTAAAATCTGTTCTA Cphy_3767 4622675 - 4621326 - | citrate transporter TERM 5151 4621751 - 4621741 - G 70 -5.4 -4.4634 | AAGGTTAATAAGAAA CCAA TCA TTGG AGCTACATCAATAGC TERM 5152 4622765 - 4622812 + r 83 -11.1 -2.8598 | gap 1, opp_overlap 4622753, overlap 4622749 4622762 TAACATGCTATTTCT TCAACTAACATGTTAGTTAT CTTAATTGC ATA-CTAACATGTTAGTTGA TGCTTGTCAATATGT TERM 5153 4623159 - 4623138 - R 90 -9.5 -4.33182 | opp_overlap 4623140, overlap 4623135 TTATGCATAAAATAA GACCTTCCA TACT TGAAAGGTC CTGTAAATCATATTA Cphy_3768 4623866 - 4623483 - | hypothetical protein TERM 5154 4623596 - 4623572 - G 71 -4.9 -4.70659 | opp_overlap 4623592 TTTTACACTCAAAAA CCCCTGGCTGA CTT TCAACCGAAGG TGAAGAACCCTCTAA Cphy_3769 4624492 - 4623893 - | hypothetical protein Cphy_3770 4625195 - 4624494 - | hypothetical protein Cphy_3771 4626509 - 4625208 - | antifreeze protein type I TERM 5155 4626711 - 4626664 - R 100 -10.6 -4.75404 | opp_overlap 4626699 AAACTGTACGAAAAA GCCGCTGCACAACCTAAGTGAA ATAT TTCACTCTGGCCATGTAACGGC TTCATTAATAAAATT Cphy_3772 4627000 - 4626725 - | 30S ribosomal protein S18 Cphy_3773 4627519 - 4627079 - | single-strand binding protein Cphy_3774 4627826 - 4627539 - | ribosomal protein S6 TERM 5156 4628033 - 4627995 - R 100 -12.4 -4.03234 | opp_overlap 4628006 4628027 GTTTTTCTATACAAA CTGCCCACAACTTGGGGG TAA CCCAGTAGTTGTGAGCAG CTATAGATGTTCATT Cphy_3775 4628507 - 4628322 - | hypothetical protein TERM 5157 4628455 - 4628468 + g 84 -4.5 -5.48054 | TCCCATTCATTACTA CCGCA TGGA TGTGG TTTTTTCATTTTAAT TERM 5158 4628930 - 4628916 - g 70 -8.6 -3.06183 | TCCACTTTTACTTAA GGCATA TCA TATGCC TGGACATATTCCGCT Cphy_3776 4628800 - 4629471 + | hemolysin III family channel protein TERM 5159 4629567 - 4629514 - T 100 -23.3 -4.99645 | opp_overlap 4629517, overlap 4629517 ATGCCATAAATAAAA CAAGGGTGCTGCCCAAACGACCGGT CGTT ACCGATTGTGTGGGCAGCACCCTTT GATCTATGTCAAGCA TERM 5160 4629564 - 4629517 - T 100 -25 -4.58946 | opp_overlap 4629517, overlap 4629514 CCATAAATAAAACAA GGGTGCTGCCCAAACGACCGGT CGTT ACCGATTGTGTGGGCAGCACCC TTTGATCTATGTCAA TERM 5161 4629517 - 4629564 + T 100 -25 -3.91196 | opp_overlap 4629517 4629514 CCATAAATAAAACAA GGGTGCTGCCCAAACGACCGGT CGTT ACCGATTGTGTGGGCAGCACCC TTTGATCTATGTCAA TERM 5162 4629858 - 4629835 - T 70 -8.2 -3.15784 | gap 1, overlap 4629831 4629834 CTTATAATAAAGAAT GTGCATGGCAG ATT CT-CCACGCAC GAGCAGGTCGTAAAG TERM 5163 4629925 - 4629885 - T 84 -6.3 -5.16206 | opp_overlap 4629885 AAAGTAACATAAAAA CACTTGGTTGGACAG ACATTTTCACA CTATCCAATCAAGTG TTCACTTTTACTAAG Cphy_3777 4630855 - 4630004 - | peptidase M23B Cphy_3778 4631749 - 4630973 - | hypothetical protein Cphy_3779 4632532 - 4631756 - | hypothetical protein TERM 5164 4632250 - 4632225 - G 77 -8.4 -3.85817 | overlap 4632226 ACTGCCTTTGATAAA CGGTTTGCAA TATTTC TTGCAAACCA CATCGAGTATAAATC TERM 5165 4632249 - 4632226 - G 75 -9.7 -2.91276 | overlap 4632225 CTGCCTTTGATAAAC GGTTTGCAA TATTTC TTGCAAACC ACATCGAGTATAAAT Cphy_3780 4633419 - 4632622 - | ABC transporter related TERM 5166 4634472 - 4634461 - g 74 -4.4 -4.9448 | ATTCATGAAAGAAAA CGAT GGAT ATCG CGACGCAGAATTAAA Cphy_3781 4633787 - 4635553 + | ABC transporter related Cphy_3782 4635540 - 4637324 + | ABC transporter related Cphy_3783 4637694 - 4638797 + | cell envelope-related transcriptional attenuator TERM 5167 4638865 - 4638842 - T 86 -3.8 -5.75599 | opp_overlap 4638842 TAAACCATAAAAAAA GATGATTCCT ATTT AGGTTTCATC TCTTTTTTATGTGTA TERM 5168 4638873 - 4638909 + T 100 -12.5 -5.44119 | opp_overlap 4638884, overlap 4638877 4638878 GTTTCATCTCTTTTT TATGTGTAAAATTCCGC CGG GCGGAATTTTACGTTTA TTTTTTTACGATGGG TERM 5169 4638877 - 4638905 + T 100 -15.5 -5.20328 | opp_overlap 4638884, overlap 4638873 4638878 CATCTCTTTTTTATG TGTAAAATTCCGC CGG GCGGAATTTTACG TTTATTTTTTTACGA TERM 5170 4638878 - 4638904 + T 100 -16.8 -3.7057 | opp_overlap 4638884, overlap 4638877 4638873 ATCTCTTTTTTATGT GTAAAATTCCGC CGG GCGGAATTTTAC GTTTATTTTTTTACG TERM 5171 4638898 - 4638884 - T 90 -10 -4.11216 | opp_overlap 4638878 4638877 4638873 TTTTTATGTGTAAAA TTCCGC CGG GCGGAA TTTTACGTTTATTTT Cphy_3784 4639193 - 4638930 - | hypothetical protein TERM 5172 4639318 - 4639294 - H 71 -8.8 -2.83566 | opp_overlap 4639299, overlap 4639285 4639293 4639297 ATATTATACTTAAAG TAATATGACA TCCTG TGTCATATTA AAATTATCTTTTTAC TERM 5173 4639942 - 4639957 + G 70 -3.2 -5.02357 | opp_overlap 4639932, overlap 4639932 4639944 ATAATCATTGATGGA GACCAA TGTT TTGGAC TTTTCTTTGATTATC Cphy_3785 4639618 - 4641696 + | Alpha-glucosidase TERM 5174 4641813 - 4641777 - T 83 -6.8 -4.77896 | gap 2, opp_overlap 4641777 TAATGAACTCAAAAA GGTCCTTGAAAACTGCTA ATA TA-CAGT-TTCAAGGGCC TTTTTAATAAGTGAT TERM 5175 4641777 - 4641813 + T 93 -9 -4.75372 | gap 2, opp_overlap 4641777 TAATGAACTCAAAAA GGTCCTTGAAAACTGCTA ATA TA-CAGT-TTCAAGGGCC TTTTTAATAAGTGAT Cphy_3786 4641994 - 4641842 - | rubredoxin-type Fe(Cys)4 protein TERM 5176 4642186 - 4642155 - H 78 -9 -3.45321 | opp_overlap 4642152, overlap 4642181 ATGTATAATGCAGAA TTTAGATTTCTTAA TAAC TTATGAAATCTAAA TAGCATTTTGACACT TERM 5177 4642915 - 4642903 - g 70 -3.3 -5.03747 | opp_overlap 4642904, overlap 4642904 AAATGGCTGAAAAAA CTGGC TGT GCCAT CATTCCGGTAGCAAT Cphy_3787 4642383 - 4643114 + | 1-acyl-sn-glycerol-3-phosphate acyltransferase Cphy_3788 4643248 - 4643703 + | hypothetical protein Cphy_3789 4644391 - 4643963 - | hypothetical protein TERM 5178 4644163 - 4644178 + g 81 -4.6 -5.28481 | opp_overlap 4644162, overlap 4644163 GTTCGAATACCATAT GGGAAG CTGC CTCCCC TTTTTTGGTTAACTC Cphy_3790 4645233 - 4644421 - | glutamate racemase Cphy_3791 4646313 - 4645252 - | D-alanine--D-alanine ligase TERM 5179 4646385 - 4646399 + H 76 -7.2 -4.21351 | AATCATTTAATTATC GTATGA AAT TCATAC TTTATTAAAATGTTT Cphy_3792 4646742 - 4647464 + | stage II sporulation protein R Cphy_3793 4647589 - 4648464 + | 4-diphosphocytidyl-2C-methyl-D-erythritol kinase TERM 5180 4648535 - 4648480 - f 100 -9.4 -5.24531 | gap 1, opp_overlap 4648480 ATCTTTTATAAAAAA GAACAAATTGTATCA-TCACTAAGATT CAT AACCTTAGAAAATGATGCAACTTGTTC TTTTTTGTTCATGAC TERM 5181 4648480 - 4648535 + F 82 -5 -5.5112 | gap 1, opp_overlap 4648480 ATCTTTTATAAAAAA GAACAAATTGTATCAT-CACTAAGATT CAT AACCTTAGAAAATGATGCAACTTGTTC TTTTTTGTTCATGAC Cphy_3794 4648777 - 4650348 + | peptidoglycan-binding LysM TERM 5182 4650439 - 4650408 - T 100 -15.4 -5.48163 | opp_overlap 4650408 AAATAAATGAAAAAA GAGAGTGTAATTAG ATAC CTAACTACACTCTC TTCTTAAAGTCAAAG TERM 5183 4650408 - 4650439 + T 100 -13.2 -3.65046 | opp_overlap 4650408 AAATAAATGAAAAAA GAGAGTGTAATTAG ATAC CTAACTACACTCTC TTCTTAAAGTCAAAG Cphy_3795 4651096 - 4650524 - | hypothetical protein TERM 5184 4651155 - 4651170 + r 80 -7.6 -4.30793 | AAGACATTAGTTACC GACCTA TACT TAGGTC TTATTTCTTATATCG Cphy_3796 4652070 - 4651348 - | phosphotransferase domain-containing protein Cphy_3797 4652398 - 4652051 - | hypothetical protein Cphy_3798 4653702 - 4652419 - | Fe-S cluster domain-containing protein TERM 5185 4653648 - 4653658 + g 70 -5.4 -4.37502 | TGCAATTGATACAGC CCTT ACA AAGG TTTTCATCTAATCGT Cphy_3799 4654264 - 4653842 - | putative anti-sigma regulatory factor, serine/threonine protein kinase TERM 5186 4653895 - 4653913 + g 76 -3.2 -5.32699 | CCAATATGGTATTTA TACTCA TTTCATC TGAGTA TTTTTTCATATTTGG Cphy_3800 4654611 - 4654261 - | DRTGG domain-containing protein TERM 5187 4654687 - 4654703 + H 85 -6.7 -5.05712 | opp_overlap 4654686 TAAAACTGTCAATAT TGTATAA ATT TTATACA TTTTTACTTATTTAT Cphy_3801 4655038 - 4655532 + | NADH dehydrogenase (ubiquinone) 24 kDa subunit Cphy_3802 4655605 - 4656162 + | histidine kinase Cphy_3803 4656224 - 4656595 + | hypothetical protein Cphy_3804 4656611 - 4658398 + | NADH dehydrogenase (quinone) TERM 5188 4659851 - 4659835 - g 73 -7.3 -4.02571 | opp_overlap 4659835, overlap 4659824 4659832 CAAGGCATCAAAGAA GCAACCT TCC AAGTTGC TGGTATGGATGTCAA Cphy_3805 4658458 - 4660206 + | hydrogenase, Fe-only TERM 5189 4660265 - 4660220 - T 76 -3.5 -5.43621 | opp_overlap 4660220 4660253 AGAAACTAGAAAAAA TAAAAAATGTCTCTGTG CAGGTATTAAAC CGCTGAGACATTTTTTA TTTTAATAAGAAAAG Cphy_3806 4660784 - 4660386 - | hypothetical protein TERM 5190 4660683 - 4660666 - G 73 -3.5 -5.07567 | gap 1, opp_overlap 4660666, overlap 4660669 TGATATCTTAAAAAA TAG-TCAG TCT CTGAACTA TCTTTATCGCTTATA Cphy_3807 4661695 - 4660862 - | hypothetical protein Cphy_3808 4662448 - 4661876 - | putative lipoprotein signal peptidase Cphy_3809 4662908 - 4662474 - | GCN5-related N-acetyltransferase Cphy_3810 4663300 - 4664256 + | ATPase TERM 5191 4664575 - 4664593 + G 80 -9 -3.85698 | opp_overlap 4664575 4664574 TAGATTGAGAGTAAC GTTATCTT TTG AAGATAAC TTTGTAACCGAAGGA Cphy_3811 4664480 - 4665622 + | hypothetical protein Cphy_3812 4665912 - 4666826 + | hypothetical protein Cphy_3813 4666907 - 4667326 + | hypothetical protein TERM 5192 4667361 - 4667336 - f 100 -11.3 -5.3798 | opp_overlap 4667336 CAATAATAAGAAAAA GCAAAGCATTA CAAT CAATGCTTTGC TTTTTTATTCATGAC TERM 5193 4667336 - 4667361 + F 100 -10.6 -5.5112 | opp_overlap 4667336 CAATAATAAGAAAAA GCAAAGCATT ACAATC AATGCTTTGC TTTTTTATTCATGAC TERM 5194 4667480 - 4667464 - f 74 -5.9 -4.71307 | TAAAAACTAAATAAA CCACATA TAG TATATGG ACGGTAATTTATTTA Cphy_3814 4667936 - 4668178 + | hypothetical protein Cphy_3815 4668370 - 4668768 + | ferric uptake regulator family protein TERM 5195 4668875 - 4668845 - f 88 -3.3 -5.93252 | gap 1, opp_overlap 4668845 TGTAAAAATAAAAAA CCAGGA-GCTTTTC TATA GGAAAGTATCCTGG TTTTTTTTACGTTAA TERM 5196 4668845 - 4668875 + F 100 -7.7 -5.86332 | gap 1, opp_overlap 4668845 TGTAAAAATAAAAAA CCAGGA-GCTTTTC TATA GGAAAGTATCCTGG TTTTTTTTACGTTAA TERM 5197 4668966 - 4668991 + F 71 -5.5 -4.70353 | CATATATATTAATCT GCCTTGATACA TATA TATATTAAGGC TTTTAGTTTCTTATA Cphy_3816 4669320 - 4669862 + | rubrerythrin TERM 5198 4669964 - 4670009 + F 100 -23 -4.01184 | opp_overlap 4669967 4669971, overlap 4669967 4669971 TCTATACTCCCCTAA GAAGAAAGGCAAGACGTCTA CCCCCA TAGATGTCTTGCCTTTCTTC TTTATAATACTATAT TERM 5199 4669967 - 4670006 + F 100 -18.9 -4.12254 | opp_overlap 4669967 4669971, overlap 4669964 4669971 ATACTCCCCTAAGAA GAAAGGCAAGACGTCTA CCCCCA TAGATGTCTTGCCTTTC TTCTTTATAATACTA TERM 5200 4670006 - 4669967 - f 100 -17.4 -3.62224 | opp_overlap 4669964 4669967 4669971, overlap 4669971 ATACTCCCCTAAGAA GAAAGGCAAGACGTCTAC CCCC ATAGATGTCTTGCCTTTC TTCTTTATAATACTA TERM 5201 4670002 - 4669971 - f 100 -12.4 -4.44667 | opp_overlap 4669967 4669964 4669971, overlap 4669967 TCCCCTAAGAAGAAA GGCAAGACGTCTAC CCCC ATAGATGTCTTGCC TTTCTTCTTTATAAT TERM 5202 4669971 - 4670002 + F 100 -13.9 -4.63952 | opp_overlap 4669971 4669967, overlap 4669967 4669964 TCCCCTAAGAAGAAA GGCAAGACGTCTA CCCCCA TAGATGTCTTGCC TTTCTTCTTTATAAT TERM 5203 4670416 - 4670404 - g 74 -2.6 -5.31877 | ATGCATTACAAAAAA GAGG AATTG CCCC TAGGAATCTAACATT Cphy_3817 4670157 - 4670885 + | HAD family hydrolase TERM 5204 4670998 - 4671025 + T 100 -7.9 -5.55769 | gap 1, opp_overlap 4670998 TTACCACACAAAAAA GAGAACT-AGGA CTCAA TCCTTAGTTCTC TTTTTTCTTATAAAC TERM 5205 4671025 - 4670998 - T 100 -8.6 -5.39721 | gap 1, opp_overlap 4670998 TTACCACACAAAAAA GAGAACTA-GGAC TCA ATCCTTAGTTCTC TTTTTTCTTATAAAC Cphy_3818 4672757 - 4671174 - | DEAD/DEAH box helicase domain-containing protein Cphy_3819 4675740 - 4673155 - | ATP-dependent chaperone ClpB Cphy_3820 4677741 - 4676284 - | PGAP1 family protein Cphy_3821 4678865 - 4677960 - | band 7 protein TERM 5206 4678307 - 4678325 + g 75 -5.3 -4.87133 | opp_overlap 4678323 CTGCTGTTTTGTTAT CACTTGG TAAAT CTAAGTG TTTTGTTTCAACACT Cphy_3822 4679802 - 4678867 - | HflK protein Cphy_3823 4681890 - 4680283 - | hypothetical protein TERM 5207 4680516 - 4680532 + g 78 -8.7 -3.68073 | overlap 4680517 AACTATGATTACCAT TGGAGGA ATT TCCTCCG TTATTGGATCCACTG TERM 5208 4680517 - 4680531 + g 75 -10 -2.80522 | overlap 4680516 ACTATGATTACCATT GGAGGA ATT TCCTCC GTTATTGGATCCACT TERM 5209 4681923 - 4681933 + r 71 -6.8 -4.12901 | opp_overlap 4681923 4681922 TCTAGAAACAAAATT CTGC TGT GCAG TTTATGTAGCTTTTG TERM 5210 4681963 - 4681985 + r 100 -16.4 -3.4759 | opp_overlap 4681963 GCATAAATTCAAAAA GGTGTGCCTA ATC TAGGCACACC TTCATTATAATGGAT TERM 5211 4681985 - 4681963 - R 100 -16.4 -4.84529 | opp_overlap 4681963 GCATAAATTCAAAAA GGTGTGCCTA ATC TAGGCACACC TTCATTATAATGGAT Cphy_3824 4683078 - 4682035 - | CotS family spore coat protein TERM 5212 4682115 - 4682130 + g 85 -4 -5.68489 | gap 1, overlap 4682117 4682118 GTTTTTGAACATTTT TCTGTGG TAT CCAC-GA TTTTTTATTATTGTA Cphy_3825 4684028 - 4683234 - | hypothetical protein Cphy_3826 4684494 - 4684021 - | hypothetical protein TERM 5213 4684118 - 4684102 - G 76 -5.9 -4.56629 | GATAATAGCAGAAAA GTCTTGA ATA TCAAAAC CCAAAAATACTTCAT TERM 5214 4684743 - 4684765 + r 71 -7.8 -3.43654 | overlap 4684762 TGTCTAGCTATTCCC GTCAGTTTTA TTT TGAAACTGGC TTGTAGCTATCTTTA Cphy_3827 4686110 - 4684731 - | polynucleotide adenylyltransferase/metal dependent phosphohydrolase Cphy_3828 4687300 - 4686173 - | GDSL family lipase TERM 5215 4687653 - 4687643 - H 71 -5.4 -4.73614 | CATGATGAAAAGAAA GGAA AAC TTCC ATGTATCAGTATGAA Cphy_3829 4687654 - 4688367 + | GntR domain-containing protein TERM 5216 4690575 - 4690560 - g 79 -4.7 -5.20222 | ATGAAAGAAAGAAAA TCTGG AAAAAG CCAGA ACCTAAGTATCAAAA Cphy_3830 4688933 - 4690654 + | dihydroxy-acid dehydratase Cphy_3831 4690700 - 4692124 + | gluconate transporter TERM 5217 4692205 - 4692163 - T 79 -8.8 -3.86194 | gap 1, opp_overlap 4692164 4692174, overlap 4692164 4692174 AAGCTTGTTGATAAA TTAT-GAAAAAAGGATGAG ACTAGG CTCATCCTTTTTTCTATAT TACCACTATATTTAT TERM 5218 4692164 - 4692202 + T 87 -11.4 -3.06087 | gap 1, opp_overlap 4692163 4692164 4692174, overlap 4692174 AGCTTGTTGATAAAT TATGAAAAAAGGATGAG ACTAGG CTCATCCTTTTTTC-TA TATTACCACTATATT TERM 5219 4692204 - 4692164 - T 90 -12.3 -2.91395 | gap 1, opp_overlap 4692164 4692174, overlap 4692163 4692174 AGCTTGTTGATAAAT TAT-GAAAAAAGGATGAG ACTAGG CTCATCCTTTTTTCTATA TTACCACTATATTTA TERM 5220 4692174 - 4692193 + T 100 -7.9 -5.47431 | opp_overlap 4692164 4692163 4692174, overlap 4692164 TAAATTATGAAAAAA GGATGAG ACTAGG CTCATCC TTTTTTCTATATTAC TERM 5221 4692193 - 4692174 - T 91 -7.9 -5.243 | opp_overlap 4692174 4692164, overlap 4692164 4692163 TAAATTATGAAAAAA GGATGAG ACTAGG CTCATCC TTTTTTCTATATTAC Cphy_3832 4695499 - 4692224 - | isoleucyl-tRNA synthetase TERM 5222 4695662 - 4695637 - H 100 -11.2 -5.65513 | opp_overlap 4695656, overlap 4695656 CATGAATTAAAAAAA GCTCCCATCC AAAACA GGATGAGAGC AGGAATGCTTCATTA TERM 5223 4695698 - 4695710 + H 71 -7.7 -3.46913 | CCTATTTCACGTACG CAGAC TAA GTCTG TTATACATTATCTAT Cphy_3833 4696106 - 4696300 + | hypothetical protein Cphy_3834 4697796 - 4696423 - | methylcitrate synthase TERM 5224 4698048 - 4698091 + r 82 -9.9 -3.27902 | opp_overlap 4698048, overlap 4698046 4698044 TATTATAAGCAAAAA GACTGATAGTGTTAGT-GCAT AAAT ATGCGACTATC-CTATCAGTC TATCTTATTCCATAG TERM 5225 4698091 - 4698048 - R 100 -9.9 -4.94972 | opp_overlap 4698048 4698046 4698044 TATTATAAGCAAAAA GACTGATAGTGTTAGT-GCAT AAAT ATGCGACTATC-CTATCAGTC TATCTTATTCCATAG Cphy_3835 4698547 - 4698116 - | MarR family transcriptional regulator TERM 5226 4698676 - 4698639 - R 100 -14.5 -3.40522 | opp_overlap 4698609 4698639 4698643, overlap 4698641 4698645 ATTTTGTTACGATAA TATAAATTGTCTAGCTA TGTA TAGCTAGACAATCTACA TTCTATGATCTATTT TERM 5227 4698639 - 4698676 + r 86 -10.1 -3.60782 | opp_overlap 4698639 4698641 4698645, overlap 4698609 4698643 ATTTTGTTACGATAA TATAAATTGTCTAGCTA TGTA TAGCTAGACAATCTACA TTCTATGATCTATTT TERM 5228 4698674 - 4698641 - R 100 -14.9 -3.27475 | opp_overlap 4698639 4698643, overlap 4698639 4698645 TTTGTTACGATAATA TAAATTGTCTAGCTA TGTA TAGCTAGACAATCTA CATTCTATGATCTAT TERM 5229 4698643 - 4698672 + r 82 -10.9 -2.64318 | opp_overlap 4698641 4698639 4698645, overlap 4698639 TGTTACGATAATATA AATTGTCTAGCTA TGTA TAGCTAGACAATC TACATTCTATGATCT TERM 5230 4698670 - 4698645 - R 100 -13.5 -4.29304 | opp_overlap 4698643 4698639, overlap 4698641 4698639 TTACGATAATATAAA TTGTCTAGCTA TGTA TAGCTAGACAA TCTACATTCTATGAT TERM 5231 4698882 - 4698832 - R 93 -10.1 -4.23758 | gap 1, opp_overlap 4698849, overlap 4698843 ATTTGATATTTAAAA TAGAGGCAAAAGAAACAGAAAGAC TTTC ATCTTT-TGCTTCTTATACCTCTA TAGTAGTATTTTATC Cphy_3836 4700372 - 4698915 - | nicotinate phosphoribosyltransferase TERM 5232 4700411 - 4700441 + r 100 -14.2 -3.05463 | TCAAGTACAATTTTC TGCGAGTACTATGT ATC ATGTAGTACTCGCA TTACGTGAAACACGT TERM 5233 4700443 - 4700457 + r 72 -8.6 -3.10112 | opp_overlap 4700452 4700455, overlap 4700445 ATGTAGTACTCGCAT TACGTG AAA CACGTA TTACGTACATTACGT Cphy_3837 4701933 - 4700500 - | prolyl-tRNA synthetase TERM 5234 4702051 - 4702031 - R 100 -9.7 -6.11243 | overlap 4702050 ATTGAATAAAAAAAA GGCCCCTTA AAA CAAGGGACC GAAACTTCGGTGGTA Cphy_3838 4703430 - 4702396 - | sporulation integral membrane protein YtvI TERM 5235 4703389 - 4703332 - G 74 -2.5 -5.30616 | gap 5, opp_overlap 4703352, overlap 4703352 GTAGGCAAATAAAAA TGGGACAAACA--GC-G-GTA-ATAGGTAT TTC ATACCTATATACACAGCAATGATTGTCCCA GCAGTAAGAAGTAAC TERM 5236 4703687 - 4703669 - R 87 -7.6 -4.84673 | CTAAATAAGATAAAA TACTTTAT ATT ATAAAGTA ACCGATTCAAAAATA Cphy_3839 4704465 - 4703710 - | cytidylate kinase-like protein Cphy_3840 4705278 - 4704694 - | ABC transporter related Cphy_3841 4706224 - 4705364 - | binding-protein-dependent transport systems inner membrane component Cphy_3842 4707231 - 4706458 - | tryptophan synthase, alpha subunit TERM 5237 4706828 - 4706842 + g 73 -5.7 -4.71426 | opp_overlap 4706826 4706828 TGTAATTTACAAAGA GGAAG TAGCT CTTCC TTTTCTTCATAAGGA Cphy_3843 4708408 - 4707224 - | tryptophan synthase subunit beta Cphy_3844 4709099 - 4708443 - | phosphoribosylanthranilate isomerase TERM 5238 4709131 - 4709141 + r 74 -6.8 -4.24342 | ACTGCACTGTTTTTT CCCA CCA TGGG TTTATTGCTACAACA Cphy_3845 4710021 - 4709206 - | indole-3-glycerol-phosphate synthase Cphy_3846 4711035 - 4710025 - | anthranilate phosphoribosyltransferase Cphy_3847 4711616 - 4711044 - | glutamine amidotransferase of anthranilate synthase Cphy_3848 4713079 - 4711613 - | anthranilate synthase component I TERM 5239 4713251 - 4713220 - R 71 -6.8 -4.08485 | gap 1, opp_overlap 4713229 4713245, overlap 4713215 4713228 4713243 TCTAGGTAAATGAAA TTCACTAAGGTGAAT GAA ATTCAC-TTGGTGAA TGAAATTCACCATTC TERM 5240 4713245 - 4713263 + r 83 -10.4 -3.05384 | opp_overlap 4713220 4713228 4713243 TGAATGAAATTCACT TGGTGAAT GAA ATTCACCA TTCGATCCCCACAAG TERM 5241 4713376 - 4713347 - R 100 -10.8 -6.02919 | overlap 4713370 CTATAAATAAAAAAA GCTTCTGCCCCT AGACTA AGGGACAAAAGC TTAAAACTTCTGCGA Cphy_3849 4714179 - 4713700 - | hypothetical protein Cphy_3850 4715741 - 4714233 - | flagellin domain-containing protein Cphy_3851 4719172 - 4715762 - | hypothetical protein TERM 5242 4716363 - 4716340 - G 73 -7.4 -4.17048 | CTGCTTCTAAAAGAA CCTCATCGGA AGCT TCCGAAAAGG AATGGTAAAACTCCT Cphy_3852 4719604 - 4721364 + | hypothetical protein Cphy_3853 4721888 - 4723555 + | phosphoenolpyruvate carboxykinase (ATP) TERM 5243 4723662 - 4723642 - f 76 -9.7 -3.13368 | overlap 4723640 ATATTAAAACAACGA TTGCGCCCA TGC TGGGTGCAA AAAATAGCGCGCTAT TERM 5244 4723698 - 4723667 - f 100 -13.2 -5.00616 | gap 1, opp_overlap 4723667 GCTGGGTGCAAAAAA TAGCGCGCTATC-CT AAT AGTAATAGCGCGCTA TTTTTTGTATTTTTT TERM 5245 4723667 - 4723698 + F 100 -11 -5.72118 | gap 1, opp_overlap 4723667 GCTGGGTGCAAAAAA TAGCGCGCTA-TCCT AAT AGTAATAGCGCGCTA TTTTTTGTATTTTTT TERM 5246 4724003 - 4723971 - f 87 -9.9 -3.86346 | opp_overlap 4723980, overlap 4723936 4723974 4723980 TTAGCTCCTGATAAA CAAGAAGAAGTACGC TTT GCGAACTTTTCCTTG CCAAGAACTATATTT TERM 5247 4725408 - 4725380 - g 72 -3.9 -4.96848 | opp_overlap 4725382, overlap 4725382 TTCTCCAGATAAAAA TAGCATCGTTCAT GGT ATAAAAGATGCTT GTTCTGATGATGCAT TERM 5248 4725406 - 4725382 - g 70 -6.5 -4.11141 | opp_overlap 4725382, overlap 4725380 CTCCAGATAAAAATA GCATCGTTCAT GGT ATAAAAGATGC TTGTTCTGATGATGC Cphy_3854 4724145 - 4726538 + | glycosyltransferase 36 TERM 5249 4726596 - 4726561 - f 86 -11.3 -2.87132 | gap 1, overlap 4726564 TTGTTCTTTTACACA GAAGTTTGTGCCTGCG TAATC CTC-GGCACAAACTTC CGGCCTACTACTAGG TERM 5250 4726593 - 4726564 - f 70 -7.2 -3.58726 | gap 1, overlap 4726561 TTCTTTTACACAGAA GTTTGTGCCTGCG TAATC CTC-GGCACAAAC TTCCGGCCTACTACT TERM 5251 4726672 - 4726634 - f 83 -10.5 -3.06162 | opp_overlap 4726637, overlap 4726637 GATTTTATGTGAAGA GAATTTCTTAGGTACCA AAAGA TGCTGCCTAAGAAATTC TAAAACTTCACACTG TERM 5252 4726637 - 4726669 + F 74 -8.6 -3.33261 | opp_overlap 4726637 4726634 TTTATGTGAAGAGAA TTTCTTAGGTACCA AAAGA TGCTGCCTAAGAAA TTCTAAAACTTCACA Cphy_3855 4726828 - 4728252 + | phosphomannomutase TERM 5253 4728496 - 4728535 + T 95 -10.3 -4.2651 | opp_overlap 4728496 4728501, overlap 4728501 CGTACCATGATAAAT GAAAAGCAGAAATTCTA TCCGTT TGGAATTTCTGCTTTTA TTATTTTGGCTCTTT TERM 5254 4728535 - 4728496 - T 70 -8.1 -2.99273 | opp_overlap 4728496 4728501, overlap 4728501 CGTACCATGATAAAT GAAAAGCAGAAATTCTA TCCGTT TGGAATTTCTGCTTTTA TTATTTTGGCTCTTT TERM 5255 4728530 - 4728501 - T 85 -8 -4.63479 | opp_overlap 4728496 4728501, overlap 4728496 CATGATAAATGAAAA GCAGAAATTCTA TCCGTT TGGAATTTCTGC TTTTATTATTTTGGC TERM 5256 4728501 - 4728530 + T 100 -10.2 -5.093 | opp_overlap 4728501 4728496, overlap 4728496 CATGATAAATGAAAA GCAGAAATTCTA TCCGTT TGGAATTTCTGC TTTTATTATTTTGGC TERM 5257 4728552 - 4728596 + T 93 -11.5 -3.63589 | overlap 4728556 4728560 TATTTTGGCTCTTTG TCAAGTCTTGGGGTGGGATTC ACG GAATCCCGCTCCATTACTTCA TTTAGAGCTATTTTA TERM 5258 4728556 - 4728592 + T 91 -12.3 -3.52472 | overlap 4728552 4728560 TTGGCTCTTTGTCAA GTCTTGGGGTGGGATTC ACG GAATCCCGCTCCATTAC TTCATTTAGAGCTAT TERM 5259 4728560 - 4728588 + T 100 -16.1 -3.5013 | overlap 4728556 4728552 CTCTTTGTCAAGTCT TGGGGTGGGATTC ACG GAATCCCGCTCCA TTACTTCATTTAGAG Cphy_3856 4729857 - 4728682 - | transposase IS204/IS1001/IS1096/IS1165 family protein TERM 5260 4728866 - 4728879 + g 78 -6.7 -4.69464 | opp_overlap 4728865 4728866, overlap 4728876 GCACAGTTCTCAAAT TCAGG TATT CCTGA TTTTTCAGCTGTTTT Cphy_3857 4730021 - 4731766 + | signal transduction histidine kinase, LytS TERM 5261 4732602 - 4732580 - g 71 -8.6 -3.14961 | overlap 4732583 ATCACCATCAACACA TAATGTTCTT CCA AAGAACACTA CTGATACTCAGGGAC TERM 5262 4732599 - 4732583 - g 74 -8.1 -3.71124 | overlap 4732580 ACCATCAACACATAA TGTTCTT CCA AAGAACA CTACTGATACTCAGG Cphy_3858 4731867 - 4733216 + | extracellular solute-binding protein TERM 5263 4733304 - 4733331 + F 100 -12.1 -4.17048 | opp_overlap 4733301 4733304 AAAATAAAAAATTGA GGCCGGAGAAA ATGCAC TTTCTCTGGCC TTCTTTTAAGAGAGG TERM 5264 4733331 - 4733304 - f 83 -10.6 -3.03203 | opp_overlap 4733304, overlap 4733301 AAAATAAAAAATTGA GGCCGGAGAAAA TGCA CTTTCTCTGGCC TTCTTTTAAGAGAGG Cphy_3859 4733354 - 4734235 + | binding-protein-dependent transport systems inner membrane component Cphy_3860 4734248 - 4735123 + | binding-protein-dependent transport systems inner membrane component TERM 5265 4735113 - 4735123 + F 70 -4 -4.95758 | opp_overlap 4735098 TGACTGCAGGTGCGG TCAA GGG TTGA TTTTTGTGGTATAAT TERM 5266 4735650 - 4735660 + G 74 -8.2 -3.72229 | overlap 4735647 CGCGATTTTGATTAT GCCC AAC GGGC TATTTGTCTTGGTGT Cphy_3861 4735380 - 4736159 + | two component AraC family transcriptional regulator TERM 5267 4736300 - 4736280 - f 100 -11.2 -5.27335 | opp_overlap 4736280 TTGTTGAAAGAAAAA GGCTGTGA CCCTC TCACAGCC TTTTTTTGATTGACG TERM 5268 4736280 - 4736300 + F 100 -11.2 -5.63103 | opp_overlap 4736280 TTGTTGAAAGAAAAA GGCTGTGA CCCTC TCACAGCC TTTTTTTGATTGACG TERM 5269 4736472 - 4736434 - f 100 -16.2 -3.86015 | opp_overlap 4736440, overlap 4736438 4736440 TATCCGCTGGAGAAA GAAAGAGAGCATCAGCCC CGA AAGCTGATGCTCTTTTTC ACGTGTCTTAACTGA TERM 5270 4736468 - 4736438 - f 100 -11.2 -4.55295 | opp_overlap 4736440, overlap 4736434 4736440 CGCTGGAGAAAGAAA GAGAGCATCAGCCC CGA AAGCTGATGCTCTT TTTCACGTGTCTTAA TERM 5271 4736440 - 4736466 + F 100 -12.4 -4.6644 | opp_overlap 4736438 4736434 4736440 CTGGAGAAAGAAAGA GAGCATCAGC CCCGAAA GCTGATGCTC TTTTTCACGTGTCTT TERM 5272 4736466 - 4736440 - f 100 -13.8 -3.88703 | opp_overlap 4736440, overlap 4736438 4736434 CTGGAGAAAGAAAGA GAGCATCAGCCC CGA AAGCTGATGCTC TTTTTCACGTGTCTT TERM 5273 4739306 - 4739318 + G 88 -10.5 -3.8572 | opp_overlap 4739305 4739303 4739306 TTTTACATACAATAG CGCGG ACA CCGCG TTTAGTAATCTTCTA TERM 5274 4739318 - 4739306 - g 76 -10.5 -2.61997 | opp_overlap 4739306, overlap 4739305 4739303 TTTTACATACAATAG CGCGG ACA CCGCG TTTAGTAATCTTCTA Cphy_3862 4736925 - 4744298 + | endo-1,4-beta-xylanase TERM 5275 4744322 - 4744346 + T 100 -10.1 -5.58454 | opp_overlap 4744322 TTACTGTCATAAAAA GAAGTACGC AAACGAA GCGTACTTC TTTTTTTCATATCAA TERM 5276 4744346 - 4744322 - T 100 -10.1 -4.84359 | opp_overlap 4744322 TTACTGTCATAAAAA GAAGTACGC AAACGAA GCGTACTTC TTTTTTTCATATCAA Cphy_3863 4745365 - 4744376 - | ABC transporter related Cphy_3864 4746149 - 4745367 - | hypothetical protein Cphy_3865 4747179 - 4746361 - | hypothetical protein TERM 5277 4746593 - 4746583 - G 81 -5.4 -5.14965 | AGCCTCAGGAAAAAA TACC AAT GGTA TGAAGGCTCCGGAAA TERM 5278 4747093 - 4747120 + g 80 -10.7 -3.35798 | gap 1, opp_overlap 4747089 4747092 4747097, overlap 4747097 4747102 AAAAATTGAAACCAT GGAATGG-GTGC GGTAG GCACTCCATTCC TTATAGGTAACCAGT Cphy_3866 4748348 - 4747182 - | beta-lactamase TERM 5279 4748626 - 4748683 + r 80 -7.8 -4.28049 | gap 1, opp_overlap 4748632, overlap 4748632 TATATAATTAAGCAT C-AAAAAGGAGGGTCGCAAAATAGCTG ATAAA TAGCTATGGGGCGGCCCTCCTTTGTAG TTTTGAGATTTTCGA TERM 5280 4748632 - 4748676 + r 100 -11.4 -4.208 | opp_overlap 4748632, overlap 4748626 ATTAAGCATCAAAAA GGAGGGTCGCAAAATAGCTG ATAAA TAGCTATGGGGCGGCCCTCC TTTGTAGTTTTGAGA TERM 5281 4748676 - 4748632 - R 93 -8.5 -4.81685 | opp_overlap 4748632 4748626 ATTAAGCATCAAAAA GGAGGGTCGCAAAATAGCT GATAAAT AGCTATGGGGCGGCCCTCC TTTGTAGTTTTGAGA Cphy_3867 4750540 - 4748822 - | methyl-accepting chemotaxis sensory transducer Cphy_3868 4751193 - 4750732 - | 5-nitroimidazole antibiotic resistance protein TERM 5282 4751372 - 4751348 - R 100 -10.1 -5.07567 | opp_overlap 4751348 TTATATCGCAAAAAA GAAGTACGC TTCGCTT GCGTACTTC TTTTTTGATTGTATG TERM 5283 4751348 - 4751372 + r 100 -10.1 -5.35354 | opp_overlap 4751348 TTATATCGCAAAAAA GAAGTACGC TTCGCTT GCGTACTTC TTTTTTGATTGTATG Cphy_3869 4755689 - 4751394 - | fibronectin type III domain-containing protein TERM 5284 4751464 - 4751474 + g 73 -6.8 -4.19506 | opp_overlap 4751455, overlap 4751458 ATCCAATCTGTTTCC GCAG AAA CTGC TTTTACCGTTGCAGT TERM 5285 4753154 - 4753165 + g 70 -3 -5.09204 | CATCAATACCACGTT CAAT CTTA ATTG TTTTTGTTAAGCTAT TERM 5286 4755860 - 4755831 - R 74 -9.5 -2.60326 | opp_overlap 4755832 4755839, overlap 4755828 4755830 4755839 GAAAAAATAAATCAT TTCCAAAATGTAA GTGC TTACATTTTGGAT TATATAAAATCTAAT TERM 5287 4755832 - 4755859 + r 100 -13 -3.51365 | opp_overlap 4755828 4755831 4755830 4755839, overlap 4755839 AAAAAATAAATCATT TCCAAAATGTAA GTGC TTACATTTTGGA TTATATAAAATCTAA TERM 5288 4756095 - 4756051 - R 84 -3.7 -5.72622 | gap 1, opp_overlap 4756073 TCCATAAATAAAAAA GAAGCTCTAC-GATTCCAAC TCTTTC GTTAGATTCTATCGAGCTTC CTTGCTATAAATATA Cphy_3870 4757225 - 4756161 - | hypothetical protein Cphy_3871 4757670 - 4757422 - | hypothetical protein TERM 5289 4757791 - 4757745 - R 88 -6.9 -5.27206 | gap 2, opp_overlap 4757746, overlap 4757746 TATACAGAATAAAAA TGGCTTTTGAAAGCTGAAATGAA TTC CTCATTCC--CTTTCAAAAGCCT GATTTACGCTTTTTT TERM 5290 4757790 - 4757746 - R 87 -10.4 -3.74697 | gap 2, opp_overlap 4757746, overlap 4757745 ATACAGAATAAAAAT GGCTTTTGAAAGCTGAAATGAA TTC CTCATTCC--CTTTCAAAAGCC TGATTTACGCTTTTT Cphy_3872 4758614 - 4757925 - | two component transcriptional regulator TERM 5291 4758668 - 4758710 + r 80 -10.3 -2.66481 | gap 1, opp_overlap 4758668 4758671, overlap 4758671 4758679 4758707 TTTATTTTCAATTCA GAAGAA-AAAAATGGAATCT CAAT GGATTTCATTTTTATTCTTC TGGTGTGAAGTTTTA TERM 5292 4758679 - 4758698 + r 76 -3.6 -5.34365 | opp_overlap 4758671 4758668, overlap 4758671 4758668 TTCAGAAGAAAAAAA TGGAATCT CAAT GGATTTCA TTTTTATTCTTCTGG Cphy_3873 4760314 - 4758773 - | integral membrane sensor signal transduction histidine kinase TERM 5293 4760081 - 4760103 + g 71 -4.8 -4.56314 | TAAATCCTCTAATTC CCAAGGTGAT TTC ATTGCCTGGG TTTTAATTCTATTAA Cphy_3874 4761917 - 4760727 - | methionine adenosyltransferase TERM 5294 4762041 - 4762026 - R 100 -10.4 -5.64274 | opp_overlap 4762026 CTATCCACAAAAAAA GTCCGC ATAA GCGGAC TTGTTTATTAAAAAC TERM 5295 4762026 - 4762041 + r 95 -10.4 -4.20367 | opp_overlap 4762026 CTATCCACAAAAAAA GTCCGC ATAA GCGGAC TTGTTTATTAAAAAC Cphy_3875 4762492 - 4762298 - | heavy metal transport/detoxification protein Cphy_3876 4762910 - 4762599 - | hypothetical protein Cphy_3877 4765193 - 4762911 - | copper-translocating P-type ATPase TERM 5296 4763604 - 4763616 + g 73 -6.3 -4.43477 | AGCATCTTTCCCATA GCTTA GCA TAAGC TTTTCATTACCTACA TERM 5297 4765388 - 4765402 + H 81 -10 -3.08467 | opp_overlap 4765374 4765390, overlap 4765381 4765390 ATTATTATTTTTACA TACCCC CAT GGGGTA TATATCATTTATAAC TERM 5298 4765390 - 4765400 + H 70 -8.2 -3.09415 | opp_overlap 4765390 4765374, overlap 4765388 4765381 TATTATTTTTACATA CCCC CAT GGGG TATATATCATTTATA Cphy_3878 4765822 - 4766910 + | metal dependent phosphohydrolase TERM 5299 4766986 - 4767019 + T 100 -11.9 -5.1764 | opp_overlap 4766986 AATTTAAATAAAAAA GCAGAGAATTCTAAG TTTA TTAAGAATTCTCTGC TTTTTCTATTCTATA TERM 5300 4767019 - 4766986 - T 100 -11.2 -5.67283 | opp_overlap 4766986 AATTTAAATAAAAAA GCAGAGAATTCTAA GTTTAT TAAGAATTCTCTGC TTTTTCTATTCTATA TERM 5301 4767156 - 4767130 - T 71 -8.2 -3.36803 | overlap 4767134 TAATGGCATGCATAA TAAAGATAAACT ATT AGCCTATCTTTA ATCTAGCTTTTCGAT Cphy_3879 4768441 - 4767143 - | UDP-N-acetylglucosamine 1-carboxyvinyltransferase Cphy_3880 4769235 - 4768723 - | shikimate kinase Cphy_3881 4769851 - 4769222 - | flavin reductase domain-containing protein TERM 5302 4769650 - 4769661 + g 70 -3 -5.2166 | opp_overlap 4769650 TGGTTAAATTAATGA CAAA TTCT TTTG TTTTTTCAATTATTG Cphy_3882 4770066 - 4770407 + | hypothetical protein Cphy_3883 4772596 - 4770533 - | hypothetical protein TERM 5303 4770657 - 4770684 + g 95 -7.8 -5.30448 | opp_overlap 4770656 4770659 ATTTGATTAAGATAT GAGAAAACTTCT GAAA GGATGTTTTCTC TTTTTATCTTTATTT TERM 5304 4771247 - 4771271 + g 83 -7.3 -4.81212 | opp_overlap 4771250, overlap 4771250 TCGCATAAAATTCCC AAATATTTCAC TTA GTGAAATATTC TTTTCTTCTAATAAA TERM 5305 4771250 - 4771268 + g 90 -9 -4.5028 | opp_overlap 4771250, overlap 4771247 CATAAAATTCCCAAA TATTTCAC TTA GTGAAATA TTCTTTTCTTCTAAT TERM 5306 4771268 - 4771250 - G 78 -9 -3.67737 | opp_overlap 4771250 4771247 CATAAAATTCCCAAA TATTTCAC TTA GTGAAATA TTCTTTTCTTCTAAT TERM 5307 4772054 - 4772042 - G 73 -6.2 -4.4891 | opp_overlap 4772042 TTCACCATTATAAAA GGCC AGAAG GGCC TTTGCGCGATCTACA Cphy_3884 4773486 - 4772764 - | ABC transporter related TERM 5308 4772964 - 4772976 + g 73 -6.3 -4.49337 | opp_overlap 4772963, overlap 4772948 TTAACTGTTCAATAG CAGAT AAA ATCTG TTTTCTCGATTGTAA TERM 5309 4773619 - 4773663 + r 93 -6.6 -5.37043 | opp_overlap 4773619 TTTTAGTGAAAAAAA TAAGCTGCTGCCAGACTA TTCTTACGT TAGTTTGACAACAGCTTA TTTTTTCTATCGAAT TERM 5310 4773663 - 4773619 - R 100 -8.8 -5.47218 | opp_overlap 4773619 TTTTAGTGAAAAAAA TAAGCTGCTGCCAGACTA TTCTTACGT TAGTTTGACAACAGCTTA TTTTTTCTATCGAAT Cphy_3885 4775520 - 4773691 - | flavocytochrome c Cphy_3886 4775742 - 4777484 + | integral membrane sensor signal transduction histidine kinase Cphy_3887 4777459 - 4778217 + | two component AraC family transcriptional regulator TERM 5311 4778242 - 4778286 + T 70 -3.8 -5.1167 | gap 1, opp_overlap 4778244 4778246, overlap 4778244 4778245 4778246 4778248 TTTTCATTTTTTAAA AACA-GAGCAGATAAAACACA TACA TATGTTTTATCTGCTCCTATC TTTTTATATTACATT TERM 5312 4778244 - 4778284 + T 70 -6.4 -4.17211 | gap 1, opp_overlap 4778244 4778246, overlap 4778242 4778245 4778246 4778248 TTCATTTTTTAAAAA CA-GAGCAGATAAAACACA TACA TATGTTTTATCTGCTCCTA TCTTTTTATATTACA TERM 5313 4778283 - 4778244 - T 100 -12.4 -4.58395 | opp_overlap 4778244 4778242 4778245 4778246 4778248, overlap 4778246 TTCATTTTTTAAAAA CAGAGCAGATAAAACACA TACA TATGTTTTATCTGCTCCT ATCTTTTTATATTAC TERM 5314 4778245 - 4778282 + T 93 -11.5 -3.66691 | opp_overlap 4778244 4778246, overlap 4778244 4778242 4778246 4778248 TCATTTTTTAAAAAC AGAGCAGATAAAACACA TACA TATGTTTTATCTGCTCC TATCTTTTTATATTA TERM 5315 4778246 - 4778281 + T 100 -15 -2.78388 | opp_overlap 4778244 4778246, overlap 4778245 4778244 4778242 4778248 CATTTTTTAAAAACA GAGCAGATAAAACACA TACA TATGTTTTATCTGCTC CTATCTTTTTATATT TERM 5316 4778281 - 4778246 - T 100 -17.2 -3.90762 | opp_overlap 4778246 4778245 4778244 4778242 4778248, overlap 4778244 CATTTTTTAAAAACA GAGCAGATAAAACACA TACA TATGTTTTATCTGCTC CTATCTTTTTATATT TERM 5317 4778248 - 4778279 + T 88 -11.8 -2.91239 | opp_overlap 4778246 4778244, overlap 4778246 4778245 4778244 4778242 TTTTTTAAAAACAGA GCAGATAAAACACA TACA TATGTTTTATCTGC TCCTATCTTTTTATA Cphy_3888 4782932 - 4778508 - | chromosome segregation ATPase-like protein TERM 5318 4780303 - 4780320 + g 86 -5.7 -5.33124 | TCTTGTGCTACTTGA GATAAAA GTTC TTTTATC TTTTGTTTTCTTGTT TERM 5319 4781365 - 4781378 + g 78 -5.3 -4.96468 | ACCTTCTTCTTTTCT CTAAG TGAA CTTAG TTTTGTTTCACTTTC TERM 5320 4782269 - 4782283 + g 71 -5 -4.68612 | TTAATAAATCCTCCA CTACTT TAC GAGTAG TTTTATAATTTGTTT Cphy_3889 4783659 - 4782919 - | hypothetical protein TERM 5321 4783727 - 4783765 + r 70 -8.3 -3.07233 | gap 1, opp_overlap 4783730, overlap 4783730 CAGTGTGAAGTTTTA GAATTTCTTAGGCAGCGT CTTT AGGC-GCCTTAGAAATTC TCTTCGCACTTGTAA Cphy_3890 4785378 - 4783831 - | hypothetical protein TERM 5322 4784290 - 4784280 - G 70 -6.8 -4.11216 | opp_overlap 4784279 CGTCCACTTCTAAAA CGGT TTC ACCG ACTTCTTCTTTTTGA TERM 5323 4785191 - 4785224 + g 70 -8.3 -3.34962 | gap 1, opp_overlap 4785191 4785190 4785212 4785219 4785221, overlap 4785218 4785220 4785221 CTCCTTTCATTAAAG TGGTTC-TCTTCGATA AAA TAACGAAGAAGAGCCA TTGTGACATATCCCA TERM 5324 4785220 - 4785253 + g 72 -7.6 -3.71745 | gap 1, opp_overlap 4785191 4785190 4785219 4785212 4785221, overlap 4785191 4785218 4785221 AAAATAACGAAGAAG AGCCATTG-TGACAT ATCCC ATGTCAACAATGGCG TATTTTCCATCCTTA TERM 5325 4785252 - 4785221 - G 87 -11.8 -3.53745 | gap 1, opp_overlap 4785191 4785220 4785218 4785221, overlap 4785191 4785190 4785219 4785212 AAATAACGAAGAAGA GCCATTG-TGACATA TCC CATGTCAACAATGGC GTATTTTCCATCCTT TERM 5326 4785221 - 4785252 + g 79 -11.1 -2.82324 | gap 1, opp_overlap 4785191 4785190 4785221 4785219 4785212, overlap 4785191 4785220 4785218 AAATAACGAAGAAGA GCCATTG-TGACAT ATCCC ATGTCAACAATGGC GTATTTTCCATCCTT TERM 5327 4785434 - 4785404 - R 85 -9 -4.02653 | overlap 4785427 AATTAACGCAAACAA CCCCAGCGATTACT CAG AAAAACCACTGGGG CAGTACATATTAAAG Cphy_3891 4787759 - 4785444 - | cyclic nucleotide-binding protein TERM 5328 4786740 - 4786751 + g 86 -4.4 -5.69262 | overlap 4786732 TTCAACTGCCTTAGA GAAG GCTA CTTC TTTTTCTTTTTCTAG TERM 5329 4787968 - 4787932 - R 90 -4.1 -6.04953 | gap 2, opp_overlap 4787938 ATATAAACAAAAAAA CCGATAT--AAAAAGTA AGCTA TACTTTTTCTATATCGG CATATTTCTTATTAT TERM 5330 4788309 - 4788299 - R 93 -6.8 -5.34365 | opp_overlap 4788299 TTATAACAATAAAAA GACC TAT GGTC TCATTGCTACCTTAT Cphy_3892 4789905 - 4788544 - | cell envelope-related transcriptional attenuator Cphy_3893 4790255 - 4790740 + | CMP/dCMP deaminase zinc-binding Cphy_3894 4790737 - 4791435 + | anaerobic ribonucleoside-triphosphate reductase activating protein Cphy_3895 4791616 - 4792167 + | GCN5-related N-acetyltransferase TERM 5331 4792298 - 4792250 - T 86 -9.7 -3.97043 | opp_overlap 4792258, overlap 4792258 TTTAATATACAATAA CATCAGAATAGGGGTAAGCCTAA AAA TCAGGCTCTCCCCTATTTTTATA AAGTAATGTGATACT TERM 5332 4792258 - 4792290 + T 93 -9.1 -4.86001 | opp_overlap 4792258 4792250 ACAATAACATCAGAA TAGGGGTAAGCCTAA AAA TCAGGCTCTCCCCTA TTTTTATAAAGTAAT TERM 5333 4792290 - 4792258 - T 100 -13.5 -3.5756 | opp_overlap 4792258, overlap 4792250 ACAATAACATCAGAA TAGGGGTAAGCCTAA AAA TCAGGCTCTCCCCTA TTTTTATAAAGTAAT Cphy_3896 4793756 - 4792329 - | hypothetical protein TERM 5334 4792690 - 4792676 - G 71 -8.6 -3.19884 | opp_overlap 4792678, overlap 4792675 ACATATGAGGAAAAC GATCCA TGA TGGATC TTGCCGAAGGGTGGT TERM 5335 4793308 - 4793328 + g 74 -3.9 -5.11389 | opp_overlap 4793305 4793308, overlap 4793300 4793305 ATCTCAACAACAGAA GGTTGCTTC CTT GATTCAACC TTTTCTTTCTCTTCT Cphy_3897 4794020 - 4795861 + | ABC transporter related TERM 5336 4795974 - 4796012 + T 83 -6.9 -4.80959 | gap 1, opp_overlap 4795971 4795979, overlap 4795979 CCTTGTCATGAATAA AAAAATCCAAGGTAT-GC CTGA GCTATTCCTTGGATTTTC TTTTATTATGAGTTA TERM 5337 4795979 - 4796007 + T 88 -6.8 -5.31091 | gap 1, opp_overlap 4795971 4795979, overlap 4795974 TCATGAATAAAAAAA TCCAAGGTAT-GC CTGA GCTATTCCTTGGA TTTTCTTTTATTATG TERM 5338 4796007 - 4795979 - T 100 -6.8 -5.84381 | gap 1, opp_overlap 4795979 4795974, overlap 4795971 TCATGAATAAAAAAA TCCAAGGTAT-GC CTGA GCTATTCCTTGGA TTTTCTTTTATTATG Cphy_3898 4797032 - 4796148 - | GCN5-related N-acetyltransferase TERM 5339 4796901 - 4796857 - G 100 -12.2 -5.54192 | AGTAATGCAAAAAAA CCTACTACCAATTCCCCTTC ATAAA GAAGGGCAAATGGTGGCAGG CCAAATTCTTCATAT Cphy_3899 4797934 - 4797062 - | dimethyladenosine transferase Cphy_3900 4798843 - 4798055 - | TatD family hydrolase Cphy_3901 4799812 - 4798910 - | 1-phosphofructokinase TERM 5340 4799006 - 4798967 - G 71 -7.2 -3.84961 | opp_overlap 4798968, overlap 4798968 CAGCCAATCACTAAA TGCACTTGCACTTCCTGT TTGT ACAGAAAGCTCAAATGCT TTTCTAAAATCACCT TERM 5341 4799005 - 4798968 - G 77 -10.7 -2.90494 | opp_overlap 4798968, overlap 4798967 AGCCAATCACTAAAT GCACTTGCACTTCCTGT TTGT ACAGAAAGCTCAAATGC TTTTCTAAAATCACC Cphy_3902 4800206 - 4799919 - | hypothetical protein TERM 5342 4800305 - 4800337 + H 100 -14.5 -3.79874 | opp_overlap 4800315, overlap 4800303 4800306 GCAAAAAACGCACCT TTTATCAGAAGTTTA TAA TAAACTTCTGATAAG TTATATTATATCACG TERM 5343 4800306 - 4800336 + H 100 -15.8 -2.87443 | opp_overlap 4800315, overlap 4800303 4800305 CAAAAAACGCACCTT TTATCAGAAGTTTA TAA TAAACTTCTGATAA GTTATATTATATCAC TERM 5344 4800457 - 4800491 + H 77 -8.9 -3.28447 | opp_overlap 4800461 4800477 4800483, overlap 4800455 4800461 CCCCTTGTAATTTAA TAAATAGTGTATATA ATCAA TATATACACTATATA TATTATAGTGACTAA TERM 5345 4800461 - 4800487 + H 76 -9.7 -3.16203 | opp_overlap 4800461 4800477 4800483, overlap 4800457 4800455 TTGTAATTTAATAAA TAGTGTATATA ATCAA TATATACACTA TATATATTATAGTGA TERM 5346 4800487 - 4800461 - H 90 -9.7 -4.2528 | opp_overlap 4800461 4800457 4800455, overlap 4800477 4800483 TTGTAATTTAATAAA TAGTGTATATA ATCAA TATATACACTA TATATATTATAGTGA TERM 5347 4800701 - 4800686 - g 90 -9 -4.41047 | opp_overlap 4800685 ACCGGTGAATTAAAA GAAGGG GACG CCCTTC CTTCGATGAGACTTT Cphy_3903 4800593 - 4800967 + | GntR family transcriptional regulator Cphy_3904 4800970 - 4801848 + | ABC transporter related TERM 5348 4801916 - 4801903 - f 86 -9.5 -4.04206 | CTATCTTTATACAAA GGCGC TAGG GCGCC AGAAATGAGGTTAAT Cphy_3905 4801932 - 4802546 + | transporter protein Cphy_3906 4802885 - 4804489 + | phosphoenolpyruvate-protein phosphotransferase Cphy_3907 4805017 - 4804493 - | nucleoside recognition domain-containing protein Cphy_3908 4805692 - 4805102 - | spore maturation protein Cphy_3909 4806279 - 4806536 + | AbrB family transcriptional regulator TERM 5349 4806720 - 4806761 + T 84 -5.5 -5.43487 | gap 1, opp_overlap 4806720 TTGGCAGCAAAAAAA GTATAGAAAATCATGCTT ACAATCA AAGCATT-TTTTCTATAC TTTTTTATATCCTTT TERM 5350 4806761 - 4806720 - T 87 -5.5 -5.52384 | gap 1, opp_overlap 4806720 TTGGCAGCAAAAAAA GTATAGAAAATCATGCTT ACAATCA AAGCATT-TTTTCTATAC TTTTTTATATCCTTT Cphy_3910 4807620 - 4806775 - | uroporphyrin-III C/tetrapyrrole methyltransferase Cphy_3911 4808415 - 4807645 - | methyltransferase type 11 TERM 5351 4808364 - 4808385 + g 71 -8.9 -3.24563 | overlap 4808361 4808362 CCAATCTCTCTCCTT CAAAAAGAA GTTC TTCTTTTTG TGTTATAGAAATTTT Cphy_3912 4809310 - 4808408 - | PSP1 domain-containing protein Cphy_3913 4810399 - 4809407 - | DNA polymerase III, delta prime subunit Cphy_3914 4810861 - 4810421 - | hypothetical protein TERM 5352 4810906 - 4810937 + r 80 -10.3 -2.61796 | opp_overlap 4810906, overlap 4810905 TGATATTAAATATTA TGTCGTAATCATG TGTAAT CATGATTGCGGCA CTTCGTCTCGTTTTG Cphy_3915 4811726 - 4811136 - | guanylate kinase/L-type calcium channel region Cphy_3916 4813158 - 4811719 - | Orn/Lys/Arg decarboxylase major region TERM 5353 4812433 - 4812447 + g 74 -4.4 -4.93177 | opp_overlap 4812435, overlap 4812439 ACTACTAGTCTCATA TATTTT TAA AAAATA TTTTATTGCTTTTTC Cphy_3917 4813411 - 4814055 + | tRNA (guanine-N(7)-)-methyltransferase TERM 5354 4814257 - 4814229 - g 88 -8.2 -4.56597 | opp_overlap 4814235, overlap 4814231 TGGTTTGCTGAAAAA TTCCAACCTCCT AAAGA AGAAGGTTGGTA CTACAGATAACAAGC TERM 5355 4814255 - 4814231 - g 78 -10.8 -2.60032 | opp_overlap 4814235, overlap 4814229 GTTTGCTGAAAAATT CCAACCTCCT AAAGA AGAAGGTTGG TACTACAGATAACAA Cphy_3918 4814152 - 4814424 + | hypothetical protein Cphy_3919 4814554 - 4814865 + | thioredoxin TERM 5356 4814872 - 4814904 + T 100 -19.4 -5.70829 | opp_overlap 4814872 AATGCATAAGAAAAA TCCTGTTCCTAGCA CTCTT TGCTAGGAACAGGA TTTTTTTATCGTATT TERM 5357 4814904 - 4814872 - T 100 -19.4 -5.21236 | opp_overlap 4814872 AATGCATAAGAAAAA TCCTGTTCCTAGCA CTCTT TGCTAGGAACAGGA TTTTTTTATCGTATT Cphy_3920 4816214 - 4814910 - | hypothetical protein TERM 5358 4816630 - 4816666 + r 79 -5.1 -5.1675 | overlap 4816615 GAAGACGCATTAGAA GTCTTCGTTTGGCAGAT AAT AGCTGCTGGGTGAGGAC TTTTTTAATCGATAA TERM 5359 4816712 - 4816687 - R 83 -6.9 -4.80959 | TAATCGATAAGAAAA TGCAGAGCATT AAAA AACGCTTTGCA TTAAAAGTTGCTCCA TERM 5360 4817001 - 4817039 + r 80 -5.3 -5.25699 | AAGACGCATCATAAA GTCCTCGTTTGGCGA ACGCAAGAG TCGCTGGGTGAGGAC TTTTTCTTGTCTAAT Cphy_3921 4818356 - 4817058 - | DNA-directed DNA polymerase TERM 5361 4818117 - 4818130 + g 86 -5.3 -5.25735 | TGCTGCCCCTAGAGC TTCAC CTGT GTGAA TTTTTAGTTTTTTAG Cphy_3922 4819669 - 4818485 - | IS605 family transposase OrfB Cphy_3923 4820171 - 4819905 - | hypothetical protein Cphy_3924 4820802 - 4821464 + | hypothetical protein Cphy_3925 4821675 - 4824293 + | bifunctional acetaldehyde-CoA/alcohol dehydrogenase TERM 5362 4824434 - 4824448 + T 71 -5.6 -4.59414 | opp_overlap 4824434 4824433 4824428, overlap 4824428 GTGAAGCAAGAAAAG GTACGC TTT GCGAAC TTTTCCTTATTATGA TERM 5363 4824462 - 4824488 + T 74 -9.6 -2.55551 | overlap 4824466 ACTTTTCCTTATTAT GAAAGATAGCAT CTT GTGTTATCTTTC TCGCTTCCCCTTATG TERM 5364 4824515 - 4824552 + T 84 -10.1 -3.46904 | opp_overlap 4824520, overlap 4824520 TATGGGTTCATATAA AAAAAGAAGGAAGAG CCCCCTTT CTCTTCCTTCTTTTA TATTTAAATATCTTT TERM 5365 4824520 - 4824547 + T 100 -10 -4.80455 | opp_overlap 4824520, overlap 4824515 GTTCATATAAAAAAA GAAGGAAGAG CCCCCTTT CTCTTCCTTC TTTTATATTTAAATA TERM 5366 4824547 - 4824520 - T 100 -10 -5.71712 | opp_overlap 4824515 4824520 GTTCATATAAAAAAA GAAGGAAGAG CCCCCTTT CTCTTCCTTC TTTTATATTTAAATA Cphy_3926 4825388 - 4824573 - | ABC transporter related Cphy_3927 4826486 - 4825740 - | Mn2+-dependent serine/threonine protein kinase Cphy_3928 4826781 - 4827503 + | L-ribulose-5-phosphate 4-epimerase TERM 5367 4827588 - 4827578 - f 71 -8.2 -3.36862 | opp_overlap 4827581 4827584, overlap 4827576 4827574 TATAATAACAATATA CGGG CCC CCCG TCAAGTCTATCTTGA TERM 5368 4827581 - 4827611 + F 73 -7.5 -3.64915 | opp_overlap 4827578 4827576 4827574, overlap 4827584 AATAACAATATACGG GCCCCCCGTCAAG TCTAT CTTGATCGGGGTC TTGTCGTTTATCCAA TERM 5369 4827584 - 4827609 + F 80 -9.8 -3.39897 | gap 1, opp_overlap 4827578 4827576 4827574, overlap 4827581 AACAATATACGGGCC CCCCG-TCAAG TCTAT CTTGATCGGGG TCTTGTCGTTTATCC TERM 5370 4827777 - 4827791 + G 80 -8.6 -3.96148 | overlap 4827768 TTGCATTTACAGTCA CCGTAA TAA TTACGG TTTCTCCTGCCACAG TERM 5371 4829104 - 4829090 - g 79 -3.5 -5.54264 | overlap 4829093 AAAGATTCAAAAAAA CAGGG TTCTT CCCTA GTAAAACCAGCACTT TERM 5372 4829124 - 4829147 + G 70 -5.4 -4.45151 | AACCAGCACTTCTTG GAATTATAGC TACT GTTATAGTTC TTTTGGTTGGATATT Cphy_3929 4827725 - 4829275 + | Serine-type D-Ala-D-Ala carboxypeptidase TERM 5373 4829346 - 4829321 - T 100 -11.2 -4.52803 | opp_overlap 4829317 4829321 GACAAACTTACAAAA GGTCAGCACC TTTCTT AGTGCTGACC TTATTATTGACCTTA TERM 5374 4829321 - 4829346 + T 91 -10.5 -3.97139 | opp_overlap 4829321, overlap 4829317 GACAAACTTACAAAA GGTCAGCAC CTTTCTTA GTGCTGACC TTATTATTGACCTTA Cphy_3930 4830136 - 4829441 - | hypothetical protein TERM 5375 4830502 - 4830526 + r 72 -8.6 -3.08679 | opp_overlap 4830492 4830503 AATAACTTTAAAAAA AGCTGTAGGT ATCTA ACCTACAGCC TATTACGTCCCCAAC TERM 5376 4830525 - 4830503 - R 100 -12.1 -5.48303 | opp_overlap 4830502 ATAACTTTAAAAAAA GCTGTAGGT ATCTA ACCTACAGC CTATTACGTCCCCAA Cphy_3931 4831512 - 4830637 - | hypothetical protein Cphy_3932 4832715 - 4831633 - | metal dependent phosphohydrolase TERM 5377 4832849 - 4832811 - R 95 -9.1 -5.14163 | gap 1, opp_overlap 4832821 ACTTATTAATAAAAA GTCTTAGAACGAA-GACA CTTC TTTCATTCGCTCTAAGAC CACTTAATCTTACTC Cphy_3933 4833371 - 4832859 - | hypothetical protein Cphy_3934 4834327 - 4833440 - | parB-like partition protein TERM 5378 4834217 - 4834232 + g 78 -6.2 -4.84642 | opp_overlap 4834217, overlap 4834227 ATTAATATTAATAAA TGTTTC ACGT GAAACA TTTTCTTGATTTCCC Cphy_3935 4835184 - 4834330 - | cobyrinic acid ac-diamide synthase TERM 5379 4834813 - 4834854 + g 70 -2.5 -5.14477 | opp_overlap 4834825, overlap 4834815 4834826 CGAAGGAGGACAGTC TATAATAATGTAGTCAAAG AAAT CTTTGATTGGATTAATATG TTTTTTAAGTATATA TERM 5380 4835635 - 4835671 + r 73 -7.6 -3.7108 | gap 1, opp_overlap 4835631 4835639 4835645, overlap 4835610 4835637 4835639 TAAATTTATAAGTTA TAG-ATTACAATGTTTC ACGT GAAACATTGTAATGCTC TTTCGATATAAAACT TERM 5381 4835637 - 4835669 + r 84 -10.2 -3.43773 | gap 1, opp_overlap 4835631 4835639 4835645, overlap 4835610 4835635 4835639 AATTTATAAGTTATA G-ATTACAATGTTTC ACGT GAAACATTGTAATGC TCTTTCGATATAAAA TERM 5382 4835666 - 4835639 - R 100 -13 -2.96711 | opp_overlap 4835610 4835637 4835635 4835639, overlap 4835631 4835645 TTTATAAGTTATAGA TTACAATGTTTC ACGT GAAACATTGTAA TGCTCTTTCGATATA TERM 5383 4835639 - 4835666 + r 100 -13 -2.86838 | opp_overlap 4835639 4835631 4835645, overlap 4835610 4835637 4835635 TTTATAAGTTATAGA TTACAATGTTTC ACGT GAAACATTGTAA TGCTCTTTCGATATA TERM 5384 4835990 - 4836017 + r 76 -7.2 -4.23999 | opp_overlap 4835996 TACGTTATAGATTTA TTACAATGTTTC ACGT GAAACATTATAA TTCTTTTCAATATAA TERM 5385 4836428 - 4836440 + r 73 -7.7 -3.61398 | opp_overlap 4836428 4836424 4836423 TTACTTATAACTCAA GCAAC TAC GTTGC TTGTTCAGCGGGAAC TERM 5386 4836484 - 4836505 + r 70 -6.5 -4.29227 | opp_overlap 4836477, overlap 4836485 GAAACAAGCAAGTCT ATCCCCCTT AAAA GAGGGGGAC TTTCTTGATGGTTAA TERM 5387 4836485 - 4836504 + r 81 -10 -3.16813 | opp_overlap 4836477, overlap 4836484 AAACAAGCAAGTCTA TCCCCCTT AAAA GAGGGGGA CTTTCTTGATGGTTA TERM 5388 4836582 - 4836560 - R 87 -5.6 -5.63103 | opp_overlap 4836560 TCTTAACTAAAAAAA GAGATAGACT AAA ACTCTATCCC TAATCTTTTATGGCA Cphy_3936 4837242 - 4836601 - | two component LuxR family transcriptional regulator Cphy_3937 4838346 - 4837246 - | histidine kinase TERM 5389 4838001 - 4838020 + g 74 -3.6 -5.1101 | overlap 4838004 AATTAGTTAAACAGC TTAGTATC AATT GATACTTA TTTTTTAAGTCATAG TERM 5390 4838004 - 4838017 + g 73 -5.3 -4.64763 | overlap 4838001 TAGTTAAACAGCTTA GTATC AATT GATAC TTATTTTTTAAGTCA Cphy_3938 4838935 - 4838447 - | GCN5-related N-acetyltransferase Cphy_3939 4839748 - 4839020 - | methyltransferase GidB Cphy_3940 4841905 - 4840022 - | tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA Cphy_3941 4843311 - 4841935 - | tRNA modification GTPase TrmE TERM 5391 4843586 - 4843539 - R 100 -13.7 -3.79882 | gap 1, opp_overlap 4843577 ATAATATTTAGGAAA GGCTGTTACACAGG-AAGTACC GCCTA GATACTTTCCTATGTCACAGCC TGACAATTTAATACT Cphy_3942 4844439 - 4843609 - | single-stranded nucleic acid binding R3H domain-containing protein TERM 5392 4844051 - 4844062 + g 70 -3 -5.1963 | opp_overlap 4844051 AACTTTACCTTAAGA TAAC CTTC GTTA TTTTTATTAATTACA Cphy_3943 4845767 - 4844439 - | 60 kDa inner membrane insertion protein Cphy_3944 4846032 - 4845820 - | hypothetical protein Cphy_3945 4846514 - 4846164 - | ribonuclease P protein component TERM 5393 4846747 - 4846729 - R 83 -6.7 -4.81212 | opp_overlap 4846729 CGTATTAGAAGAAAA GGTCACA TGAAC TGCGACC TATGCTGATAATTTA Cphy_3946 4846881 - 4846747 - | ribosomal protein L34