TransTermHP v2.07 (built on Jan 21 2009) 25 bins; sample size is 20000000 --pval-conf=/fs/szasmg2/carlk/TTupdate2/expterm.dat --gc=-2.3 --au=-0.9 --gu=1.3 --mm=3.5 --gap=6 --max-len=59 --min-stem=4 --max-loop=13 --min-loop=3 --uwin-length=6 --uwin-require=3 --max-hp-score=-2 --max-tail-score=-2.5 --loop-penalty=1,2,3,4,5,6,7,8,9,10,11 --start-cut=0 --end-cut=25 Genes: 0.323458 %AT, 5554716 nt, 42933 terms. Intergenic: 0.370071 %AT, H2T: 620186 nt, 5425 terms; T2T: 168895 nt, 3163 terms; H2H: 271655 nt, 5046 terms. Each terminator entry starts in column 3 and is of the form: term # start - end +/- regionconf hp tail | notes Followed by the sequence of the 5' tail, 5' stem, loop, 3' stem, and 3' tail. Genes are interspersed, and start the first column. SEQUENCE gi|188590795|ref|NC_010528.1| Cupriavidus taiwanensis, complete genome (length 3416911) TERM 1 2291 - 2266 - g 86 -10.3 -4.62783 | CATGTATTCGAAAAA GCGGCCTGCCA ATAT TGCCCGGCCGC GCCAGATTGCGATGT dnaA 707 - 2476 + | chromosomal replication initiator protein DnaA, DNA-binding transcriptional dual regulator TERM 2 2553 - 2495 - f 100 -23.3 -2.52543 | gap 2, opp_overlap 2507 2517 2541, overlap 2531 ATGGTTTCCAAGTCA TTCCCGCGCAGGCGGGAATCCAGTGACTT TTG AAGACGCTGGGTTCCCGCCTGCGCGGG-- AACGACAGGCAGGCG TERM 3 2541 - 2569 + F 73 -8.1 -4.07568 | gap 1, opp_overlap 2495 2531 2559 2561 GAAGACGCTGGGTTC CCGCCTGCGCGG GAACGA CAG-GCAGGCGG TTTTGAAGGGCCAGC dnaN 2901 - 4016 + | DNA polymerase III, beta-subunit TERM 4 4125 - 4169 + F 93 -9.2 -4.72272 | gap 1, opp_overlap 4123 4121, overlap 4123 4133 CAGGGGATGAATATC CCGCCGCGGGGGCAGGATCGT TACG ACGATCC-GCCCCTTTTGCCG TTTTTAGTAACCCGC TERM 5 4133 - 4161 + F 100 -15.4 -4.31329 | gap 1, opp_overlap 4123 4121, overlap 4123 4125 GAATATCCCGCCGCG GGGGCAGGATCGT TACG ACGATCC-GCCCC TTTTGCCGTTTTTAG TERM 6 5109 - 5095 - g 75 -5.6 -4.62471 | overlap 5097 GCCAACGCCGAAAAA GACGGC ATC GCCGTG GAAGTGGCCATGCAG TERM 7 5107 - 5097 - g 70 -8.2 -3.92577 | overlap 5095 CAACGCCGAAAAAGA CGGC ATC GCCG TGGAAGTGGCCATGC gyrB 4270 - 6795 + | DNA gyrase, subunit B (type II topoisomerase) TERM 8 6833 - 6860 + F 100 -12.8 -5.4505 | opp_overlap 6832 6833 6835 GACCTGAGAATTAAG GACCCATAAGCT AAGA GGCTTGTGGGTC TTTTTTATTAGCAGC RALTA_A0004 7033 - 7401 + | putative Type I restriction enzyme R fragment (HSDR), N_term motif TERM 9 8412 - 8429 + G 75 -9.9 -4.0098 | TCCTGGCATCGCGCC TGGGATC AAGT GATCCCA TTCTTTACGTTCCCG RALTA_A0005 7422 - 8681 + | Transposase of insertion sequence ISRta2, IS256 family TERM 10 8691 - 8717 + T 75 -11.6 -3.65902 | CGCTGAGATAATGCT GGCTCACCGT CGAATTA GCGGTGAGCC TTTACCTGCCCTGCA RALTA_A0006 9159 - 8773 - | conserved hypothetical protein, DUF350; putative transmembrane protein RALTA_A0007 9953 - 9231 - | hypothetical protein TERM 11 9817 - 9834 + g 84 -5.5 -5.0916 | gap 1, overlap 9813 9819 CCAACGATCCACAGT GC-GGGCG AGC TGCCCTGC TTTTTCTGTTCGGCC gsp 11132 - 9957 - | Bifunctional glutathionylspermidine synthetase/Glutathionylspermidine amidase RALTA_A0009 12586 - 11132 - | Homospermidine synthase (HSS) TERM 12 12600 - 12549 - G 77 -11.4 -3.85698 | gap 1, opp_overlap 12548 12550 12577 12589, overlap 12550 CTTCCGCCCGAGAAA CGGCAAGGGCGGTCCCGGACGCGGC CAC GCCG-GCACAGGACTGCCTTCGCCT GGCTTTATCAATTCT TERM 13 12599 - 12550 - G 72 -14.9 -2.91276 | gap 1, opp_overlap 12550 12548 12577 12589, overlap 12549 TTCCGCCCGAGAAAC GGCAAGGGCGGTCCCGGACGCGGC CAC GCCG-GCACAGGACTGCCTTCGCC TGGCTTTATCAATTC RALTA_A0010 13652 - 12702 - | Formimidoylglutamase glnQ 14410 - 13649 - | high-affinity glutamine transport protein, ABC transporter, ATP binding component TERM 14 13977 - 14011 + g 81 -12 -3.85817 | overlap 13944 CCGCCGGACAGGCTG GCCGGCATGGCGTGCG CCT TGTGCGCCAGGCCGAC TTTCTCCAGCAGGCT glnP 15075 - 14407 - | high-affinity glutamine transport protein, ABC transporter, membrane component glnH 15849 - 15094 - | high-affinity glutamine transport protein, ABC transporter, periplasmic binding component peri_bind) TERM 15 15972 - 15937 - R 80 -14.6 -3.14564 | opp_overlap 15931 15947 TCAGGTTTTCAGTAA GACTGCAGCCGCGCGG AAAT CCGCATGGCTGCCGCC ACGGTCATGTCGATC RALTA_A0014 16724 - 15930 - | putative transcriptional regulator, IclR family RALTA_A0015 17518 - 16859 - | Putative isoprenylcysteine carboxyl methyltransferase transmembrane protein TERM 16 17420 - 17386 - G 75 -4.9 -4.62069 | gap 2, overlap 17387 17389 TGGCGAGCGCAAAAA GGACCAGCGCCAGCGCG ATG CGCGCCGG-G-TGGGCA AAAAAGGGCCCCGGG TERM 17 17438 - 17426 - G 84 -4.7 -5.00616 | overlap 17427 17428 CGGGTGGGCAAAAAA GGGCC CCG GGCCG CCCCAGCCGGCAATG RALTA_A0016 17664 - 17987 + | hypothetical protein RALTA_A0017 18507 - 18007 - | hypothetical protein RALTA_A0018 19414 - 18521 - | conserved hypothetical protein; putative methyltransferase RALTA_A0019 19479 - 19922 + | putative transcriptional regulator, MerR family RALTA_A0020 21734 - 19935 - | putative METHYL-ACCEPTING CHEMOTAXIS TRANSMEMBRANE receptor RALTA_A0021 22066 - 23244 + | putative lipoprotein TERM 18 23267 - 23293 + F 100 -20.2 -5.14563 | GGATCGGGGAGCGGG CCGGAAGGGGGC AAT GCCCTCTTCCGG TTTTTTCATGGGCGA RALTA_A0022 23386 - 24321 + | conserved hypothetical protein, DUF72; putative exported protein dbpA 24344 - 25753 + | ATP-dependent RNA helicase, stimulated by 23S rRNA RALTA_A0024 25908 - 26348 + | conserved hypothetical protein, CBS domain TERM 19 27819 - 27780 - g 74 -14.2 -3.30441 | gap 1 GATGAGCGTGCAGAA CGCGCTGGAG-CGGCGC GATACCG GCGCCGGCACCGGCGCG CTGCTGGTGCTGCGC RALTA_A0025 26521 - 28146 + | putative transporter, MSF family; putative Drug resistance transporter EmrB/QacA subfamily RALTA_A0026 28229 - 28858 + | putative glutathione peroxydase TERM 20 28865 - 28835 - T 83 -15.4 -3.1855 | opp_overlap 28835 28862, overlap 28816 GTGGCGAAGATCGAA TCGCTGCTCGCCGC GCC GCGCTGAGCAGCGA TCCTGTGCCGCGCGG TERM 21 28835 - 28865 + T 83 -17.6 -2.62184 | opp_overlap 28816 28835, overlap 28862 GTGGCGAAGATCGAA TCGCTGCTCGCCGC GCC GCGCTGAGCAGCGA TCCTGTGCCGCGCGG gst 29513 - 28887 - | glutathionine S-transferase RALTA_A0028 30383 - 29655 - | putative Arylmalonate decarboxylase / malonate isomerase RALTA_A0029 31779 - 30481 - | putative transporter, MFS family; putative Sugar phosphate permease TERM 22 31259 - 31249 - G 72 -8.2 -3.96148 | GCCGGCGACGATAAA GGCG AGG CGCC ATGAACCCAGCGAGG RALTA_A0030 31970 - 32689 + | putative transcriptional regulator, GntR family RALTA_A0031 32722 - 33570 + | 4-hydroxyphenylacetate degradation bifunctional protein: 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase ; 5-carboxymethyl-2-oxo-hex-3-ene-1,7-dioate decarboxylase TERM 23 34283 - 34262 - g 74 -11.5 -3.72695 | AGCCGGCCGAGGAAA TCGGCGCCG GCGG CGGGGCCGA GCGCATGCTGACCGA RALTA_A0032 33775 - 35019 + | putative HIPPURATE HYDROLASE RALTA_A0033 35916 - 35044 - | putative transcriptional regulator, Arac family fsr 36044 - 37291 + | fosmidomycin/multidrug transporter, MFS family RALTA_A0035 37879 - 37328 - | putative TRANSCRIPTIONal REGULATOR, MarR family TERM 24 37415 - 37378 - G 78 -16.9 -3.01712 | opp_overlap 37382 GTGGCGGCTCGAACA TGCGCAGCCAGCGGCGC AGCA GCGCGGCCAGCTGCGCG CGCTCCGTCGCGGTC RALTA_A0036 37970 - 38881 + | TRANSMEMBRANE PROTEIN, similar to pecM, Involved in pectinase, cellulase, and blue pigment regulation RALTA_A0037 38979 - 39242 + | hypothetical protein RALTA_A0038 39356 - 40339 + | conserved hypothetical protein, UPF0065 RALTA_A0039 41052 - 40372 - | putative RESPONSE REGULATOR TERM 25 41432 - 41398 - g 73 -12.1 -3.53444 | gap 2 TGAGCTTCGGCGAAA GCCGGCGCCTGCTGCTG GCG CTGC-GC-GACGCCGGC TTCGACCTGCTGCTG RALTA_A0040 41283 - 42011 + | putative RESPONSE REGULATOR RALTA_A0041 42008 - 42775 + | hypothetical protein; putative exported protein; putative histine kinase of the two-component system TERM 26 42796 - 42781 - T 100 -10.4 -5.14563 | opp_overlap 42781 GCGCCCATGAAAAAA GGCACC CGAA GGTGCC TTTGGCCAGGAACTG RALTA_A0042 43924 - 42827 - | putative OUTER MEMBRANE PORIN TERM 27 44237 - 44257 + r 86 -18.3 -2.81464 | GCCCCGTGGGCACAT GGACCCGGC GTT GCCGGGTCC TGTCCTCAGTGCTGC minE 44517 - 44263 - | cell division topological specificity factor, reverses MinC inhibition of FtsZ ring formation TERM 28 44289 - 44305 + g 73 -12.3 -3.42574 | GGATCTCGATCTTGA CCTCGAG CAC CTCGAGG TTGTCCTGGCGTTCC TERM 29 44411 - 44367 - G 74 -12 -3.57792 | gap 1, opp_overlap 44408, overlap 44368 44370 TGACGTACTTGGAAA TCACCG-CCACCAGCTCGCGC TGCA GCGCGGGCAGGTAGTCGGCGG GGGCGGAATGGCCCG TERM 30 44410 - 44368 - G 70 -15.5 -2.74461 | gap 1, opp_overlap 44408, overlap 44367 44370 GACGTACTTGGAAAT CACCG-CCACCAGCTCGCGC TGCA GCGCGGGCAGGTAGTCGGCG GGGGCGGAATGGCCC TERM 31 44408 - 44370 - G 72 -14.5 -2.91695 | gap 1, overlap 44368 44367 CGTACTTGGAAATCA CCG-CCACCAGCTCGCGC TGCA GCGCGGGCAGGTAGTCGG CGGGGGCGGAATGGC minD 45354 - 44539 - | membrane ATPase of the MinC-MinD-MinE system TERM 32 44838 - 44860 + g 70 -12.6 -3.36273 | GGTGTTCCTTGATCG GCTCGCCGCC CTC GGTGGCGCGC TTGGTCTTGGACGCC TERM 33 45401 - 45450 + r 73 -3.4 -4.72272 | gap 1, overlap 45405 45406 GCGCTCTCTATGATC CGGTTCCGGGAA-CGCCGCGGTT ACTTG AGCCGCAGCGCTTCGAGGATCAG TTTTTCATCGGCCAG minC 46248 - 45421 - | cell division inhibitor, inhibits FtsZ ring formation TERM 34 45791 - 45816 + g 90 -19.7 -3.14132 | overlap 45797 ACGGCCGCGTCGGTG GCCGCCTGCGC CGCG GCGCGGGCGGC TTCCTCGCGCGCCGC RALTA_A0046 46461 - 47411 + | putative Mg2+ transporter protein, CorA-like TERM 35 47577 - 47602 + G 71 -11.9 -3.57792 | gap 1, overlap 47593 GAAAGCCCATCCCTC GCGTGCC-GCCA TGC TGGCCGGCATGC TTTGCGCATGGCTGC RALTA_A0047 47557 - 48258 + | conserved hypothetical protein, tetratricopeptide repeats; putative exported protein gatB 49915 - 48458 - | Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B (Asp/Glu-ADT subunit B) TERM 36 48542 - 48554 + g 70 -3.3 -4.4078 | overlap 48520 48543 TGCCTGGCCGACCAG CGCGT TGA ACGCC TTTTCCTTGCCCGAG RALTA_A0049 51120 - 50005 - | putative enzyme, Dienelactone hydrolase family TERM 37 50060 - 50093 + g 74 -14.5 -3.04144 | AGCGCGGCCACGCGC GCCACCGCGTCGCCG CCAA CGGTGACGCTCTGGC TCTTGCGCATGGCGG RALTA_A0050 51605 - 51147 - | putative lipoprotein; putative membrane protein gatA 53113 - 51608 - | Glutamyl-tRNA(Gln) amidotransferase subunit A (Glu-ADT subunit A) TERM 38 52007 - 52037 + g 81 -12.7 -3.83568 | gap 2, overlap 52012 CAGGATGCGGCGCTT GACCTCGGCGCCGAA GCC TTCGGCGC-G-GGTC TTCTTGTACATGTCG gatC 53485 - 53186 - | Glutamyl-tRNA(Gln) amidotransferase subunit C (Glu-ADT subunit C) mreB 54109 - 55152 + | cell wall structural complex MreBCD, actin-like component MreB TERM 39 55325 - 55335 + F 76 -8.2 -4.18488 | overlap 55301 GGGGCGTTTCCGCGT GGCC TCC GGCC TTTGTTCGGGTAAAT mreC 55349 - 56314 + | cell wall structural complex MreBCD, actin-like component MreC TERM 40 56336 - 56352 + G 77 -10.8 -3.92522 | opp_overlap 56328 CCCAATACCTGCTGC GGCCGG TCAAT CCGGCC TTTATCGCCTTCAGC mreD 56311 - 56823 + | cell wall structural complex MreBCD transmembrane component MreD mrdA 56896 - 59202 + | Peptidoglycan glycosyltransferase (penicillin-binding protein 2) mrdB 59232 - 60356 + | cell wall shape-determining protein TERM 41 61037 - 61064 + G 71 -9.9 -3.79043 | gap 2, overlap 61007 61032 CGCCGGCGAGGCCGA GGCCGGCGCCGAC GTGC GT-GGCGC-GGCC TTTGGCTTGCTGGTG RALTA_A0058 60498 - 61184 + | conserved hypothetical protein, DUF484 xerC 61235 - 62284 + | site-specific tyrosine recombinase gcvA2 63212 - 62286 - | transcriptional regulator of Glycine cleavage system operon, LysR family RALTA_A0061 63490 - 63858 + | hypothetical protein TERM 42 63974 - 63993 + F 100 -16.4 -4.42639 | TGAACGGGGCAGGCA GGGCCGGC GCAA GCCGGCCC TTTTCGTTACACTCT lipB 64013 - 64741 + | Lipoyltransferase (Lipoyl-[acyl-carrier protein]-protein-N-lipoyltransferase) (Lipoate-protein ligase B) TERM 43 65442 - 65410 - g 78 -12.7 -3.79473 | gap 1, overlap 65402 65429 65432 ACCACAACATGGAAA CCGTGCCGCGCCTG TACAAG CAGGCGCGCC-CGG GCGCCGACTACGCGC lipA 64782 - 65786 + | lipoyl/lipoate synthase, an iron-sulfur enzyme TERM 44 65837 - 65806 - T 93 -18.8 -3.28712 | opp_overlap 65811, overlap 65811 GTTGGTTGGGCATAA GAAAACGGCCGGGG GTTT CCCCGGCCGTTTTT GTTTTGGCTCGTGCC TERM 45 65832 - 65811 - T 100 -18.7 -4.77165 | opp_overlap 65811, overlap 65806 TTGGGCATAAGAAAA CGGCCGGGG GTTT CCCCGGCCG TTTTTGTTTTGGCTC TERM 46 65811 - 65832 + T 100 -18.7 -5.48213 | opp_overlap 65811 65806 TTGGGCATAAGAAAA CGGCCGGGG GTTT CCCCGGCCG TTTTTGTTTTGGCTC kluB 66163 - 65888 - | toxin of a toxin/antitoxin system kluA 66475 - 66197 - | antitoxin of a toxin/antitoxin system TERM 47 66620 - 66598 - H 70 -12.2 -3.24747 | TTTCGATATGATGAA TTCATCGATA AAT TATCGATGAA ATACCAAGACGTCAC TERM 48 67287 - 67307 + G 73 -9.6 -3.85698 | CCGCCGTCCCTGTTC GCGCCCGG CGATA CCGTGCGC TTTGTCGCCGAGGAA RALTA_A0066 66687 - 67334 + | Allophanate hydrolase subunit1 (ahs1) TERM 49 67387 - 67398 + G 73 -7.2 -4.13767 | GGACCTGGGCCGTAC CGGC TTCC GCCG TTTTGGCGTGGGCCG TERM 50 68017 - 67975 - g 74 -13.3 -3.36749 | gap 2, opp_overlap 67998 CACGCCCAACAGCAA CCGCATGGGCCTGCGCCTGGC CGG GCC-GGCGCTGGCGCG-GCGG CCCGAGCGCAGTGCC RALTA_A0067 67331 - 68350 + | allophanate hydrolase, subunit2 (ahs2) RALTA_A0068 68390 - 69130 + | putative lipoprotein, LamB/YcsF family protein RALTA_A0069 69238 - 69966 + | conserved hypothetical protein, DUF969; putative TRANSMEMBRANE PROTEIN RALTA_A0070 69977 - 70927 + | conserved hypothetical protein, DUF979; putative TRANSMEMBRANE PROTEIN TERM 51 71387 - 71438 + G 73 -10.1 -3.89614 | gap 3 CAACCATGTGTTCTA CGGGCTGATGCACCG-GCTGGCGCGG CAC CCG-GCCGGCACGGTGCG-CGGCGGG TTTATCCACATTCCC pcp1 70944 - 71594 + | PYRROLIDONE-CARBOXYLATE PEPTIDASE (5-OXOPROLYL-PEPTIDASE) (C15 exopeptidase) TERM 52 71597 - 71620 + T 73 -13.1 -3.21595 | opp_overlap 71595 GCAGCTGCACTAAGT GTCGGCGCG CATGTC CGCGCCGGC TTACTCCTGCAGGTT TERM 53 71637 - 71665 + T 100 -19.6 -4.25056 | gap 1 TACTCCTGCAGGTTG GCCGCGGC-CGCC TCAC GGCGCGCCGCGGC TTTCTTCATCGCATG RALTA_A0072 72871 - 71621 - | conserved hypothetical protein; putative TRANSMEMBRANE PROTEIN TERM 54 72554 - 72536 - G 74 -13.8 -3.26471 | GCACGCCGACAGCAA GGCGCCGG CCA CCAGCGCC ACCAGCGTGGCGCGT RALTA_A0073 73543 - 72890 - | hypothetical protein RALTA_A0074 74553 - 73609 - | putative ABC-type transporter, periplasmic component RALTA_A0075 75410 - 74550 - | putative ABC transporter, ATP binding component RALTA_A0076 76537 - 75407 - | conserved hypothetical protein, DUF140; putative TRANSMEMBRANE PROTEIN TERM 55 76617 - 76577 - H 74 -14.6 -2.53876 | gap 1 CTCGATTCTAAGCCA CGCGCCCCGCTGGCGCGAC CCGC GCCGCGCCC-CGGGGCATG CCCGGCAGCGCGGCG RALTA_A0077 76769 - 77602 + | BIOTIN-[ACETYL-COA-CARBOXYLASE] SYNTHETASE TERM 56 78290 - 78337 + G 73 -16.3 -2.62184 | gap 3 CGATCGAGCGCACCT GGC-GCGCGCTGGGCGAGCGCGGC GAT GCTGCGC--GCCCGCCGCGCTGCC TGCTGTCAGGCGGGG RALTA_A0078 77599 - 78450 + | TRANSCRIPTION REGULATION ACCESSORY FACTOR, similar to B.pertussis bvg RALTA_A0079 78484 - 78696 + | conserved hypothetical protein; PUTATIVE SIGNAL PEPTIDE PROTEIN (fragment) aut 79207 - 78713 - | aut gene, putative Cytidylyltransferase TERM 57 78793 - 78813 + g 75 -8.2 -4.16284 | CGTAGGCCTGGCCGC CCCAGCTG CGCAC CAGCCGGG TTTCTTCCAGCGTGT RALTA_A0081 79242 - 79505 + | hypothetical protein TERM 58 79529 - 79548 + T 100 -10.6 -5.58454 | opp_overlap 79530, overlap 79530 AAAGAAGACAAAAAA AGCCCCGC TTCG GCGGGGCA TTTTTTTGGTGTCCG TERM 59 79547 - 79530 - T 100 -14.1 -5.86465 | opp_overlap 79530 79529 AAGAAGACAAAAAAA GCCCCGC TTCG GCGGGGC ATTTTTTTGGTGTCC TERM 60 79530 - 79547 + T 86 -14.1 -3.93988 | opp_overlap 79530, overlap 79529 AAGAAGACAAAAAAA GCCCCGC TTCG GCGGGGC ATTTTTTTGGTGTCC RALTA_A0082 80438 - 79575 - | Putative ferritin/ribonucleotide reductase-like protein RALTA_A0083 81917 - 80640 - | conserved hypothetical protein; putative exported protein RALTA_A0084 82764 - 81955 - | hypothetical protein TERM 61 82431 - 82462 + g 75 -9.3 -4.18018 | gap 1 TGCGTTGCGGCGCCT CGGCGCTGGGCGCG TTGGC CGCGCGC-GCGACG TTTTCCATCGCCGAC TERM 62 82781 - 82829 + r 84 -16.6 -3.06796 | gap 1, opp_overlap 82764, overlap 82783 GTCGCGCGCTCCGTG TG-CGGCGCAGCCCGGTGCCCGG ACCT CCGGGAGCGCGGCTGCGCCGTCG TTACCTGAACTGAGG TERM 63 82783 - 82826 + r 100 -21.6 -2.75382 | opp_overlap 82764, overlap 82781 CGCGCGCTCCGTGTG CGGCGCAGCCCGGTGCCCGG ACCT CCGGGAGCGCGGCTGCGCCG TCGTTACCTGAACTG RALTA_A0085 83705 - 82830 - | putative ENOYL-COA HYDRATASE / isolerase RALTA_A0086 84762 - 83782 - | putative 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway): COG0179 RALTA_A0087 85837 - 84839 - | conserved hypothetical protein, UPF0065 RALTA_A0088 86017 - 86850 + | putative TRANSCRIPTIONal REGULATOR, IclR family TERM 64 86849 - 86905 + F 76 -9.4 -4.0616 | gap 3, opp_overlap 86837 86838 86855 86857, overlap 86852 86869 AAACCGGCCCCGCCT GAACCAGACGC-CCGGCG-C-GGCGCG GATCCG CGCGTCTGGCGCCGGCGCCGCTGGATC TTTGTGATTGCGCTG TERM 65 87239 - 87213 - g 79 -18.7 -2.52464 | GCGGCGGCGAAGGCA GCGCGGCAGCG CCCGC CGCCGCCGCGC CGGCTCCGTCCGGCG RALTA_A0089 86936 - 87916 + | hypothetical protein pcaD2 87967 - 88809 + | B-KETOADIPATE ENOL-LACTONE HYDROLASE (putative) TERM 66 89022 - 89010 - f 70 -10.5 -3.6149 | AGGCAAGAACCACAA GGGCG AGC CGCCC ATCCATGACGCCCAG RALTA_A0091 89048 - 89305 + | hypothetical protein TERM 67 89367 - 89382 + T 100 -11.8 -5.55855 | opp_overlap 89359 GCGACAACGAGCCAT GCCCGC TTCG GCGGGC TTTTGTTTTTTTGGC RALTA_A0092 89803 - 89411 - | conserved hypothetical protein, weak Rhodanese/Cell cycle control phosphatase domain TERM 68 90384 - 90347 - g 79 -15.6 -3.29471 | gap 1, overlap 90348 GGCGTACGAGATGAA CGTCG-AGGCCGCGCGC CTGGC GCGCGCTGCCTGCGACA AGTACAGCACGCCCG TERM 69 90383 - 90348 - g 73 -16.9 -2.57468 | gap 1, overlap 90347 GCGTACGAGATGAAC GTCG-AGGCCGCGCGC CTGGC GCGCGCTGCCTGCGAC AAGTACAGCACGCCC metHa 90000 - 91061 + | 5-METHYLTETRAHYDROFOLATE--HOMOCYSTEINE METHYLTRANSFERASE (METHIONINE SYNTHASE, VITAMIN-B12 DEPENDENT ISOZYME) PROTEIN TERM 70 92063 - 92035 - g 79 -2.9 -4.84262 | overlap 92036 GAAGAAGGAAGAAAA CCTGGCCTGGCGC GGC ACGCCCGAGCAGC CGGTGCCCGTGGGCG metHb 91079 - 93826 + | 5-METHYLTETRAHYDROFOLATE--HOMOCYSTEINE METHYLTRANSFERASE (METHIONINE SYNTHASE, VITAMIN-B12 DEPENDENT ISOZYME) PROTEIN TERM 71 93841 - 93880 + F 95 -20 -3.14132 | gap 1 ACCGGGTGCGACGCC AGGGC-GGCGGCGGTGCAT GCG GTGCGCCGCCGCCAGCCCG TTGATCCAGCAGGAA TERM 72 94329 - 94292 - g 82 -16.3 -3.28712 | gap 1, overlap 94325 CGGCGCGGCCGAGAA GGGCC-TGTCGACCGCCG GCG CGGCGACCGACAAGGGCC TGTCGGCAGCGGGCA TERM 73 94394 - 94358 - g 70 -12.9 -3.28924 | overlap 94325 94359 94391 94392 CACGGCGGCTGACAA GGGCCTGTCGACGGCGG GTG CCGCGGTCGACAAGGGC GTGGGCACCGCCGCC RALTA_A0095 94089 - 94550 + | hypothetical protein TERM 74 94648 - 94682 + F 100 -27.4 -4.11216 | opp_overlap 94653, overlap 94653 GCCTGACGCGCCGCA GCAAAGCGGGACGGAT CTT ATCCGTCCCGCTTTGC TTTTACGGCTGCCGA TERM 75 94677 - 94653 - f 100 -20.1 -3.72695 | opp_overlap 94648 94653 ACGCGCCGCAGCAAA GCGGGACGGAT CTT ATCCGTCCCGC TTTGCTTTTACGGCT TERM 76 94653 - 94677 + F 100 -20.1 -4.20136 | opp_overlap 94653, overlap 94648 ACGCGCCGCAGCAAA GCGGGACGGAT CTT ATCCGTCCCGC TTTGCTTTTACGGCT TERM 77 94702 - 94727 + F 72 -11.7 -3.28712 | overlap 94686 94703 ACGGCTGCCGAAGCG TGCCCGCGGCG TGCC CGCCGCCGGCC TTGTCGCCCCGCCGC TERM 78 94703 - 94726 + F 77 -15.2 -2.57132 | overlap 94702 94686 CGGCTGCCGAAGCGT GCCCGCGGCG TGCC CGCCGCCGGC CTTGTCGCCCCGCCG vsrD 94870 - 95502 + | RESPONSE REGULATOR, LuxR family RALTA_A0097 95558 - 95965 + | putative response regulator, CheY family vsrA 97373 - 95970 - | sensor histidine kinase RALTA_A0099 97695 - 97862 + | conserved hypothetical protein, DUF1328 TERM 79 97879 - 97864 - f 70 -11.8 -3.24188 | GCAGAGGACGATGAA CCCGGC GCAA GCCGGG CGACCCACTCGACCG RALTA_A0100 97915 - 98343 + | conserved hypothetical protein, DUF883 TERM 80 98386 - 98344 - T 74 -14.9 -2.50016 | gap 2, overlap 98343 98341 GCCGACGAGGAATAG CCGCGCGGATCCACGC--CAG AAC CTGATGCGGAGACCCGCGCGG GCTCCGCCGGAATTC TERM 81 98428 - 98456 + T 100 -8.8 -5.60993 | gap 1, overlap 98430 GAACCCTCGTCCGGA AGCCCGGCCGCCA GCTG TGGCG-CCGGGTG TTTTTTTGTCCGCAG TERM 82 98430 - 98454 + T 100 -13.6 -4.45201 | gap 1, overlap 98428 ACCCTCGTCCGGAAG CCCGGCCGCCA GCTG TGGCG-CCGGG TGTTTTTTTGTCCGC RALTA_A0101 98844 - 98521 - | hypothetical protein TERM 83 98885 - 98938 + H 71 -13.5 -2.65298 | opp_overlap 98869, overlap 98884 98924 GGTTAGCGGCGTCCC CGGGGCGGGAGGCCGCGCCGGTTCG GGCA CGGTCTGGCGCGGCCGCCGGAGCGG ATTGTGGTCCGTGGC TERM 84 99746 - 99730 - g 70 -12.3 -3.29144 | overlap 99741 GGAGGCCGCCTACAA CGGCGAT TAC ATCGCCG ACATCGCCGCCGACT TERM 85 100699 - 100738 + G 70 -12.1 -3.35679 | gap 1 GTTCCCCGACATGCT GGCCGCCGC-CGCGGC CGAGCTGGC GCCGCACGCGGTGGCC TTCTACCTGCGCGAC argS 99122 - 100909 + | ARGINYL-tRNA SYNTHETASE (ARGININE--tRNA LIGASE) PROTEIN TERM 86 100973 - 101003 + F 78 -15.4 -2.78596 | opp_overlap 100976, overlap 100975 GCCAGCCCCGGGGAC GAACCAGTGCGGCC GCG GGCGGCACTGGCTC TATAATCCCGGCATC TERM 87 101000 - 100976 - f 83 -15.7 -3.14211 | opp_overlap 100975 100973 AGCCCCGGGGACGAA CCAGTGCGGCC GCG GGCGGCACTGG CTCTATAATCCCGGC TERM 88 101430 - 101415 - g 72 -3.2 -4.67011 | overlap 101403 101426 AAGCCGATGGAAAAA CCGG TCGAAAAG CCGG CTGACAAGCCGCTCG TERM 89 101454 - 101426 - g 78 -9.5 -4.10855 | overlap 101415 101438 101453 AAAACCGGTCGAAAA GCCGGCTGACAAG CCG CTCGCCAGCAAGC CGGCCGAGAAGCCGG RALTA_A0103 101034 - 101750 + | conserved hypothetical protein; putative exported protein dsbA 101889 - 102524 + | periplasmic protein disulfide isomerase I TERM 90 102531 - 102556 + F 84 -8.2 -4.41548 | overlap 102550 AAGATGTAAATCCGA CTGGCGGCCT TCCTTT AAGCCGCCGG TTTTCTCCCCTCTCC RALTA_A0105 102641 - 103444 + | putative DEHYDROGENASE/REDUCTASE OXIDOREDUCTASE TERM 91 103793 - 103807 + G 72 -3.4 -4.57073 | overlap 103794 ACTTGCCGCTGTACC GGCTGC TGG GCGGCA TTTTTGGCCGCCATG RALTA_A0106 103447 - 104280 + | putative periplasmic metal binding protein RALTA_A0107 105503 - 104427 - | putative enzyme, Metallo-beta-lactamase superfamily TERM 92 105098 - 105070 - G 78 -13.8 -3.57792 | gap 1, overlap 105071 CCATGCAGTGCGAAA TGCGC-GGCGGCG GCTT CGCCGCCGGCGCT CGACCCGGCCCCGGT TERM 93 105097 - 105071 - G 78 -17.3 -2.74461 | gap 1, overlap 105070 CATGCAGTGCGAAAT GCGC-GGCGGCG GCTT CGCCGCCGGCGC TCGACCCGGCCCCGG RALTA_A0108 105710 - 106150 + | putative transcriptional regulator, MerR family TERM 94 106248 - 106212 - f 81 -11.6 -3.87979 | overlap 106214 TAAACGTAAATAGAA TAGCCGGACAGCGC GTTGGCCGT GCGCTGTCCGTCCA GACAGGCCCCACACC TERM 95 106246 - 106214 - f 74 -12 -3.50906 | overlap 106212 AACGTAAATAGAATA GCCGGACAGCGC GTTGGCCGT GCGCTGTCCGTC CAGACAGGCCCCACA TERM 96 106432 - 106465 + G 71 -3 -4.56597 | gap 1 GGTGGAGCTGGCCAT GCCGTGGTCCGAGGG CGTGA CCCA-GCAGCACGGC TTTTTCCACGGCGGC RALTA_A0109 106274 - 106750 + | putative Thioesterase/thiol ester dehydrase-isomerase RALTA_A0110 106826 - 108007 + | putative ACYL-COA DEHYDROGENASE OXIDOREDUCTASE TERM 97 109579 - 109603 + G 79 -15.7 -3.31144 | overlap 109582 GTACAAGAACTTCGG CGTCACGCGCC ATG GGCGCGTGGTG TTCTACGACTACGAC TERM 98 109582 - 109600 + G 73 -16 -2.53271 | overlap 109579 CAAGAACTTCGGCGT CACGCGCC ATG GGCGCGTG GTGTTCTACGACTAC TERM 99 109762 - 109800 + G 91 -4.3 -5.42259 | overlap 109768 CTTCCTGCTGGGCGA TCCGCGCGTCGGCGCGG CGTTC CTGCGGCACCATGCGGA TTTTTTTGACCCTGC aceK 108134 - 109981 + | isocitrate dehydrogenase kinase/phosphatase TERM 100 110602 - 110577 - g 74 -11.1 -3.71848 | GGCCGCCAGCAACAA CGACGAGCTGC ACGA GCAGCTGGCCG CGGCCTACCGCCAGT can1 109978 - 110649 + | carbonic anhydrase TERM 101 111514 - 111501 - g 72 -3.8 -4.59773 | overlap 111503 TTCCACGGCGAAAAA GCTG GGCCTG CAGC CGATCGCCCGCATGC RALTA_A0113 110704 - 111882 + | putative acetyl-CoA acetyltransferase with thiolase domain TERM 102 112136 - 112186 + G 77 -14.8 -3.14132 | gap 3 GTGCCGACGGCTGGC GCGTCATCGCGGCGGCGCGCACGCC CGAG GGCGTGGGCG-CGCTGC-A-GGCGC TTGGTGCCGAGGCGC TERM 103 112338 - 112287 - g 87 -17.2 -3.28712 | gap 1 CGTGGCGGTCTACAA CGCCGGCGTGATGGGGCCGCGCACC GAC AGCGCGCAGCCGG-TCACGCCGCCG GAGTTCGACCGGGTC RALTA_A0114 112057 - 112737 + | putative Short-chain dehydrogenase/reductase RALTA_A0115 112768 - 113898 + | putative ACYL COA DEHYDROGENASE OXIDOREDUCTASE PROTEIN TERM 104 114512 - 114545 + G 70 -13.1 -3.33261 | gap 1, overlap 114503 GGCCAAGGGTGTGTT CGGCTCGCCCTTCGTC ATC GTCGACGG-CGAGCCG TTCTGGGGCTTCGAC RALTA_A0116 114000 - 114656 + | putative thioredoxin oxidoreductase RALTA_A0117 114653 - 115339 + | putative haloacid dehalogenase-like hydrolase TERM 105 115692 - 115713 + G 83 -13 -4.03234 | opp_overlap 115674 AGGCGGGCGCGCCTG GCGGCTGC ATGAGC GCAGCCGC TTTGTGTGCGAGGCG RALTA_A0118 115336 - 115794 + | hypothetical protein TERM 106 115895 - 115922 + G 75 -10.5 -4.05926 | gap 1, opp_overlap 115882, overlap 115885 AACCGTCGGCGTGCA GCGCGGCCAGCC TTTGT GGCAGGC-GCGC TTTGTCGATTTCTTC RALTA_A0119 115791 - 116468 + | putative Glutathione S-transferase RALTA_A0120 116533 - 118140 + | putative PROPIONYL-COA CARBOXYLASE RALTA_A0121 118172 - 119068 + | putative lipoprotein RALTA_A0122 119121 - 119909 + | putative ENOYL-COA HYDRATASE PROTEIN bioA 120150 - 121568 + | 7,8-diaminopelargonic acid synthetase, PLP-dependent TERM 107 121623 - 121578 - g 74 -13.2 -3.28745 | gap 1, overlap 121573 121581 GCTTGAACAACTGAA GCAGGCCGCGGAGCAGCGCCA CGCGC TGGCGCTGACGCGCCGCC-GC CGCATCGCCCACACC TERM 108 121621 - 121581 - g 70 -14.6 -2.81969 | overlap 121578 121573 TGAACAACTGAAGCA GGCCGCGGAGCAGCGCCA CGCGC TGGCGCTGACGCGCCGCC GCCGCATCGCCCACA TERM 109 122295 - 122316 + G 86 -13.7 -3.85698 | gap 1 CGGCACGCTCGGCAA GGCTGCCGGC GTG GCCGGC-GCC TTTGTCGCCGCGCAC bioF 121558 - 122772 + | 7-keto-8-aminopelargonic acid synthetase bioD 122769 - 123524 + | dethiobiotin synthetase bioB 123544 - 124566 + | biotin synthetase TERM 110 124915 - 124939 + G 70 -9.1 -3.85698 | opp_overlap 124904, overlap 124904 CGAAGCCTTCGCCGA GGCCTGCGCCG CGG CGGGGCTGGTC TTTATCGGCCCGCCG TERM 111 125413 - 125387 - g 85 -17.2 -3.19463 | GGCATGACCGAGGAA CGCCGCCGCGCC ATG GGCGAAGCGGCG GTGGCCGCGGCCAAG RALTA_A0127 124637 - 126655 + | putative Methylcrotonoyl-CoA carboxylase alpha subunit RALTA_A0128 126848 - 127789 + | putative 2-ketoacid reductase RALTA_A0129 127839 - 128774 + | HYDROXYMETHYLGLUTARYL-COA LYASE PROTEIN RALTA_A0130 128800 - 129318 + | conserved hypothetical protein; YbaK/prolyl-tRNA synthetase associated region RALTA_A0131 129315 - 129743 + | hypothetical protein RALTA_A0132 129744 - 130007 + | conserved hypothetical protein; putative exported protein RALTA_A0133 130040 - 130933 + | putative Metallo-hydrolase/oxidoreductase, BETA LACTAMASE superfamily RALTA_A0134 133345 - 131150 - | putative TonB-dependent receptor TERM 112 131453 - 131480 + g 72 -9 -4.07568 | overlap 131454 GCGCAGCGGTGCGAG GCGCGGCAGCGG TTCG CCGGTGTCGCGG TTTTCGCCGCGCACG RALTA_A0135 133916 - 133503 - | hypothetical protein RALTA_A0136 135195 - 133906 - | conserved hypothetical protein, similar to E. coli yjiA and P.chlororaphis P47K TERM 113 135385 - 135366 - R 100 -16.4 -4.68908 | opp_overlap 135362 135362 GGGACCCAAAACAAA CGGCCCGG GGAC CCGGGCCG TCAATGTTGCTCACG RALTA_A0137 136116 - 135430 - | hypothetical protein TERM 114 136061 - 136088 + g 81 -7.7 -4.56883 | GCCTTGAGCGTCTCT GCCGCGGCA CTACCAGTCT TGCTGCGGC TTTCTTTGGTCTTCG TERM 115 136309 - 136299 - R 78 -6.8 -4.56597 | opp_overlap 136270 136270 CGGTGGCGGGAAAAA GGTG CGC CACC GGTATCAAATCCGGC RALTA_A0138 137557 - 136460 - | conserved hypothetical protein, similar to E. coli yjiA and P.chlororaphis P47K RALTA_A0139 138107 - 137586 - | putative transcriptional regulator, FUR family TERM 116 137722 - 137664 - G 78 -13.2 -3.60098 | overlap 137665 ATGTTCGATGGCAAA GCCGC-TGGGC-ACGCGCGGCGCCGCCGGC TGC GCCGGCG-CGCCG-GCATCGTCCAGGCAGA AGGTGCGGTCGCAGC TERM 117 137721 - 137665 - G 74 -16.7 -2.75844 | overlap 137664 TGTTCGATGGCAAAG CCGC-TGGGC-ACGCGCGGCGCCGCCGGC TGC GCCGGCG-CGCCG-GCATCGTCCAGGCAG AAGGTGCGGTCGCAG TERM 118 138732 - 138742 + G 81 -2.4 -4.96848 | GAGACCTTGATCAAC GCCG AGC CGGA TTTTTATATCCAGAA dehH 138213 - 139112 + | Haloacetate dehalogenase TERM 119 139635 - 139601 - g 75 -8.4 -4.18494 | overlap 139602 CATCGTCATCGAAAA CCTGGGCGGCGCCGGT GGC ACCATCGGCGCCAAGA AGGTGGCCCAGGCCA RALTA_A0141 139395 - 140381 + | conserved hypothetical protein, UPF0065 TERM 120 140404 - 140427 + F 77 -13.8 -3.28712 | overlap 140409 GAGTGATCCATGCGG CGCGCTGGCC TGCC GGCCGGTGCG TTGTGCCGAAGGGCC TERM 121 140438 - 140460 + F 100 -19.2 -5.27938 | overlap 140409 GTGCGTTGTGCCGAA GGGCCATGCG TTG CGCATGGCCC TTTTTGTTTGCGGGT TERM 122 140471 - 140487 + F 75 -13.7 -3.02144 | overlap 140481 GGCCCTTTTTGTTTG CGGGTCG GCG CGACCCG TGTTGGCGGGCGTCC hslV 140604 - 141140 + | peptidase component of the HslUV protease hslU 141209 - 142540 + | ATPase component of the HslUV protease, molecular chaperone TERM 123 142564 - 142581 + F 100 -12.7 -5.22312 | opp_overlap 142564 GCATGGCAAGCGAAA GGCGCAC CACG GTGCGCC TTTTTTCATGTCCGT TERM 124 142581 - 142564 - f 81 -12.7 -3.76125 | opp_overlap 142564 GCATGGCAAGCGAAA GGCGCAC CACG GTGCGCC TTTTTTCATGTCCGT RALTA_A0144 142752 - 143045 + | putative membrane lipoprotein TERM 125 143074 - 143093 + T 100 -16.4 -4.27316 | opp_overlap 143074 CTCGCCAATGCAAAA GGCCGCGC ACGT GCGCGGCC TTTTGCATTGGGGGG TERM 126 143093 - 143074 - T 100 -16.4 -4.27316 | opp_overlap 143074 CTCGCCAATGCAAAA GGCCGCGC ACGT GCGCGGCC TTTTGCATTGGGGGG RALTA_A0145 143734 - 143123 - | putative response regulator, RegA/PrrA/ActR family (CheY-like receiver domain + Fis-type HTH domain) RALTA_A0146 145125 - 143731 - | putative sensor histidine kinase TERM 127 143846 - 143870 + g 77 -11.3 -3.86897 | opp_overlap 143844, overlap 143847 TCATGCCAGGCAAGT TCGCCGCCCAT CTG ACGGGCGGCGC TTTGTGCCAGGTACA TERM 128 143847 - 143869 + g 72 -14.8 -2.91924 | opp_overlap 143844, overlap 143846 CATGCCAGGCAAGTT CGCCGCCCAT CTG ACGGGCGGCG CTTTGTGCCAGGTAC TERM 129 144021 - 143991 - G 72 -14.6 -2.93164 | opp_overlap 143960, overlap 143986 CGACACGGAACGACA GCCACGGCGCGGTG TTG CCCGGCGCCATGGC GATCTGCAGCTGCAG RALTA_A0147 145312 - 145803 + | conserved hypothetical protein, DUF461; putative TRANSMEMBRANE PROTEIN RALTA_A0148 146764 - 145829 - | putative transcriptional regulator, LysR family RALTA_A0150 147621 - 147361 - | hypothetical protein RALTA_A0149 146858 - 147418 + | conserved hypothetical protein, DUF606; putative membrane protein TERM 130 147790 - 147823 + FH 85 -10.2 -4.32177 | gap 1, overlap 147805 147810 AGCCGGTTCACCGCG CCGCGTTGGGC-CGG CGCGC TCGCGCCCCGCGCGG TTTCTTGTAAAATCG TERM 131 148135 - 148116 - g 76 -2.8 -4.69053 | gap 1, overlap 148118 148125 CATGACCGAAGAAAA GCTC-AAGC ACG GCTTCGCGC GCGACGTGATCCTGC argB 147949 - 148875 + | ACETYLGLUTAMATE KINASE (putative precursor) RALTA_A0152 148939 - 149898 + | hypothetical protein TERM 132 150305 - 150287 - g 91 -2.2 -5.40072 | overlap 150288 150289 CTTCGCGGAAAAAAA CCCGGGCA TGA CGCGCGTG CTGACCGGCGAGGCG RALTA_A0153 149895 - 150569 + | putative transcriptional regulator of dUTPase subunit (TetR/AcrR family); similar to E.coli ttk metX 150845 - 152026 + | HOMOSERINE O-ACETYLTRANSFERASE PROTEIN TERM 133 152348 - 152330 - g 70 -12.4 -3.26164 | opp_overlap 152339, overlap 152328 152331 AGACCATCCACAACA CCGCGCAG GTG CTGCGCGA CACGCTGCGGGTGGG metW 152023 - 152634 + | S-adenosyl-L-methionine-dependent methyltransferase RALTA_A0156 153076 - 152648 - | putative antibiotic resistance protein; GlyoxalaseI/dioxygenase domain TERM 134 152682 - 152708 + g 70 -13 -3.25223 | opp_overlap 152641 GCCCGGTACTGCGCC GCGAATTCCGCC GAC GGCGGGATTGGC TTGATGATGTCGATC TERM 135 153035 - 153017 - G 76 -13.8 -3.48395 | ATGCTGTTGATAGAA CGCGGCCG TCC CGGCCACG TCGGCGGTCATGATG TERM 136 153145 - 153098 - H 73 -8.6 -4.07687 | opp_overlap 153100, overlap 153100 153131 153133 ACTCCTGGTTTAAAA TACATGCAGTCTGTATGTAAAT CCAT ATTAAGATACAGGCTGCATGTT TGCAAGGAGCCCGAA TERM 137 153143 - 153100 - H 73 -11.2 -3.63744 | opp_overlap 153100, overlap 153098 153131 153133 TCCTGGTTTAAAATA CATGCAGTCTGTATGTAAAT CCAT ATTAAGATACAGGCTGCATG TTTGCAAGGAGCCCG TERM 138 153100 - 153143 + H 79 -13.4 -3.53012 | opp_overlap 153100 153098 153131 153133 TCCTGGTTTAAAATA CATGCAGTCTGTATGTAAAT CCAT ATTAAGATACAGGCTGCATG TTTGCAAGGAGCCCG RALTA_A0157 153141 - 153728 + | putative TRANSCRIPTIONal REGULATOR, TetR family RALTA_A0158 154664 - 153750 - | putative transcriptional regulator, LysR family RALTA_A0159 154776 - 155663 + | conserved hypothetical protein, DUF6; putative membrane protein TERM 139 156330 - 156365 + G 71 -11.8 -3.54424 | gap 1, overlap 156331 156358 GACAGCCTGACCCAG TTCTGGC-TGCGCGACG CGC CGGCGCGCACGCCGGAC TTTGCCGCGGTCGCG TERM 140 156331 - 156364 + G 70 -15.3 -2.72511 | gap 1, overlap 156330 156358 ACAGCCTGACCCAGT TCTGGC-TGCGCGACG CGC CGGCGCGCACGCCGGA CTTTGCCGCGGTCGC RALTA_A0160 155784 - 156632 + | hypothetical protein ampG 157902 - 156643 - | muropeptide transport protein (MFS family) TERM 141 157779 - 157750 - G 81 -4.1 -4.88736 | CACCAGCGAGAAAAA GCCGATGGTCTTG ATGT CCAGCCCTTCGAC CGTCATCCACGCCTG TERM 142 157917 - 157948 + H 77 -13.6 -3.38812 | overlap 157915 157919 157920 TGGATGGGGCAGCCG TGTGCCGCCCGCGC GGCT GCGCGGGCGCCGTG TATTATTGCACCACC TERM 143 157919 - 157946 + H 88 -16.2 -3.26444 | overlap 157917 157915 157920 GATGGGGCAGCCGTG TGCCGCCCGCGC GGCT GCGCGGGCGCCG TGTATTATTGCACCA TERM 144 157920 - 157945 + H 83 -17.5 -2.55545 | overlap 157919 157917 157915 ATGGGGCAGCCGTGT GCCGCCCGCGC GGCT GCGCGGGCGCC GTGTATTATTGCACC RALTA_A0162 158003 - 158971 + | putative membrane-associated zinc metalloprotease, Peptidase M48, Ste24p TERM 145 159300 - 159332 + G 82 -11.3 -4.15222 | gap 1, opp_overlap 159321 CGGCTGCCGGCGCTG GCG-GGGCCGGC AGCGGACCAA GCCGGCCCGCGC TTTCTTGCCGCCAAT RALTA_A0163 159063 - 161141 + | putative Peptidase, S8 family (subtilisin) TERM 146 161169 - 161183 + T 100 -12.8 -5.21709 | opp_overlap 161169 AGGTGCAACAAAAAA GCCGGC AGT GCCGGC TTTTTTGATGTGCGG TERM 147 161183 - 161169 - T 100 -12.8 -5.45652 | opp_overlap 161169 AGGTGCAACAAAAAA GCCGGC AGT GCCGGC TTTTTTGATGTGCGG argC2 162158 - 161211 - | N-ACETYL-GAMMA-GLUTAMYL-PHOSPHATE REDUCTASE (N-acetyl-glutamate semialdehyde dehydrogenase) (NAGSA dehydrogenase) RALTA_A0165 162330 - 162626 + | conserved hypothetical protein; putative exported protein RALTA_A0166 162659 - 163057 + | putative transcriptional regulator, HTH cro/C1-type DNA-binding domain RALTA_A0167 163842 - 163066 - | putative EXODEOXYRIBONUCLEASE III/endonuclease/phosphatase TERM 148 163165 - 163198 + g 72 -3.7 -4.62069 | GTCGGCGATCTTCGG CGTGGCGAGGTGG TAGTCGAT CCGCCATCCCACG TTTTTCGCATAGGCC pyrE 163870 - 164565 + | orotate phosphoribosyltransferase RALTA_A0169 164686 - 165963 + | putative Patatin-like phospholipase RALTA_A0170 166794 - 165985 - | conserved hypothetical protein; putative polyphosphate kinase TERM 149 166242 - 166261 + g 79 -4.8 -4.71426 | overlap 166244 TTTCCGGGTCGGCCA GGCGCGCC TCGA GCCGCGAC TTTTGTTCGTCGCGC dapF 167757 - 166891 - | diaminopimelate epimerase RALTA_A0172 168703 - 167810 - | putative lipid A biosynthesis acyltransferase RALTA_A0173 169614 - 168700 - | putative lipid A biosynthesis acyltransferase TERM 150 169131 - 169184 + g 82 -3.6 -5.09225 | overlap 169131 169146 GTGCCTTGACCAGCA TGCGCACGCCGCGCGGCGTGGCCG GCGCCA TGTGCATGTTGGGCCGGGTGCGCA TTTTTTCGATCCAGT TERM 151 170660 - 170684 + G 79 -14.9 -3.28712 | CGACACCTACGGCGG CGCCTCGCCGC ACG GCGGCGGCGCG TTCTCGGGCAAGGAC TERM 152 171047 - 171023 - g 70 -12.7 -3.3785 | GGAAGCCACCGACAA GGCGGCTGCGC TGC GCGCCGCGGCC GGCCTGTAAGCGCCG metK 169845 - 171056 + | methionine adenosyltransferase 1 (AdoMet synthetase) TERM 153 171091 - 171118 + F 100 -16.2 -5.47821 | opp_overlap 171090 171091 AATCCTGACGACAAG CCCCGCCGGCCC GCAA GGGCTCGCGGGG TTTTTTTGCGTGGCT TERM 154 171118 - 171091 - f 71 -14 -2.64595 | opp_overlap 171091, overlap 171090 AATCCTGACGACAAG CCCCGCCGGCCC GCAA GGGCTCGCGGGG TTTTTTTGCGTGGCT TERM 155 171548 - 171511 - g 76 -14.2 -3.46509 | gap 2 GTCCAAGAACATCAA CCTGCGTGCCGACGACAC CGCG GTG-CG-CGGCGCGCAGG GCAGCCCGCAGGACC RALTA_A0175 171260 - 172201 + | hypothetical protein RALTA_A0176 173628 - 172225 - | coniferyl aldehyde dehydrogenase (CALDH) TERM 156 173173 - 173189 + g 74 -15.1 -3.06815 | opp_overlap 173172 CAGCCGCGCGAACAG CGCCGCG AAG CGCGGCG TGTATTCCGACAGCT RALTA_A0177 173843 - 175606 + | soluble choline dehydrogenase aidB 177273 - 175603 - | isovaleryl CoA dehydrogenase TERM 157 176954 - 176914 - G 78 -17.5 -2.77899 | gap 1, overlap 176911 TGCCTGCAGGAAGTA CCCGGCCGTGCGCGCGGC CCAGGC GCC-CGCGCGCGGCTGGG CGAAGGGCAGCGCCT TERM 158 178222 - 178186 - g 73 -13 -3.40403 | gap 1, overlap 178198 178199 GGCCCTGTACGACAA GCCCGAATACAAGGCGC TGCT GCGCCA-GCATCCGGGC AACGCGCTGGGCGCG TERM 159 178471 - 178435 - g 75 -9.3 -4.20696 | CGAGGAAGTGGAAAA GATGGTGTGGTCGATCC GCT GGGGCGCCGACACCATC ATGGACCTGTCGACC thiC 177677 - 179557 + | thiamin (pyrimidine moiety) biosynthesis protein TERM 160 179623 - 179591 - f 80 -16.3 -2.57013 | overlap 179573 179587 179615 GCCGAAGTCAAGGCA GGACGGGCATGGCCT CGC AAGCCATGCCCGCGC AAGATCCGCCGCCGC TERM 161 179661 - 179628 - f 75 -13.7 -3.01924 | overlap 179615 CATGCCCGCGCAAGA TCCGCCGCCGCGCAG CGCC CCGCGCGGCGGCACC GATTACAAGGAGGCC TERM 162 179703 - 179673 - f 70 -12.5 -2.86747 | gap 1, overlap 179670 CACCGATTACAAGGA GGCCGGACGCGGCC GCAT GGC-GCGCCCGGCA CAACACCCTCATGAC TERM 163 180220 - 180196 - g 70 -12.7 -3.31263 | opp_overlap 180198 180207, overlap 180164 AGGCCAGCTCGACAA CCGCGGCGCGC TGC GCGCGCTGCTG TCGTGCGCGGTCAGC TERM 164 180198 - 180218 + G 74 -16.1 -2.78816 | opp_overlap 180196, overlap 180207 GCCAGCTCGACAACC GCGGCGCGC TGC GCGCGCTGC TGTCGTGCGCGGTCA thiO 179714 - 180904 + | D-AMINO ACID OXIDASE FLAVOPROTEIN OXIDOREDUCTASE; thiamine biosynthesis thiS 180917 - 181114 + | sulfur transfer protein thiG 181118 - 181954 + | thiamin biosynthesis ThiGH complex subunit TERM 165 181968 - 181936 - f 84 -15.5 -3.31144 | CTGGCACGCCGACAA CACGGAGCAGCGCGC ATG ACCCGCCGCCCCGTG CACGTCCCCAGCGAC thiE 181951 - 183084 + | THIAMINE-PHOSPHATE PYROPHOSPHORYLASE RALTA_A0184 183092 - 183598 + | putative acetyltransferase TERM 166 184096 - 184127 + G 74 -13.6 -3.28712 | AGCTGACGCTGGAAG CGCGCTGCCTGCGC CGCG GCGCGCGCATCGCG TTCTGCGAAGGAGAA TERM 167 184190 - 184148 - g 70 -12.5 -3.2653 | overlap 184151 CGAAGGAGAAGTGAA GGACGCGGCCGGCACCGTG GTGTG CGTGGCGCGGGCCGCGTTC AAGCTGGTGCCGCTG RALTA_A0185 183774 - 184223 + | putative thioesterase TERM 168 184269 - 184239 - T 91 -9.7 -4.56597 | gap 1, overlap 184240 184241 TCCCTGCCTGAAAAA CCCCGGCCGCT-CA GTCC TGCAGCGGCCGGTA CACCTGTTCGAACCT TERM 169 184267 - 184241 - T 74 -14.5 -2.60032 | gap 1, overlap 184240 184239 CCTGCCTGAAAAACC CCGGCCGCT-CA GTCC TGCAGCGGCCGG TACACCTGTTCGAAC RALTA_A0186 184683 - 184249 - | hypothetical protein TERM 170 184287 - 184318 + g 78 -15.9 -3.08679 | CCTGTTCGAACCTCG CGCGCTCGGTGAT GCCATA GTCACCGGGCGCG TATTGCATCAGCCAG thiD 185573 - 184692 - | bifunctional hydroxy-methylpyrimidine kinase and hydroxy-phosphomethylpyrimidine kinase ahcY 185799 - 187217 + | ADENOSYLHOMOCYSTEINASE (S-ADENOSYL-L-HOMOCYSTEINE HYDROLASE) TERM 171 187267 - 187238 - f 100 -23.7 -3.18912 | GCAGCGAGGTAGCAA CTCCCCTCTCCCG CTTG CGGGAGAGGGGAG AAAACCACCAACCAA RALTA_A0189 187292 - 187642 + | conserved hypothetical protein; putative TRANSMEMBRANE PROTEIN metF 187683 - 188513 + | 5,10-methylenetetrahydrofolate reductase RALTA_A0191 188521 - 188880 + | conserved hypothetical protein; TfoX N-terminal domain TERM 172 189615 - 189635 + G 73 -8.1 -4.24204 | overlap 189617 TTCGCGCGGCTGGAC CTGGCGGGC AGC GCCCGGCCG TTTTCGCTGTGCCTG RALTA_A0192 189087 - 189845 + | conserved hypothetical protein, DUF82 RALTA_A0193 190429 - 189842 - | Putative 5-formyltetrahydrofolate cyclo-ligase RALTA_A0194 190534 - 192486 + | putative SOLUBLE LYTIC MUREIN TRANSGLYCOSYLASE PRECURSOR TRANSMEMBRANE PROTEIN TERM 173 192545 - 192588 + F 76 -9.5 -4.00042 | gap 2, overlap 192546 CGACGGGCCTGCGGC GTG-GCGCCGCGG-GCCCGGG CTGG CGCGGGTGCCGCGGCGTGCAG TTCTTTCCTGGCACG TERM 174 192546 - 192587 + F 71 -13 -2.99704 | gap 2, overlap 192545 GACGGGCCTGCGGCG TG-GCGCCGCGG-GCCCGGG CTGG CGCGGGTGCCGCGGCGTGCA GTTCTTTCCTGGCAC RALTA_A0195 192612 - 193634 + | putative NADH dehydrogenase RALTA_A0196 193833 - 194531 + | putative Glutathione S-transferase TERM 175 194576 - 194544 - f 76 -14.1 -3.12803 | gap 1, overlap 194542 TAGCCATAGCGAACA GCGCCGGCGGCGGG TACCGC CCCGT-GCCGGCGC ATGAAAAGGCCACAA TERM 176 195333 - 195352 + G 74 -12.8 -3.54741 | overlap 195313 GCGCCGCGGCGCTGG GCGCGCCG CTGC CGGTGCGC TTTGCCGCGCTGGTG cca 194594 - 195841 + | tRNA nucleotidyl transferase RALTA_A0198 196082 - 195888 - | hypothetical protein RALTA_A0199 197310 - 196099 - | conserved hypothetical protein, DUF185; putative exported protein TERM 177 196550 - 196534 - G 84 -7.9 -4.7373 | overlap 196535 196536 GTAGTCGATGAAAAA TGCCGCG CCG CGCGCCA GCATGGCGCCGACCG RALTA_A0200 197326 - 198183 + | putative deshydrogenase TERM 178 198505 - 198475 - g 74 -14.6 -3.04263 | ACTTCATGCGCAACA CCGTGGCCGCGCGC ATG GCGCAGGGCCACGT GCACCTGCAGGAAAC RALTA_A0201 198255 - 198656 + | putative Dihydroneopterin aldolase TERM 179 198755 - 198704 - f 72 -3.8 -4.54727 | gap 3, opp_overlap 198707 GCGCCTAAAGTAAAA TGTTGCCCCTCGCGCCGCGCCGG CCATTCCAT CCGGCG-GGCGCCACG--CAACA GGATGCTCCATGAGC RALTA_A0202 198765 - 199691 + | putative ATP pyrophosphatase TERM 180 199714 - 199731 + T 100 -14.1 -4.72272 | CGGCGGATGCCAGGA CGCCCGC TCGC GCGGGCG TTTTTCATGGCACCG RALTA_A0203 200876 - 199761 - | hypothetical protein TERM 181 200501 - 200481 - G 72 -8.2 -3.96216 | overlap 200482 GTGCCAGGCAAAGAA GCGCGCGA TTGCC TCGCGCGT GAGCGGTTCCTGGGC glmU 200891 - 202255 + | bifunctional: N-acetyl glucosamine-1-phosphate uridyltransferase (N-terminal); glucosamine-1-phosphate acetyl transferase (C-terminal) glmS 202346 - 204184 + | L-glutamine:D-fructose-6-phosphate aminotransferase RALTA_A0206 205184 - 204237 - | putative transcriptional regulator, LysR family RALTA_A0207 205290 - 206282 + | conserved hypothetical protein, UPF0065 TERM 182 206309 - 206338 + F 100 -24.3 -4.73614 | GGTACAGGCCCATCG CGGGCGCCGTGGC GAAG GCCGCGGCGCCCG TTTCTTTTGATGGTC bfr2 206591 - 207070 + | bacterioferritin, iron storage homoprotein RALTA_A0209 207557 - 208000 + | putative GCN5-related N-acetyltransferase RALTA_A0210 209038 - 208061 - | putative cation efflux protein TERM 183 208821 - 208787 - G 71 -9.9 -3.75153 | overlap 208788 GGTGCCGAAGGCAAA GCGCCAGTCG-CCGGCG TAG CGCCGGGCGGC-GGCGT AGGCGAAGGCGGACA RALTA_A0211 210930 - 209470 - | putative transcriptional regulator, GntR family; C-term aminotransferase motif TERM 184 209826 - 209809 - G 74 -14.1 -3.28924 | CAGCCGTTCGGACAA GGCCGCC ACGT GGCGGCC GTAGTGGCCGCTGGT TERM 185 211640 - 211670 + G 73 -10.3 -3.85698 | gap 1, opp_overlap 211624, overlap 211641 CGCGCTGGCGTATCA CCGCGCGCGC-GGC GAAG GCCAGCGCACGCGC TTTATCGGCCGCGAG RALTA_A0212 211254 - 212585 + | Omega-amino acid--pyruvate aminotransferase (Omega-APT) (Beta-alanine--pyruvate aminotransferase) TERM 186 212738 - 212724 - g 72 -4.9 -4.40804 | opp_overlap 212732, overlap 212725 GAGCATCGCAGAAAA CCGGC AACTG GCCGA AGTCCATCATTTCAT RALTA_A0213 212707 - 214224 + | methylmalonate-semialdehyde dehydrogenase (acylating) RALTA_A0214 214248 - 214598 + | putative Glyoxalase/dioxygenase RALTA_A0215 214775 - 216172 + | Cationic amino acid transporter TERM 187 216201 - 216163 - T 75 -14.5 -2.82623 | gap 1, opp_overlap 216180 216185, overlap 216160 CGTGCTGCATAACCA CGGCGGCTGAGCGTCAGC GCGC GCCG-CGCTCCGCGGCCG CCTTCATGAACGCCA RALTA_A0216 217585 - 216176 - | putative transcriptional regulator, GntR family; C-term aminotransferase motif RALTA_A0217 217788 - 218135 + | hypothetical protein TERM 188 218187 - 218169 - f 91 -16 -3.5393 | opp_overlap 218169 AGGATGCGTCGCAAA GGCCACCG ACA CGGTGGCC TTTTGTTTGTCCGTA TERM 189 218169 - 218187 + F 100 -16 -5.0065 | opp_overlap 218169 AGGATGCGTCGCAAA GGCCACCG ACA CGGTGGCC TTTTGTTTGTCCGTA TERM 190 218985 - 218975 - g 72 -8.2 -4.07885 | CACCGCGCTCGAAAA CGGC AAG GCCG ATGCGGCGCTGATGG RALTA_A0218 218400 - 221690 + | METHYLMALONYL-COA MUTASE RALTA_A0219 221835 - 222272 + | putative ribonucleoside phosphate hydrolase, Histidine triad (HIT) protein RALTA_A0220 222317 - 223171 + | 3-HYDROXYBUTYRYL-COA DEHYDROGENASE TERM 191 223219 - 223251 + F 100 -13.4 -4.40173 | gap 1 GTCTGGTCTGAGCGA GGCCGGCGGCTGGAC TTCG GGTCAGC-GCCGGCC TTTTCCGTTTGTGGT RALTA_A0221 223464 - 223844 + | hypothetical protein RALTA_A0223 224330 - 223884 - | hypothetical protein TERM 192 224280 - 224307 + g 70 -8.4 -3.9243 | gap 1 GCGATACGCCCGCAG GGTG-TCGGCGTC GAT GGCGCTGGCCACC TTATTTCCCACCTTA RALTA_A0224 225000 - 224332 - | putative transcriptional regulator, crp family RALTA_A0225 225281 - 227239 + | putative AMP-dependent synthetase and ligase RALTA_A0226 227269 - 228231 + | putative transport protein (ABC superfamily, atp_bind) RALTA_A0227 228243 - 229157 + | putative branched-chain amino acid transport system permease, membrane component RALTA_A0228 229184 - 230260 + | putative branched-chain amino acid transport system permease, membrane component TERM 193 230625 - 230615 - g 70 -8.2 -3.8512 | GACCGAGTACAACAA CGCC AAG GGCG TGGAGTGCTATGAGC RALTA_A0229 230331 - 231689 + | putative branched amino acid transport system permease, periplasmic binding component TERM 194 231753 - 231701 - f 89 -17.2 -3.14931 | opp_overlap 231697, overlap 231746 CTGAGGCCGTACCAA TCCCGATTGGTTT-CTCCCCTCTCCC TCT GGGAGAGGGGAGCAAACCG-CCGCGA CTGTGAAGTCGCAAG TERM 195 232166 - 232108 - g 95 -15.2 -4.28994 | gap 1 GACCATCGAGGAAAA CCTGCTCACCG-GCGCCTACACGCGCG GCCTGT CGCGCGGCCAGACGCGCGACGAGCTGG AGAAGATCTACGAGT RALTA_A0230 231707 - 232612 + | putative branched-chain amino acid transport system permease, ATP_binding component RALTA_A0231 232786 - 234036 + | putative phenylacetate-CoA ligase RALTA_A0232 234721 - 234257 - | conserved hypothetical protein, DUF454; putative membrane component TERM 196 234729 - 234713 - G 91 -15.1 -3.86822 | CAATGGTCGGACAAA GGGCCGC AAC GCGGCCC GGTAAGGTATCGGTC RALTA_A0233 235720 - 234743 - | conserved hypothetical protein, Putative 2-nitropropane dioxygenase creC 237288 - 235846 - | sensory histidine kinase TERM 197 236470 - 236440 - G 72 -13.3 -3.14132 | gap 2, opp_overlap 236438 236440 236441 CTCTTCCTGCAGCAA CTCCGCCGCGCCGCC GAT GGCGGC-CAGCGG-G CTCTTCATCTCGTGC TERM 198 236874 - 236896 + g 81 -18.4 -2.70932 | overlap 236892 CCTCGTCGGCGGGGT CGGCGCGCGT GCT GCGCGCGCCG TACTTGCCGCGCAGC creB 237993 - 237298 - | response regulator, CheY family RALTA_A0236 239136 - 238003 - | putative Flavoprotein monooxygenase TERM 199 238699 - 238644 - G 81 -8 -4.54047 | gap 1 CCACGCCATACAAAA CGCTGTGCACACGCCCGAGCCCGGCGC ATT GCGCCACGCGCGACTGCGCGC-CATCG GCGCCGACCAGGTAG TERM 200 239269 - 239250 - R 100 -10.6 -5.53991 | opp_overlap 239249, overlap 239251 GACGCAGCAAAAAAA CGCCCCGC ATGC GCGGGGCC ATCAATTACCACGAA TERM 201 239268 - 239251 - R 86 -14.1 -3.9131 | opp_overlap 239249, overlap 239250 ACGCAGCAAAAAAAC GCCCCGC ATGC GCGGGGC CATCAATTACCACGA dctD1 240724 - 239387 - | transcriptional response regulator, C4-DICARBOXYLATE TRANSPORT RESPONSE REGULATOR dctB1 242718 - 240721 - | sensor histiidne kinase, transcriptional regulator of C4-DICARBOXYLATE TRANSPORT TERM 202 241834 - 241880 + g 79 -18.6 -2.62184 | GGTGGTGCGGCCAGC CGCGGCCTCGTCGCGCACGC GCACCAG GCGCGCGCCACGGGGCAGCG TGGTGTCCGCCAGCC TERM 203 242787 - 242751 - R 90 -20.2 -2.78384 | gap 2 GTCGCGCCGATGATA CCCGCTGGCGCGCGGCCG GGG CAGCCGCGCG-C-GCGGG GGCGGCCGCAGGTGC dctA1 244123 - 242822 - | citrate and C4-dicarboxylic acids transport protein (DAACS family) TERM 204 243683 - 243650 - G 78 -13.9 -3.61398 | gap 1 CGCGGCGCCGAAGAA CAGCGACA-CCAGCAG GAT CTGCAGGATGTCGCCG TTGGCGAAGGCGCTG RALTA_A0242 244514 - 244834 + | conserved hypothetical protein; putative FERREDOXIN 2FE-2S TERM 205 244903 - 244921 + F 100 -7.3 -5.54079 | CGATGCCAGACCCCG CCGCCCG CACGC CGGACGG TTTTTTCATTTTTGC TERM 206 245280 - 245244 - g 82 -15.2 -3.44051 | gap 1, overlap 245262 CGGCGAGCATGACAA CGGCATCGGCGAACAGG ACGA CCTGCTCGCCG-TGGCG GCCTGGATGCGCCAG RALTA_A0243 245002 - 245643 + | putative hydrolase dacC 245706 - 246905 + | D-alanyl-D-alanine carboxypeptidase; penicillin-binding protein 6a RALTA_A0245 246966 - 247274 + | conserved hypothetical protein, DUF493 RALTA_A0246 247444 - 248682 + | putative S-adenosyl-L-methionine-dependent methyltransferase RALTA_A0247 250806 - 248698 - | putative ATP-dependent DNA helicase TERM 207 250940 - 250908 - R 83 -14.3 -3.53444 | opp_overlap 250916 250934 250935, overlap 250916 GGAGCCGGCTGGAAA CAAAAAAAGGTGCTC GAT GAGCACCTTTTGTCG TAGGTTCGCGGCGCG TERM 208 250916 - 250932 + r 100 -12.3 -4.48741 | opp_overlap 250908 250916 CTGGAAACAAAAAAA GGTGCTC GAT GAGCACC TTTTGTCGTAGGTTC TERM 209 250932 - 250916 - R 100 -12.3 -5.95539 | opp_overlap 250916, overlap 250908 CTGGAAACAAAAAAA GGTGCTC GAT GAGCACC TTTTGTCGTAGGTTC RALTA_A0248 251493 - 250960 - | conserved hypothetical protein; putative TRANSMEMBRANE PROTEIN TERM 210 251649 - 251670 + r 71 -12.9 -3.04144 | GCGCGCGGCCACGGC GGCGCGGGC CTGC GCCAGCGCC TGTTCCAGGTAGGCG RALTA_A0249 252059 - 251628 - | hypothetical protein TERM 211 252228 - 252186 - H 75 -14.6 -2.70932 | opp_overlap 252200, overlap 252211 GCGGCGCGGCAAGCA CTGGCGCGCGGCTTCCGGGA TAA TACCGGTTTCCGCGCGCCGG CGACCCATGCCCGCG RALTA_A0250 252436 - 253038 + | putative lipoprotein TERM 212 253676 - 253696 + G 75 -5.3 -4.57073 | overlap 253663 253677 TTCCGCAATGCCCGT GCGGTGCTG TGG CAGAACCGG TTTTTCGGCAGCGTG RALTA_A0251 253121 - 253762 + | putative neutral amino-acid efflux system, rhtB family (lysine, threonine, homoserine) RALTA_A0252 253852 - 254031 + | hypothetical protein RALTA_A0253 254735 - 254013 - | putative transcriptional regulator, GntR family, small molecule-binding UbiC domain RALTA_A0254 254803 - 255159 + | hypothetical protein TERM 213 256323 - 256302 - g 70 -15.1 -2.78384 | TGCGCGGCCAGTACA CCGCCGGCG CCAT CGCCGGCGA GCTGGTACGCGGCTA zwf1 255413 - 256900 + | glucose-6-phosphate dehydrogenase RALTA_A0256 258455 - 256914 - | putative ATPase, Mg chelatase-related protein TERM 214 258508 - 258489 - R 100 -15 -4.86621 | ACTGTTAACGAAAAA GGCCGCCA GGAC TGGCGGCC TTCAGGCAGGCGGGA RALTA_A0257 258822 - 258544 - | conserved hypothetical protein, DUF526 TERM 215 258724 - 258736 + g 91 -3.3 -5.50499 | AAAGCCCTGGGTCAT CATGC TGC GCACG TTTTTTTCGATGTCC RALTA_A0258 259211 - 259993 + | conserved hypothetical protein; putative exported protein glnB/K 260046 - 260384 + | regulatory protein (P-II) for nitrogen assimilation by glutamine synthetase (ATase); signal transduction protein, associated to amtB, ammonium transporter TERM 216 260545 - 260518 - g 82 -14.8 -3.40403 | overlap 260519 CGCCGCGCAGGACAA GCCGGCAGCCGA GGCC TCGGCCGCCGCC ACTTCCGCGCCGGCC TERM 217 260576 - 260519 - g 79 -18.3 -2.64099 | gap 1, overlap 260518 GCCGCGCAGGACAAG CCGGCAGCCGAGGCCTCGGCCGCCGC CACTTCC GCGCCGGCCGCCGCGCCGGCTG-CGG CAGCTACCGCTGCCG amtB 260456 - 261964 + | ammonium transport protein (Amt family) TERM 218 262018 - 262036 + F 100 -13.1 -5.32944 | GCTCTCAGGAGTTTT GCCCGGC CGCGT GCCGGGC TTTTTTCCTTGTCGC TERM 219 262332 - 262348 + F 100 -15.1 -6.06723 | opp_overlap 262332 TCAGGCCATTTAAAA GCGCGGC ATC GCCGCGC TTTTTTTTTGCCCGG TERM 220 262348 - 262332 - f 100 -15.1 -4.1899 | opp_overlap 262332 TCAGGCCATTTAAAA GCGCGGC ATC GCCGCGC TTTTTTTTTGCCCGG RALTA_A0261 262523 - 263818 + | hypothetical protein gshB 263827 - 264792 + | glutathione synthetase TERM 221 265254 - 265212 - gf 70 -12.4 -3.14564 | CCAGCTTGCCACCAA GGCGCTGGCCGGCGGCTCGC AGG GCGTGCTGCAGGTCGGCACC ACCACCGTCCAGAAT RALTA_A0263 264871 - 265326 + | PTS system fructose IIA component (phosphoenolpyruvate-dependent sugar phosphotransferase system) ptsH 265295 - 265564 + | PTS family Hpr protein, phosphohistidinoprotein-hexose phosphotransferase TERM 222 266414 - 266402 - g 86 -6.9 -4.82901 | overlap 266403 266404 CGTGCTGGAGAAAAA GCGCC TGC AGCGC CTGCGGCATACGCCG TERM 223 266484 - 266531 + G 77 -15.4 -3.18199 | gap 1, overlap 266486 266491 266491 AATATCGAGATGGCC GAGGACGCCGGCG-CCGCGCTGG CCG CCGGCGCGGTCGGCGTCGGCCTG TTCCGTTCCGAGTTC TERM 224 266486 - 266529 + G 85 -18 -3.15056 | gap 1, overlap 266484 266491 266491 TATCGAGATGGCCGA GGACGCCGGCG-CCGCGCTGG CCG CCGGCGCGGTCGGCGTCGGCC TGTTCCGTTCCGAGT ptsI 265614 - 267386 + | PTS family enzyme I and Hpr components, PEP-protein phosphotransferase TERM 225 267381 - 267397 + F 82 -10.9 -4.07568 | CGCCAGATGGCACGA CCCTGAT GTG ATCAGGG TTTTCCGAGGCAAAA TERM 226 267410 - 267465 + F 100 -32.8 -4.66609 | gap 1, opp_overlap 267413, overlap 267413 GGGTTTTCCGAGGCA AAAGGCGGCTGGCGCGGCAC-ATTCCG ACA CGGAAAAGTGCCGCGCCAGCCGCCTTC TTTTTGCGTGCAGTG TERM 227 267413 - 267462 + F 100 -34.5 -4.44608 | gap 1, opp_overlap 267413, overlap 267410 TTTTCCGAGGCAAAA GGCGGCTGGCGCGGCAC-ATTCCG ACA CGGAAAAGTGCCGCGCCAGCCGCC TTCTTTTTGCGTGCA TERM 228 267462 - 267413 - f 100 -34.5 -4.18018 | gap 1, opp_overlap 267413 267410 TTTTCCGAGGCAAAA GGCGGCTGGCGCGGCAC-ATTCCG ACA CGGAAAAGTGCCGCGCCAGCCGCC TTCTTTTTGCGTGCA bfd 267567 - 267905 + | BACTERIOFERRITIN-ASSOCIATED FERREDOXIN PROTEIN TERM 229 267897 - 267881 - f 72 -13.7 -2.71731 | overlap 267850 GGCAGTCGCGAACGA CCAGCGC AAG GCGCTGG TGGCCTGAACGCGCC TERM 230 267898 - 267951 + F 100 -9 -5.13354 | opp_overlap 267919, overlap 267907 AGCGCAAGGCGCTGG TG-GCCTGAACGCGCCCATGAACTGA AGCG TCAGTTCACGG-CGCGTTTTTGCGCA TTTCTTTTTTCTGAC TERM 231 267907 - 267941 + F 100 -13.7 -4.6526 | gap 1, opp_overlap 267919, overlap 267898 CGCTGGTGGCCTGAA CGCGCCCATGAACTGA AGCG TCAGTTCACGG-CGCG TTTTTGCGCATTTCT TERM 232 267963 - 267994 + F 83 -7.2 -4.56597 | gap 1, overlap 267971 CGCATTTCTTTTTTC TGACTGCACGGCGCC ATT GGCGCCGTTTCG-CA TTTTTGCGCGGGCCC TERM 233 267971 - 267987 + F 90 -15.1 -3.8046 | overlap 267963 TTTTTTCTGACTGCA CGGCGCC ATT GGCGCCG TTTCGCATTTTTGCG bfr1 268028 - 268507 + | bacterioferritin, an iron storage homoprotein TERM 234 268560 - 268508 - f 88 -14.9 -3.71848 | gap 4, opp_overlap 268522 CCGGGCGAGCAATAA GCCGC-CGTCTTCGGCGAGGCCGCTCC GAC GG-GCGGCC-CGCCCCAG-CGCGCGGC GCCGATCGGCGCCGC TERM 235 268522 - 268579 + F 95 -19.8 -3.14881 | gap 2, opp_overlap 268508 AGCCGCCGTCTTCGG CGAGGCCGCTCCGA-CGG-GCGGCCCGC CCCA GCGCGCGGCGCCGATCGGCGCCGCCTCG TTGCTCGCCAGCTTG TERM 236 268884 - 268901 + G 76 -2 -4.72986 | gap 1, overlap 268880 GAGGGCCAGCGCGGC GT-GGTG TCCAC CACCGAC TTTTTCATGCCCATC TERM 237 269360 - 269330 - g 83 -14.7 -3.61398 | gap 1 GTGCGTGCTCAACAA GCCCGGCA-GCGCC TTCG GGCGCTTGCCCGGC GTGCGGGCGATGACC selD 268692 - 269735 + | selenophosphate synthase selU 269735 - 270841 + | Selenophosphate-dependent tRNA 2-selenouridine synthase RALTA_A0270 271871 - 270849 - | conserved hypothetical protein; similar to p1RATA1884, 1881 and 1879 RALTA_A0271 272920 - 271904 - | conserved hypothetical protein; similar to p1RATA1884, 1881 and 1879 TERM 238 272514 - 272500 - G 81 -3.4 -4.93365 | overlap 272502 CGCCATAATGAAAAA CGCGCC ACG GACTCG CTGCGACAAGGTATG RALTA_A0272 274578 - 272917 - | conserved hypothetical protein; putative hydrolase TERM 239 273592 - 273577 - G 72 -3.2 -4.56597 | TTCGTTCTGCAAAAA CAACCA AGCT TGGCCG TCGCGATGATCGAAC TERM 240 273750 - 273726 - G 78 -13.5 -3.60627 | GCATGTGATGGTAAA TCGCCGGCGCC CCT GTCGCCGGCAA TACGCCATGGACCAC TERM 241 274366 - 274381 + g 90 -4.7 -5.29445 | overlap 274364 ATTCGGTGGCCGCCA GACAG CATTGC CTGTC TTTTTGTTCTTCAGG RALTA_A0273 277639 - 274586 - | conserved hypothetical protein; VGR-RELATED PROTEIN moeB 278726 - 277941 - | molybdopterin synthase sulfurylase RALTA_A0275 280420 - 278813 - | Carboxy-terminal-processing protease, Peptidase S41 family; putative autocatalytic processed precursor TERM 242 280484 - 280501 + r 86 -14.1 -3.86524 | TTATGCCGGCTGCGG CCGCCCG GCGC CGGGCGG TTTGTCCGACAGTAT TERM 243 280622 - 280650 + r 89 -17.4 -3.21099 | GCCTTGCCCTGGCTG GCCACCGCCGCC AGCGA GGCGGCGATGGC TTCCTGGTCACCCAG gpmA 281346 - 280600 - | phosphoglyceromutase 1 RALTA_A0277 281548 - 281961 + | putative rhodanese-related sulfurtransferase; putative membrane protein TERM 244 281987 - 282018 + F 76 -13.6 -3.17075 | gap 1 CTGTCGTAACCGTCA CGGCGCGC-CCCGGC CAG GCCGGGCGCGCCCCA TTGCATTCAAGGAGA grxC 282040 - 282297 + | glutaredoxin secB 282494 - 283012 + | molecular chaperone in protein export, enhances activity of SecA (General Secretory Pathway) TERM 245 283041 - 283056 + F 91 -11.8 -4.35926 | opp_overlap 283041 CGCCATCCACTGAAA CGGGGC TGCG GCCCCG TTTTGCCTTTGGGCT TERM 246 283056 - 283041 - f 75 -11.8 -3.6682 | opp_overlap 283041 CGCCATCCACTGAAA CGGGGC TGCG GCCCCG TTTTGCCTTTGGGCT TERM 247 283080 - 283108 + F 78 -15.4 -2.75528 | gap 1, overlap 283077 TTGGGCTACCATCGT TGGCGCAAGCCGC CGAA GCG-CTTGCGCCA TCATCTGTTCGAGCT gpsA 283127 - 284143 + | glycerol-3-phosphate dehydrogenase (NAD+) TERM 248 284368 - 284346 - g 73 -7.7 -4.18018 | CCTCCTGACCGAAAA GCTGGCC GCCGCGCTG GGCCAGC CGGTGGTGGTGGAAA TERM 249 284402 - 284385 - g 72 -9.1 -4.07568 | gap 1, overlap 284386 GGTGGTGGTGGAAAA CCGCCCGG GCG CCG-GCGG CAACATCGGCACCGG RALTA_A0281 284182 - 285159 + | conserved hypothetical protein, UPF0065 RALTA_A0282 285654 - 285184 - | putative tRNA/rRNA methyltransferase TERM 250 285670 - 285684 + rH 73 -12.8 -3.14344 | GATGCGGGCGATGGC GGGCGC GCG GCGCCC TTCGTCAGAACGGTG RALTA_A0283 286597 - 285740 - | putative amidophosphoribosyltransferase, comF/gntX family TERM 251 286433 - 286472 + gH 79 -15.8 -2.91274 | gap 3 GCGCGCACGGGACAG CGCGCG-GCCG-GCGGCGC CGGCA GC-CCGCGCGGCGCGCGCG TATACTTGCCGTCCG TERM 252 286484 - 286516 + gH 70 -12 -3.14132 | gap 2 CGCGTATACTTGCCG TCCGGCCG-CG-GCCC ATC GGGCGTGGCGGCCGGG TTCGTCCGGCGCCAG TERM 253 286522 - 286555 + gH 83 -14.5 -3.41327 | gap 1, overlap 286552 GGCGGCCGGGTTCGT CCGGCGCCAGGGGCAG TGC CTGCCCGCG-CGCCGG TTCCTGGTTTTCTTG TERM 254 286552 - 286562 + gH 79 -4.6 -4.731 | overlap 286522 GTGCCTGCCCGCGCG CCGG TTC CTGG TTTTCTTGCTGCCTT TERM 255 286902 - 286928 + GrH 75 -13.6 -3.04792 | GCCGGCCCGGCTGGA TCGGCCGCATGC TGG GCAAGCGGCCGC TGTTCGACCTGGTCC RALTA_A0284 286586 - 287539 + | putative BIOTIN SYNTHESIS METHYLTRANSFERASE, bioC RALTA_A0285 287909 - 287547 - | hypothetical protein RALTA_A0286 287809 - 288318 + | conserved hypothetical protein, putative TRANSMEMBRANE PROTEIN TERM 256 289644 - 289603 - g 70 -12.4 -3.31144 | gap 3, overlap 289582 CGCTCAGGCTGACAA GCAGGCCAGCCT-CG-CG-GG CAA CCGCGTCGCAGGCTGACCCGC TGAAGACAGAACAGG coxB 288377 - 289639 + | CYTOCHROME C OXIDASE POLYPEPTIDE II PRECURSOR (CYTOCHROME AA3 SUBUNIT 2) TRANSMEMBRANE PROTEIN TERM 257 291222 - 291258 + G 71 -10.8 -3.66178 | gap 1 TGGCGCCGAGGGCCT GGAGTGG-ACCGTGCCG TCGC CGGCGCCGTTCCACACC TTTGAAGTTCCCCCG coxA 289678 - 291285 + | CYTOCHROME C OXIDASE POLYPEPTIDE I (CYTOCHROME AA3 SUBUNIT 1) TRANSMEMBRANE PROTEIN TERM 258 291343 - 291305 - f 81 -16.8 -2.71364 | gap 1, opp_overlap 291315, overlap 291315 GTACCCGCGTAACCA GGCCGTGAAAGGGGCGG CAGCGT CCGCCCCTTTCGCG-CC GGCAGGTATCAAGAC TERM 259 291334 - 291315 - g 74 -12.1 -3.54919 | opp_overlap 291315, overlap 291305 AACCAGGCCGTGAAA GGGGCGG CAGCGT CCGCCCC TTTCGCGCCGGCAGG TERM 260 291315 - 291334 + G 73 -12.1 -3.53012 | opp_overlap 291315 291305 AACCAGGCCGTGAAA GGGGCGG CAGCGT CCGCCCC TTTCGCGCCGGCAGG RALTA_A0289 291309 - 291494 + | hypothetical protein ctaG 291512 - 292147 + | Cytochrome c oxidase assembly protein CtaG/Cox11; transmembrane protein RALTA_A0291 292190 - 292414 + | conserved hypothetical protein; putative TRANSMEMBRANE PROTEIN TERM 261 292464 - 292441 - f 77 -3.8 -4.84311 | overlap 292457 292461 GGGTAGACAACAAAA GCAGTCGC AGAACAAA GCAACCGC GGCGGCGGGGCCAAC coxC 292559 - 293419 + | CYTOCHROME C OXIDASE SUBUNIT III TRANSMEMBRANE PROTEIN TERM 262 293484 - 293524 + T 95 -15.6 -4.08767 | gap 2, opp_overlap 293484 293490, overlap 293490 GGCGCCAACGCAAAA GAGAAACGCCGCAGG--GGC CTG GCCAGCCTGCGGCGTTTGTC TTTTGCGGGCCTGCG TERM 263 293524 - 293484 - T 100 -15.6 -4.27316 | gap 2, opp_overlap 293484 293490, overlap 293490 GGCGCCAACGCAAAA GAGAAACGCCGCAGG--GGC CTG GCCAGCCTGCGGCGTTTGTC TTTTGCGGGCCTGCG TERM 264 293490 - 293518 + T 100 -13.2 -4.45168 | gap 2, opp_overlap 293484 293490, overlap 293484 AACGCAAAAGAGAAA CGCCGCAGG--GGC CTG GCCAGCCTGCGGCG TTTGTCTTTTGCGGG TERM 265 293518 - 293490 - T 100 -13.2 -4.47679 | gap 2, opp_overlap 293490 293484, overlap 293484 AACGCAAAAGAGAAA CGCCGCAGG--GGC CTG GCCAGCCTGCGGCG TTTGTCTTTTGCGGG RALTA_A0293 293773 - 293564 - | conserved hypothetical protein; putative TRANSMEMBRANE PROTEIN TERM 266 293999 - 293975 - g 75 -9.1 -4.11183 | opp_overlap 293996 GCGCACGAGAAAGAA GCGCGCGCCGC ACG GCTGCAGGCGC TGGCGGCGCAGCCGC RALTA_A0294 293864 - 294619 + | putative TRANSMEMBRANE CYTOCHROME OXIDASE COMPLEX BIOGENESIS FACTOR RALTA_A0295 294652 - 295341 + | conserved hypothetical protein; putative TRANSMEMBRANE PROTEIN ctaA 295351 - 296454 + | CYTOCHROME C oxidase assembly protein, AA3 subunit-CONTROLLING TRANSMEMBRANE PROTEIN ctaB 296451 - 297395 + | PROTOHEME IX FARNESYLTRANSFERASE (HEME O SYNTHASE) TRANSMEMBRANE PROTEIN RALTA_A0298 297507 - 298127 + | putative cytochrome c oxidase assembly factor, scoC TERM 267 298209 - 298190 - T 100 -15 -5.4505 | opp_overlap 298190 CCGGGCAACAAAAAA GGCCGGTC CATG GACCGGCC TTTTGCATGGATGCG TERM 268 298190 - 298209 + T 100 -15 -4.19817 | opp_overlap 298190 CCGGGCAACAAAAAA GGCCGGTC CATG GACCGGCC TTTTGCATGGATGCG rpoH 299161 - 298232 - | RNA polymerase sigma H (sigma 32) factor; transcription of heat shock and stress proteins TERM 269 299368 - 299341 - H 74 -9.8 -3.72363 | opp_overlap 299355, overlap 299343 299356 CAGGTAAATCCTAAA GAGACGGCAACG ATAC CGCTGCCATCGC GCACTGGTAGTTAGA TERM 270 299366 - 299343 - H 71 -11 -3.43919 | opp_overlap 299355, overlap 299341 299356 GGTAAATCCTAAAGA GACGGCAACG ATAC CGCTGCCATC GCGCACTGGTAGTTA TERM 271 299898 - 299910 + G 75 -4.7 -4.58395 | overlap 299893 GCAGGAGCATGAGGG CGCCG AGC CGTCG TTTTTCCACCATCCG RALTA_A0300 299506 - 300381 + | conserved hypothetical protein, PIRIN-LIKE PROTEIN RALTA_A0301 301452 - 300400 - | putative phosphoribosyl transferase nasD 302282 - 301479 - | nitrate ABC transporter, ATP_binding component TERM 272 301890 - 301947 + g 82 -14.8 -3.4252 | gap 1 CGGATACTTGCCCTC GGCGTGGCTCAGGCCGACCA-GCGCCA GCGTG TCGTGCGTGCGCGCCCTGAGCCGCGCC TTGTCCTCGCTGCCC nasE 303192 - 302302 - | NITRATE ABC TRANSPORTER, TRANSMEMBRANE component TERM 273 303090 - 303135 + g 76 -14 -3.43071 | gap 1, overlap 303087 303086 CCTCGCGGCGTGCCG CGCGCAGCGCCTGCGCGGAGA TTTCC TGTTCGCGCCGGCG-TGTGCG TTCCTTGGTGTCGGG nasF 304558 - 303224 - | NITRATE ABC TRANSPORTER, periplasmic component TERM 274 304005 - 304016 + g 71 -2.2 -4.55798 | AAGGTCTGGGCGAAG GTGT AGTC ACGC TTTTCCTTTGCCATC TERM 275 304578 - 304634 + r 82 -14.5 -3.36327 | gap 3, opp_overlap 304580, overlap 304579 TGGCTCCAAGAAAAA AAGCGTCCCCTC-GCGCAGCCGG-CTTC GCCA GAAGACCGG-TGCGCTGCGGGGACGCCG TTGTCCGTGGCGTGA TERM 276 304579 - 304633 + r 86 -18 -2.61582 | gap 3, opp_overlap 304580, overlap 304578 GGCTCCAAGAAAAAA AGCGTCCCCTC-GCGCAGCCGG-CTTC GCCA GAAGACCGG-TGCGCTGCGGGGACGCC GTTGTCCGTGGCGTG TERM 277 304632 - 304580 - R 100 -21.5 -5.7946 | gap 3, opp_overlap 304579 304578 GCTCCAAGAAAAAAA GCGTCCCCTC-GCGCAGCCGG-CTTC GCCA GAAGACCGG-TGCGCTGCGGGGACGC CGTTGTCCGTGGCGT TERM 278 304643 - 304675 + r 74 -14.9 -2.6063 | gap 1, overlap 304639 GACGCCGTTGTCCGT GGCGTGACGCGGCC CGCGTT GGCCGTGTC-CGCC TGAGTTGTCGATCGG nasR 305579 - 304935 - | response regulator antiterminator transcriptional regulator, RNA-binding ANTAR domain TERM 279 306191 - 306170 - g 87 -9.3 -4.72631 | ACGAATCGAAGAAAA CCGGCCGCC CTTG GGAGACCGG CAAGGCCTTCGACCA RALTA_A0306 305788 - 306489 + | putative isomerase/hydrolase; putative Fumarylacetoacetate (FAA) hydrolase RALTA_A0307 306494 - 307141 + | putative MALEYLACETOACETATE ISOMERASE TERM 280 307191 - 307160 - T 86 -13 -4.09685 | gap 1, opp_overlap 307164 307166, overlap 307166 TGCGACCCGGCAAAA CGCAAACGCCCCGGC ACT GCCGGGGCGTCTT-G TCTTGCAGGACGTCG TERM 281 307164 - 307188 + T 100 -17.1 -3.65812 | opp_overlap 307160 307166, overlap 307166 ACCCGGCAAAACGCA AACGCCCCGGC ACT GCCGGGGCGTC TTGTCTTGCAGGACG TERM 282 307166 - 307186 + T 100 -19.7 -3.41024 | opp_overlap 307166 307160, overlap 307164 CCGGCAAAACGCAAA CGCCCCGGC ACT GCCGGGGCG TCTTGTCTTGCAGGA TERM 283 307186 - 307166 - T 100 -19.7 -3.92659 | opp_overlap 307164 307166, overlap 307160 CCGGCAAAACGCAAA CGCCCCGGC ACT GCCGGGGCG TCTTGTCTTGCAGGA ftsY 308368 - 307211 - | Signal recognition particle GTPase RALTA_A0309 308531 - 310144 + | putative ZINC PROTEASE, peptidase M16 family TERM 284 310779 - 310796 + G 70 -12.7 -3.28712 | opp_overlap 310789 GTGGCGTCGATCACG CGCGACG ACAT CGTCGCG TTCTGGCGCGACAAC TERM 285 311229 - 311249 + G 91 -14.7 -3.85698 | opp_overlap 311202 GAGGCGCTGGCGCTG GTGCGCCAG GTG CTGGCGCGC TTTGTCGCCGAAGGC RALTA_A0310 310155 - 311537 + | putative ZINC PROTEASE, peptidase M16 family RALTA_A0311 311599 - 312246 + | conserved hypothetical protein, putative methyltransferase TERM 286 312234 - 312274 + F 81 -16.1 -2.70932 | gap 1 CCGCACGCCCGGCAA CGGCGCCGC-CTGAGCCG CCAGGC CGGCCCGGTGCGGTGCCG TGGTTCAGGAAACAG TERM 287 312305 - 312287 - f 81 -13.2 -3.72576 | opp_overlap 312275 312274 312289 CCGTGGTTCAGGAAA CAGGAAGG GCG CCTTCCTG ATTGCGAAACCGATT coaD 312487 - 312972 + | CMP-deoxy-D-manno-octulosonate-lipid A transferase (phosphopantetheine adenylyltransferase) RALTA_A0313 313040 - 313300 + | putative 4Fe-4S ferredoxin-type protein TERM 288 313396 - 313369 - T 100 -18.4 -5.40072 | opp_overlap 313364 313363 CGTCGCGCAAAAAAA GCCCCCGGCACC GCAA GGTGACGGGGGC TTAACCTTTCCCCAA RALTA_A0314 315303 - 313444 - | conserved hypothetical protein, DUF839 TERM 289 315383 - 315395 + r 71 -9.1 -3.72893 | CCCGCAATGTAGGTG GTGCC CAT GGCAC TTTGATGACACCATG TERM 290 315469 - 315439 - R 76 -13.2 -3.53091 | opp_overlap 315445, overlap 315440 ACCGGTGCGTGCAAA CGACGACGGGCCGC GAT GCGGCCCGTTTTCA TGCTGTTGTCGCAGG TERM 291 315468 - 315440 - R 75 -14.5 -2.71712 | opp_overlap 315445, overlap 315439 CCGGTGCGTGCAAAC GACGACGGGCCGC GAT GCGGCCCGTTTTC ATGCTGTTGTCGCAG TERM 292 315445 - 315463 + r 100 -17.4 -4.36063 | opp_overlap 315440 315439 GCGTGCAAACGACGA CGGGCCGC GAT GCGGCCCG TTTTCATGCTGTTGT pth 316107 - 315511 - | peptidyl-tRNA hydrolase TERM 293 316185 - 316168 - R 100 -12.7 -4.72333 | overlap 316160 AAGGATACCGAAAAA CCGGCAG TCCG CTGCCGG GCGAAAAAAAACCGC TERM 294 316214 - 316197 - R 100 -14.1 -5.75342 | opp_overlap 316197 CCGGGCGAAAAAAAA CCGCCGC AAGG GCGGCGG TTTCTTCGTGGCGCG TERM 295 316197 - 316214 + r 93 -14.1 -4.24342 | opp_overlap 316197 CCGGGCGAAAAAAAA CCGCCGC AAGG GCGGCGG TTTCTTCGTGGCGCG rplY 316899 - 316282 - | 5S rRNA binding 50S RIBOSOMAL SUBUNIT PROTEIN L25 TERM 296 316942 - 316921 - R 86 -12.3 -4.21465 | opp_overlap 316921, overlap 316940 TCCAAAAGTAAAGAA GGCTGTCCG CGAC CAGACAGCC TCGTTGCGGCGCGAA TERM 297 317016 - 316980 - R 89 -17.3 -3.14211 | opp_overlap 316977, overlap 316967 316984 317001 ATCGGCGCCGATCAA GTCACGTTTGCCGCCGC AAA ACGGCGGCAAACGCAGC AAAGCTTTAAATTCT TERM 298 317012 - 316984 - R 91 -21.1 -2.56596 | opp_overlap 316977, overlap 316967 316980 317001 GCGCCGATCAAGTCA CGTTTGCCGCCGC AAA ACGGCGGCAAACG CAGCAAAGCTTTAAA prs 317986 - 317033 - | phosphoribosylpyrophosphate synthetase ispE 319098 - 318220 - | 4-diphosphocytidyl-2-C-methylerythritol kinase TERM 299 318431 - 318462 + g 72 -4.4 -4.55295 | gap 1, overlap 318432 AACTTCGCTGTTGCT ATCGGTTCCAGGTCG TTG CGACC-GAAATCGAA TTTGTTTGTGCGAGC lolB 319741 - 319130 - | Outer-membrane lipoprotein lolB precursor TERM 300 319827 - 319790 - R 93 -17 -3.53012 | gap 2, opp_overlap 319793 GCCGGCTGCGGGAAA CGGGCGCCGCGGGCCCGG CTTG CCGG-C-CGCGGCGCGCG GGCTTACCTGGACGG TERM 301 319793 - 319830 + r 75 -13.4 -3.05596 | opp_overlap 319790 GGCTGCGGGAAACGG GCGCCGCGGGCC-CGGCT TGCC GGCCGCGGCGCGCGG-GC TTACCTGGACGGCTG RALTA_A0320 321774 - 319831 - | conserved hypothetical protein; putative exported protein TERM 302 321831 - 321859 + H 81 -16.1 -2.70932 | opp_overlap 321831 321855 321856 ATTGCGCATTGATAA GGGCATTGTAGCG TGC CGCTACAATGCGC TGCTTGGCGCCGCAG TERM 303 321859 - 321831 - H 88 -16.1 -3.35798 | opp_overlap 321831, overlap 321855 321856 ATTGCGCATTGATAA GGGCATTGTAGCG TGC CGCTACAATGCGC TGCTTGGCGCCGCAG mutM 321930 - 322802 + | formamidopyrimidine/5-formyluracil/ 5-hydroxymethyluracil DNA glycosylase/ DNA lyase TERM 304 322970 - 322954 - f 72 -4.4 -4.56887 | gap 1, overlap 322955 322956 TAAAAAGTTACAAAA TGGC-CG GCCG CGAGCCA TGCAGGCGGGGCGTG TERM 305 324322 - 324338 + G 74 -13.7 -3.34398 | opp_overlap 324320 324319, overlap 324320 GAGCATCAGCAAGTT CCAGGCG CTG CGCCTGG TGTTTGGCCGGCACA RALTA_A0322 323066 - 325018 + | conserved hypothetical protein; putative nucleoside triphosphate hydrolase domain TERM 306 325070 - 325090 + F 100 -15.4 -5.27335 | opp_overlap 325067 GCCGGTATATCATGT GGCGCCGC GCCTA GCGGCGCC TTTTTCTTTGGCGCG TERM 307 326261 - 326310 + G 71 -10.5 -3.80733 | gap 1, opp_overlap 326295 ATCTCGACGCGCTGG GTACGCCCGCGCC-GGTGCGCCGG CTG CTGGAAGACCAGGCGCGGGTGGGC TTGTTCTGAACTGAA mutY 325144 - 326319 + | adenine DNA glycosylase RALTA_A0324 327021 - 326362 - | putative peptidase, S16 family RALTA_A0325 327989 - 327114 - | conserved hypothetical protein; putative P-loop ATPase TERM 308 328079 - 328058 - R 100 -14.5 -4.68645 | CACCCAAAATGAAAA TGGCGAACC TCGC GGTTCGCCA TGCTGCGGTGCCAGG psiF 328493 - 328101 - | phosphate starvation inducible psiF; putative exported protein TERM 309 328689 - 328647 - R 76 -11.3 -3.81027 | gap 2, overlap 328648 328673 TGTAAGCAATTGAAA GCCGCGGCGCAGGACCGGCTA CAG CAGCCGCCCCTG-ACCGCG-C GAGACGGCGTCGGCC ptsK 329636 - 328665 - | HPr serine kinase/phosphorylase ptsN 330173 - 329718 - | Phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS), EIIA 2 component TERM 310 330472 - 330453 - R 100 -12.1 -5.02074 | opp_overlap 330453 CCAGGGCGCAAAAAA GCCGCGC TTCACG GCGCGGC TTGCCTGTGGAATCT TERM 311 330453 - 330472 + r 73 -12.8 -3.13177 | opp_overlap 330453 CCAGGGCGCAAAAAA GCCGCGCT TCAC GGCGCGGC TTGCCTGTGGAATCT yhbH 330875 - 330525 - | sigma(54) modulation protein rpoN 332402 - 330924 - | sigma N (sigma 54) factor of RNA polymerase TERM 312 331611 - 331644 + g 78 -6 -4.57073 | gap 1 GATCAGGTCATGGGC GGCCTT-CAGCGCGA CCTCA TCGACCTGCAAGGCC TTTTTCAGCCGCGTG TERM 313 332255 - 332271 + g 75 -9.4 -4.18018 | CGATCCAGTCGTTTT CCCGCT CGAGC AGCGGG TTTTCCGTCAGCGCC TERM 314 332349 - 332321 - G 83 -15.3 -3.55444 | opp_overlap 332330 GTTCCAGCGTGGAAA GCTGCAGCAGCCG GAT CGACTGTTGCAGC TGGGGGGTCAGTGCC RALTA_A0332 333328 - 332528 - | putative ABC transport protein, atp_binding component TERM 315 332803 - 332783 - G 75 -10.4 -3.99324 | gap 1, opp_overlap 332782 332797 332797 GTCCAGCAGGATAAA GCGC-GGCG ATGA CGCCAGCGC GCGTGCGATTTCCAC RALTA_A0333 333981 - 333337 - | conserved hypothetical protein, OstA domain; putative exported PROTEIN RALTA_A0334 334730 - 334101 - | conserved hypothetical protein, DUF1239; putative TRANSMEMBRANE PROTEIN kdsD 335811 - 334795 - | Arabinose-5-phosphate isomerase TERM 316 337574 - 337625 + G 70 -12.8 -3.34398 | gap 1, overlap 337573 GCCGATGCGGCGCGT GGTGCGCGGCGTGCAGCAGGCGCGC GAC GCGCGC-TACAGCCTGCTGCGCGGC TATTTCCACGGGCGC RALTA_A0336 335922 - 337901 + | GLUTATHIONE-REGULATED POTASSIUM-EFFLUX SYSTEM K+/H+ ANTIPORTER TRANSMEMBRANE PROTEIN TERM 317 337937 - 337911 - T 76 -11.4 -3.68351 | opp_overlap 337923 GGCTGAGCACTCAAA CGCGAGGGGGCG CGC CGCCGCCCCGGG GGGCACGGCGTTCAG RALTA_A0337 338323 - 337949 - | hypothetical protein RALTA_A0338 339001 - 338423 - | conserved hypothetical protein; putative peptidase, type 1 glutamine amidotransferase (GATase1)-like domain TERM 318 338499 - 338459 - G 82 -11.6 -4.18934 | overlap 338431 CAGCACCGCAAGAAA CTGCGCCAGCCAGGCCGG GTGCG CGGGCCAGGCCGGGGCGG TGACGAGGTTGCCAT apt 339196 - 339768 + | adenine phosphoribosyltransferase RALTA_A0340 339809 - 340420 + | putative lysis exporter RALTA_A0341 340603 - 342282 + | putative transport protein (PNaS family)/regulator/enzyme RALTA_A0342 342777 - 342292 - | conserved hypothetical protein, DUF355 RALTA_A0343 342893 - 343486 + | putative Phosphoglycerate mutase/bisphosphoglycerate mutase uvrA1 346378 - 343514 - | ATPase and DNA damage recognition protein of nucleotide excision repair excinuclease UvrABC TERM 319 346933 - 346954 + G 75 -10.1 -4.07885 | gap 1 CCTGCTGCTGTTTAT CGCGGGCGGC CTG GTCGC-CGCG TTTTCCGACACGCTG RALTA_A0345 346607 - 347857 + | putative transporter, MFS family TERM 320 347913 - 347955 + F 81 -13.5 -3.64703 | opp_overlap 347904 347907 347906, overlap 347916 CGGAAAGAGGCCTAG C-ATCATCGCGCCACCCGGCA TTC TGGCGGG-GGCGCGATGTTCG TTTACGTCGCGGCAC TERM 321 347916 - 347951 + F 100 -19.8 -3.54408 | gap 1, opp_overlap 347907 347906, overlap 347913 AAAGAGGCCTAGCAT CATCGCGCCACCCGGCA TTC TGGCGGG-GGCGCGATG TTCGTTTACGTCGCG ssb1 348060 - 348596 + | ssDNA-binding protein, controls activity of RecBCD nuclease TERM 322 348628 - 348655 + F 100 -12 -4.56597 | gap 1, opp_overlap 348611 348633, overlap 348629 348630 348633 TCGCCAGCATTGCCA TC-GAACCCCCGC GCT GCGGGGGTTCTGC TTTTTGGAGCCGACG TERM 323 348629 - 348654 + F 84 -15.5 -3.33744 | gap 1, opp_overlap 348611 348633, overlap 348628 348630 348633 CGCCAGCATTGCCAT C-GAACCCCCGC GCT GCGGGGGTTCTG CTTTTTGGAGCCGAC TERM 324 348630 - 348652 + F 93 -19.2 -3.23708 | opp_overlap 348611 348633, overlap 348629 348628 348633 GCCAGCATTGCCATC GAACCCCCGC GCT GCGGGGGTTC TGCTTTTTGGAGCCG TERM 325 348649 - 348633 - f 81 -15.1 -3.06302 | opp_overlap 348630 348629 348628 348633 AGCATTGCCATCGAA CCCCCGC GCT GCGGGGG TTCTGCTTTTTGGAG TERM 326 348633 - 348649 + F 90 -15.1 -3.75505 | opp_overlap 348633, overlap 348630 348629 348628 AGCATTGCCATCGAA CCCCCGC GCT GCGGGGG TTCTGCTTTTTGGAG RALTA_A0347 348860 - 349906 + | putative OUTER MEMBRANE PORIN RALTA_A0348 349943 - 350914 + | conserved hypothetical protein, UPF0065 TERM 327 351830 - 351796 - g 71 -10.7 -3.61398 | gap 1, overlap 351801 GTGGCCGTGGAAGAA GACTATGCCGGCCCCG AGTT CGAGACCGGCAC-GCC AGCGTCCGCCCAGGC TERM 328 351826 - 351801 - g 72 -14.7 -2.85545 | overlap 351796 CGTGGAAGAAGACTA TGCCGGCCCCG AGTT CGAGACCGGCA CGCCAGCGTCCGCCC RALTA_A0349 350911 - 351861 + | conserved hypothetical protein, Basic membrane lipoprotein motif RALTA_A0350 353051 - 351879 - | putative diguanylate cyclase (GGDEF domain) RALTA_A0351 353448 - 353786 + | conserved hypothetical protein; putative transmembrane protein TERM 329 353815 - 353850 + T 91 -17 -3.29144 | gap 1, opp_overlap 353821, overlap 353816 353819 TCCGCGGCACGTATT G-CAAGACCGCCACACT CGA AGCGTGGCGGTCTTGTC TTGTGAACGGCATCG TERM 330 353816 - 353848 + T 95 -20.7 -3.21395 | opp_overlap 353821, overlap 353815 353819 CCGCGGCACGTATTG CAAGACCGCCACACT CGA AGCGTGGCGGTCTTG TCTTGTGAACGGCAT TERM 331 353819 - 353845 + T 93 -16.6 -3.7511 | opp_overlap 353821, overlap 353816 353815 CGGCACGTATTGCAA GACCGCCACACT CGA AGCGTGGCGGTC TTGTCTTGTGAACGG TERM 332 353843 - 353821 - T 81 -15.6 -3.06492 | opp_overlap 353819 353816 353815 GCACGTATTGCAAGA CCGCCACACT CGA AGCGTGGCGG TCTTGTCTTGTGAAC RALTA_A0352 354118 - 353870 - | hypothetical protein RALTA_A0353 354546 - 355043 + | putative K+ transport system component RALTA_A0354 355150 - 356622 + | hypothetical protein RALTA_A0355 356671 - 357030 + | putative lipoprotein TERM 333 357063 - 357033 - T 70 -11.8 -3.1552 | gap 1, opp_overlap 357032 357031, overlap 357031 GTGCACGCAGTAATA GCG-GCCGGGCCG CGCTTT CGGCCGGGCGCGC GCCGCTGCGCCTAGC RALTA_A0356 357925 - 357074 - | putative transcriptional regulator, RpiR and Sugar isomerase (SIS) domains TERM 334 358175 - 358200 + H 81 -7.5 -4.41047 | opp_overlap 358180 358181 CCACTGTCACTTCGC TACAACGCCGG CCAA CCGGCATCGTA TTTTCCTTACCCGCT TERM 335 358723 - 358706 - g 70 -8.3 -3.83502 | overlap 358707 CACGGTGACACCAAA CGCGGCG CTGC CGCCGGG CTACCGCATCGTGGC RALTA_A0357 358428 - 358844 + | putative TYPE 4 FIMBRIAL BIOGENESIS TRANSMEMBRANE PROTEIN, pilE family RALTA_A0358 358847 - 359341 + | putative TYPE 4 FIMBRIAL PILIN RELATED TRANSMEMBRANE PROTEIN, pilE family TERM 336 359378 - 359406 + G 72 -13.2 -3.23216 | gap 2, overlap 359380 CGTCGCCGCGGCGGC GCCTGCCCGTGCGC CGT GCGCA-GGGC-GGC TTCCTGCTGATCGAA TERM 337 359774 - 359730 - g 70 -12.7 -3.30124 | gap 1 CGGCAGCGCCGAGAA GCGCCCGGGCGCCAGCGCCG CCGATC CGGCGCAAGC-CGTGGGCGC CATGATCGGCGCGCG RALTA_A0359 359338 - 359970 + | putative TYPE 4 FIMBRIAL BIOGENESIS RELATED TRANSMEMBRANE PROTEIN, pilE family RALTA_A0360 359967 - 361031 + | putative TYPE 4 FIMBRIAL BIOGENESIS PROTEIN TRANSMEMBRANE RALTA_A0361 361028 - 361618 + | putative pilin biogenesis TRANSMEMBRANE PROTEIN (pilin operon) TERM 338 363331 - 363313 - g 75 -4.5 -4.62783 | gap 1, overlap 363317 363318 CACCGATCCGAAAAA GGAAGCCG AGCC CGGC-CCC GGCGGCAACGTCACG RALTA_A0362 361661 - 364930 + | TYPE 4 FIMBRIAL BIOGENESIS PILY1-RELATED PROTEIN; SIGNAL PEPTIDE RALTA_A0363 366445 - 364961 - | putative Outer membrane efflux protein TERM 339 365644 - 365702 + g 81 -18.8 -2.72144 | gap 1, overlap 365656 TCTGGCCCGTGTAGA CCGCGAGCTGGTGCCGG-GTGGCATCG AGCTGG CGCTGCAGCGCCGGCACCAGCGCCCGG GTTTGCGCCAGCTCG RALTA_A0364 367614 - 366457 - | putative ABC-2 transporter, membrane + ATP binding component TERM 340 366751 - 366700 - G 82 -3.7 -4.99861 | gap 3, opp_overlap 366702 366703, overlap 366701 366702 CAGGAAGTAGAAAAA CGTCA-GCTG-CATCGCCTGCAGCTG GTT CTGC-GCCAGCGACGACAGCGTGATG CCCACGGTCAGGTTG RALTA_A0365 368576 - 367611 - | putative ABC TRANSPORTER, ATP-BINDING component RALTA_A0366 369562 - 368573 - | putative biotinyl/lipoyl-carrier protein TERM 341 369063 - 369103 + g 72 -13.2 -3.15544 | gap 1 ATATCGCGCTGCAGT TCGCGCACGCGCGC-GGCG TCGC TGCCGGCCTGCGCGCGCGA TTCGTCGAGCTGCGC TERM 342 369525 - 369487 - G 70 -15.2 -2.71263 | AAGCGGCGGCAAGCA GCGCGGCGCCGAGCAG GGCAGTG CCGCGCAGCACCGCGC GCGGCCGCGGACAAG RALTA_A0367 370290 - 369559 - | putative transcriptional regulator, tetR family TERM 343 370207 - 370264 + g 85 -17 -3.14211 | gap 3, overlap 370208 370225 GGCCGCGTCGAGGAT GC-GCTC--GCGCTGTCCGGGCTGGCCCG CCG CGGGTCGGCCCGGGCTGCGCCTGGGTGGC TTCGTGGGGGCGGGT TERM 344 370208 - 370260 + g 86 -22.5 -2.56596 | overlap 370207 370225 GCCGCGTCGAGGATG CGCTCGCGCTGTCCGGGCTGGCCCG CCG CGGGTCGGCCCGGGCTGCGCCTGGG TGGCTTCGTGGGGGC TERM 345 370225 - 370278 + g 71 -11.5 -3.53811 | gap 1, overlap 370208 370207 CTCGCGCTGTCCGGG CTGGCCCGCCGCGGGTCGGCCCGGGC TGC GCCTGGGTGGCTTCGTGG-GGGCGGG TTTGCGGGGCATGGC TERM 346 370499 - 370460 - R 86 -16.4 -3.24021 | overlap 370453 370455 GCCCCAAATACTGAA GGCCGGTCCCCTCTCCCG CAAG CGGGAGAGGGGAGCAAAC CAGCGGGGATGGGAG queF 371378 - 370545 - | 7-cyano-7-deazaguanine reductase ilvA 372946 - 371408 - | threonine deaminase TERM 347 371491 - 371501 + g 71 -2.4 -4.57569 | opp_overlap 371481 371480 371477 371476, overlap 371481 GGAAGGCGCGGAAGG CGCG CTT CTCG TTTTTCGGCACCTGG otsB 373252 - 374058 + | trehalose-6-phosphate phosphatase TERM 348 374424 - 374434 + G 71 -2.4 -4.59773 | overlap 374425 374426 TGGAGATCACCGATT TCGC GCC GCGC TTTTTCCGGCTCGGG TERM 349 374795 - 374754 - g 78 -12.1 -3.78953 | overlap 374755 374757 ACTTCGAGCAGGAAA CCACCGCCTACTGGCGCCT GTGG AGCCGCCGGCTGGCGGTGC CGCGCGAATGGCAGG TERM 350 374794 - 374755 - g 72 -15.6 -2.87051 | overlap 374754 374757 CTTCGAGCAGGAAAC CACCGCCTACTGGCGCCT GTGG AGCCGCCGGCTGGCGGTG CCGCGCGAATGGCAG TERM 351 375592 - 375604 + G 73 -10.5 -3.86015 | CAACTTCATCGATCC GCGCG ACC CGCGC TTTATCGCCACCGTC RALTA_A0371 374072 - 375937 + | putative Glycoside hydrolase, family 15 otsA 376013 - 377404 + | trehalose-6-phosphate synthase RALTA_A0373 377437 - 377796 + | putative Pterin-4-alpha-carbinolamine dehydratase TERM 352 377935 - 377900 - T 76 -13.2 -3.41961 | opp_overlap 377900 AGGAGCATCAACGAA GCGAAGGCCGTCGCTA TTGC CAGCGCCGGCCCTCTC CCCCGGCCCCTCTCC RALTA_A0374 378619 - 378014 - | hypothetical protein TERM 353 378457 - 378512 + g 71 -11.1 -3.65046 | gap 3 GCAGCGCCGCGGCCA GCGTGCGGGCGCTGC-GCCAGGC-GACG GAG CGTCCGCCGGGCAGCACCTCCAGCA-GC TTGTTGCGCTGGCCG coxI 379676 - 378639 - | carbon monoxide dehydrogenase accessory protein; may be involved in the anchoring of CO dehydrogenase to the cytoplasmic membrane coxG 380206 - 379649 - | carbon monoxide dehydrogenase accessory protein; may be involved in the anchoring of CO dehydrogenase to the cytoplasmic membrane TERM 354 379714 - 379752 + gr 100 -15.9 -4.41716 | gap 1 CTGTCTGTTCATTCT CGCCTGCGGCTG-CGGCG GGGG CGCCCTCGGCCGCTGGCG TTTCTTGTGTGGTGT coxE 381447 - 380197 - | carbon monoxide dehydrogenase accessory protein; may be involved in the addition of the Cu-ion to CoxL coxD 382353 - 381457 - | carbon monoxide dehydrogenase accessory protein, putative ATPase; may be involved in the attachment of the sulfido group to the Mo-ion to CoxL cooxM 383344 - 382544 - | Carbon monoxide dehydrogenase medium chain (CO dehydrogenase subunit M) (CO-DH M) coxL 385828 - 383450 - | Carbon monoxide dehydrogenase large chain (CO dehydrogenase subunit L) (CO-DH L) TERM 355 385634 - 385655 + g 79 -15.1 -3.35679 | CACGGCGATCACGCC GGGCGCGGC CAGC GCCGCGCTC TTGTCGATCGCGCGG coxS 386344 - 385841 - | Carbon monoxide dehydrogenase small chain (CO dehydrogenase subunit S) (CO-DH S) RALTA_A0382 386664 - 387242 + | conserved hypothetical protein; putative TRANSMEMBRANE PROTEIN TERM 356 388819 - 388799 - g 76 -2.3 -4.8048 | CGCCGAGACCAAAAA GCCCGGCGG CGC CATCCTGGC CGGCCTTGAGCACCT RALTA_A0383 387426 - 391400 + | putative FAD/FMN binding Fe-S oxidoreductase RALTA_A0384 391590 - 392027 + | conserved hypothetical protein; putative nucleotide-binding protein, histidine triad motif TERM 357 392403 - 392387 - g 74 -13.7 -3.28712 | CCGCGTGTTCTACAA CGCGCTG GAG CAGCGCG ACTATGCCTCGTTCA RALTA_A0385 392157 - 394022 + | putative ABC TRANSPORTER, ATP-binding membrane component RALTA_A0386 394111 - 394527 + | conserved hypothetical protein, DUF971 TERM 358 394642 - 394588 - g 72 -9.3 -4.07568 | gap 1, opp_overlap 394599 394604 394606, overlap 394570 394599 394600 394606 394607 CTTCGGGTTCGAAAA GGTCGACGAAACGGAAAAGGCCGGCA AGGT TGCCGGCGTATTCCATTCGGTGG-CC AGCAAGTACGACGTG TERM 359 394632 - 394599 - g 74 -11.7 -3.75863 | opp_overlap 394599 394604 394606, overlap 394588 394600 394606 394607 AAAAGGTCGACGAAA CGGAAAAGGCCGGCA AGGT TGCCGGCGTATTCCA TTCGGTGGCCAGCAA TERM 360 394625 - 394606 - g 78 -9.2 -4.37711 | opp_overlap 394604 394599 394606, overlap 394600 394599 394588 394607 CGACGAAACGGAAAA GGCCGGCA AGGT TGCCGGCG TATTCCATTCGGTGG ubiE 394559 - 395290 + | bifunctional: 2-octaprenyl-6-methoxy-1, 4-benzoquinone methylase; S-adenosylmethionine:2-DMK methyltransferase RALTA_A0388 395353 - 396336 + | conserved hypothetical protein, COG4395 TERM 361 396386 - 396407 + F 100 -13.7 -5.27335 | opp_overlap 396383 396382 396386 GTAGCTTAGAATGGA GGCCCACGT GAAA GCGTGGGCC TTTTTGTTTGGGACG RALTA_A0389 396463 - 397155 + | conserved hypothetical protein, DUF1243 TERM 362 398053 - 398063 + G 71 -2.4 -4.65895 | TCTTCACCCAGGTGT TCCG CGA CGGC TTTTTCCATGCCGAC TERM 363 398308 - 398296 - g 71 -10.5 -3.67976 | opp_overlap 398299 TCGAGGAACTGGAAA GCGCG GTG CGCGC CTGCTGCGAGCCGTA TERM 364 398698 - 398744 + G 70 -8.5 -3.86015 | gap 2, opp_overlap 398669 398708 TGGTGCTGGAGCAGC GCCGCACCAACCGGCTGCTCGGC ACC GCGGTGCTGCTGGC-GG-GCGGC TTTGTCGCCGGCATC ubiB 397221 - 398798 + | 2-octaprenylphenol hydroxylase of ubiquinone biosynthetic pathway RALTA_A0391 398836 - 399456 + | putative Thiopurine S-methyltransferase TERM 365 399494 - 399526 + F 100 -8.4 -5.40072 | gap 1, overlap 399469 399496 TTGTGGCGAAGCCGG TGCCTTGCGTGGCGC ATTC GCGCCA-GCGGGGAA TTTTTTTCGCCCGCG TERM 366 399698 - 399708 + F 74 -4.6 -4.56597 | CCAGCGCCCAGCCGC CCGG CAT TCGG TTTTTCGCCACAAGG RALTA_A0392 399748 - 401184 + | putative SODIUM/SOLUTE SYMPORTER TERM 367 401657 - 401630 - g 78 -17 -2.70932 | gap 1 CGCCTGCCGCAAGCA CCACC-GCGGCCG CGC CGGCCGCCGGCGG TTGCGGCAGCGCCTG RALTA_A0393 401350 - 401685 + | hypothetical protein RALTA_A0394 401699 - 402409 + | conserved hypothetical protein, DUF502; putative TRANSMEMBRANE PROTEIN TERM 368 402426 - 402455 + F 100 -16.5 -4.08394 | gap 1, opp_overlap 402423 402419, overlap 402425 CCTCCAAACTGATCA CG-GGCTGCCCGAT GCT GTCGGGCAGCCGCG TTTTACCGGGAATCT aspS 402475 - 404283 + | aspartate tRNA synthetase TERM 369 404306 - 404340 + F 100 -18.1 -4.57073 | gap 1, opp_overlap 404315, overlap 404315 CGGGTCGCATGATCC GCAAGAAAAGCCGCGC GATT GCGCGGCTTTT-TTGC TTTTTGCGCAACATC TERM 370 404315 - 404332 + F 100 -14.1 -5.54079 | opp_overlap 404315, overlap 404306 TGATCCGCAAGAAAA GCCGCGC GATT GCGCGGC TTTTTTGCTTTTTGC TERM 371 404332 - 404315 - f 100 -14.1 -4.64676 | opp_overlap 404315 404306 TGATCCGCAAGAAAA GCCGCGC GATT GCGCGGC TTTTTTGCTTTTTGC RALTA_A0396 404487 - 405404 + | conserved hypothetical protein; putative TRANSMEMBRANE PROTEIN TERM 372 405421 - 405447 + F 73 -11.5 -3.59979 | gap 1, opp_overlap 405379, overlap 405406 405430 405430 CGGCCAGCGCCTGCG GCGCCCCGCGCG CAGC CGC-CGCGGCGC TTTCCCGTGGCAAGC TERM 373 405430 - 405476 + F 100 -25.3 -2.9585 | gap 2, opp_overlap 405379, overlap 405406 405421 405430 405451 CCTGCGGCGCCCCGC GCGCAGCCGCCGCGGCGCTTTCC CGT GGCAAGCGC-GCG-CGGCTGCGC TATCCTTGGGTTTGT TERM 374 405451 - 405486 + F 76 -7.4 -4.3255 | gap 1, overlap 405430 405430 405483 CCGCCGCGGCGCTTT CCCGTGGCAAGCGC-GC GCG GCTGCGCTATCCTTGGG TTTGTTCCTTGGCCC TERM 375 405974 - 405923 - g 77 -17.3 -2.53911 | gap 3, overlap 405951 GCAATGCCGAAGCCA TCCGCCAGCTGGCGTGGCGCGCAGGC AAG GCCGGCGCGCCG-GCC-GC-GGCAGA TGCCGATGCCGGCCA nudB 405508 - 406017 + | dATP pyrophosphohydrolase RALTA_A0399 406014 - 406796 + | putative metal dependent endonuclease/phosphatase mobB 407384 - 406863 - | MOLYBDOPTERIN-GUANINE DINUCLEOTIDE BIOSYNTHESIS PROTEIN B TERM 376 408098 - 408135 + G 70 -15.6 -2.78935 | gap 1 GGTGCAGGTCAGCGG GCCGCT-GGTGGACCGC ATCGC GCTGTCCGCCGAGCGGC TGTGGTGGCGGCTGT RALTA_A0401 407478 - 408824 + | putative cardiolipin synthase; putative exported protein TERM 377 408979 - 408990 + F 84 -4.4 -5.15969 | GCGCCAGAATAATCT GAAC GACC GTTC TTTTTTGGCTTAGAC RALTA_A0402 409118 - 409759 + | putative transcriptional regulator, tetR family RALTA_A0403 409835 - 411622 + | putative ACYL-COA DEHYDROGENASE OXIDOREDUCTASE RALTA_A0404 411752 - 414175 + | putative 3-HYDROXYACYL-COA DEHYDROGENASE OXIDOREDUCTASE RALTA_A0405 414200 - 415396 + | putative 3-ketoacyl-CoA thiolase TERM 378 415403 - 415434 + F 71 -10.8 -3.50393 | opp_overlap 415398, overlap 415404 CGCGTCTAAACGCGC CTGCGGGACGGTTC TTCG GAACTGTCCCGCCC TTCTGTCAGGTGAAG TERM 379 415404 - 415433 + F 75 -14.3 -2.70022 | opp_overlap 415398, overlap 415403 GCGTCTAAACGCGCC TGCGGGACGGTTC TTCG GAACTGTCCCGCC CTTCTGTCAGGTGAA RALTA_A0406 415509 - 416465 + | conserved hypothetical protein, DegV family RALTA_A0407 416486 - 417262 + | putative ENOYL-COA HYDRATASE RALTA_A0408 417759 - 417355 - | putative Acyl-CoA thioester hydrolase RALTA_A0409 417870 - 419768 + | putative ABC transport system, ATPase membrane component TERM 380 419983 - 420005 + G 75 -9.8 -4.09685 | opp_overlap 419979 419978 CATGCCCAAATCCCG CGCTGCGCAA GTG TTGCCCGGCG TTTTCACGGCTGCCA TERM 381 420626 - 420643 + G 70 -3.3 -4.42238 | CTGGTGCGCGGCGAC CTCGATG CCAT CACCGGG TTTTCGTTCACGTCG RALTA_A0410 419969 - 421111 + | putative precursor ABC-type nitrate/sulfonate/bicarbonate transport system, periplasmic component RALTA_A0411 421108 - 421950 + | putative ABC TRANSPORTER, ATP-BINDING component RALTA_A0412 421963 - 422739 + | putative ABC transport system, inner membrane component RALTA_A0413 423528 - 422758 - | putative transcriptional regulator, gntR ubiC families RALTA_A0414 423757 - 425256 + | putative AMP-dependent synthetase/ligase TERM 382 425586 - 425555 - g 72 -8.6 -4.07885 | opp_overlap 425583 GAGTTCGCCGGAAAA CCTGCAGGCCGG TGTGGCGG CGGGCCTGCTGG CGGTGGCCAGCCAGT TERM 383 425897 - 425879 - g 80 -16 -3.24188 | CCATATCACCATCAA CGCCACCG GCG CGGTGGCG GCGGTGCTGGGCGAC RALTA_A0415 425253 - 426077 + | putative citrate synthase RALTA_A0416 426120 - 427079 + | Chlorohydroquinone/hydroquinone 1,2-dioxygenase (Hydroquinone meta-cleavage dioxygenase) RALTA_A0417 427131 - 427790 + | putative Phospholipase/Carboxylesterase TERM 384 428426 - 428393 - g 71 -11.1 -3.62597 | gap 2 CTGATGGCCGAAGAA GGCATC-C-GCGCGC TGGCCG GCGCGCTGCGATGCC TGAAGCGCGATGCCT TERM 385 428635 - 428614 - g 74 -13.7 -3.30124 | gap 1 TGCCATGGCCTACAA CGCC-GCGGC GGC GCCGCAGGCG ATGGTGCGCATTGCG RALTA_A0418 427811 - 428869 + | Maleylacetate reductase RALTA_A0419 428916 - 429257 + | hypothetical protein TERM 386 429273 - 429259 - f 86 -12.8 -4.0371 | CAGCCGCCACATAAA GCCGCC GCC GGCGGC AGCCGGCAAGCCCGC RALTA_A0420 429372 - 430337 + | putative Glycosyl hydrolase, BNR repeat TERM 387 434374 - 434394 + G 76 -14 -3.4252 | opp_overlap 434367 434364 AACAACAGTCAGTTC CTGGCGCG GCTGA CGCGCCAG TTCTGATGCATCCCA RALTA_A0423 432820 - 434400 + | conserved hypothetical protein, DUF 1302 RALTA_A0424 434426 - 435682 + | conserved hypothetical protein; putative exported protein TERM 388 435694 - 435712 + F 78 -10.2 -4.09685 | overlap 435695 GTAGTGCCATTCGCA AGCGCGGT ACG ACCGCGCG TTTTCCGGGCTCGGC TERM 389 435695 - 435711 + F 75 -13.7 -3.05597 | overlap 435694 TAGTGCCATTCGCAA GCGCGGT ACG ACCGCGC GTTTTCCGGGCTCGG TERM 390 436078 - 436050 - g 71 -11 -3.55444 | gap 1, opp_overlap 436036, overlap 436068 TCGTCAGCGGCGAAA CCTGGCGT-GCTG ACAT CAGCCACGCCGGG CGCTGGTGCGACGTG RALTA_A0425 435761 - 436219 + | hypothetical protein RALTA_A0426 436280 - 437224 + | putative TRANSCRIPTIONal REGULATOR, lysR family gdhA2 437342 - 438649 + | GLUTAMATE DEHYDROGENASE (NAD(P)+) OXIDOREDUCTASE TERM 391 438732 - 438761 + F 100 -22.9 -3.46602 | TTCATGACCGTCAGA CGCGGTCTCCGGC AAGC GCCGGAGGCCGCG TTGTCGTATCCGGAC TERM 392 438827 - 438852 + F 72 -11.9 -3.35597 | overlap 438825 GGAGAAAACCCAGTT GTATTGCGCCG GATG CTGCGCAATAC TGTTTCACCAGTGGG gltI1 438916 - 439815 + | glutamate/aspartate transport protein; ABC superfamily, periplasmic binding component TERM 393 439835 - 439861 + F 100 -15.3 -4.56597 | opp_overlap 439839, overlap 439839 ACCGGGACAGCGAGC GAAACGGAAGG CATGT CCTTCCGTTTC TTTTTGAGGACGCAA TERM 394 439839 - 439857 + F 100 -10.3 -4.85782 | opp_overlap 439839, overlap 439835 GGACAGCGAGCGAAA CGGAAGG CATGT CCTTCCG TTTCTTTTTGAGGAC TERM 395 439857 - 439839 - f 70 -10.3 -3.67792 | opp_overlap 439839 439835 GGACAGCGAGCGAAA CGGAAGG CATGT CCTTCCG TTTCTTTTTGAGGAC gltJ 439878 - 440606 + | glutamate/aspartate transport protein; ABC superfamily, membrane component TERM 396 441229 - 441243 + G 79 -2.1 -4.88293 | overlap 441221 441218 TGCTGTTCGCCGGCC TGGTG TACTT CATCA TTTGTTTTTCCGCTT gltK 440616 - 441299 + | glutamate/aspartate transport protein; ABC superfamily, membrane component gltL 441296 - 442030 + | glutamate/aspartate transport protein; ABC superfamily, atp_binding component TERM 397 442057 - 442074 + T 100 -12.7 -5.14563 | opp_overlap 442057 ACTCATGAAAAAAAA GGGACGC TTCG GCGTCCC TTTTTTCCTGGCGCG TERM 398 442074 - 442057 - T 100 -12.7 -5.86965 | opp_overlap 442057 ACTCATGAAAAAAAA GGGACGC TTCG GCGTCCC TTTTTTCCTGGCGCG RALTA_A0432 442942 - 442112 - | putative glutamine amidotransferase ttuC3 443154 - 444173 + | tartrate dehydrogenase ttuD3 444170 - 445477 + | HYDROXYPYRUVATE REDUCTASE OXIDOREDUCTASE PROTEIN TERM 399 446222 - 446248 + G 77 -3.4 -4.72272 | opp_overlap 446202 CGCGAGGCGCTGGTG GCGGCCGCCACC TCG GGCAGCGAGCGC TTTTTCCTGGGAACC pyrC 445523 - 446557 + | dihydro-orotase TERM 400 446604 - 446636 + G 74 -12 -3.5936 | gap 1, opp_overlap 446580, overlap 446605 446608 GAGCCTTTCGCCGCC GCACTGGCCGGGATC GACT GGTCCCGGCC-GTGG TTTCAACCCTTTGCG TERM 401 446605 - 446635 + G 70 -15.5 -2.75294 | gap 1, overlap 446604 446608 AGCCTTTCGCCGCCG CACTGGCCGGGATC GACT GGTCCCGGCC-GTG GTTTCAACCCTTTGC TERM 402 446608 - 446633 + G 72 -14.7 -2.91888 | overlap 446605 446604 CTTTCGCCGCCGCAC TGGCCGGGATC GACT GGTCCCGGCCG TGGTTTCAACCCTTT TERM 403 446745 - 446765 + G 73 -10.4 -3.85698 | gap 1, opp_overlap 446745 446744, overlap 446723 TCGGGCCTGCACAAC GCGC-GCGG CCTG CCGCTGCGC TTTGTCCCCCAGCAG TERM 404 447039 - 447066 + G 100 -12 -4.82901 | gap 1, opp_overlap 447032 447030 GACGAACATGCCGAG GC-GCTGCGAGGC TTC GCCTGGCAGCAGC TTTTTGTCGCGCAGC RALTA_A0436 446562 - 447401 + | hypothetical protein RALTA_A0437 448243 - 447821 - | conserved hypothetical protein; Predicted redox protein, regulator of disulfide bond formation; osmC-like motif TERM 405 448674 - 448693 + H 100 -9.3 -5.75945 | opp_overlap 448674 TTTGGTGGATTCAAA CCCAAGC TCAAAC GCTTGGG TTTTTTTTCGCCCCT rplM 448972 - 449400 + | 50S ribosomal subunit protein L13 rpsI 449413 - 449805 + | 30S ribosomal subunit protein S9 TERM 406 449854 - 449872 + F 100 -11.7 -5.86061 | opp_overlap 449848 449854 GCGAGACCAGAAAAA CCGCACG CTGGC CGTGCGG TTTTTTTTCGTCCGC TERM 407 449872 - 449854 - f 100 -11.7 -4.95155 | opp_overlap 449854, overlap 449848 GCGAGACCAGAAAAA CCGCACG CTGGC CGTGCGG TTTTTTTTCGTCCGC RALTA_A0440 450064 - 450540 + | conserved hypothetical protein, DUF583 RALTA_A0441 450643 - 451011 + | conserved hypothetical protein, HesB family TERM 408 451028 - 451057 + T 70 -12.3 -3.21218 | opp_overlap 451035, overlap 451035 CGATCCCGCGCTGAC AAAAAAACGCACC TCCG GGTGCGTTTTTTC TTGGTCGTGCCGCCT TERM 409 451035 - 451050 + T 100 -10.4 -5.52023 | opp_overlap 451035, overlap 451028 GCGCTGACAAAAAAA CGCACC TCCG GGTGCG TTTTTTCTTGGTCGT TERM 410 451050 - 451035 - T 100 -10.4 -5.60993 | opp_overlap 451028 451035 GCGCTGACAAAAAAA CGCACC TCCG GGTGCG TTTTTTCTTGGTCGT RALTA_A0442 451869 - 451072 - | putative deoxygenase, Phytanoyl-CoA dioxygenase family TERM 411 451721 - 451702 - G 81 -7 -4.57837 | overlap 451704 ATAGTCCTCGAAAAA GCGCCCAC CCTC GCCGGCGC GCACGTTCTCGATCG RALTA_A0443 451961 - 452875 + | putative transcriptional regulator, lysR family RALTA_A0444 453990 - 452863 - | conserved hypothetical protein, UPF0075 RALTA_A0445 455392 - 454001 - | putative metallopeptidase, M23B family TERM 412 455083 - 455051 - G 72 -13.3 -3.21099 | GTTCTTGACGATGAA CGCCTGCGCGTCGGC ATC GTCCACGCCCAGGCG CTTGAGCAGGCTGGC tyrS 455643 - 456884 + | TYROSYL-TRNA SYNTHETASE dtd 456892 - 457353 + | D-Tyr-tRNA(Tyr) deacylase RALTA_A0448 457413 - 458072 + | putative Phosphatidylethanolamine-binding protein RALTA_A0449 458160 - 458834 + | putative PHOSPHOGLYCERATE MUTASE RALTA_A0450 459568 - 458843 - | putative membrane lipoprotein, DUF165 TERM 413 459712 - 459693 - R 100 -13.6 -4.85782 | CGGCCGAAAAAGAAA TTCCCGGC CTGG GCCGGGAA CCGTGTCGGAGAGGG RALTA_A0451 460343 - 459759 - | putative lipoprotein RALTA_A0452 460981 - 460388 - | conserved hypothetical protein; putative exported protein ruvB 462244 - 461180 - | ATP-dependent DNA helicase, subunit B of RuvABC Holliday junction resolvasome ruvA 462885 - 462304 - | subunit A of RuvABC Holliday junction resolvasome, regulatory subunit TERM 414 462950 - 462918 - R 74 -9.8 -3.75169 | gap 2, overlap 462920 CAGGAGGTCAGGAAA GAGGCGGCCGCCAGTG TAG CGC-GGCGGCCACC-C GGCCGGTTCAGCGCG TERM 415 462949 - 462920 - R 79 -13.5 -3.4582 | gap 1, overlap 462918 GGAGGTCAGGAAAGA GGCGGCCGCCAGTG TAG CGC-GGCGGCCACC CGGCCGGTTCAGCGC RALTA_A0455 464226 - 462958 - | Glycerophosphoryl diester phosphodiesterase TERM 416 463470 - 463450 - G 70 -8.9 -3.93673 | overlap 463452 463453 GAAACACTGGATAAA CACCGGCGC ATT GCGCAGGTA GGGCTGCGCGCGCAC TERM 417 464280 - 464242 - R 79 -9.6 -4.13767 | gap 3, opp_overlap 464250, overlap 464244 GGCCCGATTGTAAAA GACGCGCGCGCATGGCTGC GGCA GC-GCCA-GCGC-CGCGGC CGGCGTGTTCAGCCG TERM 418 464278 - 464244 - R 73 -10.8 -3.6692 | gap 3, opp_overlap 464250, overlap 464242 CCCGATTGTAAAAGA CGCGCGCGCATGGCTGC GGCA GC-GCCA-GCGC-CGCG GCCGGCGTGTTCAGC TERM 419 464250 - 464285 + r 71 -13.3 -3.01712 | gap 2, opp_overlap 464244 464242 TGTAAAAGACGCGCG CGCATGGCTGCGGCAGC GCCA GC-GCCGCGGCCG-GCG TGTTCAGCCGACCAG ruvC 464834 - 464289 - | endodeoxyribonuclease, subunit C of RuvABC Holliday junction resolvasome purH 466563 - 464989 - | bifunctional: IMP cyclohydrolase (N-terminal); phosphoribosylaminoimidazolecarboxamide formyltransferase (C-terminal) RALTA_A0458 466819 - 466586 - | putative transcriptional regulator, FIS family TERM 420 466821 - 466837 + r 84 -2.1 -5.3798 | GCGTTGCGGCTCATG CGGCAAG CAA CTCCCCG TTTTTGTTGTTGTTC dusB 467877 - 466816 - | tRNA-dihydrouridine synthase B ubiH 469438 - 468200 - | 2-octaprenyl-6-methoxyphenol hydroxylase, FAD/NAD(P)-binding RALTA_A0461 469898 - 469419 - | hypothetical protein pepP 471307 - 469895 - | proline aminopeptidase P II RALTA_A0463 472115 - 471390 - | putative sugar-phosphate nucleotidyl transferase RALTA_A0464 472438 - 472112 - | conserved hypothetical protein, COG4392; putative transmembrane protein RALTA_A0465 473238 - 472435 - | putative branched-chain amino acid permease; AzlC family TERM 421 472744 - 472696 - G 82 -6.7 -4.72986 | gap 2, overlap 472698 CAGCGGCAGGAAAAA GTCCAGCG-GCCAGT-GGCGC GGCACCTGG GCGCCGACCAGCACGCCGGCC AGCGTCGACAGCTGC RALTA_A0466 474277 - 473243 - | putative Aminoglycoside phosphotransferase TERM 422 475299 - 475350 + G 78 -12.9 -3.72695 | gap 1, overlap 475300 TCTTCGGCGTGCCGG TCGCGGCGGCACCCG-CGTTCAGC TTCCC GCTGAACGACGACCGCCGCAGCGG TTTCCTGCCGCCGCT imp 474542 - 476983 + | exported protein required for envelope biosynthesis and integrity (ORGANIC SOLVENT TOLERANCE TRANSMEMBRANE PROTEIN) surA 476993 - 478462 + | peptidyl-prolyl cis-trans isomerase (PPIase), involved in maturation of outer membrane proteins TERM 423 479210 - 479194 - g 71 -10.8 -3.53811 | CGCACGCCGGCGAAA GCGGCC ACATG GGCCGC GAAGAGATCGACATC pdxA1 478512 - 479600 + | 4-hydroxy-L-threonine phosphate dehydrogenase, NAD-dependent (pyridoxine phosphate biosynthetic protein) ksgA 479618 - 480451 + | S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase (kasugamycin resistance) RALTA_A0471 480529 - 481566 + | Tryptophanyl-tRNA synthetase(Tryptophan--tRNA ligase) (TrpRS) TERM 424 481590 - 481622 + T 95 -20 -3.23274 | gap 1, overlap 481585 ACGTGCTGAGGGTTT GC-TCCCTCTCCCGC GCGC GCGGGAGAGGGAAGC TTCCGTTCTCACCCC RALTA_A0472 482536 - 481631 - | putative membrane lipoprotein, DUF6 TERM 425 482308 - 482291 - G 76 -14.1 -3.45571 | overlap 482285 GGCCCCAAACAGCAA GCCGGCC AGCA GGCCGGC GTTGAGCGTGCCGTC gloA 482955 - 482548 - | glyoxalase I, nickel isomerase RALTA_A0474 483910 - 483050 - | putative metal-dependent hydrolase plsC1 484671 - 483907 - | 1-acyl-sn-glycerol-3-phosphate acyltransferase TERM 426 484159 - 484177 + g 75 -10.2 -4.07568 | overlap 484148 484150 484152 484170 CGCCAGGCGCGCGCC GCCGCTCT TGT AGCGCGGC TTTTCCAGGCCGGAA TERM 427 484726 - 484778 + r 84 -16.9 -2.72344 | gap 2, opp_overlap 484693 484694 484692 GCGGGCTCGGTCAGC CGGCGGCGCCGTGGCCGCCCTGGGC ACTCG GCGC-GGGCTGCCGCTGC-CCGCCG TCGTTGCCGGTCAGC gmhB2 485329 - 484721 - | D-glycero-D-manno-heptose 1,7-bisphosphate phosphatase TERM 428 485053 - 485100 + g 82 -8.9 -4.4767 | opp_overlap 485057, overlap 485054 485057 485081 CGGTATGGGGGCAGA AGAACACCGCCTCGACGCGGC CGCCCA GCCGCGCCAGCGCGGTGTGCA TTTTCTCGTGCATGG TERM 429 485054 - 485099 + g 70 -12.4 -3.2812 | opp_overlap 485057, overlap 485053 485057 485081 GGTATGGGGGCAGAA GAACACCGCCTCGACGCGGC CGCCCA GCCGCGCCAGCGCGGTGTGC ATTTTCTCGTGCATG TERM 430 485096 - 485057 - G 88 -15.6 -3.79113 | opp_overlap 485054 485053 485057 485081 ATGGGGGCAGAAGAA CACCGCCTCGACGCGGCC GCCC AGCCGCGCCAGCGCGGTG TGCATTTTCTCGTGC glyS 487496 - 485373 - | glycine tRNA synthetase, beta subunit TERM 431 485643 - 485664 + g 71 -11.5 -3.61715 | opp_overlap 485633 GAACAGCGCCGGGTT CACCGCGCC GACC GGCTCGGTG TTCTTGCGCAGGATA RALTA_A0478 488173 - 487535 - | conserved hypothetical protein; putative exported protein glyQ 489120 - 488170 - | glycine tRNA synthetase, alpha subunit TERM 432 488364 - 488387 + g 82 -14.6 -3.53091 | gap 1 GCACCTGTTCGTAGG CCGGCA-GCGC CAG GCGCGTGCCGG TTTCCGCAGCGGCGT TERM 433 489448 - 489475 + G 72 -14.8 -2.87564 | gap 1 GGTATGCAGGCACGG CGGCCGCCG-GGC CTT GCCGCGGCAGCCG TATGTCAGGAACTGA RALTA_A0480 489436 - 489606 + | hypothetical protein cutE 491305 - 489692 - | apolipoprotein N-acyltransferase, copper homeostasis protein TERM 434 490044 - 490062 + g 75 -8.8 -4.15044 | GCCGGCGCCGGCTGC TGGCGCAG CGT CTGCGCGA TTTCTTCGCCGAACA TERM 435 491307 - 491332 + r 80 -14.7 -3.17723 | GCGGGAAGCTTCATG CGCTGGCGGCG CTGG CGCTGTCAGCG TTGGCTTCGCGATGC corC 492189 - 491302 - | Magnesium and cobalt efflux protein RALTA_A0483 493077 - 492322 - | putative metal-dependent hydrolase, COG0319; putative diacylglycerol kinase RALTA_A0484 494079 - 493078 - | putative phosphate starvation-inducible ATPase, PhoH-like protein TERM 436 493952 - 493980 + g 72 -13.2 -3.12351 | gap 1, overlap 493953 493971 GTCATGCGGTGGCCG C-GGCGCTGGATG GTCA CGTCCAGCGCCTG TTCGATCTGGCGCAG TERM 437 493953 - 493978 + g 80 -16.9 -3.12327 | overlap 493952 493971 TCATGCGGTGGCCGC GGCGCTGGATG GTCA CGTCCAGCGCC TGTTCGATCTGGCGC miaB 495481 - 494129 - | isopentenyl-adenosine A37 tRNA methylthiolase, Fe-S protein TERM 438 495559 - 495529 - R 77 -12.5 -3.61517 | overlap 495531 AGGGTGTTGCAACAA CACGGCCGGCGTG TGGGG CACGCCGGTCGCA CTTCGGGGGTGGTTA TERM 439 495557 - 495531 - R 84 -15.1 -3.38812 | overlap 495529 GGTGTTGCAACAACA CGGCCGGCGTG TGGGG CACGCCGGTCG CACTTCGGGGGTGGT RALTA_A0486 495961 - 495572 - | conserved hypothetical protein; putative exported protein RALTA_A0487 497851 - 496166 - | putative voltage-gated chloride channel, clcB-like TERM 440 497002 - 496977 - G 71 -2.4 -4.58395 | overlap 496978 TGGATGGTGGAAAAA CCGTTGCCGA CGACCT CCGGCACCGC CATGGCCAGCACGCC TERM 441 497363 - 497391 + g 78 -16 -3.01712 | GGCCAGGCCCGCCGC TGCGCCGCAGGC GGTCA GCATGCGGCGCA TGTTGGAGCCGCCGC TERM 442 498389 - 498347 - g 73 -12.6 -3.53091 | gap 1, overlap 498348 AGCTGCTGTCCGAAA CCGCGGCACGCCAGGCCGG CGGCGC CCAGCGCGGCG-GCCGCGT GGCGGTGCGCGCGCT TERM 443 498388 - 498348 - g 74 -16.1 -2.71712 | gap 1, overlap 498347 GCTGCTGTCCGAAAC CGCGGCACGCCAGGCCGG CGGCGC CCAGCGCGGCG-GCCGCG TGGCGGTGCGCGCGC TERM 444 499636 - 499585 - g 72 -14.3 -3.16564 | gap 1 CCGGCACGCCAGCAA CGGGCCGCGGCCCAGC-CCGCGCG CCAGC CGCACGACGCTGCGCCGGCACCCG CGCGCAACCGCCGTC rhlE1 498151 - 499701 + | ATP-dependent RNA helicase hydrolase RALTA_A0489 499720 - 500766 + | putative aminoglycoside phosphotransferase TERM 445 500762 - 500746 - T 83 -15.1 -3.18264 | GCGCTGATGGACGAA GCGCCCC TGT GGGGCGC CTGAAGCCTGCCCGG TERM 446 500769 - 500814 + T 78 -15.3 -2.78395 | gap 1 GTGGGGCGCCTGAAG CCTGCCCGGACGGG-GGCGCCG TTG CGGCACCGCCCCTCCGTGTGGG TGCTTAACCTTTCTT RALTA_A0490 501258 - 500818 - | putative Universal stress protein TERM 447 501589 - 501559 - H 86 -16.2 -3.17723 | gap 1 CCACCCCCAATGCAA GCCGCCT-CGCGC CCTGGC GCGCGCAGGCGGC GAACCGGAGACAACC RALTA_A0491 501608 - 502675 + | Alpha-methylacyl-CoA racemase (2-methylacyl-CoA racemase) (2-arylpropionyl-CoA epimerase) TERM 448 503124 - 503163 + G 71 -10.6 -3.72576 | gap 1, opp_overlap 503121 CCGGCAACGACACTG CCCAG-GCGCCGGTGCG GGCACTG CGCGCCGGCGCGCACGG TTTCGTGGCCAAGCA RALTA_A0492 502877 - 503491 + | putative transcriptional regulator, response receiver CheY domain, HTH LuxR domain RALTA_A0493 503585 - 505174 + | conserved hypothetical protein, COG2989; putative exported protein RALTA_A0494 505210 - 505797 + | conserved hypothetical protein, DUF882, COG3108; putative exported protein TERM 449 505909 - 505872 - T 84 -17.1 -2.82327 | opp_overlap 505878, overlap 505878 CCGCGAGACCCAAAG CAAAAAGCCGCGAACCC TTGC GGGATCGCGGCTTTTCA AATAGATGGTGGCGA TERM 450 505903 - 505878 - T 100 -16.1 -5.00138 | opp_overlap 505878, overlap 505872 GACCCAAAGCAAAAA GCCGCGAACCC TTGC GGGATCGCGGC TTTTCAAATAGATGG TERM 451 505878 - 505903 + T 100 -16.1 -4.14739 | opp_overlap 505878 505872 GACCCAAAGCAAAAA GCCGCGAACCC TTGC GGGATCGCGGC TTTTCAAATAGATGG TERM 452 506101 - 506080 - T 100 -17.3 -5.60993 | opp_overlap 506080 CCGTGCATAAAAAAA CGGCAGGCC CGCG GGCCTGCCG TTCTGCTTGATGCCG TERM 453 506080 - 506101 + T 100 -17.3 -3.54029 | opp_overlap 506080 CCGTGCATAAAAAAA CGGCAGGCC CGCG GGCCTGCCG TTCTGCTTGATGCCG RALTA_A0495 507823 - 506126 - | putative TRANSPORTER, MSF family TERM 454 508095 - 508141 + r 71 -12.9 -3.09635 | ATCCGCGCCCGGGCC GCG-CGAGGCGCCTTGCGAGGGC ATT GCCGGCG-GCGGCGCCTCGACGC TTCGGTCATCGGCGT RALTA_A0496 508403 - 508071 - | hypothetical protein RALTA_A0497 509947 - 508400 - | putative sensor histidine kinase RALTA_A0498 510685 - 509996 - | putative response regulator, CheY family TERM 455 510980 - 510968 - g 75 -6.2 -4.48987 | overlap 510962 510969 CGCCGAGAAGCAAAA GGCG CTTGC CGCC GCGCTCTCCCAGATC recA 510921 - 511985 + | DNA strand exchange and recombination protein with protease and nuclease activity TERM 456 512016 - 512042 + F 100 -23.8 -4.8622 | CTGCGCCATCCGGAA GGCCGGGGCATC GCC GATGCCCCGGCC TTTTTGCTTGGCCCG RALTA_A0500 512097 - 512564 + | putative RecA REGULATORY PROTEIN RECX, COG2137 TERM 457 512638 - 512686 + F 79 -16.8 -2.52464 | gap 2, overlap 512633 512631 CGTTGCGTCATCGCG CCATGCCGGCGCCGGGTTCTTGTC GGG GGCGGGAGC-CGGTGCCGGC-TGG TGCATTGCGGCAAGG RALTA_A0501 512766 - 513596 + | hypothetical protein sucC 513686 - 514852 + | succinyl-CoA synthetase, beta subunit sucD 514941 - 515822 + | succinyl-CoA synthetase, alpha subunit, NAD(P)-binding TERM 458 515865 - 515894 + F 100 -17.9 -4.57073 | opp_overlap 515857, overlap 515868 GGAATGACGGCTGTG TGATGCCCCCGCC CTTC GGCGGGGGCATTG TTTTTCCGGCGAGTG TERM 459 515868 - 515891 + F 100 -19.6 -4.40561 | opp_overlap 515857, overlap 515865 ATGACGGCTGTGTGA TGCCCCCGCC CTTC GGCGGGGGCA TTGTTTTTCCGGCGA RALTA_A0504 516076 - 516771 + | conserved hypothetical protein; putative membrane protein, TerC family TERM 460 516794 - 516813 + F 100 -16.4 -4.8622 | opp_overlap 516781 CAGCCTATGCGGGAA GGGCGGCC AGCT GGCCGCCC TTTTTCGTTGGGCGC TERM 461 516867 - 516880 + F 74 -2.3 -4.8543 | overlap 516866 CGCCAACTAACTCAT GTGAG TGAT CGCAC TTTTTGTCGCGCTTG RALTA_A0505 517088 - 517582 + | type IV secretion system prepilin TERM 462 517621 - 517608 - f 74 -9.5 -3.90588 | opp_overlap 517608 GATGCTGTAACGAAA GCGCC TTCG GGCGC TTTTTCTTTGCCTCA TERM 463 517608 - 517621 + F 100 -9.5 -5.30616 | opp_overlap 517608 GATGCTGTAACGAAA GCGCC TTCG GGCGC TTTTTCTTTGCCTCA TERM 464 519240 - 519217 - g 79 -14.6 -3.30441 | opp_overlap 519223 GATCACGCCCGAGAA TGCCGCGGCA CTGC TGCCGCAGCA TGTGGCGGCGGTGCA TERM 465 519223 - 519256 + G 72 -13.9 -3.14931 | gap 1, opp_overlap 519217 GCCCGAGAATGCCGC G-GCACTGCTGCCGCA GCA TGTGGCGGCGGTGCAC TTGCTGCCGACTCCC RALTA_A0506 517679 - 519493 + | putative lipopolysaccharide biosynthesis protein RALTA_A0507 520442 - 519495 - | hypothetical protein TERM 466 519593 - 519549 - G 79 -18.6 -2.62184 | gap 2, overlap 519524 GGGCGGCGGATAGTA GTACCGCGGCGC-CGG-CGCCG GGA CGGCGGCCACGCGCCCCGGCAC GGGCACGCGATTGCC moaC 521172 - 520693 - | molybdenum cofactor biosynthesis protein C TERM 467 520999 - 521019 + g 86 -6.1 -5.03314 | GATCGCCGCCACGCG GGCGATG CCGATCA CGTCGCC TTTTTTGGCACTGCC TERM 468 521076 - 521110 + g 70 -12 -3.29144 | overlap 521077 GCTGCATGGTGATGG TGCCGGTGGCCACCGC GAC GCGGTGGGTGCTGGCC TTGTCGCCGACGTCG TERM 469 521378 - 521435 + G 85 -17.1 -3.15544 | GTCACATCGCGGCGC TGCCAGCCA-CTGCCG-CGCCGGCGGCGC CTGG GCGCC-CTGGCGGCGGCCGCTGGC-GGCG TTGCTGGCGCTGACC TERM 470 522127 - 522182 + G 79 -15.5 -3.28712 | gap 3, opp_overlap 522176 CGCGCAGCCCGGATG CGGCGGCGGCGCTGGCGATGGGCGG-GC AGG GCGCCGCC-ATCGCCAAC-CAGCTGTCG TTCTCGCGCGGCGCG RALTA_A0510 521247 - 523106 + | putative zinc metallopeptidase, putative precursor RALTA_A0511 523716 - 523126 - | hypothetical protein RALTA_A0512 524832 - 523753 - | putative enzyme with alpha/beta-hydrolase domain TERM 471 524849 - 524871 + r 70 -10.4 -3.65902 | opp_overlap 524852 CCGGCGATGTGGTAG CAACGGCCGC TGC GCGGCCGCGG TTTCAGTGCAATGCC TERM 472 524868 - 524852 - R 83 -15.1 -3.14931 | opp_overlap 524849 GCGATGTGGTAGCAA CGGCCGC TGC GCGGCCG CGGTTTCAGTGCAAT RALTA_A0513 525314 - 524874 - | hypothetical protein rfaF 526368 - 525346 - | ADP-heptose:LPS heptosyltransferase II RALTA_A0515 526681 - 526487 - | hypothetical protein ilvE 527697 - 526777 - | branched-chain amino-acid aminotransferase TERM 473 527782 - 527765 - H 77 -14.1 -3.30124 | GGGCATGGGTCACAA CGCGGCG CGGG CGCCGCG GCGGTCTAGAATGCC TERM 474 528063 - 528005 - g 70 -12.6 -3.34344 | gap 4, opp_overlap 528046 TCAGCGTCCAATGAA TCGCCGCCGGCCGACTGGCA-GCAGGCGCT GGA AGCGC-TGCGTGCCC-TCG-CCGGCACCGA TCCCGCCGCGGGCGC RALTA_A0517 527948 - 530941 + | putative DNA/RNA Helicase RALTA_A0518 531264 - 531064 - | hypothetical protein RALTA_A0519 531263 - 532279 + | conserved hypothetical protein, UPF0065 RALTA_A0520 533453 - 532314 - | putative transcriptional regulator; DNA-binding HTH domain LuxR family TERM 475 532643 - 532698 + g 80 -16 -3.14132 | gap 1 GGATCACCTGCGCCT GCCGGCCGGCGCTGTCGACGGCGCG CAGGGCC TGCGCCGGCTGC-GCGCTGGCCGGG TTGCTCACCGCGCGC TERM 476 532758 - 532786 + g 82 -19.6 -2.64616 | gap 1 CCAGCCGCCATCGTC GCG-CGCGGCGCC TGGC GGCGCCGCGACGC TGGTCTCGATCGACA RALTA_A0521 534656 - 533553 - | putative transcriptional Regulator, LuxR family TERM 477 534692 - 534729 + H 91 -9.1 -4.52415 | gap 2, opp_overlap 534690 534691 534689, overlap 534696 534697 GCGACAAAATAATGC GCGGCGCCGGTGGCGCG TCCGCT CGCGCC-CCGGCAT-GC TTTGTTGTTCTGGCT TERM 478 534696 - 534726 + H 70 -11.8 -3.20662 | gap 1, opp_overlap 534690 534691 534689, overlap 534692 534697 CAAAATAATGCGCGG CGCCGGTGGCGCG TCCGCT CGCGCC-CCGGCA TGCTTTGTTGTTCTG TERM 479 534697 - 534725 + H 76 -15.3 -2.51312 | gap 1, opp_overlap 534690 534691 534689, overlap 534696 534692 AAAATAATGCGCGGC GCCGGTGGCGCG TCCGCT CGCGCC-CCGGC ATGCTTTGTTGTTCT TERM 480 535609 - 535557 - g 73 -7.4 -4.14243 | overlap 535559 CACGGCATCGCAAAA TACGCGCCGATCGCCTGCGCCGGC CCGCT GCTGGCGGCCGAGATCGACGCGCT GGGCAAGGCGCTGGG TERM 481 535607 - 535559 - g 74 -12.2 -3.6692 | overlap 535557 CGGCATCGCAAAATA CGCGCCGATCGCCTGCGCCGGC CCGCT GCTGGCGGCCGAGATCGACGCG CTGGGCAAGGCGCTG pgk 535071 - 536267 + | phosphoglycerate kinase TERM 482 537004 - 536962 - g 88 -14.9 -3.71873 | CCACCGACATGGAAA TGG-CGCGCCAGCTGGCCGCC GTG GCCGGCCAGCCG-CACGGCCA CCGGGCCCGCATGAT pykA 536361 - 537797 + | pyruvate kinase II, glucose-stimulated fbaA 537848 - 538912 + | FRUCTOSE-BISPHOSPHATE ALDOLASE PROTEIN TERM 483 539967 - 539942 - g 70 -14.7 -2.71144 | GACCGCGGCGAAGTA CCGTGAGGCGC TGAC GCGCCTGACGG GCGAGGAATTGAAGT purC 539076 - 539984 + | PHOSPHORIBOSYLAMINOIMIDAZOLE-SUCCINOCARBOXAMIDE SYNTHASE purE 540104 - 540601 + | N5-carboxyaminoimidazole ribonucleotide mutase purK 540654 - 541898 + | phosphoribosylaminoimidazole carboxylase (AIR carboxylase), ATPase subunit RALTA_A0528 541912 - 542901 + | conserved hypothetical protein, Sua5/YciO/YrdC/YwlC family; putative double-stranded RNA binding domain RALTA_A0529 543406 - 543068 - | putative membrane component, COG4392 RALTA_A0530 544251 - 543403 - | conserved hypothetical protein; Putative branched-chain amino acid permease transmembrane protein, azlC motif TERM 484 544393 - 544381 - R 74 -4.7 -4.63932 | overlap 544382 544383 GAGTGCTTAACAAAA TGCCG TCG CGGCG TTGGCGGCAGGCCAC dacB 546041 - 544440 - | Serine-type D-Ala-D-Ala carboxypeptidase TERM 485 545028 - 544988 - G 82 -16.1 -3.28791 | gap 1, overlap 544991 AGTGGCGCGCCAGAA GCACCGCGCCGCGCGGCA CCTTGC CGCTGCGCAGCGCGG-GC AGGCGGGCAAAGCGC TERM 486 545026 - 544991 - G 80 -17.5 -2.82623 | overlap 544988 GGCGCGCCAGAAGCA CCGCGCCGCGCGGCA CCTTGC CGCTGCGCAGCGCGG GCAGGCGGGCAAAGC TERM 487 545799 - 545748 - G 100 -25.8 -3.37796 | gap 1, opp_overlap 545785 545797 CCGCACCACGTAGAA GCTGGCGGCCGCGGCCGGCACGCCG GCG CGGCGCAGCG-CCGCGGCCACCGGC GCGGGCACGCCGGCG RALTA_A0532 546680 - 546093 - | putative transcriptional regulator, MarR family RALTA_A0533 547828 - 546677 - | putative branched amino acid transport system permease, periplasmic binding component RALTA_A0534 549125 - 547872 - | putative Salicylate 1-monooxygenase TERM 488 549018 - 548975 - G 77 -17.4 -2.62616 | gap 1, opp_overlap 548968 548984 CCAGCTCGGACAGCA CGCGCACGGCGTGCGGCAGCA GGT TGATGCCG-ACGCCGAGCGGG CGCAGCGATTCGCTG TERM 489 549258 - 549244 - R 93 -8.5 -4.96646 | opp_overlap 549244, overlap 549223 GCAGATAAGGAAAAA CCCGC GGGGA GCGGG TTTGATAGGAAGTAC TERM 490 549400 - 549423 + r 79 -9.5 -4.14392 | opp_overlap 549400 TCAGGGTCGTGAAAA CCCCGCGCT CAGCCC AGCGCGGCG TTTTCCGGATTAGCC TERM 491 549423 - 549400 - R 76 -9.5 -4.08216 | opp_overlap 549400 TCAGGGTCGTGAAAA CCCCGCGCT CAGCCC AGCGCGGCG TTTTCCGGATTAGCC RALTA_A0535 549872 - 549408 - | conserved hypothetical protein; Transmembrane protein TERM 492 550854 - 550911 + G 73 -16.2 -2.60763 | overlap 550854 550903 550904 ATCTGCGCGCAGCCG CTGCCGAGCGCGCCG-CAGCGCGGCGGC TAGC GCTGCC-CGATGGTGGCGGGCGCGGCGG CTTGTCCGCTGTCGC RALTA_A0536 549981 - 550883 + | putative transcriptional regulator, LysR family mdtD 552412 - 550880 - | RND efflux system, outer membrane lipoprotein mdtC 555714 - 552415 - | multidrug efflux system, subunit C mdtB 558839 - 555717 - | multidrug efflux system, subunit B mdtA 560333 - 558849 - | multidrug efflux system, subunit A TERM 493 560349 - 560371 + H 74 -14.8 -2.51872 | overlap 560348 560346 560344 560351 GTCCGCAATCCTGGG GACGGCGCGC CCG GCGCACCGTC ATGTGTTCTGCTGGC TERM 494 560521 - 560540 + H 73 -11.4 -3.57144 | opp_overlap 560520 560519, overlap 560523 560524 GCGGCAAGGATAATG TGCGGGCG CGGA CGCCCGTA TTTCCGCGTCCGGCC TERM 495 560523 - 560538 + H 72 -11.8 -3.36515 | opp_overlap 560520 560519, overlap 560521 560524 GGCAAGGATAATGTG CGGGCG CGGA CGCCCG TATTTCCGCGTCCGG TERM 496 560627 - 560608 - H 82 -5.6 -4.86731 | gap 1, opp_overlap 560609 560610, overlap 560609 CCTGCGGAAACAAAA CCGTCCGGC CCC GCCGG-CGT ATGTGGCGCCGGGGC RALTA_A0541 560659 - 561402 + | putative response regulator, OmpR family RALTA_A0542 561470 - 562741 + | putative sensor histine kinase TERM 497 562837 - 562804 - T 100 -18.1 -3.5393 | overlap 562805 ACCACCCCTGGCAAA GGCTCCCCTCTCCCG CAAG CGGGCGAGGGGAGCA AACCAGCAGCGGTCG TERM 498 562836 - 562805 - T 100 -21.6 -2.72144 | overlap 562804 CCACCCCTGGCAAAG GCTCCCCTCTCCCG CAAG CGGGCGAGGGGAGC AAACCAGCAGCGGTC RALTA_A0543 563490 - 562882 - | conserved hypothetical protein, DUF205 RALTA_A0544 564105 - 563614 - | conserved hypothetical protein; putative nucleotide/oligonucleotide binding protein xerD 565063 - 564125 - | site-specific tyrosine recombinase TERM 499 564411 - 564353 - G 79 -14.5 -3.30441 | gap 2, overlap 564392 GATCAGGTGCCAGAA GGCCTGCC-GCGTCATGC-CTTCGCCGCG CTG CGTGACGAAGAGCGCGTCGCAGGCACGCC CGGCCAGCAGCACCG RALTA_A0546 565539 - 565060 - | putative METHYLATED-DNA--PROTEIN-CYSTEINE METHYLTRANSFERASE TERM 500 565614 - 565597 - R 100 -14.1 -5.24129 | GCGGGGCAGAAAAAA GGCCGCC TCGC GGCGGCC CCTTGCGGATGACGT RALTA_A0547 566611 - 565643 - | conserved hypothetical protein, UPF0065 TERM 501 566656 - 566635 - R 86 -13.7 -3.85698 | GTCTCCCGTCAGAAA TCCGGGCAG GGTG CCGCCCGGA AGCAAAAAAACCGTC TERM 502 566700 - 566667 - R 100 -5.1 -5.63103 | gap 1, opp_overlap 566690 CCGGAAGCAAAAAAA CCGTCGCAGTGCCACA GGT CG-GGCGGTGCGCCGG CAGCGTAATCTGGGG RALTA_A0548 567435 - 566716 - | hypothetical protein TERM 503 567078 - 567094 + g 78 -9.3 -4.26076 | AGGTGCCCAGTACCA GGGCCGC GTT GCGGGCC TTTTCCTCCAGGTAC TERM 504 567507 - 567522 + H 81 -2.5 -5.11033 | TCCGTATCTGCCCTA GTCTG CACATT CAGGC TTTTTTGCCGTTATC RALTA_A0550 567618 - 568511 + | putative transporter, Auxin Efflux Carrier (AEC) family RALTA_A0551 569746 - 568532 - | conserved hypothetical protein, 4Fe-4S cluster binding motif TERM 505 569640 - 569685 + g 70 -15.4 -2.71744 | gap 2, opp_overlap 569609, overlap 569667 CATGCGCGGATCGAC GCGGCCA-GCG-CCGCAAGCTC CCCC GGGCCCGCGGCCGCGTGGCCGC TGGTATCTGGTACTG RALTA_A0552 569754 - 570275 + | putative enzyme with nucleoside triP hydrolase domain, UPF0079; putative exported protein TERM 506 571448 - 571426 - g 75 -5.4 -4.56133 | overlap 571427 GGCCAACAAGGAAAA TGCCTCCGAC CTG ATCGGCGGCG CCAACATGGGCAACA amiC 570269 - 571789 + | N-acetylmuramoyl-L-alanine amidase TERM 507 571849 - 571817 - T 100 -26.5 -4.42386 | opp_overlap 571821, overlap 571821 GCGGCAGGCACAAAA GAAACGGGGCATGCC TTG GGCATGCCCCGTTTC TCATGGCCACGCGCT TERM 508 571821 - 571845 + T 100 -21.5 -3.96148 | opp_overlap 571817 571821 CAGGCACAAAAGAAA CGGGGCATGCC TTG GGCATGCCCCG TTTCTCATGGCCACG TERM 509 571845 - 571821 - T 100 -21.5 -4.7878 | opp_overlap 571821, overlap 571817 CAGGCACAAAAGAAA CGGGGCATGCC TTG GGCATGCCCCG TTTCTCATGGCCACG RALTA_A0554 572890 - 571865 - | putative Na+ dependent transporter, COG0385 TERM 510 572012 - 572045 + g 74 -13.1 -3.61398 | opp_overlap 572012 572011 572009 572014, overlap 572015 ATGGCCCGCAAACAG GATCTTGGCCATCGG GATG CCGTTGGCCAGGCTC TTCTTCGAGCCGCAG RALTA_A0555 572995 - 573912 + | putative transcriptional regulator, LysR family RALTA_A0556 574723 - 573944 - | putative SAM-dependent methyltransferase, UbiE/COQ5 family; putative exported protein TERM 511 574740 - 574770 + H 74 -10.4 -3.78934 | gap 1 GTGCTGAGCTCCTTG GGCCG-CTGCCGG GTGAGG CCGGCGGGCGGTC TTGTTGTCGGGGGAG RALTA_A0557 574883 - 575689 + | putative DNA binding protein, Helix-turn-helix motif; cro/C1-type DNA-binding domain RALTA_A0558 576466 - 575708 - | putative 3-HYDROXYACYL-COA DEHYDROGENASE TYPE II OXIDOREDUCTASE PROTEIN TERM 512 576061 - 576080 + g 70 -12.8 -3.30124 | TGATCACGCCGCGCT CGCCCTCG CTGT CGGGGGCG TTCTGCACCATCGCC TERM 513 576629 - 576614 - R 100 -11.8 -6.09888 | opp_overlap 576614 CCGGAACAAAAAAAA GCGGCC CGAA GGCCGC TTTCTTGACTGTCTG TERM 514 576614 - 576629 + r 86 -11.8 -4.24285 | opp_overlap 576614 CCGGAACAAAAAAAA GCGGCC CGAA GGCCGC TTTCTTGACTGTCTG adk 577324 - 576659 - | adenylate kinase kdsB 578527 - 577718 - | CTP:CMP-3-deoxy-D-manno-octulosonate transferase RALTA_A0561 578741 - 578538 - | conserved hypothetical protein, DUF343 lpxK 579825 - 578722 - | tetraacyldisaccharide 4' kinase (lipid A 4'kinase) TERM 515 578774 - 578802 + g 82 -15.9 -3.28001 | overlap 578750 578780 578781 CGCCCGGCGGCGCCG CTCGCGGCGGCCG GCG CGGTCGGCGCGGG TTGGATTTGCGCCTG TERM 516 579720 - 579685 - G 70 -15.4 -2.73364 | gap 1 CGTCGACTTGAACCA GCCGCGCTGGTA-GCCG TGG CGGCGCACCCGCGCGAC CACGCCGAACAGCAG exbD2 580386 - 579961 - | BIOPOLYMER TRANSPORT TRANSMEMBRANE PROTEIN exbB2 581030 - 580410 - | BIOPOLYMER TRANSPORT TRANSMEMBRANE PROTEIN TERM 517 580859 - 580892 + g 74 -11 -3.72027 | gap 2, overlap 580861 TGTTGACCACTTCCG GCG-TGGCG-CGGCGC TGCT GCGCGGCCGCCAGCGC TTCTTCATACAACCT TERM 518 581399 - 581421 + H 76 -9 -4.05033 | overlap 581401 581402 ACGTGCCGTGGCGCT GGCTGCCACA GCG TGCGGCCGCC TTTCTGTACGCTGGA TERM 519 582568 - 582513 - g 88 -11.2 -4.4078 | GCGGCTCAAGGAAAA GCTGTCGCAGG--CCGGGCTGTTCGCGC CGGA GCGCAAGC-GCCCGGTGCCGGCG-CAGC CGCGCGCCATCGGCG xseA 582115 - 583500 + | exonuclease VII, large subunit sodB 583701 - 584282 + | superoxide dismutase TERM 520 584337 - 584310 - f 70 -12.8 -2.93393 | opp_overlap 584310 584317, overlap 584317 CCGCACCGCAGAAAT CGAAAAAGGGCC GCCA GGCCCTTTTTTG TTGTCCGTCCGATTC TERM 521 584310 - 584337 + F 82 -15 -3.36803 | opp_overlap 584310 584317, overlap 584317 CCGCACCGCAGAAAT CGAAAAAGGGCC GCCA GGCCCTTTTTTG TTGTCCGTCCGATTC TERM 522 584330 - 584317 - f 100 -9.5 -4.84529 | opp_overlap 584310 584317, overlap 584310 GCAGAAATCGAAAAA GGGCC GCCA GGCCC TTTTTTGTTGTCCGT TERM 523 584317 - 584330 + F 100 -9.5 -5.56673 | opp_overlap 584317 584310, overlap 584310 GCAGAAATCGAAAAA GGGCC GCCA GGCCC TTTTTTGTTGTCCGT RALTA_A0567 584755 - 585849 + | putative Porin TERM 524 586138 - 586101 - g 70 -12.5 -3.28924 | GATCGTCGTCGACAA CCGCCCCGGCGCCGGCG GCAC CATCGGCACCGCGGTGG TGGCCAAGGCGCCCG RALTA_A0568 585895 - 586875 + | conserved hypothetical protein, UPF0065 RALTA_A0569 586936 - 588672 + | putative Metallo-dependent hydrolase; putative exported protein RALTA_A0570 588675 - 589067 + | 5-CARBOXYMETHYL-2-HYDROXYMUCONATE DELTA-ISOMERASE PROTEIN TERM 525 589717 - 589692 - g 70 -12.5 -3.28712 | TTGCGCGGGCGAGAA CCCGGCCAGCA AGTC TGCCTGCCGGG AATGGTCGGCGCTGA TERM 526 589933 - 589912 - g 73 -12.9 -3.44146 | opp_overlap 589909 CGCCGCGACAACGAA GGCAGCGCG ACGC CGCGCAGCC AGCTCTGGTACGGCG RALTA_A0571 589123 - 590214 + | putative PORIN RALTA_A0572 591213 - 590269 - | putative Transcriptional regulator, LysR family TERM 527 590446 - 590466 + g 74 -11.1 -3.68302 | CCGGATCGGCACTGC CTGCAGCCG CTG CGCCTGCAG TTCTTCGCGTATTGC TERM 528 591284 - 591271 - R 100 -3.7 -5.4477 | overlap 591272 591273 AAATTTCCAAAAAAA GCGCC CTCG GGCGA CGAATGCCGTTCAGT TERM 529 591379 - 591350 - R 85 -5.8 -5.03314 | gap 2, opp_overlap 591350 591352 591376, overlap 591351 591352 GTGACTTCCAAAAAA CGCCGGATTCCCGC CTGC GCGGGAAT--GACG GTAGTGTCTGATTCC RALTA_A0573 592441 - 591428 - | putative transcriptional regulator, LacI family TERM 530 593107 - 593135 + G 70 -14.6 -2.70932 | gap 2 GCTGCTGGCGGTGGC CGCGGCCAGGCTGC TGG GC-GCC-GGCCGCG TCATTGCCGCCGGGC RALTA_A0574 592610 - 593596 + | putative Zinc-containing alcohol dehydrogenase RALTA_A0576 594168 - 593785 - | conserved hypothetical protein; putative exported protein TERM 531 594264 - 594302 + H 74 -9.5 -3.85698 | gap 1, opp_overlap 594289, overlap 594265 GGGCCATCCCGCACG CTGCAGTGC-CCGGTCCG GCAA CGGACCGGCGCAACGCAC TTTCTACAAGCGCCG TERM 532 594265 - 594301 + H 70 -13 -2.91276 | gap 1, opp_overlap 594289, overlap 594264 GGCCATCCCGCACGC TGCAGTGC-CCGGTCCG GCAA CGGACCGGCGCAACGCA CTTTCTACAAGCGCC TERM 533 594568 - 594543 - g 72 -4.6 -4.45664 | gap 1, overlap 594555 594558 TGAACTGAAGGAAAA CGC-CGCGGAC AACCA GCGCGCGCGCG AACGCGCCAGGGCCG RALTA_A0577 594460 - 594741 + | hypothetical protein RALTA_A0578 595356 - 594748 - | putative Uracil-DNA glycosylase TERM 534 597840 - 597787 - g 77 -15.2 -3.19175 | gap 3, overlap 597782 GTGCAAGAGAGCGAA CCGCGCC-CCGCGC-CGGCCGCGCCGC ACA GCGCCGAAGCCGTGC-CGGAGGCGCCG GATGCGCAGGCGCTC RALTA_A0579 595576 - 598278 + | putative peptide-transporting ATPase ABC transporter, membrane component, C_term Response regulator receiver domain RALTA_A0580 599202 - 598300 - | putative Glycosyl transferase, family 2 TERM 535 599094 - 599122 + g 70 -12.3 -3.35679 | GCGCGCTCAGTCGCG CCAGCGCGGTGCG CAC CGAATCGCGCCGG TTATGCGTCAGCACC RALTA_A0581 599983 - 599219 - | hypothetical protein RALTA_A0582 601041 - 600013 - | putative NAD-dependent epimerase/dehydratase; putative dTDP-glucose 4,6-dehydratase; Putative UDP-glucuronate decarboxylase 3 RALTA_A0583 602365 - 601094 - | putative Glycosyl transferase, group 1 TERM 536 602534 - 602508 - H 79 -15.2 -2.96711 | overlap 602500 TGGAGAAGCGATATA GCGGTTCTCGTT GAG AGCGAGAACCGC ATAGCCCAGAAGACG TERM 537 602559 - 602570 + H 81 -7.2 -4.39133 | opp_overlap 602549 602546, overlap 602538 AAGACGCACCAAGGG CGCC ATCG GGCG TTTTGGTCATTCTTA RALTA_A0584 602753 - 603265 + | hypothetical protein TERM 538 603680 - 603633 - g 76 -14.2 -3.43492 | gap 2 CGATATCGACGACAA GCTTGCGCGCGACAGCGCCGGC GGCCTT GCCGAGGCCG--GCGCGCAAGC GTGGCCGCTGCATCT RALTA_A0585 603466 - 604236 + | putative Short-chain dehydrogenase/reductase gmhB1 604233 - 604886 + | D,D-heptose 1,7-bisphosphate phosphatase (D-glycero-D-manno-heptose 1,7-bisphosphate phosphatase) TERM 539 605511 - 605542 + G 85 -15.9 -3.54424 | gap 2 TGCATCCCGGCGCCA GCGCGCCGTCGCGGC GCTG GCCGC--CGGCGCGC TTTGCCCAGGTGGCG RALTA_A0587 604883 - 606124 + | putative Lipopolysaccharide heptosyltransferase, Glycosyl transferase, family 9 TERM 540 606886 - 606940 + G 74 -11.9 -3.70902 | gap 1 TGTCGCAACCGGACC TG-GCGGCGTTGCTGGGGCCGCCGCG CCAG CGCGGCGAGGCCTTCGGCGCCGCGCA TTTCGATATCGCGCG RALTA_A0588 606105 - 607862 + | Carbamoyltransferase TERM 541 608260 - 608298 + G 70 -8.6 -3.85817 | overlap 608261 CCGGCACGGCCCACC GACCACGAGCGCGATACC GGG GGTCTCGCGCACGCGGAG TTTGTCACCGCCAAT TERM 542 608324 - 608352 + G 71 -11 -3.53761 | gap 1, overlap 608323 CCAATTGCTTCGTCC GGCG-CGATGCGC TGCA GCGCATCGGCGGC TTTGACGAGCGCTTC RALTA_A0589 607849 - 608835 + | putative Glycosyl transferase, family 2 RALTA_A0590 608832 - 609959 + | putative heptosyltransferase, Glycosyl transferase, family 9 RALTA_A0591 609952 - 610899 + | putative Glycosyl transferase, group 1 RALTA_A0592 611347 - 610916 - | hypothetical protein TERM 543 611360 - 611391 + r 70 -7.8 -3.9941 | overlap 611361 CATGGCAGCCGGCCA GGCGCCGCCGAAGC GCGC GTTGCGGCGGCGGG TTTCATTCTGCCGCC RALTA_A0593 612041 - 611394 - | putative transposon resolvase TERM 544 612228 - 612188 - H 73 -8.8 -4.07568 | gap 1, opp_overlap 612192 TGCCGGCGCGGAAAA CCGATGCGGGCGCGCATGC GTTG GCCCACGCGCC-GCCGCGG GCACAATTACAAGGC RALTA_A0594 612375 - 612842 + | conserved hypothetical protein, Hemerythrin HHE cation binding region RALTA_A0595 612980 - 613309 + | putative FERREDOXIN fdsR 614406 - 613306 - | transcriptional regulator of formate dehydrogenase operon, LysR TERM 545 614046 - 614059 + g 72 -3.8 -4.62783 | GCGCCGTCGCCTCCG GCTG CGCCAT CAGC TTTTTCAGCTCGATC fdsG 614568 - 615113 + | NAD-dependent formate dehydrogenase gamma subunit fdsB 615110 - 616672 + | NAD-dependent formate dehydrogenase beta subunit TERM 546 619216 - 619188 - g 82 -14.5 -3.40403 | overlap 619189 CCTGTCCCAGTACAA CGTCGGCGCGCAG ACG CGGCGCACCGACA ACGTCCACTGGCATG TERM 547 619215 - 619189 - g 73 -15.8 -2.64099 | overlap 619188 CTGTCCCAGTACAAC GTCGGCGCGCAG ACG CGGCGCACCGAC AACGTCCACTGGCAT fdsA 616708 - 619587 + | NAD-dependent formate dehydrogenase alpha subunit fdsC 619603 - 620478 + | formate dehydrogenase formation protein fdsD 620475 - 620699 + | NAD-dependent formate dehydrogenase delta subunit sciA 621777 - 620716 - | replication/virulence associated protein; ImpA-related N-terminal domain TERM 548 621026 - 620979 - G 72 -15.5 -2.89742 | GGCAATCGGCAGACA CGCAGGCTCGTGCC-GCCGCTGC TGCC GCAGCGGCAGGCG-GTGCCGGCG CGGTCGCGACCGAGG sciB 622814 - 621774 - | replication/virulence associated protein; DUF1305 sciC 624697 - 622817 - | replication/virulence associated protein; DUF879 sciD 625223 - 624702 - | replication/virulence associated protein; DUF1316 sciF 625953 - 625216 - | replication/virulence associated protein TERM 549 626653 - 626675 + G 75 -4.7 -4.62069 | overlap 626622 TCGGCGATCGAGCGG GCCTGGGTC TATGC GACGCTGGC TTTTTCCGATGACCG TERM 550 627556 - 627588 + G 73 -9.8 -3.89346 | gap 1 CTGATCCGCGACGAG GCGGTGCGCGCCGCC GTCA GGCTGT-CGCATCGC TTTATCCCGTCGCGG sciG 626362 - 629100 + | replication/virulence associated protein; putative ATP-dependent protease, clpA/B chaperone motif sciH 629117 - 629650 + | replication/virulence associated protein; DUF770 sciI 629700 - 631193 + | replication/virulence associated protein; DUF877 sciK 631322 - 631807 + | Hcp-related (Hemolysin-coregulated protein) protein; replication/virulence associated protein; DUF796 TERM 551 632927 - 632874 - g 71 -10.2 -3.67775 | gap 3, overlap 632871 632849 ATTCGCATGGAAGAA CGCCGCTCACGCGGCCG-GCGCGCACG TGG CGTGGGTGCGCTGC-GCG-GAGTGGCG GCGGGCTGCACCTAC vrgS 631938 - 634544 + | replication/virulence associated protein; Vgr-related TERM 552 636011 - 635997 - g 83 -5.6 -4.83169 | opp_overlap 636002, overlap 635999 AGCTTCGGAGAAAAA CTCGGT GCG ACCGTG CTCGGTGGCATTTAT RALTA_A0612 634578 - 636917 + | conserved hypothetical protein; putative Type V secretory pathway, adhesin AidA; putative Ribonucleases G and E RALTA_A0613 636914 - 638107 + | putative exported protein of unknown function RALTA_A0614 638124 - 638480 + | hypothetical protein RALTA_A0615 638484 - 640043 + | putative exported protein of unknown function RALTA_A0616 640111 - 640530 + | hypothetical protein RALTA_A0617 640601 - 640861 + | conserved hypothetical protein, PAAR motif sciN 640858 - 641397 + | replication/virulence associated protein; putative exported protein TERM 553 642259 - 642294 + G 90 -17.6 -3.40597 | overlap 642257 CCAGACCCGTCGGCC TGCGGGGCATGCTGCC TATC GGCACGATGCCCCGCA TCTTTGCCTCAAGCC sciO 641402 - 642745 + | replication/virulence associated protein sciP 642742 - 644019 + | replication/virulence associated protein; putative outer membrane protein, OmpA family membrane protein TERM 554 645115 - 645133 + G 70 -13.1 -3.27298 | GCCATGGCGAGGCGG CGGCCGG GACAG CCGGCCG TTGATCCTTGGGCGC sciS 644032 - 647856 + | replication related protein sciT 647835 - 648521 + | replication/virulence associated protein RALTA_A0623 649264 - 648569 - | putative transglycosylase RALTA_A0624 650825 - 649308 - | putative Sodium:sulfate symporter TERM 555 650850 - 650891 + H 73 -10.8 -3.54721 | gap 2 CCTTGTAGTGGATGT GCCCGAAGCGGCCTTGCTGC TGGC GCGGC--GGCCGCGTCGGAC TTATCTGAAATTTTC RALTA_A0626 651134 - 651379 + | hypothetical protein RALTA_A0627 651417 - 652241 + | conserved hypothetical protein; putative exported protein; putative Protein tyrosine/serine phosphatase modE 652256 - 653140 + | transcriptional repressor for molybdate uptake TERM 556 653642 - 653660 + G 89 -3 -5.28942 | overlap 653633 653630 653645 ATTTGCCGCGGGCGC CATGACCG CGT CGTTCCTG TTTTTCTTTGCGCTG RALTA_A0629 653193 - 653792 + | putative L-lysine exporter TERM 557 653882 - 653831 - g 70 -12.2 -3.26947 | gap 2, opp_overlap 653834 GAACGTCGAGATCAA GGCCCGCATCGACAGCGTCGAGGC GCTATT GCCGCG-CGCCGCCG-CGCTGGCC GACCACGGGCCCGAA RALTA_A0630 653808 - 654347 + | putative adenylate cyclase; CYTH family modC 655039 - 654317 - | molybdate transport protein; ABC transporter, ATP binding component modB 655772 - 655062 - | molybdate transport protein; ABC transporter, membrane component TERM 558 655357 - 655317 - G 82 -14.7 -3.53224 | gap 1 CAGCGCGCGCGCAAA CGCCAGCAGCACGCCGGC GATGAT GCC-GCGCGCCGCCAGCG GCAGCGTGACGCGGA modA 656559 - 655792 - | molybdate transport protein; ABC transporter, periplasmic binding component RALTA_A0634 656977 - 656783 - | hypothetical protein RALTA_A0635 657990 - 657049 - | Glyoxylate reductase / 2-ketogluconate reductase (Glycolate reductase) RALTA_A0636 658021 - 658671 + | putative Nucleoside 2-deoxyribosyltransferase RALTA_A0637 659288 - 658668 - | putative lipoprotein TERM 559 659142 - 659197 + g 81 -18.8 -2.78463 | CCACAGGGTGTCGGT CGACGGCGCGGCTGCCGGCGCCGG CGCGGCAA CCGGCGCCGGCCCTTGCGCCAGCG TGTAGTAGCGCGGCT pqiB 660961 - 659285 - | paraquat-inducible protein B pqiA2 661685 - 660948 - | Paraquat-inducible protein A pqiA1 662380 - 661682 - | Paraquat-inducible protein A RALTA_A0641 663564 - 662380 - | conserved hypothetical protein, DUF20; putative membrane protein TERM 560 663109 - 663052 - G 72 -9.2 -4.02817 | gap 3, overlap 663053 GGTGTAGAAGAAGAA CGCCAGGATGATCGA-CAGCGCCAG-CTG CCC CAGACCGGCGCCGATCGACAGTCCCG-CG CCCAGCAGCACGTGC TERM 561 663766 - 663794 + r 77 -13.8 -3.30474 | opp_overlap 663755 663761 663764 AGGAGGCAAAGAGCG CGTCGCCTGGGC GGCTG GCCAAGGCGGCG TTGGTGGTTCTGGCG RALTA_A0643 665276 - 664140 - | conserved hypothetical protein, CBS (cystathionine-beta-synthase) domain; putative TRANSMEMBRANE PROTEIN RALTA_A0644 665853 - 665434 - | putative transcriptional regulator, AsnC/Lrp family TERM 562 665898 - 665881 - H 79 -9.1 -4.11216 | opp_overlap 665880 665881, overlap 665882 GGGCGATTGGCAAAA CGCCAGC ATAG GCTGGCA CTTTGCCTAATGGTA TERM 563 666357 - 666325 - g 72 -13.4 -3.14132 | opp_overlap 666315 CGCCGCGGCGAGGAA GCGCCGTTTGCCGA CATCT TCGGCAAGCTGCGC GAGCGGGGGCTGCTC RALTA_A0645 666028 - 666906 + | putative Amidinotransferase TERM 564 667029 - 667074 + G 74 -12.6 -3.54424 | gap 1 CGCAGGCCGCCATCG TCGACCTGGCCGCGCAGGTGC GCCAG GCATTTGCGCG-CTGGGCCGA TTTCGACAAGTCCGC RALTA_A0646 666920 - 668029 + | Ornithine cyclodeaminase (OCD) RALTA_A0647 668630 - 668034 - | conserved hypothetical protein, DNA_binding motif TERM 565 668672 - 668700 + r 79 -11.5 -3.91897 | CGCGCCGTCATGGCG CACGCGGCCCCTG GCA CTGGCGCCGCGCG TTTGTCACTGCCAAC TERM 566 668732 - 668764 + r 83 -4.7 -5.05301 | gap 1, overlap 668734 GTTGACTGACCCTGT GT-GCCCGGCCCGC TCCCCC GCTGGCCAGGCTGC TTTTTGTGGTTGTTT dctD2 670414 - 669095 - | C4-DICARBOXYLATE TRANSPORT RESPONSE REGULATOR TRANSCRIPTION REGULATOR PROTEIN TERM 567 669981 - 669991 + g 71 -2.4 -4.56597 | overlap 669930 GAGTGGCCGATCAGC CGGG TTT CCAG TTTTTCGCGCCCGGC dctB2 672359 - 670404 - | C4-DICARBOXYLATE TRANSPORT SENSOR KINASE TRANSCRIPTION REGULATOR PROTEIN TERM 568 671525 - 671559 + g 74 -12.6 -3.66288 | TGTCGAGCTTGCGCA CCGGGGCCAGCGGCAG TTG CGGCAGCGGGGCCCGG TTGTATTGCAGGCTG TERM 569 672502 - 672474 - R 100 -21.8 -4.78149 | opp_overlap 672485 672501 GCCAGAATGCAAAAA GGCCCGGTTGCC TGTTC GGCAACCGGGCC CTGGCGCGCCTGGCG dctA2 673835 - 672525 - | citrate and C4-dicarboxylic acids transport protein (DAACS family) TERM 570 674211 - 674234 + r 95 -18.2 -3.42503 | ATCTGCTGGCGAAGG CGCCGTTCGG GAAT CCGAACGGCG TTCTAGGTGTTAACC hutG2 675371 - 674388 - | Formimidoylglutamase RALTA_A0653 676687 - 675368 - | putative histidine permease hutU2 678567 - 676882 - | UROCANATE HYDRATASE (UROCANASE) hutC2 679463 - 678741 - | transcriptional regulator, gntR family; putative HISTIDINE UTILIZATION REPRESSOR TRANSCRIPTION REGULATOR PROTEIN RALTA_A0656 682924 - 679541 - | putative diguanylate cyclase with Mase1 and PAS domains TERM 571 680792 - 680750 - G 73 -9.6 -3.87815 | opp_overlap 680755, overlap 680753 680755 GTCCAGGTCGATAAA GCACAGCGCCGCGCGGTGGC CGT GCAAGCGCGCCGCGTCGCAC GACTCGCGCAGGCGC TERM 572 681748 - 681698 - G 75 -9 -4.1552 | gap 2, overlap 681699 TACCTGCGTAATAAA GTGCT-GCGG-CTCGCCGGTCTGC TCGTC GCGCACCAGCGAGACCGCCAGCAG CACCCACCGATAGTG TERM 573 683505 - 683525 + G 72 -6.7 -4.2558 | GTCAGCCCGGTCGAT GCGCACGGG GAA CACCTGCGC TTTTCCTGGGAACTG RALTA_A0657 683259 - 683657 + | hypothetical protein RALTA_A0658 683756 - 684643 + | putative di-heme cytochrome C-signal peptide RALTA_A0659 685734 - 684640 - | putative acyltransferase RALTA_A0660 686049 - 686513 + | putative isoquinoline 1-oxidoreductase (alpha subunit) oxidoreductase protein (iorA2); 2Fe-2S ferredoxin domain TERM 574 686721 - 686740 + G 90 -10.6 -4.77036 | opp_overlap 686702 CCAGGCCCAAGCCGC CGCCGGCG GCGC CGCAGGCG TTTTTGATCATCGCG TERM 575 688750 - 688774 + G 75 -9.9 -3.9712 | GTTGTTCACGCTGAC CGGCAAGCGCC AGC GGCAATTGCCG TTTGTGATGGCCTGA RALTA_A0661 686531 - 688789 + | putative Isoquinoline 1-oxidoreductase subunit beta (large chain) (iorB) TERM 576 688960 - 688939 - f 93 -9.4 -4.6902 | gap 1, overlap 688941 GTAGAACGGGAAAAA CCGCGC-GC GCCCG GCTGCGCGG CAAGAGTGACCCCCG RALTA_A0662 689039 - 689326 + | conserved hypothetical protein; putative transcriptional regulator TERM 577 689356 - 689339 - T 76 -14.1 -3.14564 | opp_overlap 689339 TGAGTGCCGCACGAA CGGGCCC CGCG GGGCCCG TTTGCATTGGCGCGG TERM 578 689339 - 689356 + T 84 -14.1 -3.75153 | opp_overlap 689339 TGAGTGCCGCACGAA CGGGCCC CGCG GGGCCCG TTTGCATTGGCGCGG RALTA_A0663 689837 - 689409 - | putative lipoprotein TERM 579 690288 - 690343 + G 81 -12.5 -3.86202 | gap 3, opp_overlap 690255, overlap 690289 690327 CACTGATGTTCATGT TGCTGGC-GGGCCTTGCGGCCGCGCCGG GGC CCG-CGCTGGCGC-AGGCCGAGCCGGCG TTTCGTGTGGTCGGC RALTA_A0665 690278 - 691216 + | conserved hypothetical protein; putative exported protein RALTA_A0666 691933 - 691247 - | putative transcriptional regulator, TetR/acrR family TERM 580 692069 - 692081 + r 72 -7.7 -4.21343 | CTGTTTTATTTAGTA CCGTA CGG TACGG TTTGTATATATTCAG RALTA_A0667 692368 - 692093 - | hypothetical protein RALTA_A0668 692561 - 693358 + | Citrate synthase RALTA_A0669 693355 - 695001 + | AMP-dependent synthetase and ligase RALTA_A0670 695022 - 695861 + | putative Intradiol ring-cleavage dioxygenase RALTA_A0671 696741 - 695887 - | putative transcriptional regulator, IclR family TERM 581 697946 - 697990 + G 77 -11.4 -3.85698 | gap 1, overlap 697948 GTGGTGCCGGGCTCG GGCCTGGTCAAGTCCC-AGGC CGAG GCCGAGGGCCTTGACCAGGTA TTTATCGCGGCCGGC TERM 582 697948 - 697988 + G 84 -16.2 -3.51934 | gap 1, overlap 697946 GGTGCCGGGCTCGGG CCTGGTCAAGTCCC-AGGC CGAG GCCGAGGGCCTTGACCAGG TATTTATCGCGGCCG TERM 583 698154 - 698181 + G 71 -9.8 -3.78022 | gap 1, opp_overlap 698112, overlap 698173 TGGTGAGCCCGCAGA TG-GCCGCCGCGG CCG CCGTGGCGGGGCA TTTCGTCGATGTCCG leuC2 696791 - 698206 + | 3-isopropylmalate isomerase subunit, dehydratase component leuD2 698226 - 698864 + | 3-isopropylmalate isomerase, subunit with LeuC RALTA_A0674 698916 - 699911 + | conserved hypothetical protein, UPF0065 TERM 584 700353 - 700365 + G 72 -9.1 -4.03234 | overlap 700304 GCTGGCCGCGAGCGC GCAGC TGA GCTGC TTTGTGTCCGGGCCA RALTA_A0675 699928 - 700851 + | putative beta-hydroxyacid dehydrogenase RALTA_A0676 700922 - 702082 + | putative branched amino acid transport system permease, periplasmic binding component RALTA_A0677 702122 - 703009 + | putative branched-chain amino acid transport system permease, membrane component TERM 585 703284 - 703341 + G 78 -12.6 -3.72324 | gap 2 TGCCGCGGCGGGCCT GCTGGCCA-GCGCGGCGCTGGC-CGCGG CGAT CGGCCTGCCGGTGCTGCGCCTGGGCGGC TTCTTCCTGGCGCTG RALTA_A0678 703012 - 704001 + | putative branched-chain amino acid transport system permease, membrane component RALTA_A0679 703998 - 704804 + | putative branched-chain amino acid transport system permease, ATP_binding component RALTA_A0680 704816 - 705526 + | putative branched-chain amino acid transport system permease, ATP_binding component TERM 586 705887 - 705863 - g 74 -14.3 -3.30124 | opp_overlap 705831 GCGCACGCTCGACAA CCGCTTCCTCA GCG TGTGGAAGCGG CAGGAGGGCGCGTGG RALTA_A0681 705570 - 705974 + | hypothetical protein RALTA_A0683 705986 - 706291 + | conserved hypothetical protein, YciI-related TERM 587 706855 - 706830 - g 70 -14.7 -2.73542 | GGGAACGTTCAATGA GGTGACACGCG AATC CGCGTGGCACC GCATGGCCGAGGCCG RALTA_A0684 706396 - 707022 + | putative Isochorismatase hydrolase TERM 588 707069 - 707028 - f 70 -12.9 -2.90309 | gap 1, overlap 707025 707023 CGGCAAATAACATCA CCCCGGCCACGCGCGAAGCC CCT GGCGCCGCGC-TGGCCAATG GCAGGCAATAAGGCC groS 707390 - 707680 + | chaperone Hsp10 (GroES), part of GroE chaperone system TERM 589 708733 - 708714 - g 75 -6.4 -4.41895 | AATCGGCAAGGAAAA CACCATCA TCAT CGATGGCG CCGGCGACGCTGCTG groL 707728 - 709371 + | chaperone Hsp60 (GroEL), part of GroE chaperone system TERM 590 709442 - 709417 - T 100 -21.9 -5.24129 | opp_overlap 709417 GGCTGCGATAAAAAA CCCCCGCGGAC GCGA GTCCGCGGGGG TTTTTGTTTGGATGG TERM 591 709417 - 709442 + T 100 -21.9 -5.30616 | opp_overlap 709417 GGCTGCGATAAAAAA CCCCCGCGGAC GCGA GTCCGCGGGGG TTTTTGTTTGGATGG RALTA_A0687 710261 - 709488 - | putative Metallophosphoesterase TERM 592 710402 - 710381 - R 100 -15.9 -5.37593 | TCGCAAAGCAAAAAA GCCCGGAAC CTGG GTTCCGGGC AAGTGACTGTCTTGC tadC 711444 - 710470 - | Tad secretion system, secretion accessory protein tadB 712497 - 711520 - | Tad secretion system, secretion accessory protein cpaF 713913 - 712543 - | Tad secretion sytem protein, secretion ATPase tadZ 715165 - 713972 - | Flp pilus assembly protein, ATPase RALTA_A0692 715647 - 715189 - | putative pseudopilin RALTA_A0693 716153 - 715644 - | putative pseudopilin TERM 593 716004 - 715989 - G 81 -3.9 -4.84359 | opp_overlap 716002, overlap 715990 715991 GTACTGCGACAAAAA GCGCG CCGCGT CACGC GTGGCCTTGGCCAGG RALTA_A0694 717419 - 716163 - | putative flp pilus assembly protein RALTA_A0695 717781 - 717443 - | putative transmembrane lipoprotein cpaC 719681 - 717816 - | pilus assembly secretion protein TERM 594 717847 - 717893 + g 74 -15.2 -3.05463 | gap 3, overlap 717832 717851 GCGGTGCGGCCGGTG GTGCCCGCCGCCGCGGTCCTGGC TTGC GCCAG--CCG-GGCGGCGGTCGC TTCGATGCGGGCAAT rcpC 720586 - 719747 - | PILUS ASSEMBLY TRANSMEMBRANE PROTEIN RALTA_A0698 722043 - 720631 - | putative ATPase, possible chaperone activity fppA 722652 - 722119 - | PREPILIN PEPTIDASE TRANSMEMBRANE PROTEIN flp-2 722877 - 722704 - | Flp pilin component flp-1 723149 - 722964 - | Flp pilin component TERM 595 723230 - 723216 - H 73 -11.4 -3.59979 | CCGCTGTATGGGAAA GCTGGC ATG GCCAGC TCAAAACCGGCGGGC TERM 596 724607 - 724625 + G 76 -7.4 -4.38712 | overlap 724595 724610 TGACCTGGCGGCCGG CGATGGCA AGC TGCCATGG TTTTATCCGCCTACA TERM 597 725026 - 725041 + G 70 -3.2 -4.43189 | overlap 725028 TCCTGTCGCTGGTGT GCTTCG GGGT CGAACC TTTTCTCGCATTCCT RALTA_A0705 724305 - 725543 + | hypothetical protein yfdH 725654 - 726676 + | prophage-derived bactoprenol glucosyl transferase RALTA_A0707 727096 - 726707 - | putative membrane component, GtrA-like protein RALTA_A0708 727827 - 727093 - | putative S-adenosyl-L-methionine-dependent methyltransferase RALTA_A0709 729236 - 727860 - | putative SIGMA-54 INTERACTING TRANSCRIPTIONal REGULATOR TERM 598 729263 - 729299 + r 100 -23.7 -3.12847 | GGATTCTTGTTTTTG CGGAACTGGCGGCCGGC ATG GCCGGCCGCTGGTCCCG TTGGCTCTAAGGCTT TERM 599 730137 - 730157 + r 73 -11.1 -3.54662 | overlap 730127 GCCTTCGGACGAATC GTGGCTGGG CAG CTCAGCCGC TTCTCATCTGTTTGG RALTA_A0711 731348 - 730371 - | Regulatory protein, LysR:LysR, substrate-binding RALTA_A0712 731600 - 732559 + | hypothetical protein TERM 600 732623 - 732611 - f 70 -7.7 -4.06611 | CAACGATAACAATAA CCTTC GGG GAAGG GTCATGGAACCAGGC RALTA_A0713 732627 - 734927 + | putative Spermidine synthase (Putrescine aminopropyltransferase) RALTA_A0714 735101 - 736360 + | putative transporter, Major facilitator superfamily MFS_1 RALTA_A0715 737103 - 736432 - | Putative protein-S-isoprenylcysteine methyltransferase; putative membrane protein TERM 601 736842 - 736863 + g 81 -2.9 -5.00884 | gap 1, opp_overlap 736839 736842, overlap 736844 736846 CTAGCGAGCAGAGGA CGGTGACCGG ATG CCAGTC-TCG TTTTTTGGGAACCCT RALTA_A0717 737835 - 737308 - | conserved hypothetical protein, DUF477 RALTA_A0718 738701 - 737832 - | conserved hypothetical protein, DUF477, COG1512; putative GLYCINE RICH TRANSMEMBRANE PROTEIN RALTA_A0719 739332 - 738706 - | putative extracellular antigen protein, similar to Lysteria LemA hemL 740726 - 739434 - | glutamate-1-semialdehyde aminotransferase (aminomutase), PLP-dependent TERM 602 740817 - 740802 - H 76 -6.1 -4.59109 | GACATGCGGCAAAAA CAGCG GAAGTT CGCTG CAATTGCCTGCCAAT rubA 740968 - 741138 + | RUBREDOXIN TERM 603 741523 - 741503 - g 89 -7.5 -4.87592 | opp_overlap 741518, overlap 741517 TCATATAGAAGAAAA CCAGCGG GTCAATA CCGCCGG CGCACAGGGTGTGGC RALTA_A0722 741477 - 741992 + | putative response regulator receiver, CheY family pilH 742031 - 742402 + | TWITCHING MOTILITY TWO-COMPONENT RESPONSE REGULATOR receiver, CheY family pilI 742455 - 743018 + | TWITCHING MOTILITY PROTEIN, CheW domain TERM 604 743604 - 743573 - g 78 -9.2 -4.28548 | overlap 743559 AGGCAGCGACGAAAA GCGCGTGCGCGCCA CCAC CGGCGCGGCCGAGC CGCTGCTGCAGGCTG TERM 605 743670 - 743650 - g 72 -6.1 -4.37092 | gap 1, overlap 743652 AGCGTTCCGAGAAAA GCGCC-GC CGACGT GCTGGCGC AGCAGCCGGTGCTGA pilJ 743124 - 745337 + | TWITCHING MOTILITY TRANSMEMBRANE PROTEIN, Methyl-accepting chemotaxis protein TERM 606 746642 - 746696 + G 82 -17.7 -3.05384 | gap 1 CCGCGTGGGAGATCG CGCTGGCGGCGCTGGCCGAGGCCGCG CAGC CGCTGGCGCAGCCGGCGCTGC-AGCG TTGCCTGGCGCAGGC TERM 607 746731 - 746769 + G 88 -15.1 -3.7732 | ATGCCGGGACGCGAG CGCGGCGCCGGCGATGC GCTGG GCCCCGCCGGCATCGCG TTGTTCCTGTCGCGC TERM 608 749750 - 749721 - g 73 -12.7 -3.4072 | CACCGTCGAGCAGAA CCTGCAGCGCGGC TTCG ACCGCGCGGCCGG CGACCTGGCCGCGCA cheW1 745414 - 751353 + | Response regulator receiver of TWO COMPONENT REGULATORY system (SENSOR HISTIDINE KINASE AND RESPONSE REGULATOR HYBRID) TRANSCRIPTION REGULATOR PROTEIN RALTA_A0727 752267 - 751431 - | conserved hypothetical protein; putative exported protein; putative fusion protein TERM 609 752337 - 752297 - R 72 -13.4 -2.71681 | gap 2, opp_overlap 752297 752302, overlap 752301 CAAGCTTGGGAATCA GATAC-CCCGGAG-GACCCC GTC GGGATCACTCCGGGTGTCTC TTTTCCATGCTAGGG TERM 610 752297 - 752337 + r 84 -11.2 -4.21194 | gap 2, opp_overlap 752297 752301, overlap 752302 CAAGCTTGGGAATCA GATAC-CCCGGAG-GACCCC GTC GGGATCACTCCGGGTGTCTC TTTTCCATGCTAGGG TERM 611 752332 - 752301 - R 71 -13 -3.00298 | gap 1, opp_overlap 752297 752302, overlap 752297 CTTGGGAATCAGATA CCCCGGAG-GACCCC GTC GGGATCACTCCGGGT GTCTCTTTTCCATGC TERM 612 752302 - 752331 + r 82 -14.3 -3.2785 | gap 1, opp_overlap 752301 752297, overlap 752297 TTGGGAATCAGATAC CCCGGAG-GACCCC GTC GGGATCACTCCGGG TGTCTCTTTTCCATG RALTA_A0728 753747 - 752440 - | putative transporter, Major facilitator superfamily MFS RALTA_A0729 754591 - 753833 - | putative deshydrogenase oxydoreductase RALTA_A0730 754879 - 754637 - | hypothetical protein aldH 756308 - 754872 - | aldehyde dehydrogenase TERM 613 755452 - 755404 - G 85 -17.3 -3.19026 | GATTCGAACACCGAA GCCAGCCGGTCGAGCAGCAGGTC GTA GACCGGGCGCTCCACCAGCAGGC GGCTGCCGGCCGAGC ppa 756539 - 757066 + | inorganic pyrophosphatase TERM 614 757098 - 757113 + F 100 -11.8 -5.4505 | opp_overlap 757064 ACCGATCTGCAGCAG CCCCGC TTAG GCGGGG TTTTTTATTGCCGCG RALTA_A0733 757201 - 757773 + | putative Cytochrome B561 RALTA_A0734 759027 - 757786 - | conserved hypothetical protein, DUF482 TERM 615 758769 - 758721 - G 80 -17.4 -2.87132 | gap 2 GCGCCTTGGCATAGA GCGGCAT-GGCGGC-GGCCAGCCG CTC CGGGCGGCCCGCCGCCGACGGCGC CCATAACGTCAGGTA TERM 616 759081 - 759069 - H 70 -10.5 -3.60627 | CGAGTCTACCGGAAA CCCCG CGC CGGGG TGGCACGCGGCAGGC nadE 759154 - 761280 + | Glutamine-dependent NAD(+) synthetase (NAD(+) synthase [glutamine-hydrolyzing]) glnK/B 761527 - 761865 + | regulatory protein (P-II) for nitrogen assimilation by glutamine synthetase (ATase) TERM 617 761888 - 761907 + T 100 -12.8 -4.45945 | GCCAGCTCAGCGAGA CGCCGCCT TGCA GGGCGGCG TTTTCATTGGTGCGT RALTA_A0737 762581 - 761940 - | conserved hypothetical protein, UPF0126; putative TRANSMEMBRANE PROTEIN RALTA_A0738 763268 - 762594 - | conserved hypothetical protein, smr domain TERM 618 763341 - 763376 + r 72 -11.6 -3.3482 | overlap 763342 GCCCGTGCCCGGGTG ACGCGCCGGCGGCGGC AATG GCCGCCGGCGGGGGGC TTACTTCAGGGCTTC TERM 619 763342 - 763375 + r 77 -15.1 -2.60571 | overlap 763341 CCCGTGCCCGGGTGA CGCGCCGGCGGCGGC AATG GCCGCCGGCGGGGGG CTTACTTCAGGGCTT trxB 764342 - 763377 - | thioredoxin reductase, FAD/NAD(P)-binding TERM 620 764356 - 764383 + H 70 -12 -3.14132 | gap 1 ATGATGCGTTCCTGT GGCCGGTGCGGCA TGG TGCC-CACCGGCA TTGCTCGAAAGCGAC TERM 621 766359 - 766312 - g 87 -17.6 -3.30124 | gap 1, overlap 766288 CCGCATCGCGCAGAA GGCGCGCGCCGC-CGGCCTGCAC CTG GTGCTGGCCACGCAGCGCCCGTC GGTGGACGTGATCAC TERM 622 766501 - 766540 + G 72 -8.5 -4.03234 | gap 2 CGACATGCTTTACCT GGCGCCAGGCAC-CG-GCC TGCC GGTGCGCGTGCACGGCGCC TTTGTCTCGGACGAC ftsK2 764576 - 766912 + | DNA translocase RALTA_A0741 767294 - 766962 - | hypothetical protein; putative exported protein TERM 623 767389 - 767435 + H 78 -10.1 -4.0251 | gap 2, overlap 767390 767395 TTCATCTCGTCGCGG TCAAGGCGCCGGGCGTCGTGCCG GAA TGGC-TGACGCCCGGC-CGTAGG TTTGCTTGTGGTCAT TERM 624 767395 - 767431 + H 78 -15.2 -2.72436 | overlap 767390 767389 TCGTCGCGGTCAAGG CG-CCGGGCGTCGTGCCG GAA TGGC-TGACGCCCGGCCG TAGGTTTGCTTGTGG RALTA_A0743 767790 - 768425 + | putative periplasmic outer membrane lipoprotein carrier protein RALTA_A0744 768422 - 768871 + | hypothetical protein TERM 625 768866 - 768846 - Tf 83 -9.7 -4.26903 | CCGATGCGATGAAAA CCCTGGC CGACCGC GCCAGGG GCTAGCACCTCGCCC RALTA_A0745 769036 - 768899 - | hypothetical protein TERM 626 769096 - 769153 + GH 84 -16.2 -3.05384 | gap 3 GCGCGTTGCTGGCAG GC-TGCGCGGCCGCGCCGACGGAGCCGGC AGC GCCGGCACCGGCG-CCCGGCC-CGCAAGG TTCGCTCGGCACGCC RALTA_A0746 769017 - 769370 + | putative lipoprotein fbpA 769556 - 770593 + | Iron(III)-binding periplasmic protein precursor RALTA_A0748 771362 - 770691 - | hypothetical protein fbpB 773110 - 771467 - | Iron(III)-transport system permease fbpC 773263 - 774396 + | Iron(III)-transport system ATP-binding protein TERM 627 775557 - 775515 - g 79 -15.6 -3.34233 | gap 1, overlap 775545 CTACAACGCCTACAA CGCCGCGCGCGCCTTCGTC GCCAAG GAC-AAGTCGCGCGCGGTG CCGGTGCACCTGCGC rarA 774475 - 775869 + | recombination helicase ATPase serS 775945 - 777249 + | serine tRNA synthetase; also charges selenocystein tRNA with serine TERM 628 777295 - 777264 - f 100 -5.9 -5.40474 | gap 1 AGGCGCCGAAAAAAA CTGCCGCCAGCC TCTTGCATC GGCTGGCAG-AG CATGGCTATAATTTC TERM 629 777487 - 777512 + F 100 -14.7 -5.42198 | opp_overlap 777485 GTAGTAAAACTCAGG CCGACGCCCAC GAAA GTGCGCGTCGG TTTTGTTTTTTCCGC TERM 630 778043 - 778098 + G 78 -16.6 -2.98942 | overlap 778033 CGAGGCCGCCCACGC GCGCGGCGTGGCGCTGGACCGCGCGC AGGC GCTGGCGGTGCTGTGCCACGACGCGG TCTATGTGGCCGGCT TERM 631 778175 - 778128 - g 73 -12.6 -3.47322 | gap 1, overlap 778124 778125 778156 TGCGAGCACAACGAA GC-CGCCTCGGCCGCCATGATCG ATA CGATCGCGCCCGGCGAGGCGCGC GGGGTGCGGGAGCGC RALTA_A0753 777630 - 778529 + | conserved hypothetical protein, DUF1653 RALTA_A0755 780853 - 779534 - | putative hemolysin-related membrane protein; putative Mg2+ and Co2+ transporter RALTA_A0754 778522 - 779652 + | putative membrane-associated phospholipid phosphatase, PAP2 superfamily RALTA_A0756 781902 - 780937 - | putative transcriptional regulator, LysR family TERM 632 782283 - 782319 + G 70 -12.2 -3.26471 | gap 1 GATGCGCTTTCGCCC GGCGGCGGACCCGGCGC AATG GCGCTGGCTG-GCCGCC TTCATGTCGGCCTGC TERM 633 782361 - 782382 + G 71 -2.9 -4.63218 | gap 1, overlap 782364 CAGCGAGGCGACCAC GCGCAAGCTG CTG CGGCTGG-GC TTTTATTCGCGCGAC dadA3 782047 - 783330 + | D-amino acid dehydrogenase 2 small subunit gltI2 783436 - 784347 + | glutamate/aspartate ABC transporter,periplasmic binding component TERM 634 784511 - 784481 - f 72 -11.9 -3.29987 | overlap 784479 784501 CATAGCAGCACAACA GCCGG-CGGCGCTCC AAA AGAG-GCCGGCCGGC GCTGCCCCACACTGC fliY 784551 - 785372 + | cysteine ABC transporter, periplasmic binding component TERM 635 785380 - 785436 + F 76 -7.9 -4.27441 | gap 2, overlap 785391 TCAAGTAATCAGGGC GGTATCATGT--CGCGGCGCGGCGGCC TGCAT GGCTGCCGCGCCGCTTTGCTTTGTGCC TTTATTGCTGATCCT TERM 636 785391 - 785423 + F 100 -25.6 -4.15669 | overlap 785380 GGGCGGTATCATGTC GCGGCGCGGCGGCC TGCAT GGCTGCCGCGCCGC TTTGCTTTGTGCCTT RALTA_A0760 785469 - 786128 + | putative amino acid ABC transporter, membrane component TERM 637 786168 - 786147 - T 100 -15.9 -4.27316 | opp_overlap 786147 CGCGCCAAGGCAAAA GGCCAGCTC CACG GAGCTGGCC TTTTTTGCATCAACG TERM 638 786147 - 786168 + T 100 -15.9 -5.08824 | opp_overlap 786147 CGCGCCAAGGCAAAA GGCCAGCTC CACG GAGCTGGCC TTTTTTGCATCAACG RALTA_A0761 788759 - 786189 - | Cyanophycin synthetase RALTA_A0762 791437 - 788804 - | Cyanophycin synthetase TERM 639 790043 - 790073 + g 70 -12.4 -3.2794 | overlap 790055 GTTGACGATGGCGCG GCCCACCGGGCGCG GCG TGCCCTCGGCGGGC TTGATATGCATCAGC TERM 640 790088 - 790129 + g 72 -14.3 -3.14132 | overlap 790055 790115 CTTGATATGCATCAG CAGCCCGGGGCCGGCGTTG ACTT CGACGATGGCGCCGCGCTG TTCGTGCAGCGGGCG TERM 641 791036 - 791068 + g 72 -14.1 -3.21099 | CGCGGCCATGACCAG GTCGCGCGCGCCG AACAGGG CGGCGCGGGTGAC TTCCTCGTGCCAGGC TERM 642 792053 - 792086 + G 70 -12.3 -3.29144 | CCAGCGCGACGCCGC CGCCTCGCGCCCGGC GTCC GGTGGGGGCGAGGTG TTGTGCCCGACGTGC TERM 643 792848 - 792833 - g 76 -7.5 -4.25104 | overlap 792844 GTTCGCCCAGGAAAA GCGCG AAGTCA CGCGC TTCCGCGAAGCCAAC RALTA_A0763 791676 - 793970 + | putative ABC transporter, ATP-binding membrane component RALTA_A0764 793960 - 794454 + | hypothetical protein TERM 644 794490 - 794457 - T 75 -14.5 -2.78384 | gap 1 CCGCTTCCTATGAGA GGCAGGGCGCGGCAGC CTG GCCACCGCGCTC-GCC AGGCGCCGCCGGGAG RALTA_A0765 794908 - 794507 - | hypothetical protein RALTA_A0766 796099 - 795008 - | putative Fimbrial protein TERM 645 795147 - 795176 + g 77 -15.1 -3.24747 | gap 1 ATGGCATTGCGCACC TGC-AGCGGTACCG GCG CGGTGCCGCTGGCA TTCATGATCTGCACG TERM 646 796236 - 796213 - R 100 -13.8 -5.33405 | CGCACCAAAGAAAAA GCCCTCGGCC GGGT GGGCGAGGGC TTGAAGTGGCAGCGG TERM 647 796300 - 796325 + r 100 -11.9 -5.0133 | overlap 796303 CCTGTGTGGCAGGTC CGGCATCCCCA AATC TGGGGATGTTG TTTTTTCCGCGGCTG TERM 648 796303 - 796322 + r 100 -12.2 -4.61482 | overlap 796300 GTGTGGCAGGTCCGG CATCCCCA AATC TGGGGATG TTGTTTTTTCCGCGG TERM 649 796367 - 796391 + r 90 -13.6 -4.00038 | gap 1, opp_overlap 796367 CCGGGCAAAGAAAAA CCCGCG-CAGC CTGA GCTGTCGCGGG TTTCTGGTCCTGCTG TERM 650 796391 - 796367 - R 100 -13.6 -5.27335 | gap 1, opp_overlap 796367 CCGGGCAAAGAAAAA CCCGCG-CAGC CTGA GCTGTCGCGGG TTTCTGGTCCTGCTG RALTA_A0767 797561 - 796872 - | putative 2-phosphoglycolate phosphatase ubiG 798310 - 797558 - | bifunctional: 3-demethylubiquinone-9 3-methyltransferase; 2-octaprenyl-6-hydroxy phenol methylase TERM 651 798392 - 798409 + r 77 -12.7 -3.67597 | opp_overlap 798392 TGTACCAAAAAAAAA GCCCAGC TTGC GCTGGGC TTCTTGGATCGGAAG TERM 652 798409 - 798392 - R 100 -12.7 -6.15828 | opp_overlap 798392 TGTACCAAAAAAAAA GCCCAGC TTGC GCTGGGC TTCTTGGATCGGAAG RALTA_A0769 799086 - 798433 - | putative outer membrane protein, ompA domain TERM 653 799565 - 799543 - g 71 -2.7 -4.65933 | gap 1, overlap 799539 CATTCGCAAAAGAAA CCCTTCC-GG TCTC CCTAGAAGAG GAAATGCGCCGCTCC TERM 654 801469 - 801433 - g 74 -13.7 -3.25192 | opp_overlap 801430 801444, overlap 801437 CGGAAGGCGAGAAGA TCAACGTCATCCTGCCG GTG CGGCAGTTTGACGCCGA GCATTTCATCTTCAT TERM 655 801465 - 801437 - g 73 -13.1 -3.42013 | opp_overlap 801430 801444, overlap 801433 AGGCGAGAAGATCAA CGTCATCCTGCCG GTG CGGCAGTTTGACG CCGAGCATTTCATCT gyrA 799521 - 802199 + | DNA gyrase, subunit A, type II topoisomerase RALTA_A0771 802294 - 802857 + | conserved hypothetical protein, putative exported protein TERM 656 802941 - 802923 - f 76 -13.1 -3.53012 | opp_overlap 802937 GGCGGGCGCTGCAAA CCGGGGG GCTGA CCCCCGG GCGCCCAACGGGGCG TERM 657 802937 - 802960 + F 70 -10.2 -3.56092 | gap 1, opp_overlap 802923 ACCGGGGGGCTGACC CCCGGGCGCCC AAC GGG-GCGCGGG TTTGAGGGATAATGG TERM 658 802973 - 802999 + F 86 -8.6 -4.65895 | opp_overlap 802973 GGGTTTGAGGGATAA TGGCTGCTTGGG TAA CACCGGCAGCCA TTTTTCCATCCCCCG TERM 659 803321 - 803309 - g 72 -9.1 -4.09685 | TGCCATCGGCGAAAA CGGCA TCG TGCCG CTGAACCTGATGCGC serC 802980 - 804176 + | 3-phosphoserine/phosphohydroxythreonine aminotransferase TERM 660 804181 - 804237 + F 76 -7.9 -4.25104 | gap 2 CCTCCGCCTGACGCG CATTCC-CGCTGGCGGGCCCGC-GC ATGCCATTC GCGGCGTGCCGGCCGGCGCGGGACG TTTTCCTGGCCGCCA pheA 804282 - 805445 + | fused chorismate mutase P ; prephenate dehydratase TERM 661 805666 - 805631 - g 79 -8 -4.4078 | overlap 805632 CGCCTCCAACGAAAA CCCGCTGGGCATGCCG GATT CGGCCCGCGCTGCGGT GGCCGCGGCCGTCGC TERM 662 806585 - 806567 - g 81 -7.3 -4.63218 | overlap 806569 CTTGCCGGAAGAAAA CGCGGCG TTTAT CGCGGCG CTGGAGCGGGCGCTG hisC 805473 - 806606 + | HISTIDINOL-PHOSPHATE AMINOTRANSFERASE TERM 663 807186 - 807158 - g 95 -13.7 -4.25104 | CCCGCTGCAGGAAAA CGCGCGCGCCGAC GTC GCCGCCGTGCGCG CCATGTGGGAAAGCG tyrA 806679 - 807590 + | PREPHENATE/Arogenate DEHYDROGENASE aroA 807640 - 808944 + | 3-enolpyruvylshikimate-5-phosphate synthetase RALTA_A0777 809182 - 808934 - | conserved hypothetical protein; putative exported protein cmk 809306 - 809974 + | cytidine monophosphate (CMP) kinase TERM 664 810027 - 810053 + F 100 -13.6 -4.37886 | overlap 810012 810025 TCCGTACCCGATGGC GCCGGTCCGGGC TTT GCCCCGGCTGGC TTTTGTCAAACCTGA TERM 665 810936 - 810912 - g 76 -7.7 -4.27443 | overlap 810909 CGACCAGGAAAAGAA CCGCGTCTCGC TGG GCGTGAAGCAG CTGGGCGAAGATCCG rpsA 810139 - 811833 + | 30S ribosomal subunit protein S1 TERM 666 811938 - 811891 - g 91 -11.8 -4.57073 | overlap 811893 GAGCTTGTCGAAAAA CTGGCTGCCCGCTTCCCCCAGC TGCT GCTGCGGGATGCGGACATCTCG GTGAAAACGATACTC ihfB 811858 - 812283 + | Integration host factor, beta subunit TERM 667 812337 - 812322 - f 86 -11.8 -4.16842 | opp_overlap 812322 TGTATTGTCAAGAAA GCGCCC CGTG GGGCGC TTTTTTTGTGCCGAT TERM 668 812322 - 812337 + F 100 -11.8 -5.61596 | opp_overlap 812322 TGTATTGTCAAGAAA GCGCCC CGTG GGGCGC TTTTTTTGTGCCGAT RALTA_A0781 812566 - 812907 + | conserved hypothetical protein; putative TRANSMEMBRANE PROTEIN RALTA_A0782 812911 - 814143 + | conserved hypothetical protein; putative TRANSMEMBRANE PROTEIN ugd 814179 - 815570 + | UDP-GLUCOSE 6-DEHYDROGENASE TERM 669 815632 - 815611 - f 73 -12.9 -3.2496 | opp_overlap 815610, overlap 815606 CAACCGATAAGCTAA CGCGGTGGC CGCT GCCGCCGCG ATATTGCCAAGGATC TERM 670 815803 - 815846 + G 72 -14.4 -3.14564 | gap 1 CAAGCGCAGCGACGA GCGCCTCGGCGGCGC-CGCCA ACG TGGCCCGCAACGCCGCGGCGC TTGGTGCGCGCGTCG rfaE 815651 - 816598 + | ADP-HEPTOSE SYNTHASE PROTEIN (fused heptose 7-phosphate kinase ; heptose 1-phosphate adenyltransferase) TERM 671 816584 - 816609 + F 77 -14.7 -2.83504 | gap 1, overlap 816584 816586 816597 TATCCCGAATTGTTC GGCGCCGCCGCC TGA GGC-GCGGCGTC CTCTTTTGATCCGAC TERM 672 816584 - 816610 + F 78 -12.3 -3.73042 | overlap 816584 816586 816597 TATCCCGAATTGTTC GG-CGCCGCCGCC TGA GGC-GCGGCGTCC TCTTTTGATCCGACC TERM 673 816586 - 816607 + F 74 -13.7 -2.96321 | gap 1, overlap 816584 816584 816597 TCCCGAATTGTTCGG CGCCGCCGCC TGA GGC-GCGGCG TCCTCTTTTGATCCG rfaD 816626 - 817621 + | ADP-L-glycero-D-mannoheptose-6-epimerase, NAD(P)-binding RALTA_A0786 817787 - 818194 + | conserved hypothetical protein; nucleic acid binding Helix-hairpin-helix motif TERM 674 818211 - 818239 + F 93 -16 -3.76482 | CTAGCATTGCTGCCC TGCGCCCGGTCG TGCCT CGGCCGGGTGCA TTGTTGCTGGTATGC TERM 675 818878 - 818845 - g 79 -10.9 -4.07568 | overlap 818846 CGCCTGGGTGGAAAA GCTGATGCCGCCGGT GGTG ACCGGCGCCATCGTC GCGGCGATCGGGCTG rutG 818426 - 819727 + | pyrimidine permease (putative) cysM 819863 - 820765 + | cysteine synthase B (O-acetylserine sulfhydrolase B) TERM 676 820791 - 820810 + T 100 -15 -4.17701 | opp_overlap 820791 GCAAGAAAAGAAAAA GGCCTCGC GGAT GCGAGGCC TTTGTGCTTTGTGCC TERM 677 820810 - 820791 - T 100 -15 -5.62288 | opp_overlap 820791 GCAAGAAAAGAAAAA GGCCTCGC GGAT GCGAGGCC TTTGTGCTTTGTGCC mltB 822026 - 820848 - | membrane-bound lytic murein transglycosylase B, putative precursor RALTA_A0790 822125 - 823048 + | putative enzyme, Histone deacetylase superfamily RALTA_A0791 823061 - 823864 + | putative Enoyl-CoA hydratase/isomerase TERM 678 823973 - 824007 + F 100 -10.7 -5.13722 | gap 1, opp_overlap 823973 823972 823970 CAGAAAAATAACGAG CGGCAACA-GCGCTGG AGAT CCCTCGCCTGTTGCCG TTTTCTTTTGGTCAC metN1 824029 - 825063 + | D-and L-methionine ABC transporter, atp_binding component metI1 825053 - 825706 + | D-and L-methionine ABC transporter, membrane component metQ1 825739 - 826536 + | D-and L-methionine ABC transporter, periplasmic component TERM 679 826619 - 826644 + F 89 -12.5 -4.11394 | opp_overlap 826619 826620, overlap 826620 826622 TCCAACCGGTAAAAA GGGTGCCGGGC CTAT GCCCGGCATCA TTTTGCCGATAAAAT TERM 680 826644 - 826619 - f 95 -10.3 -4.62471 | opp_overlap 826619 826620 826622, overlap 826620 TCCAACCGGTAAAAA GGGTGCCGGGC CTAT GCCCGGCATCA TTTTGCCGATAAAAT TERM 681 826643 - 826620 - f 77 -13.8 -3.37 | opp_overlap 826620 826619 826622, overlap 826619 CCAACCGGTAAAAAG GGTGCCGGGC CTAT GCCCGGCATC ATTTTGCCGATAAAA TERM 682 826620 - 826643 + F 84 -16 -3.06515 | opp_overlap 826619 826620, overlap 826619 826622 CCAACCGGTAAAAAG GGTGCCGGGC CTAT GCCCGGCATC ATTTTGCCGATAAAA TERM 683 826622 - 826641 + F 78 -15 -3.09004 | opp_overlap 826620 826619, overlap 826620 826619 AACCGGTAAAAAGGG TGCCGGGC CTAT GCCCGGCA TCATTTTGCCGATAA etfB 826757 - 827506 + | ELECTRON TRANSFER FLAVOPROTEIN, BETA-SUBUNIT etfA 827526 - 828461 + | ELECTRON TRANSFER FLAVOPROTEIN, ALPHA-SUBUNIT TERM 684 828517 - 828544 + F 100 -13.5 -4.76644 | gap 1, opp_overlap 828514 GGCAGCAAGTTACGA GCCGTTC-CGGG GGCAA CCCGTGAACGGC TTTTTCATACATGTT RALTA_A0797 828571 - 830355 + | putative ACYL-COA DEHYDROGENASE OXIDOREDUCTASE TERM 685 830385 - 830405 + T 100 -14 -4.7254 | opp_overlap 830385 GGCGCATCGAAAAAA GGGCGACC CGCAA GGTCGCCC TTTTTGCTGGCGGGT TERM 686 830405 - 830385 - T 100 -14.7 -5.08824 | opp_overlap 830385 GGCGCATCGAAAAAA GGGCGACCC GCA AGGTCGCCC TTTTTGCTGGCGGGT dadA1 831735 - 830431 - | D-amino acid dehydrogenase subunit TERM 687 831160 - 831207 + g 78 -16.8 -3.05384 | gap 1, overlap 831165 GGTTTCGTCATTGGG AAGGCGCAGGCCGCCGGCCAGCT TGT GGC-GGACGGCGGCCAGCGCCGG TTCGCTCGCGGCGAG TERM 688 831853 - 831840 - H 78 -3.1 -4.98616 | GGAAAACAGGAAAAA CTCAT GAGA ACGAG TCGCCAGCCCCAGCG lrp1 831843 - 832346 + | leucine-binding transcriptional regulator RALTA_A0800 832358 - 833587 + | conserved hypothetical protein, DUF85, SAM radical RALTA_A0801 834398 - 833907 - | conserved hypothetical protein; putative TRANSMEMBRANE PROTEIN TERM 689 834428 - 834486 + r 74 -12.9 -3.28791 | gap 1, opp_overlap 834468 834469 TTTCAAGCCTGGGCA TGCGGGCCGG-CGGTGCGCCGGCGCAGC AGCG GCGGCACAAGGGTACCGGCCGGCCCACA TTGTACGCCGGCAGT RALTA_A0802 834704 - 834546 - | hypothetical protein RALTA_A0803 835387 - 834992 - | conserved hypothetical protein; putative exported protein TERM 690 835512 - 835528 + r 86 -15.1 -3.54459 | opp_overlap 835512 TTTCGCACGCACAGA GCCCCGC CAG GCGGGGC TTTCCGCCGGATTCA TERM 691 835528 - 835512 - R 79 -15.1 -2.91264 | opp_overlap 835512 TTTCGCACGCACAGA GCCCCGC CAG GCGGGGC TTTCCGCCGGATTCA RALTA_A0804 836665 - 835541 - | putative quinone deshydrogenase rpsP 836818 - 837069 + | 30S ribosomal subunit protein S16 TERM 692 837078 - 837116 + F 83 -15.4 -3.18264 | gap 1, opp_overlap 837099, overlap 837083 TGCCTGATTGCCGCC TGC-AACGCGCCTTGCC ATAACC GGCGGGGCGCGTTTGCA TTGGTACATACGCAC TERM 693 837083 - 837110 + F 84 -14.1 -3.78597 | opp_overlap 837099, overlap 837078 GATTGCCGCCTGCAA CGCGCCTTGCC ATAACC GGCGGGGCGCG TTTGCATTGGTACAT rimM 837191 - 837814 + | 16S rRNA PROCESSING PROTEIN TERM 694 838511 - 838487 - g 84 -7.8 -4.70659 | gap 1 GCCGAGATTGAAAAA TGG-CGGCGCC AGCA GGCGCTGGCCA ATACCGCGAGCAAGC trmD 837857 - 838639 + | tRNA (guanine-7-)-methyltransferase TERM 695 838726 - 838712 - f 100 -8.6 -5.28176 | overlap 838719 GTTACGGAGAAAAAA CGATGA ACC TCATCG AACAGATCGAGAAGG rplS 838714 - 839106 + | 50S ribosomal subunit protein L19 TERM 696 839115 - 839140 + F 84 -13.9 -3.72576 | opp_overlap 839107, overlap 839116 GGAGTAAGCCGGACA TGCCGGCCGGG GCGA CCCGGCCAGCG TTTCCTCAGGAAGGG TERM 697 839116 - 839139 + F 79 -15.2 -2.83403 | opp_overlap 839107, overlap 839115 GAGTAAGCCGGACAT GCCGGCCGGG GCGA CCCGGCCAGC GTTTCCTCAGGAAGG TERM 698 839170 - 839153 - f 73 -12.7 -3.14132 | opp_overlap 839153 GCGTTTCCTCAGGAA GGGCACC CCAG GGTGCCC TTTTTGCATGGCCGC TERM 699 839153 - 839170 + F 100 -12.7 -4.65895 | opp_overlap 839153 GCGTTTCCTCAGGAA GGGCACC CCAG GGTGCCC TTTTTGCATGGCCGC RALTA_A0809 839251 - 839931 + | putative hydrolase, NUDIX domain RALTA_A0810 840864 - 840016 - | conserved hypothetical protein; putative sulfurtransferase, Rhodanese family TERM 700 842599 - 842573 - g 78 -12.3 -3.77722 | overlap 842574 CGCAACGAGGAAGAA GTGCGCCAGCT GCTGG AGCTGGCGCAG CGCGTCGAGGGCATG TERM 701 842598 - 842574 - g 75 -15.8 -2.86151 | overlap 842573 GCAACGAGGAAGAAG TGCGCCAGCT GCTGG AGCTGGCGCA GCGCGTCGAGGGCAT dnaE1 841073 - 844585 + | DNA polymerase III, alpha subunit lgtG 845686 - 844616 - | glycosyl transferase G lgtF 846497 - 845733 - | GLYCOSYL TRANSFERASE F, potentially involved in core lipopolysaccharide biosynthesis TERM 702 846347 - 846379 + g 74 -16.2 -2.81464 | CCTCGGTCTGGATGA CGGTGGCGCCCGCG GCACG CGCGATCGCCACCG TGTCGTCCGTGCTGG lgtE/B 846805 - 847575 + | glycosyl transferase msbA 847624 - 849399 + | lipidA exportABC system; composite ATP-binding membrane component TERM 703 849453 - 849418 - T 100 -23.4 -3.14132 | opp_overlap 849424, overlap 849424 GGCGGCGCTCATCAA GCAAAAGGGCCGGCGC ATTT GCGCCGGCCCTTTTTC ATTCCCGTGCCCGGG TERM 704 849447 - 849424 - T 100 -21 -4.45544 | opp_overlap 849424, overlap 849418 GCTCATCAAGCAAAA GGGCCGGCGC ATTT GCGCCGGCCC TTTTTCATTCCCGTG TERM 705 849424 - 849447 + T 100 -21 -4.87291 | opp_overlap 849424 849418 GCTCATCAAGCAAAA GGGCCGGCGC ATTT GCGCCGGCCC TTTTTCATTCCCGTG rfaC2 850449 - 849472 - | Lipopolysaccharide heptosyltransferase RALTA_A0817 850631 - 851221 + | conserved hypothetical protein; putative peroxidase-related enzyme TERM 706 851257 - 851221 - T 84 -17.2 -2.75481 | gap 1, opp_overlap 851243 GCCGAAGGCGAAGTA GCGGCCGTGGCGCCGCG ATGC CGCGGCGCC-CGGGCTC AGCGCACCTCGGCGC RALTA_A0818 851765 - 851256 - | putative outer membrane lipoprotein RALTA_A0819 852044 - 852373 + | putative membrane lipoprotein, cell wall extensin motif TERM 707 852408 - 852375 - f 100 -26.9 -3.53444 | opp_overlap 852381, overlap 852381 TGATCCGGCCGTAAA GCGAAACAGCCCGCC AGTT GGCGGGCTGTTTCGC TATGGCGGTGGCGGA TERM 708 852381 - 852402 + F 100 -17.3 -3.7108 | opp_overlap 852381 852375 GGCCGTAAAGCGAAA CAGCCCGCC AGTT GGCGGGCTG TTTCGCTATGGCGGT TERM 709 852402 - 852381 - f 100 -17.3 -3.84451 | opp_overlap 852381, overlap 852375 GGCCGTAAAGCGAAA CAGCCCGCC AGTT GGCGGGCTG TTTCGCTATGGCGGT TERM 710 853135 - 853159 + G 72 -13.5 -3.19463 | overlap 853118 CGACGTCGTGTCGGC GGCGCCTGACG ACA CGTCGTGCGCC TTCGTCACTCATAAC RALTA_A0820 852641 - 853672 + | hypothetical protein RALTA_A0821 853806 - 854336 + | hypothetical protein RALTA_A0822 854425 - 854964 + | hypothetical protein RALTA_A0823 855562 - 856338 + | hypothetical protein TERM 711 857141 - 857157 + G 91 -3 -5.40072 | overlap 857134 857142 GGACCGACGACAACC TGTCTT TCTAC AAGACG TTTTTTTCGGCGGCA RALTA_A0824 856608 - 857294 + | conserved hypothetical protein, DNA-binding domain RALTA_A0825 858227 - 857406 - | hypothetical protein; DNA-binding domain TERM 712 857454 - 857482 + g 100 -12.4 -5.23943 | overlap 857455 AGCCTCATAGATTTT TCGCTGCCGCTC AGCTC GATCGGCAGCGG TTTCTTTTTTTACTA TERM 713 857455 - 857481 + g 82 -13.7 -3.71925 | overlap 857454 GCCTCATAGATTTTT CGCTGCCGCTC AGCTC GATCGGCAGCG GTTTCTTTTTTTACT RALTA_A0826 858467 - 858288 - | hypothetical protein RALTA_A0827 862074 - 858781 - | conserved hypothetical protein, putative DNA-binding ATP-binding helicase RALTA_A0828 863756 - 862092 - | hypothetical protein RALTA_A0829 864493 - 863735 - | conserved hypothetical protein; putative outer membrane protein, OmpA motif TERM 714 864465 - 864477 + g 75 -4.7 -4.56597 | overlap 864457 864466 TCCTCCCGCCCCCGC CGGCG GGG CGCCA TTTTTACGCCAAGCA RALTA_A0830 866499 - 864508 - | conserved hypothetical protein; putative DNA-binding ATP-binding helicase TERM 715 866183 - 866202 + g 74 -15 -3.09635 | opp_overlap 866167, overlap 866186 866198 CCATTCGCCATCGCG GTGGCGCG CCAA CGCGCCAC TTCCATCATGCCGGT RALTA_A0832 866896 - 868734 + | type I restriction-modification methylase M subunit, N-6 DNA Methylase RALTA_A0833 868731 - 870107 + | type I restriction-modification methylase S subunit TERM 716 870449 - 870427 - g 73 -7.7 -4.18018 | GCTGGTGATGGAAAA GCTGGGCAA GGATG TTGCCGAGC GAATCGAATGGGCCG TERM 717 870920 - 870934 + G 74 -11.4 -3.72893 | GATCCGGCCACCGTT GCCCTC GAA GAGGGC TTTAGTCGGGACGTC RALTA_A0834 870104 - 871057 + | hypothetical protein TERM 718 872632 - 872644 + G 70 -3.3 -4.4648 | overlap 872615 872614 ATTCGATGCGCCAGG CCATC GAG GAGGG TTTTATCCTCGACGT RALTA_A0835 871098 - 874223 + | type I restriction-modification deoxyribonuclease, R subunit RALTA_A0836 874337 - 874630 + | hypothetical protein TERM 719 874743 - 874727 - Tf 81 -10.1 -4.10657 | TGATAGCTTTCAAAA GCCGGTC CAG GACCAGC CAGAGGCAGGGTCCC RALTA_A0837 875275 - 874961 - | hypothetical protein RALTA_A0838 875202 - 875519 + | hypothetical protein RALTA_A0839 876694 - 876233 - | hypothetical protein RALTA_A0840 876667 - 877875 + | hypothetical protein RALTA_A0841 877851 - 878045 + | hypothetical protein RALTA_A0842 878638 - 878261 - | hypothetical protein TERM 720 879413 - 879393 - g 100 -3.1 -5.61596 | overlap 879394 AGCGGCACAAAAAAA GGCCTCCGG TCG CCGTAAGGC GGTAGCCACAGAGTG RALTA_A0845 879112 - 879537 + | hypothetical protein; ATPase motif RALTA_A0846 879614 - 879769 + | hypothetical protein RALTA_A0849 880719 - 880432 - | putative phage integrase (part 3) RALTA_A0850 881251 - 880598 - | putative phage integrase (part 2) RALTA_A0851 881636 - 881223 - | putative phage integrase (part 1) rng 883221 - 881755 - | RNase G, ribonuclease G TERM 721 881843 - 881855 + g 70 -9.1 -3.92324 | overlap 881835 AAGTCGCCCAGCATC GCCAG GTG CTGGC TTTCCTCTTCCAGGA TERM 722 882740 - 882725 - G 75 -6 -4.46212 | overlap 882727 GTGCGCACGATAAAA CCGCCG CGCT CGTCGG CTGGCACCAGCCCCT RALTA_A0853 883970 - 883356 - | conserved hypothetical protein, Maf-like domain TERM 723 883588 - 883565 - G 71 -11 -3.55563 | gap 1 AGGTGACTTCGGAAA CCGACA-GCGC GTG GCGCATGCCGG TGGTCGATACCACCG RALTA_A0854 884492 - 884013 - | hypothetical protein RALTA_A0855 885300 - 884554 - | hypothetical protein nadD 886098 - 885364 - | nicotinic acid mononucleotide adenylyltransferase, NAD(P)-requiring hemF 887020 - 886109 - | coproporphyrinogen III oxidase TERM 724 886856 - 886910 + g 82 -16.3 -3.29144 | gap 1 GCGCTCCATCACCGC GCCGCCTTCCAGGATGCGGGTGCGGC CACT GCCGCGCAGGCGTTC-GGTGGGCGGC TTCTCCCAGGCGTCG TERM 725 887070 - 887089 + r 85 -15 -3.64822 | opp_overlap 887053 887050 887041 GGCCGGATGGCAGTC CGGCAGCC CGTC GGCTGCCG TTTGCGTCACAGCAT purD 888456 - 887188 - | phosphoribosylglycinamide synthetase (GAR synthetase) TERM 726 888524 - 888490 - R 79 -13.4 -3.42684 | opp_overlap 888479, overlap 888488 AAACGCATGCAAAGA GGCGGCAGCTGGGTCC TGT GAGCCGGGCTGCCGCC GTTGGGGAGCTTGAT RALTA_A0859 889271 - 888546 - | conserved hypothetical protein, DUF28 TERM 727 888579 - 888614 + g 83 -12.4 -3.9777 | overlap 888578 888610 GTTGGTGAAGACTTC CTGCACGTCGTCCAGG TTTT CCAGGGCGTCGAGCAG TTTCTGCATCTTGGC TERM 728 889206 - 889229 + g 72 -3.8 -4.53047 | gap 1, overlap 889217 GCGGGTCCAGATCTT GCCGC-GCT TGGCGTC GGCGGCGGC TTTCTTGTGTTTGAT TERM 729 890795 - 890783 - g 78 -9.1 -4.25283 | ATCCGCCTATGAAAA GCTGC GCG GCAGC GTGCCGACGGTGGCG RALTA_A0860 889524 - 891050 + | putative enzyme, nucleoside triP hydrolase domain RALTA_A0861 891232 - 891068 - | hypothetical protein upp 892010 - 891360 - | uracil phosphoribosyltransferase TERM 730 892084 - 892047 - R 93 -20.6 -3.06183 | gap 1, opp_overlap 892060 892061 GGGATGGCGAGTGAA GCGCG-CGCGCGAGGCC GGTTG GGGCTCGCGCGCCGCGC CGTTGCAGCCGGATT TERM 731 892138 - 892109 - R 80 -15 -3.18274 | gap 1, opp_overlap 892108 892109 CGGATTGTAATGGAA GCG-GGCCGCCGC GCCCG GCAGCGGCCCCGC GTTTGCCCCGCGCTT RALTA_A0863 893572 - 892172 - | putative General substrate transporter, Major facilitator superfamily MFS_1 TERM 732 893497 - 893523 + g 82 -18 -3.05816 | ACGACGCTGCGCGCG CGCTGGGCTGGG GCG CCGAGCCCAGCG TTGCGTCCGGGATGG TERM 733 893655 - 893632 - R 71 -9.6 -3.7108 | gap 1, overlap 893635 ACGCGTAGATCGAAA CAGGCCGGCAC GTG ATGCCGGC-TG CTGCGGGATGCGGCG RALTA_A0865 897052 - 894125 - | putative Cytochrome c, alcohol dehydrogenase-like subunit TERM 734 895363 - 895415 + g 71 -10.5 -3.70751 | gap 3, opp_overlap 895363, overlap 895412 CGCGCCAGGGCAACA GCGTGGC-GCACACGCCGGCCGCGGC GGCG GCCGCTGCCG-CGA-TCCAGCCGCGC TTCTTGCGCTTGTTG TERM 735 895959 - 895904 - G 71 -10.8 -3.64703 | gap 1 GCGGGCGTAGGCAAA GCCGCGGCCGTGCCGCACGTTGCCCGC GGC GGGGTTGGCGTGCGGCGCGCCCG-GGC GCCAGCCGGCGCGCT RALTA_A0866 897579 - 897049 - | putative ISOQUINOLINE 1-OXIDOREDUCTASE (iorA) RALTA_A0867 898797 - 897637 - | Salicylate 1-monooxygenase TERM 736 898444 - 898426 - G 71 -2.2 -4.56597 | overlap 898429 CTTCTTGTTGAAAAA CAGCGTGC CGG GCGCGACG GCGTCGGTCAGCAGC RALTA_A0868 899174 - 899926 + | putative MALEATE CIS-TRANS ISOMERASE RALTA_A0869 899938 - 900768 + | putative hydrolase RALTA_A0870 900797 - 901876 + | hypothetical protein TERM 737 902061 - 902023 - g 78 -16.1 -3.04263 | opp_overlap 902026 902029 AGGCCATCCGCAACA CCCAGCCGCTGCT-GCGCG CCG CGCGCGAGCAG-GGCTGGC CGGTGGCGCACAGCC TERM 738 902224 - 902234 + G 75 -4.6 -4.57569 | opp_overlap 902221 TGGTGCGCAAGACGG TGCC GTC GGCG TTTTTCGGCACCTCG RALTA_A0871 901869 - 902504 + | putative N-carbamoylsarcosine amidase RALTA_A0872 903287 - 902532 - | putative transcriptional regulator, TetR family TERM 739 903528 - 903562 + G 84 -20.7 -2.87344 | overlap 903542 CGCAGGCGGCGGCGC GTCCGGCGCCGGGCC AGCCC GGCGCGGCGTCGGAC TATGTGCCGGCGCTG RALTA_A0873 903404 - 905683 + | putative Isoquinoline 1-oxidoreductase RALTA_A0874 906212 - 905736 - | putative transcriptional regulator, MarR family RALTA_A0875 906416 - 907315 + | conserved hypothetical protein, DUF6; putative TRANSMEMBRANE PROTEIN TERM 740 907660 - 907642 - g 71 -11.6 -3.61715 | opp_overlap 907641 907642, overlap 907643 CATCCTGGTCAACAA CGCCGGCG GCC CGCCGCCG GGCAATTTCCGCGAC RALTA_A0876 907370 - 908158 + | putative DEHYDROGENASE/REDUCTASE OXIDOREDUCTASE PROTEIN mgsA 908221 - 908622 + | METHYLGLYOXAL SYNTHASE PROTEIN qor1 908673 - 909650 + | quinone oxidoreductase, NADPH-dependent TERM 741 909703 - 909677 - T 100 -22.4 -4.72272 | opp_overlap 909677 CGCGGGCATGAAAAA TCCCCGGGACAC TCG GTGTCCCGGGGA TTTTTTGTTGGTGCG TERM 742 909677 - 909703 + T 100 -22.4 -5.5112 | opp_overlap 909677 CGCGGGCATGAAAAA TCCCCGGGACAC TCG GTGTCCCGGGGA TTTTTTGTTGGTGCG RALTA_A0879 910012 - 909719 - | conserved hypothetical protein, DUF1232 RALTA_A0880 911258 - 910113 - | putative outer membrane LIPOPROTEIN TERM 743 911122 - 911169 + g 93 -13.2 -4.15543 | gap 1, overlap 911148 911151 TTGAGCGGCTCGGCT GCCTGCCCGG-CAGCGGGCGCGG AAG CGGCGCCGGCGGGCTCGGCGGGC TTTTCGGCCTCTTTC TERM 744 911331 - 911311 - R 77 -4.5 -4.82901 | opp_overlap 911314, overlap 911314 911315 TTTCCGTCAGAAAAA CGATCAGGC GCT GCCGGGCCG GAACGGCTTGCCCAG RALTA_A0881 912234 - 911314 - | putative ABC transport system, membrane component RALTA_A0882 913362 - 912253 - | putative ABC transport system, membrane component TERM 745 912593 - 912570 - G 77 -18.2 -2.62184 | TGGCGCCCGAGATCA GCAGCGCGCT CCAC AGCGCGCTGC GCGCCGAGAAGCCGG RALTA_A0883 914911 - 913355 - | putative monosaccharide transport system, ATP binding components TERM 746 914512 - 914561 + g 93 -18.6 -3.39529 | overlap 914545 GGCGGTTGGGCTCCA GCGGCAGGCCGTAGCGC-TCGGCG GTGG CGCGGATGCGCT-CGGCCAGCTGC TTCATGTTGCCTTGC TERM 747 915080 - 915066 - R 76 -12.8 -3.53012 | GCGCGGGGTCCGAAA GGCCCG AAT CGGGCC GGTGTCCAGTCCGTG TERM 748 915143 - 915181 + r 79 -8.7 -4.36914 | opp_overlap 915149, overlap 915144 915146 915147 CGGGCGCGGCACGAA AAAAAACCGCCGCCTCC TTGCC GGAGGCGGCGGTGATGG TTTTATGCCGGGGGG TERM 749 915144 - 915180 + r 70 -12.2 -3.21934 | opp_overlap 915149, overlap 915143 915146 915147 GGGCGCGGCACGAAA AAAAACCGCCGCCTCC TTGCC GGAGGCGGCGGTGATG GTTTTATGCCGGGGG TERM 750 915146 - 915178 + r 80 -14.8 -3.1733 | opp_overlap 915149, overlap 915144 915143 915147 GCGCGGCACGAAAAA AAACCGCCGCCTCC TTGCC GGAGGCGGCGGTGA TGGTTTTATGCCGGG TERM 751 915147 - 915177 + r 86 -18.3 -2.50077 | opp_overlap 915149, overlap 915146 915144 915143 CGCGGCACGAAAAAA AACCGCCGCCTCC TTGCC GGAGGCGGCGGTG ATGGTTTTATGCCGG TERM 752 915175 - 915149 - R 100 -20.9 -5.86061 | opp_overlap 915147 915146 915144 915143 CGGCACGAAAAAAAA CCGCCGCCTCC TTGCC GGAGGCGGCGG TGATGGTTTTATGCC RALTA_A0884 916125 - 915199 - | conserved hypothetical protein, PIRIN-LIKE PROTEIN TERM 753 916760 - 916772 + GH 86 -6.2 -5.00616 | overlap 916760 916759 CGTCGCCGGAAAGTG GCGC CCTGC GCGC TTTTTTGGCCCGGAG RALTA_ACDS916386D 916386 - 916841 + | hypothetical protein RALTA_A0885 916799 - 917515 + | putative glycine betaine/carnitine/choline transport system inner membrane component TERM 754 917985 - 918015 + G 73 -12.4 -3.53224 | opp_overlap 917980 917981 GCCGAAGGAACGCGC GGCCGCCAGCGGCG CGA CCACGCTGTCGGCC TTTGCCGAGCAGATG RALTA_A0886 917542 - 918477 + | putative glycine betaine/carnitine/choline transport system membrane associated component RALTA_A0887 918488 - 919138 + | putative glycine betaine/carnitine/choline transport system inner membrane component RALTA_A0888 919135 - 920301 + | putative glycine betaine/carnitine/choline transporter, ATP-binding component RALTA_A0889 920356 - 920730 + | conserved hypothetical protein, similar to Plant MuDR transposase TERM 755 920735 - 920763 + T 100 -26.1 -3.81951 | opp_overlap 920735 ACGCCGGATAAAAAA CGGCCCGCACCAG TCG CTGGTGCGGGCCG TTTCCTGATCTGGCG TERM 756 920763 - 920735 - T 100 -26.1 -5.24531 | opp_overlap 920735 ACGCCGGATAAAAAA CGGCCCGCACCAG TCG CTGGTGCGGGCCG TTTCCTGATCTGGCG RALTA_A0890 921090 - 920860 - | putative prophage regulatory protein AlpA TERM 757 920908 - 920929 + g 72 -6.5 -4.36914 | gap 1, opp_overlap 920893 920906, overlap 920909 CCGCTGCGAACCAGC TGCT-GCCGC CGC GCGGCCAGCC TTTTCTGCCAGCCAC RALTA_A0891 921563 - 921087 - | hypothetical protein RALTA_A0892 921979 - 921560 - | hypothetical protein RALTA_A0893 922279 - 922064 - | hypothetical protein RALTA_A0894 922514 - 922272 - | conserved hypothetical protein; putative TRANSMEMBRANE PROTEIN RALTA_A0895 922678 - 922514 - | hypothetical protein RALTA_A0896 925386 - 922675 - | putative DnaG-type primase; topoisomerase-primase (TOprIM) nucleotidyl transferase/hydrolase domain; similar to bacteriophage phiCTX_orf37 ogr 925718 - 925470 - | bacteriophage transcriptional activator; similar to phiCTX_orf34 RALTA_A0898 925909 - 925715 - | hypothetical protein RALTA_A0899 926159 - 925938 - | hypothetical protein RALTA_A0900 926359 - 926156 - | conserved hypothetical protein; putative phage protein RALTA_A0901 926422 - 926889 + | putative TRANSCRIPTIONAL REGULATOR, lambda-like DNA-BINDING REPRESSOR TERM 758 927633 - 927604 - g 83 -12.1 -4.08974 | gap 1 AGTGCATGACAGAAA GCGCCGGAGACCCA TAC TGGGCC-CCTGCGC GCAATCTCGGCGGTG RALTA_A0902 927030 - 927668 + | conserved hypothetical protein; putative phage protein TERM 759 927998 - 928017 + T 100 -9.3 -5.90981 | opp_overlap 927998 ACGCATTCCCGACAA GCCACCA GCGTAA TGGTGGC TTTTTTTTGCTGTGG RALTA_A0903 928402 - 928133 - | hypothetical protein RALTA_A0904 928423 - 928767 + | hypothetical protein RALTA_A0905 928715 - 929080 + | hypothetical protein RALTA_A0906 930041 - 929754 - | hypothetical protein TERM 760 929999 - 929966 - G 72 -13.8 -3.17527 | opp_overlap 929960 929995 929996, overlap 929964 CATCGAGGACGAAGA CGGACGGCCGAGCG TGATCG CGATCGGCCGTCAG GCATCCTGAGTTCGT RALTA_A0907 930397 - 930227 - | hypothetical protein gpD 931725 - 930601 - | bacteriophage P2 tail protein GPD gpU 932144 - 931722 - | bacteriophage P2 tail protein GPU gpT 935046 - 932149 - | bacteriophage P2 tail protein GPT; putative tail length determinator gpFII 936046 - 935537 - | bacteriophage P2 major tail sheath protein GPFII gpFI 937247 - 936075 - | bacteriophage P2 major tail sheath protein GPFI TERM 761 936894 - 936883 - G 73 -7.2 -4.13767 | GGCGTCACGCCAAAA CGCG TCTT CGCG GCCAGCAGGGCCTTC gpG 938274 - 937399 - | phage tail fiber assembly protein gpH 941425 - 938288 - | bacteriophage large tail fiber protein TERM 762 940803 - 940839 + g 77 -10.9 -3.86311 | gap 2, opp_overlap 940801 GTGCGCGACGAGAGG CCGGC-CGG-CGTGACG GACCG CGTTGCGTCCGTGCCGG TTTGGGTTTCGCTGT TERM 763 941073 - 941102 + g 79 -15 -3.30124 | opp_overlap 941070 GTCAGCAGGATATCG GTCGCCAGCAGC ATCATC GCTGCCGGCGAC TTCTCCACGATGGGC gpI 941971 - 941429 - | bacteriophage P2 Baseplate assembly protein GPI gpJ 942872 - 941964 - | bacteriophage P2 Baseplate assembly protein GPJ gpW 943228 - 942869 - | bacteriophage P2 Baseplate assembly protein GPW gpV 943860 - 943225 - | bacteriophage P2 Baseplate assembly protein GPV TERM 764 943804 - 943785 - G 72 -13.6 -3.14132 | opp_overlap 943776 943775 GGGTGCCGGTATCAA CCTCGGCA ACAG TGCCGAGG CGGATCAGATTCTCG TERM 765 943851 - 943897 + g 70 -12.4 -3.32844 | gap 3, overlap 943853 CGGTGGTGGAGTCCA TACCCGCCAGCGTG-CC-GTGCG CGCG CGAACCGGTCACGC-GGCGGGTG TTGTGAGATCCGGCC gpS 944374 - 943928 - | bacteriophage P2 Tail completion protein GPS TERM 766 944185 - 944138 - G 73 -9.6 -3.87815 | gap 1, overlap 944139 CTCCATCTTGAGAAA GCGGGTAGTGCGCAGGCGCGCGA ACA TCGCGCGGC-GCACGCGCCCCGG CCTTAGCCGCAGCTG gpR 944811 - 944371 - | bacteriophage P2 Tail completion protein GPR RALTA_A0922 945320 - 944808 - | putative phage related protein; putative exported protein RALTA_A0923 946123 - 945317 - | putative lytic enzyme, similar to phage phiCTX_orf11 RALTA_A0924 946439 - 946101 - | putative PHAGE-RELATED TRANSMEMBRANE PROTEIN, similar to phiCTX_orf10; putative holin RALTA_A0925 946825 - 946436 - | putative PHAGE-RELATED TRANSMEMBRANE PROTEIN; putative holin gpX 947044 - 946841 - | bacteriophage P2 tail protein GPX gpL 947553 - 947044 - | bacteriophage P2 GPL capsid protein; Head completion/stabilization protein TERM 767 947624 - 947668 + r 84 -13.5 -3.7732 | gap 1, overlap 947626 947629 CGGGGTCACGCTCGG TGTCAGCTGCGGCCGTCGCC CTCCTT GGCGCCGGCTGCTGCTG-CG TTCTTGATCTCGCGC TERM 768 947626 - 947667 + r 77 -15 -2.86071 | overlap 947624 947629 GGGTCACGCTCGGTG TCAGCTGCGGCCGTCGCC CTCCTT GGCGCCGGCTGCTGCTGC GTTCTTGATCTCGCG TERM 769 947629 - 947664 + r 77 -15.3 -2.68142 | overlap 947626 947624 TCACGCTCGGTGTCA GCTGCGGCCGTCGCC CTCCTT GGCGCCGGCTGCTGC TGCGTTCTTGATCTC gpM 948348 - 947626 - | bacteriophage P2 DNA packaging protein, Terminase, endonuclease subunit gpN 949370 - 948345 - | bacteriophage P2 GPN capsid proteins Precursor, Contains Minor capsid protein H1, Minor capsid protein H2, Major capsid protein N* TERM 770 949434 - 949478 + r 70 -10.6 -3.58208 | gap 2, overlap 949430 949473 GCAGTCGGTTTCGAT GAC-GCTGCCGTCG-CCGCCGG TGG CAGGCGGGCGGCGGCTGAAGTC TTCCTTCTTCTCCAG gpO 950249 - 949416 - | bacteriophage P2 GPO capsid protein; Presumed capsid scaffolding protein TERM 771 950476 - 950446 - g 70 -8.3 -3.91897 | opp_overlap 950451 950471 CGTTCGATCCAGAAA TGGAGCCGCG-GCGC ATC GCGCGCGCG-CTCTA CTGGCAGGGCTATCG gpP 950400 - 952181 + | bacteriophage P2 GPP capsid protein; Terminase, ATPase subunit TERM 772 953033 - 952999 - g 89 -7.7 -4.87626 | opp_overlap 953018, overlap 953018 953019 CTGGAACATCAAAAA CGTGACGCGCGACGA CCAAC TGGCCGCGCACCGCG TGCCGCCCCAGTTGA gpQ 952178 - 953218 + | bacteriophage P2 GPQ capsid protein; Presumed portal vertex protein RALTA_A0933 953560 - 953264 - | hypothetical protein RALTA_A0934 953861 - 953667 - | hypothetical protein; putative exported protein RALTA_ACDS953921R 954154 - 953921 - | hypothetical protein TERM 773 954495 - 954525 + r 100 -7.6 -5.64421 | gap 1, opp_overlap 954495 TTTCTTTTCCCAGAA GCGC-CTTGCGAG CTGCAA CTCACAAGAGCGC TTTTTTATTTCCCCT RALTA_A0936 955057 - 954530 - | putative Zinc-dependent metallopeptidase TERM 774 954595 - 954583 - G 82 -9.1 -4.42062 | CAGCGTCCAAAGAAA CGCCA CAC TGGCG CGCTACATCAATTGC RALTA_A0937 955431 - 955057 - | putative transcriptional regulator, XRE family, bacteriophage lambda repressor C1 like TERM 775 955711 - 955730 + H 90 -8.5 -4.84359 | overlap 955686 GAGACCCCGCCTCAC CCGCCCG CTTCAT CGGGTGG TTTTTATGCGGGTGC RALTA_A0938 956285 - 956587 + | hypothetical protein TERM 776 956870 - 956885 + G 72 -3.2 -4.62069 | overlap 956861 GAGCTTGCCGGGCCC CCTCGG CTCA TTGAGG TTTTTCGGGTGAACG RALTA_A0939 956669 - 957052 + | hypothetical protein TERM 777 957468 - 957492 + G 100 -14.3 -4.54727 | GCGGTAGCCGTACTG GGCCCTGGC CTATGCA GCCAGGGCC TTTTCATTTGGCGGC RALTA_ACDS957195D 957195 - 957605 + | hypothetical protein TERM 778 957944 - 957961 + T 100 -12.7 -5.75342 | TCACATCCCGTTGAA CCCTCGG TCCC CCGAGGG TTTTTTTTGGGGCGG RALTA_A0942 959553 - 958297 - | prophage integrase RALTA_A0943 960080 - 960598 + | putative OUTER MEMBRANE LIPOPROTEIN TRANSMEMBRANE TERM 779 960628 - 960647 + T 100 -15 -5.95166 | opp_overlap 960628 TTGCCAGATGCAAAA GGCCACGC GCTT GCGTGGCC TTTTTTTTCGTTGCC TERM 780 960647 - 960628 - T 100 -15 -4.2349 | opp_overlap 960628 TTGCCAGATGCAAAA GGCCACGC GCTT GCGTGGCC TTTTTTTTCGTTGCC yggW 961909 - 960677 - | Oxygen-independent coproporphyrinogen III oxidase(Coproporphyrinogenase)(Coprogen oxidase) rdgB 962523 - 961906 - | Nucleoside-triphosphate diphosphatase rph 963258 - 962539 - | RNase PH RALTA_A0947 964276 - 963362 - | putative protein phophatase TERM 781 963838 - 963851 + g 76 -8.1 -4.28254 | TCGGCAGCACGCGTT CCTGC TGCA GCAGG TTTTCGATCTTGGAG TERM 782 964309 - 964341 + r 95 -9.8 -4.55491 | gap 1 CTTGTGGTTCGATGG CCCGGCCGCCCGC GGGAAGAA GCAGG-GGCCGGG TTTTGTGATTCAGTC RALTA_A0948 965403 - 964351 - | putative serine/threonine protein kinase TERM 783 964452 - 964499 + g 87 -22.8 -2.78715 | gap 1, overlap 964456 964460 CGGCCGGGGCGGCAG CCGGCGC-CTGGGTGGGCGGGCA CAG TGCCTGCTCGCCCAGCGCGTTGG TCTGCTCGCGCAGTT TERM 784 964456 - 964495 + g 95 -20.8 -3.29471 | gap 1, overlap 964452 964460 CGGGGCGGCAGCCGG CGC-CTGGGTGGGCGGGCA CAG TGCCTGCTCGCCCAGCGCG TTGGTCTGCTCGCGC TERM 785 965583 - 965530 - H 74 -12.2 -3.53091 | gap 2, overlap 965531 AGGGCGCCCCCCAAA GGCCTGGCCGCGCGCGGGCCGGGCGG GCGT CCGCT-GGCCAGC-CGCGGCCCCGCT TGCGGGTAGCGGCGC TERM 786 965582 - 965531 - H 78 -15.7 -2.71712 | gap 2, overlap 965530 GGGCGCCCCCCAAAG GCCTGGCCGCGCGCGGGCCGGGCGG GCGT CCGCT-GGCCAGC-CGCGGCCCCGC TTGCGGGTAGCGGCG RALTA_A0949 965617 - 966552 + | conserved hypothetical protein; Uncharacterized stress-induced protein gmk 966584 - 967246 + | guanylate kinase rpoZ 967352 - 967555 + | DNA-DIRECTED RNA POLYMERASE (OMEGA CHAIN) PROTEIN TERM 787 968291 - 968271 - g 75 -5.3 -4.57073 | GAGCTGGCCGAAAAA TTCGGCCCC AAG GTCGCCGAA CTGGTCGATGGACTG TERM 788 968662 - 968607 - g 78 -6 -4.58395 | gap 1 GCCACGCTCGAAAAA GCCGTCAAGGCCGCGCGCGGCAACC GGCGCGA GGTGGTCAAGCGCATCCTCGA-GGC CGCGCAGAAGGCGCT spoT 967638 - 970175 + | bifunctional: (p)ppGpp synthetase II; guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase; putative precursor greB 970825 - 970262 - | TRANSCRIPTION ELONGATION FACTOR (TRANSCRIPT CLEAVAGE FACTOR) TERM 789 971102 - 971071 - H 95 -16 -3.92869 | opp_overlap 971076, overlap 971076 CCACCTATGCAGAAA GAAAAGGGCTTCCG GAAA CGGAAGCCCTTTTT TATTGTCGCTCCGTT TERM 790 971097 - 971076 - H 100 -15.9 -5.0065 | opp_overlap 971076, overlap 971071 TATGCAGAAAGAAAA GGGCTTCCG GAAA CGGAAGCCC TTTTTTATTGTCGCT TERM 791 971076 - 971097 + H 100 -15.9 -5.56673 | opp_overlap 971071 971076 TATGCAGAAAGAAAA GGGCTTCCG GAAA CGGAAGCCC TTTTTTATTGTCGCT RALTA_A0954 971237 - 971497 + | hypothetical protein RALTA_A0955 972113 - 971832 - | hypothetical protein RALTA_A0956 972612 - 972304 - | hypothetical protein TERM 792 972590 - 972571 - G 74 -12.2 -3.54424 | CTTCACCCCTGCAAA CCATGCGT ACTG ACGCATGG CGGACAACAAACGCT TERM 793 972631 - 972663 + r 72 -7.7 -4.15044 | CGCGACTCGGGTTGG TTGGAAGTGCGAATG AGA CTTTCGTACATCCGA TTTGTTCACAGCAAA RALTA_A0957 974216 - 972768 - | putative fused transcriptional regulator aminotransferase, GntR MocR domains RALTA_A0958 974380 - 974823 + | putative Carboxymuconolactone decarboxylase TERM 794 974824 - 974868 + F 73 -12.8 -3.20991 | gap 1, opp_overlap 974826 974827, overlap 974811 974827 CCGCCGGCGCTTTGA AAC-CCGTGCGCCGGCTTGTC GATT GACAAGCCGGCGCGCGCTGCA TTAGCTTCGGTTGCA TERM 795 974865 - 974826 - f 95 -17.8 -3.53012 | opp_overlap 974811 974824 974827, overlap 974827 GCCGGCGCTTTGAAA CCCGTGCGCCGGCTTGTC GATT GACAAGCCGGCGCGCGCT GCATTAGCTTCGGTT TERM 796 974864 - 974827 - f 100 -21.3 -2.71712 | opp_overlap 974811 974824 974827, overlap 974826 CCGGCGCTTTGAAAC CCGTGCGCCGGCTTGTC GATT GACAAGCCGGCGCGCGC TGCATTAGCTTCGGT TERM 797 974827 - 974864 + F 100 -23.5 -2.57192 | opp_overlap 974827 974826, overlap 974811 974824 CCGGCGCTTTGAAAC CCGTGCGCCGGCTTGTC GATT GACAAGCCGGCGCGCGC TGCATTAGCTTCGGT RALTA_A0959 974984 - 975295 + | hypothetical protein TERM 798 975367 - 975380 + F 74 -9.5 -3.91911 | AGCCGGCGCAAGCTG CGGCG CCCC CGCCG TTTCGTTAAAATACG RALTA_A0960 975459 - 976361 + | putative hydroxylase; similar to clavaminate synthase TERM 799 976392 - 976369 - f 72 -12.4 -3.27476 | opp_overlap 976371, overlap 976371 ACCTGTAAGCAGCAA GAGAGCCGGC GCCA GCCGGCTCTT TCGTTTAGCGGACCT TERM 800 976390 - 976371 - f 80 -15 -3.20227 | opp_overlap 976371, overlap 976369 CTGTAAGCAGCAAGA GAGCCGGC GCCA GCCGGCTC TTTCGTTTAGCGGAC TERM 801 976371 - 976390 + F 93 -15 -4.05788 | opp_overlap 976371 976369 CTGTAAGCAGCAAGA GAGCCGGC GCCA GCCGGCTC TTTCGTTTAGCGGAC RALTA_A0961 976536 - 976688 + | hypothetical protein RALTA_A0962 978223 - 976712 - | putative diguanylate cyclase with PAS sensor domain TERM 802 978401 - 978367 - R 83 -14.8 -3.53224 | overlap 978368 GAGGGTTGTTGCAAA TCGGCGCGAGGGCCGG GGA CCGGCCACCGCGGCGG TCAGGCCGCGAGCCG TERM 803 978400 - 978368 - R 86 -18.3 -2.71791 | overlap 978367 AGGGTTGTTGCAAAT CGGCGCGAGGGCCGG GGA CCGGCCACCGCGGCG GTCAGGCCGCGAGCC RALTA_A0963 979841 - 978402 - | putative fused transcriptional regulator aminotransferase, GntR MocR domains TERM 804 980209 - 980255 + G 95 -21.7 -3.35798 | GCGACACCTGGGTCG TGCCTGCGC-GCGGCTGGCTGAC GGT GTCGGCGAGCCGCGGCGC-GGCA TTGTCGGTCACGGCT RALTA_A0964 980016 - 980387 + | hypothetical protein TERM 805 980551 - 980505 - g 77 -17.2 -2.67244 | overlap 980502 980501 CCATACCGAAAGCGA CCTCGACGCCGCCGTGCGCGCC TGT GCCGCACAGATCGGCGTCAAGG GAGACGGCCTGATCG RALTA_A0965 980455 - 982080 + | putative FAD dependent oxidoreductase TERM 806 982149 - 982099 - T 85 -15.4 -3.48276 | gap 2 TGTTGCTGCAGATAA GCCG-CGGCCCCCTGCGCC-GCGG TGCGG CCGCTGGCGAAGCAGGCCGTCAGC AGGTAGCCGCCGGTG RALTA_A0966 983372 - 982077 - | conserved hypothetical protein; putative fad-dependent pyridine nucleotide-disulphide oxidoreductase TERM 807 982737 - 982683 - G 73 -12 -3.53012 | CGGCGCGCCGGCAAA GCGCGCGGCAAAGTCCGCGCTCCATG CCA CGTCGAACCCGCAGTTTGCCGGGCGC AGCGGCGCGATCTCG RALTA_A0967 983463 - 984074 + | conserved hypothetical protein, DUF1415 RALTA_A0968 984914 - 984075 - | conserved hypothetical protein; putative S-adenosyl-L-methionine-dependent methyltransferase TERM 808 985084 - 985056 - H 76 -10.2 -3.82378 | gap 1, overlap 985059 985061 ATGCATCGATAACAA GCAGAGCGCCGGC ACCC GCCGTCGCCC-GC CAGACGATTCAGGGG TERM 809 986526 - 986492 - g 79 -10.8 -4.08216 | opp_overlap 986476 986493, overlap 986493 CGACTTGCGCGAAAA GGCCCGCGCGAC-GCT GTTCA AGCTGTCGCGCGA-CC TGTTCGAGCTGGACG RALTA_A0969 985104 - 986717 + | conserved hypothetical protein, DUF342 TERM 810 986892 - 986923 + T 100 -14.5 -4.13767 | opp_overlap 986892, overlap 986898 TGGCACTTGAATGAA CGGGAAGGCCAGC CATCGC GCTGGCCTTTCTG TTTTCAGGTCGGCCA TERM 811 986898 - 986917 + T 95 -10.7 -4.45771 | opp_overlap 986892, overlap 986892 TTGAATGAACGGGAA GGCCAGC CATCGC GCTGGCC TTTCTGTTTTCAGGT RALTA_A0970 988134 - 986977 - | putative Metallo-dependent phosphatase; putative capsule biosynthesis protein RALTA_A0971 988314 - 989702 + | FAD linked oxygen oxidoreductase; putative (R)-6-hydroxynicotine oxidase RALTA_A0972 989817 - 990734 + | conserved hypothetical protein; putative polyphosphate kinase TERM 812 990835 - 990809 - g 90 -12.2 -4.50058 | TACCTATAATGAAAA CGGCCACCCCGA CAT CCGCAGTGGCCG TGATCGTGGAACTGC RALTA_A0973 990802 - 991068 + | hypothetical protein; putative membrane protein TERM 813 991080 - 991053 - f 83 -7.6 -4.63486 | gap 1, opp_overlap 991067 991071, overlap 991054 ACGCGCGCAACAAAA TGCCCGGAGAGCG TGA CGCTG-CCGGGCG CCTCAGCCCATGGCA TERM 814 991468 - 991479 + G 93 -5.8 -5.30616 | TGCTGAGCGGCGCGC TGGC CGTT GCCA TTTTTGTTTACCTCC kdpF 991437 - 991526 + | P-type ATPase, high-affinity potassium transport system, F chain, small hydrophobic subunit TERM 815 991576 - 991587 + G 76 -7.2 -4.3739 | overlap 991581 TCTCGCCATCCTGCT GGCG TGCG CGCC TTTTCTGGGCCGCTA kdpA 991526 - 993343 + | P-type ATPase, high-affinity potassium transport system, A chain TERM 816 994076 - 994042 - g 78 -12.2 -3.72576 | gap 1, opp_overlap 994058 994059, overlap 994043 CTTCGGTCGACGAAA GCGCCATCACCGGCG AATCGG CGCCGGTGATC-CGC GAGTCCGGCGGCGAC TERM 817 995074 - 995039 - g 74 -14 -3.30441 | gap 1, opp_overlap 995028 GATCACCGGCGACAA CCGGCTGACCGCGGC TTCGATC GCCGCGGA-AGCCGG CGTCGACGACTTCCT kdpB 993447 - 995666 + | P-type ATPase, high-affinity potassium transport system, B chain kdpC 995694 - 996317 + | P-type ATPase, high-affinity potassium transport system, C chain TERM 818 997708 - 997740 + G 71 -11.2 -3.58905 | gap 1, opp_overlap 997705 CGAAGCACCAGAGGC TCC-AACGCCGGGCG AGGG CGCCCGGCGCAAGGA TTATCTGTGGGCCAT kdpD 996410 - 999268 + | sensor histidine kinase in two-component regulatory system wtih KdpE, regulation of potassium translocation kdpE 999301 - 999996 + | response regulator (OmpR family) in two-component regulatory system with KdpD, regulation of potassium translocation RALTA_A0981 1000129 - 1000926 + | conserved hypothetical protein; putative exported PROTEIN TERM 819 1001042 - 1001022 - T 95 -10.4 -4.56978 | opp_overlap 1001018 CCCGGAAACAACAAA GCCCAACC GGGCT GGCTGGGC TAAGTGCTTGATTCA fbp 1002274 - 1001258 - | fructose-bisphosphatase pepN 1005127 - 1002356 - | aminopeptidase N, cysteinylglycinase (putative precursor) RALTA_A0985 1005273 - 1005977 + | conserved hypothetical protein; putative transmembrane protein maeB 1006317 - 1008638 + | NAD(P)-dependent malic enzyme;bifunctional: malic oxidoreductase (N-terminal); phosphotransacetylase (C-terminal) TERM 820 1008668 - 1008686 + T 100 -16 -5.47159 | opp_overlap 1008668 TCCGCCATGCAAAAA GCCGGGTC GAC GACCCGGC TTTTTGTTTGTTGCC TERM 821 1008686 - 1008668 - T 100 -16 -4.65895 | opp_overlap 1008668 TCCGCCATGCAAAAA GCCGGGTC GAC GACCCGGC TTTTTGTTTGTTGCC RALTA_A0987 1008987 - 1008742 - | hypothetical protein TERM 822 1009196 - 1009179 - R 100 -14.1 -5.40072 | overlap 1009191 CGTGCCGTAAAAAAA GCCCGCC GAAA GGCGGGC TCCGGTGCTGCCGGT RALTA_A0988 1010294 - 1009227 - | putative outer membrane porin TERM 823 1010442 - 1010466 + r 93 -3.5 -5.60993 | CGGCATCGGGGTACA GCGTTTTTTGT TAT ACAGGTGACGC TTTTTTTCTCAGGCG RALTA_A0989 1010993 - 1010475 - | conserved hypothetical protein, COG3195 RALTA_A0990 1011940 - 1010990 - | putative Polysaccharide deacetylase; xylanase/chitin deacetylase TERM 824 1011301 - 1011320 + g 81 -3.4 -4.82901 | overlap 1011302 TCGAGTCCAGCGTGT ACGGCACC ACCA GGTGCGGC TTTTTCTCGCCACCG RALTA_A0991 1013541 - 1012096 - | putative Xanthine/uracil permease (NCS2 family) RALTA_A0992 1014440 - 1013673 - | putative TRANSCRIPTIONal REGULATOR, GntR family pucM 1014739 - 1015092 + | 5-hydroxyisourate hydrolase (HIUHase) RALTA_A0994 1015124 - 1016329 + | conserved hypothetical protein, DUF989; putative TRANSMEMBRANE PROTEIN TERM 825 1016382 - 1016351 - T 77 -14.5 -2.92613 | gap 1, opp_overlap 1016331, overlap 1016348 CCTGAGCTGAAAGCA TCA-GGGCCGGCTC TTCCC GAGCCGGCCCGCGA CATCCGAGCATCGGT TERM 826 1016461 - 1016477 + T 100 -10.8 -5.81412 | CGGCGAGGGTTTGAA CGGGGC CTTGT GCCCCG TTTTTTTTGCCTGGC RALTA_A0995 1017071 - 1016496 - | conserved hypothetical protein, COG2119; putative TRANSMEMBRANE PROTEIN TERM 827 1016756 - 1016739 - G 89 -2.6 -5.27335 | TTCGGCAAAGAAAAA GGCAAC GAGCGT GGTGCC GAGGATGCCGATGAA TERM 828 1017373 - 1017338 - R 100 -19.8 -3.40899 | gap 1, opp_overlap 1017370, overlap 1017325 AAGCGGCGATTATAA CCGCCG-CGGCGGTGGA TCG TCCACCACCGCCAGCGG CCTGCCAGCCGGTCA RALTA_A0996 1018549 - 1017386 - | putative Fatty acid desaturase, family 2 guaD 1020062 - 1018740 - | guanine deaminase TERM 829 1020077 - 1020120 + r 71 -13.1 -3.05844 | gap 2, overlap 1020079 TGGCTTGTCTCTCGT GGCCGGCCCG-CGC-GGCACC GCAT GGTGCAAGCGGCAGGCCGGTC TATTGGCATGCGCCG add 1021194 - 1020139 - | ADENOSINE DEAMINASE TERM 830 1020656 - 1020666 + g 75 -4.6 -4.57073 | opp_overlap 1020639, overlap 1020637 1020632 CGCGCGAATTTCTCG GGCG GGT TGCC TTTTTCCGACGAATC xdhC2 1022239 - 1021250 - | XANTHINE DEHYDROGENASE accessory component TERM 831 1021944 - 1021887 - G 82 -14.9 -3.53012 | gap 1 CGCTGTGCGGCGAAA TTGCGCTCGACCGCATCGAGCCAGGCCA GGT CGGCCTGGCCCAGCACT-TCGAACGCAA GCTGCACCACGCCGC xdhB2 1024752 - 1022392 - | XANTHINE DEHYDROGENASE (SUBUNIT B) OXIDOREDUCTASE PROTEIN TERM 832 1023175 - 1023196 + g 70 -12.3 -3.25223 | overlap 1023171 GCCGGTCGATGCCGC GGTGGCCGA GGTA TTGGCCACC TTGCTGGTATCCGTC TERM 833 1024736 - 1024757 + g 79 -2.2 -4.84033 | TCGAGCAGGAAGGGT TCGGTTTG CTTGTT CATGCCGA TTTTCCTTTTTCTCT xdhA2 1026274 - 1024772 - | XANTHINE DEHYDROGENASE (SUBUNIT A) (Purine hydroxylase I) TERM 834 1026682 - 1026670 - g 83 -9.1 -4.56597 | GGTGCGGGGCAAAAA CGGCA TGG TGCCG ACCGAGCGCGGCCGC RALTA_A1002 1026494 - 1027441 + | putative TRANSCRIPTIONal REGULATOR, LysR family RALTA_A1003 1028290 - 1027463 - | putative ABC-type tungstate transport system, periplasmic binding component TERM 835 1029291 - 1029310 + G 81 -10 -4.38712 | gap 1, opp_overlap 1029290 GGGCTGCGCATGAAC GCCGAGGCC CAC GGCCT-GGC TTTTGTGCCGCTGAC RALTA_A1004 1028430 - 1029527 + | putative transcriptional regulator, LysR family TERM 836 1029541 - 1029561 + F 78 -14.7 -3.06492 | GAGCCACGGCGGTCC CGGACCGGT CGG GCCGGTCCG TATTACACTCCCTGC TERM 837 1030064 - 1030088 + G 78 -12.1 -3.72324 | overlap 1030083 CACTGAGGACCTGAC CGCCACCGGCA GCC TGCTGCTGGCG TTCTTCGTGCCGGTG RALTA_A1005 1029630 - 1030229 + | conserved hypothetical protein, putative TRANSMEMBRANE PROTEIN TERM 838 1031203 - 1031259 + G 72 -15.2 -2.87132 | gap 2, overlap 1031197 CGCTTCCTGTCGCTG GTGGCGGTGCTGTCGTCGATGATCGCCG CGG TGGCGATCG-CGATGTCGGCGC-GCCGC TATATGCAGCGCCAC RALTA_A1006 1030312 - 1032927 + | putative ABC-type transporter involved in lysophospholipase L1 biosynthesis, permease component RALTA_A1007 1032963 - 1033379 + | putative oxygen-binding heme protein RALTA_A1008 1033423 - 1034019 + | conserved hypothetical protein, DUF924 RALTA_A1009 1034623 - 1034039 - | hypothetical protein RALTA_A1010 1035321 - 1034620 - | putative TRANSCRIPTIONal REGULATOR, TetR family dgkA 1035867 - 1035442 - | DIACYLGLYCEROL KINASE TRANSMEMBRANE PROTEIN RALTA_A1012 1036993 - 1035854 - | putative glycosyl transferase RALTA_A1013 1038055 - 1037078 - | conserved hypothetical protein, COG2908; putative exported protein RALTA_A1014 1039154 - 1038174 - | putative LIPASE/acetyltransferase TRANSMEMBRANE PROTEIN TERM 839 1038394 - 1038350 - G 77 -17.9 -2.66787 | gap 2, opp_overlap 1038352 1038356 1038389 1038390 TGAAGATCGAGATCA TGCGCGCGC--GCAGCCGCGG TGTTT CGGCGGCCGCCAGCGCGCGCA GCCAGGGGCTGCCGC TERM 840 1038526 - 1038583 + g 82 -15.4 -3.53444 | gap 2, opp_overlap 1038566, overlap 1038508 CCTGCCAGCCGCAGC GCGGCGCGCGCGGCGAGGCCGCCCATGC TGTG GCA-GAGCAGCAGCGGCGCGCGC-CCGC TTTCGGCGCGGATGC RALTA_A1015 1039693 - 1039151 - | conserved hypothetical protein, RDD domain; putative TRANSMEMBRANE PROTEIN TERM 841 1039371 - 1039391 + g 75 -9.6 -4.07885 | GCCGCCTGCGGCCAA CGCGGCGG CACGC CCGCGGCG TTTTCGACGCGCATG RALTA_A1016 1040622 - 1039813 - | putative lipoprotein TERM 842 1039981 - 1040039 + g 76 -7.5 -4.30014 | opp_overlap 1040014, overlap 1039981 1040033 TGCCGCGGCTGCGGG CT-GCGCCGCGCCATCGCTGGCCG-CCGT ACCAG ACGGGTGGGCAGCG-TGGCCCG-CGCCGG TTTTGCGTTCATGGC TERM 843 1040119 - 1040149 + g 93 -7.6 -5.2291 | gap 3 GCTGACGGCGCCGGG GC-GG-CGCGGCACG TGGT CG-GCCGCGGCCAGC TTTTTCTTCTGCTCT TERM 844 1040588 - 1040535 - G 70 -15.7 -2.70932 | CCGGGGCGGGAAGCA GGCCCCAGCAGGCGGCCGCGCCGGC GCCG GCCAGCAGGGCGGCCAGCCGGCGGC GCAGGGCGTCGGGGC RALTA_A1017 1041055 - 1040624 - | conserved hypothetical protein; putative transmembrane protein TERM 845 1041012 - 1041033 + g 71 -2.9 -4.65032 | overlap 1041014 GCCGCGCGAACCTCA TGCGCAAAC CGGC GTTCGCGGA TTTCTTTGTCGTTTC RALTA_A1018 1041621 - 1041052 - | RNA POLYMERASE SIGMA FACTOR TERM 846 1041463 - 1041483 + g 75 -4.5 -4.57341 | opp_overlap 1041450, overlap 1041449 1041448 1041465 CAGCGGCGCGAGCTC CGCGGCGCC CTT GTCGCCGTA TTTTTCAGCCAGCTT TERM 847 1041465 - 1041481 + g 70 -9.3 -3.90048 | opp_overlap 1041450, overlap 1041449 1041448 1041463 GCGGCGCGAGCTCCG CGGCGCC CTT GTCGCCG TATTTTTCAGCCAGC ilvI1 1042000 - 1043763 + | acetolactate synthase III, valine-sensitive, large subunit ilvH 1043764 - 1044255 + | acetolactate synthase III, valine-sensitive, small subunit TERM 848 1044899 - 1044844 - g 81 -13 -3.84406 | CGTGCACCAGAACAA GTCCGGCGCCGCCCGCGACATCGCCC TGTC GTACGCCACCGCGAACGGCGGCGGCC GTGCCGGCATCATCG ilvC 1044377 - 1045393 + | KETOL-ACID REDUCTOISOMERASE TERM 849 1045487 - 1045503 + F 84 -2.2 -5.24416 | CATCGGAAGGGGATT GCCG GGACCTGAA CGGC TTTTTGTTATCCTTG TERM 850 1046178 - 1046153 - g 79 -15.5 -3.25823 | gap 1, overlap 1046166 CCTTTGCTACACCAA GGCCG-GCGAGA ACC TCTCGCGCGGCC AGCGCTACGGCTTTA RALTA_A1022 1045659 - 1046309 + | Phosphatidylserine decarboxylase pssA 1046335 - 1047216 + | CDP-diacylglycerol--serine O-phosphatidyltransferase TERM 851 1047226 - 1047241 + F 70 -11.8 -3.21912 | opp_overlap 1047219 1047218, overlap 1047222 GAATAAATGTCGGAA GGGCGC TCAG GCGCCC TTCATGCCTTGCGGA RALTA_A1024 1047335 - 1047838 + | conserved hypothetical protein, Peptidoglycan-binding LysM domain TERM 852 1048037 - 1048067 + F 100 -19.7 -4.27316 | opp_overlap 1048030 1048029 CAAGGAATTTTCCAA CGCCCCGGCCTGC TCCAT GCACGCCGGGGCG TTTTGCATTCCACAG leuA1 1048166 - 1049707 + | 2-isopropylmalate synthase TERM 853 1049763 - 1049793 + T 100 -24.8 -4.72272 | opp_overlap 1049755 GAACGTACGGACCAG GCCCGCCATTCCCG ACC CGGGGATGGCGGGC TTTTTCATGGGCACG RALTA_A1026 1050362 - 1049832 - | putative TRANSMEMBRANE LIPOPROTEIN TERM 854 1050510 - 1050483 - H 76 -9.7 -4.08767 | opp_overlap 1050483 1050481 CGGATCTCCGTAAAA CCGGCGGGGAC GGGCCG GGCCCCGCGGG TATTTGCCCGTAACG RALTA_A1027 1050566 - 1051822 + | putative branched amino acid ABC TRANSPORTER, periplasmic component rpsO 1051983 - 1052252 + | 30S ribosomal subunit protein S15 TERM 855 1052311 - 1052338 + G 90 -12.8 -4.39571 | gap 1 CGCGTGAGGCCTCGA TGCCTGCTTCAGC ACT GCTG-GGCAGGCA TTTTGCATTTCTGGC RALTA_A1029 1052283 - 1052468 + | hypothetical protein TERM 856 1052515 - 1052573 + F 75 -14.1 -3.05384 | gap 2 GCAAGGAAACAGGGC -T-TTGTGTCATTCCAGCACGGCATCGGC AAG GCTGGTGCCGCGCTGGAATGGCATAGCAC TTCCCTGCGACCGCG TERM 857 1053550 - 1053516 - g 70 -12 -3.38326 | CAGAAGCTGAAGGAA GTGTCGGCCAACGTGG CCG CCGCGCTGGCCGAAGC CGGCGTCGAAGCCGA pnp 1052694 - 1054865 + | polynucleotide phosphorylase/polyadenylase TERM 858 1054941 - 1054919 - f 86 -13.4 -3.96148 | opp_overlap 1054920, overlap 1054920 CGGCGCCACCAGAAA GCGGCTGGAC CAT GTCCAGCCGT TTTTTTGTTTACACT TERM 859 1054940 - 1054920 - f 88 -16.9 -2.97475 | opp_overlap 1054920, overlap 1054919 GGCGCCACCAGAAAG CGGCTGGAC CAT GTCCAGCCG TTTTTTTGTTTACAC TERM 860 1054920 - 1054940 + F 100 -16.9 -5.95539 | opp_overlap 1054920 1054919 GGCGCCACCAGAAAG CGGCTGGAC CAT GTCCAGCCG TTTTTTTGTTTACAC RALTA_A1031 1055018 - 1056022 + | putative NADPH QUINONE OXIDOREDUCTASE tpiA 1056137 - 1056880 + | triosephosphate isomerase secG 1056932 - 1057306 + | preprotein translocase membrane subunit nuoA 1057745 - 1058104 + | NADH:ubiquinone oxidoreductase complex I, membrane subunit A nuoB 1058111 - 1058593 + | NADH:ubiquinone oxidoreductase complex I, chain B nuoC 1058595 - 1059194 + | NADH:ubiquinone oxidoreductase complex I, chain C nuoD 1059204 - 1060457 + | NADH:ubiquinone oxidoreductase complex I, chain D TERM 861 1060602 - 1060625 + F 73 -6.6 -4.26903 | gap 1, opp_overlap 1060602, overlap 1060593 AAACCTGCGGAGAGA CGCCCGGTGGC GCT GTCTCCGG-CG TTTTACTGCAATGAC nuoE 1060636 - 1061139 + | NADH:ubiquinone oxidoreductase complex I, chain E TERM 862 1061580 - 1061559 - g 73 -13.1 -3.45909 | overlap 1061554 1061552 1061557 1061570 GGAACGAATACAAGA TCTTCGAGG AAGC CCTCGAAGA GGCGCGCGCGGCCGG nuoF 1061141 - 1062436 + | NADH:ubiquinone oxidoreductase complex I, chain F nuoG 1062449 - 1064812 + | NADH:ubiquinone oxidoreductase complex I, chain G nuoH 1064834 - 1065898 + | NADH:ubiquinone oxidoreductase complex I, chain H nuoI 1065963 - 1066454 + | NADH:ubiquinone oxidoreductase complex I, chain I TERM 863 1066599 - 1066616 + G 70 -12.7 -3.28712 | opp_overlap 1066585 ATGCCGCAGGAGCGG GCCACCC GAGG GGGTGGC TTGTGCCGGGCGGCC nuoJ 1066576 - 1067298 + | NADH:ubiquinone oxidoreductase complex I, chain J TERM 864 1067483 - 1067496 + G 77 -3.8 -4.78029 | GCATTACCTGGGCGA CCTG GCAGGA CAGG TTTTCGTTTTCTTCA nuoK 1067316 - 1067621 + | NADH:ubiquinone oxidoreductase complex I, chain K nuoL 1067680 - 1069767 + | NADH:ubiquinone oxidoreductase complex I, chain L nuoM 1069795 - 1071261 + | NADH:ubiquinone oxidoreductase complex I, chain M nuoN 1071280 - 1072755 + | NADH:ubiquinone oxidoreductase complex I, chain N RALTA_A1048 1072769 - 1073077 + | putative transmembrane lipoprotein RALTA_A1049 1073122 - 1073775 + | putative ADP-ribose diphosphatase TERM 865 1073838 - 1073810 - f 80 -14.7 -3.16742 | opp_overlap 1073802 1073801 CGCAAGCGTTACGAA CGGTCGTTCTAAA AAA TTTAGCACGACCG TTCACAAAATTTGGA RALTA_A1050 1073892 - 1074338 + | conserved hypothetical protein, DUF1178 TERM 866 1074635 - 1074592 - g 70 -15.3 -2.71712 | gap 1, opp_overlap 1074626, overlap 1074591 TGCTCGCCGGCAAAG GCTGGTCGGCGCCGCACTGG CCGGT CCAGTACGGCGGC-ACCGGC TGGAACGCCACCCAG RALTA_A1051 1074432 - 1075634 + | putative ACYL-COA DEHYDROGENASE TERM 867 1075801 - 1075835 + G 75 -9.9 -4.07568 | gap 1 CTGGCCGAACTGGGC CTGACC-GCGCTGCCG GTGC CGGAAGCGCAGGGCGG TTTTGCCGGCAAGGC RALTA_A1052 1075648 - 1076766 + | putative ACYL-COA DEHYDROGENASE TERM 868 1076787 - 1076808 + F 100 -8 -5.95539 | gap 1, opp_overlap 1076787 CCAGTCCAGTCAAAA CCGCG-CTG CAGTC CAGGCGCGG TTTTTTTCTTTGGGC TERM 869 1076808 - 1076787 - f 72 -8 -4.1899 | gap 1, opp_overlap 1076787 CCAGTCCAGTCAAAA CCGCG-CTG CAGTC CAGGCGCGG TTTTTTTCTTTGGGC RALTA_A1053 1076923 - 1077366 + | putative dehydratase, MaoC-like domain TERM 870 1077577 - 1077557 - g 75 -4.6 -4.57569 | gap 1, overlap 1077558 GGAGCGCGCGAAAAA GGAGTCGCC CTAT GGCGGC-CC GATCGCGCACGGCTT nodN-like 1077399 - 1077875 + | nodN-like protein, putative enzyme, MaoC-like domain TERM 871 1077937 - 1077953 + F 95 -15.1 -4.0056 | GTCGCACCCCTGAGG GCCGCGC AAA GCGCGGC TTTCTGCATATTTAT cyoA1 1078445 - 1079443 + | cytochrome o ubiquinol oxidase, subunit II cyoB1 1079458 - 1081431 + | cytochrome o ubiquinol oxidase, subunit I cyoC1 1081437 - 1082081 + | cytochrome o ubiquinol oxidase, subunit III cyoD1 1082081 - 1082449 + | cytochrome o ubiquinol oxidase, subunit IV TERM 872 1082491 - 1082474 - T 93 -14.1 -4.13767 | opp_overlap 1082474 TCCTGCATCGGAAAA GGGGCCC CGCG GGGCCCC TTTCTCATTGCTGCA TERM 873 1082474 - 1082491 + T 90 -14.1 -4.08144 | opp_overlap 1082474 TCCTGCATCGGAAAA GGGGCCC CGCG GGGCCCC TTTCTCATTGCTGCA ggt2 1084567 - 1082516 - | GAMMA-GLUTAMYLTRANSPEPTIDASE TERM 874 1084766 - 1084729 - H 71 -11.1 -3.53343 | overlap 1084730 AAGCGTTCGCTTAAA CCGTGCGCGCCGCCGTG CCGG CACGGCAGCGGGCGCCA CGCTGGCGCAAGCTG RALTA_A1060 1085030 - 1086271 + | putative Branched-chain amino acid ABC transporter, periplasmic amino acid-binding component (LivK family) TERM 875 1087005 - 1086989 - g 73 -7.9 -4.15106 | overlap 1086990 1086998 CAGCAACCCGCAAAA CCGCCAG AAG CTGGCGC CGCTGGTGGAGCGCG RALTA_A1061 1086369 - 1088012 + | putative Branched-chain amino acid ABC TRANSPORTER, membrane component TERM 876 1088653 - 1088683 + G 77 -14.7 -3.22223 | gap 1, overlap 1088656 CATCGCCGGCTTTGC CATCGCCGCGCCGC AGAC GCG-CGCGGCGCTG TTCGTGCTGACCTTC RALTA_A1062 1088012 - 1089220 + | putative Branched-chain amino acid ABC TRANSPORTER, membrane component RALTA_A1063 1089217 - 1090065 + | putative Branched-chain amino acid ABC TRANSPORTER, ATP-BINDING component RALTA_A1064 1090068 - 1090760 + | putative branched-chain amino acid transporter, ATPase component ureD 1090871 - 1091740 + | UREASE ACCESSORY PROTEIN ureA 1091780 - 1092082 + | UREASE, GAMMA SUBUNIT ureJ 1092138 - 1092749 + | UREASE ACCESSORY TRANSMEMBRANE PROTEIN ureB 1092761 - 1093066 + | UREASE, BETA SUBUNIT TERM 877 1094645 - 1094606 - g 74 -15 -3.03243 | gap 1, opp_overlap 1094600 ACGGACTGGCCAAGA CCCTTGCCG-CCGTGCGCG GCA CTCGCACGGTCAGCAAGCG CGACATGGTTCTCAA ureC 1093063 - 1094781 + | UREASE, ALPHA SUBUNIT ureE 1094808 - 1095428 + | UREASE ACCESSORY PROTEIN ureF 1095425 - 1096117 + | UREASE ACCESSORY PROTEIN ureG 1096131 - 1096760 + | UREASE ACCESSORY PROTEIN RALTA_A1073 1097206 - 1096757 - | putative transcriptional regulator, xenobiotic response element (XRE) family RALTA_A1074 1097323 - 1098306 + | conserved hypothetical protein, RmlC-like cupin similarity RALTA_A1075 1099064 - 1098372 - | putative glutathione S-transferase enzyme with thioredoxin-like domain TERM 878 1099153 - 1099171 + r 86 -11.7 -4.14392 | opp_overlap 1099153 CACAGAAGAAAAAAA CGCGCAG GCAAG CTGCGCG TTTTCCACATTGCCG TERM 879 1099171 - 1099153 - R 100 -11.7 -5.9218 | opp_overlap 1099153 CACAGAAGAAAAAAA CGCGCAG GCAAG CTGCGCG TTTTCCACATTGCCG RALTA_A1076 1100482 - 1099220 - | putative ACYL-COA DEHYDROGENASE RALTA_A1077 1100659 - 1101597 + | putative TRANSCRIPTIONal REGULATOR, LysR family RALTA_A1078 1101888 - 1103069 + | putative lipoprotein RALTA_A1079 1104279 - 1103089 - | hypothetical protein; putative transmembrane protein RALTA_A1080 1104989 - 1104276 - | RNA polymerase sigma-70 factor TERM 880 1104953 - 1104918 - G 100 -28.4 -2.87468 | CCGGAGTATAGGAGA GCGCAGGGTGGCGCGA CAGT CCGCGCCACCCTGCGC CGGCTGCGCGCCGCG RALTA_A1081 1106688 - 1104976 - | putative lipoprotein, Von Willebrand factor type A domain TERM 881 1105873 - 1105929 + gH 74 -14.2 -2.61264 | overlap 1105872 CAGCGCAATGCCGCT GGCGCCGGCGGTGCTGCCGCCCGCCA CCAGC TGGTCGATGGCGGCGACGATGGCGCC CTTGTCGCTGCCCGG TERM 882 1107860 - 1107821 - gR 78 -10.6 -3.97947 | gap 1, overlap 1107831 TGCACCGATTACAAA CGCTGGAAGATCTGCGGCA TGC CGCCGCCG-TCGTCCGGCG GTATCGCCATCGCGC ggt1 1106687 - 1108777 + | GAMMA-GLUTAMYLTRANSPEPTIDASE (putative PRECURSOR) RALTA_A1083 1109618 - 1108869 - | conserved hypothetical protein; putative exported protein TERM 883 1109715 - 1109685 - R 100 -22.7 -5.07652 | GCGCCGAAAAGAAAA CGCCCCTGCAAGC CTTCC GCTTGCAGGGGCG CGGCGATAGGCCGCT RALTA_A1084 1110813 - 1109737 - | putative Aminoglycoside phosphotransferase RALTA_A1085 1111596 - 1110868 - | putative Phosphoglycerate/bisphosphoglycerate mutase paaG4 1112470 - 1111691 - | acyl-CoA hydratase, phenylacetic acid degradation (strain W) paaH1 1114043 - 1112508 - | 3-hydroxybutyryl-CoA dehydrogenase, phenylacetic acid degradation TERM 884 1114617 - 1114635 + G 74 -13.2 -3.31461 | CCGCTATATCCCCGC CTTCGCCA GCC TGGCGAAG TTCTCGCCGTACATC RALTA_A1088 1114219 - 1114860 + | putative Glutathione transferase TERM 885 1114907 - 1114925 + T 93 -16 -3.70469 | opp_overlap 1114907 TCGGTGGTGGAGATA CGCCCGCA ATT TGCGGGCG TTTCCGCTTCTGCTT TERM 886 1114925 - 1114907 - T 83 -16 -2.87132 | opp_overlap 1114907 TCGGTGGTGGAGATA CGCCCGCA ATT TGCGGGCG TTTCCGCTTCTGCTT ybdL 1116111 - 1114939 - | methionine aminotransferase, PLP-dependent TERM 887 1116248 - 1116210 - R 75 -12.2 -3.53811 | opp_overlap 1116245, overlap 1116194 CGGATCGGCCTTAAA GCGGATCGCCGGCCGGGC CCA GCGCGGCCAGCCAGGCGC CGAATGCCGGCGGTG RALTA_A1090 1116747 - 1116205 - | conserved hypothetical protein, DUF132 RALTA_A1091 1116764 - 1117582 + | conserved hypothetical protein, DUF328 TERM 888 1118301 - 1118256 - g 70 -12.6 -3.36273 | gap 3, overlap 1118257 1118292 CGTGCCGAACATGAA CCCCGACGGC-TCGGCGCGC-GG CAA CCTGCGCACCAACGCCG-CGGGC GCCAACCTGAACCGC TERM 889 1118300 - 1118257 - g 73 -16.1 -2.6155 | gap 3, overlap 1118256 1118292 GTGCCGAACATGAAC CCCGACGGC-TCGGCGCGC-GG CAA CCTGCGCACCAACGCCG-CGGG CGCCAACCTGAACCG TERM 890 1118443 - 1118465 + G 79 -11.2 -4.07568 | overlap 1118444 CCGTACAACTTCGTC GCCGGCAGCG AGA TGCTGCCGGG TTTTACCGAAGCACG TERM 891 1118444 - 1118464 + G 74 -14.7 -3.04398 | overlap 1118443 CGTACAACTTCGTCG CCGGCAGCG AGA TGCTGCCGG GTTTTACCGAAGCAC TERM 892 1118726 - 1118741 + G 70 -3.2 -4.4009 | overlap 1118728 TGGGAACGGCGATGC TGCAGG CGAT CCTGGA TTTTCTGGGCTGAGC RALTA_A1092 1117621 - 1118754 + | putative Zinc carboxypeptidase TERM 893 1118795 - 1118853 + T 93 -7.3 -5.19251 | gap 1, opp_overlap 1118811 1118812 1118814, overlap 1118798 1118799 1118803 1118811 CCCTCTCCCATTTAT GGGATAGGGGCGACAAC-CAGCGCCCGC ATGG GCGTGCGCTGCGTTGCTGCGTCTACTGC TTTTTCTTGCTCTTG TERM 894 1118835 - 1118812 - T 71 -13.8 -2.58249 | opp_overlap 1118811 1118803 1118799 1118798 1118795, overlap 1118811 1118814 GATAGGGGCGACAAC CAGCGCCCGC ATGG GCGTGCGCTG CGTTGCTGCGTCTAC RALTA_A1093 1119755 - 1118847 - | hypothetical protein RALTA_A1094 1120777 - 1119890 - | putative N-formylglutamate amidohydrolase RALTA_A1095 1121778 - 1120792 - | conserved hypothetical protein, UPF0065 RALTA_A1096 1121909 - 1122832 + | putative transcriptional regulator, LysR family RALTA_A1097 1124010 - 1122835 - | conserved hypothetical protein, COG3825 TERM 895 1123014 - 1123027 + g 73 -9.5 -3.84406 | GGTTCAGCCACACCG CGCCG GCCT CGGCG TTGTTGTACTCGACC RALTA_A1098 1124642 - 1124040 - | putative Acetyltransferase/N-acetylase RALTA_A1099 1125547 - 1124660 - | putative AAA ATPase, type A vWA domain RALTA_A1100 1126087 - 1126434 + | putative cytochrome c, class IC RALTA_A1101 1126445 - 1126843 + | putative cytochrome c, class IC TERM 896 1126877 - 1126896 + T 100 -13.6 -5.52384 | opp_overlap 1126877 GCCTGCACGCAAAAA GCCGCTTC GCTG GAAGCGGC TTTTTTTCGTCCGCG TERM 897 1126896 - 1126877 - T 100 -13.6 -4.65895 | opp_overlap 1126877 GCCTGCACGCAAAAA GCCGCTTC GCTG GAAGCGGC TTTTTTTCGTCCGCG aroG 1128049 - 1126970 - | 3-deoxy-D-arabinoheptulosonate-7-phosphate synthase (DAHP synthetase, phenylalanine-repressible) TERM 898 1128109 - 1128131 + H 100 -9.1 -5.47159 | opp_overlap 1128111, overlap 1128111 AAACGGGTATAAAAA AACCGCCAG GGTCG CTGGCGGTC TTTTTTGTATTCGGG TERM 899 1128129 - 1128111 - H 100 -11.7 -5.61596 | opp_overlap 1128109 1128111 ACGGGTATAAAAAAA CCGCCAG GGTCG CTGGCGG TCTTTTTTGTATTCG TERM 900 1128111 - 1128129 + H 91 -11.7 -4.36863 | opp_overlap 1128111, overlap 1128109 ACGGGTATAAAAAAA CCGCCAG GGTCG CTGGCGG TCTTTTTTGTATTCG RALTA_A1103 1128563 - 1129618 + | conserved hypothetical protein; putative (SAM dependent) methyltransferase tldD 1131163 - 1129703 - | antibiotic maturation peptidase RALTA_A1105 1132096 - 1131260 - | putative Nitrilase/N-carbamoyl-D-aminoacid amidohydrolase RALTA_A1106 1136511 - 1132114 - | conserved hypothetical protein, COG3164; putative TRANSMEMBRANE PROTEIN TERM 901 1136570 - 1136558 - H 73 -3.3 -4.67697 | overlap 1136559 1136560 GGCTAAAACAAGAAA TCGCA AGC TGCGC GTGCCGCAGCGGGGT TERM 902 1136741 - 1136767 + G 78 -13.6 -3.59979 | GTCGCACCGGGGCAG GGCCCCGGCACC ATG GCTGCCGGCGCC TTTGCCGTCACCGCG glnE 1136633 - 1139620 + | bifunctional: deadenylyltransferase ; adenylyltransferase for glutamine synthetase RALTA_A1108 1139610 - 1140254 + | conserved hypothetical protein; putative TRANSMEMBRANE PROTEIN RALTA_A1109 1141898 - 1140258 - | putative EXTRACELLULAR PROTEASE, subtilisin-like protein RALTA_A1110 1142496 - 1142053 - | conserved hypothetical protein; putative transmembrane protein recN 1144316 - 1142565 - | recombination and repair protein TERM 903 1143908 - 1143873 - G 78 -16.9 -3.06183 | opp_overlap 1143879, overlap 1143875 GGCATGGGCATCGAA CAGCAGCCGCTGCGC ATCGGG GCGCAGCAGTTGCTG GTGCGCATGCTGGCC TERM 904 1144175 - 1144117 - G 73 -16.5 -2.57564 | gap 1, overlap 1144116 GGATGGGTCGAGAAG GTG-GCGCTGACGCTGGCGCGCGGCGCG CCTT CGCGCACCACGCCGGCATCGGCGCGCTC GCCCAGCACCAGCGC nadK 1145300 - 1144383 - | NAD kinase TERM 905 1145080 - 1145095 + g 71 -10.4 -3.72576 | AGCACCACGGCAACG TCGGCC TGCC GGCCGA TTTCCTCGGCGGACA hrcA 1145427 - 1146461 + | HEAT-INDUCIBLE TRANSCRIPTION REPRESSOR, Negative regulator of class I heat shock protein hemH 1146592 - 1147707 + | ferrochelatase TERM 906 1147957 - 1147917 - g 74 -11 -3.75629 | opp_overlap 1147935, overlap 1147921 GAGCTCGAAGTCAAA GGCATCGCC-CCGGCGCGCG GGC CG-GCGCCGGTGGCGCAGAC GCTGTATCAGGAAAG hslR 1147704 - 1148099 + | ribosome-associated heat shock protein 15 RALTA_A1116 1148378 - 1148169 - | Putative lipid-like peptide; putative transmembrane protein grpE 1148618 - 1149193 + | Hsp 24 nucleotide exchange factor RALTA_A1118 1149321 - 1149752 + | putative THIOREDOXIN PROTEIN RALTA_A1119 1151105 - 1149774 - | outer membrane phospholipase A RALTA_A1120 1151634 - 1151203 - | hypothetical protein RALTA_A1121 1151705 - 1152676 + | conserved hypothetical protein, DUF6; putative TRANSMEMBRANE PROTEIN TERM 907 1152692 - 1152716 + F 75 -13.5 -3.06796 | opp_overlap 1152692 1152691 ACGGGTTGCTCAAAG GCGCTGTCGTG GCG CACGCCGGCGC TTGGGTACAATCGCG RALTA_A1122 1152765 - 1153352 + | Putative NADH dehydrogenase/NAD(P)H nitroreductase TERM 908 1153377 - 1153394 + T 100 -8.4 -5.77853 | opp_overlap 1153377 GCTACTGGTAGATGA GCGACC CGGGGT GGTCGC TTTTTTTTGGGCGTT TERM 909 1153525 - 1153553 + T 77 -13.8 -3.30474 | opp_overlap 1153514 1153520 1153523 AGGAGGCAAAGAGCG CGTCGCCTGGGC GGCTG GCCAAGGCGGCG TTGGTGGTTCTGGCG RALTA_A1124 1154678 - 1153953 - | putative Coenzyme Q (ubiquinone) biosynthesis protein Coq4 TERM 910 1154751 - 1154704 - R 86 -16.3 -3.20723 | gap 3 CTGGGATCAAGCGAA CTGTGCCGCCCGCGGCGCGG-TGC CCT GCATCCGCGCCGC-GGCGGTGC-G CACGAAATCGACACT RALTA_A1125 1155678 - 1154695 - | lactone esterase TERM 911 1155598 - 1155553 - G 73 -10.2 -3.87815 | opp_overlap 1155564, overlap 1155524 GGGCACGTCGACAAA GCGGCCCGACGGCGGCATCG CCGCTT CGATGCGGCGGGCGGTACGC CAGGTGTACAGCCAT RALTA_A1126 1157234 - 1155675 - | Cyclohexanone 1,2-monooxygenase, FAD-binding RALTA_A1127 1157321 - 1157986 + | putative transcriptional egulator, TetR family nth 1158599 - 1157955 - | endonuclease III; DNA glycosylase/apyrimidinic (AP) lyase, acts on 5-formyluracil and 5-hydroxymethyluracil rsxB 1159417 - 1158596 - | FERREDOXIN [4FE-4S] PROTEIN TERM 912 1158880 - 1158896 + g 71 -2.9 -4.64676 | overlap 1158870 TGGCGGCGGCCTTGG CGGCG AGGCGTG CGTCG TTTTCTTCGCGCTCG TERM 913 1159474 - 1159459 - H 100 -11.8 -4.74132 | opp_overlap 1159460 1159470, overlap 1159447 1159445 1159460 AGAGCGGATCAAAAA GCCGCG CCAG CGCGGC GCCGGCCACCGGCAG TERM 914 1159507 - 1159460 - H 74 -11.8 -3.43756 | gap 1, opp_overlap 1159460 1159470, overlap 1159447 1159445 1159459 GAGCGGATCAAAAAG CCGCGCCAGCGCGGCGC-CGGCC ACC GGCAGAGCGCCAAATTTGCGCGG TGCTGTGAGCGGTTG TERM 915 1159770 - 1159751 - g 73 -10.6 -3.93038 | overlap 1159767 GAGCCCAAGACCAAA CGCGACCC GGAA GGGACGCG CCGACGCATCCTCGC RALTA_A1130 1159727 - 1160362 + | putative TRANSCRIPTIONal REGULATOR, TetR family TERM 916 1160408 - 1160391 - T 93 -14.1 -4.12532 | opp_overlap 1160391 CTGCCCAGACAGAAA CGCCCGC TTGC GCGGGCG TTTGTCTTTTACTTG TERM 917 1160391 - 1160408 + T 100 -14.1 -4.50859 | opp_overlap 1160391 CTGCCCAGACAGAAA CGCCCGC TTGC GCGGGCG TTTGTCTTTTACTTG phaZ1 1161685 - 1160417 - | POLY[D(-)-3-HYDROXYBUTYRATE](PHB) DEPOLYMERASE TERM 918 1160526 - 1160558 + g 72 -3.4 -4.59773 | gap 2 AAGATCCCGTAGTGG CCGCAA-C-GCACGGC ATT GAGGTGCTGCTTGCGG TTTTTCGGGATGCCG TERM 919 1161925 - 1161912 - R 100 -9.5 -4.88295 | opp_overlap 1161912, overlap 1161906 AAACAAATGCAAAAA GCGGC CGAA GCCGC TTTTTTTCTTATGTT TERM 920 1161912 - 1161925 + r 100 -9.5 -5.94214 | opp_overlap 1161912 1161906 AAACAAATGCAAAAA GCGGC CGAA GCCGC TTTTTTTCTTATGTT aspC 1163191 - 1161995 - | aspartate aminotransferase uvrB 1163364 - 1165448 + | ATP-dependent DNA excision repair enzyme, DNA damage recognition component RALTA_A1134 1165558 - 1165779 + | hypothetical protein RALTA_A1135 1165819 - 1166061 + | hypothetical protein RALTA_A1136 1166146 - 1166634 + | putative Protein-tyrosine-phosphatase TERM 921 1167047 - 1167070 + G 72 -3.7 -4.57073 | overlap 1167048 GGCCTGTTCTGCGAT ACCGGCGTG GCCCAG CACCCCGGC TTTTTCAGCGAGATG TERM 922 1167380 - 1167400 + G 77 -11.1 -3.9392 | overlap 1167381 CGCTCGCGGCTGGCG GGGCGTGTC GAG GACACGCCG TTCTTTCGCCTGGAC TERM 923 1167381 - 1167399 + G 72 -14.6 -2.96031 | overlap 1167380 GCTCGCGGCTGGCGG GGCGTGTC GAG GACACGCC GTTCTTTCGCCTGGA RALTA_A1137 1166720 - 1168816 + | putative SITE-SPECIFIC RECOMBINASE TRANSMEMBRANE PROTEIN RALTA_A1138 1168946 - 1169497 + | putative transcriptional regulator TERM 924 1169978 - 1169945 - g 72 -4.7 -4.42238 | opp_overlap 1169954, overlap 1169946 1169947 1169975 GGACGTGAAGGAAAA CGGCCTGCTCGA-CA TGGACG TGTTCAAGCAGGC-G CTGCGCCCGGACACC iscS 1169556 - 1170773 + | cysteine desulfurase (tRNA sulfurtransferase), PLP-dependent iscU 1170841 - 1171239 + | FeS cluster assembly scaffold protein iscA 1171280 - 1171600 + | Fe-S cluster assembly and activation factor RALTA_A1142 1171635 - 1171859 + | hypothetical protein TERM 925 1171879 - 1171895 + F 100 -11.5 -5.4505 | opp_overlap 1171879 GGCAGCACGGACGAA GGGCGGC GCG GCCGCTC TTTTTTCTTGGGGAA TERM 926 1172321 - 1172295 - g 88 -12.3 -4.25283 | gap 1 ACTGCGCCAGGAAAA GCG-CGAGCGCC ACGC GGCACTCGGCGC GCTGCTGGACGCTGG hscB 1171903 - 1172433 + | Fe-S clusters assembly co-chaperone protein, regulator of the ATP-dependent activity of HscA TERM 927 1173374 - 1173352 - g 79 -15.6 -3.33696 | overlap 1173314 CGCGCCGCCAAGGAA GCGCTGTCGG AAG CCGACAGCAC GGTGATCGACGCGGT hscA 1172530 - 1174395 + | Fe-S clusters assembly chaperone (Hsp70 family), ATPase activity fdx 1174436 - 1174774 + | Fe-S clusters assembly [2FE-2S] ferredoxin iscX 1174809 - 1175003 + | Fe-S cluster assembly putative chaperon or iron donor protein TERM 928 1175048 - 1175030 - T 93 -7.3 -4.99861 | opp_overlap 1175024 1175024 1175034, overlap 1175024 CAGGAATGAGAAAAA GGCCGGC TTGAT GCAGGCC TTTTTGCTTTGATGC TERM 929 1175034 - 1175048 + T 93 -7.8 -5.01811 | opp_overlap 1175030 1175024, overlap 1175024 1175024 AATGAGAAAAAGGCC GGCTTG ATG CAGGCC TTTTTGCTTTGATGC lysS 1176657 - 1175104 - | lysine tRNA synthetase, constitutive RALTA_A1148 1177464 - 1176706 - | putative DEHYDROGENASE/REDUCTASE OXIDOREDUCTASE TERM 930 1176882 - 1176940 + g 82 -17.5 -3.06261 | gap 3 CCTGCATGCCGGTAT CGATCACGCC-CGGCGCCAGCGCCACCG CGCGAA CGGT-GCGC-GGCGCCTCGGCGTGGGCG TATTCGGCATTGACC TERM 931 1177125 - 1177146 + g 79 -5.1 -4.72272 | gap 1, overlap 1177128 GCGCCGCCAGGTTGG TCAGCAGGTG CGG CACCAGC-GA TTTTTCCTGCAGCGC prfB 1178638 - 1177565 - | peptide chain release factor RF-2 TERM 932 1178752 - 1178703 - H 83 -16.4 -2.91467 | gap 2, opp_overlap 1178741 AAACCTCGAATTATA GCGGATCGGCGCCGCAGATCGCGG CTTC CCGCCCTCTGCGGCG-CGG-CCGC CAGCCGAACGCAACG RALTA_A1150 1178861 - 1179586 + | putative peptidase; putative exported protein recJ 1181317 - 1179614 - | ssDNA exonuclease, 5'--> 3'-specific, Mg-dependent RALTA_A1152 1182691 - 1181354 - | hypothetical protein lolE 1182703 - 1183953 + | outer membrane lipoproteins ABC transporter, membrane component lolD 1183946 - 1184686 + | outer membrane lipoproteins ABC transporter, ATP_binding component RALTA_A1155 1184700 - 1185560 + | putative DNAse, hydrolase with metallo-dependent hydrolase domain RALTA_A1156 1185632 - 1188070 + | putative TRANSPORTER, DNA internalization/competence protein ComEC/Rec2 family RALTA_A1157 1189028 - 1188093 - | putative transcriptional regulator, RpiR/GlvR family (HTH and SIS (phosphosugar-binding) domains) TERM 933 1188151 - 1188172 + g 72 -13.7 -3.15544 | gap 1 GGCGTGGCTGTCTGC GCCGC-CGCG GCG CGCGCGCGGC TTCGTGCCGGTGCCG TERM 934 1189415 - 1189439 + G 74 -12.1 -3.57561 | GCCGCTGCGCGGCCT GTCCTGCGCCA ACC TGGCGCACGGC TTTGCCGCATTGCCG edd 1189284 - 1191176 + | 6-phosphogluconate dehydratase gntK 1191342 - 1191848 + | gluconate kinase 2 in GNT I system, thermoresistant TERM 935 1191946 - 1191908 - f 100 -24.7 -3.05384 | opp_overlap 1191914 1191916 1191923 1191925 1191943, overlap 1191914 1191916 GCGCTCTCCATGCAA CGCAAAGAGGCCGCCGG TCCTG CCGGCGGCCTATTTGCG TGCGCTGGCAGGCAT TERM 936 1191914 - 1191940 + F 86 -15.8 -3.65902 | opp_overlap 1191908 1191914 1191916, overlap 1191916 1191923 1191925 TCCATGCAACGCAAA GAGGCCGCCGGT CCT GCCGGCGGCCTA TTTGCGTGCGCTGGC TERM 937 1191940 - 1191914 - f 90 -15.1 -3.76952 | opp_overlap 1191914 1191916 1191923 1191925, overlap 1191908 1191916 TCCATGCAACGCAAA GAGGCCGCCGG TCCTG CCGGCGGCCTA TTTGCGTGCGCTGGC TERM 938 1191938 - 1191916 - f 95 -17.7 -3.46783 | opp_overlap 1191914 1191916 1191923 1191925, overlap 1191914 1191908 CATGCAACGCAAAGA GGCCGCCGG TCCTG CCGGCGGCC TATTTGCGTGCGCTG TERM 939 1191916 - 1191938 + F 95 -18.4 -3.41073 | opp_overlap 1191916 1191914 1191908, overlap 1191914 1191923 1191925 CATGCAACGCAAAGA GGCCGCCGGT CCT GCCGGCGGCC TATTTGCGTGCGCTG TERM 940 1192175 - 1192130 - f 91 -20.5 -2.73681 | gap 2, opp_overlap 1192153, overlap 1192117 1192155 CAGCCAGGGCAACCA GGGCGGCCGGCA--GCGGCGC GGACAA GCGCCGCCGTGCCGGCGGCCC GCGACATGGAGGAGC TERM 941 1192207 - 1192155 - f 82 -14.7 -3.28924 | gap 1, opp_overlap 1192153, overlap 1192130 CAGCGGCGCGGACAA GCGCCGCCGTGCCGGCGGC-CCGC GACATG GAGGAGCGGCCATCATGGCGGCGC GGTACTTCGACGAGA RALTA_A1160 1192198 - 1193673 + | conserved hypothetical protein, DUF404 TERM 942 1194008 - 1194045 + G 87 -19.8 -3.05384 | opp_overlap 1194028 1194029 TCGATCATGAGCTGC CTGCGCGCGGCGCGCG AGAATG CGCGCGCGGTGCGCGG TTCGCTGACCACCGA RALTA_A1161 1193744 - 1194742 + | conserved hypothetical protein, DUF403 TERM 943 1195119 - 1195161 + G 71 -11.2 -3.53761 | gap 1, overlap 1195120 1195148 GCCGCTGTACTTCCT TGCCAGCA-CGCCGCTGAC CACCGC GCCGGCGGCGATGCAGGCG TTTGCCGCGCCGTTC RALTA_A1162 1194763 - 1195623 + | putative Cysteine proteinase, Transglutaminase-like superfamily RALTA_A1163 1195739 - 1196560 + | hypothetical protein TERM 944 1196946 - 1196935 - g 76 -7.2 -4.2828 | GGGCATCGATGAAAA GCCG GGCC CGGC GGCGGTGACCAAGAA TERM 945 1197253 - 1197280 + G 70 -8.3 -3.85698 | CGGCCTGGGGGCCAC GCGCCGGCTGG TCGGGC CCAACCTGCGC TTTATCGAAGGCGGC RALTA_A1164 1196573 - 1197379 + | putative hydrolase/acyltransferase pyrG 1197519 - 1199171 + | CTP synthetase TERM 946 1199430 - 1199411 - g 78 -10.6 -4.18018 | CCTGGGCATGGAAAA GGGCCTGG AGAT CCTGGCCC ACGTCAAGCGCGAGA kdsA 1199199 - 1200068 + | 3-deoxy-D-manno-octulosonic acid 8-P synthetase RALTA_A1167 1200159 - 1200452 + | conserved hypothetical protein, DUF1330 eno 1200568 - 1201857 + | enolase, phosphopyruvate hydratase TERM 947 1201910 - 1201941 + G 100 -26.6 -4.9725 | overlap 1201911 TGCGGGTGAATGGGA TGGCGGCGGCCGGG ACTT CCCGGCCGCCGCCG TTTTTGTATCGAAAT TERM 948 1201911 - 1201940 + G 100 -27.9 -3.57627 | overlap 1201910 GCGGGTGAATGGGAT GGCGGCGGCCGGG ACTT CCCGGCCGCCGCC GTTTTTGTATCGAAA ftsB 1201909 - 1202367 + | Septum formation initiator RALTA_A1170 1202847 - 1202425 - | hypothetical protein RALTA_A1171 1204004 - 1203003 - | putative REDOX REGULATED MOLECULAR CHAPERONE HSP33 HEAT-SHOCK-LIKE PROTEIN RALTA_A1172 1204566 - 1204042 - | conserved hypothetical protein; putative transferase RALTA_A1173 1204700 - 1205581 + | conserved hypothetical protein, DUF455 RALTA_A1174 1207317 - 1205578 - | putative AMP-dependent synthetase and ligase TERM 949 1206033 - 1206046 + g 71 -2.3 -4.62069 | overlap 1206029 1206028 1206029 CGGTGTACTTGGCCG CGGTG GCGG CGTCG TTTTTCCAGTAGCCC TERM 950 1206696 - 1206742 + g 78 -14.4 -3.56704 | gap 1, overlap 1206672 1206726 GCGCGCCCTTGGGCG GGCCGGTGGTGCCGCTGGTGT AGATCA GCACC-GCGGCCTCGTCGGCC TTGGTTTGCTCGGCG RALTA_A1175 1207476 - 1208375 + | putative Alpha/beta fold hydrolase RALTA_A1176 1209478 - 1208396 - | putative THIOREDOXIN REDUCTASE OXIDOREDUCTASE, putative general stress protein TERM 951 1210002 - 1209945 - g 71 -11.2 -3.64822 | gap 2 ATGGCCTGACTGAAA CCCGCTCGGGCC-GCGCG-CGGCG CGCGCGCGATAT CGCCGACGCGCTGGCCAGGGTGGG CATCGACGGTGCCTA RALTA_A1177 1209647 - 1210492 + | conserved hypothetical protein; putative DNA repair enzyme, PHP (Polymerase and Histidinol Phosphatase) domain RALTA_A1178 1210561 - 1211184 + | hypothetical protein RALTA_A1179 1211261 - 1211926 + | putative peptidase, M50 family; putative INTEGRAL MEMBRANE PROTEIN RALTA_A1180 1211937 - 1212524 + | hypothetical protein dapA 1212587 - 1213546 + | dihydrodipicolinate synthase RALTA_A1182 1213596 - 1214834 + | putative lipoprotein RALTA_A1183 1214902 - 1215690 + | conserved hypothetical protein; putative Metal-dependent hydrolase TERM 952 1215758 - 1215731 - T 100 -12.8 -4.56597 | opp_overlap 1215737 1215750, overlap 1215737 GGCGCGTCCCAAAAA CAAAAACCGGCC CGAA GGCCGGTTTTTT TATCGGTGAAAAACC TERM 953 1215737 - 1215752 + T 100 -11.8 -5.64274 | opp_overlap 1215731 1215737, overlap 1215750 TCCCAAAAACAAAAA CCGGCC CGAA GGCCGG TTTTTTTATCGGTGA TERM 954 1215752 - 1215737 - T 100 -11.8 -5.61881 | opp_overlap 1215737 1215750, overlap 1215731 TCCCAAAAACAAAAA CCGGCC CGAA GGCCGG TTTTTTTATCGGTGA RALTA_A1184 1216018 - 1215776 - | Outer membrane protein H.8 precursor TERM 955 1215930 - 1215946 + g 70 -9.3 -3.89957 | overlap 1215932 GGAGCAGCCGTGTCA GCGGCCG GAG CGGCGGC TTCTTCCTTCTTGCC RALTA_A1185 1217422 - 1216217 - | conserved hypothetical protein, COG2850 TERM 956 1217252 - 1217242 - GH 76 -8.2 -4.2349 | overlap 1217243 CGGCGAGATCGAAAA GCGC ATC GCGC GACACCGGCGGCACA slyD 1217407 - 1217961 + | FKBP-TYPE PEPTIDYL-PROLYL CIS-TRANS ISOMERASE (ROTAMASE) TERM 957 1217988 - 1218009 + Tr 95 -15.9 -4.05788 | opp_overlap 1217991, overlap 1217991 CGTATCGCCCCTGAA GAAGCCGGC CGTT GCCGGCTTC TTTGCTTTGGCGCGC TERM 958 1217991 - 1218006 + Tr 86 -11.8 -4.15396 | opp_overlap 1217991, overlap 1217988 ATCGCCCCTGAAGAA GCCGGC CGTT GCCGGC TTCTTTGCTTTGGCG TERM 959 1218006 - 1217991 - TR 75 -11.8 -3.61517 | opp_overlap 1217991 1217988 ATCGCCCCTGAAGAA GCCGGC CGTT GCCGGC TTCTTTGCTTTGGCG RALTA_A1187 1219066 - 1218026 - | conserved hypothetical protein; putative TRANSMEMBRANE PROTEIN mutS 1221693 - 1219063 - | methyl-directed mismatch repair protein TERM 960 1221721 - 1221745 + r 75 -3.4 -4.85599 | GCCTGCGGACGAATC GGCCTGCGCC TGTTC GGTGTCGGTC TTTTTCTGCAATCCC RALTA_A1189 1222412 - 1221978 - | putative universal stress protein (uspA family) TERM 961 1222460 - 1222490 + r 80 -14.7 -3.17075 | gap 1 CGCGAAGCGGGCGAG CGCGG-GCGGCATC CTAT GCTGCCGCGCCGCG TTCAGTTGGCCAGCG RALTA_A1190 1223601 - 1222492 - | conserved hypothetical protein, DUF344 RALTA_A1191 1223830 - 1223615 - | conserved hypothetical protein, DUF465 TERM 962 1223657 - 1223671 + g 82 -4.2 -5.0133 | opp_overlap 1223647 ATAGAGCTGGTCCTT GAGCAG CAG CTTCTC TTTTTTCAGCCGCTC TERM 963 1224014 - 1223992 - R 100 -17.7 -4.85782 | CCCCGTAAAAACAAA CGCCCGCCG GAATG CGGCGGGCG GGCTGGCATGGCCGC suhB 1224869 - 1224048 - | inositol monophosphatase TERM 964 1225417 - 1225475 + G 82 -16.7 -3.36273 | overlap 1225418 1225466 GGCCGCCGCGGCTGC TGCCGCGT-GCCGCCGCCGCGCGGGCG CGCCAGA CGCTGG-GCGGCAGCGGCGACGTGGCG TTCGTGTTCGGCAAC TERM 965 1225418 - 1225474 + G 77 -18 -2.6155 | overlap 1225417 1225466 GCCGCCGCGGCTGCT GCCGCGT-GCCGCCGCCGCGCGGGCG CGCCAGA CGCTGG-GCGGCAGCGGCGACGTGGC GTTCGTGTTCGGCAA RALTA_A1193 1225080 - 1225898 + | tRNA:Cm32/Um32 methyltransferase (TrMet(Xm32)) TERM 966 1226089 - 1226064 - f 73 -11.1 -3.56092 | gap 1, opp_overlap 1226062 GGATCAGGGGCCAAA TGCCGGTGCCGC AGG GCGGG-CCGGCA AATCCCTTACACTCC cysE 1226163 - 1226945 + | O-ACETYLSERINE SYNTHASE (SERINE ACETYLTRANSFERASE) lpxH 1227785 - 1226988 - | UDP-2,3-diacylglucosamine hydrolase ppiB 1228352 - 1227852 - | peptidyl-prolyl cis-trans isomerase B (rotamase B) ppiA 1228959 - 1228375 - | peptidyl-prolyl cis-trans isomerase A (rotamase A) RALTA_A1198 1229696 - 1229028 - | conserved hypothetical protein, TPR repeats; putative exported PROTEIN TERM 967 1230000 - 1230023 + H 71 -13.8 -2.62616 | GCCATGGCCCGCGTT GCCTGCCGGG CGAA CCCGGCAGAC TCCTCTCACCACTCA TERM 968 1230879 - 1230862 - g 72 -4.9 -4.51097 | gap 1, opp_overlap 1230862 TCAACGACGAGAAAA TGTCCAAG TCG CTTGG-CA ATTTTTTCACCATCC TERM 969 1230909 - 1230932 + G 71 -10.3 -3.75024 | CGCGAGGTGCTGAAG GCGTACGAC GCCGAG GTCGTGCGC TTCTTCATCCTGCGC cysS 1230048 - 1231436 + | cysteine tRNA synthetase RALTA_A1200 1231421 - 1232284 + | putative DNA-3-methyladenine glycosylase II accA 1232400 - 1233371 + | acetylCoA carboxylase, carboxytransferase subunit alpha TERM 970 1233426 - 1233396 - g 79 -14.6 -3.35679 | opp_overlap 1233396 CCGGCTGACCGACAA GGTCGCACAGGCCC TGC AGGCCGGTGCGGCC TTTGTTGTTTCTGGC TERM 971 1233396 - 1233426 + G 100 -16.1 -4.63048 | opp_overlap 1233396 CCGGCTGACCGACAA GGTCGCACAGGCC CTGCA GGCCGGTGCGGCC TTTGTTGTTTCTGGC tilS 1233385 - 1234791 + | tRNA(Ile)-lysidine synthetase lysC 1234948 - 1236201 + | ASPARTATE KINASE PROTEIN TERM 972 1236445 - 1236480 + F 100 -17 -5.0133 | overlap 1236450 AACCGTCCTTGGCGG CGGAACCCCGGAAGAT CGCG GTCTTCCGGGGTTTTG TTTTTTGGGCCCGTG TERM 973 1236450 - 1236475 + F 100 -15.5 -5.42198 | overlap 1236445 TCCTTGGCGGCGGAA CCCCGGAAGAT CGCG GTCTTCCGGGG TTTTGTTTTTTGGGC RALTA_A1204 1236704 - 1237633 + | putative Adenylate cyclase TERM 974 1237806 - 1237836 + G 75 -4.5 -4.63486 | overlap 1237807 CCATTCCCAGTCACC CGACCTTCCGGCC ACCGC GCCCGGAGGGACA TTTTCTTGCCGCCAT TERM 975 1239634 - 1239664 + G 72 -13.2 -3.14132 | TTCGCTGGAGTGCTG GGGCGGCGCCACCT TCG ACGTGGCGCTGCGC TTCCTGAAGGAAGAC RALTA_A1205 1237751 - 1241353 + | putative Pyruvate carboxylase TERM 976 1241385 - 1241347 - f 73 -12.5 -3.17075 | gap 2 GCTGGTGGAACTGAA GGACTGAGCCCGGCGGTGT GAC ACACCGCC-G-CGCAGCCC GAGCCTTGCGCAAAA TERM 977 1241427 - 1241401 - f 86 -13.1 -4.07885 | gap 1, opp_overlap 1241401 GAGCCTTGCGCAAAA CCCCGG-AAGAC CACG GTCTTTCCGGGG TTTTTTGTCTGGATG TERM 978 1241401 - 1241427 + F 100 -13.1 -5.38047 | gap 1, opp_overlap 1241401 GAGCCTTGCGCAAAA CCCCGG-AAGAC CACG GTCTTTCCGGGG TTTTTTGTCTGGATG TERM 979 1241592 - 1241580 - f 73 -3.3 -4.72007 | CGTGATCAAAACAAA GTGGC GGC GCGAC CCGTTGGTGCAGGCG TERM 980 1241669 - 1241645 - g 100 -7.1 -5.48063 | gap 1, opp_overlap 1241645 1241663 AGTGAAGATAAAAAA CGCAGCACGG TGGTCG CCG-GCCGCG GCTGCGGTCTCTTTC TERM 981 1241688 - 1241729 + G 70 -12.9 -3.35679 | gap 1, overlap 1241689 GCGGTCTCTTTCGCA ACCTGCC-TGCTGGCGCTGC CCG GCGCCGCCGGCGCGGCAGGG TTCTCGCTGCAGGCG TERM 982 1241689 - 1241728 + G 73 -16.4 -2.61264 | gap 1, overlap 1241688 CGGTCTCTTTCGCAA CCTGCC-TGCTGGCGCTGC CCG GCGCCGCCGGCGCGGCAGG GTTCTCGCTGCAGGC RALTA_A1206 1241625 - 1242200 + | putative lipoprotein TERM 983 1242582 - 1242555 - g 70 -12 -3.30441 | gap 1 GACCATCGTCTACAA GGGCGAGGTCGCG CAT CGCGAC-TCGACC GGGCAGGGCGGCGTC RALTA_A1207 1242334 - 1243209 + | conserved hypothetical protein; PIRIN-LIKE PROTEIN RALTA_A1208 1243658 - 1243260 - | conserved hypothetical protein, DUF35 RALTA_A1209 1244842 - 1243676 - | putative nonspecific lipid-transfer protein, thiolase sterol carrier protein, ACETYL-COA C-ACETYLTRANSFERASE RALTA_A1211 1245087 - 1245845 + | putative transcriptional Regulator, IclR family TERM 984 1245900 - 1245913 + F 100 -9.5 -5.78622 | opp_overlap 1245900 1245899, overlap 1245899 GTTCCCGTCCCAAAC GGCGC TTCG GCGCC TTTTTTTTGGCCTGG RALTA_A1212 1246041 - 1247687 + | putative ABC-type dipeptide transport system, periplasmic component RALTA_A1213 1247727 - 1248698 + | putative ABC-type dipeptide transport system, membrane component RALTA_A1214 1248760 - 1249707 + | putative ABC-type dipeptide transport system, membrane component TERM 985 1250520 - 1250571 + G 81 -18.6 -2.71924 | gap 1, overlap 1250531 GCGGCGCCACCCTGC GCGCGATTCCGGGCGCAGCGCCGGC ACT GGCGGCGCTGCCGCCGGGCT-GCGC CTTTGCGCCACGGTG TERM 986 1250531 - 1250572 + G 84 -16.5 -3.53444 | gap 1, overlap 1250520 CTGCGCGCGATTCCG GGCGCAGCGCCGGCACTGGC GGC GCTGCCGCCGG-GCTGCGCC TTTGCGCCACGGTGC TERM 987 1250637 - 1250656 + G 75 -6.4 -4.4009 | gap 1, opp_overlap 1250628 1250631, overlap 1250635 TCGAAACCACTGTGC GCGGCCGCA CGC TGCG-CTGC TTTTATCCCCTGGAG RALTA_A1215 1249718 - 1250680 + | putative ABC-type dipeptide transport system, ATP_binding component RALTA_A1216 1250677 - 1251636 + | putative ABC-type dipeptide transport system, ATP_binding component RALTA_A1217 1251802 - 1252839 + | putative Porin RALTA_A1218 1252842 - 1253690 + | putative N-formylglutamate amidohydrolase RALTA_A1219 1255142 - 1253703 - | putative lactate dehydrogenase RALTA_A1220 1255546 - 1255139 - | putative transmembrane lipoprotein RALTA_A1221 1256145 - 1255543 - | putative TRP REPRESSOR BINDING PROTEIN wrbA, Multimeric flavodoxin TERM 988 1256909 - 1256941 + G 71 -9.8 -3.79787 | gap 1, overlap 1256917 CTGGGGCTGCTGGTG GGCGCGGCGCCGGTG CTGC TGTCGGCGCTG-GCC TTTGCCTTCCTGTAC rbn 1256351 - 1257697 + | RIBONUCLEASE, putative RNase BN, TRANSMEMBRANE PROTEIN; besides tRNAs maturation, its biological role is uncertain TERM 989 1257803 - 1257769 - T 100 -20.1 -3.53012 | overlap 1257770 1257801 TGTCGGCTGTTGAAA TGCGTTGTTCCGCCC AGCAG GGGCGGAACAACGCG GTTCAAGCGCCGACA TERM 990 1257802 - 1257770 - T 100 -23.6 -2.71712 | overlap 1257769 1257801 GTCGGCTGTTGAAAT GCGTTGTTCCGCCC AGCAG GGGCGGAACAACGC GGTTCAAGCGCCGAC RALTA_A1223 1258288 - 1257869 - | conserved hypothetical protein; putative TRANSMEMBRANE PROTEIN RALTA_A1224 1259109 - 1258285 - | putative HYDROLASE; putative Carboxylesterase TERM 991 1258478 - 1258494 + g 77 -15.1 -3.15544 | opp_overlap 1258467 1258465, overlap 1258491 AACAGTGCCGGGCAG GCCGCCG TCG CGGCGGC TTCCTCGCCGTGAGC TERM 992 1258861 - 1258834 - G 79 -15.5 -3.36273 | GTGCCCGAACACGAA GGCCGGCGCCG TAACGC CGGCGGCGGCC ACCAGCGCCATGACC RALTA_A1225 1260425 - 1259109 - | O-ACETYLHOMOSERINE (THIOL)-LYASE, METHIONINE/HOMOCYSTEINE SYNTHASE TERM 993 1259377 - 1259361 - G 70 -9.4 -3.86015 | overlap 1259343 1259362 CAGGCTTTCGATAAA GCGCTG GCCGG CAGCGC GGTTGCCCTTCAGGT TERM 994 1260487 - 1260514 + H 73 -8.2 -4.05788 | opp_overlap 1260503, overlap 1260498 1260507 CGCCCGCCCACGCGC GCCGGCGGCCCG CAAA CCGGCCTCCCGC TTTACTTTGGCGGCG TERM 995 1260632 - 1260590 - H 100 -11.9 -4.4458 | gap 1, opp_overlap 1260590 1260591 1260595, overlap 1260591 GATACAGACAACAAA GTGACTGGCCCCGCCGCCGC AAGC GCCGCGGCGAGGCCC-TCAG TTTCAGCTCGGACAG TERM 996 1260631 - 1260591 - H 84 -15.4 -3.25664 | gap 1, opp_overlap 1260590 1260591 1260595, overlap 1260590 ATACAGACAACAAAG TGACTGGCCCCGCCGCCGC AAGC GCCGCGGCGAGGCCC-TCA GTTTCAGCTCGGACA TERM 997 1260595 - 1260628 + H 77 -15.1 -2.65354 | opp_overlap 1260591 1260590, overlap 1260591 1260590 AGACAACAAAGTGAC TGGCCCCGCCGCCGC AAGC GCCGCGGCGAGGCCC TCAGTTTCAGCTCGG RALTA_A1226 1260669 - 1261115 + | conserved hypothetical protein, CBS (cystathionine-beta-synthase) domains TERM 998 1262254 - 1262284 + G 80 -16 -3.14132 | TGCCAGCCAGGGCCA GGCGCCGGCCGCGC TGA GCGGCGTCGGCGCC TTCCTGGCCGCGCCG RALTA_A1227 1261205 - 1263184 + | putative 1-acylglycerol-3-phosphate O-acyltransferase, Phospholipid/glycerol acyltransferase TRANSMEMBRANE PROTEIN RALTA_A1228 1263206 - 1263940 + | conserved hypothetical protein, Metaxin-like protein aroC 1263972 - 1265135 + | chorismate synthase TERM 999 1266253 - 1266284 + G 77 -17.2 -2.5805 | overlap 1266253 CCGGCGCATACCTTC GGCCTCGCCGCCGT GGCC GCGGCGGCGGGGGC CTTCTGCGCGGTGAT TERM 1000 1266253 - 1266285 + G 87 -17 -3.30441 | gap 1, overlap 1266253 CCGGCGCATACCTTC GGC-CTCGCCGCCGT GGCC GCGGCGGCGGGGGCC TTCTGCGCGGTGATG RALTA_A1230 1265137 - 1266411 + | putative transporter, Major facilitator superfamily MFS_1 RALTA_A1231 1267470 - 1266424 - | putative outer membrane porin TERM 1001 1266683 - 1266664 - G 72 -5 -4.52589 | gap 1 GCCGGTGAGATAAAA CGTCCATGC ATC GC-TGAACG CGTGCTTCAGCCCGG RALTA_A1232 1268978 - 1267545 - | putative NAD-dependent aldehyde dehydrogenase TERM 1002 1267918 - 1267886 - G 72 -13.3 -3.14602 | opp_overlap 1267914, overlap 1267884 1267905 1267906 CGCATTCGAGGAATA GCGCCGGCGCCAGAT AGA ACCCGTCGCTGGCGC ACCGCAGACGTTCGC RALTA_A1233 1269058 - 1269711 + | putative transcriptional regulator, GntR family TERM 1003 1269737 - 1269713 - f 74 -15 -2.51187 | opp_overlap 1269711, overlap 1269701 1269712 1269703 AAACACCGCACTAAG CCGTGGCGCC GGCCG GGCGCCACGA AATCGTTCCAAACCT RALTA_A1234 1269772 - 1270758 + | conserved hypothetical protein, UPF0065 TERM 1004 1270870 - 1270851 - g 75 -10.6 -4.07568 | opp_overlap 1270842 GCGGGGCGGGCAAAA GCGCCCTG GCGA CGGGGCGC AACTGGCTGTTCGTT TERM 1005 1271798 - 1271833 + G 73 -9.6 -3.85817 | gap 1, opp_overlap 1271779, overlap 1271802 CAGATCCTGGTGCCG GCCGGGC-CCGGCCTGG GCA CCAGCCTGGAGCCTGAC TTTATCGCGGCCCAT RALTA_A1235 1270772 - 1271959 + | putative Galactonate dehydratase RALTA_A1236 1271975 - 1272700 + | putative Dimethylmenaquinone methyltransferase RALTA_A1237 1272693 - 1273514 + | hypothetical protein RALTA_A1238 1273519 - 1274409 + | putative Gluconolactonase; putative Ca2+ binding protein RALTA_A1239 1274520 - 1276265 + | hypothetical protein; putative exported protein RALTA_A1240 1277455 - 1276349 - | putative FAD dependent oxidoreductase RALTA_A1241 1278209 - 1277493 - | putative transcriptional regulator, GntR family TERM 1006 1277837 - 1277875 + g 93 -16.7 -3.85698 | gap 1, overlap 1277862 CCAGCGCGGCGCGGA TGGCGGCGAGGTCGGCGT CGGT GCGCCG-CTGCGCCGCCA TTTCTGCGCACGCGG RALTA_A1242 1278451 - 1279350 + | hypothetical protein RALTA_A1243 1279440 - 1280561 + | putative Triacylglycerol lipase putative precursor TERM 1007 1280565 - 1280621 + F 90 -20.2 -2.52464 | overlap 1280563 1280569 GACCAGCTCTGAGCG TGCGCCGCGGCTGTGGCGG-GCCTTGCT GCC GGCC-GGCGCCGCCGCAGCCGTGGTGTA TGGGTTGACGGCGCC TERM 1008 1280569 - 1280617 + F 93 -19.6 -2.94912 | overlap 1280563 1280565 AGCTCTGAGCGTGCG CCGCGGCTGTGGCGG-GCCTTGCT GCC GGCC-GGCGCCGCCGCAGCCGTGG TGTATGGGTTGACGG RALTA_A1244 1280617 - 1281594 + | lipase chaperone TERM 1009 1281651 - 1281619 - T 100 -21.5 -5.24129 | opp_overlap 1281624, overlap 1281624 CGGCCGCACAAAAAA GAAAACGGCACCGAA GAA TCCGGTGCCGTTTTC ACTTGCCAGCGCGCT TERM 1010 1281646 - 1281624 - T 100 -15.6 -5.49579 | opp_overlap 1281624, overlap 1281619 GCACAAAAAAGAAAA CGGCACCGAA GAA TCCGGTGCCG TTTTCACTTGCCAGC TERM 1011 1281624 - 1281646 + T 100 -13.4 -4.27316 | opp_overlap 1281624 1281619 GCACAAAAAAGAAAA CGGCACCGAA GAA TCCGGTGCCG TTTTCACTTGCCAGC etf 1283367 - 1281679 - | ELECTRON TRANSFER FLAVOPROTEIN-UBIQUINONE OXIDOREDUCTASE TERM 1012 1283187 - 1283206 + g 75 -10.6 -4.07568 | CGCCCGACAGGATGT GGGCGCCG GGCT CGGAGCCC TTTTCCAGCACGCAC TERM 1013 1283529 - 1283556 + H 73 -6.3 -4.323 | gap 2, opp_overlap 1283520 CGAACAGCGCCGGAA CG-GCG-TCCGGT CACG GCCGGATCGCGCG TTTTCCCTCTTTCCC TERM 1014 1283642 - 1283653 + H 100 -4.4 -5.90981 | GCAAGGATTTTTTTG GAAC GGTC GTTC TTTTTTTTGATATGC RALTA_A1246 1283665 - 1284504 + | putative deshydrogenase TERM 1015 1284586 - 1284565 - f 78 -10.1 -4.09685 | gap 1, opp_overlap 1284567 GCCCATGCGCCAAAA GCGCCGCGGG ATG CCCG-AGCGC CAACCCAGGGCTTAT TERM 1016 1284814 - 1284790 - g 100 -17.1 -3.99775 | opp_overlap 1284804, overlap 1284792 ATGGAGCAACAACAA GAGGCACGGCG CAA CGCCGTGCCGC AACACGTCGTCGATT TERM 1017 1284812 - 1284792 - g 95 -18.3 -3.58505 | opp_overlap 1284804, overlap 1284790 GGAGCAACAACAAGA GGCACGGCG CAA CGCCGTGCC GCAACACGTCGTCGA RALTA_A1247 1284775 - 1285377 + | putative Tripartite ATP-independent periplasmic transporter, DctQ component RALTA_A1248 1285374 - 1286678 + | putative Tripartite ATP-independent periplasmic transporter, DctM subunit RALTA_A1249 1286743 - 1287771 + | putative Tripartite ATP-independent periplasmic transporter, DctP component TERM 1018 1287781 - 1287806 + F 95 -20.5 -3.17392 | opp_overlap 1287776 CGCTAAGTCATGAGG CAGGCCCGCCA GTGT TGGCGGGCCTG TTGCATTGGAGGCTG RALTA_A1250 1287824 - 1288225 + | putative Thioesterase/thiol ester dehydrase-isomerase RALTA_A1251 1288915 - 1288238 - | putative TRANSCRIPTIONAL REGULATOR; LuxR family atoD1 1288965 - 1289666 + | acetyl-CoA:acetoacetyl-CoA transferase, alpha subunit TERM 1019 1289720 - 1289700 - g 71 -9.6 -3.75665 | opp_overlap 1289710, overlap 1289701 GGACACGTGACGAAA TGGCCGCG CGCGC CGCGGCCG AGCTGCAGGACGGTT atoA1 1289678 - 1290316 + | acetyl-CoA:acetoacetyl-CoA transferase, beta subunit TERM 1020 1290343 - 1290369 + F 100 -23.8 -5.28481 | GCCATGGCCTGACGA GCCCTGTGGCGC ATT GCGCCACAGGGC TTTTTTCATTGGATG RALTA_A1254 1290522 - 1290902 + | putative lipoprotein, COG4273 TERM 1021 1290902 - 1290958 + T 100 -19.2 -3.7941 | overlap 1290947 CCTCGCACAGGGGTA GCGGATGGCCGGATGCGCCGCGGCGC ATCCG GCGCGGCGGCACGTCAGGCCGCCGGC TTGTTGTGGCGGCTG RALTA_A1255 1291440 - 1290946 - | conserved hypothetical protein, DUF411; putative exported protein TERM 1022 1291409 - 1291355 - G 73 -16.5 -2.52464 | gap 2 GCCTGCGCGAACGCA TCGGC-CGCGGGC-CCCAGCACGCC AACGGCG AGCGTGCCGAGCGCCAGCGCGCCGA GGGTGCCGAGAAAAC RALTA_A1256 1292256 - 1291480 - | beta-hydroxybutyrate dehydrogenase phaY2 1292459 - 1293340 + | D-(-)-3-hydroxybutyrate oligomer hydrolase TERM 1023 1293336 - 1293360 + F 71 -11.4 -3.41229 | overlap 1293353 AGTTCTTTACCGGCG CCTGACCGCA CGCGT TGCGGCCAGG TTGTCATCCGGCTGT TERM 1024 1293353 - 1293374 + F 77 -4.3 -4.87786 | overlap 1293336 TGACCGCACGCGTTG CGGCCAGGT TGTC ATCCGGCTG TTTTTATCGAGTTAC RALTA_A1258 1293398 - 1293760 + | putative single-stranded mRNA endonuclease TERM 1025 1294444 - 1294432 - g 72 -6.2 -4.25104 | GCTGCTGGATGAAAA GCGC ATCGA GCGC GAAGGCTATATCGCC TERM 1026 1295254 - 1295275 + G 70 -15.1 -2.71144 | CCTCGCCAGCAGCCG CGCGCGCGC CAAG GTGCGCGCG TGGTTCAACGCGCTG TERM 1027 1295559 - 1295530 - g 78 -12.1 -3.71848 | gap 1, opp_overlap 1295531 1295532, overlap 1295532 CGCCGTCACCAAGAA GAGCCGCGCCACCA GCG TGGC-GCGCGGCGC CAAGAGCGGCGTGCT TERM 1028 1295557 - 1295532 - g 76 -13.3 -3.44284 | gap 1, opp_overlap 1295531 1295532, overlap 1295530 CCGTCACCAAGAAGA GCCGCGCCACCA GCG TGGC-GCGCGGC GCCAAGAGCGGCGTG relA 1293776 - 1296004 + | (p)ppGpp synthetase I (GTP pyrophosphokinase) TERM 1029 1296267 - 1296282 + F 100 -11.8 -5.86965 | opp_overlap 1296267 TTTGACAAAGAGAAA CGCGGC CTTG GCCGCG TTTTTTTTCGTCCGT TERM 1030 1296282 - 1296267 - f 100 -11.8 -4.40003 | opp_overlap 1296267 TTTGACAAAGAGAAA CGCGGC CTTG GCCGCG TTTTTTTTCGTCCGT TERM 1031 1296955 - 1296928 - g 71 -11.3 -3.56325 | opp_overlap 1296952, overlap 1296925 1296939 GGGCGAGAAGTACAA GGCCGAGATCA TCGGCT CGATCCCGGCC GACCAGGAAATCGGC TERM 1032 1297154 - 1297135 - g 75 -5.6 -4.56597 | overlap 1297144 GGCGTGGGCCAAAAA GGAAGACC AGGA GGCCTACC TGCACATGCTTGAGG TERM 1033 1298065 - 1298041 - g 83 -12.8 -4.07885 | CATCCTGCTCGAAAA CCACGCCGGC GCGCT GCCGGCCTGG CTGGCCCCGGACCAG thrS 1296461 - 1298368 + | threonine tRNA synthetase infC 1298515 - 1298937 + | Translation initiation factor IF-3 TERM 1034 1298955 - 1298979 + F 74 -12.1 -3.39895 | opp_overlap 1298938, overlap 1298957 CTTGCGCGGTGCAGC GGCCGGGATGC CAC GCATCCCGGTG TTGCTTCGTGCGGAA TERM 1035 1298957 - 1298977 + F 91 -16.9 -3.27029 | opp_overlap 1298938, overlap 1298955 TGCGCGGTGCAGCGG CCGGGATGC CAC GCATCCCGG TGTTGCTTCGTGCGG TERM 1036 1299143 - 1299130 - g 84 -8.1 -4.78753 | opp_overlap 1299130, overlap 1299125 TGAAGACGAAGAAAA GCGCT TCCA AGCGC TTTACTGCCCGTCCG rpmI 1299105 - 1299302 + | 50S ribosomal subunit protein A TERM 1037 1299506 - 1299492 - g 70 -8.5 -3.9461 | opp_overlap 1299490 TCGCCGCAACAAGAA GCGCG TGTTC CGCGC CCTGTGGATTGCGCG rplT 1299331 - 1299687 + | 50S ribosomal subunit protein L20, also posttranslational autoregulator TERM 1038 1299768 - 1299789 + F 100 -13 -5.29846 | opp_overlap 1299768 CAAGGTCCGCTGAAA CGGGGCTC CTCACC GAGCCCCG TTTTTATTTGCGGTT TERM 1039 1299789 - 1299768 - f 76 -13 -3.53761 | opp_overlap 1299768 CAAGGTCCGCTGAAA CGGGGCTC CTCACC GAGCCCCG TTTTTATTTGCGGTT TERM 1040 1299900 - 1299874 - f 74 -14.5 -2.53263 | gap 1 CGTAGTGCCAACCCA CGTCGGCCAGGA TGCT TCC-GGCCGACG CCAGAACACTCCACG TERM 1041 1300026 - 1300012 - g 82 -4.2 -5.0925 | CTGGAAAACGAAAAA GCCC GCTTCCT GGGC AAGACCGGCGCGCTG pheS 1299925 - 1300956 + | phenylalanine tRNA synthetase, alpha-subunit pheT 1301017 - 1303464 + | phenylalanine tRNA synthetase, beta-subunit TERM 1042 1303515 - 1303498 - f 82 -5.5 -4.93296 | overlap 1303499 1303500 GGAGCACGATAAAAA GGGCG CCCGGGCT CGCCC CGGGCGGATCGCCAG ihfA 1303552 - 1303962 + | integration host factor (IHF), alpha subunit RALTA_A1268 1304080 - 1304505 + | putative TRANSCRIPTIONal REGULATOR, MerR family TERM 1043 1304671 - 1304647 - T 100 -17.9 -4.41114 | opp_overlap 1304647 CGACCAGACAAGAAA CCCGCTTGGCA AAT CGCCAAGCGGG TTTTTTTTATTGCCG TERM 1044 1304647 - 1304671 + T 100 -17.2 -6.09888 | opp_overlap 1304647 CGACCAGACAAGAAA CCCGCTTGGC AAATC GCCAAGCGGG TTTTTTTTATTGCCG TERM 1045 1304756 - 1304767 + T 73 -3.6 -4.75174 | overlap 1304750 1304749 GTGTGCGAAGCCATG CGGT CGTG GCCG TTTTTCGATTGCGTC RALTA_A1270 1305214 - 1304990 - | hypothetical protein TERM 1046 1305059 - 1305088 + g 72 -4.1 -4.65895 | overlap 1305061 GCCGTCGCGGCCGTG GACGAGCAGTTCC GCGT GGAGCTGCCGGGC TTTTTCGGTGCCCGC TERM 1047 1305438 - 1305470 + r 100 -12 -5.60993 | gap 2 CCCGGCTGTACTCAC CAGCCCGCCCGCATGC TCC GCC-GCG-GCGGGCTG TTTTTTTATGCGGGC RALTA_A1272 1305772 - 1305512 - | hypothetical protein RALTA_A1273 1305958 - 1306344 + | putative lipoprotein TERM 1048 1306766 - 1306734 - g 72 -8.9 -4.08064 | AACGTCCGCCGAAAA GCCGGCGCTCAAGCG GGC CGCCAGGGCACAGGC AAGGGCACCAGCGCC RALTA_A1274 1306501 - 1306821 + | hypothetical protein RALTA_A1275 1306917 - 1307258 + | hypothetical protein RALTA_A1276 1312133 - 1307280 - | putative NAD-glutamate dehydrogenase TERM 1049 1312239 - 1312203 - R 75 -4.3 -4.74132 | gap 1, overlap 1312204 1312225 ATACTTTAGGAAAAA TCCGAGTACCCGGCGC AACAAA GTGGCGGGTAC-CGGC GCTGACAGGGGAGGG RALTA_A1277 1312938 - 1312312 - | hypothetical protein ygfH 1313252 - 1314769 + | propionyl-CoA:succinate-CoA transferase TERM 1050 1314815 - 1314796 - T 100 -15 -5.26119 | opp_overlap 1314796 1314798 1314812 CCGGCAAAAAGAAAA CAGCCCGC TCGC GCGGGCTG TCTTGCCAGACGAAG TERM 1051 1314796 - 1314815 + T 78 -15 -3.01712 | opp_overlap 1314796, overlap 1314798 1314812 CCGGCAAAAAGAAAA CAGCCCGC TCGC GCGGGCTG TCTTGCCAGACGAAG RALTA_A1279 1315196 - 1314837 - | conserved hypothetical protein; putative exported protein TERM 1052 1315048 - 1315070 + g 76 -7.6 -4.29508 | overlap 1315046 AACTTGCCCGACTTG GCCGCGCC CTGGTTC GGCCCGGC TTTCTTGGTGTGGCT TERM 1053 1315462 - 1315483 + r 76 -11.5 -3.75153 | opp_overlap 1315463, overlap 1315463 CCGCCTCATAAAAAA ACCGGCTGC CGAG GCAGCCGGC TTTACGTTCCGGCGG TERM 1054 1315463 - 1315482 + r 77 -15 -2.84878 | opp_overlap 1315463, overlap 1315462 CGCCTCATAAAAAAA CCGGCTGC CGAG GCAGCCGG CTTTACGTTCCGGCG TERM 1055 1315482 - 1315463 - R 100 -15 -5.60993 | opp_overlap 1315463 1315462 CGCCTCATAAAAAAA CCGGCTGC CGAG GCAGCCGG CTTTACGTTCCGGCG RALTA_A1280 1316501 - 1315521 - | conserved hypothetical protein, UPF0065 TERM 1056 1316258 - 1316295 + g 75 -10.3 -4.07568 | overlap 1316259 GCGCGGACTTGGCCA GCGCGTCGGCGCCGATG GCGC CGCCGCCGCCGCCGCGG TTTTCCACCACCACC TERM 1057 1316501 - 1316513 + g 72 -3.3 -4.58585 | overlap 1316502 TAAGGACTGCTTTCA AGGAG GGC CTCCA TTTCTTCTTTCACTG TERM 1058 1316849 - 1316817 - g 74 -14.4 -3.34984 | gap 1, opp_overlap 1316818 1316823, overlap 1316823 AGACGTGCGAAAAAG CA-AAAAGCCGGAAG CAAG CTTCCGGCTTTTCTG AATTCACTGGTGGGG TERM 1059 1316842 - 1316823 - g 100 -13.6 -5.18355 | opp_overlap 1316823 1316818, overlap 1316817 GCGAAAAAGCAAAAA GCCGGAAG CAAG CTTCCGGC TTTTCTGAATTCACT TERM 1060 1316823 - 1316842 + G 100 -13.6 -4.47551 | opp_overlap 1316817 1316823, overlap 1316818 GCGAAAAAGCAAAAA GCCGGAAG CAAG CTTCCGGC TTTTCTGAATTCACT RALTA_A1281 1316611 - 1316850 + | hypothetical protein RALTA_A1282 1317075 - 1317983 + | putative transcriptional regulator, LysR family RALTA_A1283 1318128 - 1319516 + | putative HYDROXY-ATRAZINE ETHYL AMINO HYDROLASE (atzB) TERM 1061 1319614 - 1319579 - f 87 -19.2 -2.71712 | opp_overlap 1319584, overlap 1319584 CCGGGCCGTCCAAAG CAAAAGGCCGGAAGCA TTGC TGCTTCCGGCCTTTTT GTATTCGCTGGTGGG TERM 1062 1319609 - 1319584 - f 100 -19.1 -4.54727 | opp_overlap 1319584, overlap 1319579 CCGTCCAAAGCAAAA GGCCGGAAGCA TTGC TGCTTCCGGCC TTTTTGTATTCGCTG TERM 1063 1319584 - 1319609 + F 100 -19.1 -5.10767 | opp_overlap 1319584 1319579 CCGTCCAAAGCAAAA GGCCGGAAGCA TTGC TGCTTCCGGCC TTTTTGTATTCGCTG RALTA_A1284 1319884 - 1320189 + | hypothetical protein TERM 1064 1320378 - 1320424 + T 83 -15.1 -3.14132 | CGCTCCGCTCAAGGC TGCGCGGACGCTGCC-GGCGCTG CCG TGGCGCCCGGCCGCGAC-GCGCA TTCCTCGAAGAGGCG RALTA_A1285 1322170 - 1320371 - | putative Sulfate transporter RALTA_A1286 1322808 - 1322185 - | putative TRANSCRIPTIONal REGULATOR, MarR xthA 1323670 - 1322840 - | EXODEOXYRIBONUCLEASE III TERM 1065 1323526 - 1323560 + g 77 -15.7 -3.13403 | gap 1, overlap 1323524 GCAGCTTCAGTTCCT GCAGGCACAGCGCGTC GATC GGCGCGCCG-GCCTGC TCTTGCTCGGCCAGC prlC 1325751 - 1323667 - | oligopeptidase A TERM 1066 1323778 - 1323736 - G 72 -13.5 -3.18681 | gap 2, overlap 1323774 GCGGAACGCCACGAA CGAG-TCC-ATCGCCGGGCGG CTG CCGCCCACCGACAGGATCTCG CGCTGGTAGCGCGCG folD 1326716 - 1325865 - | bifunctional: 5,10-methylene-tetrahydrofolate dehydrogenase; 5,10-methylene-tetrahydrofolate cyclohydrolase TERM 1067 1326619 - 1326575 - G 78 -16.4 -2.98823 | gap 1, opp_overlap 1326575 1326606 TGTTGCGCACATAGA CCTGGCTGGCCG-GGTCTTCG CCCA CCAGGACCACGGCCAGCCCGG GCTGGTGGCCGCGTT TERM 1068 1326850 - 1326797 - H 100 -16.7 -4.05714 | gap 1 AGGCGGAATTATAAA GGGTGCGCGCTGGCTGTCGCACGG AGCTTGA CCGC-CGACAGCCATCGCGCTGCC CCGGTACTGGTAGCA RALTA_A1290 1326874 - 1327554 + | conserved hypothetical protein, COG3235; putative membrane protein RALTA_A1291 1328283 - 1327651 - | putative RESPONSE REGULATOR RALTA_A1292 1331487 - 1328449 - | putative sensor hybrid histidine kinase TERM 1069 1328736 - 1328782 + gH 73 -10.7 -3.62522 | gap 1 CATGCAGCCGCACCA CGCCGCCGGCGCGCATCGCCGG CAGC CCGGCCATG-GCCTCGACCGCG TTCTTGAGCAGGTTC TERM 1070 1330882 - 1330839 - GH 74 -13 -3.28791 | gap 1, opp_overlap 1330865, overlap 1330825 1330863 AGCTGGTGGCCACAA GGTTGCGCCAGCGCAGCCACC ACA GGCCGC-GCGGCGGCGCCACC GGGACGCCGTCGTCG TERM 1071 1331163 - 1331137 - GH 74 -9.3 -3.922 | opp_overlap 1331160, overlap 1331125 1331138 AAAGCGCCAATGAAA TCCCGGCGCCG CATGC CGGCGCCGCCA GGGCGGCGACACGCG pdhA 1331486 - 1334173 + | pyruvate dehydrogenase, decarboxylase subunit, thiamin-binding pdhB 1334341 - 1336029 + | dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex RALTA_A1296 1336102 - 1336764 + | putative hydrolase, proteasome hslV type peptidase domain pdhL 1336798 - 1338585 + | dihydrolipoamide dehydrogenase, FAD/NAD(P)-binding, component of the 2-oxoglutarate dehydrogenase and the pyruvate dehydrogenase complexes TERM 1072 1338598 - 1338638 + T 87 -17 -2.92667 | gap 1, opp_overlap 1338609 1338610, overlap 1338606 1338610 TGACGCGCTGCCCGC CGCGATGACAAGGCCCGCC TGAT GGCGGGCTTTGTT-TTGCG TGGTTTCGCAATTAA TERM 1073 1338606 - 1338631 + T 100 -16.9 -4.26079 | opp_overlap 1338609 1338610, overlap 1338598 1338610 TGCCCGCCGCGATGA CAAGGCCCGCC TGAT GGCGGGCTTTG TTTTGCGTGGTTTCG TERM 1074 1338610 - 1338627 + T 100 -14.1 -4.6951 | opp_overlap 1338609 1338610, overlap 1338606 1338598 CGCCGCGATGACAAG GCCCGCC TGAT GGCGGGC TTTGTTTTGCGTGGT TERM 1075 1338627 - 1338610 - T 71 -14.1 -2.64099 | opp_overlap 1338610 1338606 1338598, overlap 1338609 CGCCGCGATGACAAG GCCCGCC TGAT GGCGGGC TTTGTTTTGCGTGGT TERM 1076 1338747 - 1338766 + T 81 -13.6 -3.58536 | opp_overlap 1338747 GAGGGCCAAAAAAAA CCCGACCT GTAG AGGTCGGG TTTAACGATACCTTT TERM 1077 1338766 - 1338747 - T 100 -13.6 -5.76949 | opp_overlap 1338747 GAGGGCCAAAAAAAA CCCGACCT GTAG AGGTCGGG TTTAACGATACCTTT TERM 1078 1338905 - 1338926 + T 88 -17.3 -3.03243 | opp_overlap 1338909 GATGGGCTTTGCCAA CGGACCGGC CGCA GCCGGTCCG TCTTCAACACTGGCT phaP1 1339521 - 1338943 - | phasin; polyhydroxyalkanoate synthesis and granule formation regulator/factor TERM 1079 1339722 - 1339700 - H 71 -9.2 -3.6849 | opp_overlap 1339694, overlap 1339702 ATCCAATGTCAAGAA GATTTTGTGC GTT GCACAAAAAC AAGGGCGGAGGCACT TERM 1080 1340434 - 1340422 - g 70 -3.4 -4.42386 | overlap 1340428 GCTGCACGGAGAAAA GAAC TACCC GTTC CGCAAGGAAGCGAGC RALTA_A1299 1339883 - 1340827 + | Histone deacetylase TERM 1081 1341324 - 1341312 - g 70 -9.1 -3.90744 | GGTGGTGGCAAACAA GCTCG GCA CGAGC GGGTTGACGCCGGCC RALTA_A1300 1340824 - 1341750 + | conserved hypothetical protein; putative TRANSMEMBRANE PROTEIN RALTA_A1301 1341844 - 1342302 + | putative Thioesterase/thiol ester dehydrase-isomerase RALTA_A1302 1342328 - 1343041 + | putative Nitroreductase TERM 1082 1343174 - 1343193 + F 78 -6.4 -4.59109 | overlap 1343177 CGCGAGTTCGATAGC GCACGTGA TGCA TCACGTAC TTTTTCCGCAATGTG RALTA_A1303 1343395 - 1344531 + | putative D-Alanyl-D-alanine carboxypeptidase TERM 1083 1344556 - 1344574 + T 100 -13.8 -5.61881 | opp_overlap 1344556 CCAGACCGGAAAAAA CGCGCCGT CCT GCGGCGCG TTTTTCTTTTTGGCG TERM 1084 1344574 - 1344556 - T 100 -13.1 -5.07567 | opp_overlap 1344556 CCAGACCGGAAAAAA CGCGCCG TCCTG CGGCGCG TTTTTCTTTTTGGCG RALTA_A1304 1346014 - 1344599 - | putative FAD linked oxidase RALTA_A1305 1346773 - 1346027 - | putative transcriptional regulator, GntR family TERM 1085 1346078 - 1346111 + g 73 -7.4 -4.11216 | gap 3, overlap 1346074 CGCTGTGTCGACCCG CGCGCGCAGCGCAAGCC CGA GGCG-GCGC-GCG-GCG TTTTGCAGGTGCGCC TERM 1086 1346684 - 1346709 + g 74 -11.1 -3.70902 | gap 1, overlap 1346695 1346697 CCGGCCGGTCGGCAG GCGGCTGCCGAC GGG GTAGGC-GCCGC TTTCGATATCGGCGC TERM 1087 1346886 - 1346856 - R 100 -21.9 -4.13767 | opp_overlap 1346866 CGGCCCACGTTAAAA CGCGCGGACTGCC TTGCC GGCAGCCCGCGCG TTGGCGGCGGCTTGC RALTA_A1306 1347697 - 1346912 - | putative TRANSCRIPTIONal REGULATOR, IclR family TERM 1088 1347719 - 1347730 + H 80 -5.8 -4.72846 | overlap 1347717 1347708 GAAACGTAGAAATGT TGCC TTGC GGCA TTTTTAAGTGTCTGC RALTA_A1307 1347935 - 1348660 + | putative oxidoreductase TERM 1089 1348750 - 1348716 - g 72 -13.4 -3.19668 | overlap 1348734 CAGCATGGAATTCAA GGCGCGCGCCGGGCAG AAG CTGGCCGACCAGCGCC TGCAGCAAAACCTGA RALTA_A1308 1348690 - 1350102 + | putative oxido reductase, 4Fe-4S ferredoxin, iron-sulfur binding RALTA_A1309 1350099 - 1350368 + | hypothetical protein RALTA_A1310 1352894 - 1350522 - | putative nucleic acid ATP-dependent helicase TERM 1090 1352579 - 1352597 + g 71 -3 -4.58395 | overlap 1352574 1352581 1352581 1352588 ATCGGTTGCCGCAGT CACCGCAT TTG ATGCGCGG TTTTTCGCAGATACC TERM 1091 1353276 - 1353257 - R 100 -15 -5.63517 | opp_overlap 1353257 GCGCCAAACAAAAAA CGGGGAGC CGAA GCTCCCCG TTTTTCTTGCCAGCG TERM 1092 1353257 - 1353276 + r 100 -15 -5.06414 | opp_overlap 1353257 GCGCCAAACAAAAAA CGGGGAGC CGAA GCTCCCCG TTTTTCTTGCCAGCG RALTA_A1311 1354089 - 1353295 - | putative ABC transporter, ATP-BINDING component RALTA_A1312 1354987 - 1354091 - | putative ABC transporter, membrane component RALTA_A1313 1356145 - 1355168 - | putative ABC-type transporter, periplasmic component TERM 1093 1356210 - 1356262 + r 76 -14 -3.14132 | gap 2 GGTTCGGTCCGCCGT CCTGGCGCGCGCG-CCGG-CTGGCGC ACG GTGCCGGTCCGGGCGGGCGCGGCGGC TTCCTGCGGCGGGAG TERM 1094 1356627 - 1356584 - R 71 -13.6 -2.52896 | CGACCGGGGAATTCA GCCGCGCAGCGCCGCGGCGC ACTC GCGCACCAGCGCCGGGCCGC GGTAGATCAGGCCGC pyrD 1357615 - 1356581 - | dihydro-orotate oxidase, FMN-linked RALTA_A1315 1358522 - 1357725 - | Putative arginyl-tRNA--protein transferase aat 1359354 - 1358602 - | leucyl, phenylalanyl-tRNA-protein transferase RALTA_A1317 1359979 - 1359395 - | putative nucleoside diphosphate hydrolase (NUDIX) TERM 1095 1360127 - 1360141 + r 86 -12.8 -4.0641 | opp_overlap 1360127, overlap 1360128 CACCAAAACAAAAAA CCCGCC GGA GGCGGG TTTGTCTGCGTCGAC TERM 1096 1360141 - 1360127 - R 100 -12.8 -5.83211 | opp_overlap 1360127 1360128 CACCAAAACAAAAAA CCCGCC GGA GGCGGG TTTGTCTGCGTCGAC RALTA_A1319 1361133 - 1360381 - | hypothetical protein RALTA_A1320 1361482 - 1361093 - | hypothetical protein bdxA 1362837 - 1361593 - | Benzoyl-CoA oxygenase component A TERM 1097 1362512 - 1362543 + g 85 -18 -3.15249 | gap 1 GCGCCGTCGGCCGCG GCCGTG-CCGCCGCC CGT GGTGGCGGGCGCGGC TTCGTCCGCGATGTC bdxB 1364274 - 1362850 - | Benzoyl-CoA oxygenase component B RALTA_A1323 1366003 - 1364306 - | putative Enoyl-CoA hydratase/isomerase RALTA_A1324 1367050 - 1366103 - | putative transcriptional regulator, ATP-binding kinase, Helix-turn-helix motif, Shikimate kinase motif TERM 1098 1367575 - 1367587 + G 73 -7.7 -4.16681 | opp_overlap 1367553, overlap 1367546 TGCTGCTGTGCGCGC TCGAC ACG GTCGA TTTTCCGGTGGTGTT RALTA_A1325 1367331 - 1368938 + | Benzoate-CoA ligase RALTA_A1326 1368952 - 1369782 + | putative HYDROLASE RALTA_A1327 1369904 - 1371109 + | putative ABC-type branched-chain amino acid transport systems, periplasmic component RALTA_A1328 1371212 - 1372078 + | putative ABC-type branched-chain amino acid transport systems, membrane component RALTA_A1329 1372080 - 1373159 + | putative ABC-type branched-chain amino acid transport systems, membrane component RALTA_A1330 1373156 - 1373926 + | putative ABC-type branched-chain amino acid transport systems, ATP binding component RALTA_A1331 1373923 - 1374663 + | putative ABC-type branched-chain amino acid transport systems, ATP binding component TERM 1099 1374707 - 1374737 + F 73 -6.9 -4.34402 | gap 1, opp_overlap 1374687, overlap 1374710 GTTGTTGCCCTGCCG CAACGGCA-CTTGC GGGC GCAAGGTGTCGCTG TTTTGCTCTGCCAGG RALTA_A1332 1374986 - 1376884 + | putative POTASSIUM UPTAKE transporter (kup) TERM 1100 1376929 - 1376963 + F 100 -12.1 -4.86731 | gap 1 CCGTCCGCTCTGCCA GCCCCCGGGCCTGC GCCGCCAG GC-GTCCCGGGGGC TTTTCTTTGGGCGGC RALTA_A1334 1377338 - 1377727 + | conserved hypothetical protein; putative exported protein RALTA_A1335 1377830 - 1378930 + | putative Prolyl aminopeptidase, LuxR DNA binding domain C_term TERM 1101 1379087 - 1379036 - f 73 -13.1 -3.14344 | gap 3, opp_overlap 1379021, overlap 1379013 1379084 CAGCCGCTGCAGCAA CGCGCTGTGGCTTCCCGGCCAGCGGC GCC ACCGATGGCAGGGAA-CC-CAG-GCG TCCGTGCGCCTTCCC RALTA_A1336 1379127 - 1379567 + | Heat shock chaperone, Hsp20 family RALTA_A1337 1379583 - 1380005 + | Heat shock chaperone, Hsp20 family TERM 1102 1380018 - 1380051 + T 100 -26.9 -3.68351 | opp_overlap 1380024 TAGGCGTGCCCGGAT GCAGAACGGCGGTGC CCAG GCACCGCCGTTCTGC TTTGCATGGTCCGCG TERM 1103 1380045 - 1380024 - T 91 -17.3 -3.35679 | opp_overlap 1380018 TGCCCGGATGCAGAA CGGCGGTGC CCAG GCACCGCCG TTCTGCTTTGCATGG RALTA_A1338 1381127 - 1380072 - | putative NAD-dependent epimerase/dehydratase; putative formyltransferase RALTA_A1339 1382933 - 1381131 - | putative Glycosyl transferase, family 39 TERM 1104 1381184 - 1381160 - G 75 -9.9 -3.98804 | GGAAATCGGAAACAA GCCGGCGCG TCTGGCG CTCGCCGGC CAAGGCAAAGTTGGA TERM 1105 1381919 - 1381907 - G 86 -3.3 -5.2015 | overlap 1381908 1381909 TGAAGAACACAAAAA TGGCC AGC GCCCA CAGGCCGGTCATCAG TERM 1106 1383517 - 1383477 - g 85 -18.2 -3.14132 | gap 1 GTCGCGCTCGATGAA CTGGCCGCGCGGCTGCGCG CTGT CACGC-GCCGCGCGGCGGG GATGTCCGCCCCGGT RALTA_A1340 1383156 - 1383827 + | putative response regulator, CheY family TERM 1107 1384628 - 1384587 - g 71 -10.7 -3.57263 | gap 1, overlap 1384588 1384616 AGGCGCAGTGGGAAA TCGCCGAGCGCTCGCCCGAC CGC GACGAACGCGCGCT-GGCGC GGGCCAATGTCGCCG TERM 1108 1384975 - 1385020 + G 78 -6.6 -4.56597 | gap 1, opp_overlap 1384959, overlap 1384961 1384975 1384976 CACCGTGCGCGACCA G-GGTCCCGGCGTCGCGCCCG AATTG CTGGCGCGCCTCGGTGACCGC TTTTTCCGCGGCGGC RALTA_A1341 1383824 - 1385188 + | putative sensor histidine kinase TERM 1109 1385254 - 1385227 - T 100 -24.2 -4.39568 | AGCCAGAGACGAAAA CGCCCCGCACGG TTTC CCGTGCGGGGCG CTGTGCCCGAGGCAG tex 1387621 - 1385276 - | transcriptional accessory protein TERM 1110 1387231 - 1387280 + g 89 -19.3 -3.29144 | gap 1, opp_overlap 1387217 ACGCCAGCGCCAGCG GCTCCAGC-CCGCATTCGCGCGCA ATC TGGGCGCGGGTGCGGCGCTTGGGC TTGTAGGGCAGGTAG TERM 1111 1387928 - 1387986 + G 70 -15.1 -2.71712 | overlap 1387929 GCTGCGCTGATGCCG CTGCGCGCGGCA-CAGGCGCAGGCCTCGG CCC CCGCCGCC-GCACCCGCTGCCGCGCGCGA CTTTGCCGCCGAGCG TERM 1112 1388309 - 1388290 - g 83 -4.9 -4.91109 | overlap 1388293 1388300 1388302 1388305 GGCGTACGAGAAAAA GCAGCAG GAACAG CAGCTGC GCGACGCGCAGCGCC TERM 1113 1388562 - 1388539 - g 77 -15.2 -3.17527 | opp_overlap 1388530, overlap 1388509 1388537 CAGGGAGCAGCAACA GGGCCCGGCG TCGG CGCCGCGCCC GTTCGGCTTCTGAGC RALTA_A1343 1387787 - 1388575 + | conserved hypothetical protein; putative exported protein RALTA_A1344 1388608 - 1388811 + | hypothetical protein TERM 1114 1389364 - 1389412 + G 77 -11 -3.85698 | CGCGCAGGCTGGCGG GCGCCTGGCCTCGCGCCAG-GATG CGG CGTGGCT-GCGCGAGATCGGGCGC TTTATCAAGGAGACC RALTA_A1345 1388837 - 1391056 + | putative ATP-dependent helicase TERM 1115 1391112 - 1391078 - T 83 -12.3 -4.07568 | gap 1, opp_overlap 1391083, overlap 1391083 CGGGCCCCTGCAAAA GAAAACGGGACG-GTC ATCC GACACGTCCCGTTTTT TTAGCGCTGCCGGCG TERM 1116 1391083 - 1391107 + T 100 -12.2 -5.42259 | gap 1, opp_overlap 1391078 1391083 CCCTGCAAAAGAAAA CGGGACG-GTC ATCC GACACGTCCCG TTTTTTTAGCGCTGC TERM 1117 1391107 - 1391083 - T 100 -12.2 -5.07652 | gap 1, opp_overlap 1391083, overlap 1391078 CCCTGCAAAAGAAAA CGGGACG-GTC ATCC GACACGTCCCG TTTTTTTAGCGCTGC RALTA_A1346 1391966 - 1391136 - | putative lipoprotein, ComL family, tetratricopeptide repeats (TPR) domain TERM 1118 1391928 - 1391945 + g 71 -10.5 -3.81951 | AACCGCTCCAATTGT CGTGCGC CAGC GCGCGCG TTTCATGCTCTGCAA rluD 1391984 - 1393240 + | 23S rRNA pseudouridine synthase RALTA_A1348 1393224 - 1394027 + | conserved hypothetical protein, COG1496 RALTA_A1349 1394318 - 1394091 - | conserved hypothetical protein; putative transmembrane protein TERM 1119 1394253 - 1394235 - G 70 -12.4 -3.26545 | opp_overlap 1394233 CCCATACATCAGGAA GGTGGCGA CGC CCGCCACC ACGTTGTGCTCGGTG TERM 1120 1394465 - 1394490 + H 86 -8.3 -4.56597 | overlap 1394466 CAATGGCCTCGAATG TCTCGGAATCG CTGA CGATTCCCAGG TTTTTCCGGCAAGCA TERM 1121 1394628 - 1394600 - H 100 -17.3 -3.551 | overlap 1394601 TCGGAATGGATACAA GCCCCGGCCGCGC ATT GCGCGGCCCGGGT TCCAGGCCAGTTCCA TERM 1122 1394627 - 1394601 - H 91 -20.8 -2.72739 | overlap 1394600 CGGAATGGATACAAG CCCCGGCCGCGC ATT GCGCGGCCCGGG TTCCAGGCCAGTTCC phaC1 1394786 - 1396567 + | Polyhydroxyalkanoic acid synthase (Poly-beta-hydroxybutyrate polymerase) TERM 1123 1396566 - 1396622 + F 71 -11.4 -3.46068 | gap 2, overlap 1396598 TCAAAGCCAAGGCTT GATGCCCGCGCGTCCGCCGGCGTGCCCC CGC GTGG-GCGCCGGCAGAC-TGCGGGTCCC TGTTTCCATTGAGAG phaA 1396647 - 1397828 + | Acetyl-CoA acetyltransferase (beta-ketothiolase) phaB1 1397900 - 1398640 + | Acetoacetyl-CoA reductase TERM 1124 1398730 - 1398760 + F 86 -13.2 -4.10161 | overlap 1398733 CAATGTTTCGCCGCG GGTTTCGCGGGCCG GCA TGGCCCGCGAATCA TTTTCGGGCGTACTG TERM 1125 1398733 - 1398757 + F 90 -17.9 -3.08508 | overlap 1398730 TGTTTCGCCGCGGGT TTCGCGGGCCG GCA TGGCCCGCGAA TCATTTTCGGGCGTA TERM 1126 1398793 - 1398806 + F 91 -9.5 -4.41494 | overlap 1398779 1398778 TCGGCGCCGCGATGG CCCGG TTTA CCGGG TTTTCCTTAAGCCTC TERM 1127 1399092 - 1399080 - g 87 -4.7 -5.1861 | GCCACGACCAAAAAA GGCGC AGA GCGAC TGATCAAAAAGTATC phaR 1399062 - 1399613 + | Polyhydroxyalkanoate synthesis repressor PhaR TERM 1128 1399647 - 1399620 - T 83 -16.3 -2.8293 | gap 1, overlap 1399613 1399617 1399610 AAGAAGTAGCAACCA GCGCCGGCGGGC CGGGC GCCCGCCG-CGC ATCAGCACCCGGGGC RALTA_A1355 1399961 - 1399671 - | putative transcriptional regulator, lambda repressor-like DNA-binding domain RALTA_A1356 1399992 - 1400276 + | hypothetical protein TERM 1129 1400296 - 1400266 - f 72 -14.1 -2.79183 | gap 1, opp_overlap 1400261, overlap 1400271 CGGATGCTGAGCATA CCACACC-GTAGCC TCTA GGCTACAGGCGTGG AATCATCGATTCCCG dusC 1400487 - 1401443 + | tRNA-dihydrouridine synthase C RALTA_A1358 1401570 - 1402982 + | putative 2-methylthioadenine synthetase bktB 1403098 - 1404282 + | acetyl-CoA acetyltransferase, thiolase RALTA_A1360 1404297 - 1404914 + | conserved hypothetical protein; putative exported protein TERM 1130 1404923 - 1404962 + F 74 -9.8 -3.79251 | gap 1, overlap 1404924 CTGGTAGGCCTTTTC CGCCGCCACGCGCTGAAGG CTC CCGGTGGCGCG-GGCGGCA TTTGCTGGTAAGCTC TERM 1131 1404924 - 1404961 + F 70 -13.3 -2.87229 | gap 1, overlap 1404923 TGGTAGGCCTTTTCC GCCGCCACGCGCTGAAGG CTC CCGGTGGCGCG-GGCGGC ATTTGCTGGTAAGCT metC 1405056 - 1406273 + | cystathionine beta-lyase, PLP-dependent (beta-cystathionase) RALTA_A1362 1406526 - 1406287 - | hypothetical protein TERM 1132 1406586 - 1406603 + r 100 -9.1 -5.61596 | opp_overlap 1406586 1406587, overlap 1406587 CGCAGGCAACAAAAA TGGACGC CGCG GCGTCCG TTTTTTTGTGCCGGT TERM 1133 1406603 - 1406586 - R 88 -6.9 -5.10461 | opp_overlap 1406586 1406587, overlap 1406587 CGCAGGCAACAAAAA TGGACGC CGCG GCGTCCG TTTTTTTGTGCCGGT TERM 1134 1406602 - 1406587 - R 70 -10.4 -3.65554 | opp_overlap 1406587 1406586, overlap 1406586 GCAGGCAACAAAAAT GGACGC CGCG GCGTCC GTTTTTTTGTGCCGG TERM 1135 1406587 - 1406602 + r 76 -10.4 -3.95873 | opp_overlap 1406586 1406587, overlap 1406586 GCAGGCAACAAAAAT GGACGC CGCG GCGTCC GTTTTTTTGTGCCGG RALTA_A1363 1408276 - 1406627 - | conserved hypothetical protein,DUF337; Uncharacterized iron-regulated membrane protein RALTA_A1364 1408598 - 1408287 - | putative transmembrane lipoprotein RALTA_A1365 1408882 - 1408595 - | putative transmembrane lipoprotein serB 1409929 - 1409075 - | PHOSPHOSERINE PHOSPHATASE RALTA_A1367 1411421 - 1410030 - | putative Aminoacylase TERM 1136 1410237 - 1410219 - G 75 -5.8 -4.48987 | overlap 1410221 TTGGTAGAACGAAAA GTCCTCCG ACG CGGTGGCC TTGGGCGTGATCATC TERM 1137 1410404 - 1410417 + g 79 -4.5 -4.77157 | overlap 1410397 1410405 TGGTGCGCTTCATGC GGGCA TGGA TGTCC TTTTTCATGCCTTCG argE 1412879 - 1411656 - | ACETYLORNITHINE DEACETYLASE (ACETYLORNITHINASE) PROTEIN TERM 1138 1412266 - 1412248 - G 80 -16 -3.18264 | opp_overlap 1412233 1412254 GGCGTCAGCGACGAA TGCGCGGC CTG GCCGCGCA CGCAGCAGCGGTAGG mfd 1416407 - 1412958 - | transcription-repair ATP-dependent coupling factor, helicase TERM 1139 1414450 - 1414393 - G 74 -12 -3.54129 | gap 2, opp_overlap 1414413 GACAGCGTCTGGAAA TGCTGCTCGGCCAGCAGCGTGGTCGGCG CCAG CATCG-CCAC-CTGCTTGCCGCCCAGCA CCGCGACGAAGGCCG TERM 1140 1414479 - 1414461 - G 72 -13.8 -3.15861 | opp_overlap 1414457 CAGCACCGCGACGAA GGCCGCGC GCA GCGCGACC TCGGTCTTGCCGAAG TERM 1141 1415205 - 1415195 - G 78 -6.8 -4.56597 | overlap 1415197 CGCTTTCGGCAAAAA GCTG CAG CAGC GTCTCGCGCCGCCCG TERM 1142 1416467 - 1416430 - H 91 -9.7 -4.56597 | gap 1, overlap 1416431 1416433 GGGGGCGTTCAAAAA CGACGACACCCCGCCGGC ATT GCGGGCGGGG-GTCGGAA CAGGGGACTCCAGGT TERM 1143 1416464 - 1416433 - H 91 -18 -3.23708 | gap 1, overlap 1416431 1416430 GGCGTTCAAAAACGA CGACACCCCGCCGGC ATT GCGGGCGGGG-GTCG GAACAGGGGACTCCA ispD 1416605 - 1417378 + | 4-diphosphocytidyl-2C-methyl-D-erythritol synthase ispF 1417383 - 1417892 + | 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase RALTA_A1372 1418467 - 1417895 - | putative N-acetyltransferase (GCN5 family) TERM 1144 1418556 - 1418589 + r 93 -17.5 -3.40403 | opp_overlap 1418558, overlap 1418542 1418587 GTTGCAGGATGGGAA CAGCCGGCAATTTCC GATG GGAAGCTGCCGGCTG TTGTGCTACGGCGCC TERM 1145 1418587 - 1418558 - R 78 -14.3 -3.07043 | opp_overlap 1418542 1418556 TGCAGGATGGGAACA GCCGGCAATTTCC GATG GGAAGCTGCCGGC TGTTGTGCTACGGCG RALTA_A1373 1419207 - 1418686 - | putative Alkylhydroperoxidase ahpD, ANTIOXIDANT oxidoreductase TERM 1146 1419252 - 1419239 - R 100 -9.5 -5.02074 | opp_overlap 1419239 TCAGGGCTCAAAAAA CCCGC GCAT GCGGG TTTCGATGCGGAGGG ahpC 1419863 - 1419315 - | Peroxiredoxin, Antioxidant oxidoreductase citA 1421430 - 1420129 - | citrate transporter envZ 1423005 - 1421656 - | sensory histidine kinase in two-component regulatory system with OmpR, regulates ompF and ompC expression, senses osmolarity (OmpR family) TERM 1147 1422502 - 1422469 - G 70 -8.7 -3.85698 | overlap 1422492 GCGCGCCGTGATAAA CGCCGCGCCGATGAT CGAC AGCAGTAGCGCGGCG ATACTCCACCACAGC TERM 1148 1422983 - 1422973 - G 72 -8.2 -4.09321 | overlap 1422960 CAGCGAACCAAAGAA CCGC GTT GCGG TACGGCCGATTACGG ompR 1423752 - 1423030 - | response regulator in two-component regulatory system with EnvZ, regulates ompF and ompC expression (OmpR family) RALTA_A1378 1424055 - 1424402 + | putative transmembrane lipoprotein RALTA_A1379 1425664 - 1424399 - | putative N-carbamoyl-L-amino-acid hydrolase; Amidase, hydantoinase/carbamoylase family; putative exported protein TERM 1149 1425098 - 1425081 - G 72 -6.9 -4.38712 | overlap 1425083 1425085 TGCACTTCGACAAAA CCCAGCA GCGA CGCCGGG TCGAGCGCTGCGGCG crtB 1426554 - 1425718 - | phytoene synthetase, Trans-Isoprenyl Diphosphate Synthase TERM 1150 1426598 - 1426582 - H 86 -15.1 -3.66666 | overlap 1426575 TCGAAAATGGGGAAA CCGCGGG GAA CCCGCGG AATAGCGGGGCTGCC TERM 1151 1427306 - 1427290 - g 72 -13.7 -3.14132 | CGCCGTGGTCAGCAA GGGCCAG CCG CTGGCCC GGCTCGATCCCGCCG RALTA_A1381 1427018 - 1428160 + | putative TRANSPORT/EFFLUX TRANSMEMBRANE PROTEIN TERM 1152 1428248 - 1428263 + G 71 -2.4 -4.59773 | overlap 1428230 GGTGGTGCTGCTGCT CGGCGG CCTG CTGGCG TTTTTCCAGCTGGGC TERM 1153 1429220 - 1429232 + G 72 -5.5 -4.46112 | overlap 1429213 GGCGGTGGTGATCGT GCTGG CGG TCAGC TTTGTTTCGCTCGGC RALTA_A1382 1428165 - 1431278 + | putative TRANSMEMBRANE DRUG EFFLUX PROTEIN RALTA_A1383 1431959 - 1431318 - | hypothetical protein TERM 1154 1432187 - 1432168 - H 91 -3.5 -5.40004 | opp_overlap 1432171 TATGAAAGCAAAAAA GGCGG CTGGAAGTGC CCGCC TTTGCCCGCATGCTT RALTA_A1385 1432349 - 1432717 + | hypothetical protein RALTA_A1386 1433549 - 1432692 - | conserved hypothetical protein, DUF519 TERM 1155 1433121 - 1433148 + g 74 -13.4 -3.28712 | gap 1, opp_overlap 1433123 GTCGCCGTCGTACAG CATCACGCGGCGC CCG GCGCCGCG-GAAG TTGTCGCGCAAGACC TERM 1156 1433808 - 1433788 - g 86 -18.3 -3.1211 | opp_overlap 1433784 1433782 TACCACAGCACCGAA GGCGGCCTG GCG CAGGCCGCC CATGTCTTCCTCGGC TERM 1157 1434822 - 1434859 + G 84 -20.5 -2.90075 | GAGCGCCGCCGAGGC GGCTGCCGCGCACCACG CCGG CGTGCCGCGCGGCGGCC TGTGGTTCCCGCAGG RALTA_A1387 1433614 - 1435668 + | conserved hypothetical protein, DUF752; putative oxydoreductase tig 1435899 - 1437254 + | peptidyl-prolyl cis/trans isomerase (trigger factor), molecular chaperone involved in cell division clpP 1437355 - 1438005 + | proteolytic subunit of clpA-clpP ATP-dependent serine protease TERM 1158 1438086 - 1438102 + F 100 -9.4 -5.08824 | AAGGCTACACCGGAA CGAGGC CCCGT GCCTCG TTTTTTGCATCGGAA clpX 1438258 - 1439535 + | ATPase and specificity subunit of ClpX-ClpP ATP-dependent serine protease TERM 1159 1439592 - 1439615 + F 100 -11.7 -6.11392 | opp_overlap 1439591 1439592 GCAGCAGGCGGAAAG GCCGTTCGC GTAGAA GCGAGCGGC TTTTTTTGTTTATTT TERM 1160 1441598 - 1441573 - g 75 -6.7 -4.4078 | GGCCGGCAAGGAAAA CCAGGTTGGCC AGGT GACCGGCCTGG CGTGGACCGAGGTGG lon 1439789 - 1442200 + | DNA-binding ATP-dependent protease TERM 1161 1442254 - 1442225 - f 93 -17.1 -3.40073 | opp_overlap 1442226, overlap 1442226 AGCCGCATGAACGAA GCGCCGCAGGGCA GCAA TGCCCCGCGGCGT TTTTTTGTCCTGGCG TERM 1162 1442253 - 1442226 - f 91 -20.6 -2.63723 | opp_overlap 1442226, overlap 1442225 GCCGCATGAACGAAG CGCCGCAGGGCA GCAA TGCCCCGCGGCG TTTTTTTGTCCTGGC TERM 1163 1442226 - 1442253 + F 100 -18.4 -5.67063 | opp_overlap 1442226 1442225 GCCGCATGAACGAAG CGCCGCAGGGCA GCAA TGCCCCGCGGCG TTTTTTTGTCCTGGC TERM 1164 1442486 - 1442507 + F 100 -9.5 -5.65177 | opp_overlap 1442486 1442482 AGGCCGGTAAATCAA GGACTTAGA GCGA TCTAGGTCC TTTTTTTATACCTGT RALTA_A1393 1442872 - 1443126 + | hypothetical protein RALTA_A1394 1443183 - 1443770 + | hypothetical protein TERM 1165 1444292 - 1444327 + G 79 -7.4 -4.52345 | gap 1, opp_overlap 1444287, overlap 1444295 GCTTCAAGGACGACT CGCAGGTGGGCGTCGCG CTG CGTGCCGGCCACCC-CG TTTATTTCGTCATCT TERM 1166 1445568 - 1445542 - g 71 -10 -3.75024 | overlap 1445556 CGGCAGCAGGAAGAA GCGGGCGCGGAA ATC CTCAGCGCCAGC CTGGACGCCTACCGG RALTA_A1395 1443832 - 1446132 + | hypothetical protein RALTA_A1396 1446196 - 1447134 + | putative Phosphate acetyl/butyryltransferase TERM 1167 1447332 - 1447365 + G 82 -3.7 -5.00616 | opp_overlap 1447331 ATGCCGGCAGCGAAC TCGGGCACGAAGGGG CCAT CGCCTTCCTGGCAGA TTTTTTGCGCGCCCA RALTA_A1397 1447139 - 1448329 + | Acetate kinase fabI2 1448409 - 1449188 + | enoyl-[acyl-carrier-protein] reductase (NADH) RALTA_A1399 1450152 - 1449274 - | putative dehydrogenase; putative exported protein RALTA_A1400 1450832 - 1450209 - | putative transcriptional regulator, TetR family RALTA_A1401 1452317 - 1450923 - | putative AMINO-ACID TRANSPORTER TRANSMEMBRANE PROTEIN TERM 1168 1452177 - 1452135 - G 77 -15.5 -3.21099 | gap 1, overlap 1452109 CGCCGCGATCACGAA CGACACCGTCAGCGCCGGCC CCGC GGTCAGCGC-GCCGGTGCCG GTCAGCACGAAAATG RALTA_A1402 1453675 - 1452581 - | putative branched-chain-amino-acid aminotransferase TERM 1169 1453983 - 1453971 - H 70 -10.5 -3.66018 | opp_overlap 1453972 GGAGGAGTGTAAGAA GCGGC CGC GCCGC CGTAAATTCAATAAT RALTA_A1403 1454467 - 1455693 + | putative patatin-like phospholipase RALTA_A1404 1455908 - 1456387 + | conserved hypothetical protein; putative Alkylhydroperoxidase AhpD core RALTA_A1405 1456392 - 1456793 + | conserved hypothetical protein, COG1917; putative exported protein RALTA_A1406 1457791 - 1456892 - | putative lytic transglycosylase MltA-interacting protein MipA; putative exported protein TERM 1170 1458001 - 1458020 + H 71 -11.4 -3.48276 | TCGCATGGGCCCTGG GGCGTCCT GTCC GGGACGCC TTGTGTGAGCGGGCC RALTA_A1408 1458050 - 1458514 + | conserved hypothetical protein, YjgF_like1 domain RALTA_A1409 1459439 - 1458528 - | putative transcriptional regulator, LysR family TERM 1171 1458632 - 1458616 - G 72 -5 -4.49981 | overlap 1458618 TACAGCAGCACAAAA GGCCGC GAACT GCCGCC GTAATCCCGCATCAC RALTA_A1410 1459719 - 1460429 + | putative dehydrogenase/reductase RALTA_A1412 1460670 - 1461620 + | putative transcriptional regulator protein, AraC family TERM 1172 1462609 - 1462590 - g 71 -10 -3.68302 | gap 1, overlap 1462581 GGAAGAGGTCAAGAA CCTGC-GCG AGG CGCTGCAGG GCGAACTGCCGCACC ppk1 1461769 - 1463904 + | polyphosphate kinase, component of RNA degradosome RALTA_A1415 1465568 - 1464135 - | putative FAD OXIDOREDUCTASE RALTA_A1416 1467312 - 1465702 - | putative TRANSCRIPTIONal REGULATOR, DNA-binding HTH domain (GntR) and aminotransferase domain (MocR family) TERM 1173 1466490 - 1466467 - G 85 -10.9 -4.32857 | opp_overlap 1466485, overlap 1466468 CGTCGCAAAGATAAA GCGCGGCGG GTCCTG CAGCCGCGC CGCGTCGGGCGCGAT TERM 1174 1468082 - 1468030 - g 77 -11.8 -3.83318 | gap 1, opp_overlap 1468045, overlap 1468032 GCTGGAAGAAGAGAA CACCGGCAACGGCGCGCTG-GCCAC GGTG GCGGCGCTGCGCAGCGCGGTCGGTG CCGGCAAGCTGGCTT TERM 1175 1468086 - 1468032 - g 73 -12.1 -3.49835 | gap 2, opp_overlap 1468045 1468082, overlap 1468030 TGGAAGAAGAGAACA CCGGCAACG-GCGCGCTG-GCCACG GTGGCGG CGCTGCGCAGCGCGGTCGGTGCCGG CAAGCTGGCTTGCTT RALTA_A1417 1467470 - 1468825 + | putative deacylase, Acetylornithine deacetylase/succinyl-diaminopimelate desuccinylase family RALTA_A1418 1468898 - 1470502 + | putative ABC-type peptide transport system, periplasmic component TERM 1176 1470966 - 1470987 + G 70 -4.3 -4.46775 | overlap 1470968 CCGGCTGCCCGCGAC CTTCCTGCT GATG AGCGGGGCG TTTCTCTTTTCCATC RALTA_A1419 1470589 - 1471665 + | putative ABC-type peptide transport system, membrane component RALTA_A1420 1471662 - 1472501 + | putative ABC-type peptide transport system, periplasmic component TERM 1177 1473471 - 1473429 - g 77 -3.9 -4.72272 | gap 1 TCTCTTCACCAAAAA GCGCGTGGTGCATGCAGTCG ATGG CGTCAGCTT-CACCGTGCGC CGCGGCGAGACGCTG RALTA_A1421 1472530 - 1474170 + | putative ABC-type peptide transport system, ATP_binding component puuE 1474222 - 1475484 + | 4-aminobutyrate aminotransferase, PLP-dependent gabD1 1475520 - 1476977 + | succinate-semialdehyde dehydrogenase I, NADP-dependent TERM 1178 1477288 - 1477267 - g 70 -12.9 -3.28912 | GGAGATCGAGATCAA GCCGGCGGC CGGC GCCGCGGGC GGAGGAAGTTGCCAA RALTA_A1424 1476974 - 1477306 + | conserved hypothetical protein, RmlC-like cupin motif ilvG2 1477303 - 1479015 + | ACETOLACTATE SYNTHASE ISOZYME II (LARGE SUBUNIT) PROTEIN TERM 1179 1479222 - 1479186 - g 82 -17.2 -3.05384 | gap 1, opp_overlap 1479204 GCGCGCGGCATCGAA CTGGCGGCGC-CGCCCG ATTG CGGGCGCGCGCCGCTGG AGGCGGTGCACAGTC TERM 1180 1479819 - 1479857 + G 70 -12.5 -3.2614 | gap 1, opp_overlap 1479819 1479818 GGCTATGGCTACAAC CTCAACTTC-CCGCTGGC GCAC GGCAGCGGCGACGTTGAG TTCCTGTCGGCGCTG RALTA_A1426 1479048 - 1480121 + | Putative acetylpolyamine aminohydrolase, Histone deacetylase superfamily RALTA_A1427 1480118 - 1481407 + | putative N-carbamoyl-L-amino-acid hydrolase RALTA_A1428 1481404 - 1482306 + | conserved hypothetical protein, DUF6; putative membrane protein puuC 1482303 - 1483802 + | aldehyde dehydrogenase RALTA_A1430 1484740 - 1483871 - | putative Metallophosphoesterase TERM 1181 1484461 - 1484443 - G 82 -17.4 -3.03124 | opp_overlap 1484441 1484437 CGTGATCTGCGAATA CGCGGCGC AGT GCGCCGCG GCTGTCGTGATTGCC RALTA_A1431 1485813 - 1484737 - | putative ABC TRANSPORTER, ATP-BINDING component RALTA_A1432 1486726 - 1485806 - | putative ABC TRANSPORTER, membrane component TERM 1182 1486212 - 1486193 - G 72 -3.4 -4.60487 | CACCACGGTGAAAAA GCGCTGCA TGCG TGTCGCGC CGAGACTGGCGGCGG RALTA_A1433 1487568 - 1486735 - | putative ABC transporter, membrane component RALTA_A1434 1488647 - 1487625 - | putative ABC TRANSPORTER, periplasmic binding component TERM 1183 1487823 - 1487859 + g 71 -10.8 -3.63991 | gap 1, opp_overlap 1487823 1487824, overlap 1487823 ATCGGACAGCACGAA GTC-CAGCACCTTGCGG GCTT CCGCAGGGTGCGGCGCC TTGTTGACCATGCTC TERM 1184 1488432 - 1488453 + g 79 -10.9 -4.05004 | gap 1, overlap 1488431 CCTTTCCGCCACGAT CT-GGGCCAG CGA CTGGCCCGAG TTCTTGTTGTCGTGC RALTA_A1435 1489816 - 1488731 - | putative TRANSCRIPTIONal REGULATOR, LacI family TERM 1185 1489887 - 1489874 - H 72 -3.9 -4.63218 | TTGTGCGGAAGAAAA TGAAA ACGT TTTCA TTCAAGCCGCAAAAA TERM 1186 1489923 - 1489905 - H 100 -8.8 -5.43866 | opp_overlap 1489905, overlap 1489922 CAAGCCGCAAAAAAA CGGGTGTC AAG GACAACCG TTGGTGCGGTGCGCC TERM 1187 1490313 - 1490294 - H 74 -10.6 -3.75024 | opp_overlap 1490295, overlap 1490295 CGCCAGTACCAAGAA GCGCCCGC AATC GCGGGCGT TTTTCATTTGTGGCT TERM 1188 1490312 - 1490295 - H 74 -14.1 -2.84693 | opp_overlap 1490295, overlap 1490294 GCCAGTACCAAGAAG CGCCCGC AATC GCGGGCG TTTTTCATTTGTGGC TERM 1189 1490295 - 1490312 + H 100 -14.1 -5.04601 | opp_overlap 1490294 1490295 GCCAGTACCAAGAAG CGCCCGC AATC GCGGGCG TTTTTCATTTGTGGC ppiD 1490423 - 1492357 + | PEPTIDYL-PROLYL CIS-TRANS ISOMERASE TERM 1190 1492401 - 1492421 + TF 100 -16.9 -5.71983 | opp_overlap 1492401 CGCCGGAAACAAGAA CCCCTGCCA ATG TGGCAGGGG TTTTTTTGTGGTTAA TERM 1191 1492421 - 1492401 - Tf 100 -16.9 -4.08557 | opp_overlap 1492401 CGCCGGAAACAAGAA CCCCTGCCA ATG TGGCAGGGG TTTTTTTGTGGTTAA tesA 1493681 - 1493007 - | multifunctional: Arylesterase; lysophospholipase RALTA_A1440 1493680 - 1494378 + | putative ABC transporter, atp_binding component pgi 1496030 - 1494387 - | glucosephosphate isomerase TERM 1192 1495378 - 1495353 - G 77 -11.1 -3.85698 | gap 1, opp_overlap 1495355 GCCGCTGGCGACAAA CCAGGCGCGCGC GCT GCGCGCGT-TGG CCATGGTCTCGAGCG RALTA_A1442 1497848 - 1496259 - | conserved hypothetical protein; putative carbohydrate kinase dadA2 1499157 - 1497856 - | D-amino acid dehydrogenase subunit RALTA_A1444 1500504 - 1499194 - | putative TRAP transporter, inner membrane large component (DctM) RALTA_A1445 1501055 - 1500504 - | putative TRAP transporter, inner membrane component (dctQ) TERM 1193 1500753 - 1500717 - G 71 -11.5 -3.64703 | GCTCTGCCACGCAAA GGTGCCCAGCGCCCACG CCG CGTAGGCGGCAAACACC AGGCACACGGTCAGC RALTA_A1446 1502116 - 1501151 - | putative TRAP transporter, extracytoplasmic binding receptor component (dctP) RALTA_A1447 1503616 - 1502240 - | putative AMIDOTRANSFERASE/AMIDASE TERM 1194 1502623 - 1502594 - G 72 -14.9 -2.88544 | GCCCAGGTCGATATA GTCGGCGGCGCTG ATGC CAGCGCCGCGGTC GATGCGCGACGCCAC TERM 1195 1503534 - 1503496 - G 77 -14.5 -3.13403 | gap 2, overlap 1503494 TGCTGTGCAGGAATA CGGCCTCGG-CCGC-CGGC GTG GCCGCGCGGGCCGCGGCCT GCTCCACGATCTGGG RALTA_A1448 1504867 - 1503752 - | putative sensor histidine kinase (dctS) RALTA_A1449 1505268 - 1505053 - | hypothetical protein TERM 1196 1505318 - 1505295 - R 100 -12.4 -5.0133 | overlap 1505296 GATCCGGGCAAAAAA GCGCCCGCTA CGTG TAGCGGGCGG TCGAAGCCGAATGGG TERM 1197 1505317 - 1505296 - R 86 -15.9 -3.60316 | overlap 1505295 ATCCGGGCAAAAAAG CGCCCGCTA CGTG TAGCGGGCG GTCGAAGCCGAATGG RALTA_A1450 1505730 - 1505449 - | hypothetical protein RALTA_A1451 1505981 - 1505733 - | hypothetical protein RALTA_A1452 1506226 - 1506816 + | conserved hypothetical protein, COG5631 (predicted transcription regulator) purL 1507025 - 1511071 + | phosphoribosylformyl-glycineamide synthetase (FGAM synthetase) RALTA_A1454 1511521 - 1511222 - | hypothetical protein TERM 1198 1511530 - 1511563 + r 80 -14.6 -3.19463 | GCTGCATCCTGAATG GCTGCAGGGCCGG-CG GGGG CGACCGGCCC-GCGGC TTACTGGATCCTGGC RALTA_A1455 1512358 - 1511564 - | putative Peptidylprolyl isomerase; putative exported protein RALTA_A1456 1512689 - 1512363 - | conserved hypothetical protein; stress induced morphogen BolA-like protein ispZ 1513278 - 1512739 - | intracellular septation protein A TERM 1199 1512945 - 1512958 + g 73 -8.1 -4.21194 | CCCACACCGGATCCG GCAGG GACA CCTGC TTTTCCATCATGGCG msrB 1513779 - 1513324 - | methionine sulfoxide reductase RALTA_A1459 1515420 - 1513831 - | conserved hypothetical protein, UPF0061 TERM 1200 1514359 - 1514320 - G 78 -6.2 -4.57569 | opp_overlap 1514357, overlap 1514321 GTAGTGGCGGAAAAA CGCCGCGGCGTAGCGGTC GCGG AACGGGTCCAGCGCGGCG CGCGCGGCTTCGACC TERM 1201 1514357 - 1514390 + g 82 -13.7 -3.78953 | opp_overlap 1514320 1514321 AACGGGTCCAGCGCG GCGCGCGCGGCTTCG ACCG CGGCATCGCGCGCGC TTTCCTGGTCGGCCT TERM 1202 1515575 - 1515551 - H 72 -7.2 -4.18018 | overlap 1515552 1515554 GGTGGCTAGGGAAAA CGACATGTTG AGGTG CAACATGCCA CGCAGTATTGTACGT TERM 1203 1515775 - 1515807 + H 95 -11.3 -4.65895 | opp_overlap 1515773 1515782 CCGATGCCATACATG CGAACGACCGTCCAA AAA TAGTACGGTTGTTCG TTTTTCGGTGGAACA alkK 1515847 - 1517472 + | Medium-chain-fatty-acid-CoA ligase (Medium-chain acyl-CoA synthetase) RALTA_A1461 1517621 - 1518871 + | putative ABC-type branched-chain amino acid transporter, periplasmic component RALTA_A1462 1519080 - 1520027 + | putative ABC-type branched-chain amino acid transporter, membrane component RALTA_A1463 1520032 - 1521345 + | putative ABC-type branched-chain amino acid transporter, membrane component RALTA_A1464 1521342 - 1522118 + | putative ABC-type branched-chain amino acid transporter, atp_binding component RALTA_A1465 1522118 - 1522831 + | putative ABC-type branched-chain amino acid transporter, ATP_binding component lysP1 1524485 - 1522947 - | lysine-specific permease, APC family TERM 1204 1523433 - 1523406 - G 70 -3.4 -4.48823 | gap 1, overlap 1523408 AAGCAACGCATAAAA CGGCACGC-CA TTGCGCG TGAGCTTGCCG AACACGCGCGGCGCG TERM 1205 1523755 - 1523773 + g 71 -11.6 -3.64703 | overlap 1523753 GGGCGTTCGGCCTCG CCGGCGGC AAC GCCGACGG TTTCGGTGCCAAGGA TERM 1206 1524566 - 1524548 - H 77 -3.7 -4.86862 | overlap 1524550 GGCAAAAAACGAAAA GCCGCGA GTCTA CCGCGTC TGGCCCGGCGAATTT fadB 1524980 - 1527061 + | multifunctional: 3-hydroxybutyryl-CoA epimerase, delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase, enoyl-CoA hydratase (N-terminal); 3-hydroxyacyl-CoA dehydrogenase (C-terminal) pncA 1527103 - 1527747 + | nicotinamidase/pyrazinamidase RALTA_A1469 1527795 - 1528973 + | putative 3-ketoacyl-CoA thiolase / acetyl-CoA acetyltransferase TERM 1207 1529389 - 1529368 - g 78 -5.7 -4.64676 | overlap 1529369 GGATGGCGAAGAAAA GCTCTGCGC GGTG GCGCAGGGA ACGATCGCGCGGCTT RALTA_A1470 1528973 - 1529419 + | putative thioesterase TERM 1208 1529439 - 1529452 + F 100 -9.5 -5.41746 | GGGAGTCGGAAGCGG GGCGC GGCA GCGCC TTTTTTTGACCGCTT RALTA_A1471 1529546 - 1531408 + | putative ACYL-COA DEHYDROGENASE TERM 1209 1531777 - 1531750 - g 71 -11.2 -3.61715 | gap 1 CATCCTGGTCAACAA CGCCGGCGCCACC TGG GGCGCC-CCGGCG GAAGACCATCCGCTG RALTA_A1472 1531463 - 1532245 + | putative DEHYDROGENASE OXIDOREDUCTASE RALTA_A1473 1532350 - 1532787 + | putative thioesterase TERM 1210 1532805 - 1532825 + F 75 -11.8 -3.64236 | opp_overlap 1532765 1532804, overlap 1532797 GCCGGCGCAGCACAT GCGGGGCG GTTCA TGCCCCGC TTTAGCAGTTTCCAT RALTA_A1474 1532875 - 1533885 + | Putative NADP-dependent Zn-binding oxidoreductases, putative GroES-like domain RALTA_A1475 1533960 - 1534808 + | putative L-fuculose-phosphate aldolase RALTA_A1476 1534870 - 1535772 + | putative OXIDOREDUCTASE DEHYDROGENASE TERM 1211 1536549 - 1536566 + G 71 -10.5 -3.78953 | GCCGCCCGACATTTC GCGGCTG GACC CGGCCGC TTTCGTGGTCAGGGT RALTA_A1477 1535812 - 1536759 + | putative HYDROLASE TERM 1212 1536793 - 1536828 + T 74 -4.7 -4.56597 | overlap 1536793 1536796 GAATGCCGTTCAGTT G-CCCTGTCGTTCCCGC GCAG GCGGGAACC-CAGTGAC TTTTTCCCCGAGGGG RALTA_A1478 1537452 - 1536931 - | conserved hypothetical protein, high-affinity ADP-ribose binding domain gbd1 1538689 - 1537541 - | NAD-DEPENDENT 4-HYDROXYBUTYRATE DEHYDROGENASE OXIDOREDUCTASE PROTEIN TERM 1213 1538881 - 1538866 - H 74 -4.6 -4.58663 | overlap 1538868 ATCATCGCGCAAAAA CTTGCC GCGT GGCACG ATGGGTAGCACTTTT TERM 1214 1538977 - 1539025 + H 73 -10.8 -3.53811 | overlap 1538978 CACTATTCGAACTTC TCCCGATGCCGACCCCGCGC CAGCGCAGC GCGCGCGGCCTGCACCGGGG TTTGCGCCGCATCAC RALTA_A1480 1539046 - 1540059 + | putative Esterase/lipase RALTA_A1481 1540132 - 1541115 + | conserved hypothetical protein, UPF0065 TERM 1215 1541136 - 1541188 + F 100 -29.3 -3.75153 | gap 2, opp_overlap 1541120, overlap 1541137 CGCCGCTTGCGTCCA GC--CAGGCCGCCGCGCCTGCCGGC CCGGC GCCGGCAGGCGCAGCGGCCTGATGC TTTGCATTGCCCCGA TERM 1216 1541137 - 1541185 + F 100 -33.2 -2.9732 | opp_overlap 1541120, overlap 1541136 GCCGCTTGCGTCCAG CCAGGCCGCCGCGCCTGCCGGC CCGGC GCCGGCAGGCGCAGCGGCCTGA TGCTTTGCATTGCCC RALTA_A1482 1541228 - 1541665 + | putative 4-hydroxybenzoyl-CoA thioesterase RALTA_A1483 1542844 - 1541870 - | putative NAD-dependent epimerase/dehydratase RALTA_A1484 1543654 - 1542872 - | putative hydroxypyruvate isomerase TERM 1217 1543713 - 1543679 - R 100 -24.3 -3.21925 | AGAGCGTAGGACGAA GCCGGGCCGGTCGCG GTCAG CGCGACCGCCCCGGC CGGATATCAGCGGTT RALTA_A1485 1545084 - 1543720 - | putative transporter, MFS family TERM 1218 1544296 - 1544349 + g 72 -13.8 -3.2218 | gap 1, opp_overlap 1544274 1544292 1544306, overlap 1544298 1544319 GTCGCTGAACACGGC GCCCAGC-GAATGCCCGTGCGACTG GCCGG CGGCCGCACCGGCCTTCTGCTGGTC TTCGTCGATGTTGCG TERM 1219 1544298 - 1544347 + g 77 -15 -3.17206 | gap 1, opp_overlap 1544274 1544292 1544306, overlap 1544296 1544319 CGCTGAACACGGCGC CCAGC-GAATGCCCGTGCGACTG GCCGG CGGCCGCACCGGCCTTCTGCTGG TCTTCGTCGATGTTG TERM 1220 1544889 - 1544875 - G 79 -11.4 -4.07885 | CACGGTCTCGGAAAA GGCCAG GTC CTGGCC CATCTGCAGCTTGGC TERM 1221 1545241 - 1545223 - R 72 -4.4 -4.59773 | overlap 1545225 GGTCAGTCGGAAAAA CGGGTGGC TGT GCTACCAG CGCGCCTGGAAGGCG RALTA_A1486 1545891 - 1545235 - | putative fuculose phosphate aldolase with Class II aldolase domain TERM 1222 1545275 - 1545319 + g 72 -13.4 -3.23395 | gap 1, opp_overlap 1545269, overlap 1545279 CGCAACTCAGCCAGT GCGC-CGTCGGGCAGCGCCGC GCGG GCGGCGAAGCCCGGCGTGTCC TTCATCATCATCCAT TERM 1223 1545279 - 1545314 + g 84 -19.6 -2.94695 | opp_overlap 1545269, overlap 1545275 ACTCAGCCAGTGCGC CGTCGGGCAGCGCCGC GCGG GCGGCGAAGCCCGGCG TGTCCTTCATCATCA RALTA_A1487 1547159 - 1545888 - | conserved hypothetical protein, COG3395; type III effector Hrp-dependent outer proteins (Hop) domain TERM 1224 1546105 - 1546092 - G 75 -9.5 -3.96148 | GCCGGCGACGACAAA GCGGC GCGT GCCGC GTGCCAGCAGGCCGG TERM 1225 1546604 - 1546659 + g 80 -16.9 -3.16191 | gap 3, opp_overlap 1546553 GCAGCGACGCGATGC GGTCGGCC-GTGGC-CTGCG-CGCCGCG CGC CACGGCGTCGTAGCGCAGCAGGCCGACC TTGCTCCGGCTCTGG RALTA_A1488 1548065 - 1547172 - | putative 3-hydroxyisobutyrate dehydrogenase; putative exported protein RALTA_A1489 1548849 - 1548115 - | putative transcriptional regulator, GntR family RALTA_A1490 1549070 - 1549498 + | conserved hypothetical protein; putative acyl CoA/Acetyltransferase RALTA_A1491 1550336 - 1549509 - | conserved hypothetical protein, DUF833 RALTA_A1492 1550719 - 1550429 - | hypothetical protein RALTA_A1493 1551762 - 1550737 - | putative aminomethyl transferase TERM 1226 1551229 - 1551184 - G 87 -17.5 -3.31461 | gap 1 GAGCCAGTCCCACAA CGCCGGCGCGGCGCCTGTCAGC GTG GCGGACAG-CGCCGCGCGCACG GCGTCGGCGCGTTCG RALTA_A1494 1551979 - 1552974 + | putative Aminodeoxychorismate lyase; putative exported protein tmk 1552982 - 1553593 + | thymidylate kinase holB 1553671 - 1554678 + | DNA POLYMERASE III, DELTA' SUBUNIT pilZ 1554742 - 1555185 + | TYPE 4 pilus assembly protein RALTA_A1498 1555223 - 1555729 + | putative acetyltransferase; putative Phosphinothricin acetyltransferase RALTA_A1499 1555762 - 1556556 + | putative metallo-dependent hydrolase; putative TatD-related deoxyribonuclease RALTA_A1500 1556558 - 1557295 + | conserved hypothetical protein, ankyrin repeat domain; putative exported protein RALTA_A1501 1557305 - 1557706 + | conserved hypothetical protein, DUF1232 RALTA_A1502 1558992 - 1557703 - | conserved hypothetical protein, DUF323 RALTA_A1503 1559794 - 1559174 - | putative acyl carrier protein phosphodiesterase (ACP phosphodiesterase) TERM 1227 1559975 - 1560009 + G 78 -5.7 -4.56597 | gap 1 CAAGACCTCAACGAC CTGTCGCTGTTCGCCC AAGT GGTCGAGCA-TGGCAG TTTTTCCGCGGCCAG TERM 1228 1560795 - 1560810 + G 74 -11.8 -3.76759 | CGCGCAAGGGCGTGA CGCCGG CCAC CCGGCG TTTCCTCGACTTCCT RALTA_A1504 1559957 - 1560904 + | putative transcriptional regulator, LysR family RALTA_A1505 1561094 - 1561513 + | hypothetical protein RALTA_A1507 1561567 - 1562151 + | putative lipoprotein RALTA_A1508 1563393 - 1562170 - | putative response regulator receiver (CheY-like) diguanylate phosphodiesterase (EAL domain) ftsK 1563643 - 1566969 + | - DNA translocase RALTA_A1510 1567002 - 1567334 + | conserved hypothetical protein, RmlC-like cupin domain RALTA_A1511 1567933 - 1567337 - | conserved hypothetical protein, COG2128 RALTA_A1512 1568475 - 1567930 - | conserved hypothetical protein, COG4950 TERM 1229 1568093 - 1568113 + g 75 -9 -4.19704 | gap 1 AGTGCCAGCAGCGCG GCGCGGTCG CCCT CGACCG-GC TTTTCGATCAGCTTG RALTA_A1513 1569985 - 1568510 - | putative flavoprotein involved in K+ transport, COG2072 RALTA_A1514 1571015 - 1569978 - | putative TRANSCRIPTIONal REGULATOR, LysR family RALTA_A1515 1571259 - 1572740 + | putative ABC-type glycine betaine transport system, Substrate-binding inner membrane component RALTA_A1516 1574155 - 1572737 - | putative Transcriptional regulator, GntR family with aminotransferase activity RALTA_A1517 1574312 - 1574497 + | putative three-component membrane-bound alcohol deshydrogenase, subunit III (AdhS) TERM 1230 1574790 - 1574764 - g 70 -14.5 -2.77701 | gap 1, overlap 1574761 1574759 ATTCGACCAATATCA CGCCCGATGCCG CCAG CGGCATCGG-CG CCTACACGCTGGCCG TERM 1231 1575093 - 1575053 - g 70 -14.5 -2.70932 | TCCGGTGCGCAACGA CCCGGCGCGCGACGCGGCC TGG AACCGCGGCGCGTACCTGG TGCAGGCGGTGGCGC RALTA_A1518 1574511 - 1575836 + | putative three-component membrane-bound alcohol deshydrogenase, cytochrome c subunit (AdhB) TERM 1232 1576359 - 1576383 + G 81 -7.8 -4.65895 | gap 1, overlap 1576341 1576359 CGCGGACCCGTATGC CGC-GCTCGGC ATGG GCCGGGCCGTG TTTTTCGATGCCGAG TERM 1233 1576359 - 1576381 + G 70 -9.1 -3.94812 | gap 1, overlap 1576341 1576359 CGCGGACCCGTATGC CGCGCTCGGC ATGG GCCGGGC-CG TGTTTTTCGATGCCG TERM 1234 1577649 - 1577625 - g 73 -12.8 -3.42503 | overlap 1577606 CGCCAACAGCGACAA CGCCGGCAGC CCTTC GCTGACGGCG GCGGTGGCCCAGGGC RALTA_A1519 1575844 - 1577694 + | putative three-component membrane-bound alcohol deshydrogenase (AdhA) RALTA_A1520 1578697 - 1577702 - | putative Phospholipid/glycerol acyltransferase; putative membrane protein RALTA_A1521 1579794 - 1578838 - | conserved hypothetical protein, COG4313; putative exported protein TERM 1235 1579834 - 1579849 + H 86 -8.2 -4.62471 | opp_overlap 1579817, overlap 1579835 GGGCAGGGCACGCGG TCGGCG CCCT CGCCGG TTTTTCGACATTGCA RALTA_A1522 1580054 - 1580839 + | conserved hypothetical protein; putative exported protein TERM 1236 1581237 - 1581221 - g 73 -7.9 -4.2349 | opp_overlap 1581233 CGCCTATACCGAAAA CGGCACC TGG GGTGCGG GCGTGGCGCATTTCC RALTA_A1523 1580868 - 1582037 + | putative Outer membrane protein/protective antigen OMA87 TERM 1237 1582400 - 1582368 - g 74 -12 -3.65046 | gap 2, opp_overlap 1582369 1582370 CGGCGATGGCAAGAA CGGCCCGGC-CG-GCA TGG TGCGCGTGCCGGGCGG CGAATTCCTGATGGG RALTA_A1524 1582171 - 1583403 + | putative Sulfatase-modifying factor (C-alpha-formyglycine-generating enzyme) RALTA_A1525 1583461 - 1584543 + | putative nonspecific acid phosphatase TERM 1238 1584757 - 1584702 - g 75 -9.4 -4.11664 | overlap 1584704 1584705 GCGACAAGAAGGAAA CACCGCCGAAGGCGCAGCAGCCGGCT GCCC AGGCGCCCGCCGCCACCCCGGCGCCG GGCGCCGCCGCCCCG RALTA_A1526 1584596 - 1586353 + | Sulfatase TERM 1239 1586512 - 1586570 + G 100 -17.7 -4.65895 | gap 3, opp_overlap 1586531, overlap 1586516 CGCCCGGGCCGCCGC GCAGGCAGGGCAGG-ACAAGC-TGGCGT GGCAGG ACGCCGTGCTGGTGCCTGCCCTGC-TGC TTTTTGCCTCGGGCA TERM 1240 1586516 - 1586567 + G 87 -18.2 -3.26405 | gap 2, opp_overlap 1586531, overlap 1586512 CGGGCCGCCGCGCAG GCAGGGCAGG-ACAAGC-TGGCGT GGCAGG ACGCCGTGCTGGTGCCTGCCCTGC TGCTTTTTGCCTCGG TERM 1241 1586586 - 1586597 + G 71 -2.2 -4.63928 | gap 1, overlap 1586576 1586574 TTTTTGCCTCGGGCA CC-GC GGG GCTGG TTTTTCAGGTGCTGT TERM 1242 1587007 - 1587031 + G 75 -9.9 -3.99324 | opp_overlap 1586997, overlap 1586987 CAACACCGCCGGCGC GATCGCCGGCA CGC TGCTGGCGGGC TTTGTGCTGGTGCCC RALTA_A1527 1586384 - 1589071 + | putative Spermine synthase TERM 1243 1589297 - 1589311 + G 72 -5.6 -4.41348 | TGCTGCCGGCGGATA TCACCG GGT CGGAGA TTTATTTCACCGAAG RALTA_A1528 1589068 - 1590042 + | putative ATPase, AAA_3 family; MoxR-like ATPase TERM 1244 1590645 - 1590612 - g 78 -17.3 -2.70932 | CGCGCGCTTCAACCA GGCCCTGCGCGCCGA TGCG CCGGCGCGCCGCGCC GCGGGGCAGCTGAAC RALTA_A1529 1590061 - 1591080 + | conserved hypothetical protein; putative exported protein TERM 1245 1591104 - 1591064 - f 79 -16.7 -2.52464 | CGGTGCGGCAACGCA CGGGGGCGGCGCGATGAGC CTC ACGCACAGCGCCGCCCCGG CAACCCTGGCAACGC RALTA_A1530 1591077 - 1591592 + | conserved hypothetical protein; putative exported protein RALTA_A1531 1591579 - 1592658 + | conserved hypothetical protein, vWA domain (Von Willebrand factor, type A); putative membrane protein TERM 1246 1593077 - 1593041 - g 82 -16.6 -3.37959 | gap 2, opp_overlap 1593040 CAAGCTCAAGATCAA GGCGCTGCTGGCGCGCCG CGA CGGCG-GCC-GCACCGCC CTCTATGCCTATGCC TERM 1247 1594080 - 1594067 - g 73 -8.1 -4.18018 | overlap 1594068 GGCGCTGATGGAAAA GCTGC TGGC GCAGC AATTGCCGAAGGACA RALTA_A1532 1592658 - 1594319 + | conserved hypothetical protein, Tetratricopeptide TPR_4 motif; putative membrane protein TERM 1248 1594819 - 1594785 - g 83 -12.8 -4.08216 | gap 1, opp_overlap 1594790 GCACGGGCGGCAAAA GCACCGCGGCGGCGG GCGCTG CCGCCGGC-CGGCGC TTGCTGCCGGTGGCG TERM 1249 1594790 - 1594819 + G 80 -16.3 -3.15544 | opp_overlap 1594785 GGCGGCAAAAGCACC GCGGCGGCGGGCG CTGC CGCCGGCCGGCGC TTGCTGCCGGTGGCG RALTA_A1533 1594331 - 1595710 + | conserved hypothetical protein; putative exported protein TERM 1250 1595969 - 1595981 + G 84 -4.7 -5.0133 | CGCCATGGGCTATTC CGGCG GGC CGCAG TTTTTTGCCAACCTG RALTA_A1534 1595745 - 1597442 + | putative transporter RALTA_A1535 1597574 - 1598452 + | putative Glutamine amidotransferases class-II (Gn-AT), YafJ-type RALTA_A1536 1600882 - 1598483 - | putative Spermidine synthase TERM 1251 1599247 - 1599218 - G 73 -9.9 -3.87569 | GAAAAAATGGAAGAA GTACGGCCGGTCA TCGG TGGCGGGCCGCAC GTCGAACTTGTAGCG RALTA_A1537 1601665 - 1600913 - | putative Protein-L-isoaspartate(D-aspartate) O-methyltransferase; putative exported protein RALTA_A1538 1604545 - 1601765 - | putative chaperone heat-shock protein TERM 1252 1601981 - 1601993 + g 75 -4.7 -4.62069 | CACCGCGGCGAACGC GGCCG GCT CGACC TTTTTCCAGTCGAGC TERM 1253 1602236 - 1602253 + g 75 -8.3 -4.1822 | GTCGGCATAGCCGCC CCGGGCG GGCC CGGCCGG TTTCTTGAAATGCGC TERM 1254 1603179 - 1603128 - G 78 -12.2 -3.80573 | gap 3, overlap 1603130 TCGAGCACCAGGAAA TAGCTGCGCGCCGAGCC-GCCGCCG ATGCG CGGCGCCTGGC-CGGCGCGC-GCGC GCGCATACGCGACCG TERM 1255 1603177 - 1603130 - G 93 -19.2 -3.48738 | gap 3, overlap 1603128 GAGCACCAGGAAATA GCTGCGCGCCGAGCC-GCCGCCG ATGCG CGGCGCCTGGC-CGGCGCGC-GC GCGCGCATACGCGAC RALTA_A1539 1606421 - 1604574 - | putative heat-shock chaperone Hsp70/DnaK RALTA_A1540 1606990 - 1606418 - | hypothetical protein TERM 1256 1606858 - 1606892 + g 86 -19.3 -3.14132 | gap 1, opp_overlap 1606828 GAGCGCTCACCGGTG CCGCCTGCGCGGCCGG CTCG CCGG-CGCGCAGGCGC TTGATGCCGGCGGCC rpoD2 1608995 - 1607028 - | RNA polymerase sigma 70 (sigma D) factor TERM 1257 1607921 - 1607937 + g 74 -13.7 -3.32647 | opp_overlap 1607918, overlap 1607931 CTTCGGCAACCAGGC CCTGGCC CCA GGCCAGG TTGGTCTCGTTGCCC TERM 1258 1608128 - 1608164 + g 70 -13 -3.27525 | gap 2, opp_overlap 1608145, overlap 1608136 CGCGCACCGCGTCCC GCGCGGCGGCGAAGGCAG GCG TTGCCG-CGCCGCCG-GC TTCGCTTTCGGCGCG TERM 1259 1608337 - 1608376 + g 73 -16.4 -2.66964 | gap 1, overlap 1608333 CTGTCGAGGCTGCTG TCGTCGGCGTCGTCCGCCG CGG CGGCGGCCGGC-TCGGCGA TGCTCTCGTCGCTCA TERM 1260 1609261 - 1609243 - R 73 -8.1 -4.08945 | gap 1, opp_overlap 1609256, overlap 1609229 AGGATGCGCTGAAAA GC-GCGGC CGAA GCCGCTGC CATGGCGCGATTTGC RALTA_A1543 1609783 - 1609325 - | putative transcriptional regulator, AsnC/Lrp family RALTA_A1544 1610403 - 1609840 - | putative Cysteine dioxygenase type I TERM 1261 1610504 - 1610529 + r 100 -4.7 -5.71712 | GGAATTGTAATCGTA TTCCGGGAAGG CGCG CCTTATTGGAA TTTTTTTCTATCGGG RALTA_A1545 1611370 - 1610606 - | conserved hypothetical protein; putative exported protein TERM 1262 1610934 - 1610962 + g 70 -12.4 -3.35996 | gap 1, overlap 1610934 1610939 1610948 GCCGCGGCGCCGGCA CCG-CCCGCCTGC GCGC GCAGGCGGGCCAG TTCTGCCTGGCGCTC RALTA_A1546 1611877 - 1611509 - | putative dioxygenase, Glyoxalase/bleomycin resistance protein RALTA_A1547 1612647 - 1611952 - | putative transcriptional regulator, TetR family TERM 1263 1612485 - 1612532 + g 88 -11.2 -4.46212 | gap 1, opp_overlap 1612485 GGAAGTACGTGAACA CCGTCGCCTCGGACA-CGCCCAG GCG CTGGGCGATCTCGGTGGTGGTGG TTTTCTCGTAGCCCA RALTA_A1548 1612994 - 1614718 + | putative Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase RALTA_A1549 1614776 - 1616383 + | Methylcrotonoyl-CoA carboxylase beta chain TERM 1264 1616693 - 1616717 + G 70 -9.1 -3.85698 | opp_overlap 1616682, overlap 1616682 CGAAGCCTTCGCCGA GGCCTGCGCCG CGG CGGGGCTGGTC TTTATCGGCCCGCCG TERM 1265 1617191 - 1617165 - g 93 -20.8 -3.19463 | GGCATGACCGAGGAA CGCCGCCGCGCC ATG GGCGAGGCGGCG GTGGCCGCTGCCAAG TERM 1266 1617586 - 1617539 - g 74 -12.7 -3.64703 | gap 3, opp_overlap 1617584 CGGGGCTGACGGAAA CCCGCACGGCCCGGCCGGCGTGCG CAT CG-ACGCCGGC-GTGC-GCGAGGG CGACACCATCAGCCC RALTA_A1550 1616415 - 1618442 + | Methylcrotonoyl-CoA carboxylase subunit alpha TERM 1267 1618620 - 1618632 + G 71 -10.5 -3.73775 | opp_overlap 1618616 1618620 TCGCCAAGGGAGAAA GCCGG GCG CCGGC TTTCCTGGCGATCAA TERM 1268 1618632 - 1618620 - g 75 -10.5 -3.97368 | opp_overlap 1618620, overlap 1618616 TCGCCAAGGGAGAAA GCCGG GCG CCGGC TTTCCTGGCGATCAA TERM 1269 1618939 - 1618925 - g 81 -7 -4.66609 | overlap 1618927 GACGCCATCGAAAAA GCCCTG TCC CCGGGC CCCTTCGTGCTCGGC RALTA_A1551 1618505 - 1619110 + | putative GLUTATHIONE S-TRANSFERASE PROTEIN, GST superfamily, Beta family. TERM 1270 1619128 - 1619112 - f 75 -13.7 -3.06312 | opp_overlap 1619115, overlap 1619100 AAACCGCCCAGTGAA GCGGCAG CGC CTGCCGC GGCGGCATGCCGGCT TERM 1271 1619264 - 1619289 + F 100 -21.9 -2.55074 | CTGGCCCACCGGCCA CACGGCGCCGG AGAT CCGGCGCCGTG TCCCTTCAACTTCAA RALTA_A1552 1619316 - 1619807 + | putative 3-demethylubiquinone-9 3-methyltransferase TERM 1272 1619812 - 1619844 + F 93 -19.1 -3.14931 | opp_overlap 1619798 1619797 CGCCGGTTTGATGCA GCGCCCCGGCTTGCG CGG CGCAAGCCGGCCCGC TTCCTCCAGCATCCA TERM 1273 1619967 - 1620021 + G 100 -20.7 -3.86015 | gap 1 AGTCGAATTCTGGCT GGCGACCGATGACGGGCCGCGCCGGC TGCG GCTGGCGCCGCA-GCCATCGGTTGCC TTTGTGCCGCAGGTG TERM 1274 1621255 - 1621265 + G 83 -8.2 -4.56597 | overlap 1621243 GCGGTGCCGGGCTTC CGCG GGG CGCG TTTTTCGCGGACGAA TERM 1275 1622055 - 1622037 - g 76 -13.8 -3.44051 | CGCCGACGACTATAA CGAGCGCC AGG GGCGCCCG CGCCAGTACCAGCAG polB 1619890 - 1622256 + | DNA polymerase II and 3'-> 5' exonuclease, DNA polymerase type-B family TERM 1276 1624443 - 1624471 + F 77 -13.3 -3.66178 | opp_overlap 1624443, overlap 1624449 GGCCAGGTGGCCAAA TGCAAGCGCTTAA GGA TTGAGCGTTTGCA TTTGGCATTGCCAAG TERM 1277 1625190 - 1625179 - f 72 -7.2 -4.2354 | GAAAGGCGAAAAGAA CCCC GGGA GGGG AGTGAAATAGATCCT TERM 1278 1627815 - 1627854 + F 89 -16.7 -3.53012 | opp_overlap 1627821, overlap 1627816 1627821 CCAGGCTCTTATTGT G-CAAAACCCCTCGACAGC GTGT GCTG-CGAGGGGTTTTGTC TTTGGCGCGGCGCAA TERM 1279 1627816 - 1627852 + F 95 -20.4 -3.34398 | gap 1, opp_overlap 1627821, overlap 1627815 1627821 CAGGCTCTTATTGTG CAAAACCCCTCGACAGC GTGT GCTG-CGAGGGGTTTTG TCTTTGGCGCGGCGC TERM 1280 1627847 - 1627821 - f 93 -14.5 -4.09685 | gap 1, opp_overlap 1627821 1627816 1627815 TCTTATTGTGCAAAA CCCCTCGACAGC GTGT GCTG-CGAGGGG TTTTGTCTTTGGCGC TERM 1281 1627821 - 1627847 + F 100 -14.5 -4.78848 | gap 1, opp_overlap 1627821, overlap 1627816 1627815 TCTTATTGTGCAAAA CCCCTCGACAGC GTGT GCTG-CGAGGGG TTTTGTCTTTGGCGC TERM 1282 1628130 - 1628113 - g 75 -5.5 -4.53303 | CATTGGGAGAGAAAA TGAGCCG CTTG CTGCTCA CCAATATCGACCCCG RALTA_A1555 1628112 - 1628366 + | hypothetical protein RALTA_A1556 1629055 - 1628372 - | conserved hypothetical protein, DUF159 RALTA_A1557 1629693 - 1629151 - | hypothetical protein RALTA_A1558 1631488 - 1629764 - | putative Galactose oxidase precursor TERM 1283 1630220 - 1630241 + g 88 -15.1 -3.79906 | opp_overlap 1630214 1630217 1630213 CATCGAAATCCAGCT GCCGGTCGG ATCG CCGGCCGGC TTGTTGTAGAGCTCG TERM 1284 1630613 - 1630599 - G 77 -11.4 -3.9009 | opp_overlap 1630598 AAGGTATTGTAGAAA GCAGGC CCG GCCTGC ATCATCTGGCCCGAT TERM 1285 1631642 - 1631678 + r 95 -10.1 -4.4715 | overlap 1631643 GTCCGCGCGGGGTAG CTCAGGTGCGAATGCCG CAA TGACATTCGCACCGGAC TTTTCTAGCTTAGGG TERM 1286 1631643 - 1631677 + r 77 -13.6 -3.27808 | overlap 1631642 TCCGCGCGGGGTAGC TCAGGTGCGAATGCCG CAA TGACATTCGCACCGGA CTTTTCTAGCTTAGG RALTA_A1559 1632030 - 1631857 - | hypothetical protein TERM 1287 1632067 - 1632100 + H 77 -14.7 -2.85585 | overlap 1632064 1632063 1632061 TTGTCGCCCCGTAGC TGCGCCGCATCAATT CTTG AATTCGTGCGGCGCA TCGTATATTTTCGAG TERM 1288 1632235 - 1632192 - H 81 -12.5 -3.81414 | opp_overlap 1632231 1632232 AGCCGCAATCAATAA CGCAT-GCCCGGAACAAGGGC CATC GCCCCCGT-CCGCGCAATGCG CGCGTGACCCTGCGC RALTA_A1560 1632300 - 1633892 + | putative transporter, Permease Membrane Region PF06826.2 (YidE/YbjL duplication). ldhA 1633945 - 1634940 + | fermentative D-lactate dehydrogenase, NAD-dependent RALTA_A1562 1636139 - 1635120 - | conserved hypothetical protein, UPF0065 uxuA 1637227 - 1636187 - | D-mannonate dehydratase TERM 1289 1637886 - 1637850 - g 78 -14.3 -3.6715 | TGATTGAATCGGAAA TCGCCGGCCTGGCGGCC AGC GAGCGCAAGGACGGCGA CCTTGACCGTATGTT RALTA_A1565 1637591 - 1638229 + | putative transcriptional regulator, gntR family (putative transcriptional repressor for uxu operon uxuR) RALTA_A1566 1638777 - 1639034 + | conserved hypothetical protein (putative Acyl-CoA N-acyltransferase) TERM 1290 1639399 - 1639423 + G 71 -10.6 -3.71378 | GGCGACGCGTACGCC GGCGGCTGCG GACGA CGCGGCGGCC TTTGCCTATCCGGTC RALTA_A1567 1639232 - 1640299 + | putative glycosyl transferase, group 1 RALTA_A1568 1640542 - 1640339 - | hypothetical protein RALTA_A1569 1641755 - 1640934 - | putative methyltransferase, ubiE/COQ5 family TERM 1291 1642845 - 1642835 - g 81 -2.4 -5.01535 | CGACAACGACAAAAA GGTC AAG GCCC CATTCGACGCGCAGC RALTA_A1570 1642020 - 1642889 + | conserved hypothetical protein, DUF72 mnhG 1643348 - 1643004 - | Multisubunit Na+/H+ antiporter, MnhG subunit mnhF 1643632 - 1643360 - | Multisubunit Na+/H+ antiporter, MnhF subunit mnhE 1644120 - 1643617 - | Multisubunit Na+/H+ antiporter, MnhE subunit TERM 1292 1643856 - 1643840 - G 75 -5.8 -4.4891 | gap 1, overlap 1643842 GGGACCACGATAAAA GC-CGGC CGCA GCCGCGC GGTACGTCCCAGCAC mnhD 1645664 - 1644123 - | Multisubunit Na+/H+ antiporter, MnhD subunit TERM 1293 1645393 - 1645345 - G 71 -10.8 -3.54307 | gap 1, opp_overlap 1645348, overlap 1645346 AACAGCGCGTGGAAA TGCCGGCCCTGGC-GCGCCGTGC TCTC GCCCGCCGCGGCCAGCGCGGCCA CCGCCAGCAGCGCGG mnhC 1646062 - 1645661 - | Multisubunit Na+/H+ antiporter, MnhC subunit mnhAB 1648863 - 1646059 - | Multisubunit Na+/H+ antiporter, MnhA and MhnB subunits TERM 1294 1649180 - 1649201 + r 76 -13.7 -3.14132 | overlap 1649199 GCGTGCCGCGTGCAA GCCGGTCGT CGAC GCGACCGGC TTGCTGGCCGGAGAC exaA1 1651404 - 1649236 - | Quinohaemoprotein ethanol dehydrogenase RALTA_A1578 1651683 - 1652480 + | putative Enoyl-CoA hydratase/isomerase RALTA_A1579 1653323 - 1652508 - | putative transciptional Regulator, IclR family fadA 1653539 - 1654717 + | 3-ketoacyl-CoA thiolase; (thiolase I, acetyl-CoA transferase) TERM 1295 1654762 - 1654722 - f 74 -12.6 -3.33815 | gap 1, opp_overlap 1654721, overlap 1654754 1654756 AGCGCCTGTAAGCAA CCCTTCC-GTCGTTCCCGC GAAG GCGGGAATGACAGGCAGAG GATTCCTGCCCCATT RALTA_A1581 1654807 - 1655571 + | 3-hydroxyacyl-CoA dehydrogenase type-2 (3-hydroxyacyl-CoA dehydrogenase type II) (Type II HADH) caiD 1655600 - 1656364 + | crotonobetainyl-CoA hydratase TERM 1296 1656411 - 1656385 - f 90 -20.2 -2.63596 | opp_overlap 1656385 1656388, overlap 1656388 CCGCACCTGACATGA GAACGGCCGGCC GCA AGCCGGCCGTTC TTGCCTTGCCAAGCA TERM 1297 1656385 - 1656411 + F 95 -19.5 -3.17075 | opp_overlap 1656385 1656388, overlap 1656388 CCGCACCTGACATGA GAACGGCCGGC CGCAA GCCGGCCGTTC TTGCCTTGCCAAGCA TERM 1298 1656388 - 1656408 + F 90 -15.4 -3.73068 | opp_overlap 1656388 1656385, overlap 1656385 CACCTGACATGAGAA CGGCCGGC CGCAA GCCGGCCG TTCTTGCCTTGCCAA TERM 1299 1656408 - 1656388 - f 89 -16.1 -3.47078 | opp_overlap 1656385 1656388, overlap 1656385 CACCTGACATGAGAA CGGCCGGCC GCA AGCCGGCCG TTCTTGCCTTGCCAA TERM 1300 1657296 - 1657274 - g 75 -10.4 -4.07568 | TCGCCCCGGCCAAAA CCCCGCCGGC GGT GGCGGCGGCG CTGCAGGAAGCGCTG RALTA_A1583 1656454 - 1657467 + | conserved hypothetical protein, UPF0065 TERM 1301 1657624 - 1657661 + F 75 -14.1 -3.01712 | opp_overlap 1657620, overlap 1657628 1657629 GCGCCGTATAAGGGC TCGATGCCCGCCACCAC TTCG GTGCTGGCGGGCCTTGG TGTTCGACGACCCGG TERM 1302 1657628 - 1657657 + F 77 -13.5 -3.36273 | opp_overlap 1657620, overlap 1657624 1657629 CGTATAAGGGCTCGA TGCCCGCCACCAC TTCG GTGCTGGCGGGCC TTGGTGTTCGACGAC TERM 1303 1657629 - 1657656 + F 83 -17 -2.6155 | opp_overlap 1657620, overlap 1657628 1657624 GTATAAGGGCTCGAT GCCCGCCACCAC TTCG GTGCTGGCGGGC CTTGGTGTTCGACGA TERM 1304 1658085 - 1658098 + F 74 -5.3 -4.63107 | CCGGCCTGACACCCT CGTTT TCAC AAACG TTTTCATTCTTTCCT TERM 1305 1660059 - 1660074 + G 78 -8.2 -4.24948 | CAATTTTCCCACGCG CTCGCC AGCG GGCGGG TTTTCGGTGTCCTAC HlyB 1658287 - 1660098 + | hemolysin activator translocator RALTA_A1585 1660171 - 1670580 + | exoprotein, putative adhesin or hemolysin RALTA_A1586 1670577 - 1670927 + | hypothetical protein RALTA_A1587 1671004 - 1671282 + | conserved hypothetical protein, putative HEMAGGLUTININ-RELATED gene remnant RALTA_A1588 1671662 - 1671799 + | hypothetical protein, putative gene remnant RALTA_A1589 1672060 - 1673304 + | putative transporter, Major facilitator superfamily MFS_1 RALTA_A1590 1673449 - 1673928 + | hypothetical protein TERM 1306 1673948 - 1673928 - f 72 -13.9 -2.74523 | overlap 1673925 CGACGCCGAAGACTA GCGCCCGGG ACG CCAGGGCGC GCGGCAGCACGTACA purT 1674001 - 1675206 + | phosphoribosylglycinamide formyltransferase 2 RALTA_A1592 1676570 - 1675242 - | putative Mechanosensitive ion channel, MscS subfamily sugE1 1676969 - 1676652 - | multidrug efflux system protein; quarternary ammonium compound transport protein (SMR family) RALTA_A1594 1677091 - 1677999 + | putative transcriptional regulator, LysR family RALTA_A1595 1679241 - 1678018 - | putative metal dependent phosphohydrolase; putative signal transduction protein RALTA_A1596 1679466 - 1679759 + | putative Antibiotic biosynthesis monooxygenase TERM 1307 1680314 - 1680293 - g 74 -13.7 -3.31133 | overlap 1680291 ACAACTACCAGAAGA TCGCCGGCC GGCT GGCCGACGA AACCGAGAATGCGAT RALTA_A1597 1679905 - 1680906 + | Cysteine synthase 1 prpR 1683033 - 1681060 - | transcriptional regulator; putative sigma-54 interacting regulator TERM 1308 1681674 - 1681684 + g 72 -6.8 -4.25104 | CGAGCCCGCCGATCG GCAG CAC CTGC TTTTCCTGCAGCACG prpB 1683314 - 1684222 + | 2-methylisocitrate lyase prpC 1684322 - 1685479 + | methylcitrate synthase (citrate synthase 2) TERM 1309 1685533 - 1685567 + F 100 -10.1 -4.8269 | gap 2, overlap 1685486 AGCCTGCGGGCACAG GGGGTAGTTGGTCGCTG ACA CGG-GGCC-ACTACCCC TTTTTCATACTTATA TERM 1310 1685680 - 1685637 - g 80 -16.8 -3.14931 | gap 1 GCTACCGGGCACCAA GCTGGATTACTTCGACGCGCG CGC CGCG-GTCGAGGCCATCCAGC CGGGTGCCTACGACA acnA1 1685599 - 1688211 + | aconitate hydratase 1 TERM 1311 1688279 - 1688234 - f 74 -14.7 -2.54896 | opp_overlap 1688231 1688230, overlap 1688230 1688276 CTTCTACCGAAGCCA GTGGTGTGCTCCCCTCTCCCG CTTG CGGGAGAGGGGAGAAAACAAG CGCTTCGCTTTGCTT TERM 1312 1688334 - 1688324 - f 71 -8.2 -3.89614 | TCCAATCTGTACAAA GGCC CCC GGCC TAACCAGGACTAAAC prpF 1688356 - 1689546 + | AcnD-accessory protein (DUF453) TERM 1313 1689552 - 1689608 + F 93 -18.5 -3.28712 | CGCGTTCTGAGCCAG CCGCCAGCGCATGGCGGGCGCCGGCCG GTT CGGCCCCCGCCAAGTATGCGCTTGCGG TTATGGCGGCAGCAG ansB1 1689836 - 1690954 + | periplasmic L-asparaginase II TERM 1314 1691212 - 1691188 - T 70 -7.8 -4.08767 | overlap 1691191 1691206 CGCATCGGCTCAAAA CATGGCGCTG CTCAT CAACGCCCTG GCGACCAGCACGCCC RALTA_A1604 1691655 - 1691182 - | putative acyl-CoA thioesterase RALTA_A1605 1691824 - 1692075 + | conserved hypothetical protein, DUF1289 RALTA_A1606 1692816 - 1692097 - | conserved hypothetical protein, MOSC domain (sulfur carrier) RALTA_A1607 1693520 - 1692813 - | putative Glutamine amidotransferase RALTA_A1608 1696109 - 1693650 - | Penicillin amidase, putative precursor TERM 1315 1696184 - 1696166 - R 100 -11.7 -5.14965 | opp_overlap 1696166 ATCCTGACGAAAAAA TGCCCGG GCCAG CCGGGCA TTTCCTCATGCATCG TERM 1316 1696166 - 1696184 + r 78 -11.7 -3.79747 | opp_overlap 1696166 ATCCTGACGAAAAAA TGCCCGG GCCAG CCGGGCA TTTCCTCATGCATCG RALTA_A1609 1697655 - 1696222 - | putative ALDEHYDE DEHYDROGENASE TERM 1317 1697975 - 1697925 - g 90 -16.1 -3.78775 | gap 1, opp_overlap 1697932 1697934, overlap 1697904 1697956 CGGGGCACGACGAAA TCCGCAGCCGCGCGCGCAAGCTGG ACCA CAAGCT-GCGCGCGCTGTTGCTGA TGGTCAACGGCGAGC TERM 1318 1697932 - 1697968 + G 72 -14.4 -3.23216 | gap 1, opp_overlap 1697904 1697925 1697956, overlap 1697934 CGACGAAATCCGCAG CCGCGCGCGCAAGCTGG ACCA CAAGCT-GCGCGCGCTG TTGCTGATGGTCAAC TERM 1319 1697934 - 1697966 + G 77 -15.6 -3.18023 | gap 1, opp_overlap 1697925 1697956, overlap 1697932 ACGAAATCCGCAGCC GCGCGCGCAAGCTGG ACCA CAAGCT-GCGCGCGC TGTTGCTGATGGTCA RALTA_A1610 1697879 - 1698481 + | hypothetical protein TERM 1320 1698521 - 1698504 - T 100 -14.1 -4.87626 | GGCGAACAGCAAAAA GGCCGCC CGGA GGCGGCC TTCAGCATGCAGCGG RALTA_A1611 1700169 - 1698547 - | putative transporter, ABC superfamily, atp_binding component, duplicated ATPase domains; highly similar to hypothetical E.coli ybiT TERM 1321 1699065 - 1699097 + g 79 -11.9 -4.07687 | overlap 1699053 GCACGCCGGTCTGCA CCGCGCCGTTGAGCA GGC TGCGCAGCAGCGTGG TTTTGCCCGCGCCGT ldcA 1701317 - 1700361 - | L, D-carboxypeptidase A (in murein recycling) tadA 1701898 - 1701314 - | tRNA-specific adenosine deaminase RALTA_A1614 1702385 - 1701909 - | putative 6-PYRUVOYL TETRAHYDROBIOPTERIN SYNTHASE PROTEIN TERM 1322 1702062 - 1702092 + g 79 -15.4 -3.36968 | CTGGGCCAGGTTCTC GACCGTGGGGATCG CGT CGAGCACCACGGTC TTGTGCCCTTCCATC RALTA_A1615 1703153 - 1702518 - | conserved hypothetical protein, NrdG domain (Organic radical activating enzymes) TERM 1323 1702779 - 1702797 + g 70 -12.4 -3.2794 | opp_overlap 1702767 CCAGTCGATGCCGGG CGGCACGG CAA TCGTGCCG TTGGTCTCGATCGCG TERM 1324 1703496 - 1703539 + r 81 -16.5 -2.70932 | opp_overlap 1703467 1703488 1703489 CGGGAAAGGTGATGC GCAGCGCTCGCGCCGGGCC CGTGCC GGCCCGGCGCCCGCGCGCC TACTTCAACCCGAGA RALTA_A1616 1704045 - 1703539 - | hypothetical protein RALTA_A1617 1704233 - 1704634 + | hypothetical protein RALTA_A1618 1705273 - 1704644 - | conserved hypothetical protein, COG3644 TERM 1325 1706387 - 1706338 - g 76 -13.5 -3.44051 | overlap 1706339 CGGCGAGGACCACAA GGTCGGCCAGGCCGACGATGC CGGACAGC GCTTCGCCAGGCTGGCCGACT GGACCCGCCAGCGCT TERM 1326 1706386 - 1706339 - g 77 -17 -2.66216 | overlap 1706338 GGCGAGGACCACAAG GTCGGCCAGGCCGACGATGC CGGACAGC GCTTCGCCAGGCTGGCCGAC TGGACCCGCCAGCGC RALTA_A1619 1705457 - 1706986 + | putative OXIDOREDUCTASE PROTEIN RALTA_A1620 1707060 - 1707500 + | hypothetical protein TERM 1327 1707509 - 1707478 - T 71 -10.8 -3.53012 | gap 1, opp_overlap 1707502, overlap 1707504 GCGTGGGCGTGCAAA CGCCGCCGGC-ACCG GTG CGGTAACCAGCCGCG CCCTACAGCAGGTCG puuB 1708822 - 1707512 - | gamma-Glu-putrescine oxidase, FAD/NAD(P)-binding hss 1710279 - 1708855 - | Homospermidine synthase (HSS) TERM 1328 1710473 - 1710427 - H 78 -15.2 -2.75064 | gap 1, opp_overlap 1710468, overlap 1710424 1710448 1710449 GGCCTCAGGTAACTA TTGCCGGCGCGCAC-CGGC AAACCTTGCA ACCGTGTGCGCGCCGGCAT GCGCGCCAGGGTGGA RALTA_A1623 1710553 - 1711014 + | hypothetical protein RALTA_A1624 1711420 - 1712109 + | hypothetical protein RALTA_A1625 1712294 - 1712674 + | putative transcriptional regulator TERM 1329 1712766 - 1712747 - g 71 -11.4 -3.57144 | gap 1, opp_overlap 1712746 1712753 TCGGCCATTGGGAAA CCGG-CGCC GGC GGCGACCGG CTGGTCTATCGCGAA TERM 1330 1713218 - 1713173 - g 93 -8.1 -5.14563 | gap 1, overlap 1713199 GCGCGCAGGAAAAAA CCGCGCTGCTGC-GCTGGCGCG GAA CATGGCAGCTGCCGCAGGGCAG CACGCCGACCACGCA TERM 1331 1713914 - 1713961 + G 79 -11.2 -4.08216 | gap 1, opp_overlap 1713913 AGGTGATCGACACAG TCGCATCGGC-ATTGCCGGCAGA CTT TCCGCCGGATGTGGCCGACGCGA TTTTCGACGGCATGC hipA 1712671 - 1714023 + | transcriptional repressor which interacts with HipB RALTA_A1627 1715524 - 1714442 - | putative epoxide hydrolase TERM 1332 1714800 - 1714834 + g 78 -13.6 -3.58536 | overlap 1714801 1714824 1714826 GCGCTGCGCGCGAAC GTGGCGTCATCGAAGT TCC ACTTCGGCGACGCCAG TTTCCAGATCAGTTT TERM 1333 1714801 - 1714833 + g 78 -17.1 -2.7464 | overlap 1714800 1714824 1714826 CGCTGCGCGCGAACG TGGCGTCATCGAAGT TCC ACTTCGGCGACGCCA GTTTCCAGATCAGTT TERM 1334 1715504 - 1715492 - G 73 -10.5 -3.93695 | opp_overlap 1715490 GGCAGCACCCAGAAA GCCCC GAC GGGGC AGGTTGATGGCGTTC XpsR2 1716650 - 1715718 - | transcriptional regulator TERM 1335 1717108 - 1717121 + r 79 -8.1 -4.32951 | GGCCCGGCTGATTTA GGGCT CTAT AGCCC TTTCTTGATTGAGAT RALTA_A1629 1718425 - 1717304 - | putative lipoprotein TERM 1336 1718573 - 1718599 + r 100 -23.8 -3.12668 | GATGACCGGGAGCCT GGCCTTCCGCCG TGC CGGCGGAAGGCC TTCGCTATGGCGCTA tek 1720332 - 1718623 - | membrane associated precursor, exported and processed into extracellular protein EXP XpsR1 1721439 - 1720618 - | transcriptional regulator XpsR TERM 1337 1721515 - 1721540 + H 86 -4.6 -5.18726 | ACGCGCACCAGGCCG GCGGTCGCGA AGCTGC TCGCCAACGC TTTTTATTCTCACCC RALTA_A1632 1722133 - 1723479 + | putative UDP-sugar lipid carrier transferase RALTA_A1633 1723538 - 1724647 + | putative glycosyl transferase (putative member of eps_operon) RALTA_A1634 1725971 - 1724667 - | hypothetical protein RALTA_A1635 1727157 - 1725958 - | putative Polysaccharide efflux transporter; putative membrane protein TERM 1338 1726864 - 1726831 - G 71 -9.5 -3.68351 | gap 1, overlap 1726833 GGTGTAGCAGGCAAA CAGCACGGCGGCC-GC CGC ACAGGCCGACGTGCTC AGGCCATGCCCGTAC TERM 1339 1726862 - 1726833 - G 73 -12.1 -3.42395 | gap 1, overlap 1726831 TGTAGCAGGCAAACA GCACGGCGGCC-GC CGC ACAGGCCGACGTGC TCAGGCCATGCCCGT TERM 1340 1727217 - 1727179 - R 75 -13.6 -3.05384 | GTCCCCTCGAGCGAA GGCGCCGCCCGCAGCGTC GCC GGGGCGGCCGGCAGCGCC AGCGTCTGGCCGAAC RALTA_A1636 1728386 - 1727157 - | putative Polysaccharide pyruvyl transferase TERM 1341 1728308 - 1728274 - GR 81 -12.8 -3.78022 | GCGATATCGAGGAAA CTGACCCGGCAATCCG GCA CGGCCTGGCGGATCAG ATGCCCCAGCGTTTC RALTA_A1637 1729428 - 1728349 - | hypothetical protein epsB 1731666 - 1729432 - | tyrosine-protein kinase (EPS I polysaccharide export protein epsB) epsP 1732125 - 1731688 - | low molecular weight protein-tyrosine-phosphatase (EPS I polysaccharide export protein) epsA 1733261 - 1732122 - | polysaccharide export outer membrane protein epsA precursor (EPS I polysaccharide export system) TERM 1342 1733429 - 1733446 + H 91 -9.1 -4.40358 | gap 1, overlap 1733430 GACTGGTGTGTGCAC G-GCGCGC TGG GCGCGCTC TTTTCTGCACTGCGT TERM 1343 1733430 - 1733444 + H 81 -12.8 -3.80877 | overlap 1733429 ACTGGTGTGTGCACG GCGCGC TGG GCGCGC TCTTTTCTGCACTGC galU2 1733773 - 1734669 + | UTP--glucose-1-phosphate uridylyltransferase bacA 1734726 - 1735541 + | undecaprenyl pyrophosphate phosphatase; bacitracin resistance TERM 1344 1735611 - 1735633 + F 100 -14.2 -5.08824 | opp_overlap 1735614 CACCGTTGAGAAGCA TAAGGCGCCT CGA AGGCGCCTTG TTTTTTGGATCGCGA TERM 1345 1735630 - 1735614 - f 81 -13.7 -3.56325 | opp_overlap 1735611 CGTTGAGAAGCATAA GGCGCCT CGA AGGCGCC TTGTTTTTTGGATCG RALTA_A1645 1735920 - 1736444 + | hypothetical protein TERM 1346 1736483 - 1736473 - f 73 -6.8 -4.3179 | overlap 1736475 GCAAAAAAGGAGAAA CACG ATG CGTG CCTGGTTCACGATCG RALTA_A1646 1736477 - 1737112 + | putative lipoprotein TERM 1347 1737163 - 1737147 - T 100 -13.7 -5.63103 | CGCGAAGCAAAAAAA GGCGCCT TGC AGGCGCC CGAGCATTCATTTAA RALTA_A1647 1737455 - 1737234 - | hypothetical protein TERM 1348 1737708 - 1737672 - g 75 -9.4 -4.18488 | gap 1 AGGCACTGGAAGAAA GCCTGGGCGT-GCAGTT GTTT ATCCGCGACGCCAAGGC ACTGGTCCTGACCCC gcvA1 1737533 - 1738459 + | transcriptional regulator of glycine cleavage system operon, LysR family TERM 1349 1738521 - 1738539 + T 80 -5.3 -4.83169 | gap 1, opp_overlap 1738515, overlap 1738515 1738499 1738525 GCGAAGTCAGACCGC GACGGGCA TTGA TGCC-GTC TTTTTCTGCACGCGT RALTA_A1649 1738910 - 1738512 - | putative thioesterase/thiol ester dehydrase-isomerase TERM 1350 1739052 - 1739022 - R 95 -10.3 -4.41548 | opp_overlap 1739022 1739024 CTACAGGCGATAAAA GCGCGCGGCGTTG TCGTG CCACAGCGCGCGC TGCTGTTCGGGCGGA RALTA_A1650 1739933 - 1739007 - | putative Amidohydrolase 2 TERM 1351 1739913 - 1739892 - G 70 -9.3 -3.85817 | opp_overlap 1739894 1739911 ATGCGCGTCGATAAA GGGCTCGAC GGAC GCCGCGCCC GCCGCGGGTGTGTCG RALTA_A1651 1740912 - 1739938 - | conserved hypothetical protein, UPF0065 RALTA_A1652 1742191 - 1740965 - | putative L-carnitine dehydratase/bile acid-inducible protein F RALTA_A1653 1743048 - 1742269 - | putative Enoyl-CoA hydratase/isomerase RALTA_A1654 1743324 - 1744463 + | putative Iron-containing alcohol dehydrogenase RALTA_A1655 1744509 - 1745474 + | conserved hypothetical protein, UPF0065 TERM 1352 1746471 - 1746504 + G 74 -12.3 -3.57144 | gap 1 CGGCACGCTGTTCGC GCCGGTGCAGGATCGC GAC GCGC-CCGGCGCCGGC TTTACCCATCACCCC RALTA_A1656 1745476 - 1746666 + | hypothetical protein TERM 1353 1747740 - 1747694 - g 100 -12 -5.40072 | GTTCGTGCAAAAAAA CGGCGACGCCGTGCTGCGCGCC ATG GACGCGCAGCGCTAGGAGGCCG GCCATGTCCACCTCG RALTA_A1657 1746741 - 1747733 + | putative extracellular solute-binding protein, TRAP transporter family, DctP subunit TERM 1354 1748209 - 1748186 - g 70 -14.6 -2.78816 | gap 1 GGACGGCGGATGACA GCGTGCGCGGG CAG CCCG-GCACGC TGCAGGACCCGCGCT RALTA_A1658 1747744 - 1748712 + | putative Amidohydrolase 2 RALTA_A1659 1748742 - 1749242 + | Putative small membrane component, TRAP transporter family, DctQ subunit lldD 1750576 - 1751742 + | L-lactate dehydrogenase, FMN-linked RALTA_A1663 1751797 - 1752408 + | conserved hypothetical protein; putative exported protein TERM 1355 1752471 - 1752445 - T 72 -11.6 -3.30038 | opp_overlap 1752423 CAGATGCAAATGGAA GTCTGCCAGC CTTGGGT GCCGGCAGAC GCTGCGCGAGCACGC TERM 1356 1752559 - 1752522 - T 75 -11.9 -3.64703 | gap 1 CGGCTGCCACCGAAA GGACG-TGCGGCGCGCCT TCA AGTCTCGCCGCAGCGGCC CGACGAAATCCAGCC TERM 1357 1752791 - 1752774 - T 100 -10.5 -5.56673 | ACCGAGAATAAAAAA GCCCGCA TTTT CGCGGGC TTCGAGGTGCTTTCG guaA 1754460 - 1752841 - | GMP synthetase (glutamine aminotransferase) RALTA_A1665 1755046 - 1754435 - | hypothetical protein guaB 1756688 - 1755225 - | IMP dehydrogenase RALTA_A1667 1756812 - 1757771 + | hypothetical protein RALTA_A1668 1757958 - 1758479 + | hypothetical protein TERM 1358 1758510 - 1758492 - T 89 -13.1 -4.21275 | opp_overlap 1758492 1758486 TGAAGCCATGCAAAA CGGGGCC GCACG GGCCCCG TTCGCTTTGGCGGCA TERM 1359 1758492 - 1758510 + T 74 -13.1 -3.27525 | opp_overlap 1758492, overlap 1758486 TGAAGCCATGCAAAA CGGGGCC GCACG GGCCCCG TTCGCTTTGGCGGCA RALTA_A1669 1758852 - 1758535 - | conserved hypothetical protein, UPF0125/COG2914 RALTA_A1670 1759306 - 1758869 - | conserved hypothetical protein; putative Oligoketide cyclase/lipid transport protein smpB 1759486 - 1759935 + | RNA-binding protein, component of the SsrA quality-control system. RALTA_A1672 1761010 - 1760081 - | putative stomatin_like membrane protein RALTA_A1673 1761547 - 1761113 - | hypothetical protein TERM 1360 1761589 - 1761619 + r 70 -10.4 -3.53811 | gap 1, opp_overlap 1761590, overlap 1761590 CCCGAACAAGTAAAA ACCCCGCAG-CGC CATACA GCGTCTGCGGGGC TTTGCAACACCTGAC TERM 1361 1761590 - 1761618 + r 72 -13.9 -2.72144 | gap 1, opp_overlap 1761590, overlap 1761589 CCGAACAAGTAAAAA CCCCGCAG-CGC CATACA GCGTCTGCGGGG CTTTGCAACACCTGA TERM 1362 1761618 - 1761590 - R 100 -14.6 -4.99435 | gap 1, opp_overlap 1761589 1761590 CCGAACAAGTAAAAA CCCCGCAG-CGCC ATAC AGCGTCTGCGGGG CTTTGCAACACCTGA TERM 1363 1761634 - 1761679 + r 74 -10.4 -3.80733 | opp_overlap 1761629, overlap 1761631 1761650 CTTTGCAACACCTGA CGCAGGGCCGGTGC-TTCGGCC GGCT GCCCGAGGGCGCCGGCCAT-CG TTATTGTGACGTCAA pps 1764084 - 1761700 - | phosphoenolpyruvate synthase RALTA_A1675 1764395 - 1765309 + | conserved hypothetical protein, DUF299 TERM 1364 1765326 - 1765342 + T 100 -10.8 -5.4505 | opp_overlap 1765326 GCAAGAATAAAGAAA GCGGCC GCAGG GGCCGC TTTTTTGTTGGCCGC TERM 1365 1765342 - 1765326 - T 100 -10.8 -4.78597 | opp_overlap 1765326 GCAAGAATAAAGAAA GCGGCC GCAGG GGCCGC TTTTTTGTTGGCCGC RALTA_A1676 1766163 - 1765381 - | putative TRNA/RRNA METHYLTRANSFERASE PROTEIN rnhB 1766936 - 1766160 - | RIBONUCLEASE HII PROTEIN lpxB 1768153 - 1766936 - | tetraacyldisaccharide-1-P synthase TERM 1366 1768094 - 1768127 + g 74 -16.7 -2.72344 | gap 1 GGCGATGGTGCCGCG CTTGCCCGCGGCGCTG CCG CTGC-CCGCGGGCAGG TCCTTCCGAATCGCG lpxA 1768969 - 1768166 - | UDP-N-acetylglucosamine acetyltransferase fabZ 1769564 - 1769115 - | (3R)-hydroxymyristol acyl carrier protein dehydratase lpxD 1770668 - 1769577 - | UDP-3-O-(3-hydroxymyristoyl)-glucosamine N-acyltransferase skp 1771245 - 1770718 - | periplasmic molecular chaperone for outer membrane proteins ecfK 1773601 - 1771268 - | outer membrane protein TERM 1367 1772692 - 1772702 + g 72 -6.8 -4.37711 | TGTCGCCCTTCTTCA GCTG CAG CAGC TTTTCCATTTCCTCC ecfE 1775104 - 1773701 - | membrane-associated protease TERM 1368 1775028 - 1775001 - G 78 -6.2 -4.67011 | gap 1 AAGCCGATGGAAAAA CGCAGCACCTTCA CGC CGCAGGCGC-GCG CGGCCAGGTAGTGGC dxr 1776390 - 1775209 - | 1-deoxy-D-xylulose 5-phosphate reductoisomerase TERM 1369 1775707 - 1775727 + g 72 -6.8 -4.27441 | overlap 1775708 GCCGAACAGCCAGTG CGCCTCGA TCACC TCGAGGCC TTTGTTCATCATGGT cdsA 1777223 - 1776402 - | CDP-diglyceride synthase TERM 1370 1776483 - 1776504 + g 74 -12.3 -3.62046 | overlap 1776480 CACGCCGCCATGGCC GGGCAGCAG CCGG CTGCTGTCC TTCTTGCCGACCTGG ispU 1778030 - 1777260 - | undecaprenyl pyrophosphate synthetase (di-trans, poly-cis-decaprenylcistransferase) TERM 1371 1778038 - 1778087 + r 75 -14.9 -2.72879 | gap 1, overlap 1778036 TGCTGCATGGGCGTG AGACGGTC-GCTGACAGTCCCGGC AAG GCCGGGACGGGCGTCAGACCGTCA TGATCTCCTTCTCTT frr 1778637 - 1778077 - | ribosome releasing factor pyrH 1779489 - 1778779 - | uridylate kinase TERM 1372 1778982 - 1779007 + g 77 -14.7 -3.18681 | TGGGATCCTTCTTCG GGTCGGCGGTG TACA CGCCGTCGACC TTGGTGGCCTTCAGC TERM 1373 1779638 - 1779589 - R 100 -15 -4.46212 | opp_overlap 1779575, overlap 1779634 GCCGGCAGGAGAAAA GCCGGTTTTCGGGGTGCCCCGG ACTGGA CCGGACCACCGCGAAAACAGAC TGCTGCCGCCGGACT TERM 1374 1779657 - 1779689 + r 77 -14.1 -3.28712 | opp_overlap 1779634 TGCCGCCGGACTGCC GTAGCGCAACGCGGC CGC GCCGTGCTGCACTAC TTATGCAGAGGGGCA TERM 1375 1779768 - 1779731 - R 90 -19.9 -2.78384 | gap 1 CCCTGCGGCATTATA GGCGC-CCGGACCGGC ACCGACG GCCGGCCCGGCGCGCC CCGGACATCAGCCCT tsf 1780654 - 1779776 - | protein chain elongation factor EF-Ts TERM 1376 1780801 - 1780781 - R 100 -9.6 -5.12707 | opp_overlap 1780781 TCAAATTCGAAAAAA GGGGGCGC CAGAT GTGCCCCC TTTTTTGCCCTGCTG TERM 1377 1780781 - 1780801 + r 100 -11.8 -5.06451 | opp_overlap 1780781 TCAAATTCGAAAAAA GGGGGCGC CAGAT GTGCCCCC TTTTTTGCCCTGCTG TERM 1378 1780864 - 1780880 + r 79 -13.7 -3.52475 | opp_overlap 1780825, overlap 1780852 CCCGGCGTGCCGGGC GGCAGGC GAC GCCTGCC TTGTCCTGTGTTGAC rpsB 1781682 - 1780939 - | 30S ribosomal subunit protein S2 TERM 1379 1781969 - 1781999 + H 80 -5.2 -4.82901 | overlap 1781970 1781974 CACTTTGCACCTTCG ATTCAGGCGTGGCC CGT GGCCCCGCCTTCAC TTTTTCTGGCGACGC TERM 1380 1781974 - 1781994 + H 79 -13.9 -3.49077 | overlap 1781970 1781969 TGCACCTTCGATTCA GGCGTGGCC CGT GGCCCCGCC TTCACTTTTTCTGGC map 1782018 - 1782836 + | methionine aminopeptidase TERM 1381 1782850 - 1782875 + F 78 -6.7 -4.57569 | opp_overlap 1782853, overlap 1782853 GACGCCGCGCGCAAG CCAGGGCGCCT GACC GGGCGCCCTTC TTTTTCCAGCCGTGC TERM 1382 1782853 - 1782872 + F 100 -12.8 -4.40561 | opp_overlap 1782853, overlap 1782850 GCCGCGCGCAAGCCA GGGCGCCT GACC GGGCGCCC TTCTTTTTCCAGCCG TERM 1383 1784011 - 1784029 + G 82 -16 -3.28712 | CGTGAAGGGACTGGC CCCGCGCA CGC TGCGCGGG TTGTACAACGCCCGC TERM 1384 1785274 - 1785241 - g 77 -14.5 -3.14344 | gap 1, opp_overlap 1785238 1785237 CAGCTTCCCGATCAA GCCGCGCGTCGACCTG CGC CCGGACGA-GCGCGGC CAGTATTACCTGCTG glnD 1782914 - 1785496 + | uridylyltransferase RALTA_A1694 1785519 - 1787342 + | putative 16S rRNA uridine-516 pseudouridylate synthase TERM 1385 1787368 - 1787352 - T 95 -10.8 -4.62069 | opp_overlap 1787352 TTCTGATGTGAAAAA GCGGCC GGAAT GGCCGC TTTTTTCGGGGGGGT TERM 1386 1787352 - 1787368 + T 100 -11.5 -5.00884 | opp_overlap 1787352 TTCTGATGTGAAAAA GCGGCCG GAA TGGCCGC TTTTTTCGGGGGGGT RALTA_A1695 1788111 - 1787578 - | putative POLYPEPTIDE DEFORMYLASE PROTEIN TERM 1387 1787666 - 1787642 - G 81 -7.9 -4.62471 | overlap 1787644 CCGAAGTTCGAAAAA TCCTTGATCCG CAT CGGATAAAGAA TCCCCTGCAGATGGT ligA 1790256 - 1788127 - | DNA ligase TERM 1388 1788717 - 1788733 + g 70 -12.3 -3.31144 | GCTCCAGCGCGGCCA GCTTGGC GAC GCCAAGC TTGTACAGGTCGGCC TERM 1389 1790205 - 1790244 + g 93 -14.3 -4.15565 | gap 2, overlap 1790211 CGTCGGCCGGCAAGG CGCCGGCGGGCGCGGAGGC CTCT GCCTGCGCGC-CGC-GGTG TTTTGCGGTCATGGG TERM 1390 1790211 - 1790241 + g 70 -14.7 -2.80098 | gap 1, overlap 1790205 CCGGCAAGGCGCCGG CG-GGCGCGGAGGC CTCT GCCTGCGCGCCGCG GTGTTTTGCGGTCAT RALTA_A1697 1791604 - 1790270 - | conserved hypothetical protein, Cell-division protein ZipA C-terminal domain; putative membrane protein TERM 1391 1790416 - 1790444 + g 74 -15.3 -3.01924 | overlap 1790442 CGTCGACCAGCTGCG CGCCCATGCGCTG CGC CAGCGTATGGCCG TATTCGCACACGGTC TERM 1392 1790651 - 1790624 - G 86 -13.4 -3.89346 | CTGGTAGCGGATAAA GCGGGTGCCGTC GCGC GACAGCACCAGC CCGTCTTGCGTGGCC TERM 1393 1791293 - 1791317 + g 81 -18.5 -2.73364 | ATCGGCAGTGCTGGC CGCCGCGGCCG CGG CGGCAGCGGCG TGATTGCGGTCAGCC TERM 1394 1791379 - 1791403 + g 72 -14.2 -3.14564 | ACAGCGTGGGCTCGC GCCGCGGCGG CTGCT CGGCCGCGGC TTCGTGCAGGCGTGC smc 1795116 - 1791601 - | Chromosome segregation protein SMC TERM 1395 1793100 - 1793113 + g 76 -8.1 -4.37711 | opp_overlap 1793085, overlap 1793085 GCAGCTGCGCGCGCG CCTGC TTCT GCAGG TTTTCGATTTCCTGC TERM 1396 1795842 - 1795859 + G 71 -2.5 -4.57569 | overlap 1795844 CCGGAATTCGACTGG GAGCGGG GCTA CGCGCGC TTTTTCGCCGAGTAC RALTA_A1699 1795557 - 1796384 + | putative ferritin-like protein RALTA_A1700 1797365 - 1796397 - | conserved hypothetical protein, DUF6; putative TRANSMEMBRANE PROTEIN RALTA_A1701 1797573 - 1798787 + | putative AMINOTRANSFERASE TERM 1397 1799286 - 1799318 + G 76 -14 -3.39895 | CGCCAAGGCGGGCTT CCGCGTCGTGCCGC CCGCC GTGGCCCGCCGCGG TTCGTTCATCGCGAA dapD 1798972 - 1799799 + | 2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase TERM 1398 1799827 - 1799855 + F 81 -13.7 -3.62096 | overlap 1799828 GCCCGCATGGGCCGC GCCGCCCCGGGGC CCT GCTCCGGGGCCGA TTTACCGTCGTCACC TERM 1399 1799828 - 1799854 + F 84 -17.2 -2.77043 | overlap 1799827 CCCGCATGGGCCGCG CCGCCCCGGGGC CCT GCTCCGGGGCCG ATTTACCGTCGTCAC RALTA_A1703 1799889 - 1800272 + | hypothetical protein RALTA_A1704 1800328 - 1800675 + | putative oxidoreductase, Ars family dapE 1800695 - 1801846 + | N-succinyl-diaminopimelate deacylase RALTA_A1706 1801871 - 1802764 + | putative Adenine-specific methyase RALTA_A1707 1802913 - 1804181 + | putative transporter, MFS family RALTA_A1708 1804391 - 1805398 + | conserved hypothetical protein, UPF0065 RALTA_A1709 1805465 - 1807015 + | putative AMP-dependent synthetase and ligase TERM 1400 1807076 - 1807044 - T 72 -4 -4.67353 | gap 1, opp_overlap 1807051 1807053 1807056, overlap 1807046 GCACGCACGCAAAAA GTCGCGCGGGAGTGC TTGC GCAATCGCGC-CGGC CTCTCTATAATTCGC TERM 1401 1807226 - 1807186 - T 83 -14.7 -3.43676 | opp_overlap 1807187 1807193, overlap 1807191 1807193 CCTACCAACGCACAA TGGAACACGGACGGTACGC ATC GCGCACCGTCCGTTTTTCT TTTGGGGCATCGACG TERM 1402 1807187 - 1807225 + T 100 -18.2 -4.09685 | opp_overlap 1807186 1807191 1807193, overlap 1807193 CTACCAACGCACAAT GGAACACGGACGGTACGC ATC GCGCACCGTCCGTTTTTC TTTTGGGGCATCGAC TERM 1403 1807221 - 1807191 - T 89 -17.6 -3.2496 | opp_overlap 1807187 1807193, overlap 1807186 1807193 CAACGCACAATGGAA CACGGACGGTACGC ATC GCGCACCGTCCGTT TTTCTTTTGGGGCAT TERM 1404 1807219 - 1807193 - T 95 -20.2 -3.18321 | opp_overlap 1807187 1807193, overlap 1807191 1807186 ACGCACAATGGAACA CGGACGGTACGC ATC GCGCACCGTCCG TTTTTCTTTTGGGGC TERM 1405 1807193 - 1807219 + T 100 -18 -5.45802 | opp_overlap 1807193 1807191 1807186, overlap 1807187 ACGCACAATGGAACA CGGACGGTACGC ATC GCGCACCGTCCG TTTTTCTTTTGGGGC RALTA_A1710 1808457 - 1807297 - | putative acyl-CoA transferase/carnitine dehydratase TERM 1406 1807848 - 1807870 + g 70 -12.7 -3.28712 | gap 1 ACAGCCGCACATGCC GGCCGCG-GC CGCT GCGCGCGGCC TTGTACAACGCCGCG RALTA_A1711 1809484 - 1808471 - | putative Zinc-containing dehydrogenase RALTA_A1712 1810502 - 1809495 - | conserved hypothetical protein, UPF0065 TERM 1407 1810251 - 1810263 + g 71 -10.5 -3.7941 | GGTGCCGGTGGTGGT GCCCG CGC CGGGC TTGTTGTCGACGATC RALTA_A1713 1810686 - 1811585 + | putative transcriptional Regulator; LysR family RALTA_A1714 1812564 - 1811611 - | putative phosphatidate Cytidylyltransferase RALTA_A1715 1813196 - 1812570 - | putative Phospholipid/glycerol acyltransferase RALTA_A1716 1813658 - 1813203 - | hypothetical protein RALTA_A1717 1815048 - 1813672 - | putative protein phosphatase (S/T or Tyr) RALTA_A1718 1816814 - 1815045 - | putative methylase phospholipase-related RALTA_A1719 1817445 - 1816819 - | putative CDP-alcohol phosphatidyltransferase TERM 1408 1817473 - 1817505 + r 78 -10.6 -4.03167 | overlap 1817474 CCTGCCGAGCTGATG C-CGGAAGCGCACCGC GCC GCGGC-CGCTTCCGTG TTGTTCTTGGTGTTG TERM 1409 1817474 - 1817503 + r 85 -14.3 -3.59107 | gap 1, overlap 1817473 CTGCCGAGCTGATGC CGGAAGCGCACCGC GCC GCGGC-CGCTTCCG TGTTGTTCTTGGTGT RALTA_A1720 1818712 - 1817642 - | hypothetical protein TERM 1410 1818178 - 1818230 + g 72 -13.2 -3.16564 | opp_overlap 1818158 CCGGATCCTGGTACT GGCCGCTGCTGACCGCGGCCTGGT ACCAC GCCATGCCGCGCTCGGCCACCGCC TTCATCAGCTGCGCC RALTA_A1721 1819540 - 1818776 - | hypothetical protein RALTA_A1722 1820443 - 1819625 - | putative D-amino peptidase, DppA family TERM 1411 1819866 - 1819917 + g 80 -16.4 -3.1978 | gap 1, overlap 1819864 1819867 GCCGCCGCAATGGCT TCGCGCGCGGCCGTCGGCGACAGCG AGG CGCCGCTGCCGAAG-CCGCCCGCGG TCTTGGTCTCGACAT TERM 1412 1819867 - 1819916 + g 77 -17.7 -2.51547 | gap 1, overlap 1819866 1819864 CCGCCGCAATGGCTT CGCGCGCGGCCGTCGGCGACAGCG AGG CGCCGCTGCCGAAG-CCGCCCGCG GTCTTGGTCTCGACA RALTA_A1723 1821489 - 1820443 - | putative D-AMINO PEPTIDASE, DmpA family TERM 1413 1820739 - 1820705 - G 85 -17.1 -3.1855 | TGCCCGAACACCGAA CCGGTGCGCGCCAGC CCCGC GCCGGCGCGCAGCGA CAGCCGGCGCAGCTG RALTA_A1724 1822406 - 1821492 - | putative dipeptide ABC transporter, membrane component RALTA_A1725 1823334 - 1822414 - | putative dipeptide ABC transporter, membrane component TERM 1414 1823399 - 1823352 - R 95 -13.2 -4.28111 | gap 1, opp_overlap 1823358 1823397 CACACCATGAAGAAA GGCCGCGGGCCGCCCGCCTGCGA ACC CCGC-GACGCGAGGCAGGCGGCC GTCTGTCGGCTTACT RALTA_A1726 1825129 - 1823573 - | putative dipeptide ABC transporter, periplasmic_binding component TERM 1415 1823782 - 1823792 + g 86 -6.8 -4.91109 | CGGCGATGTCCGCGT CGAC CTG GTCG TTTTTGTAGTAGGCG RALTA_A1727 1827014 - 1825158 - | putative oligopeptide ABC transporter, fused atp_binding components TERM 1416 1825240 - 1825195 - G 78 -6.7 -4.63218 | gap 1, overlap 1825196 1825197 TGCCGCGCAACAAAA TGGCCGAGCGCGCCGCTGCCGG CGA CCTGCACCAGCG-GCTGCACCA CCGGCTCGTCGCCGA TERM 1417 1825315 - 1825347 + g 82 -6.2 -4.8048 | gap 1 CGCAGGTGGCGCCGC GCCGG-GTCGGCGAT CGGC ACCGCCGACATCAGC TTTTTCGTGTACGGG TERM 1418 1826053 - 1826001 - G 90 -20 -3.17797 | gap 2 GGGATAGAGATCGAA GCTGACCTGCTCCACCGCGTGCACGC GCC GCGT-CACGCGGCCGAACAGGCC-GC CGGGGACGTCGAATC TERM 1419 1826717 - 1826748 + g 74 -14.4 -3.28712 | gap 1, opp_overlap 1826711 1826708 GGAAGATCATCGCCA CGTCGGCGCCGCGCA CGC TGCGCAGCGTCG-CG TTGTCCGCGCGCACC iaaA 1828082 - 1827111 - | L-asparaginase RALTA_A1729 1829053 - 1828091 - | putative transcriptional regulator; RpiR family TERM 1420 1829285 - 1829321 + G 93 -6.4 -5.36364 | gap 1, opp_overlap 1829277 1829276 CTACAATGCGGGCCA GCGCC-ACAGCGCAGGC CGCG GCCCGCGTTCACGGCGC TTTTTCTGTTTTTCA TERM 1421 1829679 - 1829641 - g 80 -16.7 -3.12351 | gap 1 CTGCGCGAGATCGAA GCCGCCATTGCCGC-GGC GCAG GCCAGCGGCGACGGCAGC GCCGAAGGCGAAGCC TERM 1422 1830997 - 1830981 - g 75 -9.3 -4.12188 | overlap 1830982 GCACCAGGCGGAAAA CGCCGGC GAG GCCGCCG TCAACCGCAAGGACC TERM 1423 1831125 - 1831096 - g 71 -2.8 -4.66264 | gap 1, overlap 1831100 GAAAAGGTCGAAAAA CGC-ATGGCGG TGCTGCAGT CCGCCAAAGCG GAGATCGACCAGTTC RALTA_A1730 1829275 - 1831284 + | putative ABC transporter, atp_binding component TERM 1424 1831327 - 1831355 + T 100 -23.3 -4.13872 | opp_overlap 1831327 1831333, overlap 1831333 CGCACCACCGCAAAA GAGAAACGGCGCC GAT GGCGCCGTTTCTC TTTGTGTCGTTCGCT TERM 1425 1831355 - 1831327 - T 100 -23.3 -4.15565 | opp_overlap 1831327 1831333, overlap 1831333 CGCACCACCGCAAAA GAGAAACGGCGCC GAT GGCGCCGTTTCTC TTTGTGTCGTTCGCT TERM 1426 1831333 - 1831349 + T 100 -15.1 -4.43283 | opp_overlap 1831333 1831327, overlap 1831327 ACCGCAAAAGAGAAA CGGCGCC GAT GGCGCCG TTTCTCTTTGTGTCG TERM 1427 1831349 - 1831333 - T 100 -15.1 -4.45771 | opp_overlap 1831327 1831333, overlap 1831327 ACCGCAAAAGAGAAA CGGCGCC GAT GGCGCCG TTTCTCTTTGTGTCG dsbB 1831867 - 1831382 - | disulfide bond formation protein RALTA_A1732 1832575 - 1832012 - | putative GCN5-related N-acetyltransferase TERM 1428 1832377 - 1832342 - G 70 -8.2 -3.87815 | overlap 1832352 GTGCAGTCCGACAAA GCCGAGGAAGGCATCG TCGG CGATGCGTTCGACGAC CCAGACGCCCCACCC radA 1833940 - 1832579 - | DNA repair protein TERM 1429 1833992 - 1833962 - R 70 -7.5 -4.06419 | overlap 1833963 1833983 TCCTTGCAGAAAGAA TCGAGCCGGGT GTGAAAGCG ACCCGGCCCGC GGAAGTGGCGTAGTG dadX 1835218 - 1834097 - | alanine racemase 2, PLP-binding TERM 1430 1835284 - 1835247 - H 79 -11.1 -3.89524 | gap 1, opp_overlap 1835281 AGGGTAGCGGACAAA GCCGGCAGCG-GCGCGGG CGG CTCACGCGCGCGGCGGGC TGGAGGGACGGCTCT TERM 1431 1835613 - 1835599 - H 82 -11.4 -4.03234 | opp_overlap 1835598 1835597 1835595 TTTTCGTGATATAAA GCCGGA CGC TCCGGC CATGTTCTAAAAGCG RALTA_A1735 1835798 - 1837117 + | putative transporter, MSF family RALTA_A1736 1838287 - 1837160 - | hypothetical protein TERM 1432 1837903 - 1837845 - G 79 -7.9 -4.52589 | gap 2, overlap 1837846 TCGCGCCAGACAAAA TCCAGCTCGCCGA-GC-GTGCGCACGCCG TGC CGGCTCGCGCGCCGCACCGGCACGTTGGC GGCCAGCAGCGACAG RALTA_A1737 1839137 - 1838268 - | putative uracil-DNA glycosylase,phage-related protein TERM 1433 1838868 - 1838907 + g 80 -16.3 -3.14602 | overlap 1838867 TTCCCCCTGGACATC GGCGGCGCCGGGGCCTG CAGGCA CCGGTTCCGGCGCCACC TGTTCATCGGCTGCC rimL 1839694 - 1839134 - | acetylase for 30S ribosomal subunit protein S18 TERM 1434 1839714 - 1839752 + r 71 -13.6 -2.62263 | CGCTCCCCGGCTGGG CCGCCGCGCGCGCCGCCG CAA CGGCCTCGCGTTCGGCGA TGGTCTGGGCGACCT RALTA_A1739 1840446 - 1839691 - | putative peptidase TERM 1435 1840311 - 1840343 + g 78 -17 -2.82516 | gap 1, opp_overlap 1840300 GCAATTCGCCGGCGA CCGGCAGCACGCGCG CCGA CGAGCGTGC-GCCGG TGTGCTCATGGCGCA RALTA_A1740 1840575 - 1840844 + | putative ACYL-COA-BINDING PROTEIN RALTA_A1741 1842351 - 1840870 - | putative MFS transporter, EmrB family RALTA_A1742 1842824 - 1842348 - | hypothetical protein TERM 1436 1842855 - 1842877 + H 81 -4.1 -4.96848 | gap 1, opp_overlap 1842856, overlap 1842856 AAGTCGATATTATGA AGTCTCCGCG TATT CGCG-AGACC TTTTTGTCTGCGCAG TERM 1437 1843412 - 1843422 + G 70 -3.2 -4.4009 | overlap 1843402 1843398 TCGGACCCGTTCGGG CACG GGC TGTG TTTTGTCGAATGGAA RALTA_A1743 1843022 - 1843468 + | putative Glyoxalase/bleomycin resistance protein/dioxygenase TERM 1438 1843462 - 1843490 + F 76 -9.4 -4.09739 | GTACGGGGCGGTGGC CGACTGAGCCGC CGCGC GCGGCACGGGCG TTTTCGGACGATTCG chpBI 1843631 - 1843879 + | PemI-like protein; antitoxin of a toxin-antitoxin system chpBK 1843873 - 1844193 + | PemK-like protein; toxin of a toxin-antitoxin system TERM 1439 1844419 - 1844447 + G 77 -11.7 -3.85698 | gap 1, opp_overlap 1844417, overlap 1844417 1844421 CGTCTTTCATCAAGC GCCTGGCGGCGG CTGTGT CCGCCGTC-GGC TTTATCGCCGCGGGC TERM 1440 1844845 - 1844816 - g 75 -6.3 -4.4078 | gap 1, overlap 1844817 1844818 CCCCTCCAATGAAAA CCGCGCGC-TGCTG TTG CTGCAGGCGCAAGG CGTGATCAAACTGAA metQ2 1844397 - 1845206 + | DL-methionine transporter subunit ; periplasmic-binding component of ABC superfamily TERM 1441 1845415 - 1845446 + F 100 -14.6 -4.39426 | opp_overlap 1845422, overlap 1845422 CTGGGCACCACAATT CAAGAAAGGTCTGC GCAT GCAGGCCTTTTTTG TTTTGTCCCGCTATC TERM 1442 1845422 - 1845439 + F 100 -9.1 -5.86976 | opp_overlap 1845422, overlap 1845415 CCACAATTCAAGAAA GGTCTGC GCAT GCAGGCC TTTTTTGTTTTGTCC TERM 1443 1845439 - 1845422 - f 73 -6.9 -4.27467 | opp_overlap 1845422 1845415 CCACAATTCAAGAAA GGTCTGC GCAT GCAGGCC TTTTTTGTTTTGTCC RALTA_A1747 1845431 - 1847110 + | putative beta-lactamase RALTA_A1748 1847180 - 1848040 + | putative Metal-dependent hydrolase or Beta-lactamase RALTA_A1749 1849153 - 1848050 - | Mandelate racemase or muconate lactonizing enzyme RALTA_A1751 1849822 - 1849370 - | hypothetical protein TERM 1444 1850299 - 1850284 - g 100 -6.8 -5.64873 | gap 1, overlap 1850285 1850286 GGCAAGAAGAAAAAA GCGCCGG CGC CCGGC-C GTGCCCAGGCCAGCC RALTA_A1752 1849915 - 1850331 + | hypothetical protein RALTA_A1753 1851330 - 1850344 - | conserved hypothetical protein, UPF0065 TERM 1445 1850518 - 1850539 + g 71 -11.6 -3.61103 | CTTGCGCACTGCGGC GGAGACCG CCTCCA CGGTCTCC TTTGGCATCGCCTTC TERM 1446 1851400 - 1851416 + H 73 -10.8 -3.55444 | TAGAGAGTGTTCAGG CCCGGG ACATG CCCGGG TTTCCACCATGGGCG TERM 1447 1852117 - 1852128 + G 81 -3.6 -4.81551 | ATCAACACCTTTACA CGGC AGTC GCTG TTTTTCCTGTCGATC TERM 1448 1852718 - 1852698 - g 100 -13.9 -4.59773 | CCTGACCGGGAAAAA GCCGACCGC GCC GCGGGCGGC CAGCACCATCGAATC TERM 1449 1852942 - 1852910 - g 95 -22.7 -3.01712 | opp_overlap 1852904 1852902 1852900 CGGGGCTGTGGAACA GCGGCACCGGGCGCA TCG TGCGGCCGGCGCCGC AGGACATGCTGTTCT RALTA_A1754 1851634 - 1853397 + | putative ABC transporter, ATP-binding component RALTA_A1755 1853512 - 1854030 + | putative LIPOPROTEIN RALTA_A1756 1854560 - 1854084 - | putative bacterioferritin RALTA_A1757 1855015 - 1854632 - | putative universal stress protein, UspA family TERM 1450 1854764 - 1854778 + g 73 -10 -3.85817 | CTGGTGCCTTGCCGC GGCATC GAT GATGCC TTTGTAGGGAACGGT phaB2 1855998 - 1855255 - | Acetoacetyl-CoA reductase TERM 1451 1856166 - 1856217 + r 80 -14.6 -3.23853 | gap 3, overlap 1856165 GCGGGAGATATGGTG TCGCGGTGC-CGCAGGCCCGGGAAC GCGGG GTTCCCGG-CCTGCATGC-CTGCGA TCTTGGTTCAGCGCG phaP2 1856816 - 1856265 - | phasin; polyhydroxyalkanoate synthesis and granule formation regulator/factor TERM 1452 1857114 - 1857131 + r 77 -12.7 -3.64703 | opp_overlap 1857114 AAAGGCGAAAAAAAA CCGCAGC CGAA GCTGCGG TTTCCATGGAGCGGC TERM 1453 1857131 - 1857114 - R 100 -12.7 -5.82388 | opp_overlap 1857114 AAAGGCGAAAAAAAA CCGCAGC CGAA GCTGCGG TTTCCATGGAGCGGC aceB 1858750 - 1857164 - | malate synthase A RALTA_A1761 1859502 - 1858801 - | putative 2-HALOALKANOIC ACID DEHALOGENASE PROTEIN RALTA_A1762 1859584 - 1859676 + | doubtful cds TERM 1454 1860338 - 1860307 - g 78 -15.8 -3.01712 | gap 1 GGCCGCGCCGGAATA CCTGGCGCGCGCGGG GCG CCCGCAAGCGCC-GG AGGACCTGCAGCGCC RALTA_A1763 1859729 - 1860745 + | putative TRANSCRIPTION REGULATOR; LysR family RALTA_A1764 1860919 - 1861353 + | putative universal stress protein; UspA family TERM 1455 1861417 - 1861377 - T 100 -26.3 -2.71712 | opp_overlap 1861382, overlap 1861382 CGCGGCGCGCCAAAG CAAAACCGCCCGCACCGGC TAG ACCGGTGCGGGCGGTTTTT TTGCTTGCCCAGGCC TERM 1456 1861382 - 1861412 + T 100 -25.5 -5.63103 | opp_overlap 1861382 1861377 CGCGCCAAAGCAAAA CCGCCCGCACCGG CTAGA CCGGTGCGGGCGG TTTTTTTGCTTGCCC TERM 1457 1861412 - 1861382 - T 100 -26.2 -4.54727 | opp_overlap 1861382, overlap 1861377 CGCGCCAAAGCAAAA CCGCCCGCACCGGC TAG ACCGGTGCGGGCGG TTTTTTTGCTTGCCC RALTA_A1765 1862196 - 1861435 - | putative peptidase, putative lipoprotein TERM 1458 1862382 - 1862353 - R 100 -10.7 -5.42259 | gap 1, overlap 1862354 1862375 1862376 TGAGGGGCAAAAAAA TCGCGCCGT-CCCT GAG AGAGAACGGCGCGT CGCCTAAAAGAGAGC TERM 1459 1862381 - 1862354 - R 89 -14.2 -3.84633 | gap 1, overlap 1862353 1862375 1862376 GAGGGGCAAAAAAAT CGCGCCGT-CCCT GAG AGAGAACGGCGCG TCGCCTAAAAGAGAG TERM 1460 1862420 - 1862392 - R 90 -13.9 -4.07568 | GCGCGTCGCCTAAAA GAGAGCGCGTG ATGGTCG CACGCGCTCCC GATCCCGCCGGACCC aceA1 1863758 - 1862463 - | isocitrate lyase TERM 1461 1862775 - 1862805 + g 78 -12.7 -3.68222 | gap 1, overlap 1862778 GCCCAGCTCGCGCTG GAACCTGG-CGATG GTGG CGTCGTCCAGGTTC TTCTTCCAGTTGAAC TERM 1462 1862778 - 1862802 + g 72 -8.6 -3.97139 | gap 1, overlap 1862775 CAGCTCGCGCTGGAA CCTGG-CGATG GTGG CGTCGTCCAGG TTCTTCTTCCAGTTG TERM 1463 1864089 - 1864076 - R 81 -3.7 -5.04385 | CACATTGTGAAAAAA GCGGC AGAT GCGGC GCAAGCGTGTCAGTG RALTA_A1767 1865058 - 1864099 - | putative oxidoreductase; Alpha/beta hydrolase fold TERM 1464 1864200 - 1864162 - G 70 -8.7 -3.94409 | overlap 1864163 GATATGATCGACAAA TTCGCTGACCATGGCGG CAAAC CCGGCAGGGTCGGCGAG CGGCAGCCAGTGCTG RALTA_A1768 1865597 - 1865181 - | hypothetical protein rraA 1866097 - 1865600 - | ribonuclease E (RNase E) inhibitor protein ilvG1 1867885 - 1866146 - | ACETOLACTATE SYNTHASE ISOZYME II (LARGE SUBUNIT) PROTEIN RALTA_A1771 1869192 - 1867930 - | putative transporter, Major facilitator superfamily MFS_1 TERM 1465 1869262 - 1869245 - R 100 -9.1 -5.40072 | overlap 1869247 CGGCGGGCAAAAAAA TACGGGC CGAA GCCCGCA TCATAGAGGAAAACC TERM 1466 1869260 - 1869247 - R 83 -9.5 -4.34482 | overlap 1869245 GCGGGCAAAAAAATA CGGGC CGAA GCCCG CATCATAGAGGAAAA TERM 1467 1869302 - 1869276 - R 95 -10.7 -4.40237 | opp_overlap 1869284, overlap 1869268 CATCATAGAGGAAAA CCCCTGCCCGC TGCTG GCGGGCGGCGG CCACGCCGCCCCGCC RALTA_A1772 1870149 - 1869325 - | putative RESPONSE REGULATOR; LytTr family RALTA_A1773 1871433 - 1870258 - | putative SENSOR HISTIDINE KINASE TERM 1468 1870375 - 1870390 + g 71 -10.4 -3.70446 | CGTCAGGCGCACCAC CACGCC GCGC GGCGTG TTCTCTTCCATCTGC TERM 1469 1870569 - 1870606 + g 72 -8.4 -4.07568 | gap 1 ACAGCCGGATATGGC CGCCGATCATGCAGGGC TCGAT GCCGTGCGTGACCG-CG TTTTCCACCAGCGGC RALTA_A1774 1871901 - 1871494 - | hypothetical protein cbl 1873091 - 1872147 - | transcriptional regulator of cysteine biosynthesis and aliphatic sulfonates utilization; LysR family cysA 1874200 - 1873088 - | thiosulfate transport protein; ABC transporter, ATP-binding component cysW 1875138 - 1874197 - | thiosulfate transport protein; ABC superfamily, membrane component cysT 1876096 - 1875140 - | thiosulfate transport protein; ABC superfamily, membrane component RALTA_A1779 1876925 - 1876254 - | conserved hypothetical protein, Alpha/Beta hydrolase family of unknown function, DUF1234 RALTA_A1780 1877797 - 1876922 - | hypothetical protein TERM 1470 1877815 - 1877839 + r 89 -17.1 -3.21099 | TGATCCTTGGGTTGG CCGGGCCGCCG GGC CGGCGGTCTGG TTGGTGGTGGGCAAG TERM 1471 1877941 - 1877977 + r 82 -14.4 -3.28712 | gap 1 TGTCGATATGCGCCG GCCGGCACTGGGGCGCA AGCG TG-GCCGCAGCGCCGGC TTGTCAGGCAGCCCA ssuB 1878898 - 1877981 - | ALIPHATIC SULFONATES transport protein; ABC TRANSPORTER, ATP-BINDING component TERM 1472 1878145 - 1878110 - G 71 -11.1 -3.54424 | gap 2, overlap 1878111 CTCCAGTTGCGCAAA GC-CCGCCGC-GCCGCG TTCG CGCGGCCGCGCCAGCGC CACGCGCGTGTCCAT ssuC 1879738 - 1878935 - | alkanesulfonate transport protein; ABC superfamily, membrane component TERM 1473 1879605 - 1879622 + g 70 -12.7 -3.28791 | GGGGCCGGCAGCACG CGGCTGG ACAG CCAGCCG TTCTGCGACGCCAGT ssuD 1880925 - 1879753 - | alkanesulfonate monooxygenase, FMNH(2)-dependent ssuA1 1881982 - 1880954 - | alkanesulfonate transport protein; ABC superfamily, substrate binding unit ssuE 1882765 - 1882142 - | NAD(P)H-dependent FMN reductase, sulfate starvation-induced protein TERM 1474 1882314 - 1882298 - G 74 -15.1 -3.05596 | opp_overlap 1882309 CAGCGCGGCATCGAA GCGCGCG TGG CGCGCGC CGGCGGCCTCGACCG TERM 1475 1882787 - 1882835 + r 100 -15.9 -4.56133 | gap 2, overlap 1882788 TCCTTGTTCTGTTGG ACCGG--CCAGCGCCGCGGCCGC CCCAT GCGACCGCGGCGCCGGTTCCGGG TTTTAGTTCTTGCCG TERM 1476 1882788 - 1882834 + r 93 -19.4 -3.32957 | gap 2, overlap 1882787 CCTTGTTCTGTTGGA CCGG--CCAGCGCCGCGGCCGC CCCAT GCGACCGCGGCGCCGGTTCCGG GTTTTAGTTCTTGCC cysP 1883842 - 1882838 - | thiosulfate transport protein; ABC superfamily, periplasmic and binding component TERM 1477 1883967 - 1883982 + r 71 -4.6 -4.42653 | opp_overlap 1883957 CGGAACGAAGGCTTT CGCCGA TCCT TCGCCG TTTTCTGCATAAGAT TERM 1478 1884087 - 1884120 + r 84 -13.7 -3.80625 | opp_overlap 1884090, overlap 1884088 GACACGCCCAAAAGA AAACGCCCGCACCGG CAAA CCGGTGCGGGCGAAG TTTCCATTCTGGAAA TERM 1479 1884088 - 1884119 + r 87 -17.2 -2.88054 | opp_overlap 1884090, overlap 1884087 ACACGCCCAAAAGAA AACGCCCGCACCGG CAAA CCGGTGCGGGCGAA GTTTCCATTCTGGAA TERM 1480 1884117 - 1884090 - R 100 -24.2 -5.08255 | opp_overlap 1884088 1884087 ACGCCCAAAAGAAAA CGCCCGCACCGG CAAA CCGGTGCGGGCG AAGTTTCCATTCTGG TERM 1481 1884177 - 1884147 - R 71 -11.3 -3.51161 | gap 1 GAAACGGGTAGACAA GTCATGAAGA-GCG CCCC CGCATCTCCATGAC AGGGCAGATCTTATC RALTA_A1787 1884782 - 1884243 - | putative Bacterioferritin RALTA_A1788 1885044 - 1885310 + | hypothetical protein RALTA_A1789 1886462 - 1885266 - | putative Cys/Met metabolism; PLP-dependent enzyme TERM 1482 1885630 - 1885644 + g 71 -2.7 -4.58685 | overlap 1885641 CTGTAGTACACAGCC CCGAC ATCGC GCCGG TTTTTCAACCAGTTT RALTA_A1790 1887740 - 1886478 - | putative Major facilitator superfamily MFS_1 RALTA_A1791 1888479 - 1887742 - | putative Pyrroloquinoline quinone (Coenzyme PQQ) biosynthesis protein C RALTA_A1792 1889050 - 1888481 - | putative acetyl-transferase TERM 1483 1888581 - 1888553 - G 72 -6.7 -4.30719 | GGGTTGCACAAGAAA GTGTCCGCGATAA ACC TCATCGCCTACAC GTGCATAGTCATCGA RALTA_A1793 1889233 - 1890210 + | putative transcriptional regulator ; Arac family TERM 1484 1890251 - 1890274 + T 81 -15.2 -3.06796 | opp_overlap 1890251 CCCAATAAAGAAAAA GCCCCCGCGC TATT GCGCAGGGGC TTGAGTGCGATCGGC TERM 1485 1890274 - 1890251 - T 100 -17.4 -5.47159 | opp_overlap 1890251 CCCAATAAAGAAAAA GCCCCCGCGC TATT GCGCAGGGGC TTGAGTGCGATCGGC clpB1 1892945 - 1890357 - | Chaperone RALTA_A1795 1894050 - 1893169 - | putative oxidoreductase phaY1 1896191 - 1894050 - | D--3-HYDROXYBUTYRATE OLIGOMER HYDROLASE RALTA_A1797 1897859 - 1896306 - | O-succinylbenzoate--CoA ligase TERM 1486 1896428 - 1896390 - G 73 -10.3 -3.93583 | opp_overlap 1896398 CAATGCATCGACAAA GCGCACGTGGCGCGGC-AC CTT GTAGCCG-GCAAGGTGCGC CCTGCAATGGGCGAC RALTA_A1798 1898950 - 1897874 - | putative ABC TRANSPORTER, membrane component TERM 1487 1898669 - 1898611 - G 77 -14.5 -3.24924 | gap 2, opp_overlap 1898656, overlap 1898585 1898609 1898624 CCCGCAGCGAGAACA GCCCGATCAGCAAGGCCAGCAGCGCCGAC ACC GCCAGCGC-GCCGGCCGTGCCGGCCAG-C AACGCGCCCCAGCCC TERM 1488 1898657 - 1898624 - G 80 -16.7 -3.21416 | gap 1, opp_overlap 1898656, overlap 1898609 1898611 CAGCCCGATCAGCAA GGCCAGCAGCGCCGAC ACC GCCAGCGC-GCCGGCC GTGCCGGCCAGCAAC RALTA_A1799 1899990 - 1898962 - | putative ABC transporteur, membrane component RALTA_A1800 1900790 - 1900050 - | putative ABC transporter, ATP-binding component RALTA_A1801 1901637 - 1900783 - | putative ABC transporter, ATP-binding component RALTA_A1802 1902824 - 1901637 - | putative ABC transporter, periplasmic compoent RALTA_A1803 1903592 - 1902933 - | putative transcriptional regulator, TetR family TERM 1489 1903605 - 1903617 + H 70 -10.5 -3.66784 | CATCTTGTCTCCGGT GGCGC TGC GCGCC TTGTCTTGGAAATGC RALTA_A1804 1903833 - 1904708 + | putative Alpha/beta hydrolase crcB 1905070 - 1904690 - | molybdopterin cofactor biosynthesis moaE 1905555 - 1905070 - | molybdopterin synthase, large subunit TERM 1490 1905162 - 1905173 + g 79 -7.2 -4.39877 | CATCGACCCAGCGCG CGCC CTCC GGCG TTTCTTCCTTCTTCC moaD 1905814 - 1905557 - | molybdenum cofactor biosynthesis protein D TERM 1491 1905595 - 1905584 - G 82 -3.6 -5.0133 | CACGGGGGGAAAAAA CGCG ACTT CGCA GCCATCCGCCAGCGC moeA2 1907052 - 1905847 - | molybdopterin biosynthesis protein TERM 1492 1907170 - 1907120 - R 100 -23.3 -4.72272 | gap 1 TTGGCCCACGAAAAA CGGCCCGCGCATTGCCCGCGCCCG CGCG CGGG-GCTGGCAATCCGGGGGCCG GAGATCGGGCCCGCA thrC 1908702 - 1907257 - | THREONINE SYNTHASE hom 1910034 - 1908724 - | HOMOSERINE DEHYDROGENASE TERM 1493 1909921 - 1909949 + g 76 -8 -4.29227 | overlap 1909922 GGCCACCACGGCAAT CTCGATGCCGCG GCCGG CGCGGCGACGAA TTTCTTCCTGATTGC RALTA_A1811 1911318 - 1910083 - | putative aminotransferase TERM 1494 1911136 - 1911119 - G 81 -12.7 -3.8917 | opp_overlap 1911119 TTCGAATCAGAATAA CCTGCCG AATT CGGCAGG TTTCGCATCATGTCC TERM 1495 1911119 - 1911136 + g 74 -12.7 -3.63068 | opp_overlap 1911119 TTCGAATCAGAATAA CCTGCCG AATT CGGCAGG TTTCGCATCATGTCC RALTA_A1812 1911634 - 1912017 + | hypothetical protein RALTA_A1813 1912160 - 1912624 + | Putative peroxiredoxin TERM 1496 1912832 - 1912876 + F 85 -14.3 -3.55071 | opp_overlap 1912837 1912839, overlap 1912839 CATGTCGGCAGTCCG CCAAAGAGCCGCCAACCCTGT TCC GCAGGCATGGCGGCTTTTTTG TTTGCAGCCGTGTCC TERM 1497 1912871 - 1912837 - f 70 -9.9 -3.54424 | opp_overlap 1912832 1912839, overlap 1912839 CGGCAGTCCGCCAAA GAGCCGCCAACCCTG TTCCG CAGGCATGGCGGCTT TTTTGTTTGCAGCCG TERM 1498 1912869 - 1912839 - f 74 -12.5 -3.35046 | opp_overlap 1912832 1912839, overlap 1912837 GCAGTCCGCCAAAGA GCCGCCAACCCTG TTCCG CAGGCATGGCGGC TTTTTTGTTTGCAGC TERM 1499 1912839 - 1912869 + F 100 -13.2 -5.63517 | opp_overlap 1912839 1912837, overlap 1912832 GCAGTCCGCCAAAGA GCCGCCAACCCTGT TCC GCAGGCATGGCGGC TTTTTTGTTTGCAGC TERM 1500 1912983 - 1912966 - f 75 -14.1 -3.01712 | GCGCCGTCCCGAACA CGCCGGC GTCA GCCGGCG TCTCGCGGCACCACG RALTA_A1814 1913048 - 1914751 + | hypothetical protein TERM 1501 1914760 - 1914802 + F 100 -32.9 -3.40403 | gap 1 GCTCTGACGCGGACA GCGGGCCCGGGCACCCTTCC ATGC GGAAGGG-GCCCGGGCCCGC TTGTCGTGAGCGGCA RALTA_A1815 1914881 - 1915288 + | Conserved hypothetical protein; putative exported protein TERM 1502 1915328 - 1915298 - f 86 -17.7 -2.72344 | gap 1 TGGTAGCGCCAAGGA TTCCGGTGCGCCGG CAGG CCGGCG-ACCGGAA TCCAGCGATGCCATT TERM 1503 1915917 - 1915869 - g 87 -18.1 -3.28712 | gap 1 GGCCTCGCGCTACAA CGGCGCGCGGCGGGTGGTGGAC GGCGCG GTCAACCTGCCGCCG-GCGCCG GCGACACCGGTCCCC RALTA_A1816 1915336 - 1916016 + | conserved hypothetical protein, NlpC/P60 domain TERM 1504 1916044 - 1916062 + T 100 -14.6 -4.68593 | opp_overlap 1916044 CGGGCAAACAAAAAA GCCAGGCA CTT TGCCTGGC TTTTTGCATGATCAC TERM 1505 1916062 - 1916044 - T 100 -14.6 -5.63517 | opp_overlap 1916044 CGGGCAAACAAAAAA GCCAGGCA CTT TGCCTGGC TTTTTGCATGATCAC pit 1917096 - 1916089 - | probable LOW-AFFINITY PHOSPHATE TRANSPORTER TERM 1506 1916947 - 1916917 - G 70 -12.6 -3.36749 | CAGGTGGAACACGAA GATCGCGACGACGT TGC ACATCGCCGCCATC GCCACCGCATGGTGC TERM 1507 1917106 - 1917116 + r 73 -8.2 -4.07885 | overlap 1917113 CTGCATGCCGATTGC CGCC TCA GGCG TTTTCCAGGACGATG RALTA_A1818 1917736 - 1917110 - | hypothetical protein dnaB 1919318 - 1917927 - | replicative DNA helicase TERM 1508 1918735 - 1918720 - G 72 -6.8 -4.38712 | gap 1, opp_overlap 1918729 TCCAGGTCGATAAAA CCGGTCG GCA CG-CCGG TGACATCGGTGGTGG TERM 1509 1919439 - 1919418 - R 100 -15.9 -5.4505 | opp_overlap 1919418 CCGGGCAACAAAAAA GGCAGGAGC CAGG GCTCCTGCC TTTTACAATGCCTGC TERM 1510 1919418 - 1919439 + r 100 -15.9 -4.14739 | opp_overlap 1919418 CCGGGCAACAAAAAA GGCAGGAGC CAGG GCTCCTGCC TTTTACAATGCCTGC rplI 1919951 - 1919499 - | 50S ribosomal protein L9 rpsR 1920261 - 1919983 - | 30S ribosomal protein S18 RALTA_A1822 1920564 - 1920265 - | hypothetical protein rpsF 1921028 - 1920654 - | 30S ribosomal subunit protein S6 ansB2 1922227 - 1921148 - | Asparaginase TERM 1511 1921826 - 1921839 + g 73 -8.1 -4.16284 | CGGTTGGGTCAGATG CAGCG CCAT CGCTG TTTCTTCCAGCGTAT lexA 1922396 - 1923049 + | transcriptional LExA repressor RALTA_A1826 1923163 - 1923333 + | hypothetical protein RALTA_A1827 1923753 - 1923376 - | putative lipoprotein TERM 1512 1923796 - 1923776 - H 79 -8.2 -4.27316 | opp_overlap 1923776 CCGGGGAATGCAAAA CGGCGCCC TTGGG AGGCACCG TTCTGGAGAATGCTT RALTA_A1829 1924129 - 1925238 + | putative acyltransferase TERM 1513 1925481 - 1925463 - g 100 -11.7 -4.81551 | opp_overlap 1925463 CACTGACAGCAAAAA GCCCACC GCTAG GGTGGGC TTTCGGGGGAAGATC RALTA_A1830 1925284 - 1925532 + | hypothetical protein RALTA_A1831 1926009 - 1925731 - | hypothetical protein TERM 1514 1926212 - 1926246 + H 93 -9.1 -4.72272 | overlap 1926214 CCCCCCTCGACCTTC CCGTCAGGCGGCCCG CCCCA TGGGCCGCCTGCCTC TTTTTGCTCCCCGCC TERM 1515 1926214 - 1926244 + H 100 -16.1 -3.98256 | overlap 1926212 CCCCTCGACCTTCCC GTCAGGCGGCCCG CCCCA TGGGCCGCCTGCC TCTTTTTGCTCCCCG RALTA_A1832 1926271 - 1926510 + | hypothetical protein TERM 1516 1926642 - 1926624 - T 100 -14.6 -5.48825 | opp_overlap 1926624 1926619 GAGCACGCAAAAAAA GAGTCCGC AGC GCGGACTC TTAAATTTAGCGATC TERM 1517 1926624 - 1926642 + T 82 -14.6 -3.28001 | opp_overlap 1926624, overlap 1926619 GAGCACGCAAAAAAA GAGTCCGC AGC GCGGACTC TTAAATTTAGCGATC TERM 1518 1926775 - 1926760 - T 100 -11.8 -5.75342 | TGCGCCGAAAAAAAA GCCCGC CGGA GCGGGC CAATAATCAGTTGAA TERM 1519 1926894 - 1926930 + T 93 -19.6 -3.08867 | GGGCGATCCGGCATC T-CATGTGCGGCGCGCGG AAC CCGCGCGCCGC-CATGCA TATATTCACGATTCG dusA 1927999 - 1926986 - | tRNA-dihydrouridine synthase A TERM 1520 1927045 - 1927085 + g 71 -11.8 -3.64703 | gap 1, opp_overlap 1927045 GCGCCTCTTCGAACA GCGCATCCACGTCGGCACG CGTG CGCGCCG-CATGCATGCGC TTTGCATCGGACAGC TERM 1521 1927085 - 1927045 - G 78 -16.2 -3.01712 | gap 1, opp_overlap 1927045 GCGCCTCTTCGAACA GCGCATCCACGTCGGCACG CGTG CGCGCCG-CATGCATGCGC TTTGCATCGGACAGC RALTA_A1834 1928730 - 1928170 - | putative NADPH-dependent FMN reductase; flavoprotein RALTA_A1835 1929947 - 1928859 - | putative Enoyl-CoA hydratase/isomerase TERM 1522 1929734 - 1929699 - G 89 -7.4 -4.8622 | gap 1, overlap 1929701 TTCCTCAACGAAAAA CTGGTCGAGCA-GCGGA TCG CCCGCGTGCGCGGCCTG GTGGAAATAGCGGAT TERM 1523 1930018 - 1930045 + r 71 -8.5 -3.85698 | gap 2, overlap 1930019 CGCAGTGAGCCGCTT GC--GGCGCATGC CGAC GCATGCGCCCTGC TTTGTCAGGCCAGCC RALTA_A1836 1931615 - 1930050 - | methyl-accepting chemotaxis protein TERM 1524 1931670 - 1931652 - H 72 -11.6 -3.3907 | opp_overlap 1931649 1931659, overlap 1931642 1931653 GGAAACTGGAATGAA GGCGGCGC GCC GCGCCGCT GCCCTGTCCAACTAC TERM 1525 1931669 - 1931653 - H 77 -15.1 -2.6296 | opp_overlap 1931649 1931659, overlap 1931652 1931642 GAAACTGGAATGAAG GCGGCGC GCC GCGCCGC TGCCCTGTCCAACTA RALTA_A1837 1931846 - 1932709 + | putative sterol desaturase TERM 1526 1932714 - 1932732 + T 100 -13.1 -4.72272 | opp_overlap 1932714, overlap 1932716 GCATGCAATAAAAAA CCGCGCC GGGCA GGCGCGG TTTTTCGTGGGCAGC TERM 1527 1932732 - 1932714 - T 100 -13.1 -5.4833 | opp_overlap 1932714 1932716 GCATGCAATAAAAAA CCGCGCC GGGCA GGCGCGG TTTTTCGTGGGCAGC typA 1934584 - 1932764 - | Translational regulator, GTP-binding protein TERM 1528 1933700 - 1933738 + g 71 -10.3 -3.68341 | gap 2 CATCGGCAGCGCGTC CTGGGCTTCCGGCGCGCAC ACG GTGCA-GCCG-ATGCCCAG TTCTTCGATGCCGTT TERM 1529 1935121 - 1935079 - g 91 -12.8 -4.66163 | gap 3 AGCCGCATGGAAAAA CGCGGCCTGATCGAGCGCCGC CGCC GCGACGC-CGACC-G-CCGCG TGGTCGACCTGTCGG RALTA_A1839 1934797 - 1935279 + | putative TRANSCRIPTION REGULATOR; MarR family TERM 1530 1936676 - 1936646 - g 72 -15.4 -2.96274 | overlap 1936641 GCGTCGACAAGCAGA TCCAGACCCAGCGC GAG GCGCTGGACCTGGC CGAGCATGCCTACGC RALTA_A1840 1935364 - 1936932 + | putative outer membrane protein TERM 1531 1937394 - 1937357 - g 71 -11.9 -3.65046 | gap 1 GCTGTACGTCAACAA CGGC-TCGCTCGCCGCCA ACG TGGCGCTGCGCGAAGCCG ACGTGGCCAAGGCGC emrA 1936977 - 1938218 + | Multidrug resistance protein A emrB 1938221 - 1939843 + | Multidrug resistance protein B TERM 1532 1939887 - 1939869 - f 84 -16 -3.08133 | opp_overlap 1939869 1939881 CAGCGATGCATGGAA TGGCCCCG GTT CGGGGCCA TTTTTTTTGCCCGTA TERM 1533 1939869 - 1939887 + F 100 -16 -5.76949 | opp_overlap 1939869, overlap 1939881 CAGCGATGCATGGAA TGGCCCCG GTT CGGGGCCA TTTTTTTTGCCCGTA RALTA_A1843 1940026 - 1940814 + | putative transcription regulator, iclR family pepE 1940836 - 1941549 + | Peptidase E RALTA_A1845 1941590 - 1942513 + | hypothetical protein RALTA_A1846 1942510 - 1943217 + | hypothetical protein TERM 1534 1943340 - 1943325 - g 73 -10.4 -3.95621 | opp_overlap 1943324 AGGAAAGTGGAGAAA GCCGCT AGCA AGCGGC ATGATGTGGCTCGGC TERM 1535 1943799 - 1943766 - g 72 -3.7 -4.62069 | gap 1 CGCGTACGTCAAAAA GACGCCGCAAGTCACC TAT GGCACCGCG-GGCGTC GGCACCTCGAACCAC RALTA_A1847 1943299 - 1944291 + | conserved hypothetical protein, UPF0065 truB 1945284 - 1944337 - | tRNA pseudouridine synthase B rbfA 1945747 - 1945376 - | Ribosome-binding factor A TERM 1536 1945796 - 1945771 - R 87 -19.1 -2.62184 | opp_overlap 1945774, overlap 1945774 GTCTGGTCGAGATGA CAACGGCAGGC CGAA GCCTGCCGTTG CTTGCGACGCCTTAC TERM 1537 1945793 - 1945774 - R 83 -15 -3.46602 | opp_overlap 1945774, overlap 1945771 TGGTCGAGATGACAA CGGCAGGC CGAA GCCTGCCG TTGCTTGCGACGCCT TERM 1538 1945774 - 1945793 + r 82 -15 -3.33815 | opp_overlap 1945771 1945774 TGGTCGAGATGACAA CGGCAGGC CGAA GCCTGCCG TTGCTTGCGACGCCT infB 1948699 - 1945808 - | Translation initiation factor IF-2 TERM 1539 1947830 - 1947872 + g 72 -6 -4.25256 | overlap 1947831 CTTGGCTTCGGTGCC GGCCGGCTTGACCGGCTTGT GCA GCGTACCGGTCTGCTCGGCC TTCTTTTCCTCGGCC TERM 1540 1947969 - 1947990 + g 74 -11.5 -3.78775 | TCGGCTTCGGCCGCC TCGCGGCGC TTGC GCGCGGCGA TTTCCTGCTCGGCGC TERM 1541 1948786 - 1948751 - R 75 -11.6 -3.5394 | opp_overlap 1948747, overlap 1948752 AAATTGTTGCGGAAA GCGCGTCCGGGCTGGC GTGG GCCGGCCCGGCCGTGT CCCTCAGTTGAACCA TERM 1542 1948785 - 1948752 - R 78 -15.1 -2.72043 | opp_overlap 1948747, overlap 1948751 AATTGTTGCGGAAAG CGCGTCCGGGCTGGC GTGG GCCGGCCCGGCCGTG TCCCTCAGTTGAACC nusA 1950265 - 1948790 - | transcription termination/antitermination L factor TERM 1543 1949987 - 1950005 + g 72 -5.9 -4.25104 | overlap 1949988 CTGCTCGATATAGTC GCCCAGC TCGAT GCTGGGG TTTTCCTCGCGGGCC RALTA_A1852 1950750 - 1950262 - | hypothetical protein TERM 1544 1950592 - 1950610 + g 82 -11 -4.12188 | GACCGTAAACACGTG GGTGAGCT GGC GGCTCACC TTTTCGCAATCCTCG TERM 1545 1950917 - 1950892 - R 100 -8.4 -6.23209 | gap 1, opp_overlap 1950892 1950914 1950915 CGAACCAAAAAAAAA TGGGCGCAATG CCCAT CATT-CGCCCA TCCTCGGACGAGGAT TERM 1546 1950914 - 1950935 + r 86 -8.7 -4.67011 | opp_overlap 1950892, overlap 1950915 AATGCCCATCATTCG CCCATCCTC GGAC GAGGATGGC TTTTTGAATAGACTT TERM 1547 1950915 - 1950934 + r 72 -12.2 -3.39483 | opp_overlap 1950892, overlap 1950914 ATGCCCATCATTCGC CCATCCTC GGAC GAGGATGG CTTTTTGAATAGACT rluB 1952894 - 1951053 - | Ribosomal large subunit pseudouridine synthase B TERM 1548 1952855 - 1952871 + g 77 -15.1 -3.13403 | overlap 1952854 CGGTGTCGGCGGATG CGCCCGC ATG GCGGGCG TCTTGCTCAACGGAA scpB 1953777 - 1952923 - | chromosome segregation and condensation protein RALTA_A1855 1953974 - 1953774 - | hypothetical protein RALTA_A1856 1955139 - 1954363 - | putative inner membrane lipoprotein TERM 1549 1955037 - 1954993 - G 77 -17.9 -2.53213 | gap 2, overlap 1954981 CAACTCGCCAAGCCA GGCGCCCCGGCTGCGCACCAG GCGCA CTGGCGC-C-GCCGTGGCGCC CCGCTGCTCGACAGC fnr 1955175 - 1955942 + | O2-sensitive transcriptional regulator of ccoNOQP operon TERM 1550 1955944 - 1955992 + T 83 -15.2 -3.19293 | gap 1, overlap 1955947 GCCGAAGCTGCTGAT CCACCGCGGCGTTGCC-GCGCCG CCTG CGGCGCCGGCAGCGCGGTGGTCC TTCCCTATTCCAGTT TERM 1551 1955947 - 1955989 + T 100 -21.3 -2.7898 | gap 1, overlap 1955944 GAAGCTGCTGATCCA CCGCGGCGTTGCC-GCGCCG CCTG CGGCGCCGGCAGCGCGGTGG TCCTTCCCTATTCCA RALTA_A1858 1956242 - 1955997 - | putative transmembrane protein RALTA_A1859 1956448 - 1956239 - | putative transmembrane lipoprotein ccoG 1957964 - 1956492 - | IRON-SULFUR 4FE-4S FERREDOXIN TRANSMEMBRANE PROTEIN TERM 1552 1957779 - 1957737 - G 78 -13.5 -3.66178 | gap 1, opp_overlap 1957724 1957742 CTCGCCAAGGTCAAA CAGCACGGCCTGGCGTCC GTTCCATT GGA-GCCAGGGCGTGCCG TAGTAGACCAGCTGG ccoP 1958931 - 1958014 - | Cytochrome C oxidase cbb3-type, di-heme subunit III ccoQ 1959098 - 1958934 - | Cytochrome C oxidase cbb3-type, membrane subunit ccoO 1959761 - 1959102 - | Cytochrome C oxidase cbb3-type, mono-heme subunit II ccoN 1961228 - 1959780 - | Cytochrome C oxidase cbb3-type, subunit I TERM 1553 1961298 - 1961288 - R 80 -5.4 -4.85599 | GTGACTTTAGAAAAA CCAT GCC ATGG GTGCGTTGATCTTTA ccoS 1961526 - 1961380 - | Cytochrome oxidase maturation protein cbb3-type ccoI 1964108 - 1961529 - | Copper-exporting ATPase TERM 1554 1962151 - 1962105 - G 77 -15.1 -3.21099 | gap 1 GTCGGCCAGCACGAA GCGCGCCAGCGGTCCGGTCTCG GCCC CGAG-CCAGACCACCGTGGCGC CTGGATGCATCGGGT TERM 1555 1962861 - 1962904 + g 78 -13.6 -3.55444 | opp_overlap 1962858, overlap 1962875 1962890 GGCCGTATTGAAGCT GCCGGCCAGCACGGTGTCGC CGGC GCAGCGCCGCACCGGCCGGC TTTCGCCGGTCAGCA TERM 1556 1963233 - 1963190 - G 70 -3.6 -4.50159 | gap 1, overlap 1963192 CCGAATCGAAATAAA CCTCGCCCACGCCGCGCACGG TGG CCA-GCGCGCTGGCGGCAAAG CCCGCGGCGACGCCG RALTA_A1867 1965338 - 1964211 - | putative ATPase, with nucleoside triP hydrolase domain TERM 1557 1965370 - 1965346 - R 100 -20.7 -4.27316 | CGCCGCAAGTGAAAA CGGCGCGCCGC AGG ACGGCGCGCCG GTACTCAGGCAACGG lpdA2 1966822 - 1965398 - | DIHYDROLIPOAMIDE DEHYDROGENASE (COMPONENT OF PYRUVATE AND 2-OXOGLUTARATE DEHYDROGENASES COMPLEXES) OXIDOREDUCTASE PROTEIN TERM 1558 1966880 - 1966922 + r 71 -13.3 -3.04144 | gap 1 ACCGTGATCACGGGA GCGCGCTCC-CCGCGCACGC CTGT GCGTGCGCGGAGGGACCGGC TGTTACAGGTCCAGC sucB 1968175 - 1966925 - | Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex TERM 1559 1967459 - 1967435 - G 78 -12.9 -3.71848 | opp_overlap 1967433 1967435 GGCCTTGACGAAGAA CGACATGAAGC CCA GCTTCACGCCG TGTTCCTTCTCGAAG sucA 1971115 - 1968263 - | 2-oxoglutarate dehydrogenase E1 component TERM 1560 1968455 - 1968437 - G 72 -13.2 -3.14564 | opp_overlap 1968440, overlap 1968440 GTAGTGCTGGACGAA GAACCAGG CGC CCTGGTTC TGCGGCTCGTCCTGG TERM 1561 1971258 - 1971240 - R 75 -11.7 -3.64703 | opp_overlap 1971238 TGGCGCTTACGCAAA CGGCACC ACCAG GGTGCCG CGTGTAATGGCCGCC ugpQ 1972191 - 1971445 - | Glycerophosphoryl diester phosphodiesterase TERM 1562 1971798 - 1971741 - G 80 -17.6 -2.92038 | overlap 1971736 CTGAAAACGAGGACA GCAGCGGCGGCACCCCGGCG-CCGGCCC ACAG GGACTGGGCGTCGAGG-GCCACCGCGGC GCCGGTGCGCGCCTC ugpC 1973302 - 1972193 - | sn-glycerol-3-phosphate transport ATP-binding protein TERM 1563 1973314 - 1973341 + r 76 -9.1 -3.97139 | gap 1, overlap 1973315 CCATTGCTGTTGTCC TGCGT-GCGCGC GGGTG GCGCGCCACGCC TTGTTGTTCCGCTTA TERM 1564 1973315 - 1973340 + r 71 -12.6 -2.9756 | gap 1, overlap 1973314 CATTGCTGTTGTCCT GCGT-GCGCGC GGGTG GCGCGCCACGC CTTGTTGTTCCGCTT ugpE 1974202 - 1973354 - | sn-glycerol-3-phosphate transport system permease protein TERM 1565 1973661 - 1973645 - G 83 -5 -4.83615 | overlap 1973646 1973647 CACGTCCCAGAAAAA GCGCAG CGGCC CGGCGC CGTCGATGCGCGCGG ugpA 1975095 - 1974214 - | sn-glycerol-3-phosphate transport system permease protein TERM 1566 1974526 - 1974494 - G 100 -17.7 -3.98214 | opp_overlap 1974505 ATGATCGACCAGAAA CGCCGCCATGGACCG GCG CCGTCGATGGCGGCG GCCTCGATCAGCGAG TERM 1567 1974862 - 1974817 - G 78 -13.2 -3.65542 | overlap 1974815 GCGATCCGCAAAATA CGCCAGCGCCAGCGCGGTGG TCAGGC CCACCACGGTGACGCCGATG GCAAAGACCGCCGTG TERM 1568 1975030 - 1975018 - G 89 -6.3 -5.1356 | overlap 1975020 GGGCAGGAAGAAAAA GATCA GCG TGATC GCGATCTGCGGCAAA TERM 1569 1975180 - 1975210 + r 70 -10.2 -3.61103 | opp_overlap 1975177 1975182, overlap 1975181 GGCCGGCCACAATGC AAGCGGGCGGAGGT TTC GCCGCCGCCCGCCC TTTCCCATCAGCTTG TERM 1570 1975181 - 1975209 + r 72 -13.7 -2.7634 | opp_overlap 1975177 1975182, overlap 1975180 GCCGGCCACAATGCA AGCGGGCGGAGGT TTC GCCGCCGCCCGCC CTTTCCCATCAGCTT TERM 1571 1975208 - 1975182 - R 86 -16.5 -3.23274 | opp_overlap 1975181 1975180, overlap 1975177 CCGGCCACAATGCAA GCGGGCGGAGG TTTCG CCGCCGCCCGC CCTTTCCCATCAGCT ugpB 1976556 - 1975240 - | Glycerol-3-phosphate-binding periplasmic protein RALTA_A1876 1976750 - 1977541 + | Putative archaeal SPP-like hydrolase family protein TERM 1572 1977561 - 1977583 + T 100 -16.2 -5.7946 | opp_overlap 1977561 GCCCGAAAGAAAAAA CCGGCCGAGG TAT CCCCGGCCGG TTTTTTTCTTGCGCG TERM 1573 1977583 - 1977561 - T 100 -18.4 -5.63517 | opp_overlap 1977561 GCCCGAAAGAAAAAA CCGGCCGAGG TAT CCCCGGCCGG TTTTTTTCTTGCGCG ntrC 1979199 - 1977613 - | Nitrogen regulation protein NR(I) ntrB 1980436 - 1979258 - | Nitrogen regulation protein NR(II) TERM 1574 1980357 - 1980308 - G 78 -16.4 -3.05596 | gap 2 GAGGCCGGCATGGAA CGCCGCCGCGCCGATGCTCAGCAC GCGC GCGCCG-GCTTCGG-GCGGCGCCG GCTCCGCCGCGGACG RALTA_A1879 1980935 - 1980441 - | conserved hypothetical protein; putative exported protein TERM 1575 1981114 - 1981095 - R 100 -9.2 -5.01811 | opp_overlap 1981095, overlap 1981089 CGAGCAAAGCAAAAA GGGACAGC CGAA GCCGCCCC CTTGTGGTGCAACTG glnA 1982586 - 1981171 - | glutamine synthetase TERM 1576 1981211 - 1981230 + g 71 -10 -3.7347 | TCGACCGGGTGCGTG GTCATGCG GAAA CGCGTGAC TTCTTCCATCTTCAG TERM 1577 1982526 - 1982542 + g 72 -5.1 -4.4078 | opp_overlap 1982526 CGGTGAAGCGGAAAT CGACG AACTTGA CGTCG TTTTCCTTCACCAGC TERM 1578 1983297 - 1983313 + G 77 -10.8 -3.86015 | opp_overlap 1983307 TGTCCTACCCGGGCG GCGCGC AGAAC GCGCGC TTTATCGAGGAACTG RALTA_A1881 1983071 - 1983535 + | conserved hypothetical protein; rhodanese-related sulfurtransferases domain TERM 1579 1983554 - 1983583 + T 83 -12.1 -4.07568 | opp_overlap 1983559, overlap 1983559 CGCCGGTAGCTGAAT GCAAAGGGGCAGC CAAG GCTGCCCCTTCTC TTTTGCCCGGCGGCA TERM 1580 1983559 - 1983578 + T 89 -15 -3.95435 | opp_overlap 1983559, overlap 1983554 GTAGCTGAATGCAAA GGGGCAGC CAAG GCTGCCCC TTCTCTTTTGCCCGG TERM 1581 1983578 - 1983559 - T 88 -15 -3.76125 | opp_overlap 1983559 1983554 GTAGCTGAATGCAAA GGGGCAGC CAAG GCTGCCCC TTCTCTTTTGCCCGG RALTA_A1882 1984427 - 1983603 - | conserved hypothetical protein; putative molybdopterin binding domain RALTA_A1883 1985327 - 1984440 - | Conserved hypothetical protein; putative TRANSMEMBRANE PROTEIN RALTA_A1884 1986481 - 1985507 - | Conserved hypothetical protein; putative transmembrane protein RALTA_A1885 1987341 - 1986481 - | putative lipoprotein, putative Polysaccharide deacetylase RALTA_A1886 1988354 - 1987368 - | hypothetical protein hrpA 1992549 - 1988497 - | ATP-dependent helicase TERM 1582 1990225 - 1990243 + g 72 -13.8 -3.14564 | opp_overlap 1990206 1990225 1990224 1990222 GCGGCGGATAAACAG CTCGCGCG CCT CGCGCGGG TTCATCGGGCCATAG argA 1992573 - 1994054 + | Amino-acid acetyltransferase (N-acetylglutamate synthase) TERM 1583 1994210 - 1994188 - g 71 -10.6 -3.68936 | CATCAAGCTGAACAA GGAAGCCGAA GGT CTCGACTTCC CGCCGCTGCCCGGCG yggX 1994153 - 1994425 + | oxidative stress-related protein, involved in Fe(2+) trafficking protein TERM 1584 1994469 - 1994449 - T 100 -16.9 -5.06414 | opp_overlap 1994449 GCCGGGCAACAAAAA TGGGGTGCC TGA GGCACCCCA TTTTGCTTGGTGGCG TERM 1585 1994449 - 1994469 + T 100 -16.9 -4.45544 | opp_overlap 1994449 GCCGGGCAACAAAAA TGGGGTGCC TGA GGCACCCCA TTTTGCTTGGTGGCG rpiA 1995195 - 1994509 - | Ribose-5-phosphate isomerase A (Phosphoriboisomerase A) (PRI) tal 1995366 - 1996322 + | transaldolase TERM 1586 1996378 - 1996341 - T 74 -11.9 -3.44146 | overlap 1996337 1996342 TCGCCGGACAACGAA GCCGCCGTCGTTCCCGC GAAG GCGGGAATGACAGTGGA AATTGACGCCTTGAC TERM 1587 1996377 - 1996342 - T 77 -15.4 -2.66274 | overlap 1996337 1996341 CGCCGGACAACGAAG CCGCCGTCGTTCCCGC GAAG GCGGGAATGACAGTGG AAATTGACGCCTTGA npdA 1997166 - 1996399 - | NAD-dependent deacetylase; sirtuin family rlmB 1997914 - 1997171 - | 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB (23S rRNA Gm2251 2'-O-methyltransferase) rnr 2000613 - 1997992 - | RNase R, 3'-5' exoribonuclease TERM 1588 2000753 - 2000792 + H 100 -18 -4.59511 | opp_overlap 2000760, overlap 2000760 TGGGCACCAGATCAC CGGAAAACCCGCAGCGCT TTCG AGCCCTGCGGGTTTTTTG TTTTTGACGCCTGTT TERM 1589 2000760 - 2000785 + H 100 -14.7 -5.93252 | opp_overlap 2000760, overlap 2000753 CAGATCACCGGAAAA CCCGCAGCGCT TTCG AGCCCTGCGGG TTTTTTGTTTTTGAC TERM 1590 2000785 - 2000760 - H 100 -14.7 -4.16279 | opp_overlap 2000760 2000753 CAGATCACCGGAAAA CCCGCAGCGCT TTCG AGCCCTGCGGG TTTTTTGTTTTTGAC RALTA_A1895 2001090 - 2001524 + | putative transcriptional regulator, HTH rrf2-type DNA-binding domain TERM 1591 2001506 - 2001524 + F 100 -5.9 -5.61596 | overlap 2001507 TGTCGAGCGGGGCAG CCAGCGC CGCAA GCGCTGA TTTTTTTATCCCGAT TERM 1592 2001507 - 2001523 + F 74 -9.4 -3.95873 | overlap 2001506 GTCGAGCGGGGCAGC CAGCGC CGCAA GCGCTG ATTTTTTTATCCCGA TERM 1593 2001684 - 2001645 - g 72 -14.2 -3.18264 | gap 1, opp_overlap 2001681 CGCCTGACCGACGAA GCCGTGCG-CCGCGGCCAC CAG GTGACCGCCATCGCGCGGC AGGCCAGCCGTTTGC TERM 1594 2002179 - 2002160 - g 73 -12.8 -3.48807 | overlap 2002153 CGATGAAATCGAGAA GCCGGCGC ATTC GCGCCAGC GCTTCACGGTGGGCT RALTA_A1896 2001588 - 2002199 + | Putative oxidoreductase RALTA_A1897 2002784 - 2002215 - | putative Xanthine phosphoribosyltransferase TERM 1595 2002857 - 2002896 + r 74 -14.2 -2.62263 | gap 1 GGGCCGATGGACTAT CTGGCA-GGCCGCGGCGCT CGT GGCGCGGCGGCCCTGCGGG TGCTGTGCAGGCGCT purA 2004251 - 2002911 - | adenylosuccinate synthetase TERM 1596 2003867 - 2003883 + g 79 -15.1 -3.35679 | TCTTGGCGGCGCCGC GGCGCGC TTC GCGCGCC TTGTCGATGGCGACG hisZ 2005488 - 2004337 - | hetero-octameric ATP phosphoribosyl transferase, tRNA synthetase-like subunit TERM 1597 2004583 - 2004572 - G 81 -7.2 -4.66163 | opp_overlap 2004582, overlap 2004573 2004574 AGGTCCAGCGAAAAA CCCG TTGC CGGG CGGGCCCGGCCAAAC TERM 1598 2005594 - 2005562 - R 82 -11.1 -4.07568 | overlap 2005565 CCGGGCCCGGCAAAA CCAGGGTGCGGGCGC CGC GCGCCCGCGCCATCA CTCCGCCGCGACGGC TERM 1599 2005591 - 2005565 - R 78 -15 -3.08032 | overlap 2005562 GGCCCGGCAAAACCA GGGTGCGGGCGC CGC GCGCCCGCGCCA TCACTCCGCCGCGAC TERM 1600 2005625 - 2005640 + r 78 -11.8 -3.794 | opp_overlap 2005625, overlap 2005620 TCCAGCCGGACAAAA CCCCGG CAAG CCGGGG TTTCGTCAATTCGCC TERM 1601 2005640 - 2005625 - R 91 -11.8 -4.38712 | opp_overlap 2005625 2005620 TCCAGCCGGACAAAA CCCCGG CAAG CCGGGG TTTCGTCAATTCGCC hflC 2006583 - 2005675 - | Protein hflC, cofactor of ATP-dependent protease FtsH hflK 2007958 - 2006594 - | Protein hflK, cofactor of ATP-dependent protease FtsH TERM 1602 2009224 - 2009211 - R 71 -9.5 -3.7282 | overlap 2009212 CGAGCCGATGAACAA GGCCG GGTC CGGCC GCGAGCGGCGGCCCG hfq 2009855 - 2009616 - | RNA chaperone Protein hfq, post-transcriptional regulator TERM 1603 2010057 - 2010037 - R 72 -4.5 -4.5852 | opp_overlap 2010054, overlap 2010038 2010039 GAACGCAAACGAAAA CTGGCCCCG CCA CGGATCCGG TTCCGGACTCAATCC TERM 1604 2010079 - 2010090 + r 87 -5.8 -5.1356 | overlap 2010054 ACTCAATCCTTCGAG TCCG CGTA CGGA TTTTTGTTCGTGCGA engA 2011409 - 2010066 - | Ribosome-Associated GTP-binding protein protein TERM 1605 2011449 - 2011424 - R 100 -17.5 -3.89215 | overlap 2011418 TGCCATAAACGGAAA CGGGGGCCGGC AACT GCCGCCCCCCG GTAACTCCGGAGTCA TERM 1606 2011515 - 2011466 - R 90 -17.8 -3.06133 | gap 1, opp_overlap 2011474 2011475 TAACTCCGGAGTCAA GGGTTCCAACGGCAGCCCGCGCC ACCTG GGCGCGGGCTGCCGCTTGT-CCT GTCGGGCGCGGTGCG TERM 1607 2011474 - 2011508 + r 100 -24.3 -3.46602 | opp_overlap 2011466, overlap 2011475 GAGTCAAGGGTTCCA ACGGCAGCCCGCGCC ACCTG GGCGCGGGCTGCCGC TTGTCCTGTCGGGCG TERM 1608 2011475 - 2011507 + r 100 -27.8 -2.67747 | opp_overlap 2011466, overlap 2011474 AGTCAAGGGTTCCAA CGGCAGCCCGCGCC ACCTG GGCGCGGGCTGCCG CTTGTCCTGTCGGGC RALTA_A1906 2012802 - 2011627 - | conserved hypothetical protein, WD40-like repeat, quinoprotein alcohol dehydrogenase domain RALTA_A1907 2013501 - 2012869 - | conserved hypothetical protein yfgM TERM 1609 2013179 - 2013227 + g 73 -15.8 -2.62983 | opp_overlap 2013207 AGCTGGCTCTTGGCC GCGCTCAGGTCGCCCGCATCGT ACAGC ACGCGGCTGGCGACCAGTGCGC TCATCTGGCCGTAGG hisS 2014929 - 2013559 - | Histidyl-tRNA synthetase (Histidine--tRNA ligase) (HisRS) ispG 2016260 - 2014968 - | 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase RALTA_A1910 2017294 - 2016308 - | putative transcriptional regulator yfgA; cro/C1-type DNA-binding domain. RALTA_A1911 2018066 - 2017287 - | putative Type IV pilus biogenesis protein PilF; TPR repeat domain RALTA_A1912 2019217 - 2018063 - | Conserved hypothetical protein; radical SAM enzyme, Cfr family domain; putative iron binding enzyme TERM 1610 2018445 - 2018433 - G 72 -9.1 -4.04394 | overlap 2018429 TCGAAAGTAATGAAA TCGCG CGG CGCGA ATTCCAGGTAGCGAC ndk 2019680 - 2019255 - | Nucleoside diphosphate kinase (NDK) (NDP kinase) TERM 1611 2020329 - 2020302 - g 73 -10.6 -3.84271 | gap 1, opp_overlap 2020299 CGAGAAGACCAAGAA CAGCAGCATGGGC GTG GTCC-TGCTGCTG GCCTTTACCTTCTTT RALTA_A1914 2020054 - 2020758 + | hypothetical protein TERM 1612 2020784 - 2020800 + T 100 -15.1 -5.07652 | opp_overlap 2020784 CGCAGCATGACGAAA GCCGGCC AAT GGCCGGC TTTTCTTTTGGGCAC TERM 1613 2020800 - 2020784 - T 90 -15.1 -3.80573 | opp_overlap 2020784 CGCAGCATGACGAAA GCCGGCC AAT GGCCGGC TTTTCTTTTGGGCAC rumA 2022289 - 2020826 - | 23S rRNA (Uracil-5-)-methyltransferase rumA (23S rRNA(M-5-U1939)-methyltransferase) RALTA_A1916 2022367 - 2023221 + | conserved hypothetical protein; Endonuclease/Exonuclease/phosphatase family RALTA_A1917 2024097 - 2023258 - | conserved hypothetical protein; Polynucleotidyl transferase, Ribonuclease H-like domain rpoS 2025281 - 2024094 - | RNA polymerase sigma factor rpoS RALTA_A1919 2026160 - 2025288 - | Putative outer membrane metallopeptidase lipoprotein nlpD; LysM Peptidoglycan-binding domain pcm1 2027089 - 2026169 - | Protein-L-isoaspartate O-methyltransferase TERM 1614 2026217 - 2026204 - G 81 -3.1 -4.99645 | gap 1 AGGGCACAAAGAAAA CG-GCT TCA AGCGCG GTTCGGTGAAAGCGA TERM 1615 2026439 - 2026403 - G 70 -12.3 -3.30441 | gap 2 GATGATGGCCGAGAA CGGCG-CGGCCTGC-GG CAGGC CCAGCATGCCGTCGCCG TAGTGCAGGCGCAGA TERM 1616 2026831 - 2026774 - G 85 -21.2 -2.62616 | gap 2, opp_overlap 2026829 CGATGGCCGACAGCA CGCGCTCGTCGCGGATGCCGGCGGCGCG CAGC CGCGCCGCCAGTG-CCGCG-CGGGCACG CGCCGAGGCCATGCC surE 2027885 - 2027133 - | 5'-nucleotidase surE (Nucleoside 5'-monophosphate phosphohydrolase) TERM 1617 2027930 - 2027908 - H 75 -14.8 -2.79796 | TTGTACCTGAGCACA GGCGCGCAAG CGG CCCGCGCGCC GCCCGATGCGGCCCG RALTA_A1922 2028105 - 2029079 + | putative OXIDOREDUCTASE PROTEIN; zinc-containing alcohol dehydrogenase family, Quinone oxidoreductase subfamily TERM 1618 2029167 - 2029130 - T 100 -11.2 -5.40474 | overlap 2029133 ACCGGCCCAAAAAAA GTACGGCGCAGGCAGT GCGGCT ACACCCTGCGCCGTGC GAGGCAACCCGCCTC TERM 1619 2029164 - 2029133 - T 71 -11.5 -3.49966 | overlap 2029130 GGCCCAAAAAAAGTA CGGCGCAGGCAGT GCGGCT ACACCCTGCGCCG TGCGAGGCAACCCGC TERM 1620 2029259 - 2029243 - T 70 -7.9 -4.07687 | opp_overlap 2029249 2029254, overlap 2029229 2029246 AGGCGGTTCCCAAAA CAGCCAG CCC CCGGCCG GGCCGTTTTCCGGAA TERM 1621 2029254 - 2029264 + T 73 -8.2 -4.08945 | opp_overlap 2029243 2029246, overlap 2029249 AAAACAGCCAGCCCC CGGC CGG GCCG TTTTCCGGAAATCCT RALTA_A1923 2030349 - 2029285 - | putative outer membrane porin protein RALTA_A1924 2030583 - 2031257 + | Putative response regulator, CheY family TERM 1622 2032463 - 2032495 + G 76 -13.3 -3.48276 | opp_overlap 2032450 2032451 AACGGCCCCGGTATT GCGCCGGATGAACGC GAG GCGGTGTTCCGGCGC TTCTATCGCGGCGCC RALTA_A1925 2031254 - 2032672 + | putative sensor histidine kinase RALTA_A1926 2033525 - 2032734 - | putative ABC-type transport system, permease component TERM 1623 2033442 - 2033418 - G 89 -4.1 -5.27335 | CTCGCCAAAGAAAAA CGCGACCTGCT GCG AGCGCGTGGCG GCGTGCCACACGCCG RALTA_A1927 2034377 - 2033565 - | putative ABC-type transport system, ATP-binding component TERM 1624 2034485 - 2034464 - R 100 -17.3 -4.05788 | CTGCCGCAAAGCAAA GGCCCGCTG CGGG CAGCGGGCC GATGGCGTCGACGGC RALTA_A1928 2035551 - 2034508 - | putative ABC transporter, periplasmic_binding component TERM 1625 2034624 - 2034663 + g 76 -14.2 -3.40141 | gap 1, opp_overlap 2034598 CGTTGAGCGCGGTGC GCGGGC-CGTCGGCCGGCA TGG TGCCGTCCGGCGAGATCGC TTCCTTGACCTTTTC TERM 1626 2035331 - 2035302 - G 70 -14.9 -2.70932 | CGCTGCCGCCAACCA CCGCCTGCAGCGC CTTG GCGCCGCCGGCGA AGTCGACGATCTCGA RALTA_A1929 2036746 - 2035730 - | conserved hypothetical protein, UPF0065 RALTA_A1930 2037769 - 2036798 - | hydroxymethylglutaryl-CoA lyase TERM 1627 2037045 - 2037075 + g 73 -12.5 -3.53012 | gap 1 CATCCGCCCAGACCG CCGGCG-GCCGCGT CGAA GCGCGTCACGCCGG TTTGCCAGGCGGCCA TERM 1628 2037085 - 2037119 + g 70 -12 -3.31461 | overlap 2037088 CGCCGGTTTGCCAGG CGGCCACGGCATTGGC CAG GCCCATGCCGCGGGTG TTGTGCAGGTGGATG RALTA_A1931 2038962 - 2037766 - | putative caiB/baiF CoA-transferase family protein TERM 1629 2039117 - 2039089 - R 74 -13.1 -3.36492 | overlap 2039113 TCGGCAATCGGAGAA GCGGGCTTTCTCG GAA CGCGAAAGGCCGC GTCGAGCTTCCGCAT RALTA_A1932 2040045 - 2039140 - | putative transcriptional regulator, LysR family recR 2040731 - 2040117 - | Recombination protein recR RALTA_A1934 2041071 - 2040739 - | hypothetical protein TERM 1630 2041149 - 2041124 - R 75 -13.9 -3.05294 | GGAAATTCGGTAACA CCAGGCGCCGC TCAG GCGGCGCGCGG CTGGATCGAGCCTGG dnaX 2043444 - 2041135 - | DNA POLYMERASE III (SUBUNITS TAU AND GAMMA) TERM 1631 2041318 - 2041369 + g 87 -17.5 -3.28712 | gap 3, opp_overlap 2041311 GCAGACCACGCGCAC CGGC-TCGCCGAAGTGGTCGCA-CAG CGC CTGCTGCAACCGCT-CGGCGACGCCG TTCTCGCCCAGCGCC RALTA_A1936 2046051 - 2043565 - | Putative ribonucleotide reductase alpha subunit TERM 1632 2045839 - 2045851 + g 72 -6.2 -4.25104 | ATTGATGCGCCCGGC CGGC ACGAA GCCG TTTTCCTGGGCCCAC RALTA_A1937 2050149 - 2046508 - | Putative helicase, uvrD subfamily RALTA_A1938 2053019 - 2050146 - | Putative helicase, C_term RecB family exonuclease TERM 1633 2051653 - 2051635 - G 73 -13.1 -3.53444 | GGATGCTGGGCGAAA CCGCGCG GCCAG CGCGCGG CCTCGTCGGCGAGCA TERM 1634 2053144 - 2053096 - R 88 -14.4 -3.75598 | gap 1, opp_overlap 2053125 GAAGCAAGGCAACAA TGGCGCGGCGCCGCCAGCCGGCG CGTC CGGCGGCGGG-GGCACCGCGGTA CGGGAACAGCCCCGC RALTA_A1939 2053436 - 2053164 - | hypothetical protein TERM 1635 2054111 - 2054098 - g 72 -5.9 -4.2679 | overlap 2054101 2054106 CAATGTCGATGAAAA CCAGC AAGT GCCGG CCAAGTTCGGCATCC trxA 2053907 - 2054233 + | thioredoxin 1 TERM 1636 2054242 - 2054265 + F 76 -11 -3.73775 | CCTGTAAGCTGCGCG CCGGGACC CGACCCAC GGTCCCGG TTTCGTCACGATCCG rho 2054413 - 2055675 + | transcription termination factor Rho TERM 1637 2055711 - 2055728 + F 100 -12.7 -5.93252 | opp_overlap 2055703 2055710 2055711 CAACGCAGACACAAG GGCGTGC CGCG GCACGCC TTTTTTGTTTTTCGA RALTA_A1942 2055751 - 2056602 + | conserved hypothetical protein, DUF980 COG3228 rpmE 2056801 - 2057061 + | 50S ribosomal protein L31, type B subfamily TERM 1638 2057122 - 2057151 + F 100 -16.5 -4.36914 | opp_overlap 2057122 2057127 2057129 GGCACGCGCGAACCA GCACAGAGGCAGC ATCG GCTGCCTCTTTGC TTTTGTGCCGGAGCG TERM 1639 2057151 - 2057122 - f 81 -16.5 -2.71731 | opp_overlap 2057122, overlap 2057127 2057129 GGCACGCGCGAACCA GCACAGAGGCAGC ATCG GCTGCCTCTTTGC TTTTGTGCCGGAGCG TERM 1640 2057146 - 2057127 - f 74 -13.6 -2.86164 | opp_overlap 2057122, overlap 2057122 2057129 GCGCGAACCAGCACA GAGGCAGC ATCG GCTGCCTC TTTGCTTTTGTGCCG TERM 1641 2057605 - 2057627 + G 77 -11.2 -3.9461 | TGGGCGCGACCGACG CGGCGCGGCT GGC AACCGCGCTG TTCTTCTTCGCGACC TERM 1642 2058056 - 2058080 + G 70 -12.1 -3.34398 | overlap 2058055 2058057 GCTGGGCCTGCTGGT CGTGGCCGC ATGGCTG GCGGCCGCG TATTTCGGCGCGGCC RALTA_A1944 2057304 - 2059091 + | Conserved hypothetical protein, putative membrane protein; putative glycosyltransferases, PMT family RALTA_A1945 2059236 - 2060588 + | multidrug efflux system transporter TERM 1643 2060649 - 2060664 + T 86 -11.8 -4.14392 | opp_overlap 2060649 CGTACAAAAGAAAAA GCCCGC TTGC GCGGGC TTTTCAAAATTGGCG TERM 1644 2060664 - 2060649 - T 100 -11.8 -5.54907 | opp_overlap 2060649 CGTACAAAAGAAAAA GCCCGC TTGC GCGGGC TTTTCAAAATTGGCG TERM 1645 2061240 - 2061265 + T 100 -19.1 -4.19735 | opp_overlap 2061240 CACCCAAAAGAAAAA CCCGCATGGTG CAAA CACCATGCGGG TTTAGTTTTGGCGGA TERM 1646 2061265 - 2061240 - T 100 -19.1 -5.48213 | opp_overlap 2061240 CACCCAAAAGAAAAA CCCGCATGGTG CAAA CACCATGCGGG TTTAGTTTTGGCGGA TERM 1647 2061864 - 2061895 + T 100 -11.4 -5.19916 | overlap 2061887 CGAGATTATGCGCAA GTCCCCGCCGAAGC GCAA GCCCCGGCGCGGAC TTTTTTGCGTCTTTT TERM 1648 2061887 - 2061906 + T 72 -4.2 -4.56597 | overlap 2061864 CGAAGCGCAAGCCCC GGCGCGGA CTTT TTTGCGTC TTTTTGGGAGGCGCC gltX 2063367 - 2061967 - | glutamate tRNA synthetase TERM 1649 2063389 - 2063412 + H 78 -15.2 -2.72799 | opp_overlap 2063389, overlap 2063386 GGGAAAAACAAGAAA GCCCGCGCGC GGCG GCGCGCAGGC TGGTGTATGTGCGGG TERM 1650 2063412 - 2063389 - H 100 -17.4 -4.76802 | opp_overlap 2063389 2063386 GGGAAAAACAAGAAA GCCCGCGCGC GGCG GCGCGCAGGC TGGTGTATGTGCGGG RALTA_A1947 2063634 - 2064554 + | putative lipoprotein, putative esterase of the alpha-beta hydrolase superfamily, Patatin-like phospholipase domain TERM 1651 2064570 - 2064587 + TF 100 -11.3 -5.14563 | opp_overlap 2064570 CGCCCAAGCAAAAAA GGACTGC CGTG GCAGTCC TTTTTTGCTGGAAGC TERM 1652 2064587 - 2064570 - Tf 100 -11.3 -5.26875 | opp_overlap 2064570 CGCCCAAGCAAAAAA GGACTGC CGTG GCAGTCC TTTTTTGCTGGAAGC RALTA_A1948 2065294 - 2064614 - | conserved hypothetical protein, NlpC/P60 domain (cell wall peptidase/lipoprotein); putative transmembrane protein TERM 1653 2065345 - 2065324 - gR 74 -12.3 -3.51411 | gap 1, opp_overlap 2065316, overlap 2065320 ATCGTTCCAAAGCAA GCCCCGGCAC AAA GT-CCGGGGC AGCTGGGTATTGAGC RALTA_A1949 2065294 - 2065518 + | hypothetical protein RALTA_A1950 2067365 - 2065704 - | putative ABC-type transport system, ATP binding component RALTA_A1951 2068498 - 2067362 - | Putative ABC-type transport system, permease component; OppBC subfamily RALTA_A1952 2069544 - 2068495 - | Putative ABC-type transport system, permease component; OppBC subfamily TERM 1654 2069215 - 2069167 - G 76 -3 -4.7373 | gap 1, overlap 2069168 2069176 GTAGGTCAGGAAAAA GGTCCACAAGCCCAGGCTGACCG ATAC CGG-CAGCTTGGACTTGACCAAC TCCCACACGCTGCGG RALTA_A1953 2071497 - 2069596 - | putative ABC-type transport system, periplasmic component TERM 1655 2071059 - 2071046 - G 75 -4.5 -4.62069 | gap 1, overlap 2071047 2071048 TCGCCATTGGAAAAA CGCGCC TGC GG-GCG GATCGTGAAGGTGAC TERM 1656 2071393 - 2071378 - G 70 -3.2 -4.46212 | gap 1, overlap 2071380 TGCCGGATCAGAAAA GAGCGAG ACC CCCGC-C ACCAGCGTCAGCGCC TERM 1657 2071643 - 2071627 - H 83 -7.9 -4.63218 | overlap 2071629 2071640 CGCGGCGCAATAAAA GGGCCGC AGG ACAGCCC GGCACCCGCACCGCC fabI1 2071707 - 2072495 + | enoyl-[acyl-carrier-protein] reductase (NADH) TERM 1658 2072549 - 2072527 - T 100 -10.5 -5.24129 | opp_overlap 2072528, overlap 2072528 GCGCGTGATAAAAAA GGGGGTGCC GTTAT GGCACCCCT TTTTGCTTCGGGATT TERM 1659 2072528 - 2072548 + T 100 -14.7 -4.86621 | opp_overlap 2072527 2072528 CGCGTGATAAAAAAG GGGGTGCCG TTA TGGCACCCC TTTTTGCTTCGGGAT TERM 1660 2072548 - 2072528 - T 84 -14 -3.73995 | opp_overlap 2072528, overlap 2072527 CGCGTGATAAAAAAG GGGGTGCC GTTAT GGCACCCC TTTTTGCTTCGGGAT RALTA_A1955 2073840 - 2072596 - | putative permease of the major facilitator superfamily RALTA_A1956 2074452 - 2074003 - | putative membrane lipoprotein RALTA_A1957 2075512 - 2074463 - | Conserved hypothetical protein, putative membrane protein RALTA_A1958 2076641 - 2075502 - | Putative Multidrug resistance efflux pump TERM 1661 2076015 - 2076042 + g 71 -9.8 -3.71998 | gap 1, overlap 2076012 TTCGGCTTTTTCCAG CGCCGAGGCGGCG CTG CGCAGC-TTGGCG TTGTCTTCGTCGCTG RALTA_A1959 2078193 - 2076652 - | Putative Outer membrane efflux protein (OEP) TERM 1662 2076962 - 2076921 - G 73 -13 -3.53091 | gap 2, opp_overlap 2076953 2076958 AGCCCTCGCGGTAAA GCGCGTTGGCCAGGGTCAGC GAAC GCTG-CGC-GGCCAGCGCGC TGTCGCGCAGGATCT RALTA_A1960 2079314 - 2078211 - | conserved hypothetical protein, UPF0118; putative membrane protein TERM 1663 2078518 - 2078498 - G 72 -14.1 -3.15257 | overlap 2078496 2078492 TGGCAAATACATAGA TGATCACCG GCA CGGTGATCA GCGTGGCCGGCAGCT RALTA_A1961 2081008 - 2079746 - | Putative di-guanylate cyclase, GGDEF domain; transmembrane protein TERM 1664 2080701 - 2080664 - G 86 -13.3 -3.85698 | gap 1, overlap 2080665 GGCGTTGGCCAGAAA TCGCGGCGCCAGGTCGCC CCA GGCCACC-GCCGCCGCGG CGGCGAGGTTCAGCG TERM 1665 2080700 - 2080665 - G 75 -16.8 -2.91276 | gap 1, overlap 2080664 GCGTTGGCCAGAAAT CGCGGCGCCAGGTCGCC CCA GGCCACC-GCCGCCGCG GCGGCGAGGTTCAGC TERM 1666 2081333 - 2081311 - R 72 -7.6 -4.23794 | overlap 2081312 2081326 2081327 CCAAGTCAAGACAAA GCGCCCCC GCCAGAA GGGGGAGC AGCGCGGCGGGCCCG TERM 1667 2081537 - 2081512 - R 100 -19.1 -4.02707 | opp_overlap 2081512 GAAATACCCAAACAA CGGCCTGGATC GCAA GATCCAGGCCG TTTTTCTTTGGGTTC TERM 1668 2081512 - 2081537 + r 100 -19.1 -5.33026 | opp_overlap 2081512 GAAATACCCAAACAA CGGCCTGGATC GCAA GATCCAGGCCG TTTTTCTTTGGGTTC RALTA_A1962 2082367 - 2081621 - | putative membrane linked exonuclease TERM 1669 2081683 - 2081665 - G 76 -3 -4.72272 | overlap 2081669 CCGCGCCAGCAAAAA GCATCAGT ATC ACCGCCGC CATCACCAACCCCCT RALTA_A1963 2082998 - 2082477 - | hypothetical protein infA2 2083594 - 2083815 + | translation initiation factor IF-1 TERM 1670 2083820 - 2083863 + F 72 -12.3 -3.34398 | opp_overlap 2083844, overlap 2083818 2083821 ACAAGTCCTGAGTTT CCCCACGGCGCCGATGGCA ACGCAC TGCCATCGGCGCCGCCGCA TGTTTCGCGCCGACG TERM 1671 2083821 - 2083862 + F 77 -15.8 -2.60496 | opp_overlap 2083844, overlap 2083820 2083818 CAAGTCCTGAGTTTC CCCACGGCGCCGATGGCA ACGCAC TGCCATCGGCGCCGCCGC ATGTTTCGCGCCGAC TERM 1672 2083916 - 2083941 + F 100 -17.6 -4.86731 | opp_overlap 2083913 CGCCCGGAGACACTT GCGGGCTGCC CTGACC GGCAGCCCGC TTTTGTTTGCGCCGC RALTA_A1965 2084015 - 2084491 + | putative phosphatase, similar to phosphohistidine phosphatase SixA RALTA_A1966 2084631 - 2085581 + | conserved hypothetical protein, COG3176 (predicted hemolysin ) TERM 1673 2085587 - 2085572 - T 75 -11.8 -3.61398 | CCTCGGCCTGAACAA CGCCGC CTGA GCGGCG CCCCGCCACCGGGCC ppx 2087190 - 2085658 - | EXOPOLYPHOSPHATASE PROTEIN TERM 1674 2087000 - 2086970 - G 74 -12.4 -3.55563 | AGGCGATCGCCGAAA CGCCGCAGCGCATC GAT GCCGCGCCGCCGCG CGGGCTGGTCCAGGT TERM 1675 2089157 - 2089173 + G 71 -10.1 -3.72576 | GAGAACATCACGGTG CGCTCGA TCA TCGGGCG TTTCCTCGAACACCA ppk2 2087345 - 2089471 + | POLYPHOSPHATE KINASE PROTEIN TERM 1676 2089488 - 2089513 + T 91 -16.3 -3.60296 | opp_overlap 2089488 2089494, overlap 2089494 CGGCGCACAGGCAAA GAAAAACCCGC CGCG GCGGGTTTTTC TTTGCGATCAGGCTG TERM 1677 2089513 - 2089488 - T 93 -16.3 -3.70902 | opp_overlap 2089488 2089494, overlap 2089494 CGGCGCACAGGCAAA GAAAAACCCGC CGCG GCGGGTTTTTC TTTGCGATCAGGCTG TERM 1678 2089507 - 2089494 - T 100 -9.5 -5.31519 | opp_overlap 2089488 2089494, overlap 2089488 ACAGGCAAAGAAAAA CCCGC CGCG GCGGG TTTTTCTTTGCGATC TERM 1679 2089494 - 2089507 + T 100 -9.5 -5.28942 | opp_overlap 2089494 2089488, overlap 2089488 ACAGGCAAAGAAAAA CCCGC CGCG GCGGG TTTTTCTTTGCGATC phoR 2090903 - 2089521 - | sensory histidine kinase in two-component regulatory system with PhoB phoB 2091723 - 2091016 - | DNA-binding response regulator in two-component regulatory system with PhoR phoU 2092456 - 2091752 - | negative regulator of PhoR/PhoB two-component regulator pstB 2093292 - 2092504 - | Phosphate import ATP-binding protein, ABC transporter TERM 1680 2093319 - 2093343 + r 84 -11.3 -4.20367 | overlap 2093330 GCTTGCAGTCTTGGG GCGGTCCGCCT TAC GGGCGCGCCGC TTATTTCTTGAACAG pstA 2094255 - 2093344 - | Phosphate transport system permease, ABC transporter pstC 2095220 - 2094252 - | Phosphate transport system permease, ABC transporter pstS 2096369 - 2095338 - | Phosphate-binding periplasmic protein, ABC transporter TERM 1681 2095489 - 2095506 + g 70 -3.3 -4.39133 | gap 1, overlap 2095490 2095490 AAGAACTTCAGCACT TCCG-CGC CCT GCGCCGGC TTTTCCTGGTTCTTG TERM 1682 2096584 - 2096551 - R 75 -14.7 -2.78715 | opp_overlap 2096554 2096559, overlap 2096559 AATTGCGTTATGAGA TAAAAAAACGCCGGG TGAA CCCGGCGTTTTCTTT CTGGCATGAGCGCTA TERM 1683 2096554 - 2096581 + r 89 -14.2 -3.89346 | opp_overlap 2096551 2096559, overlap 2096559 TGCGTTATGAGATAA AAAAACGCCGGG TGAA CCCGGCGTTTTC TTTCTGGCATGAGCG TERM 1684 2096559 - 2096576 + r 100 -14.1 -4.99645 | opp_overlap 2096551 2096559, overlap 2096554 TATGAGATAAAAAAA CGCCGGG TGAA CCCGGCG TTTTCTTTCTGGCAT TERM 1685 2096576 - 2096559 - R 100 -14.1 -5.74122 | opp_overlap 2096559 2096554, overlap 2096551 TATGAGATAAAAAAA CGCCGGG TGAA CCCGGCG TTTTCTTTCTGGCAT glmM 2097943 - 2096600 - | phosphoglucosamine mutase TERM 1686 2097492 - 2097461 - G 75 -16.6 -2.92653 | gap 1 GCAGAATTCGATATA GCGGCCGGCCGCATC GTC GATGCGGCGGG-CGC GTCCCAGGTCGTCGG folP 2098873 - 2098007 - | Dihydropteroate synthase TERM 1687 2098944 - 2098924 - R 100 -14 -4.77757 | overlap 2098882 GCGCAAAAAGGAAAA GCCGGTGC GCCAG GCACCGGC TTCAGGGAGCTACTA ftsH 2100885 - 2099002 - | Cell division protein, ATP-dependent zinc-metallo protease; AAA ATPase and peptidase M41 families TERM 1688 2099476 - 2099448 - G 88 -13.1 -4.25104 | opp_overlap 2099439 2099462 2099464 2099466 TGGCGTTGAGGAAAA CCTCTTCCGCCGC GCG GCCGCCGAAGAGG ATGGCCACCTCTTCG rrmJ 2101708 - 2101043 - | Ribosomal RNA large subunit methyltransferase J TERM 1689 2101610 - 2101644 + g 73 -7.7 -4.13945 | gap 1, overlap 2101615 CTCCTTGAGCTTGTA TGCCGC-GCGCGCGCG ATAG CCCTCGCGCTGCGCCA TTTTGACGTACGGAT TERM 1690 2101732 - 2101763 + H 73 -6.4 -4.37971 | gap 1, overlap 2101759 CCAGCCTGTTGCCTG CCCGCGCGCGCTGGT CGG GCCGGCG-GCGAAGG TTTTCCTACTGTTTT TERM 1691 2102282 - 2102261 - g 89 -8 -4.86731 | gap 1, overlap 2102262 2102264 CCGCCTGAAAGAAAA CCAGGCCGA CGACC TCGGCC-GG CACACGCCCGCCCGC RALTA_A1980 2101968 - 2102471 + | putative RNA_binding protein RALTA_A1981 2103060 - 2102557 - | Conserved hypothetical protein, putative TRANSMEMBRANE PROTEIN TERM 1692 2103084 - 2103063 - R 74 -10.1 -3.76226 | AACTGGAGAACACAA GCCGGCC TTTCCGGT GGCCGGC ACAGGCGCAAGCGCC greA 2103592 - 2103116 - | transcription elongation factor TERM 1693 2103410 - 2103431 + g 70 -3.6 -4.4078 | CTCCACTTCCAGGAT GCGGCCCT CGATAA AGGCCTGC TTTTCCTTGGCGGCA TERM 1694 2103636 - 2103613 - R 100 -3.8 -5.7946 | gap 1, overlap 2103616 CGTTCAACAAAAAAA TGAGCCGCAGC GGA GCTGGAGC-CA TCCCTGGCAACCTCC TERM 1695 2103771 - 2103746 - R 89 -16.9 -3.16683 | gap 1, opp_overlap 2103746 AGTTTAGGCCAGGAA GCCCGCCGGCAG CAA CT-CCGGCGGGC TTCCTGGGCGGGCGG TERM 1696 2103746 - 2103771 + r 89 -16.9 -3.14132 | gap 1, opp_overlap 2103746 AGTTTAGGCCAGGAA GCCCGCCGGCAG CAA CT-CCGGCGGGC TTCCTGGGCGGGCGG TERM 1697 2103781 - 2103804 + r 100 -16 -4.19472 | gap 1, overlap 2103781 GCGGGCTTCCTGGGC GGG-CGGCCGC AAC GCGGCCGGCCC TTTTGCAATGTGTTG TERM 1698 2103781 - 2103803 + r 84 -16.2 -3.1096 | overlap 2103781 GCGGGCTTCCTGGGC GGGCGGCCGC AAC GCGGCCGGCC CTTTTGCAATGTGTT TERM 1699 2103855 - 2103891 + r 79 -15.9 -2.90571 | CAGGCCAGCGAGGCA TGCAGGCCCTGCAGGTC GTA GACCTCCAGGCTCTGCA TATGCTTCAGGCCTT carB 2107087 - 2103839 - | Carbamoyl-phosphate synthase large chain (Carbamoyl-phosphate synthetase ammonia chain) TERM 1700 2105360 - 2105393 + g 71 -2.4 -4.5448 | gap 2 CTCGATGCCCTGGCC GATC-CGGTTC-GGGC CGCC GCCCAGCACCATGATC TTCTTTTTGTCGGTC RALTA_A1984 2107854 - 2107177 - | putative amino acid efflux protein, RhtB family TERM 1701 2107661 - 2107618 - G 82 -16.7 -3.37796 | gap 1 CTTCACCACGTAGAA CAGCGCCGGGC-TGGCCTTG AGCAG CGAGGCCACGCCCGCCGCCG ACAGCACCATCAGCA carA 2109040 - 2107904 - | Carbamoyl-phosphate synthase small chain (Carbamoyl-phosphate synthetase glutamine chain) RALTA_A1986 2109808 - 2109398 - | Conserved hypothetical protein, yjgH family RALTA_A1987 2110279 - 2109854 - | putative 4-hydroxybenzoyl-CoA thioesterase family protein RALTA_A1988 2111964 - 2110276 - | putative AMP-dependent synthetase and ligase; ATP-dependent AMP-binding enzyme family RALTA_A1989 2113193 - 2112024 - | Putative acyl-CoA dehydrogenase family protein TERM 1702 2112174 - 2112198 + g 73 -7 -4.18018 | GCCGAACATCTGCAC CGCGCGGTCG ATCAC CTGCTGCGCG TTTTCGGTGGCGACC RALTA_A1990 2114051 - 2113200 - | putative enoyl-CoA hydratase RALTA_A1991 2114883 - 2114080 - | putative short-chain dehydrogenases/reductases (SDR) family protein RALTA_A1992 2117234 - 2114880 - | putative OXIDOREDUCTASE PROTEIN prpE 2119302 - 2117410 - | Propionate--CoA ligase TERM 1703 2119447 - 2119424 - R 100 -14.6 -5.21709 | gap 1, opp_overlap 2119424 CGGCACATGAAAAAA GGGGCG-TGCC GAC GGCATCGCCCC TTTTGCTGTCCCGGC TERM 1704 2119424 - 2119447 + r 100 -14.6 -4.34402 | gap 1, opp_overlap 2119424 CGGCACATGAAAAAA GGGGCG-TGCC GAC GGCATCGCCCC TTTTGCTGTCCCGGC mltD 2121171 - 2119483 - | Membrane-bound lytic murein transglycosylase D TERM 1705 2121232 - 2121220 - R 100 -4.7 -5.78622 | overlap 2121221 TGATGCTAAAAAAAA CCGCG TAT CGCGT CAATCAGATTTTCCA TERM 1706 2121231 - 2121221 - R 73 -8.2 -4.06089 | overlap 2121220 GATGCTAAAAAAAAC CGCG TAT CGCG TCAATCAGATTTTCC gloB 2122113 - 2121313 - | Hydroxyacylglutathione hydrolase RALTA_A1996 2122126 - 2122926 + | conserved hypothetical protein, putative methyltransferase rnhA 2123025 - 2123462 + | Ribonuclease H (RNase H) TERM 1707 2124086 - 2124111 + G 71 -11.1 -3.55563 | gap 1 CGGCGGCAGCGGCCA GGACGGC-GTGG TCA CCACCGCCGACC TTTCGAGGCTGACCT dnaQ 2123520 - 2124260 + | DNA polymerase III epsilon subunit TERM 1708 2124452 - 2124436 - T 71 -9.4 -3.7829 | opp_overlap 2124436 ACCAGATTCAGGAAA GCCAGC CTCGC GCTGGC TTTTTTCATTTCGGC TERM 1709 2124436 - 2124452 + T 100 -9.4 -5.37593 | opp_overlap 2124436 ACCAGATTCAGGAAA GCCAGC CTCGC GCTGGC TTTTTTCATTTCGGC RALTA_A1999 2125232 - 2124627 - | putative isochorismatase hydrolase family protein TERM 1710 2125699 - 2125674 - g 72 -6 -4.26076 | opp_overlap 2125681 GCAGCTCGATGAAAA GCTGCAGGGC CGCGCC GCCGTGCTGC ATCGGATGGCGCGCC RALTA_A2000 2125477 - 2127501 + | Putative diguanylate cyclase with associated PAS domain RALTA_A2001 2129346 - 2127607 - | putative ABC transporter periplasmic binding protein TERM 1711 2127817 - 2127868 + g 100 -13.5 -4.56597 | CATCTCTTCGGCCAG CGTGTCCATCGCGGCTTGCGGCG TCTTCT CGCCGGTTACCGCGGTGGCCACG TTTTTCCACCACAGC RALTA_A2002 2129762 - 2129454 - | putative transmembrane lipoprotein, COG5477 TERM 1712 2129640 - 2129612 - G 85 -17.4 -3.14051 | overlap 2129610 TCAGGCCGATGAAGA GCCGGTCGCCGC GGGTG GTGGCGACCGGC AGGAAGCCCTTGCGC RALTA_A2003 2130657 - 2129791 - | putative ABC transporter permease RALTA_A2004 2131534 - 2130650 - | putative ABC transporter permease ugpC2 2132637 - 2131531 - | sn-glycerol-3-phosphate transport ATP-binding protein ugpC1 2133762 - 2132641 - | sn-glycerol-3-phosphate transport ATP-binding protein TERM 1713 2132866 - 2132848 - G 70 -8.8 -3.92075 | ATCGGCATGGACAAA GGTGTCCG AAC CGGACAGC TCGGCCAGCGCCACG TERM 1714 2133217 - 2133250 + g 74 -14.7 -3.02461 | gap 1, opp_overlap 2133228, overlap 2133217 CACGGTGGCATCGCC G-TGCGCGAACAGCTG GGT CAGCTCTTCGCGCAGC TCTTCGCGCAGCTTG glpR 2133919 - 2134689 + | Glycerol-3-phosphate regulon repressor, DeoR family purU 2135728 - 2134862 - | Formyltetrahydrofolate deformylase RALTA_A2009 2136754 - 2135855 - | conserved hypothetical protein; putative exported protein TERM 1715 2136382 - 2136344 - G 77 -14.6 -3.15861 | overlap 2136326 CAGCAGCCCGAGGAA GCGCGCCGCGG-CGCGCT CCACC ACCGCGACCGCGG-GCGC GTTCAGCGCGGCGGT glpK 2136811 - 2138382 + | Glycerol kinase (ATP:glycerol 3-phosphotransferase) glpD 2138462 - 2140066 + | sn-glycerol-3-phosphate dehydrogenase, FAD/NAD(P)-binding protein RALTA_A2012 2140139 - 2140525 + | putative lipoprotein RALTA_A2013 2140617 - 2140997 + | hypothetical protein RALTA_A2014 2141336 - 2141052 - | hypothetical protein RALTA_A2015 2141665 - 2141441 - | hypothetical protein RALTA_A2016 2142189 - 2141779 - | Conserved hypothetical protein; putative exported protein TERM 1716 2141935 - 2141959 + g 74 -12.8 -3.66018 | opp_overlap 2141932 CTCATAGACATAGCC GGGCCGCTCG CGCTC CCAGCGGCCC TTCTTCCAGTCATGC TERM 1717 2142320 - 2142294 - R 71 -13.1 -3.01712 | gap 1 TGCCGGCGCGCAACA CTGTCGCGCAAG CCGG CTTGCGCG-CAG GCGGCCCTAGTGATC RALTA_A2017 2142530 - 2142327 - | hypothetical protein TERM 1718 2142614 - 2142588 - R 71 -10.7 -3.42574 | GCAACTCTAGCACAA GGCCCGCGGGC TCACC GGCCGCCGGCC TCGGTGGTGAAGCCA RALTA_A2018 2143003 - 2142599 - | conserved hypothetical protein, DUF1311 RALTA_A2019 2143530 - 2143069 - | Conserved hypothetical protein; putative transmembrane protein TERM 1719 2143420 - 2143372 - G 71 -10.2 -3.67792 | overlap 2143375 2143384 2143387 CCACACCCATGGAAA GAAGCGGCCAAACAC-GCCGCGCC ACA GGCGCAGCCGCGG-CGGCGGCTCC AGCAGGCTGCCGGCC TERM 1720 2143417 - 2143375 - G 72 -8.3 -3.9693 | overlap 2143372 2143384 2143387 CACCCATGGAAAGAA GCGGCCAAACAC-GCCGCGCC ACA GGCGCAGCCGCGG-CGGCGGC TCCAGCAGGCTGCCG TERM 1721 2143409 - 2143384 - G 71 -11.1 -3.59649 | gap 1, overlap 2143375 2143372 2143387 AAAGAAGCGGCCAAA CAC-GCCGCGCC ACA GGCGCAGCCGCG GCGGCGGCTCCAGCA RALTA_A2020 2143836 - 2144438 + | conserved hypothetical protein; putative exported protein RALTA_A2021 2144453 - 2145700 + | Putative diguanylate cyclase with HAMP domain RALTA_A2022 2145697 - 2146230 + | putative outer membrane protein, ompA family RALTA_A2023 2146512 - 2146240 - | hypothetical protein RALTA_A2024 2147429 - 2146572 - | Putative D-alanine aminotransferase ; class-IV pyridoxal-phosphate-dependent aminotransferase family TERM 1722 2147374 - 2147344 - G 79 -5.3 -4.78848 | gap 1 TCGCCAAAGATAAAA CCGCGGTCCAGCAC AGGG ATGCGGG-CCTCGG AGAGCGGAGTCAGGG RALTA_A2025 2148022 - 2147531 - | putative acyltransferase RALTA_A2026 2148213 - 2149190 + | Putative AB hydrolase superfamily protein; putative Lysophospholipase TERM 1723 2149344 - 2149307 - T 100 -23.7 -3.65902 | gap 1, opp_overlap 2149313, overlap 2149313 CCGAGCTCAGGCAAA CAA-AAAGGGCCGGGGTC AAT GACCCCGGCCCTTTGTTG ACCCTGCGGTTAGAA TERM 1724 2149337 - 2149313 - T 100 -22.9 -5.30616 | opp_overlap 2149313, overlap 2149307 TCAGGCAAACAAAAA GGGCCGGGGTC AAT GACCCCGGCCC TTTGTTGACCCTGCG TERM 1725 2149313 - 2149337 + T 100 -22.9 -4.16842 | opp_overlap 2149313 2149307 TCAGGCAAACAAAAA GGGCCGGGGTC AAT GACCCCGGCCC TTTGTTGACCCTGCG RALTA_A2027 2151590 - 2149539 - | putative SOLUTE:NA+ SYMPORTER PERMEASE TRANSMEMBRANE PROTEIN TERM 1726 2151626 - 2151666 + r 77 -13.2 -3.60475 | gap 1, opp_overlap 2151631, overlap 2151627 TGGGAGGCTATCGTA AC-AAACCCGCCGGCGCGC GGAT GCGCGGCGGCGGGTTCAGG TTTGGGCTCCGGCTT TERM 1727 2151627 - 2151665 + r 81 -16.7 -2.75963 | gap 1, opp_overlap 2151631, overlap 2151626 GGGAGGCTATCGTAA C-AAACCCGCCGGCGCGC GGAT GCGCGGCGGCGGGTTCAG GTTTGGGCTCCGGCT TERM 1728 2151660 - 2151631 - R 100 -22.1 -4.1822 | opp_overlap 2151627 2151626 GGCTATCGTAACAAA CCCGCCGGCGCGC GGAT GCGCGGCGGCGGG TTCAGGTTTGGGCTC acsA 2153681 - 2151699 - | Acetyl-coenzyme A synthetase TERM 1729 2154765 - 2154800 + G 72 -13.2 -3.13403 | overlap 2154763 CCGGGGTCTTCACCT CGGTGCTGCCGGTGGC CGCG GCCACCTACGGCATCG TCTTCCTGGGCGAAC RALTA_A2029 2153990 - 2154940 + | Conserved hypothetical protein; Putative permease of the drug/metabolite transporter (DMT) superfamily TERM 1730 2155486 - 2155509 + G 72 -8.8 -4.0162 | overlap 2155487 ACCCACACCATCATG TGGCAGGTGG CGAT CCACCTGGCG TTTCTGCTGTCGGCC RALTA_A2030 2155039 - 2155587 + | Conserved hypothetical protein, UPF0114; putative transmembrane protein TERM 1731 2155626 - 2155644 + F 100 -13.1 -5.1166 | CCTGCTTCGATCTGA CCGCGGC CATGT GCCGCGG TTTTTGCTTTTAGTC fumA 2155788 - 2157311 + | FUMARATE HYDRATASE PROTEIN murI 2157492 - 2158301 + | GLUTAMATE RACEMASE PROTEIN RALTA_A2033 2160639 - 2158327 - | putative ATPASE PROTEIN, AAA family RALTA_A2034 2160914 - 2160711 - | hypothetical protein RALTA_A2035 2161008 - 2161073 + | hypothetical protein TERM 1732 2161094 - 2161109 + F 80 -5.4 -4.89477 | gap 1 CACGGCCGCCAAGGT GTC-GCC GCC GGCAGAC TTTTGTTGTTGACAC tonB 2161125 - 2161781 + | TONB PROTEIN exbB1 2161851 - 2162579 + | BIOPOLYMER TRANSPORT PROTEIN TERM 1733 2162678 - 2162654 - g 70 -12.2 -3.28416 | opp_overlap 2162638 2162639 GATGAGCGAGATCAA CATGACGCCG CTGGT CGACGTCATG CTGGTGCTGCTGATC exbD1 2162601 - 2163014 + | BIOPOLYMER TRANSPORT PROTEIN TERM 1734 2163048 - 2163065 + F 86 -12.7 -4.0274 | opp_overlap 2163048 TCGCGGCACGACACA GGGCACC TTCG GGTGCCC TTATTTCATGGTGCC TERM 1735 2163065 - 2163048 - f 70 -12.7 -2.94099 | opp_overlap 2163048 TCGCGGCACGACACA GGGCACC TTCG GGTGCCC TTATTTCATGGTGCC RALTA_A2040 2163269 - 2163598 + | hypothetical protein TERM 1736 2163667 - 2163651 - T 81 -13.7 -3.6215 | GGAAGCGATTCGAAA TCCGCGC CAG GCGCGGA TACCACGAACGTGGC TERM 1737 2163806 - 2163835 + T 100 -15.7 -4.25104 | gap 1, overlap 2163807 2163808 ATGCCCTCTTTTATG C-CGCCCCGCAGGC CGT GCCTGCGGGGCATG TTTTGATGCACCGGC TERM 1738 2163807 - 2163833 + T 100 -19.4 -3.73042 | overlap 2163806 2163808 TGCCCTCTTTTATGC CGCCCCGCAGGC CGT GCCTGCGGGGCA TGTTTTGATGCACCG TERM 1739 2163808 - 2163832 + T 100 -22.9 -2.83504 | overlap 2163807 2163806 GCCCTCTTTTATGCC GCCCCGCAGGC CGT GCCTGCGGGGC ATGTTTTGATGCACC RALTA_A2041 2164278 - 2163871 - | conserved hypothetical protein, glcG family TERM 1740 2164397 - 2164414 + r 74 -12.7 -3.36327 | opp_overlap 2164397 CTCACCACGACAAAA TGGCCCG CGAG CGGGCCA TTGTCGATGCGATGG TERM 1741 2164414 - 2164397 - R 100 -12.7 -4.4891 | opp_overlap 2164397 CTCACCACGACAAAA TGGCCCG CGAG CGGGCCA TTGTCGATGCGATGG RALTA_A2042 2164702 - 2164445 - | conserved hypothetical protein; putative exported protein TERM 1742 2164941 - 2164912 - R 70 -10 -3.57462 | opp_overlap 2164918, overlap 2164913 2164918 CATCGCAGCCCCAAA GCGAAAGGGCCC GCGATG GGGCCCTTTCAG GGGAAAGCCGGATCG TERM 1743 2164940 - 2164913 - R 72 -13.5 -2.74263 | opp_overlap 2164918, overlap 2164912 2164918 ATCGCAGCCCCAAAG CGAAAGGGCCC GCGATG GGGCCCTTTCA GGGGAAAGCCGGATC TERM 1744 2164935 - 2164918 - R 76 -9.8 -3.84719 | opp_overlap 2164918, overlap 2164913 2164912 AGCCCCAAAGCGAAA GGGCCC GCGATG GGGCCC TTTCAGGGGAAAGCC RALTA_A2043 2165317 - 2164967 - | Conserved hypothetical protein; putative exported protein TERM 1745 2165997 - 2165972 - R 83 -7.5 -4.56597 | opp_overlap 2165977, overlap 2165977 GCGGTGCTGCAAAAA CTAAAGGGGGC GATT GCCCCCTTTTT CGCTGACTTCCGACC TERM 1746 2165992 - 2165977 - R 91 -11.8 -4.32046 | opp_overlap 2165977, overlap 2165972 GCTGCAAAAACTAAA GGGGGC GATT GCCCCC TTTTTCGCTGACTTC TERM 1747 2165977 - 2165992 + r 100 -11.8 -4.68424 | opp_overlap 2165977 2165972 GCTGCAAAAACTAAA GGGGGC GATT GCCCCC TTTTTCGCTGACTTC RALTA_A2044 2167125 - 2166019 - | hypothetical protein RALTA_A2045 2167224 - 2168165 + | putative transcriptional regulator, LysR family RALTA_A2046 2169447 - 2168215 - | putative monovalent cation:proton antiporter (CPA2) family protein TERM 1748 2168677 - 2168665 - G 95 -10.5 -5.0133 | overlap 2168667 CATGCCGGCAAAAAA CGCGC CCA GCGCG AACGACACGCCGAAC TERM 1749 2169764 - 2169781 + r 79 -14.1 -3.51329 | opp_overlap 2169764 CGGGGAAAACAAAAA CGGCGCC TTAA GGCGCCG TTCTGCTTGCAACTG TERM 1750 2169781 - 2169764 - R 100 -14.1 -5.45802 | opp_overlap 2169764 CGGGGAAAACAAAAA CGGCGCC TTAA GGCGCCG TTCTGCTTGCAACTG TERM 1751 2169966 - 2169982 + r 75 -12.3 -3.60792 | opp_overlap 2169966 CAACCCAAACAAAAA GGGAAGC GTT GCTTCCC TTTGGGGATTGGAGC TERM 1752 2169982 - 2169966 - R 100 -12.3 -5.33026 | opp_overlap 2169966 CAACCCAAACAAAAA GGGAAGC GTT GCTTCCC TTTGGGGATTGGAGC TERM 1753 2170086 - 2170116 + r 84 -11 -4.19746 | CAACTTTGACTGCCA GCCCCGCACCGCGA TGA TCGCGCTGCCGGAC TTCTTTTGACCTGGA pgsA 2170975 - 2170376 - | CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase uvrC 2173116 - 2171092 - | UvrABC system protein C (Excinuclease ABC subunit C) TERM 1754 2173760 - 2173804 + G 77 -15.5 -3.14132 | TTCGAGCCCGGCACC GGCGGCCTGCTGCGCGAATCG ATG CTGGGCGCGCAGCGTGCCGCC TTCCTCGACGGCGCG RALTA_A2049 2173289 - 2174452 + | hypothetical protein efp 2174657 - 2175217 + | ELONGATION FACTOR P TERM 1755 2175256 - 2175285 + T 95 -18.1 -3.53012 | opp_overlap 2175262, overlap 2175262 GCGCGGGGCGGTCAA CAAAAATGGCAGC CTCG GCTGCCATTTTTG TTTGCGCACGACCCG TERM 1756 2175262 - 2175279 + T 100 -11.3 -5.27335 | opp_overlap 2175262, overlap 2175256 GGCGGTCAACAAAAA TGGCAGC CTCG GCTGCCA TTTTTGTTTGCGCAC TERM 1757 2175279 - 2175262 - T 100 -11.3 -5.06414 | opp_overlap 2175262 2175256 GGCGGTCAACAAAAA TGGCAGC CTCG GCTGCCA TTTTTGTTTGCGCAC nagZ 2176380 - 2175313 - | Beta-hexosaminidase; N-acetyl-beta-glucosaminidase; Beta-N-acetylhexosaminidase acpS 2176799 - 2176377 - | holo-[acyl-carrier-protein] synthase; Holo-ACP synthase 4'-phosphopantetheinyl transferase acpS pdxJ 2177578 - 2176796 - | Pyridoxal phosphate biosynthetic protein recO 2178504 - 2177617 - | DNA repair protein era 2179496 - 2178561 - | 30S ribosomal subunit_binding GTPase rnc 2180263 - 2179493 - | Ribonuclease III RALTA_A2057 2180660 - 2180265 - | hypothetical protein TERM 1758 2180624 - 2180595 - G 73 -7.7 -4.2349 | gap 1, opp_overlap 2180605 2180609 CGTCCACACGGAAAA CCCGC-CAGCGCCG CCC CGGCGCCCTGCCGG ATGGTTTCCTGCCCC lepB 2181606 - 2180707 - | leader peptidase (signal peptidase I), serine protease TERM 1759 2180940 - 2180989 + g 72 -8.3 -4.08216 | gap 1, opp_overlap 2180938 2180939, overlap 2180938 2180941 CACCCGCGATAAACG CCGGCCGGTCGGCGTCGTTCA-GG ATG CCATGCTCGACGCCGCCCGGGAGC TTTTCGCGGAAATGA TERM 1760 2181396 - 2181406 + g 72 -6.8 -4.25104 | opp_overlap 2181382, overlap 2181379 ACTCCAGCCACCACG GCTG GCG CAGC TTTTCCTCGGCCAGG lepA 2183499 - 2181706 - | GTP-binding elongation factor TERM 1761 2183082 - 2183104 + g 78 -14.2 -3.61398 | GGATCGCGTTGTCGG GATCGGCCTG CGG CAGGTCGATC TTGTTCAGCACCGGC RALTA_A2060 2184001 - 2183696 - | hypothetical protein TERM 1762 2183909 - 2183935 + g 81 -12.2 -3.93262 | opp_overlap 2183910, overlap 2183910 CAGGGTAAAAGAAAA ATCGCGCCGGAG CGG CTCCAGCGCGAC TTTCATGTCTTCGCA TERM 1763 2183934 - 2183910 - G 100 -17.9 -5.46706 | opp_overlap 2183910 2183909 AGGGTAAAAGAAAAA TCGCGCCGGAG CGG CTCCAGCGCGA CTTTCATGTCTTCGC TERM 1764 2183910 - 2183934 + g 72 -15.7 -2.95475 | opp_overlap 2183910, overlap 2183909 AGGGTAAAAGAAAAA TCGCGCCGGAG CGG CTCCAGCGCGA CTTTCATGTCTTCGC degQ 2185495 - 2184008 - | serine endoprotease TERM 1765 2185552 - 2185531 - R 100 -3.7 -5.4593 | gap 1, opp_overlap 2185535 2185546, overlap 2185532 2185535 CGAAAAGAAGAAAAA CCGACTGGAT GTG ATCCCGT-GG CGGGGACCCTTCGCA RALTA_A2062 2186703 - 2185624 - | Sigma-E factor regulatory protein; rseB family TERM 1766 2186653 - 2186638 - G 90 -4.6 -5.27923 | CAAGGCCAGAAAAAA GGACCT ACGC AGGGCC CTAATTCTCTGCGCG RALTA_A2063 2187341 - 2186712 - | SIGMA-E FACTOR NEGATIVE REGULATORY PROTEIN; rseA family rpoE 2188061 - 2187462 - | RNA polymerase sigma-E factor RALTA_A2066 2188714 - 2188118 - | hypothetical protein TERM 1767 2188660 - 2188622 - G 100 -16.1 -4.36914 | gap 1, overlap 2188628 TTCGCCGGCACAAAA CACGAACAGGGCCCACCC CAGC GGGTGGACCCTGC-CATG GCGCAGCCCCTCAAG TERM 1768 2188655 - 2188628 - G 95 -19.2 -3.57825 | overlap 2188622 GGCACAAAACACGAA CAGGGCCCACCC CAGC GGGTGGACCCTG CCATGGCGCAGCCCC fabF 2189927 - 2188695 - | 3-oxoacyl-[acyl-carrier-protein] synthase II; Beta-ketoacyl-ACP synthase (KAS) TERM 1769 2190095 - 2190040 - R 100 -23.4 -3.93262 | gap 1, opp_overlap 2190052 2190053, overlap 2190051 TTCGAACAGACGAAA GCCACAGAAAACAGCAAGGCGCGGCCG CAA CGGCC-CGCCCACCTGCCTTCTGTGGC TCGGAATGCAGAGAC TERM 1770 2190084 - 2190051 - R 95 -10.9 -4.59081 | gap 1, opp_overlap 2190052 2190053, overlap 2190040 GAAAGCCACAGAAAA CAGCAAGGCGCGGCCG CAA CGGCC-CGCCCACCTG CCTTCTGTGGCTCGG acpP 2190357 - 2190118 - | acyl carrier protein fabG1 2191277 - 2190528 - | 3-oxoacyl-[acyl-carrier-protein] reductase fabD 2192223 - 2191294 - | Malonyl CoA-acyl carrier protein transacylase fabH 2193287 - 2192307 - | 3-oxoacyl-[acyl-carrier-protein] synthase III (Beta-ketoacyl-ACP synthase III) (KAS III) plsX 2194420 - 2193341 - | Fatty acid/phospholipid synthesis protein TERM 1771 2194241 - 2194271 + g 74 -12.7 -3.65046 | gap 2 GGTGGCCTCGACGAT GCTG-ACGCGC-GGA TGA TCCAGCGCGTGCAGC TTCTTCAGCTGCGCC TERM 1772 2194404 - 2194347 - G 79 -2.2 -4.86731 | gap 5, opp_overlap 2194399, overlap 2194349 2194351 TGGCGGGAAAGAAAA CTGATCG-CCGC--GGGCACCG-TCACGG ACACA CCGTGATCGCCGCCCATGCAGTCGAT-AG CGATTTTGATCGTCA TERM 1773 2194508 - 2194490 - R 100 -10.3 -5.4505 | opp_overlap 2194490 GCGCCCAACAAAAAA GCGGCAA CGATC TTGCCGC TTTTTTGTGTCTGAC TERM 1774 2194490 - 2194508 + r 100 -10.3 -5.4251 | opp_overlap 2194490 GCGCCCAACAAAAAA GCGGCAA CGATC TTGCCGC TTTTTTGTGTCTGAC rpmF 2194765 - 2194586 - | 50S ribosomal subunit protein L32 RALTA_A2075 2195472 - 2194882 - | hypothetical protein RALTA_A2076 2195668 - 2196267 + | conserved hypothetical protein, maf family TERM 1775 2196705 - 2196727 + G 71 -10.5 -3.75153 | TGCTGGCGGTGATGG GCTCGGGCC TGAAC GGCCAGAGC TTTGCCTTCAACGGC RALTA_A2077 2196293 - 2197024 + | hypothetical protein TERM 1776 2197076 - 2197044 - T 100 -17.2 -3.67141 | gap 1, opp_overlap 2197051, overlap 2197047 2197051 ACAACGGCACGGAAA TG-ACAAAGGGGGCG CTTG CGCCCCCTTTGTTCA CACGCTGCCGCGCCA TERM 1777 2197072 - 2197047 - T 91 -19.1 -2.94322 | opp_overlap 2197051, overlap 2197044 2197051 ACGGCACGGAAATGA CAAAGGGGGCG CTTG CGCCCCCTTTG TTCACACGCTGCCGC TERM 1778 2197068 - 2197051 - T 93 -14.1 -4.14725 | opp_overlap 2197051, overlap 2197047 2197044 CACGGAAATGACAAA GGGGGCG CTTG CGCCCCC TTTGTTCACACGCTG TERM 1779 2197051 - 2197068 + T 93 -14.1 -4.1552 | opp_overlap 2197047 2197044 2197051 CACGGAAATGACAAA GGGGGCG CTTG CGCCCCC TTTGTTCACACGCTG RALTA_A2078 2198292 - 2197096 - | Putative signal peptide peptidase, S49 family TERM 1780 2197809 - 2197829 + g 71 -11.1 -3.66178 | TGATGGCTTCGGCGC TTGCCGGCG TGC CGGCGGCAA TTTCCCCTTCGAGCG TERM 1781 2197978 - 2198004 + g 72 -3.7 -4.57073 | gap 1, opp_overlap 2197956 2197954 2197957, overlap 2197959 2197979 GCGCCGCGCCGCGCG TTGCTCG-CGCA GCGA TGCGGTGAGCAC TTTTTCCAGCACATC TERM 1782 2198219 - 2198230 + g 72 -3.6 -4.64676 | overlap 2198213 TCAGACGGTCCGGCT GCTC CGGT GGGC TTTTCTTCCGGCTGG RALTA_A2080 2198714 - 2198316 - | putative ferredoxin RALTA_A2081 2199366 - 2198707 - | PHOSPHOGLYCOLATE PHOSPHATASE PROTEIN rluC 2200398 - 2199397 - | Ribosomal large subunit pseudouridine synthase C TERM 1783 2200344 - 2200369 + g 76 -7.5 -4.37711 | gap 1 CATACGCCACCTGCG GGCTGGCCGGCG CAG CTTCGG-CAGCC TTTTCAATTTGATGG TERM 1784 2200468 - 2200482 + H 72 -2.1 -4.6902 | overlap 2200458 GTAAGCGATGGATCT TCGAG TTTTC TTCGA TTTTTCGCATTCTAC TERM 1785 2200595 - 2200577 - H 79 -8.1 -4.29432 | overlap 2200580 CAAATGGCAGCAAAA GCAGCAC GCACG GTGCCGC CGGCATGCAGGAAGT TERM 1786 2200707 - 2200682 - H 89 -14.7 -3.8802 | opp_overlap 2200683, overlap 2200676 2200683 AAAACAGAATTTAAA GGCGGATGCCG CAGC CGGCATCCGCT TCGGTGAGAGAAGTC TERM 1787 2200683 - 2200706 + H 90 -18.2 -3.05463 | opp_overlap 2200683 2200682 2200676 AAACAGAATTTAAAG GCGGATGCCG CAGC CGGCATCCGC TTCGGTGAGAGAAGT TERM 1788 2200706 - 2200683 - H 90 -18.2 -2.91185 | opp_overlap 2200683, overlap 2200682 2200676 AAACAGAATTTAAAG GCGGATGCCG CAGC CGGCATCCGC TTCGGTGAGAGAAGT TERM 1789 2200968 - 2201000 + H 73 -11.3 -3.54951 | gap 1, overlap 2200953 2200986 TCCGGCACGGGAATG CGCCGGATGTCTGC GCAAGA GCAGCC-TCCGGCG TTCTCTCCTGCCCTG TERM 1790 2201621 - 2201586 - g 74 -12.4 -3.63515 | gap 1 GCTGATGCCGAACAA CCCGCGCGGCGGCGGCG TGT CGC-GCCGCATCGAGGG CGAAGACCGCCAGGA rne 2201191 - 2204286 + | Ribonuclease E TERM 1791 2204319 - 2204339 + F 100 -18.3 -5.14563 | opp_overlap 2204319 CAGCCAAGGCAAGAA GGGGACGGC CAC GCCGTCCCC TTTTTTCATCGGCGG TERM 1792 2204339 - 2204319 - f 100 -18.3 -3.73783 | opp_overlap 2204319 CAGCCAAGGCAAGAA GGGGACGGC CAC GCCGTCCCC TTTTTTCATCGGCGG TERM 1793 2204963 - 2204923 - g 80 -15.9 -3.21416 | GACGCTCACCACCAA CGCCTCGCTGCTGGCGCGC AAG GCGCGCGCGCTGCGCGACG CGGGCCTGACGCGGG moaA 2204468 - 2205637 + | MOLYBDENUM COFACTOR BIOSYNTHESIS PROTEIN A mobA 2205658 - 2206257 + | molybdopterin-guanine dinucleotide biosynthesis protein A moeA1 2206294 - 2207592 + | Molybdopterin biosynthesis protein RALTA_A2087 2207786 - 2208067 + | Conserved hypothetical protein, putative TRANSMEMBRANE PROTEIN RALTA_A2088 2209647 - 2208148 - | putative DNA recombination protein, rmuC family; putative exported protein RALTA_A2089 2210652 - 2209657 - | putative D-isomer specific 2-hydroxyacid dehydrogenase family protein RALTA_A2090 2212072 - 2210657 - | Conserved hypothetical protein, transmembrane; putative permease TERM 1794 2211604 - 2211572 - G 81 -10.5 -4.24745 | opp_overlap 2211574 2211575, overlap 2211575 CACCAGGAAGATAAA GAACACCACCACGTG CGC CACGTGGCGGCGGTT GTCATTGGCGCGCAA TERM 1795 2211601 - 2211575 - G 100 -16.6 -4.2338 | opp_overlap 2211574 2211575, overlap 2211572 CAGGAAGATAAAGAA CACCACCACGTG CGC CACGTGGCGGCG GTTGTCATTGGCGCG TERM 1796 2212201 - 2212225 + r 75 -14.2 -2.71011 | CATGCATTTTCGGAT TGCGGCGCGC TGTCT GCGCGCCGCC TGGTTCAGGCCCCGT RALTA_A2091 2212916 - 2212230 - | hypothetical protein TERM 1797 2212534 - 2212516 - G 71 -2.3 -4.59853 | overlap 2212481 2212518 2212519 GCAATTGCGCAAAAA CAGCCGG TGATG CCGACCA GGTCGCCATGCTCGC pncB 2214179 - 2213001 - | nicotinate phosphoribosyltransferase RALTA_A2093 2214547 - 2214870 + | putative FERREDOXIN PROTEIN RALTA_A2094 2214957 - 2216066 + | putative THIOREDOXIN REDUCTASE; class-II pyridine nucleotide-disulfide oxidoreductase family. TERM 1798 2216091 - 2216104 + T 100 -9.5 -5.60993 | opp_overlap 2216091 2216093, overlap 2216076 GCCTCGCAGAAAAAA CCGCC GCGA GGCGG TTTTTTTCTGGCACA TERM 1799 2216104 - 2216091 - T 100 -9.5 -5.24129 | opp_overlap 2216076 2216091, overlap 2216093 GCCTCGCAGAAAAAA CCGCC GCGA GGCGG TTTTTTTCTGGCACA TERM 1800 2216393 - 2216414 + T 100 -17.3 -4.98531 | opp_overlap 2216393 CCAACCGATACGGAA GCCCGGTGC AAAC GCACCGGGC TTTTTCGTTTGCGCG TERM 1801 2216414 - 2216393 - T 89 -17.3 -3.14522 | opp_overlap 2216393 CCAACCGATACGGAA GCCCGGTGC AAAC GCACCGGGC TTTTTCGTTTGCGCG RALTA_A2095 2217258 - 2216491 - | Putative transcription regulator, IclR family. RALTA_A2096 2218478 - 2217318 - | Putative Formyl-CoA transferase; caiB/baiF CoA-transferase family RALTA_A2097 2219657 - 2218491 - | putative Acyl-CoA dehydrogenase RALTA_A2098 2220674 - 2219697 - | conserved hypothetical protein, UPF0065 RALTA_A2099 2221111 - 2220722 - | conserved hypothetical protein, RmlC-like cupin domain TERM 1802 2220879 - 2220842 - G 73 -9.7 -3.90744 | gap 1, overlap 2220845 2220849 2220850 GTCGGGGGGAAAGAA GCAGCAATCGCCGGG-GC CCA GCTCCCGGCGCTGCCCGC CGACCTCGGCGACGG TERM 1803 2220932 - 2220961 + g 79 -5.5 -4.68593 | overlap 2220937 GACCTGTTCGATACC GGGATGCGCGTGC GGCA GCGCGCCCTTGCC TTTTTCGATGGTGCC TERM 1804 2221169 - 2221179 + H 74 -5.4 -4.62783 | TATCCATGAATTTAT TCGT CAA ACGA TTTTTGGCGTGAGTG rpsU2 2221579 - 2221791 + | 30S ribosomal subunit protein S21 TERM 1805 2221834 - 2221851 + F 100 -12.7 -5.60993 | opp_overlap 2221834 GCGGGGCAAGAAAAA CCGCCAG TTCG CTGGCGG TTTTTTTATGCCCGC TERM 1806 2221851 - 2221834 - f 100 -12.7 -5.06414 | opp_overlap 2221834 GCGGGGCAAGAAAAA CCGCCAG TTCG CTGGCGG TTTTTTTATGCCCGC TERM 1807 2222382 - 2222367 - g 72 -8.2 -4.07568 | CGCGCGGCTGGAAAA CCGCGC CGAC GCGCAG GTGCGCGACCTCTCC RALTA_A2101 2221987 - 2222898 + | putative ABC TRANSPORTER, ATP-BINDING component TERM 1808 2223676 - 2223701 + G 81 -12.5 -3.89346 | overlap 2223651 CCCGGTCGACGGCGC CGGCCTGCATC TTGC GGTGCTGGCCG TTTATGCAGTGGCCG RALTA_A2102 2222912 - 2223763 + | putative ABC TRANSPORTER, membrane component RALTA_A2103 2223803 - 2224138 + | conserved hypothetical protein; putative transmembrane protein metZ 2225348 - 2224143 - | O-succinylhomoserine sulfhydrylase (OSH sulfhydrylase) TERM 1809 2225425 - 2225394 - R 82 -15 -3.29144 | CGATGGTTTCGACAA GCTGCGCACCGGCC CGGT GGACGGCGCGCGGC CATGAAAAAAGCCCG TERM 1810 2225436 - 2225467 + r 79 -13.8 -3.41745 | gap 1, opp_overlap 2225436 GCGGCCATGAAAAAA GCCCGTGCGATCGGA TGG TCGGATCG-ACGGGC TTGCTGTTCTGCGAA TERM 1811 2225467 - 2225436 - R 100 -13.8 -5.14563 | gap 1, opp_overlap 2225436 GCGGCCATGAAAAAA GCCCGTGCGATCGGA TGG TCGGATCG-ACGGGC TTGCTGTTCTGCGAA TERM 1812 2225654 - 2225622 - R 81 -13.3 -3.79519 | opp_overlap 2225622 2225643, overlap 2225623 AAGCTGACTATCAAA TCGACGCCCGGCCAT GTT ACGGCCGGGCCCCGC ATTCGTCAACGCGCG TERM 1813 2225653 - 2225623 - R 83 -16.8 -2.87229 | opp_overlap 2225622 2225643, overlap 2225622 AGCTGACTATCAAAT CGACGCCCGGCCAT GTT ACGGCCGGGCCCCG CATTCGTCAACGCGC purF 2227208 - 2225679 - | amidophosphoribosyltransferase (PRPP amidotransferase) cvpA 2227810 - 2227313 - | COLICIN V PRODUCTION TRANSMEMBRANE PROTEIN RALTA_A2107 2228592 - 2227852 - | conserved hypothetical protein; putative TRANSMEMBRANE PROTEIN TERM 1814 2227954 - 2227974 + g 78 -6.7 -4.65933 | opp_overlap 2227937, overlap 2227956 GGCACGCAGCAGGAT GCGCTCGCC GTC GGCCAGCAC TTTCTTTTCGACATA folC 2230011 - 2228701 - | bifunctional: folylpolyglutamate synthase; dihydrofolate synthase accD 2231113 - 2230241 - | acetylCoA carboxylase, carboxyltranferase subunit beta trpA 2232091 - 2231294 - | tryptophan synthase, alpha chain RALTA_A2111 2233022 - 2232093 - | DNA-METHYLTRANSFERASE (DNA-MODIFICATION METHYLASE) PROTEIN; Adenine-specific methyltransferase, N4/N6-methyltransferase family trpB 2234215 - 2233022 - | tryptophan synthase, beta subunit trpF 2235062 - 2234340 - | N-(5'-PHOSPHORIBOSYL)ANTHRANILATE ISOMERASE PROTEIN truA 2235867 - 2235049 - | tRNA pseudouridylate synthase I TERM 1815 2235920 - 2235946 + r 86 -18.1 -2.52464 | opp_overlap 2235920 AGCCGGAAAAGCAAA TGCGCCGGAAG GGACG CTTCCGGCGCA TCGCTTCAGGCCGCG TERM 1816 2235946 - 2235920 - R 100 -18.1 -4.20136 | opp_overlap 2235920 AGCCGGAAAAGCAAA TGCGCCGGAAG GGACG CTTCCGGCGCA TCGCTTCAGGCCGCG RALTA_A2115 2238842 - 2235996 - | conserved hypothetical protein with potential LysM domains TERM 1817 2236842 - 2236880 + g 83 -8.6 -4.58283 | opp_overlap 2236841 2236842, overlap 2236844 TCTGTTGCTGTAAAT CTCCAGGAGCTTGAGCCG TAC CGGCTGCTGCTCCGGGTG TTTTTCCAGGGCTTC TERM 1818 2236844 - 2236878 + g 73 -9.8 -3.90316 | opp_overlap 2236842 2236841, overlap 2236842 TGTTGCTGTAAATCT CCAGGAGCTTGAGCCG TAC CGGCTGCTGCTCCGGG TGTTTTTCCAGGGCT TERM 1819 2237536 - 2237571 + g 100 -13.2 -4.48987 | gap 1, overlap 2237534 2237536 GCCGGTACCACGACC GG-TGCCGCCGCAGCCG CCC TGGCGGCGGCGTCAGCC TTTTCCTTGTCAGCC TERM 1820 2237536 - 2237570 + g 74 -13.4 -3.2891 | overlap 2237534 2237536 GCCGGTACCACGACC GGTGCCGCCGCAGCCG CCC TGGCGGCGGCGTCAGC CTTTTCCTTGTCAGC TERM 1821 2237972 - 2238027 + g 74 -13.9 -3.36273 | CGGCCTTGGGTGTCA CCGCCTGTGCCTGCTGCGGGGT-CGGC ACCT GCAGCACCGCGCCGCTG-CGCAGGCGG TTCATGTTGCCGCCG TERM 1822 2238952 - 2239008 + r 93 -17.8 -3.30124 | gap 1, overlap 2238954 2238955 ATTCTGAACGATCCC TTTGCCGGCCCGCGCGCAGGCGCCAGC TCCT GCCGGCGCCGG-GCGCATGCCGGCGTA TTGTGACGCATCGCA TERM 1823 2238954 - 2239006 + r 95 -20.4 -3.21924 | gap 1, overlap 2238952 2238955 TCTGAACGATCCCTT TGCCGGCCCGCGCGCAGGCGCCAGC TCCT GCCGGCGCCGG-GCGCATGCCGGCG TATTGTGACGCATCG TERM 1824 2238955 - 2239005 + r 100 -21.7 -2.5294 | gap 1, overlap 2238954 2238952 CTGAACGATCCCTTT GCCGGCCCGCGCGCAGGCGCCAGC TCCT GCCGGCGCCGG-GCGCATGCCGGC GTATTGTGACGCATC TERM 1825 2239074 - 2239049 - R 95 -18.3 -3.48276 | overlap 2239052 GGCGTCCGGATACAA CAACGCCGCGC ACGG GCGCGGCGTCG TCAGCAAAGCGCTGC TERM 1826 2239071 - 2239052 - R 95 -16.4 -3.88232 | overlap 2239049 GTCCGGATACAACAA CGCCGCGC ACGG GCGCGGCG TCGTCAGCAAAGCGC asd 2240280 - 2239144 - | aspartate-semialdehyde dehydrogenase, NAD(P)-binding RALTA_A2117 2240502 - 2240371 - | hypothetical protein; putative exported protein leuB 2241714 - 2240647 - | 3-isopropylmalate dehydrogenase leuD1 2242387 - 2241737 - | 3-isopropylmalate isomerase, subunit with LeuC leuC1 2243816 - 2242407 - | 3-isopropylmalate isomerase TERM 1827 2244145 - 2244115 - R 100 -21.1 -3.45118 | opp_overlap 2244132, overlap 2244116 GGATGGCAGAAGGAA GCGGCCGCCGCGC TCGAG GCGCGGCGGCCGG CCGGCGTCAGCCGCC TERM 1828 2244144 - 2244116 - R 100 -24.6 -2.6675 | opp_overlap 2244132, overlap 2244115 GATGGCAGAAGGAAG CGGCCGCCGCGC TCGAG GCGCGGCGGCCG GCCGGCGTCAGCCGC livF1 2244853 - 2244152 - | high-affinity branched-chain amino acid transport protein (ABC superfamily, atp_bind) livG1 2245638 - 2244853 - | high-affinity branched-chain amino acid transport protein (ABC superfamily, atp_bind) livM1 2246918 - 2245635 - | high-affinity branched-chain amino acid transport protein (ABC superfamily, membrane) TERM 1829 2246171 - 2246185 + g 71 -11.4 -3.64703 | GCGTGCCCTCGACGC TGGCGC TGC GCGCCA TTTCGATGCCGAACA livH1 2247858 - 2246932 - | high-affinity branched-chain amino acid transport protein (ABC superfamily, membrane) TERM 1830 2247922 - 2247896 - R 100 -22.3 -3.4678 | AGCCCGATACCAGAA CGCCCCGCCCG GGGTA CGGGCGGGGCG TGTGCGGGAGGGAGC livK1 2249059 - 2247944 - | high-affinity branched-chain amino acid transport protein (ABC superfamily, peri_bind) TERM 1831 2248864 - 2248886 + g 79 -14.8 -3.37493 | CCACCTCGAACTTGT TGCCGCCGGC GCC GCCGGCCGCA TTGATCTGTTCGACG TERM 1832 2249456 - 2249482 + r 71 -9.4 -3.76492 | opp_overlap 2249435 2249456 ACAATCCTCCACGAA TTGCGCCCGGGA CCA TTCGGGGTGCAA TTTCCTGCCCTTGCC TERM 1833 2249562 - 2249535 - R 95 -19.2 -3.51934 | opp_overlap 2249532, overlap 2249539 CCCGGCCCACAAAGA CAAACGCCCCGG CGGG CCGGGGCGTCTG GAATTGCTGCACTGC TERM 1834 2249558 - 2249539 - R 100 -16.4 -4.40003 | opp_overlap 2249532, overlap 2249535 GCCCACAAAGACAAA CGCCCCGG CGGG CCGGGGCG TCTGGAATTGCTGCA gltA 2250896 - 2249595 - | citrate synthase RALTA_A2127 2251227 - 2250940 - | conserved hypothetical protein; TPR repeat region TERM 1835 2251240 - 2251282 + r 72 -11.9 -3.27298 | overlap 2251241 CATGGCTTCCTACTT TCGGCGCGCCCGCCAGA TATAGCCGC TCTGGCTGACGCGCCGC TTACTACTTGGACGG TERM 1836 2251241 - 2251281 + r 77 -15.4 -2.56164 | overlap 2251240 ATGGCTTCCTACTTT CGGCGCGCCCGCCAGA TATAGCCGC TCTGGCTGACGCGCCG CTTACTACTTGGACG sdhB 2252007 - 2251306 - | succinate dehydrogenase, Fe-S protein sdhA 2253820 - 2252042 - | succinate dehydrogenase, catalytic and NAD/flavoprotein subunit sdhD 2254189 - 2253824 - | succinate dehydrogenase, hydrophobic subunit, cytochrome b556 with SdhC sdhC 2254611 - 2254201 - | succinate dehydrogenase, hydrophobic subunit, cytochrome b556 with SdhD TERM 1837 2254540 - 2254568 + g 74 -14.7 -3.02511 | opp_overlap 2254565 GCCGGCCCAGGGCAA CCGGTATTTCGCA ATC TGCGAAATACCGA TATTCCGGAACTCCG RALTA_A2132 2255610 - 2254888 - | putative TRANSCRIPTION REGULATOR PROTEIN; GntR family mdh 2256199 - 2257182 + | MALATE DEHYDROGENASE TERM 1838 2257248 - 2257204 - f 90 -15.8 -3.737 | gap 1, opp_overlap 2257206, overlap 2257206 CAACGCTCGACGAAA GACCGGGGTTCCGCAACGATT CAAG AATCGGCGCGG-ACCCCGGTT TTTTCATAGGCAGCG TERM 1839 2257246 - 2257206 - f 95 -18.4 -3.45027 | gap 1, opp_overlap 2257206, overlap 2257204 ACGCTCGACGAAAGA CCGGGGTTCCGCAACGATT CAAG AATCGGCGCGG-ACCCCGG TTTTTTCATAGGCAG TERM 1840 2257206 - 2257246 + F 100 -16.2 -5.14563 | gap 1, opp_overlap 2257204 2257206 ACGCTCGACGAAAGA CCGGGGTTCCGCAACGATT CAAG AATCGGCGCGGA-CCCCGG TTTTTTCATAGGCAG TERM 1841 2258151 - 2258115 - g 87 -19.6 -3.06696 | CCGGCGCGGAAGAGA TCG-GCGCGGCCAGCGAG ATC CT-GCTGGCCGCGCACGA GAACAACTGGGCACC RALTA_A2134 2257397 - 2258290 + | putative citrate LYASE PROTEIN prpC2 2258345 - 2259553 + | methylcitrate synthase (citrate synthase 2) TERM 1842 2259907 - 2259849 - g 100 -22.3 -3.71848 | gap 2, overlap 2259834 2259846 2259850 GTCGTCGACCAAGAA GGCCGCCGCGGGCGCGGCCGCCGCGGCCG GCA CCGCCGCGGCGGTGGC-CCCG-AGCGGCG AGAAGTGGCAGTGCG TERM 1843 2259906 - 2259850 - g 100 -25.8 -2.82895 | gap 2, overlap 2259834 2259846 2259849 TCGTCGACCAAGAAG GCCGCCGCGGGCGCGGCCGCCGCGGCCG GCA CCGCCGCGGCGGTGGC-CCCG-AGCGGC GAGAAGTGGCAGTGC RALTA_A2136 2259730 - 2260287 + | conserved hypothetical protein; putative exported protein TERM 1844 2260343 - 2260288 - f 95 -20.3 -3.18264 | opp_overlap 2260297, overlap 2260267 GCGCCCAGGCAGTAA GCCATGACGGGGCGCTGGCGGCCGC TGCATG GCGGCCGCCAGCGCCCTTTTTTGCC TTGCCGTGCCGGGTG TERM 1845 2260297 - 2260334 + F 100 -32.1 -5.15969 | opp_overlap 2260267 2260288 CAGTAAGCCATGACG GGGCGCTGGCGGCCGCT GCAT GGCGGCCGCCAGCGCCC TTTTTTGCCTTGCCG TERM 1846 2262476 - 2262508 + G 78 -16.9 -3.04322 | overlap 2262466 AGCCGTCGGCGGCCT CGGCCAGCGTGCGCG GCG CGCGCGCGCTGGGCA TCTTCGGCGATTCGG acnA2 2260504 - 2263209 + | aconitate hydratase 1 TERM 1847 2263229 - 2263269 + F 100 -15.4 -6.23209 | gap 1, overlap 2263230 CCGGCGCGTCATGGA CGCCGCCT-GCCCTGCCCC GTCG GGGGTAAGGCCAGGCGGCA TTTTTTTTTCATTGG TERM 1848 2263230 - 2263268 + F 100 -18.9 -4.31485 | gap 1, overlap 2263229 CGGCGCGTCATGGAC GCCGCCT-GCCCTGCCCC GTCG GGGGTAAGGCCAGGCGGC ATTTTTTTTTCATTG TERM 1849 2263390 - 2263373 - f 71 -9.1 -3.78934 | overlap 2263374 TGTGTCGCACAACAA CGCGGTG GCAT CACCGCA AGCCGGACCCCGGCA RALTA_A2138 2263428 - 2263583 + | conserved hypothetical protein; putative exported protein RALTA_A2139 2263691 - 2264893 + | hypothetical protein TERM 1850 2264922 - 2264940 + T 100 -17.4 -4.88405 | opp_overlap 2264922 CGCCAGACCGCGAAA CGGCCCGC GTT GCGGGCCG TTTTCTTTGCGCGTT TERM 1851 2264940 - 2264922 - T 100 -17.4 -3.59262 | opp_overlap 2264922 CGCCAGACCGCGAAA CGGCCCGC GTT GCGGGCCG TTTTCTTTGCGCGTT RALTA_A2140 2265641 - 2264955 - | putative S-adenosylmethionine-dependent methyltransferase TERM 1852 2265326 - 2265363 + g 75 -8.3 -4.12188 | gap 1 AATTGGCCGGCATCG GCGCGTCGCC-CCACCAG TCC TTGCCGGCGGCGAGGCGC TTTTCGGACTGGTCG TERM 1853 2265819 - 2265850 + G 78 -14.4 -3.65812 | gap 1 CCGTGCCACCCCTGG GCGCCGC-ACGGTAC TCC GTGCCGCCGCGGCGC TTGTCTTCGGCAGCG RALTA_A2141 2265760 - 2267400 + | putative extracellular solute-binding protein TERM 1854 2267424 - 2267455 + T 78 -14.4 -3.09516 | overlap 2267416 GCGCGCCGGGGCCTT GCGCCTCTCTCCCG CCTG CGGAAGAGAGACGC TTAAATCCTCAACCG RALTA_A2142 2268328 - 2267456 - | putative spermidine synthase (speE-like) RALTA_A2143 2269136 - 2268384 - | conserved hypothetical protein; putative TRANSMEMBRANE PROTEIN TERM 1855 2269221 - 2269195 - R 82 -11.5 -4.04206 | gap 1 GCATTGTGACAGAAA GGCGCGGCGGCG GTCC CGGCGCCG-GCC TTGGACATGGCCAGC TERM 1856 2269335 - 2269289 - R 100 -31.7 -5.40072 | gap 1, opp_overlap 2269289, overlap 2269291 GCGCCGGCAAAAAAA GC-GGCCCCGGCGGCGCCGGTT TCGC AACCGGTGCCGCCGGGGCCCGC TTCTTGCCGCGCGCC TERM 1857 2269289 - 2269335 + r 100 -33.9 -3.61398 | gap 1, opp_overlap 2269289 2269291 GCGCCGGCAAAAAAA GC-GGCCCCGGCGGCGCCGGTT TCGC AACCGGTGCCGCCGGGGCCCGC TTCTTGCCGCGCGCC TERM 1858 2269332 - 2269291 - R 100 -33.1 -2.89655 | opp_overlap 2269289, overlap 2269289 GCCGGCAAAAAAAGC GGCCCCGGCGGCGCCGGTT TCGC AACCGGTGCCGCCGGGGCC CGCTTCTTGCCGCGC RALTA_A2144 2269794 - 2269357 - | putative Universal stress protein; UspA family RALTA_A2145 2270527 - 2270024 - | hypothetical protein htpG 2272564 - 2270663 - | chaperone Hsp90 RALTA_A2147 2274233 - 2272683 - | putative TRANSCRIPTION REGULATOR PROTEIN; GntR family TERM 1859 2274176 - 2274212 + g 73 -16.6 -2.52933 | gap 2, overlap 2274175 2274184 CTCGGCTATCCTTCT GGCGG-GCC-GCGGCGGC GAT GTCGCCGCCGGCGTCGCC CTTGCTGGATTGGGC RALTA_A2148 2274318 - 2274995 + | hypothetical protein RALTA_A2149 2275027 - 2275740 + | putative ALANYL-TRNA SYNTHETASE TERM 1860 2275879 - 2275922 + G 74 -13 -3.54741 | gap 1, overlap 2275881 GCGGGGCCAACTTCG GCCTGCGCGCGACGCTGCCGC ATT GCGTCGGCGTCGCCTTC-GGC TTTGCCAGCATCCTG RALTA_A2150 2275737 - 2276399 + | hypothetical protein TERM 1861 2276705 - 2276752 + G 87 -8.2 -4.67982 | gap 1, opp_overlap 2276703 2276702, overlap 2276707 CGCGGCCGACAATGG CCGCGGCTGGCC-GTGACCGCGC TGG GCGTGGTGGCCGGCTTCCCGCTG TTTTCTTCGCTGGCC TERM 1862 2276707 - 2276750 + G 70 -9.4 -3.95554 | gap 1, opp_overlap 2276703 2276702, overlap 2276705 CGGCCGACAATGGCC GCGGCTGGCC-GTGACCGCGC TGG GCGTGGTGGCCGGCTTCCCGC TGTTTTCTTCGCTGG TERM 1863 2276817 - 2276872 + G 70 -13.1 -3.39327 | gap 1, overlap 2276816 2276860 TGATCGGGCTGCTGC CGCTGGCGACCGCGGTGTTCGCCGCG TGGTT CG-GGCGCGAGCGGCCGTCGCCGGCG TTCTGGCTGTCGGCG RALTA_A2151 2276438 - 2277442 + | conserved hypothetical protein, DUF6; putative TRANSMEMBRANE PROTEIN RALTA_A2152 2277454 - 2277921 + | putative endoribonuclease; L-PSP family TERM 1864 2278088 - 2278112 + G 74 -16.4 -2.72344 | GGAGGTCATTTCGTT CGCCGGCGGC CTGCC GTCGCCGGCG TCGTTCCCGGTAGCG TERM 1865 2278554 - 2278496 - g 70 -12 -3.33261 | GCCCAACTTCCAGAA CCCGACCGGGCGCCGCCTGCCGCTGGAG CGC CGCCAGGCGCTGGTGGCGCGCGCGCAGG AACTGGGCGTGCTGC RALTA_A2153 2277993 - 2279177 + | putative AMINOTRANSFERASE PROTEIN RALTA_A2154 2279227 - 2279871 + | putative Glutathione S transferase TERM 1866 2279853 - 2279885 + T 86 -15.6 -3.5393 | overlap 2279857 CGCGGGCGGCATCCT GGAACTGCCGCTGC GCTGA GCCGCGGCAGTTTC TTTACCCGCCCTCCT TERM 1867 2279857 - 2279881 + T 100 -12.8 -4.41348 | overlap 2279853 GGCGGCATCCTGGAA CTGCCGCTGC GCTGA GCCGCGGCAG TTTCTTTACCCGCCC RALTA_A2155 2280549 - 2279899 - | putative Lysine exporter protein (LYSE/YGGA) TERM 1868 2280003 - 2279953 - G 91 -15.3 -3.87815 | gap 2, overlap 2279954 CCCCAGCCCGATAAA GGCCGCGCCGGTCAGGTA-GCG-GC CCA GCGCGCGCGCCCGGCCGGCGCGGCG CAGCGCCGGCATCAC TERM 1869 2280002 - 2279954 - G 82 -18.8 -2.92475 | gap 2, overlap 2279953 CCCAGCCCGATAAAG GCCGCGCCGGTCAGGTA-GCG-GC CCA GCGCGCGCGCCCGGCCGGCGCGGC GCAGCGCCGGCATCA TERM 1870 2280307 - 2280289 - G 79 -14.6 -3.28119 | opp_overlap 2280292 ACCGAGCCAGATCAA GTACGCCG CCC CGGCGTAC TTGACCACCGTAAAG TERM 1871 2281032 - 2281056 + G 75 -10 -4.04806 | gap 1 CGCGGGCATTCCCGT CGCC-GTGCTG CTGG CAGCGCTGGCG TTCTTTCATATGCAG RALTA_A2156 2280964 - 2282646 + | putative glycolate/Lactate permease (LctP family) TERM 1872 2282701 - 2282681 - f 81 -13.9 -3.54475 | opp_overlap 2282682 2282695, overlap 2282682 GCGCGTATCAGACAA GGCCCCGCC CCT GGCGGGGCT TTTCCGTTGGGCAAG TERM 1873 2282700 - 2282682 - f 84 -17.4 -2.72471 | opp_overlap 2282682 2282695, overlap 2282681 CGCGTATCAGACAAG GCCCCGCC CCT GGCGGGGC TTTTCCGTTGGGCAA TERM 1874 2282682 - 2282700 + F 100 -17.4 -4.27316 | opp_overlap 2282681 2282682, overlap 2282695 CGCGTATCAGACAAG GCCCCGCC CCT GGCGGGGC TTTTCCGTTGGGCAA TERM 1875 2284225 - 2284185 - g 71 -11 -3.59979 | opp_overlap 2284206 CTGCTGTACGGCAAA CCCTCCAGCACCGAGGCG GACCT CGCCGCAGCGCTGCACGG CGCCCGCGCGGACGA RALTA_A2157 2282808 - 2284637 + | putative ABC transporter, ATP-binding and membrane component parC 2287044 - 2284702 - | DNA topoisomerase IV, subunit A TERM 1876 2287052 - 2287106 + r 83 -16.3 -2.96249 | opp_overlap 2287055 2287058, overlap 2287051 2287055 2287059 2287060 2287076 TGTTCCATGGATAGG CAAGGATTCGGCGCGCCGCGCGTCG GACCA CGACGGCCGGCGCACCGGTTGCTTG TGATTCTTGGTGCCG TERM 1877 2287103 - 2287055 - R 70 -12.2 -3.1355 | opp_overlap 2287052 2287051 2287055 2287059 2287060 2287076, overlap 2287058 TCCATGGATAGGCAA GGATTCGGCGCGCCGCGCGTCG GACCA CGACGGCCGGCGCACCGGTTGC TTGTGATTCTTGGTG TERM 1878 2287055 - 2287103 + r 75 -12.2 -3.6216 | opp_overlap 2287055 2287058, overlap 2287052 2287051 2287059 2287060 2287076 TCCATGGATAGGCAA GGATTCGGCGCGCCGCGCGTCG GACCA CGACGGCCGGCGCACCGGTTGC TTGTGATTCTTGGTG TERM 1879 2287059 - 2287099 + r 89 -16 -3.51694 | opp_overlap 2287058 2287055, overlap 2287055 2287052 2287051 2287060 2287076 TGGATAGGCAAGGAT TCGGCGCGCCGCGCGTCG GACCA CGACGGCCGGCGCACCGG TTGCTTGTGATTCTT TERM 1880 2287060 - 2287098 + r 84 -17.3 -2.69932 | opp_overlap 2287058 2287055, overlap 2287059 2287055 2287052 2287051 2287076 GGATAGGCAAGGATT CGGCGCGCCGCGCGTCG GACCA CGACGGCCGGCGCACCG GTTGCTTGTGATTCT RALTA_A2159 2287914 - 2287123 - | putative lytic TRANSGLYCOSYLASE parE 2290071 - 2288080 - | DNA topoisomerase IV, subunit B TERM 1881 2290231 - 2290187 - H 77 -4 -4.84017 | opp_overlap 2290193 2290194, overlap 2290188 AATCCCGCAGAAAAA GCGCGCCTGCCCCGC-GGCCCG GGC CGGTCCGGCTTGCCGGGC-CGC CGGCACTTTTTGCCG TERM 1882 2290193 - 2290237 + H 78 -7 -4.56597 | gap 2, opp_overlap 2290188 2290187, overlap 2290194 GCAGAAAAAGCGCGC CTGCCCCGCGGCCCGGGCCGGT CCG GCTTG-CCGGGCCGCCGG-CAC TTTTTGCCGGGGCGC RALTA_A2161 2290418 - 2291629 + | putative transporter; Major facilitator superfamily (MFS) RALTA_A2162 2291629 - 2291769 + | conserved hypothetical protein; putative exported protein uup 2293732 - 2291798 - | fused ATP-binding subunit of ABC superfamily protein involved in precise excision of transposons TERM 1883 2293869 - 2293843 - H 83 -4.9 -5.00616 | overlap 2293846 CGGCCGGGCAAAAAA GAAGGGCCCGC GCACT GCGGGCCCAAG AGTCTCTCCTCGGTG TERM 1884 2293866 - 2293846 - H 100 -15.4 -4.61482 | overlap 2293843 CCGGGCAAAAAAGAA GGGCCCGC GCACT GCGGGCCC AAGAGTCTCTCCTCG RALTA_A2164 2294038 - 2295252 + | benzoate transport protein RALTA_A2165 2295793 - 2295275 - | hypothetical protein RALTA_A2166 2296054 - 2296386 + | putative small multidrug resistance protein (SMR family) RALTA_A2167 2297177 - 2296455 - | putative polysaccharide deacetylase RALTA_A2168 2298377 - 2297208 - | putative glycosyl transferase TERM 1885 2297425 - 2297384 - G 70 -12.9 -3.28924 | gap 1, overlap 2297385 CAGGCGCTGCCAGAA TCTGCGCCAGGCGTCGGCCC AGT GCACCGACGTC-GGCGCAGG GCATCACCCATCCGT TERM 1886 2297424 - 2297385 - G 73 -16.4 -2.57211 | gap 1, overlap 2297384 AGGCGCTGCCAGAAT CTGCGCCAGGCGTCGGCCC AGT GCACCGACGTC-GGCGCAG GGCATCACCCATCCG TERM 1887 2298606 - 2298627 + r 86 -7.2 -4.77165 | overlap 2298603 CCGCTCTCGTTGACG GCCCGCTG GGTGGG CAGCTGGC TTTTCTTATCAAGCG RALTA_A2169 2299094 - 2298816 - | hypothetical protein TERM 1888 2298935 - 2298911 - G 83 -12.7 -4.05788 | overlap 2298912 GCTGGCCAAAGGAAA TGCGCCGGCCG ATA CGGCCGTCGCG CGTGTGGACGATCAG TERM 1889 2298934 - 2298912 - G 78 -16.2 -3.03151 | overlap 2298911 CTGGCCAAAGGAAAT GCGCCGGCCG ATA CGGCCGTCGC GCGTGTGGACGATCA RALTA_A2170 2299715 - 2300008 + | hypothetical protein TERM 1890 2300218 - 2300251 + G 82 -15.3 -3.53012 | opp_overlap 2300209 AGGAATTGTGGGCCG TCGCCGACGGCATGG GCGG CCATGCCGTGGGGGA TTTCGCCAGCCAGGC TERM 1891 2300574 - 2300522 - g 75 -16.9 -2.86271 | overlap 2300520 2300519 GCGCGATCACAACCA GGTCGAGCGCCTGCTCGCGCGCG GCCTGAT CACGCCGGAGCAGGCGCGCCACC ATCCCGCGCAGAACA RALTA_A2171 2300103 - 2300879 + | putative serine/threonine protein phosphatase, P2C family RALTA_A2172 2302218 - 2300893 - | putative sigma54-interacting protein RALTA_A2173 2305328 - 2302215 - | Putative Cyclic nucleotide-binding, ABC transporter and Peptidase C39, bacteriocin processing RALTA_A2174 2306061 - 2305309 - | putative Peptidylprolyl isomerase RALTA_A2175 2307522 - 2306140 - | putative Type I Secretion protein, HlyD type RALTA_A2176 2310218 - 2307519 - | putative Forkhead-associated protein TERM 1892 2309856 - 2309895 + g 71 -9.8 -3.71848 | gap 1, overlap 2309867 ATCGCTGAGCTGCGC CGGCTGGCGCGCCA-CGGC CGC GCCGTTCACGCGCGTGCCG TTCTTGCTGCCGAGG TERM 1893 2309962 - 2309945 - G 72 -3.3 -4.57073 | gap 1, opp_overlap 2309953, overlap 2309946 CATGCTCCGCAAAAA TGCG-CGC ATG GCGCCGCG ACAGCGGCGCGGCCA RALTA_A2177 2311920 - 2310457 - | putative Outer membrane efflux protein TERM 1894 2311487 - 2311526 + g 95 -10.1 -5.02074 | gap 2, opp_overlap 2311502 TCCCAGTTCAGCTGG GCGCCGGCGCTATAAGTCC ATGT GGACTTCT-GC-CCGGTGC TTTTTTCGAAGCTCG TERM 1895 2311938 - 2311994 + r 100 -21.7 -3.13593 | gap 3, overlap 2311938 2311941 TGTCTTCCTGCGTGC GACGGCGGCGGCC-GGCGGGGCT-GCAA CGGT TCGCCGGTCCCGCCTGGCCGCCGC-GTC TGTCTGTATTGTGGT TERM 1896 2312082 - 2312057 - R 100 -23.3 -4.83169 | ACGGGGTCAGAAAAA GCGCCGCGGGG ACGC CCCCGCGGCGC AGCGCCATCTCAACC RALTA_A2178 2312373 - 2312104 - | hypothetical protein TERM 1897 2312281 - 2312320 + g 70 -12.1 -3.26319 | overlap 2312318 ATACACCGCGGCGAA GGGCAGGTACGTCGTGC CGCCGC GCACGGCGTGCATGCGC TTGCTGTCAAGGGTT RALTA_A2179 2312697 - 2312428 - | hypothetical protein RALTA_A2180 2313441 - 2313013 - | hypothetical protein RALTA_A2181 2313926 - 2313501 - | conserved hypothetical protein; putative exported protein RALTA_A2182 2314262 - 2315446 + | conserved hypothetical protein (DUF323/COG1262); putative exported protein TERM 1898 2315488 - 2315447 - T 79 -13.6 -3.43071 | gap 1, overlap 2315448 2315470 CGGGACATGAAGTAA GCGTGGCGCGGCCGGCGCG AAAGG CAAGCCGGCCA-GCCCCGC GAGAGGGTAGTCGCG RALTA_A2183 2317612 - 2315507 - | Serine/threonine protein kinase TERM 1899 2317881 - 2317939 + H 72 -11.9 -3.35679 | gap 3 ATGAATTTCTCATGT TTTCAGGGACT-TGCGCGGGCGCTGCGG GCGTGG CCGCGG-GCCTG-GCACAGTCCCTGCGA TTGTCCCTCCCGAGC RALTA_A2184 2318018 - 2318287 + | hypothetical protein RALTA_A2185 2318343 - 2318612 + | hypothetical protein RALTA_A2186 2318695 - 2318967 + | hypothetical protein TERM 1900 2319012 - 2318974 - f 75 -12.3 -3.65351 | gap 1, opp_overlap 2318978, overlap 2318975 2318978 GCAGTCTGAGCGAAA CGC-AGGCGGGCCCGCGC AGGA GCGTGGGGCCGCCTTGCC TATACTGAAGCGGTC TERM 1901 2319011 - 2318975 - f 78 -15.8 -2.78996 | gap 1, opp_overlap 2318978, overlap 2318974 2318978 CAGTCTGAGCGAAAC GC-AGGCGGGCCCGCGC AGGA GCGTGGGGCCGCCTTGC CTATACTGAAGCGGT TERM 1902 2319007 - 2318978 - f 80 -16.3 -2.66272 | opp_overlap 2318978, overlap 2318975 2318974 TCTGAGCGAAACGCA GGCGGGCCCGCGC AGGA GCGTGGGGCCGCC TTGCCTATACTGAAG TERM 1903 2318978 - 2319007 + F 91 -18.5 -3.14468 | opp_overlap 2318975 2318974 2318978 TCTGAGCGAAACGCA GGCGGGCCCGCGC AGGA GCGTGGGGCCGCC TTGCCTATACTGAAG TERM 1904 2319053 - 2319022 - f 93 -18.6 -3.12351 | CTTGCCTATACTGAA GCGGTCCCGCGGCC GCAG GGCCGCGGCCCCGC TTGACCGGAGACCGC RALTA_A2187 2319070 - 2319312 + | hypothetical protein TERM 1905 2319376 - 2319318 - f 91 -21.1 -2.52896 | gap 1, opp_overlap 2319338, overlap 2319338 CGAGGGCTGAAGCGA GCGGCCCGCCCAAATGAAAAGCCCGCCA TCGC TGGCGGGCTTTGGATGCGGACGGGCC-C GGACCACCTCGGTCA TERM 1906 2319338 - 2319357 + F 85 -15 -3.64703 | opp_overlap 2319318 2319338 CCGCCCAAATGAAAA GCCCGCCA TCGC TGGCGGGC TTTGGATGCGGACGG TERM 1907 2319357 - 2319338 - f 100 -15 -4.54727 | opp_overlap 2319338, overlap 2319318 CCGCCCAAATGAAAA GCCCGCCA TCGC TGGCGGGC TTTGGATGCGGACGG TERM 1908 2321692 - 2321742 + G 79 -18.8 -2.52464 | opp_overlap 2321665, overlap 2321722 CGGCAACCGTGAAGG CGGCTACCGTGGCCAGGGCGGCGG CTA CCGCGGCGCCGGCGACGGTGCCCG TGGCTTCGGCAACCG RALTA_A2189 2320115 - 2321989 + | modular protein:DEAD/DEAH box helicase (N-terminal); ATP-DEPENDENT RNA HELICASE (C-terminal)(rhlE-like) TERM 1909 2322028 - 2322049 + T 100 -15.9 -5.64274 | opp_overlap 2322028 TGCCGCATGACAAAA CAGGGCACC CGCG GGTGCCCTG TTTTTTTCTGGCTGG TERM 1910 2322049 - 2322028 - T 100 -15.9 -4.46212 | opp_overlap 2322028 TGCCGCATGACAAAA CAGGGCACC CGCG GGTGCCCTG TTTTTTTCTGGCTGG RALTA_A2190 2323314 - 2322073 - | conserved hypothetical protein (DUF323/COG1262) TERM 1911 2322267 - 2322245 - G 76 -7.6 -4.36914 | overlap 2322246 GGCGCGGCGACAAAA CCGCTGTACG GCT CGTACGGCGT CGCCGTCCACTCGCG RALTA_A2191 2324565 - 2323447 - | hypothetical protein TERM 1912 2323957 - 2323939 - G 77 -11.7 -3.88232 | GCCCGGATAGAAGAA CAGGCGC CTGCC GCGCCTG ACCTTGGCCGGCAGG TERM 1913 2324318 - 2324360 + g 78 -16.3 -3.08073 | opp_overlap 2324297 2324296 2324340 CTGATGGCCGCCTGC GCGGCGCGCAGGCCCGA-CAG TAC CTGGTCGCGCA-GCGCGCCGC TGTCTTCGCGGTACT TERM 1914 2324968 - 2325017 + H 86 -15.8 -3.55563 | gap 1, opp_overlap 2324962 2325014 2325016, overlap 2324951 GGGACAGCAGTCCCC GGTTGTGCT-GACTACCGGCGCG CATAC CGCGCCAGTGGTCGAGCAAGACC TTTGCAACCTGGACT RALTA_A2193 2325127 - 2325834 + | putative Integral membrane protein, TerC family TERM 1915 2325875 - 2325912 + F 100 -18.6 -3.60098 | gap 2, opp_overlap 2325835 2325880 2325881 2325883, overlap 2325881 TGCCCTGGCCCTGCC GCAAAGGACGGGCCGCCC GGAG GGGCGGCCCGTC-TT-GC TTTAAAATGCCAGCT TERM 1916 2325909 - 2325880 - f 100 -20.7 -3.53012 | opp_overlap 2325875 2325881, overlap 2325835 2325881 2325883 TGGCCCTGCCGCAAA GGACGGGCCGCCC GGAG GGGCGGCCCGTCT TGCTTTAAAATGCCA TERM 1917 2325881 - 2325908 + F 100 -24.2 -3.53031 | opp_overlap 2325835 2325880 2325881 2325883, overlap 2325875 GGCCCTGCCGCAAAG GACGGGCCGCCC GGAG GGGCGGCCCGTC TTGCTTTAAAATGCC TERM 1918 2325908 - 2325881 - f 100 -24.2 -2.71712 | opp_overlap 2325881 2325875, overlap 2325835 2325880 2325883 GGCCCTGCCGCAAAG GACGGGCCGCCC GGAG GGGCGGCCCGTC TTGCTTTAAAATGCC TERM 1919 2325906 - 2325883 - f 93 -21 -2.90496 | opp_overlap 2325881 2325875, overlap 2325835 2325881 2325880 CCCTGCCGCAAAGGA CGGGCCGCCC GGAG GGGCGGCCCG TCTTGCTTTAAAATG thyA 2325919 - 2326770 + | thymidylate synthetase folA 2326767 - 2327267 + | dihydrofolate reductase type I TERM 1920 2327289 - 2327304 + T 100 -11.8 -5.60993 | opp_overlap 2327289 CATGAAATAAAAAAA GCGGGC TTTG GCCCGC TTTTTTTCTGGGAGC TERM 1921 2327304 - 2327289 - T 100 -11.8 -5.99154 | opp_overlap 2327289 CATGAAATAAAAAAA GCGGGC TTTG GCCCGC TTTTTTTCTGGGAGC pmbA 2328696 - 2327329 - | peptidase, for maturation of Microcin B17 and degradation of CcdA TERM 1922 2329261 - 2329241 - g 81 -3.8 -4.8622 | opp_overlap 2329241 2329228, overlap 2329243 GCGCGCAAGGAAAAA GAGCTGGG CAAGC CCCCGCGC TATTTCCGCGAGCTG TERM 1923 2329357 - 2329342 - g 72 -4.6 -4.49556 | CGCCGAGGAAACAAA CCCCGA CCAT CCGGAG CCCGAGGCATGACCC RALTA_A2197 2328746 - 2329369 + | conserved hypothetical protein, DUF615 mogA 2329366 - 2330004 + | molybdochetalase, Molybdenum cofactor (Moco) biosynthesis RALTA_A2199 2330950 - 2330051 - | putative transporter, Auxin Efflux Carrier (AEC) family orn 2331649 - 2331014 - | oligoribonuclease TERM 1924 2331739 - 2331766 + H 73 -11.3 -3.57561 | gap 2 CATATCCGTCCGGGA CGGCTGCCTGCGC ACCA GCGC-GGC-GCCG TTTCCGGAATTCCCG TERM 1925 2331933 - 2331983 + G 82 -14.7 -3.53224 | gap 1, opp_overlap 2331920 AAGCTGTGGCTGGCC GCGCGCCAGGTGCGCCATGTCG CGCAGCAC CGCCATGCCGTGCC-GGCGCGC TTTGCCGACACCATC RALTA_A2201 2331870 - 2333117 + | putative metalloprotease; endopeptidase M48, Ste24p family rsgA 2333114 - 2334085 + | ribosome small subunit-dependent GTPase A TERM 1926 2334113 - 2334091 - f 80 -14.8 -3.17075 | opp_overlap 2334091 GCCGTGGTAAGGTAA GCGCACCTGG GTT CCCGGTGCGC TGTCATGAAACTGCT TERM 1927 2334091 - 2334113 + F 75 -14.8 -2.79302 | opp_overlap 2334091 GCCGTGGTAAGGTAA GCGCACCTGG GTT CCCGGTGCGC TGTCATGAAACTGCT RALTA_A2203 2334118 - 2334423 + | hypothetical protein RALTA_A2204 2335438 - 2334434 - | putative COBALAMIN BIOSYNTHESIS TRANSMEMBRANE PROTEIN, cobD/cbiB family TERM 1928 2335610 - 2335581 - R 100 -17.9 -4.09685 | overlap 2335587 GTGCACCGCCCAAAA GCAAAAGCCCGCC ATGG GGCGGGCTCTCGC ATCGGGCCGTGGAAC TERM 1929 2335604 - 2335587 - R 100 -14.1 -4.67038 | overlap 2335581 CGCCCAAAAGCAAAA GCCCGCC ATGG GGCGGGC TCTCGCATCGGGCCG RALTA_A2205 2336328 - 2335630 - | putative transcription cofactor, metal binding Pirin domain TERM 1930 2336142 - 2336191 + g 74 -14.2 -3.27029 | overlap 2336140 CGTAGCTGATGATTT CCATGTCGCGGTGGCCATGGGT GCCAAA GCCCATGCCCGGCGCGACGCGG TCTTCATTGATCACG RALTA_A2206 2336406 - 2337401 + | putative transcriptional regulator, LysR family RALTA_A2207 2337430 - 2338338 + | putative glutamyl t-RNA synthetase with nucleotidylyl transferase domain TERM 1931 2338374 - 2338355 - T 100 -15 -4.96501 | opp_overlap 2338355 CGCCACAAAAACAAA TGGCCCGC GCAG GCGGGCCA TTCATTGGAACCACG TERM 1932 2338355 - 2338374 + T 82 -15 -3.33696 | opp_overlap 2338355 CGCCACAAAAACAAA TGGCCCGC GCAG GCGGGCCA TTCATTGGAACCACG rhlE2 2339931 - 2338396 - | DEAD box ATP-dependent RNA helicase with P-loop hydrolase domain TERM 1933 2340117 - 2340102 - H 72 -11.8 -3.28712 | opp_overlap 2340092 2340085, overlap 2340065 CGGCGGCCGCGACAA CCGCCG CCAG CGGCGG ACCGGCGCGCGGCAT TERM 1934 2340169 - 2340201 + H 81 -15.6 -3.05844 | gap 2, opp_overlap 2340163 GCCGAGCAAGATGCC GGCGGCGCGG-C-GGC CCT GCCGGACCGTGCCGCC TCTTCACATCGAGAC RALTA_A2209 2340221 - 2340367 + | hypothetical protein RALTA_A2210 2341414 - 2340416 - | conserved hypothetical protein, UPF0065 RALTA_A2211 2343217 - 2341589 - | putative CoA TRANSFERASE; putative exported protein TERM 1935 2343508 - 2343459 - g 72 -13.4 -3.15579 | gap 1 GGAATCGCTGAGCAA GGGCCTGGCGCTGCTGCGCCTGC TGGGC GCCGGCGCGG-AGCGCCTGACCA TGCAGGAGGTTGCCG RALTA_A2212 2343406 - 2344185 + | putative transcriptional regulator, IclR family TERM 1936 2344237 - 2344210 - f 100 -14.9 -4.42386 | gap 1 GGCCCATGTAGAAAA GCCCCGCGTGCC GGGGA GGCA-GCGGGGC TCAAGCGGTAGCGGG RALTA_A2213 2344560 - 2344667 + | hypothetical protein TERM 1937 2344671 - 2344703 + T 72 -14 -2.78018 | opp_overlap 2344672, overlap 2344668 CACCTGATCTGAAGC ACGGGTCCGGCGCC CGGCC GGCGCCGGGCCGGA TCATTCGTCGACAAT TERM 1938 2344702 - 2344672 - T 78 -15.3 -2.73483 | opp_overlap 2344671 2344668 ACCTGATCTGAAGCA CGGGTCCGGCGCC CGGCC GGCGCCGGGCCGG ATCATTCGTCGACAA RALTA_A2214 2345057 - 2344704 - | conserved hypothetical protein, DUF1428 RALTA_A2215 2345273 - 2345467 + | putative lipoprotein plcN1 2345464 - 2347749 + | PHOSPHOLIPASE C (PHOSPHATIDYLCHOLINE CHOLINEPHOSPHOHYDROLASE) RALTA_A2217 2348357 - 2347779 - | hypothetical protein phaZ5 2349463 - 2348408 - | Poly (3-hydroxybutyrate) depolymerase RALTA_A2219 2349765 - 2349622 - | putative lipoprotein TERM 1939 2349708 - 2349688 - G 70 -12.5 -3.37245 | opp_overlap 2349684 GCACTGGAACAGCAA GGCGCAGAC ATT GCCCGCGCC CGCCTTCTGCAGCAG RALTA_A2220 2350064 - 2349789 - | conserved hypothetical protein; HTH luxR domain TERM 1940 2349848 - 2349863 + g 82 -3.2 -5.00616 | overlap 2349847 GAGAATGGATTATCC GCGG CTGCCGTC CCGC TTTTTTAAACAGCCC RALTA_ACDS2350125R 2350519 - 2350124 - | hypothetical protein TERM 1941 2350321 - 2350331 + g 86 -3.2 -5.19879 | overlap 2350328 2350329 CAGCAGAGGCGAATT CTAG GTG CTGG TTTTTATATTTAAAA TERM 1942 2350761 - 2350810 + G 85 -17.2 -3.17075 | GCACTATGTGAACCC GGTGATCGGCCATGCG-GCCGGCG CCGC CGCCGGCGCGC-TGGCCCAGCATC TTCCGTTCCCCGACC RALTA_A2221 2350573 - 2351328 + | hypothetical protein TERM 1943 2351408 - 2351385 - f 70 -11.6 -3.15544 | CTTCATGCGCATGAA CGGGGACGCC AGAC GGCGCCCCCC CGCTGGCCGGCGCCA TERM 1944 2351541 - 2351501 - g 90 -12.4 -4.42721 | gap 1, overlap 2351502 2351503 GAACGAGACAAGAAA GGCGAGGCCGCGCGCGCCG GCGA CGAC-CGTGCCGCCGCGCC CGGCGCGGGCAGCCG TERM 1945 2351559 - 2351502 - g 80 -16.9 -3.24548 | overlap 2351501 2351503 AACGAGACAAGAAAG GCGAGGCCGCGCGCGCC-GGCGACGAC CGTGCC GCCG-CGCCCGGCGCGGGCAGCCGCGA GGCCGTGGCGCTGGA TERM 1946 2351558 - 2351503 - g 82 -20.4 -2.53644 | overlap 2351501 2351502 ACGAGACAAGAAAGG CGAGGCCGCGCGCGCC-GGCGACGAC CGTGCC GCCG-CGCCCGGCGCGGGCAGCCGCG AGGCCGTGGCGCTGG TERM 1947 2353042 - 2353058 + G 74 -15.1 -3.04792 | GGGTCCGCGCGGACC GCGCCGC GTC GCGGCGC TGTTCCAGCTGATCC RALTA_A2222 2351447 - 2353177 + | putative Subtilisin, serine endopeptidase TERM 1948 2353205 - 2353230 + F 72 -11.7 -3.25652 | opp_overlap 2353204 2353206 2353207, overlap 2353204 2353206 GCCGCGCGGGCAAAC ACGCGGCCCGG GCCA CCGGGCCGCCC TCTTCCTTCCATAGA TERM 1949 2353206 - 2353229 + F 77 -15.2 -2.5507 | opp_overlap 2353206 2353204 2353207, overlap 2353205 2353204 CCGCGCGGGCAAACA CGCGGCCCGG GCCA CCGGGCCGCC CTCTTCCTTCCATAG TERM 1950 2353229 - 2353206 - f 84 -15.2 -3.34398 | opp_overlap 2353205 2353204 2353206, overlap 2353204 2353207 CCGCGCGGGCAAACA CGCGGCCCGG GCCA CCGGGCCGCC CTCTTCCTTCCATAG TERM 1951 2353228 - 2353207 - f 87 -18.7 -2.60496 | opp_overlap 2353206 2353205 2353204, overlap 2353206 2353204 CGCGCGGGCAAACAC GCGGCCCGG GCCA CCGGGCCGC CCTCTTCCTTCCATA RALTA_A2223 2353365 - 2354111 + | hypothetical protein RALTA_A2224 2354116 - 2354946 + | hypothetical protein RALTA_A2225 2354997 - 2355536 + | putative chitinase TERM 1952 2355588 - 2355565 - T 100 -16.8 -5.95539 | opp_overlap 2355565 CGGCAAACAAAAAAA GGGGTTACGG CGTA CCGTAACCCC TTTTTCACTGCATTG TERM 1953 2355565 - 2355588 + T 100 -16.8 -4.68424 | opp_overlap 2355565 CGGCAAACAAAAAAA GGGGTTACGG CGTA CCGTAACCCC TTTTTCACTGCATTG rpoD1 2357742 - 2355691 - | RNA POLYMERASE SIGMA D (SIGMA-70) FACTOR TRANSCRIPTION REGULATOR PROTEIN TERM 1954 2358457 - 2358489 + r 80 -16.3 -2.64155 | opp_overlap 2358476, overlap 2358454 2358453 TGAAGGCCAGGGCGC CCGCCGGCGCC TCAGCCAAGTT GGCGCCGGCGG TGGATTTCGCCCACC dnaG 2360279 - 2358468 - | DNA PRIMASE TERM 1955 2360301 - 2360323 + r 86 -8.3 -4.60041 | overlap 2360302 GACCGTCCTGAGGCT TGGCCGTCC CCGGC GGGCGGCCC TTTTTAGGAATGCGT TERM 1956 2360302 - 2360322 + r 72 -11.8 -3.35542 | overlap 2360301 ACCGTCCTGAGGCTT GGCCGTCC CCGGC GGGCGGCC CTTTTTAGGAATGCG RALTA_A2230 2360929 - 2360480 - | conserved hypothetical protein, COG1610 TERM 1957 2361031 - 2361007 - R 93 -9.1 -4.78149 | CCCACAACGCAAAAA CCCGCCGAGCC TGC GCCACAGCGGG TGATAGGCAAGCGCG rpsU1 2361267 - 2361055 - | 30S ribosomal subunit protein S21 TERM 1958 2361178 - 2361190 + g 86 -6.2 -4.88736 | opp_overlap 2361160 GCGGGCCCGTAGCTC CGGG AGCAG CCCG TTTTTCTCGATGGTG TERM 1959 2361378 - 2361347 - R 71 -11.5 -3.53444 | CGACCCGGCGCGAAA GTGGCGCGCAATG GGCCCG CAATGCGCGCCTC AGGCAGCACATTCAG RALTA_A2232 2362663 - 2361404 - | putative oxidoreductase with FAD/NAD(P)-binding domain; putative exported protein TERM 1960 2362738 - 2362726 - H 81 -10.5 -4.19258 | opp_overlap 2362726 AGATTGTAGCGAAAA GCGCG CCG CGCGC CGCTGTGCTACCCTG TERM 1961 2363428 - 2363441 + G 83 -4.5 -4.8622 | CGGCCGATGCTGCAT TCGGG CAAC CTCGA TTTTTCCTTCGCCGG ygjD 2362819 - 2363853 + | O-sialoglycoprotein endopeptidase, with actin-like ATPase domain TERM 1962 2363916 - 2363898 - T 100 -10.3 -5.7946 | opp_overlap 2363898 CCGGCAACAAAAAAA GCCACCA AATTA TGGTGGC TTTTTCCATGACCGC TERM 1963 2363898 - 2363916 + T 95 -10.3 -4.65895 | opp_overlap 2363898 CCGGCAACAAAAAAA GCCACCA AATTA TGGTGGC TTTTTCCATGACCGC RALTA_A2234 2364746 - 2363943 - | conserved hypothetical protein, DUF198 COG1469 dxs 2366873 - 2364957 - | 1-deoxy-D-xylulose 5-phosphate synthase; flavoprotein, thiamin-binding TERM 1964 2365367 - 2365338 - G 76 -13.5 -3.4052 | gap 1 GCCGAACGCAAGGAA GCCGACGCG-GTGC CCG GCGCGCGCGCCGGC CTCGCGGCGCACCAC ispA 2367783 - 2366899 - | geranyltranstransferase (=farnesyldiphosphate synthase) xseB 2368112 - 2367780 - | Exonuclease VII, small subunit TERM 1965 2367948 - 2367991 + g 71 -10 -3.68351 | CACCAGCTCGGCGCC GCGGCGGTATGCCGCCAGCG AGGC CTCGAGCGGCAGCTCGCCGC TTTCCATGCTGGCCA TERM 1966 2368294 - 2368309 + H 74 -4.6 -4.65895 | overlap 2368296 GTACGGCACCCCGAT GACGAC CCGG GTCGAC TTTTTCGCTAAAAAG TERM 1967 2369396 - 2369378 - g 71 -10.3 -3.73953 | opp_overlap 2369377 ACTACCCCGAGGAAA TCGCGCT GTTCG AGCGCGA GTTCGTCGAGGCCGA RALTA_A2238 2368444 - 2369592 + | putative Choline monooxygenase, Rieske (2Fe-2S) domain TERM 1968 2369616 - 2369645 + F 79 -15.1 -2.8372 | opp_overlap 2369621, overlap 2369621 GCGCACAACGCAACC TGAAACGGACCGC CACG GCGGTCCGTTTTG CTTTGGTGGGCGATG TERM 1969 2369621 - 2369640 + F 100 -15 -4.58773 | opp_overlap 2369621, overlap 2369616 CAACGCAACCTGAAA CGGACCGC CACG GCGGTCCG TTTTGCTTTGGTGGG TERM 1970 2369640 - 2369621 - f 85 -15 -3.67864 | opp_overlap 2369621 2369616 CAACGCAACCTGAAA CGGACCGC CACG GCGGTCCG TTTTGCTTTGGTGGG RALTA_A2239 2369768 - 2370691 + | conserved hypothetical protein, DUF6; putative TRANSMEMBRANE PROTEIN TERM 1971 2370947 - 2370931 - g 72 -9.3 -4.07568 | overlap 2370914 2370911 2370932 2370941 TGTCCGGCCCGAAAA CCGGCCG AAA CGGCCGC CACCCCCTGCCGGAT sseA 2370747 - 2371604 + | 3-mercaptopyruvate sulfurtransferase TERM 1972 2371620 - 2371656 + T 74 -13.5 -2.93348 | overlap 2371621 2371653 GCCGGCTAGTGTGAC GCGGCCACGGGCGCGGC GTG GCCGTGCCCGCCGTGGC TGTGCTGTTCGTGCA TERM 1973 2371621 - 2371663 + T 73 -12.7 -3.14463 | gap 2, overlap 2371620 2371653 CCGGCTAGTGTGACG CGGCCACGGGCGCGGCGTGGC CGT GCC-CGCCGTGGCTGTG-CTG TTCGTGCACGCCATT RALTA_A2241 2372491 - 2371610 - | putative divalent heavy-metal cations transporter RALTA_A2242 2373495 - 2372617 - | putative CARBOXYMETHYLENEBUTENOLIDASE (DIENELACTONE HYDROLASE) TERM 1974 2373599 - 2373572 - R 71 -8.2 -3.83188 | overlap 2373570 2373573 GACATGGAGAAAACA TGGCGGCGCAGG CCCG CCGGCGCCCCCC ACCCGGAAGCGGGGG ndh 2374954 - 2373629 - | membrane bound respiratory NADH dehydrogenase 2; cupric reductase polA 2377966 - 2375147 - | DNA polymerase A; 5'->3' exonuclease ; 3'->5' polymerase ; 3'->5' exonuclease TERM 1975 2375424 - 2375447 + g 70 -12.4 -3.25823 | gap 1, overlap 2375425 GCGCGCTCGGCGGCC TGGCGGC-GCG GGC CGCTGCCGCCG TTGATATCCGGCAGC TERM 1976 2377039 - 2377097 + g 74 -16.5 -2.73243 | gap 1, opp_overlap 2377033, overlap 2377059 2377065 CATCGAACAGTCCGC CCTGCGCGGGCGCGCTCGTCGCGGCACG GGCG CGGGCCTGGGCGCGCGCGTCGG-GCAGG CTTTCGCCGGTGGCT TERM 1977 2378114 - 2378093 - g 85 -18.7 -3.01712 | opp_overlap 2378093 GGCTGCCTCCGAACA CGCCGCGGC CATT GCCGCGGCG GCCGATGCCGCCGCC RALTA_A2245 2377971 - 2378918 + | conserved hypothetical protein; putative exported protein RALTA_A2246 2379150 - 2379584 + | conserved hypothetical protein; putative TRANSMEMBRANE PROTEIN; putative exported protein TERM 1978 2379619 - 2379662 + F 95 -10 -4.431 | opp_overlap 2379613, overlap 2379620 2379650 GGCCGCAAACGCCAG GCCGCGCCGGCCCTCCGGCA GTCA TGCCGCGGCGGCGGCCCGGA TTTTGTCCGTAACTG TERM 1979 2379620 - 2379661 + F 77 -13.5 -3.25378 | opp_overlap 2379613, overlap 2379619 2379650 GCCGCAAACGCCAGG CCGCGCCGGCCCTCCGGCA GTCA TGCCGCGGCGGCGGCCCGG ATTTTGTCCGTAACT TERM 1980 2380327 - 2380372 + G 90 -13.4 -4.05446 | gap 2, opp_overlap 2380335 2380337 GCGACAACGCGCTGT TCGAGGAAGACGCCAGCGGCCG CCAC CGGCTG--GGCGGCTTCTTCGA TTTCTACTTCGCCGG thrB 2379714 - 2380718 + | HOMOSERINE KINASE PROTEIN RALTA_A2248 2380724 - 2381530 + | conserved hypothetical protein; putative TRANSMEMBRANE PROTEIN TERM 1981 2381552 - 2381536 - T 77 -2.1 -5.00616 | opp_overlap 2381536 2381539, overlap 2381538 GGGCGTCTGAAAAAA CGCTCGC TAC GCGATGG TGTGCTCCCTCTCCC uvrD 2383968 - 2381620 - | DNA-dependent ATPase I and helicase II TERM 1982 2382314 - 2382283 - G 72 -14.4 -3.14132 | opp_overlap 2382312 GGCGTGGGTCAGGAA CGCTACCAGCGGCG TCAT CACCACCGGCAGCG CCTCGGGGTCGAGCA TERM 1983 2386028 - 2386008 - g 95 -9.7 -4.93316 | GAAGAAGACGAAAAA GGAATTCCC CGA GGGCATTCC GGCCTTTGGCGCCGA valS 2384224 - 2387091 + | valine tRNA synthetase galU1 2387200 - 2388120 + | glucose-1-phosphate uridylyltransferase TERM 1984 2388142 - 2388171 + T 90 -13.7 -4.08216 | opp_overlap 2388143 2388149, overlap 2388143 2388149 CCGGACGGGTTACGA AGAAAAAGCCGCT TTCG AGCGGCTTTTTCC TTTTCGGACGGATGA TERM 1985 2388170 - 2388143 - T 89 -17.2 -3.14931 | opp_overlap 2388142 2388143 2388149, overlap 2388149 CGGACGGGTTACGAA GAAAAAGCCGCT TTCG AGCGGCTTTTTC CTTTTCGGACGGATG TERM 1986 2388143 - 2388170 + T 88 -17.2 -3.04715 | opp_overlap 2388143 2388149, overlap 2388142 2388149 CGGACGGGTTACGAA GAAAAAGCCGCT TTCG AGCGGCTTTTTC CTTTTCGGACGGATG TERM 1987 2388164 - 2388149 - T 100 -10.4 -5.1356 | opp_overlap 2388143 2388142 2388149, overlap 2388143 GGTTACGAAGAAAAA GCCGCT TTCG AGCGGC TTTTTCCTTTTCGGA TERM 1988 2388149 - 2388164 + T 100 -10.4 -5.0925 | opp_overlap 2388149 2388143, overlap 2388143 2388142 GGTTACGAAGAAAAA GCCGCT TTCG AGCGGC TTTTTCCTTTTCGGA TERM 1989 2388213 - 2388188 - T 73 -13.3 -3.18264 | gap 1, overlap 2388189 TTTCGGACGGATGAA CGCTCCCTGCCC CGC GGGC-GGGAACG GGAGCAATCCATCAG RALTA_A2252 2388452 - 2388225 - | putative regulator, SirA-like domain RALTA_A2253 2389088 - 2388504 - | putative hydrolase, NUDIX domain ltaA 2390168 - 2389137 - | LOW SPECIFICITY L-THREONINE ALDOLASE RALTA_A2255 2390385 - 2390197 - | putative TAUTOMERASE (4-OXALOCROTONATE TAUTOMERASE) RALTA_A2256 2391215 - 2390442 - | putative ALDOLASE, class II family, Adducin subfamily RALTA_A2257 2392663 - 2391371 - | conserved hypothetical protein, DUF1228; putative membrane protein TERM 1990 2391527 - 2391488 - G 78 -14.3 -3.61268 | overlap 2391489 CAGCGAACCGGCAAA GCCGCCGCTGCGCG-CCAC CAGC GCGGTCGC-CAGCGGCGGG CCGGCGATCTGGCCG TERM 1991 2391526 - 2391489 - G 78 -17.8 -2.7644 | overlap 2391488 AGCGAACCGGCAAAG CCGCCGCTGCGCG-CCAC CAGC GCGGTCGC-CAGCGGCGG GCCGGCGATCTGGCC RALTA_A2258 2392792 - 2393691 + | putative TRANSCRIPTIONal REGULATOR, LysR family RALTA_A2259 2393795 - 2395234 + | putative membrane bound peptidase; NefD homolog RALTA_A2260 2395237 - 2396001 + | conserved hypothetical protein; putative STOMATIN-LIKE TRANSMEMBRANE PROTEIN TERM 1992 2396022 - 2396078 + T 75 -14.4 -2.71731 | gap 1, opp_overlap 2396010 2396001 GGACTGCCGCACTGC CTGCGGCGGGTGA-CTCCCCTCTCCCA TAAA TGGGAGAGGGGCGCTAACCAGCGGTGG TCGTTACGCGATCAG alaS 2398714 - 2396090 - | alanyl-tRNA synthetase TERM 1993 2399159 - 2399111 - g 72 -14.4 -3.16564 | gap 1, overlap 2399081 CGCCGACGTGATCAA GGTCGAGCGCCCCGGCGCCGGCG ACGA CACCCGCACCTGGG-GCCCGCCC TGGCTCAAGGACGAA TERM 1994 2399201 - 2399175 - g 74 -13.6 -3.27298 | TGGCTCAAGGACGAA GACGGCCGCGAC ACC GCCGAGGCCGCC TACTACCTGGCCGCC RALTA_A2262 2399010 - 2400230 + | putative Formyl-CoA transferase, CaiB/BaiF family TERM 1995 2400240 - 2400272 + F 73 -11.2 -3.55622 | gap 1, opp_overlap 2400219 2400220, overlap 2400244 CTGTAAGATTCTCCT CCAGCCCGCGGCGGG CCAG CCGGCCGCGGG-TGC TTTCCGGAAGTTCAG TERM 1996 2400244 - 2400269 + F 87 -17.5 -2.90992 | opp_overlap 2400219 2400220, overlap 2400240 AAGATTCTCCTCCAG CCCGCGGCGGG CCAG CCGGCCGCGGG TGCTTTCCGGAAGTT RALTA_A2263 2400355 - 2400810 + | conserved hypothetical protein, COG3556; putative TRANSMEMBRANE PROTEIN RALTA_A2264 2400840 - 2401835 + | conserved hypothetical protein, UPF0065 cvrA 2403638 - 2401857 - | Cell volume regulation protein A homolog, putative Na:H transport protein (CPA1 family) TERM 1997 2402745 - 2402718 - G 72 -14 -3.23692 | CACCAGCATCAGGAA GGCCGCCACCGC CACC GCGGGGCCGGCC ACTTCCCAGATCCGG TERM 1998 2403768 - 2403824 + H 84 -11.2 -4.19258 | opp_overlap 2403768 CCGTTCCGGATGATA GCGCAGCGGTCCCGGGCCCCGACCCG CAAAA CGGCGTGGAGCCTGGCGCAGCGGCGC TTTTAAGTGCGCTCT RALTA_A2266 2404024 - 2404485 + | conserved hypothetical protein, DUF1468; putative TRANSMEMBRANE PROTEIN RALTA_A2267 2404499 - 2406001 + | conserved hypothetical protein; putative TRANSMEMBRANE PROTEIN TERM 1999 2406046 - 2406063 + T 100 -12.7 -5.52384 | GGCAGCAATCCTGAA GGGCACC GCAT GGTGCCC TTTTTTTCGTCCGGC RALTA_A2268 2406973 - 2406089 - | putative transcriptional Regulator, LysR family RALTA_A2269 2407133 - 2408110 + | conserved hypothetical protein, UPF0065 RALTA_A2270 2408159 - 2409784 + | GAMMA-GLUTAMYLTRANSPEPTIDASE PROTEIN TERM 2000 2409798 - 2409829 + F 89 -17.2 -3.14132 | AAGCGCCGGGCTCCC CCGCCCCTCTCCCG CAAG CGGGCGAGGGGCGC TTACTGCGAACCGCA RALTA_A2271 2409954 - 2410832 + | putative isomerase, Phenazine biosynthesis PhzC/PhzF domain TERM 2001 2411249 - 2411284 + G 87 -19.8 -3.09516 | gap 1, opp_overlap 2411260 CCGCGTCAACGGCAC CGCGCAGATCAGCGTGG ACC CCGCGCTGGTC-GCGCG TTGCGTGGTCGAGGG RALTA_A2272 2410902 - 2411519 + | putative 1 Pyridoxamine 5'-phosphate oxidase-related, FMN-binding protein RALTA_A2273 2412952 - 2411516 - | putative formyl-coenzyme A transferase, CaiB/BaiF family TERM 2002 2412042 - 2411992 - G 83 -19.7 -2.74597 | overlap 2411985 2411989 GCGACACATAGACGA TGCCCGGAC-GGGCGCGCGCCGCGG CTT CCG-GGCCCGCGCCCAGTCCGTCCA GGCCGCCGGGACGGT glnS 2413211 - 2414968 + | glutamine tRNA synthetase RALTA_A2275 2414965 - 2415210 + | conserved hypothetical protein, COG2501 RALTA_A2276 2415276 - 2415659 + | conserved hypothetical protein; putative TRANSMEMBRANE PROTEIN RALTA_A2277 2415664 - 2416251 + | conserved hypothetical protein; putative base-induced periplasmic YceI-like protein TERM 2003 2416351 - 2416307 - f 76 -9.2 -4.07885 | gap 1, overlap 2416292 CAGCGCTTTGCAAAA TCCCTGCCACGCTTCGTGCGC GTGA GCGG-CGACGCGAGACAGAGA CCATGTTCGAGATTC RALTA_A2278 2416354 - 2416662 + | putative membrane lipoprotein TERM 2004 2417063 - 2417039 - g 71 -11.4 -3.53761 | gap 1, overlap 2417027 GAAGCCCGCCTGAAA CGCGCCGCGGC CCGC GCCG-AGCGCG TGACCGTCTACACCT RALTA_A2279 2416760 - 2417308 + | conserved hypothetical protein yaeQ homolog TERM 2005 2417304 - 2417330 + F 79 -10.8 -3.83502 | overlap 2417306 TCCAGCGCGCCCAAG CCTGAGCGCAGC GGC GCTGCGCTCATC TTTCCTGTCCACGTC TERM 2006 2417306 - 2417328 + F 95 -17.8 -3.5032 | overlap 2417304 CAGCGCGCCCAAGCC TGAGCGCAGC GGC GCTGCGCTCA TCTTTCCTGTCCACG TERM 2007 2417498 - 2417484 - g 78 -9.2 -4.25104 | overlap 2417465 CTGGCTGTACGAAAA CGGCCA GGC CGGCCG CAAGTTCGATTCGAG RALTA_A2280 2417371 - 2417718 + | putative FKBP-TYPE PEPTIDYL-PROLYL CIS-TRANS ISOMERASE (PPIASE) TERM 2008 2417777 - 2417733 - T 71 -13.7 -2.55392 | gap 3, opp_overlap 2417734, overlap 2417720 2417729 AAGCTAGCGAATTGA GCCGGCGCCACGCCGCTCCCGC ACCA GCAGGAGCGGCAT--C-CCGGC CGAAGTGTTCAGCCC TERM 2009 2417845 - 2417821 - T 81 -12.1 -3.89346 | overlap 2417822 GGGCGACCTCAGAAA CCGATGGCGGC ATT GCCGACATCGA CGCGGACCTTGTCGC TERM 2010 2417844 - 2417822 - T 74 -13.4 -2.93393 | overlap 2417821 GGCGACCTCAGAAAC CGATGGCGGC ATT GCCGACATCG ACGCGGACCTTGTCG RALTA_A2281 2418134 - 2417814 - | hypothetical protein TERM 2011 2417982 - 2418015 + g 74 -14.7 -3.04144 | gap 1, overlap 2417984 2417989 CACCAGCACCTTGCC CACCGGGCTCGA-TGC CTG GCAGTCGAGTTCGGTG TATTCCCGGTCGAAC RALTA_A2282 2418338 - 2419150 + | putative cation transport regulatory protein RALTA_A2283 2419168 - 2419968 + | conserved hypothetical protein, ANKYRIN REPEAT; putative membrane protein TERM 2012 2420013 - 2419994 - T 100 -13.6 -5.33405 | opp_overlap 2419994 CGCAGGAAAGAAAAA GGCTGGTC GCGC GACCAGCC TTTTTCGTGCCACGA TERM 2013 2419994 - 2420013 + T 100 -13.6 -4.72272 | opp_overlap 2419994 CGCAGGAAAGAAAAA GGCTGGTC GCGC GACCAGCC TTTTTCGTGCCACGA fadD2 2421751 - 2420036 - | LONG-CHAIN-FATTY-ACID--COA LIGASE PROTEIN RALTA_A2285 2421950 - 2422795 + | putative THIOREDOXIN PROTEIN RALTA_A2286 2422867 - 2423244 + | conserved hypothetical protein, DUF861 RALTA_A2287 2423716 - 2423276 - | hypothetical protein TERM 2014 2423758 - 2423745 - H 77 -4.5 -4.84017 | overlap 2423746 AAGCGTGGAGAAAAA CGGCA AGGA TACCG AATCAGCGGGACCCA RALTA_A2288 2423850 - 2424428 + | conserved hypothetical protein; putative ATPase RALTA_A2289 2425327 - 2424458 - | putative activating enzyme (E1 family) of ubiquitin-like proteins; NAD/FAD-binding protein RALTA_A2290 2425537 - 2427867 + | putative outer membrane biogenesis protein, AsmA family TERM 2015 2428093 - 2428075 - f 73 -8.1 -4.09685 | gap 1, opp_overlap 2428076 2428078, overlap 2428076 TGGCATCCTTGAAAA GGCGCGGC CGCG GCCGC-CC TTTGTTTTGCTGCCG TERM 2016 2428076 - 2428093 + F 88 -8.3 -4.72007 | opp_overlap 2428075 2428076, overlap 2428078 GGCATCCTTGAAAAG GCGCGGC CGCG GCCGCCC TTTGTTTTGCTGCCG RALTA_A2291 2428196 - 2429407 + | putative transporter, Major facilitator superfamily MFS_1 TERM 2017 2429815 - 2429791 - g 77 -11.3 -3.85704 | TCACCAACTATGAAA GCCGCAAGGGC CTG GACCTGGCGGC AAATCCGCGCGCCGC pdxH 2429550 - 2430188 + | pyridoxine 5'-phosphate oxidase TERM 2018 2431524 - 2431503 - g 79 -3 -4.82901 | gap 1 GGTGGGCGAGAAAAA GTAC-CGCA TCTGG CGCGTGTAC CTGGCCGGCTGCGCG cfa 2430424 - 2431665 + | CYCLOPROPANE-FATTY-ACYL-PHOSPHOLIPID SYNTHASE TERM 2019 2431831 - 2431789 - g 71 -11.2 -3.6502 | gap 1, overlap 2431805 GACTCCCCAGGCAAA CCGGCGCGTGGCAAGAGCG TGCAGC CGTTCCCGGC-CGCGCCGG CGCTGCAGGCGCTGG TERM 2020 2431861 - 2431805 - g 87 -19.5 -3.01712 | gap 4, opp_overlap 2431833 2431835 2431837 2431849, overlap 2431789 CGGCGCGTGGCAAGA GCGTGCAGCCGTTCCCGGCC-GCGCCGGC GCT GCAGGCGCTGGCCGCG--CGGCTGC-CGC CGCACCTGTATTTCG RALTA_A2294 2431681 - 2432760 + | conserved hypothetical protein, DUF72 TERM 2021 2432742 - 2432767 + T 74 -12.5 -3.35088 | GGCCGAAGCCATCGT GGCGCGGCTGG AGGG CTAGGCGCGCC TTACTTGCGCAGTTT msrA 2433310 - 2432768 - | Protein-methionine-S-oxide reductase RALTA_A2296 2434955 - 2433393 - | putative O-succinylbenzoate--CoA ligase RALTA_A2297 2436205 - 2434952 - | putative acyl-CoA dehydrogenase RALTA_A2298 2437119 - 2436298 - | putative hydrolase; putative 3-oxoadipate enol-lactonase RALTA_A2299 2438186 - 2437116 - | hypothetical protein RALTA_A2300 2438354 - 2438914 + | putative MONOOXYGENASE OXIDOREDUCTASE, Flavin reductase-like, FMN-binding domain RALTA_A2301 2438932 - 2439390 + | putative TRANSCRIPTIONal REGULATOR, MarR family RALTA_A2302 2439872 - 2439387 - | putative TRANSCRIPTIONal REGULATOR, AsnC/Lrp family TERM 2022 2440021 - 2440001 - H 76 -11.1 -3.71873 | CGAGGCACACCGAAA CGGCGCC CGCAGAC GGCGCCG CGCAACCTATGACCG RALTA_A2303 2440030 - 2440680 + | putative metal-dependent hydrolase/ cyclase RALTA_A2304 2440717 - 2441973 + | putative pyridoxal-5'-phosphate (PLP)-dependent kynureninase RALTA_A2305 2441987 - 2442877 + | putative Tryptophan 2,3-dioxygenase; putative exported protein RALTA_A2306 2443760 - 2442939 - | putative TRANSCRIPTIONal REGULATOR, IclR family TERM 2023 2443888 - 2443872 - H 70 -12.3 -3.13788 | overlap 2443863 2443870 2443868 ATTCAACGGAACACA GTTCCGC AAT GCGGAAC TTCCAGGATCCCGAA TERM 2024 2444991 - 2444942 - g 71 -9.8 -3.78934 | GCTGGTGCAGAAGAA GCTGGCCGACATGCAGACCGAG ATCACG CTGGGCCTGCAAGGCTGCCTGC GCCTGGGCCGCATGA gcdH 2444052 - 2445245 + | GLUTARYL-COA DEHYDROGENASE TERM 2025 2445280 - 2445261 - T 100 -12.1 -5.31275 | GCCCAGCATAAAAAA GCCCGGC GATGAA GCCGGGC CAAGCACACTACCAA TERM 2026 2445336 - 2445369 + T 100 -22.5 -4.1822 | opp_overlap 2445329 2445327 ATACAACACCTGCCT TGCACACGGCCCCGC CCTG GCGGGGCCGTGTTCA TTTATTGGGCTGGGG RALTA_A2308 2446005 - 2445367 - | putative ANTIOXIDANT OXIDOREDUCTASE; putative peroxidase, Peroxiredoxin TERM 2027 2446459 - 2446449 - g 72 -4.6 -4.45664 | GCAAGCCAAGGAAAA GGCC CAG GACC TGCAAGACGCCGTCG RALTA_A2309 2446321 - 2446596 + | conserved hypothetical protein, DUF88; putative TRANSMEMBRANE PROTEIN RALTA_A2310 2446830 - 2447210 + | conserved hypothetical protein; putative TRANSMEMBRANE PROTEIN RALTA_A2311 2447207 - 2447713 + | hypothetical protein RALTA_A2312 2450627 - 2447727 - | putative signaling diguanylate cyclase (GGDEF) with EAL and PAS domains TERM 2028 2450719 - 2450744 + r 80 -14.7 -3.23692 | opp_overlap 2450719 GAAACAATGCAAAAA GGGCCTGTGAC TTGC GCCACAGGCCC TTCGTAATACTGGTG TERM 2029 2450744 - 2450719 - R 100 -16.9 -4.8384 | opp_overlap 2450719 GAAACAATGCAAAAA GGGCCTGTGAC TTGC GCCACAGGCCC TTCGTAATACTGGTG RALTA_A2313 2452014 - 2450899 - | conserved hypothetical protein; putative TRANSMEMBRANE PROTEIN TERM 2030 2451979 - 2451964 - G 72 -9 -3.97834 | GAAGGTCAGGACAAA GGTGCT CAGC AGCACC GAGCGCGACAGCGCG queC 2452732 - 2452049 - | queuosine biosynthesis protein QueC putative homolog TERM 2031 2452824 - 2452807 - R 100 -10.5 -5.04601 | GCGACAAACGAAAAA GGCCCGC CGAA GCGAGCC TTGCGGTGGCGGGCG ygcF 2453608 - 2452850 - | periplasmic protein, associated to Tol-Pal complex pal 2454133 - 2453624 - | colicin transport component, peptidoglycan-associated outer membrane lipoprotein tolB 2455522 - 2454149 - | colicin transporter component tolA 2456844 - 2455729 - | membrane spanning protein in TolA-TolQ-TolR complex; inner membrane associated component TERM 2032 2456180 - 2456223 + g 76 -7.8 -4.2803 | overlap 2456214 TCGGCCTGGGCCTTC GCCTTGGCGTCCGCCTGGGC CTTG GCCTTGGCATCCGCCTGGGC TTTTGCCTTGGCCTC TERM 2033 2456485 - 2456509 + g 75 -10 -3.9644 | overlap 2456484 GCGCTCGGCTTCTTC GCG-CGCGGCCG CCT CGG-CGCGGCGC TTCTTCTGTTCCAGC tolR 2457309 - 2456866 - | membrane spanning protein in TolA-TolQ-TolR complex, inner membrane associated component tolQ 2458053 - 2457370 - | membrane spanning protein in TolA-TolQ-TolR complex; putative proton channel component TERM 2034 2457706 - 2457739 + g 78 -17.4 -2.71364 | gap 1, overlap 2457712 GTAGGCCGCACGCAT GGCACGGCGCGCGGC GTCGA GCAGCGCGCCG-GCC TCGTTGCCGCGCTCG TERM 2035 2457712 - 2457759 + g 78 -14.2 -3.54424 | gap 3, overlap 2457706 CGCACGCATGGCACG GCGCGCG-GCGTCGAGCAGCGCG CCGGC CTCGTTGC-CG-CGCTCGCGCGC TTTCAGGAACTCGCC ybgC 2458454 - 2458050 - | acyl-CoA thioesterase, associated to Tol-Pal complex TERM 2036 2460035 - 2459997 - g 79 -11.1 -4.0342 | overlap 2459998 TTCAAGGAAGAAGAA GCCC-GCATCGTCGGCAAC CTG ATCGCCGACG-TGCTGGAC AACCCGCACGACGCC glyA 2458869 - 2460116 + | serine hydroxymethyltransferase TERM 2037 2460459 - 2460431 - g 90 -8 -5.07486 | overlap 2460432 CATCGTCAAGAAAAA CGGCTCGCGCGT GGACT ACGCCCGTGCCA AGCTGAAGGATTCGA TERM 2038 2460698 - 2460739 + G 75 -8.5 -4.13767 | opp_overlap 2460709, overlap 2460699 ATTCTCGGACGTGCT GGCGGAAGTCACCGCCGGC AGCG GCAAGCGCTGACGTCCGCG TTTTCCGCTACCAGC RALTA_A2323 2460267 - 2460731 + | conserved hypothetical protein; putative regulator, zinc finger domain, ATP cone domain RALTA_A2324 2461205 - 2460747 - | putative TYPE 4 fimbrial BIOGENESIS TRANSMEMBRANE pilE-related PROTEIN TERM 2039 2460977 - 2460952 - G 83 -15.4 -3.57263 | ATCTGCACCGGGAAA GCCGCGCCGG CATAGC CCAGCGCGGC AGGCGTGCCGCCATA RALTA_A2325 2464600 - 2461211 - | putative type-4 fimbrial biogenesis protein precursor; pily1 domain, Con A-like domain TERM 2040 2461240 - 2461262 + g 82 -16.2 -3.28416 | TCCAGTTGAGGCGGG CGCCGGCGCC ATT GGCGCCGGGG TTGATCTGCGTGATG TERM 2041 2463815 - 2463848 + g 90 -20.3 -3.15544 | opp_overlap 2463812 GTCCTGCACATAGCC GCGCGCGCAGGTGTT CTGC ACCGCCTGCGCGCGC TTGCTGGCGCTCAGG RALTA_A2326 2465190 - 2464597 - | putative type-4 fimbrial biogenesis transmembrane pilX-related protein precursor RALTA_A2327 2465930 - 2465187 - | putative type 4 fimbrial biogenesis transmembrane pilW-related protein precursor RALTA_A2328 2466448 - 2465927 - | putative type-4 fimbrial biogenesis pilV-related transmembrane protein RALTA_A2329 2466984 - 2466481 - | putative typeIV fimbrial fimT-related pilin RALTA_ACDS2467000R 2467481 - 2466999 - | hypothetical protein RALTA_A2330 2467587 - 2467907 + | hypothetical protein RALTA_A2331 2467904 - 2468842 + | putative type 4 fimbrial biogenesis pilW-related transmembrane protein precursor RALTA_A2332 2468911 - 2469441 + | putative type 4 fimbrial biogenesis pilX-related signal peptide protein RALTA_A2333 2469441 - 2471285 + | Putative type 4 fimbrial biogenesis Pily1-related protein transmembrane RALTA_A2334 2471285 - 2471737 + | putative type 4 fimbrial biogenesis pilE-related transmembrane protein precursor RALTA_A2335 2471751 - 2472320 + | putative TYPE 4 FIMBRIAL PILIN fimT-related TRANSMEMBRANE PROTEIN ribD 2472373 - 2473488 + | bifunctional: diaminohydroxyphosphoribosylaminopyrimidine deaminase (N-terminal); 5-amino-6-(5-phosphoribosylamino) uracil reductase TERM 2042 2473823 - 2473813 - g 75 -8.2 -4.14392 | opp_overlap 2473822 CGTCAACCTGGAAAA GGCG CTG CGCC TGGCCGACCGGCTGG ribC 2473550 - 2474173 + | RIBOFLAVIN SYNTHASE (ALPHA CHAIN) PROTEIN ribAB1 2474454 - 2475563 + | RIBOFLAVIN BIOSYNTHESIS BIFUNCTIONAL PROTEIN : GTP CYCLOHYDROLASE II AND 3, 4-DIHYDROXY-2-BUTANONE-4-PHOSPHATE SYNTHASE (DHBP SYNTHASE) ribE1 2475648 - 2476148 + | riboflavin synthase, beta chain TERM 2043 2476204 - 2476160 - g 82 -17.8 -3.05343 | gap 1, overlap 2476171 2476173 GTGATACCTCGAACA CGCCGGACCAAGACGCCGGCA AGGG CGCCGGCGGCA-AGTCCGGCG CGGCCCGCACCGAAG nusB 2476141 - 2476659 + | antitermination factor (N UTILIZATION SUBSTANCE B) (TRANSCRIPTIONAL ANTITERMINATOR) TERM 2044 2476725 - 2476742 + F 100 -12.7 -4.54727 | opp_overlap 2476720 2476725 CGGCGATGAAGACGA CACCCGC CGCG GCGGGTG TTTTCATTTCCCACC TERM 2045 2476900 - 2476875 - g 78 -17.5 -2.71364 | opp_overlap 2476871 GGAGCTGGCCAAGCA GGCCGCCGCGC TGGA GCGCGCCGGCC GCCATATCGTGCACA RALTA_A2341 2476798 - 2477979 + | Aspartate aminotransferase TERM 2046 2478032 - 2478017 - T 100 -10.4 -5.46657 | opp_overlap 2478017 2478012, overlap 2477967 CAGGCCAACAAAAAA GCACCC CGCG GGGTGC TTTTCTTCTGGGCGA TERM 2047 2478017 - 2478032 + T 100 -10.4 -4.77165 | opp_overlap 2477967 2478017, overlap 2478012 CAGGCCAACAAAAAA GCACCC CGCG GGGTGC TTTTCTTCTGGGCGA RALTA_A2342 2479180 - 2478062 - | putative lytic transglycosylase TERM 2048 2479354 - 2479326 - H 75 -12.4 -3.66178 | GCGCCCAACTGGAAA CAGGTCGCGCCC TGGGG GGGCACTACCTG CCACGACTTAACTCT ubiD 2479829 - 2481355 + | 3-octaprenyl-4-hydroxybenzoate decarboxylase TERM 2049 2481350 - 2481387 + F 77 -15.5 -2.67747 | overlap 2481350 GAACGTCCCGCCGGT CGCTGATGGCAGCCGGC ACGC GCCGGCTGCGATCCGCC GTTATCATGTCACGC TERM 2050 2481350 - 2481388 + F 85 -15.3 -3.4678 | gap 1, overlap 2481350 GAACGTCCCGCCGGT CG-CTGATGGCAGCCGGC ACGC GCCGGCTGCGATCCGCCG TTATCATGTCACGCT RALTA_A2344 2481488 - 2483512 + | Acetoacetyl-coenzyme A synthetase (Acetoacetate--CoA ligase 1) (Acyl-activating enzyme 1) RALTA_A2345 2483535 - 2484437 + | Putative Aldose epimerase RALTA_A2346 2484829 - 2484452 - | hypothetical protein RALTA_A2347 2484971 - 2485249 + | hypothetical protein TERM 2051 2485378 - 2485390 + F 100 -4.7 -5.46657 | overlap 2485379 CCACCGTTACGGTGA TCCGC CCG GCGGC TTTTTTGTTGCCATG TERM 2052 2485379 - 2485389 + F 71 -8.2 -3.86909 | overlap 2485378 CACCGTTACGGTGAT CCGC CCG GCGG CTTTTTTGTTGCCAT trmB 2485403 - 2486188 + | tRNA (m7G46) methyltransferase, SAM-dependent TERM 2053 2486240 - 2486203 - T 74 -14.3 -2.64274 | opp_overlap 2486207 2486213, overlap 2486207 2486213 AGCGCGGCAAACGCA CAAACAAAAAGCGTGGC ATCT GCCACGCTTTTTTGTTG CCTGCTGCACCGCGC TERM 2054 2486207 - 2486237 + T 75 -13.5 -3.09516 | gap 1, opp_overlap 2486203 2486207 2486213, overlap 2486213 CGGCAAACGCACAAA CAAAAA-GCGTGGC ATCT GCCACGCTTTTTTG TTGCCTGCTGCACCG TERM 2055 2486236 - 2486207 - T 90 -13.7 -4.02132 | opp_overlap 2486207 2486213, overlap 2486203 2486213 CGGCAAACGCACAAA CAAAAAGCGTGGC ATCT GCCACGCTTTTTT GTTGCCTGCTGCACC TERM 2056 2486213 - 2486230 + T 100 -12.7 -5.4833 | opp_overlap 2486207 2486203 2486213, overlap 2486207 ACGCACAAACAAAAA GCGTGGC ATCT GCCACGC TTTTTTGTTGCCTGC TERM 2057 2486230 - 2486213 - T 100 -12.7 -5.38958 | opp_overlap 2486213 2486207, overlap 2486207 2486203 ACGCACAAACAAAAA GCGTGGC ATCT GCCACGC TTTTTTGTTGCCTGC uppP 2487140 - 2486259 - | undecaprenyl pyrophosphate phosphatase; bacitracin resistance RALTA_A2350 2487781 - 2487221 - | putative transmembrane lipoprotein RALTA_A2351 2488126 - 2487842 - | hypothetical protein TERM 2058 2489141 - 2489124 - g 72 -3.3 -4.58395 | GCCACCGCCGAAAAA GACATCG ACCC CGAGGCC TTCCTCGATGGACTG RALTA_A2352 2488512 - 2489336 + | putative TRANSCRIPTIONal REGULATOR PROTEIN, TetR/AcrR-family TERM 2059 2490378 - 2490351 - g 78 -14.1 -3.55444 | overlap 2490332 GCGGCATGGTGGAAA TCGTCGCCGGC CTCGAC GCCGGCGCCGA GATCGTGCGCAACAA RALTA_A2353 2489333 - 2490442 + | Putative secretion protein, HlyD family TERM 2060 2490631 - 2490613 - g 72 -13.8 -3.12327 | overlap 2490611 GGTGCAGACCGAATA CCCCGGCG CCG CGCCGGAG TCGGTCGAGTCCGAC TERM 2061 2491362 - 2491344 - g 77 -14.6 -3.22475 | overlap 2491342 CGCAGGGCCAGAACA CCGTCGAC ACC GTCGACGG CCTGGTGCGCATGAC RALTA_A2354 2490461 - 2493697 + | Multidrug efflux transporter AcrB/AcrD/AcrF family, nolG homolog pcm2 2493838 - 2494464 + | Protein-L-isoaspartate O-methyltransferase RALTA_A2356 2494477 - 2494800 + | conserved hypothetical protein, putative sulfurtransferase, Rhodanese family TERM 2062 2494873 - 2494836 - f 77 -4.5 -4.93661 | opp_overlap 2494864, overlap 2494839 ACACGAAGAAGAAAA CGACTGTCGGCCGCGGC ACCC GCCGCGCCCACCTGGAG GTGTCATGACGTTTG TERM 2063 2495110 - 2495079 - g 70 -12.2 -3.30124 | gap 1, overlap 2495080 GGCCACGCGCGAGAA GCTGCCGCAGGGCCG CGC CGGCC-TGCTGCCGC AGGTGGTGGGTACCG TERM 2064 2496361 - 2496328 - g 100 -16.7 -4.08064 | gap 1 AAGGTGCCGGCAAAA GCGGC-TGCCGCAGCG GAT CGCCGCGGCACGCGGC GCGACGGCGGAACGC tolC 2494879 - 2496387 + | Type I secretion outer membrane protein, TolC TERM 2065 2496411 - 2496392 - T 86 -16.4 -3.14132 | opp_overlap 2496392 CGCGCTCCTGATCAA CGGGCCGC AACC GCGGCCCG TTTTCTTTGTGTGGT TERM 2066 2496392 - 2496411 + T 100 -16.4 -5.06016 | opp_overlap 2496392 CGCGCTCCTGATCAA CGGGCCGC AACC GCGGCCCG TTTTCTTTGTGTGGT TERM 2067 2496491 - 2496437 - T 78 -14.3 -3.01712 | gap 1, opp_overlap 2496427 2496438 GTGGTGCGGCGAAGA TGC-GCCGGCTGTCTCCCCTCTCCCA TAAA TGGGAGAGGGGAGCAAACCAACAGCT ATTGCGCCCGTGTCC RALTA_A2358 2497296 - 2496490 - | putative transmembrane lipoprotein, DUF306 RALTA_A2359 2497681 - 2498970 + | putative lipopolysaccharide o-antigen ligase transmembrane protein RALTA_A2360 2499197 - 2500459 + | putative lipopolysaccharide o-antigen export integral membrane protein RALTA_A2361 2500456 - 2501589 + | putative Glycosyl transferase, group 1 kdtA 2502915 - 2501623 - | 3-DEOXY-D-MANNO-OCTULOSONIC-ACID TRANSFERASE TRANSMEMBRANE PROTEIN TERM 2068 2502718 - 2502728 + g 70 -8.2 -3.86015 | TTCGATCAGCGGTTG CGCG GCC CGCG TTTCTCCAACCGATA rfaC1 2503958 - 2502912 - | ADP-heptose; Lipopolysaccharide heptosyltransferase I cpsG 2505375 - 2503990 - | phosphomannomutase TERM 2069 2504411 - 2504429 + g 70 -8.8 -3.93369 | TGTCCGCTCATCTCG CCGGCG ATTGGCG CGCCGG TTTCCTTGAGCTTGG TERM 2070 2504811 - 2504776 - G 72 -8.2 -4.09685 | overlap 2504778 GTCGACTTCGCAAAA CAGTTCCGTTACCTCG CAAC CGAGCCCACGGAACAG GTCGCCCACGAAGGC TERM 2071 2504966 - 2504990 + g 74 -10.7 -3.73775 | opp_overlap 2504957, overlap 2504971 GCAAAGGCGCCGGCC TCGATGCGCTG GTG CAGCGCCTTGA TTTGCTCGCCGTAGA RALTA_A2365 2505648 - 2506787 + | putative Glycosyl transferase, group 1 RALTA_A2366 2506793 - 2508109 + | putative UDP-galactose-lipid carrier transferase, putative Undecaprenyl-phosphate galactose phosphotransferase RALTA_A2367 2508106 - 2509341 + | putative Glycosyl transferase, group 1; putative Phosphatidylinositol N-acetylglucosaminyltransferase RALTA_A2369 2509676 - 2510047 + | putative Transcriptional regulator, MarR family RALTA_A2370 2510277 - 2510960 + | hypothetical protein RALTA_A2371 2510972 - 2512057 + | putative pyridoxal-phosphate-dependent aminotransferase; putative exported protein RALTA_A2372 2512069 - 2513199 + | putative pyridoxal-phosphate-dependent/PLP-dependent aminotransferase RALTA_A2373 2513205 - 2514569 + | Putative O-antigen transporter TERM 2072 2515286 - 2515257 - g 70 -8.5 -3.85817 | gap 1 ATCTTCGTTCAGAAA GCCCCGG-CATCGA CGA TCGAAGACCTGGGC ACGGCTATCAAGGAG RALTA_A2374 2514582 - 2515592 + | putative Polysaccharide biosynthesis protein, CapD motif; putative epimerase, isomerase RALTA_A2375 2515589 - 2516770 + | putative Glycosyl transferase, family 2 TERM 2073 2517493 - 2517505 + G 75 -4.7 -4.56367 | TTCGATTGAGCTTCC CCTGG TAT CCCGG TTTCTTTATGAAATC RALTA_A2376 2516834 - 2517898 + | conserved hypothetical protein; putative Lipopolysaccharide export membrane protein RALTA_A2377 2517898 - 2518713 + | putative glycosyl transferase, group 2 RALTA_A2378 2518723 - 2519844 + | putative Glycosyltransferase RALTA_A2380 2521638 - 2520418 - | Transposase of insertion sequence ISRta1 ; ISL3 family TERM 2074 2521414 - 2521398 - G 74 -11.5 -3.73072 | AACGGTCGCACCAAA CGCGCCG GCG CGGCACG TGCAGTACGACCCGA RALTA_A2382 2522188 - 2522892 + | putative SAM-dependent methyltransferase RALTA_A2383 2522896 - 2523237 + | hypothetical protein RALTA_A2384 2523234 - 2524592 + | hypothetical protein RALTA_A2385 2525594 - 2524710 - | Conserved hypothetical protein; membrane protein TERM 2075 2524904 - 2524923 + g 77 -3.5 -4.72729 | GCGTGTTCTTGCGGA GGCGC AGAAAACGAA GCGCC TTTTCATTTTCATTG RALTA_A2386 2526693 - 2525596 - | putative Glycosyl transferase, family 4; putative Phospho-N-acetylmuramoyl-pentapeptide-transferase rfbC 2527372 - 2526821 - | dTDP-4,deoxyrhamnose 3,5 epimerase rfbA 2528247 - 2527369 - | dTDP-glucose pyrophosphorylase TERM 2076 2527561 - 2527541 - G 85 -11.1 -4.37092 | AGCGTGGCGATAAAA CTCGCCGCC TCA AGCAGCGAG TCGTGCGTGCCCGTA TERM 2077 2527752 - 2527764 + g 75 -4.7 -4.56597 | opp_overlap 2527751 2527752, overlap 2527753 CCGCATAGTTAGAAC GCGGC TTC GCCGG TTTTTCGGCGAGCGA rfbD 2529169 - 2528258 - | TDP-rhamnose synthetase, NAD(P)-binding rfbB 2530226 - 2529162 - | dTDP-glucose 4,6 dehydratase, NAD(P)-binding TERM 2078 2530352 - 2530375 + H 86 -5.1 -5.11063 | overlap 2530354 TATCCGAGGGACACC GTGGACCGG CACTCA CCGGACCTC TTTTTGTTGCCTCAT apaH 2530458 - 2531306 + | Diadenosine tetraphosphatase plsC2 2532175 - 2531342 - | Phospholipid/glycerol acyltransferase; 1-ACYL-SN-GLYCEROL-3-PHOSPHATE ACYLTRANSFERASE TRANSMEMBRANE PROTEIN pyrX 2533455 - 2532172 - | DIHYDROOROTASE, Carbamoylaspartic dehydrase pyrB 2534510 - 2533539 - | ASPARTATE CARBAMOYLTRANSFERASE (CATALYTIC CHAIN) PROTEIN TERM 2079 2534566 - 2534584 + r 73 -13.1 -3.16742 | CTCGGAGCGGGGTCG GGGGCGC GCCGG GCGCCCC TTGGTGCCGGTTCAG pyrR 2535132 - 2534596 - | PyrR bifunctional protein: Pyrimidine operon regulatory protein; Uracil phosphoribosyltransferase (UPRTase)] TERM 2080 2534898 - 2534917 + g 71 -10.7 -3.66018 | GCAGCGTGGTCGGCT GGGCCTG GCTGTG CAGGCCC TTCTTGGCGTAGTCG RALTA_A2396 2535554 - 2535129 - | Holliday junction resolvase RALTA_A2397 2536128 - 2535547 - | conserved hypothetical protein, DUF179 rsuA 2537012 - 2536305 - | 16S rRNA pseudouridylate 516 synthase TERM 2081 2538408 - 2538426 + G 74 -16 -2.73468 | overlap 2538397 2538395 ATGGGCCGCGTCCAC CGGCTGCG ACG CGCAGCCG TGGTTCCGCATCTTC phr 2537152 - 2538711 + | deoxyribodipyrimidine photolyase (photoreactivation), FAD-binding hemY 2539923 - 2538733 - | protoheme IX synthesis protein RALTA_A2401 2542066 - 2539928 - | BIFUNCTIONAL: UROPORPHYRIN-III C-METHYLTRANSFERASE AND UROPORPHYRINOGEN-III SYNTHASE TRANSMEMBRANE PROTEIN TERM 2082 2540592 - 2540649 + g 71 -11.1 -3.58343 | AGCGCGACCTGCACG TTGCCGGTCAGCTGCAGCTGCTGGCCG GCGC TGGTCAGCAGCTGCTGGATCTCGGCGA TTTCCCAGTCGTCGC hemC 2543086 - 2542076 - | hydroxymethylbilane synthase (porphobilinogen deaminase) TERM 2083 2543568 - 2543512 - g 83 -12.8 -4.07568 | gap 1, overlap 2543478 2543513 2543515 CTTCCGCCGCGAAAA CGACCGCGCCGCCGGCGCC-GAGCTGG ACCG CCTGCTCAAGCGCCTGTCGCGCGACCA GACCAACCAGGTGGT ppc 2543162 - 2546191 + | phosphoenolpyruvate carboxylase RALTA_A2404 2547032 - 2546421 - | conserved hypothetical protein; putative exported protein TERM 2084 2546998 - 2547013 + g 70 -8.2 -3.89524 | overlap 2546961 GTGATGAGGGTTCCG GGCTCG CGCG CGGGCC TTTGTGACATGCGGT RALTA_A2405 2547176 - 2547775 + | RNA polymerase sigma factor, sigma-24 TERM 2085 2548416 - 2548385 - g 73 -13 -3.53012 | gap 1 GCCGTGTGCCGCAAA CGCGGCTGGC-GCTG GCG CAGCCGCCAACGGCG GTGCCCGTGCTGGCC RALTA_A2406 2547772 - 2548524 + | conserved hypothetical protein, COG5343; putative TRANSMEMBRANE PROTEIN TERM 2086 2549552 - 2549537 - g 72 -4.6 -4.52873 | overlap 2549538 GCCGCAGAAAAAGAA CCCGGA CGTG CCCGAG CTGGCGCGCGGCAAG argH 2548659 - 2550071 + | argininosuccinate lyase TERM 2087 2550148 - 2550120 - f 84 -11 -4.24342 | gap 1, opp_overlap 2550122, overlap 2550122 GTTCTGAGCAAGAAA TAGCCACCGTGGC GCGA GCC-CGGTGGCTT TTTTCATTGGTGCCG TERM 2088 2550146 - 2550122 - f 84 -13.6 -3.72374 | gap 1, opp_overlap 2550122, overlap 2550120 TCTGAGCAAGAAATA GCCACCGTGGC GCGA GCC-CGGTGGC TTTTTTCATTGGTGC TERM 2089 2550122 - 2550146 + F 100 -13.6 -5.30155 | gap 1, opp_overlap 2550122 2550120 TCTGAGCAAGAAATA GCCACCGTGGC GCGA GCC-CGGTGGC TTTTTTCATTGGTGC RALTA_A2408 2550268 - 2550810 + | putative Tripartite ATP-independent periplasmic (TRAP-type) mannitol/chloroaromatic compound transport system, small permease component RALTA_A2409 2550807 - 2552534 + | putative Tripartite ATP-independent periplasmic (TRAP-type) mannitol/chloroaromatic compound transport system, large permease component TERM 2090 2552560 - 2552579 + F 100 -15 -4.8622 | opp_overlap 2552559 GATCGCCGACCACAG GCCCCGCA GCAA TGCGGGGC TTTTTCATTGCGGCA TERM 2091 2553049 - 2553010 - g 78 -16.4 -3.04144 | gap 1, opp_overlap 2553004 2553039 CGCCGAGGCGGAACA CCGCGCCATCCTGGCCCAG GCG CTGGGCG-GCACGGCGCGG CGCAGCTTTGCCGAG RALTA_A2410 2552768 - 2553151 + | putative toxin-antitoxin system, putative antitoxin (stbC-like) TERM 2092 2553180 - 2553209 + G 93 -17.1 -3.61398 | AGCGAGACGCGCAAG CGCGAGCGCGCCA ACCC TGGCGTGCGCGCG TTCTTCCGGCAGGCC RALTA_A2411 2553138 - 2553554 + | putative toxin-antitoxin system, putative toxin (stbB-like) TERM 2093 2553589 - 2553568 - T 100 -18.7 -5.27023 | AGCGCAAAAAGAAAA GGGCCCCGC CGTG GCGGGGCCC TTCCAGCAACGGCGC adi 2555890 - 2553620 - | BIODEGRADATIVE ARGININE DECARBOXYLASE PROTEIN dcd 2556604 - 2556038 - | DEOXYCYTIDINE TRIPHOSPHATE DEAMINASE PROTEIN fdhD1 2557528 - 2556698 - | Formate dehydrogenase accessory protein RALTA_A2415 2557943 - 2557584 - | conserved hypothetical protein; putative exported protein fdhC 2559197 - 2557977 - | formate dehydrogenase, cytochrome C subunit, gamma subunit TERM 2094 2558808 - 2558834 + g 76 -13.6 -3.44146 | opp_overlap 2558796 CAACCGCCACGACTG GCCGGTGCGCTG GAT CAGCACCCCGGC TTCCTTGTCGGGCAG TERM 2095 2558882 - 2558898 + g 71 -10.8 -3.62046 | opp_overlap 2558879 GGTCGGAATTGACCT CGCGCC ACATC GGCGCG TTGTTGCCGGGCTGC RALTA_A2417 2559483 - 2559247 - | conserved hypothetical protein; PUTATIVE LIPOPROTEIN fdhB 2560178 - 2559480 - | FORMATE DEHYDROGENASE, IRON-SULFUR SUBUNIT TERM 2096 2559525 - 2559541 + g 71 -10.8 -3.61398 | overlap 2559502 GGCCGCCGGCGCGGT CGGCGC GGCGG GCGCCG TTGTTGCGGGGGCGG fdhA1 2563226 - 2560194 - | formate dehydrogenase, alpha subunit (Fe4S4 domain) RALTA_A2420 2563516 - 2563301 - | conserved hypothetical protein; PUTATIVE TRANSMEMBRANE PROTEIN torD 2564381 - 2563740 - | chaperone; signal peptide and TAT signal protection of TorA precursor RALTA_A2422 2566584 - 2564419 - | putative 4Fe-4S ferredoxin TERM 2097 2564759 - 2564741 - G 72 -6.6 -4.36914 | opp_overlap 2564740 2564746, overlap 2564743 TTGCGCTCGATAAAA CTGAGCAC CGG GCGCTCGG GGTTGTCGCGCAGCG RALTA_A2423 2567299 - 2566685 - | hypothetical protein RALTA_A2424 2567870 - 2567331 - | hypothetical protein mrp 2569011 - 2567887 - | Na+/H+ antiporter RALTA_A2426 2569312 - 2569950 + | putative outer membrane lipoprotein TERM 2098 2570057 - 2570076 + F 100 -12.1 -5.75945 | opp_overlap 2570054 2570055 CCGTTGTGGAAAGCT GCGCCGG CACTGA CCGGCGC TTTTTTTTGGCCGCT TERM 2099 2572261 - 2572248 - g 72 -5.9 -4.25104 | GGCCGCGGATGAAAA GACCG CGCC CGGCC TGTACATCCTCGAGC metG 2570248 - 2572314 + | methionine tRNA synthetase TERM 2100 2572366 - 2572387 + T 73 -11.5 -3.64703 | GGAGAGGGCGCCATC CCGCGGCAC GCCC GTGACGCGG TTTCCCTCGGCGGCG RALTA_A2428 2573063 - 2572515 - | conserved hypothetical protein; putative LIPOPROTEIN TERM 2101 2572973 - 2572992 + g 71 -10.6 -3.75105 | overlap 2572974 2572974 2572990 TCGCATTCCAGGTGT TGCGGGCG GTCT CGCCCGCC TTCTTCATGGCTTCA RALTA_A2429 2577258 - 2573107 - | conserved hypothetical protein, DUF490 COG2911; putative outer membrane surface antigen TERM 2102 2573517 - 2573573 + g 95 -18.8 -3.53811 | gap 3 CGCCGATCAGCCCCA GCGC-GGCGCCGCCCAGC-GC-CGAGC CGCTCA GCTGGCGCTGCTGGCCGGCGCCCGCGC TTTCGGCGCCGTAGC TERM 2103 2575725 - 2575670 - G 100 -20.7 -3.53012 | gap 3, opp_overlap 2575645 2575717 2575721, overlap 2575720 CCGGTCGCGGTGAAA TCGGCGTT-GATCCG--GCCCGCGGCCA CCT TGGCCACGCGCGACGGATCGAACGCCGA CAGCTTGCCCTTGAA RALTA_A2430 2579075 - 2577258 - | putative outer membrane protein; similar to D15 or Oma87 antigen RALTA_A2431 2579249 - 2579446 + | hypothetical protein scpA 2579487 - 2580377 + | Segregation and condensation protein panC 2580516 - 2581364 + | pantothenate synthetase TERM 2104 2581413 - 2581394 - T 100 -15 -5.27335 | opp_overlap 2581394 TCCGCCAAACAAAAA GGCAGGCC CGGC GGCCTGCC TTTTTCATGCCTGGC TERM 2105 2581394 - 2581413 + T 100 -15 -4.7497 | opp_overlap 2581394 TCCGCCAAACAAAAA GGCAGGCC CGGC GGCCTGCC TTTTTCATGCCTGGC RALTA_A2434 2582611 - 2581418 - | conserved hypothetical protein, DUF337, Uncharacterized iron-regulated membrane protein cobQ 2584328 - 2582805 - | COBYRIC ACID SYNTHASE cobU 2584367 - 2585071 + | bifunctional: cobinamide kinase; cobinamide phosphate guanylyltransferase cbiB 2585065 - 2586039 + | adenosylcobinamide-phosphate synthase TERM 2106 2586497 - 2586553 + G 70 -3.5 -4.47551 | gap 2, opp_overlap 2586465, overlap 2586544 GCCCGCCGCGACGCT GCTGCGCTGGCATGCCGCGCTGGCCGC GCGCG GCGG-CA-CGCTGCTGGTCGACGAAGC TTTTATCGATTGCCT cobD 2586036 - 2587052 + | L-threonine-O-3-phosphate decarboxylase btuF 2587069 - 2587974 + | cobalamin binding periplasmic transporter cobC 2588556 - 2587975 - | alpha-ribazole-5'-phosphate phosphohydrolase cobS1 2589380 - 2588541 - | cobalamin 5'-phosphate synthase cobT1 2590417 - 2589377 - | nicotinate-nucleotide dimethylbenzimidazole-P phophoribosyl transferase btuR 2591081 - 2590449 - | cob(I)alamin and cobinamide ATP-dependent adenolsyltransferase btuD 2591916 - 2591074 - | cobalamin transport system, ATP_binding component(ABC superfamily, atp_bind) TERM 2107 2591445 - 2591395 - G 72 -14.2 -3.14132 | gap 4, overlap 2591397 CGGCTCGTCGAGCAA CAGCAGCGGCGCCT-GCTGCGCCAGC GCC GC-GGC-CAGCGAGACG-CGCTGCCG CTCGCCGCCGGAGAG TERM 2108 2591427 - 2591397 - G 80 -16 -3.13403 | overlap 2591395 GCTCGTCGAGCAACA GCAGCGGCGCCTGC TGC GCCAGCGCCGCGGC CAGCGAGACGCGCTG btuC 2592920 - 2591913 - | cobalamin transport system, inner membrane component (ABC superfamily, membrane) btuB 2594837 - 2592945 - | Outer membrane cobalamin receptor translocator, tonB dependent RALTA_A2447 2595415 - 2595735 + | hypothetical protein RALTA_A2448 2595732 - 2596064 + | hypothetical protein TERM 2109 2596301 - 2596255 - f 79 -10.8 -3.92373 | opp_overlap 2596255 2596255, overlap 2596256 CATCCTAGTTAGAAA CGGCAAACGTCTGACATCCCGC ATT GTGGACAGTCAGACGTTTGACA GTTTCCCTGCCTGGT TERM 2110 2596523 - 2596557 + F 89 -13 -4.20084 | opp_overlap 2596528, overlap 2596516 2596528 GGCGGGGACCCCCTG AAAAAGGCGGTGGTTT TCT GAACCATCGCCTTTTC TTTTGCCTGCATGGT TERM 2111 2596552 - 2596528 - f 95 -10 -4.57569 | opp_overlap 2596516 2596523 2596528 GGACCCCCTGAAAAA GGCGGTGGTT TTCTG AACCATCGCC TTTTCTTTTGCCTGC TERM 2112 2596528 - 2596552 + F 100 -12.9 -5.10933 | opp_overlap 2596528, overlap 2596516 2596523 GGACCCCCTGAAAAA GGCGGTGGTTT TCT GAACCATCGCC TTTTCTTTTGCCTGC RALTA_A2449 2596671 - 2597111 + | conserved hypothetical protein, DUF589 COG2947 TERM 2113 2597662 - 2597676 + G 72 -8.5 -4.0641 | overlap 2597670 CTGTCGAGCCTGGTG GGCGC GGGCG GCGCC TTTGTCTCGGTGCCG RALTA_A2450 2597179 - 2598003 + | putative membrane lipoprotein, COG0477/DUF81 RALTA_A2451 2598133 - 2598831 + | conserved hypothetical protein, DUF541; putative exported protein TERM 2114 2598864 - 2598835 - T 74 -9.9 -3.81414 | gap 1 ATGCTGAAGTAAGAA GGGAGCTTGACCGC CAG GCGG-CGCGCTCCC TCTCCCGCTTGCGGG RALTA_A2452 2600466 - 2598913 - | putative AMP-dependent synthetase/ligase TERM 2115 2599130 - 2599112 - G 82 -14.6 -3.53091 | ACCGCCTCGCCGAAA TCGGCGTG CGG CACGCCGA TCACGGCGCTCTCGG RALTA_A2453 2601318 - 2600536 - | putative Enoyl-CoA hydratase/isomerase TERM 2116 2601169 - 2601115 - G 82 -14.9 -3.53012 | gap 1 GCGTTCGGCGGGAAA CTCGGCGATA-TCGGCGCCGGCGGCA AAGT TGCCGTCGGCGCCGCGCACCACCACG CAGCGCAGCGAGGTA RALTA_A2454 2602375 - 2601362 - | conserved hypothetical protein, UPF0065 TERM 2117 2602412 - 2602444 + r 71 -14.1 -2.50016 | gap 1, overlap 2602409 2602414 GAAAGTCAATCTGAT GGCCGCGC-GCGCC GGCATG GGCGCCGCGCGGCG GTGTTGCTGCTACGA TERM 2118 2602414 - 2602445 + r 76 -13.6 -3.17051 | gap 1, overlap 2602412 2602409 AAGTCAATCTGATGG CCG-CGCGCGCCGGC ATG GGCGCCGCGCGGCGG TGTTGCTGCTACGAC TERM 2119 2602491 - 2602477 - R 83 -9.2 -4.36914 | overlap 2602478 2602479 GGGCTCCCGACAAAA CGGCGC GGC GCGCCA GGCGCCGCGGGTGCG RALTA_A2455 2603997 - 2602534 - | Malonyl-CoA decarboxylase TERM 2120 2602856 - 2602900 + g 70 -12 -3.28712 | overlap 2602824 2602857 AGCCAGGCCGCGCCG TCGGCTGGTGCGCTGCCGTG CCGCT CGTTCCAGCGCGCCAGCCGC TTGTCGCCCAGCACG RALTA_A2456 2604786 - 2604070 - | putative transcriptional Regulator, GntR family TERM 2121 2604982 - 2604937 - H 72 -14.1 -2.77148 | gap 2, overlap 2604934 2604932 GGGACGAAGAGATGA GGTGCGGCGGGCGTTCCCTGC CTCCCC GCAAGGAACGCCCGC-GC-CT GAAAGAACTGCCGGT TERM 2122 2605488 - 2605508 + H 82 -3.2 -5.1675 | gap 1 TTGAAACAGCGTTTG CCATCACGG ATTA CCG-GCTGG TTTTTTCCTGAATCG TERM 2123 2606383 - 2606362 - g 79 -14.5 -3.32844 | opp_overlap 2606379, overlap 2606382 GGCGCGACTGCAGAA CGTGGTGTG GAGC CACACCACG CTGGCGCCGCACGCG RALTA_A2457 2605550 - 2606641 + | conserved hypothetical protein, DUF89; putative TRANSMEMBRANE PROTEIN RALTA_A2458 2606648 - 2607667 + | putative Peptidase, M48 Ste24p family; putative TRANSMEMBRANE PROTEIN lgt 2608519 - 2607701 - | phosphatidylglycerol-prolipoprotein diacylglyceryl transferase TERM 2124 2608751 - 2608707 - H 83 -13.3 -3.91032 | overlap 2608708 TAATGATGTCACAAA TCCGCGCCGCGCCCGGCAAGC CCG GCCTGCCGGCCGGGGCCCGCC AGTGCGCGAACAATC TERM 2125 2608750 - 2608708 - H 83 -16.8 -2.94137 | overlap 2608707 AATGATGTCACAAAT CCGCGCCGCGCCCGGCAAGC CCG GCCTGCCGGCCGGGGCCCGC CAGTGCGCGAACAAT ilvD 2608866 - 2610539 + | dihydroxyacid dehydratase RALTA_A2462 2611206 - 2610706 - | hypothetical protein holC 2611637 - 2611203 - | DNA POLYMERASE III, CHI SUBUNIT pepA 2613222 - 2611672 - | aminopeptidase A, a cyteinylglycinase TERM 2126 2613099 - 2613118 + g 74 -13.6 -3.36492 | TGGCCACATCGAGGG CCTTGGCG ACGC CGCCAAGG TTCTGGCCTTCGAAC RALTA_A2465 2613410 - 2614540 + | putative permease, YjgP/YjgQ family RALTA_A2466 2614537 - 2615715 + | putative permease, YjgP/YjgQ family cbiX 2615724 - 2616119 + | Sirohydrochlorin cobaltochelatase, Cobalamin (Vitamin B12) biosynthesis anaerobic pathway TERM 2127 2616140 - 2616174 + T 100 -12.8 -5.24129 | opp_overlap 2616144, overlap 2616144 TGACGACGTCAATGA AAAACCCCGTGCCGGA GTA TCCGCCACGGGGTTAG TTTTTTCTGCAAGAC TERM 2128 2616170 - 2616144 - T 100 -18 -4.87291 | opp_overlap 2616140 2616144 GACGTCAATGAAAAA CCCCGTGCCGGA GTA TCCGCCACGGGG TTAGTTTTTTCTGCA TERM 2129 2616144 - 2616170 + T 100 -18 -3.99236 | opp_overlap 2616144, overlap 2616140 GACGTCAATGAAAAA CCCCGTGCCGGA GTA TCCGCCACGGGG TTAGTTTTTTCTGCA cysG 2617046 - 2616246 - | UROPORPHYRINOGEN-III C-METHYLTRANSFERASE PROTEIN TERM 2130 2616582 - 2616629 + g 78 -12.7 -3.73072 | gap 2, opp_overlap 2616606 2616607 CGAGCCCTCGCCGTC CGCGGCCT-TGGC-CTGCGTGGC AAAG GCCACGCTGCGCGACACGCCGCG TTTGGTCAGCGGCTT cysN 2618389 - 2617085 - | ATP-sulfurylase, subunit 1 (ATP:sulfate adenylyltransferase) cysD2 2619485 - 2618520 - | ATP-sulfurylase, subunit 2 (ATP:sulfate adenylyltransferase) cysH 2620301 - 2619498 - | Phosphoadenosine phosphosulfate reductase TERM 2131 2620163 - 2620141 - G 75 -9 -4.15044 | opp_overlap 2620125 2620160, overlap 2620125 CGCGCGCGGAAGAAA CGGCCGGCGA TAC CCGCCAGGCG CTCGGCCAGCTCGCG RALTA_A2472 2620882 - 2620298 - | conserved hypothetical protein, DUF93 cysI 2622583 - 2620901 - | Sulfite reductase, beta subunit (hemoprotein) TERM 2132 2621968 - 2622008 + g 71 -9.6 -3.79906 | gap 1, overlap 2621969 GCGTACGGCCCAGGC CGCCGCCGGCCAGGATGCG CAGG CGCA-CTTCGCCGTCGGCA TTCTTGTAGGCGTAG RALTA_A2474 2623385 - 2622612 - | conserved hypothetical protein, DUF81; putative TRANSMEMBRANE PROTEIN TERM 2133 2622828 - 2622846 + g 70 -13.1 -3.26471 | GTAGGCAATGTCGGT GCCGGCC ACTTC GGCCGGC TTCATGTGGGGATAC cysB 2623547 - 2624488 + | transcriptional regulator of biosynthesis of L-cysteine and regulator of sulfur assimilation (LysR family) TERM 2134 2624631 - 2624612 - g 73 -7 -4.1899 | overlap 2624613 2624626 CCACTGGACGGAAAA CGGCGTCG AGCA CAGCGCCG CCTGGCGCTCCGAGG TERM 2135 2624793 - 2624762 - g 74 -13.7 -3.31144 | gap 1, overlap 2624763 GGGCGATTTCCAGAA CGCGCGCCAGCTGC TGAAC GC-GCTGGCGCGCC GCACCGAGCGCAAGC TERM 2136 2624792 - 2624763 - g 77 -17.2 -2.58544 | gap 1, overlap 2624762 GGCGATTTCCAGAAC GCGCGCCAGCTGC TGAAC GC-GCTGGCGCGC CGCACCGAGCGCAAG TERM 2137 2624832 - 2624816 - g 81 -7.2 -4.66833 | GCGCAAGCCCAAAAA GGCCAG CCGCC CCGGCC ACAAGGCCCGGGACA RALTA_A2476 2624577 - 2625734 + | putative methyltransferase, putative Methylase of polypeptide chain release factors TERM 2138 2626093 - 2626074 - g 78 -9.2 -4.2558 | GATCTCCGAGGAAAA GGTCGACG TGAT CGTCGGCC CCAACATCACGCCCA RALTA_A2477 2625817 - 2626980 + | putative branched-chain amino acid ABC transporter, periplasmic component garR 2627033 - 2627914 + | tartronate semialdehyde reductase (TSAR) RALTA_A2479 2628855 - 2627935 - | putative Esterase/lipase RALTA_A2480 2629306 - 2629166 - | hypothetical protein RALTA_A2481 2629614 - 2629303 - | conserved hypothetical protein; putative transcription factor, COG3636 RALTA_A2482 2629945 - 2629595 - | conserved hypothetical protein, DUF891 COG3657 TERM 2139 2630395 - 2630340 - g 90 -13.9 -4.03888 | gap 1, overlap 2630342 2630343 GATGGACAAGAAGAA CAC-CATCGCGCCGGCCAGCAGCCCC TACGC GCGGCGGCTGGCCACCGTGATGAGCG GCCTGGGCAATACCG TERM 2140 2630392 - 2630342 - g 83 -15.3 -3.60364 | overlap 2630340 2630343 TGGACAAGAAGAACA CCATCGCGCCGGCCAGCAGCCCC TACGC GCGGCGGCTGGCCACCGTGATGA GCGGCCTGGGCAATA TERM 2141 2630391 - 2630343 - g 74 -16.6 -2.75496 | overlap 2630342 2630340 GGACAAGAAGAACAC CATCGCGCCGGCCAGCAGCCCC TACGC GCGGCGGCTGGCCACCGTGATG AGCGGCCTGGGCAAT TERM 2142 2630607 - 2630577 - g 79 -15.4 -3.25823 | opp_overlap 2630605 GCTGGGCCACACCAA GGCGGCGATGCAGG TGG CCTACACCGCGGCC GCGGCGCGCGGCTTG TERM 2143 2630793 - 2630766 - g 71 -9.8 -3.71848 | gap 1 CCTGCTGACGAAGAA CGGCGCCAACCGC CAG GCG-CTGGCGTCG GCCTTCCGCAAGATG RALTA_A2483 2630164 - 2630907 + | putative Peptidase M48, Ste24p family; putative exported protein RALTA_A2485 2631264 - 2632949 + | conserved hypothetical protein, YidE/YbjL duplication; putative membrane protein RALTA_A2486 2633043 - 2634668 + | putative Aminotransferase, Putative aspartate decarboxylase TERM 2144 2634690 - 2634708 + T 100 -13.1 -5.48063 | ACCGGCAGGCCAGGG GCCCGGC ATTGC GCCGGGC TTTTTTGTGTTCAGT hutG1 2635583 - 2634771 - | N-formylglutamate deformylase hutF 2637026 - 2635617 - | Formiminoglutamate deiminase TERM 2145 2636908 - 2636876 - G 74 -15.6 -3.09327 | gap 2 GCATGCCAGGCAACA CCGG-GCCGGC-CGCC CGC GGCACGCCGGCGCCGG GCGCCGTCCCCGCCT hutI 2638276 - 2637023 - | Imidazolonepropionase (Imidazolone-5-propionate hydrolase) RALTA_A2490 2638875 - 2638273 - | conserved hypothetical protein, DUF886; similar to Hypothetical 21.2 kDa protein in hutC 3'region in Pseudomonas putida TERM 2146 2638771 - 2638813 + g 83 -15.5 -3.61715 | gap 1, overlap 2638772 GTCATCCATGCCGGC AGCCGGCGGCCACAC-CGCG AGCT CGCGCGTGTTGCCGCCGCCG TTCTTCCAGCGCGTG TERM 2147 2638772 - 2638812 + g 81 -19 -2.76815 | gap 1, overlap 2638771 TCATCCATGCCGGCA GCCGGCGGCCACAC-CGCG AGCT CGCGCGTGTTGCCGCCGCC GTTCTTCCAGCGCGT hutU1 2640572 - 2638872 - | Urocanate hydratase (Urocanase) (Imidazolonepropionate hydrolase) TERM 2148 2639365 - 2639422 + g 70 -3.4 -4.45485 | overlap 2639366 CGGTCGTGCGCCATG TCGA-GCCAGCGGTGCAGGTGCTTGTCC TCGG GGAACAGCTCCTTCATC-TTGGCGTCGG TTTTGTAGATGTCCT hutH 2642233 - 2640659 - | Histidine ammonia-lyase (Histidase) hutC1 2643071 - 2642310 - | HISTIDINE UTILIZATION REPRESSOR, TRANSCRIPTIONal REGULATOR GntR family RALTA_A2494 2643857 - 2643078 - | putative ABC-type transporter, ATP_binding component RALTA_A2495 2644720 - 2643854 - | putative ABC-type transporter, membrane component RALTA_A2496 2645717 - 2644749 - | putative ABC-type transporter, periplasmic binding component TERM 2149 2645528 - 2645541 + g 82 -3.7 -5.07486 | GGATCATCTTGATTT CGACG TCGA CGCCG TTTTTCTTGAAGATG TERM 2150 2646009 - 2645988 - R 70 -12.3 -3.18264 | gap 1, overlap 2645989 GCCGTGAGTCAGCAA GCCCCGTGCC AGC GGCACGG-GC ACCACGATGGAGGTA RALTA_A2497 2647041 - 2646025 - | putative OXIDOREDUCTASE PROTEIN RALTA_A2498 2647051 - 2648109 + | putative Ferredoxin--NAD(+) reductase TERM 2151 2648295 - 2648327 + F 100 -14.2 -5.74684 | opp_overlap 2648301, overlap 2648301 TGCGTCTGTTCATGT CAACGAGCCACGGG CAACC CCCGTGGCTTTTTG TTTTTGTTTTTGTTC TERM 2152 2648321 - 2648301 - f 72 -14 -2.73364 | opp_overlap 2648301 2648295 TGTTCATGTCAACGA GCCACGGG CAACC CCCGTGGC TTTTTGTTTTTGTTT TERM 2153 2648301 - 2648321 + F 100 -14 -5.77734 | opp_overlap 2648301, overlap 2648295 TGTTCATGTCAACGA GCCACGGG CAACC CCCGTGGC TTTTTGTTTTTGTTT argM 2648401 - 2649588 + | succinylornithine transaminase, also has acetylornitine transaminase activity, PLP-dependent TERM 2154 2649611 - 2649643 + T 100 -20.8 -3.53444 | opp_overlap 2649618, overlap 2649618 GGGTATCCGCGGACA GCAAAAAGCCTCGC ATTGC GCGAGGCTTTTTGC TTTGCGGCCGGATCC TERM 2155 2649636 - 2649618 - T 100 -12.4 -4.8048 | opp_overlap 2649611 2649618 CGCGGACAGCAAAAA GCCTCGCA TTG CGCGAGGC TTTTTGCTTTGCGGC TERM 2156 2649618 - 2649636 + T 100 -11.7 -4.98531 | opp_overlap 2649618, overlap 2649611 CGCGGACAGCAAAAA GCCTCGC ATTGC GCGAGGC TTTTTGCTTTGCGGC TERM 2157 2649737 - 2649706 - T 82 -14.5 -3.29511 | GCCAGCGCCGCAGAA CCGGTGCA-GCCGGC CGGA GCCGGCCTGC-CCGG GACCCCGCGGCAAGG TERM 2158 2649826 - 2649840 + T 73 -12.8 -3.14344 | GGTGTCGGAGCCGGA GCGGCG GCG CGCCGC TTACTCGCCCAGGTA livF2 2650572 - 2649841 - | high-affinity branched-chain amino acid transport protein, ABC superfamily, atp_binding component livG2 2651366 - 2650590 - | high-affinity branched-chain amino acid transport protein, ABC superfamily, atp_binding component livM2 2652537 - 2651380 - | high-affinity branched-chain amino acid transport protein, ABC superfamily, membrane component livH2 2653486 - 2652551 - | high-affinity branched-chain amino acid transport protein,ABC superfamily, membrane component TERM 2159 2653677 - 2653645 - R 100 -17.1 -4.62336 | AGGCGAGGCTAAAAA GAACGGCACCGCAAA ATA CTCACGGTGCCGTTC GGATGGGCCGGTAAG RALTA_A2504 2654910 - 2653699 - | putative branched amino acids ABC transporter, periplasmic binding component TERM 2160 2655307 - 2655294 - R 71 -5.9 -4.30441 | opp_overlap 2655287, overlap 2655287 CCATAATAGGGAAAA CCCCA GCTT CGGGG ATTACCCTGATTAGC TERM 2161 2655393 - 2655414 + r 100 -18.7 -4.36914 | opp_overlap 2655393 AGCGGGAAACAAAAA GGGCGCCGC GACT GCGGCGCCC TTTTATCAGGCAAGG TERM 2162 2655414 - 2655393 - R 100 -18.7 -5.27938 | opp_overlap 2655393 AGCGGGAAACAAAAA GGGCGCCGC GACT GCGGCGCCC TTTTATCAGGCAAGG ispH 2656423 - 2655458 - | 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate reductase, 4Fe-4S protein TERM 2163 2656337 - 2656389 + g 93 -15.8 -3.92373 | gap 3, opp_overlap 2656367 CGCGCGCTCGACGAT TTC-GATGGCGCGGTCCACGCCGGC ACAGAA GCC-GCGTGG-CTGCGCCATCAGGA TTTCTGCGTCGGGTA fkpB 2656949 - 2656461 - | FKBP-type peptidyl-prolyl cis-trans isomerase (rotamase) TERM 2164 2657110 - 2657097 - g 71 -2.3 -4.56597 | opp_overlap 2657108, overlap 2657107 CGGCCCCGCGAAAAA CTGCT GGAA AGCGG CGCTGCCGCCCTGTC radC 2657052 - 2657738 + | DNA repair protein radC homolog, associated with replication fork rpmB 2657929 - 2658162 + | 50S ribosomal subunit protein L28 rpmG 2658176 - 2658346 + | 50S ribosomal subunit protein L33 TERM 2165 2658389 - 2658370 - f 81 -12.1 -3.86346 | opp_overlap 2658370 GTATCCCGCCAGAAA GCCCCGC CCTGTT GCGGGGC TTTTTGTTGCCCATC TERM 2166 2658370 - 2658389 + F 100 -12.1 -5.07486 | opp_overlap 2658370 GTATCCCGCCAGAAA GCCCCGC CCTGTT GCGGGGC TTTTTGTTGCCCATC nadB 2658510 - 2660102 + | quinolinate synthetase, B subunit, L-aspartate oxidase TERM 2167 2660125 - 2660151 + T 90 -15.9 -3.81146 | gap 1, opp_overlap 2660125 TTTGCCAGGCAAAAA CGGGGTGGCGCC GCAT GGC-CCACCCCG TTATTCGTTCGGCCG TERM 2168 2660151 - 2660125 - T 100 -15.9 -4.65895 | gap 1, opp_overlap 2660125 TTTGCCAGGCAAAAA CGGGGTGGCGCC GCAT GGC-CCACCCCG TTATTCGTTCGGCCG nadC 2661039 - 2660176 - | quinolinate phosphoribosyltransferase TERM 2169 2660470 - 2660509 + g 100 -15 -4.45544 | gap 1 GAGCGCCAGCGCCGC CCGCATCGCCGCG-CCGAT GCT ACCGGCCGCGGCGATATGG TTTTCCTTGATCAGG nadA 2662190 - 2661036 - | quinolinate synthetase, A protein TERM 2170 2662118 - 2662128 + g 72 -8.2 -4.07568 | opp_overlap 2662079 2662113 GGGCCACACAGCTGG CGCC AGC GGCG TTTTGGGCACCCGCC TERM 2171 2662284 - 2662266 - R 100 -17.4 -5.10933 | opp_overlap 2662266, overlap 2662240 TTATCTAAAACAAAA GCCCCGCC ATG GGCGGGGC TTTGTCAAACCATAC TERM 2172 2662266 - 2662284 + r 100 -17.4 -3.86346 | opp_overlap 2662240 2662266 TTATCTAAAACAAAA GCCCCGCC ATG GGCGGGGC TTTGTCAAACCATAC RALTA_A2514 2663507 - 2662317 - | putative fatty acid desaturase TERM 2173 2662511 - 2662543 + g 86 -12 -4.16842 | gap 1, overlap 2662514 GCTCGACGATGCTTG CCA-GCTGCTCGCGC TGCT GCGCGGCCAGCTTGG TTTCTTCGCGGTGGA TERM 2174 2662514 - 2662539 + g 78 -12.5 -3.68738 | overlap 2662511 CGACGATGCTTGCCA GCTGCTCGCGC TGCT GCGCGGCCAGC TTGGTTTCTTCGCGG RALTA_A2515 2665251 - 2663857 - | putative Mechanosensitive ion channel, MscS family TERM 2175 2665155 - 2665141 - G 81 -3.5 -4.8543 | gap 1, overlap 2665142 2665143 CAATTGCCAGAAAAA GCCGGG GCCG CCCG-C ATCACGGACCAGGTC rsmB2 2666713 - 2665310 - | Ribosomal RNA small subunit methyltransferase B (rRNA (cytosine-C(5)-)-methyltransferase) (16S rRNA m5C967 methyltransferase) TERM 2176 2666642 - 2666690 + g 74 -11.6 -3.767 | gap 2, overlap 2666634 2666667 GCGGATCGGGCTGCT CTTGCCCTTGCTGCGCGCGGGGGC GCG GCCCTCGC-CGC-GCGGGGACCGG TTTCCTGCCTGGGTA purN 2667378 - 2666710 - | phosphoribosylglycinamide formyltransferase 1 vsrC 2667632 - 2668291 + | response regulator, LuxR family TERM 2177 2668319 - 2668292 - T 73 -12.6 -3.14132 | opp_overlap 2668306 2668307 CGGCTGCGCCAGTAA GGCGAGCCACCG CCTT CGACGGCGCGCC CGGGCACGCCGGCGG vsrB 2670200 - 2668341 - | sensor hybrid histidine kinase TERM 2178 2670340 - 2670308 - g 85 -11.8 -4.36914 | GGTTGCGGCACAAAA GCCGCAGCGCCGGG ACCGG CCGGGGGCGGCGGC AGCGGCAAGCCGACC TERM 2179 2671298 - 2671315 + G 72 -3.3 -4.59773 | gap 1, opp_overlap 2671299, overlap 2671299 GCGATCGCCAAGGAC AGCGC-CG ACG CGCGCGCC TTTTTCGGCCTGACG ribF 2670254 - 2671411 + | bifunctional: flavokinase; FAD synthetase TERM 2180 2672938 - 2672883 - g 73 -12.5 -3.40403 | CCCGGCCGAGGAGAA CGGCAA-GCCGGTGCCGACCCTGCGCG AGAC CGCGCTGG-CCGGCATCGACGCCACCG AGTTCTACCCGGCCT ileS 2671531 - 2674431 + | isoleucine tRNA synthetase lspA 2674431 - 2674961 + | prolipoprotein signal peptidase (SPase II) dfp 2675008 - 2676210 + | bifunctional: 4'-phosphopantothenoylcysteine decarboxylase; phosphopantothenoylcysteine synthetase, FMN-binding dut 2676237 - 2676737 + | deoxyuridinetriphosphatase TERM 2181 2676764 - 2676785 + T 86 -13.7 -3.84451 | opp_overlap 2676761 2676764 CCCCGGCATGAAGGA CTGGCGCTC CGCG GGGCGCCAG TTTGCATTTCAGCCC RALTA_A2525 2677624 - 2676794 - | hypothetical protein RALTA_A2526 2678694 - 2677687 - | conserved hypothetical protein, UPF0065 TERM 2182 2678767 - 2678735 - R 100 -15.5 -4.37092 | opp_overlap 2678737 2678739 2678740, overlap 2678740 ACGGCCGGGACAAAA GAGAACGGGGCGGCC AGT GGCCGCCCCGCTATT TTGCCCGATGATCGA TERM 2183 2678737 - 2678765 + r 95 -15.9 -4.10161 | opp_overlap 2678735 2678740, overlap 2678739 2678740 GGCCGGGACAAAAGA GAACGGGGCGGCC AGT GGCCGCCCCGCTA TTTTGCCCGATGATC TERM 2184 2678739 - 2678763 + r 100 -18.5 -3.64716 | opp_overlap 2678735 2678740, overlap 2678737 2678740 CCGGGACAAAAGAGA ACGGGGCGGCC AGT GGCCGCCCCGC TATTTTGCCCGATGA TERM 2185 2678740 - 2678762 + r 100 -22 -2.78508 | opp_overlap 2678735 2678740, overlap 2678739 2678737 CGGGACAAAAGAGAA CGGGGCGGCC AGT GGCCGCCCCG CTATTTTGCCCGATG TERM 2186 2678762 - 2678740 - R 100 -22 -4.02581 | opp_overlap 2678740 2678739 2678737, overlap 2678735 CGGGACAAAAGAGAA CGGGGCGGCC AGT GGCCGCCCCG CTATTTTGCCCGATG clpA 2681108 - 2678814 - | ATP-dependent specificity subunit of clpA-clpP serine protease TERM 2187 2680865 - 2680912 + g 72 -13.4 -3.21924 | gap 1, opp_overlap 2680864 2680865 2680868, overlap 2680864 TCACGCGCTGGAAAC CGAGCGTGG-GCTGGGTATCGAC CTC GTCGGTACCCGGCACCACCGGCG TGTTGTCCGCGATGA clpS 2681431 - 2681105 - | ATP-dependent Clp protease substrate specificity regulator TERM 2188 2681419 - 2681434 + g 72 -6.8 -4.31835 | GTGGGACATTCGCAA GCCGTG TAGC CATGGC TTTATTCTAACCCTT TERM 2189 2681495 - 2681505 + H 76 -8.2 -4.10925 | GGTGGATTCAAGAGT CCGG CCA CCGG TTTTCCGAGGTCTAT cspE 2681940 - 2682146 + | cold shock protein, RNA chaperone, transcription antiterminator, affects expression of rpoS and uspA TERM 2190 2682302 - 2682333 + T 100 -13.1 -4.56775 | gap 1, opp_overlap 2682308, overlap 2682303 2682304 2682308 GGCACGCACACCCCA TC-GAAAGCCCGGC CTGGC GCCGGGCTTTCTGG TTTTTGGGCCGGCCT TERM 2191 2682303 - 2682332 + T 82 -14.4 -3.33744 | gap 1, opp_overlap 2682308, overlap 2682302 2682304 2682308 GCACGCACACCCCAT C-GAAAGCCCGGC CTGGC GCCGGGCTTTCTG GTTTTTGGGCCGGCC TERM 2192 2682304 - 2682330 + T 91 -18.1 -3.23708 | opp_overlap 2682308, overlap 2682303 2682302 2682308 CACGCACACCCCATC GAAAGCCCGGC CTGGC GCCGGGCTTTC TGGTTTTTGGGCCGG TERM 2193 2682308 - 2682326 + T 95 -13.1 -4.2687 | opp_overlap 2682308, overlap 2682304 2682303 2682302 CACACCCCATCGAAA GCCCGGC CTGGC GCCGGGC TTTCTGGTTTTTGGG TERM 2194 2682326 - 2682308 - T 77 -13.1 -3.66378 | opp_overlap 2682308 2682304 2682303 2682302 CACACCCCATCGAAA GCCCGGC CTGGC GCCGGGC TTTCTGGTTTTTGGG RALTA_A2530 2682836 - 2682375 - | putative Glyoxalase/dioxygenase TERM 2195 2682912 - 2682943 + r 84 -15.9 -3.31322 | opp_overlap 2682914, overlap 2682914 CGGGCGGCAAGAAAA AACCCCGGTACCG TGGATC CGGTACCGGGGTC TTCTAGACAGTTCGC TERM 2196 2682941 - 2682914 - R 100 -18.5 -5.4505 | opp_overlap 2682912 2682914 GGCGGCAAGAAAAAA CCCCGGTACCG TGGATC CGGTACCGGGG TCTTCTAGACAGTTC TERM 2197 2682914 - 2682941 + r 91 -18.5 -3.224 | opp_overlap 2682914, overlap 2682912 GGCGGCAAGAAAAAA CCCCGGTACCG TGGATC CGGTACCGGGG TCTTCTAGACAGTTC icd 2684231 - 2682981 - | Isocitrate (NADP) dehydrogenase rluE 2684507 - 2685169 + | 23S rRNA pseudouridine synthase RALTA_A2533 2685277 - 2685477 + | conserved hypothetical protein; putative exported protein; putative Acid shock protein TERM 2198 2685551 - 2685519 - f 81 -11.9 -3.85817 | opp_overlap 2685523, overlap 2685523 AGCCGGCGGTAGAAA GCAAGGCAGGCGGCC ACC GGGCGCCTGCCTTTT TTATTTCGCGTCGGT TERM 2199 2685523 - 2685547 + F 100 -17.1 -5.64421 | opp_overlap 2685519 2685523 GGCGGTAGAAAGCAA GGCAGGCGGCC ACC GGGCGCCTGCC TTTTTTATTTCGCGT TERM 2200 2685547 - 2685523 - f 100 -17.1 -3.6053 | opp_overlap 2685523, overlap 2685519 GGCGGTAGAAAGCAA GGCAGGCGGCC ACC GGGCGCCTGCC TTTTTTATTTCGCGT TERM 2201 2685560 - 2685598 + F 74 -11.7 -3.51329 | gap 1, overlap 2685564 GCCTTTTTTATTTCG CGTCGGTTGCACCGCGCG CGGC CGCG-GGTGCAACGTGCG TTATGCTTGCGGCTG RALTA_A2534 2685645 - 2686097 + | putative lipoprotein RALTA_A2535 2686630 - 2686145 - | conserved hypothetical protein, DUF520 TERM 2202 2686810 - 2686821 + G 73 -7.2 -4.15006 | TACATTCGGATTCGA CGCG CGCG CGCG TTTTGCGGTGCATGT murB 2686754 - 2687773 + | UDP-N-acetylenolpyruvoylglucosamine reductase, FAD-binding TERM 2203 2687774 - 2687804 + T 70 -12.4 -3.14051 | overlap 2687772 CCGGTGGTGCTGTAA CGCCGCGGGCCAGC CCG GCTGGCCCCCTGCC TGTTACTCGAAGTGG RALTA_A2537 2688124 - 2687807 - | conserved hypothetical protein, DUF1255 TERM 2204 2688176 - 2688156 - R 100 -14.7 -4.70266 | opp_overlap 2688153 AATAGGACGTAAAAA GAGGGGCCA TCG CGGCCCCTC CCCTGTTCACCCCGG RALTA_A2538 2689121 - 2688198 - | putrescine carbamoyltransferase TERM 2205 2689442 - 2689426 - H 73 -6.5 -4.25104 | CCGCCGGCATCAAAA GTGCCCC TGC AGGACAC CGACGCCCCGCCTTC RALTA_A2539 2689565 - 2689864 + | hypothetical protein TERM 2206 2689891 - 2689908 + T 100 -11.3 -5.88565 | opp_overlap 2689891 CCGGAAAGCAAAAAA GCTCGTC GGAT GACGAGC TTTTTTTATTGTCGG TERM 2207 2689908 - 2689891 - T 100 -11.3 -5.37593 | opp_overlap 2689891 CCGGAAAGCAAAAAA GCTCGTC GGAT GACGAGC TTTTTTTATTGTCGG rpsT 2690257 - 2689991 - | 30S ribosomal subunit protein S20 RALTA_A2541 2690579 - 2692129 + | conserved hypothetical protein, mviN family RALTA_A2542 2692221 - 2693069 + | conserved hypothetical protein, COG2912 RALTA_A2543 2693769 - 2693104 - | conserved hypothetical protein, dedA family; putative integral membrane protein mutL 2693923 - 2695905 + | methyl-directed mismatch repair protein miaA 2695941 - 2696909 + | delta(2)-isopentenylpyrophosphate tRNA-adenosine transferase TERM 2208 2697099 - 2697081 - g 75 -5.9 -4.4261 | GGCCGAATACGAAAA GCTGACC CATCT GGTCGGC GCCACGCCGCAGAAG RALTA_A2546 2696989 - 2697501 + | putative ACETYLTRANSFERASE, GCN5-related N-acetyltransferase RALTA_A2547 2697599 - 2698342 + | putative TRANSCRIPTIONal REGULATOR, GntR family TERM 2209 2698330 - 2698351 + T 89 -17.3 -3.17075 | CCTGGAAGCGGTGTT CGCCGCGGT CTGA ACCGCGGCG TTACCTTGAAAGCAA TERM 2210 2698384 - 2698363 - T 73 -10.9 -3.57144 | gap 1, overlap 2698364 GGCGTTACCTTGAAA GC-AAGCCGC TGC GCGGCTTAGC GGTGCTCGATGCGCG RALTA_A2548 2699123 - 2698380 - | putative hydantoin racemase RALTA_A2549 2700523 - 2699132 - | putative Amidase TERM 2211 2699444 - 2699429 - G 91 -8.2 -5.06103 | ATAACGGGTAAAAAA GCCGGC CACG GCCAGC GCGATCTGGCGGCTG hyuA 2702002 - 2700566 - | phenylhydantoinase TERM 2212 2701989 - 2702009 + g 77 -3.9 -4.77165 | overlap 2701990 TTGCGGATGATGAGG TCGAACTGT TTC ACGGTACGG TTTTGTTGTGAGGAC RALTA_A2551 2703371 - 2702043 - | putative transporter protein, MFS family TERM 2213 2703399 - 2703432 + r 76 -13.1 -3.48276 | gap 1 ATGGTCCCTGGCCTG CCCGCTGCGCA-CCGG TCG CCGGATGCGCGCTGGG TTGTCTCCGACGGGG TERM 2214 2703674 - 2703649 - R 100 -20.5 -5.86965 | opp_overlap 2703649 ACGGACGAAAAAAAA CGGCGCATGCC CGAA GGCATGCGCCG TTTTCTGCGTGAAAC TERM 2215 2703649 - 2703674 + r 100 -20.5 -4.42386 | opp_overlap 2703649 ACGGACGAAAAAAAA CGGCGCATGCC CGAA GGCATGCGCCG TTTTCTGCGTGAAAC purM 2704754 - 2703702 - | phosphoribosylaminoimidazole synthetase (AIR synthetase) TERM 2216 2703950 - 2703975 + g 75 -8.2 -4.18018 | GCAGCACCGCCGTGA CGTCCTGCGC CAGCAC GCGCGGCACG TTTTCGGTCAGGCCG RALTA_A2553 2704943 - 2706016 + | conserved hypothetical protein, DUF20; putative PERMEASE TRANSMEMBRANE TRANSPORT PROTEIN hda 2706080 - 2706787 + | regulatory factor involved in inactivation of DnaA; putative ATPase RALTA_A2555 2706850 - 2707524 + | putative Phosphoserine phosphatase pcnB 2707526 - 2709049 + | poly(A) polymerase I folK 2709050 - 2709589 + | 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase RALTA_A2558 2709645 - 2710286 + | putative DEOXYGUANOSINE/Deoxyadenosine KINASE TERM 2217 2710373 - 2710321 - f 76 -9 -4.02093 | gap 2, overlap 2710313 2710322 2710324 2710368 GACACAACACAATAA CGACGGC-T-GTCGCTGCCGTGCGGG CTG CCCTCCCGGCACCGGCAAAGCCGTCC TACACGGGCACTGCC TERM 2218 2710372 - 2710322 - f 71 -12.5 -3.00171 | gap 2, overlap 2710313 2710321 2710324 2710368 ACACAACACAATAAC GACGGC-T-GTCGCTGCCGTGCGGG CTG CCCTCCCGGCACCGGCAAAGCCGTC CTACACGGGCACTGC panB 2710389 - 2711210 + | 3-methyl-2-oxobutanoate hydroxymethyltransferase RALTA_A2560 2711215 - 2711913 + | putative binding protein dependent TRANSPORTER, membrane component RALTA_A2561 2711910 - 2712608 + | putative ATP-BINDING ABC TRANSPORTER, ATP-BINDING component pabB 2714542 - 2712617 - | Anthranilate/para-aminobenzoate synthase component I TERM 2219 2713788 - 2713831 + g 74 -11.4 -3.72695 | overlap 2713788 2713792 GCCAGCGCGGCGGCC GCCTGCGCATCGCGCGCGGG ATCG CCGGCGCGCGGCGCGGTGCC TTTCATCGGCCGCGT TERM 2220 2714721 - 2714744 + r 81 -15.3 -3.05384 | opp_overlap 2714721 CCCCCAAAAACAAAA CCGGCCACG CTCGCA CGTGGCCGG TTCCCTACCGCAAGC TERM 2221 2714744 - 2714721 - R 100 -16 -5.26119 | opp_overlap 2714721 CCCCCAAAAACAAAA CCGGCCACGC TCGC ACGTGGCCGG TTCCCTACCGCAAGC dnaJ 2715897 - 2714764 - | heat shock protein (Hsp40), co-chaperone with DnaK TERM 2222 2715657 - 2715616 - G 74 -12.2 -3.55548 | gap 1, overlap 2715596 2715606 GAAGATGTCGCCAAA GGCCTCGGCGAAGCCGCCG TAGCC CTGCG-CGCCGCCGAAGCC GCCCGCCATGTTCGG TERM 2223 2716014 - 2715960 - R 100 -15.8 -5.27779 | gap 3, opp_overlap 2715977 2716011 GCGAATAGCAAAAAA GCCGAGCG-CGG-CATCCGA-CGGCGG TTTC CCGCGGGTCTGATGGCCGTCGCCCGGC GTCGGGGCGGGAGCG dnaK 2718012 - 2716069 - | chaperone Hsp70 in DNA biosynthesis/cell division TERM 2224 2716272 - 2716288 + g 77 -15.1 -3.11178 | overlap 2716267 CGATCTCGGTCTTGT CGCCGCC GCG GGCGGCG TCTTCCAGTTCCTTG TERM 2225 2716303 - 2716318 + g 72 -4.7 -4.48987 | GTCTTCCAGTTCCTT GATCG CGGCTT CGATC TTTTCCTTCTCGCCG TERM 2226 2716494 - 2716519 + g 70 -3.2 -4.41494 | gap 1, overlap 2716510 CGTCTTCCGACAGGC CCGAGTTCGCC TTGAT GGTGATC-CGG TTTTCCTTGCCGGTC RALTA_A2565 2718779 - 2718225 - | putative Cob(I)yrinic acid a,c-diamide adenosyltransferase dld 2719087 - 2720517 + | D-LACTATE DEHYDROGENASE (CYTOCHROME) OXIDOREDUCTASE PROTEIN RALTA_A2567 2720542 - 2721432 + | putative transcription regulator, LysR family TERM 2227 2721889 - 2721912 + G 70 -12.4 -3.35679 | opp_overlap 2721874 TCGCTCGGGTTCGAA CGCTTCGGGC TGGA GCCGGAAGCG TTGTACGTCGCGCCG TERM 2228 2722000 - 2721942 - g 73 -12.3 -3.41051 | gap 2, opp_overlap 2721963 2721996 GCACTTCCACGACAA GCTGGACATGGTGCTGCGGCTGCCGGCCG CCC CGG-CG-CAGCCGCAACGCTGAGTCCGGC ACCCGGCTTTCCGGG RALTA_A2568 2721445 - 2721993 + | putative acetyltransferase, GCN5-related N-acetyltransferase family glcD 2722239 - 2723756 + | Glycolate oxidase subunit glcD TERM 2229 2723805 - 2723861 + G 100 -30.4 -2.73875 | opp_overlap 2723801 2723802, overlap 2723806 AGCACCAGGAAGCGG TGGTGCGCCAGCGCCTGG-GCCAGCCGG AGG CCGGCTGGCGCCA-GCGCTGGTACACCA TCATCTTCGAGGCCG TERM 2230 2724672 - 2724646 - g 76 -13.6 -3.40403 | GCCGGCCTATCAGAA CGACCGGCCGGA AGT CCCGGGCGGCCG CGATGGCGCGACCGG RALTA_A2570 2723765 - 2724694 + | putative potassium channel family protein glcE 2724724 - 2725827 + | Glycolate oxidase subunit glcE glcF 2725867 - 2727120 + | Glycolate oxidase iron-sulfur subunit RALTA_A2573 2727204 - 2727590 + | putative LrgA homolg; putative regulator of murein hydrolase activity RALTA_A2574 2727590 - 2728312 + | putative LrgB homolog; putative regulator of murein hydrolase activity RALTA_A2575 2728309 - 2728782 + | putative glyoxalase, related to lactoylglutathione lyase (COG3324) RALTA_A2576 2728805 - 2729494 + | putative transcriptional regulator, COG2378 RALTA_A2577 2729992 - 2729498 - | Putative glutathione peroxidase pilU 2731206 - 2730067 - | type IV pilus twitching mobility protein,pilus retraction protein; GSP E family TERM 2231 2731256 - 2731228 - R 71 -8.7 -3.85698 | overlap 2731244 GTCCTGCTGGAGAAA GGGCGAAGGCGCA AGA CGGGCCTCAGCCC ATGAACGCGTCCGGG pilT 2732293 - 2731250 - | Twitching mobility, Pilus retraction protein; GSP E family RALTA_A2580 2732360 - 2733049 + | Conserved hypothetical protein, UPF0001 family; putative racemase proC 2733094 - 2733930 + | Pyrroline-5-carboxylate reductase TERM 2232 2733984 - 2733953 - T 100 -21.6 -3.22223 | CAACGCCAGCAGCAA GCTCCCCTCGCCCG CCTG CGGGAGAGGGGAGC AAACCCTCAGTCAGC ubiA 2734981 - 2734007 - | 4-hydroxybenzoate octaprenyltransferase TERM 2233 2734959 - 2734931 - G 100 -19.6 -4.43477 | GCGATTCAATGAAAA CGCGCCGCAGCC CGGAC GGCTGCGACGCG CTGTACCGGCGGCCG RALTA_A2583 2735491 - 2735006 - | putative DNA-binding protein, dps family TERM 2234 2735621 - 2735641 + r 71 -8.9 -3.85389 | opp_overlap 2735616 2735615, overlap 2735618 2735593 CCGGCCAAACCCCGT GCCGGGCGG CCG TTGCCTGGC TTTCGCTTATTGCAG RALTA_A2584 2737090 - 2735648 - | Catalase TERM 2235 2737473 - 2737434 - R 100 -22.3 -4.06904 | gap 1, opp_overlap 2737440, overlap 2737437 2737440 TCAGGGAAGCAGAAA CGACAACGGCCGCAGCGG CATCT CCGCTGCGGCCGTTG-CA TGGCCAGGTCCTTCG TERM 2236 2737471 - 2737437 - R 100 -27.3 -3.0682 | opp_overlap 2737440, overlap 2737434 2737440 GGGAAGCAGAAACGA CAACGGCCGCAGCGG CATCT CCGCTGCGGCCGTTG CATGGCCAGGTCCTT TERM 2237 2737468 - 2737440 - R 100 -23.2 -3.66589 | opp_overlap 2737440, overlap 2737437 2737434 AAGCAGAAACGACAA CGGCCGCAGCGG CATCT CCGCTGCGGCCG TTGCATGGCCAGGTC TERM 2238 2737440 - 2737468 + r 100 -23.2 -3.05596 | opp_overlap 2737440 2737437 2737434 AAGCAGAAACGACAA CGGCCGCAGCGG CATCT CCGCTGCGGCCG TTGCATGGCCAGGTC oxyR 2738449 - 2737499 - | Hydrogen peroxide-inducible gene activator; Transcriptional regulator, LysR family recG 2740763 - 2738571 - | ATP-dependent DNA helicase TERM 2239 2739941 - 2739979 + g 74 -16 -2.78384 | overlap 2739930 GCATGGTCGGCGCGG TCTTGTCGCGGCGCGC CGCGTGC GCGCGCCGCAGCGAGA TCTGCTGCGCCAGCA queA 2740978 - 2742045 + | S-adenosylmethionine:tRNA ribosyltransferase-isomerase TERM 2240 2743159 - 2743214 + G 71 -11.1 -3.53811 | gap 3 CGACTTCCGCCGCCA GTTCGCCG-CCGACCGCGCGCGCGGCAC GCA GTGAC-CG-GCGCGGCCGGTCCGAGAAC TTTCGCGGCCGTGCC tgt 2742062 - 2743192 + | Queuine tRNA-ribosyltransferase, tRNA-guanine transglycosylase yajC 2743455 - 2743781 + | protein translocase auxillary subunit TERM 2241 2744538 - 2744503 - g 71 -9.6 -3.78934 | overlap 2744506 GCTGCGTGACAAGAA CATCCGCCACGGCGGC ATCG ACCGCGACGGCGAACG CCTGACGGTGCGCTT secD 2743991 - 2745862 + | Protein-export membrane protein secD secF 2745904 - 2746875 + | Protein-export membrane protein TERM 2242 2746925 - 2746896 - T 100 -12.1 -4.62069 | opp_overlap 2746901, overlap 2746901 GCCCGACTGCAAAAA CAGAACGGCGCCC CGCG GGGCGCCGTTTTT CATGGCCAGCCCGAA TERM 2243 2746901 - 2746920 + T 100 -16.4 -4.72272 | opp_overlap 2746896 2746901 ACTGCAAAAACAGAA CGGCGCCC CGCG GGGCGCCG TTTTTCATGGCCAGC TERM 2244 2746920 - 2746901 - T 100 -16.4 -4.08349 | opp_overlap 2746901, overlap 2746896 ACTGCAAAAACAGAA CGGCGCCC CGCG GGGCGCCG TTTTTCATGGCCAGC phcQ 2747953 - 2746946 - | RESPONSE REGULATOR, CheY family; belongs to the pheBSRQ operon that regulates phcA TERM 2245 2747013 - 2747071 + g 71 -11 -3.61398 | gap 3, opp_overlap 2746964, overlap 2747004 2747013 AAGCTCTCGCTGCGC G-GGGCGGCGCGGCAGACGATGGTGTCGC CGTC GCGA-ACGAACTTCAG-CGCGCCGCCCGC TTCTTCCAGCCACAG phcR 2749089 - 2747950 - | RESPONSE REGULATOR, CheY family; repressor of PhcA phcS 2750426 - 2749095 - | SENSOR HISTIDINE KINASE, repressor of PhcA phcB 2751840 - 2750449 - | REGULATORY PROTEIN, putative S-adenosyl-L-methionine-dependent methyltransferase RALTA_A2596 2752151 - 2751966 - | hypothetical protein TERM 2246 2752160 - 2752143 - G 100 -14.1 -5.67283 | AAGGCAAACAAAAAA GGCCGGC ATGG GCCGGCC TTGACAGCAGTTTGC RALTA_A2597 2752787 - 2752197 - | Conserved hypothetical protein, YceI like family (basic pH induced) RALTA_A2598 2753445 - 2752864 - | Conserved hypothetical protein, YceI like family (basic pH induced) RALTA_A2599 2754064 - 2753510 - | putative cytochrome b561 TERM 2247 2754288 - 2754305 + r 73 -11.3 -3.64703 | opp_overlap 2754288 CCAACAAGCAAAAAA GCCATCC CTCG GGATGGC TTTCCGTGAGGGCCG TERM 2248 2754305 - 2754288 - R 100 -11.3 -5.37865 | opp_overlap 2754288 CCAACAAGCAAAAAA GCCATCC CTCG GGATGGC TTTCCGTGAGGGCCG purB 2755723 - 2754347 - | adenylosuccinate lyase RALTA_A2601 2756081 - 2756695 + | putative glutathione S-transferase enzyme with thioredoxin-like domain TERM 2249 2756736 - 2756719 - T 100 -12.7 -5.60993 | opp_overlap 2756719 CCCGTCATAAAAAAA CACCCGC TCGC GCGGGTG TTTTTCCGACCGCAG TERM 2250 2756719 - 2756736 + T 100 -12.7 -4.56597 | opp_overlap 2756719 CCCGTCATAAAAAAA CACCCGC TCGC GCGGGTG TTTTTCCGACCGCAG trmU 2757842 - 2756757 - | tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase RALTA_A2603 2758330 - 2757839 - | putative Nudix hydrolase family protein pntAa 2758570 - 2759697 + | NAD(P) transhydrogenase subunit alpha part 1 panD 2759755 - 2760117 + | aspartate 1-decarboxylase TERM 2251 2760180 - 2760125 - f 82 -14.7 -3.36452 | gap 2, opp_overlap 2760125, overlap 2760111 2760121 AGGTCTGAATATCAA CCCCTGAGGGGTTGCTCCCCTCTCCCG CTTG CGGGAGAGGG-AGCA-CGCCACCGGCG ATTCAAGAGCCACGG pntAb 2760283 - 2760624 + | NAD(P) transhydrogenase subunit alpha part 2 pntB1 2760624 - 2762099 + | NAD(P) transhydrogenase subunit beta RALTA_A2608 2762311 - 2763387 + | putative response regulator receiver isolated domain RALTA_A2609 2764668 - 2763415 - | Putative methyltransferase TERM 2252 2764605 - 2764565 - G 72 -3.7 -4.65895 | opp_overlap 2764592, overlap 2764566 TGGTGCACCGAAAAA GGCGCCAGCGCAGCCATGC CCG GCATCGCGGCGATCTCGCG CAGCTCTTCGGCGAG TERM 2253 2764710 - 2764693 - R 100 -12.7 -5.27335 | TCCTGCAAACAAAAA CGTCCGC CGTG GCGGACG GGGAAGTATCGGTAG RALTA_A2610 2765337 - 2764732 - | Conserved hypothetical protein; Putative Glutathione S-transferase related RALTA_A2611 2765814 - 2765392 - | Conserved hypothetical protein, UPF0093; putative TRANSMEMBRANE PROTEIN proA 2767159 - 2765879 - | gamma-glutamylphosphate reductase TERM 2254 2766582 - 2766600 + g 73 -16 -2.64735 | ATGGTGATCAGGCGA CCGACCGC GGC GCGGTCGG TGGTCTCGATCACCT holA 2768324 - 2767266 - | DNA polymerase III, delta subunit TERM 2255 2767847 - 2767797 - G 72 -14 -3.14132 | gap 2 CTTGTCGGCGATGAA CTGCAGC-GC-GCGCCGGCCAGGC TCACC GCCTTGCACGCGCTGCTGCTGCAG CGCCAGCCGCTCGCC RALTA_A2614 2768854 - 2768339 - | putative lipoprotein; rlpB lipoprotein family. leuS 2771538 - 2768899 - | leucine tRNA synthetase TERM 2256 2771215 - 2771239 + g 72 -8.4 -4.07885 | overlap 2771212 GGTCCAGGCGGCCGG CGCCACGCCG TTGTT CAGCGCGGCG TTTTCCGCCGGCATG TERM 2257 2771683 - 2771657 - R 74 -12.2 -3.44586 | opp_overlap 2771670 2771673, overlap 2771648 AGCAATCGATTATAA CCGTGGCGGC AGTGCTG GCCGCCCCGG GGCCGGCCTTACTTC TERM 2258 2771673 - 2771691 + r 72 -11.6 -3.33696 | opp_overlap 2771657, overlap 2771670 CGTGGCGGCAGTGCT GGCCGCCC CGG GGCCGGCC TTACTTCAGGCCCAG dapB 2772489 - 2771692 - | dihydrodipicolinate reductase TERM 2259 2772559 - 2772532 - R 82 -14.8 -3.27525 | overlap 2772527 2772536 GTGCGCGAAAGGGAA GCGAGCCGGCCA TGCC TGGCCGGCCCGG AAAACCGGCAGCGCG TERM 2260 2772555 - 2772536 - R 74 -15 -2.58812 | overlap 2772532 2772527 GCGAAAGGGAAGCGA GCCGGCCA TGCC TGGCCGGC CCGGAAAACCGGCAG TERM 2261 2772597 - 2772564 - R 82 -10.9 -4.07568 | gap 1, opp_overlap 2772563 GGCCGGCCCGGAAAA CCGGCA-GCGCGCCGG CGG CCGGCGCGCGTGATAG ATCAGTTGGCGGCTG RALTA_A2617 2773237 - 2772599 - | putative outer membrane lipoprotein, SmpA/OmlA family TERM 2262 2773318 - 2773302 - H 100 -13.7 -4.25104 | overlap 2773313 GTGTGGGCATGAAAA CGGCGCA AAA TGCGCCG ATTGCACCACACGAG fur1 2773484 - 2773915 + | transcriptional repressor of iron transport (Fur family) TERM 2263 2773987 - 2773945 - T 88 -16.4 -3.32844 | opp_overlap 2773958, overlap 2773916 2773946 2773958 GGGCGGAGCGCAGAA GGGCAACAAAAAACCGGCGC CAG GCGCCGGTTTTTTGTTGGAG GCCAGCCGCCGCTGC TERM 2264 2773986 - 2773946 - T 90 -19.9 -2.59564 | opp_overlap 2773958, overlap 2773916 2773945 2773958 GGCGGAGCGCAGAAG GGCAACAAAAAACCGGCGC CAG GCGCCGGTTTTTTGTTGGA GGCCAGCCGCCGCTG TERM 2265 2773958 - 2773974 + T 100 -15.1 -5.4505 | opp_overlap 2773946 2773945 2773958 AAGGGCAACAAAAAA CCGGCGC CAG GCGCCGG TTTTTTGTTGGAGGC TERM 2266 2773974 - 2773958 - T 100 -15.1 -5.4756 | opp_overlap 2773958, overlap 2773946 2773945 AAGGGCAACAAAAAA CCGGCGC CAG GCGCCGG TTTTTTGTTGGAGGC phcA 2775000 - 2774005 - | transcriptional regulator, LysR family TERM 2267 2775003 - 2775019 + r 72 -4.3 -4.58395 | overlap 2775000 CTACGTTCACCATGA TCAGGCC CCC GGTCAGA TTTTTCACAGCTAAG TERM 2268 2775354 - 2775327 - R 82 -14.2 -3.33744 | opp_overlap 2775333 2775351, overlap 2775333 TCCTGCCCGAAAAAT GAAAAACGCGCC CGAA GGCGCGTTTCCC CGGCTGCAAGCGGCG TERM 2269 2775348 - 2775333 - R 100 -11.8 -5.18355 | opp_overlap 2775333, overlap 2775327 CCGAAAAATGAAAAA CGCGCC CGAA GGCGCG TTTCCCCGGCTGCAA TERM 2270 2775333 - 2775348 + r 75 -11.8 -3.54424 | opp_overlap 2775333 2775327 CCGAAAAATGAAAAA CGCGCC CGAA GGCGCG TTTCCCCGGCTGCAA gapA 2776370 - 2775372 - | Glyceraldehyde-3-phosphate dehydrogenase A TERM 2271 2776437 - 2776399 - R 100 -17.5 -3.67296 | gap 2, opp_overlap 2776401 2776402 GAGGATCGATTGAAA CCG-GCGG-GCGCCGCG TCTGCCG CGCGGCGCACCGCGCGG CACAGGCGCCCGGAT tktA 2778488 - 2776455 - | transketolase 1 TERM 2272 2777107 - 2777131 + g 70 -15.7 -2.78384 | opp_overlap 2777087 CGGATCTTCATCAGC GCCGCCATGCG CAG CGCATTGCGGC TGTAGTCCGAGAAGG TERM 2273 2778738 - 2778764 + H 71 -10.7 -3.53012 | opp_overlap 2778728, overlap 2778740 TAAGATGCACTCTCG CACCGCGCGGC ACATG GCCGCGCCGGG TTTCCCGCAACCAGG RALTA_A2622 2778788 - 2779222 + | conserved hypothetical protein; Glyoxalase/bleomycin resistance protein/dioxygenase family TERM 2274 2779908 - 2779870 - g 72 -8.6 -4.09963 | opp_overlap 2779871 2779872 CCCGAAGAAGAACAA GCCGCGCTGCAGGCGGGT TTC ACCGGCGTGTCGCTCGGC CCGCGCATCCTGCGT RALTA_A2623 2779222 - 2779983 + | conserved hypothetical protein, DUF558 RALTA_A2624 2780040 - 2780654 + | conserved hypothetical protein, DUF937 TERM 2275 2780705 - 2780676 - T 95 -20.9 -3.28924 | opp_overlap 2780683, overlap 2780683 CACCGGCCCTGACAA GCAAAAAGCCCGC ATCA GCGGGCTTTTTGC CAGATATGCCGCCGA TERM 2276 2780698 - 2780683 - T 100 -11.8 -4.93365 | opp_overlap 2780683, overlap 2780676 CCTGACAAGCAAAAA GCCCGC ATCA GCGGGC TTTTTGCCAGATATG TERM 2277 2780683 - 2780698 + T 100 -11.8 -4.59109 | opp_overlap 2780683 2780676 CCTGACAAGCAAAAA GCCCGC ATCA GCGGGC TTTTTGCCAGATATG RALTA_A2625 2781351 - 2780737 - | Putative ribonuclease inhibitor RALTA_A2626 2781722 - 2781351 - | putative Guanyl-specific ribonuclease PRECURSOR SIGNAL PEPTIDE PROTEIN; ribonuclease N1/T1 family TERM 2278 2782060 - 2782045 - R 100 -11.8 -5.60993 | opp_overlap 2782045 GCGGCGACAAAAAAA GCCGGG CGAA CCCGGC TTTCCGTCATATTGG TERM 2279 2782045 - 2782060 + r 78 -11.8 -3.71607 | opp_overlap 2782045 GCGGCGACAAAAAAA GCCGGG CGAA CCCGGC TTTCCGTCATATTGG maeB2 2784422 - 2782101 - | NAD(P)-dependent malic enzyme TERM 2280 2782947 - 2782974 + g 72 -6.2 -4.2558 | gap 1 CTGCAGCACGGCGGG GC-GGCCGATCAG GAT CGGGTTGGCCAGC TTTTCGTCGACGATC TERM 2281 2783010 - 2783043 + g 77 -11.7 -3.83568 | gap 1, overlap 2782999 2782999 CACGGCGCGCAGCAC GCGC-TCTTCCTCGCC CTC GGCGAAGACGATGCGC TTCTTGTCCATCTCG TERM 2282 2784360 - 2784381 + g 70 -12.3 -3.39286 | gap 1, overlap 2784358 2784362 CTCGAGCGCCGCTTT GC-GCAGCGC CTC GCGCTGCTGC TGTTTCAGATCGTCT TERM 2283 2784965 - 2784983 + G 91 -8.8 -5.02476 | CGATCAGCACCGACA TGCTGGTC AGC GGCCGGCA TTTTTTCCCGGATGT thiL 2784814 - 2785794 + | thiamin-monophosphate kinase pgpA 2785917 - 2786486 + | Phosphatidylglycerophosphatase A RALTA_A2630 2786533 - 2787030 + | conserved hypothetical protein; cinA family TERM 2284 2787088 - 2787059 - T 78 -15.1 -2.73159 | opp_overlap 2787065, overlap 2787065 GCAAGCCGCTCAAAC GAAAAACCGCGCC AGCA GGCGCGGTTTTTT TTCGTGCCGCGTGCG TERM 2285 2787082 - 2787065 - T 100 -14.1 -4.98531 | opp_overlap 2787065, overlap 2787059 CGCTCAAACGAAAAA CCGCGCC AGCA GGCGCGG TTTTTTTTCGTGCCG TERM 2286 2787065 - 2787082 + T 100 -14.1 -5.86061 | opp_overlap 2787065 2787059 CGCTCAAACGAAAAA CCGCGCC AGCA GGCGCGG TTTTTTTTCGTGCCG pyrF 2787926 - 2787108 - | Orotidine 5'-phosphate decarboxylase (OMP decarboxylase) (OMPDCase) TERM 2287 2788121 - 2788104 - H 79 -9.1 -4.17048 | TTCGTCGCAAAACAA TGCGCGG CATC CCGCACA GCCGCGCCCCGTCAT RALTA_A2632 2788135 - 2789034 + | conserved hypothetical protein, DUF6; putative membrane protein TERM 2288 2789077 - 2789037 - T 71 -11 -3.53012 | opp_overlap 2789044, overlap 2789038 CGTGCCGGGCTGAAA CGCGCGGCCATGCCGG GGTCGCGGG CCGGCAACGGCGCGCG CCCGTCGCGGAGATT RALTA_A2633 2789346 - 2789152 - | hypothetical protein TERM 2289 2789275 - 2789309 + g 83 -15.1 -3.64703 | gap 1, overlap 2789278 GCTCCGCGCTTCGTC GGC-CTTGCCCGCAGT CAGA ACTGCGGGCGAGTGTC TTTCCATGCCACCGG TERM 2290 2789278 - 2789305 + g 87 -17.8 -3.27408 | overlap 2789275 CCGCGCTTCGTCGGC CTTGCCCGCAGT CAGA ACTGCGGGCGAG TGTCTTTCCATGCCA corA 2789590 - 2790552 + | Mg2+/Ni2+/Co2+ transport protein (Mg transport system I) mtgA 2791336 - 2790563 - | Monofunctional biosynthetic peptidoglycan transglycosylase (Monofunctional TGase) aroE 2792241 - 2791354 - | Shikimate dehydrogenase RALTA_A2637 2793173 - 2792241 - | putative tonB-related transmembrane protein TERM 2291 2792376 - 2792340 - G 73 -12.2 -3.53224 | gap 1 CATCTCGGCGGTAAA GGCGCCGAACG-GCGCG GCCG CGCGCACGATCGCCACC GCCTGGCGGTCCAGC RALTA_A2638 2795400 - 2793298 - | putative Exoribonuclease II RALTA_A2639 2796368 - 2795628 - | putative 3-oxoacyl-[acyl-carrier-protein] reductase; putative short-chain dehydrogenases/reductases (SDR) family protein RALTA_A2640 2797030 - 2796365 - | putative chorismate pyruvate lyase RALTA_A2641 2797641 - 2797027 - | putative esterase mpl 2799044 - 2797656 - | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase TERM 2292 2799864 - 2799822 - g 72 -13.3 -3.14344 | gap 1 GATGCCGTCGATGAA CGCGGCGCAGTGCGCACGGA TGCC TCAGGGCGCGCCGC-CCGCG CCGACGTGCAGGCCG RALTA_A2643 2799180 - 2799923 + | hypothetical protein RALTA_A2644 2799959 - 2800507 + | putative disulfide reductase, TlpA-like family; putative thiol-disulfide oxidoreductase aroQ 2800705 - 2801202 + | 3-DEHYDROQUINATE DEHYDRATASE (3-DEHYDROQUINASE) (TYPE II DHQASE) PROTEIN accB 2801366 - 2801833 + | Biotin carboxyl carrier protein of acetyl-CoA carboxylase TERM 2293 2802499 - 2802457 - g 77 -14.6 -3.21747 | overlap 2802445 GCAGGCCATGATCAA GGCCGGCGTGCCGTGCGTGC CCG GCTCGGACGGCGCGCTGCCC GACGACCCCAAGGAA TERM 2294 2802581 - 2802559 - g 80 -16.2 -3.21099 | opp_overlap 2802562 CCCGGTGATCATCAA GGCCGCCGGC GGC GGCGGCGGCC GCGGCATGCGTGTGG accC 2802083 - 2803435 + | Biotin carboxylase (Acetyl-CoA carboxylase subunit A) prmA 2803475 - 2804368 + | Ribosomal protein L11 methyltransferase TERM 2295 2805763 - 2805794 + G 81 -2.8 -5.03314 | overlap 2805764 GGTACGATTCCGGAC GCAGCAGGCGCCAG CCAA CTATCGCGTGCTGA TTTTTTACCCCTGAA RALTA_A2649 2804378 - 2805808 + | hypothetical protein tpx 2805805 - 2806407 + | thiol peroxidase TERM 2296 2806426 - 2806464 + F 100 -10.9 -4.7629 | gap 1, opp_overlap 2806411, overlap 2806431 GCGGCGCGCCTGCGA TGTCAGCGGCCGCCCGCG ACCA CG-GGGCGGCCGCTTCTG TTTTTGCGTTACTGC TERM 2297 2806431 - 2806459 + F 100 -19.6 -4.10257 | gap 1, opp_overlap 2806411, overlap 2806426 GCGCCTGCGATGTCA GCGGCCGCCCGCG ACCA CG-GGGCGGCCGC TTCTGTTTTTGCGTT RALTA_A2651 2806534 - 2807481 + | putative adenosine kinase TERM 2298 2807468 - 2807503 + F 72 -3.8 -4.57569 | gap 1, opp_overlap 2807439, overlap 2807469 2807470 AGTCTGCATTCGGGT ACCGCTACGC-CTGACC TGC GGCCGGCGCGTGGCGAA TTTTTCGGGAACTGA TERM 2299 2807876 - 2807849 - g 71 -10.6 -3.78934 | gap 1, overlap 2807855 CGCGGCCGAGAACAA GATCAACCAGCGC CGC GCGCTGGA-GATC ACCGTGCGCCTGGAC TERM 2300 2807871 - 2807855 - g 76 -13.7 -3.48696 | overlap 2807849 CGAGAACAAGATCAA CCAGCGC CGC GCGCTGG AGATCACCGTGCGCC RALTA_A2652 2807520 - 2807996 + | putative OUTER MEMBRANE LIPOPROTEIN TRANSMEMBRANE; pcp/slyB lipoprotein family TERM 2301 2808032 - 2808057 + T 100 -18.3 -5.27335 | CAAGGCGCACCCCAG GCGCCGTACCC GCAA GGGTGCGGCGC TTTTTCTTTGGCCGA TERM 2302 2808137 - 2808112 - T 100 -9 -5.14563 | gap 2 GCGCCCATGAAAAAA CCCGCCG--GGC GGTT GCCATCGGCGGG TCGGCAAGACCTCAG RALTA_A2653 2808820 - 2808257 - | putative histone H1/H5 family protein, HCT subfamily. TERM 2303 2808772 - 2808797 + g 93 -6.1 -5.27335 | gap 1, overlap 2808764 2808774 2808775 CCTTCTTGGCGGCCG GCTTGGCGGC CTTCTTA GCCGCC-GGC TTTTTCTTTGCAGCA RALTA_ACDS2808859R 2809247 - 2808858 - | hypothetical protein TERM 2304 2809291 - 2809303 + r 85 -10.5 -4.29176 | opp_overlap 2809291 CGTCATTGCATCGAA GCGCG CAT CGCGC TTTTCGGTTCCATCT RALTA_ACDS2809356R 2809612 - 2809355 - | hypothetical protein TERM 2305 2810277 - 2810245 - H 77 -4.1 -4.82901 | gap 2, overlap 2810253 2810254 GCTGCGCCACAAAAA CCCGCAAACGCCCGC TGCAT GCGG-C-CTGGCGGG CAGCGGACTGGCGCC RALTA_A2654 2810382 - 2810846 + | conserved hypothetical protein; putative exported protein TERM 2306 2810963 - 2810907 - T 100 -19.1 -4.05446 | opp_overlap 2810924, overlap 2810912 2810924 CTGCCTAAGGAGAAA CAGCAGGCGA-AAAAAAACCGGGCGGT GATGA ACCGCCCGGTTTTTTTGTC-CCCGATG CTGCGCTTTACATGC TERM 2307 2810959 - 2810912 - T 93 -20.9 -2.92326 | gap 1, opp_overlap 2810924, overlap 2810907 2810924 TAAGGAGAAACAGCA GGCGA-AAAAAAACCGGGCGGT GATGA ACCGCCCGGTTTTTTTGTCCCC GATGCTGCGCTTTAC TERM 2308 2810946 - 2810924 - T 100 -16.3 -5.78622 | opp_overlap 2810924, overlap 2810912 2810907 GCAGGCGAAAAAAAA CCGGGCGGT GATGA ACCGCCCGG TTTTTTTGTCCCCGA TERM 2309 2810924 - 2810946 + T 100 -16.3 -5.60993 | opp_overlap 2810924 2810912 2810907 GCAGGCGAAAAAAAA CCGGGCGGT GATGA ACCGCCCGG TTTTTTTGTCCCCGA RALTA_A2655 2813079 - 2810971 - | putative tonB-dependent receptor TERM 2310 2813208 - 2813223 + r 74 -4.6 -4.53607 | opp_overlap 2813199, overlap 2813204 TCAACACAATCGTGG CCGATG GCAG CTTCGG TTTTGTGATCCTTTT RALTA_A2656 2814132 - 2813260 - | Putative transcription regulator, LysR family TERM 2311 2813959 - 2814000 + g 78 -14.4 -3.65314 | gap 2 GGCCGGCGTCGGCTG CGCGCCGTGGCGGCCGCGTG TCAG CA-GCGGCA-CCCCGGCGCG TTCTTCCAGCTTGCG RALTA_A2657 2814265 - 2814657 + | Conserved hypothetical protein; Putative 4-oxalocrotonate tautomerase COG1942 TERM 2312 2815293 - 2815305 + G 84 -10.5 -4.41494 | overlap 2815280 GATGCCGGGCGCGAT CGCGC TGG GCGCG TTTTCGTTCACCATG RALTA_A2658 2814859 - 2816250 + | putative permease RALTA_A2659 2816351 - 2817184 + | putative oxidoreductase RALTA_A2660 2817617 - 2817201 - | putative lipoprotein RALTA_A2661 2817818 - 2818396 + | putative lipoprotein TERM 2313 2818407 - 2818449 + F 100 -9.7 -5.03715 | gap 1, overlap 2818408 TGTAGCAGCGGATTG CGGTGGATGCCCGCGCGGCC GTCG GGCCGCGC-GGCGTCGGGCA TTTTTTCGCGATGGT TERM 2314 2818408 - 2818448 + F 77 -13.2 -3.61506 | gap 1, overlap 2818407 GTAGCAGCGGATTGC GGTGGATGCCCGCGCGGCC GTCG GGCCGCGC-GGCGTCGGGC ATTTTTTCGCGATGG TERM 2315 2819033 - 2819060 + G 71 -11.9 -3.59979 | GGCCATGACCGAGTG GCTGGCCGGCG ATGCCG CGCCCGCCGGC TTTACCGTCGACCAG rdgC 2818506 - 2819405 + | Recombination associated protein RALTA_A2663 2819903 - 2819460 - | conserved hypothetical protein; Putative thioesterase/thiol ester dehydrase-isomerase RALTA_A2664 2820182 - 2821174 + | conserved hypothetical protein, UPF0065 RALTA_A2665 2821826 - 2823532 + | hypothetical protein RALTA_A2666 2823643 - 2824152 + | Putative Acyl-CoA N-acyltransferase RALTA_A2667 2825047 - 2824244 - | Putative enoyl-CoA hydratase/isomerase RALTA_A2668 2826285 - 2825044 - | putative caiB/baiF CoA-transferase family. RALTA_A2669 2827313 - 2826348 - | conserved hypothetical protein, UPF0065 RALTA_A2670 2828312 - 2827374 - | putative transcription regulator, LysR family RALTA_A2671 2828287 - 2828502 + | hypothetical protein RALTA_A2672 2829366 - 2828641 - | hypothetical protein RALTA_A2673 2829959 - 2829363 - | hypothetical protein TERM 2316 2829764 - 2829776 + g 100 -3.4 -5.60556 | GACCCATATCAGGCG TGCA TACTT TGCA TTTTTCTTTTGTCTT RALTA_A2674 2830303 - 2829956 - | hypothetical protein RALTA_A2675 2830790 - 2830287 - | hypothetical protein RALTA_A2676 2831190 - 2830798 - | hypothetical protein RALTA_A2677 2831734 - 2831441 - | Conserved hypothetical protein, YCII-related domain TERM 2317 2832749 - 2832774 + G 70 -3.9 -4.42238 | gap 1 GCTCGCACTTCTGCT GGCT-GCGCAGG CCA TCTGCACCGGCC TTTTGCTTACGCTGC TERM 2318 2832926 - 2832946 + G 72 -6.7 -4.371 | opp_overlap 2832929, overlap 2832920 CGATTTGCGCCGCAA CCATCTCGC GCT GCGCGAAGG TTTTGGTCTGCTGAA RALTA_A2678 2831976 - 2833694 + | putative ABC transporter, ATP-binding and permease component RALTA_A2679 2833818 - 2834249 + | hypothetical protein RALTA_A2680 2834385 - 2835911 + | hypothetical protein RALTA_A2681 2838628 - 2836304 - | hypothetical protein TERM 2319 2836373 - 2836418 + g 73 -10.4 -3.8647 | gap 2, opp_overlap 2836390, overlap 2836374 GGCTTTGACTTGTTT CCGGATGGCAGGGGAAAGGCGA GTAA TCGCC-T-CCCCAGCCTTCCGC TTTGCTGTGCTGAAT TERM 2320 2837239 - 2837256 + g 76 -2.6 -4.74518 | opp_overlap 2837233 2837232 2837230, overlap 2837244 CAGCAATATCGGCCT TCGCCG CCGAGA CGGCTA TTTCTTTTCGTCGTT TERM 2321 2837244 - 2837254 + g 72 -8.2 -3.97149 | opp_overlap 2837232 2837230, overlap 2837239 ATATCGGCCTTCGCC GCCG AGA CGGC TATTTCTTTTCGTCG RALTA_A2683 2839439 - 2838681 - | hypothetical protein TERM 2322 2839206 - 2839223 + g 73 -7 -4.13767 | overlap 2839205 CTTCATCCCCTCTTG GTAGGC ATCGCC GCCTAC TTTTCCACTCAGAGC TERM 2323 2839518 - 2839537 + r 71 -13.6 -2.58579 | overlap 2839517 AGATGGCTGCTTTCA GGGCCGAT GTCG ATCGGCCC ATTCTGGCCGATTGC TERM 2324 2839582 - 2839600 + r 78 -10.3 -3.99324 | opp_overlap 2839582 TCTAGCTATGAAAAA TGGGAGC CATCA GCTCCCA TTTCTCATCATCAAA TERM 2325 2839600 - 2839582 - R 100 -11 -4.7497 | opp_overlap 2839582 TCTAGCTATGAAAAA TGGGAGCC ATC AGCTCCCA TTTCTCATCATCAAA nrdB 2840822 - 2839632 - | ribonucleoside diphosphate reductase 1, beta subunit, ferritin-like TERM 2326 2840950 - 2840928 - R 78 -9.9 -4.08919 | gap 1, opp_overlap 2840924 2840929 2840933, overlap 2840930 AAACTGCAAAGGAAA GAGAAGGGCC TTGC GGCCCTTC-C GTTACTTCTGATTAC TERM 2327 2840949 - 2840930 - R 81 -13.6 -3.62756 | opp_overlap 2840929 2840924 2840933, overlap 2840928 ACTGCAAAGGAAAGA GAAGGGCC TTGC GGCCCTTC CGTTACTTCTGATTA TERM 2328 2841224 - 2841249 + r 100 -17.6 -5.50723 | opp_overlap 2841224 CAGCCTTGTTGCAAA GCCCGCGGTG TTCCAC CACCGCGGGC TTTTTCTTTTACTGG TERM 2329 2841249 - 2841224 - R 93 -17.6 -3.53224 | opp_overlap 2841224 CAGCCTTGTTGCAAA GCCCGCGGTG TTCCAC CACCGCGGGC TTTTTCTTTTACTGG nrdA 2844197 - 2841258 - | Ribonucleoside-diphosphate reductase alpha subunit ampD 2845335 - 2844718 - | N-acetyl-anhydromuranmyl-L-alanine amidase pehR 2846972 - 2845332 - | response regulator receiver, FIS type, sigma 54 interacting region TERM 2330 2846369 - 2846412 + g 78 -18.1 -2.72344 | opp_overlap 2846368 2846364 CGGCGACGAACGGAT GCGCGGCGCGCGCGCTG GTGGCGTGGA TGGCGCGCGCGGCGCGC TCCTTGCCGCTGCCG pehS 2849144 - 2846997 - | TRANSMEMBRANE SENSOR HISTIDINE KINASE TRANSCRIPTION REGULATOR TERM 2331 2847786 - 2847816 + g 81 -9.7 -4.30576 | GATCTGGTGCGCGAT GCTGGCCACCA GCCGGCCCA TGGCGGCCAGC TTTTCCTGCTGCACC TERM 2332 2848822 - 2848795 - G 75 -8.4 -4.13945 | gap 1 ACGCGCAGGTGAAAA TGCCGGC-GCCAC AGC GTGCCCGCCAGCA TCGCCAGCGCAATGC RALTA_A2690 2849458 - 2849141 - | conserved hypothetical protein; putative exported protein RALTA_A2691 2850412 - 2849465 - | putative Cytochrome c assembly protein; putative TRANSMEMBRANE PROTEIN TERM 2333 2849524 - 2849499 - G 70 -8.9 -3.84514 | ACTTCAATCACGAAA CGGCTGCCGAC ATAG GCCAGCAGCAG GATGCCGAACGAGGC ffh 2850556 - 2851950 + | Signal Recognition Particle (SRP) component with 4.5S RNA (ffs) RALTA_A2693 2852004 - 2852546 + | putative HYPOXANTHINE PHOSPHORIBOSYLTRANSFERASE; putative TRANSMEMBRANE PROTEIN TERM 2334 2852548 - 2852566 + T 74 -5.9 -4.4715 | opp_overlap 2852560 GGGCGCTGGTTTGAG CCGTCTG CAAGA CTGACGG TTTTCTCCCTTCCCC TERM 2335 2852610 - 2852560 - T 90 -17.9 -3.01924 | gap 2, opp_overlap 2852548, overlap 2852603 2852605 GAGCCGTCTGCAAGA CTGAC-GGTTTTCTCCCTTC-CCCG CCG CGGGAGAAGGGAGAAAACAGGTCAA GCCTGGTGCGTCCCC TERM 2336 2852615 - 2852603 - T 71 -4.8 -4.49337 | overlap 2852560 2852605 GGAGAAGGGAGAAAA CAGG TCAAG CCTG GTGCGTCCCCAGAAT RALTA_A2694 2853230 - 2852607 - | neutral amino-acid efflux system TERM 2337 2853209 - 2853177 - G 71 -11.1 -3.63068 | overlap 2853170 2853195 2853197 CGACACCAGGGCAAA GCCGGCAAAGGCGGC AAA GACACCGGTGCCGGC GGCGAGTTGGGACAC RALTA_A2695 2853997 - 2853335 - | neutral amino-acid efflux system TERM 2338 2853845 - 2853811 - G 89 -7.9 -4.84359 | CGAGGCCGATAAAAA CGCCAT-TGCCCAGCGC GAT GC-CCAGGCAGACGGCG CTGGCGCGCCGCGGC RALTA_A2696 2854920 - 2854087 - | Putative transcriptional regulator, AraC family RALTA_A2697 2855807 - 2854917 - | putative Prolyl 4-hydroxylase alpha subunit RALTA_A2698 2856562 - 2855804 - | Putative lytic murein transglycosylase; putative exported protein; putative precursor TERM 2339 2856429 - 2856376 - G 78 -16.6 -3.05844 | CGCCGGAGGCGAACA CCGGCCGCAGCG-GCCGGTCGTCGGC AATG GCCG-CGGCCAGCGCGCCGCGCACGG AGTCGGCCAGGTCTT TERM 2340 2856532 - 2856502 - G 73 -16.1 -2.65264 | gap 1, overlap 2856484 CCAGCAGCGAGACCA GCAGCGCGCCCGCC AGGC GGCGGGC-CGCGGC GGCGGCAGTCGGGCC proS 2858289 - 2856568 - | prolyl-tRNA synthetase TERM 2341 2857257 - 2857214 - G 72 -5.1 -4.52589 | opp_overlap 2857214 2857237, overlap 2857215 GCGCCGCAGACAAAA TCGCTCATGTTGGCGACCG TGCGGT CGGCCACCACCTTGACCGG CTTCTTCATGTCGAT nudH 2858482 - 2859165 + | dinucleotide oligophosphate (alarmone) hydrolase RALTA_A2701 2859158 - 2859739 + | putative LIPOPROTEIN TERM 2342 2859791 - 2859765 - T 100 -21.6 -5.64274 | opp_overlap 2859765 GCAGGCATAAAAAAA CGGCGGGACCGC CAG GCAGTCCCGCCG TTTTTCTTTCCATCG TERM 2343 2859765 - 2859791 + T 100 -19.4 -5.30616 | opp_overlap 2859765 GCAGGCATAAAAAAA CGGCGGGACCGC CAG GCAGTCCCGCCG TTTTTCTTTCCATCG proB 2860926 - 2859808 - | gamma-glutamate kinase obgE 2862071 - 2860974 - | GTPase involved in cell partioning and DNA repair TERM 2344 2862015 - 2862041 + g 72 -14.4 -3.18199 | overlap 2862003 CCGGAACGAGGCGCT GCCATTGCCGCC GTT GCCGGCGATGGC TTCAATTCGGGCTTC TERM 2345 2862138 - 2862160 + r 100 -19.2 -3.78775 | opp_overlap 2862138, overlap 2862145 2862158 CGCCAGAAAAGAAAA GGCCCCGCAA GCG TTGCGGGGCC TTTCGTCCTGCAAAG TERM 2346 2862160 - 2862138 - R 100 -19.2 -5.18371 | opp_overlap 2862138 2862145 2862158 CGCCAGAAAAGAAAA GGCCCCGCAA GCG TTGCGGGGCC TTTCGTCCTGCAAAG rpmA 2862443 - 2862183 - | 50S ribosomal subunit protein L27 TERM 2347 2862401 - 2862428 + g 90 -5.4 -5.37043 | opp_overlap 2862403, overlap 2862402 2862403 GCTTCGATTCGGAAT CACGGCCGTTCC GCGT GGAACCGCCGCC TTTTTTCTGTGCCAT rplU 2862794 - 2862483 - | 50S ribosomal subunit protein L21 TERM 2348 2862745 - 2862775 + g 71 -2.4 -4.56775 | overlap 2862770 ACTTTCAGTTTTTCG CCAGCAGCAACC TTGTATT GCTTGCCGCCGG TTTTTACGACCGCGT TERM 2349 2862834 - 2862822 - H 74 -4.7 -4.65916 | opp_overlap 2862830, overlap 2862830 CGGATGTGAATAAAA CGCCG AAA CCGCG CAATGCGGCCCGGTT TERM 2350 2862952 - 2862938 - H 83 -7.1 -4.91429 | overlap 2862948 AAACTGCAAAGAAAA CAGGC ACATA GCCTG TGAGCGGCGCAGCCC TERM 2351 2863066 - 2863031 - H 77 -12.5 -3.54424 | opp_overlap 2863063 2863064 CGCCAGTGCGGCAAA CGCCACCCACCACGC GGTGCG GCGCAGTTGGCGGCG AGGTATGGGCTTGTC ispB 2863162 - 2864199 + | octaprenyl diphosphate synthase TERM 2352 2864398 - 2864435 + T 85 -15.1 -3.5362 | opp_overlap 2864404, overlap 2864404 CACCCCGACCAGATT TAGAAAGCCGAATCAAC GAAA GTTGGTTCGGCTTTTTG TCTTTCTACCCCTTC TERM 2353 2864404 - 2864429 + T 100 -14.1 -5.24799 | opp_overlap 2864404, overlap 2864398 GACCAGATTTAGAAA GCCGAATCAAC GAAA GTTGGTTCGGC TTTTTGTCTTTCTAC TERM 2354 2864429 - 2864404 - T 81 -11.9 -3.95787 | opp_overlap 2864404 2864398 GACCAGATTTAGAAA GCCGAATCAAC GAAA GTTGGTTCGGC TTTTTGTCTTTCTAC RALTA_A2708 2864766 - 2864455 - | hypothetical protein RALTA_A2709 2865094 - 2864756 - | hypothetical protein pilB 2865416 - 2867140 + | TYPE IV PILUS ASSEMBLY PROTEIN TERM 2355 2867434 - 2867421 - g 78 -5.9 -4.59773 | CGTCAGGCTGAAAAA GCGCA AGGC CGCGC GCGGGCGCAAGATCA pilC 2867206 - 2868477 + | type IV pilus ASSEMBLY TRANSMEMBRANE PROTEIN TERM 2356 2868564 - 2868585 + G 83 -12.3 -3.96148 | gap 1, opp_overlap 2868520, overlap 2868565 CCCGCTGCTGCACGC G-CTGGCGGC GCT GCCGCCAGTC TTTCTGGTGGCGGCA TERM 2357 2868565 - 2868583 + G 85 -16 -3.57406 | opp_overlap 2868520, overlap 2868564 CCGCTGCTGCACGCG CTGGCGGC GCT GCCGCCAG TCTTTCTGGTGGCGG pilD 2868481 - 2869404 + | TYPE 4 PREPILIN PEPTIDASE BIFUNCTIONNAL: LEADER PEPTIDASE AND N-METHYLTRANSFERASE TRANSMEMBRANE PROTEIN coaE 2869447 - 2870103 + | Dephospho-CoA kinase TERM 2358 2870542 - 2870502 - g 73 -12.6 -3.40371 | gap 2, overlap 2870503 GACCTGATCAAGGAA CTGGAGCGC--CAGCGCCAG GCC CTGGCGCCGTTGCGCGCCAA TCCGCAGATTGACCA RALTA_A2714 2870313 - 2871071 + | conserved hypothetical protein, DUF1342 RALTA_A2715 2871089 - 2871277 + | conserved hypothetical protein, DUF329 RALTA_A2716 2873341 - 2871302 - | putative oligopeptide transporter mutT 2873878 - 2873432 - | MUTATOR MUTT PROTEIN (7, 8-DIHYDRO-8-OXOGUANINE-TRIPHOSPHATASE) TERM 2359 2873812 - 2873780 - G 80 -16.9 -3.21099 | CTGCGCCAGCAGGAA GCGGCCGTCGGGCTG CAC CAGCACGCCGACCGC CACCTCGGTCACCTT RALTA_A2718 2874780 - 2873875 - | conserved hypothetical protein, DUF815 TERM 2360 2874841 - 2874814 - R 77 -15.6 -2.65354 | overlap 2874810 2874811 GGCAGCGGAAATCGA TGTCCTTCCCGC GTGC GCGGGAAGGACG GACAGGCTCAGGAAC RALTA_A2719 2876087 - 2874849 - | putative ARGININE BIOSYNTHESIS BIFUNCTIONAL PROTEIN: GLUTAMATE N-ACETYLTRANSFERASE (OR OATASE) AND AMINO-ACID ACETYLTRANSFERASE TERM 2361 2876134 - 2876166 + r 93 -17.8 -3.36273 | opp_overlap 2876139, overlap 2876135 ACTTGCTTGTCTCAG ACGAACATGCCCGC GAAGG GCGGGCATGTTCGA TTCCTCTTGCGCCAC TERM 2362 2876135 - 2876165 + r 100 -21.3 -2.6155 | opp_overlap 2876139, overlap 2876134 CTTGCTTGTCTCAGA CGAACATGCCCGC GAAGG GCGGGCATGTTCG ATTCCTCTTGCGCCA TERM 2363 2876161 - 2876139 - R 82 -14.9 -3.25823 | opp_overlap 2876135 2876134 CTTGTCTCAGACGAA CATGCCCGC GAAGG GCGGGCATG TTCGATTCCTCTTGC secA 2879009 - 2876232 - | preprotein translocase, ATPase secretion component (General Secretory Pathway) TERM 2364 2877884 - 2877894 + g 72 -6.8 -4.30576 | overlap 2877876 2877878 GGAAGGTGACGGTCG CCAG CGT CTGG TTTTCCTGCTGGACA TERM 2365 2878238 - 2878248 + g 71 -2.4 -4.63932 | overlap 2878234 GCTTCTCCACCCCGG TGCC GTC GGCC TTTTCTTCGCCGATC RALTA_A2721 2879268 - 2879771 + | hypothetical protein TERM 2366 2879827 - 2879792 - T 93 -17 -3.53012 | opp_overlap 2879798, overlap 2879798 CGCGCCGCGTCCAAA GCAAAAGAGCCGACCT GTGC AGGTCGGCTCTTTCTC TATGCGAGGCCGCTC TERM 2367 2879798 - 2879821 + T 100 -16.8 -4.12532 | opp_overlap 2879792 2879798 GCGTCCAAAGCAAAA GAGCCGACCT GTGC AGGTCGGCTC TTTCTCTATGCGAGG TERM 2368 2879821 - 2879798 - T 100 -16.8 -4.54727 | opp_overlap 2879798, overlap 2879792 GCGTCCAAAGCAAAA GAGCCGACCT GTGC AGGTCGGCTC TTTCTCTATGCGAGG lpxC 2880758 - 2879841 - | UDP-3-O-acyl N-acetylglucosamine deacetylase TERM 2369 2880826 - 2880843 + r 77 -4 -4.87803 | overlap 2880825 2880828 2880838 TTTTACCACCACATC CGCGGC GCTGCA GCCGGG TTTTGTTTCCGGCTG RALTA_A2723 2881418 - 2880912 - | putative peroxiredoxin TERM 2370 2881656 - 2881614 - R 100 -32.1 -3.92602 | opp_overlap 2881616 2881617, overlap 2881616 CGAAGACGCTACAAA GACGTCCGCGCGGCGCACC TTTTG GGTGCGCCGCGCGGACGGC GATACATCCCGACCG TERM 2371 2881654 - 2881616 - R 100 -33.3 -3.54848 | opp_overlap 2881616 2881617, overlap 2881614 AAGACGCTACAAAGA CGTCCGCGCGGCGCACC TTTTG GGTGCGCCGCGCGGACG GCGATACATCCCGAC TERM 2372 2881765 - 2881782 + r 77 -14.1 -3.2614 | opp_overlap 2881746 GGCGCAGGCGCGGCG CCGCCGG CAGC CCGGCGG TTCATGTCAGCCATG ftsZ 2883089 - 2881896 - | cell division protein; tubulin-like GTP-binding protein and GTPase, forms circumferential ring in cell division TERM 2373 2883155 - 2883108 - R 82 -6.1 -4.82901 | opp_overlap 2883115, overlap 2883123 TGCCTCCGAGAAAAA TCAGTCCCCAGACGATGCGGC CTCCCC GCCGCAACCCCTGGTTTCTGA ACAAGAAACCAAAAA ftsA 2884501 - 2883269 - | cell division protein with ATPase domain, involved in recruitment of FtsK to Z ring ftsQ 2885436 - 2884498 - | septal cell division protein ddlB 2886444 - 2885461 - | D-alanine-D-alanine ligase B, affects cell division murC 2887865 - 2886441 - | UDP-N-acetyl-muramate:alanine ligase, L-alanine adding enzyme TERM 2374 2887732 - 2887746 + g 74 -12.8 -3.62046 | CCCAGCGACGCCAGG CGCCGC GTG GCGGCG TTGTTGCCCACGTCC murG 2888930 - 2887887 - | UDP-N-acetylglucosamine:N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase TERM 2375 2888021 - 2888034 + g 72 -5.9 -4.25104 | overlap 2887989 TCTGCGCCAGGCCCT CGGCC GTCA GGTCG TTTTGCTGCACCAGC ftsW 2890195 - 2888954 - | essential cell division gene, stablilzes FtsZ ring, required for PBP2 expression murD 2891751 - 2890192 - | UDP-N-acetylmuramoylalanine-D-glutamate ligase TERM 2376 2891760 - 2891740 - G 79 -11.8 -4.05446 | opp_overlap 2891739 2891740 2891753 TCCTGTAACGATAAA GCCGCGCC TCATC GGCGCAGC GTCTTTCTTAACGCA mraY 2892937 - 2891768 - | phospho-N-acetylmuramoyl-pentapeptide transferase murF 2894327 - 2892951 - | D-alanine:D-alanine-adding enzyme TERM 2377 2893635 - 2893607 - G 75 -16 -2.90075 | gap 1, opp_overlap 2893611, overlap 2893610 TGGTGCCGAACGACA GCACGCGGC-GCG TGCC CGCCGCCGCGCGC CACACCGGCGCGTAG TERM 2378 2893611 - 2893660 + g 83 -15 -3.57144 | gap 3, opp_overlap 2893607 2893610 GCCGAACGACAGCAC GCGGCGCGTGCCCGC-CGCCGCGCG CCA CAC-CGGCGCGTAGGCAC-CGCCGC TTTCCGCATCGAGCG murE 2895916 - 2894348 - | UDP-N-acetylmuramoylalanyl-D-glutamate 2, 6-diaminopimelate ligase ftsI 2897726 - 2895927 - | division-specific transpeptidase, penicillin-binding protein 3 ftsL 2898043 - 2897732 - | CELL DIVISION FTSL-like TRANSMEMBRANE PROTEIN mraW 2899029 - 2898040 - | S-adenosyl-dependent methyl transferase RALTA_A2738 2899465 - 2899037 - | conserved hypothetical protein, UPF0040 COG2001 RALTA_A2739 2900527 - 2899904 - | Putative ubiquinone biosynthesis and related protein RALTA_A2740 2900865 - 2901998 + | putative OUTER MEMBRANE PORIN SIGNAL PEPTIDE PROTEIN TERM 2379 2902025 - 2902040 + F 100 -10.4 -5.14563 | GGTTCGATCTTGCAA GGCACC TTCG GGTGCC TTTTTTCATGGCGGC RALTA_A2741 2902166 - 2903167 + | conserved hypothetical protein, UPF0065 RALTA_A2742 2903289 - 2903792 + | Putative transcriptional regulator, MarR family RALTA_A2743 2903789 - 2904235 + | conserved hypothetical protein; putative lipoprotein TERM 2380 2904259 - 2904286 + T 88 -14.2 -3.72576 | opp_overlap 2904261 2904264, overlap 2904261 2904264 GGCCGCGCCTGAATG CACAACGGCCTC CGCG GAGGCCGTTGTC TTTGCTGCGGCAGGG TERM 2381 2904261 - 2904284 + T 89 -16.8 -3.44848 | opp_overlap 2904261 2904264, overlap 2904259 2904264 CCGCGCCTGAATGCA CAACGGCCTC CGCG GAGGCCGTTG TCTTTGCTGCGGCAG TERM 2382 2904284 - 2904261 - T 79 -16.8 -2.52464 | opp_overlap 2904261 2904259 2904264, overlap 2904264 CCGCGCCTGAATGCA CAACGGCCTC CGCG GAGGCCGTTG TCTTTGCTGCGGCAG TERM 2383 2904281 - 2904264 - T 76 -12.7 -3.41878 | opp_overlap 2904264 2904261 2904259, overlap 2904261 CGCCTGAATGCACAA CGGCCTC CGCG GAGGCCG TTGTCTTTGCTGCGG TERM 2384 2904264 - 2904281 + T 83 -12.7 -3.86252 | opp_overlap 2904261 2904264, overlap 2904261 2904259 CGCCTGAATGCACAA CGGCCTC CGCG GAGGCCG TTGTCTTTGCTGCGG fadD 2905992 - 2904310 - | acyl-CoA synthetase (long-chain-fatty-acid--CoA ligase) RALTA_A2745 2906843 - 2906181 - | putative transcriptional regulator, TetR/AcrR family RALTA_A2746 2908045 - 2906912 - | putative zinc_binding aminopeptidase; putative transmembrane protein RALTA_A2747 2910150 - 2908042 - | Putative Molybdopterin oxidoreductase TERM 2385 2908538 - 2908525 - G 72 -3.7 -4.63218 | CGGCTCGGAATAAAA CTGGC ACTT GCCCG ATGCCGTGGGGAAGC TERM 2386 2910892 - 2910924 + G 77 -15.5 -3.12327 | overlap 2910891 GGCCGTACACCGGCG CGCAGTCGCTGCGCG ACC CGCGCAGCCGCTACG TCTTCCATGTGCGCG RALTA_A2748 2910441 - 2911643 + | putative ABC-type branched-chain amino acid transporter, periplasmic binding component oppF 2912882 - 2911821 - | oligopeptide transport protein (ABC superfamily, atp_bind) oppD 2913889 - 2912879 - | oligopeptide transport protein (ABC superfamily, atp_bind) dppC2 2914835 - 2913903 - | Dipeptide transport system permease protein (ABC superfamily, membrane) dppB2 2915816 - 2914839 - | dipeptide transport protein 1 (ABC superfamily, membrane component) dppA2 2917541 - 2915955 - | PERIPLASMIC DIPEPTIDE TRANSPORT PROTEIN TERM 2387 2917600 - 2917623 + r 72 -2.4 -4.7373 | overlap 2917599 2917594 2917617 CGGCAATGCGCGCAC GCAGCG GGTCACGAGCGG CGCTGC TTTTTGGTGCGATGG RALTA_A2754 2917829 - 2917608 - | hypothetical protein TERM 2388 2917757 - 2917784 + g 73 -7.6 -4.17089 | gap 1, opp_overlap 2917729 2917725 2917778, overlap 2917750 ATTGCACTGCGCCAA CGCGGCGA-GCGC GCA GCAAATCGCCGCG TTTTGGCGCTTTCGC TERM 2389 2918394 - 2918353 - g 70 -12.9 -3.28791 | gap 1 ATTCGGCGTGCACAA CTGGCCGGGCATGCCGATGG GCG CCTTCGGCACGCGCG-CCGG CCCGCTGATGGCATC RALTA_A2755 2917865 - 2919058 + | putative HIPPURATE HYDROLASE TERM 2390 2919839 - 2919864 + G 73 -7.6 -4.12188 | gap 1, opp_overlap 2919829, overlap 2919840 CCGAAGCCGTGCTGA TGCAC-GCCGT GATGG ACGGCTGTGCG TTTTCGGAGTGGTGG RALTA_A2756 2919145 - 2920170 + | hypothetical protein RALTA_A2757 2921138 - 2920191 - | conserved hypothetical protein; putative exported protein; putative lipoprotein TERM 2391 2920379 - 2920401 + g 72 -3.3 -4.56597 | overlap 2920380 2920381 TATCCACCACGATCA TGCGCACGC GATCG GTGTGCGGG TTTTTCACCAGCGCG TERM 2392 2921336 - 2921325 - R 72 -7.2 -4.18506 | overlap 2921326 GCAGCGGGAAAACAA CGGC GAGC GCCG CGCCAAAGACAAAAC TERM 2393 2921383 - 2921344 - R 89 -16.7 -3.53224 | opp_overlap 2921351, overlap 2921346 2921351 GAGCGCCGCGCCAAA GACAAAACCCCTCG-CAGC ACAC GCTGTCGAGGGGTTTTG-C ACAATAAGAGCCTGG TERM 2394 2921382 - 2921346 - R 95 -20.4 -3.34398 | gap 1, opp_overlap 2921351, overlap 2921344 2921351 GCGCCGCGCCAAAGA CAAAACCCCTCG-CAGC ACAC GCTGTCGAGGGGTTTTG CACAATAAGAGCCTG TERM 2395 2921377 - 2921351 - R 100 -14.5 -4.78848 | gap 1, opp_overlap 2921351, overlap 2921346 2921344 GCGCCAAAGACAAAA CCCCTCG-CAGC ACAC GCTGTCGAGGGG TTTTGCACAATAAGA TERM 2396 2921351 - 2921377 + r 93 -14.5 -4.09685 | gap 1, opp_overlap 2921351 2921346 2921344 GCGCCAAAGACAAAA CCCCTCG-CAGC ACAC GCTGTCGAGGGG TTTTGCACAATAAGA TERM 2397 2924008 - 2924019 + r 72 -7.2 -4.2354 | AGGATCTATTTCACT CCCC TCCC GGGG TTCTTTTCGCCTTTC TERM 2398 2924751 - 2924727 - R 73 -11.5 -3.66178 | opp_overlap 2924727, overlap 2924732 CTTGGCAATGCCAAA GGAAAGCACTC GGT AAGCGCTTTCC TTTGACAACCAATCC TERM 2399 2926914 - 2926940 + r 70 -10 -3.65812 | overlap 2926915 CGACCCCGCAACCCT TGCCGCGCCTGC CTT GCAGGGGCCGCG TTGTGTTGCGAGGGG TERM 2400 2926942 - 2926992 + r 76 -9.9 -3.86015 | gap 1, opp_overlap 2926966, overlap 2926943 TTGCAGGGGCCGCGT TGTGTTGCGAGGG-GGCGAA TAGTAGGCCGGT TTCGCCGCCCTTGCAACACC TTTGTCACGACGCTG TERM 2401 2926943 - 2926991 + r 74 -13.4 -2.91395 | gap 1, opp_overlap 2926966, overlap 2926942 TGCAGGGGCCGCGTT GTGTTGCGAGGG-GGCGAA TAGTAGGCCGGT TTCGCCGCCCTTGCAACAC CTTTGTCACGACGCT badK 2927905 - 2927129 - | cyclohex-1-ene-1-carboxyl-CoA hydratase RALTA_A2760 2928745 - 2927993 - | putative Binding-protein-dependent transporter, ATP_binding component RALTA_A2761 2929436 - 2928783 - | putative Binding-protein-dependent transporter, inner membrane component RALTA_A2762 2930334 - 2929543 - | Putative extracellular solute-binding protein, ABC transporter, periplasmic component TERM 2402 2930231 - 2930265 + g 78 -9.8 -4.20367 | overlap 2930232 2930234 ACGACGATCCGGGTG GCCGTATCCGTGCCGG CAG CTGGCGCGGGCGCGGA TTCTTTCTTGCCGCA TERM 2403 2930232 - 2930264 + g 72 -13.3 -3.11738 | overlap 2930231 2930234 CGACGATCCGGGTGG CCGTATCCGTGCCGG CAG CTGGCGCGGGCGCGG ATTCTTTCTTGCCGC TERM 2404 2930234 - 2930268 + g 75 -9.2 -4.15044 | overlap 2930232 2930231 ACGATCCGGGTGGCC GTATCCGTGCCGGC AGCTGGC GCGGGCGCGGATTC TTTCTTGCCGCAGGC TERM 2405 2930360 - 2930391 + H 76 -11.4 -3.73725 | overlap 2930359 ATGCGGAGGGGAGAG CGCGCCGGGCTTCG CTCG CGCAGGCCGGCGGG TTTCAGATTGTTGTT TERM 2406 2930510 - 2930525 + H 95 -10.4 -4.64861 | TGATGCTAACATTTG CCGACC GACT GGTCGG TTTATTTTAGAGGCG TERM 2407 2930763 - 2930813 + G 83 -13.1 -4.07568 | gap 2 CAAGCCCTGGATCAC GTCGAGGCCGGCGGCG-CCCGC-GC CCT GCTGCTGACCGGCGCCGGCCGCGGC TTTTGCGCGGGCCAG TERM 2408 2931005 - 2931026 + G 81 -13 -3.8709 | overlap 2930990 GGCCTGCGACATGGT GCTGGCGG CGCGCT CCGCCAGC TTTATCCAGGCCTTT paaG1 2930598 - 2931422 + | acyl-CoA hydratase, phenylacetic acid degradation TERM 2409 2931442 - 2931424 - f 70 -13.1 -2.90723 | TCACCGGCAAGTAGA GCGCGGG CTTGC CCCGCGC ATCCCCACACACAGG paaI1 2931466 - 2931918 + | phenylacetic acid degradation protein paaK1 2931970 - 2933274 + | phenylacetyl-CoA ligase, phenylacetic acid degradation TERM 2410 2933282 - 2933323 + T 91 -18.1 -3.19425 | opp_overlap 2933317, overlap 2933265 2933247 2933318 GGCGCTGAATCCGCC GGTTTGCTTCCCTCGCCCG ATTG TGGAAGAGGGAAGCAAACC TTCGTAGGCTTGGTT mltA 2934493 - 2933348 - | MEMBRANE-BOUND LYTIC MUREIN TRANSGLYCOSYLASE A TERM 2411 2934785 - 2934728 - g 83 -8.3 -4.59773 | gap 2, overlap 2934729 2934731 GGGCACGGCGAAAAA GCACCCGCGTCCCACCCGCGCGCCG TCGGAGCACC CGTCGCGCCGGCCGG-CGCAGG-GC GACACGCAAGCGCCG RALTA_A2767 2934618 - 2934833 + | hypothetical protein RALTA_A2768 2935221 - 2934847 - | putative apaG protein associated with Co2+ and Mg2+ efflux rpe 2935479 - 2936180 + | D-ribulose-5-phosphate 3-epimerase RALTA_A2770 2936177 - 2936920 + | phosphoglycolate phosphatase trpE 2937358 - 2938875 + | ANTHRANILATE SYNTHASE COMPONENT I trpD_N_term 2938896 - 2939465 + | Anthranilate synthase component II trpD_C_term 2939462 - 2940556 + | ANTHRANILATE PHOSPHORIBOSYLTRANSFERASE PROTEIN trpC 2940583 - 2941386 + | INDOLE-3-GLYCEROL PHOSPHATE SYNTHASE PROTEIN RALTA_A2776 2941398 - 2942027 + | putative adenylate cyclase; CYTH family ung 2942057 - 2942830 + | uracil-DNA-glycosylase RALTA_A2778 2943121 - 2942843 - | putative acylphosphatase TERM 2412 2943137 - 2943157 + H 77 -12.5 -3.54475 | overlap 2943138 GGCCGTTTTCCCGTG AGCGCACGC GAC GCGTGCGCG TTCTGTCATCGACAC TERM 2413 2943138 - 2943156 + H 81 -16 -2.72471 | overlap 2943137 GCCGTTTTCCCGTGA GCGCACGC GAC GCGTGCGC GTTCTGTCATCGACA RALTA_A2779 2943427 - 2945181 + | putative Binding-protein-dependent transporter, inner membrane component RALTA_A2780 2945197 - 2946528 + | putative putative Binding-protein-dependent transporter,ATP_binding component RALTA_A2781 2948995 - 2946596 - | conserved hypothetical protein, DUF893 COG1289; putative TRANSMEMBRANE PROTEIN TERM 2414 2948922 - 2948896 - G 73 -16.6 -2.64155 | overlap 2948893 2948892 GGTCGCTGAAATGCA GCGCGATCAGCG TCG CGCCGATCACGC CCGTGGCCGAGCGCA RALTA_A2782 2950874 - 2949060 - | putative Peptidase M61, glycyl monoaminopeptidase RALTA_A2783 2951966 - 2950959 - | putative NADPH:quinone reductase, GroES-like domain TERM 2415 2951295 - 2951312 + g 71 -2.6 -4.57341 | GCCGACCGAATCGAT GACCGC GGCCCA GCGTTC TTTTTGCAGCGGCTT TERM 2416 2952053 - 2952022 - R 93 -14.4 -4.02132 | opp_overlap 2952050, overlap 2952025 2952028 TGGGAAAGCCAGAAA GCACAACGGCCGGA CAGG TCCGGCCGTCGCTC GAGCCGGGACAGGTC TERM 2417 2952050 - 2952025 - R 88 -16.9 -3.05274 | overlap 2952022 2952028 GAAAGCCAGAAAGCA CAACGGCCGGA CAGG TCCGGCCGTCG CTCGAGCCGGGACAG TERM 2418 2952047 - 2952028 - R 85 -15 -3.65317 | overlap 2952025 2952022 AGCCAGAAAGCACAA CGGCCGGA CAGG TCCGGCCG TCGCTCGAGCCGGGA RALTA_A2784 2952837 - 2952079 - | putative THIOL:DISULFIDE INTERCHANGE PROTEIN ubiF 2954181 - 2952892 - | 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol oxygenase RALTA_A2786 2954442 - 2954687 + | conserved hypothetical protein; putative exported protein TERM 2419 2954725 - 2954748 + F 100 -13.9 -4.68908 | TCCGACCACGATGCA CGGCCAAGG TTGATC CCTTGGCCG TTTGTTTTACCTGGG TERM 2420 2955495 - 2955471 - g 79 -11.4 -4.07568 | CGCCGTGCTGGAAAA GGCCCAGTCG GTGCT CGACCAGGCC AAGGCGGTTCGCACC RALTA_A2787 2954971 - 2956062 + | putative GTP-binding protein with nucleoside triP hydrolase domain, engD homolog TERM 2421 2956085 - 2956102 + T 100 -12.7 -4.8622 | opp_overlap 2956085 CAGACCCGTCAGGAA GCCCGCA GCGA TGCGGGC TTTTTCATTGGCGCG TERM 2422 2956102 - 2956085 - T 73 -12.7 -3.15249 | opp_overlap 2956085 CAGACCCGTCAGGAA GCCCGCA GCGA TGCGGGC TTTTTCATTGGCGCG RALTA_A2788 2956631 - 2956134 - | conserved hypothetical protein, COG4929; putative membrane-anchored protein RALTA_A2789 2957743 - 2956628 - | hypothetical protein TERM 2423 2956795 - 2956758 - G 75 -4.9 -4.58424 | TAGTACCAGATAAAA CCGATGGCA-ATGCTGG CGACGC CCAGCCCCTGCCA-CGG CATCGACGCCCGCCG TERM 2424 2957684 - 2957701 + g 74 -12.7 -3.61398 | CGGCTCGCCCTGTAC CTCGCCG CGCG CGGCGAG TTGTTGCCACAGGCG RALTA_A2790 2958786 - 2957740 - | hypothetical protein TERM 2425 2958684 - 2958741 + g 78 -17.8 -2.72344 | gap 3 CCGCAGCCGGGGCCA GGCGGCCGAGC-GCGCGCCAGTGGGCCAG TGC CTGGCGGA-TGGCGCGCCGCTC-GCCGAC TGCTTCGCGGTCCGG TERM 2426 2959593 - 2959624 + G 72 -3.5 -4.62872 | opp_overlap 2959562 GTGATGCGGACCATC TCCGACCGCGCCG ACGACA CGGCGCATGTGGA TTTTTCGGCATTCCT pfs 2958936 - 2959703 + | BIFUNCTIONAL: 5'-METHYLTHIOADENOSINE NUCLEOSIDASE AND S-ADENOSYLHOMOCYSTEINE NUCLEOSIDASE (MTA/SAH NUCLEOSIDASE) RALTA_A2793 2960043 - 2959774 - | hypothetical protein TERM 2427 2959913 - 2959870 - G 77 -11.7 -3.85698 | gap 1, overlap 2959873 2959897 CTGGCCGTCGACAAA CCAGTGCAGCGCGCGGCC GGTGTAGAA GGCCGC-CGCCGCACCCG CCGCGCCCAGCACCA TERM 2428 2959926 - 2959873 - G 78 -16.5 -3.00946 | overlap 2959870 2959897 GCCGTCGACAAACCA GTGCAGCGCGCGGCCGGTGTAGAAG GCCG CCGCCGCACCCGCCGCGCCCAGCAC CAGCGCGGCCGGCAG TERM 2429 2960251 - 2960220 - g 74 -16.6 -2.70936 | gap 1, opp_overlap 2960220, overlap 2960217 2960212 GCATCAATCACACTA CGGCACCCGTCTCGC TGC GCGAG-CGGGTGGCG TTTCCGCTCGAGCAG TERM 2430 2960220 - 2960251 + G 85 -16.6 -3.59979 | gap 1, opp_overlap 2960217 2960212 2960220 GCATCAATCACACTA CGGCACCCGTCTCGC TGC GCGAG-CGGGTGGCG TTTCCGCTCGAGCAG TERM 2431 2961050 - 2961103 + G 79 -15.1 -3.32498 | overlap 2961094 CCCATCATGATGGTC GACCTCGCCGTGCCGCGCGACGTCG AGCC CGAGGTCGCGCGCCTGGACGACGTC TTCCTCTATACCGTC hemA 2960186 - 2961490 + | glutamyl tRNA reductase prfA 2961590 - 2962672 + | peptide chain release factor RF-1 RALTA_A2796 2962865 - 2963194 + | putative LIPOPROTEIN TERM 2432 2963284 - 2963309 + F 100 -9 -5.24129 | gap 1 GCACCGCCCCCGAAG CCCCGCCAGGT CCCGC ACC-GGTGGGG TTTTTTGTAGCCGGC prmC 2963347 - 2964243 + | N5-glutamine methyltransferase, modifies release factors RF-1 and RF-2 TERM 2433 2964283 - 2964307 + F 72 -13.5 -2.70354 | overlap 2964280 TCGTTATCAGACTCC CGCCGTGCGGC CCG GCCGCACGGTA TCCCTTTCTCCCCAG RALTA_A2798 2964365 - 2964676 + | conserved hypothetical protein; putative monothiol glutaredoxin TERM 2434 2964968 - 2964998 + G 70 -9.1 -3.85817 | gap 2 TGGTGGCGCCCTGCT CCATGCGC-A-CGCT GGC GGCGATCGCGCATGG TTTCTCCGACAACCT ubiX2 2964685 - 2965308 + | 3-octaprenyl-4-hydroxybenzoate carboxy-lyase RALTA_A2800 2965572 - 2965363 - | putative lipoprotein TERM 2435 2965632 - 2965661 + r 74 -10 -3.6849 | opp_overlap 2965640, overlap 2965652 TTATACGGGTGGAAC GCGTAATACGGC GTCAAA GCCGTGTAACGC TTGTTACCGTTCCCT RALTA_A2801 2967224 - 2965707 - | putative NAD(+)-dependent aldehyde dehydrogenase; putative exported protein TERM 2436 2965812 - 2965829 + g 73 -10.5 -3.85698 | overlap 2965820 ATCGGAGCCTGATTC GCGGCCG CCGC CGGTCGC TTTCTCGCCGCCGAA TERM 2437 2966363 - 2966328 - G 73 -9.6 -3.91897 | gap 1, overlap 2966331 GTCGGCATGGATAAA GCAGCGGCGCAGCG-TG GTG CAGCGCTGCCCCGCGGT GCCGGCCGCGGCGAA RALTA_A2802 2968402 - 2967221 - | Putative saccharopine dehydrogenase/saccharopine reductase TERM 2438 2968011 - 2967974 - G 73 -10.5 -3.88291 | gap 1 GACCACGCCGATAAA GCCCGGCGCCAGT-CCGC ATT GCGGCATCAGCACCGAGC GCGCGCCCTGCGCCA RALTA_A2803 2968530 - 2968979 + | Putative transcriptional regulator, AsnC/Lrp family RALTA_A2804 2969025 - 2969834 + | Putative Dihydrodipicolinate reductase RALTA_A2805 2970609 - 2969878 - | conserved hypothetical protein; putative exported protein RALTA_A2806 2972295 - 2970781 - | Putative Chloride channel, voltage gated TERM 2439 2971406 - 2971368 - G 82 -16.6 -3.34398 | opp_overlap 2971381, overlap 2971366 2971369 2971404 GCGCCTTGGCAAACA CGCCGCCGAGCACGCCGG TGA CCAGCGCGCACAGCAGCA CCGGCCCCCAGGCTT TERM 2440 2971405 - 2971369 - G 77 -17.9 -2.60496 | opp_overlap 2971381, overlap 2971368 2971366 2971404 CGCCTTGGCAAACAC GCCGCCGAGCACGCCGG TGA CCAGCGCGCACAGCAGC ACCGGCCCCCAGGCT TERM 2441 2971655 - 2971668 + g 76 -2.3 -4.72272 | overlap 2971635 2971656 TTGGGATGGAAGCCG ATGCG AAAG CGCAG TTTTTCCTGGCACCA RALTA_A2807 2973396 - 2972380 - | conserved hypothetical protein, UPF0065 TERM 2442 2972770 - 2972800 + g 74 -13.9 -3.29144 | CTGCACGTCGTTGGC CAGCAGCGCCGCC AGCGC GGGGGCGCTGCCG TTGTAGGGCACGTGC TERM 2443 2973333 - 2973281 - G 74 -13.2 -3.28712 | gap 1, opp_overlap 2973321 2973322 GGGTGGTCCGGATAA GCGGCCTGCACGGTCC-CGCCCCAG ATGG CGAGCGCGCAGCCCGCGCCGGCCGC CAATGCGGCGAGCCA TERM 2444 2973340 - 2973356 + g 87 -9.3 -4.67982 | overlap 2973322 2973321 GCCGGCCGCCAATGC GGCGAGC CAG GCGCGCC TTTTGTTGGCTGCGG RALTA_A2808 2974942 - 2973449 - | putative o-succinylbenzoate--CoA ligase; Putative AMP-dependent synthetase and ligase TERM 2445 2974395 - 2974343 - G 77 -11.2 -3.85698 | opp_overlap 2974346, overlap 2974381 CGCGTTCTGGATAAA CGAGCC-CGGCGCGCTGTGGTACAGC GGC GCCG-ACATCAGCGCGCGGCAGCCCG GCTCCAGTCCGTAGG TERM 2446 2975428 - 2975440 + G 70 -9.1 -3.92542 | GAAGCATCCCGGCAT CACGC TGC GCGTG TTCTTTGCCAATCGC RALTA_A2809 2975069 - 2975983 + | Putative transcriptional regulator, LysR family TERM 2447 2976089 - 2976045 - f 89 -16 -3.53012 | gap 1, opp_overlap 2976036 CGGCCCGCCTGCAAA CTTGCGATTTGCAAGCTATGC TACA GC-CAGCTTGCAAATCGAAAG CAAGCAGCACTCAAC RALTA_A2810 2976116 - 2976631 + | Putative transcriptional regulator (DUF24); HxlR family RALTA_A2811 2976624 - 2977982 + | Putative Na+-driven multidrug efflux system, Multi Antimicrobial Extrusion (MATE) family RALTA_A2812 2979553 - 2978105 - | component of acridine efflux pump, outer membrane lipoprotein RALTA_A2813 2982738 - 2979550 - | component of acridine efflux pump, similar to acrB (RND family) TERM 2448 2979577 - 2979625 + g 75 -8.5 -4.19704 | TCCGGCCGATGGCCT GGCCTGGGGCGGGCCGTCGCC CGAGGTC GGCGCCGCACCGCCCGCCGCC TTTTCCCTGGGCTTG TERM 2449 2980123 - 2980144 + g 84 -7.2 -4.71426 | opp_overlap 2980123 GAAGGCGAAGACATA GACCGCCG TGGATC CTGCGGTC TTTTCTTCATAGGCC TERM 2450 2981608 - 2981590 - G 70 -8.8 -3.87815 | overlap 2981591 GCTCATGCCGACAAA GGCGCCGA TGA TCGACACC GGCACGGCAAGGATC RALTA_A2814 2983940 - 2982735 - | lipoprotein, component of acridine efflux pump, similar to acrA TERM 2451 2983827 - 2983862 + g 75 -10.3 -4.05446 | gap 1 CGCCACCGTCATGAC GCCGACCTCGGCCACG GGCGG CGCGGCCGGCG-CGGC TTTCTCCTTGCCGCA RALTA_A2815 2986588 - 2984189 - | Conserved hypothetical protein; putative exported protein TERM 2452 2985964 - 2986001 + g 77 -17.8 -2.63596 | gap 1, opp_overlap 2985952 2985977 2985979, overlap 2985959 ACAGTTCGCCGCCGG GCGCGCGCAGCAACAGC GCCCG GCTGTT-CAGCGCGCGC TCGTATGGCGTGCCG TERM 2453 2987266 - 2987302 + G 77 -15.7 -3.21416 | GCGCGCGCCAGGCCT GGCCGCCGGCAGCGCCG TGG CGGTGCCGCTGCTGGCC TTGCTGGTGACGCTG RALTA_A2816 2986940 - 2988088 + | Putative membrane-bound phosphoesterase RALTA_A2817 2989007 - 2988150 - | hypothetical protein; putative phosphoribosyltransferase TERM 2454 2989118 - 2989101 - R 100 -9.1 -5.67967 | opp_overlap 2989101 AGCACCATAAAAAAA CCAGGCC CGCA GACCTGG TTCTCTTGCTCGCTC RALTA_A2818 2990810 - 2989143 - | putative ATPase component of ABC transporter with duplicated ATPase domains TERM 2455 2990294 - 2990307 + g 75 -9.5 -4.07568 | opp_overlap 2990282 GCAGCAGGCGGCACA GCGCC ACGC GGCGC TTTTCGCCGCCGGAG RALTA_A2819 2990960 - 2991184 + | hypothetical protein TERM 2456 2991567 - 2991521 - g 78 -12.4 -3.68222 | opp_overlap 2991525, overlap 2991526 GCTCAAGGCCAAGAA GGAAATCC-GCGTCGCCTCGCT GTTCA AG-GAGGCGCCGCCGGAGTTCC TGCGCATGATCGTCG TERM 2457 2991562 - 2991526 - g 75 -9.5 -4.0802 | opp_overlap 2991525, overlap 2991521 AGGCCAAGAAGGAAA TCC-GCGTCGCCTCGCT GTTCA AG-GAGGCGCCGCCGGA GTTCCTGCGCATGAT RALTA_A2820 2991234 - 2991767 + | conserved hypothetical protein; putative metal dependent hydrolase RALTA_A2821 2992978 - 2991749 - | conserved hypothetical protein, COG3868 RALTA_A2823 2993055 - 2993957 + | putative Amidohydrolase 2 RALTA_A2824 2994001 - 2994915 + | putative Amidohydrolase 2 RALTA_A2825 2995018 - 2996460 + | putative UbiD-related decarboxylase, 3-octaprenyl-4-hydroxybenzoate carboxy-lyase TERM 2458 2996528 - 2996490 - f 90 -14 -4.10007 | opp_overlap 2996480 2996479, overlap 2996480 2996479 2996522 2996523 ATAACCCGCTGAAAA CGGCGGATTCATCGTT TCACCCG ATCGATAAATCCGCCG GGAACGTTGTACCTT RALTA_A2826 2996698 - 2998089 + | transporter; putative Xanthine/uracil permease RALTA_A2827 2999018 - 2998095 - | Putative transcriptional regulator, LysR family xdhB1 2999245 - 3000117 + | xanthine dehydrogenase, FAD-binding subunit xdhC1 3000105 - 3000617 + | xanthine dehydrogenase, Fe-S binding subunit TERM 2459 3002782 - 3002764 - g 74 -14.6 -3.01712 | GGGCGTGGGCGAAGA CCCGATCG TCG CGATCGGG CCGGCGATCGCCAAC xdhA1 3000614 - 3002905 + | xanthine dehydrogenase, molybdenum binding subunit ubiX1 3002902 - 3003498 + | 3-octaprenyl-4-hydroxybenzoate carboxy-lyase RALTA_A2832 3003553 - 3004659 + | putative GTPase; putative Cobalamin synthesis protein cobW homolog RALTA_A2833 3005698 - 3004691 - | Putative transcriptional regulator, AraC family TERM 2460 3005846 - 3005830 - H 73 -6.5 -4.3129 | GATGCAGTATCAAAA GCCACCG GCG CAATGGC TCCCAGCCATACATA TERM 2461 3006695 - 3006725 + G 100 -14.6 -4.77036 | overlap 3006697 3006698 CTGGTTTGGAGGCGG AAGGGGCGCGCCGG ATT TCGGCGCGCCCATC TTTTTCCTGGTCGCC TERM 2462 3006697 - 3006723 + G 100 -17.2 -4.00443 | overlap 3006695 3006698 GGTTTGGAGGCGGAA GGGGCGCGCCGG ATT TCGGCGCGCCCA TCTTTTTCCTGGTCG TERM 2463 3006698 - 3006722 + G 87 -20.7 -2.99543 | overlap 3006697 3006695 GTTTGGAGGCGGAAG GGGCGCGCCGG ATT TCGGCGCGCCC ATCTTTTTCCTGGTC RALTA_A2834 3006219 - 3007568 + | transporter, NCS2 family; putative Xanthine/uracil permease atzB 3007573 - 3008976 + | HYDROXY-ATRAZINE ETHYL AMINO HYDROLASE PROTEIN RALTA_A2836 3010992 - 3009076 - | Putative TRAP-type C4-dicarboxylate transport system, membrane component (fused dctD-dctM) TERM 2464 3010024 - 3009976 - G 74 -12.9 -3.54424 | overlap 3009979 CTTCATTTCGGGAAA CAGGCTCGGCGCCACGGCGGCCA TAT CGGCGGCCTTGGCGCCGGAGATG CCGGAAACGATATAC RALTA_A2837 3012008 - 3010989 - | Putative TRAP-type C4-dicarboxylate transport system, periplasmic component (dctP) TERM 2465 3011103 - 3011067 - G 76 -14.3 -3.48924 | opp_overlap 3011100 CCATTCGGCATAGAA TCCGGCGCCTTGCAGCA AGG CGCGGAATGGCGCCGGA TCGGGCTGGCCGAAG RALTA_A2838 3013489 - 3012044 - | Putative Mannitol dehydrogenase (Fructuronate reductase) TERM 2466 3012160 - 3012145 - G 83 -8.2 -4.56597 | GCTCGCTGCCAAAAA CCGGCG TATG CGCCAG TGCCCGCCTGACAGC rspA 3013759 - 3014967 + | starvation-sensing protein, putative enolase/dehydratase, mandelate racemase/muconate lactonizing enzyme family rspB 3015002 - 3016036 + | starvation-sensing protein, putative oxidoreductase, Zn-dependent and NAD(P)-binding RALTA_A2842 3016038 - 3016970 + | Putative carbohydrate kinase, pfkB family RALTA_A2843 3017112 - 3017432 + | hypothetical protein RALTA_A2844 3018231 - 3017470 - | putative RESPONSE REGULATOR, LytTr DNA-binding region TERM 2467 3017578 - 3017545 - G 70 -8.7 -3.87815 | gap 1, opp_overlap 3017569, overlap 3017547 GCGCATCCTGACAAA GAGCCGGCCCGACTCG TCA CGACGCGTGCCGGC-C ACGTATTCCATATTG TERM 2468 3017577 - 3017547 - G 73 -12.4 -3.52906 | opp_overlap 3017569, overlap 3017545 GCATCCTGACAAAGA GCCGGCCCGACTCG TCA CGACGCGTGCCGGC CACGTATTCCATATT RALTA_A2845 3019079 - 3018246 - | putative signal transduction histidine kinase, LytS C_term similar TERM 2469 3018738 - 3018684 - G 73 -16 -2.52464 | gap 3, opp_overlap 3018696, overlap 3018696 GCTGGCGGCAAGCGA CGCG-CGCAGATAGGCGATGA-AATGC TCCA GCATCATCGTCGCCT-TCTGCGGCGCG GGCTCGATCAGGCTG RALTA_A2846 3019894 - 3019307 - | putative transcriptional regulator, TetR/AcrR families TERM 2470 3020006 - 3019955 - H 73 -2.8 -4.80882 | gap 1, overlap 3019958 3019971 ACGCGACACCAAAAA CCACCGGCCG-GACAACGCGGGA TCAGTCG TCCCGCTCTGCCACGTTCGGAAG TGTAGCCCAAAAACA TERM 2471 3020419 - 3020473 + G 72 -4.1 -4.66537 | gap 2, opp_overlap 3020409, overlap 3020420 ATAAACCCATCATCG CCGCCGTGCAG-GGCAGCG-CGATCGG GGG CGGCACGACGCTGCTGCTGCATTGCGA TTTTGTGTTCGCGGC RALTA_A2847 3020124 - 3020900 + | putative ENOYL-COA HYDRATASE RALTA_A2848 3021002 - 3022489 + | Acetyl/propionyl-CoA/pyruvate/biotin carboxylase, alpha subunit RALTA_A2849 3022489 - 3022986 + | putative acyl-CoA carboxylase, Biotin/lipoyl carrier domain TERM 2472 3023318 - 3023340 + G 72 -15.6 -2.89881 | opp_overlap 3023318 3023320, overlap 3023320 GGTGCTGGCCAACGA CAGCGCCATC AAG GGTGGCGCTG TCTATCCGCTGGGTG RALTA_A2850 3022989 - 3024590 + | putative PROPIONYL-COA CARBOXYLASE (BETA SUBUNIT) PROTEIN TERM 2473 3025227 - 3025204 - g 71 -2.2 -4.58395 | TTCATCGTCGAAAAA GGCTTCCCTG GCTT CAGCGTCGCC CAGAAGCTGAACAAG RALTA_A2851 3024622 - 3025809 + | Isovaleryl-CoA dehydrogenase TERM 2474 3027420 - 3027410 - g 72 -3.2 -4.64657 | overlap 3027401 GGAAAGGTGCAAAAA CACA TTC TGCG CAAGCAATACGAGAA RALTA_A2852 3025877 - 3027460 + | Putative Long-chain-fatty-acid-CoA ligase synthetase, AMP-dependent synthetase and ligase family TERM 2475 3027572 - 3027530 - T 86 -12 -4.15006 | opp_overlap 3027532, overlap 3027534 3027537 ATATCGACCGCAAAA GGCACAAGGGGTTACACGGA AAT TCCCTGTAACCCCTTGAGTT ATCTGGTGCCGGCTG TERM 2476 3027532 - 3027570 + T 100 -19 -3.54475 | opp_overlap 3027530 3027534 3027537 ATCGACCGCAAAAGG CACAAGGGGTTACACGGA AAT TCCCTGTAACCCCTTGAG TTATCTGGTGCCGGC TERM 2477 3027568 - 3027534 - T 90 -20.2 -2.75577 | opp_overlap 3027532, overlap 3027530 3027537 CGACCGCAAAAGGCA CAAGGGGTTACACGGA AAT TCCCTGTAACCCCTTG AGTTATCTGGTGCCG TERM 2478 3027565 - 3027537 - T 89 -16.1 -3.52113 | opp_overlap 3027532, overlap 3027534 3027530 CCGCAAAAGGCACAA GGGGTTACACGGA AAT TCCCTGTAACCCC TTGAGTTATCTGGTG sspB 3028191 - 3027703 - | stringent starvation protein B, ClpXP protease specificity-enhancing factor TERM 2479 3027734 - 3027791 + g 70 -15.6 -2.7186 | gap 3, overlap 3027743 AGTGCGGGCTTCTTG CCGCCGATGCGCGGCACCGGG-GGCGGCG TGT CGTCGTCGCCCGG-GCCG-GTGTCGCTGG TGGTTGCCGGGGTTT sspA 3028861 - 3028250 - | stringent starvation protein A, regulator of transcription TERM 2480 3028492 - 3028526 + g 72 -4.8 -4.48987 | overlap 3028465 3028484 3028476 3028480 CGCGGATCGCGGCGC GGGCGCGTTCGTGG TTCTTTT CCGCGGCCTTGCCC TTTTCGTTCTCCAGC TERM 2481 3028997 - 3029042 + r 71 -12.5 -3.05384 | gap 1, opp_overlap 3029000, overlap 3028985 GAAGCGCTACCCGTA AAAGACAAGGGGCGGC-GCTGT TCA ACAGCGGCCGCCCCTTGCCCGG TTGGATAAGGGCCCG TERM 2482 3029039 - 3029000 - R 100 -25.2 -4.11216 | gap 1, opp_overlap 3028985 3028997 GCGCTACCCGTAAAA GACAAGGGGCGGC-GCTGT TCA ACAGCGGCCGCCCCTTGCC CGGTTGGATAAGGGC petC 3029820 - 3029077 - | CYTOCHROME bC1 complex (ubiquinol:ferricytochrome c oxidoreductase), transmembrane subunit petB 3031260 - 3029857 - | CYTOCHROME bC1 complex (ubiquinol:ferricytochrome c oxidoreductase), transmembrane subunit TERM 2483 3030511 - 3030535 + g 75 -6.3 -4.39133 | GTAGTACGGGTGGAA CGGGATGCCGT CCA GCGGGATACCG TTTTCGTCCTTCTTG TERM 2484 3030990 - 3030934 - G 75 -10.1 -4.00782 | overlap 3030937 GTAGACCACGACAAA GAAG-GCCGAGGCGCCGGTCGAGTGCA TGTAG CGCACCAG-CCAGCCCCACGGCACTTC GCGCATGATGTATTC TERM 2485 3031232 - 3031242 + g 70 -3.2 -4.40561 | overlap 3031212 3031210 CAGCCCAGCAGGCCG GTCG TCT TGAC TTGTTTTTCGGCCGC petA 3031880 - 3031263 - | CYTOCHROME bC1 complex (ubiquinol:ferricytochrome c oxidoreductase), , Rieske iron-sulfur subunit mscL 3032101 - 3032520 + | mechanosensitive channel, The Large Conductance Mechanosensitive Ion Channel (MscL) Family TERM 2486 3032564 - 3032538 - T 78 -15.2 -2.73542 | opp_overlap 3032538 3032543, overlap 3032543 CCGAACCCCGAACGA TAAAACGGCCCC GCT GGGGCCGTTTTG TTTTTTATCAGATCA TERM 2487 3032538 - 3032564 + T 100 -17.4 -5.26316 | opp_overlap 3032538 3032543, overlap 3032543 CCGAACCCCGAACGA TAAAACGGCCCC GCT GGGGCCGTTTTG TTTTTTATCAGATCA TERM 2488 3032559 - 3032543 - T 100 -15.1 -4.5442 | opp_overlap 3032538 3032543, overlap 3032538 CCCCGAACGATAAAA CGGCCCC GCT GGGGCCG TTTTGTTTTTTATCA TERM 2489 3032543 - 3032559 + T 100 -15.1 -5.49579 | opp_overlap 3032543 3032538, overlap 3032538 CCCCGAACGATAAAA CGGCCCC GCT GGGGCCG TTTTGTTTTTTATCA RALTA_A2859 3033323 - 3032577 - | conserved hypothetical protein, DUF34 COG0327 RALTA_A2860 3033344 - 3034537 + | membrane associated serine endoprotease TERM 2490 3034586 - 3034569 - T 81 -12.7 -3.76402 | opp_overlap 3034569 ACCGGAGTCAGCAAA CCCGCCA GCGA TGGCGGG TTTTTTTATGGCTGC TERM 2491 3034569 - 3034586 + T 100 -12.7 -5.64274 | opp_overlap 3034569 ACCGGAGTCAGCAAA CCCGCCA GCGA TGGCGGG TTTTTTTATGGCTGC TERM 2492 3034930 - 3034895 - T 100 -20.6 -4.42788 | opp_overlap 3034900, overlap 3034900 TCGAATTGCACAAAA GAAAACGCCGGCATCC TTAC GGATGCCGGCGTTTTT CAAGCCAACCTTCAG TERM 2493 3034900 - 3034925 + T 100 -20.5 -4.56597 | opp_overlap 3034900 3034895 TTGCACAAAAGAAAA CGCCGGCATCC TTAC GGATGCCGGCG TTTTTCAAGCCAACC TERM 2494 3034925 - 3034900 - T 100 -20.5 -5.18371 | opp_overlap 3034900, overlap 3034895 TTGCACAAAAGAAAA CGCCGGCATCC TTAC GGATGCCGGCG TTTTTCAAGCCAACC RALTA_A2861 3036124 - 3034967 - | putative porin tatC 3037101 - 3036295 - | twin-arginine translocase subunit, sec-independent protein export tatB 3037745 - 3037224 - | Sec-independent protein translocase protein tatB homolog TERM 2495 3037828 - 3037854 + r 74 -5.7 -4.42238 | opp_overlap 3037825, overlap 3037829 GCGTGGAAGGGAGGC ATGCCGCCGGC TTATT GCTGGCGGGAC TTTTCCTTGGCGTCG tatA 3038069 - 3037839 - | twin-arginine translocase subunit, sec-independent protein export, tatA/E homolog TERM 2496 3038137 - 3038166 + r 74 -12.1 -3.48395 | gap 1 TTCCGTCCCGTGATG GCCGCGCCGGGCGA CGG TTGC-CGGCGCAGC TTCTGTCCGGGCGCT RALTA_A2865 3038576 - 3038220 - | conserved hypothetical protein; putative nucleotide-binding protein, Histidine Triad (HIT) motif RALTA_A2866 3039039 - 3038647 - | conserved hypothetical protein, COG3671; putative TRANSMEMBRANE PROTEIN hisE 3039470 - 3039099 - | Phosphoribosyl-ATP pyrophosphatase hisI 3039871 - 3039467 - | PHOSPHORIBOSYL-AMP CYCLOHYDROLASE PROTEIN hisF 3040644 - 3039874 - | imidazole glycerol phosphate synthase, subunit with HisH TERM 2497 3040675 - 3040708 + r 72 -12.4 -3.28745 | gap 2, overlap 3040687 CCACCGCTGCCGTGC CGGCAGCGGCCGGGCG GCCG CGCCCG-CGGC-GCCG TTGCCTTATTGCCCG TERM 2498 3040687 - 3040713 + r 81 -13.6 -3.63515 | overlap 3040675 TGCCGGCAGCGGCCG GGCGGCCGCGCC CGC GGCGCCGTTGCC TTATTGCCCGTCGCG hisA 3041460 - 3040714 - | N-(5'-phospho-L-ribosyl-formimino)-5-amino-1-(5'-phosphoribosyl)-4-imidazolecarboxamide isomerase hisH 3042271 - 3041618 - | imidazole glycerol phosphate synthase, glutamine amidotransferase subunit with HisF RALTA_A2872 3042891 - 3042268 - | conserved hypothetical protein; putative antibiotic resistance protein MarC family hisB 3043571 - 3042984 - | IMIDAZOLEGLYCEROL-PHOSPHATE DEHYDRATASE hisC1 3044676 - 3043576 - | HISTIDINOL-PHOSPHATE AMINOTRANSFERASE PROTEIN TERM 2499 3044514 - 3044560 + g 73 -7.6 -4.1899 | overlap 3044515 GCGCCACCTCGCCCA GCCGCTCGGCCAGTTGCCGGCG CAG CGCGGGCGGCAGGCGGTACGGA TTTTCCATCGCGTCG hisD 3046042 - 3044705 - | HISTIDINOL DEHYDROGENASE OXIDOREDUCTASE PROTEIN TERM 2500 3045827 - 3045858 + g 78 -16.6 -3.06696 | gap 1 CTCCAGCGCGCCCAT CGACGCCGCCTCGAC GCG GTCGAAGCGGCG-CG TGTATTCCAGCACCG hisG 3046748 - 3046074 - | hetero-octameric ATP phosphoribosyl transferase, ATP phosphoribosyltransferase subunit TERM 2501 3046478 - 3046488 + g 75 -8.2 -4.18018 | TCGGCGCGTACAGTC CGGC CAT GCCG TTTTCCATCAGCACG murA 3048019 - 3046769 - | UDP-N-acetylglucosamine 1-carboxyvinyltransferase TERM 2502 3048031 - 3048055 + r 74 -10 -3.78934 | gap 1, overlap 3048031 3048033 CCATGTTCTATGGTC TGG-GCCGGGC ACGC GCCCGGCATCA TTGTTCTGGAGCCGC TERM 2503 3048031 - 3048086 + r 70 -10.1 -3.65036 | overlap 3048031 3048033 3048064 3048067 3048071 CCATGTTCTATGGTC TGGGCCGGGCACGCGCCCGGCATCA TTGTTC TGGAGCCGCGCGCAGGCGCGGCGCG TTGTGCTTTACTTGC RALTA_A2878 3048342 - 3048094 - | putative transcriptional regulator, BolA family RALTA_A2879 3049215 - 3048394 - | putative ABC transporter, membrane component RALTA_A2880 3050162 - 3049212 - | putative ABC transporter, atp_binding component TERM 2504 3050093 - 3050073 - G 72 -3.2 -4.60487 | overlap 3050075 GAGCAGCCCGAAAAA TTCGCCGC GTTCG ACGGTGAA GCTGACGCCCTTGAG RALTA_A2881 3050731 - 3050423 - | conserved hypothetical protein; putative Anti-sigma factor antagonist TERM 2505 3050801 - 3050781 - R 100 -14 -4.88918 | GGATCTGAAACAAAA GCTCCCGC GCGGG GCGGGAGC CTGTGCCGCGAACGG RALTA_A2882 3051506 - 3050877 - | putative ABC_type toluene transporter, auxiliary component RALTA_A2883 3052629 - 3051706 - | LIPOPROTEIN PRECURSOR VACJ-like RALTA_A2884 3053138 - 3052626 - | putative ABC-type transporter, periplasmic binding component TERM 2506 3052651 - 3052695 + g 71 -10.6 -3.78934 | gap 2, overlap 3052671 3052677 TCTCCAGCCGGCGCC GGCGCACTGGCGCCGGTGGACG AGC CG-CCGCCGGCATCGGCG-GCC TTGTTGTACAGGAAC RALTA_A2885 3054011 - 3053232 - | conserved hypothetical protein, DUF140; Putative abc-type transporter, membrane component TERM 2507 3053883 - 3053871 - G 90 -4.8 -5.24129 | overlap 3053873 3053874 GTTGCCGACAAAAAA GACC TGGTC GGTC ACCAGCCGGAAGCGG RALTA_A2886 3054838 - 3054020 - | putative ABC transporter, atp_binding component TERM 2508 3054964 - 3054992 + r 93 -17.5 -3.53012 | opp_overlap 3054985, overlap 3054956 3054952 TGGTCGCCGGGCAAT CTGGCCGATTTCC GCT GGAAAGCGGCCAG TTTCCCGCCACGCCG RALTA_A2887 3056108 - 3055017 - | conserved hypothetical protein, UPF0065 RALTA_A2888 3056328 - 3056867 + | Putative GCN5-related N-acetyltransferase TERM 2509 3056923 - 3056899 - T 100 -15 -5.88565 | gap 1, opp_overlap 3056899 GGCATAAGAAAAAAA GCCCGCC-GGC TTGC GCCAGGCGGGC TTTTTGTCGCGACGG TERM 2510 3056899 - 3056923 + T 100 -15 -4.82901 | gap 1, opp_overlap 3056899 GGCATAAGAAAAAAA GCCCGCC-GGC TTGC GCCAGGCGGGC TTTTTGTCGCGACGG gltD 3058412 - 3056949 - | glutamate synthase, small subunit, nucleotide-binding, 4Fe-4S protein TERM 2511 3057948 - 3057990 + g 74 -13.3 -3.28712 | gap 1, overlap 3057949 CTGTGCGGCCGCCAT G-CCGGCGGGGCCGGAGCCG ACCA CGGCGACGGTCTTGCCGGTC TTGTGGCGCGGCAAC TERM 2512 3057949 - 3057988 + g 85 -17 -3.21276 | overlap 3057948 TGTGCGGCCGCCATG CCGGCGGGGCCGGAGCCG ACCA CGGCGACGGTCTTGCCGG TCTTGTGGCGCGGCA TERM 2513 3058484 - 3058508 + r 93 -20.7 -3.10677 | overlap 3058477 3058470 GTCAGTATCTTGTCA GGGCCGCGGCG GCT TGCCGCGGCCC TTCGCTACGTTGGTT gltB 3063356 - 3058542 - | glutamate synthase, large subunit RALTA_A2891 3064358 - 3063639 - | conserved hypothetical protein, putative inactivated transposase (CGO1943) dgt 3065555 - 3064413 - | deoxyguanosine triphosphate triphosphohydrolase aroB 3066710 - 3065604 - | 3-dehydroquinate synthase TERM 2514 3065679 - 3065703 + g 71 -2.8 -4.57073 | gap 1 GTCCGCGTCCGGCAC GCT-GGTGATG AACG CCTCGCCGAGC TTTTTCAGCAGGATG aroK 3067474 - 3066707 - | shikimate kinase I TERM 2515 3067236 - 3067211 - G 77 -3.9 -4.74103 | gap 1, opp_overlap 3067231, overlap 3067213 GTCGGAATCGAAAAA CGGATAGTGCAG GCG CCGCGCCA-CCG TGCGGCCCACGGTGG TERM 2516 3067582 - 3067561 - R 100 -15.9 -6.06723 | GCGGCGAAAAAAAAA GGCCGCATC TGCC GATGCGGCC TGCCAGTCTACTGTA pilQ 3069745 - 3067613 - | Fimbrial type IV assembly protein pilQ precursor TERM 2517 3069753 - 3069773 + r 73 -3.1 -4.79451 | opp_overlap 3069731 3069728, overlap 3069754 3069756 GGGGTCATGCCGCCG CGTCCAGCT TCA GGCTGGTCA TTTTCTCTTTCCACT pilP 3070290 - 3069742 - | FIMBRIAL TYPE-4 ASSEMBLY LIPOPROTEIN TERM 2518 3070311 - 3070332 + r 93 -18.7 -3.17075 | overlap 3070316 3070324 3070326 ACCTCCCGCCTTGGC GGCCGCCGC CGCC GCGGCGGCC TTGCGTTGCGCCGCC pilO 3070958 - 3070287 - | FIMBRIAL TYPE-4 ASSEMBLY TRANSMEMBRANE PROTEIN TERM 2519 3070653 - 3070686 + g 77 -11.7 -3.84406 | gap 1, overlap 3070655 CTTGTTGGGCAACTG GC-GCTCCAGCAGCGC CAC GCGCTGCTCGACCTGC TTCTTCTGCTCGCGC pilN 3071626 - 3070961 - | FIMBRIAL TYPE-4 ASSEMBLY TRANSMEMBRANE PROTEIN pilM 3072714 - 3071644 - | FIMBRIAL TYPE-4 ASSEMBLY PROTEIN TERM 2520 3071733 - 3071768 + g 70 -14.8 -2.79589 | overlap 3071724 3071730 3071728 TGACCTTGGCGTTGG TCGCCATGTTGGCGAA CGGA TTCGCCAGCGTGGTGG TGATCTTGGTCTGGT TERM 2521 3072579 - 3072603 + g 71 -2.9 -4.57073 | gap 2, overlap 3072540 CATCGGCAACGGCAT TGCGGTCCAGC AGTTC GCTGG-C-GCA TTTTTCCAGCCGGTA TERM 2522 3074988 - 3075018 + G 73 -10.3 -3.85698 | opp_overlap 3074963 3074964, overlap 3074989 ACGCGCCGGCACCGA CGCCGTGCGGGTG CTCGA CGCGCGCACGGCC TTTATCGCCGACACC TERM 2523 3075373 - 3075357 - g 100 -15.1 -4.63932 | GACCTTCGAAGAAAA CGCCGGC GGC GCCGGCG TGGCGTCGGTGGGCC mrcA 3073114 - 3075489 + | bifunctional penicillin-binding protein 1a: transglycosylase (N-terminal); transpeptidase (C-terminal) TERM 2524 3075508 - 3075535 + T 74 -9.9 -3.78934 | opp_overlap 3075465 3075513, overlap 3075513 CGCTCGCCAGACAGC AAAAAGCCGGC CGCGAC GCCGGCTTTTC TTCTTGTGCGCCAGG TERM 2525 3075530 - 3075513 - T 100 -9.8 -4.84527 | opp_overlap 3075508 3075513 GCCAGACAGCAAAAA GCCGGC CGCGAC GCCGGC TTTTCTTCTTGTGCG TERM 2526 3075513 - 3075530 + T 100 -9.8 -4.95547 | opp_overlap 3075513, overlap 3075508 GCCAGACAGCAAAAA GCCGGC CGCGAC GCCGGC TTTTCTTCTTGTGCG cyaY 3075906 - 3075571 - | CYAY PROTEIN, frataxin, iron-binding and oxidizing protein TERM 2527 3075923 - 3075968 + H 100 -7.6 -5.7946 | gap 3, opp_overlap 3075914 CTAAACTCCGAGACC GCCGTTGCCGCCGC-T--GCCCG GAC CGGGCGTACGTGGCGAGAACGGC TTTTTTTGTTAAGAA RALTA_A2902 3076052 - 3076273 + | putative lipoprotein lysA 3076276 - 3077535 + | DIAMINOPIMELATE DECARBOXYLASE PROTEIN RALTA_A2904 3078245 - 3077562 - | conserved hypothetical protein, UPF0191 TERM 2528 3077971 - 3077950 - G 70 -3.7 -4.52669 | gap 1, overlap 3077951 AAGAACGCAAACAAA CCCAGCATGC GCC GCAT-CCGGA TCAGCCAGTTCCAGC RALTA_A2905 3079261 - 3078260 - | putative molybdopterin binding Oxidoreductase, putative transmembrane protein TERM 2529 3079167 - 3079124 - G 70 -15.2 -2.70932 | gap 1 CTGGCGCGCGAACCA CGGCGCCAGCGTGCCGCCGGC GGC ACCGGCAGCG-GCCAGCGCCA GCATGCGGCGGCGCG TERM 2530 3079430 - 3079384 - R 77 -12.9 -3.53811 | opp_overlap 3079408 GTGATGCTGCCGAAA CGACGCGGCAGCGGCACCT TCGCGTACC AGGTGCCGCAAGCGCGGCG CGGTGCGCTATCCGC RALTA_A2906 3080301 - 3079438 - | putative transmembrane transcriptional regulator (anti-sigma factor) RALTA_A2907 3080837 - 3080298 - | putative RNA POLYMERASE SIGMA FACTOR, TRANSCRIPTION REGULATOR PROTEIN RALTA_A2908 3081326 - 3080889 - | putative lipoprotein TERM 2531 3081445 - 3081464 + r 72 -7.8 -4.18018 | opp_overlap 3081447, overlap 3081447 AAAGTCAAAAAAAAA AACCTGCC CGAA GGCAGGTC TTTTGCATGGCAGCA TERM 2532 3081462 - 3081447 - R 100 -10.4 -6.60575 | opp_overlap 3081445 3081447 AGTCAAAAAAAAAAA CCTGCC CGAA GGCAGG TCTTTTGCATGGCAG TERM 2533 3081447 - 3081462 + r 74 -10.4 -3.69216 | opp_overlap 3081447, overlap 3081445 AGTCAAAAAAAAAAA CCTGCC CGAA GGCAGG TCTTTTGCATGGCAG RALTA_A2909 3082687 - 3081488 - | putative CYTOCHROME C-TYPE BIOGENESIS TRANSMEMBRANE PROTEIN RALTA_A2910 3084911 - 3082704 - | putative CYTOCHROME C-TYPE BIOGENESIS TRANSMEMBRANE PROTEIN, ResB-like family TERM 2534 3082866 - 3082890 + g 79 -7.8 -4.4078 | gap 1, overlap 3082840 GCCGTCGCCGGTGTG GCCCG-TGGCG GACG CGTCGGCGGGC TTTTCCTTCACCCAG TERM 2535 3083333 - 3083347 + g 74 -12.8 -3.53811 | opp_overlap 3083327 CCGCGAACAGGTCGA GCGCGC GCA GCGCGC TTTCGGCCAGCTGCC TERM 2536 3083352 - 3083376 + g 73 -12.2 -3.40403 | gap 1, opp_overlap 3083327 GCGCAGCGCGCTTTC GGCC-AGCTGC CGGC GCAGCTCGGCC TTGTCGTCACCAGGC TERM 2537 3083820 - 3083856 + g 71 -10.8 -3.61398 | gap 1 CTCCACCGTGAGCCC GTCGCTGTCC-GCGCTG GTGC CGGTGCCGGCCAGCGGC TTGTTGCCGCCCACC TERM 2538 3084956 - 3084986 + r 85 -10.5 -4.3208 | gap 1, opp_overlap 3084956 CTGGAAATGAATAAA GGGTGGACATGCTT TGGC AAGCAGG-CCACCC TTTTCGATTGTGACA TERM 2539 3084986 - 3084956 - R 95 -10.5 -4.39696 | gap 1, opp_overlap 3084956 CTGGAAATGAATAAA GGGTGGACATGCTT TGGC AAGCAGG-CCACCC TTTTCGATTGTGACA RALTA_A2911 3085759 - 3085100 - | putative OXIDOREDUCTASE CYTOCHROME C4 class yihA 3086257 - 3086970 + | GTPase binding protein, involved in coordination of cell cycle TERM 2540 3087018 - 3086997 - f 100 -7.9 -5.75342 | overlap 3086998 3087013 GGCGCGCAAAAAAAA GCCCCGTCG CAAG CAACGGGGA CAAACTTTCCCGCCG TERM 2541 3087017 - 3086998 - f 82 -11.4 -4.04482 | overlap 3086997 3087013 GCGCGCAAAAAAAAG CCCCGTCG CAAG CAACGGGG ACAAACTTTCCCGCC hemB 3087222 - 3088214 + | 5-aminolevulinate dehydratase (porphobilinogen synthase) TERM 2542 3088267 - 3088295 + G 86 -13.8 -3.83026 | overlap 3088281 3088284 GCGAGCCAGGTACAC CCGCTCGCCTCG CTCAC CGAGGCGGGCAG TTTCCTGTCAGGCAA RALTA_A2914 3088231 - 3089454 + | Putative magnesium Mg(2+)/cobalt Co(2+) transport protein dipZ1 3091401 - 3089485 - | thiol:disulfide interchange protein, cytochrome c-type biogenesis, N-terminal interacts with and activates DsbC TERM 2543 3089829 - 3089878 + g 72 -9.1 -4.07885 | gap 1 CGCGGGCGTCGAGTT CGGCGACGCTGCGCACGCGCT-CG AAG CGCACCGTCTGCGCACCGCCGGCG TTTTCGCCGACAGTC TERM 2544 3091191 - 3091162 - G 70 -4.2 -4.4078 | gap 1 CGCGGCGAAGGAAAA GCGCTCGCGGTAC ATGTA GTAGCCCG-GCGC GACGTCAAAGCGGAC cutA1 3091808 - 3091398 - | DIVALENT CATION TOLERANCE PROTEIN TERM 2545 3091877 - 3091856 - R 100 -15.9 -5.18371 | opp_overlap 3091854 3091858 CCGCACAAAACAAAA GAGCCAGGC GGAT GCCTGGCTC GATTGTAAGCGGTGT rplQ 3092329 - 3091934 - | 50S ribosomal subunit protein L17 TERM 2546 3092406 - 3092429 + r 70 -11.6 -3.16564 | opp_overlap 3092407 GGCCGGTAGTCATAC ATGCCCCGGC CGGA GCCGGGGCGG TTGCTGCGGTGCGGG TERM 2547 3092428 - 3092407 - R 70 -12.9 -2.91264 | opp_overlap 3092406 GCCGGTAGTCATACA TGCCCCGGC CGGA GCCGGGGCG GTTGCTGCGGTGCGG rpoA 3093445 - 3092465 - | RNA polymerase, alpha subunit; RNA polymerase alpha chain family rpsD 3094234 - 3093611 - | 30S ribosomal subunit protein S4 TERM 2548 3094469 - 3094446 - R 100 -13.2 -4.68645 | GACGCAAAACGAAAA CCTGCCGCAT TAAA ATGCAGCAGG TCAACGCGCGATGCT TERM 2549 3094524 - 3094491 - R 75 -14.5 -2.79796 | overlap 3094498 3094510 3094511 CGCGATGCTACCATA TCCGAAACCGGCAGG TAAA CCCGCCGGGCCCGGA CACGCCAACGCATCA TERM 2550 3094517 - 3094498 - R 77 -12.8 -3.64599 | overlap 3094491 3094510 3094511 CTACCATATCCGAAA CCGGCAGG TAAA CCCGCCGG GCCCGGACACGCCAA rpsK 3094935 - 3094537 - | 30S ribosomal subunit protein S11 rpsM 3095325 - 3094960 - | 30S ribosomal subunit protein S13 infA 3095710 - 3095492 - | Translation initiation factor IF-1 secY 3097077 - 3095734 - | preprotein translocase, membrane component, transport across inner membrane (General Secretory Pathway) rplO 3097559 - 3097125 - | 50S ribosomal subunit protein L15 rpmD 3097761 - 3097579 - | 50S ribosomal subunit protein L30 rpsE 3098290 - 3097772 - | 30S ribosomal subunit protein S5 TERM 2551 3098258 - 3098269 + g 75 -5.8 -4.45151 | GCCGTCGTCGCGTTC GTCC TGTT GGAC TTTTGCTTGCATCTT rplR 3098671 - 3098312 - | 50S ribosomal subunit protein L18 TERM 2552 3098641 - 3098656 + g 70 -3.9 -4.49316 | GGGTCTGACGTGCAC GGCGC AAACGA GCGTC TTTCTTGTTCATCAT rplF 3099213 - 3098680 - | 50S ribosomal subunit protein L6 rpsH 3099619 - 3099224 - | 30S ribosomal subunit protein S8 rpsN 3099952 - 3099647 - | 30S ribosomal subunit protein S14 rplE 3100504 - 3099962 - | 50S ribosomal subunit protein L5 TERM 2553 3100336 - 3100346 + g 75 -8.2 -4.23723 | overlap 3100334 CGATCTTGGTCAGGT CGCC CAC GGCG TTTTCAATGATCTTC rplX 3100838 - 3100530 - | 50S ribosomal subunit protein L24 rplN 3101216 - 3100848 - | 50S ribosomal subunit protein L14 TERM 2554 3101475 - 3101434 - R 85 -10.3 -4.2528 | overlap 3101435 GGCGAACGCAATAAA GCGGAAGTCCAGGATTATA GCTA CATAATCCTGGACTTGCAA GTCAAGCTAAGAACG TERM 2555 3101474 - 3101435 - R 76 -13.8 -3.14686 | overlap 3101434 GCGAACGCAATAAAG CGGAAGTCCAGGATTATA GCTA CATAATCCTGGACTTGCA AGTCAAGCTAAGAAC rpsQ 3101777 - 3101499 - | 30S ribosomal subunit protein S17 rpmC 3101968 - 3101774 - | 50S ribosomal subunit protein L29 rplP 3102396 - 3101980 - | 50S ribosomal subunit protein L16 TERM 2556 3102319 - 3102354 + g 72 -8.2 -4.02022 | opp_overlap 3102318 3102319, overlap 3102329 3102349 TTCGCCGAAAGACAC GGCGTTACCACGGGTA GCCT TACCCGTGTTGCGGCC TTTCTGCTCCTTGCG rpsC 3103196 - 3102399 - | 30S ribosomal subunit protein S3 rplV 3103535 - 3103206 - | 50S ribosomal subunit protein L22 rpsS 3103820 - 3103545 - | 30S ribosomal subunit protein S19 rplB 3104673 - 3103843 - | 50S ribosomal subunit protein L2 rplW 3104990 - 3104676 - | 50S ribosomal subunit protein L23 rplD 3105607 - 3104987 - | 50S ribosomal subunit protein L4, regulates expression of S10 operon rplC 3106270 - 3105620 - | 50S ribosomal subunit protein L3 TERM 2557 3106443 - 3106425 - R 71 -11 -3.4678 | AGCCTTACACTATAA CCCTTCCC CGA GGAAAGGG CAATAAGCAATTGCG RALTA_A2946 3107061 - 3106561 - | putative flavoprotein oxygenase RALTA_A2947 3108304 - 3107063 - | putative OXYGENASE; putative exported protein TERM 2558 3107757 - 3107737 - G 70 -8.2 -3.91084 | overlap 3107738 3107747 TCAGGTTGAAGCAAA CCCGCGAG AACGG CTCGCGCG GCAGCATGCCGGTCA RALTA_A2948 3109126 - 3108338 - | putative dehydrogenase/reductase; putative transmembrane protein RALTA_A2949 3110431 - 3109202 - | putative Carboxymethylenebutenolidase (Dienelactone hydrolase) (DLH) TERM 2559 3110551 - 3110528 - H 76 -11 -3.74693 | overlap 3110529 3110531 CCGCACCGCAGCAAA CTAGCCGCTG GCTG CAGCGGCTAT CCGATTAGTGCAGGA TERM 2560 3110550 - 3110529 - H 77 -14.5 -2.84602 | overlap 3110528 3110531 CGCACCGCAGCAAAC TAGCCGCTG GCTG CAGCGGCTA TCCGATTAGTGCAGG TERM 2561 3110548 - 3110531 - H 71 -12.7 -2.97171 | overlap 3110529 3110528 CACCGCAGCAAACTA GCCGCTG GCTG CAGCGGC TATCCGATTAGTGCA RALTA_A2950 3110714 - 3111724 + | putative TRANSCRIPTIONal REGULATOR, AraC family TERM 2562 3111763 - 3111782 + T 100 -13.6 -4.2828 | opp_overlap 3111763 GCCACCAAACAAAAA CGGCGAAC CGAG GTTCGCCG TTTTGCTGCATCAAG TERM 2563 3111782 - 3111763 - T 100 -13.6 -5.33405 | opp_overlap 3111763 GCCACCAAACAAAAA CGGCGAAC CGAG GTTCGCCG TTTTGCTGCATCAAG rpsJ 3112130 - 3111822 - | 30S ribosomal subunit protein S10 tufB1 3113398 - 3112208 - | protein chain elongation factor EF-Tu TERM 2564 3113197 - 3113228 + g 72 -3.6 -4.63486 | overlap 3113186 3113198 3113201 CCGTCTCGTACTCGA CGTGCGCGGTGTTG ATGG TAATGCCGCGTGCC TTTTCTTCCGGCGCT fusA1 3115590 - 3113482 - | protein chain elongation factor EF-G, GTP-binding TERM 2565 3113817 - 3113827 + g 72 -4.6 -4.42238 | overlap 3113777 CCATCGAGCCGGCCA TGCG GAA CGCG TTTTCGTTCGAGTCC TERM 2566 3115682 - 3115651 - R 100 -16.6 -4.1891 | CGCCCCTAACACAAA CGGGCGAGATGTGT AAAA ACACAGCCCGCCCG GCAACCAACAATGTT rpsG 3116178 - 3115708 - | 30S ribosomal subunit protein S7, initiates assembly TERM 2567 3116324 - 3116306 - R 72 -4.4 -4.57073 | CACGGTTGCCAAAAA GGCGCTCC GTT GTACCGCC GCCTGGTGACAGCAC rpsL 3116780 - 3116403 - | 30S ribosomal subunit protein S12 TERM 2568 3116846 - 3116810 - R 88 -8.6 -4.72272 | gap 1, overlap 3116811 TGGTTTTACGAAAAA CGCCCCTCGTGCC-GGC ATGC GCCAGGCGGGAGAGGCA ACTACGGGTTTTGGG recQ 3118973 - 3117126 - | ATP-dependent DNA helicase TERM 2569 3117988 - 3118000 + g 71 -10.5 -3.80573 | overlap 3117985 GGCAGCCCGTCGCGG CCGGC GCG GCCGG TTTCCTGGTAATAGC TERM 2570 3119100 - 3119120 + r 95 -18.3 -3.53761 | opp_overlap 3119100 TGCAGACGAAAAAAA GCCCGGCTG GAT CAGCCGGGC TTTCGGGCCGCCTTG TERM 2571 3119120 - 3119100 - R 100 -18.3 -5.58454 | opp_overlap 3119100 TGCAGACGAAAAAAA GCCCGGCTG GAT CAGCCGGGC TTTCGGGCCGCCTTG rpoC 3123403 - 3119159 - | RNA polymerase, beta prime subunit TERM 2572 3121103 - 3121116 + g 71 -9.5 -3.68351 | GCCTTCACGGAAGTT CGCCG TAAT CGGCG TTTCAATGATCGAGC TERM 2573 3123420 - 3123452 + r 74 -14.8 -2.54634 | overlap 3123419 GCAACTCCTTGTTTC GCCACCGTCCCGGA GTCTG TCCGGGTCGATGGC ATTCATCCTGTGGGA rpoB 3127624 - 3123518 - | RNA polymerase, beta subunit TERM 2574 3127571 - 3127598 + g 93 -13.6 -4.21812 | gap 1 CTGATGTACCGTCGC GCGC-TTCGCAAA GCT TTTGCGAATGCGC TTCTTTTCGGTGAAG TERM 2575 3127869 - 3127837 - R 73 -6.4 -4.27117 | gap 1, opp_overlap 3127850 3127853, overlap 3127833 3127831 GGTTCAGAAGACAAA CATCAGCAGCA-ACC ACTT AGTGTGCCACTGATG TTTGGCCTCTGCTGA TERM 2576 3128017 - 3127987 - R 100 -11 -4.6902 | opp_overlap 3127997 3128014 3128015 GCACAAGCGCAAAAA GGCTGGCGCCGGGA ATT TCCCTTTGCCAGCC CCGTTCGCGTGCCGC rplL 3128427 - 3128053 - | 50S ribosomal subunit protein L7/L12 TERM 2577 3128506 - 3128538 + r 79 -13.4 -3.47751 | gap 1, overlap 3128506 ATTGCCTTAGGCTTC GGCAGCAGCTTCCGC TTCC GCGGGAGCAGC-GCC TTCTGCCTTCTTGGC rplJ 3129024 - 3128497 - | 50S ribosomal subunit protein L10 TERM 2578 3129353 - 3129375 + r 76 -13.4 -3.2496 | opp_overlap 3129355, overlap 3129348 TTGCGGTCCGGAGAC GACCCTCGCC ACT GGCCAGGGTC TTCAATTCTCGCTTG rplA 3130129 - 3129434 - | 50S ribosomal subunit protein L1, regulates synthesis of L1 and L11 rplK 3130561 - 3130130 - | 50S ribosomal subunit protein L11, N-terminal believed to regulate RelA nusG 3131305 - 3130724 - | transcription termination factor secE 3131696 - 3131316 - | preprotein translocase membrane subunit TERM 2579 3131713 - 3131749 + r 74 -12.3 -3.51232 | opp_overlap 3131707 3131716, overlap 3131709 3131716 TTTCGCAAACGAGAC TAAGCCGCGTCACGA TTGCTCC TCGCGACGCGGCTGA TTGATTTGGCAGGGG TERM 2580 3131746 - 3131716 - R 88 -16.2 -3.35344 | opp_overlap 3131713 3131709 3131716, overlap 3131707 CGCAAACGAGACTAA GCCGCGTCACGA TTGCTCC TCGCGACGCGGC TGATTGATTTGGCAG TERM 2581 3131716 - 3131746 + r 74 -14 -2.89569 | opp_overlap 3131707 3131716, overlap 3131713 3131709 CGCAAACGAGACTAA GCCGCGTCACGA TTGCTCC TCGCGACGCGGC TGATTGATTTGGCAG tufB2 3133105 - 3131915 - | protein chain elongation factor EF-Tu (duplicate of tufA) TERM 2582 3132904 - 3132935 + g 78 -5.8 -4.63486 | overlap 3132905 3132908 CCGTCTCGTATTCGA CGTGCGCGGTGTTG ATGG TAATACCGCGTGCC TTTTCTTCCGGCGCT TERM 2583 3133641 - 3133686 + r 72 -13.9 -2.7186 | overlap 3133664 TCTCACCCTATAGGG GCTTTGCCGGACGGCTCCTGG CGCG TCAGGAGCGGCCTGGCGGGGC TGCTTGAGGCGGTTT TERM 2584 3133759 - 3133720 - R 100 -16.7 -4.07687 | opp_overlap 3133727, overlap 3133727 ACGGGCGGCGGAAAA GCAAAAACCCCTCG-CAGC ACAC GCTGTCGAGGGGTTTT-GC ACAATAAGAGCCTGG TERM 2585 3133727 - 3133753 + r 93 -14.5 -4.09685 | gap 1, opp_overlap 3133720 3133727 GCGGAAAAGCAAAAA CCCCTCG-CAGC ACAC GCTGTCGAGGGG TTTTGCACAATAAGA TERM 2586 3133753 - 3133727 - R 100 -14.5 -5.0925 | gap 1, opp_overlap 3133727, overlap 3133720 GCGGAAAAGCAAAAA CCCCTCG-CAGC ACAC GCTGTCGAGGGG TTTTGCACAATAAGA TERM 2587 3136382 - 3136393 + r 72 -7.2 -4.2354 | AGGATCTATTTCACT CCCC TCCC GGGG TTCTTTTCGCCTTTC TERM 2588 3137125 - 3137101 - R 73 -11.5 -3.66178 | opp_overlap 3137101, overlap 3137106 CTTGGCAATGCCAAA GGAAAGCACTC CGT AAGCGCTTTCC TTTGACAACCAATCC RALTA_A2968 3139445 - 3139206 - | hypothetical protein RALTA_A2969 3139520 - 3139906 + | hypothetical protein spmAB 3139973 - 3141217 + | Bifunctional spore maturation protein, fused SpmA/SpmB precursor TERM 2589 3141356 - 3141376 + F 100 -12.6 -6.09133 | opp_overlap 3141360 CTCGGTGGATTCCAA CCCACGCA CAACC TGCGTGGG TTTTTTTTTCGCCTG RALTA_A2971 3141605 - 3141883 + | conserved hypothetical protein; putative exported protein uspA 3142372 - 3141902 - | Universal stress protein, UspA family TERM 2590 3142421 - 3142397 - H 88 -8.5 -4.72272 | opp_overlap 3142397 3142401, overlap 3142402 TCCGTCGATGAAAAA GAGATGCGGCA CCG TGCCGCCTGTC TTGGATAGTACACAT paaG2 3142575 - 3143594 + | subunit of multicomponent oxygenase, phenylacetic acid degradation with ferritin-like domain paaH2 3143621 - 3143908 + | subunit of multicomponent oxygenase, phenylacetic acid degradation TERM 2591 3144656 - 3144668 + G 75 -10.5 -4.03234 | CACGCTGAGCCTGCC GCCGG CCA CCGGC TTTGTCTCGACCGGC paaI2 3143919 - 3144770 + | subunit of multicomponent oxygenase, phenylacetic acid degradation TERM 2592 3144889 - 3144840 - g 74 -13.3 -3.29144 | gap 1, overlap 3144843 CCATGCCGTGCACAA CGACG-GCGCCACCAGCGGGCGCG TCG CGCGCGCGTGGGCGGCGCTCGAGG CGGTGCCGGACCCGG TERM 2593 3144886 - 3144843 - g 80 -18 -2.82623 | gap 1, overlap 3144840 TGCCGTGCACAACGA CG-GCGCCACCAGCGGGCGCG TCG CGCGCGCGTGGGCGGCGCTCG AGGCGGTGCCGGACC paaJ2 3144832 - 3145371 + | subunit of multicomponent oxygenase, phenylacetic acid degradation paaK2 3145396 - 3146499 + | subunit of multicomponent oxygenase, phenylacetic acid degradation; with NADP-linked, 2Fe-2S ferredoxin-like and riboflavin synthase-like domains RALTA_A2978 3146696 - 3147493 + | hypothetical protein RALTA_A2979 3147504 - 3148121 + | putative transcriptional regulator, TetR family kefC 3149963 - 3148149 - | Glutathione-regulated potassium-efflux system antiporter kefF 3150493 - 3149960 - | Glutathione-regulated potassium-efflux system ancillary protein, putative quinone oxidoreductase flavoprotein TERM 2594 3150809 - 3150797 - H 76 -5.5 -4.57341 | opp_overlap 3150797 AAGTGCCTGGAAAAA CACCG CCG CAGTG CTATTTTTATCTGAC RALTA_A2982 3150844 - 3151542 + | putative (Acyl-CoA) N-acetyltransferase, GCN5-related TERM 2595 3151575 - 3151607 + T 87 -19.3 -2.71712 | opp_overlap 3151580, overlap 3151580 CCGCACGGCCCAGAC AAAAACGGCGCATCG CAA CGATGCGCCGTTTTG CTTTGCGGGCCCGCC TERM 2596 3151602 - 3151580 - T 100 -19.2 -4.96848 | opp_overlap 3151575 3151580 CGGCCCAGACAAAAA CGGCGCATCG CAA CGATGCGCCG TTTTGCTTTGCGGGC TERM 2597 3151580 - 3151602 + T 100 -19.2 -4.54727 | opp_overlap 3151580, overlap 3151575 CGGCCCAGACAAAAA CGGCGCATCG CAA CGATGCGCCG TTTTGCTTTGCGGGC RALTA_A2983 3152120 - 3151626 - | putative transcriptional regulator, AsnC/Lrp family TERM 2598 3152460 - 3152484 + r 80 -15 -3.21912 | gap 1, opp_overlap 3152460 GAACGGACAAAAAAA GCGCGCG-GCC CTCA GGCTCGCGCGC TTGGTGGATTCACCG TERM 2599 3152484 - 3152460 - R 100 -15 -5.66684 | gap 1, opp_overlap 3152460 GAACGGACAAAAAAA GCGCGCG-GCC CTCA GGCTCGCGCGC TTGGTGGATTCACCG RALTA_A2984 3153140 - 3152535 - | conserved hypothetical protein; putative CALCIUM BINDING SIGNAL PEPTIDE PROTEIN, Calcium-binding EF-hand motifs TERM 2600 3153086 - 3153064 - G 70 -14.8 -2.71712 | overlap 3153063 CTGGCCTGGGCAAAG GCGCCGCCGG CGA CCAGCAGCGC GGCCGAGGCGGCCAG RALTA_A2985 3154062 - 3153295 - | putative General Secretory Pathway protein C, type II secretion system hmp 3155409 - 3154189 - | FLAVOHEMOPROTEIN, Nitric oxide dioxygenase TERM 2601 3155431 - 3155449 + r 76 -6 -4.56597 | opp_overlap 3155444 TCACTCCGTTTTATT CATGCAGA AAA TATGCATG TTTTTGGACAACAAA TERM 2602 3155481 - 3155468 - R 100 -9.5 -5.55769 | opp_overlap 3155474, overlap 3155444 3155470 TTGGACAACAAAAAA CCGGC ATTC GCCGG CCACGCGCGGATTCC nsrR 3155955 - 3155503 - | putative HTH transcriptional regulator; UPF0074 TERM 2603 3155993 - 3155979 - H 79 -8.6 -4.36089 | opp_overlap 3155978 TATGTTAAAAAAAGA TGCATC TAG GATGCA AGTTATTTCTGGCGC gspG 3156199 - 3156660 + | General Secretory Pathway protein G, type II secretion system gspH 3156694 - 3157194 + | GENERAL SECRETORY PATHWAY H TRANSMEMBRANE PROTEIN, type II secretion system TERM 2604 3157421 - 3157457 + G 74 -15.2 -3.02144 | gap 2, overlap 3157423 GCCCGAGCCCGGCGT CAGCGGCTATGCCTGCCC GCA GGGC-GGCAC-GCCGCTG TATTGCGAACAATCC gspI 3157191 - 3157601 + | GENERAL SECRETORY PATHWAY I TRANSMEMBRANE PROTEIN, type II secretion system gspJ 3157579 - 3158286 + | GENERAL SECRETORY PATHWAY J PROTEIN, putative TRANSMEMBRANE; type II secretion system gspK 3158319 - 3159332 + | GENERAL SECRETORY PATHWAY K TRANSMEMBRANE PROTEIN; type II secretion system TERM 2605 3160162 - 3160119 - g 81 -12.2 -3.95324 | gap 1, overlap 3160116 CAGGCTGAAGAACAA GCCGGCGCCGAGCCGTCGCTG ACG CCGCC-CGGCGCGGAACCGGC GGCGGAAACGGCGGC TERM 2606 3160212 - 3160171 - g 82 -15.7 -3.53343 | overlap 3160172 AACCGGCGGCGGAAA CGGCGGCGGTGCCGGCCAC GCTG GTGGTCGAGGCCGCCGCCA GTGCCCTGGCCCAGG TERM 2607 3160211 - 3160172 - g 78 -17 -2.71791 | overlap 3160171 ACCGGCGGCGGAAAC GGCGGCGGTGCCGGCCAC GCTG GTGGTCGAGGCCGCCGCC AGTGCCCTGGCCCAG gspL 3159603 - 3161057 + | GENERAL SECRETORY PATHWAY L TRANSMEMBRANE PROTEIN, type II secretion pathway gspM 3161065 - 3161679 + | GENERAL SECRETORY PATHWAY M PROTEIN, type II secretion pathway; putative precursor gspN 3161679 - 3162488 + | GENERAL SECRETORY PATHWAY N TRANSMEMBRANE PROTEIN; type II secretion system gspD 3162517 - 3165012 + | General Secretory Pathway protein D, type II secretion system gspE 3165021 - 3166583 + | General Secretory Pathway E protein, ATPase component TERM 2608 3167013 - 3167063 + G 80 -17.7 -2.89564 | CGCGCGCTGGTCTCG GCCGGCGAG-CACTCCGGCCACC TGGGCGT GGTG-CTGGAGCGGCTCGCCGGC TATATCGAATCGCGC TERM 2609 3167576 - 3167528 - g 74 -15.1 -3.06261 | overlap 3167536 CGCCAACGTTGAAGA CGCCAACACCCGCGTGCGCGAAG GCG CCTCGCTGGCGCGCGCGCTGGCG GCGCAGAACCAGTTC gspF 3166599 - 3167816 + | General Secretory Pathway protein F, type II secretion system RALTA_A2999 3169193 - 3167913 - | hypothetical protein TERM 2610 3168697 - 3168728 + g 86 -19.4 -3.12668 | gap 1 CTGCGCTTGCGCGTG GGCGCGG-CGGCGCC ATC GGCCCCGTCCGCGCC TTCGGTGTCGACCTC TERM 2611 3170882 - 3170868 - g 81 -3.5 -4.88918 | overlap 3170872 CGAGGCGAAAGAAAA GGCAT TGGCC ACGCC GCGCGTGGTCGGACA TERM 2612 3171488 - 3171465 - g 75 -8.8 -4.18018 | gap 1, opp_overlap 3171479 3171480, overlap 3171449 CTGCGCCACGGAAAA GCGCCGCCGCC GCA AGCG-CGGCAC GATGGAAGACCCGCC TERM 2613 3171479 - 3171513 + G 73 -10.5 -3.86897 | opp_overlap 3171449 3171465, overlap 3171480 3171504 3171505 AGCGCCGCCGCCGCA AGCGCGGCACGATGG AAGAC CCGCCGCGCCGCGCC TTTATCAACGATGCG RALTA_A3000 3169534 - 3173139 + | putative Indolepyruvate ferredoxin oxidoreductase; similar to iorA TERM 2614 3173256 - 3173272 + T 81 -13.7 -3.53811 | ACCCAGTGGCTTTCT GTCCCCC GCA GGGGGAC TTTAAAGACGCTGGA RALTA_A3001 3174003 - 3173392 - | hypothetical protein TERM 2615 3173500 - 3173482 - G 75 -5.3 -4.57073 | gap 1 CATCGGCTCGAAAAA CGACA-GC GGCA GCGTGTCG TAGTCGGTCATGAAG RALTA_A3002 3174148 - 3174498 + | putative Glutathione-dependent formaldehyde-activating enzyme RALTA_A3003 3174503 - 3174922 + | putative Glyoxalase/bleomycin resistance protein/dioxygenases superfamily TERM 2616 3174926 - 3174963 + F 71 -8.3 -3.91897 | gap 1, opp_overlap 3174923, overlap 3174927 ACCGCACAGTAACGC GCGTGGCG-TCCGGCGCG GCG CGCGCAGGATCGCTACAA TTTCTGACTGGCCCC RALTA_A3004 3175022 - 3176317 + | putative TRANSPORTER, Major Facilitator Superfamily RALTA_A3005 3176314 - 3177513 + | putative transporter, Major Facilitator Superfamily RALTA_A3006 3178466 - 3177582 - | putative homolog of eukaryotic 4,5-DOPA dioxygenase extradiol, Extradiol ring-cleavage dioxygenase, class III enzyme, subunit B TERM 2617 3178375 - 3178347 - G 70 -13.1 -3.32769 | overlap 3178340 3178349 CGCCGAAATCACCAA GACCGCGCGCG GGCGCTG CGCGCGCAGCC GGGCGCCGAGCGCCT TERM 2618 3178399 - 3178349 - G 80 -16.7 -3.22924 | gap 1, overlap 3178347 3178340 CCGAAATCACCAAGA CCGCGCGCG-GGCGCTGCGCGCGC AGCC GGGCGCCGAGCGCCTCGAACGCGG CGCCGGTGGGGCCGG RALTA_A3007 3178739 - 3179071 + | conserved hypothetical protein, putative transmembrane protein TERM 2619 3179331 - 3179354 + G 76 -2.2 -4.72272 | overlap 3179332 ACCTCGTTCCTGCTC ACCGTCGCCA CCTT TGGCGTGGGC TTTTTCATGCGCCCG proP 3179121 - 3180461 + | proline/glycine betaine transporter, Major facilitator superfamily TERM 2620 3180508 - 3180491 - T 86 -12.7 -4.07618 | opp_overlap 3180491 CGTGCAAGAAGCAAA GCCAGCC GCGA GGCTGGC TTTTTTGTTGCCCCC TERM 2621 3180491 - 3180508 + T 100 -12.7 -5.4505 | opp_overlap 3180491 CGTGCAAGAAGCAAA GCCAGCC GCGA GGCTGGC TTTTTTGTTGCCCCC RALTA_A3009 3180885 - 3180535 - | hypothetical protein tag 3180997 - 3181623 + | 3-methyl-adenine DNA glycosylase I, constitutive RALTA_A3011 3182930 - 3181986 - | Cation efflux protein RALTA_A3012 3183149 - 3183400 + | hypothetical protein RALTA_A3013 3184131 - 3183409 - | putative Hydantoin racemase TERM 2622 3184022 - 3183987 - G 71 -11.8 -3.63515 | gap 1, overlap 3183990 CTCCATCGTCAACAA TCATCGGCGCGCCGCGC GCA GC-CGTCGCGCCGACCA CGGCCGGCGGGGCCG TERM 2623 3184019 - 3183990 - G 72 -15.7 -2.93549 | gap 1, overlap 3183987 CATCGTCAACAATCA TCGGCGCGCCGCGC GCA GC-CGTCGCGCCGA CCACGGCCGGCGGGG TERM 2624 3184182 - 3184219 + H 84 -14.1 -3.7791 | gap 1 AGTCGGCTGAGTACC TGGGTGCGG-CGCCTGCG GTT CGCGGGCGTCCGCAACGA TTTCCTCGGTGCTTG TERM 2625 3185081 - 3185052 - H 78 -7.1 -4.59853 | GCAAGCCGTCAAAAA CAACCCAGCCGGT AAAA ACCACCCAGGTTG CAGACGAGATTTTCG TERM 2626 3185182 - 3185162 - H 74 -4.6 -4.57073 | opp_overlap 3185174 3185174 TATTCCGGCGAAAAA GCCATGGC TTATC GCTACGGC GCGAGTAATTCCGCC TERM 2627 3185482 - 3185458 - g 75 -9.9 -4.10161 | opp_overlap 3185459 CACCATTGCCGAAAA GCCGCAGACCC CGT GGTTCTGGGGC CATACGACCACCAAT RALTA_A3014 3185165 - 3186883 + | hypothetical protein TERM 2628 3186952 - 3186977 + F 100 -21.9 -4.27316 | ATAGTGCTTGTTCGA GGCCCGCACGG TTCG CCGTGCGGGCC TTTTCCATTGGGCAG TERM 2629 3187519 - 3187550 + G 70 -12.2 -3.34962 | gap 1, opp_overlap 3187484 GGCTCAACGCCCACG CGCCGGC-GCGGCCG CAT CGGGTGCTGCCGGTG TTCTCCAATCTGGGG RALTA_A3015 3187086 - 3188117 + | hypothetical protein TERM 2630 3188174 - 3188150 - T 100 -10 -5.4505 | gap 1, opp_overlap 3188150 3188148 3188169 GCCGGCAACAAAAAA CCCCGGCAGCC TGGC GACT-CCGGGG TATTCGGTATGTATT RALTA_A3016 3190081 - 3188360 - | putative periplasmic 5'-nucleotidase, putative soxB homolog RALTA_A3017 3190618 - 3190139 - | putative disulfite reductase/thioredoxin, putative soxW homolog RALTA_A3018 3191301 - 3190639 - | cytochrome of the thiosulfate-oxidizing multi-enzyme system, putative soxX homolog RALTA_A3019 3192145 - 3191321 - | cytochrome of the thiosulfate-oxidizing multi-enzyme system, putative soxA homolog TERM 2631 3192160 - 3192186 + r 70 -7.9 -3.98649 | gap 1, overlap 3192161 TGGGGCTTCCTCCTC GCGGCCGCGCCT TGCG GGGCG-GGCCGA TTCTTCTGTCTTGTC RALTA_A3020 3192683 - 3192228 - | conserved hypothetical protein; putative exported protein RALTA_A3021 3193092 - 3192781 - | thiosulphate binding protein, putative soxZ homolog RALTA_A3022 3193604 - 3193149 - | thiosulfate binding protein, putative soxY homolog TERM 2632 3193377 - 3193435 + g 75 -5.9 -4.42386 | gap 2, overlap 3193377 3193380 GGTGCTGGTCACGGC -CACCGGCACCA-CGGCGCCGTTCTCGGC GAT GTCGGGAGCGGTGAAGGTGATGGCGGTGC TTTTCTCGGTGCCGC TERM 2633 3193664 - 3193686 + r 72 -14.1 -2.82623 | overlap 3193661 TCAGGGGTGTTGCAT GCGGCCGGT ACATG GCCGGCCGC TGGTTGTCCCAGGCC RALTA_A3023 3194087 - 3193761 - | sulfite oxidation cytochrome c subunit 551/552 TERM 2634 3194200 - 3194168 - R 79 -15.6 -2.87132 | gap 1, opp_overlap 3194164 3194163 3194162 GCCTGGCGGCACACA CTGGCCGCCGC-CTG GGGG CACTGCGGCGGCCAG TCCGCTATTTTGCCT RALTA_A3024 3195242 - 3194205 - | sulfite oxidase cytochrome subunit c551/c552 TERM 2635 3194427 - 3194485 + g 72 -15.1 -2.83403 | gap 2, overlap 3194459 GGCCACGCACTGGTA CTGGCTGGCCAGGCGCGCGCCCGGCGCGG GCG CCGCCGCGGCCACG-GCTTGGCC-GCCCG GTTTGGTCGCCGCAG RALTA_A3025 3196584 - 3195226 - | sulfite dehydrogenase, putative soxC/D homolog TERM 2636 3196254 - 3196288 + g 83 -5.4 -4.91109 | CCGAGGCCGCCGACA CCCGGGTCAGCCCGGG CGA CTCGCGCCGGACCAGG TTTTTCTCATGGACC TERM 2637 3196596 - 3196639 + r 74 -13.1 -3.28712 | gap 2, overlap 3196598 GCAATGCGGTCTCCT CCGGCGCGCTCGCCACGGTCC CCAG GGACCG-GTCG-GCGTGCCTG TTGTACAGGGCGCCG TERM 2638 3196598 - 3196637 + r 80 -14.3 -3.21276 | gap 2, overlap 3196596 AATGCGGTCTCCTCC GGCGCGCTCGCCACGGTCC CCAG GGACCG-GTCG-GCGTGCC TGTTGTACAGGGCGC TERM 2639 3196645 - 3196674 + r 76 -11.4 -3.72576 | gap 1 GGCGTGCCTGTTGTA CAG-GGCGCCGCA ACGGG TGCGGCGCCGCCG TTTGCTGCCGGAAGA RALTA_A3026 3197086 - 3196703 - | transcriptional Regulator, ArsR family, putative homolog of soxR TERM 2640 3197192 - 3197156 - R 78 -15.1 -2.81872 | gap 1, overlap 3197151 TGCAGCACAACATGA GGTGCCGCGCGCGCCG GCTCAG CGGCGCGC-CAGCGCC CTGCCCGCCCACAGG eamA 3198064 - 3197174 - | similar to E.coli eamA, predicted transporter; DUF6; putative permease TERM 2641 3197806 - 3197774 - G 72 -3.9 -4.59773 | CGCCAGCGTGAAAAA GGCCTGCGACTGCAG CAC CAGCGATGCCAGGCC GGCCGGCATGCCGAC soxF 3199471 - 3198206 - | SULFIDE DEHYDROGENASE FLAVOCYTOCHROME C OXIDOREDUCTASE TERM 2642 3198948 - 3198987 + g 82 -14.8 -3.53091 | ATGGCATAGGTGCCG CCGTCGGGCATCGCCTCC AGCT GGCGGCGCAGCGCGACGG TTTCGGGCCCGGCCT RALTA_A3029 3199786 - 3199484 - | Cytochrome subunit of sulfide dehydrogenase, Flavocytochrome c cytochrome subunit, putative soxE homolog TERM 2643 3199979 - 3199957 - R 100 -13.4 -4.93365 | CCGCAGAACGAAAAA CGGCGCCC GCATAAG GGGCGCCG TGCTGACCTGCCAGG RALTA_A3030 3200891 - 3200013 - | conserved hypothetical protein; putative periplasmic or secreted lipoprotein, phospholipid_binding BON domains; putative precursor diaA 3201534 - 3200947 - | Phosphoheptose isomerase, DnaA initiator-associating factor for replication initiation RALTA_A3032 3201991 - 3201596 - | conserved hypothetical protein, UPF0102 RALTA_A3033 3202007 - 3202912 + | putative Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase RALTA_A3034 3203749 - 3203003 - | putative rare lipoprotein A (rlpA) TERM 2644 3203566 - 3203594 + g 82 -3.7 -5.00616 | overlap 3203553 3203543 TGTCGGGCGTGCGCG CGGCGCGCTCG GTCTTGG CGGGCTTGCTG TTTTTTGCCGCGCGC TERM 2645 3204398 - 3204433 + G 74 -11.9 -3.80733 | gap 1, overlap 3204400 GAAACCCTGGAGGTG TACCAC-TGCCCCGGC CACAC GCCGGGCCACGTGGTG TTCTTCTCGCGTCCC TERM 2646 3204400 - 3204431 + G 73 -12.3 -3.48824 | gap 1, overlap 3204398 AACCCTGGAGGTGTA CCAC-TGCCCCGGC CACAC GCCGGGCCACGTGG TGTTCTTCTCGCGTC RALTA_A3035 3204020 - 3204670 + | putative enzyme with metallo-hydrolase/oxidoreductase domain TERM 2647 3204964 - 3205015 + G 71 -10.9 -3.61922 | gap 2 GCTACGTCGAATGGG TCGAGGCCCTGCCGGGCAAGCCGGT CTTC GTCGCCTTCCCCG-C-GGGCTTCGA TTTCACCTGGATGTT RALTA_A3036 3204675 - 3205331 + | hypothetical protein RALTA_A3037 3205537 - 3205764 + | hypothetical protein TERM 2648 3205801 - 3205827 + T 100 -20.9 -3.65812 | TGCCTCGCAGACCGG CCGGCCCCCAC TCACC GTGGGGGCCGG TTCTATTGAGGCGAC RALTA_A3038 3206211 - 3205852 - | putative arsenate reductase with thioredoxin-like domain RALTA_A3039 3206385 - 3206978 + | Phosphinothricin N-acetyltransferase TERM 2649 3207225 - 3207241 + G 72 -3.5 -4.57569 | opp_overlap 3207222, overlap 3207227 GCAGTGCCAGAAGTC GCGCGAC GAC GACGCCC TTTTTCAGCAGATGG RALTA_A3040 3207076 - 3207360 + | putative antitoxin of a toxin/antitoxin system RALTA_A3041 3207357 - 3207629 + | putative toxin of a toxin/antitoxin system, parE-like TERM 2650 3207714 - 3207675 - T 100 -24.6 -3.05343 | opp_overlap 3207685, overlap 3207678 3207685 GCCATAGCCGCAACA CAATGCAAAACGCCACGG ATAC CCGTGGCGTTTTGCATTA GCCAGTCGCCTATTG TERM 2651 3207711 - 3207678 - T 100 -24.1 -3.67052 | opp_overlap 3207685, overlap 3207675 3207685 ATAGCCGCAACACAA TGCAAAACGCCACGG ATAC CCGTGGCGTTTTGCA TTAGCCAGTCGCCTA TERM 2652 3207685 - 3207704 + T 100 -15 -4.27316 | opp_overlap 3207685 3207678 3207675 CAACACAATGCAAAA CGCCACGG ATAC CCGTGGCG TTTTGCATTAGCCAG TERM 2653 3207704 - 3207685 - T 100 -15 -4.35874 | opp_overlap 3207685, overlap 3207678 3207675 CAACACAATGCAAAA CGCCACGG ATAC CCGTGGCG TTTTGCATTAGCCAG RALTA_A3042 3209021 - 3207753 - | putative peptidase, putative Acetylornithine deacetylase or Succinyl-diaminopimelate desuccinylase RALTA_A3043 3210335 - 3209079 - | N-carbamoyl-L-amino acid hydrolase (L-carbamoylase) TERM 2654 3210717 - 3210683 - H 81 -13.5 -3.64822 | gap 1, overlap 3210684 ATTCCTGGATCGAAA TGGGCCAG-CCAGCGC ACTT GCGCCGGACCGGCCCC GCACGGAGACAACCA TERM 2655 3210716 - 3210684 - H 84 -17 -2.78679 | gap 1, overlap 3210683 TTCCTGGATCGAAAT GGGCCAG-CCAGCGC ACTT GCGCCGGACCGGCCC CGCACGGAGACAACC dctA3 3210732 - 3212129 + | citrate and C4-dicarboxylic acids transport protein (DAACS family) TERM 2656 3212214 - 3212243 + G 74 -12.9 -3.60627 | gap 1, opp_overlap 3212205 3212217 ACATGACCGCCGAAG CGATCGCCGACGAC ATC GTCG-CGGCCATCG TTTCGCATCGCCTGC TERM 2657 3212530 - 3212500 - g 84 -16.9 -3.40403 | gap 1 CGCCGCCGACTACAA GCGCATCGACCGCC ACCT GGCGGCCGA-GCGC AAGTCGCTGGCGGGC RALTA_A3045 3212177 - 3212869 + | putative TRANSCRIPTION REGULATOR, GntR family TERM 2658 3213039 - 3213073 + F 100 -16.4 -5.24129 | overlap 3213043 ACCTCATCGTCGGCA GGCAGCCCGCACGCTG CAA CGGTGTGCGGGCTTTC TTTTTTCTGAGGACG TERM 2659 3213043 - 3213069 + F 100 -18 -5.13354 | overlap 3213039 CATCGTCGGCAGGCA GCCCGCACGCTG CAA CGGTGTGCGGGC TTTCTTTTTTCTGAG TERM 2660 3213131 - 3213152 + F 81 -7.2 -4.4267 | overlap 3213132 GCCCCGCGGCCTCGA ACCGGTGC CGTCCC GCACCGGA TTTTCCCTTTTCCGA RALTA_A3046 3213465 - 3214268 + | putative 2,4-dienoyl-CoA reductase (NADPH) TERM 2661 3214444 - 3214497 + G 74 -14.3 -3.28712 | gap 1 GAGGCCGTGGACCGC GCCGCGGCCGACGCCGAGGTGC-GCG CCG TGCTGCTGACCGGTGCCGGCCGCGGC TTCTGCGCCGGCGCC RALTA_A3047 3214321 - 3215100 + | Enoyl-CoA hydratase TERM 2662 3215258 - 3215218 - g 71 -10.4 -3.75115 | overlap 3215214 CCCCGACAAAATGAA CGCGCTCGACCAGGCCAT GTTCG ATGCCCTGATCGAGACCG GCGAACGGCTCGCGC TERM 2663 3215845 - 3215791 - g 79 -2 -4.82901 | overlap 3215792 3215793 GGTCGCGCAGAAAAA CCCGCACGCGATCCG-CGCCGCCA AGCGGCTGA TGGCGGTGGCCGAACGCG-GCGAC CACGCCGCCATCCTG RALTA_A3048 3215135 - 3215968 + | putative Enoyl-CoA hydratase/isomerase RALTA_A3049 3216350 - 3215979 - | hypothetical protein TERM 2664 3216124 - 3216162 + g 75 -10.3 -4.07885 | opp_overlap 3216120, overlap 3216124 CGCTCGACAAAGCCG C-CGCTGTAGCCGGCCTGC CCG GCAGCCTGGC-GCAGCGAG TTTTCCAGCGGCGTC RALTA_A3050 3217378 - 3216368 - | putative transcriptional regulator, LysR family TERM 2665 3217052 - 3217076 + g 71 -11.4 -3.66018 | gap 1 GGCAATCAGCATCTC GGCGC-GGTCG AGGT CGGCCAGCGCC TTCTTGCACTGCTCC TERM 2666 3217419 - 3217381 - R 72 -12.3 -3.28924 | gap 1, opp_overlap 3217410 GAGGCCGCCGCATAA GGGCAGCCGCCAGGCCCG GCCA CGGGCAT-GCGGCGGCAC CCGGTGCGCGGCTAC RALTA_A3051 3218129 - 3217431 - | hypothetical protein TERM 2667 3218060 - 3218025 - G 74 -13.8 -3.37071 | overlap 3218013 AAAGCCCAGCCACAA CGCGCGTCCGAGCCGG CTGT CCGGCCCGGGCGTGGG CGCCGGTGAGGCCGA gcl 3218412 - 3220196 + | glyoxylate carboligase hyi 3220325 - 3221107 + | hydroxypyruvate isomerase glxR 3221176 - 3222096 + | tartronic semialdehyde reductase TERM 2668 3222142 - 3222097 - f 82 -14.7 -3.37612 | gap 1, opp_overlap 3222104 3222105 3222108, overlap 3222100 3222104 3222105 GCCAACGCCAAGTAA GCAGCAACCCCGTCGTCCCCGC CCT GCGGGGACGACTAGCTTTC-GC AGTCAGCCAGTACCC TERM 2669 3222140 - 3222100 - f 83 -16.1 -2.84841 | opp_overlap 3222104 3222105 3222108, overlap 3222097 3222104 3222105 AACGCCAAGTAAGCA GCAACCCCGTCGTCCCCGC CCT GCGGGGACGACTAGCTTTC GCAGTCAGCCAGTAC TERM 2670 3222136 - 3222104 - f 84 -15.5 -3.30554 | opp_overlap 3222104 3222105 3222108, overlap 3222100 3222097 3222105 CCAAGTAAGCAGCAA CCCCGTCGTCCCCGC CCT GCGGGGACGACTAGC TTTCGCAGTCAGCCA TERM 2671 3222104 - 3222136 + F 77 -13.3 -3.57144 | opp_overlap 3222104 3222100 3222097 3222105, overlap 3222105 3222108 CCAAGTAAGCAGCAA CCCCGTCGTCCCCGC CCT GCGGGGACGACTAGC TTTCGCAGTCAGCCA TERM 2672 3222135 - 3222105 - f 87 -19 -2.5785 | opp_overlap 3222104 3222105 3222108, overlap 3222104 3222100 3222097 CAAGTAAGCAGCAAC CCCGTCGTCCCCGC CCT GCGGGGACGACTAG CTTTCGCAGTCAGCC TERM 2673 3222105 - 3222135 + F 81 -16.8 -2.74144 | opp_overlap 3222105 3222104 3222100 3222097, overlap 3222104 3222108 CAAGTAAGCAGCAAC CCCGTCGTCCCCGC CCT GCGGGGACGACTAG CTTTCGCAGTCAGCC TERM 2674 3222108 - 3222132 + F 100 -21.5 -2.64803 | opp_overlap 3222105 3222104 3222100 3222097, overlap 3222105 3222104 GTAAGCAGCAACCCC GTCGTCCCCGC CCT GCGGGGACGAC TAGCTTTCGCAGTCA TERM 2675 3222684 - 3222663 - g 71 -11.5 -3.63569 | overlap 3222652 3222677 GCAAGCCGTGAACAA GGCGCTGCT CAAG AGCGGCGCC AGCATCGGCGAGATG ttuD2 3222178 - 3223500 + | HYDROXYPYRUVATE REDUCTASE OXIDOREDUCTASE PROTEIN; tartrate degradation ttuE2 3223608 - 3225071 + | PYRUVATE KINASE; tartrate degradation TERM 2676 3225116 - 3225139 + F 74 -13.2 -3.27525 | opp_overlap 3225120, overlap 3225120 CGACCACGCCATGAC GGAACCGGGT GCAA ACCCGGTTTC TTCGCTTTGCCGCAC TERM 2677 3225120 - 3225135 + F 85 -10.4 -4.29326 | opp_overlap 3225120, overlap 3225116 CACGCCATGACGGAA CCGGGT GCAA ACCCGG TTTCTTCGCTTTGCC TERM 2678 3225154 - 3225193 + F 100 -15.8 -5.78622 | gap 1 CTTCGCTTTGCCGCA CACCGCCCGCATTGCCC GTCTCCA GGGCGA-GTGGGCGGTG TTTTTTTTGGCGTGC RALTA_A3057 3225318 - 3226187 + | conserved hypothetical protein, neutral zinc metallopeptidases domain acrD 3226488 - 3229628 + | aminoglycoside/multidrug efflux pump (RND family) TERM 2679 3229646 - 3229634 - T 100 -9.1 -5.0916 | TGCGGAATAGAAAAA CGCCT GCC AGGCG AATAGAGAAGGAGGA TERM 2680 3229718 - 3229692 - T 81 -7.8 -4.52857 | overlap 3229693 3229694 AGGCGGGAGAGAAAA TTTGCGGCCACC CGC GGTGGCCGCGTC GGGTCATGAGCAGAC TERM 2681 3229716 - 3229694 - T 74 -14.8 -2.58418 | overlap 3229693 3229692 GCGGGAGAGAAAATT TGCGGCCACC CGC GGTGGCCGCG TCGGGTCATGAGCAG RALTA_A3059 3230155 - 3229742 - | conserved hypothetical protein, putative exported protein rnk 3230834 - 3230415 - | regulator of nucleoside diphosphate kinase TERM 2682 3231015 - 3230983 - R 79 -8.3 -4.36127 | gap 1, overlap 3230985 GGCAACAACGGAAAA GC-TGGCTCGGGCC CGGTTC GGCCCGGGCCCCGC TATGGGAGACGAATC RALTA_A3062 3231783 - 3231352 - | putative transcriptional regulator, MerR family RALTA_A3063 3231990 - 3232379 + | conserved hypothetical protein; putative exported protein htpX 3232504 - 3233382 + | membrane-associated Zn-dependent endopeptidase RALTA_A3065 3233796 - 3233392 - | putative Peptidyl-tRNA hydrolase RALTA_A3066 3234650 - 3233835 - | putative MltA-interacting MipA TERM 2683 3234793 - 3234811 + r 75 -13.8 -3.04144 | opp_overlap 3234788 AGGGAGCAGACCGCA GCGGCGCT CCA GGCGCCGC TGTTGGAAGTGCGCG RALTA_A3067 3235202 - 3234855 - | conserved hypothetical protein, COG3514 TERM 2684 3235159 - 3235183 + g 78 -8.5 -4.37711 | overlap 3235161 3235161 CGGCGGATCGCGGCG TCTTCCGCGTC GGT GACGCGGACAA TTTTACGTTTGGTCG RALTA_A3068 3235455 - 3235186 - | conserved hypothetical protein, DUF497 TERM 2685 3236629 - 3236588 - g 90 -14.3 -3.99678 | gap 1, overlap 3236589 AGGTCTACAAGGAAA TCTGCGCCGCCTGCCACGCC ACC GGCGCGGCGGGC-GCGCCCA AGCACGGCGCCGCCG TERM 2686 3236630 - 3236589 - g 78 -16.5 -2.99325 | gap 1, overlap 3236588 GGTCTACAAGGAAAT CTGCGC-CGCCTGCCACGCC ACC GGCGCGGCGGGCGCGCCCAA GCACGGCGCCGCCGG TERM 2687 3236733 - 3236691 - g 77 -14.6 -3.14564 | CGACGGCCTGATGAA GTCGGTGCTCGGCGGCAAGG GCG CGATGCCGCCGCGCGCCGGC AGCACGCCTGACGAC TERM 2688 3236926 - 3236969 + G 74 -15.8 -2.71011 | GCGGCTCCGGCTGCC GCTGCCGCCCCCGCCCCGGC CGCC GCTGCCGCGGCGCCGGCAGC TGCTTCGGCCGAAGT RALTA_A3069 3236317 - 3237216 + | putative membrane bound protein, weak cytochrome c domains TERM 2689 3237260 - 3237242 - T 100 -13.8 -6.09888 | opp_overlap 3237242 CCGCAACAAAAAAAA CCCGCGCA TCT CGCGCGGG TTTTTTTTCGTCCAG TERM 2690 3237242 - 3237260 + T 100 -13.1 -5.86061 | opp_overlap 3237242 CCGCAACAAAAAAAA CCCGCGC ATCTC GCGCGGG TTTTTTTTCGTCCAG hemN 3238755 - 3237298 - | coproporphyrinogen III oxidase, O2-independent, SAM and NAD(P)H dependent TERM 2691 3237594 - 3237549 - G 77 -17.7 -2.64155 | gap 1, overlap 3237546 3237545 CCTCGTTGAAATCGA TGCCATGGCGCGCCTCGATGGC GGG GAGATCGAG-CACGCCATGGCA CATCAGGTCGCCGAT RALTA_A3071 3239066 - 3240100 + | putative ABC-type branched-chain amino acid transport systems periplasmic component rep 3242221 - 3240125 - | DNA helicase and single-stranded DNA-dependent ATPase RALTA_A3073 3242491 - 3242718 + | putative lipoprotein TERM 2692 3243022 - 3243080 + F 100 -22 -4.0613 | overlap 3243022 3243023 ATCGAGGACAGAGGG -GTCATCCGCCGCAGCGGATTGCTGGCC ATATC GGCTGGCGAT-CGTTGCGGCGGATGACC CTTTTTTGTTTTCGC TERM 2693 3243022 - 3243079 + F 100 -28 -3.02051 | gap 1, overlap 3243022 3243023 ATCGAGGACAGAGGG GTCATCCGCCGCAGCGGATTGCTGGCC ATATC GGCTGGCGAT-CGTTGCGGCGGATGAC CCTTTTTTGTTTTCG TERM 2694 3243023 - 3243081 + F 100 -7.7 -5.79595 | gap 4, overlap 3243022 3243022 TCGAGGACAGAGGGG ---TCATCCGCCGCAGCGGATTGCTGGCC ATATC GGCTGGCGAT-CGTTGCGGCGGATGACCC TTTTTTGTTTTCGCC TERM 2695 3243390 - 3243429 + G 72 -4.8 -4.41348 | overlap 3243392 TCTATTCCTGCATGC TTGACGAGCACGGCGGCG TCAT CGACGACCTGATCGTCTA TTTCTTTGCGGAAGA TERM 2696 3243556 - 3243514 - g 74 -16.3 -2.70932 | CCGCGCCCGCAACGA GGCCAC-CGGCAGCGGCGTGA CCA TCACGCCGC-GCCGCGAGGAC GTTGCGCCCGCGGGC gcvT 3243122 - 3244249 + | glycine cleavage complex protein T, aminomethyltransferase, tetrahydrofolate-dependent gcvH 3244349 - 3244729 + | glycine cleavage complex protein H, carrier of aminomethyl moiety via covalently bound lipoyl cofactor TERM 2697 3244867 - 3244824 - f 70 -7.3 -4.04295 | gap 1, overlap 3244819 3244825 3244828 GGAACGACAAGCAAA TTGACAGCGCGCCGGCGGGC TGACC ACCTGCCGACGCGCC-CCAC GAGGTTCTTGCCAAT gcvP 3244881 - 3247811 + | glycine cleavage complex protein P, glycine decarboxylase, PLP-dependent TERM 2698 3248780 - 3248740 - g 100 -11.8 -4.78572 | gap 1, overlap 3248776 CGTCAATGAAGAAAA CGCCGCCGGCGGACG-CGT GGTC ACGGCGCCGACCAACGGCG CGGCCGGCATCATCC sdaA 3247904 - 3249280 + | L-serine deaminase I RALTA_A3078 3249336 - 3250073 + | putative hydroxyacylglutathione hydrolase TERM 2699 3250407 - 3250396 - g 73 -7.2 -4.21812 | TGTGATGGAAAAGAA CGCC GACG GGCG CATGGCGATGACGGT RALTA_A3079 3250103 - 3250576 + | Putative stress-induced protein, OsmC-like protein TERM 2700 3250647 - 3250629 - f 76 -10.2 -3.90112 | overlap 3250630 CCTGGCGCAACGAAA CCCGTGGC GCA GCCACGGC CGGCGCGGGCGCGCC TERM 2701 3250646 - 3250630 - f 74 -13.7 -2.93853 | overlap 3250629 CTGGCGCAACGAAAC CCGTGGC GCA GCCACGG CCGGCGCGGGCGCGC RALTA_A3080 3250632 - 3251453 + | conserved hypothetical protein; putative exported protein RALTA_A3081 3251598 - 3252089 + | conserved hypothetical protein; putative exported protein ybdK 3253265 - 3252150 - | ATP-dependent carboxylate-amine ligase RALTA_A3083 3254518 - 3253265 - | conserved hypothetical protein; putative membrane protein; putative Na+/H+ exchanger TERM 2702 3254580 - 3254615 + r 88 -16.4 -3.37344 | opp_overlap 3254589, overlap 3254589 TTTCAGCCATCTTCT CGTAAAAAACGCCATC TTCG GATGGCGTTTTTTACA TTCCTTACATCCGCG TERM 2703 3254606 - 3254589 - R 100 -11.3 -5.00616 | opp_overlap 3254580 3254589 TCTTCTCGTAAAAAA CGCCATC TTCG GATGGCG TTTTTTACATTCCTT TERM 2704 3254589 - 3254606 + r 100 -11.3 -5.1848 | opp_overlap 3254589, overlap 3254580 TCTTCTCGTAAAAAA CGCCATC TTCG GATGGCG TTTTTTACATTCCTT RALTA_A3084 3256632 - 3254659 - | hypothetical protein TERM 2705 3254881 - 3254911 + g 70 -12.5 -3.29511 | gap 1, opp_overlap 3254880 3254879 GGCGGCGACGAAATC CGCCAGCGCGGCGT CATG GCGGCGCGC-GGCG TTGTGCACCAGTCCA TERM 2706 3256759 - 3256730 - R 100 -15.1 -4.11216 | opp_overlap 3256736, overlap 3256736 CCGGCACCCGGAAAA GAAAAACGCCGCC CGCA GGCAGCGTTCTTC CCATGCGCCAGACGC TERM 2707 3256753 - 3256736 - R 100 -10.5 -5.45802 | opp_overlap 3256736, overlap 3256730 CCCGGAAAAGAAAAA CGCCGCC CGCA GGCAGCG TTCTTCCCATGCGCC RALTA_A3085 3257936 - 3256785 - | putative ABC-type branched-chain amino acid transport system, periplasmic component TERM 2708 3258008 - 3258034 + r 81 -7.8 -4.52589 | overlap 3258006 3258004 GGCAGTTGTATTGCG GCGCAGCCTGGC AGT GCCGCGCCGTGC TTTTCTCTGCGCGGC putA 3262090 - 3258107 - | multifunctional: transcriptional repressor of proline utilization; proline dehydrogenase; pyrroline-5-carboxylate dehydrogenase priA 3264522 - 3262285 - | primosomal protein N' (factor Y) , ATP-dependent DNA helicase hemE 3266221 - 3265124 - | uroporphyrinogen decarboxylase RALTA_A3089 3267218 - 3266268 - | putative hydrolase TERM 2709 3266804 - 3266772 - G 80 -16.2 -3.15544 | GGCCACGGCCAGGAA GCCCGGCGCCAGGC CCAGC GCCTGGCGCTGGCC GGCAAGCCAGAGGAC RALTA_A3090 3267694 - 3267266 - | conserved hypothetical protein, putative CoA-binding protein TERM 2710 3268268 - 3268295 + r 100 -10.5 -5.93809 | gap 1, overlap 3268269 AAGGGATTTTCCCGT CCGCGCGGAGCC TCCCC GGC-CCGCGCGC TTTTTTTTGTCCAGG TERM 2711 3268269 - 3268294 + r 93 -14 -4.15201 | gap 1, overlap 3268268 AGGGATTTTCCCGTC CGCGCGGAGCC TCCCC GGC-CCGCGCG CTTTTTTTTGTCCAG TERM 2712 3268362 - 3268345 - R 100 -12.7 -5.28176 | opp_overlap 3268345 CGCACTCACAAAAAA GGCAGCC TCGC GGCTGCC TTTTTTAATGTCGCA TERM 2713 3268345 - 3268362 + r 100 -12.7 -5.21709 | opp_overlap 3268345 CGCACTCACAAAAAA GGCAGCC TCGC GGCTGCC TTTTTTAATGTCGCA TERM 2714 3268405 - 3268387 - R 81 -3.8 -5.08824 | overlap 3268394 GTCGCATCGAAAAAA CAACAATG CGA CAGTGCTG CGCGATGCTTACTTC atpC 3268857 - 3268414 - | membrane-bound ATP synthase, F1 sector, epsilon-subunit atpD 3270333 - 3268930 - | F1 sector of membrane-bound ATP synthase, beta subunit atpG 3271242 - 3270367 - | membrane-bound ATP synthase, F1 sector, gamma-subunit TERM 2715 3271262 - 3271298 + r 78 -15.8 -2.80994 | gap 1, opp_overlap 3271265 TCCTCTCCATCCGAA CCATCGCCGCGCC-GGC GTGA GCCAGGCGCGGCGACGA TGTCGTGGAATTACG TERM 2716 3271295 - 3271265 - R 91 -20.5 -2.73364 | gap 1, opp_overlap 3271262 TCTCCATCCGAACCA TCGCCGCGCC-GGC GTGA GCCAGGCGCGGCGA CGATGTCGTGGAATT atpA 3272861 - 3271317 - | membrane-bound ATP synthase, F1 sector, alpha-subunit TERM 2717 3272882 - 3272916 + r 70 -9.9 -3.6682 | gap 1 TCCTAATTCTTCAAT CCGT-CGGACGGCCGC TCAG GCGGCGGTCAGCGCGG TTTGCATGGCTGCCA atpH 3273442 - 3272897 - | membrane-bound ATP synthase, F1 sector, delta-subunit atpF 3273915 - 3273445 - | membrane-bound ATP synthase, F0 sector, subunit b TERM 2718 3273987 - 3273960 - R 100 -12.7 -4.52803 | gap 1 GATAAATGCACAAAA GGCGGC-CAGGC TGGTG GCCCGCGCCGCC CGTCAGCATCATGCA atpE 3274281 - 3274015 - | membrane bound ATP synthase, F0 sector, subunit c atpB 3275219 - 3274353 - | membrane-bound ATP synthase, F0 sector, subunit a, important for FO assembly TERM 2719 3274506 - 3274479 - G 73 -9.8 -3.87373 | GACATGGCCGACAAA GCCCAGCGCCGA CAGG TCCGCGCTGAAC GTCCAGATGGAACCC RALTA_A3099 3275967 - 3275461 - | membrane-bound ATP synthase subunit I, F1-F0-type proton-ATPase TERM 2720 3276108 - 3276142 + r 70 -10 -3.63895 | opp_overlap 3276090 3276127 TTGCCATCACGATTG CATGATGGCTGCGCGA AAA TTGCGCGGCAATGATG TTTGACGTAATTGGA parB1 3277187 - 3276285 - | exonuclease involved in chromosome partitioning, PARB protein parA1 3277977 - 3277204 - | ATPase involved in chromosome partitioning, PARA protein gidB 3278785 - 3278057 - | glucose-inhibited division protein, contains S-adenosyl-L-methionine-dependent methyltransferase domain gidA 3280740 - 3278782 - | tRNA uridine 5-carboxymethylaminomethyl modification enzyme gidA (Glucose-inhibited division protein A) TERM 2721 3280127 - 3280109 - G 79 -4.5 -4.68593 | TCCATCACGGAAAAA TCGATGG TGCGC CCGTCGA TGCGCGGCGGCGTGC TERM 2722 3280905 - 3280927 + r 80 -16.3 -2.65354 | opp_overlap 3280881 3280905, overlap 3280902 3280901 TCACGTGAAACAAAA TGGCCGGGC GCAAG GCCCGGCCA TAGGTTTCACGTGGA TERM 2723 3280927 - 3280905 - R 100 -16.3 -4.88918 | opp_overlap 3280905 3280902 3280901, overlap 3280881 TCACGTGAAACAAAA TGGCCGGGC GCAAG GCCCGGCCA TAGGTTTCACGTGGA RALTA_A3104 3281824 - 3280952 - | putative N-formylglutamate amidohydrolase RALTA_A3105 3282823 - 3281828 - | conserved hypothetical protein, UPF0065 TERM 2724 3283304 - 3283328 + G 75 -9.9 -4.07568 | CGACCCTCGCCAGCG TCTGGCTGGTG CCG CGCCTGCCGGA TTTTCACCGCCGGCA RALTA_A3106 3282985 - 3283920 + | putative transcriptional Regulator, LysR family TERM 2725 3284130 - 3284155 + T 70 -10.3 -3.61517 | opp_overlap 3284133, overlap 3284133 CACACCACCAATAAC AAAGGGCCCGC TTGC GCGGGCCCTCA TTCTTCAGGCGAAAT TERM 2726 3284133 - 3284152 + T 83 -16.4 -2.93073 | opp_overlap 3284133, overlap 3284130 ACCACCAATAACAAA GGGCCCGC TTGC GCGGGCCC TCATTCTTCAGGCGA TERM 2727 3284152 - 3284133 - T 100 -16.4 -4.49316 | opp_overlap 3284133 3284130 ACCACCAATAACAAA GGGCCCGC TTGC GCGGGCCC TCATTCTTCAGGCGA RALTA_A3107 3284923 - 3284180 - | putative branched-chain amino acid transport system permease, ATP_binding component RALTA_A3108 3286791 - 3284944 - | putative branched-chain amino acid transport system permease, ATP_binding component TERM 2728 3286282 - 3286255 - G 78 -9.9 -4.22652 | CCAGATCAGGTAAAA CATCGAACGGC CGGACT GCAGTTCGATG CCGAAGAACGACAGC RALTA_A3109 3287847 - 3286795 - | putative branched-chain amino acid transport system permease, membrane component TERM 2729 3288046 - 3288023 - R 100 -18.2 -5.24531 | opp_overlap 3288020 3288023 ACGCGCCAGAAAAAA GGGCGCATGG TCAG CCATGCGCCC TGCTTCACTGCGGAA TERM 2730 3288023 - 3288046 + r 86 -18.2 -2.75064 | opp_overlap 3288023, overlap 3288020 ACGCGCCAGAAAAAA GGGCGCATGG TCAG CCATGCGCCC TGCTTCACTGCGGAA RALTA_A3110 3289254 - 3288106 - | putative branched amino acid transport system permease, periplasmic binding component TERM 2731 3289282 - 3289316 + r 100 -12.1 -5.08824 | gap 1, opp_overlap 3289284, overlap 3289283 3289284 GGTTCCTGAAACGGA AAGGCATCCGTCCGGC GTCC GCCGG-CGGATGCCCC TTTTTTGGATCGACC TERM 2732 3289283 - 3289315 + r 86 -15.6 -3.64812 | gap 1, opp_overlap 3289284, overlap 3289282 3289284 GTTCCTGAAACGGAA AGGCATCCGTCCGGC GTCC GCCGG-CGGATGCCC CTTTTTTGGATCGAC TERM 2733 3289284 - 3289314 + r 87 -19.1 -2.78405 | gap 1, opp_overlap 3289284, overlap 3289283 3289282 TTCCTGAAACGGAAA GGCATCCGTCCGGC GTCC GCCGG-CGGATGCC CCTTTTTTGGATCGA TERM 2734 3289314 - 3289284 - R 100 -19.1 -3.84451 | gap 1, opp_overlap 3289284 3289283 3289282 TTCCTGAAACGGAAA GGCATCCGTCCGGC GTCC GCCGG-CGGATGCC CCTTTTTTGGATCGA RALTA_A3111 3290306 - 3289545 - | conserved hypothetical protein, DUF81; putative membrane protein TERM 2735 3289640 - 3289621 - G 74 -10.7 -3.72695 | opp_overlap 3289617 3289629 ACCTTGCGCACGAAA GCGCTGC CATGGC GCAGCGC CAGCTTGCTTCCCAC TERM 2736 3289905 - 3289869 - G 82 -15.7 -3.48593 | overlap 3289856 3289870 CACGCCGTCATAGAA GCCCAGCACGGCGCCGC CGA GCAGCGCCGCGCCGCGT TCGCCCCAGCCCGTC TERM 2737 3289904 - 3289870 - G 81 -19.2 -2.68942 | overlap 3289856 3289869 ACGCCGTCATAGAAG CCCAGCACGGCGCCGC CGA GCAGCGCCGCGCCGCG TTCGCCCCAGCCCGT TERM 2738 3290286 - 3290274 - G 78 -10.5 -4.1552 | CAGGCCGGCAAGAAA GGCGG CGA CCGCC AGGAATGCGAATTCC RALTA_A3112 3290945 - 3290403 - | hypothetical protein TERM 2739 3290506 - 3290470 - G 79 -10.8 -4.05446 | GCGTGCAAGGAGAAA CCGGG-TGGCGCGCCGCC GTG GCCGGC-CGCCAGCCCCG GAGCCAGCAGCGCAT TERM 2740 3291070 - 3291100 + r 83 -7.5 -4.55697 | gap 1, opp_overlap 3291072, overlap 3291071 3291072 AAGCCCAAATGAAAA AAGCGTTGCCGAGG ATCA CC-CGGCAACGCCC TTTATTTATAACGCT TERM 2741 3291098 - 3291072 - R 100 -15.9 -5.37593 | opp_overlap 3291071 3291070 3291072 GCCCAAATGAAAAAA GCGTTGCCGAG GATCA CCCGGCAACGC CCTTTATTTATAACG TERM 2742 3291072 - 3291098 + r 74 -14.5 -2.59135 | gap 1, opp_overlap 3291072, overlap 3291071 3291070 GCCCAAATGAAAAAA GCGTTGCCGAGG ATCA CC-CGGCAACGC CCTTTATTTATAACG RALTA_A3113 3292283 - 3291264 - | putative Branched-chain amino acid transport system permease, membrane component RALTA_A3114 3293209 - 3292319 - | putative Branched-chain amino acid transport system permease, membrane component RALTA_A3115 3294646 - 3293438 - | putative branched-chain amino acid transport system permease, periplasmic component TERM 2743 3293709 - 3293747 + g 70 -8.7 -3.82084 | overlap 3293711 3293712 TTCAGGTAGGTGCTG GCCGCCGAGTAGTCCGC TGCCT GCAGGCTGCTCGGCATC TTCTTCATCTTGCCG RALTA_A3116 3295463 - 3294726 - | putative branched-chain amino acid transport system permease, ATP binding component RALTA_A3117 3296257 - 3295481 - | putative branched-chain amino acid transport system permease, ATP binding component TERM 2744 3296088 - 3296068 - G 75 -8.2 -4.17048 | TGCCGTTGAAAAGAA TGGTGCCG GTGGT CGGCTCCA GGAACTTGGTGAGCA TERM 2745 3296369 - 3296387 + r 81 -4.4 -5.03994 | overlap 3296370 3296371 TCAGGGTCGCCGTGG TTGCCGGC CAC GCCCGCGG TTTTTATCTGTGCGG TERM 2746 3296410 - 3296465 + r 91 -18.2 -3.22618 | gap 1, overlap 3296410 3296409 3296462 CTGTGCGGGGCGGCT C-CCGCGCGGGGTGCGACGGCGGCATG GCA TGTGCCGCCGAAGCACCCTGTGAGGCG TCTATTGTGTGCGCC TERM 2747 3296410 - 3296464 + r 86 -18.4 -2.53249 | overlap 3296409 3296410 3296462 CTGTGCGGGGCGGCT CCCGCGCGGGGTGCGACGGCGGCATG GCA TGTGCCGCCGAAGCACCCTGTGAGGC GTCTATTGTGTGCGC RALTA_A3118 3298300 - 3296609 - | choline oxidase (putative soluble) /choline dehydrogenase, a flavoprotein RALTA_A3119 3299853 - 3298327 - | Methylmalonate-semialdehyde dehydrogenase / Malonate-semialdehyde dehydrogenase RALTA_A3120 3300110 - 3300997 + | putative transcriptional regulator, LysR family RALTA_A3121 3301926 - 3300994 - | putative LYSOPHOSPHOLIPASE RALTA_A3122 3302470 - 3302036 - | putative Transcriptional regulator, MerR family copA2 3304995 - 3302467 - | copper transporting P-type ATPase TERM 2748 3304649 - 3304659 + g 83 -8.2 -4.56597 | overlap 3304632 ACTACGCCCGGCACG GCGC GCA GCGC TTTTTCGACCCGCGC TERM 2749 3304840 - 3304860 + g 78 -6.1 -4.57569 | gap 1 GGCGACGTCGCGCAC GCCC-GGC ACCTTG GCCAGGGC TTTTTCGACGCGTCC TERM 2750 3305147 - 3305163 + H 73 -10.8 -3.65902 | TCACACTATGTCTGT CGCGGC TCCAT GCCGCG TTTCGATCCCGTCAG RALTA_A3125 3305191 - 3305391 + | putative Copper ion binding protein; Heavy metal transport/detoxification protein TERM 2751 3305431 - 3305414 - T 100 -14.1 -4.72272 | opp_overlap 3305414 CCTCGCCAGCAAAAA GGGCGCC CCCG GGCGCCC TTTTCTTCAGCCTGC TERM 2752 3305414 - 3305431 + T 100 -14.1 -4.64676 | opp_overlap 3305414 CCTCGCCAGCAAAAA GGGCGCC CCCG GGCGCCC TTTTCTTCAGCCTGC RALTA_A3126 3306181 - 3305459 - | putative Outer membrane protein, OmpW family TERM 2753 3306222 - 3306241 + r 73 -8.5 -4.015 | overlap 3306223 3306237 CTGCCGCGTGCATTA TCCGGCG AGCCCG CGCCGGG TTGTTTCATCAATGA TERM 2754 3306404 - 3306380 - R 77 -2.7 -5.00616 | overlap 3306381 3306393 3306394 GCGCGGCGGAAAAAA CCCTGACACAG AAG CGGTTTTAGGG CCCAGGCGCGCAACA TERM 2755 3306446 - 3306393 - R 86 -15.1 -3.5947 | overlap 3306380 3306394 AACCCTGACACAGAA GCGGTTTTAGGGCCCAGGCGCGC AACAGCGG GCGCGCCTGGGCCCGGATGCCGT CAGGGTGTCACGATG TERM 2756 3306445 - 3306394 - R 87 -18.6 -2.752 | overlap 3306380 3306393 ACCCTGACACAGAAG CGGTTTTAGGGCCCAGGCGCGC AACAGCGG GCGCGCCTGGGCCCGGATGCCG TCAGGGTGTCACGAT RALTA_A3127 3308434 - 3306446 - | putative enzyme with 2 metallo-hydrolase/oxidoreductase domains, 2 TPR-like domains, sterol carrier protein domain; similar to E.coli yjcS, annotated putative alkyl sulfatase TERM 2757 3308861 - 3308824 - g 72 -13.5 -3.14564 | gap 1, opp_overlap 3308829, overlap 3308829 3308830 GCATTTCGGCAGCAA GGAA-ATGCTGCTGGCGG AGG CCGCCACCAGCCTGTTCC GCCAGATCGGCGAGG TERM 2758 3308855 - 3308829 - g 81 -12.2 -3.95584 | opp_overlap 3308829, overlap 3308824 3308830 TCGGCAGCAAGGAAA TGCTGCTGGCGG AGG CCGCCACCAGCC TGTTCCGCCAGATCG TERM 2759 3308854 - 3308830 - g 74 -15.7 -2.97029 | opp_overlap 3308829, overlap 3308829 3308824 CGGCAGCAAGGAAAT GCTGCTGGCGG AGG CCGCCACCAGC CTGTTCCGCCAGATC RALTA_A3128 3308597 - 3309250 + | putative transcriptional regulator, TetR family RALTA_A3129 3310225 - 3309251 - | putative Ornithine cyclodeaminase pbpC 3312532 - 3310307 - | Penicillin-binding protein, transglycosylase and transpeptidase RALTA_A3131 3313233 - 3312529 - | hypothetical protein TERM 2760 3312953 - 3312943 - G 72 -4.6 -4.45544 | overlap 3312944 3312946 3312948 GCCCACGAAGGAAAA CGAC AGC GCCG GCAGCGCCAGCAGGA TERM 2761 3313214 - 3313161 - G 72 -14.6 -2.87564 | gap 2 GCAGCGCGCCATAGA TGAGGCCGGCCATCGCGCCCGCGAGC CACC ACTCGCGCACGCG-CG-CCGGCATCA TCGCGGAAAGCCAGC RALTA_A3132 3319301 - 3313230 - | conserved hypothetical protein, COG2373; putative exported protein TERM 2762 3319072 - 3319055 - G 82 -14.1 -3.72576 | CGCCGGTGCAGGAAA CCGCCGC GGGT GCGGCGG CCTGGACATCGCCCA TERM 2763 3319206 - 3319159 - G 86 -14 -3.85698 | gap 1 CCTTCCGGGGAGAAA CG-GCTCACCTGCGCGGCCAGCG CGC CGCCGGGCAGGCTGGCGAGCGCG CCCGCCAGGGCCGCT RALTA_A3133 3319894 - 3319409 - | putative transcriptional regulator, AsnC family TERM 2764 3320337 - 3320323 - g 71 -2.7 -4.65895 | CTGGGCATGGAAAAA GACCG CGTGC CGGAC TTCGACCAGCTCAAC phhA 3320065 - 3320994 + | PHENYLALANINE 4-HYDROXYLASE TERM 2765 3321091 - 3321053 - f 86 -13.7 -3.90744 | gap 1, opp_overlap 3321043 3321050 3321049, overlap 3321054 CGCTTTGTGAAACAA TGCCGGCATGCCCGCCGC CAAG GCG-CGGGCGGGCCGGCT GTCCGCATTGATTTG TERM 2766 3321090 - 3321054 - f 87 -17.2 -2.94232 | gap 1, opp_overlap 3321043 3321050 3321049, overlap 3321053 GCTTTGTGAAACAAT GCCGGCATGCCCGCCGC CAAG GCG-CGGGCGGGCCGGC TGTCCGCATTGATTT phhB 3321144 - 3321443 + | PTERIN-4-ALPHA-CARBINOLAMINE DEHYDRATASE RALTA_A3136 3321600 - 3322304 + | putative response regulator, CheY family RALTA_A3137 3322518 - 3322354 - | conserved hypothetical protein; putative exported protein TERM 2767 3322554 - 3322524 - gR 72 -13.9 -2.73875 | opp_overlap 3322543, overlap 3322521 CCGGCTCCAACATCA GCCTGCGCGTGCA CCTTC TGCGCGCGCTGGC CACGCCACTGTTCGC TERM 2768 3323791 - 3323812 + Gr 71 -2.1 -4.56597 | overlap 3323773 CATCCCGCCGCAGCG GCGCGAGGA AGTG TTCAAGCGC TTTTTCCGCGGCGAC RALTA_A3138 3322364 - 3324061 + | putative sensor hybrid histidine kinase RALTA_A3139 3324598 - 3324083 - | hypothetical protein hupB1 3325731 - 3326009 + | DNA-binding protein HU-beta, NS1 (HU-1), plays a role in DNA replication and in rpo translation TERM 2769 3326230 - 3326192 - f 71 -13.1 -3.03159 | gap 1, overlap 3326213 CCAAGTCTTCCAACA GGCGTCCAGCCTTGGCCA GAAC TGGCC-ATGCCGGGCGCC GTGCCATGTGGGGCC TERM 2770 3326689 - 3326699 + G 75 -6.8 -4.41348 | opp_overlap 3326672, overlap 3326673 3326671 3326687 CAATCCGCCGCCGGC GGCA AGC TGCC TTTCTTTCCCGGACG RALTA_A3141 3326249 - 3327241 + | conserved hypothetical protein, COG4322 dinB 3328398 - 3327319 - | DNA polymerase IV, devoid of proofreading, damage-inducible protein P RALTA_A3143 3329368 - 3328463 - | putative predicted permease rarD TERM 2771 3328805 - 3328772 - G 73 -13.1 -3.53012 | overlap 3328795 CGCTGCGTGGGTAAA GCTGTCCTGGCCGGT GGCG AACAGCCAGGCCAGC GCCGCGGCAGCCAGC TERM 2772 3329456 - 3329481 + r 76 -13.3 -3.53012 | opp_overlap 3329456 GCCATCAACAAAAAA CCCCATGCTCC CGCA GGAACATGGGG TTTGCGGCGGCGGGC TERM 2773 3329481 - 3329456 - R 100 -15.5 -5.5112 | opp_overlap 3329456 GCCATCAACAAAAAA CCCCATGCTCC CGCA GGAACATGGGG TTTGCGGCGGCGGGC RALTA_A3144 3330656 - 3329520 - | putative periplasmic solute-binding receptor TERM 2774 3330555 - 3330573 + g 86 -9.5 -4.65747 | overlap 3330514 CGCGGCCGGGCCGCT GGCGGCG GCAGG CGCTGCC TTTTCTTCACCCTTG TERM 2775 3330654 - 3330642 - G 73 -7.7 -4.1891 | CGCTTTCAACAGAAA GGAAC GAC GTTCC ATCTCCACTTCTCCT TERM 2776 3330898 - 3330913 + H 76 -8.2 -4.21462 | opp_overlap 3330874 CTTTCGGCACGGGGC CCCGCG CAAG TGCGGG TTTTCGCTAGTCGAT TERM 2777 3332033 - 3332050 + G 74 -14.1 -3.25719 | ACCATGTGGGCCGGC CGGCGCG ACAA CGCGCCG TTCCTGATGTCATCC RALTA_A3145 3331130 - 3332827 + | putative maltoporin aqpS 3333551 - 3332811 - | aquaglyceroporin, Major intrinsic protein family RALTA_A3148 3334342 - 3333851 - | hypothetical protein TERM 2778 3334578 - 3334608 + r 71 -14.1 -2.56449 | opp_overlap 3334583, overlap 3334583 CTGGCCGCCCAATGC AAAAAGCCCGGCT GCAAG AGCCGGGCTTTTC CTGTTCTGGTGGCCT TERM 2779 3334583 - 3334603 + r 100 -14 -4.47259 | opp_overlap 3334583, overlap 3334578 CGCCCAATGCAAAAA GCCCGGCT GCAAG AGCCGGGC TTTTCCTGTTCTGGT TERM 2780 3334603 - 3334583 - R 100 -14 -4.74103 | opp_overlap 3334583 3334578 CGCCCAATGCAAAAA GCCCGGCT GCAAG AGCCGGGC TTTTCCTGTTCTGGT RALTA_A3149 3335461 - 3334751 - | putative RESPONSE REGULATOR TERM 2781 3335349 - 3335363 + g 72 -8.5 -4.09739 | overlap 3335334 GCCGCACGGTAATCG CGCGC CTGTT GCGCG TTTTCCGCGAGTTCG RALTA_A3150 3337946 - 3335514 - | putative SENSOR HISTIDINE KINASE TERM 2782 3336642 - 3336654 + g 75 -4.7 -4.63218 | overlap 3336638 GGCCTTCGATTGCTC CAGCG CGG CGCGG TTTTCTTCCACCGCC RALTA_A3151 3338818 - 3337943 - | conserved hypothetical protein, PROLINE RICH; putative membrane anchored protein TERM 2783 3338775 - 3338754 - G 82 -17.3 -3.05384 | opp_overlap 3338752 CGGCCGGGCACGGAA TCCGCGCCG GTGT CGGCGCGGA GGTCTTCAACGCGAA rsmB1 3340261 - 3338828 - | 16S rRNA m5C967 methyltransferase, S-adenosyl-L-methionine-dependent TERM 2784 3340360 - 3340333 - R 100 -14.8 -5.41143 | opp_overlap 3340332 3340331 CACGGGCCAAAAAAA GCCCGCCGGTCC ACGC GGAACAGCGGGC AGTTTACCTTGTGAC RALTA_A3153 3341263 - 3340403 - | similar to htpX, putative metalloendopeptidase, family M48 TERM 2785 3340952 - 3340909 - G 73 -16 -2.62184 | gap 1 CGCGCTCGGACAGCA CCCGCAGGATGCCGGTGGTGG CCG CCACCGC-GGCATGCTCCGGG TTGCGGCCGGTGGCA TERM 2786 3341329 - 3341313 - R 71 -5 -4.42386 | opp_overlap 3341314, overlap 3341314 GCCTCAGGCAGAAAA GCGGGC GCGAT GCCCGT TAGATAGGGGCCGAT fmt 3342465 - 3341452 - | 10-formyltetrahydrofolate:L-methionyl-tRNA(fMet) N-formyltransferase TERM 2787 3342516 - 3342487 - R 71 -11.3 -3.53012 | opp_overlap 3342484 3342487 3342492, overlap 3342488 TTCCGTGGCCTGAAA TGGCACCGGCCGC TATA GCGGCCGGTATCG TGGTTCTTCGGAAGT TERM 2788 3342487 - 3342516 + r 74 -13.5 -2.93252 | opp_overlap 3342487 3342488, overlap 3342484 3342492 TTCCGTGGCCTGAAA TGGCACCGGCCGC TATA GCGGCCGGTATCG TGGTTCTTCGGAAGT TERM 2789 3342515 - 3342488 - R 75 -14.8 -2.71712 | opp_overlap 3342487 3342484 3342492, overlap 3342487 TCCGTGGCCTGAAAT GGCACCGGCCGC TATA GCGGCCGGTATC GTGGTTCTTCGGAAG TERM 2790 3342492 - 3342511 + r 83 -16.4 -2.89421 | opp_overlap 3342488 3342487, overlap 3342487 3342484 TGGCCTGAAATGGCA CCGGCCGC TATA GCGGCCGG TATCGTGGTTCTTCG def 3343125 - 3342619 - | peptide deformylase RALTA_A3156 3343286 - 3344467 + | conserved hypothetical protein; putative peptidoglycan binding protein, LysM domain; putative exported protein TERM 2791 3345471 - 3345422 - g 89 -18.5 -3.37493 | gap 1, overlap 3345423 GCTGGAAGAGATCAA CCTGGGGCCGGCGGCCCCGGCT CGTGGGC AGCCGGCGGCGCCGG-CCCTGG CTGCGCCACCGGCTT TERM 2792 3345471 - 3345423 - g 79 -18.7 -2.62175 | overlap 3345422 CTGGAAGAGATCAAC CTGGGGCCGGCGGCCCCGGCT CGTGGGC AGCCGGCGGCGCCGGCCCTGG CTGCGCCACCGGCTT smf 3344475 - 3345677 + | similar to smf, putative DNA processing chain A (drpA); putative exported protein RALTA_A3158 3345760 - 3346164 + | PUTATIVE THIOREDOXIN TERM 2793 3346368 - 3346353 - g 78 -6 -4.58663 | ATCATCGCGGAAAAA CCGTCG GTCG CGGCGG ATATCGCCCGTGCCC TERM 2794 3347207 - 3347237 + G 79 -14.7 -3.28791 | GTTCGACCTGACCAC GCTGCAGCGCGAG GCCAA CTCGCGCTTCGGC TTCTCGGCCAAGAAT TERM 2795 3347425 - 3347413 - g 72 -3.3 -4.65916 | opp_overlap 3347413, overlap 3347393 3347414 CGCACGCCAAGAAAA TCCTG GCG CAGGG TTGGGTTCGCCCGAA topB 3346323 - 3349013 + | DNA TOPOISOMERASE III TERM 2796 3349025 - 3349053 + T 95 -13.1 -4.36914 | opp_overlap 3349030, overlap 3349028 3349030 GTAAGCCAGCCAAGC AAAAACGCCCGGC ATG GCCGGGCGTCTTG TTTTCTGCGGCGCGC TERM 2797 3349028 - 3349050 + T 100 -14.8 -4.30995 | opp_overlap 3349030, overlap 3349025 3349030 AGCCAGCCAAGCAAA AACGCCCGGC ATG GCCGGGCGTC TTGTTTTCTGCGGCG TERM 2798 3349048 - 3349030 - T 100 -17.4 -4.88407 | opp_overlap 3349028 3349025 3349030 CCAGCCAAGCAAAAA CGCCCGGC ATG GCCGGGCG TCTTGTTTTCTGCGG TERM 2799 3349030 - 3349048 + T 100 -17.4 -3.75581 | opp_overlap 3349030, overlap 3349028 3349025 CCAGCCAAGCAAAAA CGCCCGGC ATG GCCGGGCG TCTTGTTTTCTGCGG RALTA_A3160 3350027 - 3349086 - | putative transcriptional regulator, LysR family RALTA_A3161 3350229 - 3350519 + | conserved hypothetical protein; putative exported protein TERM 2800 3350602 - 3350632 + T 100 -17.7 -4.44046 | gap 1, opp_overlap 3350605 CGCTTTATTGGGGAA GAAGCCCGC-ACCG GTCC CGGTAGCGGGCTTC TTTGTTTCGGATGCC TERM 2801 3350629 - 3350605 - T 81 -13.6 -3.62597 | gap 1, opp_overlap 3350602 TTTATTGGGGAAGAA GCCCGC-ACCG GTCC CGGTAGCGGGC TTCTTTGTTTCGGAT TERM 2802 3350756 - 3350728 - T 81 -13.9 -3.57561 | opp_overlap 3350734, overlap 3350734 GGTGAAGCGCCCAAA GAAAAACGGGCCA TGC CGGCCCGTTTTGC TGACCCCGCTGCGAC TERM 2803 3350734 - 3350750 + T 89 -10.8 -4.25104 | opp_overlap 3350734 3350728 GCGCCCAAAGAAAAA CGGGCC ATGCC GGCCCG TTTTGCTGACCCCGC TERM 2804 3350750 - 3350734 - T 100 -11.5 -5.27335 | opp_overlap 3350734, overlap 3350728 GCGCCCAAAGAAAAA CGGGCCA TGC CGGCCCG TTTTGCTGACCCCGC RALTA_A3162 3351227 - 3350772 - | conserved hypothetical protein, putative membrane protein TERM 2805 3351119 - 3351141 + g 71 -10.4 -3.7732 | overlap 3351120 CGGCACCGGCGACGC CGCCCAGGGC GCC GCCCAGGGCA TTGTTCATGTCGCCC TERM 2806 3351378 - 3351403 + r 86 -17.7 -2.59431 | opp_overlap 3351378, overlap 3351374 3351382 3351397 3351401 AACACTTAATAAAAA GACAGGCGATC ATGT GATCGCCTGTC TGCATTGTCCGCCGC TERM 2807 3351403 - 3351378 - R 100 -17.7 -5.12971 | opp_overlap 3351378 3351374 3351382 3351397 3351401 AACACTTAATAAAAA GACAGGCGATC ATGT GATCGCCTGTC TGCATTGTCCGCCGC RALTA_A3163 3351647 - 3351453 - | conserved hypothetical protein, DUF466 cstA 3353742 - 3351670 - | carbon starvation protein TERM 2808 3354728 - 3354701 - g 74 -12 -3.58343 | gap 1 TGGATGACGTCGAAA GCACGCTGCGCCA GCT CGACGC-GCGTGC CGAGACCGATATCCG TERM 2809 3355329 - 3355355 + G 71 -9.5 -3.70902 | overlap 3355329 TGCCGATGCCACGCG CC-TGGCCGTGCG CGA CG-ACGGCCACGG TTTCGATGTCGCGCG RALTA_A3165 3354100 - 3355554 + | putative SENSOR HISTIDINE KINASE TERM 2810 3355881 - 3355904 + G 80 -17.4 -2.94099 | opp_overlap 3355871 GAATATGTGCGCCAG GCCGTGCGCG CCGG CGCGCGCGGC TATGTGCTCAAGGAC RALTA_A3166 3355551 - 3356237 + | putative response regulator, LuxR family TERM 2811 3356263 - 3356242 - T 100 -17.3 -5.24531 | AGGGCGCATAAAAAA CGCCCGCCT TGGA AGGCGGGCG CTGGCTGGCTCACGA pckG 3358145 - 3356289 - | PHOSPHOENOLPYRUVATE CARBOXYKINASE TERM 2812 3358371 - 3358396 + H 71 -8.1 -3.85698 | CGCTTCGCCCGCGCA GCGTGGCCTGC GGTT GCCGGCCGGGC TTTGTCCGGAGGCAG TERM 2813 3358640 - 3358599 - H 71 -10.9 -3.4811 | gap 2, overlap 3358597 CGTTTCACAACAATA CTGTTGGCCGACGCGCGCC TCGGTG GGCGCGCG-C-ACCAACTG GCACAACGTCCCGAA TERM 2814 3359480 - 3359443 - g 71 -2.4 -4.63486 | opp_overlap 3359465, overlap 3359444 ACTGCTGGAAGAAAA CGCCCTGGTCACCGCG CTGAAC CGCGGCCGCCCTGGCA TGGCGGCGGTCGACG serA3 3358673 - 3359698 + | D-3-PHOSPHOGLYCERATE DEHYDROGENASE / D-isomer specific 2-hydroxyacid dehydrogenase TERM 2815 3359721 - 3359754 + F 100 -22.5 -3.62224 | overlap 3359722 CGGGCTTCCGCCGGT TGCTCGCCTCTCCCG CGCG CGGGAGAGGCGAGCC TTGTTCGGACGGTGT TERM 2816 3359722 - 3359753 + F 100 -26 -2.77013 | overlap 3359721 GGGCTTCCGCCGGTT GCTCGCCTCTCCCG CGCG CGGGAGAGGCGAGC CTTGTTCGGACGGTG TERM 2817 3359901 - 3359887 - f 73 -8.5 -4.02817 | CCCTGACAACAACAA GGCGC CCTTC GCGCC GATCCCTCTCCCCAA TERM 2818 3361036 - 3361091 + G 85 -18.3 -3.03038 | gap 3, overlap 3361043 3361045 GGCGCTGGCGGTGTC GCAGC-GCGCGCGCCTGCTG-GGCTGCC GCT GGCAGCCTCCGCAGGCG-GCCCAGCAGC TCTGATTTCCCTCTG RALTA_A3169 3359924 - 3361096 + | putative transporter, Major facilitator superfamily MFS_1 RALTA_A3170 3361248 - 3361886 + | conserved hypothetical protein, MOSC domain (MOCO sulphurase C-terminal) TERM 2819 3362853 - 3362821 - g 78 -16.3 -3.01712 | TGGTGCTGCCCAATA GCACCCAGCCGATGG TCA CCATCGCCCAGGTGC AGCCGATCGCGGTCA RALTA_A3171 3362148 - 3363383 + | putative secretion protein, HlyD family TERM 2820 3363716 - 3363677 - g 82 -13.6 -3.73783 | gap 1, opp_overlap 3363694 CATCGAATTCAACAA CGACCGCGACATCGACGAC GCC GCCGTCGACGT-GCAGGCG GCGCTGTTCCGCGCG RALTA_A3172 3363387 - 3366584 + | putative multidrug transporter, RND family TERM 2821 3366843 - 3366801 - g 73 -12 -3.41051 | gap 2 CGAGGTCCACGACAA CGCCGCCGGCCAGCGGCAGC GGCTG GCCGC-GCTGACCCGCG-CG GTCGAGCAAGGCTGG TERM 2822 3367044 - 3367098 + G 72 -8.5 -4.07568 | overlap 3367002 3367047 GCCGCTGGTCGCCGC CAACTTGTCGCGCGCCGATGCG-GCGA GGA TCGTGCGCGGCGG-GCTCGACGGGCTG TTTTCGGCGGACGAG RALTA_A3173 3366649 - 3367488 + | putative lipoprotein TERM 2823 3368136 - 3368185 + G 71 -10 -3.72576 | gap 3, opp_overlap 3368135 CGGCTTTGACCAGAC CGGCCGCTCG-CTGGGC-GCGGCGA TGG TCGCCGCGGGCCAGGCCAA-GGCCG TTTCGTACGACAACA RALTA_A3174 3367993 - 3368961 + | conserved hypothetical protein, UPF0065 RALTA_A3175 3369211 - 3369684 + | hypothetical protein RALTA_A3176 3369713 - 3371227 + | conserved hypothetical protein, DUF112 TERM 2824 3371255 - 3371281 + F 100 -13.7 -4.27062 | gap 1, overlap 3371250 TGCGATAGTCTCTCC GGGGCCCGGCGC CATG GCGC-GGGCCTC TTTGCTTTTCCTTCG TERM 2825 3371331 - 3371309 - f 76 -9.1 -4.02817 | gap 1, overlap 3371310 TCGTCACAACAACAA GCGCCGGCGC CCCC GCGCCAG-GC CGCTGACCGATGCCG RALTA_A3177 3371341 - 3372399 + | putative ammonia monooxygenase RALTA_A3178 3372451 - 3372864 + | putative enzyme, Thioesterases/thiol ester dehydrase-isomerases superfamily RALTA_A3179 3372880 - 3373776 + | hypothetical protein TERM 2826 3373945 - 3373914 - g 73 -15.8 -2.52464 | gap 1 GCGCCCGCGAAGTCA GCGCGGCGCC-GCCG GTG CAGCAGGTGCCGCGC GCGCGCAGCGGCCGC RALTA_A3180 3373844 - 3375340 + | putative GLUTATHIONE REDUCTASE OXIDOREDUCTASE TERM 2827 3375456 - 3375484 + F 77 -13.8 -3.30474 | opp_overlap 3375445 3375454 3375451, overlap 3375450 AGGAGGCAAAGAGCG CGTCGCCTGGGC GGCTG GCCAAGGCGGCG TTGGTCGTTCTGGCG RALTA_A3182 3375882 - 3377141 + | Transposase of insertion sequence ISRta2, IS256 family TERM 2828 3377151 - 3377177 + T 85 -14.5 -3.65902 | CGTTAAGATATTGCT GGCTCACCGTT CCATC GACGGTGAGCC TTTACCTGCCCTGCA RALTA_A3183 3378724 - 3377243 - | putative SENSOR histidine KINASE RALTA_A3184 3379400 - 3378726 - | putative response regulator TERM 2829 3379696 - 3379741 + H 83 -15.3 -3.15249 | gap 1 CGCCGCCGCCTGCTG GGCGCCGCGCTGCTGGGCGGCG CGG CGTTGCCC-GCGGCATGGCCCC TTCATGCCCAGTCTA TERM 2830 3379995 - 3379967 - g 76 -13.9 -3.53012 | gap 1, opp_overlap 3379974 3379993 3379994, overlap 3379950 GCTTCCTCGCCGAAA CCGCGGC-GCTG TCCGGC CAGCCGCCGCGG CCGGGGGCCATCTTT RALTA_A3185 3379723 - 3380817 + | hypothetical protein acrR 3381592 - 3380849 - | transcriptional repressor for acridine efflux pump ACRAB, multidrug efflux system repressor (TetR/AcrR family) acrA 3382209 - 3383459 + | component of acridine efflux pump, multidrug efflux system TERM 2831 3386055 - 3386005 - g 85 -18.8 -3.01712 | overlap 3385985 TGCCGGCGGTGAAGA TCGCGGGCCAGGCCGCGCCGGGAC GCA GTACCGGCGAAGCCATGCGCGCGA TGGAAGAGAACTTCG acrB 3383532 - 3386684 + | component of acridine efflux pump, multidrug efflux system RALTA_A3189 3386687 - 3388171 + | putative outer membrane protein TERM 2832 3388186 - 3388230 + T 81 -16 -2.75382 | gap 1, opp_overlap 3388198, overlap 3388198 3388224 GCGCCGCCTGTTGCC CTAAC-AAAAAAACGACGCGC CTCG GCGCGTCGTTTTTTTTGCTGG TGGTTCGCTCCCCTC TERM 2833 3388198 - 3388217 + T 100 -15 -5.88471 | opp_overlap 3388198, overlap 3388186 GCCCTAACAAAAAAA CGACGCGC CTCG GCGCGTCG TTTTTTTTGCTGGTG TERM 2834 3388217 - 3388198 - T 100 -15 -5.7946 | opp_overlap 3388186 3388198 GCCCTAACAAAAAAA CGACGCGC CTCG GCGCGTCG TTTTTTTTGCTGGTG TERM 2835 3388294 - 3388314 + T 100 -7.5 -5.55664 | opp_overlap 3388294, overlap 3388283 3388282 GGTTCATGCGCTAAA GCGAGTGGT TTC GCCACTGGC TTTTTTTCGTCCTCA RALTA_A3190 3389202 - 3388327 - | putative Outer membrane protein, OmpW family TERM 2836 3389237 - 3389210 - R 81 -12 -3.92869 | gap 1, opp_overlap 3389224 3389231 TGATGCATCGATAAA GGCGCCGGGGC TGCGATG GCCCCGG-GCC TGGGCCGGCTTATTG RALTA_A3191 3390527 - 3389247 - | hypothetical protein RALTA_A3192 3391917 - 3390562 - | putative lipoprotein TERM 2837 3391986 - 3392016 + r 73 -11 -3.57792 | overlap 3391987 CTGCGTCCGGATCCT GTCGTGAGCGGCGA CTG TCGCCGCGCGCGGG TTTCAGCGTCAATAG TERM 2838 3391987 - 3392015 + r 75 -14.5 -2.74461 | overlap 3391986 TGCGTCCGGATCCTG TCGTGAGCGGCGA CTG TCGCCGCGCGCGG GTTTCAGCGTCAATA RALTA_A3193 3393027 - 3392077 - | conserved hypothetical protein; putative exported protein TERM 2839 3393094 - 3393121 + r 81 -15.6 -3.06312 | gap 1 GCGGGCGCACGGGGT CCA-CGGGGCCGC AGC GCGGCCTCGCTGG TTGGATCGACGGTTT TERM 2840 3393150 - 3393193 + r 83 -16 -2.94099 | gap 2 TTTGGTTGCGTGAGC GCGGCG-GCGCCGT-GCCGG CGGTAA CCGGCGGCGGCGCGCACCGC TATGTCCTGGAGCGC RALTA_A3194 3394176 - 3393193 - | putative TRANSCRIPTIONal REGULATOR, TetR family RALTA_A3195 3396044 - 3394449 - | putative FAD flavoprotein oxidoreductase, GMC family Oxidoreductase RALTA_A3196 3396657 - 3396052 - | conserved hypothetical protein; putative exported protein; putative outer membrane anchored protein TERM 2841 3396956 - 3396974 + G 72 -13.8 -3.14132 | CGAGCAGCTGTGCGC CGTCGGCG TGC CGCCGGCG TTGCTCGACGCAGGG RALTA_A3197 3396828 - 3397889 + | putative Transcriptional Regulator, AraC family TERM 2842 3399003 - 3398975 - g 74 -13.2 -3.27923 | gap 2 TCCGAAGATCATGAA GGTGGTCGAGCGCG TCG CGCGC-CG-CCACC TGGCGCGGCAGGTGC adhF1 3398148 - 3399743 + | Cyclohexanone monooxygenase, Flavin-containing monooxygenase (FMO) RALTA_A3199 3399805 - 3400695 + | putative Short-chain dehydrogenase/reductase SDR precursor RALTA_A3200 3400707 - 3401654 + | putative enzyme, Alpha/beta hydrolase fold RALTA_A3201 3401704 - 3402576 + | conserved hypothetical protein, putative membrane protein TERM 2843 3402638 - 3402618 - g 71 -10.4 -3.71848 | overlap 3402619 TTCGTCTATGAAGAA GCGCTCGG CATGC CCGAGCAC GGCATCGCGCCCGGC RALTA_A3202 3402573 - 3402737 + | putative RUBREDOXIN RALTA_A3203 3403592 - 3402759 - | putative TRANSCRIPTIONal REGULATOR, MerR family RALTA_A3204 3403687 - 3404643 + | putative transcriptional Regulator, LysR family TERM 2844 3405022 - 3404985 - g 75 -8.9 -4.18018 | CGTGGTGATCGAAAA CCTGGGCGGCGCCGGCG GCAC CATCGGCGCGTCCAAGG TGGTCAAGGCAGAAG TERM 2845 3405656 - 3405643 - g 70 -3.7 -4.45738 | overlap 3405645 GACGTGAAGAAGAAA CTGGC CGAG GCCGG CGTGGAAGTGGCGCC RALTA_A3205 3404746 - 3405759 + | conserved hypothetical protein, UPF0065 RALTA_A3206 3405875 - 3406852 + | putative Succinylglutamate desuccinylase/aspartoacylase RALTA_A3207 3407496 - 3406954 - | putative lipoprotein RALTA_A3208 3407859 - 3407659 - | hypothetical protein RALTA_A3209 3408485 - 3407892 - | hypothetical protein TERM 2846 3408552 - 3408523 - R 73 -3.5 -4.74504 | gap 1, overlap 3408531 3408540 AGCGGAAGGCAAAAA CAGCGAAAGGCGAA TTA TGCGCCCTG-GCTG CCGCAAACGCGCGCA dinD 3409501 - 3408632 - | DNA-damage-inducible protein, part of SOS response mnmE 3411077 - 3409650 - | GTPase involved in tRNA modification and in thiophene and furan oxidation TERM 2847 3409765 - 3409789 + g 82 -11.3 -4.15044 | opp_overlap 3409763, overlap 3409756 3409766 TCTTCCGCGAACAGG TCCAGCGCCTG GGC CTGGCGCTGGC TTTGTTCGGCGGCCA TERM 2848 3409766 - 3409788 + g 74 -14.8 -3.08812 | opp_overlap 3409763, overlap 3409756 3409765 CTTCCGCGAACAGGT CCAGCGCCTG GGC CTGGCGCTGG CTTTGTTCGGCGGCC RALTA_A3212 3411984 - 3411169 - | conserved hypothetical protein; putative exported protein TERM 2849 3411381 - 3411439 + g 70 -15.3 -2.70932 | gap 3 GCTTGCCGGCGATGC GCTGCGCGTGCACCGCGGCCGGGTCGCC ATGGCG GGCGTCCCGGGC-CAGTGC-C-CGCAGC TGCTTGCGGCCGCGC RALTA_A3213 3412319 - 3411981 - | hypothetical protein TERM 2850 3412064 - 3412079 + g 71 -11.8 -3.60792 | GCGCCTGGGCAGGAT GCGGCG CCAG CGCCGC TTTGGCGGTTGACAC RALTA_A3214 3412634 - 3413020 + | putative Glyoxalase/bleomycin resistance protein/dioxygenase tam 3413798 - 3413028 - | trans-aconitate methyltransferase TERM 2851 3414075 - 3414040 - R 100 -17 -3.73775 | opp_overlap 3414048, overlap 3414048 CTCAGCCTCAGCAAA GACAAAAAGCCCGGCA TCTC TGCCGGGCTTTCCATC ACCGCATCTTGCAAC TERM 2852 3414048 - 3414067 + r 85 -15 -3.64822 | opp_overlap 3414040 3414048 CAGCAAAGACAAAAA GCCCGGCA TCTC TGCCGGGC TTTCCATCACCGCAT TERM 2853 3414067 - 3414048 - R 100 -15 -5.22289 | opp_overlap 3414048, overlap 3414040 CAGCAAAGACAAAAA GCCCGGCA TCTC TGCCGGGC TTTCCATCACCGCAT yidC 3415774 - 3414095 - | preprotein translocase, cooperates with SecYEG and SecDFyajC translocon, membrane component TERM 2854 3415146 - 3415186 + g 77 -17.5 -2.55351 | overlap 3415146 AGTTCCAGGTACAGC GTCGGCGAGACCGGCGCGG TGC CCGCGTTGGTCACGTCGAA CTTGCTGTCGACCAC TERM 2855 3415146 - 3415187 + g 87 -17.3 -3.25823 | gap 1, overlap 3415146 AGTTCCAGGTACAGC G-TCGGCGAGACCGGCGCGG TGC CCGCGTTGGTCACGTCGAAC TTGCTGTCGACCACG RALTA_A3218 3416077 - 3415796 - | conserved hypothetical protein, DUF37 rnpA 3416561 - 3416088 - | Ribonuclease P protein component (RNaseP protein) (RNase P protein) (Protein C5) TERM 2856 3416515 - 3416486 - G 70 -14.5 -2.71712 | opp_overlap 3416490 3416492, overlap 3416485 3416492 GCCGGGGCCGCAAAG CAAAAACGGATGA AAAC TCATCCGTCTTTG TCAGCCTCGCGGCTT TERM 2857 3416509 - 3416492 - G 95 -9.9 -4.98531 | opp_overlap 3416492 3416490, overlap 3416486 3416485 GCCGCAAAGCAAAAA CGGATGA AAAC TCATCCG TCTTTGTCAGCCTCG TERM 2858 3416609 - 3416664 + r 73 -13 -3.17075 | TACCGGCCATCCGGA CAGCGAGGCGGTTGGCCTGGACCGCG TTGC CGCGGTCCGGACCGGTCGCCCGGCCC TTAGATTGCCAGGCG rpmH 3416799 - 3416665 - | 50S ribosomal subunit protein L34 SEQUENCE gi|188591327|ref|NC_010529.1| Cupriavidus taiwanensis plasmid pRALTA, complete sequence (length 557200) TERM 1 1577 - 1561 - g 70 -9.3 -3.91197 | opp_overlap 1569, overlap 1562 GCAGAAATCAGCAAA TCGCGCC TGC GGCGCGC CCTCGACCGCTATTC pRALTA_0001 19 - 2076 + | restriction modification Type III methylase TERM 2 3884 - 3895 + G 72 -5.8 -4.28361 | GGCCATCGACCCGGA CGGA AGTT TCCG TTTTGGTCGGGTTCC TERM 3 4730 - 4712 - g 86 -6.6 -4.86731 | overlap 4714 CGCGGTGAAAGAAAA GGCCGGAA TTC TCCCGGAC GGCACCGAAGTGCCA pRALTA_0002 2091 - 5081 + | putative Type III restriction enzyme TERM 4 5664 - 5676 + F 91 -3.3 -5.40072 | TCTGTTGGCCGCAGC TGTCG CCT CGTCA TTTTTTTGAGCAGAG TERM 5 7074 - 7060 - g 78 -6.4 -4.65838 | TACAGATCGCAAAAA CGACGA TCA TCATCG CGATGGGGAAGCTGA TERM 6 7609 - 7597 - g 72 -3.3 -4.57569 | TCACCCCCCCAAAAA GGGCT GAT ATCCC ACACCTCGAAATCGC TERM 7 7987 - 8006 + G 70 -9.2 -3.83026 | TGTCTACGTTAGGTG CGTCGGGC GCAC GCTCGGCG TTTACTGTGGGCGGG TERM 8 8220 - 8207 - g 71 -3.1 -4.56597 | GGCGCCTTGGAAAAA CCATT CCCT AACGG GTCGAATTGAGGGCG pRALTA_0006 5853 - 9059 + | putative restriction endonuclease/methyltransferase TERM 9 9338 - 9321 - T 77 -2 -5.08824 | gap 1, overlap 9322 9323 TTTCCATGCAAAAAA TGGCGGT AGCGG ACCGC-A GAGCCGCCCGCAGCA pRALTA_0007 10547 - 9600 - | hypothetical protein TERM 10 9717 - 9773 + g 74 -12.4 -3.64703 | gap 3, opp_overlap 9704 9717 9718 9747 9749, overlap 9718 CAGCTTCGCCAAGAA G-CGGCGCC-ATGCCGACTGC-GGCTG AGAGAA CAGCCAGCGCTCGGTGTCGGCGCCGTC TTTGCGTCCGAGGAC TERM 11 9718 - 9771 + g 84 -16.1 -3.40597 | gap 2, opp_overlap 9717 9718 9747 9749, overlap 9717 AGCTTCGCCAAGAAG CGGCGCC-ATGCCGACTGC-GGCTG AGAGAA CAGCCAGCGCTCGGTGTCGGCGCCG TCTTTGCGTCCGAGG TERM 12 10098 - 10121 + g 100 -14.6 -5.00616 | opp_overlap 10087 10090 AAATGCACGGTAGGC CTGCCGGCGA GTCA TCGTCGGCAG TTTTTTGGCGAGCGC TERM 13 10571 - 10626 + H 100 -26.4 -2.90763 | opp_overlap 10578, overlap 10575 TCCAAGACAGCCATC GGAAGGACTCTTGACGATGCGGGCGT AAGT GTGCCGGCATCGTCAAGAATCCTTCC TATATGGGCTATCGA TERM 14 10575 - 10622 + H 95 -20 -3.32498 | opp_overlap 10578, overlap 10571 AGACAGCCATCGGAA GGACTCTTGACGATGCGGGCGT AAGT GTGCCGGCATCGTCAAGAATCC TTCCTATATGGGCTA TERM 15 10619 - 10578 - H 78 -15.3 -2.73681 | opp_overlap 10575 10571 CAGCCATCGGAAGGA CTCTTGACGATGCGGGC GTAAGTGT GCCGGCATCGTCAAGAA TCCTTCCTATATGGG TERM 16 11779 - 11789 + H 76 -8.2 -4.14243 | CGATGCTCCAGTAGT CCGC CAG GCGG TTTTCCACTGGCGTC pRALTA_0009 12258 - 13757 + | transposase, IS21 family pRALTA_0010 13754 - 14590 + | transposase, IS21 family TERM 17 14639 - 14593 - T 76 -13.9 -3.1154 | gap 1, opp_overlap 14638, overlap 14591 14604 AACCATGACCTAACA CTCACCGACAATCATCCCGGCC AACC GGCCAAAATGATTGTCGCTG-G ACCGGCCGTCCTGCT TERM 18 14805 - 14827 + T 71 -11.2 -3.50853 | opp_overlap 14804 AAGAGCCAATTGAAC CCGCGCTCCT GGT AGGGGCGCAG TTGTGCTTCCAGCCC pRALTA_0013 17920 - 16700 - | transposase, ISL3 family TERM 19 17696 - 17680 - G 74 -11.5 -3.73072 | AACGGTCGCACCAAA CGCGCCG GCG CGGCACG TGCAGTACGACCCGA pRALTA_0015 19636 - 18326 - | hypothetical protein pRALTA_0016 23778 - 19633 - | conserved hypothetical protein; putative ATPase TERM 20 22221 - 22211 - G 72 -6.8 -4.38712 | opp_overlap 22211 22210, overlap 22212 22213 CGCAGCCCTACAAAA TGGC GTT GCCA CGCATCGAGGAGGTC pRALTA_0017 25040 - 23775 - | hypothetical protein TERM 21 24738 - 24728 - G 89 -2.4 -5.31059 | overlap 24720 AGACCAAGCAAAAAA TCGC ATA GCGC CGGCGGTCAAAGTCG pRALTA_0018 26707 - 25037 - | hypothetical protein pRALTA_0019 27044 - 27472 + | hypothetical protein pRALTA_0020 27586 - 28026 + | hypothetical protein pRALTA_0021 28698 - 28243 - | hypothetical protein TERM 22 28280 - 28317 + g 100 -27.3 -3.14211 | opp_overlap 28280 28284, overlap 28284 AGGGCCTGCGACCAA GAAACGCCCTTATGCGC TGCA GCGCATAAGGGCGTTTC TTGGTCAGGGGCCAT TERM 23 28317 - 28280 - G 100 -27.3 -3.14211 | opp_overlap 28280 28284, overlap 28284 AGGGCCTGCGACCAA GAAACGCCCTTATGCGC TGCA GCGCATAAGGGCGTTTC TTGGTCAGGGGCCAT TERM 24 28284 - 28313 + g 100 -22.3 -4.24342 | opp_overlap 28280 28284, overlap 28280 CCTGCGACCAAGAAA CGCCCTTATGCGC TGCA GCGCATAAGGGCG TTTCTTGGTCAGGGG TERM 25 28313 - 28284 - G 100 -22.3 -4.24342 | opp_overlap 28284 28280, overlap 28280 CCTGCGACCAAGAAA CGCCCTTATGCGC TGCA GCGCATAAGGGCG TTTCTTGGTCAGGGG pRALTA_0022 29153 - 28980 - | hypothetical protein TERM 26 30370 - 30355 - g 75 -5.4 -4.66163 | overlap 30357 AGTGGCACGGAAAAA TCTCCG ATCA CGGAAA ACATGGACTACGCGC pRALTA_0023 29197 - 30954 + | hypothetical protein pRALTA_0024 30955 - 31890 + | hypothetical protein TERM 27 32025 - 32076 + T 77 -15.9 -2.5955 | overlap 32022 GTGACGAGGTGTGAA TGGCCGTTGCCCTGCTTGCGCCA TCTGTT TTGCGCAAGCAGGGCAACGAGGA TCGCTTCTCAAGCCT pRALTA_0025 32809 - 32207 - | hypothetical protein TERM 28 32998 - 33024 + G 75 -5.1 -4.66163 | GAGCCGCCCGGTCAG CCCATCAATGA CGACC TCTTGGATGGG TTTTTGCGTCAAGGT TERM 29 33320 - 33338 + G 72 -4.5 -4.40132 | overlap 33315 33321 GTGTTTCCCATGCTG ACAGCGA TTCTC TCGCTGA TTTCTTCTCCTTCAT pRALTA_0026 32842 - 33945 + | hypothetical protein pRALTA_0027 34501 - 34253 - | hypothetical protein TERM 30 34559 - 34591 + r 72 -2.5 -4.69214 | overlap 34551 34560 TCTCTGCCTGGCGGC ACGCAGTGCGCAG CTAGTTT CTGGGCGCAGCGC TTTCTTTCTTCGCTC pRALTA_0028 35238 - 34666 - | hypothetical protein pRALTA_0029 35687 - 35403 - | hypothetical protein pRALTA_0030 37768 - 35774 - | conserved hypothetical protein, COG5293 TERM 31 36967 - 36989 + g 71 -2.6 -4.61482 | overlap 36947 TCTGAACGTTAGAAA GAGCGTTTTC CAC GACAGCTCTC TTGTTTTTTAGCGCA pRALTA_0031 37956 - 37759 - | hypothetical protein pRALTA_0033 38971 - 38006 - | hypothetical protein TERM 32 38090 - 38076 - G 72 -9.2 -4.02108 | opp_overlap 38082 GCCATGAGAACCAAA GCAGCG TCG CGCCGC AGTCGATCTGCAGCG TERM 33 39077 - 39030 - R 100 -21.4 -3.03124 | gap 1 TCGCAGGCTCGAACA TCTTCA-GTCGCCTCGGCCGCCA ACC TGGCGGCCGAGGCGACGCTAAGC AGTCAAGCCCGAGAG pRALTA_0034 40306 - 39599 - | hypothetical protein; putative membrane protein TERM 34 39779 - 39789 + g 77 -3.2 -4.7173 | CTCTAGAGCAAATCC CGTT GTT AGCG TTTTTCCATCTGCTA TERM 35 41120 - 41132 + G 100 -6.2 -5.58454 | opp_overlap 41105 41120 GCCAATTTGACATAA CGCC AGATC GGCG TTTTTTTGCTGTGGG pRALTA_0036 40558 - 41169 + | hypothetical protein pRALTA_0037 42448 - 41156 - | hypothetical protein pRALTA_0039 43510 - 42710 - | conserved hypothetical protein, SEC-C motif TERM 36 43640 - 43691 + r 73 -8.4 -4.08767 | gap 1 CCGCGCGCCAAGCCG GGTGCACCCCCGCGACCGTTCGCCG GAG CGGCGGCCGCTCCCGAGTG-GCTCC TTTTGGCCGGGTACG pRALTA_0040 44878 - 43985 - | putative hydrolase TERM 37 45036 - 45023 - R 72 -4.5 -4.57341 | gap 1 AATTGGGTCGAAAAA CG-GCG GGG CGCTCG TTAGAAATCAGCCCG pRALTA_0041 45613 - 45044 - | putative transcriptional regulator, TetR family yoeB 46258 - 45989 - | toxin of the YoeB-YefM toxin-antitoxin system yefM 46518 - 46255 - | antitoxin of the YoeB-YefM toxin-antitoxin system pRALTA_0045 46708 - 46529 - | hypothetical protein TERM 38 47389 - 47428 + G 81 -3.4 -4.95155 | gap 1, opp_overlap 47398, overlap 47391 47407 47409 CCGGGACGAGCGGCG CCGACACGAGCACCATGGG CCG CCCACGGCG-TTGTGCCTG TTTTTGTACTATCAG pRALTA_0046 46829 - 48874 + | hypothetical protein TERM 39 49322 - 49342 + G 77 -11.1 -3.92373 | overlap 49323 TGATCGCTGCCTGCA TCCGCGCAT TCT ATGCGCGGC TTTATGGCTCCCATG TERM 40 49323 - 49341 + G 72 -14.6 -2.95102 | overlap 49322 GATCGCTGCCTGCAT CCGCGCAT TCT ATGCGCGG CTTTATGGCTCCCAT pRALTA_0047 49249 - 50679 + | hypothetical protein pRALTA_0048 50672 - 51358 + | hypothetical protein TERM 41 51971 - 52000 + G 74 -11.3 -3.74872 | gap 1, opp_overlap 51961 CAAGACGCTGGTCGG GCCGCGCGAGGCCG AAG CGGCGGCGCG-GGC TTTCGTCCAGTCCAT TERM 42 54391 - 54344 - g 74 -13.7 -3.28745 | gap 3, opp_overlap 54383, overlap 54339 GTTCCAAGAACTGAA CCGGCTGGCCGAGACACAAACGCC GGT GG-ATTTGT-TCTCGGCC-GCCGA AGGCGTCCTTTCTGC TERM 43 54383 - 54399 + G 70 -9.3 -3.85698 | opp_overlap 54344 54339 GGTGGATTTGTTCTC GGCCGCC GAA GGCGTCC TTTCTGCCGAAAGCG pRALTA_0049 51348 - 55019 + | hypothetical protein pRALTA_0050 55016 - 56179 + | hypothetical protein TERM 44 56336 - 56367 + F 82 -3.6 -5.12707 | gap 1, overlap 56339 56341 56341 ACACGTTGCAATCCC GTGGCCGAGCAGGCA GGT TGCCTGC-CGTATGC TTTTTTCGCATTTAG TERM 45 56649 - 56677 + G 72 -8.8 -3.96148 | gap 1 GCCGCTCGACCGTCG GTGCCC-GCTCGG CAAG CCGAGCCGGGGGC TTTATCGTGGGCCCC pRALTA_0051 56446 - 56751 + | hypothetical protein pRALTA_0052 57554 - 56799 - | putative 3-oxoacyl-[acyl-carrier-protein] reductase, Short-chain dehydrogenase pRALTA_0053 58340 - 58053 - | hypothetical protein TERM 46 59918 - 59892 - R 85 -14.5 -3.65902 | TGCAGGGCAGGTAAA GGCTCACCGTC GATGG AACGGTGAGCC AGCAATATCTTAACG pRALTA_0055 60374 - 59928 - | putative transposase, IS256 family pRALTA_0058 62341 - 60896 - | transposase fragment, IS256 family pRALTA_0057 60386 - 61396 + | transposase, IS110 family TERM 47 61595 - 61567 - GT 74 -12.5 -3.33696 | gap 1, overlap 61543 TCGCGCTGGAAGCAA GCGCG-ACCGCA GGCAAG TGCGGTACGCGC TCCGTGGCCACCAAT TERM 48 61723 - 61706 - GT 70 -7.7 -4.0098 | overlap 61707 TGGGAACGTAAAGAA CGGGATC ACCT GATCCCA GGCGCGACGCCAGGA pRALTA_0061 63557 - 63207 - | transposase IS66 Orf2 like protein pRALTA_0062 64015 - 63557 - | transposase, IS66 family pRALTA_0063 64130 - 65218 + | putative enzyme, Patatin-like domain pRALTA_0064 65464 - 65733 + | hypothetical protein; putative exported protein pRALTA_0065 65945 - 65730 - | hypothetical protein pRALTA_0066 66339 - 65977 - | conserved hypothetical protein, Calcium-binding EF-hand domain pRALTA_0067 66573 - 66358 - | hypothetical protein TERM 49 66974 - 66955 - g 78 -12.1 -3.72576 | overlap 66919 GCTTGTCGCAGCAAA GCGGCCG TCTGTT CGGCCGC CAGGCATACGTGGGC pRALTA_0068 66648 - 67811 + | putative Outer membrane porin pRALTA_0069 68644 - 68081 - | hypothetical protein pRALTA_0070 68767 - 69249 + | conserved hypothetical protein; putative exported protein pRALTA_0071 69545 - 69375 - | hypothetical protein pRALTA_0072 69615 - 70076 + | conserved hypothetical protein; DNA binding domain, excisionase family pRALTA_0073 70073 - 70651 + | hypothetical protein pRALTA_0074 70912 - 70625 - | hypothetical protein pRALTA_0075 71481 - 70909 - | conserved hypothetical protein, DUF1294; Cold shock protein domain pRALTA_0076 71702 - 72646 + | Putative endonuclease, type II restriction enzyme TERM 50 73109 - 73083 - T 85 -14.5 -3.65902 | TGCAGGGCAGGTAAA GGCTCACCGTC GATGG AACGGTGAGCC AGCAATATCTTAACG pRALTA_0078 74378 - 73119 - | transposase, IS256 family pRALTA_0080 75079 - 75852 + | 3-hydroxyacyl-CoA dehydrogenase type-2 TERM 51 77010 - 76986 - g 75 -4.9 -4.63932 | CAGCGCTTAAGAAAA CTGGCGGCC GTAGAGG GATCGCCAG CCTGTGCATTGGCGG pRALTA_0081 75860 - 77062 + | acetyl-CoA acetyltransferase TERM 52 77069 - 77102 + T 90 -19.7 -2.62263 | ATGGCTTGATCATCG GTCGTGCTGCATCTC CGAC GCGATGCAGCACGAC TGCTGTCGCAAACGT pRALTA_0082 77807 - 77121 - | putative transcriptional regulator; Crp family pRALTA_0083 78841 - 78191 - | putative transcriptional regulator, TetR TERM 53 79777 - 79765 - g 91 -5.5 -5.38951 | opp_overlap 79771, overlap 79767 AAGCCACATAAAAAA GACGC ACG ACGTC GCGACGTTTCTGATG TERM 54 80753 - 80741 - g 78 -9.1 -4.3739 | opp_overlap 80740 TATTGGGTGACAAAA GGGGT GGA ACCCC ATGATCTGATCGTTA pRALTA_0084 79166 - 80884 + | feruloyl esterase TERM 55 80949 - 80906 - T 90 -15.4 -3.72588 | gap 1, overlap 80910 80913 80915 GAATGCACAGGTAAA GCAAC-CACATTGGCCCGACG TTT CGTCGGGCCAATGCATGTCGA GGATCTGGTGGTAAT TERM 56 80944 - 80910 - T 100 -17.2 -3.55866 | overlap 80906 80913 80915 GCACAGGTAAAGCAA CCACATTGGCCCGACG TTT CGTCGGGCCAATGCAT GTCGAGGATCTGGTG TERM 57 80941 - 80913 - T 100 -23.3 -2.90283 | overlap 80910 80906 80915 CAGGTAAAGCAACCA CATTGGCCCGACG TTT CGTCGGGCCAATG CATGTCGAGGATCTG TERM 58 80939 - 80915 - T 93 -20.1 -2.99596 | overlap 80913 80910 80906 GGTAAAGCAACCACA TTGGCCCGACG TTT CGTCGGGCCAA TGCATGTCGAGGATC pRALTA_0086 83056 - 81233 - | RNA-directed DNA polymerase, retrotranscriptase TERM 59 83348 - 83362 + G 74 -11.4 -3.72576 | GACAGCGACGTCGCA GCGCTC AAT GAGCGC TTTCGTCCCGACCGG pRALTA_0087 83243 - 83569 + | transposase, Tn3 family pRALTA_0089 84347 - 85306 + | transposase, IS5 family TERM 60 85714 - 85700 - T 76 -11.4 -3.68351 | CTGCGACGATCGAAA GCGTGC ACT GCACGC TCTGGAAGCCTCCGC TERM 61 86677 - 86696 + T 83 -12.2 -4.07568 | opp_overlap 86677 CAGGCTGCTGAAGTA CTCATCGC GCTA GCGATGAG TTTTCCCCGCAAGGC pRALTA_0091 87903 - 86803 - | transposase, IS5 family TERM 62 88290 - 88303 + r 81 -3.7 -5.055 | CTGTTTCCGAAAGTT GGCTC TCTG GTGCC TTTTTTGGACATTCA TERM 63 88374 - 88352 - R 86 -5.4 -5.2189 | opp_overlap 88372 GCAATCATGAAAAAA GCGCCACGTC ATT GACGGTACGC CGCTCTGGATGCGCC pRALTA_0093 90932 - 88395 - | ATP dependent DNA ligase TERM 64 90868 - 90904 + g 70 -12.4 -3.31263 | gap 2, overlap 90869 90872 TTCTTCTCATAGCGC TCAAGCGGCGGCGATGGC TCC GTC-TCGCCGC-GCTTGG TTCTGCGCCTCGCGT TERM 65 91267 - 91287 + H 75 -3.9 -4.77157 | opp_overlap 91267, overlap 91283 GGCGGCGTCCGACAA GCCGCGT GCAACAG ACGCCGC TTTTTGCTGCATTGA pRALTA_0096 91372 - 92337 + | hypothetical protein pRALTA_0097 92396 - 92845 + | hypothetical protein pRALTA_0098 93433 - 93110 - | hypothetical protein TERM 66 93591 - 93561 - R 75 -3.9 -4.72272 | gap 2, overlap 93562 93563 CGTTGTCAGCAAAAA TTC-CGGCTGGC-CG TAT CGAGCCGGCCGAGCA TCGACGAGAGATCCA dnaE3 96703 - 93551 - | Error-prone DNA polymerase TERM 67 94685 - 94661 - G 74 -13.5 -3.28712 | TTCCCCGGCCGAGAA GCCGGCGGCCA GCA TGGCCACCTGC ATCACCTGCTCCTGG TERM 68 94721 - 94732 + g 81 -7.2 -4.65895 | opp_overlap 94705, overlap 94700 CGGCACGCCGAGCGT GCGC GACA GCGC TTTTTCCATCGCGGC pRALTA_0100 98175 - 96709 - | putative DNA polymerase, Y family TERM 69 97570 - 97549 - GR 70 -12.3 -3.18582 | gap 1, overlap 97553 CAGGGCATCCAGGAA GTCAGCGCCG CAG CGGCGCTG-C AGACCGGCGCGAGGC pRALTA_0101 98806 - 98099 - | conserved hypothetical protein; putative DNA recombinase; putative partial gene TERM 70 99004 - 99029 + r 85 -5.9 -4.99134 | opp_overlap 99004, overlap 98998 CCATTTATTTGAAAA GCCGCGCTCCC AACA GGGTTCGCCGC TTTTTGCTTTCGACT pRALTA_0103 99752 - 99555 - | hypothetical protein pRALTA_0106 101171 - 101016 - | hypothetical protein TERM 71 102246 - 102235 - g 72 -3.6 -4.57341 | AACGCCCGCCAAAAA GGCC GCGC AGCC CCAGTCAGGCAACGA pRALTA_0107 101675 - 102484 + | hypothetical protein TERM 72 103366 - 103355 - g 78 -5.8 -4.58283 | opp_overlap 103357, overlap 103357 GAATTTCCGGAAAAA GAGC GCGA GCTC TGGCGCATCTTTGAC pRALTA_0109 102905 - 104371 + | conserved hypothetical protein; putative DNA interacting protein (helicase/transcriptional regulator) pRALTA_0110 104937 - 105215 + | hypothetical protein pRALTA_0111 105634 - 105284 - | hypothetical protein pRALTA_0112 105996 - 105631 - | hypothetical protein TERM 73 106044 - 106032 - H 83 -4.7 -5.06735 | overlap 106033 GATAAAGTAGAAAAA GCGGG GTT CCCGA TCTAGCCGGCGCGTC pRALTA_0113 106505 - 106816 + | hypothetical protein TERM 74 108481 - 108465 - T 72 -7.9 -4.14739 | overlap 108449 108469 108479 CGATCGACCTGAAAA CCGATCG CAA CGAACGG CTGCGCCTACGGGCG pRALTA_0115 109859 - 109008 - | hypothetical protein TERM 75 110072 - 110046 - R 73 -10.8 -3.55815 | overlap 110047 AAACATGTTGGCAAA TCGGCGACCTTT TCC AACGGTCGCCGC CTCCCAAGCCCCCCC TERM 76 110071 - 110047 - R 75 -14.3 -2.73007 | overlap 110046 AACATGTTGGCAAAT CGGCGACCTTT TCC AACGGTCGCCG CCTCCCAAGCCCCCC pRALTA_0117 110701 - 110249 - | hypothetical protein pRALTA_0118 111837 - 110698 - | conserved hypothetical protein. putative ubiquitin-activating enzyme (E1) like TERM 77 111429 - 111408 - G 76 -2.2 -4.70659 | gap 1, overlap 111409 111412 TCGGATAGTGAAAAA CCGACGCCG TGTCC CGGCGT-GT AAAGCTACCCCTCCC pRALTA_0119 112081 - 111845 - | hypothetical protein pRALTA_0120 112437 - 112252 - | hypothetical protein pRALTA_0122 112657 - 112466 - | hypothetical protein pRALTA_0123 112884 - 113246 + | putative transcriptional regulator, XRE family pRALTA_0124 113246 - 114124 + | conserved hypothetical protein, DUF955 TERM 78 114200 - 114150 - f 100 -22.9 -3.06915 | opp_overlap 114164 ATGCAGCCTAGCGAA TTTTTATCGATATAGTGGGCGGC GTTTA GCCGCCCACTATATCGATAAACG GGAAGGACGTATGCT TERM 79 114164 - 114186 + F 83 -16.3 -2.91264 | opp_overlap 114150 ATTTTTATCGATATA GTGGGCGGC GTTTA GCCGCCCAC TATATCGATAAACGG pRALTA_0125 114211 - 114471 + | hypothetical protein pRALTA_0127 114642 - 114950 + | hypothetical protein pRALTA_0129 115161 - 115475 + | hypothetical protein pRALTA_0130 116546 - 115698 - | hypothetical protein TERM 80 116515 - 116474 - G 76 -2.7 -4.67982 | overlap 116469 CCGGACGGAAGAAAA CGGTCGCCCACTCTCCAGT AAAG ACTGGCTCGCGTACGGCCG CTGTTCGCGAAAGAA pRALTA_0131 117373 - 116546 - | hypothetical protein TERM 81 117297 - 117283 - G 79 -2.8 -4.82901 | overlap 117269 CGCGCCCCACAAAAA CAGG TTGAGCG CCTG TCGCGTGGACAGCAT pRALTA_0133 117806 - 117615 - | hypothetical protein pRALTA_0134 118047 - 117829 - | hypothetical protein pRALTA_0135 118142 - 119548 + | hypothetical protein pRALTA_0136 119603 - 119965 + | putative transposase pRALTA_0137 119965 - 120312 + | transposase, IS6 orf2 (TnpB) family TERM 82 121184 - 121220 + G 71 -9.9 -3.70902 | GTATGTGCGTGACGA CCGGACGTCGGGCGATG CTA CTCCGCCGGCCGTCTGG TTTGCCTATACGCCG pRALTA_0138 120342 - 121661 + | transposase, IS6 family pRALTA_0139 122718 - 121726 - | Cointegrate resolution protein T pRALTA_0140 123135 - 124493 + | putative integrase/recombinase pRALTA_0141 127450 - 124526 - | transposase, Tn3 family TERM 83 124919 - 124899 - G 81 -2.5 -5.00884 | overlap 124900 ATGTTGCTGAAAAAA TCGCACA AGAAGAG TGTGCGC AGCATCTTGCCCAGA pRALTA_0143 127940 - 128305 + | hypothetical protein TERM 84 128654 - 128681 + G 76 -7.6 -4.33274 | gap 1 GAATCGTACCGGGCA CAC-GTGCGCAGC GAT GCGGCGCCCCGTG TTTTGATCCTATCCG pRALTA_0144 128489 - 129256 + | hypothetical protein pRALTA_0145 129253 - 129585 + | hypothetical protein TERM 85 129855 - 129841 - f 77 -4.3 -4.88405 | AACTGTGAAACAAAA CTCAA CAACT TTGAG ACGTGACACTGGCAG pRALTA_0147 129906 - 130853 + | integrase/recombinase pRALTA_0148 130886 - 131173 + | hypothetical protein TERM 86 131368 - 131356 - g 75 -4.7 -4.56597 | TGCCCCGGCCAAAAA GGCCG CTC CTGCC AAAAAGGCTGCCGCT TERM 87 131389 - 131374 - g 78 -6 -4.56597 | CGCTCCTGCCAAAAA GGCTGC CGCT GCCGCC CCGGTAGCCAAGCCG pRALTA_0149 131282 - 131713 + | putative Histone-like DNA-binding protein TERM 88 131782 - 131724 - T 100 -21.3 -4.11484 | gap 1, opp_overlap 131740, overlap 131740 CTTAATCGCCTAAAA GGCGTCA-ACGGGAAAAGGCCCGACATC CGAA GATGTCGGGCCTTTTCCCATGTAAAGAC AACAACTAACATGAA TERM 89 131765 - 131740 - T 100 -19.1 -4.19238 | opp_overlap 131740, overlap 131724 GCGTCAACGGGAAAA GGCCCGACATC CGAA GATGTCGGGCC TTTTCCCATGTAAAG TERM 90 131740 - 131765 + T 100 -19.1 -4.16943 | opp_overlap 131724 131740 GCGTCAACGGGAAAA GGCCCGACATC CGAA GATGTCGGGCC TTTTCCCATGTAAAG pRALTA_0150 132057 - 131857 - | hypothetical protein TERM 91 132017 - 132027 + g 79 -4.6 -4.74103 | AAGATTGAGTCATTG TCGG ATT CCGG TTTTTCGCTTACAGG pRALTA_0151 133086 - 132568 - | hypothetical protein TERM 92 133152 - 133136 - R 83 -9.4 -4.35339 | ATAGGAAGCAATAAA CCCTCG ATGAG CGAGGG CGGCATGTGCGTGCA pRALTA_0152 133402 - 133172 - | hypothetical protein TERM 93 133438 - 133400 - G 73 -9.7 -3.91144 | gap 1, overlap 133402 133423 GCGAGAGTGGATAAA CATGGACA-GGCTCCG GAAATGGA CGGAGCCTTGCCCATA GGGAAGGCCCCTATG pRALTA_0153 134056 - 133571 - | hypothetical protein TERM 94 133610 - 133645 + g 72 -8.3 -4.06904 | gap 1, opp_overlap 133612 133619 133628 CATGGCGACCTCACA GAGGACATAG-CGCGA GAACA TCGCGTCGAAGTCCTC TTTCTGCTTGCCTGA TERM 95 133690 - 133667 - G 81 -3.7 -4.82901 | opp_overlap 133671, overlap 133669 133671 133672 CTTGCCTGAGAAAAA GACACCGGC CACGTC GCCGTGGTC GATCTTCAGGCGCAG TERM 96 134128 - 134100 - R 100 -10.2 -5.38951 | overlap 134101 AAGTCATAGAAAAAA GGCCCGCACCCC TTTCG GGAATGCGGGCA TGATCAGAAAGGAAC TERM 97 134127 - 134101 - R 84 -13.7 -3.81744 | overlap 134100 AGTCATAGAAAAAAG GCCCGCACCCC TTTCG GGAATGCGGGC ATGATCAGAAAGGAA pRALTA_0154 136477 - 134156 - | putative ATPase pRALTA_0155 136995 - 136465 - | hypothetical protein TERM 98 137143 - 137107 - R 71 -10.8 -3.53444 | opp_overlap 137106 137110 GGACGCGGGGTGAAA CCGGGTTTCGACTGCC ACAAA GGCAGTCGGAACATGG CTTGCATGCTCAAGG pRALTA_0156 138599 - 137172 - | putative DNA exonuclease TERM 99 138377 - 138362 - G 78 -8.2 -4.30576 | overlap 138363 CTTGTAGCATCAAAA CCGGGC AGTA GCCCGA GAGCCGATGGATGCG pRALTA_0157 140107 - 138710 - | Retron-type reverse transcriptase, RNA-directed DNA polymerase TERM 100 140321 - 140332 + r 86 -7.2 -4.77157 | TTCCGTGCAAGTACT GGGC TTTG GCCC TTTTTGCTGCCTTAC TERM 101 140516 - 140497 - R 74 -15 -2.53263 | TTCACCCTCAAGTGA GTGCGCCC TGCC GGGCGCAC AAAAAGAAAATGCCC TERM 102 140547 - 140527 - R 100 -16.9 -5.35224 | CGCACAAAAAGAAAA TGCCCCGTC GTC GACGGGGCA GGAGAAGGTGCCAAG pRALTA_0158 141325 - 140618 - | hypothetical protein pRALTA_0159 142118 - 141327 - | hypothetical protein TERM 103 142168 - 142138 - R 73 -13.2 -3.23853 | opp_overlap 142148, overlap 142136 142139 GTCTCTCAAGGAATA TGGGAGACCGCCCC GTC GGGATGGTCTCCCG AGGGAATGAATCGGT TERM 104 142167 - 142139 - R 79 -16.7 -2.54098 | opp_overlap 142148, overlap 142138 142136 TCTCTCAAGGAATAT GGGAGACCGCCCC GTC GGGATGGTCTCCC GAGGGAATGAATCGG pRALTA_0160 142439 - 142206 - | hypothetical protein pRALTA_0161 142936 - 142451 - | hypothetical protein TERM 105 142984 - 142954 - R 95 -16.8 -3.87815 | opp_overlap 142946 142965, overlap 142937 142936 142955 CGTTACCTCGAGAAA GTGGGAACGCCCCC ACC GGGGGCGTTCCCGA TGGGTGATTGAGTCC TERM 106 142983 - 142955 - R 93 -20.3 -2.92475 | opp_overlap 142946 142965, overlap 142937 142936 142954 GTTACCTCGAGAAAG TGGGAACGCCCCC ACC GGGGGCGTTCCCG ATGGGTGATTGAGTC pRALTA_0162 143427 - 143050 - | hypothetical protein pRALTA_0163 143717 - 143508 - | putative lipoprotein pRALTA_0164 144395 - 143871 - | hypothetical protein pRALTA_0165 144467 - 145000 + | hypothetical protein pRALTA_0168 146471 - 147685 + | hypothetical protein pRALTA_0169 147682 - 148062 + | hypothetical protein pRALTA_0170 148095 - 148466 + | hypothetical protein pRALTA_0171 148463 - 149584 + | Phage Gp37Gp68 pRALTA_0172 149581 - 150825 + | putative DNA methyltransferase, Modification methylase pRALTA_0173 150828 - 151034 + | hypothetical protein pRALTA_0174 151137 - 151754 + | hypothetical protein pRALTA_0175 151818 - 152240 + | DNA endonuclease; putative precursor/ putative exported protein pRALTA_0176 152233 - 152709 + | putative endonuclease TERM 107 152782 - 152749 - T 100 -12.5 -4.56597 | opp_overlap 152751 152752 152756, overlap 152732 152751 152752 152756 TGTTCCTTCCAAAAA CATGAAAGGCACGTC TTTG GACGTGCCTTTCGTT CTGTGAGGGCCATCA TERM 108 152751 - 152780 + T 93 -17.3 -3.48395 | opp_overlap 152732 152749 152751 152752 152756, overlap 152752 152756 TTCCTTCCAAAAACA TGAAAGGCACGTC TTTG GACGTGCCTTTCG TTCTGTGAGGGCCAT TERM 109 152780 - 152751 - T 91 -15.1 -3.90048 | opp_overlap 152751 152752 152756, overlap 152732 152749 152752 152756 TTCCTTCCAAAAACA TGAAAGGCACGTC TTTG GACGTGCCTTTCG TTCTGTGAGGGCCAT TERM 110 152779 - 152752 - T 91 -18.6 -2.93708 | opp_overlap 152751 152752 152756, overlap 152751 152749 152756 TCCTTCCAAAAACAT GAAAGGCACGTC TTTG GACGTGCCTTTC GTTCTGTGAGGGCCA TERM 111 152752 - 152779 + T 87 -18.6 -2.68823 | opp_overlap 152752 152751 152749 152756, overlap 152751 152756 TCCTTCCAAAAACAT GAAAGGCACGTC TTTG GACGTGCCTTTC GTTCTGTGAGGGCCA TERM 112 152756 - 152775 + T 90 -13.6 -4.04174 | opp_overlap 152752 152751 152749 152756, overlap 152752 152751 TCCAAAAACATGAAA GGCACGTC TTTG GACGTGCC TTTCGTTCTGTGAGG TERM 113 152775 - 152756 - T 93 -13.6 -4.13748 | opp_overlap 152756 152752 152751, overlap 152752 152751 152749 TCCAAAAACATGAAA GGCACGTC TTTG GACGTGCC TTTCGTTCTGTGAGG hupB3 153542 - 153264 - | HU, DNA-binding transcriptional regulator, beta subunit pRALTA_0179 154905 - 153748 - | putative topoisomerase/recombinase/integrase TERM 114 154944 - 154967 + H 70 -8 -4.09243 | opp_overlap 154936 GATATCACCACGGCG GGGGCGCGCT TTAC GGTGCGACCC TTTTCCAACACTGTC TERM 115 155574 - 155555 - H 100 -4.9 -5.47218 | overlap 155556 TTTGATTGAAAAAAA TGCCGGA TCAATT TCCGGCC TGCACACTGGGCGTC TERM 116 155573 - 155556 - H 71 -8.4 -3.87608 | overlap 155555 TTGATTGAAAAAAAT GCCGGA TCAATT TCCGGC CTGCACACTGGGCGT pRALTA_0183 155967 - 156968 + | putative plasmid stability protein, Actin-like ATPase domain TERM 117 157140 - 157124 - g 83 -12.3 -3.96483 | ATGGGAGCGAAAGAA GGCGTTG CGG CAACGCC GGCGCCTGCAGGTGC pRALTA_0184 156974 - 157375 + | hypothetical protein pRALTA_0185 157372 - 157581 + | hypothetical protein TERM 118 157628 - 157609 - T 100 -13.6 -5.42514 | opp_overlap 157609 CCAGAAAGCAAAAAA GCCCAGCA TGTC TGCTGGGC TTTTTGTTGAAGAGG TERM 119 157609 - 157628 + T 100 -13.6 -5.06414 | opp_overlap 157609 CCAGAAAGCAAAAAA GCCCAGCA TGTC TGCTGGGC TTTTTGTTGAAGAGG pRALTA_0186 157865 - 157653 - | hypothetical protein TERM 120 157958 - 157940 - R 74 -11.7 -3.53745 | overlap 157937 CAGAGTTGAAAGGAA CGCCACC ATTCG GGTGGCG AAAATGTCAGGCAGC pRALTA_0187 159047 - 157965 - | putative DNA primase TERM 121 158611 - 158652 + g 91 -14.6 -3.85698 | gap 2, opp_overlap 158604, overlap 158615 GCGAGATAGCGCATG GCATGGTCACCAGCCGCGAC CGGA GTCGAG-CTGGTGACC-TGC TTTATGACGCGGCGC TERM 122 158615 - 158649 + g 74 -15.1 -3.00946 | gap 1, opp_overlap 158604, overlap 158611 GATAGCGCATGGCAT GGTCACCAGCCGCGAC CGGA GTCGAG-CTGGTGACC TGCTTTATGACGCGG TERM 123 158702 - 158675 - G 72 -6.8 -4.25104 | opp_overlap 158664 CGCGGCGCATCAAAA CGGAAGCGCTTC CCTT GCTGCGCTGCCG GCATGCCGGCCTGAT TERM 124 159155 - 159097 - R 77 -13.4 -3.37053 | opp_overlap 159110, overlap 159109 AGACAGGCGAAGGAA CGCT-TGCTCAAAGGACATCCCGGCTGC GTGAG GC-GCCAGAATGTCTTTTCAGCACAGCG ATTGGATCGGGGGGG TERM 125 159239 - 159199 - R 75 -13.4 -3.09492 | gap 1, opp_overlap 159191, overlap 159202 GCGCGAAGCCGAAGA TGAGGTGCATGCTCCCGCG GATT CGCGGGAGCATGCATAT-A GCTGCCACTTATGGC TERM 126 159237 - 159202 - R 84 -17.6 -2.76046 | opp_overlap 159191, overlap 159199 CGAAGCCGAAGATGA GGTGCATGCTCCCGCG GATT CGCGGGAGCATGCATA TAGCTGCCACTTATG ssb2 159767 - 159258 - | Single-stranded DNA-binding protein pRALTA_0189 160574 - 159780 - | hypothetical protein pRALTA_0190 161012 - 160584 - | hypothetical protein pRALTA_0191 161418 - 161110 - | conserved hypothetical protein; putative exported protein TERM 127 161710 - 161724 + H 83 -12.8 -3.8698 | opp_overlap 161710 GGGAAAGCATGACAA GCGCCG CCC CGGCGC TTTCGATTTGCCTTC TERM 128 161724 - 161710 - H 76 -12.8 -3.49924 | opp_overlap 161710 GGGAAAGCATGACAA GCGCCG CCC CGGCGC TTTCGATTTGCCTTC pRALTA_0192 162099 - 163262 + | hypothetical protein pRALTA_0193 163264 - 164436 + | hypothetical protein TERM 129 164561 - 164589 + T 100 -10.2 -5.65513 | opp_overlap 164563, overlap 164563 TCTCGGCCTTCTCAA TACGGCGGCTTC CTCTT GGGGCCGCCGTC TTTTTTTGGTTCATC TERM 130 164563 - 164587 + T 100 -12.8 -4.45473 | opp_overlap 164563, overlap 164561 TCGGCCTTCTCAATA CGGCGGCTTC CTCTT GGGGCCGCCG TCTTTTTTTGGTTCA pRALTA_0195 165820 - 164600 - | transposase, ISL3 family TERM 131 165596 - 165580 - G 74 -11.5 -3.73072 | AACGGTCGCACCAAA CGCGCCG GCG CGGCACG TGCAGTACGACCCGA TERM 132 167083 - 167104 + G 72 -5.7 -4.34402 | opp_overlap 167068 167069, overlap 167084 CTCGTTGACGGCAAC GGCGCGGAG CTGC CTGCGCGCG TTTTGGTGTCCCCGG TERM 133 167211 - 167229 + G 76 -8.1 -4.38712 | GCCACTGGCGGACCG CGAGGCC TACAC GGCTTCG TTTTCTGGCACTCGG pRALTA_0196 166261 - 167313 + | conserved hypothetical protein; putative exported protein; related to plant pathogenesis proteins, PR-1 family pRALTA_0197 167942 - 168970 + | conserved hypothetical protein; putative exported protein; related to plant pathogenesis proteins, PR-1 family TERM 134 169023 - 168994 - T 100 -17.3 -4.57569 | opp_overlap 168994 168998 169001, overlap 168998 TTACCCCTCTAAAAA CAAAGAACCCCGC AACG ACGGGGTTCTTTG TCTGTTCAGCCCTGG TERM 135 168994 - 169023 + T 84 -16.6 -3.07344 | opp_overlap 168994 168998, overlap 168998 169001 TTACCCCTCTAAAAA CAAAGAACCCCG CAACGA CGGGGTTCTTTG TCTGTTCAGCCCTGG TERM 136 169019 - 168998 - T 100 -12.3 -4.85782 | opp_overlap 168994 168998 169001, overlap 168994 CCCTCTAAAAACAAA GAACCCCGC AACG ACGGGGTTC TTTGTCTGTTCAGCC TERM 137 168998 - 169019 + T 86 -11.6 -4.2074 | opp_overlap 168998 168994, overlap 168994 169001 CCCTCTAAAAACAAA GAACCCCG CAACGA CGGGGTTC TTTGTCTGTTCAGCC TERM 138 169001 - 169016 + T 72 -7.5 -4.21954 | opp_overlap 168998 168994, overlap 168998 168994 TCTAAAAACAAAGAA CCCCG CAACGA CGGGG TTCTTTGTCTGTTCA pRALTA_0198 169546 - 169043 - | hypothetical protein pRALTA_0200 170809 - 169562 - | putative type IV prepilin; putative adhesin (pilV homolog) pRALTA_0201 171296 - 170817 - | conserved hypothetical protein; putative exported protein pRALTA_0202 171833 - 171333 - | putative prepilin type IV pili (pilS homolog) pRALTA_0203 172432 - 171932 - | putative prepilin type IV pili (pilS homolog) pRALTA_0204 173506 - 172466 - | putative type IV secretion apparatus component (pilR homolog) pRALTA_0205 175308 - 173503 - | putative type IV secretion apparatus, ATPase component (pilQ homolog) pRALTA_0206 176546 - 175305 - | Putative type IV pilus biosynthesis protein; putative pilO homolog; putative precursor pRALTA_0207 177224 - 176550 - | conserved hypothetical protein; putative exported protein pRALTA_0209 178910 - 177240 - | type IV secretion pathway, outer membrane lipoprotein, putative precursor (pilN homolog) TERM 139 178749 - 178806 + g 74 -12.6 -3.551 | gap 2, opp_overlap 178751, overlap 178762 CTCATGCACCCGGAA CACCGGGCGGCTGCGAGGCGCATCGGCG TATG CGGCG-TGCGCCTCGTTGCCGAT-GGCG TTCTGTACGTTGCGC pRALTA_0210 179407 - 178907 - | conserved hypothetical protein; putative pilus-related protein (bfpG homolog); putative membrane protein TERM 140 179186 - 179149 - G 70 -12.7 -3.28712 | gap 1, opp_overlap 179158 CCTCCCCTTTGACAA GCCGGAACACGGCCCCGG CCG CCGGCGCGATGTTC-GGC ACGGCCGGCGTGCTG pRALTA_0212 179873 - 179436 - | putative Lytic transglycosylase, Invasion protein (pilT homolog) pRALTA_0213 181147 - 179870 - | conserved hypothetical protein; putative PilL-like protein; putative exported protein trbN 181947 - 181144 - | type IV secretory pathway, putative lytic transglycosylase; putative exported protein trbI 183163 - 181940 - | type IV secretion system, conjugation efficiency factor TERM 141 182699 - 182715 + g 77 -11.5 -3.95986 | CGTGACATCGGCCAT GCCGGGC GGC GTCCGGC TTTGATTCAGTTGCG TERM 142 182821 - 182853 + g 78 -8.9 -4.34402 | GGCTGGCCTTCGCCC CGCCGCCCAGGTCCG ATG CGGTCATGACCGGCG TTTTCGTGTCAGGGG trbG 184089 - 183178 - | type IV secretion system, conjugation protein trbF 184812 - 184105 - | type IV secretory pathway, conjugal transfert protein (putative precursor) trbB 185167 - 186216 + | type IV secretory pathway, conjugal transfert protein; putative chaperonin pRALTA_0219 186235 - 186582 + | conserved hypothetical protein; putative trbC/virB2 homolog trbD 186584 - 186913 + | type IV secretory pathway, conjugal transfert protein trbE 186907 - 189363 + | Type IV secretory pathway, Conjugal transfer protein, putative ATPase trbJ 189379 - 190137 + | Type IV secretory pathway, entry exclusion protein A (putative protein precursor) trbL 190148 - 191203 + | Type IV secretory pathway, conjugal transfert protein, putative permease traI 191200 - 192438 + | type IV secretory pathway, putative Conjugative relaxase TERM 143 193371 - 193382 + G 81 -7.2 -4.65895 | overlap 193361 193360 AATTTGCTCGAGCGA GCGC TGGA GCGC TTTTTCCCTGAGGCC traG 192435 - 194300 + | type IV secretory pathway, conjugative coupling factor protein (putative protein precursor), putative channel-forming protein, putative ATPase TERM 144 194511 - 194469 - g 73 -10.6 -3.90112 | gap 1, overlap 194424 CGCTGGTCAAGGAAA TGCTTGCCGACGGCATCAC GGCGTG GCG-CGCCGCCCGCAAGCA CGGCGATCCCAACGT pRALTA_0226 194306 - 194812 + | hypothetical protein pRALTA_0227 194802 - 195083 + | hypothetical protein pRALTA_0228 195085 - 195702 + | hypothetical protein TERM 145 195739 - 195725 - f 73 -12.8 -3.25015 | opp_overlap 195722 CGTAACGACTACCAA GGCCGG TGC CCGGCC ACATATTGGAGAACA pRALTA_0229 195757 - 196608 + | hypothetical protein TERM 146 198117 - 198129 + G 79 -4.8 -4.69053 | overlap 198106 CGAGTGGCGAACGCT CTGC GACCG GCAG TTTTATTCGCTGGTG pRALTA_0230 196798 - 198537 + | putative ATP-dependent DNA helicase TERM 147 198824 - 198843 + T 100 -12.2 -4.56597 | opp_overlap 198824 CAGGCTGCTGAAGTA CTCATCGC GCTA GCGATGAG TTTTTCCCCGCAAGG pRALTA_0231 200051 - 198951 - | transposase, IS5 family pRALTA_0232 200612 - 200779 + | putative integral membrane protein pRALTA_0233 201082 - 200831 - | hypothetical protein pRALTA_0234 201085 - 202344 + | transposase, IS256 family TERM 148 202354 - 202380 + T 85 -14.5 -3.65902 | CGTTAAGATATTGCT GGCTCACCGTT CCATC GACGGTGAGCC TTTACCTGCCCTGCA TERM 149 202427 - 202406 - T 95 -2.9 -5.71712 | gap 1, overlap 202410 CTGCACACAAAAAAA CTGACAGGCC CAA GGCCCGG-AG GTTCCGGGATAACCT pRALTA_0235 204129 - 202825 - | transposase, IS4 family pRALTA_0236 204516 - 204229 - | hypothetical protein pRALTA_0238 206272 - 204830 - | Outer membrane efflux protein precursor TERM 150 205534 - 205577 + g 74 -11.6 -3.73224 | gap 1, overlap 205535 TCATGTCAGCAGCGA GCGTGCCAACGGCGGTTTGCC ACT GGCCGTCCGCC-TTGGCGCGG TTTAGTACCGCCTGC TERM 151 205535 - 205576 + g 72 -15.1 -2.8372 | gap 1, overlap 205534 CATGTCAGCAGCGAG CGTGCCAACGGCGGTTTGCC ACT GGCCGTCCGCC-TTGGCGCG GTTTAGTACCGCCTG TERM 152 205629 - 205639 + g 70 -8.2 -3.85698 | AAGGCATCCGAGATG GGCG CCA CGCC TTTGTCCACCCGCCC pRALTA_0239 207692 - 206262 - | Type I secretion system membrane fusion protein pRALTA_0240 209821 - 207689 - | type I secretion system ATP-binding component TERM 153 209902 - 209879 - R 100 -13.8 -4.88388 | opp_overlap 209880, overlap 209880 ACAAGCGTAGAAAAA CCGGCGCCCT CGCA AGGGCGCCGT CTGCTACCGTCGGGG TERM 154 209880 - 209901 + r 84 -17.3 -2.79796 | opp_overlap 209879 209880 CAAGCGTAGAAAAAC CGGCGCCCT CGCA AGGGCGCCG TCTGCTACCGTCGGG TERM 155 209901 - 209880 - R 93 -17.3 -3.51948 | opp_overlap 209880, overlap 209879 CAAGCGTAGAAAAAC CGGCGCCCT CGCA AGGGCGCCG TCTGCTACCGTCGGG pRALTA_0241 211364 - 209925 - | conserved hypothetical protein, putative hemolysin TERM 156 210024 - 210038 + g 71 -2.8 -4.56775 | overlap 210019 210018 GGCCATTGCCTGAAT CAACTG ATT CACTTG TTTTTGGGCGAAGGT TERM 157 211265 - 211281 + g 73 -9.5 -3.92373 | opp_overlap 211268, overlap 211268 CCAATAGCTGGGACA CAAGAGT TGG ACTCTTG TTTATAAGTGCAATC TERM 158 211364 - 211377 + g 71 -2.4 -4.55826 | TCTGATTACTTGTCA TGGT AACTCA ACCA TTTTCCTGTTTTGAA pRALTA_0242 212119 - 211361 - | hypothetical protein pRALTA_0244 213667 - 212123 - | transposase, IS5 family TERM 159 212340 - 212315 - G 100 -3.1 -5.94597 | gap 1, opp_overlap 212327, overlap 212318 212319 CAAGACGAAAAAAAA GAACGCCCGCGG ATG CC-CAGGCGGGC AATTGCTCGCGGCAG TERM 160 212337 - 212318 - G 90 -7.8 -4.99643 | gap 1, opp_overlap 212327, overlap 212315 212319 GACGAAAAAAAAGAA CGCCCGCGG ATG CC-CAGGCG GGCAATTGCTCGCGG TERM 161 214297 - 214276 - g 71 -10.1 -3.72324 | GAGTTCGACCAAGAA TGGGTCGGG CGAA CGCGACCCA GAGATGCACCAGAGC insH 213821 - 214783 + | transposase, IS5 family pRALTA_0246 215960 - 214944 - | putative transcriptional regulator, LysR family pRALTA_0247 216215 - 216667 + | transposase, IS3 family TERM 162 216968 - 216981 + G 71 -2.3 -4.5477 | overlap 216969 GCGGCCAGTACGTGG CCTCG GAGT CGAGC TTTTATCGTGTCTTG pRALTA_0248 216664 - 217611 + | transposase, IS3 family TERM 163 217862 - 217881 + T 100 -12.2 -4.56597 | opp_overlap 217862 CAGGCTGCTGAAGTA CTCATCGC GCTA GCGATGAG TTTTTCCCCGCAAGG pRALTA_0249 219089 - 217989 - | transposase, IS5 family TERM 164 219432 - 219452 + H 100 -14 -5.45726 | overlap 219449 219451 ATGCGTCCTTTATAG CGCCCGAC TTCCC GTCGGGCG TTTTTTTAACGTCTG pRALTA_0250 219686 - 220468 + | Putative glycosyl hydrolase; putative exported protein TERM 165 220804 - 220767 - f 80 -14.8 -3.21695 | gap 1 CGAGCAGGAAGGCAA GCTCGGCG-GGGCCGGC ACGAA GCCGGTCCGCGCGGAGC AGATGGAATTGTCGA TERM 166 220880 - 220913 + GF 91 -11.7 -4.36914 | opp_overlap 220875 CTAAAAAAGGCGTGC GCGTACTTCGCGAAG GACT CGACGTGAAGTACGC TTTTATCGAACGCAA pRALTA_0252 220807 - 221331 + | hypothetical protein pRALTA_0253 221156 - 221485 + | hypothetical protein pRALTA_0256 222906 - 222076 - | Integrase pRALTA_0257 223214 - 222903 - | transposase, IS3 family pRALTA_0258 223505 - 223239 - | transposase fragment pRALTA_0259 224877 - 223573 - | transposase, IS4 family pRALTA_0261 225295 - 225546 + | conserved hypothetical protein; putative small integral membrane protein TERM 167 225615 - 225630 + T 77 -2.4 -5.055 | opp_overlap 225602 AAGGCTTTGCCAACG CCGGGC TGAC GCTAGG TTTTTTGAACATTGC pRALTA_0263 225972 - 225736 - | hypothetical protein pRALTA_0264 227174 - 226212 - | transposase, IS5 family TERM 168 226698 - 226719 + g 71 -10.1 -3.72324 | GCTCTGGTGCATCTC TGGGTCGCG TTCG CCCGACCCA TTCTTGGTCGAACTC pRALTA_0265 227399 - 227911 + | putative Adenylylsulfate kinase pRALTA_0268 230718 - 230263 - | transposase, IS66 family pRALTA_0267 229217 - 230317 + | transposase, IS5 family pRALTA_0269 231076 - 230726 - | transposase IS66 Orf2 like protein pRALTA_0271 231748 - 233076 + | transposase, IS4 family pRALTA_0272 233092 - 233319 + | hypothetical protein pRALTA_0273 234336 - 233401 - | Co/Zn/Cd cation efflux system component TERM 169 234436 - 234419 - R 81 -2.5 -5.14563 | overlap 234421 GTGGTGACGAAAAAA GTCCTGC ATTG GCTGGGC TACACCTCTGCTTTT pRALTA_0275 235023 - 234721 - | conserved hypothetical protein, putative partial pRALTA_0276 235306 - 236610 + | transposase, IS4 family TERM 170 237217 - 237236 + T 100 -12.2 -4.56597 | opp_overlap 237217 CAGGCTGCTGAAGTA CTCATCGC GCTA GCGATGAG TTTTTCCCCGCAAGG pRALTA_0278 238444 - 237344 - | transposase, IS5 family pRALTA_0279 238694 - 238578 - | transposase (fragment) TERM 171 238806 - 238835 + r 71 -11.4 -3.53031 | gap 1, overlap 238803 CCACCTGGCTCCCGT CAGCC-AGCCGCC TTGGC GGCGGCTCGGCCG TTCGTTTGACCTGCC pRALTA_0280 239536 - 238805 - | transposase, IS21 family pRALTA_0281 240489 - 239590 - | transposase, IS21 family (istA-like) pRALTA_0282 240619 - 240452 - | hypothetical protein pRALTA_0283 240811 - 240665 - | transposase (fragment) pRALTA_0284 241106 - 240954 - | transposase (fragment) pRALTA_0286 241199 - 241125 - | transposase (fragment) TERM 172 241213 - 241233 + H 76 -6.7 -4.4017 | ATTTGGGGGTTGGGC CCCCAAGCG TTA CGCATGTGG TTTTCTCCGCCTTAC pRALTA_0287 241582 - 242691 + | conserved hypothetical protein; putative Periplasmic sugar-binding domain protein pRALTA_0288 242691 - 244517 + | putative multi-sensor signal transduction histidine kinase pRALTA_0289 245675 - 244713 - | transposase, IS4 family TERM 173 245199 - 245220 + g 71 -10.1 -3.72324 | GCTCTGGTGCATCTC TGGGTCGCG TTCG CCCGACCCA TTCTTGGTCGAACTC pRALTA_0290 246385 - 245753 - | RESPONSE REGULATOR, LuxR family, similar to vsrD TERM 174 247932 - 247943 + G 72 -5.8 -4.36914 | ACTGCTGTTTCCGTT TGCC GGCC GGCA TTTTGTCAAGGGCAA pRALTA_0291 247729 - 248679 + | putative Aldose 1-epimerase/Galactose mutarotase TERM 175 248984 - 248996 + F 87 -6.2 -5.14965 | GTGCAGGGCTGCTTA CCGC AATAG GCGG TTTTTTCATGGGCCT TERM 176 250051 - 250023 - f 70 -10.1 -3.63569 | opp_overlap 250027, overlap 250024 250027 TCAACGCTCGAAGAA GCGAGGGCTGGCC TGC GGCCCGCCCTCTT CGGCGCCGTAGCCAG TERM 177 250050 - 250024 - f 72 -13.6 -2.7782 | opp_overlap 250027, overlap 250023 250027 CAACGCTCGAAGAAG CGAGGGCTGGCC TGC GGCCCGCCCTCT TCGGCGCCGTAGCCA TERM 178 250027 - 250047 + F 75 -13.9 -3.02144 | opp_overlap 250027 250024 250023 CGCTCGAAGAAGCGA GGGCTGGCC TGC GGCCCGCCC TCTTCGGCGCCGTAG TERM 179 250047 - 250027 - f 71 -13.9 -2.6563 | opp_overlap 250027, overlap 250024 250023 CGCTCGAAGAAGCGA GGGCTGGCC TGC GGCCCGCCC TCTTCGGCGCCGTAG TERM 180 250400 - 250431 + F 78 -14.5 -3.05384 | gap 1 GAGCGCTGGCGGAGC GCCG-CGTCCGCGA TACGC TTGCGGACGGCGGC TTGCATGCGCCGACG pRALTA_0296 250720 - 252216 + | transposase, IS21 family pRALTA_0297 252213 - 253034 + | transposase, IS21 family pRALTA_0299 254122 - 253469 - | hypothetical protein pRALTA_0300 254347 - 254706 + | hypothetical protein TERM 181 254980 - 254953 - f 89 -12.7 -4.14243 | CAGTGTAGCCGAAAA TGGCGTCGCTG CCCCGC CTGCGACGCCA CCTGAATACCCCTTC TERM 182 256049 - 256074 + G 75 -9.7 -3.9693 | AGCCGGAATCCCAGC GCTACGCGGTA CTGG TGCTGCGTGGC TTCTTTGCCTGGCTC pRALTA_0301 255091 - 256941 + | Phage integrase TERM 183 257433 - 257450 + F 100 -9.1 -5.40072 | gap 1 GCCTCTCCAAGGGTA CGGCGGCG GAA CGCC-CCG TTTTTTTGACGCCGC TERM 184 259053 - 259036 - f 95 -3.5 -5.75342 | gap 1 CGCGGCCAAAAAAAA GGTTCTTC GCA GAA-AACC GTGGCCCGAAAGAGC TERM 185 259339 - 259355 + G 74 -11.5 -3.73072 | TCGGGTCGTACTGCA CGTGCCG CGC CGGCGCG TTTGGTGCGACCGTT pRALTA_0305 259115 - 260335 + | transposase, ISL3 family TERM 186 260363 - 260348 - T 100 -11.8 -6.23209 | opp_overlap 260347 260346 TGAACCAAAAAAAAA CCCGCC ATTT GGCGGG CCTTCTTGTCACCTC parB3 261358 - 260387 - | Plasmid partition protein B parA3 262566 - 261355 - | Plasmid partition protein A TERM 187 262407 - 262433 + g 91 -8.6 -4.82901 | overlap 262374 262408 TGCACATCTCGGCGA TCTCCCCGGTCT TGA ATACCGGGGCGG TTTTTCTAGGACGCG TERM 188 263303 - 263341 + H 75 -4.5 -4.73341 | gap 1, overlap 263305 GCATCTGACGAGCCC CA-GCACAGTCGGCGATC TTGT GAGCGTGGACCGTGCCTG TTTGTTTAGTTTTTT TERM 189 263839 - 263824 - g 72 -6.1 -4.34402 | CGGTGGAGATCAAAA CGAGG ACCACG CCTCG GCAAATGGCGCTCGC repB 263793 - 265190 + | putative initiator replication protein B repA3 266505 - 265177 - | Replication protein A TERM 190 266440 - 266458 + g 72 -4.4 -4.57882 | overlap 266441 GACAGGTTTAGGAGC ATGCGACG CAT CGCCGCAC TTTGTTGTTCTTCGG pRALTA_0312 266787 - 267887 + | transposase, IS4 family TERM 191 268014 - 267995 - f 100 -12.2 -4.56597 | opp_overlap 267995 CCTTGCGGGGAAAAA CTCATCGC TAGC GCGATGAG TACTTCAGCAGCCTG pRALTA_0313 268135 - 268410 + | hypothetical protein pRALTA_0314 268407 - 269072 + | Putative protein-S-isoprenylcysteine methyltransferase (czcN homolog); putative membrane protein TERM 192 269184 - 269211 + G 71 -2 -4.57569 | gap 1, overlap 269189 TGGGTAGCACTCCCG GAGCCGTTCATGA ACT TCATGAACT-CAC TTTTTCACGGGCTCG pRALTA_0315 269097 - 269363 + | conserved hypothetical protein; putative exported protein; putative membrane protein pRALTA_0317 271453 - 270233 - | transposase, ISL3 family pRALTA_0316 269727 - 270296 + | putative transporter; Formate/nitrite transporter partial domain TERM 193 271229 - 271213 - Gf 76 -11.5 -3.73072 | AACGGTCGCACCAAA CGCGCCG GCG CGGCACG TGCAGTACGACCCGA TERM 194 272542 - 272562 + FH 100 -18.3 -5.74086 | ATGCGTCCCTTATAG CGCCCGACG TTT CGTCGGGCG TTTTTTCTTTAGTTT pRALTA_0321 272946 - 274310 + | putative desulfurization enzyme TERM 195 274607 - 274641 + G 73 -7.8 -4.13014 | opp_overlap 274598 274621, overlap 274584 CAAGACGCGGCTATC CGGTTCTCGAGCAAGA GCG TCTCGGTCGAGGAGCG TTTTGCCGATGTGGA rutF 274364 - 274873 + | flavin:NADH oxidoreductase pRALTA_0325 276820 - 278295 + | putative solute:sodium symporter ribE2 278343 - 278882 + | 6,7-dimethyl-8-ribityllumazine synthase (DMRL synthase) (Lumazine synthase) (Riboflavin synthase beta chain) pRALTA_0327 278942 - 279481 + | putative acyltransferase with acyl-CoA N-acyltransferase domain TERM 196 279808 - 279841 + G 100 -8.9 -5.30155 | gap 1, overlap 279837 CTGGTATTCGCCGTA TTCGGACTCGCGGACA GGT TCTCGGCGAG-CCGAA TTTTTTGGTTCATCG pRALTA_0328 279571 - 279888 + | putative transporter, MSF familly, N_term fragment pRALTA_0329 281071 - 279851 - | transposase, ISL3 family TERM 197 280847 - 280831 - G 74 -11.5 -3.73072 | AACGGTCGCACCAAA CGCGCCG GCG CGGCACG TGCAGTACGACCCGA pRALTA_0330 281116 - 282108 + | putative transporter, Major facilitator superfamily MFS_1 precursor pRALTA_0332 283180 - 283443 + | hypothetical protein pRALTA_0333 283398 - 284819 + | transposase, IS21 family pRALTA_0334 284827 - 285582 + | transposase, IS21 family TERM 198 285840 - 285821 - f 75 -2.8 -4.93968 | gap 1, opp_overlap 285828 285829, overlap 285824 285825 285826 ACCGAGAAGCAAAAA GAATCGCCG CGG CGG-GATGC GGAGACGTCCCGACA pRALTA_0335 285956 - 287056 + | transposase, IS5 family TERM 199 287183 - 287164 - T 100 -12.2 -4.56597 | opp_overlap 287164 CCTTGCGGGGAAAAA CTCATCGC TAGC GCGATGAG TACTTCAGCAGCCTG pRALTA_0338 290957 - 287958 - | hypothetical protein TERM 200 290304 - 290291 - G 91 -3.8 -5.44119 | TGGAGGTGAAAAAAA CACC GCTGCT GGTG ACCACCGCATAGCTG TERM 201 291036 - 291082 + r 76 -13.9 -3.1154 | gap 1, opp_overlap 291025, overlap 291032 291046 AGCAGGACGGCCGGT C-CAGCGACAATCATTTTGGCC GGTT GGCCGGGATGATTGTCGGTGAG TGTTAGGTCATGGTT pRALTA_0339 291921 - 291085 - | transposase, IS21 family pRALTA_0340 293417 - 291918 - | Integrase, catalytic region, IS21 family pRALTA_0341 294264 - 293383 - | hypothetical protein, BNR repeat; putative glycosyl trasnferase fragment TERM 202 294773 - 294803 + r 100 -23.4 -3.15544 | CGCGCATCTGCTCAA GCCCTCCAGTGCGA GCG TCGCGCTGGAGGGC TTCCTGGAGATCCGC pRALTA_0343 295695 - 294886 - | Integrase, catalytic region pRALTA_0344 296003 - 295692 - | transposase, IS3 family pRALTA_0346 297287 - 296532 - | transposase, IS21 family pRALTA_0347 298716 - 297295 - | transposase, IS21 family pRALTA_0348 298934 - 298671 - | hypothetical protein pRALTA_0349 299807 - 299235 - | hypothetical protein pRALTA_0350 300158 - 299856 - | hypothetical protein pRALTA_0352 301178 - 301948 + | transposase, IS4 family nodQ-like 302753 - 302154 - | nodulation protein, Adenylyl-sulfate kinase (APS kinase) (ATP adenosine-5'-phosphosulfate 3'-phosphotransferase) nodU 304633 - 302912 - | NodU Carbamoyltransferase TERM 203 303066 - 303053 - G 71 -2.3 -4.56775 | opp_overlap 303061 AGCGTCGGGGAAAAA TCCTC GGCC GTGGA AATTCGCGCTTGTGT nodS 305271 - 304648 - | NodS methyl transferase nodA 305955 - 305362 - | NodA N-acyltransferase nodH 306810 - 306064 - | NodH sulfotransferase nodJ 307681 - 306893 - | NodJ membrane transport nodulation protein, ABC-type transporter nodI 308599 - 307685 - | Nod factor export ATP-binding protein I (Nodulation ATP-binding protein I) nodC 310015 - 308663 - | NodC N-acetylglucosaminyltransferase TERM 204 309547 - 309560 + g 81 -3.1 -5.02074 | overlap 309548 TCGATCTGTCCCGCA TCTTG AGTA CAAGG TTTTTTACGACATCA nodB 311138 - 310428 - | NodB chitooligosaccharide deacetylase TERM 205 311242 - 311260 + H 74 -9.6 -3.9009 | opp_overlap 311242 311241 GTTAGTCGCCACAAC TTTGCGTC AGC GGCGCAAA TTTGTACAATCGATT TERM 206 311929 - 311943 + G 89 -2.1 -5.37345 | gap 1, opp_overlap 311940, overlap 311929 311930 GGACGTTCACGCCGG C-CCTC GATA GAGGAG TTTTTTCTCCTTGAG nodD 311314 - 312246 + | NodD transcriptional regulator; lysR family pRALTA_0365 312718 - 312341 - | hypothetical protein nifA 312710 - 314341 + | NifA transcriptional activator pRALTA_0367 314527 - 314724 + | transposase TERM 207 315502 - 315476 - g 83 -14.5 -3.65902 | TGCAGGGCAGGTAAA GGCTCACCGTC GATGG AACGGTGAGCC AGCAATATCTTAACG insF 314721 - 315515 + | transposase InsF for insertion sequence IS3 TERM 208 317180 - 317152 - g 70 -12.5 -3.33696 | gap 1, overlap 317128 TCGCGCTGGAAGCAA GCGCG-ACCGCA GGCAAG TGCGGTACGCGC TCCGTGGCCACCAAT pRALTA_0370 315970 - 317208 + | transposase, IS110 family TERM 209 317308 - 317291 - f 70 -7.7 -4.0098 | overlap 317292 CGGGAACGTAAAGAA CGGGATC ACCT GATCCCA GGCGCGACGCCAGGA TERM 210 318413 - 318434 + G 71 -10.8 -3.64703 | GGCAGCTTTCACCGG GCGCGGCC GCTGGG GGCTGCGC TTTCGATGGGGCAAA TERM 211 319411 - 319397 - g 76 -2.1 -4.69415 | overlap 319400 319409 AGGAAGACAAAGAAA GAATC AAAGG GATCC TCGGACAGGACGCGC nifE 318301 - 319671 + | nifE oxidoreductase, Nitrogenase iron-molybdenum cofactor biosynthesis protein nifN 319804 - 321111 + | nifN nitrogenase iron-molybdenum cofactor biosynthesis protein nifX-like 321211 - 321897 + | fusion of Protein nifX with DUF683 domain TERM 212 322000 - 322017 + G 79 -7.7 -4.4296 | overlap 322002 CGATCATCATAATTG TATCGGC TGTG GCCGATG TTTTCGTGTGTGTTC fdxB 321917 - 322219 + | FERREDOXIN IRON-SULFUR 4FE-4S nifQ 322229 - 322804 + | NifQ nitrogen fixation protein, molybdenum ion binding pRALTA_0377 323374 - 322889 - | hypothetical protein fixX 323912 - 323613 - | ferredoxin-like protein fixC 325219 - 323909 - | Electron-transferring-flavoprotein dehydrogenase fixB 326343 - 325216 - | Electron transfer flavoprotein, alpha subunit fixA 327188 - 326340 - | Electron transfer flavoprotein beta-subunit nifW 327542 - 327204 - | Nitrogen fixation accessory protein NifW TERM 213 327599 - 327611 + r 71 -4.7 -4.46854 | CGGGCCGCGCTATTT CGACG GGC CGACG TTTATTGTTAGCTAA nifV 328706 - 327651 - | Homocitrate synthase nifB 329107 - 330678 + | NifB FeMo cofactor biosynthesis protein fdxN 330763 - 330954 + | FdxN ferredoxin TERM 214 331496 - 331522 + G 72 -3.6 -4.56597 | overlap 331497 GTGACCACATCGCGG GTCCACCGTC CATCACA GACGGGGGAA TTTTTGACGGGGCCG nifZ 331162 - 331569 + | nifZ nitrogen fixation protein fixU 331913 - 332122 + | FixU nitrogen fixation protein pRALTA_0388 332124 - 332405 + | hypothetical protein pRALTA_0389 332507 - 332743 + | hypothetical protein TERM 215 332863 - 332897 + F 70 -10.1 -3.62046 | gap 1, opp_overlap 332872 332873, overlap 332864 332872 TAGGGCTACAACAAG TTCCGGAAAGC-CGCG ATTT CGCGGGTTTTCTGGAG TTCTTAGCGACATGG TERM 216 332872 - 332887 + F 74 -6 -4.44461 | opp_overlap 332872 332873, overlap 332864 332863 AACAAGTTCCGGAAA GCCGCG ATTT CGCGGG TTTTCTGGAGTTCTT TERM 217 333086 - 333096 + G 75 -6.8 -4.4648 | CAATGTCTAACCTTC GGCA AAT TGCC TTTTATGGTAAAGGT nifH 333073 - 333954 + | NifH nitrogenase Fe protein (Nitrogenase component II)(dinitrogenase reductase) TERM 218 333969 - 333994 + F 83 -14.7 -3.53224 | opp_overlap 333971, overlap 333971 GTCAGGCTTGAACGA CAGCCGCCGTG CACG CACGGCGGCTA TTTGCGACGAGCATG TERM 219 333971 - 333992 + F 91 -17.3 -3.34398 | opp_overlap 333971, overlap 333969 CAGGCTTGAACGACA GCCGCCGTG CACG CACGGCGGC TATTTGCGACGAGCA TERM 220 333992 - 333971 - f 87 -17.3 -2.90392 | opp_overlap 333971 333969 CAGGCTTGAACGACA GCCGCCGTG CACG CACGGCGGC TATTTGCGACGAGCA TERM 221 334635 - 334649 + G 73 -7 -4.22009 | opp_overlap 334634 334637 CATCATTTGGCAAAC GACGCG ATC CGCGAC TTTGTGTTCGATGCT nifD 334020 - 335492 + | NifD nitrogenase molybdenum-iron protein alpha chain (Nitrogenase component I) (Dinitrogenase) nifK 335561 - 337120 + | NifK nitrogenase molybdenum-iron protein beta chain (Nitrogenase component I) (Dinitrogenase) pRALTA_0393 337920 - 338270 + | transposase, IS66 family TERM 222 338850 - 338837 - g 71 -9.5 -3.71284 | GCGGCATCAAGACAA CGCCG GCAC CGGCG CGCATTATTCCCAAG TERM 223 339509 - 339494 - g 78 -10.4 -4.15044 | TTCGCGCCGAACAAA GCCAGC CGCT GCTGGC CGAGATCGAAACAAT pRALTA_0394 338302 - 341112 + | fused transposase IS66/IS21 pRALTA_0395 341693 - 342727 + | putative Histidinol-phosphate aminotransferase 1 (Imidazole acetol-phosphate transaminase 1) TERM 224 343544 - 343523 - g 71 -3 -4.56775 | ACCTTTGGGGAAAAA CCGATG TTGTTCTGGC CATCGG TACCAACATGCGAAT ilvI2 342742 - 344340 + | Acetolactate synthase large subunit pRALTA_0397 344694 - 344900 + | hypothetical protein pRALTA_0398 347239 - 344897 - | conserved hypothetical protein; putative phosphoenolpyruvate synthase/pyruvate phosphate dikinase TERM 225 346725 - 346707 - G 71 -10.2 -3.72695 | ATTGCTGGCACCAAA CGCCGGAG AGG CTCCGGTG CATCGTGGCCCGGTA TERM 226 347632 - 347648 + H 80 -5.9 -4.71791 | opp_overlap 347632, overlap 347622 CCGTTTGCTTATATA GTAAAGG CAC TCTTTAC TTTATTTATTGGTAT pRALTA_0405 349226 - 349474 + | hypothetical protein TERM 227 350352 - 350320 - g 75 -10.5 -3.96892 | gap 1, overlap 350308 AATGCCGACCAGAAA CTGCGCGCCG-GCA TGTTCG CGCGCGGCGCGCTG GTGCTGGGCCAGCGC TERM 228 350534 - 350507 - g 78 -14.1 -3.55444 | overlap 350488 GCGGCATGGTCGAAA TCGTCGCCGGC CTCGAC GCCGGCGCCGA GATCGTGCGCAACAA pRALTA_0406 349492 - 350598 + | secretion protein, nolF homolog pRALTA_0407 350619 - 353837 + | Multidrug efflux transporter AcrB/AcrD/AcrF family, nolG homolog pRALTA_0408 354108 - 355208 + | transposase, IS5 family TERM 229 355335 - 355316 - T 100 -12.2 -4.56597 | opp_overlap 355316 CCTTGCGGGGAAAAA CTCATCGC TAGC GCGATGAG TACTTCAGCAGCCTG pRALTA_0409 355611 - 355351 - | hypothetical protein pRALTA_0410 357258 - 355660 - | transposase, IS6 family pRALTA_0411 357616 - 357266 - | transposase IS66 Orf2 like protein pRALTA_0412 358068 - 357616 - | putative transposase, IS66 family pRALTA_0413 358313 - 359617 + | transposase, IS4 family pRALTA_0414 359686 - 360291 + | transposase fragment pRALTA_0415 360299 - 360970 + | transposase, IS21 family pRALTA_0416 361025 - 361387 + | putative transposase, IS66 family TERM 230 361724 - 361770 + G 72 -13.9 -3.1154 | gap 1, opp_overlap 361713, overlap 361720 361734 AGCAGGACGGCCGGT C-CAGCGACAATCATTTTGGCC GGTT GGCCGGGATGATTGTCGGTGAG TGTTAGGTCATGGTT pRALTA_0417 361387 - 361776 + | IS66 Orf2 like pRALTA_0418 362609 - 361773 - | transopsase, IS21 family pRALTA_0419 364105 - 362606 - | Integrase, catalytic region, IS21 family TERM 231 365177 - 365213 + G 71 -9.9 -3.70902 | GTATGTGCGTGACGA CCGGACGTCGGGCGATG CTA CTCCGCCGGCCGTCTGG TTTGCCTATACGCCG pRALTA_0421 364335 - 365906 + | transposase, IS66 familly pRALTA_0424 366855 - 366553 - | hypothetical protein phaZ6 368383 - 366917 - | Poly(3-hydroxybutyrate) depolymerase precursor (PHB depolymerase) TERM 232 366993 - 366982 - G 71 -3 -4.60797 | TGTTGATATAGAAAA GATT ATTT AATC CCATGCTTTGGTTCG TERM 233 367865 - 367840 - G 78 -6 -4.58283 | overlap 367841 CAACGCCGGCAAAAA TGTCCGGGGC GATGCA GCCCAGGACC ATGCTCATGCCGCCT pRALTA_0426 368805 - 370133 + | transposase, IS4 family pRALTA_0427 371205 - 370105 - | transposase, IS4 family pRALTA_0428 371414 - 371229 - | putative transposase fragment pRALTA_0429 371663 - 371430 - | transposase fragment, IS1111 xpsR3 373146 - 372379 - | transcriptional regulator betB3 374793 - 373312 - | betaine aldehyde dehydrogenase, NAD-dependent TERM 234 373714 - 373689 - G 100 -11.1 -4.84359 | overlap 373690 TTACGTCGATAAAAA CGGTGGGCTGT ACAA ACTGCCCACCA GAGAGATCCCGCATA TERM 235 373713 - 373690 - G 73 -12.4 -3.50133 | overlap 373689 TACGTCGATAAAAAC GGTGGGCTGT ACAA ACTGCCCACC AGAGAGATCCCGCAT pRALTA_0432 375410 - 375192 - | hypothetical protein pRALTA_0434 375690 - 376415 + | putative transcriptional regulator, IclR family pRALTA_0436 377467 - 378054 + | hypothetical protein pRALTA_0437 378716 - 378336 - | transposase fragment, IS1111 family pRALTA_0438 379650 - 378820 - | transposase, IS3 family pRALTA_0439 379958 - 379647 - | transposase, IS3 family pRALTA_0440 380237 - 379983 - | transposase fragment, IS1111 family pRALTA_0441 380597 - 381697 + | transposase, IS5 family TERM 236 381824 - 381805 - T 100 -12.2 -4.56597 | opp_overlap 381805 CCTTGCGGGGAAAAA CTCATCGC TAGC GCGATGAG TACTTCAGCAGCCTG pRALTA_0442 382884 - 381865 - | putative Zinc-containing alcohol dehydrogenase pRALTA_0443 383963 - 382959 - | putative Branched-chain amino acid transport system, Inner-membrane component TERM 237 383767 - 383729 - G 74 -11.8 -3.74526 | overlap 383738 TCAGGAATCCAAGAA TGGCAGAAACCACCATAC CGA GTACGATGGCTCCTTCCA TTGGGATGCCAAGAT TERM 238 383758 - 383738 - G 70 -8.3 -3.95051 | overlap 383729 CAAGAATGGCAGAAA CCACCATAC CGA GTACGATGG CTCCTTCCATTGGGA TERM 239 383901 - 383891 - G 79 -4.6 -4.71061 | ATGCACATGCAAAAA GCGC GAA GCAC ATGATCTTCATAAGG TERM 240 383976 - 383995 + r 100 -12.2 -4.56597 | opp_overlap 383976 CAGGCTGCTGAAGTA CTCATCGC GCTA GCGATGAG TTTTTCCCCGCAAGG pRALTA_0444 385203 - 384103 - | transposase, IS5 family pRALTA_0446 386003 - 385692 - | transposase, IS3 family pRALTA_0447 386195 - 386485 + | transposase fragment, ISL3 family pRALTA_0449 387932 - 386619 - | Cytochrome P450-terp pRALTA_0450 388490 - 388185 - | conserved hypothetical protein; putative exported protein pRALTA_0451 389654 - 388530 - | conserved hypothetical protein; putative exported protein pRALTA_0452 389818 - 389943 + | hypothetical protein pRALTA_0453 390179 - 390634 + | hypothetical protein pRALTA_0454 392034 - 390706 - | transposase, IS4 family pRALTA_0455 392185 - 392709 + | hypothetical protein pRALTA_0456 393695 - 393144 - | putative transposase fragment pRALTA_0457 395334 - 393964 - | transposase, ISNCY family TERM 241 394764 - 394744 - G 75 -9 -4.13767 | gap 1 CTTGTCACTGTAAAA CGCCACCGG CTTG CCG-TGGCG CTCCAGGTAGGCGCG TERM 242 395369 - 395356 - H 72 -4.5 -4.57837 | gap 1, opp_overlap 395357, overlap 395358 AGACCGTTTCAAAAA GACCCC GAG GGGG-C TGTTAACCTTTTCGG TERM 243 395368 - 395358 - H 71 -8.2 -3.90316 | opp_overlap 395357, overlap 395356 ACCGTTTCAAAAAGA CCCC GAG GGGG CTGTTAACCTTTTCG pRALTA_0458 395428 - 395871 + | transposase, IS5 family pRALTA_0459 395901 - 396197 + | transposase (fragment) TERM 244 397630 - 397612 - g 71 -2.5 -4.63218 | gap 1, overlap 397615 TTGGCTCGAAGAAAA GT-ATTCC GGCT GGAATGAC ACGTTTGGCAAGGCC tmoA 396530 - 398035 + | Toluene-4-monooxygenase system protein A TERM 245 398042 - 398026 - f 70 -7.2 -3.9644 | overlap 398023 398028 GCGCGAACAGAACAA GACCGC CTGAT GCGGCC ATCAGATGGATAATG tmoB 398060 - 398320 + | Toluene-4-monooxygenase system protein B tmoC 398684 - 398301 - | Toluene-4-monooxygenase effector protein complex, benzene monooxygenase ferredoxin tmoD 398683 - 399000 + | Toluene-4-monooxygenase system protein D tmoE 399013 - 400011 + | Toluene-4-monooxygenase system protein E pRALTA_0467 400568 - 401806 + | transposase, IS4 family pRALTA_0470 403285 - 402899 - | putative transposase fragment, IS6 family pRALTA_0471 404569 - 403742 - | putative Sterol desaturase; putative membrane protein TERM 246 404714 - 404701 - R 75 -3.1 -4.82901 | overlap 404702 TCGCGCGCACAAAAA CCAAG CAAT CTTGA CGTTACATTCCATGG pRALTA_0472 405180 - 404863 - | hypothetical protein pRALTA_0473 405457 - 406557 + | transposase, IS5 family TERM 247 407220 - 407199 - g 71 -10.1 -3.72324 | GAGTTCGACCAAGAA TGGGTCGGG CGAA CGCGACCCA GAGATGCACCAGAGC pRALTA_0474 406744 - 407706 + | transposase, IS5 family pRALTA_0475 407955 - 408233 + | transposase fragment, IS5 pRALTA_0476 408324 - 408899 + | transposase fragment, IS5 TERM 248 409199 - 409225 + F 78 -3.6 -4.99035 | CTCAATCGGCCAAAA GCGTAGTATTAG TGG CTTATGCGGCGC TTTTTCTGTGACTAA pRALTA_0477 409294 - 409743 + | hypothetical protein pRALTA_0478 409756 - 410514 + | hypothetical protein pRALTA_0479 410518 - 411042 + | hypothetical protein TERM 249 411063 - 411098 + F 90 -13.5 -4.00038 | gap 2, opp_overlap 411070 411071, overlap 411071 CTTTGCATCATGTCT TGACAAAGCGGCCCGCA ATTA TGCGGGCCG-TTTG-CA TTTCTGGTGCTAATG TERM 250 411093 - 411070 - f 86 -13.8 -3.86346 | opp_overlap 411063 411071, overlap 411071 TCATGTCTTGACAAA GCGGCCCGCA ATTA TGCGGGCCGT TTGCATTTCTGGTGC TERM 251 411092 - 411071 - f 87 -17.3 -2.91593 | opp_overlap 411063 411071, overlap 411070 CATGTCTTGACAAAG CGGCCCGCA ATTA TGCGGGCCG TTTGCATTTCTGGTG TERM 252 411071 - 411092 + F 100 -17.3 -3.90286 | opp_overlap 411071 411070, overlap 411063 CATGTCTTGACAAAG CGGCCCGCA ATTA TGCGGGCCG TTTGCATTTCTGGTG TERM 253 411272 - 411242 - f 85 -14.9 -3.54129 | opp_overlap 411242 TAGAGTGGCGCCAAA GTAGTTCCCACCA AATAG TGATGGGAACTAC TTTGTCACAGTTACA TERM 254 411242 - 411272 + F 83 -12.7 -3.89614 | opp_overlap 411242 TAGAGTGGCGCCAAA GTAGTTCCCACCA AATAG TGATGGGAACTAC TTTGTCACAGTTACA pRALTA_0481 411669 - 412016 + | transposase, IS66 family TERM 255 412669 - 412715 + G 72 -13.9 -3.1154 | gap 1, opp_overlap 412658, overlap 412665 412679 AGCAGGACGGCCGGT C-CAGCGACAATCATTTTGGCC GGTT GGCCGGGATGATTGTCGGTGAG TGTTAGGTCATGGTT pRALTA_0482 412047 - 412721 + | transposase, IS66 family pRALTA_0483 413554 - 412718 - | transposase, IS21 family pRALTA_0484 415050 - 413551 - | Integrase, catalytic region pRALTA_0485 415190 - 415849 + | transposase fragment pRALTA_0486 415747 - 416304 + | transposase fragment TERM 256 416431 - 416412 - T 100 -12.2 -4.56597 | opp_overlap 416412 CCTTGCGGGGAAAAA CTCATCGC TAGC GCGATGAG TACTTCAGCAGCCTG pnlA 418771 - 417629 - | Pectin/pectate lyase pRALTA_0489 419321 - 418845 - | transposase fragment, IS3 family pRALTA_0492 420718 - 420281 - | hypothetical protein TERM 257 420682 - 420698 + g 81 -3.7 -4.95155 | TTGAGTCGATAAATT TGTCAGT ATC ATTGGCA TTTTTATCATGTGCA TERM 258 421217 - 421228 + H 85 -3.6 -5.38054 | TATTTGGGCACCTCG GTGC CGGC GCGC TTTTTGTTTCTAAGC pRALTA_0497 422925 - 423275 + | transposase IS66 Orf2 like protein pRALTA_0499 424784 - 423684 - | transposase, IS5 family pRALTA_0498 423283 - 423738 + | transposase, IS66 family TERM 259 426171 - 426188 + GTr 70 -7.7 -4.0098 | overlap 426172 TCCTGGCGTCGCGCC TGGGATC AGGT GATCCCG TTCTTTACGTTCCCG pRALTA_0502 427509 - 426271 - | transposase, IS110 family TERM 260 426299 - 426327 + Gg 70 -12.5 -3.33696 | gap 1, overlap 426313 ATTGGTGGCCACGGA GCGCGTACCGCA CTTGCC TGCGGT-CGCGC TTGCTTCCAGCGCGA pRALTA_0501 425181 - 426539 + | transposase, IS256 family pRALTA_0503 427521 - 427967 + | transposase fragment, IS256 family TERM 261 427977 - 428003 + F 85 -14.5 -3.65902 | CGTTAAGATATTGCT GGCTCACCGTT CCATC GACGGTGAGCC TTTACCTGCCCTGCA TERM 262 430295 - 430267 - g 74 -10.9 -3.78934 | CGTGCTCGACAACAA CCGCTTCAGCAGG GAT CCTGCCGACTCGG CTCCGCGGTTCCAGA pRALTA_0506 429299 - 431371 + | hypothetical protein; putative hydrolase pRALTA_0508 432343 - 432128 - | hypothetical protein pRALTA_0509 432718 - 434046 + | transposase, IS4 family pRALTA_0510 434210 - 434524 + | Histone-like nucleoid-structuring protein H-NS TERM 263 434627 - 434673 + T 76 -13.9 -3.1154 | gap 1, opp_overlap 434616, overlap 434623 434637 AGCAGGACGGCCGGT C-CAGCGACAATCATTTTGGCC GGTT GGCCGGGATGATTGTCGGTGAG TGTTAGGTCATGGTT pRALTA_0511 435512 - 434676 - | transposase, IS21 family pRALTA_0512 437008 - 435509 - | transposase, IS21 family; Integrase, catalytic region pRALTA_0513 437186 - 436974 - | hypothetical protein TERM 264 437163 - 437221 + gr 100 -32.9 -3.13906 | gap 1, opp_overlap 437169 437182, overlap 437165 ATGATTGTCGCCGCC -CAAGCAGGCTGCTGAAGTACTCATCGC TAGC GCGATGAGTACTTCAGCAGCCTGCTAGA TGCTTTTCACTTCCG TERM 265 437214 - 437169 - GR 100 -33.7 -2.70932 | opp_overlap 437163 437165, overlap 437182 GTCGCCGCCCAAGCA GGCTGCTGAAGTACTCATCGC TAGC GCGATGAGTACTTCAGCAGCC TGCTAGATGCTTTTC pRALTA_0514 438633 - 437305 - | transposase, IS4 family TERM 266 439573 - 439598 + G 78 -6 -4.58283 | overlap 439574 AGGCGGCATGAGCAT GGTCCTGGGC TGCATC GCCCCGGACA TTTTTGCCGGCGTTG TERM 267 440445 - 440456 + G 71 -3 -4.60797 | CGAACCAAAGCATGG GATT AAAT AATC TTTTCTATATCAACA phaZ7 438968 - 440521 + | Poly(3-hydroxybutyrate) depolymerase precursor (PHB depolymerase) pRALTA_0516 440583 - 440885 + | hypothetical protein pRALTA_0519 443103 - 441532 - | Transposase, IS66 family TERM 268 442261 - 442225 - G 71 -9.9 -3.70902 | CGGCGTATAGGCAAA CCAGACGGCCGGCGGAG TAG CATCGCCCGACGTCCGG TCGTCACGCACATAC pRALTA_0520 443480 - 443133 - | transposase, IS6 family pRALTA_0521 443842 - 443480 - | putative transposase, IS66 family TERM 269 444237 - 444219 - R 78 -5.2 -4.7033 | overlap 444225 CAAGCGAAGAGAAAA GAACACCC GAC GGCTGCTC TTACAATGTGCGCGG pRALTA_0524 445836 - 444874 - | transposase, IS5 family TERM 270 445360 - 445381 + g 71 -10.1 -3.72324 | GCTCTGGTGCATCTC TGGGTCGCG TTCG CCCGACCCA TTCTTGGTCGAACTC pRALTA_0528 448415 - 447087 - | transposase, IS4 family pRALTA_0529 448941 - 448597 - | transposase fragment, IS5 family pRALTA_0530 449355 - 449143 - | transposase fragment, IS5 family pRALTA_0531 449466 - 451592 + | prolyl endopeptidase TERM 271 452374 - 452356 - g 70 -12.4 -3.33696 | opp_overlap 452365 CTTTTGGTCAAGGAA GTGGCGCA CCA CGCGCCAC AGCACACTGTCGGCA pRALTA_0532 451715 - 452461 + | transposase fragment, IS5 family pRALTA_0534 452870 - 453205 + | transposase fragment, IS4 family pRALTA_0535 454944 - 453373 - | Transposase, IS66 family TERM 272 454102 - 454066 - G 71 -9.9 -3.70902 | CGGCGTATAGGCAAA CCAGACGGCCGGCGGAG TAG CATCGCCCGACGTCCGG TCGTCACGCACATAC pRALTA_0536 455321 - 454974 - | transposase, IS66 family TERM 273 456078 - 456060 - R 78 -5.2 -4.7033 | overlap 456066 CAAGCGAAGAGAAAA GAACACCC GAC GGCTGCTC TTACAATGTGCGCGG pRALTA_0540 457677 - 456715 - | transposase, IS5 family TERM 274 457201 - 457222 + g 71 -10.1 -3.72324 | GCTCTGGTGCATCTC TGGGTCGCG TTCG CCCGACCCA TTCTTGGTCGAACTC pRALTA_0541 458807 - 458274 - | hypothetical protein pRALTA_0542 459199 - 458756 - | hypothetical protein TERM 275 459090 - 459106 + gH 73 -10.9 -3.66178 | GCGTGCCAGGCCGTG CTCGATG CGC CATCGAG TTTGGGGTTCAGGAA TERM 276 459532 - 459589 + GH 85 -14.2 -3.54741 | gap 2, overlap 459533 CACGCTTGAGCGCTG GCGTGCAGACGCTATGTCCATGCCCGCT CGCG AGCGGGCATGGACA--GCGGCGGCAAGG TTTGAGGCGGTGCTG TERM 277 459533 - 459588 + GH 86 -17.7 -2.7263 | gap 2, overlap 459532 ACGCTTGAGCGCTGG CGTGCAGACGCTATGTCCATGCCCGCT CGCG AGCGGGCATGGACA--GCGGCGGCAAG GTTTGAGGCGGTGCT TERM 278 459889 - 459899 + G 75 -4.6 -4.6645 | overlap 459874 459886 TGCCGGCCGAGGTCG CCGG GCG CTGG TTTTATCTGTATCTG pRALTA_0543 459410 - 460057 + | transposase, IS3 family pRALTA_0544 459852 - 460313 + | transposase, IS3 family pRALTA_0546 460871 - 461374 + | transposase, IS21 family pRALTA_0547 461115 - 461717 + | transposase, IS21 family pRALTA_0548 461557 - 462372 + | transposase, IS21 family pRALTA_0549 462380 - 463135 + | transposase, IS21 family pRALTA_0557 465842 - 465372 - | putative transcriptional regulator, AsnC/Lrp family pRALTA_0558 466279 - 465977 - | hypothetical protein pRALTA_0561 468029 - 466983 - | transposase, IS66 family pRALTA_0563 468397 - 468122 - | transposase, IS66 family pRALTA_0565 468734 - 468582 - | transposase fragment, IS3 family pRALTA_0566 469105 - 468767 - | putative beta-lactamase precursor pRALTA_0567 469958 - 469173 - | putative beta-lactamase precursor pRALTA_0568 470046 - 471146 + | transposase, IS5 family TERM 279 471273 - 471254 - T 100 -12.2 -4.56597 | opp_overlap 471254 CCTTGCGGGGAAAAA CTCATCGC TAGC GCGATGAG TACTTCAGCAGCCTG pRALTA_0569 472372 - 471278 - | transposase, IS4 family pRALTA_0570 472694 - 472323 - | hypothetical protein TERM 280 472762 - 472733 - H 91 -2.9 -5.40474 | overlap 472734 AGTCGGCCAAAAAAA GCTGCATATTGAT AGAC ATCAACACACAGT GGGGAGGCAACCTGT TERM 281 472958 - 472934 - H 75 -3.3 -4.82901 | overlap 472935 GGCTTCCGATAAAAA TCCCGTGTGCC GCT GACTCTCGGGC TATAGGCAAGCAATA pRALTA_0572 473260 - 475338 + | putative modular protein; sulfotransferase N_term, MSF transporter C_term pRALTA_0573 475539 - 477164 + | conserved hypothetical protein, condensation domain pRALTA_0574 476968 - 478458 + | putative sugar-alcohol dehydrogenase TERM 282 478491 - 478522 + G 78 -5.9 -4.66163 | gap 1, overlap 478495 CACTGGCCATTTGGC TGAATGGGAGCGCG AAATC CGCTCTTCCAT-CA TTTTTAAATCCGCCT pRALTA_0575 478459 - 478776 + | conserved hypothetical protein; putative aminotransferase TERM 283 478764 - 478783 + F 100 -12.2 -4.56597 | opp_overlap 478764 CAGGCTGCTGAAGTA CTCATCGC GCTA GCGATGAG TTTTTCCCCGCAAGG pRALTA_0576 479098 - 480402 + | transposase, IS4 family phaP3 480717 - 481283 + | Phasin (PHA-granule associated protein) pRALTA_0578 482147 - 482482 + | transposase, IS66 family pRALTA_0579 483372 - 482542 - | Integrase, IS3 family pRALTA_0580 483680 - 483369 - | transposase, IS3 family cspA 484123 - 484326 + | major cold shock protein pRALTA_0582 484743 - 484925 + | hypothetical protein pRALTA_0583 486184 - 485222 - | transposase, IS5 family TERM 284 485708 - 485729 + g 71 -10.1 -3.72324 | GCTCTGGTGCATCTC TGGGTCGCG TTCG CCCGACCCA TTCTTGGTCGAACTC pRALTA_0584 486341 - 486940 + | transposase fragment, IS5 family pRALTA_0585 487156 - 486908 - | transposase fragment, IS66 family pRALTA_0587 489235 - 488015 - | transposase, ISL3 family pRALTA_0586 487241 - 488293 + | transposase, IS21 family TERM 285 489011 - 488995 - Gf 76 -11.5 -3.73072 | AACGGTCGCACCAAA CGCGCCG GCG CGGCACG TGCAGTACGACCCGA pRALTA_0588 489329 - 489487 + | transposase fragment TERM 286 489566 - 489525 - T 73 -11.5 -3.61517 | opp_overlap 489531, overlap 489533 489537 ACGGTTGGGTAAGAA GGTCAACAGCAAGGGGCCG CATG CGGCCCCTTGCTGTTTGGG TTGGACAGCAGGTTA TERM 287 489531 - 489560 + T 100 -23.7 -3.75153 | opp_overlap 489525 489533 489537 GGGTAAGAAGGTCAA CAGCAAGGGGCCG CATG CGGCCCCTTGCTG TTTGGGTTGGACAGC TERM 288 489558 - 489533 - T 95 -20.5 -3.12749 | opp_overlap 489531, overlap 489525 489537 GTAAGAAGGTCAACA GCAAGGGGCCG CATG CGGCCCCTTGC TGTTTGGGTTGGACA TERM 289 489554 - 489537 - T 77 -14.1 -3.37959 | opp_overlap 489531, overlap 489533 489525 GAAGGTCAACAGCAA GGGGCCG CATG CGGCCCC TTGCTGTTTGGGTTG pRALTA_0589 489785 - 489579 - | transposase fragment pRALTA_0590 490267 - 489782 - | transposase fragment, IS21 family TERM 290 489952 - 489974 + g 95 -15 -4.30719 | opp_overlap 489949 CATTCGGGAACACCT CAGACCATTC GAC GAATGGTCTG TTTGTTGTAACCACC pRALTA_0591 490549 - 490298 - | transposase fragment, IS21 family pRALTA_0592 492038 - 490536 - | transposase, IS21 family TERM 291 491956 - 491981 + g 70 -9 -3.88291 | opp_overlap 491955 CGGTGCACATGCAAC TGGCGCGC GATGGTGCCG GCGCGCCA TTTCTCGACGTGGTA TERM 292 492563 - 492612 + G 83 -8.5 -4.65263 | overlap 492565 GCCCTTGGCACGAGT GGGGCACGACATCGGGATGAACT TGGC GGTTTGGACCGGTGTCGTGCCTG TTTCTTTTCGGCGGT TERM 293 492565 - 492610 + G 86 -13.3 -3.93868 | overlap 492563 CCTTGGCACGAGTGG GGCACGACATCGGGATGAACT TGGC GGTTTGGACCGGTGTCGTGCC TGTTTCTTTTCGGCG TERM 294 492622 - 492637 + G 71 -2.5 -4.58395 | gap 1, overlap 492622 TGCCTGTTTCTTTTC GG-CGG TAAAT CCGACC TTTTTACCGCATCCC pRALTA_0593 492248 - 493054 + | hypothetical protein; putative exported protein pRALTA_0595 493175 - 493315 + | transposase fragment, IS21 family pRALTA_0596 493297 - 493545 + | transposase fragment, IS21 family pRALTA_0597 494044 - 493709 - | hypothetical protein pRALTA_0599 495101 - 494805 - | hypothetical protein pRALTA_0598 494615 - 494917 + | hypothetical protein TERM 295 494980 - 495015 + gT 81 -15.6 -3.07895 | opp_overlap 494989, overlap 494989 CCTTCTTTAATCCGC TCCCTCAAAGTTTGAC GCCC GTCTAACTTTGAGGGG TGTATTACCAATGCG pRALTA_0600 495307 - 495206 - | putative phage integrase fragment pRALTA_0601 495587 - 495276 - | putative phage integrase fragment pRALTA_0602 496927 - 495587 - | putative transposase, IS4 family TERM 296 497848 - 497867 + r 100 -12.2 -4.56597 | opp_overlap 497848 CAGGCTGCTGAAGTA CTCATCGC GCTA GCGATGAG TTTTTCCCCGCAAGG pRALTA_0607 499075 - 497975 - | transposase, IS5 family pRALTA_0608 499221 - 499478 + | hypothetical protein pRALTA_0611 499718 - 500272 + | transposase fragment TERM 297 500311 - 500273 - T 77 -13.3 -3.61398 | gap 1, opp_overlap 500253 GGCGTGCCTGAATAA TCGGCAGCTGCCGATTAC TCAG GTAATCAGCAGCAGC-GA GAAATCCGAAGGAAC TERM 298 501133 - 501119 - T 76 -11.4 -3.78904 | GACGAAACTGAAGAA GCTGCG CAA CGCAGC GAGACGACAGTTTGC pRALTA_0614 502744 - 501395 - | Integrase/recombinase pRALTA_0615 503059 - 502760 - | integrase fragment TERM 299 502914 - 502962 + g 78 -13.8 -3.54424 | opp_overlap 502941 CCGCCGCGCAATAGG CTGATGGCACGCGCGTGCCGGA AGGCA TGCGGTCCGCGCTTGCCATTGG TTTGCACGCCTGCAG pRALTA_0616 503960 - 503193 - | insertion sequence putative ATP-binding protein, IS21 family TERM 300 504321 - 504336 + H 74 -2.6 -4.87803 | overlap 504316 ACGGCGATGGTAAAA TTTCAT TTTC GTGAAA TTTTATTTCGCCCTA TERM 301 504470 - 504486 + H 71 -9.4 -3.76125 | GCCCATTGACCAGGC CGCCAC TCATT GTGGCG TTTCCGTTGGCATGC pRALTA_0617 504498 - 504686 + | hypothetical protein TERM 302 505056 - 505066 + T 74 -2.4 -4.84359 | TCGCGTCAAGTTACT GGCG CAG CGCA TTTTTATCCAACTCG pRALTA_0620 506945 - 505383 - | hypothetical protein pRALTA_0621 508460 - 507210 - | integrase/recombinase pRALTA_0622 508938 - 508561 - | putative toxin of toxin-antitoxin stability system, PIN domain pRALTA_0623 509174 - 508938 - | putative Antitoxin of toxin-antitoxin system, phd type pRALTA_0624 509360 - 510427 + | putative cointegrase resolution protein mgtC 511452 - 510730 - | Mg(2+) transport ATPase protein C TERM 303 511304 - 511287 - G 81 -3.3 -4.89852 | opp_overlap 511295 CCATATCTACAAAAA TGGCAGC GCCG ACAGCCA CCAGCACATTGGTGC pRALTA_0627 512815 - 511517 - | putative ABC transporter, ATP-binding component pRALTA_0628 514565 - 512829 - | putative Binding-protein-dependent transporter, inner membrane component TERM 304 513331 - 513343 + g 82 -3.3 -5.00616 | overlap 513321 513332 GCGGCCAGGAACTGC GCCAG TGG CTGGA TTTTTTCGGCAAGCC TERM 305 513581 - 513548 - G 71 -9.5 -3.79906 | gap 1, overlap 513569 GCACTGCCACAAGAA GGCTCCAGACCACGTC AAC GACGCGGGCCAG-GCC AGCCCGCTGGGGGCC pRALTA_0630 516160 - 514772 - | putative porin, OprB partial C-trem domain pRALTA_0631 516462 - 516791 + | hypothetical protein pRALTA_0632 517930 - 516758 - | Phage integrase TERM 306 517263 - 517297 + g 72 -15.7 -2.94099 | gap 1, overlap 517260 TGGACGAAGTCGGCT GCCCT-CGCGCGGGCG GCTT CGCTCGCGCGCAGCGC TGTATGGTAGAGAAA TERM 307 517602 - 517582 - G 93 -13.9 -4.18018 | overlap 517583 GCGGCCCATCGAAAA GCCGCCGCG CGC CGCCGCGGC GCGGCAGGGCCGGGT TERM 308 518934 - 518899 - g 77 -3.9 -4.74801 | overlap 518924 GAACGGCATGAAAAA CAGCTCGCCGGTGTC ATGGAA GAAACGCGCGAACTG CGGCGCGAGCGCGAT pRALTA_0633 518095 - 519042 + | putative cointegrase resolution protein pRALTA_0635 519181 - 519615 + | hypothetical protein TERM 309 520314 - 520303 - g 79 -7.2 -4.41895 | AAGCGGGAACCAAAA CGGC CAAG GCCG CGCGAGGTGGCAAGC pRALTA_0636 519667 - 522648 + | transposase, Tn3 family pRALTA_0638 522878 - 523105 + | hypothetical protein pRALTA_0639 523560 - 523378 - | conserved hypothetical protein; putative exported protein TERM 310 523485 - 523471 - G 76 -7 -4.32951 | overlap 523473 ACGCCAACGAAGAAA GGCGGC AAA GGCGCC GAATAGCAATAGCAG TERM 311 523778 - 523803 + r 73 -12.5 -3.14132 | gap 1, opp_overlap 523772 523771 523769 ACAGAATATTCTGAA GCCGGG-CCCGG ATG CCGGAACCCGGC TTAGTCACGGCCAGA czcA2 526986 - 523819 - | Cobalt-zinc-cadmium resistance membrane component, Cation efflux system czcB2 528581 - 527001 - | Cobalt-zinc-cadmium resistance, Cation efflux system czcC2 529853 - 528597 - | Cobalt-zinc-cadmium resistance protein, cation efflux system czcI2 530282 - 529926 - | cadmium resistance factor TERM 312 530747 - 530798 + G 78 -9.5 -4.1891 | gap 3, opp_overlap 530743 530762 GCACAATCATAGTCA CG-CGACG-CGCAACGAGCGC-GCCT TAA AGGTGGCGCTCGGTCTGACGTCGGCG TTTCTATTGACGGAA czcD 530721 - 531713 + | Cobalt-zinc-cadmium resistance protein, cation efflux system pRALTA_0646 533130 - 531937 - | putative transporter, Major facilitator superfamily MFS_1 TERM 313 532851 - 532839 - G 87 -4.7 -5.10461 | GCCAGGCAACAAAAA GGCCC ATT GCGCC CTGTGCGAAGCCGAG TERM 314 532910 - 532893 - G 73 -9.9 -3.82946 | CGAGCGCAAACACAA TGCTGGT GGCA ACCAGCA CAGAGCGGCCGCCCG pRALTA_0647 533912 - 533148 - | putative NADPH-dependent FMN reductase, arsH like arsC2 534331 - 533909 - | arsenate reductase pRALTA_0649 535417 - 534341 - | putative transporter, Arsenite efflux pump ACR3 permease family pRALTA_0650 535914 - 535420 - | putative Arsenate reductase (Arsenical pump modifier)(Low molecular weight phosphotyrosine protein phosphatase) pRALTA_0651 536440 - 535946 - | putative Arsenate reductase (Arsenical pump modifier)(Low molecular weight phosphotyrosine protein phosphatase) pRALTA_0652 536932 - 536450 - | putative Glyoxalase/bleomycin resistance protein/dioxygenase pRALTA_0653 537258 - 536929 - | putative transcriptional regulator, ArsR family pRALTA_0654 537415 - 537765 + | hypothetical protein TERM 315 540534 - 540554 + G 81 -2.5 -5.00884 | overlap 540535 TCTGGGCAAGATGCT GCGCACA CTCTTCT TGTGCGA TTTTTTCAGCAACAT tnpA 538003 - 540927 + | transposase, Tn3 family pRALTA_0656 542318 - 540960 - | putative Cointegrate resolution protein S / recombinase pRALTA_0657 542735 - 543727 + | putative Cointegrate resolution protein T pRALTA_0658 543825 - 544583 + | hypothetical protein TERM 316 545365 - 545351 - g 71 -11.4 -3.65199 | overlap 545338 AAGCGCTCACCGAAA CTGCCG CTC CGGCAG CTGCGCCGGAAGAGA pRALTA_0659 544708 - 545955 + | Histone-like nucleoid-structuring protein H-NS pRALTA_0660 546103 - 546393 + | hypothetical protein TERM 317 546522 - 546577 + F 79 -15.5 -2.90496 | opp_overlap 546539, overlap 546539 CGGCGGTTCGATTCC GCCCAGGTCCACCAGAAGCGCATTG CACGGA TAGTGCGCTTCTGATGGGCCTGACC TGGTTTCGACAGGGG pRALTA_0661 547004 - 548128 + | hypothetical protein pRALTA_0662 548125 - 549255 + | putative ATPase; putative exported protein pRALTA_0664 549258 - 550229 + | hypothetical protein TERM 318 550574 - 550541 - g 73 -12.4 -3.48593 | gap 2, overlap 550542 GAGTTGCGCACAGAA CTGGCGGCGGCGCGCC ACGA GGCGCGC-GACGCC-G CGGTGGCGCAGGCCG pRALTA_0665 550484 - 550918 + | hypothetical protein pRALTA_0666 550902 - 551156 + | hypothetical protein pRALTA_0667 551173 - 552333 + | hypothetical protein pRALTA_0668 552570 - 553616 + | putative cointegrase resolution protein pRALTA_0669 553600 - 553854 + | hypothetical protein pRALTA_0670 554128 - 554328 + | putative DNA_binding excisionase pRALTA_0671 554334 - 557180 + | putative DNA/RNA helicase, SNF2 family SEQUENCE gi|188591847|ref|NC_010530.1| Cupriavidus taiwanensis, complete genome (length 2502411) TERM 1 565 - 529 - g 86 -6.3 -5.07486 | opp_overlap 526 CATGGCCAAGAAAAA GCGCGGGGAATTCACCG GAA CGGTGGAAGACCGGCGC ATCTCGCTTGGCAAC repA2 89 - 1183 + | RepA replicase protein TERM 2 1220 - 1240 + T 100 -15.5 -5.4505 | opp_overlap 1220 CCTGGACGCAAAAAA GGCAAGCGT GGA ACGCTTGCC TTTTTTGTTGCCCGC TERM 3 1240 - 1220 - T 100 -15.5 -5.08824 | opp_overlap 1220 CCTGGACGCAAAAAA GGCAAGCGT GGA ACGCTTGCC TTTTTTGTTGCCCGC RALTA_B0003 1498 - 1295 - | Cold shock-like protein parA2 1874 - 2533 + | plasmid partition ATPase TERM 4 2588 - 2555 - g 82 -4.3 -5.01811 | overlap 2563 TTACCAAACTAAAAA GCCTGAAAGCCGGCA TGCT CGCCGGCATGGCGGC CGAAAAGAGCCGGAA TERM 5 2580 - 2563 - g 71 -10.5 -3.68853 | overlap 2555 CTAAAAAGCCTGAAA GCCGGCA TGCT CGCCGGC ATGGCGGCCGAAAAG parB2 2536 - 3552 + | plasmid partition protein TERM 6 3594 - 3612 + T 78 -14.6 -2.98823 | CGCTGACACGGGTGC TGTCCCGC CGG GCGGGACA TGTATGTGGGGGGGC TERM 7 3620 - 3647 + T 100 -17 -5.09762 | overlap 3621 GCGGGACATGTATGT GGGGGGGCAGTG GTGA CACTGCCCCCCA TTTTATTTATTCAGG TERM 8 3621 - 3646 + T 100 -20.5 -3.64772 | overlap 3620 CGGGACATGTATGTG GGGGGGCAGTG GTGA CACTGCCCCCC ATTTTATTTATTCAG RALTA_B0006 5250 - 3658 - | putative integrase/recombinase RALTA_B0007 5780 - 6625 + | Putative transcription regulator, LuxR family RALTA_B0008 6891 - 7433 + | conserved hypothetical protein, CheY response regulator receiver domain RALTA_B0009 7529 - 7843 + | hypothetical protein TERM 9 7866 - 7907 + G 100 -24.5 -3.86346 | GGCACGCGCAGCAGT TGTGCAGCGGCACCCGGCG CGAG CGCCCGGTGCCGCTGTGCA TTTGTGCGAGCCTGC TERM 10 8076 - 8044 - g 91 -4.8 -5.40072 | gap 1, overlap 8047 CGGCCGGCAAAAAAA GAAGCCCGC-CGACC GGGG GACCATGCGGGCTTT GAAAACGCTGCCCGG TERM 11 8073 - 8047 - g 82 -6.5 -4.79949 | gap 1, overlap 8044 CCGGCAAAAAAAGAA GCCCGC-CGACC GGGG GACCATGCGGGC TTTGAAAACGCTGCC RALTA_B0010 7840 - 8094 + | hypothetical protein TERM 12 8107 - 8082 - f 76 -9.7 -4.07568 | gap 1 TGCGGGCTTTGAAAA CGCTGCCCGGTG ATG CAT-GGGCAGCG ATCCCGATTGAACAT RALTA_B0011 8327 - 8992 + | Putative phosphatase TERM 13 9260 - 9277 + G 75 -8.3 -4.1552 | overlap 9271 GAAGGGATCCGCGGT GCCGCGC CGGT GCACGGC TTTCTTGCCGCGCTG RALTA_B0012 9125 - 10528 + | undecaprenyl-phosphate galactosephosphotransferase RALTA_B0013 10641 - 10892 + | Putative acyl carrier protein RALTA_B0014 10968 - 11966 + | conserved hypothetical protein; putative seryl-tRNA synthetase RALTA_B0015 11967 - 12947 + | hypothetical protein RALTA_B0016 13033 - 13572 + | hypothetical protein RALTA_B0018 13569 - 14291 + | Putative cyclic nucleotide-binding protein RALTA_B0019 15423 - 14350 - | conserved hypothetical protein, DUF1839 manC 15789 - 17363 + | Mannose-1-phosphate guanylyltransferase TERM 14 17374 - 17419 + F 76 -14 -3.20435 | gap 2, overlap 17392 AATAAGGGGTCGGCG GCCAGTGCATGCGTGCGGCGCC GGCA GGCG-CGCGGGCACGCAC-GGC TTGCTGCGTGATTGG RALTA_B0021 17474 - 19810 + | tyrosine protein kinase TERM 15 19825 - 19813 - f 70 -10.5 -3.54602 | opp_overlap 19821, overlap 19811 CAAACGAGAATAAGA GGCCG CCG CGGCC GGTGAGCGTACCCGT TERM 16 19821 - 19862 + F 93 -20.1 -3.03159 | opp_overlap 19813 19811 AATAAGAGGCCGCCG CGGCCGGTGAGCGTACCCG TTTC TGCGTGCGCTCCCCGGCCG TGTTCCACCGGTTCA TERM 17 20411 - 20372 - g 85 -19.2 -3.03159 | gap 1 GGAACTGGCTCAACA GCGCCGGGCCGGCCGAGGC CCT GCCCCCGCCG-CCTGGCGC GCTCGACGTGCTGGC RALTA_B0022 19909 - 21723 + | putative hydrolase TERM 18 21777 - 21801 + F 76 -5.6 -4.56597 | gap 1, overlap 21776 21780 GCTTTTGAACCGCCT G-GTTCCGCCC TGCT GGGCGGGTCAC TTTTTGGCCGAGCGC ISRta3.1 21934 - 23010 + | Transposase, IS110 family TERM 19 23960 - 23932 - T 72 -12.4 -3.30474 | opp_overlap 23931 23932 CGCCAGAACCACCAA CGCCGCCTTAGC CAGCC GCTTAGGCGACG CGCTTTTTGGTTACT ISRta3.2 25314 - 24238 - | transposase, IS110 family TERM 20 25471 - 25447 - R 76 -5.6 -4.56597 | gap 1, overlap 25448 25451 GCGCTCGGCCAAAAA GTGACCCGCCC AGCA GGGCGGAAC-C AGGCGTTTCAACAGC TERM 21 25584 - 25566 - R 84 -13.8 -3.7282 | overlap 25567 GCATGTCACCAACAA CGCCCCGC CCA GCAGGGCG GAACCAGGCGTTTCA wzc 27969 - 25720 - | tyrosine-protein kinase wzb 28469 - 27966 - | low molecular weight protein-tyrosine-phosphatase TERM 22 28126 - 28099 - G 85 -19.2 -3.04461 | opp_overlap 28096 TAGGGATCGGGAATA TCCGCCTGCGCG GCCT CGCACAGGCGGA AGGTCTTGCCGCGCG RALTA_B0029 29666 - 28473 - | putative exopolysaccharide export outer membrane protein, putative precursor RALTA_B0030 30379 - 29825 - | putative maltose O-acetyltransferase TERM 23 30830 - 30886 + G 88 -15 -3.71284 | gap 1, overlap 30831 30831 30867 CGTTCCCGTTTGCCG TGACCCGGGTGCGCGGCATGGTGCAGC TCGC GC-GCGCCATGCTGCGCCACCGGCGCG TTCTGTTCGTCGGCC TERM 24 30831 - 30885 + G 74 -16.3 -2.82449 | gap 1, overlap 30830 30831 30867 GTTCCCGTTTGCCGT GACCCGGGTGCGCGGCATGGTGCAGC TCGC GC-GCGCCATGCTGCGCCACCGGCGC GTTCTGTTCGTCGGC RALTA_B0031 30625 - 31749 + | Putative glycosyl transferase RALTA_B0032 32471 - 31746 - | putative polysaccharide deacetylase TERM 25 32411 - 32382 - G 73 -12.7 -3.53224 | overlap 32383 CATCTGGCGGCGAAA GCGCGCGGGCGGC ACCC ACAGCCCGCGCCC GGGCGAGCGGCGTGG TERM 26 33745 - 33703 - g 78 -13.9 -3.53563 | overlap 33691 33704 ACATCTGGCGCGAAA TCGTCGCCGACGGCGCCGG GCTGG CCGGCGCCGACACCGCCGC GGGCACCGGCGCGTG TERM 27 33744 - 33704 - g 78 -17.4 -2.71924 | overlap 33691 33703 CATCTGGCGCGAAAT CGTCGCCGACGGCGCCGG GCTGG CCGGCGCCGACACCGCCG CGGGCACCGGCGCGT RALTA_B0033 32745 - 33977 + | putative glycosyl transferase RALTA_B0034 33974 - 35239 + | hypothetical protein TERM 28 35878 - 35910 + G 79 -14.8 -3.32022 | gap 1 ACCCCGCCGGTCAAC GTGCAGCGCCGGCGC ACGC GCGCCGGCAC-GCGC TTCCTGTATGCCGGC RALTA_B0035 35236 - 36426 + | putative glycosyl transferase RALTA_B0036 36420 - 37796 + | hypothetical protein RALTA_B0037 37890 - 39110 + | putative glycosyl transferase RALTA_B0038 39951 - 39172 - | conserved hypothetical protein; putative methyltransferase TERM 29 39981 - 40010 + r 93 -20.8 -3.01712 | opp_overlap 40000 GTGATGAGCATTTGC CGCCTCCGCGGT CAAGCA ACCGCGGAGGCG TCTTGCGCGGCAGGC wcaI 41242 - 39992 - | colanic acid biosynthesis, glycosyl transferase fcl 42258 - 41266 - | GDP-L-fucose synthetase; GDP-4-keto-6-deoxy-D-mannose-3,5-epimerase-4-reductase gmd 43498 - 42287 - | GDP-mannose 4,6-dehydratase; NAD(P)-binding domain TERM 30 43553 - 43518 - R 76 -14 -3.14931 | gap 1, opp_overlap 43516 CTGATCCGTTAGCAA GTGGGGCGACTGTAGCG CCG CGCTGCAG-CGCCGCAC CGTCTGCTACCCCAC RALTA_B0042 44559 - 43606 - | Putative glycosyl transferase TERM 31 44112 - 44058 - G 82 -20 -2.62184 | gap 1, overlap 44043 44071 CGGTGCTGGACAGCA CCACTGCGCACAACGGCCGCGCCCG CGCGGC CCGGCGCGGCGGCTG-GCGCAACGG CTGCCCGAGGAAATC TERM 32 44100 - 44071 - G 70 -12 -3.30441 | overlap 44058 CACCACTGCGCACAA CGGCCGCGCCCG CGCGGC CCGGCGCGGCGG CTGGCGCAACGGCTG TERM 33 44652 - 44630 - R 70 -7.6 -4.07885 | opp_overlap 44650 CACGGCGCGGCAAAA CCCTCAGGCC ACC GGCCTGACCG CCTGGCACGGCGGTT RALTA_B0043 45613 - 44633 - | Putative transcriptional regulator, LuxR family TERM 34 46059 - 46071 + r 71 -4.8 -4.39828 | TTTGATTATCCAATC CCGT ATATG ACGG TTTTATAACCCTATT RALTA_B0044 46649 - 46332 - | Conserved hypothetical protein; putative exported protein RALTA_B0045 46804 - 46679 - | putative lipoprotein RALTA_B0046 47113 - 47319 + | hypothetical protein RALTA_B0047 48659 - 47400 - | putative cyanate transporter (cynX), MFS family TERM 35 47732 - 47682 - G 88 -14.5 -3.81339 | GAGGTACAACGCAAA GCAGCCGCCCAGGCCCGCGCCGC CGATC ACGGCCCAGGCGTGCGGGGCCGC GTCCGGCCACAGCGC RALTA_B0048 49089 - 48652 - | Guanine deaminase TERM 36 49302 - 49267 - H 78 -6.8 -4.62069 | gap 1, overlap 49271 CCGGCAGTGGAAAAA CCAA-TGGATGCCCCGC CAT GCAGGACCCCCACCTGG ACCCCGTGTTGCTTC TERM 37 49874 - 49916 + G 70 -8.3 -3.85698 | gap 2, opp_overlap 49876, overlap 49877 GTATCGCGGCGAGAT GACGCACGCGCTCGACGCCGG CGG CCGGCGCTG-GCGGGTG-GCC TTTGTCAGCGCCAGC RALTA_B0049 49284 - 50183 + | putative HTH-type transcriptional regulator, lysR family RALTA_B0050 50350 - 50162 - | hypothetical protein RALTA_B0051 50647 - 51339 + | Putative phosphoribosyltransferase leuD3 51881 - 51357 - | 3-isopropylmalate dehydratase small subunit leuC3 53220 - 51934 - | 3-isopropylmalate dehydratase large subunit TERM 38 52599 - 52625 + g 85 -21.6 -2.52543 | TCATGCGCTCCTGCA TCGGCAGCGCGG CAA CCGCGCTGCCGG TGAATTCGAGCGCCT RALTA_B0054 54266 - 53217 - | conserved hypothetical protein; putative exported protein, UPF0065 RALTA_B0055 55165 - 54380 - | Putative HTH-type transcriptional regulator, GntR family TERM 39 55299 - 55269 - H 71 -14.1 -2.57132 | gap 2, opp_overlap 55258 55286 55289, overlap 55268 GGTTTTCGCGACAAG GGC-CGGCGCGG-AT GTC ATGCCGCGCCGCGCC GCGGCAGGCGCGGTG TERM 40 55542 - 55578 + H 77 -14.3 -2.87344 | opp_overlap 55532 TCAAGGCTTTCCAAG GTGGCCCCGAGAGGCTG CAG CAACCTCATGGGGCCCC TCTGTCACAGCAATG TERM 41 56110 - 56091 - g 71 -10 -3.68936 | gap 1, overlap 56092 GACCAACTCCAACAA CCGC-ACCG CGA CGGTCGCGG TCGACAAGTCGACCA RALTA_B0056 55849 - 57486 + | conserved hypothetical protein; putative exported protein TERM 42 57554 - 57593 + F 72 -13.5 -2.80816 | gap 1 CGCAGTCATGCCGGC AGGACCG-GCGCCCGCAT CCTGT GTGCGGGCGCCCGGGCCC TGTCATGCCTACGCA TERM 43 57810 - 57844 + G 74 -13.5 -3.34398 | gap 1, overlap 57809 GCCCAACCGCGCGGC GCCCGACACCGTGCCG GCAC CGGCACGG-GCCGCGC TGTTTGCCGGCGCCG RALTA_B0057 57667 - 58098 + | conserved hypothetical protein; putative exported protein RALTA_B0058 58095 - 58796 + | putative bacteriocin processing protein, Peptidase C39 family RALTA_B0059 58807 - 59775 + | conserved hypothetical protein; putative exported protein; contains cristalline beta-sheet repeat similar to EBV nuclear antigen 1 (EBNA-1) and fibroin RALTA_B0060 59851 - 61281 + | conserved hypothetical protein; putative exported protein RALTA_B0061 61499 - 62011 + | conserved hypothetical protein; putative TRANSMEMBRANE PROTEIN TERM 44 62116 - 62137 + F 78 -15.9 -2.79183 | overlap 62135 62136 GCACCCCGGCCCGCA CCGGAACCG CCCC CGGTTCCGG TGTGATGCCGCTGCA TERM 45 62697 - 62654 - g 87 -17.5 -3.28924 | gap 1 CATTGCCGCGCAGAA GGTGCCGC-TGATCGCGCCG CTGAC CGGCGCCATCACGCTGCACC GGCCGGTGAACCGCT RALTA_B0062 62283 - 63419 + | putative branched-chain amino acid ABC transporter, periplasmic component RALTA_B0063 63467 - 64258 + | Gluconate 5-dehydrogenase (5-keto-D-gluconate 5-reductase) RALTA_B0064 65228 - 64323 - | putative transcriptional regulator, LysR family RALTA_B0065 65355 - 66716 + | conserved hypothetical protein, DUF1446 RALTA_B0066 66727 - 67080 + | hypothetical protein RALTA_B0067 67122 - 68087 + | conserved hypothetical protein, UPF0065 TERM 46 68122 - 68139 + F 100 -10.5 -5.00616 | opp_overlap 68122 CCCATGCATGGGAAA CGGGGCC ACGT GGTCCCG TTTTTTACGCAGAAG RALTA_B0068 68274 - 69323 + | putative metallo-beta-lactamase; putative exported protein RALTA_B0069 69803 - 69414 - | putative GCN5-related N-acetyltransferase amn 69999 - 71477 + | AMP nucleosidase TERM 47 71534 - 71510 - T 100 -24.3 -4.27316 | opp_overlap 71510 TCGTGGAATGCAAAA GGCCGGCGCCC AAG GGGCGCCGGCC TTTTTTATCGCGCGG TERM 48 71510 - 71534 + T 100 -24.3 -5.24129 | opp_overlap 71510 TCGTGGAATGCAAAA GGCCGGCGCCC AAG GGGCGCCGGCC TTTTTTATCGCGCGG RALTA_B0071 72196 - 71555 - | putative virulence-related OUTER MEMBRANE SIGNAL PEPTIDE PROTEIN, OmpW family TERM 49 71893 - 71906 + g 70 -3.8 -4.48987 | TGCCGATCTTGTTGC CGTC GAGGTA GACG TTTTGCTTCTGCGGC TERM 50 72292 - 72346 + r 74 -12.7 -3.29511 | gap 2, opp_overlap 72273 72284 AACCAAATGGTGCGC GCGGCGTCGCGAGGGCGCGACAGCGTG CCT CGCGCAG-CGCGGCCTCA-GCCGTCGC TTCTAACCACATGCG TERM 51 72458 - 72475 + r 70 -10.5 -3.59262 | ACCAGGCATGTCGTG GGCGCCC GCAA GGGCGTC TTTCCGGGTGTGCCC TERM 52 72480 - 72511 + r 100 -18 -4.63218 | overlap 72482 GCAAGGGCGTCTTTC CGGGTGTGCCCCGT GGGG GCGGGGCACACCGG TTTTCTTGCGCAGCG TERM 53 72482 - 72509 + r 87 -19.2 -2.62244 | overlap 72480 AAGGGCGTCTTTCCG GGTGTGCCCCGT GGGG GCGGGGCACACC GGTTTTCTTGCGCAG leuA2 74249 - 72540 - | 2-isopropylmalate synthase 2 (Alpha-isopropylmalate synthase 2) (Alpha-IPM synthetase 2) RALTA_B0073 74481 - 74335 - | hypothetical protein RALTA_B0074 74849 - 76207 + | putative lipoprotein TERM 54 76221 - 76266 + T 95 -9.8 -4.58773 | opp_overlap 76234, overlap 76229 76234 AAGGGCTGGTATCCC GCGGCTGA-CGAGACGCCCTCC GGAT GGAGGGCGTTTTGCTTTGC-GC TTTTGCTTTGCTGAG TERM 55 76229 - 76258 + T 83 -16.5 -2.85768 | opp_overlap 76234, overlap 76221 76234 GTATCCCGCGGCTGA CGAGACGCCCTCC GGAT GGAGGGCGTTTTG CTTTGCGCTTTTGCT TERM 56 76234 - 76253 + T 100 -15 -4.564 | opp_overlap 76234, overlap 76229 76221 CCGCGGCTGACGAGA CGCCCTCC GGAT GGAGGGCG TTTTGCTTTGCGCTT TERM 57 76253 - 76234 - T 75 -15 -2.78384 | opp_overlap 76234 76229 76221 CCGCGGCTGACGAGA CGCCCTCC GGAT GGAGGGCG TTTTGCTTTGCGCTT TERM 58 76629 - 76599 - T 100 -7.5 -5.24416 | gap 1 TAAGGAGAAGAAAAA GCGCGCGTCA-GCG CTTG CGCACGAAGCGCAC CACCTGCTCGGCAGG RALTA_B0075 76917 - 76606 - | conserved hypothetical protein, putative transmembrane protein feoB 78788 - 76932 - | Ferrous iron transport protein B feoA 79114 - 78803 - | Ferrous iron transport protein A TERM 59 79486 - 79509 + r 100 -14.6 -5.14163 | opp_overlap 79486 ACGCGTACTTCACAA GCCATCGGTC CCTG GACCGGTGGC TTTTTCTTGATGGCT TERM 60 79509 - 79486 - R 72 -12.4 -3.32963 | opp_overlap 79486 ACGCGTACTTCACAA GCCATCGGTC CCTG GACCGGTGGC TTTTTCTTGATGGCT RALTA_B0078 80415 - 79480 - | putative transcriptional regulator, LysR family RALTA_B0079 80537 - 82339 + | Acyl-CoA dehydrogenase TERM 61 82698 - 82661 - g 79 -14.8 -3.28712 | overlap 82633 82684 GGTGGTGGTCGAGAA CCGCGCCGGCGCCG GCGGCAATAT CGGCGCCGAAGCGG TGGCGCGCGCCGAGC RALTA_B0080 82464 - 83438 + | conserved hypothetical protein, UPF0065 TERM 62 84395 - 84415 + G 73 -16.1 -2.64616 | ATACGCTGGTGGCCG CCGGCGTGC CGT GCGCGCCGG TGCTGTCGGTGGCGG RALTA_B0081 83461 - 84603 + | putative deshydratase, CoA-transferase; L-carnitine dehydratase/bile acid-inducible protein family TERM 63 84703 - 84680 - T 76 -6.6 -4.45544 | CTCCACGAAGTAAAA GCCGTCGCAC TTGC ATACGCCGGC CCTCTCCCCCAACCC glcA 86493 - 84772 - | glycolate permease (LctP family) RALTA_B0083 88190 - 86745 - | putative electron transport protein, iron-sulfur cluster binding prot RALTA_B0084 88888 - 88187 - | conserved hypothetical protein, DUF162 RALTA_B0085 89667 - 88885 - | conserved hypothetical protein, DUF224 TERM 64 89964 - 90009 + G 75 -16.2 -2.87132 | gap 3, opp_overlap 89944, overlap 89991 89992 CGCGAGGCCATCCAG CGGCTG-GCCGCGCGCGGC-CTG CTG CAGAGCCG-GCGCGGCGCGGGCG TCTATGCCACCGACC RALTA_B0086 89793 - 90512 + | putative transcriptional regulator, GntR family RALTA_B0087 91763 - 90726 - | conserved hypothetical protein, putative Membrane protein eutB 91999 - 93381 + | ethanolamine ammonia-lyase, heavy chain eutC 93391 - 94206 + | ethanolamine ammonia-lyase, light chain TERM 65 94272 - 94237 - T 100 -24.8 -5.0925 | GCTGAAAACGAAAAA CGGCCACCACGCGGGC CGCG ACCCGCATGGTGGCCG TTGCCGTCGCACCAC RALTA_B0090 94761 - 94288 - | conserved hypothetical protein, YbaK/prolyl-tRNA synthetase associated domain RALTA_B0091 95763 - 94846 - | putative transcriptional regulator, LysR family TERM 66 95804 - 95780 - R 84 -11.3 -4.11216 | opp_overlap 95782, overlap 95782 GGGTGATCGGGAAAA GACGGGGGCGG TGA CAGCCCCCGTA TATTGCCATGCCGGC TERM 67 95782 - 95802 + r 75 -13.9 -3.08813 | opp_overlap 95780 95782 GTGATCGGGAAAAGA CGGGGGCGG TGA CAGCCCCCG TATATTGCCATGCCG TERM 68 95802 - 95782 - R 81 -13.9 -3.65542 | opp_overlap 95782, overlap 95780 GTGATCGGGAAAAGA CGGGGGCGG TGA CAGCCCCCG TATATTGCCATGCCG kgtP 97156 - 95843 - | alpha-ketoglutarate permease (MFS family) TERM 69 96390 - 96376 - G 70 -3.4 -4.4017 | overlap 96377 TGAAGGTGTAGAAAA TCAGCG AGC CGCCGG CGGTGTAGCCCAGCA TERM 70 96684 - 96674 - G 91 -8.2 -4.94902 | opp_overlap 96681, overlap 96675 96676 GAACGACGAGAAAAA GCCG CGC CGGC CGCGCAACGCCACCT TERM 71 97396 - 97410 + H 70 -10 -3.64703 | CCACCCCCTGCGATG TGCTGC GGC GCAGCA TTTCCGTGAGCGGCG TERM 72 97625 - 97637 + H 74 -4.7 -4.56978 | GCTCGCTGCGCCGAT GGCTG TGC CTGCC TTTGTTCTTTGCCGG RALTA_B0093 97639 - 97944 + | hypothetical protein fpr 98111 - 98905 + | FERREDOXIN--NADP REDUCTASE OXIDOREDUCTASE fumC 100369 - 98963 - | fumarase C (fumarate hydratase) RALTA_B0096 100508 - 101392 + | putative transcriptional regulator, LysR family RALTA_B0097 101776 - 101426 - | conserved hypothetical protein, DUF326 TERM 73 101696 - 101750 + g 81 -10.1 -4.2558 | gap 4, overlap 101697 GGCCGCGCACTTCAG GGCCG-CCGC--CGCCG-CGGCATTGC AGGCG GCAATGCAGTCGGCGTAGCGGGCGGCG TTTTCCTGCACGGTG TERM 74 101697 - 101749 + g 72 -13.6 -3.15027 | gap 4, overlap 101696 GCCGCGCACTTCAGG GCCG-CCGC--CGCCG-CGGCATTGC AGGCG GCAATGCAGTCGGCGTAGCGGGCGGC GTTTTCCTGCACGGT TERM 75 101816 - 101858 + H 70 -12.8 -2.8294 | gap 2, opp_overlap 101810, overlap 101814 TGGATGGAACCGGCA TGCCCCGGAGCGGCAGGCGG CGCAT CTGCGTGC-GCTC-GGGGCA TCGTTATCCACAATA RALTA_B0098 102097 - 102471 + | hypothetical protein RALTA_B0099 104480 - 102465 - | putative diguanylate cyclase (GGDEF domain) with PAS sensor domain and HAMP domain TERM 76 103387 - 103336 - G 73 -15.9 -2.50816 | gap 3, overlap 103314 103335 TCGGTATCGACGAAG GCCAGC-AGCGACGGCAGCGTGTCGG TCA CCG-CGCGCAGCCGCCGCTCGCT-GC GGTCCAGCGCCTGGC TERM 77 103676 - 103623 - G 81 -12.5 -3.87815 | gap 4, overlap 103580 GGCCATGCCGAGAAA GCGCTGCTGCATCTGCCGCAGCGGGGC GTAG GCCTCGC-GCGCC-G--GCAGCAGCGC CACCAGTTCCCAGCC TERM 78 105324 - 105344 + G 77 -14.7 -3.1637 | overlap 105321 CCCGAAGCCGTGGCG CGCCAGCGC GGT GCGCTGGTG TTCCTGCCGGTCTAT TERM 79 105629 - 105679 + G 71 -9.5 -3.78775 | gap 1 CCGCAGCTGGACGCT GCGCGCCGCCACCCGT-CCCGCCT TCGA AGCCGCGCATGGGCCGCGGCCCGC TTTGCTGGTGCCGGC RALTA_B0100 104742 - 107936 + | putative diguanylate cyclase (GGDEAF) and c-di-GMP phosphodiesterase (EAL domain) with Chase and PAS domains. TERM 80 108784 - 108808 + G 70 -9.1 -3.85698 | overlap 108783 CGAGATCTACGAGCA GCCGGCATCGG CCT TCGTCGCCGGC TTTCTCGGCCAGGCC RALTA_B0101 108068 - 109180 + | putative ABC transporter, ATP-binding component TERM 81 109312 - 109336 + G 72 -3.4 -4.56775 | gap 1, overlap 109313 109325 GCCGGGCTTGCCGCT G-GCCTGCTGC TGCC GCTGCTGGCGC TTTTTCGCCAGGCCT TERM 82 109781 - 109831 + G 74 -15.2 -3.01791 | opp_overlap 109759 GCGCCATGGGTGCGG GGCCGTGGCGCACCTTCCGCACCG TGA CGCTGCCGGGCGCGCGCCAGGGCC TGTTCGCCGCGGCAT TERM 83 110862 - 110907 + G 76 -14 -3.42658 | gap 3, overlap 110865 GCTGCACGCGCTGTC AGC-CGGCTGGCTGCGCC-GCGC GCA GCGCTGGCGC-GCCGGCTGAGCC TTCCGTTTTGTCATC TERM 84 110865 - 110912 + G 84 -10.4 -4.4648 | gap 1, overlap 110862 GCACGCGCTGTCAGC CGGCTGGCTGCGCC-GCGCGC AGCGCTG GCGCGCCGGCTGAGCCTTCCG TTTTGTCATCCCGCT RALTA_B0102 109180 - 110904 + | putative ABC transporter, inner membrane component RALTA_B0103 110968 - 112002 + | putative ABC transporter, periplasmic binding component TERM 85 112040 - 112003 - T 71 -6.1 -4.27512 | gap 1, overlap 112000 GCGGAGAAGAAATAA GAGCCG-TTGGGCCGGCG CCG CGGCGGCACGAGCAGCCC GCAGAAACGGGTACG RALTA_B0104 112430 - 112101 - | conserved hypothetical protein; putative transmembrane protein TERM 86 112598 - 112572 - H 100 -16.6 -5.52986 | opp_overlap 112575, overlap 112575 ACCGGATCAAAAAAA GAAGCCGCCAGG AGG CCTGGCGGCTTG TCGGGAATGCGTCGG TERM 87 112575 - 112595 + H 93 -18.3 -3.30243 | opp_overlap 112575 112572 GGATCAAAAAAAGAA GCCGCCAGG AGG CCTGGCGGC TTGTCGGGAATGCGT TERM 88 112595 - 112575 - H 100 -18.3 -4.8487 | opp_overlap 112575, overlap 112572 GGATCAAAAAAAGAA GCCGCCAGG AGG CCTGGCGGC TTGTCGGGAATGCGT TERM 89 112628 - 112643 + H 74 -4.7 -4.6038 | opp_overlap 112628 GAGGGGTCAATTAAC TCTGG CGCAGA CCAGA TTTTAATTTAATCTA TERM 90 112878 - 112827 - H 73 -11.5 -3.6682 | TGCCAGCCAGGCAAA CGATGCTGC-CGGGCCACAGGTCCG AATC CGG-CTTGCGGCCGGCGCTGCACCG GCGTCCAATGCGGCA TERM 91 112965 - 112989 + G 76 -13.6 -3.39449 | gap 1 GCTCCGCCTGCTGGC GCTGGCCGCCC TCTG GGGCGGC-AGC TTCCTCTTCATCCGC TERM 92 113251 - 113267 + G 71 -2.1 -4.56775 | overlap 113246 CCGCTGATGGGCGTG GCAATCG GCG CGCTGGC TTTTTCGGAACCGCT TERM 93 113348 - 113358 + G 72 -8.2 -4.07885 | overlap 113340 TGCTGACGCGCACCG GGCC GGT GGCC TTTTCCACGGAGGTC RALTA_B0105 112933 - 113862 + | conserved hypothetical protein, DUF6; putative transmembrane protein RALTA_B0106 114271 - 114014 - | hypothetical protein fur2 114803 - 114315 - | transcriptional repressor of iron transport (Fur family) RALTA_B0108 115130 - 114864 - | hypothetical protein TERM 94 114987 - 114969 - G 81 -3 -5.06414 | CGCGCGGAATAAAAA GGTGGC CTGGCTT GCCGCC GGAAGACGCGATCGG TERM 95 115074 - 115056 - G 78 -12.4 -3.78775 | CTGGCTACTACCAAA CGCTCCGC GTG ACGGAGCG GTCCCCACAAAAGTC RALTA_B0109 115528 - 116592 + | putative outer membrane porin TERM 96 116630 - 116659 + F 100 -13.6 -4.60487 | opp_overlap 116633, overlap 116633 CATTGCCGTACCTTG AAAGCACGCGCC CTGGCA GGCGCGTGCTTC TTTTTCCGCATGATC TERM 97 116656 - 116633 - f 91 -16 -3.57144 | opp_overlap 116630 116633 TGCCGTACCTTGAAA GCACGCGCCC TGGC AGGCGCGTGC TTCTTTTTCCGCATG TERM 98 116633 - 116656 + F 100 -15.3 -4.41633 | opp_overlap 116633, overlap 116630 TGCCGTACCTTGAAA GCACGCGCC CTGGCA GGCGCGTGC TTCTTTTTCCGCATG RALTA_B0110 116764 - 118017 + | hypothetical protein TERM 99 119282 - 119243 - g 72 -13.7 -3.16944 | gap 2, opp_overlap 119269, overlap 119241 ACGACGAAGTGAAGA TCGTCCATCCCGGCACCGA GGAT CCGGTGCCG-GACGG-CGA GGCCGGCGAGGCGCT entE 118108 - 119808 + | 2,3-dihydroxybenzoate-AMP ligase, Enterobactin synthetase component E, AMP-dependent synthetase and ligase RALTA_B0112 119810 - 120691 + | putative Glyoxalase/bleomycin resistance protein/dioxygenase RALTA_B0113 120688 - 121845 + | putative monooxygenase, FAD/NAD(P)-binding domain TERM 100 121921 - 121945 + G 74 -12.8 -3.54543 | GGGGCGACTGCGATC CGGCCGGGGT CGTCT ACACCGGCCG TTTCACGGACTACCT RALTA_B0114 121842 - 122297 + | conserved hypothetical protein, putative thioesterase RALTA_B0115 122307 - 123089 + | putative Asp/Glu racemase TERM 101 123108 - 123097 - g 72 -3.6 -4.57353 | overlap 123101 TGGCATGACACAAAA GCGA CCGC CCGC AGAGACGGTAACCAT RALTA_B0116 123086 - 124402 + | putative transporter, Major facilitator superfamily TERM 102 124466 - 124433 - f 72 -7.4 -4.15565 | gap 1, opp_overlap 124439, overlap 124436 CGCAGCACGGTAAAA TTAC-CAGGGCCGCA ATTTA TGCGGCCCTGTGTCC ACGACCGGTCAGACC TERM 103 124462 - 124436 - f 75 -13.7 -3.10098 | opp_overlap 124439, overlap 124433 AGCACGGTAAAATTA CCAGGGCCGCA ATTTA TGCGGCCCTGT GTCCACGACCGGTCA TERM 104 124439 - 124459 + F 74 -14 -2.87132 | opp_overlap 124436 124433 ACGGTAAAATTACCA GGGCCGCA ATTTA TGCGGCCC TGTGTCCACGACCGG TERM 105 125169 - 125186 + G 73 -7.7 -4.10925 | overlap 125140 CAGTATCCGGGGGCG CGCTTTG TCAG CAAGGCG TTTTCGCGGCTGTCT RALTA_B0117 124485 - 125309 + | putative transcriptional regulator, TetR C_term domain TERM 106 126353 - 126380 + G 76 -7.7 -4.36914 | gap 1, opp_overlap 126353, overlap 126354 126354 TTGGCACCTATCCAA TG-GCGCTTGGC CGCGA GCCGAGCGCACG TTTTGTGCAGGGCGA RALTA_B0118 125479 - 126447 + | conserved hypothetical protein, UPF0065 RALTA_B0120 128170 - 127580 - | hypothetical protein rnz 126466 - 127647 + | zinc phosphodiesterase, putative tRNA 3' processing RNase Z homolog RALTA_B0121 128467 - 128817 + | conserved hypothetical protein; putative exported protein TERM 107 128892 - 128882 - g 72 -3.2 -4.66163 | ACCCGTATCGAAAAA GTGC TGT ACAC CGGCAAGGTCCATAT RALTA_B0122 128864 - 129283 + | Organic hydroperoxide resistance protein, osmC family TERM 108 129317 - 129289 - T 74 -13.1 -3.33696 | opp_overlap 129291, overlap 129290 GCTGGTCTGAAGCAA GGGGGCTGCCTCA TGG TGAGGCAGCCCTT CGATCCTGCTGCGGC TERM 109 129316 - 129290 - T 80 -16.6 -2.60075 | opp_overlap 129291, overlap 129289 CTGGTCTGAAGCAAG GGGGCTGCCTCA TGG TGAGGCAGCCCT TCGATCCTGCTGCGG TERM 110 129291 - 129315 + T 93 -20.1 -3.10715 | opp_overlap 129290 129289 TGGTCTGAAGCAAGG GGGCTGCCTCA TGG TGAGGCAGCCC TTCGATCCTGCTGCG RALTA_B0123 129457 - 129347 - | putative lipoprotein RALTA_B0124 130190 - 129492 - | putative amidohydrolase TERM 111 129543 - 129561 + g 74 -13.8 -3.30441 | overlap 129536 CGATGCGTGCGGCGT GGCGGTGC GTT GCGCCGCC TTGTGCACCATGGTG RALTA_B0125 130543 - 130827 + | putative permease TERM 112 132196 - 132251 + G 74 -12.4 -3.61715 | gap 1 CGTGCGCGCTGCTGG CGCTGTGCCGGCCCACGCGCGGCATGT GGC GCGCGCAGC-TGTGGGCGGGTGCGGCG TTGTTCGGCACCATC RALTA_B0126 130827 - 132482 + | conserved hypothetical protein, PepSY-associated TM helix RALTA_B0127 132479 - 132829 + | hypothetical protein RALTA_B0128 137302 - 132866 - | putative multi-site Sensor histidine kinase TERM 113 137070 - 137022 - G 72 -6.6 -4.30719 | gap 1, opp_overlap 137058, overlap 137018 137027 137031 TCGTTGTAGAAGAAA TGCAAGGCATCGCCCCAGCCGAT CCAG ATGGGCTGGCGCGAGGTCA-GCA TGATGCGGATCGCCG RALTA_B0129 137874 - 137449 - | conserved hypothetical protein, PRC-barrel domain TERM 114 138039 - 138024 - R 78 -3.2 -5.00616 | overlap 138027 138031 CGCGGCTTGAAAAAA CAACGC ATCC GCACTG GCGCCGCGGGGGTGT TERM 115 138072 - 138027 - R 76 -6 -4.61482 | gap 2, overlap 138024 138031 GGCTTGAAAAAACAA CGCATCCGCA--CTGGCGCCGC GGGG GTGTCGCCAGCCTGCGGCAGCG GGATTGGGACGAGCG fusA2 140286 - 138166 - | protein chain elongation factor EF-G, GTP-binding (ribosomal translocase) TERM 116 139842 - 139825 - G 71 -2.5 -4.59773 | overlap 139827 CTGCACGCGGAAAAA GTCGGCG CCAA CGCGGTC CATCTTGTTGACGAA RALTA_B0131 140581 - 141210 + | putative Response regulator receiver, LuxR family RALTA_B0132 142059 - 141286 - | putative TRANSCRIPTIONAL REGULATOR, GntR family TERM 117 141934 - 141960 + g 70 -13.1 -3.33737 | gap 1, overlap 141916 GCCGGGCTTGAGCTG GCCCT-GGCGAA TGTC TTCGCCGAGGGC TTGTACGACTTCCTC gudD 142243 - 143577 + | (D)-glucarate dehydratase 1 RALTA_B0134 143661 - 144683 + | conserved hypothetical protein; putative exported protein, UPF0065 TERM 118 144771 - 144717 - f 81 -9.8 -4.12738 | gap 1, overlap 144718 144720 CCATACCAAAGCAAA GCACCGAC-CGCGCCGGCCCAGCAC TGCATC GTGCCGCGCCGGCGCGCGCCTTCGA CAGGAGACCCCAGCA TERM 119 144770 - 144718 - f 71 -13.3 -3.0692 | gap 1, overlap 144717 144720 CATACCAAAGCAAAG CACCGAC-CGCGCCGGCCCAGCAC TGCATC GTGCCGCGCCGGCGCGCGCCTTCG ACAGGAGACCCCAGC TERM 120 144908 - 144937 + G 72 -13.6 -3.1505 | gap 1 GCCCAACCGCCCGAT CCGCCTGGTGGTG CCGTA CACCGCC-GGCGG TTCGTCGGACATCAT TERM 121 145262 - 145236 - g 70 -12.2 -3.35073 | opp_overlap 145235 145232 145231 ACCAGCGTGAAGGAA CTGGTGGCGCTG TCA CAGCGCAGCCAG CTCAATTTCGCCGTG RALTA_B0135 144786 - 145781 + | conserved hypothetical protein, UPF0065 TERM 122 145803 - 145827 + T 100 -10.7 -6.02919 | opp_overlap 145803 TTGCCGAAGGTAGAA CGGCTCGCA CGGGGAA TGCGGGCCG TTTTTTTGTTTCTCG TERM 123 145917 - 145899 - T 100 -13.1 -4.77757 | GTGCAAAAACGAAAA GCCCCGC ACCAG GCGGGGC CCATCTGAGCAGCCC aldH 147543 - 145936 - | NADP-dependent aldehyde dehydrogenase TERM 124 147527 - 147498 - G 95 -18.5 -3.60792 | opp_overlap 147497 TTTGGAACGGGGAAA CCGGCCGGAGGGC ATGC GCCCCGCGGCCGG CTCTTCGGAATGCCA RALTA_B0137 148492 - 147578 - | 5-dehydro-4-deoxyglucarate dehydratase (KDGDH) TERM 125 149066 - 149046 - g 71 -9.6 -3.72576 | overlap 149047 TGGGGGTGCAGGAAA CCGGGCCG TCGAT CGGCGCGG TGCTGGCCGCGGTCA TERM 126 149850 - 149821 - g 85 -17.9 -3.20723 | gap 1 CTTCGACGAATGGAA GCGG-CGGCACGGC GCC ACCGTGCCGCCCGC CGTCACCCATCCCGG RALTA_B0138 148910 - 149890 + | putative sulfurtransferase, DedA and GlpE domains RALTA_B0139 150869 - 149901 - | conserved hypothetical protein, DUF1177 TERM 127 150905 - 150871 - R 76 -12.6 -3.53091 | opp_overlap 150874 150875 ATGGCTTTCTCCAAA GTTTGCCCCGGCCGCG CGG CGCGGGCGGGGCGTTC TACAAATCGGTCAGA TERM 128 150874 - 150902 + r 95 -19.5 -3.31461 | opp_overlap 150871, overlap 150875 GCTTTCTCCAAAGTT TGCCCCGGCCGCG CGG CGCGGGCGGGGCG TTCTACAAATCGGTC TERM 129 150875 - 150901 + r 91 -20.8 -2.58663 | opp_overlap 150871, overlap 150874 CTTTCTCCAAAGTTT GCCCCGGCCGCG CGG CGCGGGCGGGGC GTTCTACAAATCGGT RALTA_B0140 152052 - 150916 - | putative outer membrane porin TERM 130 152098 - 152147 + r 100 -14.9 -4.29327 | gap 1, opp_overlap 152103 152104 152105, overlap 152104 152105 152107 TTCTCCTCCAGAAGG CAAAAGGCGGCCGCGCGGGCGGCG CAA CGCGGCCCGCGGGGCTGG-TGTTG TTTGTATTGGTTGTG TERM 131 152143 - 152103 - R 100 -13.7 -4.3208 | opp_overlap 152098 152104 152105 152107, overlap 152104 152105 CTCCAGAAGGCAAAA GGCGGCCGCGCGGGCGGCG CAA CGCGGCCCGCGGGGCTGGT GTTGTTTGTATTGGT TERM 132 152104 - 152142 + r 100 -19.4 -3.70022 | opp_overlap 152104 152103 152105, overlap 152098 152105 152107 TCCAGAAGGCAAAAG GCGGCCGCGCGGGCGGCG CAA CGCGGCCCGCGGGGCTGG TGTTGTTTGTATTGG TERM 133 152142 - 152104 - R 89 -17.2 -3.18766 | opp_overlap 152098 152104 152105 152107, overlap 152103 152105 TCCAGAAGGCAAAAG GCGGCCGCGCGGGCGGCG CAA CGCGGCCCGCGGGGCTGG TGTTGTTTGTATTGG TERM 134 152105 - 152141 + r 100 -22.9 -2.80929 | opp_overlap 152105 152104 152103, overlap 152104 152098 152107 CCAGAAGGCAAAAGG CGGCCGCGCGGGCGGCG CAA CGCGGCCCGCGGGGCTG GTGTTGTTTGTATTG TERM 135 152141 - 152105 - R 91 -20.7 -2.50778 | opp_overlap 152104 152098 152105 152107, overlap 152104 152103 CCAGAAGGCAAAAGG CGGCCGCGCGGGCGGCG CAA CGCGGCCCGCGGGGCTG GTGTTGTTTGTATTG TERM 136 152107 - 152139 + r 100 -21.9 -2.93099 | opp_overlap 152105 152104 152103, overlap 152105 152104 152098 AGAAGGCAAAAGGCG GCCGCGCGGGCGGCG CAA CGCGGCCCGCGGGGC TGGTGTTGTTTGTAT pepE2 153131 - 152376 - | (alpha)-aspartyl dipeptidase E (Peptidase S51 family) sufS 154346 - 153162 - | Cysteine desulfurase (Aminotransferase class V) RALTA_B0143 156008 - 154401 - | putative Oligopeptide transporter, OPT superfamily TERM 137 155233 - 155263 + g 78 -12.4 -3.72695 | TCGATGGTGCGCGCG TCGGCCGCGGGGGC GTG GCGCGCGCGGCGGA TTTCATGGGCGACCT RALTA_B0144 156786 - 156073 - | putative transcriptional regulator, IclR RALTA_B0147 160537 - 159782 - | putative transcriptional regulator, IclR TERM 138 160768 - 160714 - H 84 -17 -2.78868 | overlap 160706 160711 160765 TAACATAGCGAACCA TCCGCATTGCAGCGGGCGGCGCACGC GTG GCGTACGCCGCCCGCCAGACCACGAC ATGAATCGCGACTCT RALTA_B0148 160769 - 161809 + | putative monooxygenase with luciferase-like ATPase activity, homolog of E.coli yhbW TERM 139 163195 - 163218 + G 81 -10.2 -4.38712 | gap 1, overlap 163195 CAAGGCGCTGCACCA GG-CCAGCGCG CGC CGCGCCGGGCC TTTTGTCGCCGTGAA acoR 162044 - 164050 + | Acetoin catabolism regulatory protein, sigma54 interaction domain RALTA_B0150 165008 - 164019 - | putative transcriptional regulator, LysR domain RALTA_B0151 166043 - 165081 - | putative amidohydrolase 2 TERM 140 165979 - 165924 - G 95 -9.5 -4.8622 | overlap 165925 GTCGCCAAGGAAAAA CGCGGCCGGCTCGCAGGCGTCCTGC AGCCAG GGATAATGCCCGCGATCCAGCCGCC ACAGGTGGTGATGGG TERM 141 165978 - 165925 - G 73 -13 -3.5125 | overlap 165924 TCGCCAAGGAAAAAC GCGGCCGGCTCGCAGGCGTCCTGC AGCCAG GGATAATGCCCGCGATCCAGCCGC CACAGGTGGTGATGG RALTA_B0152 167344 - 166040 - | putative transporter, Major facilitator superfamily TERM 142 166816 - 166842 + g 70 -14.5 -2.72991 | gap 1, opp_overlap 166790 AGTCGAGCGCGGCGA TCACCAGCCCCG ACAG CGGGGC-GGTGA TCATTCCCGCTATCG TERM 143 167097 - 167060 - G 73 -9.8 -3.90318 | gap 2, opp_overlap 167058, overlap 167029 CGACCAGGCGATAAA CCTGCGGC-CGCT-GCCG CGCA CGGCCAGCTTGCCGCCGG GGATTTGCAGGAACA RALTA_B0153 168354 - 167365 - | hypothetical protein RALTA_B0154 168680 - 168147 - | hypothetical protein acoX 168720 - 169787 + | Acetoin catabolism protein X, ATP-NAD kinase TERM 144 170415 - 170405 - g 70 -8.2 -3.8211 | CGTGATCGAGAACAA CGGC TAC GCCG AATCGACTTCGCGCG acoA 169821 - 170852 + | Acetoin:2,6-dichlorophenolindophenol oxidoreductase alpha subunit acoB 170888 - 171904 + | Acetoin:2,6-dichlorophenolindophenol oxidoreductase beta subunit acoC 171904 - 173019 + | Dihydrolipoyllysine-residue acetyltransferase component of acetoin cleaving system TERM 145 173028 - 173057 + F 95 -16.3 -3.89346 | opp_overlap 173004, overlap 173029 CGGCTGACGCCGCGG CGCGGGCGGCCGC ATGC GCTGCCGCCCGCC TTTGTCGAATCCACC TERM 146 173029 - 173056 + F 93 -19.8 -2.93393 | opp_overlap 173004, overlap 173028 GGCTGACGCCGCGGC GCGGGCGGCCGC ATGC GCTGCCGCCCGC CTTTGTCGAATCCAC RALTA_B0159 173094 - 173435 + | acetoin catabolism operon, putative enzyme involved in degradation of aromatic compounds RALTA_B0160 173482 - 174243 + | conserved hypothetical protein, aco operon RALTA_B0161 174971 - 174240 - | conserved hypothetical protein, putative exported protein TERM 147 175114 - 175092 - R 100 -12.7 -5.75342 | overlap 175094 GCGCGCCAAAAAAAA TCGCGGCCC ACAGG GGGCCGCAA ATCGGGAATGCGAGG TERM 148 175112 - 175094 - R 71 -13.1 -3.01966 | overlap 175092 GCGCCAAAAAAAATC GCGGCCC ACAGG GGGCCGC AAATCGGGAATGCGA RALTA_B0162 176051 - 175230 - | hypothetical protein TERM 149 176066 - 176083 + r 90 -2.7 -5.51353 | AGGCATCCCCCCGCT CGCTT CGTTATTT AAGCG TTTTTATTGTTTTTG TERM 150 176140 - 176150 + r 76 -8.2 -4.11484 | opp_overlap 176138, overlap 176128 CATGGCCGAGAACGT CGGC ACG GCCG TTTTGACCGCTTCCC TERM 151 176333 - 176310 - R 100 -11.7 -5.63517 | CCGCCAAAGAAAAAA GCCGGACAC GATGAA GTGCCCGGC CAACCCATTTGCTGA RALTA_B0163 176846 - 176436 - | putative hydroperoxide resistance protein, OsmC-like protein TERM 152 176860 - 176874 + H 76 -7 -4.42386 | opp_overlap 176851 176850, overlap 176861 AAAGAGTGGCCCAGC GGGCCG GAA CGGCCA TTTTATAAGTAGCCG TERM 153 177030 - 177004 - H 70 -10 -3.65812 | overlap 177005 CCCCTCGCAACACAA CGCGGCTCCTGC AAG GCAGGCGCAGCA AGGGTTGCGGGGTCG TERM 154 179185 - 179213 + H 77 -13.3 -3.66178 | opp_overlap 179185, overlap 179191 TGGTTGGCCGCCAAA TGCAAGCGCTTAA GAC TTGAGCGTTTGCA TTTGGCATTGCCAAG TERM 155 179932 - 179921 - H 72 -7.2 -4.2354 | GAAAGGCGAAAAGAA CCCC GGGA GGGG AGTGAAATAGATCCT TERM 156 182558 - 182594 + H 100 -20.4 -4.59773 | gap 1, opp_overlap 182563, overlap 182563 CAGGCTCTTATTGTG CAAAACCCCTCGACAGC GTGT GCTG-CGAGGGGTTTTG TTTTTGGCGCTCGCC TERM 157 182563 - 182589 + H 100 -14.5 -5.26119 | gap 1, opp_overlap 182563, overlap 182558 TCTTATTGTGCAAAA CCCCTCGACAGC GTGT GCTG-CGAGGGG TTTTGTTTTTGGCGC TERM 158 182589 - 182563 - H 93 -14.5 -4.09685 | gap 1, opp_overlap 182563 182558 TCTTATTGTGCAAAA CCCCTCGACAGC GTGT GCTG-CGAGGGG TTTTGTTTTTGGCGC RALTA_B0166 182737 - 182946 + | putative endonuclease; COG2827 domain TERM 159 182960 - 182989 + T 100 -25.1 -3.72588 | opp_overlap 182960 GAAGTGAAGAAAAAA CGGCCCGCATCGC GCTT GCGATGCGGGCCG TTTCACTCTGGCTTG TERM 160 182989 - 182960 - T 100 -25.1 -5.5074 | opp_overlap 182960 GAAGTGAAGAAAAAA CGGCCCGCATCGC GCTT GCGATGCGGGCCG TTTCACTCTGGCTTG ohrB 183432 - 183010 - | Organic hydroperoxide resistance protein ohrB, osmC family ohrR 183960 - 183484 - | Organic hydroperoxide resistance transcriptional regulator, MarR family degP 184071 - 185606 + | PERIPLASMIC PROTEASE; contains two PDZ domain RALTA_B0170 185905 - 186210 + | hypothetical protein RALTA_B0171 187965 - 186382 - | putative transporter, Major facilitator superfamily MFS RALTA_B0172 188474 - 187962 - | putative transcriptional Regulator, MarR family TERM 161 188132 - 188176 + g 74 -12 -3.53811 | gap 1, overlap 188133 GGCTCAACTCCAGGC TGCGCCGGTCGCTG-GCCGAC GCGC GCCGGCGCAGCAGCCCGCGCG TTTCCAGGCCATCCA RALTA_B0173 190507 - 188537 - | putative protease, Transglutaminase motif RALTA_B0174 191445 - 190504 - | conserved hypothetical protein, DUF58 TERM 162 191602 - 191558 - R 71 -12.8 -3.05463 | gap 2 ATGGCGCTCAGGGAA TCGCCA-CGCCGGCCAGC-AGC GCG GCCAGCTGGCCGTCGACGGCGG CGTGGCCGCCGGCCC RALTA_B0175 192476 - 191550 - | putative ATPase, MoxR-like TERM 163 192075 - 192048 - G 89 -3.3 -5.31275 | gap 1, overlap 192049 GGCGATGACAAAAAA CGGCGAC-GGCA GCGCA TGCGTGGCGCCG TCATGGGTCACCTGC RALTA_B0176 192739 - 193557 + | putative Phytanoyl-CoA dioxygenase RALTA_B0177 194413 - 193574 - | putative TRANSCRIPTIONAL REGULATOR, IclR family TERM 164 194034 - 194005 - G 85 -18.7 -3.02471 | opp_overlap 194001 194000 CGCGCAGCACATAGA CGATCTCGGTGCC GTCC AGCACCGAGATCG AGCAGCTTTCATGGA RALTA_B0178 196011 - 194530 - | putative MULTIDRUG RESISTANCE PROTEIN, Major Facilitator Superfamily TERM 165 195624 - 195589 - G 74 -13.2 -3.37796 | gap 1, overlap 195590 CGCCAGCATCGAGAA CGCGCCGCCGCCGAAGC GCA GCATCAGCGG-GCCGCG CTCGGCCGGCGTCGA RALTA_B0179 196172 - 197179 + | putative transcriptional regulator, LysR TERM 166 197193 - 197162 - T 72 -12.3 -3.28712 | gap 1, opp_overlap 197184 CTGGCGCCGGGAGAA GCCCGCACGGCG GGTTGAGGT CGCCG-GCGGGC GCAGGGTCCCGCGCC RALTA_B0180 197779 - 197219 - | conserved hypothetical protein; putative membrane protein; yggT family TERM 167 197949 - 197922 - H 71 -14 -2.57132 | opp_overlap 197940 197945, overlap 197921 GGCGGCCCCTATAAT TGCGAGCGCCCC GCAC GGGGCGCGCGCG GATTGCCGCGCCTTC TERM 168 197940 - 197961 + H 70 -10.1 -3.57797 | gap 1, opp_overlap 197922 197921, overlap 197945 GAGCGCCCCGCACGG GGCGCGCGCG GAT TGC-CGCGCC TTCTCTCCCTTTCGC RALTA_B0181 197991 - 198449 + | putative transcriptional regulator, MarR family RALTA_B0182 198580 - 199287 + | putative membrane surface antigen TERM 169 199474 - 199433 - T 74 -13 -3.26471 | overlap 199417 199435 CGATGCCGACAGGAA CACCAGCGC-GCGCCCGTGC GCCA GCGCGG-CGCTGGGCTGGTG GTAGGAGCCGCGCGC TERM 170 199467 - 199435 - T 76 -13.4 -3.1978 | gap 1, overlap 199417 199433 ATGCCGACAGGAACA CCAGCG-CGCGCCCG TGCG CCAGCGCGGCGCTGG GCTGGTGGTAGGAGC clcD 200122 - 199412 - | Carboxymethylenebutenolidase RALTA_B0184 201055 - 200252 - | putative phospholipase D/Transphosphatidylase, Phosphatidylserine/phosphatidylglycerophosphate/cardiolip in synthases family RALTA_B0185 201097 - 201396 + | conserved hypothetical protein, DUF1458; putative exported protein TERM 171 201399 - 201430 + T 78 -12.2 -3.69373 | gap 1 CCGCGTGACCTGAGT CCTCGCCGCGCCGCG CTG CGCCGC-CGGCCAGG TTCTTGGAGTGTTTC TERM 172 201529 - 201499 - T 100 -12.5 -5.75342 | overlap 201500 GCCTGGTAAAAAAAA TCCGGCCGGCG CTGAACTGC CGCCGGCCGGG CAGGGAACCTTCAGG TERM 173 201528 - 201500 - T 100 -16 -4.04482 | overlap 201499 CCTGGTAAAAAAAAT CCGGCCGGCG CTGAACTGC CGCCGGCCGG GCAGGGAACCTTCAG RALTA_B0186 203222 - 201555 - | putative Hemolysin activation/secretion protein RALTA_B0187 205032 - 203413 - | putative lipoprotein TERM 174 205071 - 205081 + H 73 -8.2 -4.0942 | TTTCAATCGCTCGGC CGCG CAA CGCG TTTGTCTGCTGCGTG TERM 175 205309 - 205361 + H 83 -15.4 -3.18728 | opp_overlap 205309 GCGCGGGGAACAAAA CAGCGCCGGCGAGGGCGCGCGCAA CCTGC TTTCGCGCGCCCTCTGCGCTGCCG TTGGGTGTTCCCGCT TERM 176 205361 - 205309 - H 100 -15.4 -4.63218 | opp_overlap 205309 GCGCGGGGAACAAAA CAGCGCCGGCGAGGGCGCGCGCAA CCTGC TTTCGCGCGCCCTCTGCGCTGCCG TTGGGTGTTCCCGCT TERM 177 205705 - 205676 - H 76 -10.7 -3.78934 | gap 1, overlap 205678 TGCGGTTCACAAGAA CAGTCGGCC-CGGC AGC GCCGTGGCCAACCA GACAGGAGAAGGACA TERM 178 205703 - 205678 - H 76 -13.3 -3.4811 | gap 1, overlap 205676 CGGTTCACAAGAACA GTCGGCC-CGGC AGC GCCGTGGCCAAC CAGACAGGAGAAGGA RALTA_B0188 205751 - 206917 + | conserved hypothetical protein, putative exported protein TERM 179 206947 - 206982 + F 77 -2.5 -5.07486 | CATAGGTGTTTTCAC GGTGCGCTGTCGC TCATCACCCC GTCGCAGCGCATC TTTTTATTCCGCCTG TERM 180 207029 - 207057 + F 76 -10.2 -3.9122 | gap 1, opp_overlap 207013, overlap 207021 207025 207030 207031 207042 207043 GCCGGCATGGCCAGG CTG-CGGGCCGGT TTGC GCCGGCCCGCCTG TTCTTTAACAAGCTG TERM 181 207030 - 207055 + F 81 -13.9 -3.54488 | overlap 207021 207025 207029 207031 207042 207043 CCGGCATGGCCAGGC TGCGGGCCGGT TTGC GCCGGCCCGCC TGTTCTTTAACAAGC TERM 182 207031 - 207054 + F 84 -17.4 -2.72371 | overlap 207021 207025 207030 207029 207042 207043 CGGCATGGCCAGGCT GCGGGCCGGT TTGC GCCGGCCCGC CTGTTCTTTAACAAG RALTA_B0189 207278 - 207454 + | putative Flp/Fap pilin component RALTA_B0190 207477 - 207950 + | putative PREPILIN PEPTIDASE TRANSMEMBRANE PROTEIN TERM 183 208114 - 208137 + G 74 -11.8 -3.68024 | CGATCGTGGCGCCGG TGCTGATCAC CATC GTGATCGGCA TTGTCTATTACGGCG RALTA_B0191 208023 - 208499 + | conserved hypothetical protein; putative TadE-like RALTA_B0192 208543 - 209493 + | putative Flp pilus assembly CpaB RALTA_B0193 209498 - 210925 + | putative Type II secretion system protein; putative precursor TERM 184 210960 - 210923 - f 89 -16.3 -3.53012 | opp_overlap 210925, overlap 210925 CCGGGTTTCTCGAAA TAGCCGCCGGCCATGCC GGCT GGCATGGCCAACAGCTT TGAGGCGGAGAGATG TERM 185 210925 - 210958 + F 74 -12.3 -3.53012 | opp_overlap 210923 210925 GGGTTTCTCGAAATA GCCGCCGGCCATGCC GGCT GGCATGGCCAACAGC TTTGAGGCGGAGAGA TERM 186 210958 - 210925 - f 93 -18.9 -3.34398 | opp_overlap 210925, overlap 210923 GGGTTTCTCGAAATA GCCGCCGGCCATGCC GGCT GGCATGGCCAACAGC TTTGAGGCGGAGAGA RALTA_B0194 210973 - 212232 + | putative response receiver involved in pilum assembly TERM 187 212365 - 212392 + G 81 -12 -3.87815 | gap 1, opp_overlap 212347, overlap 212366 GGGCGCCGAGTTCGG CCGCTGG-TCGCG CAC CGCGATCCAGCGC TTTGTCGACCTGGAG TERM 188 212366 - 212391 + G 72 -15.5 -2.92475 | gap 1, opp_overlap 212347, overlap 212365 GGCGCCGAGTTCGGC CGCTGG-TCGCG CAC CGCGATCCAGCG CTTTGTCGACCTGGA TERM 189 213042 - 212985 - g 72 -14.2 -3.11316 | gap 3, overlap 213030 TCACCATCGAAGATA CCGCCGAGCTGGCGCTCAACCACCCGCAC GTG GTGCGGCTGG--AAA-GCCGGCCCGGCGG CTTCGAGGGCACCGG RALTA_B0195 212234 - 213550 + | putative cpaF1, type II secretion system ATP_binding component TERM 190 213598 - 213652 + G 100 -23.7 -3.72576 | gap 2, opp_overlap 213644 213647 TCATCACCGGCCTGG GGCTGCTGCTGCTCGCCGGCGCGCAGT CGC GC-GCGCGCCG-CGAACAGCAGCAGGC TTTCCTGCAGGCGCA RALTA_B0196 213543 - 214469 + | Type II secretion system protein RALTA_B0197 214486 - 215556 + | Type II secretion system protein RALTA_B0198 215598 - 216398 + | putative type II secretion system protein/TPR repeat-containing protein TERM 191 216448 - 216427 - g 73 -7.1 -4.18018 | CGTTCCCATCCAAAA GCGCGCCGC ATGC GTGGCGCTC TGCCTGGGGGCGCTG RALTA_B0199 216395 - 216766 + | hypothetical protein TERM 192 217280 - 217293 + G 78 -9.5 -4.18197 | opp_overlap 217265, overlap 217281 TTGCGAGCGGCAGCC CGCCG GTCG CGGCG TTTTCGCTCGGCACT RALTA_B0200 216763 - 218451 + | hypothetical protein TERM 193 219772 - 219714 - g 88 -15.1 -3.70773 | gap 1, overlap 219711 219715 GGCGACATGGAAGAA CGCCGCCGCATCCTGGCCGCGCTCGACG CCAA CGGCTGGCGCCGGCAGGACACGGCGGC- CAGCCTGGGCATCAG TERM 194 219772 - 219715 - g 86 -21.1 -2.82142 | overlap 219711 219714 GCGACATGGAAGAAC GCCGCCGCATCCTGGCCGCGCTCGACG CCAA CGGCTGGCGCCGGCAGGACACGGCGGC CAGCCTGGGCATCAG RALTA_B0201 218490 - 219854 + | putative transcriptional regulator; sigma54 family RALTA_B0202 220223 - 219867 - | hypothetical protein sbcD 220359 - 221507 + | Exonuclease SbcD TERM 195 223337 - 223307 - g 72 -14.1 -3.15861 | gap 2 CAGCAGCGGCAGGAA TCGGCCAGCCTCGCG CAA CGCGAGGC-GG-CGA TCGCGGCCTCGCGCG sbcC 221504 - 224566 + | Exonuclease SbcC RALTA_B0205 224855 - 224601 - | hypothetical protein TERM 196 225536 - 225523 - g 73 -9.5 -3.95324 | CATCGTCAACAACAA CGCCG GCAA CGGCG ATACCGGGCTGGCCG pcaI 225362 - 226024 + | 3-oxoadipate CoA-transferase subunit A (Beta-ketoadipate:succinyl-CoA transferase subunit A) pcaJ 226047 - 226685 + | 3-oxoadipate CoA-transferase subunit B (Beta-ketoadipate:succinyl-CoA transferase subunit B) pcaF 226728 - 227930 + | Beta-ketoadipyl CoA thiolase TERM 197 228044 - 228098 + F 100 -11.3 -5.10461 | gap 1, overlap 228047 228047 ACTCCGTGGCGGCTC CCGCC-CTCTCCCGAACCCTCTCCCG CAAG CGGGAGAGGGAGCAGGACAGCGGTAG TTTTTATTGAGTGAG TERM 198 228047 - 228094 + F 71 -14 -2.62714 | overlap 228047 228044 CCGTGGCGGCTCCCG CCCTCTCCCGAACCCTCTCCCG CAAG CGGGAGAGGGAGCAGGACAGCG GTAGTTTTTATTGAG TERM 199 228047 - 228095 + F 79 -13.8 -3.39664 | gap 1, overlap 228044 228047 CCGTGGCGGCTCCCG CC-CTCTCCCGAACCCTCTCCCG CAAG CGGGAGAGGGAGCAGGACAGCGG TAGTTTTTATTGAGT RALTA_B0209 228122 - 228853 + | putative 3-oxoacyl-[acyl-carrier-protein] reductase TERM 200 229991 - 229977 - g 73 -7 -4.14392 | opp_overlap 229978, overlap 229978 GCCCAACCCGGAAAA GCCGGC CCA GCTGGC CGCGTTCATGAAGTC RALTA_B0210 229054 - 230061 + | conserved hypothetical protein; putative periplasmic receptor protein, UPF0065 TERM 201 230117 - 230145 + T 100 -14.5 -4.93877 | opp_overlap 230118, overlap 230118 AGGCGCCGCCAGTGA ATGCCCCCAGGCC TGC GGCGTGGGGGCAG TTTTCTTTGGTCAGG TERM 202 230118 - 230144 + T 100 -18 -3.55603 | opp_overlap 230118, overlap 230117 GGCGCCGCCAGTGAA TGCCCCCAGGCC TGC GGCGTGGGGGCA GTTTTCTTTGGTCAG TERM 203 230144 - 230118 - T 90 -18 -3.05384 | opp_overlap 230117 230118 GGCGCCGCCAGTGAA TGCCCCCAGGCC TGC GGCGTGGGGGCA GTTTTCTTTGGTCAG RALTA_B0211 230977 - 230156 - | putative hydrolase; TRZ/ATZ family isolated domain RALTA_B0212 230982 - 231272 + | conserved hypothetical protein; isolated domain RALTA_B0213 231468 - 232139 + | lipoprotein, similar to Curli production assembly/transport component CsgG RALTA_B0214 232182 - 232643 + | putative lipoprotein RALTA_B0215 232640 - 233296 + | putative lipoprotein RALTA_B0216 234387 - 233341 - | putative Squalene/phytoene synthase RALTA_B0217 235292 - 234636 - | hypothetical protein RALTA_B0218 235505 - 236431 + | putative transcriptional Regulator, LysR family RALTA_B0219 238027 - 236444 - | NADP-dependent fatty aldehyde dehydrogenase RALTA_B0220 239056 - 238124 - | putative Dihydrodipicolinate synthase TERM 204 238270 - 238289 + g 76 -7.1 -4.36411 | overlap 238271 TCAGCACCTTGCTGG TCGCCAG CCAGCC CTGGCGG TTTTCATAGTTGATC RALTA_B0221 239171 - 240127 + | putative transcriptional regulator, LysR family RALTA_B0222 240237 - 241214 + | hypothetical protein pdxA2 241231 - 242253 + | 4-hydroxythreonine-4-phosphate dehydrogenase 2, (4-(phosphohydroxy)-L-threonine dehydrogenase 2) TERM 205 242318 - 242281 - f 78 -15.5 -2.74012 | gap 1 CCACTACCGGAACCA GCATGACCGC-CCCCGGC GCG GCCGGGGGGCGTTCGCGC CAACGCATTGCCATC RALTA_B0224 242345 - 243520 + | putative dehydratase, member of enolase family RALTA_B0225 244727 - 243732 - | putative transcriptional regulator, LysR family TERM 206 246160 - 246179 + G 74 -15 -3.02144 | GCCCAAGCTGCTGCG CCACCGCG GCCG CGCGGTGG TGTTCGAGAACCTGG RALTA_B0226 244934 - 246679 + | Dihydroxy-acid dehydratase (ilvD family) TERM 207 247982 - 248000 + G 73 -12.4 -3.44848 | opp_overlap 247970, overlap 247980 247981 CAAGGATGCCACGGG CAGCCTGG CGG CCGGGCTG TATTTCCTGGCGGCG RALTA_B0227 246744 - 248087 + | putative transport protein (MFS family) RALTA_B0228 248339 - 248109 - | hypothetical protein TERM 208 248905 - 248928 + G 73 -7.4 -4.18367 | gap 1, overlap 248871 GCGCAGCGCGTGGCG CAG-GGCTGGC CCG GGCAGCCGCTG TTTCTCTATGTGCTG RALTA_B0229 248551 - 249096 + | hypothetical protein TERM 209 249136 - 249106 - f 79 -15.5 -2.82933 | GCGTAAGCCAGCACA GCGGCGCGGCA-GGC GTT GCCATGCCGCG-CGC CACTGGCCTACCATC TERM 210 250023 - 249981 - g 85 -16.3 -3.59979 | gap 2, opp_overlap 249974 GTGCCGTATGCGAAA GGCGCCGACGGCATGGCGCTG TAC CGGCGCTATGCCG--GGCGCC AGGTCACCTATCTGG RALTA_B0230 249180 - 250319 + | hypothetical protein TERM 211 250372 - 250356 - T 100 -13.7 -5.46657 | GATGGCAAGAAAAAA CCCGCGA AAC TCGCGGG TTCAAGTCCCTGCCC RALTA_B0231 250659 - 250438 - | hypothetical protein RALTA_B0232 250972 - 251514 + | hypothetical protein RALTA_B0233 252528 - 251533 - | hypothetical protein TERM 212 252583 - 252627 + r 79 -10.7 -3.91897 | opp_overlap 252572 252582 252579, overlap 252585 252586 GAAACGGCAAACGAC GATGCGCTG-CCGGCGCGCGC GTCAG GCG-GCGCCGGTCAGCACGTG TTTCTGGCTGGCCAG TERM 213 252585 - 252625 + r 77 -13.3 -3.5511 | opp_overlap 252572 252582 252579, overlap 252583 252586 AACGGCAAACGACGA TGCGCTG-CCGGCGCGCGC GTCAG GCG-GCGCCGGTCAGCACG TGTTTCTGGCTGGCC TERM 214 252586 - 252624 + r 75 -14.6 -2.72745 | opp_overlap 252572 252582 252579, overlap 252585 252583 ACGGCAAACGACGAT GCGCTG-CCGGCGCGCGC GTCAG GCG-GCGCCGGTCAGCAC GTGTTTCTGGCTGGC RALTA_B0234 253035 - 252604 - | hypothetical protein RALTA_B0235 253239 - 254261 + | putative integrase/recombinase protein galE 254407 - 255426 + | UDP-galactose 4-epimerase TERM 215 255485 - 255464 - T 100 -15.9 -5.45802 | opp_overlap 255464 CGGCCAAAACAAAAA CGCCACGGA TGCT TCCGTGGCG TTTTGCCGTCTGCCG TERM 216 255464 - 255485 + T 100 -15.9 -4.16943 | opp_overlap 255464 CGGCCAAAACAAAAA CGCCACGGA TGCT TCCGTGGCG TTTTGCCGTCTGCCG RALTA_B0237 255820 - 255512 - | Histone-like nucleoid-structuring protein H-NS TERM 217 256241 - 256229 - H 74 -6.2 -4.4715 | CGCCAATCTATAAAA CCGG GCTGG CCGG GCAGCGACTCAAGGA RALTA_B0238 256363 - 258174 + | MCP: methyl-accepting chemotaxis protein TERM 218 258518 - 258554 + G 72 -14.3 -3.21747 | opp_overlap 258497 258499 GCAGCTGGCGGCCAG CTTTGCCGCCGCGGCGG CGG CCACCACGGCGGTCAAG TTGCTGGTGCAGTGG RALTA_B0239 258288 - 260261 + | putative Diguanylate cyclase (GGDEF) and c-di-GMP phosphodiesterase (EAL) domains cheY1 260419 - 260811 + | chemotactic response regulator, transmits chemoreceptor signals to flagelllar motor components cheW3 260952 - 261428 + | chemotaxis protein; regulation TERM 219 261532 - 261484 - f 100 -23.2 -3.12351 | gap 1 GCGCGCCAGACCGAA CCCGCCCGCGGCGCGGCCGCATG GACC CATGCGGC-GCGCCACAGGCACG CAGTACAGACTTAGA TERM 220 262557 - 262530 - g 74 -13.4 -3.34233 | gap 1, opp_overlap 262529, overlap 262521 262531 CCAGAACGCGGACAA CGCGCGCCAGGCC AGC GGCCTGGCG-GCC AATGCTTCGGACACG TERM 221 262556 - 262531 - g 73 -16.9 -2.60219 | gap 1, opp_overlap 262529, overlap 262521 262530 CAGAACGCGGACAAC GCGCGCCAGGCC AGC GGCCTGGCG-GC CAATGCTTCGGACAC aer 261547 - 263190 + | Flavoprotein, mediates positive aerotactic responses; signal transducer TERM 222 263249 - 263225 - f 80 -15 -3.19371 | gap 1, opp_overlap 263226 AGGGATCGAAGTGAA GGCAGGCGCGG CTTT CCGCGCC-GCC AGCGTACACCGGGTG TERM 223 264315 - 264288 - g 74 -13.4 -3.34233 | gap 1, overlap 264279 264289 CCAGAACGCGGACAA CGCGCGCCAGGCC AGC GGCCTGGCG-GCC AACGCATCGGACACG TERM 224 264314 - 264289 - g 73 -16.9 -2.60219 | gap 1, overlap 264279 264288 CAGAACGCGGACAAC GCGCGCCAGGCC AGC GGCCTGGCG-GC CAACGCATCGGACAC TERM 225 265070 - 265018 - g 72 -14 -3.14132 | gap 1, overlap 265053 GCCGGCGCCGATGAA GCCCCGCGCGATGCGG-CGGAGCCG GCGG CAGCCAAGCCCGCACCGCGCGCAGC GGCGATGACGCCGCG TERM 226 265089 - 265125 + G 73 -12.2 -3.42503 | gap 1, opp_overlap 265053 GATGACGCCGCGGCC CGCGCTCGCCGCTGCCG ACAA CGGCGACTG-GAGCGCG TTCTGAGTGTTGCCA RALTA_B0243 263308 - 265131 + | MCP: Methyl-accepting chemotaxis protein, chemotaxis sensory transducer RALTA_B0244 265140 - 265874 + | hypothetical protein flhD 266356 - 266673 + | transcriptional activator flhD flhC1 266670 - 267275 + | Flagellar transcriptional activator flhC; sigma factor TERM 227 267509 - 267526 + G 72 -14.1 -3.14211 | GTGGTGATCATCGCC GGCGCCG CCAT CGGCGCC TTCATCGCCACCAAT motA 267395 - 268258 + | MotA: chemotaxis protein; proton conductor component of motor, torque generator TERM 228 268780 - 268748 - g 77 -14.9 -3.11192 | GACATCACCAGCGAA GGCCTGCGCATCCAG ATC CTGGATACGCAGAAC CGGCCCATGTTCCGC motB 268292 - 269257 + | Chemotaxis protein MotB; Flagellar motor rotation, linking torque machinery to cell wall TERM 229 270121 - 270078 - g 100 -23.9 -3.06501 | gap 2 CAGATCGTGATCGAA GCCGCGGCCGGTGCGCCGGCG GCGG CGCCGGC-C-CCGGCCCCGGC AGAAGTTGCCGTTCC cheA 269385 - 271412 + | chemotactic sensory histidine kinase (soluble) cheW2 271437 - 271931 + | chemotaxis protein; regulation cheR 272122 - 273054 + | Chemotaxis protein methyltransferase RALTA_B0253 273054 - 273704 + | Putative chemotaxis protein cheD TERM 230 274132 - 274110 - g 70 -12.7 -3.30441 | gap 1 CACCATTGCCGACAA GCTGCGCGCG GCAT CGCGCGC-GC GCGTGCGCGCGGCCA cheB 273727 - 274809 + | chemotactic response regulator; methylesterase, in two-component regulatory system with CheA, e cheY2 274880 - 275266 + | Chemotaxis protein cheY; chemotactic response regulator TERM 231 275430 - 275394 - g 75 -10 -3.9941 | overlap 275398 GCCTGGACAAGGAAA TCGAGCGCGCCGCGCA AGCCA TCCCCGACGCGCGCGA CCGCCTGAACTACAT cheZ 275285 - 275920 + | Chemotaxis protein cheZ; Chemotaxis phosphatase RALTA_B0258 276453 - 276758 + | hypothetical protein TERM 232 276998 - 277028 + T 70 -11.9 -3.14564 | gap 1, overlap 276996 GGCGCTATCTTGGGC GATGCCCCGCCGCT TGTC AG-GGCGGGGAATC TTCGTCGGACCGTCA RALTA_B0259 278535 - 277090 - | hypothetical protein RALTA_B0260 283514 - 278547 - | conserved hypothetical protein; putative helicase TERM 233 279570 - 279542 - G 70 -15.3 -2.69471 | overlap 279541 CGATGCCCACACAAG TGCCCGCTACAAG CTG CCTGGAGCGGGCA TAAAACTCATCGCAG TERM 234 283439 - 283453 + g 76 -2.8 -4.71426 | overlap 283437 CAGGCGCGGTATCGG TGAAGG TCG CCTTGA TTTTGTTGATGGCCC RALTA_B0261 284097 - 284183 + | hypothetical protein RALTA_B0262 284260 - 284976 + | hypothetical protein TERM 235 285051 - 285062 + F 76 -7.2 -4.27911 | GAAGCGCTTGCGGCG GCCG AGCC CGGC TTTGTTCCGTATTTT TERM 236 286062 - 286073 + G 72 -4.4 -4.55023 | GATGGAGCCATCTGA TCGA GGCC TCGA TTTTGTCCTCTTGGC RALTA_B0263 285424 - 286206 + | hypothetical protein RALTA_B0264 286493 - 287140 + | hypothetical protein RALTA_B0265 287144 - 287371 + | hypothetical protein RALTA_B0266 287368 - 287721 + | hypothetical protein TERM 237 287776 - 287745 - T 100 -16 -4.13767 | opp_overlap 287751, overlap 287751 GCGGCCAGGCGAAAA GAAAAACGCCAACC CATG GGTTGGCGTTTTGC TTGGGGGCTACTACC TERM 238 287770 - 287751 - T 100 -13.6 -5.46706 | opp_overlap 287751, overlap 287745 AGGCGAAAAGAAAAA CGCCAACC CATG GGTTGGCG TTTTGCTTGGGGGCT TERM 239 287751 - 287770 + T 100 -13.6 -4.41047 | opp_overlap 287751 287745 AGGCGAAAAGAAAAA CGCCAACC CATG GGTTGGCG TTTTGCTTGGGGGCT aceA2 289376 - 287796 - | Isocitrate lyase ; Isocitrase; Isocitratase TERM 240 289310 - 289327 + g 72 -4.8 -4.41348 | overlap 289283 289311 CGGGGTTGATGGCAT TCCAGG CGCTGC CCTGGG TTTCTTTCAAAGCAG TERM 241 289489 - 289509 + H 74 -5.5 -4.46835 | overlap 289484 GTCCGTTGCGGTTAT GTCTTATAT AAG ACATAAGAC TTTGTTTCCCCTTAT TERM 242 289625 - 289611 - H 71 -5 -4.43012 | AGCGCAACATCAAAA TTCCAC GAT GTGAAA CGCGCTTTCAGTGAG TERM 243 289930 - 289877 - g 81 -10.3 -4.38712 | gap 3, opp_overlap 289879, overlap 289882 GCGATCTCGAGAAAA CCGAACCCGCCTCACCCCG-GCGCCT GGAAA AGGCGCGCGAGGAGGGGCAGGT--GG TGCGTTCGCGCGAGT TERM 244 289927 - 289882 - g 84 -16.8 -3.41587 | gap 1, opp_overlap 289879, overlap 289877 CTCGAGAAAACCGAA CCCGCCTCACCCCG-GCGCCT GGAAA AGGCGCGCGAGGAGGGGCAGG TGGTGCGTTCGCGCG flhB 289849 - 290991 + | FlhB: Flagellar biosynthetic protein. flhB/hrpN/yscU/spaS family. flhA 290988 - 293069 + | FlhA: Flagellar biosynthesis protein. FHIPEP (flagella/HR/invasion proteins export pore) family. TERM 245 294429 - 294402 - g 82 -17 -3.01712 | CTCGCTGTGGCAACA GCGCAGTGCCGG CGCC CCCGCACTGCGC GCCATGTCGCAGCAA RALTA_B0270 293080 - 295419 + | Putative flagellar biosynthesis protein, flagella-associated GTP-binding protein; GTP-binding SRP family TERM 246 295610 - 295592 - g 72 -13.8 -3.13403 | opp_overlap 295568, overlap 295590 GCTGGTCGACGAAGA CGCGGCCG CCG CGGCCACG CGCTTGTCCGGCGCG RALTA_B0271 295416 - 296222 + | Putative negative regulator of flagellin synthesis fliA 296323 - 297039 + | RNA polymerase sigma factor for flagellar operon; sigma-70 factor family; Sigma-F factor; Sigma-27; Sigma-28 flhE 297039 - 297476 + | FlhE: flagellar protein TERM 247 297531 - 297484 - T 83 -15.2 -3.18912 | TCAGGTAGGGATGAA TGTTCCGTTTTTTCGTCAGTTA TCAA CAAGTGACGAAAAAATGGAACA TCAGGCCGAGAGATG flgN 298174 - 297713 - | flagella synthesis protein TERM 248 298116 - 298137 + g 71 -11.6 -3.57144 | overlap 298088 TCGGCGAGGAGTTGG CCGAAGGC CTGGAT GCCTTCGG TTTCGCGCTGCAGGG flgM 298491 - 298180 - | Putative negative regulator of flagellin synthesis, anti-sigma-28 factor flgA 299437 - 298655 - | FlgA: Flagella basal body P-ring formation protein ; signal peptide flgB 299672 - 300079 + | FlgB: Flagellar basal-body rod protein flgC 300134 - 300502 + | FlgC: Flagellar basal-body rod protein flgD 300561 - 301226 + | FlgD: Basal-body rod modification protein flgE 301295 - 302539 + | FlgE: Flagellar hook protein flgF 302566 - 303309 + | Flagellar basal-body rod protein flgF TERM 249 303352 - 303316 - f 86 -16.5 -3.21258 | ACCAACTGAACCGAA TGACCGGCCGGCACGGC GTC ACCGTGCCGGCCTCCCA GCACCTACGCAAGGA flgG 303373 - 304158 + | FlgG: Flagellar basal-body rod protein flgH 304179 - 304868 + | FlgH: Flagellar L-ring protein ; signal peptide TERM 250 305587 - 305628 + G 80 -16.5 -3.14344 | gap 1 CTCGACGGGCGCGTG GTGCAGGTGCGCGCGCCGGC ATC GCCGGCG-GCGCGCGTGGGC TTCCTGGCCCGCATC flgI 304876 - 306021 + | FlgI: Flagellar P-ring protein ; signal peptide flgJ 306024 - 307082 + | FlgJ: Peptidoglycan hydrolase TERM 251 308029 - 307983 - g 70 -15.1 -2.71364 | overlap 307943 308025 CCAGCCGCCCAACGA CCTGCTCGACCAGCGCGACCA GGCCG TGGCCGAGCTGACCAAGCTGG TCGGCGCCAAGGTGG flgK 307396 - 309315 + | FlgK: Flagellar hook-associated protein 1 RALTA_B0287 309353 - 310582 + | Flagellin, N-terminal. bacterial flagellin family. TERM 252 310593 - 310610 + T 76 -10.5 -3.83998 | TGTAAGGGCGGGAAT GGCCGGC ATCT GTCGGCC TTTGCTGTCCCCTCA RALTA_B0288 311465 - 310644 - | Conserved hypothetical protein; TPR repeat TERM 253 311348 - 311337 - G 70 -3.6 -4.4078 | GTCCTGGAAGGAAAA GACG TGTT CGCC GCGCGGGCCGCGCGT RALTA_B0289 312355 - 311462 - | Putative Ku domain containing protein TERM 254 311699 - 311714 + g 81 -10.4 -4.33105 | CTTTGCATCGATGGC GGCCAG GATC CTGGCC TTTTCCTCGTCCTTG RALTA_B0290 314923 - 312386 - | Putative ATP dependent DNA ligase, eukaryotic type primase C-term domain TERM 255 312926 - 312959 + g 74 -13.9 -3.25823 | ATGGTCGATATCGCG CGCGGTGGAATTCCA GGTG TGGAACTCCACCACG TTCATCTGGGCGGCC bcsZ 316340 - 315159 - | endo-1,4-D-glucanase; glycosyl hydrolase 8 (cellulase D) family; signal peptide TERM 256 316346 - 316372 + r 73 -10.7 -3.54935 | overlap 316347 GGTCGGTCATGGCGA ACGGGGGCCGC CCATC GCGGCGCCCGG TTTCCGCAGAGTTTA TERM 257 316347 - 316371 + r 75 -14.2 -2.7264 | overlap 316346 GTCGGTCATGGCGAA CGGGGGCCGC CCATC GCGGCGCCCG GTTTCCGCAGAGTTT RALTA_B0292 317063 - 316527 - | Conserved hypothetical protein; Bifunctional deaminase-reductase C-terminal domain RALTA_B0293 318794 - 317142 - | Putative ABC transporter ATP-binding protein TERM 258 318930 - 318888 - R 81 -10.5 -4.19238 | gap 1, opp_overlap 318888 318928 GCCGCAATGTTAAAA GCATCCGC-GGCGCGGCGCA ATCT TGCGCAACGCGTACGGACGC TTGGTCAGGCGTCGT RALTA_B0294 320021 - 318999 - | Putative fructose-bisphosphate aldolase class I (FBP aldolase) TERM 259 319847 - 319884 + g 81 -10.3 -4.28548 | opp_overlap 319836 TGAACTCGCCCAGCC CCGGCGTGCCCAGCAGC AGTT GCCGCCATGCGCGCCGG TTTTCCTCGCTCGAT TERM 260 321095 - 321074 - g 74 -14.4 -3.26531 | overlap 321072 CTACGAACAGGAAGA CGCGCGCG TGCTGC CGCGCGCG GTAGGCTTCAAGGCG ilvD 320304 - 322163 + | dihydroxyacid dehydratase TERM 261 322204 - 322221 + F 100 -12.7 -5.60993 | overlap 322174 TTGCGTCAAGGGGAA GCCGCTC TTTG GAGCGGC TTTTTTTGTCAAGCG TERM 262 323176 - 323160 - g 70 -9.3 -3.91084 | GGACCCCGAAGTAAA GCGCGCG ATC CGGGCGC ACGCGCCGGCGCGCT TERM 263 323654 - 323632 - g 71 -9.9 -3.76224 | gap 1 CTGGTACCGACCAAA TCCC-TGCGG TCGG CCGCACGGGA ACACGGCTATGCGGC RALTA_B0296 322393 - 325281 + | conserved hypothetical protein; putative VGR-RELATED PROTEIN RALTA_B0297 325301 - 327478 + | Conserved hypothetical protein; putative chitinase TERM 264 327496 - 327485 - g 70 -3.6 -4.45544 | GTGTATTAATGAAAA GGAC GCTC GCCC TGGTGCTATTAATGA TERM 265 327909 - 327894 - g 72 -4.6 -4.4078 | TGCTTGGAATCAAAA CGGCGT GAAC ATGCCG GTTGGAGGGCAATGT RALTA_B0299 327478 - 328065 + | hypothetical protein; putative signal peptide RALTA_B0300 328987 - 328100 - | putative transcriptional regulator, LysR family TERM 266 329906 - 329935 + G 82 -6.3 -4.71426 | TGCTGCGCCAGCCGC CGGTGGTGCTGGG CATG CTCGGTGCCAGCG TTTTCTTCATGGGGC RALTA_B0301 329194 - 330456 + | putative transport protein, Major Facilitator Superfamily (MFS) iorB 332799 - 330508 - | Isoquinoline 1-oxidoreductase beta subunit; putative signal peptide iorA 333270 - 332800 - | Isoquinoline 1-oxidoreductase alpha subunit RALTA_B0304 335137 - 333386 - | putative diguanylate cyclase (GGDEF) domain RALTA_B0305 336904 - 335213 - | Putative Mechanosensitive ion channel, MscS family TERM 267 336909 - 336893 - G 76 -13.7 -3.53012 | opp_overlap 336891 GTGGGGTTTGGGAAA CGGCGGT GCC ACCGCCG CGTGCGTTCCCCATC RALTA_B0306 337028 - 338449 + | Putative Patatin-like phospholipase RALTA_B0307 339013 - 338456 - | hypothetical protein TERM 268 338985 - 339006 + g 76 -7.9 -4.25104 | ACCTCCATTTGTCTG GCGATGGCT GCAT GGCCAGCGC TTTTCATCGGAACCA RALTA_B0308 339981 - 339217 - | putative 4'-phosphopantetheinyl transferase superfamily protein RALTA_B0309 343097 - 340002 - | Putative Acetoacetyl-coenzyme A synthetase TERM 269 342295 - 342267 - G 100 -22.5 -3.75332 | opp_overlap 342294, overlap 342282 342283 ATGGTTGAACGGAAA GCGACGCCAGGCA AAG TGCCCGGCGTCGC CGCGGCGGATCAGTT TERM 270 343248 - 343227 - H 78 -14.4 -3.02144 | CCACCGTGGCCAAGA CGCCGCGC TGTGCC GCGCGGCG TGATGAAATCGACGC TERM 271 343637 - 343587 - g 85 -16.3 -3.64703 | overlap 343588 CCGCGGCCAGGCAAA GGCGCAACCTGCTGCG-GGCCGAGA TCC TCTCGGCCGCGCAGGACATTGC-CC GCGAAGAACGCACCG TERM 272 343637 - 343588 - g 74 -16.5 -2.78679 | gap 1, overlap 343587 CGCGGCCAGGCAAAG GCGCAACCTGCTGCG-GGCCGAGA TCC TCTCGGCCGCGCAGGACATTGCCC GCGAAGAACGCACCG RALTA_B0310 343412 - 343843 + | hypothetical protein RALTA_B0311 344385 - 343885 - | hypothetical protein RALTA_B0312 346876 - 344465 - | Putative transcription regulator, AraC family TERM 273 345466 - 345509 + g 70 -8.6 -3.84406 | opp_overlap 345447 345448 CGCCGGCGCCGCGTC CGTAGACCGAGGCGTCGATG GGGC CGGCGCCGCGGCGGTCGACG TTCTTCTGCTCGGCG TERM 274 346207 - 346250 + g 89 -18.8 -3.28712 | gap 1, opp_overlap 346207, overlap 346209 346246 AGACCCGCGCGAACA CC-GCCGCGCGCGACGGCG TCATGTC CGCCGGCGCGCTCGGCTGG TTGTCCGCCAGGGCC TERM 275 346249 - 346207 - G 85 -19 -3.02263 | opp_overlap 346207 346209 346246 AGACCCGCGCGAACA CCGCCGCGCGCGACGGCG TCATGTC CGCCGGCGCGCTCGGCTG GTTGTCCGCCAGGGC TERM 276 346209 - 346247 + g 84 -20.2 -2.82623 | opp_overlap 346207, overlap 346207 346246 ACCCGCGCGAACACC GCCGCGCGCGACGGCG TCATGTC CGCCGGCGCGCTCGGC TGGTTGTCCGCCAGG TERM 277 346854 - 346900 + g 80 -15.8 -3.14132 | gap 1 CTGGCGTCTGACTGC CACAGCGCAGGCGCGGCGGAC ATGGCG GTCCGCCGCG-CTGCGCAACG TTGCTGGCGAAGGCC RALTA_B0313 347117 - 346926 - | hypothetical protein RALTA_B0314 347358 - 347149 - | hypothetical protein RALTA_B0315 348410 - 347385 - | hypothetical protein TERM 278 348924 - 348908 - H 79 -9.3 -4.16943 | overlap 348909 CTTGACAGTGCAAAA TCCGGGC GAA GCCCGGG CCGATCCATCGCCTG TERM 279 348923 - 348909 - H 71 -12.8 -3.09844 | overlap 348908 TTGACAGTGCAAAAT CCGGGC GAA GCCCGG GCCGATCCATCGCCT RALTA_B0316 348970 - 350184 + | putative Formyl-CoA transferase; caiB/baiF CoA-transferase family TERM 280 350206 - 350238 + T 74 -14.2 -2.64616 | gap 1 GCGCACGCCGCCGGT GGCTGGC-CGGCGTG GTGC TACGCCGCGTCAGCC TGCTGTGGCTCCGGC TERM 281 350244 - 350255 + T 71 -5.8 -4.27316 | CGCGTCAGCCTGCTG TGGC TCCG GCCA TTTTGCCTTGCGCGG RALTA_B0317 351560 - 350223 - | Putative TRANSMEMBRANE SENSOR HISTIDINE KINASE TERM 282 350918 - 350940 + g 84 -16.2 -3.40403 | GCGCGACGGTCGCCA GCGCCGCGGC CAT GCCGCGCCGC TTCTGCTCGGCCAGC RALTA_B0318 352863 - 351613 - | putative 8-amino-7-oxononanoate synthase; class-II pyridoxal-phosphate-dependent aminotransferase family TERM 283 351837 - 351783 - G 70 -12.1 -3.31726 | opp_overlap 351783, overlap 351781 CCGGCGCACAGAATA CCGC-GCCGAAGATGCCGCGCCGCTGC AGC GCGTCG-CGCAGCACCTTCACCTGCGG TTCGCTGCCGGCTTC TERM 284 352257 - 352283 + g 73 -15.8 -2.62263 | opp_overlap 352255 CCAGTTCGACATAGT CCACCAGCGGCG CCA CGCTGCCGGTGG TGCTGTAGACCGAAT RALTA_B0319 354514 - 353336 - | PUTATIVE ACYL COA DEHYDROGENASE OXIDOREDUCTASE PROTEIN TERM 285 353477 - 353459 - G 75 -5.8 -4.39426 | CACATCGCGATAAAA GCGCTCGG CCA CGGTGCGC GCCATATAGCCGCTG RALTA_B0320 355554 - 354556 - | conserved hypothetical protein; putative exported protein, UPF0065 TERM 286 355293 - 355330 + g 87 -17.7 -3.30124 | opp_overlap 355296 355297, overlap 355296 CAGGAGACCTGGCGA CAAGGTCGGCGCCGATG GCGC CGCCGGCGCCGGTCTTG TTCTCGACGATCACC TERM 287 355296 - 355327 + g 82 -13.6 -3.7941 | opp_overlap 355296 355297, overlap 355293 GAGACCTGGCGACAA GGTCGGCGCCGATG GCGC CGCCGGCGCCGGTC TTGTTCTCGACGATC TERM 288 355317 - 355296 - G 74 -13.7 -3.29829 | gap 1, opp_overlap 355296 355293, overlap 355297 GAGACCTGGCGACAA GGTCGGCGCC GAT GGCGCCG-CC GGCGCCGGTCTTGTT TERM 289 355666 - 355714 + r 89 -17.5 -3.12351 | gap 2 GGCATTGCCGGCAGG CTGCGCTGGCGCGCCGCTGTCCC GTGAG GGGTCAGCG-CGCG-CAGCTCAG TTCGATCTGCCGCAC RALTA_B0321 356509 - 355697 - | putative transcriptional regulator, IclR family TERM 290 356908 - 356943 + G 72 -13.3 -3.14051 | gap 1, opp_overlap 356892 356891, overlap 356906 GCGGCAAGCGCGGCA TCTCGCTGGACGTGCG CACGC CGCGCGGCC-GCGAGA TCTTCCTGCGCCTGC RALTA_B0322 356661 - 357896 + | Putative formyl-coenzyme A transferase TERM 291 358275 - 358231 - g 75 -8.4 -4.13945 | gap 1, overlap 358232 AGCGCCATCGCAAAA TCCGCCAGCCGCGGCATCGGC CCCT GCCGCTACCGCTGC-GACAGG CCAGGACACTCCCGC TERM 292 358732 - 358719 - g 72 -3.8 -4.56775 | ATCTCGCCGGAAAAA CCGT GCACGT ACGG CGCGCCAGCAGCTAT RALTA_B0323 358115 - 359662 + | putative soluble Lytic transglycosylase RALTA_B0324 360908 - 359643 - | D-amino acid dehydrogenase, small subunit; similar to dadA RALTA_B0325 361362 - 363698 + | TonB-dependent receptor RALTA_B0326 363724 - 364950 + | Conserved hypothetical protein, BNR repeats; putative outer membrane protein TERM 293 365425 - 365482 + G 70 -13.1 -3.37975 | gap 1, overlap 365426 CCGACTGGGCACGGC ACCTGCGCTGGGCCGGCATCGCGGGCTG AGA CTGCC-GCGGCGCCAGCCCGGCGCCGCC TTCTACGTCATCAAT TERM 294 365426 - 365481 + G 73 -16.6 -2.62463 | gap 1, overlap 365425 CGACTGGGCACGGCA CCTGCGCTGGGCCGGCATCGCGGGCTG AGA CTGCC-GCGGCGCCAGCCCGGCGCCGC CTTCTACGTCATCAA RALTA_B0327 364950 - 365453 + | conserved hypothetical protein, putative exported protein TERM 295 365518 - 365538 + T 73 -12.5 -3.18264 | CAGTTCCTTCGGCAG CTTGCCGCC GTT GGCGGCCAG TTCCTGCATCAGGCG RALTA_B0328 365973 - 365497 - | hypothetical protein RALTA_B0329 367189 - 366200 - | conserved hypothetical protein, UPF0065 TERM 296 366953 - 366968 + g 73 -7.5 -4.17048 | GCCCATCGCGATATT GCCGG CGGCGC CCGGC TTGTTTTCGACGAAC RALTA_B0330 368229 - 367246 - | conserved hypothetical protein, UPF0065 TERM 297 367666 - 367615 - G 70 -9.2 -3.9122 | opp_overlap 367618 367619, overlap 367612 367617 367618 CACGTTGGCAAAGAA CAGCGGCACCTGTCCGGCAATGAC GTCG GTCATGGCCGGGCCGCCGCCCTTG TAGGGCACGTGCAGC RALTA_B0331 369014 - 368265 - | putative transcriptional regulator, GntR, UbiC domains TERM 298 368772 - 368739 - G 72 -3.7 -4.66833 | gap 1, overlap 368740 GCCGAAGCGGAAAAA CCGCATCAGGCTG-GC GCC GCTCAGCCCCCTGCGC ACAAAGGTGCCCTTG TERM 299 370058 - 370105 + G 85 -16.2 -3.64682 | gap 1, overlap 370057 370059 GAGGGCAGGACGGTG ACGGCGCGGCGTTGT-CCGCCGC GCT GCGCTGGCGCAACGCCGCGGCGC TTTACGGGTTTGCTC TERM 300 370059 - 370104 + G 83 -19.7 -2.78327 | gap 1, overlap 370057 370058 AGGGCAGGACGGTGA CGGCGCGGCGTTGT-CCGCCGC GCT GCGCTGGCGCAACGCCGCGGCG CTTTACGGGTTTGCT RALTA_B0332 369277 - 370131 + | putative hydrolase, Amidohydrolase 2 motif RALTA_B0333 371080 - 370160 - | putative TRANSCRIPTION REGULATOR PROTEIN, LysR TERM 301 370945 - 370922 - G 72 -13.8 -3.14132 | overlap 370924 CGTCGTGCGCACGAA CAGGCGCGCG CCGA CGCGCGCCTC CAGCCGCGCAATGGC TERM 302 370943 - 370924 - G 80 -16.4 -3.13403 | overlap 370922 TCGTGCGCACGAACA GGCGCGCG CCGA CGCGCGCC TCCAGCCGCGCAATG RALTA_B0334 371174 - 372187 + | putative OXIDOREDUCTASE RALTA_B0335 372873 - 372199 - | hypothetical protein TERM 303 372768 - 372727 - G 100 -26 -3.14132 | GCGCGCCTCCAGCAA CT-GCCGCGCCGCGCCGCCG TGTC CGGCGGCGCGG-GCGGCCAG TGCCTGCATCAGCCG RALTA_B0336 373513 - 372866 - | Putative transmembrane protein, OmpA/MotB motif TERM 304 372907 - 372929 + g 81 -7.6 -4.66609 | overlap 372879 372895 TGGTCACGCGCGGCA CCGGCGAG ATTTCCA CGCGCCGG TTTTTCGCTCGGCTG RALTA_B0337 376386 - 373510 - | putative transmembrane protein, DUF802 TERM 305 374922 - 374942 + g 74 -11.1 -3.78775 | overlap 374925 AGACCTCGCGCACGT TCCGCGCCA GCG TGGCGCTGA TTTCGTCGTGGCGGC TERM 306 375157 - 375174 + g 75 -5.5 -4.66609 | overlap 375147 375139 GGCCGACAGCGCTTG CTGGTTG TCGC CGGCCAG TTTTTCGGTGGCCTG TERM 307 376325 - 376301 - G 71 -9.9 -3.73953 | ACCAGCGCCAGGAAA TTGGTGCCGGC ATA GCCCGCGCCAA TCCAGCAGACGACCG RALTA_B0338 377140 - 376397 - | hypothetical protein TERM 308 376702 - 376746 + g 78 -13.4 -3.6608 | gap 1 TGGCCGGCGTACCGG CCGACAGC-GCGGCGCGCAGG CGCG CGCGCGCGCCGCCGATGGCGG TTTCCATGGCCTGCT RALTA_B0339 377509 - 377622 + | hypothetical protein RALTA_B0340 377687 - 378733 + | conserved hypothetical protein, DUF1254 DUF1214 RALTA_B0341 379143 - 378778 - | Putative bleomycin resistance protein/dioxygenase TERM 309 379318 - 379345 + H 71 -12.6 -3.06796 | overlap 379316 CCGCTGGCTTCTGGC CGCAGCGGGCGC GGCC GCTGCCGCTGCG TTGCCTGGCGTCAGC ssuA2 379346 - 380245 + | aliphatic sulphonate binding protein precursor; sulfur starvation inducible plcN2 382481 - 380277 - | PHOSPHOLIPASE C (PHOSPHATIDYLCHOLINE CHOLINEPHOSPHOHYDROLASE) (Phosphatidylcholine-hydrolyzing phospholipase C) SIGNAL PEPTIDE PROTEIN TERM 310 381299 - 381352 + g 70 -15.2 -2.78384 | gap 1 CATCGCTCAGCGTCG ACTTGCCGGCCAGCGTGCCGTC-CG GGTTG CGCGACGGCGCGGTGGGCGGCGGGC TGTGGTCGAAGAAGC RALTA_B0344 382751 - 382548 - | hypothetical protein; putative exported protein TERM 311 385178 - 385161 - g 72 -4 -4.56597 | TCGCGGCGGCAAAAA CGCGGC AGTGGG GACGCG AGCCGCAGGTGCGGA katE 383072 - 385204 + | CATALASE HYDROPEROXIDASE HPII OXIDOREDUCTASE PROTEIN TERM 312 385357 - 385301 - f 73 -11 -3.6761 | gap 4 CCCCCGCAACAAAGA GCACGG-ATGCCAGTCCGCCGCCGGGGC CATGC GCCCCGGCGATG--CCG-CATACCGTGC CGACCGGCAGGAACG RALTA_B0346 385468 - 387099 + | METHYL-ACCEPTING CHEMOTAXIS TRANSDUCER TRANSMEMBRANE PROTEIN RALTA_B0347 387180 - 388142 + | putative threonine dehydratase RALTA_B0348 389060 - 388155 - | Putative transcriptional regulator, LysR family RALTA_B0350 389173 - 390348 + | putative ACYL COA DEHYDROGENASE OXIDOREDUCTASE PROTEIN TERM 313 390687 - 390717 + GF 73 -11 -3.58305 | opp_overlap 390686 390687, overlap 390679 TGGATCCGCTACAAC GCCCCGCGCTGGAT CTG GTCCGGCACGGCGC TTTGCGGCATTCCTT RALTA_B0351 390345 - 391424 + | hypothetical protein RALTA_B0352 391393 - 392592 + | putative acyl-CoA transferases/carnitine dehydratase RALTA_B0353 392630 - 393592 + | Conserved hypothetical protein, UPF0065 RALTA_B0354 393698 - 394948 + | conserved hypothetical protein; UPF0027; similar to E.coli rtcB RALTA_B0355 395902 - 394976 - | conserved hypothetical protein, UPF0065 TERM 314 395639 - 395697 + g 79 -11.1 -4.07687 | gap 2 CAGCTTCTTGAAGAC GCTCGGGTTGATGGCGAAGCTGCTGTTGA CGA TCAGCAG-GGTGTAGCCGTC-ACCCGGGC TTTTGGCGACGAACT RALTA_B0356 397817 - 396012 - | putative bifunctional: glycosyl transferase and thymidine/pyrimidine nucleoside phosphorylase RALTA_B0357 398171 - 398716 + | Putative transcriptional Regulator, MarR family TERM 315 398772 - 398744 - T 81 -7.9 -4.41494 | overlap 398745 398746 CACCGCCAATGAAAA GCCCCCCGACGGC GCG GCCGGCGAGGGTG AATGCCTCGGGTAGA TERM 316 398770 - 398746 - T 74 -14.9 -2.54166 | overlap 398745 398744 CCGCCAATGAAAAGC CCCCCGACGGC GCG GCCGGCGAGGG TGAATGCCTCGGGTA RALTA_B0358 399681 - 398848 - | putative NICOTINATE-NUCLEOTIDE PYROPHOSPHORYLASE (CARBOXYLATING) QUINOLINATE PHOSPHORIBOSYLTRANSFERASE (DECARBOXYLATING) TERM 317 399013 - 399031 + g 74 -13.2 -3.30441 | CTGCACTGCCTCCTT CATGTCGG GCA CCGACATG TTGTCCAGCATGATC fliR 400620 - 399823 - | FliR: flagellar biosynthesis inner membrane protein. fliR/mopE/spaR family. fliQ 400974 - 400705 - | FliQ: flagellar biosynthesis protein. fliQ/mopD/spaQ family. fliP 401839 - 401015 - | fliP: flagellar biosynthesis protein. fliP/mopC/spaP family. TERM 318 401792 - 401771 - G 70 -8.6 -3.84406 | overlap 401775 CGGCGAGGACAACAA CGGAGCCG GGCGCG CGGCGCCG GCAGGGCGCGGCAGC fliO 402291 - 401836 - | FliO: Flagellar biosynthesis protein. fliO/mopB family. fliN 402734 - 402288 - | FliM: flagellar motor switching and energizing component. fliN/mopA/spaO family. fliM 403746 - 402727 - | FliM: flagellar motor switching and energizing component fliL 404295 - 403804 - | FliL: flagellar basal body-associated protein FliL TERM 319 406563 - 406524 - g 95 -19.4 -3.55444 | overlap 406556 GCCGCATCCTGGAAA TCGAAGGCCTGCCCGACC TGAA GGTCGAGCAAGCGTTCGA GCTGTCCGACGCCTC acnB 404699 - 407365 + | bifunctional aconitate hydratase 2 and 2-methylisocitrate dehydratase TERM 320 407387 - 407414 + F 95 -9.8 -4.56597 | opp_overlap 407392, overlap 407392 407395 407399 AGCGCCAGCTGGCAT GATAAGGGGCCC CGCG GGGCCCCTTCTG TTTTTGCAGGGCCCC TERM 321 407392 - 407409 + F 90 -14.1 -4.07746 | opp_overlap 407392, overlap 407387 407395 407399 CAGCTGGCATGATAA GGGGCCC CGCG GGGCCCC TTCTGTTTTTGCAGG TERM 322 407409 - 407392 - f 79 -14.1 -3.4072 | opp_overlap 407392 407387 407395 407399 CAGCTGGCATGATAA GGGGCCC CGCG GGGCCCC TTCTGTTTTTGCAGG RALTA_B0367 407557 - 408261 + | putative GST-RELATED PROTEIN TERM 323 408806 - 408768 - g 81 -9.5 -4.30576 | gap 1, overlap 408778 GCTGGATCATGAAAA TGGTGATGAAGCGCGCCG GCGC CGGCACGCC-CAGCGCCA ACCGCATCACGCTGC RALTA_B0368 408386 - 409738 + | PUTATIVE DEHYDROGENASE OXIDOREDUCTASE PROTEIN RALTA_B0369 409814 - 410662 + | Putative transmembrane protein RALTA_B0370 410833 - 411657 + | Putative methyltransferase protein RALTA_B0371 411858 - 412220 + | hypothetical protein RALTA_B0373 412740 - 412318 - | PUTATIVE toxin of a toxin/antitoxin system TERM 324 412544 - 412501 - G 86 -21 -2.79915 | ACGGACCGGACCATA GGCGCGCGCCGCTGCCGC GTTCAGCG GCAGCACCGGCACGCGCC CGATCAGCGCCTGCA RALTA_B0374 412988 - 412740 - | putative antitoxin of a toxin/antitoxin system TERM 325 413818 - 413846 + G 72 -5.9 -4.35116 | overlap 413820 ACCTCGACAGCGGTG TACTGGTGCGC GTCGCCG GCGCGCCGGAA TTTTCGTATCCCGTG RALTA_B0375 413115 - 413975 + | Putative transcriptional regulator, LysR family RALTA_B0376 414244 - 413996 - | hypothetical protein RALTA_B0377 414474 - 415631 + | putative acyl-CoA deshydrogenase TERM 326 415646 - 415685 + F 100 -14.2 -5.03715 | opp_overlap 415629, overlap 415653 GCCTGCCCAGGCAGG CTTCCGACGGCACGGCTG GCAA CAGCCGTGCCGTTTGTCG TTTTTTCCGAATGGT TERM 327 415653 - 415678 + F 100 -20.5 -4.3179 | overlap 415646 CAGGCAGGCTTCCGA CGGCACGGCTG GCAA CAGCCGTGCCG TTTGTCGTTTTTTCC RALTA_B0378 416085 - 417380 + | putative outer membrane efflux protein RALTA_B0379 417434 - 418627 + | PUTATIVE TRANSPORT/EFFLUX TRANSMEMBRANE PROTEIN TERM 328 418861 - 418912 + G 77 -14.5 -3.23216 | gap 2, overlap 418845 418846 418842 CGAGACCGCGCTGGC CGGCACGCCCAAC-GCG-GTGCGGG TGTT CTCGCACACGCAGTTCGGCCTGTCG TTCATGATGGTGACC TERM 329 420737 - 420751 + G 70 -9.2 -3.85698 | GTGCAGTCGGTCAAG GGCGTG ATG CGCGCC TTTATCGACCGCGAC RALTA_B0380 418640 - 421762 + | PUTATIVE CATION EFFLUX SYSTEM TRANSMEMBRANE PROTEIN TERM 330 421768 - 421797 + F 87 -17.2 -2.89564 | gap 1, opp_overlap 421768 TTCCGGCTGATGACA GCGT-CGCGCGGG GCATG CCCGCGCGCACGC TGTCTGGCATCGCAG TERM 331 421797 - 421768 - f 84 -17.2 -2.78384 | gap 1, opp_overlap 421768 TTCCGGCTGATGACA GCGT-CGCGCGGG GCATG CCCGCGCGCACGC TGTCTGGCATCGCAG TERM 332 421830 - 421851 + F 100 -14.4 -5.21709 | ATGGCGATGCATGGA CGCCGCCC CTTGCC GGGCGGCG TTTTTTCATGTCGAG RALTA_B0381 422075 - 422689 + | hypothetical protein RALTA_B0382 422792 - 422995 + | putative general stress response protein, CsbD-like TERM 333 423020 - 423033 + F 100 -9.5 -5.75342 | opp_overlap 423020 CAACGGTCTTGCAAA GCGCC TCCG GGCGC TTTTTTTTCGGACGA TERM 334 423216 - 423231 + F 75 -3.3 -4.95155 | AGGTAAACCCTAGTA GTCTA CATATA TAGAC TTTTTATACTGTCCC TERM 335 423907 - 423960 + G 71 -11.5 -3.6682 | gap 1 GCCGCGGGCGCGGAA GCGGCGGCCGCGCTGGCGCTGGCG GTGGGTG CGCCGGTGGCCGAGCTG-CGCCGC TTTGCCTGCGTGCCG RALTA_B0383 423304 - 424089 + | Putative transcriptional regulator, GntR family RALTA_B0384 424133 - 425695 + | putative Thiamine pyrophosphate-requiring enzyme; Benzoylformate decarboxylase, Acetolactate synthase isozyme II large subunit RALTA_B0385 426168 - 425758 - | hypothetical protein TERM 336 426243 - 426257 + H 76 -9.2 -4.00066 | overlap 426253 AGCACTACCGTCATT CCCGTG CAA CGCGGG TTTCTGCATTCTAGC RALTA_B0386 426392 - 427324 + | putative transmembrane protein RALTA_B0387 427729 - 427391 - | putative two-component response regulator receiver TERM 337 427493 - 427472 - G 77 -11.5 -3.85698 | opp_overlap 427476 427484 CGGCTTGCCGATAAA GCACGCGGC CCCC GCCGCCTGC GCGCGCGCTTCATAT RALTA_B0388 428948 - 427842 - | putative porin RALTA_B0389 429213 - 428935 - | conserved hypothetical protein (DUF1427); putative exported protein; putative membrane protein RALTA_B0390 430883 - 429243 - | conserved hypothetical protein (DUF894, DitE); putative membrane protein RALTA_B0391 431344 - 430880 - | conserved hypothetical protein; putative membrane protein, putative DoxX domain RALTA_B0392 433329 - 431392 - | putative amidohydrolase; putative exported protein, putative metallo-dependent hydrolase domain RALTA_B0393 434155 - 433334 - | non-heme chloroperoxidase (Chloride peroxidase) (CPO-F) (Chloroperoxidase F) RALTA_B0394 434900 - 434214 - | putative hydrolase protein, putative isochorismatase hydrolase, putative cysteine hydrolase RALTA_B0395 435309 - 435968 + | putative response regulator receiver, luxR cheY family TERM 338 436862 - 436888 + G 75 -10 -3.97947 | overlap 436863 CGCTGCCAGGCGGAC TGGCGCGAACGC GGC GAGATCGCGCCG TTTGTCCTCGATGCC TERM 339 438197 - 438229 + G 73 -9.7 -3.88291 | opp_overlap 438188, overlap 438198 ATCGAACGCGCGGCC GGCCATCCGCTGCCG GAG CCGCAGCGCGTGGCG TTTGTCGAGGTGCTG RALTA_B0396 436025 - 441193 + | putative SENSOR HISTIDINE KINASE with GAF and Pkinase domains TERM 340 441220 - 441196 - T 81 -13.6 -3.57144 | gap 1 GGCGGCAGCCTGAAA GTC-CGCCGCG GCGG CGCGGCGGGAC GGTCAGGTTCACCCG RALTA_B0397 441914 - 441252 - | putative lipoprotein RALTA_B0398 442912 - 441926 - | putative acid phosphatase, putative 5'-nucleotidase (surE-like) mhpE 444113 - 443088 - | 4-Hydroxy-2-oxovalerate aldolase; utilizes MHP (HOA) TERM 341 443992 - 444026 + g 77 -10.7 -3.86202 | gap 1 GTGACTTCGATCAGC GGCA-CGCCGGCGG CATCGAGC CCGCGGGCGATGCC TTTCATCTGCTCCAG mhpF 445030 - 444125 - | acetaldehyde dehydrogenase, NAD-binding TERM 342 445088 - 445067 - R 74 -12.3 -3.4376 | gap 1, opp_overlap 445080, overlap 445069 AGACAGTCAGGAGAA CA-CGGCGGC ACA GCCGCCGATG CCGGTGATATGCATG TERM 343 445085 - 445069 - R 84 -15.1 -3.28714 | opp_overlap 445080, overlap 445067 ACAGTCAGGAGAACA CGGCGGC ACA GCCGCCG ATGCCGGTGATATGC mhpD 445870 - 445058 - | 2-keto-4-pentenoate hydratase TERM 344 445891 - 445850 - G 72 -8.6 -4.09864 | overlap 445852 445853 ATTCATGGCGGAAAA GAGGGCGGTCCGCGC-GCCC ATGC GGGCGGCGCGGACCGGGA-C GAGGGTCAGAACGAA TERM 345 445890 - 445852 - G 74 -12.3 -3.64716 | gap 1, overlap 445850 445853 TCATGGCGGAAAAGA GGGCGGTCCGCGC-GCCC ATGC GGGCGGCGCGGACCGGGA CGAGGGTCAGAACGA TERM 346 445889 - 445853 - G 74 -15.8 -2.78508 | gap 1, overlap 445852 445850 CATGGCGGAAAAGAG GGCGGTCCGCGC-GCCC ATGC GGGCGGCGCGGACCGGG ACGAGGGTCAGAACG RALTA_B0402 447468 - 445897 - | conserved hypothetical protein (DUF1302); putative exported protein RALTA_B0403 448420 - 447632 - | putative short-chain dehydrogenase/reductase (SDR family) TERM 347 448337 - 448318 - G 77 -15 -3.19602 | overlap 448316 GGCCGCACACGAAGA CCTGCGCG CCGG CGCGCAGG AAGGCCTCGCTGATG TERM 348 448677 - 448704 + G 70 -9 -3.85698 | overlap 448680 GCGCCTGCACTGCCT GGACACCGGCGC CGGC GAGCCGGTGGTC TTTATCCACGGCAGC mhpC 448549 - 449451 + | 2-hydroxy-6-ketonone-2,4-dienedioic acid hydrolase RALTA_B0405 449491 - 450276 + | putative short-chain dehydrogenase/reductase (SDR family) RALTA_B0406 450331 - 450690 + | steroid delta-isomerase TERM 349 451072 - 451127 + G 78 -16.2 -3.01712 | gap 2, overlap 451077 CTGCGAACTGTGTCC GCTACGCGAGCGCGTGCTGCGCGGCG TCGAAT CGCTGCGCAGCA--CGTTCGCGATGC TGTTGCCGAGCCCGG TERM 350 451077 - 451124 + G 74 -16.9 -2.73875 | overlap 451072 AACTGTGTCCGCTAC GCGAGCGCGTGCTGCGCGGCG TCGAAT CGCTGCGCAGCACGTTCGCGA TGCTGTTGCCGAGCC RALTA_B0407 450704 - 451321 + | putative HTH-type transcriptional regulator, TetR family RALTA_B0408 451438 - 451638 + | conserved hypothetical protein; putative exported protein TERM 351 451673 - 451655 - T 88 -17.4 -3.10164 | opp_overlap 451643 GCAGTGATGATGGAA CGGCCCGG GCT CCGGGCCG GTCACGCGCCGCTTG RALTA_B0409 452169 - 451690 - | hypothetical protein TERM 352 452297 - 452343 + r 77 -15.7 -2.63858 | gap 1, opp_overlap 452290 452295, overlap 452297 452320 452323 CATGCAAATTCAACC TCGGCCCAGCGCTCGCGCCGTC CGGC GGCGGCGTGCG-GCGGGGCCGC ATTCTCCATCTGCTG TERM 353 452297 - 452344 + r 79 -14.1 -3.40566 | opp_overlap 452290 452295, overlap 452297 452320 452323 CATGCAAATTCAACC T-CGGCCCAGCGCTCGCGCCGTC CGGC GGCGGCGTGCG-GCGGGGCCGCA TTCTCCATCTGCTGT TERM 354 452368 - 452392 + r 100 -20.1 -5.41143 | CTGCTGTGAGCTTGG TGCCGGCCATC GGG GATGGCCGGCA TTTTTTTGGGCGCTG RALTA_B0410 453663 - 452488 - | hypothetical protein RALTA_B0411 454616 - 453759 - | conserved hypothetical protein; putative exported protein TERM 355 454717 - 454684 - R 75 -14.5 -2.79796 | gap 1 CGCCATGGCAGCAGA CCGGCCGCGGCCACCG CGC CGGCGGC-GCGGGCGA GAAAATGTCTACGCG RALTA_B0412 456467 - 454755 - | putative Xaa-Pro dipeptidyl-peptidase, peptidase family S15 RALTA_B0413 457869 - 456556 - | Fumarylacetoacetase TERM 356 457604 - 457572 - G 75 -9 -4.12188 | gap 1 CCAGCAGCGCGAAAA GTCCGTGGCGCAAGG CCTG CCACGCGCC-CGGGC CGAGCCCCATCAGTG RALTA_B0414 458680 - 457877 - | putative cyclase TERM 357 458754 - 458782 + H 80 -14.6 -3.14931 | gap 1, opp_overlap 458743 CGAAGGCCGGTCCCG GCGTCT-GCCGGC CGAT GCCGGCGAGGCGC TTGCTACACACTGAC RALTA_B0415 458991 - 459647 + | putative transcriptional regulator, TetR TERM 358 459717 - 459762 + F 73 -8.1 -4.07885 | CGGATACATACTTCT TTCCGGCCCTCCTCGCGGC CCCGGATT GCCGCTGGTTGGGCCAGAA TTTTCAGCGAGCCTG RALTA_B0416 459752 - 460045 + | hypothetical protein RALTA_B0417 460116 - 461402 + | conserved hypothetical protein; putative exported protein TERM 359 461412 - 461437 + F 81 -15.4 -3.06696 | opp_overlap 461402 AAGTAGGCGGGACCG GCGGCGGGGG CATGGA CTCCCGCCGC TATCTTCCGCGCAGA RALTA_B0418 461748 - 462704 + | hypothetical protein RALTA_B0419 462757 - 464142 + | hypothetical protein RALTA_B0420 464144 - 466222 + | hypothetical protein TERM 360 467072 - 467120 + G 71 -10.8 -3.61178 | gap 1, opp_overlap 467048, overlap 467036 467073 ACCGCCGCGATGGCG ACGCGCTGCGGGCGGCCTTGCTC GAGC GGGTCCGG-CGCCTGCGGCGCGG TTTGCGCTGGCTGGC RALTA_B0421 466306 - 467445 + | putative 8-amino-7-oxononanoate synthase RALTA_B0422 467423 - 468235 + | hypothetical protein RALTA_B0424 470374 - 469010 - | putative two-component signal transduction system ATPase, Sigma-54 interaction and FIS domains RALTA_B0423 468232 - 469065 + | putative metal-dependent hydrolase, Amidohydrolase 2 family RALTA_B0425 471648 - 470764 - | putative transcriptional regulator, LysR family argC 471746 - 472720 + | N-acetyl-gamma-glutamyl-phosphate reductase RALTA_B0427 473073 - 472714 - | hypothetical protein RALTA_B0428 473456 - 473076 - | putative transcriptional regulator, TetR RALTA_B0429 473991 - 473758 - | putative Transcriptional regulator, HTH TERM 361 474003 - 474013 + r 72 -4 -4.65916 | TCATTGTTCCTCAGA CAAA TCC TTTG TTTTCTTCGGCTACC RALTA_B0430 474570 - 473998 - | hypothetical protein RALTA_B0432 474673 - 475287 + | putative outer membrane protein, OmpA motif RALTA_B0433 475461 - 476090 + | putative HYDROLASE PHOSPHATASE PROTEIN, Haloacid dehalogenase-like hydrolase TERM 362 476119 - 476103 - T 71 -9.4 -3.82031 | TGAACCATCACCAAA GCGCCA GGCAG TGGCGC CCTGAGGTCAACCAA gst 476735 - 476127 - | glutathione S-transferase TERM 363 476472 - 476487 + g 95 -6 -5.40072 | overlap 476457 476456 GCGCTCCAGCGTATT GCACGC CGGA GCGAGC TTTTTTTCCGGGGCC TERM 364 477019 - 477036 + H 74 -12.7 -3.25823 | ACTCCGACTGACCTC GCCGGAG GTGG CTCCGGC TTCATCTGGAGGACA fdh 477054 - 478271 + | S-(hydroxymethyl)glutathione dehydrogenase (Glutathione-dependent formaldehyde dehydrogenase) (FDH) (FALDH) RALTA_B0436 478567 - 478268 - | hypothetical protein copJ 478577 - 479098 + | Cytochrome c, class I precursor; putative Gluconate 2-dehydrogenase cytochrome c subunit TERM 365 479168 - 479141 - f 90 -17.8 -3.07895 | opp_overlap 479141 CGCATCCGGAACACA TGCCGCGGGTCT TGTG AAACCCGCGGCA TTTTTTTCTACACAG TERM 366 479141 - 479168 + F 100 -15.6 -5.60993 | opp_overlap 479141 CGCATCCGGAACACA TGCCGCGGGTCT TGTG AAACCCGCGGCA TTTTTTTCTACACAG gdhB 479535 - 480983 + | Quinoprotein glucose dehydrogenase-B precursor (pqq) pqqA 481055 - 481135 + | coenzyme Pyrroloquinoline quinone (PQQ) synthesis protein A, putative precursor TERM 367 481684 - 481662 - g 72 -9 -4.07687 | overlap 481663 ACTGTGGCTTGAAAA TCCGGAGGCC TTC GGCCTCGGGG GGGTACCGGAAGATA pqqB2 481147 - 482076 + | coenzyme Pyrroloquinoline quinone (PQQ) synthesis protein B pqqC2 482069 - 482827 + | coenzyme Pyrroloquinoline quinone (PQQ) biosynthesis protein C precursor pqqD2 482815 - 483087 + | coenzyme Pyrroloquinoline quinone (PQQ) synthesis protein D pqqE2 483080 - 484201 + | coenzyme Pyrroloquinoline quinone (PQQ) synthesis protein E; Fe-S oxidoreductase oprB 484194 - 485522 + | Porin B precursor (Outer membrane) (Glucose porin) transmembrane protein TERM 368 485880 - 485841 - T 79 -9.2 -4.11484 | TCCAAGGTGGGAAAA GCGGCAGCCGACAGATTG AATG CAATCTCCCGGCCCACGC AGAATCGGCAGTTCC RALTA_B0444 487002 - 485914 - | hypothetical protein RALTA_B0446 487795 - 487037 - | putative aldolase protein, putative Class II Aldolase and Adducin N-terminal domain RALTA_B0447 489185 - 487857 - | putative tartrate transporter, MFS family RALTA_B0448 489585 - 490157 + | Putative transcription regulator, Crp family RALTA_B0449 490975 - 490274 - | putative dehydrogenase protein RALTA_B0450 491605 - 491111 - | conserved hypothetical protein, COG1917 RALTA_B0451 491825 - 491586 - | hypothetical protein TERM 369 492227 - 492245 + G 100 -3 -5.60993 | TGCCCAACGCCGCTA TGCCGCGT CGC ACTCTGCA TTTTTTTGTCGAAGC RALTA_B0452 491983 - 492858 + | putative transcription factor, putative Helix-turn-helix, AraC type domain TERM 370 492880 - 492894 + T 74 -9.2 -3.96148 | GGCTCCTGGCAAGTT GGGCGC AGT GCGCTC TTTGTCGTCAAGCAA RALTA_B0453 493827 - 492937 - | putative transcription regulator protein, putative LysR substrate binding domain RALTA_B0454 493977 - 494369 + | putative carboxymuconolactone decarboxylase protein TERM 371 494560 - 494522 - T 100 -10.3 -4.9645 | gap 1, overlap 494524 ATGACAAGAATAAAA GGCGGTAGCCCCCAGACA TGCC TGCGT-GGGGCTACCGGC GTCGACGCGACGACA RALTA_B0455 495435 - 494584 - | hypothetical protein RALTA_B0456 496877 - 495642 - | putative FMN oxidoreductase RALTA_B0457 497143 - 496931 - | hypothetical protein TERM 372 497086 - 497062 - G 100 -21.5 -5.36441 | opp_overlap 497057 CCGTCACATAAAAAA GCCCGCCACGA AAC TCGTGGCGGGC AGGACTGCATTTTTT RALTA_B0458 497942 - 497181 - | putative Non-heme haloperoxidase, putative Alpha/beta hydrolase domain RALTA_B0459 498229 - 498681 + | putative transcriptional regulator, MerR family domain iorA2 498900 - 499367 + | isoquinoline 1-oxidoreductase (alpha subunit) oxidoreductase protein iorB2 499364 - 501661 + | transmembrane isoquinoline 1-oxidoreductase (beta subunit) oxidoreductase protein RALTA_B0462 501942 - 502556 + | hypothetical protein RALTA_B0463 502915 - 503289 + | conserved hypothetical protein; putative exported protein RALTA_B0464 503641 - 503294 - | conserved hypothetical protein; putative exported protein TERM 373 503830 - 503872 + r 91 -4.6 -5.29782 | gap 1, overlap 503853 CGGGCATCGGCCTAG CGCCTGCG-GCCGGCACGG GGTGAG CCGCGGCGGTTCGGCGGCG TTTTTTCTGGGTGTC RALTA_B0465 504725 - 503949 - | putative thioredoxin, DSBA oxidoreductase family TERM 374 504094 - 504067 - G 72 -3.2 -4.66537 | overlap 504074 504082 CCGTTGAACATAAAA CAGGGAACGCCA AGAC CGGCGCGCGCCG GCGGGTCGAGCGGGC TERM 375 505010 - 505021 + G 70 -3.6 -4.41348 | overlap 505008 ACCGTCCCCATCTCC GTCG TCAA CGGC TTTCTTTGCGGCGCC RALTA_B0466 504956 - 505975 + | putative transcriptional regulator, AraC family TERM 376 506041 - 506099 + F 89 -11.4 -4.386 | overlap 506043 CCGTTCCCGCCACCA CGGGCGGCTTCGCGTGCGCATGGCGCGG CTG CCGCGGCACATGCGCGCAAAGCGGCAGG TTTTGTCAGCGATTG RALTA_B0467 506214 - 506678 + | putative oxidoreductase nodN-like, MaoC-like domain TERM 377 507016 - 507045 + G 71 -11.3 -3.57144 | GTCCTGGATGGCTCG GCGCCGTTGCCGT CGGC GCGGGACCGGCGC TTTGGCGATGCCGCC phaC2 506803 - 508494 + | Poly(3-hydroxyalkanoate) polymerase 1 (PHA polymerase 1) RALTA_B0469 508578 - 509018 + | conserved hypothetical protein, putative phasin domain TERM 378 509058 - 509020 - f 100 -19.7 -3.97368 | gap 2, overlap 509021 GCCCCAAGGCATAAA CGCGGCGGGCATGGCCGGC GCG ACCG-CCATGCCCG-CGCG CCAACGTCTCCAGGA TERM 379 509059 - 509021 - f 93 -19.7 -2.981 | overlap 509020 CCCCAAGGCATAAAC GCG-GCGGGCATGGCCGGC GCG ACCG-CCATGCCCGCGCGC CAACGTCTCCAGGAC phaZ2 509081 - 509938 + | Poly(3-hydroxyalkanoate) depolymerase (PHA depolymerase)(PHB depolymerase) RALTA_B0471 510497 - 509925 - | putative heat shock protein, dnaJ domain RALTA_B0472 510868 - 510638 - | hypothetical protein RALTA_B0473 511221 - 511006 - | hypothetical protein TERM 380 511044 - 511055 + g 71 -2.2 -4.61566 | overlap 511039 CAATGTTCTTGTCGA CGGT CTCG ACTG TTTTCTGCTTTGGGC RALTA_B0474 512357 - 511218 - | putative transcriptionat regulator, LuxR family TERM 381 512373 - 512431 + r 100 -26 -4.15833 | GGTCGAGGCGATTCG GTGGGCCGCCGGCGTACTCCCTCTCCCG CAG CGGGAGAGGGAGTACGCAATCGGTCAGC TTTTCCCATCGTACT cysN-cysC 514401 - 512479 - | bifunctional enzyme: ATP-sulfurylase large subunit (Sulfate adenylate transferase)(SAT) and Adenylyl-sulfate kinase (APS kinase) (ATP adenosine-5'-phosphosulfate 3'-phosphotransferase). cysD1 515297 - 514401 - | ATP-sulfurylase, subunit 2 (ATP:sulfate adenylyltransferase) TERM 382 516100 - 516154 + G 70 -9.2 -3.85698 | gap 3, overlap 516100 516139 516141 516142 CGACGCCAACGGCAA G-CCGCC-CGCGCTG-AGCGCGGAGCG CCTG CACGCCGGCCTGCAGCGCGCGGCGGGC TTTGTCGAGGGCACC RALTA_B0477 515510 - 516622 + | hypothetical protein RALTA_B0478 516619 - 517794 + | putative hydrolase RALTA_B0479 517823 - 518614 + | putative Short-chain dehydrogenase/reductase SDR RALTA_B0480 518634 - 519608 + | conserved hypothetical protein; putative phosphoesterase ribAB2 520844 - 519744 - | RIBOFLAVIN BIOSYNTHESIS BIFUNCTIONAL PROTEIN : GTP CYCLOHYDROLASE II AND 3, 4-DIHYDROXY-2-BUTANONE-4-PHOSPHATE SYNTHASE (DHBP SYNTHASE) RALTA_B0482 521809 - 520841 - | putative esterase/lipase; putative exported protein TERM 383 521579 - 521546 - G 90 -13.9 -4.0162 | gap 1, opp_overlap 521564, overlap 521566 GCCGCACAGCACAAA GCCGCCGCCG-TGG AAGTACA CCAGCAGCGGCGGC GCAGCGCCGTCGCCG TERM 384 521598 - 521566 - G 82 -18.3 -2.90075 | opp_overlap 521564, overlap 521546 CGCCGTGGAAGTACA CCAGCAGCGGCGGCG CAG CGCCGTCGCCGCAGG CCTGTTCCGGTCGAT TERM 385 521911 - 521868 - R 78 -12.2 -3.75153 | gap 1, opp_overlap 521892 521907 GGCCTGGAACGCAAA CGACGGCGCGCTGCCCGCGGC AAT GCCCTGCGC-GCGCGCCAGCG CCGCGTGCGCGGCCT RALTA_B0483 522665 - 521850 - | putative oxidoreductase/dehydrogenase TERM 386 522705 - 522685 - H 76 -9.6 -4.08692 | opp_overlap 522699 522702, overlap 522686 GAAGTCTCCTGAAAA CCGCGGCG TCCAT CGCCGCGC ATGGCTCCTTGTAGC TERM 387 522704 - 522686 - H 71 -13.1 -3.04894 | opp_overlap 522699 522702, overlap 522685 AAGTCTCCTGAAAAC CGCGGCG TCCAT CGCCGCG CATGGCTCCTTGTAG TERM 388 523063 - 523010 - H 93 -8.8 -5.24129 | overlap 523011 523020 523030 TCGGGGCACAAAAAA GGGCCACAGAGC-CCGCACAAGCCAG CGGC CCGGCTCGTCCGGAGCGCTGCG-CAC GCCACAATGGAGACA TERM 389 523063 - 523011 - H 71 -9 -3.73995 | gap 1, overlap 523010 523020 523030 CGGGGCACAAAAAAG GGCCACAGAGC-CCGCACAAGCCAG CGGC CCGGCTCGTCCGGAGCGCTGCGCAC GCCACAATGGAGACA RALTA_B0484 523091 - 524269 + | putative transcriptional regulator, LuxR family RALTA_B0485 524623 - 524279 - | putative Glyoxalase/ dioxygenase RALTA_B0486 524831 - 525979 + | putative Flavin-dependent oxidoreductase RALTA_B0487 526107 - 527369 + | putative Acyl-CoA dehydrogenase protein TERM 390 528072 - 528016 - g 85 -18.7 -3.01712 | GCTGGCGCCGCAAGA CGCGGCGC-GACCGCCGGCTCACGCTG GGCAA CAGCCTG-GTCGGCGGCCTGCGGCGCG CGCTGATGGACCGCG TERM 391 528348 - 528305 - g 83 -15.2 -3.61715 | gap 1, opp_overlap 528322, overlap 528307 GACGCCGCCCAACAA TACCGGCGAC-GCCATCCGCG CCG CGCAGACGGCCGGCGCCGGCG TGGCGCTGATGTCGC TERM 392 528346 - 528307 - g 91 -20 -3.38812 | gap 1, opp_overlap 528322, overlap 528305 CGCCGCCCAACAATA CCGGCGAC-GCCATCCGCG CCG CGCAGACGGCCGGCGCCGG CGTGGCGCTGATGTC TERM 393 528419 - 528408 - g 82 -5.8 -4.72986 | opp_overlap 528408, overlap 528410 528411 CAGGGCGAGGAAAAA CAGC GCGC GCTG TTTATCGAGCGCGCC RALTA_B0488 527394 - 529148 + | putative 3-oxosteroid 1-dehydrogenase RALTA_B0489 529145 - 529705 + | putative oxydoreductase, flavin reductase domain TERM 394 531059 - 531043 - g 79 -15.1 -3.31144 | TCTCGATGCCTATAA CGCCGCG GCG CGCGGCG AGACGCCCGACCCGG TERM 395 531384 - 531364 - g 72 -14 -3.21924 | overlap 531362 CCATCTCGCACAACA GCCTGCCG ACGGA CGGCAGGC GCATACCCACCAGGA RALTA_B0490 529724 - 531424 + | putative Fumarate reductase/succinate dehydrogenase flavoprotein RALTA_B0491 531408 - 532172 + | putative oxidoreductase, NAD(P)-binding domain TERM 396 532271 - 532304 + G 83 -14.6 -3.64703 | gap 1, overlap 532256 CCAGGCGCATTCGCT GGTCTTCGCGCTGCC GGACG GGCTGCGCG-AGACC TTTGCCTACCGCCCG RALTA_B0492 532200 - 533255 + | putative Flavodoxin reductase (ferredoxin-NADPH reductase); 2Fe-2S iron-sulfur binding domain RALTA_B0493 533257 - 534888 + | putative fatty-acid--CoA ligase RALTA_B0494 534903 - 535352 + | hypothetical protein RALTA_B0495 536317 - 535451 - | putative dehydrogenase/reductase SDR TERM 397 536171 - 536189 + g 74 -16 -2.75992 | overlap 536168 GGCGTGGATGGTGCC GGGCAGCG GCG CGCTGCCC TCCTGTTCGGTGCGG bphC 536580 - 537476 + | Biphenyl-2,3-diol 1,2-dioxygenase 1; extradiol ring-cleavage dioxygenase family TERM 398 537818 - 537848 + G 72 -13.8 -3.14132 | opp_overlap 537804 AGGCATGCTGCAGCT GGGCTTGCGCGCGG CCG CCGCGCGCCTGCCG TTCCTGCCGACGCGC gctA 537492 - 538382 + | Glutaconate CoA-transferase, subunit A gctB 538435 - 539199 + | Glutaconate CoA-transferase subunit B TERM 399 539662 - 539677 + G 70 -9 -3.92542 | GTGCGACCTGATCGT GGCATC GGAC GATGCC TTCTTTGCCGATCCG RALTA_B0499 539207 - 540097 + | putative Enoyl-CoA hydratase/isomerase TERM 400 540196 - 540218 + G 72 -6.9 -4.30014 | gap 1 GATGCGAAGCTGGTC GCCGCCAGCG GTAA CGCCGG-GGC TTTTGGCTTCCTGGC RALTA_B0500 540094 - 541173 + | putative 2-nitropropane dioxygenase, NPD TERM 401 541740 - 541780 + G 74 -12.6 -3.59979 | gap 2 GCGGCATCGGCATCT GCG-GCGCG-GCCGACATCA TCG TGGCGTCGGCGTGCGCGCGC TTTGGCGTGCCCGAG RALTA_B0501 541397 - 542182 + | putative Enoyl-CoA hydratase/isomerase TERM 402 542870 - 542843 - g 72 -9 -4.07568 | gap 1 CGTGCCGGTGGAAAA CCGGCTGGCGGCC GAG GGC-GCCGGCTGG CAGGTGGCGATGGCC TERM 403 543197 - 543242 + G 79 -14.5 -3.36273 | overlap 543199 GGCCGCCGAAGTCGC GCCCGCCGGCCAGCCGCCGGG TTCG CTCGGCCACTGGCTGGACGGC TTCCTGTTCGCGCAG RALTA_B0502 542172 - 543338 + | putative Acyl-CoA dehydrogenase RALTA_B0503 543358 - 544431 + | putative Acyl-CoA dehydrogenase RALTA_B0504 544432 - 545613 + | putative beta-ketoadipyl CoA thiolase TERM 404 545609 - 545651 + F 80 -5.5 -4.68593 | gap 1, overlap 545612 CGATTATTGAACGGT TGTAAGTTCGTCGTTCCCGC CTGC GCGGGAATGACGGTCGC-CA TTTTTGCGTGATCGC RALTA_B0505 545680 - 546555 + | putative reductase or dehydrogenase protein, Short-chain dehydrogenase/reductase SDR TERM 405 547634 - 547680 + G 85 -18.7 -3.09933 | CCAGCTCTATTTCAA GCGTG-CGCAGGCGGCCGGCCAG TGG CTGGGCGGC-GCCGGCGTCGCGC TTGCCTACATTGCCG RALTA_B0506 546567 - 547727 + | putative acyl-CoA dehydrogenase TERM 406 548597 - 548545 - g 87 -17.9 -3.28712 | gap 3 GGCCGCGCGCGACAA CGGC--AGCCAC-CGCGACGCGCTGG TGCG CCAGCGCATCGCGCGTGCCTGGGCCG GCCTGCGCGTGATGC RALTA_B0507 547724 - 548926 + | putative ACYL-COA DEHYDROGENASE OXIDOREDUCTASE TERM 407 549259 - 549280 + G 74 -13.7 -3.2614 | opp_overlap 549252 549253 ATCAACAACGCCGGC CTGGGCGGC TCGT GCCGCCTAG TTGATATGGACGATG RALTA_B0508 548923 - 549726 + | putative reductase or dehydrogenase protein, Short-chain dehydrogenase/reductase SDR TERM 408 549806 - 549775 - f 95 -15.8 -4.08216 | overlap 549776 TCACCCCTCGCAAAA GCTCCCCTCTCCCG CGCG CGGGAGAGGGGTGG GGGAGAGGGCCGGAG TERM 409 549805 - 549776 - f 91 -19.3 -3.04715 | overlap 549775 CACCCCTCGCAAAAG CTCCCCTCTCCCG CGCG CGGGAGAGGGGTG GGGGAGAGGGCCGGA RALTA_B0509 549927 - 550382 + | putative deshydratase, MaoC-like domain, nodN-like protein TERM 410 550826 - 550784 - g 73 -9.6 -3.92963 | GAACAAGCACAAGAA CAGCTATCGCGCCCAGTCCG AAG CGGTGCTGGCGCGCCAGCCG GCGGCCTACATGGCG RALTA_B0510 550398 - 551600 + | putative beta-ketoadipyl CoA thiolase with thiolase-like domain, phenylacetic acid degradation TERM 411 552591 - 552617 + G 70 -12.2 -3.37796 | CAGGGCGGCGTGCTG GTGATGTCCGCC GAC GGCGGACGCCGC TTCTCGGTGCTGCCG RALTA_B0511 551778 - 552740 + | putative Glycosyl hydrolase, BNR repeat (Asp-box) TERM 412 555151 - 555121 - g 72 -13.3 -3.21099 | gap 2, overlap 555123 555124 GGCGTGGAGCAGGAA GAGCGGGCCCGCGCC CGC GGCGCGG-CC-GCCC GGCCGGCCGGGGCTG RALTA_B0512 552769 - 555231 + | putative predicted exporter of the RND superfamily; putative membrane protein TERM 413 556133 - 556105 - g 79 -14.6 -3.32498 | gap 2 GACCGCACAGATGAA GGC-CGCC-GCGCC CAC GGCGCTGGCGCGCC TGGGCATCACCATGC RALTA_B0513 555254 - 556495 + | putative NADH:flavin oxidoreductase/NADH oxidase RALTA_B0514 556571 - 557647 + | putative oxydoreductase, Rieske (2Fe-2S) region RALTA_B0515 557650 - 558441 + | putative Short-chain dehydrogenase/reductase SDR RALTA_B0516 558729 - 558502 - | hypothetical protein RALTA_B0517 558794 - 559990 + | putative transcriptional regulator, LuxR family TERM 414 560096 - 560112 + F 84 -11.5 -4.23674 | ACACTGGCAGGCGTG GCGGCGC AGC GTGCCGC TTTCTCTTGCTCAAG TERM 415 560554 - 560569 + G 79 -4.7 -4.77036 | CATCCAGGCGCTGGA CCAGT ACGCCG ACTGG TTTTTCATGGTGGGC RALTA_B0518 560153 - 561646 + | conserved hypothetical protein, DUF1254 DUF1214; putative exported protein RALTA_B0519 561701 - 564103 + | putative arylsulfatase precursor aslB 565366 - 564194 - | arylsulfatase-activating protein TERM 416 564707 - 564650 - G 70 -8.5 -3.92373 | overlap 564651 GATGGCATTGAGAAA GTCGCCGTAGGCGCCG-GA-CGGGACCGA CCAT TCGGTCACGCTCCCGGCGCC-ACC-CGGC AAGGCCTGCGCCAGC TERM 417 564709 - 564651 - G 72 -15.4 -2.95102 | gap 3, overlap 564650 ATGGCATTGAGAAAG TCGCCGTA-GGCGCCG-GA-CGGGACCGA CCAT TCGGTCACGCTCCCGGCGCCACCCGGCAA GGCCTGCGCCAGCAC TERM 418 565561 - 565524 - R 100 -18.4 -3.75665 | overlap 565526 565527 GGACAGCGCAGGAAA CAGGCCAGGCCGGGCG AAGTCG CGCCCGGCCTGGCATC ACGATCCGGTCAGGT TERM 419 565559 - 565526 - R 100 -21 -3.46088 | overlap 565524 565527 ACAGCGCAGGAAACA GGCCAGGCCGGGCG AAGTCG CGCCCGGCCTGGCA TCACGATCCGGTCAG TERM 420 565558 - 565527 - R 100 -24.5 -2.67171 | overlap 565526 565524 CAGCGCAGGAAACAG GCCAGGCCGGGCG AAGTCG CGCCCGGCCTGGC ATCACGATCCGGTCA RALTA_B0522 566950 - 565571 - | conserved hypothetical protein; putative exported protein, DUF1329 TERM 421 566123 - 566156 + g 82 -15.9 -3.35996 | overlap 566147 CTGGTCGAAGCCGAA CTCCGGCGCCTGGCG CACG CGCCGCGTGCCGGGG TTGTAGATCCAGGTG TERM 422 566585 - 566615 + g 74 -12.6 -3.61398 | ATCGCGATGGCTCGG GTACACCGGCATCT TGA AGGTGTCGGGGTAC TTCTTGAACAACGCC TERM 423 567217 - 567245 + r 70 -12.4 -3.20382 | opp_overlap 567206 567212 567215 AGGAGGCAAAGAGCG CGTCGCCTAAGC GGCTG GCTAAGGCGGCG TTGGTGGCTCTGGCG TERM 424 567453 - 567496 + r 76 -8.1 -4.15061 | overlap 567452 567455 567455 TCTGGCACGGAGTGC GTCGC-TGCGCTCGCACGGCG TTGT CGC-GTGCGAGCCCAAGGGTC TTTCTCTCTCGCTTG TERM 425 567656 - 567630 - R 90 -8.7 -4.88407 | gap 1, overlap 567631 567634 CGACTGAACCAAAAA GGCAGGCCGGGT CCTT ACCCGGCCT-CA GGGCAACCTTGCGGC TERM 426 567655 - 567631 - R 74 -12.2 -3.52321 | gap 1, overlap 567630 567634 GACTGAACCAAAAAG GCAGGCCGGGT CCTT ACCCGGCCT-C AGGGCAACCTTGCGG TERM 427 567653 - 567634 - R 77 -15 -2.88788 | overlap 567631 567630 TGAACCAAAAAGGCA GGCCGGGT CCTT ACCCGGCC TCAGGGCAACCTTGC RALTA_B0523 568814 - 567687 - | putative ACYL-COA DEHYDROGENASE OXIDOREDUCTASE PROTEIN RALTA_B0524 570015 - 568828 - | putative ACYL-COA DEHYDROGENASE OXIDOREDUCTASE PROTEIN TERM 428 571177 - 571199 + G 74 -14.1 -3.29511 | overlap 571191 ATGGCGGTGGCGCCC GCGCTGGGC GCGAA GCCCGGCGC TTATCCGCGCCTGCG RALTA_B0525 570328 - 571902 + | Putative AMP-dependent synthetase and ligase; ATP-dependent AMP-binding enzyme family TERM 429 572390 - 572368 - g 72 -3.3 -4.56597 | CTTCCCGGCGAAAAA CGTGGGCGA ACTGG TCGACTACG CGCGAAAGCATCCCG RALTA_B0526 571955 - 572926 + | conserved hypothetical protein, UPF0065 TERM 430 572946 - 572978 + F 100 -14.8 -5.40072 | ATTTTTGGGGTTGGC GCGATGGGGCCGGC GGGAA GCCGGCCTTTTCGC TTTTTTTGGGGCGAG TERM 431 573123 - 573149 + F 71 -8.1 -3.86822 | gap 1 CTCGGATCGCAATGT TCTGTGTGTCCT TTAC AGG-CACGCAGA TTTATGCAGAAATTA RALTA_B0527 573329 - 573919 + | conserved hypothetical protein; putative exported protein TERM 432 574084 - 574124 + G 78 -18.2 -2.77899 | overlap 574080 CCGCGGCGAGACCGT GACCGGCAGCGGCGTCGC GCGCG GCGACGCCACTGCCAGCC TGATTCGTGGCGCAA RALTA_B0528 574031 - 574195 + | hypothetical protein RALTA_B0529 574192 - 574401 + | hypothetical protein TERM 433 574385 - 574411 + T 76 -13 -3.53012 | gap 1, opp_overlap 574402 GCCTGTCCGTTCGCG GGCACGCCGGC ATATAA GCCGGCG-GCC TTTCACACCGCCAGC RALTA_B0530 575360 - 574494 - | hypothetical protein RALTA_B0531 576227 - 575403 - | putative HpcH/HpaI aldolase/citrate lyase family TERM 434 575816 - 575794 - G 83 -14.8 -3.61178 | overlap 575798 TCGAGCGAGCCGAAA GCCAGCCGCG CCA CGCCGCTGGC GGACGCCACGGCGTC RALTA_B0532 577618 - 576236 - | Conserved hypothetical protein, putative enzyme MmgE/PrpD family RALTA_B0533 578850 - 577699 - | putative Formyl-coenzyme A transferase RALTA_B0534 580073 - 578904 - | Putative Acyl-CoA dehydrogenase TERM 435 580229 - 580212 - H 75 -14.1 -3.08679 | CGCCGCCATGCAAGA CGCCCGG CGAA CCGGGCG TGCAGGTGTGGCGCG RALTA_B0535 580562 - 581035 + | putative Mg(2+)transporter transmembrane accessory protein, MgtC family TERM 436 581078 - 581092 + F 79 -9.2 -4.12942 | overlap 581089 GGTCTGTGCCCTTGC GCGCCG AGC TGGCGC TTTTCACCGCTTTCC RALTA_B0536 581230 - 581733 + | hypothetical protein RALTA_B0537 582651 - 581749 - | Putative transcriptional regulator, LysR TERM 437 582662 - 582676 + H 78 -7 -4.56607 | overlap 582664 TGCATGGGCTTCTGT CAGGCC AAA GGCCAG TTTTGTGATTCGTGA RALTA_B0538 582843 - 583757 + | Putative Short-chain dehydrogenase/reductase SDR TERM 438 584589 - 584626 + G 71 -11.3 -3.53811 | overlap 584588 GGCAGGCCTATTGCC GCG-GCGTCGAGCGTCC CGATCT GGCCGC-CGACGCGCGC TTTGCCACCGGTCCC RALTA_B0539 583757 - 585001 + | putative formyl CoA transferase, L-carnitine dehydratase/bile acid-inducible protein F CoA-transferase family RALTA_B0540 585243 - 585449 + | hypothetical protein RALTA_B0541 586610 - 585468 - | Putative Transcriptional Regulator, AraC TERM 439 585697 - 585736 + g 86 -21.4 -2.78384 | overlap 585683 TCGTCGCGCAGGCGC CGGCGCAGCGTTTGCGGC GTGA GCCGCAGCCGCTGCGCCA TCTGCTCCAGCGACG TERM 440 586961 - 586940 - g 81 -2.2 -5.03145 | overlap 586928 586942 CAACGCGGCAAAAAA TGCCCGTG CCCGTC CACGGAAA ACCAAAGGAGACAGC RALTA_B0542 586831 - 586998 + | hypothetical protein RALTA_B0543 587093 - 588007 + | conserved hypothetical protein, UPF0065 RALTA_B0544 588072 - 589784 + | putative AMP-dependent synthetase and ligase, putative long-chain-fatty-acid-coa ligase protein RALTA_B0545 589853 - 590836 + | conserved hypothetical protein, UPF0065 RALTA_B0546 590860 - 591639 + | putative Enoyl-CoA hydratase/isomerase RALTA_B0547 591784 - 592971 + | putative Acyl-CoA dehydrogenase oxidoreductase protein TERM 441 593098 - 593069 - f 100 -16.5 -4.13282 | opp_overlap 593070 593075, overlap 593070 ACGACATGCGCAAAA TCGAAAGCCGGCA CCTG TGCCGGCTTTCGT GCTTATGGTTACAAA TERM 442 593070 - 593097 + F 93 -20 -2.89447 | opp_overlap 593070 593069, overlap 593075 CGACATGCGCAAAAT CGAAAGCCGGCA CCTG TGCCGGCTTTCG TGCTTATGGTTACAA TERM 443 593097 - 593070 - f 93 -20 -3.07487 | opp_overlap 593070 593075, overlap 593069 CGACATGCGCAAAAT CGAAAGCCGGCA CCTG TGCCGGCTTTCG TGCTTATGGTTACAA TERM 444 593075 - 593092 + F 83 -12.7 -3.87346 | opp_overlap 593070 593069, overlap 593070 TGCGCAAAATCGAAA GCCGGCA CCTG TGCCGGC TTTCGTGCTTATGGT TERM 445 593621 - 593636 + G 78 -6.1 -4.57073 | overlap 593582 TACCCACCACGATCC CAGGC TGTCCC GCCTG TTTTTCAACAAGGTC TERM 446 595086 - 595062 - g 79 -4.9 -4.72486 | GAGAAAGTGGAAAAA CCCGCGGGT ATCTCGA ACCCGAAGG ACTTCCGCAACGAGA RALTA_B0548 593448 - 595370 + | conserved hypothetical protein, putative PrkA serine protein kinase domain TERM 447 596067 - 596043 - g 75 -8.6 -4.21275 | gap 1, opp_overlap 596047 TGAACTGATGGAAAA GATGC-GGCAC CTGC GCGCCTGCATC GACCGCGTGCCGTTC RALTA_B0549 595408 - 596670 + | conserved hypothetical protein, DUF444 TERM 448 597558 - 597593 + G 73 -12.6 -3.51934 | gap 1, opp_overlap 597534 597533, overlap 597558 597556 CTGGCACCGTGGCAG C-GCGAGATCGTGCGCA TCG TGCGCAAGATCGCGCAG TATTTCTACCCGCAG RALTA_B0550 596796 - 598349 + | conserved hypothetical protein, putative SpoVR like protein RALTA_B0551 599390 - 598380 - | putative Acyl-CoA dehydrogenase RALTA_B0552 600583 - 599423 - | putative Acyl-CoA dehydrogenase RALTA_B0553 601099 - 600638 - | hypothetical protein RALTA_B0554 602319 - 601096 - | putative L-carnitine dehydratase/bile acid-inducible protein F TERM 449 601323 - 601312 - G 81 -7.2 -4.56597 | GGCGGTCTCGAAAAA GCCG GTGG CGGC CAGGTGCGGATCTTG TERM 450 602489 - 602518 + G 71 -9.9 -3.72588 | gap 1, overlap 602490 ATTTCCACCGCGCCG CCGAGCGGCTGCAC ATG GCGCAGCCGC-CGC TTTCGATCTCGATTC RALTA_B0556 602425 - 603315 + | putative transcriptional regulator, LysR family RALTA_B0557 604497 - 603337 - | putative transcription regulator protein, luxR family RALTA_B0558 607157 - 604803 - | putative MscS Mechanosensitive ion channel TERM 451 606780 - 606838 + g 93 -17.3 -3.57144 | GCCGATCAGCCCGGG CGCTGAGGCCGCGGCC-GGCGGCGCCATC GCC GCTGACGCCGCCAGGCC-CTGCCGCAGGG TTTGCAGCTGGCCCA TERM 452 606914 - 606956 + g 81 -7.5 -4.56597 | gap 1 GGTCCAGCGATTGCG CCAGCGGCATGCTGGCGGCG GGGG CGCTGGCGG-GGGCCGCGGG TTTTTCCGCCGACGC TERM 453 607344 - 607321 - H 74 -12.4 -3.50853 | gap 1, overlap 607322 CGGCTTCAACCAGAA CGCGGCC-GCG CAG CGCCGGCCGCA CGGGATCAAGAGACA TERM 454 607343 - 607322 - H 72 -13.7 -2.70298 | gap 1, overlap 607321 GGCTTCAACCAGAAC GCGGCC-GCG CAG CGCCGGCCGC ACGGGATCAAGAGAC RALTA_B0559 607403 - 608155 + | putative 3-HYDROXYACYL-COA DEHYDROGENASE TYPE II OXIDOREDUCTASE PROTEIN TERM 455 608169 - 608216 + F 81 -13.4 -3.63744 | gap 1, overlap 608170 608170 GAACCCGCGACTGGC CTGTCGCGATGGGCGGATCCGCG TCA CGCGAGTCCGCCCATGGC-ACGA TATTTTGGGAGACGC TERM 456 608170 - 608215 + F 84 -16.9 -2.78032 | gap 1, overlap 608169 608170 AACCCGCGACTGGCC TGTCGCGATGGGCGGATCCGCG TCA CGCGAGTCCGCCCATGGC-ACG ATATTTTGGGAGACG TERM 457 608170 - 608218 + F 83 -11.8 -4.07568 | gap 2, overlap 608169 608170 AACCCGCGACTGGCC TGTCGCG--ATGGGCGGATCCGCG TCA CGCGAGTCCGCCCATGGCACGATA TTTTGGGAGACGCGG TERM 458 609434 - 609396 - g 73 -8.1 -4.1711 | gap 2 AGCAGCCCGAAGAAA CGGCGCGCA-CCA-TCGAC GCC GACGGCTGGCTGCGCACCG GCGACGCCGGCTACA RALTA_B0560 608177 - 609817 + | putative AMP-dependent synthetase and ligase, putative o-succinylbenzoate--CoA ligase RALTA_B0561 610423 - 609932 - | hypothetical protein RALTA_B0562 611569 - 610571 - | conserved hypothetical protein; putative exported protein, UPF0065 TERM 459 611223 - 611262 + g 74 -14.8 -3.01712 | ACGTCATAGCTGGCG CCGGTGCCGGCGCGCAGC ACCA GCGGCGCGATGGCGACGG TGTTGGGCGCGAGCA TERM 460 611606 - 611591 - R 83 -11.8 -4.09243 | overlap 611592 CAGACCTCGGTAAAA CCGGGC ACCG GCCCGG GGGCGGTGCCGCGTG TERM 461 611619 - 611592 - R 75 -13.4 -3.05224 | gap 1, overlap 611591 AGACCTCGGTAAAAC CG-GGCACCGGCC CGG GGGCGGTGCCGCG TGGAGTGGAACCCGG RALTA_B0563 612773 - 611670 - | putative PORIN TRANSMEMBRANE PROTEIN TERM 462 613615 - 613647 + G 71 -9.8 -3.72576 | gap 2 GCTGGCATCGCTGGG CGTCGACGGGCTGGCG GAG CGC-GGCCCGGCG-CG TTTGCTCAGCGAAGC TERM 463 613852 - 613879 + G 70 -12 -3.37796 | gap 1 GCCGCCCGCCTGCGC CGCGCTGGCCGAA CGC TTCGGCCTGC-CG TTCTCGCTGATCCCG RALTA_B0564 613142 - 613975 + | putative Alpha/beta hydrolase TERM 464 614178 - 614142 - f 76 -7.3 -4.30576 | overlap 614146 GTTTCATTAGTAAAA CGTAGCGCGGC-AACCG GAAGA CGGCCAGCCGCAC-ACG CGGAACACGGTCCCC RALTA_B0565 614206 - 614526 + | hypothetical protein RALTA_B0566 614566 - 615627 + | putative oxidoreductase, putative Rieske (2Fe-2S) region RALTA_B0567 615620 - 616393 + | putative Short-chain dehydrogenase/reductase SDR RALTA_B0568 616557 - 617093 + | Conserved hypothetical protein, putative Cupin domain, putative membrane protein TERM 465 617704 - 617751 + G 78 -13.5 -3.65046 | gap 2, opp_overlap 617678 GCCGATGCGCTCTTC GCCATCGTGCAGCGCG-A-CCGC GAGC GCGGCTACGTGCTGCAGGAAGGC TTCTTCGAATCGAGC RALTA_B0569 617125 - 617976 + | putative transcriptional regulator, IclR family RALTA_B0570 617973 - 618785 + | putative Short-chain dehydrogenase/reductase (SDR) RALTA_B0571 618778 - 620493 + | putative Acetolactate synthase TERM 466 621090 - 621066 - g 86 -9.9 -4.62069 | overlap 621067 GCTGTACCCGAAAAA CGCCAACGTCG CCG CGACGGTGTCG CTGGCCGGCCTGGGG TERM 467 621095 - 621067 - g 70 -12.3 -3.3692 | overlap 621066 CTGTACCCGAAAAAC GCCAACGTCGCCG CGA CGGTGTCGCTGGC CGGCCTGGGGCTGGA nadX 620506 - 621306 + | L-aspartate dehydrogenase TERM 468 621862 - 621841 - g 73 -12.3 -3.42395 | gap 1, overlap 621839 621842 CCCATCAGCGAAACA CGCGCGCTGG TCG CCAGCGC-CG CCGGCACCTTCCAGT betB1 621535 - 623013 + | NAD+ dependent betaine aldehyde dehydrogenase RALTA_B0574 623037 - 624011 + | putative Glyoxalase/bleomycin resistance protein/dioxygenase RALTA_B0575 624126 - 625082 + | Putative oxidoreductase TERM 469 626072 - 626052 - g 71 -2.4 -4.56597 | overlap 626054 626066 TGGCTGGCGGAAAAA GGCCGGCT GGAAG AGGCGGAC GCCGCGCTGCGCGCC TERM 470 626119 - 626066 - g 87 -20.1 -3.01791 | gap 1, overlap 626054 626052 AGGCCGGCTGGAAGA GGCGGACGCCGCGCTGCGCGCCTTCG AGG CGCGGGCGCGCA-CGCCGCTGCCGCC GCCGGCCGATGCCAG TERM 471 626497 - 626528 + G 81 -13.1 -3.86346 | gap 2, overlap 626462 TGGTCGCGACCTTCT GCGCGCTGGCGATGG GCTT CC-TCGCCAGCG-GC TTTATCACCGCCTAC RALTA_B0576 625359 - 626780 + | putative MFS transporter, putative metabolite transporter RALTA_B0577 628095 - 626854 - | putative SUBSTRATE-BINDING PERIPLASMIC (PBP) ABC TRANSPORTER PROTEIN, ABC-type branched-chain amino acid transport systems family TERM 472 627002 - 627025 + g 83 -8.8 -4.56597 | gap 1 ATGTCGTGGATCATG CGGCCGTCCTC GCG GATG-CGGCCG TTTTTCGCGAAGAAG TERM 473 628305 - 628283 - R 79 -8.3 -4.25104 | opp_overlap 628284 628285 628298, overlap 628285 CTTGCGGGAGGAAAA CAGGCCGCG CTCGC CGCGGCCCT TGCTGCTTATGCCTG TERM 474 628303 - 628285 - R 81 -13.1 -3.73042 | opp_overlap 628284 628285 628298, overlap 628283 TGCGGGAGGAAAACA GGCCGCG CTCGC CGCGGCC CTTGCTGCTTATGCC RALTA_B0578 628839 - 628312 - | Putative Transcriptional Regulator, MarR family RALTA_B0579 629215 - 630156 + | conserved hypothetical protein, UPF0065 TERM 475 631521 - 631471 - g 90 -17.7 -3.40403 | gap 3 TGGCTGGGACGAGAA GCG-CGCCG-CACCGCG-CGGCAC CGGCAC GCGCCGGCGCGGTGTCGGCATCGC CGCGGCGATGCATGT hbaC 630191 - 632509 + | 4-hydroxybenzoyl-CoA reductase HbaC subunit, molybdemum cofactor-binding domain hbaD 632502 - 633368 + | 4-hydroxybenzoyl-CoA reductase HbaD subunit, FAD_binding subunit TERM 476 633433 - 633449 + G 70 -15.1 -2.71364 | opp_overlap 633427 633422 633425 633424 AGAACACCAGGTGCA GGCGCCG GCG CGGCGCC TGCTTGCCGACCTGC hbaB 633380 - 633856 + | 4-hydroxybenzoyl-CoA reductase HbaB subunit RALTA_B0583 633846 - 634595 + | putative CARBON MONOXIDE DEHYDROGENASE SUBUNIT G, COG3427 RALTA_B0584 634656 - 635561 + | Putative transcriptional regulator, IclR family TERM 477 635664 - 635617 - g 82 -6.1 -4.72386 | gap 3, overlap 635618 635619 CAAAGCATGCAAAAA GTGCGGGCGCCGCGGC-GGC-GCC CAT GGCTGCCAGGCGCGGCGGTGGC-C GTGGCGCTGGCGGCA RALTA_B0585 635596 - 636609 + | conserved hypothetical protein, UPF0065 RALTA_B0586 637477 - 636596 - | Putative transcriptional Regulator, IclR family TERM 478 637484 - 637467 - G 93 -14.1 -4.18197 | ACTGTCCATGGAAAA CGGCCGC GCAT GCGGCCG TGCTGGCATGGAACG RALTA_B0587 638648 - 637512 - | Putative oxidoreductase protein monooxygenase; FAD-domain TERM 479 638698 - 638684 - H 72 -4.3 -4.56597 | TTTGTTGTTCAAAAA TGAAC TAGAT GTTCA TAAAAATATATGGGT TERM 480 638849 - 638877 + G 74 -13.8 -3.30474 | opp_overlap 638838 638844 638847 AGGAGGCAAAGAGCG CGTCGCCTGGGC GGCTG GCCAAGGCGGCG TTGGTGGTTCTCGCG RALTA_B0588 638779 - 638988 + | hypothetical protein RALTA_B0589 639299 - 639057 - | hypothetical protein TERM 481 639582 - 639558 - R 76 -5.6 -4.56597 | gap 1, overlap 639559 639562 GCGCTCGGCCAAAAA GTGACCCGCCC AGCA GGGCGGAAC-C AGGCGTTTCAAAGGC RALTA_B0590 640890 - 639655 - | putative ACYL-COA DEHYDROGENASE OXIDOREDUCTASE RALTA_B0591 642081 - 640930 - | putative ACYL-COA DEHYDROGENASE OXIDOREDUCTASE; FAD domain TERM 482 641601 - 641620 + g 70 -12.8 -3.30124 | GATGCGAGGCGAACG GCGCGCCG GCCA CGGCGTGC TTGTGGCCGCTGAGG TERM 483 642774 - 642748 - g 72 -6.5 -4.29738 | gap 1, overlap 642749 TGAGACCTATGAAAA CGCGCTGGCCGA CTGT CCTGCCA-CGCG CATCGACGACGAGGT RALTA_B0592 642335 - 643882 + | Acetyl-CoA synthetase; ATP-DEPENDENT AMP-BINDING ENZYME FAMILY-RELATED TERM 484 643900 - 643916 + F 76 -9.3 -4.07568 | opp_overlap 643895, overlap 643905 CATCGGCAAACGGTG CGCGGCC GCT GCCCGCG TTTTCGCCAGGGCAG TERM 485 643905 - 643934 + F 78 -12.2 -3.69323 | gap 2, opp_overlap 643895, overlap 643900 GCAAACGGTGCGCGG CCGCTGCCC--GCG TTTT CGCCAGGGCAGCGG TTTACGTCATAATGC RALTA_B0593 644053 - 646809 + | Putative Transcriptional Regulator, LuxR family RALTA_B0594 647490 - 646819 - | putative OXIDOREDUCTASE PROTEIN RALTA_B0595 648397 - 647522 - | Putative acyl-CoA hydratase, phenylacetic acid degradation TERM 486 647779 - 647725 - G 82 -20.1 -2.62616 | gap 2 CCATGCGCCAGATCA GCTGGCGCGAGATCGCCACCGAGACCG GCG CGGCATTGGCGGCGATCTCGCGC--GC AATCGCCTGCGCCGC TERM 487 648138 - 648149 + g 73 -7.2 -4.11216 | overlap 648109 GCGGTATCCGGGCTG GCGC CATA GCGC TTTTCGAAATCGAAG TERM 488 648993 - 649013 + G 74 -13.3 -3.28712 | opp_overlap 648993 648992 AAGGTGATCCACAAG TGCGTGGCG GTC CGCCATGCA TTGTCGGCCGAGCGG RALTA_B0596 648630 - 649601 + | Putative dioxygenase, related to 2-nitropropane dioxygenase RALTA_B0597 649606 - 650073 + | putative enzyme, Thioesterase superfamily RALTA_B0598 650218 - 651393 + | putative ACETYL-COA ACETYLTRANSFERASE (ACETOACETYL-COA THIOLASE) PROTEIN TERM 489 651476 - 651434 - T 76 -12.7 -3.48807 | gap 1, overlap 651435 651437 GCAGTAAAGGGAGAA GGACCGGCGGCGCGGGCA TGTCAAAG TGCCCGCGCCAGCAG-CC GGAGAAAAGATAAGG TERM 490 651476 - 651435 - T 78 -15.1 -2.68802 | overlap 651434 651437 CAGTAAAGGGAGAAG GACCGGCGGCGCGGGCA TGTCAAAG TGCCCGCGCCAGCAGCC GGAGAAAAGATAAGG TERM 491 651474 - 651437 - T 74 -14.1 -2.87996 | overlap 651434 651435 GTAAAGGGAGAAGGA CCGGCGGCGCGGGCA TGTCAAAG TGCCCGCGCCAGCAG CCGGAGAAAAGATAA TERM 492 651517 - 651490 - T 78 -9.8 -4.02581 | opp_overlap 651494, overlap 651485 651494 CCGGAGAAAAGATAA GGAATGGCCGCG AAAT CGCGGCCATTTT CATTTGGTGGCGAAG TERM 493 651494 - 651513 + T 100 -15 -4.58773 | opp_overlap 651490 651485 651494 AGAAAAGATAAGGAA TGGCCGCG AAAT CGCGGCCA TTTTCATTTGGTGGC TERM 494 651513 - 651494 - T 85 -15 -3.62613 | opp_overlap 651494, overlap 651490 651485 AGAAAAGATAAGGAA TGGCCGCG AAAT CGCGGCCA TTTTCATTTGGTGGC RALTA_B0599 652229 - 651555 - | Putative Phosphoglycerate/bisphosphoglycerate mutase RALTA_B0600 653063 - 652377 - | Putative transcriptional regulator, TetR family gstR 654172 - 653270 - | Putative transcriptional regulator, LysR family RALTA_B0602 654271 - 654921 + | putative glutathione S-transferase protein; gstA protein RALTA_B0603 654969 - 655943 + | putative Pyridoxamine 5'-phosphate oxidase-related, FMN-binding RALTA_B0604 656418 - 655978 - | hypothetical protein TERM 495 656365 - 656333 - G 72 -8.4 -4.07885 | CAGGCCGCCGCAAAA GC-TGCTGCGCCCAGC ACG GCGAGGCGC-GCACGC CTGCGTGCCAGAGAT RALTA_B0605 658135 - 656537 - | DNA polymerase III, epsilon subunit + GIY-YIG endonuclease (modular protein) TERM 496 658264 - 658238 - R 70 -10 -3.65812 | overlap 658239 CCCCTCGCAACACAA CGCGGCTCCTGC AAG GCAGGCGCAGCA AGGGTTGCGGGGTCG TERM 497 660437 - 660461 + r 73 -11.5 -3.66178 | opp_overlap 660437, overlap 660442 GGATTGGTTGTCAAA GGAAAGCGCTT ACG GAGTGCTTTCC TTTGGCATTGCCAAG TERM 498 661180 - 661169 - R 72 -7.2 -4.2354 | GAAAGGCGAAAAGAA CCCC GGGA GGGG AGTGAAATAGATCCT TERM 499 663803 - 663842 + r 89 -16.7 -3.53012 | opp_overlap 663809, overlap 663809 CCAGGCTCTTATTGT GC-AAAACCCCTCGACAGC GTGT GCTG-CGAGGGGTTTTTGC TTTGGCGCGGACGCA TERM 500 663809 - 663835 + r 100 -14.5 -4.98531 | gap 1, opp_overlap 663809, overlap 663803 TCTTATTGTGCAAAA CCCCTCGACAGC GTGT GCTG-CGAGGGG TTTTTGCTTTGGCGC TERM 501 663835 - 663809 - R 93 -14.5 -4.09685 | gap 1, opp_overlap 663809 663803 TCTTATTGTGCAAAA CCCCTCGACAGC GTGT GCTG-CGAGGGG TTTTTGCTTTGGCGC RALTA_B0607 665029 - 663881 - | putative MFS transporter; Major Facilitator Superfamily RALTA_B0608 665189 - 664968 - | hypothetical protein RALTA_B0609 666280 - 665273 - | conserved hypothetical protein; putative exported protein; UPF0065 TERM 502 666025 - 666053 + g 75 -10.1 -4.07885 | opp_overlap 666020 GGGCGACGAAGGCCG CGGCCACGGTGCC GCC GGCACCGGTGCGG TTTTCGACCACGATG TERM 503 666256 - 666233 - G 77 -15.2 -3.23216 | opp_overlap 666226 CGCCATGACCAGCAA GCCCGCCCGC CATT GCGGGCCGGC GTGCCAATACTTCGC TERM 504 666299 - 666322 + r 83 -13.1 -3.89614 | opp_overlap 666296 TGTCTCCAGATAGGT GCCGCGCCG TGAGTC CGGTGCGGC TTTGTCAGGGTTGCA napA2 669134 - 666411 - | Nitrate reductase; prokaryotic molybdopterin-containing oxidoreductase family; NasA/napA/narB subfamily TERM 505 667442 - 667389 - G 93 -16 -3.85698 | gap 3, opp_overlap 667440 CGGCGTGGCGACAAA GCGGGCGCGGC-CGTCGGCG-TGGGCG TAG CGGCCATCGCCGAAGAGCCGC-CGCGC ATCCTGCGTGCCTTG TERM 506 668125 - 668112 - G 78 -9.5 -4.18018 | GCCGGTCAGCGAAAA CGGGC CCAT GCCCG GCTGCCCGATGCGCC RALTA_B0611 670416 - 669175 - | nirB NH2 domain (NADH binding FAD binding) TERM 507 669308 - 669268 - G 70 -12.6 -3.36991 | gap 1, overlap 669266 669271 669300 GATCAGCTCGAAATA CCAGGCGCCGTCCTGCACG TCGC CGTACAGCACGGCACC-GA CCAGGCGTCCGTCCT TERM 508 669306 - 669271 - G 80 -17.6 -2.84801 | overlap 669268 669266 669300 CAGCTCGAAATACCA GGCGCCGTCCTGCACG TCGC CGTACAGCACGGCACC GACCAGGCGTCCGTC nirD2 670865 - 670482 - | nitrite reductase (NAD(P)H)nirD nirB 673453 - 670892 - | NADH-dependent nitrite reductase TERM 509 672814 - 672836 + g 71 -11.3 -3.64487 | GATGGGTGCCGTCCT CGCCGTCGA CAATC TCGACGGTG TTCTTGCCGGTGTGC TERM 510 673169 - 673222 + g 73 -16.2 -2.52464 | gap 3, opp_overlap 673163 673165 GTCATAGGACAGCGT CTCGCCGGTGGAGACCTTGACCGTGCG CGC CGCGCGGTCGA--TCTCCAC-GGCGCG TGCGTTCAGGCGCAG RALTA_B0614 674838 - 673519 - | putative nitrate transporter; Major facilitator superfamily MFS_1 TERM 511 673929 - 673890 - G 72 -13.4 -3.18023 | gap 1, opp_overlap 673889 673890, overlap 673888 GGATCAGCACGAACA GCAGCGTGGCGCGCGCGTC CAG GCCGCG-GCGGCGCGCCGC CTTGTCCGACAGCCA TERM 512 674904 - 674861 - R 100 -19.6 -4.85782 | opp_overlap 674861 674862, overlap 674862 TGCTCCAAAAACAAA TGGCGTCCCGCAAACCGGCT GTGA AGCCGGTTCAGGGGACGCCG TTGTCCTGACAGCCG TERM 513 674861 - 674904 + r 93 -17.4 -3.40403 | opp_overlap 674861 674862, overlap 674862 TGCTCCAAAAACAAA TGGCGTCCCGCAAACCGGCT GTGA AGCCGGTTCAGGGGACGCCG TTGTCCTGACAGCCG TERM 514 674903 - 674862 - R 100 -23.1 -3.50746 | opp_overlap 674861 674862, overlap 674861 GCTCCAAAAACAAAT GGCGTCCCGCAAACCGGCT GTGA AGCCGGTTCAGGGGACGCC GTTGTCCTGACAGCC TERM 515 674862 - 674903 + r 87 -18.7 -2.64099 | opp_overlap 674862 674861, overlap 674861 GCTCCAAAAACAAAT GGCGTCCCGCAAACCGGCT GTGA AGCCGGTTCAGGGGACGCC GTTGTCCTGACAGCC TERM 516 675156 - 675184 + r 70 -8 -4.07885 | gap 1, opp_overlap 675158 GGCACCAGCGGTAAG GACGGCCGG-GGC GTTA GCCGCCGGCGGGC TTTTGCACCGGGATG RALTA_B0615 675642 - 675169 - | putative transcriptional regulator, HxlR family RALTA_B0616 675721 - 676302 + | putative Acyl-CoA N-acyltransferase rhtA 677195 - 676323 - | transporter, similar to E.coli rhtA involved in threonine and homoserine efflux TERM 517 676850 - 676831 - G 70 -8.6 -3.86283 | gap 1, overlap 676835 GCAATCCACAGGAAA TCGATCGCG CGC CGCGA-CGA CAGCACCGCCACTGC RALTA_B0618 677752 - 677330 - | putative transcriptional regulator, Fur family TERM 518 677787 - 677831 + G 100 -16.5 -5.42862 | gap 1, opp_overlap 677787 677788 677790, overlap 677788 ATCTATTATCATTAA TGAGTCGCCGCGGTTTGCCA GTCGGA TGGCCG-CCGCGGCGACTCG TTTTTTTCGGGGTGT TERM 519 677788 - 677830 + G 100 -17.8 -3.84633 | gap 1, opp_overlap 677787 677788 677790, overlap 677787 TCTATTATCATTAAT GAGTCGCCGCGGTTTGCCA GTCGGA TGGCCG-CCGCGGCGACTC GTTTTTTTCGGGGTG TERM 520 678079 - 678058 - g 71 -11.5 -3.54951 | CACCGCATCATACAA CCCGCCCGA TGCC TCGGGCGCG ACCCGCACCGACACG fhuA4 677786 - 680023 + | TonB-dependent siderophore receptor, FERRICHROME-IRON RECEPTOR precursor RALTA_B0620 680034 - 681209 + | hypothetical protein RALTA_B0621 683100 - 681238 - | outer membrane DRUG EFFLUX LIPOPROTEIN; similar to P.aeruginosa oprM TERM 521 682719 - 682752 + g 77 -15.3 -3.18264 | gap 1, opp_overlap 682689, overlap 682745 682746 CCACGGTGGGGAACT GCGCCGCGCGCTGGAT CTG GTACAGCGCGCG-CGC TTCGTCGATGGCCAG RALTA_B0622 685101 - 683140 - | glycosyl transferase; similar to bcsA, catalytic unit (UDP-forming) of cellulose synthase RALTA_B0623 686444 - 685104 - | conserved hypothetical protein; putative exported protein TERM 522 685701 - 685665 - G 82 -11.3 -4.1552 | opp_overlap 685665, overlap 685629 685666 CATGGCGCTAACAAA GCCGCGCGAGCGCGCAG CGC CGTCGCGCCAGCGCGGA TCGTTGCGCAGGCTG TERM 523 685700 - 685666 - G 74 -14.8 -3.08991 | opp_overlap 685665, overlap 685629 685665 ATGGCGCTAACAAAG CCGCGCGAGCGCGCAG CGC CGTCGCGCCAGCGCGG ATCGTTGCGCAGGCT RALTA_B0624 687877 - 686468 - | hypothetical protein TERM 524 687939 - 687909 - R 80 -4.7 -4.83759 | gap 2, overlap 687910 687913 AAGCAAAGTCAAAAA GCATTC-C-CGCCGG CAT CCGGCGCATGGATGC CGGGCGAGCGTATCC RALTA_B0625 689789 - 688323 - | putative transporter; Major facilitator superfamily MFS-1 TERM 525 689235 - 689289 + g 90 -19.8 -3.14881 | opp_overlap 689225 689284 GAATACGCGCGCATC CAGCAGCACCAGGCTGAGCCCGGCAC CGA GTGCCGCGCCCAGCCAGAAGCTGCCG TTGATGGCAAGATTG TERM 526 689837 - 689809 - R 86 -13.7 -3.87318 | overlap 689810 AACCAGTATAGGAAA CGGGGGCCGCGGC ACG GCCGCGGCGCTCA GCGGTACAGCACGGT TERM 527 689836 - 689810 - R 77 -15 -2.91668 | overlap 689809 ACCAGTATAGGAAAC GGGGGCCGCGGC ACG GCCGCGGCGCTC AGCGGTACAGCACGG RALTA_B0626 691763 - 689835 - | putative TRAP-type C4-dicarboxylate transport system, large membrane protein component TERM 528 690393 - 690342 - G 71 -10.9 -3.62096 | gap 3 CTTGAGCACGCCAAA GGTCAGCTGGCGGTAGGCGGCG-GCC AGC AGCGCGCCGCCGAGCG--AGCCGACC GCGGCGGCCTCGGTG TERM 529 690682 - 690704 + g 72 -14.1 -3.14132 | GCAGGCGTGGCCGGT GCCGCGGCG GCCGG CGCTGCGGC TTCCTCCGACGGCGG RALTA_B0627 692389 - 691760 - | putative TRAP-type C4-dicarboxylate transport system, small membrane protein component TERM 530 692336 - 692288 - G 82 -16.2 -3.32343 | gap 1 CGCATAGCGCGAGAA CACTTCATAGCTGATCATCAGCG TGAG CGC-GATGATCAGCCACGAGGCG GCCTGGCCGACGAAG RALTA_B0628 693561 - 692407 - | putative TRAP-type C4-dicarboxylate transport system, periplasmic component TERM 531 693503 - 693445 - G 71 -11.8 -3.54741 | gap 4, opp_overlap 693496, overlap 693446 693493 GACGATGGCCGGAAA GCCCAAGGCGGCCGTTCCCGCGGCAGCGCC GGC GGCGCCGCC-CAGGAA-G-CCGCGCCGGG- ATACGACGCTGTCCC TERM 532 693503 - 693446 - G 78 -17.8 -2.7263 | gap 3, opp_overlap 693496, overlap 693445 693493 ACGATGGCCGGAAAG CCCAAGGCGGCCGTTCCCGCGGCAGCGCC GGC GGCGCCGCC-CAGGAA-G-CCGCGCCGGG ATACGACGCTGTCCC RALTA_B0629 694536 - 693841 - | hypothetical protein RALTA_B0630 694810 - 694601 - | hypothetical protein RALTA_B0631 695624 - 695157 - | Guanine deaminase; cytidine and deoxycytidylate deaminase family TERM 533 695979 - 695944 - g 88 -14.6 -3.72027 | ACGCCCGAGCAACAA CTGCGCGAAGCCGCGG CACG CGGCGACGCCGCGCAG GTCAGCGCGCTGCTG RALTA_B0632 695821 - 696522 + | conserved hypothetical protein; ankyrin repeat; putative exported protein RALTA_B0633 696631 - 697161 + | putative transcription regulator, MarR family TERM 534 697168 - 697190 + T 100 -11.9 -4.8622 | opp_overlap 697136 697169, overlap 697169 AGCATGTAAGCAACA ACGGCGGGC GCAAG GCCCGCCGC TTTTTCATTGCGAAG TERM 535 697189 - 697169 - T 91 -15.4 -3.82604 | opp_overlap 697168 697169, overlap 697136 GCATGTAAGCAACAA CGGCGGGC GCAAG GCCCGCCG CTTTTTCATTGCGAA TERM 536 697169 - 697189 + T 85 -15.4 -3.5125 | opp_overlap 697136 697169, overlap 697168 GCATGTAAGCAACAA CGGCGGGC GCAAG GCCCGCCG CTTTTTCATTGCGAA RALTA_B0634 697725 - 697210 - | putative ring-hydroxylating dioxygenase, beta subunit TERM 537 697966 - 697987 + r 78 -12.3 -3.73953 | CCCATCAGGTTGCCC TGGCGCAGC CGGT GCTGCGTCA TTTCCTCGGAATCGT RALTA_B0637 699214 - 698618 - | putative transcriptional regulator, XRE family kbl 699343 - 700542 + | 2-amino-3-ketobutyrate CoA ligase (glycine acetyltransferase) RALTA_B0639 700542 - 701498 + | putative NAD-dependent epimerase; possible UDP-glucose 4-epimerase cycH 702717 - 701503 - | Cytochrome C-type biogenesis protein ccmH 703187 - 702714 - | probable heme lyase, Cytochrome c-type biogenesis protein ccmG 703740 - 703198 - | periplasmic thioredoxin, cytochrome c-type biogenesis TERM 538 703388 - 703344 - G 75 -16.6 -2.89564 | gap 1, overlap 703346 CGGGCACGCCATAGA CACCG-TAGTCGATGCCCACG CGTC CGTCGGCATCGACCAGCGATG CGGTGTAGGGGTTGC ccmF 705767 - 703737 - | periplasmic heme lyase subunit with CcmH, transfers heme from CcmE to apocytochrome c, cytochrome c-type biogenesis ccmE 706237 - 705764 - | periplasmic heme chaperone, cytochrome c-type biogenesis ccmD 706413 - 706234 - | heme exporter protein D; cytochrome c-type biogenesis protein CcmD ccmC 707201 - 706410 - | ABC transporter, heme transfer protein, cytochrome c-type biogenesis ccmB 707890 - 707198 - | heme export protein (ABC superfamily, membrane), cytochrome c-type biogenesis ccmA 708537 - 707890 - | heme export protein (ABC superfamily, atp_bind), cytochrome c-type biogenesis napC 709121 - 708534 - | nitrate reductase, cytochrome c-type protein napB 709707 - 709180 - | nitrate reductase (NAP)small subunit, Diheme cytochrome c napB napA1 712228 - 709733 - | nitrate reductase, large subunit, in complex with NapB TERM 539 712163 - 712199 + g 85 -17.1 -3.16564 | opp_overlap 712137 GGCCGGCAGCGTGAC GCCGGCCACCGACGCCG TTG CGGCGACGGCGGTCTGC TTGATGAAATCGCGG napD 712563 - 712225 - | Periplasmic nitrate reductase accessory protein napE 712835 - 712671 - | Periplasmic nitrate reductase accessory protein TERM 540 712880 - 712860 - R 83 -5.3 -5.00616 | opp_overlap 712863, overlap 712863 GTCCTCGGCAAAAAA GGATCGGGC GCG GCGCGATGC GTTACACCATTAAAG TERM 541 712969 - 712920 - R 71 -12.6 -3.04322 | GCCAAGGTGTCAAGA CGGCACTTGCCGGTGCCGGCGC ACGCCG GCGCCAGATGCGGCATGGGCCG CAACGACCGCTGTGC RALTA_B0654 713435 - 713040 - | conserved hypothetical protein; putative exported protein TERM 542 713417 - 713427 + g 72 -8.2 -3.97834 | overlap 713407 TTGGTGCGGCGCCGG GGCG GGC CGCC TTTGTCATCGCGTTC serA1 714832 - 713561 - | D-3-phosphoglycerate dehydrogenase RALTA_B0656 715414 - 714887 - | putative lipoprotein RALTA_B0657 715707 - 715513 - | putative lipoprotein RALTA_B0658 718297 - 715844 - | putative TonB-dependent receptor TERM 543 718919 - 718864 - g 82 -16.9 -3.28924 | gap 3, opp_overlap 718866, overlap 718865 GATCGTGGTGGAGAA CCGGCCCGGCGCCGGCGGCACGCTGG TGGGAGG CCTGCTTGCCGCCG-CGC-GG-CCGG ACGGCTACACCATCG TERM 544 718923 - 718865 - g 77 -18.1 -2.57211 | gap 2, opp_overlap 718866, overlap 718864 ATCGTGGTGGAGAAC CGGCCCGG-CGC-CGGCGGCACGCTGG TGGGAGG CCTGCTTGCCGCCGCGCGGCCGGACGG CTACACCATCGGCCA RALTA_B0659 718577 - 719641 + | conserved hypothetical protein; UPF0065 RALTA_B0660 719638 - 720417 + | putative ABC transporter nucleotide-binding domain RALTA_B0661 720423 - 721442 + | conserved hypothetical protein; putative exported protein TERM 545 721598 - 721638 + G 85 -16.9 -3.59979 | gap 2 ACCAGCCGCAGGGCA GCGCGCT--CGACGCCGCC CGGGT GGCGGCGGCGGAAGCGCGC TTTGCGCTGGAGGCC TERM 546 721719 - 721745 + G 75 -6.5 -4.4891 | gap 1, overlap 721720 GGTGGCCACGCTGGT TGCG-GCGCTGG CGCG CCAGGGCACGCG TTTTATCCTGCTGGA RALTA_B0662 721456 - 722613 + | conserved hypothetical protein; putative exported protein TERM 547 723184 - 723202 + G 76 -3 -4.7373 | opp_overlap 723184, overlap 723186 TGCCGGGACCATGAA CTTCGTGA TCT TCCCGATG TTTTTCATCAGCTCG RALTA_B0663 722618 - 723448 + | putative transporter, ABC-2 integral membrane protein family RALTA_B0664 723445 - 724245 + | conserved hypothetical protein; putative exported protein RALTA_B0665 724242 - 725186 + | putative metal dependent hydrolase exaA2 725378 - 727147 + | Quinoprotein ethanol dehydrogenase; PQQ dehydrogenase family RALTA_B0667 727348 - 727671 + | putative cytochrome C precurseur; similar to cytochrome c-551 from Pseudomonas aeruginosa TERM 548 727996 - 728024 + T 77 -13.8 -3.27298 | opp_overlap 727985 727991 727994 AGGAGGCAAAGAGCG CGTCGCCTGGGC GGCTG GCCAAGGCGGCG TTGGTGGTTCGAACG pqqE1 729555 - 728380 - | Quinoprotein ethanol dehydrogenase; PQQ dehydrogenase family pqqD1 729799 - 729527 - | Coenzyme PQQ synthesis protein D pqqC1 730488 - 729796 - | Pyrroloquinoline-quinone synthase (Coenzyme PQQ synthesis protein C) pqqB1 731402 - 730485 - | Coenzyme PQQ synthesis protein B (Pyrroloquinoline quinone biosynthesis protein B) pqqA1 731570 - 731496 - | Coenzyme PQQ synthesis protein A (Pyrroloquinoline quinone biosynthesis protein A) TERM 549 732232 - 732210 - g 75 -5.4 -4.56775 | overlap 732212 ACGGCTGTTCAAAAA CGGGACACCG CGG CGGCGTGGCG CCGGCTCGAGCTGGA RALTA_B0673 731655 - 732590 + | Prolyl aminopeptidase TERM 550 732971 - 732924 - g 74 -15.5 -3.01791 | gap 2, opp_overlap 732938 ACGTGCTGGCCAACA CGGCCTTCGCC-GG-GCTGCGGC CGCG GCCGCAGTTCCTGGCGTCGGCCG CCACTGCCGCGTTGA RALTA_B0674 732590 - 733549 + | conserved hypothetical protein; putative metal dependent hydrolase RALTA_B0675 735583 - 733574 - | putative transcriptional regulator, Sigma-54 dependent family TERM 551 734429 - 734459 + g 70 -14.7 -2.72344 | opp_overlap 734458 GCCGGCGCGGCGCGC GCTGTCGGCGTGG ATGGC CCGCGCCAACAGC TCCTTGCCGGTGCCG TERM 552 735629 - 735661 + H 71 -12.5 -3.09516 | opp_overlap 735606, overlap 735631 GATCTTTGCGCGGGT CGCCGCCGTCCGCGC CAG GCGCGCTCGGCAGTG TTGCGTGGTGAAGCA TERM 553 735709 - 735739 + H 83 -12.4 -4.07568 | overlap 735722 TGGCATTCCGGGACA CCGCCGCCGCGCCG CAG CGATGCGGTGGCCG TTTTGGCCCGGCAAA TERM 554 735896 - 735911 + G 75 -5.4 -4.56597 | gap 1 CCTTGCTCTCGCTTT GCGCGTC CCT GAC-CGC TTTTTCCGCCGGCCC exaB 735856 - 736335 + | Cytochrome c550 protein; ethanol oxydation system TERM 555 737125 - 737083 - g 74 -11 -3.78775 | GCGCGCAGTATGAAA GCGCCCTCAAGGCGGGCGGC CAC GCCGCCAGCCGCTATGCCGC CAGCGATATCAGCGC RALTA_B0677 736392 - 737300 + | putative extracellular solute binding protein TERM 556 737971 - 738007 + GT 85 -14.4 -3.54424 | overlap 737974 GCTGACGGCGGTCGT CGGCGTGGTGGTGCTG CTGGT CGGCGCCACCACGGTG TTTGCCGAACTGCAG TERM 557 737974 - 738004 + GT 83 -16.9 -2.60813 | overlap 737971 GACGGCGGTCGTCGG CGTGGTGGTGCTG CTGGT CGGCGCCACCACG GTGTTTGCCGAACTG RALTA_B0679 739467 - 738595 - | putative Transcriptional Regulator, LysR family RALTA_B0678 737657 - 738676 + | Ribonuclease BN TERM 558 739991 - 739957 - g 82 -17.8 -3.01712 | CCGCTTCTGGGAACA CGCCGACCGCTGCGAC GCC ATCGTCGCGGTCGGCG GCGGCAGCGCCATCG TERM 559 740651 - 740674 + G 77 -14.6 -3.14344 | gap 1 GGGCCGTCGCTGCCC GCCGCGC-AGC AGC GCTTGCGCGGC TTCCTGCAAGGGCTG RALTA_B0680 739715 - 740806 + | putative alcool deshydrogenase phnB 740881 - 742185 + | 2-phosphonopropionate transporter; major facilitator superfamily TERM 560 742177 - 742229 + F 78 -11.9 -3.81488 | overlap 742198 ATCGCGGCGTTCATC CGCCGCTAGC-CAGGTGAGGCCGGC ACCGC GCCGGCC-CGCCTGCGACGGCCGCG TTGTCTTTCAACACA RALTA_B0682 742273 - 743718 + | NAD+ DEPENDENT ACETALDEHYDE DEHYDROGENASE RALTA_B0684 745427 - 744006 - | hypothetical protein TERM 561 744369 - 744332 - G 72 -6.1 -4.26903 | opp_overlap 744358 TCCAGCCTAGGAAAA CATCGCTGGCCGACTGC ATCA GCCGCTGACCGACGATG ACACGTTGGCCGTGG RALTA_B0685 746999 - 745722 - | putative lipid acyl hydrolase, patatin-like domain TERM 562 745927 - 745897 - G 71 -11.8 -3.61536 | overlap 745902 AAGCCAAGGTTGAAA TCAACGCCATCGCG CTG CGCGGTGGCATAGA TACGATAAAGGTCAC RALTA_B0686 747353 - 747135 - | hypothetical protein RALTA_B0687 747631 - 747362 - | conserved hypothetical protein; putative exported protein RALTA_B0688 749549 - 747873 - | putative ACYL-COA SYNTHETASE ligase PROTEIN; similar to alkK TERM 563 749647 - 749604 - R 73 -10.8 -3.61398 | gap 1, opp_overlap 749604 749603 CTCTGGCGGCAAGAA GGCCCCGGGCTGCGAATCGGG TCG CGCGGTCAGC-GCTCGGGGCC GTTGTTCAGGCATGC RALTA_B0689 750309 - 749830 - | hypothetical protein TERM 564 749974 - 749955 - G 78 -9.3 -4.26327 | overlap 749928 749952 CATCGACGAAAACAA GGTCACC CATCAC GGTGACC AGCGTCACCACGTAG RALTA_B0690 751441 - 750482 - | Taurine dioxygenase; TauD/TfdA taurine catabolism dioxygenases family RALTA_B0692 752693 - 751644 - | putative transcriptional regulator, AraC family RALTA_B0693 752901 - 753821 + | putative enzyme, alpha/beta hydrolase catalytic domain RALTA_B0694 754017 - 755291 + | putative transporter, Major facilitator superfamily MFS_1 RALTA_B0695 755583 - 755891 + | outer membrane lipoprotein fragment, RND efflux system TERM 565 755971 - 755947 - T 89 -11.5 -4.27316 | opp_overlap 755947 755946 755944 755949 GGTCTGAAGCGAAAA TAGCCCCTC TGTATGC GAGGGGCTA CTGTTTACAAGGATG RALTA_B0696 756352 - 756029 - | conserved hypothetical protein; putative exported protein TERM 566 757004 - 756982 - R 91 -16.3 -3.65902 | GCGACGCTACTTAAA GCGTGCCGG CCTTC CCGGCACGC ACCCGCCTTAATCTG phnA 758232 - 757012 - | Phosphonoacetate hydrolase; 2-phosphonopropionate hydrolase TERM 567 758982 - 759009 + G 71 -2.6 -4.55697 | gap 1, overlap 758982 758983 GGCATGCGTCGCTGC T-GCCGGTGCGCA CGC TGCGCTTCGACCA TTTCTTTGTCACGCT phnR 758345 - 759241 + | transcriptional activator; LysR family RALTA_B0700 759726 - 759316 - | hypothetical protein RALTA_B0701 760574 - 759882 - | putative transcriptional regulator, Crp family TERM 568 761375 - 761343 - g 93 -17 -3.53563 | gap 1, overlap 761344 AGATCCTGGCGCAAA GCGGCGGCAC-CGCG CTGA CGCGGGTGCCGCCGG CCGCCAGCGCCAACA TERM 569 761374 - 761344 - g 83 -20.5 -2.71924 | gap 1, overlap 761343 GATCCTGGCGCAAAG CGGCGGCAC-CGCG CTGA CGCGGGTGCCGCCG GCCGCCAGCGCCAAC RALTA_B0702 760712 - 761494 + | putative ALDOLASE PROTEIN TERM 570 762397 - 762363 - g 70 -12 -3.30159 | overlap 762364 GCAATGCCTGGACAA CCTGCGGCGCGCGC GAGAGGG GCGCGCGCTGCTGA ACCTGGTCGACCGGC RALTA_B0703 761497 - 762426 + | putative Glyoxylate/hydroxypyruvate reductase; 6-phosphogluconate dehydrogenase; hydroxyacid dehydrogenase phoD 764455 - 762437 - | similar to phoD; Phosphodiesterase/alkaline phosphatase Domain TERM 571 763345 - 763389 + g 74 -13.5 -3.25823 | overlap 763344 ACACCGGCGTCAGCG CGTTGCCCGCGGCCGCG ATCTTCTGCGC CTCGGCCGCGGCCAGCG TTGCTGTCGGCACGA TERM 572 764488 - 764545 + r 88 -7.7 -4.88067 | gap 4, overlap 764502 764503 TGCTGTCAGTCCATG CAGCGCGCAGC-CG-TG-CCCGGATGCCG CTTG CGGCA-CCGGGTCTTCGTGGGGCGTGCTG TTTTTCTGAATCGAT TERM 573 764503 - 764527 + r 76 -13.6 -3.1372 | gap 1, overlap 764502 764488 CAGCGCGCAGCCGTG CCCGGATGCCG CTTG CGGCA-CCGGG TCTTCGTGGGGCGTG TERM 574 764671 - 764620 - R 74 -10.6 -3.7732 | gap 1 TCGGTATAGGAAGAA GTCGACTGCCCGGCGGCGCCGCCGC CTC ACGGCAGCGCGGCGCGCCAG-CGGC GGCCGCGCACGGCGG RALTA_B0705 765803 - 764646 - | putative transporter, MFS_1 family TERM 575 765812 - 765861 + r 74 -12.1 -3.53091 | gap 1 TGTCCATGATGGACT CCCGTCGGTTGGACGGCCGCGG CATTGCA TCGCGGCCGTG-GGTCGGCGGG TTTCGAGGCGGGGCT RALTA_B0706 767161 - 766139 - | conserved hypothetical protein; putative exported protein; UPF0065 domain RALTA_B0707 768453 - 767200 - | putative hydrolase; Metallo-beta-lactamase superfamily; Alkyl sulfatase and related hydrolases domain TERM 576 768634 - 768688 + r 88 -17 -3.05596 | GCACCGTGCCGCTGC TGGCAGTTCCCGGCAGCCGCGCGCTG CGC TAACGCGCGCCAGGCGGGAAATGCCG TTCAGTGAAGGGATC RALTA_B0708 769741 - 768809 - | Putative transcriptional regulator, LysR family TERM 577 769904 - 769918 + H 77 -12.8 -3.62046 | ACATCGACGCCAACC GCCGGC CGC GCCGGC TTCTTCGGGGAGTGA RALTA_B0709 769940 - 771172 + | putative L-carnitine dehydratase/bile acid-inducible protein F; ACYL-COA TRANSFERASE-RELATED TERM 578 771307 - 771354 + G 83 -15.4 -3.66288 | gap 1, opp_overlap 771317 ATCGAGACCCTGGCC GCCGACGACAGCGTGCGCGCGGT GCT GCTGCGCG-GCGCCGACGGCGGC TTCTGTTCCGGCCTG RALTA_B0710 771169 - 771843 + | putative Enoyl-CoA hydratase/isomerase TERM 579 772968 - 773004 + G 77 -15.7 -3.14132 | opp_overlap 772966 CGCGCCGGAACCAGG GCGCTCCGCCTACGCCG CCG CGGCGTCGGCGCGCCGC TTCGTCACGCGCGGC RALTA_B0711 771856 - 773088 + | putative ACYL-COA DEHYDROGENASE OXIDOREDUCTASE PROTEIN TERM 580 773152 - 773182 + G 72 -14.7 -2.87132 | opp_overlap 773136 773149 773145 CGATGCAACGGACGA TCGCCGCATGCTG CGCGA CAGCGTGCGGCGC TATGTCGAACGCGGC TERM 581 773371 - 773357 - g 71 -11.4 -3.61398 | CTGCTGGCGGAAGAA CTGGGC CGC GCCCAG CCGGCCGAGCCGTGG TERM 582 774229 - 774184 - g 74 -13.2 -3.31144 | gap 1, opp_overlap 774186 CGGCCACTGCTACAA GCGCCTGGCGGCGCACGCCAA CCTCT TCGGCG-ACGCCGACTGGCAC TACGAGCGGCTGGCG RALTA_B0712 773132 - 774277 + | putative ACYL-COA DEHYDROGENASE OXIDOREDUCTASE PROTEIN RALTA_B0713 774356 - 775384 + | conserved hypothetical protein; putative exported protein; UPF0065 domain TERM 583 775450 - 775495 + G 73 -10.2 -3.94634 | overlap 775451 ACAGTGGATGGCGAT GGGCGTGGCCCTGGCCGCGG GCAATG CCGCGGCCGGCACCATGCAG TTGTTTGGCGTGGTC TERM 584 775909 - 775927 + G 70 -3.7 -4.4078 | overlap 775910 775911 CGCGGTGCAGTATTT CTCGCCC AAGTG GGGCGGC TTTTCCTTCGGCGCC RALTA_B0714 775424 - 776467 + | putative Porin, Gram-negative type RALTA_B0715 777076 - 776591 - | hypothetical protein RALTA_B0716 777422 - 777066 - | putative transcriptional regulator, arsR family TERM 585 777530 - 777496 - R 100 -27.3 -4.19238 | opp_overlap 777487 777485 CTTGCAAGGCCAAAA TGCAAGGCGCCCCGG ACCAG CCGGGGCGCCTTGCA GCCAGGGCCGTGCGT sorB 778208 - 777552 - | SULFITE:CYTOCHROME C OXIDOREDUCTASE (SUBUNIT B) OXIDOREDUCTASE PROTEIN sorA 779490 - 778219 - | SULFITE:CYTOCHROME C OXIDOREDUCTASE (SUBUNIT A) OXIDOREDUCTASE PROTEIN TERM 586 778266 - 778306 + g 71 -10.4 -3.75024 | gap 1, overlap 778264 778255 778304 CATTGCGGCGGTAGC CGGCGGGGTTCCAGTTGGC TTTT GCCGGCTGG-GTTTCGCCG TTGTTGCTGGTGGCG TERM 587 778507 - 778532 + g 74 -12.5 -3.56092 | gap 1 CTTCAGTTCGACGGC GCGGCCGGCCGG CAG CCTGCCG-CCGC TTTCCACGCTGGTGA TERM 588 780717 - 780743 + G 70 -8.7 -3.86015 | gap 1, opp_overlap 780710 GAGAACATCGGCATC GTGCGGGCG-AC GGGC GTGCGCTCGCGC TTTGTCACGGCGATG TERM 589 781016 - 781064 + G 74 -12.3 -3.61527 | CAACCTGCGCATCCT GGTGGGCAATGGCGTGGCGATGG GCG CCATCACCGCGGCGCTGCTCAAC TTCCTGTTTTTCCAT RALTA_B0719 779877 - 781148 + | permease; Xanthine/uracil family RALTA_B0720 781168 - 782616 + | putative hydrolase; ATRAZINE CHLOROHYDROLASE-RELATED RALTA_B0721 782613 - 783326 + | conserved hypothetical protein; putative membrane protein, DUF81 ISRta4.1 784690 - 783665 - | transposase IS110 family RALTA_B0723 786323 - 785286 - | putative transcriptional regulator, LacI family RALTA_B0724 787282 - 786377 - | putative ribonuclease; ribonuclease BN family TERM 590 787488 - 787463 - H 81 -7.5 -4.48741 | gap 1 CAACGCATCACAAAA GACGGC-GCATC GAC GGTGCAGCCGCC TCGACAGCCATGGAG nylB2 787509 - 788885 + | 6-AMINOHEXANOATE-DIMER HYDROLASE, Beta-lactamase family RALTA_B0726 789570 - 788962 - | putative Isochorismatase hydrolase TERM 591 790510 - 790495 - g 77 -11.8 -3.85817 | ACGCTGGCCGAGAAA GCCGGC ATGA GCCGGC GCAATTTCACGCGCC RALTA_B0727 789787 - 790758 + | putative transcriptional regulator, AraC family RALTA_B0728 791440 - 790751 - | putative membrane-associated phosphatase TERM 592 791182 - 791147 - G 87 -8.2 -4.7373 | gap 1 CGAGGCCAGCAAAAA GTGCAGGCCGACATCCG GAT CGGCCATGGGCC-GCAC GCGAAATGGCAGCCA TERM 593 791454 - 791477 + r 84 -8.2 -4.52589 | gap 1, opp_overlap 791454 791453, overlap 791458 ATCCCTCCCCCAAAG GCAGGGTGACT CGC GGTCAC-CTGC TTTTATATCGGCAGA RALTA_B0729 792116 - 791643 - | hypothetical protein RALTA_B0730 792430 - 792612 + | hypothetical protein RALTA_B0731 793003 - 794469 + | hypothetical protein RALTA_B0732 794485 - 795396 + | conserved hypothetical protein; putative exported protein RALTA_B0734 796695 - 795607 - | putative transferase; similar to caiB/baiF CoA-transferase family; Alpha-methylacyl-CoA racemase RALTA_B0735 797782 - 796790 - | conserved hypothetical protein; UPF0065 TERM 594 797818 - 797865 + r 84 -11.4 -4.1891 | gap 4, overlap 797821 TCGTATGGTGCTGTG GCCGGGATCCGGATGCCGGCGGCG ACCG CGCCGCCGGCA--CGG-TCA-GGC TTTCTGTTGCAGCGG RALTA_B0736 799041 - 797860 - | Acyl-CoA dehydrogenase TERM 595 799001 - 798985 - G 70 -9.3 -3.85698 | TTCTTCGTCGATAAA GCGGCGG ATG CCGGCGC GGGTCTCCAGCAGCA RALTA_B0737 800621 - 799068 - | putative acyl-CoA synthetase; AMP-dependent synthetase and ligase TERM 596 799122 - 799140 + g 78 -5.9 -4.57569 | overlap 799123 GCGCACGATCTTGCG GGCCAGC TTGCC GCTGGCG TTTTTGGGCAGCTCG TERM 597 801410 - 801356 - g 79 -18.5 -2.64794 | CCGAACCGCATATCA CGCTGCGCCAGCAGGTCGACGC-GGCG TTC CGCCAGCG-CGGCCTGCCGGAGCCGCA GCCGCGCATCGAGAT RALTA_B0738 800755 - 801648 + | putative transcriptional regulator, LysR family htrB 802584 - 801706 - | Lipid A biosynthesis lauroyl acyltransferase RALTA_B0740 803462 - 803016 - | hypothetical protein flhC2 804123 - 803530 - | Flagellar transcriptional activator RALTA_B0742 804479 - 804682 + | hypothetical protein TERM 598 804708 - 804737 + F 84 -13.5 -3.78329 | opp_overlap 804707 804704 CGGTTGCAAGACAAC GGCGGGTGCCCTT TGCT GATGGCGCCCGCC TTTGCATTGGTGCGG RALTA_B0743 804859 - 805674 + | putative RNA-binding domain; G/S rich motif RALTA_B0744 806530 - 805691 - | putative Short-chain dehydrogenase/reductase SDR TERM 599 805873 - 805904 + g 81 -12.3 -3.84406 | gap 1 GCATCGTGGCATCCA GGCCGATCCGGGCC ACCTC GGCG-GGATCGGCC TTCTTCTGCTGGCCG TERM 600 806364 - 806388 + g 100 -21.5 -3.84719 | overlap 806351 GTCACCTCGGCGCCT TCGCCGCGCAG TTG CTGCGCGGCGA TTTCGATTTGCGGCT RALTA_B0745 806787 - 806590 - | hypothetical protein TERM 601 806796 - 806832 + r 74 -13 -3.2963 | gap 2 CGACCACGCGCATCA GCCCGCGCGCCGTGCCGC CTA GCGG-ATCGCGC-CGGGC TTCTGAAGCAGTGAT RALTA_B0746 807442 - 806951 - | putative flavoprotein; putative NAD(P)H dehydrogenase (Quinone) RALTA_B0747 808557 - 807535 - | conserved hypothetical protein, UPF0065 TERM 602 808263 - 808312 + g 78 -12.7 -3.78934 | opp_overlap 808282 GGGTGTAGCCGTCCG GCGCGGCCTTGGCGACATAGTCG GTGC CGATGATGCCGCCGGCGCCGCCC TTGTTCTCGACCACC RALTA_B0748 809573 - 808623 - | conserved hypothetical protein, UPF0065 TERM 603 809368 - 809391 + g 74 -10.9 -3.78934 | GCCACGTGCTCGGTG GCCAGGCGC GTGCCG GCGCCAGGC TTGTTCTCGACCACC RALTA_B0749 810934 - 809600 - | conserved hypothetical protein DUF1254 TERM 604 810127 - 810089 - G 77 -10.9 -3.87815 | gap 1, opp_overlap 810090 810092, overlap 810092 TTCCACCGGCAGAAA CCAGCCGCCGCCCAGCGC GGAA GCTTTGGGCG-CGGCCAG TTCGGCATCGACATG RALTA_B0750 812240 - 810927 - | conserved hypothetical protein DUF1214 TERM 605 811666 - 811692 + g 72 -9.3 -4.07885 | CAGTCGGGTTGCTTC GCGCTGCCGCC CGACA GGCGGAAGCCC TTTTCGAAGGCGCTG RALTA_B0751 814423 - 812237 - | putative acetyl CoA synthetase; CoA-binding domain; Succinyl-CoA synthetase domain TERM 606 812741 - 812720 - G 78 -13.7 -3.54424 | gap 1, opp_overlap 812715 812735 812737, overlap 812672 812673 CTGCACCTGGGCAAA CGCG-GCGCG TGC CGCGCGCGCG TCGGCTACGTTCAGC TERM 607 813084 - 813110 + g 76 -13.6 -3.40403 | opp_overlap 813082 813079 TCGCGGAACACCAGC GCGCCGCGCGCT TCC AGCCAGCGGCGC TTGTCGTCGCCGACC TERM 608 813607 - 813563 - G 75 -5 -4.59773 | overlap 813567 813605 GCCGAGCCGGAAAAA GTCATCGA-GCGTATCGGCGCG GAA CACGCCG-TACTCATCGAACAC CGCCTGGTAGACCGC TERM 609 815171 - 815137 - g 82 -14.3 -3.7108 | gap 1, overlap 815165 ACCTGCACACGGAAA GCGCGGCGATCCCCGC CACC GCGGAAACCGC-GCGC CGCTTGAAGGTCGGG RALTA_B0752 814560 - 815309 + | putative transcriptional regulator; GntR family RALTA_B0753 815422 - 815775 + | hypothetical protein TERM 610 815818 - 815830 + F 72 -7.7 -4.11623 | opp_overlap 815817 CCCTGCAAATTAATG TGGAC ACT GTCCA TTTCGTTTGCTAGTC RALTA_B0754 815953 - 816435 + | conserved hypothetical protein DUF1579 RALTA_B0755 818712 - 816439 - | putative Phospholipase D/Transphosphatidylase RALTA_B0756 819195 - 818884 - | hypothetical protein TERM 611 819258 - 819241 - R 83 -6.9 -4.82901 | opp_overlap 819252 819256, overlap 819243 819256 GCTGCGTCAGAAAAA GGGTGCG GCAG CGAACCC GCCGATCGGGTCCCT RALTA_B0757 819575 - 819378 - | hypothetical protein TERM 612 819733 - 819699 - R 74 -12.9 -3.33815 | overlap 819700 ATCCGGCGCAATGAA CTGTTGCG-GCCCGCCG TAT CGGCGGGCACGCAAG-G CAATAGTGGTGGCCG RALTA_B0758 820052 - 819783 - | hypothetical protein RALTA_B0759 820345 - 820049 - | hypothetical protein encAB 820369 - 820512 + | bacteriolytic lipoprotein entericidin AB TERM 613 820534 - 820513 - T 71 -11.5 -3.43261 | overlap 820517 AAGCAGAAAATGTAA GCCACTGGC GGCC GCCGGTGGC CAGTGGACGGCCCGT TERM 614 820542 - 820566 + T 100 -20.7 -4.45945 | CCGGTGGCCAGTGGA CGGCCCGTGCC CCA GGCGCGGGCCG TTTTCGTTCATGCGT RALTA_B0761 821560 - 820574 - | putative transcriptional regulator, AraC family TERM 615 822762 - 822781 + G 74 -11.4 -3.74693 | gap 1 TGGAGCGGCGCTTCC GCGACGCGC AGG GCGCG-CGC TTTCATCCGCTGCAG RALTA_B0762 821708 - 822886 + | putative acyl-CoA dehydrogenase RALTA_B0763 822883 - 823467 + | putative flavin:NAD reductase RALTA_B0764 824333 - 823464 - | putative membrane protein; putative DMT domain glxR 825274 - 824366 - | 2-hydroxy-3-oxopropionate reductase (Tartronate semialdehyde reductase) (TSAR) RALTA_B0766 826451 - 825348 - | putative deshydrogenase, putative malate deshydrogenase TERM 616 826517 - 826490 - R 100 -17.8 -4.72272 | gap 1, opp_overlap 826490 GCTGCGGAGCAAAAA GCCCCGT-GCCGT GTG ACGGCAACGGGGC TTTCATGATACGTCC TERM 617 826490 - 826517 + r 100 -17.8 -3.79747 | gap 1, opp_overlap 826490 GCTGCGGAGCAAAAA GCCCCGT-GCCGT GTG ACGGCAACGGGGC TTTCATGATACGTCC RALTA_B0767 826843 - 826577 - | hypothetical protein RALTA_B0768 827720 - 826965 - | putative Transcriptional regulator, GntR family RALTA_B0770 827890 - 829110 + | Serine--glyoxylate aminotransferase TERM 618 829134 - 829166 + F 74 -9.8 -3.72576 | gap 1, opp_overlap 829116, overlap 829112 GATCGGGCCGCGCAG GTCAGGCAGGCGCGC CTCG GTCCGCC-GCCTGGC TTTCCTGCCGGAGCA RALTA_B0771 829256 - 832300 + | putative D-lactate dehydrogenase (Cytochrome); contains GlcD, FAD/FMN-containing dehydrogenases; GlpC, Fe-S oxidoreductase RALTA_B0772 832305 - 833459 + | Alanine racemase TERM 619 833510 - 833496 - f 88 -8.5 -4.70453 | AACGAAGAGAGAAAA GCCGC AACAA GCGGC ACCGGGTAGTCAAAG TERM 620 833603 - 833567 - g 72 -13.7 -3.1676 | gap 1, overlap 833565 ACACAGTCAGGAAGA CCCTGGC-GGCCGTGG TGGGTG CCACGGCCTGCCTGAG CGCATGGGCATGGGA RALTA_B0773 833542 - 834537 + | conserved hypothetical protein; putative exported protein; UPF0065 TERM 621 834582 - 834558 - f 76 -13.6 -3.2327 | gap 1, overlap 834559 GCAACGGATCACCAA CGGGCTGCGCC GCGC GGCGCAGC-CG ATGGCCTGAAGCAAG TERM 622 834582 - 834559 - f 71 -13.8 -2.53641 | overlap 834558 CAACGGATCACCAAC GGGCTGCGCC GCGC GGCGCAGCCG ATGGCCTGAAGCAAG RALTA_B0774 834610 - 835116 + | hypothetical protein RALTA_B0775 835129 - 836625 + | conserved hypothetical protein; putative membrane protein; integral membrane protein DUF112 RALTA_B0776 836808 - 837071 + | hypothetical protein RALTA_B0777 837100 - 837300 + | hypothetical protein TERM 623 838385 - 838402 + G 75 -9.9 -4.0098 | TCCTGGCATCGCGCC TGGGATC AAGT GATCCCA TTCTTTACGTTCCCG ISRta2 837395 - 838654 + | transposase, IS256 family TERM 624 838664 - 838690 + F 75 -11.6 -3.65902 | CGCTGAGATAATGCT GGCTCACCGT CGAATTA GCGGTGAGCC TTTACCTGCCCTGCA RALTA_B0779 838778 - 838975 + | hypothetical protein RALTA_B0780 838927 - 839160 + | hypothetical protein TERM 625 839178 - 839150 - T 72 -12.4 -3.27298 | opp_overlap 839150 839172 839172 CGCTGGAACCACCAA CGCCGCCTTAGC CAGCC GCTTAGGCGACG CGCTCTTTGCCTCCT RALTA_B0781 840350 - 839295 - | hypothetical protein TERM 626 841543 - 841513 - g 72 -8.2 -4.09685 | gap 1 GGTCACCGCGGAAAA GCACCTCGCGCGC CTGAAT GCGCGCC-GGCGC GAGACCTGCCCCGCG garD 840725 - 842290 + | (D)-galactarate dehydrogenase RALTA_B0783 842533 - 842309 - | hypothetical protein RALTA_B0784 843527 - 842592 - | putative transcriptional regulator, LysR family RALTA_B0785 843614 - 844822 + | putative formyl-CoA transferase, NAD(P)-binding; caiB/baiF CoA-transferase family. RALTA_B0786 844815 - 845954 + | ACYL COA DEHYDROGENASE OXIDOREDUCTASE PROTEIN; putative Butyryl-CoA dehydrogenase RALTA_B0787 846671 - 845982 - | conserved hypothetical protein; ProQ family (activator of osmoprotectant transporter ProP) TERM 627 846107 - 846132 + g 72 -13.9 -3.20723 | CAGCCTTGGCCTTCT GGCGTGCGGCG CCGG CGCGGCGCGCC TTCAGTTGCTGGGCG RALTA_B0788 847066 - 846839 - | hypothetical protein RALTA_B0789 847510 - 847241 - | hypothetical protein RALTA_B0790 847822 - 848433 + | putative resolvase RALTA_B0791 848566 - 849516 + | chemotaxis protein-glutamate methylesterase TERM 628 851108 - 851128 + G 72 -3.9 -4.54727 | overlap 851101 851100 CCGGTCTCGGTGCTG CCTGCGC CAGGCAA GCGCAAG TTTTCCTTTGGCGAC RALTA_B0792 849557 - 853678 + | Putative chemotaxis methyltransferase protein; contains Methylesterase domain (CheB), Methylase of chemotaxis methyl-accepting proteins domain (CheR), signal transduction histidine domain (NitrB), signal receiver (Rec) domain TERM 629 853720 - 853664 - T 86 -16.6 -3.1876 | gap 2 AACGCCATCGATGAA CTGCGCGCCAGC-T-AGCGCGCTGCCTG ACG CAGGAAGCGCCCCGATGCCGGGGCGCAG CACACGAGGGAGGGC tauC 854640 - 853765 - | taurine transport protein, ABC superfamily, membrane component tauB1 855427 - 854651 - | taurine transport protein, ABC superfamily, atp_binding component TERM 630 855487 - 855471 - R 75 -3.5 -4.83169 | overlap 855472 ACCGCCGCACAAAAA GGGGCGC GCG GCGGCCA GCTTCAGCGACAGGC tauA1 856518 - 855511 - | taurine transport protein, ABC superfamily, peri_binding component ssuA3 857748 - 856768 - | alkanesulfonate transport protein, ABC superfamily, peri_binding component RALTA_B0797 859298 - 857889 - | hypothetical protein TERM 631 858711 - 858691 - G 72 -4.6 -4.40358 | overlap 858702 AGCGACTGGACAAAA CCGGTGCA AAGCG CGCAGCGG CATTCGAGCCGGCCG TERM 632 859420 - 859382 - R 76 -13.8 -3.18274 | gap 1, opp_overlap 859403 CTCAGGCCAAGGCAA TGCGCGGGAG-GCGCCG GCCGTG CGGCGCGCTCCCCCGCT TGGGGGACTTGCCCC TERM 633 859403 - 859435 + r 70 -7.6 -4.10566 | gap 1, opp_overlap 859382 GGAGGCGCCGGCCGT GCGGCGCGCTCCCCC GCTT GGGGGA-CTTGCCCC TTCTTGTTGTTCAGT TERM 634 859450 - 859470 + r 77 -2.5 -5.00616 | overlap 859452 CTTCTTGTTGTTCAG TTCGTGC AAATGCC GCGCGGA TTTTTTGCCGCCGCA TERM 635 859664 - 859688 + r 85 -14.9 -3.61398 | CGCAGGCTGGGGCGG GGCCGCGGTGG CCG CCGCCGCGGGC TTCTTGCCGCCGCCG RALTA_B0798 860206 - 859640 - | conserved hypothetical protein; putative exported protein TERM 636 860019 - 860040 + g 82 -5.7 -4.71382 | TCCACCGTATCGCCG CCGGCCCAT TCGG AGGTGCCGG TTTTTGCATGGTTCT RALTA_B0799 860374 - 861618 + | putative Formyl-CoA transferase; caiB/baiF CoA-transferase family RALTA_B0800 861611 - 862378 + | putative Enoyl-CoA hydratase/isomerase RALTA_B0801 862395 - 864185 + | conserved hypothetical protein; DUF1446 RALTA_B0802 864182 - 865009 + | putative Transcriptional regulator, GntR family TERM 637 865432 - 865380 - g 78 -9.7 -4.2349 | gap 1, overlap 865381 GCCGTACAGCGAAAA CCCCGAGGCAGCCTGGGT-GGCCG ATGGCG CGGACGACCCACGCTGCCACGCGC ACGCGGACACCGAGA TERM 638 865431 - 865381 - g 72 -13.2 -3.13773 | gap 1, overlap 865380 CCGTACAGCGAAAAC CCCGAGGCAGCCTGGGT-GGCCG ATGGCG CGGACGACCCACGCTGCCACGCG CACGCGGACACCGAG RALTA_B0803 865024 - 865785 + | hypothetical protein RALTA_B0804 865860 - 866837 + | conserved hypothetical protein; putative exported protein; UPF0065 RALTA_B0805 868104 - 866872 - | putative transporter, MFS family TERM 639 867004 - 866955 - G 73 -10.5 -3.95584 | overlap 866956 CGCCCAGCAAGCAAA CGCCGCGCCAGCCGGCAGCGTCA TAGG TGACGGTGGTGGCCAGCGCGCCC AGGCCGCTGCCGGTC TERM 640 868558 - 868518 - g 77 -17.6 -2.62616 | gap 1, opp_overlap 868491 CCAGTGGGGAGAGCA CCACCTGTTCGCGCGCGGC GAGC GCCGCTCGC-AACTGGTGG AAAAGCGCACCGGCA TERM 641 868585 - 868563 - g 79 -11.3 -4.09739 | gap 1, opp_overlap 868577 GCAACTGGTGGAAAA GC-GCACCGG CAAG CCGGTGCCGC CGATGATGCCGCGCG RALTA_B0806 868210 - 868656 + | putative transcriptional regulator; HxlR family TERM 642 868847 - 868808 - f 81 -4 -5.06816 | overlap 868814 868815 AGCGGGCAATAAAAA CCAGAAGGCTCGCCCGCG TCAA CGCGTGCGAGCGCAGCGA CGCACTCCGTGCCAG TERM 643 868841 - 868814 - f 81 -12.6 -3.81195 | overlap 868808 868815 CAATAAAAACCAGAA GGCTCGCCCGCG TCAA CGCGTGCGAGCG CAGCGACGCACTCCG TERM 644 868840 - 868815 - f 83 -16.1 -2.8709 | overlap 868814 868808 AATAAAAACCAGAAG GCTCGCCCGCG TCAA CGCGTGCGAGC GCAGCGACGCACTCC RALTA_B0807 868833 - 869066 + | hypothetical protein RALTA_B0808 869006 - 869203 + | hypothetical protein ISRta4.2 869283 - 870308 + | transposase IS110 family RALTA_B0810 870987 - 870652 - | putative Transthyretin-like protein TERM 645 870829 - 870862 + g 70 -14.5 -2.78216 | opp_overlap 870797, overlap 870826 GGTGCGCGCCTGCGC CGGCGGCAGCATCGG CGCG TCGGTGCGGCCGTCG TGGTTGGTGCGGGTG RALTA_B0811 871527 - 871018 - | putative Transthyretin-like protein RALTA_B0812 872878 - 871529 - | putative transporter, Major facilitator superfamily MFS_1 RALTA_B0813 873272 - 874216 + | putative TRANSCRIPTION REGULATOR, LysR family RALTA_B0814 874342 - 874860 + | hypothetical protein RALTA_B0815 875535 - 874870 - | putative transporter RALTA_B0816 876938 - 875532 - | conserved hypothetical protein; Selenium-binding protein(56 kDa acetaminophen-binding protein) TERM 646 877071 - 877055 - H 73 -10.8 -3.65351 | opp_overlap 877056 GCATGCCGAGTCAAA GCCGCG CGTGC CGCGGC GCATGCGGTGGATTC TERM 647 877504 - 877528 + G 75 -8.5 -4.17048 | GACAGCGAAAGGCAT GGTTGATCGCC GCG GGCGTTCGATC TTCTTTTCGCGCGCC RALTA_B0817 877205 - 877609 + | conserved hypothetical protein; Thioesterase/thiol ester dehydrase-isomerase family RALTA_B0818 878615 - 877620 - | putative transcriptional regulator, AraC family qor3 878777 - 879757 + | quinone oxidoreductase, NADPH-dependent TERM 648 879799 - 879853 + G 78 -13.5 -3.54424 | gap 2, opp_overlap 879789 879813 ACTTACCTGCAGCAT CGGCGCCG-AAC-TGAGCGGCGTCAGC CTG GCCGATGCCGCGCGCGATGCGGCGCTG TTTGCCGAGATCAGG TERM 649 880134 - 880115 - g 74 -15 -3.05384 | CTGCGTTGCATCGAA TCGCCGCC CGTC GGCGGCGA CACCATCTGGGTCAA tauD1 879770 - 880612 + | Alpha-ketoglutarate-dependent taurine dioxygenase, 2-aminoethanesulfonate dioxygenase RALTA_B0821 880665 - 881723 + | hypothetical protein RALTA_B0822 881821 - 882819 + | conserved hypothetical protein; UPF0065; putative exported protein RALTA_B0823 883763 - 882831 - | putative transcriptional activator, LysR family RALTA_B0824 883934 - 885253 + | putative PERMEASE TRANSMEMBRANE PROTEIN; Major facilitator superfamily MFS_1 TERM 650 885234 - 885261 + F 80 -5.4 -4.86731 | overlap 885221 885220 TGCCGGCGCCGCAGG GCGCGGTGTCGG CGGC CTGACGCCGGAC TTTTGTTTCACGGAG RALTA_B0825 885284 - 886780 + | hypothetical protein RALTA_B0826 887431 - 886814 - | putative membrane transport protein; LysE type translocator RALTA_B0827 888146 - 887523 - | Putative transcriptional regulator; repressor, probable FMN-binding protein RALTA_B0828 888229 - 889707 + | putative TRANSCRIPTIONAl REGULATOR ; GntR family; aminotransferase domain RALTA_B0829 889962 - 890873 + | conserved hypothetical protein; UPF0065 TERM 651 891187 - 891158 - g 79 -18.6 -2.52543 | ACCGCGCCGAACGCA CGCGCGCCTGGC ACTTCA ACCAGGCGCGCG CGCACTGGCTGCTGA TERM 652 891207 - 891234 + G 82 -4 -4.9792 | CTGGCTGCTGACCTA CATGCGGCGCTG GCTC TGGTGCGGCGTG TTTTTCTATGGGCTG TERM 653 891278 - 891294 + G 77 -11.5 -3.92996 | AACTGATGTTGTCCG CGCCGGC GCT GTCGGCG TTCTTCTATGTGCCG RALTA_B0830 890974 - 891387 + | hypothetical protein aadA 891390 - 892184 + | Streptomycin 3''-adenylyltransferase RALTA_B0832 892405 - 893001 + | conserved hypothetical protein; putative exported protein RALTA_B0833 894081 - 893011 - | conserved hypothetical protein, Von Willebrand factor type A domain (vwa), putative exported protein TERM 654 893310 - 893366 + g 74 -12.4 -3.57144 | gap 4, opp_overlap 893307, overlap 893313 CCACGGTATAGATGC GCA-CGCCGTGCTCGGCGGCAAGTTGCG CCGCC CGCAGC--GCGGCCGGGC-CGGCGTTGC TTTCGCCATCGGAAA TERM 655 893313 - 893362 + g 73 -12.9 -3.52204 | gap 3, opp_overlap 893307, overlap 893310 CGGTATAGATGCGCA CGCCGTGCTCGGCGGCAAGTTGCG CCGCC CGCAGC--GCGGCCGGGC-CGGCG TTGCTTTCGCCATCG TERM 656 893914 - 893877 - G 88 -11.1 -4.44797 | gap 1, opp_overlap 893883, overlap 893879 CCAGCAAGATCAAAA CGGGCGCGACG-TGGCGG CGC CAGCCGGCGCCGCGCCTG GTGGCAACGCCCGCC RALTA_B0834 895124 - 894078 - | hypothetical protein RALTA_B0835 896115 - 895102 - | putative AAA_ATPase; moxR family RALTA_B0836 897038 - 896127 - | putative trypsin-like serine protease; putative exported protein TERM 657 896488 - 896513 + g 73 -10.5 -3.86897 | gap 1 AGGTCGTCAGGGATG GACTTGGCC-TG GAT CACGGCCAGGTC TTTCTCGGGGATCGC TERM 658 897600 - 897640 + G 82 -14.8 -3.53012 | gap 2, overlap 897604 AGCTGCAGCGCGGCA CGGCCACCGGCAGCGGCCTG TTC CAGGC-GCTGGCGGT-GCTG TTTCCCGAAGACGGC TERM 659 897604 - 897637 + G 77 -17.5 -2.60496 | gap 1, overlap 897600 GCAGCGCGGCACGGC CACCGGCAGCGGCCTG TTC CAGGC-GCTGGCGGTG CTGTTTCCCGAAGAC RALTA_B0837 897113 - 898174 + | conserved hypothetical protein, Von Willebrand factor type A domain (vwa), putative membrane protein RALTA_B0838 899214 - 898246 - | conserved hypothetical protein, UPF0065 RALTA_B0839 899495 - 899776 + | putative hydrolase; D-galactarate dehydratase/Altronate hydrolase, N-terminal motif RALTA_B0840 899854 - 901029 + | D-galactarate dehydratase / Altronate hydrolase TERM 660 901736 - 901703 - g 77 -14.5 -3.14132 | overlap 901726 CCTGGCGGCGATGAA GTCGGGCGCGGTGCT GGTC AACACCGCGCGCGGC GGCGTGGTGGATGAA serA2 901029 - 901964 + | D-3-phosphoglycerate dehydrogenase, NAD-binding RALTA_B0842 901961 - 902983 + | malate/L-sulfolactate dehydrogenase RALTA_B0843 903098 - 904063 + | conserved hypothetical protein; UPF0065; putative exported protein RALTA_B0844 904188 - 904928 + | putative TRANSCRIPTIONal REGULATOR, GntR family RALTA_B0845 905837 - 904980 - | putative esterase/lipase TERM 661 905999 - 905989 - H 74 -4.6 -4.57569 | CCATGTTCGGAAAAA GCGA AAA CCGC GATGACTACCAGGCG RALTA_B0846 906036 - 906761 + | putative TRANSCRIPTION REGULATOR PROTEIN; AraC family TERM 662 906847 - 906885 + F 71 -8.9 -3.87815 | gap 2, opp_overlap 906820, overlap 906871 GCGGCACAGTCTAGG TGCCGCCGGATGGCCAGCA CCG TGCTTGC--TCCGTCGGCA TTTGTCCAAGTCGAG RALTA_B0847 906918 - 907373 + | conserved hypothetical protein; Endoribonuclease L-PSP domain, may be involved in the regulation of purine biosynthesis purAlike 907377 - 908756 + | Adenylosuccinate synthase; similar to purA RALTA_B0849 908753 - 909379 + | conserved hypothetical protein; putative flavin-nucleotide-binding domain TERM 663 909403 - 909420 + F 100 -11.3 -5.67063 | opp_overlap 909403 ATCGCATGACATGAA GAGGTGC TTCG GCACCTC TTTTTTTGTGCTCGG RALTA_B0850 909606 - 910979 + | putative General substrate transporter; Major facilitator superfamily MFS_1 ohrAB 911524 - 911024 - | Organic hydroperoxide resistance protein ohrAB (General stress protein 17o) (Gsp17o); osmC family TERM 664 911499 - 911513 + g 77 -11.4 -3.9392 | AGCAGGCTCAGCGGA GGGGCT TGC AGCCCC TTGTTTGCCATGGGC RALTA_B0852 912301 - 911540 - | conserved hypothetical protein; UDP-glucose 4-epimerase domain RALTA_B0853 913472 - 912444 - | putative transcriptional regulator, AraC family RALTA_B0854 913497 - 913688 + | hypothetical protein RALTA_B0855 913835 - 914869 + | putative transcription regulator, LysR family RALTA_B0856 916898 - 914904 - | putative Hydro-Lyase; similar to 3-isopropylmalate dehydratase and Aconitase TERM 665 916243 - 916214 - G 79 -2 -4.82901 | gap 2, overlap 916215 CGGCCCGCACAAAAA TGCC-G-TCGCCCG CGAC CGGGCGCTCCGGCG TCACCGGCGTTGCGA TERM 666 916778 - 916811 + g 70 -12.4 -3.34043 | gap 1, opp_overlap 916760 CGTCGCGCAGCGCGC CGGCGGTGGCCAGCG TCATC CGCTGGCC-CTGCAG TTGTGCCGTCATGGC RALTA_B0857 917076 - 917987 + | putative TRANSCRIPTIONAL REGULATOR,LysR family RALTA_B0858 918165 - 919091 + | conserved hypothetical protein; UPF0065 RALTA_B0859 920072 - 919137 - | putative transcriptional regulator, LysR family TERM 667 923219 - 923162 - g 77 -17.8 -2.66216 | gap 3, overlap 923161 GCCGATTACCAGAAC GCCGCCTACGCGGCGC-GCTAC-CGCGAC GCC GTCGCGCGCATCCGCGCCGCGGA-GCAGC AGCTGGGCATCGACC iorAB 920204 - 923773 + | Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits; PorG domain, C terminal (Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, gamma subunit) RALTA_B0861 924885 - 923923 - | NADPH:quinone reductase; Zinc-containing alcohol dehydrogenase superfamily RALTA_B0862 925790 - 924912 - | putative oxidoreductase; similar to short-chain dehydrogenase/reductase SDR RALTA_B0863 926395 - 925787 - | hypothetical protein RALTA_B0864 926756 - 926436 - | hypothetical protein TERM 668 927241 - 927286 + G 74 -13.2 -3.3879 | overlap 927239 TGCGCGATGCTGTAT CCG-CGCGCCGGCGCGCTCAGC CTGG GC-GAACGCGCGGGCGAGGCGG TCTTTCGGATGGATT RALTA_B0865 926938 - 927951 + | putative transcriptional regulator; AraC family TERM 669 928429 - 928455 + G 81 -12.3 -3.86897 | opp_overlap 928397 GCCGACCGCGACAGC GGCGTGCTGCA TCCGC TGCAGCAGGCC TTTATCGACCATGAC yagT2 928126 - 928668 + | xanthine dehydrogenase yagT iron-sulfur binding subunit, putative oxidoreductase, 2Fe-2S subunit TERM 670 929136 - 929093 - g 93 -17.3 -3.61398 | opp_overlap 929112 CGTGCCCTGCAACAA GCGCGAGCCCGGCAGCGGC TGCCCG GCGGCGACCGGGCTGGCGC GCCAGCATGCCATCC yagS2 928665 - 929765 + | yagS; molybdopterin dehydrogenase, FAD-binding, CO dehydrogenase flavoprotein, C-terminal yagR2 929762 - 932041 + | Xanthine dehydrogenase aldehyde oxidase, molybdenum binding subunit RALTA_B0869 932968 - 932060 - | putative permease of the drug/metabolite transporter (DMT) superfamily RALTA_B0870 934364 - 933045 - | putative regulator; hipA-like domains RALTA_B0871 934648 - 934361 - | putative transcription regulator; HTH isolated domain TERM 671 934493 - 934528 + g 83 -19.8 -2.76696 | gap 1, overlap 934493 934495 934497 934519 CTGCGCGTCCAGGGC GGCGGCCAGCGCCTCCA GAG TGGAGGCGC-GGCTGTC CTTCTTGCCGAGCAG TERM 672 934493 - 934529 + g 93 -17.4 -3.61398 | overlap 934493 934495 934497 934519 CTGCGCGTCCAGGGC GG-CGGCCAGCGCCTCCA GAG TGGAGGCGC-GGCTGTCC TTCTTGCCGAGCAGG TERM 673 934495 - 934526 + g 82 -18.8 -2.93073 | gap 1, overlap 934493 934493 934497 934519 GCGCGTCCAGGGCGG CGGCCAGCGCCTCCA GAG TGGAGGCGC-GGCTG TCCTTCTTGCCGAGC TERM 674 934497 - 934524 + g 82 -17.8 -3.01745 | gap 1, overlap 934495 934493 934493 934519 GCGTCCAGGGCGGCG GCCAGCGCCTCCA GAG TGGAGGCGC-GGC TGTCCTTCTTGCCGA imuA 934950 - 935867 + | required for the error-prone processing of DNA lesions along with dnaE2 and imuB TERM 675 936263 - 936317 + GF 100 -24.4 -2.78384 | gap 3 TGGGCTGCGGCCCGA CCGCGC-ACG-GCGCCGC-GTGGCTGG CGCG CCAGCCGCTGCGGCGCACGCGGCGCGG TGTGGTGCGGCCCGG TERM 676 936355 - 936393 + GF 84 -16.6 -3.06796 | GCGGTGGGCATGGCG CGCCTGCACCGGCTGCTG GAC CGCCTGCCGGTGGAGGCG TTGCATACGCTGGCC TERM 677 936535 - 936546 + GF 73 -7.2 -4.14541 | overlap 936509 CAGGCCTATGGCGAG GCGC CGGC GCGC TTTATCTGGTTCGTG imuB 935818 - 937362 + | required for the error-prone processing of DNA lesions along with dnaE2 and imuA TERM 678 938839 - 938808 - g 79 -10.8 -3.98661 | gap 1, overlap 938810 938811 TACATCTACGACAAA TACGGCCGCCATCGC GCC GCGCTGGCGG-CGTC GCTGATCACCTACCG TERM 679 938837 - 938810 - g 78 -13.4 -3.5812 | gap 1, overlap 938808 938811 CATCTACGACAAATA CGGCCGCCATCGC GCC GCGCTGGCGG-CG TCGCTGATCACCTAC dnaE2 937419 - 940784 + | DNA polymerase III, alpha subunit TERM 680 940854 - 940803 - f 75 -14.5 -2.71364 | gap 1, opp_overlap 940810 940815, overlap 940815 GCACGTCGCCAATGA GC-GAGATGCAAACGACGCGAGAC TAGTT GGCTCGCGCCGTTTGCTTTTCAGC GCTGCTCATCCGTCG TERM 681 940810 - 940846 + F 100 -16.6 -4.10161 | opp_overlap 940803 940815, overlap 940815 GCCAATGAGCGAGAT GCAAACGACGCGAGAC TAGTT GGCTCGCGCCGTTTGC TTTTCAGCGCTGCTC TERM 682 940815 - 940841 + F 79 -9.3 -4.19735 | opp_overlap 940815 940803, overlap 940810 TGAGCGAGATGCAAA CGACGCGAGAC TAGTT GGCTCGCGCCG TTTGCTTTTCAGCGC TERM 683 940841 - 940815 - f 76 -11.5 -3.71873 | opp_overlap 940810 940815, overlap 940803 TGAGCGAGATGCAAA CGACGCGAGAC TAGTT GGCTCGCGCCG TTTGCTTTTCAGCGC TERM 684 940987 - 941022 + F 100 -24.8 -2.78463 | opp_overlap 940998 GGGCGTTCGATGGCG CGACGGACAGAGCCGC TCGC GCGGCGCTGTCCGTCG TGTGGTACGCAGGCT RALTA_B0875 941445 - 942092 + | hypothetical protein; putative exported protein RALTA_B0876 942313 - 942071 - | hypothetical protein TERM 685 942381 - 942333 - R 73 -10.7 -3.66178 | opp_overlap 942333 942337, overlap 942316 942334 CCGCGGAACTGGAAA GCGCTCAGCCATTGCCGGCCACG CCG CGCCGCCGGCCGTGGCGCAGCGG CTGATTCTTGACACG TERM 686 942380 - 942334 - R 75 -14.2 -2.79492 | opp_overlap 942333 942337, overlap 942316 942333 CGCGGAACTGGAAAG CGCTCAGCCATTGCCGGCCACG CCG CGCCGCCGGCCGTGGCGCAGCG GCTGATTCTTGACAC RALTA_B0877 943562 - 942426 - | putative NADH oxidoreductase; partial N-terminal NADPH:quinone reductase and related Zn-dependent oxidoreductases domain TERM 687 943889 - 943832 - H 81 -12.5 -3.77196 | gap 1, opp_overlap 943877 CCACCACGGACGAAA CAGGGCGCTGCGCCCGGCCCGCGCCA CCTACAT CGGCACGGCCTGCGCGG-GCGCCCCG CCAGCCTCACCGGGC TERM 688 944673 - 944698 + G 70 -12.5 -3.29511 | overlap 944679 TCAACTTCCCGAATG CGCCGACGGCG GCCA CGCCGTTTGCG TTCTCGCGGCATGGC TERM 689 944679 - 944692 + G 71 -9.5 -3.80625 | overlap 944673 TCCCGAATGCGCCGA CGGCG GCCA CGCCG TTTGCGTTCTCGCGG TERM 690 944849 - 944838 - g 70 -3.6 -4.46656 | overlap 944830 944839 944840 TCTACAAGACCAAAA CGGC CGTT ACCG CCATGCAGATCGGCT RALTA_B0878 943976 - 944929 + | putative Acid phosphatase, 5'-nucleotidase RALTA_B0879 944977 - 945594 + | hypothetical protein RALTA_B0880 946066 - 945629 - | hypothetical protein TERM 691 946007 - 946025 + g 73 -8 -4.18018 | opp_overlap 946006 AGGCCGGGTACGAAT CCCCGGCG CCT CGCTGGCG TTTTCACTGGCGGAG RALTA_B0881 946513 - 947442 + | conserved hypothetical protein; UPF0065 atoD2 947507 - 948169 + | acetyl-CoA:acetoacetyl-CoA transferase, alpha subunit atoA2 948225 - 948851 + | acetyl-CoA:acetoacetyl-CoA transferase, beta subunit RALTA_B0884 948943 - 949383 + | putative transcriptional regulator, AraC family, isolated domain RALTA_B0885 949458 - 949868 + | putative lyase RALTA_B0886 950925 - 949933 - | conserved hypothetical protein; UPF0065 domain; putative exported protein ttuE1 952520 - 951102 - | PYRUVATE KINASE; tartrate degradation ttuD2 953804 - 952533 - | HYDROXYPYRUVATE REDUCTASE OXIDOREDUCTASE PROTEIN; tartrate degradation TERM 692 952822 - 952852 + g 73 -12.7 -3.53012 | gap 2 TCCACGTTGCGGCCG CCA-CGTC-CCGTGC CCC GCACGGTGACGGTGG TTTCGCCGCCCGACA TERM 693 953925 - 953872 - R 75 -14.3 -2.70932 | gap 1, opp_overlap 953919 953920 CCGCTGTGCGAACCA TGCAGCGGCGCGCGCCCGCACGCGGC CCG GCCGGGACCGGG-GCGCGAAGCTGCC TCAGGCGGCCTTCTG ttuC1 955011 - 953926 - | tartrate dehydrogenase TERM 694 954928 - 954907 - G 78 -12.3 -3.76839 | gap 1, opp_overlap 954905 GAACTCGAAGCGAAA GCTGGC-GCC ATG GGCGGCCAGC GCTTCCATCACCTCG RALTA_B0890 955155 - 956078 + | TRANSCRIPTION REGULATOR, HTH lysR family; putative ttuA activator RALTA_B0891 956711 - 956148 - | hypothetical protein RALTA_B0893 957782 - 956985 - | putative Hydrolase, alpha/beta hydrolase fold family TERM 695 957140 - 957124 - G 71 -2.1 -4.56775 | overlap 957126 957127 AGTTCCTCGGAAAAA TACGGCG GCG CGCAGAA GTCGCGTTCGCCCAC RALTA_B0894 958350 - 957976 - | putative Glyoxalase/dioxygenase RALTA_B0895 958722 - 958360 - | hypothetical protein aleB 958824 - 961049 + | TonB-dependent siderophore receptor RALTA_B0898 962110 - 961097 - | conserved hypothetical protein; UPF0065 domain; putative exported protein RALTA_B0899 963157 - 962285 - | putative outer membrane lytic transglycosylase MltA-interacting MipA TERM 696 962462 - 962519 + g 79 -14.8 -3.25823 | gap 2 CTTGATCCCGCCGCG CGCGTGGTACTGCGGCCGGTCGGCGCGC GCCT GCGCGGCG-CTGAC-GCCGTACCAGGCG TTCATGTAGCGCGAG yagR1 965459 - 963258 - | Aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding yagS1 966454 - 965456 - | xanthine dehydrogenase , with FAD-binding domain TERM 697 966117 - 966099 - G 72 -5.3 -4.40963 | gap 1, overlap 966100 966101 AGGTCGTAAAAATAA TGGCAGCG GGTG CGCTGC-A GCAGGTTGCCCCCCA yagT1 966969 - 966463 - | xanthine dehydrogenase, iron-sulfur binding subunit; putative oxidoreductase, 2Fe-2S subunit TERM 698 967248 - 967231 - R 100 -10.5 -5.38054 | CGCCACAAACAAAAA CGGCGCC CGAA AGCGCCG TCATGAGGCTGTGCC tyrB 968468 - 967272 - | tyrosine aminotransferase, tyrosine-repressible, PLP-dependent TERM 699 968493 - 968529 + r 82 -10.8 -4.07568 | overlap 968494 968496 TGGAGTTGGGTCGGG GGC-GGCTGCTGCGGCGC ATG GCGCCGC-GCAGCCTGGA TTTTAACCGGCGGCG TERM 700 968494 - 968528 + r 78 -14.3 -3.04398 | overlap 968493 968496 GGAGTTGGGTCGGGG GC-GGCTGCTGCGGCGC ATG GCGCCGC-GCAGCCTGG ATTTTAACCGGCGGC TERM 701 968496 - 968525 + r 100 -21.5 -2.74605 | gap 1, overlap 968494 968493 AGTTGGGTCGGGGGC GGCTGCTGCGGCGC ATG GCGCCGC-GCAGCC TGGATTTTAACCGGC TERM 702 968574 - 968624 + r 78 -11.8 -3.78934 | gap 2 GGCGCCGCCTGGCCG GGTCAGCGCAGCTGCTGCGCGGCC ACGCC GGCT-TGCAGC-GCGGCGCCGGCC TTCTTCTGGCGCACC aroP 969970 - 968576 - | aromatic amino acid transport protein (APC family) RALTA_B0905 971231 - 970152 - | 4-HYDROXYPHENYLPYRUVATE DIOXYGENASE OXIDOREDUCTASE PROTEIN RALTA_B0906 971505 - 971942 + | putative TRANSCRIPTIONAL REGULATOR ; AsnC/Lrp family RALTA_B0907 973902 - 971953 - | putative sensor hybrid histidine kinase RALTA_B0908 974381 - 975022 + | putative response regulator, LuxR family RALTA_B0909 975063 - 975797 + | hypothetical protein RALTA_B0910 975971 - 976456 + | conserved hypothetical protein; putative exported protein RALTA_B0911 977153 - 976542 - | Putative transcriptional regulator; TetR family RALTA_B0912 978169 - 977267 - | putative patatin-like phospholipase RALTA_B0914 979164 - 978433 - | conserved hypothetical protein; similar to hypothetical E.coli yceH RALTA_B0915 979369 - 981105 + | Thioredoxin-disulfide reductase ada 982201 - 981119 - | O6-methylguanine-DNA methyltransferase; transcriptional regulator of DNA repair (AraC/Xyl family) (N-terminal); bifunctional RALTA_B0917 982911 - 982210 - | hypothetical protein RALTA_B0918 983196 - 983675 + | hypothetical protein TERM 703 983718 - 983677 - T 74 -12.3 -3.53091 | overlap 983678 AGCTGGGGTTGTAAA GGGTCTTCCCTCTGTCCCG CGCG CGGGACAGAGGCAAAAACA AAGGGCCGGCTTACT TERM 704 983717 - 983678 - T 78 -15.8 -2.71712 | overlap 983677 GCTGGGGTTGTAAAG GGTCTTCCCTCTGTCCCG CGCG CGGGACAGAGGCAAAAAC AAAGGGCCGGCTTAC pepV 985534 - 983729 - | peptidase; putative AMINOACYL-HISTIDINE DIPEPTIDASE (CARNOSINASE) (XAA-HIS DIPEPTIDASE) PROTEIN; signal TERM 705 985380 - 985400 + g 71 -3.1 -4.61231 | opp_overlap 985331 GCCGAACTGCTGCCG GTAAGCGCT TCC AGCGCCGGC TTTTTCAGCGTCTGG prx5 985756 - 986487 + | peroxiredoxin/glutaredoxin, Thioredoxin reductase TERM 706 986548 - 986525 - f 78 -15.2 -2.71144 | opp_overlap 986541, overlap 986498 GATTGCCCCGAACCA CGGGGCCGGC AGTC GCCGGACCCG ATGGCGCCGCCTTGC TERM 707 986890 - 986937 + G 72 -4.7 -4.46212 | gap 1, overlap 986901 986903 TATCCGCATCGACGG CCG-CGAGGTGATGGCGCGCGT GCGCA GCGAGCGCGACCGCTTTGTCGG TTTTGTGGTGCGCGG pdhD2 986603 - 988045 + | Dihydrolipoyl dehydrogenase, Dihydrolipoamide dehydrogenase RALTA_B0922 988159 - 988707 + | putative transcriptional regulator, TetR family fhuA1 988873 - 991083 + | TonB-dependent siderophore receptor, HYDROXAMATE-TYPE FERRISIDEROPHORE RECEPTOR precursor RALTA_B0924 991790 - 991104 - | hypothetical protein TERM 708 991908 - 991890 - H 95 -10.2 -4.59109 | opp_overlap 991888 CAGAGGTGGCAAAAA CCGTCAGC CGC GCTGGCGG AATCGGTTATTGCCG RALTA_B0925 992021 - 993685 + | AMP-dependent Acetyl-CoA synthase ligase RALTA_B0926 993856 - 994587 + | conserved hypothetical protein; Putative phospholipid-binding domain; Transport-associated TERM 709 994607 - 994648 + T 71 -12.9 -3.08679 | opp_overlap 994602, overlap 994609 GGGCAAGCGAGTGGT TATCGCTGCTCGCCGCGCT GCGC GGCGCGCCTTGCAGCGGTA TCTTCCATGCGCCAG RALTA_B0927 995709 - 994606 - | putative transcriptional regulator, AraC family TERM 710 994928 - 994886 - G 78 -13.5 -3.54459 | opp_overlap 994889 GTAACCTGGCGGAAA TGACGCA-GCAGCGTGCGTTC GCT GACCGC-CGCCGCCTGCGCCA CCGCGGCCAGCCGGT TERM 711 995178 - 995167 - G 72 -5.8 -4.2828 | overlap 995169 CGCCACGCACGAAAA CACG TGGC CGTG CACGCTCATGGCCGC TERM 712 996764 - 996739 - g 71 -11.1 -3.56821 | gap 1 ACCAGATCCCGGAAA GCGC-CGTGGCC TAC GGCGACGTGCGC ACCACGGCCGCGGGT cgp2 995892 - 997151 + | CARBOXYPEPTIDASE G2 PRECURSOR (FOLATE HYDROLASE G2) metallopeptidase TERM 713 997409 - 997384 - g 78 -6.7 -4.56597 | opp_overlap 997407, overlap 997386 GCCGCGCTGGAAAAA CTCCATGCCGA TTTC CCGGCCTGGCG CGACGTCGGCGATGC RALTA_B0929 997276 - 997539 + | hypothetical protein RALTA_B0930 999069 - 997552 - | putative phospholipase D, two active site motifs; similar to E.coli uncharacterized ymdC TERM 714 998094 - 998083 - G 90 -7.2 -5.0133 | CATGTCGGTAAAAAA GGCG GTGC CGCC GGTCGAGGGCACGAA TERM 715 999287 - 999249 - H 77 -14.4 -2.94747 | GCACTGCACCAGACA GGCCCCCGGCATGCGCCA TGA CGGCGCACCGCGCGGGCC GCCATGGGGCAAAAC TERM 716 999327 - 999302 - H 90 -13.9 -4.09685 | overlap 999303 CGCCATGGGGCAAAA CCGCCGCGGCC CCGC GGCCACGGCGC TGGCGCGGAACCTGC TERM 717 999326 - 999303 - H 88 -17.4 -3.05597 | overlap 999302 GCCATGGGGCAAAAC CGCCGCGGCC CCGC GGCCACGGCG CTGGCGCGGAACCTG RALTA_B0931 999561 - 1000559 + | putative oxygenase; Flavanone 3-dioxygenase / Isopenicillin-N synthase sodC 1001133 - 1000627 - | SUPEROXIDE DISMUTASE CU-ZN PRECURSOR PROTEIN TERM 718 1000656 - 1000685 + g 70 -12.1 -3.29273 | gap 1, opp_overlap 1000656, overlap 1000654 1000657 CCACGCCGCAGGCAA TGCGG-CCGCCGGC ATT GCCGGTGGGCTGCG TCTTGTAGTCGTCCG RALTA_B0934 1002277 - 1001342 - | putative transcriptional regulator, LysR family TERM 719 1002872 - 1002908 + G 70 -8.6 -3.85698 | gap 1, overlap 1002867 CATGGACAGCGCCGC GCTGCTGCCGTGGCTGG TGTA CCTGC-ACGCCGGCGGC TTTGTCGACGGCGGC RALTA_B0935 1002672 - 1003661 + | putative Acetyl-hydrolase TERM 720 1003843 - 1003833 - f 74 -4.6 -4.63218 | TCCGGTTGAAGAAAA CCCG ATC CAGG AGTTTGAGAAATGCA TERM 721 1004766 - 1004778 + G 72 -6.2 -4.25104 | opp_overlap 1004752, overlap 1004764 ATGGGCGGCGGCGCG CCGC ATGCG GCGG TTTTGGTCAACGACC RALTA_B0936 1003854 - 1005095 + | component of acridine efflux pump, similar to acrA TERM 722 1005624 - 1005600 - g 70 -12.8 -3.29144 | GCAGCTGGTGCAGAA CCGCGTCTCG CAGGC CGAGCCGCGG CTGCCGGAAGATGTG TERM 723 1005866 - 1005854 - g 84 -4.8 -5.055 | overlap 1005856 TCAACCCGGAAAAAA TGGC CGAGC GCCA GCTTGCCACCGGCGA TERM 724 1007818 - 1007772 - g 87 -18 -3.25823 | gap 1, opp_overlap 1007778 CGCCGCCGACATGAA CGGCGGGCCCGCGCCGGGC TTCTCGTCGG GCCAGGCGCAGGCC-GCCG CCGAGCGCATTGCCG RALTA_B0937 1005193 - 1008453 + | multidrug transport protein, acriflavin resistance protein F (RND family); similar to E.coli acrB TERM 725 1008812 - 1008779 - g 80 -16.7 -3.17194 | gap 1, overlap 1008781 AGGCGCGCAATGGAA GACCGCGACGCCGGCC GAG GGCCAGCACCGCGG-C GAATGGTGGAAGATC TERM 726 1008811 - 1008781 - g 90 -20.4 -3.14878 | overlap 1008779 GCGCGCAATGGAAGA CCGCGACGCCGGCC GAG GGCCAGCACCGCGG CGAATGGTGGAAGAT RALTA_B0938 1008615 - 1010138 + | RND efflux system, outer membrane lipoprotein, NodT related RALTA_B0939 1010281 - 1011366 + | conserved hypothetical protein, Phosphatidylethanolamine-binding protein family, UPF0098 RALTA_B0940 1011456 - 1011923 + | hypothetical protein RALTA_B0941 1013719 - 1011875 - | putative Endonuclease/exonuclease/phosphatase RALTA_B0942 1013850 - 1014140 + | hypothetical protein TERM 727 1014305 - 1014329 + G 75 -9.2 -4.19624 | gap 1, overlap 1014306 GGCGCATTTCTATAC CGCC-GCGGCG CTGG CGCCGCTGGCC TTTATCTTCGACGTG RALTA_B0943 1014198 - 1014788 + | putative Phosphatidylserine synthase, CDP-diacylglycerol--serine O-phosphatidyltransferase, putative membrane protein RALTA_B0944 1014883 - 1016121 + | prophage INTEGRASE PROTEIN RALTA_B0945 1016706 - 1016116 - | hypothetical protein RALTA_B0946 1017866 - 1017006 - | hypothetical protein TERM 728 1017879 - 1017899 + r 79 -11.2 -3.9461 | CAAACGATTAAGTTT TGGCTGAC TTGAT GTCAGCCA TTCTTCTTCGAAGCC RALTA_B0947 1018486 - 1017893 - | hypothetical protein TERM 729 1018711 - 1018685 - H 91 -5 -5.26875 | CTGTCAAGCAAAAAA CGGGGGAGTCTT AGA AGGATTCGCCCG ACCCGGCTCCCCAGC RALTA_B0949 1018888 - 1020057 + | hypothetical protein, putative exported protein RALTA_B0950 1020225 - 1020524 + | hypothetical protein; putative membrane protein TERM 730 1020545 - 1020530 - f 76 -10.4 -3.91911 | opp_overlap 1020530 1020528 CCGAGCTTAAGGAAA GGGGCT GTGC AGCCCC TCTTTCCGCAGTGCG TERM 731 1020634 - 1020652 + G 72 -13.2 -3.14944 | overlap 1020645 CAGGGATTCGATGTT CGCTTCCA TCA TGGAAGCG TTCCATCTGATGGTG RALTA_B0951 1020599 - 1020847 + | hypothetical protein RALTA_B0952 1021318 - 1020905 - | conserved hypothetical protein; putative exported protein TERM 732 1021316 - 1021303 - G 79 -2.3 -4.81551 | opp_overlap 1021313 CAGCTACAGCAAAAA GACCC AGAC GTGTC ATATCGACATCCTTA RALTA_B0953 1021590 - 1021348 - | hypothetical protein RALTA_B0954 1021705 - 1021526 - | hypothetical protein RALTA_B0955 1022024 - 1021710 - | hypothetical protein; putative exported protein RALTA_B0956 1022398 - 1022036 - | hypothetical protein; putative exported protein RALTA_B0957 1022613 - 1022440 - | hypothetical protein RALTA_B0958 1022924 - 1022637 - | hypothetical protein TERM 733 1023018 - 1023001 - R 100 -12.7 -5.79526 | AGACTCCAAAAAAAA CGCCCCT TGGA AGGGGCG CCAGGAGACATCACG RALTA_B0959 1023214 - 1023044 - | hypothetical protein; putative exported protein RALTA_B0960 1023558 - 1023289 - | hypothetical protein TERM 734 1023632 - 1023612 - R 100 -18.3 -5.27335 | GCGTCCAAACAAAAA CGCCGACCC AAT GGGTCGGCG TCAACGAGTGCTGAA RALTA_B0961 1024113 - 1023661 - | hypothetical protein RALTA_B0962 1024321 - 1024560 + | hypothetical protein RALTA_B0963 1024678 - 1024779 + | hypothetical protein TERM 735 1024826 - 1024858 + F 71 -8.3 -3.88291 | opp_overlap 1024832, overlap 1024829 GCTGATTTTCGGCGG GAGGAAGGGGCCGTG ATT CGCGTCGCCTTCGTC TTTCTGAACCTGCTG RALTA_B0964 1024838 - 1025038 + | hypothetical protein; putative exported protein TERM 736 1025111 - 1025143 + G 100 -3.9 -5.55698 | overlap 1025109 GGTGCCATGCTGGGT GCCGCGGTCGCACTC TCT GGCTGCGGCTCAGGC TTTTTTTGGCTTGTC RALTA_B0965 1025063 - 1025164 + | hypothetical protein RALTA_B0966 1025388 - 1025786 + | hypothetical protein RALTA_B0967 1025797 - 1026258 + | hypothetical protein RALTA_B0968 1026278 - 1026718 + | hypothetical protein RALTA_B0969 1026792 - 1027211 + | hypothetical protein RALTA_B0970 1027204 - 1027545 + | hypothetical protein RALTA_B0971 1027542 - 1027769 + | hypothetical protein RALTA_B0972 1027781 - 1028005 + | hypothetical protein RALTA_B0973 1028002 - 1028169 + | hypothetical protein RALTA_B0974 1028157 - 1028624 + | putative transcriptional regulator, C-terminal effector domain in the two-component response regulator activity RALTA_B0975 1028621 - 1029085 + | hypothetical protein RALTA_B0976 1029076 - 1029405 + | hypothetical protein RALTA_B0977 1029420 - 1029659 + | hypothetical protein RALTA_B0978 1029862 - 1030095 + | hypothetical protein TERM 737 1030134 - 1030109 - T 71 -13.3 -2.9914 | opp_overlap 1030114, overlap 1030114 GACGGGCCAGACACA GGAAAGGCGCC TTTC GGCGCCTTTCA AATCCTCCCAAGCCG TERM 738 1030114 - 1030129 + T 75 -11.8 -3.62096 | opp_overlap 1030114 1030109 GCCAGACACAGGAAA GGCGCC TTTC GGCGCC TTTCAAATCCTCCCA TERM 739 1030129 - 1030114 - T 81 -11.8 -3.91196 | opp_overlap 1030114, overlap 1030109 GCCAGACACAGGAAA GGCGCC TTTC GGCGCC TTTCAAATCCTCCCA RALTA_B0979 1030463 - 1030152 - | hypothetical protein RALTA_B0980 1030602 - 1030387 - | hypothetical protein RALTA_B0981 1030719 - 1031660 + | hypothetical protein TERM 740 1031703 - 1031723 + F 82 -14.7 -3.35679 | CCCCTTCACCGTCAA GCCGCTTGC GCT GCAGGCGGC TTCTCAGTGAAACCA RALTA_B0982 1031730 - 1032092 + | hypothetical protein RALTA_B0983 1032216 - 1032653 + | hypothetical protein RALTA_B0984 1033961 - 1032777 - | hypothetical protein TERM 741 1033933 - 1033906 - G 77 -11.2 -3.85539 | opp_overlap 1033902 CACATCGACAGGAAA CCCGGTGTCCGG AGGA CCGGATACCCGG CCACTTTGAGGTATG RALTA_B0985 1034293 - 1034511 + | hypothetical protein RALTA_B0986 1034544 - 1034735 + | hypothetical protein TERM 742 1034744 - 1034730 - f 70 -7.8 -4.00476 | overlap 1034720 GAAACCCAGGAGAAA GCCTGA TGC CCAGGC CAACACGAACGCACC RALTA_B0987 1034771 - 1034992 + | hypothetical protein RALTA_B0988 1034989 - 1035573 + | conserved hypothetical protein; putative phosphoesterase RALTA_B0989 1035611 - 1035850 + | hypothetical protein RALTA_B0990 1035847 - 1036518 + | hypothetical protein TERM 743 1036634 - 1036616 - g 75 -9.6 -4.03234 | CGGCCTCTACAGAAA GCAGCCAT GCG ATGACTGC CCCTGGCGGGTGGAT RALTA_B0991 1036515 - 1036943 + | hypothetical protein RALTA_B0992 1037035 - 1037424 + | hypothetical protein RALTA_B0993 1037529 - 1038107 + | hypothetical protein; putative exported protein RALTA_B0994 1038191 - 1038484 + | hypothetical protein RALTA_B0995 1038748 - 1039095 + | thiogalactoside acetyltransferase/ Maltose O-acetyltransferase TERM 744 1039199 - 1039152 - f 86 -7.2 -4.67982 | gap 2, opp_overlap 1039165, overlap 1039162 1039165 GCGGATTGAAGAAAA GCCGA-CAAA-ATAAGGCACCC GAATTT GGGTGCCTTTTGTTTGATCGGT AGCGGCCATGGAGTA TERM 745 1039187 - 1039162 - f 91 -9 -4.46581 | opp_overlap 1039165, overlap 1039152 1039165 GAAAAGCCGACAAAA TAAGGCACCC GAATTT GGGTGCCTTT TGTTTGATCGGTAGC TERM 746 1039165 - 1039184 + F 100 -11.4 -4.9448 | opp_overlap 1039162 1039152 1039165 AAGCCGACAAAATAA GGCACCCG AATT TGGGTGCC TTTTGTTTGATCGGT TERM 747 1039184 - 1039165 - f 89 -10.7 -4.32669 | opp_overlap 1039165, overlap 1039162 1039152 AAGCCGACAAAATAA GGCACCC GAATTT GGGTGCC TTTTGTTTGATCGGT RALTA_B0996 1039293 - 1039373 + | pseudogene; homolog to the end of p1RATA1978 RALTA_B0997 1040805 - 1039456 - | transporter, Major facilitator superfamily MFS_1 TERM 748 1040442 - 1040428 - G 73 -10 -3.89346 | GCCCCATGCCACAAA GAGCTG CCA CAGCTC GGTCGACACGGTGGC RALTA_B0998 1041464 - 1040871 - | putative transcriptional regulator, TetR family TERM 749 1041496 - 1041546 + H 70 -12.2 -3.17146 | opp_overlap 1041496, overlap 1041485 1041503 1041503 TGGGGCTTTCGCAAA GCTTAGATGATGTTCATCATTTAT TCA ATAGATGTTGAGCATCATTTAACC TATCTTGTCACAAGG TERM 750 1041503 - 1041539 + H 73 -11.1 -3.67285 | opp_overlap 1041496, overlap 1041496 1041503 TTCGCAAAGCTTAGA TGATGTTCATCATTTAT TCA ATAGATGTTGAGCATCA TTTAACCTATCTTGT RALTA_B0999 1041694 - 1043079 + | putative transport protein, MFS family; putative antibiotic resistance transporter RALTA_B1000 1044825 - 1043104 - | putative 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases TERM 751 1043713 - 1043737 + g 88 -15.7 -3.71848 | GGTGCGGTCGATGCT CGCGGTGATGG CGC CCACCACCGCG TTCTTGATCGGCGCG TERM 752 1044301 - 1044289 - G 70 -9.1 -3.87815 | opp_overlap 1044294 CGTCATGCCGATAAA GGCCA CCT TGGCC CAGTCGAAGGTCTTG TERM 753 1044464 - 1044435 - G 70 -12.1 -3.31144 | gap 1 TGTCCACGCCGACAA TGCCGC-GCCGGCC GTC GGCCGACCGCGGAA AGCACCCGCCATTCT RALTA_B1001 1045056 - 1045502 + | hypothetical protein; putative exported protein RALTA_B1002 1045980 - 1045543 - | conserved hypothetical protein; PUTATIVE MEMBRANE anchored protein TERM 754 1045787 - 1045775 - G 72 -5.5 -4.4009 | TTGTATCGGACAAAA CCCTC CGG GAAGG TGCGGTCGAGATATA RALTA_B1004 1047253 - 1046381 - | hypothetical protein RALTA_B1006 1048675 - 1047620 - | hypothetical protein RALTA_B1007 1050246 - 1048672 - | hypothetical protein TERM 755 1049093 - 1049110 + g 91 -8.3 -5.07567 | overlap 1049094 TTGACCGCGAGCCTC GCGCGCC AGTC GGCGCGG TTTTTTAGGCTGTGA TERM 756 1049094 - 1049109 + g 71 -11.8 -3.63817 | overlap 1049093 TGACCGCGAGCCTCG CGCGCC AGTC GGCGCG GTTTTTTAGGCTGTG RALTA_B1008 1053053 - 1050243 - | conserved hypothetical protein; VGR-RELATED PROTEIN RALTA_B1009 1053926 - 1053132 - | conserved hypothetical protein; putative exported PROTEIN TERM 757 1053480 - 1053515 + g 78 -13.2 -3.65581 | gap 1 CATGTGGAAGACTTC CAGCGCCTGCA-GGCGC GGC GCGCCGTGCGCGCGCAG TTCTTCCAGCTTGCT RALTA_B1010 1055269 - 1053923 - | conserved hypothetical protein; DUF876 RALTA_B1011 1056002 - 1055310 - | hypothetical protein TERM 758 1055750 - 1055775 + g 72 -3.8 -4.5442 | TGTTGCCGGCGTACA GCTTCAGCGG AACTTC CCGCGGCGGC TTTTGTGATTCCGGC TERM 759 1055938 - 1055964 + g 82 -15.8 -3.25823 | CGCTTCGCCGCAGCG GCCAGGCGCGCG CCA TGCCCGCCTGGC TTGCTGTACGCCCCC RALTA_B1012 1056260 - 1056889 + | conserved hypothetical protein; partial TRP motif RALTA_B1013 1056926 - 1057441 + | conserved hypothetical protein; DUF770 RALTA_B1014 1057434 - 1058924 + | hypothetical protein RALTA_B1015 1059019 - 1059522 + | conserved hypothetical protein; DUF796 TERM 760 1059542 - 1059565 + F 100 -18.2 -4.08689 | CCTGCAGTCGAGCCT TGCCGCGGCA GCGT TGCCGCGGCA TTTGCTTGTTCGCTC RALTA_B1016 1059583 - 1060056 + | conserved hypothetical protein; DUF1316 RALTA_B1017 1060152 - 1061990 + | conserved hypothetical protein; DUF879 TERM 761 1062460 - 1062418 - gf 71 -2.7 -4.57569 | gap 1 TCAGGCGTGGAAAAA GTACCGGCTGCCGTTCCA GCACGAAG TCGACCG-CAACCGGCAC TACCTGCCACTGCTG RALTA_B1018 1061954 - 1063045 + | conserved hypothetical protein; DUF1305 TERM 762 1064211 - 1064187 - g 73 -7.8 -4.13304 | gap 1, overlap 1064190 AAAGTACTTCGAAAA GGA-CGCCGCG CTGG CGCGGCGCTTC CAGGTGGTCAAGGTG clpB2 1063126 - 1065855 + | Chaperone clpB TERM 763 1067916 - 1067865 - g 75 -15.8 -2.9348 | gap 2, opp_overlap 1067887, overlap 1067856 1067857 TGGAAACCGCAGACA GCGGCGCCTTGCGCGG-CGGC-GC GGGCAT GCTGCTGACCGCGCACGGCGCCGG CACCAGTGTGCCCTT TERM 764 1067887 - 1067929 + G 80 -16.2 -3.14132 | opp_overlap 1067856 1067857 1067865 CTTGCGCGGCGGCGC GGGCATGCTGCTGACCGCGC ACG GCGCCGGCACCAGTGTGCCC TTGCTCGACAGCGAG RALTA_B1020 1065896 - 1068694 + | conserved hypothetical protein; VGR-RELATED PROTEIN RALTA_B1021 1068771 - 1069640 + | hypothetical protein TERM 765 1069943 - 1069930 - g 82 -6.7 -4.68593 | opp_overlap 1069929 1069930 GTGATCACGGAAAAA GGGTA CCTG TACCC CTTTGCAACCGAGAT TERM 766 1070902 - 1070919 + G 70 -8.3 -3.90318 | opp_overlap 1070881 1070880 GCCAGGAACACACTG GCGCCGC TCGC GCGGAGC TTTGTGACATGGTAC TERM 767 1072017 - 1072031 + G 82 -4.2 -5.01732 | overlap 1072011 1072019 CAAGGTGTCGAGCCG CGCACT TTT AGTGGG TTTTTTGGGGAAATT RALTA_B1022 1069651 - 1072395 + | hypothetical protein TERM 768 1072888 - 1072901 + G 100 -3.8 -5.60993 | opp_overlap 1072897, overlap 1072882 GTACTGGCCGTACCT TGGG ACAAGG CCCA TTTTTTTATCGGGCG TERM 769 1073369 - 1073385 + G 71 -2.1 -4.62069 | CCCAGACCGGCGGTC CTGCGGG TGA CGAGCAG TTTTTGGCATACCGC RALTA_B1023 1072408 - 1073478 + | hypothetical protein TERM 770 1074591 - 1074606 + G 84 -4.6 -5.00616 | overlap 1074593 AGGCGCTGGCCCAAT TGCGCG AGGT CGCGGA TTTTTTCCGACGCAC RALTA_B1025 1073696 - 1074787 + | hypothetical protein RALTA_B1026 1075713 - 1074820 - | conserved hypothetical protein; putative TRANSMEMBRANE PROTEIN RALTA_B1027 1076585 - 1075767 - | putative outer membrane protein; OmpA/MotB domain RALTA_B1028 1077631 - 1076642 - | hypothetical protein TERM 771 1077085 - 1077110 + g 74 -14.8 -3.01712 | overlap 1077087 TGCGGCGCAAGCGCA CATGCTGGCC CTGGCC GGCCAGCATG TGTTCGAGGCCGGCC RALTA_B1029 1081584 - 1077628 - | conserved hypothetical protein; putative TRANSMEMBRANE PROTEIN TERM 772 1081104 - 1081126 + g 71 -9.8 -3.78934 | overlap 1081107 AGTTGCGCGTGCCGC CAATGCCGTG GAT CACGGCGCTG TTCTTGTCGGCGAAC RALTA_B1030 1083136 - 1081649 - | conserved hypothetical protein, putative TRANSMEMBRANE PROTEIN RALTA_B1031 1083464 - 1083195 - | hypothetical protein RALTA_B1032 1084409 - 1083552 - | conserved hypothetical protein, putative transmembrane protein, putative peptidase TERM 773 1084367 - 1084323 - G 84 -15.8 -3.53012 | gap 1, overlap 1084349 GCGCGCTGCCGCAAA GCAGC-GCTGCCGTACTGC GGGAAGAA GCAGCACGGCAGCAGCGGC AACCATCAACACGAA TERM 774 1084526 - 1084536 + H 79 -8.2 -4.32857 | overlap 1084508 1084507 TCCGGGGTGGTGTCC CCCG TAT CGGG TTTGTCTTTCGACGA TERM 775 1085308 - 1085279 - g 90 -7.7 -5.02231 | overlap 1085281 1085282 CAAAAATATCAAAAA GACGGCAACGTCG AAGC CGACGGCGCCAGC GGAAAAGAGCGCCAC TERM 776 1085306 - 1085281 - g 72 -8.9 -4.09348 | overlap 1085279 1085282 AAAATATCAAAAAGA CGGCAACGTCG AAGC CGACGGCGCCA GCGGAAAAGAGCGCC RALTA_B1033 1084683 - 1085525 + | conserved hypothetical protein, putative TRANSMEMBRANE PROTEIN TERM 777 1087605 - 1087572 - g 70 -15.3 -2.78384 | overlap 1087555 TGGTGTTGGACGACA GCGACGGCCAGCTGC GCAC GCAACTGGCCACCAC GCTGCAGTCGACCCA RALTA_B1034 1085672 - 1088968 + | conserved hypothetical protein; VGR-RELATED PROTEIN TERM 778 1090545 - 1090555 + G 71 -2.4 -4.55287 | opp_overlap 1090541, overlap 1090541 CTGAAGAACATCGAG GGCG CGT CGCA TTTTATCTACATCGA pld2 1088979 - 1091978 + | Phospholipase D RALTA_B1036 1091991 - 1093391 + | conserved hypothetical protein; putative exported protein RALTA_B1037 1093426 - 1093767 + | hypothetical protein RALTA_B1038 1093770 - 1094126 + | hypothetical protein TERM 779 1094396 - 1094406 + G 77 -4 -4.7254 | ATTTTTGATATTCCG GTTA ACT TAAC TTTTTACTGGGCGAT RALTA_B1040 1094183 - 1095535 + | conserved hypothetical protein; putative exported protein TERM 780 1095915 - 1095925 + F 78 -6.8 -4.59773 | CGTGGGCAGCAGACC GCAG CGA CTGC TTTTTCCAAATCGGA RALTA_B1041 1095980 - 1097380 + | conserved hypothetical protein; putative exported protein RALTA_B1042 1097782 - 1098897 + | putative NADH-DEPENDENT FLAVIN OXIDOREDUCTASE OXIDOREDUCTASE PROTEIN; similar to B.subtilis namA RALTA_B1043 1098927 - 1099349 + | putative glyoxalase; includes bleomycin resistance proteins and dioxygenase RALTA_B1044 1099586 - 1099726 + | hypothetical protein RALTA_B1045 1101600 - 1099759 - | putative hybrid sensor histidine kinase RALTA_B1046 1102265 - 1101603 - | putative Response regulator, LuxR family TERM 781 1101885 - 1101859 - G 75 -5 -4.56597 | overlap 1101861 1101862 GCCTCGCCGGAAAAA TATGTGCCGCCT GCC AGGCAGCACGCG ATGGCATCCTCGATC TERM 782 1101883 - 1101861 - G 73 -9.8 -3.90048 | overlap 1101859 1101862 CTCGCCGGAAAAATA TGTGCCGCCT GCC AGGCAGCACG CGATGGCATCCTCGA TERM 783 1102404 - 1102429 + rH 100 -7.5 -5.75342 | CCGCACCACTTTTGC TACCCACTACC ACCC GGCTGTGGGTA TTTTTTTTGCCGGCA TERM 784 1102500 - 1102475 - RH 100 -16.9 -5.26875 | gap 1, opp_overlap 1102475 GCGTGAATGAAAAAA GCCGG-CACCGC GGG GCGGTGGCCGGC TTTGGTGTGAGCCGC TERM 785 1102475 - 1102500 + rH 100 -16.9 -3.83026 | gap 1, opp_overlap 1102475 GCGTGAATGAAAAAA GCCGG-CACCGC GGG GCGGTGGCCGGC TTTGGTGTGAGCCGC RALTA_B1047 1104157 - 1102550 - | hypothetical protein TERM 786 1103965 - 1103987 + Gg 78 -13.4 -3.63968 | AGGTTCCGTCCGCGG CGGTAGTGGC GGT GCCGCTGCCG TTTGCGCATTTGGCC TERM 787 1104229 - 1104267 + Gr 89 -12.9 -4.1899 | overlap 1104230 CTGGCTCATGCAGGA CCCCGCCCACGGGACGG CTGAC CCGCCCCGCGGGCGCGA TTTTCCGTGAAATAC TERM 788 1104230 - 1104266 + Gr 84 -16.4 -3.11073 | overlap 1104229 TGGCTCATGCAGGAC CCCGCCCACGGGACGG CTGAC CCGCCCCGCGGGCGCG ATTTTCCGTGAAATA RALTA_B1048 1103937 - 1104311 + | hypothetical protein; putative exported protein RALTA_B1049 1105009 - 1104365 - | hypothetical protein TERM 789 1104656 - 1104634 - G 91 -12.6 -4.56597 | CGCCTTCGGCAAAAA GGCGCGCGCG GAC CAGGCGCGCC GGCACTTGCCATTGC TERM 790 1104771 - 1104716 - G 72 -8.9 -4.07568 | gap 2, opp_overlap 1104760, overlap 1104718 GTCGGGCCGGGAAAA GACCAGGCCGGCAAACTGGCGCGACCA CGTG CGCTCGGG-CGGCTTGCCGGCCAGG-C GCGGGCATTCGCTGT TERM 791 1104770 - 1104718 - G 74 -12.6 -3.63744 | gap 1, opp_overlap 1104760, overlap 1104716 CGGGCCGGGAAAAGA CCAGGCCGGCAAACTGGCGCGACCA CGTG CGCTCGGG-CGGCTTGCCGGCCAGG CGCGGGCATTCGCTG RALTA_B1050 1105845 - 1105129 - | putative cyclic nucleotide-binding protein TERM 792 1105897 - 1105918 + H 70 -7.9 -4.0162 | overlap 1105892 ATGGTGTAAGCCTTG CCTGGCGCG GGTT TGCGGCAGG TTTGTCGTCTCGACG TERM 793 1106002 - 1105977 - H 75 -3.1 -4.91109 | overlap 1105981 CTTCCACCAGAAAAA GTGACAGCGCC GCAA GGCGCCAGAAC GACAGCGCCCGAATG RALTA_B1051 1106015 - 1107688 + | putative AMP-dependent synthetase and ligase TERM 794 1107716 - 1107696 - T 86 -16.1 -3.1247 | opp_overlap 1107695 ACGTCTGAGACGCAA GCGGCGCCA TGC CGGCGCCGC GTCGGTTCAGCGTGC RALTA_B1052 1108001 - 1107723 - | hypothetical protein TERM 795 1108170 - 1108146 - R 71 -9.2 -3.81146 | overlap 1108147 GGCCGGAATGAAGAA TCGCGGGCAA AGCTG TCGCCCGCGT TGCCACCGCCACGAT TERM 796 1108169 - 1108147 - R 70 -12.7 -2.88366 | overlap 1108146 GCCGGAATGAAGAAT CGCGGGCAA AGCTG TCGCCCGCG TTGCCACCGCCACGA RALTA_B1054 1108489 - 1108241 - | hypothetical protein TERM 797 1108785 - 1108744 - g 93 -21 -3.14132 | gap 2, opp_overlap 1108760 1108764 TTGCTGCCCTATGAA GCGCTCGACGGCGGCAGCGC CGCG ACGCTGCCGCCGTC--GCGC TATCGCGCCATGGCG TERM 798 1109541 - 1109586 + G 83 -14.7 -3.53761 | gap 1 TGCACTGGCGGTGGA TGGCTCGGCGCAGTC-GCTGGC CAC GCTGGCTGACTGGGCCGGGCAA TTTCGCAGCCGCTTC pmi 1108570 - 1109751 + | phosphomannose isomerase RALTA_B1056 1110163 - 1109918 - | hypothetical protein; putative exported protein RALTA_B1057 1110639 - 1110271 - | hypothetical protein estB 1111390 - 1110698 - | Carboxylesterase 2 (Esterase II) TERM 799 1111066 - 1111041 - G 77 -11.1 -3.85698 | gap 1, opp_overlap 1111054 CCGCCTTGCGAGAAA CCCGCCAGCACG ATG CGTGC-GGTGGG AATGCCGCGCGCATT TERM 800 1111259 - 1111245 - G 75 -4.9 -4.66537 | overlap 1111246 1111247 1111249 TGCGGGAAGATAAAA CGCAC GCCTG GCGCG GCCGGCAGCCGCAAC RALTA_B1059 1111795 - 1111511 - | hypothetical protein RALTA_B1060 1112872 - 1111946 - | conserved hypothetical protein; hydrolase domain TERM 801 1113073 - 1113087 + H 85 -5.7 -5.00884 | opp_overlap 1113073 GGCGATTCCATTACA TGACC CAAGC GGTCA TTTTTTCAGGCCCAT RALTA_B1061 1113205 - 1113591 + | conserved hypothetical protein; putative exported protein RALTA_B1062 1113592 - 1113765 + | hypothetical protein TERM 802 1113784 - 1113820 + F 100 -19.4 -3.66356 | CCGTGTAGTGCATGG TGCCCCGAGGCTAGGG ACTTA CCCCAGCCCCGGGGCA TTTCAACTTGAGCGT RALTA_B1063 1113863 - 1114429 + | putative transcriptional regulator, TetR family TERM 803 1114462 - 1114489 + F 100 -12 -5.67063 | opp_overlap 1114462 GTGGCGCGTCGGAAA CCGTCATGTGGT GCAA GCCGCATGGCGG TTTTTTTATGATCCC TERM 804 1114695 - 1114710 + F 100 -4.6 -5.40072 | overlap 1114696 1114705 GGTGGTCCCATTGCA CGACCG GAAG CGGTCA TTTTTTTGAGACCGG TERM 805 1114696 - 1114709 + F 71 -8.1 -3.83561 | overlap 1114695 1114705 GTGGTCCCATTGCAC GACCG GAAG CGGTC ATTTTTTTGAGACCG RALTA_B1064 1114825 - 1115445 + | conserved hypothetical protein; putative exported protein RALTA_B1065 1115654 - 1116241 + | putative transcriptional regulator, TetR family RALTA_B1066 1116976 - 1116227 - | conserved hypothetical protein; Hydrolase, alpha/beta fold family TERM 806 1116887 - 1116854 - G 82 -16 -3.28712 | overlap 1116883 CGGCTGCGCCGACAA CGCGCCGTTGCCCG GCAGGT CGGGCAACAGCGGG CGTCCCAGCCCGGCT RALTA_B1067 1117992 - 1116973 - | conserved hypothetical protein; putative carbopeptidase domain TERM 807 1117150 - 1117174 + g 93 -9.2 -5.1356 | opp_overlap 1117146 CGGGTTGAAGATGCC CTCGCGCGAG AACAG CTGGCGCGGG TTTTTCTTGATCCAC TERM 808 1117495 - 1117453 - G 95 -19.2 -3.60627 | gap 1, opp_overlap 1117446 1117470 GCAGTCCACCGCAAA GCTGAGCG-GGCGCGGCAG CAGTTC CTGCCGCACCACGCGCAGC AGGGCGCTGCTTTCG RALTA_B1068 1119046 - 1118153 - | putative transcriptional regulator, LysR family TERM 809 1119173 - 1119119 - R 100 -14.2 -4.55023 | gap 2, overlap 1119120 1119121 GCCAATATGACAAAA CGGCTACGCCCGCCCGGGCCCGGTCC GCATG GGACCGG-CCGGGGCGGGACTGGC-G TAGCGGCCAGGCCGC TERM 810 1119178 - 1119120 - R 84 -15.9 -3.32291 | gap 1, overlap 1119119 1119121 CCAATATGACAAAAC GGCTACGCCCGCCCGGGCCCGGTCCG CATGGGAC CGG-CCGGGGCGGGACTGGCGTAGCG GCCAGGCCGCGTCGG TERM 811 1119177 - 1119121 - R 87 -19.4 -2.58651 | gap 1, overlap 1119119 1119120 CAATATGACAAAACG GCTACGCCCGCCCGGGCCCGGTCCG CATGGGAC CGG-CCGGGGCGGGACTGGCGTAGC GGCCAGGCCGCGTCG plcN3 1121352 - 1119196 - | PHOSPHOLIPASE C (PHOSPHATIDYLCHOLINE CHOLINEPHOSPHOHYDROLASE) SIGNAL PEPTIDE PROTEIN RALTA_B1070 1121636 - 1121403 - | conserved hypothetical protein; putative exported protein; sequence associated with plcN RALTA_B1071 1123801 - 1121735 - | hypothetical protein TERM 812 1123832 - 1123860 + r 70 -12.4 -3.12351 | gap 1 TCATCTGCGTTGTTG TGCGCCG-GCGGC AATG GCCGCGCGGCGGA TTGCGTGTGCCGCAA RALTA_B1072 1124704 - 1123979 - | putative transcriptional regulator; GntR family TERM 813 1124699 - 1124735 + g 75 -10.3 -4.08064 | opp_overlap 1124709 GGAATTGGCTTGGCT TTGCATTCAATTCGTCC AGT GGACAGATTGAATTCAA TTTTAGCAGCCGCTT RALTA_B1073 1124886 - 1126106 + | Serine-glyoxylate aminotransferase; Alanine-glyoxylate aminotransferase; Serine-pyruvate aminotransferase RALTA_B1074 1126221 - 1127525 + | transporter; PERMEASE TRANSMEMBRANE PROTEIN; MFS family TERM 814 1128262 - 1128238 - g 74 -12.1 -3.61398 | GGCCTCCGCCAACAA CCTGGTCGGAC TGC GCCCGACCATG GGGCTGATCAGCCGC RALTA_B1075 1127615 - 1129141 + | Amidase RALTA_B1076 1129251 - 1130699 + | General substrate transporter; Major facilitator superfamily MFS_1 RALTA_B1077 1130751 - 1131542 + | putative hydratase RALTA_B1078 1131723 - 1131568 - | conserved hypothetical protein; Cytochrome bd ubiquinol oxidase associated sequence appB 1132730 - 1131723 - | Cytochrome bd ubiquinol oxidase, subunit II appC 1134168 - 1132735 - | Cytochrome bd ubiquinol oxidase, subunit I TERM 815 1133811 - 1133786 - G 72 -4 -4.65263 | gap 1, overlap 1133791 ACCGTGGAAAAGAAA TGCAATCCGGG GCCGA CCCGG-TTCCA GCCGAACAGCATCAC TERM 816 1133858 - 1133837 - G 75 -6.5 -4.3898 | ATCACGCCGAGAAAA CCGGCTTCC AGGA AGAAGGCGG TCAGCACTTCGTAGG RALTA_B1082 1134532 - 1135332 + | conserved hypothetical protein, DUF81; putative membrane protein RALTA_B1083 1136263 - 1135292 - | putative transcriptional regulator, LysR family TERM 817 1136057 - 1136033 - G 71 -11.3 -3.55761 | CACCGAGCGCGCAAA GCGCACCAGCG ACT CGCCGGCGGGC GTGGGCTCGGTGCCG TERM 818 1137251 - 1137228 - g 89 -7.3 -4.82901 | overlap 1137230 CGCCGTGGAGAAAAA GCTGCGCGA CGCCTT CCGCGCCGC GGTCGCCAGCAACGA RALTA_B1084 1136407 - 1137411 + | conserved hypothetical protein;UPF0065; putative exported protein TERM 819 1137772 - 1137805 + G 71 -9.5 -3.73953 | CCACCTTCAACGGCT TTGTGCGCGCGGATG GCCG CGTCGGCACGCGCAA TTTCATCGGCATCCT uxaA 1137411 - 1138958 + | altronic acid hydratase gabD2 1138992 - 1140464 + | succinate-semialdehyde dehydrogenase I, NADP-dependent, similar to gabD TERM 820 1140951 - 1140930 - g 71 -10.1 -3.78775 | TGGCCGACGACGAAA TCTGCCTGC TGGT GCAGGCCGA AACCGTCACCGCGCT hpcH 1140500 - 1141306 + | 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase TERM 821 1141544 - 1141568 + G 73 -12.1 -3.46647 | overlap 1141542 TGCGCAGCGCGTGCC GGTGGTGCCGC AGG GCGGCAATACC TCTTTGATGGGTGGC RALTA_B1088 1141332 - 1142777 + | putative FAD-dependent OXIDOREDUCTASE PROTEIN; similar to D-lactate dehydrogenase RALTA_B1089 1142936 - 1144024 + | conserved hypothetical protein, Metallo-hydrolase/oxidoreductase motif kpsM 1144689 - 1145480 + | polysialic acid transport ATP-binding protein, ABC-2 kpsT 1145477 - 1146139 + | Polysialic acid transport ATP-binding protein TERM 822 1146738 - 1146712 - g 84 -7.8 -4.70659 | GTCTATATCGAAAAA CAGGTGCACGAC CAG GGCGAGCGCCTG AAGGCGGCGCGCCAG kpsE 1146136 - 1147269 + | capsule polysialic acid export protein kpsD 1147273 - 1149012 + | Polysialic acid transport protein TERM 823 1150120 - 1150137 + G 71 -9.9 -3.79043 | AAAGCGCTTTACGAC CTGGTTC GGGC GAACCAG TTTCCGTTCCTGGTG RALTA_B1095 1149016 - 1151295 + | putative glycosyltransferase involved in capsule biosynthesis, similar to kpsS RALTA_B1096 1151309 - 1151917 + | conserved hypothetical protein; putative anhydrase/acetyltransferase motif kpsF 1151955 - 1152917 + | polysialic acid capsule expression protein, putative Arabinose-5-phosphate isomerase TERM 824 1153168 - 1153195 + G 75 -8.5 -4.18488 | gap 2 GCGTCCTCGCAGACC TGCTCGCTGGTCG TCGA CGACC-GCG-GCA TTTATTACGATGCCT TERM 825 1153329 - 1153358 + G 78 -13.5 -3.54653 | opp_overlap 1153326 1153323 CAAGTACAACTATGC GCCTGCGCCGACA TCGC TGCCGGCGCAGCC TTATGTGCTGGCCGT TERM 826 1155035 - 1155002 - g 91 -12.5 -4.65895 | gap 1 CGGCGCATGGAAAAA TCGCTGCGCCAGAGCA ATA TGCCGTGGCGCAG-GA AGGACAGAATCACGA kpsC 1152898 - 1155120 + | Capsule polysaccharide transport protein kpsS 1155173 - 1156513 + | capsule polysaccharide export protein RALTA_B1101 1156644 - 1157351 + | putative transcriptional regulator, PadR-like family viuB 1157430 - 1158257 + | Siderophore-interacting protein TERM 827 1158285 - 1158316 + F 74 -14.6 -2.62184 | gap 1, opp_overlap 1158302 GCACGGTGTACGAGG GCGATGTGTTGCCAT AAG ATGGCA-CGCATCGC TACTGTCCAAGGGGA RALTA_B1103 1158337 - 1158729 + | conserved hypothetical protein; putative exported protein RALTA_B1104 1158852 - 1160081 + | putative PLP-dependent aminotransferase, similar to E.coli yfdZ of predicted function RALTA_B1105 1160760 - 1160095 - | putative cyclic nucleotide-binding protein RALTA_B1106 1161913 - 1160774 - | putative Enoyl-CoA hydratase; 3-2trans-enoyl-CoA isomerase RALTA_B1107 1162693 - 1161923 - | putative ENOYL-COA HYDRATASE ISOMERASE; similar to paaF (E.coli) TERM 828 1162033 - 1162010 - G 86 -13.8 -3.89501 | opp_overlap 1162024 GAACAGGTCGACAAA GCGCTCGCGC TCCA GCGCCAGCGC GGCCTGGCGCGGCAC mmsB 1163595 - 1162690 - | 3-hydroxyisobutyrate dehydrogenase TERM 829 1163164 - 1163124 - G 73 -16.2 -2.52464 | gap 1 TGCCGCCGCAATGGA CCAGGTTGCGGCCCATGCC GGCC AGCACGGGCCGCA-CCTGC GCGAACAGCGCTTCG TERM 830 1163586 - 1163616 + g 75 -4.6 -4.65895 | CCAGGCCGATGAAGG CGATATGCATGGGG TGT CTCCTTCCGTGTCG TTTTTGAATACCGCC mmsA 1165158 - 1163635 - | methylmalonate semialdehyde dehydrogenase RALTA_B1110 1166312 - 1165209 - | putative ACYL COA DEHYDROGENASE OXIDOREDUCTASE PROTEIN TERM 831 1166008 - 1165977 - G 78 -10.1 -4.19817 | gap 1, opp_overlap 1165994 1166003 TTCAGTCAGGCAAAA CGCGCC-GATCAGC TCGCC GCTGGCCAGGCGCG CCAGGTAGCGTTCCT TERM 832 1166515 - 1166504 - g 72 -3.6 -4.66163 | AGCGCCATGGAAAAA GGCA GTGT CGCC ATCTGTTTCGTCCAC RALTA_B1111 1166495 - 1167508 + | putative transcriptional regulator, AraC family RALTA_B1112 1168364 - 1167522 - | esterase D TERM 833 1167893 - 1167873 - G 71 -9.6 -3.67792 | CGACACCGAGCGAAA GCGCTGCG GATGG CGCTGCGC CAGCACCAGGGCACC TERM 834 1168142 - 1168176 + g 72 -13.5 -3.21416 | gap 1, opp_overlap 1168161, overlap 1168173 1168175 GAGCCACCAGCATCA GGCC-GTGCTCGGCGG CAAA CCGCTGCGCGCCGGCC TTGATCATGAAGGTC adhC 1169484 - 1168378 - | alcohol dehydrogenase class III; Glutathione-dependent formaldehyde dehydrogenase TERM 835 1169401 - 1169454 + g 71 -11 -3.53811 | gap 3, overlap 1169399 TTCCACCAGCACTTC GCCGGCG---CGCGGGCCGTCGAGGTC AAC GTCTTCGATGGTCAGCGGGGCGCCGGC TTTCCAGGCGATGGC RALTA_B1114 1171020 - 1169638 - | putative transporter, Major facilitator superfamily MFS_1 TERM 836 1170688 - 1170649 - G 76 -14.2 -3.39803 | gap 1, overlap 1170630 CAGCCACACGTAGAA CACGCGCGCC-AGCCAGAC GTT GTCGGGCAAGGTGCGCGTG GCCAGCGCAAAGGCC RALTA_B1115 1171950 - 1171033 - | putative aldo/keto reductase, oxydireductase, putative exported protein TERM 837 1171655 - 1171623 - G 79 -7.6 -4.4078 | overlap 1171624 1171625 TGGTGGCAAGGAAAA CCCTGTTGCGCGCA TTGGC CGCGCGCAGCAGAT CGCCGGTCACGGCTT RALTA_B1116 1172414 - 1172034 - | putative toxin of a toxin/antitoxin system, PIN domain RALTA_B1117 1172617 - 1172411 - | putative antitoxin of a toxin/antitoxin system gntT 1174155 - 1172824 - | high-affinity gluconate permease in GNT I system (GntP family) RALTA_B1119 1174796 - 1174404 - | conserved hypothetical protein, endoribonuclease L-PSP domain RALTA_B1120 1176304 - 1174850 - | D-aminoacylase (N-acyl-D-amino-acid deacylase) TERM 838 1175658 - 1175695 + g 72 -14.1 -3.18264 | gap 1 TGGGTCGCGTAGAGC GCGCCGGCGTTGGCC-AG CGG CTCGGCCAGCGCCAGCAC TTCCTCGGTCGGCGC RALTA_B1121 1177212 - 1176307 - | putative transcriptional regulator, RpiR family, phosphosugar-binding domain TERM 839 1176737 - 1176755 + g 74 -11.7 -3.72576 | overlap 1176718 ACCGGCAGGCCCAGG CGCGCCA GGCGG TGGCGCG TTTCATCGGCCAGGA TERM 840 1177013 - 1176965 - G 81 -10.2 -4.36914 | overlap 1176966 CCGGGCTGCAGAAAA CGCGCG-CCCACCGCCGCGGCCTG GGC CAGGC-GCAGCTTCAGGTCGCGCA CGTCGCGGCAACCGA TERM 841 1177877 - 1177905 + G 71 -11 -3.61398 | gap 1, overlap 1177877 TCGCACTGGTCGATT C-GGCCGAGCTGG TCGA CCAGCTCGGCAAG TTCTTCCGGCAGCGC RALTA_B1122 1177438 - 1178706 + | putative enzyme, amino acid aldolase or racemase domain kdgK 1178720 - 1179655 + | 2-Keto-3-deoxygluconate kinase eda 1179707 - 1180351 + | multifunctional: 2-keto-3-deoxygluconate 6-phosphate aldolase; 2-keto-4-hydroxyglutarate aldolase; oxaloacetate decarboxylase TERM 842 1180399 - 1180366 - T 100 -25.5 -4.07687 | opp_overlap 1180372, overlap 1180372 AGCTCGCCGCCAAAA GCAAAACGGCACGCC CGAT GGCGTGCCGTTTTGC TGTGAATGCAGCCCT TERM 843 1180393 - 1180372 - T 100 -17.3 -4.67038 | opp_overlap 1180372, overlap 1180366 CCGCCAAAAGCAAAA CGGCACGCC CGAT GGCGTGCCG TTTTGCTGTGAATGC TERM 844 1180372 - 1180393 + T 100 -17.3 -4.3586 | opp_overlap 1180366 1180372 CCGCCAAAAGCAAAA CGGCACGCC CGAT GGCGTGCCG TTTTGCTGTGAATGC RALTA_B1125 1180553 - 1180422 - | putative lipoprotein RALTA_B1126 1182014 - 1180698 - | putative diguanylate phosphodiesterase (EAL domain) TERM 845 1181894 - 1181868 - G 90 -18 -3.53444 | GCAGGCGCTGGCAAA GCGATCCAGGCG GAT CGCCAGGATCGC CGCCCGGTGCCCGGC RALTA_B1127 1183595 - 1182282 - | putative transporter; putative exported protein; putative inner membrane protein; DUF21, 2 CBS (cystathionine-beta-synthase) domains and transport associated domain CorC RALTA_B1128 1183789 - 1184682 + | putative transcriptional regulator RALTA_B1129 1185286 - 1184657 - | conserved hypothetical protein, signal peptide TERM 846 1185704 - 1185735 + H 85 -15.8 -3.53444 | opp_overlap 1185694 ATGAACGGAGCTCGC CCGCATGGCCTGGC GCTT GCCTGGCCGTGTGG TTTGCCGCGCCCTGC TERM 847 1185762 - 1185809 + H 76 -10.6 -3.91798 | gap 3, overlap 1185762 CTGCGCATCGCAGGG C-GCGGTGGTCCGTGCGC-GCGC CGACA GCGCGGCGCGCGGGTCGC-GCAG TTTCGTTGACCCTTC ribB 1185863 - 1186570 + | 3,4 dihydroxy-2-butanone-4-phosphate synthase TERM 848 1186604 - 1186645 + F 76 -5.7 -4.64766 | gap 1, opp_overlap 1186636, overlap 1186583 GATGCGGGCCCGCCG GCGCGCCGCAAT-CCGCGCA TCC TGTGCGACAATGCGGATCGC TTTTTCCCGTCTACA TERM 849 1186721 - 1186695 - g 74 -13.1 -3.57144 | gap 1, opp_overlap 1186697 TTCCGCATTGTTAAA CACGCAG-CAGC GCTC GCTGGCTGCGTG TTAGGCCTGGCCATG RALTA_B1131 1186674 - 1187258 + | conserved hypothetical protein; puttaive exported protein RALTA_B1132 1187725 - 1187294 - | conserved hypothetical protein; putative exported protein RALTA_B1133 1187928 - 1188296 + | conserved hypothetical protein; putative exported protein TERM 850 1188568 - 1188554 - f 70 -12.8 -2.87564 | opp_overlap 1188554 1188552, overlap 1188527 CCACGCGGGCATATA GCCCCG CGT CGGGGC CTCGCCACTCGGCGC TERM 851 1189192 - 1189216 + GF 75 -15 -2.71144 | opp_overlap 1189189, overlap 1189181 CAAGCGCAAGGACGA GCTGGCGTCG TTCCT CGGCGCCAGC TACTTCCGCGCGCTG mdoG 1188665 - 1190263 + | periplasmic glucans biosynthesis protein TERM 852 1190666 - 1190610 - gT 73 -11.4 -3.60627 | gap 2, opp_overlap 1190648 CGACGGCACCGTAAA GGTGGACACCGGCCCCGCGCC--CGAGC GCA GCTCGATGGTGCCGCGCCAGTGGCCGCC GCATATCGTCACCGG TERM 853 1191098 - 1191113 + GT 74 -11.8 -3.53224 | opp_overlap 1191091 1191093, overlap 1191093 1191084 GCAACGAAGACGTGA CCCGCG TCTT CGCGGG TTTGCGCGCCACCTA TERM 854 1191654 - 1191678 + GT 71 -8.5 -3.85698 | overlap 1191633 1191669 1191673 GGGCCGCGGCCCGCT GTCGGGCGAGA TCC TGTCGCACGAC TTTGTCGAGGCCGCG mdoH 1190236 - 1192860 + | glycosyltransferase, synthesis of membrane-derived oligosaccharide/synthesis of osmoregulated periplasmic glucans TERM 855 1192908 - 1192877 - T 100 -24.6 -3.54424 | opp_overlap 1192880 1192883, overlap 1192880 1192883 GCGTATTGCCTGAAA CAAGAACGGCCCGC ATCA GCGGGCCGTTCTTG TTGGCACTGGCGCGT TERM 856 1192880 - 1192905 + T 100 -20.5 -3.63515 | opp_overlap 1192880 1192877 1192883, overlap 1192883 TATTGCCTGAAACAA GAACGGCCCGC ATCA GCGGGCCGTTC TTGTTGGCACTGGCG TERM 857 1192905 - 1192880 - T 100 -20.5 -3.9122 | opp_overlap 1192880 1192883, overlap 1192877 1192883 TATTGCCTGAAACAA GAACGGCCCGC ATCA GCGGGCCGTTC TTGTTGGCACTGGCG TERM 858 1192883 - 1192902 + T 95 -16.4 -3.95324 | opp_overlap 1192883 1192880 1192877, overlap 1192880 TGCCTGAAACAAGAA CGGCCCGC ATCA GCGGGCCG TTCTTGTTGGCACTG TERM 859 1192902 - 1192883 - T 100 -16.4 -4.08557 | opp_overlap 1192880 1192883, overlap 1192880 1192877 TGCCTGAAACAAGAA CGGCCCGC ATCA GCGGGCCG TTCTTGTTGGCACTG RALTA_B1136 1193532 - 1192927 - | conserved hypothetical protein; putative signal peptide TERM 860 1193725 - 1193779 + H 78 -6.4 -4.66609 | gap 2, opp_overlap 1193719, overlap 1193721 1193727 ATTCACCAATCCTGC CAGGATTGCCAGCTTTGCCGGAGCCG GTTTG CGGCA--GGCAAATCTGGCAGGCCGG TTTTTACGTGCCATC bcr 1193914 - 1195137 + | Bicyclomycin resistance protein ;Sulfonamide resistance protein; MFS family RALTA_B1138 1196028 - 1195159 - | Mechanosensitive (MS) channel TERM 861 1196187 - 1196215 + r 73 -8.9 -4.0371 | opp_overlap 1196182 1196191 1196194, overlap 1196189 AAGCAAATAATTGTT AAGACAAGCCG CCTTGCA CGGCTTGTCTG TTTATATCGCAAATG TERM 862 1196189 - 1196213 + r 73 -11.5 -3.61232 | opp_overlap 1196182 1196191 1196194, overlap 1196187 GCAAATAATTGTTAA GACAAGCCG CCTTGCA CGGCTTGTC TGTTTATATCGCAAA RALTA_B1139 1197445 - 1196243 - | ammonium transporter, Rh-like family TERM 863 1196612 - 1196576 - G 82 -16.5 -3.37727 | overlap 1196578 GAACATATAGACGAA CAGCGCGCCCGCCACGG CAC CCGTGACCAGCGCGCCA AGCGGATGCATCAGG TERM 864 1196610 - 1196578 - G 86 -19.1 -3.24637 | overlap 1196576 ACATATAGACGAACA GCGCGCCCGCCACGG CAC CCGTGACCAGCGCGC CAAGCGGATGCATCA TERM 865 1196844 - 1196824 - G 74 -12.5 -3.65224 | AGCCCACCGCAAGAA TCCAGGCGC CCA GCGCCAGGA ACGGGATGTTGGACG TERM 866 1197193 - 1197179 - G 77 -4.3 -4.72272 | GGTTGCCAGGAAAAA GAACT TGACC AGTTC GTAACCGTTTTTCTG TERM 867 1197313 - 1197329 + g 81 -2.1 -5.06414 | CCACCAGGATCTTTA CCAGCGC GTT GACCTGG TTTTTCTTGCGCACC hupB2 1197943 - 1198224 + | DNA-binding protein HU-beta, NS1 (HU-1), plays a role in DNA replication and in rpo translation TERM 868 1198250 - 1198266 + F 100 -13.7 -5.71712 | opp_overlap 1198250 TCCAAAGCGAAAGAA GCGGCCT GGC AGGCCGC TTTTTTTATGTGCCG TERM 869 1198266 - 1198250 - f 90 -13.7 -4.05026 | opp_overlap 1198250 TCCAAAGCGAAAGAA GCGGCCT GGC AGGCCGC TTTTTTTATGTGCCG TERM 870 1198769 - 1198748 - g 76 -13.7 -3.40403 | opp_overlap 1198764 GGCGGTGGACGACAA CGGCACCCC CGCC GAGGTGCCG CCGCTGGAGCCGCGC RALTA_B1141 1198401 - 1198886 + | putative acyl-coA thioester hydrolase RALTA_B1142 1198893 - 1199390 + | conserved hypothetical protein; putative exported protein, creA family phoC 1200258 - 1199416 - | Major phosphate-irrepressible acid phosphatase precursor RALTA_B1144 1202056 - 1200308 - | putative CoA ligase synthetase TERM 871 1201899 - 1201916 + g 78 -6.9 -4.57073 | opp_overlap 1201874, overlap 1201892 1201888 GCCAGCAGCAGCTCA CGCAGCG TGGG CGGTGCG TTTTTCCAGACGGTG TERM 872 1202130 - 1202104 - R 100 -22.3 -3.82097 | opp_overlap 1202094 GGGAAATGCAGGAAA GCGGCCGGCGC AGTCA GCGCCGGCCGC CTTGCAACGCTTGCG RALTA_B1145 1202918 - 1202154 - | Dehydrogenase/reductase nhoA 1204022 - 1203156 - | Arylamine N-acetyltransferase RALTA_B1147 1204739 - 1204050 - | putative transcriptional regulator; CRP/Fnr family RALTA_B1148 1204952 - 1205449 + | conserved hypothetical protein; putative membrane protein; DUF962 RALTA_B1149 1206808 - 1205450 - | putative sensor histidine kinase RALTA_B1150 1207483 - 1206809 - | putative response regulator, OmpR family RALTA_B1151 1207850 - 1207500 - | conserved hypothetical protein; putative exported protein TERM 873 1207916 - 1207872 - H 91 -12.1 -4.2558 | CAGTTTGCACCAAAA CAGCTGAATGCGGGCTGAACG CAG CGCTCAGGGCACGTTCAGCCG GCGCTGCCGACAATG TERM 874 1208232 - 1208259 + G 70 -12.6 -3.28712 | GAACGGTAGCGTCCA GACGCGCGCGCA GCGT TGCGCGCGGGCC TTCTCGCGGCAGCCA RALTA_B1152 1207886 - 1208299 + | hypothetical protein TERM 875 1208368 - 1208328 - f 70 -10.4 -3.6682 | gap 1, opp_overlap 1208340, overlap 1208340 TTGCACTGAGGCAAA GCCGCGACAAAACCCGGGG TTTT CACCGGGTTTTG-CGCTTC GCATGCACGAAAACC TERM 876 1208340 - 1208357 + F 76 -8.3 -4.19506 | opp_overlap 1208340 1208328 AAAGCCGCGACAAAA CCCGGGG TTTT CACCGGG TTTTGCGCTTCGCAT TERM 877 1208357 - 1208340 - f 79 -8.3 -4.39002 | opp_overlap 1208340, overlap 1208328 AAAGCCGCGACAAAA CCCGGGG TTTT CACCGGG TTTTGCGCTTCGCAT RALTA_B1153 1208371 - 1208961 + | putative Histone-like DNA-binding protein TERM 878 1209011 - 1208983 - T 81 -11.8 -3.86346 | opp_overlap 1208988, overlap 1208988 CCAGTTGTCCAGAAA GAAAAGGAGCCG CTTGC CGGCTCCTTTTT TTATTGCCGCCGGCG TERM 879 1209006 - 1208988 - T 100 -11.7 -4.99043 | opp_overlap 1208988, overlap 1208983 TGTCCAGAAAGAAAA GGAGCCG CTTGC CGGCTCC TTTTTTTATTGCCGC TERM 880 1208988 - 1209006 + T 100 -11.7 -5.7946 | opp_overlap 1208983 1208988 TGTCCAGAAAGAAAA GGAGCCG CTTGC CGGCTCC TTTTTTTATTGCCGC TERM 881 1209147 - 1209169 + T 100 -14.8 -5.4505 | TTCCGGAAGCTTCCG CCCGCGGCTG CAA TGGCCGCGGG TTTTTTATTGGGCGG RALTA_B1154 1209573 - 1209205 - | putative isomerase, similar to 5-carboxymethyl-2-hydroxymuconate isomerase TERM 882 1209729 - 1209708 - R 100 -15.1 -4.2349 | opp_overlap 1209713 TCGCCAGATGCAAAA CGGGGCACC CGTG GGCGCCCCG CTGGAGTTTGCATGG RALTA_B1155 1210351 - 1209755 - | hypothetical protein RALTA_B1156 1212160 - 1210538 - | Putative Methyl-accepting Chemotaxis protein TERM 883 1211850 - 1211824 - G 82 -17.3 -3.04144 | gap 1 CGTCCAGCTGCAACA GCGCCGCCG-CG ATCT CGTCGGCGGCGC CGTCGCGCTCGGTGC TERM 884 1212074 - 1212053 - G 71 -11.5 -3.63068 | GTAGACCAGGGCAAA GGCGGCGCA CAGG CGCGCCACC AGCGGCAGGCGGCCC RALTA_B1157 1212412 - 1214262 + | Putative Diguanylate cyclase (GGDEF domain) and c-di-GMP phosphodiesterase (EAL domain)) RALTA_B1158 1215006 - 1214269 - | putative response regulator TERM 885 1215275 - 1215251 - H 89 -11.5 -4.30576 | overlap 1215252 CCGGCACTACGAAAA GTTGTCCACAG GAA CTGTGGACAAG CGGGTCGACGCTGCC TERM 886 1215274 - 1215252 - H 80 -15 -3.18024 | overlap 1215251 CGGCACTACGAAAAG TTGTCCACAG GAA CTGTGGACAA GCGGGTCGACGCTGC TERM 887 1215362 - 1215335 - H 100 -9 -5.00616 | overlap 1215338 1215342 CGGCGTGCCAAAAAA GAAGGCAGCGCC GACG GGCGGCGCCTAC ATCCGGACCATGCTG TERM 888 1215359 - 1215338 - H 91 -9.3 -4.61482 | overlap 1215335 1215342 CGTGCCAAAAAAGAA GGCAGCGCC GACG GGCGGCGCC TACATCCGGACCATG TERM 889 1216042 - 1216054 + G 72 -4.7 -4.43501 | overlap 1216017 1216030 AGGCGAGGGCGTTCT CCACG CAC CGCGG TTTTGTCAATCGGTT RALTA_B1159 1215372 - 1216862 + | putative cardiolipin synthetase; phospholipase D family. TERM 890 1217269 - 1217236 - g 74 -12.3 -3.57792 | gap 1, opp_overlap 1217240 1217263, overlap 1217237 CCATGGAGGCCGAAA TCGGCGG-GCTGCGCC CAG GACGCGGCGCCGCCGC GCATGCGCGCGCCTG TERM 891 1217268 - 1217237 - g 74 -15.8 -2.74461 | gap 1, opp_overlap 1217240 1217263, overlap 1217236 CATGGAGGCCGAAAT CGGCGG-GCTGCGCC CAG GACGCGGCGCCGCCG CGCATGCGCGCGCCT TERM 892 1217240 - 1217284 + G 85 -16.4 -3.65902 | gap 2, opp_overlap 1217237 1217236, overlap 1217263 GGAGGCCGAAATCGG CGGGCTGCGCCCAGGACGCGGC GCC GCCGCG-CATGCGCGC-GCCTG TTTGCGTGCGGTGGG RALTA_B1160 1216983 - 1217627 + | putative transcriptional regulator, TetR family TERM 893 1217713 - 1217686 - f 100 -16.4 -5.60993 | CGCGGCATAAAAAAA TGCCACGATGGC GGGG ACCATCGTGGCA ACGTAAGGAGCCAGG RALTA_B1161 1217984 - 1218316 + | putative lipoprotein RALTA_B1163 1218395 - 1218574 + | hypothetical protein RALTA_B1164 1219023 - 1218598 - | hypothetical protein RALTA_B1165 1220389 - 1219268 - | Phage integrase TERM 894 1219594 - 1219565 - G 73 -10.5 -3.93256 | GATACGGCGAAACAA CGGGCCGCGGTCG ATTC CGGCGGCGGCCAG CCATGCCTCCAGGGC TERM 895 1221001 - 1220972 - g 73 -12.1 -3.53012 | gap 1, overlap 1220998 1220999 CCGCGCGCGCCGAAA CGGCT-GCGGCCGC GTG GCAGCAGCAAGCCG AAGCGCTGCGCGCCG RALTA_B1166 1220503 - 1221453 + | hypothetical protein RALTA_B1167 1221522 - 1222052 + | hypothetical protein TERM 896 1222382 - 1222407 + G 77 -15.5 -3.11687 | gap 1, opp_overlap 1222381 1222380, overlap 1222366 GCCTGGGTCCAAAGG GGCACCAGC-GC CTT GCTGCTGGTGCC TTCCATCGTGATTCC RALTA_B1168 1222049 - 1222522 + | hypothetical protein RALTA_B1169 1224107 - 1222530 - | AMP-dependent synthetase and ligase TERM 897 1223702 - 1223680 - G 70 -12.6 -3.28712 | CGGTGCGTGGCACAA GCCGGCGCCG GGT CGGCATCGGC ATAGAGGCGCAGCGT TERM 898 1223725 - 1223741 + g 75 -5 -4.56597 | opp_overlap 1223708, overlap 1223727 CGCAGCGTGGTGCCG GGCGCC AGTTC GGCGGC TTTTTCCACGACGGC TERM 899 1224261 - 1224276 + H 75 -4 -4.70659 | opp_overlap 1224261 CTCGCCGGACAGATA CTGTAT ATTT GTACAG TTTTTCGCTGTCCCG RALTA_B1170 1224347 - 1226617 + | ATP-dependent DNA helicase, DEAD_2 RALTA_B1171 1226752 - 1227069 + | putative thiol-disulfide isomerase/thioredoxin RALTA_B1172 1227524 - 1227093 - | putative dioxygenase/Glyoxalase TERM 900 1228152 - 1228209 + G 100 -21.9 -3.89346 | gap 1 GCGCGAGCGCTTCGT CGGCATCGCGCCGGCCGGTGCGCCGCGG GAA CTGCG-CGCGCTGGTCGAGGCGCTGCCG TTTATCCGCTACAAC RALTA_B1173 1227658 - 1228551 + | putative transcriptional regulator, LysR RALTA_B1174 1228883 - 1228548 - | hypothetical protein TERM 901 1228921 - 1228947 + r 89 -15 -3.95073 | GGGGTGGCTTGTCAG GCGCGCCGGCGC CGG GCGGCGGCACGC TTTCTCAATCTAGCA RALTA_B1175 1229350 - 1229009 - | conserved hypothetical protein; putative exported protein RALTA_B1176 1230991 - 1229528 - | RND efflux system, outer membrane lipoprotein, NodT family TERM 902 1230249 - 1230292 + g 74 -14.6 -3.05384 | gap 1, opp_overlap 1230227 1230229 AGCCGGTAGCGCGCG GCGCTGCGCGCGGC-TTGC AGCGGGG GCAGCGTGGCGCGCAGCGC TTCAGTGCGGGCACG TERM 903 1230731 - 1230770 + g 72 -14.2 -3.21099 | overlap 1230694 1230707 CGCGCGGCGCAGGTT GGCGCTGGCGGCGCGGAT GTCG GTGTTTGCCGCCAGCGCC TTCGTGATCAGCCGG RALTA_B1177 1231896 - 1230988 - | putative secretion protein, HlyD family RALTA_B1178 1232111 - 1231893 - | conserved hypothetical protein; putative exported protein; associated to putative secretion protein and putative transporter TERM 904 1231938 - 1231925 - G 72 -3.7 -4.57569 | overlap 1231926 GCACCGCGGCAAAAA CGGCG GCCA CGGCG CCCAGGACGATCACA RALTA_B1179 1234128 - 1232137 - | putative transporter; Fusaric acid resistance domain TERM 905 1232375 - 1232321 - G 93 -19.3 -3.53091 | AGTTGCGCGCGGAAA TGCCGC-GCCAGCGCGGCCAGCACGCG GCG CACCGGCTTG-CGCGCTGGCTGCGGCA AGTCCGGCAGCGCCC TERM 906 1234163 - 1234218 + H 90 -18.3 -3.01791 | opp_overlap 1234150, overlap 1234158 1234180 AAGGTTGGGGGCGCG TGCCGCCGCCTG-CCGCTCCGCGCTTC ATTG GGGGCGCGGTTTGGGCAGG-GGCGGCA TGTTGGGAGCGAAGT TERM 907 1234180 - 1234201 + H 71 -11.5 -3.53012 | overlap 1234158 1234163 CCGCCGCCTGCCGCT CCGCGCTTC ATTG GGGGCGCGG TTTGGGCAGGGGCGG TERM 908 1234605 - 1234640 + G 91 -9.1 -4.82901 | gap 1, overlap 1234607 TCGCTGGGGCGGGGG CA-GTTGACGGTCGGC ATCCC GCCGATGGTCAACCTG TTTTTCTCGCCGGCG RALTA_B1180 1234326 - 1235231 + | putative regulatory protein, HTH LysR, substrate-binding RALTA_B1181 1235820 - 1235242 - | conserved hypothetical protein; putative exported protein thcB 1238430 - 1236091 - | Ferredoxin:Cytochrome P450:Oxidoreductase FAD/NAD(P)-binding:Oxidoreductase FAD-binding region TERM 909 1238501 - 1238470 - R 100 -15.9 -5.01732 | gap 1, opp_overlap 1238469 1238490 AAGCCTGGCAAAAAA CGCT-GCCGCCCGG GCGCG CCGGACGGCCAGCG GTGTTGCGGCCGGAC RALTA_B1183 1239506 - 1238517 - | conserved hypothetical protein; UPF0065; SIGNAL PEPTIDE PROTEIN TERM 910 1239525 - 1239545 + H 77 -3.9 -4.90471 | opp_overlap 1239527, overlap 1239527 GTCTCCTGAAGGATG AACCGGG ATCCTGG CCCGGTG TTTTCTGTTTTGCGT RALTA_B1184 1239684 - 1240514 + | putative TRANSCRIPTION REGULATOR PROTEIN, IclR family phnM 1241810 - 1240593 - | C-P (carbon-phosphorous) lyase component; membrane associated; metallo-dependent hydrolase domain phnL 1242563 - 1241838 - | phosphonate transport protein (ABC superfamily, atp_bind)/ C-P (carbon-phosphorous) lyase component; membrane associated phnK 1243345 - 1242569 - | phosphonate transport protein (ABC superfamily, atp_bind)/ C-P (carbon-phosphorous) lyase component; membrane associated phnJ 1244244 - 1243342 - | C-P (carbon-phosphorous) lyase component; membrane associated phnI 1245401 - 1244241 - | C-P (carbon-phosphorous) lyase component; putative membrane associated phnH 1246002 - 1245403 - | carbon-phosphorus lyase complex subunit phnG 1246525 - 1246022 - | C-P (carbon-phosphorous) lyase component; membrane associated phnF 1246701 - 1247435 + | transcriptional regulator, GntR family; putative regulator for phosphonate uptake and biodegradation system TERM 911 1247834 - 1247866 + G 100 -15.5 -4.4009 | overlap 1247808 1247837 CCGGCAGGCACCGTT CGACGCAGCGCTTGC GTT GCGCGCGCTGCGTGG TTTTGTCGCGTGGGG TERM 912 1247837 - 1247863 + G 80 -15.8 -3.18044 | overlap 1247808 1247834 GCAGGCACCGTTCGA CGCAGCGCTTGC GTT GCGCGCGCTGCG TGGTTTTGTCGCGTG RALTA_B1193 1247562 - 1248287 + | conserved hypothetical protein; DUF1045 TERM 913 1248781 - 1248731 - g 71 -10.9 -3.57462 | gap 1 GACGCGATTGCGAAA CGGCTGGCCCGCGCGCGGCA-GGC GTTC GCCGTGCCGCCCGGATGCCGGCTG GTCGAGATCGACAAC phnN 1248284 - 1248874 + | Phosphonates transport system accessory protein; putative Guanylate kinase (GMP kinase) phnO 1249338 - 1248877 - | Phosphonates transport system; putative Acetyltransferase; GCN5-related N-acetyltransferase domain phnE 1250156 - 1249344 - | Phosphonates transport system permease protein; membrane protein phnD 1251266 - 1250265 - | phosphonate transport protein, binding protein TERM 914 1250306 - 1250337 + g 75 -5.7 -4.48987 | gap 1, overlap 1250307 CAGCCTTGTCCAGCT CCGCCAGG-CGGCG CGACA CGTCGGCCAGGCGC TTTTCCTTGTCGGCG TERM 915 1250978 - 1250958 - G 74 -12.5 -3.67296 | opp_overlap 1250973 GATCACCGAGGCAAA GACCTCGCC GCT GGCGCGGTC CACCGCTTCCATGGC phnC 1252172 - 1251318 - | phosphonate transport protein, ABC superfamily, atp_binding component RALTA_B1199 1252185 - 1252364 + | hypothetical protein TERM 916 1252399 - 1252381 - g 75 -8.9 -4.11371 | opp_overlap 1252393 1252398 CAAGATTTTTCAAAA GGCAATG CCAGC CATTGCC GCCGCCGCGGCGCTG ampC 1252361 - 1253554 + | beta-lactamase/D-ala carboxypeptidase; penicillin resistance, penicillin-binding protein (PBP) RALTA_B1201 1253729 - 1254187 + | conserved hypothetical protein, putative exported protein, DUF305 domain TERM 917 1254574 - 1254592 + G 71 -2.3 -4.65895 | CATCGCCTATATCGG GCGCTCG CCGCA TGAGGGC TTTTTCACTGCCGAC TERM 918 1255051 - 1255030 - g 70 -13.1 -3.28791 | AGTCGGCGGCGAGAA CGTGGTGAA GGTG TTCACCACG GACGCCACGCCCACG RALTA_B1202 1254194 - 1255630 + | conserved hypothetical protein, putative exported protein, Nitrous oxide reductase N-terminal domain RALTA_B1203 1257693 - 1255654 - | hypothetical protein TERM 919 1258074 - 1258101 + H 76 -14.1 -3.19522 | AATCGATTTGTCGTG GCGGCGTGGGC ATTCCG GCCAACGCCGC TTCGGTGTTGCGTCG TERM 920 1258924 - 1258903 - g 70 -9.4 -3.85817 | gap 1, opp_overlap 1258902, overlap 1258904 ATCTCCCGCGAGAAA CTGCGGCGC CTGGC GCGCCGC-G TGGTGAGTTCGCAGG TERM 921 1259128 - 1259070 - g 74 -11 -3.79113 | gap 3, overlap 1259023 1259021 1259067 1259071 AGCGCTGCAGAAGAA CCCGGCG-CAGGAGCGCCCGCCATCGCGC GGCC ACGCGCC-GCAGGCGCTGCTGGCGC-AGG GGCTGGGCCGCCTGC TERM 922 1259128 - 1259071 - g 72 -14.8 -2.87146 | overlap 1259023 1259021 1259067 1259070 GCGCTGCAGAAGAAC CCGGCG-CAGGAGCGCCCGCCATCGCGC GGCC ACGCGCC-GCAGGCGCTGCTGGCGCAGG GGCTGGGCCGCCTGC TERM 923 1259649 - 1259620 - g 90 -17.9 -3.48593 | gap 1, opp_overlap 1259618 GAGCCCGCCACACAA GCCAGGACCCGCGC CGC GCGCAGG-CCTGGC CATCATTCCCCTGCA RALTA_B1204 1258204 - 1259682 + | putative sensor protein, ATP binding histine kinase, putative transmembrane RALTA_B1205 1259679 - 1260350 + | Response regulator protein; Response regulator receiver domain, HTH LuxR domain; higly similar to B. subtilis Transcriptional regulatory protein degU (Protease production enhancer protein) RALTA_B1206 1260575 - 1262023 + | putative pyridoxal-phosphate-dependent aminotransferase; also contains a Selenocysteine lyase domain RALTA_B1207 1262058 - 1262519 + | putative endonuclease; putative exported protein TERM 924 1262536 - 1262578 + F 79 -14.1 -3.53012 | gap 1, opp_overlap 1262536 GGGGTTGGGGAAGGA CGACGGCAGCGGGGTACGGT TTGG GCCG-GCCCCGCTGTTGGCG TTTGGGCGCCCCAAC TERM 925 1263134 - 1263163 + G 80 -16.5 -3.14344 | opp_overlap 1263129 CGCTACGACACGCCG GTGGTTGCCATCG AGCG CGATGGCGACCGC TTCGTCGCGGCCGTG RALTA_B1208 1262684 - 1264114 + | putative FAD dependent oxidoreductase; putative periplasmic protein TERM 926 1265306 - 1265274 - g 86 -13.4 -3.86015 | gap 1, opp_overlap 1265297 1265301 CATGCGGTGGAGAAA CGCCGC-CCGAACCC GATC GGGCTCGGCGCGGAG TGACCGGCCGCCCGC citB 1264170 - 1265309 + | Citrate utilization protein B TERM 927 1265405 - 1265427 + G 82 -6.2 -4.68655 | CCGTCGACTGATCCT GCGCGCCA CCTTGCT TGCCGCGC TTTGTTTTCCCCTTG TERM 928 1265577 - 1265555 - g 83 -14.9 -3.63515 | overlap 1265568 GCTGATCGCGAAGAA GCTGGCCGA CAATC TCGGCCAGC CGGTAGTCGTCGACA TERM 929 1265879 - 1265837 - g 71 -11.9 -3.61398 | opp_overlap 1265844, overlap 1265840 TGCGCTGGCGAAGAA GAAGCCCGGGGCCGTGGAC TACGC GTCCACCGGCGCAGGCTCC GCGTCCCATCTTGCC TERM 930 1265876 - 1265840 - g 73 -10 -3.9461 | opp_overlap 1265844, overlap 1265837 GCTGGCGAAGAAGAA GCCCGGGGCCGTGGAC TACGC GTCCACCGGCGCAGGC TCCGCGTCCCATCTT RALTA_B1210 1265385 - 1266365 + | conserved hypothetical protein; UPF0065; putative exported protein TERM 931 1266428 - 1266450 + T 78 -11.9 -3.72984 | AATCGCGGCGTTCAG GCGGGCCGC GGCAG GCGTCCCGC TTTCAATCCTTGTGC RALTA_B1211 1267379 - 1266453 - | putative transcriptional regulator, LysR family TERM 932 1266508 - 1266483 - G 70 -14.7 -2.70932 | gap 1, opp_overlap 1266498 CGTCGCGCCGAACCA CGCGCCGTCCCG CAC CAGG-CGGCGCG CGGTATCGGCCAGCA TERM 933 1267545 - 1267569 + r 100 -17.1 -3.75598 | overlap 1267547 TTGACGTGGAGGGTC TGCCCGCCCGG GAT CCGGGCGGGTG TTCTTGCCTTAGTTG TERM 934 1267547 - 1267567 + r 100 -19.7 -3.45087 | overlap 1267545 GACGTGGAGGGTCTG CCCGCCCGG GAT CCGGGCGGG TGTTCTTGCCTTAGT RALTA_B1212 1267778 - 1267578 - | hypothetical protein RALTA_B1213 1269110 - 1267797 - | hypothetical protein TERM 935 1269232 - 1269248 + H 75 -2.9 -4.9218 | opp_overlap 1269233, overlap 1269233 GGAAAACGCATAATA TTGATCG TTG CGTTCAG TTTTTCTGATAGCTA RALTA_B1214 1269263 - 1270129 + | putative transcriptional regulator, LysR family RALTA_B1215 1271419 - 1270178 - | putative D-amino-acid dehydrogenase RALTA_B1216 1271721 - 1273451 + | putative sulphate transporter; Sulfate transporter/antisigma-factor antagonist STAS domain RALTA_B1217 1274353 - 1273478 - | putative polyphosphate kinase TERM 936 1274574 - 1274537 - H 73 -11.2 -3.53811 | gap 1, overlap 1274538 TGGATCCGGCGGAAA GCGGGCAGGGCGCGCAG GCTGG CC-CGCGCCTTGCCCGG ACCATACGCCGGGGT TERM 937 1274573 - 1274538 - H 75 -14.7 -2.72144 | gap 1, overlap 1274537 GGATCCGGCGGAAAG CGGGCAGGGCGCGCAG GCTGG CC-CGCGCCTTGCCCG GACCATACGCCGGGG RALTA_B1218 1274620 - 1275648 + | hypothetical protein RALTA_B1219 1275685 - 1276239 + | conserved hypothetical protein; weak GCN5-related N-acetyltransferase domain RALTA_B1221 1276543 - 1277955 + | hypothetical protein RALTA_B1222 1278232 - 1278648 + | putative cyclase/dehydrase; putatively involved in polyketide (linear poly-beta-ketones) synthesis; antibiotic biosynthesis TERM 938 1278650 - 1278703 + F 73 -10.7 -3.56594 | overlap 1278696 AAGCCCAGGCATGAC GGCTTGCGTCCCGGTCGCGGACTGG CCTG CCAGATCGCGGCCGGATCCGGGGCC TTTCCCCGCCTTTCC RALTA_B1223 1278865 - 1279086 + | conserved hypothetical protein, mbtH-like lgrE 1279089 - 1279823 + | Linear gramicidin dehydrogenase, type II thioesterase TERM 939 1281299 - 1281319 + G 71 -10.3 -3.72576 | opp_overlap 1281269 1281283 CAGGTCCCCGCCGCG CGCCGCGGC CGG GTGGCGGCG TTTGCTGCCGACGGC TERM 940 1283047 - 1283071 + G 75 -8.5 -4.16016 | overlap 1283049 TCCCACGCCGGTGCA TGCGGCCAAGT TCG ACCTGGCCGTG TTTCTTGAGCCGTGC TERM 941 1283049 - 1283069 + G 74 -11.1 -3.67877 | overlap 1283047 CCACGCCGGTGCATG CGGCCAAGT TCG ACCTGGCCG TGTTTCTTGAGCCGT TERM 942 1283344 - 1283306 - g 81 -12.4 -3.89881 | gap 1 AGCAAGCTCGACAAA CTCGGCAAGCTCGCCAG CCTGCC CCGGCGCGC-CGCCGAG GCAACCCCTGCGGCG TERM 943 1283710 - 1283685 - g 72 -8.9 -3.9941 | gap 1, opp_overlap 1283693 1283696, overlap 1283681 TGTTCCACAACGAAA GCGCGCACCTGC CGC GCTGGC-CGCGC AAGCAGTGGTTCTTC RALTA_B1225 1279880 - 1284400 + | non ribosomal peptide synthase, antibiotic synthesis; contains 1 condensation domain, 1 AMP-acid ligases II domain, PP-binding, Phosphopantetheine attachment site and one taurine catabolism dioxygenase RALTA_B1226 1284405 - 1287584 + | non ribosomal peptide synthase, antibiotic synthesis; contains 1 condensation domain, 1 AMP-acid ligases II domain TERM 944 1287672 - 1287720 + G 80 -15.9 -3.12895 | opp_overlap 1287618, overlap 1287669 1287709 1287713 CTGCTGGAGCAGGAT GCGGAGCCGGCGGC-CGCGCCGG CCAGC CCCGCGCCCGCCG-CGGCGCCGC TGTCTTGCTCGCAGC TERM 945 1293219 - 1293251 + G 86 -19.1 -3.19668 | opp_overlap 1293217, overlap 1293247 CCGCTCTACGACATC CAGCGCTGGGCCGGC CAG GCCGGTCAGGCGCTG TTCGATTCGATCGTC RALTA_B1227 1287609 - 1295399 + | non ribosomal peptide synthase, antibiotic synthesis; contains 3 condensation domains, 2 AMP-acid ligases II domains, 2 PP-binding, Phosphopantetheine attachment site TERM 946 1295445 - 1295470 + G 72 -6.7 -4.37092 | gap 1, overlap 1295446 GCCGCGCGCTTTGCC ACGCTGGCGCCG GTC CAGCGCC-GCGC TTTTCTCGACAAGAT TERM 947 1299906 - 1299950 + G 73 -12.7 -3.53343 | TCCGTGGCTTATGCC CGCCGCCGTTATCGCAGCG CGACGAT CGAAGCGCTGGCGGCGGCG TTTCGCGCGGAACTT TERM 948 1301040 - 1301072 + G 86 -19.1 -3.19668 | opp_overlap 1301038, overlap 1301068 CCGCTCTACGACATC CAGCGCTGGGCCGGC CAG GCTGGCCAGGCGCTG TTCGATTCGATCGTC TERM 949 1302480 - 1302502 + G 72 -6.1 -4.37886 | overlap 1302444 1302462 CGCGGCTATCTCGGC CGCGCCGCG CTGAC CGCCGAGCG TTTTGTCGCCGATCC TERM 950 1302510 - 1302540 + G 70 -8.9 -3.85698 | gap 1 GCCGAGCGTTTTGTC GCCGATCCGCACGG CGCG CCGGGCG-AGCGGC TTTATCGCACCGGCG TERM 951 1304065 - 1304121 + G 85 -17.9 -3.13403 | gap 1, overlap 1304065 GCCGCGTGGCATTCG GCGCCACCGTC-GCGGGCCGCCCGGC CGACGT GCCGGGCAGCCAGCAGATGCTGGGGC TGTTCATCAACACGC TERM 952 1306872 - 1306848 - g 74 -13.6 -3.33696 | gap 1 CTGCCCGGCAAGGAA CCGC-TCGCGC TGCC GCGCGATGCGG CGCCCGAGCCCGACG RALTA_B1228 1295400 - 1307267 + | non ribosomal peptide synthase, antibiotic synthesis; contains 4 condensation domains, 3 AMP-acid ligases II domains, 3 PP-binding, Phosphopantetheine attachment site and a putative thioesterase domain fhuA2 1307357 - 1309573 + | TonB-dependent siderophore receptor, HYDROXAMATE-TYPE FERRISIDEROPHORE RECEPTOR precursor TERM 953 1309658 - 1309600 - f 88 -17.4 -3.05844 | gap 2, opp_overlap 1309606 CCTGGCATGCCAATA CCTGGCGACAGGCACGGCCCCGCCCCCG CAACC CGGGTGCGGGGCCGCGGCCTT-GC-AGG AGTTCCATCACATGA RALTA_B1230 1309652 - 1310830 + | conserved hypothetical protein; putative Membrane protein; DUF337,Uncharacterized iron-regulated membrane protein TERM 954 1310888 - 1310902 + GT 72 -3.4 -4.56597 | overlap 1310885 1310889 CGCTGTCGCTGGGCG GCCTGG CGG CCGGGA TTTTTGGCGACGGGG RALTA_B1232 1311754 - 1310963 - | putative reductase; Uncharacterized Fe-S protein RALTA_B1231 1310827 - 1311021 + | hypothetical protein; putative exported protein TERM 955 1313578 - 1313618 + G 83 -14.6 -3.54543 | opp_overlap 1313570, overlap 1313579 TGATCAACCGCGTGC TGGCGACGCAGGGCGCGG AGGCG CCGCGGCTGGCGTTGCCG TTTGCGGCGCTGGCT TERM 956 1313579 - 1313617 + G 74 -15.9 -2.72511 | opp_overlap 1313570, overlap 1313578 GATCAACCGCGTGCT GGCGACGCAGGGCGCGG AGGCG CCGCGGCTGGCGTTGCC GTTTGCGGCGCTGGC TERM 957 1313709 - 1313728 + G 78 -9.2 -4.36914 | GCGCTGGCGCGCATC CGCGCGCA GATC TGCGAGCG TTTTATCGGCGCGCC TERM 958 1314392 - 1314413 + G 82 -15.1 -3.44319 | opp_overlap 1314357 TCCCGAAGCGCCGCC CGGCGCCGC GCCT GTGGCGCCG TTCTCGTCGGTTACG yojI 1313460 - 1315100 + | ABC transporter ATP-binding protein, putative ABC-type siderophore export system RALTA_B1235 1315097 - 1316152 + | putative ESTERASE/LIPASE PROTEIN iucB 1316214 - 1317296 + | siderophore biosynthesis protein, putative acetyltransferase iucD 1317293 - 1318651 + | L-ornithine 5-monooxygenase(L-ornithine N5-oxygenase) L-lysine 6-monooxygenase ( Lysine N(6)-hydroxylase); Siderophore biosynthesis protein RALTA_B1238 1319403 - 1318615 - | 4'-phosphopantetheinyl transferase TERM 959 1319431 - 1319421 - H 76 -8.2 -4.11216 | overlap 1319422 GGCGGACTCGGAAAA GGCC TAA GGCC GCAGCACGCCGCCCT RALTA_B1239 1319583 - 1320161 + | RNA polymerase sigma factor RALTA_B1240 1320951 - 1320202 - | putative Carboxymethylenebutenolidase; Dienelactone hydrolase family TERM 960 1321097 - 1321054 - R 88 -16.6 -3.39327 | gap 1, overlap 1321087 CGCTCAGAGGTAGAA CGCCGGC-GCGCCGGCCGGGC GTT GCCCGAACGACGCCGCGAGCG GCGACGGCCCGACGC RALTA_B1241 1321854 - 1321042 - | hypothetical protein TERM 961 1321110 - 1321160 + g 74 -16.9 -2.79302 | gap 2, overlap 1321109 GCGGCGACGGCCCGA CGCGCGCATAGGCGCCCGGTGTCTG CGC CAGGCGCCGG-CGCC-ATGCGCGGA TCTGGTGGGCCTGGT TERM 962 1321946 - 1321968 + r 76 -9 -4.06419 | overlap 1321947 GGCGGGCGTGGGCTG CTTCGCCGGC GTA GCCGGCGACC TTCTTTCTGGCCGAG TERM 963 1321947 - 1321967 + r 71 -12.5 -3.0353 | overlap 1321946 GCGGGCGTGGGCTGC TTCGCCGGC GTA GCCGGCGAC CTTCTTTCTGGCCGA TERM 964 1322033 - 1322014 - R 100 -13.6 -5.11063 | opp_overlap 1322012 1322011 AGTACCCAATAAAAA CGGGCTTC CGAA GAAGCCCG CCCTTTCTGTCGCGA RALTA_B1242 1323406 - 1322084 - | putative transporter; Major facilitator superfamily MFS_1 TERM 965 1323990 - 1323968 - H 100 -11.3 -5.71712 | gap 1 GCCGACATAAAAAAA GCCCG-CAGG CGAA CCTGGCGGGC TGAGGCATGGTGCGT TERM 966 1325343 - 1325401 + G 86 -12.3 -4.19177 | gap 1, opp_overlap 1325356 1325357 1325359, overlap 1325345 1325364 TTGCCGCGGTGGCGG GCCTGATCGAGAACCAGGCGGCAAACCC GATC GTGGTGGCCGCCTGCGTCTCGTTC-GGC TTTGTCTTCGCGCAT RALTA_B1243 1324445 - 1325968 + | hypothetical protein RALTA_B1244 1336698 - 1325989 - | putative aspartate/glutamate/hydantoin racemase TERM 967 1326557 - 1326577 + g 86 -6.8 -4.8543 | gap 1, overlap 1326547 1326547 1326558 1326573 TCCACGGCGTCGGGA TCGGC-GGC CTTT GCCAGCCGG TTTTTCTCGGCATTG TERM 968 1334139 - 1334189 + g 84 -19.7 -2.88366 | overlap 1334131 1334139 1334142 CGCCCTGCGGCGCGG CCAGCGCGATGGCCTTGGACAGC CCCGT GTCGTCCGAGGCCTTCGCGCTGA GTTCTTCCTTGCGCA TERM 969 1334139 - 1334190 + g 100 -19.5 -3.81414 | gap 1, overlap 1334131 1334139 1334142 CGCCCTGCGGCGCGG C-CAGCGCGATGGCCTTGGACAGC CCCGT GTCGTCCGAGGCCTTCGCGCTGAG TTCTTCCTTGCGCAT TERM 970 1334142 - 1334186 + g 83 -20 -2.68886 | overlap 1334131 1334139 1334139 CCTGCGGCGCGGCCA GCGCGATGGCCTTGGACAGC CCCGT GTCGTCCGAGGCCTTCGCGC TGAGTTCTTCCTTGC TERM 971 1335924 - 1335936 + g 70 -3.3 -4.47707 | overlap 1335873 1335920 1335923 CCTGGTCGACCCTGG CGGCG GCC TGCTG TTCTTTTTCCTGCGC TERM 972 1336463 - 1336483 + g 79 -5.3 -4.76213 | overlap 1336455 1336466 GGCTTGTCGGGCTGG TCCGCGGGT CTG GCCTGCTGA TTTTGTTGGGTTTGT RALTA_B1245 1337836 - 1337033 - | conserved hypothetical protein, DUF1445 COG4336 RALTA_B1246 1338915 - 1337956 - | putative transcriptional regulator, LysR family RALTA_B1247 1339672 - 1339067 - | Conserved hypothetical protein; putative exported protein TERM 973 1339916 - 1339888 - H 73 -8.8 -4.09685 | gap 1 CGGCATCGGGGAAAA CCCGCGG-GCCGT GGCG ATGGCACCACGGG ACGGAACGGCGCTAG TERM 974 1340254 - 1340266 + G 81 -3.3 -4.93898 | opp_overlap 1340255, overlap 1340255 CAACGCCGAGACAGC ACCGT CGC ACGGC TTTTTCTCCTGGTAT TERM 975 1340406 - 1340421 + G 72 -6 -4.36914 | overlap 1340407 CCACCTGGGGCATCA GCCGCG CCGA CGCGGG TTTTATCGGCACCGC RALTA_B1248 1340189 - 1341502 + | putative muconolactone transporter; Major facilitator superfamily MFS_1 TERM 976 1341544 - 1341515 - f 72 -13.6 -2.8055 | gap 1, overlap 1341512 1341510 TAGGGCACAACATGA CAC-CGCCGCGGC CCGGC GCCGCGGCACGTG CAGACCACAATAACA TERM 977 1341562 - 1341590 + F 100 -5.8 -5.75342 | opp_overlap 1341561 1341564, overlap 1341564 GACCACAATAACAAT CACGGCAGCCCC ACGCC GGGCCTGCCCAG TTTTTTTTCCGACGG RALTA_B1249 1341815 - 1342816 + | putative transcriptional regulator, LuxR family sctU 1344001 - 1342967 - | SctU: non flagellar T3S system conserved inner membrane protein. flhB/hrpN/yscU/spaS family TERM 978 1343287 - 1343273 - G 74 -12.8 -3.61398 | opp_overlap 1343284, overlap 1343258 CGCGGCCTCGAAGAA CGCCGC GCG GCGGCG TCCTGCCATGATCGG sctT 1344843 - 1344028 - | SctT: non flagellar T3S system conserved inner membrane protein. fliR/mopE/spaR family. TERM 979 1344844 - 1344874 + r 70 -12.4 -3.18582 | CTGCATCTCAGGCAT GCCGCGCCGTGTGC CAG GCGCGGGCCGCGGC TTCGTCGATGGCCTC hrpD 1345336 - 1344836 - | HrpD protein TERM 980 1345231 - 1345268 + g 77 -15.5 -3.13403 | overlap 1345229 GCCGCAGCCCGGCCA TCACCTGCGCGCGCTGC TGCT GCAGCGCGCGCAGCGCA TCTTCCTGACGGCGC sctN 1346715 - 1345333 - | SctN: non flagellar T3S system conserved protein. ATPase alpha/beta chains family TERM 981 1345362 - 1345390 + g 79 -14.5 -3.28712 | CCGCAAGCGGTGCGG GCTCGCGCACGCG CAG CGCCTGCGCCAGC TTGTCGACGGCGCCG sctL 1347341 - 1346733 - | SctL: non flagellar T3S system conserved protein sctK 1348177 - 1347323 - | SctK: non flagellar T3S system conserved protein TERM 982 1347555 - 1347590 + g 77 -14.7 -3.14132 | gap 2 TCGGCCATCAGCCGG CC-GGCGCCG-GGCGGG TGCT CCCGCAGCGGCGCCAGG TTCATCGGCAGCGCC sctJ 1348962 - 1348174 - | SctJ: non flagellar T3S system conserved transmembrane lipoprotein. yscJ/FliF family. TERM 983 1348368 - 1348313 - G 75 -9.4 -4.13767 | gap 1, overlap 1348298 CGTCCGACCGCAAAA CCGGCCGCCGGCCCCGCCGTGCCCGCC TGC GGCGCGAACGGGCGCGCCT-CGACCAG CGACAGCGACACATT RALTA_B1257 1349444 - 1348968 - | hypothetical protein RALTA_B1258 1349736 - 1349506 - | hypothetical protein sctD 1350948 - 1349812 - | SctD: non flagellar T3S system transmembrane protein. sctC 1352690 - 1350948 - | SctC: non flagellar T3S system conserved protein. GSP D family TERM 984 1351788 - 1351812 + g 100 -17.2 -3.8211 | GGTATCGGCCTGGAA CTGGGGCAGC TGGCC GCTGCCCCAG TTGTTCTGCATGCCA sctS 1353010 - 1352744 - | SctS: non flagellar T3S system conserved transmembrane protein. Belongs to the fliQ/mopD/spaQ family. sctV 1355162 - 1353012 - | SctV: non flagellar T3S system conserved transmembrane protein. FHIPEP (flagella/HR/invasion proteins export pore) family. TERM 985 1353171 - 1353198 + g 74 -14 -3.29461 | opp_overlap 1353132, overlap 1353174 CACCACCACGCGTGC GGCGCCCGCCGC GCCC GCGGCGCCCGCC TTCTCGGCGGCCTTC TERM 986 1353719 - 1353692 - G 70 -14.8 -2.78384 | gap 1 CTTCCTCGCACGACA GCGTGCGCACGCC GTC GGCG-GCGCCCGC CTCGGCCGGCACCCA TERM 987 1354701 - 1354677 - G 71 -10.7 -3.61178 | gap 1 CGCATCCAGCGCAAA GCGCG-CGCC CACCTC GGCGACGCGC TCCGAGCCCTTGGCG TERM 988 1355086 - 1355040 - G 100 -22.4 -3.62096 | gap 1, opp_overlap 1355068 CGCGATCACGGCAAA CAGCAGCAGCGTCAGCGCCAG GTCTGA CTGGCGC-GACGCCGCCGCCG CCATCTGCTGCAGCC TERM 989 1355099 - 1355142 + g 74 -12.2 -3.54935 | gap 1, overlap 1355100 CCGCCATCTGCTGCA GC-CCCGGCGCGCCCGCGCCG AGG CTGCGCGGGAACGCTGGGAGG TTTGCCGGGAGTTTC TERM 990 1355100 - 1355141 + g 70 -15.7 -2.7264 | gap 1, overlap 1355099 CGCCATCTGCTGCAG C-CCCGGCGCGCCCGCGCCG AGG CTGCGCGGGAACGCTGGGAG GTTTGCCGGGAGTTT TERM 991 1355869 - 1355890 + G 71 -10.1 -3.75629 | TGGCGCCCGTGCGCA GGCATTGGC TGCG GCCCATGCC TTTGGCTTCGAGCTG sctQ 1355366 - 1356565 + | SctQ: non flagellar T3S system conserved protein. FliN/MopA/SpaO family. sctR 1356609 - 1357268 + | SctR: non flagellar T3S system inner membrane conserved protein. FliP/mopC/spaP family RALTA_B1265 1357801 - 1357283 - | GCN5-related N-acetyltransferase, Putative acetyltransferase RALTA_B1267 1358514 - 1357867 - | Putative transcriptional Regulator, TetR family TERM 992 1358459 - 1358479 + g 75 -5.4 -4.64861 | gap 1, overlap 1358447 1358461 GCGTGCGCGGCGGCA GC-GATGCG GTCA CGCGTCTGC TTTCTTTTACGGACA RALTA_B1266 1358584 - 1360059 + | putative amine oxydase, deshydrogenase; Phytoene dehydrogenase RALTA_B1268 1361586 - 1360276 - | putative sensor signal transduction histidine kinase RALTA_B1269 1362323 - 1361583 - | Response regulator in two-component regulatory system ompR family TERM 993 1361836 - 1361804 - G 72 -13.4 -3.13403 | gap 1, overlap 1361802 GGTGGTCGACGAAGA CGCGCAGCAGC-CGG TACT CCGCGCCGCTGAGCG CGACGATTACGTCCT TERM 994 1362406 - 1362348 - H 84 -3.7 -5.18866 | gap 2, opp_overlap 1362370 1362371 1362393, overlap 1362359 1362361 CGGAAACAAAGAAAA GAAGCAGAAAAGGCGCAGCGGCCGGCTGC GGC ACGGCAGGCCG-T-CGCCTGCCCTGGTGC CGCCATTATGGGGCG TERM 995 1362379 - 1362359 - H 86 -8.2 -4.65512 | opp_overlap 1362370 1362371, overlap 1362348 1362361 AAAAGAAGCAGAAAA GGCGCAGC GGCCG GCTGCGGC ACGGCAGGCCGTCGC TERM 996 1362370 - 1362411 + H 72 -12.1 -3.29511 | opp_overlap 1362361 1362359 1362348, overlap 1362371 1362393 AAAAGGCGCAGCGGC CGGCTGCGGCACGGCAGGC CGTC GCCTGCCCTGGTGCCGCCA TTATGGGGCGCTGGC TERM 997 1362371 - 1362410 + H 77 -15.6 -2.57564 | opp_overlap 1362361 1362359 1362348, overlap 1362370 1362393 AAAGGCGCAGCGGCC GGCTGCGGCACGGCAGGC CGTC GCCTGCCCTGGTGCCGCC ATTATGGGGCGCTGG dipZ2 1362560 - 1363273 + | Cytochrome c-type biogenesis protein TERM 998 1363564 - 1363538 - g 79 -10.8 -3.96892 | overlap 1363540 AAGTGGTACGACAAA TACCGCGACCAG GGC CTGGTCGTGGTG GGCGTCCACACGCCG TERM 999 1363562 - 1363540 - g 78 -13.4 -3.57406 | overlap 1363538 GTGGTACGACAAATA CCGCGACCAG GGC CTGGTCGTGG TGGGCGTCCACACGC RALTA_B1271 1363277 - 1363816 + | putative Thiol-disulfide oxidoreductase TERM 1000 1365401 - 1365375 - g 74 -13.6 -3.33696 | CCCGGCGGCAAGGAA GCCGCCGCCGAC GAA GCCGGCCACGGC ACGGTCGGCGAGGCG RALTA_B1272 1364091 - 1365422 + | putative transport protein (NCS2 family); Xanthine/uracil/vitamin C permease RALTA_B1273 1366025 - 1365450 - | putative metalloendopeptidase, M23 family TERM 1001 1366133 - 1366149 + H 71 -5.1 -4.4078 | opp_overlap 1366117 CATCGGCGCCGCGGC CGGTC ATAACGG GACCG TTTTCATTGCAACAG RALTA_B1274 1366173 - 1366481 + | hypothetical protein TERM 1002 1366521 - 1366504 - T 86 -12.7 -4.07526 | opp_overlap 1366504 AACGATTGAGAGAAA GGGCGAC CACG GTCGCCC TTTCCACGTTGACGT TERM 1003 1366504 - 1366521 + T 77 -12.7 -3.60971 | opp_overlap 1366504 AACGATTGAGAGAAA GGGCGAC CACG GTCGCCC TTTCCACGTTGACGT RALTA_B1275 1368157 - 1366541 - | Gamma-glutamyltranspeptidase TERM 1004 1367014 - 1366982 - G 86 -6.1 -4.88067 | opp_overlap 1366981, overlap 1366983 1367007 ATCGAGCGAGAAAAA CGCACCGCGGTTCTG CAG CAGCACACCGGTGCC CTTGGGCACGATGGC TERM 1005 1368010 - 1367999 - G 73 -7.2 -4.22652 | opp_overlap 1368007 GTAGATCAGCCAAAA GGCG TCGC CGCC GATGGAGTTCATGTG RALTA_B1276 1368527 - 1369324 + | putative Transcriptional Regulator, AraC family RALTA_B1277 1370990 - 1369335 - | hypothetical protein TERM 1006 1369447 - 1369419 - G 82 -5.8 -4.72272 | overlap 1369385 1369384 1369420 CTCGGCCACGAAAAA GGCCCGCTCCGC CGGGC GCAGCGCAGGCA ACTGCCCCGCAAGCC TERM 1007 1370070 - 1370025 - G 79 -14.5 -3.28924 | gap 1, opp_overlap 1370043 1370044 CAGCGCGCCCGAGAA CGCGTCCAGCGCGCGCTGCGCC GCC GTCGCTGCGCCCGCCTG-CGCG GGGCGCATGGCGTCG TERM 1008 1370688 - 1370637 - G 85 -17.3 -3.14132 | gap 2, overlap 1370590 1370591 1370673 CCCGTTGGCGACGAA GCGCAGCCG-GCG-CGCGCTGGCCG CGGC CAGCCAGAACGGCCCGCGGCTGCGC TGTGCCGGGTTGGCC TERM 1009 1371808 - 1371782 - g 82 -18 -3.05844 | opp_overlap 1371791, overlap 1371767 CCCTGCACGGCAAGA CCGGCTGGGCCA ACT CGGCCCAACCGG CGGTGGGCTGGCTGG RALTA_B1278 1371118 - 1371957 + | putative Beta-lactamase; putative exported protein RALTA_B1279 1373504 - 1372047 - | conserved hypothetical protein; putative exported protein TERM 1010 1373873 - 1373860 - R 82 -5.9 -4.90778 | overlap 1373862 GCCAGGCAAACAAAA GCCAC CTCC GCGGC GCCATGGCGTTCAGT RALTA_B1280 1374973 - 1374002 - | conserved hypothetical protein; putative exported protein, UPF0065 TERM 1011 1374852 - 1374820 - G 76 -13.3 -3.53444 | overlap 1374821 1374823 CCAGCTTCTGCGAAA TCAGCCGCGCCACCA CGT CGGTGGCGCCGCCGG GGGCGAACGGCACCA TERM 1012 1374851 - 1374821 - G 74 -16.8 -2.71924 | overlap 1374820 1374823 CAGCTTCTGCGAAAT CAGCCGCGCCACCA CGT CGGTGGCGCCGCCG GGGGCGAACGGCACC TERM 1013 1374849 - 1374823 - G 75 -15.8 -2.90496 | overlap 1374821 1374820 GCTTCTGCGAAATCA GCCGCGCCACCA CGT CGGTGGCGCCGC CGGGGGCGAACGGCA TERM 1014 1375042 - 1375055 + H 81 -3.9 -5.07652 | CCGGCCCTACCATTA TTCAT ATTT ATGAA TTTTATTTTACGCAC TERM 1015 1375483 - 1375465 - g 71 -3.1 -4.66987 | gap 1, overlap 1375468 CATACCCGAACAAAA CTACCGCA ATGC CGCGG-AG GTGTCCGAAGCCGTG RALTA_B1282 1375283 - 1375519 + | hypothetical protein RALTA_B1283 1375868 - 1375557 - | hypothetical protein TERM 1016 1375870 - 1375854 - G 73 -10.1 -3.86015 | CAGGTCCGTTACAAA CGGCGCT TGC AGCACCG GTCCAAGCGATAAAG TERM 1017 1376188 - 1376160 - R 100 -13 -5.04249 | overlap 1376161 TCCCCAAAAAACAAA GCGCCCGCCGGG GCTGA CCTGGCGGGCGG GGACGGTCTGAATGA TERM 1018 1376187 - 1376161 - R 91 -16.5 -3.61465 | overlap 1376160 CCCCAAAAAACAAAG CGCCCGCCGGG GCTGA CCTGGCGGGCG GGGACGGTCTGAATG RALTA_B1284 1377445 - 1376327 - | NADH:flavin oxidoreductase, Old Yellow Enzyme family dkgB 1378298 - 1377492 - | 2,5-diketo-D-gluconate reductase B TERM 1019 1378386 - 1378373 - R 71 -5.2 -4.50627 | GACTGATGAAATAAA CGCC CTTACT GGCG AAAAATATTTGATTT RALTA_B1286 1378756 - 1378433 - | hypothetical protein RALTA_B1287 1379990 - 1378788 - | putative transporter; MFS family TERM 1020 1379436 - 1379378 - G 70 -12.3 -3.38046 | overlap 1379376 1379381 CGGTCATGGCAAACA CCAGC-AGCAGGCGCGGCTGCGCCAGCAC GCG GAACTGGCGCAGCAGCGGC-GCGGGCTCG GCATGCGGCAGCCGG RALTA_B1288 1380094 - 1381029 + | putative transcriptional regulator, LysR family RALTA_B1289 1381945 - 1381037 - | putative transcriptional regulator, LysR family TERM 1021 1381381 - 1381325 - G 90 -16.7 -3.68351 | TCCGTAGGACGCAAA GAGCGCATCG-ATCTGCAGCCGCGAGT CGAGC ACGCGCGGATGC-GATACGAAGCGCTC CCCCGCCAGGTCCGG potD 1382132 - 1383166 + | Spermidine/putrescine-binding periplasmic protein; ABC transporter periplasmic substrate-binding protein potA 1383236 - 1384315 + | Spermidine/putrescine transport protein; ABC transporter ATP-binding protein TERM 1022 1384386 - 1384419 + G 74 -15.9 -2.80074 | overlap 1384355 1384382 1384407 AGGCCATTCGCCGGT GCAGCCCCGTGGCTG CTGT CGGCCCCGGCGCTGC TGCTGTTCTGCGCGA potB 1384308 - 1385231 + | Spermidine/putrescine transport protein; ABC transporter permease protein TERM 1023 1385469 - 1385516 + G 76 -14 -3.53012 | gap 1 GTCAGCGCCACCCTC GCGGTGGCGCTGGCGGTGCCCGC CGC GCTGGCGCTGGTC-CGCCACCGC TTTCCCGGCCGCGGC potC 1385244 - 1386038 + | Spermidine/putrescine transport system permease; protein ABC Transporter permease protein ooxB 1386051 - 1387187 + | Opine oxidase subunit B; FAD dependent oxidoreductase RALTA_B1295 1387177 - 1387533 + | Putative sarcosine oxidase alpha subunit; 2Fe-2S ferredoxin ooxA 1387526 - 1388905 + | Opine oxidase subunit A; pyridine nucleotide-disulphide oxidoreductase soxB 1388895 - 1390052 + | Sarcosine oxidase beta subunit, FAD dependent oxidoreductase RALTA_B1298 1390098 - 1390451 + | conserved hypothetical protein, putative endoribonuclease RALTA_B1299 1390604 - 1390485 - | hypothetical protein; putative exported protein RALTA_B1300 1391026 - 1390601 - | hypothetical protein RALTA_B1301 1392078 - 1391059 - | putative oxidoreductase, Aldo/keto reductase family TERM 1024 1391916 - 1391936 + g 81 -18.3 -2.82516 | opp_overlap 1391930 GGATCTCGGCCAGGC CCGCGCCGT AAA ACGGCGCGG TGTCGTAGTAGCGCA TERM 1025 1392836 - 1392856 + G 72 -6.7 -4.25283 | opp_overlap 1392812, overlap 1392811 GCATGACGCCTTCAT CGCGGCCTG CGC CAGGGCGGG TTTTACTCCCACCAT RALTA_B1302 1392204 - 1393130 + | putative transcriptional regulatory protein, LysR family RALTA_B1303 1393267 - 1396737 + | putative adenylate cyclase; with Tetratricopeptide TPR_4 motifs for protein-protein interaction TERM 1026 1397094 - 1397117 + G 71 -11 -3.54129 | gap 1, opp_overlap 1397080 ACCACGCATGCCGAG GTG-CCGGCCA GCC TGGCCGGACGC TTTACCGCCGATATC TERM 1027 1397196 - 1397177 - g 84 -16.4 -3.40403 | GCGTTTCCAGGACAA CGGCGCGC GCCT GCGCGCCG AACGCACCGACCTGG RALTA_B1304 1396773 - 1397369 + | hypothetical protein RALTA_B1305 1398381 - 1397350 - | putative esterase of the alpha-beta hydrolase superfamily, Patatin-like phospholipase domain TERM 1028 1397425 - 1397476 + g 74 -12.8 -3.54029 | gap 1 CTCCAGCCATAGCGT CGCCGCCTGGCGG-CCCTGGTCGCG CAG CGCGCACAGGAACTCCCAGTCGGCG TTGTACTTGGTCGAG TERM 1029 1398480 - 1398509 + r 80 -14.2 -3.14132 | CATGACCCACACTGC CGCGGCGGCTGC GTCATG GCGGCCTCCGCG TTCGTGGCAGCAGGA iorB1 1400692 - 1398548 - | Isoquinoline 1-oxidoreductase beta subunit precursor; putative membrane bound protein iorA1 1401246 - 1400689 - | ISOQUINOLINE 1-OXIDOREDUCTASE (ALPHA SUBUNIT) OXIDOREDUCTASE PROTEIN RALTA_B1308 1401298 - 1402185 + | putative transcriptional regulator, LysR family TERM 1030 1402289 - 1402317 + F 77 -13.8 -3.33171 | opp_overlap 1402278 1402284 1402287 AGGAGGCAAAGAGCG CGTCGCCTGGGC GGCTG GCCAAGGCGGCG TTGGTGGTTCTTGCG TERM 1031 1402541 - 1402570 + F 74 -9.9 -3.75015 | opp_overlap 1402566, overlap 1402526 1402561 1402564 TCGCTGCGCTCGCAC CGCGCTGTCGCGC GCGA GCGCAACAGGGTG TTTCATCCCGCTTGT TERM 1032 1403002 - 1403047 + G 75 -10.5 -3.9693 | gap 1, overlap 1403016 CGGCAGTTTCACCAG CGGTTGTCTGCAA-CGCTCGAT GGC ATCGAGCATTTGCATGCGGCCG TTATTTACGTGAATG RALTA_B1309 1402921 - 1403979 + | prophage-derived bactoprenol glucosyl transferase RALTA_B1310 1404526 - 1405689 + | hypothetical protein; putative membrane protein RALTA_B1311 1407210 - 1405720 - | conserved hypothetical protein, DUF1485 TERM 1033 1406684 - 1406726 + g 74 -11.8 -3.78022 | opp_overlap 1406694, overlap 1406667 ACCGGGCGCACGCGC CCGGCAATCATGTCGAGCAG CAG CCGCCCGGCATGGGCGCCGG TTTCATACATGTCCA RALTA_B1312 1408504 - 1407230 - | Amidase, hydantoinase/carbamoylase, N-carbamoyl-L-amino-acid hydrolase RALTA_B1313 1409268 - 1408564 - | high-affinity branched-chain amino acid transport protein (ABC superfamily, atp_bind) RALTA_B1314 1410041 - 1409265 - | high-affinity branched-chain amino acid transport protein (ABC superfamily, atp_bind) TERM 1034 1409811 - 1409864 + g 84 -15.9 -3.40073 | CTGCACGCGCTGGTA GTCGGCTTCGGCCGTGACGTCCTTG CCGT CGAAGACGATGCGGCCGGCGCTGAC TTCCTTGGTGCCGGT RALTA_B1315 1411036 - 1410038 - | Branched-chain amino acid inner-membrane translocator RALTA_B1316 1411890 - 1411033 - | Branched-chain amino acid inner-membrane translocator RALTA_B1317 1413202 - 1412000 - | Branched-chain amino acid ABC transporter, periplasmic amino acid-binding protein TERM 1035 1412399 - 1412383 - G 70 -3.6 -4.41348 | GCGCGCCGAAATAAA CGCCCT CGCAC AGGTCG GCGCCGAGCGACTCG RALTA_B1318 1413631 - 1414455 + | Regulatory protein, GntR RALTA_B1319 1415698 - 1414484 - | AMINO TRANSFERASE PROTEIN RALTA_B1320 1416734 - 1415712 - | hypothetical protein TERM 1036 1415900 - 1415883 - G 70 -8.3 -3.85698 | overlap 1415884 GTCCGCGCCGACAAA GGCCCGG CGCA CCGGGTC GGCGCGAAAGGCGGT RALTA_B1321 1417780 - 1416788 - | conserved hypothetical protein, UPF0065 TERM 1037 1418059 - 1418046 - g 71 -9.5 -3.68351 | TGTTCATCACGGAAA GCGCG GTCT CGCGC CAGATTGCCTCGCTC TERM 1038 1418633 - 1418668 + G 77 -15.4 -3.21099 | gap 1 ATGGTCATCGCCGCG GCGCGG-GCCGGCCTGG GTA TCGGGCTGGTGCCGCGC TTCCTGGTCGAGGAG RALTA_B1322 1417943 - 1418884 + | putative transcriptional regulator, LysR family RALTA_B1323 1419796 - 1418897 - | putative transcriptional regulator, LysR family TERM 1039 1419920 - 1419907 - H 83 -9.5 -4.36914 | overlap 1419909 CTTGCCTGCAGAAAA CGGCC GCTC GGCCG CACTGACCCAGGAGA TERM 1040 1420177 - 1420160 - g 75 -9.8 -4.07568 | CGTGGTGGTGGAAAA CCGCCC CGGCGC GGGCGG GCATATCGGCGGCAA RALTA_B1324 1419942 - 1420931 + | conserved hypothetical protein, UPF0065 RALTA_B1325 1420978 - 1422267 + | hypothetical protein RALTA_B1326 1422841 - 1422290 - | Transcriptional regulator, MarR family TERM 1041 1422536 - 1422556 + g 74 -13.9 -3.34398 | opp_overlap 1422530 1422531, overlap 1422535 CAGCGTAAAGGCCGC CGCGCGCCG GTC CTGCGCGCG TGTTTCCCGACGCAC RALTA_B1327 1422938 - 1423915 + | conserved hypothetical protein; putative exported protein; UPF0065 betC 1423983 - 1425551 + | Choline-sulfatase TERM 1042 1425785 - 1425814 + G 78 -6.3 -4.65895 | TGAAGAACATCTGGA TCATGGTGGCGGA CGAG TCCGTCGCCCGGA TTTTTGCCTCGCACG RALTA_B1329 1425769 - 1426293 + | hypothetical protein RALTA_B1330 1426321 - 1426692 + | hypothetical protein RALTA_B1331 1427587 - 1426877 - | putative transcriptional regulator, GntR:UbiC family TERM 1043 1427546 - 1427556 + g 72 -6.8 -4.24623 | overlap 1427537 GCTGGCGATCCGCTG GCGA ATC TCGC TTTCTATCTCTTTGA RALTA_B1332 1427772 - 1429442 + | FAD flavoprotein oxidoreductase; similar to E. coli betA Choline dehydrogenase tauD4 1429481 - 1430392 + | taurine dioxygenase, 2-oxoglutarate-dependent TERM 1044 1431498 - 1431445 - g 100 -26 -3.18264 | gap 2, opp_overlap 1431445 1431487 GTCGGCATCGAGGAA GGCGCGCGCCTGGCCGCC--GGCGGC GCTG GCCGCCCTGACGGCCTGGCGCGCGGC TTCTATGCCCGCCCC TERM 1045 1431445 - 1431498 + G 100 -25.2 -3.48276 | gap 1, opp_overlap 1431445, overlap 1431487 GTCGGCATCGAGGAA GGCGCGCGCCTGGCCGCCGGCGGCG CTGGC CGCC-CTGACGGCCTGGCGCGCGGC TTCTATGCCCGCCCC TERM 1046 1431753 - 1431726 - g 85 -17.8 -3.14881 | CAACGTGCGCATCAA CGGCGCGATGAT GGAT ATCACCGCGCCG TTCGGCGGCTACAAG RALTA_B1334 1430422 - 1431843 + | NAD+-dependent betaine aldehyde dehydrogenase; similar to E.coli betB TERM 1047 1431863 - 1431904 + F 100 -24.5 -3.53224 | gap 1, opp_overlap 1431831, overlap 1431865 1431867 1431890 GCTCCGGCCCGGCCA CG-CACCGCCCGGCTGCCAG CCC CTGGCGGCCGGGCGGTGTCC TTTGCACGGCGCATG TERM 1048 1431865 - 1431901 + F 100 -31.7 -2.90496 | overlap 1431863 1431867 1431890 TCCGGCCCGGCCACG CACCGCCCGGCTGCCAG CCC CTGGCGGCCGGGCGGTG TCCTTTGCACGGCGC TERM 1049 1431867 - 1431899 + F 100 -28.5 -3.00525 | overlap 1431865 1431863 1431890 CGGCCCGGCCACGCA CCGCCCGGCTGCCAG CCC CTGGCGGCCGGGCGG TGTCCTTTGCACGGC TERM 1050 1432615 - 1432635 + G 82 -11.1 -4.11216 | opp_overlap 1432607 1432613, overlap 1432616 ACATCAACAACATGC TGCTGGCCG GCT CGGTCAGCG TTTTCACCATGGCCG RALTA_B1335 1432035 - 1433243 + | conserved hypothetical protein; putative membrane protein (DUF20, UPF0118) RALTA_B1336 1433351 - 1433566 + | hypothetical protein RALTA_B1337 1433647 - 1433859 + | hypothetical protein gabD4 1433907 - 1435379 + | succinate-semialdehyde dehydrogenase I, NADP-dependent RALTA_B1339 1436236 - 1435391 - | hypothetical protein RALTA_B1340 1436617 - 1436264 - | Transcriptional activator, similar to flhD TERM 1051 1436455 - 1436486 + g 100 -17.3 -4.09685 | GGCCCACCTCGCGGC CGAGGCCGAGCCG GAACAG CGCCTCGGCCTCG TTTTCGCGCATCAGC RALTA_B1341 1437395 - 1436619 - | putative transcriptional regulator, CAP CRP domains TERM 1052 1436890 - 1436874 - G 72 -5.7 -4.30576 | overlap 1436875 1436876 GGCGGACGACGAAAA GCCGCGC AGC GCGAAGC CGTCCGCGAGCCACA RALTA_B1342 1437659 - 1439674 + | two-component regulatory system protein; signal transduction histidine kinase ATPase RALTA_B1343 1439788 - 1440768 + | conserved hypothetical protein; UPF0065 TERM 1053 1440862 - 1440813 - T 76 -12.9 -3.53012 | gap 3, opp_overlap 1440826, overlap 1440824 GCCCGGCGCGCCAAA GCGCCACGACAGCCGCGCCGCCGC CTGCC GCACCAGCGCGGC-G--GTGGCGC CTTCGGTGCCGCTGT RALTA_B1344 1441619 - 1440789 - | putative TRANSCRIPTION REGULATOR PROTEIN, iclR domain RALTA_B1345 1442443 - 1441616 - | putative TRANSCRIPTION REGULATOR PROTEIN, iclR domain RALTA_B1346 1442762 - 1443721 + | putative Metallo-hydrolase/oxidoreductase, Beta-lactamase RALTA_B1347 1443782 - 1445524 + | putative monooxygenase, FAD-binding:FAD dependent oxidoreductase RALTA_B1348 1445561 - 1445785 + | hypothetical protein TERM 1054 1446710 - 1446750 + G 72 -6.9 -4.31166 | gap 2, overlap 1446711 ATTCGCTGCACGCGC TGCGA-CAGGTGC-TGCGC AACCC GCGCGTGTACCTGTTCGCC TTTATCTATTTCTCG RALTA_B1349 1445938 - 1447296 + | putative PERMEASE TRANSMEMBRANE PROTEIN TERM 1055 1447347 - 1447329 - T 80 -16 -2.57067 | opp_overlap 1447336, overlap 1447325 1447320 TCAATACGGAATGGA CCGCACCC GCC GGGTGCGG CGTTCAGTGGGATCG RALTA_B1350 1447659 - 1447351 - | hypothetical protein RALTA_B1351 1447835 - 1448056 + | hypothetical protein TERM 1056 1449195 - 1449168 - g 78 -13.4 -3.54408 | gap 1, overlap 1449164 GCCCATGGAAATCAA GCGGGTCCGGCCG GCG CGGCCGGA-CAGC TACGAGCACTTGTTC RALTA_B1352 1448116 - 1449489 + | erythromycin esterase; putative exported protein RALTA_B1353 1449970 - 1449653 - | hypothetical protein, putative exported protein RALTA_B1354 1450269 - 1450060 - | hypothetical protein RALTA_B1355 1450861 - 1450355 - | conserved hypothetical protein; Putative phospholipid-binding domain (BON) RALTA_B1356 1452112 - 1450985 - | conserved hypothetical protein; flavodoxin domain TERM 1057 1452217 - 1452235 + H 83 -11.6 -4.07687 | opp_overlap 1452188 ACGCGCAAGGTGTGC GCCGCGCG CGT CGCGCAGC TTTTACAGGCGCGGT TERM 1058 1452237 - 1452267 + H 74 -4.7 -4.58685 | gap 1, overlap 1452239 1452241 GCGCGTCGCGCAGCT TTTACAGGC-GCGG TCCG CCGCTGCATGTACA TTTTTCCCCGCATTT TERM 1059 1453004 - 1452951 - g 80 -16 -3.23216 | gap 3, overlap 1452952 TGCCATTACCACGAA CTGGCGCG-CAGCGG-GCAAGGCCGCG CGC CGCGCCCCTGAACCGCCGGCGCGCC-G AAACGGCATGCCGGC TERM 1060 1453004 - 1452952 - g 73 -16.2 -2.53715 | gap 2, overlap 1452951 GCCATTACCACGAAC TGGCGCG-CAGCGG-GCAAGGCCGCG CGC CGCGCCCCTGAACCGCCGGCGCGCCG AAACGGCATGCCGGC RALTA_B1358 1452423 - 1452989 + | conserved hypothetical protein; CinA C-terminal domain RALTA_B1360 1453071 - 1453415 + | hypothetical protein RALTA_B1361 1454135 - 1453518 - | hypothetical protein RALTA_B1362 1454611 - 1454159 - | conserved hypothetical protein; putative exported protein RALTA_B1363 1455022 - 1454648 - | hypothetical protein TERM 1061 1455121 - 1455136 + H 71 -8.2 -3.96216 | TCAACTTGCCGACGG CGCGCG GCCC TGCGCG TTATTTCCATCGGCA TERM 1062 1455292 - 1455323 + H 100 -7.3 -5.5112 | gap 3, opp_overlap 1455287 1455291 GCATGGCAAAGCCAT CCCGGCGGCCGGCCGC AAG GCG-CCG-CT-CCGGG TTTTTTGTTGCTCCG TERM 1063 1456676 - 1456655 - g 78 -12.9 -3.73775 | CGCACGGCCACGAAA CCCTGGCCG TCAC CGGCCTGGG CAGCGTGGTGGCGGC glgE 1455364 - 1458804 + | glycosidase hydrolase, weak Alpha amylase catalytic region domain TreS 1458814 - 1462179 + | Trehalose synthase, Maltose alpha-D-glucosyltransferase; Alpha amylase, catalytic subdomain TERM 1064 1463185 - 1463216 + G 81 -12.9 -3.86346 | TGTATGCGCCCACCG CGCGGCTGGGGCC GCCGCA GGCCTTTGCCGCG TTTATCGACCGCTGC glgB 1462176 - 1464464 + | 1,4-alpha-glucan branching enzyme glgX 1464461 - 1466656 + | glycosyl hydrolase malQ 1466653 - 1468896 + | 4-alpha-glucanotransferase (amylomaltase) TERM 1065 1471248 - 1471274 + G 83 -5 -4.82901 | overlap 1471273 AATCCGCAATTGCGC GCCGTGATCGAC CTG GTCCAGCAGGGC TTTTTCTCGCGCGGC TERM 1066 1471445 - 1471459 + G 84 -7 -4.72272 | GTCGGTGCTGTCGTG CGCGCG CTC CGGGCG TTTTTCATCGGACCG glgP 1469037 - 1471577 + | glycogen phosphorylase treZ 1471785 - 1473806 + | glycosidase hydrolase, similar to treZ, Malto-oligosyltrehalose trehalohydrolase, weak Alpha amylase catalytic subdomain treY 1473803 - 1476466 + | transglycosidase, similar to treY(Arthrobacter) Maltooligosyl trehalose synthase, weak Alpha amylase catalytic subdomain RALTA_B1372 1477043 - 1476477 - | conserved hypothetical protein; putative exported protein TERM 1067 1477113 - 1477166 + H 95 -11.1 -4.58685 | gap 4, overlap 1477113 1477114 CGGCCGCAAGCTGCG CCG-CG-GCGGGAAG-GCCGGCGATGC GGGT GC-TCGCCGGCACTTGCCGCACGCCAG TTTTTGCCAGCATTT TERM 1068 1477114 - 1477164 + H 74 -14.8 -2.60211 | gap 3, overlap 1477113 1477113 GGCCGCAAGCTGCGC CGCG-GCGGGAAG-GCCGGCGATGC GGGT GC-TCGCCGGCACTTGCCGCACGCC AGTTTTTGCCAGCAT TERM 1069 1477365 - 1477329 - H 100 -12.1 -4.57073 | overlap 1477332 1477333 CAGCGCCTGTAAAAA CTACGGCGCACGCGGCG CCA CGCCGCGCCGGCGGCAG CGCAGCATGGCGCAC TERM 1070 1477361 - 1477332 - H 76 -13.5 -3.23708 | gap 1, overlap 1477329 1477333 CGCCTGTAAAAACTA CGGCGCACGCGGCG CCA CGCCGCGC-CGGCG GCAGCGCAGCATGGC RALTA_B1373 1477515 - 1477886 + | conserved hypothetical protein; putative phospholipid-binding: alpha/beta predicted fold BON domain RALTA_B1374 1477932 - 1478165 + | hypothetical protein TERM 1071 1478604 - 1478581 - g 82 -14.6 -3.39784 | gap 1, overlap 1478579 CGAGCGCGAAGAACA TCCG-CCGCGG CCA CCGCGGACGGA ATAGCAAGGCGCCCC RALTA_B1375 1478210 - 1478608 + | hypothetical protein TERM 1072 1478634 - 1478665 + T 100 -23.8 -2.70932 | opp_overlap 1478613, overlap 1478638 CGGACACCGTCATCG CCAGGGCGGCTCCG GACG CGGAGCCGCCTTGG TCATTCGGAGGCCAG TERM 1073 1478638 - 1478661 + T 95 -19.6 -3.27298 | opp_overlap 1478613, overlap 1478634 CACCGTCATCGCCAG GGCGGCTCCG GACG CGGAGCCGCC TTGGTCATTCGGAGG RALTA_B1376 1479364 - 1478666 - | conserved hypothetical protein; putative phospholipid-binding: alpha/beta predicted fold BON domain RALTA_B1377 1480232 - 1479351 - | putative endonuclease/exonuclease/phosphatase RALTA_B1378 1480576 - 1480274 - | hypothetical protein uvrA2 1486608 - 1480747 - | Excinuclease ABC, A subunit TERM 1074 1485810 - 1485799 - G 75 -5.8 -4.42238 | CGAGTTGAAGGAAAA CAGC GCGG GCTG CGGGTCGGCATAGCG RALTA_B1381 1486882 - 1487652 + | putative transcription regulator, AraC family RALTA_B1382 1488155 - 1487670 - | conserved hypothetical protein, YjgF domain RALTA_B1383 1489018 - 1488152 - | putative isomerase, Phenazine biosynthesis PhzC/PhzF domain RALTA_B1384 1489994 - 1489011 - | conserved hypothetical protein; UPF0065 TERM 1075 1490146 - 1490163 + r 71 -9.1 -3.73775 | CGGACGGCATGGACG CCGGTCG CGCT TGACCGG TTTCGTCAGCCTCAC dppD 1491935 - 1490193 - | dipeptide ABC transporter atp_binding domain TERM 1076 1490973 - 1490945 - G 73 -7.4 -4.21922 | gap 2 CTATGGAAAACGAAA CGCCC-TGC-ACGG CAA CCGTAGCGTGGGCG CCGGACCGGTGGGTC RALTA_B1386 1492500 - 1491952 - | hypothetical protein dppC1 1493404 - 1492547 - | dipeptide transport protein 2 (ABC superfamily, membrane) dppB1 1494480 - 1493509 - | dipeptide transport protein 1 (ABC superfamily, membrane) dppA1 1496301 - 1494550 - | dipeptide ABC transporter, substrate binding protein precursor TERM 1077 1496992 - 1497038 + G 78 -14.2 -3.61398 | opp_overlap 1496980 1496976 1496975 ACACCGTGCAGAGCC CCGCGCTGCGCGAGCGTATCCG GCT CGCGGCCGATCGCGCAGCGCCG TTGTTCGCGGCGCAC msuE 1496517 - 1497080 + | FMN reductase TERM 1078 1497439 - 1497421 - g 71 -11.6 -3.57144 | overlap 1497422 GGCTGCATGCCGAAA TCGCGCCG TCA CGGCGCGC GCCGTGGCTCCGGCT TERM 1079 1497438 - 1497422 - g 70 -15.1 -2.74144 | overlap 1497421 GCTGCATGCCGAAAT CGCGCCG TCA CGGCGCG CGCCGTGGCTCCGGC RALTA_B1391 1497099 - 1498337 + | Acyl-CoA dehydrogenase, putative DBT sulfur dioxygenase TERM 1080 1498347 - 1498398 + F 83 -17.4 -2.57931 | gap 1, opp_overlap 1498343 1498392, overlap 1498347 GCCTGACAAAGCGCG CCCCCAATGTTTGCTCCCTC-CCGC TTG GCGCAGAGGGGGAAAACATTGGTGG GTTCTACGCCATCAA TERM 1081 1498347 - 1498399 + F 91 -17.2 -3.30124 | gap 2, opp_overlap 1498343 1498392, overlap 1498347 GCCTGACAAAGCGCG CCC-CCAATGTTTGCTCCCTC-CCGC TTG GCGCAGAGGGGGAAAACATTGGTGGG TTCTACGCCATCAAC TERM 1082 1499054 - 1499097 + G 85 -10.9 -4.25104 | gap 1 TCGACGGCACCACGC GCCTGCGTCGCAC-GGCGCA TGGGC TGCGCCTGAGCGGCACACGC TTTTACTCCACCGGC RALTA_B1392 1498564 - 1499832 + | Acyl-CoA dehydrogenase, putative DBT sulfur dioxygenase RALTA_B1393 1499834 - 1501084 + | Acyl-CoA dehydrogenase, putative DBT sulfur dioxygenase RALTA_B1394 1501084 - 1502451 + | Dibenzothiophene desulfurization enzyme A metQ3 1502464 - 1503315 + | D-methionine binding lipoprotein, ABC-type metal ion transport system metN2 1503350 - 1504471 + | methionine transport protein, ABC transporter, ATP-binding subunit (putative precursor) TERM 1083 1504726 - 1504757 + G 70 -9.4 -3.91488 | gap 1 TCGGCGTCTGGGCCG CGGTGGTGCCGCTGG CCG TCAGCGCCA-CGCCG TTCTTTGCACGCATT metI2 1504452 - 1505105 + | methionine transport protein, ABC transport, inner membrane component RALTA_B1398 1505705 - 1505178 - | conserved hypothetical protein, putative exported protein TERM 1084 1505378 - 1505395 + g 75 -5.5 -4.57569 | overlap 1505379 1505380 GGTCAATGACCGTAC TTTCGCC TTCC GGCGAGG TTTTTACCACGGTCA RALTA_B1399 1505908 - 1505741 - | hypothetical protein RALTA_B1400 1506347 - 1506676 + | hypothetical protein TERM 1085 1507090 - 1507069 - g 71 -3 -4.59109 | GAGACGCCCGAAAAA GCGAAG GAAGAACTAT CTTCGC TGAGCTACACCGGTG RALTA_B1401 1506673 - 1507131 + | conserved hypothetical protein, putative exported protein TERM 1086 1507142 - 1507168 + T 82 -10.8 -4.0825 | opp_overlap 1507133 1507132, overlap 1507143 AGTAAGGTCCAGCCC CGCCGGAGGC GGAACGA GCCTCCGGCA TTCTTTCCTTCCGCA TERM 1087 1507143 - 1507167 + T 78 -14.3 -3.04468 | opp_overlap 1507133 1507132, overlap 1507142 GTAAGGTCCAGCCCC GCCGGAGGC GGAACGA GCCTCCGGC ATTCTTTCCTTCCGC RALTA_B1402 1508393 - 1507395 - | putative hydrolase or acyltransferase TERM 1088 1509208 - 1509184 - g 70 -4.1 -4.42238 | CCAGGTCAACGAAAA GCATCGACGGC GTA GCCGAATATGC CCGCGTTGTGAGACG RALTA_B1403 1508927 - 1509448 + | conserved hypothetical protein, putative Glutathione-dependent formaldehyde-activating (GFA) RALTA_B1404 1510689 - 1509622 - | putative transcriptional regulator, lacI family RALTA_B1405 1511673 - 1510738 - | conserved hypothetical protein, UPF0065 TERM 1089 1511463 - 1511512 + g 79 -15.5 -3.30124 | gap 1 TGTAGCCATCCGGCG CCGCCTTGGCAACGCCGGTCGCGC CGA GCGTG-CCGCCGGCGCCCGGGCGG TTGTCGACGATCACC RALTA_B1406 1512858 - 1511764 - | outer membrane porin TERM 1090 1511988 - 1511971 - G 81 -7.7 -4.56597 | gap 1, overlap 1511972 1511973 GCCGCTGCGGAAAAA GCCCACCG TCT CGGTGG-C GTCGCCTGCGCCATT TERM 1091 1513004 - 1512992 - R 78 -3.3 -5.04987 | overlap 1512982 AATAGCGCCAAAAAA TCAGC CTG GCGGA AACGGCATCGCCAGC RALTA_B1407 1513333 - 1512992 - | hypothetical protein RALTA_B1408 1514307 - 1513330 - | putative NADP-dependent quinone oxidoreductase (Zinc-containing alcohol dehydrogenase superfamily) TERM 1092 1513612 - 1513594 - G 72 -8.8 -4.0371 | opp_overlap 1513605, overlap 1513597 GATGGTCGAGATAAA GATCTGCG TGG CGCCGATC GCCATGCTGCGGTTG RALTA_B1409 1515232 - 1514348 - | conserved hypothetical protein, DUF849 RALTA_B1411 1516020 - 1515271 - | putative Short-chain dehydrogenase/reductase (SDR) TERM 1093 1515859 - 1515889 + g 70 -12.4 -3.31144 | GGCCAGGTGGTTGCC GGCCGGCAGCGCGG CCG CGGCGCTGGCCGCC TTGTCGGCATCGCGG RALTA_B1412 1517000 - 1516062 - | hydroxyquinol 1,2-dioxygenase nylB1 1518666 - 1517290 - | 6-AMINOHEXANOATE-DIMER HYDROLASE LIPOPROTEIN TERM 1094 1517554 - 1517508 - G 78 -16.6 -3.02511 | gap 2, opp_overlap 1517537, overlap 1517533 1517535 TCCAGCCCGGCAACA CCGCGGC-GCTGCCG-GACCTG GCAAA CAGCTCGCGGCTGCCGCCGCGG CGGATGTCGGCCACG RALTA_B1414 1519134 - 1518697 - | putative transcriptional repressor MarR ribA 1519971 - 1519375 - | GTP cyclohydrolase II TERM 1095 1519711 - 1519735 + g 86 -12.2 -4.18197 | gap 1, opp_overlap 1519710, overlap 1519713 ACGCAGGTACAGCAG GAT-GCCGCGG CCCT CCGCGGCGATC TTTTCCATGGCGAGT TERM 1096 1520016 - 1519992 - H 73 -8.4 -4.08064 | opp_overlap 1519992 AATTCTTGGTCAAAA GGCGGGGGCG CAGCC CGGCACCGCC GACATTATGAGCGGA TERM 1097 1520219 - 1520162 - H 79 -13.4 -3.46602 | gap 3, overlap 1520159 1520163 CGGTTTACAGGACAA GGGCCGTCCCCG-GCGGGCAGG-ATTGCG ATG CGCAGCGCCCG-CCGCTCGGGTACGGCCG CAGCAGGAGTCGCCA TERM 1098 1520218 - 1520163 - H 83 -16.9 -2.67747 | gap 3, overlap 1520159 1520162 GGTTTACAGGACAAG GGCCGTCCCCG-GCGGGCAGG-ATTGCG ATG CGCAGCGCCCG-CCGCTCGGGTACGGCC GCAGCAGGAGTCGCC RALTA_B1416 1520234 - 1520764 + | hypothetical protein lrp2 1521235 - 1520765 - | transcriptional regulator, AsnC/Lrp family (Leucine-responsive regulatory protein) RALTA_B1418 1521415 - 1521729 + | hypothetical protein metR 1522666 - 1521743 - | transcriptional regulator of methionine biosynthesis (LysR family) TERM 1099 1522968 - 1522982 + G 74 -11.4 -3.68351 | CGCGGCCTGGACACC GTCGCC ACC GGCGAC TTTGCCTGGTACGAC TERM 1100 1523536 - 1523578 + G 78 -12.8 -3.7108 | gap 3 CTTATTTCGACACCG CCGCCGACCATGCGCAGCGCG CCTG CGCGCTGC-C--GGTCGACGG TTTCCATATCGACCT TERM 1101 1524272 - 1524231 - g 74 -14.3 -3.27298 | GTGCGCAAGCAGGAA GCGCTGGGGCTGGACGTGC TGGT GCACGGCGAGGCCGAGCGC AACGACATGGTCGAA metE 1522797 - 1525187 + | Cobalamin-independent methionine synthase, 5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase TERM 1102 1525222 - 1525263 + T 100 -26.1 -4.57341 | opp_overlap 1525227, overlap 1525227 CACCGCCACGTAAAA AAAAACAGGCCGCATGCCC CGAC GGGCATGCGGCCTGTTTTC TTTTTACAGCGCCTT TERM 1103 1525258 - 1525227 - T 100 -26 -6.11644 | opp_overlap 1525227 1525222 CCACGTAAAAAAAAA CAGGCCGCATGCCC CGAC GGGCATGCGGCCTG TTTTCTTTTTACAGC TERM 1104 1525227 - 1525258 + T 100 -26 -5.26119 | opp_overlap 1525227, overlap 1525222 CCACGTAAAAAAAAA CAGGCCGCATGCCC CGAC GGGCATGCGGCCTG TTTTCTTTTTACAGC RALTA_B1421 1526678 - 1525284 - | conserved hypothetical protein; putative exported protein; DUF1254, 1214 catD 1527708 - 1526929 - | B-KETOADIPATE ENOL-LACTONE HYDROLASE catC 1528033 - 1527758 - | Muconolactone delta-isomerase 2 TERM 1105 1527943 - 1527959 + g 76 -7.9 -4.2679 | TGCCTTCGCGCTGCA GGCGCTG CGA CATCGCC TTTTCATCGGCCTTG RALTA_B1424 1528385 - 1528089 - | conserved hypothetical protein,YCII-related domain atoE 1529763 - 1528423 - | Short-chain fatty acids transporter TERM 1106 1528678 - 1528654 - G 72 -13.5 -3.22298 | CGCATCCACCATGAA CGGGCCCTGGA TCA CCCAGTGCCCG CCGCCGGACGGGGCG RALTA_B1426 1530337 - 1529960 - | conserved hypothetical protein; putative exported protein TERM 1107 1530448 - 1530428 - H 71 -8.1 -3.92659 | opp_overlap 1530431 1530433, overlap 1530422 GCCGGAAAAGCCAAA GCCCGGCCG CCG CCGCCGGTC CGCTTCTTGTCACTG RALTA_B1427 1530585 - 1532279 + | putative hydrolase; NUDIX (NUcleoside DIphosphate) hydrolase motif; Metallo-hydrolase/oxidoreductase TERM 1108 1532455 - 1532476 + T 100 -15.9 -4.74103 | opp_overlap 1532455 ATGCAGAAAGAAAAA GGGCTTCCG GAAA CGGAAGCCC TTTTTCCATTGCCGC TERM 1109 1532476 - 1532455 - T 100 -15.9 -5.38958 | opp_overlap 1532455 ATGCAGAAAGAAAAA GGGCTTCCG GAAA CGGAAGCCC TTTTTCCATTGCCGC RALTA_B1428 1533447 - 1532524 - | hypothetical protein TERM 1110 1533808 - 1533754 - g 72 -14.1 -3.15544 | gap 1 CGGCAGTGCGATGAA CGCCGGC-AGCGCCGCCGGCAGCG GGCCGCGA CGCAGCCTGCAGCGCAAGCTGGCG GTGGCCACCGCGGTG TERM 1111 1534657 - 1534690 + G 72 -14 -3.14344 | gap 2, overlap 1534680 CAACCGCTACGTGCC CACGCTG-G-AGCCGC TGGA GCGGCTGCGCAGCGTG TTCCTGGACGAAGTC RALTA_B1429 1533698 - 1535536 + | conserved hypothetical protein; cyclic di-GMP synthetase domain (GGDEF); modular protein TERM 1112 1535583 - 1535538 - T 73 -13.3 -3.21099 | gap 1, overlap 1535539 1535541 TGCCGGGACGATGAA CCAC-TGCGGGCAATGTCCGAA GGC TACGGACATTGCCCGCTCGCGC GGCAATACCGTTCAG TERM 1113 1535582 - 1535539 - T 79 -16.8 -2.52516 | gap 1, overlap 1535538 1535541 GCCGGGACGATGAAC CAC-TGCGGGCAATGTCCGAA GGC TACGGACATTGCCCGCTCGCG CGGCAATACCGTTCA TERM 1114 1535579 - 1535541 - T 81 -16 -2.80016 | overlap 1535539 1535538 CGGGACGATGAACCA CTGCGGGCAATGTCCGAA GGC TACGGACATTGCCCGCTC GCGCGGCAATACCGT TERM 1115 1535699 - 1535716 + T 77 -12.7 -3.61328 | opp_overlap 1535699 CCTGGAACGAAAAAA GGCTCGC TTGC GCGAGCC TTTCCGAATCTTGGT TERM 1116 1535716 - 1535699 - T 100 -12.7 -5.26875 | opp_overlap 1535699 CCTGGAACGAAAAAA GGCTCGC TTGC GCGAGCC TTTCCGAATCTTGGT codA 1537197 - 1535911 - | cytosine deaminase RALTA_B1431 1537880 - 1537230 - | putative transcriptional regulator, tetR family TERM 1117 1537449 - 1537400 - G 78 -14.1 -3.56347 | overlap 1537398 AGATGGTAAAGAACA GGTGCTGCGGATCGACCGGCGCC ATCT GGCCGCGGTCGATCCACTGCTGC ACCACCGCGGCCTTG upp 1538632 - 1537910 - | uracil phosphoribosyltransferase RALTA_B1433 1539970 - 1538678 - | conserved hypothetical protein, DUF1688 TERM 1118 1538726 - 1538711 - G 71 -11.8 -3.66178 | overlap 1538712 GCTGGTAATGGCAAA CGGCGG CGCG CCGCCG GGGCGGCGCTTGGCG RALTA_B1434 1541211 - 1539973 - | putative GTP cyclohydrolase II TERM 1119 1541236 - 1541253 + r 73 -11.3 -3.6715 | opp_overlap 1541235 GGTTCCCGATGGAAT CCTGACC AATC GGTCAGG TTTACGATTCCATAC RALTA_B1435 1542604 - 1541480 - | putative acyltransferase 3 RALTA_B1436 1544197 - 1542914 - | putative transporter, Major facilitator superfamily TERM 1120 1543477 - 1543467 - G 77 -3.2 -4.67982 | CCGCACGCAAGAAAA CCCA GGT TGAG CAGCCAGAATCCCGC TERM 1121 1544553 - 1544581 + G 70 -8.9 -3.90744 | gap 1, opp_overlap 1544548 TGCGCAAGCATCGCG GCG-TCGCCTTC ACCGCC GAGGGCGAGCGC TTGTTTCGCAGCGCC TERM 1122 1544974 - 1545032 + G 100 -22.5 -3.17194 | gap 2, overlap 1544978 TCCGCGCCCGTGGCT GCAATGGCGCAGCTGGCTGGCCCCGCGCG ACC TGCGCCAGGCCAGCCAGC-GCGGCAT-GC TTCGCTTCAACCAGT TERM 1123 1544978 - 1545029 + G 87 -23 -2.78712 | gap 1, overlap 1544974 CGCCCGTGGCTGCAA TGGCGCAGCTGGCTGGCCCCGCGCG ACC TGCGCCAGGCCAGCCAGC-GCGGCA TGCTTCGCTTCAACC RALTA_B1437 1544369 - 1545301 + | putative transcriptional regulator , LysR family RALTA_B1438 1545557 - 1545270 - | hypothetical protein TERM 1124 1545681 - 1545720 + r 86 -16.4 -3.12351 | gap 1 GCGCTGCCCCGCGCG CGTCGCG-CCCTGGGCCAG CGC CTCGCCGGGGGGCGCGACG TTGAGTGTCGCCAGC rtxC 1547009 - 1545663 - | Type I secretion outer membrane protein, TolC/prtF family rtxA 1552132 - 1547186 - | metalloprotease, Hemolysin-type calcium-binding region TERM 1125 1549193 - 1549217 + g 80 -16.5 -3.15861 | overlap 1549207 CGTGTCTTCGTTCGT CGATGCGGTGA TGG TCGCCGCATCG TTGGTGCCGGTGATA TERM 1126 1549277 - 1549295 + g 79 -14.6 -3.28924 | opp_overlap 1549276 GTCGGCCGATGACAC GGTCAGCG CAT CGCTGACC TTCTGCCCGGCAGTC TERM 1127 1549619 - 1549637 + g 74 -14.6 -3.01924 | opp_overlap 1549618 GTCGGACGACCACAC GGTCAGCG TAT CGCTGACC TGTTGGCCGGCGATC TERM 1128 1550303 - 1550321 + g 79 -14.6 -3.28924 | opp_overlap 1550302 GTCGGCCGATGACAC GGTCAGCG CAT CGCTGACC TTCTGCCCGGCAATC TERM 1129 1551631 - 1551674 + g 87 -17.4 -3.31461 | overlap 1551627 1551624 TATCCCTGCCATTGC CGCCGGCGATGATGTCGTCG CCGC CGACGGCAGCGTCGTCGCCG TTGTCGCCGTAGATC TERM 1130 1551846 - 1551826 - G 93 -18.3 -3.53012 | TGTCGCCGTTGTAAA GCGCCGACG CTC CGTCGGCGC TGCCGATCACATCGT TERM 1131 1552213 - 1552198 - R 73 -8.2 -4.08767 | opp_overlap 1552202 1552203 GTTATCGTTGCAAAA CGCCAG CGTG CCGGCG CGCCTTGTCCTACCG rtxD 1553605 - 1552223 - | Type I protease secretion protein, haemolytica toxin secretion prtE family (hlyD) rtxB 1555781 - 1553589 - | ABC transporter, type I secretion apparatus, transmembrane component, ATP binding gltI 1556237 - 1557082 + | glutamate/aspartate transport protein (ABC superfamily, peri_bind) high affinity periplasmic solute-binding protein TERM 1132 1557581 - 1557565 - g 70 -3.6 -4.51224 | overlap 1557561 AACAGCAAGAAGAAA GCCGCT TCCGC ACCGGC TGCCAGCTGAACCAC RALTA_B1444 1557268 - 1557591 + | conserved hypothetical protein; putative exported protein TERM 1133 1557610 - 1557639 + T 78 -15.9 -2.79183 | opp_overlap 1557618, overlap 1557618 ACGTCTGCCGCCGGA CAGAAAAACCCGC CTCG GCGGGTTTTTTTG TGTGCTCGCGGTCGA TERM 1134 1557618 - 1557631 + T 100 -9.5 -5.74122 | opp_overlap 1557618, overlap 1557610 CGCCGGACAGAAAAA CCCGC CTCG GCGGG TTTTTTTGTGTGCTC TERM 1135 1557631 - 1557618 - T 100 -9.5 -4.96848 | opp_overlap 1557610 1557618 CGCCGGACAGAAAAA CCCGC CTCG GCGGG TTTTTTTGTGTGCTC RALTA_B1445 1558553 - 1557684 - | conserved hypothetical protein; putative exported protein TERM 1136 1558677 - 1558689 + H 82 -3.3 -5.12068 | GTGGCTGACTGACAT CGCAA TTA TCGCG TTTTTGTTGCGTGTG TERM 1137 1558877 - 1558887 + G 72 -8.2 -4.10007 | overlap 1558886 GCCGTGCTACCATTG CGCG CCT CGCG TTTTCCAGCGGTTGT RALTA_B1446 1558790 - 1558999 + | hypothetical protein arnT 1559033 - 1560790 + | Undecaprenyl phosphate-alpha-4-amino-4-deoxy-L-arabinose arabinosyl transferase (Undecaprenyl phosphate-alpha-L-Ara4N transferase) (4-amino-4-deoxy-L-arabinose lipid A transferase) RALTA_B1448 1560809 - 1561180 + | Conserved hypothetical protein; putative inner membrane protein arnB 1561224 - 1562405 + | PLP-dependent aminotransferase, UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase arnC 1562402 - 1563361 + | Undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase ((Ara4FN transferase) RALTA_B1451 1563361 - 1564299 + | putative formyltransferase RALTA_B1452 1564296 - 1565348 + | putative UDP-glucuronic acid decarboxylase (UDP-GlcUA decarboxylase) TERM 1138 1565754 - 1565769 + G 71 -11.8 -3.55548 | opp_overlap 1565713 1565712 1565750, overlap 1565712 1565762 CCGCGACCAGATGCA GCGCGC CTTC GCGCGC TTTCGCGAGATCTTC RALTA_B1453 1565362 - 1566261 + | putative polysaccharide deacetylase RALTA_B1454 1568681 - 1566333 - | cation (putative cadmium)-transporting ATPase (Cadmium efflux ATPase) TERM 1139 1568743 - 1568721 - R 73 -12.8 -3.14468 | CCTGATGACATTGAA GACCCTGTAG TGG CTACAGAGTC AAGCGGCATGGCGGT TERM 1140 1568778 - 1568746 - R 80 -14.8 -3.15999 | TGGCTACAGAGTCAA GCGGCATGGCGGTC GCGAT GCCGGCCATGCCGC GGCGAGCCGCTAGTG RALTA_B1456 1569234 - 1568788 - | hypothetical protein czcS 1570774 - 1569317 - | Sensor histine kinase of the two component regulatory system, heavy metal resistance operon czcCBA activation czcR 1571460 - 1570771 - | response regulator in two-component regulatory system, regulation of heavy metal resistance operon czcCBA RALTA_B1459 1571687 - 1572106 + | conserved hypothetical protein; putative exported protein RALTA_B1460 1572376 - 1572128 - | hypothetical protein TERM 1141 1572493 - 1572475 - H 75 -3 -4.8622 | overlap 1572492 GCGGGCAATGAAAAA CCGGCGAT GGA ACCACAGG CCGGTCGGACAGCCA RALTA_B1461 1572682 - 1572957 + | conserved hypothetical protein; putative exported protein RALTA_B1462 1573866 - 1572982 - | conserved hypothetical protein, DUF849 RALTA_B1463 1574846 - 1573863 - | 3-hydroxyacyl-CoA dehydrogenase TERM 1142 1574934 - 1574916 - H 76 -7.5 -4.37092 | opp_overlap 1574915 ATTTTCTGGATAAAA TGATCTG CAAAC CAGATCA ATCGCTTTCCGTCCG RALTA_B1464 1574977 - 1575915 + | putative transcriptional regulator, LysR family RALTA_B1466 1578236 - 1578042 - | conserved hypothetical protein; putative exported protein RALTA_B1465 1575912 - 1578149 + | Sodium/hydrogen exchanger RALTA_B1467 1578505 - 1579383 + | putative 3-hydroxyisobutyrate dehydrogenas, NAD-binding osmB 1579572 - 1579709 + | osmotically inducible lipoprotein (putative ) TERM 1143 1579761 - 1579731 - T 100 -22.7 -3.86346 | opp_overlap 1579731 GTACGGCGCCAGAAA GCATCCAGGCCGC TGCGT GCGGCCTGGATGC TTTTGCTTGCGAGCT TERM 1144 1579731 - 1579761 + T 100 -22.7 -4.41047 | opp_overlap 1579731 GTACGGCGCCAGAAA GCATCCAGGCCGC TGCGT GCGGCCTGGATGC TTTTGCTTGCGAGCT RALTA_B1469 1580608 - 1579775 - | putative Glycosyl transferase RALTA_B1470 1580908 - 1580648 - | putative Acyl carrier protein RALTA_B1471 1581225 - 1581908 + | conserved hypothetical protein, putative TRANSMEMBRANE PROTEIN TERM 1145 1582553 - 1582579 + G 73 -12.3 -3.48395 | gap 2 CTGGCGCTGCAGGGA CGCGCGGCGCTGG TGG CC-GCGCCG-GCG TTCTATCCGGCCGAT RALTA_B1472 1581959 - 1583680 + | putative enzyme; Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases domain TERM 1146 1584363 - 1584405 + G 100 -22.9 -4.06419 | GCCGACGGGCTTCCC CACCGGCCCGCTGC-GCATGG CGG CCATGCTGCGGCG-GCCGGTG TTCTTTATCACCGGC RALTA_B1473 1583674 - 1584648 + | hypothetical protein RALTA_B1474 1584666 - 1585292 + | conserved hypothetical protein, putative exported protein TERM 1147 1587152 - 1587112 - g 73 -7.3 -4.11216 | opp_overlap 1587139, overlap 1587115 GGTGCATGCGCAAAA CCATGCCGGCGCGGCCGAC GGC GTCGACAGCGCCGCGGTGC GTGCCGCGATCCAGC TERM 1148 1587613 - 1587637 + G 79 -11.3 -4.10161 | CGGCCTGACAGTCGG CCCCGGCGCCG TGC TGGCGCTGTGG TTTTCGGCCATCCTC RALTA_B1475 1585289 - 1587703 + | putative exporter, TRANSMEMBRANE PROTEIN TERM 1149 1588032 - 1588047 + G 86 -6 -4.87665 | CCTGCTCGACCAGCA CGGCGC CAGC GCGACG TTTTTCTGCATCGGC TERM 1150 1588376 - 1588356 - g 88 -15.4 -3.68222 | CCTGAACGGCAACAA CGCCGCGC GCGTG GCGCGGCG CCTGTACGGCACGCT RALTA_B1476 1587799 - 1588548 + | putative polysaccharide deacetylase TERM 1151 1588534 - 1588559 + F 84 -13.9 -3.68222 | overlap 1588553 ACGCTGCGCGCAGCG GTGCCGCCGGC CTGA GCCGGCGCCGC TTGTTACAATTGGCG TERM 1152 1588868 - 1588913 + G 73 -10.4 -3.85698 | gap 2, overlap 1588874 CGGCTTTGCCGCACG GGTACGCGAGGCGGCGGCGCGC TACG GCGC-CCACCGCATCG-GTGTC TTTCTCGGCACCAGC RALTA_B1477 1588614 - 1589816 + | 3-OXOACYL-[ACYL-CARRIER-PROTEIN] SYNTHASE (BETA-KETOACYL-ACP SYNTHASE II) TERM 1153 1589939 - 1589892 - g 72 -13.2 -3.14211 | overlap 1589854 1589896 ACCGGCTGGCAGCAA GCCAGCGCCGTGCTCGCGGGGC GCAC GCCCCACGCGCACGCGGCCACC GAGCTGCCGCTGCCC TERM 1154 1589935 - 1589896 - g 77 -17 -2.56596 | overlap 1589854 1589892 GCTGGCAGCAAGCCA GCGCCGTGCTCGCGGGGC GCAC GCCCCACGCGCACGCGGC CACCGAGCTGCCGCT RALTA_B1478 1589826 - 1590638 + | hypothetical protein RALTA_B1479 1590631 - 1591110 + | putative beta-hydroxyacyl-acyl carrier protein (ACP)-dehydratase fahA 1592397 - 1591135 - | Fumarylacetoacetase (Fumarylacetoacetate hydrolase) hmgA 1593901 - 1592531 - | Homogentisate 1,2-dioxygenase TERM 1155 1594177 - 1594204 + r 77 -14 -3.35813 | opp_overlap 1594174 1594173, overlap 1594178 AGGGACAAAAGTGGC TCGGCGCGCGCC GGGA GGCACGCGCCGC TTGCTTAGGGTGGCC TERM 1156 1594178 - 1594203 + r 83 -17.5 -2.61274 | opp_overlap 1594174 1594173, overlap 1594177 GGGACAAAAGTGGCT CGGCGCGCGCC GGGA GGCACGCGCCG CTTGCTTAGGGTGGC RALTA_B1482 1594615 - 1594280 - | putative DNA binding helix-turn helix protein TERM 1157 1594571 - 1594555 - G 76 -13.7 -3.53091 | AGGCTTCCCGTGAAA TGCCCGC CTT GCGGGCA ACGTCCTCCTGCTTG RALTA_B1483 1594903 - 1595616 + | putative transcriptional regulator, TetR family TERM 1158 1595634 - 1595667 + F 100 -7.3 -5.67063 | gap 1, opp_overlap 1595619 1595654, overlap 1595635 1595654 TCGGCGCCGGCGCTA CCCCGCCGGCG-GG CAGCAAA CCGCTCCGGCGGGC TTTTTTTGTACTGAA TERM 1159 1595635 - 1595666 + F 82 -10.8 -3.99153 | gap 1, opp_overlap 1595619 1595654, overlap 1595634 1595654 CGGCGCCGGCGCTAC CCCGCCGGCG-GG CAGCAAA CCGCTCCGGCGGG CTTTTTTTGTACTGA RALTA_B1484 1595782 - 1596798 + | conserved hypothetical protein; putative Lysophospholipase RALTA_B1485 1596813 - 1597145 + | hypothetical protein aliA 1598894 - 1597245 - | Cyclohexanecarboxylate-CoA ligase TERM 1160 1598703 - 1598681 - G 71 -11.2 -3.55444 | TGCCGAGGCGGGAAA GACCCACCGC CAC GCGGTCGGCC ATGCGCGCGAGTTCC badJ 1600097 - 1598946 - | Cyclohexanecarboxyl-CoA dehydrogenase badI 1600901 - 1600119 - | 2-ketocyclohexanecarboxyl-CoA hydrolase badH 1601633 - 1600935 - | 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase TERM 1161 1601726 - 1601763 + H 95 -11.4 -4.46514 | gap 2, overlap 1601717 TCCTTTCAGGGTTCC GGTGCTATCGTGCCGGCG GTGT CGCCGCCAC-AT-GCACC TTTATTTACGTCAAT badR 1601842 - 1602363 + | Transcriptional activator of cyclohexanecarboxylate anaerobic degradation; MarR type RALTA_B1491 1602606 - 1602899 + | hypothetical protein TERM 1162 1602956 - 1602932 - f 100 -17.1 -3.71848 | opp_overlap 1602953 CCTTGTCATGAAGAA CGCCCGCCATG GCG CCTGGCGGGCG TTGCCGCCGCCGGAT RALTA_B1492 1603077 - 1603301 + | hypothetical protein RALTA_B1493 1603371 - 1604417 + | putative transmembrane protein TERM 1163 1604854 - 1604836 - g 75 -6.6 -4.43844 | CCAGCAGGCACAAAA CCTCAGCG ACG CGCTGCAG AATTCCGCCGGCGTG fhuA3 1604582 - 1606681 + | TonB-dependent siderophore receptor, HYDROXAMATE-TYPE FERRISIDEROPHORE RECEPTOR precursor fdwA 1609554 - 1606732 - | tugsten containing formate dehydrogenase alpha subunit; 2Fe-2S ferredoxin N-term domain TERM 1164 1606988 - 1606950 - G 73 -9.5 -3.85698 | gap 1, overlap 1606977 CGGCGCGCGCATAAA GCGTGACCTCGCCG-CGC CGCG ACGACAGCGTGACCACGC CGCCGGGCGTGCCGC fdwB 1611290 - 1609581 - | tungsten-containing formate dehydrogenase beta subunit TERM 1165 1609881 - 1609866 - G 73 -10.4 -3.89346 | GGCCGAGCCGATAAA GCAGCC GTAG GGCTGC AGCGTGTCGAAGTCG TERM 1166 1611323 - 1611367 + r 100 -19.4 -4.05607 | overlap 1611324 TTTGTGGGGTTGCGC TGCGCGATCAGGAGGGCG-CCC GGC GGGCCGCCCTCCTG-TCGTGCC TTGTTGTTGTCGTAT TERM 1167 1611324 - 1611366 + r 100 -22.9 -3.02279 | overlap 1611323 TTGTGGGGTTGCGCT GCGCGATCAGGAGGGCG-CCC GGC GGGCCGCCCTCCTG-TCGTGC CTTGTTGTTGTCGTA TERM 1168 1611407 - 1611464 + r 79 -8.5 -4.25056 | GGGCGTGGCCGCCGT GCAGGCATCGCAGCCGC-C-GCGCCCGGT TACC GCCG-GCGCCGCGCGGGTGCCGT-CCTGC TTTCTTCATCAGGTC RALTA_B1497 1612792 - 1611473 - | putative transporter; Major facilitator superfamily MFS_1 RALTA_B1498 1613639 - 1613421 - | conserved hypothetical protein; putative outer membrane protein RALTA_B1499 1614709 - 1613786 - | putative transcriptional regulator; LysR TERM 1169 1615857 - 1615847 - g 70 -8.2 -3.96068 | overlap 1615848 GCATCGCAAGAACAA GCGG CTG CCGC CGGTGGCGCTGGCGT RALTA_B1500 1615014 - 1615967 + | transcriptional regulator, HTH LysR; similar to cbbR, activator of RUBISCO operon TERM 1170 1615962 - 1615981 + F 71 -5.8 -4.3467 | overlap 1615963 GAGGCCCGCGTGACG TCATAAAC GATC GTTTATGG TTTTGCTATGAAACT RALTA_B1501 1616072 - 1616377 + | hypothetical protein TERM 1171 1616397 - 1616425 + T 100 -14.6 -5.46657 | gap 1 GGCCCGATCGGTTCA CGGCGAGGTGCGC GGCA GCG-GCCTCGCCG TTTTTTGTTCAGCTG RALTA_B1502 1616892 - 1616434 - | conserved hypothetical protein; putative integral membrane protein TERM 1172 1616503 - 1616482 - G 75 -5.7 -4.45544 | CGCCAGGAACGAAAA CAGCGCCGG AAAG CCGAGGCCG AACCACCACCAGAAC RALTA_B1503 1618205 - 1616874 - | putative nucleoside-diphosphate-sugar epimerase; putative membrane protein TERM 1173 1617161 - 1617113 - G 72 -15.2 -2.87132 | gap 2, overlap 1617098 1617079 GCGCGGCGCCATACA GCGCCAGCGGCTGCAGCGCCGGCG GCA CGCCCGCGC-GC-GCCAGCAGCGC ATAGCTGTCGGCCAC TERM 1174 1617331 - 1617306 - G 73 -10.3 -3.85698 | overlap 1617307 TCCGGGTGGGATAAA CGCAGCCACCG CCCG CGGCGGCCGCC CCAGCACGTGCTCAA RALTA_B1504 1618224 - 1618685 + | hypothetical protein katN 1618975 - 1619874 + | non-haem manganese-containing catalase rpoS-dependent mntH 1621230 - 1619950 - | Manganese transport protein, NRAMP family RALTA_B1507 1621558 - 1621277 - | hypothetical protein RALTA_B1508 1622196 - 1621759 - | putative signal sensor protein, isolated PAS domain TERM 1175 1622322 - 1622291 - R 100 -17.3 -4.93365 | gap 1 CGCCACAAGCAAAAA CGCCGGAGCC-CGC TGTGC GCGCGGCCCCGGCG TCGGCGCCGGCACGG frc 1623604 - 1622354 - | formyl-CoA transferase, NAD(P)-binding oxc 1625384 - 1623645 - | oxalyl-CoA decarboxylase TERM 1176 1625180 - 1625154 - G 70 -8.7 -3.85698 | gap 1, opp_overlap 1625153 1625154 CTTCTGCGTGAGAAA GCCCGCAATCGC CGCG GCG-TTGCCGGC ATTCTGCTCGTGGCG RALTA_B1511 1627249 - 1625909 - | putative transporter, Major facilitator superfamily MFS_1 TERM 1177 1627281 - 1627302 + r 70 -7.9 -3.97636 | overlap 1627271 TACGTTCTTGATTGC GCCCTGGCG GGCG CATCAGGGC TTTGTGGATTGCCCT TERM 1178 1627532 - 1627492 - R 100 -31.3 -3.17075 | opp_overlap 1627522, overlap 1627495 GGTGCCGGAACGCAA CAAGCCACCGCGGTCCGCC CGA AGCGGACCGCGGTGGCCTG GGAGCACCGATACGC TERM 1179 1627529 - 1627495 - R 100 -29.4 -3.73068 | opp_overlap 1627522, overlap 1627492 GCCGGAACGCAACAA GCCACCGCGGTCCGCC CGA AGCGGACCGCGGTGGC CTGGGAGCACCGATA pntB2 1628960 - 1627563 - | pyridine nucleotide transhydrogenase (proton pump), beta subunit pntA2 1630536 - 1628977 - | pyridine nucleotide transhydrogenase (proton pump), alpha subunit RALTA_B1514 1631356 - 1630574 - | Fumarylacetoacetate (FAA) hydrolase RALTA_B1515 1632738 - 1631506 - | formyl-CoA transferase, NAD(P)-binding, CaiB/BaiF family TERM 1180 1633027 - 1633008 - R 100 -15 -5.55855 | CCCAAAAAAACAAAA CGGCGGAC CGAA GTCCGCCG TCTCACGCACCTGGA RALTA_B1516 1633772 - 1633053 - | putative transcriptional regulator, HTH GntR TERM 1181 1633793 - 1633826 + r 70 -12.3 -3.14881 | gap 1 TGCTCGTGTGAGACC GGCGGCCGGGCCGCCG GAA TGGCTGCCCG-CCGCA TTGCTGCACAGCTTA TERM 1182 1633905 - 1633849 - R 75 -4.4 -4.74132 | gap 1, overlap 1633868 1633878 ACAGCTTAGCAAAAA CGT-CCGATCCATTAAGAAAGCGCATC AAAC GATGCGCGGTCCACATGCATCGGCACA GAAGCGGTGCGCGGC TERM 1183 1633885 - 1633868 - R 89 -11.3 -4.258 | overlap 1633849 1633878 CGATCCATTAAGAAA GCGCATC AAAC GATGCGC GGTCCACATGCATCG panE 1635013 - 1634036 - | Ketopantoate reductase RALTA_B1518 1635201 - 1635974 + | putative Integral membrane protein, TerC family RALTA_B1519 1636085 - 1637695 + | Periplasmic glucan biosynthesis protein, MdoG family TERM 1184 1637707 - 1637732 + F 81 -13.9 -3.57615 | CTGAGGCACCAGGTC GCGCTGGGCCG GCGC CGGCCCGGCCC TTTACACCATATTGC RALTA_B1520 1637824 - 1638516 + | putative transcriptional regulator, HTH GntR RALTA_B1521 1639429 - 1638554 - | putative inner membrane protein, DUF6 TERM 1185 1639548 - 1639504 - R 83 -7.8 -4.67038 | opp_overlap 1639515 GCGGCAAAACGAAAA GCGCTGGCAAGCCTTGTGAA GGTTG CTCACAAAGCACTTCAGCGC CGCAGGCAAAACAAA TERM 1186 1639583 - 1639565 - R 93 -7.3 -5.10933 | opp_overlap 1639565 GCAGGCAAAACAAAA CCGGCCG CGTTT CGCCCGG GCGGGCGCACGTATG RALTA_B1522 1639842 - 1639657 - | hypothetical protein RALTA_B1523 1640918 - 1640034 - | putative Short-chain dehydrogenase/reductase SDR; putative membrane protein chrB 1641076 - 1642032 + | chromate resistance protein B TERM 1187 1643052 - 1643064 + G 70 -9.1 -3.92373 | GTATGGAAAACTGCC GGCCA TCT TGGCC TTTGTCGATGGCGTC chrA 1642072 - 1643274 + | Chromate resistance protein A RALTA_B1526 1644725 - 1643403 - | Acyl-CoA dehydrogenase cat2 1644895 - 1646199 + | 4-hydroxybutyrate coenzyme A transferase RALTA_B1528 1646240 - 1647448 + | putative acetyl-CoA acetyltransferase with thiolase domain TERM 1188 1648682 - 1648658 - T 74 -14.9 -2.52464 | GCGCGCCGGAACTGA CCGCCGATGCG CTG CGCCCCGGCGG CTGGCTCAACACCGG TERM 1189 1649038 - 1649089 + T 100 -20.1 -3.68351 | gap 2, opp_overlap 1649031 CTCAAGCACCAGCTG CGGCAGCTGCTCGCGGGCCAGGCGT AGCC GCGCC-GGCCCGCCGGC-GCGGCCG TTTCAGTCCTGGCGC RALTA_B1531 1649994 - 1649092 - | putative transcriptional regulator; LysR family RALTA_B1532 1650678 - 1650070 - | putative transcriptional regulator, HTH AraC RALTA_B1533 1651697 - 1650789 - | putative transcription regulator, LysR family RALTA_B1534 1651828 - 1653036 + | amidohydrolase; putative HIPPURATE HYDROLASE PROTEIN (similar to hipO) RALTA_B1535 1653087 - 1654070 + | conserved hypothetical protein; UPF0065 TERM 1190 1654096 - 1654082 - T 71 -9.2 -3.77722 | CTGAAGCAGCAAGAA GCACGG CGG CCGCGC GGCATCAAGGCGCGC RALTA_B1536 1655609 - 1654101 - | conserved hypothetical protein; similar to Glucose/sorbosone dehydrogenase; putative secreted protein TERM 1191 1656533 - 1656543 + G 72 -4.6 -4.40333 | TTGCAACGTTCCCCG TGGC CCT GCCG TTTCTCTTGTTTGCG RALTA_B1537 1656049 - 1656726 + | hypothetical protein RALTA_B1538 1656837 - 1657418 + | hypothetical protein TERM 1192 1657805 - 1657788 - g 75 -10.5 -4.07568 | CCGGCCGCGGCAAAA GCGGCGA CAAC CCGCCGC GCCCCGAATGCGCGC RALTA_B1539 1657472 - 1658104 + | conserved hypothetical protein; Uracil-DNA glycosylase superfamily RALTA_B1540 1658951 - 1658127 - | putative transcriptional regulator, IclR family TERM 1193 1659014 - 1659004 - H 78 -3.2 -5.07652 | CTTCCGAAAATAAAA TCCG GAA CAGA ACGTTTCAGATTATA TERM 1194 1659065 - 1659032 - H 83 -11.7 -4.0162 | gap 1, overlap 1659016 1659037 GTTTCAGATTATAAA TCTAAGCCGGAGGGCA GCG CGCCCGCCGGCC-AGA AACAGGAGACAGCGA TERM 1195 1659061 - 1659037 - H 82 -14.9 -3.34856 | overlap 1659016 1659032 AGATTATAAATCTAA GCCGGAGGGCA GCG CGCCCGCCGGC CAGAAACAGGAGACA TERM 1196 1659506 - 1659475 - g 72 -15 -2.86271 | overlap 1659472 GCTCGAGCACAACGA CCTCGGCGCCGGGC CGAC GCGCGGCACCGGGG GCCCGCTCAATGCCA betA2 1659083 - 1660738 + | choline dehydrogenase, a flavoprotein TERM 1197 1662183 - 1662157 - g 82 -15 -3.53012 | CCGCCCCGCGCGAAA GCGGCGTGCCGC TGC GCGGCCCGGCGC GCTGACCGCAAGCGT shiA 1660860 - 1662188 + | shikimate and dehydroshikimate transport protein (putative); MFS family transporter RALTA_B1543 1662278 - 1663000 + | putative transcriptional regulator, GntR family RALTA_B1544 1663747 - 1663013 - | hypothetical protein RALTA_B1545 1664587 - 1663919 - | putative hydrolase; alpha/beta fold TERM 1198 1664535 - 1664561 + g 86 -12.3 -4.19817 | gap 1 ACCAGCAGTTCAATC GGCCCGGCTTCG CCGT CGA-GCCGGGTC TTTTCGGTGCCTGAC TERM 1199 1664635 - 1664620 - H 70 -11.8 -3.22521 | TCGAGACTAAGGTAA GGGCCG CGCA CGGCCC GAAGTCCGCGATGTT TERM 1200 1664814 - 1664839 + H 75 -11.7 -3.65351 | overlap 1664815 GCAAGGCCCGTTGCA CCGGCCGGCCG CCCG CGGCCAGCCGC TTTCGATGCCCCTCG TERM 1201 1664815 - 1664838 + H 78 -15.2 -2.78996 | overlap 1664814 CAAGGCCCGTTGCAC CGGCCGGCCG CCCG CGGCCAGCCG CTTTCGATGCCCCTC RALTA_B1546 1665057 - 1667522 + | putative Small-conductance mechanosensitive channel (MscS) RALTA_B1547 1668075 - 1667560 - | putative transcription regulator, MarR TERM 1202 1667646 - 1667665 + g 74 -16.4 -2.72344 | CTTCCTGCGCCGACA GGCCCGCC GCCA GGCGGGCC TCGTTGACCATGACG RALTA_B1548 1668143 - 1668643 + | putative enzyme TERM 1203 1668780 - 1668757 - g 72 -13.8 -3.14564 | GCATCGGCCGAGGAA CTGGTGGCGC GCTG GCGCCGCCAG GCCGCGACGGGCTAT RALTA_B1549 1668640 - 1669101 + | putative acetyltransferase RALTA_B1550 1669098 - 1669715 + | (Acyl-carrier protein) phosphodiesterase TERM 1204 1669997 - 1669957 - g 78 -16.1 -3.05268 | opp_overlap 1669958, overlap 1669993 CAAGCAGCTGGAAGA GGCGCTTGGCGTGGCGCTG TTC CAGCGCGACAGCAAGCGCA TGCTGCTGACACCCG RALTA_B1551 1669835 - 1670722 + | putative transcriptional regulator, LysR family RALTA_B1552 1670789 - 1671904 + | 2-nitropropane dioxygenase, NPD RALTA_B1553 1672074 - 1672424 + | conserved hypothetical protein; putative exported protein RALTA_B1554 1672436 - 1673020 + | putative Methyltransferase TERM 1205 1673073 - 1673042 - T 100 -21 -5.48213 | opp_overlap 1673042 CACGGAAAAGAAAAA CGCCCCATGCAAGC AGCG ACTTGCATGGGGCG TTGTCTTTGGAGCAA TERM 1206 1673042 - 1673073 + T 100 -20.3 -3.81488 | opp_overlap 1673042 CACGGAAAAGAAAAA CGCCCCATGCAAG CAGCGA CTTGCATGGGGCG TTGTCTTTGGAGCAA cusA 1676400 - 1673284 - | outer membrane copper (silver) and drug transport protein (RND family) cusB 1677567 - 1676407 - | Secretion protein of the copper-transporting efflux system CusCFBA cusC 1678976 - 1677570 - | Outer membrane protein of the copper-transporting efflux system CusCFBA TERM 1207 1678244 - 1678209 - G 73 -7.5 -4.18018 | gap 1 GCCCGCCAGCGAAAA CTGCCCCGGCATGGCG CCGCC CACC-TGCTGGCGCAG CGCGGCCTTGGCCTG RALTA_B1558 1679682 - 1679236 - | putative auxiliary protein (cusF homolog) of the copper-transporting efflux system CusCFBA TERM 1208 1679279 - 1679266 - G 72 -3.7 -4.56597 | overlap 1679267 1679268 GGGCGGCCGGAAAAA GGCCG AAGG CGGCG GATCGGCGCGGCCTG TERM 1209 1680059 - 1680042 - g 70 -4.1 -4.4009 | gap 1, overlap 1680054 CGGCAGGGCAGAAAA CGTCGGAC TAC ATCCG-CG ACGCCGTTCGCGAGA RALTA_B1559 1679915 - 1680187 + | putative antitoxin protein of the toxin/antitoxin system RALTA_B1560 1680180 - 1680539 + | putative toxin of a toxin/antitoxin system, PemK-like TERM 1210 1680544 - 1680574 + T 86 -17.7 -2.62616 | opp_overlap 1680559 1680560, overlap 1680560 TGCGGCTCTAGGCCT TGCAGCGATGCAG AACGG CTGCGTCGCTGCA TGATATGCAGCGTCA RALTA_B1561 1682232 - 1680610 - | putative Thiosulfate sulfurtransferase Rhodanese-like TERM 1211 1681236 - 1681256 + g 70 -15.4 -2.82193 | CCGCCAGCACGATGC GCGCGCCG CGCAC CGGCGCGC TGTGGTCGGTCTCCT RALTA_B1562 1682846 - 1682229 - | putative Cysteine dioxygenase type I RALTA_B1563 1684164 - 1682953 - | putative Acyl-CoA dehydrogenase TERM 1212 1684207 - 1684187 - H 100 -5.3 -5.41143 | overlap 1684190 1684191 GACTCCGGAAAAAAA TCAGCGCGC GGT GCGCATCGA ATGCCGCCTAGCGTA TERM 1213 1684980 - 1685024 + G 73 -12.9 -3.41013 | gap 3, overlap 1684979 GTGCGCGAGCTGACC GCGCG-CGTGCGCGCCGAAGCC GCGC GGCA-CGGC-CGCACGGTGCGC TTCTCGGTATCGTTC RALTA_B1564 1684380 - 1685456 + | alkanesulfonate monooxygenase, FMNH(2)-dependent, similar to ssuD RALTA_B1565 1685550 - 1686518 + | ABC transporter, substrate-binding component (nitrate/sulfonate/bicarbonate) TERM 1214 1686608 - 1686666 + F 93 -16.8 -3.74693 | gap 4, opp_overlap 1686600, overlap 1686608 CAAGCGACGCCGCAT C-CCGCC-ACGCCAGCCCGGTGTGG--GCC ACT GGCATCCTCGCCGCGCTGGCGTGGGCGGCG TTTGGTGCGCTGACG TERM 1215 1686608 - 1686665 + F 87 -17 -2.84602 | gap 3, opp_overlap 1686600, overlap 1686608 CAAGCGACGCCGCAT CCCGCC-ACGCCAGCCCGGTGTGG--GCC ACT GGCATCCTCGCCGCGCTGGCGTGGGCGGC GTTTGGTGCGCTGAC RALTA_B1566 1686625 - 1687584 + | putative nitrate-sulfonate transport system, inner membrane component RALTA_B1567 1687626 - 1688456 + | taurine transport protein, ABC superfamily, atp_binding component (similar to ssuB) TERM 1216 1689000 - 1689036 + G 79 -15.7 -3.30441 | GCCGCCGACGCTGGC CGGCCCGCTGCTGGCGC GGC GCGCCGACGGCGAGCTG TTCTGGCACGTGCTG RALTA_B1568 1688497 - 1689672 + | conserved hypothetical protein, haem motif TERM 1217 1691363 - 1691343 - g 70 -12.5 -3.28712 | opp_overlap 1691329 1691333 CCTGCGCTTCGAGAA GCCGCGCAG CTT CTTCGCGGC GATGAGCTGGGGCAA xsc 1689943 - 1691838 + | Sulfoacetaldehyde acetyltransferase, taurine utilization TERM 1218 1692017 - 1692040 + F 100 -11 -5.2696 | gap 1, opp_overlap 1692017 AGGGGAGAACACCAA GGGCATAGCGC AAG GCGCTG-GCCC TTTTTTCCGTTTTAC pta 1692071 - 1693105 + | phosphate acetyltransferase (taurine catabolism pathway) RALTA_B1571 1693102 - 1693872 + | conserved hypothetical protein; putative membrane protein; DUF81 TERM 1219 1693904 - 1693941 + T 74 -13.3 -3.33696 | gap 1, overlap 1693906 TCCGCTTGCTGTCAG GCCACCGTCCCCGCCGGC CGC GCCAGCGGTG-CGGTGTC TTCCTTGCCGCCACC TERM 1220 1693906 - 1693939 + T 80 -14.5 -3.23853 | gap 1, overlap 1693904 CGCTTGCTGTCAGGC CACCGTCCCCGCCGGC CGC GCCAGCGGTG-CGGTG TCTTCCTTGCCGCCA RALTA_B1572 1695204 - 1693900 - | putative General substrate transporter; Major facilitator superfamily MFS_1 RALTA_B1573 1696739 - 1695249 - | Amidase TERM 1221 1696277 - 1696221 - G 100 -13.7 -4.60041 | gap 3, overlap 1696211 1696224 ACCCACGTCGAAAAA CGACAGGCCGGCGCAGACCGCCGCGGCG CTGC CGCCG-GACGAGCCGC-CCGGCGTG-CG CGCCGGATCGTGCGG TERM 1222 1696275 - 1696224 - G 77 -15.1 -3.24422 | gap 2, overlap 1696211 1696221 CACGTCGAAAAACGA CAGGCCGGCGCAGACCGCCGCGGCG CTGC CGCCG-GACGAGCCGC-CCGGCGTG CGCGCCGGATCGTGC TERM 1223 1696544 - 1696497 - G 79 -15 -3.35679 | gap 3, overlap 1696482 CTCCTTGACCGAGAA CGGCA-CGCCGT--CGAGCACGC CGCGT GCGTGCCCGCCACGGCGGCGCCG GTCGCTGTCGCGCGC TERM 1224 1696959 - 1696983 + r 80 -14.3 -3.18383 | opp_overlap 1696952 1696950 AGGGAACAGCGGGGC CGCGCGACG GCAGCCG CGTCGCGCG TTAGTCAGTGCGGCT RALTA_B1574 1697174 - 1696998 - | hypothetical protein TERM 1225 1697082 - 1697046 - G 89 -7.2 -4.87291 | gap 1 CAGCGCAAGGAAAAA GCGGCCGATATCGC-GC CACC GCAGCGGTACCAGCGGC ATGGCGTGGCGCACC RALTA_B1575 1697993 - 1697283 - | putative transcription regulator, HTH GntR RALTA_B1576 1699066 - 1698065 - | Ferredoxin:Oxidoreductase FAD/NAD(P)-binding TERM 1226 1698948 - 1698923 - G 80 -16.1 -3.14132 | CTGCCCGTCGAGCAA GCGGATGCGGC AGGT GCCGCAGCCGC CCAGCTGGCAGTCGT RALTA_B1577 1699567 - 1699088 - | conserved hypothetical protein; DUF336 betB2 1701041 - 1699596 - | NAD+-dependent betaine aldehyde dehydrogenase TERM 1227 1700916 - 1700880 - G 93 -18 -3.55444 | TTTCCAGCCGGCAAA GGCCGCTGC-CGCGGCCG CCA CGGCCGCGTGC-GCGTCC ACCGCGGACGACGCC RALTA_B1579 1701798 - 1701067 - | putative PQQC-like protein (Coenzyme PQQ synthesis C) RALTA_B1580 1702881 - 1701970 - | Ornithine cyclodeaminase/mu-crystallin, similar to arcB TERM 1228 1702112 - 1702130 + g 81 -2.3 -5.00616 | overlap 1702113 ACCTTGCCGATGACC ACGTCGG CCAGT TCGACGA TTTTTTCCGGCGGCA TERM 1229 1703013 - 1702973 - R 100 -17.6 -3.64703 | gap 2, overlap 1702949 1702974 CGCCCCTCAGGCAAA CGCCGCGCGGCCGAGCACGC CCA GCGCGC-CGGCCGCGCA-CA AGCCCAGCAGCAAGC TERM 1230 1703012 - 1702974 - R 87 -18.9 -2.78679 | gap 2, overlap 1702949 1702973 GCCCCTCAGGCAAAC GCCGCGCGGCCGAGCACGC CCA GCGCGC-CGGCCGCGCA-C AAGCCCAGCAGCAAG RALTA_B1581 1703749 - 1702964 - | putative membrane protein, DUF81 TERM 1231 1703594 - 1703573 - G 81 -7.1 -4.57073 | overlap 1703575 1703576 CAGTTCCGGGAAAAA GATCGCGCC CAGC GGCGCGCAC AGCATGGCAAAGCCA TERM 1232 1703592 - 1703575 - G 70 -8.3 -3.90048 | overlap 1703573 1703576 GTTCCGGGAAAAAGA TCGCGCC CAGC GGCGCGC ACAGCATGGCAAAGC TERM 1233 1704632 - 1704682 + G 70 -15.6 -2.70932 | GCGCCAAGGCCGCCG GCG-CGGCGGTCAGCGCCGCGGT-GG TGG CCGACCGC-GCGCTGGC-GCTGTCGC TGATTACCGGCAGCA RALTA_B1582 1704091 - 1705629 + | hypothetical protein RALTA_B1583 1705688 - 1706023 + | putative Ferredoxin RALTA_B1584 1706025 - 1706342 + | hypothetical protein RALTA_B1585 1706376 - 1706705 + | putative Ferredoxin, 2Fe-2S iron-sulfur cluster binding domain TERM 1234 1706748 - 1706707 - T 75 -13.7 -3.05816 | gap 1, overlap 1706710 CCAGCGGCGACTGAA CCAGCGGTGCGCGCCATCGG GCG CCGATGGCGCGG-CCACTAC CGCCGCCTCGCCCCC TERM 1235 1706745 - 1706710 - T 84 -17.6 -2.75064 | gap 1, overlap 1706707 GCGGCGACTGAACCA GCGGTGCGCGCCATCGG GCG CCGATGGCGCGG-CCAC TACCGCCGCCTCGCC cobT2 1708397 - 1706745 - | cobaltochelatase (cobT subunit) cobS2 1709503 - 1708463 - | Aerobic cobaltochelatase cobS subunit (Hydrogenobyrinic acid a,c-diamide cobaltochelatase cobS subunit) TERM 1236 1709497 - 1709542 + g 79 -14.7 -3.27923 | gap 1, overlap 1709499 1709499 CGCCATCCATGCCAA TCG-GCACGGCGGCAAGCGGAG CAT TTCCGCGTGACGCCGTGCGCTA TTCGTCCTCTTCCGC TERM 1237 1709499 - 1709540 + g 85 -17.3 -3.20307 | gap 1, overlap 1709499 1709497 CCATCCATGCCAATC G-GCACGGCGGCAAGCGGAG CAT TTCCGCGTGACGCCGTGCGC TATTCGTCCTCTTCC TERM 1238 1709499 - 1709539 + g 77 -17.5 -2.51702 | overlap 1709497 1709499 CCATCCATGCCAATC GGCACGGCGGCAAGCGGAG CAT TTCCGCGTGACGCCGTGCG CTATTCGTCCTCTTC RALTA_B1588 1710403 - 1709540 - | putative transcriptional regulator, IclR TERM 1239 1710504 - 1710520 + H 93 -7.3 -5.00616 | TAAACAATAATTTTT TGGAACT TCT GGTTCCA TTTTTTAAGCGAACA gabP 1710723 - 1712159 + | gamma-aminobutyrate transport protein, RpoS-dependent (APC family) TERM 1240 1712164 - 1712204 + F 85 -14.7 -3.65313 | overlap 1712167 ACAAGTATTGATGTG CCACGCGGCGCGCCAGT GCAGTAA GCTGGCGCGCTGTGTCG TTTGCAGTGTCGTTG TERM 1241 1712167 - 1712201 + F 77 -15 -2.93585 | overlap 1712164 AGTATTGATGTGCCA CGCGGCGCGCCAGT GCAGTAA GCTGGCGCGCTGTG TCGTTTGCAGTGTCG RALTA_B1590 1712206 - 1713798 + | putative Aminotransferase regulatory protein, HTH GntR RALTA_B1591 1713938 - 1714339 + | hypothetical protein RALTA_B1592 1714356 - 1715801 + | FAD dependent oxidoreductase, Putative taurine dehydrogenase large subunit RALTA_B1593 1716055 - 1717176 + | hypothetical protein TERM 1242 1717766 - 1717808 + G 79 -5.3 -4.72272 | opp_overlap 1717770 1717772 1717775 GCTGGCGCCCGAGGA CGAAGACGACCGGGCGCTG CGCGC CGGCGGCCAGCCGTATCCG TTTTTCCTGGCCCAC RALTA_B1594 1717173 - 1718846 + | ATP-dependent DNA ligase RALTA_B1595 1718921 - 1721548 + | ATP-dependent DEAD/DEAH box helicase RALTA_B1596 1721545 - 1722252 + | putative metallophosphoesterase RALTA_B1597 1723052 - 1722237 - | putative oxoacyl carrier protein reductase, Short-chain dehydrogenase/reductase SDR TERM 1243 1722858 - 1722870 + g 71 -10.5 -3.8062 | overlap 1722861 CCGGCCCAGCCGGTC CGCCG CGG CGGCG TTCTTGTCCGCGTTG TERM 1244 1723158 - 1723135 - R 85 -14.6 -3.6471 | gap 1, overlap 1723127 GGGGAAATCAGAGAA GCGGGCGTGGC GCC GCCACGC-CGC ACTGCAGCAACGGCA RALTA_B1598 1723502 - 1723236 - | hypothetical protein TERM 1245 1723603 - 1723585 - H 70 -11.6 -3.14647 | ACGCATGACAGGGAA GCCGTGGC GAG GCCCCGGC AATCAACGTGGTCCG TERM 1246 1724985 - 1724965 - g 70 -12.5 -3.28791 | AGCGCTGCTGCACAA GGGGGGTGC GCT GCACACCCC GGGCAGCGTGGAGCG TERM 1247 1725113 - 1725126 + G 72 -3.7 -4.59853 | opp_overlap 1725113, overlap 1725114 TACCTGCTCGATACA CCGGG ATAT CCCGA TTTTTCCGGCCTTGC TERM 1248 1725400 - 1725417 + G 90 -4.8 -5.28176 | GGACTGCTTCTTCAA TCCGGC CGGCGA GTCGGA TTTTTTATCGGTGGC RALTA_B1599 1723687 - 1725444 + | putative transcriptional regulator, LysR family TERM 1249 1726933 - 1726897 - gT 76 -7.1 -4.30576 | overlap 1726899 1726900 1726916 1726929 GGCGCAGCAGGAAAA GATGGCGTCCCGCCACA AGG CGCAGCAGGACACCGAC TGAGCGCGGCCGGAT TERM 1250 1726911 - 1726899 - gT 71 -9.1 -3.7574 | overlap 1726897 1726900 CGCAGCAGGAAAAGA TGGCG TCC CGCCA CAAGGCGCAGCAGGA fusA3 1724873 - 1726936 + | protein chain elongation factor EF-G, GTP-binding (ribosomal translocase) actP 1728623 - 1726959 - | Cation/acetate symporter, SSS family RALTA_B1602 1728928 - 1728620 - | conserved hypothetical protein, DUF485 paaF 1730433 - 1729084 - | phenylacetyl-CoA ligase, phenylacetic acid degradation paaN 1732170 - 1730506 - | aldehyde deshydrogenase, Phenylacetic acid degradation TERM 1251 1731580 - 1731601 + g 73 -7.9 -4.18018 | CACCAGGCCCACGCC GCGCGGCAC CACG GTGTAGCGC TTTTCCATGCGCAGC paaK3 1733451 - 1732375 - | subunit of multicomponent oxygenase, phenylacetic acid degradation, putative 2Fe-2S ferredoxin-NADPH reductase; ring-hydroxylating complex protein 5 TERM 1252 1732546 - 1732597 + g 75 -8.7 -4.20868 | gap 2, opp_overlap 1732533, overlap 1732585 GACGCCGCCCTTGCA GGAGTACGGCAGCTCGATGCCCTGC GCCA GCGCGGCGTCGAGCA-CGGT-CTCC TTGTTCTTTTCCAGC paaJ2 1733993 - 1733469 - | subunit of multicomponent oxygenase, phenylacetic acid degradation; ring-hydroxylating complex protein 4 paaI3 1734742 - 1733990 - | subunit of multicomponent oxygenase, phenylacetic acid degradation; ring-hydroxylating complex protein 3 paaH3 1735037 - 1734756 - | subunit of multicomponent oxygenase, phenylacetic acid degradation; ring-hydroxylating complex protein 2 paaG3 1736092 - 1735094 - | subunit of multicomponent oxygenase, phenylacetic acid degradation; ring-hydroxylating complex protein 1 paaX 1736220 - 1737143 + | Phenylacetic acid degradation operon negative regulatory protein TERM 1253 1737210 - 1737156 - T 75 -11.9 -3.55071 | gap 1, opp_overlap 1737207 1737209, overlap 1737160 TGACATCCCGCGAAA CCCACCGGTCTG-CTCCCCTCTCCCG CGCG CGGGCGAGGGGAGCCTGTGCGGGCGG CGATGGCGCTATCTG TERM 1254 1737206 - 1737160 - T 74 -14.3 -2.64274 | gap 1, overlap 1737156 ATCCCGCGAAACCCA CCGGTCTG-CTCCCCTCTCCCG CGCG CGGGCGAGGGGAGCCTGTGCGG GCGGCGATGGCGCTA boxA 1738519 - 1737239 - | Benzoyl-CoA dioxygenase component A boxB 1739991 - 1738564 - | benzoyl-CoA dioxygenase component B RALTA_B1613 1741749 - 1740055 - | putative Enoyl-CoA hydratase TERM 1255 1741898 - 1741878 - R 74 -12.5 -3.35438 | CAGGACACGTCACAA CGGCATGCG CAA CGCCTGCCG CACCAGCCCACGCAG RALTA_B1614 1742834 - 1741872 - | putative transcriptional regulator, ATP-binding kinase, Helix-turn-helix motif, Shikimate kinase motif TERM 1256 1741994 - 1741980 - G 81 -7 -4.63218 | opp_overlap 1741990, overlap 1741982 CGCCTTGGAATAAAA GGCGGC GCG GCCGGC CAGGATCTGGCGCAG TERM 1257 1742361 - 1742414 + g 70 -14.7 -2.74605 | gap 5, overlap 1742371 1742372 GCCCAGCGTGGTCTT GCC--GGCGCCGCGCAGCCCGATCAGCG CCA CGC-G--CGGGCTGCGCGCCGCCTGGGC TGCATTTTCGCCACC RALTA_B1615 1742924 - 1743388 + | hypothetical protein TERM 1258 1743925 - 1743902 - g 73 -10.2 -3.85698 | gap 1 GGCCTGTGGGAGAAA GCCGCGCCGGC ACT GCTGGCG-GGC GTGCCCGTGATCGTC RALTA_B1616 1743398 - 1744945 + | Aldehyde dehydrogenase RALTA_B1617 1745031 - 1746635 + | Benzoate-CoA ligase RALTA_B1618 1746685 - 1748043 + | Benzoate transporter RALTA_B1619 1748773 - 1748147 - | putative hydrolase ycaC TERM 1259 1748830 - 1748794 - R 100 -20.7 -3.85698 | overlap 1748795 GCTCCTGTGGAGAAA TTGCGGGCGCGGCCGGG ATC CCTGGCCGCGCCCGCGT TGAGAAGCAGTGCCT TERM 1260 1748829 - 1748795 - R 100 -24.2 -2.91276 | overlap 1748794 CTCCTGTGGAGAAAT TGCGGGCGCGGCCGGG ATC CCTGGCCGCGCCCGCG TTGAGAAGCAGTGCC RALTA_B1620 1749536 - 1748859 - | putative hydrolase similar to ycaC TERM 1261 1749260 - 1749294 + g 72 -6.4 -4.29738 | gap 1 CCCAGGCGTTGATCT CGCCCTTGCGTGCGA CGTATT TGGCATGCG-GGGCG TTTTCATGGATCTCG TERM 1262 1749594 - 1749565 - H 78 -9.9 -4.07687 | gap 1, opp_overlap 1749565 ATGCGGTGGGCAAAA CCGGCGG-ACCGGA CCA TCCGGAACCGACGG TGTTGCGAAAGCATA TERM 1263 1749813 - 1749852 + G 78 -9.8 -4.18018 | gap 1, opp_overlap 1749813 GGCGCTGCTGGAAGA GCGCCTGGGCGTGCGCCTG ATC CAG-CGCTCGACACGGCGC TTTTCGGTGACCGAA TERM 1264 1750488 - 1750504 + G 76 -13.7 -3.40597 | overlap 1750486 ATGGTCGGTCAAGGG CGGCGTG ATC CACGCCG TGTTTCCGTCGCGGC RALTA_B1621 1749685 - 1750593 + | putative transcriptional regulator, LysR family RALTA_B1622 1751062 - 1751295 + | hypothetical protein infA 1751390 - 1751611 + | protein chain initiation factor IF-1 TERM 1265 1751631 - 1751657 + F 88 -14.4 -3.72695 | overlap 1751632 GACGTGCCCGCGCCA TGGCATGCGCCG CAG CGGTGCGTGCCG TTTCCTCAACGCCCT TERM 1266 1751632 - 1751656 + F 79 -15.7 -2.83403 | overlap 1751631 ACGTGCCCGCGCCAT GGCATGCGCCG CAG CGGTGCGTGCC GTTTCCTCAACGCCC RALTA_B1624 1751698 - 1751952 + | hypothetical protein TERM 1267 1752017 - 1751967 - T 74 -11.7 -3.53563 | gap 1, opp_overlap 1751968 ATACTGGCGCGCAAA GCGCCGGCGTGCCCGCGCACGACG CCGG CGTTATCC-CTGACGCGCCGGCGC GTCAGCCAAGCACGC RALTA_B1625 1752393 - 1752019 - | hypothetical protein TERM 1268 1752380 - 1752368 - G 89 -3.3 -5.25803 | overlap 1752369 AACGTGCATAAAAAA CCGGA TGA TCCCG TACGCATGTCCATGA RALTA_B1626 1752808 - 1752482 - | hypothetical protein RALTA_B1627 1753175 - 1752876 - | hypothetical protein TERM 1269 1753282 - 1753303 + r 100 -10.1 -5.14965 | opp_overlap 1753284, overlap 1753284 CCGGCCAAAATAAAA AAGCTCCGC GATA GCGGAGCTC TTTTTTCATCGAACT TERM 1270 1753301 - 1753284 - R 100 -12.7 -5.79595 | opp_overlap 1753282 1753284 GGCCAAAATAAAAAA GCTCCGC GATA GCGGAGC TCTTTTTTCATCGAA TERM 1271 1753284 - 1753301 + r 89 -12.7 -4.20707 | opp_overlap 1753284, overlap 1753282 GGCCAAAATAAAAAA GCTCCGC GATA GCGGAGC TCTTTTTTCATCGAA TERM 1272 1753343 - 1753390 + r 82 -14.2 -3.28712 | gap 1, overlap 1753331 1753360 GCGCTCAGCTCAACT GGGTTCGGT-GCGACTCAGATCG GTT CGATCTTGGTTGCGGCCGGGCCC TTCTGGCCGACGCCG cspC 1753560 - 1753357 - | cold shock protein, transcription antiterminator, affects expression of rpoS and uspA RALTA_B1629 1753843 - 1754070 + | hypothetical protein TERM 1273 1754121 - 1754090 - T 79 -15.2 -2.91395 | opp_overlap 1754094 1754096, overlap 1754096 ACCCGCGGCACAAAC GAAAAACCCCGGAC CAGG GTCCGGGGTCTTGC TCACGGCCGGCCCGC TERM 1274 1754094 - 1754117 + T 70 -12.4 -3.14132 | opp_overlap 1754090 1754096, overlap 1754096 GCGGCACAAACGAAA AACCCCGGAC CAGG GTCCGGGGTC TTGCTCACGGCCGGC TERM 1275 1754115 - 1754096 - T 100 -15 -5.04601 | opp_overlap 1754094 1754096, overlap 1754090 GGCACAAACGAAAAA CCCCGGAC CAGG GTCCGGGG TCTTGCTCACGGCCG TERM 1276 1754096 - 1754115 + T 80 -15 -3.13403 | opp_overlap 1754096 1754090, overlap 1754094 GGCACAAACGAAAAA CCCCGGAC CAGG GTCCGGGG TCTTGCTCACGGCCG icd 1756392 - 1754155 - | Isocitrate dehydrogenase [NADP] (Oxalosuccinate decarboxylase) (IDH) TERM 1277 1754550 - 1754593 + g 78 -9.4 -4.25283 | gap 1, opp_overlap 1754566, overlap 1754587 CGTCTTCCAGCGACA CCGCCAGCGCCAGGAACTCGC CCA GCGAATCCCAG-CGCAGGTGG TTTTCCTCCACCAGT TERM 1278 1756562 - 1756613 + r 77 -14.6 -2.88999 | gap 3, overlap 1756550 1756566 1756606 GTTGGCACCCGGCTT GCGG-CGCC-GGATGGCGTTCGTTG CACCT CAACG-GTGCCGTCCAGGCGGCCGC TCTGCTATGTAGGGA RALTA_B1631 1758231 - 1756741 - | chemotaxis sensory transducer protein TERM 1279 1758907 - 1758870 - g 72 -8.3 -4.08216 | gap 1, overlap 1758872 1758901 CCAGGCGCTGGAAAA CATGCGCGCGCTG-GCCG AAA CGGCGCAGAAGGCGCAAG CCGAGGCGCTTGCCG RALTA_B1632 1758607 - 1758999 + | hypothetical protein RALTA_B1633 1759301 - 1758996 - | conserved hypothetical protein; DUF1272 RALTA_B1634 1759454 - 1759699 + | hypothetical protein RALTA_B1635 1759725 - 1760255 + | putative cysteine peptidase, family C39; bacteriocin-processing endopeptidase RALTA_B1636 1760252 - 1761157 + | conserved hypothetical protein; putative exported protein RALTA_B1637 1761184 - 1761612 + | hypothetical protein; putative exported protein TERM 1280 1761653 - 1761628 - f 74 -12.5 -3.27022 | gap 1, overlap 1761629 CGCACGTCAGATTAA CGGGCCGGCGCC ATC GCCGCCGGCC-G CCCGGAACCTTTCAT RALTA_B1638 1761667 - 1761984 + | hypothetical protein; putative membrane protein RALTA_B1639 1761981 - 1762331 + | hypothetical protein; putative membrane protein gdhA1 1763721 - 1762378 - | glutamate dehydrogenase, NADP-specific RALTA_B1641 1764202 - 1764861 + | phenylacetic acid degradation protein (similar to paaA) RALTA_B1642 1764891 - 1766078 + | hypothetical protein RALTA_B1643 1766075 - 1766626 + | hypothetical protein TERM 1281 1767248 - 1767269 + G 80 -15.9 -3.18582 | TCATTTGCGCTACAC GTTGGCGCG TGGC CGCGCCAAC TTCGTCGGTGCGCTG RALTA_B1644 1766619 - 1767869 + | hypothetical protein TERM 1282 1768866 - 1768910 + G 71 -10.1 -3.72968 | overlap 1768870 GCGACCCCGTCGCCA GCATCGTGGCGCT-CGCAGCG GAAAG TGCTGCGCAGTGTCGCG-TGC TTTACCTGTCGTCGT RALTA_B1645 1768139 - 1769461 + | putative amino transferase RALTA_B1646 1769571 - 1770491 + | putative transcriptional Regulator, AraC RALTA_B1647 1771316 - 1770561 - | putative transcriptional regulator, DeoR RALTA_B1648 1773033 - 1771570 - | Aldehyde dehydrogenase RALTA_B1649 1774358 - 1773096 - | Phosphonoacetate hydrolase; 2-phosphonopropionate hydrolase RALTA_B1650 1775158 - 1774436 - | putative transcriptional regulator, GntR family RALTA_B1651 1775405 - 1776457 + | putative ABC transporter, periplasmic solute-binding protein RALTA_B1652 1776551 - 1777693 + | putative ABC transporter, ATP-binding component RALTA_B1653 1777831 - 1779504 + | putative binding-protein-dependent transporter, inner membrane component RALTA_B1654 1779541 - 1780674 + | putative aminotransferase, class V TERM 1283 1780667 - 1780678 + F 85 -3.6 -5.36441 | GGCGGCTGGCGGAGG CGGC GTAA GTCG TTTTTTATCTCCGAC TERM 1284 1780736 - 1780705 - f 86 -16.6 -3.21747 | CGACGCCAGCAGCAA GTTCCCCTCTCCCG CGCG CGGGAGAGGAGAGC AAACAAGCGGGCGTA RALTA_B1655 1780789 - 1781640 + | conserved hypothetical protein; membrane protein; DUF6 TERM 1285 1782657 - 1782644 - g 78 -9.5 -4.18018 | GGTGCTGATGGAAAA CGCGC TGGT GCGCG TGCCGGCGCTAGAAA TERM 1286 1783058 - 1783079 + G 81 -7.9 -4.56597 | opp_overlap 1783058 1783060, overlap 1783060 CAACTTCGGCAGCAA GATGGGCTG GGAG CGGCCCAAC TTTTTCGCGCCGCCG RALTA_B1656 1781730 - 1784210 + | sarcosine deshydrogenase RALTA_B1658 1784523 - 1787357 + | putative xanthine deshydrogenase RALTA_B1659 1787354 - 1787914 + | putative deshydrogenase/oxidoreductase; [2Fe-2S]-binding motif RALTA_B1660 1787932 - 1789197 + | putative Cytochrome c, class I, putative exported protein TERM 1287 1789208 - 1789227 + F 83 -9.2 -4.27617 | ATTGACGACTGACGG CGGCGCGA ATCA TCCCGCCG TTTTGCTCCCCTCTC TERM 1288 1789951 - 1789912 - g 70 -12.1 -3.38768 | gap 1, overlap 1789935 TGAGAGCATCGACAA CGGCAAGCCGGTGCGCGA GACCA CCGC-CGCCGACCTGCCG CTGGCGGTGGACCAC acoD 1789601 - 1791115 + | Acetaldehyde dehydrogenase 2 RALTA_B1662 1791118 - 1791519 + | conserved hypothetical protein; DUF779 RALTA_B1663 1791831 - 1791589 - | hypothetical protein RALTA_B1664 1791985 - 1792995 + | conserved hypothetical protein; putative exported protein TERM 1289 1794119 - 1794137 + G 75 -8.8 -4.12532 | GGCGCTGCGCCAGCC CGGCTCGA CCT TCAAGCCG TTTATCTATGCCGCG mrcB 1793004 - 1795151 + | Penicillin-binding protein; glycosyltransferase TERM 1290 1795456 - 1795482 + G 72 -13.6 -3.24188 | overlap 1795431 GCGCTCGCCGTGCGG CAGGCGCGGGGC TCG GCACCGCGGCTG TTCCTGCTGGTGTAC RALTA_B1666 1795186 - 1796439 + | Arsenical pump membrane protein; oxyanion translocase (similar to arsB) TERM 1291 1796691 - 1796720 + G 71 -10.7 -3.63837 | gap 1, opp_overlap 1796662 1796663, overlap 1796692 1796693 TTGGCAGCGGCCGGG TGCC-GGCAGCCTG CAA CGGGCTGCCGGGTG TTGTTCAGACATTAT TERM 1292 1796692 - 1796718 + G 84 -15.8 -3.39556 | opp_overlap 1796662 1796663, overlap 1796691 1796693 TGGCAGCGGCCGGGT GCCGGCAGCCTG CAA CGGGCTGCCGGG TGTTGTTCAGACATT TERM 1293 1796693 - 1796717 + G 79 -19.3 -2.63252 | opp_overlap 1796663, overlap 1796692 1796691 GGCAGCGGCCGGGTG CCGGCAGCCTG CAA CGGGCTGCCGG GTGTTGTTCAGACAT RALTA_B1668 1796573 - 1796860 + | hypothetical protein RALTA_B1670 1796937 - 1797683 + | GTP cyclohydrolase I RALTA_B1671 1797762 - 1798205 + | putative blue-light sensor, BluF domain TERM 1294 1798227 - 1798210 - T 74 -14.1 -2.91264 | GCCGGCACTGAGACA CGCCGGC GAGC GCCGGCG CGGCGCTACACCGTG RALTA_B1672 1798487 - 1798233 - | hypothetical protein TERM 1295 1798603 - 1798565 - H 91 -18.2 -3.18264 | opp_overlap 1798563, overlap 1798568 GGCGCCACGCATGAA GCAGGACGCGCC-CCGGC ATCCG GCCGGCGGCGCG-CCCGC ACTCTCCTGGGACTT TERM 1296 1798601 - 1798568 - H 90 -19.6 -2.79098 | gap 1, opp_overlap 1798563, overlap 1798565 GCCACGCATGAAGCA GGACGCGCC-CCGGC ATCCG GCCGGCGGCGCGCCC GCACTCTCCTGGGAC TERM 1297 1798694 - 1798661 - H 73 -13.1 -3.15544 | gap 1 GGTCACCGCGACGAA CGGC-GCCGGTGCGTG CTG CACGGACTGGCTGCCG CAATTCGGGCACGGT RALTA_B1673 1798673 - 1798849 + | hypothetical protein RALTA_B1674 1799176 - 1799847 + | putative transcriptional regulator, signal receiver N-trem domain,LuxR C-term domain RALTA_B1675 1799883 - 1802522 + | two-component sensor protein histidine kinase TERM 1298 1803844 - 1803787 - g 85 -16.2 -3.62046 | overlap 1803822 CCAGTCCCCCAACAA CCGCGCCATGATCGGCGCCACC-CCGCG CGAA CGCAGCGGCGGCGCC-AGCGGGGCGCAG GCTACGACGCGGCTG RALTA_B1676 1802633 - 1804045 + | putative transport protein (MFS family) RALTA_B1677 1805015 - 1804068 - | conserved hypothetical protein; UPF0065 TERM 1299 1804827 - 1804839 + g 71 -10.5 -3.78934 | overlap 1804809 GGCGCCGATGTTGCC GCCCG CGC CGGGC TTGTTGTCGACCACC TERM 1300 1805062 - 1805087 + r 77 -13.9 -3.28712 | overlap 1805063 GGATGCTCCTCCGGT TGCGCGCGGCT GCGT GGCCGCGCGCC TTGTGAAGGCGGCGG TERM 1301 1805063 - 1805086 + r 83 -17.4 -2.57132 | overlap 1805062 GATGCTCCTCCGGTT GCGCGCGGCT GCGT GGCCGCGCGC CTTGTGAAGGCGGCG RALTA_B1678 1805927 - 1805142 - | putative NAD(P)-dependent oxidoreductase; Short-chain dehydrogenase/reductase (SDR) family RALTA_B1679 1806943 - 1806002 - | putative transcriptional regulator,HTH IclR TERM 1302 1806064 - 1806047 - G 78 -14.1 -3.64703 | CTGCGCGGAGGCAAA GCGCGCG GTTG CGCGCGC GCCGCCAGGCTGCCA TERM 1303 1806298 - 1806269 - G 87 -17.1 -3.35798 | ATGCGCCACGCAGAA CCCGCGCTGCGCA TGGT CGCGCAGCGCGCG CTCCACCCCCGCGCG RALTA_B1680 1807007 - 1807216 + | hypothetical protein TERM 1304 1807337 - 1807321 - f 91 -5.7 -5.36441 | GTCGGACATAAAAAA GGCGGAG ACC CCCGGCC CGTTCATCCGCGGGC TERM 1305 1807731 - 1807715 - g 72 -3.6 -4.62069 | CGTCCATTCGAAAAA CCGGCT GCTGT ACCCGG AATACCGTGCGCCGG fdnG 1807380 - 1809392 + | Formate dehydrogenase, nitrate-inducible, major subunit (Formate dehydrogenase-N alpha subunit) (FDH-N alpha subunit) (Anaerobic formate dehydrogenase major subunit) TERM 1306 1810049 - 1810008 - g 74 -13.7 -3.35996 | gap 1, overlap 1810032 1810035 CACGGTCACCCACAA CCCGACCGC-GCGCATCTTC CAG AACGATGCGCAGCGGCTGGG CAACCGCACCGACTT fdoG 1809415 - 1810464 + | Formate dehydrogenase-N major subunit, anaerobic; selenopeptide TERM 1307 1811269 - 1811232 - g 78 -14 -3.54919 | opp_overlap 1811250 1811251 AAGGATGGCCTGAAA CCCACCGCCGCGGTCG TCGGCG CGGCCGCGGTCGTGGG CATGGCCGCGCATTT fdoH 1810461 - 1811375 + | Formate dehydrogenase, nitrate-inducible, iron-sulfur subunit(beta subunit) fdoI 1811372 - 1812037 + | formate dehydrogenase-N, cytochrome B556(Fdn) gamma subunit, nitrate-inducible fdoE 1812052 - 1812897 + | Formate dehydrogenase accessory protein TERM 1308 1813494 - 1813455 - g 73 -7.8 -4.1899 | gap 1, overlap 1813456 CGACGGCACCGAAAA TCCGACCGGCCGCGAAGCC GCG GGCTTCACGGT-AATCGGG GAAGAAGACGCCGGG TERM 1309 1813864 - 1813884 + G 83 -12.5 -4.07877 | opp_overlap 1813842 CTGCTCGATTTCAGC CGGGCCGTC ACC GGCGGCCTG TTCTTTGTCCCGTCG RALTA_B1686 1812985 - 1813947 + | putative peroxidase, Dyp-type RALTA_B1687 1814227 - 1814030 - | hypothetical protein RALTA_B1688 1817075 - 1814286 - | ATP-dependent protease TERM 1310 1817156 - 1817121 - R 100 -18.2 -3.91084 | TCAGCGTCAACGAAA CGCCGCGGCACGCCGC CGGT GCGGCTTGCAACGGCG CGTGGAATCAAGGAA cbbBc 1819463 - 1817190 - | formate dehydrogenase (RUBISCO operon); similar to E.coli ydeP related to acid resistance TERM 1311 1818105 - 1818090 - G 78 -10.4 -4.18018 | overlap 1818093 TCCGCCCAGGCAAAA CAGCGC CCTG GCGCTG CCGTCGATCATCGCC cbbA 1820731 - 1819694 - | FRUCTOSE-BISPHOSPHATE ALDOLASE (RUBISCO operon) cbbK 1822008 - 1820770 - | phosphoglycerate kinase (RUBISCO operon) TERM 1312 1821756 - 1821712 - G 74 -14.3 -3.30441 | opp_overlap 1821713, overlap 1821681 1821713 CAGCAGCTCCGACAA GCGGC-GCCCCACCGGCGCCA GGCTG TGGCGCGGGTCGGGCTGCC-C TTCCTCGGGCCGGCC TERM 1313 1821713 - 1821756 + g 77 -14.5 -3.14132 | gap 1, opp_overlap 1821681 1821712 1821713 AGCAGCTCCGACAAG CGGC-GCCCCACCGGCGCCA GGCTG TGGCGCGGGTCGGGCTGCCC TTCCTCGGGCCGGCC TERM 1314 1821957 - 1821907 - G 70 -13 -3.33696 | overlap 1821909 GTCGGCGCGAATGAA GACGCGCTTGCCGGCCAGCCCGCC ATT GGCGAGCAGCGCGGCCAGCGTGTG CGGCGCCGGGGATGG TERM 1315 1821955 - 1821909 - G 77 -15.6 -3.23853 | overlap 1821907 CGGCGCGAATGAAGA CGCGCTTGCCGGCCAGCCCGCC ATT GGCGAGCAGCGCGGCCAGCGTG TGCGGCGCCGGGGAT cbbG 1823028 - 1822018 - | Glyceraldehyde-3-phosphate dehydrogenase (RUBISCO operon) cbbZ 1823799 - 1823086 - | phosphoglycolate phosphatase, Haloacid dehalogenase-like hydrolase domain (RUBISCO operon) cbbT 1825811 - 1823799 - | transketolase (RUBISCO operon) TERM 1316 1824226 - 1824170 - G 100 -19.4 -4.09685 | overlap 1824171 1824174 GTGCATCGCGCAAAA CGTAGCCG-CCGCGCGCGATCGCGTCGC GCT GCGCCGC-ATCGCGCGCGAACGGCGTCA GCGCCTGGCGCGACA TERM 1317 1824225 - 1824171 - G 87 -20.7 -3.05597 | overlap 1824170 1824174 TGCATCGCGCAAAAC GTAGCCG-CCGCGCGCGATCGCGTCGC GCT GCGCCGC-ATCGCGCGCGAACGGCGTC AGCGCCTGGCGCGAC TERM 1318 1824222 - 1824174 - G 95 -25.4 -2.74784 | overlap 1824171 1824170 ATCGCGCAAAACGTA GCCG-CCGCGCGCGATCGCGTCGC GCT GCGCCGC-ATCGCGCGCGAACGGC GTCAGCGCCTGGCGC TERM 1319 1825779 - 1825758 - G 70 -9.3 -3.85698 | opp_overlap 1825768 1825777, overlap 1825759 GTCGGCGGCGAGAAA GCGCAGCAC GTTG GCGCAGCGC GCCGCGGAGTCGATG cbbP 1826699 - 1825821 - | Phosphoribulokinase (Phosphopentokinase) (PRKase) (RUBISCO operon) cbbF 1827804 - 1826710 - | fructose 1,6-bisphosphatase (RUBISCO operon) cbbE 1828558 - 1827857 - | D-ribulose-5-phosphate 3-epimerase (RUBISCO operon) cbbY 1829324 - 1828560 - | Protein cbbY of unknown function (RUBISCO operon); HAD hydrolase family cbbX 1830206 - 1829328 - | Protein cbbX of unknown function (RUBISCO operon); AAA ATPase domain TERM 1320 1830030 - 1830069 + g 79 -15.6 -3.28712 | gap 1, opp_overlap 1830023 GAAGCACATGTGCAG GCTGGGCGCGCCCGCGCTG AAG CCGCGCGCG-GCGCGCAGC TTGTCCACCAGCAGC TERM 1321 1830454 - 1830510 + r 82 -14.5 -3.25823 | gap 3 GTAGCGGCTGCCCTC GGGCCGGGCCTGCACGGCGTAGCT-CTC GATC GAGTAGC-GCAGCGTGC-GGCCCGGCTC TTCCTGTCGCACCAG cbbS 1830855 - 1830436 - | Ribulose bisphosphate carboxylase (RuBisCO), small subunit cbbL 1832364 - 1830904 - | Ribulose bisphosphate carboxylase (RuBisCO), large subunit cbbR 1832692 - 1833645 + | HTH-type transcriptional regulator cfxR (RuBisCO operon transcriptional regulator; LysR family RALTA_B1704 1833759 - 1834100 + | hypothetical protein TERM 1322 1834175 - 1834146 - T 76 -12.9 -3.42996 | gap 1 CACCAGGTACGACAA GCGAGCGGAGGTAC AGT GTGC-TCCGCTCGC CCCGTCAGCGTGACA RALTA_B1705 1834569 - 1834216 - | hypothetical protein TERM 1323 1835501 - 1835483 - g 73 -7.4 -4.13945 | overlap 1835484 ACGGCCAGCGCAAAA CTGGACGT GCA ACGCCCAA ACAAGTTGCGGGCGC RALTA_B1706 1835174 - 1836004 + | conserved hypothetical protein; putative periplasmic protein RALTA_B1707 1836016 - 1836546 + | hypothetical protein RALTA_B1709 1836592 - 1838001 + | hypothetical protein RALTA_B1710 1839325 - 1838252 - | conserved hypothetical protein; putative exported protein; DUF534 TERM 1324 1838901 - 1838929 + g 72 -5.9 -4.31692 | overlap 1838905 GGGTCTGCAACGATT GAGGCTACGATCG GAA CGGTCGTAGTGGC TTTTCGTGCTGCGTT RALTA_B1712 1839636 - 1840142 + | hypothetical protein TERM 1325 1840679 - 1840650 - g 72 -3.5 -4.62336 | opp_overlap 1840652, overlap 1840651 1840652 ACTCGACTGGAAAAA TGCCCGATGCCAT GGCG ATGGCATCGAAGT TCATCGACGAATTCG RALTA_B1713 1840358 - 1841293 + | conserved hypothetical protein; putative exported protein; alpha/beta hydrolase fold TERM 1326 1841373 - 1841354 - T 81 -13.6 -3.5393 | opp_overlap 1841354 ATGATCGGTCGCAAA GGGGCAAC CCCT GTTGCCCC AGTGGACATGGAAAC RALTA_B1714 1842221 - 1841424 - | Non-heme haloperoxidase RALTA_B1715 1842579 - 1843529 + | putative HTH transcriptional regulator; AraC family TERM 1327 1843984 - 1844023 + G 73 -10.6 -3.86202 | opp_overlap 1843967 CGACCGGCGCAACTG GCCGCCATTCGATCCTGC AACC GCAGGAACATATCGCGGC TTTGGTCTGCTCAAC aacC2 1843736 - 1844551 + | Aminoglycoside N(3')-acetyltransferase III (Gentamicin-(3)-N-acetyl-transferase) RALTA_B1717 1845513 - 1844749 - | oxidoreductase RALTA_B1719 1845636 - 1846574 + | putative transcriptional regulator, LysR RALTA_B1720 1846731 - 1847534 + | putative oxidoreductase protein RALTA_B1721 1849746 - 1847692 - | Histidine kinase of the two-component signal transduction system TERM 1328 1848738 - 1848748 + g 71 -2.4 -4.62783 | opp_overlap 1848721 1848724 GGCCGACCAGCACGC CCAG CGC CAGG TTTTTGGCCTGGCTG RALTA_B1722 1851176 - 1849743 - | response regulator in two-component regulatory system; sigma54 interaction domain TERM 1329 1851690 - 1851706 + G 72 -9.3 -4.07568 | opp_overlap 1851682 1851687 CCACCAACACGAGCA GCGCGCG CCC CTCGCGC TTTTCCAAGGAGGCC RALTA_B1723 1851626 - 1853053 + | putative transporter, Major facilitator superfamily cydA 1853523 - 1854962 + | Cytochrome bd ubiquinol oxidase, subunit I cytB 1854967 - 1855983 + | Cytochrome bd ubiquinol oxidase, subunit II TERM 1330 1856031 - 1856006 - g 74 -11.1 -3.7941 | gap 1 GACTGCGCACAAGAA GGCGAGCGCACC GCT GGCG-GCCCGCC TCGGCTGGCTGCTGG RALTA_B1727 1855983 - 1856132 + | conserved hypothetical protein; putative exported protein; Cytochrome bd ubiquinol oxidase associated sequence TERM 1331 1857067 - 1857125 + G 74 -15.9 -2.71011 | gap 2 CTCGTCGCGCCCGCC GCCGT-CGTGGTACCCGGCGGGC-CGGGC ACC GGCCGCGCCCGCCGACTGGCACGCGCGGC TGGTTGCGGCGGCCT TERM 1332 1857622 - 1857660 + G 73 -7.2 -4.10855 | overlap 1857603 1857623 1857651 1857652 GCTGGCCGTGACCGC GGCGTCGTTCCCAGGGCC GCA GAACCTGGGGACGGCGAG TTTTGCCGGCATTTT RALTA_B1728 1856192 - 1858210 + | putative transporter RALTA_B1729 1858197 - 1858409 + | conserved hypothetical protein; associated to putative secretion protein and putative transporter RALTA_B1730 1858406 - 1859236 + | putative Secretion protein; HlyD family moaA 1859387 - 1860463 + | MOLYBDENUM COFACTOR BIOSYNTHESIS PROTEIN A RALTA_B1732 1860749 - 1860489 - | putative DNA-binding protein RALTA_B1733 1862196 - 1860751 - | amino transferase transcriptional regulator,HTH GntR moeA3 1863480 - 1862269 - | Molybdopterin biosynthesis protein moeA TERM 1333 1862516 - 1862461 - G 74 -13.4 -3.30124 | gap 4 GCCCACGCGCCAGAA CGCGTC-GCCGCGGTGCGGACGCGTGCC CGCG AGCGC-CGCCCGCACC-CGGCCGAC-CG GCGGAAACAGCTCGG fdhD2 1864319 - 1863474 - | formate dehydrogenase accessory protein fdhD2 fdhA2 1866877 - 1864550 - | formate dehydrogenase similar to ydeP, related to acid resistance with formate dehydrogenase/DMSO reductase TERM 1334 1864913 - 1864964 + g 72 -14.6 -2.8474 | gap 2, overlap 1864910 1864915 CGAGCGCGTGGTCAT CATCACCATCAGCCG-GT-CGCCA TACTGC TGGCGCGCACGGCTGATGGGGGTG TCCTTGTCGATGCGG TERM 1335 1867758 - 1867784 + G 79 -10.8 -4.10164 | CCATTGTGCTTTCGT TGGCCATCCCGT GGG GCGGGGTTGCCA TTTATGTCCTGGTCG RALTA_B1737 1867277 - 1867852 + | conserved hypothetical protein; membrane; DUF1211 RALTA_B1738 1868989 - 1867982 - | conserved hypothetical protein; UPF0065 RALTA_B1739 1870043 - 1869114 - | putative citrate lyase/aldolase TERM 1336 1869591 - 1869615 + g 70 -12.1 -3.2827 | overlap 1869585 GCATTCCAGCCGCGG CGTCGACGCCG CGA TGGCTTCGACG TTCATCATTGCCTCG TERM 1337 1869888 - 1869903 + g 73 -7.5 -4.18018 | CGCATCGACGATCTT GCGCC GGGCCG GGCGC TTTTCGCTGGGCGCG TERM 1338 1870011 - 1870030 + g 70 -4.2 -4.4767 | gap 1, overlap 1870014 TGGCACCGACAGCTG GCA-GCGGC GTA GCCGCTTGA TTTTCTCCTGCATGA TERM 1339 1870014 - 1870026 + g 71 -10.5 -3.77302 | overlap 1870011 CACCGACAGCTGGCA GCGGC GTA GCCGC TTGATTTTCTCCTGC RALTA_B1740 1871341 - 1870100 - | putative Formyl-CoA transferase RALTA_B1741 1871826 - 1871338 - | hypothetical protein RALTA_B1742 1873019 - 1871823 - | putative ACYL COA DEHYDROGENASE OXIDOREDUCTASE PROTEIN RALTA_B1743 1873600 - 1873064 - | hypothetical protein RALTA_B1744 1875045 - 1873597 - | putative dehydratase; 2-methylcitrate dehydratase (PrpD)family TERM 1340 1875086 - 1875050 - H 72 -13.9 -2.78384 | opp_overlap 1875050 1875052, overlap 1875052 1875061 1875062 TGGCGCTGCATCACA TATGTGATGAATGCCGG CCG CTGACATCCATCACATA TGTGATGGATGTGCG TERM 1341 1875128 - 1875174 + H 75 -14.5 -2.80879 | gap 2, overlap 1875140 CCGAAACTTTCTTCC GTGGCCATGCGGGGCGCCCGTGC CGC GCATGGCCGC-T-GCATGGCCGC CTTATTCGCCTTCGT TERM 1342 1875140 - 1875175 + H 84 -13.9 -3.68936 | overlap 1875128 TCCGTGGCCATGCGG GGCGCCCGTGCCGCG CATGGC CGCTGCATGGCCGCC TTATTCGCCTTCGTC TERM 1343 1875389 - 1875361 - g 74 -11.6 -3.72576 | opp_overlap 1875361 1875360 1875380 1875382, overlap 1875379 GCCCCGGCGATGAAA GCCCAGGCCAGG GACAA CCTGGCCAGCGC GTTTGCCGCGCAGCC RALTA_B1745 1875226 - 1876122 + | putative citrate lyase/ aldolase TERM 1344 1876148 - 1876177 + T 77 -2.1 -5.00616 | gap 2, opp_overlap 1876145, overlap 1876146 CGGCGCTCAACAGTC CTGC-G-CCACGG CCAGCA CCGCGGCCAGCAG TTTTTTCCGGCGCGC RALTA_B1746 1876876 - 1876139 - | putative transcriptional regulator, IclR RALTA_B1747 1877545 - 1876997 - | putative transcriptonal regulator, TetR TERM 1345 1877156 - 1877198 + g 79 -7 -4.51174 | gap 1, overlap 1877155 1877159 1877161 GCGGATCTGCCCCAG GGCCTTGGCCT-CGTTGAG CTTGTA CTCGACGTAGGCCATGTTC TTTTCATTGTAGTCG TERM 1346 1877159 - 1877195 + g 81 -9.5 -4.35682 | gap 1, overlap 1877155 1877156 1877161 GATCTGCCCCAGGGC CTTGGCCT-CGTTGAG CTTGTA CTCGACGTAGGCCATG TTCTTTTCATTGTAG TERM 1347 1877161 - 1877193 + g 74 -10.7 -3.76665 | gap 1, overlap 1877155 1877159 1877156 TCTGCCCCAGGGCCT TGGCCT-CGTTGAG CTTGTA CTCGACGTAGGCCA TGTTCTTTTCATTGT RALTA_B1748 1878720 - 1877758 - | conserved hypothetical protein; UPF0065 RALTA_B1749 1879539 - 1878766 - | putative Enoyl-CoA hydratase/isomerase RALTA_B1750 1880698 - 1879541 - | putative Acyl-CoA dehydrogenase RALTA_B1751 1881804 - 1880695 - | putative Acyl-CoA dehydrogenase RALTA_B1752 1881925 - 1883112 + | putative CoA-transferase RALTA_B1753 1885489 - 1883279 - | putative Amylo-alpha-1,6-glucosidase precursor TERM 1348 1883977 - 1883954 - G 71 -11.6 -3.54475 | CGCCGGATCATAGAA CCGCGCGTCG AAGG CGTCGCGCAG CACTTCCGCCCTGGC RALTA_B1754 1886597 - 1885521 - | putative glycosyl transferase TERM 1349 1885653 - 1885632 - G 73 -12.9 -3.53012 | CCGCTCGGCGGTAAA GCGCGCCTC GAAC GCGGCGCGC ACGCCGGCGCGCGGC TERM 1350 1886786 - 1886821 + H 100 -19.2 -3.91084 | gap 1, overlap 1886777 TTACCCGGAGGCGCG GCGGCTC-CTATTTCGC GCT GCGGAATAGCGAGCCGC TTTCCTTGACGGTGC TERM 1351 1887164 - 1887198 + H 72 -4.1 -4.57569 | gap 1, opp_overlap 1887169 1887171, overlap 1887164 1887165 1887168 CTGGCGCCGCCGCGA CGGAACACGCG-CGGC CATT GCCGCCGCGTGCCTGG TTTTTCGAACCGTAC TERM 1352 1887193 - 1887169 - H 75 -13.6 -3.05384 | gap 1, opp_overlap 1887168 1887165 1887164 1887164, overlap 1887171 GCCGCCGCGACGGAA CACGCG-CGGC CATT GCCGCCGCGTG CCTGGTTTTTCGAAC livH3 1887231 - 1888088 + | high-affinity branched-chain amino acid transport protein, livHM family livM3 1888101 - 1889147 + | high-affinity branched-chain amino acid transport, Inner-membrane translocator, livHM family livG3 1889140 - 1889904 + | high-affinity branched-chain amino acid transport protein (ABC superfamily, atp_bind) livF3 1889894 - 1890598 + | high-affinity branched-chain amino acid transport protein (ABC superfamily, atp_bind) livK2 1890733 - 1891905 + | high-affinity branched-chain amino acid transport protein, ligand-binding receptor TERM 1353 1891970 - 1891943 - T 100 -22.8 -3.73224 | opp_overlap 1891943 GCACCGCGTAGCAAA CCCCGGCATGCC GACA GGCATGCCGGGG TTTTTCATTGCGGCG TERM 1354 1891943 - 1891970 + T 100 -22.8 -4.8622 | opp_overlap 1891943 GCACCGCGTAGCAAA CCCCGGCATGCC GACA GGCATGCCGGGG TTTTTCATTGCGGCG RALTA_B1761 1894723 - 1891997 - | hypothetical protein TERM 1355 1892805 - 1892821 + g 77 -15.1 -3.15544 | ATCTCCTGCGACTGG CGCCCCG CAT CGGGGCG TTCCTGCCCGTCGGC TERM 1356 1893183 - 1893221 + g 74 -16.7 -2.70932 | gap 2 GCCTGGCTCATGCGC ACGTCCGGCACCGGCCGTG CGT CGCGGCCGG-GCCGG-CGC TCGTTGCCGCCGCGC RALTA_B1762 1896398 - 1895070 - | putative diguanylate cyclase(GGDEF domain) and c-di-GMP phosphodiesterase (EAL domain) TERM 1357 1895622 - 1895589 - G 84 -15.9 -3.53012 | overlap 1895590 CGGCGGCCGTGGAAA CGCCAGCGCCCAGGC ACGG GCCTGGGCGCACGCA GTCTGCAGCAGCCAC TERM 1358 1895621 - 1895590 - G 78 -17.2 -2.71712 | overlap 1895589 GGCGGCCGTGGAAAC GCCAGCGCCCAGGC ACGG GCCTGGGCGCACGC AGTCTGCAGCAGCCA TERM 1359 1895707 - 1895686 - G 78 -12.9 -3.72695 | overlap 1895702 AGCGCGTCGATGAAA GCGGCCGGC GACA GCAGGCCGC GGGTGGGATGGCGCC RALTA_B1763 1896638 - 1898290 + | Methyl-accepting chemotaxis sensory transducer, Histidine kinase RALTA_B1764 1898315 - 1898806 + | chemotaxis signal transducer, CheW-like protein TERM 1360 1899229 - 1899206 - g 70 -15.2 -2.6927 | overlap 1899203 ACGCGGTAGACATCA GCGCGCGTGC GCTG GCCCGCGCGC GCCAGGGGCAATACG RALTA_B1765 1898803 - 1900110 + | chemotaxis receptor methyltransferase RALTA_B1766 1900103 - 1900825 + | signal transducer, CheW-like protein TERM 1361 1901504 - 1901478 - g 79 -11.5 -4.09739 | gap 1, overlap 1901479 CGAATCGCTGCAAAA GGCGCG-GCGCC AGCA GGCGCGCGCGCT GCGCGCGGCCGACAC TERM 1362 1901503 - 1901479 - g 74 -15 -3.05522 | gap 1, overlap 1901478 GAATCGCTGCAAAAG GCGCG-GCGCC AGCA GGCGCGCGCGC TGCGCGCGGCCGACA RALTA_B1767 1900822 - 1903137 + | Response regulator receiver ATP-binding histidine kinase, cheA family RALTA_B1768 1903134 - 1904171 + | Chemotaxis response regulator methylesterase, CheB type TERM 1363 1904575 - 1904556 - g 77 -11.4 -3.83844 | gap 1, opp_overlap 1904556 1904555, overlap 1904567 TCGACCAAGGAAGAA GCCGCGACC AAG GG-CGCGGC CTTTGCCGCCGGCGC RALTA_B1769 1904220 - 1905260 + | Response regulator receiver, putative diguanylate cyclase (GGDEF domain) RALTA_B1770 1905301 - 1905498 + | hypothetical protein TERM 1364 1905542 - 1905502 - f 72 -11.8 -3.34534 | gap 2, opp_overlap 1905501 1905525, overlap 1905496 1905494 CATACCAGATAGCAA CTGGCCACGCGGCCGCCGCG ATC CGCGCCGGC-ATG-GGCCAG CTCGTCTCTGACTCT TERM 1365 1905777 - 1905747 - g 70 -12.6 -3.29144 | overlap 1905748 CGACGTGCTGCAGAA CGGCTCGCTGACCA GCA TGGTCAACAAGCCC TACAAATTCGTCTCG TERM 1366 1905776 - 1905748 - g 73 -16.1 -2.57344 | overlap 1905747 GACGTGCTGCAGAAC GGCTCGCTGACCA GCA TGGTCAACAAGCC CTACAAATTCGTCTC RALTA_B1771 1905577 - 1906359 + | hypothetical protein TERM 1367 1906401 - 1906426 + T 100 -20.5 -5.41143 | CGGGCAGCATGCGCG GAGGCCGGTCC AGAG GGACCGGCCTC TTTTTTTCAGGGCTC RALTA_B1772 1906759 - 1906433 - | hypothetical protein TERM 1368 1906906 - 1906885 - R 100 -13 -4.86731 | opp_overlap 1906875 GCCCGCGAAAGAAAA CGGGGTGC GCGAAG GCACCCCG AAAGCTTGCGTTGCT RALTA_B1773 1908473 - 1906971 - | conserved hypothetical protein, DUF112; putative TRANSMEMBRANE PROTEIN TERM 1369 1908166 - 1908124 - G 73 -7.5 -4.1552 | gap 1, opp_overlap 1908155, overlap 1908126 CAGCCGGCGAAGAAA GAGCCCAGGCCCGCGGTGGC CAGC GCCACCCCGG-CGCGGCCGC GCCGCGCCATCTGGT RALTA_B1774 1908909 - 1908487 - | conserved hypothetical protein, DUF1468; putative TRANSMEMBRANE PROTEIN TERM 1370 1909184 - 1909166 - R 86 -4.6 -5.21709 | opp_overlap 1909166 1909170, overlap 1909170 CGCGATACGAAAAAA TAGATCAC GTT GTGATGTA TTTTTTCGAAAAAAG TERM 1371 1909166 - 1909184 + r 83 -4.6 -5.00616 | opp_overlap 1909166 1909170, overlap 1909170 CGCGATACGAAAAAA TAGATCAC GTT GTGATGTA TTTTTTCGAAAAAAG TERM 1372 1909291 - 1909237 - R 100 -17.1 -3.65224 | gap 1, overlap 1909239 1909265 1909280 1909282 ATGTCAGGCGAACAA GACGGCGCGCACCCTTGCATCAACGC AAGG GCGCGGCCGCAAAGACGCGCGCCG-C TACCGGACCGGCGGG TERM 1373 1909290 - 1909239 - R 100 -20.8 -3.40611 | overlap 1909237 1909265 1909280 1909282 GTCAGGCGAACAAGA CGGCGCGCACCCTTGCATCAACGC AAGG GCGCGGCCGCAAAGACGCGCGCCG CTACCGGACCGGCGG RALTA_B1775 1910883 - 1909393 - | putative multidrug efflux pump RALTA_B1776 1911317 - 1912099 + | putative integral membrane signalling protein, MHYT sensor domain TERM 1374 1912429 - 1912402 - g 71 -11.3 -3.66772 | overlap 1912428 CGAAAGCTGGAAGAA GACCTCGCCGC TCGAAC GCGGCAAGATC CTGCGCCGCGTCGGC gabD3 1912223 - 1913650 + | succinate-semialdehyde dehydrogenase I, NADP-dependent coxQ 1914102 - 1913716 - | bb3-type cytochrome oxidase subunit IV coxP 1914827 - 1914111 - | cytochrome-C oxidase subunit III oxidoreductase protein coxO 1915498 - 1914851 - | Cytochrome c oxidase subunit III coxN 1917252 - 1915495 - | cytochrome c oxidase subunit 1 TERM 1375 1915534 - 1915558 + g 79 -15.7 -3.30124 | ATGCGGTTCAGGCTC CGCGCCGCC CTCTTCT GGCGGCGCG TTCTGCGCGATAAAG coxM 1918627 - 1917263 - | Cytochrome c oxidase, subunit II:Cytochrome c, class I TERM 1376 1917455 - 1917479 + g 70 -12.2 -3.2614 | gap 1 CGCCACCATGCCGGC GTCCG-CGGCA CCGC TGCCGACGGAC TTGATATACGCGGTC TERM 1377 1918796 - 1918764 - R 100 -24.9 -4.8622 | opp_overlap 1918791 CGGCGCAAGGAAAAA GCGGCGGCGGGAACC CTT GGTTCGCGCCGCCGC AGTGATCGTGCCGGC RALTA_B1783 1919336 - 1918833 - | hypothetical protein RALTA_B1784 1919619 - 1919798 + | conserved hypothetical protein, putative membrane protein rubA 1920235 - 1920053 - | RUBREDOXIN RALTA_B1786 1924322 - 1920357 - | conserved hypothetical protein, DUF748 TERM 1378 1920737 - 1920755 + g 77 -3.7 -4.72272 | overlap 1920738 1920741 CACCCGCCTGCGCGT TGTCGCG CTGCT CGCGCCG TTTTTGCTCGGCCAC TERM 1379 1921971 - 1921948 - G 71 -11.8 -3.53563 | gap 1 ACATTGCCGTTGAAA TGCGCGGCAAG CGG CTTGCCG-GCA GGCGCATCGACATTG TERM 1380 1922195 - 1922227 + g 78 -16.9 -3.0263 | CCGCCGCCGGCGTGA GCGGCCAGGCCACCG CGC CGGTGGTCAGGCCGA TATTGCGGAACTGGT TERM 1381 1922380 - 1922432 + g 78 -16.2 -3.05384 | gap 2 GCTCCATTGGCGCCA TTCGCGCTGGCCGCCGCGGCGCGCCG CGG CGCCGCGC-GCGCCTGCT-GCGCGGA TTCCGTCGCCCACAA TERM 1382 1925585 - 1925603 + G 81 -8 -4.57073 | overlap 1925563 GCTGGCCGACCGCAT CGGCGCGC GCC GCACGCTG TTTTTCGGCGGCCTG RALTA_B1787 1924635 - 1925945 + | putative general substrate transporter; Major facilitator superfamily MFS_1 phaZ3 1927218 - 1926130 - | Intracellular poly(3-hydroxybutyrate) depolymerase RALTA_B1789 1928280 - 1927402 - | conserved hypothetical protein; putative exported protein RALTA_B1790 1929624 - 1928284 - | hypothetical protein TERM 1383 1929142 - 1929172 + g 76 -13.2 -3.52787 | CTCGATCTGCACGAC GGTGGTGCCCCCGG AAC TCTGGGTCACCACC TTCTGCTGTTCGGTG RALTA_B1791 1930035 - 1929679 - | conserved hypothetical protein, putative exported protein RALTA_B1792 1930432 - 1930142 - | transposase RALTA_B1794 1931143 - 1932102 + | putative transcriptional regulator, LysR TERM 1384 1932404 - 1932430 + F 100 -18 -4.68103 | TGGGCGTCATTTTTG CGCCGCACGTCG CCC TGGCGTGCGGCG TTTTCTTGACGTTCG RALTA_B1795 1932488 - 1933153 + | putative Response regulator receiver protein, cheY family RALTA_B1796 1933660 - 1933199 - | putative transcriptional regulatory protein, MarR RALTA_B1797 1935287 - 1933692 - | Drug resistance transporter, MFS family; most similar to tcmA (Streptomyces glaucescens) RALTA_B1798 1938351 - 1935469 - | putative autoporter protein, type V secretion system TERM 1385 1938270 - 1938260 - G 82 -8.2 -4.4078 | GCCTTGCAATGAAAA GCGG ATG CCGC CAGCAGCGACGCATA RALTA_B1799 1939634 - 1938666 - | conserved hypothetical protein; UPF0065 TERM 1386 1939234 - 1939215 - G 75 -5.6 -4.57569 | CGAGTCCGCCAAAAA GCGCTGGA TCTC TCCGGCAC GATATTGCGCGCTAT TERM 1387 1939534 - 1939550 + g 71 -2.2 -4.59773 | overlap 1939535 CCGGCAGCCCAGGGC ACGATC AGGCG GATCGG TTTTTCCGGATAGCC RALTA_B1800 1940833 - 1939661 - | putative Pyridoxal-5'-phosphate-dependent enzyme, beta family; putative threonine synthase RALTA_B1801 1940940 - 1941851 + | putative transcriptional regulator,LysR family TERM 1388 1941879 - 1941922 + T 73 -13 -3.18681 | gap 1 ACGGCGCGCGTGCGT CAGGCGGCGTGGCTGCCG-CG TTG CGATGCCAGCCGCTCCGCCAG TTGCTCCAGTTCCGC RALTA_B1802 1945186 - 1941878 - | two-component sensor response receiver component, histidine kinase RALTA_B1803 1945925 - 1945269 - | response regulator in two-component regulatory system, transcriptional regulator LuxR RALTA_B1804 1946770 - 1946174 - | response regulator in two-component regulatory system, transcriptional regulator LuxR RALTA_B1805 1950322 - 1946954 - | two-component sensor response receiver component, histidine kinase TERM 1389 1948498 - 1948508 + g 72 -8.2 -4.07568 | opp_overlap 1948498, overlap 1948474 CGGGATAGCACGACA GGGC CAG GCCC TTTTGCAGCGCAAGC TERM 1390 1948795 - 1948849 + g 95 -18.5 -3.68073 | gap 1 AACGCAATTTGGCGG CGCTGGCCTCGTCGGCGAGCTGGCGC GCCC GCGCCAGCTCGC-GGTGCGCCTCGCG TTCTTCCGTGACGTC TERM 1391 1949900 - 1949852 - G 79 -11.5 -3.96148 | overlap 1949854 1949855 GTCCGCCATCAGAAA CACCGAGCGCACGCCTTGCGGCG CCG CACCCCAGTACGCGCGCTCGAAG ATGGCAAAGCGGATC TERM 1392 1949898 - 1949854 - G 74 -12.7 -3.57406 | overlap 1949852 1949855 CCGCCATCAGAAACA CCGAGCGCACGCCTTGCGGCG CCG CACCCCAGTACGCGCGCTCGA AGATGGCAAAGCGGA htrE 1953072 - 1950493 - | fimbrial biogenesis outer membrane usher protein ecpD 1953964 - 1953206 - | periplasmic pilus chaperone fimA 1954650 - 1954102 - | major type 1 subunit fimbrin (pilin) cpxA 1956437 - 1955028 - | Signal transduction histidine kinase sensor protein; activates cpxR by phosphorylation TERM 1393 1956006 - 1955966 - G 72 -14 -3.15574 | gap 1, overlap 1955964 CGAAGGGCAGGAACA GCAGCAGCACCTCGCTGCC ATCC GGCAGCGCGAT-CGGCTGC GGGTCCCACCATGAC cpxR 1957153 - 1956434 - | response regulator in two-component regulatory system with CpxA, regulates genes involved in folding/degrading periplasmic proteins (OmpR family) TERM 1394 1957253 - 1957231 - H 88 -4.1 -5.27476 | opp_overlap 1957246 GTCAAGAAAACAAAA GCTTTCCAA AGTGA CTGGTAAGC AATTTGCATACACAA TERM 1395 1958305 - 1958288 - g 73 -7.7 -4.1899 | opp_overlap 1958281 CTACCGCAGCGAAAA GTACGCG TTGT CGCATAC CGGCCGCTGGGGCTT RALTA_B1811 1957428 - 1959398 + | TonB-dependent outer membrane iron transport protein (precursor) TERM 1396 1959605 - 1959565 - T 91 -11.8 -4.27584 | gap 1, overlap 1959548 1959553 1959551 1959589 AGCGGGAAGCGAAAA TCCCTTGCGCTCGCCTGCG ACAA CGCGTGCGAGCGCA-GCGA CGCACTCCGTGCCAG TERM 1397 1959842 - 1959814 - T 72 -12.4 -3.30474 | opp_overlap 1959813 1959814 CGCCAGAACCACCAA CGCCGCCTTAGC CAGCC GCTTAGGCGACG CGCTTTTTGGTTACT ISRta3.3 1961145 - 1960120 - | transposase, IS110 family TERM 1398 1961353 - 1961329 - R 76 -5.6 -4.56597 | gap 1, overlap 1961330 1961333 GCGCTCGGCCAAAAA GTGACCCGCCC AGCA GGGCGGAAC-C AGGCGGTTCAAAAGC treF 1963208 - 1961418 - | trehalase TERM 1399 1961535 - 1961561 + g 74 -15 -3.05463 | CTGCAGCGGATACTC GCCGCCGCCCCC TCC GTGGGCGGCGCC TTCGATACGCCGGAT TERM 1400 1962264 - 1962250 - G 82 -3.5 -5.00884 | gap 1 ATGTCCTCCAAAAAA GCCTCC TCGC GG-GGC CATGGGCGGTCGTCC RALTA_B1815 1964758 - 1963334 - | multidrug transport protein, MFS family RALTA_B1816 1967049 - 1964860 - | TonB dependent receptor TERM 1401 1964904 - 1964890 - G 78 -12.8 -3.72324 | CAGCCCGATGAAGAA GCGCCG GCC CGGCGC CGGCTCGAAGTAGCG RALTA_B1817 1967356 - 1967976 + | putative Flavodoxin/nitric oxide synthase TERM 1402 1968026 - 1967968 - T 91 -17.2 -3.33696 | opp_overlap 1968006 GCGGCGCTGAAGGAA GCGGCCTGATCGCAGGGCCGGCCGGG CGCCAGT CCCGGCCGGGCCGGCAAGCGGGGCAC TGGCCCCCGCTGTCC RALTA_B1818 1969030 - 1968071 - | putative transcriptional regulator, lysR hipO 1969092 - 1970321 + | HIPPURATE HYDROLASE TERM 1403 1971089 - 1971058 - g 82 -13.6 -3.73775 | gap 1, overlap 1971059 GCCACCTGGAGGAAA CCGCCGGGGCGCCGG CCG CCGGCGCGCCGG-GC CATGAAGGCGCCGGC TERM 1404 1971088 - 1971059 - g 80 -17.1 -2.84051 | gap 1, overlap 1971058 CCACCTGGAGGAAAC CGCCGGGGCGCCGG CCG CCGGCGCGCCGG-G CCATGAAGGCGCCGG RALTA_B1820 1970385 - 1971707 + | putative general substrate transporter, MFS family RALTA_B1821 1971867 - 1972958 + | chemotaxis sensory transducer, Histidine kinase RALTA_B1822 1974336 - 1972999 - | putative aminotransferase, pyridoxal-phosphate-dependent aminotransferase family RALTA_B1823 1975884 - 1974370 - | N-acyl-D-aspartate deacylase (N-acyl-D-aspartate amidohydrolase) RALTA_B1824 1976888 - 1975911 - | conserved hypothetical protein, UPF0065 RALTA_B1825 1978457 - 1977102 - | putative amidase TERM 1405 1977203 - 1977154 - G 78 -6.3 -4.63218 | opp_overlap 1977163, overlap 1977156 TCCGCCTCAAGAAAA CGGGCCGCCGCCAGCACCA-GGC TCTCTT GCCACGGCGG-GGCGACGACCTG GACGCCCACTGGCAA RALTA_B1826 1978626 - 1978447 - | hypothetical protein TERM 1406 1979441 - 1979421 - R 71 -13.9 -2.64616 | GCGTGACCGACATCA GCGCGCCGG ACA CCGGCCCGC CCAGCACCATGCCCA TERM 1407 1980132 - 1980108 - R 100 -17.9 -4.05788 | opp_overlap 1980110 CGCGCCCAAATGAAA CAGGGCGGCAA TGC CTGCCGCCCTG TCATGATCTGGCCCG TERM 1408 1980110 - 1980130 + r 74 -14 -2.84634 | opp_overlap 1980108 CGCCCAAATGAAACA GGGCGGCA ATGCC TGCCGCCC TGTCATGATCTGGCC RALTA_B1829 1981154 - 1980177 - | putative transcriptional regulator, sensor PAS domain TERM 1409 1981539 - 1981527 - g 72 -6.3 -4.30576 | CTTCGAGCAGGAAAA GAAGA CCA TCTTC GCGCGCAGCTGGGTG TERM 1410 1981750 - 1981728 - g 71 -2 -4.66833 | CGGCAAGGCGAAAAA CGTGATCA CCTGCCC TTATCACG CCTGGTCGTTCGGAC RALTA_B1830 1981426 - 1982547 + | Choline monooxygenase; ring hydroxylating dioxygenase alpha subunit motif gbsA 1982576 - 1984042 + | Betaine aldehyde dehydrogenase betA1 1984129 - 1985859 + | choline dehydrogenase, a flavoprotein RALTA_B1833 1986040 - 1986936 + | conserved hypothetical protein; putative exported protein RALTA_B1834 1986983 - 1987294 + | hypothetical protein TERM 1411 1987388 - 1987378 - f 73 -6.8 -4.29738 | opp_overlap 1987377 CTATACTCACCAAAA CACC GTA GGTG ATCTAATTTACTTTT TERM 1412 1987465 - 1987414 - f 79 -13.6 -3.51232 | overlap 1987410 1987418 CTTTTGGTAAATCAA CAGACCGGGATGCCAGGCGCCC TGCGAATC GGGCAACTGGCAACCCGGGATG ACAACAGGAGACAAC TERM 1413 1987461 - 1987418 - f 89 -17.4 -3.2313 | overlap 1987414 1987410 TGGTAAATCAACAGA CCGGGATGCCAGGCGCCC TGCGAATC GGGCAACTGGCAACCCGG GATGACAACAGGAGA RALTA_B1835 1987633 - 1989291 + | putative amino acid permease TERM 1414 1989300 - 1989326 + F 91 -19.4 -3.06312 | CACCTGATCGCCCTG GGCGGGCCGGCA CCA TGCCGACCCGCC TTCCCTCCCGCATTT TERM 1415 1989641 - 1989594 - g 71 -11.9 -3.61398 | gap 1, opp_overlap 1989599, overlap 1989595 GTGCGGCTGGAAGAA GCCT-CGCGCGGCGGCTCGCGC TTCAT GCACGAACAGGTGCGCGAAGGC GATGAACTGCATATC RALTA_B1836 1989372 - 1990325 + | putative dioxygenase beta subunit; FAD/NAD binding, 2Fe-2S ferredoxin domains RALTA_B1837 1990427 - 1990891 + | conserved hypothetical protein, DUF704 RALTA_B1838 1990884 - 1991231 + | putative transcriptional regulator, HTH arsR family macA 1991365 - 1992579 + | Macrolide-specific efflux protein precursor TERM 1416 1992836 - 1992862 + G 78 -9.5 -4.21439 | gap 2 CCGGAAGCGGCGCTG GCCGAC-T-GGCG CGC CGCCAATGTCGGC TTTATCTTCCAGTTC macB 1992590 - 1993282 + | Macrolide-specific ABC-type efflux ABC TRANSPORTER, ATP-BINDING domain (modular protein) TERM 1417 1994232 - 1994283 + G 73 -12.2 -3.53091 | overlap 1994265 AATCGCTGGCGCTGT GCG-TGGCCGGCGGCGCGCTCGGC ATGCTC GCCACGC-CGCCGGTGGCCAGCGC TTTCAAGCAGGCGGT RALTA_B1842 1993295 - 1994449 + | permease, similar to the macB permease domain (modular protein) TERM 1418 1994515 - 1994554 + G 73 -7.1 -4.1891 | gap 2, overlap 1994515 1994517 GTGGGCCAGGCGCCT CACCACC-GCGCT-GACCG CGGC CGGCCTGGCGCTGGTGGTC TTTGTCTTCGCCACC TERM 1419 1994517 - 1994552 + G 71 -9.7 -3.6944 | gap 2, overlap 1994515 1994515 GGGCCAGGCGCCTCA CCACC-GCGCT-GACCG CGGC CGGCCTGGCGCTGGTGG TCTTTGTCTTCGCCA TERM 1420 1994617 - 1994599 - g 72 -4.4 -4.56597 | overlap 1994601 CGCCGGGCTGAAAAA GACGCTGG TCA CCACCGGC GAGCACGACAACGTG TERM 1421 1995371 - 1995327 - g 90 -17.2 -3.53091 | gap 2, opp_overlap 1995322, overlap 1995328 ACCGGGTGGCGGAAA TCGGCACGCTGCGCGCGCTCGG CTT CC-AGCGCGC-CAGCGTGCTGG CCGCGTTCCTGGCCG TERM 1422 1995370 - 1995328 - g 83 -20.7 -2.71712 | gap 2, opp_overlap 1995322, overlap 1995327 CCGGGTGGCGGAAAT CGGCACGCTGCGCGCGCTCGG CTT CC-AGCGCGC-CAGCGTGCTG GCCGCGTTCCTGGCC TERM 1423 1995513 - 1995541 + G 79 -14.5 -3.35996 | TCCGCTTTATCCTGA CGCCGGCGATTGC GCT GCAGACGCTGGCG TTCTCGATGGCGATG RALTA_B1843 1994465 - 1995631 + | permease, similar to macB permease domain (modular protein) gltS 1995805 - 1997019 + | sodium/glutamate symport carrier protein (glutamate permease) RALTA_B1845 1997021 - 1998583 + | putative uncharacterized transporter, periplasmic component; TRAP type domain RALTA_B1846 1998834 - 1998601 - | hypothetical protein RALTA_B1847 1998997 - 1999470 + | conserved hypothetical protein; putative exported protein chpAK 1999893 - 1999531 - | toxin of a toxin-antitoxin system, endoribonuclease; PemK-like protein chpAI 2000147 - 1999893 - | antitoxin of a toxin-antitoxin system; PemI-like protein TERM 1424 2000303 - 2000281 - R 100 -13.4 -5.59879 | overlap 2000292 2000294 GACAAAGACAAAAAA GGGCCGATCA AGA CGACCGGCCC AACGAACCCCGCAAG TERM 1425 2000386 - 2000352 - R 84 -17.1 -2.72661 | gap 1 TATGAGCGTCAAGCA CCCGCCCGTGCAGGCA TGGG CGCCGGC-CGGGCGGG CATCAGGCAGTCAGA RALTA_B1850 2001470 - 2000403 - | putative PORIN TERM 1426 2001661 - 2001695 + G 73 -7.6 -4.2349 | overlap 2001662 TGTGACCTATGCTTC GCAGCAGCAGGTGGCG CAT CGCCGCCGGCTGGGGG TTTTCCCTGTAACCG RALTA_B1851 2001533 - 2001754 + | hypothetical protein TERM 1427 2003186 - 2003204 + G 72 -8.8 -4.03413 | GGCGCGCCGCCAGCC GGGCTCGA CCT TCAAGCCC TTTGTCTACGGCGCT RALTA_B1852 2001804 - 2004443 + | Peptidoglycan glycosyltransferase RALTA_B1853 2005880 - 2004540 - | conserved hypothetical protein, DUF1501; putative exported protein RALTA_B1854 2007499 - 2005898 - | conserved hypothetical protein, COG5267 TERM 1428 2006499 - 2006480 - G 73 -10.6 -3.91897 | CCGGGCACTGACAAA GCGCGCCG TGGC CGGCTCGC GCGCCAGCATCGACA RALTA_B1855 2007699 - 2008622 + | conserved hypothetical protein; putative membrane protein; DUF6 RALTA_B1856 2008606 - 2009370 + | putative transcriptional regulator, HTH AraC type RALTA_B1857 2009455 - 2010258 + | putative Class I glutamine amidotransferase RALTA_B1858 2011386 - 2010265 - | hypothetical protein TERM 1429 2011773 - 2011755 - g 72 -6.7 -4.25104 | gap 1 CCCTGTCCATGAAAA GCC-TGCC GCTC GGCACGGC CTACACCATCTGGAC sugE2 2011601 - 2011915 + | quarternary ammonium compound transport protein; small multidrug resistance family RALTA_B1860 2012715 - 2012002 - | conserved hypothetical protein; putative exported protein bcsA 2014876 - 2012732 - | glycosyl transferase; catalytic subunit [UDP-forming]of cellulose synthase TERM 1430 2013743 - 2013693 - G 72 -4.7 -4.50761 | gap 2, opp_overlap 2013710 ATGAACGCAAAGAAA CGGGCCATGGCGTACTGCTCGCT CAGGAAC AGCGAGTTGTA-GCCGCG-CCCG AGTTCCAGGTGCACC RALTA_B1862 2015201 - 2015371 + | hypothetical protein RALTA_B1863 2015548 - 2017404 + | putative Peptide-transporting ATPase RALTA_B1864 2018243 - 2017437 - | hypothetical protein TERM 1431 2018334 - 2018314 - R 100 -12.5 -5.08824 | overlap 2018315 TGGCGATCCAAAAAA TGCCCCTGG TGG CCAGGGGCG CCAATGCAGGCGCGG TERM 1432 2018333 - 2018315 - R 91 -16 -3.64812 | overlap 2018314 GGCGATCCAAAAAAT GCCCCTGG TGG CCAGGGGC GCCAATGCAGGCGCG TERM 1433 2018363 - 2018343 - R 71 -13.9 -2.52543 | opp_overlap 2018353 AGGGGCGCCAATGCA GGCGCGGCG GGT CGCCGCGCG GCGTACCGTCAGTGC RALTA_B1865 2019745 - 2018372 - | putative transporter, Major facilitator superfamily (MFS_1) TERM 1434 2019648 - 2019638 - G 82 -6.8 -4.75174 | overlap 2019639 CATCGAATCGAAAAA CCAC GCC GTGG CGATGATGCCGAACA RALTA_B1866 2021183 - 2019909 - | putative Iron-containing alcohol dehydrogenase RALTA_B1867 2021988 - 2021245 - | putative hydrolase, Alpha/beta hydrolase fold RALTA_B1868 2022109 - 2022822 + | putative transcriptional regulator, GntR RALTA_B1869 2023237 - 2022962 - | hypothetical protein RALTA_B1870 2023556 - 2023356 - | hypothetical protein RALTA_B1871 2023859 - 2023572 - | hypothetical protein RALTA_B1872 2024967 - 2024095 - | Citrate synthase RALTA_B1873 2026163 - 2024964 - | putative CoA-transferase; caiB/baiF CoA-transferase family RALTA_B1874 2026312 - 2027130 + | putative transcriptional regulator, IclR RALTA_B1875 2028557 - 2027331 - | amidohydrolase; putative hippurate hydrolase protein (similar to hipO) RALTA_B1876 2029558 - 2028554 - | conserved hypothetical protein; UPF0065 TERM 1435 2029954 - 2030008 + G 86 -19.2 -3.14344 | CCACCGCCATCACCT CGGCGCCATCCGCGTCGGGCTGGG CGCTGGC CCCGGCGCGGTGCTGATGACGCCG TTCCTGCGCCACATG RALTA_B1877 2029685 - 2030596 + | putative transcriptional regulator, LysR RALTA_B1878 2031052 - 2030738 - | hypothetical protein RALTA_B1879 2031605 - 2030871 - | conserved hypothetical protein; putative phosphotyrosine phosphatase TERM 1436 2031753 - 2031725 - H 83 -12.4 -4.07885 | opp_overlap 2031744 GAGGTCTCTTCAAAA CTTGCGCCGAAG TAGTC CTCCGGCGCACG CGAGCCAGTATTGGC RALTA_B1881 2031992 - 2032180 + | hypothetical protein RALTA_B1882 2033044 - 2032163 - | conserved hypothetical protein; possible zinc finger RALTA_B1883 2033838 - 2033071 - | putative NLPA lipoprotein sumF1 2034895 - 2033855 - | Sulfatase-modifying factor 1 precursor (C-alpha-formyglycine-generating enzyme 1); putative exported protein atsA 2036945 - 2034909 - | arylsulfatase precursor TERM 1437 2037174 - 2037191 + r 76 -6.3 -4.41548 | gap 1, overlap 2037171 CATCCAGACTGACGA CTGG-CTG AGC CAGGCCAG TTTTCTGCCGTCTGA RALTA_B1886 2038722 - 2037346 - | conserved hypothetical protein, DUF1254 RALTA_B1887 2040223 - 2039195 - | conserved hypothetical protein, UPF0065 RALTA_B1888 2042741 - 2040270 - | putative Formyl-CoA transferase; L-carnitine dehydratase/bile acid-inducible protein F RALTA_B1889 2046102 - 2042785 - | putative acetylCoA carboxylase, Biotin carboxylase, Pyruvate carboxylase., Propionyl-CoA carboxylase, carboxyl transferase TERM 1438 2045019 - 2045043 + g 79 -14.9 -3.37056 | opp_overlap 2044977 CGAAGCGCTCCAGGC GGCCGTGCGCG GGA CGCGCGAGGCC TTGTGCATCGGTCAT RALTA_B1890 2047713 - 2046163 - | putative Propionyl-CoA carboxylase TERM 1439 2049319 - 2049349 + G 75 -9.6 -4.07568 | AGGAGGCACTGGTCT TCTGCGACGGGCGG ACG CTGCGCGTGGCGGA TTTTGCGCGCGGAGA RALTA_B1891 2047890 - 2049659 + | putative transcriptional regulator, AAA-type ATPase domain, DNA-binding domain, Sigma-54 interaction domain RALTA_B1892 2049754 - 2050089 + | putative transcriptional regulator, ArsR domain RALTA_B1893 2050086 - 2050568 + | putative glyoxalase/bleomycin resistance protein/dioxygenase arsC1 2050692 - 2051186 + | Arsenate reductase; Low molecular weight protein-tyrosine-phosphatase arsB 2051190 - 2052266 + | Arsenite resistance protein RALTA_B1896 2053193 - 2052318 - | putative transcriptional regulator, LysR TERM 1440 2054379 - 2054424 + G 91 -14.6 -3.85698 | gap 2, opp_overlap 2054339, overlap 2054380 GGCTCGTCATCGCCA GCGCCGCGCCGCAGCGCGCCCG CATG CTGGCGCGC-GCG-CGCCGCGA TTTCTCCACCGCGAC TERM 1441 2054380 - 2054423 + G 80 -18.1 -2.91276 | gap 2, opp_overlap 2054339, overlap 2054379 GCTCGTCATCGCCAG CGCCGCGCCGCAGCGCGCCCG CATG CTGGCGCGC-GCG-CGCCGCG ATTTCTCCACCGCGA argH2 2053325 - 2054830 + | Argininosuccinate lyase RALTA_B1898 2054892 - 2055860 + | conserved hypothetical protein, UPF0065 RALTA_B1899 2057781 - 2056060 - | putative amidohydrolase, Metallo-dependent hydrolase domain TERM 1442 2056522 - 2056546 + g 72 -13.6 -3.23853 | gap 1, overlap 2056521 CACGGACAGCCTGGC GC-CGAGCGCG CGCA CGCGCTCGAGC TGTTCCTTGCGGACC RALTA_B1900 2059042 - 2058137 - | putative HTH transcriptional regulator, Sugar isomerase (SIS)domain; RpiR family RALTA_B1901 2059136 - 2060299 + | Glutamate carboxypeptidase; Peptidase, M20/M25/M40 family; similar to Pseudomonas cpg2 RALTA_B1902 2060350 - 2061351 + | conserved hypothetical protein, UPF0065 TERM 1443 2061596 - 2061627 + F 70 -12.9 -2.82834 | overlap 2061599 ATGACGGTAGCGCCG AGCGCCAGGCGCC CCGCTA GGCGCCTGGCTCC TCTCATGATCGGATG TERM 1444 2061599 - 2061624 + F 83 -17.6 -2.67515 | overlap 2061596 ACGGTAGCGCCGAGC GCCAGGCGCC CCGCTA GGCGCCTGGC TCCTCTCATGATCGG TERM 1445 2062596 - 2062577 - g 75 -9.2 -4.18494 | GATCGCCACGGAAAA GCGGCTTG GCAT CACGCCGC CGCAGCCTCTGCTGC RALTA_B1904 2061816 - 2062646 + | high affinity periplasmic solute-binding protein; high affinity transport system RALTA_B1905 2062768 - 2063559 + | putative ABC transporter, permease protein RALTA_B1906 2063549 - 2064361 + | putative ABC transporter, permease protein RALTA_B1907 2064348 - 2065220 + | putative ABC transporter ATP-binding protein RALTA_B1908 2065217 - 2065840 + | hypothetical protein TERM 1446 2066920 - 2066870 - g 71 -9.5 -3.72576 | gap 2 GGGGCGGGTATGAAA GCCTGGCGCTG-GT-CGCCCCGCCG GAA CGGCTGCGCGAACACCGGGCCTGGC AAGGCAATGCATCGG metC 2065837 - 2067018 + | cystathionine beta-lyase, PLP-dependent (beta-cystathionase) RALTA_B1910 2067040 - 2067207 + | hypothetical protein RALTA_B1912 2069534 - 2067342 - | conserved hypothetical protein; 4 Rhodanese-like domains; contains extra N_term COG5553 domain (modular protein) RALTA_B1913 2069787 - 2070773 + | conserved hypothetical protein, UPF0065 RALTA_B1914 2070789 - 2072435 + | conserved hypothetical protein, putative transferase, 4 Rhodanese-like domains RALTA_B1915 2073302 - 2072478 - | putative molybdate transport system substrate-binding protein; extracellular metal-binding protein RALTA_B1916 2073532 - 2074434 + | putative transcriptional regulator, LysR family RALTA_B1917 2074589 - 2075569 + | conserved hypothetical protein, DUF808, putative transmembrane protein TERM 1447 2075878 - 2075909 + T 100 -11.6 -5.58074 | gap 1, overlap 2075880 GTTAATCCCCGCATT TTCCGCCAGTCGCTC CCC GGGC-ACTGGCGGCA TTTTTTTCGTGCTTC TERM 1448 2075880 - 2075907 + T 77 -14.2 -2.94304 | gap 1, overlap 2075878 TAATCCCCGCATTTT CCGCCAGTCGCTC CCC GGGC-ACTGGCGG CATTTTTTTCGTGCT RALTA_B1918 2076131 - 2075991 - | hypothetical protein RALTA_B1919 2077495 - 2076260 - | hypothetical protein RALTA_B1920 2079533 - 2077620 - | putative Adenylate cyclase with Chase2 domain TERM 1449 2079068 - 2079112 + g 95 -19.2 -3.76402 | gap 1 GGGGCGCTGCCAGGT CGGCGGGCCCCGG-CAGCGCG CCAC CGGGCTGGCCGGCGCGCGCCG TTTGCTGCGTCAGGT RALTA_B1921 2080861 - 2079521 - | hypothetical protein; putative exported protein RALTA_B1922 2081098 - 2081817 + | putative cyclic nucleotide-binding regulatory protein RALTA_B1923 2084210 - 2081781 - | putative glycosyltransferase TERM 1450 2084193 - 2084176 - G 90 -12.7 -4.46212 | CCGCCGATGATAAAA GGCACCG GACT CGGTGCC ACGATCGCTACTCTC RALTA_B1924 2085284 - 2084259 - | Putative glycosyltransferase RALTA_B1925 2086855 - 2085281 - | putative methyltransferase TERM 1451 2086075 - 2086133 + g 73 -7.8 -4.12456 | GGCCCGGCACGGGCG GCGCGGTGCGGCGCTCGCCCATGCGCGA CAG TCGCTCATGGGTCAGCTCGGCCGAGAGC TTTTCCAGCTGGTCT wzt 2088128 - 2086845 - | ABC-type transporter, ATPase component, LPS efflux transporter wzm 2088909 - 2088130 - | ABC-2 type transport system permease protein, LPS efflux transporter cpsB 2090440 - 2088944 - | mannose-1-phosphate guanyltransferase, colanic acid synthesis TERM 1452 2090128 - 2090151 + g 91 -21 -3.01712 | GCGCGACCCAGCTCG CCGCCGCGGC AATG GCCGCGGCGG TGTTGCGGCCCACCG prtF 2091935 - 2090427 - | Alkaline protease secretion protein (type I protein secretion outer membrane protein) prtE 2093272 - 2091932 - | Proteases secretion protein prtE prtD 2094993 - 2093284 - | Type I secretion system, ABC transporter ATP-binding TERM 1453 2095585 - 2095628 + r 76 -7.2 -4.31692 | overlap 2095579 TCTGGCACGGAGTGC GTCGCTGCGCTCGCACGCGT TGTC GCGGGGGCGAGCCCACTGGC TTTTGCTGCTCGCTT wbpZ 2096923 - 2095766 - | Glycosyl transferase, group 1 TERM 1454 2095843 - 2095873 + g 81 -7.4 -4.56597 | overlap 2095809 2095844 2095847 TTTCGTATAGTGCGT GATAGCGCCGGCGC ATT GTGCTGGCGCTGAA TTTTTCGACGAAGCG TERM 1455 2095847 - 2095869 + g 72 -14.8 -2.83903 | overlap 2095809 2095844 2095843 GTATAGTGCGTGATA GCGCCGGCGC ATT GTGCTGGCGC TGAATTTTTCGACGA TERM 1456 2097322 - 2097265 - g 73 -16 -2.57132 | opp_overlap 2097268, overlap 2097264 CCGGCGCCGGACAAT GCCGGGCGCGCCGCGGCATGGCGCAC CGCGGC GCGCGGCCTGTTGCGGCGCTCCGGGC TGGCGCACGTCGCCT wbpY 2097091 - 2098263 + | Glycosyl transferase, group 1 RALTA_B1934 2098362 - 2098592 + | hypothetical protein RALTA_B1935 2098589 - 2099026 + | hypothetical protein RALTA_B1936 2099023 - 2100702 + | hypothetical protein RALTA_B1937 2100699 - 2101757 + | putative glycosyl transferase, similar to wxcL, possibly involved in LPS O-antigen synthesis TERM 1457 2101797 - 2101828 + T 100 -4.5 -5.40474 | overlap 2101800 2101801 CGCCAACTTTCCCGT TATCGCCAGGC-TGC CCCC GCACGCCTGGC-ATC TTTTTTTGGGGCGAT TERM 1458 2101800 - 2101826 + T 79 -8.7 -4.34482 | gap 1, overlap 2101797 2101801 CAACTTTCCCGTTAT CGCCAGGC-TGC CCCC GCACGCCTGGCA TCTTTTTTTGGGGCG TERM 1459 2101801 - 2101825 + T 70 -12.2 -3.19966 | gap 1, overlap 2101800 2101797 AACTTTCCCGTTATC GCCAGGC-TGC CCCC GCACGCCTGGC ATCTTTTTTTGGGGC TERM 1460 2102009 - 2102051 + T 83 -9.7 -4.27316 | gap 1, overlap 2102009 TCTGGCACGGAGTGC G-CCGCTGCGCTCGCGCGCG CTAT CGCGGGCGAGCCCAAAGGAC TTTTCCCTTCCGCGG RALTA_B1938 2102421 - 2102149 - | hypothetical protein TERM 1461 2102403 - 2102425 + g 91 -2.7 -5.5112 | gap 1, overlap 2102406 CCTTCATTCCCCGTC GAGCCGTGCT TTGC ATCACGG-TC TTTTTTGTTGGTAAA TERM 1462 2102406 - 2102423 + g 72 -5.5 -4.39002 | overlap 2102403 TCATTCCCCGTCGAG CCGTGCT TTGC ATCACGG TCTTTTTTGTTGGTA TERM 1463 2103136 - 2103108 - g 90 -15.9 -3.68351 | TCTCGATGATCGAAA CCGGTCGGCGCCG GCC CGCCGCCGACCTG CTGCACCGGCTTGCG RALTA_B1939 2102807 - 2103205 + | putative Gp68, phage related putative repressor, similar to bacteriophage phi Gp68 RALTA_B1940 2103493 - 2106681 + | hypothetical protein TERM 1464 2106736 - 2106716 - T 100 -18.3 -3.57144 | opp_overlap 2106716 GCTTGCAGTGGGAAA GGGCTGGCC GCG GGCCAGCCC TTTTTTTCCAGGCGG TERM 1465 2106716 - 2106736 + T 100 -18.3 -5.40072 | opp_overlap 2106716 GCTTGCAGTGGGAAA GGGCTGGCC GCG GGCCAGCCC TTTTTTTCCAGGCGG TERM 1466 2107058 - 2107040 - T 81 -13.8 -3.5944 | AGGCACACGGTCAAA CGGACGCC TGA GGCGCCCG CTTCCCCGTTGCGCC RALTA_B1942 2108015 - 2107092 - | conserved hypothetical protein; Gluconolactonase signature RALTA_B1943 2108944 - 2108030 - | conserved hypothetical protein, UPF0065 RALTA_B1944 2110023 - 2109088 - | putative D-3-phosphoglycerate dehydrogenase RALTA_B1945 2110703 - 2110020 - | putative Dimethylmenaquinone methyltransferase RALTA_B1946 2111737 - 2110760 - | conserved hypothetical protein UPF0065. TERM 1467 2111791 - 2111805 + H 70 -10 -3.54424 | overlap 2111804 TGGTGCATCGTTTCA CGGCAT ACA ATGCCG TTTCACACAGTGCAC RALTA_B1947 2111834 - 2112607 + | putative transcriptional regulator, IclR family TERM 1468 2112799 - 2112832 + F 87 -16.9 -2.87132 | opp_overlap 2112825 GATTAACCTGCCCGC TCTTTTGCGTTTGCG CGCA CGCAAACGCAAAAGC TCTCTGCCCCCGCCG proY 2112898 - 2114277 + | proline transport protein, APC family RALTA_B1949 2114369 - 2115358 + | hypothetical protein TERM 1469 2115904 - 2115932 + G 82 -3.7 -5.06414 | overlap 2115910 GCTGCGACTCGGTGT GGGAACGGCTGGT GGT GCCGGCCTTTGTC TTTTTCTTCGCCAAG TERM 1470 2115910 - 2115926 + G 81 -7.9 -4.64423 | overlap 2115904 ACTCGGTGTGGGAAC GGCTGGT GGT GCCGGCC TTTGTCTTTTTCTTC TERM 1471 2116359 - 2116415 + G 79 -15.1 -3.35679 | overlap 2116361 GCCTACCTGCCGATG CTGCG-CGAGTACCGGCAGCCGTGGTG GCTGG CGCCGCTGCTGCCGGT-CACGGCGCTG TTCTACCTGGCGGCA TERM 1472 2116361 - 2116413 + G 80 -16.3 -3.24924 | overlap 2116359 CTACCTGCCGATGCT GCG-CGAGTACCGGCAGCCGTGGTG GCTGG CGCCGCTGCTGCCGGT-CACGGCGC TGTTCTACCTGGCGG RALTA_B1950 2115381 - 2116511 + | Glycosyl transferase, family 2 RALTA_B1951 2117532 - 2116525 - | putative NAD-dependent epimerase/dehydratase lytB 2117751 - 2118749 + | 4-hydroxy-3-methylbut-2-enyl diphosphate reductase RALTA_B1953 2118770 - 2119942 + | putative enzyme, Radical SAM TERM 1473 2120526 - 2120549 + G 70 -8.8 -3.87149 | gap 1, overlap 2120545 CCGGCGGTGCGCATC GCGCATGCGGG CGG CTCGCG-GCGC TTTGCCTTTGGTGCG TERM 1474 2121118 - 2121105 - g 72 -3.7 -4.63089 | overlap 2121107 GACGGGAAAAAACAA GCCGC CGGC GCCGC CACGAAGTCTTCTCC RALTA_B1954 2119953 - 2121179 + | Putative glycosyl transferase, family 2, similar to mouse Ceramide glucosyltransferase RALTA_B1955 2121176 - 2122600 + | putative oxidoreductase, Radical SAM; similar to Anaerobic Mg-protoporphyrin IX monomethyl ester oxidative cyclase TERM 1475 2123367 - 2123418 + G 100 -22.1 -3.59738 | overlap 2123394 GCTCGCCGCGCTGCT GTCGCCGCGCGTGCGCGCCGCCC TGGAGC GGGCGGCCAGCCGGCGCGGCGGC TTTGCCGATGTGCTC RALTA_B1956 2122612 - 2123466 + | putative phosphatase/phosphotransferase; putative cellobiase RALTA_B1957 2123463 - 2124470 + | hypothetical protein RALTA_B1958 2125134 - 2124490 - | putative ABC-type transport system involved in resistance to organic solvents, auxiliary component TERM 1476 2125231 - 2125277 + H 87 -18.6 -2.79831 | overlap 2125214 GGATCCGCGCGCATC GCGGCCGCTTCCGTGCCGCATG GCG CATGCGGCACGGCGCCAGCCGA TATACTCGCGGTTCG TERM 1477 2126054 - 2126009 - g 71 -11.9 -3.61654 | gap 3, overlap 2125998 TACAGCGACCTGAAA GCCGGCGCCGCGGCCTCGCGCG CGATC CG-GC-AGGCCGCGGC-CGAGC TGCAGCTGGCGCAGC TERM 1478 2126431 - 2126479 + G 93 -16.7 -3.90241 | opp_overlap 2126403, overlap 2126439 2126443 2126446 GGGGCTGGCCGCCCG TGCCGTCGGCG-CGCCGCTGGCG CTGGC CGCC-GCGGCCACGGCGGCGGCA TTCTTCTGCTTCCTG TERM 1479 2126439 - 2126482 + G 74 -13 -3.54029 | gap 1, opp_overlap 2126403, overlap 2126431 2126443 2126446 CCGCCCGTGCCGTCG GCGCGCCGCTGGCGCTGGCCG CCG CGGCCA-CGGCGGCGGCATTC TTCTGCTTCCTGCCC TERM 1480 2126443 - 2126478 + G 82 -19 -2.93422 | gap 1, overlap 2126431 2126439 2126446 CCGTGCCGTCGGCGC GCCGCTGGCGCTGGCCG CCG CGGCCA-CGGCGGCGGC ATTCTTCTGCTTCCT TERM 1481 2126605 - 2126632 + G 93 -17.7 -3.6682 | overlap 2126610 GATCGCCGTGCTCCG GCCCGGCGGCG AGTCCG CGTCGCCGGGC TTTGCCTGGCTGGCG TERM 1482 2127195 - 2127151 - g 75 -5.4 -4.59773 | gap 1 CGCCACGCTGAAAAA GCTGGC-CAGCGCCGATGCGC CCAC GCGCGACCGCGCCGAGCGCGC CATCGCCCTGCCGCT TERM 1483 2127357 - 2127385 + G 77 -14.6 -3.14344 | gap 1 TGCCGCCACCCGGCA GCGCG-CAGCGTG AAGC CGCGCTGGCGCGC TTCATCGCCGCGGTG RALTA_B1959 2125313 - 2127949 + | putative transporter, exporter RND family vacJ 2127989 - 2128786 + | Lipoprotein vacJ precursor RALTA_B1961 2129229 - 2128792 - | putative Peptidylprolyl isomerase, FKBP type; putative exported protein RALTA_B1962 2129447 - 2130781 + | hypothetical protein RALTA_B1963 2130855 - 2131220 + | Conserved Hypothetical protein, putative exported protein RALTA_B1964 2131234 - 2131758 + | hypothetical protein TERM 1484 2131814 - 2131784 - T 78 -6.6 -4.63218 | CGGGCGGCAAGAAAA CGGCCGCAAACGTG GTC CTCAAGCGCGGCCG TCATGCCGGCGTCGG copD 2132753 - 2131815 - | Copper resistance protein D TERM 1485 2132412 - 2132388 - G 85 -16.4 -3.62096 | GGCCAGCACCGCAAA GGGCGCACGC AGCCG GCGCGCGCCC ATGCCGGCCAGCGCG TERM 1486 2132732 - 2132711 - G 75 -10.1 -4.0492 | gap 1, opp_overlap 2132715 2132716 CAAGGTCGAGATAAA GC-GCCAGGC GCA GCCCGGCTGC CAGCCACTCCGGCTG copC 2133140 - 2132754 - | CopC Copper resistance protein precursor, ''E set domains'' superfamily copB 2134218 - 2133190 - | CopB ATPase, Copper resistance protein B precursor TERM 1487 2134192 - 2134156 - G 76 -13.5 -3.53012 | opp_overlap 2134153 2134150 2134185 CGGGTCCTGCGCAAA GGCTGCGCTGATGGCGC CCA GCGCCAGCGCCGCGGCC ACCATGGTTTTCTTG TERM 1488 2134185 - 2134199 + g 81 -3.4 -4.84311 | opp_overlap 2134156, overlap 2134153 2134150 CGCCCAGCGCCAGCG CCGCGG CCA CCATGG TTTTCTTGTGTCCGG copA 2136149 - 2134245 - | CopA Copper-resistance transmembrane precursor, Cupredoxin domains TERM 1489 2136057 - 2136003 - G 73 -12.7 -3.53012 | gap 2 GGCGCTGCCGCCAAA CCCGCCCAGGCCGGCCAGGCCGGCGAC CAC GCCGCCGGC--GGCCAGCCCCTGCACG AAGCGGCGGCGCCGC copR 2136329 - 2137054 + | response regulator in two-component regulatory system with CopS, regulation of copper resistance copS 2137051 - 2138448 + | sensory histidine kinase in two-component regulatory system with CopR, regulation of copper resistance, senses copper ions TERM 1490 2138529 - 2138485 - T 93 -8.3 -5.00616 | overlap 2138486 2138487 GCGGGCCGGAAAAAA GCCGCCCACGCCAGTTACGAC GTT GGGGGAGCTGGCGTGGGCGTG AAGACCACCGGATGC TERM 1491 2138528 - 2138486 - T 75 -11.8 -3.60048 | overlap 2138485 2138487 CGGGCCGGAAAAAAG CCGCCCACGCCAGTTACGAC GTT GGGGGAGCTGGCGTGGGCGT GAAGACCACCGGATG TERM 1492 2138527 - 2138487 - T 78 -15.3 -2.75708 | overlap 2138486 2138485 GGGCCGGAAAAAAGC CGCCCACGCCAGTTACGAC GTT GGGGGAGCTGGCGTGGGCG TGAAGACCACCGGAT RALTA_B1971 2141073 - 2138656 - | putative SENSOR HISTIDINE KINASE with CHASE2 domain RALTA_B1972 2142757 - 2141051 - | conserved hypothetical protein, Peptidoglycan-binding LysM domain; putative membrane protein TERM 1493 2141199 - 2141162 - G 79 -14.7 -3.28712 | gap 1, opp_overlap 2141166 CTGCGGCGCCGAGAA CGCG-GCCGGGTCGGGCG CGA CGCCGGGCGCGGCGCGCG CCACGCGGATGTAGT TERM 1494 2141987 - 2141939 - G 72 -13.9 -3.14211 | gap 3 ATTGGGCGGCAGCAA GGCCGGCGCCGCCAGCAG-CGCCA CCGG TGGCGACAGCTTGC--CGCCGGCC GACACGCCGATGCCA RALTA_B1973 2143475 - 2142750 - | putative Response regulator receiver, cheY family RALTA_B1974 2145076 - 2143706 - | putative TRANSMEMBRANE PROTEIN, COG4267 RALTA_B1975 2146674 - 2145079 - | putative GLYCOSYL TRANSFERASE TERM 1495 2145923 - 2145907 - G 71 -2.1 -4.57073 | CAGGGTTTCGAAAAA GCGCACC CAC AGCTCGC GGAAATAGCTGATCT TERM 1496 2146097 - 2146085 - G 72 -6.9 -4.37092 | opp_overlap 2146094 AGCGCGCCGAGAAAA CCAGC ATA GCCGG TGGAAACGGTGTGGT RALTA_B1976 2147657 - 2146671 - | Conserved Hypothetical protein, putative TRANSMEMBRANE PROTEIN; putative Protein prenylyltransferase TERM 1497 2147595 - 2147565 - G 77 -14.7 -3.14132 | opp_overlap 2147546 2147543 CTGCGTGCCGAGGAA CGCCAGCAGCAGC GCGGT GCTGTTGCCGGCG CGTGCCAGCAGCACC RALTA_B1977 2149089 - 2147650 - | conserved Hypothetical protein, GAF domain; putative TRANSMEMBRANE PROTEIN TERM 1498 2148767 - 2148748 - G 79 -4.8 -4.72272 | opp_overlap 2148764, overlap 2148750 GCCGCCCAGGAAAAA CAGGCGCG GGAA CGGGCCGG TCATCACGCCGGTCT RALTA_B1978 2149718 - 2149155 - | conserved Hypothetical protein, putative outer membrane protein RALTA_B1979 2153852 - 2149773 - | conserved Hypothetical protein; putative Protein prenyltransferase; putative membrane protein TERM 1499 2150458 - 2150481 + gr 95 -19.6 -3.26471 | AGGCCCTCGCGGTAG CCGGCGCTGG CGCG CCAGCGCCGG TTGCTGTCGCGGTAG TERM 1500 2150939 - 2150973 + gr 80 -14.3 -3.17075 | overlap 2150943 GCTGCAAGCGGTTGG CGTACTGGCGCGC CAGCCAGCC GCGCGCCAGTTCG TTCGATTCGGCCGAC TERM 1501 2150943 - 2150969 + gr 74 -12.3 -3.4052 | overlap 2150939 CAAGCGGTTGGCGTA CTGGCGCGC CAGCCAGCC GCGCGCCAG TTCGTTCGATTCGGC TERM 1502 2151670 - 2151644 - GR 71 -13.6 -2.62616 | CCAGCGTCCACAGCA GCGCCGCCAGCG TTT CGCTGTCGGCGT CCGGCAGGCCGGCGG TERM 1503 2151886 - 2151857 - GR 86 -17.9 -2.82516 | gap 1 GCGTGTAGTAGTACA GCGCCAGCTCCAGC GAG GCCGG-GCTGGCGC CGCGGCGCCAGTCGG RALTA_B1980 2156589 - 2153815 - | conserved hypothetical protein, COG3868 TERM 1504 2156625 - 2156584 - GH 74 -14.4 -2.57013 | gap 2, overlap 2156580 GTGCAAGGCAATCGA CGGCAT-CGCCGGG-GCCGG GCCG CCGGCGCCCGGCGCAGGCTG TGCCATGGCGGTTCC TERM 1505 2156679 - 2156658 - H 70 -12.3 -3.19192 | gap 1 CCGCAGCGAAGGCAA GCGCCAGCGC GAC GCGCTG-CGC CAGATGCCCCAGCCA TERM 1506 2157272 - 2157261 - H 77 -2.2 -5.08011 | overlap 2157263 2157264 AAAATTTGTAAAAAA GATG GCAC CACC ATGGAGCGGCCGGCA TERM 1507 2157374 - 2157359 - H 93 -3.2 -5.64873 | CGCAACAATAAAAAA TCAGGG AATT CACTGA ACCGGTACTGAAGTA RALTA_B1981 2157670 - 2157873 + | cold shock protein, transcription antiterminator TERM 1508 2157941 - 2157919 - f 88 -14.8 -3.72576 | opp_overlap 2157919 CCGGCCGGCACGAAA GCCCCGCAGC GTC GTTGCGGGGC TTTTTGTTTTGGCGC TERM 1509 2157919 - 2157941 + F 100 -17 -5.45802 | opp_overlap 2157919 CCGGCCGGCACGAAA GCCCCGCAGC GTC GTTGCGGGGC TTTTTGTTTTGGCGC TERM 1510 2158079 - 2158026 - f 91 -17.3 -3.35679 | gap 1, overlap 2158029 TCGCCCGACCCACAA CCACC-TCCCGGGCGGGACGCGCGCC AAC GCCGCGCGGCCGGCGCGGGATGGTAA GCAGCGTGTCGAGGA TERM 1511 2158075 - 2158029 - f 91 -19.2 -2.8474 | overlap 2158026 CCCGACCCACAACCA CCTCCCGGGCGGGACGCGCGCC AAC GCCGCGCGGCCGGCGCGGGATG GTAAGCAGCGTGTCG TERM 1512 2158873 - 2158928 + G 73 -16.1 -2.65264 | gap 3 CATCCTGGCGCGGCT G-TGCGCGCAAGGCTGGCG-G-GCGCCG CGC CGGCGCGTGCGCCTGCCGCGCGCGCAAC TGCTCTGGATCGTGC crtB 2158073 - 2158963 + | phytoene synthase shc 2159025 - 2161070 + | Squalene hopene cyclase RALTA_B1984 2161067 - 2161759 + | putative nucleoside phosphorylase RALTA_B1985 2163089 - 2161824 - | putative HEAT SHOCK PROTEIN RALTA_B1986 2164419 - 2163172 - | putative diguanylate cyclase, GGDEF domain TERM 1513 2164743 - 2164781 + H 83 -6.7 -4.82901 | gap 2, opp_overlap 2164764 CGCGCAGGGCTGCAG CGTCACC--GCCGCGAG CGAGAAC CACGCGGCATGGTGGCG TTTTTCTGCAACACC RALTA_B1987 2165025 - 2165291 + | hypothetical protein TERM 1514 2165744 - 2165789 + G 70 -13.1 -3.35679 | gap 1 GCGGCGCTGCGCGCA GGCCGACCTGCCGCGCGAGCGC TGC GCGGT-GCGCGTCGGTGCGGCC TTCTGGGTGCGGCAG RALTA_B1988 2165454 - 2165816 + | putative transcriptional regulator RALTA_B1989 2166589 - 2165819 - | Putative methyltransferase RALTA_B1990 2167532 - 2166651 - | putative Binding-protein-dependent transport systems inner membrane component, ABC transporter, permease protein RALTA_B1991 2168384 - 2167548 - | putative taurine transporter, ABC superfamily, atp_binding component RALTA_B1992 2169397 - 2168387 - | putative transporter, periplasmic component tauD3 2170408 - 2169479 - | taurine dioxygenase, 2-oxoglutarate-dependent TERM 1515 2169983 - 2169995 + g 70 -3.3 -4.48987 | overlap 2169945 2169950 TGCATGCAGCAGCGA GCCGA GGC TGGGC TTTTCCTTGTACGAC RALTA_B1994 2171113 - 2170562 - | putative Cytochrome c, class I precursor RALTA_B1995 2172377 - 2171136 - | putative Oxidoreductase, molybdopterin binding TERM 1516 2172166 - 2172194 + g 73 -10.1 -3.85698 | overlap 2172168 GCGCCGGGCACCGGC GCCGCGCTGCGGC TGC GCCGCACCACGTC TTTCTCGAACGGGGA RALTA_B1996 2172593 - 2173723 + | Putative aliphatic sulfonates transporter, periplasmic binding component RALTA_B1997 2173728 - 2174564 + | putative alkanesulfonate transport protein, ABC superfamily, inner membrane component RALTA_B1998 2174577 - 2175374 + | putative alkanesulfonate transport protein, ABC superfamily, inner membrane component tauB2 2175408 - 2176202 + | taurine transport protein (ABC superfamily, atp_bind) tauD2 2176226 - 2177191 + | taurine dioxygenase, 2-oxoglutarate-dependent RALTA_B2001 2177223 - 2178596 + | putative monooxygenase yxeK RALTA_B2002 2178827 - 2180101 + | O-ACETYLHOMOSERINE (THIOL)-LYASE (METHIONINE/HOMOCYSTEINE SYNTHASE) PROTEIN RALTA_B2003 2181159 - 2180188 - | conserved hypothetical protein, putative membrane protein RALTA_B2004 2182397 - 2181156 - | putative Cardiolipin synthetase, Phospholipase D/nuclease superfamily TERM 1517 2182496 - 2182446 - R 84 -15.5 -3.30903 | gap 3, opp_overlap 2182476, overlap 2182435 AAAACCCCGCCACAA CGCCGCTAGCGCCGGCG-G-TGGC TGCGCC GCCAGCGCGCCAGCGCG-GCGGCG GCCAGCGCACCGGCC RALTA_B2005 2182819 - 2182451 - | hypothetical protein TERM 1518 2182711 - 2182692 - G 71 -2.1 -4.58395 | gap 1, overlap 2182693 GGCAGCTTGCAAAAA CGC-GCTG GCGGA CAACTGCG CAGAATGGCTTGCGT TERM 1519 2182965 - 2182927 - H 76 -13 -3.48276 | TGCCTTTCCATACAA TGGGTCGATGCCACGGCG CGA CGCCGAGGCAGCCAACCA ACATCAAAGGGGAGC RALTA_B2006 2182986 - 2183807 + | putative NLPA lipoprotein TERM 1520 2183823 - 2183853 + F 91 -19.1 -3.05384 | gap 1 GCGCCGCGGCAGGCC GGC-AAGGCGCGCC CCGT GGCGCGCCTTCGCC TTGACTCCGGGGCCG TERM 1521 2183859 - 2183889 + F 83 -11.9 -3.97401 | gap 1, overlap 2183885 CGCCTTCGCCTTGAC TCCGGGGCCGGC ATCGCACC GCC-GCCCCGGA TTGTTCTGGTTTTCT TERM 1522 2184086 - 2184049 - g 78 -13.3 -3.61398 | opp_overlap 2184056 CGGCGGCGCCAAGAA CCTGGGCGGGCTGATCG CGCG CGACCTGGCCGCGCAGG GCGCCCGCGCCATCG RALTA_B2007 2183993 - 2184766 + | putative short chain dehydrogenase RALTA_B2008 2184833 - 2185741 + | putative transcriptional regulator, LysR family TERM 1523 2185812 - 2185787 - f 76 -11.1 -3.71284 | overlap 2185788 TGCGCAGCAAGACAA TTTCGCGCGGC GCCG GCCGCGCAAAT GCCCTACACTCAAGC TERM 1524 2185811 - 2185788 - f 75 -14.6 -2.82449 | overlap 2185787 GCGCAGCAAGACAAT TTCGCGCGGC GCCG GCCGCGCAAA TGCCCTACACTCAAG TERM 1525 2185883 - 2185850 - f 72 -4.5 -4.56597 | gap 1, overlap 2185851 2185868 CCCCGCGCCCAAAAA GCACGGCAGGGATCAC AAC GCGATCA-TGCCGCGG AGGGCTGCGAAGATC RALTA_B2009 2185952 - 2187037 + | putative PYRUVATE DEHYDROGENASE E1 COMPONENT (ALPHA SUBUNIT) OXIDOREDUCTASE PROTEIN TERM 1526 2187885 - 2187938 + G 73 -12.3 -3.4252 | gap 1 ATCGTGCACGAGGCG CCGCGCA-CCGCCGGCTTCGGCGC CGAGATC GCGGCGCAGCTGGCCGATGCGGGG TTGTACTCGCTGGCC RALTA_B2010 2187096 - 2188073 + | putative PYRUVATE DECARBOXYLASE E1 (BETA SUBUNIT) OXIDOREDUCTASE PROTEIN RALTA_B2011 2188119 - 2189237 + | putative DIHYDROLIPOAMIDE ACETYLTRANSFERASE (COMPONENT E2 OF PYRUVATE DEHYDROGENASE COMPLEX) PROTEIN RALTA_B2012 2189398 - 2189592 + | putative transcriptional regulator; CopG family RALTA_B2013 2191279 - 2189594 - | putative sulphate transporter, SulP family TERM 1527 2190265 - 2190221 - G 77 -15 -3.21747 | gap 2, overlap 2190223 2190226 GTAGGCCACCACGAA CAGGATCGCGGCCAGCGCGGCC AGC GGC-ACGCTGGCCGCGAGCG-G CGCCAGGAACAGCAG TERM 1528 2190264 - 2190223 - G 86 -18.7 -3.17229 | gap 1, overlap 2190221 2190226 AGGCCACCACGAACA GGATCGCGGCCAGCGCGGCC AGC GGC-ACGCTGGCCGCGAGCG GCGCCAGGAACAGCA TERM 1529 2190261 - 2190226 - G 95 -23.4 -2.78495 | gap 1, overlap 2190223 2190221 CCACCACGAACAGGA TCGCGGCCAGCGCGGCC AGC GGC-ACGCTGGCCGCGA GCGGCGCCAGGAACA RALTA_B2014 2191581 - 2191402 - | hypothetical protein; putative exported protein TERM 1530 2191452 - 2191468 + gH 71 -13.7 -2.50821 | overlap 2191451 2191429 2191426 2191445 CCGCCAGTGCGCGGA CGCGCCA GGC TGGCGCG GTATCTCTTTGCAAG RALTA_B2015 2191496 - 2191933 + | putative universal stress protein, UspA RALTA_B2016 2192029 - 2192685 + | putative Peroxidase; ANTIOXIDANT OXIDOREDUCTASE TERM 1531 2192871 - 2192851 - T 93 -8.3 -5.24129 | CTTGTCCACAAAAAA TATCCACAG GAA CAGTGGATA TCCCCCCTCTTGACA TERM 1532 2192894 - 2192929 + T 83 -9.5 -4.36914 | opp_overlap 2192889 2192888, overlap 2192895 TCTTGACAACCGCGA AGGGCGCGCCCGCGC TGGAAC GCGCTGGAGTGCCCG TTTTATAGGCAACCG TERM 1533 2192895 - 2192928 + T 73 -13 -3.21934 | opp_overlap 2192889 2192888, overlap 2192894 CTTGACAACCGCGAA GGGCGCGCCCGCGC TGGAAC GCGCTGGAGTGCCC GTTTTATAGGCAACC RALTA_B2017 2193982 - 2193014 - | putative Response regulator receiver, CheW-like domain TERM 1534 2194071 - 2194127 + H 71 -8.7 -3.84961 | gap 2, opp_overlap 2194103, overlap 2194072 ACGGCAGGCGTCATG ACCGGATAT-CGGCGCGCGC-CCGC GGGAATTGA GCGGCGCGCGCACCGCATGTGCGGA TTTCATCGTTCCATA RALTA_B2018 2194243 - 2195082 + | putative transcriptional regulator, GntR family RALTA_B2019 2195079 - 2196881 + | Fumarate reductase flavoprotein subunit/ Succinate dehydrogenase RALTA_B2020 2196895 - 2197140 + | putative 4Fe-4S ferredoxin TERM 1535 2197368 - 2197346 - g 73 -9.9 -3.86194 | overlap 2197333 AAGCTGCTCGACAAA TACCTGCCG CGCAC CGGCAAGTA CAAGGACGTCAGCTA TERM 1536 2198328 - 2198295 - g 82 -18.1 -3.05816 | overlap 2198280 CCATCGCCGAGCCAA GGCTGGCCGCGCAGC TGTG GCTGCGGGGCGAGCC CAGGGTGCGCGCCTA RALTA_B2021 2197181 - 2198602 + | putative nitrate/sulfonate/bicarbonate transporter, ABC transporter, periplasmic component RALTA_B2022 2198619 - 2199464 + | putative aliphatic sulphonate ABC transporter, permease protein RALTA_B2023 2199461 - 2200267 + | putative aliphatic sulphonate ABC transporter, ATP-binding component RALTA_B2024 2200294 - 2201292 + | conserved hypothetical protein, PBS lyase HEAT-like repeat RALTA_B2025 2201612 - 2201373 - | hypothetical protein RALTA_B2027 2201891 - 2201631 - | putative carrier, ThiamineS motif RALTA_B2028 2203078 - 2201921 - | putative Glycosyl hydrolase, BNR repeat RALTA_B2029 2203526 - 2203215 - | hypothetical protein RALTA_B2030 2203659 - 2204273 + | hypothetical protein RALTA_B2031 2204498 - 2204289 - | hypothetical protein TERM 1537 2204699 - 2204683 - H 70 -7.9 -4.08767 | GGCAGCCGCCGAAAA CGCCACC TGG AGCGGCG TCGCTGCCTAGAGAT TERM 1538 2206083 - 2206116 + G 73 -15.9 -2.64616 | TTCTCGCCGCTGGCC GCGCTGGTGCCGTCG TACG CCACGGCGCCCGCGC TGATGTACGTGGGCC RALTA_B2032 2204967 - 2206370 + | putative permease, Xanthine/uracil/vitamin C permeases family TERM 1539 2206454 - 2206482 + T 100 -4.5 -5.76949 | overlap 2206456 ATCCTGGTGGATTTC AAGCCCGGG CTTCCTGCTTT CCCGGGCTG TTTTTTTTGGCGCTG TERM 1540 2206456 - 2206480 + T 76 -7.1 -4.52949 | overlap 2206454 CCTGGTGGATTTCAA GCCCGGG CTTCCTGCTTT CCCGGGC TGTTTTTTTTGGCGC RALTA_B2033 2206927 - 2206517 - | hypothetical protein TERM 1541 2207193 - 2207203 + H 77 -2.6 -5.06451 | TGCAATCTCCGTTAT TTTT TGT AAAA TTTTTTCAGGTGCTC RALTA_B2034 2207274 - 2207582 + | putative H-NS histone-like protein TERM 1542 2207639 - 2207667 + T 74 -12.4 -3.53444 | gap 1, opp_overlap 2207587 CCGCTGCCCCGCCAA CCCGTCCGCAGCC CGGG GGCC-CGGACGGG TTTCACAACGCCTGG RALTA_B2035 2208254 - 2207670 - | hypothetical protein TERM 1543 2208506 - 2208465 - H 72 -7.3 -4.1196 | gap 1, opp_overlap 2208456 2208478, overlap 2208466 AACCCATGTTGAAAA CTTCGACGTGATATCCACAG AAT CTGTGGATATCCTGCCGT-G CCCCGTCCGAAAAGC TERM 1544 2208547 - 2208520 - H 73 -8.4 -4.07568 | gap 1 TGCCCCGTCCGAAAA GCCCGGT-CTGTG CGC CACCGCACCGGAC TGCCCAAATTTTAAG RALTA_B2036 2208808 - 2209803 + | putative transcriptional regulator, AraC RALTA_B2037 2210737 - 2209817 - | putative transcriptional regulator, LysR family RALTA_B2038 2210844 - 2212073 + | putative transporter, MFS family RALTA_B2039 2213301 - 2212108 - | putative NnrS transmembrane protein nark2 2213560 - 2214846 + | nitrite/nitrate transporter narK1 2214909 - 2216294 + | nitrite extrusion protein (MFS family) TERM 1545 2216451 - 2216430 - f 71 -11.5 -3.53091 | AGGTGTCCCTGCAAA CGCTCCCGC ATGC GCCGGAGCG CCGCAGCAAAGCCTC TERM 1546 2218705 - 2218692 - g 78 -9.5 -4.18018 | opp_overlap 2218680 GCTCGGCACGCAAAA CGCCG TATT CGGCG ACGAGAACGACGCCA TERM 1547 2220054 - 2220030 - g 70 -12.2 -3.35679 | CGGCGGCATCCATAA CTCGGTCACG CGCGC CGTGACCAAG CCCACCCACATGATC narG 2216482 - 2220228 + | nitrate reductase 1, alpha subunit narH 2220230 - 2221780 + | nitrate reductase 1, Fe-S (beta) subunit TERM 1548 2222120 - 2222089 - g 72 -14.4 -3.1552 | gap 1, overlap 2222087 CCTGATCGACGAATA CCGGCGCGA-CGGCT TCG AGCCGGCCGCGTCGG AGTTGCCGGACTACG narJ 2221808 - 2222473 + | Respiratory nitrate reductase subunit TERM 1549 2223176 - 2223197 + G 73 -10.1 -3.85698 | gap 1, opp_overlap 2223169, overlap 2223181 CCAGCACATCGTCAC GCTGCGCGGC GAC GCCGC-CGGC TTTATCGCCGACGCG narI 2222670 - 2223353 + | nitrate reductase 1, cytochrome b(NR), gamma subunit ppiC 2223381 - 2224133 + | Peptidyl-prolyl cis-trans isomerase TERM 1550 2224651 - 2224603 - g 71 -10.2 -3.73775 | overlap 2224604 GCCAGGTGGAGGAAA CCCTGGCCGCAGCCAGCGCC-GCG CAG CGCCAGCGC-GCCTGCGAGCAGGC GGCGATCCTGGTGTC can2 2224149 - 2224856 + | carbonic anhydrase mobB2 2224861 - 2225421 + | MOLYBDOPTERIN-GUANINE DINUCLEOTIDE BIOSYNTHESIS PROTEIN B nirS 2225502 - 2227178 + | Nitrite reductase precursor (Cytochrome cd1) TERM 1551 2227308 - 2227265 - g 78 -12.2 -3.67878 | overlap 2227266 AGCATGCGAACACAA CGCGCGCTGGCGGCGCTGGT CGTC ACGGGCTGCGCCAGCGCGCT CGCCGCGGCCGATGC TERM 1552 2227307 - 2227266 - g 70 -15.7 -2.80245 | overlap 2227265 GCATGCGAACACAAC GCGCGCTGGCGGCGCTGGT CGTC ACGGGCTGCGCCAGCGCGC TCGCCGCGGCCGATG nirC 2227238 - 2227600 + | C-type cytochrome c55X precursor nirF 2227642 - 2228775 + | nitrite reductase heme d1 biosynthesis protein TERM 1553 2229750 - 2229732 - g 70 -12.4 -3.31461 | CACGCACTGCTACAA GCAGCGCG GCA CGCGCTAC GCCATCCAGGTGCCG nirD 2228785 - 2229771 + | biosynthesis of heme D1 of nitrite reductase nirG 2229768 - 2230256 + | possibly required for the biosynthesis of heme d1 of nitrite reductase (nirD homologue) TERM 1554 2230752 - 2230728 - g 70 -12.7 -3.38812 | overlap 2230726 GCGTGCTGAAGAAGA CCGGGCTGCGG CTG CCGCCGTCCGG CGCGCCCGCCAGCCA nirH 2230256 - 2230798 + | Nitrite reductase heme d1 biosynthesis protein TERM 1555 2230878 - 2230838 - g 74 -14.6 -3.05384 | opp_overlap 2230865 TCCCGCTTCATGGAA GCCCTGCGCGATGACGGC CCGGT GCCGCCACCGCGCCAGCC CGCTGGCCCGGTGGT TERM 1556 2230865 - 2230892 + G 77 -17 -2.62616 | opp_overlap 2230838 GACGGCCCGGTGCCG CCACCGCGCCAG CCCG CTGGCCCGGTGG TGATCTGGAACCTGA nirJ 2230811 - 2231974 + | nitrite reductase heme d1 biosynthesis protein TERM 1557 2233479 - 2233440 - g 74 -12.9 -3.62522 | gap 2, overlap 2233429 2233442 CAACGTCTTCAACAA GACCACGCGCTCGGCCGGC ACCA GCCA-CTGAGCGCGTGG-C GCGATCCCATTGCAG TERM 1558 2233478 - 2233442 - g 82 -16.6 -3.38991 | gap 1, overlap 2233440 ACGTCTTCAACAAGA CCACGCGCTCGGCCGGC ACCA GCCA-CTGAGCGCGTGG CGCGATCCCATTGCA nirN 2231971 - 2233470 + | C-type cytochrome nirE 2233489 - 2234262 + | Uroporphyrin-III C-methyltransferase (Urogen III methylase) (SUMT) (Uroporphyrinogen III methylase) (UROM) RALTA_B2058 2235095 - 2234331 - | conserved hypothetical protein; putative exported protein TERM 1559 2234663 - 2234681 + g 72 -13.8 -3.2218 | CCAGGCCGATCAGCA GGCGGCGG CGG CCGCTGCC TTCATCGATCTTGCG TERM 1560 2235317 - 2235267 - R 70 -9.8 -3.66732 | gap 3, overlap 2235268 GAAGTATGGGAACAA GCCGCGCGCAGCGCCAT-GCGGGAA TTAT TTCGCGCCATGTCAC-G-GCGCGGC GGGGTGCGGCGAGGT RALTA_B2059 2236670 - 2235339 - | sensory histidine kinase in two-component regulatory system TERM 1561 2235704 - 2235686 - G 72 -13.8 -3.12351 | CCGGGCGATAGGGAA CCGGCGGC AAT GCCGCCAG CGACAGCTCGAATTC RALTA_B2060 2237398 - 2236685 - | response regulator in two-component regulatory system, OmpR family RALTA_B2061 2237745 - 2237443 - | hypothetical protein RALTA_B2062 2238800 - 2237820 - | conserved hypothetical protein; putative exported protein TERM 1562 2237892 - 2237846 - G 71 -10.6 -3.75153 | GGGCGGGAACCCAAA CGCCGCCGGCCCAGTGGCCAGG GAT CATGACCGCCGGACGGGCCACG TAGAGCGCGCGCGGC RALTA_B2063 2239050 - 2239964 + | hypothetical protein RALTA_B2064 2240113 - 2240292 + | hypothetical protein RALTA_B2065 2242228 - 2240309 - | Methyl-accepting chemotaxis protein I TERM 1563 2240719 - 2240693 - G 74 -12.3 -3.62096 | opp_overlap 2240694 2240716, overlap 2240694 GGCCACCACCGCAAA GC-CGCGGCCGGC CTC GCCGGC-GCGCGC TGCTTCCACCGCTGC RALTA_B2066 2243713 - 2242451 - | Putative cardiolipin synthetase TERM 1564 2243844 - 2243879 + r 71 -13.3 -3.09516 | gap 2, overlap 2243846 GCGCGCTTGTGGCAT C-C-GGCCCGTGCCGCG CTCG CGCGGCACGCGCCTGCG TTGGATCATGCCGGC TERM 1565 2243846 - 2243875 + r 91 -20.7 -2.55544 | overlap 2243844 GCGCTTGTGGCATCC GGCCCGTGCCGCG CTCG CGCGGCACGCGCC TGCGTTGGATCATGC RALTA_B2067 2244842 - 2243823 - | Regulatory protein, LysR:LysR, substrate-binding TERM 1566 2244454 - 2244441 - G 72 -3.7 -4.57569 | GTATTGCCGCAAAAA GCTCG CCAG CGGGC CCACCAGCACCTCCT TERM 1567 2244980 - 2245013 + G 70 -14.5 -2.78495 | gap 1, overlap 2244978 2244977 2244996 GCAACCTCGCCCGCC GCCACGCTGGC-CGAC CCG GCCGTGCCAGCGCGGC TGGTCTTGCTGCTCG TERM 1568 2245500 - 2245540 + G 82 -14.7 -3.53012 | gap 1, overlap 2245501 TGGCGGCGGCCAGCA TCGCGGCGG-TGGCGCTG GTGGCG CGGCGCCAGCTGCCGCGC TTTACCCCGGCCACG TERM 1569 2245501 - 2245539 + G 78 -18.2 -2.71712 | gap 1, overlap 2245500 GGCGGCGGCCAGCAT CGCGGCGG-TGGCGCTG GTGGCG CGGCGCCAGCTGCCGCG CTTTACCCCGGCCAC RALTA_B2068 2244896 - 2246170 + | putative transporter, MFS_1 family RALTA_B2069 2248067 - 2246184 - | Putative sensor histidine kinase TERM 1570 2246800 - 2246818 + g 74 -11.7 -3.72576 | TCGCGCAGGATGCGT CCGCGCT CGCGC AGCGCGG TTTCCTCCGCGGCGA TERM 1571 2246887 - 2246854 - G 70 -14.5 -2.71712 | gap 1, opp_overlap 2246867, overlap 2246853 TGCGTGCGCGCAAAG GCCGCGCGCAGCTGCG CCT CGC-GCTGCGCGACGC GCTCGGTTAGCACCT TERM 1572 2247827 - 2247801 - G 72 -13.6 -3.16564 | overlap 2247803 GGCCCACGGCACGAA CAGCCCGCCGGG CTC CCCCGCGGGCCA GTTGCGGTCGAAGCG TERM 1573 2247825 - 2247803 - G 80 -16.2 -3.14602 | overlap 2247801 CCCACGGCACGAACA GCCCGCCGGG CTC CCCCGCGGGC CAGTTGCGGTCGAAG RALTA_B2070 2248755 - 2248075 - | putative TWO COMPONENT RESPONSE REGULATOR TRANSCRIPTION REGULATOR PROTEIN TERM 1574 2248924 - 2248889 - H 85 -14.7 -3.59979 | gap 1, opp_overlap 2248877 CCCGTTCAGGGTAAA CGCCGC-CGCCCGTAC CGATC GCACGGCCGCGCGGCG TTGCCCATCCCATAT TERM 1575 2249143 - 2249192 + H 79 -15.6 -2.90212 | gap 1, overlap 2249143 2249171 CCATCCCGGCAACGG CCGCGCTG-CGGTTCGCTGGCGG GATGG CCGCATGCGGGCTGGCGGCGCGG TCTATGACCTGCTGC RALTA_B2071 2249174 - 2249365 + | hypothetical protein TERM 1576 2249516 - 2249494 - g 74 -12.6 -3.53811 | CCGACCTGCGCGAAA CCGCCGCGCC GCT GGCCCGGCAG CAGTAAGGGGCGCCC RALTA_B2072 2249355 - 2249522 + | hypothetical protein TERM 1577 2249561 - 2249580 + G 74 -16.4 -2.73364 | CGCGGCCGGGACATG GCGCCGCG CCGG CGCGGCGC TGCTTGCGCTGACAC TERM 1578 2249619 - 2249669 + G 70 -9.4 -3.85698 | opp_overlap 2249645 2249646, overlap 2249602 CCGCTGCCTGGCGCG GCGGCCTGGTTCGACGGCGACGAG AAG CGCCTCGCGGCCGAGGCGGACCGC TTTGTCGCCGACAAG RALTA_B2073 2249532 - 2250047 + | conserved hypothetical protein; putative exported protein RALTA_B2074 2250235 - 2250792 + | hypothetical protein RALTA_B2075 2251091 - 2252161 + | putative RNA-binding domain; G/S rich motif TERM 1579 2252170 - 2252191 + F 100 -17.3 -5.47821 | opp_overlap 2252162 2252163 CGCATAAGGCCAGTA GCCGGCGGA GCGT TCCGCCGGC TTTTTTTGCATCCCT RALTA_B2077 2252222 - 2253034 + | Exodeoxyribonuclease III, AP endonuclease, family 1 RALTA_B2078 2253948 - 2253031 - | putative transcriptional regulator, LysR family TERM 1580 2253090 - 2253079 - G 84 -7.2 -4.72486 | overlap 2253070 2253080 2253081 GATAAAGCCCAAAAA GGCG CGCA CGCC CTCCGGCAGCGTGCG TERM 1581 2253760 - 2253736 - G 71 -11.3 -3.59979 | overlap 2253737 2253748 GCCGCGCAGCGCAAA GGCCGCCAGCA ACT CGCCGGCGGCG CTGGCCACCATGCCA TERM 1582 2253759 - 2253737 - G 70 -14.8 -2.75844 | overlap 2253736 2253748 CCGCGCAGCGCAAAG GCCGCCAGCA ACT CGCCGGCGGC GCTGGCCACCATGCC TERM 1583 2254302 - 2254286 - g 72 -13.7 -3.21747 | GGACTCGACGACGAA CTGGCGC GCG GCGCCAG CCGCGGCCCGCTGCA RALTA_B2079 2254067 - 2255533 + | Amidase TERM 1584 2255805 - 2255782 - g 72 -3.8 -4.56597 | GGGCTGGGCGAAAAA CTCGGCCA ATCGGTGG TGGTCGAG AACAAGCCCGGCGCC RALTA_B2080 2255605 - 2256582 + | conserved hypothetical protein, UPF0065 RALTA_B2081 2256772 - 2257158 + | putative dehydrogenase RALTA_B2082 2257614 - 2257189 - | putative Endoribonuclease L-PSP soxR 2257850 - 2258308 + | transcriptional activator for superoxide response; Fe-S center for redox-sensing (MerR family) cycA 2258709 - 2258335 - | Cytochrome c2 precursor RALTA_B2085 2258883 - 2259302 + | conserved hypothetical protein, putative signal peptide protein RALTA_B2086 2259455 - 2260111 + | putative oxidoreductase, DSBA-like thioredoxin domain TERM 1585 2260133 - 2260171 + T 100 -26.9 -3.5393 | gap 1, opp_overlap 2260137 GCCTTGCCCGCCAAT GCA-AGTGGCCCGCCCGG TAAC CCGGGCGGGCCACTCTGC TTTCGGCGCACTAAT TERM 1586 2260166 - 2260137 - T 100 -26.5 -3.17075 | opp_overlap 2260133 TGCCCGCCAATGCAA GTGGCCCGCCCGG TAAC CCGGGCGGGCCAC TCTGCTTTCGGCGCA norB 2262478 - 2260190 - | Nitric oxide reductase qNor type norA 2263241 - 2262513 - | NO-responding regulator TERM 1587 2264882 - 2264832 - g 74 -11.4 -3.72695 | gap 4 ACGCCGTGGAGCAAA CCCAGC-G-CGCC-TGCATCGCGCAA GCA TTGCGCGAC-CACGGCGGCAACTGGG CGCAGGCGGCGCGCC norR 2263394 - 2264956 + | transcriptional regulator of anaerobic NO reduction and detoxification (EBP family; Sigma-54 interaction domain RALTA_B2090 2265097 - 2265528 + | hypothetical protein TERM 1588 2265547 - 2265577 + F 100 -16.9 -3.67597 | opp_overlap 2265574, overlap 2265538 GATCCTGCCTCACCG CGGCTGCTTGCCG GGCGG CGGCAATCAGCCG TTGTTGCATCGGCAC RALTA_B2091 2265721 - 2267307 + | putative diguanylate cyclase (GGDEF domain) RALTA_B2092 2267779 - 2267315 - | hypothetical protein RALTA_B2093 2268741 - 2267776 - | putative protease TERM 1589 2268191 - 2268238 + g 79 -18.5 -2.64155 | opp_overlap 2268181, overlap 2268188 2268187 ACAAAGGCTTCCAGC TGCGTGCCG-GCTGGCCGCGCCG CCGC CAGCGCGGCCAGCGTGGCGC-CA TCCATTTCCACCGGC RALTA_B2094 2269759 - 2268773 - | putative protease TERM 1590 2270458 - 2270428 - g 71 -11 -3.55622 | overlap 2270429 GCCAAGCCTGCGAAA GCGGCGCCGATGCC ATC GTCATGGGCGCCGG CCTGCCGCTGGACCT TERM 1591 2270457 - 2270429 - g 70 -14.5 -2.73159 | overlap 2270428 CCAAGCCTGCGAAAG CGGCGCCGATGCC ATC GTCATGGGCGCCG GCCTGCCGCTGGACC TERM 1592 2270610 - 2270570 - g 78 -13.1 -3.71848 | CCGCTGGATGAAGAA GGGCCGGCTGCCCGACGCC ATC GTGGTCGAGCACCCGGCGC ACGCAGGCGGCCACC TERM 1593 2271102 - 2271134 + G 78 -13.3 -3.61398 | GACCTGAAGCTGGCG CAGGCCGTGCGCGGC GAC GTGGAGCGCGGCCTG TTCTTCCGCGGCCGC RALTA_B2095 2270088 - 2271245 + | conserved hypothetical protein, Putative 2-nitropropane dioxygenase TERM 1594 2271242 - 2271221 - T 76 -7.1 -4.4009 | overlap 2271222 GCTGACGGGAGAAAA GCCGGCGGC GCTG GCGGCCGCC TGACCGCAGCATCCC TERM 1595 2271314 - 2271281 - T 100 -23.9 -4.56775 | ACGCCGCCGGAAAAA GGCTCCCCTCGCCCG CTTG CGGGAGAGGGGAGCC AACCGGTAGCATGGC RALTA_B2096 2272629 - 2271337 - | hypothetical protein TERM 1596 2271982 - 2271932 - G 78 -16.7 -3.07895 | gap 1 GCGACGCTGAACACA GCCAGCGGCGCCCAGTGCCCCGGC GGCA GCCAGCGCGCCA-GCGCCGCGGGC AGGCGTGACGTCTGC TERM 1597 2272350 - 2272309 - G 77 -15.7 -3.14132 | gap 1 CTCCCCGCCCAGCAA GCCGAAGCCGAGCGCGGCCG CGA CCGCCGCGC-CGGTCGCGGC CATGAGCCGTGCCAG TERM 1598 2272562 - 2272531 - G 72 -13.6 -3.14132 | TCCGGCTGCCAGCAA CAGCCCCGCGGCCG CGCC CAGCCACGGCGCCG GCATCAGGCACCCGA TERM 1599 2273348 - 2273331 - g 72 -3.3 -4.56597 | gap 1, opp_overlap 2273337 2273338, overlap 2273332 2273333 GGCGCTGCTGAAAAA GGGCGACG CGG CG-CGGCC GCTGTTCCTGCCGGA narX 2273068 - 2275047 + | NarX, PUTATIVE TRANSMEMBRANE NITRATE/NITRITE SENSOR KINASE TRANSCRIPTION REGULATOR PROTEIN TERM 1600 2275352 - 2275314 - g 80 -15.9 -3.15861 | gap 1 GAGGAGGCCGAGGAA CTGGCCGCCGCGCTGCGC GGCG GCGC-GCGCGGCTACCTG ATCAAGAACATCGAG narL 2275044 - 2275697 + | response regulator in two-component regulatory system with NarX, regulates anaerobic respiration and fermentation (LuxR/UhpA familiy) TERM 1601 2275744 - 2275801 + F 87 -19.2 -2.57132 | gap 3, overlap 2275745 GGTCCCTGCAACCCT CGCGCTTTTGCACCGCACCGC-GC-CGGC CTC GCCGCGCAGCCGTGCGGTGCGGC-GCGCG CTTGTGCGGCGCGCC TERM 1602 2275745 - 2275802 + F 84 -15.6 -3.28712 | gap 3, overlap 2275744 GTCCCTGCAACCCTC GCGC-TTTTGCACCGCACCGC-GC-CGGC CTC GCCGCGCAGCCGTGCGGTGCGGCGCGCGC TTGTGCGGCGCGCCA RALTA_B2099 2276004 - 2276162 + | conserved hypothetical protein; putative exported protein TERM 1603 2276255 - 2276286 + F 91 -9.2 -4.60924 | opp_overlap 2276255 2276256, overlap 2276257 2276258 GGCACCTATAACGAA GCGCGGGCACGCGC GGCA GCGTGCGCCCGGTC TTTTTCCACCCTTTC TERM 1604 2276257 - 2276284 + F 76 -10.4 -3.91164 | opp_overlap 2276255 2276256, overlap 2276255 2276258 CACCTATAACGAAGC GCGGGCACGCGC GGCA GCGTGCGCCCGG TCTTTTTCCACCCTT TERM 1605 2276258 - 2276283 + F 74 -13.9 -2.93975 | opp_overlap 2276255 2276256, overlap 2276257 2276255 ACCTATAACGAAGCG CGGGCACGCGC GGCA GCGTGCGCCCG GTCTTTTTCCACCCT RALTA_B2100 2276324 - 2276512 + | hypothetical protein TERM 1606 2276570 - 2276601 + T 91 -18.8 -2.87132 | opp_overlap 2276566 2276576, overlap 2276574 AGCGCGGAATACCCG CCAACAGGGCAGGC GCGC GCCTGCCCTGTTGC TATCTGGCCCCCGCG TERM 1607 2276574 - 2276597 + T 93 -18.2 -3.32022 | opp_overlap 2276566 2276576, overlap 2276570 CGGAATACCCGCCAA CAGGGCAGGC GCGC GCCTGCCCTG TTGCTATCTGGCCCC TERM 1608 2276595 - 2276576 - T 78 -15 -3.04248 | opp_overlap 2276574 2276570, overlap 2276566 GAATACCCGCCAACA GGGCAGGC GCGC GCCTGCCC TGTTGCTATCTGGCC RALTA_B2101 2277371 - 2276601 - | conserved hypothetical protein, COG4318 TERM 1609 2277154 - 2277193 + g 73 -15.8 -2.57335 | gap 1, opp_overlap 2277150, overlap 2277150 2277146 2277146 CGGCGCATGAAGCGC TGCAGCGCTGCGCC-ATCT TCC GGATTGGCGTGGCGCTGCG TGACTTCCATCTTGT RALTA_B2102 2277807 - 2277355 - | hypothetical protein RALTA_B2103 2278832 - 2277975 - | putative oxidoreductase, NAD(P)-binding domain TERM 1610 2279425 - 2279410 - gH 78 -11.8 -3.71848 | overlap 2279393 2279420 CGCCGCGATGAACAA CGCGGC GAAA GCCGCG GCCAGGGCAGCAGCA TERM 1611 2279608 - 2279579 - gH 74 -14.3 -2.62983 | gap 1 GCCATCCGTACAGCA GCGGCTATGG-CGG CTA CCGGCCATCGCCGC AGGACAGCGGCTACC RALTA_B2104 2278819 - 2280363 + | putative RNA-binding domain; G/S rich motif RALTA_B2105 2280367 - 2281041 + | hypothetical protein RALTA_B2106 2282145 - 2281060 - | putative Eukaryotic-like DNA topoisomerase I TERM 1612 2281773 - 2281816 + g 70 -12.3 -3.31144 | gap 1, overlap 2281776 GCGCCACCCGGGCGC GCAGGCGCGGCAGCGCGGCG CCGAA TGCCGC-CAGCCGCGCATAC TTGTCGGAATCGCGC RALTA_B2107 2283012 - 2282158 - | hypothetical protein TERM 1613 2282947 - 2282920 - G 71 -10.6 -3.73647 | gap 1, overlap 2282923 GCCATGCACGAACAA CACGCCCGGCAAC TTG GTTTCCGGGC-TG ATCAGGGTACCGGCA RALTA_B2108 2284117 - 2282999 - | hypothetical protein TERM 1614 2283847 - 2283800 - G 70 -8.2 -3.85698 | gap 1, opp_overlap 2283844 CGCGCGTCGCACAAA GGCCTCGGACCAGCCCCGCGGCG CCG CTGCGCCAGGCTCGACC-AGGCC ATGCGTGATGGCCTT TERM 1615 2284159 - 2284171 + r 70 -10.5 -3.60234 | CTGCGCGATCTGCTG CCGGC AGC GCCGG TTTGCGCCTGTCTGG RALTA_B2109 2284776 - 2284264 - | hypothetical protein TERM 1616 2285134 - 2285157 + H 90 -19.6 -2.64616 | opp_overlap 2285122 GAAGCGGCGACTCCC GGCGCGACGG TGGC CCGTCGCGCC TGCTATCCCTGGGCC TERM 1617 2285499 - 2285442 - g 72 -3.3 -4.57073 | gap 2, overlap 2285480 2285481 CAGCGCGTGGAAAAA GCCGCCGCTGTCAGTCCGGGCGTGCTG GGGGTG CATAACGCGCTGTC-GACA-CGGCAGC CGCCACCGCCCGAAC RALTA_B2110 2285268 - 2285594 + | hypothetical protein TERM 1618 2285652 - 2285616 - T 85 -15.8 -3.53012 | overlap 2285617 GCGCCTGCCCGCAAA TGCCAGCGCGCCGGAG GTTTT CTCCGGCGCACTGGTG CTGACGACTGAGGAT TERM 1619 2285651 - 2285617 - T 87 -19.3 -2.71712 | overlap 2285616 CGCCTGCCCGCAAAT GCCAGCGCGCCGGAG GTTTT CTCCGGCGCACTGGT GCTGACGACTGAGGA RALTA_B2111 2286130 - 2285669 - | Conserved Hypothetical protein with a PRC-barrel domain RALTA_B2112 2286784 - 2286194 - | conserved Hypothetical protein, putative membrane protein TERM 1620 2286570 - 2286538 - G 74 -16.9 -2.71364 | CCAGGGCCGCAACCA GCGCTGCGCCGAGCG CGG CGCCTGCCGCAGCGC CGAGCAGCACCCCGC RALTA_B2113 2287618 - 2286890 - | hypothetical protein TERM 1621 2287113 - 2287135 + g 75 -10.5 -4.08767 | overlap 2287106 GACTTCGCGGCGGTG CTGGTCGCC TTCCT GGCGGCCGG TTTTGCAGGCATGCC RALTA_B2114 2288722 - 2287862 - | putative ATP_binding Histidine kinase A component of the two component sensory system zraR 2290336 - 2288936 - | response regulator in two-component reguatory system (EBP family) RALTA_B2116 2290842 - 2290690 - | hypothetical protein TERM 1622 2291071 - 2291057 - gR 77 -3.4 -4.72272 | overlap 2291059 TTCGGCCATGAAAAA GGCGGC TTT ACCGGC GCGGTCGAGCAGAAG TERM 1623 2291510 - 2291497 - gR 71 -9.5 -3.73068 | opp_overlap 2291496 2291495 GCGCGAACTGAAGAA CGCGG TCTA CCGCG CCTTTATCCTCGCCG RALTA_B2117 2290808 - 2291755 + | Transcriptional regulatory protein, sigma-54 interaction domain, HTH Fis-type RALTA_B2118 2293728 - 2291740 - | Putative sensor hybrid histidine kinase with PAS domain TERM 1624 2293344 - 2293307 - G 72 -4.5 -4.52047 | overlap 2293308 2293309 CAGGACACGATAAAA CCCGCGCCCGGCGCGCC ATCG GGCAGGTCGGCCGCGTC AATGCGCCGCATCTC TERM 1625 2293898 - 2293846 - R 70 -12.6 -2.92192 | gap 1 TTCCAGTCAATGATA GGCGCTCGCGGCCCATGCGCCAC CCGCTATC GCGGCGCAAGGGGCGCATG-GCC CGTTCCGGGGAAACG RALTA_B2119 2294943 - 2293978 - | putative Short-chain dehydrogenase/reductase SDR TERM 1626 2294261 - 2294290 + g 72 -8.5 -4.07568 | gap 1, opp_overlap 2294275 2294277, overlap 2294262 GAGAAGGCCTTGGCG GCGGCGCCGACGAA CAG TTCG-CGGCGCGGG TTTTCCGCGGCGAAC TERM 1627 2295400 - 2295349 - g 85 -16.4 -3.53761 | gap 1, overlap 2295326 GAAGCCCGCGGCAAA GCGGTCGGGCAGCGC-GCGCCCGGC GGC ACGGGGCGCCGCGCCGGCCGAGGGC ACGACGGCGCCCCTG TERM 1628 2295470 - 2295422 - g 72 -3.9 -4.56597 | gap 4, overlap 2295424 GCGCCCCTGGAAAAA TACCGCCGCATGCGCGATTTCGGCG CCA CGCCGGAG-C-C-CA-GCGGCGGCA CCGCCCGCGCCACGC TERM 1629 2295478 - 2295505 + G 78 -14 -3.54743 | CGGCGGCACCGCCCG CGCCACGCCGCG CAAG CGCGCCGCGGCG TTGTCGTTCGTGATC RALTA_B2120 2295275 - 2298025 + | ATP dependent DNA ligase TERM 1630 2298009 - 2298065 + F 76 -8.7 -4.183 | gap 4, opp_overlap 2298052, overlap 2298008 GCGCCGCGGGGCGCC TG-G-CGCGGGCCG-CGTAGCGCCGCGCC GCG GGC-CGGCGCAACCATGGCCGGCGGCACA TTTCTTGCCCCTTGG RALTA_B2121 2298152 - 2298553 + | conserved hypothetical protein; putative exported protein TERM 1631 2298792 - 2298745 - f 73 -10.7 -3.6106 | gap 3, opp_overlap 2298780 2298784 TGCAAGACTTTCAAA GGCAGTGCGAGGCACCGTG-GTAA TCC TTACACACGGTGCC-CGCTG-GCC GGTGCGCTTTTACAA RALTA_B2122 2298780 - 2300936 + | putative Sensor hybrid histidine kinase with PAS domin TERM 1632 2301574 - 2301539 - g 74 -11.2 -3.72576 | CGCTGCTGCACGAAA CCATGCGCC-GCACCG GCAAGG CGGCGCTGGCGC-TGG TGGTGCTGCGCGCGC TERM 1633 2302078 - 2302025 - g 82 -17.3 -3.01712 | gap 1, overlap 2302009 2302004 2302056 CGGCGCGCCGCAAGA CGCCTGCGCGCCATGCGGCGGCGC GCAAGCA GC-CCGCCGCGAAGCGCACCGGCG CCACGTCGGCCAAGC RALTA_B2123 2301154 - 2302212 + | ATP-dependent DNA helicase, Ku domain TERM 1634 2302233 - 2302201 - T 100 -9.7 -5.03715 | opp_overlap 2302223 2302224, overlap 2302203 ACCACGGGCAAAAAA CGCGCGGCTTGAAGG GTG CGGCCAAGCCGCGGG GAAGTGTTTCCCGCG TERM 1635 2302223 - 2302253 + T 70 -7.4 -4.0162 | opp_overlap 2302203 2302201, overlap 2302224 CTTGAAGGGTGCGGC CAAGCCGCGGGGAA GTG TTTCCCGCGGCCAC TTTATCGTGTCGACA RALTA_B2124 2302656 - 2302255 - | conserved hypothetical protein, putative periplasmic protein, BON domain, putative phospholipid-binding domain TERM 1636 2302864 - 2302849 - R 83 -11.8 -4.08216 | overlap 2302850 CCAGGCGTTGTAAAA GCGCCC CGGC GGGCGC GTGGCGCATCGCGCG TERM 1637 2302878 - 2302916 + r 72 -13.9 -2.73364 | gap 2, opp_overlap 2302850 GCGTGGCGCATCGCG CGCATGGCGCCGGCACAGC GCG GC-GTGACGGCGCCGT-CG TGCTTGGCATGGCGA RALTA_B2125 2303232 - 2302972 - | hypothetical protein TERM 1638 2303359 - 2303388 + H 95 -11.3 -4.56597 | overlap 2303360 ACGCCGGAGATTGGC AGGCCGGAACCCT GAAC GGGGCTCCGGCCC TTTTTGCGACCAGAG TERM 1639 2303360 - 2303387 + H 82 -14.8 -3.33744 | overlap 2303359 CGCCGGAGATTGGCA GGCCGGAACCCT GAAC GGGGCTCCGGCC CTTTTTGCGACCAGA RALTA_B2126 2303439 - 2304446 + | hypothetical protein TERM 1640 2304699 - 2304669 - f 100 -7.5 -5.40474 | opp_overlap 2304672, overlap 2304655 2304652 2304672 ACGTGGGCAAAAAAA GAAGCCCACGCGC GGGGT GCTCGTAGGCTTT CCAGGACTGCTCGAG TERM 1641 2304696 - 2304672 - f 93 -9.2 -4.79949 | opp_overlap 2304672, overlap 2304655 2304652 2304669 TGGGCAAAAAAAGAA GCCCACGCGC GGGGT GCTCGTAGGC TTTCCAGGACTGCTC TERM 1642 2305108 - 2305131 + F 75 -13.8 -3.02511 | CCGTTGCGCGACATT CCCTGGCCCG TGCA CGCGCCAGGG TCTTGGCGCAATCCG RALTA_B2127 2305278 - 2305604 + | hypothetical protein fliC 2305839 - 2307071 + | FliC: flagellar biosynthesis; flagellin, filament structural protein TERM 1643 2307095 - 2307116 + F 100 -15.1 -4.56597 | opp_overlap 2307095 GCGCATGGTGCAGAA GGCTGGGCC GCAA GGCCCGGCC TTTTTGCCACGGCAC TERM 1644 2307116 - 2307095 - f 74 -12.9 -3.30124 | opp_overlap 2307095 GCGCATGGTGCAGAA GGCTGGGCC GCAA GGCCCGGCC TTTTTGCCACGGCAC TERM 1645 2307151 - 2307194 + F 95 -19 -3.53444 | overlap 2307152 CCAGCGTCGCCGGAA TGCTTCGCAGGCAGGCAG CCGTCTCA CTGCCTGCCTGCAAAGCG TTTCAAACCCCGTAG TERM 1646 2307152 - 2307193 + F 90 -20.3 -2.71924 | overlap 2307151 CAGCGTCGCCGGAAT GCTTCGCAGGCAGGCAG CCGTCTCA CTGCCTGCCTGCAAAGC GTTTCAAACCCCGTA flaG 2307240 - 2307620 + | FlaG: Flagellar protein TERM 1647 2307686 - 2307670 - f 78 -2.9 -5.09259 | overlap 2307672 CAGTGGAAAAGAAAA GGCACGA CCA TCATGGC AACGATCTCCTCCCT fliD 2307682 - 2309088 + | FliD: Flagellar hook-associated protein 2 , Belongs to the fliD family fliS 2309126 - 2309551 + | FilS: flagellar biosynthesis; Belongs to the fliS family fliT 2309616 - 2309900 + | FliT: Flagellar protein RALTA_B2133 2309937 - 2311259 + | hypothetical protein RALTA_B2134 2311256 - 2311546 + | putative flagellar protein TERM 1648 2311854 - 2311836 - g 75 -10.2 -4.07568 | CGGGCGCCTTGAAAA CCCTCGGC CAG GCCGAGCG CATCGGCGTGCGAAC TERM 1649 2312032 - 2312012 - g 76 -13.9 -3.52652 | overlap 2311970 GCGATCGAAGTACAA CGCGCGCGG TAC CAGCGCGCG GCGGAACTGCTGAAA RALTA_B2135 2311739 - 2313988 + | conserved hypothetical protein, Tetratricopeptide repeats RALTA_B2136 2313985 - 2314755 + | Glucose-1-phosphate cytidylyltransferase (CDP-glucose pyrophosphorylase) RALTA_B2137 2314794 - 2315834 + | CDP-glucose 4,6-dehydratase RALTA_B2138 2315862 - 2317112 + | putative Methyltransferase RALTA_B2139 2317109 - 2317663 + | DTDP-4-dehydrorhamnose 3,5-epimerase TERM 1650 2317755 - 2317734 - g 73 -10.2 -3.86822 | GAAGCCCTTCAGAAA CTGTCTGC GGCGCT GCAGACAG TGGCCGCAAGCCCCG RALTA_B2140 2317710 - 2318780 + | hypothetical protein RALTA_B2141 2318879 - 2319604 + | Putative sugar nucleotide oxidoreductaseepimerase protein (fragment) RALTA_B2142 2319685 - 2320248 + | hypothetical protein TERM 1651 2320279 - 2320309 + T 71 -9.7 -3.73068 | gap 1, overlap 2320281 GCCCGCGCCAGCGAC GACCCCTGT-CCGC AGAC GCGGTGCAGGGGTG TTGTTCAGTTGCCGG TERM 1652 2320281 - 2320307 + T 74 -12.3 -3.44686 | gap 1, overlap 2320279 CCGCGCCAGCGACGA CCCCTGT-CCGC AGAC GCGGTGCAGGGG TGTTGTTCAGTTGCC fliE 2320625 - 2320329 - | FliE: Flagellar Biosynthesis protein; hook-basal body complex protein TERM 1653 2320491 - 2320470 - G 74 -12.3 -3.66178 | gap 1, opp_overlap 2320487 CTTGCCAAGCTCAAA CGCCT-CGGC CTG GCCGTAGGCG CGCTCCTGCGCGGCG TERM 1654 2322744 - 2322717 - g 91 -14.8 -3.84246 | CCGCGAAGTATGAAA GCGACCTCGCGC TGGT GCGCGACGCCGC CCAGCGCGACCCCCG fliF 2321078 - 2322808 + | FliF: Flagellar biosynthesis protein, M-ring protein, Belongs to the fliF family fliG 2322795 - 2323805 + | FliG: Flagellar Biosynthesis protein; motor switch protein TERM 1655 2323900 - 2323875 - gf 70 -11.7 -3.14132 | GTCCCTGGGCAGCAA CGGCGCCGCCG GTGC CGGCGGCTTCG CGCCGTTCGAGCCGC fliH 2323840 - 2324604 + | FliH: Flagellar Biosynthesis protein; flagellar assembly protein fliI 2324567 - 2326075 + | FliI: Flagellar Biosynthesis protein; flagellum-specific ATP synthase fliJ 2326041 - 2326499 + | FliJ: flagellar biosynthesis protein , belongs to the fliJ family. fliK 2326550 - 2327998 + | FliK: Flagellar Biosynthesis protein; hook-length control protein TERM 1656 2328067 - 2328038 - f 88 -14.4 -3.72576 | gap 1, opp_overlap 2328041 2328044, overlap 2328041 TGCGCCCGCATGAAA GAGCAAGGCCGCC TCAAG GGCGGCCTTG-TC ATGTCAGCAGAAGCG TERM 1657 2328041 - 2328065 + F 86 -17.9 -2.62184 | opp_overlap 2328038 2328041, overlap 2328044 GCCCGCATGAAAGAG CAAGGCCGCCT CAA GGGCGGCCTTG TCATGTCAGCAGAAG TERM 1658 2328065 - 2328041 - f 83 -17.2 -2.66695 | opp_overlap 2328041 2328044, overlap 2328038 GCCCGCATGAAAGAG CAAGGCCGCC TCAAG GGCGGCCTTG TCATGTCAGCAGAAG TERM 1659 2328044 - 2328062 + F 79 -13.8 -3.46602 | opp_overlap 2328041 2328038, overlap 2328041 CGCATGAAAGAGCAA GGCCGCCT CAA GGGCGGCC TTGTCATGTCAGCAG RALTA_B2150 2328266 - 2328367 + | hypothetical protein RALTA_B2151 2328411 - 2328827 + | putative transcription regulator, cro/C1-type DNA-binding domain. alkB 2328861 - 2329523 + | Alkylated DNA repair protein TERM 1660 2329540 - 2329565 + F 71 -4.6 -4.40358 | CGCGCTAGCCGCCTG CCCCGGCC TTGGCACTTT GGCGGGGG TTTTCTACAGTCAAT TERM 1661 2329814 - 2329862 + G 73 -9.5 -3.92373 | gap 2, overlap 2329846 2329851 GCGTCTACCGCGCCG TGCTGCGCGAGCCCGGCAAGCGC GCGCG GCGCTCGCCGG-CGCA-GCGGCA TTTCTGCGTGAAGTG RALTA_B2153 2329618 - 2330106 + | hypothetical protein cysK 2331085 - 2330168 - | Cysteine synthase RALTA_B2155 2331270 - 2332034 + | hypothetical protein RALTA_B2156 2332696 - 2332079 - | hypothetical protein TERM 1662 2332313 - 2332283 - G 74 -13.2 -3.25823 | CGGGCCGTACAGGAA CAGCACGCCGCCGG GGC CCAGCAGCTTGCCG GCACCCGCGAACAGC TERM 1663 2332772 - 2332746 - R 100 -20.8 -3.9712 | overlap 2332747 CTAGCGTAGCAGAAA TGGCGCGCGGCC TGC GGCCGCGCGCCG GTCAGCCAATCAGCC TERM 1664 2332771 - 2332747 - R 100 -24.3 -2.97951 | overlap 2332746 TAGCGTAGCAGAAAT GGCGCGCGGCC TGC GGCCGCGCGCC GGTCAGCCAATCAGC RALTA_B2157 2334242 - 2332782 - | conserved hypothetical protein; putative exported protein TERM 1665 2332808 - 2332843 + g 71 -9.6 -3.73224 | gap 1, opp_overlap 2332785 TGCACGGGAACGCCT GCGCCACCGACGGCCGC AGC GCCGCCGT-GGTCGGGC TTTCGTCGCCGCTCA TERM 1666 2333051 - 2333005 - G 71 -10.8 -3.57144 | opp_overlap 2333048, overlap 2333006 TCGGCCACGGTGAAA TCGCAATGGCTCACGCCGCG GATGGCG CGCTGCACCAGCCATTGCGC GGTGCCGTTGGCATC TERM 1667 2333048 - 2333076 + g 73 -12.3 -3.40299 | opp_overlap 2333006 2333005 GCTGCACCAGCCATT GCGCGGTGCCGTT GGC ATCGGCGCGGCGC TTGTAGATCTGCTCC TERM 1668 2334108 - 2334126 + g 72 -4.4 -4.64676 | overlap 2334113 ATCCATGGTGAAGGT GCGGTCGT CCT GCGGGCGC TTTTCTTCGGCCTGC TERM 1669 2334496 - 2334476 - R 100 -19.7 -4.27316 | opp_overlap 2334476 GCCGTGAATGCAAAA CGGCGGGCC GAG GGCCCGCCG TTGTCATCACCGCAC TERM 1670 2334476 - 2334496 + r 100 -19.7 -3.40403 | opp_overlap 2334476 GCCGTGAATGCAAAA CGGCGGGCC GAG GGCCCGCCG TTGTCATCACCGCAC RALTA_B2158 2336454 - 2334523 - | conserved hypothetical protein; putative exported protein RALTA_B2159 2336779 - 2337402 + | hypothetical protein RALTA_B2160 2337404 - 2337703 + | putative ferredoxin RALTA_B2161 2338096 - 2337710 - | putative toxin of a toxin/antitoxin system RALTA_B2162 2338338 - 2338093 - | antitoxin of a toxin/antitoxin system, phd-like TERM 1671 2338282 - 2338265 - G 70 -3.3 -4.46212 | gap 1, overlap 2338266 2338267 TTGGCGATCACAAAA GGCTCGCC GTT GGCC-GCC TGATCGACCAGCCGC phaZ4 2339504 - 2338407 - | Poly(3-hydroxybutyrate) depolymerase TERM 1672 2338585 - 2338633 + g 73 -16.1 -2.53263 | opp_overlap 2338571 ACGTCGATGGCGCGG CGCACGCCGC--GCTGGATGCGCCG CGC CGGCGCG-CCGGCCAGCGGCG-GCG TGCCTTCGGGCTGCA TERM 1673 2339251 - 2339267 + g 71 -10.8 -3.61398 | opp_overlap 2339226 CGGCGCGGCGCCAGC GGCGCG CCCCA CGCGCC TTCTTCCCAGCGCCC RALTA_B2164 2339647 - 2339838 + | hypothetical protein RALTA_B2165 2342339 - 2339889 - | conserved hypothetical protein, COG4222 TERM 1674 2342928 - 2342875 - g 71 -9.5 -3.78953 | gap 2 ATCCGCACCAGCAAA GCCAGGCCCGCCGACCTGAAGCCGA TCGGCT TCGGCTAC-G-CCGCCGCGCCCGGC ACCGTGGTCAACAAC cah 2342725 - 2343435 + | Carbonic anhydrase precursor RALTA_B2167 2344390 - 2343635 - | conserved hypothetical protein, DUF81; putative permease, membrane protein RALTA_B2168 2344757 - 2344401 - | hypothetical protein RALTA_B2169 2345928 - 2344774 - | putative cytochrome P450 family protein TERM 1675 2346085 - 2346116 + H 100 -17.2 -3.57144 | overlap 2346086 TGTATGCTTTGAGCA CGGCGTGCCGCACG CCTT CGCGCGGCACGCCA TTTCAAACTACGGCG TERM 1676 2346086 - 2346115 + H 91 -20.7 -2.74144 | overlap 2346085 GTATGCTTTGAGCAC GGCGTGCCGCACG CCTT CGCGCGGCACGCC ATTTCAAACTACGGC RALTA_B2170 2346140 - 2346559 + | hypothetical protein czcA1 2349771 - 2346577 - | Cation efflux system protein, heavy metal resistance czcB1 2351044 - 2349761 - | Cation efflux system protein, heavy metal resistance TERM 1677 2350728 - 2350708 - G 70 -14.7 -2.71712 | overlap 2350707 TCTCGCCGGGGAAAT CGACGCTGC TGC GCAGCGCCG CCGCGGCGGCAGTGG czcC1 2352325 - 2351060 - | Cation efflux system protein, heavy metal resistance czcI1 2352816 - 2352442 - | Cation efflux system protein, heavy metal resistance RALTA_B2175 2353093 - 2353470 + | conserved hypothetical protein; putative exported protein RALTA_B2176 2353861 - 2353646 - | hypothetical protein RALTA_B2177 2354494 - 2353901 - | Putative RNA polymerase sigma factor; sigma-70 factor family, ECF subfamily. TERM 1678 2354609 - 2354594 - H 81 -11.8 -3.92832 | opp_overlap 2354604 AAACTGCGCAAACAA GCCGGC TTTG GCCGGC CAGCCCGGGGTTCGT RALTA_B2178 2354922 - 2356103 + | Putative ADP-heptose--LPS heptosyltransferase; glycosyltransferase 9 family RALTA_B2179 2357804 - 2356182 - | Putative AAA-family ATPase protein TERM 1679 2357183 - 2357163 - G 72 -13.9 -3.14132 | opp_overlap 2357177 2357178 2357179 2357181 GCGCGTCGCGACGAA CTGCGCGCC GAA GGCGCGCTG GCAGCGCACGAAGCG RALTA_B2180 2358531 - 2357857 - | Putative esterase RALTA_B2181 2359087 - 2358704 - | hypothetical protein RALTA_B2182 2359627 - 2359220 - | putative small heat shock protein (HSP20) family protein TERM 1680 2359551 - 2359562 + g 72 -5.8 -4.30844 | opp_overlap 2359544, overlap 2359507 2359506 GGCAGCAACGTCATG GTCG GCAG CGAC TTTTCCTCCTGGCCT RALTA_B2183 2360083 - 2359643 - | Putative small heat shock protein (HSP20) family protein TERM 1681 2360198 - 2360170 - R 76 -6.7 -4.50993 | gap 1, overlap 2360173 GCAAACAAACAGAAA CACGCAG-CGCG CAACGT CGCGACTGCCTG AGCGAAAAATAAAAT RALTA_B2184 2360579 - 2360397 - | putative transposase fragment RALTA_B2185 2361537 - 2360542 - | conserved hypothetical protein; putative exported protein, UPF0065 TERM 1682 2361485 - 2361536 + gH 82 -5.9 -4.72986 | gap 2, opp_overlap 2361496, overlap 2361486 2361488 2361529 2361532 TAGCCGGCCCACGCT GGCTGAACCGACGCGATCGTTCCTG CCAC CACGAACCATC-CGCCGGTTC-GCA TTTTTGCTGCGAGTC TERM 1683 2361733 - 2361755 + H 91 -3.4 -5.43866 | gap 1 AAGATGCGGACCTCC CGGCTGCGC CTGCAA GC-TAGCCG TTTTTTTGCACATTG RALTA_B2186 2361768 - 2367011 + | putative serine/threonine kinase with signal transduction histidinekinase and gaf sensor TERM 1684 2367206 - 2367242 + G 82 -17.2 -3.01712 | CGGCAGCGCCCGGCC CGCCGGCGAGCTGGCG CTGAT CGCCGGCCTGTCGGCG TCTTCCACCAGCGGG TERM 1685 2367413 - 2367455 + G 73 -16.9 -2.62396 | gap 1, overlap 2367434 GTTGCGCGCGGTGCC GGTGTCGCGCACGGCGCCGC CGGC GCTGCGCCAGGCGCG-CACC TGCTATGACCACCTG RALTA_B2187 2367108 - 2367797 + | Putative transcription regulator, ArsR family TERM 1686 2367833 - 2367822 - f 77 -2.2 -4.98436 | GCAACAGGAGAAAAA GATG GCCA CACC GCTGGACGATGACAC TERM 1687 2367855 - 2367866 + G 73 -7.2 -4.1711 | opp_overlap 2367848 CGATGACACGCAGGA CGCG ATCG CGCG TTTCTTCGCCCTGAT TERM 1688 2367969 - 2368017 + G 75 -9.7 -4.07877 | opp_overlap 2367962 TGACGACACCGACGG GCCGGAACTGCT-GTGGGTGATC CGCGA GGTCATCGACTGGCAG-TCCGGC TTCTTTGTCGACTGG RALTA_B2188 2367823 - 2368329 + | hypothetical protein RALTA_B2189 2369462 - 2368377 - | putative S-(hydroxymethyl)glutathione dehydrogenase; zinc-containing alcohol dehydrogenase family RALTA_B2190 2371225 - 2369549 - | Putative phospholipase D family protein; Cardiolipin synthase subfamily RALTA_B2191 2371350 - 2371177 - | hypothetical protein TERM 1689 2371598 - 2371629 + H 90 -18 -3.10164 | overlap 2371549 2371617 2371618 GCCGCCCGGCGATGC CGGCATCGTTGCGC GCCT GCGCGCCGATGCCG TTCAGTGATGGCTGC TERM 1690 2371617 - 2371667 + H 85 -14.9 -3.55622 | overlap 2371598 2371618 ATCGTTGCGCGCCTG CGCGCCGATGCCGTTCAGT-GATGG CTG CC-TCGACTGAACGGCATTAGCGCC TTTGCGCCCCTTCGC TERM 1691 2371618 - 2371666 + H 86 -18.4 -2.73159 | overlap 2371598 2371617 TCGTTGCGCGCCTGC GCGCCGATGCCGTTCAGT-GATGG CTG CC-TCGACTGAACGGCATTAGCGC CTTTGCGCCCCTTCG TERM 1692 2372494 - 2372470 - g 75 -5 -4.57569 | gap 2, opp_overlap 2372470 2372474 2372477 2372478, overlap 2372473 CGATCCGGCGAAAAA CATCCCGCGCGC CGT GCGC-CAGG-TG TTCTGGCGCATCCTG lysP2 2371739 - 2373271 + | lysine-specific permease; amino acid-polyamine-organocation (APC) superfamily RALTA_B2193 2373340 - 2375016 + | Putative exoenzyme regulatory protein; putative exported protein TERM 1693 2375075 - 2375020 - T 91 -20.5 -2.73542 | opp_overlap 2375074 GGCAAGCGGTAATCA CGCGATAGTGCAC-CAGCGGCCTGCCC GTAC GGGCAGGCCGCGGCGTG-ACGAGCGCG GCACCGCAAGGGGTG TERM 1694 2375074 - 2375093 + T 100 -10.7 -5.06816 | opp_overlap 2375020 GCGGCGTGACGAGCG CGGCACC GCAAGG GGTGCCG TTTTTGTTGGAGCGT RALTA_B2194 2375536 - 2375111 - | Conserved hypothetical protein; putative dioxygenase RALTA_B2195 2376442 - 2375615 - | Putative transcription regulator, AraC family TERM 1695 2375983 - 2375945 - G 80 -18 -2.87564 | GTACGCCGCCAGATA GTCGCCGCTGGAACGCCG CGC CGGCGTGCCGGCGACGGC GGCCAGCGCATGCGC RALTA_B2196 2376716 - 2378116 + | conserved hypothetical protein; putative exported protein RALTA_B2197 2379071 - 2378151 - | Catechol 1,2-dioxygenase 2; intradiol ring-cleavage dioxygenase family RALTA_B2198 2379752 - 2379198 - | hypothetical protein TERM 1696 2380068 - 2380082 + H 76 -8.6 -4.21439 | opp_overlap 2380068, overlap 2380064 CGGTCTTTTCCTAAA TGCGAA TTA TTCGCA TTTGTATTGACATTC TERM 1697 2380381 - 2380342 - g 89 -7 -4.84359 | gap 1, overlap 2380344 GCAGCTTGAGAAAAA GGCCAGCACCG-GCGCG CTCGGTT CGCGCACGCAGCTGGAC ACGCCATACTCCACC TERM 1698 2381981 - 2381995 + G 72 -8.5 -3.96148 | AGCGGCAACCGCGTG GCCGG CGCGC CCGGC TTTATCATGGCCGGA RALTA_B2199 2380133 - 2382295 + | Putative TonB-dependent siderophore receptor precursor TERM 1699 2382322 - 2382339 + T 100 -12.7 -5.5604 | opp_overlap 2382319 2382317 2382322 ATGCGCACAACAGGA CCCGCTC TTCG GAGCGGG TTTTTTGTTGGTTCA ISRta4.3 2383729 - 2382704 - | transposase IS110 family RALTA_B2201 2384521 - 2386044 + | putative allantoin permease; cytosine/purines, uracil, thiamine, allantoin permease family. RALTA_B2202 2386099 - 2386833 + | Putative hydantoin racemase RALTA_B2203 2386985 - 2387974 + | hypothetical protein TERM 1700 2388102 - 2388084 - f 100 -17.4 -4.72333 | AACCACATCGAAAAA GGCGGCGC CCG GCGCCGCC GCCAAAGCCCCGCGC TERM 1701 2388559 - 2388537 - g 71 -10.4 -3.71998 | overlap 2388538 CATGGAGGAAGACAA CGCGCGCGCC CGC GGCGACCGCG CGGCAATGATCCGCC RALTA_B2204 2388148 - 2388870 + | putative transcription regulator, GntR family RALTA_B2205 2388916 - 2389293 + | hypothetical protein RALTA_B2206 2389676 - 2389290 - | hypothetical protein RALTA_B2207 2390754 - 2389747 - | conserved hypothetical protein, UPF0065; putative exported protein RALTA_B2208 2391964 - 2390798 - | Putative formyl-coenzyme A transferase; caiB/baiF CoA-transferase family RALTA_B2209 2392921 - 2391974 - | Hydroxymethylglutaryl-CoA lyase RALTA_B2210 2393137 - 2394099 + | Putative transcription regulator, LysR family TERM 1702 2394122 - 2394145 + F 70 -7.4 -4.08394 | gap 1, overlap 2394106 GCGCAACTTCCTGTG CGTTTCGAGGG TTA CCC-CGAGGCG TTTTCGCAAGCATAT RALTA_B2211 2394287 - 2394979 + | Putative short-chain dehydrogenases/reductase (SDR) family protein RALTA_B2212 2395940 - 2394966 - | Putative transcription regulator, LysR family TERM 1703 2395231 - 2395197 - G 85 -17.9 -3.16881 | gap 1, overlap 2395199 CAGGCAGGTCAGCAA CAGCGCCGAGCCGCGC ACCA GC-CGGCTCGGCGCCA GGAAGCTCGACAAAC TERM 1704 2395229 - 2395199 - G 90 -20.5 -3.14602 | gap 1, overlap 2395197 GGCAGGTCAGCAACA GCGCCGAGCCGCGC ACCA GC-CGGCTCGGCGC CAGGAAGCTCGACAA TERM 1705 2395503 - 2395527 + g 70 -12.8 -3.35679 | overlap 2395505 CCCCTTCTCCAGTTC TTCGCGCGGC AGCTC GCCGCGCGTA TTGTGCGTGACCAGC TERM 1706 2395505 - 2395525 + g 77 -15.4 -3.24924 | overlap 2395503 CCTTCTCCAGTTCTT CGCGCGGC AGCTC GCCGCGCG TATTGTGCGTGACCA TERM 1707 2395830 - 2395857 + g 80 -16.2 -3.21695 | CGCCGGCTGGCTCAG CGCCATGCGCGC CGCC GCGCGCGAGGCG TTGCCTTCCTGGTAG RALTA_B2213 2396038 - 2396715 + | Putative peptidase C56 family protein TERM 1708 2396744 - 2396776 + T 85 -14.2 -3.56092 | gap 1, overlap 2396745 ACGCTCCTGCCGGTT TGCTCCCCTCTCCCG CTTG CGGGAGAGGG-AGCC TTTGCCCGGTGGTGG TERM 1709 2396745 - 2396775 + T 86 -17.7 -2.73441 | gap 1, overlap 2396744 CGCTCCTGCCGGTTT GCTCCCCTCTCCCG CTTG CGGGAGAGGG-AGC CTTTGCCCGGTGGTG RALTA_B2214 2399262 - 2396839 - | Putative penicillin G amidase precursor; peptidase S45 family TERM 1710 2398912 - 2398876 - G 70 -9.4 -3.86015 | gap 2 CACCCCCGCGACAAA GGCCT-CGGCCACG-CGC TTG GCATCGCTGCCGTAGGCC AGCCATTCGCGGTAC TERM 1711 2399130 - 2399080 - G 72 -6.2 -4.36914 | gap 3, opp_overlap 2399115 2399117 2399127, overlap 2399082 GCCCTGTGCATAAAA GGCG-TCG-TAGAGCGTGCCGGCAT AGAT ATGC-GGCACGCCCCAGCGGTCGAC CAGCACGCTGGCGGG TERM 1712 2399115 - 2399145 + g 71 -2.3 -4.62069 | opp_overlap 2399082 2399080, overlap 2399117 2399127 CATAGATATGCGGCA CGCCCCAGCGGTC GACCA GCACGCTGGCGGG TTTTTCAAGTCCGGG TERM 1713 2399362 - 2399318 - R 76 -13.5 -3.12142 | gap 1, overlap 2399316 2399314 TTCACACCGAAGATA GTGCATGG-CCGGCCGCGGC GCGAGT GCCGCGGCCGATCTCCGCAC GCCGCGTGGCGTGCA RALTA_B2215 2400981 - 2399398 - | Putative sulfite reductase [NADPH] flavoprotein alpha-component TERM 1714 2400824 - 2400780 - G 70 -14.9 -2.69151 | opp_overlap 2400781 2400785, overlap 2400777 2400810 GGCTGGCATAGACCA CCAGCGTCGCGCCGTCTTCCG TGC CGGAAAGCGCCGCCACCCTGG CGCGCCGCTGGCGGT apbE 2402000 - 2400993 - | Thiamine biosynthesis lipoprotein; apbE family RALTA_B2217 2402854 - 2402015 - | conserved hypothetical protein; putative exported protein RALTA_B2218 2403363 - 2402872 - | hypothetical protein RALTA_B2219 2404109 - 2403453 - | Conserved hypothetical protein, transmembrane TERM 1715 2404120 - 2404153 + r 71 -13 -3.09015 | overlap 2404122 GTCATGACGGGGGAT CGGCAGGCGCGGCC GGTACG GGCCGCGCCCGGTG TTGCCTGCATATGGG RALTA_B2220 2405406 - 2404438 - | Conserved hypothetical protein, UPF0065; putative exported protein RALTA_B2221 2406807 - 2405467 - | hypothetical protein TERM 1716 2406591 - 2406648 + g 70 -15.7 -2.71712 | gap 4, overlap 2406591 GCAACGCGTCATCCA GCG-ACGCC-GCC-CGGGCGCGGCCGGCT TCCC AGCCGAC-GCGTTCGAGGCTGGCGTGCGC GTTTGCCGGCACCAG RALTA_B2222 2408530 - 2406836 - | putative dihydroxy-acid dehydratase RALTA_B2223 2409458 - 2408523 - | Putative 3-hydroxyisobutyrate dehydrogenase family protein TERM 1717 2408802 - 2408790 - G 89 -3.3 -5.24129 | opp_overlap 2408797, overlap 2408792 GCGTGGCAGAAAAAA CTCCG ACG CGTAG CTGCGTCCGGTTCCG RALTA_B2224 2409838 - 2409455 - | putative metallothiol transferase TERM 1718 2409610 - 2409587 - G 78 -16.8 -3.05384 | GCCGCGGGCATGCAA CCGCTGGATG ACAT CATCCAGCGG CATCGACGCGATAAA RALTA_B2225 2409973 - 2410887 + | Putative transcription regulator, LysR Family RALTA_B2226 2412174 - 2410951 - | Putative chromate transporter TERM 1719 2411344 - 2411317 - G 91 -9 -4.90778 | gap 1, overlap 2411319 CGCAGCGAAAGAAAA CAGCGGCCCGGGC ATG GCCTGCGCCGC-G CCGTAGCCGGCCAGG TERM 1720 2411343 - 2411319 - G 83 -12.7 -4.07285 | overlap 2411317 CAGCGAAAGAAAACA GCGGCCCGGGC ATG GCCTGCGCCGC GCCGTAGCCGGCCAG TERM 1721 2412274 - 2412252 - H 83 -5.4 -5.00616 | CGGGTCGGCAAAAAA GCGAGGCAGG GAC CACGCCTGGC GCATCTGCCGTCGAC TERM 1722 2412296 - 2412325 + H 72 -4.2 -4.56597 | gap 1, opp_overlap 2412314 GCCGTCGACGGGAAG GGCTGTATCGCGC ACAAA GC-CGGCGCAGCC TTTTTCAACCGAACA RALTA_B2227 2412528 - 2414081 + | Putative methyl-accepting chemotaxis protein, transmembrane TERM 1723 2414163 - 2414142 - f 73 -12.9 -3.21695 | GTATGATGAAGCGAA GCTGGCCGC ACAG GCGGCCGGC CCAGTGCATCAGACC RALTA_B2228 2414209 - 2414460 + | Conserved hypothetical protein, transmembrane RALTA_B2229 2417684 - 2414433 - | Conserved hypothetical protein, signal peptide TERM 1724 2415758 - 2415726 - GT 74 -13.3 -3.29144 | opp_overlap 2415735 GTAGTGCTTGTAGAA GCCGGCCATGTAGGC GCT GCCTTCCTGGTCGGC GAAGCGCTCCAGGTA RALTA_B2230 2417764 - 2417567 - | hypothetical protein TERM 1725 2417831 - 2417785 - R 77 -15.7 -2.62184 | opp_overlap 2417795, overlap 2417811 2417814 CCTGTCTTGATATTA GTAGGAGTCGCGCCCGCGTGC ATCAA GCACGCGCGCGCGACGCGCGC CGTTGCAGGCGGGCG TERM 1726 2417795 - 2417846 + r 71 -13.6 -2.52464 | gap 1, opp_overlap 2417785 2417811 2417814 TATTAGTAGGAGTCG CGCCCGCGTGCATCAAGCACGCG CGCGCGA CGCGCGCC-GTTGCAGGCGGGCG TCACTTCAGGCAGCG RALTA_B2231 2418952 - 2417915 - | Putative oxidoreductase; aldo/keto reductase 2 family; putative oxidoreductase related to aryl-alcohol dehydrogenases TERM 1727 2418247 - 2418293 + g 70 -15.2 -2.72344 | CCATCATGCGGCGGT CG-GCGCGGCC-GGCGCGCGTGCC CTC GGC-CG-GCGCCTGGCCGGGCGCG TACTTGCCGGTCAGC RALTA_B2232 2419880 - 2419017 - | Conserved hypothetical protein, SurF1-family protein, transmembrane TERM 1728 2419288 - 2419252 - G 74 -10.7 -3.72576 | overlap 2419254 GCGGCGTCGATGAAA TACGGCGCGACCTGGTT TCC ATCCAGGCCGCGGCGCG CGGCGATCGCCGCCA TERM 1729 2419286 - 2419254 - G 82 -15.5 -3.44848 | overlap 2419252 GGCGTCGATGAAATA CGGCGCGACCTGGTT TCC ATCCAGGCCGCGGCG CGCGGCGATCGCCGC cyoD2 2420284 - 2419877 - | TRANSMEMBRANE CYTOCHROME O UBIQUINOL OXIDASE (SUBUNIT IV) OXIDOREDUCTASE PROTEIN TERM 1730 2420233 - 2420265 + g 74 -16.4 -2.82516 | gap 1 GTCCGTGGTCGTGGC CGCTTGCGGGCCCAT GTCC GTGGGCC-GCAAGCG TGTCGTCGTGCGCGC cyoC2 2420955 - 2420281 - | cytochrome o ubiquinol oxidase, subunit III cyoB2 2422951 - 2420948 - | cytochrome o ubiquinol oxidase, subunit I TERM 1731 2421750 - 2421702 - G 70 -8.8 -3.91897 | gap 2, overlap 2421703 TTGTGCAGCGAGAAA TCG-G-CCGGCGGCACCGCCAGCA GCA CGCCGGTCATGCCGCCGATCACGA ACGTCACCATAAACC cyoA2 2424071 - 2423046 - | cytochrome o ubiquinol oxidase, subunit II RALTA_B2237 2424215 - 2425531 + | Putative General substrate transporter, MFS family TERM 1732 2425580 - 2425590 + F 76 -8.2 -4.11216 | AGTCGCGCACAGTGC CCGG AGG CCGG TTTTGCCGGTGCACG TERM 1733 2425921 - 2425897 - g 73 -10 -3.84406 | gap 1, overlap 2425894 2425898 CTTCCAGTACAAGAA CGGCGCCGCGT TCGC ACGCGGCAC-G CAGCGCACCGCATTC RALTA_B2238 2425676 - 2426905 + | Putative monooxygenase, FAD-binding fabG2 2427000 - 2427731 + | 3-oxoacyl-[acyl-carrier-protein] reductase gst-like 2428465 - 2427812 - | glutathione S-transferase, theta family TERM 1734 2428025 - 2427970 - G 70 -12.7 -3.31905 | gap 3, overlap 2427968 2428008 AGTCCGCATAGAACA GCGATGGCGCCGCGGCGCAAT-CCGCCA GCG TGAAGGCATCGC-CCGCGGC-CCATTGC CGCGTCGCCAGTTCG TERM 1735 2428536 - 2428503 - R 91 -18.1 -3.15544 | opp_overlap 2428501 GGGTATGGCCAGGAA GCTTCGACGCGCGGC TAGC GCTGCGCGGCGAAGC GATCGGTTGCGGCAA RALTA_B2241 2429473 - 2428517 - | Proline iminopeptidase (Prolyl aminopeptidase) TERM 1736 2429083 - 2429099 + g 73 -7.9 -4.11216 | overlap 2429084 2429086 GCAGCACCAGCTCGC TCACCCG CTG CGGGTGC TTTTGCGCATAGGCC RALTA_B2242 2430028 - 2429543 - | hypothetical protein RALTA_B2243 2430351 - 2430088 - | hypothetical protein RALTA_B2244 2431307 - 2430420 - | putative transcription regulator, LysR-family TERM 1737 2430689 - 2430645 - G 82 -15 -3.53224 | gap 1 GATCTCGTCGGTAAA GCGCAGGCCGGCCT-GTGG ATCGGCCA CCTCGACGCCGGCCTGCGC CAGCCATCGGTGCCA RALTA_B2245 2431461 - 2431859 + | hypothetical protein RALTA_B2246 2431856 - 2432986 + | putative NADH:flavin oxidoreductase RALTA_B2247 2433997 - 2432999 - | Putative transcription regulator, AraC femily TERM 1738 2435068 - 2435032 - g 75 -4.5 -4.57073 | gap 3, overlap 2435034 GATCCCGCGGAAAAA CAGGC-AC-TGGCCGACG AGGT CTTCGGCCACGTCGCC-G CGGGCCGCATCCACA TERM 1739 2435067 - 2435034 - g 70 -8.2 -3.90048 | gap 2, overlap 2435032 TCCCGCGGAAAAACA GGC-AC-TGGCCGACG AGGT CTTCGGCCACGTCGCC GCGGGCCGCATCCAC TERM 1740 2435110 - 2435094 - g 72 -13.7 -3.16191 | CCACATCGGCATCAA CCAGCGC TAT GCGCTGG AAGACGCGGTCCAGG qor2 2434201 - 2435181 + | quinone oxidoreductase, NADPH-dependent TERM 1741 2435655 - 2435631 - g 70 -12.8 -3.29471 | GCCGCAGGACATCAA GGCGCGCATC GAAGG GCTGCGCGCC AAGCACAGCATCGAA RALTA_B2249 2435206 - 2436054 + | Putative taurine dioxygenase TERM 1742 2437230 - 2437263 + G 77 -15.2 -3.14132 | opp_overlap 2437208 CGTGCCGCGCGACGG CAGCGCGCGCGGCG AGATCG TGCTGCGCGCGCCG TTCCTGACCCGCGCC RALTA_B2250 2436070 - 2437716 + | Putative acyl-coA synthetase and ligase TERM 1743 2437766 - 2437733 - T 100 -24.1 -4.25104 | opp_overlap 2437738 2437759, overlap 2437738 CGGGCGGCAGTAAAA CAAAAGGGCAGCCTC TTGC GAGGCTGCCCTTTTG CATTGCCAGCAGGGA TERM 1744 2437761 - 2437738 - T 100 -18.2 -5.13722 | opp_overlap 2437738 2437759, overlap 2437733 GGCAGTAAAACAAAA GGGCAGCCTC TTGC GAGGCTGCCC TTTTGCATTGCCAGC TERM 1745 2437738 - 2437761 + T 100 -18.2 -4.27316 | opp_overlap 2437738 2437733, overlap 2437759 GGCAGTAAAACAAAA GGGCAGCCTC TTGC GAGGCTGCCC TTTTGCATTGCCAGC RALTA_B2251 2438757 - 2437783 - | conserved hypothetical protein, UPF0065 TERM 1746 2438539 - 2438551 + g 71 -10.5 -3.78934 | GATGGCGATGCCACC GCCCG CGC CGGGC TTGTTGTCGACCACA RALTA_B2252 2438959 - 2438768 - | hypothetical protein TERM 1747 2439000 - 2439043 + r 78 -12.2 -3.78934 | gap 1 GGGCCGGCCGCATAG CCGGCC-CCGCCCGCAGCCGT CAG GCGGCCGCGCGCCGCGGCAGG TTCTTCTGCCCCGAC RALTA_B2253 2440077 - 2439019 - | hypothetical protein TERM 1748 2441075 - 2441112 + G 76 -7 -4.2828 | opp_overlap 2441073, overlap 2441075 2441102 GTTACCTGGAGAACC G-CGAGCGGCCGCTGTCG GAAG TGGCGGC-GCTGCTCGGC TTTTCGTCGCTGAGC RALTA_B2254 2440195 - 2441196 + | Putative transcription regulator, AraC family RALTA_B2255 2441279 - 2442394 + | hypothetical protein RALTA_B2256 2442394 - 2443290 + | hypothetical protein TERM 1749 2443294 - 2443270 - T 76 -10.7 -3.68073 | overlap 2443291 GACGTGATCGAACAA CTCCTTGCCCG AAT CGGATAAGGAG CGCAACCACGCGCCG RALTA_B2257 2444469 - 2443336 - | Putative outer membrane porin protein TERM 1750 2443996 - 2443957 - G 74 -12.8 -3.60296 | gap 1, opp_overlap 2443956 CAGCCCGACGCCAAA CGACCAGTGCGCGCGCGCC GTC AGCGGGC-CGAACTGGCCG GTGTACTTCACGGTG RALTA_B2258 2445158 - 2444565 - | hypothetical protein RALTA_B2259 2446532 - 2445177 - | Putative transporter, MFS family TERM 1751 2446724 - 2446705 - R 100 -15 -6.02914 | opp_overlap 2446705 CCGAGACAAAAAAAA CCGGCACC CGAA GGTGCCGG TTCCTGACCGTCGCG TERM 1752 2446705 - 2446724 + r 80 -15 -3.15544 | opp_overlap 2446705 CCGAGACAAAAAAAA CCGGCACC CGAA GGTGCCGG TTCCTGACCGTCGCG argG 2448091 - 2446766 - | argininosuccinate synthetase TERM 1753 2448294 - 2448254 - H 75 -12.3 -3.55444 | overlap 2448255 CGCCCACGCGCCAAA CGCGGGCGTCGGCGGGGGC GCC GGCGCCACCTGCGCCCACG TCGGCCGCACACCAT RALTA_B2261 2448416 - 2449579 + | putative formyl-CoA transferase RALTA_B2262 2449623 - 2450582 + | conserved hypothetical protein; putative exported protein RALTA_B2263 2450598 - 2451374 + | Putative enoyl-CoA hydratase/isomerase RALTA_B2264 2452337 - 2451390 - | Putative transcription regulator, lysR family TERM 1754 2451420 - 2451444 + g 78 -17.9 -2.70932 | GGCCATGGCGCCGCC TTCGCGCGTGG CCA CCACGCGCGGA TCGTTGAGCAGGAAC TERM 1755 2452477 - 2452489 + H 88 -7.7 -4.93877 | ACCGCGCATTCGATG TGGAC GCC GTCCA TTTTCTTTGCTAAGG TERM 1756 2452551 - 2452527 - H 70 -7.8 -4.0371 | gap 1 GACGGCGTACACAAA CGTGCGCGCCA TTGC CAGCGCGC-CG GTTCGCGGCCAGAGT RALTA_B2265 2452637 - 2453062 + | hypothetical protein RALTA_B2266 2453371 - 2453150 - | hypothetical protein RALTA_B2267 2453156 - 2453359 + | conserved hypothetical protein; SlyX family RALTA_B2268 2453461 - 2454030 + | conserved hypothetical protein; putative exported protein RALTA_B2269 2455276 - 2454032 - | putative transporter, MFS family RALTA_B2270 2456332 - 2455412 - | conserved hypothetical protein; putative membrane protein; putative metabolite efflux pump TERM 1757 2456044 - 2456030 - G 83 -9.2 -4.61873 | overlap 2456032 GGCCAGAAAGTAAAA GACGGC GTA GCCGCC GATCAGCAGCAGCCC TERM 1758 2456045 - 2456032 - G 73 -9.5 -3.91676 | overlap 2456030 CCAGAAAGTAAAAGA CGGCG TAGC CGCCG ATCAGCAGCAGCCCC TERM 1759 2456286 - 2456315 + g 74 -13.5 -3.3516 | overlap 2456285 2456278 2456287 CGCGTGGCGAGCGTG TTGCGCGGGGCGT CGAA GCGCGCCGCGCAG TCTTCGTTGTTGGTC TERM 1760 2456675 - 2456658 - R 81 -9.9 -4.1552 | GAGGCCTTGAAGAAA GATCGAC CGGC GTCGATC AACGTGGTGTGGCGA npdA 2457578 - 2456715 - | NAD-dependent deacetylase; Regulatory protein SIR2 homolog TERM 1761 2457112 - 2457070 - G 74 -12.7 -3.60098 | gap 1 AGCGGCGATTCGAAA TGCACGTCGCCATCG-GCCG CGGG CGGCGCGATCACGTCGCGCA ACGCCGCGTTGCGCG RALTA_B2272 2458078 - 2457614 - | hypothetical protein TERM 1762 2457974 - 2458005 + gH 83 -12.2 -4.07885 | gap 1 ATTGAATTGTTTTTG CGCGCGGTGCGGCGC AGG GC-CCGCACGGCACG TTTTGCCGGAAGATA TERM 1763 2459163 - 2459120 - gH 81 -15.2 -3.01712 | gap 1 GCCGCCGGCGCAATA TGCCGAGCTGC-GCGCCGCCC AGC AGGCGGTGCAGCCGCCCGACA CCCGCCCCGTCGACG TERM 1764 2459769 - 2459825 + GH 74 -14.3 -2.63073 | overlap 2459768 2459798 ACGCTCAGCACCGGC CCGG-CGGCGCTGGCGCCGGGTCCGGG CAGTA TCCGG-CGCGGGGCCATCACCGGCCGG CTCTTCTTCGACCAG RALTA_B2273 2458077 - 2460359 + | putative esterase of the alpha-beta hydrolase superfamily, patatin-like phospholipase domain; putative exported protein TERM 1765 2460476 - 2460498 + FH 100 -14.9 -5.24129 | opp_overlap 2460464 TGACAACCTTCCCCG GTCGCCGCT TCCCC AGCGGCGAC TTTTTTATGGGCGCC TERM 1766 2460746 - 2460769 + G 72 -8.8 -3.96624 | gap 1, overlap 2460755 2460759 CTGCGGCTGCCCCAG GGCGACACCGC ATG GCGGA-TCGCC TTTGTGATCGGACTG RALTA_B2274 2460599 - 2461033 + | Conserved hypothetical protein, transmembrane domains RALTA_B2275 2461037 - 2461468 + | Conserved hypothetical protein, transmembrane, signal RALTA_B2276 2461559 - 2462407 + | Putative transcription regulator, iclR family RALTA_B2277 2463294 - 2462485 - | hypothetical protein TERM 1767 2463188 - 2463209 + g 71 -11.5 -3.58536 | overlap 2463181 2463158 2463180 2463200 2463201 CGGTCGTCCGCTGCC CCGGCGTCG GTTT CGGCGTCGG TTTCGGCGTCGGTTT RALTA_B2278 2464380 - 2463499 - | putative transcription regulator, LysR family TERM 1768 2464827 - 2464865 + G 72 -13.9 -3.14931 | gap 2 CCGGACGTGCACGAC GGCCGTGCGCAG-GCC-CC GCT GGCGGCGCTGCGCATGGGC TTCCTGACCAATGCG RALTA_B2279 2464515 - 2465138 + | putative amino acid efflux protein RALTA_B2280 2465703 - 2465122 - | Putative 2',5' RNA ligase ogt 2466229 - 2465729 - | Methylated-DNA--protein-cysteine methyltransferase RALTA_B2282 2467707 - 2466226 - | Putative methylated-DNA-protein-cysteine methyltransferase, DNA binding domain TERM 1769 2468536 - 2468554 + G 74 -12.4 -3.54459 | overlap 2468538 ATCCCGCCGCCACGC TGGCGCGC ATC GCGCGCTA TTTCGGGCCGATTCC TERM 1770 2468538 - 2468552 + G 70 -12.8 -3.34894 | overlap 2468536 CCCGCCGCCACGCTG GCGCGC ATC GCGCGC TATTTCGGGCCGATT TERM 1771 2469899 - 2469920 + G 72 -9.3 -4.015 | overlap 2469897 CTTCGATGGCGCGGC TGCCGCCGC GAAC GCGGCAGCG TTGTTTGGTGACTGG RALTA_B2283 2467782 - 2470664 + | Putative zinc protease, Peptidase M16 family; signal peptide RALTA_B2284 2470849 - 2471223 + | hypothetical protein TERM 1772 2471282 - 2471260 - T 100 -15.6 -4.51743 | opp_overlap 2471260 2471263 TCACCATGAAATAAA GAAGCCGCCC TGC AGGCGGCTTC TGTTACGTCGTGCCG TERM 1773 2471260 - 2471282 + T 78 -14.9 -3.10796 | opp_overlap 2471260, overlap 2471263 TCACCATGAAATAAA GAAGCCGCC CTGCA GGCGGCTTC TGTTACGTCGTGCCG TERM 1774 2471263 - 2471279 + T 76 -10.8 -3.69702 | opp_overlap 2471260, overlap 2471260 CCATGAAATAAAGAA GCCGCC CTGCA GGCGGC TTCTGTTACGTCGTG RALTA_B2285 2471913 - 2471326 - | hypothetical protein RALTA_B2286 2473088 - 2471931 - | Putative acyl-CoA dehydrogenase TERM 1775 2472755 - 2472771 + g 71 -10.1 -3.71998 | CGCCGCTGGCGATGC GCGGCAG GTA CTGCTGC TTCTGTTCCTCGGTG TERM 1776 2473257 - 2473236 - R 72 -12.3 -3.2794 | CGCGACGGACAGCAA GCCGGCCAT GCCA ATGGCCAGC GCCGCCAGCGCATCC RALTA_B2287 2474999 - 2473218 - | Putative oligopeptide transporter; OPT superfamily TERM 1777 2475056 - 2475108 + H 86 -15.7 -3.65353 | gap 3, opp_overlap 2475044 2475039, overlap 2475057 ATAGGCGAGGCCTGG CCCCGCGGTGGCG-GCTGGT-TTGCG TTAC CGCAGTACCGGCGCGG-ACCGCGGGG TTTACACTAGTTTCG RALTA_B2288 2475184 - 2476872 + | Putative monooxygenase, FAD-binding domain; FAD dependent oxidoreductase RALTA_B2289 2476862 - 2477089 + | hypothetical protein RALTA_B2290 2477086 - 2477559 + | Putative transcription regulator, MarR family RALTA_B2291 2478019 - 2477564 - | hypothetical protein TERM 1778 2478127 - 2478161 + r 73 -11.2 -3.55563 | opp_overlap 2478146 2478150, overlap 2478128 CCCGTTTCTGCGTGC TGCGGCGGGGCCTGGC AAA GCCATGCCGCGGCGCC TTTGGCGCCTCCAGT TERM 1779 2478128 - 2478160 + r 75 -14.7 -2.73124 | opp_overlap 2478146 2478150, overlap 2478127 CCGTTTCTGCGTGCT GCGGCGGGGCCTGGC AAA GCCATGCCGCGGCGC CTTTGGCGCCTCCAG RALTA_B2292 2479688 - 2478363 - | Putative sensory histidine kinase in two-component regulatory system; signal peptide RALTA_B2293 2480401 - 2479688 - | Putative response regulator in two-component regulatory system glk 2481414 - 2480404 - | Glucokinase pgl 2482138 - 2481458 - | 6-phosphogluconolactonase zwf2 2483631 - 2482174 - | glucose-6-phosphate dehydrogenase TERM 1780 2482405 - 2482391 - G 70 -12.8 -3.2963 | opp_overlap 2482401 AGCAGCCGTTCATAA GCGCCG GCG CGGCGC ACCTTGAACGAATTG TERM 1781 2484192 - 2484221 + G 74 -13.6 -3.28924 | TGCGATGGCGTCACG CAGGGACAGGAC GGCATG GACCTGTCCCTG TTCTCGCGCGACGTG edd 2483838 - 2485685 + | 6-phosphogluconate dehydratase RALTA_B2298 2486629 - 2485682 - | small-conductance mechanosensitive channel RALTA_B2299 2487825 - 2486947 - | putative transcription regulator, AraC family RALTA_B2300 2489292 - 2488006 - | putative permease, Major facilitator Superfamily TERM 1782 2488651 - 2488609 - G 71 -11.3 -3.57561 | GGCGAATCCTGCAAA GACGGTGCGCAC-GCTGACCG GCG CGGTCAGCCGTT-GCGCCGCC TGGCGCAGCGTGATG RALTA_B2301 2489598 - 2491775 + | TonB-dependent receptor TERM 1783 2491840 - 2491805 - T 86 -16.2 -3.19192 | opp_overlap 2491807 2491813, overlap 2491813 CGCCAGGCAACGGAA CGGCAAAACGGCTCGC CATG GCGAGCCGTTTTGCTT TGCAGAGCACGACGA TERM 1784 2491807 - 2491838 + T 100 -23.2 -3.53012 | opp_overlap 2491805 2491813, overlap 2491813 CCAGGCAACGGAACG GCAAAACGGCTCGC CATG GCGAGCCGTTTTGC TTTGCAGAGCACGAC TERM 1785 2491813 - 2491832 + T 100 -15 -4.54727 | opp_overlap 2491805 2491813, overlap 2491807 AACGGAACGGCAAAA CGGCTCGC CATG GCGAGCCG TTTTGCTTTGCAGAG TERM 1786 2491832 - 2491813 - T 100 -15 -4.20354 | opp_overlap 2491813 2491807, overlap 2491805 AACGGAACGGCAAAA CGGCTCGC CATG GCGAGCCG TTTTGCTTTGCAGAG prfC 2493457 - 2491856 - | peptide chain release factor RF-3; GTP-binding factor RALTA_B2303 2494576 - 2493653 - | putative ribonuclease BN RALTA_B2304 2494791 - 2495018 + | hypothetical protein; putative exported protein RALTA_B2305 2495467 - 2495667 + | hypothetical protein TERM 1787 2495725 - 2495740 + F 100 -4.6 -5.40072 | GCGGATTAGTGTTCC GTCCCC CGGC GGGCAC TTTTTTTCCACAGGG RALTA_B2306 2495758 - 2496165 + | conserved hypothetical protein; putative exported protein TERM 1788 2496221 - 2496188 - T 85 -14.7 -3.57144 | gap 1, opp_overlap 2496189, overlap 2496189 GCCGGCACGGGGAAA GGCGGAACCGGCGA GCGGACG TCGCCGGTTCC-CC TTTCCCGCTGGCGCC TERM 1789 2496189 - 2496221 + T 85 -14.9 -3.57144 | opp_overlap 2496188 2496189 CCGGCACGGGGAAAG GCGGAACCGGCGA GCGGACG TCGCCGGTTCCCC TTTCCCGCTGGCGCC TERM 1790 2496221 - 2496189 - T 75 -14.9 -2.74144 | opp_overlap 2496189, overlap 2496188 CCGGCACGGGGAAAG GCGGAACCGGCGA GCGGACG TCGCCGGTTCCCC TTTCCCGCTGGCGCC RALTA_B2307 2497655 - 2496288 - | putative SIGMA-54 INTERACTING TRANSCRIPTION REGULATOR PROTEIN TERM 1791 2497230 - 2497240 + g 70 -8.2 -3.83026 | overlap 2497229 GCCGATCATGGTGCC GCGC GAC GCGC TTTCCTGTGGGCGCG RALTA_B2308 2498110 - 2497781 - | hypothetical protein TERM 1792 2497843 - 2497876 + g 75 -5.2 -4.58395 | gap 1, overlap 2497860 2497861 CGTCCGCGCCCGGCT GAAGCTGCGCGA-GG ATGCG CCGTCGCACGGCCTC TTTTTCGCGCATCAA TERM 1793 2498485 - 2498507 + r 70 -10.5 -3.54129 | opp_overlap 2498487, overlap 2498487 TAGACCGGAGTCAAG AAGGGGCGC TTGCC GCGCCCCTC TTTGCCACGCCTATA TERM 1794 2498487 - 2498505 + r 74 -13.1 -3.34715 | opp_overlap 2498487, overlap 2498485 GACCGGAGTCAAGAA GGGGCGC TTGCC GCGCCCC TCTTTGCCACGCCTA TERM 1795 2498505 - 2498487 - R 81 -13.1 -3.68073 | opp_overlap 2498487 2498485 GACCGGAGTCAAGAA GGGGCGC TTGCC GCGCCCC TCTTTGCCACGCCTA TERM 1796 2498882 - 2498863 - R 100 -12.1 -5.06414 | opp_overlap 2498863 CCTGGGCAACAAAAA GGGCGGC TCCTGG GCCGCCC TGCTATCGGGTGCTG RALTA_B2309 2500278 - 2498914 - | putative permease, inner membrane protein, Xanthine/uracil/vitamin C permease family TERM 1797 2500655 - 2500681 + H 80 -5.9 -4.68446 | gap 1, overlap 2500654 2500656 CCTTGAGTTCCCCGT G-TCGGATGACG TCTT CGTCATGCGATC TTTTCTGTCCTTTTT TERM 1798 2500656 - 2500679 + H 74 -9.6 -3.92324 | overlap 2500654 2500655 CTTGAGTTCCCCGTG TCGGATGACG TCTT CGTCATGCGA TCTTTTCTGTCCTTT cspD 2500709 - 2500912 + | Cold shock-like protein TERM 1799 2500957 - 2500974 + F 100 -14.1 -5.86976 | opp_overlap 2500957 CCGCACAGCGTAGAA CCCCGCC CCAA GGCGGGG TTTTTTGTTTTCTGC TERM 1800 2500974 - 2500957 - f 77 -14.1 -3.34962 | opp_overlap 2500957 CCGCACAGCGTAGAA CCCCGCC CCAA GGCGGGG TTTTTTGTTTTCTGC RALTA_B2311 2502085 - 2502285 + | hypothetical protein