TransTermHP v2.07 (built on Jan 21 2009) 25 bins; sample size is 20000000 --pval-conf=/fs/szasmg2/carlk/TTupdate2/expterm.dat --gc=-2.3 --au=-0.9 --gu=1.3 --mm=3.5 --gap=6 --max-len=59 --min-stem=4 --max-loop=13 --min-loop=3 --uwin-length=6 --uwin-require=3 --max-hp-score=-2 --max-tail-score=-2.5 --loop-penalty=1,2,3,4,5,6,7,8,9,10,11 --start-cut=0 --end-cut=25 Genes: 0.594987 %AT, 3135965 nt, 16270 terms. Intergenic: 0.677298 %AT, H2T: 525504 nt, 3707 terms; T2T: 100420 nt, 2000 terms; H2H: 129458 nt, 1944 terms. Each terminator entry starts in column 3 and is of the form: term # start - end +/- regionconf hp tail | notes Followed by the sequence of the 5' tail, 5' stem, loop, 3' stem, and 3' tail. Genes are interspersed, and start the first column. SEQUENCE gi|125972525|ref|NC_009012.1| Clostridium thermocellum ATCC 27405, complete genome (length 3843301) TERM 1 555 - 544 - g 79 -3.6 -5.46698 | overlap 546 CCGAAAAGTAAAAAA CGGC TACC GCCA GCGGGCACTCAACGG Cthe_0001 104 - 1723 + | recombinase Cthe_0002 1883 - 2602 + | hypothetical protein Cthe_0003 2599 - 3528 + | ankyrin repeat-containing protein TERM 2 3665 - 3708 + F 100 -8.9 -5.5762 | opp_overlap 3664 TAAATTGATACAACG GGCTGGCAAGCATTTTCCT GAATAG AGGAATTTGCTTGGCAGTC TTTTTTATATTTCAT TERM 3 4378 - 4358 - g 79 -9.8 -3.72756 | CAAGAAGAGATATAA CCATACCT TCAAG AGGTATGG CGCTTGAGATAACCA TERM 4 4570 - 4582 + G 77 -6.3 -4.56597 | opp_overlap 4568 AAATCTCCCAAAGGT GTGTA CGA TACAC TTTTTAAAACAGAGG Cthe_0004 3874 - 9702 + | YD repeat-containing protein Cthe_0005 9715 - 10572 + | hypothetical protein Cthe_0006 10818 - 11210 + | hypothetical protein Cthe_0007 11461 - 11994 + | hypothetical protein Cthe_0008 12187 - 12489 + | hypothetical protein TERM 5 13234 - 13248 + G 77 -6.4 -4.56597 | opp_overlap 13246 TCAAATCTTCCAAGG GTGTGT ACG ACACGC TTTTTAAGGCGGAAG TERM 6 13982 - 13972 - g 70 -3.2 -4.89852 | GCAGACTGATAAAAA CAGT GTC ACCG GGCGGCGGAGAAGTA TERM 7 15039 - 15027 - g 70 -7.7 -3.76379 | GAATATGTGACCAAA TCGGA ATA TCCGA AGAAATGGAACGTAA Cthe_0009 12555 - 18077 + | YD repeat-containing protein Cthe_0010 18109 - 18486 + | hypothetical protein Cthe_0011 18824 - 19099 + | hypothetical protein Cthe_0012 19302 - 19493 + | YD repeat-containing protein Cthe_0013 19560 - 19916 + | hypothetical protein TERM 8 20024 - 20012 - f 79 -3.5 -5.62045 | ATATATAATAAAAAA TATAT AAA ATATA AATAAAAAACTGAGA Cthe_0014 20125 - 20421 + | hypothetical protein TERM 9 21940 - 21950 + G 75 -8.2 -3.98981 | opp_overlap 21919 21939 TATATACAATACAGT CCGG ATA CCGG TTATTATTACCTGTT Cthe_0015 20533 - 22656 + | alpha-L-arabinofuranosidase B TERM 10 22696 - 22739 + F 93 -7 -5.4387 | gap 1, opp_overlap 22699 22702, overlap 22699 TTGTTTTATATTAAA TAA-TAAGCTTTGGCATGA TTACACT TCTTGCCGAAGCTTATTTA TTTTTTACTTTATAT TERM 11 22735 - 22699 - f 79 -8.1 -4.04806 | opp_overlap 22696 22699, overlap 22702 TTTTATATTAAATAA TAAGCTTTGGCATGA TTACACT TCTTGCCGAAGCTTA TTTATTTTTTACTTT TERM 12 22699 - 22735 + F 100 -10.3 -5.14819 | opp_overlap 22699 22702, overlap 22696 TTTTATATTAAATAA TAAGCTTTGGCATGA TTACACT TCTTGCCGAAGCTTA TTTATTTTTTACTTT TERM 13 22796 - 22786 - f 77 -4.6 -5.16572 | AGGCAATGCAAAAAA GGCG GCC CACC GAATTTTGGAAGTAA TERM 14 23123 - 23135 + G 72 -3.3 -5.08824 | opp_overlap 23124, overlap 23124 ATTCCCTTAACATGA AGGGT ATG ACCCA TTTTTTCGATGAGCA TERM 15 23312 - 23300 - g 72 -3.3 -5.14563 | TTGCCCATGAAAAAA CGGTA ACT TCCCG TATAAATGATTTGGT Cthe_0016 23020 - 23499 + | Ferritin and Dps Cthe_0017 24056 - 25918 + | hypothetical protein Cthe_0018 25946 - 26260 + | hypothetical protein Cthe_0019 26276 - 26602 + | P-II family regulatory protein TERM 16 26640 - 26679 + F 75 -5 -5.03961 | overlap 26641 TGTCGGCAAATGACA GCAGGTTGGGGATTTTTT GCAA GAAAGTTTCCCAGCCTGA TTTTATTGTTTGATT TERM 17 26641 - 26678 + F 77 -8.5 -3.59937 | overlap 26640 GTCGGCAAATGACAG CAGGTTGGGGATTTTTT GCAA GAAAGTTTCCCAGCCTG ATTTTATTGTTTGAT TERM 18 26689 - 26728 + F 70 -3.8 -4.99638 | overlap 26687 GCCTGATTTTATTGT TTGATTGTCAACCTTG AATTAAAA TAAAGTTGACAATTAA TTTTTATATGGATAT Cthe_0020 26797 - 27759 + | biotin synthase Cthe_0021 27756 - 28490 + | dethiobiotin synthase Cthe_0022 28483 - 29649 + | 2-amino-3-ketobutyrate coenzyme A ligase Cthe_0023 29649 - 30425 + | pimeloyl-CoA synthesis (biotin biosynthesis) Cthe_0024 30415 - 31266 + | biotin biosynthesis protein BioC Cthe_0025 31259 - 32632 + | adenosylmethionine-8-amino-7-oxononanoate aminotransferase Cthe_0027 34060 - 34431 + | hypothetical protein Cthe_0028 35625 - 34615 - | uncharacterized protein, YcgL-like protein TERM 19 34896 - 34908 + g 85 -4.1 -5.66229 | TGGCATGTTTGTTAA GGTGA GGT TCATC TTTTTTGTTGTTCCT Cthe_0029 36062 - 36700 + | hypothetical protein Cthe_0030 36870 - 37580 + | phosphatidate cytidylyltransferase Cthe_0031 37585 - 38208 + | putative membrane transporter TERM 20 38258 - 38213 - T 76 -5.6 -4.99134 | opp_overlap 38216, overlap 38216 ATTGGAAATGAAAAA GAAGTACCCCCTGATGAT TTTTTAAAGG ATAATCAGAGGGTACTTT TTCTTATTATTTTTC TERM 21 38216 - 38255 + T 100 -9.4 -5.40014 | opp_overlap 38213 38216 GGAAATGAAAAAGAA GTACCCCCTGATGATTTT TTAA AGGATAATCAGAGGGTAC TTTTTCTTATTATTT TERM 22 38255 - 38216 - T 80 -7.3 -4.58698 | opp_overlap 38216, overlap 38213 GGAAATGAAAAAGAA GTACCCCCTGATGAT TTTTTAAAGG ATAATCAGAGGGTAC TTTTTCTTATTATTT Cthe_0032 40085 - 38313 - | glycoside hydrolase family protein TERM 23 40128 - 40114 - H 87 -4.4 -5.72254 | overlap 40107 40104 TTAAATAATAAAAAA TTTATT AAA AATAAA AATAACTATCTCATT Cthe_0033 40454 - 43120 + | small GTP-binding protein Cthe_0034 43896 - 43237 - | cyclic nucleotide-binding protein Cthe_0035 44011 - 44715 + | 4Fe-4S ferredoxin, iron-sulfur binding Cthe_0036 44775 - 46403 + | hydroxylamine reductase TERM 24 46428 - 46468 + T 100 -14.2 -2.81187 | gap 1, opp_overlap 46428 46430 46432 46436, overlap 46436 TAAAGCATGGAATAA CAG-ACAAAGGGCCAATCG GCAA TGATTGGCCCTTTGTACAG TATAGTGCAATATTT TERM 25 46468 - 46428 - T 100 -13.5 -3.71924 | gap 1, opp_overlap 46428 46436, overlap 46430 46432 46436 TAAAGCATGGAATAA CAG-ACAAAGGGCCAATC GGCAAT GATTGGCCCTTTGTACAG TATAGTGCAATATTT TERM 26 46465 - 46430 - T 100 -14.9 -3.43104 | opp_overlap 46428 46436, overlap 46428 46432 46436 AAGCATGGAATAACA GACAAAGGGCCAATC GGCAAT GATTGGCCCTTTGTA CAGTATAGTGCAATA TERM 27 46463 - 46432 - T 100 -17.5 -3.27902 | opp_overlap 46428 46436, overlap 46430 46428 46436 GCATGGAATAACAGA CAAAGGGCCAATC GGCAAT GATTGGCCCTTTG TACAGTATAGTGCAA TERM 28 46459 - 46436 - T 100 -12.5 -4.28067 | opp_overlap 46436 46428, overlap 46432 46430 46428 GGAATAACAGACAAA GGGCCAATC GGCAAT GATTGGCCC TTTGTACAGTATAGT TERM 29 46436 - 46459 + T 100 -13.2 -3.91412 | opp_overlap 46432 46430 46428 46436, overlap 46428 GGAATAACAGACAAA GGGCCAATCG GCAA TGATTGGCCC TTTGTACAGTATAGT Cthe_0037 46933 - 46505 - | heat shock protein Hsp20 Cthe_0038 47035 - 47292 + | chemotaxis protein cheW TERM 30 47626 - 47610 - g 76 -2.3 -5.38951 | AAGGTATAGAAAAAA TTCAAGA ACA TGTTGAA AATACTGAAAAATAT TERM 31 47798 - 47769 - g 71 -6.6 -4.12942 | gap 1, opp_overlap 47774 47777, overlap 47759 47774 TTAAATCGGGGAAAA CCGA-AGAAGCAA GACAG TTGCTTCTTTCAG ATATTGATGATATTG Cthe_0039 47345 - 49216 + | methyl-accepting chemotaxis sensory transducer TERM 32 49243 - 49270 + F 95 -9.3 -5.0538 | opp_overlap 49243 ATAAAAATACGTAAA GCAGAGTGAAT TTTGAC ATTTACTCTGC TTTTTTAAAATACCA TERM 33 49270 - 49243 - f 72 -7.1 -3.89368 | opp_overlap 49243 ATAAAAATACGTAAA GCAGAGTGAAT TTTGAC ATTTACTCTGC TTTTTTAAAATACCA TERM 34 49703 - 49715 + G 87 -3.4 -5.72616 | AACTACGGTGAAGCG TTGC AAAAA GCAA TTTTTTTCTATGAGT TERM 35 51378 - 51395 + G 72 -8.3 -3.44848 | opp_overlap 51376, overlap 51376 TGCAGTTTAGAATTT CCGCGCC GGAG GGCACGG TGTTTAATCCGGAAA TERM 36 52023 - 52001 - g 72 -8.5 -3.51411 | AGGTTTTCAAAGGAA GACTGGTCA AACTA TAACCAGTC AAACGATTATTCTTT Cthe_0040 49460 - 52123 + | cellulose 1,4-beta-cellobiosidase Cthe_0041 52559 - 52125 - | hypothetical protein Cthe_0042 52784 - 53986 + | small GTP-binding protein TERM 37 56354 - 56341 - g 77 -9.5 -3.61398 | TTGTGGGGTGAAGAA CCGCC TGCC GGCGG TGATGATCCCGGGTC Cthe_0043 54373 - 56601 + | glycoside hydrolase family protein TERM 38 56665 - 56637 - T 100 -13.3 -5.24129 | opp_overlap 56637 GTGTTGCAGAAAAAA TCCTACGGATG GAATGGT CATCCGTAGGA TTTTTGTTATGCCTG TERM 39 56637 - 56665 + T 100 -14 -5.20333 | opp_overlap 56637 GTGTTGCAGAAAAAA TCCTACGGATGG AATGG TCATCCGTAGGA TTTTTGTTATGCCTG Cthe_0044 58326 - 56725 - | cellulosome enzyme, dockerin type I TERM 40 57135 - 57153 + g 72 -4.5 -4.75776 | TGTATGGGCGGATTA GCTCGTG AAGCC TGCGAGC TTTTTCGATTACATT Cthe_0045 58680 - 59489 + | copper amine oxidase-like protein TERM 41 60803 - 60791 - g 79 -4.8 -5.16572 | overlap 60792 AGTTAATTTAAAAAA GCCA GGTAG TGGC TGGTGGAGTGGAAAT TERM 42 60965 - 60946 - g 80 -6.5 -4.80882 | ATGTGAGAGCAAAAA TCCAAAG AAGTGA CTTTGGA GATGACCCTGAAAAC TERM 43 61261 - 61243 - g 72 -3.2 -5.17488 | overlap 61232 AATATGAAAATAAAA TTGTCA ATAATTA TGACAA AGACTTTAAAGCAAG Cthe_0046 59535 - 62237 + | hypothetical protein TERM 44 62290 - 62338 + F 91 -7.6 -5.17507 | gap 1 AAAAATAACAACTGA CCGTGTTATCCTGAAAAGTGTGT TTGC ACTTAGTTTTCAGGG-GACACGG TTTTTGTTAGCTTTT TERM 45 62514 - 62495 - g 80 -2.2 -5.53991 | opp_overlap 62495 62507, overlap 62498 62507 GAGGGATGAAAAAAA TAGCAATA ATGA TATTGATA ATATTCATGTCAACC Cthe_0047 62485 - 63294 + | copper amine oxidase-like protein TERM 46 63343 - 63324 - g 80 -2.2 -5.53991 | opp_overlap 63324 63336, overlap 63327 63336 GAGGGATGAAAAAAA TAGCAATA ATGA TATTGATA ATATTCATGTCAACC TERM 47 63862 - 63874 + G 71 -4.9 -4.56775 | opp_overlap 63862 63870 TAGCTATGAAGCAAC GTTTA CAA TAAAC TTTTTAAAAAACGAT Cthe_0048 63314 - 64123 + | copper amine oxidase-like protein Cthe_0049 64209 - 64871 + | XRE family transcriptional regulator TERM 48 65492 - 65468 - g 77 -8.7 -3.95219 | TGCAAATGGGATAAA TGAATCTTTTG ATT CAAAAGATGCA AATTCCGATAATCCG Cthe_0050 65172 - 66131 + | hypothetical protein TERM 49 66181 - 66211 + F 91 -8.4 -5.055 | opp_overlap 66175 GGAGAAAATTAAAAA GAAGTTGACAGGAG TGA TTCTTGTTGACTTC TTTTTTCGCAATTCG TERM 50 66305 - 66250 - f 73 -7.9 -3.57144 | gap 1, opp_overlap 66269, overlap 66251 66269 GTTTTCATGTTTAAA CGTGCCCATGCCAAGCAAATAATATT ACAAA AATATTATTTGAATGGGATGGG-ACA AAAGGAATGCTAAAG TERM 51 66304 - 66251 - f 72 -9.2 -2.74144 | gap 1, opp_overlap 66269, overlap 66250 66269 TTTTCATGTTTAAAC GTGCCCATGCCAAGCAAATAATATT ACAAA AATATTATTTGAATGGGATGGG-AC AAAAGGAATGCTAAA Cthe_0051 66312 - 67571 + | hypothetical protein Cthe_0052 67772 - 69031 + | hypothetical protein TERM 52 69084 - 69117 + F 100 -10.5 -5.86465 | overlap 69086 ATTGTGTTATTATTG TGGATAGCAAATGGA TTTT TTCATTTGCTATCTG TTTTTTTATCTTCTT TERM 53 69086 - 69115 + F 100 -13.1 -4.53737 | overlap 69084 TGTGTTATTATTGTG GATAGCAAATGGA TTTT TTCATTTGCTATC TGTTTTTTTATCTTC Cthe_0053 69309 - 71693 + | ribonucleotide-diphosphate reductase subunit alpha TERM 54 71718 - 71753 + F 82 -7.7 -4.59944 | gap 1 ATTTTGACGCAACGG GGAGTGTTGCAAA-CT TAATT GGTTTTGCGGCACTCC TTTATTTGTACTGAT Cthe_0054 71948 - 74137 + | hypothetical protein TERM 55 74157 - 74188 + F 100 -6.7 -5.79595 | gap 1, opp_overlap 74157 GAAGACGATAAAACG GATGTCC-CTACTT TTTAT GAGTGGTGGACATC TTTTTTCTTTTAAAG Cthe_0055 74379 - 74915 + | hypothetical protein TERM 56 74944 - 74974 + F 87 -7.7 -4.77775 | opp_overlap 74943 74947 AAAGCTATATCAAGG GAATTCGACCT ATTATAACC GGGTCGAATTC TTTATTTTGTAAAAT TERM 57 75099 - 75083 - f 71 -5.2 -4.59773 | opp_overlap 75083 TGTTAGTTTTAAAAA TTGCAT AATAA ATGCAA ATATTCTAAGATATT TERM 58 75162 - 75149 - f 74 -3.9 -5.14563 | opp_overlap 75141 GGGGGCATGAAAAAA GAAAA GCTT TTTTC CGTACTTTTATTCAT TERM 59 76703 - 76693 - g 71 -6.8 -4.07568 | GTGTCTTTGCCAAAA GGAG TTG CTCC TGAAGGCGGTATAAA TERM 60 77321 - 77306 - g 74 -4.6 -5.00616 | opp_overlap 77306 TGCTTCTTGAAAAAA GAACCG TAAG CGGTAC ATTATCTTTTCCCGA TERM 61 79869 - 79851 - g 71 -9.6 -2.89051 | overlap 79850 CAACAAATATATAAG CGGAACTG TCT CAATTCCG TCAGGAATAGCACCT TERM 62 81336 - 81324 - g 73 -7.7 -3.83921 | overlap 81319 81316 GGGAACACAATACAA GCTGT ATT ACAGC ATGGCACCAAATAAC TERM 63 83065 - 83055 - g 89 -6.8 -5.27476 | TGTAAGAAAAGAAAA TGCC GAA GGCA TCAATCTTACCCTTA TERM 64 84119 - 84093 - g 77 -8 -4.17023 | TGAAGTACCCGAAAA TGCAGTGCTTCC GGA GGAAGGACTCCA TGTAAGGATATACGT TERM 65 84597 - 84586 - g 72 -4.4 -4.66938 | overlap 84593 ATTTCCAAGATAAAA GGAT ATAC ATCC GTTGGATATTATGGT TERM 66 84870 - 84836 - g 70 -7.9 -3.66178 | opp_overlap 84836 TTCCGGAAGGCGAAA GTTCGGCGGACTATT ATCTG AATGTTCCGCCAAAC GCTCCTGATTCAGGA TERM 67 85466 - 85454 - g 76 -3.3 -5.24129 | opp_overlap 85436 TTTTTGCAGAAAAAA CAGGT TAT ACCGG TTACAGAGTGACAAA TERM 68 88398 - 88350 - g 73 -8.2 -3.96291 | overlap 88341 88364 TATAAATCCGACAAA TGCTTCGGATAAAACACTGGAA TGGAG TTCCAGCGATACATCCATAGCA ACGGTAAGTTCTTCC TERM 69 88384 - 88364 - g 78 -7.6 -4.37092 | overlap 88350 ATGCTTCGGATAAAA CACTGGAA TGGAG TTCCAGCG ATACATCCATAGCAA Cthe_0056 75394 - 89286 + | Ig-like, group 2 TERM 70 89320 - 89348 + T 100 -7.5 -5.80248 | gap 1, opp_overlap 89320 GGCTGAATTAAAAAA CGGAGTTGGGAT AAACAG GTCCCA-CTCCG TTTTTTTGTGTGTTC TERM 71 89348 - 89320 - T 88 -6.8 -5.26875 | gap 1, opp_overlap 89320 GGCTGAATTAAAAAA CGGAGTTGGGA TAAACAGG TCCC-ACTCCG TTTTTTTGTGTGTTC Cthe_0057 89994 - 89362 - | hypothetical protein TERM 72 89981 - 89993 + g 75 -2.7 -5.18357 | ATGTAAACGGGATTT TGAAT ATT GTTCA TTTTTTACTCACTTC TERM 73 90325 - 90356 + G 71 -6 -4.1466 | opp_overlap 90329 90351, overlap 90326 90351 AAATCATCAGCTCAG AGAAGAGTTTATAT CGGA ATATAAACCCTTCA TTTTGAAAGTTACCT TERM 74 90326 - 90355 + G 72 -9.5 -3.08314 | opp_overlap 90329 90351, overlap 90325 90351 AATCATCAGCTCAGA GAAGAGTTTATAT CGGA ATATAAACCCTTC ATTTTGAAAGTTACC Cthe_0058 90212 - 90982 + | putative RNA polymerase sigma factor SigI Cthe_0059 90979 - 92439 + | type 3a, cellulose-binding Cthe_0060 92558 - 93061 + | hypothetical protein Cthe_0061 93755 - 93207 - | BioY protein TERM 75 93924 - 93960 + r 87 -12 -2.66118 | gap 1, opp_overlap 93933, overlap 93933 TAAAAGTATATGTTA TATTAAAAA-GAGGCTT TACA AAGCCTCTTTTTTAATA TGCATTAGTTTTCGA TERM 76 93933 - 93950 + r 100 -9.9 -5.22312 | opp_overlap 93933, overlap 93924 ATGTTATATTAAAAA GAGGCTT TACA AAGCCTC TTTTTTAATATGCAT TERM 77 93950 - 93933 - R 100 -9.9 -4.80882 | opp_overlap 93933 93924 ATGTTATATTAAAAA GAGGCTT TACA AAGCCTC TTTTTTAATATGCAT Cthe_0062 95854 - 93965 - | sulfatase TERM 78 94934 - 94922 - G 73 -7.7 -3.85698 | opp_overlap 94921 94922 GTTGTTGGTTACAAA TTCCG CAT CGGAA GTATTTCCGCCTGAC TERM 79 94995 - 94978 - G 71 -4.9 -4.64861 | gap 1, opp_overlap 94978 94976 CGTTGTCAAAATAAA GGCTT-TC GCA GATAAGCC TGTTTAAATTAGGAG TERM 80 95065 - 95081 + g 73 -2.3 -5.19879 | GCTGCAAAGCCTCCA TCTGA ACGACAA TCAGA TTTTTATCTTTGGCA TERM 81 95103 - 95125 + g 72 -3.3 -5.03201 | overlap 95105 TCTTTGGCAATTCCC TTCAGCCTG CTGTC CAGGCTGTC TTTTTCATTCTTCTT TERM 82 95105 - 95123 + g 86 -10.3 -4.11092 | overlap 95103 TTTGGCAATTCCCTT CAGCCTG CTGTC CAGGCTG TCTTTTTCATTCTTC Cthe_0063 96121 - 96456 + | rubredoxin-type Fe(Cys)4 protein Cthe_0064 97433 - 96477 - | Na/Pi-cotransporter II-related protein TERM 83 96886 - 96869 - G 77 -9.9 -3.61398 | opp_overlap 96857 TGCTGCTTTGAACAA GCATGGT TGTC ACCATGC CTGTAAGAAGGCCTA TERM 84 97320 - 97332 + g 77 -7.7 -4.13995 | GGAGAGATACTTCTT CATCC TGC GGATG TTTGCTTTCTCGAGA Cthe_0065 97629 - 97967 + | hypothetical protein Cthe_0066 97964 - 98440 + | hypothetical protein Cthe_0067 98498 - 99223 + | NAD-dependent deacetylase TERM 85 99266 - 99229 - T 100 -18.1 -3.48276 | opp_overlap 99220 99233, overlap 99233 99259 CGTGGTTTGACATAA TAAATGGATTGTCTCAC TCTA ATGAGACAATCCATTTA AAGTATGGATATCTT TERM 86 99262 - 99233 - T 100 -14.5 -4.38927 | opp_overlap 99220 99233, overlap 99229 99259 GTTTGACATAATAAA TGGATTGTCTCAC TCTA ATGAGACAATCCA TTTAAAGTATGGATA TERM 87 99233 - 99262 + T 100 -13.8 -3.64103 | opp_overlap 99233 99229 99259, overlap 99220 GTTTGACATAATAAA TGGATTGTCTCA CTCTAA TGAGACAATCCA TTTAAAGTATGGATA Cthe_0068 99906 - 99295 - | peptidylprolyl isomerase Cthe_0069 100097 - 101119 + | asparagine synthetase AsnA TERM 88 101373 - 101389 + G 86 -4.4 -5.42862 | GCTTTTGGATTTATT GAACTG AATGA CGGTTC TTTTTTTAAAAATCT TERM 89 101422 - 101402 - g 71 -4.8 -4.56597 | TTCTTTTTTTAAAAA TCTTCAAA TTGTG TTCGAAGA AAAGAACCTTCCCAA asnC 101256 - 102650 + | asparaginyl-tRNA synthetase TERM 90 102685 - 102723 + T 93 -11.2 -4.0865 | opp_overlap 102685, overlap 102680 GATGTAAAAAAGAAA GGGGCGGTTTTTGTGA TGCACTT TTATAAAAACCGTCCC TTGTGTTTTATTGCA TERM 91 102723 - 102685 - T 73 -4.6 -5.0666 | opp_overlap 102685 102680 GATGTAAAAAAGAAA GGGGCGGTTTTTGTGA TGCACTT TTATAAAAACCGTCCC TTGTGTTTTATTGCA Cthe_0071 105668 - 102852 - | cellulose 1,4-beta-cellobiosidase TERM 92 103537 - 103550 + g 72 -4.5 -4.81249 | opp_overlap 103537, overlap 103526 CTGTCCGGGGTATAA TCCGG TGTT TCGGA TTTTTGAGTTTCAGA TERM 93 105621 - 105602 - G 76 -9.2 -3.65135 | opp_overlap 105600 TTGAAACAACGATAA CGGCGGCA ATTA TGCCGCAG CATGTAATAATCCTT Cthe_0072 105911 - 106396 + | phage shock protein C, PspC Cthe_0073 106393 - 107358 + | hypothetical protein TERM 94 107387 - 107422 + G 93 -9.8 -4.67608 | gap 1, opp_overlap 107397 TTTTGGGTGTGATTT GTACCAAAG-ACGGCTT TTG ATGCCGGACTTTGGTAC TTTTGTGTTAAGGTA Cthe_0074 107385 - 107576 + | ECF subfamily RNA polymerase sigma-24 factor Cthe_0075 107711 - 108454 + | hypothetical protein Cthe_0076 108653 - 109042 + | hypothetical protein TERM 95 109080 - 109131 + F 100 -15 -4.06502 | opp_overlap 109080 109085 109091 109098, overlap 109082 109085 109091 109098 GAAATATATTTGAAA TTTAATACAAAGAAAAAACAAATT TTAA AATTTGTTTTTTCTTTGTATGATA TTTAATTTACAAATG TERM 96 109131 - 109080 - f 100 -15 -3.67954 | opp_overlap 109080 109082 109085 109091 109098, overlap 109085 109091 109098 GAAATATATTTGAAA TTTAATACAAAGAAAAAACAAATT TTAA AATTTGTTTTTTCTTTGTATGATA TTTAATTTACAAATG TERM 97 109082 - 109129 + F 100 -17.6 -3.62354 | opp_overlap 109080 109085 109091 109098, overlap 109080 109085 109091 109098 AATATATTTGAAATT TAATACAAAGAAAAAACAAATT TTAA AATTTGTTTTTTCTTTGTATGA TATTTAATTTACAAA TERM 98 109085 - 109126 + F 100 -19.3 -2.92386 | opp_overlap 109080 109085 109091 109098, overlap 109082 109080 109091 109098 ATATTTGAAATTTAA TACAAAGAAAAAACAAATT TTAA AATTTGTTTTTTCTTTGTA TGATATTTAATTTAC TERM 99 109126 - 109085 - f 100 -19.3 -3.28765 | opp_overlap 109085 109082 109080 109091 109098, overlap 109080 109091 109098 ATATTTGAAATTTAA TACAAAGAAAAAACAAATT TTAA AATTTGTTTTTTCTTTGTA TGATATTTAATTTAC TERM 100 109120 - 109091 - f 100 -12.5 -4.25401 | opp_overlap 109085 109082 109080 109091 109098, overlap 109085 109080 109098 GAAATTTAATACAAA GAAAAAACAAATT TTAA AATTTGTTTTTTC TTTGTATGATATTTA TERM 101 109091 - 109120 + F 100 -12.5 -4.15197 | opp_overlap 109091 109085 109080 109098, overlap 109085 109082 109080 109098 GAAATTTAATACAAA GAAAAAACAAATT TTAA AATTTGTTTTTTC TTTGTATGATATTTA TERM 102 109113 - 109098 - f 90 -4.8 -5.7827 | opp_overlap 109091 109085 109082 109080 109098, overlap 109091 109085 109080 AATACAAAGAAAAAA CAAATT TTAA AATTTG TTTTTTCTTTGTATG TERM 103 109098 - 109113 + F 90 -4.8 -5.76237 | opp_overlap 109098 109091 109085 109080, overlap 109091 109085 109082 109080 AATACAAAGAAAAAA CAAATT TTAA AATTTG TTTTTTCTTTGTATG Cthe_0077 109205 - 109588 + | hypothetical protein TERM 104 109581 - 109569 - T 73 -7.7 -3.75505 | TGTTAAAAAGGATAA CCCTT GGA AAGGG GAAGTAATAACTGGA TERM 105 109608 - 109637 + T 72 -5 -4.7497 | opp_overlap 109609 109613, overlap 109613 TGGAACTTATAAATA ACAAAGGAGAGC TTTATC GCTCTCCTTTAA TTTTTCATGAGTAGA TERM 106 109636 - 109609 - T 91 -10.7 -4.11304 | opp_overlap 109608 109613, overlap 109613 GGAACTTATAAATAA CAAAGGAGAGC TTTATC GCTCTCCTTTA ATTTTTCATGAGTAG TERM 107 109632 - 109613 - T 90 -9.3 -4.63048 | opp_overlap 109613 109608, overlap 109609 CTTATAAATAACAAA GGAGAGC TTTATC GCTCTCC TTTAATTTTTCATGA TERM 108 109613 - 109632 + T 89 -9.3 -4.35327 | opp_overlap 109609 109613, overlap 109608 CTTATAAATAACAAA GGAGAGC TTTATC GCTCTCC TTTAATTTTTCATGA Cthe_0078 109865 - 109659 - | hypothetical protein Cthe_0079 110150 - 110665 + | hypothetical protein Cthe_0080 111148 - 110717 - | CheW protein TERM 109 111339 - 111311 - R 100 -9.7 -5.4833 | opp_overlap 111311 GTATTGAACAAAAAA CCATGCCCTTT GGGCTTT AAAGGACATGG TTTTTTAATTGTTGA TERM 110 111311 - 111339 + r 100 -8.9 -5.37865 | opp_overlap 111311 GTATTGAACAAAAAA CCATGCCCTTTGG GCT TTAAAGGACATGG TTTTTTAATTGTTGA Cthe_0081 112628 - 111423 - | N-acetylglutamate synthase / glutamate N-acetyltransferase TERM 111 111650 - 111640 - G 71 -6.8 -4.08394 | AGATTGGGGTCAAAA TCCG CAC CGGA ATAACCGACAGCCGT TERM 112 112551 - 112589 + g 71 -6.7 -4.08767 | overlap 112560 112561 GTCCTTTTTTTGGTT GTTTTTAAGCCCGCAGG CGACT CCTGCGGCTTTAAACCC TTTTGGGGCCGTAAC TERM 113 112561 - 112579 + g 81 -11.7 -2.76009 | overlap 112560 112551 TGGTTGTTTTTAAGC CCGCAGG CGACT CCTGCGG CTTTAAACCCTTTTG Cthe_0082 113271 - 115718 + | Lon-A peptidase TERM 114 115835 - 115883 + F 80 -10.6 -2.61484 | opp_overlap 115835 115845, overlap 115845 AAAACCAATGTAAAA TATACAAGAACAGCTGTTTTAC AAAAC GTAAGACGGCTGTTTTTTTATG TGAATTCATTAATGT TERM 115 115873 - 115845 - f 71 -6.7 -4.02733 | opp_overlap 115845 115835, overlap 115835 TAAAATATACAAGAA CAGCTGTTTTACA AAA CGTAAGACGGCTG TTTTTTTATGTGAAT TERM 116 115845 - 115873 + F 100 -10.4 -5.72616 | opp_overlap 115835 115845, overlap 115835 TAAAATATACAAGAA CAGCTGTTTTAC AAAAC GTAAGACGGCTG TTTTTTTATGTGAAT Cthe_0083 116031 - 117710 + | serine phosphatase Cthe_0084 118271 - 117726 - | hypothetical protein Cthe_0085 119241 - 118609 - | negative regulator of genetic competence TERM 117 119449 - 119437 - H 72 -3.4 -5.24449 | TACAAAGCGAAAAAA TCCT TCTTG AGGA TGAAAAAATAAGCTG TERM 118 119829 - 119811 - g 71 -6 -4.20042 | ATTAACATTTTAAAA GAAAATCG TGC CGAATTTC CCGGCCTTGGAGAAG Cthe_0086 119622 - 120506 + | hypothetical protein Cthe_0087 120774 - 121376 + | maf protein Cthe_0088 121454 - 122476 + | rod shape-determining protein MreB TERM 119 123043 - 123060 + G 71 -4.1 -4.83615 | TAAGTGCAAGAGTGT CCAAAAC AAGG GATTTGG TTTTTGTCAAAGGTG Cthe_0089 122493 - 123356 + | rod shape-determining protein MreC Cthe_0090 123353 - 123883 + | hypothetical protein TERM 120 124431 - 124420 - g 80 -4.4 -5.18561 | CAAAGATGGAAAAAA GACA TGGT TGTC AAGGCTGATGATATG Cthe_0091 123997 - 126126 + | peptidoglycan glycosyltransferase minC 126192 - 126875 + | septum formation inhibitor TERM 121 127782 - 127759 - g 74 -6 -4.42974 | gap 1 GTTACAGACAATAAA TCCGCA-GCCG GAG CGGCTTACAGA GCAATTACAAGAAGA Cthe_0093 127090 - 127890 + | septum site-determining protein MinD Cthe_0094 127904 - 128188 + | cell division topological specificity factor MinE Cthe_0095 128209 - 128604 + | methylglyoxal synthase TERM 122 128645 - 128619 - T 88 -7.3 -5.11112 | gap 1, opp_overlap 128623 AAATGGCAATAAAAA GGACTCCGGC GCAAAAAA GCCGG-GTCC TTACGGTGTTTGCTC Cthe_0096 128925 - 128662 - | hypothetical protein TERM 123 129289 - 129275 - g 73 -7.2 -4.08692 | opp_overlap 129275 129270 129266 129280 129281 TAACCTCGTTCAAAA GTTTGT GAT ACAAAC TGTCGTATGTGTCGT Cthe_0097 129156 - 130031 + | peptidase M23B Cthe_0098 130163 - 130972 + | peptidase M50 Cthe_0099 131911 - 131036 - | 5,10-methylenetetrahydrofolate reductase TERM 124 131484 - 131498 + g 73 -7.2 -4.0865 | GCTGCGGCGGCTATG CAGAAA TCA TTTCTG TTCTGTTTTCTTACA Cthe_0100 132322 - 133104 + | hypothetical protein TERM 125 133450 - 133476 + G 70 -3.6 -4.96848 | GCTATAGCAGTGGGA GTGCCGTATGAC GGC GACGTATGGGAC TTTTTCTGTGGCAAG Cthe_0101 133120 - 134289 + | iron-containing alcohol dehydrogenase TERM 126 134353 - 134380 + T 76 -3.4 -5.41143 | opp_overlap 134358, overlap 134358 GCGAAAATATATATG AAAAAGAGGACG TTTA TGTCCTCTTTAC TTTTTTTCAGCGATG TERM 127 134375 - 134358 - T 83 -7 -4.87037 | opp_overlap 134353 134358 AATATATATGAAAAA GAGGAC GTTTAT GTCCTC TTTACTTTTTTTCAG TERM 128 134358 - 134375 + T 82 -7.7 -4.5187 | opp_overlap 134358, overlap 134353 AATATATATGAAAAA GAGGACG TTTA TGTCCTC TTTACTTTTTTTCAG trmB 135033 - 134377 - | tRNA (guanine-N(7))-methyltransferase TERM 129 135002 - 134984 - G 85 -3.9 -5.67063 | gap 1 TTGATGACAAAAAAA CTGCA-TG CTTC CAGTGCAG GCCTTGCCCAAGGTT TERM 130 135004 - 135015 + g 89 -4.4 -5.60993 | TGCTTCCAGTGCAGG CCTT GCCC AAGG TTTTTTTCTCAGCCG Cthe_0103 135290 - 135682 + | hypothetical protein TERM 131 135955 - 135982 + F 74 -6.3 -4.43624 | gap 1, overlap 135974 TTGTTTGGAAGTGGC GCTCCC-TGGGA AGATA TCTCAAGGGGGC TTTGTTATATAGTTT TERM 132 136364 - 136338 - g 78 -10.8 -3.02745 | opp_overlap 136338, overlap 136320 136335 TGCAGCCATAAAGGA CCCCAACCCGAA GGT TTCGGGCAGAGG TTTTGAAATGCTTAA TERM 133 136338 - 136364 + G 71 -6.4 -4.17023 | opp_overlap 136320 136338 136335 TGCAGCCATAAAGGA CCCCAACCCGAA GGT TTCGGGCAGAGG TTTTGAAATGCTTAA Cthe_0104 136030 - 137127 + | 5-amino-6-(5-phosphoribosylamino)uracil reductase / diaminohydroxyphosphoribosylaminopyrimidine deaminase TERM 134 137292 - 137275 - g 70 -5.6 -4.44461 | AACAAGTCGATAAAA CTCACA ATAAAA TGTGAG AAAATTATGGATGAT Cthe_0105 137206 - 137862 + | riboflavin synthase subunit alpha TERM 135 138377 - 138355 - g 73 -7.6 -4.10657 | opp_overlap 138369 GTAGACTTTGCAAAA CTGGCAGGAC TTT ACCCTGCCGG GGTAATATGCGAAAT Cthe_0106 137902 - 139143 + | GTP cyclohydrolase II ribH 139133 - 139600 + | riboflavin synthase subunit beta TERM 136 139647 - 139602 - T 74 -7.1 -4.15197 | gap 1, opp_overlap 139612, overlap 139612 TAAAGATGATATAAA GACAACGTAAGAAGGGTCTT TGAAGAC AAGACCCTTCTTTT-TTGTC TGGCTTTACAGGTGG TERM 137 139638 - 139612 - T 85 -11 -3.31937 | opp_overlap 139612, overlap 139602 ATAAAGACAACGTAA GAAGGGTCTT TGAAGAC AAGACCCTTC TTTTTTGTCTGGCTT TERM 138 139612 - 139638 + T 100 -11 -5.38951 | opp_overlap 139612 139602 ATAAAGACAACGTAA GAAGGGTCTT TGAAGAC AAGACCCTTC TTTTTTGTCTGGCTT Cthe_0108 140333 - 139692 - | type IV pilus assembly PilZ TERM 139 140773 - 140798 + H 76 -7.1 -4.26589 | CAGGGTTCTGCCCGG GAAAATTTTGA CGAG TTAAAATTTTC TTTTAAATATATCCT TERM 140 140981 - 140940 - H 71 -8.4 -3.29461 | gap 1, opp_overlap 140940 140943, overlap 140944 140949 140962 TAACCCGCTCCAGAA TGTA-TATCAGGATAACTT TAAAC AAGTTATCCTGATAATAAA TTAATCCTTTATGAA TERM 141 140940 - 140981 + H 71 -8.4 -3.35467 | gap 1, opp_overlap 140940 140944 140949 140962, overlap 140943 TAACCCGCTCCAGAA TGTA-TATCAGGATAACTT TAAAC AAGTTATCCTGATAATAAA TTAATCCTTTATGAA TERM 142 140943 - 140977 + H 87 -11.7 -2.59482 | opp_overlap 140940 140944 140949 140962, overlap 140940 CCCGCTCCAGAATGT ATATCAGGATAACTT TAAAC AAGTTATCCTGATAA TAAATTAATCCTTTA TERM 143 140976 - 140944 - H 100 -15.2 -2.59431 | opp_overlap 140943 140940, overlap 140940 140949 140962 CCGCTCCAGAATGTA TATCAGGATAACTT TAAAC AAGTTATCCTGATA ATAAATTAATCCTTT TERM 144 140971 - 140949 - H 72 -9.3 -2.67705 | opp_overlap 140943 140940, overlap 140944 140940 140962 CCAGAATGTATATCA GGATAACTT TAAAC AAGTTATCC TGATAATAAATTAAT TERM 145 141128 - 141153 + H 100 -8.5 -5.9667 | gap 1, opp_overlap 141128 CCCGCTCCAATTGAA GTTATGTACGCA AAG TG-GTACATAAC TTTTTTTATATTTTT TERM 146 141153 - 141128 - H 72 -8.5 -3.17075 | gap 1, opp_overlap 141128 CCCGCTCCAATTGAA GTTATGTACGCA AAG TG-GTACATAAC TTTTTTTATATTTTT Cthe_0109 141502 - 141819 + | cellulosome enzyme, dockerin type I TERM 147 141865 - 141907 + F 79 -8.6 -3.91908 | opp_overlap 141874, overlap 141873 141874 AATTCAAAGTGAAAA TATATAAAAGGGATGGTGAA TAA TTTGCCATCCCGTTTTTGTA TCTTTTTAGCCATGT TERM 148 141873 - 141899 + F 93 -8 -5.20633 | opp_overlap 141874, overlap 141865 141874 GTGAAAATATATAAA AGGGATGGTGAA TAA TTTGCCATCCCG TTTTTGTATCTTTTT TERM 149 141874 - 141898 + F 93 -11.5 -3.6872 | opp_overlap 141874, overlap 141873 141865 TGAAAATATATAAAA GGGATGGTGAA TAA TTTGCCATCCC GTTTTTGTATCTTTT TERM 150 141898 - 141874 - f 86 -7.1 -4.78933 | opp_overlap 141873 141865 141874 TGAAAATATATAAAA GGGATGGTGAA TAA TTTGCCATCCC GTTTTTGTATCTTTT TERM 151 141954 - 141976 + F 78 -7 -4.41494 | opp_overlap 141954 141952, overlap 141956 ATATAATATAATAGA TTCCGGATGA TTT TAATCCGGGA TTTTGCTTGAAAATA Cthe_0110 142033 - 142989 + | HPr kinase Cthe_0111 143023 - 143748 + | putative hydrolase Cthe_0112 143858 - 144775 + | UDP-N-acetylmuramate dehydrogenase Cthe_0113 144814 - 145689 + | hypothetical protein TERM 152 145723 - 145737 + G 74 -6.4 -4.42667 | GAAAAAAAATTGCAG GATACC GAT GGTGTC TTTTGATCGTTTTCG TERM 153 146613 - 146601 - g 90 -4.9 -5.626 | GATGCGATAAAAAAA TCAAA GGC TTTGA AAATATATGTGTGCA Cthe_0114 145686 - 147005 + | hypothetical protein TERM 154 147388 - 147401 + G 73 -8.1 -3.93216 | AATATGCATGGTTTA CGGTG AAAA CACCG TTGTTGTGGTTTACC TERM 155 147987 - 148002 + G 75 -8.2 -4.11216 | CTCTTGCGGGACTTA CGCTGG CAAC CCGGCG TTTTGAGGATGCAAA Cthe_0115 147032 - 149011 + | glycogen debranching enzyme, putative TERM 156 149552 - 149531 - g 76 -4.5 -5.03314 | GCGATCCTGAAAAAA CATATCATC TGGA GATAACATG CCACAATATGGCTTT Cthe_0116 149095 - 150039 + | hypothetical protein Cthe_0117 150036 - 150308 + | HPrNtr domain-containing protein TERM 157 150340 - 150395 + F 72 -5.9 -4.36993 | gap 2 ATAAAATAGAGAATA TCGACAAACCATAT--AAGATTGGCAT TTTA GTGTTGATTTTTGATATGGTTTGTCGA TATTTTTTTGGCCTT TERM 158 150613 - 150638 + G 77 -6.2 -4.59853 | opp_overlap 150613, overlap 150632 GCTGAAATGATGAAA TCCACAACCA AAAACA TGGTTTTGGA TTTTTCGAAAGTTAC Cthe_0118 150499 - 150834 + | anti-sigma-factor antagonist TERM 159 151152 - 151123 - g 80 -6.3 -4.69028 | opp_overlap 151144 AGAAGATATAGAAAA GGCCCGGCAGCCT ATGT ATACTTCCAGGCC TGACATGGAAAGGTC Cthe_0119 150848 - 151297 + | anti-sigma F factor Cthe_0120 151334 - 152074 + | RNA polymerase, sigma 28 subunit TERM 160 152134 - 152153 + F 100 -5.8 -6.25578 | opp_overlap 152134 TGATGCTATATAAAG CAATATGT TCCT GCATATTG TTTTTTTTATTTCCT TERM 161 152358 - 152384 + G 71 -5.2 -4.60487 | opp_overlap 152364, overlap 152359 152364 TTGTGCAAAAACCTG AGAAAGTTCCTT CAA GAGGAATTTTCG TTTTTGAGAATACTA TERM 162 152359 - 152383 + G 70 -8.7 -3.3581 | opp_overlap 152364, overlap 152358 152364 TGTGCAAAAACCTGA GAAAGTTCCTT CAA GAGGAATTTTC GTTTTTGAGAATACT TERM 163 152364 - 152378 + G 74 -5 -4.77757 | opp_overlap 152364, overlap 152359 152358 AAAAACCTGAGAAAG TTCCTT CAA GAGGAA TTTTCGTTTTTGAGA Cthe_0121 152189 - 152446 + | hypothetical protein Cthe_0122 152466 - 152909 + | SpoVA protein TERM 164 153269 - 153279 + G 85 -6.8 -5.08169 | opp_overlap 153268, overlap 153264 TCGGACTCAGGGAAT CGGA TGT TCCG TTTTTTGGAGTGTAT Cthe_0123 152968 - 153990 + | stage V sporulation protein AD Cthe_0124 154049 - 154405 + | SpoVA protein Cthe_0125 154482 - 155045 + | stage V sporulation AE Cthe_0126 155120 - 155584 + | CheC-like protein TERM 165 155600 - 155654 + F 100 -14.6 -3.34398 | opp_overlap 155605 155607, overlap 155605 155607 CCTTTTTGCATAATT TAAAATAGAGCATAGCAGAGTTTGCT GAA AACAAGTTCTGCCGTGCTCTGTTTTA TGTTTGGAGCAAAAG TERM 166 155605 - 155649 + F 100 -10.1 -4.78848 | opp_overlap 155605 155607, overlap 155600 155607 TTGCATAATTTAAAA TAGAGCATAGCAGAGTTTGCT GAA AACAAGTTCTGCCGTGCTCTG TTTTATGTTTGGAGC TERM 167 155607 - 155647 + F 91 -10.5 -4.00843 | opp_overlap 155605 155607, overlap 155605 155600 GCATAATTTAAAATA GAGCATAGCAGAGTTTGCT GAA AACAAGTTCTGCCGTGCTC TGTTTTATGTTTGGA TERM 168 155647 - 155607 - f 75 -8.3 -3.76167 | opp_overlap 155607 155605 155600, overlap 155605 GCATAATTTAAAATA GAGCATAGCAGAGTTTGCT GAA AACAAGTTCTGCCGTGCTC TGTTTTATGTTTGGA Cthe_0127 155714 - 156208 + | RNA methyltransferase Cthe_0128 156451 - 157563 + | integrase catalytic subunit Cthe_0129 157782 - 159299 + | metal dependent phosphohydrolase Cthe_0130 159504 - 160538 + | 3-oxoacyl-(acyl-carrier-protein) synthase Cthe_0131 160651 - 160896 + | hypothetical protein TERM 169 161902 - 161890 - g 71 -4.9 -4.50058 | GAGGCACAAGTAAAA GAATT GGG AATTC CCTTTGAAAAGAGCC Cthe_0132 161038 - 162075 + | 3-oxoacyl-(acyl-carrier-protein) synthase Cthe_0133 162114 - 163598 + | AMP-dependent synthetase and ligase Cthe_0134 163619 - 164590 + | hypothetical protein TERM 170 165910 - 165891 - g 71 -4.2 -4.87592 | overlap 165892 CCATATACAACAAAA TTCTGCCG CCTA CGGCAAAC ATTGAGAAAATCAAT TERM 171 166159 - 166129 - g 73 -5.4 -4.63527 | opp_overlap 166135, overlap 166130 166131 166133 TGAGGATGCCAAAAA TGCAGACAATGCAC AAA ATGCACTGTCTGTG ACGCAGGAAGTTGTA TERM 172 166158 - 166130 - g 72 -8.9 -3.37634 | opp_overlap 166135, overlap 166129 166131 166133 GAGGATGCCAAAAAT GCAGACAATGCAC AAA ATGCACTGTCTGT GACGCAGGAAGTTGT TERM 173 166157 - 166131 - g 83 -12.4 -2.62098 | opp_overlap 166135, overlap 166130 166129 166133 AGGATGCCAAAAATG CAGACAATGCAC AAA ATGCACTGTCTG TGACGCAGGAAGTTG TERM 174 169140 - 169111 - g 72 -10.1 -2.73364 | opp_overlap 169088 TTCCCAGGGCAACTA TCACCTTCTACAA AAAA TTGCGGAAGGTGA CAGGAGAATTTTGGA TERM 175 170367 - 170357 - g 81 -5.4 -5.03314 | opp_overlap 170357 GGCAGTTTCAAAAAA GAAG AAC CTTC TTTCGAGGATGCCAA TERM 176 171864 - 171845 - g 71 -9.4 -2.91395 | overlap 171844 171847 ATGGCCTGGAGAAAT GAGTTTGT AAAA ACAAACTC TGAGGAAATGGGTCT TERM 177 172515 - 172495 - g 73 -8.4 -3.66908 | opp_overlap 172491 172490, overlap 172491 CTTGTTGAAAAGGAA CCCAAATT CCATC AATTTGGG AACCCTGTTCATTGA TERM 178 172692 - 172706 + G 70 -8.6 -3.36655 | TTTGCGGGGTACATT CACTGT ATA ACAGTG TTGATGTATATCTGC Cthe_0135 164639 - 172903 + | beta-ketoacyl synthase TERM 179 173210 - 173236 + G 85 -11.6 -3.37474 | opp_overlap 173215, overlap 173215 GTTGCCTGGATGTGC TCAAAGGGGCTG ATT CGGCCCCTTTCA TTCTCCAGTATTCTG TERM 180 173215 - 173231 + G 90 -11.5 -4.00124 | opp_overlap 173215, overlap 173210 CTGGATGTGCTCAAA GGGGCTG ATT CGGCCCC TTTCATTCTCCAGTA TERM 181 173231 - 173215 - g 74 -9.3 -3.54424 | opp_overlap 173210 173215 CTGGATGTGCTCAAA GGGGCTG ATT CGGCCCC TTTCATTCTCCAGTA TERM 182 173595 - 173609 + G 77 -7.8 -4.2679 | overlap 173596 TAATTACTGTATCTC TCTGGC ATT GCCAGG TTTTAATAAAGATTA TERM 183 173596 - 173608 + G 70 -9.1 -3.15592 | overlap 173595 AATTACTGTATCTCT CTGGC ATT GCCAG GTTTTAATAAAGATT Cthe_0136 172900 - 173625 + | 4'-phosphopantetheinyl transferase TERM 184 173672 - 173650 - f 100 -7.8 -6.02919 | CTAGAAATAAAAAAA TTGTCCATAA TAT TAATGGACAA AAAAACAAAGAATTA Cthe_0137 173889 - 174899 + | glyceraldehyde-3-phosphate dehydrogenase TERM 185 174906 - 174956 + F 95 -11.5 -3.90744 | gap 1, opp_overlap 174922, overlap 174922 GCAAAATAATTATAG CTTTAAATACAAAAAAGGTTCGGT TAAA ACCGGGCC-TTTTTGAATTTAAGG TTCTTTGCAGAAAGA TERM 186 174922 - 174941 + F 87 -7.8 -4.81249 | opp_overlap 174922, overlap 174906 TTTAAATACAAAAAA GGTTCGGT TAAA ACCGGGCC TTTTTGAATTTAAGG TERM 187 174941 - 174922 - f 79 -3.4 -5.56264 | opp_overlap 174922 174906 TTTAAATACAAAAAA GGTTCGGT TAAA ACCGGGCC TTTTTGAATTTAAGG pgk 175233 - 176426 + | phosphoglycerate kinase Cthe_0139 176441 - 177196 + | triosephosphate isomerase TERM 188 177240 - 177276 + F 77 -8.1 -3.76775 | opp_overlap 177245, overlap 177245 TTTGTACAGTTTATA TAAAACAGTCCCGCCAA AAA TTAAAGGGACTGTTTTA TTTAACTATATTCAA TERM 189 177271 - 177245 - f 85 -8 -4.54449 | opp_overlap 177245 177240 ACAGTTTATATAAAA CAGTCCCGCCAA AAA TTAAAGGGACTG TTTTATTTAACTATA Cthe_0140 177383 - 178918 + | phosphoglyceromutase TERM 190 178986 - 178967 - f 100 -12.2 -4.26622 | opp_overlap 178967 AAATTATACCCAAAA CTTCGGCA TTAC TGCCGAAG TTTTTTATTTGTGCT TERM 191 178967 - 178986 + F 100 -12.2 -5.73978 | opp_overlap 178967 AAATTATACCCAAAA CTTCGGCA TTAC TGCCGAAG TTTTTTATTTGTGCT Cthe_0141 179092 - 180204 + | integrase catalytic subunit TERM 192 180754 - 180764 + G 74 -4.6 -4.91109 | TACTAATGGTTTGGC GGCG ATG CGTC TTTTTGTCATAGCCA TERM 193 181290 - 181278 - g 71 -4.9 -4.64763 | TGATTCAAAAAATAA GAAAA GAA TTTTC AGACTTTTTGGACAC Cthe_0142 180470 - 182107 + | metal dependent phosphohydrolase TERM 194 183322 - 183291 - g 85 -6.7 -5.13473 | opp_overlap 183292, overlap 183292 ACCAGACTTAAAAAA GGTATAGAATTGG GAGTTG CCAATTCCATACT TATTAAAGTAAACCA TERM 195 183321 - 183292 - g 80 -10.2 -3.66999 | opp_overlap 183292, overlap 183291 CCAGACTTAAAAAAG GTATAGAATTGG GAGTTG CCAATTCCATAC TTATTAAAGTAAACC TERM 196 183292 - 183321 + G 70 -8 -3.65046 | opp_overlap 183292 183291 CCAGACTTAAAAAAG GTATAGAATTGG GAGTTG CCAATTCCATAC TTATTAAAGTAAACC Cthe_0143 182307 - 183608 + | enolase Cthe_0144 183772 - 184023 + | preprotein translocase, SecG subunit TERM 197 184037 - 184061 + F 100 -9.4 -5.56112 | opp_overlap 184037 AAGACAATTGAAAAA GGAAACTGTA TTATT TGCAGTTTCC TTTTTTGCTTTTTGT TERM 198 184061 - 184037 - f 86 -7.2 -4.8066 | opp_overlap 184037 AAGACAATTGAAAAA GGAAACTGTA TTATT TGCAGTTTCC TTTTTTGCTTTTTGT Cthe_0145 184305 - 184856 + | metal dependent phosphohydrolase TERM 199 184898 - 184917 + F 85 -5 -5.63517 | opp_overlap 184891 CAATACCATAAAAAA CCAGGGTT TAAC AATCTTGG TTTTTTATTTGACCG TERM 200 185019 - 185036 + F 79 -8.5 -3.88787 | opp_overlap 185018 185016 185031 AGAAGGAGGGAACAC GCTGTAT AAAA ATACAGC TTTGTAAAAATATGA TERM 201 185237 - 185221 - g 73 -2.2 -5.2166 | TAAGAACCGAAAAAA CAGGTA TGGAG TTCCTG AAAGAATGAATCTTG TERM 202 185469 - 185445 - g 80 -6.4 -4.6856 | opp_overlap 185445, overlap 185447 TAAAGATTGTAAAAA GGGCCAACAA GACCG TTGTCGGCAC GTTTGAAAGCAGCAA TERM 203 187276 - 187248 - g 93 -10.3 -4.91511 | opp_overlap 187256 AGCGCAGGAGAAAAA CACCTGATGAAGC CGT GCTTCTTCATGTG CAGGGTAAAAAGAAA Cthe_0146 185048 - 187321 + | ribonuclease R Cthe_0147 187366 - 187797 + | hypothetical protein TERM 204 187894 - 187916 + F 100 -13.6 -2.71731 | opp_overlap 187882 GGATGACGATTATGA GGAGGTAAAA TGC TTTTACCTCC TCATTAAAGACTGAG TERM 205 188493 - 188505 + G 73 -7.7 -3.90586 | opp_overlap 188493 188492 GAGTGGCAGAAAAGG CCTCT GGG AGAGG TTTATCCGATAGTAT Cthe_0148 188004 - 189227 + | transposase, mutator type TERM 206 189274 - 189233 - T 73 -8.2 -3.49777 | opp_overlap 189228 189234 189235, overlap 189237 GCGTATATAGTATAA TCA-AGGGGTTCAGGGAAAC TCTG GTTTCC-TGAACCCCCCTGT AATATTTTATACGCA TERM 207 189234 - 189273 + T 83 -10.8 -2.98387 | gap 1, opp_overlap 189233 189237, overlap 189228 189235 CGTATATAGTATAAT CA-AGGGGTTCAGGGAAAC TCT GGTTTCCTGAACCCCCCTG TAATATTTTATACGC TERM 208 189235 - 189271 + T 81 -10.1 -3.03972 | opp_overlap 189233 189237, overlap 189234 189228 GTATATAGTATAATC AAGGGGTTCAGGGAAAC TCT GGTTTCCTGAACCCCCC TGTAATATTTTATAC TERM 209 189269 - 189237 - T 100 -15.8 -3.49182 | gap 1, opp_overlap 189235 189234 189228, overlap 189233 ATATAGTATAATCAA GGGGTTCAGGGAAAC TCTG GTTTCC-TGAACCCC CCTGTAATATTTTAT TERM 210 189318 - 189337 + T 83 -8 -4.26188 | opp_overlap 189321, overlap 189307 ATTTTTCTTTTGTAA GAATTTCT TATC AGAAATTC TTTTGAATCTATAAA TERM 211 189448 - 189470 + T 100 -13.6 -2.72049 | opp_overlap 189432 189431 TACACTGCCTTATGA GGAGGTAAAA TGC TTTTACCTCC TCATTAAAGACTATA Cthe_0149 189738 - 189481 - | HPrNtr domain-containing protein TERM 212 190166 - 190148 - g 79 -8.9 -3.85362 | AATCGAAGGAGTAAA CTTGGTC GTGGG GACCAAG GACCGAAGCAGGATT Cthe_0150 189867 - 191171 + | RNA modification protein Cthe_0151 191386 - 191658 + | hypothetical protein TERM 213 191672 - 191648 - f 79 -10.1 -2.95204 | opp_overlap 191649, overlap 191647 GTATCGGCAAAGAAG GCTCCGTATAA TTA TTATACGGAGT TTTTTATAATATTTC TERM 214 191649 - 191671 + F 100 -13.6 -5.38321 | opp_overlap 191648 191647 TATCGGCAAAGAAGG CTCCGTATAA TTA TTATACGGAG TTTTTTATAATATTT Cthe_0152 191736 - 192683 + | aldo/keto reductase TERM 215 192707 - 192685 - f 75 -8 -3.65353 | opp_overlap 192685, overlap 192693 192696 TCAAAGTATCGTAAA TTATAAAATT ATA AATTTTATAA ACTTAAAACTGTAAA TERM 216 192731 - 192716 - f 74 -6.2 -4.39571 | opp_overlap 192725, overlap 192725 TTTATAAACTTAAAA CTGTAA AAAT TTACAG GGTAAATTTACGTGG TERM 217 192737 - 192725 - f 72 -4.9 -4.7416 | opp_overlap 192725, overlap 192716 TTAAAACTGTAAAAA TTTAC AGG GTAAA TTTACGTGGCACTGA Cthe_0153 192805 - 193230 + | Holliday junction resolvase YqgF Cthe_0154 193333 - 193623 + | hypothetical protein TERM 218 193641 - 193629 - f 82 -2.6 -5.97979 | opp_overlap 193637, overlap 193630 193632 193637 AGAAGAATAAAAAAA GGAG GACAT CCCC GAATCTGGTGTTGAA TERM 219 193637 - 193672 + F 91 -10.6 -4.04174 | gap 1, opp_overlap 193629 193630 193637 193632 AAAAAAAGGAGGACA TCCCCGAATCTGGTGTT GAA AAT-TCAGGTTCGGGGA TTTGCTTGTATGAAA Cthe_0155 193793 - 194854 + | hypothetical protein TERM 220 195804 - 195818 + G 73 -5.7 -4.65895 | opp_overlap 195804 195803 AAAAGGATTATAAAG GACCT GGACA AGGTC TTTTTCCCTGAAAAA Cthe_0156 195093 - 196934 + | radical SAM family protein TERM 221 197558 - 197572 + G 70 -3.4 -4.89567 | opp_overlap 197541 197560 ATTTGTTTAAACAAA CGGACG AAT CGGCTG TTTTCTGTTTTACAA Cthe_0157 196924 - 197763 + | hypothetical protein Cthe_0158 197773 - 199266 + | ribonuclease G Cthe_0159 199274 - 200386 + | integrase catalytic subunit rplU 200612 - 200923 + | 50S ribosomal protein L21 Cthe_0161 200936 - 201277 + | hypothetical protein rpmA 201270 - 201548 + | 50S ribosomal protein L27 TERM 222 201591 - 201553 - f 95 -9.3 -5.24129 | gap 2, opp_overlap 201560 201561, overlap 201558 201561 201565 TTCCTGCATAAAAAA TAAAATTATAAATCCCGGT TTT ACCGGGA-TT-TAATTTTA TGATTTGTGCAATAC TERM 223 201587 - 201558 - f 100 -7.3 -5.49579 | gap 1, opp_overlap 201560 201561, overlap 201553 201561 201565 GCATAAAAAATAAAA TTATAAATCCCGGT TTT ACCGGGATTTA-AT TTTATGATTTGTGCA TERM 224 201560 - 201586 + F 100 -12.4 -4.64846 | opp_overlap 201558 201553 201561 201565, overlap 201561 ATAAAAAATAAAATT ATAAATCCCGGT TTT ACCGGGATTTAA TTTTATGATTTGTGC TERM 225 201561 - 201585 + F 100 -15.9 -3.37823 | opp_overlap 201558 201553 201561 201565, overlap 201560 TAAAAAATAAAATTA TAAATCCCGGT TTT ACCGGGATTTA ATTTTATGATTTGTG TERM 226 201585 - 201561 - f 100 -15.9 -3.47289 | opp_overlap 201561 201560, overlap 201558 201553 201565 TAAAAAATAAAATTA TAAATCCCGGT TTT ACCGGGATTTA ATTTTATGATTTGTG TERM 227 201581 - 201565 - f 100 -12.3 -4.27846 | opp_overlap 201561 201560, overlap 201561 201558 201553 AAATAAAATTATAAA TCCCGGT TTT ACCGGGA TTTAATTTTATGATT TERM 228 201701 - 201690 - g 81 -7.2 -4.65446 | AGGATATATATAAAA GCCG GGGA CGGC GGAGACGGCGCGATA TERM 229 201934 - 201920 - g 70 -5.6 -4.32579 | opp_overlap 201920, overlap 201922 AGATTTGATAATAAA GGTCCC TCC GGGAAC TTTGGTAAAGGATGA Cthe_0163 201657 - 202931 + | GTP1/OBG subdomain-containing protein TERM 230 203275 - 203304 + F 91 -9.4 -4.4518 | opp_overlap 203278, overlap 203278 AGCATACTAAGACAT GAATGGGGATAG GGTCAA CTATCCCCATTA TTTTAAATTTTAGTT TERM 231 203278 - 203301 + F 100 -11.1 -4.31549 | opp_overlap 203278, overlap 203275 ATACTAAGACATGAA TGGGGATAG GGTCAA CTATCCCCA TTATTTTAAATTTTA TERM 232 203301 - 203278 - f 87 -11.1 -3.39353 | opp_overlap 203278 203275 ATACTAAGACATGAA TGGGGATAG GGTCAA CTATCCCCA TTATTTTAAATTTTA Cthe_0164 203363 - 203653 + | hypothetical protein TERM 233 203723 - 203705 - T 80 -7.4 -4.69027 | AAAGTTATGTAAAAA GAGCCC GGTTAAA GGGCTC AACATACCAACAAAG Cthe_0165 204296 - 203739 - | hypothetical protein Cthe_0166 204604 - 205284 + | 4Fe-4S ferredoxin, iron-sulfur binding Cthe_0167 205322 - 205690 + | response regulator receiver protein Cthe_0168 205743 - 206213 + | hypothetical protein Cthe_0169 207307 - 206225 - | dehydrogenase (flavoproteins) TERM 234 207039 - 207081 + g 78 -10.7 -3.06315 | opp_overlap 207037 207039 AAAAAACCAAAATTA CCCTTAATCACTGTTTTCC TGTTT GGAGAATAGTGTGTAAGGG TGTTAACGGTGTTGA Cthe_0170 207871 - 207398 - | hypothetical protein Cthe_0171 208136 - 207897 - | hypothetical protein Cthe_0172 208405 - 208163 - | hypothetical protein TERM 235 208565 - 208592 + G 73 -7 -4.27316 | gap 1, overlap 208568 AGATTGCCATAATTG GTGCAGGACTGGC CGG GCT-GTCCTGTGC TTTTGAATTGGAGAG TERM 236 208623 - 208611 - g 71 -6.9 -4.06491 | opp_overlap 208610 208611 208616 TGAATTGGAGAGAAA CGGCA TAA CGCCG GTTATTTTTGAGAAA TERM 237 209094 - 209106 + G 70 -3.3 -4.9725 | opp_overlap 209095, overlap 209095 CCGGGATTATGACAA AGCGT GCT ACGCA TTTTTGTCTCCCCAT TERM 238 209105 - 209095 - g 71 -6.8 -3.99324 | opp_overlap 209095 209094 CGGGATTATGACAAA GCGT GCT ACGC ATTTTTGTCTCCCCA Cthe_0173 208546 - 209640 + | dehydrogenase (flavoproteins) TERM 239 210577 - 210559 - g 71 -3.8 -4.96435 | TGAAGAAAAAAACAA GGAAAAAG CCG CACTTTCC AATAGATTTAAGGGA Cthe_0174 209822 - 211714 + | sulfatase TERM 240 212157 - 212169 + G 74 -4.9 -4.7268 | GCAAAATAATGGTTG TTATG TTC CATAA TTTTGTTGAGTCTTT Cthe_0175 211898 - 213034 + | polysaccharide deacetylase TERM 241 213061 - 213096 + F 93 -6.2 -5.64873 | opp_overlap 213071, overlap 213064 213066 213071 CGATTTTAATGAATA TGGAGCAAAAGGGACT TGGC GGTCCCTTTTGTATTA TTTTTTCTTATTAAG TERM 242 213064 - 213093 + F 87 -7.9 -4.86954 | opp_overlap 213071, overlap 213061 213066 213071 TTTTAATGAATATGG AGCAAAAGGGACT TGGC GGTCCCTTTTGTA TTATTTTTTCTTATT TERM 243 213066 - 213091 + F 100 -12.7 -4.00001 | opp_overlap 213071, overlap 213064 213061 213071 TTAATGAATATGGAG CAAAAGGGACT TGGC GGTCCCTTTTG TATTATTTTTTCTTA TERM 244 213086 - 213071 - f 70 -6.1 -4.30809 | opp_overlap 213066 213064 213061 213071 GAATATGGAGCAAAA GGGAC TTGGCG GTCCC TTTTGTATTATTTTT TERM 245 213071 - 213086 + F 83 -6.8 -4.90321 | opp_overlap 213071, overlap 213066 213064 213061 GAATATGGAGCAAAA GGGACT TGGC GGTCCC TTTTGTATTATTTTT Cthe_0176 213315 - 213665 + | hypothetical protein TERM 246 213664 - 213695 + F 95 -10.3 -4.21787 | opp_overlap 213660 213669, overlap 213669 AAGTAAAGAAATATT AAAAATAGTCCGG TATTGC CCGGACTATTTTA TTTTGCAAATTTTTT TERM 247 213690 - 213669 - f 100 -10.2 -4.97461 | opp_overlap 213664 213669, overlap 213660 AAGAAATATTAAAAA TAGTCCGG TATTGC CCGGACTA TTTTATTTTGCAAAT TERM 248 213669 - 213690 + F 100 -10.2 -5.08255 | opp_overlap 213660 213669, overlap 213664 AAGAAATATTAAAAA TAGTCCGG TATTGC CCGGACTA TTTTATTTTGCAAAT Cthe_0177 213836 - 214033 + | hypothetical protein Cthe_0178 215535 - 214159 - | argininosuccinate lyase TERM 249 214387 - 214407 + g 70 -2.5 -5.0133 | opp_overlap 214404, overlap 214391 214406 CCCGATAATTTCATG GGCGTTTCT GAA AGGAATACC TTTTTTAACAAGGTA TERM 250 214768 - 214750 - G 74 -6 -4.3295 | overlap 214751 TTCAATAAAACCAAA CTCATGGG AGG CCCATAAA ATGATTTCTTCACTG TERM 251 215253 - 215267 + g 70 -2.8 -5.055 | overlap 215255 TTCCCACATCCCCGA TTCTCG ATA TGAGGA TTTTTTCAACGTTCA TERM 252 215488 - 215503 + g 79 -3.2 -5.45726 | opp_overlap 215458, overlap 215490 TGAATTAAAATCATC CACCGA TTTG TCGGTA TTTTTTTCAAATCTA TERM 253 215490 - 215501 + g 70 -5.8 -4.36089 | opp_overlap 215458, overlap 215488 AATTAAAATCATCCA CCGA TTTG TCGG TATTTTTTTCAAATC Cthe_0179 216762 - 215545 - | argininosuccinate synthase TERM 254 217121 - 217136 + G 74 -6.2 -4.37658 | AGCTCAATGGAGCTT CCAAAA AGGC TTTTGG TTTTATACAACGGTT TERM 255 217238 - 217227 - g 93 -7.2 -5.38398 | opp_overlap 217229 ATAAAAATATAAAAA CGGC TCTT GCCG TGGGGCATGGAAGAG Cthe_0180 216998 - 217486 + | crossover junction endodeoxyribonuclease RuvC TERM 256 218147 - 218113 - g 77 -5.1 -4.95876 | gap 1, opp_overlap 218123 AACGATAATTAAAAA TGCTC-TTAAAGGACT GGCA AGACCTTAAATGAGCA TTAAGCAGCGGTCAA Cthe_0181 217532 - 218140 + | Holliday junction DNA helicase subunit RuvA ruvB 218239 - 219231 + | Holliday junction DNA helicase B Cthe_0183 219300 - 219845 + | hypothetical protein Cthe_0184 219986 - 221089 + | type IV pilus assembly protein PilM TERM 257 221129 - 221149 + F 100 -11.2 -4.57882 | opp_overlap 221129 GTCCGATACTTGAAA GGAAGCCT TACAC AGGCTTCC TTTGTTATTGTTGCA TERM 258 221149 - 221129 - f 89 -11.2 -3.63627 | opp_overlap 221129 GTCCGATACTTGAAA GGAAGCCT TACAC AGGCTTCC TTTGTTATTGTTGCA Cthe_0185 221399 - 224245 + | cell wall hydrolase/autolysin TERM 259 224277 - 224301 + F 90 -5.7 -5.56673 | ATGAAACAAAGAAAA GAAGGTGGTGT AAA AAACTGCCTTC TTTTTTATTATCCCT TERM 260 224585 - 224565 - g 79 -6.8 -4.63542 | overlap 224555 224566 GATAACCTTGAAAAA GGCCACAG GGATG CTGTGGCA GGAGCGAAACTTATT TERM 261 224584 - 224566 - g 77 -10.3 -3.37402 | overlap 224565 ATAACCTTGAAAAAG GCCACAG GGATG CTGTGGC AGGAGCGAAACTTAT TERM 262 225231 - 225215 - g 77 -9.5 -3.58533 | TTACAATCTTGGAAA CGGAAAA GGT TTTTCCG TAAAAGAGGTTATTG Cthe_0186 224385 - 225449 + | UDP-galactose 4-epimerase Cthe_0187 225552 - 226724 + | hypothetical protein TERM 263 226865 - 226876 + GF 72 -5.8 -4.42238 | opp_overlap 226863 226861 ACTATATCAAGCACG CCGA GGGC TCGG TTTTGATTGAGATGG TERM 264 227280 - 227252 - gf 73 -2.4 -5.1925 | gap 1, opp_overlap 227254, overlap 227254 GCATAATTGAAAAAA TACCGGTGACCGA CTTT TTGG-CAGCGGTA AGTGTCGGTATTGTA Cthe_0188 226792 - 227583 + | ribonuclease PH TERM 265 227999 - 228009 + GF 89 -6.8 -5.20735 | GGCGACAATGGCTTT GGGT ATG ACCC TTTGTTTTTTATTCC Cthe_0189 227540 - 228139 + | RdgB/HAM1 family non-canonical purine NTP pyrophosphatase TERM 266 228266 - 228244 - f 82 -7.7 -4.37544 | opp_overlap 228244 TTATAATAATAGAAA GGCTGTTGC AAAAA GCAATAGCC TTTTGTTTGATTCTT TERM 267 228244 - 228266 + F 100 -9.9 -5.03713 | opp_overlap 228244 TTATAATAATAGAAA GGCTGTTGC AAAAA GCAATAGCC TTTTGTTTGATTCTT Cthe_0190 228556 - 230358 + | proteinase inhibitor I4, serpin TERM 268 230386 - 230420 + F 100 -15.3 -4.13244 | opp_overlap 230386 GTATGCAATATAAAA TGGGCTGTTTCAAAA TAGAT TTTTGAAATAGCCCA TTGTTGTTGTTCTGA TERM 269 230420 - 230386 - f 100 -13.1 -4.68724 | opp_overlap 230386 GTATGCAATATAAAA TGGGCTGTTTCAAAA TAGAT TTTTGAAATAGCCCA TTGTTGTTGTTCTGA TERM 270 230470 - 230441 - f 77 -8.7 -3.63744 | opp_overlap 230447, overlap 230447 GTTGTTCTGAAAATA CAAAAAGCAGGCT TTTA AACCTGCTTTTTT GCTTGCATACTTAAT TERM 271 230464 - 230447 - f 91 -7.7 -5.28983 | opp_overlap 230447, overlap 230441 CTGAAAATACAAAAA GCAGGCT TTTA AACCTGC TTTTTTGCTTGCATA TERM 272 230447 - 230464 + F 80 -5.5 -5.28481 | opp_overlap 230441 230447 CTGAAAATACAAAAA GCAGGCT TTTA AACCTGC TTTTTTGCTTGCATA Cthe_0191 230789 - 232588 + | proteinase inhibitor I4, serpin TERM 273 232640 - 232656 + F 81 -4.3 -5.34381 | opp_overlap 232627, overlap 232642 AATCCCCACTTTGTT TTCCCTC TAC GTGGGGA TTTTTCTTTGAATTT TERM 274 233467 - 233457 - g 74 -4.6 -4.90013 | opp_overlap 233457 TAACTGAACGAAAAA CCCG CTA CGAG TTATTGTTTCTTTTG Cthe_0192 232808 - 233878 + | integrase catalytic subunit TERM 275 234382 - 234358 - f 100 -10.8 -4.1822 | gap 1, opp_overlap 234358 GGGCAGGCCAAGAAA CCCTAG-AGGC GAGA GCCTTCTAGGG TTTTTTCTTGAAAAA TERM 276 234358 - 234382 + F 100 -10.8 -5.4505 | gap 1, opp_overlap 234358 GGGCAGGCCAAGAAA CCCTAG-AGGC GAGA GCCTTCTAGGG TTTTTTCTTGAAAAA TERM 277 234451 - 234436 - f 72 -4.7 -4.77719 | TAAAATTGAATAAAA GGTGA TGGAGT TCACC TGAAATGCGTAATGC TERM 278 234473 - 234507 + F 100 -11.6 -5.5604 | GCGTAATGCTGATGA CTCCTACAGGAATAAT AAT ACTGTTTCTGTAGGAG TTTTTTGTTACTTGG TERM 279 234984 - 234961 - g 75 -2.5 -5.22258 | opp_overlap 234961 TAAATGAAAATAAAA TTGGTAC AAAAAAAGGA GTACCAA CTTTGATATTGGCAG Cthe_0193 234540 - 235724 + | sodium/hydrogen exchanger Cthe_0194 235814 - 236197 + | hypothetical protein TERM 280 236647 - 236637 - g 71 -6.8 -4.13767 | GTTGTTACTGGAAAA GGCT GGA AGCC TAAAAGAAATTCTGC Cthe_0195 236620 - 236913 + | ECF subfamily RNA polymerase sigma-24 factor TERM 281 236953 - 236926 - T 100 -12.8 -4.32177 | opp_overlap 236926 236929, overlap 236929 TGATTTTATAAGAAA TGACCACTCTGC AATG GCAGAGTGGTTA TAATATACAGAGTGG TERM 282 236926 - 236953 + T 100 -15 -2.62616 | opp_overlap 236926 236929, overlap 236929 TGATTTTATAAGAAA TGACCACTCTGC AATG GCAGAGTGGTTA TAATATACAGAGTGG TERM 283 236950 - 236929 - T 100 -14.5 -3.15008 | opp_overlap 236926 236929, overlap 236926 TTTTATAAGAAATGA CCACTCTGC AATG GCAGAGTGG TTATAATATACAGAG TERM 284 236929 - 236950 + T 100 -14.5 -3.46602 | opp_overlap 236929 236926, overlap 236926 TTTTATAAGAAATGA CCACTCTGC AATG GCAGAGTGG TTATAATATACAGAG TERM 285 237054 - 237019 - T 95 -10.6 -4.29981 | opp_overlap 237019 237052 TAAATATAGCTAAAA GGCGTGCAATCTAT TTTTAACG ATAGACTACACGCC TTTGTGAGGCTTAAT Cthe_0196 239164 - 237071 - | glutamine synthetase, catalytic region TERM 286 239405 - 239366 - H 84 -3.6 -5.75342 | gap 1, opp_overlap 239370 239373, overlap 239370 CCCTTTCAAAAAAAA TTAAGACGCCAATGAGCTT TTT AAGCCCA-TAGCGCCTTTG CTTTATATGTGTAGT TERM 287 239401 - 239370 - H 82 -8.8 -4.1299 | gap 1, opp_overlap 239370 239373, overlap 239366 TTCAAAAAAAATTAA GACGCCAATGAGCTT TTT AAGCCCA-TAGCGCC TTTGCTTTATATGTG TERM 288 239682 - 239630 - H 88 -9.3 -4.23615 | gap 1, opp_overlap 239631, overlap 239621 239616 239631 AGTACAGTGAACAAA GGCGTTCACCAAACAGCAAAAGTA TGTACG TGCTTTTGCCGTT-GGTGAGCGCT TTTTTACATTATAGA TERM 289 239681 - 239631 - H 100 -12.8 -3.13446 | gap 1, opp_overlap 239631, overlap 239621 239616 239630 GTACAGTGAACAAAG GCGTTCACCAAACAGCAAAAGTA TGTACG TGCTTTTGCCGTT-GGTGAGCGC TTTTTTACATTATAG TERM 290 239631 - 239681 + H 100 -15.7 -5.1925 | gap 1, opp_overlap 239621 239616 239631 239630 GTACAGTGAACAAAG GCGTTCACCAAACAGCAAAAGTAT GTAC GTGCTTTTGCCGTT-GGTGAGCGC TTTTTTACATTATAG TERM 291 239725 - 239708 - H 75 -2.8 -5.62045 | ATAGATAATAAAAAA TGTATT TTGCAG AATACA TGAGATTTATTTATT Cthe_0197 239756 - 240847 + | glutamate synthase (NADPH) GltB1 subunit Cthe_0198 240847 - 242352 + | glutamate synthase (NADPH) GltB2 subunit Cthe_0199 242339 - 242794 + | 4Fe-4S ferredoxin, iron-sulfur binding Cthe_0200 242799 - 244034 + | FAD-dependent pyridine nucleotide-disulphide oxidoreductase TERM 292 244129 - 244117 - g 77 -6.3 -4.53303 | TATTGTCATAGAAAA TTGTC TGG GACAA AGATATATTGGAGAC Cthe_0201 244031 - 244753 + | glutamate synthase (NADPH) GltB3 subunit TERM 293 245175 - 245187 + G 76 -3.4 -5.18866 | overlap 245184 TGCGTGCAGAATAGG TTCG GAGTG CGAA TTTTATTTGTTTGAA Cthe_0202 244786 - 246108 + | L-glutamine synthetase Cthe_0203 246136 - 246708 + | response regulator receiver/ANTAR domain-containing protein TERM 294 246824 - 246842 + F 93 -10.2 -4.44819 | opp_overlap 246823 AACCCCCTAATAGAT CCCTGGCG TAA TGCCGGGG TTTTAATATGTTCTG Cthe_0204 246987 - 247274 + | hypothetical protein Cthe_0205 247565 - 249523 + | hypothetical protein TERM 295 250847 - 250837 - g 74 -4 -5.07523 | GAGAGAGAAACAAAA CTTT GAA AAAG CTCGGAAGAATTATT Cthe_0206 249546 - 251777 + | UvrD/REP helicase TERM 296 252346 - 252362 + G 77 -7.9 -4.1899 | overlap 252347 GATGTTTTACTGGCA GCCGGAC CCT GTCCGGG TTTTGGCTGAGATAA TERM 297 252347 - 252361 + G 82 -11.4 -3.11073 | overlap 252346 ATGTTTTACTGGCAG CCGGAC CCT GTCCGG GTTTTGGCTGAGATA Cthe_0207 251774 - 252607 + | hypothetical protein TERM 298 253492 - 253505 + G 95 -4.5 -5.71712 | overlap 253485 GATGGACACGGCACG GCTTC CCGT GGAGC TTTTTTTATGTCAGG TERM 299 254836 - 254812 - g 100 -6.4 -5.76949 | TATGGCGAAAAAAAA CCTTTCCGAC GCTTT GGCGGAAAAG AATGCCTATCAGCAG Cthe_0208 252608 - 254899 + | single-stranded-DNA-specific exonuclease RecJ Cthe_0209 254996 - 255304 + | glycosyltransferase TERM 300 255471 - 255483 + T 88 -6.3 -5.47821 | opp_overlap 255466 255470 ACAAAGAAAACTGAT TTGTC TCA GACAA TTTTTTTACATGAAT Cthe_0210 256537 - 255476 - | LacI family transcription regulator TERM 301 256010 - 256031 + g 78 -3.7 -5.2853 | ATAATTATTGATATT TACAGACAT GACT GTGCCTGTA TTTTCTTTTTCCATA TERM 302 256183 - 256161 - G 81 -7 -4.82901 | overlap 256163 256180 CTTTTCTCATAAAAA GCGCTTTGAA TCT TCCAAAGCTC ATCCGAACTGTATAT TERM 303 256676 - 256686 + H 77 -4 -5.37043 | opp_overlap 256676 CAGGTCAAGAATTTA GAAT GAT ATTC TTTTTTATCTAGGCT TERM 304 256988 - 256978 - g 73 -8.2 -3.85698 | GCTCCTTTTTACAAA GCGG AAG CCGC AACTGTGGTAAATAC Cthe_0211 256900 - 257904 + | glycoside hydrolase family protein TERM 305 257955 - 257984 + T 100 -13.9 -5.07941 | opp_overlap 257955 ACCCCATTATAAAAA CTCTGTAATTTAT GAAA ATAAATTACAGAG TTTTTATATAATTTT TERM 306 257984 - 257955 - T 100 -13.9 -4.91511 | opp_overlap 257955 ACCCCATTATAAAAA CTCTGTAATTTAT GAAA ATAAATTACAGAG TTTTTATATAATTTT TERM 307 258434 - 258389 - T 100 -19.4 -4.26188 | opp_overlap 258389 258391 258428, overlap 258391 GTTATAGAGTGAAAA TATAATGCTAATGGGCATTC GGACGT GAATGCCCATTAGCATTATG TTTTATGATGTGTAT TERM 308 258389 - 258434 + T 100 -22.3 -4.53765 | opp_overlap 258389 258391, overlap 258391 258428 GTTATAGAGTGAAAA TATAATGCTAATGGGCATTCG GACG TGAATGCCCATTAGCATTATG TTTTATGATGTGTAT TERM 309 258391 - 258432 + T 100 -22.7 -3.86973 | opp_overlap 258389 258391, overlap 258389 258428 TATAGAGTGAAAATA TAATGCTAATGGGCATTCG GACG TGAATGCCCATTAGCATTA TGTTTTATGATGTGT TERM 310 258432 - 258391 - T 100 -22 -3.72985 | opp_overlap 258391 258389 258428, overlap 258389 TATAGAGTGAAAATA TAATGCTAATGGGCATTC GGACGT GAATGCCCATTAGCATTA TGTTTTATGATGTGT Cthe_0212 259884 - 258469 - | Beta-glucosidase Cthe_0213 260094 - 260867 + | hypothetical protein TERM 311 261169 - 261197 + F 73 -7.5 -3.68351 | opp_overlap 261169 TTATCTGCAAAAGAG TGCTTGCATGTCT TGA GGATATGCAAGAA TTTGGGTGGTACCGC TERM 312 261221 - 261248 + F 100 -9.2 -5.60993 | opp_overlap 261221, overlap 261212 GTACCGCGAAGCAAA CCTTCGTCCC TTTGTATT GGGATGAAGG TTTTTTTATGAAACA Cthe_0214 261339 - 262358 + | phenylalanyl-tRNA synthetase, alpha subunit TERM 313 263063 - 263049 - g 70 -9.2 -3.26031 | opp_overlap 263047 263049 263054, overlap 263047 263045 263050 TTGAGGTGAAAGATA CCGGGC TTT GCCCGA GATTTGCGGCAAGGG TERM 314 263062 - 263050 - g 72 -10.5 -2.55297 | opp_overlap 263049 263047 263054, overlap 263049 263047 263045 TGAGGTGAAAGATAC CGGGC TTT GCCCG AGATTTGCGGCAAGG pheT 262400 - 264787 + | phenylalanyl-tRNA synthetase subunit beta TERM 315 264804 - 264838 + T 71 -8.6 -2.82681 | opp_overlap 264802 AATGAATAATAAATA GCCGGAGAAGGGGG GAGGAGA TTCTTTTCTCCGGC TATAGTAAGCTTTTG Cthe_0216 265145 - 264858 - | small acid-soluble spore protein, alpha/beta type TERM 316 265460 - 265447 - g 74 -3.9 -5.011 | ATGGAAAGAATAAAA TTTGA CTAT TCAAA AGCATTGCCTTTTGT Cthe_0217 265432 - 266778 + | glucose-6-phosphate isomerase TERM 317 266901 - 266862 - T 100 -12.4 -4.2528 | opp_overlap 266867, overlap 266867 GGTCAATGGAATAAA TAAAATAAGGAGTCGGAA AGCT TTCTGACTCCTTATTTTT ATAGCAAAAATTAAT TERM 318 266896 - 266867 - T 100 -12.3 -5.10665 | opp_overlap 266867, overlap 266862 ATGGAATAAATAAAA TAAGGAGTCGGAA AGCT TTCTGACTCCTTA TTTTTATAGCAAAAA TERM 319 266867 - 266896 + T 100 -14.5 -4.82901 | opp_overlap 266867 266862 ATGGAATAAATAAAA TAAGGAGTCGGAA AGCT TTCTGACTCCTTA TTTTTATAGCAAAAA Cthe_0218 267724 - 266918 - | metallophosphoesterase TERM 320 268318 - 268350 + r 100 -10.8 -5.15969 | opp_overlap 268318 CGTCCGCACCATAAA GGTTTGGAAGGATT GCAAG AATTCTTTCAAACC TTTTTTCAATTGGCA TERM 321 268425 - 268386 - R 90 -12.4 -3.00946 | gap 1, opp_overlap 268386, overlap 268383 268388 268390 GCTGTTTAGAAATTA TACATGCGTAATACCTGTA TAA TTC-GGTACTACGCATGTA TTTCATTAAATGGGG TERM 322 268386 - 268425 + r 87 -10.2 -3.93288 | gap 1, opp_overlap 268386 268383 268388 268390 GCTGTTTAGAAATTA TACATGCGTAATACCTGTA TAA TTC-GGTACTACGCATGTA TTTCATTAAATGGGG TERM 323 268423 - 268388 - R 83 -10.6 -3.05997 | gap 1, opp_overlap 268386, overlap 268386 268383 268390 TGTTTAGAAATTATA CATGCGTAATACCTGTA TAA TTC-GGTACTACGCATG TATTTCATTAAATGG Cthe_0219 269055 - 268582 - | 5-nitroimidazole antibiotic resistance protein Cthe_0220 270969 - 270022 - | transposase, IS4 Cthe_0221 271287 - 271631 + | hypothetical protein Cthe_0222 271655 - 271903 + | hypothetical protein Cthe_0223 271894 - 272331 + | hypothetical protein Cthe_0226 274308 - 274715 + | hypothetical protein Cthe_0227 275023 - 275367 + | hypothetical protein Cthe_0228 275453 - 275932 + | hypothetical protein TERM 324 276223 - 276207 - g 76 -2.3 -5.49568 | AAGTGAAAATAAAAA CTTTG TATTCCG CAAAG TTGACATAAAAAACA Cthe_0229 276040 - 277059 + | NAD-dependent epimerase/dehydratase TERM 325 278826 - 278845 + G 72 -10 -2.6356 | overlap 278818 278816 278825 TGATGCGTGCCATTC GGCATGTC ATTC GGCATGCC ATTCTGCGTGTCACT Cthe_0230 277207 - 278913 + | hypothetical protein TERM 326 279538 - 279525 - g 76 -3.1 -5.22794 | opp_overlap 279534, overlap 279534 ATAACTACCAAAAAA GCAAA AGAG CTTGC CAGGGCAGGTCTTGC TERM 327 279875 - 279863 - g 76 -3.3 -5.24989 | GGATATACGAAAAAA GGCTT TAG AGGCC GGTGTTAAATTTATG Cthe_0231 278910 - 280247 + | radical SAM family protein Cthe_0232 280244 - 281239 + | hypothetical protein Cthe_0233 281255 - 281845 + | GCN5-related N-acetyltransferase TERM 328 282177 - 282213 + F 86 -6 -5.37865 | gap 1, overlap 282165 CCACGGAAGAAACTG GCTTTCGTCTC-TGACA TTTA TGTTATGAGGTGAAGGC TTTTTTAATTCTTAA TERM 329 283319 - 283347 + G 73 -6.8 -4.27467 | gap 1 CGGGAGACCATGTTG CCATCTGGGCTAC CAAC GTACCCCA-ATGG TTTATTACATTCTGG Cthe_0234 282265 - 284796 + | AMP-dependent synthetase and ligase Cthe_0235 285049 - 285279 + | YruB family glutaredoxin-like protein TERM 330 285327 - 285366 + F 81 -10.1 -3.15574 | opp_overlap 285332, overlap 285332 TGTAAAAACACACGA AAAAAGGCTGACTGTCT GGTGAA AGACAGCCGGCCTTTTG TGTTAATGCCGTTCC TERM 331 285361 - 285332 - f 100 -10 -5.28755 | opp_overlap 285332 285327 AAACACACGAAAAAA GGCTGACTGTCT GGTGAA AGACAGCCGGCC TTTTGTGTTAATGCC TERM 332 285332 - 285361 + F 93 -10 -4.70583 | opp_overlap 285332, overlap 285327 AAACACACGAAAAAA GGCTGACTGTCT GGTGAA AGACAGCCGGCC TTTTGTGTTAATGCC TERM 333 285438 - 285458 + F 74 -3.2 -5.38549 | opp_overlap 285431, overlap 285440 TCATAAATTTTGCTG CTTGCGCA AAGGG TGTGCACG TTTTTGTTATTTGAG Cthe_0236 285730 - 286860 + | aldo/keto reductase Cthe_0237 287217 - 286825 - | response regulator receiver protein Cthe_0238 287308 - 287574 + | hypothetical protein TERM 334 288069 - 288055 - g 74 -4.2 -5.10461 | opp_overlap 288055, overlap 288056 GCTATGGAAGAAAAA GTGACG GTG CGTCAG AGTTTGTTGTTTTCA TERM 335 288068 - 288056 - g 70 -7.7 -3.65554 | opp_overlap 288055, overlap 288055 CTATGGAAGAAAAAG TGACG GTG CGTCA GAGTTTGTTGTTTTC TERM 336 289662 - 289637 - g 75 -5.5 -4.75288 | opp_overlap 289639, overlap 289639 TTATATTAAAACAAA GATCGACATAG AAAA CTATATCGATT ATTATGTAGCTCAGA TERM 337 289660 - 289639 - g 75 -8.1 -3.98052 | opp_overlap 289639, overlap 289637 ATATTAAAACAAAGA TCGACATAG AAAA CTATATCGA TTATTATGTAGCTCA TERM 338 290438 - 290411 - g 77 -8.4 -3.89346 | CTGGGAGGGTATAAA CGGATCCGTTGA GGCA TCATCGGATACG ATAACAGTCAACCTT Cthe_0239 287571 - 290726 + | cellulosome enzyme, dockerin type I Cthe_0240 290782 - 291564 + | hypothetical protein Cthe_0241 291528 - 292202 + | hypothetical protein TERM 339 292203 - 292246 + T 70 -6.2 -4.27886 | gap 1, opp_overlap 292209 292212, overlap 292209 292212 AATGTCGAGGGATAG T-TGAAACAGGTCAGGAAGAG AGG TTCTTCCTGACTTGTTCTGTA TTTATATGTTTACAA TERM 340 292239 - 292209 - T 100 -12.7 -3.64103 | opp_overlap 292203 292209 292212, overlap 292212 GAGGGATAGTTGAAA CAGGTCAGGAAGA GAGGT TCTTCCTGACTTG TTCTGTATTTATATG TERM 341 292209 - 292239 + T 100 -15.6 -3.81885 | opp_overlap 292209 292212, overlap 292203 292212 GAGGGATAGTTGAAA CAGGTCAGGAAGAG AGG TTCTTCCTGACTTG TTCTGTATTTATATG TERM 342 292212 - 292236 + T 100 -13.7 -4.01227 | opp_overlap 292209 292212, overlap 292209 292203 GGATAGTTGAAACAG GTCAGGAAGAG AGG TTCTTCCTGAC TTGTTCTGTATTTAT TERM 343 292236 - 292212 - T 95 -13 -2.63585 | opp_overlap 292212 292209 292203, overlap 292209 GGATAGTTGAAACAG GTCAGGAAGA GAGGT TCTTCCTGAC TTGTTCTGTATTTAT Cthe_0242 293147 - 292248 - | hypothetical protein TERM 344 293019 - 293029 + g 71 -4 -4.90455 | AACTATTGCAAACTC TGTA TTG TACA TTTTTCTCCATATAT TERM 345 294636 - 294618 - g 83 -3.2 -5.60993 | opp_overlap 294618 CTTTTTATAAAAAAA TAGAAG GTGAGTA CTTCTA TTACTAAGTCAAAAA Cthe_0243 293795 - 294643 + | copper amine oxidase-like protein TERM 346 294776 - 294810 + T 77 -8 -3.91473 | opp_overlap 294781, overlap 294781 294806 CAGATAAAAACAGAT AAAAACAGGTACTTGT CAA AAAGGTACCTGTTTTC TTTATGAAAATTTAT TERM 347 294781 - 294805 + T 89 -7.9 -4.99043 | opp_overlap 294781, overlap 294776 AAAAACAGATAAAAA CAGGTACTTGT CAA AAAGGTACCTG TTTTCTTTATGAAAA TERM 348 294805 - 294781 - T 83 -5.7 -5.20633 | opp_overlap 294781 294776 AAAAACAGATAAAAA CAGGTACTTGT CAA AAAGGTACCTG TTTTCTTTATGAAAA Cthe_0244 296945 - 294822 - | heavy metal translocating P-type ATPase TERM 349 295117 - 295134 + g 70 -9.8 -2.71364 | ACACCTATATCCGAC CGCGCC AGCACA GGCGCG TCATTCAGCCCGTCA TERM 350 296643 - 296657 + g 83 -5 -5.252 | AAGTATTCCGACACC GAGTTT TAC AAGCTC TTTTTTGTCGAAGTC Cthe_0245 297324 - 296947 - | ArsR family transcriptional regulator Cthe_0246 297573 - 300035 + | carbohydrate-binding family 6 protein TERM 351 300086 - 300129 + F 85 -2.6 -6.22802 | gap 1, opp_overlap 300086 GGAAAATAAATAATG GAGCTGTTGCACATCAAAT GGGATGA ATTTCAC-TGCAACGGCTC TTTTTTTTTATGGGA TERM 352 300848 - 300835 - g 70 -3.1 -4.87133 | opp_overlap 300839, overlap 300839 AGCTTTCAAAGAAAA TTGAC TTTT GCCAA AGTTTGCAATGTGAA Cthe_0247 300315 - 302120 + | DNA mismatch repair protein MutS-like protein Cthe_0248 303219 - 302272 - | transposase, IS4 Cthe_0249 303361 - 305769 + | peptidase C11, clostripain TERM 353 306486 - 306447 - g 89 -9.4 -4.18638 | gap 1, opp_overlap 306460, overlap 306444 AATAAAAAAAATCAA GCCGCCGAATATAAGCAAG CAG CTTGCCTATGTCCAG-GGC AAAAGTTATGAGGAC TERM 354 306552 - 306532 - g 83 -9.8 -3.8709 | overlap 306546 AAATTGGTGCAGAAA TTTGCGGT ATTGA ACCGCAAA GCAATTGTGGATGAG TERM 355 306778 - 306756 - g 70 -9.9 -2.74488 | gap 1 CAAGGATTGGAACTA TTCCGCGCCC CATG GGGCG-GGAA GACTGATGAGCAGGG Cthe_0250 305803 - 306993 + | hypothetical protein Cthe_0251 307053 - 309608 + | transglutaminase-like protein TERM 356 309886 - 309902 + GF 79 -7.3 -4.3613 | opp_overlap 309892, overlap 309887 309890 CTCATGCTTTGTGTT TGGAAAC GGA GTTTCCG TGTTTTTCTTTTGGA TERM 357 309887 - 309901 + GF 74 -8.6 -3.20051 | opp_overlap 309892, overlap 309886 309890 TCATGCTTTGTGTTT GGAAAC GGA GTTTCC GTGTTTTTCTTTTGG TERM 358 309890 - 309904 + GF 82 -4.2 -5.49568 | opp_overlap 309892, overlap 309887 309886 TGCTTTGTGTTTGGA AACGGA GTT TCCGTG TTTTTCTTTTGGATT Cthe_0252 309626 - 310777 + | hypothetical protein TERM 359 310994 - 311008 + GF 71 -6.4 -4.21933 | GGGTACAAAAATCTG GAAGGG CAA CTCTTC TTCTTTTGAGCTTGA TERM 360 311219 - 311197 - gf 74 -7.1 -4.08164 | gap 1, overlap 311206 311210 AAAACCCGATAGAAA TGGAAG-GGA CATA TCCGCTTCCA GAAGCGCAGATGGAC Cthe_0253 310734 - 311723 + | ATPase TERM 361 312605 - 312593 - g 79 -9.1 -3.86346 | CGATGTCTTTATAAA TCCCG GGT CGGGA AGGCAGCAGCATTAC TERM 362 312680 - 312649 - g 89 -10.2 -4.25658 | AGCTTATGAAAATAA GGAATTTCACCGGA GTAT CCCGGGAAAATTCC GGGGAGCGTCAAAAA Cthe_0254 311724 - 313064 + | hypothetical protein Cthe_0255 313278 - 313691 + | hypothetical protein TERM 363 313747 - 313763 + F 74 -6.7 -4.1721 | TTTATGGTATAACCT TAAAAAC TCT GTTTTTA TTTTCCGATATACAT Cthe_0256 313876 - 316014 + | histidine kinase Cthe_0257 316137 - 317189 + | twitching motility protein TERM 364 318521 - 318506 - g 73 -5.4 -4.56597 | GGTGTGGGGTAAAAA CAGCTA TGGT CAGCTG GGAAACGGCACAACC Cthe_0258 317319 - 318728 + | cellulosome enzyme, dockerin type I Cthe_0259 318752 - 319336 + | rhomboid-like protein Cthe_0260 319559 - 321682 + | peptidase S1 and S6, chymotrypsin/Hap Cthe_0261 321846 - 322499 + | HAD family hydrolase Cthe_0262 322558 - 323853 + | glutamate-5-semialdehyde dehydrogenase TERM 365 323918 - 323952 + F 100 -13.1 -5.37043 | gap 1, opp_overlap 323918 CAGATTGGGTTAAAA CCCTGCAAA-GTCACT TTAT AGTGATGTTTGCAGGG TTTTTTATATGCAAT TERM 366 323952 - 323918 - f 93 -10.9 -4.09243 | gap 1, opp_overlap 323918 CAGATTGGGTTAAAA CCCTGCAAA-GTCACT TTAT AGTGATGTTTGCAGGG TTTTTTATATGCAAT TERM 367 324034 - 324044 + F 77 -4 -5.48623 | TCCTTTGAGTTTTTG CAAA TGT TTTG TTTTTATTTCTGTTT Cthe_0263 324119 - 324490 + | hypothetical protein Cthe_0264 324591 - 325016 + | hypothetical protein TERM 368 325037 - 325059 + F 80 -5.5 -5.30575 | opp_overlap 325037 TTGCTTGAAGGAAAA CCCGGGG ATGGTTTGC TCCCGGG TTTTTTAAGTTTTTA Cthe_0265 325267 - 326388 + | aminotransferase, class V TERM 369 327063 - 327076 + G 75 -2.5 -5.18715 | TATTTCAGATTTGGT TAAAA TTGA TTTTA TTTTGTTGTTTTTAT Cthe_0266 326614 - 328101 + | methyl-accepting chemotaxis sensory transducer TERM 370 328156 - 328204 + T 100 -11.4 -5.61881 | gap 2, opp_overlap 328160 328162 GTGAATGGCGTAAAA TAAATAGGAGCTGCTCTGGTTAAT CAA ATTAA-CGG-GCAGCTCCTGTTTG TTTTTATTTTTAAGG TERM 371 328200 - 328160 - T 71 -5.6 -4.65263 | gap 2, opp_overlap 328156, overlap 328162 ATGGCGTAAAATAAA TAGGAGCTGCTCTGGTTAAT CAA ATTAACG-G-GCAGCTCCTG TTTGTTTTTATTTTT TERM 372 328198 - 328162 - T 77 -8.2 -3.93868 | gap 2, opp_overlap 328156, overlap 328160 GGCGTAAAATAAATA GGAGCTGCTCTGGTTAAT CAA ATTAACG-G-GCAGCTCC TGTTTGTTTTTATTT Cthe_0267 330229 - 328214 - | type 3a, cellulose-binding TERM 373 330027 - 330016 - G 85 -5.8 -5.22006 | overlap 330017 GTATTACAAGAAAAA CTGC AGCG GCAG CGGCAAACGCAGAAA Cthe_0268 331028 - 330231 - | putative RNA polymerase sigma factor SigI TERM 374 330955 - 330965 + g 70 -5.4 -4.46976 | opp_overlap 330952, overlap 330952 ATATTCACGATACCG TCCT CGA AGGA TTTATCTTTATTAGT TERM 375 331045 - 331057 + H 80 -7.7 -4.22652 | overlap 331055 TAATTCACCCCTTGA CCACA GCA TGTGG TTTTGAATCATCTGG Cthe_0269 331571 - 333004 + | glycoside hydrolase family protein TERM 376 333035 - 333073 + F 77 -4 -5.45802 | gap 1, opp_overlap 333035, overlap 333029 ACAGATTTACGGAAA GAGTTACTG-CAAACTA CCTGAA TAGGTGGGCAGTAACTC TTTTTGTTTTCAAGC TERM 377 334141 - 334160 + G 73 -7.2 -4.10161 | TATATAAATAGTTTG CTTAAGTC ACCG GACTTAGG TTTTACAAGATACTG Cthe_0270 333151 - 334605 + | glycoside hydrolase family protein Cthe_0271 334821 - 335747 + | type 3a, cellulose-binding TERM 378 335839 - 335819 - T 95 -12.6 -3.63627 | opp_overlap 335819 GCTTTATATTTCAAA TGTGGGGG ATTTG CCCCCACA TTTGAAACAGAAAAA TERM 379 335819 - 335839 + T 91 -12.6 -3.53012 | opp_overlap 335819 GCTTTATATTTCAAA TGTGGGGG ATTTG CCCCCACA TTTGAAACAGAAAAA Cthe_0272 337031 - 335877 - | penicillin-binding protein 6 Cthe_0273 338777 - 337173 - | metal dependent phosphohydrolase TERM 380 337738 - 337722 - G 83 -10.9 -3.76815 | opp_overlap 337720 337723 ATTTAAAAGTTCAAA TCCTTCC TTT GGAAGGA GAGGTTTTTTGTTAT TERM 381 337723 - 337742 + g 100 -5.8 -5.74288 | gap 1, opp_overlap 337722, overlap 337720 TTTAAAAGTTCAAAT CCT-TCCTT TGG AAGGAGAGG TTTTTTGTTATTTGT TERM 382 338628 - 338601 - G 75 -5.6 -4.72272 | GTGCCTGATGAAAAA CTTTGCCGTAAT CATC ATTGCCGCAAAG GCACTCATATACAGG TERM 383 338964 - 338988 + r 100 -7.2 -5.35222 | opp_overlap 338964 AGTTAAACCGAAAAA CAGCCTCT TTTGTGTTT AGAGGCTG TTTTTTGTGGCTTTT TERM 384 338988 - 338964 - R 86 -7.2 -4.81851 | opp_overlap 338964 AGTTAAACCGAAAAA CAGCCTCT TTTGTGTTT AGAGGCTG TTTTTTGTGGCTTTT Cthe_0274 340710 - 339019 - | glycoside hydrolase family protein Cthe_0275 341280 - 343715 + | cellobiose phosphorylase TERM 385 343765 - 343737 - f 100 -11.9 -4.92783 | opp_overlap 343737 AAGGTATGACAAAAA GAAGTTATCCG GGTTTTT CGGATAACTTC TTTTTTAAAATAGCG TERM 386 343737 - 343765 + F 100 -13.3 -5.0538 | opp_overlap 343737 AAGGTATGACAAAAA GAAGTTATCCGGG TTT TTCGGATAACTTC TTTTTTAAAATAGCG Cthe_0276 343980 - 344939 + | 2-hydroxyacid dehydrogenase TERM 387 345025 - 344998 - f 100 -14.3 -4.45738 | opp_overlap 344998 345001 GATTTTAACAAGAAA GAAGCAGCTTC GGGGGT GAAGCTGCTTC TTTAGACTTTGCTGT TERM 388 344998 - 345025 + F 100 -15 -3.73509 | opp_overlap 344998, overlap 345001 GATTTTAACAAGAAA GAAGCAGCTTCG GGGG TGAAGCTGCTTC TTTAGACTTTGCTGT TERM 389 345001 - 345022 + F 93 -10.9 -3.98804 | opp_overlap 344998, overlap 344998 TTTAACAAGAAAGAA GCAGCTTCG GGGG TGAAGCTGC TTCTTTAGACTTTGC TERM 390 345185 - 345221 + F 91 -11.9 -3.53012 | overlap 345194 TTCTGATACTCTGTG GATTATAAATTTGGGGT TTT ATGCCAAATTTATAATC TTTGCAGAACAAAGC TERM 391 345360 - 345382 + F 79 -3.5 -5.63517 | GCTTTTGATTCAGTC CATGTTTTT TAATC AAATACATG TTTTTTATTTAAAAA TERM 392 346167 - 346184 + G 70 -2.7 -5.1471 | overlap 346168 346178 TGAACAATGCATTGA CGTTTTG TCTC CAAAACC TTTGTTTTTTCTCAT TERM 393 346178 - 346188 + G 78 -4 -5.31877 | overlap 346168 346167 TTGACGTTTTGTCTC CAAA ACC TTTG TTTTTTCTCATAAAT Cthe_0277 345499 - 346374 + | hypothetical protein TERM 394 346554 - 346526 - g 79 -9 -3.90424 | gap 1, opp_overlap 346529 346550, overlap 346521 346529 AAAGAAAAGATACAA CAAGCCCGGAAAT GTCT ATCT-CGGGCTTG TTCACAGGCTTGATC Cthe_0278 346371 - 347066 + | ribosomal large subunit pseudouridine synthase D Cthe_0279 347181 - 347372 + | hypothetical protein TERM 395 347453 - 347478 + G 70 -8.1 -3.71284 | opp_overlap 347447 GCCTACAACCTCATG GCCGGAGCGGC GGCT GCTGCCACGGC TTATCTTACTGCAAC Cthe_0280 347375 - 347683 + | coat F domain-containing protein TERM 396 347715 - 347694 - f 80 -6.1 -4.77778 | opp_overlap 347693, overlap 347685 AATAAATATATAAAA TTTATATAA AAAT TTATATAAA AATTTGTATAAACCC TERM 397 347756 - 347790 + G 89 -6.6 -5.26158 | opp_overlap 347756 AAGTCCGATATATTA GGCAATATAAGC AAAGTGTTCCG GCTTGTATTGCC TTTGTTTTTTCTTTG Cthe_0281 347719 - 347970 + | hypothetical protein Cthe_0282 347990 - 349432 + | glycogen/starch synthases, ADP-glucose type TERM 398 349504 - 349546 + T 81 -10 -3.06009 | opp_overlap 349510, overlap 349507 349508 349536 AAATCGGACAAACAA TAAAAACAGGGCTATTGAAG TTT TTTCAATAGCCCTGAAATTA TGTTCAAGGATTTTA TERM 399 349507 - 349543 + T 70 -7.3 -3.66556 | opp_overlap 349510, overlap 349504 349508 349536 TCGGACAAACAATAA AAACAGGGCTATTGAAG TTT TTTCAATAGCCCTGAAA TTATGTTCAAGGATT TERM 400 349508 - 349542 + T 83 -10.8 -2.79452 | opp_overlap 349510, overlap 349507 349504 349536 CGGACAAACAATAAA AACAGGGCTATTGAAG TTT TTTCAATAGCCCTGAA ATTATGTTCAAGGAT TERM 401 349540 - 349510 - T 100 -17.1 -5.42164 | opp_overlap 349508 349507 349504 349536 GACAAACAATAAAAA CAGGGCTATTGAA GTTTT TTCAATAGCCCTG AAATTATGTTCAAGG TERM 402 349660 - 349676 + T 71 -5.2 -4.7268 | overlap 349672 349673 ATGTATTATTGACTA TTGAAG AATGG CTTCAA TTTTATTGAGTATTT Cthe_0283 350604 - 349657 - | aldo/keto reductase TERM 403 350009 - 350033 + g 76 -4.3 -5.02777 | overlap 350010 ACAATCTGGGAAATT CCGTTCTTTTC TCC GAAAGGAATGA TTTCTTTTTCTATAT TERM 404 350957 - 350945 - g 73 -6.9 -4.2748 | GATTTACAAAAAAGA GCCCG GGA CGGAC GAATTTATAAAAAAA TERM 405 351452 - 351438 - g 71 -4.2 -4.8543 | opp_overlap 351439 GAACCGTCAGAAAAA CCTTCT CTC AGAGGG GTTGAATTCCCCGAT Cthe_0284 350817 - 352175 + | hypothetical protein Cthe_0285 352376 - 353584 + | isocitrate dehydrogenase TERM 406 353610 - 353646 + F 79 -6.6 -4.63932 | ATATCATGGATTTGT TAACCTGGTACGGTAT AATCA AAGCCATACCGGGTTA TTTTATTGCAACATA Cthe_0286 353826 - 355100 + | response regulator receiver sensor signal transduction histidine kinase TERM 407 357126 - 357108 - g 80 -8.2 -4.46155 | opp_overlap 357108, overlap 357099 GAGACAGGGATAAAA TTTCCCAG ATA CTGAGAAA TTTCCTTTCCAATGC Cthe_0287 355145 - 358627 + | GAF sensor hybrid histidine kinase Cthe_0288 358784 - 359893 + | MCP methyltransferase, CheR-type Cthe_0289 359967 - 362324 + | DEAD_2 TERM 408 363629 - 363613 - g 78 -3.7 -5.26875 | CTTTCAATGAAAAAA GCCATAT CTG ATATTGC AGAAGTTGAGGATGT Cthe_0290 362395 - 363681 + | homoserine dehydrogenase TERM 409 363747 - 363725 - T 95 -10.6 -4.27886 | opp_overlap 363728 CTGTAAATAGAGAAA GTATCCCTTG GGG CGAGGGATAC TTCAAGAAGTGGTAA TERM 410 363789 - 363769 - T 88 -11.3 -3.37017 | opp_overlap 363769 AAGTGGTAAGATGAA CTGTAGATT TTG AATCTACAG TTGATAGCATATGCA TERM 411 363769 - 363789 + T 87 -11.3 -3.17763 | opp_overlap 363769 AAGTGGTAAGATGAA CTGTAGATT TTG AATCTACAG TTGATAGCATATGCA TERM 412 363821 - 363849 + T 100 -14.9 -4.27062 | opp_overlap 363828, overlap 363816 ATTTAGATGATTTCG TAAGGTATAACTT ATT AAGTTATACCTTA TTTACTTTTCATTAA TERM 413 363898 - 363925 + T 71 -2.9 -5.24449 | overlap 363899 TTTAATTTTATTGTC GTAAAAAAATT TTTTTT AATATTTTTAC TTTTTTAAATTTGTA Cthe_0291 366015 - 363973 - | hypothetical protein TERM 414 365766 - 365782 + g 78 -3.7 -5.29846 | opp_overlap 365778, overlap 365778 GTTCTTCTCTGTCCA CTTTGAT GGA AACAAAG TTTTTGTTTAGAATT TERM 415 367138 - 367163 + G 74 -6.1 -4.37092 | overlap 367139 AAGATTTTAACGGGA AGTGCATGGCA AAGA TGCCGTGTACA TTTTATGAGAAACGT TERM 416 367139 - 367162 + G 73 -9.6 -3.21934 | overlap 367138 AGATTTTAACGGGAA GTGCATGGCA AAGA TGCCGTGTAC ATTTTATGAGAAACG Cthe_0292 366400 - 367620 + | transposase, mutator type Cthe_0293 367692 - 368135 + | hypothetical protein TERM 417 368944 - 368987 + T 77 -8.1 -3.82067 | gap 1, opp_overlap 368939 368946, overlap 368938 368946 TGCCGTTAAATTGAT AACACCCACC-GCAATAGGC ATTGA GCCGGCTGCAGGTGGGTGTA TTTCAGATTTTTATG TERM 418 368946 - 368985 + T 85 -10.7 -3.47713 | gap 1, opp_overlap 368939 368946, overlap 368944 368938 CCGTTAAATTGATAA CACCCACC-GCAATAGGC ATTGA GCCGGCTGCAGGTGGGTG TATTTCAGATTTTTA TERM 419 368985 - 368946 - T 85 -10.7 -3.47349 | gap 1, opp_overlap 368946 368944 368938, overlap 368939 CCGTTAAATTGATAA CACCCACC-GCAATAGGC ATTGA GCCGGCTGCAGGTGGGTG TATTTCAGATTTTTA Cthe_0295 370116 - 368998 - | phosphoserine aminotransferase TERM 420 370194 - 370225 + H 74 -8.7 -3.2241 | opp_overlap 370194, overlap 370193 ATATAAACAAAAAAA CTCTCAACCCTGA AAATGA TCAGGGACGAGAG ATTTTATCCGCGGTG TERM 421 370225 - 370194 - H 100 -10.9 -6.04953 | opp_overlap 370193 370194 ATATAAACAAAAAAA CTCTCAACCCTGA AAATGA TCAGGGACGAGAG ATTTTATCCGCGGTG Cthe_0296 370827 - 372302 + | hypothetical protein Cthe_0297 372382 - 372765 + | hypothetical protein TERM 422 374137 - 374125 - g 74 -6.3 -4.4078 | AGAAGAAGTAAGAAA TCTTG CTG CAAGA AGCGCAAATGCGGCA Cthe_0298 372821 - 374623 + | methyl-accepting chemotaxis sensory transducer TERM 423 375863 - 375853 - g 70 -5.4 -4.31433 | TATTGTTATAATAAA CTCT CTG AGAG CGGCGGGTGATGCCA Cthe_0299 374726 - 376096 + | MATE efflux family protein TERM 424 376129 - 376170 + T 95 -12.6 -3.62411 | opp_overlap 376134, overlap 376134 TTGAAAAGAATTGCA AAAAAGCTGTGAAAGGAA TCAGGT TTCTTTTCACAGCTTTTG TATTTGGTGTTTTCC TERM 425 376134 - 376165 + T 100 -12.5 -4.83032 | opp_overlap 376134, overlap 376129 AAGAATTGCAAAAAA GCTGTGAAAGGAA TCAGGT TTCTTTTCACAGC TTTTGTATTTGGTGT TERM 426 376165 - 376134 - T 100 -10.3 -5.11937 | opp_overlap 376134 376129 AAGAATTGCAAAAAA GCTGTGAAAGGAA TCAGGT TTCTTTTCACAGC TTTTGTATTTGGTGT Cthe_0300 376813 - 376196 - | Allergen V5/Tpx-1 related TERM 427 377477 - 377460 - g 85 -2.6 -5.86976 | opp_overlap 377461, overlap 377461 CCATAAAAGAAAAAA TCACCC AGGCCG GGGTGT TTGAGTTTTTTGAGT Cthe_0301 376994 - 377749 + | hypothetical protein Cthe_0302 377769 - 378209 + | hypothetical protein TERM 428 378310 - 378300 - T 74 -3.2 -5.39755 | TACAAGGATAAAAAA CAGT ATT ACCG CTGCTTCATTAAACG Cthe_0303 378982 - 378536 - | hypothetical protein TERM 429 379966 - 379956 - g 74 -4.6 -4.90013 | opp_overlap 379956 TAACTGAACGAAAAA CCCG CTA CGAG TTATTGTTTCTTTTG Cthe_0304 379307 - 380377 + | integrase catalytic subunit TERM 430 380853 - 380871 + G 74 -3.8 -5.06451 | overlap 380854 TGGTTCTGACGGTAT TGAAGGCT GCC AGCATTCG TTTTTTGAAATACTC TERM 431 381110 - 381094 - g 80 -10.9 -3.3972 | GGAGAAAACTATGAA TTCAGCC TTG GGCTGAA CGGTCTGGGAAGCTG Cthe_0305 380737 - 382722 + | DNA topoisomerase (ATP-hydrolyzing) TERM 432 384183 - 384170 - g 86 -2.4 -5.92399 | GAAGAAAATAAAAAA GCTT ATCATA AAGC AACTGGAGGAGATTG Cthe_0306 382797 - 384980 + | DNA gyrase/topoisomerase IV, subunit A Cthe_0307 385137 - 385514 + | hypothetical protein Cthe_0308 385518 - 385856 + | hypothetical protein TERM 433 385889 - 385878 - f 77 -3 -5.55769 | overlap 385886 TTTGAGAACAAAAAA CAAA GAAA TTTG AGAGCAAAGGAACCA TERM 434 385898 - 385924 + F 100 -13.2 -4.77757 | opp_overlap 385898, overlap 385902 AAATTTGAGAGCAAA GGAACCACAAAA TAT TTTTGTGGTTTC TTTTACTTTTTCCAA TERM 435 385924 - 385898 - f 90 -11 -3.85114 | opp_overlap 385898 385902 AAATTTGAGAGCAAA GGAACCACAAAA TAT TTTTGTGGTTTC TTTTACTTTTTCCAA TERM 436 385902 - 385920 + F 100 -10.4 -4.88646 | opp_overlap 385898, overlap 385898 TTGAGAGCAAAGGAA CCACAAAA TAT TTTTGTGG TTTCTTTTACTTTTT Cthe_0309 386019 - 388001 + | excinuclease ABC subunit B Cthe_0310 389073 - 388027 - | hypothetical protein Cthe_0311 389538 - 392366 + | excinuclease ABC subunit A TERM 437 393153 - 393142 - g 75 -3 -5.29445 | GCCGAAGAAGAAAAA GTAT CTTG ATAC TTACGGCACAAATCT Cthe_0312 392714 - 395125 + | ATPase AAA-2 TERM 438 395153 - 395183 + F 100 -8.5 -5.61689 | gap 1, opp_overlap 395153 AGTGGCACAAAAAAA GCATTTACTTTAGG GACA CCTGA-GTAAATGC TTTTTTATTGCTTTT TERM 439 395183 - 395153 - f 93 -6.3 -5.61596 | gap 1, opp_overlap 395153 AGTGGCACAAAAAAA GCATTTACTTTAGG GACA CCTGA-GTAAATGC TTTTTTATTGCTTTT Cthe_0313 395407 - 396438 + | hypothetical protein Cthe_0314 396564 - 397742 + | glycosyltransferase 28-like protein Cthe_0315 397923 - 398672 + | putative RNA polymerase sigma factor SigI TERM 440 398914 - 398902 - g 71 -6.2 -4.26202 | opp_overlap 398901 398898 ATATGGATTAACAAA CCGG GCAGA CCGG ATGGTATATATGCAT Cthe_0316 398665 - 400599 + | PA14 TERM 441 400612 - 400656 + T 100 -15.9 -5.02357 | opp_overlap 400621, overlap 400621 TAATATTGATTTGAC GTTAATAAAGGACGGATACTG TTA CGGTAACCGTCCTTTTTTGAC TTTTATTTAATTATG TERM 442 400621 - 400647 + T 100 -13 -5.28315 | opp_overlap 400621, overlap 400612 TTTGACGTTAATAAA GGACGGATACTG TTA CGGTAACCGTCC TTTTTTGACTTTTAT TERM 443 400647 - 400621 - T 100 -10.8 -4.1822 | opp_overlap 400621 400612 TTTGACGTTAATAAA GGACGGATACTG TTA CGGTAACCGTCC TTTTTTGACTTTTAT Cthe_0317 401376 - 400705 - | hypothetical protein TERM 444 400883 - 400869 - G 79 -5.7 -4.86731 | GCGTTCCAAACAAAA TTCCG CCTAC CGGAA AAACACAACCAATCA Cthe_0318 402210 - 401518 - | ErfK/YbiS/YcfS/YnhG TERM 445 401853 - 401869 + g 77 -6.5 -4.56358 | TATTATACATTCGGA TGCAGCC GTG GGATGCA TTTTGTCTGCCTATG Cthe_0319 402462 - 403106 + | class II aldolase/adducin-like protein TERM 446 404116 - 404101 - g 71 -4 -4.87037 | opp_overlap 404103, overlap 404094 404103 AAGATACATCAAAAA CAGTTG TTGA CAACTA TAATTCCGTTGAGAG Cthe_0320 403152 - 404618 + | hypothetical protein TERM 447 404914 - 404929 + G 74 -9 -3.52515 | ATTTTAAGAAGTCCC TTGCCG TTGA CGGCAA TTATACCTTTTCAAT TERM 448 405300 - 405332 + G 74 -9.2 -3.53224 | GGACTTGAGGACAGT TTCAGATGGGCGCT GATAA GGCGTCTGTCTGAA TTTGGGGAAAAGCTC Cthe_0321 404751 - 405716 + | TPR repeat-containing protein Cthe_0322 407047 - 405713 - | glycoside hydrolase family protein TERM 449 407549 - 407577 + H 100 -12.6 -5.21709 | opp_overlap 407549 GTAACGCGGAAGACA GTCTTTCGTCCA ATTGC TGGATGAAAGAC TTTTTTGATATAGGG TERM 450 407577 - 407549 - H 84 -11.1 -3.08867 | opp_overlap 407549 GTAACGCGGAAGACA GTCTTTCGTCCAA TTG CTGGATGAAAGAC TTTTTTGATATAGGG Cthe_0323 407624 - 407866 + | hypothetical protein TERM 451 408974 - 408994 + G 71 -6.1 -4.1822 | GCCACAGTAATTGAG CCGCTGATT TCA AAACAGTGG TTTGTTAAAATGAAG TERM 452 409627 - 409616 - g 75 -5.8 -4.72272 | TTCTCCGAGGAAAAA GCTG AATC CAGC AGGAACTTTGCAAAC valS 407909 - 410563 + | valyl-tRNA synthetase TERM 453 410852 - 410886 + G 77 -6.5 -4.65895 | gap 1, opp_overlap 410883, overlap 410853 CTCCTCCTGTATATC CCTGATTGGC-ATGCC GCTG GGCATTGACAATCAGC TTTTTAACTGCGCCG TERM 454 410853 - 410885 + G 77 -10 -3.39216 | gap 1, opp_overlap 410883, overlap 410852 TCCTCCTGTATATCC CTGATTGGC-ATGCC GCTG GGCATTGACAATCAG CTTTTTAACTGCGCC TERM 455 410938 - 410916 - g 72 -3.4 -5.0916 | GTTGCAATACAAAAA GGAAGAATAC TTG GTGTTGTTCC AAAGACATATGTTCC TERM 456 412337 - 412326 - g 70 -5.8 -4.41616 | ATTCTTGCAAAGAAA GCCT TCGA AGGC AAATACACGGACGAT nadE 410598 - 412535 + | NAD synthetase TERM 457 412565 - 412533 - T 90 -12.2 -3.2115 | opp_overlap 412531 412537 412541, overlap 412538 GAAAGCATGCAGGAA TAAAACAAGAGGGC TTCAC GCCCTCTTACTTTA TATTATTTACTGTAT TERM 458 412560 - 412538 - T 93 -9.9 -4.72497 | opp_overlap 412537 412531 412541, overlap 412533 CATGCAGGAATAAAA CAAGAGGGC TTCAC GCCCTCTTA CTTTATATTATTTAC TERM 459 412541 - 412557 + T 82 -9.4 -3.71851 | opp_overlap 412538 412533, overlap 412537 412531 GCAGGAATAAAACAA GAGGGC TTCAC GCCCTC TTACTTTATATTATT Cthe_0326 412808 - 412605 - | hypothetical protein TERM 460 413463 - 413503 + H 100 -16.5 -3.34398 | opp_overlap 413469, overlap 413469 ATGGCTCACCAATAA TGGAAAGACCTTGTATACA TGT TGTATGCAAGGTCTTTTTA TATTTCAAAACAAGA TERM 461 413469 - 413497 + H 100 -15.5 -5.19879 | opp_overlap 413469, overlap 413463 CACCAATAATGGAAA GACCTTGTATACA TGT TGTATGCAAGGTC TTTTTATATTTCAAA TERM 462 413497 - 413469 - H 100 -13.3 -3.8646 | opp_overlap 413469 413463 CACCAATAATGGAAA GACCTTGTATACA TGT TGTATGCAAGGTC TTTTTATATTTCAAA TERM 463 413745 - 413757 + G 71 -4.8 -4.52589 | TTTTAACTATGATTT GCCA AAATG TGGC TTTTGTATCGGCAGA Cthe_0327 413675 - 416248 + | S-layer-like domain-containing protein TERM 464 416353 - 416381 + T 100 -16.1 -4.72272 | opp_overlap 416353 AAACTTATGAAAAAA TGAGGGACGGTTG TAA CAGTCGTCCCTCA TTTTTAATAAGAAGA TERM 465 416381 - 416353 - T 100 -11.7 -5.19261 | opp_overlap 416353 AAACTTATGAAAAAA TGAGGGACGGTTG TAA CAGTCGTCCCTCA TTTTTAATAAGAAGA TERM 466 416383 - 416406 + T 74 -4 -5.20154 | ACAGTCGTCCCTCAT TTTTAATAAG AAGA CTTAATAAAA TTTTTTACCTTGTAT Cthe_0328 418029 - 416428 - | peptide chain release factor 3 TERM 467 418368 - 418354 - H 70 -4.4 -4.85599 | CCTAGGGTACAAAAA TATTAA TAT TTAATA AAGACTGATTATTGA TERM 468 419112 - 419086 - H 83 -6.8 -4.88495 | opp_overlap 419092 ATATATATAAGAAAA GAAAAATGAAAA CTC TTTTTATTTTTC AAAATTTTCAAAGAT Cthe_0329 419240 - 420076 + | hypothetical protein Cthe_0330 420305 - 420688 + | hypothetical protein Cthe_0331 420777 - 421214 + | hypothetical protein TERM 469 422125 - 422083 - g 75 -2.8 -5.35459 | opp_overlap 422093, overlap 422085 422088 422112 422113 AGACATGATAAAAAA CAGAATGAAAGAAATTGTCA ATT TGAAAATTCCTTTCATAAAG AAGATAATGTCTCTT TERM 470 422120 - 422088 - g 89 -10.1 -4.23386 | opp_overlap 422093, overlap 422085 422083 422112 422113 TGATAAAAAACAGAA TGAAAGAAATTGTCA ATT TGAAAATTCCTTTCA TAAAGAAGATAATGT Cthe_0332 421697 - 423370 + | phosphoribulokinase/uridine kinase Cthe_0333 423503 - 423856 + | hypothetical protein Cthe_0334 423853 - 424302 + | putative anti-sigma regulatory factor, serine/threonine protein kinase TERM 471 425284 - 425267 - g 75 -5.7 -4.83169 | ATGTTGCCAGAAAAA CAATAAA GAAA TTTATTG ATGATGCAAAAGAAA Cthe_0335 424321 - 425667 + | hydrogenase large subunit-like protein Cthe_0336 425667 - 425996 + | DRTGG domain-containing protein TERM 472 426585 - 426571 - g 71 -4.2 -4.84761 | ATATCTTGAGAAAAA CCCCCA TCT TGGAAG ATTTAATTTTATCAG Cthe_0337 425993 - 426703 + | PHP-like protein Cthe_0338 426965 - 427462 + | NADH-quinone oxidoreductase, E subunit Cthe_0339 427459 - 428025 + | histidine kinase Cthe_0340 428009 - 428377 + | ferredoxin Cthe_0341 428410 - 430203 + | NADH dehydrogenase (quinone) Cthe_0342 430223 - 431971 + | hydrogenase, Fe-only TERM 473 432018 - 432002 - f 72 -5.1 -4.77719 | opp_overlap 432004, overlap 432004 GAAAACTTAAGAAAA CGGGAAA CTA TTTCCTG TTGAGAATGTGAAAT TERM 474 432082 - 432059 - f 82 -11 -2.60909 | opp_overlap 432059, overlap 432058 432056 AAAGTGATATAATAG GGTCAGGCGT ACAG AAGCCTGACC TTTTTGCAAAATTGT TERM 475 432059 - 432082 + F 100 -11 -4.60255 | opp_overlap 432059 432058 432056 AAAGTGATATAATAG GGTCAGGCGT ACAG AAGCCTGACC TTTTTGCAAAATTGT Cthe_0343 432224 - 432826 + | flavin reductase-like, FMN-binding TERM 476 432848 - 432818 - T 100 -9.8 -5.69793 | opp_overlap 432818 AGATTAAATAAAAAA GACAGGTAAAGG AGTAAAA CCTTTGCCTGTC TTTTTTATTTTAGTA TERM 477 432818 - 432848 + T 100 -12 -5.83211 | opp_overlap 432818 AGATTAAATAAAAAA GACAGGTAAAGG AGTAAAA CCTTTGCCTGTC TTTTTTATTTTAGTA Cthe_0344 434057 - 432885 - | malate dehydrogenase TERM 478 432911 - 432937 + g 72 -9.4 -2.94422 | opp_overlap 432926, overlap 432911 432913 CAACTCCGGTTTTTC TTGCTGCTTCAG CAA CTGCTGCAGCAA CTGTTTTTCCGACTC TERM 479 432913 - 432938 + g 71 -7.5 -3.91908 | opp_overlap 432926, overlap 432911 432911 ACTCCGGTTTTTCTT GCTGCTTCAGC AACT GCTGCAGCAAC TGTTTTTCCGACTCT TERM 480 433334 - 433348 + g 79 -8.6 -4.11216 | GAGTACCTTTCTTTT TCTCGA GGT TCGAGA TTTTAGCAATCAGGG TERM 481 433597 - 433611 + g 72 -8.6 -3.48144 | TCATCATGGAATATT GGAATG TCA CATTCC TCTTTGAGTCTTCTT TERM 482 433855 - 433841 - G 71 -7 -4.11216 | CTCCGAGCCCTAAAA CCGCCG TAC CGTCGG TAATAACCGCTACCA Cthe_0345 435066 - 434110 - | malate dehydrogenase (NAD) TERM 483 435140 - 435164 + H 86 -10.1 -3.58914 | opp_overlap 435137, overlap 435143 TAATTCTTTAAATTT TAACTGTGAAC CCG GTTCACAGGTA TTATCATTAATTTCA TERM 484 435143 - 435161 + H 87 -11.8 -2.60562 | opp_overlap 435137, overlap 435140 TTCTTTAAATTTTAA CTGTGAAC CCG GTTCACAG GTATTATCATTAATT Cthe_0346 435595 - 435948 + | hypothetical protein TERM 485 435968 - 435936 - T 83 -7 -4.86621 | gap 1, opp_overlap 435937, overlap 435939 ATGTGTAAGGAAAAA CAAGACCGCCTGAGT TCTC ACCCAGACGGTCG-G TATTGGCAGTTTCAC TERM 486 435966 - 435939 - T 100 -14.2 -4.53777 | opp_overlap 435937, overlap 435936 TGTAAGGAAAAACAA GACCGCCTGAGT TCTC ACCCAGACGGTC GGTATTGGCAGTTTC Cthe_0347 437267 - 436020 - | 6-phosphofructokinase TERM 487 436499 - 436515 + g 89 -6.6 -5.22289 | GGTCTGAACCGTATT CGGAAA TATAT TTTCCG TTTTTGTCTTTGATA Cthe_0348 438680 - 437610 - | integrase catalytic subunit TERM 488 438021 - 438031 + g 74 -4.6 -4.90013 | opp_overlap 438021 CAAAAGAAACAATAA CTCG TAG CGGG TTTTTCGTTCAGTTA TERM 489 438960 - 438949 - g 81 -5.8 -5.07107 | GAAATGTTTAAAAAA GCCT ACGA AGGC AAATACGCTATAGGT Cthe_0349 438913 - 439842 + | fructose-bisphosphate aldolase TERM 490 439899 - 439863 - f 80 -9.5 -3.51161 | opp_overlap 439863 439869, overlap 439867 439869 CAAATTGTGATATAA TAAATAGTGGAGGTCGG TTG CTGACCTTCACTTTTTA TGTTTACTAATAAAT TERM 491 439863 - 439899 + F 100 -13.9 -3.48292 | opp_overlap 439863 439867 439869, overlap 439869 CAAATTGTGATATAA TAAATAGTGGAGGTCGG TTG CTGACCTTCACTTTTTA TGTTTACTAATAAAT TERM 492 439895 - 439867 - f 72 -5.9 -4.38927 | opp_overlap 439863 439869, overlap 439863 439869 TTGTGATATAATAAA TAGTGGAGGTCGG TTG CTGACCTTCACTT TTTATGTTTACTAAT TERM 493 439893 - 439869 - f 79 -8.5 -3.79864 | opp_overlap 439863 439869, overlap 439867 439863 GTGATATAATAAATA GTGGAGGTCGG TTG CTGACCTTCAC TTTTTATGTTTACTA TERM 494 439869 - 439893 + F 100 -12.9 -5.22289 | opp_overlap 439869 439867 439863, overlap 439863 GTGATATAATAAATA GTGGAGGTCGG TTG CTGACCTTCAC TTTTTATGTTTACTA Cthe_0350 439924 - 440505 + | signal peptidase I TERM 495 440523 - 440542 + F 74 -5.7 -4.62441 | opp_overlap 440523 CAAATGTTTTTAAAA GCTCGGA TGTCAT TCTGAGC TTTGTTTATATAAAA TERM 496 440691 - 440673 - f 70 -4 -5.08169 | ATACATTGTAAAAAA TTAATTTT GCA AAAACTAA TCTTTGAGTGAAATT TERM 497 440894 - 440906 + G 71 -6.3 -4.14472 | ACAAGCCCCAGGAGT CCAAA GAG TTTGG TTTTCAGGCTCTTAA TERM 498 441751 - 441741 - g 78 -4 -5.29716 | GGAATACAAGAAAAA CTAT GAT ATAG AGATAACGGATCCGG Cthe_0351 440776 - 442167 + | PpiC-type peptidyl-prolyl cis-trans isomerase TERM 499 443098 - 443082 - gf 74 -3.7 -5.16841 | GGAGAGTAAGAAAAA CAAAGGA TGT TCCTTTT ATAATTCTGACATTG Cthe_0352 442226 - 443218 + | hypothetical protein TERM 500 443609 - 443597 - gf 93 -6.3 -5.52096 | AAAGGTAATAAAAAA CACAA CTA TTGTG GCCCAAAGGGTGGAT Cthe_0353 443190 - 444305 + | hypothetical protein Cthe_0354 444274 - 445263 + | putative CoA-substrate-specific enzyme activase Cthe_0355 445334 - 446512 + | hypothetical protein TERM 501 446578 - 446537 - f 74 -9.7 -2.69151 | gap 1, opp_overlap 446542, overlap 446542 TCCGTGCAGATATTA TAAAAGGGGAG-AAGATTCA ATG CAAATCTTTCTCCCCTTTTT AGAAATGAATGAGAT TERM 502 446573 - 446542 - f 91 -9.6 -4.53163 | gap 1, opp_overlap 446542, overlap 446537 GCAGATATTATAAAA GGGGAG-AAGATTCA ATG CAAATCTTTCTCCCC TTTTTAGAAATGAAT TERM 503 446542 - 446573 + F 85 -8.2 -4.60041 | gap 1, opp_overlap 446542 446537 GCAGATATTATAAAA GGGGAGAA-GATT CAATGCA AATCTTTCTCCCC TTTTTAGAAATGAAT TERM 504 447153 - 447165 + G 73 -7.7 -3.90586 | opp_overlap 447152 447153 GAGTGGCAGAAAAGG CCTCT GGG AGAGG TTTATCCGATAGTAT Cthe_0356 446664 - 447887 + | transposase, mutator type TERM 505 447934 - 447893 - T 73 -8.2 -3.49777 | opp_overlap 447888 447894 447895, overlap 447897 GCGTATATAGTATAA TCA-AGGGGTTCAGGGAAAC TCTG GTTTCC-TGAACCCCCCTGT AATATTTTATACGCA TERM 506 447894 - 447933 + T 83 -10.8 -2.98387 | gap 1, opp_overlap 447893 447897, overlap 447888 447895 CGTATATAGTATAAT CA-AGGGGTTCAGGGAAAC TCT GGTTTCCTGAACCCCCCTG TAATATTTTATACGC TERM 507 447895 - 447931 + T 81 -10.1 -3.03972 | opp_overlap 447893 447897, overlap 447894 447888 GTATATAGTATAATC AAGGGGTTCAGGGAAAC TCT GGTTTCCTGAACCCCCC TGTAATATTTTATAC TERM 508 447929 - 447897 - T 100 -15.8 -3.49182 | gap 1, opp_overlap 447895 447894 447888, overlap 447893 ATATAGTATAATCAA GGGGTTCAGGGAAAC TCTG GTTTCC-TGAACCCC CCTGTAATATTTTAT TERM 509 447978 - 447997 + T 83 -8 -4.26188 | opp_overlap 447981, overlap 447967 ATTTTTCTTTTGTAA GAATTTCT TATC AGAAATTC TTTTGAATCTATAAA Cthe_0357 450690 - 448123 - | alpha-glucan phosphorylases TERM 510 449544 - 449566 + g 70 -2.7 -5.00895 | gap 1 TGTTTCTTGATACTG CGCCGTGAAG CTCG CTT-ACGCCG TTTTTCTGTCCTGCC TERM 511 450483 - 450496 + g 84 -6.7 -4.92314 | overlap 450477 AATCAGGGTCTTTAA GCTTG GCTT CAAGC TTTTTCTGGCTTACT Cthe_0358 451547 - 451014 - | hypothetical protein TERM 512 451528 - 451510 - G 70 -3.3 -4.89054 | opp_overlap 451510 451510 451519 TTTATAAAAAAAGAA TTAAATT TGTTT AATTTAA ATTCTGCTACTTTAG Cthe_0359 451785 - 452186 + | hypothetical protein TERM 513 452250 - 452297 + F 90 -5 -5.7946 | opp_overlap 452235 TAAGCAGATGAAATG CGCTTAAAAATCCGGTGCCT TGACAATT GGGTATCGGATTTTTGAGTA TTTTTTTATTGAGAA Cthe_0360 452538 - 452867 + | thioredoxin TERM 514 452929 - 452952 + F 93 -8.3 -5.18355 | CATGCTTTCTATCAG CCATACATT ATTTAA AATGTATGG TTTTTGCTTTTTGAA Cthe_0361 453090 - 453656 + | hypothetical protein TERM 515 453906 - 453873 - f 83 -9.8 -3.85698 | CTTCTCCTTGAGAAA TTGAGTTTCCTAAA TATTTG TTTGGGAAACTCAA AAGTAGAGGAAGACG TERM 516 454038 - 454069 + F 93 -8.1 -5.28561 | TGGTAACGCGGAATG CTCCTTCGTCC CTTGCTTTTA GGATGAAGGAG TTTTTATTATATGTT Cthe_0362 454172 - 454651 + | AsnC family transcriptional regulator Cthe_0363 454648 - 455820 + | aminotransferase TERM 517 455854 - 455880 + F 100 -13.8 -5.08824 | opp_overlap 455854 CTCTGGTTTTGGAAA GCTTGAGAAGCT TTT GGCTTCTCAGGC TTTTTTGAATAAAAA TERM 518 455880 - 455854 - f 87 -10.9 -3.53012 | opp_overlap 455854 CTCTGGTTTTGGAAA GCTTGAGAAGC TTTTG GCTTCTCAGGC TTTTTTGAATAAAAA TERM 519 455922 - 455898 - f 100 -10.2 -5.7946 | TTTTGAATAAAAAAA TGTACTATGT ATAAA ACATAGTACA AAAAAACAGAAATTC TERM 520 456484 - 456470 - f 76 -3.6 -5.4505 | opp_overlap 456482 GCTGTCAATAAAAAA TCAACA ATT TGTTAA CATTTTGTTGCTTTG TERM 521 457163 - 457175 + G 82 -7.7 -4.61231 | ATTCAGGATGCAGGC CTTCC TGT GGAAG TTTTTAAACCTCTCA Cthe_0364 456551 - 457246 + | XRE family transcriptional regulator Cthe_0365 457554 - 458627 + | peptide chain release factor 2 TERM 522 458683 - 458718 + T 100 -15.6 -2.88032 | opp_overlap 458689, overlap 458689 AGCGGTTTAATTATG ACAAAAGTCTGCGGCT TTAA AGCTGCAGACTTTTGA ATTTGGCTCTTATTA TERM 523 458712 - 458689 - T 100 -11 -4.51097 | opp_overlap 458683 458689 TTAATTATGACAAAA GTCTGCGGCT TTAA AGCTGCAGAC TTTTGAATTTGGCTC TERM 524 458689 - 458712 + T 100 -13.2 -4.36595 | opp_overlap 458689, overlap 458683 TTAATTATGACAAAA GTCTGCGGCT TTAA AGCTGCAGAC TTTTGAATTTGGCTC Cthe_0366 461514 - 458737 - | hypothetical protein TERM 525 459355 - 459375 + g 73 -6.9 -4.14056 | opp_overlap 459349 459358, overlap 459358 AAGAATTAACTTGAA GCAGTTTTC CAG GAAAACTAC TTTCTGATTTCGAGT Cthe_0367 461825 - 462694 + | NADP oxidoreductase, coenzyme F420-dependent Cthe_0368 462722 - 463468 + | NCAIR mutase (PurE)-related protein Cthe_0369 463483 - 464706 + | hypothetical protein TERM 526 464727 - 464694 - g 81 -7.1 -4.53774 | gap 1, opp_overlap 464704 AGAAAGGAATGAAAA TGCTTTACAATAAGTT TTC AACTTATT-TAAAACA AAAATATGGCACAAA Cthe_0370 464693 - 465634 + | putative radical SAM protein TERM 527 465974 - 465955 - T 83 -8 -4.26188 | opp_overlap 465958, overlap 465972 TTTATAGATTCAAAA GAATTTCT GATA AGAAATTC TTACAAAAGAAAAAT TERM 528 466018 - 466059 + T 73 -8.2 -3.49777 | opp_overlap 466014 466019 466021, overlap 466023 TGCGTATAAAATATT ACAGGGGGGTTCA-GGAAAC CAGA GTTTCCCTGAACCCCT-TGA TTATACTATATACGC TERM 529 466058 - 466019 - T 83 -10.8 -2.98387 | gap 1, opp_overlap 466018 466023, overlap 466014 466021 GCGTATAAAATATTA CAGGGGGGTTCAGGAAACC AGA GTTTCCCTGAACCCCT-TG ATTATACTATATACG TERM 530 466057 - 466021 - T 81 -10.1 -3.03972 | opp_overlap 466018 466023, overlap 466019 466014 GTATAAAATATTACA GGGGGGTTCAGGAAACC AGA GTTTCCCTGAACCCCTT GATTATACTATATAC TERM 531 466023 - 466055 + T 100 -15.8 -3.49182 | gap 1, opp_overlap 466021 466019 466014, overlap 466018 ATAAAATATTACAGG GGGGTTCA-GGAAAC CAGA GTTTCCCTGAACCCC TTGATTATACTATAT Cthe_0371 467288 - 466065 - | transposase, mutator type TERM 532 466799 - 466787 - G 73 -7.7 -3.90586 | opp_overlap 466787 466786 ATACTATCGGATAAA CCTCT CCC AGAGG CCTTTTCTGCCACTC Cthe_0372 468854 - 467460 - | sulfide dehydrogenase (flavoprotein) subunit SudA Cthe_0373 469692 - 468847 - | ferredoxin--NADP(+) reductase subunit alpha TERM 533 469314 - 469335 + g 74 -3.7 -5.0538 | gap 1 CCGCTATCGTATGGA CTTCAACACC CAT GGAGT-GAAG TTTTTTGGCCTGGGG Cthe_0374 470198 - 471532 + | glutamate dehydrogenase TERM 534 471565 - 471591 + F 100 -10.9 -5.56673 | opp_overlap 471564 AAAATTGAAAATACG GGAGTCGGAGG TCATT TCTCTGACTCC TTTTTTCTTCTGCGT TERM 535 472315 - 472297 - g 78 -7.4 -4.37092 | opp_overlap 472305 ACTTCCTCTACAAAA TCTGCGGA TGT TCCGGAGA CTGGAAGATGGCTTC guaA 471732 - 473267 + | bifunctional GMP synthase/glutamine amidotransferase protein TERM 536 473300 - 473342 + F 70 -4.3 -4.90136 | gap 1, overlap 473305 TGTATGTTACAGGTA AAAAAGCAGTGGGACAAGAT ATTT AATTTGTCC-GCTGCTTTTA TTTTTGCTCTTACTT TERM 537 473305 - 473337 + F 77 -4.2 -5.32396 | gap 1, overlap 473300 GTTACAGGTAAAAAA GCAGTGGGACAAGAT ATTT AATTTGTCC-GCTGC TTTTATTTTTGCTCT TERM 538 473403 - 473380 - f 82 -11.2 -2.61383 | overlap 473379 ACTCTTATTGACAAT TCTAGACTAT TATG ATAGTCTAGA CTATAGAGATAGTCT TERM 539 473589 - 473578 - g 76 -4.4 -5.14965 | ACTGTTATTAAAAAA CTTG AAAG CAAG GGGTATATCAAAAGG Cthe_0376 473437 - 473790 + | CopY family transcriptional regulator TERM 540 474013 - 474029 + G 73 -7.3 -3.97356 | ACTACAAAAAGTGTA GTTCTGT ATG ACGGAAC TTTGGATTTTAGTTT TERM 541 474601 - 474590 - g 72 -4.4 -4.72272 | opp_overlap 474550, overlap 474551 TCGGTGGAGCAAAAA TACG GGTG CGTA TTGACCGTATTTTGT Cthe_0377 473797 - 474705 + | peptidase M56, BlaR1 Cthe_0378 474719 - 475327 + | hypothetical protein TERM 542 475870 - 475885 + G 72 -3.2 -5.09762 | AAGGCATTGATTTTT CAGGCA CTAT TGACTG TTTTGTTTCTTGGGC TERM 543 476140 - 476157 + G 78 -4.1 -5.27335 | overlap 476142 CTCAGCGGCCATTTG TACCGTT TTGG AACGGGA TTTTTGTTTGAGGAA Cthe_0379 475324 - 476286 + | hypothetical protein Cthe_0380 476412 - 476651 + | hypothetical protein Cthe_0381 476668 - 477390 + | hypothetical protein Cthe_0382 477637 - 478119 + | hypothetical protein Cthe_0383 478183 - 478779 + | hypothetical protein TERM 544 479017 - 479005 - g 70 -3.3 -4.9138 | opp_overlap 479005 AGGATGTAAACAAAA TGGCC AGG GGCAA GTTTCACAAATTAAG Cthe_0384 478779 - 479492 + | ABC transporter related protein Cthe_0385 479998 - 479741 - | hypothetical protein TERM 545 480037 - 480023 - H 74 -5.8 -4.72729 | opp_overlap 480028 TAATGAAAACTAAAA TTTTGT ATT ACAAAA TGAAATAATTAATTT Cthe_0386 480603 - 481208 + | hypothetical protein TERM 546 481314 - 481341 + F 83 -7 -4.87626 | opp_overlap 481314 ATGTGAACCTTAAAA TCCACCTCGC TGCTCTTT GAGAGGTGGA TTTTTCGTATTGGCG TERM 547 481341 - 481314 - f 74 -7 -4.19506 | opp_overlap 481314 ATGTGAACCTTAAAA TCCACCTCGC TGCTCTTT GAGAGGTGGA TTTTTCGTATTGGCG Cthe_0387 481555 - 482502 + | transposase, IS4 TERM 548 482959 - 482949 - g 71 -6.8 -4.01088 | TACAGGAAAATATAA CCTC TGT GAGG AACTAAAAGTTATGG TERM 549 483297 - 483317 + G 73 -7.5 -4.12188 | opp_overlap 483304 CAAAAAAGAAGATTT CGGAGAAGC GAT GCTTCGCTG TTTTGGACCTGATAA Cthe_0388 482647 - 483681 + | alcohol dehydrogenase GroES-like protein Cthe_0389 483719 - 484690 + | PfkB Cthe_0390 484746 - 485960 + | ROK domain-containing protein Cthe_0391 486278 - 487777 + | ABC transporter related protein Cthe_0392 487789 - 488838 + | inner-membrane translocator TERM 550 488902 - 488880 - f 72 -3.6 -5.20783 | overlap 488872 ACTGAAAGATAAAAA TACATTTT ATCCTTA AAAATGTA AGGAGGTAATTTTTC Cthe_0393 488918 - 489883 + | sugar ABC transporter (sugar-binding protein) Cthe_0394 489921 - 491090 + | iron-containing alcohol dehydrogenase Cthe_0395 491074 - 491529 + | RbsD or FucU transport TERM 551 491577 - 491617 + F 100 -16.3 -2.82862 | opp_overlap 491578 491586, overlap 491586 TAAATACTAAATTTA ATGCGGAAAGCACTTGGGA ATG TCCCAGGTGCTTTTTGCAG ATTTCAGTGATTAAT TERM 552 491616 - 491578 - f 100 -13.2 -3.33833 | opp_overlap 491577 491586, overlap 491586 AAATACTAAATTTAA TGCGGAAAGCACTTGGGA ATG TCCCAGGTGCTTTTTGCA GATTTCAGTGATTAA TERM 553 491586 - 491608 + F 100 -14.2 -4.64657 | opp_overlap 491578 491586, overlap 491577 AATTTAATGCGGAAA GCACTTGGGA ATG TCCCAGGTGC TTTTTGCAGATTTCA TERM 554 491608 - 491586 - f 95 -12 -3.61536 | opp_overlap 491586 491577, overlap 491578 AATTTAATGCGGAAA GCACTTGGGA ATG TCCCAGGTGC TTTTTGCAGATTTCA TERM 555 492861 - 492850 - g 73 -5.8 -4.49311 | overlap 492851 ATTAGCATTACAAAA GCTG TTGC CAGC GCCAACCGTATCAGT Cthe_0396 491956 - 493680 + | ABC transporter related protein Cthe_0397 493682 - 495442 + | ABC transporter related protein TERM 556 495499 - 495486 - f 70 -3.9 -5.07971 | TAAAAGAATGAAAAA TGAAA GTAA TTTCA TATGGATATGGTAAT Cthe_0398 495575 - 495895 + | hypothetical protein Cthe_0399 496871 - 496035 - | hypothetical protein Cthe_0400 497883 - 496855 - | hypothetical protein TERM 557 496957 - 496945 - G 70 -9.1 -3.11024 | overlap 496944 TTTCGGAAGACAAAG CGGAG TGT CTCCG ACGACTTTTCCGGTT TERM 558 500296 - 500261 - g 72 -8.4 -3.54691 | overlap 500264 AAGACAGATCAAAGA GATTTCAGAACAAACA AAAT TGATTGCTCTGAATTC AGCTATTGAGTCAGC Cthe_0401 498519 - 500786 + | methyl-accepting chemotaxis sensory transducer TERM 559 500842 - 500883 + F 100 -18.2 -3.98649 | TTATACGGTTAATTT CAGGGTTAACTGCCCG AGTCGGTAAG CGGGCGGTTAACCCTG TTGTTCTGTATTATC TERM 560 501888 - 501905 + G 73 -7.1 -4.13767 | opp_overlap 501888 501887 TGACGGCAAAAATAT TTATCTG ATTG CAGATAA TTTTGCAATGGGACA Cthe_0402 501043 - 503241 + | copper amine oxidase-like protein TERM 561 503280 - 503318 + F 87 -11.2 -3.37796 | opp_overlap 503286, overlap 503286 AATTTTATAAAGCGG TCAAAAGGGAGTATCCTT CAA ATGGATATTCCCTTTTCA TTATGCCTGGTAAAC TERM 562 503312 - 503286 - f 79 -8 -4.13343 | opp_overlap 503280 503286 ATAAAGCGGTCAAAA GGGAGTATCCTT CAA ATGGATATTCCC TTTTCATTATGCCTG TERM 563 503286 - 503312 + F 93 -10.2 -4.50058 | opp_overlap 503286, overlap 503280 ATAAAGCGGTCAAAA GGGAGTATCCTT CAA ATGGATATTCCC TTTTCATTATGCCTG TERM 564 503517 - 503501 - g 84 -2.2 -5.86965 | overlap 503503 ATGGAGTAAAAAAAA GGGAGA AAAAG TCTCGC TCTGACTCTATAAAT Cthe_0403 503401 - 504225 + | putative RNA polymerase sigma factor SigI Cthe_0404 504225 - 505793 + | type 3a, cellulose-binding TERM 565 507036 - 507022 - g 73 -10 -2.88054 | overlap 507021 TGCTATAATGCAAAT TCCGGT GAT ACCGGA GGACTTGTATACTAT Cthe_0405 505876 - 507456 + | glycoside hydrolase family protein Cthe_0406 508219 - 507482 - | hypothetical protein TERM 566 507785 - 507805 + g 73 -8.2 -3.8046 | GTAGACAGGGCTGTA GGGGGCAT AGTAA AGGCCCCC TTTCAACTTTTTAAA Cthe_0407 509556 - 508249 - | radical SAM family protein TERM 567 509433 - 509470 + g 78 -2.7 -5.49569 | gap 1 ACCAGCTATGGCATA TACCGAAAGATG-CTGCG TTT CCCAGGCCTCCTTTGGTA TTTTTTCTGTTGCTG TERM 568 511144 - 511161 + G 70 -3.4 -5.00616 | ATGACCCGCTGACAG GGCTTC CCAACA GAAGTC TTTTTTCCGACCGCC TERM 569 511984 - 512004 + G 75 -8.2 -4.11216 | opp_overlap 511976 ACAGAATTCGCAGTA GCACCGGT TTGGC ACCGGAGC TTTTGGAGCTGGAAA Cthe_0408 509847 - 512435 + | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) Cthe_0409 512502 - 512771 + | hypothetical protein TERM 570 513327 - 513344 + G 80 -7.7 -4.31587 | overlap 513324 GCGCTGACAGTGGAG GTTTGGC ATGT GCCAAGC TTGTTGTTTTTGCCA Cthe_0410 512786 - 514144 + | hypothetical protein TERM 571 514301 - 514278 - T 74 -3.9 -5.2197 | opp_overlap 514273 514278, overlap 514271 TACAAAAAGCAAAAA GTCTGATTT TGCCCC ATATCAGAC TTTTCTTTTGCTTTT TERM 572 514278 - 514301 + T 74 -3.9 -5.24291 | opp_overlap 514271 514278, overlap 514273 TACAAAAAGCAAAAA GTCTGATTT TGCCCC ATATCAGAC TTTTCTTTTGCTTTT Cthe_0411 515349 - 514315 - | hypothetical protein TERM 573 515002 - 515025 + g 74 -3.8 -5.16237 | opp_overlap 515005, overlap 515005 ACAATAGACATAATT GAACTTGCTG GATA CAACAAGATC TTTTTTACTGAGATT TERM 574 518422 - 518406 - g 71 -6.5 -4.15044 | opp_overlap 518407, overlap 518407 CCTGTTGGGAAGAAA CGGACTG GAT CAGTCCT ATGTAACAGGGTATG TERM 575 518407 - 518421 + G 73 -10 -2.87683 | opp_overlap 518406 518407 CTGTTGGGAAGAAAC GGACTG GAT CAGTCC TATGTAACAGGGTAT TERM 576 518421 - 518407 - g 75 -10 -3.08812 | opp_overlap 518407, overlap 518406 CTGTTGGGAAGAAAC GGACTG GAT CAGTCC TATGTAACAGGGTAT Cthe_0412 516253 - 518940 + | glycoside hydrolase family protein TERM 577 519009 - 518962 - f 100 -22.6 -3.59023 | gap 1, opp_overlap 518977 518995, overlap 518977 GCCATATAATGATAA TCTGTTATAAAAAAAGAACCGGT TTT ACCGGTTCTTTTTTTATAAC-GA AAAAAGGTCATTCCT TERM 578 518995 - 518977 - f 100 -13.2 -5.60993 | opp_overlap 518977, overlap 518962 TCTGTTATAAAAAAA GAACCGGT TTT ACCGGTTC TTTTTTTATAACGAA TERM 579 518977 - 518995 + F 100 -13.2 -5.60993 | opp_overlap 518962 518977 TCTGTTATAAAAAAA GAACCGGT TTT ACCGGTTC TTTTTTTATAACGAA TERM 580 519364 - 519374 + F 84 -5.4 -5.33921 | opp_overlap 519364, overlap 519357 TGAACTCATAAGAAG GGTT GTA AACC TTTTTTAATTAGTTT Cthe_0413 519467 - 523141 + | glycoside hydrolase family protein TERM 581 523165 - 523184 + T 100 -11.4 -4.67904 | opp_overlap 523157 523168 GAAATTATTTGTGAA GGACCGGT TTTT GCCGGTCC TTTTTAAAATTAATA TERM 582 523263 - 523281 + T 74 -3.1 -5.47218 | TTCATCTTTTGTACG CCGGATT CATGC AATCGGG TTTTTTTACATAGAA Cthe_0414 523860 - 523249 - | manganese containing catalase Cthe_0415 524168 - 523923 - | spore coat protein CotJB Cthe_0416 524438 - 524181 - | hypothetical protein rpsO 524713 - 524976 + | 30S ribosomal protein S15 TERM 583 524977 - 525004 + F 82 -10 -3.23869 | opp_overlap 524977 524983 524984, overlap 524984 AATCTCAGGAAATAA TAAAAAGGCGGA GTAA TCCGCTTTTTTG TATTATCACATCATA TERM 584 524998 - 524983 - f 81 -4.6 -5.39905 | opp_overlap 524977 524984, overlap 524977 524984 AGGAAATAATAAAAA GGCGGA GTAA TCCGCT TTTTTGTATTATCAC TERM 585 524984 - 524997 + F 100 -8.1 -5.5208 | opp_overlap 524983 524977 524984, overlap 524977 GGAAATAATAAAAAG GCGGA GTAA TCCGC TTTTTTGTATTATCA TERM 586 524997 - 524984 - f 77 -8.1 -3.81503 | opp_overlap 524984 524977, overlap 524983 524977 GGAAATAATAAAAAG GCGGA GTAA TCCGC TTTTTTGTATTATCA TERM 587 526465 - 526481 + G 70 -9.5 -2.70275 | opp_overlap 526464 526463 AAGTGAAGAAGAATT CCCTTAT ACA ATAAGGG TGGTATCTGAAGTTC Cthe_0418 525212 - 527314 + | polynucleotide phosphorylase/polyadenylase Cthe_0419 527446 - 528705 + | peptidase M16-like protein TERM 588 528717 - 528743 + F 93 -6.5 -5.66684 | opp_overlap 528717 TTAAAGGGCAAAAAT CCTCGATTCCA ATTAG TGGTGTCGGGG TTTTTTTATGCCTTG Cthe_0420 528909 - 529781 + | dipicolinate synthase subunit A spoVFB 529786 - 530370 + | dipicolinate synthase subunit B TERM 589 530404 - 530429 + F 100 -8.3 -6.14618 | opp_overlap 530404 CGGTTTTAATAAGAA GCAGGAGCTAA AATT TTAGCTTCCGC TTTTTTTATTTTCTC TERM 590 530429 - 530404 - f 77 -8.3 -3.9461 | opp_overlap 530404 CGGTTTTAATAAGAA GCAGGAGCTAA AATT TTAGCTTCCGC TTTTTTTATTTTCTC TERM 591 530438 - 530450 + F 75 -4.9 -4.96501 | CTTCCGCTTTTTTTA TTTTC TCA GAAAA TTTATTTTTGTGAAA TERM 592 530596 - 530575 - f 81 -3.8 -5.65177 | overlap 530561 ATATCGATAAAAAAA TACCGATA AATAAA TATCGATA TCAATAATCTTATAG Cthe_0422 530687 - 531370 + | redox-sensing transcriptional repressor Rex TERM 593 531642 - 531620 - g 70 -3.4 -4.8543 | overlap 531623 TAATGCGTACAAAAA CACTAAAACC TGC GGTGTTATTG AAGAGGACCCTGCTT TERM 594 533547 - 533563 + G 74 -4.3 -4.85599 | GTATGCCATTCAATG GCGCACA AAC TGGGTGC TTTTTATCACCTGCC Cthe_0423 531351 - 533972 + | bifunctional acetaldehyde-CoA/alcohol dehydrogenase Cthe_0424 533969 - 534718 + | aminoglycoside phosphotransferase Cthe_0425 534731 - 534976 + | hypothetical protein TERM 595 535985 - 535955 - g 80 -4.7 -5.27938 | AGCCGTAAATAAAAA CACCGGAGCAAAA GATTT TTCTGTCCCGATG CCCGAACCTGAAAAA Cthe_0426 535029 - 536699 + | putative PAS/PAC sensor protein Cthe_0427 536692 - 537861 + | serine phosphatase TERM 596 538042 - 538032 - g 82 -4 -5.41143 | TATCTTTCAAAAAAA CTTA AAG TAAG TGAAGCAAGGATATT Cthe_0428 537873 - 538370 + | NADH dehydrogenase (ubiquinone), 24 kDa subunit Cthe_0429 538363 - 540237 + | NADH dehydrogenase (quinone) TERM 597 540576 - 540566 - g 70 -5.4 -4.38637 | AATAACAACGGAAAA TGCA AAC TGCA GGATCTTGCGATGAG Cthe_0430 540242 - 541942 + | hydrogenase, Fe-only Cthe_0431 541944 - 542189 + | hypothetical protein TERM 598 542300 - 542259 - T 100 -23.3 -3.63991 | opp_overlap 542264 542270, overlap 542264 542270 GAGTATTTTTAATAA CCAAACTAAAAGGGCGGCT TTTT AGCTGCCCTTTTAGTTTGG AAAAAGAAATATTAA TERM 599 542295 - 542264 - T 100 -16 -4.07618 | opp_overlap 542264 542270, overlap 542259 542270 TTTTTAATAACCAAA CTAAAAGGGCGGCT TTTT AGCTGCCCTTTTAG TTTGGAAAAAGAAAT TERM 600 542264 - 542295 + T 100 -18.2 -3.53091 | opp_overlap 542264 542259 542270, overlap 542270 TTTTTAATAACCAAA CTAAAAGGGCGGCT TTTT AGCTGCCCTTTTAG TTTGGAAAAAGAAAT TERM 601 542289 - 542270 - T 90 -9.2 -4.62957 | opp_overlap 542264 542270, overlap 542264 542259 ATAACCAAACTAAAA GGGCGGCT TTTT AGCTGCCC TTTTAGTTTGGAAAA TERM 602 542270 - 542289 + T 100 -11.4 -4.54727 | opp_overlap 542270 542264 542259, overlap 542264 ATAACCAAACTAAAA GGGCGGCT TTTT AGCTGCCC TTTTAGTTTGGAAAA Cthe_0432 542989 - 542312 - | hypothetical protein TERM 603 543189 - 543179 - H 70 -4 -5.11836 | ATATGTAAAATAAAA CAAT TCA ATTG TAAAGAGAATTAAAA TERM 604 543598 - 543585 - g 88 -3.9 -5.76633 | overlap 543577 TGAGAGAGAAAAAAA TCTTT TCAA AAAGA ACAAAAGCATTAATA Cthe_0433 543569 - 545938 + | glycoside hydrolase family protein TERM 605 545963 - 545990 + F 100 -11.3 -5.64304 | opp_overlap 545962 545963 ACCAAAATGAAAGAC GAAGGCTGCCC TTTTTT GGGCGGTCTTC TTTTTTATTATCTTA Cthe_0434 546107 - 547207 + | ATPase TERM 606 547220 - 547242 + F 100 -9.2 -5.42862 | opp_overlap 547220 TGAATATAGATTAAA GGAGTCGGAA TTA TTTTGACTCC TTTTTTTACGAGTCT TERM 607 547311 - 547301 - f 80 -5.4 -5.31091 | TATAATAAAATAAAA GTTG GAA CAAC AAACAGATTTATACT TERM 608 547817 - 547837 + G 73 -8.3 -3.73042 | opp_overlap 547817, overlap 547815 CCTGCAAATACACAA TCCGGCATT TTG AATGACGGA TATTTTCCTCCGGGA TERM 609 547837 - 547817 - g 73 -8.3 -3.76232 | opp_overlap 547817 547815 CCTGCAAATACACAA TCCGGCATT TTG AATGACGGA TATTTTCCTCCGGGA Cthe_0435 547412 - 548464 + | cellulosome enzyme, dockerin type I TERM 610 550411 - 550401 - g 71 -4 -4.87592 | GGATATATAACAAAA TATC CCG GATA CAGAGAACCCTATCT TERM 611 551614 - 551592 - g 70 -9.2 -3.15579 | GGAATGTTTGATGAA GCAGTCAG CTCTTTT CTGACTGC AATTGAACTAAATGA Cthe_0436 548775 - 551945 + | tetratricopeptide TPR_2 Cthe_0437 551989 - 552447 + | hypothetical protein TERM 612 552505 - 552531 + F 100 -8.8 -5.86976 | opp_overlap 552505 ATACTAAATGACATA TCCCTGATAG TTCAATT CTGTCAGGGA TTTTTTATTTTGTGA Cthe_0438 552740 - 553126 + | cellulosome enzyme, dockerin type I TERM 613 553848 - 553820 - T 100 -10.4 -5.34632 | opp_overlap 553818 553814 AAGAAAAGATAAAAA GGTGACCTTG TTACTCTGC CAAGGTCACC CCATTATTCTTTTAA Cthe_0439 554590 - 553844 - | CobB/CobQ-like glutamine amidotransferase Cthe_0440 555995 - 554592 - | hypothetical protein TERM 614 555095 - 555077 - G 75 -9.6 -3.29144 | opp_overlap 555067, overlap 555094 CCATGGCTTTTACAA GGCTTTCC GGC GAAAAGCC TGAAAGATGTCCCAG TERM 615 555656 - 555676 + g 74 -4.8 -4.77757 | gap 1 AGGCAGCCTCGTCAA CTTCCAGCA ATGC TG-TGGAAG TTTTGCTTTTTCCGA Cthe_0441 556327 - 557190 + | UDP-N-acetylglucosamine 1-carboxyvinyltransferase Cthe_0442 557204 - 558064 + | cell division protein FtsQ TERM 616 558077 - 558087 + F 71 -5.4 -4.63675 | TAGAGAGGGAGGAGC GGAA TGA TTCC TTTATTTGGTTTGAT TERM 617 558347 - 558369 + G 71 -5 -4.49937 | GCTGCGATATTTGCT TTTGGAAACA GAC TGTTTTTAAA TTTTGCTGTTATTCG Cthe_0443 558080 - 558457 + | hypothetical protein TERM 618 558519 - 558503 - f 70 -8.1 -3.08679 | GGTGTTCAGGCAAGA CTTTTGA TTT TCAAAAG TAAAATTTTTACTAT TERM 619 559714 - 559696 - g 83 -3.1 -5.63517 | CCTGGAAATAAAAAA TGCCG AACATGTGA CGGCA ATGGCCACGGTAAAG Cthe_0444 558620 - 559861 + | cell division protein FtsA Cthe_0445 560151 - 561281 + | cell division protein FtsZ TERM 620 561335 - 561300 - f 100 -13.5 -4.44667 | opp_overlap 561301, overlap 561301 CTTTTCAACAATAAA GCACAGGAGTATATC GAAAAG GATATACTCCTGTGT TTTTTTGTCATAAGA TERM 621 561334 - 561301 - f 100 -17 -3.26318 | opp_overlap 561301, overlap 561300 TTTTCAACAATAAAG CACAGGAGTATATC GAAAAG GATATACTCCTGTG TTTTTTTGTCATAAG TERM 622 561301 - 561334 + F 100 -17 -5.67063 | opp_overlap 561300 561301 TTTTCAACAATAAAG CACAGGAGTATATC GAAAAG GATATACTCCTGTG TTTTTTTGTCATAAG TERM 623 561435 - 561418 - f 82 -4.9 -5.3321 | opp_overlap 561418 AATCAATAATAAAAA TACATGC TTTT GCATATA TGTTATTTAGGACAG Cthe_0446 561517 - 562410 + | peptidase U4, sporulation factor SpoIIGA Cthe_0447 562463 - 563197 + | sporulation sigma factor SigE TERM 624 563305 - 563349 + F 72 -2.4 -5.39721 | gap 2 GCAGTATAAAAATGA CCTCCGTGGCAATAATGATA CTGACTT TAA-ATTATTGCCG-GGAGG TTTTTTCTATGCTAG Cthe_0448 563358 - 564131 + | sporulation sigma factor SigG TERM 625 564251 - 564291 + F 85 -10.5 -3.39895 | TCGATAAATTTTGAA GGAGTCAGGGAGCGGAAAA CAT TTTGATGTTCTCTGACTCC TTAATTAATGGGACA Cthe_0449 564388 - 564648 + | hypothetical protein Cthe_0450 564796 - 565251 + | transcriptional regulator NrdR Cthe_0451 565307 - 567178 + | hypothetical protein Cthe_0452 567264 - 568037 + | cellulosome anchoring protein, cohesin region TERM 626 568066 - 568086 + F 93 -8.3 -5.30616 | opp_overlap 568066 ATACAAAAAAAGTAA GGGAGACTT AAA AGGTCTCTC TTTTTATTTGGCTAA Cthe_0453 568197 - 568637 + | hypothetical protein Cthe_0454 569107 - 568703 - | hypothetical protein TERM 627 569043 - 569058 + g 100 -9 -5.56264 | AAAATTGTTTTACAG TCAGGC TTTT GCCTGA TTTTTTCTATTTCCG TERM 628 570194 - 570221 + G 70 -7.8 -3.7511 | gap 1, opp_overlap 570192 570197 TAACAAAAATTCACA GTATT-GCTGGCA CTT TGCCCGCAAATAC TTCTCTTATCACCCA TERM 629 570217 - 570197 - g 70 -9.7 -2.71061 | opp_overlap 570194, overlap 570192 CAAAAATTCACAGTA TTGCTGGCA CTT TGCCCGCAA ATACTTCTCTTATCA Cthe_0455 569434 - 570972 + | Mg chelatase, subunit ChlI Cthe_0456 570989 - 571405 + | hypothetical protein Cthe_0457 571435 - 571797 + | hypothetical protein Cthe_0458 572004 - 572759 + | exodeoxyribonuclease III Xth Cthe_0459 572939 - 574051 + | DNA protecting protein DprA TERM 630 575159 - 575146 - g 90 -3.9 -5.95539 | TCCCAAAGAAAAAAA TGTTT ATAA AAACA AATCTGCCTCTCAGG Cthe_0460 574145 - 576253 + | DNA topoisomerase I TERM 631 576680 - 576700 + G 76 -6.9 -4.42386 | TCTTACATCCGGGGA TCTGTCAAA ACA TTTGGCGGA TTTTGTAGGTGAAGG TERM 632 577531 - 577505 - g 76 -3.6 -5.18409 | overlap 577509 TAAAAGAAAAAGAAA TTATGAGACGGC AAT GCGGGCTCTTAA GATTTTAAAAGAGTA Cthe_0461 576255 - 577565 + | gid protein Cthe_0462 578005 - 578409 + | flagellar basal-body rod protein FlgB Cthe_0463 578416 - 578859 + | flagellar basal-body rod protein FlgC Cthe_0464 578918 - 579232 + | flagellar hook-basal body complex subunit FliE Cthe_0465 579318 - 580871 + | flagellar M-ring protein FliF TERM 633 581349 - 581370 + G 89 -11.7 -3.49777 | TTGATTCTGTCGTAT TTGAAGCCT CAGC AGGCTTCAA TTGTCCTGTCTGCAC fliG 580923 - 581945 + | flagellar motor switch protein G Cthe_0467 581938 - 582729 + | flagellar biosynthesis/type III secretory pathway protein-like protein Cthe_0468 582774 - 584087 + | flagellar protein export ATPase FliI Cthe_0469 584109 - 584567 + | flagellar export protein FliJ Cthe_0470 584629 - 585459 + | hypothetical protein Cthe_0471 585504 - 587090 + | flagellar hook-length control protein Cthe_0472 587106 - 588077 + | flagellar hook capping protein Cthe_0473 588127 - 588516 + | flagellar operon protein Cthe_0474 588682 - 590004 + | protein of unknown function DUF1078-like protein TERM 634 590018 - 590054 + F 100 -13.8 -3.01684 | AGTATATAGGAGGAT GGGGAGTGTATGGTGG CCTGT CCGGCATACACTCTCC TGTATATAACTAATT Cthe_0475 590140 - 590430 + | flagellar protein Cthe_0476 590512 - 591015 + | hypothetical protein Cthe_0477 591028 - 592014 + | flagellar motor switch protein FliM TERM 635 592947 - 592933 - g 77 -8.6 -3.92522 | opp_overlap 592933 592932 CCGCAATCCTATAAA TGTGCA ACC TGCACA GTTTGAAGCTTTTGA Cthe_0478 592016 - 593236 + | flagellar motor switch protein Cthe_0479 593356 - 593718 + | response regulator receiver protein TERM 636 594190 - 594176 - g 73 -5.6 -4.63048 | opp_overlap 594176 594174 GTGAGAAAGAACAAA CCGGAA GTG TACCGG TATTTAATACAAATT Cthe_0480 593788 - 594285 + | hypothetical protein TERM 637 594559 - 594588 + G 74 -4.3 -4.86385 | gap 1, opp_overlap 594558 594554 594559, overlap 594562 TGGAACCCAACAAAT GC-CGCCGAATCAA GTT TTGATTGGGCTAGC TTTGTTTTTAACCCT fliP 594275 - 595057 + | flagellar biosynthesis protein FliP Cthe_0482 595110 - 595379 + | flagellar biosynthetic protein FliQ fliR 595409 - 596194 + | flagellar biosynthesis protein FliR TERM 638 596251 - 596241 - g 70 -2.6 -5.03145 | overlap 596245 GAAGTTTGGAAAAAA TAAA GAA TTTA AAATCCATCAAACAA TERM 639 596257 - 596245 - g 70 -2.7 -5.04249 | overlap 596241 TTTGGAAAAAATAAA GAATT TAA AATCC ATCAAACAAGTACCG TERM 640 596685 - 596707 + G 83 -6.4 -5.09225 | opp_overlap 596685 596706, overlap 596706 GCTAAGCAGGATTAA TCCTTTAAAA GGA TTTAAAAGGA TTTTTTCACTAAAAT Cthe_0484 596191 - 597369 + | flagellar biosynthetic protein FlhB Cthe_0485 597410 - 599440 + | flagellar biosynthesis protein FlhA Cthe_0486 599442 - 600653 + | GTP-binding signal recognition particle Cthe_0487 600654 - 601562 + | cobyrinic acid a,c-diamide synthase Cthe_0488 601605 - 602279 + | type IV pilus assembly PilZ Cthe_0489 602289 - 603353 + | response regulator receiver modulated CheB methylesterase TERM 641 603725 - 603697 - g 100 -16.3 -3.77119 | opp_overlap 603700 603702, overlap 603718 CAGCAATGAATATAA CGATATCATTAAG GAA CTTAATGATATCG TTCAAACGAAATCAT TERM 642 603700 - 603722 + G 76 -10.8 -2.71011 | opp_overlap 603697 603718, overlap 603702 CAATGAATATAACGA TATCATTAAG GAA CTTAATGATA TCGTTCAAACGAAAT TERM 643 604689 - 604671 - g 84 -6.7 -4.93333 | AACCAAAAGAGAAAA GACTTGC GATGG GCAAGCC TGCCGTCGGACATAT Cthe_0490 603353 - 605431 + | CheA signal transduction histidine kinases Cthe_0491 605448 - 605912 + | CheW protein Cthe_0492 605917 - 606537 + | CheC, inhibitor of MCP methylation Cthe_0493 606537 - 607022 + | chemoreceptor glutamine deamidase CheD Cthe_0494 607037 - 607435 + | hypothetical protein Cthe_0495 607486 - 608142 + | RNA polymerase, sigma 28 subunit Cthe_0496 608167 - 609279 + | integrase catalytic subunit TERM 644 609534 - 609521 - f 79 -3.7 -5.66868 | overlap 609522 AATCAAGCAAAAAAA GGGGG GATA CCCGC ATGAGAGATGTTACG TERM 645 610086 - 610063 - g 83 -5.2 -5.3472 | opp_overlap 610062 AAAAAAGAAAGAAAA CCTACTATCC TTGA GGATGGAAGG GTGGATTTCAGAGAA TERM 646 610145 - 610129 - g 76 -2.2 -5.49809 | GAAAGTGTAAAAAAA GGACAG GTTCT CTGTAC ACTGGTTCCTCCGCT Cthe_0498 609535 - 611163 + | hypothetical protein Cthe_0499 611190 - 611501 + | hypothetical protein Cthe_0500 611537 - 612121 + | hypothetical protein Cthe_0501 612153 - 612782 + | hypothetical protein TERM 647 612833 - 612853 + F 100 -6.2 -5.86976 | opp_overlap 612833 ACAGGGATTAAAAAA GAGCTTGA TAAAT TTAAGCTC TTTTTTATTTTGTGC TERM 648 612853 - 612833 - f 74 -4 -5.17353 | opp_overlap 612833 ACAGGGATTAAAAAA GAGCTTGA TAAAT TTAAGCTC TTTTTTATTTTGTGC TERM 649 613133 - 613144 + G 76 -7.2 -4.20136 | overlap 613129 TGAAAAGATTGTAGA GGCC GGAG GGCC TTTAGTTTTGGACAT Cthe_0502 612945 - 613811 + | hypothetical protein Cthe_0503 613963 - 614514 + | 2'-5' RNA ligase Cthe_0504 614616 - 615851 + | poly-gamma-glutamate biosynthesis protein TERM 650 616040 - 616064 + F 72 -8.8 -3.01712 | opp_overlap 616050, overlap 616042 CCTTTGTATTTTACT TATTGTACAA TATAT TTGTACAATA TATTAAGGAAAAAAA TERM 651 617878 - 617853 - g 85 -8.3 -4.44548 | opp_overlap 617853 GATACGCAATGAAAA CAACCTCGTTG TTGA CTACGAAGTTG AGGGTGATTATCCTA Cthe_0505 616237 - 618465 + | formate acetyltransferase Cthe_0506 618492 - 619208 + | pyruvate formate-lyase activating enzyme TERM 652 619201 - 619235 + T 100 -11.8 -5.47159 | opp_overlap 619206 AGAGGATTCTGTCAG GCAAATAATAAAAG CTTTTTT CTTTTATTATTTGC TTTTTTCTATTACCA Cthe_0507 619875 - 619228 - | exonuclease, RNase T and DNA polymerase III Cthe_0508 620131 - 620541 + | hypothetical protein TERM 653 620576 - 620605 + T 100 -8.9 -5.64421 | gap 1, opp_overlap 620576, overlap 620596 GAAAACAATAAAAAA CTATTAC-ACAATT AAA AATTGTTGTAATAG TTTTTTATTTAAACT TERM 654 620605 - 620576 - T 100 -8.9 -5.77677 | gap 1, opp_overlap 620576 620596 GAAAACAATAAAAAA CTATTAC-ACAATT AAA AATTGTTGTAATAG TTTTTTATTTAAACT Cthe_0509 621918 - 620839 - | sodium ion-translocating decarboxylase, beta subunit TERM 655 621912 - 621897 - G 71 -7.6 -3.82963 | CTGCAATAATAAACA TGGCAA TGTT TTGCCA ACTCATACAAAGTAT Cthe_0510 623443 - 622373 - | integrase catalytic subunit TERM 656 622784 - 622794 + g 74 -4.6 -4.90013 | opp_overlap 622784 CAAAAGAAACAATAA CTCG TAG CGGG TTTTTCGTTCAGTTA Cthe_0511 623795 - 625117 + | histidine kinase TERM 657 625133 - 625099 - T 100 -16 -5.16206 | opp_overlap 625099 625104, overlap 625104 AAAGGAAGACAAAAA GAAAAGCCTTGAAACT TAA AACTTCAAGGCTTTTC TTTTTGTTTGGTGCG TERM 658 625099 - 625133 + T 100 -11.7 -5.33405 | opp_overlap 625099 625104, overlap 625104 AAAGGAAGACAAAAA GAAAAGCCTTGAA ACTTAAAAC TTCAAGGCTTTTC TTTTTGTTTGGTGCG TERM 659 625128 - 625104 - T 100 -10.1 -5.40873 | opp_overlap 625099 625104, overlap 625099 AAGACAAAAAGAAAA GCCTTGAAACT TAA AACTTCAAGGC TTTTCTTTTTGTTTG TERM 660 625104 - 625128 + T 86 -5.8 -5.48028 | opp_overlap 625104 625099, overlap 625099 AAGACAAAAAGAAAA GCCTTGAA ACTTAAAAC TTCAAGGC TTTTCTTTTTGTTTG TERM 661 625704 - 625721 + T 100 -9.9 -6.06529 | AAAAGACAGCGTTGG TCCCCTT GTGT AAGGGGA TTTTTTTTATCTCTC Cthe_0512 627248 - 625728 - | phage integrase Cthe_0513 627568 - 627359 - | DNA binding domain-containing protein TERM 662 627863 - 627879 + G 87 -12.3 -3.32844 | opp_overlap 627863 AGGAAATGCAAAAAA GTGGTCG ATT CGACCAC TTGTCAAATACAGCG TERM 663 627879 - 627863 - g 100 -12.3 -5.22943 | opp_overlap 627863 AGGAAATGCAAAAAA GTGGTCG ATT CGACCAC TTGTCAAATACAGCG TERM 664 628028 - 628046 + G 84 -10.2 -3.90744 | opp_overlap 627991 628028 ACCCGCAGATAAAAA GCCCGTGC GTT GCACAGGC TTATTTAGCACGAGA TERM 665 628046 - 628028 - g 100 -12.4 -4.9725 | opp_overlap 628028, overlap 627991 ACCCGCAGATAAAAA GCCCGTGC GTT GCACAGGC TTATTTAGCACGAGA Cthe_0514 627622 - 628737 + | DNA methylase N-4/N-6 TERM 666 628908 - 628874 - T 85 -6.6 -5.01042 | gap 1, opp_overlap 628880, overlap 628880 AATTCAAAGCAAAAA TCTAAA-CCTCATCC TACTAC GGATGAGGTTTTAGT TATTTACGCTTCATG TERM 667 628901 - 628880 - T 90 -10.2 -4.02315 | opp_overlap 628880, overlap 628874 AAGCAAAAATCTAAA CCTCATCC TACTAC GGATGAGG TTTTAGTTATTTACG TERM 668 628880 - 628901 + T 93 -10.2 -4.62203 | opp_overlap 628880 628874 AAGCAAAAATCTAAA CCTCATCC TACTAC GGATGAGG TTTTAGTTATTTACG TERM 669 629316 - 629330 + T 76 -5.6 -4.946 | opp_overlap 629319, overlap 629317 TTGAATTTTTTGTAC ACACGC AAT GCGTGC TTTTTCATGTTTAAT TERM 670 629317 - 629329 + T 78 -9.1 -3.55133 | opp_overlap 629319, overlap 629316 TGAATTTTTTGTACA CACGC AAT GCGTG CTTTTTCATGTTTAA TERM 671 629362 - 629350 - T 74 -9.1 -3.17723 | opp_overlap 629350, overlap 629319 TCATGTTTAATTTAA CACGC AAT GCGTG TTTTGTCAATAATCT TERM 672 629350 - 629362 + T 89 -9.1 -4.44245 | opp_overlap 629319 629350 TCATGTTTAATTTAA CACGC AAT GCGTG TTTTGTCAATAATCT TERM 673 630038 - 630010 - T 100 -9.8 -5.71712 | opp_overlap 630009 GTGTATAGAAAAAAA GCAAAAACTCAT ATAAA ATAAGTTTTTGC ACTATTTACAGGCGG Cthe_0515 631575 - 630040 - | transposase IS66 TERM 674 630868 - 630879 + g 73 -2.2 -5.28176 | overlap 630855 630854 GGCATGCAGGTATTT TTCC TGCA GGAG TTTTTTATGCATCAA TERM 675 631452 - 631419 - G 74 -5.2 -4.72272 | opp_overlap 631421, overlap 631421 CTGCTTCATCAAAAA GAGACACCTGCCCC ACAGAA AGGGCTGATGTCTT CTCAGAACTTCTGCC TERM 676 631450 - 631421 - G 75 -7.8 -3.98256 | opp_overlap 631421, overlap 631419 GCTTCATCAAAAAGA GACACCTGCCCC ACAGAA AGGGCTGATGTC TTCTCAGAACTTCTG Cthe_0516 632029 - 631673 - | IS66 Orf2 like Cthe_0517 632387 - 632019 - | hypothetical protein TERM 677 632397 - 632407 + r 79 -6.8 -4.67904 | opp_overlap 632396 ATTCAACTCTAAATC CTCC TTT GGAG TTTTTCAAGTTAGTC TERM 678 632450 - 632439 - R 71 -3 -5.16472 | opp_overlap 632429 632439, overlap 632430 AAAAACTCTAAAAAA TCTA GATT TAGA GTATTGTCTCATAGT TERM 679 632587 - 632556 - R 100 -11.7 -4.64144 | opp_overlap 632556 632558, overlap 632558 AATAATGGTTAAAAA CACCCCTTAGCAA AATAGA CTGCTAAGGGGTA TTTATATGACTTTAA TERM 680 632556 - 632587 + r 82 -8.8 -4.11295 | opp_overlap 632556 632558, overlap 632558 AATAATGGTTAAAAA CACCCCTTAGCA AAATAGAC TGCTAAGGGGTA TTTATATGACTTTAA TERM 681 632585 - 632558 - R 100 -12.1 -3.92577 | opp_overlap 632556 632558, overlap 632556 TAATGGTTAAAAACA CCCCTTAGCAA AATAGA CTGCTAAGGGG TATTTATATGACTTT TERM 682 632558 - 632585 + r 93 -11.4 -3.64364 | opp_overlap 632558 632556, overlap 632556 TAATGGTTAAAAACA CCCCTTAGCA AAATAGAC TGCTAAGGGG TATTTATATGACTTT Cthe_0518 635675 - 632700 - | type III restriction enzyme, res subunit Cthe_0519 637524 - 635692 - | DNA methylase N-4/N-6 TERM 683 637255 - 637270 + g 83 -6.1 -5.10877 | TTCTATGTAAAGGTT CTGGG TTGTAT CCCAG TTTTTACTTTCTTCT Cthe_0520 638246 - 637521 - | hypothetical protein Cthe_0521 641527 - 638258 - | helicase-like protein Cthe_0522 641807 - 641532 - | hypothetical protein Cthe_0523 642188 - 642784 + | resolvase-like protein Cthe_0524 642821 - 643294 + | hypothetical protein Cthe_0525 643311 - 643793 + | hypothetical protein Cthe_0526 643797 - 644240 + | hypothetical protein TERM 684 644259 - 644249 - T 78 -6.8 -4.43012 | overlap 644250 AGGTTAATATGAAAA GCAG GAG CTGC GGATAAAATGCTCCT TERM 685 644319 - 644346 + T 78 -9.2 -3.44622 | overlap 644320 GGGGTTTTTAGCTTT CGGCCTATGATG TTTT TATCATAGGCCC TTAATTCTGAAACTG TERM 686 644320 - 644345 + T 95 -12.7 -2.66452 | overlap 644319 GGGTTTTTAGCTTTC GGCCTATGATG TTTT TATCATAGGCC CTTAATTCTGAAACT TERM 687 644414 - 644370 - T 100 -18.9 -3.30635 | gap 1, opp_overlap 644375, overlap 644375 GAAACTGCCGTAGAA CAAAAGACCTTACAGGTCGG ATAAAA CCG-CCTGTAAGGTCTTTCG CCATCATACCTGAAC TERM 688 644375 - 644409 + T 100 -15.2 -3.58343 | gap 1, opp_overlap 644370 644375 TGCCGTAGAACAAAA GACCTTACAGGTCGG ATAAAA CCG-CCTGTAAGGTC TTTCGCCATCATACC TERM 689 644409 - 644375 - T 100 -15.2 -4.77165 | gap 1, opp_overlap 644375, overlap 644370 TGCCGTAGAACAAAA GACCTTACAGGTCGG ATAAAA CCG-CCTGTAAGGTC TTTCGCCATCATACC Cthe_0527 644663 - 644418 - | hypothetical protein TERM 690 644734 - 644767 + H 74 -9.6 -2.64616 | gap 1 TTTTGATTGCTCTTT GGAGGGGGTGGGGAG TATCC CTCCGCATCCC-TCC TAATATCCCTCCAAA TERM 691 644771 - 644788 + H 74 -4.1 -5.27938 | opp_overlap 644773, overlap 644773 CCGCATCCCTCCTAA TATCCCT CCAA AGGGAAA TTTTTGTTTCAAAAT TERM 692 645010 - 645035 + H 100 -9.1 -5.97979 | opp_overlap 645005 645010 645009 CCAGATAAAAGAAAC CAAGGATTTCG ATAA TGGAATCCTTG TTTTTTTATTATTAT Cthe_0528 645143 - 645538 + | hypothetical protein Cthe_0530 645935 - 646549 + | hypothetical protein TERM 693 648937 - 648953 + G 82 -6.5 -4.84359 | ATGCACTTGTCAATG GGCGGAA GTA TTCAGCC TTTTTCTAAAACTCG Cthe_0531 646750 - 649038 + | hypothetical protein Cthe_0532 649110 - 649601 + | HAD superfamily hydrolase-like protein TERM 694 650520 - 650506 - g 70 -5.7 -4.41633 | TATGGCTAAAAACAA TGAGC TTGTG GCTCA GCCTTACCATATAGA Cthe_0533 649946 - 651478 + | radical SAM family protein TERM 695 651897 - 651919 + G 72 -8.4 -3.53012 | TGGACCGGTGGGCTT GTTTTGCTGG AGC CCGGCGAAGC TTTCCAAAAAGGGGA Cthe_0534 651489 - 653672 + | bacteriocin-processing peptidase Cthe_0535 653775 - 654047 + | hypothetical protein TERM 696 654053 - 654065 + F 72 -4.9 -4.77757 | ATTGAAATAAAGAGT CAAAA TGA TTTTG TTTTAGTTTTTGGCA TERM 697 654078 - 654097 + F 100 -7.9 -5.64274 | TTGTTTTAGTTTTTG GCATGGT CAAGTA ACCATGC TTTTTTTATGGCTGG TERM 698 654740 - 654762 + G 73 -8.6 -3.78775 | opp_overlap 654721, overlap 654732 654745 CCGGCTTTGGCTGGA TTAAACAGCT ATG AGTTGTTTAA TTTCATGCTGGAAAA Cthe_0536 654353 - 656044 + | glycoside hydrolase family protein TERM 699 656067 - 656099 + F 74 -9.1 -3.04398 | opp_overlap 656069 656070, overlap 656066 656070 AAAAACGGTGGAAAA AAGGGGACTTTGGCC GCT GGCTAAAGTCCCTGA ATTTTAAGGAGAGAA TERM 700 656097 - 656069 - f 100 -11.7 -5.03747 | opp_overlap 656067 656066 656070, overlap 656070 AAACGGTGGAAAAAA GGGGACTTTGGCC GCT GGCTAAAGTCCCT GAATTTTAAGGAGAG TERM 701 656096 - 656070 - f 100 -15.2 -3.61164 | opp_overlap 656067 656066 656070, overlap 656069 AACGGTGGAAAAAAG GGGACTTTGGCC GCT GGCTAAAGTCCC TGAATTTTAAGGAGA TERM 702 656070 - 656096 + F 100 -17.4 -2.74605 | opp_overlap 656070 656069, overlap 656067 656066 AACGGTGGAAAAAAG GGGACTTTGGCC GCT GGCTAAAGTCCC TGAATTTTAAGGAGA TERM 703 656261 - 656249 - g 82 -6.3 -4.97402 | opp_overlap 656248 656249 CAAAATGGATAAAAA CAAGT ATG ACTTG CTTCTTGTGGACATA TERM 704 656735 - 656719 - g 70 -2.9 -5.08824 | GTCTGAGGGAAAAAA TTGAGGA TGA CCCGCAA AATCCGACTTTTATT Cthe_0537 656118 - 656789 + | two component transcriptional regulator Cthe_0538 656782 - 657798 + | periplasmic sensor signal transduction histidine kinase TERM 705 658497 - 658477 - g 89 -5.5 -5.4505 | opp_overlap 658479 658482, overlap 658479 CTCTCCAATAAAAAA TACAATCAA ACC TTGATTGTT ATTACCCATGACGAA TERM 706 658495 - 658479 - g 80 -8.1 -4.36592 | opp_overlap 658479 658482, overlap 658477 CTCCAATAAAAAATA CAATCAA ACC TTGATTG TTATTACCCATGACG TERM 707 658479 - 658495 + G 70 -8.1 -3.63515 | opp_overlap 658479 658477, overlap 658482 CTCCAATAAAAAATA CAATCAA ACC TTGATTG TTATTACCCATGACG Cthe_0539 657907 - 658590 + | ABC transporter related protein TERM 708 658630 - 658618 - g 77 -4.9 -4.90136 | AATTAACACTAAAAA TTCTT GAA AAGAA CAAGGCAAGAACCCT Cthe_0540 658587 - 661193 + | hypothetical protein TERM 709 661235 - 661255 + F 100 -8.9 -5.63645 | opp_overlap 661228 661235 TTAAATACTTAAAAA GCCGGTCTG AAA TGGGCCGGC TTTTTTATGTTTTGA TERM 710 661255 - 661235 - f 74 -5.3 -4.77986 | opp_overlap 661235, overlap 661228 TTAAATACTTAAAAA GCCGGTC TGAAATG GGCCGGC TTTTTTATGTTTTGA TERM 711 661525 - 661542 + G 70 -5.5 -4.45544 | opp_overlap 661528, overlap 661526 ACTATTTTACCGGAA CCATGCC TGAG GGCATGC TTTTGATTCCTCGGG TERM 712 661526 - 661541 + G 70 -9 -3.26844 | opp_overlap 661528, overlap 661525 CTATTTTACCGGAAC CATGCC TGAG GGCATG CTTTTGATTCCTCGG Cthe_0541 661392 - 662585 + | peptidase M24 Cthe_0542 662618 - 663349 + | hypothetical protein Cthe_0543 663788 - 666007 + | glycoside hydrolase family protein TERM 713 666037 - 666066 + F 100 -11.5 -5.42605 | AATAACAATTATCAG GCTGCTGCGAAAG TTGC TTTTTGCGGCAGC TTTTATTTTTATTGC Cthe_0544 666202 - 667077 + | protein serine/threonine phosphatases Cthe_0545 667183 - 667611 + | prepilin peptidase CpaA Cthe_0546 667654 - 668073 + | ferric uptake regulator family protein TERM 714 668148 - 668124 - f 74 -7.3 -4.07968 | opp_overlap 668129, overlap 668116 668129 CAATATATAATCAAA TTAAATGCAAA TGA TTTGCATTTGA AATAAGTTGCTTGAA TERM 715 668129 - 668143 + F 70 -7.2 -3.6215 | opp_overlap 668124 668129 TATAATCAAATTAAA TGCAAA TGA TTTGCA TTTGAAATAAGTTGC TERM 716 668143 - 668129 - f 76 -7.2 -4.16205 | opp_overlap 668129, overlap 668124 TATAATCAAATTAAA TGCAAA TGA TTTGCA TTTGAAATAAGTTGC Cthe_0547 668249 - 669205 + | periplasmic solute binding protein TERM 717 669210 - 669193 - f 75 -4.9 -5.02074 | GGAGGCGTTAAAAAA GGCTTTT GAAT AAAAACC GGATTAGAGGTTGAT TERM 718 669591 - 669575 - g 91 -6.5 -5.4588 | opp_overlap 669575 669578 CAAAAGGATAAAAAA CAAGCAC AGG GAGCTTG TTTACAAAGCGCTCG Cthe_0548 669231 - 670010 + | ABC transporter related protein TERM 719 670055 - 670069 + G 72 -4.3 -4.76075 | TTTGAATCTGGGATT TATGC AAAGG GCATA TTTTATTGGTATGCT Cthe_0549 670011 - 670865 + | hypothetical protein Cthe_0550 671033 - 672937 + | heat shock protein 90 TERM 720 673082 - 673024 - T 76 -9.4 -3.1739 | gap 1, opp_overlap 673026 673037, overlap 673037 ATAGGATTTCAGTAA GAT-TTTATAAAAATGTCCTTCGGAAA ATAAAG CTTTCGAAGGACATTTTTATAAACATT TATTTTGCAAGTTGT TERM 721 673026 - 673080 + T 100 -13.5 -4.66535 | gap 1, opp_overlap 673024 673037, overlap 673037 AGGATTTCAGTAAGA T-TTTATAAAAATGTCCTTCGGAA AATAAAGC TTTCGAAGGACATTTTTATAAACA TTTATTTTGCAAGTT TERM 722 673037 - 673068 + T 100 -9.6 -4.86033 | opp_overlap 673024 673037, overlap 673026 AAGATTTTATAAAAA TGTCCTTCGGAA AATAAAGC TTTCGAAGGACA TTTTTATAAACATTT TERM 723 673068 - 673037 - T 90 -8.1 -4.87273 | opp_overlap 673037 673026, overlap 673024 AAGATTTTATAAAAA TGTCCTTCGGAAA ATAAAG CTTTCGAAGGACA TTTTTATAAACATTT Cthe_0551 674775 - 673111 - | AMP-dependent synthetase and ligase Cthe_0552 675342 - 674791 - | transcriptional regulator Cthe_0553 676394 - 675495 - | LysR family transcriptional regulator TERM 724 676252 - 676262 + g 72 -3.2 -5.06816 | TTTCGAAAAAAGAGC TTGG AAC CCAG TTTTTCTTCAAGACT TERM 725 678886 - 678874 - g 70 -7.7 -3.74693 | overlap 678879 678882 TGCCATTGGAGGAAA GGACA GCA TGTCC GGAACCTTTAAGGAC TERM 726 679653 - 679641 - g 74 -4.9 -4.70879 | overlap 679626 679645 679648 GGGAAATGGCAAAAA GAATT GAC AATTC CCAAATTGTGATGAT Cthe_0554 676514 - 680284 + | phosphoribosylformylglycinamidine synthase TERM 727 680891 - 680879 - g 87 -3.4 -5.70829 | overlap 680882 AATACTATAAAAAAA GAGT TGTTG ACTC AGTTGATTCAGCAAA Cthe_0555 680567 - 681808 + | PpiC-type peptidyl-prolyl cis-trans isomerase TERM 728 681816 - 681862 + T 100 -14 -4.11664 | opp_overlap 681826, overlap 681826 TGCTGTAATGCTGTA TGATTAAAAATCCTGGCGGC GGATTAG GCTGCCAGGATTTTTAGTTG TTTGCTTATTATACA TERM 729 681852 - 681826 - T 100 -9.4 -4.77036 | opp_overlap 681816 681826 CTGTATGATTAAAAA TCCTGGCGGC GGATTAG GCTGCCAGGA TTTTTAGTTGTTTGC TERM 730 681826 - 681852 + T 100 -11.6 -5.04356 | opp_overlap 681826, overlap 681816 CTGTATGATTAAAAA TCCTGGCGGC GGATTAG GCTGCCAGGA TTTTTAGTTGTTTGC Cthe_0556 683712 - 681871 - | asparagine synthase (glutamine-hydrolyzing) TERM 731 683582 - 683564 - G 71 -7.5 -3.86944 | opp_overlap 683563 TCGACAACTATCAAA CGCTTAT GGGCA ATAAGCG CATTTGGAGAAATCC TERM 732 684156 - 684146 - g 79 -3.2 -5.46657 | CATTTCAACAAAAAA GAGA AAT TCCC ATTTATTCTGTGGAT Cthe_0557 684019 - 684789 + | polysaccharide deacetylase Cthe_0558 684901 - 685551 + | hypothetical protein Cthe_0559 685904 - 686620 + | single-strand DNA-binding protein TERM 733 686685 - 686710 + T 95 -10.5 -4.47328 | opp_overlap 686685 GGTAACGTAAAAAAA GGTGATCTGAA GTTT TGCAGATCACC TTTTATGATGCCGTT TERM 734 686710 - 686685 - T 100 -10.5 -5.53288 | opp_overlap 686685 GGTAACGTAAAAAAA GGTGATCTGAA GTTT TGCAGATCACC TTTTATGATGCCGTT Cthe_0560 688515 - 686740 - | FAD-dependent pyridine nucleotide-disulphide oxidoreductase TERM 735 687168 - 687186 + g 74 -5.2 -4.67942 | opp_overlap 687167 687170, overlap 687172 TGCCGGCAAGCATAG GAGTGCTG AGC CAGCCTTC TTTTAATTTGTTGAG TERM 736 687289 - 687303 + g 73 -5.7 -4.64861 | overlap 687283 GTAGTGCTTTTCCAG CAGGA ATTTA TCCTG TTTCTTTTGGAAAAA Cthe_0561 688931 - 689977 + | ApbE-like lipoprotein Cthe_0562 689961 - 690341 + | hypothetical protein Cthe_0563 690422 - 690934 + | heptaprenyl diphosphate synthase component I Cthe_0564 690963 - 691919 + | trans-hexaprenyltranstransferase Cthe_0565 691999 - 692418 + | hypothetical protein TERM 737 692504 - 692531 + F 84 -5.6 -5.34381 | TTGAATTTGTATTAA GCCAGGGATATT AAAG GGTATCTTTGGC TTTTTATTTGGCTTT Cthe_0566 692718 - 695165 + | replication restart DNA helicase PriA def 695212 - 695724 + | peptide deformylase Cthe_0568 695783 - 696718 + | methionyl-tRNA formyltransferase Cthe_0569 696708 - 697463 + | hypothetical protein Cthe_0570 697480 - 698163 + | peptidase, membrane zinc metallopeptidase, putative TERM 738 698256 - 698234 - g 70 -5.7 -4.4773 | gap 1 CGATATCAATGAAAA GGGAGCATAT TCGA ATAT-CTCCC TGAATAAATATTTGA TERM 739 699123 - 699103 - g 87 -5.3 -5.38549 | opp_overlap 699103 TGGAAATAATAAAAA CTGAGGTGT TTG ACGCCGCAG TTCTGGACGGTAAAT Cthe_0571 698163 - 699530 + | sun protein Cthe_0572 699532 - 700581 + | radical SAM protein Cthe_0573 700646 - 701383 + | protein serine/threonine phosphatases TERM 740 702431 - 702421 - g 72 -3.2 -5.0095 | AAAAAGACAACAAAA CCAC TGT ATGG GCGGTGGTAACATCA TERM 741 702606 - 702582 - g 77 -8.7 -3.9373 | overlap 702596 GAGGTAAAAGGCAAA TTGTCTCAATA CAA TATTGAGGCAA TAGAGATAAGGAAGC TERM 742 703467 - 703448 - g 75 -7.8 -3.97139 | opp_overlap 703447 703445 703444 TAATTCCAACAATAA CGGTAGCG GTAG CGGTACCG ATAATATTAATGATA Cthe_0574 701454 - 703565 + | serine/threonine protein kinase TERM 743 703561 - 703544 - f 74 -6.3 -4.41348 | gap 1, opp_overlap 703544 703540, overlap 703545 703547 GTCCGGTGAAACAAA CCATGCAG AAG CTGCA-GG ATAGTTTTAAGGAGG TERM 744 704200 - 704246 + G 100 -12.4 -4.24002 | overlap 704243 CATGCGGAGCTTTTG GAACTAAAGTCAGGAGGGTTTG TTG TGGACACTCCCGGCTTTAGTTC TTTTGAACTTTCGGA Cthe_0575 703585 - 704469 + | ribosome small subunit-dependent GTPase A TERM 745 704548 - 704566 + F 84 -3.3 -5.72622 | AAGCTATTTTTTTGG TATATAT TTGGC ATATATA TTTTTTGTTTGTAAA Cthe_0576 704628 - 705290 + | ribulose-5-phosphate 3-epimerase Cthe_0577 705303 - 705941 + | thiamine pyrophosphokinase TERM 746 705974 - 705996 + T 100 -9.2 -5.3671 | opp_overlap 705974 TGAACTGTAAAAAAA GAGAAGAGCT TTG AACTCTTCTC TTTTTTGATTATCTT TERM 747 705996 - 705974 - T 100 -11.4 -5.47399 | opp_overlap 705974 TGAACTGTAAAAAAA GAGAAGAGCT TTG AACTCTTCTC TTTTTTGATTATCTT Cthe_0578 708290 - 706080 - | glycoside hydrolase family protein TERM 748 706685 - 706701 + g 72 -9.5 -3.09327 | TTATATCATTAGGAT TGTATCC GGC GGATACA TATTCCGTAAGGTCC TERM 749 706872 - 706889 + g 74 -4.9 -4.76644 | gap 1 AGCCATGAAGTTTGG TATGG-GG TTT CCGCCATA TTTTTCATACATCTT TERM 750 708134 - 708154 + g 73 -8.3 -3.67976 | AGTTGTTACGGATGT TGTCGGGAA GCT TTCCGGACA TTTGAAATTCATAGA TERM 751 709022 - 709006 - g 86 -4.5 -5.38958 | overlap 709007 ACTGACAAAGAAAAA CTTGAAA AGC TTTCAAA GATCAGAGAACACAG Cthe_0579 708844 - 709365 + | nitroreductase TERM 752 709426 - 709388 - T 90 -8.2 -4.77567 | opp_overlap 709394 709396, overlap 709394 AGCTTTATAAGAAAA GACAAAGACTTCCGGC TAATGCT GCCGGAAGCCTTTTTA AGTCTTTATTTTATA TERM 753 709394 - 709420 + T 100 -9.4 -4.7889 | opp_overlap 709394 709388, overlap 709396 ATAAGAAAAGACAAA GACTTCCGGC TAATGCT GCCGGAAGCC TTTTTAAGTCTTTAT TERM 754 709420 - 709394 - T 100 -11.6 -4.57514 | opp_overlap 709394 709396, overlap 709388 ATAAGAAAAGACAAA GACTTCCGGC TAATGCT GCCGGAAGCC TTTTTAAGTCTTTAT TERM 755 709396 - 709418 + T 80 -10.6 -2.6634 | opp_overlap 709394 709388, overlap 709394 AAGAAAAGACAAAGA CTTCCGGC TAATGCT GCCGGAAG CCTTTTTAAGTCTTT Cthe_0580 710625 - 709432 - | aspartate aminotransferase TERM 756 710005 - 710017 + g 87 -6.3 -5.26247 | AATTGCATATATACT GGAAT TAT ATTCC TTTTCTTTCTTTTCA Cthe_0581 712405 - 710639 - | fibronectin-binding A-like protein TERM 757 710939 - 710966 + g 79 -5.1 -5.02074 | gap 1 GGAAGATGCAAATTT CAATGT-CAAAA AATCA TTTTGCACATTG TTTTTTCCCACATAG TERM 758 711421 - 711438 + g 77 -4.9 -4.89477 | overlap 711423 CAACTTCTCTAAGTG TGTCCAT GTGG ATGGATA TTTTCTTATTGCAGC TERM 759 712498 - 712473 - R 79 -4.9 -5.29846 | AATTTGAAATAAAAA TTTCTTAAAAT AAAA ATTTAAAGAAA AAATTTAAAGTAAAA TERM 760 712512 - 712502 - R 75 -2.6 -5.67283 | AATTTAAAGAAAAAA TTTA AAG TAAA AATTTAAAACAAAAA Cthe_0582 714425 - 712662 - | PAS/PAC sensor signal transduction histidine kinase TERM 761 712843 - 712885 + g 80 -10.1 -3.68529 | opp_overlap 712854, overlap 712877 AAAGGCTCAAAGATT TTATTGATAATGGATTTGG AAATA CCAATTCCGTTGTCAGTAA TTTCAATAATGACAT Cthe_0583 715637 - 714453 - | response regulator receiver protein TERM 762 715534 - 715556 + g 70 -8.4 -3.35992 | ATCCTGAGTCCTTCT GTACTGCTGG AAG CCGTCAGTAC TTCATTGCCGTCAAT Cthe_0584 715767 - 716057 + | hypothetical protein TERM 763 716231 - 716269 + T 84 -5.5 -5.41746 | gap 1, opp_overlap 716237 716238, overlap 716234 716238 TTAGCTCCACCAGGA TTATAAGGCAGAATGGGT TATT ACCTGTTCTGC-TTATTA TTTTTTTCCGGAATT TERM 764 716234 - 716266 + T 86 -7.2 -4.79949 | gap 1, opp_overlap 716237 716238, overlap 716231 716238 GCTCCACCAGGATTA TAAGGCAGAATGGGT TATT ACCTGTTCTGC-TTA TTATTTTTTTCCGGA TERM 765 716238 - 716263 + T 95 -10.5 -4.48073 | opp_overlap 716238 716237, overlap 716234 716231 CACCAGGATTATAAG GCAGAATGGGT TATT ACCTGTTCTGC TTATTATTTTTTTCC TERM 766 716534 - 716565 + T 91 -12.4 -3.41229 | opp_overlap 716532 716538 716540, overlap 716540 ATGTACATAAGAATC TAAAGAGGGGAGGT AATT GCCTCCCCTTTTTG TTATAATAGGGATAT TERM 767 716561 - 716538 - T 77 -8.1 -3.88178 | opp_overlap 716534 716540, overlap 716532 716540 ACATAAGAATCTAAA GAGGGGAGG TAATTG CCTCCCCTT TTTGTTATAATAGGG TERM 768 716540 - 716559 + T 100 -11.4 -5.22006 | opp_overlap 716538 716532 716540, overlap 716534 ATAAGAATCTAAAGA GGGGAGGT AATT GCCTCCCC TTTTTGTTATAATAG TERM 769 716559 - 716540 - T 85 -10.7 -3.51556 | opp_overlap 716540 716534, overlap 716538 716532 ATAAGAATCTAAAGA GGGGAGG TAATTG CCTCCCC TTTTTGTTATAATAG TERM 770 716663 - 716687 + T 70 -6.5 -4.18197 | GTGTAAAAAACCCGG GAGATCGACAA AGT TTGTTGATGTC TTTTAAATGCAGGAT TERM 771 718639 - 718627 - T 71 -7.7 -3.47526 | overlap 718625 TGAGGAATTGAAACA TTGCC GGC GGCAA GTCTGAAGCGCCAAG TERM 772 718847 - 718862 + T 77 -7.6 -4.0942 | ACTTGTGAACTACCG CCACTT ATAG AAGTGG TTTGTATCGTACCTA TERM 773 719356 - 719389 + T 85 -8.3 -4.64048 | opp_overlap 719356 719358 ATGAGGAATTGAAAC TATTGTGCCAAGTGT CAAT ACTTTTGGTACAATA TTTGTTTGTATCGTA TERM 774 720468 - 720515 + T 70 -7.1 -3.60234 | gap 1 GTGCACTCTGTTGGA GGATGTCAAGGG-CGAGCGTAA GCGAG TTCATCTTGACCCTTGACATCC TTTGGACATATATCC TERM 775 720539 - 720562 + T 82 -11 -2.53876 | opp_overlap 720558 TATATCCTTTTGCTT TCCGGTCTGT TATG ACAGACCGGC TGCCTTCCGGTGAGG TERM 776 720586 - 720600 + T 86 -11.4 -2.89 | overlap 720584 GGTGAGGACGGGGTT TGGGGC GGA GCCCCA TAATTCTATACAACT Cthe_0585 721442 - 720606 - | integrase catalytic subunit Cthe_0586 721758 - 721465 - | transposase IS3/IS911 Cthe_0587 723139 - 721919 - | transposase, mutator type TERM 777 722401 - 722376 - G 74 -6.1 -4.37092 | overlap 722377 ACGTTTCTCATAAAA TGTACACGGCA TCTT TGCCATGCACT TCCCGTTAAAATCTT TERM 778 722400 - 722377 - G 73 -9.6 -3.21934 | overlap 722376 CGTTTCTCATAAAAT GTACACGGCA TCTT TGCCATGCAC TTCCCGTTAAAATCT TERM 779 724409 - 724399 - g 74 -4.6 -4.90013 | opp_overlap 724399 TAACTGAACGAAAAA CCCG CTA CGAG TTATTGTTTCTTTTG Cthe_0588 723750 - 724820 + | integrase catalytic subunit Cthe_0590 726133 - 726426 + | transposase IS3/IS911 Cthe_0591 726449 - 727285 + | integrase catalytic subunit TERM 780 727305 - 727291 - f 86 -11.4 -2.89 | overlap 727288 AGTTGTATAGAATTA TGGGGC TCC GCCCCA AACCCCGTCCTCACC TERM 781 727352 - 727329 - f 82 -11 -2.53876 | opp_overlap 727319 CCTCACCGGAAGGCA GCCGGTCTGT CATA ACAGACCGGA AAGCAAAAGGATATA TERM 782 727423 - 727376 - f 70 -7.1 -3.60234 | gap 1 GGATATATGTCCAAA GGATGTCAAGGGTCAAGATGAA CTCGC TTACGCTCG-CCCTTGACATCC TCCAACAGAGTGCAC TERM 783 727633 - 727597 - f 72 -8.8 -3.00476 | opp_overlap 727595 727597 ATGGTGAATGACAGA GGAGGACTATTGCC CGGGTAATT AGCAATTGTCCTCC TAATTTTTTAATTGG TERM 784 727597 - 727633 + F 73 -8.1 -3.44982 | opp_overlap 727597, overlap 727595 ATGGTGAATGACAGA GGAGGACTATTGC CCGGGTAATTA GCAATTGTCCTCC TAATTTTTTAATTGG Cthe_0592 727660 - 728325 + | methyltransferase type 11 TERM 785 729272 - 729256 - g 79 -5.3 -5.02476 | opp_overlap 729259 ATATCGGGCAAAAAA TTATATT GAA AATATAA TTGGAAATGTTGATT Cthe_0593 728648 - 729646 + | copper amine oxidase-like protein TERM 786 729665 - 729719 + F 82 -7.5 -4.45083 | gap 2, opp_overlap 729667 729671, overlap 729667 GGACGAGCCTAAAAT TATAAAGTCTGAAGGC--AATGACGAA AAA TTGGTCTTTCTGCCTTCAGACTTTAAA TTTTCTAACTGTCAA TERM 787 729667 - 729717 + F 77 -10.1 -2.55459 | gap 2, opp_overlap 729667 729671, overlap 729665 ACGAGCCTAAAATTA TAAAGTCTGAAGGC--AATGACGAA AAA TTGGTCTTTCTGCCTTCAGACTTTA AATTTTCTAACTGTC TERM 788 729717 - 729667 - f 81 -10.1 -3.10098 | gap 2, opp_overlap 729667 729665, overlap 729671 ACGAGCCTAAAATTA TAAAGTCTGAAGGC--AATGACGAA AAA TTGGTCTTTCTGCCTTCAGACTTTA AATTTTCTAACTGTC TERM 789 729713 - 729671 - f 70 -6.5 -4.208 | gap 2, opp_overlap 729667 729665, overlap 729667 GCCTAAAATTATAAA GTCTGAAGGC--AATGACGAA AAA TTGGTCTTTCTGCCTTCAGAC TTTAAATTTTCTAAC TERM 790 731294 - 731319 + G 74 -6.1 -4.37092 | overlap 731295 AAGATTTTAACGGGA AGTGCATGGCA AAGA TGCCGTGTACA TTTTATGAGAAACGT TERM 791 731295 - 731318 + G 73 -9.6 -3.21934 | overlap 731294 AGATTTTAACGGGAA GTGCATGGCA AAGA TGCCGTGTAC ATTTTATGAGAAACG Cthe_0594 730556 - 731776 + | transposase, mutator type TERM 792 732013 - 731988 - g 72 -3.3 -5.00884 | AGGTTTTTCAAAAAA TTCCGGATTGC CCAT ACAATCTGAAA TACCTGCGTTGCTGA Cthe_0595 731947 - 733014 + | hypothetical protein Cthe_0596 733087 - 733710 + | GTP-binding protein TERM 793 733891 - 733912 + F 100 -13.1 -5.35354 | TTTTTAGCTTATTGA CGCTTATCC TTCG GGATAAGCG TTTTTTAGTTCTATG Cthe_0597 733975 - 734175 + | thiamine biosynthesis protein ThiS TERM 794 734860 - 734884 + G 70 -7.9 -3.65902 | CAAATGCGGTGATAG CCGGAAGGA AGGCATA TCTTTCCGG TTTGGGTCCGGTAAA thiG 734178 - 734945 + | thiazole synthase Cthe_0599 735074 - 736183 + | thiazole biosynthesis protein ThiH Cthe_0600 736260 - 736904 + | thiamine biosynthesis protein ThiF TERM 795 737521 - 737505 - g 80 -2.3 -5.54192 | ACGAATGCAAAAAAA TAAGG GAAATGA CCTTA GATTCGGGCGTTACA TERM 796 737869 - 737881 + G 73 -10.5 -2.89039 | GGATGAGGTTTTGGC CCGGG GAG CCCGG TGTATAGCCATGGTT Cthe_0601 736904 - 737974 + | thiamine-phosphate pyrophosphorylase TERM 797 738141 - 738129 - g 91 -6.3 -5.47914 | AAAAACCACAAAAAA CTTGA GCC TCAAG GAATAGGAGAAGGTT TERM 798 739040 - 739025 - g 72 -10.4 -2.6294 | overlap 739014 739024 TATAGCAGCCAGAAT TGCGGC CCAT GCCGCA GATATAGCGAAAGGA TERM 799 739166 - 739152 - g 75 -5.6 -4.73448 | ATAGACAGGGAAAAA GCGGAA AGA TACCGC AAAAGCTCGATGCCT Cthe_0602 737976 - 739274 + | thiamine biosynthesis protein ThiC TERM 800 739318 - 739336 + F 95 -10.3 -4.258 | opp_overlap 739310 GAAAAATCAAGGGGG CAAGGGG GATAA CCCCTTG TTTATTAATACCTGG TERM 801 739452 - 739430 - f 84 -5.5 -5.36441 | GTTTGATACAAAAAA CTGCAGCTT AAAGA ATGCCGCAG GTAATGTATATTAAT Cthe_0603 739755 - 740279 + | GCN5-related N-acetyltransferase Cthe_0604 740304 - 740561 + | hypothetical protein Cthe_0605 740565 - 741677 + | PgdS peptidase. cysteine peptidase. MEROPS family C40 TERM 802 741741 - 741723 - f 89 -8.9 -4.48741 | opp_overlap 741723, overlap 741715 GAATTTACGAGAAAA GCTCCTT ACTCG AAGGAGC TTTTTAAAGTGCAGA TERM 803 741723 - 741741 + F 90 -8.9 -4.62069 | opp_overlap 741715 741723 GAATTTACGAGAAAA GCTCCTT ACTCG AAGGAGC TTTTTAAAGTGCAGA TERM 804 742528 - 742538 + G 73 -5.4 -4.51097 | ATGGCGGTCTCAGGA GCAA ACG TTGC TTTTATCATGCTTCC TERM 805 743532 - 743521 - g 73 -7.2 -4.00038 | opp_overlap 743520 GACGACCATTATAAA GGGC TTTT GCCC GTACTTGAAAACTTC TERM 806 743641 - 743630 - g 81 -3 -5.61881 | CCCGAAAAAGAAAAA TTTC GGTG GAAA AGTGTGAAAAGGACG Cthe_0606 741757 - 744093 + | DNA internalization-related competence protein ComEC/Rec2 TERM 807 745002 - 745018 + G 73 -8 -3.84825 | opp_overlap 744995 745009 GCCAGATACCCGGCA CACCGA AGGAA TCGGTG TTTCCTGTAGGTAAA Cthe_0607 744284 - 745333 + | peptidase M42 Cthe_0608 745327 - 746376 + | peptidase M42 TERM 808 747219 - 747207 - g 80 -6.3 -4.76644 | opp_overlap 747207 AAGAGTCAGCAAAAA GGAAT AAT ATTCC TTATCAGTTGGAAAT Cthe_0609 746423 - 747400 + | peptidase M42 TERM 809 747448 - 747472 + F 100 -11.4 -5.1675 | opp_overlap 747448 747436 AGAGATTTATAAAAG GCTTCCTGCC TTTAT GGCGGGAGGC TTTTTTAGTAAATCA Cthe_0610 747663 - 748730 + | histidinol-phosphate aminotransferase Cthe_0611 748841 - 750466 + | RNA-metabolising metallo-beta-lactamase TERM 810 750526 - 750502 - f 74 -3 -5.47218 | opp_overlap 750502 TGTTATGTAAAAAAA TAAAGAAG TTTAAAATT CTTCTTTA TTTTTTTTGCCCTTT TERM 811 750502 - 750526 + F 81 -3 -5.82388 | opp_overlap 750502 TGTTATGTAAAAAAA TAAAGAAG TTTAAAATT CTTCTTTA TTTTTTTTGCCCTTT Cthe_0612 750623 - 752134 + | SSS family solute/sodium (Na+) symporter TERM 812 752204 - 752239 + F 100 -9.8 -4.82901 | opp_overlap 752209, overlap 752209 TTAATTTGTATATTG AAAAAGCAGCCGAAGA TTAC TTTTCGGCTGCTTTGC TTTTTATGGCGGGGC TERM 813 752234 - 752209 - f 100 -11.9 -4.70659 | opp_overlap 752204 752209 TTGTATATTGAAAAA GCAGCCGAAGA TTAC TTTTCGGCTGC TTTGCTTTTTATGGC TERM 814 752209 - 752234 + F 100 -14.1 -4.38116 | opp_overlap 752209, overlap 752204 TTGTATATTGAAAAA GCAGCCGAAGA TTAC TTTTCGGCTGC TTTGCTTTTTATGGC TERM 815 752301 - 752314 + F 91 -8.1 -5.00884 | CACTTTTGGACTGCA GGCTG TTTA CAGCC TTTTTTGAAAGCAAT Cthe_0613 752381 - 754186 + | thiamine pyrophosphate enzyme-like TPP-binding Cthe_0614 754189 - 754764 + | indolepyruvate oxidoreductase subunit B TERM 816 755020 - 755008 - g 74 -6.2 -4.31549 | GAAAATGCAAAAGAA GGGC ATTGA GCCC GGAGACATTAAAACG Cthe_0615 754874 - 756175 + | phenylacetate-CoA ligase Cthe_0616 756230 - 756661 + | ACT domain-containing protein TERM 817 757780 - 757767 - g 72 -4.5 -4.70511 | overlap 757775 757776 TGAAAAACAAAAGAA CAGGA GAAG TCCCG ATGCACCTTAGAAAT Cthe_0617 756695 - 757993 + | recombination factor protein RarA TERM 818 758182 - 758213 + T 90 -8 -4.91573 | gap 1, overlap 758205 AAATTTGAGATTGAG GGCATCCTG-AGCAG CCG CAGCTGCAGGATCCC TTTTTCCTGTCTTTT Cthe_0618 760479 - 758314 - | ferrous iron transport protein B TERM 819 758351 - 758365 + g 70 -3.6 -4.90217 | overlap 758357 AATGCTCTTGATATT TTTTTC GTA GAAGAA TTTTTACTGTCTTTA TERM 820 759177 - 759162 - G 71 -6.8 -3.97674 | CTATGAGTGAAATAA TCGGCA GCTT CGCCGA GCAGGGAATAAATGT TERM 821 759473 - 759491 + g 70 -9.6 -2.5806 | opp_overlap 759466 759464 759471, overlap 759472 759475 ATTAAAGATGACAGC CAGTCAGC ACA GTTGACTG ATTCTAAGAAGCTTT Cthe_0619 760774 - 760553 - | hypothetical protein Cthe_0620 761095 - 761487 + | DtxR family iron dependent repressor TERM 822 761543 - 761507 - T 75 -2.4 -5.52807 | opp_overlap 761511, overlap 761509 761511 AATAATAAAGAAAAA CAGAGCCTCAAATT TTGACATTG AATTTGAGGCTTTT AAATTTTTGCGGAAG TERM 823 761511 - 761539 + T 85 -8.3 -4.4874 | opp_overlap 761509 761507 761511 ATAAAGAAAAACAGA GCCTCAAATTT TGACATT GAATTTGAGGC TTTTAAATTTTTGCG TERM 824 761539 - 761511 - T 73 -7.6 -3.73347 | opp_overlap 761511, overlap 761509 761507 ATAAAGAAAAACAGA GCCTCAAATT TTGACATTG AATTTGAGGC TTTTAAATTTTTGCG Cthe_0621 762592 - 761564 - | translation initiation factor 2B subunit I Cthe_0622 763443 - 762637 - | methylthioadenosine phosphorylase TERM 825 763794 - 763780 - g 76 -7.2 -4.22858 | AGAATATAGAAAGAA CCATAA ATC TTATGG AGGAACATGGGATAT Cthe_0623 763713 - 764351 + | TraR/DksA family transcriptional regulator TERM 826 764420 - 764433 + F 75 -2.5 -5.65177 | GAATGCTTATTTGGG TATTT GTAT AAATA TTTTTTTATAAATAT TERM 827 769321 - 769301 - g 80 -6.2 -4.66057 | ACATACAAAGTAAAA CTGATTGT TACAG ACAACCAG GGGGCTTCAAGTTCG Cthe_0624 765032 - 769837 + | glycoside hydrolase family protein TERM 828 769898 - 769920 + F 100 -9.9 -5.46698 | opp_overlap 769898 AGGCCGGGCAAAAAA GGAGGAACC TTTGC GGTTTCTCC TTTTTTGCTTTTAAA TERM 829 769920 - 769898 - f 89 -7.7 -5.00884 | opp_overlap 769898 AGGCCGGGCAAAAAA GGAGGAACC TTTGC GGTTTCTCC TTTTTTGCTTTTAAA Cthe_0625 770401 - 772533 + | glycoside hydrolase family protein TERM 830 772562 - 772588 + F 100 -12.3 -5.3167 | ATACTCTTTGAGTAC GGGCTGTCCTG AAAAA CAGGACGGCTC TTTTGTTTATTTTTA Cthe_0626 772747 - 774159 + | hypothetical protein Cthe_0627 774347 - 775222 + | hypothetical protein Cthe_0628 775192 - 776028 + | hypothetical protein Cthe_0629 776050 - 777495 + | type II secretion system protein E Cthe_0630 777485 - 778462 + | hypothetical protein Cthe_0631 778456 - 779340 + | hypothetical protein TERM 831 779885 - 779873 - g 79 -3.4 -5.4756 | opp_overlap 779881, overlap 779860 AACCTGAACAAAAAA CCTT TTTTC AAGG AAAACCCTGTTACTT Cthe_0632 779675 - 780277 + | hypothetical protein TERM 832 780347 - 780374 + G 82 -8.6 -4.18018 | overlap 780343 GTTGCGTCAATGTTG TTTCAACCCTTT TTCG AAATGGTTGAAA TTTTCGCTGAAAAGG Cthe_0633 780296 - 780781 + | hypothetical protein Cthe_0634 782899 - 780812 - | serine/threonine protein kinase TERM 833 782189 - 782177 - G 73 -7.7 -3.93136 | opp_overlap 782177 ATAGGGAGGCATAAA CGGAA ATC TTCCG TGGTTTAAAAGTTTA Cthe_0635 783852 - 783022 - | protein serine/threonine phosphatases TERM 834 783753 - 783723 - G 87 -8.4 -4.50988 | overlap 783720 TTATATCAAAAAGAA TTGTTTTTTCCGTC ATG GACGGAGAAAAAAA TATGCCGTTAAGATA Cthe_0636 784236 - 783988 - | hypothetical protein TERM 835 784283 - 784263 - R 100 -9.1 -5.44119 | opp_overlap 784263 784262 784254 CTCACTTTAAAAAAA GCTATGCAA TTT TTACATAGC CTTTTTATAATTTAA TERM 836 784322 - 784356 + r 89 -8.7 -4.61868 | gap 1, opp_overlap 784328 784329 784331 784332, overlap 784328 784332 CAAAATAAACGGAGG CAAAAACGATGGGGCT CAAA AGCCCC-TTGTTTTCG TTTTATGTATAAATG TERM 837 784328 - 784350 + r 80 -6.3 -4.75518 | gap 1, opp_overlap 784328 784329 784331 784332, overlap 784322 784332 AAACGGAGGCAAAAA CGATGGGGCT CAAA AGCCCC-TTG TTTTCGTTTTATGTA TERM 838 784347 - 784332 - R 79 -10.4 -2.55361 | opp_overlap 784328 784322 784332, overlap 784331 784328 784329 GGAGGCAAAAACGAT GGGGCT CAAA AGCCCC TTGTTTTCGTTTTAT TERM 839 784332 - 784347 + r 95 -10.4 -4.44748 | opp_overlap 784332 784331 784328 784329, overlap 784328 784322 GGAGGCAAAAACGAT GGGGCT CAAA AGCCCC TTGTTTTCGTTTTAT Cthe_0637 784690 - 784388 - | hypothetical protein Cthe_0638 789506 - 784827 - | FHA domain-containing protein TERM 840 786647 - 786662 + g 76 -4.6 -5.05116 | AAACGGCAGCCTGAA GCTGGG TAAA CTCGGC TTTTCTTATTTGTGA TERM 841 786824 - 786851 + g 75 -7.7 -4.00532 | overlap 786827 AAATTTCATCGTTTC CAACCTGGATG TAGGCT CTTCCGGGTTG TTTGATATTTGCGGC TERM 842 788060 - 788099 + g 71 -6.4 -4.18018 | TTTCATTCCATACAT GGGGCAGCCAGCGAAT CCATTCCC ATTCGTCGGCTTCCTC TTTTGGATAAACCAG TERM 843 788966 - 788988 + g 74 -4.8 -4.70879 | opp_overlap 788987 ATATTACGTCACCTT GGCTTAAGAC GCT GTCATAAACC TTTTTACCGTTTAGA TERM 844 789321 - 789344 + g 70 -3.2 -5.00616 | gap 1, overlap 789324 CGATTTACTGTGATT GTAGATATACC ACT GGT-TATCTTC TTTTTTAAGGGAGCA Cthe_0639 790914 - 789712 - | glycoside hydrolase family protein TERM 845 789794 - 789807 + g 79 -6.7 -4.63542 | GATTTGCCGCCGGAG GACTC AATT GAGTC TTTTTCGGAATTCTG TERM 846 789981 - 789995 + g 71 -7.1 -3.87149 | opp_overlap 789981 789980 ACAAATTCATAATAT TGCCG TCGGC CGGCA TTTCAGTTTCATCCG Cthe_0640 791133 - 792881 + | cellulosome enzyme, dockerin type I TERM 847 793006 - 793047 + T 100 -16.3 -4.24963 | opp_overlap 793013, overlap 793045 TTACCTTTTCCACGG TAAGGAATATGTCTGAATT TATA AATTCGGATATATTCCTTA TTTTGAATAATTATA TERM 848 793362 - 793397 + T 83 -10.6 -3.13382 | opp_overlap 793368, overlap 793368 TGGCAAATATTTATG CAAAAACGGCTTCA AGATTAAA TGAAGCCGTTTTCG TGTTGGAGTTTGATA TERM 849 793391 - 793368 - T 85 -8.2 -4.67755 | opp_overlap 793362 793368 ATATTTATGCAAAAA CGGCTTCA AGATTAAA TGAAGCCG TTTTCGTGTTGGAGT TERM 850 793368 - 793391 + T 85 -8.2 -4.43012 | opp_overlap 793368, overlap 793362 ATATTTATGCAAAAA CGGCTTCA AGATTAAA TGAAGCCG TTTTCGTGTTGGAGT Cthe_0641 793682 - 793440 - | coat F domain-containing protein Cthe_0642 793884 - 793699 - | hypothetical protein Cthe_0643 794108 - 795181 + | hypothetical protein Cthe_0644 795276 - 795920 + | vitamin B12 dependent methionine synthase, activation region Cthe_0645 795913 - 798327 + | methionine synthase (B12-dependent) TERM 851 800008 - 799972 - g 93 -11.2 -4.33767 | gap 1, opp_overlap 799976 799983 ATAAATTTATGAAAA TAACTTGCAA-ATACGG CATA CCGTATTTTGCAAATTA TATAAACTCGGATTT TERM 852 799976 - 800004 + G 70 -9.8 -2.70022 | gap 1, opp_overlap 799972, overlap 799983 ATTTATGAAAATAAC TTGCAA-ATACGG CATA CCGTATTTTGCAA ATTATATAAACTCGG TERM 853 799983 - 799996 + G 73 -6.7 -4.16251 | opp_overlap 799972, overlap 799976 AAAATAACTTGCAAA TACGG CATA CCGTA TTTTGCAAATTATAT Cthe_0646 798912 - 801002 + | anaerobic ribonucleoside triphosphate reductase Cthe_0647 800999 - 801688 + | anaerobic ribonucleoside-triphosphate reductase activating protein TERM 854 801745 - 801713 - T 93 -11.5 -3.59315 | opp_overlap 801713 801718 801743, overlap 801718 TCAATTACTGTTAAA CAAAAGCGATGGA TGAAATC TCCATCGCTTTTA TAATATATAATCTTG TERM 855 801713 - 801745 + T 72 -9.3 -2.72954 | opp_overlap 801713 801718, overlap 801718 801743 TCAATTACTGTTAAA CAAAAGCGATGGA TGAAATC TCCATCGCTTTTA TAATATATAATCTTG TERM 856 801740 - 801718 - T 93 -9.2 -4.87803 | opp_overlap 801713 801718, overlap 801713 TACTGTTAAACAAAA GCGATGGA TGAAATC TCCATCGC TTTTATAATATATAA TERM 857 801718 - 801740 + T 89 -9.2 -4.53163 | opp_overlap 801718 801713, overlap 801713 TACTGTTAAACAAAA GCGATGGA TGAAATC TCCATCGC TTTTATAATATATAA Cthe_0648 803506 - 801866 - | glutamyl-tRNA synthetase TERM 858 801984 - 802013 + g 80 -4.3 -5.22006 | gap 1, opp_overlap 801987, overlap 801987 801987 ATAACAGTGCTTACA TCACCCACATGTCC TTT GTACATGTCGG-GA TTTTTCTTGTAGTCC TERM 859 802555 - 802589 + g 72 -9.5 -3.05963 | gap 2, overlap 802559 802564 TCATAAGATACTCTC TTAC-TGCAGC-GGGGT GAT ACCCCAGTTGCATGTAA TATTCCAATCCCAAT TERM 860 802559 - 802584 + g 73 -10.5 -2.92026 | gap 1, overlap 802555 802564 AAGATACTCTCTTAC TGCAGC-GGGGT GAT ACCCCAGTTGCA TGTAATATTCCAATC TERM 861 803032 - 803044 + g 79 -4.8 -5.02606 | CTGTATTAACGTTTT CAGC CAGTT GCTG TTTTCTTATTTCCTC TERM 862 803588 - 803557 - H 80 -7.5 -4.22524 | gap 1, opp_overlap 803557 803559 ATAGTCAAAATTAAA GACGGCT-TTTGTT GTTAA AACAAAGAACCGTC GTATTATTCCTTTGG Cthe_0649 804017 - 804346 + | hypothetical protein Cthe_0650 804468 - 804767 + | hypothetical protein TERM 863 805057 - 805073 + F 72 -5.1 -4.75309 | AGGTTATATAATCCT GCTACTG TAA TAGTGGC TTTTCTTGCATTTCC Cthe_0651 805069 - 805407 + | hypothetical protein Cthe_0652 805490 - 805726 + | 4-oxalocrotonate tautomerase Cthe_0653 805854 - 806117 + | CopG family transcriptional regulator TERM 864 806330 - 806301 - f 74 -7.9 -3.85817 | opp_overlap 806301 AGTTTTGTCTATAAA CTCTTCCTGACTT ATGT AGGTCACGAAGAG TTTTTGTTTTTCTGA TERM 865 806301 - 806330 + F 100 -10.1 -5.69262 | opp_overlap 806301 AGTTTTGTCTATAAA CTCTTCCTGACTT ATGT AGGTCACGAAGAG TTTTTGTTTTTCTGA TERM 866 807219 - 807196 - g 83 -6.1 -5.07486 | opp_overlap 807196 807198 CACTTTGAAGAAAAA TATGGTGTA GGGCCG CACACCATA TCTGTTCCGAGACTT thiH 806431 - 807807 + | thiamine biosynthesis protein ThiH TERM 867 808428 - 808405 - g 79 -3.2 -5.4111 | AAGAAGTATAAAAAA GAACACAAAA ATGA TTATATGTTC CCTTTCCTCCAACGT Cthe_0655 807995 - 809140 + | cysteine desulfurase family protein TERM 868 809714 - 809688 - g 71 -3.8 -4.92239 | CTAAAAATGCAAAAA TTATAATGTCCG GAA CAAACATAATAA CAAGAATTTACTTAA TERM 869 810510 - 810499 - g 70 -3 -5.08601 | TGAGCTTAAGAAAAA TCTT GACA AAGA TAAACTCAATTACCT Cthe_0656 809447 - 810553 + | type IV pilus assembly protein PilM TERM 870 810538 - 810548 + T 71 -6.8 -4.04997 | CCTGATAAATGCTGT GGGA ATA TCCC TTTAATTCCTTTAAT TERM 871 810648 - 810669 + T 95 -5.9 -5.74684 | opp_overlap 810632 810648, overlap 810632 GAAGTTTACAGCAAA CTCCAGT TTTTGTTC ACTGGAG TTTTTATTTTTATTA Cthe_0657 811668 - 811069 - | hypothetical protein Cthe_0658 812136 - 812432 + | hypothetical protein Cthe_0659 812837 - 812448 - | hypothetical protein TERM 872 815294 - 815275 - g 76 -4.4 -5.10461 | gap 1, opp_overlap 815275 GGTATTTAATAAAAA CAACATCAG AAC CT-ATGTTG TTTACAATGCTTCAT Cthe_0660 813278 - 815599 + | glycoside hydrolase family protein TERM 873 815751 - 815766 + F 71 -5.4 -4.70659 | opp_overlap 815751 TGTTATACCAATAAA CGGCAT GGGA ATGCTG TTTTTAAGTATAGCG Cthe_0661 815804 - 817519 + | Ricin B lectin TERM 874 817763 - 817734 - g 100 -5 -5.9667 | opp_overlap 817738, overlap 817738 AAAAATATAAAAAAA TAAATCCTCAGG TCCAAT CCTGGGGATTTT TCATATTAGCAAGAT TERM 875 817759 - 817738 - g 85 -5.8 -5.29742 | opp_overlap 817738, overlap 817734 ATATAAAAAAATAAA TCCTCAGG TCCAAT CCTGGGGA TTTTTCATATTAGCA TERM 876 817738 - 817759 + G 86 -8 -4.87626 | opp_overlap 817738 817734 ATATAAAAAAATAAA TCCTCAGG TCCAAT CCTGGGGA TTTTTCATATTAGCA Cthe_0662 817526 - 817825 + | hypothetical protein Cthe_0663 818404 - 817835 - | hypothetical protein TERM 877 818146 - 818135 - G 70 -5.8 -4.41348 | TTCGGGGGAAAGAAA CCTG TTTT CAGG AACTTCTCTTGTACC TERM 878 818565 - 818596 + H 78 -5.9 -4.77036 | opp_overlap 818565 TAAGGAATATAAAAA CAGCGCCTTAC TGCAATCTAT GTAAGACGCTG TTTTTAGTGGTCGGA TERM 879 818596 - 818565 - H 93 -8.1 -5.1485 | opp_overlap 818565 TAAGGAATATAAAAA CAGCGCCTTAC TGCAATCTAT GTAAGACGCTG TTTTTAGTGGTCGGA Cthe_0664 818815 - 819627 + | hypothetical protein TERM 880 819642 - 819661 + F 100 -7.9 -5.68039 | opp_overlap 819642 AAAAAGCTCCAAAAA GAAGTGC GTATTG GCACTTC TTTTTTTATGACTTT TERM 881 819661 - 819642 - f 82 -7.9 -4.67168 | opp_overlap 819642 AAAAAGCTCCAAAAA GAAGTGC GTATTG GCACTTC TTTTTTTATGACTTT Cthe_0665 819807 - 820775 + | HflK protein Cthe_0666 820777 - 821646 + | HflC protein TERM 882 822002 - 821973 - g 95 -8.8 -5.41746 | AACTTCGGAAAAAAA GAAAAAAGGTTC GTTAAG AAACCTTTTTTC AAAATCAGCCAATAG TERM 883 822626 - 822614 - g 71 -4.1 -4.96106 | opp_overlap 822608, overlap 822608 TAGAAATAGGAAAAA GAAGT AAA ACTCC TTGTTCACTTTTGTA Cthe_0667 821833 - 823602 + | GerA spore germination protein TERM 884 824081 - 824101 + G 79 -10.5 -3.45737 | overlap 824082 GTACGACAATTGTTC TTCCGATTG TGG CAATCGGAG TTGTAATAGTCGTTG TERM 885 824082 - 824100 + G 81 -11.8 -2.6696 | overlap 824081 TACGACAATTGTTCT TCCGATTG TGG CAATCGGA GTTGTAATAGTCGTT Cthe_0668 823636 - 824745 + | spore germination protein Cthe_0669 824735 - 826045 + | spore germination B3 GerAC like TERM 886 826916 - 826948 + G 70 -8.5 -3.43773 | opp_overlap 826915, overlap 826913 CAATTTGCGCAATAG TGCTCACAAGCATTA CAT TCACGTTTGTGAGCA TATTTCCGTATCCGG TERM 887 827062 - 827072 + G 75 -5.4 -4.74013 | TTGGTCATTACCTGG GCAA CCA TTGC TTTTATGTATTTGAG Cthe_0670 826240 - 827337 + | spore germination protein TERM 888 827366 - 827313 - T 100 -12 -3.90744 | opp_overlap 827321 827357, overlap 827321 CCGGGCTTTAAACAA TAAAAAAAGCAGCAACTCTCCTTA AATCAG CAAGGAGCGTTGTTGCTTATTTTA AAAAACCATTTGAAG TERM 889 827321 - 827358 + T 95 -10.7 -4.17048 | opp_overlap 827313 827321, overlap 827357 TAAACAATAAAAAAA GCAGCAACTCTCCTT AAATCAGC AAGGAGCGTTGTTGC TTATTTTAAAAAACC TERM 890 827358 - 827321 - T 100 -9.2 -6.01369 | opp_overlap 827321 827357, overlap 827313 TAAACAATAAAAAAA GCAGCAACTCTCCTTA AATCAG CAAGGAGCGTTGTTGC TTATTTTAAAAAACC Cthe_0671 827818 - 827339 - | hypothetical protein TERM 891 828152 - 828128 - H 90 -11.6 -3.53091 | opp_overlap 828128 828131 828133, overlap 828131 ATTTGCCCCCTTAAA TAAGGTGCAT TAAAT ATGCACCTTA TTTATATGCATATTT TERM 892 828128 - 828152 + H 100 -11.6 -4.09542 | opp_overlap 828128 828131, overlap 828131 828133 ATTTGCCCCCTTAAA TAAGGTGCAT TAAAT ATGCACCTTA TTTATATGCATATTT TERM 893 828131 - 828149 + H 88 -8.9 -4.15698 | opp_overlap 828128 828131, overlap 828128 828133 TGCCCCCTTAAATAA GGTGCAT TAAAT ATGCACC TTATTTATATGCATA TERM 894 828149 - 828131 - H 81 -8.9 -3.90744 | opp_overlap 828131 828128 828133, overlap 828128 TGCCCCCTTAAATAA GGTGCAT TAAAT ATGCACC TTATTTATATGCATA TERM 895 828264 - 828285 + H 100 -11.7 -3.85698 | opp_overlap 828264 GAAGCATTAAAAAAA CCTGTTTCA TTTC TGAAACAGG TTTGTGGCAGGGGCA TERM 896 828285 - 828264 - H 100 -11.7 -5.58074 | opp_overlap 828264 GAAGCATTAAAAAAA CCTGTTTCA TTTC TGAAACAGG TTTGTGGCAGGGGCA Cthe_0672 828499 - 829314 + | pyrroline-5-carboxylate reductase TERM 897 829454 - 829437 - g 70 -2.7 -5.14563 | GCTGCCATGAAAAAA GTAAGTA TCTA TACTGAC GGTGCTTGTTCCGGA TERM 898 829711 - 829691 - g 70 -2.5 -5.11112 | overlap 829692 829693 829702 AAAGTGGAAGAAAAA CGGCTGGAA GAC TTCCAACAA AGAAGAGGTGAAAAA rnhA 829428 - 829871 + | ribonuclease H Cthe_0674 829892 - 830440 + | NUDIX hydrolase TERM 899 830553 - 830578 + F 100 -10.7 -6.55664 | opp_overlap 830552 830551 830559 TATTTTAAGTAAAGT TTACAATACAT TTTG ATGTATTGTAA TTTTTTTTTATTTTC Cthe_0675 830754 - 831308 + | hypothetical protein Cthe_0676 831659 - 832549 + | tyrosine recombinase XerD subunit TERM 900 832613 - 832634 + F 89 -8.7 -4.63952 | opp_overlap 832613 GTAATATAATAAAAA GGTGGGATG AAGA CATCCTGCC TTTCTTATTTATCCT TERM 901 832634 - 832613 - f 77 -4.3 -5.29716 | opp_overlap 832613 GTAATATAATAAAAA GGTGGGATG AAGA CATCCTGCC TTTCTTATTTATCCT Cthe_0677 832702 - 833868 + | phosphopentomutase TERM 902 833952 - 833932 - g 100 -5.3 -6.28967 | TATAAACAAAAAAAA GCGGGGAGA AGC TCTGTCCGC CGCTGAAATTGATTA TERM 903 834357 - 834342 - g 82 -6.1 -4.93454 | TAAACAAATATAAAA TGGCC ATAGTA GGCCA ATCGCCAAATCTCAC Cthe_0678 833900 - 835201 + | thymidine phosphorylase TERM 904 835630 - 835648 + G 73 -8.8 -3.65812 | opp_overlap 835622 835633 CAGAGTATGCCGCAA GCATGGGA GGT TCCCAGGC TTATATTGAGCCGGG Cthe_0679 835293 - 836507 + | Serine-type D-Ala-D-Ala carboxypeptidase Cthe_0680 836721 - 837374 + | lysine exporter protein LysE/YggA TERM 905 838293 - 838283 - g 75 -5.4 -4.75472 | TTGACAGCAACAAAA GACT TAG AGTC GGAGCAGGAATAAAC TERM 906 838834 - 838822 - g 70 -9.1 -3.25918 | overlap 838818 GAAGGCTCAAACAGA GCCAG GAA CTGGC AGCGTTACGACCATG Cthe_0681 837592 - 839085 + | inositol-5-monophosphate dehydrogenase TERM 907 839102 - 839147 + T 100 -17.8 -4.85599 | opp_overlap 839134 839135, overlap 839100 TGCCGCTTTTTAGCT TGTGCCTCCCACGGGTTTTA GAAGAG TAAAACCTGTGCGGGGCACA TTTTTATACAATAGA TERM 908 839231 - 839204 - T 77 -7.9 -4.10429 | opp_overlap 839204 839208 839210, overlap 839192 839210 AACTATTTTGCAAAA TAAAAATCTCC ATAAAA GGAGATCTTTA TGTATTATCATTTTA TERM 909 839225 - 839210 - T 82 -4.7 -5.45802 | opp_overlap 839210 839208 839204, overlap 839204 TTTGCAAAATAAAAA TCTCC ATAAAA GGAGA TCTTTATGTATTATC Cthe_0682 840372 - 839395 - | hypothetical protein TERM 910 841591 - 841578 - g 70 -9.5 -2.68387 | overlap 841577 841575 TGTCAGAAAATATAT CGCCG TTGA CGGCG GAATGACCGACAACC Cthe_0683 840619 - 841932 + | diaminopimelate decarboxylase TERM 911 841965 - 841988 + F 86 -3.9 -5.80248 | opp_overlap 841955 841965, overlap 841955 AAAATTATAAAACGA GAGCACA TTTCAAATTT TGTGCTC TTTTTTTATATATTC Cthe_0684 842138 - 844771 + | polynucleotide adenylyltransferase region Cthe_0685 844877 - 845548 + | peptidase M50 TERM 912 846254 - 846236 - g 90 -9.6 -4.37067 | opp_overlap 846236 GAAAGATGAGCAAAA GCTATGGC AAT ACCATAGC TCTGTCCGACAGTCC Cthe_0686 845641 - 846630 + | tryptophanyl-tRNA synthetase Cthe_0687 846669 - 847463 + | condensin subunit ScpA Cthe_0688 847483 - 848079 + | condensin subunit ScpB Cthe_0689 848110 - 848679 + | RDD domain-containing protein TERM 913 848740 - 848724 - f 71 -5.2 -4.56775 | opp_overlap 848724 ATTGCTGCGGAAAAA TACACA ATTTA TGTGTA TTTTTTGTTTTTATA TERM 914 848724 - 848740 + F 95 -5.2 -5.98675 | opp_overlap 848724 ATTGCTGCGGAAAAA TACACA ATTTA TGTGTA TTTTTTGTTTTTATA Cthe_0690 848784 - 849392 + | hypothetical protein TERM 915 849858 - 849846 - g 75 -2.7 -5.27335 | TTCTGTAAAGAAAAA TCTCA AAG TGAAA AAAGAAATAAAGCCC Cthe_0691 849436 - 849924 + | hypothetical protein TERM 916 849945 - 849919 - T 74 -9.5 -2.74054 | opp_overlap 849919 849925, overlap 849925 AAAGAAGATGAGAAT GAATAAGTGGG AAAAA CCCACTTTTTC TTTATAAATTTTTTT TERM 917 849919 - 849945 + T 86 -9.5 -4.13225 | opp_overlap 849919 849925, overlap 849925 AAAGAAGATGAGAAT GAATAAGTGGG AAAAA CCCACTTTTTC TTTATAAATTTTTTT TERM 918 849925 - 849939 + T 100 -7.1 -5.38958 | opp_overlap 849925 849919, overlap 849919 GATGAGAATGAATAA GTGGG AAAAA CCCAC TTTTTCTTTATAAAT TERM 919 849939 - 849925 - T 72 -7.1 -3.86981 | opp_overlap 849919 849925, overlap 849919 GATGAGAATGAATAA GTGGG AAAAA CCCAC TTTTTCTTTATAAAT Cthe_0692 851244 - 850174 - | integrase catalytic subunit TERM 920 850585 - 850595 + g 74 -4.6 -4.90013 | opp_overlap 850585 CAAAAGAAACAATAA CTCG TAG CGGG TTTTTCGTTCAGTTA TERM 921 851732 - 851709 - g 75 -5.4 -4.79683 | AATGGAGAAAAGAAA GGTTTATATA GCAT TAAATAAACC GGTGGGGTACATAAG Cthe_0693 851521 - 852240 + | ribosomal large subunit pseudouridine synthase B Cthe_0694 852466 - 853293 + | spermidine synthase Cthe_0695 853324 - 854193 + | agmatinase Cthe_0696 854202 - 854768 + | putative rRNA methylase TERM 922 854861 - 854833 - T 89 -10.4 -3.80569 | opp_overlap 854831 854835, overlap 854835 854860 CAAAATACAGGCAAA TATTTAAGGGGC TTGTT GCCCCTTAAATT GCTTTTGATGCAAAC TERM 923 854859 - 854835 - T 100 -13 -3.46904 | opp_overlap 854831 854835, overlap 854833 AAATACAGGCAAATA TTTAAGGGGC TTGTT GCCCCTTAAA TTGCTTTTGATGCAA TERM 924 854835 - 854859 + T 100 -13 -3.71672 | opp_overlap 854835 854833, overlap 854831 AAATACAGGCAAATA TTTAAGGGGC TTGTT GCCCCTTAAA TTGCTTTTGATGCAA Cthe_0697 855589 - 854855 - | type IV pilus assembly PilZ TERM 925 856515 - 856505 - g 74 -4.6 -4.90013 | opp_overlap 856505 TAACTGAACGAAAAA CCCG CTA CGAG TTATTGTTTCTTTTG Cthe_0698 855856 - 856926 + | integrase catalytic subunit TERM 926 857446 - 857434 - g 70 -5.5 -4.33739 | GAAAAAATCGCAAAA CAGCA TGA TGCCG GAAAAATGACAGCAA TERM 927 857571 - 857560 - g 73 -2.2 -5.21683 | ATGCAAAAAAAGAAA GTCC CGGG AGAC GGTGTTGTAACAGGG Cthe_0699 857350 - 858900 + | carboxyl transferase Cthe_0700 859125 - 859523 + | biotin/lipoyl attachment protein TERM 928 860114 - 860129 + G 70 -3.3 -4.83615 | TATACAATAAGTCCC GTTCA CAATCT TGAAC TTTTTGTCAAAGATG Cthe_0701 859667 - 861064 + | oxaloacetate decarboxylase TERM 929 861157 - 861133 - f 100 -6.5 -5.80951 | gap 1, opp_overlap 861133 ATTCAAAATAAAAAA CTCAGG-ACC TGACAT GGTGCCTGAG TTTTTTGCTGTATTC TERM 930 861133 - 861157 + F 84 -6.5 -5.27399 | gap 1, opp_overlap 861133 ATTCAAAATAAAAAA CTCAGG-ACC TGACAT GGTGCCTGAG TTTTTTGCTGTATTC TERM 931 861637 - 861623 - g 71 -5 -4.55093 | GTATATAATAAGAAA TCATCC TTT AGATGA CAAATCCCCCAATAA Cthe_0702 861318 - 861845 + | hypothetical protein Cthe_0703 861963 - 862205 + | hypothetical protein Cthe_0704 862913 - 862266 - | hypothetical protein TERM 932 862574 - 862599 + g 71 -9.9 -2.8552 | gap 1, overlap 862573 CCCCAAGTCTCATTG TGTAGAGCATGA AAT TC-TGCTCTACA ATTTCCTGAATACGG Cthe_0705 863024 - 863260 + | hypothetical protein TERM 933 863994 - 864009 + G 72 -4.7 -4.68384 | opp_overlap 863994 ATGTTATTACAGCAA GAAGC GACATG GCTTC TTTTGTTGACTCACT Cthe_0706 863285 - 864184 + | RpiR family transcriptional regulator Cthe_0707 864189 - 864818 + | phosphoglycerate mutase TERM 934 865031 - 865046 + G 89 -5.4 -5.5208 | opp_overlap 865031 GATTAATTGAGAATA TTCCTG GAAA CGGGAA TTTTTTATATTCTGC Cthe_0708 864841 - 866070 + | FAD dependent oxidoreductase Cthe_0709 866176 - 866676 + | hypothetical protein Cthe_0710 866814 - 867248 + | hypothetical protein Cthe_0711 867331 - 867687 + | chorismate mutase Cthe_0712 867755 - 868438 + | cytidylate kinase TERM 935 868887 - 868900 + G 70 -8.1 -3.65902 | CCTGTGGCAATTTCA GGACG TTAC CGTCC TTTCAGTAAAATAAA Cthe_0713 868428 - 869039 + | 1-acyl-sn-glycerol-3-phosphate acyltransferase TERM 936 869360 - 869345 - g 85 -2.6 -5.83822 | overlap 869352 CATACGTAAAAAAAA TTCACA ACCT TGTAAA GGAGAAAAGTGAGGA TERM 937 869528 - 869509 - g 72 -4.3 -4.77759 | ACAAGCGACGAAAAA GTTTGCG TAGTTG CACAAAC AACGATAACAAACGA TERM 938 869597 - 869581 - g 72 -3.1 -5.0917 | GCATTAAAAAAGAAA TTCAAAA ATA TTTTAAA ATTTGATACAATATG Cthe_0714 869041 - 871125 + | 4-hydroxy-3-methylbut-2-enyl diphosphate reductase TERM 939 871207 - 871229 + F 82 -7.7 -4.62957 | opp_overlap 871207, overlap 871224 TAAATTGCTTTCAAA GCCTGTTGC AAAAC GTAGCAGGC TTTTCGTTTGCTTAT Cthe_0715 871478 - 871852 + | S-adenosylmethionine decarboxylase proenzyme TERM 940 871870 - 871897 + F 100 -12.9 -3.88029 | opp_overlap 871875, overlap 871875 GTTAAAATAGATCTT TAAAAGCGTGC CGGTAT GCACGCTTTTA TGTTTTATATACCGT TERM 941 871875 - 871892 + F 91 -8.4 -4.95843 | opp_overlap 871875, overlap 871870 AATAGATCTTTAAAA GCGTGC CGGTAT GCACGC TTTTATGTTTTATAT TERM 942 871892 - 871875 - f 79 -8.4 -4.1413 | opp_overlap 871875 871870 AATAGATCTTTAAAA GCGTGC CGGTAT GCACGC TTTTATGTTTTATAT Cthe_0716 872069 - 872479 + | nucleoside diphosphate kinase Cthe_0717 872583 - 873365 + | MCP methyltransferase, CheR-type Cthe_0718 873659 - 873946 + | hypothetical protein Cthe_0719 874096 - 874527 + | BadM/Rrf2 family transcriptional regulator TERM 943 874627 - 874601 - f 82 -7.6 -4.67607 | opp_overlap 874607, overlap 874607 874618 TGGGGAATAAATAAA TTAAAATAAATT AAA AATTTATTCTAA ACTATACTATAGTTA TERM 944 874621 - 874607 - f 70 -4.4 -4.74219 | opp_overlap 874607, overlap 874601 874618 ATAAATAAATTAAAA TAAATT AAA AATTTA TTCTAAACTATACTA TERM 945 874845 - 874857 + G 82 -7.7 -4.64334 | AAGGCAATTGGCGCG CTTCC CAG GGAAG TTTTCTTCACCGGTT TERM 946 875556 - 875582 + G 72 -10.3 -2.6952 | opp_overlap 875555 875556, overlap 875574 CCGGGCAACGTAAAC TTCTCCTTTGA ATTTA TCGAAGGAGAA TCCCTTCTTCTGATG Cthe_0720 874656 - 875840 + | aminotransferase, class V TERM 947 875923 - 875907 - g 100 -13.7 -4.39571 | GGGAGAAATTGAAAA CGCCGAC GGT GTCGGCG AAGTCGGCAATGCAA Cthe_0721 875842 - 876291 + | nitrogen-fixing NifU-like protein Cthe_0722 876310 - 877389 + | tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase TERM 948 877682 - 877712 + F 100 -10.5 -5.7946 | overlap 877677 GGTGGTACCACGGGA GCTTTCTCGTCCT TAAGC AGGGCGAAAAAGC TTTTTTTATTAAACC TERM 949 878158 - 878131 - g 70 -9.4 -2.53903 | gap 1, overlap 878130 TGCTTTAAAAAGCAG CTT-TCCAAATTC ATT GAATTTGGAGAAG GAAAAGCCATAATGG TERM 950 878236 - 878270 + G 100 -12.3 -4.18197 | AGAGATATAGGAGTG CATTTTTCCGTCAAC CGAAT GTTGACGGCAGAATG TTTTAAATCCAGACT Cthe_0723 877816 - 879042 + | tyrosyl-tRNA synthetase TERM 951 879106 - 879054 - T 77 -3 -5.65678 | gap 1, opp_overlap 879065 879068 879096, overlap 879065 879068 ATAAAACACAAAAAA GACATAGAAAACAAGCTTAGAGG TTTGCATG CCTCTAAGCTTCTTTTA-ATGTT TAAAGCTTGTTTTAA TERM 952 879096 - 879065 - T 80 -7.4 -4.7189 | opp_overlap 879065 879068, overlap 879054 879068 AAAAGACATAGAAAA CAAGCTTAGAGG TTTGCATG CCTCTAAGCTTC TTTTAATGTTTAAAG TERM 953 879065 - 879096 + T 85 -8.1 -4.49756 | opp_overlap 879065 879054 879068, overlap 879068 AAAAGACATAGAAAA CAAGCTTAGAGGT TTGCAT GCCTCTAAGCTTC TTTTAATGTTTAAAG TERM 954 879093 - 879068 - T 89 -9.1 -4.42325 | opp_overlap 879065 879068, overlap 879065 879054 AGACATAGAAAACAA GCTTAGAGG TTTGCATG CCTCTAAGC TTCTTTTAATGTTTA TERM 955 879068 - 879093 + T 91 -9.8 -4.34993 | opp_overlap 879068 879065 879054, overlap 879065 AGACATAGAAAACAA GCTTAGAGGT TTGCAT GCCTCTAAGC TTCTTTTAATGTTTA Cthe_0724 880038 - 879241 - | HisJ family histidinol phosphate phosphatase TERM 956 881511 - 881499 - g 90 -9.1 -4.85129 | opp_overlap 881496 881499 ATGACATAGGAAAAA TCGGC ACG GCCGA TGATATTCTTTTCAA Cthe_0725 880415 - 881911 + | response regulator receiver modulated metal dependent phosphohydrolase TERM 957 881979 - 881962 - f 76 -6.3 -4.72986 | opp_overlap 881962 TATTTGGATTAAAAA GAAGAGC ATAT ACTCTTC TTTTTTTATCACCAC TERM 958 881962 - 881979 + F 87 -5.6 -5.60993 | opp_overlap 881962 TATTTGGATTAAAAA GAAGAG CATATA CTCTTC TTTTTTTATCACCAC TERM 959 882143 - 882119 - g 70 -5.7 -4.37658 | AACCGCGGGACAAAA GTTGTGGGAAA ACC TGTCCTACAAC TGCCCCAATGTTTGG Cthe_0726 882024 - 883526 + | putative aminopeptidase 1 TERM 960 883588 - 883530 - T 100 -14.3 -5.35815 | gap 1, opp_overlap 883533, overlap 883533 TATATCAAATAAAAA TAATGACTCACAACGCAAACTCTCTCAA ACTT TTGAAAG-GTTTATGTTGTGAGTCATTT ATTTTACTTATACCT TERM 961 883533 - 883585 + T 100 -13.8 -4.80487 | gap 1, opp_overlap 883530 883533 ATCAAATAAAAATAA TGACTCACAACGCAAACTCTCTCAA ACTT TTGAAAG-GTTTATGTTGTGAGTCA TTTATTTTACTTATA TERM 962 883585 - 883533 - T 100 -16 -4.74052 | gap 1, opp_overlap 883533, overlap 883530 ATCAAATAAAAATAA TGACTCACAACGCAAACTCTCTCAA ACTT TTGAAAG-GTTTATGTTGTGAGTCA TTTATTTTACTTATA Cthe_0727 884518 - 883592 - | cell envelope-related transcriptional attenuator TERM 963 883963 - 883987 + g 71 -4.9 -4.63044 | overlap 883964 TAAATTTCTCGGCCA TGGCACCGTCA AAA TGATGCTGCCC TTTCTTTATATGAAT TERM 964 883964 - 883986 + g 70 -8.4 -3.36742 | overlap 883963 AAATTTCTCGGCCAT GGCACCGTCA AAA TGATGCTGCC CTTTCTTTATATGAA TERM 965 884164 - 884189 + g 82 -6.1 -5.00388 | gap 1, overlap 884181 TCTGAACTGCAAGTT CTCCGCCT-CCT GTG GGGTAAGCGGAG TTTATTTTTGCTTTC TERM 966 884181 - 884193 + g 70 -2.7 -5.09521 | overlap 884164 CCGCCTCCTGTGGGG TAAGC GGA GTTTA TTTTTGCTTTCTTGC xerC 885679 - 884687 - | site-specific tyrosine recombinase XerC TERM 967 885300 - 885317 + g 70 -5.5 -4.34402 | ATTATTTTGGGAGAC TCCAGCT CGGC AGCAGGA TTTTGCTCTAAAAGC TERM 968 885693 - 885705 + H 84 -3.5 -5.8901 | ATTTTGACATCTCCC TATAT ATT ATATA TTTTTTATTTTATAT Cthe_0729 885954 - 887567 + | cellulosome enzyme, dockerin type I TERM 969 887656 - 887705 + F 100 -15.3 -3.1211 | opp_overlap 887657 887659, overlap 887661 887663 887666 887671 GCCATACCGAAATAA ATATGCATAAGACAACAGCCTGT TTAT ACAGACTGTTGTCTTATGTATGA TTAAGTAATATAATA TERM 970 887704 - 887657 - f 100 -16.6 -4.48299 | opp_overlap 887656 887661 887663 887666 887671, overlap 887659 CCATACCGAAATAAA TATGCATAAGACAACAGCCTGT TTAT ACAGACTGTTGTCTTATGTATG ATTAAGTAATATAAT TERM 971 887702 - 887659 - f 100 -19.2 -3.84346 | opp_overlap 887656 887661 887663 887666 887671, overlap 887657 ATACCGAAATAAATA TGCATAAGACAACAGCCTGT TTAT ACAGACTGTTGTCTTATGTA TGATTAAGTAATATA TERM 972 887661 - 887700 + F 100 -19.6 -2.92668 | opp_overlap 887659 887657, overlap 887656 887663 887666 887671 ACCGAAATAAATATG CATAAGACAACAGCCTGT TTAT ACAGACTGTTGTCTTATG TATGATTAAGTAATA TERM 973 887663 - 887698 + F 100 -16.4 -3.0127 | opp_overlap 887659 887657, overlap 887661 887656 887666 887671 CGAAATAAATATGCA TAAGACAACAGCCTGT TTAT ACAGACTGTTGTCTTA TGTATGATTAAGTAA TERM 974 887666 - 887695 + F 100 -13.7 -3.646 | opp_overlap 887659 887657, overlap 887663 887661 887656 887671 AATAAATATGCATAA GACAACAGCCTGT TTAT ACAGACTGTTGTC TTATGTATGATTAAG Cthe_0730 887774 - 888457 + | hypothetical protein TERM 975 888517 - 888527 + F 79 -2.6 -5.7946 | opp_overlap 888517 ATTGAAACTGTAATA TAAA ATT TTTA TTTTTTTGTTGGAAC Cthe_0731 888602 - 889114 + | shikimate kinase Cthe_0732 889176 - 890360 + | chorismate synthase TERM 976 890406 - 890395 - T 78 -2.2 -5.72207 | TTGAAATCAAAAAAA GCCT CAAA AAGC ATGATAATAGCTTGT Cthe_0733 891110 - 890454 - | type IV pilus assembly PilZ TERM 977 891547 - 891590 + r 79 -2.6 -5.75342 | opp_overlap 891559 891561, overlap 891549 891551 891553 891556 TTTTTCTAAAAAACC TCCCTCCAATTATACAAAAT TTTT ATTTTGTATAATTGTCTGTA TTTTTTTTACCCCCC TERM 978 891553 - 891584 + r 100 -13.4 -3.4853 | opp_overlap 891559 891561, overlap 891551 891549 891547 891556 TAAAAAACCTCCCTC CAATTATACAAAAT TTTT ATTTTGTATAATTG TCTGTATTTTTTTTA TERM 979 891556 - 891581 + r 81 -9.3 -3.80055 | opp_overlap 891559 891561, overlap 891553 891551 891549 891547 AAAACCTCCCTCCAA TTATACAAAAT TTTT ATTTTGTATAA TTGTCTGTATTTTTT Cthe_0734 892879 - 891758 - | peptidase M23B Cthe_0735 893807 - 893001 - | cellulosome anchoring protein, cohesin region TERM 980 893960 - 893934 - R 100 -10.8 -5.09521 | opp_overlap 893933 893934 893934, overlap 893935 TTAATAAATGAAAAA GTGCAGGCGGCA TTT CGCCACCTGCAG CATTTTACTTGATTG TERM 981 893959 - 893935 - R 100 -14.3 -3.64086 | opp_overlap 893934 893934 893933, overlap 893934 TAATAAATGAAAAAG TGCAGGCGGCA TTT CGCCACCTGCA GCATTTTACTTGATT Cthe_0736 897904 - 893987 - | cellulosome anchoring protein, cohesin region TERM 982 895671 - 895649 - G 80 -10 -3.64703 | overlap 895652 TCCGTTCCAGTCAAA CAAGTATGTT CCT AACACACTTG AAGGCATTGTAATGG TERM 983 896836 - 896865 + g 71 -6.5 -4.23104 | opp_overlap 896835 896838, overlap 896838 AGTCAAAAATCATAG TACCTTCAATGCT TCCA GGCATTGAAAGTG TTTCTTCAAATTTAA TERM 984 897946 - 897960 + r 72 -8.6 -3.09834 | opp_overlap 897946 TATTATCTCTATATA GGCATT CAG AATGCC TTAAATCATAACATG TERM 985 897960 - 897946 - R 71 -8.6 -2.88861 | opp_overlap 897946 TATTATCTCTATATA GGCATT CAG AATGCC TTAAATCATAACATG Cthe_0737 899335 - 898706 - | phosphopantethiene-protein transferase TERM 986 899938 - 899972 + r 93 -9.3 -4.78839 | opp_overlap 899948, overlap 899943 CCCGAAGCAAATAGC TGAAAGCAAAGGGGC TTTTC GCCCCTAAGCTTTTA TTTTATTATCGCCTT TERM 987 899943 - 899967 + r 88 -7 -5.31091 | opp_overlap 899948, overlap 899938 AGCAAATAGCTGAAA GCAAAGGGGC TTTTC GCCCCTAAGC TTTTATTTTATTATC TERM 988 899962 - 899948 - R 82 -8.5 -4.07647 | opp_overlap 899943 899938 ATAGCTGAAAGCAAA GGGGC TTTTC GCCCC TAAGCTTTTATTTTA Cthe_0738 900206 - 899994 - | copper ion binding protein Cthe_0739 900407 - 902131 + | hypothetical protein Cthe_0740 902883 - 902146 - | GntR family transcriptional regulator TERM 989 902570 - 902582 + g 71 -6.3 -4.25325 | overlap 902557 902555 GTTATTTTCTCTATT GAGAT AAT ATCTC TTTCATTTGTTATCT Cthe_0741 904529 - 903102 - | adenylosuccinate lyase Cthe_0742 905159 - 904749 - | hypothetical protein Cthe_0743 906794 - 905340 - | MATE efflux family protein TERM 990 906451 - 906429 - G 75 -5.6 -4.82901 | TCCTCCGGATAAAAA TACTGCCAGT GCA ACTGCCAATA TCACAGCAGAAGCCC Cthe_0744 909805 - 906953 - | copper amine oxidase-like protein TERM 991 910454 - 910432 - g 74 -4.8 -4.76075 | overlap 910435 AGTATATGAAGAAAA GGACGCTTTT GTG AAAAGCGGGC AGCTTAAATACATAC TERM 992 910451 - 910435 - g 75 -9.5 -3.28327 | overlap 910432 ATATGAAGAAAAGGA CGCTTTT GTG AAAAGCG GGCAGCTTAAATACA TERM 993 911660 - 911686 + G 73 -6.6 -4.21319 | opp_overlap 911660, overlap 911658 911657 911662 GCATGGCCTGCAAGA GTGTCCGAAGGA CTC TCCTTTAGATAC TTTATTGACCTTACT Cthe_0745 910112 - 912304 + | glycoside hydrolase family protein TERM 994 912412 - 912434 + T 100 -11.3 -5.67283 | opp_overlap 912412 912414 ACCACAAATAAAAAA CTCAGGGAC AAAAA GTCCCTGGG TTTTTTATTTACGTT TERM 995 912434 - 912412 - T 100 -9.1 -5.73978 | opp_overlap 912412, overlap 912414 ACCACAAATAAAAAA CTCAGGGAC AAAAA GTCCCTGGG TTTTTTATTTACGTT TERM 996 912432 - 912414 - T 83 -10.3 -2.99541 | opp_overlap 912412, overlap 912412 CACAAATAAAAAACT CAGGGAC AAAAA GTCCCTG GGTTTTTTATTTACG Cthe_0746 913067 - 912459 - | signal peptide prediction TERM 997 913333 - 913280 - R 89 -9.2 -4.43351 | gap 1, opp_overlap 913280 913280 913283, overlap 913277 913281 ATATTTTAAAAACAA GCACGATATGCTTTCCG-TCTAC TTTCCCCCG GTAAAACAGAAAGCATATCGTGA CTTTCCACTAAAAAA TERM 998 913332 - 913281 - R 100 -12.7 -3.24926 | gap 1, opp_overlap 913280 913280 913283, overlap 913280 913277 TATTTTAAAAACAAG CACGATATGCTTTCCG-TCTAC TTTCCCCCG GTAAAACAGAAAGCATATCGTG ACTTTCCACTAAAAA Cthe_0747 914500 - 913436 - | extracellular solute-binding protein TERM 999 913533 - 913556 + g 82 -6 -4.9072 | CACTTGTCTATAATT TCCTGTGG AGGGTAAG CCGCAGGA TTGTTTTTTATTTCT Cthe_0748 915291 - 914497 - | binding-protein-dependent transport systems inner membrane component TERM 1000 914758 - 914728 - G 70 -2.5 -5.17507 | AAAAGCCAATAAAAA TCCTGTGATAATG TTGGG CATAATCTCCGGA ATAATAACCTTCCAG Cthe_0749 916112 - 915285 - | binding-protein-dependent transport systems inner membrane component Cthe_0750 917167 - 916109 - | spermidine/putrescine ABC transporter ATPase subunit Cthe_0751 917716 - 917177 - | XRE family transcriptional regulator TERM 1001 917796 - 917780 - R 85 -8.1 -4.58773 | opp_overlap 917770 917777 TTTACTAAACCAAAA GTTTACT TAT AGTAAAC ATCTAGATTTTATTA TERM 1002 917981 - 917964 - R 73 -4.3 -4.98758 | opp_overlap 917966 AAAAATGGATAAAAA TATATAT TGTA ATATATA GATTGTAATATATGT Cthe_0752 918297 - 918058 - | hypothetical protein Cthe_0753 918951 - 918376 - | hypothetical protein Cthe_0754 920177 - 919344 - | hypothetical protein TERM 1003 920294 - 920280 - R 88 -7.2 -4.93365 | GTCTATAATTAAAAA TGCATT AAA AATGCA TACAATAAAAGCTTA TERM 1004 920525 - 920503 - R 100 -16.4 -4.74706 | opp_overlap 920503 TTCAATACGCAAAAA GCGGGATTCT GAA AGAATCCCGC TCTATGTAACGTGCC TERM 1005 920503 - 920525 + r 100 -16.4 -3.00022 | opp_overlap 920503 TTCAATACGCAAAAA GCGGGATTCT GAA AGAATCCCGC TCTATGTAACGTGCC Cthe_0755 921735 - 920548 - | aspartate aminotransferase TERM 1006 920663 - 920673 + g 73 -5.4 -4.56597 | opp_overlap 920663 GAACCCGGAACCAAA GCAA CAT TTGC TTTTTCCAGCAGAGC Cthe_0756 923395 - 922460 - | thermostable dipeptidase Cthe_0757 924240 - 923569 - | DNA repair protein RadC TERM 1007 924175 - 924153 - G 85 -4 -5.55855 | TTGAAAAAAACAAAA GCAGTTCCAG CAC CTGATGCTGC TCAAAACTGTCAAGT Cthe_0758 924774 - 924382 - | hypothetical protein TERM 1008 924552 - 924581 + g 70 -7.9 -3.73336 | overlap 924553 TTCTTATATTCACAG CCTCCCTTGGATA GCCG TATCCAAGAGAGC TTCTTGCCTTGACCT TERM 1009 924553 - 924580 + g 80 -11.4 -2.8352 | overlap 924552 TCTTATATTCACAGC CTCCCTTGGATA GCCG TATCCAAGAGAG CTTCTTGCCTTGACC Cthe_0759 925073 - 924789 - | flagellar biosynthesis TERM 1010 924920 - 924939 + g 78 -7.2 -4.38472 | overlap 924917 CAGCGGCAAGCTCTT CATTCTCA TATA TGGGAATG TTGTTTTCCTTTGCC TERM 1011 925035 - 925054 + g 87 -5 -5.52384 | CTCAGGTGAATATTT TAAAGCTG CCAC CTGCTTTA TTTTTTTCCTGCCAG Cthe_0760 926725 - 925091 - | hypothetical protein TERM 1012 925480 - 925457 - G 77 -9.8 -3.5393 | opp_overlap 925453 925452 925450 925448 AGTATTCTTGTCAAA TATTTTCAGA GGTA TCTGAAAATA TACGGTATGTTTGTT TERM 1013 925681 - 925693 + g 81 -2.7 -5.66684 | TAATTTTTGCAAACA TCTTT TCA AAGGA TTTTTTTATAACTTG TERM 1014 926404 - 926420 + g 85 -6.6 -5.01811 | TGTCAGGCTTTATGC CAAGCT GTGCA AGCTTG TTTTTAATTTCGTCC Cthe_0761 927533 - 926763 - | RNase HII TERM 1015 927045 - 927035 - G 75 -5.4 -4.67357 | AATCAATAAAAAGAA TGTC CGG GACA GGCTTTAGATTGCCA TERM 1016 927473 - 927461 - G 71 -6.3 -4.2528 | opp_overlap 927460 927461, overlap 927457 CCTTAAGGCAATAAA GCTTT TCC AAAGC CTTATCCAGGTCCAA Cthe_0762 928263 - 927610 - | hypothetical protein Cthe_0763 929158 - 928283 - | GTP-binding protein YlqF Cthe_0764 929848 - 929183 - | signal peptidase I TERM 1017 929990 - 929965 - R 100 -14.9 -3.60792 | opp_overlap 929965 929969, overlap 929969 TTTTGAATTGCGAAA TAAAGGGGACT TGCA AGTCCCCTTTA TTTTTAACTATTTTA TERM 1018 929965 - 929990 + r 100 -14.9 -4.80396 | opp_overlap 929965 929969, overlap 929969 TTTTGAATTGCGAAA TAAAGGGGACT TGCA AGTCCCCTTTA TTTTTAACTATTTTA TERM 1019 929969 - 929986 + r 100 -11.3 -4.89966 | opp_overlap 929965 929969, overlap 929965 GAATTGCGAAATAAA GGGGACT TGCA AGTCCCC TTTATTTTTAACTAT TERM 1020 929986 - 929969 - R 100 -11.3 -4.43877 | opp_overlap 929969 929965, overlap 929965 GAATTGCGAAATAAA GGGGACT TGCA AGTCCCC TTTATTTTTAACTAT Cthe_0765 930347 - 930003 - | 50S ribosomal protein L19P TERM 1021 930435 - 930445 + r 79 -2.6 -5.82388 | opp_overlap 930435 ACCATAGACTTAATA TATT GTA AATA TTTTTTTTGCCATTT TERM 1022 930522 - 930534 + r 70 -6.3 -4.34488 | AAGTCTCTTTCAACG CTTCT TCC AGAAG TTTCTTGTCCGTCTC Cthe_0766 931242 - 930499 - | tRNA (Guanine37-N1) methyltransferase Cthe_0767 931753 - 931229 - | 16S rRNA processing protein RimM TERM 1023 931864 - 931836 - R 100 -9.6 -5.2166 | opp_overlap 931836 CAACAAGCTAAAAAA TGTGGACAAGAG ACTGA CCCCTGCCCACA TTTTTTTACTGTAAT TERM 1024 931836 - 931864 + r 77 -3 -5.59357 | opp_overlap 931836 CAACAAGCTAAAAAA TGTGGACAAGAG ACTGA CCCCTGCCCACA TTTTTTTACTGTAAT Cthe_0768 932100 - 931870 - | nucleic acid binding protein rpsP 932419 - 932174 - | 30S ribosomal protein S16 Cthe_0770 933799 - 932459 - | signal recognition particle subunit FFH/SRP54 (srp54) TERM 1025 933704 - 933685 - G 73 -7.1 -4.07568 | opp_overlap 933685 CGTCCGCCTCCAAAA GCGCAAG CTTTAT CTCGCGC ATCATTTCTTTTACG Cthe_0771 934194 - 933841 - | putative helix-turn-helix protein, YlxM/p13-like protein TERM 1026 934307 - 934289 - R 74 -6.8 -4.16921 | opp_overlap 934296, overlap 934296 TAATAATCTGTAAAA GAAAAAAG TAC CCTTTTTC ATTGAAAAGAGTACT TERM 1027 934321 - 934296 - R 100 -7 -5.79595 | opp_overlap 934296, overlap 934289 CTGTAAAAGAAAAAA GTACCCTTTT TCATTG AAAAGAGTAC TTTAAAGCAATATCC Cthe_0772 934708 - 934421 - | peptidoglycan-binding LysM TERM 1028 934955 - 934935 - g 70 -9.9 -2.53268 | overlap 934934 ATAAACGAAAAGCAG CAAAAAATC CTT GATTTTTTG AACGAACAGATAGAA TERM 1029 935259 - 935286 + G 71 -6.4 -4.30576 | GATACTTTTCCGCTC CCTTTGGATTTT GTCC AAAATTCAACGG TTTTCATGCTCCGCG Cthe_0773 934908 - 935549 + | SOS-response transcriptional repressor, LexA Cthe_0774 935926 - 935678 - | RNA chaperone Hfq Cthe_0775 936974 - 936033 - | tRNA delta(2)-isopentenylpyrophosphate transferase Cthe_0776 939259 - 936992 - | DNA mismatch repair protein MutL Cthe_0777 941941 - 939329 - | DNA mismatch repair protein MutS Cthe_0778 942365 - 941973 - | hypothetical protein Cthe_0779 943861 - 942509 - | copper amine oxidase-like protein Cthe_0780 944650 - 943967 - | HAD family hydrolase Cthe_0781 945201 - 944713 - | GCN5-related N-acetyltransferase Cthe_0782 945895 - 945374 - | putative methyl-accepting chemotaxis sensory transducer Cthe_0783 947750 - 946308 - | RNA modification protein Cthe_0784 948687 - 947812 - | hypothetical protein TERM 1030 948511 - 948537 + g 72 -4.4 -4.7497 | ATTCTCTTTTTCCTT GTCTATAAACTC CAG GAGCTTATTGGC TTTTTCCTCGCTGCC Cthe_0785 949138 - 949440 + | hypothetical protein TERM 1031 949453 - 949477 + T 74 -5.6 -4.76478 | overlap 949454 TAATTTCTAATTTTA ACTCCAGGGC TTTAT GCACTGGAGC TTTTACTTTATTTTA TERM 1032 949454 - 949476 + T 78 -9.1 -3.43447 | overlap 949453 AATTTCTAATTTTAA CTCCAGGGC TTTAT GCACTGGAG CTTTTACTTTATTTT TERM 1033 949666 - 949635 - T 100 -9.5 -5.4588 | gap 1, opp_overlap 949635 CAAAAGTACAAAAAA GCCAGCCTTCGCTG TCATT CACC-AAGGCTGGC TATTACCCTCTTTAT TERM 1034 949635 - 949666 + T 76 -9.5 -3.1162 | gap 1, opp_overlap 949635 CAAAAGTACAAAAAA GCCAGCCTTCGCTG TCATT CACC-AAGGCTGGC TATTACCCTCTTTAT Cthe_0786 950731 - 949649 - | 3-dehydroquinate synthase TERM 1035 949825 - 949836 + g 70 -5.8 -4.38154 | TGCCTTCAAGCCTTG TCGG AAGC CCGA TTTTATCCAAAGTGT TERM 1036 950189 - 950217 + g 71 -3.8 -4.87807 | overlap 950190 GACCACTTCTGCAAG TCCTGCCTTAAG TTCCC TTTCGGGCAGGG TTTTTAATGTATTGA ileS 953605 - 950810 - | isoleucyl-tRNA synthetase TERM 1037 953702 - 953678 - R 100 -12.2 -5.80951 | opp_overlap 953676 953678, overlap 953697 AGCCAAAACAAAAAA CTCTCATCCC AAAAA GGGACGAGAG TATTCTCACGCGGTA TERM 1038 953678 - 953702 + r 82 -10 -3.21593 | opp_overlap 953678 953697, overlap 953676 AGCCAAAACAAAAAA CTCTCATCCC AAAAA GGGACGAGAG TATTCTCACGCGGTA TERM 1039 953765 - 953728 - R 81 -10.3 -2.80796 | opp_overlap 953727 953729 953732 953738, overlap 953727 953731 CGGTACCACCCAAAT TTATTATGAATATATAT TCAT ATATATATTCATAATCA CTCAATTTGATTAAC TERM 1040 953762 - 953731 - R 87 -12 -2.66748 | opp_overlap 953729 953727 953732 953738, overlap 953728 953727 TACCACCCAAATTTA TTATGAATATATAT TCAT ATATATATTCATAA TCACTCAATTTGATT Cthe_0788 954470 - 954006 - | hypothetical protein Cthe_0789 955275 - 954484 - | RNA-binding S4 TERM 1041 954614 - 954639 + g 100 -11.9 -4.67556 | AGCCTTGCAGGATTG GTGGCCGTC TCCCAATT GACGGCCAC TTTTTCCCCTCTTAT Cthe_0790 955586 - 955302 - | hythetical protein Cthe_0791 956073 - 955606 - | hypothetical protein Cthe_0792 956863 - 956159 - | hypothetical protein Cthe_0793 958168 - 956900 - | hypothetical protein TERM 1042 957362 - 957352 - G 71 -4 -4.91109 | opp_overlap 957352 TGTCCAGGACAAAAA CTAT ATA ATAG TCTATGCCGCCAATC TERM 1043 957461 - 957480 + g 74 -4.2 -5.055 | overlap 957463 TATCATACCAAGCAT TTCCGGAG TAAT TTCCGGTA TTTTTTCAGGATTGA TERM 1044 957463 - 957478 + g 73 -6.8 -4.15235 | overlap 957461 TCATACCAAGCATTT CCGGAG TAAT TTCCGG TATTTTTTCAGGATT TERM 1045 958039 - 958052 + g 71 -5.3 -4.62783 | CCCCCATTCTTATTA TATCC GTGT GGATA TTTTTGCCGTAAATC Cthe_0794 959480 - 958188 - | aluminium resistance protein TERM 1046 958728 - 958755 + g 75 -2.5 -5.24129 | opp_overlap 958725 TCCGGCAACATATCC TCCCGTAGGAG CAAGAC CACCGCCGGGA TTTTTTATAAGAGAA Cthe_0795 961351 - 959624 - | alpha amylase, catalytic region TERM 1047 960158 - 960170 + g 72 -3.3 -5.10208 | TATTATATTTACCAG GCTGC TTA GCACC TTTTTGTTAAACTTC Cthe_0796 961607 - 961341 - | hypothetical protein TERM 1048 961580 - 961555 - G 89 -8.9 -4.82901 | opp_overlap 961553 961555 961556, overlap 961556 GTGCCGGCATAAAAA TGACCCCTGCC ATCA GGCAGAGGCCG TCTTTTTAAAATCCT TERM 1049 961579 - 961556 - G 90 -12.4 -3.49419 | opp_overlap 961555 961553 961556, overlap 961555 TGCCGGCATAAAAAT GACCCCTGCC ATCA GGCAGAGGCC GTCTTTTTAAAATCC Cthe_0797 964041 - 961597 - | glycoside hydrolase family protein TERM 1050 962616 - 962637 + g 76 -4.5 -5.1675 | overlap 962618 CCTCCGCAGGAAATT TGTCTATTG AGCG CAGTAGATA TTTTTTCATCAATAC TERM 1051 964357 - 964302 - R 100 -18.8 -3.53444 | gap 1, opp_overlap 964305 964306 964318, overlap 964303 964313 964318 GCACTTTGTTGGAAA CCCGGGATATATAAAAGAAGCTCCAAA GAA TTTGGAGCTTCTTTTATATATCC-GTT TATTAAAAACTTTAA TERM 1052 964356 - 964303 - R 100 -22.3 -2.71924 | gap 1, opp_overlap 964305 964306 964318, overlap 964302 964313 964318 CACTTTGTTGGAAAC CCGGGATATATAAAAGAAGCTCCAAA GAA TTTGGAGCTTCTTTTATATATCC-GT TTATTAAAAACTTTA TERM 1053 964305 - 964355 + r 100 -26 -4.17132 | opp_overlap 964303 964302 964313 964318, overlap 964306 964318 CTTTGTTGGAAACCC GGGATATATAAAAGAAGCTCCAAA GAA TTTGGAGCTTCTTTTATATATCCG TTTATTAAAAACTTT TERM 1054 964306 - 964354 + r 100 -29.5 -3.09556 | opp_overlap 964303 964302 964313 964318, overlap 964305 964318 TTTGTTGGAAACCCG GGATATATAAAAGAAGCTCCAAA GAA TTTGGAGCTTCTTTTATATATCC GTTTATTAAAAACTT TERM 1055 964347 - 964313 - R 100 -20.4 -2.89055 | opp_overlap 964306 964305 964318, overlap 964303 964302 964318 GAAACCCGGGATATA TAAAAGAAGCTCCAAA GAA TTTGGAGCTTCTTTTA TATATCCGTTTATTA TERM 1056 964318 - 964342 + r 100 -15.9 -4.62471 | opp_overlap 964313 964303 964302 964318, overlap 964306 964305 CCGGGATATATAAAA GAAGCTCCAAA GAA TTTGGAGCTTC TTTTATATATCCGTT TERM 1057 964342 - 964318 - R 100 -15.9 -4.60797 | opp_overlap 964318 964306 964305, overlap 964313 964303 964302 CCGGGATATATAAAA GAAGCTCCAAA GAA TTTGGAGCTTC TTTTATATATCCGTT Cthe_0798 965977 - 964391 - | lipolytic enzyme, G-D-S-L Cthe_0799 966229 - 966906 + | two component transcriptional regulator TERM 1058 966957 - 966977 + G 100 -5.5 -5.92337 | opp_overlap 966948 966960 CCAATATTGTCAGCA TAACAACCA TTC TGGTTATTA TTTTTTTTGGTATAT TERM 1059 967510 - 967498 - g 71 -6.3 -4.24342 | TCTCGCAGTAATAAA TTCCA ACC TGGAA ATAGTGATGGAAAAC Cthe_0800 966908 - 968119 + | periplasmic sensor signal transduction histidine kinase TERM 1060 968296 - 968277 - T 83 -8 -4.26188 | opp_overlap 968280, overlap 968294 TTTATAGATTCAAAA GAATTTCT GATA AGAAATTC TTACAAAAGAAAAAT TERM 1061 968386 - 968336 - T 91 -9.8 -4.3898 | opp_overlap 968340 968345, overlap 968345 ATGATGCGTATAAAA TATTACAGAGGGGTTCAGGAAACC AGA GTTTCCCTGAACCCCTTGATTATA CTATATACGCCCTTC TERM 1062 968340 - 968381 + T 85 -10.4 -3.49777 | opp_overlap 968336 968345, overlap 968345 TGCGTATAAAATATT ACAGAGGGGTTCA-GGAAAC CAGA GTTTCCCTGAACCCCT-TGA TTATACTATATACGC TERM 1063 968345 - 968377 + T 100 -15.8 -3.49182 | gap 1, opp_overlap 968336 968345, overlap 968340 ATAAAATATTACAGA GGGGTTCA-GGAAAC CAGA GTTTCCCTGAACCCC TTGATTATACTATAT TERM 1064 968377 - 968345 - T 100 -17.1 -3.0641 | opp_overlap 968345 968340, overlap 968336 ATAAAATATTACAGA GGGGTTCAGGAAACC AGA GTTTCCCTGAACCCC TTGATTATACTATAT Cthe_0801 969610 - 968387 - | transposase, mutator type TERM 1065 969121 - 969109 - G 73 -7.7 -3.90586 | opp_overlap 969109 969108 ATACTATCGGATAAA CCTCT CCC AGAGG CCTTTTCTGCCACTC TERM 1066 969714 - 969695 - R 79 -5 -5.29846 | opp_overlap 969695 969692 AATCTCAAATAAAAA CACAGG CAAAAAAT CCTGTG TTCTTTTTTAAAATT Cthe_0802 970243 - 969956 - | hypothetical protein TERM 1067 970497 - 970485 - H 74 -4.1 -5.19328 | overlap 970479 970486 ATTCTACAATAAAAA CGCTT TTC AAGCA AAACTGCCGCTTTAA Cthe_0803 970588 - 971544 + | RluA family pseudouridine synthase TERM 1068 971981 - 971966 - g 100 -7.6 -5.97575 | opp_overlap 971966 AAGCCATAAAAAAAA TTCTCC AATC GGAGAA TGTAATAACGGAGCC Cthe_0804 971752 - 972324 + | MerR family transcriptional regulator TERM 1069 972330 - 972312 - T 81 -3.1 -5.75945 | ACGCCTCAAAAAAAA GGTTTTC AAATA GCAAACC GAACAAAAGGGGCAT TERM 1070 972332 - 972362 + T 74 -6.9 -4.16101 | opp_overlap 972334 972339, overlap 972334 972339 TCAAATAGCAAACCG AACAAAAGGGGCA TTTGC TTCCCCTTTTGTC TTTATATGCTATTTT TERM 1071 972334 - 972360 + T 82 -9.5 -3.65604 | opp_overlap 972334 972339, overlap 972332 972339 AAATAGCAAACCGAA CAAAAGGGGCA TTTGC TTCCCCTTTTG TCTTTATATGCTATT TERM 1072 972360 - 972334 - T 78 -9.5 -3.33833 | opp_overlap 972332 972334 972339, overlap 972339 AAATAGCAAACCGAA CAAAAGGGGCA TTTGC TTCCCCTTTTG TCTTTATATGCTATT Cthe_0805 972781 - 972371 - | response regulator receiver protein Cthe_0806 975538 - 972830 - | PAS/PAC sensor hybrid histidine kinase Cthe_0807 976597 - 975554 - | response regulator receiver modulated CheB methylesterase TERM 1073 975701 - 975712 + g 73 -7.2 -4.11773 | overlap 975686 TCCTTTTTGTCTCAT GGCC AAAA GGCC TTTTGCACCATCTTT TERM 1074 975748 - 975758 + g 79 -6.8 -4.56775 | TGCCTGTAAGTATTA TGCC TAT GGCA TTTTTACCCGCAACT TERM 1075 976293 - 976275 - G 81 -7.4 -4.63218 | GGCTTTGTAACAAAA TCAACGGC ACC GGCGTTGA GAGCGTCAAACACAT Cthe_0808 977423 - 976605 - | MCP methyltransferase, CheR-type TERM 1076 977108 - 977119 + g 70 -3.6 -4.91109 | CACTCCATATCCTAA GGTC CAGC GGCC TTTTTATAGTGGCAG Cthe_0809 977940 - 977449 - | CheW protein Cthe_0810 980104 - 977957 - | CheA signal transduction histidine kinases Cthe_0811 980499 - 980146 - | response regulator receiver protein TERM 1077 980928 - 980878 - R 100 -18.8 -4.25401 | opp_overlap 980885 980889, overlap 980879 980893 TAAAGCCAACATAAA TGAAGCAGTAATAAATTCTAAGCT TAT AACTTAAAATTTATTACTGCTTCC ACACCTTATTACTGT TERM 1078 980927 - 980879 - R 100 -22.3 -3.14156 | opp_overlap 980885 980889, overlap 980878 980893 AAAGCCAACATAAAT GAAGCAGTAATAAATTCTAAGCT TAT AACTTAAAATTTATTACTGCTTC CACACCTTATTACTG Cthe_0812 981782 - 980973 - | response regulator receiver protein TERM 1079 982090 - 982060 - R 87 -8.5 -4.21275 | opp_overlap 982060 GCAATTTATGTAAAA TATGTGTATCCTC CTTAC GAAAATACACATA TTTTTATAATCTTAC TERM 1080 982060 - 982090 + r 70 -4.1 -4.98436 | opp_overlap 982060 GCAATTTATGTAAAA TATGTGTATCCTC CTTAC GAAAATACACATA TTTTTATAATCTTAC Cthe_0813 983486 - 982146 - | SpoIVB peptidase TERM 1081 982458 - 982473 + g 71 -6.1 -4.19123 | opp_overlap 982457 TATATTGGCAAGTAT GGTGG CAGGTC CCACC TTTATATCGTTTCTC TERM 1082 982554 - 982564 + g 71 -6.8 -3.98606 | opp_overlap 982546 982553, overlap 982546 CAAAGTACCATATAT GCCA TAA TGGC TGTTTTTCACTATTG TERM 1083 983708 - 983684 - R 82 -2.8 -5.92399 | opp_overlap 983692 CAACAAAATAAAAAA GCCCGGGA TTGTGATTC TCCCAAGC TTTTTATCTATAGAA Cthe_0814 985440 - 983728 - | DNA repair protein RecN Cthe_0815 985957 - 985496 - | ArgR family transcriptional regulator Cthe_0816 986828 - 985959 - | NAD(+) kinase TERM 1084 987766 - 987753 - g 71 -6.7 -4.08958 | opp_overlap 987752 ATCCTCAAATAATAA CAGCA ATCT TGCTG ATCTCTATTCACTGG TERM 1085 989202 - 989185 - g 95 -6.3 -5.60993 | CCTTCCAGAAAAAAA GCACTTC ACAA AAAGTGC GCCAAAATTTTGGAG Cthe_0817 987181 - 992661 + | diguanylate cyclase TERM 1086 992736 - 992718 - T 100 -16 -3.51329 | opp_overlap 992718, overlap 992705 992703 GAGGCTGAATTATAA CCACCGGC TCA GCCGGTGG TTTGCTCTAACCCTA TERM 1087 992718 - 992736 + T 100 -16 -3.83502 | opp_overlap 992705 992703 992718 GAGGCTGAATTATAA CCACCGGC TCA GCCGGTGG TTTGCTCTAACCCTA TERM 1088 992823 - 992834 + T 78 -5.8 -4.93333 | opp_overlap 992823 ATTCTTCTCAAGCCA CCAC TAAA GTGG TTTTATCTTTTGCTT Cthe_0818 993808 - 993134 - | hypothetical protein Cthe_0819 994656 - 993793 - | ABC transporter related protein TERM 1089 993828 - 993861 + g 70 -2.9 -5.07486 | AATAACCTTCCTCCA CCGTTGGTTGAACCG CCTC CGCATCTTCCGACGG TTTTTCTTCGGAATA Cthe_0820 996709 - 994697 - | hypothetical protein TERM 1090 995316 - 995332 + g 76 -9.3 -3.76952 | opp_overlap 995312 995311 CCCTGTATAACTGCA GGCCCGG TTG CCTGGCC TTTAAATTCCGTACC TERM 1091 996766 - 996724 - R 100 -14.2 -3.33162 | opp_overlap 996734, overlap 996727 996734 TATTGCACCTCACAA GCAGGCATAAGACCCAGACC ATT GGTCCAGGTCTTATGCCAAA TCATTATGTATAGTT TERM 1092 996763 - 996727 - R 100 -22.5 -2.83822 | opp_overlap 996734, overlap 996724 996734 TGCACCTCACAAGCA GGCATAAGACCCAGACC ATT GGTCCAGGTCTTATGCC AAATCATTATGTATA TERM 1093 996756 - 996734 - R 91 -12 -3.40309 | opp_overlap 996734, overlap 996727 996724 CACAAGCAGGCATAA GACCCAGACC ATT GGTCCAGGTC TTATGCCAAATCATT TERM 1094 997156 - 997171 + r 72 -4.8 -4.84761 | opp_overlap 997158, overlap 997156 997159 TAATATTAAGGGAAG GATTTT TCTG AAAATC TTTTTCTGAAAATCT TERM 1095 997156 - 997185 + r 73 -4.5 -4.97312 | gap 1, opp_overlap 997158, overlap 997156 997159 997178 TAATATTAAGGGAAG GATTTTTCTGAAAA TCT TTTTCTGAAAA-TC TTTTTCATTGCTTTT TERM 1096 997159 - 997183 + r 74 -7.3 -4.07912 | opp_overlap 997158, overlap 997156 997156 997178 TATTAAGGGAAGGAT TTTTCTGAAAA TCT TTTTCTGAAAA TCTTTTTCATTGCTT TERM 1097 997431 - 997445 + r 70 -4.2 -5.03994 | CTTTTTTATGGTTTT GCTTGT TCC ACCAGC TTTTTGTATATAAAA TERM 1098 997564 - 997587 + r 83 -8.4 -4.17023 | opp_overlap 997569, overlap 997569 ATAAAATTTATTCTG TTAAAGATTT TCTC AAATCTTTAA TTTTAAAATGATTAA Cthe_0821 999336 - 997660 - | coagulation factor 5/8 type-like protein TERM 1099 999630 - 999651 + r 80 -5.9 -4.96848 | opp_overlap 999629 CACTTTTGCAAAATT TTCCCCA GGCACCGG TGGGGAA TTTTTATGTAAACCC Cthe_0822 1000413 - 999688 - | IstB-like ATP-binding protein Cthe_0823 1001921 - 1000407 - | hypothetical protein TERM 1100 1001008 - 1001028 + g 77 -10.4 -3.4376 | overlap 1001019 1001021 TCAAAAGTTGTCTTG GGCAGCTC CAGCA GGGCTGCC TTATCATCCCTGTAT TERM 1101 1002273 - 1002256 - H 82 -2.8 -5.94743 | opp_overlap 1002256 TAAAAAAAATAAAAA TATACA CCGCCC TGTATA AATTTTGCTTTATTT TERM 1102 1003986 - 1004005 + G 74 -5.1 -4.66163 | CGAAGTCGGACGTTC TTCCAAA AACGAG TTTGGAA TTTTTGACTACGACT Cthe_0824 1002382 - 1004157 + | copper amine oxidase-like protein TERM 1103 1004201 - 1004231 + T 100 -11.8 -4.14392 | opp_overlap 1004201 1004203, overlap 1004201 1004203 CGGAATTGATAAAAA CAGCCCTGCGGCAG TTT TTGCCACAGGGCTC TTTTACCGATTAAAC TERM 1104 1004231 - 1004201 - T 100 -13.3 -4.91712 | opp_overlap 1004201 1004201 1004203, overlap 1004203 CGGAATTGATAAAAA CAGCCCTGCGGCA GTTTT TGCCACAGGGCTC TTTTACCGATTAAAC TERM 1105 1004229 - 1004203 - T 100 -15.9 -4.07789 | opp_overlap 1004201 1004201 1004203, overlap 1004201 GAATTGATAAAAACA GCCCTGCGGCA GTTTT TGCCACAGGGC TCTTTTACCGATTAA TERM 1106 1004203 - 1004229 + T 100 -14.4 -3.67 | opp_overlap 1004203 1004201, overlap 1004201 1004201 GAATTGATAAAAACA GCCCTGCGGCAG TTT TTGCCACAGGGC TCTTTTACCGATTAA Cthe_0825 1006232 - 1004283 - | glycoside hydrolase family protein TERM 1107 1005789 - 1005799 + g 71 -6.8 -4.08945 | CAGCAAATACATTCC CAGC ATT GCTG TTTTAAAAGCATCCT Cthe_0826 1007469 - 1006684 - | hypothetical protein Cthe_0827 1008334 - 1007522 - | hemolysin A Cthe_0828 1010280 - 1008397 - | 1-deoxy-D-xylulose-5-phosphate synthase TERM 1108 1009144 - 1009156 + g 70 -3.3 -5.00616 | ATAAAGAGCTATGAC CGGAA TCA TCCCG TTTTTTGCAAGCCCG Cthe_0829 1011039 - 1010311 - | hypothetical protein Cthe_0830 1012378 - 1011932 - | acid phosphatase/vanadium-dependent haloperoxidase related TERM 1109 1012254 - 1012267 + g 71 -3.8 -4.86731 | opp_overlap 1012254 CCTGAACCGATAAAC CTGG TAAAAT CCAG TTTTCTTTCAACAAC Cthe_0831 1013303 - 1012416 - | farnesyl-diphosphate synthase TERM 1110 1012515 - 1012527 + g 74 -6.3 -4.32046 | CTTTTTCGTGACATC GGAAA GTA TTTCC TTTGATTTTTCCAAA Cthe_0832 1013535 - 1013293 - | exodeoxyribonuclease VII small subunit Cthe_0833 1014804 - 1013569 - | exodeoxyribonuclease VII large subunit TERM 1111 1013664 - 1013682 + g 76 -4.6 -5.08088 | opp_overlap 1013668, overlap 1013665 CATCCACATCGTTAA CGGATTTT ACA AAAATCCC TTTTTCTTCCGACTT TERM 1112 1013665 - 1013681 + g 70 -8.1 -3.63768 | opp_overlap 1013668, overlap 1013664 ATCCACATCGTTAAC GGATTTT ACA AAAATCC CTTTTTCTTCCGACT Cthe_0834 1015288 - 1014851 - | NusB antitermination factor Cthe_0835 1015597 - 1015343 - | hypothetical protein Cthe_0836 1016138 - 1015590 - | hypothetical protein Cthe_0837 1016746 - 1016342 - | hypothetical protein Cthe_0838 1017494 - 1016847 - | hypothetical protein Cthe_0839 1018224 - 1017601 - | stage III sporulation protein AG TERM 1113 1017830 - 1017842 + g 74 -9.1 -3.61182 | overlap 1017827 TGGGCAATCCTTCGT GTGCC TCC GGCAC TGTCTTTTTCATTGG TERM 1114 1018033 - 1018056 + g 74 -5.3 -4.79053 | AACTTCCCGGGTATT GTCCAAAGC TTCACT GCTTTTGAC TTTGTTTTCATCTTT Cthe_0840 1018867 - 1018235 - | hypothetical protein Cthe_0841 1020119 - 1018890 - | mutants block sporulation after engulfment Cthe_0842 1020573 - 1020184 - | stage III sporulation protein AD Cthe_0843 1020793 - 1020599 - | stage III sporulation AC Cthe_0844 1021417 - 1020896 - | stage III sporulation protein spoIIIAB TERM 1115 1021220 - 1021207 - G 76 -2.3 -5.40072 | TGCCTTTGAAAAAAA CTGCA ACAC TGCTG TCATCATACATGTAT TERM 1116 1021306 - 1021330 + g 83 -9.9 -3.90048 | opp_overlap 1021294 1021304 1021302, overlap 1021304 1021328 ACATCTGAAGATATC CCTGCAGAGCT CTC AGCTCCGCCGG TCTTTTTGAGCACCG Cthe_0845 1022430 - 1021420 - | stage III sporulation protein spoIIIAA TERM 1117 1022568 - 1022602 + r 100 -14.5 -4.21811 | opp_overlap 1022568, overlap 1022571 TAACGGTCAAAAAAA GAATGGACATGGAAA TACAC TTTCCACGTCCATTC TTTATATCTTAAATA TERM 1118 1022602 - 1022568 - R 100 -16.7 -5.43866 | opp_overlap 1022568 1022571 TAACGGTCAAAAAAA GAATGGACATGGAAA TACAC TTTCCACGTCCATTC TTTATATCTTAAATA TERM 1119 1022571 - 1022599 + r 95 -10.4 -4.21954 | opp_overlap 1022568, overlap 1022568 CGGTCAAAAAAAGAA TGGACATGGAAA TACAC TTTCCACGTCCA TTCTTTATATCTTAA Cthe_0846 1023044 - 1022634 - | hypothetical protein Cthe_0847 1023733 - 1023176 - | translation elongation factor P (EF-P) TERM 1120 1023584 - 1023605 + g 81 -6.7 -4.82855 | GTTAAAAGTTTTCTC TATAGTAGC ACCT GTTACTATA TTTTTCAGTTTAGTC Cthe_0848 1025028 - 1023949 - | peptidase M24 TERM 1121 1025099 - 1025075 - R 82 -7.9 -4.42062 | opp_overlap 1025075 1025093 1025096 CAGTTTTTAAATAAA CATGTCATGTC AAC AACATGTCATG TTAATAATATGTCAT Cthe_0849 1025539 - 1025111 - | 3-dehydroquinate dehydratase TERM 1122 1026419 - 1026453 + r 89 -10.3 -3.82824 | opp_overlap 1026419 1026449 ATCACCCATAAAAAA TATTATGCTTCAATC GTAAA GATTAAAGCATAATA TTATTATAACTAATG TERM 1123 1026453 - 1026419 - R 100 -12.5 -5.28778 | opp_overlap 1026419, overlap 1026449 ATCACCCATAAAAAA TATTATGCTTCAATC GTAAA GATTAAAGCATAATA TTATTATAACTAATG Cthe_0851 1026787 - 1026521 - | hypothetical protein Cthe_0852 1027813 - 1026968 - | type 4 prepilin peptidase 1. Aspartic peptidase. MEROPS family A24A Cthe_0853 1029584 - 1027899 - | type II secretion system protein E TERM 1124 1028946 - 1028956 + g 70 -5.4 -4.4831 | ATGCATTTGTCCGTC GGTT CTA AACC TTATTTTTAATGCAT TERM 1125 1029029 - 1029085 + g 71 -6.7 -4.0274 | opp_overlap 1029041, overlap 1029041 TCGCCTGCTCTATTA TGGAATTTAAAAGCATTGAGGCAGA TTCATTT TCCGCCTCAACGCTTTCAAGCTCTA TTGTTTCCTCATCAA TERM 1126 1029073 - 1029041 - G 95 -12.1 -4.28774 | opp_overlap 1029029 1029041 TTATGGAATTTAAAA GCATTGAGGCAGA TTCATTT TCCGCCTCAACGC TTTCAAGCTCTATTG TERM 1127 1029164 - 1029174 + g 79 -3.2 -5.4505 | GTGTTCTGTAATATT TGTC AAT GGCA TTTTTTATTGACGAC Cthe_0854 1030576 - 1029680 - | shikimate dehydrogenase Cthe_0855 1031124 - 1030621 - | HAD family phosphatase TERM 1128 1032037 - 1032012 - g 79 -9.7 -3.66378 | opp_overlap 1032014 CACAGGTTATGCAAA GACTCCCGGCA ACTA TGCCGCAAGTC TCATAGCGCAGGTTA TERM 1129 1032078 - 1032064 - g 80 -10 -3.65514 | opp_overlap 1032063, overlap 1032060 GTTAAAGCAAAGGAA CTGGGT TAC ACCCAG GTACTCTGGCTTGAC Cthe_0856 1031425 - 1032495 + | branched chain amino acid aminotransferase TERM 1130 1032536 - 1032517 - f 91 -12.2 -3.53224 | opp_overlap 1032517 TATTGTTTTTGGAAA GCAGGTGA TTAC TCACCTGC TTTTTTATACGTTTT TERM 1131 1032517 - 1032536 + F 100 -12.2 -5.35222 | opp_overlap 1032517 TATTGTTTTTGGAAA GCAGGTGA TTAC TCACCTGC TTTTTTATACGTTTT TERM 1132 1032592 - 1032580 - f 75 -4.9 -4.97312 | AAAATTAACCAAAAA TATCA TTG TGATA GATGACTGTTATAGT Cthe_0857 1032785 - 1033276 + | hypothetical protein Cthe_0858 1033379 - 1034368 + | hypothetical protein Cthe_0859 1034423 - 1034968 + | hypothetical protein TERM 1133 1035021 - 1035055 + T 80 -7.2 -4.58283 | opp_overlap 1035024, overlap 1035024 AGTGCGTAAAATACA AAAGCAAATCCGGG TGAAATT CCCGGATTTACTTG TTTTTGCAACACTTG TERM 1134 1035052 - 1035024 - T 100 -11.1 -4.89567 | opp_overlap 1035024 1035021 GCGTAAAATACAAAA GCAAATCCGGG TGAAATT CCCGGATTTAC TTGTTTTTGCAACAC TERM 1135 1035024 - 1035052 + T 89 -8.9 -4.40561 | opp_overlap 1035024, overlap 1035021 GCGTAAAATACAAAA GCAAATCCGGG TGAAATT CCCGGATTTAC TTGTTTTTGCAACAC Cthe_0860 1035705 - 1035112 - | rubrerythrin TERM 1136 1036018 - 1036006 - g 74 -4.9 -4.69028 | GGTCAAAAAAAAATA TTTTC AAA GAAAA AGAATTTAACTTTTA TERM 1137 1036779 - 1036765 - g 82 -4.2 -5.47218 | opp_overlap 1036767, overlap 1036767 1036774 CTTGACGGAAAAAAA GCCGAA GGA TTCGTC CGTTACAGGCAAAGC Cthe_0861 1035988 - 1037124 + | cell envelope-related transcriptional attenuator TERM 1138 1037351 - 1037340 - g 73 -2.2 -5.27477 | ATTTGAATCAAAAAA TACC AACA GGCA TAATCACAAAATAAT Cthe_0862 1037299 - 1037619 + | hypothetical protein TERM 1139 1037750 - 1037705 - f 70 -7.1 -3.64812 | opp_overlap 1037697 1037704 1037749, overlap 1037704 TTTTATGTAAAAAAT CGTTTTTTGTTAATGTCCAAT GAAT ATTGAGCAATAACAAAAAAGG CGTTTCATTATTTTG TERM 1140 1037749 - 1037775 + F 72 -3.6 -5.24416 | opp_overlap 1037705 1037704, overlap 1037704 AGCAATAACAAAAAA GGCGTTTCATTA TTT TGTTGATGCGCC TTTTTCTTATAATTC TERM 1141 1038496 - 1038478 - g 76 -3.1 -5.28176 | CTGATTGACAAAAAA CTTCACG ATCAA CGCAAAG ACCTCATCTACACCG Cthe_0863 1037851 - 1039968 + | L-glutamine synthetase TERM 1142 1040064 - 1040040 - T 100 -7.8 -5.73672 | opp_overlap 1040041, overlap 1040041 AAACAATCAAAAAAA GGCCCTCCTC TCAAT AAGGAGGGCT TTATCAATGATTTCA TERM 1143 1040063 - 1040041 - T 100 -11.3 -4.00543 | opp_overlap 1040041, overlap 1040040 AACAATCAAAAAAAG GCCCTCCTC TCAAT AAGGAGGGC TTTATCAATGATTTC TERM 1144 1040041 - 1040063 + T 91 -10.6 -3.96224 | opp_overlap 1040041 1040040 AACAATCAAAAAAAG GCCCTCCT CTCAATA AGGAGGGC TTTATCAATGATTTC Cthe_0864 1040713 - 1040174 - | 2-oxoglutarate ferredoxin oxidoreductase, gamma subunit Cthe_0865 1041466 - 1040720 - | 3-methyl-2-oxobutanoate dehydrogenase (ferredoxin) TERM 1145 1041314 - 1041338 + g 71 -7.1 -3.94746 | opp_overlap 1041319 1041321, overlap 1041316 GTTGTTGTAGGCACA GCCAACAGGTG AAA CACCTATTGTC TTTCCTTCAATATCA TERM 1146 1041316 - 1041336 + g 72 -8.3 -3.56006 | opp_overlap 1041319 1041321, overlap 1041314 TGTTGTAGGCACAGC CAACAGGTG AAA CACCTATTG TCTTTCCTTCAATAT Cthe_0866 1042557 - 1041517 - | pyruvate flavodoxin/ferredoxin oxidoreductase-like protein Cthe_0867 1042832 - 1042626 - | 2-oxoglutarate ferredoxin oxidoreductase, delta subunit Cthe_0868 1043555 - 1042845 - | type IV pilus assembly PilZ Cthe_0869 1044237 - 1043569 - | hypothetical protein TERM 1147 1044427 - 1044410 - R 100 -10.5 -5.06414 | overlap 1044411 CTGTTTCAATAAAAA CCGGGGG TATT CCCCCGA CATCATTATAGTCTT TERM 1148 1044426 - 1044411 - R 95 -11.8 -3.63367 | overlap 1044410 TGTTTCAATAAAAAC CGGGGG TATT CCCCCG ACATCATTATAGTCT Cthe_0870 1045086 - 1044499 - | NADPH-dependent FMN reductase TERM 1149 1044614 - 1044647 + g 71 -9.6 -2.75064 | overlap 1044617 ACACCATGGTGGCCG CAATCGTCGCCGAC ATATCC GTCGCCGACAATTG TCATTCCGTGGACAA Cthe_0871 1045838 - 1045182 - | phosphoribosylanthranilate isomerase TERM 1150 1045481 - 1045494 + g 72 -3.1 -5.00884 | ACTCAGAAATAATTT CAAGG GATT CTTTG TTTTTTACCCGAACT Cthe_0872 1046624 - 1045842 - | indole-3-glycerol phosphate synthase Cthe_0873 1047727 - 1046690 - | anthranilate phosphoribosyltransferase TERM 1151 1047627 - 1047612 - G 74 -6.1 -4.37658 | opp_overlap 1047611 AACGCCGTTATAAAA CTGCC TATCTG GGCAG GTGTTGCCTTGCCCT TERM 1152 1047795 - 1047773 - R 70 -6.4 -4.17316 | ATTCTTTTAAAACAA GTGCTTAAAA AAC TTTTAAGTAC TGCGACTCAAATCGC Cthe_0874 1048407 - 1047802 - | anthranilate synthase, component II Cthe_0875 1049888 - 1048404 - | anthranilate synthase, component I TERM 1153 1049700 - 1049688 - G 71 -4.8 -4.51812 | TTCCACAACAAGAAA CGGA TTTTT TCCG ATGATGGAGTACCGG TERM 1154 1049965 - 1049944 - H 100 -11.6 -4.82667 | GGACCATACTAAAAA CGCCGGAT GGAAGA ATCCGGCG ATATGGCGCAAATAC Cthe_0876 1050392 - 1051684 + | glycosyl transferase family protein TERM 1155 1052082 - 1052093 + G 74 -4.4 -4.8667 | AGCAAAGGCGAAGGT CTTG GCAA CAAG TTTTTGTCCCATATA Cthe_0877 1051833 - 1052927 + | translation-associated GTPase TERM 1156 1053030 - 1052981 - T 95 -11.7 -3.57263 | gap 1, overlap 1052969 1052968 1052986 1052991 ATCTTCATTCTCAAA CAGAATAAAAGCGCATACAAACTG TAA CAAAT-GCATGCGCTTTTTTTCTG TCAAAATTGTAGTAA TERM 1157 1053020 - 1052991 - T 73 -4.3 -4.95302 | gap 1, overlap 1052986 1052981 TCAAACAGAATAAAA GCGCATACAAACTG TAA CAAAT-GCATGCGC TTTTTTTCTGTCAAA Cthe_0878 1053633 - 1053055 - | CheW protein TERM 1158 1053929 - 1053913 - H 78 -9.5 -3.2964 | AAATTTTGTGCACAA CTGTTGA AAA TCAACAG GTCGGAAAACTATTT TERM 1159 1054936 - 1054926 - g 74 -4.6 -4.90013 | opp_overlap 1054926 TAACTGAACGAAAAA CCCG CTA CGAG TTATTGTTTCTTTTG Cthe_0879 1054277 - 1055347 + | integrase catalytic subunit TERM 1160 1055771 - 1055758 - f 79 -8.1 -4.07568 | GCTGTTGGCTGAAAA GCGGT TCAC ACCGC TAAAGTAGGCTTAAC TERM 1161 1055935 - 1055895 - f 78 -9.8 -3.29144 | opp_overlap 1055886 1055899, overlap 1055897 1055899 GTACCGCGTGGAGAA TACACTCCTCGTCCCTTA AAAAA TAAGGGATGAGGAGTTTT TTATTTGACTTAAAA TERM 1162 1055933 - 1055897 - f 90 -12.4 -3.21395 | opp_overlap 1055886 1055899, overlap 1055895 1055899 ACCGCGTGGAGAATA CACTCCTCGTCCCTTA AAAAA TAAGGGATGAGGAGTT TTTTATTTGACTTAA TERM 1163 1055931 - 1055899 - f 100 -15 -3.17146 | opp_overlap 1055886 1055899, overlap 1055897 1055895 CGCGTGGAGAATACA CTCCTCGTCCCTTA AAAAA TAAGGGATGAGGAG TTTTTTATTTGACTT TERM 1164 1055899 - 1055931 + F 100 -17.2 -5.67283 | opp_overlap 1055897 1055895 1055899, overlap 1055886 CGCGTGGAGAATACA CTCCTCGTCCCTTA AAAAA TAAGGGATGAGGAG TTTTTTATTTGACTT Cthe_0880 1056027 - 1057043 + | 3-deoxy-D-arabinoheptulosonate-7-phosphate synthase TERM 1165 1057159 - 1057127 - T 100 -7.8 -5.52347 | opp_overlap 1057125 1057127 AACAAAATCAAAAAA GCTCGTAAGACA AAAGTTAGA TGTCTTTCGAGC TAATTTATTGTCTTT Cthe_0881 1058355 - 1057225 - | diguanylate cyclase Cthe_0882 1059343 - 1058453 - | hypothetical protein Cthe_0883 1059594 - 1060013 + | flagellar protein Cthe_0884 1060694 - 1060128 - | lytic transglycosylase, catalytic Cthe_0885 1061319 - 1060732 - | dephospho-CoA kinase TERM 1166 1060977 - 1061006 + g 84 -2.1 -5.82388 | overlap 1060978 1060986 CATGTTTTATCGGAA TGGGAGCATCTAT AACA ATAGTTTTTCCCG TTTTTTTTAGAATTT Cthe_0886 1064079 - 1061395 - | DNA polymerase I TERM 1167 1061734 - 1061745 + g 86 -4.4 -5.48213 | TCTCATGAACATGGT GGTT ACAA AACC TTTTTCTTTTCCCTC TERM 1168 1063050 - 1063076 + g 80 -8 -4.42653 | overlap 1063051 GCGAAATTGCAATGG CGGCAAGCTTTT GAG AAAAGCTGCCCG TTTTGTCAATCAAAT Cthe_0887 1064392 - 1064180 - | hypothetical protein TERM 1169 1064506 - 1064487 - R 72 -7.2 -3.82656 | overlap 1064485 TGCAAAATATAAACA GTGTATGC AACA ACATACAC CCTAAATAATTGTAC TERM 1170 1064553 - 1064530 - R 100 -8 -5.37043 | opp_overlap 1064530 1064526 ATTGTACACAAAAAA GGGACCGCAG TAAA CAGCTGTCCC TTAATTTTTTATAAT TERM 1171 1064530 - 1064553 + r 79 -8 -4.0014 | opp_overlap 1064530, overlap 1064526 ATTGTACACAAAAAA GGGACCGCAG TAAA CAGCTGTCCC TTAATTTTTTATAAT Cthe_0888 1065318 - 1064617 - | type IV pilus assembly PilZ Cthe_0889 1066437 - 1065448 - | putative transmembrane anti-sigma factor Cthe_0890 1067120 - 1066458 - | ECF subfamily RNA polymerase sigma-24 factor TERM 1172 1067345 - 1067317 - g 76 -11.1 -2.51471 | overlap 1067304 1067316 1067326 TACAATTTTAGTAAT TGATGACAATGTC TTT GACAATGCCATCA TCAAAAATTATCTCT Cthe_0891 1067294 - 1067737 + | response regulator receiver protein TERM 1173 1067772 - 1067806 + T 86 -11.6 -2.94299 | opp_overlap 1067762 1067779, overlap 1067779 CAATATTTTACGCAA GCAAAAACACCAGC CATGTAA GCTGGTGTTTTTGA TAATTTACAATATTG TERM 1174 1067799 - 1067779 - T 93 -9 -4.88407 | opp_overlap 1067772 1067779 TTACGCAAGCAAAAA CACCAGCC ATGTA AGCTGGTG TTTTTGATAATTTAC TERM 1175 1067779 - 1067799 + T 90 -8.3 -4.84363 | opp_overlap 1067779, overlap 1067772 TTACGCAAGCAAAAA CACCAGC CATGTAA GCTGGTG TTTTTGATAATTTAC TERM 1176 1067986 - 1068004 + T 70 -7.4 -3.57561 | AGTCGCCATACCGCT GGTGAGCT CTT ACCTCACC TTTCCACCCTTACCA Cthe_0892 1069349 - 1068243 - | hypothetical protein Cthe_0893 1070067 - 1069363 - | hypothetical protein TERM 1177 1070352 - 1070385 + r 89 -12.1 -3.14468 | gap 1, opp_overlap 1070352, overlap 1070357 TTGGAGACAAAAAAA TAAAATCAGG-AGTAT TTC ATACTTCCTGATTTTA TTCCCTATGGTGGGC TERM 1178 1070385 - 1070352 - R 100 -12.1 -5.71712 | gap 1, opp_overlap 1070352 1070357 TTGGAGACAAAAAAA TAAAATCAGG-AGTAT TTC ATACTTCCTGATTTTA TTCCCTATGGTGGGC TERM 1179 1070357 - 1070380 + r 82 -7.6 -4.70169 | gap 1, opp_overlap 1070352, overlap 1070352 GACAAAAAAATAAAA TCAGG-AGTAT TTC ATACTTCCTGA TTTTATTCCCTATGG Cthe_0894 1070920 - 1070702 - | hypothetical protein TERM 1180 1071006 - 1071027 + r 76 -6.1 -4.65933 | opp_overlap 1071006 1071017, overlap 1071017 ATCGCATTGAAATCA TTTTAAAAT AAGG ATTTTAAAA TTTATTTTAAAAATC TERM 1181 1071035 - 1071054 + r 85 -6.6 -5.09685 | opp_overlap 1071017, overlap 1071017 TTTTAAAATTTATTT TAAAAATC CCTT GATTTTTA TTTTTATATCTATTA TERM 1182 1071103 - 1071139 + r 100 -6.6 -5.64304 | overlap 1071105 AATTATACTCCCCTA GTTCCTGCAAATATGC GTAGA GCAAATTTGCAGGATG TTTTTTATTATCTTC TERM 1183 1071105 - 1071137 + r 100 -13.6 -4.42868 | overlap 1071103 TTATACTCCCCTAGT TCCTGCAAATATGC GTAGA GCAAATTTGCAGGA TGTTTTTTATTATCT TERM 1184 1071200 - 1071177 - R 80 -7.4 -4.564 | AACGCCAAACTAAAA GAGCCAGG CAGCAAAT CCCGGCTC TTAAAATCAATCCAA Cthe_0895 1072283 - 1071207 - | RNA polymerase sigma factor RpoD TERM 1185 1071867 - 1071848 - G 73 -2.1 -5.24551 | TCAAATCAAGAAAAA GCATGCC CCTTCC GACATAC CTCTTGGCTATACTT TERM 1186 1072205 - 1072220 + g 76 -3.2 -5.34381 | CATCCATAATTTCCT GGTATG TCAG CATTCC TTTTTGTTTGCCTTT dnaG 1074135 - 1072333 - | DNA primase Cthe_0897 1075489 - 1074494 - | deoxyguanosinetriphosphate triphosphohydrolase-like protein Cthe_0898 1076673 - 1075636 - | metal dependent phosphohydrolase Cthe_0899 1077050 - 1077322 + | hypothetical protein TERM 1187 1077361 - 1077317 - T 100 -12.4 -4.85599 | opp_overlap 1077317 TTTATTGCAGAAAAA GGTTAAGAACTGAACAATCC AAAAA GGATTCCCCAATTCTTAACC TTCATATTTCCCCAT Cthe_0900 1077743 - 1077363 - | aspartate 1-decarboxylase Cthe_0901 1078594 - 1077749 - | pantothenate synthetase TERM 1188 1078285 - 1078302 + g 85 -8.5 -4.41348 | CATTTACATAAGTCT TGTATCC GTCG GGATACA TTTCTTTAACCGACG Cthe_0902 1079506 - 1078655 - | 3-methyl-2-oxobutanoate hydroxymethyltransferase TERM 1189 1078949 - 1078932 - G 77 -4.8 -4.86731 | CTCTTTGAAATAAAA GCCGCA AGTTTA TACGGC ACACACTCCAAAACC TERM 1190 1079547 - 1079566 + r 83 -10.8 -2.84801 | opp_overlap 1079547, overlap 1079544 1079542 TCCAAAATCAAAAAA GTCAATCC GACA GGATTGAC TGATATTTGACAATA TERM 1191 1079566 - 1079547 - R 100 -10.8 -5.46698 | opp_overlap 1079547 1079544 1079542 TCCAAAATCAAAAAA GTCAATCC GACA GGATTGAC TGATATTTGACAATA TERM 1192 1079831 - 1079804 - R 100 -7.8 -5.59962 | opp_overlap 1079804 TAAAATAAATAAAAA TTGGACAGAAGC CTTA ACTTCCATCCAA TTTGTTTACTAATAA Cthe_0903 1080837 - 1079881 - | protein translocase subunit secF Cthe_0904 1082167 - 1080830 - | protein-export membrane protein SecD TERM 1193 1082081 - 1082070 - G 75 -5.8 -4.77165 | opp_overlap 1082070 1082069, overlap 1082029 TTGGGTATAACAAAA TCCG TATT CGGA ATTTTTAATCCAGTA Cthe_0905 1082995 - 1082330 - | metal dependent phosphohydrolase Cthe_0906 1084378 - 1083026 - | radical SAM family protein TERM 1194 1084223 - 1084234 + g 74 -4.4 -4.94262 | TTCATCTGCATTGTA CTTG TGAG CAAG TTTGTTTTTAATCTC TERM 1195 1084469 - 1084438 - R 100 -11.1 -5.11937 | opp_overlap 1084438 AATAACGCTAAAAAA GTGAAAAGCGAAA TACTTG TTTCACTTTTCAC TTTGTCAATTGTAAT TERM 1196 1084438 - 1084469 + r 86 -9.6 -4.00468 | opp_overlap 1084438 AATAACGCTAAAAAA GTGAAAAGCGAAAT ACTT GTTTCACTTTTCAC TTTGTCAATTGTAAT Cthe_0907 1084669 - 1084529 - | hypothetical protein Cthe_0908 1085678 - 1084767 - | ribosomal large subunit pseudouridine synthase D Cthe_0909 1086259 - 1085804 - | signal peptidase II Cthe_0910 1088007 - 1086340 - | extracellular solute-binding protein TERM 1197 1087369 - 1087390 + g 85 -8.7 -4.41633 | overlap 1087365 TTCCGCGAACTTATA CGGTCCGGT ACCT ATCGGACTG TTGTTTTTGGGAGTG Cthe_0911 1088962 - 1088123 - | hypothetical protein TERM 1198 1089178 - 1089202 + r 70 -4.3 -4.74598 | ACATTTTATCTCTTA GTACAGCCT TTTATTC AGGTTGTGC TTTCTTTTCAATTTC Cthe_0912 1092518 - 1089285 - | glycoside hydrolase family protein TERM 1199 1090073 - 1090100 + g 70 -9.8 -2.60496 | opp_overlap 1090072 1090069, overlap 1090072 1090070 1090075 TTAAATAAGAATCAG GAGCCGGCCG ATATTGCA CGGCCGACTC ATATTTAAAAGAAGA TERM 1200 1091536 - 1091560 + g 79 -10.1 -3.53563 | opp_overlap 1091534 1091536 1091542, overlap 1091542 TCATAGGCATAAAGA TTCAAAGACGG ATA CTGTCTTTGGA TTTCAGCAAACATAT Cthe_0913 1092828 - 1094048 + | transposase IS116/IS110/IS902 TERM 1201 1094741 - 1094731 - g 74 -4 -5.07652 | CCTTGTAAAAGAAAA TCAA AAA TTGA AAGAAGAGCTGGCAA TERM 1202 1094807 - 1094787 - g 78 -2.6 -5.46698 | TGGAAAAGGAAAAAA TTGAGAAC GAAAA ACTCTCAA AAGAAAACAAAAATT TERM 1203 1095400 - 1095379 - g 75 -5.8 -4.71482 | ATTAAACCGCAAAAA GCCCAACG TTTTCT CACTGGGC ATAACCAGCGGAGGT Cthe_0914 1094627 - 1097179 + | hypothetical protein TERM 1204 1097847 - 1097835 - g 75 -2.7 -5.35224 | GTCATAAAAATAAAA GATTT GAA AAACC TGAAAGTCACCGGCA Cthe_0915 1097157 - 1098359 + | hypothetical protein Cthe_0916 1098451 - 1099335 + | hypothetical protein TERM 1205 1099361 - 1099389 + T 79 -4.7 -5.14163 | gap 2, opp_overlap 1099361, overlap 1099343 TCCGGATTTTAAAAA GCGGG--AAGCTT TTATT AAGCTTTTCCCGC TTTTTATTACTCCAT Cthe_0917 1101200 - 1099458 - | glutaminyl-tRNA synthetase TERM 1206 1101574 - 1101540 - R 100 -10.9 -5.03201 | AACAATAAGCAAAAA GGGGCTATTTTAAAA ATCTA TTTTGAAACAGCCCC TCTAAAAAATCATTA Cthe_0918 1105253 - 1101624 - | cellulosome enzyme, dockerin type I TERM 1207 1103901 - 1103913 + g 70 -3.3 -4.88067 | overlap 1103902 GGTTACTTTCTCAAT CTCCG GAA CGGAC TTTTTATAAATAACT TERM 1208 1104034 - 1104020 - G 73 -8.6 -3.64703 | CTTTGCCCAGCGAAA CTTGGA AAT TCCAAG CACCGGTCGAATTAG TERM 1209 1104765 - 1104789 + g 79 -5.8 -4.8543 | overlap 1104763 1104762 TATTTTACCCTCTCT GTTCATCGAA CAGCT TTCTATGAAC TTTTTGTCAGAGTTA TERM 1210 1105408 - 1105431 + r 82 -11 -2.53876 | opp_overlap 1105427 TATATCCTTTTGCTT TCCGGTCTGT TATG ACAGACCGGC TGCCTTCCGGTGAGG TERM 1211 1105455 - 1105469 + r 86 -11.4 -2.89 | overlap 1105453 GGTGAGGACGGGGTT TGGGGC GGA GCCCCA TAATTCTATACAACT Cthe_0919 1106311 - 1105475 - | integrase catalytic subunit Cthe_0920 1106627 - 1106334 - | transposase IS3/IS911 Cthe_0921 1107876 - 1108064 + | hypothetical protein TERM 1212 1108134 - 1108092 - T 88 -8.6 -4.49352 | opp_overlap 1108096 1108097 1108099, overlap 1108099 ATACCAAAATATAAA TATATAATAGACAGGGAAAT TCC ATCCCCCTGTCTATCCTTTA TATTCATATCCACAA TERM 1213 1108099 - 1108127 + T 74 -8.9 -3.12253 | opp_overlap 1108092 1108099, overlap 1108097 1108096 AATATAAATATATAA TAGACAGGGAAAT TCC ATCCCCCTGTCTA TCCTTTATATTCATA TERM 1214 1108127 - 1108099 - T 100 -13.3 -3.82789 | opp_overlap 1108099 1108097 1108096, overlap 1108092 AATATAAATATATAA TAGACAGGGAAAT TCC ATCCCCCTGTCTA TCCTTTATATTCATA Cthe_0922 1109213 - 1108209 - | diaminopimelate dehydrogenase TERM 1215 1109354 - 1109337 - R 95 -11.3 -3.89412 | opp_overlap 1109337 1109334 ACTTAAACTATTAAA GGAAGCC AAAC GGCTTCC TGATTTAATCTTTGG TERM 1216 1109337 - 1109354 + r 87 -11.3 -3.04755 | opp_overlap 1109337, overlap 1109334 ACTTAAACTATTAAA GGAAGCC AAAC GGCTTCC TGATTTAATCTTTGG Cthe_0923 1110182 - 1109409 - | hypothetical protein Cthe_0924 1111031 - 1110318 - | hypothetical protein Cthe_0925 1111873 - 1111226 - | hypothetical protein TERM 1217 1111506 - 1111521 + g 70 -2.6 -5.15117 | CTTTCCATATAAGTC TTGTTG ACCG CAATAA TTTTTTGAACTTTTA Cthe_0926 1112817 - 1111909 - | signal recognition particle-docking protein FtsY Cthe_0927 1116426 - 1112854 - | condensin subunit Smc pdxA 1117577 - 1116555 - | 4-hydroxythreonine-4-phosphate dehydrogenase TERM 1218 1117726 - 1117703 - R 100 -14 -5.28755 | AAACACATTAAAAAA GCTGTTCTTG TAAC CAAGAACAGC CTCAAAACAGTAAAT Cthe_0929 1118013 - 1117753 - | stage V sporulation protein S TERM 1219 1118059 - 1118035 - R 78 -6.7 -4.36914 | opp_overlap 1118035 TTCCTCCTCATAAAA TTTAACTTATA TAA TATAAATTAAA TTAATTAAAACAAAT Cthe_0930 1119188 - 1118172 - | radical SAM family protein TERM 1220 1118366 - 1118380 + g 71 -4.2 -4.8622 | opp_overlap 1118368, overlap 1118368 CAATCGCCTTTTCAA TAGCAC TAA GTGCCA TTTTTGATTCCACCA TERM 1221 1118556 - 1118567 + g 73 -5.8 -4.56961 | opp_overlap 1118555, overlap 1118547 CTCAAGCTCCAAAGG GGTG TATT CACC TTTTATATACATCTT Cthe_0931 1120119 - 1119409 - | ribonuclease III TERM 1222 1120175 - 1120144 - R 77 -9 -3.27704 | opp_overlap 1120144 1120147, overlap 1120147 ATCCTTCAAAGGCAA TAATATATATTTCC TGAC GGAAAAATATATTA TCATATTTCACAGCT TERM 1223 1120144 - 1120175 + r 73 -9 -2.84504 | opp_overlap 1120144 1120147, overlap 1120147 ATCCTTCAAAGGCAA TAATATATATTTCC TGAC GGAAAAATATATTA TCATATTTCACAGCT TERM 1224 1120194 - 1120217 + r 91 -9.5 -4.37092 | TATTTCACAGCTTTA GGGGAACGG AATAAA CCGTCCCCC TTTTATAAACACAAT Cthe_0932 1121506 - 1120271 - | 3-oxoacyl-[acyl-carrier-protein] synthase II TERM 1225 1120775 - 1120809 + g 72 -10.2 -2.59564 | overlap 1120774 TCCTCTCTTCAGCGC GTGCTCCAATTCTT CCAACAC AAGAATTGCAGCAC CTTCTCCCATAACAA TERM 1226 1121623 - 1121662 + r 89 -8.9 -4.50988 | gap 1, opp_overlap 1121634, overlap 1121624 1121634 TGCCATAATAAGTTT ATCATAAAAAA-GTCCCT TTTGC AGGGACTTTTTTTATGAA TTATTTTTAATGTAC TERM 1227 1121624 - 1121661 + r 90 -12.4 -3.29508 | gap 1, opp_overlap 1121634, overlap 1121623 1121634 GCCATAATAAGTTTA TCATAAAAAA-GTCCCT TTTGC AGGGACTTTTTTTATGA ATTATTTTTAATGTA TERM 1228 1121650 - 1121634 - R 93 -8 -5.31275 | opp_overlap 1121624 1121623 1121634 GTTTATCATAAAAAA GTCCCT TTTGC AGGGAC TTTTTTTATGAATTA TERM 1229 1121634 - 1121650 + r 100 -8 -5.66684 | opp_overlap 1121634, overlap 1121624 1121623 GTTTATCATAAAAAA GTCCCT TTTGC AGGGAC TTTTTTTATGAATTA Cthe_0933 1121880 - 1121656 - | acyl carrier protein Cthe_0934 1122711 - 1121968 - | 3-oxoacyl-[acyl-carrier-protein] reductase TERM 1230 1122287 - 1122311 + g 95 -4.3 -5.79595 | opp_overlap 1122289, overlap 1122289 ATAATACCCGCAATA GAGGTAATATT TAT AATTTTACCGC TTTTTTGTTTTAACA Cthe_0935 1123688 - 1122753 - | [Acyl-carrier-protein] S-malonyltransferase Cthe_0936 1124737 - 1123742 - | 3-oxoacyl-[acyl-carrier-protein] synthase III Cthe_0937 1125740 - 1124721 - | phosphate:acyl-[acyl carrier protein] acyltransferase Cthe_0938 1126368 - 1125802 - | fatty acid biosynthesis transcriptional regulator TERM 1231 1126056 - 1126073 + g 83 -7.1 -4.788 | opp_overlap 1126071, overlap 1126063 1126071 GTCCCTGAACGATCC TGGTTTT TTCA AAAACCA TTTTTGAATTGGTTT TERM 1232 1126648 - 1126594 - R 89 -7.8 -4.93595 | opp_overlap 1126595 1126606, overlap 1126601 1126602 1126606 ATAAAAAGCTAAAAA CGGATAATCGAACATGAGGCAGGTGT AAA ACACCTGCCTCATGTTTGGGCAATCT TTTCCGGGTTATCTT TERM 1233 1126595 - 1126647 + r 100 -15.7 -4.16251 | opp_overlap 1126594 1126601 1126602 1126606, overlap 1126606 TAAAAAGCTAAAAAC GGATAATCGAACATGAGGCAGGTGT AAA ACACCTGCCTCATGTTTGGGCAATC TTTTCCGGGTTATCT TERM 1234 1126641 - 1126601 - R 100 -19.9 -3.5616 | opp_overlap 1126595 1126606, overlap 1126594 1126602 1126606 GCTAAAAACGGATAA TCGAACATGAGGCAGGTGT AAA ACACCTGCCTCATGTTTGG GCAATCTTTTCCGGG TERM 1235 1126640 - 1126602 - R 100 -23.4 -2.72973 | opp_overlap 1126595 1126606, overlap 1126601 1126594 1126606 CTAAAAACGGATAAT CGAACATGAGGCAGGTGT AAA ACACCTGCCTCATGTTTG GGCAATCTTTTCCGG TERM 1236 1126606 - 1126636 + r 100 -22.8 -3.58731 | opp_overlap 1126602 1126601 1126594 1126606, overlap 1126595 AAACGGATAATCGAA CATGAGGCAGGTGT AAA ACACCTGCCTCATG TTTGGGCAATCTTTT TERM 1237 1126636 - 1126606 - R 100 -22.8 -3.25361 | opp_overlap 1126606 1126595, overlap 1126602 1126601 1126594 AAACGGATAATCGAA CATGAGGCAGGTGT AAA ACACCTGCCTCATG TTTGGGCAATCTTTT Cthe_0939 1127475 - 1126975 - | hypothetical protein Cthe_0940 1128006 - 1127566 - | hypothetical protein TERM 1238 1128295 - 1128319 + r 100 -7.1 -5.85244 | opp_overlap 1128295 AAAGCCACAAAAAAA GAGCCAGAGTA TGG TTCTCTGACTC TTTTTTATTTTACTT TERM 1239 1128319 - 1128295 - R 100 -9.3 -5.68039 | opp_overlap 1128295 AAAGCCACAAAAAAA GAGCCAGAGTA TGG TTCTCTGACTC TTTTTTATTTTACTT Cthe_0941 1128950 - 1128333 - | CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase Cthe_0942 1130295 - 1128934 - | MiaB-like tRNA modifying enzyme YliG TERM 1240 1130196 - 1130209 + g 74 -3.9 -5.06414 | CTTCACTGTCGGATG TGATT TCAA AATCA TTTTTCTTAAGCAAC Cthe_0943 1130692 - 1130441 - | hypothetical protein TERM 1241 1130640 - 1130672 + g 89 -4.4 -5.55664 | gap 1, overlap 1130636 1130657 ATTCTCAAATTTTTG GCTTTATCCAAATTA TCCT TAATTTG-ATTAAGC TTTTTTTCATAGTCA Cthe_0944 1132143 - 1130692 - | SMC protein-like protein TERM 1242 1130760 - 1130774 + g 85 -7.1 -4.84761 | opp_overlap 1130760 TACTGCTCTTGCAAA GCGGA CACAC TCCGC TTTTTCTAAGAATAT TERM 1243 1131515 - 1131527 + g 70 -7.7 -3.66429 | overlap 1131511 GCGATTACTTTCTCG GACTC TTC GAGTC TTCTTCCCAATTCTT Cthe_0945 1133132 - 1132140 - | metallophosphoesterase TERM 1244 1132646 - 1132682 + g 86 -4.5 -5.45726 | gap 1 TTAAAAGAAGCATTC CGTGCACGATGTTTAT GGCATA ATCCACATCG-GCACG TTTTTTTACAATATA TERM 1245 1132754 - 1132770 + g 76 -4.3 -5.05782 | overlap 1132757 ACCTTCCGGTAAGCT GAACGGT TAT GCCGTCC TTTTTTAAAATCACT Cthe_0946 1133909 - 1133208 - | phosphoglycerate mutase Cthe_0947 1134921 - 1133998 - | dihydroorotate oxidase B, catalytic subunit Cthe_0948 1135699 - 1134914 - | dihydroorotate oxidase B, electron transfer subunit TERM 1246 1134988 - 1134999 + g 73 -7.2 -4.07568 | opp_overlap 1134987 TGTATTCCCAATTAT CCGG CTTT CCGG TTTTGCACGCGCACA TERM 1247 1135309 - 1135296 - G 76 -4.5 -5.09426 | overlap 1135275 CTGAATCCTAAAAAA GCAGA CTTG TCCGC GTCCTTCATCTCCCT carB 1138943 - 1135725 - | carbamoyl phosphate synthase large subunit TERM 1248 1135955 - 1135972 + g 78 -2.7 -5.40474 | opp_overlap 1135955 TCAAATTCAGAAGAT TTGGC TCACCCTC GCCAA TTTTTTTCACGGCAT Cthe_0950 1140107 - 1139034 - | carbamoyl-phosphate synthase small subunit Cthe_0951 1141081 - 1140137 - | orotidine 5'-phosphate decarboxylase Cthe_0952 1142493 - 1141213 - | dihydroorotase TERM 1249 1141653 - 1141666 + g 73 -6.7 -4.19735 | CAACATCTCTTCTCG TCCTC AGCG GAGGA TTTACTTTTGCAAGG pyrB 1143421 - 1142483 - | aspartate carbamoyltransferase catalytic subunit TERM 1250 1143514 - 1143488 - R 88 -6.1 -5.40474 | gap 1, opp_overlap 1143488 ATGGCCTCAAAAAAA TAGTAAGGA-TA ATGG TATTCCTTACTA TTTTTCAAAAATCAC TERM 1251 1143488 - 1143514 + r 76 -6.1 -4.58395 | gap 1, opp_overlap 1143488 ATGGCCTCAAAAAAA TAGTAAGGA-TA ATGG TATTCCTTACTA TTTTTCAAAAATCAC Cthe_0954 1144255 - 1143701 - | Uracil phosphoribosyltransferase TERM 1252 1144153 - 1144172 + g 71 -4.2 -4.89339 | opp_overlap 1144153 GAATGCCGATTAAAG CAAGGTTG TCAA CGCCCTTG TTTTTCTCAATAATT TERM 1253 1144335 - 1144312 - R 100 -11.8 -5.06103 | opp_overlap 1144309 1144312, overlap 1144298 ACAAGCTCTAAAAAA GCTTCTTACC AGTC GGCAAGAAGC TACTTTGCAACATAC TERM 1254 1144312 - 1144335 + r 75 -9.6 -2.91144 | opp_overlap 1144298 1144312, overlap 1144309 ACAAGCTCTAAAAAA GCTTCTTACC AGTC GGCAAGAAGC TACTTTGCAACATAC Cthe_0955 1144964 - 1144554 - | hypothetical protein Cthe_0956 1145255 - 1145728 + | hypothetical protein TERM 1255 1145715 - 1145736 + T 100 -10.1 -5.18715 | overlap 1145716 AAAACCACGTTTATC AGGGTAGCC ATTA GGCTACCCC TTTTATTGTTTTTAT TERM 1256 1145716 - 1145735 + T 100 -13.6 -3.67569 | overlap 1145715 AAACCACGTTTATCA GGGTAGCC ATTA GGCTACCC CTTTTATTGTTTTTA Cthe_0957 1146073 - 1145774 - | protein translocase subunit yajC Cthe_0958 1147300 - 1146176 - | queuine tRNA-ribosyltransferase queA 1148389 - 1147364 - | S-adenosylmethionine:tRNA ribosyltransferase-isomerase TERM 1257 1148528 - 1148554 + r 80 -9.4 -3.53012 | opp_overlap 1148530, overlap 1148529 CAGAAAGACACATAA AAGCTCCGGAAA ACA TTTCCGGAGCAG TTTCGACACCAAAAA TERM 1258 1148529 - 1148553 + r 95 -12.9 -2.71712 | opp_overlap 1148530, overlap 1148528 AGAAAGACACATAAA AGCTCCGGAAA ACA TTTCCGGAGCA GTTTCGACACCAAAA TERM 1259 1148552 - 1148530 - R 100 -16.4 -4.70534 | opp_overlap 1148529 1148528 GAAAGACACATAAAA GCTCCGGAAA ACA TTTCCGGAGC AGTTTCGACACCAAA Cthe_0960 1150325 - 1148613 - | SpoIID/LytB domain-containing protein TERM 1260 1150803 - 1150830 + H 73 -9.3 -2.84794 | opp_overlap 1150820, overlap 1150800 1150805 GGGGAAACTGCCGAA GGTTGTATCTG CTCAAA CAGATACAATC TGGTTATACGGTTAA TERM 1261 1150833 - 1150857 + H 71 -8.7 -2.85847 | AACAGATACAATCTG GTTATACGGTT AAG AGCTGTATAAC TGTCATCAATTTATT TERM 1262 1150945 - 1150962 + H 88 -7 -5.31545 | opp_overlap 1150944 AAATCTTGATGAACT GCTGGT ACTCAC ACCAGC TTTTTTAGTGTTCTT TERM 1263 1151523 - 1151511 - g 90 -4.9 -5.56263 | AGTATAAAATAAAAA GAATA GTT TATTC CACATACCAGGCGGT TERM 1264 1152019 - 1152002 - g 77 -4.8 -4.92791 | GACAATATAAGAAAA GGCGCT GCCACA AACGCC GTTCAAATTGCCGAA Cthe_0961 1151063 - 1152061 + | aspartate semialdehyde dehydrogenase TERM 1265 1152247 - 1152221 - g 83 -11.1 -3.63515 | opp_overlap 1152224 1152226, overlap 1152224 CTGGAGTGGCAATAA TAACACCATTT ACAGA AAATGGTGTTA ACTACGACAAGCTTG TERM 1266 1152244 - 1152224 - g 77 -8.4 -3.95324 | opp_overlap 1152224 1152226, overlap 1152221 GAGTGGCAATAATAA CACCATTT ACAGA AAATGGTG TTAACTACGACAAGC TERM 1267 1153080 - 1153034 - g 86 -10.3 -4.08919 | gap 1, overlap 1153035 AAATTTTAAAGCAAA CCCTCAAGGATTACGGCCTGAT TTAA ACCACGCCGTAATCCT-GATGA AATAATGTACAAATG Cthe_0962 1152181 - 1153059 + | dihydrodipicolinate synthase TERM 1268 1153079 - 1153035 - f 87 -11.6 -3.04267 | gap 1, overlap 1153034 AATTTTAAAGCAAAC CCTCAAGGATTACGGCCTGAT TTAA ACCACGCCGTAATCCT-GATG AAATAATGTACAAAT TERM 1269 1153383 - 1153357 - g 72 -3.6 -5.08601 | opp_overlap 1153359, overlap 1153359 CCATTGCAAGAAAAA TACCGGCAGTTA TAG CAACAACCGGTC TTAGCAACTCCCAGG TERM 1270 1153381 - 1153359 - g 71 -6.2 -4.16909 | opp_overlap 1153359, overlap 1153357 ATTGCAAGAAAAATA CCGGCAGTTA TAG CAACAACCGG TCTTAGCAACTCCCA Cthe_0963 1153119 - 1153877 + | dihydrodipicolinate reductase Cthe_0964 1153900 - 1154358 + | amino acid-binding ACT TERM 1271 1154370 - 1154403 + T 82 -7.6 -4.54821 | gap 1, opp_overlap 1154377, overlap 1154371 1154372 ATAAAATCATTGATT TA-GTTAAGCGGGGA TTTAT TCCCCGCTTAAAATA TTTTCTGATTAAAAT TERM 1272 1154371 - 1154401 + T 77 -8.3 -3.8823 | opp_overlap 1154377, overlap 1154370 1154372 TAAAATCATTGATTT AGTTAAGCGGGGA TTTAT TCCCCGCTTAAAA TATTTTCTGATTAAA TERM 1273 1154372 - 1154400 + T 88 -11.8 -2.92215 | opp_overlap 1154377, overlap 1154371 1154370 AAAATCATTGATTTA GTTAAGCGGGGA TTTAT TCCCCGCTTAAA ATATTTTCTGATTAA TERM 1274 1154395 - 1154377 - T 89 -11.7 -3.08133 | opp_overlap 1154372 1154371 1154370 CATTGATTTAGTTAA GCGGGGA TTTAT TCCCCGC TTAAAATATTTTCTG Cthe_0965 1154975 - 1154445 - | cob(I)yrinic acid a,c-diamide adenosyltransferase Cthe_0966 1155216 - 1155650 + | hypothetical protein TERM 1275 1155994 - 1156010 + T 95 -4.4 -6.20267 | opp_overlap 1155994 1155997 ACCATGAACAAAGAA GAGGGA AAACG TTCCTC TTTTTTTATTTTTAA Cthe_0967 1157532 - 1156585 - | transposase, IS4 Cthe_0968 1159830 - 1157710 - | UvrD/REP helicase TERM 1276 1160955 - 1160967 + G 73 -7.7 -3.90586 | opp_overlap 1160954 1160955 GAGTGGCAGAAAAGG CCTCT GGG AGAGG TTTATCCGATAGTAT Cthe_0970 1160466 - 1161689 + | transposase, mutator type TERM 1277 1161736 - 1161695 - T 73 -8.2 -3.49777 | opp_overlap 1161690 1161696 1161697, overlap 1161699 GCGTATATAGTATAA TCA-AGGGGTTCAGGGAAAC TCTG GTTTCC-TGAACCCCCCTGT AATATTTTATACGCA TERM 1278 1161696 - 1161735 + T 83 -10.8 -2.98387 | gap 1, opp_overlap 1161695 1161699, overlap 1161690 1161697 CGTATATAGTATAAT CA-AGGGGTTCAGGGAAAC TCT GGTTTCCTGAACCCCCCTG TAATATTTTATACGC TERM 1279 1161697 - 1161733 + T 81 -10.1 -3.03972 | opp_overlap 1161695 1161699, overlap 1161696 1161690 GTATATAGTATAATC AAGGGGTTCAGGGAAAC TCT GGTTTCCTGAACCCCCC TGTAATATTTTATAC TERM 1280 1161731 - 1161699 - T 100 -15.8 -3.49182 | gap 1, opp_overlap 1161697 1161696 1161690, overlap 1161695 ATATAGTATAATCAA GGGGTTCAGGGAAAC TCTG GTTTCC-TGAACCCC CCTGTAATATTTTAT TERM 1281 1161780 - 1161799 + T 83 -8 -4.26188 | opp_overlap 1161783, overlap 1161769 ATTTTTCTTTTGTAA GAATTTCT TATC AGAAATTC TTTTGAATCTATAAA TERM 1282 1162062 - 1162037 - T 91 -7.7 -5.14563 | GCTGCTACTAAAAAA CGAAATTTTCA TCCT CGAAAATCTCG CAAACCTTGAAGCGC TERM 1283 1162182 - 1162224 + T 79 -3.5 -5.59502 | opp_overlap 1162178, overlap 1162175 TGACCTTATAAGAAA GCCTTTCTTCCCGGT TGCCGTTTTCATT ATCGGGAAAAAGGGC TTTTTTGCTTTTTTC Cthe_0972 1162846 - 1162238 - | hypothetical protein TERM 1284 1162883 - 1162906 + r 74 -5.4 -4.8622 | overlap 1162860 1162884 TATTTTCATAATATT TTTTTATCTC ATTT GAGATAAGAG TTTTTCATTACACCA Cthe_0973 1163461 - 1163087 - | UDP-N-acetylglucosamine 1-carboxyvinyltransferase TERM 1285 1163652 - 1163635 - R 100 -7 -5.74122 | opp_overlap 1163635 GATTATATAAAAAAA GGACTC TTTTTC GAGTCC TTATGTCTAACCGGC murG 1164768 - 1163659 - | N-acetylglucosaminyl transferase Cthe_0975 1165932 - 1164781 - | stage V sporulation protein E TERM 1286 1165265 - 1165246 - G 75 -5.8 -4.67353 | opp_overlap 1165246 CCACGGATTTAAAAA GGATAAAA CTCT TTTCATCC TGTATTCGGAAGTAA TERM 1287 1165734 - 1165722 - G 75 -5.5 -4.6856 | CAAACATCGCAAAAA GTCCC ACA GGAAC ATACAGCAACTGCTT Cthe_0976 1167005 - 1166013 - | phospho-N-acetylmuramoyl-pentapeptide-transferase TERM 1288 1166664 - 1166680 + g 71 -3.7 -4.88405 | CATTTTTTGATTCCA GTAAAGA CCG TCTTTCC TTTTCTTTACCACTT TERM 1289 1166769 - 1166747 - G 70 -3.4 -4.91459 | opp_overlap 1166752, overlap 1166750 1166752 CAAGAGTTACAAAAA TAAGAGGAAG AAT CCTCCTGTCA TGTCCTGCATAAAAA TERM 1290 1166763 - 1166750 - G 79 -6.7 -4.5448 | opp_overlap 1166752, overlap 1166747 1166752 GAGTTACAAAAATAA GAGGA AGAA TCCTC CTGTCATGTCCTGCA Cthe_0977 1168460 - 1167087 - | UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase TERM 1291 1168231 - 1168248 + g 71 -6.3 -4.18494 | overlap 1168229 ATTAAAACTTTGCCG GGAAATG GTTC CGTTTCC TTTTGAGTAAGGCTG Cthe_0978 1169939 - 1168482 - | UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase TERM 1292 1169676 - 1169660 - G 76 -2.1 -5.41143 | opp_overlap 1169675 GATGCCCGAAAAAAA TGTCGGC CAC GCTGGCA AGAGCATATCTTGTA Cthe_0979 1172188 - 1170017 - | peptidoglycan glycosyltransferase TERM 1293 1171443 - 1171423 - G 70 -8.3 -3.4252 | opp_overlap 1171422 TGGGATCCATCACAA TGGCAAAAG CAC CGTTTGCCA CCTTGTTGTCCTCTA TERM 1294 1171975 - 1171991 + g 79 -8.7 -4.06148 | overlap 1171976 CAACAGTGGCACTTA TGGCAAG CTG CTTGCCG TTTCTGTCAAGTATT TERM 1295 1171976 - 1171990 + g 75 -10 -3.02966 | overlap 1171975 AACAGTGGCACTTAT GGCAAG CTG CTTGCC GTTTCTGTCAAGTAT Cthe_0980 1172877 - 1172389 - | cell division protein FtsL TERM 1296 1173111 - 1173126 + r 85 -4.8 -5.60556 | TGTTTTTTGAGTTTT GTTATA ATGG TATAAC TTTTTCTTTTGTATT TERM 1297 1173238 - 1173248 + r 70 -4 -4.95843 | TTTGGTTTGCTTTTG TGTT TTT AACA TTTTATCTTTTGTAT TERM 1298 1173306 - 1173320 + r 73 -4.4 -5.0133 | CTCAGTTTGTATCTA TTTAAA TCT TTTAAA TTTTTTCCAGAACTC Cthe_0981 1174257 - 1173316 - | S-adenosyl-methyltransferase MraW Cthe_0982 1174738 - 1174307 - | MraZ protein TERM 1299 1174891 - 1174862 - R 100 -6.6 -5.60993 | opp_overlap 1174867, overlap 1174867 TTCCTGATAAAAAAA CAAAAGATAGGA AACTAG TCCTATCTTTTC ATGATAAATTTAGTT TERM 1300 1174867 - 1174886 + r 70 -6.5 -4.31692 | opp_overlap 1174867 1174862 GATAAAAAAACAAAA GATAGGA AACTAG TCCTATC TTTTCATGATAAATT TERM 1301 1174886 - 1174867 - R 93 -6.5 -5.61277 | opp_overlap 1174867, overlap 1174862 GATAAAAAAACAAAA GATAGGA AACTAG TCCTATC TTTTCATGATAAATT Cthe_0983 1176117 - 1174987 - | cell cycle protein Cthe_0984 1177624 - 1176662 - | prolipoprotein diacylglyceryl transferase Cthe_0985 1178925 - 1177642 - | peptidase M16-like protein TERM 1302 1178563 - 1178546 - G 78 -7.1 -4.36914 | overlap 1178549 TCCTCTGTTATAAAA GGATTTT GAAC AAAATCC AAAAGGAGTCGGAAA Cthe_0986 1180254 - 1178962 - | peptidase M16-like protein TERM 1303 1180615 - 1180596 - R 70 -7.1 -3.615 | opp_overlap 1180596, overlap 1180594 AGGCTTAGATAAACA GGGAGGC ATCTTA ACCTCCC TTTCACTCCGCTTAC Cthe_0987 1181577 - 1180639 - | riboflavin kinase / FMN adenylyltransferase TERM 1304 1181224 - 1181209 - G 71 -6.8 -4.02542 | opp_overlap 1181209, overlap 1181205 AAATCTATAATTAAA GCCTGC CACC GCAAGC TTCATATTCAGCCTT Cthe_0988 1182537 - 1181644 - | tRNA pseudouridine synthase B TERM 1305 1182073 - 1182063 - G 73 -5.4 -4.62336 | ATCCCACGTCAAAAA CAAC TCT GTTG CCTCGGATACTTAAA Cthe_0989 1183497 - 1182541 - | phosphoesterase, RecJ-like protein TERM 1306 1183561 - 1183574 + r 70 -8.1 -3.11366 | overlap 1183560 GCTCAAGTATCTTCA GGGTC TTTT GACCC CTTATTTTGAGCTGA Cthe_0990 1183919 - 1183548 - | ribosome-binding factor A Cthe_0991 1187090 - 1183983 - | translation initiation factor 2 TERM 1307 1185743 - 1185755 + g 72 -3.3 -5.04265 | opp_overlap 1185739, overlap 1185739 1185744 ACGTAACCACAGGCT TTGGC GGA GCCGG TTTTTCCTCTTTTTT TERM 1308 1186012 - 1186022 + g 70 -5.4 -4.40963 | CTTTCGGCACGCTGT GAGT TAA ACTC TTCTTTTTGGGAAGT TERM 1309 1186431 - 1186448 + g 77 -6.3 -4.59414 | gap 1 ATTAACATTGGTAGC GCTATCCG CCA CGG-TAGC TTTTACTTCTTCTAA TERM 1310 1186740 - 1186752 + g 74 -4.8 -4.66537 | CTTCTTTTGACTCTT GGCA TCATT TGCC TTTATTTCCTTTATT Cthe_0992 1187421 - 1187068 - | 50S ribosomal protein L7AE TERM 1311 1187415 - 1187399 - G 74 -3.7 -5.09426 | GCCAATCCCAAAAAA GAGTATA TTC TATTCTC CAGCATGGCCCTCCT Cthe_0993 1187686 - 1187408 - | hypothetical protein TERM 1312 1187579 - 1187600 + g 81 -7.4 -4.59109 | opp_overlap 1187578 1187583, overlap 1187583 TTTCCCGGTAAAATC CAAAGAGA TTTCAT TCTCTTTG TTTTTAACAACTCTG Cthe_0994 1188983 - 1187769 - | NusA antitermination factor Cthe_0995 1189535 - 1189071 - | hypothetical protein TERM 1313 1189706 - 1189668 - R 100 -12.6 -4.46112 | opp_overlap 1189678, overlap 1189671 1189673 TTCTAGTGAAAGAAA TAATAGGAAAGAGTGGGT CCG ACCCACTCTTTACCATAA GCTACTATTTGCTTT TERM 1314 1189703 - 1189671 - R 100 -14.3 -4.34285 | opp_overlap 1189678, overlap 1189668 1189673 TAGTGAAAGAAATAA TAGGAAAGAGTGGGT CCG ACCCACTCTTTACCA TAAGCTACTATTTGC TERM 1315 1189701 - 1189673 - R 100 -14.7 -3.75911 | opp_overlap 1189678, overlap 1189671 1189668 GTGAAAGAAATAATA GGAAAGAGTGGGT CCG ACCCACTCTTTAC CATAAGCTACTATTT TERM 1316 1189678 - 1189696 + r 100 -13.2 -3.60627 | opp_overlap 1189673 1189671 1189668 AGAAATAATAGGAAA GAGTGGGT CCG ACCCACTC TTTACCATAAGCTAC Cthe_0996 1194215 - 1189887 - | DNA polymerase III PolC TERM 1317 1190080 - 1190096 + g 75 -5.7 -4.74706 | opp_overlap 1190080 TGAAGAGCATTCAAA GGCGGTC TGA GTCCGTC TTTTTCAATCTTAAA TERM 1318 1193376 - 1193363 - G 82 -3.9 -5.40072 | CCTTGTCCAAAAAAA TCTTA ACAG TAAGA GAATTGGTAAAATCT TERM 1319 1193607 - 1193620 + g 79 -3.1 -5.39221 | CGTTTTTTCACTTTT CTCAG TTTT TTGAG TTTTTTCATTATTCT TERM 1320 1194079 - 1194092 + g 89 -6.7 -5.25803 | opp_overlap 1194078 1194071 1194079 GAAACAATAAAAATC TCCAG TTTC CTGGA TTTTTTATAAACATT Cthe_0997 1195291 - 1194233 - | 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase TERM 1321 1195482 - 1195502 + r 74 -3.9 -5.13741 | ATCAGTTCTGCTCTT TTGCGCAGC CAG GCTTCACAA TTTTTATTCAATTAC Cthe_0998 1196796 - 1195522 - | peptidase RseP Cthe_0999 1198123 - 1196978 - | 1-deoxy-D-xylulose 5-phosphate reductoisomerase Cthe_1000 1198992 - 1198156 - | phosphatidate cytidylyltransferase TERM 1322 1198580 - 1198564 - G 71 -6.7 -4.07124 | TATGAGCCAGACAAA TAAAAAG CCG CTTTTTA AGTTACGGGTTAAAA Cthe_1001 1199753 - 1198995 - | undecaprenyl pyrophosphate synthetase TERM 1323 1199883 - 1199864 - R 100 -12.2 -4.11216 | opp_overlap 1199864 GTCTGATTTTTAAAA CCCCTCTA GTGT TAGAGGGG TTTACAAACAATAAG TERM 1324 1199864 - 1199883 + r 91 -12.2 -3.53811 | opp_overlap 1199864 GTCTGATTTTTAAAA CCCCTCTA GTGT TAGAGGGG TTTACAAACAATAAG Cthe_1002 1200075 - 1199875 - | hypothetical protein Cthe_1003 1200629 - 1200078 - | ribosome recycling factor TERM 1325 1200188 - 1200201 + g 70 -5.9 -4.4831 | overlap 1200181 TCTTGAGATCATCTT CGGTG ATTT CGCCG TTCTTTTTCATGGCT Cthe_1004 1201356 - 1200649 - | uridylate kinase TERM 1326 1200959 - 1200949 - G 76 -2.4 -5.40474 | opp_overlap 1200936 1200935 ATCCGTTGAAAAAAA CGGG TTT CCTG TTCCACAGGCAAAAA TERM 1327 1201452 - 1201439 - R 74 -6.7 -4.20953 | opp_overlap 1201449, overlap 1201436 1201449 TTAAAACAACAATAA TCCCT AAAA AGGGA ACATATAAATACTTT TERM 1328 1201477 - 1201449 - R 100 -16.3 -4.64144 | opp_overlap 1201449, overlap 1201439 1201436 AATAATCCCTAAAAA GGGAACATATAAA TAC TTTATATGTTCCC TTCATCCATTACCCG TERM 1329 1201449 - 1201477 + r 100 -16.3 -3.21912 | opp_overlap 1201439 1201436 1201449 AATAATCCCTAAAAA GGGAACATATAAA TAC TTTATATGTTCCC TTCATCCATTACCCG tsf 1202144 - 1201497 - | elongation factor Ts TERM 1330 1201877 - 1201887 + g 71 -4 -5.00616 | CCTTTACAAAAGTTC TGAA ATC TTCA TTTTTTGCGGCAAAG TERM 1331 1202333 - 1202300 - R 100 -12.6 -4.29981 | opp_overlap 1202298 1202297, overlap 1202294 TAAAGATATCTAAAA TCCGACTTCAGC CAACAAGCAC GCTGAAGTCGGA AAATTCTCAAGCTTC Cthe_1006 1203098 - 1202340 - | SSU ribosomal protein S2P TERM 1332 1202438 - 1202449 + g 73 -5.8 -4.57569 | opp_overlap 1202438 GTCTTCCTTCTATAA TGGC ATCG GCCA TTTTTGACGCAATCA TERM 1333 1205047 - 1205033 - g 85 -7.2 -4.85782 | GTTTGCAAAAAGAAA CATGTT ACC AACATG AGAGCAGCCGGTTCC Cthe_1007 1203392 - 1205236 + | GTP-binding protein TypA Cthe_1008 1205397 - 1206518 + | aminodeoxychorismate lyase TERM 1334 1206603 - 1206578 - f 80 -10.6 -2.66808 | opp_overlap 1206578, overlap 1206577 1206575 AAATGAAAAAATTAT TGTGAGGATT TTACAC AATCCTCACA TTTTTATAATCCCAA TERM 1335 1206578 - 1206603 + F 100 -10.6 -4.91109 | opp_overlap 1206578 1206577 1206575 AAATGAAAAAATTAT TGTGAGGATT TTACAC AATCCTCACA TTTTTATAATCCCAA TERM 1336 1206800 - 1206784 - g 73 -9.5 -3.19602 | overlap 1206782 CTCCTTAGAGTAATA GGTCTTA CTC TAAGACC CTCCCGTGTTTTGGA Cthe_1009 1206640 - 1207278 + | O-methyltransferase family protein TERM 1337 1207822 - 1207806 - g 95 -6.5 -5.57729 | AAATAAGAGAAAAAA CTCCTGA CTC TCTGGAG CTTGAAGTTTTTGTC Cthe_1010 1207340 - 1208575 + | peptidase U32 TERM 1338 1208752 - 1208775 + F 100 -10.4 -5.47399 | GCAAAATGCTGCCAA CTGAAGTTCA ATAA TGAGCTTCAG TTTTTTTACAATTAG Cthe_1011 1208873 - 1210528 + | peptidoglycan glycosyltransferase TERM 1339 1210717 - 1210691 - g 70 -9.4 -2.68071 | overlap 1210687 TCCAATGTAAATTCA TTCCCCCAGCCT TTA AGCCCGGAGGAA GAACAGCACTATCTG TERM 1340 1210831 - 1210817 - g 89 -5.8 -5.45726 | CACATTGTAAAAAAA TATAGT TCC ACTATA AATGACAGCGATGAT Cthe_1012 1210607 - 1211317 + | sporulation sigma factor SigK Cthe_1013 1212464 - 1211382 - | hypothetical protein Cthe_1014 1215175 - 1212794 - | MutS2 family protein TERM 1341 1213077 - 1213089 + g 76 -2 -5.5112 | overlap 1213066 TTGCCAATTCCGGAA TTGT TTAAC ACAA TTTTTTGTTCGTCCA TERM 1342 1213420 - 1213440 + g 70 -3.3 -4.91712 | overlap 1213421 TAATCTCTTCCGCCT CTTTTCTTG CTT CAAGAAGAA TTTTTCTCGCTTCAG TERM 1343 1214328 - 1214314 - G 72 -10 -2.6547 | overlap 1214313 AAACACAGTTATAAT CAAGGC TGA GCCTTG CCTTGGCAAATATGA TERM 1344 1215024 - 1215012 - G 73 -5.5 -4.63218 | opp_overlap 1215012 CTTCTTGCAATAAAA GCGAC GGC GTCAC TGGTTTCCTTTTGTG Cthe_1015 1216093 - 1215671 - | hypothetical protein Cthe_1016 1217526 - 1216468 - | cell wall hydrolase/autolysin Cthe_1017 1217985 - 1217683 - | hypothetical protein TERM 1345 1218142 - 1218104 - R 74 -9 -3.10175 | overlap 1218103 ACCTCCCAAAATAAG TTTAGGCTTCGACAAAAT TAA ATTTCGCCAAAGCCCAGA TAAAACTAATTAAAG Cthe_1018 1219127 - 1218258 - | binding-protein-dependent transport systems inner membrane component Cthe_1019 1220110 - 1219127 - | binding-protein-dependent transport systems inner membrane component TERM 1346 1220225 - 1220168 - R 95 -11.8 -3.63394 | gap 2, opp_overlap 1220173 1220176, overlap 1220173 1220174 1220176 AATAAAAGACTATAA TAAAAGT-ATTGAGTCT-GTGCAGAGCA TTTC TGCTCTGCACTAAACTCAATTAACTTTA TAAAAATGTCTTTTT TERM 1347 1220219 - 1220173 - R 100 -11.1 -4.83722 | gap 1, opp_overlap 1220173 1220176, overlap 1220168 1220174 1220176 AAGACTATAATAAAA GTATTGAGTCT-GTGCAGAGCA TTTC TGCTCTGCACTAAACTCAATTA ACTTTATAAAAATGT TERM 1348 1220173 - 1220221 + r 72 -7.1 -3.89055 | gap 3, opp_overlap 1220173 1220168 1220174 1220176, overlap 1220176 AAGACTATAATAAAA GT--ATTGAGTCT-GTGCAGAGCA TTTC TGCTCTGCACTAAACTCAATTAAC TTTATAAAAATGTCT TERM 1349 1220218 - 1220174 - R 100 -14.6 -3.48607 | gap 1, opp_overlap 1220173 1220176, overlap 1220173 1220168 1220176 AGACTATAATAAAAG TATTGAGTCT-GTGCAGAGCA TTTC TGCTCTGCACTAAACTCAATT AACTTTATAAAAATG TERM 1350 1220216 - 1220176 - R 100 -17.2 -3.30187 | gap 1, opp_overlap 1220173 1220176, overlap 1220174 1220173 1220168 ACTATAATAAAAGTA TTGAGTCT-GTGCAGAGCA TTTC TGCTCTGCACTAAACTCAA TTAACTTTATAAAAA TERM 1351 1220176 - 1220216 + r 100 -15 -3.32997 | gap 1, opp_overlap 1220176 1220174 1220173 1220168, overlap 1220173 ACTATAATAAAAGTA TTGAGTCT-GTGCAGAGCA TTTC TGCTCTGCACTAAACTCAA TTAACTTTATAAAAA Cthe_1020 1221641 - 1220262 - | extracellular solute-binding protein TERM 1352 1222167 - 1222186 + r 72 -5.1 -4.88067 | ACTCACTTTCATGTA TTTGTTG TTATGT CAACAAA TTTTTATAAGTAAGT TERM 1353 1222206 - 1222220 + r 100 -5.8 -5.96219 | TATAAGTAAGTTTTG TTGTTA TGT TAACAA TTTTTTTTGTAAATA TERM 1354 1222288 - 1222241 - R 77 -2.9 -5.63517 | gap 1, opp_overlap 1222242 1222249, overlap 1222243 1222244 TTTGTAAATAAAAAA CAGGCAAAGTACTTCCATAATA TAGTT TAT-ATGGCAGTACTTTGCAAA ATTTTCTCACCTTCT TERM 1355 1222286 - 1222243 - R 82 -7.7 -4.45696 | gap 1, opp_overlap 1222242 1222249, overlap 1222241 1222244 TGTAAATAAAAAACA GGCAAAGTACTTCCATAATA TAGTT TAT-ATGGCAGTACTTTGCA AAATTTTCTCACCTT TERM 1356 1222285 - 1222244 - R 85 -11.2 -3.25791 | gap 1, opp_overlap 1222242 1222249, overlap 1222243 1222241 GTAAATAAAAAACAG GCAAAGTACTTCCATAATA TAGTT TAT-ATGGCAGTACTTTGC AAAATTTTCTCACCT Cthe_1021 1223803 - 1222325 - | stage IV sporulation protein A TERM 1357 1222532 - 1222546 + g 80 -6.4 -4.74103 | TAAAAGATAGCTGAC CAGTTC TTC GGACTG TTTTTCCGTTCCCAC TERM 1358 1224072 - 1224041 - R 87 -4.6 -5.77632 | gap 1, opp_overlap 1224041 AAAAGCACAAAAAAA GTGAGCAG-TTTG TCTTTTC CAAATCTACTCAC TTTTCAACACACATT Cthe_1022 1225169 - 1224150 - | glycerol-3-phosphate dehydrogenase (NAD(P)(+)) Cthe_1023 1225842 - 1225183 - | acyl-phosphate glycerol-3-phosphate acyltransferase Cthe_1024 1227161 - 1225839 - | small GTP-binding protein TERM 1359 1226723 - 1226695 - G 79 -8.9 -3.95852 | ATCTCATCAAGCAAA TCTCCCATTCCCA GTC CGTGAATGGAAGA AATGGCCATTAGTTC Cthe_1025 1228548 - 1227211 - | hypothetical protein TERM 1360 1228606 - 1228636 + r 74 -9.8 -2.5055 | opp_overlap 1228611, overlap 1228611 AAACACACCATAAGC AAAAAGCAGCAGTT TGT ATCTGCTGCTTTTA CTCTATTCTACGCTG TERM 1361 1228631 - 1228611 - R 100 -9.7 -4.94972 | opp_overlap 1228606 1228611 CACCATAAGCAAAAA GCAGCAGTT TGT ATCTGCTGC TTTTACTCTATTCTA TERM 1362 1228611 - 1228631 + r 91 -9.7 -4.44819 | opp_overlap 1228611, overlap 1228606 CACCATAAGCAAAAA GCAGCAGTT TGT ATCTGCTGC TTTTACTCTATTCTA Cthe_1026 1228839 - 1228639 - | 50S ribosomal protein L32P Cthe_1027 1229445 - 1228942 - | hypothetical protein TERM 1363 1229638 - 1229626 - R 76 -3.5 -5.41746 | opp_overlap 1229634, overlap 1229634 AACCCGGCAAAAAAA TAAAA AAA TTTTA TAAGCCCGTTTCCTA TERM 1364 1229672 - 1229634 - R 100 -9.8 -6.32976 | opp_overlap 1229634 1229642, overlap 1229626 AAAAAAATAAAAAAA TTTTATAAGCCCGTTTCC TAA AAAAACAGGCTTGTAAAA TTATAACGCATCTTT TERM 1365 1229634 - 1229672 + r 71 -8.4 -3.31515 | opp_overlap 1229626 1229634, overlap 1229642 AAAAAAATAAAAAAA TTTTATAAGCCCGTTT CCTAAAA AAACAGGCTTGTAAAA TTATAACGCATCTTT Cthe_1028 1230886 - 1229687 - | acetate kinase TERM 1366 1230454 - 1230438 - G 90 -10.9 -4.25283 | ATTGTCTGATGAAAA GCTGTGT CAA ACACAGC AACCATCGGCACATC Cthe_1029 1232080 - 1231004 - | phosphotransacetylase Cthe_1030 1233095 - 1232271 - | TPR repeat-containing protein Cthe_1031 1234588 - 1233155 - | aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B TERM 1367 1234456 - 1234441 - G 71 -6.8 -4.07568 | CTTTTTTGTTCAAAA CCGGAA GCAC TCCCGG CATACCGGTGCAGAC Cthe_1032 1236062 - 1234602 - | aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit A gatC 1236391 - 1236104 - | aspartyl/glutamyl-tRNA amidotransferase subunit C TERM 1368 1236603 - 1236586 - R 100 -11.3 -5.80727 | AAAAACAACAAAAAA GCGGTCT GAAA AGACCGC TGTCCCGTCCGCACA Cthe_1034 1237184 - 1236627 - | hypothetical protein Cthe_1035 1239448 - 1237457 - | DNA ligase, NAD-dependent Cthe_1036 1240250 - 1239555 - | hypothetical protein TERM 1369 1240322 - 1240344 + r 89 -9.2 -4.41616 | opp_overlap 1240318 1240317 TCTATATAAACTGTA TTGCCGCATT AAT AATGCAGCAA TTTATTTACCAAGCT TERM 1370 1240407 - 1240394 - R 91 -5.3 -5.8901 | opp_overlap 1240394, overlap 1240395 ACACAAAATAAAAAA GGAAA GAGA TTTCC CTTCCTTTTCGATAA TERM 1371 1240492 - 1240513 + r 71 -5.3 -4.55826 | gap 1, opp_overlap 1240484, overlap 1240487 1240484 CTACAACTGCTAATT CGG-AATTAT CAT ATAATTACCG TTTTCATCTTTTACC Cthe_1037 1241334 - 1240486 - | cell wall hydrolase/autolysin TERM 1372 1240892 - 1240878 - G 71 -4.2 -4.89852 | opp_overlap 1240878 GCACACTGATAAAAA GGGTTG CGT CAAGCC TGTTTGCAAGTTCAA Cthe_1038 1242587 - 1241562 - | germination protease TERM 1373 1241718 - 1241729 + g 70 -3 -5.07011 | CTGCAACACCTCTTG TATC AATT GATA TTTTTCATTTCTGTC Cthe_1039 1242708 - 1243055 + | ribosomal protein S20 TERM 1374 1243051 - 1243082 + T 85 -10.4 -3.5394 | opp_overlap 1243053 1243059, overlap 1243053 1243059 CTGCCCTCAAACAAC AATAAAAACGTACT GGAA AGTACGTTTTTATA TTTAAGGCACGCTTT TERM 1375 1243053 - 1243080 + T 100 -13 -3.34517 | opp_overlap 1243053 1243059, overlap 1243051 1243059 GCCCTCAAACAACAA TAAAAACGTACT GGAA AGTACGTTTTTA TATTTAAGGCACGCT TERM 1376 1243080 - 1243053 - T 100 -13 -4.08557 | opp_overlap 1243053 1243051 1243059, overlap 1243059 GCCCTCAAACAACAA TAAAAACGTACT GGAA AGTACGTTTTTA TATTTAAGGCACGCT TERM 1377 1243074 - 1243059 - T 100 -7.6 -5.40014 | opp_overlap 1243053 1243051 1243059, overlap 1243053 AAACAACAATAAAAA CGTACT GGAA AGTACG TTTTTATATTTAAGG TERM 1378 1243059 - 1243074 + T 91 -7.6 -5.19879 | opp_overlap 1243059 1243053, overlap 1243053 1243051 AAACAACAATAAAAA CGTACT GGAA AGTACG TTTTTATATTTAAGG TERM 1379 1243102 - 1243124 + T 88 -7 -5.28826 | gap 1, opp_overlap 1243102 AGGCACGCTTTTAAA GCTCACGGG TTTTTC CCCG-GAGC TTTTTTATGCCGTTT Cthe_1040 1244169 - 1243141 - | DNA polymerase III, delta subunit TERM 1380 1244046 - 1244061 + g 70 -2.6 -5.09173 | AAATAATTTCTTCTA TTTTGC CCAG GTAAAA TTTTTTCAGATATTC TERM 1381 1244732 - 1244709 - R 100 -15.4 -5.52384 | opp_overlap 1244709 CCTCCACCAAAAAAA CGGTTGGAGT ATGA ACTCCAACCG TTTATTACATCTGTT TERM 1382 1244709 - 1244732 + r 100 -15.4 -4.24887 | opp_overlap 1244709 CCTCCACCAAAAAAA CGGTTGGAGT ATGA ACTCCAACCG TTTATTACATCTGTT murD 1246175 - 1244775 - | UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase Cthe_1042 1246861 - 1246322 - | hypothetical protein TERM 1383 1247304 - 1247291 - H 73 -8.1 -3.53841 | opp_overlap 1247291 CAAATAAACTGACAA CCCTG ACAT CAGGG TAATTAAAATAGCCT TERM 1384 1247308 - 1247341 + H 100 -18.5 -4.78848 | opp_overlap 1247314 CTGACATCAGGGTAA TTAAAATAGCCTGCA GAAA TGCAGGCTATTTTAA TTTTCTGTTTAAAAG TERM 1385 1247335 - 1247314 - H 100 -13.1 -4.42238 | opp_overlap 1247308 TCAGGGTAATTAAAA TAGCCTGCA GAAA TGCAGGCTA TTTTAATTTTCTGTT Cthe_1043 1247414 - 1247659 + | hypothetical protein TERM 1386 1247966 - 1247946 - g 72 -10.3 -2.70932 | GGTGCCCGTGAAGGA GCCGGGCGG AAA CCAACCGGC AGAAAGAAAAAAGTA Cthe_1044 1247721 - 1248050 + | hypothetical protein TERM 1387 1248457 - 1248447 - g 74 -4 -5.0916 | overlap 1248449 TTCTCAAGATAAAAA GATT CCC AATC AATGACAGAGAAGAA Cthe_1045 1248224 - 1248550 + | hypothetical protein TERM 1388 1248701 - 1248684 - T 88 -6.3 -5.45802 | gap 1 TGTCCAAAACAAAAA GGAGCCTG TTA CAG-CTCC GGTATAGAAGATTGA TERM 1389 1248777 - 1248797 + T 74 -7.1 -4.07786 | opp_overlap 1248776 1248777 1248784, overlap 1248768 1248784 AGAGTTTTTAAAAAC TTATTAATA AAT TATTAATAA TTTATAAATTTTATA Cthe_1046 1250253 - 1248913 - | extracellular solute-binding protein TERM 1390 1250162 - 1250173 + g 73 -5.8 -4.58395 | overlap 1250160 1250159 TGTGTATTTTCCTCT GCCT TCGC AGGC TTTTTAGAACATCCG TERM 1391 1250299 - 1250287 - R 75 -2.7 -5.66989 | GAAATAGTAAAAAAA CATTG AAG CAATA TATAAAAGCCAAGCA TERM 1392 1250494 - 1250472 - R 100 -9.2 -6.15259 | opp_overlap 1250472 1250470 GAACGCAAAAAAAAA GACACTCAGA ATT TCCAAGTGTC TGTTTTTGCGCTTAA Cthe_1047 1251084 - 1250539 - | hypothetical protein Cthe_1048 1252864 - 1251329 - | rhomboid family protein Cthe_1049 1253521 - 1252901 - | regulatory protein RecX TERM 1393 1253304 - 1253320 + g 77 -9.5 -3.56099 | overlap 1253294 TCGGCTTCAGTCATG TACCTGT AAG ACAGGTA TTTGACCGCCTTGTA TERM 1394 1253852 - 1253813 - R 85 -6.6 -5.00923 | overlap 1253818 AAATATTAAATAAAA TATAATTAGGTACATATC CTGC GATATGCACCTAAACAAA ATTCACTTTAAGTTA TERM 1395 1253847 - 1253818 - R 100 -13.1 -4.13571 | overlap 1253813 TTAAATAAAATATAA TTAGGTACATATC CTGC GATATGCACCTAA ACAAAATTCACTTTA Cthe_1050 1254984 - 1253935 - | recA protein Cthe_1051 1256662 - 1255085 - | integral membrane protein MviN TERM 1396 1255963 - 1255973 + g 72 -3.2 -5.02074 | AAGAAGGTATGGCAA GCTT AAA GAGC TTTTTTGACCCCTCA Cthe_1052 1257948 - 1256707 - | competence/damage-inducible protein CinA ldh 1258185 - 1259138 + | L-lactate dehydrogenase TERM 1397 1259183 - 1259125 - f 71 -2.29999 -5.44198 | gap 3, opp_overlap 1259136 1259141, overlap 1259127 1259132 1259134 1259136 1259141 AAGAAATAATAAAAA CACTAGATATATGAAAGTTCTCCTTTTC TTTTAT GAAAAGGAGAACTTTCAT-TAT-TGAT- AAATATATAAACTAG TERM 1398 1259181 - 1259127 - f 87 -8.5 -4.30912 | gap 3, opp_overlap 1259136 1259141, overlap 1259125 1259132 1259134 1259136 1259141 GAAATAATAAAAACA CTAGATATATGAAAGTTCTCCTTTTC TTTTAT GAAAAGGAGAACTTTCAT-TAT-T-G ATAAATATATAAACT TERM 1399 1259178 - 1259132 - f 100 -16.4 -3.08342 | gap 1, opp_overlap 1259136 1259141, overlap 1259127 1259125 1259134 1259136 1259141 AATAAAAACACTAGA TATATGAAAGTTCTCCTTTTC TTTTAT GAAAAGGAGAACTTTCAT-TA TTGATAAATATATAA TERM 1400 1259177 - 1259134 - f 100 -17.1 -3.07414 | opp_overlap 1259136 1259141, overlap 1259132 1259127 1259125 1259136 1259141 TAAAAACACTAGATA TATGAAAGTTCTCCTTTTC TTTTAT GAAAAGGAGAACTTTCATT ATTGATAAATATATA TERM 1401 1259175 - 1259136 - f 100 -19.7 -3.07401 | opp_overlap 1259136 1259141, overlap 1259134 1259132 1259127 1259125 1259141 AAAACACTAGATATA TGAAAGTTCTCCTTTTC TTTTAT GAAAAGGAGAACTTTCA TTATTGATAAATATA TERM 1402 1259136 - 1259175 + F 100 -19.7 -3.74361 | opp_overlap 1259136 1259134 1259132 1259127 1259125 1259141, overlap 1259141 AAAACACTAGATATA TGAAAGTTCTCCTTTTC TTTTAT GAAAAGGAGAACTTTCA TTATTGATAAATATA TERM 1403 1259141 - 1259170 + F 100 -13.8 -4.09805 | opp_overlap 1259136 1259134 1259132 1259127 1259125 1259141, overlap 1259136 ACTAGATATATGAAA GTTCTCCTTTTC TTTTAT GAAAAGGAGAAC TTTCATTATTGATAA TERM 1404 1259170 - 1259141 - f 100 -13.8 -3.91597 | opp_overlap 1259141 1259136, overlap 1259136 1259134 1259132 1259127 1259125 ACTAGATATATGAAA GTTCTCCTTTTC TTTTAT GAAAAGGAGAAC TTTCATTATTGATAA Cthe_1054 1259260 - 1260216 + | ATPase Cthe_1055 1260203 - 1261411 + | hypothetical protein TERM 1405 1263174 - 1263145 - g 76 -9.3 -3.68506 | overlap 1263147 CAACACTTATCTAAA CATACCCTCCGAG CTTC CTCAGAGGGTAAA AGACCTTGCCGTTTC TERM 1406 1263172 - 1263147 - g 100 -14.1 -3.41836 | overlap 1263145 ACACTTATCTAAACA TACCCTCCGAG CTTC CTCAGAGGGTA AAAGACCTTGCCGTT TERM 1407 1263477 - 1263464 - g 82 -8.1 -4.56367 | GAGGTTACAAACAAA CAGGC CCAC GCCTG GCCGGAGATCTACTT Cthe_1056 1261445 - 1264117 + | transglutaminase-like protein TERM 1408 1264147 - 1264182 + T 100 -12.7 -3.19513 | opp_overlap 1264149 1264151, overlap 1264147 1264181 TTTACGATTTGTCAA GAGACTGTGGAGACT CTTTTA AGCCTCTACAGTCTC TTAACTTAAGATTCT TERM 1409 1264180 - 1264149 - T 81 -10.2 -3.03441 | opp_overlap 1264147 1264147, overlap 1264151 TACGATTTGTCAAGA GACTGTGGAGACTC TTTT AAGCCTCTACAGTC TCTTAACTTAAGATT Cthe_1057 1264447 - 1264253 - | phage shock protein C, PspC TERM 1410 1264538 - 1264556 + r 70 -7.4 -3.5698 | opp_overlap 1264538, overlap 1264536 TTGTCTGAAAAAAAA CACCGG TTATTTC CCGGTG TCTTGTCTTTTCGCT TERM 1411 1264556 - 1264538 - R 100 -7.4 -5.75342 | opp_overlap 1264538 1264536 TTGTCTGAAAAAAAA CACCGG TTATTTC CCGGTG TCTTGTCTTTTCGCT Cthe_1058 1265821 - 1264583 - | serine hydroxymethyltransferase Cthe_1059 1266169 - 1265858 - | hypothetical protein TERM 1412 1265912 - 1265892 - G 100 -10.5 -5.82172 | AGGAATAGAAAAAAA GCCAAATCC AAA GGATTTGAC CTCCGAAAAGACAGA Cthe_1060 1267237 - 1266254 - | AIR synthase related protein-like protein TERM 1413 1266304 - 1266325 + g 70 -5.9 -4.3739 | opp_overlap 1266304, overlap 1266297 CGGAAATGTCAATAA CTTGATTGT CTTC ACAAACAAG TTTTCTACCCAAATC Cthe_1061 1268065 - 1267379 - | hypothetical protein Cthe_1062 1269528 - 1268083 - | VanW TERM 1414 1268193 - 1268204 + g 75 -3 -5.22039 | opp_overlap 1268193, overlap 1268164 GTACAGGTTTATAAA TATC TTCG GATA TTTTTTCCCTTTCAA Cthe_1063 1270806 - 1269628 - | thiamine biosynthesis/tRNA modification protein ThiI Cthe_1064 1271966 - 1270803 - | aminotransferase, class V TERM 1415 1271534 - 1271554 + g 87 -3.3 -5.75945 | opp_overlap 1271539, overlap 1271539 TGTAAATCACGCTTA TAAGAGAAG TTT CTTCATTTA TTTTTTTTCGCAGGT TERM 1416 1272129 - 1272106 - R 100 -7.4 -5.36314 | opp_overlap 1272106 GAAAATATTAAAAAA GTCCTTCCTC AACA GCGGAAAGAC TAATATCTCCTAAAT Cthe_1065 1272904 - 1272242 - | type IV pilus assembly PilZ TERM 1417 1273022 - 1272984 - R 79 -8.2 -4.12254 | opp_overlap 1272996 1272997, overlap 1272985 GATTATGATAAATAA GCTTTGCATCCACGCTTG CCC CAAGCATTGATTCAAAGA AAACAAAACTGTCTG TERM 1418 1273021 - 1272985 - R 89 -11.7 -3.0663 | opp_overlap 1272996 1272997, overlap 1272984 ATTATGATAAATAAG CTTTGCATCCACGCTTG CCC CAAGCATTGATTCAAAG AAAACAAAACTGTCT TERM 1419 1273413 - 1273437 + r 78 -2.3 -5.82388 | gap 1, opp_overlap 1273405 1273413 1273417, overlap 1273405 1273417 ATGTAAAGGAAATAA GTCAGGTATA TTTCCT TATACCT-AC TTTTTTTTAGCATTT Cthe_1066 1274199 - 1273444 - | DNA replication and repair protein RecO TERM 1420 1273867 - 1273857 - G 79 -3.2 -5.44721 | opp_overlap 1273863 1273864 1273866, overlap 1273858 ATGAGTTTAAAAAAA GCTG CAA CAAC CTGGATGCAGGCTGA TERM 1421 1274470 - 1274483 + r 71 -6.7 -4.08064 | opp_overlap 1274459 1274470, overlap 1274459 ACCACACTTATGCAA CAGCA TGAA TGCTG TTTTACACAAGAGTT Cthe_1067 1275400 - 1274507 - | GTP-binding protein Era TERM 1422 1274792 - 1274812 + g 70 -8.4 -3.29558 | opp_overlap 1274800 GGGTACTTCATCGCT GAGAAGAT GCAGA ATCTTCTC TCTTATAAGTTCTGC Cthe_1068 1275842 - 1275456 - | cytidine deaminase TERM 1423 1275495 - 1275485 - G 71 -6.8 -4.10429 | AAGCATTCGGTAAAA GCTC TCC GAGC CTAAAAACCGTAAAT TERM 1424 1275787 - 1275798 + g 78 -3 -5.47431 | AATTTGGAATAGGGA GAAT AGGA ATTC TTTTTTATATCTTCA Cthe_1069 1276546 - 1276058 - | hypothetical protein TERM 1425 1276098 - 1276110 + g 90 -4.9 -5.61596 | TTTAGTATGGCTTCC TGTTT TTC AAACA TTTTTTTCTCCCGCT Cthe_1070 1278848 - 1276647 - | metal dependent phosphohydrolase TERM 1426 1277087 - 1277107 + g 70 -2.6 -5.06052 | overlap 1277089 1277090 GATGCTGTAAAATTA TGTCTCTT ATAGG AAGAGGTA TTTTATATTTTTTGG Cthe_1071 1279893 - 1278892 - | PhoH-like protein Cthe_1072 1281090 - 1279894 - | putative stage IV sporulation YqfD TERM 1427 1280052 - 1280062 + g 71 -6.8 -3.98224 | opp_overlap 1280052 CTTTCCTGTATGCAA TGCC TGC GGCA TTCTCTTTTGCATCT TERM 1428 1280143 - 1280133 - G 73 -8.2 -3.94877 | ATCTTTCAATAACAA GCCC AAA GGGC AGAACAAATTCTTCA Cthe_1073 1281423 - 1281106 - | hypothetical protein Cthe_1074 1282481 - 1281519 - | polysaccharide deacetylase TERM 1429 1282079 - 1282089 + g 73 -5.4 -4.61231 | opp_overlap 1282079 1282088 CTTCGTCAAAAGTAA GGTA TAT TACC TTTTTGGAGGTATCA TERM 1430 1282561 - 1282504 - R 100 -11.7 -5.06414 | gap 1, opp_overlap 1282504 1282506 1282507, overlap 1282506 1282507 GCCTCCCAATAAAAA CACTGCAGGCCTTAAATAATGTACT-TA AAA TATAGTACAAAATTTAAGGCCTACAATA TTTATACATTGGATT TERM 1431 1282559 - 1282506 - R 100 -12.1 -4.16307 | gap 1, opp_overlap 1282504 1282506 1282507, overlap 1282504 1282507 CTCCCAATAAAAACA CTGCAGGCCTTAAATAATGTACT-TA AAA TATAGTACAAAATTTAAGGCCTACAA TATTTATACATTGGA TERM 1432 1282506 - 1282559 + r 73 -7.7 -3.57808 | gap 1, opp_overlap 1282506 1282504 1282507, overlap 1282504 1282507 CTCCCAATAAAAACA CTGCAGGCCTTAAATAATGTACT-TA AAA TATAGTACAAAATTTAAGGCCTACAA TATTTATACATTGGA TERM 1433 1282507 - 1282558 + r 82 -11.2 -2.74203 | gap 1, opp_overlap 1282506 1282504 1282507, overlap 1282506 1282504 TCCCAATAAAAACAC TGCAGGCCTTAAATAATGTACT-TA AAA TATAGTACAAAATTTAAGGCCTACA ATATTTATACATTGG TERM 1434 1282558 - 1282507 - R 100 -13.4 -3.09061 | gap 1, opp_overlap 1282507 1282506 1282504, overlap 1282506 1282504 TCCCAATAAAAACAC TGCAGGCCTTAAATAATGTACT-TA AAA TATAGTACAAAATTTAAGGCCTACA ATATTTATACATTGG TERM 1435 1282686 - 1282668 - R 91 -8.1 -5.07652 | opp_overlap 1282667 GCTTTTAAAACAAAA GGAGGCA ACAAA TGCCCCC GCTCTTTCCCAAACG Cthe_1075 1283415 - 1282714 - | hypothetical protein Cthe_1076 1284128 - 1283415 - | hypothetical protein TERM 1436 1283603 - 1283613 + g 77 -8.2 -4.23674 | overlap 1283599 TTATTTCGTACGGGA CCGG ATA CCGG TTTCTGTTGATACGC Cthe_1077 1284358 - 1284987 + | hypothetical protein TERM 1437 1285213 - 1285187 - g 93 -6.6 -5.37593 | overlap 1285189 GCGGAAATGAAAAAA GGCAACATCC CGTGCAT GGATGTTGAC AATATGGATGAATTC Cthe_1078 1285124 - 1285441 + | hypothetical protein TERM 1438 1285467 - 1285452 - T 73 -7.5 -3.69621 | opp_overlap 1285451 1285452 ACTGATAATCTTAAA GGGGC GTCAAA GCCCC ACTTTTTTAACCAAA Cthe_1079 1287963 - 1285501 - | nucleotidyl transferase TERM 1439 1285565 - 1285580 + g 73 -5.4 -4.48987 | opp_overlap 1285565, overlap 1285548 1285543 TCTTCTGCAAATTCA GCGGAA TAAC TTTCGC TTTTAATTCTGCAGA TERM 1440 1287390 - 1287406 + g 74 -3.8 -5.09204 | opp_overlap 1287396 GAAACAAATCCTTGC TGAAAT CAAAC ATTTCA TTTTTGTTAAAATAT TERM 1441 1288288 - 1288249 - H 87 -4.4 -5.72254 | gap 1, opp_overlap 1288250, overlap 1288250 1288252 TCAAATAATAAAAAA CCACTG-CAGGTTATGTTT TTT AAACATCACCTGTCAGAAA TTATTAACAAAAAAT TERM 1442 1288285 - 1288252 - H 85 -10.5 -3.54636 | gap 1, opp_overlap 1288250, overlap 1288250 1288249 AATAATAAAAAACCA CTG-CAGGTTATGTTT TTT AAACATCACCTGTCAG AAATTATTAACAAAA Cthe_1080 1288334 - 1288657 + | carbohydrate-binding family 25 protein TERM 1443 1288720 - 1288697 - f 70 -8.1 -3.1012 | opp_overlap 1288698 AAAGTTTTAAAATCA GGCAGGGAG GACAAT CTCCCTGCT TTTTTATTAAAATTT TERM 1444 1288698 - 1288719 + F 100 -12.3 -5.4756 | opp_overlap 1288697 AAGTTTTAAAATCAG GCAGGGAGG ACAA TCTCCCTGC TTTTTTATTAAAATT TERM 1445 1288942 - 1288920 - g 76 -7 -4.46212 | TCCCGTACCACAAAA CCAAATCGCC GCA AACGATTCGG AAGAAGTTCAAAAAG TERM 1446 1289244 - 1289220 - g 79 -5.8 -4.85782 | GCTTCTAAAAAGAAA TTCTTCCG TCATACAAC CGGAAGAA AACAAAGAACCCAGC Cthe_1081 1288867 - 1289334 + | hypothetical protein TERM 1447 1289342 - 1289367 + F 80 -6.3 -4.81082 | opp_overlap 1289348, overlap 1289348 AAAGGTGATGTTGTT TAAAAAGTCTT GAAA AAGACTTTTTC TTTTATTGATTAATT TERM 1448 1289348 - 1289361 + F 87 -5.3 -5.62288 | opp_overlap 1289348, overlap 1289342 GATGTTGTTTAAAAA GTCTT GAAA AAGAC TTTTTCTTTTATTGA TERM 1449 1289361 - 1289348 - f 71 -5.3 -4.57073 | opp_overlap 1289348 1289342 GATGTTGTTTAAAAA GTCTT GAAA AAGAC TTTTTCTTTTATTGA Cthe_1082 1289498 - 1289755 + | hypothetical protein TERM 1450 1289764 - 1289799 + F 72 -2.5 -5.37593 | opp_overlap 1289774, overlap 1289765 1289768 1289772 1289774 AGAATAATCGGCTTT TTCCTGGAAAGGGGG TTTTCC CCCTCTTTCCATAAC TTTTTTCATTTACAG TERM 1451 1289768 - 1289795 + F 88 -12.1 -2.96808 | opp_overlap 1289774, overlap 1289765 1289764 1289772 1289774 TAATCGGCTTTTTCC TGGAAAGGGGG TTTTCC CCCTCTTTCCA TAACTTTTTTCATTT TERM 1452 1289774 - 1289787 + F 80 -9.5 -3.42684 | opp_overlap 1289774, overlap 1289772 1289768 1289765 1289764 GCTTTTTCCTGGAAA GGGGG TTTT CCCCC TCTTTCCATAACTTT TERM 1453 1289787 - 1289774 - f 80 -9.5 -3.53012 | opp_overlap 1289772 1289768 1289765 1289764 1289774 GCTTTTTCCTGGAAA GGGGG TTTT CCCCC TCTTTCCATAACTTT TERM 1454 1289985 - 1289963 - g 79 -3.4 -5.39755 | TACAAGGATAAAAAA GGTGTTTG GTGGATA CAAACCCC TGATGAATACAAAAT TERM 1455 1290503 - 1290479 - g 71 -4.9 -4.57073 | opp_overlap 1290486, overlap 1290481 GACTGGGTTGAAAAA GTCAAAAGCCG GGG CGGGCTTTGCC ATCAGGATTTTGCAG Cthe_1083 1289870 - 1290919 + | putative homoserine kinase type II (protein kinase fold)-like protein TERM 1456 1291902 - 1291892 - g 89 -6.8 -5.18561 | CAAAGATTGAAAAAA CAGC AAG GCTG GAAACTTCCAAAGTA Cthe_1084 1290925 - 1291962 + | spore coat protein TERM 1457 1292134 - 1292109 - g 79 -8.3 -4.07885 | CAGTTTTTTCTAAAA TTCATCCCGGA CTTT CCCCGGATGAA GTGGTCGACAATGTA TERM 1458 1292731 - 1292717 - g 73 -8.6 -3.66365 | overlap 1292713 GATTATACAAAGCAA TGCAAG GCC CTTGCA GAACAATTAAGCGGT Cthe_1085 1291979 - 1293271 + | glycosyl transferase, group 1 TERM 1459 1294035 - 1294045 + G 74 -4 -5.07652 | overlap 1294040 GGACCACTGCATAGC TCTT ACA AAGA TTTTGTTTTACGGCC Cthe_1086 1293343 - 1294329 + | dTDP-glucose 4,6-dehydratase TERM 1460 1294405 - 1294368 - T 93 -8.5 -4.90525 | opp_overlap 1294368 1294370, overlap 1294376 TAATCTTAAATAAAA TTTTAAAACCCCATCCG ATTT CAGATGGGGTTACAATA ATTAATACGATATTT TERM 1461 1294397 - 1294376 - T 100 -12.3 -4.30559 | opp_overlap 1294370 1294368, overlap 1294368 AATAAAATTTTAAAA CCCCATCCG ATTT CAGATGGGG TTACAATAATTAATA Cthe_1087 1294670 - 1294407 - | hypothetical protein TERM 1462 1294687 - 1294738 + r 100 -14.6 -3.7956 | opp_overlap 1294696, overlap 1294691 1294696 CAAACCACTCCACAG GCAGTAAAACACACAGAACTGCAG CTTA TTGCAGTTCTGCGCGTTTTATGGC TTATTCACTTCTTTG TERM 1463 1294691 - 1294734 + r 100 -14.8 -2.67316 | opp_overlap 1294696, overlap 1294687 1294696 CCACTCCACAGGCAG TAAAACACACAGAACTGCAG CTTA TTGCAGTTCTGCGCGTTTTA TGGCTTATTCACTTC TERM 1464 1294729 - 1294696 - R 100 -14 -4.29738 | opp_overlap 1294691 1294687 1294696 CCACAGGCAGTAAAA CACACAGAACTGCA GCTTAT TGCAGTTCTGCGCG TTTTATGGCTTATTC TERM 1465 1294696 - 1294729 + r 95 -10.3 -4.50943 | opp_overlap 1294696, overlap 1294691 1294687 CCACAGGCAGTAAAA CACACAGAACTGCAG CTTA TTGCAGTTCTGCGCG TTTTATGGCTTATTC Cthe_1088 1295479 - 1294739 - | hypothetical protein TERM 1466 1295224 - 1295244 + g 71 -4 -4.88228 | TCAGTTTCTTGTAAC CGGGTTTT GTTAA AGAATCCG TTTTTGATATTACCT TERM 1467 1295723 - 1295679 - R 100 -16.9 -4.19817 | gap 1, opp_overlap 1295690 1295692, overlap 1295692 TGGACTTATGCAAAA TTGCATAAAAAA-ACTGCCC AAAAAA GGGCAGTATTTTTTATGCAA GGATAATATCTTTTT TERM 1468 1295690 - 1295711 + r 83 -5.8 -5.24129 | opp_overlap 1295679 1295692, overlap 1295692 AAAATTGCATAAAAA AACTGCCC AAAAAA GGGCAGTA TTTTTTATGCAAGGA TERM 1469 1295692 - 1295709 + r 83 -8.4 -4.25873 | opp_overlap 1295679 1295692, overlap 1295690 AATTGCATAAAAAAA CTGCCC AAAAAA GGGCAG TATTTTTTATGCAAG TERM 1470 1295709 - 1295692 - R 100 -8.4 -5.63504 | opp_overlap 1295692 1295690, overlap 1295679 AATTGCATAAAAAAA CTGCCC AAAAAA GGGCAG TATTTTTTATGCAAG Cthe_1089 1296017 - 1295751 - | stage V sporulation protein S Cthe_1090 1296965 - 1296183 - | hypothetical protein TERM 1471 1296217 - 1296232 + g 83 -6.1 -5.17353 | TATATTCTTTCTATA CCGGT CGTCTT ACCGG TTTTTTCATCAATCT TERM 1472 1297072 - 1297043 - R 100 -18.1 -3.95071 | opp_overlap 1297051, overlap 1297051 TAAACTCTTAAATAA CACAAAAAGCGTG AGTC CACGCTTTTTGTG CAGAAAATATCCAAA TERM 1473 1297064 - 1297051 - R 93 -8.1 -5.23765 | opp_overlap 1297051, overlap 1297043 TAAATAACACAAAAA GCGTG AGTC CACGC TTTTTGTGCAGAAAA TERM 1474 1297051 - 1297064 + r 90 -8.1 -4.82901 | opp_overlap 1297043 1297051 TAAATAACACAAAAA GCGTG AGTC CACGC TTTTTGTGCAGAAAA Cthe_1091 1298664 - 1297090 - | metal dependent phosphohydrolase TERM 1475 1298369 - 1298381 + g 77 -7.7 -4.28187 | TGAACAAGTCTTCTC TCCAG ACG CTGGA TTTCATTTCTTCTTT TERM 1476 1298616 - 1298594 - G 83 -12.2 -3.10641 | opp_overlap 1298593 1298592, overlap 1298586 1298598 1298606 TAACTTATTACTGAA GCAATAATTG AAG CAATTATTGC AATTACTATACCTGT Cthe_1092 1299459 - 1298782 - | hypothetical protein Cthe_1093 1300411 - 1299554 - | methenyltetrahydrofolate cyclohydrolase Cthe_1094 1302439 - 1300520 - | hypothetical protein Cthe_1095 1304957 - 1302531 - | cell divisionFtsK/SpoIIIE TERM 1477 1302758 - 1302771 + g 84 -2.3 -5.70761 | GAAGCTCGTCATTGT CACCG GGGT CGCTG TTTTTGTTTTCTTTT Cthe_1096 1305355 - 1305131 - | hypothetical protein Cthe_1097 1306125 - 1305352 - | ATP-dependent Clp protease proteolytic subunit ClpP TERM 1478 1306204 - 1306229 + r 71 -7.7 -3.52113 | opp_overlap 1306204, overlap 1306202 ATACTCAACAAAAAA GTTCTGCAT ATATTTTC ATGCAGAAC TCTTTATGAGCAGAT TERM 1479 1306229 - 1306204 - R 100 -8.4 -5.49234 | opp_overlap 1306204 1306202 ATACTCAACAAAAAA GTTCTGCATA TATTTT CATGCAGAAC TCTTTATGAGCAGAT Cthe_1098 1307565 - 1306276 - | hypothetical protein Cthe_1099 1310142 - 1307593 - | hypothetical protein TERM 1480 1308263 - 1308277 + g 75 -2.9 -5.1925 | GCAAGAAGCTGAGTA TAATC CAAAA GATTA TTTTTTACATTGTCG TERM 1481 1308762 - 1308746 - G 70 -5.9 -4.4784 | CAAAGCTGAAATAAA TTAAACG GGC CGTTCAA ATACGCAGCGGATAA TERM 1482 1308876 - 1308863 - G 71 -5.3 -4.59109 | opp_overlap 1308848 1308846 1308845 TACATTTTGTAAAAA GGTAT CCTT ATACC GTTGGGATCTTCGTA TERM 1483 1309680 - 1309667 - G 71 -6.7 -4.11216 | TTGGGATTGTTAAAA GAAGC TTCC GCTTC GATACCGATTACGAC Cthe_1100 1310740 - 1310219 - | prepilin-type cleavage/methylation Cthe_1101 1312078 - 1310786 - | hypothetical protein TERM 1484 1311714 - 1311726 + g 83 -3.4 -5.60993 | GCATTCTTATCATCT TTGG AGTTA CCAA TTTTTTTCTCAGCCG Cthe_1102 1312629 - 1312078 - | fimbrial assembly protein Cthe_1103 1313221 - 1312655 - | prepilin-type cleavage/methylation TERM 1485 1313300 - 1313265 - R 100 -15.4 -3.85698 | opp_overlap 1313267 1313270, overlap 1313266 TGCTCGGCTTATAAA TCCTTTCCCGGTCGGC ACAA GCCGACCGGGATAAGT TAAATATGTATAGCT TERM 1486 1313299 - 1313266 - R 100 -18.9 -2.91276 | opp_overlap 1313267 1313270, overlap 1313265 GCTCGGCTTATAAAT CCTTTCCCGGTCGGC ACAA GCCGACCGGGATAAG TTAAATATGTATAGC TERM 1487 1313267 - 1313299 + r 100 -18.6 -3.17797 | gap 1, opp_overlap 1313266 1313265, overlap 1313270 CTCGGCTTATAAATC CTT-TCCCGGTCGGC ACAA GCCGACCGGGATAAG TTAAATATGTATAGC TERM 1488 1313270 - 1313295 + r 100 -20.5 -2.56571 | opp_overlap 1313266 1313265, overlap 1313267 GGCTTATAAATCCTT TCCCGGTCGGC ACAA GCCGACCGGGA TAAGTTAAATATGTA Cthe_1104 1313861 - 1313331 - | prepilin-type cleavage/methylation Cthe_1105 1315232 - 1314018 - | type II secretion system protein Cthe_1106 1316746 - 1315691 - | twitching motility protein Cthe_1107 1319125 - 1316762 - | type II secretion system protein E TERM 1489 1317936 - 1317897 - G 70 -8.8 -3.41024 | opp_overlap 1317895 1317892, overlap 1317895 1317901 TTCTGGAAGATAATA TTAACCATCTTGACAATG GGGG CATTTTCAAGATCGCTAA TGTCAATTGTTGTAT TERM 1490 1318381 - 1318402 + g 78 -2.9 -5.43414 | opp_overlap 1318381, overlap 1318399 CTTGCTTTACTAAAA TCTGACCGA TAAG TCCGCCAGA TTTTTTCTGTATACT Cthe_1108 1319669 - 1319451 - | hypothetical protein TERM 1491 1320408 - 1320355 - R 77 -7.6 -4.09685 | gap 1, opp_overlap 1320361, overlap 1320361 TTTCACCTGTTAAAA TGCAAA-CCCCGCAGCAAATGAAGA TTTCT CCTGCATCTACTGCGAGGTTTTGGA ACGGACTATATTTTT TERM 1492 1320401 - 1320361 - R 90 -11.2 -3.92659 | opp_overlap 1320361, overlap 1320355 CTGTTAAAATGCAAA CCCCGCAGCAAATGAAGA TTTCT CCTGCATCTACTGCGAGG TTTTGGAACGGACTA Cthe_1109 1321319 - 1320465 - | permease Cthe_1110 1321829 - 1321428 - | protein tyrosine phosphatase Cthe_1111 1322891 - 1321854 - | bile acid:sodium symporter TERM 1493 1322626 - 1322614 - G 77 -7.7 -4.18802 | opp_overlap 1322613 AGATACATTGTAAAA GGCTT GAT AAGCC AGTTTGTTACACAAG Cthe_1112 1323443 - 1323045 - | ArsR family transcriptional regulator TERM 1494 1323972 - 1323952 - R 70 -3.9 -4.99134 | opp_overlap 1323952 AGGTGAAAGGAAAAA GGGATAAGG TTG CATTTTCCC ATGTTCTTTTTCTAA TERM 1495 1324715 - 1324662 - R 77 -7.6 -4.09685 | gap 1, opp_overlap 1324668 1324669, overlap 1324668 1324669 TTTCACCTGTTAAAA TGCAAA-CCCCGCAGCAAATGAAGA TTTCT CCTGCATCTGCTACGGGATTTTGGA ACGGACTTTATTTTT TERM 1496 1324708 - 1324668 - R 90 -11.2 -3.92659 | opp_overlap 1324668 1324669, overlap 1324662 1324669 CTGTTAAAATGCAAA CCCCGCAGCAAATGAAGA TTTCT CCTGCATCTGCTACGGGA TTTTGGAACGGACTT TERM 1497 1324707 - 1324669 - R 90 -12.5 -2.95113 | opp_overlap 1324669 1324668, overlap 1324668 1324662 TGTTAAAATGCAAAC CCCGCAGCAAATGAAGA TTTCT CCTGCATCTGCTACGGG ATTTTGGAACGGACT TERM 1498 1325224 - 1325184 - R 100 -11.2 -4.83243 | opp_overlap 1325184 1325185, overlap 1325185 CTTACAGAAAACAAA CCCCGCAGCAAATGAAGA TTTCT CCTGCATCTGCTACGGGA TTTTGGAACGAACTT TERM 1499 1325223 - 1325185 - R 91 -12.5 -3.48861 | opp_overlap 1325185 1325184, overlap 1325184 TTACAGAAAACAAAC CCCGCAGCAAATGAAGA TTTCT CCTGCATCTGCTACGGG ATTTTGGAACGAACT Cthe_1113 1327291 - 1325435 - | SecC motif-containing protein TERM 1500 1326562 - 1326578 + g 71 -3.7 -4.98616 | overlap 1326568 1326569 CTTGAATTTCTTTAG CCATTTT GAA AAATTGG TTTTTCGTCTTTTCA Cthe_1114 1329258 - 1327372 - | Tn7-like transposition protein D TERM 1501 1328210 - 1328198 - G 85 -5.5 -5.24416 | opp_overlap 1328198 CAAGTACAAGAAAAA GTCCC AAC AGGAC ATTTTGAATCCGTAC Cthe_1115 1330919 - 1329264 - | Tn7-like transposition protein C TERM 1502 1329610 - 1329622 + g 74 -6.3 -4.32436 | TCTTTTTTCTTTTGC TGCTT TTG AAGCA TTTTCATCCTCATGT Cthe_1116 1333077 - 1330912 - | HMG-I and HMG-Y, DNA-binding TERM 1503 1331150 - 1331160 + g 71 -4 -4.92363 | TCATTTGATTTTTCT TCTT TAA AAGA TTTTTCTGCCTCTTT Cthe_1117 1333919 - 1333074 - | Tn7-like transposition protein A TERM 1504 1334057 - 1334047 - R 81 -3.2 -5.80003 | TGAATAAATAAAAAA TGCC ATC GACA TCAGTTGGACACCTC TERM 1505 1334430 - 1334460 + r 93 -8.4 -5.23316 | opp_overlap 1334430 AAAAAATAAGAAAAA GGTTTTGGTAGGCT TAA AATCTACTAAAACC TTTTTTACTATAGTC TERM 1506 1334460 - 1334430 - R 93 -6.2 -5.54403 | opp_overlap 1334430 AAAAAATAAGAAAAA GGTTTTGGTAGGCT TAA AATCTACTAAAACC TTTTTTACTATAGTC Cthe_1118 1335353 - 1334484 - | hypothetical protein Cthe_1119 1336144 - 1335350 - | hypothetical protein TERM 1507 1336020 - 1336005 - G 72 -4.7 -4.74706 | TTTAATACCGAAAAA GACAG TTTATC CTGTC CCGTTACCCTCGACT Cthe_1120 1336532 - 1336158 - | hypothetical protein TERM 1508 1336583 - 1336607 + r 100 -11.7 -4.2361 | opp_overlap 1336582 1336581 1336579 GTAAAAAAAGATACG GTTTGTAAAAA ATA TTTTTACAAAC TTTTGAGGTTATCTT TERM 1509 1336689 - 1336646 - R 71 -8.4 -3.33009 | gap 1, opp_overlap 1336653, overlap 1336636 1336653 TAAAATTTTCTATAA GAAAAAAGCATCGGCA-GAAT TTA ATTCCTGCTAATGCCTTTTCC CTATTGCCTAATGAA TERM 1510 1336682 - 1336653 - R 85 -5.1 -5.55769 | gap 1, opp_overlap 1336653, overlap 1336646 TTCTATAAGAAAAAA GCATCGGCA-GAAT TTA ATTCCTGCTAATGC CTTTTCCCTATTGCC Cthe_1121 1336978 - 1336697 - | hypothetical protein Cthe_1122 1337176 - 1336979 - | hypothetical protein Cthe_1123 1338523 - 1337687 - | hypothetical protein Cthe_1124 1339555 - 1338776 - | PhzF family phenazine biosynthesis protein TERM 1511 1340025 - 1340005 - R 79 -8.4 -3.99275 | opp_overlap 1340004 1340008, overlap 1339998 1340001 1340008 TTACATAACATTAAA GAATGACT TTACC AGTCATTC CATTCGTTAAACCCT Cthe_1125 1340231 - 1340013 - | hypothetical protein TERM 1512 1340764 - 1340731 - R 82 -7.6 -4.64676 | opp_overlap 1340731 TTATCCTCAATAAAA GGGTTTTAGCAG CCCGAATTAT CTACTAAAACCC TTTTATCCCTATAAT Cthe_1126 1341273 - 1340800 - | hypothetical protein TERM 1513 1341553 - 1341571 + H 74 -3.2 -5.32699 | AATTTTTATATGTTT TTTAGGTT GAT AACATAAA TTTTTTGATATTTGC TERM 1514 1341695 - 1341746 + H 100 -32 -4.28548 | opp_overlap 1341695 1341702 1341705 TCATAATTTCTAAAA GGAGAAACAATAAGAACCCACCCC AATA GGGGTGGGGTCTTATTGTTTCTCC TTTTGATAAATACCT TERM 1515 1341746 - 1341695 - H 100 -32 -4.1585 | opp_overlap 1341695, overlap 1341702 1341705 TCATAATTTCTAAAA GGAGAAACAATAAGAACCCACCCC AATA GGGGTGGGGTCTTATTGTTTCTCC TTTTGATAAATACCT TERM 1516 1341739 - 1341702 - H 100 -21.5 -4.208 | opp_overlap 1341695, overlap 1341695 1341705 TTCTAAAAGGAGAAA CAATAAGAACCCACCCC AATA GGGGTGGGGTCTTATTG TTTCTCCTTTTGATA TERM 1517 1341736 - 1341705 - H 100 -17.4 -4.2092 | opp_overlap 1341695, overlap 1341702 1341695 TAAAAGGAGAAACAA TAAGAACCCACCCC AATA GGGGTGGGGTCTTA TTGTTTCTCCTTTTG Cthe_1127 1342013 - 1342918 + | phage integrase TERM 1518 1342947 - 1342931 - T 82 -5.1 -5.43866 | opp_overlap 1342931 1342922 TAAGGCTTAAAAAAA CAGGC TCATTTT GCCTG TTTTTTTGCTATCTA TERM 1519 1342931 - 1342947 + T 85 -5.1 -5.60864 | opp_overlap 1342931, overlap 1342922 TAAGGCTTAAAAAAA CAGGC TCATTTT GCCTG TTTTTTTGCTATCTA Cthe_1128 1344011 - 1343625 - | hypothetical protein Cthe_1129 1344091 - 1344426 + | hypothetical protein TERM 1520 1344490 - 1344544 + F 91 -5.3 -5.75538 | gap 2, opp_overlap 1344508, overlap 1344486 CGACACAGATGGAGA GCATATTCTCTTT-A-TACAGCCAG ATTAATG CTGGCAGTAATTAAGGAGGATGTGC TTTTTATTTTTTACA TERM 1521 1344654 - 1344644 - f 70 -4 -5.07523 | opp_overlap 1344644 TATATATAAAGAAAA CAAT CAT ATTG TAATTATTATTGGTA TERM 1522 1345064 - 1345050 - g 85 -7.2 -4.91109 | TTCCTACCATAAAAA CTTTCT TGG AGAAAG TAAAACTTGAGATGT Cthe_1130 1344785 - 1345090 + | hypothetical protein TERM 1523 1345122 - 1345096 - T 100 -11 -4.66987 | opp_overlap 1345096 1345099 1345099 CATATCCTAACAAAA TAAGGCTTTGTA GGA TACATAGCCTTA TCCCCAAAGCCTTAT TERM 1524 1345099 - 1345119 + T 71 -8.3 -3.28791 | opp_overlap 1345096, overlap 1345099 1345096 ATCCTAACAAAATAA GGCTTTGTA GGA TACATAGCC TTATCCCCAAAGCCT Cthe_1131 1345450 - 1345163 - | hypothetical protein Cthe_1132 1346324 - 1345596 - | hypothetical protein TERM 1525 1346547 - 1346490 - R 100 -12.1 -4.40311 | opp_overlap 1346483, overlap 1346483 1346480 1346537 ATAAATAAGTGAAAA GGCACATCTCCCTTTCGCTTAATTCCA GTTG TGAAACTGGCCGTAAAGGAGATGTGCC TCCGTCAGTATCTTT Cthe_1133 1347092 - 1346577 - | hypothetical protein Cthe_1134 1347868 - 1347428 - | hypothetical protein Cthe_1135 1348869 - 1347895 - | SEFIR domain-containing protein Cthe_1136 1350409 - 1348949 - | TPR repeat-containing serine/threonin protein kinase TERM 1526 1349226 - 1349236 + g 70 -3.2 -4.85177 | AAGTCATCTGGATTC CTTG ATA CGAG TTTTTCATATACTTT Cthe_1137 1351053 - 1350412 - | hypothetical protein Cthe_1138 1352731 - 1351046 - | hypothetical protein TERM 1527 1352003 - 1352013 + g 81 -5.4 -5.17507 | TTTTATTCCACCACC TGCA TTC TGCA TTTTTATTAAATTTT Cthe_1139 1353910 - 1352750 - | hypothetical protein TERM 1528 1353085 - 1353098 + g 70 -8.1 -3.65738 | opp_overlap 1353082 CATCTCGTAAAGTTT CAGGC TCCA GCCTG TTATCCTTATTTAAT TERM 1529 1353551 - 1353517 - G 78 -11 -2.95884 | opp_overlap 1353516 1353515, overlap 1353520 CCATTAAGTCAGACA GGAGTTTATAGACATT GAT AATATCTATAAACTTC AACTTTTTCTGATTA TERM 1530 1353548 - 1353520 - G 79 -11.3 -2.71322 | opp_overlap 1353516 1353515, overlap 1353517 TTAAGTCAGACAGGA GTTTATAGACATT GAT AATATCTATAAAC TTCAACTTTTTCTGA Cthe_1140 1354697 - 1353897 - | hypothetical protein TERM 1531 1354269 - 1354303 + g 90 -13 -2.55205 | opp_overlap 1354278, overlap 1354267 1354278 CTGAATCATTTTATA GTCCAATAACGGTAGT GTG ACTACCGTTATCAGAC CTGTTCCTGTATTCT TERM 1532 1354278 - 1354294 + g 80 -10.9 -3.31248 | opp_overlap 1354278, overlap 1354269 1354267 TTTATAGTCCAATAA CGGTAGT GTG ACTACCG TTATCAGACCTGTTC TERM 1533 1354294 - 1354278 - G 83 -10.9 -3.66844 | opp_overlap 1354278 1354269 1354267 TTTATAGTCCAATAA CGGTAGT GTG ACTACCG TTATCAGACCTGTTC Cthe_1141 1358758 - 1354697 - | hypothetical protein Cthe_1142 1359825 - 1358770 - | hypothetical protein TERM 1534 1359687 - 1359712 + g 71 -6.2 -4.22314 | CGCTCTCGTCAACCT TATAGCCAAG ATAATC CCTGGCTATA TCTTTTTTACTGCTG Cthe_1143 1360877 - 1359822 - | hypothetical protein Cthe_1144 1362332 - 1360911 - | restriction modification system DNA specificity subunit TERM 1535 1361950 - 1361972 + g 73 -7.1 -4.09805 | gap 1, opp_overlap 1361948 1361950 1361953 TTACTTGGTACAACA GCA-GCAGAA CCTA TTCTGCCTGC TTTAGTTATTAATAC Cthe_1145 1364230 - 1362344 - | N-6 DNA methylase Cthe_1146 1364606 - 1364244 - | hypothetical protein Cthe_1147 1364861 - 1364622 - | hypothetical protein Cthe_1148 1366150 - 1364867 - | hypothetical protein TERM 1536 1364936 - 1364949 + g 77 -5.3 -4.86862 | TTCTTCCAAACTACT TTCCA GTCT TGGAA TTTTGATTTTTTCAA TERM 1537 1365077 - 1365050 - G 76 -3.6 -5.27335 | gap 1 CTGTTTAAACAAAAA CAGAAGATAGTAA GGA TTAAT-TCTTCTG GGGACCAAGTTATAT TERM 1538 1366303 - 1366268 - R 100 -9.9 -5.26119 | opp_overlap 1366271 1366274 TCTCTAAAAATAAAA CAAGAAGCACATACC TACTAG GGTATATGCTCCTTA TCAGTCCATATCTTT Cthe_1149 1366682 - 1366338 - | hypothetical protein TERM 1539 1366745 - 1366788 + r 100 -12 -4.32951 | overlap 1366738 1366746 TTAAATAGTCTTAGT TTGAGAGTTCATATGAGA AGAATTGG TCTCTTATGAACTCTCAG TTTATTAGTTGCAAT TERM 1540 1366746 - 1366787 + r 100 -13.3 -3.19048 | overlap 1366738 1366745 TAAATAGTCTTAGTT TGAGAGTTCATATGAGA AGAATTGG TCTCTTATGAACTCTCA GTTTATTAGTTGCAA Cthe_1150 1367891 - 1366806 - | hypothetical protein TERM 1541 1368467 - 1368444 - R 100 -7.5 -5.7946 | opp_overlap 1368444 TTGGCAATAAAAAAA CTGCCTACT AATTTG AGTAGACAG TTACTTAGAAGAAAG TERM 1542 1368783 - 1368746 - R 95 -8.5 -5.28481 | gap 1, opp_overlap 1368745 1368746 CATCTAACCAAAAAA GGCTGCCAGATTAGCCTA CTA TCAGC-AATCTGTCAGCC ATATTTTTTACCACT Cthe_1151 1369870 - 1368803 - | hypothetical protein Cthe_1152 1370193 - 1370831 + | hypothetical protein Cthe_1153 1371797 - 1370898 - | diguanylate cyclase Cthe_1154 1371893 - 1372147 + | XRE family transcriptional regulator TERM 1543 1372152 - 1372168 + T 73 -8.1 -3.50045 | opp_overlap 1372149 TAGAAAAATAACTTT TGTTCTA ATA TAGAACA TTATAATATATACCT TERM 1544 1372337 - 1372302 - T 81 -4 -5.68039 | overlap 1372332 AAATGCATAAAAAAA CACCTCTCCTCTGC GTTGTGCA GTATAGGAGAAGTG TGACACCTTCGGCTG Cthe_1155 1372688 - 1372398 - | hypothetical protein Cthe_1156 1373054 - 1375117 + | zinc finger, CHC2-type TERM 1545 1375167 - 1375155 - f 75 -2.7 -5.63103 | overlap 1375156 TTTTAATCAAAAAAA CTTGA CTT TCAAA ACCATAATTCTGTAT Cthe_1157 1375216 - 1375503 + | hypothetical protein TERM 1546 1375524 - 1375548 + T 100 -8.6 -5.74684 | overlap 1375525 CTGAATAACATTTTA AGGCTTTCAG ATTCG CTGAAAGCCA TTTTTATTTTTGTTA TERM 1547 1375525 - 1375547 + T 100 -12.1 -4.0115 | overlap 1375524 TGAATAACATTTTAA GGCTTTCAG ATTCG CTGAAAGCC ATTTTTATTTTTGTT TERM 1548 1375915 - 1375868 - T 100 -15.9 -4.4017 | overlap 1375857 1375873 TTAATTTGTATAAAA CAAAATAGGGAAAGAAACCGC AACAAA GCAATCTCTTCCCCTATTTTG CCCGTTTGCCAACTA TERM 1549 1375910 - 1375873 - T 100 -10 -5.18371 | overlap 1375868 TTGTATAAAACAAAA TAGGGAAAGAAACCGC AACAAA GCAATCTCTTCCCCTA TTTTGCCCGTTTGCC TERM 1550 1376201 - 1376178 - T 100 -6.8 -5.60689 | gap 1, opp_overlap 1376178 TTATACAAGAAAAAA GCAG-GAAGTC TTA AACTTCACTGC TTATAAAGGTTAAAG Cthe_1158 1376508 - 1376218 - | hypothetical protein Cthe_1159 1377424 - 1376513 - | hypothetical protein TERM 1551 1377540 - 1377517 - H 84 -5.3 -5.40072 | opp_overlap 1377508, overlap 1377518 TGTTTTGCAAAAAAA TTGCTTACC TGAATT GGTAAGCAT AATAAAAATATAAAC TERM 1552 1377539 - 1377518 - H 79 -8.8 -3.83561 | opp_overlap 1377508, overlap 1377517 GTTTTGCAAAAAAAT TGCTTACC TGAATT GGTAAGCA TAATAAAAATATAAA Cthe_1160 1377959 - 1378375 + | S23 ribosomal protein TERM 1553 1378698 - 1378672 - T 70 -8.1 -3.10112 | opp_overlap 1378672 1378675, overlap 1378675 AGTTAAGCGATTTAA CAACGGAGT TATTCTAAC ACTCCGTTG TTCTTAGTATTCTTA TERM 1554 1378672 - 1378698 + T 77 -8.1 -3.85878 | opp_overlap 1378672 1378675, overlap 1378675 AGTTAAGCGATTTAA CAACGGAGT TATTCTAAC ACTCCGTTG TTCTTAGTATTCTTA Cthe_1161 1381238 - 1378836 - | hypothetical protein TERM 1555 1379834 - 1379858 + g 100 -7.3 -5.63517 | opp_overlap 1379841, overlap 1379836 GGCGAACCAATTCCT CATAAAATTGC TTA GCAATTTTATA TTTTTTATTTAAAAG TERM 1556 1379836 - 1379856 + g 90 -9.9 -4.45696 | opp_overlap 1379841, overlap 1379834 CGAACCAATTCCTCA TAAAATTGC TTA GCAATTTTA TATTTTTTATTTAAA TERM 1557 1379851 - 1379841 - G 70 -5.4 -4.386 | opp_overlap 1379836 1379834 CAATTCCTCATAAAA TTGC TTA GCAA TTTTATATTTTTTAT TERM 1558 1381721 - 1381766 + r 100 -10.1 -5.39681 | gap 1, opp_overlap 1381725, overlap 1381722 1381725 CATCCTTTTTATAAA TA-AATCCTTTGTAATCTACTT ATC ATGCAGATTACAAAGGATTATA TTTTTCTTTCCTTAT TERM 1559 1381722 - 1381764 + r 100 -10.8 -4.30791 | opp_overlap 1381725, overlap 1381721 1381725 ATCCTTTTTATAAAT AAATCCTTTGTAATCTACTT ATC ATGCAGATTACAAAGGATTA TATTTTTCTTTCCTT TERM 1560 1381761 - 1381725 - R 100 -14.7 -4.55295 | opp_overlap 1381725 1381722 1381721 CTTTTTATAAATAAA TCCTTTGTAATCTACTT ATC ATGCAGATTACAAAGGA TTATATTTTTCTTTC TERM 1561 1381725 - 1381761 + r 100 -12.5 -4.22352 | opp_overlap 1381725, overlap 1381722 1381721 CTTTTTATAAATAAA TCCTTTGTAATCTACTT ATC ATGCAGATTACAAAGGA TTATATTTTTCTTTC TERM 1562 1382424 - 1382384 - R 100 -11.2 -4.83243 | opp_overlap 1382384 1382385, overlap 1382385 CTTACAGAAAACAAA CCCCGCAGCAAATGAAGA TTTCT CCTGCATCTGCTACGGGA TTTTGGAACGAACTT TERM 1563 1382423 - 1382385 - R 91 -12.5 -3.48861 | opp_overlap 1382384 1382385, overlap 1382384 TTACAGAAAACAAAC CCCGCAGCAAATGAAGA TTTCT CCTGCATCTGCTACGGG ATTTTGGAACGAACT TERM 1564 1384007 - 1383954 - R 77 -7.6 -4.09685 | gap 1, opp_overlap 1383960 1383961, overlap 1383960 1383961 TTTCACCTGTTAAAA TGCAAA-CCCCGCAGCAAATGAAGA TTTCT CCTGCATCTGCTACGGGATTTTGGA ACGAACTTTATTTTT TERM 1565 1384000 - 1383960 - R 90 -11.2 -3.92659 | opp_overlap 1383960 1383961, overlap 1383954 1383961 CTGTTAAAATGCAAA CCCCGCAGCAAATGAAGA TTTCT CCTGCATCTGCTACGGGA TTTTGGAACGAACTT TERM 1566 1383999 - 1383961 - R 90 -12.5 -2.95113 | opp_overlap 1383960 1383961, overlap 1383960 1383954 TGTTAAAATGCAAAC CCCGCAGCAAATGAAGA TTTCT CCTGCATCTGCTACGGG ATTTTGGAACGAACT Cthe_1162 1385919 - 1384096 - | D-fructose-6-phosphate amidotransferase TERM 1567 1384529 - 1384554 + g 71 -6.3 -4.26393 | ATAAAGAAAATACTC TTTGCATTATA GTGC TGTGATGCAAA TTTCTGTATTATATC TERM 1568 1386313 - 1386325 + r 72 -3.5 -5.14894 | opp_overlap 1386313 TGTAGTATAATCAAC TTAAA TTA TTTAA TTTTTATCATTTTTT Cthe_1163 1387730 - 1386381 - | phosphoglucosamine mutase Cthe_1164 1389526 - 1387940 - | FAD dependent oxidoreductase TERM 1569 1389225 - 1389196 - G 72 -9.3 -3.28712 | opp_overlap 1389217, overlap 1389199 1389209 CGTTTTGGGCCAGAA CAAGCCCTGCAAA CAGA CCTGCAGGACCTG AGCCGATAACCACAG Cthe_1165 1390754 - 1389543 - | YbbR-like protein Cthe_1166 1391629 - 1390751 - | hypothetical protein Cthe_1167 1392639 - 1391755 - | radical SAM family protein Cthe_1168 1394024 - 1392636 - | hypothetical protein TERM 1570 1394303 - 1394326 + r 75 -2.6 -5.61824 | opp_overlap 1394294 1394303 1394310, overlap 1394294 1394293 1394310 TACAATTTAATAATA TATTAAGTTA ATTT TAAATTAATA TTTTTTTGAATTTTA TERM 1571 1394803 - 1394823 + r 71 -7.7 -3.41445 | overlap 1394801 1394804 ATTTTATCACCTTAA TTGTACATA CAA TATGTACAG TGTTTCCAAATTTTT TERM 1572 1394804 - 1394822 + r 72 -9 -2.63783 | overlap 1394803 1394801 TTTTATCACCTTAAT TGTACATA CAA TATGTACA GTGTTTCCAAATTTT Cthe_1169 1395989 - 1394838 - | Beta-lactamase class A-like protein TERM 1573 1396118 - 1396086 - R 76 -3.6 -5.41143 | opp_overlap 1396090, overlap 1396090 CAGTTCGCAAAAAAA TA-AAGCTGTGGAGCA TTA TGC-CCATAGCTTGTA TTCAGAACAGAAACA TERM 1574 1396090 - 1396113 + r 75 -8.2 -3.65812 | gap 1, opp_overlap 1396086 1396090 TCGCAAAAAAATAAA GCTGTGGAGCA TTA TGC-CCATAGC TTGTATTCAGAACAG TERM 1575 1396113 - 1396090 - R 83 -6 -5.20328 | gap 1, opp_overlap 1396090, overlap 1396086 TCGCAAAAAAATAAA GCTGTGGAGCA TTA TGC-CCATAGC TTGTATTCAGAACAG Cthe_1170 1397068 - 1396193 - | dihydrodipicolinate reductase TERM 1576 1397195 - 1397174 - R 100 -11.6 -4.18802 | opp_overlap 1397173 ATATATATGTTAAAA GCCGCAGA GAAGCT TCTGCGGC CTGATTAACATACAA Cthe_1171 1398914 - 1397667 - | Serine-type D-Ala-D-Ala carboxypeptidase Cthe_1172 1399482 - 1400630 + | hypothetical protein Cthe_1173 1401294 - 1400647 - | type IV pilus assembly PilZ TERM 1577 1402127 - 1402112 - g 70 -3.2 -5.00616 | TGGCCCTGGAAAAAA CCGAAG AGCA CCTCAG CACAATCCTGGACAC Cthe_1174 1401682 - 1402506 + | hypothetical protein Cthe_1175 1402529 - 1403338 + | hypothetical protein TERM 1578 1403430 - 1403390 - T 100 -13.5 -5.35365 | opp_overlap 1403394 1403396 AAAAGATAATAAAAA GAAAGATGGAGAAAACG AATTACA CGTTTTCCCCATCTTGC GTGAGACTTTTTTGG TERM 1579 1403394 - 1403426 + T 83 -10.7 -3.07575 | opp_overlap 1403390, overlap 1403396 GATAATAAAAAGAAA GATGGAGAAAACG AATTACA CGTTTTCCCCATC TTGCGTGAGACTTTT TERM 1580 1403697 - 1403682 - T 75 -4.7 -5.06451 | opp_overlap 1403694, overlap 1403692 TATCAGGTCAAAAAA TCGCT TAAAAC AGCGA AGCCCGCATAAAGAA TERM 1581 1403735 - 1403692 - T 100 -25.6 -4.14615 | opp_overlap 1403694 1403699, overlap 1403682 AAAAATCGCTTAAAA CAGCGAAGCCCGCATAAAGA AGGA CCTTTATGCAGGCTTCGCTG CTATCACAAAGAGGG TERM 1582 1403694 - 1403733 + T 100 -19.5 -2.62184 | opp_overlap 1403682 1403692, overlap 1403699 AAATCGCTTAAAACA GCGAAGCCCGCATAAAG AAGGAC CTTTATGCAGGCTTCGC TGCTATCACAAAGAG TERM 1583 1403699 - 1403728 + T 84 -10.8 -3.11634 | opp_overlap 1403692, overlap 1403694 GCTTAAAACAGCGAA GCCCGCATAAAG AAGGAC CTTTATGCAGGC TTCGCTGCTATCACA Cthe_1176 1404268 - 1403822 - | CheC-like protein Cthe_1177 1406056 - 1404596 - | nicotinate phosphoribosyltransferase TERM 1584 1405056 - 1405071 + g 72 -4.7 -4.6902 | AGTTTATATACTCCT CCGAA AACAGG TTCGG TTTTTGAAGTTATCA TERM 1585 1405434 - 1405423 - G 79 -5.8 -4.8622 | GCTCCGAAGGAAAAA GCTG AACC CAGC TGTGAGCCATTGTAC Cthe_1178 1406793 - 1406068 - | isochorismatase hydrolase TERM 1586 1406332 - 1406356 + g 85 -2.9 -5.71712 | overlap 1406321 CCACTTTCTGAAAGC TTCTTCCAA AAATCCG TTGGTAGAA TTTTTTTCTATAAGA TERM 1587 1406375 - 1406386 + g 81 -3 -5.68438 | opp_overlap 1406375 TTTTCTATAAGAGTA TATC CCCC GATA TTTTTTATTTCATCC Cthe_1179 1407103 - 1406909 - | hypothetical protein TERM 1588 1407238 - 1407264 + r 78 -6.8 -4.48583 | opp_overlap 1407245 1407258, overlap 1407258 TTGCCTGTTTCGTAT CTTAATATTTTA TTA TAAAATAATAAG TTTATTATATTCATT TERM 1589 1407633 - 1407662 + r 75 -8.1 -3.64703 | opp_overlap 1407635, overlap 1407635 CGAATTTTTTGAACG AATTTATTTGTGT ACGT ACACAAATAAATC TTTAAATCAGAAAAA TERM 1590 1407635 - 1407660 + r 85 -10.7 -3.40597 | opp_overlap 1407635, overlap 1407633 AATTTTTTGAACGAA TTTATTTGTGT ACGT ACACAAATAAA TCTTTAAATCAGAAA TERM 1591 1407660 - 1407635 - R 83 -10.7 -3.34192 | opp_overlap 1407635 1407633 AATTTTTTGAACGAA TTTATTTGTGT ACGT ACACAAATAAA TCTTTAAATCAGAAA TERM 1592 1407901 - 1407937 + r 90 -3.8 -5.95286 | opp_overlap 1407901 GACAAAAATAAAAAA CTGTTGCAAAACTGAT TGGTC ATGTTTTTTGCAACAG TTTTTTATTTTTACT TERM 1593 1407937 - 1407901 - R 90 -3.8 -5.98675 | opp_overlap 1407901 GACAAAAATAAAAAA CTGTTGCAAAACTGAT TGGTC ATGTTTTTTGCAACAG TTTTTTATTTTTACT Cthe_1180 1408334 - 1407948 - | hypothetical protein Cthe_1181 1410758 - 1408476 - | transglutaminase-like protein Cthe_1182 1412076 - 1410808 - | hypothetical protein Cthe_1183 1413049 - 1412120 - | ATPase TERM 1594 1412464 - 1412477 + g 75 -8.1 -3.97406 | opp_overlap 1412464 CCTGTGTGGTCATAA CAGGC TCAA GCCTG TTTATCGGATTTTCA Cthe_1184 1413865 - 1413197 - | hypothetical protein Cthe_1185 1415160 - 1413880 - | hypothetical protein Cthe_1186 1416092 - 1415157 - | Alpha/beta hydrolase fold-3 TERM 1595 1415658 - 1415624 - G 71 -7.1 -3.95584 | gap 1, opp_overlap 1415624 1415623, overlap 1415597 TTGCCATCAATGAAA CCGCGGCAGC-CAGAT TTCC ACCTGCGCTGTCGCCG ATTAATGTGATATCG Cthe_1187 1416370 - 1417224 + | hypothetical protein TERM 1596 1417272 - 1417261 - g 78 -7.2 -4.43477 | TGCAGGGAATTAAAA CCGC TTTG GCGG TGAGAATGGCATATC Cthe_1188 1417221 - 1418003 + | hypothetical protein TERM 1597 1418460 - 1418470 + G 71 -6.8 -4.02051 | opp_overlap 1418460 TGATTTAATAAAAAA GCCT ACA AGGC TTCTTTCCCTTGGTG TERM 1598 1418470 - 1418460 - g 93 -6.8 -5.4833 | opp_overlap 1418460 TGATTTAATAAAAAA GCCT ACA AGGC TTCTTTCCCTTGGTG TERM 1599 1418928 - 1418907 - g 76 -2.4 -5.42975 | gap 1 CTATATAAATAAAAA CAGCACAAT AAATG ATT-TGCTG GTTCAGTCGCTTCCT Cthe_1189 1418008 - 1418976 + | ABC transporter related protein TERM 1600 1419273 - 1419254 - g 81 -7.2 -4.49389 | ACCGCATAACTAAAA TTGGAGAA CCTT TTCCCCAA ATAAATTTCTGGATT Cthe_1190 1419091 - 1419582 + | hypothetical protein Cthe_1191 1420279 - 1419635 - | HAD family hydrolase TERM 1601 1419715 - 1419702 - G 74 -3.7 -5.08824 | overlap 1419703 TCTTTAGCCAAAAAA TCCGG ATTT CCGGT TAACAGAAGGTCTGC TERM 1602 1420536 - 1420508 - R 78 -6.7 -4.40652 | overlap 1420505 AAGGACACAAAATAA GCCCGGCAA TTGGTGTATTT CTGCCGGGC TTCAGGATTTTAATC Cthe_1192 1421584 - 1420553 - | hypothetical protein TERM 1603 1421688 - 1421676 - H 88 -3.3 -5.92399 | CAATAAAATAAAAAA GGGCA CTG TCCCC AAAAATTTATCGAGA TERM 1604 1422264 - 1422276 + G 73 -7.7 -3.90586 | opp_overlap 1422263 1422264 GAGTGGCAGAAAAGG CCTCT GGG AGAGG TTTATCCGATAGTAT Cthe_1193 1421775 - 1422998 + | transposase, mutator type TERM 1605 1423045 - 1423004 - T 73 -8.2 -3.49777 | opp_overlap 1422999 1423005 1423006, overlap 1423008 GCGTATATAGTATAA TCA-AGGGGTTCAGGGAAAC TCTG GTTTCC-TGAACCCCCCTGT AATATTTTATACGCA TERM 1606 1423005 - 1423044 + T 83 -10.8 -2.98387 | gap 1, opp_overlap 1423004 1423008, overlap 1422999 1423006 CGTATATAGTATAAT CA-AGGGGTTCAGGGAAAC TCT GGTTTCCTGAACCCCCCTG TAATATTTTATACGC TERM 1607 1423006 - 1423042 + T 81 -10.1 -3.03972 | opp_overlap 1423004 1423008, overlap 1423005 1422999 GTATATAGTATAATC AAGGGGTTCAGGGAAAC TCT GGTTTCCTGAACCCCCC TGTAATATTTTATAC TERM 1608 1423040 - 1423008 - T 100 -15.8 -3.49182 | gap 1, opp_overlap 1423006 1423005 1422999, overlap 1423004 ATATAGTATAATCAA GGGGTTCAGGGAAAC TCTG GTTTCC-TGAACCCC CCTGTAATATTTTAT TERM 1609 1423089 - 1423108 + T 83 -8 -4.26188 | opp_overlap 1423092, overlap 1423078 ATTTTTCTTTTGTAA GAATTTCT TATC AGAAATTC TTTTGAATCTATAAA Cthe_1194 1424501 - 1423353 - | hypothetical protein TERM 1610 1424434 - 1424446 + g 71 -6.3 -4.13911 | ATTCCTCTATATGTA GCATA AAT TATGC TTTGATTGTCTTTTG Cthe_1195 1424961 - 1424617 - | hypothetical protein Cthe_1196 1426688 - 1425450 - | hypothetical protein Cthe_1197 1428130 - 1426715 - | hypothetical protein Cthe_1198 1428556 - 1428203 - | hypothetical protein TERM 1611 1428644 - 1428656 + r 72 -3.5 -5.14563 | opp_overlap 1428654, overlap 1428634 1428632 TTCTATATTATTTAG TAATA TAA TATTA TTTTTTCATAAAAAA TERM 1612 1428926 - 1428914 - R 100 -7.7 -5.64421 | overlap 1428919 ATTTTAAATAAAAAA GAGAC TTT GTCTC AAACATTTATCCTCT TERM 1613 1429004 - 1429020 + r 82 -10.9 -2.62616 | TCGAACCGTCGACCC GCGCATT ACG AATGCGC TGCTCTACCAACTGA Cthe_1199 1430431 - 1429136 - | amidohydrolase TERM 1614 1430398 - 1430367 - G 80 -11.6 -2.84171 | opp_overlap 1430368, overlap 1430363 1430364 1430377 ATGCCCAAAAACGCA CCCTGCAACACGTC ATCT GACGCATTGCAGGT AATTATGTCGGCATT TERM 1615 1430368 - 1430397 + g 77 -10.7 -2.89 | opp_overlap 1430363 1430367 1430364 1430377 TGCCCAAAAACGCAC CCTGCAACACGTC ATCT GACGCATTGCAGG TAATTATGTCGGCAT Cthe_1200 1431767 - 1430523 - | adenosylhomocysteinase Cthe_1201 1432598 - 1431771 - | purine nucleoside phosphorylase I, inosine and guanosine-specific Cthe_1202 1433937 - 1432762 - | major facilitator transporter TERM 1616 1433670 - 1433707 + g 84 -6.6 -4.87318 | gap 1, opp_overlap 1433669 GAAACATAAAAATGG CAATGCTGCTGAAAA GCACCAACA TTTTCAGCA-CATTG TTTTTGGATTTTGCC TERM 1617 1434082 - 1434042 - R 100 -11.4 -5.9663 | gap 1, opp_overlap 1434043 1434045, overlap 1434043 1434045 AAACACCAAAAAAAA GCAGCTCTTTCCGACTTCA GCTT TAAAGCCGGAAAAAGCT-C TTTTAACAGATTTTA TERM 1618 1434082 - 1434043 - R 100 -11.6 -4.14318 | opp_overlap 1434043 1434045, overlap 1434042 1434045 AACACCAAAAAAAAG CAGCTCTTTCCGACTTCA GCTT TAAAGCCGGAAAAAGCTC TTTTAACAGATTTTA TERM 1619 1434045 - 1434080 + r 73 -7.6 -3.65832 | opp_overlap 1434042 1434043 1434045, overlap 1434043 CACCAAAAAAAAGCA GCTCTTTCCGACTTCA GCTT TAAAGCCGGAAAAAGC TCTTTTAACAGATTT TERM 1620 1434080 - 1434045 - R 100 -14.2 -3.63095 | opp_overlap 1434045 1434043, overlap 1434042 1434043 CACCAAAAAAAAGCA GCTCTTTCCGACTTCA GCTT TAAAGCCGGAAAAAGC TCTTTTAACAGATTT TERM 1621 1434105 - 1434115 + r 77 -4 -5.33785 | AGATTTTACCCGTCC GTTA AAG TAAC TTTTTTCTGCTCGTT Cthe_1203 1435483 - 1434095 - | hypothetical protein Cthe_1204 1436774 - 1435506 - | hypothetical protein Cthe_1205 1438690 - 1436762 - | putative serine protein kinase, PrkA TERM 1622 1438343 - 1438357 + g 70 -8.6 -3.36276 | ACCGACCGGTCCCAC CAGGTA AAG TACCTG TCTTGCTTCTTCTCC Cthe_1206 1440361 - 1439291 - | integrase catalytic subunit TERM 1623 1439702 - 1439712 + g 74 -4.6 -4.90013 | opp_overlap 1439702 CAAAAGAAACAATAA CTCG TAG CGGG TTTTTCGTTCAGTTA TERM 1624 1441320 - 1441297 - g 87 -6 -5.26875 | CGGTCAAGCAAAAAA GGTTTCCAAA TCTT TCTGGATACC GCCCGTCACGAAAGA Cthe_1207 1440596 - 1442119 + | membrane protein-like protein TERM 1625 1442186 - 1442149 - T 81 -9.9 -3.06341 | gap 1, opp_overlap 1442150 1442151 1442177 1442179, overlap 1442148 1442179 AACATGGCTTAAAAT TGCCGCCGCTTACTGCAA GAG CTGCAGGAAGTGGCGG-A TTTATTGAATCCGCA TERM 1626 1442150 - 1442186 + T 100 -13 -4.20516 | opp_overlap 1442149 1442148 1442179, overlap 1442151 1442177 1442179 ACATGGCTTAAAATT GCCGCCGCTTACTGCA AGAGC TGCAGGAAGTGGCGGA TTTATTGAATCCGCA TERM 1627 1442151 - 1442185 + T 100 -16.5 -3.11988 | opp_overlap 1442149 1442148 1442179, overlap 1442150 1442177 1442179 CATGGCTTAAAATTG CCGCCGCTTACTGCA AGAGC TGCAGGAAGTGGCGG ATTTATTGAATCCGC TERM 1628 1442177 - 1442205 + T 77 -4.5 -5.25893 | opp_overlap 1442149 1442148 1442179, overlap 1442151 1442150 1442179 TGCAAGAGCTGCAGG AAGTGGCGGATTT ATT GAATCCGCAGCTC TTTTTTCATATATCT TERM 1629 1442179 - 1442203 + T 76 -7.1 -4.24891 | opp_overlap 1442149 1442148 1442179, overlap 1442151 1442150 1442177 CAAGAGCTGCAGGAA GTGGCGGATTT ATT GAATCCGCAGC TCTTTTTTCATATAT Cthe_1208 1442772 - 1442410 - | GCN5-related N-acetyltransferase TERM 1630 1443810 - 1443827 + G 85 -8.4 -4.36378 | overlap 1443800 CTTCTGTCCTATATC CGGGAC TGTTTT GTCCCG TTATTTGTATTTTTC Cthe_1209 1443000 - 1444799 + | hypothetical protein TERM 1631 1445375 - 1445365 - g 70 -5.4 -4.33248 | opp_overlap 1445365 GAATCTTAGAAGAAA CAAC ACA GTTG TAATTCAAAATACTT Cthe_1210 1444877 - 1445455 + | hypothetical protein TERM 1632 1445515 - 1445545 + T 100 -18.6 -4.13343 | opp_overlap 1445515 1445519, overlap 1445519 CCCCCACATCTAAAA TAAACCCTGTTTTC TTC GAAAACAGGGTTTA TTTTCAAAACTTTAT TERM 1633 1445545 - 1445515 - T 100 -18.6 -4.2349 | opp_overlap 1445515 1445519, overlap 1445519 CCCCCACATCTAAAA TAAACCCTGTTTTC TTC GAAAACAGGGTTTA TTTTCAAAACTTTAT TERM 1634 1445541 - 1445519 - T 100 -15 -4.70515 | opp_overlap 1445515 1445519, overlap 1445515 CACATCTAAAATAAA CCCTGTTTTC TTC GAAAACAGGG TTTATTTTCAAAACT TERM 1635 1445519 - 1445541 + T 100 -15 -4.65263 | opp_overlap 1445519 1445515, overlap 1445515 CACATCTAAAATAAA CCCTGTTTTC TTC GAAAACAGGG TTTATTTTCAAAACT Cthe_1211 1446967 - 1445603 - | tryptophan synthase subunit beta TERM 1636 1446841 - 1446852 + g 81 -7.2 -4.62336 | opp_overlap 1446841 GTTCGTCCAACGTAA CCGG TTTG CCGG TTTTTGAGCTGAAGT Cthe_1212 1448173 - 1447235 - | hypothetical protein Cthe_1213 1448528 - 1448800 + | hypothetical protein Cthe_1214 1449225 - 1448845 - | hypothetical protein Cthe_1215 1449626 - 1449255 - | permease TERM 1637 1449541 - 1449509 - G 95 -11.3 -4.67038 | overlap 1449513 CTTTCAAAAGCAAAA CCATGGCAGGAACAA CAA TTGTTCCTCCCCCGG AACCGAAAAGACCGT TERM 1638 1449537 - 1449513 - G 79 -11.5 -2.54272 | overlap 1449509 CAAAAGCAAAACCAT GGCAGGAACAA CAA TTGTTCCTCCC CCGGAACCGAAAAGA Cthe_1216 1449927 - 1450226 + | ATP-dependent Clp protease adaptor protein ClpS Cthe_1217 1450289 - 1452619 + | ATP-dependent Clp protease ATP-binding subunit ClpA aat 1452626 - 1453327 + | leucyl/phenylalanyl-tRNA--protein transferase Cthe_1219 1453364 - 1454458 + | hypothetical protein Cthe_1220 1455375 - 1454479 - | hypothetical protein Cthe_1221 1464223 - 1455455 - | glycosyltransferase 36 Cthe_1222 1465240 - 1464437 - | RNA methyltransferase TERM 1639 1464820 - 1464834 + g 88 -11.4 -3.63276 | TGACGCCTGTCATTC CCGCTG CAT CAGCGG TTCTAATTATTGTGC TERM 1640 1465324 - 1465304 - R 100 -7.6 -5.90981 | TTATATCAAAAAAAA GAGAGCCT ATTTA AAGCTCTC CCCTTTTAATTTCAT Cthe_1223 1465740 - 1465387 - | 50S ribosomal protein L20P TERM 1641 1465628 - 1465612 - G 72 -9.5 -3.05644 | opp_overlap 1465610, overlap 1465611 1465614 CCTATAAGCATAAAC CAGTGAT TTC ATCACTG CCTGGTTTGCAATTC Cthe_1224 1465956 - 1465759 - | 50S ribosomal protein L35P TERM 1642 1465986 - 1466010 + r 70 -7.3 -3.57808 | opp_overlap 1465985 1465999, overlap 1465985 1465999 AATTTCTATAATTAC TGTTTAGGATT AAG AATCATAAACA TGTTTCTACCTTCCA Cthe_1225 1466476 - 1465982 - | translation initiation factor 3 TERM 1643 1466572 - 1466551 - R 100 -8.1 -5.53288 | opp_overlap 1466551 TTTAATGCAAAAAAA GTGAATCAT TAAA ATGATCCAC TTATCCCTCACAAAA Cthe_1226 1467251 - 1466748 - | dihydrofolate reductase Cthe_1227 1468095 - 1467265 - | thymidylate synthase thrS 1470517 - 1468610 - | threonyl-tRNA synthetase TERM 1644 1470582 - 1470542 - R 100 -14.2 -3.5032 | opp_overlap 1470547 1470572, overlap 1470547 1470572 CCTTTATACTAAATA GAAAACTCTCATCCCTTA AAAAG CAAGGGACGAGAGTTGTC TCCCGTGGTTCCACC TERM 1645 1470547 - 1470577 + r 80 -9.8 -3.51137 | opp_overlap 1470542 1470547 1470572, overlap 1470572 ATACTAAATAGAAAA CTCTCATCCCTT AAAAAGC AAGGGACGAGAG TTGTCTCCCGTGGTT TERM 1646 1470577 - 1470547 - R 100 -12.7 -4.83032 | opp_overlap 1470547 1470572, overlap 1470542 1470572 ATACTAAATAGAAAA CTCTCATCCCTTA AAAAG CAAGGGACGAGAG TTGTCTCCCGTGGTT TERM 1647 1470863 - 1470844 - R 81 -4.4 -5.37345 | opp_overlap 1470848 GTCAACTATAAAAAA TACATAGA CTTT TCTATATA TGAGTTTAGTTCCAT TERM 1648 1471269 - 1471296 + r 81 -4 -5.66868 | opp_overlap 1471274, overlap 1471272 1471273 GACGGGGAATAACTA GAAAAGCTGGCA TATC TGCCAGCCCATC TTTTTTTCATTCATT TERM 1649 1471291 - 1471274 - R 100 -11.3 -4.61747 | opp_overlap 1471273 1471272 1471269 GGAATAACTAGAAAA GCTGGCA TATC TGCCAGC CCATCTTTTTTTCAT Cthe_1229 1471948 - 1471331 - | spore germination protein-like protein Cthe_1230 1472997 - 1472107 - | helix-hairpin-helix repeat-containing competence protein ComEA TERM 1650 1473938 - 1473922 - g 76 -7.3 -4.2704 | GGTACTACCAATAAA TTGCTGC TCT ACAGCAA CTCAAAATACAAATC TERM 1651 1473992 - 1473971 - g 70 -3 -5.03405 | overlap 1473974 1473975 AACACTATACAAAAA TAACCGGT ATAAAA ACGGGTTA TACCGACAGGGCCCT TERM 1652 1473998 - 1473974 - g 71 -5.1 -4.59846 | overlap 1473971 1473975 ACTATACAAAAATAA CCGGTATAA AAACGGG TTATACCGA CAGGGCCCTTAACAA TERM 1653 1474377 - 1474363 - g 83 -6.4 -5.05782 | ATCGAGGTTAAAAAA GACGGT GTC ACCATC GGAAAAATAGATGCA Cthe_1231 1473277 - 1474575 + | Serine-type D-Ala-D-Ala carboxypeptidase TERM 1654 1474600 - 1474585 - f 75 -2.6 -5.71295 | AGATAAAAACAAAAA GATAAA GAAT TTCATC CACAAATAATATAAT TERM 1655 1474728 - 1474752 + F 74 -7.3 -4.01992 | overlap 1474717 AACTTTTTGCAATTT GCTTTGTAA AATATCG TTACAAAGC TTCTGTTTTAATGTT Cthe_1232 1474841 - 1476571 + | AMP-dependent synthetase and ligase TERM 1656 1477212 - 1477198 - g 70 -2.8 -5.08255 | opp_overlap 1477198 ATTTTCAAAAGAAAA GCAAAA TTT TGTTGC TGTTTTGCTGATTTC TERM 1657 1477214 - 1477235 + G 86 -9.5 -4.01381 | CAAAATTTTGTTGCT GTTTTGCTG ATTT CAGCAGAAC TTATTTCCATTGGAT TERM 1658 1477461 - 1477444 - g 91 -7.7 -5.30686 | gap 1, opp_overlap 1477452 AATATTTACAAAAAA GCTG-GCC ATC GGCTCAGC AGAATATTATTTGAT Cthe_1233 1476986 - 1477525 + | hypothetical protein TERM 1659 1478180 - 1478206 + G 86 -9.6 -4.08216 | opp_overlap 1478178 AATTCGAAGCAACTT CATCGGAAATAT CAG ATATTTCCAATG TTTTAGAAGAACTCA Cthe_1234 1477525 - 1478295 + | methyl-accepting chemotaxis sensory transducer TERM 1660 1478354 - 1478303 - T 100 -14.7 -5.0095 | AAAAATAGAACAAAA TTGCCACTCCAGGCAGAAAATAT TGCAAC ACGTTTTCTGTCTGGAATGGCAA CTCCTAACCGACAAC Cthe_1235 1499034 - 1478377 - | cellulose 1,4-beta-cellobiosidase TERM 1661 1479759 - 1479773 + g 85 -7.2 -4.85267 | TCTCCACCTTTATCA CTGTAA CTT TTACAG TTTTTGATACTTTAT TERM 1662 1480392 - 1480404 + g 70 -7.7 -3.77219 | CTCTCAGGCTGCCTG TGGAC GGT GTCCA TTTAAGTTCAATCCT TERM 1663 1486206 - 1486219 + g 78 -3.8 -5.186 | GTAAATCAAACTCTC CGGT ATAACA ACCG TTTTTATCTGTTTTA TERM 1664 1489483 - 1489499 + g 75 -2.9 -5.29846 | opp_overlap 1489483 TTCAAACTGAGTCAA CAAACCG GAT TGGTTGG TTTTTATTTCAAGTT TERM 1665 1491758 - 1491768 + g 79 -5.4 -4.88258 | AAACGTAACGTTTCT GCAT GCC ATGC TTTTATTATCATTTT Cthe_1236 1499723 - 1499016 - | fibronectin, type III TERM 1666 1500029 - 1500002 - R 100 -10 -5.07941 | gap 1 AAAATCATATAAAAA GCAGGGA-AGTTT ATC AAACCATCCCTGC CAAAAAGTATAAAAC leuS 1502543 - 1500066 - | leucyl-tRNA synthetase TERM 1667 1502410 - 1502386 - G 70 -7.9 -3.67597 | opp_overlap 1502387, overlap 1502387 TCTCCTATGGAATAA TTCCTCACATG TCC CATGTGAAGAT TTCCGGAAGGATAAG TERM 1668 1502387 - 1502409 + g 74 -9.2 -3.53444 | opp_overlap 1502386 1502387 CTCCTATGGAATAAT TCCTCACATG TCC CATGTGAAGA TTTCCGGAAGGATAA TERM 1669 1502409 - 1502387 - G 80 -11.4 -2.80344 | opp_overlap 1502387, overlap 1502386 CTCCTATGGAATAAT TCCTCACATG TCC CATGTGAAGA TTTCCGGAAGGATAA TERM 1670 1502457 - 1502483 + g 75 -5.8 -4.72272 | ATAATATTTCTTTTT GCTTTCGTCTTC CCG GACGGCAAAAGC TTTTTCCTCCAGCCA Cthe_1238 1503001 - 1502660 - | iojap-like protein TERM 1671 1503167 - 1503152 - R 82 -6.2 -5.06414 | TTTTGTGAATAAAAA CTTGAT AAAA ATCAAG GATTAAAGTCATCTC Cthe_1239 1503759 - 1503163 - | hypothetical protein TERM 1672 1503377 - 1503388 + g 81 -3 -5.626 | AGGGTCGTCCTGATT TCTT CTCC AAGA TTTTTTTGTCCGGTA TERM 1673 1503714 - 1503724 + g 83 -3.2 -5.65496 | CAACACTAAAAAAAC CGGA GCC TCTG TTTTTCTTTTTCCTC Cthe_1240 1504357 - 1503788 - | metal dependent phosphohydrolase TERM 1674 1504432 - 1504417 - R 72 -3.4 -5.25656 | opp_overlap 1504417 1504427 AAAAGTATTAAAAAA TTAAAA CATC TTTTAA ATTAATTTTAAAACT Cthe_1241 1505122 - 1504502 - | nicotinate-nucleotide adenylyltransferase TERM 1675 1504943 - 1504959 + g 70 -8.7 -3.36952 | overlap 1504934 ACAGACCATATTGTA CCGATGT TCG GCATCGG TTACTGTCTGATTTT Cthe_1242 1506421 - 1505309 - | integrase catalytic subunit Cthe_1243 1506971 - 1506510 - | GCN5-related N-acetyltransferase TERM 1676 1507773 - 1507762 - g 85 -7.2 -4.84017 | AATCTTCTATAAAAA GCGC CCTT GCGC AAACATATCAAAACA Cthe_1244 1507662 - 1508834 + | glycosyl transferase family protein TERM 1677 1508847 - 1508896 + T 100 -14.7 -2.95116 | gap 1, opp_overlap 1508860, overlap 1508849 1508860 TAGCAAGAAAGTATT TAAAGGATAAAAAGTAAGAGAGCA TTA TGCTCTCCTACTTTTT-TCCTATA TCCTTTCGATAGTGC TERM 1678 1508849 - 1508894 + T 100 -12.9 -3.02591 | gap 1, opp_overlap 1508860, overlap 1508847 1508860 GCAAGAAAGTATTTA AAGGATAAAAAGTAAGAGAGCA TTA TGCTCTCCTACTTTTT-TCCTA TATCCTTTCGATAGT TERM 1679 1508860 - 1508884 + T 100 -11.5 -5.24989 | opp_overlap 1508860, overlap 1508849 1508847 TTTAAAGGATAAAAA GTAAGAGAGCA TTA TGCTCTCCTAC TTTTTTCCTATATCC TERM 1680 1508884 - 1508860 - T 100 -13.7 -5.04325 | opp_overlap 1508860 1508849 1508847 TTTAAAGGATAAAAA GTAAGAGAGCA TTA TGCTCTCCTAC TTTTTTCCTATATCC Cthe_1245 1510140 - 1508881 - | phosphoribosylamine--glycine ligase Cthe_1246 1511709 - 1510165 - | bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase Cthe_1247 1512402 - 1511773 - | phosphoribosylglycinamide formyltransferase Cthe_1248 1513418 - 1512396 - | phosphoribosylformylglycinamidine cyclo-ligase TERM 1681 1513140 - 1513122 - G 72 -4.5 -4.74132 | ATAGTCGAGGAAAAA CAGAGGT TCCGC ACCACTG CACACAATATCATTT Cthe_1249 1514977 - 1513511 - | amidophosphoribosyltransferase TERM 1682 1514189 - 1514199 + g 73 -6.8 -4.20368 | AAGTGCCGTCTTTTC CGGA ACT TCCG TTTGTATTGAAGTCA Cthe_1250 1515549 - 1515028 - | phosphoribosylaminoimidazole carboxylase, catalytic subunit TERM 1683 1515678 - 1515643 - R 100 -17.2 -4.4767 | opp_overlap 1515650, overlap 1515650 TTAGCCATCAGAAAA CATAAAAGTCTGATCC AATC GGATCAAACTTTTATG TGCAATATTCATAGC TERM 1684 1515650 - 1515671 + r 80 -7.3 -4.54449 | opp_overlap 1515643 1515650 TCAGAAAACATAAAA GTCTGATCC AATC GGATCAAAC TTTTATGTGCAATAT TERM 1685 1515671 - 1515650 - R 100 -9.5 -4.94487 | opp_overlap 1515650, overlap 1515643 TCAGAAAACATAAAA GTCTGATCC AATC GGATCAAAC TTTTATGTGCAATAT Cthe_1251 1517084 - 1515687 - | xanthine/uracil/vitamin C permease TERM 1686 1517154 - 1517134 - R 80 -5.3 -5.27938 | overlap 1517135 AGTTTGAAATAAAAA TGGGCTGGC AGA ACCAACCCT CCAAACCGATACAAC TERM 1687 1517153 - 1517135 - R 77 -8.8 -3.75678 | overlap 1517134 GTTTGAAATAAAAAT GGGCTGGC AGA ACCAACCC TCCAAACCGATACAA Cthe_1252 1518464 - 1517379 - | auxin efflux carrier TERM 1688 1517430 - 1517412 - G 76 -7.4 -4.23391 | opp_overlap 1517411 1517423 CAAATAAACCACAAA GGGCATTG TCA CAATCCCC AGTATTGTCGTTATA Cthe_1253 1521298 - 1518716 - | phosphoenolpyruvate synthase Cthe_1254 1521535 - 1521903 + | hypothetical protein Cthe_1255 1522149 - 1522604 + | hypothetical protein TERM 1689 1522793 - 1522807 + T 79 -7.2 -4.41087 | TCATGTTTTTTACAT GCAAAA GTT TTTTGC TTTATATTTAATTAT TERM 1690 1522921 - 1522878 - T 100 -12.8 -4.06055 | gap 1, opp_overlap 1522883, overlap 1522883 ATTTCTTAAATTAAA CAAAAGGTAATG-CGAAGTTT TAT ATACTTCGGCATTACCTTTTA TCTGCACCAAACCCA TERM 1691 1522916 - 1522883 - T 100 -10.5 -5.04868 | gap 1, opp_overlap 1522883, overlap 1522878 TTAAATTAAACAAAA GGTAATG-CGAAGTTT TAT ATACTTCGGCATTACC TTTTATCTGCACCAA TERM 1692 1522883 - 1522916 + T 95 -10.5 -4.52589 | gap 1, opp_overlap 1522883 1522878 TTAAATTAAACAAAA GGTAATG-CGAAGTTT TAT ATACTTCGGCATTACC TTTTATCTGCACCAA Cthe_1256 1525205 - 1522938 - | glycoside hydrolase family protein TERM 1693 1523131 - 1523120 - G 73 -7.2 -4.10657 | overlap 1523110 GTACAGGCCCTAAAA CGGC CGCA GCCG AAGAATCGGACATTA TERM 1694 1524092 - 1524102 + g 76 -2.4 -5.47431 | overlap 1524090 CAAGGTTTACTTTGT CGCC TCC GGCC TTTTTTATCTCTTCA Cthe_1257 1528424 - 1525272 - | carbohydrate-binding, CenC-like protein Cthe_1258 1529323 - 1528544 - | copper amine oxidase-like protein TERM 1695 1529324 - 1529295 - G 72 -8.9 -3.37142 | overlap 1529293 CAAAATACCACAAGA TATGAAAAAAACA CTCT TATTTTTTTCATA ATCACCCTCCTCCAC Cthe_1259 1530271 - 1529729 - | CDP-alcohol phosphatidyltransferase TERM 1696 1530308 - 1530293 - R 76 -3.4 -5.44721 | ACCACCTTAAAAAAA TTATAA CAAT TTATAA AACAGCCTTATTTAA Cthe_1260 1530719 - 1530303 - | 4-hydroxybenzoyl-CoA thioesterase TERM 1697 1530672 - 1530633 - G 72 -8.8 -3.53012 | gap 1, opp_overlap 1530629 CCTTGCCGCCTCAAA CCAGATAGGA-TAGTTC GAATGAT GAACTATTCCCATCCGG TCTGTTTCAGCATAT TERM 1698 1530808 - 1530792 - R 71 -2.3 -5.47914 | AAAAATTATAAAAAA TAATTGC GTA ACAACTA AAGCAAATCAAATTG Cthe_1261 1531815 - 1530841 - | 6-phosphofructokinase TERM 1699 1531541 - 1531554 + g 85 -6.7 -5.12617 | overlap 1531552 ATACCAAATACTTTT GCCAT GGAC ATGGC TTTTTTAAGTCCTTC TERM 1700 1531871 - 1531845 - R 77 -8.1 -3.84648 | overlap 1531840 CTTAATAGTATTAAA CCCGTGTTT TAAGAGGCT AAACACGGG ATAATAAAAAAAACT Cthe_1262 1532098 - 1531901 - | hypothetical protein Cthe_1263 1532353 - 1532120 - | transcription attenuation protein MtrB dnaE 1535966 - 1532421 - | DNA polymerase III DnaE TERM 1701 1535769 - 1535780 + g 75 -5.8 -4.74539 | AGTATATATTTCACA CCCA AGTA TGGG TTTTATTCCATTATT TERM 1702 1536046 - 1536021 - R 77 -4.1 -5.34555 | overlap 1536014 1536023 GTATATTATAAAAAA TATTTTCATGA ATAT TCATGAAAACT TACGGCATTCAAATC TERM 1703 1536044 - 1536023 - R 88 -8.9 -4.30057 | overlap 1536014 1536021 ATATTATAAAAAATA TTTTCATGA ATAT TCATGAAAA CTTACGGCATTCAAA TERM 1704 1536255 - 1536208 - R 89 -8.7 -4.69559 | gap 1, opp_overlap 1536209 1536211, overlap 1536211 AAATCTCAAAACAAA TAATGTGCATGCAGCACCTT TAACAACGG AAGGTGACGCATGCACA-TA TTTTTCATGCCAAAA TERM 1705 1536209 - 1536255 + r 89 -8.8 -4.72272 | opp_overlap 1536208 1536211, overlap 1536211 AATCTCAAAACAAAT AATGTGCATGCAGCACCTTT AACAACG GAAGGTGACGCATGCACATA TTTTTCATGCCAAAA TERM 1706 1536253 - 1536211 - R 100 -12.9 -4.43397 | opp_overlap 1536209 1536211, overlap 1536208 TCTCAAAACAAATAA TGTGCATGCAGCACCTT TAACAACGG AAGGTGACGCATGCACA TATTTTTCATGCCAA TERM 1707 1536211 - 1536253 + r 100 -11.4 -3.98256 | opp_overlap 1536211 1536208, overlap 1536209 TCTCAAAACAAATAA TGTGCATGCAGCACCTTT AACAACG GAAGGTGACGCATGCACA TATTTTTCATGCCAA Cthe_1265 1538026 - 1536290 - | alpha-phosphoglucomutase TERM 1708 1537348 - 1537383 + g 70 -3.4 -5.00138 | gap 1 TTTTGAAAGTTTTGC CTATTTCTGCA-GCC AGTTCAG GGTTTGCAGAAAGAG TTTTTAATTTCGATA Cthe_1266 1540602 - 1538134 - | methyl-accepting chemotaxis sensory transducer TERM 1709 1539026 - 1539061 + g 80 -6.3 -4.7416 | gap 1 TGCGATGATTCAACG GCTATATTGGAAGCAT TTTTT ATGCTTCCTATG-AGC TTTTTCAAGTTTTCC TERM 1710 1539522 - 1539539 + g 74 -4.1 -5.16237 | overlap 1539524 TATAGTTGTCCCTTT CCCTCAA GTCT TTGAGCG TTTTTTCATCAAGTT TERM 1711 1540405 - 1540424 + g 70 -2.8 -5.00884 | overlap 1540408 TATTTTTATTTTATT TACTCTGG ACAG CCGGATTA TTTTTTCAAACCGGT TERM 1712 1540608 - 1540621 + r 71 -2.3 -5.40072 | CAAAACTCATAGTTT CCCAC CTCT GTGCG TTTTTTTGGACGCGC Cthe_1267 1541617 - 1540967 - | two component LuxR family transcriptional regulator Cthe_1268 1542788 - 1541610 - | histidine kinase TERM 1713 1541940 - 1541926 - G 73 -8.6 -3.66666 | opp_overlap 1541925 CGGAAAACGGTCAAA GAAACC ACA GGTTTC AATTGCTCACATGTA TERM 1714 1543936 - 1543915 - g 85 -3.7 -5.60993 | GCCCCTATAAAAAAA TGACCTTTG CAAG CAAATGCCA GCACCTGATTTACTG Cthe_1269 1543014 - 1544297 + | hypothetical protein Cthe_1270 1544378 - 1545601 + | proteinase inhibitor I4, serpin TERM 1715 1545649 - 1545680 + F 85 -6.7 -5.10163 | opp_overlap 1545652, overlap 1545652 AAAAACACATCAATG AAAGGGGTATATG GCTTTG CATATATCCCTTG TTTTATTTTCAACTT TERM 1716 1545652 - 1545677 + F 85 -8.4 -4.6313 | opp_overlap 1545652, overlap 1545649 AACACATCAATGAAA GGGGTATATG GCTTTG CATATATCCC TTGTTTTATTTTCAA TERM 1717 1546131 - 1546147 + G 72 -10.1 -2.64877 | ATTCCAGGTGGGCTT CGGTGTC CTG GGCACCG TCAATTGTCTATCGC Cthe_1271 1545824 - 1547863 + | carbohydrate-binding family 6 protein TERM 1718 1547910 - 1547955 + F 100 -13.7 -4.05561 | gap 1, opp_overlap 1547907 1547910, overlap 1547910 1547914 ATATTTTTTAAACGA TGCATTTTATACTCGGGCAT AAAAACC ATGCCCGGGTATAAAAT-CA ATTTTTTATTTATTA TERM 1719 1547910 - 1547956 + F 100 -10.4 -5.80003 | opp_overlap 1547907 1547910, overlap 1547910 1547914 ATATTTTTTAAACGA TGCATTTTATACTCGGGCAT AAAAACC ATGCCCGGGTATAAAATCAA TTTTTTATTTATTAC TERM 1720 1547955 - 1547910 - f 100 -12.9 -2.91322 | gap 1, opp_overlap 1547910 1547910 1547914, overlap 1547907 ATATTTTTTAAACGA TGCATTTTATACTCGGGCATAA AAA CCATGCCCGGGTATAAAAT-CA ATTTTTTATTTATTA TERM 1721 1547914 - 1547952 + F 100 -15.6 -3.01848 | opp_overlap 1547910 1547907, overlap 1547910 1547910 TTTTTAAACGATGCA TTTTATACTCGGGCAT AAAAACC ATGCCCGGGTATAAAA TCAATTTTTTATTTA Cthe_1272 1547995 - 1548732 + | putative RNA polymerase sigma factor SigI Cthe_1273 1548830 - 1550275 + | alpha-L-arabinofuranosidase B TERM 1722 1550332 - 1550347 + F 82 -7.6 -4.59773 | opp_overlap 1550331 1550334 GATTGGATTAAAAGT CAGGTA ATTG TACCTG TTTTTGGCACTGCAA Cthe_1274 1550424 - 1551731 + | nucleoside recognition Cthe_1275 1552191 - 1551754 - | H+-ATPase subunit H TERM 1723 1552198 - 1552208 + r 79 -6.8 -4.62302 | CATTTCCATATTTAT CCCT CCC AGGG TTTTTGGCAATCTTA Cthe_1276 1552700 - 1552221 - | phosphopantetheine adenylyltransferase Cthe_1277 1553371 - 1552739 - | putative methyltransferase TERM 1724 1553184 - 1553164 - G 71 -6.9 -4.13728 | overlap 1553166 CATATATGTCCAAAA CATTTGTAC CCG GTACAAAAG CAGCCAAAATGTTGA TERM 1725 1553182 - 1553166 - G 70 -8.1 -3.66256 | overlap 1553164 TATATGTCCAAAACA TTTGTAC CCG GTACAAA AGCAGCCAAAATGTT TERM 1726 1553229 - 1553245 + g 77 -6.5 -4.58303 | ACCTTGTCCGATGTA GGCCTTG TGG CAAGCCC TTTTATCGTCTTTAG Cthe_1278 1555470 - 1553386 - | ATP-dependent DNA helicase RecG TERM 1727 1553496 - 1553511 + g 95 -6 -5.66989 | TTTTTAAAATTTCCT GCGCCG CTTC CTGCGC TTTTTTTAATATTTC Cthe_1279 1555688 - 1555876 + | 50S ribosomal protein L28P TERM 1728 1555956 - 1555921 - T 100 -10.6 -4.81752 | opp_overlap 1555921 AAAAACAGCGAAAAA GTGTACCACATGCTTC TTAG AAAGAATGTGATACAC TTTTTTATTTTTTCT TERM 1729 1555921 - 1555956 + T 100 -7.7 -6.07374 | opp_overlap 1555921 AAAAACAGCGAAAAA GTGTACCACATGCTT CTTAGA AAGAATGTGATACAC TTTTTTATTTTTTCT Cthe_1280 1556407 - 1556141 - | hypothetical protein Cthe_1281 1556535 - 1557230 + | hypothetical protein Cthe_1282 1558941 - 1557289 - | diguanylate cyclase with GAF sensor TERM 1730 1557560 - 1557576 + g 76 -4.3 -5.15634 | opp_overlap 1557560 TACCTTGCAATTATA TCTCCGC TTC GCAGGGA TTTTTTCATAAGATG Cthe_1283 1559653 - 1559012 - | DNA-(apurinic or apyrimidinic site) lyase / endonuclease III TERM 1731 1559740 - 1559771 + r 71 -8.2 -3.26471 | gap 1, opp_overlap 1559747, overlap 1559747 CTGTATCACGCTATA G-AAAAAAGTCCAGT AAA ACCGGACTTTTTTGC TTAATATAGAAATAA TERM 1732 1559747 - 1559763 + r 84 -6.5 -5.31059 | opp_overlap 1559747, overlap 1559740 ACGCTATAGAAAAAA GTCCAGT AAA ACCGGAC TTTTTTGCTTAATAT TERM 1733 1559763 - 1559747 - R 100 -8.7 -5.37043 | opp_overlap 1559747 1559740 ACGCTATAGAAAAAA GTCCAGT AAA ACCGGAC TTTTTTGCTTAATAT Cthe_1284 1561260 - 1559794 - | glycogen/starch synthases, ADP-glucose type Cthe_1285 1562798 - 1561401 - | metal dependent phosphohydrolase TERM 1734 1562470 - 1562486 + g 77 -9.5 -3.53387 | TAATACCATTCACAT CTGGTAA TTC TTACCAG TTCATTATATGTATG TERM 1735 1562967 - 1562944 - R 91 -7.4 -5.20154 | opp_overlap 1562946, overlap 1562947 ACATAAGGTAAAAAA TAAGCGGCTT TTAC AAGCCGCCTC TGATATGCAACGCTT TERM 1736 1562964 - 1562947 - R 100 -11.3 -4.67173 | opp_overlap 1562946, overlap 1562944 TAAGGTAAAAAATAA GCGGCTT TTAC AAGCCGC CTCTGATATGCAACG Cthe_1286 1564511 - 1562982 - | peptidase S1 and S6, chymotrypsin/Hap TERM 1737 1563966 - 1563980 + g 75 -2.8 -5.32882 | AGAAGAATCGGCGTT GTTCTC AAT GACAAC TTTTTTATAATAATC TERM 1738 1564158 - 1564170 + g 70 -3.4 -4.97888 | overlap 1564160 AACAAGTATCATCTG CAGT AAAAC ACTG TTTTTACGTTTTTTT Cthe_1287 1566147 - 1564633 - | periplasmic sensor signal transduction histidine kinase TERM 1739 1564758 - 1564770 + g 86 -4.7 -5.39681 | CTATGGCAAGTCCAA GGCCG GCA CCGCC TTTTTCTTTGCTTCT TERM 1740 1564869 - 1564879 + g 79 -5.4 -4.91712 | opp_overlap 1564869, overlap 1564863 TATCCTCAACACAAA CAAG TAC CTTG TTTTTGTAACTTGAG Cthe_1288 1566833 - 1566147 - | two component transcriptional regulator Cthe_1289 1567093 - 1566899 - | hypothetical protein Cthe_1290 1567387 - 1567728 + | hypothetical protein Cthe_1291 1568644 - 1567778 - | amidohydrolase 2 TERM 1741 1567969 - 1567985 + g 84 -8 -4.70921 | CGGGTATGCTGTCAT CAAGCC AGCTG GGCTTG TTTGTTTCTCTTATC TERM 1742 1568229 - 1568217 - G 71 -6.3 -4.16681 | AATACTATCGGAAAA GCAAT GTC ATTGC AAAATTCATATAAAC TERM 1743 1568464 - 1568486 + g 86 -7.8 -4.94672 | GAGCAAAATTGGCCA TGACGGTATA ATC TATACCCTCA TTTTTCATGTTGTTT TERM 1744 1569038 - 1569010 - g 79 -6.6 -4.62069 | gap 1, opp_overlap 1569010, overlap 1569011 1569013 TGGGTATGGTAAAAA CCATCCCGGACGG TATT CCG-CCGGGAAGT GATGCTGCAAACCTT TERM 1745 1569037 - 1569011 - g 77 -10.1 -3.3692 | gap 1, opp_overlap 1569010, overlap 1569010 1569013 GGGTATGGTAAAAAC CATCCCGGACGG TATT CCG-CCGGGAAG TGATGCTGCAAACCT TERM 1746 1569035 - 1569013 - g 82 -11.3 -3.25166 | gap 1, opp_overlap 1569010, overlap 1569011 1569010 GTATGGTAAAAACCA TCCCGGACGG TATT CCG-CCGGGA AGTGATGCTGCAAAC TERM 1747 1569421 - 1569401 - g 70 -8.3 -3.42231 | overlap 1569404 AAAGAAAATCACCAA TTATCTCCC TTC GGGAGAAAA CACTGAAATATTGCT TERM 1748 1569418 - 1569404 - g 73 -10 -2.84344 | overlap 1569401 GAAAATCACCAATTA TCTCCC TTC GGGAGA AAACACTGAAATATT TERM 1749 1569999 - 1569983 - g 80 -6.5 -4.7339 | overlap 1569975 1569984 AACAAATCCGAAAAA GTCCGGT GTA ACCGGAT ATGACGAATTGCAAG TERM 1750 1569998 - 1569984 - g 77 -10 -3.42407 | overlap 1569975 1569983 ACAAATCCGAAAAAG TCCGGT GTA ACCGGA TATGACGAATTGCAA Cthe_1292 1568871 - 1570079 + | phosphoglycerate mutase TERM 1751 1570112 - 1570138 + T 100 -10.1 -5.03994 | overlap 1570113 CTATGGTTTCCCCAA TCGCCCGCAAG GTAAA CTTTCGGGCGG TTTTTCTATGTCAGA TERM 1752 1570113 - 1570137 + T 93 -11.4 -3.61674 | overlap 1570112 TATGGTTTCCCCAAT CGCCCGCAAG GTAAA CTTTCGGGCG GTTTTTCTATGTCAG Cthe_1293 1571151 - 1570144 - | metal dependent phosphohydrolase Cthe_1294 1572785 - 1571358 - | recombinase TERM 1753 1573135 - 1573108 - R 100 -15.8 -5.35365 | AAAATATAATAAAAA TTGTCCGGATTA TTTT TAATCCGGACAA TCAAAAATAGATTTC Cthe_1295 1573711 - 1573136 - | 5-formyltetrahydrofolate cyclo-ligase Cthe_1296 1574488 - 1573802 - | hypothetical protein TERM 1754 1574384 - 1574364 - G 83 -9.1 -3.99986 | overlap 1574367 TCAACAAAATCCAAA GAACTATCC GTC GAATAGTTC CCATCCAAGTCAAGA cobT 1575659 - 1574604 - | nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase TERM 1755 1575355 - 1575369 + g 73 -7.2 -3.98842 | ATATCGGAACCTGTA TGCTTT GCA AAAGCA TTTATGGCTGTTATA TERM 1756 1575807 - 1575785 - R 100 -7 -5.8901 | opp_overlap 1575785 ATATAAAACAAAAAA CACCTTGGAA TTT CTTCAAGGTG TTTTTTGTTTTTCGC TERM 1757 1575785 - 1575807 + r 100 -8.5 -5.93252 | opp_overlap 1575785 ATATAAAACAAAAAA CACCTTGGA ATTTC TTCAAGGTG TTTTTTGTTTTTCGC Cthe_1298 1576165 - 1575848 - | 50S ribosomal protein L25P Cthe_1299 1576584 - 1576270 - | hypothetical protein TERM 1758 1576894 - 1576874 - H 74 -6.9 -4.32651 | opp_overlap 1576874 AAGAATGGAGGAAAA GCGTTAAAC TGC GTTTAATGC TTGATGCCTATGAAA TERM 1759 1576874 - 1576894 + H 77 -9.1 -3.20382 | opp_overlap 1576874 AAGAATGGAGGAAAA GCGTTAAAC TGC GTTTAATGC TTGATGCCTATGAAA TERM 1760 1577038 - 1577027 - g 70 -5.8 -4.41895 | AATCCGCAAGCAAAA CAGC AGCA GCTG GGTTCCCAAACCCAG Cthe_1300 1576898 - 1577902 + | hypothetical protein TERM 1761 1577963 - 1577906 - f 77 -9.1 -3.26844 | opp_overlap 1577906, overlap 1577905 TCGATGAAGTAAAAT CGGGCCAAGCTTTGCAAAATGACATCT TATT AAAAGGCGGTTTGTAAAGCCCGGCCCG TCTTTTTTTGTCCAA TERM 1762 1577906 - 1577963 + F 78 -6.9 -4.45201 | opp_overlap 1577905 1577906 TCGATGAAGTAAAAT CGGGCCAAGCTTTGCAAAATGACATCT TATT AAAAGGCGGTTTGTAAAGCCCGGCCCG TCTTTTTTTGTCCAA Cthe_1301 1578033 - 1579280 + | hypothetical protein TERM 1763 1579425 - 1579392 - T 95 -10.4 -4.28018 | gap 1, opp_overlap 1579392 AATATTTTAGCAAAA GAGCCCGGC-GTA TTTTCTTCT TACTGCCGGGCTC TTTTTAAAACGCTAT TERM 1764 1579392 - 1579425 + T 95 -10.4 -4.57837 | gap 1, opp_overlap 1579392 AATATTTTAGCAAAA GAGCCCGGC-GTA TTTTCTTCT TACTGCCGGGCTC TTTTTAAAACGCTAT Cthe_1302 1581125 - 1579458 - | hypothetical protein TERM 1765 1579814 - 1579830 + g 71 -6.5 -4.1891 | CAACCAGCACTCTTC CGGCATT CAC ACTGCCG TTTATCTTCGCAGAG TERM 1766 1580098 - 1580108 + g 79 -5.4 -4.98531 | AGGTCATTTACCACT CTTG AAA CAAG TTTTTCATTTCCGGG TERM 1767 1580673 - 1580654 - G 74 -5 -4.72272 | CTCCGGTATGAAAAA TTGTACCC ACAG GGGTAAAA ATAGCCAAAGCCGTT TERM 1768 1581268 - 1581229 - R 71 -2.9 -5.18355 | gap 1 TTCAAAAATCAAAAA GCTTTACGGTGCGATAAA AATTG TTTCCCGCTCCA-AAAGC CAATTGACAGAAAAT TERM 1769 1581425 - 1581403 - R 79 -7.1 -4.54026 | opp_overlap 1581403 CGTCAAACAAAATAA TTCAAGAAG AAAAA CTCCTTGAA ACTTTTGCTTGTCCA Cthe_1303 1582950 - 1581724 - | glycosyl transferase, group 1 Cthe_1304 1584508 - 1583135 - | PhoH-like protein Cthe_1305 1585283 - 1584936 - | cupin 2, barrel TERM 1770 1585222 - 1585211 - G 70 -5.8 -4.35581 | opp_overlap 1585210 1585211, overlap 1585205 TGAAAATATGCAAAA GCTC AACT GAGC CTTTTCCACCCCTCA Cthe_1306 1585509 - 1585910 + | hypothetical protein TERM 1771 1585945 - 1585958 + T 100 -8.1 -5.42198 | TTTTCATCAATTGCT GGGCT TTCG AGCCC TTTTATTTTTTAAAA TERM 1772 1586021 - 1585999 - T 100 -8.5 -5.53079 | opp_overlap 1585999 AAAACATACAAAAAA CGCCTATGT ATGAA ACATAGACG TTTTTTAATTTATTA TERM 1773 1585999 - 1586021 + T 88 -6.3 -5.46129 | opp_overlap 1585999 AAAACATACAAAAAA CGCCTATGT ATGAA ACATAGACG TTTTTTAATTTATTA Cthe_1307 1588198 - 1586303 - | cellulosome anchoring protein, cohesin region TERM 1774 1587388 - 1587398 + g 70 -5.4 -4.43037 | ATTTTTTCGCTTCAT CAAG AGC CTTG TTTAATTTTTCTTCA TERM 1775 1588778 - 1588751 - R 100 -8.5 -5.47821 | opp_overlap 1588751, overlap 1588738 ATGTATTTAAAAAAA CACCCTACCAC TTTTAC ATGATAGGGTG TTAATATATACCTTT Cthe_1308 1591480 - 1588829 - | pyruvate phosphate dikinase TERM 1776 1591699 - 1591716 + H 74 -5.7 -4.63486 | opp_overlap 1591699 TCAAGTTCAAAAAAA TTTTTCT TTTT AGAAAAA TTTTCTTGGACACAT TERM 1777 1591716 - 1591699 - H 86 -5.7 -5.47399 | opp_overlap 1591699 TCAAGTTCAAAAAAA TTTTTCT TTTT AGAAAAA TTTTCTTGGACACAT Cthe_1309 1591992 - 1593065 + | radical SAM family protein TERM 1778 1593535 - 1593519 - g 86 -2.3 -6.04324 | GTAAAAAACAAAAAA GAAAATT AAA AATTGTC GCTTACATGGTACTT Cthe_1310 1593092 - 1593691 + | accessory gene regulator B TERM 1779 1593922 - 1593957 + T 70 -4 -5.08824 | opp_overlap 1593928, overlap 1593928 CAGTCAATTAATTAC TACAGAGCTCGGGA TGTTTTAT TCCCGAGCTTTTCA TTTTTTCGCTGCAAA TERM 1780 1593951 - 1593928 - T 75 -9.6 -2.98282 | opp_overlap 1593928 1593922 ATTAATTACTACAGA GCTCGGGA TGTTTTAT TCCCGAGC TTTTCATTTTTTCGC TERM 1781 1593928 - 1593951 + T 100 -9.6 -4.86862 | opp_overlap 1593928, overlap 1593922 ATTAATTACTACAGA GCTCGGGA TGTTTTAT TCCCGAGC TTTTCATTTTTTCGC Cthe_1311 1595328 - 1593997 - | signal transduction histidine kinase regulating citrate/malate metabolism TERM 1782 1595471 - 1595443 - R 77 -4 -5.42131 | opp_overlap 1595443 TAATTATATAAAAAA GGATATTACC TACAATCCC AGTAATATCC CTTTTCTTTAGCAAT Cthe_1312 1596886 - 1595498 - | glycyl-tRNA synthetase TERM 1783 1596320 - 1596332 + g 80 -6.3 -4.66833 | TATCTTTTTTCTTGT TGTTC TCT GAACA TTTTTAAAGTTCACA Cthe_1313 1598224 - 1597028 - | phosphopantothenoylcysteine decarboxylase / phosphopantothenate-cysteine ligase TERM 1784 1597329 - 1597351 + g 100 -4.8 -6.23317 | opp_overlap 1597333 GGGTTCTTTACCAAT TCAAGGGTAA GTT TTTCCCCTGA TTTTTTTATTTTTCT TERM 1785 1597501 - 1597486 - G 89 -10.4 -4.14627 | opp_overlap 1597485, overlap 1597487 TGGTCACACAAACAA CCTCCG CCCC CGGAGG CGGAGCAATGTTTAC TERM 1786 1597506 - 1597487 - G 81 -11.4 -3.08294 | opp_overlap 1597485, overlap 1597486 GGTCACACAAACAAC CTCCGCCC CCGG AGGCGGAG CAATGTTTACAGGGC TERM 1787 1597723 - 1597739 + g 70 -7.9 -3.62096 | opp_overlap 1597715 CCACAATTCTCTCCG GAGACGG GAA CCGTCCC TTTCCGCTGGTACCG TERM 1788 1598334 - 1598290 - R 87 -5.2 -5.59564 | opp_overlap 1598293 1598295, overlap 1598293 AGAAACTTAAAAAAA TAAGATCAAGATTTCGATTT TGATT AAATCGCAATCTCAATCTCT TAAAAACCACCTTGC TERM 1789 1598331 - 1598293 - R 93 -9.1 -4.83715 | opp_overlap 1598293 1598295, overlap 1598290 AACTTAAAAAAATAA GATCAAGATTTCGATTT TGATT AAATCGCAATCTCAATC TCTTAAAAACCACCT Cthe_1314 1598659 - 1598423 - | DNA-directed RNA polymerase, omega subunit Cthe_1315 1599330 - 1598719 - | guanylate kinase TERM 1790 1598984 - 1598970 - G 76 -2.1 -5.45802 | GCGGCAAAATAAAAA CCGAA ACACA TTCAG GATAGGCTTTCATTA Cthe_1316 1599624 - 1599343 - | hypothetical protein Cthe_1317 1600527 - 1599643 - | hypothetical protein TERM 1791 1599911 - 1599894 - G 80 -6.3 -4.7254 | opp_overlap 1599906 ATCTGTCAGCAAAAA TGGCAAC TTCC ATTGCCA GGCGATTCTCATCTA TERM 1792 1600337 - 1600319 - G 71 -6.1 -4.2679 | GAATCTTCACTAAAA TCTTCAT AGTTA ATGAAGA CATCTACCTTCCCCC Cthe_1318 1601249 - 1600878 - | response regulator receiver protein Cthe_1319 1601989 - 1601246 - | hypothetical protein Cthe_1320 1602912 - 1601971 - | 50S ribosomal protein L11P methyltransferase Cthe_1321 1604090 - 1602930 - | chaperone protein DnaJ TERM 1793 1604006 - 1604018 + g 90 -3.4 -6.02919 | opp_overlap 1604006 GATACTGTTTAGCAA GCTT TCTGT AAGC TTTTTTTATTTCTGC TERM 1794 1604221 - 1604255 + r 74 -9.5 -2.51458 | gap 1, opp_overlap 1604221 1604224 1604226, overlap 1604219 1604225 AAAAGTGAAATTAAA TAAGAGCCAAAGCCAT ATTC ATGACTTTGGC-CTTA CATTCTTTTGTGATG TERM 1795 1604255 - 1604221 - R 100 -11.7 -4.13183 | gap 1, opp_overlap 1604221 1604219 1604225, overlap 1604224 1604226 AAAAGTGAAATTAAA TAAGAGCCAAAGCCAT ATTC ATGACTTTGGC-CTTA CATTCTTTTGTGATG TERM 1796 1604252 - 1604224 - R 88 -9 -4.15998 | gap 1, opp_overlap 1604221 1604219 1604225, overlap 1604221 1604226 AGTGAAATTAAATAA GAGCCAAAGCCAT ATTC ATGACTTTGGC-C TTACATTCTTTTGTG TERM 1797 1604251 - 1604226 - R 100 -12.7 -3.66578 | opp_overlap 1604225 1604221 1604219, overlap 1604224 1604221 TGAAATTAAATAAGA GCCAAAGCCAT ATTC ATGACTTTGGC CTTACATTCTTTTGT Cthe_1322 1606125 - 1604299 - | molecular chaperone DnaK TERM 1798 1605815 - 1605825 + g 76 -2.4 -5.42198 | TCACCTAAATATGCC TCGG CAT CCGC TTTTATTTTTTGAAG Cthe_1323 1606902 - 1606222 - | GrpE protein TERM 1799 1606793 - 1606809 + g 77 -7.9 -4.27512 | opp_overlap 1606794, overlap 1606791 1606794 TTTGCGGCTTCATCA ACCGCCT CAC AGGCGGC TTCTTTGTTATCCGC TERM 1800 1606794 - 1606808 + g 82 -11.4 -3.15784 | opp_overlap 1606794, overlap 1606793 1606791 TTGCGGCTTCATCAA CCGCCT CAC AGGCGG CTTCTTTGTTATCCG TERM 1801 1606808 - 1606794 - G 82 -11.4 -3.14132 | opp_overlap 1606794 1606793 1606791 TTGCGGCTTCATCAA CCGCCT CAC AGGCGG CTTCTTTGTTATCCG Cthe_1324 1608068 - 1607013 - | heat-inducible transcription repressor HrcA TERM 1802 1608085 - 1608111 + r 90 -12.4 -3.02233 | overlap 1608082 CTTCTCACCTCTTTG TTAGCACTCTAC GTC GTTGAGTGCTAA TGCTATTTTTAAAAT Cthe_1325 1609353 - 1608211 - | coproporphyrinogen III oxidase, anaerobic TERM 1803 1608459 - 1608473 + g 72 -10 -2.62636 | overlap 1608453 1608458 1608457 CAATCTTATTTTCCA CCGGAA GTC TTCCGG AATTTATTATTTTCA TERM 1804 1609266 - 1609243 - G 79 -9.6 -3.77413 | overlap 1609232 1609241 AAGAGCATTAAAATA TGCAGGGACA AAAT CATCCCTGCA GGCAAAGGAATTAAA TERM 1805 1609313 - 1609295 - G 82 -6 -4.85177 | overlap 1609298 AAATCACAGTAAAAA CACTTTGC TTT GCAAAACG GTACATGAATATACA Cthe_1326 1611229 - 1609418 - | GTP-binding protein LepA Cthe_1327 1611686 - 1611405 - | hypothetical protein Cthe_1328 1613081 - 1611804 - | stage II sporulation P TERM 1806 1613801 - 1613824 + r 100 -10.4 -4.77775 | opp_overlap 1613801 CTTTACATAAAAAAA CTACTTTGGG TATA TCCAAAGTAG TTTCTTTTATACAAT TERM 1807 1613824 - 1613801 - R 100 -9.7 -5.71712 | opp_overlap 1613801 CTTTACATAAAAAAA CTACTTTGG GTATAT CCAAAGTAG TTTCTTTTATACAAT Cthe_1329 1618175 - 1613874 - | putative CoA-substrate-specific enzyme activase TERM 1808 1616239 - 1616251 + g 91 -7.7 -5.28942 | TAGTCGAAAAGGTTG GGGAT ATC ATCCC TTTTTATTTCAAGTC Cthe_1330 1619015 - 1618491 - | thylakoidal processing peptidase TERM 1809 1619257 - 1619227 - R 72 -3.3 -5.25803 | opp_overlap 1619216, overlap 1619216 AATCGGTATAAAAAA GCACGGGTACA GGACATTTT TACACCCATGC TTTTTAGTTCCTTTG aspS 1621114 - 1619327 - | aspartyl-tRNA synthetase Cthe_1332 1622418 - 1621165 - | histidyl-tRNA synthetase TERM 1810 1622516 - 1622483 - R 81 -8.9 -3.85704 | opp_overlap 1622483 1622481 CTACTAATTACTAAA GCCTCCCGTCC GACAAATGCCAG GGACGAGAGGC TGTTTTCCCGCGGTG Cthe_1333 1624016 - 1622886 - | hypothetical protein TERM 1811 1625994 - 1625975 - g 79 -5.8 -4.88687 | opp_overlap 1625983, overlap 1625983 TGAAATAAAAAACAA TGACAAAA TCAC TTTTGCCA ACAGTGAATATGTTT Cthe_1334 1624461 - 1626023 + | FHA domain-containing protein Cthe_1335 1626689 - 1626060 - | peptidase A24A, prepilin type IV TERM 1812 1626585 - 1626545 - G 80 -11.4 -2.75992 | gap 1, overlap 1626542 GGGGAGTTAACACCA TTACGACTATGTACTGTGG CTTT CCACA-TACATAGCCGAAA AACCACTTCAGTCTG Cthe_1336 1627442 - 1626741 - | hypothetical protein TERM 1813 1627332 - 1627311 - G 74 -5.1 -4.82901 | overlap 1627293 1627313 TTTTTGGTACAAAAA CTCACTGAC CAAA ATCAGTGCG AACATGGTAAGAATT TERM 1814 1627464 - 1627514 + r 100 -12.4 -3.91032 | opp_overlap 1627467 1627482, overlap 1627467 1627468 1627470 1627479 1627482 TGCCCTCTTGTCGAA TAATTATTTGTCGAATAATTATTT GTC GAATAATTATTTGTCGAATAATTA TTTGTCGAATAATTA TERM 1815 1627467 - 1627511 + r 86 -9.7 -4.07877 | opp_overlap 1627467 1627482, overlap 1627464 1627468 1627470 1627479 1627482 CCTCTTGTCGAATAA TTATTTGTCGAATAATTATTT GTC GAATAATTATTTGTCGAATAA TTATTTGTCGAATAA TERM 1816 1627468 - 1627525 + r 80 -10.3 -2.67747 | opp_overlap 1627467 1627482, overlap 1627467 1627464 1627470 1627479 1627482 CTCTTGTCGAATAAT TATTTGTCGAATAATTATTTGTCGAAT AATT ATTTGTCGAATAATTATTTGTCGAATA ATTATAATGTAAAAA TERM 1817 1627470 - 1627523 + r 71 -8.5 -2.88069 | opp_overlap 1627467 1627482, overlap 1627467 1627464 1627468 1627479 1627482 CTTGTCGAATAATTA TTTGTCGAATAATTATTTGTCGAAT AATT ATTTGTCGAATAATTATTTGTCGAA TAATTATAATGTAAA TERM 1818 1627479 - 1627529 + r 89 -12.4 -2.63102 | opp_overlap 1627467 1627482, overlap 1627467 1627464 1627470 1627468 1627482 TAATTATTTGTCGAA TAATTATTTGTCGAATAATTATTT GTC GAATAATTATTTGTCGAATAATTA TAATGTAAAAATAAT TERM 1819 1627482 - 1627526 + r 80 -9.7 -3.4678 | opp_overlap 1627467 1627482, overlap 1627467 1627464 1627470 1627468 1627479 TTATTTGTCGAATAA TTATTTGTCGAATAATTATTT GTC GAATAATTATTTGTCGAATAA TTATAATGTAAAAAT TERM 1820 1627632 - 1627595 - R 100 -10.7 -5.8901 | opp_overlap 1627605 AGATAAAAGAAAAAA GGATCTATTAGGGCATA AGCT CATGCCCTAATATAACC AAGCCCTAAGATAAC TERM 1821 1627845 - 1627855 + r 74 -4 -5.27923 | CCAAACCATCTTCTT CTTT AAT AAAG TTTTTTATCAGCTTC Cthe_1337 1628831 - 1627962 - | type II secretion system protein TERM 1822 1628478 - 1628455 - G 80 -8.2 -4.36914 | gap 1, overlap 1628457 TCCCTGTCCATAAAA TACGG-AACGG CCG CCGTTACCGCA ATTCCAAACACCAAG TERM 1823 1628476 - 1628457 - G 77 -8.6 -3.79419 | gap 1, overlap 1628455 CCTGTCCATAAAATA CGG-AACGG CCG CCGTTACCG CAATTCCAAACACCA TERM 1824 1628700 - 1628690 - G 75 -8.2 -4.1347 | TGTCAAGGATACAAA GCCC TAC GGGC AGCAATCTCTTCAAC Cthe_1338 1629649 - 1628843 - | Flp pilus assembly protein TadB-like protein Cthe_1339 1630913 - 1629675 - | type II secretion system protein E Cthe_1340 1632040 - 1630913 - | hypothetical protein TERM 1825 1632429 - 1632441 + r 77 -7.7 -4.08974 | CCAAATCCCAGTTTT TCCGA ACT TCGGA TTTCTGTAATAAAGT Cthe_1341 1634129 - 1632612 - | coproporphyrinogen III oxidase TERM 1826 1633666 - 1633646 - G 74 -6.2 -4.386 | opp_overlap 1633655 CAACGTTGTATAAAA TCTCTGAC TTTTT ATCAGAGA CAAAATAATATTCTT Cthe_1342 1634731 - 1634126 - | beta-lactamase-like protein TERM 1827 1634200 - 1634216 + g 93 -9.5 -4.7373 | CCACAACATTGTCGT CAAGCTT CAT AAGCTTG TTTTTAATGGAATCC Cthe_1343 1635194 - 1634745 - | D-tyrosyl-tRNA deacylase Cthe_1344 1637485 - 1635311 - | (p)ppGpp synthetase I, SpoT/RelA TERM 1828 1636063 - 1636077 + g 86 -7.2 -5.011 | CTCTTTTTTCTTTCT TAAACC ACT GGTTTA TTTTATTCTTTGCCT Cthe_1345 1638091 - 1637576 - | adenine phosphoribosyltransferase TERM 1829 1637926 - 1637906 - G 72 -8.3 -3.53224 | overlap 1637908 CAGCGGTGCCCCAAA GATGAATCC TCT GGATTCAGC TCCAACAATAATGTC TERM 1830 1637924 - 1637908 - G 75 -9.5 -3.34398 | overlap 1637906 GCGGTGCCCCAAAGA TGAATCC TCT GGATTCA GCTCCAACAATAATG Cthe_1346 1640641 - 1638158 - | single-stranded-DNA-specific exonuclease RecJ TERM 1831 1639126 - 1639144 + g 77 -9.6 -3.46936 | overlap 1639123 1639127 TCTTTGCATGCCTGC TGTCCTGT CCC ACAGGACG TATTTCATGGACTTT TERM 1832 1639127 - 1639143 + g 76 -10.9 -2.67439 | overlap 1639126 1639123 CTTTGCATGCCTGCT GTCCTGT CCC ACAGGAC GTATTTCATGGACTT TERM 1833 1640491 - 1640503 + g 71 -4.9 -4.57353 | overlap 1640486 GTTTGTCGAGTGAAG GATTT AAA AAATC TTTTATATAATCCGG TERM 1834 1640779 - 1640797 + r 89 -8.9 -4.46073 | opp_overlap 1640779 ACTGATATAAAAAAA GCTCGAT CTTTT ATCGAGC TTTCTTGTCTTAGCC TERM 1835 1640797 - 1640779 - R 100 -8.9 -5.72616 | opp_overlap 1640779 ACTGATATAAAAAAA GCTCGAT CTTTT ATCGAGC TTTCTTGTCTTAGCC Cthe_1347 1641250 - 1640807 - | GatB/YqeY TERM 1836 1641121 - 1641137 + g 73 -7.3 -4.11216 | opp_overlap 1641106 1641121, overlap 1641118 TACCATCGTCATCAA GGGTAAC CTT GTTATCC TTTTCAACCTGAAGC Cthe_1348 1641443 - 1641267 - | SSU ribosomal protein S21P TERM 1837 1641726 - 1641713 - H 71 -8.1 -3.22774 | TATATGGATCATTAA TCGGC TCGG GCCGA TGGAAAAACATTGCA TERM 1838 1642101 - 1642125 + G 71 -5 -4.61231 | GTTGCTTTTATATAT TCCCATGTGG CTTTC TTGCATGGGA TTTTTGGGCATGTAC Cthe_1349 1641943 - 1643346 + | undecaprenyl-phosphate galactose phosphotransferase TERM 1839 1643354 - 1643335 - T 100 -8.6 -5.60993 | opp_overlap 1643335 GTTTTGAGAAAAAAA GATGCCTA CTAA CAGGCATC TTTTTTAAAATGGAA TERM 1840 1643335 - 1643354 + T 89 -7.9 -5.0538 | opp_overlap 1643335 GTTTTGAGAAAAAAA GATGCCT ACTAAC AGGCATC TTTTTTAAAATGGAA Cthe_1350 1643763 - 1643359 - | single-strand binding protein Cthe_1351 1644281 - 1643802 - | acetobutylicum phosphotransbutyrylase TERM 1841 1643875 - 1643858 - G 73 -6.9 -4.21827 | GCAAACATGTCAAAA CGGCTGC AAGC GCACCCG CAGTATCTATAAAAA Cthe_1352 1645657 - 1644326 - | UDP-glucose 6-dehydrogenase TERM 1842 1645013 - 1645001 - G 71 -6.3 -4.15044 | opp_overlap 1644992 1645001 CTTGGTTGCAAGAAA TGCAT TGG ATGCA TACTTAATCATTTCC TERM 1843 1645067 - 1645088 + g 79 -5.9 -4.9755 | overlap 1645069 AAAGGGTGTTTCATT GATATACAG AGGC CTGTATACC TTTTTCATTATCTCT TERM 1844 1645267 - 1645284 + g 73 -9.9 -3.18044 | opp_overlap 1645262 1645261, overlap 1645266 1645264 TCTTAACAACCTGAC CTGTACC AACA GGTACAG TGCTTTTATCAACTA Cthe_1353 1647393 - 1645933 - | polysaccharide biosynthesis protein TERM 1845 1646225 - 1646214 - G 100 -4.4 -5.94713 | ACTGGACAAAAAAAA CAGA AAAC TCTG CAAAAATGGTTCCAA TERM 1846 1647093 - 1647079 - G 72 -4.4 -4.72272 | opp_overlap 1647079 1647079 TGGTTTTATTAAAAA TATATA CAA TATATA TGCTATTGAAAGTAC TERM 1847 1647501 - 1647522 + r 71 -3.1 -5.26316 | TTTATTTTTTATTTT TTAGTCTTT CAGT AAAAACTAA TTTTTTATCCGATAA Cthe_1354 1648839 - 1647568 - | O-antigen polymerase TERM 1848 1648648 - 1648612 - G 74 -4.5 -4.96028 | overlap 1648614 TGTGAAAAAAAACAA CAGTGCAGAAACGATAA TAA TTATAAATCCTGCACTA TATACCTTTTGCGGA Cthe_1355 1649753 - 1648821 - | glycosyl transferase family protein Cthe_1356 1650676 - 1649771 - | glycosyltransferase Cthe_1357 1651757 - 1650663 - | glycosyl transferase, group 1 TERM 1849 1651660 - 1651670 + g 80 -2.4 -5.63374 | opp_overlap 1651618 TTGTCTAATTCATAT GCAG AGA CAGC TTTTTTTAATGTTAC Cthe_1358 1652695 - 1651805 - | glycosyltransferase Cthe_1359 1653199 - 1652705 - | glycosyltransferase 28-like protein Cthe_1360 1653687 - 1653196 - | polysaccharide biosynthesis protein CpsF Cthe_1361 1654925 - 1653882 - | NAD-dependent epimerase/dehydratase Cthe_1362 1655662 - 1655105 - | NusG antitermination factor Cthe_1363 1657321 - 1655927 - | lipopolysaccharide biosynthesis Cthe_1364 1658638 - 1657460 - | hypothetical protein TERM 1850 1658761 - 1658783 + r 89 -9.2 -4.52857 | opp_overlap 1658756 1658762, overlap 1658762 TCTCCAAAAATTTAA AGCATCTACA AAA TGTAGATGCC TTTTGTATAAAAACT TERM 1851 1658782 - 1658762 - R 100 -12.7 -3.99805 | opp_overlap 1658761 1658762, overlap 1658756 CTCCAAAAATTTAAA GCATCTACA AAA TGTAGATGC CTTTTGTATAAAAAC TERM 1852 1658762 - 1658782 + r 100 -12.7 -3.31232 | opp_overlap 1658762 1658756, overlap 1658761 CTCCAAAAATTTAAA GCATCTACA AAA TGTAGATGC CTTTTGTATAAAAAC Cthe_1365 1659372 - 1658806 - | hypothetical protein TERM 1853 1659198 - 1659209 + g 76 -4.4 -5.08824 | overlap 1659190 CAAAAGACATCCCCG GTGA TTTA TCAC TTTTTTGAGTCGACA Cthe_1366 1659956 - 1659405 - | dTDP-4-dehydrorhamnose 3,5-epimerase Cthe_1367 1660860 - 1660084 - | PHP-like protein TERM 1854 1660636 - 1660650 + g 78 -2.8 -5.48163 | TCCGGAATATATCTC CAACTT GAT ATGTTG TTTTTTCATTTCTTT TERM 1855 1660974 - 1660995 + r 100 -10.1 -4.88222 | opp_overlap 1660974 TATTATATTAAAAAA GGCAGAGCA TACA TGCTCCGCC TTTTTAACTTTTAAT TERM 1856 1660995 - 1660974 - R 100 -12.3 -5.23316 | opp_overlap 1660974 TATTATATTAAAAAA GGCAGAGCA TACA TGCTCCGCC TTTTTAACTTTTAAT Cthe_1368 1663167 - 1661035 - | S-layer-like domain-containing protein TERM 1857 1661937 - 1661949 + g 75 -7.7 -4.00526 | TCAGTTTTATCAATC CGTCA AGA TGACG TTTCATTGTCGCATT Cthe_1369 1663701 - 1663357 - | histidine triad (HIT) protein Cthe_1370 1664413 - 1663952 - | hypothetical protein Cthe_1371 1670330 - 1664451 - | YD repeat-containing protein TERM 1858 1665048 - 1665030 - G 77 -10.3 -3.33815 | opp_overlap 1665029 ACCCGCTCCAATCAA TGCACCG GTCAG CGGTGCA CTTGCTCCACAGGTT TERM 1859 1665763 - 1665774 + g 70 -5.8 -4.41548 | TCAAATATGAATCTT CGGT ATTC ACCG TTTTCTACCGTCTGC TERM 1860 1669659 - 1669676 + g 74 -4.9 -4.72986 | opp_overlap 1669649, overlap 1669649 AAAAATTCCCCGTGG GGCAATA TATT TATTGTC TTTTTCATCAAACTC TERM 1861 1669723 - 1669738 + g 70 -9 -3.09785 | opp_overlap 1669721 CCGTCAGGATACACC GTCAGG ATAT CCTGAC TGTCTTCCACTCTCA TERM 1862 1670436 - 1670418 - R 100 -11.7 -4.77173 | TTTGGACAAAACAAA GGACGGG TTTTT CCCGTCC CAAAATTCTCCGCAG Cthe_1372 1671186 - 1670728 - | hypothetical protein Cthe_1373 1676972 - 1671219 - | YD repeat-containing protein TERM 1863 1676477 - 1676497 + g 79 -9.8 -3.6733 | opp_overlap 1676476, overlap 1676467 TGGTTATTTCAAGAG CCATACCT CTTGA AGGTATGG TTATATCTCTCCTTT Cthe_1374 1677903 - 1677115 - | copper amine oxidase-like protein TERM 1864 1677985 - 1677965 - R 76 -5.5 -5.1244 | opp_overlap 1677944 1677965 TTACCAACATAAAAA CTGCTTTAC TTA ATAAAACAG TTCTATTCCTCTTTA TERM 1865 1678166 - 1678142 - R 100 -15.1 -5.13137 | opp_overlap 1678145 CAAACAAATTAAAAA GGACTGCGACT TTA AGTCACAGTCC CTTAAAACCCGACAG Cthe_1375 1679537 - 1678188 - | aspartate kinase Cthe_1376 1680915 - 1679668 - | homoserine dehydrogenase TERM 1866 1680208 - 1680236 + g 70 -2.6 -5.03409 | overlap 1680207 1680209 1680229 GATGGTTGAATCCAT GCTTT-CGGCATAT TTC ATAT-CCGCAAGGC TTATTTTTTTTATGC Cthe_1377 1681369 - 1680926 - | hypothetical protein TERM 1867 1681496 - 1681479 - R 100 -6.3 -6.08342 | opp_overlap 1681479 1681474 TAATAAACAAAAAAA CACTCTA TCAT CAGAGTG TTTTCTAACTTTAAT Cthe_1378 1683066 - 1681546 - | response regulator receiver modulated metal dependent phosphohydrolase TERM 1868 1682428 - 1682417 - G 72 -3.6 -5.00884 | ATTTCCTCCAAAAAA GCCG GTTC CAGC ATGTCTATAAACTTG TERM 1869 1684328 - 1684347 + G 77 -8 -4.18802 | GATGGAATATGGGGA TGTCAAAA TGGT TTTTGACA TTTTGGACTCTGTAT Cthe_1379 1683369 - 1684457 + | oxidoreductase-like protein TERM 1870 1684478 - 1684518 + T 76 -5.5 -4.98857 | opp_overlap 1684482, overlap 1684480 1684482 AAATGGAATGAATTT AAAACGGGCGCATTT TTTCCGTCTGT AAATGCGCCCGTATA TTTTTATCCTTCACT TERM 1871 1684480 - 1684516 + T 79 -8.1 -4.11322 | opp_overlap 1684482, overlap 1684478 1684482 ATGGAATGAATTTAA AACGGGCGCATTT TTTCCGTCTGT AAATGCGCCCGTA TATTTTTATCCTTCA TERM 1872 1684514 - 1684482 - T 95 -10.7 -4.32201 | opp_overlap 1684480 1684478 1684482 GGAATGAATTTAAAA CGGGCGCATTT TTTCCGTCTGT AAATGCGCCCG TATATTTTTATCCTT TERM 1873 1684482 - 1684514 + T 87 -10.7 -3.63511 | opp_overlap 1684482, overlap 1684480 1684478 GGAATGAATTTAAAA CGGGCGCATTT TTTCCGTCTGT AAATGCGCCCG TATATTTTTATCCTT Cthe_1380 1684903 - 1684529 - | response regulator receiver protein TERM 1874 1685103 - 1685134 + r 79 -10.2 -2.89848 | opp_overlap 1685096, overlap 1685102 CAATTTAAGATTGGA CCCGGGTTTCACTT TTTT AAGTGAAACCCGAA ATTTAATCAGTTTTA Cthe_1381 1686646 - 1685147 - | threonine synthase TERM 1875 1685203 - 1685219 + g 77 -5.1 -4.84761 | ATTTACTGCAAACCT GTTTGTG AAG CACAGGC TTTTTGTCAAGATCT TERM 1876 1686243 - 1686255 + g 84 -6.9 -4.88067 | opp_overlap 1686235 AAAATTACGATTTCA CCGGT TTC GCCGG TTTTTCTCACTGCCT Cthe_1382 1688054 - 1686930 - | patatin TERM 1877 1687781 - 1687793 + g 79 -3.5 -5.40072 | ATGCACTGCTTAAGC TATAT TCC ATATA TTTTTTTACCACCGG Cthe_1383 1689300 - 1688143 - | tetratricopeptide TPR_2 Cthe_1384 1690698 - 1689412 - | FolC bifunctional protein TERM 1878 1689529 - 1689547 + g 77 -6.1 -4.652 | opp_overlap 1689529 1689528 CACCGCATTTACAAT TGTATCA CTTAT TGATACA TTTTTACAATAGTTT secA 1693526 - 1690794 - | preprotein translocase subunit SecA Cthe_1386 1694145 - 1693546 - | hypothetical protein Cthe_1387 1694622 - 1694227 - | hypothetical protein TERM 1879 1694704 - 1694716 + r 85 -4.9 -5.56673 | CCGTTTATCGTAACT TAAGA GTG TCTTA TTTTTTGTTGTACAT Cthe_1388 1695007 - 1694714 - | TrpR like protein, YerC/YecD TERM 1880 1695230 - 1695248 + H 91 -4.6 -6.06723 | TTTATACTCTTATTT CCTCAT AATATAA ATGAGG TTTTTTTTTGCAGGG TERM 1881 1696125 - 1696149 + G 85 -11.5 -3.36492 | opp_overlap 1696122, overlap 1696122 TTAAACATGGAACGG TTACTGCCGTT ATA AACGGCTGTAA TTATGAAATTACCAC Cthe_1389 1695905 - 1697233 + | metal dependent phosphohydrolase Cthe_1390 1697258 - 1698190 + | alpha/beta hydrolase fold TERM 1882 1698259 - 1698206 - T 93 -8.6 -4.88326 | gap 3, opp_overlap 1698207 1698208, overlap 1698208 AAATAAAAATTAAAA TACAGCCTTCATATCAT-TGT-TACCT TTA AGGAACACAGACGATATGAAGGCTG-A TTTTACGTCCTAAAA TERM 1883 1698207 - 1698259 + T 83 -8 -4.21194 | gap 2, opp_overlap 1698206 1698208, overlap 1698208 AATAAAAATTAAAAT ACAGCCTTCATATCAT-TGT-TACCT TTA AGGAACACAGACGATATGAAGGCTGA TTTTACGTCCTAAAA TERM 1884 1698258 - 1698208 - T 100 -13.7 -4.00742 | gap 2, opp_overlap 1698208 1698207, overlap 1698206 ATAAAAATTAAAATA CAGCCTTCATATCAT-TGT-TACCT TTA AGGAACACAGACGATATGAAGGCTG ATTTTACGTCCTAAA TERM 1885 1698208 - 1698258 + T 87 -11.5 -3.12395 | gap 2, opp_overlap 1698206 1698208, overlap 1698207 ATAAAAATTAAAATA CAGCCTTCATATCAT-TGT-TACCT TTA AGGAACACAGACGATATGAAGGCTG ATTTTACGTCCTAAA Cthe_1391 1699863 - 1698328 - | 2-isopropylmalate synthase TERM 1886 1698951 - 1698967 + g 78 -10.9 -3.07344 | AAGTTGATCTTTCCT TCAGGAC ACC GTCCTGA TGTATTCCCGACTCA TERM 1887 1699958 - 1699992 + r 100 -15.7 -3.09749 | opp_overlap 1699958 TTCCCTAACAAAAAA CCCTCCGCACCTGCA AAGTA TGCAGGGGCGAAGGG TATCTCTTCGCGGTA TERM 1888 1699992 - 1699958 - R 100 -17.9 -5.4505 | opp_overlap 1699958 TTCCCTAACAAAAAA CCCTCCGCACCTGCA AAGTA TGCAGGGGCGAAGGG TATCTCTTCGCGGTA TERM 1889 1700265 - 1700278 + r 71 -5.3 -4.55209 | TAGAAAGATTAATTT CAGTT CCGG AACTG TTTCTTTCGTATATC TERM 1890 1700335 - 1700300 - R 100 -15.5 -5.21709 | TCGTATATCAAAAAA CCCTTCACTCCTGCA AACATA CGCAGGGGTGAAGGG TTAAACTCCACGGTA Cthe_1392 1701928 - 1700858 - | integrase catalytic subunit TERM 1891 1701269 - 1701279 + g 74 -4.6 -4.90013 | opp_overlap 1701269 CAAAAGAAACAATAA CTCG TAG CGGG TTTTTCGTTCAGTTA Cthe_1393 1703848 - 1702079 - | multi-sensor signal transduction histidine kinase Cthe_1394 1704561 - 1703851 - | two component transcriptional regulator Cthe_1396 1706445 - 1704901 - | phospholipase D/transphosphatidylase TERM 1892 1705187 - 1705207 + g 81 -11.2 -2.95126 | overlap 1705184 TCATAGATTTTTACG CCGCTTTC AACCA GAAAGCGG TAATTTGACCTTGTA TERM 1893 1705684 - 1705696 + g 74 -6.2 -4.43397 | AATTATCGCTATTTT CCGG TGATC CCGG TTGTTTATTTTGGCA Cthe_1397 1707303 - 1706485 - | glycosyl transferase family protein TERM 1894 1707487 - 1707466 - R 100 -8.7 -6.01187 | AAGCAAATAAAAAAA CCCTGCAGA AAAC TTTGCAGGG TTAACACGATATTTT Cthe_1398 1710066 - 1707538 - | cellulosome enzyme, dockerin type I TERM 1895 1710316 - 1710292 - R 74 -2.2 -5.54079 | gap 1 TTAAAAATCAAAAAA GAAAGA-CGGC AAAA ACCAATCTTTC TTTTTTTGACTCTTC Cthe_1399 1710933 - 1710415 - | C_GCAxxG_C_C family protein Cthe_1400 1712220 - 1710973 - | glycosyl hydrolase 53 TERM 1896 1712522 - 1712533 + H 87 -4.4 -5.89921 | overlap 1712521 TGCTGATTTATAGGT CTCT TGAG AGAG TTTTTTTGTTCTGAT TERM 1897 1716426 - 1716441 + H 74 -5.4 -4.9218 | opp_overlap 1716426 TCCTTTTTTCATGAA CTTTGG TCCT CCAAGG TTTTTATCGTACCTA TERM 1898 1717769 - 1717781 + H 72 -3.4 -5.2197 | GTTCTATATGTATTT GCTT TTCCT AAGC TTTTTGGTTTTTATC TERM 1899 1717977 - 1717991 + H 82 -8.6 -4.08042 | overlap 1717975 ACCTATCCGCCAGTT TCCAGT CAT ACTGGA TGTTTTTATCGTACC TERM 1900 1718443 - 1718463 + H 72 -4.8 -4.9218 | overlap 1718444 ACGGACTTGCAACCG TCTATAAC TTGTT GTTATAGG TTTTTATCGTACCTA TERM 1901 1719304 - 1719294 - H 70 -4 -5.06451 | overlap 1719303 CATTAGCCCAAAAAA TCTT TGA AAGA AGGTGCTCCAACATT Cthe_1401 1719335 - 1719667 + | hypothetical protein TERM 1902 1719692 - 1719711 + T 93 -5 -5.98675 | AAAAAGAAATCAGCC GCAAAGTA TTAT TTCTTTGC TTTTTTATTTTTATA Cthe_1402 1720179 - 1719700 - | DtxR family iron dependent repressor TERM 1903 1720406 - 1720387 - g 80 -2.1 -5.58454 | overlap 1720363 1720391 CCCATAGGAAAAAAA GCAAGAG TAAAAT CCCTTAC CCTGGATGGAACAAT Cthe_1403 1720339 - 1720578 + | hypothetical protein TERM 1904 1720633 - 1720603 - f 74 -9.1 -3.0264 | gap 1 AAATCTGGTCCAACA GGGAGTTCTCCTCA AGTT TG-GCAGAACTCCC TAAAATAAATATTCA TERM 1905 1720888 - 1720874 - g 70 -5.8 -4.44187 | opp_overlap 1720873, overlap 1720870 AGATACAAACATAAA GATAAA AAC TTTATC ATGGTTGATATACCG Cthe_1404 1720661 - 1722811 + | GTP-binding protein, HSR1-related TERM 1906 1722843 - 1722826 - T 82 -9.9 -3.30513 | opp_overlap 1722826 GAAACAAATATTTAA GGAGAGT ATAC ACTCTCC TATGCTCTATATTTT TERM 1907 1722826 - 1722843 + T 79 -9.9 -2.93929 | opp_overlap 1722826 GAAACAAATATTTAA GGAGAGT ATAC ACTCTCC TATGCTCTATATTTT Cthe_1405 1724972 - 1722843 - | spore coat assembly protein-like protein TERM 1908 1724056 - 1724066 + g 72 -3.2 -5.13527 | ATCCCGGATTCATTT GAGT TTT GCTC TTTTGTTTCTTGATT Cthe_1406 1725697 - 1725011 - | hypothetical protein Cthe_1407 1726413 - 1725727 - | hypothetical protein TERM 1909 1727129 - 1727110 - g 83 -3.4 -5.61881 | overlap 1727114 TGCCAAAAACAAAAA CAGGGCGG TAAG CCGCAGTG AACTTCTGGACAAGG Cthe_1408 1726589 - 1727287 + | two component transcriptional regulator TERM 1910 1727740 - 1727727 - g 100 -5.3 -6.11229 | AGTAAAATAAAAAAA TTGGA TGGT TCCAA GGTCCAGGAGTATGT Cthe_1409 1727292 - 1728761 + | periplasmic sensor signal transduction histidine kinase Cthe_1410 1729804 - 1728803 - | cation diffusion facilitator family transporter TERM 1911 1729867 - 1729834 - R 89 -7.5 -5.02476 | gap 1, opp_overlap 1729864, overlap 1729864 ACAGGGTGCAAAAAA CACATCTGCGGA-ATG ACA CTTACCCACAGATGTG CTTGAACACATTTAT Cthe_1411 1730649 - 1729879 - | tryptophan synthase, alpha chain Cthe_1412 1731826 - 1730642 - | tryptophan synthase subunit beta TERM 1912 1731900 - 1731871 - R 100 -7.9 -5.76237 | opp_overlap 1731871 1731872, overlap 1731872 TATATAAATAAAAAA CGCCTTTATCCCT CGAC AGGGACAAAAGCT GTTCACTTCTGCGGT TERM 1913 1731899 - 1731872 - R 100 -11.4 -4.03302 | opp_overlap 1731871 1731872, overlap 1731871 ATATAAATAAAAAAC GCCTTTATCCCT CGAC AGGGACAAAAGC TGTTCACTTCTGCGG Cthe_1413 1734124 - 1732208 - | hypothetical protein TERM 1914 1733071 - 1733059 - G 90 -4.9 -5.53288 | TGCAAGTCAAAAAAA GAAAT ACA ATTTC AATTACAAACATTAA TERM 1915 1733351 - 1733340 - G 79 -5.8 -4.94962 | ACAACTGAAATAAAA GCTG TAAA CAGC ACCGCACCAACTATG Cthe_1414 1735379 - 1734126 - | hypothetical protein Cthe_1415 1736257 - 1735397 - | ABC transporter related protein TERM 1916 1735440 - 1735423 - G 85 -4.1 -5.64274 | overlap 1735426 1735434 TTATCGATAAAAAAA CATCTTC CAAA GAAGGTG CCACAGCTTCGGCAA Cthe_1416 1736588 - 1736259 - | hypothetical protein Cthe_1417 1737687 - 1736605 - | hypothetical protein TERM 1917 1736866 - 1736894 + g 76 -2.3 -5.44119 | opp_overlap 1736868, overlap 1736869 1736871 TACATCATACATATA TAGTTTGGGCGAA GAC TCCGCCCATATAA TTTTTTTACCATCCC TERM 1918 1736871 - 1736889 + g 70 -8.8 -3.31247 | opp_overlap 1736868, overlap 1736869 1736866 CATACATATATAGTT TGGGCGAA GAC TCCGCCCA TATAATTTTTTTACC Cthe_1418 1738384 - 1737698 - | hypothetical protein TERM 1919 1738473 - 1738439 - R 100 -13.1 -4.19177 | opp_overlap 1738435 1738439 ATTTTTCAACATAAA CTTAGCGGTATAAGT TTATT ACTCATACCACTAAG TTTCGCCGTACATCA TERM 1920 1738439 - 1738473 + r 77 -8.7 -3.57792 | opp_overlap 1738439, overlap 1738435 ATTTTTCAACATAAA CTTAGCGGTATAAGT TTATT ACTCATACCACTAAG TTTCGCCGTACATCA Cthe_1419 1739066 - 1738644 - | hypothetical protein TERM 1921 1739047 - 1739057 + g 82 -4 -5.4148 | opp_overlap 1739047 CAAATAATTAAAGCA GTAA CTC TTAC TTTTTTCATTATTTC Cthe_1420 1739773 - 1739177 - | hypothetical protein TERM 1922 1740434 - 1740423 - g 83 -7.2 -4.66814 | AATACAAAGAAGAAA CCGG AAGG CCGG TCTGGACCTATATGT Cthe_1421 1740053 - 1741033 + | signal peptide peptidase SppA, 36K type Cthe_1422 1741011 - 1741784 + | RDD domain-containing protein Cthe_1423 1742980 - 1741874 - | hypothetical protein TERM 1923 1743991 - 1743973 - g 75 -10.3 -3.11768 | overlap 1743971 GCATAGGATGGAATA GGTTCGG TATTT CCGAACC GCTGTGGACAAGCTT TERM 1924 1744245 - 1744229 - g 74 -3.7 -5.05113 | opp_overlap 1744229 GTCAGACAAAGAAAA GCTAAAA AGT TTTAAGC TGTTTAAGCGACTAA Cthe_1424 1743324 - 1744265 + | hypothetical protein TERM 1925 1744660 - 1744675 + G 76 -7.6 -4.2338 | overlap 1744657 ACAATTCAGATTGTT GCGATA TTGA TATCGC TTCTTTCTCTTGGTG TERM 1926 1745545 - 1745558 + G 73 -8.1 -3.87994 | overlap 1745535 ACCACCGCCATTTTT GCCGT ACTT ACGGC TTTGTCAACCTACAT hppA 1744624 - 1746708 + | membrane-bound proton-translocating pyrophosphatase TERM 1927 1746742 - 1746777 + F 100 -17.1 -5.32944 | opp_overlap 1746750 CTTTAATAAGTGTTG CGTAAAAAGCCTTCC TTTCAC GGAAGGCTTTTTGCG TTTTTTGCTTCTAAG TERM 1928 1746769 - 1746750 - f 90 -9.3 -4.56775 | opp_overlap 1746742 AGTGTTGCGTAAAAA GCCTTCC TTTCAC GGAAGGC TTTTTGCGTTTTTTG Cthe_1426 1747073 - 1747807 + | AzlC-like protein TERM 1929 1748011 - 1748026 + G 71 -6.8 -4.01939 | overlap 1748003 1748000 ACGGCACTGCCATCT GCGGCA CTGT TGTCGC TTTAATTCTGGCTTA Cthe_1427 1747812 - 1748114 + | branched-chain amino acid transport Cthe_1428 1749423 - 1748095 - | glycoside hydrolase family protein Cthe_1429 1750353 - 1749454 - | hypothetical protein Cthe_1430 1751410 - 1750397 - | hypothetical protein TERM 1930 1750652 - 1750666 + g 79 -8.6 -4.13652 | GTCAAATATTACCCT TACGGA ATT TCCGTA TCTTTTTATCTCCTT TERM 1931 1752511 - 1752499 - g 83 -3.3 -5.53079 | AAAAGAGACAAAAAA TCCGG AAC CGGGA AGCGGTGAAATAATC Cthe_1431 1751588 - 1753543 + | hypothetical protein TERM 1932 1753823 - 1753794 - T 80 -7.9 -4.28747 | gap 1, opp_overlap 1753800, overlap 1753791 1753800 ACTAAAGATAAATAA TCATAACCACCGGC TCA GCCGATGGTT-TGC TCTAGCCCTATAAGG TERM 1933 1753818 - 1753800 - T 95 -12.4 -3.66742 | opp_overlap 1753800, overlap 1753794 1753791 GATAAATAATCATAA CCACCGGC TCA GCCGATGG TTTGCTCTAGCCCTA TERM 1934 1753800 - 1753818 + T 87 -10.2 -3.83502 | opp_overlap 1753794 1753791 1753800 GATAAATAATCATAA CCACCGGC TCA GCCGATGG TTTGCTCTAGCCCTA TERM 1935 1753905 - 1753916 + T 86 -5.8 -5.47846 | opp_overlap 1753905 ATTCTTCTCAAGCCA CCAC TAAA GTGG TTTTATTTTTTGCTT Cthe_1432 1754395 - 1753919 - | transposase IS200-like protein TERM 1936 1754443 - 1754459 + r 71 -2.3 -5.32882 | overlap 1754403 CAAACCTACATTATT GTAAC AAAGGAG GTTAC TTTTTTCTACTCATA TERM 1937 1754511 - 1754493 - R 100 -14.6 -3.28791 | opp_overlap 1754493 ACTGTCTCTTTAGAA CCACTGGC ATA GCCAGTGG TTTTCTTTAAACAAT TERM 1938 1754493 - 1754511 + r 100 -14.6 -4.87133 | opp_overlap 1754493 ACTGTCTCTTTAGAA CCACTGGC ATA GCCAGTGG TTTTCTTTAAACAAT TERM 1939 1754577 - 1754526 - R 79 -8.8 -3.90744 | opp_overlap 1754530, overlap 1754530 GTTTTCTTTAAACAA TAAACTCCTTCCCGGTAAGAATCA TAAA CAATAAAAACCGGGAAGGAGTTTA TCCAGTCTTATACGC TERM 1940 1754573 - 1754530 - R 71 -5.2 -4.56978 | opp_overlap 1754530, overlap 1754526 TCTTTAAACAATAAA CTCCTTCCCGGTAAGAATCA TAAA CAATAAAAACCGGGAAGGAG TTTATCCAGTCTTAT Cthe_1433 1755358 - 1754585 - | short-chain dehydrogenase/reductase SDR TERM 1941 1754911 - 1754948 + g 76 -3.5 -5.33785 | overlap 1754914 1754915 TGTTACCAACCATGC CGTATATGGAAGAAATA TTAA TAATTCTTCCATACTTG TTTTTTATCATAATT TERM 1942 1754914 - 1754945 + g 80 -6 -4.74611 | overlap 1754911 1754915 TACCAACCATGCCGT ATATGGAAGAAATA TTAA TAATTCTTCCATAC TTGTTTTTTATCATA TERM 1943 1754915 - 1754944 + g 75 -9.5 -3.4314 | overlap 1754914 1754911 ACCAACCATGCCGTA TATGGAAGAAATA TTAA TAATTCTTCCATA CTTGTTTTTTATCAT TERM 1944 1755486 - 1755471 - R 76 -6.2 -4.68779 | opp_overlap 1755471 1755469, overlap 1755468 1755463 AACAAAATAAAATAA TCCATA TTCG TATGGA TATTGTAAAATACGG Cthe_1434 1756103 - 1755513 - | hypothetical protein TERM 1945 1755821 - 1755832 + g 71 -7.2 -3.81689 | TAAAACATTGCAGCA GGGC TTTA GCCC TTTGATACTGCTGTT Cthe_1435 1756854 - 1756273 - | phosphoglycerate mutase TERM 1946 1757383 - 1757354 - R 74 -5.7 -4.57073 | opp_overlap 1757374, overlap 1757357 1757362 1757372 1757374 CATTTGTGGCAAAAA CAATCGAAGCTGT GAGA ACAGCTGCAACCG CAACTATTACAACCC TERM 1947 1757380 - 1757357 - R 72 -6 -4.40561 | opp_overlap 1757374, overlap 1757354 1757362 1757372 1757374 TTGTGGCAAAAACAA TCGAAGCTGT GAGA ACAGCTGCAA CCGCAACTATTACAA TERM 1948 1757458 - 1757476 + r 72 -9 -2.74523 | opp_overlap 1757460 1757462 1757472, overlap 1757455 1757460 ATGCAATTATTGTAA TAGACTTA ATT TAAGTCTA TCGTGTTAGACCTCA TERM 1949 1757597 - 1757572 - R 100 -11.2 -5.186 | opp_overlap 1757572 CAAAATATATAAAAA TGAGTTGCCG AATTAG CGGCAACCCA TTTCTTAATTATATT TERM 1950 1757572 - 1757597 + r 89 -9 -4.39107 | opp_overlap 1757572 CAAAATATATAAAAA TGAGTTGCCG AATTAG CGGCAACCCA TTTCTTAATTATATT Cthe_1437 1758538 - 1757636 - | hypothetical protein Cthe_1438 1759043 - 1758540 - | ECF subfamily RNA polymerase sigma-24 factor TERM 1951 1759198 - 1759186 - R 79 -3.5 -5.69023 | overlap 1759177 AAAATATTAAAAAAA TTTTT AAA AAAAA TAAATCCCCCTTCGG Cthe_1439 1759595 - 1759251 - | hypothetical protein Cthe_1440 1759922 - 1759719 - | hypothetical protein Cthe_1441 1760511 - 1759924 - | hypothetical protein TERM 1952 1760293 - 1760322 + g 83 -7.1 -4.8083 | overlap 1760294 1760295 GTGTCGTGAAAGCCA GTCCTGTTCTTCC TCCG GGAGGGACAGGGA TTTTTCGTAATATTG TERM 1953 1760294 - 1760321 + g 82 -10.6 -3.47413 | overlap 1760293 1760295 TGTCGTGAAAGCCAG TCCTGTTCTTCC TCCG GGAGGGACAGGG ATTTTTCGTAATATT TERM 1954 1760295 - 1760320 + g 81 -11.9 -2.67364 | overlap 1760294 1760293 GTCGTGAAAGCCAGT CCTGTTCTTCC TCCG GGAGGGACAGG GATTTTTCGTAATAT Cthe_1442 1761386 - 1760511 - | ATP-dependent transcriptional regulator-like protein TERM 1955 1761553 - 1761515 - R 85 -3 -5.94597 | overlap 1761520 1761522 CAATATCAAAAAAAA TAAAACAGACCCGCGGAA CAA TCCCACAGGCCGGTTATT GTATTACTATCTTCC TERM 1956 1761548 - 1761520 - R 100 -7.3 -5.66926 | overlap 1761515 1761522 TCAAAAAAAATAAAA CAGACCCGCGGAA CAA TCCCACAGGCCGG TTATTGTATTACTAT TERM 1957 1761546 - 1761522 - R 88 -8.5 -4.41355 | overlap 1761520 1761515 AAAAAAAATAAAACA GACCCGCGGAA CAA TCCCACAGGCC GGTTATTGTATTACT Cthe_1443 1762483 - 1761560 - | hypothetical protein TERM 1958 1762837 - 1762803 - R 77 -4.3 -5.27476 | opp_overlap 1762804, overlap 1762787 1762804 CGGAATAAAACAAAA GCCGGAATAACCC TTGATTTTC GGTTTATTCCGGT TAATTTCCAAAGATA TERM 1959 1762804 - 1762836 + r 71 -7.8 -3.51411 | opp_overlap 1762787 1762804 1762803 GGAATAAAACAAAAG CCGGAATAACCC TTGATTTTC GGTTTATTCCGG TTAATTTCCAAAGAT TERM 1960 1762836 - 1762804 - R 73 -7.8 -3.74859 | opp_overlap 1762804, overlap 1762787 1762803 GGAATAAAACAAAAG CCGGAATAACCC TTGATTTTC GGTTTATTCCGG TTAATTTCCAAAGAT Cthe_1444 1763291 - 1762866 - | GCN5-related N-acetyltransferase Cthe_1445 1763797 - 1763552 - | uncharacterized Zn-finger protein TERM 1961 1766366 - 1766356 - g 78 -2.6 -5.39721 | TGAGGATATAAAAAA TATA CCC TATA ATCAATTAAATGCAG Cthe_1446 1764431 - 1766968 + | peptidase S1 and S6, chymotrypsin/Hap TERM 1962 1767009 - 1767041 + T 100 -13.5 -3.2348 | TGAAATCATTGGAGG GCTTCAGGTGGAGAT TTC AACTCCACTTGAGGC TTAAATATTAATTTT Cthe_1447 1767849 - 1767313 - | hypothetical protein Cthe_1448 1769606 - 1768194 - | MATE efflux family protein Cthe_1449 1770061 - 1769603 - | MarR family transcriptional regulator TERM 1963 1769973 - 1769957 - G 73 -2.2 -5.29782 | opp_overlap 1769944 CAGAGCCATAAAAAA CGGC TCTTCTGCT GCCG TAAGATTGTATTGAC TERM 1964 1770089 - 1770118 + r 74 -7.3 -3.97056 | opp_overlap 1770095 1770097 CAAAAGAATTATATT GAAAAATGGTTGA GCTG TCAACTAATTTTC TTTCCTATGTTGTTG TERM 1965 1770211 - 1770180 - R 100 -9.6 -4.98103 | CAATAAAATACAAAA GCGGACATATTA TCTTTCTG TAACATGTCCGC CCATAAAGCTTTAAA TERM 1966 1770261 - 1770274 + r 72 -2.4 -5.45652 | CTGTTCAGGCTATTT TGCA CATCTT TGCA TTTTTTCTTCCGGAT Cthe_1450 1771149 - 1770364 - | hypothetical protein Cthe_1451 1771826 - 1771353 - | GCN5-related N-acetyltransferase TERM 1967 1772208 - 1772235 + H 100 -9.3 -5.80951 | opp_overlap 1772208 1772206 TGCAATGCAATAATA CTTACCCTTTT AGTAAA AAGAGGGTAAG TTTTTTATTTTGCCT Cthe_1452 1772311 - 1773966 + | KWG repeat-containing protein Cthe_1454 1774879 - 1774454 - | hypothetical protein Cthe_1455 1775683 - 1775009 - | hypothetical protein TERM 1968 1775818 - 1775794 - R 100 -10.8 -4.86862 | GTTAAAAAATTAAAA GACGTGAAAG TATTT CCTTCACGTC AATAATCCATACTTA Cthe_1456 1776647 - 1775862 - | ABC transporter related protein Cthe_1457 1777324 - 1776662 - | polar amino acid ABC transporter, inner membrane subunit TERM 1969 1777045 - 1777035 - G 75 -5.4 -4.78237 | overlap 1777036 TAGTTGATAACAAAA GCAA CGG TTGC TGCAACAAAACGTCC TERM 1970 1777211 - 1777197 - G 71 -4.2 -4.98436 | overlap 1777198 CGAAGAGGATAAAAA CGGCTC ATC GAACCA AAAGCAATTATCATC TERM 1971 1777346 - 1777384 + r 79 -2.4 -5.80248 | gap 1, opp_overlap 1777348, overlap 1777348 TTTACCTCAATATAC AAGCGGATAGACGAAAG ACCTGC CTTCCGCC-ATCCGCTC TTTTTTTATGTATTA TERM 1972 1777382 - 1777348 - R 86 -10.1 -3.68738 | gap 1, opp_overlap 1777348 1777346 TACCTCAATATACAA GCGGATAGACGAAAGA CCTG CCTTCCGCC-ATCCGC TCTTTTTTTATGTAT Cthe_1458 1778217 - 1777408 - | extracellular solute-binding protein TERM 1973 1777709 - 1777724 + g 78 -4 -5.24129 | overlap 1777710 GCCTTCTTTAAATTC TCATCA GCCA TGATGG TTTTTTCTCCGGCAG Cthe_1459 1779544 - 1778417 - | hypothetical protein Cthe_1460 1779940 - 1779581 - | hypothetical protein Cthe_1461 1780355 - 1781920 + | FAD dependent oxidoreductase TERM 1974 1781919 - 1781966 + T 100 -11.6 -4.05931 | gap 1, opp_overlap 1781925, overlap 1781925 TTAAAGACAATTTTT AACAAATCGGCAGAGAAAGGT TGTTAAT ACCTTTTTCTGCCGATT-GTA TTCTTATTCATTATT TERM 1975 1781961 - 1781925 - T 100 -13.9 -4.18702 | opp_overlap 1781925 1781919 ACAATTTTTAACAAA TCGGCAGAGAAAGGT TGTTAAT ACCTTTTTCTGCCGA TTGTATTCTTATTCA TERM 1976 1781925 - 1781961 + T 100 -16.1 -3.90645 | opp_overlap 1781925, overlap 1781919 ACAATTTTTAACAAA TCGGCAGAGAAAGGT TGTTAAT ACCTTTTTCTGCCGA TTGTATTCTTATTCA TERM 1977 1782159 - 1782129 - T 76 -3.3 -5.39755 | TATAAGTATAAAAAA GAGAATGCCTTAT ATTAA AAACGACATTCTC TCGTTGCTGCCCAAT Cthe_1462 1782522 - 1782208 - | XRE family transcriptional regulator Cthe_1463 1782895 - 1782548 - | hypothetical protein Cthe_1464 1783288 - 1783007 - | endoribonuclease L-PSP TERM 1978 1783363 - 1783373 + r 74 -6.8 -4.21974 | TGACTGTAACAACCT GGCT GTA AGCC TTTATTAAATAATCC Cthe_1465 1783948 - 1783496 - | redoxin TERM 1979 1784142 - 1784132 - R 74 -6.8 -4.16279 | opp_overlap 1784132 1784139 CATATCATTTTAAAA CTGC GTG GCAG TCCCTTTGGAATGCT TERM 1980 1784196 - 1784227 + r 76 -3.7 -5.37043 | gap 1, opp_overlap 1784196, overlap 1784186 1784223 TCCTTGCTTCTTAAA GCTCCCTTCCCTGT CATGA AC-GGGAACGCAGC TTTTTTATCTGCCGT Cthe_1466 1784754 - 1784209 - | hypothetical protein Cthe_1467 1785100 - 1784873 - | hypothetical protein Cthe_1468 1785138 - 1785398 + | hypothetical protein TERM 1981 1785388 - 1785423 + F 85 -10.7 -3.55528 | opp_overlap 1785393, overlap 1785393 TTATAAAAAGGCATG AAAAAGCATAAATCC AATCAA GGATTTATGCTTTTA TATATTTTTCAACTT TERM 1982 1785393 - 1785418 + F 100 -10.6 -4.82548 | opp_overlap 1785393, overlap 1785388 AAAAGGCATGAAAAA GCATAAATCC AATCAA GGATTTATGC TTTTATATATTTTTC TERM 1983 1785418 - 1785393 - f 100 -10.6 -4.79667 | opp_overlap 1785388 1785393 AAAAGGCATGAAAAA GCATAAATCC AATCAA GGATTTATGC TTTTATATATTTTTC Cthe_1469 1785797 - 1786909 + | integrase catalytic subunit Cthe_1470 1787110 - 1787727 + | ECF subfamily RNA polymerase sigma-24 factor TERM 1984 1789309 - 1789298 - g 70 -3 -5.08255 | ATCCGCAAAAGAAAA TCAT TTTG ATGA AGCACTTAAAGAGTA TERM 1985 1789386 - 1789354 - g 82 -4.2 -5.51165 | overlap 1789345 1789344 AAAACCTGAAAAAAA TTTCAATACTGGAC AATCA GCCCATTCTTGAAA CATTGCAAAATTTTT Cthe_1471 1787724 - 1789409 + | glycoside hydrolase family protein TERM 1986 1789432 - 1789457 + F 100 -10.5 -5.69262 | TTATTGATTTTCTCC TGCCGGTTATT TAAA AATATCCGGCA TTTTTGTTTTTATAA Cthe_1472 1789679 - 1792381 + | carbohydrate-binding family 11 protein TERM 1987 1792618 - 1792579 - T 84 -10.2 -3.428 | gap 1, opp_overlap 1792582 1792583 1792593 AAAGAAAGGGGACAA CATACAGGCAATCCTGCTT TAT AAGCATT-TTGCCTGTATG AAATTCACAAAAGCT TERM 1988 1792593 - 1792605 + T 70 -6.3 -4.26188 | opp_overlap 1792579, overlap 1792583 1792582 ACATACAGGCAATCC TGCTT TAT AAGCA TTTTGCCTGTATGAA Cthe_1473 1793160 - 1792597 - | NADPH-dependent FMN reductase TERM 1989 1793449 - 1793461 + r 76 -3.4 -5.47821 | TTATACCAAAAGCCC GGAT GTATG ATCC TTTTTTTACATAAAT Cthe_1474 1793829 - 1793584 - | hypothetical protein Cthe_1475 1795388 - 1794471 - | hypothetical protein TERM 1990 1795463 - 1795437 - R 71 -8.2 -3.35934 | opp_overlap 1795423 1795439, overlap 1795439 TTATAGACTTCACAA CATTAGTCTATA TCA TATAGACTAATT TGTCAATTATGATTT TERM 1991 1795439 - 1795461 + r 93 -10.8 -4.00468 | opp_overlap 1795439 1795437, overlap 1795423 ATAGACTTCACAACA TTAGTCTATA TCA TATAGACTAA TTTGTCAATTATGAT TERM 1992 1795461 - 1795439 - R 85 -10.8 -3.24633 | opp_overlap 1795423 1795439, overlap 1795437 ATAGACTTCACAACA TTAGTCTATA TCA TATAGACTAA TTTGTCAATTATGAT Cthe_1476 1795752 - 1795549 - | hypothetical protein Cthe_1477 1796318 - 1795782 - | dCTP deaminase TERM 1993 1796067 - 1796047 - G 77 -6.1 -4.63218 | CGCCCCTCAACAAAA GCCGTCAAA TTG TTTGGCAGC TCAAAGTATTCCATT Cthe_1478 1796766 - 1797326 + | TetR family transcriptional regulator TERM 1994 1797335 - 1797388 + F 76 -6.1 -4.7254 | gap 1, opp_overlap 1797334 1797341, overlap 1797336 1797339 1797353 CAAATAACATATATC CCA-ACACCGACCCTGATATGCCTAA ATT TTAGGCATTTTGCCGTCGGTGTCTGA TTTTTAGTCAAAAAT TERM 1995 1797336 - 1797387 + F 80 -9.6 -3.43042 | gap 1, opp_overlap 1797334 1797341, overlap 1797335 1797339 1797353 AAATAACATATATCC CA-ACACCGACCCTGATATGCCTAA ATT TTAGGCATTTTGCCGTCGGTGTCTG ATTTTTAGTCAAAAA TERM 1996 1797339 - 1797383 + F 88 -11.5 -3.20218 | opp_overlap 1797334 1797341, overlap 1797336 1797335 1797353 TAACATATATCCCAA CACCGACCCTGATATGCCTAA ATT TTAGGCATTTTGCCGTCGGTG TCTGATTTTTAGTCA TERM 1997 1797353 - 1797369 + F 86 -9.5 -4.15006 | opp_overlap 1797341 1797334, overlap 1797339 1797336 1797335 ACACCGACCCTGATA TGCCTAA ATT TTAGGCA TTTTGCCGTCGGTGT TERM 1998 1797406 - 1797434 + F 100 -11 -5.80248 | opp_overlap 1797405 1797404 TTTAGTCAAAAATTT TGTCCGTGCCCA TTTTT TAGGCACGGGCA TTTTTTTGTCTGTTG TERM 1999 1797648 - 1797638 - g 75 -5.4 -4.70626 | GAACAATCGGAAAAA TGCT CGG AGCA GTCATGGTTTTGTTT Cthe_1479 1797508 - 1798116 + | hypothetical protein TERM 2000 1798932 - 1798921 - g 72 -4.4 -4.78572 | opp_overlap 1798921 TTGCAATCAACAAAA CACT GGCA AGTG TTATAGGAAGTTCGG TERM 2001 1800079 - 1800099 + G 82 -8.3 -4.27443 | TTATGGCCCGTGGTG CCATCATCA GTA TGCTGATGG TTATTTTCGTGCTGC Cthe_1480 1798113 - 1800218 + | hypothetical protein TERM 2002 1801366 - 1801323 - g 83 -9.8 -3.91027 | gap 1, opp_overlap 1801339, overlap 1801339 CAATGATACATTAAA CGACGGTGCAAAAAA-AGTTT TTG AAACTATCCTTTCCACCGCCG AGACACAATTAAAAG TERM 2003 1801349 - 1801339 - g 82 -4 -5.41143 | opp_overlap 1801339, overlap 1801323 GACGGTGCAAAAAAA GTTT TTG AAAC TATCCTTTCCACCGC Cthe_1481 1800208 - 1802520 + | membrane protein-like protein TERM 2004 1802624 - 1802567 - T 100 -21.9 -3.57462 | gap 1, opp_overlap 1802576 1802579, overlap 1802569 1802571 1802576 1802579 1802605 TATGGTATCTTGAAA CATATGTAAGAATGGGTATTCTTTTCAG TAC CTGAAAAGAATACCCATTCTT-CACATT ACAACCTTCCCATAT TERM 2005 1802622 - 1802569 - T 100 -24.5 -3.36515 | gap 1, opp_overlap 1802576 1802579, overlap 1802567 1802571 1802576 1802579 1802605 TGGTATCTTGAAACA TATGTAAGAATGGGTATTCTTTTCAG TAC CTGAAAAGAATACCCATTCTT-CACA TTACAACCTTCCCAT TERM 2006 1802622 - 1802571 - T 100 -25.8 -3.25204 | gap 1, opp_overlap 1802576 1802579, overlap 1802569 1802567 1802576 1802579 1802605 GTATCTTGAAACATA TGT-AAGAATGGGTATTCTTTTCAG TAC CTGAAAAGAATACCCATTCTTCACA TTACAACCTTCCCAT TERM 2007 1802616 - 1802576 - T 100 -25.9 -3.21872 | opp_overlap 1802576 1802579, overlap 1802569 1802571 1802567 1802579 1802605 TTGAAACATATGTAA GAATGGGTATTCTTTTCAG TAC CTGAAAAGAATACCCATTC TTCACATTACAACCT TERM 2008 1802579 - 1802613 + T 100 -21.8 -3.68222 | opp_overlap 1802579 1802576 1802569 1802571 1802567 1802605, overlap 1802576 AAACATATGTAAGAA TGGGTATTCTTTTCAG TAC CTGAAAAGAATACCCA TTCTTCACATTACAA TERM 2009 1802613 - 1802579 - T 100 -21.8 -3.73904 | opp_overlap 1802576 1802579, overlap 1802576 1802569 1802571 1802567 1802605 AAACATATGTAAGAA TGGGTATTCTTTTCAG TAC CTGAAAAGAATACCCA TTCTTCACATTACAA Cthe_1482 1803438 - 1802623 - | Cof-like hydrolase Cthe_1483 1804499 - 1803441 - | hypothetical protein TERM 2010 1804648 - 1804609 - R 100 -13.8 -4.31835 | opp_overlap 1804609 AATTTTCATAACAAA TTAGTCAGTACTGACTAC AATT GTAACCCGTACTGACTAA TTGTCAAGAATTTCA TERM 2011 1804609 - 1804648 + r 78 -9.4 -3.32294 | opp_overlap 1804609 AATTTTCATAACAAA TTAGTCAGTACTGACTAC AATT GTAACCCGTACTGACTAA TTGTCAAGAATTTCA Cthe_1484 1805443 - 1804733 - | transcriptional regulator Cthe_1485 1806820 - 1805567 - | beta-lactamase-like protein TERM 2012 1805819 - 1805805 - G 70 -7.8 -3.66874 | CCAAGCTCATTCAAA GCCGAT GCA ACCGGC GGGAAAAGCTTGTAC Cthe_1486 1807328 - 1806933 - | NUDIX hydrolase Cthe_1487 1807744 - 1807346 - | hypothetical protein TERM 2013 1807950 - 1807940 - R 76 -5.4 -4.99035 | GTATTTACATAAAAA CTCA ACA TGAG AAAACCTTTATTCAT TERM 2014 1808056 - 1808014 - R 78 -9.5 -3.25356 | gap 1, opp_overlap 1808022 1808028, overlap 1808028 TCACAACTAACTCAA GGCT-AAATAAAAAAGATGA ATAC TCATCTTTTTCGTTTTAGCC TCAACTAACTTCAAT TERM 2015 1808041 - 1808028 - R 87 -5.3 -5.64421 | opp_overlap 1808028 1808022, overlap 1808014 AGGCTAAATAAAAAA GATGA ATAC TCATC TTTTTCGTTTTAGCC TERM 2016 1808028 - 1808041 + r 76 -5.3 -5.0925 | opp_overlap 1808014 1808028, overlap 1808022 AGGCTAAATAAAAAA GATGA ATAC TCATC TTTTTCGTTTTAGCC Cthe_1488 1810406 - 1808130 - | methyl-accepting chemotaxis sensory transducer Cthe_1489 1810721 - 1810455 - | hypothetical protein Cthe_1491 1811800 - 1811483 - | PadR family transcriptional regulator TERM 2017 1811826 - 1811872 + r 100 -27.2 -3.82061 | opp_overlap 1811833 1811842 1811846 1811849 1811852, overlap 1811842 1811844 CTTTCCATAGTGTGG CTATATAGTTCAACTATACAGT ATA ACTGTATAGTTGAACTATATAG TTATATTATATATAG TERM 2018 1811865 - 1811833 - R 100 -19.5 -2.87344 | opp_overlap 1811826 1811842 1811844, overlap 1811842 1811846 1811849 1811852 TAGTGTGGCTATATA GTTCAACTATACAGT ATA ACTGTATAGTTGAAC TATATAGTTATATTA TERM 2019 1811842 - 1811882 + r 79 -10.1 -2.79501 | opp_overlap 1811833 1811842 1811846 1811849 1811852 1811881, overlap 1811826 1811844 1811881 TATATAGTTCAACTA TACAGTATAACTGTATAGT TGA ACTATATAGTTATATTATA TATAGTCAAACTGTA Cthe_1492 1813640 - 1812018 - | NAD(P)H dehydrogenase (quinone) TERM 2020 1812752 - 1812784 + g 71 -9.9 -2.85346 | overlap 1812751 1812771 1812773 ACGGTGTCTCAATTC TTGTTGTTGCCGGCA AAC TGCCGGCGGTAAAAA CTTTGCTGCCGTCTT TERM 2021 1812771 - 1812797 + g 77 -9.4 -3.55563 | overlap 1812752 1812751 1812773 TGTTGCCGGCAAACT GCCGGCGGTAAA AAC TTTGCTGCCGTC TTTCCCCAATAAAAT TERM 2022 1812773 - 1812795 + g 80 -10.6 -3.35597 | overlap 1812752 1812751 1812771 TTGCCGGCAAACTGC CGGCGGTAAA AAC TTTGCTGCCG TCTTTCCCCAATAAA TERM 2023 1813510 - 1813495 - G 75 -5.4 -4.77036 | gap 1, opp_overlap 1813501, overlap 1813497 CTCCAGCAGCAAAAA CAGCCCT TGC AGGGC-G ATAAATTCAGCCTGG TERM 2024 1813509 - 1813497 - G 83 -9.1 -4.00443 | opp_overlap 1813501, overlap 1813495 CCAGCAGCAAAAACA GCCCT TGC AGGGC GATAAATTCAGCCTG Cthe_1493 1814251 - 1813637 - | PadR family transcriptional regulator TERM 2025 1814234 - 1814193 - G 93 -14.1 -2.83343 | opp_overlap 1814193, overlap 1814195 ATATTTATCACCACA TATTCCACTTGTATAATAT TATT ATATTCCACAAGTGGAATA TTGTCAATATATAAC TERM 2026 1814193 - 1814234 + g 86 -11.9 -3.41125 | opp_overlap 1814193 1814195 ATATTTATCACCACA TATTCCACTTGTATAATAT TATT ATATTCCACAAGTGGAATA TTGTCAATATATAAC TERM 2027 1814232 - 1814195 - G 84 -12.3 -2.96395 | opp_overlap 1814193, overlap 1814193 ATTTATCACCACATA TTCCACTTGTATAATAT TATT ATATTCCACAAGTGGAA TATTGTCAATATATA Cthe_1494 1814690 - 1814277 - | hypothetical protein TERM 2028 1814800 - 1814753 - R 80 -5.6 -5.19212 | overlap 1814756 ATGATTACCAAAAAA CAATTGAGCTTTATCGAGAAAG AACT CATTCTCGAAAAAGCCCAAAAA TACGCCACATTCTAC TERM 2029 1814797 - 1814756 - R 100 -13.9 -4.68456 | overlap 1814753 ATTACCAAAAAACAA TTGAGCTTTATCGAGAAAG AACT CATTCTCGAAAAAGCCCAA AAATACGCCACATTC Cthe_1495 1815234 - 1814842 - | pyridoxamine 5'-phosphate oxidase-related, FMN-binding TERM 2030 1816199 - 1816189 - g 74 -4.6 -4.90013 | opp_overlap 1816189 TAACTGAACGAAAAA CCCG CTA CGAG TTATTGTTTCTTTTG Cthe_1496 1815540 - 1816610 + | integrase catalytic subunit Cthe_1497 1817465 - 1816827 - | hypothetical protein TERM 2031 1817703 - 1817661 - R 73 -7.9 -3.61609 | gap 1, opp_overlap 1817660 1817662, overlap 1817663 1817668 TCATTCAAATCAGAA TAT-GCAATTGAGGGATGGA GAAT TCCATCCCTCAAACGTAATA AATTTTAACGGAATC TERM 2032 1817700 - 1817663 - R 91 -12.1 -3.38112 | opp_overlap 1817662 1817660, overlap 1817661 1817668 ATTCAAATCAGAATA TGCAATTGAGGGATGGA GAAT TCCATCCCTCAAACGTA ATAAATTTTAACGGA TERM 2033 1817695 - 1817668 - R 100 -17.2 -3.22841 | opp_overlap 1817662 1817660, overlap 1817663 1817661 AATCAGAATATGCAA TTGAGGGATGGA GAAT TCCATCCCTCAA ACGTAATAAATTTTA Cthe_1498 1819552 - 1817744 - | methyl-accepting chemotaxis sensory transducer TERM 2034 1820293 - 1820335 + H 91 -10.7 -4.07568 | gap 1, opp_overlap 1820293 1820295 1820296 1820300, overlap 1820296 TATTATAATAAGTAA TAGC-GAAGGCGCTGTTGGC AAAG GTCAGCAACGCCTTCAGTTA TTTTAGGGGGAAAGG TERM 2035 1820296 - 1820332 + H 93 -10.2 -4.17048 | gap 1, opp_overlap 1820295 1820293 1820296 1820300, overlap 1820293 TATAATAAGTAATAG C-GAAGGCGCTGTTGGC AAAG GTCAGCAACGCCTTCAG TTATTTTAGGGGGAA TERM 2036 1820331 - 1820296 - H 80 -10.4 -2.61042 | opp_overlap 1820296 1820293, overlap 1820295 1820293 1820300 TATAATAAGTAATAG CGAAGGCGCTGTTGGC AAAG GTCAGCAACGCCTTCA GTTATTTTAGGGGGA TERM 2037 1820483 - 1820530 + H 100 -10.8 -5.40072 | opp_overlap 1820488, overlap 1820480 1820484 1820488 AAAACTTAATTGCGC ACAAAGGCGTGTGTTTTATTGA TGCC TCAATAAAATACACGCCTTCAA TTTTTTTAAGGAGGA TERM 2038 1820484 - 1820529 + H 100 -14.3 -3.83561 | opp_overlap 1820488, overlap 1820480 1820483 1820488 AAACTTAATTGCGCA CAAAGGCGTGTGTTTTATTGA TGCC TCAATAAAATACACGCCTTCA ATTTTTTTAAGGAGG TERM 2039 1820488 - 1820525 + H 100 -19.5 -3.58247 | opp_overlap 1820488, overlap 1820480 1820484 1820483 TTAATTGCGCACAAA GGCGTGTGTTTTATTGA TGCC TCAATAAAATACACGCC TTCAATTTTTTTAAG TERM 2040 1820525 - 1820488 - H 100 -17.3 -3.87869 | opp_overlap 1820480 1820484 1820483 1820488 TTAATTGCGCACAAA GGCGTGTGTTTTATTGA TGCC TCAATAAAATACACGCC TTCAATTTTTTTAAG TERM 2041 1821521 - 1821543 + G 71 -6.2 -4.19258 | overlap 1821523 CCCAGTCGGCGCAAC TTCCGTACAC CTG GTGTGCGGTG TTTTCGGTACGCTCT TERM 2042 1821523 - 1821541 + G 83 -11 -3.69483 | overlap 1821521 CAGTCGGCGCAACTT CCGTACAC CTG GTGTGCGG TGTTTTCGGTACGCT TERM 2043 1821769 - 1821757 - g 80 -7.7 -4.44667 | GCCTTGAAGAAGAAA TCCAG GGT CTGGA CATCGGTGAACACGG Cthe_1499 1820553 - 1822307 + | ammonium transporter TERM 2044 1822400 - 1822348 - T 100 -11.4 -4.17906 | opp_overlap 1822355, overlap 1822355 AATGAAAGCAAATAA CATTTAAGCAGGGAACATAACAGG CCAAC CCTAATATGTTCCCTGCTTTTTTG CTGTGTTATTATTCC TERM 2045 1822393 - 1822355 - T 100 -16.9 -3.2661 | opp_overlap 1822355, overlap 1822348 GCAAATAACATTTAA GCAGGGAACATAACAGG CCAAC CCTAATATGTTCCCTGC TTTTTTGCTGTGTTA TERM 2046 1822355 - 1822393 + T 100 -14.7 -5.27399 | opp_overlap 1822348 1822355 GCAAATAACATTTAA GCAGGGAACATAACAGG CCAAC CCTAATATGTTCCCTGC TTTTTTGCTGTGTTA Cthe_1500 1824322 - 1822430 - | ABC transporter related protein TERM 2047 1823122 - 1823138 + g 71 -5.1 -4.56775 | overlap 1823124 CGGTTTTTCCCGGTA CATAACC AAA GGTTACG TTTTTCAACACCACT Cthe_1501 1826139 - 1824403 - | ABC transporter, transmembrane region Cthe_1502 1826633 - 1826160 - | MarR family transcriptional regulator Cthe_1503 1826909 - 1827268 + | hypothetical protein TERM 2048 1827378 - 1827368 - g 79 -5.4 -4.93877 | CGGCAGCAAAGAAAA TCCT GAC AGGA AGAAGATTTATAAGC Cthe_1504 1827280 - 1828092 + | Linocin_M18 bacteriocin protein TERM 2049 1828109 - 1828136 + T 100 -10.6 -4.97461 | opp_overlap 1828106 ACGCGAAAAAGCTCA TCCTCCGGTG GCATTAAG CGCCGGAGGA TTTTTAATGTTTGTT Cthe_1505 1828914 - 1828243 - | S-layer-like domain-containing protein Cthe_1506 1830511 - 1829489 - | metal dependent phosphohydrolase TERM 2050 1830736 - 1830793 + r 74 -8.8 -3.18118 | gap 1, opp_overlap 1830736, overlap 1830739 AAGTAAACTTTAATA TGCTCC-CCTTACAGTAGACAGT GAAAATATAAAAA ACTGTTTACTGTAAGGAGGATCA TATCTTATGGGATGA TERM 2051 1830739 - 1830790 + r 72 -9.1 -2.78526 | gap 1, opp_overlap 1830736, overlap 1830736 TAAACTTTAATATGC TCC-CCTTACAGTAGACAGT GAAAATATAAAAA ACTGTTTACTGTAAGGAGGA TCATATCTTATGGGA Cthe_1507 1831620 - 1831162 - | hypothetical protein Cthe_1508 1832206 - 1831850 - | hypothetical protein TERM 2052 1832051 - 1832066 + g 72 -4.6 -4.82901 | overlap 1832053 ATTGAAAAATTTATT CAGCGG CAGC CCGCTC TTTTTATGCCAGCCC TERM 2053 1832053 - 1832064 + g 73 -7.2 -4.03995 | overlap 1832051 TGAAAAATTTATTCA GCGG CAGC CCGC TCTTTTTATGCCAGC TERM 2054 1833034 - 1833012 - R 76 -3.3 -5.44198 | AATAAATAATAAAAA CCCGAGGTT ATTGA ATCCCCGAG TTTTCGTAAGCACTT Cthe_1509 1834298 - 1833063 - | hypothetical protein Cthe_1510 1835314 - 1834571 - | short-chain dehydrogenase/reductase SDR Cthe_1511 1836381 - 1835392 - | DNA methylase N-4/N-6 Cthe_1512 1837318 - 1836386 - | Type II site-specific deoxyribonuclease Cthe_1513 1838269 - 1837328 - | DNA adenine methylase TERM 2055 1838848 - 1838836 - g 70 -5.5 -4.42464 | AAGTTCTTAAACAAA TCGCC CAG GACGA ACTATCCCACCATAA Cthe_1514 1838700 - 1839578 + | hypothetical protein TERM 2056 1839586 - 1839620 + T 89 -7.9 -4.93365 | opp_overlap 1839586 ATGTTTAAAATATGA GGCAGGGGACG GTTCCGAGTTCTA TGTCCCCTGCC TTTTTGCTTATGCCC Cthe_1515 1840232 - 1839648 - | GCN5-related N-acetyltransferase Cthe_1516 1841260 - 1840229 - | ribosome small subunit-dependent GTPase A TERM 2057 1841026 - 1841057 + g 77 -11 -2.91264 | overlap 1841032 TCCTTTTAAGGGTCT TTACAATCCGGCTG TCAC CATCTGGATTGTAA TCTATGAGTACAAAA TERM 2058 1841103 - 1841121 + g 71 -3.8 -4.87626 | overlap 1841106 AAATCTTCAAATCCA CCGGCATA ATA TATGCTTG TTTTTAGTCTTCCAA TERM 2059 1841106 - 1841118 + g 77 -6.3 -4.53398 | overlap 1841103 TCTTCAAATCCACCG GCATA ATA TATGC TTGTTTTTAGTCTTC TERM 2060 1841409 - 1841391 - R 83 -6.7 -4.7889 | overlap 1841381 ACAAATATGCAAAAA GCACACC TCTTC GATGTGC TACGATATTTACAGT TERM 2061 1841486 - 1841472 - R 78 -5.7 -4.75288 | GCACAGCAAAAGAAA GGTGT ATGTA ACACC AAACACAAAATCTCA Cthe_1517 1842830 - 1841721 - | type I phosphodiesterase/nucleotide pyrophosphatase Cthe_1518 1843198 - 1843440 + | hypothetical protein Cthe_1519 1843585 - 1844814 + | SAM-dependent methyltransferase Cthe_1520 1845370 - 1844828 - | hypothetical protein Cthe_1521 1845916 - 1845401 - | hypothetical protein Cthe_1522 1846765 - 1846127 - | NADPH-dependent FMN reductase TERM 2062 1848192 - 1848181 - g 75 -3 -5.31877 | ATCCATGACAAAAAA TCAT AAAA ATGA ATACCATCGCAGTAT Cthe_1523 1846955 - 1848835 + | glycosyl transferase, group 1 TERM 2063 1848855 - 1848813 - T 100 -17.3 -5.40072 | gap 1, opp_overlap 1848808 1848816 1848818, overlap 1848815 1848818 CGGTCTGCAAAAAAA TAGAAGCCATTACTTCCGTG TAAC CACGGAAGTAATGGCT-CTT CAATTCCACTTTTAT TERM 2064 1848853 - 1848815 - T 100 -19.9 -4.34482 | gap 1, opp_overlap 1848808 1848816 1848818, overlap 1848813 1848818 GTCTGCAAAAAAATA GAAGCCATTACTTCCGTG TAAC CACGGAAGTAATGGCT-C TTCAATTCCACTTTT TERM 2065 1848816 - 1848853 + T 100 -20.1 -3.20361 | opp_overlap 1848815 1848813 1848818, overlap 1848808 1848818 TCTGCAAAAAAATAG AAGCCATTACTTCCGTG TAAC CACGGAAGTAATGGCTC TTCAATTCCACTTTT TERM 2066 1848851 - 1848818 - T 100 -22.7 -4.2757 | opp_overlap 1848816 1848808 1848818, overlap 1848815 1848813 TGCAAAAAAATAGAA GCCATTACTTCCGTG TAAC CACGGAAGTAATGGC TCTTCAATTCCACTT TERM 2067 1848818 - 1848851 + T 100 -22.7 -3.15621 | opp_overlap 1848818 1848815 1848813, overlap 1848816 1848808 TGCAAAAAAATAGAA GCCATTACTTCCGTG TAAC CACGGAAGTAATGGC TCTTCAATTCCACTT Cthe_1524 1849907 - 1848867 - | hypothetical protein TERM 2068 1850193 - 1850165 - R 100 -11.1 -5.11613 | opp_overlap 1850165 ATATCATCCAAAAAA TCAGGCTTGATTC GGT AATTCAAGCCTGA TTTCTTACAACATTA TERM 2069 1850165 - 1850193 + r 95 -10.4 -4.1673 | opp_overlap 1850165 ATATCATCCAAAAAA TCAGGCTTGATT CGGTA ATTCAAGCCTGA TTTCTTACAACATTA Cthe_1525 1852052 - 1850184 - | hypothetical protein Cthe_1526 1852803 - 1852039 - | ABC transporter related protein TERM 2070 1852192 - 1852164 - G 74 -6.1 -4.42386 | overlap 1852166 CCTTCAGGTATAAAA TTCTTTTGCAG TAACTGG CTGCAAAAGCA TCATGGGTAACCATT TERM 2071 1852854 - 1852831 - R 80 -6.1 -4.79352 | opp_overlap 1852831 GGATTCATAATAAAA TTCTCTCCT AAATAA AAGAGAGAA TTTATTCTTCTACTT Cthe_1527 1853962 - 1852931 - | periplasmic sensor signal transduction histidine kinase Cthe_1528 1854633 - 1853959 - | two component transcriptional regulator TERM 2072 1854745 - 1854759 + r 72 -5 -4.80167 | TTGAATAACCTCATT TTTTCG AGC CGAGAA TTTTGGTTTTTAGTG Cthe_1530 1856503 - 1856063 - | transposase, IS204/IS1001/IS1096/IS1165 TERM 2073 1856559 - 1856616 + r 100 -28.5 -2.75997 | gap 1, opp_overlap 1856572 1856581 1856588, overlap 1856559 1856563 1856568 1856574 1856610 ATCATGTTTTTTTGT TTATTTCAACTAACTTTGGAAAGAACCA ATT TGGTTCTTTCCAAAGTTAGTTGAA-TAA CTTCATTTATAAAAA TERM 2074 1856559 - 1856617 + r 100 -22.5 -3.6053 | opp_overlap 1856572 1856581 1856588, overlap 1856559 1856563 1856568 1856574 1856610 ATCATGTTTTTTTGT -TTATTTCAACTAACTTTGGAAAGAACCA ATT TGGTTCTTTCCAAAGTTAGTTGAA-TAAC TTCATTTATAAAAAG TERM 2075 1856563 - 1856613 + r 100 -31.8 -2.64878 | opp_overlap 1856572 1856581 1856588, overlap 1856559 1856559 1856568 1856574 1856610 TGTTTTTTTGTTTAT TTCAACTAACTTTGGAAAGAACCA ATT TGGTTCTTTCCAAAGTTAGTTGAA TAACTTCATTTATAA TERM 2076 1856568 - 1856608 + r 100 -25.9 -3.10677 | opp_overlap 1856572 1856581 1856588, overlap 1856563 1856559 1856559 1856574 TTTTGTTTATTTCAA CTAACTTTGGAAAGAACCA ATT TGGTTCTTTCCAAAGTTAG TTGAATAACTTCATT TERM 2077 1856604 - 1856572 - R 100 -20.9 -3.35813 | opp_overlap 1856568 1856563 1856559 1856559 1856574, overlap 1856581 1856588 GTTTATTTCAACTAA CTTTGGAAAGAACCA ATT TGGTTCTTTCCAAAG TTAGTTGAATAACTT TERM 2078 1856595 - 1856581 - R 77 -8.6 -3.58305 | opp_overlap 1856574 1856568 1856563 1856559 1856559, overlap 1856572 1856588 AACTAACTTTGGAAA GAACCA ATT TGGTTC TTTCCAAAGTTAGTT TERM 2079 1856678 - 1856632 - R 93 -8.8 -4.87665 | opp_overlap 1856637 1856667, overlap 1856637 CTTCATTTATAAAAA GATAAGAGACGCAAACCCTTAA ATT TCAAGGTTTAGCGTCTCTTTTA CGCTCTATAACTGTC TERM 2080 1856637 - 1856673 + r 100 -10.9 -4.18401 | opp_overlap 1856632 1856637, overlap 1856667 TTTATAAAAAGATAA GAGACGCAAACCCTTAA ATT TCAAGGTTTAGCGTCTC TTTTACGCTCTATAA TERM 2081 1856673 - 1856637 - R 100 -13.1 -4.13816 | opp_overlap 1856637 1856667, overlap 1856632 TTTATAAAAAGATAA GAGACGCAAACCCTTAA ATT TCAAGGTTTAGCGTCTC TTTTACGCTCTATAA Cthe_1531 1857412 - 1856924 - | hypothetical protein Cthe_1532 1857915 - 1857529 - | flagellin-like protein TERM 2082 1858334 - 1858346 + Gr 74 -7.7 -3.90586 | opp_overlap 1858333 1858334 GAGTGGCAGAAAAGG CCTCT GGG AGAGG TTTATCCGATAGTAT TERM 2083 1858640 - 1858626 - gR 71 -8.6 -2.92789 | ATACTGAATATCAGA GGTGTA TAG TACACC AGATAAGAAACACGC Cthe_1533 1857845 - 1859068 + | transposase, mutator type TERM 2084 1859115 - 1859074 - TR 73 -8.2 -3.49777 | opp_overlap 1859069 1859075 1859076, overlap 1859078 GCGTATATAGTATAA TCA-AGGGGTTCAGGGAAAC TCTG GTTTCC-TGAACCCCCCTGT AATATTTTATACGCA TERM 2085 1859075 - 1859114 + Tr 83 -10.8 -2.98387 | gap 1, opp_overlap 1859074 1859078, overlap 1859069 1859076 CGTATATAGTATAAT CA-AGGGGTTCAGGGAAAC TCT GGTTTCCTGAACCCCCCTG TAATATTTTATACGC TERM 2086 1859076 - 1859112 + Tr 81 -10.1 -3.03972 | opp_overlap 1859074 1859078, overlap 1859075 1859069 GTATATAGTATAATC AAGGGGTTCAGGGAAAC TCT GGTTTCCTGAACCCCCC TGTAATATTTTATAC TERM 2087 1859110 - 1859078 - TR 100 -15.8 -3.49182 | gap 1, opp_overlap 1859076 1859075 1859069, overlap 1859074 ATATAGTATAATCAA GGGGTTCAGGGAAAC TCTG GTTTCC-TGAACCCC CCTGTAATATTTTAT TERM 2088 1859159 - 1859178 + Tr 83 -8 -4.26188 | opp_overlap 1859162, overlap 1859148 ATTTTTCTTTTGTAA GAATTTCT TATC AGAAATTC TTTTGAATCTATAAA Cthe_1534 1861180 - 1859543 - | hypothetical protein TERM 2089 1859739 - 1859768 + g 74 -5 -4.78266 | TTTGCATTTCCCATT TCCAGACCGGAT TTTATC ATTTGGGCTGGA TTTATTATTTTATTT TERM 2090 1860757 - 1860737 - G 72 -8.3 -3.59979 | CTGTGGTATCTTAAA GCCACCTAT ATC ATAGGTTGC AAACTTTACTTTCTC Cthe_1535 1862420 - 1861656 - | hypothetical protein TERM 2091 1861870 - 1861850 - G 73 -6.9 -4.18421 | opp_overlap 1861864, overlap 1861851 TAACCATACAAACAA CCACAACAG CAC CTGTTATGA GCAAGCCTCCATAAC TERM 2092 1862356 - 1862342 - G 81 -5.8 -5.1286 | opp_overlap 1862341 CAAAAATTATAAAAA TCATTA GCA TAATGA ATAGTTTATAGGTTT Cthe_1536 1863334 - 1862417 - | ABC transporter related protein TERM 2093 1863093 - 1863077 - G 85 -8.7 -4.431 | overlap 1863078 CATGTATCCATAAAA CTCCGGA ACA TCCGGAA GAAACCCTATGTGGC TERM 2094 1863092 - 1863078 - G 75 -10 -3.25378 | overlap 1863077 ATGTATCCATAAAAC TCCGGA ACA TCCGGA AGAAACCCTATGTGG Cthe_1537 1863541 - 1863335 - | hypothetical protein Cthe_1538 1864706 - 1863582 - | XRE family transcriptional regulator TERM 2095 1863661 - 1863709 + g 76 -3.1 -5.27399 | opp_overlap 1863666, overlap 1863662 1863666 TCATCAGCCAATATT GTAAACGCAGGATTATTGATGAC TCC GTCAGCCATGCTCTTGCGTATAA TTTTTTCATCTCTTG TERM 2096 1864127 - 1864144 + g 100 -4.9 -6.22691 | opp_overlap 1864127 AGGCCGAAGCAAGAA TCGTTTC ACTG GAAATGA TTTTTTTTCTTGTTC TERM 2097 1864883 - 1864829 - R 100 -16.2 -3.21218 | opp_overlap 1864840, overlap 1864839 1864840 ACCTTTCAGTATTAA TATAAAAAAAGCCACCCCAAAAATCT TAC AAATTTTTGAGGTGGTTTTCTCTATA TTGTGTGCGGAACAA TERM 2098 1864873 - 1864839 - R 100 -11.6 -5.82172 | opp_overlap 1864840, overlap 1864829 1864840 ATTAATATAAAAAAA GCCACCCCAAAAATCT TAC AAATTTTTGAGGTGGT TTTCTCTATATTGTG TERM 2099 1864840 - 1864872 + r 95 -10.7 -4.69028 | opp_overlap 1864840 1864839 1864829 TTAATATAAAAAAAG CCACCCCAAAAATCT TAC AAATTTTTGAGGTGG TTTTCTCTATATTGT TERM 2100 1864872 - 1864840 - R 100 -15.1 -4.06863 | opp_overlap 1864840, overlap 1864839 1864829 TTAATATAAAAAAAG CCACCCCAAAAATCT TAC AAATTTTTGAGGTGG TTTTCTCTATATTGT TERM 2101 1864892 - 1864910 + r 70 -7.4 -3.67141 | CTCTATATTGTGTGC GGAACAAG GTA CCTGTTCC TTTGCCTCAAGTTCT Cthe_1539 1867033 - 1864928 - | L-glutamine synthetase TERM 2102 1866221 - 1866235 + g 71 -6.4 -4.19735 | opp_overlap 1866194 CTCGTGCTGCGCGGG CGCAAC CTC GTTGTG TTTGGTTTTGGCGGA TERM 2103 1866853 - 1866821 - G 70 -9.9 -2.71681 | opp_overlap 1866831, overlap 1866831 CAACGGTTGGAACCA GTGGGTAAAATGGGT TGC ACCCATTTCAACCGC CCAATCCTTCATCAC TERM 2104 1866843 - 1866831 - G 75 -7.7 -4.10429 | opp_overlap 1866831, overlap 1866821 AACCAGTGGGTAAAA TGGGT TGC ACCCA TTTCAACCGCCCAAT TERM 2105 1867136 - 1867162 + r 100 -10.9 -4.68511 | opp_overlap 1867136 CGAATACGCAAAAAA GGCGTTCCACA GTCAA TGTGAAACGCC TTTGTTTCTGTTAAA TERM 2106 1867162 - 1867136 - R 100 -13.1 -5.1615 | opp_overlap 1867136 CGAATACGCAAAAAA GGCGTTCCACA GTCAA TGTGAAACGCC TTTGTTTCTGTTAAA TERM 2107 1867351 - 1867333 - R 70 -6.2 -4.28254 | opp_overlap 1867332 1867347 TTGCAAGATGTAAAA TTAAAAAT TTC ATTTTTAA ATTAAATTCAATAAC Cthe_1540 1868959 - 1867544 - | aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B TERM 2108 1868291 - 1868303 + g 71 -6.2 -4.18494 | CTGCCTTTCCGCCTC GGCC ATGAC GGCC TTTTGAATGAAACTC Cthe_1541 1870416 - 1868956 - | aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit A TERM 2109 1870359 - 1870375 + g 73 -10.1 -2.7641 | overlap 1870358 1870374 CTTTTGTCAGCTCCA CCGCGGA AAT TTCGCGG CTTTGAAGCCTTTTT TERM 2110 1870374 - 1870385 + g 73 -5.8 -4.62471 | overlap 1870359 1870358 CCGCGGAAATTTCGC GGCT TTGA AGCC TTTTTGCCAGTTCAG Cthe_1542 1870706 - 1870413 - | aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C TERM 2111 1870451 - 1870471 + g 78 -3.9 -5.26875 | overlap 1870452 CGAAAAATCCGTTAT ACCCTTCCA CAT TGGAAAGGA TTTTTTCATTGGGAA TERM 2112 1870658 - 1870677 + g 70 -5.8 -4.43501 | gap 1, opp_overlap 1870630, overlap 1870631 1870660 1870661 CATCCGAGAAGCTCA GCTTTGCAA GTT TTGCAA-GC TTTTCTACCTCAGTT Cthe_1543 1872514 - 1870769 - | aspartyl-tRNA synthetase TERM 2113 1872579 - 1872617 + r 90 -11.1 -3.7941 | gap 1, opp_overlap 1872580, overlap 1872580 CCGAAAATATAAAAA AGCTGCTCGCCC-GAAAT AGAA ATTTCAGGGCGAACAGCA TTATTGTCCGCGGTA TERM 2114 1872616 - 1872580 - R 100 -16.8 -5.63645 | gap 1, opp_overlap 1872580 1872579 CGAAAATATAAAAAA GCTGCTCGCCC-GAAAT AGAA ATTTCAGGGCGAACAGC ATTATTGTCCGCGGT TERM 2115 1872580 - 1872616 + r 100 -14.6 -2.87325 | gap 1, opp_overlap 1872580, overlap 1872579 CGAAAATATAAAAAA GCTGCTCGCCC-GAAAT AGAA ATTTCAGGGCGAACAGC ATTATTGTCCGCGGT TERM 2116 1872714 - 1872730 + r 75 -8.1 -3.66356 | ACGTCGCACCTACTC GTCATAT CCC ATATGAC TTTCAGATTGAAGCT Cthe_1544 1873115 - 1872915 - | hypothetical protein TERM 2117 1873011 - 1872993 - G 76 -3.1 -5.28831 | ATCAATAAAATAAAA CACATGG TATTT CCATTTG TCCGGATTATAAATG TERM 2118 1873726 - 1873716 - R 70 -8.2 -2.98881 | opp_overlap 1873713 ACAGGAAACATCATA GCCC TTC GGGC AAATTCACTGTTATC TERM 2119 1873988 - 1873967 - R 71 -8 -3.2044 | overlap 1873959 1873966 AACATAAGGCAAAAT CGCCCATG TAACAT CATGAGCG GAAATATTTCTGCGT Cthe_1545 1874188 - 1873943 - | hypothetical protein TERM 2120 1874154 - 1874136 - G 72 -8.8 -3.57783 | overlap 1874151 1874152 CGACGACAATGACAA CCGGTAGT ATC ACAACCGG TGCATCGCATATCCC Cthe_1546 1875737 - 1874604 - | 4Fe-4S ferredoxin, iron-sulfur binding TERM 2121 1875451 - 1875462 + g 76 -2.2 -5.46698 | CATGCACACTCCAAA TGCT CAAG GGCA TTTTTTCGTTTTCCG Cthe_1547 1876122 - 1876556 + | hypothetical protein Cthe_1548 1877375 - 1876629 - | enoyl-CoA hydratase/isomerase TERM 2122 1877087 - 1877050 - G 70 -9.9 -2.73676 | opp_overlap 1877050, overlap 1877047 GCCAAATCAAATCCA CCACCCATTGCCGCT CCGTTTAT AGCGGCAATCGTTGG TTTTGAAAATTTCCA TERM 2123 1877050 - 1877087 + g 89 -9.9 -4.17089 | opp_overlap 1877047 1877050 GCCAAATCAAATCCA CCACCCATTGCCGCT CCGTTTAT AGCGGCAATCGTTGG TTTTGAAAATTTCCA Cthe_1549 1878255 - 1877584 - | methyltransferase type 12 TERM 2124 1879156 - 1879132 - g 75 -10.1 -3.10098 | opp_overlap 1879136, overlap 1879129 1879136 AGGAGCTTAAAACTA CCAATATCCCC GAC GAGGATATTGA ATGTCTGCGAAGCCT TERM 2125 1879545 - 1879526 - g 71 -5 -4.64334 | AACCTTGGAAGAAAA CCTTGAGA AAGT CCTCAAAG CCATTCGTTCATTGA Cthe_1550 1878759 - 1880048 + | transposase IS116/IS110/IS902 Cthe_1552 1881914 - 1881522 - | MAEBL, putative Cthe_1553 1882736 - 1882164 - | hypothetical protein TERM 2126 1883092 - 1883054 - R 77 -4.1 -5.51046 | TAAATACACAAAAAA GAAAGGATATATTGT TATATACAC ATAATACATCCTTTC CTTCGCTTTTACTTC Cthe_1554 1883794 - 1883267 - | methylated-DNA--protein-cysteine methyltransferase TERM 2127 1883436 - 1883465 + g 78 -4.1 -5.28683 | opp_overlap 1883436 ACAGCTCTGCCAACA GCACGGGATGACA TTTT TGCCGTACCGCGC TTTTTTGCTATTACT Cthe_1555 1884985 - 1884101 - | NLPA lipoprotein Cthe_1556 1885717 - 1885007 - | binding-protein-dependent transport systems inner membrane component Cthe_1557 1886578 - 1885757 - | ABC transporter related protein TERM 2128 1886302 - 1886312 + g 85 -6.8 -5.03145 | TCTTTTTTCTCTCTT GCAG CAG CTGC TTTTTTGAAAGGTTG TERM 2129 1886775 - 1886747 - R 100 -12.5 -4.60797 | GGCGCATACATAAAA GCAGCCGGGAT AACTCCA ATCCCGACTGC GGAAAGCACAGAAGG TERM 2130 1886983 - 1887023 + r 77 -9.1 -3.19835 | opp_overlap 1886985 1886986, overlap 1886982 1886984 AAAAAGTCAATAATA AATTTGGCCAATTCACAAA TTT TTGGTGAATTGGCCAAGAA ATTTATCTTATTAAA TERM 2131 1886984 - 1887022 + r 89 -12.6 -2.51178 | opp_overlap 1886985 1886986, overlap 1886983 1886982 AAAAGTCAATAATAA ATTTGGCCAATTCACAAA TTT TTGGTGAATTGGCCAAGA AATTTATCTTATTAA TERM 2132 1887021 - 1886985 - R 100 -13.9 -4.49364 | opp_overlap 1886984 1886983 1886982, overlap 1886986 AAAGTCAATAATAAA TTTGGCCAATTCACAAA TTT TTGGTGAATTGGCCAAG AAATTTATCTTATTA TERM 2133 1887020 - 1886986 - R 100 -17.4 -3.27992 | opp_overlap 1886984 1886983 1886982, overlap 1886985 AAGTCAATAATAAAT TTGGCCAATTCACAAA TTT TTGGTGAATTGGCCAA GAAATTTATCTTATT Cthe_1558 1887489 - 1887034 - | BadM/Rrf2 family transcriptional regulator TERM 2134 1887160 - 1887150 - G 74 -4.6 -4.98616 | opp_overlap 1887155, overlap 1887141 CCAAAACATCAAAAA CCGA TGA CCGG AGGGCTTGTTCAATA TERM 2135 1887763 - 1887747 - H 77 -4.5 -5.17576 | overlap 1887748 TATCAATGGAAAAAA CTTTTCT GGA AGAAAAA AACAGGCGAAGCATC TERM 2136 1888011 - 1887984 - g 72 -9.8 -3.0806 | overlap 1887975 1887976 CTCAAATTGGGAATA TTCCCGAACGGG AAAT CCCACTCGGGCA GCTTTGGAGGCTTTG TERM 2137 1888738 - 1888728 - g 76 -4.6 -5.14477 | opp_overlap 1888728 GAGACAGGCAAAAAA CGGC GGA GCCA TGATTTCCTTTGAGT Cthe_1559 1887838 - 1889001 + | cystathionine gamma-lyase TERM 2138 1889245 - 1889265 + G 75 -9.8 -3.44051 | overlap 1889249 TTGCTTTTGCCGCCC TTAACCGG GGTTA CCGGTTAA TTATGGTGGTACCAA Cthe_1560 1888998 - 1889906 + | cystathionine beta-synthase (acetylserine-dependent) Cthe_1561 1889915 - 1890352 + | hypothetical protein TERM 2139 1890707 - 1890718 + GF 78 -5.8 -4.74103 | GATTGTGGGATTTGA TCCG GCTA CGGA TTTTTCAATTCAACC TERM 2140 1891069 - 1891057 - gf 81 -5.5 -5.09204 | overlap 1891058 ATATCCGAAGAAAAA CGGAC GGT GTCCA AATTGTCAGGACACA Cthe_1562 1890324 - 1891535 + | hypothetical protein Cthe_1563 1891537 - 1892208 + | ABC transporter related protein Cthe_1564 1892313 - 1892852 + | GCN5-related N-acetyltransferase TERM 2141 1893550 - 1893531 - gf 73 -7.8 -3.75571 | overlap 1893529 GAACGGATTAAAATA TGCCAGCG AGGC CGCTGCCA CCGTCCAGGCTTGCT Cthe_1565 1892797 - 1894272 + | nitrogenase TERM 2142 1894380 - 1894400 + G 72 -3.2 -5.02074 | overlap 1894373 1894382 CATTCCGGTCCCGGC TGCGGCGA GATGA TTGCCGGA TTTTTTGAACGGTCA Cthe_1566 1894269 - 1895612 + | nitrogenase Cthe_1567 1895626 - 1895961 + | dinitrogenase iron-molybdenum cofactor biosynthesis Cthe_1568 1895974 - 1896849 + | radical SAM family protein TERM 2143 1898352 - 1898333 - g 75 -2.8 -5.31275 | opp_overlap 1898333 CCTGATGAGAAAAAA TTTGCCGA TATT CCGGAAAA CTTAATTCGCATATC Cthe_1569 1897121 - 1898437 + | O-acetylhomoserine aminocarboxypropyltransferase TERM 2144 1898981 - 1898971 - g 81 -6.8 -4.82901 | GTGGCTGGAGAAAAA CGGA ATT TCCG CAAAGCAGGAGGACG TERM 2145 1899123 - 1899111 - g 72 -3.3 -5.14563 | opp_overlap 1899111 1899118, overlap 1899118 CTGTTCAGGAAAAAA CGGGA AAT TACCG TGTAATTCTTGATAT Cthe_1570 1898462 - 1899523 + | extracellular solute-binding protein TERM 2146 1899578 - 1899534 - f 77 -8.7 -3.61774 | overlap 1899536 TATAATATTTCCAAA GATTGTTTCCGCCCGGT GAACCGGAGGA ACCGGGCGGAAATAATA AACACCCCACAGGAG TERM 2147 1899576 - 1899536 - f 90 -11.3 -3.38201 | overlap 1899534 TAATATTTCCAAAGA TTGTTTCCGCCCGGT GAACCGGAGGA ACCGGGCGGAAATAA TAAACACCCCACAGG Cthe_1571 1899604 - 1900671 + | binding-protein-dependent transport systems inner membrane component Cthe_1572 1900668 - 1901471 + | ABC transporter related protein Cthe_1573 1901492 - 1902346 + | nitrogenase iron protein subunit NifH TERM 2148 1902352 - 1902376 + T 100 -14.3 -3.90291 | TCGAATTTGATTGGA GCGGTCGGCAG TTT CTGTTGACCGC TTTACTTAGCGAAAT TERM 2149 1902416 - 1902442 + T 72 -3.5 -5.3167 | overlap 1902411 1902406 TGAAATGAACAAAAA GCGATGGGGGC TCGAT GCCCTCGGAGC TTTTGTTTATTTTTA TERM 2150 1902677 - 1902657 - T 100 -11.8 -5.2853 | GAGCCAAAAACAAAA GCCACCGG GACAT CCGGCGGC AAAATAAGAATGAAT Cthe_1574 1903441 - 1902698 - | hypothetical protein TERM 2151 1904008 - 1903990 - H 73 -7.5 -3.61398 | overlap 1904002 TTCTTTTGCCAATAA TTTCCTC AGAAG GAGGAAA ATGATCCCCAGGTGC TERM 2152 1904036 - 1904062 + H 85 -10.8 -3.20367 | opp_overlap 1904035 1904030, overlap 1904030 1904026 TGCACGATACCGAAT TGGCACCGGCCG CTG CGGTTGATGCCA TTCGTGAACTTATTC TERM 2153 1904132 - 1904118 - g 83 -6.4 -5.07053 | overlap 1904121 1904126 AAGGAGGTGAAAAAA TGAGCA GAG TGCCCA CTGCGCACAACGCAG deoD 1904117 - 1904827 + | purine nucleoside phosphorylase Cthe_1576 1904910 - 1905977 + | basic membrane lipoprotein TERM 2154 1906377 - 1906434 + G 91 -13.1 -3.21934 | gap 3, opp_overlap 1906373 1906376, overlap 1906377 ATTTTCTACAAGCAT GTTCCA--AGCGTAACCAACT-TCCCGG TATAT CTGGGACAGTTGGATACGCTGCTGGAAC CTTTTATGCAAGACG TERM 2155 1906377 - 1906435 + G 78 -7.1 -4.37092 | gap 4, opp_overlap 1906373 1906376, overlap 1906377 ATTTTCTACAAGCAT -GTTCCA--AGCGTAACCAACT-TCCCGG TATAT CTGGGACAGTTGGATACGCTGCTGGAACC TTTTATGCAAGACGT TERM 2156 1907061 - 1907049 - g 75 -10.5 -2.93708 | opp_overlap 1907048 1907048, overlap 1907048 1907046 CTGCTGGAAAAAGAG GGCCG TCC CGGCC GCTTTGGCCACGATG TERM 2157 1907260 - 1907287 + G 70 -7.8 -3.68908 | opp_overlap 1907213 1907260 AGGAACCCGACGAAA TGATTGATCACC TCAT GGTTGTCAATCA TTTCCATAAATATTT Cthe_1577 1906032 - 1907576 + | hypothetical protein TERM 2158 1907756 - 1907708 - g 83 -9.6 -3.82865 | gap 1, opp_overlap 1907712, overlap 1907702 1907712 GAAACAAGATGCAAA TGTATGCAC-TGTGGGGCATGTG TCAA CTCATGCCCCACAGGGGCATTAA GCTTCGAAGATGAAA TERM 2159 1907752 - 1907712 - g 95 -14.8 -2.67958 | gap 1, opp_overlap 1907712, overlap 1907702 1907708 CAAGATGCAAATGTA TGCAC-TGTGGGGCATGTG TCAA CTCATGCCCCACAGGGGCA TTAAGCTTCGAAGAT Cthe_1578 1907579 - 1908421 + | radical SAM family protein TERM 2160 1909326 - 1909289 - gf 70 -8.3 -3.01416 | opp_overlap 1909292, overlap 1909292 CATTATTGACATACA GGACCTGCACGCCAGGG ATTA CCGCGGCGTGGAAGTGC TTAAGGGTTTAAGCC Cthe_1579 1908483 - 1910045 + | ABC transporter related protein TERM 2161 1910411 - 1910434 + GF 77 -10.2 -2.64107 | overlap 1910400 ACGTGCTGCTATGTA TGCTGGCCGC TGTT GCCGCCGGCA TGCTGTGGAGCTTTC Cthe_1580 1910020 - 1911138 + | inner-membrane translocator Cthe_1581 1911139 - 1912074 + | inner-membrane translocator TERM 2162 1912086 - 1912120 + F 90 -11.5 -3.49633 | gap 1, overlap 1912086 GTAAATGGGGCAGTC GGTATTCCGCCGTGCG CTTC TGC-CGGCGGAGTATC CTTTTTCCCTTTGTA TERM 2163 1912086 - 1912121 + F 93 -9.1 -4.85433 | overlap 1912086 GTAAATGGGGCAGTC GG-TATTCCGCCGTGCG CTTC TGC-CGGCGGAGTATCC TTTTTCCCTTTGTAT Cthe_1582 1912156 - 1912572 + | cytidine deaminase Cthe_1583 1912629 - 1913297 + | deoxyribose-phosphate aldolase TERM 2164 1913505 - 1913471 - T 86 -11.5 -2.63902 | opp_overlap 1913477, overlap 1913468 1913467 ATAACAAGGAACCGA TTAGGAGGTAGCTGA TTATT TCAGCTACCTCCTGT AAAAAAGTGACTGCC TERM 2165 1913477 - 1913499 + T 87 -12.1 -2.62396 | opp_overlap 1913471 1913468 1913467 AGGAACCGATTAGGA GGTAGCTGA TTATT TCAGCTACC TCCTGTAAAAAAGTG Cthe_1584 1914302 - 1913523 - | two component AraC family transcriptional regulator Cthe_1585 1916019 - 1914295 - | signal transduction histidine kinase, LytS TERM 2166 1916117 - 1916066 - R 100 -18.7 -3.64685 | gap 1, opp_overlap 1916072 1916075 1916078, overlap 1916072 1916075 1916078 1916103 AAAATGTCCCAATAA TG-CAAATAACAATATATTATAGC TTTCC GCTATAATATATTGTTATTTGACA ATAGCCGTTTAACTA TERM 2167 1916110 - 1916072 - R 100 -16.5 -3.85389 | opp_overlap 1916072 1916075 1916078, overlap 1916066 1916075 1916078 1916103 TCCCAATAATGCAAA TAACAATATATTATAGC TTTCC GCTATAATATATTGTTA TTTGACAATAGCCGT TERM 2168 1916072 - 1916110 + r 100 -16.5 -3.57263 | opp_overlap 1916066 1916072 1916075 1916078 1916103, overlap 1916075 1916078 TCCCAATAATGCAAA TAACAATATATTATAGC TTTCC GCTATAATATATTGTTA TTTGACAATAGCCGT TERM 2169 1916075 - 1916107 + r 100 -13.8 -3.92542 | opp_overlap 1916072 1916066 1916075 1916078 1916103, overlap 1916072 1916078 CAATAATGCAAATAA CAATATATTATAGC TTTCC GCTATAATATATTG TTATTTGACAATAGC TERM 2170 1916107 - 1916075 - R 100 -13.8 -4.04773 | opp_overlap 1916075 1916072 1916078, overlap 1916072 1916066 1916078 1916103 CAATAATGCAAATAA CAATATATTATAGC TTTCC GCTATAATATATTG TTATTTGACAATAGC TERM 2171 1916104 - 1916078 - R 86 -9.7 -4.1235 | opp_overlap 1916075 1916072 1916078, overlap 1916075 1916072 1916066 1916103 TAATGCAAATAACAA TATATTATAGC TTTCC GCTATAATATA TTGTTATTTGACAAT TERM 2172 1916078 - 1916104 + r 86 -9.7 -4.08958 | opp_overlap 1916078 1916075 1916072 1916066 1916103, overlap 1916075 1916072 TAATGCAAATAACAA TATATTATAGC TTTCC GCTATAATATA TTGTTATTTGACAAT Cthe_1586 1917785 - 1916130 - | binding-protein-dependent transport systems inner membrane component TERM 2173 1917753 - 1917727 - G 93 -10.2 -4.84246 | AAAATAAGAAACAAA GCTAGTATTGCC AAT GCCAATACCAGC CATATGTTCAATTTC Cthe_1587 1918885 - 1917782 - | ABC transporter related protein TERM 2174 1918470 - 1918482 + g 80 -7.7 -4.386 | GCAATACGCTGTTGT TGTCC ACC GGACA TTTTGTGCGGCATTC Cthe_1588 1920129 - 1919023 - | extracellular solute-binding protein Cthe_1589 1920437 - 1920799 + | transcriptional regulator TERM 2175 1921689 - 1921670 - g 85 -8.6 -4.42062 | GATTTTTCAAAGAAA GCCAATGG GTTA CCATTAGC AATAGGTTTTGCAAA TERM 2176 1921727 - 1921708 - g 72 -3.6 -5.00884 | AGGTTTTGCAAAAAA TAATACTG AAAA CAGAATTA AGCATATACTCTGTT TERM 2177 1921918 - 1921905 - g 82 -3.7 -5.4251 | overlap 1921906 GTGATACAGAAAAAA CCCCG GCAT CTGGG AAAGAATCAGCATCA Cthe_1590 1920800 - 1923064 + | peptidase M56, BlaR1 Cthe_1591 1924100 - 1923687 - | hypothetical protein TERM 2178 1923959 - 1923970 + g 70 -5.8 -4.34402 | CAAAAATATCTTTTT CGGT ACGC ACCG TTTTAATCTCACAAA TERM 2179 1924769 - 1924749 - g 79 -3.4 -5.37593 | gap 1 GGTGAAAGTAAAAAA TCCATA-CT TTGA AGATATGGA AGCATTCTATGGGCT Cthe_1592 1924546 - 1925721 + | glycerate kinase Cthe_1593 1926309 - 1925740 - | NUDIX hydrolase Cthe_1594 1926738 - 1926421 - | hypothetical protein TERM 2180 1926663 - 1926682 + g 73 -2.2 -5.35354 | opp_overlap 1926661 TTTCCATATCAAATT TATAATGT ATAA ACATTCTA TTTTTTCCTTCTGTA Cthe_1595 1927945 - 1927328 - | hypothetical protein Cthe_1596 1928159 - 1928632 + | MarR family transcriptional regulator Cthe_1597 1928632 - 1929075 + | flavodoxin Cthe_1598 1929072 - 1929746 + | nitroreductase TERM 2181 1929900 - 1929935 + T 77 -8.3 -3.80697 | opp_overlap 1929902 TTAACTGCATTTATA GACCTTACAGGTCGG ATAAAA CCATCTTGTAAGGTC TTATGTTAATTTGCT Cthe_1599 1931931 - 1930261 - | PAS/PAC sensor signal transduction histidine kinase Cthe_1600 1932602 - 1931928 - | two component transcriptional regulator Cthe_1601 1933249 - 1932599 - | phosphate uptake regulator, PhoU Cthe_1602 1933998 - 1933249 - | phosphate ABC transporter, ATPase subunit TERM 2182 1933561 - 1933576 + g 72 -3.2 -5.0133 | CTGCTGGCCGCCAGA GAGTTC CAAA GCACTC TTTTTTAAGCGGCTC TERM 2183 1934092 - 1934121 + r 74 -6.5 -4.53602 | opp_overlap 1934090, overlap 1934090 ATTATTACCAAATGC CTTTCAAATGGCT TTTT AGACTTTTGAAAG TTTCTTTGATATAAA Cthe_1603 1934982 - 1934107 - | phosphate ABC transporter, inner membrane subunit PstA Cthe_1604 1935836 - 1934982 - | phosphate ABC transporter, inner membrane subunit PstC Cthe_1605 1936760 - 1935906 - | phosphate ABC transporter (binding protein)-like protein TERM 2184 1936553 - 1936573 + g 81 -7.5 -4.58076 | overlap 1936546 CAGAGGTACTGTTTA CAACGGTTG CTT CGTCCGTTG TTTTATCTACCTTAT TERM 2185 1936926 - 1936890 - R 100 -16.7 -4.8048 | opp_overlap 1936890 1936889 1936886 TTCTCAGATTAAAAA GCCGCCAATTAAGAAGG TTT CCTCCTCAACTGACGGC ATTCTTTTTACAATT Cthe_1608 1938931 - 1938476 - | recombinase Cthe_1609 1940499 - 1938931 - | recombinase TERM 2186 1939173 - 1939183 + g 81 -5.4 -5.09685 | opp_overlap 1939163, overlap 1939166 ATAAAGCCGCTTCTT TGAG CAG CTCA TTTTTCTGTGTATTA Cthe_1610 1940779 - 1940561 - | hypothetical protein TERM 2187 1940808 - 1940829 + r 100 -12.3 -4.14257 | opp_overlap 1940805 1940804 1940808 TCCTATAAAAACTTA GGACAGCCG CGAT TGGCTGTCC TTTATCGTTATTCCG TERM 2188 1940829 - 1940808 - R 86 -11.6 -2.88667 | opp_overlap 1940808, overlap 1940805 1940804 TCCTATAAAAACTTA GGACAGCC GCGATT GGCTGTCC TTTATCGTTATTCCG Cthe_1611 1941841 - 1940837 - | peptidoglycan-binding LysM Cthe_1612 1942257 - 1941838 - | toxin secretion/phage lysis holin TERM 2189 1942323 - 1942300 - R 100 -8.8 -5.36441 | TTTGCATATAAAAAA GCGCCCTGCC TTAA AGCAAAGCGC TGAAAATTAAAACTT Cthe_1613 1944767 - 1942344 - | glycosyl hydrolase-like protein Cthe_1614 1945384 - 1944809 - | hypothetical protein Cthe_1615 1945588 - 1945394 - | hypothetical protein Cthe_1616 1948121 - 1945599 - | phage minor structural protein Cthe_1617 1948899 - 1948126 - | phage putative tail component TERM 2190 1948819 - 1948835 + g 71 -9.4 -2.87206 | opp_overlap 1948781, overlap 1948818 AAAGGAATTGCGCAG GGCAGG GGAGA CCTGCC ATTTAGTAAGTCTTG Cthe_1618 1951201 - 1948913 - | hypothetical protein TERM 2191 1949052 - 1949032 - G 71 -7.5 -3.84406 | GCTGCACCACAACAA GCGGCCCAG AAG CTAAACCGC TAAATTCACCTCTTC TERM 2192 1950210 - 1950221 + g 71 -7.2 -3.96298 | TCCTCGCTCATCACT GCGC CCAT GCGC TTTGCTTCCTCGGTC TERM 2193 1950706 - 1950681 - G 70 -9 -3.13403 | gap 1, overlap 1950679 GCTGCTGTACCAATA GCGGCCA-GGG CTGCT CCCATGGCCAC ACCGATACCTTTCAA Cthe_1619 1951335 - 1951607 + | AbrB family transcriptional regulator Cthe_1620 1951604 - 1952008 + | hypothetical protein TERM 2194 1952024 - 1952045 + T 77 -4.4 -5.22794 | opp_overlap 1952014 1952012 1952024 AAGCAGCTTTTTAAA GCAGGG ATTACAGCCA CCCTGC TTTTTTGCTGCTTAT Cthe_1621 1952248 - 1952057 - | hypothetical protein TERM 2195 1952253 - 1952221 - G 100 -15 -4.66537 | opp_overlap 1952219 TGCCGTAATATAAAA GCCGAGTGAACAAT TCCTC ATCGCTCACTCGGC CGGTGTGTTTTTTAA Cthe_1622 1952628 - 1952245 - | hypothetical protein Cthe_1623 1953227 - 1952631 - | phi13 family phage major tail protein Cthe_1624 1953577 - 1953233 - | hypothetical protein Cthe_1625 1953984 - 1953574 - | HK97 family phage protein Cthe_1626 1954357 - 1954022 - | phage head-tail adaptor, putative Cthe_1627 1954668 - 1954360 - | uncharacterized phage protein TERM 2196 1954492 - 1954451 - G 71 -9.5 -2.92111 | TCCCCAAAAAAGCCA GCAGTCGAGCCATCCCT GCTTTCAT AAAAATGGCTCGACAGC ATAATGACAGCCTGC Cthe_1628 1955892 - 1954690 - | HK97 family phage major capsid protein TERM 2197 1955615 - 1955627 + g 78 -2.6 -5.37865 | TGCCTGTACTCATCG CTGG CACGT CCGG TTTTTTCATTGTTGC TERM 2198 1955982 - 1955966 - R 95 -8.7 -5.09245 | opp_overlap 1955966, overlap 1955960 GTAAAAGTAGAAAAA GCCGCTT TTC AAGCGAC TCAATTGGTGTTCCT Cthe_1629 1956671 - 1955943 - | peptidase S14, ClpP Cthe_1630 1957932 - 1956610 - | HK97 family phage portal protein TERM 2199 1956777 - 1956787 + gr 71 -8.2 -3.29471 | CTCCGCCCAACTCCG CCGG AAT CCGG TTCATGTCCTCAAGC TERM 2200 1957654 - 1957614 - GR 76 -7.1 -4.30995 | gap 1, overlap 1957611 TTCCCCATAAAAGAA GATGAC-TCATCAGTGTT TCTCGG AACACAAATGAAGTCATC TCAGGGTTTGGTTCG TERM 2201 1957957 - 1957991 + r 82 -5.1 -5.34632 | gap 1, opp_overlap 1957965, overlap 1957965 TCCTAAAAATGGGCA TG-AAAAAAGCACCAC ATTT GTGGAGCTTCTTTACA TTTTTATATTTTATT TERM 2202 1957982 - 1957965 - R 88 -6.9 -5.14965 | opp_overlap 1957957 1957965 ATGGGCATGAAAAAA GCACCAC ATTT GTGGAGC TTCTTTACATTTTTA TERM 2203 1957965 - 1957982 + r 71 -6.9 -4.10717 | opp_overlap 1957965, overlap 1957957 ATGGGCATGAAAAAA GCACCAC ATTT GTGGAGC TTCTTTACATTTTTA Cthe_1631 1959793 - 1958009 - | hypothetical protein TERM 2204 1958475 - 1958491 + g 70 -9.5 -2.61695 | overlap 1958474 1958472 TTTTTTAACTGGGCA CGAATAG TAA CTATTCG ATCTTTGGGAATCGA TERM 2205 1959800 - 1959812 + r 91 -7.7 -5.26875 | AAAATTCAATTACTT CACTC CTC GAGTG TTTTTTAATTAAGGA TERM 2206 1961407 - 1961385 - R 82 -7.6 -4.40358 | opp_overlap 1961391, overlap 1961389 1961391 AGGCAGTTTATAAAA GTAACAGCGG CAT CCGCCGCTTC CTTGTCATATCGAGA TERM 2207 1961403 - 1961389 - R 80 -9.2 -3.75517 | opp_overlap 1961391, overlap 1961385 1961391 AGTTTATAAAAGTAA CAGCGG CAT CCGCCG CTTCCTTGTCATATC TERM 2208 1961404 - 1961391 - R 80 -9.5 -3.45405 | opp_overlap 1961391, overlap 1961389 1961385 TTTATAAAAGTAACA GCGGC ATCC GCCGC TTCCTTGTCATATCG TERM 2209 1961391 - 1961404 + r 80 -9.5 -3.4878 | opp_overlap 1961389 1961385 1961391 TTTATAAAAGTAACA GCGGC ATCC GCCGC TTCCTTGTCATATCG TERM 2210 1961530 - 1961509 - R 100 -9.5 -5.5112 | opp_overlap 1961509 1961518 1961528 TTGAGCAAGAAAAAA GGAACCTCA GGGA TGAAGTTCC TCTCGTTAGTGGATT Cthe_1633 1961767 - 1961573 - | hypothetical protein Cthe_1634 1962238 - 1961771 - | hypothetical protein TERM 2211 1962262 - 1962294 + r 100 -20 -3.05022 | gap 1, opp_overlap 1962265 1962266, overlap 1962265 CCTCCTTGTATTTAC CAAG-GCAGGGGCGG AGAT CCGCCCCTGCGCTTG TCTATCTATGCCGCC TERM 2212 1962290 - 1962265 - R 100 -16.1 -3.18264 | opp_overlap 1962265 1962262, overlap 1962266 CCTTGTATTTACCAA GGCAGGGGCGG AGAT CCGCCCCTGCG CTTGTCTATCTATGC TERM 2213 1962265 - 1962291 + r 100 -15.9 -3.66896 | gap 1, opp_overlap 1962265 1962266, overlap 1962262 CCTTGTATTTACCAA G-GCAGGGGCGG AGAT CCGCCCCTGCGC TTGTCTATCTATGCC TERM 2214 1962289 - 1962266 - R 100 -19.6 -2.50816 | opp_overlap 1962265 1962262, overlap 1962265 CTTGTATTTACCAAG GCAGGGGCGG AGAT CCGCCCCTGC GCTTGTCTATCTATG Cthe_1635 1963199 - 1962300 - | hypothetical protein TERM 2215 1962983 - 1962999 + g 74 -5 -4.82678 | overlap 1962977 1962985 TATATTCCCGGCCAG CCGCCG CAATC CGGCCG TTTTCCTTTTTCTGA Cthe_1636 1963604 - 1963341 - | hypothetical protein Cthe_1637 1964289 - 1963597 - | virulence-related protein Cthe_1638 1965659 - 1964406 - | ParB-like nuclease TERM 2216 1964803 - 1964819 + g 76 -4.4 -5.13473 | TGATAGTCCTTTCTT GACAGT ACCAA GCTGTC TTTTTTCCATATAAT TERM 2217 1964989 - 1964971 - G 95 -8.8 -5.4505 | opp_overlap 1964971 1964968 1964966 GCGCGCAATAAAAAA GCGCCGAA TTC TTCGGTGC TCATATTGTCATTTA TERM 2218 1964971 - 1964989 + g 77 -11 -2.84401 | opp_overlap 1964971, overlap 1964968 1964966 GCGCGCAATAAAAAA GCGCCGAA TTC TTCGGTGC TCATATTGTCATTTA Cthe_1639 1966963 - 1965665 - | DNA methylase N-4/N-6 Cthe_1640 1967671 - 1967120 - | hypothetical protein Cthe_1641 1968151 - 1967792 - | HNH endonuclease TERM 2219 1968207 - 1968181 - R 95 -8.7 -5.252 | opp_overlap 1968181 TACGCGTATAAAAAA GCCCTCACAGG TTCAT CCCATGAAGGC TTATCTATAATTTTT Cthe_1642 1968515 - 1968273 - | hypothetical protein TERM 2220 1968560 - 1968549 - R 100 -7.2 -5.626 | opp_overlap 1968549 TATGGCATAAAAAAA GCCC CGAA GGGC TTATGCGTTTTAATG Cthe_1643 1969657 - 1968659 - | phage-associated protein-like protein Cthe_1644 1970131 - 1969697 - | hypothetical protein TERM 2221 1970312 - 1970277 - R 90 -9.1 -4.7373 | opp_overlap 1970279, overlap 1970279 GTAGGCCATTAAAAA TACCCACTTAGGTAG TTCGTT CTATCTAAGTGGGTT TCCTATTTAACATGC TERM 2222 1970279 - 1970310 + r 100 -13.9 -4.00934 | opp_overlap 1970277 1970279 AGGCCATTAAAAATA CCCACTTAGGTAG TTCGTT CTATCTAAGTGGG TTTCCTATTTAACAT TERM 2223 1970310 - 1970279 - R 100 -11.7 -3.98658 | opp_overlap 1970279, overlap 1970277 AGGCCATTAAAAATA CCCACTTAGGTAG TTCGTT CTATCTAAGTGGG TTTCCTATTTAACAT Cthe_1645 1970801 - 1970346 - | phage-associated protein TERM 2224 1970837 - 1970819 - R 70 -3.9 -5.03314 | CGCACCTCCAAAAAA TCAAGAT AAAAA ACCTTGA TCTTTGAAGCAGTGT Cthe_1646 1971195 - 1970893 - | hypothetical protein TERM 2225 1971028 - 1971038 + g 74 -4.6 -4.8622 | CAGTTTTGTTGTCTT TCCC GAT GGGG TTTTTACTTCAAAAG Cthe_1647 1974051 - 1971496 - | hypothetical protein TERM 2226 1973762 - 1973740 - G 79 -9.9 -3.70149 | gap 1, opp_overlap 1973738 1973735 1973735 CGTATAGGACGGAAA CCGCTCAAGG ATAT CCTTG-GCGG TATCGCTTAATTCCC Cthe_1648 1974473 - 1974048 - | hypothetical protein Cthe_1649 1975286 - 1974489 - | BRO-like protein Cthe_1650 1977213 - 1975291 - | DNA-directed DNA polymerase TERM 2227 1977228 - 1977265 + r 100 -12.1 -3.794 | gap 1, overlap 1977229 TGCGGTTCTCCTTTC CGCCCTATCGGAGATGGA AGT TAC-TCTCCGATAGGGCC TTTGATCACTTAAGC TERM 2228 1977229 - 1977264 + r 100 -15.6 -2.87319 | gap 1, overlap 1977228 GCGGTTCTCCTTTCC GCCCTATCGGAGATGGA AGT TAC-TCTCCGATAGGGC CTTTGATCACTTAAG Cthe_1651 1978023 - 1977271 - | hypothetical protein Cthe_1652 1978561 - 1978145 - | hypothetical protein Cthe_1653 1979909 - 1978551 - | SNF2-related protein TERM 2229 1978579 - 1978598 + g 73 -8.6 -3.62572 | CTTTCACCTCCCTCT GGGGCAAA AGGA TTTGCTCC TTTGCGGTAGTCGTC TERM 2230 1980252 - 1980276 + r 90 -5.7 -5.55698 | opp_overlap 1980254, overlap 1980253 1980254 GGTTTAAAATATAAA AAGTTGGACTT CAG AAGTCCAACAA TTTTTTTAACTTATC TERM 2231 1980253 - 1980275 + r 81 -9.2 -3.91792 | opp_overlap 1980254, overlap 1980252 1980254 GTTTAAAATATAAAA AGTTGGACTT CAG AAGTCCAACA ATTTTTTTAACTTAT TERM 2232 1980254 - 1980274 + r 100 -12.7 -2.93448 | opp_overlap 1980254, overlap 1980253 1980252 TTTAAAATATAAAAA GTTGGACTT CAG AAGTCCAAC AATTTTTTTAACTTA TERM 2233 1980274 - 1980254 - R 100 -12.7 -5.28983 | opp_overlap 1980254 1980253 1980252 TTTAAAATATAAAAA GTTGGACTT CAG AAGTCCAAC AATTTTTTTAACTTA Cthe_1654 1982201 - 1980282 - | hypothetical protein TERM 2234 1981275 - 1981250 - G 80 -6.2 -4.81083 | CGTAAGTACCAAAAA GGAGCTCATT CTTTTT AATTAGCTCC TCAATCTTTTTAATG Cthe_1655 1982360 - 1982566 + | hypothetical protein TERM 2235 1982908 - 1982955 + T 70 -7.1 -3.60234 | gap 1 GTGCACTCTGTTGGA GGATGTCAAGGG-CGAGCGTAA GCGAG TTCATCTTGACCCTTGACATCC TTTGGACATATATCC TERM 2236 1982979 - 1983002 + T 82 -11 -2.53876 | opp_overlap 1982998 TATATCCTTTTGCTT TCCGGTCTGT TATG ACAGACCGGC TGCCTTCCGGTGAGG TERM 2237 1983026 - 1983040 + T 86 -11.4 -2.89 | overlap 1983024 GGTGAGGACGGGGTT TGGGGC GGA GCCCCA TAATTCTATACAACT Cthe_1656 1983882 - 1983046 - | integrase catalytic subunit Cthe_1657 1984198 - 1983905 - | transposase IS3/IS911 TERM 2238 1984447 - 1984482 + G 81 -7.6 -4.59109 | opp_overlap 1984453 1984454 TTAATGCACTTTTTA CAGCAACCTCTGCTAC TTGT GTAACAGGGCTTGTTG TTTTTGACACCTATA Cthe_1658 1984293 - 1985645 + | TrkH family potassium uptake protein Cthe_1659 1985656 - 1986309 + | TrkA-N TERM 2239 1986726 - 1986744 + T 77 -8.8 -3.58365 | ATCCTGTATCCTCAA CCCCCTGT AAA AAAGGGGG TTATCTAATCTGGTA TERM 2240 1987407 - 1987426 + T 72 -5.8 -4.42788 | AAAATCATATTTAAC TTTCTTAG AAAT CTAAGGAA TTTTATAGCCTTAGG Cthe_1660 1988678 - 1987731 - | transposase, IS4 TERM 2241 1988845 - 1988892 + r 70 -7.1 -3.60234 | gap 1 GTGCACTCTGTTGGA GGATGTCAAGGG-CGAGCGTAA GCGAG TTCATCTTGACCCTTGACATCC TTTGGACATATATCC TERM 2242 1988916 - 1988939 + r 82 -11 -2.53876 | opp_overlap 1988935 TATATCCTTTTGCTT TCCGGTCTGT TATG ACAGACCGGC TGCCTTCCGGTGAGG TERM 2243 1988963 - 1988977 + r 86 -11.4 -2.89 | overlap 1988961 GGTGAGGACGGGGTT TGGGGC GGA GCCCCA TAATTCTATACAACT Cthe_1661 1989819 - 1988983 - | integrase catalytic subunit Cthe_1662 1990135 - 1989842 - | transposase IS3/IS911 Cthe_1663 1990819 - 1990391 - | endoribonuclease L-PSP Cthe_1664 1991650 - 1990973 - | MerR family transcriptional regulator Cthe_1665 1992521 - 1991679 - | Hsp33 protein Cthe_1666 1992713 - 1993660 + | transposase, IS4 TERM 2244 1993802 - 1993768 - T 88 -9.3 -4.26351 | opp_overlap 1993768 GATTAATTTAAGAAA CCGCCAACCAAGAGA ATATA TCTCCTGAATGACGG TCTATCATGGAGGTA Cthe_1667 1994544 - 1993828 - | ABC-2 type transporter Cthe_1668 1995250 - 1994546 - | ABC transporter related protein TERM 2245 1995306 - 1995332 + H 77 -8.1 -3.95725 | gap 1 ACTATTTTGATATTT TTTTCTCCC-CC ACAA GGAGGGAGAAGA TTATTCTTGCGAATT Cthe_1669 1995624 - 1996121 + | DNA recombinase, putative Cthe_1670 1996122 - 1996553 + | recombinase Cthe_1671 1996540 - 1998108 + | recombinase TERM 2246 1998122 - 1998158 + T 100 -10.2 -4.96468 | opp_overlap 1998122, overlap 1998125 AAGCCTGAAAACAAA CAAGGCACTCTACG AAATTAGAA CGTAGGGTGCCCTG TTTTATTTGGATTTA TERM 2247 1998158 - 1998122 - T 93 -10.2 -4.66535 | opp_overlap 1998122 1998125 AAGCCTGAAAACAAA CAAGGCACTCTACG AAATTAGAA CGTAGGGTGCCCTG TTTTATTTGGATTTA TERM 2248 1998125 - 1998155 + T 83 -10.5 -3.03286 | opp_overlap 1998122, overlap 1998122 CCTGAAAACAAACAA GGCACTCTACG AAATTAGAA CGTAGGGTGCC CTGTTTTATTTGGAT Cthe_1672 1998786 - 1998190 - | hypothetical protein Cthe_1673 1999178 - 1999471 + | transposase IS3/IS911 Cthe_1674 1999494 - 2000330 + | integrase catalytic subunit TERM 2249 2000350 - 2000336 - f 86 -11.4 -2.89 | overlap 2000333 AGTTGTATAGAATTA TGGGGC TCC GCCCCA AACCCCGTCCTCACC TERM 2250 2000397 - 2000374 - f 82 -11 -2.53876 | opp_overlap 2000364 CCTCACCGGAAGGCA GCCGGTCTGT CATA ACAGACCGGA AAGCAAAAGGATATA TERM 2251 2000468 - 2000421 - f 70 -7.1 -3.60234 | gap 1 GGATATATGTCCAAA GGATGTCAAGGGTCAAGATGAA CTCGC TTACGCTCG-CCCTTGACATCC TCCAACAGAGTGCAC Cthe_1675 2000720 - 2001013 + | transposase IS3/IS911 Cthe_1676 2001036 - 2001872 + | integrase catalytic subunit TERM 2252 2001892 - 2001878 - T 86 -11.4 -2.89 | overlap 2001875 AGTTGTATAGAATTA TGGGGC TCC GCCCCA AACCCCGTCCTCACC TERM 2253 2001939 - 2001916 - T 82 -11 -2.53876 | opp_overlap 2001906 CCTCACCGGAAGGCA GCCGGTCTGT CATA ACAGACCGGA AAGCAAAAGGATATA TERM 2254 2002010 - 2001963 - T 70 -7.1 -3.60234 | gap 1 GGATATATGTCCAAA GGATGTCAAGGGTCAAGATGAA CTCGC TTACGCTCG-CCCTTGACATCC TCCAACAGAGTGCAC Cthe_1677 2003083 - 2002397 - | abortive infection protein TERM 2255 2002916 - 2002906 - G 70 -5.4 -4.3534 | CTGGAACGAGGAAAA GCAA CCA TTGC GTGACAATCATAAGA Cthe_1678 2004093 - 2003458 - | hypothetical protein TERM 2256 2003973 - 2004004 + g 82 -11 -3.60006 | opp_overlap 2003975 2003980 CCGCACCATTGATAT CATCATAGTAGGTG TAAT CGCCTACTATAATG TTTGGACGTGTGATT Cthe_1679 2004883 - 2004152 - | methyltransferase type 11 TERM 2257 2004265 - 2004277 + g 74 -6.2 -4.37092 | CCTCAACAACGTCCA GCCG AAATC CGGC TTTTATAAGCCCCAT TERM 2258 2004601 - 2004632 + g 79 -3.6 -5.48054 | CATATTCCTCCAGTC CGCAAACCCGATAG GTAA TTTTCGAGTCTGCG TTTTTTGCTTTTGCT Cthe_1680 2005760 - 2004915 - | DNA polymerase, beta-like region TERM 2259 2006123 - 2006107 - H 74 -5.8 -4.54727 | CTCCTTAAATTAAAA GGAGTC GGGCT GACCCC CTAACTTTGGACACT Cthe_1682 2007001 - 2007294 + | transposase IS3/IS911 Cthe_1683 2007317 - 2008153 + | integrase catalytic subunit TERM 2260 2008173 - 2008159 - T 86 -11.4 -2.89 | overlap 2008156 AGTTGTATAGAATTA TGGGGC TCC GCCCCA AACCCCGTCCTCACC TERM 2261 2008220 - 2008197 - T 82 -11 -2.53876 | opp_overlap 2008187 CCTCACCGGAAGGCA GCCGGTCTGT CATA ACAGACCGGA AAGCAAAAGGATATA TERM 2262 2008291 - 2008244 - T 70 -7.1 -3.60234 | gap 1 GGATATATGTCCAAA GGATGTCAAGGGTCAAGATGAA CTCGC TTACGCTCG-CCCTTGACATCC TCCAACAGAGTGCAC Cthe_1684 2008961 - 2008356 - | transposase IS3/IS911 Cthe_1685 2010760 - 2009036 - | ABC transporter related protein TERM 2263 2010331 - 2010319 - G 79 -3.5 -5.4433 | ACATATAAATAAAAA TTATT ATT AATAA AATAACATTAAATAA Cthe_1686 2010946 - 2011239 + | transposase IS3/IS911 Cthe_1687 2011262 - 2012098 + | integrase catalytic subunit TERM 2264 2012118 - 2012104 - T 86 -11.4 -2.89 | overlap 2012101 AGTTGTATAGAATTA TGGGGC TCC GCCCCA AACCCCGTCCTCACC TERM 2265 2012165 - 2012142 - T 82 -11 -2.53876 | opp_overlap 2012132 CCTCACCGGAAGGCA GCCGGTCTGT CATA ACAGACCGGA AAGCAAAAGGATATA Cthe_1688 2013310 - 2012330 - | radical SAM family protein TERM 2266 2012524 - 2012505 - G 79 -9.4 -3.74928 | opp_overlap 2012504 2012503 2012491 2012487 2012507 ATAGGAATGCAATAA GATGGAAA TATG TTTCCATC ACTTTGTATCTCTAT Cthe_1689 2014165 - 2013320 - | hypothetical protein Cthe_1690 2015160 - 2014168 - | radical SAM family protein TERM 2267 2015285 - 2015332 + r 70 -7.1 -3.60234 | gap 1 GTGCACTCTGTTGGA GGATGTCAAGGG-CGAGCGTAA GCGAG TTCATCTTGACCCTTGACATCC TTTGGACATATATCC TERM 2268 2015356 - 2015379 + r 82 -11 -2.53876 | opp_overlap 2015375 TATATCCTTTTGCTT TCCGGTCTGT TATG ACAGACCGGC TGCCTTCCGGTGAGG TERM 2269 2015403 - 2015417 + r 86 -11.4 -2.89 | overlap 2015401 GGTGAGGACGGGGTT TGGGGC GGA GCCCCA TAATTCTATACAACT Cthe_1691 2016259 - 2015423 - | integrase catalytic subunit Cthe_1692 2016575 - 2016282 - | transposase IS3/IS911 Cthe_1693 2017234 - 2016683 - | hypothetical protein TERM 2270 2017276 - 2017319 + r 100 -12.8 -2.79272 | opp_overlap 2017276 2017281, overlap 2017263 2017281 TTTTTTAATGAATAT TAAAATGATTAAGTTCTTGT AAAT ACAAGAACTTAACCATTTTC CTATTTTACCAGTAT TERM 2271 2017319 - 2017276 - R 100 -15 -2.54098 | opp_overlap 2017263 2017276 2017281, overlap 2017281 TTTTTTAATGAATAT TAAAATGATTAAGTTCTTGT AAAT ACAAGAACTTAACCATTTTC CTATTTTACCAGTAT TERM 2272 2017314 - 2017281 - R 100 -14.9 -4.46404 | opp_overlap 2017281 2017276, overlap 2017276 TAATGAATATTAAAA TGATTAAGTTCTTGT AAAT ACAAGAACTTAACCA TTTTCCTATTTTACC TERM 2273 2017281 - 2017314 + r 100 -12.7 -4.55826 | opp_overlap 2017276 2017281, overlap 2017276 TAATGAATATTAAAA TGATTAAGTTCTTGT AAAT ACAAGAACTTAACCA TTTTCCTATTTTACC Cthe_1694 2018322 - 2017702 - | hypothetical protein Cthe_1695 2019790 - 2018315 - | radical SAM family protein TERM 2274 2020006 - 2019970 - R 88 -11.7 -2.98282 | opp_overlap 2019975, overlap 2019975 2019977 ATTAAGGATGACATA GAAAAGACCCCATCC TAATACC GGATGAGGACTTTTC ACCACTTAGCTATAA TERM 2275 2020001 - 2019975 - R 74 -5.8 -4.62984 | opp_overlap 2019975, overlap 2019970 2019977 GGATGACATAGAAAA GACCCCATCC TAATACC GGATGAGGAC TTTTCACCACTTAGC Cthe_1696 2020709 - 2020110 - | hypothetical protein Cthe_1697 2020979 - 2020719 - | ArsR family transcriptional regulator Cthe_1698 2021601 - 2021290 - | hypothetical protein TERM 2276 2021619 - 2021656 + r 100 -13.3 -3.49951 | opp_overlap 2021619, overlap 2021625 2021631 CAACCCCTCCAAAAA TATTAATATAAATATAT ATTT ATATATTTATATTAATA TTATATCACACTGTA TERM 2277 2021656 - 2021619 - R 100 -13.3 -4.58283 | opp_overlap 2021619 2021625 2021631 CAACCCCTCCAAAAA TATTAATATAAATATAT ATTT ATATATTTATATTAATA TTATATCACACTGTA Cthe_1700 2023468 - 2022140 - | recombinase Cthe_1701 2024702 - 2023413 - | recombinase TERM 2278 2024246 - 2024256 + gr 74 -4 -5.09521 | CCCTCCACTTTAAGT TATC ACT GATA TTTTTACTTTCTTCC TERM 2279 2024803 - 2024783 - R 88 -6.1 -5.34857 | opp_overlap 2024783 CTAAACAAAAGAAAA GCCGCTACT TTA ATTAACGGC TACTTATTAAATATC Cthe_1702 2025474 - 2024803 - | cell wall hydrolase/autolysin TERM 2280 2024861 - 2024872 + g 72 -4.4 -4.7033 | CTAAGCCTTTGCACC TGCT TTTC AGCA TTTTCTCTTGACTTA TERM 2281 2025544 - 2025516 - R 76 -6.1 -4.63486 | gap 1, overlap 2025517 2025519 ACCCCCTCAATAAAA CGACCCAAGGAA TCTCTT CTCCTTGGGT-G TAAAATATTGTTATG Cthe_1703 2025988 - 2025494 - | HNH endonuclease TERM 2282 2025542 - 2025519 - G 70 -8.9 -3.25538 | overlap 2025516 2025517 CCCTCAATAAAACGA CCCAAGGAA TCTCTT CTCCTTGGG TGTAAAATATTGTTA Cthe_1704 2026382 - 2025972 - | toxin secretion/phage lysis holin TERM 2283 2026128 - 2026100 - G 100 -6.7 -5.68039 | opp_overlap 2026105, overlap 2026103 AAATGTAGAAAAAAA TAACAGCAGTACG AAT CGCACTACCGTTT TTAATCAAATGAACA TERM 2284 2026125 - 2026103 - G 90 -8.4 -4.89054 | opp_overlap 2026105, overlap 2026100 TGTAGAAAAAAATAA CAGCAGTACG AAT CGCACTACCG TTTTTAATCAAATGA TERM 2285 2026346 - 2026332 - G 70 -9.2 -3.11088 | opp_overlap 2026342, overlap 2026323 2026319 2026330 2026328 AAGCCAGCCAATATA GCCGCC AAT GGCAGC AAATACTGCTTGAAT Cthe_1705 2028087 - 2026399 - | hypothetical protein Cthe_1706 2029256 - 2028099 - | hypothetical protein TERM 2286 2028319 - 2028274 - G 72 -8.7 -3.46178 | gap 1, opp_overlap 2028281, overlap 2028275 AGAAATGCAGCAGAA TCTATAATATCAATACTTTCAA AGC TTGAT-GTATTGATATTATAGG TAAGCCAGCTTAATC TERM 2287 2028318 - 2028275 - G 81 -12.2 -2.66984 | gap 1, opp_overlap 2028281, overlap 2028274 GAAATGCAGCAGAAT CTATAATATCAATACTTTCAA AGC TTGAT-GTATTGATATTATAG GTAAGCCAGCTTAAT Cthe_1707 2031173 - 2029269 - | phage minor structural protein TERM 2288 2030919 - 2030892 - G 91 -7.9 -5.18371 | gap 1 TTCTATAAAATAAAA GGCAAGATCATA GAATA TATG-TCTTGCC CATACCTTAACTTTA TERM 2289 2030990 - 2030978 - G 71 -4.8 -4.65838 | opp_overlap 2030978 TATATATTCTAAAAA GCTG TCCAT CAGC TTTAATAATATTGAG Cthe_1708 2031877 - 2031173 - | phage putative tail component Cthe_1709 2034156 - 2031877 - | Phage-related protein-like protein TERM 2290 2032179 - 2032203 + g 70 -2.8 -5.11836 | overlap 2032190 GTTTCAAACTAAACT CTCCCTCAAT ACTAA AATGAGGAAG TTTTATTTTAGGTAT Cthe_1710 2034689 - 2034366 - | hypothetical protein TERM 2291 2034746 - 2034727 - R 85 -5 -5.60993 | TTGGGTATAAAAAAA CAGGGA TGCTTATT TCCCTG CTAATTAAAAATACT Cthe_1711 2035270 - 2034818 - | hypothetical protein Cthe_1712 2036768 - 2035656 - | integrase catalytic subunit Cthe_1713 2037595 - 2037023 - | phi13 family phage major tail protein Cthe_1714 2037927 - 2037598 - | hypothetical protein Cthe_1715 2038316 - 2037924 - | HK97 family phage protein Cthe_1716 2038635 - 2038309 - | phage head-tail adaptor, putative Cthe_1717 2039204 - 2038632 - | hypothetical protein TERM 2292 2039240 - 2039225 - R 82 -6.1 -5.09259 | opp_overlap 2039225 CACCCCAAAAGAAAA GGAGC ACTAAG GCTCC TTGATTTAACTGCTG Cthe_1718 2039686 - 2039246 - | hypothetical protein Cthe_1719 2040988 - 2039699 - | HK97 family phage major capsid protein TERM 2293 2041036 - 2041013 - R 91 -8.2 -5.093 | opp_overlap 2041035 TTCAAAATAATAAAA GCCCTAAAGT TCAC ACTCTAAGGC AAGTTTTGCTTTTAA Cthe_1720 2041759 - 2041016 - | peptidase S14, ClpP Cthe_1721 2043023 - 2041764 - | HK97 family phage portal protein TERM 2294 2042965 - 2042944 - G 76 -4.5 -5.1101 | gap 1 TCACCATTTAAAAAA TCCTCC-GAA TAT TTCTGAAGGA CTTCAAACAAGGCAT Cthe_1722 2045584 - 2043035 - | phage terminase TERM 2295 2045076 - 2045058 - G 83 -6 -5.10933 | TCAGGCAAAATAAAA GCATCC GCTATTG GGATGC GAAATAATGCTCTAT TERM 2296 2045134 - 2045146 + g 70 -2.7 -5.1523 | TTTGATACATTTCTC CTGTT GTT AATAG TTTTTCTCTTCTGCC TERM 2297 2045429 - 2045415 - G 73 -8.6 -3.69069 | opp_overlap 2045414 GGAATTTCAACATAA GCAGTA TTA TACTGC CTGTATCCATTTTCT Cthe_1723 2046059 - 2045577 - | P27 family phage terminase small subunit TERM 2298 2046111 - 2046092 - R 80 -6.4 -4.8622 | TTGGCTAACTAAAAA GAGCCTAC AATC GTAGACCC TTAAACTTATTTTCT Cthe_1724 2047078 - 2046326 - | hypothetical protein Cthe_1725 2047503 - 2047192 - | hypothetical protein TERM 2299 2047342 - 2047362 + g 75 -7.7 -4.02051 | TATCCAAGGCTGGTC TTTGCAGAA GTC TTTTGCAAA TTCTTTAAATTCCTC Cthe_1726 2048053 - 2047574 - | hypothetical protein TERM 2300 2048149 - 2048175 + r 73 -9.3 -2.91276 | overlap 2048145 2048148 AGTTCCTTCTACTAC CCTAAGGGCGG TAATT CCGCCCTGTGG CTTTATGAAGCCAGC Cthe_1727 2049121 - 2048198 - | hypothetical protein Cthe_1728 2050672 - 2049221 - | DNA-cytosine methyltransferase Cthe_1729 2051909 - 2050674 - | DNA methylase N-4/N-6 TERM 2301 2051798 - 2051808 + g 93 -5.4 -5.63645 | CTACATATCCAAATT CAGT TAA ACTG TTTTTTATCTTTTCA Cthe_1730 2052339 - 2051914 - | hypothetical protein Cthe_1731 2053132 - 2052752 - | HNH endonuclease TERM 2302 2053163 - 2053204 + r 74 -3.8 -5.17576 | gap 1, opp_overlap 2053173, overlap 2053172 2053173 2053191 CAAGTTATGTTTTTA CATATGAAAACCACCACAG TTTTT CTGTGATGGCTT-CATCTG TTTTTTCACTTCGTC TERM 2303 2053195 - 2053173 - R 93 -9.9 -4.39166 | opp_overlap 2053172 2053163 2053173 2053191 TTTTACATATGAAAA CCACCACAG TTTTT CTGTGATGG CTTCATCTGTTTTTT Cthe_1732 2054031 - 2053627 - | hypothetical protein Cthe_1733 2054335 - 2054033 - | hypothetical protein Cthe_1734 2056407 - 2054533 - | P4 family phage/plasmid primase Cthe_1735 2058299 - 2056608 - | phage DNA polymerase TERM 2304 2058170 - 2058221 + g 89 -9.3 -4.81685 | gap 2, opp_overlap 2058186, overlap 2058186 TCCAGATATGTTCTT TATGTTCTTCATAAAATGATGCTAA TTTC TTAGCATCA-TTTATAAAG-ACATA TTTTTGATGATTAAT TERM 2305 2058207 - 2058186 - G 90 -10.3 -4.37092 | opp_overlap 2058170 2058186 ATGTTCTTCATAAAA TGATGCTAA TTTC TTAGCATCA TTTATAAAGACATAT TERM 2306 2058186 - 2058207 + g 84 -10.3 -3.86524 | opp_overlap 2058186, overlap 2058170 ATGTTCTTCATAAAA TGATGCTAA TTTC TTAGCATCA TTTATAAAGACATAT Cthe_1736 2058760 - 2058302 - | hypothetical protein TERM 2307 2058789 - 2058800 + r 83 -5.8 -5.22794 | TATTTTTATTTTCTA GAGC GTCT GCTC TTTTTTACTGATTCT Cthe_1737 2060371 - 2058779 - | phage NTP-binding protein Cthe_1738 2060658 - 2060293 - | hypothetical protein TERM 2308 2060634 - 2060646 + gr 70 -2.7 -5.00895 | AGTATTTTATAACTT TAGTT TGA AACTG TTTTTCTGTCATAAC Cthe_1739 2061782 - 2060655 - | SNF2-related protein Cthe_1740 2062706 - 2061942 - | BRO-like protein TERM 2309 2062122 - 2062133 + g 80 -4.4 -5.26875 | opp_overlap 2062122 ATTACGACCATAGAA GTTG TTAT CAAC TTTTTTAATTACACC TERM 2310 2062538 - 2062560 + g 73 -7.6 -4.08939 | opp_overlap 2062541 CACCACCACTTGTAA GGACTCGGTG TTT CACCGACCCC TTTGTATGCCTATTA Cthe_1741 2062973 - 2062722 - | hypothetical protein Cthe_1742 2063317 - 2062994 - | helix-turn-helix, type 11 containing protein TERM 2311 2063969 - 2063940 - R 77 -7.9 -4.09243 | opp_overlap 2063940 2063943, overlap 2063943 2063946 CATATTGTTTCAAAA TAACAACACGAGC TATA GCTCCTGCTGTCA TCTTTATATTGAAAT TERM 2312 2063966 - 2063943 - R 76 -7.4 -4.17316 | opp_overlap 2063940 2063943, overlap 2063940 2063946 ATTGTTTCAAAATAA CAACACGAGC TATA GCTCCTGCTG TCATCTTTATATTGA Cthe_1743 2064683 - 2063973 - | hypothetical protein Cthe_1744 2065068 - 2064700 - | hypothetical protein Cthe_1745 2065463 - 2065083 - | XRE family transcriptional regulator TERM 2313 2065226 - 2065242 + g 72 -9.5 -3.0752 | opp_overlap 2065221, overlap 2065228 AATCAGGTAAGTCCA TAGGGAT TTC ATCCCTA TCTTCAGATGCTATA Cthe_1746 2066308 - 2065520 - | hypothetical protein Cthe_1747 2067026 - 2066610 - | T/G mismatch-specific endonuclease TERM 2314 2067601 - 2067631 + r 100 -10.6 -5.17786 | opp_overlap 2067601 TAATTTAATTTAAAA TCCACTTTGATAAA TTA TCTGTCAAAGTGGA TTTTTGCTTTTGTTC TERM 2315 2067631 - 2067601 - R 95 -10.6 -4.29845 | opp_overlap 2067601 TAATTTAATTTAAAA TCCACTTTGATAAA TTA TCTGTCAAAGTGGA TTTTTGCTTTTGTTC Cthe_1748 2069217 - 2067664 - | hypothetical protein Cthe_1749 2070282 - 2069230 - | DNA-cytosine methyltransferase Cthe_1750 2070510 - 2070301 - | hypothetical protein TERM 2316 2070846 - 2070832 - R 100 -11.4 -5.60864 | CACACATGAAAAAAA GGGGCA AAT TGCCCC AAGCCTTTGATTTCA Cthe_1751 2072225 - 2070864 - | RNA methyltransferase TERM 2317 2072049 - 2072070 + g 84 -8.1 -4.72486 | gap 1, opp_overlap 2072051 CTCCAAAACTTGAAG GAGTT-TGCC AAT GGCATAACTC TTTTTCACCTTTATA TERM 2318 2072452 - 2072439 - R 81 -2.3 -6.09133 | overlap 2072440 TACGGCAAAAAAAAA GCCCT GTTG AGGGA CAAGAATTTGAATCA Cthe_1752 2073333 - 2072533 - | ABC transporter related protein TERM 2319 2073171 - 2073191 + g 71 -6.1 -4.18197 | GTCGAAGAGCTCTTG CCATGCTCT TTA AAAGCGTGG TTTTCCCTGACCCGT Cthe_1753 2074380 - 2073334 - | transport system permease protein TERM 2320 2073880 - 2073859 - G 72 -3.6 -5.1615 | GGAAGATGCAAAAAA GCTGACCG CCACCC CGGCAAGC AAAAGATGGGTGTTG Cthe_1754 2075352 - 2074396 - | periplasmic binding protein TERM 2321 2075229 - 2075248 + g 79 -3.4 -5.51353 | CGTTATTATTATCAC CGGCCCCA TCAG TTGGCCCG TTTTTATTGTTTTTA TERM 2322 2075304 - 2075292 - G 74 -4.9 -4.81523 | opp_overlap 2075293 2075296 2075296, overlap 2075296 2075297 AAGCAAAAATCAAAA TTAAC GCC GTTAA CAGCGGCAGTATCTT TERM 2323 2075497 - 2075485 - R 72 -2.7 -5.4588 | opp_overlap 2075489, overlap 2075489 TAAAATCACAAAAAA TTAAG CCT CCTAA CCTACGCAGAGATTA TERM 2324 2075518 - 2075489 - R 86 -9.4 -4.0014 | opp_overlap 2075489, overlap 2075485 ATCACAAAAAATTAA GCCTCCTAACCT ACGCAG AGATTAAGAGGC TGCTGTTCGTTGCAG Cthe_1755 2075778 - 2075494 - | hypothetical protein TERM 2325 2075862 - 2075885 + r 74 -6 -4.64676 | overlap 2075863 ACTCAATTACTCTAC CTTTGTTCCG CATT CGGAACAGAA TTTTGTTCCCGGTGA TERM 2326 2075863 - 2075884 + r 80 -9.5 -3.38324 | overlap 2075862 CTCAATTACTCTACC TTTGTTCCG CATT CGGAACAGA ATTTTGTTCCCGGTG Cthe_1756 2077019 - 2075853 - | putative virion core protein (lumpy skin disease virus)-like protein TERM 2327 2077632 - 2077613 - g 93 -7.2 -5.47431 | TGAAGACAGAAAAAA GGTTATTG CCGT CAACAACC AGCAAATGAACTTGA Cthe_1757 2077401 - 2078330 + | peptidase M23B Cthe_1758 2078367 - 2078804 + | hypothetical protein TERM 2328 2078884 - 2078911 + T 86 -7.1 -4.82998 | TTGGAAATTACACAG GTCAGGTGAAG CCATGT TTTCATCTGAC TTTATTTTGCTTTGC Cthe_1759 2079608 - 2078937 - | hypothetical protein TERM 2329 2081504 - 2081480 - g 77 -4.9 -4.85195 | AAAAGAAGCCAAAAA GCACCATCGTC TAT GACGAGACTGC CGCATATGTTATGGT Cthe_1760 2079823 - 2082297 + | 1A family penicillin-binding protein TERM 2330 2082329 - 2082370 + T 71 -8.3 -3.35237 | gap 1, opp_overlap 2082337, overlap 2082337 ATGAATAAACCCAAT TG-TAAAAAGCTCTGGAT TTAAAGT GTCCAGAGCTTTTTGGCA TTCACTTATTATTTC TERM 2331 2082361 - 2082337 - T 80 -7.2 -4.67234 | opp_overlap 2082337 2082329 ACCCAATTGTAAAAA GCTCTGGA TTTAAAGTG TCCAGAGC TTTTTGGCATTCACT TERM 2332 2082337 - 2082361 + T 82 -7.9 -4.67234 | opp_overlap 2082337, overlap 2082329 ACCCAATTGTAAAAA GCTCTGGAT TTAAAGT GTCCAGAGC TTTTTGGCATTCACT Cthe_1761 2083776 - 2082568 - | hypothetical protein Cthe_1762 2085060 - 2083795 - | RND family efflux transporter MFP subunit TERM 2333 2084412 - 2084449 + g 77 -7.9 -4.2757 | gap 1, overlap 2084413 TCTTTTGAATTTTCT TCTCAAGGTCGCTTATAC TAA GTATAAG-GGCGTTGAGG TTCTCTTTTTTTACC TERM 2334 2084413 - 2084448 + g 70 -9.2 -3.14915 | gap 1, overlap 2084412 CTTTTGAATTTTCTT CTCAAGGTCGCTTATAC TAA GTATAAG-GGCGTTGAG GTTCTCTTTTTTTAC Cthe_1763 2085797 - 2085057 - | ABC transporter related protein TERM 2335 2085876 - 2085851 - R 70 -8.3 -3.11609 | overlap 2085853 2085857 AATCTAACATATACA GATAAACACCC TTTT GGGTGCTTAAC AACAATAAAAATTTT TERM 2336 2085874 - 2085853 - R 76 -9.5 -3.10895 | overlap 2085851 2085857 TCTAACATATACAGA TAAACACCC TTTT GGGTGCTTA ACAACAATAAAAATT TERM 2337 2085870 - 2085857 - R 83 -8.1 -4.20086 | overlap 2085853 2085851 ACATATACAGATAAA CACCC TTTT GGGTG CTTAACAACAATAAA Cthe_1764 2087100 - 2086012 - | Outer membrane protein-like protein TERM 2338 2086302 - 2086315 + g 71 -5.3 -4.55544 | CCACTTTCGCCAGCT CAAGA TTTG TCTTG TTTTCATTATATATT TERM 2339 2086971 - 2086987 + g 71 -7.3 -3.90316 | opp_overlap 2086962 2086955, overlap 2086962 2086969 CAAGAACAGCCTGTT TGCTGTT TTC GACAGCA TATTTTTGAAAACCT Cthe_1765 2088266 - 2087115 - | hypothetical protein Cthe_1766 2089167 - 2088334 - | gamma-glutamyl kinase TERM 2340 2089338 - 2089383 + r 77 -9.3 -3.35679 | opp_overlap 2089351, overlap 2089342 GTATACCGGTACAGG TGTATATAAAAAAGCCGCC CGGCTCAA GGCAGCTTTTTTATATAAA TTGTAAATCCGGAAA TERM 2341 2089342 - 2089379 + r 77 -10.1 -2.6063 | opp_overlap 2089351, overlap 2089338 ACCGGTACAGGTGTA TATAAAAAAGCCGCC CGGCTCAA GGCAGCTTTTTTATA TAAATTGTAAATCCG TERM 2342 2089370 - 2089351 - R 82 -4.9 -5.36441 | opp_overlap 2089342 2089338 GGTGTATATAAAAAA GCCGCCC GGCTCA AGGCAGC TTTTTTATATAAATT Cthe_1767 2090412 - 2089411 - | hypothetical protein TERM 2343 2089820 - 2089842 + g 82 -6.3 -4.84527 | overlap 2089824 2089834 TAAACTTTAACCTTT GCCTTTTCT CCGTT GGAGAAGGC TTTTTCCTGTATAAC Cthe_1768 2091135 - 2090443 - | NifU-like domain-containing protein Cthe_1769 2091391 - 2091783 + | hypothetical protein TERM 2344 2091762 - 2091783 + T 72 -5.9 -4.36914 | opp_overlap 2091761 2091762 AAAAATATTGAAAAT TCAGGAG ATATTAGA CTCCTGA TTTTCTGAAAAACCG Cthe_1770 2092143 - 2091772 - | hypothetical protein TERM 2345 2091864 - 2091887 + g 86 -9.6 -4.03586 | opp_overlap 2091849, overlap 2091867 GTTCAGTTAAACCCC GAACCCCTTT TTCC ACAGGGGTTC TTCTTCTCTTTACCC Cthe_1771 2092364 - 2092918 + | rubrerythrin TERM 2346 2092931 - 2092913 - T 77 -4 -5.33866 | GAAATGTATAAAAAA TTCTAAAA AAC TTTTAAAA TTCCCTATTGCAAAT Cthe_1772 2094010 - 2093222 - | hypothetical protein Cthe_1773 2096609 - 2094165 - | peptidase S16, lon-like protein Cthe_1774 2097349 - 2096891 - | SSU ribosomal protein S18P alanine acetyltransferase Cthe_1775 2098071 - 2097361 - | peptidase M22, glycoprotease TERM 2347 2097570 - 2097600 + g 72 -3.4 -5.04385 | gap 1, overlap 2097570 2097571 2097573 TAAAATATTCTTCAT G-CATTTTTGCAG CATCCC CGGCAAAAATGAC TTTTTTGCCCATGTC Cthe_1776 2098553 - 2098068 - | hypothetical protein Cthe_1777 2099742 - 2098540 - | amidohydrolase Cthe_1778 2100997 - 2100038 - | copper amine oxidase-like protein TERM 2348 2100340 - 2100369 + g 77 -5 -5.00616 | GATCATCTTCTGTTT TTTCAGTATCCG AAGTGC CGGATACCGCAA TTTTTTCAAGCGCAG TERM 2349 2101065 - 2101048 - R 71 -2 -5.45726 | opp_overlap 2101059, overlap 2101049 GACAGCCCAAAAAAA CCTGTT CATATT AACAGA GTTATTTCCTATAAT Cthe_1779 2102065 - 2101673 - | hypothetical protein Cthe_1780 2102670 - 2102137 - | hypothetical protein Cthe_1781 2103351 - 2103034 - | hypothetical protein TERM 2350 2103514 - 2103487 - R 93 -4.8 -6.02914 | TGCACACAAAAAAAA CCGCCAAAGG GATTTAAA CCTATGACGG CTGTATGCTTGTAAT rpsI 2103972 - 2103580 - | 30S ribosomal protein S9 rplM 2104432 - 2103995 - | 50S ribosomal protein L13 Cthe_1784 2104822 - 2105217 + | hypothetical protein TERM 2351 2105261 - 2105224 - T 89 -8.5 -4.64844 | opp_overlap 2105227, overlap 2105227 TTGAGATAGATAAAA CAAGAGCCATTACTTCT AAAA AGCAGTATTGGCTCTTT TCATTTGCTCTGCGA TERM 2352 2105227 - 2105258 + T 93 -10.2 -4.6038 | opp_overlap 2105224 2105227 AGATAGATAAAACAA GAGCCATTACTTCT AAAA AGCAGTATTGGCTC TTTTCATTTGCTCTG TERM 2353 2105258 - 2105227 - T 93 -10.2 -4.42325 | opp_overlap 2105227, overlap 2105224 AGATAGATAAAACAA GAGCCATTACTTCT AAAA AGCAGTATTGGCTC TTTTCATTTGCTCTG Cthe_1785 2106402 - 2105320 - | DNA integrity scanning protein DisA TERM 2354 2105899 - 2105911 + g 73 -7.7 -3.91164 | opp_overlap 2105907, overlap 2105907 GTTTATAGCCTCAAC CAAGG CAA CCTTG TATTTTTCAAGGGTT Cthe_1786 2107797 - 2106433 - | DNA repair protein RadA Cthe_1787 2109731 - 2107797 - | glycoside hydrolase 15-related TERM 2355 2109938 - 2109952 + H 73 -4.4 -4.99435 | ACATATTTTATTATT TATTTA TCA TAAATA TTTTTCCTTATTAAG TERM 2356 2110927 - 2110913 - g 71 -4.2 -5.00616 | overlap 2110914 CCGTTGTTTAAAAAA GCCTTC AGG GAAGGA GATTTAATAGCTTTT TERM 2357 2110963 - 2110979 + G 79 -5.8 -4.84359 | overlap 2110964 CGCGGTTTACTTGTT TCAGCC CATAA GGCTGG TTTTTATCGGGCTGA Cthe_1788 2110040 - 2111296 + | glycosyl transferase family protein TERM 2358 2111355 - 2111328 - T 100 -8.5 -5.9003 | opp_overlap 2111328 AAAGCAATAAAAAAA GAGCCAAAGGA ATTGCG TCCTCTGACTC TTTTCCTCTTAGCCC Cthe_1789 2113820 - 2111364 - | ATPase AAA-2 TERM 2359 2111539 - 2111549 + g 70 -5.4 -4.41348 | opp_overlap 2111539 2111548, overlap 2111548 CTTGCTCCGTACACA GGAT CAA ATCC TTTCTTTGCAAGAAG Cthe_1790 2114888 - 2113866 - | ATP:guanido phosphotransferase Cthe_1791 2115435 - 2114929 - | UvrB/UvrC protein Cthe_1792 2115943 - 2115482 - | Firmicute transcriptional repressor of class III stress genes TERM 2360 2115589 - 2115601 + g 84 -7.7 -4.67353 | overlap 2115581 TGGTAGCTGCTTTAA GAAGC ATG GCTTC TTTTTCCGTCACTAC TERM 2361 2115673 - 2115683 + g 71 -6.8 -4.02334 | opp_overlap 2115646 GCTGTGAAATGCTGT CTCC CAT GGAG TTTATGATGTGCATA Cthe_1793 2116971 - 2116267 - | hypothetical protein TERM 2362 2117106 - 2117130 + r 74 -5.7 -4.56775 | opp_overlap 2117106 ACTCAGATTCAAAAA GGGTACGGT CTTTATT ACCATACCC TTTTTCGCGGCAAAT TERM 2363 2117130 - 2117106 - R 82 -7.9 -4.71061 | opp_overlap 2117106 ACTCAGATTCAAAAA GGGTACGGT CTTTATT ACCATACCC TTTTTCGCGGCAAAT Cthe_1794 2119257 - 2117170 - | elongation factor G TERM 2364 2119282 - 2119299 + H 76 -7.1 -4.18018 | CCCTTGTATATTTAT TGAACTT ATAA AAGTTCA TTTTCACTACCACAA TERM 2365 2119947 - 2119937 - g 70 -5.4 -4.386 | opp_overlap 2119941 TAATCGGCGACAAAA GGAA GCT TTCC GACGTACCTTTAGAG TERM 2366 2120562 - 2120544 - g 71 -6.7 -3.96892 | opp_overlap 2120556 AACGGCTACCAGAAA CACACTG GATAT CAGTGCG GTGCCTGTTGTAAAA TERM 2367 2120669 - 2120656 - g 70 -9.5 -2.71712 | overlap 2120655 CTTCCTCTTTCAAAG GCGGC AATT GCCGC GGGCGCAGACGGACT TERM 2368 2120752 - 2120740 - g 70 -7.7 -3.61715 | opp_overlap 2120740 2120739 GACGCTGCCCAACAA CTTCC GCC GGAAG ATTTCTGTGAACTGT Cthe_1795 2119801 - 2120826 + | 3-deoxy-D-arabinoheptulosonate-7-phosphate synthase TERM 2369 2121172 - 2121152 - g 70 -9.7 -2.6006 | overlap 2121151 2121143 2121140 2121139 AATTCATTGGATAAT CCCCCCT GCTTCAT AGGGGGG CATCCAATGGCCGGT TERM 2370 2121860 - 2121834 - g 93 -13 -3.28791 | opp_overlap 2121825, overlap 2121835 2121837 AGGGGTGTCTCAGAA TCACACTGCCCG ATT CAGGCAGTGTGG CCGAGGCTTATGAAC TERM 2371 2121859 - 2121835 - g 100 -16.5 -2.57132 | opp_overlap 2121825, overlap 2121834 2121837 GGGGTGTCTCAGAAT CACACTGCCCG ATT CAGGCAGTGTG GCCGAGGCTTATGAA TERM 2372 2121857 - 2121837 - g 90 -13.3 -2.82623 | opp_overlap 2121825, overlap 2121835 2121834 GGTGTCTCAGAATCA CACTGCCCG ATT CAGGCAGTG TGGCCGAGGCTTATG Cthe_1796 2120816 - 2121913 + | prephenate dehydrogenase Cthe_1797 2122003 - 2123274 + | 3-phosphoshikimate 1-carboxyvinyltransferase TERM 2373 2123337 - 2123360 + T 87 -5.2 -5.56264 | opp_overlap 2123337 2123331 TACCGATAATAAAAA CCGGACGCTG CAAA TATTGTCCGG TTTTTTATATTTACA Cthe_1798 2124061 - 2123408 - | redox-sensing transcriptional repressor Rex TERM 2374 2124265 - 2124281 + H 71 -3.1 -5.22039 | ATTTTGTTATATTTT TTATTTT TCT AAGATAA TTTTTTGGGTTTGCA TERM 2375 2124384 - 2124361 - g 90 -11.2 -3.8211 | opp_overlap 2124365, overlap 2124374 TTGGAGTCACAACAA TACTGAAAGA TATT TCTTTCAGTA TCAATGATACTGACA Cthe_1799 2124309 - 2126225 + | ABC transporter related protein TERM 2376 2127223 - 2127205 - g 81 -7.4 -4.61527 | AAAACGTTGTAAAAA CTTTGGTC TCA GACCCAAG AAACAGAAATGCCTT Cthe_1800 2126418 - 2127929 + | peptidoglycan-binding LysM Cthe_1801 2128727 - 2127963 - | ABC transporter related protein Cthe_1802 2129537 - 2128728 - | cobalt ABC transporter, inner membrane subunit CbiQ TERM 2377 2129563 - 2129583 + r 81 -3.1 -5.74086 | opp_overlap 2129549 2129564, overlap 2129549 2129564 TCCCAACTGAACAAA AGCTGGGTT TTT AGCCCTGCC TTTTTTATTTCATTT TERM 2378 2129564 - 2129582 + r 71 -6.6 -4.00791 | opp_overlap 2129549 2129564, overlap 2129549 2129563 CCCAACTGAACAAAA GCTGGGTT TTT AGCCCTGC CTTTTTTATTTCATT Cthe_1803 2130655 - 2129597 - | cobalamin (vitamin B12) biosynthesis CbiM protein TERM 2379 2130721 - 2130686 - R 95 -10.7 -4.4595 | gap 1, opp_overlap 2130686 2130717 TCATAAAATTTAAAA CCCAAAAAG-GACTAT TTCAT ATAGCCTCTTTTTGGG TTCATCCCAATTTAA TERM 2380 2130686 - 2130721 + r 72 -8.5 -3.17714 | gap 1, opp_overlap 2130686, overlap 2130717 TCATAAAATTTAAAA CCCAAAAAG-GACTAT TTCAT ATAGCCTCTTTTTGGG TTCATCCCAATTTAA Cthe_1804 2131666 - 2130944 - | cell wall hydrolase/autolysin TERM 2381 2131179 - 2131191 + g 80 -7.7 -4.3767 | TTCTGTATACAATCT GCAAG CTT CTTGC TTTCTTCTGATCTCG Cthe_1805 2132716 - 2131784 - | response regulator receiver modulated diguanylate cyclase TERM 2382 2132893 - 2132871 - R 100 -6.9 -5.64421 | opp_overlap 2132871 AGGCCAAACAAAAAA GCGGCGGCC TTCAC AACCACCGC TTTTTTACAGCCAAT Cthe_1806 2139473 - 2132940 - | cellulosome enzyme, dockerin type I TERM 2383 2136999 - 2137026 + g 82 -11.4 -3.20901 | overlap 2136999 TTCTTCTGTACATGT CGGTTCCTTTAC CGTT GTAAATGAACCG TTAAATTGGTGCCCT TERM 2384 2137737 - 2137764 + g 82 -11.4 -3.20901 | overlap 2137737 TTCTTCTGTACATGT CGGTTCCTTTAC CGTT GTAAATGAACCG TTAAATTGGTGCCCT TERM 2385 2139101 - 2139121 + g 74 -9.1 -3.53279 | opp_overlap 2139100, overlap 2139100 2139102 CAGGTTCAATATCAT TCATATCCA AGT TGGATATGG TATTATCTTTATCAC TERM 2386 2139102 - 2139120 + g 72 -10.4 -2.71244 | opp_overlap 2139100, overlap 2139101 2139100 AGGTTCAATATCATT CATATCCA AGT TGGATATG GTATTATCTTTATCA TERM 2387 2140913 - 2140889 - R 76 -8.7 -3.54177 | CCGAAAAGCAAGCAA GCTTTCTTCTG CAG CAAAAAAAAGC GCTAAAGCAGCCAAT TERM 2388 2140933 - 2140920 - R 75 -8.1 -3.71363 | overlap 2140914 AAAAAAAGCGCTAAA GCAGC CAAT GCTGC CACGCCTTCCAAAAG TERM 2389 2141027 - 2141004 - R 100 -9.7 -5.31275 | opp_overlap 2141007 TTGTATGATAAAAAA GAAGAGAGT TAACCG ACTCTCTTC CTATGAAGCCCTTCG Cthe_1807 2142780 - 2141116 - | hypothetical protein TERM 2390 2142533 - 2142498 - G 71 -3.8 -4.92783 | opp_overlap 2142532, overlap 2142501 2142506 2142510 2142521 2142524 AATTCAGTACAAAAA CCAGGACAGCAACTGC CGCA ACAGCAGCCGCTCCGG CCAGCCATGTCCATT TERM 2391 2142528 - 2142506 - G 72 -9.8 -2.94827 | overlap 2142498 2142501 2142510 2142521 2142524 ACAAAAACCAGGACA GCAACTGCCG CAA CAGCAGCCGC TCCGGCCAGCCATGT TERM 2392 2142556 - 2142567 + g 73 -5.8 -4.64598 | TGTCCATTTTCTTTT TCCG GCGG CGGA TTTTTGCGATAATTG Cthe_1808 2143093 - 2144313 + | transposase IS116/IS110/IS902 Cthe_1809 2144918 - 2144379 - | ECF subfamily RNA polymerase sigma-24 factor TERM 2393 2145116 - 2145071 - R 100 -14.2 -5.08731 | opp_overlap 2145072 2145073, overlap 2145073 CAACAAACAATAAAA TACCCCCATTTATCGGCGAT ATTTAA ATCACCGATAAATGGAGGCT TTATTACACAATTAA TERM 2394 2145072 - 2145115 + r 100 -11.1 -4.1673 | opp_overlap 2145071 2145073, overlap 2145073 AACAAACAATAAAAT ACCCCCATTTATCGGCGAT ATTTAA ATCACCGATAAATGGAGGC TTTATTACACAATTA TERM 2395 2145114 - 2145073 - R 100 -19 -4.12859 | opp_overlap 2145073 2145072, overlap 2145071 ACAAACAATAAAATA CCCCCATTTATCGGCGAT ATTTAA ATCACCGATAAATGGAGG CTTTATTACACAATT TERM 2396 2145073 - 2145114 + r 100 -14.6 -3.09556 | opp_overlap 2145071 2145073, overlap 2145072 ACAAACAATAAAATA CCCCCATTTATCGGCGAT ATTTAA ATCACCGATAAATGGAGG CTTTATTACACAATT Cthe_1810 2147400 - 2145148 - | peptidase M56, BlaR1 TERM 2397 2146912 - 2146931 + g 77 -5 -4.88293 | AAATATGTCTGTTAA CCTCTGAT CCGT ATCACAGG TTTCTTTTTGAAGTT TERM 2398 2147089 - 2147113 + g 70 -5.7 -4.39724 | overlap 2147082 2147091 GTTAAAATTCGGCTG TACCGGTATTT CAT AAGTCCCGGTG TTATTTATTTCCTTT Cthe_1811 2147777 - 2147403 - | CopY family transcriptional regulator TERM 2399 2147444 - 2147456 + g 78 -2.7 -5.38549 | TCAGGAATTCCAAAT CTTTT CTA GAAAG TTTTTGTTCTTTAAC Cthe_1812 2148870 - 2148082 - | urease accessory protein UreD TERM 2400 2148364 - 2148336 - G 100 -14.1 -4.57569 | GCACTTTTGGAAAAA GGAACTGATTTTC AAG AAAAATCAGTTCC CCGCCGTAATAAATC TERM 2401 2148739 - 2148765 + g 73 -8.7 -3.64716 | opp_overlap 2148737, overlap 2148745 AAGATTCATAAATCC GCCATGCCCTT CATAA AAGGGTTTGGC TATTTTAAAAGGTGC Cthe_1813 2149482 - 2148874 - | urease accessory protein UreG Cthe_1814 2150259 - 2149537 - | urease accessory protein UreF TERM 2402 2149672 - 2149662 - GR 71 -6.8 -4.0896 | opp_overlap 2149662 AAAGCCTTCGGAAAA TGCC ATG GGCA TTGAATAAAATCTTC TERM 2403 2149823 - 2149811 - GR 71 -4.1 -4.84761 | AGATTTGTACAAAAA CCGTA CAT TACAG GATACGAAACTTCCA ureE 2150692 - 2150231 - | urease accessory protein UreE ureC 2152555 - 2150837 - | urease subunit alpha Cthe_1817 2152925 - 2152557 - | urease, beta subunit Cthe_1818 2153243 - 2152941 - | urease, gamma subunit Cthe_1819 2154118 - 2153414 - | ABC transporter related protein Cthe_1820 2154860 - 2154102 - | ABC transporter related protein Cthe_1821 2155998 - 2154850 - | inner-membrane translocator Cthe_1822 2156918 - 2156010 - | inner-membrane translocator TERM 2404 2156686 - 2156673 - G 71 -6.7 -4.0386 | CAAATAACCGACAAA TCCTG TAAT CAGGA ACGAAAGAGGTATTG Cthe_1823 2158316 - 2157057 - | extracellular ligand-binding receptor TERM 2405 2158532 - 2158486 - R 100 -11.1 -5.09259 | opp_overlap 2158486 2158523 2158524 2158526 GATTTTAAAACAAAA GGTGCTACAAACAACGCAC TAAATCACT GTGCATCATTTATAGCACC TATGCTATACTTCAT Cthe_1824 2159879 - 2158791 - | two component AraC family transcriptional regulator TERM 2406 2158898 - 2158908 + g 70 -2.6 -5.09762 | AGCCTAATATCTCGC TTAT TTC ATAA TTTTTATATTCACCT TERM 2407 2159535 - 2159519 - G 71 -6.5 -4.23674 | TTTCATCAAGATAAA CCTTGAC CCG GTCCAGG GCTTCACCCAAAGTT Cthe_1825 2162709 - 2159911 - | Hpt sensor hybrid histidine kinase TERM 2408 2162676 - 2162720 + g 93 -10.8 -5.07652 | opp_overlap 2162681, overlap 2162680 2162681 GTTCCTCAATATCAA AAAAAGCGCAGAAGTCAAGT TCATC ACTTGGCATCTGCGCCTTTA TTTTATTTTACAACG TERM 2409 2162680 - 2162716 + g 95 -11.6 -5.04377 | opp_overlap 2162681, overlap 2162676 2162681 CTCAATATCAAAAAA AGCGCAGAAGTCAAGT TCATC ACTTGGCATCTGCGCC TTTATTTTATTTTAC TERM 2410 2162681 - 2162715 + g 100 -15.1 -3.60186 | opp_overlap 2162681, overlap 2162680 2162676 TCAATATCAAAAAAA GCGCAGAAGTCAAGT TCATC ACTTGGCATCTGCGC CTTTATTTTATTTTA TERM 2411 2162715 - 2162681 - G 100 -12.9 -5.63374 | opp_overlap 2162681 2162680 2162676 TCAATATCAAAAAAA GCGCAGAAGTCAAGT TCATC ACTTGGCATCTGCGC CTTTATTTTATTTTA Cthe_1826 2163000 - 2164091 + | response regulator receiver sensor signal transduction histidine kinase Cthe_1827 2165485 - 2164514 - | copper amine oxidase-like protein Cthe_1828 2166121 - 2165528 - | hypothetical protein TERM 2412 2165824 - 2165804 - G 73 -8.3 -3.7319 | ATTCATAACATATAA CCTTTTACC TCC GGTATAAGG ATTAACAATATCCTC Cthe_1829 2169461 - 2166165 - | chromosome segregation ATPases-like protein TERM 2413 2169749 - 2169712 - R 100 -6.6 -6.07374 | gap 2, opp_overlap 2169712 ATAAAAAATAAAAAA CCTCTCAAC-AC-AAAAG TTAT CTTTTAGTCATTGAGAGG TCTTAGAATCATTTT Cthe_1830 2171014 - 2169800 - | hypothetical protein Cthe_1831 2172122 - 2171091 - | hypothetical protein TERM 2414 2171422 - 2171439 + g 74 -4.9 -4.74084 | overlap 2171408 TCCATAGACATTTTC CAAAAGT CATG GCTTTTG TTTTCATTTTCATTT Cthe_1832 2173807 - 2172278 - | hypothetical protein TERM 2415 2173371 - 2173387 + g 77 -9.5 -3.54307 | overlap 2173374 AGATATTTTACTTTT GAACCAT TCC ATGGTTC TTTAACCCACATCTT Cthe_1833 2174660 - 2173851 - | copper amine oxidase-like protein Cthe_1834 2175305 - 2174712 - | hypothetical protein Cthe_1835 2178650 - 2175342 - | viral A-type inclusion repeat-containing protein TERM 2416 2176985 - 2177001 + g 88 -3.7 -5.80003 | overlap 2176988 TACCAAGTATATTCT TTACATG TTC CATGTCA TTTTTTATTTCTTCC TERM 2417 2179065 - 2179047 - R 100 -7.4 -6.38655 | opp_overlap 2179047 AAACATAAAAAAAAA CGGAAGCC GAA AACTTCCG TCATCTTCCCAAATC Cthe_1836 2180101 - 2179133 - | hypothetical protein TERM 2418 2180315 - 2180283 - R 100 -10 -5.67063 | opp_overlap 2180283 TGCAGCATAAAAAAA TCCCCAAAAGCTTT TATGC AAAGCTCCTGAGGA TTTCATTCAGGCCGG Cthe_1837 2180848 - 2180339 - | hypothetical protein Cthe_1838 2183049 - 2181190 - | glycoside hydrolase family protein TERM 2419 2183084 - 2183111 + H 93 -10 -4.16943 | opp_overlap 2183086 2183091 2183104, overlap 2183086 2183087 TAAAATTATTTTATA TATCCAAGCTTT TCAT AAAGCTTGGGTG TTTTCCCATGTCAAC TERM 2420 2183086 - 2183109 + H 87 -10.4 -3.68378 | opp_overlap 2183086 2183091 2183104, overlap 2183084 2183087 AAATTATTTTATATA TCCAAGCTTT TCAT AAAGCTTGGG TGTTTTCCCATGTCA TERM 2421 2183087 - 2183108 + H 88 -11.7 -2.80545 | opp_overlap 2183086 2183091 2183104, overlap 2183086 2183084 AATTATTTTATATAT CCAAGCTTT TCAT AAAGCTTGG GTGTTTTCCCATGTC Cthe_1839 2183456 - 2184517 + | biotin synthase TERM 2422 2184667 - 2184701 + T 74 -8.7 -3.19778 | opp_overlap 2184667 2184672, overlap 2184672 GGCCGGTGACAAATA CAAAAGCGATGGAAT ATCAC ATACCATCGCTTTTA CTTTTAATACATTTT TERM 2423 2184701 - 2184667 - T 90 -11.6 -3.51934 | opp_overlap 2184667 2184672, overlap 2184672 GGCCGGTGACAAATA CAAAAGCGATGGAATA TCA CATACCATCGCTTTTA CTTTTAATACATTTT TERM 2424 2184672 - 2184696 + T 89 -8.6 -4.70319 | opp_overlap 2184667 2184672, overlap 2184667 GTGACAAATACAAAA GCGATGGAAT ATCAC ATACCATCGC TTTTACTTTTAATAC TERM 2425 2184696 - 2184672 - T 93 -9.3 -4.84918 | opp_overlap 2184672 2184667, overlap 2184667 GTGACAAATACAAAA GCGATGGAATA TCA CATACCATCGC TTTTACTTTTAATAC Cthe_1840 2185710 - 2184775 - | cysteine synthase Cthe_1841 2186604 - 2185795 - | hypothetical protein TERM 2426 2186328 - 2186356 + g 82 -11.2 -3.22521 | gap 1, opp_overlap 2186323, overlap 2186304 2186324 ACAGATAACATCTGT TG-GGAGGGTTTT CGGC AAAACCCTCCACA TTGAGTTCCTCTGAA Cthe_1842 2187902 - 2186610 - | O-acetylhomoserine/O-acetylserine sulfhydrylase Cthe_1843 2188412 - 2187963 - | BadM/Rrf2 family transcriptional regulator Cthe_1844 2188933 - 2188472 - | BadM/Rrf2 family transcriptional regulator Cthe_1845 2189897 - 2188980 - | homoserine O-succinyltransferase Cthe_1846 2191372 - 2189981 - | periplasmic sensor signal transduction histidine kinase TERM 2427 2190431 - 2190451 + g 70 -8.4 -3.33833 | opp_overlap 2190431 2190430 2190428 CGACATGTCAAATAC GGTTTTGT CCAAT ACAAAACC TTCACTTTCGTATTT TERM 2428 2190793 - 2190803 + g 85 -6.8 -5.11033 | overlap 2190790 TAACCCTGGCTATGG GCTG GCT CAGC TTTTTTGCCATTATA Cthe_1847 2192101 - 2191397 - | two component transcriptional regulator TERM 2429 2192175 - 2192207 + r 80 -7.8 -4.26188 | gap 2, opp_overlap 2192175 2192176, overlap 2192182 AAACTTTTAAAAAAA GCC-TA-TAGGGGGCG TGG CACCCCCTATTAAGGC TTTTGAATCTGTACA TERM 2430 2192207 - 2192175 - R 100 -10 -5.4477 | gap 2, opp_overlap 2192175 2192182, overlap 2192176 AAACTTTTAAAAAAA GCCT--ATAGGGGGCG TGG CACCCCCTATTAAGGC TTTTGAATCTGTACA TERM 2431 2192205 - 2192176 - R 87 -10.1 -3.85235 | gap 1, opp_overlap 2192175 2192182, overlap 2192175 AACTTTTAAAAAAAG CCT-ATAGGGGGCG TGG CACCCCCTATTAAG GCTTTTGAATCTGTA TERM 2432 2192182 - 2192198 + r 74 -9.3 -3.09518 | opp_overlap 2192176 2192175, overlap 2192175 TAAAAAAAGCCTATA GGGGGCG TGG CACCCCC TATTAAGGCTTTTGA Cthe_1848 2194456 - 2192225 - | copper-translocating P-type ATPase TERM 2433 2193631 - 2193645 + g 70 -5.7 -4.36914 | TTCCTTCAATTATCC TTCCG TCCAC CGGAA TTTTCTCACCGGGCC Cthe_1849 2196062 - 2194563 - | heavy metal transport/detoxification protein Cthe_1850 2196607 - 2196116 - | hypothetical protein TERM 2434 2196714 - 2196749 + r 93 -10 -4.58685 | gap 1, opp_overlap 2196714 2196747, overlap 2196746 GAAAAAAATTAAAAA GCCTTAATC-CACATTT TTA AAATGTATGATTAAGGC TTTTTAAGCCAGTTT TERM 2435 2196749 - 2196714 - R 100 -12.2 -5.31158 | gap 1, opp_overlap 2196714 2196746, overlap 2196747 GAAAAAAATTAAAAA GCCTTAATC-CACATTT TTA AAATGTATGATTAAGGC TTTTTAAGCCAGTTT Cthe_1851 2197421 - 2196828 - | hypothetical protein TERM 2436 2197961 - 2197926 - R 100 -8.5 -5.55695 | gap 1, opp_overlap 2197926 2197924 2197923 TAACAATACAAAAAA GCCTGACTTTTAACTT TTTAC AAGTTACA-GTCAGGC TCCTTTCTTATTTGG TERM 2437 2197926 - 2197961 + r 74 -8.5 -3.22335 | gap 1, opp_overlap 2197926, overlap 2197924 2197923 TAACAATACAAAAAA GCCTGACTTTTAACTT TTTAC AAGTTACA-GTCAGGC TCCTTTCTTATTTGG TERM 2438 2198052 - 2198097 + r 100 -13.7 -3.54459 | opp_overlap 2198059 2198064, overlap 2198059 GGCTATGGCGCCGTA TTTGAAACTAAAGACTGGA AAATAACC TCCAGTCTTTAGTTTTGAA TTTGGAGCGGGTTAC TERM 2439 2198090 - 2198059 - R 100 -13.2 -3.59979 | opp_overlap 2198052 2198059, overlap 2198064 GCGCCGTATTTGAAA CTAAAGACTGGAAA ATAA CCTCCAGTCTTTAG TTTTGAATTTGGAGC TERM 2440 2198059 - 2198090 + r 100 -11.8 -4.35524 | opp_overlap 2198059 2198064, overlap 2198052 GCGCCGTATTTGAAA CTAAAGACTGGA AAATAACC TCCAGTCTTTAG TTTTGAATTTGGAGC TERM 2441 2198085 - 2198064 - R 74 -7.3 -4.07246 | opp_overlap 2198059 2198052, overlap 2198059 GTATTTGAAACTAAA GACTGGAAA ATAA CCTCCAGTC TTTAGTTTTGAATTT Cthe_1852 2199450 - 2198560 - | Hsp33 protein TERM 2442 2199611 - 2199632 + r 100 -14.5 -2.89039 | opp_overlap 2199604 2199611 ATTATAAATTGAAAA CCCCGGTAT TTCA ATACCGGGG TATATGGCCGTCCTT TERM 2443 2199632 - 2199611 - R 100 -14.5 -4.40173 | opp_overlap 2199611, overlap 2199604 ATTATAAATTGAAAA CCCCGGTAT TTCA ATACCGGGG TATATGGCCGTCCTT Cthe_1853 2199871 - 2199671 - | cold-shock DNA-binding protein family protein TERM 2444 2200002 - 2200018 + r 76 -9.5 -3.15861 | opp_overlap 2200001 2200000 AATTGTATAAAACTT TGACAAG CAG CTTGTCA TTCCTGGAACTCATA Cthe_1854 2200336 - 2200016 - | methylated-DNA--protein-cysteine methyltransferase Cthe_1855 2201038 - 2200340 - | methyltransferase type 11 TERM 2445 2200688 - 2200678 - G 73 -2.4 -5.22289 | opp_overlap 2200678 TATCAAATATAAAAA GCCC TCC GGGA TTTAAATAGTTCTTT TERM 2446 2201192 - 2201162 - R 100 -15.7 -4.61527 | AAAAGGCGTCAAAAA CGGGATGTATTTT TACCT AAAATACATCCCG CCGCAAAAGTCATTG Cthe_1856 2201426 - 2201253 - | small acid-soluble spore protein beta Cthe_1857 2202832 - 2201543 - | carboxyl-terminal protease TERM 2447 2201746 - 2201723 - G 83 -11 -3.66178 | TCTTGCAATGGTAAA CTTGAGGCCG GACC CGTCCTCAAG CGGCTCCACCGCCTG TERM 2448 2203003 - 2202972 - R 86 -9.6 -4.11216 | opp_overlap 2202976 2202977, overlap 2202977 TTTTTATTGTCAAAA CAAAACTCGTACCT TAAA AAGTACGAGCTTTA CGTTTCATTTACAGA TERM 2449 2202998 - 2202977 - R 100 -9.5 -5.08255 | opp_overlap 2202976 2202977, overlap 2202972 ATTGTCAAAACAAAA CTCGTACCT TAAA AAGTACGAG CTTTACGTTTCATTT Cthe_1858 2204174 - 2203047 - | peptidase M23B TERM 2450 2203450 - 2203466 + g 82 -6.5 -4.84311 | overlap 2203444 GTTCCACCGGCGTAG CTTCCGC TTT GCTGAAG TTTTCTTATCTGACC TERM 2451 2203998 - 2204012 + g 70 -2.8 -5.1166 | TTTTTTCTTTTCACT CTCAAT ATT ACTGAG TTTTTGCTTTTCCTC Cthe_1859 2205126 - 2204242 - | cell division protein FtsX Cthe_1860 2205802 - 2205095 - | cell division ATP-binding protein FtsE TERM 2452 2205706 - 2205680 - GR 87 -11.6 -3.03701 | TTTGAGCAAAGTAGA TTTGCCGGAGCC GCT GGGTCCGACAAA AAATGCAAATTCGCC TERM 2453 2205827 - 2205842 + r 81 -10.4 -2.95994 | overlap 2205825 CTTAAAGTCAATCGT CCGGAC TTTG GTCCGG TGCATTTTTCTTTCG Cthe_1861 2207062 - 2205977 - | CdaR family transcriptional regulator TERM 2454 2207193 - 2207245 + r 95 -10.5 -4.59212 | gap 1, opp_overlap 2207195 2207207, overlap 2207195 2207207 TTTTATTATACACAA AAT-AAAATAAAAAAGGAAAGATT CAAATA AATCTTTCCTTTTTTATTTTTATA TTTATTTCATTAGTT TERM 2455 2207242 - 2207195 - R 100 -15.4 -4.62984 | opp_overlap 2207195 2207193 2207207, overlap 2207207 TTATTATACACAAAA TAAAATAAAAAAGGAAAGATTC AAAT AAATCTTTCCTTTTTTATTTTT ATATTTATTTCATTA TERM 2456 2207195 - 2207243 + r 100 -13.1 -3.88884 | gap 1, opp_overlap 2207195 2207207, overlap 2207193 2207207 TTATTATACACAAAA T-AAAATAAAAAAGGAAAGATT CAAATA AATCTTTCCTTTTTTATTTTTA TATTTATTTCATTAG TERM 2457 2207230 - 2207207 - R 100 -9 -5.95449 | opp_overlap 2207207 2207195 2207193, overlap 2207195 AAATAAAATAAAAAA GGAAAGATTC AAAT AAATCTTTCC TTTTTTATTTTTATA TERM 2458 2207207 - 2207230 + r 100 -8.3 -5.98675 | opp_overlap 2207195 2207207, overlap 2207195 2207193 AAATAAAATAAAAAA GGAAAGATT CAAATA AATCTTTCC TTTTTTATTTTTATA Cthe_1862 2208367 - 2207255 - | ABC transporter related protein Cthe_1863 2208749 - 2209789 + | N-acetyl-gamma-glutamyl-phosphate reductase TERM 2459 2210117 - 2210101 - g 74 -6.5 -4.44284 | overlap 2210075 AATTCAACATCAAAA GCCGGTT TAT AAACGGC CTGAGACTTACCGAC Cthe_1864 2209854 - 2210768 + | acetylglutamate kinase TERM 2460 2211577 - 2211567 - g 76 -3.2 -5.27779 | TTGAAGATGAAAAAA GCAA ACT TCGC GAAGAATACATCAAT Cthe_1865 2210951 - 2211613 + | type IV pilus assembly PilZ TERM 2461 2213088 - 2213078 - g 71 -4 -4.99134 | opp_overlap 2213083, overlap 2213084 AGTGGAAATCAAAAA CAAA TGC TTTG AAAAAGGCTATTTGA Cthe_1866 2212017 - 2213219 + | acetylornithine aminotransferase TERM 2462 2214172 - 2214162 - g 72 -3.2 -5.1287 | CTTATAGGCAAAAAA CCAA TGC TCGG AATAGGATTGGGCCA Cthe_1867 2213439 - 2214503 + | carbamoyl-phosphate synthase small subunit Cthe_1868 2214537 - 2217740 + | carbamoyl-phosphate synthase large subunit Cthe_1869 2217775 - 2218698 + | ornithine carbamoyltransferase Cthe_1870 2218711 - 2219187 + | GCN5-related N-acetyltransferase TERM 2463 2219339 - 2219375 + T 78 -5.9 -4.87328 | opp_overlap 2219335 2219339 AATAAAATAAATCAA TCCTTTGTAATCCACTT ATC ATGCAGGTTACAAAGGA TTTTATCTTTCTATC TERM 2464 2219375 - 2219339 - T 77 -8.1 -3.85719 | opp_overlap 2219339, overlap 2219335 AATAAAATAAATCAA TCCTTTGTAATCCACTT ATC ATGCAGGTTACAAAGGA TTTTATCTTTCTATC TERM 2465 2220181 - 2220171 - T 70 -4 -5.03945 | opp_overlap 2220171, overlap 2220165 CAATAAGCACAAAAA TATG AAT CATA TTTTTCATACAAAAT Cthe_1871 2222282 - 2220405 - | Tn7-like transposition protein D Cthe_1872 2223943 - 2222288 - | Tn7-like transposition protein C Cthe_1873 2225386 - 2224043 - | HMG-I and HMG-Y, DNA-binding TERM 2466 2225157 - 2225145 - G 82 -6.3 -4.9218 | TACTGACTACAAAAA GAAAC TTT GTTTC CAGCAGTGTTTGCAA TERM 2467 2225440 - 2225424 - R 71 -7.9 -3.53012 | opp_overlap 2225423 2225424 TTCTTCGGGCTGAAA CGGGAGG AAA CCTCTCG CTTGATGTTGCGTTC TERM 2468 2225424 - 2225440 + r 77 -10.1 -2.63236 | opp_overlap 2225424, overlap 2225423 TTCTTCGGGCTGAAA CGGGAGG AAA CCTCTCG CTTGATGTTGCGTTC TERM 2469 2225592 - 2225573 - R 83 -8 -4.26188 | opp_overlap 2225576, overlap 2225590 TTTATAGATTCAAAA GAATTTCT GATA AGAAATTC TTACAAAAGAAAAAT TERM 2470 2225636 - 2225677 + r 73 -8.2 -3.49777 | opp_overlap 2225632 2225637 2225639, overlap 2225641 TGCGTATAAAATATT ACAGGGGGGTTCA-GGAAAC CAGA GTTTCCCTGAACCCCT-TGA TTATACTATATACGC TERM 2471 2225676 - 2225637 - R 83 -10.8 -2.98387 | gap 1, opp_overlap 2225636 2225641, overlap 2225632 2225639 GCGTATAAAATATTA CAGGGGGGTTCAGGAAACC AGA GTTTCCCTGAACCCCT-TG ATTATACTATATACG TERM 2472 2225675 - 2225639 - R 81 -10.1 -3.03972 | opp_overlap 2225636 2225641, overlap 2225637 2225632 GTATAAAATATTACA GGGGGGTTCAGGAAACC AGA GTTTCCCTGAACCCCTT GATTATACTATATAC TERM 2473 2225641 - 2225673 + r 100 -15.8 -3.49182 | gap 1, opp_overlap 2225639 2225637 2225632, overlap 2225636 ATAAAATATTACAGG GGGGTTCA-GGAAAC CAGA GTTTCCCTGAACCCC TTGATTATACTATAT Cthe_1874 2226906 - 2225683 - | transposase, mutator type TERM 2474 2226417 - 2226405 - G 73 -7.7 -3.90586 | opp_overlap 2226404 2226405 ATACTATCGGATAAA CCTCT CCC AGAGG CCTTTTCTGCCACTC Cthe_1875 2227729 - 2226953 - | HMG-I and HMG-Y, DNA-binding TERM 2475 2227221 - 2227234 + g 73 -6.7 -4.17491 | ATATTCGCATGCTTT CTTGG TCGC CCAAG TTTTACGCCTTTGGT Cthe_1876 2228570 - 2227716 - | Tn7-like transposition protein A Cthe_1877 2230057 - 2229188 - | hypothetical protein Cthe_1878 2230848 - 2230054 - | hypothetical protein Cthe_1879 2231236 - 2230862 - | hypothetical protein TERM 2476 2231287 - 2231311 + H 100 -11.7 -4.2361 | opp_overlap 2231286 2231285 2231283 GTAAAAAAAGATACG GTTTGTAAAAA ATA TTTTTACAAAC TTTTGAGGTTATCTT Cthe_1880 2231419 - 2231712 + | transposase IS3/IS911 Cthe_1881 2231735 - 2232571 + | integrase catalytic subunit TERM 2477 2232591 - 2232577 - T 86 -11.4 -2.89 | overlap 2232574 AGTTGTATAGAATTA TGGGGC TCC GCCCCA AACCCCGTCCTCACC TERM 2478 2232638 - 2232615 - T 82 -11 -2.53876 | opp_overlap 2232605 CCTCACCGGAAGGCA GCCGGTCTGT CATA ACAGACCGGA AAGCAAAAGGATATA TERM 2479 2232709 - 2232662 - T 70 -7.1 -3.60234 | gap 1 GGATATATGTCCAAA GGATGTCAAGGGTCAAGATGAA CTCGC TTACGCTCG-CCCTTGACATCC TCCAACAGAGTGCAC Cthe_1882 2233312 - 2232851 - | hypothetical protein Cthe_1883 2236258 - 2234192 - | SMC protein-like protein TERM 2480 2235288 - 2235278 - G 70 -2.6 -5.01823 | ACAATAATAAGAAAA TAAT GAT ATTA CAACTGCACTCTGAA Cthe_1884 2237987 - 2236698 - | transposase IS116/IS110/IS902 TERM 2481 2237590 - 2237614 + g 75 -10.1 -3.10098 | opp_overlap 2237594, overlap 2237587 2237594 AGGCTTCGCAGACAT TCAATATCCTC GTC GGGGATATTGG TAGTTTTAAGCTCCT TERM 2482 2238535 - 2238520 - g 72 -4.6 -4.70046 | overlap 2238521 TAGAAAATGATAAAA GCGCAG GAAC CTGCGA AACTTACTGCACTAA TERM 2483 2238867 - 2238881 + G 78 -2.9 -5.51353 | TATGGCAGAGAGGTA GAAAA AGTCA TTTTC TTTTTGTTATTTTTA Cthe_1885 2238441 - 2239013 + | phage integrase-like SAM-like TERM 2484 2239107 - 2239154 + T 70 -7.1 -3.60234 | gap 1 GTGCACTCTGTTGGA GGATGTCAAGGG-CGAGCGTAA GCGAG TTCATCTTGACCCTTGACATCC TTTGGACATATATCC TERM 2485 2239178 - 2239201 + T 82 -11 -2.53876 | opp_overlap 2239197 TATATCCTTTTGCTT TCCGGTCTGT TATG ACAGACCGGC TGCCTTCCGGTGAGG TERM 2486 2239225 - 2239239 + T 86 -11.4 -2.89 | overlap 2239223 GGTGAGGACGGGGTT TGGGGC GGA GCCCCA TAATTCTATACAACT Cthe_1886 2240081 - 2239245 - | integrase catalytic subunit Cthe_1887 2240397 - 2240104 - | transposase IS3/IS911 TERM 2487 2240484 - 2240500 + r 70 -8.1 -3.05463 | TGCTACATGCAGGCA GGTAATT AAT AATTACC TTGAGTACCGGAAAT TERM 2488 2241250 - 2241260 + r 77 -3.2 -5.59655 | GGTTACATCAGTATG TGTG AGT CACG TTTTTTATTGGTTTC TERM 2489 2241346 - 2241303 - R 85 -8.2 -4.46073 | opp_overlap 2241306, overlap 2241306 2241312 TTGGAATATAATAAA TATGTAAAAGAGCCTCCACT TTTT AAAGGAGGCTCTTACACTTA TTCTACCAGTGCAGA TERM 2490 2241343 - 2241306 - R 79 -9.9 -2.88802 | opp_overlap 2241306, overlap 2241303 2241312 GAATATAATAAATAT GTAAAAGAGCCTCCACT TTTT AAAGGAGGCTCTTACAC TTATTCTACCAGTGC TERM 2491 2241337 - 2241312 - R 90 -9.7 -4.34811 | opp_overlap 2241306, overlap 2241306 2241303 AATAAATATGTAAAA GAGCCTCCACT TTTT AAAGGAGGCTC TTACACTTATTCTAC Cthe_1888 2242927 - 2241344 - | hypothetical protein TERM 2492 2242151 - 2242168 + g 85 -11.3 -3.3517 | opp_overlap 2242149, overlap 2242149 2242158 AAGTATCAAATCAGG CCTGCCT CTAT AGGCAGG TGTTCTGTCATAGGT TERM 2493 2243892 - 2243917 + G 74 -6.1 -4.37092 | overlap 2243893 AAGATTTTAACGGGA AGTGCATGGCA AAGA TGCCGTGTACA TTTTATGAGAAACGT TERM 2494 2243893 - 2243916 + G 73 -9.6 -3.21934 | overlap 2243892 AGATTTTAACGGGAA GTGCATGGCA AAGA TGCCGTGTAC ATTTTATGAGAAACG Cthe_1889 2243154 - 2244374 + | transposase, mutator type TERM 2495 2244702 - 2244732 + T 90 -8.4 -4.74801 | opp_overlap 2244702 AAAATATATTAAAAA TGGCATGAACATCA AAA TAATGTTCATACCA TTTTTAATCAAATTG TERM 2496 2244732 - 2244702 - T 100 -12.8 -4.91573 | opp_overlap 2244702 AAAATATATTAAAAA TGGCATGAACATCA AAA TAATGTTCATACCA TTTTTAATCAAATTG Cthe_1890 2246891 - 2244759 - | cellulosome enzyme, dockerin type I TERM 2497 2244871 - 2244857 - G 75 -10 -2.954 | opp_overlap 2244857, overlap 2244856 2244859 TACGCAGCCATAAAG CAGGTG CTA CACCTG TTAAGTTTTTGCACC TERM 2498 2244857 - 2244871 + g 79 -10 -3.45031 | opp_overlap 2244856 2244857 2244859 TACGCAGCCATAAAG CAGGTG CTA CACCTG TTAAGTTTTTGCACC TERM 2499 2247301 - 2247314 + r 74 -3.9 -5.16472 | opp_overlap 2247301 AAAAAGTACAATAAT TACTT ACAA AAGTA TTTTTTCGGCTTTTT Cthe_1891 2247751 - 2247464 - | hypothetical protein Cthe_1893 2248818 - 2248150 - | hypothetical protein Cthe_1894 2249277 - 2248834 - | hypothetical protein Cthe_1895 2249611 - 2249264 - | PadR family transcriptional regulator TERM 2500 2249338 - 2249354 + g 71 -3.7 -4.87318 | TAATCCATTCTTTTT GTTTTTC CCG GAGAAGC TTTTTACCTTTTGAA TERM 2501 2249624 - 2249646 + r 82 -9.4 -3.60792 | opp_overlap 2249613 2249609 2249619 2249630 2249632 2249634, overlap 2249611 2249628 2249630 2249632 2249634 CATATATAGACCTCC TATATATAGA TTA TCTATATATA TTATATATAGATAAT TERM 2502 2249628 - 2249666 + r 100 -18 -2.91264 | opp_overlap 2249609 2249619 2249630 2249632 2249634 2249650, overlap 2249611 2249624 2249630 2249632 2249634 TATAGACCTCCTATA TATAGATTATCTATATAT ATT ATATATAGATAATCTATA TATGTCAATAACAAA TERM 2503 2249664 - 2249630 - R 100 -16.2 -2.88249 | opp_overlap 2249624 2249628 2249630 2249632 2249634, overlap 2249609 2249619 2249632 2249634 2249650 TAGACCTCCTATATA TAGATTATCTATATAT ATT ATATATAGATAATCTA TATATGTCAATAACA TERM 2504 2249630 - 2249664 + r 100 -16.2 -3.0094 | opp_overlap 2249609 2249630 2249619 2249632 2249634 2249650, overlap 2249624 2249628 2249632 2249634 TAGACCTCCTATATA TAGATTATCTATATAT ATT ATATATAGATAATCTA TATATGTCAATAACA TERM 2505 2249662 - 2249632 - R 100 -14.4 -2.9914 | opp_overlap 2249624 2249632 2249630 2249628 2249634, overlap 2249630 2249619 2249634 2249650 GACCTCCTATATATA GATTATCTATATAT ATT ATATATAGATAATC TATATATGTCAATAA TERM 2506 2249632 - 2249662 + r 100 -14.4 -3.05993 | opp_overlap 2249630 2249619 2249632 2249634 2249650, overlap 2249624 2249630 2249628 2249634 GACCTCCTATATATA GATTATCTATATAT ATT ATATATAGATAATC TATATATGTCAATAA TERM 2507 2249634 - 2249660 + r 84 -11.2 -3.08465 | opp_overlap 2249632 2249630 2249619 2249634 2249650, overlap 2249624 2249632 2249630 2249628 CCTCCTATATATAGA TTATCTATATAT ATT ATATATAGATAA TCTATATATGTCAAT TERM 2508 2249660 - 2249634 - R 84 -11.2 -3.05022 | opp_overlap 2249624 2249634 2249632 2249630 2249628, overlap 2249632 2249630 2249619 2249650 CCTCCTATATATAGA TTATCTATATAT ATT ATATATAGATAA TCTATATATGTCAAT Cthe_1896 2250515 - 2249754 - | metallophosphoesterase Cthe_1897 2250938 - 2250612 - | hypothetical protein Cthe_1898 2251571 - 2251092 - | hypothetical protein Cthe_1899 2252471 - 2251602 - | M15B family D-Ala-D-Ala carboxypeptidase VanY TERM 2509 2251771 - 2251758 - G 81 -6.7 -4.67651 | opp_overlap 2251757 ATATCTCAAAATAAA CCCAT ATTT ATGGG CATTCTCCATAAGCC TERM 2510 2254060 - 2254072 + G 73 -7.7 -3.90586 | opp_overlap 2254059 2254060 GAGTGGCAGAAAAGG CCTCT GGG AGAGG TTTATCCGATAGTAT Cthe_1901 2253571 - 2254794 + | transposase, mutator type TERM 2511 2254841 - 2254800 - T 73 -8.2 -3.49777 | opp_overlap 2254795 2254801 2254802, overlap 2254804 GCGTATATAGTATAA TCA-AGGGGTTCAGGGAAAC TCTG GTTTCC-TGAACCCCCCTGT AATATTTTATACGCA TERM 2512 2254801 - 2254840 + T 83 -10.8 -2.98387 | gap 1, opp_overlap 2254800 2254804, overlap 2254795 2254802 CGTATATAGTATAAT CA-AGGGGTTCAGGGAAAC TCT GGTTTCCTGAACCCCCCTG TAATATTTTATACGC TERM 2513 2254802 - 2254838 + T 81 -10.1 -3.03972 | opp_overlap 2254800 2254804, overlap 2254801 2254795 GTATATAGTATAATC AAGGGGTTCAGGGAAAC TCT GGTTTCCTGAACCCCCC TGTAATATTTTATAC TERM 2514 2254836 - 2254804 - T 100 -15.8 -3.49182 | gap 1, opp_overlap 2254802 2254801 2254795, overlap 2254800 ATATAGTATAATCAA GGGGTTCAGGGAAAC TCTG GTTTCC-TGAACCCC CCTGTAATATTTTAT TERM 2515 2254885 - 2254904 + T 83 -8 -4.26188 | opp_overlap 2254888, overlap 2254874 ATTTTTCTTTTGTAA GAATTTCT TATC AGAAATTC TTTTGAATCTATAAA Cthe_1902 2255992 - 2255114 - | pyridoxal-5'-phosphate-dependent enzyme, beta subunit TERM 2516 2255634 - 2255648 + g 95 -2.8 -6.26417 | TCCAAAACCTGGCTT GCTG TGGACAT CAGC TTTTTTTTTATCCTA Cthe_1903 2256775 - 2256038 - | polysaccharide deacetylase TERM 2517 2256386 - 2256398 + g 100 -4.9 -5.86332 | CTTCAGAAAAGTCAT GATTT TAG AAATC TTTTTTTTGCCTTCC Cthe_1904 2262332 - 2256831 - | amino acid adenylation domain-containing protein TERM 2518 2259027 - 2259038 + g 81 -3 -5.63645 | opp_overlap 2259022 2259027 ATAAGGAATACAAAT CAAA TTCA TTTG TTTTTTCTCTTTTGA TERM 2519 2260598 - 2260610 + g 77 -6.3 -4.52589 | AAATAGCTGCAATTC TATCC GAA GGATA TTTTATATCAAGCGG Cthe_1905 2263695 - 2262463 - | glycosyl transferase family protein TERM 2520 2263379 - 2263398 + g 76 -4.4 -5.15969 | gap 1, overlap 2263378 2263382 AAGACAGTATCCGTT GT-ATTGCA ATG TGCAATCAC TTTTTTAAATTCACG Cthe_1906 2264937 - 2263726 - | glycosyl transferase family protein TERM 2521 2264055 - 2264040 - G 76 -9 -3.63515 | CTCCATGGTGAATAA CCGCAT CCAC ATGCGG CAACAAGCTTCTAAT Cthe_1907 2266920 - 2265043 - | amino acid adenylation domain-containing protein TERM 2522 2267238 - 2267197 - R 84 -3.7 -5.71712 | GTTGACATAAAAAAA CTCCTCCTTGGATATTATT TTGT AATTCTTGCCAAGAAGGAG ACTTTTCATTCTCTT Cthe_1908 2270235 - 2267347 - | copper amine oxidase-like protein Cthe_1909 2271700 - 2270228 - | copper amine oxidase-like protein Cthe_1910 2272976 - 2271729 - | hypothetical protein TERM 2523 2273289 - 2273250 - R 100 -12.2 -4.23045 | GAATTATTTAAGAAA GGCCCCGCATATATCC ATTAATCA GGTTATACACGGGGCC ATAAAACCTCCCTAA Cthe_1911 2277183 - 2273311 - | carbohydrate-binding family 6 protein TERM 2524 2277429 - 2277372 - R 74 -2.9 -5.38951 | gap 1, opp_overlap 2277384 2277388, overlap 2277360 2277384 2277388 AAGGTATACAAAAAA GTATACAATAAAGAAAGGATATCCGCCC TAT AAACGGTTATCCTTTCTCT-TCGGATAA AAAAGCTTCTTAAAA TERM 2525 2277418 - 2277384 - R 100 -10.8 -4.43624 | opp_overlap 2277384 2277388, overlap 2277372 2277388 AAAGTATACAATAAA GAAAGGATATCCGCCC TAT AAACGGTTATCCTTTC TCTTCGGATAAAAAA TERM 2526 2277384 - 2277418 + r 72 -8.7 -3.05844 | opp_overlap 2277372 2277384 2277388, overlap 2277388 AAAGTATACAATAAA GAAAGGATATCCG CCCTATAAA CGGTTATCCTTTC TCTTCGGATAAAAAA TERM 2527 2277414 - 2277388 - R 78 -5.8 -4.76087 | opp_overlap 2277388 2277384, overlap 2277384 2277372 TATACAATAAAGAAA GGATATCCGCCC TAT AAACGGTTATCC TTTCTCTTCGGATAA Cthe_1912 2279077 - 2277470 - | copper amine oxidase-like protein TERM 2528 2278788 - 2278798 + g 79 -5.4 -4.91977 | ACATTTCCGTCCATG GCAA GCG TTGC TTTTGTCTTTTCATC TERM 2529 2279282 - 2279298 + r 76 -3.7 -5.47431 | overlap 2279285 CCCAATTTTAAAGTT GTTGAAA GCT TTTCTAC TTTTTTATATGTTCA Cthe_1913 2280092 - 2279295 - | hypothetical protein TERM 2530 2279527 - 2279510 - G 70 -3.5 -4.8667 | TATATCTTACAAAAA TATCCTT TCCA AAGAATA TGAAGAAATTCAGTA Cthe_1914 2281477 - 2280197 - | TPR repeat-containing protein TERM 2531 2281150 - 2281160 + g 73 -5.4 -4.63184 | ATACGCCAAATACTT CAAC TCC GTTG TTTTTAAGATCCCTT Cthe_1915 2282969 - 2281578 - | periplasmic sensor signal transduction histidine kinase TERM 2532 2281784 - 2281800 + g 73 -2.3 -5.29782 | TGTCCTCTATTCTTA TCAAAAC ACC GTTTTCA TTTTTTCTGCCTATA Cthe_1916 2283657 - 2282971 - | two component transcriptional regulator Cthe_1917 2287828 - 2285111 - | ATPase, P-type (transporting), HAD superfamily, subfamily IC Cthe_1918 2289441 - 2287981 - | arginine decarboxylase TERM 2533 2289247 - 2289237 - G 75 -8.2 -4.09117 | opp_overlap 2289237 CCGACTCATAAATAA CCCC CGT GGGG TTGTTGGCAAAATCC TERM 2534 2289237 - 2289247 + g 70 -8.2 -3.62046 | opp_overlap 2289237 CCGACTCATAAATAA CCCC CGT GGGG TTGTTGGCAAAATCC Cthe_1919 2290272 - 2289574 - | MgtC/SapB transporter TERM 2535 2290599 - 2290610 + r 83 -4.4 -5.63236 | GGAATATTTTATTCA TTGC GCTC GCAA TTTTTATTTTTGACT Cthe_1920 2291277 - 2290579 - | stage II sporulation protein R TERM 2536 2291008 - 2291020 + g 73 -7.7 -3.83717 | TTCTATTATTCTTTT TGTGG TTT CCACA TCTTTTACATTTTTA TERM 2537 2291567 - 2291513 - H 100 -11.8 -4.58395 | opp_overlap 2291547, overlap 2291545 2291565 GGCATTTTTCAAAAA GTACTTTACCTGTCGTAGTAAT TGTGATAAAAT ATTACTGCGACAGACAAAGTAC GTCTGACGTAATAAT TERM 2538 2291583 - 2291545 - H 74 -6.1 -4.4017 | opp_overlap 2291547, overlap 2291513 2291565 GTAATTGTGATAAAA TATTACTGCGACAGACA AAGTA CGTCTGACGTAATAATA TTAAAGGAGGTGTTA Cthe_1921 2291601 - 2291945 + | PadR family transcriptional regulator Cthe_1922 2291932 - 2292900 + | hypothetical protein TERM 2539 2293007 - 2292964 - T 100 -12.7 -3.3579 | gap 1, opp_overlap 2292966 2292972, overlap 2292966 2292972 AAATTGCGTCAAATA CATTAAAATCGGCTG-TCCG ATTGA CGGAACAGCCGATTTTTATA TCATTCTTATCATTA TERM 2540 2293005 - 2292966 - T 100 -13.1 -3.24411 | gap 1, opp_overlap 2292966 2292972, overlap 2292964 2292972 ATTGCGTCAAATACA TTAAAATCGGCTG-TCCG ATTGA CGGAACAGCCGATTTTTA TATCATTCTTATCAT TERM 2541 2292966 - 2293005 + T 100 -13.1 -3.04845 | gap 1, opp_overlap 2292966 2292964 2292972, overlap 2292972 ATTGCGTCAAATACA TTAAAATCGGCTG-TCCG ATTGA CGGAACAGCCGATTTTTA TATCATTCTTATCAT TERM 2542 2292999 - 2292972 - T 100 -12.1 -4.46493 | gap 1, opp_overlap 2292966 2292972, overlap 2292966 2292964 TCAAATACATTAAAA TCGGCTG-TCCG ATTGA CGGAACAGCCGA TTTTTATATCATTCT TERM 2543 2292972 - 2292999 + T 100 -12.1 -5.05079 | gap 1, opp_overlap 2292972 2292966 2292964, overlap 2292966 TCAAATACATTAAAA TCGGCTG-TCCG ATTGA CGGAACAGCCGA TTTTTATATCATTCT Cthe_1923 2294648 - 2293020 - | CTP synthetase TERM 2544 2294218 - 2294242 + g 72 -3.6 -5.04356 | gap 1 TCGCCAACAGTACCG CCGATTTCGGT AATC ACC-ACATCGG TTTTTCCTTCTTTGC TERM 2545 2294707 - 2294671 - R 76 -6.5 -4.7254 | opp_overlap 2294671 2294676, overlap 2294674 2294675 2294676 ATCCTCCATTAAAAA CAACTTCAGCCGGGAAA GCA CTTCACGGCTGATATGG TTATTGCTGAAAAAT TERM 2546 2294704 - 2294674 - R 78 -6.8 -4.47707 | opp_overlap 2294671 2294676, overlap 2294671 2294675 2294676 CTCCATTAAAAACAA CTTCAGCCGGGAAA GCA CTTCACGGCTGATA TGGTTATTGCTGAAA TERM 2547 2294703 - 2294675 - R 71 -8.1 -3.27901 | opp_overlap 2294671 2294676, overlap 2294674 2294671 2294676 TCCATTAAAAACAAC TTCAGCCGGGAAA GCA CTTCACGGCTGAT ATGGTTATTGCTGAA TERM 2548 2294676 - 2294702 + r 84 -10.9 -3.03203 | opp_overlap 2294676 2294675 2294674 2294671, overlap 2294671 CCATTAAAAACAACT TCAGCCGGGAA AGCAC TTCACGGCTGA TATGGTTATTGCTGA TERM 2549 2294702 - 2294676 - R 86 -11.6 -2.56018 | opp_overlap 2294671 2294676, overlap 2294675 2294674 2294671 CCATTAAAAACAACT TCAGCCGGGAAA GCA CTTCACGGCTGA TATGGTTATTGCTGA Cthe_1925 2297514 - 2296981 - | hypothetical protein Cthe_1926 2298928 - 2297702 - | hypothetical protein Cthe_1927 2300174 - 2299359 - | hypothetical protein Cthe_1928 2301255 - 2300254 - | hypothetical protein Cthe_1929 2301884 - 2301276 - | hypothetical protein TERM 2550 2302175 - 2302138 - R 88 -6.5 -5.46657 | gap 2, opp_overlap 2302138 2302168 TAGTTGAATAAAAAA GAGGCCTGAA-AC-GCT CAACAC AACAGTCTTCAGGCCTC TTGTATTATCTTTGA Cthe_1930 2303784 - 2302267 - | carboxyl-terminal protease TERM 2551 2303371 - 2303385 + g 85 -4.2 -5.64274 | TTTACCGTCAACCTG GGCTAT AAC ATCGCC TTTTTTTATCCCTGC Cthe_1931 2305423 - 2303858 - | S-layer-like domain-containing protein Cthe_1932 2308456 - 2305451 - | S-layer-like domain-containing protein TERM 2552 2308540 - 2308517 - R 91 -5.3 -5.85011 | opp_overlap 2308517 TAAAAATTAAAAAAA TTAGCCGTT CTTTAT ATCGGCTAA TTTTAGGACATTTAT Cthe_1933 2309293 - 2308658 - | Zn-dependent hydrolase of the beta-lactamase fold Cthe_1934 2310058 - 2309381 - | abortive infection protein TERM 2553 2310107 - 2310097 - R 75 -2.6 -5.61596 | ATGTTTATAAAAAAA TTAT ATC ATAA CGTACATGTACATAA TERM 2554 2310217 - 2310172 - R 100 -14.3 -5.44721 | gap 1, opp_overlap 2310175 2310176, overlap 2310176 ATTATTGTAAAAAAA CAAA-CTCCGGCCAAATTATTA TCA TAATTATCCGGCCGGAGCTTTG CAAAACAATTCCATA TERM 2555 2310176 - 2310212 + r 82 -10.9 -2.72043 | opp_overlap 2310172 2310176, overlap 2310175 TTGTAAAAAAACAAA CTCCGGCCAAATTATTA TCA TAATTATCCGGCCGGAG CTTTGCAAAACAATT TERM 2556 2310212 - 2310176 - R 100 -15.3 -5.20328 | opp_overlap 2310176 2310175, overlap 2310172 TTGTAAAAAAACAAA CTCCGGCCAAATTATTA TCA TAATTATCCGGCCGGAG CTTTGCAAAACAATT argS 2311934 - 2310240 - | arginyl-tRNA synthetase TERM 2557 2311010 - 2311030 + gr 74 -9.7 -2.71712 | overlap 2311009 2311022 CAATTACCTCATCTT TTTCCGCTC CCA GGGCGGAAG CTTTAAACCAGACAG Cthe_1936 2312364 - 2311897 - | hypothetical protein Cthe_1937 2313229 - 2312423 - | glutamate racemase Cthe_1938 2314424 - 2313294 - | D-alanine--D-alanine ligase TERM 2558 2314122 - 2314142 + g 71 -9.7 -2.79912 | overlap 2314119 GCTTTTTTCGTTCTC TGAGGCCTT TTC AAGGCCGCA TGCGTTATTTTTGCA TERM 2559 2314889 - 2314854 - R 77 -9.9 -2.62515 | overlap 2314857 AACGCCGGTATATTA TAAGGCCTTCCTG CTTTTAGATT CAGGAAGACCTTA CAAAACAGGCAACTC Cthe_1939 2316283 - 2314949 - | magnesium transporter Cthe_1940 2317196 - 2316456 - | RDD domain-containing protein TERM 2560 2316768 - 2316780 + g 74 -6.3 -4.36089 | CGTTCTTGCAGCTTT GTCAT GCA ATGAC TGTTTTTTTCCACTG Cthe_1941 2317345 - 2317593 + | FmdB family regulatory protein TERM 2561 2317576 - 2317603 + T 75 -8.4 -3.60475 | opp_overlap 2317570 ATTCATAAATGCGGA GGATGCTGCAGT CATT AATGCAGCACCC TTTCACATCGGCATT Cthe_1942 2318531 - 2317632 - | hypothetical protein Cthe_1943 2319305 - 2318622 - | deoxyribose-phosphate aldolase TERM 2562 2319467 - 2319440 - R 87 -4.3 -5.84432 | GAGAATACAAAAAAA TTGACATTATA TAAAGC TACAATGCCAA TATTTTACCAACATA Cthe_1944 2320148 - 2319600 - | hypothetical protein TERM 2563 2319998 - 2320026 + g 75 -9.7 -3.32993 | opp_overlap 2319979 2320000 2320013 TGCCCACATGGGAAT CAGTTCCTATGGA AAT TCTATAAGAACTG TTGGTGTCTGCCTCG TERM 2564 2320226 - 2320206 - R 100 -11.1 -5.86976 | TGATAAAATAAAAAA CCCGGTGAC AAA GTCACAGGG TCACAGACATAGTAT Cthe_1945 2321312 - 2320419 - | thioredoxin-disulfide reductase TERM 2565 2320540 - 2320519 - G 88 -11.5 -3.53811 | GCTATCTGCTTGAAA CCGCCGGTG CAGT CACCGGCCG CAAACAGCCCTTCAA TERM 2566 2320687 - 2320699 + g 79 -4.9 -5.00884 | TCCTCGCTGGTACCG TCTTT GAA AAAGA TTTTTTGGAGAAACT Cthe_1946 2322649 - 2321366 - | FAD-dependent pyridine nucleotide-disulphide oxidoreductase Cthe_1947 2323282 - 2322686 - | redoxin Cthe_1948 2324012 - 2323344 - | cytochrome c biogenesis protein, transmembrane region TERM 2567 2323459 - 2323435 - G 74 -6.5 -4.4009 | TTTGACTTTATAAAA TTGAAAGCCTC CCT GATACTTTCAA AAATCATGGCCGAAA Cthe_1949 2324596 - 2324315 - | hypothetical protein TERM 2568 2324811 - 2324801 - g 89 -6.8 -5.186 | CAAAATAGATAAAAA CGAG CTC CTCG AAAAAATAAATGAAT Cthe_1950 2324655 - 2324978 + | hypothetical protein TERM 2569 2325167 - 2325117 - g 100 -13.4 -5.27477 | opp_overlap 2325127 ACGGCAACGAAAAAA TGTCCGAAAATCTTTCGAGCCTGA TTT CCATGCTCGCAAAATCTTCGGGCA ATGACAAGCCCGCCC Cthe_1951 2325053 - 2325514 + | hypothetical protein Cthe_1952 2325528 - 2325902 + | hypothetical protein Cthe_1953 2326192 - 2326896 + | cell wall hydrolase, SleB Cthe_1954 2327814 - 2326951 - | hypothetical protein Cthe_1955 2330055 - 2327899 - | RNA binding S1 TERM 2570 2328841 - 2328826 - G 70 -9 -3.12069 | overlap 2328825 CGAAGCGGAATAAAC CGAAGC TCCC GCTTCG CTTACCACCATATAG TERM 2571 2329736 - 2329748 + g 70 -9.1 -3.10895 | CTGGTTCTTCTTTTT GGCCT GAA AGGCC TGTATATATCTTCAA TERM 2572 2330147 - 2330161 + r 70 -4.4 -4.89063 | opp_overlap 2330149 CCGTATTTTTGCAAG TATATT AAA AATATA TTTCTTTTTCCCTCA TERM 2573 2330293 - 2330273 - R 79 -4.8 -5.2197 | gap 1, opp_overlap 2330273 CATAAAAATTAAAAA CCGGATTTA AATT TAAA-CCGG TTTGAAAAGAAATAT Cthe_1956 2331268 - 2330336 - | tagatose-6-phosphate kinase Cthe_1957 2332645 - 2331305 - | extracellular solute-binding protein uvsE 2334154 - 2333189 - | putative UV damage endonuclease Cthe_1959 2334971 - 2334237 - | methyltransferase type 11 TERM 2574 2335290 - 2335268 - R 100 -10.6 -5.34055 | opp_overlap 2335266 ACAAACATGAAAAAA GAGATACCTC CAA GTGGTATCTC CCGTTTTACAAAGTC Cthe_1960 2336421 - 2335339 - | peptidoglycan binding domain-containing protein Cthe_1961 2336838 - 2339288 + | nucleotidyl transferase TERM 2575 2339395 - 2339417 + G 95 -13.5 -3.5936 | opp_overlap 2339368 2339389 2339412, overlap 2339398 TAAGAGAAACTTTTC CAAGGCTCC CCAAC GGAGCCTTG TTTAAAGCCTTTCGC TERM 2576 2339398 - 2339414 + G 83 -9.4 -3.92832 | opp_overlap 2339389 2339412, overlap 2339395 GAGAAACTTTTCCAA GGCTCC CCAAC GGAGCC TTGTTTAAAGCCTTT TERM 2577 2339631 - 2339619 - g 81 -2.6 -5.64421 | ATCGTAAACAAAAAA CAGG GCATA CCCG TGCATCCCGACAGGA TERM 2578 2339751 - 2339769 + G 71 -7.4 -3.84406 | CTTTGTCACAGGCTT GACCGC AACACAG GCGGTC TTGTTATGATAGCAA Cthe_1962 2339325 - 2340287 + | RluA family pseudouridine synthase TERM 2579 2340365 - 2340308 - T 100 -15.1 -4.56775 | gap 1, opp_overlap 2340312 2340315 2340324, overlap 2340312 ATTCTGCCGTAAAAA GAT-ATTCTGCCGTAAAGCCGGCTCTTA ATT CAGAAGCCGGCTTTACGGCATCATTATC TGCTCAGCTTTTCGG TERM 2580 2340312 - 2340360 + T 100 -15.5 -3.55219 | gap 1, opp_overlap 2340308 2340312, overlap 2340315 2340324 TGCCGTAAAAAGATA TTCTGCCGTAAAGCCGGCT-CT TAATTC AGAAGCCGGCTTTACGGCATCA TTATCTGCTCAGCTT TERM 2581 2340360 - 2340312 - T 100 -16.1 -3.53855 | opp_overlap 2340312 2340315 2340324, overlap 2340308 TGCCGTAAAAAGATA TTCTGCCGTAAAGCCGGCTCTTA ATT CAGAAGCCGGCTTTACGGCATCA TTATCTGCTCAGCTT TERM 2582 2340315 - 2340357 + T 100 -21.6 -2.9062 | gap 1, opp_overlap 2340312 2340308, overlap 2340312 2340324 CGTAAAAAGATATTC TGCCGTAAAGCCGGCT-CT TAATTC AGAAGCCGGCTTTACGGCA TCATTATCTGCTCAG TERM 2583 2340324 - 2340348 + T 71 -7.9 -3.56568 | gap 1, opp_overlap 2340312 2340308, overlap 2340315 2340312 ATATTCTGCCGTAAA GCCGGCT-CT TAATTC AGAAGCCGGC TTTACGGCATCATTA Cthe_1963 2342899 - 2340386 - | glycoside hydrolase family protein TERM 2584 2343443 - 2343484 + r 76 -8.7 -3.42564 | opp_overlap 2343441 2343439 2343470, overlap 2343439 2343445 ACTTTCACCAATAGT TTGGACGGTTCCCTGTTTG ATAT CAAACAAAGAACCGTCCTC TGTTAATTTCTTAAT TERM 2585 2343445 - 2343482 + r 100 -15.7 -3.26924 | opp_overlap 2343441 2343439 2343470, overlap 2343443 2343439 TTTCACCAATAGTTT GGACGGTTCCCTGTTTG ATAT CAAACAAAGAACCGTCC TCTGTTAATTTCTTA Cthe_1964 2345024 - 2343495 - | FAD-dependent pyridine nucleotide-disulphide oxidoreductase Cthe_1965 2345601 - 2345038 - | alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen TERM 2586 2345316 - 2345327 + g 70 -3 -5.01553 | opp_overlap 2345316 ACGGATCGCCAATCA TTAC ATAA GTAA TTTTCTTTATAGCTT Cthe_1966 2346313 - 2345987 - | hypothetical protein Cthe_1967 2348064 - 2346328 - | DNA segregation ATPase FtsK/SpoIIIE and related proteins TERM 2587 2347284 - 2347298 + g 75 -5.8 -4.83243 | TAAATTTCTGTCTGA GTTTTT CGT AAAAAC TTTCTTTTGTGTCGC Cthe_1968 2351267 - 2348067 - | cell divisionFtsK/SpoIIIE TERM 2588 2350424 - 2350446 + g 73 -8.4 -3.61715 | opp_overlap 2350424 2350426, overlap 2350426 GCGAACGCGAAAAAA TGCTGCTGTG AAT CTCAGCAGTA TTCTTAAACAAAGTA TERM 2589 2350446 - 2350424 - G 83 -6.2 -5.09426 | opp_overlap 2350424 2350426, overlap 2350426 GCGAACGCGAAAAAA TGCTGCTGTG AAT CTCAGCAGTA TTCTTAAACAAAGTA TERM 2590 2350426 - 2350444 + g 70 -8.8 -3.38812 | opp_overlap 2350426 2350424, overlap 2350424 GAACGCGAAAAAATG CTGCTGTG AAT CTCAGCAG TATTCTTAAACAAAG TERM 2591 2350766 - 2350781 + g 71 -6.2 -4.19371 | GGATAATTATATCGA GATAAG AAGA CTTATC TTTCTTCGGCATTTC Cthe_1969 2352670 - 2351291 - | hypothetical protein TERM 2592 2351808 - 2351821 + g 72 -3.1 -5.09225 | overlap 2351809 GATGGTATTCCTGCT TCTGA TTTT TCAGG TTTTTTAAATACCAT TERM 2593 2352741 - 2352710 - R 100 -16.8 -2.83082 | gap 1, overlap 2352702 AAAAATCCCATTATA GCCCTAACCA-CACT CTC AGTGATGGTTAGGGC CAATCCAATTTCCAC Cthe_1970 2353091 - 2352786 - | hypothetical protein Cthe_1971 2353438 - 2353109 - | hypothetical protein Cthe_1972 2353783 - 2353463 - | hypothetical protein Cthe_1973 2355303 - 2353780 - | tetratricopeptide TPR_2 TERM 2594 2355438 - 2355450 + r 82 -7.7 -4.46105 | CTATAATGCTACGGC TGCCA TCT TGGCA TATTTTTTTATGAGT Cthe_1974 2356028 - 2355465 - | hypothetical protein Cthe_1975 2356641 - 2356934 + | transposase IS3/IS911 Cthe_1976 2356957 - 2357793 + | integrase catalytic subunit TERM 2595 2357813 - 2357799 - T 86 -11.4 -2.89 | overlap 2357796 AGTTGTATAGAATTA TGGGGC TCC GCCCCA AACCCCGTCCTCACC TERM 2596 2357860 - 2357837 - T 82 -11 -2.53876 | opp_overlap 2357827 CCTCACCGGAAGGCA GCCGGTCTGT CATA ACAGACCGGA AAGCAAAAGGATATA TERM 2597 2357931 - 2357884 - T 70 -7.1 -3.60234 | gap 1 GGATATATGTCCAAA GGATGTCAAGGGTCAAGATGAA CTCGC TTACGCTCG-CCCTTGACATCC TCCAACAGAGTGCAC Cthe_1977 2358322 - 2357996 - | hypothetical protein Cthe_1978 2358626 - 2358381 - | hypothetical protein Cthe_1979 2359959 - 2358607 - | hypothetical protein TERM 2598 2360006 - 2360058 + r 83 -8.1 -4.27117 | opp_overlap 2360014 2360017, overlap 2359991 2360009 2360018 TGCAATCCGTGGTTG CATTATAATAATGCCAGGAAA CTTTTCTGCCT TTTCCTGGCATTATTATATTA TTTCTATTCTGAAAA TERM 2599 2360009 - 2360055 + r 100 -14.2 -4.25053 | opp_overlap 2360014 2360017, overlap 2360006 2360018 AATCCGTGGTTGCAT TATAATAATGCCAGGAAA CTTTTCTGCCT TTTCCTGGCATTATTATA TTATTTCTATTCTGA TERM 2600 2360050 - 2360014 - R 80 -9.7 -3.40403 | opp_overlap 2360009 2360006 2360018, overlap 2360017 GTGGTTGCATTATAA TAATGCCAGGAAA CTTTTCTGCCT TTTCCTGGCATTA TTATATTATTTCTAT Cthe_1980 2361155 - 2360355 - | hypothetical protein TERM 2601 2361037 - 2361048 + g 72 -4.4 -4.68424 | AACGGATGCTTTCCC TTGC TGTC GCAA TTTTTCCCTGCCTTG TERM 2602 2361234 - 2361193 - R 100 -15.4 -4.64861 | opp_overlap 2361197, overlap 2361195 CGTGCTGAAAATAAA CAGAGCCTGACAAATAGT TTTTAG ACTATCTGCCAGGCTCTA TAGGTGAGTCATTCG TERM 2603 2361232 - 2361195 - R 100 -15.8 -3.93868 | opp_overlap 2361197, overlap 2361193 TGCTGAAAATAAACA GAGCCTGACAAATAGT TTTTAG ACTATCTGCCAGGCTC TATAGGTGAGTCATT TERM 2604 2361197 - 2361230 + r 73 -8.9 -2.91912 | opp_overlap 2361195 2361193 CTGAAAATAAACAGA GCCTGACAAATAGTT TTTA GACTATCTGCCAGGC TCTATAGGTGAGTCA Cthe_1981 2361805 - 2361416 - | hypothetical protein Cthe_1982 2362267 - 2362025 - | hypothetical protein Cthe_1983 2363820 - 2362636 - | transposase IS116/IS110/IS902 TERM 2605 2363152 - 2363164 + g 70 -5.5 -4.42974 | AATAAAATCCCTTTC GGGCT GAT AGTCC TTTCTTGTGTCTCCA TERM 2606 2363228 - 2363242 + g 73 -7.1 -4.0348 | overlap 2363238 CGCTGTATTTTAAGC GCCTG ATGCA CAGGC TTTATCGTCTGATAT TERM 2607 2363930 - 2363966 + r 87 -11.7 -2.52516 | overlap 2363930 AAGAGCGTTAGATTC GATTAGGGACATTTCTT GTA AAGAAGTGTCCCTTAAC CTTAATCCTCGCAAG TERM 2608 2363930 - 2363967 + r 82 -10.1 -3.21099 | gap 1, overlap 2363930 AAGAGCGTTAGATTC GATT-AGGGACATTTCTT GTA AAGAAGTGTCCCTTAACC TTAATCCTCGCAAGG Cthe_1984 2364593 - 2364246 - | hypothetical protein TERM 2609 2364371 - 2364395 + g 73 -5.7 -4.64598 | opp_overlap 2364365 TTTTGAGAACCAGCT TCTTTATCCAG CCG CTGGACAACGA TTTTTCCCATACTTC Cthe_1985 2366108 - 2364837 - | phage major capsid protein, HK97 Cthe_1986 2368573 - 2366420 - | P4 family phage/plasmid primase TERM 2610 2367736 - 2367763 + g 71 -6.3 -4.24342 | opp_overlap 2367717 2367716, overlap 2367716 CACGCAGCCTTTCTG CATTACCGCTG TCTGTC CTGTGGTAATG TTTCTTCATCGGAGG TERM 2611 2368648 - 2368606 - R 100 -15.8 -4.77173 | opp_overlap 2368610 CTCCGAGAAAATAAA TAGAGCCCGACAAATAGTTT TTT AGACTATCTGCCAGGCTCTA TAGGTGAGTCATTCG Cthe_1987 2369222 - 2368830 - | hypothetical protein TERM 2612 2369115 - 2369125 + g 71 -6.8 -4.05714 | TGATGTGGTAACGCT TGCC TCC GGCA TTTGTGCTTGAAGCT Cthe_1988 2369692 - 2369414 - | hypothetical protein TERM 2613 2371430 - 2371476 + r 100 -14.2 -4.25053 | opp_overlap 2371435 2371438, overlap 2371439 AATCCGTGGTTGCCT TATAATAATGCCAGGAAA CTTTTCTGCCT TTTCCTGGCATTATTATA TTATTTCTATTCTGA TERM 2614 2371471 - 2371435 - R 78 -9.7 -3.28712 | opp_overlap 2371430 2371439, overlap 2371438 GTGGTTGCCTTATAA TAATGCCAGGAAA CTTTTCTGCCT TTTCCTGGCATTA TTATATTATTTCTAT Cthe_1990 2371870 - 2371523 - | hypothetical protein TERM 2615 2372845 - 2372857 + G 73 -7.7 -3.90586 | opp_overlap 2372844 2372845 GAGTGGCAGAAAAGG CCTCT GGG AGAGG TTTATCCGATAGTAT Cthe_1991 2372443 - 2373429 + | transposase, mutator type Cthe_1992 2373483 - 2373776 + | transposase IS3/IS911 Cthe_1993 2373799 - 2374635 + | integrase catalytic subunit TERM 2616 2374655 - 2374641 - T 86 -11.4 -2.89 | overlap 2374638 AGTTGTATAGAATTA TGGGGC TCC GCCCCA AACCCCGTCCTCACC TERM 2617 2374702 - 2374679 - T 82 -11 -2.53876 | opp_overlap 2374669 CCTCACCGGAAGGCA GCCGGTCTGT CATA ACAGACCGGA AAGCAAAAGGATATA TERM 2618 2374773 - 2374726 - T 70 -7.1 -3.60234 | gap 1 GGATATATGTCCAAA GGATGTCAAGGGTCAAGATGAA CTCGC TTACGCTCG-CCCTTGACATCC TCCAACAGAGTGCAC Cthe_1994 2375205 - 2374867 - | hypothetical protein TERM 2619 2376197 - 2376177 - g 77 -10.4 -3.4376 | overlap 2376167 2376165 ATACAGGGATGATAA GGCAGCCC TGCTG GAGCTGCC CAAGACAACTTTTGA Cthe_1995 2375284 - 2376798 + | hypothetical protein Cthe_1996 2376792 - 2377517 + | IstB-like ATP-binding protein TERM 2620 2377575 - 2377554 - T 80 -5.9 -4.96848 | GGGTTTACATAAAAA TTCCCCA CCGGTGCC TGGGGAA AAAATTTTGCAAAAG Cthe_1997 2377857 - 2377543 - | hypothetical protein Cthe_1998 2378625 - 2377870 - | hypothetical protein Cthe_1999 2379886 - 2378816 - | integrase catalytic subunit TERM 2621 2379227 - 2379237 + g 74 -4.6 -4.90013 | opp_overlap 2379227 CAAAAGAAACAATAA CTCG TAG CGGG TTTTTCGTTCAGTTA TERM 2622 2380725 - 2380772 + r 70 -7.1 -3.60234 | gap 1 GTGCACTCTGTTGGA GGATGTCAAGGG-CGAGCGTAA GCGAG TTCATCTTGACCCTTGACATCC TTTGGACATATATCC TERM 2623 2380796 - 2380819 + r 82 -11 -2.53876 | opp_overlap 2380815 TATATCCTTTTGCTT TCCGGTCTGT TATG ACAGACCGGC TGCCTTCCGGTGAGG TERM 2624 2380843 - 2380857 + r 86 -11.4 -2.89 | overlap 2380841 GGTGAGGACGGGGTT TGGGGC GGA GCCCCA TAATTCTATACAACT Cthe_2000 2381699 - 2380863 - | integrase catalytic subunit Cthe_2001 2382015 - 2381722 - | transposase IS3/IS911 Cthe_2002 2382582 - 2382106 - | hypothetical protein Cthe_2004 2383682 - 2385166 + | transposase TERM 2625 2385354 - 2385333 - g 90 -11.6 -3.79906 | opp_overlap 2385353 TCAGCGGGAGAATAA CCGGATCC AGAGAG GGATCCGG CAAGCAGGCTTTCCT Cthe_2005 2385166 - 2385924 + | IstB-like ATP-binding protein TERM 2626 2386197 - 2386185 - T 80 -9.1 -3.60627 | overlap 2386170 GCACTTCATTGTAAA TGCCG CCC CGGCA CTGAAAACAGCCAGC TERM 2627 2387232 - 2387284 + T 100 -11.9 -3.95435 | gap 1, opp_overlap 2387240, overlap 2387240 TGCAAAACTACCTCA GTAA-AAAATAATGCCAAGAAA CTTTCTACCT TTTCTTGGCATTATTTTATTAC TTCTATTTTGAAAAA TERM 2628 2387240 - 2387275 + T 93 -9.3 -4.82756 | opp_overlap 2387240, overlap 2387232 TACCTCAGTAAAAAA TAATGCCAAGAAA CTTTCTACCT TTTCTTGGCATTA TTTTATTACTTCTAT TERM 2629 2387275 - 2387240 - T 95 -9.3 -5.15634 | opp_overlap 2387232 2387240 TACCTCAGTAAAAAA TAATGCCAAGAAA CTTTCTACCT TTTCTTGGCATTA TTTTATTACTTCTAT Cthe_2008 2387932 - 2387414 - | hypothetical protein Cthe_2009 2388701 - 2388072 - | hypothetical protein TERM 2630 2388168 - 2388182 + g 78 -7.1 -4.33708 | opp_overlap 2388162 AATATTCAATGTCCC CCGGA CCTCA TCCGG TTTTAATCCTGCTTT Cthe_2010 2390149 - 2388911 - | hypothetical protein TERM 2631 2391181 - 2391228 + r 70 -7.1 -3.60234 | gap 1 GTGCACTCTGTTGGA GGATGTCAAGGG-CGAGCGTAA GCGAG TTCATCTTGACCCTTGACATCC TTTGGACATATATCC TERM 2632 2391252 - 2391275 + r 82 -11 -2.53876 | opp_overlap 2391271 TATATCCTTTTGCTT TCCGGTCTGT TATG ACAGACCGGC TGCCTTCCGGTGAGG TERM 2633 2391299 - 2391313 + r 86 -11.4 -2.89 | overlap 2391297 GGTGAGGACGGGGTT TGGGGC GGA GCCCCA TAATTCTATACAACT Cthe_2012 2392155 - 2391319 - | integrase catalytic subunit Cthe_2013 2392471 - 2392178 - | transposase IS3/IS911 Cthe_2014 2393119 - 2392481 - | hypothetical protein TERM 2634 2392936 - 2392948 + g 72 -3.4 -5.09225 | opp_overlap 2392936 TGAGAATGATAATAC TCGA CGTCC TCGA TTTTTTCAGTAGAAT Cthe_2015 2393764 - 2393381 - | hypothetical protein TERM 2635 2395746 - 2395771 + G 74 -6.1 -4.37092 | overlap 2395747 AAGATTTTAACGGGA AGTGCATGGCA AAGA TGCCGTGTACA TTTTATGAGAAACGT TERM 2636 2395747 - 2395770 + G 73 -9.6 -3.21934 | overlap 2395746 AGATTTTAACGGGAA GTGCATGGCA AAGA TGCCGTGTAC ATTTTATGAGAAACG Cthe_2017 2395008 - 2396228 + | transposase, mutator type Cthe_2018 2397694 - 2396459 - | hypothetical protein Cthe_2019 2399574 - 2397727 - | hypothetical protein TERM 2637 2399681 - 2399717 + r 83 -9.7 -3.94648 | opp_overlap 2399681, overlap 2399674 2399684 2399685 ACCCTCAGTAAAAAA TAATGCCAGGAAA CTTTTCTGCCT TTTCCTGGCATTA TTATATTATTTCTAT TERM 2638 2399717 - 2399681 - R 100 -9.7 -5.14965 | opp_overlap 2399681 2399674 2399684 2399685 ACCCTCAGTAAAAAA TAATGCCAGGAAA CTTTTCTGCCT TTTCCTGGCATTA TTATATTATTTCTAT TERM 2639 2399684 - 2399714 + r 71 -7 -4.06177 | opp_overlap 2399681, overlap 2399681 2399674 2399685 CTCAGTAAAAAATAA TGCCAGGAAA CTTTTCTGCCT TTTCCTGGCA TTATTATATTATTTC Cthe_2020 2400813 - 2400022 - | hypothetical protein TERM 2640 2400901 - 2400858 - R 95 -10.4 -4.41348 | opp_overlap 2400840 2400862, overlap 2400860 TCGTGCTGAAATAAA TTGAGCCCGACAAATAGTTT TTTA AGACTATCTGCCAGGCTCTA TAGGTGAGTCATTCG TERM 2641 2400899 - 2400860 - R 95 -13 -2.54371 | opp_overlap 2400840 2400862, overlap 2400858 GTGCTGAAATAAATT GAGCCCGACAAATAGTTT TTTA AGACTATCTGCCAGGCTC TATAGGTGAGTCATT Cthe_2021 2401475 - 2401083 - | hypothetical protein Cthe_2022 2401945 - 2401667 - | hypothetical protein TERM 2642 2402284 - 2402319 + r 77 -8.6 -3.59995 | gap 1, opp_overlap 2402289 2402298, overlap 2402277 2402282 2402287 CTACTCGTTCCCTCA CT-ACAGGGATTATATA TAG TATATAATCCCTGTTAC TATTTATCAATTTAA TERM 2643 2402287 - 2402315 + r 100 -16.3 -3.50737 | opp_overlap 2402289 2402298, overlap 2402277 2402284 2402282 CTCGTTCCCTCACTA CAGGGATTATATA TAG TATATAATCCCTG TTACTATTTATCAAT TERM 2644 2402313 - 2402289 - R 100 -13.1 -2.78384 | opp_overlap 2402277 2402287 2402284 2402282, overlap 2402298 CGTTCCCTCACTACA GGGATTATATA TAG TATATAATCCC TGTTACTATTTATCA Cthe_2024 2403539 - 2402349 - | transposase IS116/IS110/IS902 TERM 2645 2403994 - 2403969 - R 75 -4.7 -4.98255 | overlap 2403963 TTTTAACTACAAAAA GAGACCGAACA TAAT CGTCCAATCTC TTCCCGTTAATCCAT Cthe_2025 2404582 - 2404025 - | resolvase helix-turn-helix region containing protein Cthe_2026 2405199 - 2404849 - | hypothetical protein Cthe_2027 2405441 - 2405202 - | hypothetical protein Cthe_2028 2405809 - 2405546 - | hypothetical protein TERM 2646 2405914 - 2405888 - R 86 -5.9 -5.38958 | gap 1, opp_overlap 2405913 ATGGATAAAGAAAAA GGCCACATCAGC CGTA ACTG-TGTGACC AATAATTTTTGTTTG Cthe_2029 2406751 - 2405948 - | hypothetical protein TERM 2647 2406382 - 2406363 - G 73 -5.8 -4.51799 | overlap 2406381 ATGAAATTTATAAAA TCACTTAG CTTA CTAAATGA AAAGTCTTTCTGGAA Cthe_2030 2408454 - 2406778 - | hypothetical protein TERM 2648 2408533 - 2408515 - R 91 -11.7 -3.56325 | opp_overlap 2408515 GCTTTATAATCATAA CCACCGG CTCAT CCGGTGG TTTGCTCTAGCCCTA TERM 2649 2408515 - 2408533 + r 100 -11.7 -3.83502 | opp_overlap 2408515 GCTTTATAATCATAA CCACCGG CTCAT CCGGTGG TTTGCTCTAGCCCTA TERM 2650 2408620 - 2408631 + r 86 -5.8 -5.47846 | opp_overlap 2408620 ATTCTTCTCAAGCCA CCAC TAAA GTGG TTTTATTTTTTGCTT Cthe_2031 2409110 - 2408634 - | transposase IS200-like protein TERM 2651 2409158 - 2409174 + r 71 -2.3 -5.32882 | overlap 2409118 CGAACCTACATTATT GTAAC AAAGGAG GTTAC TTTTTTCTACTCATA TERM 2652 2409226 - 2409208 - R 100 -14.6 -3.28791 | opp_overlap 2409208 ACTGTCTCTTTAGAA CCACTGGC ATA GCCAGTGG TTTTCTTTAAACAAT TERM 2653 2409208 - 2409226 + r 100 -14.6 -4.87133 | opp_overlap 2409208 ACTGTCTCTTTAGAA CCACTGGC ATA GCCAGTGG TTTTCTTTAAACAAT TERM 2654 2409280 - 2409238 - R 84 -10.2 -3.53012 | opp_overlap 2409234 2409241 2409244 2409245, overlap 2409241 2409244 GTGGTTTTCTTTAAA CAATAATGCCAGGAAA CTTTTCTGCCT TTTCCTGGCATTATTA TATTATTTCTATTCT TERM 2655 2409241 - 2409277 + r 83 -9.7 -3.94648 | opp_overlap 2409238 2409241 2409244, overlap 2409234 2409244 2409245 GTTTTCTTTAAACAA TAATGCCAGGAAA CTTTTCTGCCT TTTCCTGGCATTA TTATATTATTTCTAT TERM 2656 2409277 - 2409241 - R 83 -9.7 -3.90744 | opp_overlap 2409241 2409234 2409244 2409245, overlap 2409238 2409244 GTTTTCTTTAAACAA TAATGCCAGGAAA CTTTTCTGCCT TTTCCTGGCATTA TTATATTATTTCTAT TERM 2657 2409274 - 2409244 - R 71 -7 -4.08557 | opp_overlap 2409244 2409241 2409234 2409245, overlap 2409241 2409238 TTCTTTAAACAATAA TGCCAGGAAA CTTTTCTGCCT TTTCCTGGCA TTATTATATTATTTC TERM 2658 2409244 - 2409274 + r 71 -7 -4.06177 | opp_overlap 2409241 2409238 2409244, overlap 2409241 2409234 2409245 TTCTTTAAACAATAA TGCCAGGAAA CTTTTCTGCCT TTTCCTGGCA TTATTATATTATTTC Cthe_2032 2415343 - 2409329 - | hypothetical protein TERM 2659 2411848 - 2411832 - G 84 -12.3 -3.04461 | GATGTACTTTTAACA CCGTCAG ATG CTGACGG AACAAAACTGAAGTC TERM 2660 2412887 - 2412865 - G 71 -6.2 -4.2528 | opp_overlap 2412865 2412877 TCTCAACCGAATAAA TTCCGGCACT GTC AGTGGCGGCA TATACTGAAAATGCC Cthe_2033 2415760 - 2415446 - | hypothetical protein TERM 2661 2415536 - 2415522 - G 70 -3.6 -4.87665 | overlap 2415524 TTGTATTTATAAAAA TAGATT AAA AATCCA ACAAAAAAACACAGT Cthe_2034 2417640 - 2415757 - | serine/threonine protein kinase TERM 2662 2416755 - 2416738 - G 74 -4.1 -5.08255 | opp_overlap 2416738, overlap 2416740 AGCCCCAAAAGAAAA TATGTCG CTTT CGACAGA CATTTTTCCCTGTTC TERM 2663 2416753 - 2416740 - G 73 -6.7 -4.16397 | opp_overlap 2416738, overlap 2416738 CCCCAAAAGAAAATA TGTCG CTTT CGACA GACATTTTTCCCTGT TERM 2664 2417189 - 2417204 + g 70 -2.6 -5.13741 | gap 1 ATATCGTTCAGCCCA TTGT-CC AAC GGCACAA TTTTTCTTAACTTCC Cthe_2036 2419547 - 2418891 - | amidohydrolase 2 TERM 2665 2419460 - 2419445 - G 81 -11.8 -2.81888 | overlap 2419442 2419437 TTTGAAAGTCAATCA GCGGGC TAAT GCCCGC AACGACAAAAACATT Cthe_2038 2423934 - 2421511 - | cellulosome enzyme, dockerin type I TERM 2666 2422222 - 2422236 + g 73 -5.7 -4.57353 | opp_overlap 2422209, overlap 2422209 CACAGCCGATTTTTC GCTGT CATAT ACAGC TTTTGTATAATAACG Cthe_2039 2428213 - 2424458 - | DNA helicase/exodeoxyribonuclease V, subunit A TERM 2667 2425167 - 2425177 + g 73 -5.4 -4.59109 | TCTTCTGCATATTCC GAAG GCT CTTC TTTTTCCAAACTGTC TERM 2668 2426186 - 2426174 - G 74 -9.1 -3.53811 | overlap 2426182 CTCATCGGTGGTAAA GCCGA CAA TCGGC GAACGCAGCACCGAA Cthe_2040 2431682 - 2428242 - | DNA helicase/exodeoxyribonuclease V, subunit B TERM 2669 2428371 - 2428357 - G 82 -8.6 -4.17556 | CACACCGGCAAGAAA CTGCAA TAC TTGCAG GACGTGGTTCCCTTC TERM 2670 2430460 - 2430472 + g 77 -6.2 -4.65895 | CTCTCTCGGTCAATG CCGG TGAGC CCGG TTTTTAGGTAGCGGA Cthe_2041 2432249 - 2431800 - | hypothetical protein TERM 2671 2431873 - 2431857 - G 73 -7.3 -4.04806 | overlap 2431859 CCCCATACCAAACAA TAGTGCT GCC AGCACCA AAAGCCAATGCCTTA Cthe_2044 2434282 - 2433680 - | hypothetical protein Cthe_2045 2435189 - 2434383 - | hypothetical protein Cthe_2046 2436849 - 2436337 - | hypothetical protein Cthe_2047 2438571 - 2436871 - | hypothetical protein Cthe_2048 2439269 - 2438748 - | hypothetical protein TERM 2672 2438859 - 2438876 + g 87 -6.3 -5.30348 | ACCTCTGCCATGTTT TACGTCG TTTT TGACGTA TTTTTGTTCTTCCAT TERM 2673 2439233 - 2439256 + g 89 -4.6 -5.64274 | TTATATATTCTGTAG TATTTTTGGC ACAA GCCAGTAATA TTTTTTTATCCATAA Cthe_2049 2440201 - 2439317 - | hypothetical protein Cthe_2050 2441024 - 2440185 - | CRISPR-associated Csm3 family protein Cthe_2051 2441799 - 2441017 - | CRISPR-associated Csm3 family protein Cthe_2052 2442222 - 2441830 - | hypothetical protein Cthe_2053 2443471 - 2442224 - | hypothetical protein TERM 2674 2442595 - 2442620 + g 75 -7.7 -3.98981 | opp_overlap 2442598 2442602, overlap 2442598 CCAATTTGGCATCAG CAACTAATTTG ACGG CAAAATAGTTG TTATTATTCGCTATT TERM 2675 2443240 - 2443252 + g 70 -3.3 -4.87665 | opp_overlap 2443240 TATTCCTGAAATAAA CCCAG TTT CTGCG TTTTTCTCCGTCCAC Cthe_2054 2444001 - 2443456 - | hypothetical protein Cthe_2055 2445926 - 2444007 - | hypothetical protein TERM 2676 2444046 - 2444033 - G 73 -6.7 -4.2828 | CCGCATCCATTAAAA GGATG ACGT CATCC CACAAAGATACATAA TERM 2677 2445019 - 2445044 + g 71 -4.1 -4.93877 | gap 1, opp_overlap 2445019 2445023 2445024 CCGTCCCGAACACCA CAAAG-GTAACA TAC TGTTCCTCTTTG TTTTATTTCCTCAAC Cthe_2056 2446875 - 2445934 - | hypothetical protein Cthe_2057 2448814 - 2446982 - | CRISPR-associated TM1812 family protein Cthe_2058 2449730 - 2449203 - | Appr-1-p processing protein TERM 2678 2450131 - 2450098 - R 91 -5.4 -5.7827 | AACACAAATAAAAAA TCCTCCAAACACTC CACACC AAGCATTTGAAGGA CTCTAAACTGGAGCC TERM 2679 2450280 - 2450264 - R 76 -9.5 -3.10112 | opp_overlap 2450263 2450262, overlap 2450255 ATCGAACCCACGCAA TCAGCTT GGG AAGCTGA CATTCTACCACTGAA Cthe_2059 2451035 - 2450391 - | RNA polymerase factor sigma-70 Cthe_2060 2452170 - 2451337 - | RNA methyltransferase TERM 2680 2451541 - 2451529 - G 83 -6.2 -5.00884 | ATCTGCCTCAAAAAA CGGC TTTTC GCCG GAAAGATCGGTCCCG TERM 2681 2452312 - 2452266 - R 100 -9.6 -5.40072 | opp_overlap 2452256 2452265, overlap 2452267 TTTTTCTCAAAAAAA TTGAGTTTTAGCCGGATTTT CCCTCTT AAATTCCGGCAAAAACTCAC ACATTATGTCAATTC TERM 2682 2452311 - 2452267 - R 100 -13.1 -3.83561 | opp_overlap 2452256 2452265, overlap 2452266 TTTTCTCAAAAAAAT TGAGTTTTAGCCGGATTTT CCCTCTT AAATTCCGGCAAAAACTCA CACATTATGTCAATT Cthe_2061 2452743 - 2452321 - | hypothetical protein Cthe_2062 2452930 - 2454465 + | GerA spore germination protein TERM 2683 2455405 - 2455385 - g 74 -4.8 -4.70879 | gap 1, opp_overlap 2455387 CCTAAATTTCAAAAA TATGTG-GC TTAT GCTCACATA CCTTTACTGTTTGCC Cthe_2063 2454455 - 2455576 + | spore germination protein TERM 2684 2455917 - 2455900 - g 82 -8.4 -4.14472 | CCAATACGCTGAAAA CCTGGG ACATCA CCCAGG TGGGCAACTCGTTTA Cthe_2064 2455560 - 2456831 + | spore germination B3 GerAC like Cthe_2065 2458326 - 2456920 - | cysteinyl-tRNA synthetase Cthe_2066 2459059 - 2458313 - | serine O-acetyltransferase TERM 2685 2459198 - 2459171 - H 70 -6.3 -4.3208 | gap 1 CTGTACAAGTTAAAA CCCCGCC-CT GCAAAACAT AGAGGCGGGG TAAAATCGCGGTTCC Cthe_2067 2459688 - 2460095 + | hypothetical protein TERM 2686 2460151 - 2460110 - T 100 -21.9 -3.9163 | opp_overlap 2460110 2460111 2460119, overlap 2460112 2460119 AAACCAGATATCAAA CATGATAAAGGGCCTCAAG TTTC CTTGAGGCCCTTTATCACA TTTGCACCCAAAATG TERM 2687 2460110 - 2460151 + T 100 -17.5 -3.53224 | opp_overlap 2460110 2460112 2460119, overlap 2460111 2460119 AAACCAGATATCAAA CATGATAAAGGGCCTCAAG TTTC CTTGAGGCCCTTTATCACA TTTGCACCCAAAATG TERM 2688 2460111 - 2460150 + T 100 -21 -2.71791 | opp_overlap 2460110 2460112 2460119, overlap 2460110 2460119 AACCAGATATCAAAC ATGATAAAGGGCCTCAAG TTTC CTTGAGGCCCTTTATCAC ATTTGCACCCAAAAT TERM 2689 2460149 - 2460112 - T 100 -24.5 -3.53419 | opp_overlap 2460111 2460110 2460119, overlap 2460110 2460119 ACCAGATATCAAACA TGATAAAGGGCCTCAAG TTTC CTTGAGGCCCTTTATCA CATTTGCACCCAAAA TERM 2690 2460142 - 2460119 - T 100 -16.8 -4.11033 | opp_overlap 2460111 2460110 2460119, overlap 2460112 2460110 ATCAAACATGATAAA GGGCCTCAAG TTTC CTTGAGGCCC TTTATCACATTTGCA TERM 2691 2460119 - 2460142 + T 100 -16.8 -3.95219 | opp_overlap 2460119 2460112 2460110, overlap 2460111 2460110 ATCAAACATGATAAA GGGCCTCAAG TTTC CTTGAGGCCC TTTATCACATTTGCA Cthe_2068 2461447 - 2460560 - | 8-oxoguanine DNA glycosylase-like protein Cthe_2069 2461687 - 2462463 + | hypothetical protein Cthe_2070 2463313 - 2462456 - | hypothetical protein TERM 2692 2462514 - 2462490 - G 88 -11.5 -3.75153 | opp_overlap 2462476 2462475 2462490, overlap 2462509 CGCTTTGAATCCAAA GCCTTGTTTGG TTC CAAAACAAGGC TTTTTGCCGTGATGT TERM 2693 2462490 - 2462514 + g 93 -11.5 -4.63928 | opp_overlap 2462490 2462509, overlap 2462476 2462475 CGCTTTGAATCCAAA GCCTTGTTTGG TTC CAAAACAAGGC TTTTTGCCGTGATGT TERM 2694 2463469 - 2463457 - R 90 -4.8 -5.76633 | opp_overlap 2463457 GGACATATAAAAAAA GACC GTTTG GGTC TTTTAAAAGCCGTCC TERM 2695 2463530 - 2463547 + r 95 -8.5 -5.04987 | opp_overlap 2463530 TTAAAACAGGGAAAA GAGAGTA AATC TACTCTC TTTTTTCCCAATATT TERM 2696 2463547 - 2463530 - R 88 -8.5 -4.35581 | opp_overlap 2463530 TTAAAACAGGGAAAA GAGAGTA AATC TACTCTC TTTTTTCCCAATATT TERM 2697 2463910 - 2463892 - R 91 -7.3 -5.21709 | opp_overlap 2463893, overlap 2463893 TTTTATATCAAAAAA GCGGGCC TGTTC GGCCCGT TTTCGCGTGTTTAAG TERM 2698 2463893 - 2463909 + r 100 -10.8 -4.21827 | opp_overlap 2463892 2463893 TTTATATCAAAAAAG CGGGCC TGTTC GGCCCG TTTTCGCGTGTTTAA TERM 2699 2463909 - 2463893 - R 89 -10.8 -3.72302 | opp_overlap 2463893, overlap 2463892 TTTATATCAAAAAAG CGGGCC TGTTC GGCCCG TTTTCGCGTGTTTAA Cthe_2071 2464851 - 2463928 - | hypothetical protein Cthe_2072 2465837 - 2465085 - | hypothetical protein TERM 2700 2466072 - 2466047 - H 85 -11.1 -3.26947 | opp_overlap 2466047, overlap 2466035 GAACCTTGATACTAA CTGCCGGCCTT TTAA AAGACCGGCGG TTGTTCAGATAAACC TERM 2701 2466047 - 2466072 + H 89 -11.1 -3.65046 | opp_overlap 2466047 2466035 GAACCTTGATACTAA CTGCCGGCCTT TTAA AAGACCGGCGG TTGTTCAGATAAACC TERM 2702 2466085 - 2466110 + H 100 -11.9 -5.14626 | opp_overlap 2466086, overlap 2466086 CGGTTGTTCAGATAA ACCGCACCTTT CTGC AAAGGTGCGGA TTTTATTTTAATAAT TERM 2703 2466086 - 2466109 + H 100 -15.4 -3.67149 | opp_overlap 2466086, overlap 2466085 GGTTGTTCAGATAAA CCGCACCTTT CTGC AAAGGTGCGG ATTTTATTTTAATAA TERM 2704 2466109 - 2466086 - H 100 -15.4 -4.03234 | opp_overlap 2466085 2466086 GGTTGTTCAGATAAA CCGCACCTTT CTGC AAAGGTGCGG ATTTTATTTTAATAA TERM 2705 2466402 - 2466423 + H 90 -9.5 -4.17009 | opp_overlap 2466401 2466405 ATGAAAGAAATTTAG GAACAAGGT TTAA GCCTTGTTC TTCTTGTTATTATTT TERM 2706 2467735 - 2467771 + G 85 -3.8 -5.66926 | opp_overlap 2467721, overlap 2467742 TCACAGGAATACAGA TATTATCCCAGTGCGT ACTGG ATTTTCTGGGATAATA TTTTCTTTTTTTTAC Cthe_2073 2466588 - 2467769 + | amidohydrolase Cthe_2074 2467893 - 2468111 + | hypothetical protein TERM 2707 2468164 - 2468132 - T 100 -10.7 -5.38497 | opp_overlap 2468132 AGGCAAATTAAAAAA CCAGGTGCCTT GCTTCTTTCAT AAGGCACCTGG TTTTTCCAATCAATT TERM 2708 2468132 - 2468164 + T 100 -11.4 -4.63184 | opp_overlap 2468132 AGGCAAATTAAAAAA CCAGGTGCCTTG CTTCTTTCA TAAGGCACCTGG TTTTTCCAATCAATT TERM 2709 2468614 - 2468582 - T 100 -12.9 -5.49568 | gap 1, opp_overlap 2468612, overlap 2468612 AATTTAAAACAAAAA GCCTTCCTGCAATG CTTGTT CAT-GCAGGAAGGC GGGAAATTTCAATCC Cthe_2075 2469368 - 2468640 - | hypothetical protein TERM 2710 2469523 - 2469544 + H 77 -4.5 -5.24796 | TTTTGTCATGAATCC CAAAAATGT ATTT ACATATTTG TTTTTATTGTATAAA TERM 2711 2470486 - 2470466 - g 82 -4.2 -5.4477 | AAAGTTGCAAAAAAA TTTAATAA AGTTA TTATTAAA GTAAAAGATACGGGC TERM 2712 2470696 - 2470663 - g 70 -2.5 -5.03713 | gap 1, overlap 2470666 AAGAAGCAAAGAAAA CAAGGGAAGCGA-ATT TAT AATATCACTTCCCATT CAGCTCTGTGAGGAA TERM 2713 2470693 - 2470666 - g 87 -8.6 -4.57791 | gap 1, overlap 2470663 AAGCAAAGAAAACAA GGGAAGCGA-ATT TAT AATATCACTTCCC ATTCAGCTCTGTGAG Cthe_2076 2469644 - 2470807 + | periplasmic sensor signal transduction histidine kinase Cthe_2077 2471274 - 2470894 - | CoA-binding protein TERM 2714 2471088 - 2471070 - G 80 -10.3 -3.66018 | CCACCATGTCAATAA CTTCCGG CACTT CCGGAAG AGACGACAAATCCTT Cthe_2078 2472000 - 2471341 - | hypothetical protein TERM 2715 2472040 - 2472053 + H 70 -3.9 -5.07971 | TTCCCTGGTTGTTTC TCAAT TTTT ATTGA TTTTTGATTATTTTA Cthe_2079 2472248 - 2472814 + | thylakoidal processing peptidase TERM 2716 2472877 - 2472902 + T 95 -10.5 -4.59853 | opp_overlap 2472882, overlap 2472878 TAATTTCGTGTTTTA ATAAAGGGGCT ATTC AGCCCCTTTAC TTTTTACAGCCTTGA TERM 2717 2472878 - 2472901 + T 100 -14 -3.3543 | opp_overlap 2472882, overlap 2472877 AATTTCGTGTTTTAA TAAAGGGGCT ATTC AGCCCCTTTA CTTTTTACAGCCTTG TERM 2718 2472897 - 2472882 - T 91 -10.4 -4.15044 | opp_overlap 2472878 2472877 TCGTGTTTTAATAAA GGGGCT ATTC AGCCCC TTTACTTTTTACAGC Cthe_2080 2473501 - 2472929 - | NUDIX hydrolase TERM 2719 2473185 - 2473147 - G 90 -11.3 -3.8186 | gap 1, opp_overlap 2473175, overlap 2473175 GACCTGAATTAATAA GATTCATGG-CTTCGTCA ACCT TAACAAAGTCCATGAATC GTGAACTGTTTTTTC Cthe_2081 2475399 - 2473651 - | small GTP-binding protein TERM 2720 2474390 - 2474402 + g 75 -7.7 -4.12554 | overlap 2474398 ACATCCTTAAGTTGT GCTTC AAG GAAGC TTATTCTTCTCTTTA Cthe_2082 2475798 - 2475559 - | hypothetical protein TERM 2721 2475733 - 2475743 + g 73 -5.4 -4.6391 | overlap 2475736 GTCATCCCATACTAT TTCC AAA GGAA TTTTGTCTCCTTCTT Cthe_2083 2477024 - 2475825 - | DNA-directed DNA polymerase Cthe_2084 2477545 - 2477252 - | hypothetical protein TERM 2722 2477766 - 2477815 + r 100 -11.6 -5.84381 | opp_overlap 2477764 2477777 AATTAAAAATTCATA CACTGCAAAAAGCTCAAGGTTC TCCCCT GACCTTTGAGCTTTTTGCAGGC TTTTTTTATTACTCC Cthe_2085 2478342 - 2477824 - | deoxyuridine 5'-triphosphate nucleotidohydrolase TERM 2723 2478027 - 2478047 + g 70 -8.1 -3.65963 | overlap 2478026 CCGAAGAAATTTCTC CGCCGCCGG ATG CCGGGGACG TGTTTGTAATTATTA Cthe_2086 2480965 - 2478446 - | peptidase U32 TERM 2724 2479152 - 2479132 - G 76 -11.1 -2.57564 | overlap 2479131 TCAGCTTGTCATAAT TTCCCCTGG TTA CCGGGGGAA TAAATACAAACAGCT TERM 2725 2480390 - 2480400 + g 70 -8.2 -3.7282 | CTGGGCACATTTTCC GCGG TTT CCGC TTCTTCCTCCAATAA Cthe_2087 2481846 - 2480962 - | metalloenzyme TERM 2726 2481896 - 2481878 - R 88 -6.7 -5.25735 | overlap 2481871 GTAAAAAAGTAAAAA GAAGCGC CCTTT ACGCTTC CCTGCCATTTAACCG Cthe_2088 2482334 - 2481924 - | hypothetical protein TERM 2727 2482479 - 2482467 - R 80 -7.7 -4.18094 | opp_overlap 2482467 GAAATTATGCGAAAA GCCAT GGT ATGGC TTTAGAAATGTAAAA TERM 2728 2482467 - 2482479 + r 73 -7.7 -3.59262 | opp_overlap 2482467 GAAATTATGCGAAAA GCCAT GGT ATGGC TTTAGAAATGTAAAA TERM 2729 2482496 - 2482515 + r 80 -9.2 -3.63266 | opp_overlap 2482497, overlap 2482497 2482499 TTAGAAATGTAAAAA AGACCGGC ACAA GCCGGTCC TTTCAAATCAGTTTT TERM 2730 2482514 - 2482497 - R 100 -12.7 -5.24449 | opp_overlap 2482496 2482497 2482499 TAGAAATGTAAAAAA GACCGGC ACAA GCCGGTC CTTTCAAATCAGTTT TERM 2731 2482497 - 2482514 + r 95 -12.7 -2.77236 | opp_overlap 2482497, overlap 2482496 2482499 TAGAAATGTAAAAAA GACCGGC ACAA GCCGGTC CTTTCAAATCAGTTT TERM 2732 2482499 - 2482512 + r 75 -9.5 -2.92792 | opp_overlap 2482497, overlap 2482497 2482496 GAAATGTAAAAAAGA CCGGC ACAA GCCGG TCCTTTCAAATCAGT Cthe_2089 2484760 - 2482535 - | glycoside hydrolase family protein TERM 2733 2484645 - 2484655 + g 70 -5.4 -4.43501 | opp_overlap 2484645 AAAAGATCCTTATAA GATG TCC CATC TTTTGTAGGTGCCTT TERM 2734 2485613 - 2485586 - R 82 -2.7 -5.93252 | overlap 2485588 GCCAAAAATAAAAAA GCCTACGGC GCAGTTAAAA GCCATAGAC TAAAAATATCTTGCC Cthe_2090 2486231 - 2485653 - | hypothetical protein Cthe_2091 2487687 - 2486389 - | hypothetical protein TERM 2735 2487877 - 2487833 - R 100 -15.4 -5.63103 | opp_overlap 2487833 2487837 TGGCAAGTAAAAAAA TAAACCGTTTATACTCTCAA AAAGA TTGAAAGTATCAACGGTTTA TCATCTTCATTATCG TERM 2736 2487833 - 2487877 + r 100 -13.2 -2.82156 | opp_overlap 2487833, overlap 2487837 TGGCAAGTAAAAAAA TAAACCGTTTATACTCTCAA AAAGA TTGAAAGTATCAACGGTTTA TCATCTTCATTATCG TERM 2737 2487837 - 2487873 + r 86 -9.6 -4.08058 | opp_overlap 2487833, overlap 2487833 AAGTAAAAAAATAAA CCGTTTATACTCTCAA AAAGA TTGAAAGTATCAACGG TTTATCATCTTCATT Cthe_2092 2488772 - 2487918 - | dimethyladenosine transferase TERM 2738 2488905 - 2488885 - R 95 -10.4 -4.28049 | TCCAAAATTTTAAAA GCCGGGAC ATTCA ATCCCGGC CCCATTCAGTCCCTT Cthe_2093 2490050 - 2488992 - | hypothetical protein TERM 2739 2490237 - 2490253 + r 79 -6.6 -4.58085 | TGTTATTGTTTTTAA TCGGTA AATGA TACCGA TTTATTTATCCATAT TERM 2740 2490300 - 2490280 - R 100 -10.5 -4.99638 | ATATTTATACAAAAA GCAGGTAAA TGA CTTACCTGC TGCCTGAATTTTAAG Cthe_2094 2490945 - 2490394 - | hypothetical protein Cthe_2095 2491819 - 2491052 - | TatD family hydrolase TERM 2741 2491698 - 2491748 + g 75 -2.6 -5.31456 | gap 1, opp_overlap 2491682 2491681 2491698, overlap 2491698 2491710 GTTTCCAGCGAGGAA GCCATGTCGGCGGCGGCGTTT AAAATGTAGG AAACGCCGCTGTC-ATAGGCC TTTTTTATCACTTCA Cthe_2096 2493836 - 2491872 - | methionyl-tRNA synthetase TERM 2742 2492508 - 2492520 + g 80 -7.7 -4.45817 | opp_overlap 2492507, overlap 2492504 ATTGTATAAAACAGC GGCAA GTC TTGCC TTGTTTTCTTCACTT TERM 2743 2492580 - 2492599 + g 79 -9.4 -3.64703 | AATATACTTGTTGGT TCTGGAAA TGGC TTTCCAGA TTTCAGTAAGCGCCG TERM 2744 2494239 - 2494224 - g 80 -4.6 -5.21709 | opp_overlap 2494225 2494230, overlap 2494225 2494226 CTGCAGATGAAAAAA CTTCCC GCCC GGGAGG CAGGCATTTATGCGC Cthe_2097 2494077 - 2495120 + | hypothetical protein Cthe_2098 2495658 - 2495125 - | nucleoside recognition Cthe_2099 2496287 - 2495655 - | nucleoside recognition TERM 2745 2495876 - 2495856 - G 73 -6.9 -4.2461 | AGTTGCAGGAATAAA CTGAATACA GGA TGTGTTCAG AACGAGAAACATGCT Cthe_2100 2496719 - 2496958 + | AbrB family transcriptional regulator TERM 2746 2496989 - 2497044 + T 75 -4.9 -5.10601 | opp_overlap 2496993 2497007, overlap 2496999 2497002 2497007 AGTATAATTGTTAAA ATCAGTATAATTGCAAAAGGGACTT CGTAAA AAGTCCCTTTTGTGATTTTACGCAA TTTTTATGATTTTAT TERM 2747 2497040 - 2496993 - T 84 -10.8 -3.09718 | opp_overlap 2496989 2496999 2497002 2497007, overlap 2497007 TAATTGTTAAAATCA GTATAATTGCAAAAGGGACTTC GTAA AAAGTCCCTTTTGTGATTTTAC GCAATTTTTATGATT TERM 2748 2496999 - 2497034 + T 100 -12.1 -4.14615 | opp_overlap 2496993 2497007, overlap 2496989 2497002 2497007 TTAAAATCAGTATAA TTGCAAAAGGGACTT CGTAAA AAGTCCCTTTTGTGA TTTTACGCAATTTTT TERM 2749 2497002 - 2497031 + T 100 -13.8 -3.08776 | opp_overlap 2496993 2497007, overlap 2496999 2496989 2497007 AAATCAGTATAATTG CAAAAGGGACTT CGTAAA AAGTCCCTTTTG TGATTTTACGCAATT TERM 2750 2497026 - 2497007 - T 87 -8.6 -4.22338 | opp_overlap 2497002 2496999 2496989 2497007, overlap 2496993 AGTATAATTGCAAAA GGGACTTC GTAA AAAGTCCC TTTTGTGATTTTACG TERM 2751 2497007 - 2497026 + T 82 -7.9 -4.67635 | opp_overlap 2497007 2496993, overlap 2497002 2496999 2496989 AGTATAATTGCAAAA GGGACTT CGTAAA AAGTCCC TTTTGTGATTTTACG Cthe_2101 2497922 - 2497080 - | hypothetical protein TERM 2752 2497752 - 2497764 + g 78 -2.6 -5.36441 | GTTGTGTTCATAATA GCTC ACCAG GGGC TTTTTTATATCAAAG Cthe_2102 2498670 - 2497915 - | methyltransferase small Cthe_2103 2499151 - 2498969 - | 4Fe-4S ferredoxin, iron-sulfur binding Cthe_2104 2500159 - 2499284 - | PSP1 Cthe_2105 2501148 - 2500159 - | DNA polymerase III, delta prime subunit Cthe_2106 2501741 - 2501289 - | hypothetical protein Cthe_2107 2502506 - 2501823 - | thymidylate kinase TERM 2753 2502300 - 2502288 - G 80 -7.7 -4.4009 | GTCCACCGCATAAAA TGTGG AGG CCACA TAAGGACTTACATCA Cthe_2108 2503990 - 2502533 - | arginine decarboxylase TERM 2754 2502762 - 2502744 - G 70 -5.9 -4.36914 | overlap 2502746 TTTCTTTTTACAAAA CCGCTGT GCATG ACGGCGG CAGGCTCAACCCTTT Cthe_2109 2506800 - 2504263 - | copper amine oxidase-like protein TERM 2755 2505249 - 2505237 - G 74 -9.1 -3.53444 | CTATTTTGTTTGAAA CCGGA GCG TCCGG CTCGACCGTCAAAAC Cthe_2110 2507125 - 2507898 + | ABC transporter related protein Cthe_2111 2507888 - 2509945 + | hypothetical protein Cthe_2112 2509974 - 2510675 + | two component transcriptional regulator TERM 2756 2511616 - 2511652 + GF 71 -8.1 -3.31322 | opp_overlap 2511636 AATGTTGAATCCGAA TGGGGAAAAGGTTTTAC AAT GAAAATTCTTTTTCCCA TTGTAGACAATTCGC Cthe_2113 2510650 - 2511675 + | periplasmic sensor signal transduction histidine kinase TERM 2757 2512651 - 2512641 - g 74 -4.6 -4.90013 | opp_overlap 2512641 TAACTGAACGAAAAA CCCG CTA CGAG TTATTGTTTCTTTTG Cthe_2114 2511992 - 2513062 + | integrase catalytic subunit TERM 2758 2513455 - 2513471 + F 100 -10.1 -5.02231 | opp_overlap 2513455 TAAATTGGTATTTAA CCGCCTA TGT TGGGCGG TTTTTGCTGTTTTTA Cthe_2115 2513548 - 2513835 + | hypothetical protein TERM 2759 2514064 - 2514076 + GF 71 -7.7 -3.55548 | overlap 2514066 TTCTTTGCTCATGAG CAGCT TCA AGCTG TTTCGAAGCATATTC Cthe_2116 2513810 - 2514571 + | binding-protein-dependent transport systems inner membrane component Cthe_2117 2514578 - 2515606 + | putative sulfonate transport system substrate-binding protein Cthe_2118 2515699 - 2516451 + | ABC transporter related protein Cthe_2119 2518814 - 2516532 - | glycoside hydrolase family protein TERM 2760 2517600 - 2517617 + g 71 -4.9 -4.62471 | gap 1 ATTCTCTATCGGCTT GTTGCTGG AAT CCA-CAAC TTTTATCTGTACATT Cthe_2120 2519572 - 2518811 - | putative RNA polymerase sigma factor SigI Cthe_2121 2520648 - 2519731 - | hypothetical protein Cthe_2122 2520815 - 2521213 + | hypothetical protein Cthe_2123 2522622 - 2521210 - | hypothetical protein TERM 2761 2521416 - 2521431 + g 71 -6.1 -4.15565 | CGGCAAGCTTCACTT TCGGC ATTTGA GCCGA TTTTGCAATCCTAAG TERM 2762 2522128 - 2522139 + g 75 -3 -5.24129 | CGCATCATACACTCC TACA ATTT TGTA TTTTTTGTCCCCAAG TERM 2763 2523516 - 2523506 - R 79 -6.8 -4.72272 | CCCCTGCATTAAAAA GCTG CTC CAGC GACTCAAGCTCTTCT Cthe_2125 2524911 - 2524000 - | binding-protein-dependent transport systems inner membrane component Cthe_2126 2525796 - 2524942 - | binding-protein-dependent transport systems inner membrane component Cthe_2127 2526722 - 2525928 - | ATPase Cthe_2128 2528280 - 2526898 - | extracellular solute-binding protein TERM 2764 2528734 - 2528714 - R 100 -9 -5.9667 | overlap 2528706 AAAAACACAAAAAAA GGCTACCC TTTTC GGATAGCC TGCAATATGACAATG Cthe_2130 2530056 - 2528764 - | hypothetical protein Cthe_2131 2530466 - 2530098 - | hypothetical protein TERM 2765 2531406 - 2531381 - g 70 -7.7 -3.7614 | opp_overlap 2531387, overlap 2531384 AATTACCATCAATAA GGATAAGAGAA TACT TTCTCTTATAC AGTATAACGAAAATT TERM 2766 2531556 - 2531546 - g 73 -5.4 -4.57569 | opp_overlap 2531551 2531552, overlap 2531530 TGATTTTTTCAAAAA CAAG CTG CTTG TAATAAGCGATTTTA Cthe_2132 2530911 - 2532209 + | abortive infection protein, putative Cthe_2133 2532209 - 2532820 + | hypothetical protein TERM 2767 2533777 - 2533824 + T 70 -7.1 -3.60234 | gap 1 GTGCACTCTGTTGGA GGATGTCAAGGG-CGAGCGTAA GCGAG TTCATCTTGACCCTTGACATCC TTTGGACATATATCC TERM 2768 2533848 - 2533871 + T 82 -11 -2.53876 | opp_overlap 2533867 TATATCCTTTTGCTT TCCGGTCTGT TATG ACAGACCGGC TGCCTTCCGGTGAGG TERM 2769 2533895 - 2533909 + T 86 -11.4 -2.89 | overlap 2533893 GGTGAGGACGGGGTT TGGGGC GGA GCCCCA TAATTCTATACAACT Cthe_2135 2534751 - 2533915 - | integrase catalytic subunit Cthe_2136 2535067 - 2534774 - | transposase IS3/IS911 Cthe_2137 2535141 - 2537513 + | cellulosome enzyme, dockerin type I Cthe_2138 2537843 - 2539585 + | glycoside hydrolase family protein TERM 2770 2540517 - 2540507 - g 71 -6.8 -4.07687 | ATTTCGGCTCGAAAA GAGC CCA GCTC AGAGACCTTGCAAAA Cthe_2139 2539645 - 2542593 + | alpha-L-arabinofuranosidase B TERM 2771 2542656 - 2542616 - T 75 -8.3 -3.72695 | opp_overlap 2542619, overlap 2542619 AGTCCCGGTATGAAA TTAGCCTGTTAGAGACTTC GAA GCAGTTTCTAACAGGCTTT CTTACGTTTGCAGTA TERM 2772 2542619 - 2542653 + T 100 -16.6 -4.29326 | opp_overlap 2542619 2542616 CCCGGTATGAAATTA GCCTGTTAGAGACTTC GAA GCAGTTTCTAACAGGC TTTCTTACGTTTGCA TERM 2773 2542653 - 2542619 - T 100 -14.4 -2.96695 | opp_overlap 2542619, overlap 2542616 CCCGGTATGAAATTA GCCTGTTAGAGACTTC GAA GCAGTTTCTAACAGGC TTTCTTACGTTTGCA Cthe_2140 2544145 - 2542823 - | hypothetical protein Cthe_2141 2545732 - 2544545 - | metal-dependent phosphohydrolase TERM 2774 2545966 - 2545943 - R 100 -13.2 -3.53881 | overlap 2545941 ATCATAAATACAACA GCTGAATCCC TTGA GGGATCCAGC ACACGTTTCCATGCA Cthe_2142 2546854 - 2546255 - | recombination protein RecR Cthe_2143 2547227 - 2546886 - | hypothetical protein Cthe_2144 2548987 - 2547344 - | DNA polymerase III subunits gamma and tau TERM 2775 2549061 - 2549035 - H 85 -8.2 -4.70583 | opp_overlap 2549038, overlap 2549028 2549038 CTGACTAATATAAAA TAAGCTATTTAA TAA TTAAATAGCTTT CCACAACAATTTGAT TERM 2776 2549038 - 2549058 + H 84 -9.9 -3.5394 | opp_overlap 2549028 2549038 2549035 ACTAATATAAAATAA GCTATTTAA TAA TTAAATAGC TTTCCACAACAATTT TERM 2777 2549058 - 2549038 - H 93 -9.9 -4.45115 | opp_overlap 2549038, overlap 2549028 2549035 ACTAATATAAAATAA GCTATTTAA TAA TTAAATAGC TTTCCACAACAATTT TERM 2778 2549698 - 2549682 - H 74 -5.3 -4.89852 | GTATATGCAGAAAAA TTAAATA ATA TATTTAA AATTACCTGTTATAT TERM 2779 2550648 - 2550665 + H 72 -9.1 -2.71405 | overlap 2550647 AACGGAATATTTGCA GCCGTCG GTTA TGACGGC GTTATCATGTCTTCT Cthe_2146 2550952 - 2551293 + | copper amine oxidase-like protein Cthe_2147 2551539 - 2553521 + | glycoside hydrolase family protein TERM 2780 2553573 - 2553548 - T 100 -9.8 -4.7629 | opp_overlap 2553548 TCATTAATCTAAAAA GCTGTGGAAA ATGCAA CTTCCACAGC TTTTTTTACTTATTT TERM 2781 2553548 - 2553573 + T 100 -9.1 -5.73672 | opp_overlap 2553548 TCATTAATCTAAAAA GCTGTGGAA AATGCAAC TTCCACAGC TTTTTTTACTTATTT Cthe_2148 2554400 - 2553636 - | carbohydrate-binding, CenC-like protein Cthe_2149 2555737 - 2554448 - | hypothetical protein TERM 2782 2554839 - 2554823 - G 89 -9.5 -4.22407 | TATCAAAAGTACAAA CGGAAAA TCT TTTTCCG CAATCGTAACCCAAT TERM 2783 2555438 - 2555422 - G 76 -7.3 -4.13995 | TGTCGATAAACGAAA GCTCCTT AAA AAGAAGC AAATCTATCGGAGAA Cthe_2150 2557128 - 2555782 - | integral membrane protein-like protein TERM 2784 2556153 - 2556133 - G 72 -9.7 -2.94099 | TTTTTTCAGCAGATA TGCAAAGGC TAT GCCTATGCA AATTAAAAACAGTAT Cthe_2151 2559425 - 2557230 - | hypothetical protein TERM 2785 2558396 - 2558384 - G 85 -5.5 -5.20333 | CAGCCATAACAAAAA GCACT AAA AGCGC CGCTATAACCACCGC Cthe_2152 2560166 - 2559648 - | hypothetical protein TERM 2786 2559818 - 2559791 - G 72 -3.4 -5.13137 | overlap 2559795 2559798 CAAATAAATTAAAAA CAAATAAGACAG CATA CTGTCCCAACTG TTTAAAAATATTGAC TERM 2787 2559814 - 2559795 - G 77 -5 -5.00388 | overlap 2559791 2559798 TAAATTAAAAACAAA TAAGACAG CATA CTGTCCCA ACTGTTTAAAAATAT TERM 2788 2559811 - 2559798 - G 79 -6.7 -4.53857 | overlap 2559795 2559791 ATTAAAAACAAATAA GACAG CATA CTGTC CCAACTGTTTAAAAA Cthe_2153 2561592 - 2560522 - | integrase catalytic subunit TERM 2789 2560933 - 2560943 + g 74 -4.6 -4.90013 | opp_overlap 2560933 CAAAAGAAACAATAA CTCG TAG CGGG TTTTTCGTTCAGTTA TERM 2790 2562193 - 2562222 + G 79 -6.6 -4.49389 | overlap 2562195 2562213 AATTGGATGCGGCTT TGGTTTTTTGCT GGATGA GGCAAAAAACTA TTTTGATTATAGAAT Cthe_2154 2561861 - 2562736 + | methyltransferase type 11 Cthe_2155 2564890 - 2562995 - | S-layer-like domain-containing protein Cthe_2156 2565228 - 2564950 - | hypothetical protein Cthe_2157 2565614 - 2565282 - | hypothetical protein TERM 2791 2566720 - 2566745 + r 74 -6.1 -4.37092 | overlap 2566721 AAGATTTTAACGGGA AGTGCATGGCA AAGA TGCCGTGTACA TTTTATGAGAAACGT TERM 2792 2566721 - 2566744 + r 78 -9.6 -3.21934 | overlap 2566720 AGATTTTAACGGGAA GTGCATGGCA AAGA TGCCGTGTAC ATTTTATGAGAAACG TERM 2793 2567416 - 2567452 + r 100 -12.7 -3.70863 | opp_overlap 2567416, overlap 2567419 GTGTCCAAATAAAAA TAAGATTATAAGAAATA GCA TTTTTCTTATAATCTTA TTTCAATAATATATC TERM 2794 2567452 - 2567416 - R 100 -12.7 -5.27335 | opp_overlap 2567416 2567419 GTGTCCAAATAAAAA TAAGATTATAAGAAATA GCA TTTTTCTTATAATCTTA TTTCAATAATATATC TERM 2795 2567419 - 2567449 + r 90 -10 -3.98075 | opp_overlap 2567416, overlap 2567416 TCCAAATAAAAATAA GATTATAAGAAATA GCA TTTTTCTTATAATC TTATTTCAATAATAT Cthe_2159 2568438 - 2567578 - | hypothetical protein TERM 2796 2568478 - 2568494 + r 71 -2.3 -5.48825 | overlap 2568467 TTATTATAGATTTTT TATATAG TAT CTTTATA TTTTTTTGAATACTG Cthe_2160 2570883 - 2568490 - | hypothetical protein TERM 2797 2569027 - 2569040 + g 71 -3.9 -4.88388 | opp_overlap 2569027 GTAGAAATAAATTAC GTTAT TCAT ATAAC TTTTTATGCAATTAT TERM 2798 2570939 - 2570951 + r 79 -3.5 -5.54338 | TTTTATGGAACTCTT TATAA TTA TTATA TTTTTATTTTGATTA TERM 2799 2571181 - 2571150 - R 100 -11 -5.96894 | opp_overlap 2571150 2571152 ATTGAAACAAAAAAA TACGGGCAAAATCT GGAA AGACCTTACCCGTA CTTTTCAACAACTTT TERM 2800 2571541 - 2571524 - R 87 -5.5 -5.54264 | opp_overlap 2571524 AAAGATTCAAAAAAA GCGCC TTGAATTC GGCGC TTTATAAATAAACTC TERM 2801 2571638 - 2571651 + r 70 -4.5 -4.8487 | TCTTCTCCATGAAGT CGTCC TTAA GGATG TTATTTTTTTAGTGC Cthe_2161 2572747 - 2571866 - | hypothetical protein TERM 2802 2572844 - 2572869 + r 91 -7.7 -5.28281 | opp_overlap 2572864, overlap 2572864 TTTCGACTTATTTCT TGTGGCTTTTA ATTC TAAAAGCAACA TTTTGTTTCTTTTAT Cthe_2162 2573636 - 2572920 - | peptidase C26 TERM 2803 2573784 - 2573745 - R 83 -5.8 -5.26875 | CCCTCAATGAAAAAA GCGTCTTTCAGTCAAG CAAGAAAT CTCAACCCAAAGACGC AGTTATATTTTTAAA Cthe_2163 2574201 - 2573866 - | anti-sigma-factor antagonist TERM 2804 2574504 - 2574490 - R 74 -2.2 -5.62288 | TCAATAAAATAAAAA TAAAAC AAA ATTTTA TGGAAAATTGCACCT TERM 2805 2574846 - 2574865 + r 93 -9.2 -4.85433 | opp_overlap 2574846 ACATGTTATAAAAAA CGGGACTC TTTT GTGTCCCG TTTTTCAGTTTCTAT TERM 2806 2574865 - 2574846 - R 95 -9.2 -5.26918 | opp_overlap 2574846 ACATGTTATAAAAAA CGGGACTC TTTT GTGTCCCG TTTTTCAGTTTCTAT Cthe_2164 2575035 - 2574877 - | rubredoxin-type Fe(Cys)4 protein Cthe_2165 2575780 - 2575187 - | hypothetical protein Cthe_2166 2576033 - 2577169 + | putative PAS/PAC sensor protein Cthe_2167 2578312 - 2577170 - | glycoside hydrolase family protein TERM 2807 2578436 - 2578413 - R 70 -4.4 -4.86033 | overlap 2578415 AAATCTGCATAAAAA CAGGGAGGCC CGAA AGCCTCCCAT TAAAAATCCATGTCC TERM 2808 2578434 - 2578415 - R 100 -11.4 -4.04397 | overlap 2578413 ATCTGCATAAAAACA GGGAGGCC CGAA AGCCTCCC ATTAAAAATCCATGT Cthe_2168 2580653 - 2578458 - | peptidase TERM 2809 2578781 - 2578798 + g 73 -5.5 -4.65895 | overlap 2578783 GCTCTTCGGTCTCGT CGTCGCT GCTT AGCGAAG TTTTTCCGTAGAACG Cthe_2169 2581593 - 2580772 - | metallophosphoesterase TERM 2810 2582592 - 2582573 - g 79 -9.3 -3.9642 | opp_overlap 2582573, overlap 2582563 AAAGACGGAAGCAAA GCATGGG TCAACG CCCATGC TTTCAACAGCTACAT TERM 2811 2582573 - 2582592 + G 79 -10 -3.54543 | opp_overlap 2582573 2582563 AAAGACGGAAGCAAA GCATGGGT CAAC GCCCATGC TTTCAACAGCTACAT Cthe_2170 2581757 - 2582866 + | hypothetical protein Cthe_2171 2585872 - 2582903 - | type III restriction enzyme, res subunit TERM 2812 2586029 - 2585994 - R 95 -5.6 -6.20267 | overlap 2585998 GCAAAAAGAAAAAAA TAAATAAGAGGACTAA ATAC TTAATCCCCTCATTTT ATAATATTGATAAAT TERM 2813 2586025 - 2585998 - R 88 -6.4 -5.36181 | overlap 2585994 AAAGAAAAAAATAAA TAAGAGGACTAA ATAC TTAATCCCCTCA TTTTATAATATTGAT Cthe_2172 2586280 - 2586068 - | 50S ribosomal protein L31P TERM 2814 2586296 - 2586332 + r 80 -7.5 -4.32651 | opp_overlap 2586307, overlap 2586284 CTTCTTTCATAAACC TTTTGTGAAAATGCATT TCC GACGCATTTTCGTAAAA TTTTCATAAATTATT Cthe_2173 2587624 - 2586512 - | integrase catalytic subunit Cthe_2174 2589610 - 2587649 - | transcription termination factor Rho Cthe_2175 2590794 - 2590126 - | hypothetical protein Cthe_2176 2591107 - 2591985 + | abortive infection protein TERM 2815 2592165 - 2592139 - g 80 -4.4 -5.32565 | overlap 2592140 CAACGAATTAAAAAA CCAGCTTAAAGC AGA ACTTAAAGCCGA ATTGGAAGCCGAGCT Cthe_2177 2592107 - 2592304 + | hypothetical protein TERM 2816 2592341 - 2592358 + F 74 -9.1 -3.09787 | overlap 2592340 TAGTAATCTGTGCGA TGGGGGG CTTT TCCCCCA CTTTGTATAATTTGC Cthe_2178 2592430 - 2592891 + | hypothetical protein TERM 2817 2593033 - 2592993 - T 83 -10.6 -3.33744 | opp_overlap 2593000, overlap 2592959 2593000 TTTCGTTTCAAAAAC GGAAAAACCCTCACAGCT TAAAT AACTGTAAGGGTTTTCGC AATTGGAGCTGGTGG TERM 2818 2593026 - 2593000 - T 100 -9.5 -4.92239 | opp_overlap 2593000, overlap 2592993 TCAAAAACGGAAAAA CCCTCACAGCT TAAAT AACTGTAAGGG TTTTCGCAATTGGAG TERM 2819 2593313 - 2593299 - T 93 -8.6 -4.74103 | TGGGGAACTTAAAAA GAGATG CCT CATCTC TAGACACCTCTTTTG Cthe_2179 2596116 - 2593348 - | Pectate lyase/Amb allergen TERM 2820 2593430 - 2593459 + g 76 -2.2 -5.51353 | gap 2, overlap 2593432 2593433 TGCAATACAATTTTC GC-CGGA-TTACCG TTGC CGGTAAATCCATGC TTTTTATTGTTTTTA TERM 2821 2596478 - 2596507 + H 74 -5.8 -4.56153 | gap 1, opp_overlap 2596479, overlap 2596475 2596479 2596479 ATAAAAAATAAAAAA ACC-CTGTAATCC AAAAA GGATTACAGAGGA TTGTTTTTATGGTGG TERM 2822 2596479 - 2596506 + H 77 -9.3 -3.32607 | gap 1, opp_overlap 2596479, overlap 2596479 2596478 2596475 TAAAAAATAAAAAAA CC-CTGTAATCC AAAAA GGATTACAGAGG ATTGTTTTTATGGTG TERM 2823 2596479 - 2596505 + H 74 -9.5 -2.5848 | opp_overlap 2596479, overlap 2596478 2596475 2596479 TAAAAAATAAAAAAA CCCTGTAATCC AAAAA GGATTACAGAG GATTGTTTTTATGGT TERM 2824 2596505 - 2596479 - H 100 -11.7 -6.28401 | opp_overlap 2596479 2596479 2596478 2596475 TAAAAAATAAAAAAA CCCTGTAATCC AAAAA GGATTACAGAG GATTGTTTTTATGGT Cthe_2180 2596971 - 2598278 + | Cl- channel, voltage gated Cthe_2181 2598692 - 2599405 + | ATPase TERM 2825 2601054 - 2601043 - g 75 -3 -5.35224 | overlap 2601047 TTGAGAAAAATAAAA TTAC TGCC GTAA AACCCGGCACCGGAT TERM 2826 2601180 - 2601164 - g 86 -4.4 -5.45802 | TTTCGAAAAGAAAAA CGGTTC ATTTG AAACCG TGCCTGCGAATTTGC TERM 2827 2601449 - 2601473 + G 73 -7.8 -3.93288 | TTTCACCAGGGACCT TACCTGGACC GGATG GGGCCGGGTA TTTGCTTCACTGAGA TERM 2828 2601840 - 2601815 - g 74 -6.1 -4.33928 | opp_overlap 2601837, overlap 2601837 CATCTCAAACATAAA CACCAATACCC ACGT GGATATAGGCG GGACCCGACTGATTA TERM 2829 2602158 - 2602133 - g 76 -9 -3.78775 | TGTTGCAGGATTAAA CATTGGCGGG CTTACT CCCGACAATG CGAAAAACGTAAAAT Cthe_2182 2599446 - 2602235 + | Ig-like, group 2 TERM 2830 2602292 - 2602346 + T 79 -8.3 -3.97388 | gap 2, opp_overlap 2602294, overlap 2602284 2602283 2602294 CAATCCGCTGCAATA AATTATTGCCGATTTAATCCAAGGC GCTGAAA GTC-TGG-TTAAATCGGCAATAATG TTTATCATACAGTGT TERM 2831 2602294 - 2602344 + T 89 -10.9 -3.57674 | gap 2, opp_overlap 2602294, overlap 2602284 2602283 2602292 ATCCGCTGCAATAAA TTATTGCCGATTTAATCCAAGGC GCTGAAA GTC-TGG-TTAAATCGGCAATAA TGTTTATCATACAGT TERM 2832 2602344 - 2602294 - T 82 -8.7 -4.15222 | gap 2, opp_overlap 2602284 2602283 2602294 2602292 ATCCGCTGCAATAAA TTATTGCCGATTTAATCCAAGGC GCTGAAA GTCT-GG-TTAAATCGGCAATAA TGTTTATCATACAGT Cthe_2183 2603312 - 2602443 - | UDP-glucose pyrophosphorylase TERM 2833 2603277 - 2603265 - G 73 -7.7 -3.85698 | TGTGGCGGGTAGAAA TCTGG TTC CCAGA CCTGCTGCAGGAATT Cthe_2184 2603534 - 2604364 + | putative ribonuclease BN TERM 2834 2604415 - 2604389 - T 100 -7.3 -6.01187 | opp_overlap 2604389 AAGCAAACAAAAAAA CAGCCCGCA AACTCCAAA TGCAGGCTG CTTTTATTTTTCATC rpsR 2604718 - 2604434 - | 30S ribosomal protein S18 Cthe_2186 2605200 - 2604784 - | single-strand binding protein TERM 2835 2604882 - 2604898 + g 72 -9.5 -3.01745 | CCATTCCCTGGCTCT TTTTGCC CTC GGCAAAA TATAATTCTTCCGCA Cthe_2187 2605497 - 2605210 - | SSU ribosomal protein S6P Cthe_2188 2606886 - 2605816 - | integrase catalytic subunit TERM 2836 2606227 - 2606237 + g 74 -4.6 -4.90013 | opp_overlap 2606227 CAAAAGAAACAATAA CTCG TAG CGGG TTTTTCGTTCAGTTA Cthe_2189 2607494 - 2608741 + | diguanylate cyclase with GAF sensor Cthe_2190 2609894 - 2608713 - | N-acetylglucosamine 6-phosphate deacetylase TERM 2837 2611843 - 2611825 - g 70 -3 -5.02323 | CCATGATAAACAAAA TGCCGGGA GAT TACTGGCA AAAGTTTGCGGGCCT Cthe_2191 2610189 - 2612402 + | 1,4-alpha-glucan branching enzyme TERM 2838 2612410 - 2612457 + F 100 -15.8 -2.62184 | opp_overlap 2612413, overlap 2612413 2612456 AGGATTAACTCTAAT TAATTGCCACTTTGACCGGGCT TCTC AACCAGGTTGAAGTGGCAATTA TAATATCACGAAGCC TERM 2839 2612454 - 2612413 - f 87 -10.9 -3.37879 | opp_overlap 2612413 2612410 ATTAACTCTAATTAA TTGCCACTTTGACCGGGCT TCTC AACCAGGTTGAAGTGGCAA TTATAATATCACGAA TERM 2840 2612413 - 2612454 + F 100 -13.1 -3.46602 | opp_overlap 2612413, overlap 2612410 ATTAACTCTAATTAA TTGCCACTTTGACCGGGCT TCTC AACCAGGTTGAAGTGGCAA TTATAATATCACGAA TERM 2841 2613060 - 2613046 - g 85 -5.8 -5.25735 | TGAAAAAAGTAAAAA TTTTGA CTA TCAAAA TAAAAATATATTTGA Cthe_2192 2612702 - 2613292 + | hypothetical protein TERM 2842 2613615 - 2613597 - T 70 -4.6 -4.84642 | overlap 2613588 TTTAAAGGAAGAAAA TTCCCT TGGGTAT AGGGAA AAGGAAGAGGCGACA TERM 2843 2613658 - 2613622 - T 95 -12.4 -3.70676 | opp_overlap 2613632, overlap 2613618 TATAGGGAAAAGGAA GAGGCGACAAGAAAAG GTTTT CTGCTCTTATCGCCTC AACTGTCAAAATGTT Cthe_2193 2616579 - 2613733 - | carbohydrate-binding family 6 protein TERM 2844 2615784 - 2615798 + g 70 -7.8 -3.72893 | CCTTTAAAAGTTCCT CCACCG CAA TGGTGG TTTCCTGCCAACCTG Cthe_2194 2618157 - 2616652 - | carbohydrate-binding family 6 protein Cthe_2195 2621176 - 2618279 - | carbohydrate-binding family 6 protein Cthe_2196 2622804 - 2621203 - | carbohydrate-binding family 6 protein TERM 2845 2622154 - 2622187 + g 79 -5.9 -4.89009 | opp_overlap 2622154 2622157, overlap 2622157 GTTACGCTTGTAAAA CCACGGACCTTCTTC ATAG GAAGTCGGTCTGTCG TTTTTGCTTCGCTGT Cthe_2197 2625607 - 2622821 - | carbohydrate-binding family 6 protein Cthe_2198 2625668 - 2627152 + | transposase TERM 2846 2627340 - 2627319 - g 90 -11.6 -3.79906 | opp_overlap 2627339 TCAGCGGGAGAATAA CCGGATCC AGAGAG GGATCCGG CAAGCAGGCTTTCCT Cthe_2199 2627152 - 2627910 + | IstB-like ATP-binding protein Cthe_2200 2628305 - 2627970 - | hypothetical protein Cthe_2201 2630102 - 2628882 - | transposase, mutator type TERM 2847 2629364 - 2629339 - G 74 -6.1 -4.37092 | overlap 2629340 ACGTTTCTCATAAAA TGTACACGGCA TCTT TGCCATGCACT TCCCGTTAAAATCTT TERM 2848 2629363 - 2629340 - G 73 -9.6 -3.21934 | overlap 2629339 CGTTTCTCATAAAAT GTACACGGCA TCTT TGCCATGCAC TTCCCGTTAAAATCT Cthe_2202 2630989 - 2630252 - | hypothetical protein TERM 2849 2631032 - 2631076 + r 95 -11.6 -3.86015 | gap 1, opp_overlap 2631040, overlap 2631038 2631040 GTTTTAGACGGGTTT TGTGAAAATGAGCCAAGAGGA ACCA TCCTCCTGGCTCATCTTC-CG TTTATGAGAGCCATA TERM 2850 2631038 - 2631071 + r 90 -12.5 -3.32997 | opp_overlap 2631040, overlap 2631032 2631040 GACGGGTTTTGTGAA AATGAGCCAAGAGGA ACCA TCCTCCTGGCTCATC TTCCGTTTATGAGAG TERM 2851 2631040 - 2631069 + r 100 -15.1 -3.23047 | opp_overlap 2631040, overlap 2631038 2631032 CGGGTTTTGTGAAAA TGAGCCAAGAGGA ACCA TCCTCCTGGCTCA TCTTCCGTTTATGAG TERM 2852 2631069 - 2631040 - R 100 -17.3 -4.07568 | opp_overlap 2631038 2631032 2631040 CGGGTTTTGTGAAAA TGAGCCAAGAGGA ACCA TCCTCCTGGCTCA TCTTCCGTTTATGAG folE 2631630 - 2631067 - | GTP cyclohydrolase I TERM 2853 2631733 - 2631746 + r 84 -5.3 -5.38054 | ACTTATTCAACATTG TAACG ACAC CGTTA TTTTTCTTTATAACA TERM 2854 2631801 - 2631784 - R 79 -4.9 -5.24799 | TCATAAATAGAAAAA GGACAAA ACTT TTTATCC AACATTCTGAATTAC Cthe_2204 2634444 - 2631796 - | cyanophycin synthetase Cthe_2205 2635294 - 2634485 - | cyanophycinase Cthe_2206 2635696 - 2635400 - | hypothetical protein Cthe_2207 2636900 - 2635725 - | isoaspartyl dipeptidase TERM 2855 2637604 - 2637614 + G 71 -6.8 -4.10934 | GCCTGTTCCCGGAAG GCAG CGA CTGC TTTATAATTGATTGT Cthe_2208 2637297 - 2637884 + | LexA DNA-binding region containing protein TERM 2856 2637935 - 2637898 - T 100 -20.3 -3.30635 | opp_overlap 2637898, overlap 2637904 GAAATCCTTGTATAA TGTAAAGGGTCTAAATA ATAT TATTTAGACCCTTTACA TTTATATCATACAAC TERM 2857 2637898 - 2637935 + T 100 -20.3 -4.08706 | opp_overlap 2637898 2637904 GAAATCCTTGTATAA TGTAAAGGGTCTAAATA ATAT TATTTAGACCCTTTACA TTTATATCATACAAC TERM 2858 2637929 - 2637904 - T 100 -13.5 -3.80625 | opp_overlap 2637898, overlap 2637898 CTTGTATAATGTAAA GGGTCTAAATA ATAT TATTTAGACCC TTTACATTTATATCA Cthe_2209 2639091 - 2638003 - | 3-isopropylmalate dehydrogenase TERM 2859 2638829 - 2638815 - G 70 -7.8 -3.65046 | opp_overlap 2638815 CGCGTATTCCAAGAA GACCCG CTT CAGGTC TTTTGTCCCCCGGAA TERM 2860 2638815 - 2638829 + g 70 -5.6 -4.36914 | opp_overlap 2638815 CGCGTATTCCAAGAA GACCCG CTT CAGGTC TTTTGTCCCCCGGAA Cthe_2210 2639662 - 2639093 - | 3-isopropylmalate dehydratase, small subunit Cthe_2211 2640911 - 2639652 - | 3-isopropylmalate dehydratase large subunit TERM 2861 2641035 - 2641045 + r 74 -4 -5.1925 | TCCTAATTTAAGAGC CATT TTT AATG TTTTTTGACTTGTAC Cthe_2212 2641948 - 2641040 - | AraC family transcriptional regulator Cthe_2213 2642613 - 2641996 - | hypothetical protein TERM 2862 2642258 - 2642270 + g 74 -6.3 -4.44046 | overlap 2642264 GTAACACCAAATCCG GACTT TGA AAGTC TTTCTTTAAGCTCAC TERM 2863 2642748 - 2642767 + H 74 -2.2 -5.66989 | CATTCCTTTCTATTC CAAATTCA AAAA TAAATTTG TTTTTTTCATATTTA Cthe_2214 2642982 - 2643923 + | hypothetical protein Cthe_2215 2644867 - 2643920 - | Mg2+ transporter protein, CorA-like protein TERM 2864 2644494 - 2644510 + g 82 -3.8 -5.37345 | opp_overlap 2644494, overlap 2644486 CTTGTCTTTTTAAAA GTAAAA TAATC TTTTAC TTTTTTGTCCTTGAA TERM 2865 2644965 - 2644948 - R 87 -5.6 -5.65927 | opp_overlap 2644948 TACCCAAATAAAAAA CTTCCA TACGAG TGGAAG TTATAAAGCCCATTA TERM 2866 2645277 - 2645261 - R 100 -10.1 -5.56372 | AAAGCAAAATAAAAA CCCCGGA AAA TCCGAGG TCCAAAACTATTTCT Cthe_2216 2645773 - 2645285 - | hypothetical protein Cthe_2217 2646188 - 2645784 - | flagellar protein FliS Cthe_2218 2648769 - 2646253 - | flagellar hook-associated 2-like protein TERM 2867 2648058 - 2648042 - G 71 -3.7 -4.96646 | opp_overlap 2648042, overlap 2648036 GTATATAATGAAAAA TCGGA GTTTACA TCCGA ATTTCCTGTAATGAA Cthe_2219 2649170 - 2648775 - | flagellar protein FlaG protein Cthe_2220 2650178 - 2649234 - | NAD-dependent epimerase/dehydratase Cthe_2221 2651363 - 2650194 - | DegT/DnrJ/EryC1/StrS aminotransferase Cthe_2222 2652486 - 2651422 - | glycosyltransferase 28-like protein Cthe_2223 2653179 - 2652496 - | LmbE-like protein TERM 2868 2653008 - 2653018 + g 70 -3.2 -4.84761 | TCTGACTTTTCAGCT CACT TAA GGTG TTTTTGTCCCAATCT Cthe_2224 2653864 - 2653172 - | putative methionyl-tRNA formyltransferase Cthe_2225 2654301 - 2653891 - | methylmalonyl-CoA epimerase Cthe_2226 2655944 - 2654298 - | FkbH like protein TERM 2869 2655108 - 2655126 + g 91 -10.4 -4.64861 | TAAATCCCTTATATT TTGGGATT TCA AATCCCAA TTTATTTTCAGCGCG Cthe_2227 2656165 - 2655950 - | phosphopantetheine-binding Cthe_2228 2656782 - 2656171 - | MaoC-like dehydratase Cthe_2229 2657816 - 2656764 - | N-acetylneuraminate synthase Cthe_2230 2658614 - 2657874 - | acylneuraminate cytidylyltransferase Cthe_2231 2659290 - 2658646 - | methyltransferase type 11 TERM 2870 2659337 - 2659363 + r 70 -8.2 -3.10537 | overlap 2659334 2659340 TCTGTTTTTCATTTT TAAGTTTAAAAG TTT CTTTTAAGCTTG TATAATTTTAAAATC TERM 2871 2659340 - 2659360 + r 73 -7.7 -3.68757 | overlap 2659334 2659337 GTTTTTCATTTTTAA GTTTAAAAG TTT CTTTTAAGC TTGTATAATTTTAAA Cthe_2232 2660415 - 2659417 - | polysaccharide biosynthesis protein CapD TERM 2872 2660303 - 2660332 + g 71 -6.5 -4.2803 | gap 1, overlap 2660305 AACTGCTTGTACTCG TCTCTGCTGTAAAC TCT GATTACGGCAG-GA TTTTCAGTTAGAATA Cthe_2233 2661814 - 2660402 - | hypothetical protein Cthe_2234 2662178 - 2661795 - | hypothetical protein Cthe_2235 2664106 - 2662160 - | hypothetical protein TERM 2873 2664098 - 2664121 + g 100 -13.8 -5.80364 | opp_overlap 2664098 AAATGTTTTAAAAAA GGCCGGCAAG AATC CCTGCCGGCC TTTTTTTGTTAAGAT TERM 2874 2664121 - 2664098 - G 100 -16 -5.03747 | opp_overlap 2664098 AAATGTTTTAAAAAA GGCCGGCAAG AATC CCTGCCGGCC TTTTTTTGTTAAGAT Cthe_2236 2664988 - 2664170 - | flagellin-like protein Cthe_2237 2665882 - 2665061 - | flagellin-like protein TERM 2875 2665952 - 2665993 + r 71 -7.5 -3.39803 | gap 1, opp_overlap 2665952 TTTGGTGCAAGGATA TGGCCTTTTATCTATTCGGC GCC GCT-AATAGATAAATTGCCA TTATCCCTGTACATC Cthe_2238 2667518 - 2666100 - | aldehyde dehydrogenase TERM 2876 2667335 - 2667323 - G 88 -9.1 -4.63218 | opp_overlap 2667323 2667322 TTTCGGTTAATAAAA CCTCC TCC GGAGG CTTTCTCAAATCGTT TERM 2877 2667435 - 2667456 + g 87 -6.5 -5.19328 | TCTCTCATCTATACT CGATGTGCG AAGC CGTACAACG TTTTTCTTCTGCAAT Cthe_2239 2667957 - 2667730 - | carbon storage regulator, CsrA Cthe_2240 2668408 - 2667929 - | flagellar assembly protein FliW TERM 2878 2667994 - 2668012 + gr 73 -9 -2.93382 | opp_overlap 2667996 2667998, overlap 2667988 2667996 2667998 GGAGCTCTTCTATTA TATAGTGT CTC ACACTATA TCTATCCGTGTCAAG Cthe_2241 2669016 - 2668438 - | hypothetical protein flgL 2669968 - 2669060 - | flagellar hook-associated protein FlgL Cthe_2243 2671568 - 2670009 - | flagellar hook-associated protein FlgK Cthe_2244 2673044 - 2671575 - | flagellar hook-associated protein FlgK TERM 2879 2671745 - 2671758 + g 71 -6.7 -4.11773 | opp_overlap 2671745, overlap 2671757 CCTCTGCCGAATTTA CCAGA GTCC TCTGG TTTTCAGCCGTCTTT Cthe_2245 2673564 - 2673064 - | hypothetical protein Cthe_2246 2673971 - 2673678 - | anti-sigma-28 factor, FlgM Cthe_2247 2674647 - 2674204 - | regulatory protein, MerR TERM 2880 2674273 - 2674294 + g 79 -9.5 -3.63839 | CGATGTCTTTTTCTT GTCGGTATC ACCG GATACTGAC TTGCTTATTTCCTGC Cthe_2248 2675414 - 2674752 - | phosphoribosyltransferase Cthe_2249 2677648 - 2675408 - | ATP-dependent RecD/TraA family DNA helicase Cthe_2250 2678136 - 2677732 - | hypothetical protein TERM 2881 2678199 - 2678251 + r 100 -15 -2.8541 | opp_overlap 2678206, overlap 2678206 ACAGGTGCTTATTTT CAAAAAACAGGCCAAAGCAGACAA ATTTA TCGTCCGCTTCGGCCTGTTTATTG CTTACTTTATTTGCT TERM 2882 2678244 - 2678206 - R 100 -18.3 -5.03314 | opp_overlap 2678199 2678206 CTTATTTTCAAAAAA CAGGCCAAAGCAGACAA ATTTA TCGTCCGCTTCGGCCTG TTTATTGCTTACTTT TERM 2883 2678206 - 2678244 + r 100 -11.7 -4.37247 | opp_overlap 2678206, overlap 2678199 CTTATTTTCAAAAAA CAGGCCAAAGCAGACAA ATTTA TCGTCCGCTTCGGCCTG TTTATTGCTTACTTT Cthe_2251 2679585 - 2678392 - | methionine adenosyltransferase TERM 2884 2679529 - 2679495 - G 70 -2.6 -5.0133 | opp_overlap 2679496, overlap 2679496 GATCCTGCGAAAAAA TTGCGTCCAGAACGGC ATC GGAGATCTGGTCGCAT ATTTTATCGGGATGG TERM 2885 2679633 - 2679651 + r 74 -8.8 -3.28924 | opp_overlap 2679625 2679630 CGATAAACAACACCC GTTGCTGC ATT GCCGCAAC TTGTCGAAAAAACTG TERM 2886 2679682 - 2679708 + r 74 -2.3 -5.67967 | opp_overlap 2679686 2679701, overlap 2679685 2679686 ACAAAATAACATAAA AAAACCTCTTT CACAC AAAGAGGATTC TTTTTTTATCCTCAT TERM 2887 2679686 - 2679704 + r 71 -7.5 -3.51806 | opp_overlap 2679686 2679701, overlap 2679685 2679682 AATAACATAAAAAAA CCTCTTT CACAC AAAGAGG ATTCTTTTTTTATCC TERM 2888 2679704 - 2679686 - R 100 -7.5 -5.86465 | opp_overlap 2679686 2679685 2679682, overlap 2679701 AATAACATAAAAAAA CCTCTTT CACAC AAAGAGG ATTCTTTTTTTATCC Cthe_2252 2680340 - 2679936 - | thioesterase superfamily protein TERM 2889 2680475 - 2680455 - R 86 -4 -5.77856 | AATAAAGTAAAAAAA GAGACAGT TTATC ACCATCTC TTTTCAGAAAGCTGT Cthe_2253 2682307 - 2680508 - | ATP-dependent metalloprotease FtsH Cthe_2254 2682989 - 2682435 - | hypoxanthine phosphoribosyltransferase Cthe_2255 2684555 - 2683143 - | tRNA(Ile)-lysidine synthetase Cthe_2256 2685908 - 2684571 - | primary replicative DNA helicase Cthe_2257 2686408 - 2685962 - | 50S ribosomal protein L9P Cthe_2258 2688464 - 2686455 - | phosphoesterase, RecJ-like protein Cthe_2259 2688831 - 2688490 - | hypothetical protein Cthe_2260 2689799 - 2688963 - | prephenate dehydratase Cthe_2261 2690184 - 2690510 + | hypothetical protein TERM 2890 2691715 - 2691705 - g 71 -4 -4.85267 | opp_overlap 2691708 AGAAAGTACGAAAAA GTTT ATG AAAC TCATGGTTTACTGTG TERM 2891 2691897 - 2691928 + G 70 -3.1 -4.89009 | gap 1, opp_overlap 2691897 2691898 AGTTCGGGCTGCAAA CCTTATCAAGGATA AAAAA TA-CCTTGATGCGG TTTTTGATTCGCTGT TERM 2892 2692285 - 2692295 + G 71 -6.8 -4.09511 | opp_overlap 2692275, overlap 2692275 ATAATTGCCGTAGTC GCCA TTC TGGC TTTTGGACACCTGTT Cthe_2262 2690497 - 2692452 + | V-type ATPase, 116 kDa subunit Cthe_2263 2692469 - 2692936 + | V-type ATP synthase subunit K TERM 2893 2692961 - 2692951 - f 88 -6.8 -5.17744 | overlap 2692952 AGATATTAATAAAAA GGGA GTG TCCC CATGGCAGGAGTGGA TERM 2894 2693401 - 2693389 - g 85 -2.7 -5.7827 | AACATAAACAAAAAA CTTTC ACA AAAAG GTATTGACGGGAAAA Cthe_2264 2692963 - 2693559 + | H+-transporting two-sector ATPase, E subunit TERM 2895 2694310 - 2694296 - g 71 -7.2 -3.85539 | opp_overlap 2694296, overlap 2694285 CACATCGACATCAAA GTTTTC ATT GAAAAC TTTGACGCCCCCCTG Cthe_2265 2693597 - 2694616 + | V-type ATP synthase subunit C Cthe_2266 2694609 - 2694929 + | V-type ATP synthase subunit F TERM 2896 2694955 - 2694973 + F 70 -6.2 -4.30231 | opp_overlap 2694953 2694955 2694959, overlap 2694959 ACCACATAAATAACA TAAATAAT TTA ATTATTTA TTTGTGTTAATTATT TERM 2897 2695422 - 2695408 - g 82 -4.2 -5.44119 | CCTACCGTAAAAAAA GGTGAC AAA GTAACC GCCGGCGATGTAATA TERM 2898 2696475 - 2696493 + G 72 -10.3 -2.55351 | overlap 2696474 AGTCGGTGTTGACGC CCTGTCG CCGTC CGACAGG CTTACTCTGGAAGCC Cthe_2267 2695033 - 2696802 + | V-type ATP synthase subunit A Cthe_2268 2696804 - 2698186 + | V-type ATP synthase subunit B Cthe_2269 2698284 - 2698952 + | V-type ATP synthase subunit D TERM 2899 2699004 - 2698967 - T 89 -9.2 -4.37198 | gap 1, opp_overlap 2698967 AAGGTAAAGTTAAAA CCGCCTGCC-ACTGAAA CATTT TTAGAGTTGGCAGGCGG TTTGTTTACATATTC TERM 2900 2698967 - 2699004 + T 89 -9.2 -4.49906 | gap 1, opp_overlap 2698967 AAGGTAAAGTTAAAA CCGCCTGCC-ACTGAAA CATTT TTAGAGTTGGCAGGCGG TTTGTTTACATATTC Cthe_2270 2700632 - 2699010 - | ABC transporter related protein TERM 2901 2700768 - 2700756 - R 74 -7.7 -3.88232 | opp_overlap 2700755 2700756 TCCGGCACAGAACAA GAGCA TTA TGCTC CTTTTTCAAAAACAA TERM 2902 2700937 - 2700904 - R 100 -16.1 -5.58454 | opp_overlap 2700904 GTTACATTAAAAAAA TTCCCTCCGGACGGA AAGG TTCGTCCGAAGGGAA TTTCCAAAATGCTGC TERM 2903 2700904 - 2700937 + r 100 -16.1 -3.56092 | opp_overlap 2700904 GTTACATTAAAAAAA TTCCCTCCGGACGGA AAGG TTCGTCCGAAGGGAA TTTCCAAAATGCTGC Cthe_2271 2701511 - 2700975 - | cellulosome enzyme, dockerin type I Cthe_2272 2701941 - 2702855 + | hypothetical protein Cthe_2273 2702860 - 2703981 + | hypothetical protein Cthe_2274 2704892 - 2704272 - | hypothetical protein Cthe_2275 2706144 - 2705197 - | hypothetical protein TERM 2904 2705684 - 2705700 + g 79 -6.6 -4.58585 | opp_overlap 2705682 2705684 GTGTTGAAATAAACA GTCCTT AAAAA AAGGAC TTTATTATTTAAATC Cthe_2276 2706755 - 2707933 + | AAA ATPase, central region TERM 2905 2707956 - 2707979 + T 80 -5.3 -5.26316 | opp_overlap 2707959, overlap 2707959 CTTGAAGTAACCAAA AAAGAGGGA CAAAAA TCCCTCTTA TTTTTTCTCAAATAG TERM 2906 2707976 - 2707959 - T 100 -7.7 -5.32565 | opp_overlap 2707956 2707959 GAAGTAACCAAAAAA GAGGGAC AAAA ATCCCTC TTATTTTTTCTCAAA TERM 2907 2707959 - 2707976 + T 79 -7 -4.72201 | opp_overlap 2707959, overlap 2707956 GAAGTAACCAAAAAA GAGGGA CAAAAA TCCCTC TTATTTTTTCTCAAA Cthe_2277 2708804 - 2707977 - | hypothetical protein Cthe_2278 2709129 - 2709992 + | extracellular solute-binding protein Cthe_2279 2710027 - 2710737 + | polar amino acid ABC transporter, inner membrane subunit Cthe_2280 2710721 - 2711545 + | ABC transporter related protein Cthe_2281 2712653 - 2711568 - | response regulator receiver modulated CheB methylesterase TERM 2908 2712626 - 2712616 - G 70 -5.4 -4.3739 | CATCTTCGCATAAAA GATG AGT CATC CACCACTAATACTCC Cthe_2282 2713465 - 2712653 - | MCP methyltransferase, CheR-type TERM 2909 2713524 - 2713495 - R 77 -8.7 -3.65812 | gap 1 GCCTCCCTAATACAA TCTGTGGAGAGGCA TAA TGCCTCTCCA-ATA CAAACAATAATGGTT Cthe_2283 2718056 - 2713629 - | methyl-accepting chemotaxis sensory transducer TERM 2910 2715871 - 2715907 + g 79 -5.2 -5.02476 | opp_overlap 2715880, overlap 2715863 2715873 AGAAGATTTGTCTGC TCGGCAATATCATCAA TGACT TCGATGATACTGCCTA TTTTTTCGGAGCTCT TERM 2911 2715873 - 2715905 + g 77 -7.8 -4.13963 | opp_overlap 2715880, overlap 2715863 2715871 AAGATTTGTCTGCTC GGCAATATCATCAA TGACT TCGATGATACTGCC TATTTTTTCGGAGCT Cthe_2284 2720199 - 2718091 - | CheA signal transduction histidine kinases Cthe_2285 2720639 - 2720214 - | CheW protein TERM 2912 2721863 - 2721846 - g 85 -7.1 -4.95487 | opp_overlap 2721846 AAAAGAAATAGAAAA TTATGTG AAAA CACATAA TTTATCGCAAGAAGA TERM 2913 2721846 - 2721863 + G 71 -7.1 -3.85698 | opp_overlap 2721846 AAAAGAAATAGAAAA TTATGTG AAAA CACATAA TTTATCGCAAGAAGA TERM 2914 2721896 - 2721879 - g 70 -8.5 -3.40611 | opp_overlap 2721870 2721871 TTTATCGCAAGAAGA TTGCTTG TTCT CAAGCAA AAAAGGCGGGCATAT Cthe_2286 2721580 - 2722146 + | phage integrase TERM 2915 2722153 - 2722193 + F 74 -5.5 -4.77173 | opp_overlap 2722158, overlap 2722156 2722158 CAGTTTTAGAACGGT AAAAACCCCCAAACAAT CAAGCAA ATGGTTTGGGGGTATTA TTTATTTTATAAAAA TERM 2916 2722156 - 2722190 + F 79 -7.2 -4.48317 | opp_overlap 2722158, overlap 2722153 2722158 TTTTAGAACGGTAAA AACCCCCAAACAAT CAAGCAA ATGGTTTGGGGGTA TTATTTATTTTATAA TERM 2917 2722158 - 2722188 + F 83 -9.8 -3.82187 | opp_overlap 2722158, overlap 2722156 2722153 TTAGAACGGTAAAAA CCCCCAAACAAT CAAGCAA ATGGTTTGGGGG TATTATTTATTTTAT TERM 2918 2722188 - 2722158 - f 95 -10.5 -4.6902 | opp_overlap 2722158 2722156 2722153 TTAGAACGGTAAAAA CCCCCAAACAATC AAGCA AATGGTTTGGGGG TATTATTTATTTTAT TERM 2919 2722290 - 2722251 - f 90 -12.6 -2.90723 | opp_overlap 2722259, overlap 2722259 TCATGTCGAAGTATA TTTTTAAAGTAACAAAAT GGGC ATATTGTTACTTTAAAAA ACAGGAATTTTTTTC Cthe_2287 2722448 - 2723380 + | AraC family transcriptional regulator Cthe_2288 2723907 - 2723353 - | PEBP TERM 2920 2724004 - 2723974 - R 72 -2.6 -5.49234 | overlap 2723976 ATATGGAATAAAAAA TTTGCACAAATACT TGG AGAATTTGCACAGA TAAGCTTAATTTTGA Cthe_2289 2724776 - 2724057 - | hypothetical protein Cthe_2290 2725435 - 2724755 - | ABC transporter related protein TERM 2921 2725031 - 2725045 + g 78 -2.8 -5.51165 | overlap 2725033 GACAATTTTTTGCTT CATTCC AAG GGAATA TTTTTTTACAATTTT TERM 2922 2725033 - 2725043 + g 70 -5.4 -4.36993 | overlap 2725031 CAATTTTTTGCTTCA TTCC AAG GGAA TATTTTTTTACAATT Cthe_2291 2725735 - 2725445 - | hypothetical protein Cthe_2292 2726214 - 2725753 - | hypothetical protein Cthe_2293 2726569 - 2726231 - | hypothetical protein TERM 2923 2726395 - 2726379 - G 73 -2.2 -5.29445 | opp_overlap 2726381, overlap 2726381 CCGTAATAAGAAAAA GAGCTG CCCGC CAGCTT TGTCAGCATAAACAA TERM 2924 2726429 - 2726443 + g 91 -2.2 -6.20267 | opp_overlap 2726429 2726431, overlap 2726431 GTAAACCGGAACAAA TATAAA AAC TTTATG TTTTTTTATTTTTAA Cthe_2294 2726779 - 2728263 + | transposase TERM 2925 2728451 - 2728430 - g 90 -11.6 -3.79906 | opp_overlap 2728450 TCAGCGGGAGAATAA CCGGATCC AGAGAG GGATCCGG CAAGCAGGCTTTCCT Cthe_2295 2728263 - 2729021 + | IstB-like ATP-binding protein TERM 2926 2729321 - 2729307 - T 79 -7 -4.59511 | opp_overlap 2729308, overlap 2729308 AATACTTTTCAAAAA GCGCCG TAT CGGCGT TTCCAATAAAAAGCG TERM 2927 2729308 - 2729320 + T 87 -10.5 -3.59979 | opp_overlap 2729308 2729307 ATACTTTTCAAAAAG CGCCG TAT CGGCG TTTCCAATAAAAAGC TERM 2928 2729320 - 2729308 - T 83 -10.5 -3.34984 | opp_overlap 2729308, overlap 2729307 ATACTTTTCAAAAAG CGCCG TAT CGGCG TTTCCAATAAAAAGC TERM 2929 2729870 - 2729841 - T 70 -4.4 -4.91109 | gap 1, opp_overlap 2729830 TTGGTACGATAAAAA CGTATTTGAACGG CACAT CC-TTCAAATCCG CACCATCGTTTCAAT TERM 2930 2730017 - 2729989 - T 82 -11.1 -2.69259 | opp_overlap 2729990 2729995, overlap 2729986 2729995 CAGCGAGAATAACAG CCGAAACCCTTGG TTT CCAAAGGTTTCAA TTCCTCATAGGTACG TERM 2931 2730011 - 2729995 - T 77 -8.7 -3.69332 | opp_overlap 2729995 2729990, overlap 2729989 2729986 GAATAACAGCCGAAA CCCTTGG TTT CCAAAGG TTTCAATTCCTCATA TERM 2932 2730670 - 2730652 - T 84 -6.1 -5.2197 | overlap 2730646 GATAAAAACGAAAAA GATATCT TATTC AGATATC TCAAATTTAAGGATG TERM 2933 2731355 - 2731325 - T 74 -5.4 -4.9218 | opp_overlap 2731331 2731346 TAGGTACGATAAAAA CGCATATCTGACCT TCA AGTTCAGATTTTCG CCTGAATCTGTTTCA TERM 2934 2731631 - 2731597 - T 86 -7.2 -4.9218 | TAGGTACGATAAAAA CTCTTTCATTGTCGGA TAT TACGACAGCGAAAAAG AAGGTTTCAATTCCT TERM 2935 2731677 - 2731664 - T 70 -4.5 -4.9218 | TAGGTACGATAAAAA CCACG ATAT CGTAG CCTTGGAATCCCAAT TERM 2936 2733431 - 2733418 - T 74 -5.2 -4.9218 | overlap 2733420 TAGGTACGATAAAAA CGCC GCAAGG GGCG AAAGTAAAACCTCTT TERM 2937 2733534 - 2733515 - T 74 -9.4 -2.72902 | overlap 2733514 TACCGAAAAAGAGAT TGAGGAAT TTCA ATTCCTCA TAGGTACGATAAAAA TERM 2938 2733706 - 2733686 - T 80 -6.1 -4.9218 | overlap 2733699 TAGGTACGATAAAAA CGGCGAT TACAAAT ACCGCCG GTATTGAAAGGAGGT TERM 2939 2734035 - 2734025 - T 83 -6.8 -4.9218 | TAGGTACGATAAAAA CGCA ACT TGCG TCCAGCAGATACCAT TERM 2940 2734104 - 2734130 + T 72 -7.4 -3.79043 | AACTCCTTCTCCATC TTTGACAGTGTA ATT TTCATTGTCAAA TTTCAATTCCTCATA TERM 2941 2735523 - 2735538 + T 71 -7.5 -3.47526 | opp_overlap 2735521 2735523, overlap 2735521 AGGTTCCTAATAAGA GGGGC ATAACA GCCCC TATTTCAATTCCTCA TERM 2942 2735538 - 2735523 - T 71 -7.5 -3.38991 | opp_overlap 2735523 2735521, overlap 2735521 AGGTTCCTAATAAGA GGGGC ATAACA GCCCC TATTTCAATTCCTCA TERM 2943 2737232 - 2737208 - T 70 -8 -3.08656 | opp_overlap 2737207 2737208 2737216, overlap 2737207 2737213 CCATGACACACAAAG TGAAATTCAC GCACA GCGAATTTCA ATTCCTCATAGGTAC TERM 2944 2739285 - 2739269 - T 72 -5.1 -4.9218 | opp_overlap 2739268 TAGGTACGATAAAAA CTTTCGT ACG ACGGAAG AATTTCCAGCGAATT TERM 2945 2741192 - 2741157 - T 100 -8.5 -6.12458 | gap 1, opp_overlap 2741157 2741156 CAAAAAAACAAAAAA TCCCTCTAAACAGCTA CAAAT CAGC-GTTTAAAGGGA ATTAATAAATTTCGT Cthe_2296 2741511 - 2741248 - | CRISPR-associated Cas2 family protein Cthe_2297 2742517 - 2741525 - | CRISPR-associated Cas1 family protein TERM 2946 2741786 - 2741776 - G 75 -5.4 -4.77896 | CAATCAACGTAAAAA TGAC TCT GTCA ACAATGATTGGCTTA Cthe_2298 2743043 - 2742531 - | CRISPR-associated Cas4 family protein TERM 2947 2742637 - 2742647 + g 73 -5.4 -4.58283 | ATATCTTTTATAACT GAGT CCA ACTC TTTTTGGGAAGCTTC TERM 2948 2742852 - 2742872 + g 82 -4.1 -5.47431 | opp_overlap 2742849 TGCAACATCAACTTT GAAATTG TCAAAAT CAATTTC TTTTTTCTCTCTTGA Cthe_2299 2745308 - 2743056 - | CRISPR-associated helicase Cas3 TERM 2949 2745040 - 2745020 - G 100 -11.9 -5.24796 | TTGACATAAGAAAAA GGCACGAAA GAA CTTCGTGCC TAAAATGCTTTATAC TERM 2950 2745047 - 2745063 + g 86 -2.3 -5.97575 | opp_overlap 2745047 CTTCGTGCCTAAAAT GCTTT ATACCTG AAAGC TTTTTTTTCTCGATT Cthe_2300 2746055 - 2745330 - | CRISPR-associated Cas5 family protein Cthe_2301 2746958 - 2746074 - | CRISPR-associated autoregulator DevR family protein protein TERM 2951 2746211 - 2746221 + g 72 -3.2 -5.0133 | overlap 2746197 TCTGTTTATGAAAAT CATC GAC GGTG TTTTTTACAAGGCTC Cthe_2302 2748640 - 2746964 - | hypothetical protein TERM 2952 2747120 - 2747136 + g 71 -3.7 -5.00765 | overlap 2747108 CTGCAGATTGTTAAG CTGGTTT ATG AAGTCAG TTTTTGTCCTTGATT Cthe_2303 2749374 - 2748652 - | CRISPR-associated Cas family protein TERM 2953 2749968 - 2749978 + G 81 -6.8 -4.76423 | CACGTCCGGTTTCCG GGCA GGA TGCC TTTTCTGTCTTTGTG Cthe_2304 2749631 - 2750551 + | hypothetical protein TERM 2954 2750537 - 2750572 + T 79 -10.6 -2.50197 | opp_overlap 2750533 2750538, overlap 2750536 GATATAAAATACATA ATGAAGGGAATATAGA TTTC TCCATATTCCCTTCAC GTCCTTTCTTATCTT TERM 2955 2750571 - 2750538 - T 100 -16.3 -3.87562 | opp_overlap 2750537 2750536, overlap 2750533 ATATAAAATACATAA TGAAGGGAATATAGA TTTC TCCATATTCCCTTCA CGTCCTTTCTTATCT Cthe_2305 2751399 - 2750581 - | undecaprenyl pyrophosphate phosphatase TERM 2956 2751134 - 2751109 - G 75 -10.4 -3.2056 | opp_overlap 2751107 AGGTACACCTATCAA TGCTGCCGGC AAAGTG GCCGCCAGCA CCTTAATCCACAGGG Cthe_2306 2752943 - 2751534 - | MATE efflux family protein Cthe_2307 2753202 - 2753624 + | hemerythrin-like metal-binding protein Cthe_2308 2753621 - 2754085 + | CheC-like protein TERM 2957 2754104 - 2754134 + T 90 -9.8 -4.2602 | overlap 2754101 GGGAAATTTACCTGT TTGCACCCCC CTTTTGGTTCA GGGGGTGCAA TTATTTATTCATCTC Cthe_2309 2754946 - 2754173 - | Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase TERM 2958 2755111 - 2755145 + H 86 -5.9 -5.34632 | gap 1, overlap 2755102 TCTGTCGCAAAGTCT CAAATTTGCTTGTATC AAGG GTTACA-GCGAATTTG TTTTTCTGTTTTATT Cthe_2310 2755265 - 2755993 + | hypothetical protein TERM 2959 2756755 - 2756732 - T 71 -6.8 -4.03995 | opp_overlap 2756731 2756732 TGTGGCATAAAAACA GGTTACAG TTAAAATC CTGTAACC CTTGATATTGGCGGA TERM 2960 2757018 - 2756982 - T 70 -6.5 -4.19974 | overlap 2756987 AAAACTTTCAACAAA CATAATGACCACCCGCT ATA AGCAGGTGGCCACCCTC AACTTACCGTTGTTT TERM 2961 2757013 - 2756987 - T 100 -15.2 -3.96841 | overlap 2756982 TTTCAACAAACATAA TGACCACCCGCT ATA AGCAGGTGGCCA CCCTCAACTTACCGT Cthe_2311 2757765 - 2757046 - | hypothetical protein Cthe_2312 2758369 - 2757890 - | hypothetical protein Cthe_2313 2759265 - 2758510 - | hypothetical protein Cthe_2314 2760132 - 2759377 - | hypothetical protein Cthe_2315 2760694 - 2761128 + | T/G mismatch-specific endonuclease TERM 2962 2761134 - 2761192 + T 75 -8.1 -3.679 | gap 1, opp_overlap 2761175 2761185, overlap 2761153 2761185 TGATGGGTAAGAGTA CTTTATACTTTTAAAAACATTTTATAGA TTTT TTTATAAAAT-TTTTAAAAAGTGTAAGG TTGTCTTACCCATTT TERM 2963 2761213 - 2761175 - T 82 -7.7 -4.3739 | opp_overlap 2761134 2761185, overlap 2761185 GATTTTTTTATAAAA TTTTTAAAAAGTGTAAG GTTGT CTTACCCATTTTAAAAA AATAATAAAAAAAGC TERM 2964 2761255 - 2761227 - T 91 -4.6 -6.04419 | AAAATAATAAAAAAA GCAAGGGTTATT AAGCA ATTAACCCCTAC TTACTTTTTGCAAGT TERM 2965 2761276 - 2761288 + T 75 -4.9 -4.9448 | TTTTGCAAGTTCTTG TAAAG CCT CTTTA TTTTGTTTAATCACT Cthe_2316 2762103 - 2761522 - | hypothetical protein TERM 2966 2762116 - 2762126 + r 76 -5.4 -5.08824 | CATAAAGCATCATCT CCTT TTA AAGG TTTTTTGGGTAGGGG TERM 2967 2762221 - 2762206 - R 85 -4.8 -5.69473 | opp_overlap 2762206 TACATTATAAAAAAA TAATCA TTTC TGATTA ATATATTTAGAAACT Cthe_2317 2763603 - 2762209 - | response regulator receiver protein TERM 2968 2763099 - 2763113 + g 74 -4.4 -4.92791 | opp_overlap 2763111, overlap 2763111 TTTTCCATTTTTCTT TTAATT CGA AATTAA TTTTATTATCTTCTC TERM 2969 2763796 - 2763784 - R 72 -3.5 -5.24129 | TTTTTCTATAAAAAA TAAAA AAT TTTTA AACCGGTCACCTCAA TERM 2970 2763949 - 2763981 + r 100 -17.2 -3.69434 | opp_overlap 2763956, overlap 2763956 ACAGTCCACGCCCAA GCAAAAAGCACCGG TTTTT CTGGTGCTTTTTGC TTTACAATTAATTAA TERM 2971 2763956 - 2763974 + r 91 -8.1 -4.99134 | opp_overlap 2763956, overlap 2763949 ACGCCCAAGCAAAAA GCACCGG TTTTT CTGGTGC TTTTTGCTTTACAAT TERM 2972 2763974 - 2763956 - R 78 -5.9 -4.86621 | opp_overlap 2763956 2763949 ACGCCCAAGCAAAAA GCACCGG TTTTT CTGGTGC TTTTTGCTTTACAAT Cthe_2318 2764949 - 2764200 - | hypothetical protein TERM 2973 2764903 - 2764913 + g 74 -4 -5.14949 | overlap 2764908 ACTTCGTCAAACAGT GATT TTA AATC TTTTATTATTTTATT TERM 2974 2765178 - 2765160 - R 72 -6 -4.43208 | overlap 2765162 AGATTTCTAAAGAAA TAGATGCC AGT AGCATCCA GAGGATTATGTAGGG TERM 2975 2765311 - 2765292 - R 100 -12.2 -5.22289 | opp_overlap 2765273 2765292 TATTAAACATAAAAA CAGGAACC GTTT GGTTCCTG TTTCTGTTTTAGGAG TERM 2976 2765292 - 2765311 + r 100 -12.2 -4.45168 | opp_overlap 2765292, overlap 2765273 TATTAAACATAAAAA CAGGAACC GTTT GGTTCCTG TTTCTGTTTTAGGAG TERM 2977 2765646 - 2765666 + r 93 -8.4 -5.12971 | opp_overlap 2765646 CAGCAAAATAAAAAA CTGTTGTA TAGGT TACAACAG TTTTTATTAAATATT TERM 2978 2765666 - 2765646 - R 100 -8.4 -5.83211 | opp_overlap 2765646 CAGCAAAATAAAAAA CTGTTGTA TAGGT TACAACAG TTTTTATTAAATATT Cthe_2319 2766645 - 2765686 - | restriction endonuclease (HaeIII) Cthe_2320 2767651 - 2766647 - | DNA-cytosine methyltransferase Cthe_2321 2768299 - 2767784 - | hypothetical protein TERM 2979 2768362 - 2768386 + r 72 -5.7 -4.48792 | opp_overlap 2768362, overlap 2768359 TTTTAAATAAAAAAA TCCTTGGGATT ATG ACTCCCAAAGA TTCTTTTTAAATTGT TERM 2980 2768386 - 2768362 - R 100 -7.9 -5.95539 | opp_overlap 2768362 2768359 TTTTAAATAAAAAAA TCCTTGGGATT ATG ACTCCCAAAGA TTCTTTTTAAATTGT Cthe_2322 2768725 - 2768393 - | DNA recombinase Cthe_2323 2769792 - 2768845 - | transposase, IS4 Cthe_2324 2770174 - 2769887 - | resolvase-like protein TERM 2981 2770453 - 2770420 - R 100 -9.7 -6.09196 | opp_overlap 2770420 TCCAAAACAAAAAAA GTGATAGCCTTATTC TCTA GAACAAGCCTACCAC CTTATCTATAGAATT Cthe_2325 2772565 - 2770472 - | recombinase TERM 2982 2771524 - 2771535 + g 85 -3 -5.72616 | opp_overlap 2771524 GAGGGCATTTCAATA TGTT AATA AACA TTTTTTTGTGTGCAT TERM 2983 2771798 - 2771814 + g 81 -5.9 -5.02074 | opp_overlap 2771798 TAGTCTTCCGCAATA TACTGGA TTT TCTAGTA TTTTTTGAACGGTAG TERM 2984 2772252 - 2772264 + g 71 -6.3 -4.18161 | opp_overlap 2772252 AACAAACGTAAATTA TTCTC CTT GAGAA TTTTAAAAATTTCTA Cthe_2326 2773116 - 2772637 - | hypothetical protein Cthe_2327 2773927 - 2773136 - | beta-lactamase-like protein Cthe_2328 2775210 - 2773957 - | UDP-N-acetylglucosamine 1-carboxyvinyltransferase TERM 2985 2774874 - 2774886 + g 72 -3.3 -5.03314 | opp_overlap 2774858, overlap 2774871 CACACCCTCCCGGGA GCGAA ACC TCCGC TTTTTTAAACCTGCC Cthe_2329 2776184 - 2775348 - | hypothetical protein Cthe_2330 2777656 - 2776190 - | hypothetical protein TERM 2986 2776824 - 2776842 + g 70 -3.1 -4.85129 | CTTATGTAATCATCC TCATCCT CTCCA AGGACGA TTTTTGCTATATCAT Cthe_2331 2778202 - 2777672 - | hypothetical protein Cthe_2332 2780116 - 2778314 - | multi-sensor signal transduction histidine kinase TERM 2987 2779385 - 2779404 + g 70 -9.4 -2.68493 | opp_overlap 2779389, overlap 2779384 2779389 CCTGCTCATGAAGTT GAAAGCTT TTGT AAGCTTTC CTATTTCATCGTCGG Cthe_2333 2780870 - 2780172 - | two component transcriptional regulator TERM 2988 2781454 - 2781429 - R 81 -9.2 -3.89524 | opp_overlap 2781429 ATTGTATTTGATAAA TAGACGTTTA ATATTG TAAACGTCTA TTTTTAATTCTCACA TERM 2989 2781429 - 2781454 + r 95 -9.2 -4.93365 | opp_overlap 2781429 ATTGTATTTGATAAA TAGACGTTTA ATATTG TAAACGTCTA TTTTTAATTCTCACA Cthe_2334 2783342 - 2781498 - | polysaccharide biosynthesis protein CapD TERM 2990 2783458 - 2783443 - R 82 -4.8 -5.48063 | opp_overlap 2783453, overlap 2783453 ATTGAATACAAAAAA CAAAAA CAAA TTTTTG TAAACAAAAATTAAT TERM 2991 2783468 - 2783453 - R 79 -4.8 -5.21459 | opp_overlap 2783453, overlap 2783443 AAAAACAAAAACAAA TTTTTG TAAA CAAAAA TTAATCTTGGATTTT Cthe_2335 2784941 - 2783469 - | polysaccharide biosynthesis protein TERM 2992 2784493 - 2784503 + g 81 -5.4 -5.05782 | opp_overlap 2784493 2784501 ATGGCACCAAAGTTA CTGT AAA ACAG TTTTTTAAACTGCAT TERM 2993 2784515 - 2784501 - G 76 -7.2 -4.15854 | opp_overlap 2784493, overlap 2784493 AAAGTTACTGTAAAA CAGTTT TTT AAACTG CATGTTGCGAGATAT TERM 2994 2784577 - 2784567 - G 74 -4 -5.0133 | TACCGCTCCAAAAAA CAAT GTA ATTG ACAGTGCTCTTAAAA Cthe_2336 2786170 - 2785043 - | glycosyl transferase, group 1 Cthe_2337 2787461 - 2786148 - | hypothetical protein TERM 2995 2786352 - 2786364 + g 72 -3.5 -5.08169 | opp_overlap 2786352 2786359 2786361 2786363, overlap 2786342 2786359 AGCATTTTTCAAGGA TATAT CAG ATATA TTTTTTAAAATATAT TERM 2996 2787259 - 2787243 - G 100 -3.7 -6.25741 | AAACAATAAAAAAAA CATTACT GTC AGGAATG CAGGCAAAATACTGT Cthe_2338 2788671 - 2787439 - | glycosyl transferase, group 1 Cthe_2339 2789789 - 2788746 - | glycosyl transferase, group 1 TERM 2997 2789083 - 2789093 + g 79 -6.8 -4.53648 | opp_overlap 2789083 ACAGCTTTTTCATAA GGAG CCT CTCC TTTATATTTTATATA Cthe_2340 2791122 - 2789803 - | UDP-glucose/GDP-mannose dehydrogenase Cthe_2341 2792338 - 2791172 - | glycosyl transferase family protein TERM 2998 2791530 - 2791546 + g 74 -3.7 -5.13343 | opp_overlap 2791528 2791526, overlap 2791529 ATAGCCATTAATATC GTACG ATTCATA CGTAC TTTTCTTTTAAATTC Cthe_2342 2793461 - 2792403 - | hypothetical protein TERM 2999 2792697 - 2792714 + g 70 -5.6 -4.41348 | opp_overlap 2792697 2792699 2792711 TCTGTCAGTAGCAGA CAGATG ATAATG CATCTG TTTATTTGCAAACAA Cthe_2343 2793930 - 2793472 - | acetyltransferase Cthe_2344 2794603 - 2793905 - | undecaprenyl-phosphate galactose phosphotransferase Cthe_2345 2795753 - 2794605 - | DegT/DnrJ/EryC1/StrS aminotransferase TERM 3000 2795551 - 2795561 + g 72 -4.6 -4.76123 | opp_overlap 2795551 GTGCCCGATGATAAC GCTG CAG CGGC TTTTATTCCTACTTT TERM 3001 2795690 - 2795709 + g 77 -5 -4.88295 | overlap 2795665 CGTCACTCATATGTG GCGAAGAT AGAT ATATTCGC TTTTTGGATTTATTT Cthe_2346 2798841 - 2795812 - | O-antigen polymerase TERM 3002 2797259 - 2797245 - G 75 -5.6 -4.66163 | ACTGGTATGCAAAAA CAAGGC TCG GCCATG CCCCTCCTCCGGCTC Cthe_2347 2800163 - 2798883 - | lipopolysaccharide biosynthesis TERM 3003 2799859 - 2799873 + g 82 -4.2 -5.37865 | TCTTCACGAATATAC TCCAGT ATC ACAGGA TTTTTTACTTGTTCC TERM 3004 2800241 - 2800266 + r 80 -7.6 -4.29176 | opp_overlap 2800240 GAATCCAATAATGAT GGAGTAATGC CATTGT GCAGTACTCC TTTTGAATTGCCTAT TERM 3005 2800387 - 2800368 - R 100 -13.6 -5.14563 | opp_overlap 2800344 2800368, overlap 2800345 TTTTGTATGAAAAAA GGCTTCCC ATTT GGGAAGCC TTTTTATCCGAAGTA TERM 3006 2800368 - 2800387 + r 100 -13.6 -4.83615 | opp_overlap 2800345 2800368, overlap 2800344 TTTTGTATGAAAAAA GGCTTCCC ATTT GGGAAGCC TTTTTATCCGAAGTA Cthe_2348 2803516 - 2800406 - | Ig-related protein TERM 3007 2803880 - 2803865 - R 95 -10.4 -4.66163 | opp_overlap 2803865 ATGTGCATTTAAAAA GCCGGT TTTC ACCGGC TTTTCCTACGCATTA TERM 3008 2803865 - 2803880 + r 95 -10.4 -4.2679 | opp_overlap 2803865 ATGTGCATTTAAAAA GCCGGT TTTC ACCGGC TTTTCCTACGCATTA Cthe_2349 2804074 - 2803904 - | small, acid-soluble spore proteins, alpha/be TERM 3009 2804088 - 2804122 + H 70 -8.1 -3.11569 | gap 1, overlap 2804087 ATCGTATTTGCCTCC TTTTTG-CATTGGCCT GAAA AGACCAATGTCAAAAA ATTTTGCGTACATAA Cthe_2350 2804360 - 2804803 + | cell wall hydrolase, SleB Cthe_2351 2804859 - 2805308 + | hypothetical protein TERM 3010 2805453 - 2805420 - T 79 -6.8 -4.66535 | opp_overlap 2805418 2805420 2805421, overlap 2805422 AACTTGCAAAACAAA GATTGAGATGACAC CGCTTT GTGTCATCTCAAAG TATCTTATACCTTTT TERM 3011 2805421 - 2805452 + T 79 -10.3 -2.52161 | opp_overlap 2805420 2805422, overlap 2805420 2805418 ACTTGCAAAACAAAG ATTGAGATGACAC CGCTTT GTGTCATCTCAAA GTATCTTATACCTTT TERM 3012 2805451 - 2805422 - T 100 -13.8 -3.93868 | opp_overlap 2805421 2805420 2805418, overlap 2805420 CTTGCAAAACAAAGA TTGAGATGACAC CGCTTT GTGTCATCTCAA AGTATCTTATACCTT Cthe_2352 2805909 - 2805481 - | signal-transduction protein Cthe_2353 2806134 - 2807282 + | PGAP1-like protein Cthe_2354 2808425 - 2807592 - | nicotinate-nucleotide pyrophosphorylase [carboxylating] Cthe_2355 2810052 - 2808454 - | L-aspartate oxidase Cthe_2356 2811124 - 2810210 - | quinolinate synthetase A TERM 3013 2810619 - 2810630 + g 78 -3 -5.40072 | ATACAATAACCTTCC CATA AAAT TATG TTTTTTTCCGGAACC TERM 3014 2811615 - 2811603 - g 70 -3.3 -4.94058 | opp_overlap 2811603, overlap 2811598 TCAATTCAAAGAAAA GCAGT GAT ACAGC TTCCCTGGGTCTGAT TERM 3015 2811775 - 2811763 - g 70 -3.5 -4.93877 | TTTGACCAAAGAAAA TTTTA ACG TAAAA TTAAAATATTCCGAT Cthe_2357 2811392 - 2812564 + | hypothetical protein TERM 3016 2812590 - 2812635 + T 100 -10.7 -5.02074 | gap 1, opp_overlap 2812586 2812593 2812598, overlap 2812598 GATGGACAAAACATA TAAT-TTAACAGGCACTCTTCA TTT TGAGGAGTGCCTGTTTATATCA TTTTTTACCGAATCC TERM 3017 2812631 - 2812593 - T 100 -11.8 -3.86658 | opp_overlap 2812590 2812598, overlap 2812586 2812598 GGACAAAACATATAA TTTAACAGGCACTCTTCA TTT TGAGGAGTGCCTGTTTAT ATCATTTTTTACCGA TERM 3018 2812626 - 2812598 - T 100 -16.1 -3.29581 | opp_overlap 2812590 2812598, overlap 2812593 2812586 AAACATATAATTTAA CAGGCACTCTTCA TTT TGAGGAGTGCCTG TTTATATCATTTTTT TERM 3019 2812598 - 2812626 + T 100 -18.3 -4.24562 | opp_overlap 2812598 2812593 2812586, overlap 2812590 AAACATATAATTTAA CAGGCACTCTTCA TTT TGAGGAGTGCCTG TTTATATCATTTTTT Cthe_2358 2813261 - 2812608 - | accessory gene regulator B TERM 3020 2813378 - 2813410 + H 83 -10.6 -3.12327 | opp_overlap 2813379, overlap 2813383 TTTTTGATATAAAAA ACAAAGCCCTACGG AACAA CCGTAAGGCTTTGA TATTAAATCTGGCAG TERM 3021 2813409 - 2813379 - H 100 -16.3 -5.36441 | opp_overlap 2813378 2813383 TTTTGATATAAAAAA CAAAGCCCTACGG AACAA CCGTAAGGCTTTG ATATTAAATCTGGCA TERM 3022 2813383 - 2813405 + H 81 -9.1 -3.94184 | opp_overlap 2813379, overlap 2813378 GATATAAAAAACAAA GCCCTACGG AACAA CCGTAAGGC TTTGATATTAAATCT TERM 3023 2815993 - 2816004 + H 76 -7.2 -4.2354 | AGGTTCTCTTTCACT CCCC TCCC GGGG TTCTTTTCACCTTTC TERM 3024 2816174 - 2816191 + H 76 -8.5 -3.4178 | overlap 2816157 TTCACCCTCTATGGT GTAAGCT TTCC AGCTTAC TTCTGCTAAGCTCGT TERM 3025 2816232 - 2816255 + H 75 -8.2 -3.66803 | overlap 2816250 TGCCGGTCCGCAACC CCGAACTATA TTGC TATAGCTCGG TTTGGGCTCTTCCGC TERM 3026 2816719 - 2816706 - H 70 -8.1 -3.01791 | ATCTTTTTCGGAACA CAGGC TATC GCCTG TATCCCGAACTGGTG TERM 3027 2816919 - 2816905 - H 71 -8.6 -2.83715 | CGTAGTATCATTATA CTCCTT AGA AAGGAG GTGATCCAGCCGCAC TERM 3028 2818024 - 2818050 + H 89 -10.8 -3.57561 | CCCGAAGGCCTTCTT CCTTCACGCGGC GTT GCTGCGTCAGGG TTTCCCCCATTGCGC TERM 3029 2818270 - 2818285 + H 77 -9 -3.32819 | ATTATGCGGTATTAG CACAGG TTTC CCTGTG TTATCCCCCTGTATG TERM 3030 2818608 - 2818626 + H 95 -6 -5.88061 | ATATGTTATCATGCT GTCTTTAC TTT GTCAAGAC TTTTTTTAATTTTTT TERM 3031 2818953 - 2818966 + H 74 -3.9 -5.26119 | opp_overlap 2818948 AATATAAATTGCACT GTTTT CAAA AAAAC TTTTATTTTTGGCAA Cthe_2359 2819070 - 2819687 + | metal dependent phosphohydrolase TERM 3032 2820241 - 2820213 - f 85 -3.2 -5.9663 | opp_overlap 2820216 2820218 2820219, overlap 2820214 AAACAGTAAAAAAAA GTACAGGTTATC TTTCT GATAATCTGTAT GATAACTTCAATTAT TERM 3033 2820240 - 2820214 - f 71 -6.7 -4.14318 | opp_overlap 2820216 2820218 2820219, overlap 2820213 AACAGTAAAAAAAAG TACAGGTTATC TTTCT GATAATCTGTA TGATAACTTCAATTA Cthe_2360 2820240 - 2823026 + | glycoside hydrolase family protein TERM 3034 2823073 - 2823047 - T 100 -12.4 -5.13137 | opp_overlap 2823047 TAAACAAATCAAAAA GAGCCGGAAA TCAAGCT TTTCCGGCTC TTTTTTAGCTCTTCT TERM 3035 2823047 - 2823073 + T 100 -12.4 -5.17054 | opp_overlap 2823047 TAAACAAATCAAAAA GAGCCGGAAA TCAAGCT TTTCCGGCTC TTTTTTAGCTCTTCT Cthe_2361 2825676 - 2823193 - | DNA gyrase subunit A TERM 3036 2823852 - 2823863 + g 80 -4.4 -5.33848 | opp_overlap 2823852 ATTCAGATATAGGAA TCAC CGTA GTGA TTTTTTCATTCTGGT TERM 3037 2824181 - 2824193 + g 74 -6.3 -4.40037 | overlap 2824188 ATTTCTATTTCGTCT TCATC AGG GATGA TTTTCGTCCTTCTTT TERM 3038 2825939 - 2825915 - R 78 -2.2 -5.75478 | gap 1, opp_overlap 2825915 2825917 2825921, overlap 2825917 AAGGATACAAAAAAA CAG-GTATGAT AATA ATCATTCCCTG TTTTTTGTAAAATAA Cthe_2362 2826846 - 2826010 - | ParB family protein TERM 3039 2826073 - 2826085 + g 74 -4.8 -4.73388 | CTGGGCTGCTTTTGC GTCC ACTCC GGAC TTTTTCATGAGAATT TERM 3040 2826336 - 2826350 + g 78 -2.9 -5.40072 | GTCTTTCCGTAAGAT TATTG TCCAT CAATA TTTTTTTGACAAGAG Cthe_2363 2827773 - 2827045 - | methyltransferase GidB TERM 3041 2827100 - 2827111 + g 75 -3 -5.252 | GGATATTTTGTCGGA GTTT GTCT AAAC TTTTTTATAACAATG TERM 3042 2827191 - 2827203 + g 70 -2.7 -5.15117 | CAATCTTTCCCCCAA GTATT TCC AATGC TTTTTTAGAGTTTTC Cthe_2364 2829685 - 2827793 - | tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA TERM 3043 2828548 - 2828558 + g 73 -6.8 -4.1523 | opp_overlap 2828548 2828547 CGGCTTCTTCATAAC CGGA AGT TCCG TTTATCTGTCCTGCC TERM 3044 2828945 - 2828963 + g 78 -3 -5.39721 | opp_overlap 2828948, overlap 2828946 2828948 GTTGGTGTATGTAAG ATAGCAGG ATA CCTGCTCC TTTTTTATCTCCTCG TERM 3045 2828948 - 2828960 + g 74 -9.1 -3.48081 | opp_overlap 2828948, overlap 2828946 2828945 GGTGTATGTAAGATA GCAGG ATA CCTGC TCCTTTTTTATCTCC TERM 3046 2828960 - 2828948 - G 70 -9.1 -3.10344 | opp_overlap 2828948 2828946 2828945 GGTGTATGTAAGATA GCAGG ATA CCTGC TCCTTTTTTATCTCC Cthe_2365 2831086 - 2829707 - | tRNA modification GTPase TrmE TERM 3047 2831208 - 2831181 - R 89 -8.6 -4.7339 | opp_overlap 2831181 2831184, overlap 2831172 AATAAACTGCAAAAA TGGTTCAAGA TGAATTTT TCTTGAACCA TTTGCGTACTCCAAA TERM 3048 2831181 - 2831208 + r 77 -8.6 -3.68351 | opp_overlap 2831181 2831172, overlap 2831184 AATAAACTGCAAAAA TGGTTCAAGA TGAATTTT TCTTGAACCA TTTGCGTACTCCAAA TERM 3049 2831184 - 2831194 + r 70 -4 -5.06816 | opp_overlap 2831181 2831172, overlap 2831181 AAACTGCAAAAATGG TTCA AGA TGAA TTTTTCTTGAACCAT Cthe_2366 2831922 - 2831302 - | single-stranded nucleic acid binding R3H Cthe_2367 2832798 - 2831923 - | protein translocase subunit yidC Cthe_2368 2833034 - 2832819 - | hypothetical protein Cthe_2369 2833396 - 2833016 - | ribonuclease P protein component TERM 3050 2833452 - 2833435 - R 100 -7.7 -5.33026 | opp_overlap 2833437 2833451 CAATTTAAATAAAAA GACCACA TTTA TGCGGTC TTACGCTGAAAGAAC Cthe_2370 2833587 - 2833453 - | 50S ribosomal protein L34P TERM 3051 2833505 - 2833517 + g 74 -4.8 -4.70739 | CTTCTCAAAACTTTT CTGC CATTT GCAG TTTTCATTCTTTTTC TERM 3052 2835317 - 2835307 - g 70 -5.4 -4.35742 | AGCGAAGCATTAAAA GACA TAC TGTC AGCAAACAAGGCGAA dnaA 2834293 - 2835624 + | chromosomal replication initiation protein TERM 3053 2835649 - 2835629 - f 100 -9.9 -5.79595 | TGGGAAAATAAAAAA TATCAACAA AAA TTGTTGATA TGGGGACAACTTCAT Cthe_2372 2835874 - 2836974 + | DNA polymerase III subunit beta Cthe_2373 2836990 - 2837196 + | RNA-binding S4 TERM 3054 2837602 - 2837592 - g 75 -5.4 -4.77567 | opp_overlap 2837595 2837598, overlap 2837595 2837598 ATTTTGATAATAAAA GAAG GAC CTTC GGAAAGAAGAAGGTT TERM 3055 2837856 - 2837842 - g 88 -2.8 -5.92337 | AGATATCAAAAAAAA TCCACT TAA AGTTGA CGGACGGCAGTGAAA Cthe_2374 2837214 - 2838323 + | DNA replication and repair protein RecF TERM 3056 2838563 - 2838537 - g 71 -6 -4.14633 | overlap 2838540 TACCGGTAAAAAATA TAATTGCCATAT TGG ATATGGAAACTA CGACTATATCCAAGG Cthe_2375 2838491 - 2838805 + | hypothetical protein TERM 3057 2839587 - 2839571 - g 71 -5.1 -4.63044 | ATGGACAGAAACAAA GATCCGT TGC ACGAACC GATTTATTTTGACGG TERM 3058 2840426 - 2840442 + G 70 -8 -3.69083 | opp_overlap 2840441, overlap 2840441 TACAGGTATATGACT CCGTTG ATTAC CAACGG TTATGTATATATTGC TERM 3059 2840637 - 2840602 - g 79 -10.4 -3.51232 | overlap 2840598 TCTGGGTGAAATGAA TCCGGAACAGTTGTGG ACTA CCACAATGGATCCGGA AACGAGGACTATTTT Cthe_2376 2838854 - 2840779 + | DNA gyrase subunit B TERM 3060 2840806 - 2840793 - f 85 -8.1 -4.56093 | opp_overlap 2840768 2840793, overlap 2840788 AATTTAATTATAAAA CAGGG TTAT CCCTG TTTTTTTTCTTTTTT TERM 3061 2840793 - 2840806 + F 100 -8.1 -6.47325 | opp_overlap 2840788 2840793, overlap 2840768 AATTTAATTATAAAA CAGGG TTAT CCCTG TTTTTTTTCTTTTTT TERM 3062 2841252 - 2841267 + F 80 -6.2 -4.79451 | opp_overlap 2841252, overlap 2841247 ATTGAATGAAAAAAA TGTTTC ACGT GAAACA TTTTATATTTAAAAT TERM 3063 2841267 - 2841252 - f 93 -6.2 -5.64006 | opp_overlap 2841252 2841247 ATTGAATGAAAAAAA TGTTTC ACGT GAAACA TTTTATATTTAAAAT TERM 3064 2842286 - 2842263 - g 76 -7.6 -4.1721 | ATGGAGACCGTAAAA CTTGTTCAAA AGCA TTTAAACAAG AACCTGGATGTTGAG TERM 3065 2842383 - 2842371 - g 72 -3.5 -5.09173 | GAAGAGGTCAAAAAA TATTT TAA AAATA AAGTATACAGAACAA Cthe_2377 2841765 - 2842541 + | chromosome segregation ATPase Cthe_2378 2842538 - 2843407 + | chromosome segregation DNA-binding protein TERM 3066 2843894 - 2843882 - f 79 -2.7 -5.88476 | overlap 2843883 2843890 AAAACAAATAAAAAA CTGAA AAA TTCAA ATTTGAAAAAAAAGA TERM 3067 2844435 - 2844421 - g 77 -6.4 -4.62471 | CGGAACTTCCAAAAA TCCACT TTC AGCGGA AGAATTACAGGCTAT Cthe_2379 2843969 - 2844478 + | hypothetical protein TERM 3068 2845038 - 2845024 - g 100 -8.6 -5.98675 | TATAAAAACAAAAAA TACAGC GAA GCTGTA AAAAGCCTGAATCTT Cthe_2380 2844499 - 2845239 + | TPR repeat-containing protein TERM 3069 2845611 - 2845601 - g 75 -5.4 -4.72772 | opp_overlap 2845601 AAAAAAGAAGGAAAA GATG TAT CATC TCTGATGGAGGAAAT Cthe_2381 2845403 - 2846674 + | seryl-tRNA synthetase TERM 3070 2846870 - 2846854 - T 76 -3.7 -5.32599 | opp_overlap 2846857, overlap 2846846 2846855 GATAAAAGATAAAAA TTACCTT AAA AAGGTAT AATAAAAGTCTTGAC TERM 3071 2846869 - 2846855 - T 72 -7.2 -3.77119 | opp_overlap 2846857, overlap 2846846 2846854 ATAAAAGATAAAAAT TACCTT AAA AAGGTA TAATAAAAGTCTTGA TERM 3072 2847078 - 2847092 + T 72 -8.6 -3.07994 | GTAGGTCGAAGGGGA CGGTTT GCT AAACCG TTAGGTCGGCTTAAA TERM 3073 2847141 - 2847180 + T 100 -21.2 -4.10717 | opp_overlap 2847145 2847150, overlap 2847145 2847150 TCCCTCCTTCTCCGC CAAATAAAAGCATTCCAT TATT ATGGAATGCTTTTATTTG TTGTTTACCTTTTTA TERM 3074 2847176 - 2847145 - T 100 -16.2 -3.53012 | opp_overlap 2847141 2847145 2847150, overlap 2847150 TCCTTCTCCGCCAAA TAAAAGCATTCCAT TATT ATGGAATGCTTTTA TTTGTTGTTTACCTT TERM 3075 2847145 - 2847176 + T 100 -16.2 -4.59489 | opp_overlap 2847145 2847150, overlap 2847141 2847150 TCCTTCTCCGCCAAA TAAAAGCATTCCAT TATT ATGGAATGCTTTTA TTTGTTGTTTACCTT TERM 3076 2847171 - 2847150 - T 100 -11.7 -4.86731 | opp_overlap 2847145 2847141 2847150, overlap 2847145 CTCCGCCAAATAAAA GCATTCCAT TATT ATGGAATGC TTTTATTTGTTGTTT TERM 3077 2847150 - 2847171 + T 100 -11.7 -5.20331 | opp_overlap 2847150 2847145, overlap 2847145 2847141 CTCCGCCAAATAAAA GCATTCCAT TATT ATGGAATGC TTTTATTTGTTGTTT Cthe_2382 2848593 - 2847193 - | major facilitator transporter TERM 3078 2848849 - 2848816 - R 91 -5.5 -5.80364 | opp_overlap 2848816, overlap 2848825 ATTTTAATAAAAAAA GATGTATAAGC AGTGTAGAAAAA GCTTATACATC TTTTTTTACATGCGA TERM 3079 2848816 - 2848849 + r 84 -5.5 -5.47218 | opp_overlap 2848816 2848825 ATTTTAATAAAAAAA GATGTATAAGC AGTGTAGAAAAA GCTTATACATC TTTTTTTACATGCGA Cthe_2383 2849844 - 2848930 - | hypothetical protein TERM 3080 2848959 - 2848980 + g 72 -4.5 -4.77165 | opp_overlap 2848973 2848974, overlap 2848960 AGTATACAAATCTGT CGTTATAGT CAAA ACTATAACC TTTTGTTATAACAAG TERM 3081 2850047 - 2850026 - R 79 -3.7 -5.56573 | opp_overlap 2850026 ATAAAGAAATAAAAA GCATCCC AAAATTCA AGGATGC TTTTATAAATCCATA Cthe_2384 2850688 - 2850119 - | S-layer-like domain-containing protein Cthe_2385 2850900 - 2851433 + | hypothetical protein TERM 3082 2851485 - 2851507 + T 80 -6.2 -4.90079 | opp_overlap 2851485, overlap 2851480 AACTGTAAATAAAAA GCGAAGGG CTTATTT CCCCTCGC TTTTATTATTGGAAT TERM 3083 2851507 - 2851485 - T 93 -8.4 -5.29846 | opp_overlap 2851480 2851485 AACTGTAAATAAAAA GCGAAGGG CTTATTT CCCCTCGC TTTTATTATTGGAAT Cthe_2386 2853252 - 2851543 - | VanW TERM 3084 2853392 - 2853416 + r 79 -8.7 -3.83026 | overlap 2853388 AACATTATTCCTTAT CTTGGGATAAT TAT ATTATCGCAAG TTTGCTGTAAAAAAA Cthe_2387 2854868 - 2853597 - | gamma-D-glutamyl-{L}-meso-diaminopimelate peptidase I. metallo peptidase. MEROPS family M14C TERM 3085 2853967 - 2853950 - G 70 -9.9 -2.60496 | opp_overlap 2853946 2853950, overlap 2853947 2853949 2853952 CGGGCTCTGAAAGAG GATACGG TCCT CCGTATC TTGTGGGGCCAGGAC TERM 3086 2853950 - 2853967 + g 75 -9.9 -3.28712 | opp_overlap 2853947 2853950 2853949 2853952, overlap 2853946 CGGGCTCTGAAAGAG GATACGG TCCT CCGTATC TTGTGGGGCCAGGAC Cthe_2388 2855054 - 2855377 + | hypothetical protein TERM 3087 2855748 - 2855771 + G 70 -8.8 -3.41527 | CGGCATTTATTGTAG GTACGCTGGG AGTG CCCGGAGTAC TTATGATAACAATTC Cthe_2389 2855531 - 2855809 + | sigmaK-factor processing regulatory BofA TERM 3088 2856497 - 2856486 - g 70 -3 -5.10461 | opp_overlap 2856486 TTGACGCAAGAAAAA TTTC CATT GAAA CTTTGGGAAAATACT Cthe_2390 2856110 - 2856688 + | pyruvate ferredoxin oxidoreductase, gamma subunit TERM 3089 2856743 - 2856712 - g 77 -8.1 -4.26188 | TTGAGAGATGTAAAA CCTGATGTTACCT GGAAAG AGATAACATCCGG TGGAGTGATAGATTC Cthe_2391 2856685 - 2856990 + | pyruvate ferredoxin oxidoreductase, delta subunit Cthe_2392 2857007 - 2858191 + | pyruvate ferredoxin oxidoreductase, alpha subunit TERM 3090 2858252 - 2858237 - g 79 -3.2 -5.43866 | GAAGTTGCAAAAAAA CCGGAA AGAC TTACGG GCGGACACAGAATGT Cthe_2393 2858204 - 2859139 + | thiamine pyrophosphate enzyme-like TPP-binding Cthe_2394 2860374 - 2859535 - | hypothetical protein TERM 3091 2859753 - 2859735 - G 95 -6.2 -5.56573 | overlap 2859729 ATAAAGAAATAAAAA TATTTATT CTT AATAAATA GACATTTTGTGATGA Cthe_2395 2861183 - 2860464 - | XRE family transcriptional regulator TERM 3092 2860917 - 2860901 - G 71 -5.3 -4.59414 | opp_overlap 2860903, overlap 2860895 CCATAATAAGCAAAA TATTTTT TAC AAAAATA TCATGGTCAAATTTT TERM 3093 2861004 - 2861023 + g 70 -8 -3.64236 | AGGGTAGTCATATGC CTTTGAAA TCAT TTTCAAAG TTTCAGGCTTTGGAT TERM 3094 2861401 - 2861382 - H 91 -3.7 -6.14618 | TATAAAAGAAAAAAA TAGAATA TATTCT TATTCTA AAACACTTTACAAAA TERM 3095 2862087 - 2862073 - g 70 -5.8 -4.40963 | opp_overlap 2862084 ATTTTTTAAAAAGAA TAAACA AAT TGTTTA AAATAAATTCTCTTA Cthe_2396 2861868 - 2862143 + | hypothetical protein TERM 3096 2862262 - 2862279 + F 87 -2.7 -6.34616 | AAGTAAAAATAAAAA GATACTT GTGG GAGTGTC TTTTTTTTATTTTGG TERM 3097 2862352 - 2862334 - g 70 -2.5 -5.01732 | gap 1, opp_overlap 2862334 AATGGTGCGAAAAAA CAGGCATA ATCT TAT-CCTG ATATTAATTATTATT TERM 3098 2863315 - 2863335 + G 71 -6.9 -4.08945 | TGTGTTGTACATTCA CCTGTTTAT AGT ATATACAGG TTTTGCCGGCATAGT Cthe_2397 2862320 - 2863540 + | hypothetical protein Cthe_2398 2863682 - 2864671 + | putative spore coat protein TERM 3099 2864723 - 2864749 + T 77 -8.8 -3.57462 | gap 1, opp_overlap 2864721 2864719 2864741 AATAAAAAATTTAGA GCCCAATGGGA AGAAAA TCCCAT-GGGC TTTGGGCGTAAGCTC Cthe_2399 2866453 - 2864783 - | formate-tetrahydrofolate ligase TERM 3100 2864908 - 2864894 - G 70 -5.6 -4.31835 | AATTGCCACAATAAA TCCTGC TCC GCTGGA AAGCTTTATTTCCCT TERM 3101 2865004 - 2865018 + g 71 -6.4 -4.1964 | opp_overlap 2865004 TCTTGGCTACACATA TGGGCA GCT TGTCCA TTTTAAGCTCTTCAA TERM 3102 2866027 - 2866053 + g 75 -9.4 -3.33671 | TATGATTATCGATAG CGGCTGACAACA AGT TGTTGGCAGCGG TTATCGCGTGCATGT TERM 3103 2866127 - 2866138 + g 83 -7.2 -4.68103 | opp_overlap 2866108 GGAGTATCCTCCTCC GGCG GCTC CGCC TTTTATTCCCATTAC TERM 3104 2866244 - 2866265 + g 73 -7.9 -3.87815 | overlap 2866245 GGTGGTGGTGGTCTT TCCCTCACC GGCC GGTGTGGGG TTTATCGCAGTCACC TERM 3105 2866897 - 2866879 - g 72 -3.2 -5.02074 | TTATGCGTGAAAAAA CAAAAAAA AAA TTCTTTCG TGACGCCGCTAAAGA Cthe_2400 2866620 - 2867495 + | peptidase U57, YabG Cthe_2401 2867730 - 2867996 + | hypothetical protein TERM 3106 2868059 - 2868098 + F 100 -24 -4.60487 | opp_overlap 2868059 2868067, overlap 2868067 AATCTTACTTAAAAA GCATAAAAGAACCGAATC GCAA GATTCGGTTCTTTTATGC TTTTTAAAAATAGTG TERM 3107 2868098 - 2868059 - f 100 -24 -4.67011 | opp_overlap 2868059 2868067, overlap 2868067 AATCTTACTTAAAAA GCATAAAAGAACCGAATC GCAA GATTCGGTTCTTTTATGC TTTTTAAAAATAGTG TERM 3108 2868090 - 2868067 - f 100 -14 -4.72556 | opp_overlap 2868067 2868059, overlap 2868059 TTAAAAAGCATAAAA GAACCGAATC GCAA GATTCGGTTC TTTTATGCTTTTTAA TERM 3109 2868067 - 2868090 + F 100 -14 -4.72556 | opp_overlap 2868059 2868067, overlap 2868059 TTAAAAAGCATAAAA GAACCGAATC GCAA GATTCGGTTC TTTTATGCTTTTTAA TERM 3110 2868112 - 2868130 + F 74 -7.6 -3.93262 | opp_overlap 2868111 2868112 GCTTTTTAAAAATAG TGATAAAA AGA TTTTATCA TTTACTCTGTTCAAC Cthe_2402 2868273 - 2869841 + | peptidoglycan-binding LysM TERM 3111 2869901 - 2869877 - f 70 -7.1 -3.56972 | opp_overlap 2869878 2869879, overlap 2869878 2869893 ATTTTATCAAATTAA GGTCCGAAGTC GAA GATTTCGGACT TTTTTGTGCGAAATT TERM 3112 2869900 - 2869878 - f 80 -10.6 -2.73701 | opp_overlap 2869878 2869879, overlap 2869877 2869893 TTTTATCAAATTAAG GTCCGAAGTC GAA GATTTCGGAC TTTTTTGTGCGAAAT TERM 3113 2869878 - 2869900 + F 100 -12.8 -5.24531 | opp_overlap 2869877 2869878 2869893, overlap 2869879 TTTTATCAAATTAAG GTCCGAAGTC GAA GATTTCGGAC TTTTTTGTGCGAAAT TERM 3114 2869879 - 2869928 + F 85 -6.6 -5.08255 | opp_overlap 2869878 2869877 2869893, overlap 2869878 TTTATCAAATTAAGG TCCGAAGTCGAAGATTTCGGAC TTTTTT GTGCGAAATTTTCAAGTTTGGA TTTTGTTTTGCACAT TERM 3115 2870572 - 2870556 - g 71 -3.7 -4.88388 | opp_overlap 2870556 2870548 AGAAGCTTACAAAAA TCCCT TCTTTTG AGGGA GTGAATATTGTATTG TERM 3116 2870801 - 2870785 - g 77 -5.1 -4.85177 | opp_overlap 2870788 AAATGATATTAAAAA CGAGC TCTTGAG GCTCG GAGCTTTGGGAAGCA ipk 2870084 - 2870935 + | 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase Cthe_2404 2871042 - 2871734 + | GntR family transcriptional regulator TERM 3117 2871721 - 2871743 + T 95 -11.3 -3.90038 | opp_overlap 2871720 AAAATATGAAGGGAG GTGGAGGGG AATAA CCTCTCCAC TTTAAATTATTTCAT Cthe_2405 2871951 - 2871745 - | heavy metal transport/detoxification protein Cthe_2406 2872160 - 2872672 + | hypothetical protein Cthe_2407 2872752 - 2874374 + | AAA ATPase, central region Cthe_2408 2874469 - 2875197 + | phage shock protein A, PspA TERM 3118 2875221 - 2875243 + F 74 -7 -4.25104 | opp_overlap 2875221 2875219 TTGTAAATTAAAACA CACACTCC CAAAGAA GGGGTGTG TTTTGCTAAGAGGGG Cthe_2409 2875263 - 2876069 + | hypothetical protein TERM 3119 2876255 - 2876279 + G 71 -9.5 -2.75993 | overlap 2876254 2876257 GATTTTGATATGTCA CAGGAAAATAT TAT ATATTTTTCTG ATTATATCTGCATAA TERM 3120 2876739 - 2876729 - g 90 -3.2 -5.99154 | TATGAAATAAAAAAA GCAA AGC CTGC GATAAAAGAGGACGG Cthe_2410 2876249 - 2877841 + | hypothetical protein TERM 3121 2878393 - 2878376 - g 71 -4.1 -4.99043 | GTCTTATAAACAAAA TTGAGCC GGCA GACCCAA GGTATATTAATATTT Cthe_2411 2877937 - 2879082 + | metallophosphoesterase TERM 3122 2880668 - 2880651 - g 70 -3.4 -4.92757 | overlap 2880646 2880664 TTATTAAGAAGAAAA CCCTGT ACGAAA ACAAGG TTCTCCGCCTTGCCG Cthe_2412 2879144 - 2881795 + | SMC protein-like protein TERM 3123 2882551 - 2882529 - g 77 -10.6 -2.84051 | overlap 2882528 2882532 CTACTGTGAGTAAAT TCACAGGTAC GCC GTACCTGTGG GGAGGAGTCAGCAGC TERM 3124 2882548 - 2882532 - g 76 -10.9 -2.67803 | overlap 2882529 2882528 CTGTGAGTAAATTCA CAGGTAC GCC GTACCTG TGGGGAGGAGTCAGC Cthe_2413 2881865 - 2882878 + | NLP/P60 Cthe_2414 2884000 - 2882849 - | monogalactosyldiacylglycerol synthase TERM 3125 2884036 - 2884046 + H 71 -5.4 -4.6391 | opp_overlap 2884036 AGTTATTTTGCAAAG CACA TAT TGTG TTTTCTGTAATTCTT Cthe_2415 2884231 - 2884932 + | cell wall hydrolase, SleB Cthe_2416 2884976 - 2886370 + | peptidase TERM 3126 2886369 - 2886396 + F 93 -8.5 -4.80487 | opp_overlap 2886372, overlap 2886372 GAGTACTGACAATGT AAATCGGGCAA GCAAAA TTGCCCGATTA TTTGTTTTACTTCTG TERM 3127 2886372 - 2886393 + F 93 -10.2 -4.47163 | opp_overlap 2886372, overlap 2886369 TACTGACAATGTAAA TCGGGCAA GCAAAA TTGCCCGA TTATTTGTTTTACTT TERM 3128 2886393 - 2886372 - f 87 -10.2 -3.81339 | opp_overlap 2886372 2886369 TACTGACAATGTAAA TCGGGCAA GCAAAA TTGCCCGA TTATTTGTTTTACTT TERM 3129 2887298 - 2887319 + G 70 -8 -3.76492 | opp_overlap 2887298 TGTATCTGAAATGAA CACGTCCG GTGCGG CGGATGTG TTTGGTGAGCTTCAA Cthe_2417 2886534 - 2887622 + | abortive infection protein Cthe_2418 2888717 - 2887674 - | DNA replication protein DnaC TERM 3130 2888297 - 2888281 - G 78 -7.3 -4.35518 | AAGTTCACATTAAAA GTGGAAA AAT TCTCCAC ATCCAGAACCTTTAT Cthe_2419 2889727 - 2888750 - | DNA replication protein DnaD TERM 3131 2889697 - 2889673 - G 76 -4.4 -5.06816 | gap 1 ACTCGGTAATAAAAA TATCCGGA-AC CAGG GTATCCGAATA AAGAATTGATTTGCA TERM 3132 2890038 - 2890085 + H 76 -6.5 -4.62872 | gap 1, opp_overlap 2890048, overlap 2890041 2890045 2890048 GACTCCTCTTGGGCG CGCCA-GATAAGGCAGCTGATC GTTGG GATTAGTTGCCTTATTGTGTTG TTTTTGACAGTTGAT TERM 3133 2890041 - 2890082 + H 89 -9 -4.42235 | gap 1, opp_overlap 2890048, overlap 2890038 2890045 2890048 TCCTCTTGGGCGCGC CA-GATAAGGCAGCTGATC GTTGG GATTAGTTGCCTTATTGTG TTGTTTTTGACAGTT TERM 3134 2890045 - 2890077 + H 100 -12.2 -4.01454 | opp_overlap 2890048, overlap 2890041 2890038 2890048 CTTGGGCGCGCCAGA TAAGGCAGCTGATC GTTGG GATTAGTTGCCTTA TTGTGTTGTTTTTGA TERM 3135 2890048 - 2890074 + H 86 -9.5 -4.07533 | opp_overlap 2890048, overlap 2890045 2890041 2890038 GGGCGCGCCAGATAA GGCAGCTGATC GTTGG GATTAGTTGCC TTATTGTGTTGTTTT Cthe_2420 2890294 - 2892075 + | HD superfamily phosphohydrolase Cthe_2421 2892106 - 2892354 + | hypothetical protein TERM 3136 2892423 - 2892464 + T 93 -8.9 -4.74084 | opp_overlap 2892423 2892428, overlap 2892427 TTTGCTTTATATAAA TAAAACAGGAGTTGTGGAA CATA TTTTTCAACTCCTGCTTTA TTTTCGTTTTAATTT TERM 3137 2892464 - 2892423 - T 71 -6.7 -4.03234 | opp_overlap 2892423 2892427, overlap 2892428 TTTGCTTTATATAAA TAAAACAGGAGTTGTGGAA CATA TTTTTCAACTCCTGCTTTA TTTTCGTTTTAATTT TERM 3138 2892427 - 2892460 + T 74 -5.3 -4.86613 | opp_overlap 2892423 2892428, overlap 2892423 CTTTATATAAATAAA ACAGGAGTTGTGGAA CATA TTTTTCAACTCCTGC TTTATTTTCGTTTTA TERM 3139 2892459 - 2892428 - T 73 -4.4 -5.05113 | opp_overlap 2892427 2892423, overlap 2892423 TTTATATAAATAAAA CAGGAGTTGTGGAA CATA TTTTTCAACTCCTG CTTTATTTTCGTTTT Cthe_2422 2893590 - 2892517 - | hypothetical protein TERM 3140 2893753 - 2893720 - R 100 -10.3 -5.09426 | opp_overlap 2893725, overlap 2893725 TTTAATTTTAAAAAA TGAAAGCTCCGGGAT ACAC ACCCCGGAGCTTTTG CTAAGTTTTTTGAAT TERM 3141 2893748 - 2893725 - R 100 -14.6 -4.42765 | opp_overlap 2893725, overlap 2893720 TTTTAAAAAATGAAA GCTCCGGGAT ACAC ACCCCGGAGC TTTTGCTAAGTTTTT TERM 3142 2893725 - 2893748 + r 100 -12.4 -4.35675 | opp_overlap 2893725 2893720 TTTTAAAAAATGAAA GCTCCGGGAT ACAC ACCCCGGAGC TTTTGCTAAGTTTTT Cthe_2423 2896764 - 2893768 - | hypothetical protein TERM 3143 2895454 - 2895492 + g 73 -5.5 -4.65838 | gap 1, overlap 2895456 2895458 ATAGTAAAACTGTAC TGCATTTTTCC-GCCAAT TAGG ATTTGCGGGAGAAATGTA TTTTTCGACTGTGTC Cthe_2424 2897718 - 2896888 - | copper amine oxidase-like protein Cthe_2425 2898177 - 2899016 + | MotA/TolQ/ExbB proton channel Cthe_2426 2899030 - 2899830 + | OmpA/MotB TERM 3144 2899884 - 2899856 - f 70 -4 -5.10656 | gap 1, opp_overlap 2899848 2899856, overlap 2899851 2899858 ATTAAAATAATAAAA GGCTTTATGA-CA ACTT TGCTCATAAAGTC TTTTTTTGTTTCCGA TERM 3145 2899856 - 2899884 + F 100 -6.2 -5.95539 | gap 1, opp_overlap 2899856 2899851 2899858, overlap 2899848 ATTAAAATAATAAAA GGCTTTATGA-CA ACTT TGCTCATAAAGTC TTTTTTTGTTTCCGA Cthe_2427 2900096 - 2901052 + | hypothetical protein TERM 3146 2901123 - 2901149 + G 91 -10.8 -4.43221 | overlap 2901124 2901145 AGTCAGCGGATATTG ATACCCCGGCGT TGG AGGCCGGGGTAC TTTTGTGCCGTGTTT TERM 3147 2901124 - 2901148 + G 95 -14.3 -3.24848 | overlap 2901123 2901145 GTCAGCGGATATTGA TACCCCGGCGT TGG AGGCCGGGGTA CTTTTGTGCCGTGTT TERM 3148 2901269 - 2901232 - g 70 -3.6 -4.93898 | gap 1, overlap 2901233 AGAGGAGTATAAAAA GTTTACC-TTGTTTCTT GAGGA AAGAATCAAAGGAAAAC CTCTTCAATACATAA TERM 3149 2901641 - 2901611 - g 77 -10.6 -2.78384 | opp_overlap 2901618, overlap 2901618 CTTGCCGGCATTATA GCCCAAAGTCCTTT TGC AAAAGACTTTGAAC GCAAGGGAGAAGGAT Cthe_2428 2901065 - 2901973 + | HemK family modification methylase Cthe_2429 2903040 - 2901970 - | hypothetical protein Cthe_2430 2903648 - 2904967 + | electron transport complex, RnfABCDGE type, C subunit Cthe_2431 2904969 - 2905934 + | electron transport complex, RnfABCDGE type, D subunit Cthe_2432 2905918 - 2906511 + | electron transport complex, RnfABCDGE type, G subunit Cthe_2433 2906514 - 2907170 + | electron transport complex, RnfABCDGE type, E subunit TERM 3150 2907698 - 2907714 + G 74 -4.4 -4.90778 | gap 1, overlap 2907711 AAGGGACTTCCGATA GC-GCTG ATTT CAGCAGC TTTTGTTTCCCTGGC Cthe_2434 2907176 - 2907763 + | electron transport complex, RnfABCDGE type, A subunit TERM 3151 2908091 - 2908081 - g 71 -6.8 -4.07687 | ATTCTCGGCGTAAAA GCTG AAG CAGC TGTGGCGAAGGTTGC TERM 3152 2908435 - 2908450 + G 70 -9 -3.1247 | opp_overlap 2908434 2908435 GTGGTGAGAAAGAAT TGCACC GTGG GGTGCA TTGGCTGTGCAAAAT Cthe_2435 2907802 - 2908605 + | electron transport complex, RnfABCDGE type, B subunit TERM 3153 2908640 - 2908669 + T 73 -7.9 -3.71907 | opp_overlap 2908646, overlap 2908638 2908646 GTTTGGTTCTTTTGA CATAAAGCTCAGC GGAT GCTGAGCTTAATA TATTTGTAATTTTTA TERM 3154 2908646 - 2908663 + T 90 -11.3 -3.44444 | opp_overlap 2908646, overlap 2908640 2908638 TTCTTTTGACATAAA GCTCAGC GGAT GCTGAGC TTAATATATTTGTAA TERM 3155 2908663 - 2908646 - T 100 -11.3 -4.03234 | opp_overlap 2908646 2908640 2908638 TTCTTTTGACATAAA GCTCAGC GGAT GCTGAGC TTAATATATTTGTAA Cthe_2436 2908932 - 2908696 - | hypothetical protein TERM 3156 2909316 - 2909303 - g 89 -6.7 -5.18357 | CAATTGAGGAAAAAA CAGCT CTTG AGCTG AATGTCGAAAACCAT Cthe_2437 2909110 - 2909619 + | shikimate kinase TERM 3157 2909621 - 2909631 + F 72 -2.6 -5.33866 | opp_overlap 2909621, overlap 2909625 AAGAAGGAAAATAAA TTTT TAA AAAA TTTTTTATAAGTTTG TERM 3158 2909716 - 2909740 + F 90 -5 -5.80248 | overlap 2909717 TGACCCCCTTTACAT CGGTTAGTCT CTTGA GGACTAACCC TTTTTTTATGTGTTA TERM 3159 2909717 - 2909739 + F 82 -8.5 -4.05708 | overlap 2909716 GACCCCCTTTACATC GGTTAGTCT CTTGA GGACTAACC CTTTTTTTATGTGTT Cthe_2438 2909914 - 2910096 + | hypothetical protein Cthe_2439 2910132 - 2910611 + | GCN5-related N-acetyltransferase Cthe_2440 2910764 - 2911189 + | hypothetical protein TERM 3160 2911236 - 2911214 - T 95 -9.1 -5.22258 | opp_overlap 2911216 2911234, overlap 2911216 TAAATTAAAACAAAA TACCCGGGT GAAAT ACCCGGGTT AAATAATTTATATAA TERM 3161 2911216 - 2911234 + T 90 -12.4 -3.182 | opp_overlap 2911214 2911216 AATTAAAACAAAATA CCCGGGTG AAA TACCCGGG TTAAATAATTTATAT TERM 3162 2911234 - 2911216 - T 100 -11.7 -4.20163 | opp_overlap 2911216, overlap 2911214 AATTAAAACAAAATA CCCGGGT GAAAT ACCCGGG TTAAATAATTTATAT Cthe_2441 2912064 - 2911261 - | DeoR family transcriptional regulator Cthe_2442 2912358 - 2913842 + | carbohydrate kinase, FGGY Cthe_2443 2913848 - 2914684 + | transketolase subunit A Cthe_2444 2914681 - 2915622 + | transketolase subunit B Cthe_2445 2915703 - 2916746 + | alcohol dehydrogenase GroES-like protein TERM 3163 2916860 - 2916840 - f 88 -11.3 -3.25361 | AAATCTACAAGTTAA TTACCAGAA CTA TTCTGGTAA AAATAAAAAACTTGA TERM 3164 2916900 - 2916871 - f 100 -6.5 -5.93252 | overlap 2916873 GGTAAAAATAAAAAA CTTGAACACAAAA TAAA TGTTGTGTTCAGG AAAATAATTATGTGA TERM 3165 2917677 - 2917653 - g 79 -8.5 -4.128 | ATCCTGATATAGAAA TCGTTGACGAG CAG CGCGACAACGA CGAAGTTGAAAAGGC TERM 3166 2917971 - 2917958 - g 71 -5.3 -4.60041 | ATTGACGGTGAAAAA GTTGA AGAG TCAAC AGCAGTAGGTTCCAC Cthe_2446 2916929 - 2918047 + | ABC-type sugar transport system periplasmic component-like protein TERM 3167 2918230 - 2918278 + G 82 -10.6 -3.53091 | opp_overlap 2918233, overlap 2918220 2918233 2918276 CAATGGATATCGGAG AAATCTTTATGGAG-GGAAAACCG GTT CGGTTTTCCTCTCC-TAAAGATGC TTTAAAAAAGAGCAT TERM 3168 2918275 - 2918233 - g 100 -16.7 -3.91144 | opp_overlap 2918220 2918230 2918233 TGGATATCGGAGAAA TCTTTATGGAG-GGAAAACCG GTT CGGTTTTCCTCTCC-TAAAGA TGCTTTAAAAAAGAG TERM 3169 2918233 - 2918275 + G 100 -16.7 -2.90496 | opp_overlap 2918233, overlap 2918220 2918230 TGGATATCGGAGAAA TCTTTATGGAG-GGAAAACCG GTT CGGTTTTCCTCTCC-TAAAGA TGCTTTAAAAAAGAG Cthe_2447 2918049 - 2919536 + | ABC transporter related protein Cthe_2448 2919555 - 2920538 + | inner-membrane translocator Cthe_2449 2920540 - 2921154 + | phosphoglycerate mutase TERM 3170 2921151 - 2921183 + T 100 -10.2 -5.95946 | opp_overlap 2921151 AGATACACAATCAAA TTGATTTTATTGAT TTTGT GTCAATAAAATCAA TTTTTTTGTTGTTGG TERM 3171 2921183 - 2921151 - T 86 -9.5 -4.06964 | opp_overlap 2921151 AGATACACAATCAAA TTGATTTTATTGA TTTTGTG TCAATAAAATCAA TTTTTTTGTTGTTGG Cthe_2450 2921530 - 2921222 - | hypothetical protein TERM 3172 2921617 - 2921593 - R 71 -2.3 -5.40474 | opp_overlap 2921600 2921604, overlap 2921600 2921604 2921609 ACTTTTTTAAAAAAA CAAATGATAAT TAA ATTATAATTTA TATTACCAGGAAAAA Cthe_2451 2925150 - 2921887 - | SNF2-related protein TERM 3173 2925266 - 2925305 + r 72 -3.6 -5.1523 | gap 1, opp_overlap 2925266 2925268, overlap 2925267 2925268 2925270 CTGTAACCAGATAAA TATATCGCGAGTTC-AAAG CTG CTTCGGAACCCGCGATACG TTTTTATATTATAAA TERM 3174 2925305 - 2925266 - R 79 -8 -4.1347 | gap 1, opp_overlap 2925266 2925267 2925268 2925270, overlap 2925268 CTGTAACCAGATAAA TATATCGCGAGTT-CAAAG CTG CTTCGGAACCCGCGATACG TTTTTATATTATAAA TERM 3175 2925303 - 2925268 - R 100 -12.8 -3.66117 | gap 1, opp_overlap 2925268 2925267 2925266 2925270, overlap 2925266 GTAACCAGATAAATA TATCGCGAGTT-CAAAG CTG CTTCGGAACCCGCGATA CGTTTTTATATTATA Cthe_2452 2927173 - 2925365 - | oligopeptidase F TERM 3176 2925631 - 2925615 - G 71 -5.1 -4.57341 | opp_overlap 2925615 2925629 AAGCTGGTGTAAAAA TGGGGAA TTC TTGCCCA TTCCATGGATATTTC Cthe_2453 2927582 - 2927226 - | hypothetical protein TERM 3177 2927747 - 2927721 - R 100 -7.3 -5.67063 | TTTATTACAAAAAAA TGCGCCTTTCC AGGGA AGAAAGGTGCA ATAAATGGGTTTAGT Cthe_2454 2930921 - 2927793 - | fibronectin, type III TERM 3178 2930419 - 2930437 + g 86 -9.6 -4.05446 | GTTACAGAGGTGTTT TTGCCGGA AAC TTCGGCAA TTTGTCCTTCACCGG TERM 3179 2931220 - 2931196 - R 100 -12.2 -4.50976 | opp_overlap 2931189 2931196 GGGCACACCAGAAAA GGCCGGAAAA TCAAG CTTTCCGGCC TTTGATATTTTGACT TERM 3180 2931196 - 2931220 + r 100 -11.5 -4.0828 | opp_overlap 2931196, overlap 2931189 GGGCACACCAGAAAA GGCCGGAAA ATCAAGC TTTCCGGCC TTTGATATTTTGACT Cthe_2455 2932395 - 2931283 - | phage integrase TERM 3181 2931962 - 2932001 + g 77 -6.4 -4.57569 | overlap 2931964 2931966 ATTATAATCTGCCAG TTTACCGCATGTTTCAAC GCCA GGTGCAGCATGCGGTGTA TTTTTAAGACGGTGC TERM 3182 2931964 - 2931999 + g 79 -9 -3.90316 | overlap 2931962 2931966 TATAATCTGCCAGTT TACCGCATGTTTCAAC GCCA GGTGCAGCATGCGGTG TATTTTTAAGACGGT TERM 3183 2931966 - 2931997 + g 77 -9.4 -3.53855 | overlap 2931964 2931962 TAATCTGCCAGTTTA CCGCATGTTTCAAC GCCA GGTGCAGCATGCGG TGTATTTTTAAGACG Cthe_2456 2932875 - 2932453 - | nuclease Cthe_2457 2932954 - 2933160 + | hypothetical protein Cthe_2458 2933600 - 2933136 - | hypothetical protein Cthe_2459 2934070 - 2933630 - | hypothetical protein Cthe_2460 2934514 - 2934086 - | XRE family transcriptional regulator TERM 3184 2934605 - 2934578 - H 71 -5.6 -4.65168 | opp_overlap 2934569 2934600, overlap 2934564 2934579 2934600 ATTATAGTGCAAAAA TTTCACTTTGGC TATT GACAAAGTGAAG CAACTTCACTATAAT TERM 3185 2934604 - 2934579 - H 78 -9.1 -3.38378 | opp_overlap 2934569 2934600, overlap 2934578 2934564 2934600 TTATAGTGCAAAAAT TTCACTTTGGC TATT GACAAAGTGAA GCAACTTCACTATAA TERM 3186 2934614 - 2934600 - H 79 -8.6 -3.91897 | opp_overlap 2934600, overlap 2934579 2934578 2934564 TTGGCTATTGACAAA GTGAAG CAA CTTCAC TATAATTAATTTCGG TERM 3187 2934600 - 2934614 + H 72 -8.6 -2.99596 | opp_overlap 2934579 2934578 2934600 2934564 TTGGCTATTGACAAA GTGAAG CAA CTTCAC TATAATTAATTTCGG Cthe_2461 2934642 - 2934881 + | XRE family transcriptional regulator TERM 3188 2935073 - 2935047 - g 77 -10.2 -3.28708 | opp_overlap 2935044 GAAAGGTTAGATGAA GATGAGCGGAAT ACA ATTCCGGTCACC GACTCACTTGGAAGA Cthe_2462 2934900 - 2935646 + | BRO-like protein Cthe_2463 2935643 - 2935867 + | DNA binding domain-containing protein TERM 3189 2935893 - 2935878 - f 95 -9 -5.18371 | overlap 2935873 GGTGATAAAAGAAAA GCCGTT TTCA AACGGC ACAAACAAAAACCAC TERM 3190 2935950 - 2935905 - f 100 -9.1 -5.38054 | overlap 2935906 2935908 2935913 CGGCACAAACAAAAA CCACTACACCCTCATTATACC ACAA GGTGTAATGAGGGGGCAATAA GGGGGAGCGAGAATG TERM 3191 2935949 - 2935906 - f 89 -10.4 -3.81748 | overlap 2935905 2935908 2935913 GGCACAAACAAAAAC CACTACACCCTCATTATACC ACAA GGTGTAATGAGGGGGCAATA AGGGGGAGCGAGAAT TERM 3192 2935947 - 2935908 - f 87 -10.8 -3.47541 | overlap 2935906 2935905 2935913 CACAAACAAAAACCA CTACACCCTCATTATACC ACAA GGTGTAATGAGGGGGCAA TAAGGGGGAGCGAGA TERM 3193 2935942 - 2935913 - f 100 -13.7 -2.94827 | overlap 2935908 2935906 2935905 ACAAAAACCACTACA CCCTCATTATACC ACAA GGTGTAATGAGGG GGCAATAAGGGGGAG TERM 3194 2936426 - 2936394 - f 81 -9.9 -3.17763 | TGTATATCGTAGCAA TTGCTGCTGGTGC GGTACTG ACACCGGCAGCAA TCCGAACAGCAACAC Cthe_2464 2936562 - 2937113 + | hypothetical protein Cthe_2465 2937114 - 2938019 + | hypothetical protein TERM 3195 2938028 - 2938008 - f 73 -7.5 -3.73647 | overlap 2938005 CTGACGGAGGAAGAA CTCCCGTTC TAA AAACGGGCG AAGCTAGTTCTGTAA Cthe_2466 2938591 - 2939673 + | hypothetical protein Cthe_2467 2939670 - 2940506 + | hypothetical protein TERM 3196 2940860 - 2940848 - g 83 -4.9 -5.26158 | TAAAGAAAAAAGAAA TCAAA GAA TTTGA AGGACAGGAGTTGTG Cthe_2468 2940508 - 2940882 + | hypothetical protein Cthe_2469 2940930 - 2941352 + | RinA family phage transcriptional regulator Cthe_2470 2941811 - 2942653 + | DNA adenine methylase Cthe_2471 2942646 - 2943926 + | hypothetical protein TERM 3197 2944018 - 2944037 + F 100 -11.4 -4.16284 | ATACTTTCCTCTTCA GCCCGGTT GCTC AGCCGGGC TTTGTTGAAAAATAT Cthe_2472 2944119 - 2944964 + | hypothetical protein Cthe_2473 2945216 - 2945665 + | terminase small subunit TERM 3198 2946238 - 2946266 + G 100 -11.8 -5.4505 | ATAGCACGTATTTGA CTGTTCCTCGAG ATTGG CTTGGGGAACAG TTTTTTATTGAGGCA Cthe_2474 2945643 - 2946899 + | PBSX family phage terminase large subunit TERM 3199 2947107 - 2947093 - g 75 -10 -3.05521 | ATGACATCCTTAACA GGCGTA TAG TACGCC ATACAGAGAGCGGAG Cthe_2475 2946915 - 2948348 + | SPP1 family phage portal protein Cthe_2476 2948505 - 2949914 + | SPP1 family phage head morphogenesis protein Cthe_2477 2949911 - 2950117 + | hypothetical protein TERM 3200 2950149 - 2950119 - f 100 -13.5 -3.74178 | opp_overlap 2950119 2950147, overlap 2950112 TAATGAAAGGCTAAA CACCATCTATCAT GAATA ACGATAGATGGTG TTTTTATATCTATGG TERM 3201 2950119 - 2950149 + F 100 -11.3 -5.07275 | opp_overlap 2950112 2950119, overlap 2950147 TAATGAAAGGCTAAA CACCATCTATCAT GAATA ACGATAGATGGTG TTTTTATATCTATGG TERM 3202 2950162 - 2950193 + F 87 -11 -3.39289 | opp_overlap 2950167, overlap 2950147 2950167 GTGTTTTTATATCTA TGGAAGCACTTGGT GAAG GCCAAGTGCTTTTA TTATGCCGTCTTTTC TERM 3203 2950167 - 2950188 + F 100 -10.9 -4.78237 | opp_overlap 2950167, overlap 2950147 2950162 TTTATATCTATGGAA GCACTTGGT GAAG GCCAAGTGC TTTTATTATGCCGTC TERM 3204 2950188 - 2950167 - f 81 -10.2 -3.09015 | opp_overlap 2950147 2950167 2950162 TTTATATCTATGGAA GCACTTGG TGAAGG CCAAGTGC TTTTATTATGCCGTC TERM 3205 2950390 - 2950375 - g 80 -6.2 -4.77216 | opp_overlap 2950375 AAGAAGATTTAAAAA GCTTTA TCCC TAAAGC TAGATTTGATGAAGT Cthe_2478 2950290 - 2950847 + | phage minor structural GP20 TERM 3206 2951471 - 2951461 - g 76 -6.8 -4.3467 | AGGGGGATATTAAAA CCTC GGT GAGG GCTATTGATAACAAC Cthe_2479 2950866 - 2951789 + | Lj928 prophage protein TERM 3207 2951963 - 2951924 - f 77 -2.9 -5.52079 | gap 2, opp_overlap 2951928 2951930 2951956, overlap 2951925 2951933 2951936 AGAGGAAAAGAAAAA GGATGAGAAGAAGGCTGCT AAAT AGCGGCCTTCTCC-C-TCT TTTCTACCCTAAAAG TERM 3208 2951928 - 2951962 + G 90 -10.1 -4.4009 | gap 1, opp_overlap 2951925 2951924 2951933 2951936, overlap 2951930 2951956 GAAAAGAAAAAGGAT GA-GAAGAAGGCTGCT AAAT AGCGGCCTTCTCCCTC TTTTCTACCCTAAAA TERM 3209 2951930 - 2951959 + G 90 -12.9 -2.88044 | opp_overlap 2951925 2951924 2951933 2951936, overlap 2951928 2951956 AAAGAAAAAGGATGA GAAGAAGGCTGCT AAAT AGCGGCCTTCTCC CTCTTTTCTACCCTA TERM 3210 2951956 - 2951933 - g 82 -11 -3.53718 | opp_overlap 2951930 2951928, overlap 2951925 2951924 2951936 GAAAAAGGATGAGAA GAAGGCTGCT AAAT AGCGGCCTTC TCCCTCTTTTCTACC Cthe_2480 2951926 - 2952327 + | hypothetical protein Cthe_2481 2952324 - 2952659 + | hypothetical protein TERM 3211 2952800 - 2952813 + G 70 -8.1 -3.72576 | opp_overlap 2952799 GCCAAAAGAAATACG CCGGT GGAT ACCGG TTTCATGCGGCGAAG Cthe_2482 2952656 - 2953066 + | hypothetical protein Cthe_2483 2953056 - 2953475 + | hypothetical protein Cthe_2484 2954927 - 2953638 - | transposase IS116/IS110/IS902 TERM 3212 2954530 - 2954554 + g 75 -10.1 -3.10098 | opp_overlap 2954534, overlap 2954527 2954534 AGGCTTCGCAGACAT TCAATATCCTC GTC GGGGATATTGG TAGTTTTAAGCTCCT Cthe_2485 2955379 - 2956425 + | hypothetical protein Cthe_2486 2956446 - 2956922 + | hypothetical protein Cthe_2487 2956939 - 2957352 + | hypothetical protein TERM 3213 2957356 - 2957346 - f 74 -3.2 -5.37865 | opp_overlap 2957354, overlap 2957353 TGAAGAAGTAAAAAA CGCA TAA TGCA AGGCGATCCTGAGTT Cthe_2488 2957545 - 2959380 + | phage tape measure protein Cthe_2489 2959377 - 2960036 + | peptidoglycan-binding LysM TERM 3214 2960506 - 2960487 - g 70 -9.3 -3.1676 | overlap 2960485 ACACACTGATGAATA CAGGCAG ATGGTA CTGCCTG CGCGATGAGTTCGGC Cthe_2490 2960033 - 2960977 + | hypothetical protein Cthe_2491 2961204 - 2961599 + | hypothetical protein Cthe_2492 2961599 - 2962657 + | baseplate J-like protein Cthe_2493 2962647 - 2963249 + | phage-like element PBSX protein Cthe_2494 2963259 - 2963543 + | hypothetical protein Cthe_2495 2963546 - 2964928 + | hypothetical protein Cthe_2496 2964933 - 2965253 + | hypothetical protein TERM 3215 2965426 - 2965465 + F 80 -7.2 -4.61482 | overlap 2965423 2965430 2965432 TATTTTTTATTGCCT TTTTTTGAGGACTTACCT TTTA AGGTAGGTCCTCTATTAA TTGTTTTTTAGAAAG TERM 3216 2965430 - 2965461 + F 100 -12.4 -3.79788 | overlap 2965426 2965423 2965432 TTTTATTGCCTTTTT TTGAGGACTTACCT TTTA AGGTAGGTCCTCTA TTAATTGTTTTTTAG TERM 3217 2965432 - 2965459 + F 100 -15 -3.45181 | overlap 2965430 2965426 2965423 TTATTGCCTTTTTTT GAGGACTTACCT TTTA AGGTAGGTCCTC TATTAATTGTTTTTT Cthe_2497 2965495 - 2965785 + | hypothetical protein TERM 3218 2965876 - 2965848 - g 70 -8.7 -3.37876 | AACAACACCTTACAA CCGTCGCCCCGGA TAT TCCATGACGCCGG AATATATCACAATAC Cthe_2498 2965801 - 2966457 + | N-acetylmuramoyl-L-alanine amidase TERM 3219 2966465 - 2966455 - f 74 -4 -5.24129 | TTGGCTGAGAAAAAA TGAA ATT TTCA AAGGTAATCGTATCA Cthe_2499 2966549 - 2966896 + | hypothetical protein TERM 3220 2966885 - 2966904 + F 100 -13.6 -5.76633 | opp_overlap 2966876 ACAAAGCAGTTCCCC GAGGGGCA GTGA TGCCCCTC TTTTTTTGTCTCTGG Cthe_2500 2967070 - 2967705 + | hypothetical protein Cthe_2501 2967690 - 2968121 + | hypothetical protein TERM 3221 2968167 - 2968135 - f 100 -9.9 -5.77856 | gap 1, opp_overlap 2968138 2968152 AATAAACGAAAAAAA GAGCGGC-AACCCC ACCCGA GCGGTTAGCCGCTC TTTTTTGCAAACATT TERM 3222 2968152 - 2968167 + F 100 -10.4 -5.01732 | opp_overlap 2968135, overlap 2968138 GCGGCAACCCCACCC GAGCGG TTAG CCGCTC TTTTTTGCAAACATT TERM 3223 2968364 - 2968402 + F 91 -11.9 -3.42315 | opp_overlap 2968366 2968371, overlap 2968366 2968371 TCCCTTTGGGCACAC CAGAAAAGCCGTTAACC ATTCA GGTTGATGGCTTTTCTA ATTTTTAACTCTAAT TERM 3224 2968366 - 2968400 + F 100 -14.5 -3.27476 | opp_overlap 2968366 2968371, overlap 2968364 2968371 CCTTTGGGCACACCA GAAAAGCCGTTAACC ATTCA GGTTGATGGCTTTTC TAATTTTTAACTCTA TERM 3225 2968400 - 2968366 - f 77 -10.1 -2.62184 | opp_overlap 2968366 2968364 2968371, overlap 2968371 CCTTTGGGCACACCA GAAAAGCCGTTAACC ATTCA GGTTGATGGCTTTTC TAATTTTTAACTCTA TERM 3226 2968371 - 2968395 + F 89 -8.6 -4.72556 | opp_overlap 2968366 2968371, overlap 2968366 2968364 GGGCACACCAGAAAA GCCGTTAACC ATTCA GGTTGATGGC TTTTCTAATTTTTAA TERM 3227 2968736 - 2968723 - g 72 -9.5 -3.02013 | ATGGCAAGAACGAGA CGCCC ATAG GGGCG GTGATGGTTAAGGAT Cthe_2502 2968641 - 2969126 + | tRNA-adenosine deaminase TERM 3228 2969323 - 2969357 + F 100 -17.3 -4.88163 | opp_overlap 2969326 CACCGTCTCCGCCAC GAACCTGTTTGCGGG AAATA TCCGCAGACAGGTTC TTTATTTTATGTTAA TERM 3229 2969354 - 2969326 - f 83 -10.3 -3.14132 | opp_overlap 2969323 CGTCTCCGCCACGAA CCTGTTTGCGG GAAATAT CCGCAGACAGG TTCTTTATTTTATGT Cthe_2503 2969562 - 2970170 + | cupin 2, barrel Cthe_2504 2971488 - 2970199 - | hypothetical protein TERM 3230 2970241 - 2970273 + g 85 -9.2 -4.27117 | TCGTACTCCAAATTT CATGGCGGATTCAT TTACT ATGGATTCGCCAGG TTTGTCTTCTCCGAA TERM 3231 2970473 - 2970488 + g 75 -8.2 -4.0896 | overlap 2970474 TATGTAATTCCGTAC TCCGGG TGGT CCCGGG TTTTGCCGCAGCTTT TERM 3232 2970474 - 2970487 + g 72 -9.5 -3.04894 | overlap 2970473 ATGTAATTCCGTACT CCGGG TGGT CCCGG GTTTTGCCGCAGCTT TERM 3233 2970699 - 2970710 + g 83 -3.6 -5.58209 | GGGCACTTGGCTGTA CGGT GCCG GCCG TTTTTTTCAGTTTGC TERM 3234 2970866 - 2970887 + g 75 -10.2 -3.09635 | overlap 2970863 TCAGGTATATTGCTT GCAGCATC AAGTTC GATGCTGC TTACATACTCAGACT TERM 3235 2971346 - 2971362 + g 85 -2.9 -5.75342 | overlap 2971347 ATCTTGTTTACCGCA TCTGCAA AAA TTGCGGC TTTTTTTTGCGGGGA TERM 3236 2971429 - 2971447 + g 82 -3.8 -5.37865 | overlap 2971431 GTCGGATACATTTTT TTGGGTAA GAA TTTCCCGA TTTTTTAATTCTTCA Cthe_2505 2972561 - 2971533 - | LacI family transcription regulator TERM 3237 2972023 - 2972037 + g 70 -8.6 -3.32202 | overlap 2972022 CCTATACTCCTGTGT CCTGAT TTG ATCAGG TATTCTGTGGCAGTA TERM 3238 2972439 - 2972458 + g 79 -5 -5.17576 | overlap 2972427 2972425 ATATTTTTCGGCTGT CCGGAGAA TCTC TTTTCTGG TTTTTTCACTTACTC TERM 3239 2972798 - 2972809 + H 71 -2.2 -5.45652 | TCTGGATTGGCAGTT CGTA TTTT TGCG TTTTTTCTTCAAAAT TERM 3240 2973082 - 2973068 - g 76 -7.2 -4.23434 | GAAAAGATTGGAAAA GTTTTG AGG CAAAAC AAGTCTATAATTTCC TERM 3241 2974933 - 2974878 - g 90 -13.3 -2.54523 | overlap 2974839 2974838 2974836 2974908 CGACACCGGAACCGA GTCCGACATCGACGCCGACACCGGA ACCGAG TCCGACATCGACGCCGACACCGGAA CCAGAACCGGAGCCG TERM 3242 2974962 - 2974908 - g 90 -12.9 -2.54523 | gap 1, overlap 2974878 2974940 CGACACCGGAACCGA GTCCGACATCGACGCCGACACCGG AACCAGAA CCGGAGCCGACATCGACGCCG-AC ACCGGAACTGAGCCC TERM 3243 2974967 - 2974940 - g 74 -9 -3.52093 | overlap 2974908 ACACCGGAACCAGAA CCGGAGCCGACA TCGA CGCCGACACCGG AACTGAGCCCAAGCT Cthe_2506 2973047 - 2976088 + | S-layer-like domain-containing protein TERM 3244 2976211 - 2976266 + F 100 -11.7 -4.39998 | gap 2, opp_overlap 2976211 2976222 2976224 2976239 ATTTATGTTAACAAG CCTCCTATGAAGATTTATTTGCATATT ATGC AATATGCAAAT-A-TCTTTGTAGGGGG TTTATTATGTCAATG Cthe_2507 2976273 - 2977088 + | peptidase U57, YabG TERM 3245 2979646 - 2979659 + G 73 -6.7 -4.24422 | CATTGGGGCAGGTTT GGGAA TTTG TTCCC TTTCATTTCTTATAA Cthe_2510 2979440 - 2980297 + | hypothetical protein TERM 3246 2980380 - 2980346 - f 74 -5.6 -4.74406 | opp_overlap 2980349, overlap 2980349 AGAAAAAAAGAGAAA GAAGCAGCTTCGGATA AAA TTTCCGTTGCTGCTTT TTTGAATGTGGTTGG TERM 3247 2980377 - 2980349 - f 79 -7.3 -4.38412 | opp_overlap 2980349, overlap 2980346 AAAAAAGAGAAAGAA GCAGCTTCGGATA AAA TTTCCGTTGCTGC TTTTTTGAATGTGGT TERM 3248 2980349 - 2980377 + F 91 -7.3 -5.13473 | opp_overlap 2980346 2980349 AAAAAAGAGAAAGAA GCAGCTTCGGATA AAA TTTCCGTTGCTGC TTTTTTGAATGTGGT TERM 3249 2980432 - 2980417 - f 100 -9 -5.75342 | TTTTCTGAAAAAAAA CCCGTA TAAC TACGGG AACTGGTATTAGAGA TERM 3250 2980465 - 2980448 - f 71 -8.5 -2.94595 | opp_overlap 2980448 AACTGGTATTAGAGA GGGAAAA AAAC TTTTCCC TTGGATTTCTGTTTA TERM 3251 2980448 - 2980465 + F 76 -8.5 -3.39488 | opp_overlap 2980448 AACTGGTATTAGAGA GGGAAAA AAAC TTTTCCC TTGGATTTCTGTTTA TERM 3252 2981512 - 2981487 - g 71 -6.1 -4.24948 | GGATTACAGCCAAAA CACTTCCGGGT GCGC ACTGGGAAGTG GAAAGAAGAATAAGG Cthe_2511 2980727 - 2981575 + | MscS mechanosensitive ion channel TERM 3253 2981827 - 2981814 - g 80 -2.3 -5.63103 | GTGGAACTAAAAAAA CAGCA TCCG TGCGG CAGCAAACAGTGGGA Cthe_2512 2981769 - 2981969 + | hypothetical protein TERM 3254 2982775 - 2982786 + G 73 -7.2 -4.11216 | opp_overlap 2982773 2982775 TAAATCCCGGAAACA GCGG CGGA CCGC TTTTGAACCTGAAAG TERM 3255 2983099 - 2983119 + G 71 -6.1 -4.15044 | opp_overlap 2983093 AGGAGATAAGCACGA TGATGCAGC TAA GATGCGTCA TTTATTCAAAAAAAC Cthe_2513 2982057 - 2983235 + | peptidase S1 and S6, chymotrypsin/Hap Cthe_2514 2983341 - 2983634 + | hypothetical protein Cthe_2515 2983784 - 2984248 + | guanine deaminase TERM 3256 2984497 - 2984544 + F 88 -9.2 -4.27483 | opp_overlap 2984498, overlap 2984493 2984498 CCACGTTGGACATAA TCCCTTCGTCCCTGCAGACA ATAGAACA TGTTTGCGGAGATGAGGGGG TTTAATTTTATAAAT TERM 3257 2984498 - 2984543 + F 83 -10.5 -3.15405 | opp_overlap 2984498, overlap 2984497 2984493 CACGTTGGACATAAT CCCTTCGTCCCTGCAGACA ATAGAACA TGTTTGCGGAGATGAGGGG GTTTAATTTTATAAA TERM 3258 2984809 - 2984754 - g 71 -6 -4.25859 | TGGAATCTAAAATAA GGCATATACTCACCAGGCATGAACAG GGAG CTGCCCATGCCGCCAGCGGATATGCC AGAACAACGGGAAGG TERM 3259 2985039 - 2985025 - g 70 -2.8 -5.02074 | overlap 2985026 TTATTTGGTAAAAAA CGCAAA GGA TTTGCC CCGGGTTTTAAAGGA TERM 3260 2985177 - 2985167 - g 79 -6.8 -4.52857 | AGTGTTGATATAAAA GGCT ACA AGCC AAATTTAAAAGGCCA TERM 3261 2985258 - 2985242 - g 80 -2.2 -5.61824 | overlap 2985233 GAAAAGGCAAAAAAA CCGG TTATTTGCG CCGG GGGAGGAGTGATTAA TERM 3262 2985858 - 2985832 - g 81 -7.2 -4.56597 | overlap 2985833 2985850 TTTTGGTGTCAAAAA GCCCCGGACCTT TAT AACGTCCGGAGG TCTGGGTACCATGGG TERM 3263 2985857 - 2985833 - g 80 -10.7 -3.33744 | overlap 2985832 2985850 TTTGGTGTCAAAAAG CCCCGGACCTT TAT AACGTCCGGAG GTCTGGGTACCATGG Cthe_2516 2984630 - 2986258 + | acetolactate synthase, large subunit Cthe_2517 2986290 - 2986802 + | acetolactate synthase, small subunit Cthe_2518 2986810 - 2987805 + | ketol-acid reductoisomerase TERM 3264 2987823 - 2987855 + F 100 -14.3 -3.3341 | opp_overlap 2987819 2987818 AGATTAAAAGGCTGA TTCCCGACCTTCC CTTTTGA GGAAGGTTGGGAA TTGTAAAGCATTTTT TERM 3265 2988031 - 2988052 + G 74 -3.7 -5.0133 | gap 1, overlap 2988038 AGCAGGTAACCCGGG CTCCA-ACCC AAA GGATTTGGAG TTTTTTGACAGAATA Cthe_2519 2987849 - 2989468 + | alpha-isopropylmalate/homocitrate synthase family transferase Cthe_2520 2989508 - 2989765 + | hypothetical protein Cthe_2521 2989961 - 2990668 + | putative RNA polymerase sigma factor SigI TERM 3266 2991937 - 2991927 - g 78 -4 -5.29716 | TGAAGACAACAAAAA CATT AAC AATG GCAGCTGCCCCCAAT TERM 3267 2992255 - 2992240 - g 74 -6.1 -4.4522 | GAAAAGGAGAATAAA CCGGA CAGACC TCCGG AGCCGGGAAAAGAAA Cthe_2522 2990668 - 2992290 + | membrane associated protein TERM 3268 2992365 - 2992310 - f 95 -11.6 -3.84808 | gap 1, opp_overlap 2992311, overlap 2992307 2992304 2992311 TCCAAGCGACAATAA CCGTTGCCGGTTTTTAATTAAGTTT ATCTGTG AAACTTAATTAA-AACCGGCAATGT TTATATAATACGAAG TERM 3269 2992364 - 2992311 - f 100 -15.1 -2.90403 | gap 1, opp_overlap 2992311, overlap 2992307 2992304 2992310 CCAAGCGACAATAAC CGTTGCCGGTTTTTAATTAAGTTT ATCTGTG AAACTTAATTAA-AACCGGCAATG TTTATATAATACGAA TERM 3270 2992311 - 2992364 + F 100 -17.3 -4.08706 | gap 1, opp_overlap 2992307 2992304 2992311 2992310 CCAAGCGACAATAAC CGTTGCCGGTTTTTAATTAAGTTT ATCTGTG AAACTTAATTAA-AACCGGCAATG TTTATATAATACGAA Cthe_2523 2992484 - 2992864 + | hypothetical protein TERM 3271 2992904 - 2992940 + F 85 -11.1 -3.27382 | opp_overlap 2992903 2992904 2992908, overlap 2992899 2992908 CTCATCACTTTAAAT TAAACCAAGTGCTCTAT CAG ATAAAGTGCTTGGTTTA TATATGTTTATTCAA TERM 3272 2992940 - 2992904 - f 72 -8.9 -2.77043 | opp_overlap 2992904 2992899 2992908, overlap 2992903 2992908 CTCATCACTTTAAAT TAAACCAAGTGCTCTAT CAG ATAAAGTGCTTGGTTTA TATATGTTTATTCAA TERM 3273 2992908 - 2992936 + F 80 -7.5 -4.25527 | opp_overlap 2992904 2992903 2992908, overlap 2992904 2992899 TCACTTTAAATTAAA CCAAGTGCTCTAT CAG ATAAAGTGCTTGG TTTATATATGTTTAT Cthe_2524 2993134 - 2993577 + | BadM/Rrf2 family transcriptional regulator TERM 3274 2994264 - 2994254 - g 72 -3.2 -5.02476 | ACATCGGCCAAAAAA GTGA AAA CCAC ACTGAAACTTAGCAG Cthe_2525 2993807 - 2994802 + | glutamyl-tRNA reductase Cthe_2526 2994844 - 2995272 + | precorrin-2 oxidase / ferrochelatase Cthe_2527 2995247 - 2996125 + | hydroxymethylbilane synthase TERM 3275 2996478 - 2996454 - g 89 -9.4 -4.25104 | gap 1 GTTCTTGCATCAAAA CGGCA-TACCT TTTG AGGTAGTGCCG GGCATTACTTCGGCA TERM 3276 2996742 - 2996730 - g 73 -5.5 -4.55287 | overlap 2996731 GGCAGTGATAGAAAA CGGCA CAA TGCCA AACCAAAGAAAATTT TERM 3277 2996765 - 2996755 - g 74 -4 -5.04868 | CCAAACCAAAGAAAA TTTG TTT CAAA GCTTTGTGACATCCC TERM 3278 2996959 - 2996944 - g 76 -9 -3.65529 | AGATTGGCAGGCAAA CTCCGA GGGC TCGGAG CACATGTAGTTGAAT TERM 3279 2997278 - 2997248 - g 85 -9.1 -4.2018 | AAAGCGGCAAAATAA GCCCTGAAGACAA AGTGG TTATTTTCAGGGC AAAGGACGGAACCCA TERM 3280 2997494 - 2997476 - g 80 -6 -4.69664 | overlap 2997477 TAGATTATTCAAAAA TCAATGCA ATA TGCATTGG AGAACAAACAGCCAA TERM 3281 2997493 - 2997477 - g 75 -9.5 -3.41075 | overlap 2997476 AGATTATTCAAAAAT CAATGCA ATA TGCATTG GAGAACAAACAGCCA Cthe_2528 2996125 - 2997606 + | uroporphyrinogen-III synthase / uroporphyrinogen-III C-methyltransferase TERM 3282 2997711 - 2997660 - f 89 -12.6 -2.52795 | overlap 2997648 2997679 2997684 AAGCCTGCTAACGGA GGTGAAGAAAAATATGGAAGAAAC CCAA GTTTCTGGAACATTTTTCTTCACC GGAAAACGAGGATTT Cthe_2529 2997875 - 2998855 + | delta-aminolevulinic acid dehydratase Cthe_2530 2998855 - 3000138 + | glutamate-1-semialdehyde 2,1-aminomutase TERM 3283 3000378 - 3000358 - f 79 -8.4 -4.04474 | opp_overlap 3000357 3000358 ATAGTGTGATATAAA TTAAAGGG GATGA CCCTTTAA ATTTTAACTTAAAAC TERM 3284 3000358 - 3000378 + F 70 -8.4 -3.16068 | opp_overlap 3000358, overlap 3000357 ATAGTGTGATATAAA TTAAAGGG GATGA CCCTTTAA ATTTTAACTTAAAAC Cthe_2531 3000447 - 3001517 + | sulfate ABC transporter, periplasmic sulfate-binding protein TERM 3285 3002128 - 3002147 + G 75 -10 -3.16323 | overlap 3002111 TTTGCAGAGTTATTC TGCCGGAA TTGT TTCCGGCG TTGATAACAGGTTTT Cthe_2532 3001542 - 3002390 + | sulfate ABC transporter, inner membrane subunit CysT Cthe_2533 3002477 - 3003361 + | sulfate ABC transporter, inner membrane subunit CysW Cthe_2534 3003404 - 3004468 + | sulfate ABC transporter, ATPase subunit TERM 3286 3005236 - 3005220 - g 76 -3.6 -5.252 | overlap 3005222 3005223 GACCCTGACAAAAAA GAGTGC GGGCT GCACGC AAGAGTGGGACAGGT Cthe_2535 3004536 - 3005255 + | phosphoadenylylsulfate reductase (thioredoxin) Cthe_2536 3005543 - 3006424 + | sulfate adenylyltransferase subunit 2 TERM 3287 3006742 - 3006756 + G 100 -12.8 -4.30576 | TTACGGGAGCGTCCC GGGCGG AAG CCGCCC TTTTGGTAATAGACG TERM 3288 3007842 - 3007826 - g 78 -3.7 -5.18643 | overlap 3007827 CGAAGGAAAAGAAAA GGATATC CAG GATATCG GAAGACAATTGGAAG Cthe_2537 3006426 - 3008225 + | adenylylsulfate kinase / sulfate adenylyltransferase subunit 1 Cthe_2538 3008243 - 3008452 + | thiamine biosynthesis protein ThiS Cthe_2539 3008449 - 3009261 + | UBA/THIF-type NAD/FAD binding fold TERM 3289 3009596 - 3009572 - g 80 -11.5 -2.75727 | opp_overlap 3009573, overlap 3009571 GGAAGAGGACATAAG GCTTGCCTTTG ATC CAAAGGCAAGT TATTTGATATTATCA TERM 3290 3009573 - 3009595 + G 100 -15 -4.10459 | opp_overlap 3009572 3009571 GAAGAGGACATAAGG CTTGCCTTTG ATC CAAAGGCAAG TTATTTGATATTATC Cthe_2540 3009285 - 3009704 + | Mov34/MPN/PAD-1 Cthe_2541 3009705 - 3010577 + | nitrite and sulphite reductase 4Fe-4S region Cthe_2542 3010615 - 3010860 + | SirA-like protein TERM 3291 3010902 - 3010865 - T 100 -15.9 -4.77157 | gap 1, opp_overlap 3010854 3010865 GCAAGGTATGAAAAA TTATACCGTTC-CTGGCA TTA TGCCAACGAACGGTATAA TTTGAAAACTAAGAT TERM 3292 3010865 - 3010902 + T 100 -13.7 -3.55563 | gap 1, opp_overlap 3010865, overlap 3010854 GCAAGGTATGAAAAA TTATACCGTTC-CTGGCA TTA TGCCAACGAACGGTATAA TTTGAAAACTAAGAT Cthe_2543 3012331 - 3010934 - | spore germination protein-like protein TERM 3293 3012272 - 3012293 + g 70 -8.1 -3.617 | overlap 3012267 3012270 TCTCTTTTTCTCTTC TTCCGAAAG ATGA TTTTCGGAA TATTTAATTATGTCT Cthe_2544 3012897 - 3012334 - | ECF subfamily RNA polymerase sigma-24 factor TERM 3294 3012680 - 3012700 + g 83 -9.7 -3.91357 | opp_overlap 3012678 3012683, overlap 3012683 GCTATACGGTAAATC CAAGTGGAG AAA CTCCACCTG TTGTTGTACTTATAC TERM 3295 3012697 - 3012683 - G 77 -10 -3.28765 | opp_overlap 3012680 3012683, overlap 3012678 ATACGGTAAATCCAA GTGGAG AAA CTCCAC CTGTTGTTGTACTTA TERM 3296 3012683 - 3012697 + g 72 -10 -2.71074 | opp_overlap 3012683 3012678, overlap 3012680 ATACGGTAAATCCAA GTGGAG AAA CTCCAC CTGTTGTTGTACTTA TERM 3297 3013183 - 3013154 - R 74 -7.9 -3.86975 | opp_overlap 3013154 ATAATTCAAAGATAA GGCCAAGGTTCAT TTTT ATGAAACCTGACC TTTGAATACGTTATA Cthe_2545 3014322 - 3013237 - | signal transduction histidine kinase regulating citrate/malate metabolism TERM 3298 3014645 - 3014657 + H 75 -4.9 -4.96276 | GCCGTCGCAGCTCTT TACAA TAA TTGTA TTTTCCTTTTTTTGT Cthe_2547 3015507 - 3015833 + | hypothetical protein TERM 3299 3015903 - 3015883 - f 73 -7.6 -3.5882 | opp_overlap 3015883 TATAGGATTTGGAAA GTCTCACC GCATG GATGAGAC TTTTATTTTAAAGCA TERM 3300 3015883 - 3015903 + F 82 -6.2 -5.07652 | gap 1, opp_overlap 3015883 TATAGGATTTGGAAA GTCTCA-CC GCAT GGATGAGAC TTTTATTTTAAAGCA TERM 3301 3016051 - 3016041 - g 83 -3.2 -5.56112 | ACAAAAATGAAAAAA GCCA GAA TGAC CGTTGACAAAGATTA TERM 3302 3016087 - 3016072 - g 73 -5.4 -4.59207 | opp_overlap 3016074, overlap 3016074 ACAAAGATTATAAAA TTGCCG AGAT CGACAA GCGTATCTACGGCTC TERM 3303 3016349 - 3016335 - g 80 -10 -3.68757 | opp_overlap 3016334 3016335 TGGAAAAGTATAGAA CCCAAC CAG GTTGGG ATTAATGAATTTGCA TERM 3304 3016335 - 3016349 + G 72 -10 -2.54732 | opp_overlap 3016335, overlap 3016334 TGGAAAAGTATAGAA CCCAAC CAG GTTGGG ATTAATGAATTTGCA TERM 3305 3017442 - 3017473 + G 71 -9.6 -2.8829 | gap 1, opp_overlap 3017470, overlap 3017441 3017444 3017470 3017472 AGTGTAAATGGTGAG GAGG-TATATCCGAA AAA TTCGGATAAATCCTC ATTTGATGATGGTAT Cthe_2548 3016032 - 3017543 + | Alpha-N-arabinofuranosidase Cthe_2549 3017939 - 3018913 + | cellulosome enzyme, dockerin type I TERM 3306 3018962 - 3018935 - T 90 -10 -4.13767 | opp_overlap 3018935 GGGCGCACGCTAAAA TAGCCAAAGC ACTTTAAA GCTTTGGCTA TTTTTATGAAATTGG TERM 3307 3018935 - 3018962 + T 100 -10 -4.87786 | opp_overlap 3018935 GGGCGCACGCTAAAA TAGCCAAAGC ACTTTAAA GCTTTGGCTA TTTTTATGAAATTGG Cthe_2550 3020133 - 3019150 - | glycosyl transferase TERM 3308 3019390 - 3019413 + g 71 -3.8 -4.96501 | opp_overlap 3019390, overlap 3019394 CAGTTCGCCAATATA TCCCTTGCCA AATA TGGCAATGCA TTTATTTTTGTAAGG Cthe_2551 3021206 - 3020172 - | radical SAM family protein Cthe_2552 3022225 - 3021203 - | radical SAM family protein Cthe_2553 3023284 - 3022259 - | radical SAM family protein TERM 3309 3022582 - 3022596 + g 89 -4.3 -5.53288 | CATTGTAAAAGTTTT TAGTG CCGTC CACTA TTTTTTTGAGTTCAC Cthe_2554 3024521 - 3023268 - | glycosyl transferase, group 1 TERM 3310 3023994 - 3024018 + g 73 -2.2 -5.27335 | gap 1 TAAAAAACCTATATA GCCGACATTAT AACC GTGATGT-GGC TTTTTCTTTACAGGA Cthe_2555 3025690 - 3024539 - | FkbM family methyltransferase TERM 3311 3024922 - 3024944 + g 71 -5 -4.65305 | opp_overlap 3024907 TAACAGAGGATTCTA TTATTTTGAT ATT ATCAATATAA TTCTTTATTTTTTTA Cthe_2556 3026858 - 3025845 - | radical SAM family protein Cthe_2557 3028414 - 3026915 - | glycosyl transferase family protein Cthe_2558 3029378 - 3028461 - | NAD-dependent epimerase/dehydratase TERM 3312 3029055 - 3029068 + g 73 -6.7 -4.23892 | AAACCTTTTGCAACC CAGCT CTTT AGCTG TTTTAACTGCTTCGC Cthe_2559 3029745 - 3031118 + | DegT/DnrJ/EryC1/StrS aminotransferase Cthe_2560 3031251 - 3031799 + | dTDP-4-dehydrorhamnose 3,5-epimerase Cthe_2561 3032966 - 3031827 - | CDP-glucose 4,6-dehydratase TERM 3313 3032159 - 3032176 + g 71 -6.3 -4.16681 | CATGACAGAATTTAT CCACGAT TTCT ATTGTGG TTTTGCAATCATCTT TERM 3314 3032305 - 3032323 + g 72 -4.6 -4.73613 | overlap 3032295 TACGGCCTTATTGAA TAGGGATT TCT GATCTCTA TTTTGTTCCTGCTGA TERM 3315 3032358 - 3032370 + g 74 -4.1 -5.02476 | TGCTCTTACACAATC CGGAA TAA TTCTG TTTTTTGAAAAATCT TERM 3316 3032740 - 3032750 + g 88 -4 -5.75822 | ATCTCAGGTTTGAAT GTAT CGA ATAC TTTTTTTAATTTGTC Cthe_2562 3033821 - 3033042 - | glucose-1-phosphate cytidylyltransferase Cthe_2563 3035903 - 3034122 - | hypothetical protein Cthe_2564 3036677 - 3035991 - | hypothetical protein TERM 3317 3036464 - 3036487 + g 95 -6.1 -5.60993 | CAATAGTTACATCTT CTTTTGTCG GCATTG TGACAAAAG TTTTTTTGTCCAAGC Cthe_2565 3037422 - 3036925 - | hypothetical protein Cthe_2566 3038922 - 3037597 - | radical SAM family protein TERM 3318 3038238 - 3038262 + g 73 -5.7 -4.57474 | overlap 3038234 CCCATTTTTTGTTTA GCTTTGCCAAA TCT TTTAGCAGGGC TTTTGTGTAGCTTGG Cthe_2567 3039201 - 3039007 - | hypothetical protein Cthe_2568 3040009 - 3039335 - | hypothetical protein TERM 3319 3039525 - 3039541 + g 73 -5.9 -4.54323 | TCGGGAATTGTGCCC GAAGTTG AAA CAATTTC TTTCTTATTGTCATT Cthe_2569 3040509 - 3040150 - | hypothetical protein TERM 3320 3040991 - 3040975 - H 80 -5.2 -5.13344 | ATATCAATATAAAAA TACAGT CAGTT ACTGTA AAGATTTAAAATCAA Cthe_2570 3041252 - 3043642 + | hypothetical protein Cthe_2572 3045188 - 3044568 - | hypothetical protein Cthe_2573 3045692 - 3046459 + | ABC transporter related protein TERM 3321 3047195 - 3047207 + G 83 -9.1 -4.04318 | AAGTGTTGTTATACT TGCCG CAG CGGCA TTTCTGATGTATCGG Cthe_2574 3046452 - 3047264 + | binding-protein-dependent transport systems inner membrane component TERM 3322 3047282 - 3047271 - f 71 -3 -5.20222 | AGGAAATAAACAAAA TATG TAAA CATA AAAGTGTAATATGAA Cthe_2575 3047311 - 3048321 + | hypothetical protein TERM 3323 3048342 - 3048373 + F 100 -12.4 -5.1848 | opp_overlap 3048341 3048342 TTTACGGGCAAAAAG GCGGAATTGTGTGG GAAA CCATGCAATTCTGC TTTTTTCACTTAATT TERM 3324 3049655 - 3049631 - g 74 -4.9 -4.77173 | overlap 3049632 3049633 TTTCGACAAAAGAAA TTCCCCGACCA CAT TAGCCGAGGGA CATACTTTCAGCCAC Cthe_2576 3048471 - 3049763 + | hypothetical protein Cthe_2577 3050265 - 3049795 - | adenylate cyclase Cthe_2578 3052055 - 3050535 - | Ppx/GppA phosphatase Cthe_2579 3052409 - 3053515 + | iron-containing alcohol dehydrogenase Cthe_2580 3053527 - 3054012 + | phosphodiesterase TERM 3325 3054217 - 3054177 - g 71 -6.2 -4.1822 | gap 1 GTCCATTGCAATAAA GCTTGAGAATGTAAG-CTC TTAT GAGGCAAACATACTCAAGC AGGAAATGCTGGCCA TERM 3326 3054615 - 3054628 + G 73 -9.5 -3.16564 | AGAGTCGACGAGGCC CGGGC ATCA GCCCG TTGATGCCCTGGAGG TERM 3327 3054664 - 3054651 - g 71 -5.2 -4.49556 | opp_overlap 3054651 CCTGGAGGAAATAAA CCGG GTGATA CCGG TTATAGAAAGGCTTT Cthe_2581 3054052 - 3055233 + | dihydropteroate synthase Cthe_2582 3055270 - 3055638 + | dihydroneopterin aldolase Cthe_2583 3055628 - 3056143 + | 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase Cthe_2584 3056212 - 3056838 + | hypothetical protein TERM 3328 3057314 - 3057328 + G 77 -7.8 -4.19238 | overlap 3057311 TTATCACTCTTGCTG CCGCTG TGG CAGTGG TTTTGGCATTCAAGA Cthe_2585 3056842 - 3057858 + | biotin--acetyl-CoA-carboxylase ligase Cthe_2586 3057949 - 3058737 + | amidohydrolase 2 Cthe_2587 3058831 - 3059328 + | hypothetical protein Cthe_2588 3059350 - 3060117 + | pantothenate kinase TERM 3329 3060199 - 3060145 - T 73 -8.2 -3.41569 | gap 1, opp_overlap 3060146, overlap 3060143 3060148 3060153 TCATGCATTTAAAGA CTATTGAACGCATATTCAGAAA-CA CCGGTT TGCTTTCTGGATATGCGTTCAAAAT ATATCATGATGATAT TERM 3330 3060146 - 3060198 + T 100 -13.9 -2.96692 | gap 1, opp_overlap 3060145 3060143 3060148 3060153 CATGCATTTAAAGAC TATTGAACGCATATTCAGAAA-CA CCGGTT TGCTTTCTGGATATGCGTTCAAAA TATATCATGATGATA TERM 3331 3060196 - 3060148 - T 100 -14.3 -2.86124 | gap 1, opp_overlap 3060146, overlap 3060145 3060143 3060153 TGCATTTAAAGACTA TTGAACGCATATTCAGAAA-CA CCGGTT TGCTTTCTGGATATGCGTTCAA AATATATCATGATGA TERM 3332 3060191 - 3060153 - T 70 -8.4 -3.1489 | gap 1, opp_overlap 3060146, overlap 3060148 3060145 3060143 TTAAAGACTATTGAA CGCATATTCAGAAA-CA CCGGTT TGCTTTCTGGATATGCG TTCAAAATATATCAT TERM 3333 3060215 - 3060199 - T 71 -6.7 -4.09243 | opp_overlap 3060199 3060201, overlap 3060143 3060203 GATATGCGTTCAAAA TATATCA TGA TGATATA TCATGATGCAATCTT Cthe_2589 3061561 - 3060203 - | hypothetical protein TERM 3334 3060698 - 3060722 + g 88 -11.5 -3.77087 | AAGCTCATCCGTTAT TCCCCATATTG TGT CGATGTGGGGA TTTCCGTCTTGGATG TERM 3335 3060727 - 3060737 + g 70 -3.2 -4.95896 | overlap 3060725 3060733 CGATGTGGGGATTTC CGTC TTG GATG TTTTTATCCCTTTCT TERM 3336 3062340 - 3062326 - g 73 -8.5 -3.64049 | opp_overlap 3062326 TGAAGAAGGTCGAAA CCGGC AAGGA GCCGG TGTATGACAACATTG Cthe_2590 3061974 - 3063893 + | glycoside hydrolase family protein TERM 3337 3063956 - 3063935 - f 77 -8.7 -3.71917 | opp_overlap 3063936, overlap 3063936 3063938 ACGGTAAAGCTGAAA GGATCGGGA GAAA TCCCGATCT TTTTTCATTTTTTTA TERM 3338 3063936 - 3063955 + F 100 -12.2 -5.62552 | opp_overlap 3063935 3063936 3063938 CGGTAAAGCTGAAAG GATCGGGA GAAA TCCCGATC TTTTTTCATTTTTTT TERM 3339 3063955 - 3063936 - f 90 -12.2 -2.82668 | opp_overlap 3063936, overlap 3063935 3063938 CGGTAAAGCTGAAAG GATCGGGA GAAA TCCCGATC TTTTTTCATTTTTTT TERM 3340 3063953 - 3063938 - f 73 -9 -2.9587 | opp_overlap 3063936, overlap 3063936 3063935 GTAAAGCTGAAAGGA TCGGGA GAAA TCCCGA TCTTTTTTCATTTTT TERM 3341 3064372 - 3064386 + G 75 -2.8 -5.27779 | TTCAGGCGTTGGTAT TCGGTA TAT TGTCGA TTTTTTGCTGTTCCA Cthe_2591 3064119 - 3064535 + | hypothetical protein Cthe_2592 3064586 - 3065053 + | hypothetical protein Cthe_2593 3065158 - 3066240 + | peptide chain release factor 1 Cthe_2594 3066307 - 3067047 + | zinc/iron permease Cthe_2595 3067181 - 3068236 + | translation factor SUA5 Cthe_2596 3068303 - 3068782 + | protein tyrosine phosphatase Cthe_2597 3068880 - 3069329 + | ribose-5-phosphate isomerase Cthe_2598 3069345 - 3069974 + | uracil phosphoribosyltransferase Cthe_2599 3070006 - 3070467 + | CMP/dCMP deaminase, zinc-binding TERM 3342 3070696 - 3070683 - g 76 -4.5 -5.12474 | opp_overlap 3070686 3070688 3070688 3070689 GAGAATACATAAAAA GCCTG TTGC CAGAC TTGGCGGTTTGGCCA Cthe_2600 3070549 - 3071679 + | glycosyl transferase family protein Cthe_2601 3071699 - 3072853 + | UDP-N-acetylglucosamine 2-epimerase Cthe_2602 3073152 - 3073907 + | F0F1 ATP synthase subunit A Cthe_2603 3073920 - 3074141 + | ATP synthase F0, C subunit TERM 3343 3074245 - 3074216 - g 100 -15.2 -4.61199 | ATGTGAGATATAAAA TGCTGCAAGAGA ATTTCG TCTCTTGCAGCA AAGAAAGAGAGGTGC TERM 3344 3074415 - 3074394 - g 78 -3 -5.5208 | GGAGAACAGAAAAAA TTCCATTG CAGAAT CCATGGAA AAAGCCGAAAAGGGA Cthe_2604 3074215 - 3074760 + | ATP synthase F0, B subunit TERM 3345 3075234 - 3075211 - g 79 -3.2 -5.39755 | overlap 3075212 GAGAAGTATAAAAAA CTTTACAACA AGAC TGATGTAAAA GCCAAACTTATAATT Cthe_2605 3074791 - 3075357 + | ATP synthase F1, delta subunit TERM 3346 3076297 - 3076327 + G 72 -9.6 -2.96743 | opp_overlap 3076296 3076297, overlap 3076296 3076294 GCTGCTTTTAAGAAG GCCGCCGGGAAGAG AGG CTTATCCCGGTGAC GTGTTTTATCTTCAT Cthe_2606 3075458 - 3076978 + | ATP synthase F1, alpha subunit TERM 3347 3077353 - 3077365 + G 71 -6.3 -4.20367 | opp_overlap 3077351 3077353 GTGTCTCAAACAAGA CAAAG ACC CTTTG TTGTTTGTTGCCGGA TERM 3348 3077497 - 3077513 + G 75 -5.9 -4.77759 | GGAGGTTATTCTGGA CCTTTTT GAC AAAGAGG TTTTTGATGAATTGT Cthe_2607 3077027 - 3077914 + | F0F1 ATP synthase subunit gamma Cthe_2608 3077993 - 3079387 + | F0F1 ATP synthase subunit beta TERM 3349 3079401 - 3079411 + G 79 -5.4 -4.87803 | AGGGGGGTGCTGTTT TGTC GTC GACA TTTTATTTGGAAATA Cthe_2609 3079400 - 3079807 + | ATP synthase F1, epsilon subunit TERM 3350 3079922 - 3079943 + F 79 -3.7 -5.68039 | gap 1, opp_overlap 3079922 AATAATACCAAAAAA GAAGC-CGTA TTT TCCGTGCTTC TTTTTTTATGGATTT TERM 3351 3079943 - 3079922 - f 72 -3.7 -5.31545 | gap 1, opp_overlap 3079922 AATAATACCAAAAAA GAAGC-CGTA TTT TCCGTGCTTC TTTTTTTATGGATTT TERM 3352 3080516 - 3080527 + G 71 -7.2 -3.95375 | overlap 3080514 AAAACGAAAGTGTGG CGGC AAGA GCCG TGTTTTATCTTGACT TERM 3353 3081264 - 3081240 - g 73 -7.8 -3.95435 | overlap 3081235 3081241 GCCGGTAAAACACAA CGCCGACAGC TTTAT GATGTCGGCA AAAGCCAAGGGGCAT Cthe_2610 3080278 - 3082032 + | hypothetical protein Cthe_2611 3082209 - 3087095 + | fibronectin, type III TERM 3354 3088055 - 3088073 + G 80 -4.5 -5.25803 | GGCCCAGTATATGGC CTCTGTG GACGG CACCGAG TTTTTTGTCACGCTT TERM 3355 3089875 - 3089863 - g 90 -4.8 -5.59502 | opp_overlap 3089863 TAAAAAAGGAAAAAA CCGT TAAGG ACGG TGTATGGGAAGTCAG TERM 3356 3090680 - 3090668 - g 70 -7.7 -3.7282 | TGATTTTATGAACAA GGCTT TGA AAGCC GGATTTATCACTTCC Cthe_2612 3087105 - 3090941 + | fibronectin, type III TERM 3357 3091180 - 3091160 - g 70 -5.4 -4.34766 | AAAAATGAAGACAAA GGTAAAGG TATTG CCATTACC CACTATTACCTGGTA Cthe_2613 3090992 - 3091852 + | S-layer-like domain-containing protein Cthe_2614 3092279 - 3093031 + | hypothetical protein TERM 3358 3094026 - 3093989 - g 71 -4.2 -4.99035 | gap 2 CTATTGATATAAAAA CGCATCCATATCC--CGG TTTT CCGACGGATATGCAGGCG CAGATGACTTCTTTG TERM 3359 3094067 - 3094081 + G 73 -5.7 -4.56775 | CGGAAGGAACCAGCA TGGTC ATTGA GACCA TTTTTGAAAACAGAT TERM 3360 3094214 - 3094228 + G 73 -7 -4.17048 | GGGCAACGGACCTCA GAGCCG GTG CGGCCC TTGTTTTGGCAGGCC Cthe_2615 3093097 - 3094365 + | UDP-N-acetylglucosamine 1-carboxyvinyltransferase TERM 3361 3094477 - 3094445 - f 100 -14.3 -3.05228 | opp_overlap 3094445 3094450, overlap 3094434 3094450 AAAATGAAGTACATA TTAAAGGACGCAAGG ATT CCCTTCGTCCTTTAA TTATTTGTAACTCAT TERM 3362 3094445 - 3094477 + F 100 -13 -4.09519 | gap 1, opp_overlap 3094445 3094434 3094450, overlap 3094450 AAAATGAAGTACATA TTAAAGGACGCAAGG ATTC CCTT-CGTCCTTTAA TTATTTGTAACTCAT TERM 3363 3094450 - 3094472 + F 87 -8.5 -4.18044 | gap 1, opp_overlap 3094445 3094434 3094450, overlap 3094445 GAAGTACATATTAAA GGACGCAAGG ATTC CCTT-CGTCC TTTAATTATTTGTAA TERM 3364 3094472 - 3094450 - f 83 -9.8 -3.91027 | opp_overlap 3094450 3094445, overlap 3094445 3094434 GAAGTACATATTAAA GGACGCAAGG ATT CCCTTCGTCC TTTAATTATTTGTAA Cthe_2616 3094656 - 3095660 + | SpoIID/LytB domain-containing protein Cthe_2617 3095742 - 3096662 + | peptidase M23B TERM 3365 3096737 - 3096692 - f 100 -17.9 -4.16681 | opp_overlap 3096693 3096699, overlap 3096693 3096699 AAGAGTATTTGAAAA GTTAAAAGCCGGTGAAGCTTA ATAT TAAGCTTTACCGGCTTTTAAT ACTTTCTAATGTCCA TERM 3366 3096693 - 3096736 + F 100 -23.6 -3.0558 | opp_overlap 3096692 3096693 3096699, overlap 3096699 AGAGTATTTGAAAAG TTAAAAGCCGGTGAAGCTTA ATAT TAAGCTTTACCGGCTTTTAA TACTTTCTAATGTCC TERM 3367 3096736 - 3096693 - f 100 -21.4 -3.09286 | opp_overlap 3096693 3096699, overlap 3096692 3096699 AGAGTATTTGAAAAG TTAAAAGCCGGTGAAGCTTA ATAT TAAGCTTTACCGGCTTTTAA TACTTTCTAATGTCC TERM 3368 3096699 - 3096730 + F 100 -18.2 -4.40993 | opp_overlap 3096693 3096692 3096699, overlap 3096693 TTTGAAAAGTTAAAA GCCGGTGAAGCTTA ATAT TAAGCTTTACCGGC TTTTAATACTTTCTA TERM 3369 3096730 - 3096699 - f 100 -16 -4.4267 | opp_overlap 3096699 3096693, overlap 3096693 3096692 TTTGAAAAGTTAAAA GCCGGTGAAGCTTA ATAT TAAGCTTTACCGGC TTTTAATACTTTCTA TERM 3370 3097185 - 3097147 - g 77 -9.5 -3.55815 | opp_overlap 3097153, overlap 3097148 AAAGACTTCTGCAAA TCAATTCCGCCCTGGCC GAGCA GGCAAAGGCGGTATTGG ACAAAAATAAAGCGG TERM 3371 3097184 - 3097148 - g 90 -13 -2.73007 | opp_overlap 3097153, overlap 3097147 AAGACTTCTGCAAAT CAATTCCGCCCTGGCC GAGCA GGCAAAGGCGGTATTG GACAAAAATAAAGCG Cthe_2618 3097005 - 3097268 + | stage III sporulation protein D, SpoIIID TERM 3372 3097290 - 3097315 + F 90 -9.1 -4.67353 | opp_overlap 3097291 3097296, overlap 3097291 3097296 ATTGCCAAACAAAAC ATAAAAGTCGG GAAA CCGACTTTTAA TTTTTGGATAAATAC TERM 3373 3097314 - 3097291 - f 100 -12.6 -4.05678 | opp_overlap 3097291 3097290 3097296, overlap 3097296 TTGCCAAACAAAACA TAAAAGTCGG GAAA CCGACTTTTA ATTTTTGGATAAATA TERM 3374 3097291 - 3097314 + F 91 -12.6 -3.3993 | opp_overlap 3097291 3097296, overlap 3097290 3097296 TTGCCAAACAAAACA TAAAAGTCGG GAAA CCGACTTTTA ATTTTTGGATAAATA TERM 3375 3097296 - 3097309 + F 90 -8.1 -4.78661 | opp_overlap 3097291 3097296, overlap 3097291 3097290 AAACAAAACATAAAA GTCGG GAAA CCGAC TTTTAATTTTTGGAT TERM 3376 3097309 - 3097296 - f 91 -8.1 -5.00136 | opp_overlap 3097296 3097291 3097290, overlap 3097291 AAACAAAACATAAAA GTCGG GAAA CCGAC TTTTAATTTTTGGAT Cthe_2619 3097438 - 3098472 + | rod shape-determining protein MreB TERM 3377 3098538 - 3098558 + F 100 -13.3 -5.80727 | TTTAAAGGCAACTTG GGCCGGATT TTC AGTCCGGCC TTTTTTGTTGTTTTT Cthe_2620 3098687 - 3099466 + | protein of unknown function DUF1078-like protein TERM 3378 3099759 - 3099776 + G 75 -5.5 -4.78107 | overlap 3099757 AATCCTCTTGATCTT GCCATAG ACGG CGATGGC TTTTTCATGGTGCTC Cthe_2621 3099480 - 3100280 + | protein of unknown function DUF1078-like protein TERM 3379 3100456 - 3100438 - g 76 -3.2 -5.252 | overlap 3100439 GATTTTGAGAAAAAA CTTCAAAA CGC TCTTGAAA ACAAGGATGAAAAAG Cthe_2622 3100348 - 3100698 + | hypothetical protein Cthe_2623 3100750 - 3101898 + | exopolysaccharide biosynthesis protein Cthe_2625 3103245 - 3103685 + | 3-hydroxyacyl-[acyl-carrier-protein] dehydratase TERM 3380 3103712 - 3103749 + T 84 -5.5 -5.34381 | opp_overlap 3103712 3103724 GTTTAATATAAAAAA GTCCGAGAAAAACACGA GGCA TCGTGAAATTATCGGAC TTTTTATTTGGCTTT TERM 3381 3103749 - 3103712 - T 84 -5.5 -5.47159 | opp_overlap 3103712, overlap 3103724 GTTTAATATAAAAAA GTCCGAGAAAAACACGA GGCA TCGTGAAATTATCGGAC TTTTTATTTGGCTTT TERM 3382 3103737 - 3103724 - T 83 -6.7 -4.86033 | opp_overlap 3103712, overlap 3103712 AAAGTCCGAGAAAAA CACGA GGCA TCGTG AAATTATCGGACTTT murC 3105197 - 3103788 - | UDP-N-acetylmuramate--L-alanine ligase TERM 3383 3106233 - 3106219 - g 73 -8.5 -3.75169 | opp_overlap 3106230 GACGATTTCATGAAA GGCGG AGGTA CCGCC AAAGGCATAATTGAT Cthe_2627 3105595 - 3106413 + | purine operon repressor TERM 3384 3106422 - 3106436 + F 79 -3.6 -5.64274 | overlap 3106414 3106424 GCTGTAGGAAAAACT TTCATT TTA AATGGA TTTTTTTATGCATGA Cthe_2628 3106611 - 3106895 + | hypothetical protein TERM 3385 3107283 - 3107309 + F 83 -10.4 -3.14522 | opp_overlap 3107277 ATGAAGTAATTGCAG GATTTCTTTATA AAC TGTAAAGAAATC TTCAATATGCATTGA TERM 3386 3108136 - 3108126 - g 70 -3.2 -4.86133 | GAGACATATGAAAAA CGGT GTG ACCA TAATTGACCCTGATT Cthe_2629 3107356 - 3108759 + | UDP-N-acetylglucosamine pyrophosphorylase / glucosamine-1-phosphate N-acetyltransferase Cthe_2630 3108818 - 3109780 + | ribose-phosphate pyrophosphokinase TERM 3387 3109940 - 3109996 + F 93 -8.4 -5.13473 | gap 1, opp_overlap 3109948 3109955, overlap 3109951 3109955 TATTGTTAATTAATA TTACAAAATACTAAATTGCCTCCTTAA AAAA TTAGGGAGGCAATTTGTTAG-TTGTGA TTTTTTAGGTATCAT TERM 3388 3109989 - 3109948 - f 90 -8.9 -4.55625 | opp_overlap 3109940 3109951 3109955, overlap 3109955 ATTAATATTACAAAA TACTAAATTGCCTCCTTAA AAAA TTAGGGAGGCAATTTGTTA GTTGTGATTTTTTAG TERM 3389 3109951 - 3109986 + F 100 -15 -3.54717 | opp_overlap 3109948 3109955, overlap 3109940 3109955 AATATTACAAAATAC TAAATTGCCTCCTTAA AAAA TTAGGGAGGCAATTTG TTAGTTGTGATTTTT TERM 3390 3109955 - 3109982 + F 100 -13.6 -4.37199 | opp_overlap 3109948 3109955, overlap 3109951 3109940 TTACAAAATACTAAA TTGCCTCCTTAA AAAA TTAGGGAGGCAA TTTGTTAGTTGTGAT TERM 3391 3109982 - 3109955 - f 100 -11.4 -4.10958 | opp_overlap 3109955 3109951 3109940, overlap 3109948 TTACAAAATACTAAA TTGCCTCCTTAA AAAA TTAGGGAGGCAA TTTGTTAGTTGTGAT Cthe_2631 3110023 - 3110613 + | peptidyl-tRNA hydrolase TERM 3392 3111752 - 3111741 - g 72 -4.4 -4.6902 | opp_overlap 3111741, overlap 3111743 GGATAAGGTGAAAAA GTGT AAAA ACAC ACTGTATTTTACCAC Cthe_2632 3110641 - 3114177 + | transcription-repair coupling factor TERM 3393 3114263 - 3114249 - f 72 -5.8 -4.36774 | opp_overlap 3114254, overlap 3114254 AACCAACAAGAGAAA TCAATT TTC AATTGA AACTGTTATGCTATT TERM 3394 3115066 - 3115053 - g 82 -3.8 -5.46657 | GATGCCAAGAAAAAA GCGT ATGAGA ACGC AAAGAAAGCTCTTGA Cthe_2633 3114345 - 3115439 + | hypothetical protein TERM 3395 3115514 - 3115480 - f 72 -2.8 -5.46706 | opp_overlap 3115480 ACGGCAAAATAAAAA GGGGTTGTTTCAGGAT AAA AACTTGAAATAACTCC TTTTTTATTTGGTAT TERM 3396 3115480 - 3115514 + F 100 -9.4 -5.69793 | opp_overlap 3115480 ACGGCAAAATAAAAA GGGGTTGTTTCAGGAT AAA AACTTGAAATAACTCC TTTTTTATTTGGTAT Cthe_2634 3115776 - 3116390 + | AraC family transcriptional regulator Cthe_2635 3116500 - 3116934 + | pyridoxamine 5'-phosphate oxidase-related, FMN-binding Cthe_2636 3118775 - 3117237 - | integral membrane protein MviN Cthe_2637 3119835 - 3118798 - | glycosyl transferase, group 1 TERM 3397 3119638 - 3119626 - G 74 -9.1 -3.57119 | opp_overlap 3119626 CAGATATGCGGTAAA TGCCG CTG CGGCA TTGTGGCCGTGTATA TERM 3398 3119626 - 3119638 + g 72 -9.1 -3.32819 | opp_overlap 3119626 CAGATATGCGGTAAA TGCCG CTG CGGCA TTGTGGCCGTGTATA Cthe_2638 3121159 - 3119873 - | O-antigen polymerase TERM 3399 3120165 - 3120151 - G 75 -2.8 -5.19879 | TGGCAAACATAAAAA GATAGA GAA TCAATC CTGTAACTCCCATTT Cthe_2639 3121896 - 3121204 - | N-acylneuraminate cytidylyltransferase Cthe_2640 3123068 - 3121893 - | UDP-N-acetylglucosamine 2-epimerase Cthe_2641 3124057 - 3123065 - | N-acetylneuraminate synthase TERM 3400 3123659 - 3123669 + g 81 -5.4 -5.10461 | AATAACGGGCTTGTT TAGC TTT GCTA TTTTTATTAAATAAG TERM 3401 3123975 - 3123991 + g 86 -4.3 -5.41746 | overlap 3123976 TCAGCACCTGCATCT TTGGCGG CAT CCACCAG TTTTTTTGCAAGCTT Cthe_2642 3124698 - 3124054 - | hexapaptide repeat-containing transferase Cthe_2643 3125737 - 3124691 - | nucleotidyl transferase TERM 3402 3125185 - 3125210 + g 85 -5.5 -5.25772 | AATAGTTTTTTTCAA TATCGTTAAAG TATG CTTTTACGGTA TTTTTCTTGTGGTTT Cthe_2644 3126911 - 3125742 - | DegT/DnrJ/EryC1/StrS aminotransferase Cthe_2645 3127907 - 3126927 - | NAD-dependent epimerase/dehydratase Cthe_2646 3129145 - 3127922 - | hypothetical protein TERM 3403 3128080 - 3128108 + g 72 -9.5 -3.02263 | opp_overlap 3128089, overlap 3128086 3128107 ATTCTTCGGTATTTT TGACAGGAAGGGC GCA GCCCAGCTTGTCA TATTCCACCGGATGT TERM 3404 3128783 - 3128772 - G 72 -3.6 -5.03314 | TTTATGGGGAAAAAA CAGC TTCT GCCG CGCTCTCTGAAAAGT Cthe_2647 3130068 - 3129142 - | hypothetical protein Cthe_2648 3130693 - 3130085 - | sugar transferase Cthe_2649 3131532 - 3130705 - | HpcH/HpaI aldolase TERM 3405 3130990 - 3131004 + g 84 -2.1 -5.70761 | GGCAATGCCTCCAAA TCCGT AGGGA ATGGA TTTTTGTTTTATTTT TERM 3406 3131198 - 3131181 - G 73 -6.9 -4.2558 | GAGTTTCCACCAAAA GCATGGC TTTT GCCCTGC CGTTGACATGACCAA Cthe_2650 3133571 - 3131748 - | polysaccharide biosynthesis protein CapD TERM 3407 3133624 - 3133610 - H 86 -4.2 -5.72616 | AGCTACATAAAAAAA CGGCTA ATA TATCCG GCTTGTATTTCTGCG Cthe_2651 3133879 - 3134211 + | hypothetical protein TERM 3408 3134237 - 3134255 + F 83 -8.2 -4.27584 | TTAAAGCTCAAGCCG CATTTTGC TCC GCAGAATG TTTTAACTTGCGGCT TERM 3409 3134585 - 3134568 - g 77 -9.9 -3.45945 | opp_overlap 3134568 GTGACTTATAATGAA CTGCTGA AAAA TCAGCAG TTGGTAAAAGATTAC TERM 3410 3134568 - 3134585 + G 73 -9.9 -3.15579 | opp_overlap 3134568 GTGACTTATAATGAA CTGCTGA AAAA TCAGCAG TTGGTAAAAGATTAC Cthe_2652 3134379 - 3135047 + | lipopolysaccharide biosynthesis Cthe_2653 3135060 - 3135809 + | hypothetical protein Cthe_2654 3135802 - 3136512 + | PHP-like protein Cthe_2655 3136848 - 3137399 + | AbrB family transcriptional regulator TERM 3411 3137477 - 3137506 + F 85 -6.6 -5.11937 | gap 1, opp_overlap 3137477 TTACATTCTTAAAAA TAACAGGTAA-CC GTTGA GGATTGCCTGTTA TTTTTTAAGGTTATT TERM 3412 3137506 - 3137477 - f 74 -5.8 -4.61231 | opp_overlap 3137477 TTACATTCTTAAAAA TAACAGGTAACC GTTGAG GATTGCCTGTTA TTTTTTAAGGTTATT Cthe_2656 3137630 - 3138415 + | MazG family protein Cthe_2657 3138566 - 3138841 + | nucleoid protein Hbs TERM 3413 3138881 - 3138899 + F 83 -6 -5.28942 | opp_overlap 3138880 3138881 AAACTGATGCAAAAG GGCTTC CAGAGGT GAAGCC TTTTTATTTGACCTC Cthe_2658 3138951 - 3139190 + | RNA-binding S4 TERM 3414 3139212 - 3139244 + F 95 -8.7 -5.23765 | opp_overlap 3139211, overlap 3139219 AAGAAAGCAATAAGG TAAAAAAGGCATT GAAGAAA GATGCCTTTTTTA TTTTTGTCTTGTTTA TERM 3415 3139219 - 3139237 + F 82 -2.4 -5.98675 | opp_overlap 3139211, overlap 3139212 CAATAAGGTAAAAAA GGCATT GAAGAAA GATGCC TTTTTTATTTTTGTC Cthe_2659 3139355 - 3139645 + | YabP-like protein Cthe_2660 3139660 - 3140169 + | hypothetical protein Cthe_2661 3140295 - 3140576 + | septum formation initiator TERM 3416 3140567 - 3140584 + F 77 -8.5 -3.69338 | overlap 3140570 GGTTTTTGTGGATGT GAATCAG TAGT CTGATTC TTCTTACCCTTCATT TERM 3417 3141082 - 3141069 - g 74 -3.9 -5.08601 | CGACCTCAAGAAAAA TTTTG AATC CAAAA GGGGCGGCGGAGGAT Cthe_2662 3140695 - 3141117 + | RNA binding S1 TERM 3418 3141265 - 3141236 - f 71 -6.6 -3.97088 | opp_overlap 3141236 GTGCATAATATTAAA GGGACTTTTATT GATGTG AATAAAAGTCTC TTTTTGAATGTATTA TERM 3419 3141236 - 3141265 + F 93 -8.8 -4.74453 | opp_overlap 3141236 GTGCATAATATTAAA GGGACTTTTATT GATGTG AATAAAAGTCTC TTTTTGAATGTATTA TERM 3420 3141625 - 3141601 - f 72 -9.3 -2.62078 | opp_overlap 3141602, overlap 3141600 3141598 GCAACCAGACAACAG TCCTGTAAGCA CAA CGCTTACAGGT TTTTTTATGCAATAA TERM 3421 3141602 - 3141624 + F 100 -12.1 -5.626 | opp_overlap 3141601 3141600 3141598 CAACCAGACAACAGT CCTGTAAGC ACAAC GCTTACAGG TTTTTTTATGCAATA Cthe_2663 3141839 - 3143095 + | methyl-accepting chemotaxis sensory transducer Cthe_2664 3143384 - 3145105 + | 2-octaprenylphenol hydroxylase Cthe_2665 3145510 - 3145106 - | Zn-finger containing protein TERM 3422 3145540 - 3145581 + r 79 -6.7 -4.56367 | gap 1, opp_overlap 3145543 3145546 3145549, overlap 3145543 3145549 ATCTGTTCAAAGTTT AAATAACAATGGA-GGGGCA ATG TGCCCCGTCCATTATTATGC TTTCTTTATCAAATA TERM 3423 3145578 - 3145543 - R 100 -15 -3.71649 | gap 1, opp_overlap 3145540 3145543 3145549, overlap 3145546 3145549 TGTTCAAAGTTTAAA TAACAATGGA-GGGGCA ATG TGCCCCGTCCATTATTA TGCTTTCTTTATCAA TERM 3424 3145543 - 3145578 + r 100 -12.8 -3.22499 | gap 1, opp_overlap 3145543 3145546 3145549, overlap 3145540 3145549 TGTTCAAAGTTTAAA TAACAATGGA-GGGGCA ATG TGCCCCGTCCATTATTA TGCTTTCTTTATCAA TERM 3425 3145575 - 3145546 - R 100 -12.3 -3.98804 | gap 1, opp_overlap 3145543 3145540 3145549, overlap 3145543 3145549 TCAAAGTTTAAATAA CAATGGA-GGGGCA ATG TGCCCCGTCCATTA TTATGCTTTCTTTAT TERM 3426 3145549 - 3145572 + r 100 -11.8 -3.95727 | gap 1, opp_overlap 3145546 3145543 3145549, overlap 3145543 3145540 AAGTTTAAATAACAA TGGA-GGGGCA ATG TGCCCCGTCCA TTATTATGCTTTCTT TERM 3427 3145572 - 3145549 - R 100 -11.8 -4.1023 | gap 1, opp_overlap 3145549 3145543 3145540, overlap 3145546 3145543 AAGTTTAAATAACAA TGGA-GGGGCA ATG TGCCCCGTCCA TTATTATGCTTTCTT Cthe_2666 3148170 - 3145576 - | ATPase, P-type (transporting), HAD superfamily, subfamily IC TERM 3428 3146362 - 3146379 + g 81 -5.5 -5.10497 | overlap 3146355 3146363 GCCGTCTCCCGTCAT TGCGGTA ATCT TGCCGCG TTTTTTCCATGCATT TERM 3429 3146494 - 3146520 + g 80 -11.6 -2.79133 | TTCAGATAGTTCCGC TCCGGTGATAGC CTG GCTTTCATCGGA TATAATGCCCAGTTC Cthe_2667 3148454 - 3149011 + | TetR family transcriptional regulator TERM 3430 3149084 - 3149052 - f 76 -7.3 -4.18197 | opp_overlap 3149047 3149052 ATGTTTTATGTAAAA TTATCTACCATTATT ACA AATAATGATATATAA TTATAATGTTATGTA Cthe_2668 3149215 - 3149586 + | hypothetical protein Cthe_2669 3149656 - 3150309 + | hypothetical protein Cthe_2670 3150379 - 3151113 + | hypothetical protein TERM 3431 3151488 - 3151469 - T 83 -8 -4.26188 | opp_overlap 3151472, overlap 3151486 TTTATAGATTCAAAA GAATTTCT GATA AGAAATTC TTACAAAAGAAAAAT TERM 3432 3151532 - 3151573 + T 73 -8.2 -3.49777 | opp_overlap 3151528 3151533 3151535, overlap 3151537 TGCGTATAAAATATT ACAGGGGGGTTCA-GGAAAC CAGA GTTTCCCTGAACCCCT-TGA TTATACTATATACGC TERM 3433 3151572 - 3151533 - T 83 -10.8 -2.98387 | gap 1, opp_overlap 3151532 3151537, overlap 3151528 3151535 GCGTATAAAATATTA CAGGGGGGTTCAGGAAACC AGA GTTTCCCTGAACCCCT-TG ATTATACTATATACG TERM 3434 3151571 - 3151535 - T 81 -10.1 -3.03972 | opp_overlap 3151532 3151537, overlap 3151533 3151528 GTATAAAATATTACA GGGGGGTTCAGGAAACC AGA GTTTCCCTGAACCCCTT GATTATACTATATAC TERM 3435 3151537 - 3151569 + T 100 -15.8 -3.49182 | gap 1, opp_overlap 3151535 3151533 3151528, overlap 3151532 ATAAAATATTACAGG GGGGTTCA-GGAAAC CAGA GTTTCCCTGAACCCC TTGATTATACTATAT Cthe_2671 3152802 - 3151579 - | transposase, mutator type TERM 3436 3152313 - 3152301 - G 73 -7.7 -3.90586 | opp_overlap 3152301 3152300 ATACTATCGGATAAA CCTCT CCC AGAGG CCTTTTCTGCCACTC Cthe_2672 3154125 - 3152905 - | transposase, mutator type TERM 3437 3153387 - 3153362 - G 74 -6.1 -4.37092 | overlap 3153363 ACGTTTCTCATAAAA TGTACACGGCA TCTT TGCCATGCACT TCCCGTTAAAATCTT TERM 3438 3153386 - 3153363 - G 73 -9.6 -3.21934 | overlap 3153362 CGTTTCTCATAAAAT GTACACGGCA TCTT TGCCATGCAC TTCCCGTTAAAATCT Cthe_2673 3154340 - 3154624 + | hypothetical protein Cthe_2674 3154851 - 3155273 + | hypothetical protein TERM 3439 3155582 - 3155596 + G 78 -4.2 -5.27779 | opp_overlap 3155565 TATGAGTCACCCAGA CAGGTA CTT TTCCTG TTTTTTGCTGTTGGA Cthe_2675 3155528 - 3156196 + | hypothetical protein TERM 3440 3156429 - 3156419 - g 100 -6.8 -5.58454 | TTCAGATGAAAAAAA CAGC AAT GCTG AAAACAATCGCAGCG TERM 3441 3157240 - 3157224 - g 70 -5.9 -4.3586 | GTACGCAGATGAAAA CACTCTT GAG AAGAATG TGCCTGAAGAGCTTT Cthe_2676 3156409 - 3157839 + | GumN TERM 3442 3157940 - 3157965 + F 100 -14.1 -5.95449 | opp_overlap 3157937 AATATAAACTTATGA GCGGCAGGTTT TAAA AAACTTGCCGC TTTTTTATTTTCTTT TERM 3443 3158649 - 3158662 + G 82 -3.8 -5.40072 | opp_overlap 3158647, overlap 3158647 ATGATATGAAAGAGT CGGT GTTCCA ACCG TTTTTTTACCAGCGG Cthe_2677 3158087 - 3158806 + | histidine kinase TERM 3444 3159074 - 3159042 - T 100 -10 -5.00196 | gap 1, opp_overlap 3159049, overlap 3159049 TTTGAAAGAAGAAAA GAGAAAAGAGGCTCG TGAT CGAGCCTCTTT-CTA TTCTATAATGAAACA TERM 3445 3159068 - 3159049 - T 100 -13.6 -4.98103 | opp_overlap 3159049, overlap 3159042 GAAGAAAAGAGAAAA GAGGCTCG TGAT CGAGCCTC TTTCTATTCTATAAT TERM 3446 3159049 - 3159068 + T 100 -13.6 -4.31766 | opp_overlap 3159049 3159042 GAAGAAAAGAGAAAA GAGGCTCG TGAT CGAGCCTC TTTCTATTCTATAAT Cthe_2678 3159647 - 3159114 - | hypothetical protein Cthe_2679 3160737 - 3159652 - | tetratricopeptide TPR_2 TERM 3447 3160927 - 3160914 - R 75 -8.1 -3.65046 | CTGTGATTTCAATAA CCAGG CTTA CCTGG CAGCCTGGCGCTTTA Cthe_2680 3163157 - 3160920 - | peptidase S41 TERM 3448 3162209 - 3162181 - G 78 -11.1 -3.02144 | opp_overlap 3162180 GCATCCTCGGCAATA GCCAGAAATTCAT CGC ACGATTTTCTGGC CTCTTCAATGTCTCC TERM 3449 3163762 - 3163797 + H 100 -13.4 -2.70788 | opp_overlap 3163768, overlap 3163768 GCCCTATAGTGCCCA CCAGAACGGTTGTACG TTAT CGTACAGCCGTTTTTG CCTTTTTATGCATCA TERM 3450 3163768 - 3163791 + H 100 -13.2 -4.93595 | opp_overlap 3163768, overlap 3163762 TAGTGCCCACCAGAA CGGTTGTACG TTAT CGTACAGCCG TTTTTGCCTTTTTAT TERM 3451 3163791 - 3163768 - H 87 -11 -3.4072 | opp_overlap 3163762 3163768 TAGTGCCCACCAGAA CGGTTGTACG TTAT CGTACAGCCG TTTTTGCCTTTTTAT TERM 3452 3165164 - 3165148 - g 73 -7.9 -3.95836 | AGCTTCAAAAGACAA GCCCGCT TAC AGCCGGC GTATAAAGGAACTTA Cthe_2681 3164153 - 3166549 + | serine phosphatase Cthe_2682 3166623 - 3166964 + | hypothetical protein TERM 3453 3167259 - 3167273 + G 74 -6.4 -4.34482 | GGTTTTGCCCTTGGT GCCGAA TTG TTTGGC TATTTTTTTGGAAAG TERM 3454 3167471 - 3167497 + G 100 -9.4 -5.48063 | overlap 3167462 AGTGTATGTGGCTTC GCATTTTCCGGT GAT GCCGGTGAATGC TTTTTTCTATTGGCT Cthe_2683 3167127 - 3167744 + | hypothetical protein Cthe_2684 3168090 - 3168605 + | hypothetical protein TERM 3455 3168797 - 3168787 - f 75 -2.6 -5.61689 | AAAACCAAGAAAAAA TAAT AGG ATTA AAGTTGGATACAAAA TERM 3456 3168817 - 3168835 + F 85 -2.4 -6.10489 | opp_overlap 3168818, overlap 3168818 TGGATACAAAATTAA TTGAAGAT TAA AGCTTCAG TTTTTTTTTGCACTT Cthe_2685 3168929 - 3169897 + | nifR3 family TIM-barrel protein TERM 3457 3170176 - 3170152 - g 72 -4.3 -4.72986 | overlap 3170135 GATTTTTATTAAAAA TTTCGGTATAG CTT CTACTCCAAAA GGGTCTATCAAAAAC Cthe_2686 3170039 - 3171142 + | type IV pilus assembly protein PilM TERM 3458 3171177 - 3171193 + F 95 -8.7 -5.23316 | opp_overlap 3171177 3171176 TAGTGATTGGCAAAG CGGCATT TTA GATGCCG TTTTTTGATGTAATC TERM 3459 3171315 - 3171276 - g 80 -7.8 -4.38171 | overlap 3171278 CACATCAGAGGAAAA CAGGGAAAACTTTGTGGG TAAG CCCCCAAGACTTTCCCAG GTGGAAATGACTGAG TERM 3460 3171313 - 3171278 - g 76 -9 -3.78877 | overlap 3171276 CATCAGAGGAAAACA GGGAAAACTTTGTGGG TAAG CCCCCAAGACTTTCCC AGGTGGAAATGACTG Cthe_2687 3171253 - 3171756 + | thioesterase superfamily protein TERM 3461 3173257 - 3173243 - g 81 -7 -4.78839 | AATTGGATAATAAAA CCCGGC CTT GCGGGG GCAATAATGCTTGTT Cthe_2688 3171893 - 3173446 + | polysaccharide biosynthesis protein TERM 3462 3173461 - 3173478 + T 81 -9.1 -3.83771 | opp_overlap 3173450 3173461 AAAGCAGTGAAAGCA CGGTTCC GCAA GGGACCG TTTCATAACTTTCTT TERM 3463 3174052 - 3174032 - T 79 -7 -4.72617 | TTAGAAAAGAACAAA CTGATTAA TTATT TTAATCAG AAACATGACGTAAAC Cthe_2689 3175747 - 3174251 - | GntR family transcriptional regulator Cthe_2690 3176029 - 3176934 + | phosphoribose diphosphate:decaprenyl-phosphate phosphoribosyltransferase Cthe_2691 3176948 - 3177484 + | galactoside O-acetyltransferase Cthe_2692 3177533 - 3178636 + | glycosyl transferase, group 1 TERM 3464 3178994 - 3178982 - g 72 -9.1 -3.34715 | opp_overlap 3178981 3178980, overlap 3178980 TATCTTTTGTAAAGA CTGCC GAC GGCAG AGTTGTCGCAAGTTC Cthe_2693 3178684 - 3179181 + | hypothetical protein TERM 3465 3179380 - 3179391 + G 73 -5.8 -4.56597 | opp_overlap 3179379 3179387 ATGTTGTATAACAGT GCCA TAAT TGGC TTTTTCACAAGAAAA TERM 3466 3179462 - 3179482 + G 82 -8.3 -4.14615 | overlap 3179463 GGATAATAAACGGTT GCTTTGAGG TTC CCTCAAAGA TTTTAAAGGGTTTTT TERM 3467 3179463 - 3179481 + G 82 -11.8 -3.07685 | overlap 3179462 GATAATAAACGGTTG CTTTGAGG TTC CCTCAAAG ATTTTAAAGGGTTTT TERM 3468 3180231 - 3180250 + G 70 -9.4 -2.73875 | overlap 3180228 AACGTTTTTGCTCAA TAAAAGGC TTTT GCCTTTTA TAATATTGGGCGGGG Cthe_2694 3179188 - 3180786 + | O-antigen polymerase TERM 3469 3181515 - 3181504 - g 73 -5.8 -4.62302 | opp_overlap 3181502 3181504 GAAGAGCTTCAAAAA CTGG ATAA CCAG TATTTTAACAAAACT Cthe_2695 3180901 - 3181533 + | hypothetical protein TERM 3470 3181761 - 3181785 + G 83 -9.4 -3.96148 | gap 1 GGAAACAATGGAGGG GATGCCTTTGC AATT GCAA-GGCATC TTTGTAATAAAGGGG Cthe_2696 3181575 - 3183122 + | carbohydrate kinase, YjeF related protein alr 3183182 - 3184357 + | alanine racemase Cthe_2698 3184869 - 3185045 + | CopG family transcriptional regulator Cthe_2699 3185146 - 3185496 + | transcriptional modulator of MazE/toxin, MazF TERM 3471 3185710 - 3185699 - g 76 -4.4 -5.12707 | GGAAATGGCAAAAAA GCTT GAAG AAGC CGAAAAAAGGCTTGA Cthe_2700 3185517 - 3186014 + | hypothetical protein TERM 3472 3186110 - 3186085 - T 79 -6.9 -4.55118 | gap 1, opp_overlap 3186088, overlap 3186088 TAAGTTGAGATAAAA TAAGGAGGC-GT TTT ACAGCCTCCTTT TGTTTTTGTCATAAT TERM 3473 3186088 - 3186107 + T 100 -8.6 -5.3658 | gap 1, opp_overlap 3186085 3186088 GTTGAGATAAAATAA GGAGGC-GT TTT ACAGCCTCC TTTTGTTTTTGTCAT TERM 3474 3186107 - 3186088 - T 88 -8.6 -4.38141 | gap 1, opp_overlap 3186088, overlap 3186085 GTTGAGATAAAATAA GGAGGC-GT TTT ACAGCCTCC TTTTGTTTTTGTCAT TERM 3475 3186289 - 3186307 + T 93 -9.6 -4.70169 | TAAAATCAAGCTCTT TCAGGCTT TTC AGGCCTGA TTTTGTTGGCTATGA Cthe_2701 3187028 - 3186279 - | N-acetylmannosaminyltransferase Cthe_2702 3189296 - 3187059 - | polysaccharide pyruvyl transferase TERM 3476 3187409 - 3187419 + g 74 -4 -5.0925 | GTTTATTGGTTATTA CAAA GCT TTTG TTTTTCATTTTCGAA TERM 3477 3187676 - 3187666 - G 77 -8.2 -4.15565 | opp_overlap 3187659 3187645 GGTATTATGGTAAAA GCCG GGT CGGC AGTTACCTTAATCCT TERM 3478 3188108 - 3188118 + g 73 -5.4 -4.57569 | CCATAAGCATGGCGT CATC TCC GATG TTTTTAAAGCCGTAA TERM 3479 3188409 - 3188423 + g 71 -4.2 -5.00616 | AATGCCTCCCACATT GCTGCT TAT AGTGGC TTTTTTCAGCAGAGA TERM 3480 3188530 - 3188512 - G 72 -3.2 -5.08169 | ATAGAGTTTAAAAAA TCGTAA GGTTTGT TTACGA AACCTAAAAAGAAAA TERM 3481 3188558 - 3188574 + g 86 -4.3 -5.40474 | opp_overlap 3188560, overlap 3188560 AAACGTTGTTCTGAA GACCGTA GGA TGCGGCC TTTTTTTCGAGGGAT TERM 3482 3189216 - 3189247 + g 72 -4.4 -4.72272 | TACATTTATATGTTT GCCAAGTTCCCT GACCAGAG AGAGAACATGGC TTTTTGCTCCGCCAA TERM 3483 3190452 - 3190442 - g 88 -4 -5.78622 | CGATGGTAAAAAAAA TTGT TCG ACAA ATTGACAAAAAAGCT Cthe_2703 3189622 - 3190527 + | hypothetical protein Cthe_2704 3190643 - 3191488 + | transketolase subunit A TERM 3484 3191625 - 3191599 - g 74 -6 -4.47271 | CAAAGTCAACGAAAA CGGAATATTT CAAAAAT AAATATCCCG AAAGGTTTTTCAATA Cthe_2705 3191490 - 3192425 + | transketolase subunit B TERM 3485 3192456 - 3192485 + F 100 -10.7 -5.18355 | overlap 3192458 AACAGTTGAAAATAC TGCCCGGGTGTGA TTTA TTGCACCCGGGTG TTTTTGATTTTTAAG TERM 3486 3192458 - 3192483 + F 100 -13.3 -4.20007 | overlap 3192456 CAGTTGAAAATACTG CCCGGGTGTGA TTTA TTGCACCCGGG TGTTTTTGATTTTTA TERM 3487 3192584 - 3192572 - f 82 -6.3 -5.05301 | overlap 3192583 AAAGAAGGATAAAAA GCTAT ATA ATAGC CACGTCGGCGCAATT TERM 3488 3192835 - 3192813 - g 84 -7.8 -4.80455 | GATTGAAATACAAAA TTTGACCAAA AGA TATGGTCAAA TAGTAGCCGTTGACA TERM 3489 3193201 - 3193191 - g 70 -5.4 -4.31835 | overlap 3193178 AAGGCTTATAAGAAA CCTT TCA AAGG GTTACAAGCAGAGGG Cthe_2706 3192796 - 3193905 + | ABC transporter related protein Cthe_2707 3193905 - 3194627 + | ABC-type transport system involved in multi-copper enzyme maturation, permease component TERM 3490 3195298 - 3195285 - g 72 -4.5 -4.77759 | ACAAGGCAGGAAAAA GTGCC CGAA GACAC CACTGTATTGTTTTT Cthe_2708 3194634 - 3196055 + | hypothetical protein TERM 3491 3197258 - 3197237 - g 70 -5.9 -4.36931 | opp_overlap 3197237 GAAGGCATATCAAAA TTGAGGAAT TTTT ATTCCACAA TTATAGGCATTACAG Cthe_2709 3196052 - 3197530 + | hypothetical protein TERM 3492 3197553 - 3197602 + F 100 -13.4 -5.71712 | gap 2, opp_overlap 3197553 TGGTAATTTGAAAAA CAACTCC-TA-CATAGAATTATTC TAGA GAATGATTCTATGGTAAGGAGTTG TTTTTTTGTCTCAGG TERM 3493 3197602 - 3197553 - f 100 -11.2 -4.66833 | gap 2, opp_overlap 3197553 TGGTAATTTGAAAAA CAACTCC-TA-CATAGAATTATTC TAGA GAATGATTCTATGGTAAGGAGTTG TTTTTTTGTCTCAGG TERM 3494 3198652 - 3198674 + G 79 -5.6 -4.86731 | opp_overlap 3198645 3198642 3198658, overlap 3198653 CTAAACATGCTTGTT TCAAAGCTTG CGG CAAGTTTTGC TTTTGTTTCCAGCAA TERM 3495 3198653 - 3198673 + G 74 -9.1 -3.51557 | opp_overlap 3198645 3198642 3198658, overlap 3198652 TAAACATGCTTGTTT CAAAGCTTG CGG CAAGTTTTG CTTTTGTTTCCAGCA Cthe_2710 3197608 - 3198717 + | hypothetical protein TERM 3496 3199825 - 3199846 + G 76 -6.7 -4.4727 | opp_overlap 3199829, overlap 3199829 ATGATTTTATAGCCA TAAACACAT CCAA GTGTGTTTA TTTTATAGATGTTGC Cthe_2711 3198798 - 3199979 + | hypothetical protein TERM 3497 3200218 - 3200201 - g 70 -9.9 -2.6627 | opp_overlap 3200200 3200199, overlap 3200200 GGAATTTACCATAAT CTCATGC TTCG GCATGAG GCTTTAAGTCTTCCG Cthe_2712 3199997 - 3200716 + | hypothetical protein TERM 3498 3200899 - 3200864 - f 82 -7.6 -4.73617 | opp_overlap 3200872, overlap 3200867 3200869 3200872 AAAATAAATAATAAA CAAGACAATAGCCGGG CAAA CCCGGCTATTATTATA ATAAATTGGAAATCA TERM 3499 3200896 - 3200867 - f 100 -11.5 -4.39859 | opp_overlap 3200872, overlap 3200864 3200869 3200872 ATAAATAATAAACAA GACAATAGCCGGG CAAA CCCGGCTATTATT ATAATAAATTGGAAA TERM 3500 3200894 - 3200869 - f 100 -14.1 -3.76887 | opp_overlap 3200872, overlap 3200867 3200864 3200872 AAATAATAAACAAGA CAATAGCCGGG CAAA CCCGGCTATTA TTATAATAAATTGGA TERM 3501 3200891 - 3200872 - f 100 -13.6 -3.96154 | opp_overlap 3200872, overlap 3200869 3200867 3200864 TAATAAACAAGACAA TAGCCGGG CAAA CCCGGCTA TTATTATAATAAATT TERM 3502 3200872 - 3200891 + F 100 -13.6 -3.85522 | opp_overlap 3200872 3200869 3200867 3200864 TAATAAACAAGACAA TAGCCGGG CAAA CCCGGCTA TTATTATAATAAATT TERM 3503 3201178 - 3201192 + G 75 -10 -3.19192 | opp_overlap 3201176 CAGGTATCAGAATGG CAGGAG GTA CTCCTG TTGAGTTCGGTGCAA TERM 3504 3201593 - 3201603 + G 71 -6.8 -4.11692 | CAACTCCATGAACTG CCTC ACT GAGG TTTTGGGAATGGGTC Cthe_2713 3200988 - 3202652 + | dihydroxy-acid dehydratase Cthe_2714 3202721 - 3204388 + | acetolactate synthase, large subunit Cthe_2715 3205766 - 3204696 - | integrase catalytic subunit TERM 3505 3205107 - 3205117 + g 74 -4.6 -4.90013 | opp_overlap 3205107 CAAAAGAAACAATAA CTCG TAG CGGG TTTTTCGTTCAGTTA Cthe_2716 3205863 - 3206975 + | integrase catalytic subunit rpmG 3207218 - 3207367 + | 50S ribosomal protein L33 Cthe_2718 3207456 - 3207698 + | preprotein translocase, SecE subunit Cthe_2719 3207754 - 3208287 + | transcription antitermination protein nusG Cthe_2720 3208429 - 3208854 + | 50S ribosomal protein L11P Cthe_2721 3208955 - 3209650 + | 50S ribosomal protein L1P TERM 3506 3209821 - 3209848 + F 70 -4.1 -5.011 | overlap 3209806 GGATAATGACAATTA CCCCTTTATGT CTATGT GCATTGAGGGG TTTTATTATTTCAGT Cthe_2722 3209923 - 3210459 + | 50S ribosomal protein L10P Cthe_2723 3210547 - 3210936 + | 50S ribosomal protein L12P TERM 3507 3210958 - 3211010 + F 100 -25.4 -3.07962 | opp_overlap 3210965 3210974, overlap 3210961 3210974 ATAGGTGACGTTGAT TGACAGATAGCAAAAAGGTTCCTT GAGGG AAGGAGCCTTTTTGCTATCTGTTA TATTAAGATATAAAC TERM 3508 3210961 - 3211007 + F 100 -24.9 -3.68325 | opp_overlap 3210965 3210974, overlap 3210958 3210974 GGTGACGTTGATTGA CAGATAGCAAAAAGGTTCCTT GAGGG AAGGAGCCTTTTTGCTATCTG TTATATTAAGATATA TERM 3509 3211003 - 3210965 - f 100 -16.3 -2.91383 | opp_overlap 3210961 3210958 3210974, overlap 3210974 ACGTTGATTGACAGA TAGCAAAAAGGTTCCTT GAGGG AAGGAGCCTTTTTGCTA TCTGTTATATTAAGA TERM 3510 3210994 - 3210974 - f 74 -5.4 -4.86133 | opp_overlap 3210961 3210958 3210974, overlap 3210965 GACAGATAGCAAAAA GGTTCCTT GAGGG AAGGAGCC TTTTTGCTATCTGTT TERM 3511 3210974 - 3210994 + F 87 -7.6 -4.87037 | opp_overlap 3210974 3210965, overlap 3210961 3210958 GACAGATAGCAAAAA GGTTCCTT GAGGG AAGGAGCC TTTTTGCTATCTGTT TERM 3512 3212819 - 3212807 - g 70 -7.7 -3.65135 | opp_overlap 3212805 3212807, overlap 3212801 3212798 GGGAAAGAATGACAA TCCAG GAC CTGGA TGTTGTCACTCCACA TERM 3513 3212968 - 3212951 - g 76 -6.9 -4.33182 | opp_overlap 3212960 TTACGCATAAAAGAA GGCTCAG TGCG CTGGGCC CCGGAGGTTTGAGCA rpoB 3211435 - 3215187 + | DNA-directed RNA polymerase subunit beta TERM 3514 3216126 - 3216112 - g 88 -11.4 -3.4691 | ACGGAAGAAGAGGAA GACCGG TAA CCGGTC CCGGAAACAGACCGT Cthe_2725 3215205 - 3218702 + | DNA-directed RNA polymerase subunit beta' Cthe_2726 3218844 - 3219083 + | 50S ribosomal protein L7AE rpsL 3219171 - 3219599 + | 30S ribosomal protein S12 TERM 3515 3219952 - 3219939 - g 79 -5.2 -5.1101 | TCATCAGGGAAAAAA CGGG AAAAGA CCCG TTGGAAGTGTTTGAA Cthe_2728 3219779 - 3220249 + | 30S ribosomal protein S7 Cthe_2729 3220322 - 3222415 + | translation elongation factor 2 (EF-2/EF-G) TERM 3516 3222510 - 3222495 - f 93 -6.2 -5.67967 | ATTATTATAAAAAAA TCAGTT GGTG AACTGA AAAAAGGAGGAGAAT Cthe_2730 3222531 - 3223733 + | elongation factor Tu TERM 3517 3223752 - 3223788 + F 100 -13.9 -4.22949 | opp_overlap 3223752 3223757, overlap 3223760 TTTTAGTGTTATATA TCAAATGGGCCGGAGTA CAA TACTCCGGCTTATTTAA TTTATGTGTCTTATA TERM 3518 3223788 - 3223752 - f 88 -11.7 -2.88544 | opp_overlap 3223752 3223760, overlap 3223757 TTTTAGTGTTATATA TCAAATGGGCCGGAGTA CAA TACTCCGGCTTATTTAA TTTATGTGTCTTATA TERM 3519 3223783 - 3223757 - f 83 -9.4 -3.88498 | opp_overlap 3223752 3223760, overlap 3223752 GTGTTATATATCAAA TGGGCCGGAGTA CAA TACTCCGGCTTA TTTAATTTATGTGTC TERM 3520 3223760 - 3223780 + F 100 -15.5 -4.1958 | opp_overlap 3223757 3223752, overlap 3223752 TTATATATCAAATGG GCCGGAGTA CAA TACTCCGGC TTATTTAATTTATGT Cthe_2731 3224039 - 3224593 + | ECF subfamily RNA polymerase sigma-24 factor TERM 3521 3224816 - 3224798 - g 86 -4.7 -5.52384 | TGGTTATGAAAAAAA TAAATGT TCTTG ACATTTA TCATAAAAAACAGCG Cthe_2732 3224590 - 3225192 + | hypothetical protein TERM 3522 3225225 - 3225201 - f 81 -9.3 -3.79505 | opp_overlap 3225201, overlap 3225189 AAATTAACAGTGAAA CGAAGCCCTTC TAT GAAAGGCTTTG TTTTTTTGTTTATGT TERM 3523 3225201 - 3225225 + F 100 -9.3 -6.04953 | opp_overlap 3225201 3225189 AAATTAACAGTGAAA CGAAGCCCTTC TAT GAAAGGCTTTG TTTTTTTGTTTATGT TERM 3524 3225364 - 3225353 - g 100 -4.4 -5.95946 | TGAAGAAGAAAAAAA TGAC CGCG GTCA GGGAGAAGAAGCAGA Cthe_2733 3225303 - 3225677 + | hypothetical protein TERM 3525 3226291 - 3226276 - g 76 -3.2 -5.20333 | CACCGATAATAAAAA GAACGG AGAG CGGTTC CATTAAAGGATACGG Cthe_2734 3225714 - 3226553 + | VanW TERM 3526 3226923 - 3226900 - g 86 -7.5 -5.0916 | CTGGGAATAGAAAAA GGCAGTAAA ATTGTG CTTACTGCC GAAGGTGAGGATGAA Cthe_2735 3226729 - 3226998 + | HPrNtr domain-containing protein TERM 3527 3227461 - 3227433 - g 70 -8.9 -3.15427 | opp_overlap 3227435 AAGACTTGTCAGGAA CATTTCTGTCAGC GTG GCCGACGAAAATG GCTTGAAAATCAATG TERM 3528 3228568 - 3228548 - g 71 -7.5 -3.85698 | GCGTTTGCGGAGAAA TGGCAACGG ATC CCATGGCCA TAGTAGTGCTTTTGG Cthe_2736 3227050 - 3228756 + | phosphoenolpyruvate--protein phosphotransferase uvrC 3228762 - 3230639 + | excinuclease ABC subunit C TERM 3529 3231170 - 3231190 + G 74 -6 -4.3898 | overlap 3231171 CTATCCACCTTTTAA TCCGGCGG GTGAG CCGGCGGG TTTTGTGGAAATAAT Cthe_2738 3230646 - 3231353 + | metallophosphoesterase TERM 3530 3231673 - 3231661 - g 71 -4.9 -4.57073 | GAGGCGGTGCAAAAA TCTTA TCT TAAGA ATTCCAAGAAATTTA TERM 3531 3232403 - 3232392 - g 72 -4.4 -4.7871 | AAGCATCAGGAAAAA GCTT ACGG AAGC TGCCGAACACAGGGC Cthe_2739 3231571 - 3232857 + | trigger factor Cthe_2740 3232927 - 3233511 + | ATP-dependent Clp protease proteolytic subunit ClpP TERM 3532 3234516 - 3234502 - g 71 -5 -4.62783 | GACCGAGCCGAAAAA TGCTCT TGT AAAGCA GTACCAGAAGCTTTT clpX 3233525 - 3234820 + | ATP-dependent protease ATP-binding subunit Cthe_2742 3235055 - 3236731 + | endopeptidase La TERM 3533 3237819 - 3237803 - g 79 -8.7 -4.08216 | CGAGCTTGTGGAAAA GGCCAAA GGA CTTGGCC TGGAAGTATTTTATC TERM 3534 3237857 - 3237839 - g 73 -8.8 -3.6608 | AGTATTTTATCCAAA GCCGGTAC TTT GCACCGAC AACGCTGCAATGATA Cthe_2743 3236943 - 3237962 + | O-sialoglycoprotein endopeptidase TERM 3535 3237960 - 3238004 + T 83 -6.7 -4.87665 | gap 1, opp_overlap 3237967, overlap 3237964 3237967 AAGTTGGGTGAGAGG TAAAAAAGCTGTGGA-TAAC TTTTTT GTTAATCCACAGCTGATTTA TTTTTGTGCATGCCG TERM 3536 3237967 - 3237997 + T 77 -9.2 -3.34078 | gap 1, opp_overlap 3237967, overlap 3237964 3237960 GTGAGAGGTAAAAAA GCTGTGGA-TAAC TTTTTT GTTAATCCACAGC TGATTTATTTTTGTG TERM 3537 3237997 - 3237967 - T 95 -9.2 -5.1287 | gap 1, opp_overlap 3237967 3237964 3237960 GTGAGAGGTAAAAAA GCTGTGGA-TAAC TTTTTT GTTAATCCACAGC TGATTTATTTTTGTG TERM 3538 3238688 - 3238660 - T 100 -14 -5.48825 | GAGGATGTAAAAAAA TTCGGGCGGATA TGTTT TATCCACCCGAA TACAAAGTGTAGTAT Cthe_2744 3239362 - 3238676 - | lytic transglycosylase, catalytic Cthe_2745 3239902 - 3239579 - | hypothetical protein Cthe_2746 3240238 - 3240708 + | hypothetical protein Cthe_2747 3240768 - 3241616 + | PHP-like protein TERM 3539 3241728 - 3241745 + F 82 -7.7 -4.53475 | overlap 3241724 ATATTTTTATATATG CCCTTTC TCTG GGAAGGG TTATTTTTATCGGAT smpB 3241796 - 3242260 + | SsrA-binding protein TERM 3540 3243110 - 3243092 - f 81 -4.5 -5.40072 | opp_overlap 3243094, overlap 3243094 TTCTTCCTAAAAAAA CACCTCC GCTTT GGAGGTT GTTCAATGTTTTTTG TERM 3541 3243094 - 3243108 + F 74 -7.8 -3.78168 | opp_overlap 3243092 3243094 CTTCCTAAAAAAACA CCTCCG CTT TGGAGG TTGTTCAATGTTTTT TERM 3542 3243108 - 3243094 - f 76 -7.1 -4.34482 | opp_overlap 3243094, overlap 3243092 CTTCCTAAAAAAACA CCTCC GCTTT GGAGG TTGTTCAATGTTTTT TERM 3543 3243656 - 3243640 - f 82 -5.1 -5.45802 | GGTGTAAAATAAAAA TGCAGCA AGT TGCCACA TAAAAGTACAACAGT TERM 3544 3243809 - 3243798 - f 71 -2.2 -5.43553 | ATGGAAAAAACAAAA TAGC CATT GCCA GCACCCCATAAAAAT TERM 3545 3244814 - 3244768 - g 93 -7.4 -5.36965 | overlap 3244769 GAAGAGGACAAAAAA GCGATGCGGGATATTCCAAA AGCTGAA TATGAAATATACCGCATCGA AAAGTTAAAGTCGGA TERM 3546 3244813 - 3244769 - g 86 -10.9 -3.80552 | overlap 3244768 AAGAGGACAAAAAAG CGATGCGGGATATTCCAAA AGCTGAA TATGAAATATACCGCATCG AAAAGTTAAAGTCGG Cthe_2749 3243871 - 3245376 + | hypothetical protein TERM 3547 3245662 - 3245648 - g 76 -3.6 -5.28176 | TTCATTGATAAAAAA GAAAAT CTA ATTCTC TACGGTCCTGTTGGA Cthe_2750 3245369 - 3246094 + | IstB-like ATP-binding protein Cthe_2751 3246518 - 3246922 + | hypothetical protein TERM 3548 3248995 - 3248959 - g 72 -3.1 -5.08824 | gap 1, opp_overlap 3248973 3248989, overlap 3248961 3248963 GTCCGATGCAAAAAA CAGAGGATATACACCT TGCAGC AGGTGTA-ATCCGCCA AGATAGGAGGATAAT Cthe_2752 3247670 - 3249001 + | beta-lactamase-like protein Cthe_2753 3249012 - 3249224 + | hypothetical protein Cthe_2754 3249319 - 3250035 + | beta-lactamase-like protein TERM 3549 3250392 - 3250411 + G 71 -6.4 -4.30978 | GGCTCGGCAATGAGG GTAAGCCC GATA GGGTTTGC TTTTGATACATTGGA Cthe_2755 3250074 - 3250895 + | ADP-ribosylation/crystallin J1 Cthe_2756 3251428 - 3251168 - | transposase Cthe_2757 3251706 - 3253322 + | potassium/proton antiporter Cthe_2758 3253452 - 3253580 + | hypothetical protein TERM 3550 3254374 - 3254354 - g 70 -9 -3.14683 | ATATCGGTGTAGCAA CTACCGGT AATGA ACCGGCAG GATATGATGTATTGA Cthe_2759 3253726 - 3254604 + | AraC family transcriptional regulator TERM 3551 3254631 - 3254596 - f 81 -4.2 -5.63517 | opp_overlap 3254602 3254628 3254629 CCGGTAAAGAAAAAA GACTATTAATCACA TCTGTGTT TATGATTATTAGTC ACTCTCCGTTAGAGA TERM 3552 3254628 - 3254652 + F 93 -6.4 -5.65177 | opp_overlap 3254596, overlap 3254629 GTGTTTATGATTATT AGTCACTCTC CGTTA GAGAGTGGCC TTTTTTTATAAATAT TERM 3553 3254629 - 3254651 + F 90 -9.9 -3.9748 | opp_overlap 3254596, overlap 3254628 TGTTTATGATTATTA GTCACTCTC CGTTA GAGAGTGGC CTTTTTTTATAAATA TERM 3554 3255916 - 3255896 - g 77 -6.1 -4.62302 | GAATACGCTGAAAAA TGCCTTACC GTT GCCAAGGCA CTGTATGATTTTGCA Cthe_2760 3255101 - 3257986 + | glycoside hydrolase family protein TERM 3555 3258017 - 3258069 + F 89 -11.7 -3.16608 | gap 1, opp_overlap 3258029 3258031, overlap 3258019 3258029 GAGGAGTGGATATAT TTG-TTCAGGCAATATTATGAACC CAATAA GGTTCATAATATTGCTTGAAACTG TTAAATAATTTGGCT TERM 3556 3258019 - 3258067 + F 100 -16.5 -3.14053 | gap 1, opp_overlap 3258029 3258031, overlap 3258017 3258029 GGAGTGGATATATTT G-TTCAGGCAATATTATGAACC CAATAA GGTTCATAATATTGCTTGAAAC TGTTAAATAATTTGG TERM 3557 3258056 - 3258029 - f 84 -10.8 -3.05596 | opp_overlap 3258019 3258017 3258029, overlap 3258031 TATTTGTTCAGGCAA TATTATGAACCC AATA AGGTTCATAATA TTGCTTGAAACTGTT TERM 3558 3258029 - 3258056 + F 82 -10.1 -3.35639 | opp_overlap 3258029 3258031, overlap 3258019 3258017 TATTTGTTCAGGCAA TATTATGAACC CAATAA GGTTCATAATA TTGCTTGAAACTGTT TERM 3559 3258054 - 3258031 - f 74 -9 -3.08679 | opp_overlap 3258029 3258019 3258017, overlap 3258029 TTTGTTCAGGCAATA TTATGAACCC AATA AGGTTCATAA TATTGCTTGAAACTG TERM 3560 3258092 - 3258106 + F 74 -2.9 -5.48825 | opp_overlap 3258092 ATTTGGCTTTCGAAA GAATA ACGTA TATTC TTTTTTTACATGCTA TERM 3561 3258224 - 3258211 - g 77 -8.1 -4.24123 | GGAATAATTCCAAAA TCGGC TCTG GCCGA AGAGCCAAAATTTAA TERM 3562 3258338 - 3258322 - g 77 -6.5 -4.57533 | opp_overlap 3258322 AACAACAGGATAAAA TGGCGTG GTC CATGCCA TATTGAGGACGGCAA Cthe_2761 3258151 - 3260274 + | glycoside hydrolase family protein Cthe_2762 3260724 - 3262061 + | transcriptional regulator-like protein Cthe_2763 3262045 - 3263097 + | hypothetical protein TERM 3563 3263101 - 3263128 + F 82 -6.4 -5.10968 | opp_overlap 3263101 TACAATATATAAAAA GTTTGCAATGTT AATT AAAGTTGCAAAC TTTTTGTCTGTTAAT TERM 3564 3263128 - 3263101 - f 70 -4.2 -5.12474 | opp_overlap 3263101 TACAATATATAAAAA GTTTGCAATGTT AATT AAAGTTGCAAAC TTTTTGTCTGTTAAT TERM 3565 3264815 - 3264795 - g 73 -10.5 -2.91276 | overlap 3264794 CCGGTCGTGATAAAC CCAAAACCT GCC AGGCTTTGG TTGAAAGATATAAGA Cthe_2764 3263552 - 3265015 + | TROVE domain-containing protein TERM 3566 3266559 - 3266549 - g 79 -5.4 -4.99134 | ATGTCAAATTAAAAA GTGT TAT ACAC GACGACGCATTAAAA Cthe_2765 3265027 - 3266607 + | hypothetical protein Cthe_2766 3266614 - 3266859 + | hypothetical protein Cthe_2767 3266985 - 3268382 + | methyltransferase type 12 Cthe_2768 3268379 - 3270991 + | metallophosphoesterase Cthe_2769 3271862 - 3271107 - | protein of unknown function DUF542, ScdA-like protein TERM 3567 3272655 - 3272631 - g 75 -10.1 -3.10098 | opp_overlap 3272635, overlap 3272628 3272635 AGGAGCTTAAAACTA CCAATATCCCC GAC GAGGATATTGA ATGTCTGCGAAGCCT TERM 3568 3273044 - 3273025 - g 71 -5 -4.64334 | AACCTTGGAAGAAAA CCTTGAGA AAGT CCTCAAAG CCATTCGTTCATTGA Cthe_2770 3272258 - 3273547 + | transposase IS116/IS110/IS902 Cthe_2771 3274866 - 3273730 - | beta-lactamase-like protein Cthe_2772 3274895 - 3275188 + | transposase IS3/IS911 Cthe_2773 3275211 - 3276047 + | integrase catalytic subunit TERM 3569 3276067 - 3276053 - T 86 -11.4 -2.82742 | overlap 3276050 AGTTGTGTAGAATTA TGGGGC TCC GCCCCA AACCCCGTCCTCACC TERM 3570 3276114 - 3276091 - T 82 -11 -2.53876 | opp_overlap 3276081 CCTCACCGGAAGGCA GCCGGTCTGT CATA ACAGACCGGA AAGCAAAAGGATATA TERM 3571 3276185 - 3276138 - T 70 -7.1 -3.60234 | gap 1 GGATATATGTCCAAA GGATGTCAAGGGTCAAGATGAA CTCGC TTACGCTCG-CCCTTGACATCC TCCAACAGAGTGCAC Cthe_2774 3276415 - 3276236 - | hypothetical protein TERM 3572 3276556 - 3276529 - R 100 -6.4 -6.08342 | gap 1, opp_overlap 3276528 3276529 GAACAAATAAAAAAA CCAAGCGTTAAAT TCC ATTTC-CGCTTGG CTTTCATGCTAGAGA Cthe_2775 3277263 - 3276565 - | Crp/FNR family transcriptional regulator Cthe_2776 3277477 - 3278124 + | hypothetical protein Cthe_2777 3279005 - 3279709 + | nicotinamide mononucleotide transporter PnuC Cthe_2778 3279702 - 3280724 + | cytidyltransferase-like protein TERM 3573 3280991 - 3280975 - g 89 -5.9 -5.36689 | opp_overlap 3280975 AAACCAAAAATAAAA GCAATAA TAT TTACTGC ATTAATTATTGTGAT Cthe_2779 3280825 - 3281211 + | hypothetical protein Cthe_2780 3281662 - 3282003 + | hypothetical protein TERM 3574 3282505 - 3282516 + G 76 -2.2 -5.40072 | ACCAGTGACGACACT TGCT GGGA AGCG TTTTTTTCAAGCGAA TERM 3575 3282742 - 3282720 - g 100 -12.2 -5.4477 | AAATTTTGAAAAAAA TATCGTAATC AAA GATTACGATA CCACTAAATATAAAG Cthe_2781 3282115 - 3282801 + | hypothetical protein TERM 3576 3283679 - 3283668 - g 83 -7.2 -4.74013 | TTTAAAGACATAAAA GGCC ACTG GGCC GAAGACCTGATAGTC Cthe_2782 3283059 - 3283817 + | N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD TERM 3577 3283851 - 3283872 + F 72 -3.6 -5.26119 | opp_overlap 3283851, overlap 3283846 AAGTAATTTTGAAAA GCCCGTTG TAATTT TATCGGGC TTTTATTTTTAAACA Cthe_2783 3284105 - 3284266 + | hypothetical protein TERM 3578 3284607 - 3284597 - g 73 -5.4 -4.55093 | CCATATAAGAATAAA CAAC AAA GTTG GGAAACACAGGGTTG Cthe_2784 3284334 - 3284999 + | cobalamin B12-binding protein Cthe_2785 3284989 - 3286107 + | MtaA/CmuA family methyltransferase Cthe_2786 3286144 - 3287211 + | methylcobalamin:coenzyme M methyltransferase Cthe_2787 3287171 - 3288847 + | ferredoxin Cthe_2788 3288861 - 3289517 + | hypothetical protein TERM 3579 3290297 - 3290284 - g 71 -5.3 -4.5852 | TAATGTAAAGGAAAA CAAAG AAGA CTTTG TAAGGTTTATGGCAG Cthe_2789 3289547 - 3290629 + | NLPA lipoprotein Cthe_2790 3290645 - 3291451 + | ABC transporter related protein TERM 3580 3291916 - 3291895 - g 73 -5.9 -4.63218 | TTGGCTGGAAGAAAA GGCTTTACA AGGC TGTAAATCC ACTCACAAAAGTGTT TERM 3581 3292323 - 3292336 + G 74 -5.3 -4.78848 | TTCATAGGAGTTGTT GTAAC GGGT GTTAC TTTTCTGTTTGACAA Cthe_2791 3291477 - 3292385 + | binding-protein-dependent transport systems inner membrane component TERM 3582 3293025 - 3293010 - g 83 -6.1 -5.07107 | overlap 3293021 GAAACTGCGAAAAAA CAGGG AATTGA CCCTG CAAAGGACCTTTCCA Cthe_2792 3292404 - 3293726 + | phenylacetate--CoA ligase TERM 3583 3293878 - 3293868 - g 85 -5.4 -5.26875 | TGTTGAATTAAAAAA TGCT TTA AGCA GAGTGGCATCCGGAA Cthe_2793 3293731 - 3294903 + | aminotransferase Cthe_2794 3294900 - 3295445 + | pyruvate ferredoxin oxidoreductase, gamma subunit TERM 3584 3295505 - 3295522 + G 70 -9.1 -3.17146 | overlap 3295502 GATTATCCTGTGGGT CCCTGCT ATAC GGCAGGG TATCTTGTAACCGAA Cthe_2795 3295442 - 3295753 + | pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit Cthe_2796 3295743 - 3296930 + | pyruvate ferredoxin oxidoreductase, alpha subunit Cthe_2797 3296923 - 3297828 + | thiamine pyrophosphate enzyme-like TPP-binding TERM 3585 3298091 - 3298079 - f 74 -6.3 -4.36366 | overlap 3298081 TATAAAATATACAAA TGCAA TCT TTGCA AAGTTTGTGAAGAAA Cthe_2798 3298248 - 3298628 + | endoribonuclease L-PSP TERM 3586 3298900 - 3298924 + G 77 -5 -5.00616 | overlap 3298898 3298895 3298902 TTTTCCAGCGGCATG GCGGCAGTAT CCACC ATACTGTCTC TTTTTTCACCCAAAG Cthe_2799 3298648 - 3299808 + | cystathionine gamma-synthase TERM 3587 3300744 - 3300718 - g 77 -6 -4.64676 | opp_overlap 3300724, overlap 3300724 GTATCTTGAAGAAAA TCTAAATACTCT GGA AGAGTATTTTAA GAACAATATCCCTCA TERM 3588 3300738 - 3300724 - g 73 -7.2 -3.99986 | opp_overlap 3300724, overlap 3300718 TGAAGAAAATCTAAA TACTCT GGA AGAGTA TTTTAAGAACAATAT TERM 3589 3300724 - 3300738 + G 73 -7.2 -4.08394 | opp_overlap 3300724 3300718 TGAAGAAAATCTAAA TACTCT GGA AGAGTA TTTTAAGAACAATAT Cthe_2800 3299819 - 3301000 + | aminotransferase, class I and II TERM 3590 3301219 - 3301207 - g 74 -9.1 -3.44622 | opp_overlap 3301197 CATTTTCATAACGAA GGTGG GCA CCACC ATCATCAGGATTCCT TERM 3591 3301289 - 3301274 - g 71 -4 -4.91285 | overlap 3301269 ATGAATACAAGAAAA GCTTTC CGTC AAAAGC AAATGTTATAGAGAA Cthe_2801 3301150 - 3303162 + | carbon-monoxide dehydrogenase, catalytic subunit TERM 3592 3303513 - 3303497 - g 71 -6.5 -4.30978 | opp_overlap 3303498, overlap 3303498 TTGAATTCAGGAAAA GTGGACG GTG CGTCCAT GCTTATAGAACTTGC TERM 3593 3303512 - 3303498 - g 75 -10 -3.18105 | opp_overlap 3303498, overlap 3303497 TGAATTCAGGAAAAG TGGACG GTG CGTCCA TGCTTATAGAACTTG TERM 3594 3303498 - 3303512 + G 73 -10 -2.83747 | opp_overlap 3303498 3303497 TGAATTCAGGAAAAG TGGACG GTG CGTCCA TGCTTATAGAACTTG Cthe_2802 3303221 - 3304204 + | NLPA lipoprotein Cthe_2803 3304204 - 3304983 + | binding-protein-dependent transport systems inner membrane component TERM 3595 3305093 - 3305078 - g 76 -3.2 -5.19879 | CTGGAAATAGAAAAA GGCGAA TTTA TTTGCC TCCTGGGACCCAGCG Cthe_2804 3304985 - 3305755 + | ABC transporter related protein TERM 3596 3305846 - 3305800 - T 87 -12 -2.53903 | gap 2, opp_overlap 3305811, overlap 3305811 TTTCTTAAAAAGGAT TTTTCAAAAAAGCACCGGAAGC TTATT GCT-CCGGTGC-TTTTTAAAAA TGTAAATATTTGAGT TERM 3597 3305836 - 3305811 - T 100 -11.2 -5.02074 | gap 1, opp_overlap 3305811, overlap 3305800 GGATTTTTCAAAAAA GCACCGGAAGC TTATT GCT-CCGGTGC TTTTTAAAAATGTAA TERM 3598 3305811 - 3305836 + T 100 -11.2 -4.61231 | gap 1, opp_overlap 3305811 3305800 GGATTTTTCAAAAAA GCACCGGAAGC TTATT GCT-CCGGTGC TTTTTAAAAATGTAA Cthe_2805 3307266 - 3305884 - | carbohydrate-binding, CenC-like protein TERM 3599 3306074 - 3306084 + g 76 -6.8 -4.45696 | opp_overlap 3306073 3306074 ATGGTTTTAAGGAAG GGCT CCC AGCC TATTTTTTCTTTAGC Cthe_2806 3308017 - 3307313 - | hypothetical protein TERM 3600 3307586 - 3307570 - G 76 -10.9 -2.52464 | opp_overlap 3307573 3307573, overlap 3307548 3307573 CGGGGTCGGAACTTA CAACGGT CCA ACCGTTG GCTCCGTTTTCGAAA Cthe_2807 3308398 - 3309429 + | glycoside hydrolase family protein TERM 3601 3309688 - 3309700 + G 79 -10.5 -3.53811 | opp_overlap 3309678 ATTATGTTCCGATAG CGCCG GCA CGGCG TTTGGCCGGGATAGA TERM 3602 3310195 - 3310182 - g 76 -2.4 -5.42131 | GAAGGATACAAAAAA GCAT TGGAAG ATGC AGGATTAGGTTTTGA Cthe_2808 3309546 - 3310583 + | LacI family transcription regulator TERM 3603 3311877 - 3311859 - g 70 -9.6 -2.58892 | overlap 3311863 3311867 ACTTATATCAACTGA GGAAGAAC CCG GTCCTTCC GACGCACCCGGTGCG TERM 3604 3313934 - 3313920 - g 70 -8.6 -3.44051 | GTTGTATCAGGATAA TGTTCC GCT GGAACA AGGGCAAACCTACGA Cthe_2809 3310693 - 3314658 + | glycoside hydrolase family protein TERM 3605 3314710 - 3314742 + F 100 -7.1 -6.11243 | opp_overlap 3314710 GTTGAGTTTTTAAAA GGCATTATATTGGTT GTA AAACTGTATAATGCC TTTTTTTTATTGGGT TERM 3606 3315131 - 3315119 - g 76 -9.1 -3.75169 | TATCATGGGAGCAAA CGTCG GTA CGACG GTTACAGCATGGATT Cthe_2810 3314844 - 3316598 + | Na/Pi-cotransporter II-related protein TERM 3607 3317764 - 3317751 - g 71 -3.7 -4.93365 | TGGTACAAGGAAAAA GGCGG TATA CCGAC GGTTTGCTGGCACTG TERM 3608 3318385 - 3318371 - g 73 -8.6 -3.72757 | opp_overlap 3318370, overlap 3318366 GACAAGCGAACAGAA CAATCC TGT GGATTG GCTTGTTGAAATGTA Cthe_2811 3316953 - 3318728 + | glycoside hydrolase family protein TERM 3609 3318757 - 3318778 + F 100 -10.1 -4.79955 | CGACTTGTGATTTGG GCCGGTGTC TTAA GATGCCGGC TTTTGTTATAAATAT TERM 3610 3319122 - 3319107 - g 83 -4.8 -5.32882 | TATGATGAGAAAAAA TCTTTT TGCA AAAAGA GCGGTGGCTTTCCTG TERM 3611 3319548 - 3319522 - g 73 -8.6 -3.79043 | TACTATGAATTTAAA GACCAGTTCCGT GCA ACGGGACAGGCC GTCCATGCTGAAGTA Cthe_2812 3319096 - 3320931 + | glycoside hydrolase family protein TERM 3612 3321003 - 3321033 + F 81 -9 -3.85909 | opp_overlap 3321008, overlap 3321008 CTGTTGTGTTAAAAA TGAAACGGGTGGCT TTT GGCTGCCCGTTTTG TTTACATTTAACTGC TERM 3613 3321008 - 3321028 + F 95 -8.9 -4.96468 | opp_overlap 3321008, overlap 3321003 GTGTTAAAAATGAAA CGGGTGGCT TTT GGCTGCCCG TTTTGTTTACATTTA Cthe_2813 3321225 - 3321920 + | two component transcriptional regulator TERM 3614 3321978 - 3321991 + GT 83 -3.1 -5.55664 | overlap 3321979 GCTGAGTTTTGTGTG TGCTT CTGA AAGCG TTTTTTTCGTGGTGA Cthe_2814 3321895 - 3323934 + | periplasmic sensor signal transduction histidine kinase TERM 3615 3323985 - 3324018 + T 100 -14.1 -3.78168 | opp_overlap 3323985, overlap 3323977 3324017 CCAATATCAAAAAAA TCCTTGAAACACTTT GCGT ACAGTGTTTCAAGGA TTCTTAAATCTTTTT TERM 3616 3324018 - 3323985 - T 100 -14.1 -5.63374 | opp_overlap 3323985 3323977 3324017 CCAATATCAAAAAAA TCCTTGAAACACTTT GCGT ACAGTGTTTCAAGGA TTCTTAAATCTTTTT TERM 3617 3324017 - 3324028 + T 71 -3 -5.1925 | opp_overlap 3323985, overlap 3323985 3323977 GTACAGTGTTTCAAG GATT CTTA AATC TTTTTTAAATTCTGA TERM 3618 3324039 - 3324055 + T 72 -3.7 -5.30575 | opp_overlap 3324039, overlap 3324040 AAATCTTTTTTAAAT TCTGATT GAC AATCAGC TTTTTTCAATTTTTG TERM 3619 3324040 - 3324054 + T 70 -7.2 -3.75905 | opp_overlap 3324039, overlap 3324039 AATCTTTTTTAAATT CTGATT GAC AATCAG CTTTTTTCAATTTTT Cthe_2815 3325652 - 3324051 - | lysyl-tRNA synthetase TERM 3620 3324180 - 3324201 + g 71 -5.3 -4.56436 | gap 1 GCGGTACATGGTTTT GAAAAA-CAG GAG CTGATTTTTC TTGTTTTCTTTCATG TERM 3621 3324787 - 3324755 - G 71 -9.4 -2.75039 | gap 1 GATATATTTTAAGCA GCTCTTCAAGGTTTA TGTT TAAACCT-GAAGAAC CGGACATTTTTCCTG TERM 3622 3325415 - 3325425 + g 81 -6.8 -4.7329 | ACTCTTCGATTTTTT CCTG TGG CAGG TTTTTAGGTACTTTT Cthe_2816 3327212 - 3325992 - | transposase, mutator type TERM 3623 3326474 - 3326449 - G 74 -6.1 -4.37092 | overlap 3326450 ACGTTTCTCATAAAA TGTACACGGCA TCTT TGCCATGCACT TCCCGTTAAAATCTT TERM 3624 3326473 - 3326450 - G 73 -9.6 -3.21934 | overlap 3326449 CGTTTCTCATAAAAT GTACACGGCA TCTT TGCCATGCAC TTCCCGTTAAAATCT TERM 3625 3327849 - 3327837 - H 72 -3.4 -5.26316 | TTATTTTATAAAAAA TGCA AAATA TGCA GGAAAAATAAATATT TERM 3626 3328300 - 3328326 + H 74 -8.8 -3.30731 | overlap 3328301 ATTGCCCTTCAGGTT TTGTTTCTCTCG ATA TGAGAGAAGCAG TCTTATCATAATTGC TERM 3627 3328301 - 3328325 + H 77 -10.1 -2.57957 | overlap 3328300 TTGCCCTTCAGGTTT TGTTTCTCTCG ATA TGAGAGAAGCA GTCTTATCATAATTG Cthe_2817 3328547 - 3328972 + | CheW protein Cthe_2818 3328988 - 3330796 + | CheA signal transduction histidine kinases TERM 3628 3330885 - 3330868 - g 71 -4.1 -4.87318 | overlap 3330861 TGTAAAATTGAAAAA TTCAGAG CTTT CTCAGAA AATCTACGAAACAGT TERM 3629 3333412 - 3333382 - g 73 -8.2 -3.89501 | overlap 3333385 GAATATGGTGACAAA TCAGGCAGCCCAGG TAA CCCAGGCTACCAAA GAGCAGGCGGCAAGT TERM 3630 3333409 - 3333385 - g 82 -12.1 -3.01422 | overlap 3333382 TATGGTGACAAATCA GGCAGCCCAGG TAA CCCAGGCTACC AAAGAGCAGGCGGCA Cthe_2819 3330830 - 3335254 + | methyl-accepting chemotaxis sensory transducer TERM 3631 3335334 - 3335310 - f 79 -10 -2.8547 | opp_overlap 3335308 AGTCTGTATATTATA TTGGAGAGGC TTTAT GCCTCTCCAC AGATTCTGTCAGGGA Cthe_2820 3335367 - 3336200 + | MCP methyltransferase, CheR-type Cthe_2821 3336179 - 3337273 + | response regulator receiver modulated CheB methylesterase Cthe_2822 3337478 - 3338464 + | oxidoreductase-like protein TERM 3632 3339004 - 3339028 + F 78 -9.3 -3.38699 | overlap 3339002 AGAAAATCTTTTAAG GCCACACCG TTTCGGC TGGTGTGGC TATCTTCTTTATCCA Cthe_2823 3339201 - 3339497 + | hypothetical protein TERM 3633 3339679 - 3339721 + F 100 -18 -4.27117 | opp_overlap 3339683 CGAATGACTCACCTA TAGAGCCTGGCAGATAGTCT TAA AAACTATTTGTCAGGCTCTA TTTATGTTCTCGGAG TERM 3634 3339717 - 3339683 - f 83 -10.8 -2.91912 | opp_overlap 3339679 TGACTCACCTATAGA GCCTGGCAGATAGTCT TAA AAACTATTTGTCAGGC TCTATTTATGTTCTC Cthe_2824 3339763 - 3340554 + | hypothetical protein TERM 3635 3340723 - 3340739 + F 71 -8.7 -2.94962 | opp_overlap 3340722, overlap 3340718 TCTGCAGTATTAATT GCGGCAA TAG TTGCTGC TGTGATTCATAATAT TERM 3636 3340899 - 3340847 - f 83 -8.1 -4.27117 | opp_overlap 3340855 3340858, overlap 3340850 3340869 3340898 TTTTCAGAATAGAAA TAATATAATAATGCCAGGAAA AGGCAGAAAAG TTTCCTGGCATTATTATAATG CAACCACGGATTGCA TERM 3637 3340896 - 3340850 - f 100 -14.2 -4.25053 | opp_overlap 3340855 3340858, overlap 3340847 3340869 TCAGAATAGAAATAA TATAATAATGCCAGGAAA AGGCAGAAAAG TTTCCTGGCATTATTATA ATGCAACCACGGATT TERM 3638 3340855 - 3340891 + F 80 -9.7 -3.40403 | opp_overlap 3340850 3340847 3340869, overlap 3340858 ATAGAAATAATATAA TAATGCCAGGAAA AGGCAGAAAAG TTTCCTGGCATTA TTATAATGCAACCAC Cthe_2825 3340946 - 3342793 + | hypothetical protein Cthe_2826 3342816 - 3344054 + | hypothetical protein Cthe_2827 3344480 - 3344791 + | hypothetical protein Cthe_2828 3344804 - 3345274 + | hypothetical protein TERM 3639 3345456 - 3345437 - T 83 -8 -4.26188 | opp_overlap 3345440, overlap 3345454 TTTATAGATTCAAAA GAATTTCT GATA AGAAATTC TTACAAAAGAAAAAT TERM 3640 3345506 - 3345538 + T 100 -15.8 -3.49182 | gap 1, opp_overlap 3345503 3345519, overlap 3345502 TAAAATATTACAGGG GGGGTTCA-GGAAAC CAGA GTTTCCCTGAACCCC TTGATTATACTATAT Cthe_2829 3345991 - 3345548 - | ISDet4, transposase Cthe_2830 3346803 - 3346045 - | IstB-like ATP-binding protein TERM 3641 3346615 - 3346636 + g 90 -11.6 -3.79906 | opp_overlap 3346601 AGGAAAGCCTGCTTG CCGGATCC CTCTCT GGATCCGG TTATTCTCCCGCTGA Cthe_2831 3348287 - 3346803 - | transposase TERM 3642 3348401 - 3348415 + r 71 -8.6 -2.92789 | opp_overlap 3348400 3348397, overlap 3348394 AGTAGCATTAACACT GGTGTA CTA TACACC TCTGATATTCAGTAT Cthe_2832 3349097 - 3348393 - | transposase, mutator type TERM 3643 3348707 - 3348695 - G 73 -7.7 -3.90586 | opp_overlap 3348695 3348694 ATACTATCGGATAAA CCTCT CCC AGAGG CCTTTTCTGCCACTC Cthe_2833 3349682 - 3350029 + | hypothetical protein TERM 3644 3350125 - 3350073 - f 83 -8.1 -4.27117 | opp_overlap 3350081 3350084, overlap 3350076 3350095 3350124 TTTTCAGAATAGAAA TAATATAATAATGCCAGGAAA AGGCAGAAAAG TTTCCTGGCATTATTATAATG CAACCACGGATTGCA TERM 3645 3350122 - 3350076 - f 100 -14.2 -4.25053 | opp_overlap 3350081 3350084, overlap 3350073 3350095 TCAGAATAGAAATAA TATAATAATGCCAGGAAA AGGCAGAAAAG TTTCCTGGCATTATTATA ATGCAACCACGGATT TERM 3646 3350081 - 3350117 + F 80 -9.7 -3.40403 | opp_overlap 3350076 3350073 3350095, overlap 3350084 ATAGAAATAATATAA TAATGCCAGGAAA AGGCAGAAAAG TTTCCTGGCATTA TTATAATGCAACCAC Cthe_2834 3350172 - 3351857 + | hypothetical protein Cthe_2835 3351870 - 3352448 + | hypothetical protein TERM 3647 3352521 - 3352550 + F 77 -4.1 -5.35224 | opp_overlap 3352521 AAAGTTTAACTAATA CCCGGCAAGCC AATATAAC GGCAAGTCGGG TTTTCTTTTTATCCA Cthe_2836 3352630 - 3353019 + | hypothetical protein TERM 3648 3353201 - 3353244 + F 100 -13.4 -4.1891 | opp_overlap 3353205 CGAATGACTCACCTA TAGAGTCTGGCAGATAGTCT TAAA AAACTATTTGTCAGGCTCTA TTTATATTCGGCGAG TERM 3649 3353820 - 3353801 - g 74 -6.4 -4.36914 | gap 1 CTTCCTTTGACAAAA CCCCGGCAG AAG CT-CCGGAG TGGCTGTTAAAGCTT Cthe_2837 3353530 - 3354081 + | prophage Lp4 protein 7, DNA replication TERM 3650 3354427 - 3354381 - f 100 -14.2 -4.25053 | opp_overlap 3354386 3354389, overlap 3354400 TCAGAATAGAAATAA TATAATAATGCCAGGAAA AGGCAGAAAAG TTTCCTGGCATTATTATA AGGCAACCACGGATT TERM 3651 3354386 - 3354422 + F 78 -9.7 -3.28712 | opp_overlap 3354381 3354400, overlap 3354389 ATAGAAATAATATAA TAATGCCAGGAAA AGGCAGAAAAG TTTCCTGGCATTA TTATAAGGCAACCAC Cthe_2838 3354477 - 3356318 + | hypothetical protein TERM 3652 3356502 - 3356490 - g 71 -6.3 -4.13911 | CAAAAGACAATCAAA GCATA ATT TATGC TACATATAGAGGAAT Cthe_2839 3356345 - 3357583 + | hypothetical protein TERM 3653 3357680 - 3357704 + F 80 -7.2 -4.55798 | gap 1 GAATTTTATATAATG CGGGCGGTAAT GGTA ATT-CTGCCCG TTTTAATTTAAACTG Cthe_2840 3358087 - 3358431 + | hypothetical protein Cthe_2841 3358458 - 3358892 + | hypothetical protein Cthe_2842 3358867 - 3359211 + | hypothetical protein Cthe_2843 3359336 - 3359644 + | hypothetical protein TERM 3654 3359990 - 3359944 - f 100 -14.2 -4.25053 | opp_overlap 3359949 3359952, overlap 3359963 TCAGAATAGAAATAA TATAATAATGCCAGGAAA AGGCAGAAAAG TTTCCTGGCATTATTATA AGGCAACCACGGATT TERM 3655 3359949 - 3359985 + F 78 -9.7 -3.28712 | opp_overlap 3359944 3359963, overlap 3359952 ATAGAAATAATATAA TAATGCCAGGAAA AGGCAGAAAAG TTTCCTGGCATTA TTATAAGGCAACCAC Cthe_2844 3360466 - 3361671 + | hypothetical protein Cthe_2845 3361676 - 3361972 + | hypothetical protein TERM 3656 3362061 - 3362090 + F 77 -4.1 -5.35224 | opp_overlap 3362061 AGTCTTAATACAATA CCCGGCAAGCC AATACAAC GGCAAGTCGGG TTTTCTTTTTATCCA TERM 3657 3362274 - 3362264 - g 71 -6.8 -4.05714 | AGCTTCAAGCACAAA TGCC GGA GGCA AGTGTTACCACATCA Cthe_2846 3362170 - 3362559 + | hypothetical protein TERM 3658 3362737 - 3362787 + F 85 -8.4 -4.36914 | opp_overlap 3362745, overlap 3362743 GGAGCACAAGACTCA CCTATAGAGCCTGGCAGATAGTCT AAA AAACTATTTGTCAGGCTCTTTAAA TTTTCTAGCACGACA TERM 3659 3362743 - 3362781 + F 100 -16.2 -3.96705 | opp_overlap 3362745, overlap 3362737 CAAGACTCACCTATA GAGCCTGGCAGATAGTCT AAA AAACTATTTGTCAGGCTC TTTAAATTTTCTAGC TERM 3660 3362779 - 3362745 - f 83 -10.8 -2.92091 | opp_overlap 3362743 3362737 AGACTCACCTATAGA GCCTGGCAGATAGTCT AAA AAACTATTTGTCAGGC TCTTTAAATTTTCTA TERM 3661 3363384 - 3363406 + G 72 -8.4 -3.57263 | opp_overlap 3363384 TGAAGCTCATGGAAA GGGTGGAAGT ATT GCTTACACCC TTTGAAGGTAGCAGT TERM 3662 3363406 - 3363384 - g 70 -7.7 -3.66874 | opp_overlap 3363384 TGAAGCTCATGGAAA GGGTGGAAG TATTG CTTACACCC TTTGAAGGTAGCAGT Cthe_2847 3362822 - 3364975 + | P4 family phage/plasmid primase TERM 3663 3365440 - 3365428 - g 82 -6.3 -4.83593 | AAGAATTATCAAAAA TCAGA ACC TCTGA GCCAATATTGAATAT TERM 3664 3365894 - 3365878 - g 74 -5.1 -4.81551 | CAGGCACACGAAAAA CAGCC AAGTTAA GGCTG ATTCAACTGAAAGCC Cthe_2848 3365247 - 3366560 + | phage major capsid protein, HK97 TERM 3665 3366689 - 3366665 - f 100 -14.4 -3.1332 | opp_overlap 3366662 TAACAGACTATTTAA CAGTGGGTAG TTCTC CTACCCACTG GAATGCTTCGAACCC TERM 3666 3366996 - 3366972 - g 73 -5.7 -4.58283 | opp_overlap 3366979 GAAGTGTGGGAAAAA TCGTTGTCCAG CGG CTGGATAAAGA AGCTGGTTCTCAAAA Cthe_2849 3366819 - 3367121 + | hypothetical protein TERM 3667 3368113 - 3368099 - g 73 -7.1 -4.0348 | overlap 3368088 ATATCAGACGATAAA GCCTG TGCAT CAGGC GCTTAAAATACAGCG TERM 3668 3368189 - 3368177 - g 70 -5.5 -4.42974 | TGGAGACACAAGAAA GGACT ATC AGCCC GAAAGGGATTTTATT Cthe_2850 3367449 - 3368705 + | transposase IS116/IS110/IS902 Cthe_2851 3369138 - 3369425 + | hypothetical protein TERM 3669 3369444 - 3369470 + F 83 -5.9 -5.20333 | gap 1 TTAATATACTATGCA GGTCACA-CAGT TTCG GCTGGTGTGGCC TTTTTATTGTCCATG Cthe_2852 3369641 - 3369937 + | hypothetical protein TERM 3670 3370119 - 3370161 + F 100 -18 -4.27117 | opp_overlap 3370123 CGAATGACTCACCTA TAGAGCCTGGCAGATAGTCT TAA AAACTATTTGTCAGGCTCTA TTTATGTTCTCGGAG TERM 3671 3370157 - 3370123 - f 83 -10.8 -2.91912 | opp_overlap 3370119 TGACTCACCTATAGA GCCTGGCAGATAGTCT TAA AAACTATTTGTCAGGC TCTATTTATGTTCTC TERM 3672 3370312 - 3370301 - g 72 -4.4 -4.68424 | CAAGGCAGGGAAAAA TTGC GACA GCAA GGGAAAGCATCCGTT Cthe_2853 3370194 - 3370994 + | prophage Lp4 protein 7, DNA replication TERM 3673 3371340 - 3371294 - f 83 -8.4 -4.25053 | opp_overlap 3371299 3371302, overlap 3371313 TCAGAATAGAAATAA TATAATAATGCTAGGAAA AGGCAGAAAAG TTTCCTGGCATTATTATA AGGCAACCACGGATT Cthe_2854 3371390 - 3373237 + | hypothetical protein Cthe_2855 3373261 - 3374499 + | hypothetical protein Cthe_2856 3374708 - 3375235 + | hypothetical protein Cthe_2857 3375248 - 3375718 + | hypothetical protein TERM 3674 3375900 - 3375881 - T 83 -8 -4.26188 | opp_overlap 3375884, overlap 3375898 TTTATAGATTCAAAA GAATTTCT GATA AGAAATTC TTACAAAAGAAAAAT TERM 3675 3375990 - 3375940 - T 91 -9.8 -4.3898 | opp_overlap 3375944 3375949, overlap 3375949 ATGATGCGTATAAAA TATTACAGAGGGGTTCAGGAAACC AGA GTTTCCCTGAACCCCTTGATTATA CTATATACGCCCTTC TERM 3676 3375944 - 3375985 + T 85 -10.4 -3.49777 | opp_overlap 3375940 3375949, overlap 3375949 TGCGTATAAAATATT ACAGAGGGGTTCA-GGAAAC CAGA GTTTCCCTGAACCCCT-TGA TTATACTATATACGC TERM 3677 3375949 - 3375981 + T 100 -15.8 -3.49182 | gap 1, opp_overlap 3375940 3375949, overlap 3375944 ATAAAATATTACAGA GGGGTTCA-GGAAAC CAGA GTTTCCCTGAACCCC TTGATTATACTATAT TERM 3678 3375981 - 3375949 - T 100 -17.1 -3.0641 | opp_overlap 3375949 3375944, overlap 3375940 ATAAAATATTACAGA GGGGTTCAGGAAACC AGA GTTTCCCTGAACCCC TTGATTATACTATAT Cthe_2858 3377127 - 3375991 - | transposase, mutator type TERM 3679 3376725 - 3376713 - G 73 -7.7 -3.90586 | opp_overlap 3376713 3376712 ATACTATCGGATAAA CCTCT CCC AGAGG CCTTTTCTGCCACTC Cthe_2859 3377700 - 3378047 + | hypothetical protein TERM 3680 3378143 - 3378091 - f 83 -8.1 -4.27117 | opp_overlap 3378099 3378102, overlap 3378094 3378113 3378142 TTTTCAGAATAGAAA TAATATAATAATGCCAGGAAA AGGCAGAAAAG TTTCCTGGCATTATTATAATG CAACCACGGATTGCA TERM 3681 3378140 - 3378094 - f 100 -14.2 -4.25053 | opp_overlap 3378099 3378102, overlap 3378091 3378113 TCAGAATAGAAATAA TATAATAATGCCAGGAAA AGGCAGAAAAG TTTCCTGGCATTATTATA ATGCAACCACGGATT TERM 3682 3378099 - 3378135 + F 80 -9.7 -3.40403 | opp_overlap 3378094 3378091 3378113, overlap 3378102 ATAGAAATAATATAA TAATGCCAGGAAA AGGCAGAAAAG TTTCCTGGCATTA TTATAATGCAACCAC Cthe_2861 3379902 - 3380144 + | hypothetical protein TERM 3683 3380199 - 3380155 - f 100 -13.2 -2.64061 | gap 1, opp_overlap 3380155 3380157, overlap 3380151 3380152 TATAATTACAAGTTA TC-TGTATAGGTCATACAAGT TTTA ACCGGTATGACCTATACATGA TTCGGTTTACGGAGC TERM 3684 3380155 - 3380199 + F 85 -11 -3.27525 | gap 1, opp_overlap 3380155 3380151 3380152, overlap 3380157 TATAATTACAAGTTA TC-TGTATAGGTCATACAAGT TTTA ACCGGTATGACCTATACATGA TTCGGTTTACGGAGC TERM 3685 3380157 - 3380196 + F 100 -13.8 -2.81888 | opp_overlap 3380155 3380151 3380152, overlap 3380155 TAATTACAAGTTATC TGTATAGGTCATACAAGT TTTA ACCGGTATGACCTATACA TGATTCGGTTTACGG Cthe_2862 3380249 - 3380851 + | hypothetical protein TERM 3686 3380917 - 3380906 - f 74 -3 -5.38249 | ACGAATCATAAAAAA CTTA AGCT TAAG GGATAGGGAGAATTT TERM 3687 3380936 - 3380962 + F 81 -4.4 -5.35815 | TAGGGAGAATTTGCA GGTCACGTAATT TCA ACTAATGTGACC TTTTTGTTTAATATA Cthe_2863 3381065 - 3382069 + | hypothetical protein TERM 3688 3382325 - 3382351 + F 87 -5.2 -5.62045 | gap 1 TAGGTGTCTTTTTAA GGTCACA-CAG TTTCGT CTGATGTGGCC TTTTTTCTTATCTAT Cthe_2864 3382430 - 3382819 + | hypothetical protein TERM 3689 3383001 - 3383043 + F 100 -18 -4.27117 | opp_overlap 3383005 CGAATGACTCACCTA TAGAGCCTGGCAGATAGTCT TAA AAACTATTTGTCAGGCTCTA TTTATGTTCTCGGAG TERM 3690 3383039 - 3383005 - f 83 -10.8 -2.91912 | opp_overlap 3383001 TGACTCACCTATAGA GCCTGGCAGATAGTCT TAA AAACTATTTGTCAGGC TCTATTTATGTTCTC TERM 3691 3383638 - 3383660 + G 72 -8.4 -3.57263 | opp_overlap 3383627 3383638 TAAAGCTCATGGAAA GGGTGGAAGT ATT GCTTACACCC TTTGAAGGTAGCAGT TERM 3692 3383660 - 3383638 - g 70 -7.7 -3.67588 | opp_overlap 3383638, overlap 3383627 TAAAGCTCATGGAAA GGGTGGAAG TATTG CTTACACCC TTTGAAGGTAGCAGT TERM 3693 3383914 - 3383885 - g 73 -8.6 -3.71848 | opp_overlap 3383905 3383906, overlap 3383905 TCCTCCGATGAAGAA GCATTACCACAG GACAGA CAGCGGTAATGC AGAAAGGCTGCGTGA Cthe_2865 3383076 - 3385229 + | P4 family phage/plasmid primase TERM 3694 3386147 - 3386131 - g 74 -5.1 -4.81551 | CAGGCACACGAAAAA CAGCC AAGTTAA GGCTG ATTCAACTGAAAGCC Cthe_2866 3385500 - 3386813 + | phage major capsid protein, HK97 Cthe_2867 3387138 - 3387440 + | hypothetical protein TERM 3695 3387756 - 3387720 - f 74 -9.5 -2.52516 | overlap 3387719 CTTGCGAGGATTAAG GTCAAGGGACACTTCTT TAC AAGAAATGTCCCTAATC GAATCTAACGCTCTT TERM 3696 3388457 - 3388443 - g 73 -7.1 -4.0348 | overlap 3388432 ATATCAGACGATAAA GCCTG TGCAT CAGGC GCTTAAAATACAGCG TERM 3697 3388533 - 3388521 - g 70 -5.5 -4.42974 | TGGAGACACAAGAAA GGACT ATC AGCCC GAAAGGGATTTTATT Cthe_2868 3387793 - 3389049 + | transposase IS116/IS110/IS902 Cthe_2869 3389505 - 3389798 + | hypothetical protein TERM 3698 3390469 - 3390484 + G 73 -5.4 -4.57341 | GAACATTGTCGAGTG CTTTCG CGTC CGAGAG TTTTTCCGACCGGTT Cthe_2870 3390246 - 3391547 + | hypothetical protein TERM 3699 3391980 - 3391968 - g 71 -6.9 -4.05208 | AGTTACAGCAAAGAA GCCCA TGC CGGGC TTGCCAAAATGTATG Cthe_2871 3391587 - 3392099 + | TipAS antibiotic-recognition TERM 3700 3392119 - 3392157 + T 100 -10.4 -4.79352 | opp_overlap 3392124, overlap 3392124 AAATTATGGATATTA AAAAAGGTTGACTGCC TTTGTTT GGCAGTCAACCTTTAA TTTTATTATAAGTCC TERM 3701 3392152 - 3392124 - T 100 -14.7 -5.22312 | opp_overlap 3392119 3392124 ATGGATATTAAAAAA GGTTGACTGCC TTTGTTT GGCAGTCAACC TTTAATTTTATTATA TERM 3702 3392124 - 3392152 + T 100 -14.7 -4.35361 | opp_overlap 3392124, overlap 3392119 ATGGATATTAAAAAA GGTTGACTGCC TTTGTTT GGCAGTCAACC TTTAATTTTATTATA Cthe_2872 3393882 - 3392182 - | glycoside hydrolase family protein Cthe_2873 3394886 - 3394185 - | hypothetical protein Cthe_2874 3395284 - 3397101 + | phosphoenolpyruvate carboxykinase TERM 3703 3397148 - 3397122 - f 100 -12.4 -4.64598 | opp_overlap 3397122 CAATGAGTGGAAAAA GGAGTCGTGA TGTTTTG TCACGACTCC TTTTTATAATTTTGC TERM 3704 3397122 - 3397148 + F 100 -13.8 -5.09245 | opp_overlap 3397122 CAATGAGTGGAAAAA GGAGTCGTGATG TTT TGTCACGACTCC TTTTTATAATTTTGC TERM 3705 3397268 - 3397319 + F 74 -3.8 -5.1634 | opp_overlap 3397283 3397286, overlap 3397283 3397286 GGATAATACATGTTT CGAAGCAAAAAAAAAGACCGAAAC TTAA GTTTCGCTCTTCTTAGTTGGTTTG TTTTTATATGTTTGT TERM 3706 3397304 - 3397283 - f 100 -7.3 -6.23209 | opp_overlap 3397268 3397283 3397286, overlap 3397286 CGAAGCAAAAAAAAA GACCGAAAC TTAA GTTTCGCTC TTCTTAGTTGGTTTG TERM 3707 3397283 - 3397304 + F 72 -7.3 -3.87638 | opp_overlap 3397283 3397286, overlap 3397268 3397286 CGAAGCAAAAAAAAA GACCGAAAC TTAA GTTTCGCTC TTCTTAGTTGGTTTG TERM 3708 3397301 - 3397286 - f 71 -7.6 -3.41145 | opp_overlap 3397283 3397268 3397286, overlap 3397283 AGCAAAAAAAAAGAC CGAAAC TTAA GTTTCG CTCTTCTTAGTTGGT TERM 3709 3398346 - 3398320 - f 100 -14 -2.97825 | opp_overlap 3398320 3398323, overlap 3398313 3398323 3398338 ATTAATAATAGCACA CAAGTATTGTAA AAG TTACAATACTTG TTATTGACGGAAAGG TERM 3710 3398320 - 3398346 + F 100 -14 -3.61398 | opp_overlap 3398320 3398313 3398323 3398338, overlap 3398323 ATTAATAATAGCACA CAAGTATTGTAA AAG TTACAATACTTG TTATTGACGGAAAGG TERM 3711 3398343 - 3398323 - f 86 -9.9 -3.62022 | opp_overlap 3398320 3398323, overlap 3398320 3398313 3398338 AATAATAGCACACAA GTATTGTAA AAG TTACAATAC TTGTTATTGACGGAA TERM 3712 3398323 - 3398343 + F 87 -9.9 -3.9461 | opp_overlap 3398323 3398320 3398313 3398338, overlap 3398320 AATAATAGCACACAA GTATTGTAA AAG TTACAATAC TTGTTATTGACGGAA Cthe_2875 3398376 - 3398909 + | sigma 54 modulation protein / SSU ribosomal protein S30P TERM 3713 3398964 - 3398997 + F 100 -8.9 -5.47159 | opp_overlap 3398970, overlap 3398970 ATTTTCTAATATAAT TGAAAATGCCGAGGC ATAT GTCTCGGCATTTAAA TTTTTATTTATTGGA TERM 3714 3398970 - 3398991 + F 100 -12.3 -4.06851 | opp_overlap 3398970, overlap 3398964 TAATATAATTGAAAA TGCCGAGGC ATAT GTCTCGGCA TTTAAATTTTTATTT TERM 3715 3398991 - 3398970 - f 93 -10.1 -4.35874 | opp_overlap 3398964 3398970 TAATATAATTGAAAA TGCCGAGGC ATAT GTCTCGGCA TTTAAATTTTTATTT TERM 3716 3399137 - 3399126 - g 75 -5.8 -4.79451 | opp_overlap 3399131 AGCGGAAAGACAAAA GTGC TTAC GCAC AGGATTGCGTATTTA TERM 3717 3399602 - 3399615 + G 76 -2.4 -5.41143 | opp_overlap 3399602 TGACGATATTATAAT GCTT ACGATA AAGC TTTTTTTGGACAATC TERM 3718 3400058 - 3400034 - g 75 -7.8 -4.09108 | opp_overlap 3400034, overlap 3400036 GGCAAGTGAGATAAA GAGGCTCTGC AGGGA GCAGAACCGC TCTTACAAGGATTTT TERM 3719 3400056 - 3400036 - g 76 -9 -3.63761 | opp_overlap 3400034, overlap 3400034 CAAGTGAGATAAAGA GGCTCTGC AGGGA GCAGAACC GCTCTTACAAGGATT TERM 3720 3400533 - 3400514 - g 74 -6.4 -4.41353 | overlap 3400506 3400516 GTATAGACAGGAAAA TACCCTGG AAGC CCAGAGCA GAATAGAAAACATAA Cthe_2876 3399024 - 3401249 + | ATP-dependent DNA helicase PcrA TERM 3721 3402921 - 3402908 - g 71 -5.3 -4.4891 | opp_overlap 3402908 CTCATCAGGACAAAA GTTTG ATTT CAAAC TGTTGGACAAAAATA Cthe_2877 3401397 - 3403154 + | S-layer-like domain-containing protein TERM 3722 3403182 - 3403227 + F 100 -18.5 -4.07885 | opp_overlap 3403186 3403190, overlap 3403186 TGTTTACAGGATTGA TTAATTTAGGCTGTGCCGGGG TTGC TCCCGGTACAGCCTGAATTCA TTTTGGGAAAGAGTA TERM 3723 3403186 - 3403223 + F 100 -19.3 -3.66908 | opp_overlap 3403186 3403190, overlap 3403182 TACAGGATTGATTAA TTTAGGCTGTGCCGGGG TTGC TCCCGGTACAGCCTGAA TTCATTTTGGGAAAG TERM 3724 3403223 - 3403186 - f 100 -14.2 -3.1994 | opp_overlap 3403182 3403186, overlap 3403190 TACAGGATTGATTAA TTTAGGCTGTGCCGGG GTTGCT CCCGGTACAGCCTGAA TTCATTTTGGGAAAG TERM 3725 3403219 - 3403190 - f 100 -15 -2.57244 | opp_overlap 3403186 3403182, overlap 3403186 GGATTGATTAATTTA GGCTGTGCCGGG GTTGCT CCCGGTACAGCC TGAATTCATTTTGGG Cthe_2878 3403324 - 3404217 + | peptidase C39, bacteriocin processing Cthe_2879 3406004 - 3404469 - | cellulosome enzyme, dockerin type I Cthe_2880 3406523 - 3407779 + | ATP phosphoribosyltransferase regulatory subunit Cthe_2881 3407797 - 3408438 + | ATP phosphoribosyltransferase catalytic subunit Cthe_2882 3408444 - 3409751 + | histidinol dehydrogenase TERM 3726 3409928 - 3409913 - f 72 -3.4 -5.2112 | AATATTATCAAAAAA TATATT TAGA AATATA TTCGGCAAATAAATA Cthe_2883 3409985 - 3411061 + | histidinol phosphate aminotransferase Cthe_2884 3411174 - 3411761 + | imidazoleglycerol-phosphate dehydratase Cthe_2885 3411864 - 3412748 + | phosphoribosylaminoimidazole-succinocarboxamide synthase TERM 3727 3412756 - 3412788 + F 100 -12.9 -3.18065 | opp_overlap 3412756 TTGCGTAACTTAAAA CACTCCCCTTTTA CTTGTTT TAGAAGGGGAGTG TTGGGTGTATATACT TERM 3728 3412788 - 3412756 - f 95 -10.7 -4.27316 | opp_overlap 3412756 TTGCGTAACTTAAAA CACTCCCCTTTTA CTTGTTT TAGAAGGGGAGTG TTGGGTGTATATACT TERM 3729 3413368 - 3413354 - g 73 -7.2 -4.07568 | opp_overlap 3413341, overlap 3413334 TGTTGCGGTGCAAAA GCAAAA TGT TTTTGC TACCCAGTTCCATCC Cthe_2886 3412830 - 3413444 + | imidazole glycerol phosphate synthase subunit hisH TERM 3730 3413485 - 3413473 - f 84 -6.3 -5.29445 | TTTGAATAATAAAAA CCTTT TTA AAAGG CGCTTAATTTAGCTT Cthe_2887 3413519 - 3414232 + | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase Cthe_2888 3414245 - 3415006 + | imidazole glycerol phosphate synthase subunit hisF Cthe_2889 3415028 - 3415690 + | bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP pyrophosphatase protein TERM 3731 3416309 - 3416294 - g 72 -9 -3.28791 | overlap 3416304 3416305 AGGCTTTGGGCATAA TCGGAC AAAA GTCCGA TACGGAGGAATACCA Cthe_2890 3415714 - 3416883 + | putative transcriptional regulator TERM 3732 3417223 - 3417208 - g 70 -3.2 -4.98531 | TCGGCAAAGGAAAAA CCCCAG GTGG CTGAAG TTGTAGCAGTAGGTC groES 3417106 - 3417390 + | co-chaperonin GroES Cthe_2892 3417439 - 3419064 + | chaperonin GroEL TERM 3733 3419124 - 3419097 - f 100 -12.8 -4.55697 | opp_overlap 3419097 ATGTGGATAAACAAA GAGAGATCCTTG TTGT CAAGGGTCTCTC TTTTATTTATGTGTT TERM 3734 3419097 - 3419124 + F 100 -15 -5.08878 | opp_overlap 3419097 ATGTGGATAAACAAA GAGAGATCCTTG TTGT CAAGGGTCTCTC TTTTATTTATGTGTT TERM 3735 3420232 - 3420222 - g 76 -3.2 -5.28414 | opp_overlap 3420229 TAAGAAATATAAAAA CAGA TTT TCCG GACATGCATGTTCAG Cthe_2893 3419315 - 3420370 + | response regulator receiver protein TERM 3736 3420849 - 3420863 + G 100 -7.2 -5.75342 | opp_overlap 3420840 3420848, overlap 3420843 AGGATAGGACAAAGT CCAAAA GGG TTTTGG TTTTTTTTGAACCCA Cthe_2894 3420404 - 3420934 + | hypothetical protein TERM 3737 3420957 - 3420976 + F 88 -3.5 -5.99154 | TATTGGCGAAAAACA GGAGGTC AAGGAG GGCTTCC TTTTTTTATTTAGTG TERM 3738 3421970 - 3422002 + G 95 -12 -4.21462 | CAAAATATGTTGATT GGGCCCATAGCAGA GGTTA TCAGGTATGGGCCC TTTTAAGTAATGACT Cthe_2895 3421057 - 3422808 + | glycoside hydrolase family protein Cthe_2896 3422884 - 3423837 + | hypothetical protein Cthe_2897 3424166 - 3424645 + | transcription elongation factor GreA TERM 3739 3424707 - 3424759 + F 76 -3.7 -5.51078 | opp_overlap 3424690 3424700 3424711 3424719, overlap 3424690 3424700 3424714 3424719 TATAAAAATATTATA AATATGTTAAAATAACAGTTTACAT TAA ATGTAAGCTGTTATTTTATTTAATA TTTTATTTTTATTTT TERM 3740 3424714 - 3424752 + F 100 -17.2 -4.14724 | opp_overlap 3424711 3424719, overlap 3424707 3424719 ATATTATAAATATGT TAAAATAACAGTTTACAT TAA ATGTAAGCTGTTATTTTA TTTAATATTTTATTT TERM 3741 3424747 - 3424719 - f 95 -10.5 -4.2243 | opp_overlap 3424714 3424707 3424719, overlap 3424711 ATAAATATGTTAAAA TAACAGTTTACAT TAA ATGTAAGCTGTTA TTTTATTTAATATTT TERM 3742 3424719 - 3424747 + F 100 -12.7 -5.00923 | opp_overlap 3424711 3424719, overlap 3424714 3424707 ATAAATATGTTAAAA TAACAGTTTACAT TAA ATGTAAGCTGTTA TTTTATTTAATATTT Cthe_2898 3424994 - 3425308 + | anti-sigma-factor antagonist Cthe_2899 3425321 - 3425713 + | putative anti-sigma regulatory factor, serine/threonine protein kinase Cthe_2900 3425716 - 3426474 + | RNA polymerase, sigma 28 subunit Cthe_2901 3426641 - 3427075 + | putative anti-sigma regulatory factor, serine/threonine protein kinase TERM 3743 3427756 - 3427741 - f 77 -9 -3.32819 | CATACAGGGGGATAA CACAGG GAAA CCTGTG CTAATACCGCATAAC TERM 3744 3428002 - 3427976 - f 89 -10.8 -3.57561 | GCGCAATGGGGGAAA CCCTGACGCAGC AAC GCCGCGTGAAGG AAGAAGGCCTTCGGG TERM 3745 3429107 - 3429121 + F 71 -8.6 -2.83715 | GTGCGGCTGGATCAC CTCCTT TCT AAGGAG TATAATGATACTACG TERM 3746 3429335 - 3429308 - f 100 -15.8 -3.56092 | opp_overlap 3429315, overlap 3429315 CCACCATTTTGCAAA TCAGAAAGCAAG GTTT CTTGCTTTCTGA AGATTGCACCTTGAA TERM 3747 3429328 - 3429315 - f 71 -6.7 -4.13654 | opp_overlap 3429315, overlap 3429308 TTTGCAAATCAGAAA GCAAG GTTT CTTGC TTTCTGAAGATTGCA TERM 3748 3429798 - 3429775 - f 75 -8.2 -3.66803 | overlap 3429768 GCGGAAGAGCCCAAA CCGAGCTATA GCAA TATAGTTCGG GGTTGCGGACCGGCA TERM 3749 3429856 - 3429839 - f 76 -8.5 -3.4178 | overlap 3429852 ACGAGCTTAGCAGAA GTAAGCT GGAA AGCTTAC ACCATAGAGGGTGAA TERM 3750 3430037 - 3430026 - f 76 -7.2 -4.2354 | GAAAGGTGAAAAGAA CCCC GGGA GGGG AGTGAAAGAGAACCT TERM 3751 3432652 - 3432620 - f 83 -10.6 -3.12327 | opp_overlap 3432621 3432625, overlap 3432625 CTGCCAGATTTAATA TCAAAGCCTTACGG TTGTT CCGTAGGGCTTTGT TTTATGTGCAAGTAG TERM 3752 3432621 - 3432651 + F 100 -16.3 -4.53303 | opp_overlap 3432620 3432625, overlap 3432625 TGCCAGATTTAATAT CAAAGCCTTACGG TTGTT CCGTAGGGCTTTG TTTTATGTGCAAGTA TERM 3753 3432647 - 3432625 - f 81 -9.1 -3.94184 | opp_overlap 3432621 3432625, overlap 3432620 AGATTTAATATCAAA GCCTTACGG TTGTT CCGTAGGGC TTTGTTTTATGTGCA TERM 3754 3432625 - 3432647 + F 100 -11.3 -4.83243 | opp_overlap 3432625 3432620, overlap 3432621 AGATTTAATATCAAA GCCTTACGG TTGTT CCGTAGGGC TTTGTTTTATGTGCA TERM 3755 3432978 - 3433011 + F 77 -8.2 -3.86202 | opp_overlap 3432989 ATTTGGATATGTTCA GCCCAGGTAAATAT ATATAA ATATATTCCTGGGC TTTAATATAGTCAAA Cthe_2902 3433095 - 3433406 + | SSU ribosomal protein S10P TERM 3756 3433467 - 3433454 - f 83 -6.7 -4.76041 | opp_overlap 3433452 3433454 CACATGCATGAAAAA GCTCT TGTG AGAGC TGTTTCATGAAGTGA Cthe_2903 3433509 - 3434147 + | 50S ribosomal protein L3P Cthe_2904 3434171 - 3434797 + | 50S ribosomal protein L4P Cthe_2905 3434797 - 3435150 + | 50S ribosomal protein L23P TERM 3757 3435429 - 3435419 - g 75 -5.4 -4.7268 | AAAGACGGAATAAAA GCAA AGG TTGC GGCTATAGAATATGA rplB 3435194 - 3436021 + | 50S ribosomal protein L2 TERM 3758 3436115 - 3436099 - g 86 -4.4 -5.42862 | AGATCGGTAAAAAAA GGACCA TATGT TGATCC GAAACTTCTTAAGAA rpsS 3436078 - 3436362 + | 30S ribosomal protein S19 TERM 3759 3436454 - 3436444 - f 91 -5.4 -5.74684 | opp_overlap 3436444 3436442 GAAGAAAAAGAAAAA GCTT TGG AAGC TATTAATGCCAAACA Cthe_2908 3436492 - 3436869 + | 50S ribosomal protein L22P Cthe_2909 3436889 - 3437569 + | SSU ribosomal protein S3P rplP 3437556 - 3437993 + | 50S ribosomal protein L16 Cthe_2911 3437983 - 3438186 + | 50S ribosomal protein L29P rpsQ 3438213 - 3438470 + | 30S ribosomal protein S17 Cthe_2913 3438495 - 3438863 + | 50S ribosomal protein L14P Cthe_2914 3438882 - 3439232 + | 50S ribosomal protein L24P Cthe_2915 3439258 - 3439806 + | 50S ribosomal protein L5P Cthe_2916 3439822 - 3440007 + | SSU ribosomal protein S14P Cthe_2917 3440034 - 3440432 + | SSU ribosomal protein S8P TERM 3760 3440620 - 3440599 - g 70 -3 -5.04325 | overlap 3440603 GTTAAAGGACAAAAA GGAACTTT GACGAA ACAGTTCC ACAAAGATATGATTA Cthe_2918 3440506 - 3441057 + | 50S ribosomal protein L6P TERM 3761 3441419 - 3441403 - g 73 -6.6 -4.25256 | GGTCGAGTAAAAGAA CTTGCA GAAGG TGCAAG AGAAGCAGGACTTGA Cthe_2919 3441073 - 3441441 + | 50S ribosomal protein L18P Cthe_2920 3441461 - 3441961 + | SSU ribosomal protein S5P TERM 3762 3442095 - 3442065 - g 71 -4.1 -4.88736 | gap 2, opp_overlap 3442094, overlap 3442092 TAGGACTCAGAAAAA GGGGT-TCCTG-TGT AGA ACAGCAGGATACTCC TCAGATAAGAGGTAT Cthe_2921 3441974 - 3442153 + | 50S ribosomal protein L30P Cthe_2922 3442168 - 3442608 + | 50S ribosomal protein L15P TERM 3763 3443767 - 3443742 - g 79 -9.1 -3.80625 | TCGCCATAATCCAAA TATTGCCTTCA TTAT TGCAGGCAATA ACCGGAATCAGAGGA Cthe_2923 3442610 - 3443893 + | protein translocase subunit secY/sec61 alpha Cthe_2924 3443957 - 3444610 + | adenylate kinase TERM 3764 3444954 - 3444970 + G 77 -9.5 -3.53012 | TGACGCCGCCAGGAC TTTTGCC GTA GGCAAAA TTTCCGGCGAAGCCC Cthe_2925 3444607 - 3445377 + | methionine aminopeptidase, type I Cthe_2926 3445409 - 3445681 + | hypothetical protein Cthe_2927 3445723 - 3445941 + | translation initiation factor 1 Cthe_2928 3445961 - 3446074 + | 50S ribosomal protein L36P rpsM 3446388 - 3446759 + | 30S ribosomal protein S13 Cthe_2930 3446781 - 3447185 + | 30S ribosomal protein S11 TERM 3765 3447697 - 3447686 - g 81 -5.8 -5.14626 | AGCAGTAAAAGAAAA GAGC AAGA GCTC ACCGAAGATGCAAAG Cthe_2931 3447237 - 3447863 + | SSU ribosomal protein S4P Cthe_2932 3448005 - 3448952 + | DNA-directed RNA polymerase, alpha subunit Cthe_2933 3449038 - 3449562 + | 50S ribosomal protein L17P Cthe_2934 3449604 - 3450503 + | ABC transporter related protein Cthe_2935 3451185 - 3450595 - | methyltransferase small TERM 3766 3450866 - 3450845 - G 74 -5.1 -4.6856 | GAAACATTGGAAAAA CCATCGCTT GTCA AAGCAGTGG CATTGGTAACACCGT Cthe_2936 3451618 - 3452463 + | cobalt transporter ATP-binding subunit Cthe_2937 3452471 - 3453280 + | cobalt transport protein Cthe_2938 3453351 - 3454304 + | glucokinase TERM 3767 3454322 - 3454347 + F 87 -11.2 -3.37556 | opp_overlap 3454314 3454313 AAAAGACTGCCAAGG GGGCAAAGGC GATGAG GCTTTTGCCC TTGAATTATTTTAAC truA 3454388 - 3455122 + | tRNA pseudouridine synthase A Cthe_2940 3455515 - 3455991 + | CarD family transcriptional regulator TERM 3768 3456028 - 3456050 + F 84 -6.4 -5.24129 | opp_overlap 3456032 TCTTCTAACTCTTGA TAAAGCTG CATGGCA CAGCTTTA TTTTTTATGGAAAAA Cthe_2941 3456214 - 3456927 + | 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase Cthe_2942 3456976 - 3457731 + | ABC transporter related protein TERM 3769 3458546 - 3458558 + GF 86 -4.7 -5.42259 | opp_overlap 3458546 ACAGGTTTTAGCATA CCGCC GTT GGCAG TTTTTTTGGCCGTCA TERM 3770 3458656 - 3458667 + GF 72 -4.4 -4.71186 | CTTTAAAGAGGCCCA GACA TACA TGTC TTTTCTGTTGATAAT Cthe_2943 3457697 - 3458914 + | ABC-2 type transporter TERM 3771 3458979 - 3458969 - f 77 -3.2 -5.54885 | overlap 3458962 AAGAGCAATAAAAAA GGAA AAA TCCC TTTTAATGTAGAATT TERM 3772 3459543 - 3459529 - g 76 -2.1 -5.43974 | AAAATGAAAGAAAAA TCAAG GAAAT CCTGA ATAATTACGCAAAAA Cthe_2944 3459183 - 3460997 + | periplasmic sensor signal transduction histidine kinase TERM 3773 3461063 - 3461049 - g 76 -4.4 -5.01732 | AAGCGCCGGAAAAAA TAAAAA GTG TTTTTA AAAGATTTAATATAA Cthe_2945 3461018 - 3462868 + | histidine kinase ispF 3463325 - 3462855 - | 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase TERM 3774 3463837 - 3463859 + H 84 -6.3 -5.21709 | opp_overlap 3463837 3463836 CGCGGAAAACAACAC TCCGTCC CATAGCAGT GGACGGA TTTTTTAATGTAAAC TERM 3775 3464316 - 3464296 - g 73 -6.9 -4.26871 | opp_overlap 3464295, overlap 3464298 CAACCCATGAAGAAA TATTTACCG AAA CGGTAAAAA GTGTTACAAGGTCGT TERM 3776 3464314 - 3464298 - g 79 -9.5 -3.72775 | opp_overlap 3464295, overlap 3464296 ACCCATGAAGAAATA TTTACCG AAA CGGTAAA AAGTGTTACAAGGTC Cthe_2947 3463959 - 3465677 + | prolyl-tRNA synthetase TERM 3777 3465753 - 3465725 - f 72 -8.9 -2.60392 | opp_overlap 3465725, overlap 3465724 3465727 CAGGGCTTAAGCAAG GAGTATCGCATGT TTG ACATGTGGTACTC TTTTTTTTATATAAA TERM 3778 3465725 - 3465753 + F 100 -13.3 -6.02914 | opp_overlap 3465725 3465724 3465727 CAGGGCTTAAGCAAG GAGTATCGCATGT TTG ACATGTGGTACTC TTTTTTTTATATAAA Cthe_2948 3465900 - 3466742 + | Allergen V5/Tpx-1 related TERM 3779 3466792 - 3466754 - T 74 -3.9 -5.14645 | opp_overlap 3466761, overlap 3466761 ATAAGCTAAGAAAAA TTTAGAATCTGCAGGAA AAAAA CTCCTGCAGATTTTTTA TTTTATACAGGCAAT TERM 3780 3466785 - 3466761 - T 89 -10.8 -3.5867 | opp_overlap 3466761, overlap 3466754 AAGAAAAATTTAGAA TCTGCAGGAA AAAAA CTCCTGCAGA TTTTTTATTTTATAC TERM 3781 3466761 - 3466785 + T 100 -10.1 -5.86976 | opp_overlap 3466754 3466761 AAGAAAAATTTAGAA TCTGCAGGA AAAAAAC TCCTGCAGA TTTTTTATTTTATAC Cthe_2949 3468498 - 3466795 - | pectinesterase TERM 3782 3468694 - 3468657 - R 86 -11.5 -2.84459 | gap 1, opp_overlap 3468666, overlap 3468666 AATATTATTACGATA CAAGATAAAGGGATGCCA TAT TGGAATCCC-TTATCCTG CACTAATTGGAATTA TERM 3783 3468686 - 3468666 - R 90 -9.7 -4.31766 | opp_overlap 3468666, overlap 3468657 ACGATACAAGATAAA GGGATGCCA TAT TGGAATCCC TTATCCTGCACTAAT TERM 3784 3468666 - 3468686 + r 80 -9.7 -3.4178 | opp_overlap 3468657 3468666 ACGATACAAGATAAA GGGATGCCA TAT TGGAATCCC TTATCCTGCACTAAT Cthe_2950 3470417 - 3468753 - | Pectate lyase/Amb allergen TERM 3785 3470558 - 3470571 + H 77 -3.9 -5.4593 | opp_overlap 3470558 ACTTTTTTTATCATA CAATA AAGC TATTG TTTTTCTTATTTTAA TERM 3786 3471389 - 3471411 + G 82 -6.2 -4.9725 | ACTTTTGCAAAATTT TTCCCCAAGG CAC CGGTGGGGAA TTTTTATGTAAACCT Cthe_2951 3470720 - 3471445 + | hypothetical protein Cthe_2952 3472173 - 3471448 - | IstB-like ATP-binding protein Cthe_2953 3472502 - 3472167 - | hypothetical protein Cthe_2954 3473125 - 3472643 - | hypothetical protein Cthe_2955 3473422 - 3473183 - | hypothetical protein Cthe_2956 3473477 - 3473947 + | hypothetical protein Cthe_2957 3473959 - 3474480 + | hypothetical protein TERM 3787 3474494 - 3474518 + F 100 -10.1 -5.6473 | opp_overlap 3474494 AAATATCGTTATACA GGTCATATAGT TCA GCTGTATGACC TTTTTTTGCTATTCT TERM 3788 3475523 - 3475548 + G 74 -6.1 -4.37092 | overlap 3475524 AAGATTTTAACGGGA AGTGCATGGCA AAGA TGCCGTGTACA TTTTATGAGAAACGT TERM 3789 3475524 - 3475547 + G 73 -9.6 -3.21934 | overlap 3475523 AGATTTTAACGGGAA GTGCATGGCA AAGA TGCCGTGTAC ATTTTATGAGAAACG Cthe_2958 3474785 - 3476005 + | transposase, mutator type TERM 3790 3477691 - 3477708 + G 76 -2.1 -5.44119 | gap 1, opp_overlap 3477683 3477691 TGAAAATGTTATAAA TAACTATC AAG GA-AGTTA TTTTTTTAGGCTAAG Cthe_2960 3477395 - 3477727 + | hypothetical protein TERM 3791 3477823 - 3477833 + T 75 -2.6 -5.55664 | TTATAGTAGTTTGTG TAAT TTT ATTA TTTTTTTACTGCTAA TERM 3792 3478180 - 3478223 + T 87 -8.8 -4.25606 | opp_overlap 3478182 3478183, overlap 3478177 3478181 ATACAGTTAATAAGA AATGGACGGTTCTTAGCCTG ACAT CAGACAAAGAACCGTCCGCA TTGTTTTAACTATTC TERM 3793 3478181 - 3478222 + T 90 -12.3 -3.14279 | opp_overlap 3478182 3478183, overlap 3478180 3478177 TACAGTTAATAAGAA ATGGACGGTTCTTAGCCTG ACAT CAGACAAAGAACCGTCCGC ATTGTTTTAACTATT TERM 3794 3478221 - 3478182 - T 100 -15.8 -4.47456 | opp_overlap 3478181 3478180 3478177, overlap 3478183 ACAGTTAATAAGAAA TGGACGGTTCTTAGCCTG ACAT CAGACAAAGAACCGTCCG CATTGTTTTAACTAT TERM 3795 3478220 - 3478183 - T 100 -19.3 -3.27389 | opp_overlap 3478181 3478180 3478177, overlap 3478182 CAGTTAATAAGAAAT GGACGGTTCTTAGCCTG ACAT CAGACAAAGAACCGTCC GCATTGTTTTAACTA Cthe_2961 3479858 - 3478233 - | extracellular solute-binding protein TERM 3796 3478591 - 3478603 + g 70 -7.7 -3.66178 | TGGAATACATTCCAT TCCTG AGC CAGGA TTTCAACTTCAACAC TERM 3797 3478754 - 3478739 - G 70 -9 -3.14463 | opp_overlap 3478746 AACCTGCCTCAGCAA GAAGCC TTTT GGCTTC AGCCACATTCTTTTC TERM 3798 3479411 - 3479427 + g 71 -7.2 -3.93166 | opp_overlap 3479398, overlap 3479426 CACCCAACGTACTGA CGTCGG CTTCA CCGGCG TTGATTTTTTCACCG TERM 3799 3479426 - 3479442 + g 73 -2.2 -5.26316 | overlap 3479411 CGTCGGCTTCACCGG CGTTGA TTTTT TCACCG TTTTTTATGAAATAA TERM 3800 3479468 - 3479458 - G 71 -6.8 -4.00042 | TTTTTTATGAAATAA GCGT AAT ACGC ATAATCGGCGGCTGT Cthe_2962 3481084 - 3480056 - | oligopeptide/dipeptide ABC transporter, ATPase subunit TERM 3801 3480768 - 3480793 + g 73 -7.5 -4.04174 | opp_overlap 3480775 TGCATTTTTTTCCTG TAGGGAAGGAG CTGT CCCCTTCCCAA TTTGGTTATATCAAC Cthe_2963 3482087 - 3481071 - | oligopeptide/dipeptide ABC transporter, ATPase subunit Cthe_2964 3483243 - 3482158 - | binding-protein-dependent transport systems inner membrane component TERM 3802 3482900 - 3482916 + g 71 -5.1 -4.64048 | TGCTGTGCGTTTGGA GGCAG ATTTTCA CTGCC TTTGTTTATCTGATC Cthe_2965 3484209 - 3483286 - | binding-protein-dependent transport systems inner membrane component TERM 3803 3483958 - 3483969 + g 72 -4.4 -4.78572 | TATTTCATTGACAGT CTGT CCCG ACAG TTTTATTGATTCCCC TERM 3804 3484610 - 3484635 + H 70 -4.1 -5.01811 | opp_overlap 3484611, overlap 3484602 3484611 AAGGAGAGTGAAAAT ATTGAAGAGAA AGAC TTTTCTTCAAA TTTTTGCTTTAATGG Cthe_2966 3484611 - 3485357 + | hypothetical protein TERM 3805 3485413 - 3485439 + F 78 -6.9 -4.49906 | opp_overlap 3485416 3485418 AATAACCGATTGCAA TTATATTATAT TTCCT ATATAATATAA TTTGTTTACATATTA TERM 3806 3485518 - 3485540 + F 90 -9.9 -4.11884 | opp_overlap 3485518 TGATATAAGAGAGAA CAGGGCAGT AATAA ACTGTCCTG TTTATAATTCTAATT TERM 3807 3485540 - 3485518 - f 73 -7.7 -3.74975 | opp_overlap 3485518 TGATATAAGAGAGAA CAGGGCAGT AATAA ACTGTCCTG TTTATAATTCTAATT Cthe_2967 3485676 - 3486854 + | major facilitator transporter TERM 3808 3486935 - 3486970 + T 79 -4.9 -5.26875 | gap 1, opp_overlap 3486935 TTAGAAAAAATGAAA GGAGCCAAAT-AACTT TAGAC AGGTTGATTTAGCTCC TTTTTTAATTAAGAC Cthe_2968 3487786 - 3487007 - | 4Fe-4S ferredoxin, iron-sulfur binding TERM 3809 3488133 - 3488159 + H 78 -9.7 -3.34013 | opp_overlap 3488135, overlap 3488131 AGTGCTTTTTGTATA TACTGTATATA GTGTA TATATACAGTA TTGATTGGAGGCATC Cthe_2969 3488178 - 3488552 + | GntR family transcriptional regulator Cthe_2970 3488557 - 3489408 + | ABC transporter related protein TERM 3810 3489657 - 3489667 + G 75 -5.4 -4.68908 | opp_overlap 3489649 3489651 GGATATATAGCTGCT GCTA CTG TAGC TTTATTTTCGATAGC Cthe_2971 3489405 - 3490016 + | hypothetical protein TERM 3811 3490038 - 3490058 + T 74 -6.2 -4.37157 | gap 1, opp_overlap 3490038 AATAAAGCAAAAAAA GGGGGAGTA ATTT TA-TCCCCC TTTGTTGTACTGATT TERM 3812 3490058 - 3490038 - T 100 -6.2 -5.77856 | gap 1, opp_overlap 3490038 AATAAAGCAAAAAAA GGGGGAGTA ATTT TA-TCCCCC TTTGTTGTACTGATT Cthe_2972 3492142 - 3490091 - | glycoside hydrolase family protein TERM 3813 3491081 - 3491107 + g 75 -5.9 -4.7871 | ATATAAGTCGTGCTG TCCTGTAGTGT TGGTT ATGCTGCAGGA TTTTTCCTCGTAATT Cthe_2973 3492514 - 3493215 + | sugar fermentation stimulation protein Cthe_2974 3494451 - 3493240 - | hypothetical protein TERM 3814 3493428 - 3493448 + g 80 -6.1 -4.67608 | GCTCGGCCATTGGTT CAACTCCGG AAT TCGGAATTG TTTTCTCTTCCGGTA TERM 3815 3493544 - 3493569 + g 73 -6.7 -4.14392 | overlap 3493545 3493559 3493560 GCCGGCTCAGGCTTT TCCGGCTCGGG CTTT TCCGGTCCGGG TTTTCCCGGTTCGGG TERM 3816 3493559 - 3493584 + g 86 -10.3 -4.09685 | overlap 3493545 3493544 3493560 3493574 TCCGGCTCGGGCTTT TCCGGTCCGGG TTTT CCCGGTTCGGG TTTTGCCGGGTCAGG TERM 3817 3493560 - 3493583 + g 81 -11.6 -3.05597 | overlap 3493545 3493544 3493559 3493574 CCGGCTCGGGCTTTT CCGGTCCGGG TTTT CCCGGTTCGG GTTTTGCCGGGTCAG TERM 3818 3493604 - 3493614 + g 72 -4.6 -4.66833 | GCCGGGTCAGGTTTT CCGG GTT CTGG TTTTTGCGGTTCGGG Cthe_2975 3495222 - 3494458 - | putative RNA polymerase sigma factor SigI Cthe_2976 3495257 - 3495496 + | hypothetical protein TERM 3819 3495531 - 3495498 - f 77 -8.5 -3.62591 | opp_overlap 3495503, overlap 3495503 GTGACAAGGCGTAAA TATAAGCTATATA AACACAAG TATATAGCTTATA AAATAAAAAACAAAA Cthe_2977 3495574 - 3496701 + | MAEBL, putative TERM 3820 3496742 - 3496776 + F 100 -10.2 -5.61913 | opp_overlap 3496734 3496742 GAATGAATAAGGAAA TTCCTTCTTGGTGT GAATCGA ACACTAAGGAGGAA TTTTTTATGTTTATT TERM 3821 3496961 - 3496933 - g 90 -5.3 -5.59879 | opp_overlap 3496936 3496939, overlap 3496934 3496936 GAGAAAGACAAAAAA GCAGAACAGAGAA CCG TCCCCTGTTCTAT GCTTCCTTTTTGGAG TERM 3822 3496960 - 3496934 - g 77 -8.8 -3.93487 | opp_overlap 3496936 3496939, overlap 3496933 3496936 AGAAAGACAAAAAAG CAGAACAGAGAA CCG TCCCCTGTTCTA TGCTTCCTTTTTGGA TERM 3823 3496958 - 3496936 - g 74 -9.2 -3.51847 | opp_overlap 3496936 3496939, overlap 3496934 3496933 AAAGACAAAAAAGCA GAACAGAGAA CCG TCCCCTGTTC TATGCTTCCTTTTTG Cthe_2978 3496891 - 3497598 + | Crp/FNR family transcriptional regulator TERM 3824 3497661 - 3497618 - f 83 -10.4 -2.98942 | opp_overlap 3497619, overlap 3497621 ACTTGGTTACATACA CCACCTTGGCTTTCTGATAA TCTT TTGTCAGAAGACCAAGGTGT TTTTTTAATGGAGGG TERM 3825 3497619 - 3497660 + F 100 -16.1 -5.52384 | opp_overlap 3497618 3497621 CTTGGTTACATACAC CACCTTGGCTTTCTGATAA TCTT TTGTCAGAAGACCAAGGTG TTTTTTTAATGGAGG TERM 3826 3497658 - 3497621 - f 80 -10.7 -2.72799 | opp_overlap 3497619, overlap 3497618 TGGTTACATACACCA CCTTGGCTTTCTGATAA TCTT TTGTCAGAAGACCAAGG TGTTTTTTTAATGGA Cthe_2979 3497683 - 3497880 + | 4Fe-4S ferredoxin, iron-sulfur binding Cthe_2980 3497915 - 3498505 + | hypothetical protein Cthe_2981 3499076 - 3498525 - | hypothetical protein TERM 3827 3498620 - 3498610 - G 77 -8.2 -4.1899 | opp_overlap 3498613 TGAGGCCAGCCAAAA GCCG CAC CGGC TAAAGCCATTGCCTT Cthe_2982 3499385 - 3500257 + | hypothetical protein TERM 3828 3500985 - 3500975 - g 89 -6.8 -5.35222 | opp_overlap 3500975 AAAATCTATAAAAAA GCTC TGC GAGC TTGTTGAAAAAATAT TERM 3829 3502011 - 3501990 - g 71 -5.1 -4.48903 | opp_overlap 3501990 GAAAATACAGCAAAA TCCCTTTCG GAAT CAATAGGGA AGTTTCTTGTGGACA Cthe_2983 3500382 - 3502037 + | methyl-accepting chemotaxis sensory transducer TERM 3830 3502066 - 3502105 + T 89 -10.9 -3.58269 | opp_overlap 3502065 TGTTTTTGAAGGCAG TCCCTTCGCAGGAAA TAAGTTAAGC TTTCTTGCGGAGGGA TTTGCACATAGGTTG Cthe_2985 3503812 - 3503462 - | hypothetical protein Cthe_2986 3504591 - 3503809 - | hypothetical protein TERM 3831 3503974 - 3503963 - G 76 -4.4 -5.03314 | TTCAGTTTTAAAAAA TCAG GTAT CTGA GCATATGCTGTCAGC TERM 3832 3504016 - 3504005 - G 70 -3 -5.13722 | CGCATTAAAACAAAA CATA TAAC TATG GGTGCTGCCAAGGTG Cthe_2987 3504977 - 3504585 - | hypothetical protein Cthe_2988 3505645 - 3505013 - | hypothetical protein TERM 3833 3507471 - 3507455 - g 71 -5.1 -4.52781 | overlap 3507449 CAAGGATAATGAAAA TTACAGC GAT GCAGTAA TGCTCAGGGAACTGG TERM 3834 3507576 - 3507625 + G 79 -9.5 -3.66356 | gap 1, opp_overlap 3507573 3507575 3507576 3507589 AATTATGGCAAATAC TTCCAGTTCAATACCGGAAACAAG CTG TTTGATTCCGG-ATTTAACAGGAA TTTGGCGTTCCAGGT Cthe_2989 3506208 - 3509162 + | glycosyltransferase 36 TERM 3835 3509242 - 3509206 - f 80 -9.6 -3.53224 | opp_overlap 3509211, overlap 3509211 TATTGGGTTGTTAAA GAAAACCTTGACCATA TGCGC TGTGGTCAAGGTTTTT TTCATAAAAACTAGT TERM 3836 3509237 - 3509211 - f 100 -9.5 -4.86731 | opp_overlap 3509211, overlap 3509206 GGTTGTTAAAGAAAA CCTTGACCATA TGCGC TGTGGTCAAGG TTTTTTTCATAAAAA TERM 3837 3509211 - 3509237 + F 100 -11.7 -5.52384 | opp_overlap 3509211 3509206 GGTTGTTAAAGAAAA CCTTGACCATA TGCGC TGTGGTCAAGG TTTTTTTCATAAAAA TERM 3838 3509736 - 3509760 + G 75 -10 -3.04144 | opp_overlap 3509739 AAGGCGTGTGTGAAG TGATTGCCGG CTATA CCGGCGGTCA TGTTGAAAATCCAAC Cthe_2990 3509627 - 3510223 + | peptide methionine sulfoxide reductase Cthe_2991 3510336 - 3512273 + | NADH:flavin oxidoreductase/NADH oxidase Cthe_2992 3512983 - 3513507 + | ECF subfamily RNA polymerase sigma-24 factor Cthe_2993 3513578 - 3514624 + | hypothetical protein TERM 3839 3514681 - 3514718 + F 75 -4.9 -5.08178 | gap 1 TTTAAACAAATTATT GAGGCGATAATCCGCTGA AGC TAAGGGGATTAA-GCCTC TTTTTCTATGTCTGT Cthe_2994 3515084 - 3517108 + | hypothetical protein Cthe_2995 3517259 - 3517471 + | hypothetical protein TERM 3840 3517447 - 3517487 + F 100 -10.6 -5.62219 | opp_overlap 3517459, overlap 3517451 GGATACTGTGACGGA TGGGGAGCTAAAGAGCTT TCATT AGGCTCTTTAGCTCTTTG TTTTTTTGATGTATT TERM 3841 3517451 - 3517483 + F 100 -15.8 -5.23943 | opp_overlap 3517459, overlap 3517447 ACTGTGACGGATGGG GAGCTAAAGAGCTT TCATT AGGCTCTTTAGCTC TTTGTTTTTTTGATG Cthe_2996 3517814 - 3518392 + | PfpI family intracellular peptidase TERM 3842 3518406 - 3518442 + F 100 -8.3 -6.11392 | gap 1, opp_overlap 3518406 AAAAGACGTTAAAAA TATGGAAGAAGC-TTG AACTGG CAATGTTTCTTCCATA TTTTTTTATTTGTTT TERM 3843 3518442 - 3518406 - f 76 -6.1 -4.69464 | gap 1, opp_overlap 3518406 AAAAGACGTTAAAAA TATGGAAGAAGC-TTG AACTGG CAATGTTTCTTCCATA TTTTTTTATTTGTTT TERM 3844 3518928 - 3518915 - g 100 -5.3 -5.95539 | TTCTAAAGAAAAAAA GGATA GTAT TATCC TGGAAGATTCTCAAT TERM 3845 3519441 - 3519426 - g 70 -3.3 -4.89339 | opp_overlap 3519426 AAGTACGGAGAAAAA GTATC ATTTGA GATAC GTTTTGATGACGAAC Cthe_2997 3518700 - 3519479 + | hypothetical protein Cthe_2998 3519775 - 3521502 + | ABC transporter related protein TERM 3846 3521524 - 3521507 - T 71 -7 -4.06384 | overlap 3521521 TCGGAATATGACAAA CCGGAT GAGGAA ATCCGG CAAACCGATAAAGCG TERM 3847 3521551 - 3521586 + T 70 -4.1 -4.9725 | AGCGGCCTTGTTTAA TGAACTGTACGTA TTTACAATGT TTCGTGCAGTTCA TTTTTATCTAAAGCT Cthe_2999 3522175 - 3521603 - | hypothetical protein TERM 3848 3522560 - 3522581 + G 75 -2.9 -5.25805 | overlap 3522561 GTCGATAAGTCCGCG TGCGGCTAT AGTG ATGGCAGCG TTTTTTGACTTTCTT Cthe_3000 3522402 - 3523454 + | phosphate transporter Cthe_3001 3523508 - 3524131 + | hypothetical protein TERM 3849 3524135 - 3524125 - f 70 -4 -4.93365 | CGTTATAATGAAAAA TTCT TAA AGAA AACTGTAAATATGTT Cthe_3002 3524369 - 3524917 + | hypothetical protein TERM 3850 3524994 - 3524969 - T 83 -4.6 -5.55769 | opp_overlap 3524972, overlap 3524970 3524972 TGTTATAATAAAAAA TGAGGACCGG TTTTAT CCGGTCCTTT TCTATTTTGCATGCC TERM 3851 3524993 - 3524970 - T 77 -8.1 -3.92377 | opp_overlap 3524972, overlap 3524969 3524972 GTTATAATAAAAAAT GAGGACCGG TTTTAT CCGGTCCTT TTCTATTTTGCATGC TERM 3852 3524991 - 3524972 - T 85 -10.7 -3.53281 | opp_overlap 3524972, overlap 3524970 3524969 TATAATAAAAAATGA GGACCGG TTTTAT CCGGTCC TTTTCTATTTTGCAT TERM 3853 3524972 - 3524991 + T 100 -10.7 -4.90471 | opp_overlap 3524972 3524970 3524969 TATAATAAAAAATGA GGACCGG TTTTAT CCGGTCC TTTTCTATTTTGCAT Cthe_3003 3526961 - 3525027 - | hydrogenase, Fe-only Cthe_3004 3528476 - 3526995 - | ferredoxin TERM 3854 3527358 - 3527368 + g 73 -6.8 -4.16016 | TTCCACCTCGTAGGG TGCC GCA GGCA TTTCTTCACGGGTAC TERM 3855 3529317 - 3529292 - g 74 -4 -5.10461 | overlap 3529294 GCCAGGTAATAAAAA TACCTGTAAC CAGCAT GTCACAGGTT CCGGCAACTTCTTCA TERM 3856 3529315 - 3529294 - g 73 -6.6 -4.17914 | overlap 3529292 CAGGTAATAAAAATA CCTGTAAC CAGCAT GTCACAGG TTCCGGCAACTTCTT TERM 3857 3529563 - 3529541 - g 76 -9.2 -3.68007 | overlap 3529539 GACAGAAATTAAAGA TACCGGTACA TAA TGTACCTGTA AAAAGCACTCCTGGT TERM 3858 3529840 - 3529820 - g 100 -11.9 -5.14645 | ATAACGGAAGAAAAA TTGCCGCCA GCA TGACGGCAA TGCCGCATGCGGGAA Cthe_3005 3528781 - 3530052 + | peptidoglycan-binding LysM TERM 3859 3530104 - 3530131 + T 90 -4.9 -5.72207 | overlap 3530105 AAATCCAAATTTTTA TGCAGGTTATA TTTAAT TATAGCCTGCC TTTTTTTAATTTCAG TERM 3860 3530105 - 3530130 + T 79 -8.4 -4.01698 | overlap 3530104 AATCCAAATTTTTAT GCAGGTTATA TTTAAT TATAGCCTGC CTTTTTTTAATTTCA Cthe_3006 3531016 - 3530147 - | ErfK/YbiS/YcfS/YnhG Cthe_3007 3531754 - 3531062 - | ErfK/YbiS/YcfS/YnhG TERM 3861 3531909 - 3531879 - R 84 -6.2 -5.2015 | opp_overlap 3531883 3531885, overlap 3531883 TGAAGAAGACAAAAA GAAAGCCGGAAGAA AGT TTTTTCCGACTTTT TGAGAATTTAAGCCA TERM 3862 3531905 - 3531883 - R 85 -7 -5.05037 | opp_overlap 3531883 3531885, overlap 3531879 GAAGACAAAAAGAAA GCCGGAAGAA AGT TTTTTCCGAC TTTTTGAGAATTTAA TERM 3863 3531883 - 3531905 + r 79 -7 -4.64657 | opp_overlap 3531883 3531879, overlap 3531885 GAAGACAAAAAGAAA GCCGGAAGAA AGT TTTTTCCGAC TTTTTGAGAATTTAA Cthe_3008 3532588 - 3531917 - | superoxide dismutase Cthe_3009 3533123 - 3532815 - | hypothetical protein Cthe_3010 3533273 - 3533815 + | hypothetical protein Cthe_3011 3534278 - 3534661 + | hypothetical protein TERM 3864 3534744 - 3534772 + F 72 -2.4 -5.32599 | gap 1, opp_overlap 3534742, overlap 3534745 AGAAAAATAAGTACG AGGCTGC-TCAGT TTCG GCTGATGTAGCCC TTTTTCTGTTTTATA TERM 3865 3536322 - 3536311 - g 70 -3 -5.04385 | TACAGGGTCAAAAAA TCTT AGGA AAGA ATCAGACATAAATGC Cthe_3012 3535136 - 3537028 + | carbohydrate-binding family 6 protein TERM 3866 3537066 - 3537096 + T 100 -17 -5.1615 | opp_overlap 3537066 CTCCCAAGTAAAAAA CCTCCGTCAGGA ACTTAAG TCCTGACGGAGG TTTTTTACGTCTTAC TERM 3867 3537096 - 3537066 - T 100 -17 -5.26875 | opp_overlap 3537066 CTCCCAAGTAAAAAA CCTCCGTCAGGA ACTTAAG TCCTGACGGAGG TTTTTTACGTCTTAC Cthe_3013 3538170 - 3537193 - | hydrogenase expression/formation protein HypE Cthe_3014 3539224 - 3538175 - | hydrogenase formation HypD protein TERM 3868 3539134 - 3539160 + g 80 -8 -4.36348 | opp_overlap 3539133, overlap 3539131 3539159 CGTTCTTAAAAATGC TGGAAGTGTGGG TGC CGCAGACTTCCA TTATTTTAATGTTTT TERM 3869 3539159 - 3539171 + g 71 -4.9 -4.63928 | opp_overlap 3539133, overlap 3539134 3539131 GGTGCCGCAGACTTC CATTA TTT TAATG TTTTTGCCCTCGTAT Cthe_3015 3539438 - 3539211 - | hydrogenase assembly chaperone hypC/hupF Cthe_3016 3541705 - 3539444 - | (NiFe) hydrogenase maturation protein HypF TERM 3870 3539691 - 3539724 + gr 80 -10.5 -2.7464 | gap 1, opp_overlap 3539691, overlap 3539690 3539693 CCCAATGCAAGAGAA CC-TGTGTCATCTTTG TTT TGAAGATGACACATGG ATTTAAGCATCGGTT TERM 3871 3539723 - 3539691 - GR 80 -9.3 -3.71686 | opp_overlap 3539691 3539690 3539693 CCCAATGCAAGAGAA CCTGTGTCATCTT TGTTTTG AAGATGACACATG GATTTAAGCATCGGT TERM 3872 3539693 - 3539721 + gr 87 -11.9 -2.64803 | opp_overlap 3539691, overlap 3539691 3539690 CAATGCAAGAGAACC TGTGTCATCTTTG TTT TGAAGATGACACA TGGATTTAAGCATCG TERM 3873 3540123 - 3540108 - GR 72 -9 -2.72511 | opp_overlap 3540100, overlap 3540107 GCCACTCTTTTAAAC TCTGCG CCTT CGCAGA TTAAAAATTCTCCGC TERM 3874 3541644 - 3541628 - GR 74 -7.9 -3.94811 | AATATTATGGACAAA GGGTCTG AAA CCGACCC CCTGAACTATTCCTG Cthe_3017 3542331 - 3541678 - | hydrogenase accessory protein HypB TERM 3875 3542227 - 3542238 + gr 75 -5.8 -4.70887 | overlap 3542220 ACCCATTACATTTAT GGCA TAGA TGCC TTTCTTTGTTAATGA Cthe_3018 3542685 - 3542347 - | hydrogenase expression/synthesis, HypA Cthe_3019 3543016 - 3542630 - | 4Fe-4S ferredoxin, iron-sulfur binding TERM 3876 3542924 - 3542936 + gr 77 -7.7 -4.08216 | GCCTCTTGAAGCAGG GAAGG GCT CCTTC TTTTCAAGCGGATAC Cthe_3020 3544315 - 3543236 - | ech hydrogenase subunit E TERM 3877 3543615 - 3543627 + g 93 -10.5 -4.95155 | TTTAATTTTCCGTAT GCGGC ATA GCCGC TTTTTCTCATGTCAA TERM 3878 3544263 - 3544277 + g 75 -10 -3.01712 | TCTAAATGTATGGGC TCCGGT AAA ACCGGA TGTTGAGGGCCGAAG Cthe_3021 3544667 - 3544308 - | ech hydrogenase subunit D Cthe_3022 3545178 - 3544741 - | ech hydrogenase subunit C Cthe_3023 3546063 - 3545188 - | ech hydrogenase subunit B Cthe_3024 3547970 - 3546060 - | ech hydrogenase subunit A TERM 3879 3547474 - 3547496 + g 71 -6.4 -4.14541 | opp_overlap 3547474 3547472 3547482, overlap 3547482 AAGAGAAAAATTACA GAAAAAAAGA AAC TCTTTCTTTC TTTGTATCCTTCGTG TERM 3880 3547492 - 3547482 - G 88 -4 -5.75478 | opp_overlap 3547482 3547474, overlap 3547474 3547472 AATTACAGAAAAAAA GAAA CTC TTTC TTTCTTTGTATCCTT TERM 3881 3547860 - 3547825 - G 79 -8.5 -4.11394 | gap 1 ATTCCATCCTTAAAA TACCGACATACC-ACA AATAA TGTCAGTATGCCGGTA ATAAAGGCGAAAATT TERM 3882 3548323 - 3548343 + G 93 -6.8 -5.45802 | opp_overlap 3548309 3548324, overlap 3548324 3548340 3548341 ACGGGTAATAGAAAA ACCACCTC CCGAA GAGGTGGC TTTTTATTTTAAAGG TERM 3883 3548342 - 3548324 - g 93 -11 -5.0916 | opp_overlap 3548323 3548324 3548340 3548341, overlap 3548309 CGGGTAATAGAAAAA CCACCTCC CGA AGAGGTGG CTTTTTATTTTAAAG TERM 3884 3548324 - 3548342 + G 84 -10.3 -3.86397 | opp_overlap 3548309 3548324, overlap 3548323 3548340 3548341 CGGGTAATAGAAAAA CCACCTC CCGAA GAGGTGG CTTTTTATTTTAAAG Cthe_3025 3548065 - 3548355 + | hypothetical protein Cthe_3026 3549146 - 3548664 - | GreA/GreB family elongation factor TERM 3885 3548802 - 3548786 - G 83 -9.3 -4.10657 | TTACATTTTTGAAAA GCAGGGC CCT GCCCAGC GGGGAAAGACATGAA TERM 3886 3548864 - 3548876 + g 71 -4.1 -4.93316 | opp_overlap 3548858 3548855 3548854, overlap 3548858 3548855 AAAAAGGAAGAACAA TGCGA TAT TTGCA TTTTTCCTCTTCTTC TERM 3887 3549245 - 3549199 - H 100 -15.5 -3.55323 | gap 1, opp_overlap 3549199 3549204 3549207, overlap 3549204 3549207 AAAAACTCCAGATAA TAGAATG-AGGCATTCCGCAAT ATCG ATTGCGGAACGCCTGCATTATA TATCATAACATAAAT TERM 3888 3549199 - 3549245 + H 100 -13.3 -2.79915 | gap 1, opp_overlap 3549199 3549204 3549207, overlap 3549204 3549207 AAAAACTCCAGATAA TAGAATG-AGGCATTCCGCAAT ATCG ATTGCGGAACGCCTGCATTATA TATCATAACATAAAT TERM 3889 3549240 - 3549204 - H 100 -15.4 -3.79874 | gap 1, opp_overlap 3549204 3549199 3549207, overlap 3549199 3549207 CTCCAGATAATAGAA TG-AGGCATTCCGCAAT ATCG ATTGCGGAACGCCTGCA TTATATATCATAACA TERM 3890 3549204 - 3549240 + H 100 -13.2 -3.61902 | gap 1, opp_overlap 3549199 3549204 3549207, overlap 3549199 3549207 CTCCAGATAATAGAA TG-AGGCATTCCGCAAT ATCG ATTGCGGAACGCCTGCA TTATATATCATAACA TERM 3891 3549207 - 3549236 + H 100 -15.1 -2.65145 | opp_overlap 3549204 3549199 3549207, overlap 3549204 3549199 CAGATAATAGAATGA GGCATTCCGCAAT ATCG ATTGCGGAACGCC TGCATTATATATCAT TERM 3892 3549236 - 3549207 - H 100 -17.3 -2.98062 | opp_overlap 3549207 3549204 3549199, overlap 3549204 3549199 CAGATAATAGAATGA GGCATTCCGCAAT ATCG ATTGCGGAACGCC TGCATTATATATCAT Cthe_3027 3549650 - 3551020 + | methylcitrate synthase TERM 3893 3551046 - 3551063 + T 100 -11.3 -5.11613 | opp_overlap 3551046 AAACGTATAAAAAAA GCCGCTA AAAT TAGCGGC TTTTTTAAATGATGT TERM 3894 3551063 - 3551046 - T 100 -11.3 -5.68039 | opp_overlap 3551046 AAACGTATAAAAAAA GCCGCTA AAAT TAGCGGC TTTTTTAAATGATGT Cthe_3028 3552316 - 3551120 - | histidine decarboxylase TERM 3895 3552004 - 3552016 + g 75 -7.7 -4.07868 | opp_overlap 3551994 TGTAACCCCAGGCTT CTTCC CAG GGAAG TTTGTATACATCTGC TERM 3896 3552734 - 3552748 + H 74 -5.8 -4.54727 | opp_overlap 3552734 TACATAAATAATAAA CAAAAT ATG ATTTTG TTTTGATTTGGCCGG TERM 3897 3552748 - 3552734 - H 74 -5.8 -4.65458 | opp_overlap 3552734 TACATAAATAATAAA CAAAAT ATG ATTTTG TTTTGATTTGGCCGG Cthe_3029 3552839 - 3553330 + | CheW protein TERM 3898 3554648 - 3554636 - g 76 -3.3 -5.26918 | opp_overlap 3554636 ATACGGCAGAAAAAA TAGCC CAG GGCGA TTTGTCGGATGACAG TERM 3899 3555144 - 3555134 - g 70 -5.4 -4.33203 | CAATAGAAGAAATAA CATC ATC GATG GAGCAGATAGCAGCC TERM 3900 3555497 - 3555485 - g 71 -6.3 -4.17516 | overlap 3555479 CCGAAATGATAGAAA GTTCT ATA AGAAC TGTGGAAACCGGAAC Cthe_3030 3553462 - 3555960 + | methyl-accepting chemotaxis sensory transducer Cthe_3031 3556108 - 3556380 + | hypothetical protein TERM 3901 3556462 - 3556435 - f 95 -10.7 -4.62783 | opp_overlap 3556435 CAGGTATTCCAAAAA TTGCAAGGAGA TAAAAG CCTCCTTGCAA TTTTTAATGCTTATT TERM 3902 3556435 - 3556462 + F 100 -10 -4.83593 | opp_overlap 3556435 CAGGTATTCCAAAAA TTGCAAGGAG ATAAAAGC CTCCTTGCAA TTTTTAATGCTTATT Cthe_3032 3556592 - 3557026 + | hypothetical protein TERM 3903 3557112 - 3557153 + F 100 -14.1 -4.33675 | opp_overlap 3557136 AATTTTGATTTTTGC GGCATTTCATTTTTATG TGGAAAGT CATGAAAATGAAATGCC TTTTAATAATATCCT TERM 3904 3557255 - 3557272 + G 70 -3.4 -5.00616 | overlap 3557244 TTTGCCGCCACATGC GGAAGT TGCGGT GCTTCC TTTTTTGGACCGGGG Cthe_3033 3557201 - 3557620 + | hypothetical protein Cthe_3034 3557731 - 3558072 + | hypothetical protein TERM 3905 3558093 - 3558117 + T 100 -8.6 -5.57729 | opp_overlap 3558087 3558093 TTGCAAAATTAAAAA CTCAGGGGTT GGCAA AGTCCCTGAG TTTTTTGTCTTATTT TERM 3906 3558117 - 3558093 - T 73 -4.3 -5.0925 | opp_overlap 3558093, overlap 3558087 TTGCAAAATTAAAAA CTCAGGG GTTGGCAAAGT CCCTGAG TTTTTTGTCTTATTT Cthe_3035 3559302 - 3558127 - | D-3-phosphoglycerate dehydrogenase TERM 3907 3560329 - 3560317 - g 77 -6.3 -4.53475 | overlap 3560321 AGGGGATAAAAACAA GATAG ATG CTATC ACATCTGCAACAGTC TERM 3908 3561089 - 3561078 - g 75 -3 -5.18866 | TTGAAATAAACAAAA TAAC CGAG GTTA TAAACAGCATAGCAG TERM 3909 3561536 - 3561513 - g 83 -11 -3.73859 | CAGCAGAAGAGATAA CTGCATCCGT TCAA ACGGAGGCAG AAAATGTGCGGCAGC Cthe_3036 3559919 - 3561631 + | methyl-accepting chemotaxis sensory transducer Cthe_3037 3561719 - 3562357 + | nitroreductase TERM 3910 3562381 - 3562421 + F 82 -7.7 -4.46531 | opp_overlap 3562384 3562389, overlap 3562383 3562389 CAGTGTAATAATTGC AAATAAAAGCTCATGGGTT GGA AACTCATGAGCTTTTAAAA TTTGATTTTTTGCTT TERM 3911 3562383 - 3562419 + F 100 -14.7 -2.5366 | opp_overlap 3562384 3562389, overlap 3562381 3562389 GTGTAATAATTGCAA ATAAAAGCTCATGGGTT GGA AACTCATGAGCTTTTAA AATTTGATTTTTTGC TERM 3912 3562418 - 3562384 - f 100 -16 -3.72051 | opp_overlap 3562383 3562381 3562389, overlap 3562389 TGTAATAATTGCAAA TAAAAGCTCATGGGTT GGA AACTCATGAGCTTTTA AAATTTGATTTTTTG TERM 3913 3562389 - 3562413 + F 100 -13.7 -4.25676 | opp_overlap 3562384 3562389, overlap 3562383 3562381 TAATTGCAAATAAAA GCTCATGGGTT GGA AACTCATGAGC TTTTAAAATTTGATT TERM 3914 3562413 - 3562389 - f 100 -11.5 -4.90525 | opp_overlap 3562389 3562383 3562381, overlap 3562384 TAATTGCAAATAAAA GCTCATGGGTT GGA AACTCATGAGC TTTTAAAATTTGATT TERM 3915 3562508 - 3562498 - f 72 -2.6 -5.42259 | opp_overlap 3562482 3562481, overlap 3562482 3562504 TTAGTTTTAAAAAAA TTAA AGT TTAA ATTAAAATAATTAAA TERM 3916 3563235 - 3563251 + G 79 -5.2 -5.1101 | GTTAAAGGTTATGGC TATGCA GGTAA TGCATA TTTTTTCAATCCTAC Cthe_3038 3562569 - 3563276 + | hypothetical protein TERM 3917 3563326 - 3563351 + F 100 -11.9 -4.28049 | opp_overlap 3563326 ACTGAGAACAAGAAA GCGGCATCACT TAAC GGTGATGTCGC TTTTAACCTTTTAAA TERM 3918 3563351 - 3563326 - f 89 -9 -4.52415 | opp_overlap 3563326 ACTGAGAACAAGAAA GCGGCATCAC TTAACG GTGATGTCGC TTTTAACCTTTTAAA TERM 3919 3565712 - 3565694 - g 85 -8.8 -4.40037 | AAATAATCAGCAAAA TCGACAGC CAC GCTGACGA ATCCCAGCCGGTTTT Cthe_3039 3563461 - 3565953 + | cell divisionFtsK/SpoIIIE Cthe_3040 3566034 - 3566468 + | hypothetical protein Cthe_3041 3566571 - 3567533 + | 1,4-dihydroxy-2-naphthoate octaprenyltransferase TERM 3920 3567594 - 3567624 + F 71 -7.8 -3.52539 | opp_overlap 3567601, overlap 3567583 3567582 3567594 3567594 TTACTTTAACTTGTA GTTAAACTTTAACT TAT AGTTGAACTTTAAC TTGTAATTAAACTTG Cthe_3042 3567896 - 3568717 + | hypothetical protein Cthe_3043 3568961 - 3569599 + | hypothetical protein Cthe_3044 3569729 - 3570478 + | hypothetical protein TERM 3921 3570518 - 3570551 + F 95 -9 -4.96762 | opp_overlap 3570518 AAAATCCTTAAAAAA GTTAAACGGGCT TAATAGCCGC GGCCCGTTTAAC TTTTTGTAATATATG TERM 3922 3570551 - 3570518 - f 91 -8.3 -5.08011 | opp_overlap 3570518 AAAATCCTTAAAAAA GTTAAACGGGC TTAATAGCCGCG GCCCGTTTAAC TTTTTGTAATATATG Cthe_3045 3570564 - 3571088 + | FHA domain-containing protein TERM 3923 3571943 - 3571927 - g 70 -8.7 -3.38768 | GGATATTACGGATAA GGGCTAC CAG ATAGCCC AGTCGTTGTTTGCCA TERM 3924 3572277 - 3572293 + G 71 -6.5 -4.2528 | overlap 3572270 TAAGTTACGGGGGGA GCTCCCT TGT AGCGAGC TTTATTGCCTTAGGA Cthe_3046 3571100 - 3572368 + | cell cycle protein Cthe_3047 3572361 - 3573773 + | peptidoglycan glycosyltransferase Cthe_3048 3573876 - 3574541 + | DNA repair protein RadC TERM 3925 3574791 - 3574764 - T 80 -9.2 -3.58329 | overlap 3574753 3574765 GAAATACCTTGGAAA CCTGCTGCAATC TTTC GACTGCAGCAAA CCTCCAGCATCAGAT TERM 3926 3574790 - 3574765 - T 80 -10.5 -2.74515 | overlap 3574764 3574753 AAATACCTTGGAAAC CTGCTGCAATC TTTC GACTGCAGCAA ACCTCCAGCATCAGA Cthe_3049 3576978 - 3575203 - | TPR repeat-containing protein TERM 3927 3575397 - 3575407 + g 70 -3.2 -4.91109 | AGACTCTTTGGATGT TGTC TTG GGCA TTTTTATAGTCAGGA TERM 3928 3576407 - 3576423 + g 77 -5.1 -5.00616 | overlap 3576404 3576408 GATTTGTTACATGCT TCCAAGG CTT CTTTGGG TTTTTTGAGCCACAC Cthe_3050 3577303 - 3579306 + | fibronectin, type III TERM 3929 3580042 - 3580054 + G 73 -7.7 -3.90586 | opp_overlap 3580042 3580041 GAGTGGCAGAAAAGG CCTCT GGG AGAGG TTTATCCGATAGTAT Cthe_3051 3579553 - 3580776 + | transposase, mutator type TERM 3930 3580823 - 3580782 - f 73 -8.2 -3.49777 | opp_overlap 3580777 3580783 3580784, overlap 3580786 GCGTATATAGTATAA TCA-AGGGGTTCAGGGAAAC TCTG GTTTCC-TGAACCCCCCTGT AATATTTTATACGCA TERM 3931 3580783 - 3580822 + F 83 -10.8 -2.98387 | gap 1, opp_overlap 3580782 3580786, overlap 3580777 3580784 CGTATATAGTATAAT CA-AGGGGTTCAGGGAAAC TCT GGTTTCCTGAACCCCCCTG TAATATTTTATACGC TERM 3932 3580784 - 3580820 + F 81 -10.1 -3.03972 | opp_overlap 3580782 3580786, overlap 3580783 3580777 GTATATAGTATAATC AAGGGGTTCAGGGAAAC TCT GGTTTCCTGAACCCCCC TGTAATATTTTATAC TERM 3933 3580818 - 3580786 - f 100 -15.8 -3.49182 | gap 1, opp_overlap 3580784 3580783 3580777, overlap 3580782 ATATAGTATAATCAA GGGGTTCAGGGAAAC TCTG GTTTCC-TGAACCCC CCTGTAATATTTTAT TERM 3934 3580867 - 3580886 + F 83 -8 -4.26188 | opp_overlap 3580870, overlap 3580856 ATTTTTCTTTTGTAA GAATTTCT TATC AGAAATTC TTTTGAATCTATAAA TERM 3935 3581995 - 3581974 - g 74 -5.1 -4.66388 | AAAACCATAAAGAAA TTACCCCGC CTTA GCAGAGCAA AGAGTTCCTTTGGGG TERM 3936 3582661 - 3582632 - g 95 -14.3 -3.2614 | overlap 3582639 TAGTGTTTAGATCAA CCGGAAACGGCAA ATAT CTGCCGCCTCCGG GAATATATGACGAAC TERM 3937 3588199 - 3588171 - g 71 -7.3 -3.84406 | overlap 3588186 TGGTTACGACAACAA CGGCAACCAGACA AGC TGCTCGGATGCCG GAACAGTAAATGAAT Cthe_3052 3581242 - 3590070 + | YD repeat-containing protein Cthe_3053 3590070 - 3590627 + | hypothetical protein TERM 3938 3590637 - 3590663 + F 80 -5.2 -5.27206 | gap 1, opp_overlap 3590637, overlap 3590631 ATTTAATTGGTGAAA GGTCACA-CAG TTTCGT CTGATGTGGCC TTTTTCTTATCTATG Cthe_3054 3590741 - 3591130 + | hypothetical protein TERM 3939 3591312 - 3591354 + F 100 -15.8 -4.27117 | opp_overlap 3591316 CGAATGACTCACCTA TAGAGCCTGGCGGATAGTCT TAA AAACTATTTGTCAGGCTCTA TTTATGTTCTCGGAG Cthe_3055 3591342 - 3591626 + | hypothetical protein Cthe_3056 3591687 - 3593117 + | transposase, IS204/IS1001/IS1096/IS1165 Cthe_3057 3593198 - 3593467 + | transposase TERM 3940 3593902 - 3593915 + T 74 -5.3 -4.91109 | overlap 3593892 GAGTCCCAATTTTTT GGTAT CATG ATACC TTTTTATCCTGCGGC Cthe_3058 3594385 - 3593906 - | hypothetical protein TERM 3941 3594892 - 3594879 - g 72 -3.1 -5.04082 | CAAAGAATAATAAAA GAACA GAAG TGTCC ACCGGAAGTATTGTA TERM 3942 3594961 - 3594951 - g 89 -4.6 -5.62288 | overlap 3594953 TCAATAAAAGAAAAA GGCC TTC AGCC TCAAGGACGACAATA Cthe_3059 3594609 - 3595157 + | phosphotransferase KptA/Tpt1 Cthe_3060 3595368 - 3595622 + | hypothetical protein Cthe_3061 3595650 - 3596096 + | CopY family transcriptional regulator TERM 3943 3596195 - 3596185 - f 72 -2.6 -5.45726 | GACACGGCAAAAAAA TAAA AAA TTTA ACAAAAACCTATTGC TERM 3944 3596487 - 3596507 + G 72 -8.3 -3.61517 | opp_overlap 3596485 3596487, overlap 3596489 CAAAATTGGACAACA TTTCAAGCC TTG GGCTTGATA TTATTGAAACCAAAT TERM 3945 3596507 - 3596487 - g 70 -8.3 -3.27721 | opp_overlap 3596487 3596489, overlap 3596485 CAAAATTGGACAACA TTTCAAGCC TTG GGCTTGATA TTATTGAAACCAAAT TERM 3946 3596489 - 3596505 + G 80 -10.9 -3.38812 | opp_overlap 3596487 3596485, overlap 3596487 AAATTGGACAACATT TCAAGCC TTG GGCTTGA TATTATTGAAACCAA Cthe_3062 3596342 - 3597724 + | signal transduction histidine kinase regulating citrate/malate metabolism TERM 3947 3597903 - 3597886 - g 90 -4.9 -5.65513 | overlap 3597888 GAGGAATTAAAAAAA TATAAGC CTGC GCTTACA AAACAGAAAGATTTT Cthe_3063 3597844 - 3598806 + | Acetyl xylan esterase TERM 3948 3599238 - 3599213 - f 71 -5.3 -4.67038 | overlap 3599215 GTGCTAAAATGAAAA TCCGCGCTGAG GGAA CGAAGCGCGAA AGTTATGAAAGAAGC TERM 3949 3599531 - 3599516 - f 77 -9 -3.32819 | CATACAGGGGGATAA CACAGG GAAA CCTGTG CTAATACCGCATAAT TERM 3950 3599777 - 3599751 - f 89 -10.8 -3.57561 | GCGCAATGGGGGAAA CCCTGACGCAGC AAC GCCGCGTGAAGG AAGAAGGCCTTCGGG TERM 3951 3600882 - 3600896 + F 71 -8.6 -2.83715 | GTGCGGCTGGATCAC CTCCTT TCT AAGGAG TATAATGATACTACG TERM 3952 3601468 - 3601445 - f 75 -8.2 -3.66803 | overlap 3601438 GCGGAAGAGCCCAAA CCGAGCTATA GCAA TATAGTTCGG GGTTGCGGACCGGCA TERM 3953 3601526 - 3601509 - f 76 -8.5 -3.4178 | overlap 3601522 ACGAGCTTAGCAGAA GTAAGCT GGAA AGCTTAC ACCATAGAGGGTGAA TERM 3954 3601707 - 3601696 - f 76 -7.2 -4.2354 | GAAAGGTGAAAAGAA CCCC GGGA GGGG AGTGAAAGAGAACCT TERM 3955 3604322 - 3604290 - f 83 -10.6 -3.12327 | opp_overlap 3604291 3604295, overlap 3604295 CTGCCAGATTTAATA TCAAAGCCTTACGG TTGTT CCGTAGGGCTTTGT TTTATTTCAAGGAAC TERM 3956 3604291 - 3604321 + F 100 -16.3 -4.86731 | opp_overlap 3604290 3604295, overlap 3604295 TGCCAGATTTAATAT CAAAGCCTTACGG TTGTT CCGTAGGGCTTTG TTTTATTTCAAGGAA TERM 3957 3604317 - 3604295 - f 81 -9.1 -3.94184 | opp_overlap 3604291 3604295, overlap 3604290 AGATTTAATATCAAA GCCTTACGG TTGTT CCGTAGGGC TTTGTTTTATTTCAA TERM 3958 3604295 - 3604317 + F 100 -11.3 -4.96996 | opp_overlap 3604295 3604290, overlap 3604291 AGATTTAATATCAAA GCCTTACGG TTGTT CCGTAGGGC TTTGTTTTATTTCAA TERM 3959 3604862 - 3604878 + G 79 -5.1 -5.0133 | overlap 3604865 TCCTTGCAATAGCGG CATTGTC TCC GACACTG TTTTTTACCGCCCTG TERM 3960 3605382 - 3605396 + G 72 -9.2 -3.27525 | AGTTTCGGCTCTTGC GGCGGC GGT GCTGCC TTCCATTTCGGGAGC TERM 3961 3605861 - 3605823 - g 78 -3.8 -5.18409 | opp_overlap 3605833, overlap 3605825 3605827 3605828 GAAAATAAAAATAAA TATACTGAAACAGGCGGT AAA ACCGGCTGTTTCATCAGT GGTAATGGGTATTTT TERM 3962 3605859 - 3605825 - g 90 -10.8 -4.15156 | opp_overlap 3605833, overlap 3605823 3605827 3605828 AAATAAAAATAAATA TACTGAAACAGGCGGT AAA ACCGGCTGTTTCATCA GTGGTAATGGGTATT TERM 3963 3605857 - 3605827 - g 88 -11.2 -3.6123 | opp_overlap 3605833, overlap 3605825 3605823 3605828 ATAAAAATAAATATA CTGAAACAGGCGGT AAA ACCGGCTGTTTCAT CAGTGGTAATGGGTA TERM 3964 3605856 - 3605828 - g 95 -14.7 -2.74298 | opp_overlap 3605833, overlap 3605827 3605825 3605823 TAAAAATAAATATAC TGAAACAGGCGGT AAA ACCGGCTGTTTCA TCAGTGGTAATGGGT TERM 3965 3605833 - 3605851 + G 73 -8.8 -3.77196 | opp_overlap 3605828 3605827 3605825 3605823 ATAAATATACTGAAA CAGGCGGT AAA ACCGGCTG TTTCATCAGTGGTAA Cthe_3064 3604489 - 3606096 + | polysaccharide biosynthesis protein TERM 3966 3606935 - 3606910 - g 73 -5.5 -4.63486 | gap 1, overlap 3606931 ATGCCGCGAAGAAAA CTGTATTTGACG AAT CG-CAAAGACAG AATGGAATTGACCTT TERM 3967 3607105 - 3607090 - g 71 -6.2 -4.15833 | overlap 3607095 AGCATGATTTTAAAA TTGAAC TTGT GTTCAA GGTCTACAACATAAA Cthe_3065 3606318 - 3607559 + | hypothetical protein TERM 3968 3607593 - 3607635 + F 93 -9.9 -4.18983 | opp_overlap 3607602, overlap 3607597 3607602 AATATTTTAAGGATT TATTTGAAACTGGCAGCGG CTTTT CCGCTGTCGGTTTCGTAAA TTATTGTTTATATCG TERM 3969 3607597 - 3607631 + F 100 -15.1 -2.74293 | opp_overlap 3607602, overlap 3607593 3607602 TTTTAAGGATTTATT TGAAACTGGCAGCGG CTTTT CCGCTGTCGGTTTCG TAAATTATTGTTTAT TERM 3970 3607602 - 3607626 + F 95 -11.4 -3.81929 | opp_overlap 3607602, overlap 3607597 3607593 AGGATTTATTTGAAA CTGGCAGCGG CTTTT CCGCTGTCGG TTTCGTAAATTATTG Cthe_3066 3607660 - 3608385 + | ABC transporter related protein TERM 3971 3608892 - 3608905 + G 77 -5.3 -4.94222 | ATGTTTTAAGAAGCG GAACA GGGG TGTTC TTTTTATCAATTGTT Cthe_3067 3608372 - 3609124 + | membrane spanning protein TERM 3972 3609188 - 3609231 + G 76 -2.4 -5.40873 | opp_overlap 3609198, overlap 3609190 3609199 CTTATTTTTTCGAAT GCTGCAATTATTGTTATTCC TCTT GGGATAACATTTGTGGCATC TTTTATTTTTATGTT TERM 3973 3609199 - 3609220 + G 73 -8.1 -3.94276 | opp_overlap 3609198, overlap 3609190 3609188 GAATGCTGCAATTAT TGTTATTCC TCTT GGGATAACA TTTGTGGCATCTTTT TERM 3974 3609932 - 3609918 - g 74 -4.3 -4.95758 | opp_overlap 3609918, overlap 3609912 ATGAGAGCAGAAAAA TGCTT TTTTC AAGCA TATCTCACGATCTTA TERM 3975 3610206 - 3610176 - g 76 -9.2 -3.76402 | overlap 3610178 ATTGCATGTATGAAA TAGATATTGAACTT GAA AAGTCCAATATCAA GGTTGAGCTTCATAA TERM 3976 3610204 - 3610178 - g 89 -11.8 -3.46647 | overlap 3610176 TGCATGTATGAAATA GATATTGAACTT GAA AAGTCCAATATC AAGGTTGAGCTTCAT Cthe_3068 3609155 - 3610594 + | periplasmic sensor signal transduction histidine kinase Cthe_3069 3610612 - 3611304 + | two component transcriptional regulator TERM 3977 3611327 - 3611314 - f 70 -3.9 -5.05116 | GCATAAAGAAGAAAA TCTTA GCAA TAAGA TGTGAATAATTTTAC Cthe_3070 3611453 - 3612043 + | hypothetical protein TERM 3978 3612316 - 3612297 - f 77 -8 -3.80746 | overlap 3612295 CTTTTAAAAATAATA TTGTAGTT TGTT AACTACAA CTACAAATCCGGGAG Cthe_3071 3612340 - 3612516 + | hypothetical protein TERM 3979 3612556 - 3612603 + T 81 -10.7 -2.84684 | opp_overlap 3612556, overlap 3612556 3612556 TAAGTTTATTTATAA TTTGTTGCCTGC-CGGCAAGGTT GTTG GACCTCGCCGTGCAGGCT-CAAA AATTTTTATTTGCAA TERM 3980 3612556 - 3612605 + T 83 -5.8 -5.27335 | gap 2, opp_overlap 3612556, overlap 3612556 3612556 TAAGTTTATTTATAA TTTGT-TGCCTGC-CGGCAAGGTT GTTG GACCTCGCCGTGCAGGCTCAAAAA TTTTTATTTGCAAAC TERM 3981 3612603 - 3612556 - T 90 -12.2 -3.36803 | opp_overlap 3612556 3612556 3612556 TAAGTTTATTTATAA TTTGTTGCCTGC-CGGCAAGGT TGTTGG ACCTCGCCGTGCAGGCT-CAAA AATTTTTATTTGCAA TERM 3982 3612556 - 3612604 + T 70 -7.4 -3.75678 | gap 1, opp_overlap 3612556, overlap 3612556 3612556 TAAGTTTATTTATAA TTTGTTGCCTGC-CGGCAAGGTT GTTG GACCTCGCCGTGCAGGCTCAAAA ATTTTTATTTGCAAA TERM 3983 3612749 - 3612764 + T 80 -7.6 -4.28548 | GTAGTAAGATATTTA TCGAAC ATAT GTTCGA TTTTAATAAATACAT TERM 3984 3612889 - 3612917 + T 100 -13.3 -4.68506 | opp_overlap 3612889 TACCTAACTATACAA GGGTTGAGTAC GAAAACG GTACTCAACCC TTTTTGGCATTGATT TERM 3985 3612917 - 3612889 - T 100 -13.3 -3.60661 | opp_overlap 3612889 TACCTAACTATACAA GGGTTGAGTAC GAAAACG GTACTCAACCC TTTTTGGCATTGATT Cthe_3072 3613743 - 3612982 - | acyl-ACP thioesterase Cthe_3073 3613910 - 3614581 + | HAD family hydrolase TERM 3986 3615410 - 3615400 - gf 78 -2.6 -5.47218 | CTGGATTGAAAAAAA TATT GTG AATA AAAACAAAACGTGGA Cthe_3074 3614597 - 3615517 + | Cof-like hydrolase TERM 3987 3615984 - 3615971 - gf 73 -6.7 -4.14392 | GTGGAATCCGGAAAA CAAGC TTAT GCTTG TAGGACTTCAGACAA TERM 3988 3616020 - 3616004 - gf 78 -2.9 -5.37043 | overlap 3616019 ACTTCAGACAAAAAA GCTCTCC ACG GAACAGC TGCCTCCAAGCAACC TERM 3989 3616026 - 3616038 + GF 70 -3.3 -4.9218 | opp_overlap 3616019 ACGGAACAGCTGCCT CCAAG CAA CCTGG TTTTTCTGATAGATG Cthe_3075 3615489 - 3617099 + | von Willebrand factor, type A TERM 3990 3617142 - 3617167 + F 80 -5.4 -5.14563 | opp_overlap 3617142 AATCAATATGAAAAA CTGCCTCGAG AGCCAA TTAGAGGCAG TTTTTTCATGGACAA TERM 3991 3617167 - 3617142 - f 72 -4.7 -4.90136 | opp_overlap 3617142 AATCAATATGAAAAA CTGCCTCGA GAGCCAAT TAGAGGCAG TTTTTTCATGGACAA TERM 3992 3617598 - 3617588 - g 70 -3.2 -4.98531 | overlap 3617581 TTGTGAAAGGAAAAA GGAA GTT TCCC GTTTGGATAAATATT Cthe_3076 3617293 - 3618585 + | radical SAM family protein TERM 3993 3619440 - 3619459 + F 70 -7.2 -3.64192 | opp_overlap 3619440 TTGGTTTGTATATAA GGTATTTG ATTT CAAATGCC TTTAGAGATCTTTTT TERM 3994 3620868 - 3620858 - g 73 -5.4 -4.62302 | overlap 3620846 GAACATTTGTAAAAA TGAG TTC CTCA ACAAATAACGCAGAC TERM 3995 3621645 - 3621618 - g 70 -7.8 -3.73224 | TGACGGTGGAGTAAA TGTTGGAGATAC AACA GTACCTACAACA CCTACAACACCTGTA TERM 3996 3624114 - 3624087 - g 70 -7.8 -3.73224 | TGACGGTGGAGTAAA TGTTGGAGATAC AACA GTACCTACAACA TCGCCGACAACAACA Cthe_3077 3619516 - 3625077 + | cellulosome anchoring protein, cohesin region TERM 3997 3625079 - 3625132 + F 100 -7.5 -5.88197 | opp_overlap 3625087, overlap 3625082 3625085 ACGACGCACAGTAAA TATTAAAATTGGGAGGAAGGATACC CCCC GGTATCCTTCCTCTCAAAAATATTC TTTTTTTATATTTGA TERM 3998 3625082 - 3625129 + F 100 -13.6 -4.94703 | opp_overlap 3625087, overlap 3625079 3625085 ACGCACAGTAAATAT TAAAATTGGGAGGAAGGATACC CCCC GGTATCCTTCCTCTCAAAAATA TTCTTTTTTTATATT TERM 3999 3625085 - 3625126 + F 100 -15.3 -3.00071 | opp_overlap 3625087, overlap 3625082 3625079 CACAGTAAATATTAA AATTGGGAGGAAGGATACC CCCC GGTATCCTTCCTCTCAAAA ATATTCTTTTTTTAT TERM 4000 3625124 - 3625087 - f 100 -20.1 -4.51363 | opp_overlap 3625085 3625082 3625079 CAGTAAATATTAAAA TTGGGAGGAAGGATACC CCCC GGTATCCTTCCTCTCAA AAATATTCTTTTTTT TERM 4001 3629975 - 3629949 - g 70 -9.5 -2.55896 | gap 1, overlap 3629933 3629948 CTGACGAACCAACAC CGTCAGACGAGC CAAC GC-CATCTGACG AACCGACACCGTCTG TERM 4002 3630140 - 3630114 - g 70 -9.5 -2.55896 | gap 1, overlap 3630098 3630113 CTGACGAACCAACAC CGTCAGACGAGC CAAC GC-CATCTGACG AACCGACACCGTCTG TERM 4003 3631079 - 3631053 - g 70 -9.5 -2.55896 | gap 1, overlap 3631037 3631052 CTGACGAACCAACAC CGTCAGACGAGC CAAC GC-CATCTGACG AACCGACACCGTCTG TERM 4004 3631244 - 3631218 - g 70 -9.5 -2.55896 | gap 1, overlap 3631202 3631217 CTGACGAACCAACAC CGTCAGACGAGC CAAC GC-CATCTGACG AACCGACACCGTCTG TERM 4005 3631732 - 3631706 - g 71 -7.5 -3.91084 | gap 1 GCATGGGCAATCAAA TTTGCAACAAGC CAGG GCTTGTT-CAAA GGATATCCGGACGGT Cthe_3078 3625229 - 3632170 + | cellulosome anchoring protein, cohesin region TERM 4006 3632206 - 3632236 + F 100 -9 -5.56264 | opp_overlap 3632206 AATGATATGTCAAAA GCTGTTGCGTTTAG TTC TTTGACGCAGCAGC TTTTTTATATTTGAA TERM 4007 3633069 - 3633054 - g 74 -6.2 -4.40184 | TCAATTAAATATAAA GTATGA TCCG TCATAC CTCCAGGCAGTTAAT Cthe_3079 3632842 - 3634908 + | cellulosome anchoring protein, cohesin region Cthe_3080 3634961 - 3636304 + | cellulosome anchoring protein, cohesin region TERM 4008 3636365 - 3636334 - T 100 -16 -5.36441 | opp_overlap 3636330, overlap 3636336 GCCGTAGATAAAAAA GAGGCTCAGAAAGC GTTG GCTTTCTGAGCCTT AAAACTTGTTGGGTT TERM 4009 3636363 - 3636336 - T 100 -18.6 -4.31943 | opp_overlap 3636330, overlap 3636334 CGTAGATAAAAAAGA GGCTCAGAAAGC GTTG GCTTTCTGAGCC TTAAAACTTGTTGGG Cthe_3081 3637243 - 3636401 - | transglutaminase-like protein TERM 4010 3636800 - 3636822 + g 87 -5 -5.37865 | TTTGGCGTCTTTGGT TAATTCCTTT GCC AAAGCAATTA TTTTTTCATTATTGC TERM 4011 3637096 - 3637116 + g 74 -4.7 -5.00616 | overlap 3637098 CGGCTAATGTAATTT TTCCTTCAA CAG TTGACGGGA TTTTTTGGAGAGAGA TERM 4012 3637216 - 3637233 + g 81 -2.8 -5.53991 | TAGTTAAGATGAGCA TAGTAA TACTGC TTACTA TTTTTTTCATAAATC TERM 4013 3637482 - 3637445 - H 100 -11.6 -5.06816 | gap 1, opp_overlap 3637450, overlap 3637450 AGGTGTTAAGAAAAA TTAA-AGCTCTGTCTGG GTATA CCAAACAGAGCTATTAA GACCAAAGTGACCTT TERM 4014 3637450 - 3637476 + H 84 -10.9 -3.01791 | opp_overlap 3637445 3637450 TTAAGAAAAATTAAA GCTCTGTCTGG GTATA CCAAACAGAGC TATTAAGACCAAAGT TERM 4015 3637476 - 3637450 - H 100 -13.1 -4.43037 | opp_overlap 3637450, overlap 3637445 TTAAGAAAAATTAAA GCTCTGTCTGG GTATA CCAAACAGAGC TATTAAGACCAAAGT Cthe_3082 3637818 - 3638063 + | hypothetical protein TERM 4016 3638356 - 3638340 - g 91 -10.9 -4.4648 | opp_overlap 3638338 ATTCCCAGGAGAAAA GAGGGTT GGA AACCCTC GATGAGTTTGTAAGG Cthe_3083 3638222 - 3638503 + | hypothetical protein Cthe_3084 3639636 - 3638500 - | putative RNA methylase TERM 4017 3638808 - 3638824 + g 72 -3.6 -5.08255 | overlap 3638810 CAATACAATCATCGA CTCCTG CGAGA CAGGCG TTTTCTTTTGCCAGT TERM 4018 3639718 - 3639708 - R 71 -3.2 -5.22137 | AAGCACAAAACAAAA CCTG AAC CAAG CTTAGGATTACCGAT Cthe_3085 3640681 - 3639755 - | response regulator receiver protein Cthe_3086 3640895 - 3642166 + | 3-phosphoshikimate 1-carboxyvinyltransferase Cthe_3087 3642314 - 3643123 + | response regulator receiver protein TERM 4019 3643138 - 3643169 + T 100 -13.2 -2.74256 | opp_overlap 3643144, overlap 3643144 AATTGCCTGATTAAT CTAAAAGACCTGTC GTAC GACAGGTCTTTTAA TGATATAATTTAATT TERM 4020 3643144 - 3643163 + T 100 -12.2 -4.33675 | opp_overlap 3643144, overlap 3643138 CTGATTAATCTAAAA GACCTGTC GTAC GACAGGTC TTTTAATGATATAAT TERM 4021 3643163 - 3643144 - T 100 -12.2 -4.30014 | opp_overlap 3643138 3643144 CTGATTAATCTAAAA GACCTGTC GTAC GACAGGTC TTTTAATGATATAAT Cthe_3089 3644041 - 3643649 - | hypothetical protein TERM 4022 3644278 - 3644298 + H 76 -5.5 -5.00895 | overlap 3644290 TGATTTATCTTTATT CCTGTTT ACAGTCA AAACAGG TTTTTGTATACTAGA TERM 4023 3644965 - 3644989 + G 71 -6.6 -4.08216 | gap 1, opp_overlap 3644964 3644965 GGAACCATGGAAAAG GCGGCTTTTTT GGCC AAAAAAG-CGC TTTTGAGGCCGATAG Cthe_3090 3644371 - 3645213 + | fumarate hydratase Cthe_3091 3645244 - 3645801 + | tartrate/fumarate subfamily Fe-S type hydro-lyase beta subunit Cthe_3092 3645937 - 3646143 + | hypothetical protein TERM 4024 3646210 - 3646249 + F 91 -12.6 -3.42229 | gap 1, opp_overlap 3646220, overlap 3646210 3646220 GGATGAAAGCAATCC G-GCAAAAAAATAAGACAT TTA ATGTCTTATTTTTTTGTGC CTTTTATCTTCATAT TERM 4025 3646210 - 3646250 + F 93 -10.2 -4.7219 | gap 2, opp_overlap 3646220, overlap 3646210 3646220 GGATGAAAGCAATCC GGCA-AAAAAA-TAAGACAT TTA ATGTCTTATTTTTTTGTGCC TTTTATCTTCATATA TERM 4026 3646238 - 3646220 - f 100 -9 -5.41746 | opp_overlap 3646210 3646210 3646220 AATCCGGCAAAAAAA TAAGACAT TTA ATGTCTTA TTTTTTTGTGCCTTT TERM 4027 3646220 - 3646238 + F 100 -9 -5.68039 | opp_overlap 3646220, overlap 3646210 3646210 AATCCGGCAAAAAAA TAAGACAT TTA ATGTCTTA TTTTTTTGTGCCTTT Cthe_3093 3646611 - 3647885 + | adenylosuccinate synthetase TERM 4028 3647920 - 3647939 + T 87 -8.6 -4.18018 | opp_overlap 3647920 TGCAGGCACTCAAAA CTGCTCAG GTTC TTGAGCAG TTTTGGGTAGCCGGG TERM 4029 3647939 - 3647920 - T 80 -7.9 -4.19817 | opp_overlap 3647920 TGCAGGCACTCAAAA CTGCTCA GGTTCT TGAGCAG TTTTGGGTAGCCGGG TERM 4030 3648179 - 3648233 + T 100 -15.3 -3.01712 | opp_overlap 3648184 3648189 3648221 3648232, overlap 3648189 GCGGATGGCTCACCA GGTAATAAAAGGAAGCTTATGACGC AGAAG GTGTCATAAGATTCCTTTTAAAACC TCTTAAAAGGCGGAA TERM 4031 3648228 - 3648184 - T 100 -14.6 -3.09516 | opp_overlap 3648179 3648189, overlap 3648189 3648221 TGGCTCACCAGGTAA TAAAAGGAAGCTTATGACGC AGAAG GTGTCATAAGATTCCTTTTA AAACCTCTTAAAAGG TERM 4032 3648223 - 3648189 - T 93 -10.1 -4.69053 | opp_overlap 3648179 3648189, overlap 3648184 3648221 CACCAGGTAATAAAA GGAAGCTTATGACGC AGAAG GTGTCATAAGATTCC TTTTAAAACCTCTTA TERM 4033 3648189 - 3648223 + T 100 -12.3 -4.11371 | opp_overlap 3648189 3648184 3648221, overlap 3648179 CACCAGGTAATAAAA GGAAGCTTATGACGC AGAAG GTGTCATAAGATTCC TTTTAAAACCTCTTA TERM 4034 3648795 - 3648827 + T 100 -15.1 -4.77216 | opp_overlap 3648797 3648802, overlap 3648797 3648802 CATCTCCCTCCACCA GACAAAAGCGAGTAT AAA ATACTCGCTTTTGTG TTTTTAACTGTTATT TERM 4035 3648797 - 3648825 + T 100 -17.7 -3.98606 | opp_overlap 3648797 3648802, overlap 3648795 3648802 TCTCCCTCCACCAGA CAAAAGCGAGTAT AAA ATACTCGCTTTTG TGTTTTTAACTGTTA TERM 4036 3648825 - 3648797 - T 100 -17.7 -2.78384 | opp_overlap 3648797 3648795 3648802, overlap 3648802 TCTCCCTCCACCAGA CAAAAGCGAGTAT AAA ATACTCGCTTTTG TGTTTTTAACTGTTA TERM 4037 3648820 - 3648802 - T 100 -11.8 -4.57353 | opp_overlap 3648797 3648795 3648802, overlap 3648797 CTCCACCAGACAAAA GCGAGTAT AAA ATACTCGC TTTTGTGTTTTTAAC TERM 4038 3648802 - 3648820 + T 100 -11.8 -4.98672 | opp_overlap 3648802 3648797, overlap 3648797 3648795 CTCCACCAGACAAAA GCGAGTAT AAA ATACTCGC TTTTGTGTTTTTAAC TERM 4039 3648863 - 3648915 + T 100 -24.5 -4.731 | opp_overlap 3648863 3648864 3648865, overlap 3648865 3648866 TTATCCAAAAACAAA TTCCCCCTGAATAAAAGCTGAGAAC ACT GTTCTCAGCTTTTATTCAGGGGATG TTTTATTGGTGGCTT TERM 4040 3648915 - 3648863 - T 100 -24.5 -4.89063 | opp_overlap 3648863 3648865 3648866, overlap 3648864 3648865 TTATCCAAAAACAAA TTCCCCCTGAATAAAAGCTGAGAAC ACT GTTCTCAGCTTTTATTCAGGGGATG TTTTATTGGTGGCTT TERM 4041 3648914 - 3648864 - T 100 -28 -3.52353 | opp_overlap 3648863 3648865 3648866, overlap 3648863 3648865 TATCCAAAAACAAAT TCCCCCTGAATAAAAGCTGAGAAC ACT GTTCTCAGCTTTTATTCAGGGGAT GTTTTATTGGTGGCT TERM 4042 3648865 - 3648913 + T 100 -29.3 -3.97413 | opp_overlap 3648864 3648863 3648865, overlap 3648863 3648866 ATCCAAAAACAAATT CCCCCTGAATAAAAGCTGAGAAC ACT GTTCTCAGCTTTTATTCAGGGGA TGTTTTATTGGTGGC TERM 4043 3648913 - 3648865 - T 100 -31.5 -2.70327 | opp_overlap 3648865 3648863 3648866, overlap 3648864 3648863 ATCCAAAAACAAATT CCCCCTGAATAAAAGCTGAGAAC ACT GTTCTCAGCTTTTATTCAGGGGA TGTTTTATTGGTGGC TERM 4044 3648866 - 3648912 + T 100 -32.8 -2.97725 | opp_overlap 3648865 3648864 3648863, overlap 3648865 3648863 TCCAAAAACAAATTC CCCCTGAATAAAAGCTGAGAAC ACT GTTCTCAGCTTTTATTCAGGGG ATGTTTTATTGGTGG Cthe_3094 3649981 - 3649007 - | glycosyl transferase family protein Cthe_3095 3652912 - 3650006 - | glycosyl transferase family protein TERM 4045 3652170 - 3652197 + g 74 -4.8 -4.78848 | overlap 3652165 3652194 GCCGGCTTGTCGGTC TGCGCCGCTTTG GCGT TAAAGCCGGGCA TTTTGTCTTTAAAGA TERM 4046 3653009 - 3652951 - R 93 -8.7 -4.84529 | opp_overlap 3652959 3652965 3652973, overlap 3652943 3652953 3652959 TCATAAATTTAAAAA TATTTA-AACATAAATGCAGAAAGGCTGA TAA TCAGGCTTT-TGCATTTATGTTGTCAACA ATGTTATTTTTTCTT TERM 4047 3653007 - 3652953 - R 85 -9.1 -4.03043 | opp_overlap 3652959 3652965 3652973, overlap 3652943 3652951 3652959 ATAAATTTAAAAATA TTTA-AACATAAATGCAGAAAGGCTGA TAA TCAGGCTTT-TGCATTTATGTTGTCAA CAATGTTATTTTTTC TERM 4048 3653000 - 3652959 - R 100 -14.1 -3.88464 | gap 1, opp_overlap 3652959 3652965 3652973, overlap 3652953 3652951 TTAAAAATATTTAAA CATAAATGCAGAAAGGCTGA TAA TCAGGCTTT-TGCATTTATG TTGTCAACAATGTTA TERM 4049 3652959 - 3653000 + r 100 -14.1 -3.31248 | gap 1, opp_overlap 3652959 3652953 3652951, overlap 3652965 3652973 TTAAAAATATTTAAA CATAAATGCAGAAAGGCTGA TAA TCAGGCTTT-TGCATTTATG TTGTCAACAATGTTA TERM 4050 3652965 - 3652994 + r 76 -7.3 -4.27117 | gap 1, opp_overlap 3652959 3652953 3652951, overlap 3652959 3652973 ATATTTAAACATAAA TGCAGAAAGGCTGA TAA TCAGGCTTT-TGCA TTTATGTTGTCAACA Cthe_3096 3654046 - 3653111 - | hypothetical protein Cthe_3097 3655158 - 3654193 - | glycosyl transferase family protein TERM 4051 3654914 - 3654930 + g 72 -9.3 -3.34192 | opp_overlap 3654890 3654927 TGGGCGGCTTCCAAC GCCGCAC AAA GAGCGGC TTCCTTGCCGAAATT Cthe_3098 3655637 - 3655287 - | hypothetical protein Cthe_3099 3656349 - 3655651 - | glycosyl transferase family protein TERM 4052 3655772 - 3655796 + g 78 -2.8 -5.43866 | overlap 3655765 3655764 TTATACATTTCCACC GGAAGTTCTG CAATT CTGAAATTCC TTTTTTTGAGCCTTA TERM 4053 3656285 - 3656296 + g 89 -4.4 -5.56673 | overlap 3656280 ATTTTAAGTTTTATT CGTT GGAT AACG TTTTTTATTGTGGCT Cthe_3100 3656550 - 3657392 + | diaminopimelate epimerase Cthe_3101 3657482 - 3658714 + | L,L-diaminopimelate aminotransferase TERM 4054 3658917 - 3658898 - g 73 -9.4 -3.16218 | overlap 3658896 TACAAGGAATATACA CTCTTTTG CTTG CAAAAGAG AAATACAATGGAACA TERM 4055 3659119 - 3659105 - g 79 -5 -5.13722 | opp_overlap 3659105 CTGATGAAAACAAAA TGAACA TAT TGTCCA TTGCTAGGGATACCC Cthe_3102 3658825 - 3659760 + | cell envelope-related transcriptional attenuator TERM 4056 3659785 - 3659801 + F 81 -4.4 -5.33785 | opp_overlap 3659785 AGTGAATTTTAAAAA TCAGCT GAAAA GGCTGA TTTTTTGTAGTCATT Cthe_3103 3659904 - 3660890 + | 2-hydroxyglutaryl-CoA dehydratase, D-component Cthe_3104 3660960 - 3661730 + | putative CoA-substrate-specific enzyme activase Cthe_3105 3662022 - 3662690 + | exsB protein Cthe_3106 3662722 - 3663105 + | putative 6-pyruvoyl tetrahydropterin synthase Cthe_3107 3663131 - 3663763 + | radical SAM family protein Cthe_3108 3663769 - 3664338 + | phage SPO1 DNA polymerase-related protein TERM 4057 3664451 - 3664468 + G 85 -8.5 -4.43844 | opp_overlap 3664451 3664448 3664462 TCCGGGGAAAGATGA GGTTTTG AAAT CAAAACC TTTTGTAGGTGCTGC Cthe_3109 3664317 - 3664895 + | uracil-DNA glycosylase superfamily protein TERM 4058 3665316 - 3665298 - f 80 -6 -5.02476 | ATACCTTTTAAAAAA GTCTTGAC AAA GTAAAGAC AGCATGATAACATAT TERM 4059 3665654 - 3665639 - f 77 -9 -3.32819 | CATACAGGGGGATAA CACAGG GAAA CCTGTG CTAATACCGCATAAC TERM 4060 3665900 - 3665874 - f 89 -10.8 -3.57561 | GCGCAATGGGGGAAA CCCTGACGCAGC AAC GCCGCGTGAAGG AAGAAGGCCTTCGGG TERM 4061 3667005 - 3667019 + F 71 -8.6 -2.83715 | GTGCGGCTGGATCAC CTCCTT TCT AAGGAG TATAATGATACTACG TERM 4062 3667205 - 3667218 + F 70 -8.1 -3.01791 | CACCAGTTCGGGATA CAGGC GATA GCCTG TGTTCCGAAAAAGAT TERM 4063 3667692 - 3667669 - f 75 -8.2 -3.66803 | overlap 3667662 GCGGAAGAGCCCAAA CCGAGCTATA GCAA TATAGTTCGG GGTTGCGGACCGGCA TERM 4064 3667750 - 3667733 - f 76 -8.5 -3.4178 | overlap 3667746 ACGAGCTTAGCAGAA GTAAGCT GGAA AGCTTAC ACCATAGAGGGTGAA TERM 4065 3667931 - 3667920 - f 76 -7.2 -4.2354 | GAAAGGTGAAAAGAA CCCC GGGA GGGG AGTGAAAGAGAACCT TERM 4066 3670599 - 3670637 + F 100 -13.5 -4.86731 | opp_overlap 3670599 3670604, overlap 3670604 GGAGCCATATACATA CAAAATAGCTTAAACCT AGGGA AGGTTTAAGCTATTTTA TTTTATTTGAAAAAG TERM 4067 3670637 - 3670599 - f 100 -15.7 -3.05993 | opp_overlap 3670599 3670604, overlap 3670604 GGAGCCATATACATA CAAAATAGCTTAAACCT AGGGA AGGTTTAAGCTATTTTA TTTTATTTGAAAAAG TERM 4068 3670632 - 3670604 - f 100 -13.4 -4.6645 | opp_overlap 3670604 3670599, overlap 3670599 CATATACATACAAAA TAGCTTAAACCT AGGGA AGGTTTAAGCTA TTTTATTTTATTTGA TERM 4069 3670604 - 3670632 + F 100 -13.4 -5.34857 | opp_overlap 3670599 3670604, overlap 3670599 CATATACATACAAAA TAGCTTAAACCT AGGGA AGGTTTAAGCTA TTTTATTTTATTTGA TERM 4070 3670740 - 3670726 - f 77 -8.5 -3.69323 | CCATTATTATTCAAA GCCGG ATTGG CCGGC CTCATGATGTATTTT TERM 4071 3670939 - 3670929 - f 74 -4 -5.3104 | TTATGAAAAATAAAA TTAC AAG GTAA GGGCAGGTATGGTAT Cthe_3110 3670953 - 3671717 + | UBA/THIF-type NAD/FAD binding fold TERM 4072 3671745 - 3671763 + F 100 -6.7 -6.02919 | opp_overlap 3671745 GGTTAAATAAAAAAA TTCCGGT ATTTA GCCGGAA TTTTTTTATTTCTGA TERM 4073 3671763 - 3671745 - f 100 -6 -5.95539 | opp_overlap 3671745 GGTTAAATAAAAAAA TTCCGG TATTTAG CCGGAA TTTTTTTATTTCTGA Cthe_3111 3671905 - 3672384 + | hypothetical protein TERM 4074 3672535 - 3672500 - f 76 -8.6 -3.41795 | gap 1, opp_overlap 3672499 3672498, overlap 3672502 AAATGTTCATTAGAA TATTATTAGCACTCATT TAC AGTGAGTGCTAATAA-A GCGTTTTAAAATTCC TERM 4075 3672534 - 3672502 - f 100 -13.7 -3.27653 | opp_overlap 3672499 3672498, overlap 3672500 ATGTTCATTAGAATA TTATTAGCACTCATT TAC AGTGAGTGCTAATAA AGCGTTTTAAAATTC TERM 4076 3672820 - 3672803 - g 79 -7 -4.65895 | opp_overlap 3672795 3672794 CCTTTCAGCCAAAAA TTGGCC TTATGC GGCCAA CACGGTATTTAATCC Cthe_3112 3672702 - 3673694 + | glycosidase, PH1107-related Cthe_3113 3673753 - 3674802 + | nucleotidyl transferase Cthe_3114 3674971 - 3676146 + | glycosyl transferase, group 1 Cthe_3115 3676143 - 3677156 + | hypothetical protein TERM 4077 3677938 - 3677950 + G 74 -4.8 -4.66535 | opp_overlap 3677938 CTTCATGTGAATAAA GCAC TGGAT GTGC TTTCTTTTCAAAATT Cthe_3116 3677281 - 3678372 + | mannose-6-phosphate isomerase, class I TERM 4078 3678375 - 3678392 + F 91 -2.1 -6.67286 | overlap 3678386 AGTTGTAATATGAAA TTTTTTG CATA TAAAAAA TTTTTTTTTTGTTTA TERM 4079 3678807 - 3678823 + G 70 -7.9 -3.76586 | opp_overlap 3678806, overlap 3678806 TGCGCATAACGAATC GCTGGAC AAA GTCCTGC TGTTTGTGTTTGCAA Cthe_3117 3678493 - 3679248 + | zinc/iron permease TERM 4080 3679306 - 3679318 + F 76 -3.5 -5.51402 | TGTAATTAAATTCGA TATAT TTA ATATA TTTTTTTGGATATAT TERM 4081 3679660 - 3679638 - g 74 -6.2 -4.37886 | GTATTGGGTACAAAA GGCTGCTTTC CCA GAAAGTTGCC CACGAAGATTTTATA Cthe_3118 3679418 - 3679807 + | hemerythrin-like metal-binding protein Cthe_3119 3679832 - 3680494 + | flavin reductase-like, FMN-binding TERM 4082 3680653 - 3680669 + G 71 -6.5 -4.14472 | GGAAATCAGGCGGCT GCGTATG CAT CTTACGC TTTTACGGATGTTGC TERM 4083 3681620 - 3681607 - g 86 -9.5 -4.03811 | GACAGGACTAAAGAA CCCGG AGCA CCGGG AGAGCCTTTGTACCT TERM 4084 3682395 - 3682373 - g 72 -3.4 -5.16572 | ATTCAATTGAAAAAA CTTACGGC AAAAAAG GCCACAAG ATAGTTGAGATGAAC Cthe_3120 3680605 - 3684141 + | pyruvate flavodoxin/ferredoxin oxidoreductase-like protein TERM 4085 3684191 - 3684158 - T 100 -16.1 -4.21462 | opp_overlap 3684158 AGGTAGCATGCAAAA GGGCTGCTGCACTAA GAAA TTGGTGCAACAGCCC TTTTTGTCAGTCTTG TERM 4086 3684158 - 3684191 + T 100 -16.1 -4.91459 | opp_overlap 3684158 AGGTAGCATGCAAAA GGGCTGCTGCACTAA GAAA TTGGTGCAACAGCCC TTTTTGTCAGTCTTG Cthe_3121 3684406 - 3684239 - | hypothetical protein TERM 4087 3684306 - 3684316 + g 95 -4.6 -5.80951 | CTGGGAATGGGAACC CCTG ACT CGGG TTTTTTCTTTTCGAT TERM 4088 3684549 - 3684561 + H 76 -3.4 -5.4588 | CTTTTTTTCCGGTGT GAGA TTTCT TCTC TTTTTTATAGTTTTA Cthe_3122 3684732 - 3686810 + | S-layer-like domain-containing protein TERM 4089 3687492 - 3687458 - g 70 -5.8 -4.46854 | ATAGAAAAGTTAAAA GAAGATAAAATTGTCG TAT CAGCAATTGTACCTTC CGGTTATGAGTCATT Cthe_3123 3686834 - 3690736 + | von Willebrand factor, type A TERM 4090 3690751 - 3690802 + F 79 -4.9 -5.28983 | gap 2, opp_overlap 3690756, overlap 3690756 AAACTATTGTGGAAC TA-AAATAAGAGAGCACT-TAAC TAAAAACT GTGATAGTGCTCTCTTATTTGTA TTTTTATATTTTCCG TERM 4091 3690796 - 3690756 - f 74 -6.4 -4.41047 | gap 1, opp_overlap 3690751 3690756 ATTGTGGAACTAAAA TAAGAGAGCACT-TAAC TAAAAACT GTGATAGTGCTCTCTTA TTTGTATTTTTATAT TERM 4092 3690756 - 3690796 + F 76 -6.4 -4.62163 | gap 1, opp_overlap 3690756, overlap 3690751 ATTGTGGAACTAAAA TAAGAGAGCACT-TAAC TAAAAACT GTGATAGTGCTCTCTTA TTTGTATTTTTATAT TERM 4093 3691172 - 3691159 - g 74 -5.3 -4.72272 | GTTTTTGACGAAAAA GCAAA TCGG TTTGC AAATCTCTTGATTAA Cthe_3124 3690976 - 3692613 + | AMP-dependent synthetase and ligase TERM 4094 3692678 - 3692712 + F 100 -13.7 -4.07133 | overlap 3692671 3692681 TTCATTATTCATTCG GAATGGCTTTGGCCG ATTTG TGGGCAAAGCCATTC TTGTTTCTGAAAATG TERM 4095 3692681 - 3692709 + F 90 -9.6 -4.15703 | overlap 3692671 3692678 ATTATTCATTCGGAA TGGCTTTGGCCG ATTTG TGGGCAAAGCCA TTCTTGTTTCTGAAA TERM 4096 3693196 - 3693171 - g 83 -6.2 -5.06016 | opp_overlap 3693171 3693173 AGTAGATAAAGAAAA CATCACTGTT GAAGTT AACGGTGATG TACTTACAATAAGTG Cthe_3125 3692962 - 3693411 + | heat shock protein Hsp20 TERM 4097 3693450 - 3693470 + F 88 -6.1 -5.46698 | TAATGAAATGATACG GCTCCCT TATGCAC GGGGAGC TTTTTTGATTTTAAA Cthe_3126 3693630 - 3694541 + | NUDIX hydrolase Cthe_3127 3694668 - 3696056 + | peptidase M56, BlaR1 TERM 4098 3696099 - 3696131 + F 70 -4.2 -4.96646 | gap 1, opp_overlap 3696109 TCAAATTGTTTGTAT GCAGG-ATAAAGCCA CATT TAGCTTTAGACCTGC TTTTTCATTATCTGG Cthe_3128 3696535 - 3697872 + | iron-sulfur flavoprotein Cthe_3129 3697945 - 3699057 + | citrate transporter Cthe_3130 3699228 - 3699962 + | hypothetical protein TERM 4099 3700366 - 3700339 - g 79 -3.2 -5.47821 | ATTGAGCCAAAAAAA GGGCAGGTGGAC ATTG ATCCTCCGGACC TTAAAGAGTCTTTGC Cthe_3131 3700138 - 3701835 + | von Willebrand factor, type A TERM 4100 3701894 - 3701862 - f 100 -14.4 -4.56597 | gap 1, opp_overlap 3701862 TGTTCTTGTGAAAAA TTTGGCATAG-CCGT TGAG ACGGGCTATGCCAAA TTTTTTATTTTTTCT TERM 4101 3701862 - 3701894 + F 100 -14.4 -6.07374 | gap 1, opp_overlap 3701862 TGTTCTTGTGAAAAA TTTGGCATAG-CCGT TGAG ACGGGCTATGCCAAA TTTTTTATTTTTTCT TERM 4102 3702580 - 3702566 - g 79 -8.6 -4.03978 | opp_overlap 3702562 AATCTTGCATATAAA GGAACT TCA AGTTCC AGTATTGCATACGGT Cthe_3132 3702140 - 3703375 + | cellulosome enzyme, dockerin type I Cthe_3133 3703460 - 3704269 + | alpha/beta hydrolase fold Cthe_3134 3704309 - 3704509 + | hypothetical protein TERM 4103 3704536 - 3704574 + F 93 -8.9 -4.89339 | opp_overlap 3704531 3704536 ATTGAAAGACGAAAA TCTCCTTCCTGGCAA GAATCATAA TAGCCGGGGAGGAGA TTTTTATGGATAGTT Cthe_3135 3704683 - 3705015 + | hypothetical protein TERM 4104 3705199 - 3705209 + T 75 -2.4 -5.58454 | CAGAATGAATTTTTG CGGC AGA GCCC TTTTTTTAATCTAAA TERM 4105 3705300 - 3705254 - T 100 -13.4 -5.75478 | opp_overlap 3705251 3705254 AAGTACATAAAAAAA TTGTCAATTTATTCGAAGTC ATAAATA GAATCCGAATAAATTGACAA TAATTATGTTATTTG TERM 4106 3705254 - 3705300 + T 84 -11.2 -3.00785 | opp_overlap 3705254, overlap 3705251 AAGTACATAAAAAAA TTGTCAATTTATTCGAAGTC ATAAATA GAATCCGAATAAATTGACAA TAATTATGTTATTTG Cthe_3136 3706471 - 3705344 - | peptidase S8 and S53, subtilisin, kexin, sedolisin TERM 4107 3705862 - 3705852 - G 70 -5.4 -4.37658 | AAGTCCGGTAGAAAA TCCA CAC TGGA TAAAATCAAATCTTT Cthe_3137 3707161 - 3706577 - | hypothetical protein TERM 4108 3707354 - 3707319 - R 73 -8.4 -3.44672 | opp_overlap 3707331, overlap 3707320 3707331 3707333 TTTGATGAAAACATA CGGATATAAAAAGAGG ATAC CCCCTTTTTGTATCCC CCAATTTAGAGTCAA TERM 4109 3707353 - 3707320 - R 87 -11.9 -2.66321 | opp_overlap 3707331, overlap 3707319 3707331 3707333 TTGATGAAAACATAC GGATATAAAAAGAGG ATAC CCCCTTTTTGTATCC CCCAATTTAGAGTCA TERM 4110 3707341 - 3707331 - R 73 -4.6 -4.99638 | opp_overlap 3707331, overlap 3707320 3707319 3707333 ATACGGATATAAAAA GAGG ATA CCCC CTTTTTGTATCCCCC Cthe_3138 3707658 - 3707383 - | hypothetical protein TERM 4111 3707964 - 3707940 - R 79 -8.8 -3.86916 | opp_overlap 3707940 GATTATTATATTAAA GTAAAACTAA TATGT TTAGTTTTAC TTGATAAAATCGAAT TERM 4112 3707940 - 3707964 + r 72 -8.8 -3.16683 | opp_overlap 3707940 GATTATTATATTAAA GTAAAACTAA TATGT TTAGTTTTAC TTGATAAAATCGAAT Cthe_3139 3708641 - 3708081 - | hypothetical protein Cthe_3140 3709306 - 3708668 - | TetR family transcriptional regulator TERM 4113 3709331 - 3709377 + H 89 -11.9 -3.26722 | opp_overlap 3709362 3709364, overlap 3709362 CCTTTCAGAGGACGG TGACCACGTGGTCATAT CCCTGCTTATATT ATATGACCATGTGGTCA TATTGTCAATGTACC TERM 4114 3709362 - 3709379 + H 76 -8.5 -3.39803 | opp_overlap 3709362 3709364, overlap 3709331 TCCCTGCTTATATTA TATGACC ATGT GGTCATA TTGTCAATGTACCTG TERM 4115 3709449 - 3709411 - H 77 -9.1 -3.1945 | gap 2, overlap 3709410 ATTGAATGAATAAAG GTTTCTTTCTGCCTTGGAA AAT TTCC--GGCCGAAAGAAAC TATGAAAAAAGCTGT Cthe_3141 3709573 - 3712068 + | lipolytic enzyme, G-D-S-L TERM 4116 3712182 - 3712169 - f 70 -3.9 -5.11937 | overlap 3712160 AACAAGTGTAAAAAA TTTCT ACAA AGAAA AACTTTTATTTCGAA TERM 4117 3712482 - 3712532 + G 79 -11.2 -2.70932 | AGTACAATGTCAAGG CTGTTTGTGCATCAGGCACTGC AAGAACA GCTGAGCCTGATGAAGAAACAG TCATTGCAAGGAACA Cthe_3142 3712286 - 3712774 + | hypothetical protein TERM 4118 3712831 - 3712790 - T 100 -7.9 -5.56264 | gap 1, opp_overlap 3712788 3712791, overlap 3712791 TTGAAATATAAAAAA TGCCCGCCCTGG-TACGG TTTAATG CCGAAACCAGGGTGGGCT GAATTTACTGGAACA TERM 4119 3712830 - 3712791 - T 95 -11.4 -3.92132 | gap 1, opp_overlap 3712791 3712788, overlap 3712790 TGAAATATAAAAAAT GCCCGCCCTGG-TACGG TTTAATG CCGAAACCAGGGTGGGC TGAATTTACTGGAAC TERM 4120 3712791 - 3712830 + T 100 -14.3 -2.67803 | gap 1, opp_overlap 3712790 3712791, overlap 3712788 TGAAATATAAAAAAT GCCCGCCCTGG-TACGGT TTAAT GCCGAAACCAGGGTGGGC TGAATTTACTGGAAC Cthe_3143 3713186 - 3712836 - | hypothetical protein Cthe_3144 3714126 - 3713395 - | AraC family transcriptional regulator Cthe_3145 3714353 - 3714715 + | transcriptional regulator Cthe_3146 3714718 - 3716904 + | peptidase M56, BlaR1 TERM 4121 3716974 - 3717016 + F 77 -4.3 -5.2189 | gap 1, overlap 3716978 ATTAATTTACGACTT TATACCCTTGACGTG-TGTT TTTT GACAACATATCAAGGGTTTA TTTTTTGCTAATTAC TERM 4122 3716978 - 3717012 + F 75 -5.1 -5.0917 | gap 1, overlap 3716974 ATTTACGACTTTATA CCCTTGACGTG-TGTT TTTT GACAACATATCAAGGG TTTATTTTTTGCTAA TERM 4123 3717223 - 3717264 + F 71 -3.1 -5.14563 | opp_overlap 3717224, overlap 3717224 ATAAATGCGAAAAAA CGAGTAGTGTTTGTCATGA AACT TGATGATGAACAATACTCA TTTTTTAATGGAGGG TERM 4124 3718783 - 3718764 - g 70 -3.6 -5.00616 | overlap 3718765 GCGCTTCTGAAAAAA CCCAAAAT ATTG ATTCTGGA TGATTCCACCAGTGC Cthe_3147 3717291 - 3719036 + | ABC transporter related protein TERM 4125 3719098 - 3719113 + G 74 -9 -3.45514 | overlap 3719094 ATATTGGAGTTTTAC CCGGTA ATGT TACCGG TTGCTATTGTGTGTA TERM 4126 3719502 - 3719517 + G 76 -7.6 -4.2231 | TTTATTGTCCGGTAT TACGGT TCTT ACCGTA TTTTCCATCATGGTT TERM 4127 3720628 - 3720612 - g 82 -10.9 -3.60818 | opp_overlap 3720613, overlap 3720604 3720603 TGAAAACGGGGCAAA TCTGTCC CAG GGACAGA GACAGTTGATTTCCA Cthe_3148 3719026 - 3720924 + | ABC transporter related protein Cthe_3149 3721116 - 3722546 + | aminoacyl-histidine dipeptidase TERM 4128 3723083 - 3723093 + G 72 -4.6 -4.81814 | AGAAACGAAAGAATT GCCG GAG TGGC TTTTGTTCTGGTAAT Cthe_3150 3722858 - 3723913 + | adenosylcobinamide-phosphate synthase TERM 4129 3723968 - 3723992 + F 95 -9.2 -5.06103 | AATGTAAAGGCTGAA GCACCTTGGG TATTT CCCGTGGTGC TTTTTTAAAAGTTGT cobU 3724061 - 3724624 + | adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase cobS 3724640 - 3725386 + | cobalamin synthase Cthe_3153 3725428 - 3726018 + | alpha-ribazole phosphatase Cthe_3154 3726159 - 3726710 + | hypothetical protein Cthe_3155 3726851 - 3727585 + | beta-lactamase-like protein TERM 4130 3727760 - 3727794 + T 79 -7.2 -4.41348 | opp_overlap 3727763, overlap 3727761 3727763 3727766 AAATATTATAAATTA AAAGAAGAGATTGGGT TTT GCTCAATCTCTTCTCA TTTATTTGGAGCAAA TERM 4131 3727761 - 3727793 + T 83 -10.7 -3.24488 | opp_overlap 3727763, overlap 3727760 3727763 3727766 AATATTATAAATTAA AAGAAGAGATTGGGT TTT GCTCAATCTCTTCTC ATTTATTTGGAGCAA TERM 4132 3727763 - 3727791 + T 100 -13.3 -3.18452 | opp_overlap 3727763, overlap 3727761 3727760 3727766 TATTATAAATTAAAA GAAGAGATTGGGT TTT GCTCAATCTCTTC TCATTTATTTGGAGC TERM 4133 3727791 - 3727763 - T 95 -10.4 -4.63479 | opp_overlap 3727763 3727761 3727760 3727766 TATTATAAATTAAAA GAAGAGATTGGG TTTTG CTCAATCTCTTC TCATTTATTTGGAGC TERM 4134 3727766 - 3727788 + T 80 -9.2 -3.72242 | opp_overlap 3727763, overlap 3727763 3727761 3727760 TATAAATTAAAAGAA GAGATTGGGT TTT GCTCAATCTC TTCTCATTTATTTGG TERM 4135 3727799 - 3727809 + T 77 -4 -5.35224 | ATCTCTTCTCATTTA TTTG GAG CAAA TTTTGTTTTTATACC Cthe_3156 3729068 - 3727818 - | methyl-accepting chemotaxis sensory transducer TERM 4136 3728776 - 3728744 - G 88 -11.5 -3.47349 | opp_overlap 3728752, overlap 3728748 TGTGGAAATCCATAA TCAATGACCTGATAT CTG ACATCAGTTCATTGA AAACCACTGCAGAAG TERM 4137 3729558 - 3729546 - g 88 -9.1 -4.614 | TTCAATCACAGAAAA GTGCC TAT GGCAC CTCCGGACGAGATAT TERM 4138 3730574 - 3730590 + G 70 -8.7 -3.2827 | opp_overlap 3730568 3730573 TGCAATTAACCAGAC TTCCGGT CTT GCCGGAA TTGCTCATTGGATAA Cthe_3157 3729405 - 3730784 + | pyruvate carboxyltransferase TERM 4139 3731290 - 3731315 + G 70 -9.9 -2.52464 | CCAAAGTATGCAGGG TGGTTTTAAAG GGAG CTTTAAAGCCA TGGGTTACCGCCAAG TERM 4140 3731914 - 3731928 + G 71 -7.1 -3.90291 | opp_overlap 3731903, overlap 3731909 GAATGGGACAGGCTC CGGCA ACCGA TGCCG TTTCCTTGAGAACCT Cthe_3158 3730815 - 3732743 + | aconitate hydratase Cthe_3159 3732792 - 3733463 + | GntR family transcriptional regulator TERM 4141 3733470 - 3733523 + F 83 -10.5 -3.29043 | overlap 3733473 AAAGGTTAGAAAACG GGGTCAGGCTTGATGAGTTCACA TTCAAAGT TGTGGATTTGTCAAGCCTGAATC TTGTAAAAAGGAGTT TERM 4142 3733473 - 3733520 + F 95 -13 -2.52623 | overlap 3733470 GGTTAGAAAACGGGG TCAGGCTTGATGAGTTCACA TTCAAAGT TGTGGATTTGTCAAGCCTGA ATCTTGTAAAAAGGA Cthe_3160 3733544 - 3734914 + | NOL1/NOP2/sun family RNA methylase Cthe_3161 3735044 - 3735778 + | ribosomal small subunit pseudouridine synthase A TERM 4143 3736583 - 3736561 - g 70 -2.6 -5.055 | TGAAGCGTCAAAAAA GATTGCCCAA AAC CTTGGCTATC GAAATATGGAGTTTA Cthe_3162 3735872 - 3737041 + | SAM dependent methyltransferase Cthe_3163 3737452 - 3737943 + | carbohydrate-binding family 25 protein TERM 4144 3738062 - 3738044 - f 91 -7.4 -5.23396 | opp_overlap 3738045, overlap 3738045 AATAATCAATAAAAA GGAGGCTT GAG AAGCCTCT TTTTTGCATAAAATC TERM 4145 3738045 - 3738061 + F 100 -10.9 -5.09225 | opp_overlap 3738044 3738045 ATAATCAATAAAAAG GAGGCTT GAG AAGCCTC TTTTTTGCATAAAAT TERM 4146 3738061 - 3738045 - f 89 -10.9 -3.71597 | opp_overlap 3738045, overlap 3738044 ATAATCAATAAAAAG GAGGCTT GAG AAGCCTC TTTTTTGCATAAAAT Cthe_3164 3738385 - 3740019 + | two component AraC family transcriptional regulator Cthe_3165 3740168 - 3741316 + | PpiC-type peptidyl-prolyl cis-trans isomerase Cthe_3166 3741555 - 3742835 + | glucose-1-phosphate adenylyltransferase Cthe_3167 3742832 - 3743953 + | glucose-1-phosphate adenylyltransferase, GlgD subunit TERM 4147 3744392 - 3744402 + G 74 -4.6 -4.92363 | TTTTTTGAGCTCTTG CGCC GGA GGTG TTTTTGTGGATGTTT Cthe_3168 3743985 - 3744863 + | putative lipid kinase TERM 4148 3744991 - 3744952 - T 100 -12.3 -4.16787 | opp_overlap 3744953 3744958, overlap 3744953 3744958 AGAAGGAAATAATAA GTAAAAGGCTCAGTGAC CAAAAT GTCTCTGAGCCTTTTAT GCTTATATACCCATA TERM 4149 3744990 - 3744953 - T 100 -15.8 -3.08446 | opp_overlap 3744953 3744958, overlap 3744952 3744958 GAAGGAAATAATAAG TAAAAGGCTCAGTGAC CAAAAT GTCTCTGAGCCTTTTA TGCTTATATACCCAT TERM 4150 3744953 - 3744990 + T 100 -15.8 -2.89 | opp_overlap 3744953 3744952 3744958, overlap 3744958 GAAGGAAATAATAAG TAAAAGGCTCAGTGAC CAAAAT GTCTCTGAGCCTTTTA TGCTTATATACCCAT TERM 4151 3744985 - 3744958 - T 100 -11.3 -4.63179 | opp_overlap 3744953 3744958, overlap 3744953 3744952 AAATAATAAGTAAAA GGCTCAGTGAC CAAAAT GTCTCTGAGCC TTTTATGCTTATATA TERM 4152 3744958 - 3744985 + T 100 -11.3 -4.60073 | opp_overlap 3744958 3744953 3744952, overlap 3744953 AAATAATAAGTAAAA GGCTCAGTGAC CAAAAT GTCTCTGAGCC TTTTATGCTTATATA Cthe_3169 3745752 - 3744994 - | enoyl-[acyl-carrier-protein] reductase [NADH] Cthe_3170 3746174 - 3746827 + | ABC transporter related protein Cthe_3171 3746814 - 3749261 + | S-layer-like domain-containing protein TERM 4153 3749528 - 3749513 - g 76 -3.2 -5.26875 | overlap 3749515 CTGGGAATCAAAAAA GACTTG ACGA CAAGGC AGTCAGGGATTTTGA Cthe_3172 3749248 - 3750663 + | hypothetical protein TERM 4154 3750725 - 3750756 + F 100 -15.4 -5.14563 | opp_overlap 3750725 TGCTGTTTAAAAAAA GAAATGCTGTTTGT GAAA GCAAACAGCATTTC TTTTTTGGTGGGCGA TERM 4155 3750756 - 3750725 - f 100 -14.7 -5.40072 | opp_overlap 3750725 TGCTGTTTAAAAAAA GAAATGCTGTTTG TGAAAG CAAACAGCATTTC TTTTTTGGTGGGCGA Cthe_3173 3751054 - 3752052 + | sodium/calcium exchanger membrane region Cthe_3174 3752520 - 3752131 - | hypothetical protein Cthe_3175 3753205 - 3752522 - | hypothetical protein TERM 4156 3752746 - 3752757 + g 79 -3.6 -5.42265 | TATTGAGGTCCTCAG GGCT TACG GGCC TTTTTTGTGATTTGG TERM 4157 3753352 - 3753406 + r 100 -17.6 -3.37344 | opp_overlap 3753354 3753368, overlap 3753368 CCTTGCAAACCTAGA CAGTAAAATATAAAAATAGCAGGAGA AAA TCTCCTGCTATTTTTATATTTTCAAG TTAGTTACCTGGAAG TERM 4158 3753403 - 3753354 - R 100 -22.1 -2.98088 | gap 1, opp_overlap 3753352 3753368, overlap 3753368 TTGCAAACCTAGACA GTAAAATATAAAAATAGCAGGAGA AAA TCTCCTGCTATTTTTATATTTT-C AAGTTAGTTACCTGG TERM 4159 3753390 - 3753368 - R 100 -15 -5.30339 | opp_overlap 3753352 3753368, overlap 3753354 AGTAAAATATAAAAA TAGCAGGAGA AAA TCTCCTGCTA TTTTTATATTTTCAA TERM 4160 3753368 - 3753390 + r 100 -15 -5.28983 | opp_overlap 3753368 3753354, overlap 3753352 AGTAAAATATAAAAA TAGCAGGAGA AAA TCTCCTGCTA TTTTTATATTTTCAA Cthe_3176 3753620 - 3753411 - | small acid-soluble spore protein, alpha/beta type TERM 4161 3753635 - 3753663 + r 100 -13.5 -3.35798 | TTGCTATCACCTCCT TAGTCTTATTTTT TCT AAAAATAAGACTA TTATGAGTAGAAAGT TERM 4162 3753699 - 3753709 + r 70 -4 -4.96773 | TAACATTTTATTGGT GTTA CGT TAAC TTTATTTTTGCTTCG Cthe_3177 3754976 - 3753711 - | monogalactosyldiacylglycerol synthase TERM 4163 3754292 - 3754312 + g 71 -9.7 -2.84325 | opp_overlap 3754295, overlap 3754289 3754288 AGTTGAAATTCTTAA GCAGTATCG ATG CGATTCTGC TCATATTTCCGGAAC TERM 4164 3755117 - 3755131 + r 79 -5 -5.22104 | TGTTATACTTTAGAC TCGAAG TAA TTTCGA TTTTCTTATTTTTTA TERM 4165 3755213 - 3755245 + r 74 -6.3 -4.46775 | opp_overlap 3755216, overlap 3755215 3755216 GTAAGAAATAACAAT AAAGCATCAGAAGAT TTT ATCCTCTGATGCCTG TTTATATTTTACATG TERM 4166 3755215 - 3755243 + r 81 -8.9 -3.82656 | opp_overlap 3755216, overlap 3755213 3755216 AAGAAATAACAATAA AGCATCAGAAGAT TTT ATCCTCTGATGCC TGTTTATATTTTACA TERM 4167 3755242 - 3755216 - R 100 -14.6 -4.64159 | opp_overlap 3755215 3755213 3755216 AGAAATAACAATAAA GCATCAGAAGAT TTT ATCCTCTGATGC CTGTTTATATTTTAC TERM 4168 3755216 - 3755242 + r 90 -12.4 -2.88509 | opp_overlap 3755216, overlap 3755215 3755213 AGAAATAACAATAAA GCATCAGAAGAT TTT ATCCTCTGATGC CTGTTTATATTTTAC Cthe_3178 3756872 - 3755283 - | hypothetical protein Cthe_3179 3757051 - 3758307 + | Serine-type D-Ala-D-Ala carboxypeptidase TERM 4169 3758351 - 3758397 + F 100 -11.8 -4.21827 | AAATTCATATGGCAA TCCTCTTTTCCATGGTAATTTA TTG TATTTTACCATAGGAAAGAGGA TTTTACCGTGTTTAA Cthe_3180 3758464 - 3759375 + | hypothetical protein Cthe_3181 3760712 - 3759642 - | integrase catalytic subunit TERM 4170 3760053 - 3760063 + g 74 -4.6 -4.90013 | opp_overlap 3760053 CAAAAGAAACAATAA CTCG TAG CGGG TTTTTCGTTCAGTTA Cthe_3182 3760867 - 3761979 + | integrase catalytic subunit TERM 4171 3762166 - 3762197 + F 83 -8.1 -4.23615 | opp_overlap 3762175, overlap 3762175 GGTATTTAACTTTTA GGGTAGAATCTTC TTTTAT GAAGTTTTTACCC TTTATTGCGTCTGAT TERM 4172 3762432 - 3762422 - g 70 -5.4 -4.38154 | opp_overlap 3762422 ATATTTTTGATAAAA TGGT TGA ACCA ATTGATGTAATATTT trkA 3762304 - 3763701 + | potassium transporter peripheral membrane component TERM 4173 3763799 - 3763811 + G 70 -3.4 -4.90906 | opp_overlap 3763799, overlap 3763791 GTGCTCAGGATAGAA GCAT TATTT ATGC TTTTTCCTCTTCTCG TERM 4174 3763945 - 3763933 - g 83 -4.9 -5.28983 | CCCAAAAGACAAAAA CTTTA GAG TAAAG GACGCTTTTGTTGTT TERM 4175 3763993 - 3764005 + G 76 -3.3 -5.26119 | TTTTCTTTCGCTTTT CGGTG CGT TGCCG TTTTATTTTTCCGGA TERM 4176 3764275 - 3764259 - g 70 -5.9 -4.36914 | CGGCGCCTGATAAAA TTGTACC CAG GATACAA GAGACAGCCAAAATC TERM 4177 3765089 - 3765101 + G 74 -4.9 -4.78121 | TATGCCGCATTTTCC TCTTT TTC AAAGA TTGTTTTTTCGTTTT Cthe_3184 3763748 - 3765199 + | cation transporter TERM 4178 3765370 - 3765380 + G 86 -8.2 -4.86033 | opp_overlap 3765369 3765359, overlap 3765377 CAGAGGGTATGAAGT CCGG CTT CCGG TTTTTATACCGGTTT TERM 4179 3766302 - 3766278 - g 72 -3.6 -5.02476 | overlap 3766281 ATACGCTGGAAAAAA TGATTTCCGA CATTC TCGAAAAACA TCAATTAATATTTCC Cthe_3185 3765326 - 3766360 + | tRNA-guanine transglycosylases, various specificities TERM 4180 3766877 - 3766866 - g 76 -2.2 -5.38951 | AAGCTACAGAAAAAA CGGA GAAA TCCA CGCTTCAACCTCATT TERM 4181 3767481 - 3767499 + G 71 -5.3 -4.63542 | gap 1, overlap 3767484 CTATAAACTTTATCC TCACCAGC TGCA GCTGG-GA TTTTTAAAGCTTCTC Cthe_3186 3766432 - 3768183 + | radical SAM family protein Cthe_3187 3768627 - 3768205 - | putative anti-sigma regulatory factor, serine/threonine protein kinase Cthe_3188 3768943 - 3770430 + | copper amine oxidase-like protein Cthe_3189 3770664 - 3771281 + | hypothetical protein TERM 4182 3771559 - 3771531 - g 76 -8.9 -3.75738 | opp_overlap 3771537 TACCATTACGAAGAA TCAATACCTGCCA CTG TTGCCGGTATTGA AAAGTATTTGGGAAG Cthe_3190 3771324 - 3773456 + | RecD/TraA family helicase TERM 4183 3774293 - 3774278 - g 83 -7.6 -4.66833 | TTTCAATTGCAAAAA GGAAAG AAAT CTTTCC GAACTGCTGCGCTGC Cthe_3191 3773637 - 3774857 + | ATPase involved in chromosome partitioning-like protein Cthe_3192 3775630 - 3775001 - | hypothetical protein TERM 4184 3775701 - 3775689 - H 72 -2.7 -5.40072 | TCTGCTTCAAAAAAA CAATC AAA AATTG CGTTTCCGGTAAAGC Cthe_3193 3775854 - 3776564 + | phospholipase C zinc-binding TERM 4185 3776602 - 3776616 + T 70 -4.4 -4.9218 | opp_overlap 3776602 ATTCCGTATAATAAA TTTATT TAT AATAAA TTTTTATAATAACTA TERM 4186 3776761 - 3776727 - T 79 -8 -4.04579 | opp_overlap 3776727, overlap 3776712 GGTATAAATATTAAA GCCCGGAGTAAA GGGCTTTTGTA TTTACTCCGGAC TTACGGTTTAAACTT TERM 4187 3776779 - 3776794 + T 72 -3.3 -5.26119 | ACGGTTTAAACTTTG CAACT AAAAGG AGTTG TTTTATTTTTGGGAG Cthe_3194 3777487 - 3776837 - | hypothetical protein Cthe_3195 3777695 - 3778120 + | hypothetical protein TERM 4188 3778134 - 3778160 + T 93 -8 -5.2696 | opp_overlap 3778129 3778134 GAGAATGAAAGAAAA CCAGGAGTTG GTGTGCA CGGCTCCTGG TTTTTTGCATTTTCC Cthe_3196 3779564 - 3778203 - | hypothetical protein TERM 4189 3780238 - 3780222 - g 90 -9.5 -4.40237 | opp_overlap 3780221 3780222 CAGGACATAGTAAAA GGAAGAA GCG TTCTTCC GTTGATTGGTAAAGT TERM 4190 3780222 - 3780238 + G 70 -9.5 -2.63901 | opp_overlap 3780222, overlap 3780221 CAGGACATAGTAAAA GGAAGAA GCG TTCTTCC GTTGATTGGTAAAGT Cthe_3197 3779817 - 3780371 + | PRC-barrel domain-containing protein Cthe_3198 3780376 - 3780561 + | hypothetical protein TERM 4191 3780649 - 3780632 - f 93 -9.9 -4.58685 | opp_overlap 3780632 AAATCCTCTGAAAAA GACTGGA TGAA TCCAGTC TTTAACTACATAATG TERM 4192 3780632 - 3780649 + F 86 -9.9 -3.67296 | opp_overlap 3780632 AAATCCTCTGAAAAA GACTGGA TGAA TCCAGTC TTTAACTACATAATG Cthe_3199 3780749 - 3781798 + | hypothetical protein TERM 4193 3782041 - 3782030 - f 74 -5.8 -4.68705 | ACAACTTGAATAAAA CAGC GAAA GCTG AGTATAACCGGGAGA alaS 3782069 - 3784711 + | alanyl-tRNA synthetase TERM 4194 3784760 - 3784792 + F 100 -12.9 -3.55505 | opp_overlap 3784767, overlap 3784762 3784767 AAATGCTTGTAAACC TTGAAAATAGCAGGA TTT TCCTGCTATTTTCTG TCTTATTATGCTTTT TERM 4195 3784762 - 3784790 + F 100 -17.7 -3.32882 | opp_overlap 3784767, overlap 3784760 3784767 ATGCTTGTAAACCTT GAAAATAGCAGGA TTT TCCTGCTATTTTC TGTCTTATTATGCTT TERM 4196 3784785 - 3784767 - f 100 -11.8 -4.17089 | opp_overlap 3784762 3784760 3784767 TGTAAACCTTGAAAA TAGCAGGA TTT TCCTGCTA TTTTCTGTCTTATTA TERM 4197 3784767 - 3784785 + F 100 -11.8 -4.73633 | opp_overlap 3784767, overlap 3784762 3784760 TGTAAACCTTGAAAA TAGCAGGA TTT TCCTGCTA TTTTCTGTCTTATTA TERM 4198 3787011 - 3787026 + F 74 -9 -3.09878 | AAGGATTGAAACTTT GCAACG TTTC CGTTGC TGTTAACTACATAGC TERM 4199 3787603 - 3787583 - f 70 -6.1 -4.26076 | overlap 3787586 GTACTTCCAGTAAAA CAAGGATTG AAA CAATCCCAG CGAAGTCCTTTAGAG TERM 4200 3787600 - 3787586 - f 87 -8.6 -4.25256 | overlap 3787583 CTTCCAGTAAAACAA GGATTG AAA CAATCC CAGCGAAGTCCTTTA TERM 4201 3788363 - 3788337 - f 93 -11 -4.10744 | opp_overlap 3788336 3788335 GGATTGAAACAATAA TCCAAAAGCATT TCT ACTGCTTTTGGA AATTTGTTGAAGTGG TERM 4202 3792811 - 3792833 + G 71 -7 -3.98448 | ATATGTAAAAAACCT TGTACTTCAG GCG CTGATGTGCA TTATGTTTATTGATA Cthe_3201 3791468 - 3793309 + | CRISPR-associated Csh1 family protein Cthe_3202 3793309 - 3794226 + | CRISPR-associated Csh2 family protein Cthe_3203 3794241 - 3794954 + | CRISPR-associated Cas5 family Hmari subtype protein Cthe_3204 3794968 - 3797370 + | CRISPR-associated helicase Cas3 Cthe_3205 3797384 - 3798052 + | hypothetical protein Cthe_3206 3798132 - 3798509 + | hypothetical protein TERM 4203 3799164 - 3799176 + G 73 -7.7 -3.90586 | opp_overlap 3799164 3799163 GAGTGGCAGAAAAGG CCTCT GGG AGAGG TTTATCCGATAGTAT Cthe_3207 3798675 - 3799898 + | transposase, mutator type TERM 4204 3799945 - 3799904 - T 73 -8.2 -3.49777 | opp_overlap 3799899 3799905 3799906, overlap 3799908 GCGTATATAGTATAA TCA-AGGGGTTCAGGGAAAC TCTG GTTTCC-TGAACCCCCCTGT AATATTTTATACGCA TERM 4205 3799905 - 3799944 + T 83 -10.8 -2.98387 | gap 1, opp_overlap 3799904 3799908, overlap 3799899 3799906 CGTATATAGTATAAT CA-AGGGGTTCAGGGAAAC TCT GGTTTCCTGAACCCCCCTG TAATATTTTATACGC TERM 4206 3799906 - 3799942 + T 81 -10.1 -3.03972 | opp_overlap 3799904 3799908, overlap 3799905 3799899 GTATATAGTATAATC AAGGGGTTCAGGGAAAC TCT GGTTTCCTGAACCCCCC TGTAATATTTTATAC TERM 4207 3799940 - 3799908 - T 100 -15.8 -3.49182 | gap 1, opp_overlap 3799906 3799905 3799899, overlap 3799904 ATATAGTATAATCAA GGGGTTCAGGGAAAC TCTG GTTTCC-TGAACCCC CCTGTAATATTTTAT TERM 4208 3799989 - 3800008 + T 83 -8 -4.26188 | opp_overlap 3799992, overlap 3799978 ATTTTTCTTTTGTAA GAATTTCT TATC AGAAATTC TTTTGAATCTATAAA Cthe_3208 3801253 - 3800183 - | integrase catalytic subunit TERM 4209 3800594 - 3800604 + g 74 -4.6 -4.90013 | opp_overlap 3800594 CAAAAGAAACAATAA CTCG TAG CGGG TTTTTCGTTCAGTTA TERM 4210 3802012 - 3802001 - g 73 -7.2 -4.02581 | opp_overlap 3802000, overlap 3801996 TGGGAGAAAAGATAA CGGC CTGC GCCG GTATTGCAATTGTGA Cthe_3209 3801316 - 3802515 + | hypothetical protein Cthe_3210 3802518 - 3803192 + | hypothetical protein TERM 4211 3803354 - 3803373 + G 77 -8 -4.17425 | opp_overlap 3803354 3803356 TTGTTCCGAAGGAGA TATTGAAC GGCA GTTCAATA TTTTACAATGCTTAT Cthe_3211 3803185 - 3804786 + | hypothetical protein Cthe_3212 3804783 - 3806114 + | hypothetical protein Cthe_3213 3806121 - 3806486 + | hypothetical protein TERM 4212 3807684 - 3807694 + G 75 -5.4 -4.70266 | opp_overlap 3807684 GGAGAGATTTTAGAA CGAA GCT TTCG TTTTTGGATGCTGTT Cthe_3214 3806501 - 3808486 + | hypothetical protein Cthe_3215 3808630 - 3809880 + | CRISPR-associated TM1812 family protein TERM 4213 3810615 - 3810627 + G 73 -7.7 -3.90586 | opp_overlap 3810615 3810614 GAGTGGCAGAAAAGG CCTCT GGG AGAGG TTTATCCGATAGTAT Cthe_3216 3810126 - 3811349 + | transposase, mutator type TERM 4214 3811396 - 3811355 - f 73 -8.2 -3.49777 | opp_overlap 3811350 3811356 3811357, overlap 3811359 GCGTATATAGTATAA TCA-AGGGGTTCAGGGAAAC TCTG GTTTCC-TGAACCCCCCTGT AATATTTTATACGCA TERM 4215 3811356 - 3811395 + F 83 -10.8 -2.98387 | gap 1, opp_overlap 3811355 3811359, overlap 3811350 3811357 CGTATATAGTATAAT CA-AGGGGTTCAGGGAAAC TCT GGTTTCCTGAACCCCCCTG TAATATTTTATACGC TERM 4216 3811357 - 3811393 + F 81 -10.1 -3.03972 | opp_overlap 3811355 3811359, overlap 3811356 3811350 GTATATAGTATAATC AAGGGGTTCAGGGAAAC TCT GGTTTCCTGAACCCCCC TGTAATATTTTATAC TERM 4217 3811391 - 3811359 - f 100 -15.8 -3.49182 | gap 1, opp_overlap 3811357 3811356 3811350, overlap 3811355 ATATAGTATAATCAA GGGGTTCAGGGAAAC TCTG GTTTCC-TGAACCCC CCTGTAATATTTTAT TERM 4218 3811440 - 3811459 + F 83 -8 -4.26188 | opp_overlap 3811443, overlap 3811429 ATTTTTCTTTTGTAA GAATTTCT TATC AGAAATTC TTTTGAATCTATAAA TERM 4219 3811855 - 3811843 - g 74 -4.8 -4.72986 | GATGTGTATGAAAAA TGGG GAAGA CCCA GGAATATATATGTTG TERM 4220 3812084 - 3812053 - g 71 -7.4 -3.82202 | opp_overlap 3812055, overlap 3812055 GACTTGGAAAGAGAA CAGGCCATTTCGTT ATTT AACAAAATGGACTA TGTATCTGCGTACAG Cthe_3217 3811624 - 3812916 + | hypothetical protein TERM 4221 3815761 - 3815784 + F 71 -8.2 -3.3334 | opp_overlap 3815761 3815766 3815767, overlap 3815767 ACAAGGATTGAAACA TAGAAGGGGC TTAA GCCCTTTTTA TTCTGACCTGAAGTT TERM 4222 3815767 - 3815778 + F 91 -7.2 -5.19328 | opp_overlap 3815767 3815766 3815761, overlap 3815761 ATTGAAACATAGAAG GGGC TTAA GCCC TTTTTATTCTGACCT TERM 4223 3817108 - 3817091 - g 73 -5.5 -4.58395 | overlap 3817092 TCCAGCGTTGAAAAA GCCTGCA TAAT TGCAGGA TTAGACCCATACATT TERM 4224 3817107 - 3817092 - g 72 -9 -3.34716 | overlap 3817091 CCAGCGTTGAAAAAG CCTGCA TAAT TGCAGG ATTAGACCCATACAT Cthe_3218 3816440 - 3817435 + | CRISPR-associated Cas1 family protein Cthe_3219 3817429 - 3817719 + | CRISPR-associated Cas2 family protein Cthe_3220 3817694 - 3818308 + | CRISPR-associated Cas4 family protein TERM 4225 3818344 - 3818318 - f 100 -6.6 -5.71295 | opp_overlap 3818318 3818323 ATATAAAAATAAAAA GCCACTGCGA AAAAGCA TCACAATGGC TTTCTTGCACTTCAT TERM 4226 3818861 - 3818847 - f 72 -5.7 -4.44046 | overlap 3818843 TTCATTTCAAACAAA GTCCA TGCTT TGGAC ACATATAAGCGTATA TERM 4227 3819672 - 3819683 + G 70 -3 -5.05113 | opp_overlap 3819672, overlap 3819667 GATGGCGAGTGAAAA GAAA AATA TTTC TTTTATTTATGTCAC Cthe_3221 3819665 - 3820312 + | hypothetical protein Cthe_3222 3820449 - 3821249 + | hypothetical protein TERM 4228 3821625 - 3821639 + G 78 -7.2 -4.44608 | GATATAGGTATAGTT TTGCTA GAT TAGCAA TTGTTTTTACATACA Cthe_3223 3821297 - 3821794 + | hypothetical protein TERM 4229 3821945 - 3821988 + F 83 -4.6 -5.65678 | GTAGATGATACAACG GACTGACAAGTATTTCTCTT ATAA AAGGGATTTAGTTGGCAGTC TTTTTTATATTTTAT Cthe_3224 3822304 - 3823164 + | hypothetical protein Cthe_3225 3823879 - 3824391 + | hypothetical protein TERM 4230 3824886 - 3824896 + G 70 -5.4 -4.42386 | opp_overlap 3824886 GTTTGAGAAAGGAAG CAAG AAA CTTG TTTTGTACATAGGGA Cthe_3226 3824638 - 3825426 + | copper amine oxidase-like protein TERM 4231 3825853 - 3825863 + G 70 -5.4 -4.42386 | opp_overlap 3825853 GTTTGAGAAAGGAAG CAAG AAA CTTG TTTTGTACATAGGGA TERM 4232 3826347 - 3826367 + G 81 -2.6 -5.68489 | opp_overlap 3826347, overlap 3826349 TTTGGATAAAAGAAT CTTTTATG GAAGA CATAAATG TTTTTTATTGTTCTG Cthe_3227 3825605 - 3826408 + | copper amine oxidase-like protein TERM 4233 3826730 - 3826740 + G 70 -5.4 -4.42386 | opp_overlap 3826730 GTTTGAGAAAGGAAG CAAG AAA CTTG TTTTGTACATAGGGA Cthe_3228 3826482 - 3827282 + | copper amine oxidase-like protein Cthe_3229 3827465 - 3828682 + | transposase, IS4 TERM 4234 3828730 - 3828746 + G 77 -5.2 -4.88736 | opp_overlap 3828744, overlap 3828744 TTTAATTGTGTCGGT TGCTTT TTCAC AAAGCA TTTTTGTAAATGCTG TERM 4235 3830362 - 3830344 - g 74 -6 -4.36863 | overlap 3830346 GGAAGAGAAAAAATA TCTTGACG GAC CGTCAACA AGGGCAAAGACTGGA Cthe_3230 3828722 - 3831610 + | hypothetical protein TERM 4236 3831644 - 3831692 + F 100 -6.8 -6.07374 | CGCAGAACGTAAAAA GAGGCTGGCAGGCATTTTTC AAACAAAAG GAAATTTGCTTGTCAGTCTC TTTTTTATTTTTTAT TERM 4237 3831942 - 3831956 + G 70 -8.6 -3.33483 | TTATTTTGGCTGGAG CTGCAA TAT TTGCAG TTGGTAGTTTAAGTA Cthe_3231 3831881 - 3832360 + | hypothetical protein Cthe_3232 3832532 - 3837541 + | YD repeat-containing protein TERM 4238 3837584 - 3837557 - f 100 -12.8 -4.41241 | opp_overlap 3837557 CAAATCGGTATAAAA GGCCACGTTC TTATTCTG GAACGTGGCC TTCAGTTAAAAGTAA TERM 4239 3837557 - 3837584 + F 100 -13.5 -3.17723 | opp_overlap 3837557 CAAATCGGTATAAAA GGCCACGTTCT TATTCT GGAACGTGGCC TTCAGTTAAAAGTAA TERM 4240 3838677 - 3838698 + G 72 -4.5 -4.66537 | opp_overlap 3838677 TATGAGAGGTCAGAA TACAGGA GCAACCAA TCCTGTA TTTTATGTTGGAGCA Cthe_3233 3838252 - 3838992 + | hypothetical protein TERM 4241 3839057 - 3839001 - T 100 -13.4 -5.24796 | gap 1, opp_overlap 3839003 3839007 3839020, overlap 3839002 3839003 TGTATAGAATAAAAA GGTCAATTCATTGAAAAAGGGTAGCTC GCGG GAGCTACCTTTTTTCAATGAATTT-CA TTTGTTTACTGTCCC TERM 4242 3839056 - 3839002 - T 100 -16.9 -3.73793 | gap 1, opp_overlap 3839003 3839007 3839020, overlap 3839001 3839003 GTATAGAATAAAAAG GTCAATTCATTGAAAAAGGGTAGCTC GCGG GAGCTACCTTTTTTCAATGAATTT-C ATTTGTTTACTGTCC TERM 4243 3839056 - 3839003 - T 100 -17.1 -2.83191 | opp_overlap 3839003 3839007 3839020, overlap 3839002 3839001 TATAGAATAAAAAGG TCAATTCATTGAAAAAGGGTAGCTC GCGG GAGCTACCTTTTTTCAATGAATTTC ATTTGTTTACTGTCC TERM 4244 3839003 - 3839057 + T 100 -17.7 -4.53602 | gap 1, opp_overlap 3839002 3839003 3839001, overlap 3839007 3839020 TATAGAATAAAAAGG T-CAATTCATTGAAAAAGGGTAGCTC GCGG GAGCTACCTTTTTTCAATGAATTTCA TTTGTTTACTGTCCC TERM 4245 3839007 - 3839052 + T 100 -24.5 -4.28115 | opp_overlap 3839002 3839003 3839001, overlap 3839003 3839020 GAATAAAAAGGTCAA TTCATTGAAAAAGGGTAGCTC GCGG GAGCTACCTTTTTTCAATGAA TTTCATTTGTTTACT TERM 4246 3839020 - 3839039 + T 100 -12.2 -5.10497 | opp_overlap 3839002 3839003 3839001, overlap 3839007 3839003 AATTCATTGAAAAAG GGTAGCTC GCGG GAGCTACC TTTTTTCAATGAATT Cthe_3234 3839820 - 3839035 - | hypothetical protein TERM 4247 3839071 - 3839093 + g 77 -6.3 -4.53475 | CATTTGTTTACTGTC CCACTCAAA TATTT TTTGAGAGG TTGTTTTTCTGGAAT Cthe_3235 3840922 - 3839972 - | hypothetical protein TERM 4248 3840141 - 3840154 + g 79 -5.9 -4.96501 | opp_overlap 3840141 CTATACGCCTTTAAA GCCGG AGTG TCGGC TTTCTTTTTCTCCCA TERM 4249 3840820 - 3840842 + g 85 -2.7 -5.77677 | gap 1, opp_overlap 3840809, overlap 3840821 ACAACAAATCCATCA G-GCTTTGCG AAAA CACAAAGCTC TTTTTTGTTGTTTTC TERM 4250 3840821 - 3840840 + g 74 -6.4 -4.47161 | opp_overlap 3840809, overlap 3840820 CAACAAATCCATCAG GCTTTGCG AAAA CACAAAGC TCTTTTTTGTTGTTT TERM 4251 3841243 - 3841199 - H 100 -15.2 -2.79796 | gap 1, overlap 3841212 3841241 GGGTAGGCCAGCATA TTGTTTGTATAGACGGCTGGC TCTC GCC-GCCGCCCATACAAACAG CTGGTCGGGGGATAC TERM 4252 3841269 - 3841243 - H 73 -7.8 -3.61232 | overlap 3841241 CCGCCCATACAAACA GCTGGTCGGGGG ATA CCCCCGAACCCC CAAAAGCCCCCCAGC Cthe_3236 3841317 - 3841622 + | hypothetical protein TERM 4253 3842456 - 3842438 - g 80 -11.6 -2.90486 | overlap 3842428 AACAAGCCGGATATA CCGGAGGG CAT CCCACCGG TACAACACCAGCAGA Cthe_3237 3841627 - 3843018 + | relaxase/mobilization nuclease domain-containing protein Cthe_3238 3843034 - 3843276 + | hypothetical protein