TransTermHP v2.07 (built on Jan 21 2009) 25 bins; sample size is 20000000 --pval-conf=/fs/szasmg2/carlk/TTupdate2/expterm.dat --gc=-2.3 --au=-0.9 --gu=1.3 --mm=3.5 --gap=6 --max-len=59 --min-stem=4 --max-loop=13 --min-loop=3 --uwin-length=6 --uwin-require=3 --max-hp-score=-2 --max-tail-score=-2.5 --loop-penalty=1,2,3,4,5,6,7,8,9,10,11 --start-cut=0 --end-cut=25 Genes: 0.399829 %AT, 4022228 nt, 37019 terms. Intergenic: 0.472174 %AT, H2T: 350576 nt, 2881 terms; T2T: 93745 nt, 1954 terms; H2H: 102809 nt, 1716 terms. Each terminator entry starts in column 3 and is of the form: term # start - end +/- regionconf hp tail | notes Followed by the sequence of the 5' tail, 5' stem, loop, 3' stem, and 3' tail. Genes are interspersed, and start the first column. SEQUENCE gi|71905642|ref|NC_007298.1| Dechloromonas aromatica RCB, complete genome (length 4501104) Daro_0001 151 - 1548 + | chromosomal replication initiator protein DnaA TERM 1 1683 - 1673 - f 75 -5.4 -4.70659 | TCGCAGATGCAAAAA TCTG ACC CAGA CCATTGAAATTAAAA Daro_0002 1758 - 2864 + | DNA polymerase III, beta subunit TERM 2 2909 - 2889 - f 100 -16.9 -3.41234 | opp_overlap 2889 CAGCAATTGAAGGAA GGTCAGCCC GCC GGGCTGACC TTTTGCAGTTTCACG TERM 3 2889 - 2909 + F 100 -16.9 -4.24002 | opp_overlap 2889 CAGCAATTGAAGGAA GGTCAGCCC GCC GGGCTGACC TTTTGCAGTTTCACG TERM 4 3220 - 3201 - g 76 -12.8 -3.35996 | CAGCGTCATCGACAA CGGCCGGG GTAT CCCGACCG GCGTCAAGATGGACG TERM 5 3656 - 3674 + G 71 -5.3 -4.32436 | TCGACCAGCGTACCG GCAAGGA AGAAC TCTTTGC TTTTGCTGGTGGTGT gyrB 2938 - 5442 + | DNA gyrase subunit B TERM 6 5498 - 5468 - f 91 -11.8 -4.11692 | opp_overlap 5472, overlap 5472 CACGTACCGCCAAAA TGAAGGCCAGCCGA TTT CCGGCTGGCCTTTT TCTTGACTTGTGGAC TERM 7 5494 - 5472 - f 100 -17 -3.67622 | opp_overlap 5472, overlap 5468 TACCGCCAAAATGAA GGCCAGCCGA TTT CCGGCTGGCC TTTTTCTTGACTTGT TERM 8 5472 - 5494 + F 100 -16.3 -5.14645 | opp_overlap 5472 5468 TACCGCCAAAATGAA GGCCAGCCG ATTTC CGGCTGGCC TTTTTCTTGACTTGT Daro_0004 5514 - 5963 + | histidine triad (HIT) protein Daro_0005 5976 - 6428 + | D-tyrosyl-tRNA deacylase TERM 9 6432 - 6417 - T 73 -9 -3.61356 | opp_overlap 6417, overlap 6428 ACGATCGACTCCAAA GTGCCT GAAT AGGCAC TATAGTGCCTGACTC Daro_0006 7247 - 6432 - | silent information regulator protein Sir2 Daro_0007 8477 - 7338 - | response regulator receiver modulated metal dependent phosphohydrolase Daro_0008 12823 - 8504 - | PAS TERM 10 9691 - 9714 + g 84 -11 -4.11585 | CCTCATGGTCGTAGG CGGTCGCCAT GACG ATGGCGGCTG TTCTTTCTGGTCCAT TERM 11 10225 - 10238 + g 75 -8.1 -4.14392 | opp_overlap 10223 10224 CGATGACTTCAAAGC CGAGG TCGA CCTCG TTTTCACGGTTGGCG TERM 12 10277 - 10294 + g 76 -9.9 -3.76492 | TACCGTGACCGTGAT TTCACCG GCTT CGGTGAA TTTGATCGCATTGCC TERM 13 10677 - 10699 + g 72 -11.2 -3.32844 | opp_overlap 10677 ATGTTGGCCAGGAAA TCCGCCTTGG CTG CCGCGGCGGA TTCTGCCGTGGCGCG TERM 14 10699 - 10677 - G 71 -9 -3.72695 | opp_overlap 10677 ATGTTGGCCAGGAAA TCCGCCTTGG CTG CCGCGGCGGA TTCTGCCGTGGCGCG TERM 15 11202 - 11228 + g 81 -4.3 -4.88067 | gap 1, overlap 11204 CGGACGGCAGCAATC TGGACGTCGCCC CAGT GGGTGTCG-CCG TTTTTGTCGATGAAT Daro_0009 13990 - 12950 - | ApbE-like lipoprotein Daro_0010 14994 - 13975 - | glutathione synthetase TERM 16 14771 - 14802 + g 70 -10.3 -3.53012 | gap 2 AGGTGCAGCGCCTCG CCGGA-GATG-CCAC CGGC GTGGGCATCATCCGG TTTGCGCCAGCCGAG TERM 17 14948 - 14930 - G 74 -6 -4.4767 | GGATCGAGCACAAAA GCCAGT TTCAGGG ACTGGC TGCTGCCGCCGAGCA Daro_0011 16287 - 15001 - | glutamate--cysteine ligase GshA Daro_0012 17488 - 16355 - | response regulator receiver TERM 18 17582 - 17569 - H 71 -2.3 -5.01732 | AAGTGCTTGAAAAAA GGTAG AATT CGACC CCTTGTTTTGCAGCT TERM 19 17652 - 17664 + G 76 -9.1 -4.11371 | ATCACCATGCAGTTC GGGGT CAA ACCCC TTTTCGAAAATGTTA Daro_0013 17619 - 19241 + | ABC transporter related TERM 20 19300 - 19266 - T 100 -20.2 -3.53012 | opp_overlap 19271, overlap 19271 CCTTTCGGGGGCAAA CAAAAGGCCGAAGCAC AAT GTGCTTCGGCCTTTTT CAATTCTGCCTCGCG TERM 21 19295 - 19271 - T 100 -20.1 -4.86731 | opp_overlap 19271, overlap 19266 CGGGGGCAAACAAAA GGCCGAAGCAC AAT GTGCTTCGGCC TTTTTCAATTCTGCC TERM 22 19271 - 19295 + T 100 -20.1 -4.78149 | opp_overlap 19271 19266 CGGGGGCAAACAAAA GGCCGAAGCAC AAT GTGCTTCGGCC TTTTTCAATTCTGCC Daro_0014 19825 - 19334 - | hypothetical protein TERM 23 19805 - 19787 - G 77 -14.6 -2.70932 | CGTCGCGGTTAATGA GGCAGCCA CGA TGGCTGCC ACAGTCAGAATACGT Daro_0015 20374 - 19904 - | hypothetical protein Daro_0016 20514 - 21221 + | ribosomal small subunit pseudouridine synthase A TERM 24 21477 - 21459 - g 75 -8.1 -4.183 | overlap 21471 TCAAGCTGGAAGAAA TCGCCGA AGCAA CCGGCGA TCCGATGACCGGTCA Daro_0017 21218 - 22132 + | LysR family transcriptional regulator TERM 25 22186 - 22206 + T 100 -13.3 -4.8622 | opp_overlap 22186 GCCTGAAATGAAAAA GCCCTCGAT TTT GTCGAGGGC TTTTTGCTTCAAGCA TERM 26 22206 - 22186 - T 100 -12.6 -4.98531 | opp_overlap 22186 GCCTGAAATGAAAAA GCCCTCGA TTTTG TCGAGGGC TTTTTGCTTCAAGCA Daro_0018 24750 - 22231 - | DNA topoisomerase III TERM 27 22463 - 22479 + g 70 -4.3 -4.57073 | overlap 22465 CGGAAATCGCAGGTC TTGGCCG GGC CGACCGA TTTTTCGCAGACGTA TERM 28 22921 - 22959 + g 72 -13.9 -2.61264 | opp_overlap 22939, overlap 22920 GTGACGGGTCATTTC GGCGATTTCACGCATGA ACTCG TCGCGCGTGAATTCGCC CTTCTCGATACGGCC Daro_0019 25903 - 24827 - | SMF protein TERM 29 25845 - 25815 - G 91 -14 -3.84451 | opp_overlap 25811, overlap 25797 25796 25795 TCCGGTAAACCGAAA GCGGCGAGAAGC TTTCTTT GCGTCTCGCCGC CGATGCCCGGGATCA Daro_0020 26931 - 25900 - | peptidoglycan-binding LysM Daro_0021 27075 - 27578 + | peptide deformylase fmt 27575 - 28498 + | methionyl-tRNA formyltransferase TERM 30 29004 - 29032 + G 75 -8 -4.21314 | overlap 29005 ACCATCTCGGCGACC ATGGCCGGGGCC ATTTC GGCACTGGCCAA TTTTGCGATGTTCTT Daro_0023 28557 - 29399 + | heat shock protein HtpX Daro_0024 29759 - 29409 - | hypothetical protein TERM 31 29476 - 29491 + g 74 -6 -4.46926 | overlap 29478 29478 CTAACCACGGCCAGA CTGGGG CGTT CCCCCG TTTTCTGGTGACGTA TERM 32 29802 - 29777 - R 72 -10.3 -3.33815 | opp_overlap 29797 29798, overlap 29778 AGCCTCCTGAACGAA CGGGCAGCCGG CAAG CCAGCCGCCCT CGGTGCTTTAAAGGG TERM 33 29801 - 29778 - R 84 -13.8 -2.60075 | opp_overlap 29797 29798, overlap 29777 GCCTCCTGAACGAAC GGGCAGCCGG CAAG CCAGCCGCCC TCGGTGCTTTAAAGG Daro_0025 30391 - 29810 - | peptidase C56, PfpI TERM 34 29877 - 29846 - G 71 -6.6 -4.18934 | gap 1 GAGCAGGGGAAGAAA CTTGGCCAGC-CA GGCCGGA TGCGCTGGCCAGG CCGGAGCCGTAACCA Daro_0026 30889 - 30494 - | S-adenosylmethionine decarboxylase related Daro_0027 31804 - 30899 - | hypothetical protein TERM 35 31925 - 31935 + GH 72 -8.2 -3.7282 | overlap 31902 TGCCGGGCAGAGCCT GGCC GAC GGCC TTCTTGCTCGAGTCG Daro_0028 31839 - 33098 + | Fmu, rRNA SAM-dependent methyltransferase TERM 36 33103 - 33123 + GF 84 -5.3 -4.96501 | opp_overlap 33103, overlap 33105 AGCATGCTTAAACGA CTGCGCC TCTGGCT GGCGCTG TTTGTTTTTGTACCG TERM 37 33351 - 33334 - gf 76 -5.5 -4.72272 | TGGCTGGACGAAAAA CTGGCCA GCCG CAGCCAG ACATATCGCCTTTCT Daro_0029 33061 - 33672 + | proline rich signal peptide protein TERM 38 34035 - 34020 - g 74 -6.1 -4.56597 | GTCCGGGTGGAAAAA GCCCT CGAATC AGGGC TGCAACTGGGGCGTT TERM 39 34171 - 34188 + G 80 -3.4 -5.08824 | gap 1, opp_overlap 34170, overlap 34148 TGCGCGAAGAGAAGG GCG-TGC AGACG GCAGCGC TTTTTTCGGTGGGCG Daro_0030 33669 - 35825 + | multi-sensor signal transduction histidine kinase TERM 40 35948 - 35983 + G 73 -9.8 -3.68351 | gap 1 TGCGTCCCGATCTGG TGCTGCTCGATATCTGG ATG CCGGATACCGA-CGGCA TTTCGCTGCTCAAGG TERM 41 36162 - 36151 - g 70 -3.6 -4.58395 | TCGACCGTGCAAAAA GCGC TCAA GCAC GACAAGCCGCCGGCG TERM 42 36187 - 36168 - g 74 -11.4 -3.47227 | gap 1, opp_overlap 36176 36177, overlap 36169 GCTCAAGCACGACAA GCCGCCGGC GCG GCCGGCG-C TGACGCTGGAAGCCT TERM 43 36676 - 36690 + G 76 -9.2 -4.07568 | overlap 36680 36689 GTCGAACGCGGCGAA GTGCCG CTG CGGCGC TTTTCAACGGCAGCG TERM 44 36857 - 36812 - g 79 -8.9 -4.24342 | gap 1, overlap 36815 CGCTCGACGAAGAAA TCAGCGCCGACGATGTGGCACG GGT CATGCCACA-CGACGGAGGGGA AAGTCCGGAAGTTCT Daro_0031 35803 - 37068 + | helix-turn-helix, Fis-type TERM 45 37133 - 37162 + F 100 -16.5 -4.3739 | TCAGTGACCCGGCGG TCGGAATGGCGGA TAAT TCCGCCTTTCCGA TTTTCTGGCGGAGTC Daro_0032 37182 - 38249 + | uroporphyrinogen decarboxylase HemE TERM 46 38300 - 38258 - f 71 -9.4 -3.48288 | gap 3, overlap 38262 TAAGTGATAGCATAA GTGAGCGGCAAAGCT-TG-AC TTAT GCACAGAGCTTTGCCGC-CAC CTGAAATAAATTGCT TERM 47 38481 - 38449 - f 70 -10.8 -2.80589 | opp_overlap 38453, overlap 38445 38453 CGCCAAAGAAATCCA CAAAGTTATCCACA GTTTT TGTGGACAACTTTA AAAGCGGCCAAAATT TERM 48 38477 - 38453 - f 81 -9.4 -4.0683 | opp_overlap 38453, overlap 38449 38445 AAAGAAATCCACAAA GTTATCCACA GTTTT TGTGGACAAC TTTAAAAGCGGCCAA Daro_0033 38532 - 40532 + | replication restart DNA helicase PriA TERM 49 40855 - 40808 - gT 70 -6.3 -4.2679 | gap 3, overlap 40810 40811 40839 GAAGTGCGAGGAAAA CATTGCCGCCGGCGACACCTTGCC GCA GG-AAC-TGCCGCCGGCGGCC-CG CGGCCGTGCGATGAC TERM 50 40853 - 40811 - gT 73 -11.3 -2.83504 | gap 2, overlap 40810 40808 40839 GTGCGAGGAAAACAT TGCCGCCGGCGACACCTTGCC GCA GG-AAC-TGCCGCCGGCGGCC CGCGGCCGTGCGATG TERM 51 40861 - 40839 - gT 70 -10.4 -3.14211 | overlap 40811 40810 40808 ACCTTGCCGCAGGAA CTGCCGCCGG CGG CCCGCGGCCG TGCGATGACCTGGAG TERM 52 41369 - 41398 + GT 78 -8.5 -4.27316 | gap 1 CCAGGGCGGGGTTGG GGCGCTCTATACCG GTG CGGTCGAG-GCGCC TTTTGCGTTAAAAAC Daro_0035 42728 - 41511 - | major facilitator transporter Daro_0034 40584 - 41567 + | hypothetical protein TERM 53 41603 - 41580 - GT 93 -12.4 -3.94634 | TAGCAGCGCAAAGAA GGCGCTACGG TAGG CCGTATCGCC AGCCCAGCCATTGGC TERM 54 41786 - 41770 - GT 75 -5.1 -4.70659 | overlap 41772 41776 TTGGACAGCGAAAAA CAGATAC CGA GTATCGG CCAAAACAGATTACC Daro_0036 43429 - 42725 - | MOSC TERM 55 43129 - 43142 + g 74 -6.7 -4.29738 | GGCGCCAGATATCGC CGATG CGGA CATCG TTTTCGTCAATATCG Daro_0037 44341 - 43448 - | N-acetylglucosamine kinase Daro_0038 44991 - 44341 - | hypothetical protein TERM 56 45178 - 45166 - g 73 -9.1 -3.91084 | opp_overlap 45164 45171 CCATTGGCAAGGAAA CCACG GCT CGTGG CGCTTTTACCCAGGC Daro_0039 45075 - 45404 + | hypothetical protein Daro_0040 48993 - 45412 - | PAS/PAC sensor hybrid histidine kinase TERM 57 48596 - 48610 + g 71 -5.6 -4.28994 | overlap 48602 TGACTGTCGCGTAGC GCAGCC TCG GCCTGC TTTTGCTGGGTGATC Daro_0041 49587 - 49018 - | hypothetical protein Daro_0042 49986 - 49624 - | hypothetical protein Daro_0043 50052 - 50768 + | cell wall hydrolase/autolysin Daro_0044 51788 - 50775 - | UDP-N-acetylmuramate dehydrogenase TERM 58 50802 - 50813 + g 70 -4.4 -4.56597 | CGGTTCCGGCGTCAG TTCG ACCG CGAA TTTTTCCCGCACGGC TERM 59 51259 - 51248 - G 73 -4.4 -4.62069 | TGGCCAGGCGAAAAA TCAC CGAG GTGA TGGCGATCCTACCGT TERM 60 51688 - 51710 + g 73 -4.8 -4.72272 | ACCAGCTCGGGCGCG GTCAACGC CTCGGGC GCGGTGAC TTTTTGATAGCGCGC Daro_0045 51862 - 53673 + | ABC transporter related TERM 61 53686 - 53656 - T 100 -19 -3.05596 | overlap 53643 53658 TATGGCTTCAGGGAA GATCGCGACGCACC ATA GGCGCGCCGCGACC AGCCATTACAGCAAG TERM 62 53684 - 53658 - T 100 -18 -3.08679 | overlap 53656 53643 TGGCTTCAGGGAAGA TCGCGACGCACC ATA GGCGCGCCGCGA CCAGCCATTACAGCA metH 57354 - 53692 - | B12-dependent methionine synthase TERM 63 55933 - 55914 - G 70 -12.1 -2.87014 | overlap 55911 AAGCCATGACAATGA CCGCCGC ACCGTA GCGGCGG GCCAGCTTGGCCTGC TERM 64 57452 - 57400 - R 100 -11.4 -4.58395 | opp_overlap 57404, overlap 57404 GGGACGCCGCAAAAA CGAACGGCGC-CGCAAACCGGGGC AAGGAAA ACGCGGGTTTGCGAGCGCCGTT-G ATCATTGCCGAGCCT TERM 65 57449 - 57404 - R 100 -13.3 -3.80855 | gap 1, opp_overlap 57404, overlap 57400 CGCCGCAAAAACGAA CGGCGC-CGCAAACCGGGGC AAGGAAA ACGCGGGTTTGCGAGCGCCG TTGATCATTGCCGAG TERM 66 57404 - 57449 + r 81 -12.6 -3.27298 | gap 1, opp_overlap 57404 57400 CGCCGCAAAAACGAA CGGCGC-CGCAAACCGGGG CAAGGAAAA CGCGGGTTTGCGAGCGCCG TTGATCATTGCCGAG Daro_0047 58049 - 57555 - | hypothetical protein Daro_0048 58133 - 58531 + | rhodanese-like protein Daro_0049 59713 - 58511 - | Bcr/CflA subfamily drug resistance transporter TERM 67 59572 - 59593 + g 73 -4.3 -4.59109 | ACAGCGTCTGCTGGA CTTCAAGCG GGGT CGCATGCAG TTTTTCGCCGATCTC Daro_0050 61202 - 59706 - | Mg chelatase-related protein TERM 68 61214 - 61227 + r 81 -9.5 -4.08216 | CCATGTTGTGCTACT GGCCC GAGC GGGCC TTTTCCAGCGCGTCG Daro_0051 61451 - 61209 - | hypothetical protein Daro_0052 61690 - 62463 + | hypothetical protein Daro_0053 62549 - 62887 + | nitrogen regulatory protein P-II TERM 69 63018 - 62973 - g 100 -9.5 -5.06414 | gap 1, opp_overlap 62973 TGGGCCGAAGAAAAA GCTGCAGCGCCCGAAGCTGTTG CAG CTACCGCCCCGGCCGCAGC-GC CGGCTGCGGCGGCGC Daro_0054 62898 - 64397 + | ammonium transporter TERM 70 64422 - 64441 + T 100 -15 -5.79526 | TAGTCTCTCTCCCTT CGGGCACC TTCG GGTGCCCG TTTTTTTTGCGGTAT Daro_0055 65055 - 64513 - | isochorismatase hydrolase TERM 71 64810 - 64826 + g 75 -2.9 -5.0133 | GATGCCGGGTTCGGC CGCGC AGGAGAA GTGCG TTTTTTCGAAGAATC TERM 72 64988 - 65001 + g 72 -2.3 -4.76041 | overlap 64989 CGCTCGTTGTCGTGA ATGGC CGGC GCCAA TTTTTCCTGAATGTC purU 65924 - 65055 - | formyltetrahydrofolate deformylase Daro_0057 66541 - 65930 - | phosphoserine phosphatase Daro_0058 68936 - 66585 - | diguanylate cyclase/phosphodiesterase TERM 73 68555 - 68567 + g 76 -6.2 -4.58395 | TACCGACCTGAAGCT CGCC GTAGG GGCG TTTTTCGACGCTCAC Daro_0059 69799 - 68936 - | ABC-type phosphate/phosphonate transport system periplasmic component-like protein TERM 74 69084 - 69050 - G 81 -4.4 -5.00616 | gap 1, opp_overlap 69080, overlap 69052 69078 GGTTTTTTCAAAAAA TAGCTGGCCTTCG GGGGTTTTTT CGAAAGCCAGC-A GTGCCGCTTTTACCG TERM 75 69083 - 69052 - G 76 -9.5 -4.13561 | opp_overlap 69080, overlap 69050 69078 TTTTTTCAAAAAATA GCTGGCCTTCG GGGGTTTTTT CGAAAGCCAGC AGTGCCGCTTTTACC Daro_0060 70193 - 70507 + | hypothetical protein Daro_0061 72451 - 70544 - | ABC transporter related TERM 76 73373 - 73353 - g 76 -6.7 -4.56597 | GGTTGCTGCCAAAAA GCTCGAAGC AGA GCGTCGCGC AGCCGAGGACGGGGA Daro_0062 72790 - 73398 + | biopolymer transport protein TolA TERM 77 73415 - 73399 - f 71 -2.2 -4.96028 | GGGGAAAAAAAATAA TCTTGG TCGCG CCATGA TCCGCAAACTCTCCG Daro_0063 73412 - 74626 + | metal-dependent phosphohydrolase Daro_0064 75635 - 74598 - | A/G-specific DNA-adenine glycosylase Daro_0065 75700 - 76200 + | flavin reductase-like, FMN-binding TERM 78 76286 - 76266 - T 72 -10.5 -3.11291 | overlap 76284 CGTATAATGGTAATA CCCTTGCTT CCC AAGCAAGAG CCGACGGTTCGATTC TERM 79 76373 - 76354 - T 81 -9.3 -4.02253 | opp_overlap 76354 TCAACAAGTGAGAAA GCCAACC TCTGCG GGTTGGC TTTTTTGTTTTCCGT TERM 80 76354 - 76373 + T 100 -10 -5.80951 | opp_overlap 76354 TCAACAAGTGAGAAA GCCAACCT CTGC GGGTTGGC TTTTTTGTTTTCCGT TERM 81 78104 - 78092 - T 72 -7.7 -3.86194 | AATGGTCGGTACAAA GGGTT GCC AACCC GCGAGGGGGAGCTAA TERM 82 78639 - 78608 - T 76 -7.4 -4.2558 | opp_overlap 78608 78609, overlap 78609 TATCCTCCACCAAAA CCCAAAGATAAGCA GTGG TGTTTATCTTTGGC TTTTGAGCAATCAAT TERM 83 78608 - 78639 + T 81 -9.6 -4.09864 | opp_overlap 78608 78609, overlap 78609 TATCCTCCACCAAAA CCCAAAGATAAGCA GTGG TGTTTATCTTTGGC TTTTGAGCAATCAAT TERM 84 78638 - 78609 - T 74 -10.9 -3.15027 | opp_overlap 78608 78609, overlap 78608 ATCCTCCACCAAAAC CCAAAGATAAGCA GTGG TGTTTATCTTTGG CTTTTGAGCAATCAA TERM 85 78609 - 78638 + T 83 -13.1 -3.05597 | opp_overlap 78609 78608, overlap 78608 ATCCTCCACCAAAAC CCAAAGATAAGCA GTGG TGTTTATCTTTGG CTTTTGAGCAATCAA TERM 86 79308 - 79297 - T 72 -7.2 -4.2354 | GAAAGGCGAAAAGAA CCCC GGGA GGGG AGTGAAATAGAACCT TERM 87 81918 - 81951 + T 100 -24.1 -2.90615 | opp_overlap 81922, overlap 81922 GCCAGACTCCCCATT CAAACCCCCGTTAGC ATAA GCTAACGGGGGTTTG TCGTTTACCACCAAT TERM 88 81947 - 81922 - T 100 -19.1 -3.6502 | opp_overlap 81918 81922 GACTCCCCATTCAAA CCCCCGTTAGC ATAA GCTAACGGGGG TTTGTCGTTTACCAC TERM 89 81922 - 81947 + T 100 -19.1 -4.13654 | opp_overlap 81922, overlap 81918 GACTCCCCATTCAAA CCCCCGTTAGC ATAA GCTAACGGGGG TTTGTCGTTTACCAC TERM 90 81988 - 81972 - T 85 -8.7 -4.46615 | TACCACCAATCAAAA CCACTCA CCA TGAGCGG ACCAGATTGGCGGAA TERM 91 82043 - 82056 + T 81 -5.9 -4.7657 | opp_overlap 82031, overlap 82055 TTAGGCCTCGTTTGG GCCTG GTAA CGGGC TTTTTGAGCTTTTTG Daro_0066 82770 - 82138 - | peptidase S16, lon N-terminal Daro_0067 83383 - 82772 - | aromatic acid decarboxylase Daro_0068 83913 - 83383 - | heptaprenyl diphosphate synthase component I Daro_0069 84268 - 83894 - | hypothetical protein Daro_0070 85125 - 84268 - | hypothetical protein TERM 92 84868 - 84887 + g 81 -5.6 -4.78149 | opp_overlap 84868 GAAAAGGAACAGGAA GGTCAGGT TGAT GCCCGACC TTTTTAACTTGTCGA Daro_0071 85185 - 86354 + | peptidase M20D, amidohydrolase TERM 93 87063 - 87101 + G 76 -8.9 -4.10429 | gap 1 GTCGATACCCGCTGG CAGCAGTTCGCGCCCGAT CTTG ATCCGGCGA-AGCTGCTG TTTTCCGAGGTGATT Daro_0072 87027 - 87800 + | hypothetical protein Daro_0073 87805 - 88464 + | hypothetical protein TERM 94 88497 - 88476 - f 75 -11.5 -3.04322 | overlap 88466 CTGAAGCCGGCAACA GCTTCCGGG ACGA CCCGGAGGC AAAAGAATCCGGCGG TERM 95 88796 - 88809 + G 70 -3.8 -4.62783 | opp_overlap 88805 GGCTACGGCTTCCTG TCGG AGAACC CCGA TTTTTCGGATGCCTG TERM 96 89344 - 89362 + G 74 -12.4 -3.22298 | TTCGGTGTCCTACCG CTCGGCCG GGA CGGTCGAG TTCGTGATGGATGCG Daro_0074 88541 - 92146 + | allophanate hydrolase subunit 2 Daro_0075 92156 - 93958 + | amidase TERM 97 93971 - 93997 + T 87 -13.7 -2.98823 | gap 1 TGAGAGGGCGCGATG CCGCCGGCTGCC GGAT GGT-GCCGGCGG TGTGTCTAGCCCGGC Daro_0076 94482 - 94027 - | CopG family transcriptional regulator Daro_0077 95871 - 94510 - | L-glutamine synthetase TERM 98 95497 - 95478 - G 71 -5.8 -4.30576 | gap 1, opp_overlap 95478 GGCGGAGCAGGAAAA TCTC-GCAT TCG ATGCCGAGA TTCATGCCGAAGCCC Daro_0078 96669 - 95911 - | creatininase Daro_0079 97597 - 96674 - | ABC transporter related TERM 99 96825 - 96805 - G 72 -12.5 -3.01712 | opp_overlap 96822 TGGTCGCCCGGAACA CCGGGCTGT CGA ACTGCCCGG GAGTGCGCGGGCGGG TERM 100 97147 - 97172 + g 72 -11.1 -3.31248 | gap 1 ACTTGCTCAGGCCGA CCAGGTCGAGCC ACT GGCGCG-CCTGG TTATCCGCGGTGTTG Daro_0080 98564 - 97608 - | binding-protein dependent transport system inner membrane protein Daro_0081 99593 - 98595 - | ABC transport system substrate-binding protein TERM 101 98925 - 98966 + g 74 -12.9 -3.14211 | opp_overlap 98957 98960 GCGGCGGGCCTTGAC GCTGGCCGGGTTGGCGGCG AGCA CGTCGTAAATCAGGCCGGC TTCGTCGGCCGAGGT TERM 102 99928 - 99902 - R 91 -7.9 -5.09225 | opp_overlap 99902 99901 ACTGCACGCAAAAAA GGCTGGCGAAG GTGAA CGTCGCAAGCC CTTGTGCGGGAAATT Daro_0082 100256 - 99954 - | hypothetical protein Daro_0083 101313 - 100399 - | Beta-lactamase-like Daro_0084 101691 - 101482 - | hypothetical protein TERM 103 101574 - 101606 + g 71 -7 -4.21974 | overlap 101556 CAAGGATGTTTATTT TTGCCGTGTCGTCG AGGCG CGACCAGACGGTAA TTTCTTCAATGGTGC Daro_0085 102680 - 101691 - | hypothetical protein Daro_0086 103582 - 102677 - | hydroxymethylglutaryl-CoA lyase TERM 104 103499 - 103517 + g 76 -6.6 -4.49389 | CAGTTCGATCTTGAT GTCGGTCG GGA CGACCAGC TTTTCGTTCTGCAGT Daro_0087 104351 - 103668 - | Short-chain dehydrogenase/reductase SDR Daro_0088 105177 - 104548 - | hypothetical protein TERM 105 104657 - 104667 + g 75 -8.2 -4.19177 | AGCTTGGCCGGTTTC GCCC CGA GGGC TTTCTCTTCGGCGAT TERM 106 104809 - 104821 + g 78 -4.8 -4.78029 | TAGCGCCTTGAAGCC GGCT GCCAA AGCC TTTTCCTTTTGTTCG Daro_0089 107215 - 105215 - | 3-methylcrotonoyl-CoA carboxylase, alpha subunit TERM 107 106903 - 106952 + g 71 -7.7 -4.07568 | gap 1, opp_overlap 106913, overlap 106904 TGGCCGAAGCCGGCG GGCCGATGAAGGCGATGCCGCTGG CAG CCAGCG-CATCGGCAAAGTCGGCA TTTTCGGACAGGAAG TERM 108 106942 - 106913 - G 74 -12.9 -3.14132 | gap 1, opp_overlap 106904 106903 CGGCGGGCCGATGAA GGCGATGCCGCTGG CAG CCAGCG-CATCGGC AAAGTCGGCATTTTC Daro_0090 108004 - 107219 - | enoyl-CoA hydratase Daro_0091 108634 - 108017 - | negative transcriptional regulator Daro_0092 110245 - 108638 - | carboxyl transferase TERM 109 108974 - 108950 - G 84 -5.6 -4.89852 | gap 1, opp_overlap 108966 CCACATCCACAAAAA GCGCGG-CGAG TAGG CGCGGCCGCAC ATGCCGTAGTTGCCG TERM 110 109060 - 109085 + g 74 -6.8 -4.3534 | overlap 109073 CGGCCGTCACCATCT TGGCGCCGTC ACGGGC GATGCCGCCA TTTTCGTACTTGCGG Daro_0093 110901 - 110302 - | hypothetical protein TERM 111 110808 - 110830 + g 71 -7.6 -4.11692 | opp_overlap 110821 CCAGTTCGATGCCGC GCGCGGCC AGCAAGC GGCCGAGC TTTTCCGCCTCGGTA Daro_0094 111529 - 110924 - | DSBA oxidoreductase Daro_0095 112383 - 111562 - | hypothetical protein Daro_0096 113595 - 112459 - | Acyl-CoA dehydrogenase, C-terminal:Acyl-CoA dehydrogenase, central region:Acyl-CoA dehydrogenase, N-terminal TERM 112 113349 - 113375 + g 79 -8.7 -4.16016 | gap 1 GGACCGAGACGATGG TCGAGG-TGGCG CCGT CGCCAGCCGCGA TTTCTTCCAGCGTCA Daro_0097 114506 - 113592 - | hypothetical protein TERM 113 113854 - 113832 - G 74 -4.1 -4.76644 | gap 1, overlap 113834 AATAGCGAGGAAAAA CA-GGCCGGT CCAC ACCCGCCATG ACCAGCTGGCCGGCG Daro_0098 115697 - 114507 - | thiolase Daro_0099 116889 - 115726 - | GCN5-related N-acetyltransferase:carbonic anhydrase TERM 114 116895 - 116927 + r 80 -12 -3.39668 | gap 1, overlap 116886 116897 TTAGCTCCATGTTGC GGCGCTCCTGTCCGG AGCG CCGG-CAGGAGCGTG TTATGCGGTTTCAGC TERM 115 116897 - 116925 + r 100 -16.8 -3.2665 | gap 1, overlap 116895 116886 AGCTCCATGTTGCGG CGCTCCTGTCCGG AGCG CCGG-CAGGAGCG TGTTATGCGGTTTCA Daro_0100 118100 - 116928 - | isovaleryl-CoA dehydrogenase TERM 116 117332 - 117359 + g 74 -12.6 -3.21099 | AGGCGGCCATGATGC CGAGCGGGCCTC CGCA GAGGACCGCACG TTCGTAGTCGAGGCC Daro_0101 118581 - 118135 - | phenylacetic acid degradation-related protein Daro_0102 119042 - 118650 - | regulatory protein, MerR TERM 117 119461 - 119434 - g 78 -2.7 -5.08824 | gap 1, opp_overlap 119440, overlap 119436 GGTTGATGGAAAAAA CCGGTGCGCC GCTGTCGAT GACG-ACCGG GGAGTTCCTGACCGC Daro_0103 119142 - 120167 + | Beta-lactamase-like Daro_0104 120199 - 122034 + | Poly(R)-hydroxyalkanoic acid synthase, class I TERM 118 122060 - 122075 + G 100 -10.4 -5.63517 | opp_overlap 122060 122059 GCTTGAAGGAGAAAG GGAGGC TACG GCCTCC TTTTTTATTTGACGA Daro_0105 122047 - 122499 + | hypothetical protein TERM 119 122978 - 123007 + G 76 -9.3 -4.0492 | gap 1, opp_overlap 122977 TGCATGCCGAGAATT GGTGCTGGATGCCG CGT CGTCGT-CAGCACC TTTATCTGGCAATTG TERM 120 123421 - 123437 + G 70 -5.1 -4.46212 | overlap 123422 TCACCGCTGAGTACG CTGATCG AGT CGATCAA TTTTCTGCTGGCCAA Daro_0106 122641 - 123888 + | stage II sporulation E Daro_0107 124340 - 123885 - | hypothetical protein Daro_0108 125259 - 124357 - | peptidase U32 Daro_0109 126280 - 125273 - | peptidase U32 Daro_0110 126495 - 127385 + | response regulator receiver Daro_0111 128390 - 127389 - | rare lipoprotein A Daro_0112 129499 - 128387 - | rod shape-determining protein RodA Daro_0113 131406 - 129496 - | peptidoglycan glycosyltransferase TERM 121 129682 - 129705 + g 100 -12.4 -5.14563 | opp_overlap 129685 129687 CGGGGCATAGGCGAT GAACAGCGCG TGGT CGCGCAGTTC TTTTTTCATGCCGCC Daro_0114 131946 - 131425 - | rod shape-determining protein MreD Daro_0115 132881 - 131946 - | rod shape-determining protein MreC TERM 122 132805 - 132788 - G 81 -4.8 -4.91109 | GGTCGAGCACAAAAA TCGCCA ATGAAA CGGCGA TGTAGAAAGTCAGAA TERM 123 132821 - 132839 + g 78 -16 -2.52464 | opp_overlap 132814 132821 TGTAGAAAGTCAGAA GGGCCAGC GGT GCTGGCCC TCGCTTGAAGAACGG TERM 124 132839 - 132821 - G 93 -16 -3.50047 | opp_overlap 132821, overlap 132814 TGTAGAAAGTCAGAA GGGCCAGC GGT GCTGGCCC TCGCTTGAAGAACGG Daro_0116 133955 - 132912 - | rod shape-determining protein MreB TERM 125 133623 - 133662 + g 78 -4.3 -4.77157 | overlap 133625 CGGAACGCAGATGAT GATGCGCGGGCTCG-GGCT GAAC AGCTTCGAGT-CGTGCACC TTTTTGATGAATTGC TERM 126 133776 - 133803 + g 76 -6.2 -4.66833 | gap 1, overlap 133780 GCCAAGCATATCCTT GGCT-TCCCGGCC GAC GGCCTGGATGGTC TTTTTGGCATTGGGG Daro_0117 134057 - 134344 + | aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C Daro_0118 134341 - 135798 + | aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit A TERM 127 135874 - 135864 - g 71 -6.8 -4.18161 | overlap 135855 CAGAAACGCCCAAAA CTCC GGA GGAG CCTGCGGCGCAATCG Daro_0119 135800 - 136330 + | hypothetical protein gatB 136344 - 137798 + | aspartyl/glutamyl-tRNA amidotransferase subunit B Daro_0121 138446 - 137799 - | hypothetical protein TERM 128 137985 - 137997 + g 83 -2.6 -5.18726 | overlap 137970 137966 TTCCTTGTCGAGTTC GGCG GGGAG TGCC TTTTTCTTGTAAAAC TERM 129 138093 - 138104 + g 80 -3.6 -5.06414 | overlap 138094 AATGGCGAAGTTCAC GTCG GCCT CGGC TTTTTGTTGCGCCAG pyrE 139080 - 138439 - | orotate phosphoribosyltransferase TERM 130 138664 - 138639 - G 74 -12.5 -3.24825 | gap 1, opp_overlap 138637, overlap 138637 CCAGCGCAATCAATA CGCCTGCCGGGG TGG CGCCGGC-GGCG CGGATCAGTTCGACT Daro_0123 139128 - 139907 + | AP endonuclease Daro_0124 139985 - 140299 + | hypothetical protein Daro_0125 140304 - 140711 + | hypothetical protein TERM 131 140928 - 140944 + G 91 -7.9 -4.8048 | opp_overlap 140919, overlap 140925 CGAAACGTGCCTGGC GCTGGGC TCG GCGCAGC TTTTTCCTGTGGCGC Daro_0126 140708 - 141001 + | hypothetical protein TERM 132 141114 - 141126 + G 71 -9.1 -3.72027 | ATTGGTTTCGACGCG CGGCA TGA TGCCG TTGTTGATGAAGGCT Daro_0127 141004 - 141312 + | hypothetical protein Daro_0128 142564 - 141296 - | major facilitator transporter Daro_0129 143175 - 142564 - | methionine biosynthesis MetW TERM 133 143210 - 143196 - R 75 -11.4 -2.87344 | GATGTTCCGCAGATA GGCGTC GAC GACGCC GTGATAGTGGGCATC metX 144296 - 143172 - | homoserine O-acetyltransferase TERM 134 144344 - 144317 - H 95 -7 -5.45802 | opp_overlap 144317 144334, overlap 144334 TCCTGAAAACAAAAA CCCAGTTGGC TGAAAAAC GCGAACTGGG TGGTTCCCGTTTTAG TERM 135 144531 - 144521 - H 79 -4 -5.13354 | CTCACAAAAAACAAA CTTT TAG AAAG ATCTGGACCAAATGT Daro_0131 144543 - 145163 + | hypothetical protein TERM 136 146268 - 146278 + G 70 -3.2 -4.62302 | GGCTGTGCAGCGGGA TCTG GCA CGGA TTTTTGGCAATCTTG Daro_0132 145144 - 147183 + | TonB-dependent receptor Daro_0133 149283 - 147199 - | diguanylate cyclase/phosphodiesterase TERM 137 148878 - 148890 + g 76 -9.1 -4.11216 | AGAGCTGGTCGGTGT CGCTC ATC GAGCG TTTTACCGGTGCGCC Daro_0134 150185 - 149280 - | hypothetical protein TERM 138 149852 - 149872 + g 83 -2.6 -5.17353 | gap 2 TGATGCGCCCGGAAG TCC-G-CCGA TGC TCGGTCAGGA TTTTTTCGTAAGTCT Daro_0135 150831 - 150238 - | electron transport protein SCO1/SenC Daro_0136 151163 - 150828 - | hypothetical protein TERM 139 151090 - 151111 + g 72 -12.3 -3.02144 | gap 1 TCGACAGCCTCGGTA CCGGCATCGG CAG CCGA-GCCGG TATTGGCAAAAGTAG TERM 140 151204 - 151217 + r 81 -9.5 -4.09685 | opp_overlap 151202 CGATTATAGGCAATG GGCCG GTCA CGGCC TTTTCACAGATCAAA Daro_0137 152012 - 151221 - | periplasmic binding protein TERM 141 151608 - 151625 + g 72 -2.5 -4.84529 | overlap 151606 151610 GCGGGCGAAGCGTTC GGCGGCG ATGG CGCGGGC TTTTTCAATTTCTGC Daro_0138 152919 - 152017 - | periplasmic binding protein TERM 142 152319 - 152360 + g 71 -6.6 -4.17491 | CGCATAGCTTGATCG CATCGCTGATGATCTG-CGG GCCG CCGACCG-TCATCAGCGGGG TTTTCCAGATTTGAT TERM 143 152469 - 152512 + g 100 -14.4 -4.32951 | CATTGGCGGCGGGCT CGGTGCCGGCCAGCTGGCCC AGGC GAACCAGCTGGTCGGCCACG TTTTCGATCTTGTTT Daro_0139 153896 - 152904 - | aminotransferase cobD 154803 - 153889 - | cobalamin biosynthesis protein TERM 144 154356 - 154369 + g 71 -6.7 -4.16943 | opp_overlap 154345 154342 154356, overlap 154347 ACAGCGTGCCGAAGA TGGCA TCGT TGCCA TTTTCCAGTATCGAC Daro_0141 155774 - 154800 - | cob(II)yrinic acid a,c-diamide reductase TERM 145 155629 - 155655 + g 79 -9.4 -4.18197 | overlap 155647 TCTGACTCGGATTCA CCCGGCCG ATGCGCCTTCC CGGCCGGG TTTTCCCTGACCAGT Daro_0142 156848 - 155859 - | hypothetical protein Daro_0143 157555 - 156863 - | hypothetical protein TERM 146 157229 - 157210 - G 70 -10.7 -3.56092 | CGAGCAGCGGGCAAA CGGCCTG GATGCT CAGGCCG GCCAGGAAATGGGCG TERM 147 158464 - 158487 + G 72 -13.8 -2.54298 | overlap 158463 158461 TGACCTGGCTGGAAG CGCGCACCGG CAAG CCGGTGCTCG GTGTTCTGCCCTATC Daro_0144 157821 - 159284 + | cobyric acid synthase TERM 148 159273 - 159301 + T 100 -13.1 -4.24745 | overlap 159264 AAACTGTCGGCGCTG CTGCCGGGCTGAG TGT TTCAGGCCGGCGG TTTCTCTTCGTGGTG Daro_0145 160639 - 159290 - | response regulator receiver:tetratricopeptide TPR_4 TERM 149 159537 - 159566 + g 89 -12.1 -4.14243 | gap 1, opp_overlap 159532 159555 CTGGCCAACAGGGCG GGGCGCAGGCCGGC AAA GCGGGCCT-TGCCC TTTTCCGGTGAGCTG TERM 150 159619 - 159603 - G 76 -9.4 -4.08945 | opp_overlap 159602 159611 159614 AGCAGGGCGGCAAAA CTGGCC TGCTC GGCCAG ATTCATGGCCTGGAT Daro_0146 161247 - 160639 - | ATP-binding region, ATPase-like Daro_0147 161922 - 161356 - | adenosylcobinamide kinase TERM 151 162149 - 162189 + H 100 -22 -4.67038 | overlap 162139 162138 CGAAGCCTGTGGACA GGGTTTCGCGGCAGCGTT GGCCA AACGTTGCCGCGAGGCCC TTTTACTTTTGGAGA cobT 162210 - 163256 + | nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase cobS 163253 - 164023 + | cobalamin synthase Daro_0150 165169 - 164057 - | hypothetical protein Daro_0151 165225 - 165782 + | phosphoglycerate/bisphosphoglycerate mutase TERM 152 166671 - 166698 + G 90 -14.8 -3.63569 | GCCCATGCATATCGC GGCGGCCGTCGG TACG CCGACGGTGGCC TTGTTCGGACCTTCC Daro_0152 165784 - 166887 + | lipopolysaccharide heptosyltransferase III, putative TERM 153 166918 - 166936 + G 100 -12.4 -4.36914 | opp_overlap 166917 166916 GTCAGCGCTACAACC CGTTCGGC GGT GCCGAGCG TTTTGTCGAGCGCGC TERM 154 167315 - 167303 - g 76 -9.1 -4.07568 | GCTGGGGGCGGAAAA GGCGA TGT TCGCC GACCCGGCCCTGCAG Daro_0153 166884 - 168029 + | glycosyl transferase, group 1 TERM 155 168301 - 168312 + G 72 -2.2 -4.77896 | overlap 168309 TCATGGGCATCTTCC TGGT CCGC GCCA TTTTTGGCTTCCTTG Daro_0154 168078 - 169835 + | Lipid A export ATP-binding/permease protein MsbA TERM 156 170750 - 170733 - g 76 -5.5 -4.65895 | opp_overlap 170723 TCCTCGACGGAAAAA CCGGC TATCTGGT GCCGG CGCACGATGGCAAGG Daro_0155 169835 - 170920 + | glycosyl transferase, group 1 Daro_0156 170917 - 171747 + | polysaccharide deacetylase Daro_0157 171747 - 172895 + | glycosyl transferase family protein Daro_0158 172892 - 174088 + | glycosyl transferase, group 1 Daro_0159 174085 - 175230 + | glycosyl transferase family protein Daro_0160 175227 - 176366 + | glycosyl transferase, group 1 Daro_0161 176363 - 177685 + | O-antigen polymerase TERM 157 178223 - 178208 - g 100 -11.8 -5.00616 | opp_overlap 178208 GTGCTCGCGAAAAAA GCCGGC GCTG GCCGGC CGGAAAATATATCGA TERM 158 178259 - 178271 + G 74 -6.9 -4.37734 | TCGAGCGCCTGGCTT CTCCG GAG CGGGG TTTTGCCTTGTTCTG TERM 159 178356 - 178335 - g 79 -12.3 -3.44051 | gap 1, opp_overlap 178344 GGGCGATGACGAGAA GGCGGCACAG GTG CTG-GCCGCC TGCAAGGACAAGGGG Daro_0162 177682 - 178641 + | glycosyl transferase family protein Daro_0163 181367 - 178647 - | DNA polymerase A TERM 160 179597 - 179629 + g 84 -6.2 -4.89477 | gap 1, overlap 179614 CCAGTTCGGAGAGCA CTTCCT-CGTCGGTC GACG GGCCGCCGGAGGGGG TTTTCTTCTTGACCG TERM 161 180493 - 180532 + g 70 -10.7 -3.53012 | gap 2, overlap 180496 GGTGTCTCCGATACT TCG-CGCGCCGGCA-CGGC CGCC GCCGCTTCCGGCCCGTCGA TTTCGCCCAGCCAGG Daro_0164 181373 - 182101 + | hypothetical protein TERM 162 182314 - 182285 - g 75 -8.5 -4.1711 | ACCATTGTCAAGAAA GACACGGAAACCC GCGA GGAATTCCGGGTC AAGGGCAAGCTCTAC Daro_0165 182132 - 182461 + | hypothetical protein TERM 163 183235 - 183222 - g 73 -9.5 -3.92869 | opp_overlap 183224, overlap 183223 TGATCGAGGCAGAAA GGGCC GCCT GGCCC GCCATGCGGCGGGCA TERM 164 183224 - 183256 + G 72 -11.2 -3.33711 | gap 1, opp_overlap 183222 183223, overlap 183235 183245 ATCGAGGCAGAAAGG GCCGCCTGGCCCGCC ATGC GGCGGGC-AGCCGCC TTGCGTTTCTGGCTG TERM 165 183235 - 183261 + G 73 -9.3 -3.93695 | opp_overlap 183223, overlap 183224 183245 AAGGGCCGCCTGGCC CGCCATGCGGC GGGCA GCCGCCTTGCG TTTCTGGCTGCTCCG Daro_0166 182465 - 183391 + | homoserine kinase TERM 166 183715 - 183740 + G 77 -3.9 -4.87803 | GGGGTTCCACCATAA CGCCGGGCA ACTGGTCA TGGTCGGCG TTTTCTTTGCCGCTG TERM 167 183748 - 183758 + G 71 -6.8 -4.23758 | GGTCGGCGTTTTCTT TGCC GCT GGCA TTTTCGGTATCGCCT Daro_0167 183401 - 184147 + | putative transmembrane protein Daro_0168 184150 - 184923 + | putative transmembrane protein Daro_0169 184916 - 185569 + | nicotinate-nucleotide adenylyltransferase Daro_0170 185569 - 185934 + | Iojap-related protein Daro_0171 185931 - 186401 + | hypothetical protein TERM 168 186453 - 186479 + G 76 -5.9 -4.59773 | gap 1, opp_overlap 186454 186456, overlap 186454 186457 GCGAATTGCTGAACC AGATCGGTATCG ATTT CGATACCG-TCG TTTTTCGCGATGGCA TERM 169 186457 - 186476 + G 74 -12.2 -3.24422 | opp_overlap 186456 186454, overlap 186454 186453 ATTGCTGAACCAGAT CGGTATCG ATTT CGATACCG TCGTTTTTCGCGATG Daro_0172 186401 - 187006 + | Maf-like protein Daro_0173 187559 - 186993 - | phosphopantetheinyl transferase-like protein TERM 170 187230 - 187267 + g 76 -6.3 -4.58395 | gap 1, overlap 187221 187231 ATAGTCGCTGGCCAG TGCCGGA-ATTTGTGACT CCC AGTCCCGACTGTCCGGCG TTTTTAGCAGGTCGA TERM 171 187372 - 187348 - G 72 -11.4 -3.40597 | gap 1, opp_overlap 187356, overlap 187346 187349 TGGCTGACTGAAATA CCGACCCGGCC GTCT GGCCGGG-CGA GGCGGATTGCCTGGC Daro_0174 191562 - 187564 - | amino acid adenylation TERM 172 188004 - 188014 + g 85 -6.8 -4.82901 | opp_overlap 187991, overlap 187997 AGGGTGTCCACATCG GCAC CGA GTGC TTTTTGTAGCGCCAG TERM 173 188149 - 188112 - G 84 -9.7 -4.57569 | overlap 188114 TCAGCGCGGCAAAAA CTTCGCGCCAGCGGCCG GCTT CGGCCAGTGGCATGACG TTGAGGACGACGGTG TERM 174 190368 - 190392 + g 70 -9.9 -3.42548 | CATCGATGCGGGCGA GGTCGCCGGTG CGG TACAGGCGGCC TTCATGTTCATTGGT TERM 175 190506 - 190531 + g 76 -8.9 -4.07568 | AGAGTTCCCCCGTTT CGCCTTGCGGC AGTA GGCGCAAGCCG TTTTCGACGGCGGCG Daro_0175 192675 - 191599 - | hypothetical protein Daro_0176 193476 - 192703 - | short chain enoyl-CoA hydratase TERM 176 192927 - 192961 + g 75 -8.4 -4.19238 | opp_overlap 192925 TTTCGTCGAGCAATT GGTCGGCCGGGATG ATGCGGG CGACCAGGCCGGCC TTTTCAGCTTCGGCC TERM 177 193353 - 193390 + g 73 -10.5 -3.69283 | overlap 193354 193356 TCTCGTCGGCTTCGT AGATGTCGATGGCGGCA CCGA TGCCGTCGACGACGTCG TTGTTCAGTGCGTTC TERM 178 193354 - 193389 + g 73 -14 -2.81088 | overlap 193353 193356 CTCGTCGGCTTCGTA GATGTCGATGGCGGCA CCGA TGCCGTCGACGACGTC GTTGTTCAGTGCGTT TERM 179 194521 - 194538 + G 70 -10.5 -3.50853 | overlap 194534 CTGCACAGCGATGTC CGGCCGG GCGA CCGGCTG TTCTACTTCACCACC Daro_0177 193624 - 195579 + | acetoacetyl-CoA synthetase Daro_0178 196712 - 195603 - | acyltransferase 3 Daro_0179 198051 - 196780 - | peptidase U32 TERM 180 197882 - 197863 - G 78 -4.2 -4.77036 | gap 1, opp_overlap 197863 197864, overlap 197864 197865 GCTGACGACGAAAAA CTGCTTGCC GCG GGCATGC-G CTTCGTCGATGCCTT TERM 181 198712 - 198733 + G 76 -10.1 -3.76224 | opp_overlap 198705, overlap 198724 ATCAGGAACTCTCGC TCGGGCAGC GGGT GCTGCGCGA TTTCGTCAATCCGGA Daro_0180 198087 - 199538 + | ribonuclease G TERM 182 199582 - 199567 - g 71 -5.4 -4.3129 | overlap 199568 GATCCATCATGAAAA CCGAAC CCGA GTTCGA CAGTCTTGTTCCGCC Daro_0181 199560 - 200435 + | twin-arginine translocation pathway signal TERM 183 200738 - 200726 - g 74 -3.3 -4.83759 | AAGGAAATGGAAAAA GGCAC GGT ACGCC TGAATCTCGATGGCA Daro_0182 200507 - 200923 + | ProQ activator of osmoprotectant transporter ProP TERM 184 200949 - 200968 + T 100 -13.6 -4.7373 | opp_overlap 200949 GGCTGTAATGAAAAA GGCCAGTC GATT GACTGGCC TTTTTGCTGGAATCC TERM 185 200968 - 200949 - T 100 -13.6 -4.8622 | opp_overlap 200949 GGCTGTAATGAAAAA GGCCAGTC GATT GACTGGCC TTTTTGCTGGAATCC TERM 186 201134 - 201116 - T 100 -8.1 -5.63517 | TCTTGAAACAAAAAA CCTCGAC GCTAG GCCGAGG CTCAGTGTTTTGGTA Daro_0183 202293 - 201469 - | 5,10-methylenetetrahydrofolate reductase Daro_0184 203111 - 202290 - | hemolysin A TERM 187 203020 - 203076 + g 100 -13.5 -5.40072 | opp_overlap 203033, overlap 203021 GCGACGAGCAGGGCA TCCGCCCGCAACACCCCGGCCGGCC GTTCGTG GGCTGGCTGAGGGGTTGGGCGCGGC TTTTTTTGCCGCGCG TERM 188 203021 - 203075 + g 100 -17 -3.83561 | opp_overlap 203033, overlap 203020 CGACGAGCAGGGCAT CCGCCCGCAACACCCCGGCCGGCC GTTCGTG GGCTGGCTGAGGGGTTGGGCGCGG CTTTTTTTGCCGCGC Daro_0185 203468 - 203121 - | membrane protein of unknown function Daro_0186 204890 - 203478 - | S-adenosyl-L-homocysteine hydrolase Daro_0187 206260 - 205055 - | HDIG TERM 189 206282 - 206298 + r 86 -10.8 -4.00042 | opp_overlap 206282 CAATTCTAACAAAAA GGGGGC TGCGC GCCCCC TTGTTTAATGCGAAG TERM 190 206298 - 206282 - R 100 -10.8 -5.10208 | opp_overlap 206282 CAATTCTAACAAAAA GGGGGC TGCGC GCCCCC TTGTTTAATGCGAAG Daro_0188 207488 - 206325 - | S-adenosylmethionine synthetase TERM 191 207780 - 207770 - g 71 -6.8 -4.26076 | overlap 207771 TCACCTGCAGGAAAA CCTG GCA CAGG CCGGGATTGACCCAT Daro_0189 207648 - 208490 + | lipid A biosynthesis lauroyl acyltransferase Daro_0190 208497 - 209372 + | lipid A biosynthesis acyltransferase TERM 192 209732 - 209720 - g 77 -3.3 -5.0133 | opp_overlap 209720 GAGCGCGCCAAAAAA CAGGG CTA CCCTT GTGTGATCCTGCAAG TERM 193 209777 - 209793 + G 70 -4.4 -4.46212 | opp_overlap 209777, overlap 209778 GTGAATGCCATCAAT TCGTAC AAGAA GTACGG TTTTGTGGTCCGCAC Daro_0191 209369 - 209875 + | GCN5-related N-acetyltransferase TERM 194 210230 - 210218 - g 73 -9.1 -3.91897 | opp_overlap 210222 GGCCTGACCGACAAA CGCGA GAT TCGCG TCGAGACGATGCGAG Daro_0192 209936 - 210766 + | diaminopimelate epimerase TERM 195 210938 - 210927 - g 85 -3.6 -5.40072 | GTTGCGCGAAAAAAA CCGG AGCA CCGA AAGCAAGCTGGCCGA Daro_0193 210763 - 211434 + | hypothetical protein Daro_0194 211440 - 212327 + | tyrosine recombinase XerC subunit Daro_0195 212342 - 212617 + | hypothetical protein TERM 196 212637 - 212664 + F 100 -17 -3.93401 | overlap 212649 TCGCCAGTATTCTGA GCCCCGGTTGCC GCAA GGTGACCGGGGC TTCTTGCTTTATAGA Daro_0196 212691 - 213881 + | SAM-dependent methyltransferase TERM 197 214083 - 214129 + G 72 -12.8 -3.06696 | overlap 214090 214120 CACATGATCTTGGCG CAGCGCTGCCATCGCTGGTGGC TTT GCCGCCGGTGGTGGCTGTCCAG TCTGTTCCGGAAGCC Daro_0197 213932 - 214213 + | hypothetical protein Daro_0198 214288 - 215649 + | hypothetical protein TERM 198 216223 - 216211 - g 70 -4.7 -4.56597 | GCCCGTTGGGAAAAA GAGGC GGC GCCGC TCAGAGGACTGCCGG Daro_0199 215659 - 216555 + | periplasmic solute binding protein TERM 199 216695 - 216710 + G 84 -6 -5.00616 | overlap 216696 TTGCTCGCCGCCCTG GCCGGG CGGG CCCGGA TTTTTTCCGGCCGCA TERM 200 217041 - 217068 + G 76 -6.2 -4.64676 | overlap 217054 CGAAAGGCGGAACGG GCATCATCGTGG TCAG TCACGATGCGGC TTTTGTTGAAGCTGC Daro_0200 216557 - 217126 + | ABC transporter related TERM 201 217321 - 217348 + G 79 -15.6 -2.78384 | overlap 217324 CAGCAGGTCTGGCCG GGGCGGGCAAAC GCTT GTTTGCCCGCCG TCTGGTCGGCGGGGC TERM 202 217718 - 217763 + G 74 -11.1 -3.5456 | gap 1, overlap 217709 CATTCCGCCGTGGCT GGCCTTTCGGCGGGCCGGAA ATTGGTA TTCCGGCCTGC-GCTGGGCC TTGGTTCTTGGCGTT Daro_0201 217116 - 217880 + | ABC-type Mn2+/Zn2+ transport systems permease components-like protein Daro_0202 217926 - 219236 + | hypothetical protein Daro_0203 219250 - 219786 + | ATP-dependent protease peptidase subunit TERM 203 220963 - 220951 - g 89 -4.8 -5.27477 | overlap 220952 220958 AGGTGAATGAAAAAA CCGA GAACA TCGG TGCCCGTCGTCTGCA hslU 219783 - 221123 + | ATP-dependent protease ATP-binding subunit TERM 204 221415 - 221442 + G 95 -11.3 -4.51097 | gap 1 AGTCCTTCGATCTGG CCGCCTAC-GCC CCGCT GGCAGTGGGCGG TTTTCTGGTCCTTGC Daro_0205 221228 - 222115 + | auxin efflux carrier Daro_0206 222478 - 222110 - | RNA-binding S4 Daro_0207 223746 - 222484 - | diaminopimelate decarboxylase Daro_0208 223946 - 224263 + | frataxin-like Daro_0209 226579 - 224264 - | penicillin-binding protein 1A Daro_0210 226740 - 227825 + | Type IV pilus assembly protein PilM TERM 205 227879 - 227867 - g 85 -5.5 -5.09173 | opp_overlap 227867 GAAGAGGCGAAAAAA GCTCG GCG CGAAC AGTTTTTTGTATTGG Daro_0211 227822 - 228391 + | fimbrial assembly Daro_0212 228388 - 229071 + | pilus assembly protein, PilO Daro_0213 229068 - 229613 + | pilus assembly protein, PilQ Daro_0214 229610 - 231757 + | type II and III secretion system secretin TERM 206 231780 - 231798 + F 100 -17.4 -5.71712 | opp_overlap 231780 TAATCGATTGATGAA GGGCCGGC GAT GCCGGCCC TTTTTTTGTGTCAAC TERM 207 231798 - 231780 - f 100 -17.4 -3.19389 | opp_overlap 231780 TAATCGATTGATGAA GGGCCGGC GAT GCCGGCCC TTTTTTTGTGTCAAC aroK 231839 - 232357 + | shikimate kinase Daro_0216 232354 - 233448 + | 3-dehydroquinate synthase TERM 208 233554 - 233580 + F 93 -5.9 -5.2189 | gap 1 CTAATTTTCGTACAG GCCGCAGCGTTA AATA TGACGTT-CGGC TTTTTTCATCATTGG Daro_0217 233636 - 238270 + | glutamate synthase (NADH) large subunit Daro_0218 238270 - 239736 + | glutamate synthase (NADH) small subunit TERM 209 239757 - 239784 + F 100 -15.6 -5.16071 | opp_overlap 239757 AGCAGGTCCCGAAAA GCCCCGCCATCT GAAA AGATCGCGGGGC TTTTTATTGCTGGTT TERM 210 239784 - 239757 - f 100 -15.6 -4.08945 | opp_overlap 239757 AGCAGGTCCCGAAAA GCCCCGCCATCT GAAA AGATCGCGGGGC TTTTTATTGCTGGTT Daro_0219 239927 - 240661 + | hypothetical protein Daro_0220 240702 - 242060 + | glucosamine-1-phosphate N-acetyltransferase / UDP-N-acetylglucosamine pyrophosphorylase Daro_0221 242060 - 242383 + | hypothetical protein Daro_0222 242420 - 244471 + | elongation factor G TERM 211 244537 - 244519 - T 100 -14.6 -4.28548 | opp_overlap 244519 ACGTAGGTAGCAAAA GGGGCTGA TTT TCAGCCCC TTTTTTCTTCGGTGA TERM 212 244519 - 244537 + T 100 -14.6 -5.4833 | opp_overlap 244519 ACGTAGGTAGCAAAA GGGGCTGA TTT TCAGCCCC TTTTTTCTTCGGTGA TERM 213 244594 - 244620 + T 70 -7.2 -4.06419 | overlap 244599 AATATTGAATGCCGA CTTGACCCCGTC GAG GACGCGGTTCAG TTCTTTCTCGAAGCG Daro_0223 248217 - 244573 - | PAS TERM 214 245429 - 245451 + g 70 -3.2 -4.58395 | TGGGCCAGCACTTCG CCGATCCGCG CGG CGGTGACCGG TTTTTCAACAATGGC TERM 215 247237 - 247227 - G 70 -4.6 -4.56775 | ACTGGCGGTTAAAAA CCCG GGC CGGA CCGACAAAGGTTTGG TERM 216 247704 - 247677 - G 77 -11.2 -3.65046 | overlap 247680 TGGTCAGGCCAAGAA CCAGCGCCGCTG CGGT CAGCGACGCGAG GATGAACTTGATGGC TERM 217 247701 - 247680 - G 75 -13.7 -2.94045 | overlap 247677 TCAGGCCAAGAACCA GCGCCGCTG CGGT CAGCGACGC GAGGATGAACTTGAT Daro_0224 249271 - 248540 - | response regulator receiver:transcriptional regulatory protein, C-terminal Daro_0225 251289 - 249268 - | PAS TERM 218 251946 - 251934 - g 71 -7.7 -4.07568 | opp_overlap 251934 GTCCCTGGGTGAAAA GGACT ACG AGTCC TTCCTCAACGAAGGC Daro_0226 251452 - 253089 + | acyl-CoA synthetase TERM 219 253113 - 253159 + F 74 -6.2 -4.57073 | overlap 253114 GCGCTTCCCGCCTTG GCGGGAGGCTTCGCCGCACCCC GTC GAGGCGGGGTGATGCCCCCTGG TTTTTCAAAGGAATA TERM 220 253114 - 253158 + F 72 -9.7 -3.33922 | overlap 253113 CGCTTCCCGCCTTGG CGGGAGGCTTCGCCGCACCCC GTC GAGGCGGGGTGATGCCCCCTG GTTTTTCAAAGGAAT Daro_0227 253180 - 254958 + | Acyl-CoA dehydrogenase, C-terminal:Acyl-CoA dehydrogenase, central region TERM 221 256374 - 256349 - g 74 -6.7 -4.33105 | CAACCACGAGGAAAA CCAGCAGACGC ACCT GCGCCTGAAGG ATGAGTCGGTGGCCA Daro_0228 254961 - 256604 + | FAD dependent oxidoreductase:electron transfer flavoprotein-ubiquinone oxidoreductase Daro_0229 256660 - 257295 + | GPR1/FUN34/YaaH family protein TERM 222 257389 - 257406 + F 100 -12.7 -5.80817 | TGTCTCATTCCTTTT GGGAGCC TTCG GGCTCCC TTTTTTTGTCTTGGC Daro_0230 257531 - 258598 + | GGDEF TERM 223 258703 - 258682 - T 73 -9.5 -3.64103 | gap 1, opp_overlap 258679 258682 GAGTCATAGCGCAAA CTGGTT-GCC ATT GGCGAACCAG TCAATTTGTCGTGGC TERM 224 258736 - 258746 + T 72 -8.2 -3.76125 | overlap 258733 CTGATTATTCCGTGC CCGC CCG GCGG TTTCGCTTCAGCTCG clpX 259836 - 258754 - | ATP-dependent protease ATP-binding subunit Daro_0232 259943 - 262159 + | response regulator receiver:ATP-binding region, ATPase-like:histidine kinase A, N-terminal Daro_0233 262276 - 263916 + | phosphoglyceromutase TERM 225 263945 - 263965 + F 83 -13.3 -3.06796 | opp_overlap 263941, overlap 263947 263949 263958 GCGACAACGGATGCC CGGATGCCG GAG CGGCATCTG TTGGCTGGCCTGCCA TERM 226 263947 - 263963 + F 79 -12.3 -3.09327 | opp_overlap 263941, overlap 263945 263949 263958 GACAACGGATGCCCG GATGCCG GAG CGGCATC TGTTGGCTGGCCTGC TERM 227 264318 - 264331 + G 88 -3.1 -5.53288 | gap 1 GATCGGTGCCTTGTT GC-TGG GAA CCATGC TTTTTTTCAGTTCAC Daro_0234 263992 - 264882 + | ribonuclease BN Daro_0235 265242 - 264883 - | hypothetical protein TERM 228 265077 - 265067 - G 77 -8.2 -4.38712 | GGCAGGGTGACAAAA GCCG ATT CGGC GGCGACCAGCACGAA TERM 229 265297 - 265279 - R 78 -12.4 -2.8474 | overlap 265276 TGTCATTCAGAACCA GGTCAGCC AGC GGCCGACC AATAGCATCAGGACG Daro_0236 265692 - 265270 - | hypothetical protein TERM 230 265866 - 265843 - R 93 -10.2 -4.5852 | gap 1, overlap 265844 GAATTGAAACCAAAA TGGCCGCC-CG AAA CGAGGCGGCCC AGTACCCGGATGGCA TERM 231 265865 - 265844 - R 95 -13.7 -3.34028 | gap 1, overlap 265843 AATTGAAACCAAAAT GGCCGCC-CG AAA CGAGGCGGCC CAGTACCCGGATGGC Daro_0237 267141 - 265903 - | glycerophosphoryl diester phosphodiesterase Daro_0238 267331 - 268089 + | integral membrane protein TerC Daro_0239 268647 - 268096 - | hypothetical protein Daro_0240 271670 - 268653 - | Hpt sensor hybrid histidine kinase Daro_0241 272505 - 271675 - | periplasmic binding protein-related protein Daro_0242 273663 - 272596 - | AraC family transcriptional regulator TERM 232 273648 - 273662 + g 81 -4.2 -4.90917 | overlap 273650 GTGACGAATTTCCGA TCGTGC GGT GCACCA TTTTTGATTGGATTT TERM 233 276890 - 276868 - g 81 -6.2 -4.731 | AAGCGATGAAGAAAA GCAGTCGC AGATCAA GCGCCTGC GCGACTTCCAGGCCC Daro_0243 273719 - 277069 + | methylmalonyl-CoA mutase, N-terminal:methylmalonyl-CoA mutase, C-terminal TERM 234 277153 - 277125 - f 75 -6.6 -4.30576 | opp_overlap 277128, overlap 277126 277128 GGCGGAGGAGCAAAA CGACGGCGAGGC TAAGT ACCTCGCCGTTT TATTTTCCATTGTCG TERM 235 277152 - 277126 - f 70 -10.1 -3.18024 | opp_overlap 277128, overlap 277125 277128 GCGGAGGAGCAAAAC GACGGCGAGGC TAAGT ACCTCGCCGTT TTATTTTCCATTGTC TERM 236 277150 - 277128 - f 81 -12.7 -3.14962 | opp_overlap 277128, overlap 277126 277125 GGAGGAGCAAAACGA CGGCGAGGC TAAGT ACCTCGCCG TTTTATTTTCCATTG TERM 237 277128 - 277150 + F 100 -12 -5.13343 | opp_overlap 277128 277126 277125 GGAGGAGCAAAACGA CGGCGAGG CTAAGTA CCTCGCCG TTTTATTTTCCATTG TERM 238 277362 - 277374 + G 91 -4.7 -5.52384 | GCTGGTTCTGACCCT GGCGC TCG GCGGC TTTTTTTCATGGCAA TERM 239 277993 - 277968 - g 77 -8.1 -4.34402 | opp_overlap 277968 GGCGCTACAGCAAAA GGAGGCGCTGG CCCG CCTGCGCGCCC TGCATTTCGGACAGA TERM 240 278227 - 278210 - g 70 -3.3 -4.63486 | AGCTGGTCAATAAAA CGGCGCT GGTC AACGTCG TCAAGCCGTGGAACT TERM 241 279820 - 279838 + G 72 -13.1 -3.09131 | overlap 279811 279836 GGGATCGGCATGGAT GCCGGGC AGCAG GCCCGGC TGTTCCAGTCCTTTT Daro_0244 277255 - 280455 + | PAS/PAC sensor hybrid histidine kinase TERM 242 280507 - 280479 - T 77 -7.3 -4.56597 | opp_overlap 280482, overlap 280480 280482 TGTTTCTGTCAAAAA CGACGGCGAGGCC ATG AACCTCGCCGTTT TCATTGGGGCTTCCG TERM 243 280506 - 280480 - T 76 -10.8 -3.33744 | opp_overlap 280482, overlap 280479 280482 GTTTCTGTCAAAAAC GACGGCGAGGCC ATG AACCTCGCCGTT TTCATTGGGGCTTCC TERM 244 280504 - 280482 - T 85 -13.4 -3.23708 | opp_overlap 280482, overlap 280480 280479 TTCTGTCAAAAACGA CGGCGAGGCC ATG AACCTCGCCG TTTTCATTGGGGCTT TERM 245 280482 - 280504 + T 95 -12 -4.41895 | opp_overlap 280482 280480 280479 TTCTGTCAAAAACGA CGGCGAGG CCATGAA CCTCGCCG TTTTCATTGGGGCTT Daro_0245 287079 - 280552 - | Outer membrane autotransporter barrel TERM 246 282492 - 282517 + g 76 -8.9 -4.11692 | CAGCCTCGCCGCCAG CGCTCTGGGCA TAGA TGCCGTGAGCG TTTTCGCCGTCAGTC TERM 247 284580 - 284547 - G 79 -9.7 -4.14392 | gap 2, overlap 284548 ACAGCGAGAGAGAAA GGCCTTTGCCGGCCG AGGCAG CGGCCG-CAAAG-CC ACCATTGCCGCCGCG TERM 248 285025 - 284991 - G 100 -20 -3.28712 | CCGTGTTGCCGACAA TGACGGCGCCGCCATC GCT GGTGGTGGCGCCGTCA CCTCCGATGGCCACA TERM 249 286427 - 286472 + g 80 -11 -3.73775 | opp_overlap 286439 286440 TACGTGTTGACGACA GCATCGGAATAACCGCCCGC CCGGCT GCGGGCGCTGATACCGGGGC TTTGATCGCCATCCG TERM 250 288055 - 288022 - g 74 -12.3 -3.13403 | opp_overlap 288023 288024, overlap 288020 GCTGGGGCAGGAATA CATGGTGCGGGCCGG CTAT CCGGCCAGCGGCATG GTCGGCCTGCAGCAA TERM 251 288024 - 288069 + G 76 -14.8 -2.53164 | gap 1, opp_overlap 288022 288020, overlap 288023 TGGGGCAGGAATACA TGGTGCGGGCCGGCTAT-CCG GCCAG CGGCATGGTCGGCCTGCAGCA ATTGCTGGTCGATCA Daro_0246 287393 - 288721 + | peptidase M48, Ste24p TERM 252 288740 - 288763 + T 78 -12.4 -2.87931 | CCTGCCCGGTGAATG CCACTACCGC GTGG GCGGCAGTGG TGTCTGGCAAGTCAG Daro_0247 289611 - 288781 - | hypothetical protein Daro_0248 290491 - 289817 - | cyclic nucleotide-binding Daro_0249 290673 - 292640 + | AMP-dependent synthetase and ligase Daro_0250 292643 - 293425 + | ABC transporter related TERM 253 293730 - 293771 + G 70 -5.1 -4.56597 | gap 1, opp_overlap 293756, overlap 293731 CGCTGTTCATGGCGA CCATCGGCCTGGCGTTCTTC ATC GAAG-GTGTCGCGCCGATGA TTTTTGGCAGCGAGC Daro_0251 293438 - 294352 + | inner-membrane translocator TERM 254 294573 - 294593 + G 79 -12.5 -3.4285 | opp_overlap 294571, overlap 294585 TTGGGCCTGAACATC CTGACCGGC TAC GCCGGCCAG TTGTCGCTTGGCTCG Daro_0252 294369 - 295445 + | inner-membrane translocator TERM 255 295745 - 295729 - g 76 -10.1 -3.73873 | overlap 295732 CGAAACGGAATACAA CAACGCC AAG GGCGTCG AGTGCTATGAGCGCC Daro_0253 295487 - 296809 + | putative branched-chain amino acid transport system substrate-binding protein TERM 256 296825 - 296848 + F 95 -12.4 -4.0641 | opp_overlap 296807 GACGGCAGGAGGAGG GAGTGGGGGC ATGA GCCCTCGCTC TTTCTCTCCGTCCCA TERM 257 297047 - 297002 - g 72 -11.1 -3.27525 | gap 1, opp_overlap 296978, overlap 296997 CGTGCCGAAAGGCAA GATCGTCGCCTTGCTCGGTGCC AAC GGTGCCG-GCAAATCGACGACC CTGAAGGCGATTTCC Daro_0254 296835 - 297710 + | ABC transporter related TERM 258 297723 - 297739 + F 76 -10.8 -3.29461 | overlap 297733 TAACGGGTTGCAGTG CGCCGC GCATG GCGGCG TTGTCGGCCGGCTTG TERM 259 298119 - 298098 - g 93 -7.9 -4.87786 | overlap 298101 CGAATTGCAGAAAAA GCATCCGCC GTTT GGCGGACTC AACGCCTTGGCGCGT Daro_0255 297883 - 299112 + | putative phenylacetate-CoA ligase TERM 260 299095 - 299122 + F 84 -10.6 -3.75863 | opp_overlap 299095 299097 299099 GGGAAGGTGATCGAA GATAGCCGGGTC TACT GATCCGGATATC TTTCATGCGAATTTT Daro_0256 299127 - 299627 + | hypothetical protein Daro_0257 300824 - 299646 - | L-carnitine dehydratase/bile acid-inducible protein F TERM 261 300409 - 300433 + g 79 -12.7 -3.53012 | TAGTTGGCATCGTGA CCGGCACGCGG AGC CAGCGGGCCGG TTTGGCCCCAGCCGG Daro_0258 301018 - 301596 + | hypothetical protein Daro_0259 302599 - 301616 - | forkhead-associated Daro_0260 303692 - 302832 - | SPFH domain-containing protein/band 7 family protein TERM 262 302889 - 302906 + g 73 -4.9 -4.58395 | gap 1, opp_overlap 302853 302852, overlap 302888 GTCAGCCGGCAGGAC GACAA-GC TTG GCGTTGTC TTTTTCGCCCATGCG Daro_0261 304145 - 303705 - | hypothetical protein Daro_0262 304252 - 305151 + | auxin efflux carrier TERM 263 305171 - 305182 + T 75 -7.2 -4.31065 | overlap 305167 TTCTTGGTGGCGGCG GGCC GCCT GGCC TTTGGTTTTGTCTCT Daro_0263 305616 - 305152 - | hypothetical protein TERM 264 305390 - 305417 + g 74 -12 -3.53811 | ATCTTGCCCATGGCC TGCACCGCACCG ACTG TGGTGCGCTGCA TTTCCAGGCCCTGAA TERM 265 306158 - 306145 - g 70 -5.2 -4.56597 | GCCGCCGCCGAAAAA CGGG GTGCGT CCCG ACGAGATTGGCTTGA Daro_0264 305705 - 306370 + | two component LuxR family transcriptional regulator Daro_0265 308433 - 306340 - | sensor histidine kinase TERM 266 307799 - 307811 + g 70 -4.8 -4.56607 | GAGGGGCGGCAGGAG GCGA TGATT TCGC TTTTCTGGTTGATGA Daro_0266 309188 - 308439 - | hypothetical protein TERM 267 308717 - 308695 - G 89 -6.9 -5.03314 | overlap 308697 CCCAGGCTGAAAAAA CGGCCGACC AGCCA GGTCAGCGG GGCGTTTTCGTAGCC Daro_0267 312650 - 309198 - | indolepyruvate ferredoxin oxidoreductase TERM 268 309375 - 309389 + g 76 -5.6 -4.72272 | GTAGTCGGCTAACAG GCTGCG CTC TGCGGC TTTTTCGTGGCCAAA TERM 269 309480 - 309490 + g 75 -2.4 -4.93877 | overlap 309466 TGGCATCAGCCAGGG GCCG AAG CGGA TTTTCTTTGGTCGGC TERM 270 310528 - 310544 + g 85 -5.7 -5.09426 | opp_overlap 310500 GCATCCACCGAATCC GGCTGGG CGG CCTTGCC TTTTTTCAACTTGCC TERM 271 311614 - 311629 + g 71 -9 -3.72695 | opp_overlap 311624 311625 AGCAGCTGGCGTTTT TCCTCG ACAA CGAGGA TTTCCTCCAGCCCCT TERM 272 312180 - 312224 + g 77 -11.3 -3.64703 | overlap 312181 CGGCAGGGTCGAGGA CTTGGCGGCGTGGTCGTCGCC GGC GATGACCAGCACGCCGCCGAA TTTCGATGAGCCGGC TERM 273 312181 - 312223 + g 77 -14.8 -2.78679 | overlap 312180 GGCAGGGTCGAGGAC TTGGCGGCGTGGTCGTCGCC GGC GATGACCAGCACGCCGCCGA ATTTCGATGAGCCGG Daro_0268 314161 - 312773 - | FAD linked oxidase, C-terminal:FAD linked oxidase, N-terminal TERM 274 313652 - 313670 + g 76 -8.8 -4.10161 | GCCATCGGCCAGCAC CGTGGTGG TAG CCAGCACG TTTTCACGCATCGTG TERM 275 313719 - 313737 + g 73 -10.2 -3.67597 | overlap 313720 GTGCCGGAAGCCCGG GTGGCGGC CAT GCCGCCAA TTGTTGCGTCGGCGC TERM 276 313720 - 313736 + g 73 -13.7 -2.80344 | overlap 313719 TGCCGGAAGCCCGGG TGGCGGC CAT GCCGCCA ATTGTTGCGTCGGCG Daro_0269 315465 - 314158 - | hypothetical protein Daro_0270 315585 - 316967 + | extracellular ligand-binding receptor TERM 277 316986 - 317013 + F 100 -20 -3.41878 | opp_overlap 316991, overlap 316991 GATGTTCCGCTGACT GGAAACGGCACC GCAA GGTGCCGTTTCC TTATGCCTTAAAAGA TERM 278 317008 - 316991 - f 88 -12.7 -3.59979 | opp_overlap 316986 316991 TCCGCTGACTGGAAA CGGCACC GCAA GGTGCCG TTTCCTTATGCCTTA TERM 279 316991 - 317008 + F 95 -12.7 -4.01939 | opp_overlap 316991, overlap 316986 TCCGCTGACTGGAAA CGGCACC GCAA GGTGCCG TTTCCTTATGCCTTA Daro_0271 317003 - 317962 + | inner-membrane translocator Daro_0272 317959 - 319020 + | inner-membrane translocator Daro_0273 319017 - 319778 + | ABC transporter related TERM 280 320083 - 320058 - g 71 -8.3 -4.07885 | gap 1 GACGGTGCTGGAAAA CCTGCACAT-GG GGG CCTATGTGCGGG ATGCCGACGCCGATG Daro_0274 319771 - 320475 + | ABC transporter related TERM 281 321144 - 321169 + G 74 -6 -4.56597 | overlap 321145 CCGCGCCCTGGCCGG CGCCAGCGGC GACAAG GCCGCTCGCA TTTTTACCACCAGCC Daro_0275 320488 - 321321 + | septum site-determining protein MinC TERM 282 322066 - 322054 - g 70 -3.3 -4.59342 | opp_overlap 322065, overlap 322055 TTCACCAGAAAGAAA CCGAC GCC GCCGA GGCCTACCACGATGT Daro_0276 321357 - 322172 + | septum site-determining protein MinD Daro_0277 322174 - 322431 + | cell division topological specificity factor MinE TERM 283 322512 - 322544 + F 75 -5.6 -4.62471 | gap 1, overlap 322516 TGCATCAAACGTTTT GCCA-TGCCGGCA GGTCACAA TGCCGGCATTGTC TTTTTCAGGATTCCG TERM 284 322516 - 322539 + F 81 -9.6 -4.07746 | overlap 322512 TCAAACGTTTTGCCA TGCCGGCA GGTCACAA TGCCGGCA TTGTCTTTTTCAGGA Daro_0278 322565 - 323197 + | hypothetical protein TERM 285 323235 - 323212 - T 100 -18.2 -3.53761 | opp_overlap 323202, overlap 323200 GAACTTGGCTGGAAA GCGCCAGCCA GGCC TGGCTGGCGC AGCCAATAATCAGTT Daro_0279 324255 - 323245 - | CDP-6-deoxy-delta-3,4-glucoseen reductase TERM 286 323423 - 323411 - G 71 -6.2 -4.42386 | GCCTGATGCACAAAA CCGG AGCGA CCGG CCCATTCGCCGGAGG TERM 287 323682 - 323669 - G 70 -3.7 -4.67353 | TCACGCAGGTAAAAA GTCCC GTGC GGGCC ATTGAAGCGCAGGAT TERM 288 325117 - 325105 - g 74 -3.3 -4.72772 | overlap 325106 325107 AAAAAAGAATTAAAA CTGCG TCT CGCAT ACCCGACCGTTGATG Daro_0280 324289 - 325179 + | NAD-dependent epimerase/dehydratase:3-beta hydroxysteroid dehydrogenase/isomerase Daro_0281 325167 - 325583 + | hypothetical protein TERM 289 325671 - 325689 + G 72 -2.2 -4.85599 | opp_overlap 325667, overlap 325671 325674 CGCAGAGGAACTGCG GGCCACGC ATG GCGGTGTC TTTTTCTCCGGTGAC Daro_0282 325585 - 326727 + | putative RNA methylase:THUMP TERM 290 328057 - 328040 - g 75 -8.4 -4.1964 | overlap 328052 GGCAAGACGGCAAAA CAGCGC ACCGAA GCGCTG ATCGGCATCGCTCAC Daro_0283 326831 - 328126 + | Acetyl-CoA hydrolase/transferase TERM 291 328349 - 328326 - g 72 -11 -3.34344 | CCATTGCCGAAGTAA CCATCAGGGC GCAC GCCATGATGG AGGAGTGTCTGGACC Daro_0284 328136 - 328459 + | hypothetical protein TERM 292 328691 - 328715 + G 86 -13.5 -3.41745 | overlap 328684 TTGGTGGACCGGTCT GGGGGCCGGTG TGG TACCCGCCCCC TTACTATTATCCGCC Daro_0285 328573 - 328908 + | hypothetical protein Daro_0286 328915 - 329469 + | proline-rich region TERM 293 329511 - 329488 - T 100 -18.2 -5.0916 | opp_overlap 329488 CGGCTAATACAAAAA GGGCAGCACC TTTC GGTGCTGCCC TTTGCTTTTGGGGGT TERM 294 329488 - 329511 + T 100 -18.2 -4.20136 | opp_overlap 329488 CGGCTAATACAAAAA GGGCAGCACC TTTC GGTGCTGCCC TTTGCTTTTGGGGGT Daro_0287 330481 - 329537 - | lipoyl synthase Daro_0288 331091 - 330474 - | lipoate-protein ligase B Daro_0289 331361 - 331092 - | hypothetical protein Daro_0290 332238 - 331363 - | branched chain amino acid: 2-keto-4-methylthiobutyrate aminotransferase Daro_0291 333418 - 332243 - | penicillin-binding protein 6 Daro_0292 334326 - 333418 - | LysR family transcriptional regulator Daro_0293 334429 - 335307 + | heat shock protein HtpX TERM 295 336146 - 336132 - g 76 -5.6 -4.59773 | overlap 336133 CTTGATCTGGAAAAA CGGCAA CGC TGGCCG AGCATCGCCTTGAAA Daro_0294 335325 - 336587 + | Outer membrane efflux protein TERM 296 336675 - 336649 - g 74 -6.4 -4.38092 | overlap 336646 336650 CAACAAGGAAAACAA CCCGGCAGCTGC CAA GCAGGCGCAGGA TCCGAGCATCGTTCA TERM 297 337359 - 337370 + G 72 -2.2 -4.82901 | opp_overlap 337355 337354 GCAATGAGAAGCTGG TCGG CAAA CTGA TTTTTGTCGGCCAGA Daro_0295 336584 - 337723 + | secretion protein HlyD TERM 298 338835 - 338862 + G 78 -13.4 -3.19425 | overlap 338839 CCGTTCCTCGCTGAT CGTCGTCGGCAC GCTG GTGCTGACGCCG TTGCTGACCTTCATT Daro_0296 337720 - 340830 + | heavy metal efflux pump CzcA TERM 299 340858 - 340837 - g 70 -5.1 -4.53349 | overlap 340841 GAAGCATGAAAGAAA TCAAGGCGA TCAT TCGCCCCAA CAAACTGCCGCTTTT Daro_0297 340827 - 341165 + | nitrogen regulatory protein P-II Daro_0298 341284 - 342204 + | PAS Daro_0299 342953 - 342201 - | hypothetical protein TERM 300 342509 - 342470 - G 72 -2.1 -4.82901 | gap 2, opp_overlap 342483 342484, overlap 342472 342482 342483 CCTCGTCGACAAAAA GACGGTCGAGAACGGCCGA GCGT TCGGC-GTTGTCGGGCG-C TGAGGCTGCCGCTTC Daro_0300 343437 - 342961 - | lactoylglutathione lyase TERM 301 343351 - 343371 + g 72 -2.6 -4.8622 | gap 2 TTCCAGACCGAATTT CT-CG-ACCC ACA GGGTGCGCAG TTTTTCCTTGGACGG Daro_0301 344269 - 343478 - | prolipoprotein diacylglyceryl transferase TERM 302 345433 - 345423 - g 80 -3.2 -5.08824 | CGTCTATGCAAAAAA CCTC GGT GAAG CAATCGACCGTTGGG TERM 303 345953 - 345971 + G 77 -14.6 -2.78384 | CCTCGCCCGAGGCGG CCGATGGC GGC GCCATCGG TCTGGTGGAGGAGGG Daro_0302 344356 - 346212 + | dihydroxy-acid dehydratase TERM 304 346722 - 346779 + G 82 -9.7 -4.34402 | overlap 346715 GCGGGCACTCGCCTG GGGCGCTGGTTGCATGATCCTGAAGCC ATTC GCCTGCAGAATCGTGCGTTCGGCGGCC TTTTCGTGTCGGCCG Daro_0303 346209 - 346826 + | lysine exporter protein LysE/YggA Daro_0304 346978 - 347283 + | cytochrome c, class I TERM 305 347299 - 347329 + F 100 -11.9 -4.74706 | opp_overlap 347306, overlap 347306 TTCAAGCTTCGAAAG CGCAAAAGCCGGC TATAT GCCGGCTTTTCTG TTTTTAGGTGTTGAC TERM 306 347306 - 347322 + F 100 -10.8 -4.98672 | opp_overlap 347306, overlap 347299 TTCGAAAGCGCAAAA GCCGGC TATAT GCCGGC TTTTCTGTTTTTAGG TERM 307 347322 - 347306 - f 91 -10.8 -4.24002 | opp_overlap 347306 347299 TTCGAAAGCGCAAAA GCCGGC TATAT GCCGGC TTTTCTGTTTTTAGG TERM 308 347767 - 347754 - g 74 -3.1 -4.86621 | overlap 347756 ATGGCTAAGGAAAAA TTCGC GCGT ACGAA ACCGCACGTAAACGT tuf 347739 - 348929 + | elongation factor Tu TERM 309 348948 - 348979 + F 100 -16 -3.51934 | opp_overlap 348952 348953, overlap 348953 ATAGTCTTTCAGTAA TTAAGGCGCTTCGG GAAA CCGAAGCGCTTTGA TGTTTCTGCAGCAGG TERM 310 348975 - 348952 - f 83 -12.4 -3.39895 | opp_overlap 348948 348953, overlap 348953 TCTTTCAGTAATTAA GGCGCTTCGG GAAA CCGAAGCGCT TTGATGTTTCTGCAG TERM 311 348953 - 348974 + F 100 -15.9 -4.04579 | opp_overlap 348952 348953, overlap 348948 CTTTCAGTAATTAAG GCGCTTCGG GAAA CCGAAGCGC TTTGATGTTTCTGCA TERM 312 348974 - 348953 - f 95 -15.9 -2.63723 | opp_overlap 348953 348948, overlap 348952 CTTTCAGTAATTAAG GCGCTTCGG GAAA CCGAAGCGC TTTGATGTTTCTGCA secE 349092 - 349445 + | preprotein translocase subunit SecE TERM 313 349523 - 349491 - g 93 -7.6 -5.00616 | opp_overlap 349491 349490, overlap 349493 CCGGCTTCGAAAAAA GTGTGATGCGCGCC ATTCA GGAGCGCATTACCC GTTTGGGCATGGAAG TERM 314 349911 - 349894 - g 71 -5.5 -4.3534 | CGTCAACTACGAAAA GAATCGC CTGC GCGTTTC GGTGACCATCTTCGG nusG 349442 - 349975 + | transcription antitermination protein NusG rplK 350083 - 350514 + | 50S ribosomal protein L11 TERM 315 350551 - 350537 - g 72 -2.8 -4.74801 | opp_overlap 350546, overlap 350545 350546 TAAGCTCACGAAAAA GCAAAA AGC CCTTGC CAGCAAGGTTGTCGC TERM 316 350723 - 350745 + G 71 -7.6 -4.07568 | overlap 350709 TCTGCCGGCGGGTAC CGGCAAGTCG GTT CGCGTTGCCG TTTTCGCCCAGGGCG TERM 317 351165 - 351151 - g 73 -4.2 -4.66318 | overlap 351153 AGTACCTGAAGAAAA TTGCAG TTT CTGCCA CGATGGGCCCCGGCG Daro_0309 350517 - 351212 + | 50S ribosomal protein L1P TERM 318 351390 - 351409 + F 80 -11.4 -3.281 | overlap 351388 AGGTCGCCGTAGGTG CGGCGGGA ATTT TCCCGTCG TGTTATGACTTGAAA rplJ 351438 - 351935 + | 50S ribosomal protein L10 rplL 351974 - 352345 + | 50S ribosomal protein L7/L12 TERM 319 352362 - 352385 + F 100 -19.6 -4.64846 | overlap 352384 CGACTTTTGGTGTGT GGGCTGGCGG TTTT CCGCCAGCCC TTTTGTGCTTTGTAC TERM 320 352447 - 352505 + F 90 -15 -2.88446 | gap 2, opp_overlap 352437, overlap 352465 352466 GAATATCGCCAACTG GCAAACGCAAACAAGGCTTTCCTTTTCC CCGGC GGGGAAGG-GAGT-TTGTTTGCGTTTGC CTGTTTTCTCAGGTT TERM 321 352465 - 352490 + F 85 -8.3 -4.53439 | overlap 352447 352466 AACGCAAACAAGGCT TTCCTTTTCCC CGGC GGGGAAGGGAG TTTGTTTGCGTTTGC TERM 322 352650 - 352662 + G 79 -7.7 -4.56597 | GGCCACTCAACTGCA GTCCT TCA AGGAC TTTTTGCAAGACGAA rpoB 352552 - 356835 + | DNA-directed RNA polymerase subunit beta TERM 323 358747 - 358771 + G 76 -6.3 -4.59342 | opp_overlap 358743, overlap 358749 CTGATGCAGAACGGC TACGCGCTCGC AAC GCGGGCCGGTA TTTCTTTCTGCTCGG Daro_0313 356857 - 361068 + | DNA-directed RNA polymerase subunit beta' TERM 324 361066 - 361121 + F 83 -9.8 -4.12037 | gap 1, opp_overlap 361081, overlap 361054 361081 361114 GCCGATCAGGGCCTG TGATCTGTCT-AGCAACCCCCGTGTCA CGT TGACACGGGGGTTGATCAGCCATAGAA TTTATGGTCTTTGTC TERM 325 361105 - 361081 - f 100 -20.1 -3.14564 | opp_overlap 361066 361081 TGATCTGTCTAGCAA CCCCCGTGTCA CGT TGACACGGGGG TTGATCAGCCATAGA TERM 326 361081 - 361105 + F 100 -20.1 -3.14931 | opp_overlap 361081, overlap 361066 TGATCTGTCTAGCAA CCCCCGTGTCA CGT TGACACGGGGG TTGATCAGCCATAGA rpsL 361226 - 361603 + | 30S ribosomal protein S12 TERM 327 361653 - 361680 + F 83 -10.4 -4.14739 | TGGGCGGCCGAGAGG GCCGGGTGGGTG AAAA CCCCTTCCCGGC TTTTCAACTGAATCG Daro_0315 361714 - 362184 + | 30S ribosomal protein S7 Daro_0316 362203 - 364296 + | translation elongation factor 2 (EF-2/EF-G) TERM 328 364340 - 364327 - g 74 -3.1 -4.86621 | overlap 364329 ATGGCTAAGGAAAAA TTCGC GCGT ACGAA ACCGCACGTAAACGT tuf 364312 - 365502 + | elongation factor Tu TERM 329 365546 - 365519 - f 74 -6.2 -4.56597 | overlap 365520 365521 CGTTCTTTTTAAAAA TCCGGGGTGAAG AAGA CTTCACCCCATC GCTCTTTGGAAACCA TERM 330 365545 - 365520 - f 72 -9.7 -3.33744 | overlap 365519 365521 GTTCTTTTTAAAAAT CCGGGGTGAAG AAGA CTTCACCCCAT CGCTCTTTGGAAACC TERM 331 365544 - 365521 - f 81 -13.2 -2.60032 | overlap 365520 365519 TTCTTTTTAAAAATC CGGGGTGAAG AAGA CTTCACCCCA TCGCTCTTTGGAAAC rpsJ 365564 - 365875 + | 30S ribosomal protein S10 TERM 332 365908 - 365931 + F 84 -8 -4.68601 | opp_overlap 365896, overlap 365909 AATCCGCGCCTTTCG GGGGTGGCCG GCGA CGGCTGCCCA TTTGTTGTTTTACAT TERM 333 365909 - 365930 + F 80 -11.5 -3.39534 | opp_overlap 365896, overlap 365908 ATCCGCGCCTTTCGG GGGTGGCCG GCGA CGGCTGCCC ATTTGTTGTTTTACA rplC 365985 - 366623 + | 50S ribosomal protein L3 TERM 334 366932 - 366920 - g 70 -3.4 -4.63218 | CTCTCCTGAAGAAAA CTTC AGCCA GAAG GTTAACAAGAAGATG rplD 366633 - 367256 + | 50S ribosomal protein L4 rplW 367253 - 367555 + | 50S ribosomal protein L23 rplB 367555 - 368382 + | 50S ribosomal protein L2 rpsS 368393 - 368668 + | 30S ribosomal protein S19 rplV 368678 - 369007 + | 50S ribosomal protein L22 rpsC 369017 - 369802 + | 30S ribosomal protein S3 rplP 369804 - 370217 + | 50S ribosomal protein L16 Daro_0327 370220 - 370414 + | 50S ribosomal protein L29 Daro_0328 370411 - 370677 + | SSU ribosomal protein S17P TERM 335 370734 - 370713 - f 88 -11.6 -3.76224 | opp_overlap 370713, overlap 370716 TGCGCAGTGATCAAA GAAGCCGG TATAAT CCGGCTTC TTTTTTGCAACTGCC TERM 336 370713 - 370734 + F 100 -11.6 -5.03314 | opp_overlap 370713 370716 TGCGCAGTGATCAAA GAAGCCGG TATAAT CCGGCTTC TTTTTTGCAACTGCC TERM 337 370731 - 370716 - f 74 -7.5 -4.015 | opp_overlap 370713, overlap 370713 GCAGTGATCAAAGAA GCCGG TATAAT CCGGC TTCTTTTTTGCAACT rplN 370831 - 371199 + | 50S ribosomal protein L14 rplX 371207 - 371527 + | 50S ribosomal protein L24 TERM 338 371702 - 371692 - g 71 -8.2 -4.10453 | GAAAGTTCTGGAAAA CGCC GTT GGCG ACATGCAGAAGATTG rplE 371537 - 372076 + | 50S ribosomal protein L5 Daro_0332 372084 - 372389 + | SSU ribosomal protein S14P rpsH 372405 - 372800 + | 30S ribosomal protein S8 rplF 372811 - 373341 + | 50S ribosomal protein L6 rplR 373351 - 373707 + | 50S ribosomal protein L18 rpsE 373735 - 374262 + | 30S ribosomal protein S5 rpmD 374266 - 374448 + | 50S ribosomal protein L30 rplO 374452 - 374886 + | 50S ribosomal protein L15 secY 374907 - 376229 + | preprotein translocase subunit SecY TERM 339 376376 - 376356 - g 74 -6.1 -4.57569 | opp_overlap 376346 376358, overlap 376358 TCATTTCCGGAAAAA TGCGGATGC ATT ACATCCGTA TCCTTCCCGGAGACA infA 376238 - 376456 + | translation initiation factor IF-1 Daro_0341 376532 - 376645 + | 50S ribosomal protein L36P TERM 340 376859 - 376835 - g 71 -5.8 -4.34557 | gap 2, opp_overlap 376836, overlap 376837 AACGTAAAAATGAAA GA-CC-TGTCCG ATT CGGACATGGATC GTCTGCGTGACGAAG TERM 341 376855 - 376837 - g 71 -8.8 -3.7557 | opp_overlap 376836, overlap 376835 CGTAAAAATGAAAGA CCTGTCCG ATT CGGACATG GATCGTCTGCGTGAC rpsM 376697 - 377059 + | 30S ribosomal protein S13 TERM 342 377144 - 377116 - g 73 -8.7 -3.97741 | AAAGGTCAAGAAGAA CGTTGCTGAGGGC ATT GCCCACATCCACG CATCGTTCAACAATA Daro_0343 377072 - 377461 + | 30S ribosomal protein S11 rpsD 377474 - 378103 + | 30S ribosomal protein S4 Daro_0345 378127 - 379101 + | DNA-directed RNA polymerase subunit alpha TERM 343 379082 - 379117 + F 76 -12.6 -2.57132 | overlap 379081 AAAATTGGCCGCCCG CCGGTCTGGAAAAGGC GTAA GCCTTTTTCAACCCGG GTTGTCAAGGGACGC Daro_0346 379158 - 379556 + | 50S ribosomal protein L17P TERM 344 379604 - 379576 - T 83 -12.6 -3.40173 | gap 1, opp_overlap 379577 379583, overlap 379566 379583 AGAAATTCTCAAATA GAAAAAAGGCCGG TTCT CCGGCCTTTTT-C TTTGGCTGCCAATTT TERM 345 379577 - 379604 + T 88 -12.8 -3.66095 | opp_overlap 379566 379576 379583, overlap 379583 GAAATTCTCAAATAG AAAAAAGGCCGG TTCT CCGGCCTTTTTC TTTGGCTGCCAATTT TERM 346 379598 - 379583 - T 100 -11.8 -5.56264 | opp_overlap 379577 379583, overlap 379576 CTCAAATAGAAAAAA GGCCGG TTCT CCGGCC TTTTTCTTTGGCTGC TERM 347 379583 - 379598 + T 100 -11.8 -5.30616 | opp_overlap 379583 379576, overlap 379577 CTCAAATAGAAAAAA GGCCGG TTCT CCGGCC TTTTTCTTTGGCTGC TERM 348 379606 - 379616 + T 72 -5.4 -4.44667 | CTCCGGCCTTTTTCT TTGG CTG CCAA TTTCTTATTAAGGGC Daro_0347 381165 - 379624 - | PAS TERM 349 380364 - 380383 + g 100 -9.2 -4.76213 | overlap 380353 AGTAGTCCTGCAGCT GCTGGGCG TTTT CGCGCAGC TTTTGTTCGGTTTCT TERM 350 381104 - 381143 + g 74 -3.4 -4.84262 | opp_overlap 381093, overlap 381093 AAGACCTGGAGAATG TGCAGGTTGGTGCGGTTG TCAT CAACCGCCAGTACCTTCA TTTTGTTCATTATTG Daro_0348 383137 - 381320 - | ABC transporter, transmembrane region:ABC transporter related Daro_0349 383179 - 383634 + | thioesterase superfamily protein Daro_0350 383695 - 384900 + | aromatic hydrocarbon degradation protein TERM 351 384972 - 385008 + G 72 -11.6 -3.3062 | overlap 384975 385005 GCTGCGTGAAGGGGT GATCATGTTGATCGCG CTGGT CGCGGTCTACATGCTC TTCGTGCTGTTTCGC Daro_0351 384922 - 385437 + | hypothetical protein TERM 352 385734 - 385707 - g 74 -5.4 -4.56597 | CCGGTTCCGGAAAAA GTTGAGGCTCCT GCCG AGGCGCCGCCAC CGCCGACGGTGGACG Daro_0352 385446 - 386243 + | sporulation related Daro_0353 386565 - 386248 - | hypothetical protein Daro_0354 387025 - 386699 - | TPR repeat-containing protein Daro_0355 387078 - 387461 + | endoribonuclease L-PSP TERM 353 387559 - 387580 + G 80 -11.6 -3.80014 | opp_overlap 387549 387559 AGAAGCTCGCCAAGA TCGGCCTC CATAGC GAGGCCGA TTTGCTGGTGCATCT Daro_0356 387480 - 389531 + | ATP-dependent DNA helicase RecG Daro_0357 390381 - 389521 - | transcriptional regulator Daro_0358 390481 - 391683 + | hypothetical protein Daro_0359 391698 - 392681 + | zinc-containing alcohol dehydrogenase superfamily protein Daro_0360 392693 - 392896 + | 4-oxalocrotonate tautomerase TERM 354 392885 - 392902 + F 79 -4 -5.03314 | ACCGTTCGTCGGGCG CGCGGC GAGTAA GCCCCG TTTTTTGAAAATCCA TERM 355 392931 - 392958 + F 100 -17.8 -5.00884 | opp_overlap 392931 CATCAAGCATTAGAA TTCCGGCTGGCC CTGC GGTCAGCCGGAA TTTTTTGCCAGAAAT TERM 356 392958 - 392931 - f 100 -15.6 -3.47941 | opp_overlap 392931 CATCAAGCATTAGAA TTCCGGCTGGCC CTGC GGTCAGCCGGAA TTTTTTGCCAGAAAT Daro_0361 392981 - 394048 + | NADH:flavin oxidoreductase/NADH oxidase Daro_0362 394045 - 394611 + | hypothetical protein TERM 357 394838 - 394853 + T 76 -4 -5.00616 | gap 1, overlap 394838 394839 ACGCTGCTGCCCTGA C-GGATC ACG GATCCCG TTTTTTGCAGCAGGC TERM 358 394907 - 394936 + T 90 -15.1 -2.7806 | opp_overlap 394908 394914, overlap 394914 TGGCTCGGCGAAACC AGAAAAAGCCGGG GATT CCCGGCTTTTTCA ATTTCAGCGTTTCGG TERM 359 394935 - 394908 - T 100 -18.6 -2.90496 | opp_overlap 394907 394914, overlap 394914 GGCTCGGCGAAACCA GAAAAAGCCGGG GATT CCCGGCTTTTTC AATTTCAGCGTTTCG TERM 360 394929 - 394914 - T 100 -11.8 -5.04325 | opp_overlap 394907 394914, overlap 394908 GCGAAACCAGAAAAA GCCGGG GATT CCCGGC TTTTTCAATTTCAGC TERM 361 394914 - 394929 + T 100 -11.8 -4.81249 | opp_overlap 394914 394908, overlap 394907 GCGAAACCAGAAAAA GCCGGG GATT CCCGGC TTTTTCAATTTCAGC Daro_0363 395853 - 394966 - | Alpha/beta hydrolase fold TERM 362 395956 - 395929 - R 100 -18.5 -3.25823 | opp_overlap 395924 395923 GGCTGCGGATAGGAA TCGGGTCGGCC GTGACT GGCCGACCCGA TGGCGCGGTTTTGGT Daro_0364 397291 - 395978 - | ABC transporter TERM 363 396863 - 396899 + g 71 -7.2 -4.2828 | gap 1 ATCGGCCCAGTCGTC GGCGGTCA-GCGCCTCG CGGG CGAGGGGCATGACATCC TTTTCCTCGCTGCGG TERM 364 397193 - 397181 - G 85 -6.9 -4.75174 | opp_overlap 397188, overlap 397183 CAGCGAAGTGAAAAA CGCCG TTT CGACG TGGCCGCCGCCGTCG Daro_0365 398066 - 397305 - | ABC transporter related Daro_0366 399002 - 398070 - | inner-membrane translocator Daro_0367 399880 - 399005 - | inner-membrane translocator Daro_0368 400995 - 399946 - | ferredoxin:oxidoreductase FAD/NAD(P)-binding:oxidoreductase FAD-binding region TERM 365 400629 - 400657 + g 71 -8.7 -3.8211 | CGACCGGGCGCAGGC GCAGCTCGACGAC GCG GGCGGCGATCTGC TTCTTGTCGGTGACG Daro_0369 402120 - 401092 - | hypothetical protein TERM 366 401596 - 401619 + g 72 -13.2 -2.57931 | opp_overlap 401589 401592, overlap 401592 401589 401595 401598 GCTGAACAGCACGGC CAGGTCGTAC TTGG GTACGGCCTG CTTGTAGCCGGTCCA Daro_0370 402501 - 404165 + | phenylacetic acid degradation protein paaN2 TERM 367 404451 - 404475 + GF 72 -10 -3.28712 | gap 1 TTCCATCCGCGTGCT GGTGCTGACCG GTGC CGGTC-GCGCC TTCTGCGCCGGCCAG TERM 368 404688 - 404706 + GF 74 -8.1 -4.09685 | overlap 404663 404663 404704 GGTCGCCACCAAGTC GGCTTGC TTCCT GCAGGCC TTTTCCAAGATAGGG Daro_0371 404296 - 405090 + | enoyl-CoA hydratase Daro_0372 405065 - 406624 + | 3-hydroxybutyryl-CoA dehydrogenase Daro_0373 406617 - 407087 + | phenylacetic acid degradation-related protein:phenylacetic acid degradation protein PaaD Daro_0374 407112 - 408437 + | phenylacetate-CoA ligase Daro_0375 408448 - 409653 + | thiolase Daro_0376 409681 - 410826 + | extracellular ligand-binding receptor TERM 369 411510 - 411482 - g 74 -13.1 -3.15544 | CGCCAGGGCTACGAA GCCCTGCTGGTCA TGA TGACCGGCACGGC CGAGCAGAAGGCCAT Daro_0377 410915 - 411928 + | phenylacetate-CoA oxygenase subunit PaaA Daro_0378 411925 - 412218 + | phenylacetate-CoA oxygenase subunit PaaB Daro_0379 412218 - 413000 + | phenylacetate-CoA oxygenase, PaaI subunit Daro_0380 413004 - 413504 + | phenylacetate-CoA oxygenase, PaaJ subunit Daro_0381 413527 - 414624 + | ferredoxin:oxidoreductase FAD/NAD(P)-binding:oxidoreductase FAD-binding region TERM 370 414649 - 414680 + F 100 -12.9 -5.40072 | overlap 414650 CCAACAGCTGCACTT GGACCGCCCACGG CTCCCT CCGGGGGCGGTCA TTTTTTTGGAGCAAA TERM 371 414650 - 414679 + F 100 -16.4 -3.83561 | overlap 414649 CAACAGCTGCACTTG GACCGCCCACGG CTCCCT CCGGGGGCGGTC ATTTTTTTGGAGCAA TERM 372 414821 - 414784 - g 73 -10.5 -3.69283 | overlap 414785 414787 GAACGCACTGAACAA CGACGTCGTCGACGGCA TCGG TGCCGCCATCGACATCT ACGAAGCCGACGAGA TERM 373 414820 - 414785 - g 73 -14 -2.81088 | overlap 414784 414787 AACGCACTGAACAAC GACGTCGTCGACGGCA TCGG TGCCGCCATCGACATC TACGAAGCCGACGAG TERM 374 415243 - 415213 - g 75 -8.2 -4.19238 | GGCCGAAGCCGAAAA GGCCGGGCTGGT CGCCCGC ATCATCCCGGCC GAGCAACTGCTCGAC Daro_0382 414698 - 415471 + | short chain enoyl-CoA hydratase Daro_0383 415483 - 416262 + | enoyl-CoA hydratase Daro_0384 417100 - 416303 - | IclR family transcriptional regulator TERM 375 416549 - 416594 + g 84 -17.6 -2.74012 | gap 1, overlap 416541 AATCTCGGCCAGCAG CGCCTCGACTGCCGCCTTGCT CTTCA AGTCGGGCGGCAG-CGGGGCG TGCTTCAACTCCTCG TERM 376 416668 - 416656 - G 73 -4.7 -4.58395 | overlap 416657 416658 TCCAGGCGGCAAAAA CCCGC CCG GCGGC CGACATCAGCAGATC TERM 377 416765 - 416789 + g 88 -13.6 -3.56704 | overlap 416761 CGGGCCACCATCCCC CCAGACCGCG AGGGC CGTGGTCTGG TTGATTTCGTCACGC Daro_0385 417174 - 417785 + | phenylacetic acid degradation protein PaaY Daro_0386 418970 - 417912 - | phenylacetic acid degradation operon negative regulatory protein PaaX TERM 378 419028 - 419043 + r 79 -4.8 -4.92363 | opp_overlap 419028 TACTGATACGGAAAA TACAAA TATT TTTGTA TTTTTGTACCTGTTT Daro_0387 419641 - 419183 - | hypothetical protein Daro_0388 419775 - 420026 + | hypothetical protein TERM 379 421821 - 421861 + G 71 -8.2 -4.07568 | gap 2, opp_overlap 421806 GGGCGCCTATCTCTA CGG-AGCCCCG-GCGGCTGG CAA CCAGCTGCTCGGCGTGGCCG TTTTCGAGCGCCAGA TERM 380 425255 - 425214 - g 82 -9.4 -4.42238 | opp_overlap 425213 425240 CGACGGGAAGGAAAA GCCGGCGGCTG-TTCCGGTG CCTG CACCAGCCGCAGC-GCCGGC AGTTGTGCCAACGCC Daro_0389 420106 - 425289 + | Alpha-2-macroglobulin, N-terminal:Alpha-2-macroglobulin, N-terminal 2 TERM 381 425345 - 425394 + G 72 -13.5 -2.50307 | gap 1, overlap 425344 GGTGGTTGAGCCGCC GTCCG-CGCTGGCAGTGGGGCGCG CTG CTCGCCCTGCTGCTACTGGCGGGC CTTGATGCGGCTTTC TERM 382 425457 - 425484 + G 70 -10.4 -3.53091 | overlap 425450 425458 TGCGCTGCTGATCGT TGCCCGCGACGG CACG CCGCTGCGGGCC TTTCCGGACCGCGAT TERM 383 425458 - 425483 + G 73 -13.9 -2.71712 | overlap 425457 425450 GCGCTGCTGATCGTT GCCCGCGACGG CACG CCGCTGCGGGC CTTTCCGGACCGCGA TERM 384 426922 - 426960 + G 84 -9.5 -4.56775 | gap 1 CGTCTGACCGTCGGC GTCTGGATCGGCCG-GCC GGAT GGCACGCCCAATCCGGGC TTTTTCGGCGCCAAT Daro_0390 425296 - 427638 + | penicillin-binding protein 1C Daro_0391 427796 - 431080 + | Rhs element Vgr protein TERM 385 432134 - 432118 - g 72 -2.9 -4.86033 | opp_overlap 432120, overlap 432120 AAAGTTGCAGAAAAA GATGCAG AGG CCGCATT TCCCAACCAAAAAGG TERM 386 433185 - 433195 + G 71 -5.4 -4.36914 | CAATGGCCTGATGCC CTTC CAG GAAG TTTTCTGGAAAGCCA Daro_0392 431086 - 433428 + | phospholipase D/transphosphatidylase Daro_0393 433425 - 434564 + | hypothetical protein TERM 387 434742 - 434765 + F 84 -3.8 -5.23943 | opp_overlap 434748, overlap 434743 434755 ATGATTTTATTCAGC ACCATAGCTT CACT AAGCCATGGG TTTATTTTTTTCCTG TERM 388 434755 - 434769 + F 100 -5 -5.53991 | opp_overlap 434748, overlap 434743 434742 GCACCATAGCTTCAC TAAGCC ATG GGTTTA TTTTTTTCCTGCATG Daro_0394 434949 - 437384 + | Rhs element Vgr protein TERM 389 438275 - 438259 - g 76 -12.3 -3.3344 | ATTGAACCGTTACAA CCCATGC ATT GCATGGG CAAAGCCGCTCAAGG TERM 390 439446 - 439500 + G 76 -12.9 -3.32963 | TCGTCGACGACCGCT TCGCGCT-GCTCGGCAGCGCCAACGTC AAC GACCGTAGC-CTGCTGGGCGAGCGCGA TTCTGAAATCGCCGT Daro_0396 437651 - 440107 + | phospholipase D/transphosphatidylase Daro_0397 440112 - 441179 + | hypothetical protein TERM 391 441473 - 441497 + G 81 -4.2 -4.88228 | TTGCTCCAATCCATA GCTGCCGG CCTGCGCCC CCGCCAGC TTTTTGATGTTCCCT TERM 392 441580 - 441569 - g 74 -3.6 -4.73388 | overlap 441572 AACGGGCAGGAAAAA CACG CCAT CGCG ATGACCTACCGTCTC Daro_0398 441230 - 442042 + | phospholipase D/transphosphatidylase Daro_0399 442062 - 442487 + | hypothetical protein Daro_0401 443517 - 443828 + | regulatory protein, ArsR TERM 393 443922 - 443949 + G 72 -2.6 -4.74215 | overlap 443917 443924 GTTTCGATCATCAGC GCCTGCTGATCG TTGC CAATCATCAGTC TTTTCTTGATGGTCT TERM 394 445739 - 445718 - g 95 -10.9 -4.58283 | gap 1 GAAGTCGTCGAAAAA CTGGCGACGG CGA CC-TCGCCAG CCTTGCCCCACGCCG Daro_0402 443828 - 445969 + | AMP-dependent synthetase and ligase:phospholipid/glycerol acyltransferase TERM 395 446284 - 446303 + G 70 -5 -4.56597 | gap 1 CCGGAGTTGTCGCGG CTGTTCTGG CAA CCAG-GCAG TTTTTACACGGGGCA Daro_0403 445986 - 446333 + | hypothetical protein Daro_0404 446323 - 447570 + | amidohydrolase 2 TERM 396 449267 - 449288 + G 78 -5.1 -4.83615 | GGTCATACCGATGGC GCTGTCC GGCCTGTG GGGCAGC TTTTTCTCGCGGGTC Daro_0405 447567 - 449447 + | phospholipid/glycerol acyltransferase Daro_0406 449533 - 449835 + | hypothetical protein TERM 397 449831 - 449816 - f 72 -6.1 -4.37886 | opp_overlap 449815 CCAGCCCGGACAAAA CGGAC GGAAAT GTCCG ATGATTCCCGCCGAG Daro_0407 449832 - 450590 + | prolipoprotein diacylglyceryl transferase TERM 398 450594 - 450584 - f 74 -3.2 -4.98531 | TCCGGAAAGGAAAAA CGCA TGA TGCA GATTCTCAAGGTGCT Daro_0408 450587 - 450823 + | hypothetical protein TERM 399 451276 - 451304 + G 78 -2.2 -5.06103 | overlap 451263 451293 GATGTGGTGCAGTTG TCCGGCGGCGAG CCGAC CCTGCACCCGGA TTTTTTCGCCATTCT Daro_0409 450820 - 452244 + | radical SAM family protein TERM 400 452257 - 452270 + F 86 -5.9 -5.13741 | overlap 452249 452259 TAGGCTTGGGCTGGC TGGGG GCTG CCCCG TTTTTCTTCCCTTCG Daro_0410 452373 - 453197 + | hypothetical protein Daro_0411 453227 - 454180 + | PAS:GGDEF Daro_0412 454289 - 455050 + | hypothetical protein TERM 401 455056 - 455026 - f 76 -11 -3.28712 | opp_overlap 455051 GGTGGCCTGGCAGAA GGCGAGCCGGACCG GCA CGGCCTGAATCGCC AAGAGGCGGCCCTTT TERM 402 455180 - 455155 - g 78 -4.7 -4.73388 | gap 1, overlap 455156 455157 455159 AACCTCTACGAAAAA CTGATGCGGCTC GAC AAGCCG-ATCGG CATCCTGCTGCTGCT TERM 403 455901 - 455915 + G 71 -5.6 -4.36914 | opp_overlap 455900 CGGCCGGGAACGGAT GCCGTG CTT CAAGGC TTTTCTGCACAACAA Daro_0413 455110 - 456000 + | 4-hydroxybenzoate octaprenyltransferase Daro_0414 455994 - 456419 + | hypothetical protein Daro_0415 456416 - 457879 + | 3-octaprenyl-4hydroxybenzoate decarboxylase TERM 404 458153 - 458107 - f 100 -21.6 -3.19192 | opp_overlap 458108 CTGGAGCCAAGGCAA GGGCTCCGGCTGAGTACATGCA ACC CGCGTGTACTCAGCCGGGGCCT TTTTTGTTTTTGTCT TERM 405 458108 - 458152 + F 100 -28.8 -5.98675 | opp_overlap 458107 TGGAGCCAAGGCAAG GGCTCCGGCTGAGTACATGC AACCC GCGTGTACTCAGCCGGGGCC TTTTTTGTTTTTGTC Daro_0416 458185 - 458352 + | hypothetical protein TERM 406 458369 - 458388 + G 95 -15 -4.08216 | opp_overlap 458362 CGCAGCAATCGCCGA GCGTGCCG CCCG CGGCACGC TTTTCCAAGCGCTCG Daro_0417 458349 - 459722 + | radical SAM family protein TERM 407 459975 - 460013 + G 72 -10.9 -3.3506 | GCGCTGGCCTGGCTC GACGGCAAGGCGGTCGG CCTGA TCGACTGCTTCGCCGGC TTCTCCACCTTTGCC Daro_0418 459726 - 460280 + | acetyltransferase Daro_0419 460284 - 460685 + | hypothetical protein Daro_0420 460751 - 463114 + | PAS Daro_0421 463719 - 463111 - | hypothetical protein TERM 408 463385 - 463370 - G 74 -7.5 -4.37092 | ATCCCGGCCAGAAAA CCGCC CATCAC GGCGG CGAAGCCACGGTTCA TERM 409 463622 - 463583 - G 76 -14.3 -2.52834 | gap 1, overlap 463582 TAGTGGATCAGGAAG GCGATGCCGACCGTGCCG CCGGT CAGCA-GGCCGGCTTCGC GGAACAGGAAGATGG Daro_0422 464439 - 463744 - | hypothetical protein Daro_0423 465871 - 464432 - | D-alanyl-D-alanine carboxypeptidase PBP3 TERM 410 465739 - 465752 + g 78 -2.3 -5.01732 | TATCGACCGCCTGGA TGACG ACTG CGACA TTTTTTGCGGGAATT TERM 411 466187 - 466202 + G 81 -6 -4.77896 | opp_overlap 466176 466177, overlap 466189 GAAACCCTCGCCCGT GAGCGG GGAG CCGCGC TTTTTCGGTTGGTTG TERM 412 466560 - 466535 - g 70 -3.9 -4.70659 | opp_overlap 466534 466535 GTGCAGAGTGAAAAA GGGGCTATGCA TCGC TATATGGCCCC CTTGTTCGTCAAGCA Daro_0424 466019 - 468166 + | PAS:GGDEF groES 468403 - 468693 + | co-chaperonin GroES TERM 413 469742 - 469720 - g 71 -6.2 -4.41047 | overlap 469723 AGTCGCCAAGGAAAA CACCACCATC ATC GACGGTGCCG GCGAAGCTGCTGCCA groEL 468734 - 470386 + | chaperonin GroEL TERM 414 470417 - 470435 + F 100 -13.1 -5.06414 | opp_overlap 470417 TCAAGCTCAACGAAA GCCCCGC CTTGT GCGGGGC TTTTTGTTGGCAAAA TERM 415 470435 - 470417 - f 100 -13.1 -3.93369 | opp_overlap 470417 TCAAGCTCAACGAAA GCCCCGC CTTGT GCGGGGC TTTTTGTTGGCAAAA Daro_0427 470602 - 470910 + | hypothetical protein Daro_0428 470912 - 472591 + | Na+/solute symporter TERM 416 472633 - 472616 - f 100 -14.1 -4.83169 | opp_overlap 472616 ATCTCGTCACAAAAA GCCCGGG GTTT CCCGGGC TTTTTTTCGTCTTGA TERM 417 472616 - 472633 + F 100 -14.1 -5.63374 | opp_overlap 472616 ATCTCGTCACAAAAA GCCCGGG GTTT CCCGGGC TTTTTTTCGTCTTGA TERM 418 472705 - 472727 + F 100 -9.8 -4.93877 | overlap 472706 ATATGGGCGTGCTTG TGCGCTGCGG GAA TCGCAGTGCG TTTTATTTGATAGAC TERM 419 472706 - 472726 + F 78 -11.1 -3.55603 | overlap 472705 TATGGGCGTGCTTGT GCGCTGCGG GAA TCGCAGTGC GTTTTATTTGATAGA Daro_0429 472916 - 473587 + | response regulator receiver:transcriptional regulatory protein, C-terminal TERM 420 473648 - 473661 + G 77 -3.7 -4.9725 | GATCCTCGACTGGAT GCTGG CGCC CCTGC TTTTTGTCTGGCCGT TERM 421 473960 - 473974 + G 70 -10 -3.53012 | opp_overlap 473960 473957 TTCCGGCGAAATCTA TCAGCG AGA CGCTGA TTTCAAGGGGCAGGA Daro_0430 473565 - 475070 + | sensor histidine kinase TERM 422 475271 - 475250 - f 100 -12.3 -4.82154 | opp_overlap 475250 AATTCATAGCAAAAA CGGCAACCC ATTC AGGTTGCCG TTTTTCATTTCAGCG TERM 423 475250 - 475271 + F 100 -11.6 -4.98531 | opp_overlap 475250 AATTCATAGCAAAAA CGGCAACC CATTCA GGTTGCCG TTTTTCATTTCAGCG TERM 424 475313 - 475323 + G 75 -8.2 -4.25283 | overlap 475296 GCATGCCGGTGGATT GCCG GTG CGGC TTTTCCTGCCACGGT TERM 425 475494 - 475471 - g 72 -13.2 -2.57463 | overlap 475460 475459 475470 AAGCGGCGCCAGAAG CTGCTCGCCA AAGG TGGCGAGCAA GAGCCAGGGGGGCTG Daro_0431 475300 - 475581 + | hypothetical protein Daro_0432 475632 - 476369 + | hypothetical protein TERM 426 476454 - 476475 + F 100 -11.6 -5.54907 | TTACCAGCGTTGGAG CGGCTTCC CGGGAT GGAAGCCG TTTTTGTTTTCTGCC Daro_0433 476542 - 477024 + | phosphohistidine phosphatase, SixA Daro_0434 477081 - 478199 + | hypothetical protein Daro_0435 478687 - 478196 - | hypothetical protein TERM 427 478274 - 478315 + g 100 -15.1 -5.03314 | gap 1, overlap 478275 478276 478278 CATTTGCACGGAGGC GATACGGCCGCCGAGTCGGG TTA CCCGGC-CGGTGGCCGTAAA TTTTTTGCCGATGCC TERM 428 478275 - 478314 + g 100 -18.6 -3.61506 | gap 1, overlap 478274 478276 478278 ATTTGCACGGAGGCG ATACGGCCGCCGAGTCGGG TTA CCCGGC-CGGTGGCCGTAA ATTTTTTGCCGATGC TERM 429 478276 - 478313 + g 100 -22.1 -2.76422 | gap 1, overlap 478275 478274 478278 TTTGCACGGAGGCGA TACGGCCGCCGAGTCGGG TTA CCCGGC-CGGTGGCCGTA AATTTTTTGCCGATG TERM 430 478278 - 478311 + g 95 -20.3 -2.92111 | gap 1, overlap 478276 478275 478274 TGCACGGAGGCGATA CGGCCGCCGAGTCGGG TTA CCCGGC-CGGTGGCCG TAAATTTTTTGCCGA Daro_0436 479405 - 478713 - | hypothetical protein Daro_0437 480311 - 479421 - | protein phosphatase 2C-like TERM 431 479558 - 479572 + g 73 -5 -4.68593 | overlap 479543 TCAGGTGTTGGGCAG CCAATT CCA GATTGG TTTTTAGCTGGTCCA TERM 432 480527 - 480545 + G 72 -2.4 -4.82901 | gap 1, opp_overlap 480523, overlap 480526 TGTCTAAAGATGAGG CGCTTGC CTTCGA GCA-GCG TTTTTATCGCGAGGC TERM 433 481228 - 481218 - g 72 -2.4 -4.77157 | CGAAGCCAGGAAAAA GGCC GAG GGCG ATGACCAAGTCCGTA TERM 434 481260 - 481248 - g 73 -10.5 -3.63569 | opp_overlap 481246 481245 481252 CCAAGTCCGTAACAA GCGCC AGG GGCGC GATGCTTCGTCACCT Daro_0438 480379 - 481752 + | protein kinase Daro_0439 481761 - 482252 + | hypothetical protein TERM 435 482300 - 482269 - T 100 -15.2 -3.25823 | overlap 482273 CTTCCGTTAGATGAA GAAAGGGCGACGGT GGAA ACCATCGCCCTTAC CGAACGCCAAGAATG TERM 436 482296 - 482273 - T 100 -14.6 -4.29106 | overlap 482269 CGTTAGATGAAGAAA GGGCGACGGT GGAA ACCATCGCCC TTACCGAACGCCAAG Daro_0440 484102 - 482327 - | dihydrolipoamide dehydrogenase TERM 437 483771 - 483717 - G 93 -15.5 -3.61894 | AAGGCGGCGGAATAA CCGCCGGGGCCGGCGCCGAGGACGA GCATT TCGCACTCGATGTCGGCACCGCCGG CATGGCTGCCGGCGA TERM 438 483831 - 483799 - G 82 -14.7 -3.14564 | CGACCGGGGCAGCAA CCGGCACCGCTGCAG GAG CGGCAGCGGGGGCGG CGGCTTGCGGGGCCG Daro_0441 485755 - 484115 - | dihydrolipoamide acetyltransferase TERM 439 484633 - 484649 + g 72 -2.1 -4.72729 | overlap 484635 AAGCGAGCATGGTCA GCTTGGC GCC GCCACCC TTTTCGTTTTCCTTG TERM 440 485252 - 485282 + g 93 -17.6 -3.36492 | TTCCTTGACCGTACC GGCGACGGTGGACG GAA CATCCATCGTCGCC TTGTCGGATTCCAGC TERM 441 485594 - 485624 + g 72 -11.8 -3.36492 | TTCCTTGACGACGCC GGCAACGGTGGAAG GAA CATCCATCGTGGCC TTGTCGGATTCCAGC aceE 488443 - 485768 - | pyruvate dehydrogenase subunit E1 TERM 442 486262 - 486281 + g 77 -11.4 -3.62046 | gap 1 GCAGCTGAACGCGCG GGGCAGCCG AAT CGGC-GCCC TTCTTGAACAGGTAC Daro_0443 488459 - 488701 + | hypothetical protein Daro_0444 488994 - 488698 - | hypothetical protein Daro_0445 489596 - 488997 - | putative denitrification protein NorE TERM 443 489584 - 489595 + g 90 -4.4 -5.40072 | overlap 489575 GGGGTTCGTCGATGG TGAC GGCG GTCA TTTTTTTGCCAAGGG TERM 444 490116 - 490130 + G 80 -11.4 -3.71284 | CTGGTGATCGCCATC GCCGAC GAT GTCGGC TTGTCTTCCTCGCAG Daro_0446 489783 - 491657 + | 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein TERM 445 491851 - 491878 + G 77 -11.2 -3.64703 | opp_overlap 491850, overlap 491850 GTCGCCGCAGATTAC GCCGGGCACGGC CGAC GTCTTGCTCGGC TTTGAATCGGCCGAG Daro_0447 491654 - 492265 + | indolepyruvate oxidoreductase subunit B TERM 446 492286 - 492320 + F 83 -5.1 -5.10461 | gap 1, opp_overlap 492292, overlap 492291 492292 GTAAAATCGATCAAA TTCAAA-GGGAAAGGC AATC GCCTTTCCCCTTTTCA TTTTTGTTGGATGCG TERM 447 492291 - 492314 + F 100 -11 -4.86293 | opp_overlap 492292, overlap 492286 492292 ATCGATCAAATTCAA AGGGAAAGGC AATC GCCTTTCCCC TTTTCATTTTTGTTG TERM 448 492292 - 492313 + F 100 -14.5 -3.49335 | opp_overlap 492292, overlap 492291 492286 TCGATCAAATTCAAA GGGAAAGGC AATC GCCTTTCCC CTTTTCATTTTTGTT TERM 449 492313 - 492292 - f 100 -14.5 -3.87149 | opp_overlap 492292 492291 492286 TCGATCAAATTCAAA GGGAAAGGC AATC GCCTTTCCC CTTTTCATTTTTGTT Daro_0448 492339 - 493193 + | methenyltetrahydrofolate cyclohydrolase Daro_0449 493190 - 493690 + | 1-(5-phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR) carboxylase TERM 450 493804 - 493828 + G 74 -7.1 -4.29738 | overlap 493789 CTGGCCATCGGTACT GGTGGTGGC CGGTTAT GCCATCGCC TTTTACTGCCTGTCC TERM 451 493948 - 493994 + G 93 -14.5 -3.97741 | overlap 493993 ATACGGCCAAGTCCT CGATC-TGGCGGCGATGCTGGGC ATT GCCCTG-ATCGTCGCCGGGGTCG TTGTTCTTAACGTTT TERM 452 493993 - 494006 + G 77 -3.1 -5.0133 | overlap 493948 GATCGTCGCCGGGGT CGTTG TTCT TAACG TTTTTTCCAAAACTG Daro_0450 493703 - 494032 + | small multidrug resistance protein TERM 453 494087 - 494103 + G 78 -10.8 -3.89354 | TTGGCATGCTCGGTG GCGGCC AGCTC GGCCGC TTCTTCGTTTCGGCC TERM 454 494875 - 494840 - g 73 -8.9 -3.91084 | TGATCGTCAACGAAA TGGCACCGCGGCCGC ACAACA GCGGCCACTACACCA TTGACGCCTGCGTGA Daro_0451 494032 - 495192 + | phosphoribosylaminoimidazole carboxylase ATPase subunit TERM 455 495525 - 495473 - g 89 -9.9 -4.59773 | gap 3 CGTGATCCTGAAAAA GCAGGCC-TGGGT-TCCCGAC-GCCG TGAC CGGCGGCCAGGATACCGTTGGCCTGC GCGTGCCTGGCCATC Daro_0452 495189 - 496184 + | translation factor SUA5 Daro_0453 496554 - 496216 - | pterin-4-alpha-carbinolamine dehydratase TERM 456 496394 - 496359 - G 70 -10.4 -3.53012 | opp_overlap 496359, overlap 496360 496363 TCTCCCGGTGCGAAA CCCAGGCGATGGCGTT AACG AAGGCCATCGCCTCGT AGTGATTACGAAAAA TERM 457 496393 - 496360 - G 73 -13.9 -2.71712 | opp_overlap 496359, overlap 496359 496363 CTCCCGGTGCGAAAC CCAGGCGATGGCGTT AACG AAGGCCATCGCCTCG TAGTGATTACGAAAA TERM 458 496390 - 496363 - G 72 -14.2 -2.64155 | opp_overlap 496359, overlap 496360 496359 CCGGTGCGAAACCCA GGCGATGGCGTT AACG AAGGCCATCGCC TCGTAGTGATTACGA TERM 459 496752 - 496781 + H 100 -12.3 -4.64334 | opp_overlap 496758, overlap 496758 CCACCATCGACAAAT AAAAAAGGCCTGA TTTT TCAGGCCTTTTTA TTTTGTTCCCCGCTT TERM 460 496758 - 496775 + H 100 -11.3 -5.62288 | opp_overlap 496758, overlap 496752 TCGACAAATAAAAAA GGCCTGA TTTT TCAGGCC TTTTTATTTTGTTCC TERM 461 496775 - 496758 - H 100 -11.3 -5.72622 | opp_overlap 496758 496752 TCGACAAATAAAAAA GGCCTGA TTTT TCAGGCC TTTTTATTTTGTTCC Daro_0454 496857 - 497513 + | CBS TERM 462 497962 - 497946 - g 75 -2.1 -5.0133 | GAGGCCCGGAAAAAA CTGGCCG AGG CGCGCAG GACAAAATACACCTT Daro_0455 497529 - 498935 + | helix-turn-helix, Fis-type Daro_0456 499097 - 500494 + | hypothetical protein TERM 463 501741 - 501766 + G 73 -8.9 -3.91072 | ATGTCTCCAAGTTCG GCCCCCGGC TGGCCGGT GCCGGCGGC TTTATCAACATTTCG Daro_0457 500522 - 502525 + | propionate CoA-transferase TERM 464 502545 - 502520 - f 85 -11.9 -3.58037 | GAGCAACTGGCGAAA CCGTGATGACC GAAG GGTCATTACGG CGCTGACATAGATCC TERM 465 502588 - 502602 + F 70 -7.1 -4.07133 | CATTGGCGGATTGTT GCCCT GCAAA AGGGC TTCTTTCTGGACGTG TERM 466 502684 - 502718 + G 100 -16.5 -4.72007 | CGTAAGACCCGTATT GCGCTGG-GGCTCGCCA TGC TGGCG-GCCGCCGGCGC TTTCTTTTGGTCGCG TERM 467 502965 - 502951 - g 74 -7.1 -4.39426 | GATAGCGTCAGAAAA GGCCA GGTCA TGGCC CGCATTGCCAGCGAT Daro_0458 502636 - 503772 + | secretion protein HlyD Daro_0459 503769 - 506852 + | acriflavin resistance protein Daro_0460 506968 - 509475 + | response regulator receiver:ATP-binding region, ATPase-like:histidine kinase A, N-terminal TERM 468 509462 - 509478 + T 90 -10.1 -4.38712 | overlap 509456 GGCTGGGCAGCGAGC GCCCTGG GCG CTAGGGC TTTTGTCCCGCTGGC Daro_0461 513128 - 509472 - | hypothetical protein TERM 469 512737 - 512750 + g 75 -2.3 -4.88067 | overlap 512738 TCGCCGTAGGACAGC GTGGC AATG GCCAG TTTTTGTACCTCGAT TERM 470 512959 - 512987 + g 85 -12.3 -3.70773 | overlap 512960 TGCAGGCGGCCAAGG TCCAGCGGTCCGC TCA GCCGGCCGCTGGC TTGTTCGATCTGCAA TERM 471 512960 - 512986 + g 79 -15.8 -2.82142 | overlap 512959 GCAGGCGGCCAAGGT CCAGCGGTCCGC TCA GCCGGCCGCTGG CTTGTTCGATCTGCA Daro_0462 514809 - 513130 - | surface antigen (D15) Daro_0463 516879 - 514819 - | site-specific recombinase Daro_0464 517048 - 517701 + | OmpA/MotB TERM 472 517724 - 517741 + F 100 -12.7 -5.22039 | opp_overlap 517724 TCGCTTCACCGAAAA GCCCTGC CTCG GCAGGGC TTTTTTACGTTTGGA TERM 473 517741 - 517724 - f 95 -12.7 -4.18018 | opp_overlap 517724 TCGCTTCACCGAAAA GCCCTGC CTCG GCAGGGC TTTTTTACGTTTGGA TERM 474 519916 - 519926 + G 74 -5.4 -4.53036 | TTACTCGACCAGCCG GGTT TCC AACC TTTTCCTGTTTGTCG Daro_0465 517763 - 519952 + | patatin TERM 475 520482 - 520434 - g 95 -11.5 -4.62069 | GTCGCAGCTGAAAAA CCAGCCACCCCGGCAGGACCGGC AAA ACCGGCCATGCCAGGCAAACCGG CAGTCGACAGCAAGC Daro_0466 519936 - 520733 + | competence protein ComEA helix-hairpin-helix region TERM 476 520991 - 520970 - g 80 -10.1 -4.07568 | opp_overlap 520980 CCTGCTCTGGGAAAA GGTCATCGC TGCC GCGCTGACC GAGGCGGCGCCGCTG TERM 477 522460 - 522434 - g 85 -2.9 -5.40072 | gap 1, overlap 522435 GGCTGGCGAAAAAAA CGCCGAGCTCGA AACC TTG-GCCCGGCA AATGGCTGGCGTAGC Daro_0467 520761 - 523499 + | hypothetical protein TERM 478 526005 - 525992 - g 81 -8.1 -4.63527 | CGACTACCTTAAAAA GCTCG AAGC CGAGC GGGCCGCGCACGAAG TERM 479 526434 - 526421 - g 78 -2.3 -5.0538 | overlap 526422 GCTGATCGCAAAAAA TGGCT TGCC AGCCT GGTCAGACAAACGGA TERM 480 526643 - 526668 + G 89 -11.9 -4.2558 | CACGGATGGCTCGCT CACGGTCAATC ACGT GATCGACCGTG TTTTCGTGGCCGATG Daro_0468 523503 - 526907 + | UvrD/REP helicase TERM 481 527260 - 527274 + G 70 -4.2 -4.56597 | overlap 527261 527262 AGGGTAAGGCCGATA TTGCTG CGG CAGCGG TTTTTGAAACAGCCG TERM 482 527286 - 527307 + G 76 -6.5 -4.56775 | gap 1, opp_overlap 527284 527286, overlap 527288 527291 GCGGTTTTTGAAACA GCCGAGCGTC GTG GACGC-CTGC TTTTTGCCAAACCCT TERM 483 527664 - 527717 + G 74 -3.8 -4.81249 | opp_overlap 527659 AGAGAAGAAATCAAT GCGGCGCTTGATCGCATCAAGCGT AATGGG ACGTATGATCGGATCAATTCCCGC TTTTTGCCTTTCCGG Daro_0469 526989 - 527741 + | extracellular solute-binding protein TERM 484 528594 - 528574 - g 76 -6.7 -4.57073 | overlap 528576 528588 CAGGTCCTGGAAAAA CTGGCCAAC AAG GATGGCCTG ACCGGCCTGATGAAC TERM 485 528663 - 528698 + G 93 -8.2 -5.00884 | gap 1, overlap 528668 GCGGGCGCAGCGCTA TCGGCGGCCGGTCACGG TTG CCATGGCCGACC-TCGA TTTTTTCAAGAAACT TERM 486 528965 - 528911 - g 90 -15.1 -3.60792 | gap 2 GCGCCAACGCCGAAA TCGGCCTGCCCGATGGCCGGACGGTCA AGG TGACGGTC-AGC-ATGGGGCTGGCCGA TGCCAGTGAATGCCC Daro_0470 527827 - 529065 + | GGDEF TERM 487 529619 - 529650 + G 76 -12.3 -3.29739 | gap 1, opp_overlap 529625, overlap 529622 CAGCCGTCTCCGCCT CAAGCAGCGCACCG TCGGC CGG-GCGCTGCTGG TTCGTCTCGGTTCAA TERM 488 529672 - 529698 + G 77 -8.6 -4.34771 | TCGGTTCAATCGTGC TGGCCCTGCTCG TGC TGGGCGGTGCCA TTTTCCTGAATTTTC Daro_0471 529155 - 530822 + | phosphatidylethanolamine:Kdo2-lipid A phosphoethanolamine transferase Daro_0472 531205 - 530831 - | diacylglycerol kinase Daro_0473 534027 - 531202 - | excinuclease ABC subunit A TERM 489 532992 - 533008 + g 71 -7.9 -4.08216 | opp_overlap 532992, overlap 532995 532998 TGCCTGAGCCGTAAA GGACCAG TTG CTGGACC TTTTCCGGCAAGTCG Daro_0474 534258 - 535043 + | peptidase M48, Ste24p TERM 490 535081 - 535102 + T 100 -13.7 -5.42259 | overlap 535067 CCCGATGGCCTCTTG CCCGACGGT TAGT GCCGTCGGG TTTTTTTGCGCCTGG Daro_0475 536073 - 535456 - | hypothetical protein TERM 491 536215 - 536198 - R 70 -4.1 -4.65078 | ACAGCTTCAATAAAA CGGAC GCTTCGAT GTCCG CTATCTGGACAAATC Daro_0476 537251 - 536292 - | LysR family transcriptional regulator TERM 492 537500 - 537474 - R 100 -19.4 -3.73336 | opp_overlap 537474 AGGGGAATGGAACAA GGGCAGGCCGGC ATT GCCGGTCTGCCC TTTGCTTTTGGGCGG TERM 493 537474 - 537500 + r 100 -21.6 -4.19735 | opp_overlap 537474 AGGGGAATGGAACAA GGGCAGGCCGGC ATT GCCGGTCTGCCC TTTGCTTTTGGGCGG Daro_0477 538848 - 537517 - | two component, sigma54 specific, Fis family transcriptional regulator Daro_0478 540695 - 538845 - | histidine kinase TERM 494 539114 - 539151 + g 82 -14.9 -3.14683 | gap 1, overlap 539139 CGAGGCGCGGGCGGG TCTGGTCGGCCATCGCGT CGA GCGCGTTG-CCGACCAGG TTGATCAGCACCTGT TERM 495 540128 - 540140 + g 70 -3.3 -4.62302 | overlap 540129 GCACCGGCGCCTCGA CCGTG GTC CACGA TTTTTCCAACTGTTC TERM 496 540273 - 540262 - G 71 -7.2 -4.16842 | CCGATGCCGAAGAAA CGGC CGTT GCCG CTCTCCAGCGCCTCG Daro_0479 541490 - 540735 - | hypothetical protein TERM 497 541323 - 541344 + g 71 -8.7 -3.71848 | gap 1 CCACAGGGCGGCACC GGT-GCCGGC AAT GCTGGCGACC TTGTTGGTACCGAAC TERM 498 541538 - 541518 - R 100 -18.3 -5.45726 | GATAGGGGAAAAAAA GCCCGGTGC GGT GCACCGGGC AAACAAGCGGGTTCG Daro_0480 542896 - 541595 - | Sodium:dicarboxylate symporter aspA 544360 - 542936 - | aspartate ammonia-lyase TERM 499 544397 - 544415 + H 77 -6 -4.64676 | opp_overlap 544400, overlap 544402 CAAGGCCGCCGGCAT CAAGGC CGTGGGC GCCTTG TTTTATTGCACATGG TERM 500 544820 - 544834 + G 95 -11.4 -4.62471 | GCGCTCGGCGCCTAT GGCCTG ACC CAGGCC TTTTTCCAGATTCCC TERM 501 545399 - 545411 + G 73 -4.7 -4.67048 | overlap 545398 TGGAAGGTCTATCTG CCCGC CGT GCTGG TTTCTTTTGCCATCA Daro_0482 544619 - 545842 + | major facilitator transporter Daro_0483 545859 - 546329 + | single-strand binding protein Daro_0484 546367 - 547215 + | metal-dependent phosphohydrolase Daro_0485 547292 - 549184 + | K+ potassium transporter TERM 502 549196 - 549221 + T 90 -10.3 -4.3277 | overlap 549197 549198 549219 GTAGCGTCGACCGCC AGCGCCAGCGG CCAT CCGCTGGCGAA TTTCTATTCTCTGTC TERM 503 549197 - 549220 + T 89 -13.8 -3.18578 | overlap 549196 549198 549219 TAGCGTCGACCGCCA GCGCCAGCGG CCAT CCGCTGGCGA ATTTCTATTCTCTGT TERM 504 549198 - 549219 + T 95 -17.3 -2.50062 | overlap 549197 549196 AGCGTCGACCGCCAG CGCCAGCGG CCAT CCGCTGGCG AATTTCTATTCTCTG Daro_0486 549776 - 549288 - | cytidyltransferase-related TERM 505 549855 - 549875 + r 74 -7.5 -4.09864 | overlap 549820 ATTCTTGCTGTTCGG CCTGGTTGC TGC GCAATCCGG TTTTCAAGCGTGGGT Daro_0487 550784 - 549879 - | regulatory protein, MerR TERM 506 550881 - 550853 - H 72 -6.7 -4.25056 | overlap 550849 TATCTTACGAACAAA CGTCCTGTTTGTC TAG GACAAATCGAACG AGGAGTTGAACATGT Daro_0488 550893 - 551450 + | glutathione peroxidase Daro_0489 551476 - 552276 + | GTP cyclohydrolase TERM 507 552448 - 552463 + G 76 -9 -4.06384 | overlap 552459 GGAAGGCAAGTCGCA TCCGGT CGAT ACCGGA TTTCTGGTGTTCAAC Daro_0490 552287 - 553606 + | amine oxidase:FAD dependent oxidoreductase Daro_0491 553614 - 554378 + | hypothetical protein TERM 508 554996 - 554980 - gf 81 -9.3 -4.07568 | CGGCTTTGCCGAAAA GGCCGTG CAG CGCGGCC TGGCCGTGACCGGCT Daro_0492 554375 - 555559 + | cyclopropane-fatty-acyl-phospholipid synthase TERM 509 555571 - 555614 + GF 100 -18.8 -3.31144 | gap 1 CTGAGCCGGTGCTCT CGAC-CAGCCGTCGGCGCCTG CTG CTGGCGCTGGCGGCTGCGCCG TTGTCGGCCTACGCC TERM 510 556053 - 556030 - gf 74 -7.4 -4.13767 | gap 1, overlap 556033 GGCTCGACCCGAAAA CCAGCGCGC CCGATTT GCGCGC-GG CCCTGCTCAAGCGAT Daro_0493 555528 - 556079 + | hypothetical protein TERM 511 556577 - 556565 - f 86 -10.5 -3.86916 | opp_overlap 556575 556576 GAGTAGCACAGGAAA CCGGC GAA GCCGG CGCCGCCCTTGGGTC TERM 512 556576 - 556595 + F 80 -5.6 -4.9138 | gap 1, opp_overlap 556565, overlap 556575 GAAACCGGCGAAGCC GGCGCCGCC CTT GG-GTCGCC TTTTCTTTGCGTACT TERM 513 556649 - 556634 - f 75 -4.6 -4.78077 | overlap 556635 GCGAAGCAAAAGAAA GTGCGG CGCG CCGCAA GCGCGAAAAACAACC TERM 514 557375 - 557385 + G 75 -2.4 -4.9218 | TCTGGCCTTCCGTCG CCTG CTG CTGG TTTTTGTCGTCAATG Daro_0494 556734 - 557957 + | major facilitator transporter Daro_0495 557954 - 558487 + | putative lipoprotein TERM 515 558597 - 558621 + G 74 -12.1 -3.15663 | overlap 558607 558611 CGGTGCTCGGCTGGC CCTGTCGGCGC GCA GCGTCGACAAG TTGCTGGCGCTGGGT Daro_0496 558484 - 559239 + | Short-chain dehydrogenase/reductase SDR Daro_0497 559241 - 559663 + | hypothetical protein TERM 516 559707 - 559737 + T 72 -6.8 -4.2558 | overlap 559708 GGGCTGCGAGTTGGC TTTCAGTAGCTTGC CGA GCAGGCTGCCGGAG TTTTCCTGGCCGCTG Daro_0498 561380 - 559689 - | TrkA-N TERM 517 560146 - 560128 - G 74 -6.7 -4.42653 | gap 1 ACGTGATCGAGAAAA CGG-GCCA GCAG TGGCGCCG TCAGGATGGCAATGC Daro_0499 561782 - 561399 - | hypothetical protein TERM 518 561833 - 561796 - R 90 -13.3 -3.5393 | opp_overlap 561797 561828, overlap 561801 561804 ATGATGCCCCCCAAA TGCAATCAGGGCGTGCC ATGC GGCACGCCCTGTCAGCT TACTCCTGTCGGGCC TERM 519 561797 - 561832 + r 95 -14.6 -3.24747 | opp_overlap 561796 561801 561804, overlap 561828 TGATGCCCCCCAAAT GCAATCAGGGCGTGCC ATGC GGCACGCCCTGTCAGC TTACTCCTGTCGGGC TERM 520 561828 - 561801 - R 100 -17 -3.27525 | opp_overlap 561797, overlap 561796 561804 GCCCCCCAAATGCAA TCAGGGCGTGCC ATGC GGCACGCCCTGT CAGCTTACTCCTGTC TERM 521 561825 - 561804 - R 100 -17.3 -2.81888 | opp_overlap 561797, overlap 561801 561796 CCCCAAATGCAATCA GGGCGTGCC ATGC GGCACGCCC TGTCAGCTTACTCCT Daro_0500 562533 - 561865 - | transport-associated protein TERM 522 562505 - 562521 + g 78 -6.5 -4.7078 | opp_overlap 562494, overlap 562494 ATCATCAGCAGGGCA GCCAGGC TGA GTTTGGC TTTTTGCATCATTCG Daro_0501 563120 - 562530 - | phosphoheptose isomerase Daro_0502 563527 - 563162 - | hypothetical protein Daro_0503 563867 - 563505 - | hypothetical protein TERM 523 563896 - 563879 - g 74 -3.3 -4.84359 | opp_overlap 563879 563880, overlap 563880 GCATGCTGATAAAAA TGACGGA AGAA TCCGCCG TATTGTATGTCGTCC TERM 524 564061 - 564024 - g 79 -16.4 -2.70932 | gap 1, overlap 564049 CCCCTTGCTCAAGCA GCTTGGTGCGCCGGCAC GAACG ATACCGGCGCACCA-GC ATAACGAACACGAAG TERM 525 564115 - 564100 - g 73 -4.6 -4.58395 | opp_overlap 564108, overlap 564102 CGTATCGTCGAAAAA CTGCGC TCCG GCGAAG CGGTCGCCCTGATTT TERM 526 564260 - 564272 + G 74 -4.1 -4.73682 | TGTCGGCTTCCGGTC TGCTT GAC GAGCA TTTTCTGTTCTACGG Daro_0504 563878 - 564717 + | hypothetical protein TERM 527 565111 - 565138 + G 70 -12.1 -2.89602 | overlap 565108 565110 CGCCGGATTCCTGGC GGTATGCCTGA TTGACT TCGGGCATACC CTTTCCTATGCCGGA TERM 528 565268 - 565287 + G 70 -10 -3.54475 | opp_overlap 565261, overlap 565261 CTGCCAAAGCGCGAC TTGTCGGC TTGT GCCGGCAA TTGTCTGGTCGCCGG Daro_0505 564854 - 567712 + | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) Daro_0506 567736 - 568836 + | dihydroorotase Daro_0507 568848 - 569285 + | hypothetical protein Daro_0508 569282 - 570058 + | putative transmembrane protein Daro_0509 570318 - 570055 - | translation initiation factor 1 Daro_0510 571230 - 570349 - | transglutaminase-like TERM 529 570539 - 570500 - G 70 -12.8 -2.94099 | gap 1 GTGGCGTAGGACACA TCGGCCGCGTCGCGCCCGG TAC CCAGGCG-GACGAAGCCCA TCGGAATGGCGGTGC TERM 530 571095 - 571114 + g 75 -7.8 -4.21908 | GGATGACCGTCGGTA CCTGCTGG CTGA CCACCAGG TTTTCGCTGATGATG TERM 531 571311 - 571297 - R 81 -7 -4.731 | AAGCGAGCAATAAAA CGGCGC TTT GCGACG GGGAAATGATCAGTA TERM 532 571504 - 571469 - R 90 -9 -4.52703 | opp_overlap 571474 571500, overlap 571470 571471 571474 GAAAGTATTAGAAAA TTCAATCCCTTGCCGA TGTT TTGGCAAGGGATTGCG TGGTGCCTCAGGCGG TERM 533 571503 - 571470 - R 83 -12.5 -3.30538 | opp_overlap 571474 571500, overlap 571469 571471 571474 AAAGTATTAGAAAAT TCAATCCCTTGCCGA TGTT TTGGCAAGGGATTGC GTGGTGCCTCAGGCG TERM 534 571502 - 571471 - R 100 -16 -2.57238 | opp_overlap 571474 571500, overlap 571470 571469 571474 AAGTATTAGAAAATT CAATCCCTTGCCGA TGTT TTGGCAAGGGATTG CGTGGTGCCTCAGGC TERM 535 571474 - 571499 + r 87 -14.1 -3.10164 | opp_overlap 571474 571471 571470 571469 TATTAGAAAATTCAA TCCCTTGCCGA TGTT TTGGCAAGGGA TTGCGTGGTGCCTCA TERM 536 571499 - 571474 - R 82 -11.9 -3.42658 | opp_overlap 571474, overlap 571471 571470 571469 TATTAGAAAATTCAA TCCCTTGCCGA TGTT TTGGCAAGGGA TTGCGTGGTGCCTCA Daro_0511 573218 - 571512 - | 2-isopropylmalate synthase Daro_0512 573351 - 573827 + | AsnC family transcriptional regulator Daro_0513 573995 - 574657 + | hypothetical protein Daro_0514 574654 - 575319 + | thiopurine S-methyltransferase TERM 537 575728 - 575711 - T 70 -4 -4.6759 | opp_overlap 575711 575712, overlap 575712 AAGAGGGGAACAAAA CCCGGC TTATCG GCCGGC TTTCCAATATCGACA TERM 538 575758 - 575778 + T 100 -15.5 -3.17075 | opp_overlap 575758 AGCTGACAAGAAAAA GCCCTACAG ACA CTGTAGGGC TTGCGTTGCGGCAGG TERM 539 575778 - 575758 - T 100 -15.5 -5.19328 | opp_overlap 575758 AGCTGACAAGAAAAA GCCCTACAG ACA CTGTAGGGC TTGCGTTGCGGCAGG Daro_0515 576526 - 575807 - | hypothetical protein Daro_0516 578398 - 577223 - | hypothetical protein Daro_0517 579304 - 578399 - | AAA ATPase, central region:ATPase TERM 540 579462 - 579473 + G 78 -4.4 -4.80396 | ACATTGCTGTTGAGG GACA GAGG TGTC TTTTTAGATATTTTG Daro_0518 579404 - 580174 + | hypothetical protein Daro_0519 580277 - 581431 + | methyltransferase small Daro_0520 581496 - 581882 + | hypothetical protein Daro_0521 581892 - 582392 + | sigma-70 region 2:sigma-70 region 4 Daro_0522 582389 - 583183 + | hypothetical protein Daro_0523 583216 - 584214 + | catalase, N-terminal TERM 541 584253 - 584233 - T 100 -11.1 -5.27335 | opp_overlap 584233 TTTGCCAAATAAAAA GGCCGGC TGAGTTG GCCGGCC TTGCTTCATGACGGG TERM 542 584233 - 584253 + T 83 -12.5 -3.39895 | opp_overlap 584233 TTTGCCAAATAAAAA GGCCGGCTG AGT TGGCCGGCC TTGCTTCATGACGGG Daro_0524 585427 - 584279 - | extracellular ligand-binding receptor TERM 543 585544 - 585584 + r 70 -10.4 -3.22223 | gap 1, opp_overlap 585551, overlap 585548 585551 GTCGCCAGGTATCAA CATTCAAGCTGGCCGCCGC AATT GCGTTGGCCAGCT-GTGTG TTGCTGGTGCGCTTA TERM 544 585548 - 585582 + r 85 -12.9 -3.17229 | gap 1, opp_overlap 585551, overlap 585544 585551 CCAGGTATCAACATT CA-AGCTGGCCGCCGC AATT GCGTTGGCCAGCTGTG TGTTGCTGGTGCGCT TERM 545 585578 - 585551 - R 81 -12.6 -3.20348 | opp_overlap 585551 585548 585544 GGTATCAACATTCAA GCTGGCCGCCGC AATT GCGTTGGCCAGC TGTGTGTTGCTGGTG TERM 546 585551 - 585578 + r 95 -14.8 -3.13163 | opp_overlap 585551, overlap 585548 585544 GGTATCAACATTCAA GCTGGCCGCCGC AATT GCGTTGGCCAGC TGTGTGTTGCTGGTG Daro_0525 585848 - 585597 - | hypothetical protein TERM 547 586026 - 586001 - R 95 -10.5 -4.55128 | opp_overlap 586001 AGGTTGAAAGGAAAA GGACTTAGAGA TCGA CCCCTAAGTCC TTGATGATGCTGGTG Daro_0526 588094 - 586121 - | RNA polymerase sigma factor RpoD TERM 548 588001 - 588017 + g 71 -7.9 -4.10453 | overlap 588013 588013 GCGTCTCAGCCATCT GGCCCTG GAG CAGCGCC TTTTCGGCGGCTTTA Daro_0527 589877 - 588141 - | DNA primase TERM 549 588492 - 588515 + g 73 -8.8 -3.85817 | overlap 588506 GGGCAGCAGTGCTAT CGGCAGCTGG GCGG CCAGTTGCGG TTTGTGCAGCACGAT Daro_0528 590330 - 589884 - | hypothetical protein TERM 550 590360 - 590389 + r 86 -9.2 -4.36914 | opp_overlap 590362, overlap 590362 GAAATTCAAAGAAAA AAGCCGCCGGCT GTTGAA GGCTGGCGGCTC TTTTGTGCAGCGAAA TERM 551 590387 - 590362 - R 100 -8.9 -5.67283 | opp_overlap 590360 590362 AATTCAAAGAAAAAA GCCGCCGGC TGTTGAAG GCTGGCGGC TCTTTTGTGCAGCGA TERM 552 590362 - 590387 + r 88 -11.8 -3.79419 | opp_overlap 590362, overlap 590360 AATTCAAAGAAAAAA GCCGCCGGCT GTTGAA GGCTGGCGGC TCTTTTGTGCAGCGA rpsU 590626 - 590414 - | 30S ribosomal protein S21 Daro_0530 590723 - 591799 + | O-sialoglycoprotein endopeptidase TERM 553 591806 - 591834 + T 93 -8.7 -5.08011 | overlap 591829 ACGAAGTAGCAGGTT GCGCCGTTGCGTT GAT GGCGCGGCGCCGC TTTTTTCGGCGTTTT Daro_0531 592187 - 591909 - | hypothetical protein Daro_0532 592697 - 592197 - | thiol peroxidase (atypical 2-Cys peroxiredoxin) TERM 554 592558 - 592582 + g 72 -13.5 -2.62263 | ATGTTCAGGATCTTG CGCTTGCCGGC AAA GCTGGCCAGCG TGGTATCGGACAGAT TERM 555 592725 - 592755 + r 81 -9 -4.02021 | gap 1, opp_overlap 592725 TGATTGTGATTGAAA GCGGAGT-CCCCT TTGGAT GGGGGCGCTCCGC TTTGGTTCATTGATT TERM 556 593085 - 593070 - R 100 -11.8 -5.78622 | opp_overlap 593070 593081 GTAGGCGAAAAAAAA CGCCGG CGAA CCGGCG TTGTCGTTTTGATCA TERM 557 593070 - 593085 + r 85 -11.8 -3.70546 | opp_overlap 593070, overlap 593081 GTAGGCGAAAAAAAA CGCCGG CGAA CCGGCG TTGTCGTTTTGATCA Daro_0533 593711 - 593115 - | acyl-phosphate glycerol-3-phosphate acyltransferase TERM 558 593535 - 593558 + g 74 -5.8 -4.45068 | GCCTTTGAGCGCATC GCCGATCAGG GTGA CCAGGGCGGC TTTCTTGTTGCCGCT Daro_0534 593787 - 594137 + | dihydroneopterin aldolase Daro_0535 594720 - 594229 - | hypothetical protein Daro_0536 595363 - 594962 - | class I peptide chain release factor Daro_0537 596282 - 595374 - | tyrosine recombinase XerD subunit Daro_0538 596748 - 596260 - | methylated-DNA-(protein)-cysteine S-methyltransferase Daro_0539 597944 - 596769 - | Acyl-CoA dehydrogenase, C-terminal:Acyl-CoA dehydrogenase, central region:Acyl-CoA dehydrogenase, N-terminal TERM 559 597988 - 597961 - R 88 -11.2 -4.07568 | opp_overlap 597963, overlap 597962 TGGTTTCTCCGAAAA GCGCATCCCCGC CGGA GCGGGGATGCTT GTGTTGAGTCGACGG TERM 560 597987 - 597962 - R 93 -14.7 -3.04398 | opp_overlap 597963, overlap 597961 GGTTTCTCCGAAAAG CGCATCCCCGC CGGA GCGGGGATGCT TGTGTTGAGTCGACG TERM 561 597963 - 597986 + r 100 -18.2 -3.68988 | opp_overlap 597962 597961 GTTTCTCCGAAAAGC GCATCCCCGC CGGA GCGGGGATGC TTGTGTTGAGTCGAC proA 599267 - 598011 - | gamma-glutamyl phosphate reductase Daro_0541 599381 - 599623 + | hypothetical protein holA 600631 - 599624 - | DNA polymerase III subunit delta TERM 562 600489 - 600511 + g 70 -9.8 -3.53811 | overlap 600499 GTCAGCACCTCGCGT TCGCTGTAGC CCT GCTGCCGCGA TTTGGCGCGGATCGC Daro_0543 601315 - 600797 - | rare lipoprotein B Daro_0544 603955 - 601325 - | leucyl-tRNA synthetase TERM 563 604181 - 604200 + r 100 -4.2 -5.76949 | CCGGGTATCACGCTA GCGGCG CCCGGTCA CGCTGC TTTTTTTTGGCCGTA Daro_0545 604542 - 604192 - | hypothetical protein TERM 564 604726 - 604714 - H 72 -6.3 -4.34759 | opp_overlap 604714, overlap 604706 CACAATAGCAACAAA TTGGT CCG ACCAA TTTCCCGCGCTGCTT TERM 565 605812 - 605837 + G 78 -10.5 -3.96618 | CGAATTGGTCCGCGA TGGCAATTCGC CGAC GCAAATTGCCA TTCTTTACCGTTCGA TERM 566 606569 - 606593 + G 75 -7.9 -4.22949 | gap 1 CGGCTGATGTACGTC GCCG-TGACG CGGGCC CGTCAGCGGC TTTATGTGTCTTGTG TERM 567 606721 - 606733 + G 76 -10.5 -3.71527 | GGCAGAGTCGGCCAC GGCCG TGC CGGCC TTTGGCTCGTTCGGA Daro_0546 604793 - 606934 + | ATP-dependent DNA helicase UvrD TERM 568 606951 - 606981 + F 73 -11.8 -2.73721 | TCGTTCGGCTGCCCT GTCTTGACGTGCGC AGT GCGCATGGCCAGAC TGCTTCGGAATTGAT TERM 569 607105 - 607124 + G 78 -7 -4.69027 | overlap 607107 607112 GCCATTGCCGGTCTC GGCCGGCG CCGG CGCTGGGC TTTTTCGCTGGCTTT Daro_0547 607015 - 607773 + | hypothetical protein Daro_0548 607830 - 608804 + | zinc-containing alcohol dehydrogenase superfamily protein TERM 570 608945 - 608934 - g 90 -4.4 -5.40072 | overlap 608936 CGCCGCCGAAAAAAA TCGT CATC ACGA CCGGCGGCGAGAGCG Daro_0549 608801 - 610126 + | TRAP transporter solute receptor TAXI family protein TERM 571 610253 - 610278 + G 76 -13.3 -3.12351 | opp_overlap 610249 ACCGCCAGCAATCGT CGCGCGAATGG TTGG CCATTCGCCCG TTCGCTCTGCCGACC Daro_0550 610123 - 610749 + | putative partition-related protein Daro_0551 613851 - 610771 - | PAS TERM 572 611679 - 611699 + g 80 -3.2 -5.02074 | opp_overlap 611681, overlap 611681 TCGCATTGGCGACGA TATCGCTG ATGCG CAGCGGAA TTTTTTCCAGCGTCA TERM 573 612851 - 612841 - G 77 -3.2 -4.88736 | overlap 612814 612850 GAGCAGCCAGAAAAA GCTC ATC AAGC CGATCAGTGTGCCGA TERM 574 613143 - 613162 + g 72 -11.4 -3.34227 | opp_overlap 613143, overlap 613139 613137 TGAAGGTGAAGCCAA GGAGCGCT GTAC GGCGCTCC TTGATCGTTTCGTGC TERM 575 613796 - 613812 + g 73 -5 -4.58395 | TCGCTAAATACGGAG CGCGCC GGGGA GGGGCG TTTTTCGCAGATCGG Daro_0552 614851 - 613940 - | LysR family transcriptional regulator Daro_0553 614957 - 615664 + | Pirin, N-terminal TERM 576 616100 - 616140 + G 86 -13.4 -3.42056 | gap 1, opp_overlap 616091 616092 CACCAAGGCTGCCAC GCATGCCGACGTGAACCAT CTGG GTGGTTCG-GTCGGCCTGC TTGTCCGTTCGCCGT Daro_0554 615699 - 616253 + | flavodoxin/nitric oxide synthase TERM 577 616258 - 616294 + F 78 -12.3 -2.8632 | opp_overlap 616256, overlap 616246 TGCGCGGCTAAACCC GCTTTGCCTTGGGGG TGAGCGC CTCCCAAGGCAGTGC TATAGTGATCTATTA Daro_0555 616331 - 617131 + | response regulator receiver Daro_0556 617657 - 617109 - | hypothetical protein TERM 578 617244 - 617219 - G 71 -6.2 -4.33767 | gap 2, overlap 617220 617221 ACAAATTGACGAAAA TG-CC-GCTGGC GTAG GCCAGCAGGTCA ATGGCGAGTATTGTC Daro_0557 618781 - 617654 - | BNR repeat-containing glycosyl hydrolase TERM 579 618869 - 618886 + r 77 -9.8 -3.59087 | TGGCGTAGTCTATCA GCCGGC CGTGAC GCCGGC TTTCAAGGTGGTATT Daro_0558 619758 - 618970 - | enoyl-CoA hydratase TERM 580 620951 - 620925 - g 83 -4.9 -5.06414 | overlap 620927 CTGGGGCAAGAAAAA CGGCGTCCCGG TCGGG CCGGGCCGGGG TTCGGGTGCCGGTTC TERM 581 622044 - 622002 - g 78 -2.6 -5.07486 | overlap 622023 622034 GATGGGCAAGAAAAA GCCCGAGGAAATGGCC AAGCACCGGGA GACCATCGCCCAGGGC GCCAAGGAAAAAGGC Daro_0559 619858 - 623328 + | DNA polymerase III, alpha subunit Daro_0560 623325 - 623804 + | hypothetical protein TERM 582 623871 - 623821 - T 100 -26.5 -2.52464 | gap 1, opp_overlap 623838, overlap 623838 CTGGGCGGGAATGGA TCT-CCGGGCAATAAAAAGGCGCC TTGC GGCGCCTTTTTATTGCCCGGCAGC TGGCTGCCGGACTCG TERM 583 623853 - 623838 - T 100 -11.8 -5.06414 | opp_overlap 623838, overlap 623821 TCCGGGCAATAAAAA GGCGCC TTGC GGCGCC TTTTTATTGCCCGGC TERM 584 623838 - 623853 + T 100 -11.8 -5.06414 | opp_overlap 623838 623821 TCCGGGCAATAAAAA GGCGCC TTGC GGCGCC TTTTTATTGCCCGGC Daro_0561 625406 - 623889 - | methyl-accepting chemotaxis sensory transducer TERM 585 624893 - 624913 + g 84 -10.5 -4.26076 | opp_overlap 624905, overlap 624905 CGGAAATGTCGTTGA TCAGCGAGA CGA TCTCGTTGA TTTTCATCGAGCTGG TERM 586 625349 - 625369 + g 77 -3.3 -5.0133 | gap 1, overlap 625352 CGGAACCCTCGGCGA TTG-CCGC AATATC GCGGTCAA TTTTTTCGAGCGCTG Daro_0562 626381 - 625794 - | excisionase/Xis, DNA-binding TERM 587 626489 - 626449 - R 74 -11.2 -3.13405 | opp_overlap 626458 626484, overlap 626458 CAGGAAAATAACAAT GGAAAAAAACCCCGGCAG AAATG CGACCGGGGTTTTTCTTC TGGCCAGCCCACAGC TERM 588 626480 - 626458 - R 100 -8.3 -5.57054 | opp_overlap 626458, overlap 626449 AACAATGGAAAAAAA CCCCGGCAG AAATG CGACCGGGG TTTTTCTTCTGGCCA TERM 589 626458 - 626480 + r 93 -6.1 -5.18726 | opp_overlap 626458 626449 AACAATGGAAAAAAA CCCCGGCAG AAATG CGACCGGGG TTTTTCTTCTGGCCA Daro_0563 627191 - 626526 - | Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen TERM 590 627386 - 627423 + G 77 -8.4 -4.29845 | gap 1, overlap 627385 627391 627416 CTGGCGGTGCTACCG GCGCGTCGCGCTTTGCC TTTGT GGCAGGTCGCGATG-GC TTTTGCCTTGGCTTC TERM 591 627508 - 627531 + G 74 -11 -3.45839 | gap 1, opp_overlap 627507 627508, overlap 627507 627501 GCAGATGTTCGAAAG CCGGGCCTGGA ATG TCC-GGCTCGG TTCCTATTTCGCCCT TERM 592 628412 - 628432 + G 71 -9.7 -3.73936 | overlap 628380 628409 TATGGTTCAGTGCTC GGCAAGGCG CCG CGTTTTGCC TTCTTCATAGCCTTT Daro_0564 627326 - 628771 + | proton-translocating NADH-quinone oxidoreductase, chain M Daro_0565 628773 - 631811 + | hypothetical protein TERM 593 632456 - 632496 + G 74 -6.2 -4.5442 | gap 2, overlap 632457 GCCCTGTCCCTGGCG TCGAAGATCAGC--GTGGTC AAC GACCGCCTGCTGGTCATCGG TTTTGTCATTGCGGC TERM 594 632567 - 632588 + G 71 -5.7 -4.36914 | overlap 632568 632569 AGCAGGGCGCTCGAG GGGCCGACG CCCT CGTCGGCGA TTTTCTACGGCGCGG Daro_0566 631808 - 633334 + | NADH-ubiquinone oxidoreductase (complex I), chain 5/L, N-terminal:NADH/ubiquinone/plastoquinone (complex I) TERM 595 633579 - 633616 + G 71 -8.4 -4.00443 | CGAACGCTTCGTGCC GCTGGC-CTACCACGTCG CTGT CGACG-GGTTGAGCCTGC TCTTTTTGCTGGTGG Daro_0567 633334 - 634845 + | proton-translocating NADH-quinone oxidoreductase, chain M TERM 596 635216 - 635237 + G 78 -2.1 -5.1417 | overlap 635222 GAATCTGGGTATTTT CTGTGCGCT CGAT ACCGCGCTG TTTTTCGTTTTCTGG TERM 597 636261 - 636286 + G 71 -8.9 -3.794 | ATCGAGATTGTCCGA CCGGCTGCCGA GGTC TGGGCGGCTGG TTTGGTGCGTTGAGA Daro_0568 634842 - 636299 + | proton-translocating NADH-quinone oxidoreductase, chain M Daro_0569 636309 - 636605 + | hypothetical protein TERM 598 636600 - 636614 + T 70 -6.4 -4.1552 | CTGGCCAAACAGTTC GCTTGA AAA TCAGGC TTTCTTGACGAACTC Daro_0570 636947 - 636609 - | PhnA protein Daro_0571 638651 - 636960 - | sulphate anion transporter Daro_0572 638757 - 638951 + | helix-turn-helix protein, CopG Daro_0573 639274 - 638948 - | hypothetical protein TERM 599 639642 - 639690 + r 72 -7.39999 -3.90112 | gap 2, opp_overlap 639651 639656, overlap 639656 GGCGCTTTTGTTGCG CCGCAG-CAA-GGAAACGGCCCGC TAA GCGGGCCGTTTCCATTGGCATCAA TTTACTTGACGCGCA TERM 600 639679 - 639651 - R 100 -24.7 -3.14132 | opp_overlap 639642 639656, overlap 639656 GTTGCGCCGCAGCAA GGAAACGGCCCGC TAA GCGGGCCGTTTCC ATTGGCATCAATTTA TERM 601 639674 - 639656 - R 100 -17.4 -3.95584 | opp_overlap 639642 639656, overlap 639651 GCCGCAGCAAGGAAA CGGCCCGC TAA GCGGGCCG TTTCCATTGGCATCA TERM 602 639656 - 639674 + r 100 -17.4 -3.76125 | opp_overlap 639656 639651, overlap 639642 GCCGCAGCAAGGAAA CGGCCCGC TAA GCGGGCCG TTTCCATTGGCATCA Daro_0574 641782 - 639692 - | methionyl-tRNA synthetase TERM 603 642065 - 642081 + G 76 -8.7 -4.03234 | CCATCAGGTTGAGGT GTTTGCC GAG GGCAAGC TTTGTATCGAGGCCC Daro_0575 641979 - 642662 + | two component transcriptional regulator TERM 604 643440 - 643422 - g 72 -11.6 -3.28712 | opp_overlap 643421 643418 GTCGCTGGCCCAGAA GGTGCCGG TGA CCGGCGCC GTGATTGTCACCACG Daro_0576 642739 - 643830 + | hypothetical protein TERM 605 643851 - 643876 + F 100 -14.8 -5.37345 | opp_overlap 643851 643855 TGTGAAAACCACACA CAAAGGCGGG TAAAAT CCCGCCTTTG TTTTTTGTCGTTCGG TERM 606 643876 - 643851 - f 93 -14.8 -3.10533 | opp_overlap 643851, overlap 643855 TGTGAAAACCACACA CAAAGGCGGG TAAAAT CCCGCCTTTG TTTTTTGTCGTTCGG TERM 607 643872 - 643855 - f 85 -9.8 -4.19927 | opp_overlap 643851, overlap 643851 AAAACCACACACAAA GGCGGG TAAAAT CCCGCC TTTGTTTTTTGTCGT dcd 643902 - 644468 + | deoxycytidine triphosphate deaminase TERM 608 644497 - 644522 + F 83 -12.5 -3.37 | overlap 644509 CGAAAACGTCTTATT CTGTGACCCGC TGCG GCGGGTCGCCG CTTTTTAAGGATTCA TERM 609 644509 - 644523 + F 100 -12.8 -4.62471 | overlap 644497 ATTCTGTGACCCGCT GCGGCG GGT CGCCGC TTTTTAAGGATTCAC TERM 610 644891 - 644844 - g 73 -10 -3.57144 | gap 2, opp_overlap 644875 TCCTGCACGGCGAAA CGCGCACTTCGCGC--CACATC CCGAAC GACGTGCTGCGCGAACTGCACG GCTTCATCCACATGT TERM 611 645355 - 645368 + G 82 -9.5 -4.30576 | CGCCATCATGATGAC CGGGG CGAT CCCCG TTTTCCTGATGCCGA Daro_0578 644540 - 646768 + | ornithine decarboxylase Daro_0579 647269 - 646778 - | dihydrofolate reductase TERM 612 646806 - 646835 + g 100 -7.7 -5.72616 | opp_overlap 646808, overlap 646808 TAGGTCACAAAAGAA AACCCCGTTCCGC TTTG GCTGGGCGGGGTG TTTTTTTGTGTGACT TERM 613 646808 - 646833 + g 89 -10.3 -4.50122 | opp_overlap 646808, overlap 646806 GGTCACAAAAGAAAA CCCCGTTCCGC TTTG GCTGGGCGGGG TGTTTTTTTGTGTGA TERM 614 646833 - 646808 - G 90 -5.9 -5.18371 | opp_overlap 646808 646806 GGTCACAAAAGAAAA CCCCGTTCCGC TTTG GCTGGGCGGGG TGTTTTTTTGTGTGA Daro_0580 648735 - 647278 - | glycogen/starch synthase, ADP-glucose type TERM 615 647328 - 647362 + g 90 -14.3 -3.4252 | gap 1, opp_overlap 647350 CAACGTATTCGTTGG CGGCGTGCGTCCAGGA AAAA TCCCGG-CGCATGCCG TTCTGCTGGATGCGC TERM 616 647466 - 647489 + g 80 -14.6 -3.06815 | opp_overlap 647465 647464 CGTCGAGCACAAATC CGTTGGCCGA CTTG TCGGCCAGCG TGTCTTCACAGACAT Daro_0581 650318 - 648738 - | glucose-6-phosphate isomerase TERM 617 648966 - 648996 + g 72 -11.1 -3.30124 | TGAGGGCAGCAGCAG GGTGTTCGACGGC TGATT GCCGGGGAACACC TTGTAGGGAATCAGG TERM 618 650220 - 650210 - G 85 -2.4 -5.36441 | GGTGTAGAGAAAAAA GCTC GAA GCGC TGCGGATCGGTCGCG Daro_0582 652885 - 650315 - | Alpha-glucan phosphorylase TERM 619 652108 - 652146 + g 71 -5.9 -4.37092 | gap 1, overlap 652108 652106 CCAGGGCGCGGGTGC CGCCG-ACACCGAGCAGG ATTT CCTGTTCGATGCGCGTCG TTTTGTCGCCGCCGT Daro_0583 654855 - 652882 - | glycoside hydrolase family protein TERM 620 653950 - 653964 + g 81 -8.5 -4.65895 | opp_overlap 653936 653937, overlap 653949 653948 AGGCCGGTGCAGATC GCCGC GCCCG GCGGC TTTTTCGGTGGCGAG Daro_0584 656520 - 654865 - | glycoside hydrolase family protein TERM 621 656472 - 656437 - G 78 -14 -3.14344 | gap 1 GATGCTGTGCAGGAA CACCCAGGGCAGCAGGA ATT CCCCGCTGTCC-GGGTG CCGGTAGTCCGGCTG Daro_0585 657842 - 656520 - | glucose-1-phosphate adenylyltransferase TERM 622 657400 - 657382 - G 72 -11 -3.35597 | overlap 657380 TCCATCTTGTAAATA TGGTCGCC AGC GACGACCA GGATGTGATCCGGCT TERM 623 658795 - 658818 + G 76 -8.8 -4.06148 | ATTTCGATGGCCTGC GCGTCGACGC CGTG GCCTCGATGC TTTATCTCGACTATT Daro_0586 657897 - 659762 + | glycogen branching enzyme Daro_0587 660164 - 659823 - | hypothetical protein TERM 624 660242 - 660271 + r 73 -11.5 -2.62735 | overlap 660230 660229 660227 TATCGCCAGTCGCGA CGGTCATGACGGT CGTG ATCGTCATGGTCG TGGTGTCCGCGGTGT Daro_0588 660603 - 660226 - | hypothetical protein TERM 625 660653 - 660678 + r 70 -6 -4.17523 | TAGTGATGTTTATAC CGCGATCGGC ATGCTG GCCGAACGGG TTTTACGAATTGTTT Daro_0589 661475 - 660723 - | hypothetical protein Daro_0590 661484 - 662221 + | hypothetical protein Daro_0591 662250 - 662495 + | hypothetical protein Daro_0592 663437 - 662508 - | glucokinase thyA 664235 - 663441 - | thymidylate synthase TERM 626 664453 - 664441 - g 73 -9.1 -3.85698 | opp_overlap 664435 664449 CTGTTTGCCCAGAAA GCGGA TCA TCCGC TGGCGGATTTGCGCG Daro_0594 664396 - 665937 + | hypothetical protein TERM 627 665942 - 665980 + T 95 -14.6 -3.15579 | overlap 665931 665930 665933 TGCTCGGCTGATTAC GGCTGTTTGGCCCGAATC GCC GATTTGGGCCGGAAGGCC TTGATCACGGCTTCG mogA 666528 - 665938 - | molybdenum cofactor biosynthesis protein Daro_0596 667060 - 666521 - | hypothetical protein Daro_0597 667129 - 668472 + | microcin-processing peptidase 1 Daro_0598 668574 - 669662 + | twin-arginine translocation pathway signal TERM 628 669686 - 669702 + T 100 -15.1 -5.67063 | opp_overlap 669686 CGCTCAAACAAAAAA CCCGCGG ATT CCGCGGG TTTTTTTATGGTGGC TERM 629 669702 - 669686 - T 100 -15.1 -5.63517 | opp_overlap 669686 CGCTCAAACAAAAAA CCCGCGG ATT CCGCGGG TTTTTTTATGGTGGC Daro_0599 670254 - 669727 - | Ferritin and Dps TERM 630 669795 - 669820 + g 72 -11.1 -3.28712 | gap 1 TGCGCTGGGTCAGCA GGTCGGCGGTCG GTT CG-TCGCCGGCC TTGTCCACCAGCGGG TERM 631 670318 - 670303 - R 100 -11.8 -5.76949 | opp_overlap 670298 GATGGCGAAAAAAAA CGGGGC CGAA GCCCCG TTGAGATTGGTTTCA Daro_0600 671810 - 670347 - | TRAP dicarboxylate transporter, DctM subunit Daro_0601 672403 - 671810 - | tripartite ATP-independent periplasmic transporter DctQ TERM 632 671864 - 671875 + g 95 -7.2 -5.59534 | GGCCAGTTCTTCTTC GGCC GTCG GGCC TTTTTTCTTGTCGTT TERM 633 672306 - 672284 - G 81 -4.8 -4.89063 | gap 1 GTAGTCAAAAAGAAA GCGCACGAC CGCGTT GCCG-GCGC TGACAATGGTCATTG TERM 634 672659 - 672621 - g 86 -12.2 -3.90112 | opp_overlap 672628, overlap 672622 TCTGCCTTAACGAAA CCGGCCAGCGGCAGGCCG TGG CGGCCGGGCGCTGGTTGA AGCAGGCGGGCATTA TERM 635 672658 - 672622 - g 75 -13.5 -2.93853 | opp_overlap 672628, overlap 672621 CTGCCTTAACGAAAC CGGCCAGCGGCAGGCCG TGG CGGCCGGGCGCTGGTTG AAGCAGGCGGGCATT Daro_0602 672506 - 673162 + | phosphoglycerate mutase TERM 636 674263 - 674236 - g 78 -2.6 -5.07486 | gap 1 CACGGTCAACAAAAA CGGCATCC-CGAA CGA CCCGCAGAAGCCG TTTGTTACCTCCGGC Daro_0603 673202 - 674452 + | serine hydroxymethyltransferase Daro_0604 674566 - 675030 + | transcriptional regulator NrdR Daro_0605 675027 - 676130 + | 5-amino-6-(5-phosphoribosylamino)uracil reductase / diaminohydroxyphosphoribosylaminopyrimidine deaminase Daro_0606 676923 - 676162 - | UBA/THIF-type NAD/FAD binding fold:MoeZ/MoeB Daro_0607 677394 - 676993 - | hypothetical protein Daro_0608 678857 - 677415 - | peptidase S41A, C-terminal protease TERM 637 677525 - 677541 + g 75 -2.9 -4.98255 | overlap 677519 GCGGCAGTTCGTCTT CGGCG TCTTCCT TGCCG TTTTTGTCCTTGCCG Daro_0609 680272 - 678839 - | peptidase M23B TERM 638 678916 - 678906 - G 71 -8.2 -4.14056 | AGTTCAAAGTATAAA CCGG ATT CCGG ATTGCCCCCGCTGTT TERM 639 679095 - 679047 - G 82 -11.8 -3.86944 | gap 2, overlap 679039 TCGACAATCAGCAAA TTGCCGA-AGCCGCG-CATCCACT CCG AGAAGACGACGCGGCCGCCGGCAA TCGCCTTGACCTCGC TERM 640 679411 - 679469 + g 72 -12.9 -3.04398 | gap 1, overlap 679395 679428 TCGCAGCCTGGCGGG CCTCGGCGGCGCGTGCGGCTTCGGCTGC CTTG GCGGCCTGTGCCGCTTGGGCGGC-GAGG ATTTTCGACAGCCGG TERM 641 679428 - 679470 + g 71 -8.3 -4.07687 | gap 1, overlap 679395 679411 TCGGCGGCGCGTGCG GCTTCGGCTGCCTTGGCGGC CTGT GCCGCTTGGGCGGC-GAGGA TTTTCGACAGCCGGT TERM 642 679662 - 679684 + g 93 -5.5 -5.55769 | overlap 679665 679666 AGTTCGGCGCTGCGC TCCTTGGCG TCGGC CGCCAGTGA TTTTTTCTTGTCGAG TERM 643 680112 - 680137 + g 100 -4.5 -5.81412 | TGTTTTTCGGCAATT TCGGGCGCCGC GACG GCGGGGGCGGA TTTTTTTTCGCTCGC TERM 644 680211 - 680191 - G 74 -7.5 -4.4078 | GTGTGCCAAGGAAAA CGGCGGC TATCAGC GCCACCG TCAGCCTTTTGCCTG Daro_0610 680370 - 680666 + | ArsR family transcriptional regulator TERM 645 680900 - 680882 - g 78 -3 -5.08824 | opp_overlap 680887, overlap 680885 GCCGGATGCAAAAAA CATCCCGG TGG CCAAGCTG GCTGATCGTATTGGA Daro_0611 680670 - 681095 + | rhodanese-like protein Daro_0612 681092 - 681352 + | glutaredoxin GrxC Daro_0613 681384 - 681842 + | preprotein translocase subunit SecB Daro_0614 681844 - 682293 + | hypothetical protein TERM 646 683188 - 683202 + G 71 -9.2 -3.72324 | overlap 683177 AGATGCCGATCAGTG CGGCTG TTG CGGCCG TTCTTGATGGCCGTC gpsA 682290 - 683279 + | NAD(P)H-dependent glycerol-3-phosphate dehydrogenase Daro_0616 683740 - 683276 - | RNA methyltransferase TrmH, group 2 TERM 647 683363 - 683320 - G 78 -7.2 -4.58395 | opp_overlap 683331 GCCAGGCTTCAAAAA CAGTCACCGCCGCCGCATTC GACA GATTGAGGCTGCGTTGCCCG GGTAGCATCGGCAAA TERM 648 683391 - 683412 + g 73 -10.1 -3.59979 | opp_overlap 683406, overlap 683393 AAACGCAAGCATCGT TCCGGGCTG AATT CAGCCCGTA TTTCGGGTGGCAAGC TERM 649 683393 - 683410 + g 76 -12.7 -3.38046 | opp_overlap 683406, overlap 683391 ACGCAAGCATCGTTC CGGGCTG AATT CAGCCCG TATTTCGGGTGGCAA TERM 650 683475 - 683455 - G 90 -5.3 -5.20783 | overlap 683447 AGCCAAAGACAAAAA CGTCGTTTG CCT CAAGCGCCG TGGAGAACGGGCTGG Daro_0617 684529 - 683786 - | phosphoribosyltransferase TERM 651 684534 - 684554 + H 80 -5.3 -5.00846 | opp_overlap 684535, overlap 684535 684537 TGATAATTCATAATT ACCGATGCG CTT CGCATCTGA TTTTTATAGTATTTC TERM 652 684537 - 684551 + H 72 -10 -3.34705 | opp_overlap 684535, overlap 684535 684534 TAATTCATAATTACC GATGCG CTT CGCATC TGATTTTTATAGTAT Daro_0618 684586 - 685569 + | biotin synthase TERM 653 685594 - 685622 + G 76 -12.4 -3.31501 | overlap 685595 ATTTGAATTCGGGTT TCGTCGACCGGC AGCAA GTCGGTCGACGC TTCTCCCGCGTTGCT TERM 654 685595 - 685621 + G 78 -15.9 -2.58579 | overlap 685594 TTTGAATTCGGGTTT CGTCGACCGGC AGCAA GTCGGTCGACG CTTCTCCCGCGTTGC Daro_0619 685566 - 686459 + | biotin synthesis protein Daro_0620 687163 - 686498 - | hypothetical protein Daro_0621 688118 - 687165 - | putative sulfite oxidase subunit YedY Daro_0622 689062 - 688223 - | putative signal transduction protein TERM 655 689028 - 688995 - G 90 -15.3 -3.54543 | opp_overlap 688999 689001, overlap 688996 688999 ATGCATGTGGGGAAA TTGACATCGCCCGAG AGAT CTCGGGCGATGTCTT CAAGAATGCGAAAAT TERM 656 689027 - 688996 - G 88 -18.8 -2.72511 | opp_overlap 688999 689001, overlap 688995 688999 TGCATGTGGGGAAAT TGACATCGCCCGAG AGAT CTCGGGCGATGTCT TCAAGAATGCGAAAA TERM 657 689024 - 688999 - G 88 -19.1 -2.64274 | opp_overlap 688999 689001, overlap 688996 688995 ATGTGGGGAAATTGA CATCGCCCGAG AGAT CTCGGGCGATG TCTTCAAGAATGCGA TERM 658 688999 - 689024 + g 90 -19.1 -3.03124 | opp_overlap 688999 688996 688995, overlap 689001 ATGTGGGGAAATTGA CATCGCCCGAG AGAT CTCGGGCGATG TCTTCAAGAATGCGA TERM 659 689001 - 689022 + g 83 -15.9 -3.07344 | opp_overlap 688999 688996 688995, overlap 688999 GTGGGGAAATTGACA TCGCCCGAG AGAT CTCGGGCGA TGTCTTCAAGAATGC Daro_0623 689495 - 689064 - | CBS TERM 660 689594 - 689579 - R 100 -10.4 -5.98675 | opp_overlap 689579 CAGAAAAACAAAAAA GGCAGC CGAA GCTGCC TTTTCTCTGCGGGAG TERM 661 689579 - 689594 + r 93 -10.4 -4.52589 | opp_overlap 689579 CAGAAAAACAAAAAA GGCAGC CGAA GCTGCC TTTTCTCTGCGGGAG Daro_0624 690251 - 689616 - | cytochrome c, class I TERM 662 689901 - 689913 + g 70 -4.7 -4.50058 | overlap 689900 CTGCTTTTCATCCTT GGCGG CAG CCGGC TTTTGCTTCTGGCTG TERM 663 691011 - 690981 - g 100 -11.1 -5.00611 | overlap 690982 690995 CAGAAAGAAAACAAA GGGCCCCCGGA TAAGGGGAG TCCGGGGGCCA AAATGCCCTAACGTT TERM 664 691010 - 690982 - g 90 -14.6 -3.57927 | overlap 690981 690995 AGAAAGAAAACAAAG GGCCCCCGGA TAAGGGGAG TCCGGGGGCC AAAATGCCCTAACGT Daro_0625 690360 - 691022 + | cell division checkpoint GTPase YihA TERM 665 691035 - 691015 - f 77 -8.3 -4.07568 | overlap 690995 GTCCGGGGGCCAAAA TGCCCTAAC GTT GTCAAGGCA CCCGCTCAGGGAGGT Daro_0626 691157 - 692161 + | delta-aminolevulinic acid dehydratase TERM 666 692178 - 692207 + T 100 -15.1 -4.07568 | opp_overlap 692184, overlap 692180 692184 TGGCGTTGCGGTACG CATAAAGGGCGGC CTTG GCCGCCCTTTATC TTTTCAGGCGCCCGG TERM 667 692180 - 692205 + T 100 -17.7 -3.63744 | opp_overlap 692184, overlap 692178 692184 GCGTTGCGGTACGCA TAAAGGGCGGC CTTG GCCGCCCTTTA TCTTTTCAGGCGCCC TERM 668 692184 - 692201 + T 100 -14.1 -4.45168 | opp_overlap 692184, overlap 692180 692178 TGCGGTACGCATAAA GGGCGGC CTTG GCCGCCC TTTATCTTTTCAGGC TERM 669 692201 - 692184 - T 100 -14.1 -3.91897 | opp_overlap 692184 692180 692178 TGCGGTACGCATAAA GGGCGGC CTTG GCCGCCC TTTATCTTTTCAGGC slmA 692819 - 692211 - | nucleoid occlusion protein TERM 670 692789 - 692807 + g 78 -2.2 -5.03314 | overlap 692790 GCGTCTGCAGGATTT GCAGGCGG CGT TCGCCCGG TTTTTTCGCCATGAA Daro_0628 693496 - 692858 - | HAD family pyrimidine 5-nucleotidase TERM 671 693517 - 693545 + r 81 -12.6 -3.21416 | gap 1, opp_overlap 693524, overlap 693524 TACTCTAAGTGCAAT TGAAAAAGCCCGC AGTT GCGGGC-TTTTCA TTCCTGGTGCCGATG TERM 672 693524 - 693539 + r 100 -11.8 -4.46615 | opp_overlap 693524, overlap 693517 AGTGCAATTGAAAAA GCCCGC AGTT GCGGGC TTTTCATTCCTGGTG TERM 673 693539 - 693524 - R 100 -11.8 -4.74504 | opp_overlap 693524 693517 AGTGCAATTGAAAAA GCCCGC AGTT GCGGGC TTTTCATTCCTGGTG Daro_0629 694448 - 693561 - | acetylglutamate kinase TERM 674 694492 - 694511 + r 76 -10.7 -3.27774 | opp_overlap 694492 TTGTACAAAGAAAAA GGCCGGA ACGGGG TCCGGCC TTGATGCTTGGAATC TERM 675 694511 - 694492 - R 100 -10.7 -5.38054 | opp_overlap 694492 TTGTACAAAGAAAAA GGCCGGA ACGGGG TCCGGCC TTGATGCTTGGAATC Daro_0630 694950 - 694534 - | heat shock protein Hsp20 ntpA 695463 - 695011 - | dATP pyrophosphohydrolase Daro_0632 695888 - 695460 - | hypothetical protein Daro_0633 696258 - 695899 - | guanine-specific ribonuclease N1 and T1 TERM 676 696245 - 696205 - G 79 -9.1 -4.24432 | gap 1 AAAGCTAAAAGCAAA TGCGCTTCC-GATCGCCA ACCAGG CAACGACCAGGAAGCGCA GAAAGATCAGCATGC aspS 698064 - 696265 - | aspartyl-tRNA synthetase TERM 677 696483 - 696461 - G 73 -10.4 -3.57792 | opp_overlap 696475 CGATCGAGGCCGAAA GCCAGGCCGC CGT GCGGCGGGGC GCCGTACTTCAGGGC TERM 678 696897 - 696885 - G 70 -3.3 -4.63218 | overlap 696886 696888 696889 CGGCGCCGAAGAAAA TCAGG TCG CCGGA CTGGGCGCCAGTGCG Daro_0635 698711 - 698082 - | hypothetical protein Daro_0636 698947 - 698696 - | hypothetical protein Daro_0637 699872 - 699018 - | type 4 prepilin peptidase 1. Aspartic peptidase. MEROPS family A24A Daro_0638 701098 - 699872 - | type II secretion system protein Daro_0639 702829 - 701114 - | type II secretion system protein E TERM 679 701141 - 701167 + g 100 -12.4 -4.30576 | overlap 701129 GGTGCTGAGCACCTC GTCAAGCGAGGT CAC ACCTTGTTTGAC TTTTAATAGTCCGGA Daro_0640 704181 - 702910 - | CBS:protein of unknown function DUF21:transporter-associated region Daro_0641 705030 - 704191 - | cytochrome c assembly protein Daro_0642 705060 - 706427 + | signal recognition particle subunit FFH/SRP54 (srp54) TERM 680 706436 - 706456 + T 100 -11.8 -5.14563 | ACGCTGATTAGCGCG CGGCCTGC GCCAA GCGGGCCG TTTTTTCGTAGCCCC Daro_0643 707039 - 706428 - | lytic transglycosylase, catalytic Daro_0644 708757 - 707027 - | prolyl-tRNA synthetase TERM 681 709378 - 709367 - g 84 -3.6 -5.24129 | CCGCGCCATAAAAAA GAGC AGGA GCCC TTTTCCGATGTTGTA Daro_0645 708869 - 709417 + | dinucleoside polyphosphate hydrolase Daro_0646 709420 - 709941 + | putative lipoprotein Daro_0647 709944 - 710567 + | putative ubiquinone biosynthesis protein Daro_0648 711024 - 710596 - | OsmC-like protein TERM 682 711408 - 711390 - H 100 -16 -3.05384 | opp_overlap 711390 TTGGTGTGGATTTAA CGCGGCTC AGC GAGCCGCG TTTTTTTTGTCTAGT TERM 683 711390 - 711408 + H 100 -16 -6.0427 | opp_overlap 711390 TTGGTGTGGATTTAA CGCGGCTC AGC GAGCCGCG TTTTTTTTGTCTAGT TERM 684 711725 - 711710 - g 71 -5.4 -4.4017 | CCAATGTGGACAAAA TCACCG TAAC CGGTAA CAAGGCCGAAGATAA rplM 711526 - 711954 + | 50S ribosomal protein L13 TERM 685 712249 - 712268 + G 73 -4.3 -4.71426 | gap 1 GATGCTGCTCTGAAG CCTGCGCT CTCCA AG-GCAGG TTTTGTTACTCGCGA Daro_0650 711964 - 712356 + | SSU ribosomal protein S9P TERM 686 712370 - 712400 + F 100 -13.5 -5.08824 | gap 1, opp_overlap 712378, overlap 712378 AATTCGCTTCGAGCG CAGAAAAAGCCGCC TTTT GGCGGCTTTTT-TG TTTTTTGCGTGCGCG TERM 687 712378 - 712393 + F 100 -11.8 -6.04324 | opp_overlap 712378, overlap 712370 TCGAGCGCAGAAAAA GCCGCC TTTT GGCGGC TTTTTTGTTTTTTGC TERM 688 712393 - 712378 - f 100 -11.8 -4.85599 | opp_overlap 712370 712378 TCGAGCGCAGAAAAA GCCGCC TTTT GGCGGC TTTTTTGTTTTTTGC TERM 689 713222 - 713243 + G 74 -3.7 -4.74103 | CAGTTGGAAATCAAG CACTTTCTT CGCC GGGAAGGTG TTTTTGAGTTGCCGG Daro_0651 712604 - 713338 + | hypothetical protein Daro_0652 713348 - 713749 + | hypothetical protein TERM 690 713748 - 713732 - f 70 -5.7 -4.4078 | overlap 713733 713734 TCGGTGGAACTAAAA CTGGCCG CGT CGGCCTA ATGCAATTGACCGGG Daro_0653 713813 - 714163 + | iron-sulfur cluster insertion protein ErpA TERM 691 714189 - 714202 + F 100 -9.5 -5.40474 | opp_overlap 714189 TCTTTAGTAAAAAAA GCGGC GAAA GCCGC TTTTTTTACGCCCAT TERM 692 714202 - 714189 - f 100 -9.5 -5.52384 | opp_overlap 714189 TCTTTAGTAAAAAAA GCGGC GAAA GCCGC TTTTTTTACGCCCAT TERM 693 714290 - 714306 + F 74 -8.7 -3.97368 | ATCGAATGAGCGACT TGGTGCA GTT TGCGCCA TTTGTGGGTTGAGGA TERM 694 716527 - 716515 - f 72 -7.7 -3.86194 | AATGGTCGGTACAAA GGGTT GCC AACCC GCGAGGGGGAGCTAA TERM 695 717031 - 717062 + F 81 -9.6 -4.09864 | opp_overlap 717031 717032, overlap 717032 TATCCTCCACCAAAA CCCAAAGATAAGCA GTGG TGTTTATCTTTGGC TTTTGAGCAATCAAT TERM 696 717062 - 717031 - f 76 -7.4 -4.2558 | opp_overlap 717031 717032, overlap 717032 TATCCTCCACCAAAA CCCAAAGATAAGCA GTGG TGTTTATCTTTGGC TTTTGAGCAATCAAT TERM 697 717061 - 717032 - f 74 -10.9 -3.15027 | opp_overlap 717031 717032, overlap 717031 ATCCTCCACCAAAAC CCAAAGATAAGCA GTGG TGTTTATCTTTGG CTTTTGAGCAATCAA TERM 698 717032 - 717061 + F 83 -13.1 -3.05597 | opp_overlap 717032 717031, overlap 717031 ATCCTCCACCAAAAC CCAAAGATAAGCA GTGG TGTTTATCTTTGG CTTTTGAGCAATCAA TERM 699 717731 - 717720 - f 72 -7.2 -4.2354 | GAAAGGCGAAAAGAA CCCC GGGA GGGG AGTGAAATAGAACCT TERM 700 720341 - 720374 + F 100 -24.1 -2.90615 | opp_overlap 720345, overlap 720345 GCCAGACTCCCCATT CAAACCCCCGTTAGC ATAA GCTAACGGGGGTTTG TCGTTTACCACCAAT TERM 701 720345 - 720370 + F 100 -19.1 -4.13654 | opp_overlap 720345, overlap 720341 GACTCCCCATTCAAA CCCCCGTTAGC ATAA GCTAACGGGGG TTTGTCGTTTACCAC TERM 702 720370 - 720345 - f 100 -19.1 -3.6502 | opp_overlap 720345 720341 GACTCCCCATTCAAA CCCCCGTTAGC ATAA GCTAACGGGGG TTTGTCGTTTACCAC TERM 703 720411 - 720395 - f 85 -8.7 -4.46615 | TACCACCAATCAAAA CCACTCA CCA TGAGCGG ACCAGATTGGCGGAA TERM 704 721266 - 721246 - g 85 -4 -5.36441 | GTTGTAGACAAAAAA GCCAGT GCTATCTTT ACTGGC GACATGTTCGGCCTG Daro_0655 720727 - 721683 + | Beta-lactamase-like Daro_0656 722578 - 721811 - | UBA/THIF-type NAD/FAD binding fold Daro_0657 723681 - 722578 - | metal-dependent phosphohydrolase TERM 705 723135 - 723145 + g 81 -4.6 -4.91511 | GGAAAAACTGAAGAT CGCT ACT GGCG TTTTTCTGATCGGAT TERM 706 724242 - 724258 + G 75 -7.9 -4.20696 | CGATGCGACCAATGT CATCGCC GAG GGCGAGG TTTTGCAGTTGATGA Daro_0658 723763 - 724788 + | polyprenyl synthetase TERM 707 724930 - 724899 - f 95 -7.2 -5.27938 | opp_overlap 724906 ACCTGCAAAGAAAAA GCACTTAGCCATCC CACG GGATGGCTTTTTGC TTTTTGCCATTTAAT TERM 708 724906 - 724923 + F 100 -11.3 -5.18355 | opp_overlap 724899 AAGAAAAAGCACTTA GCCATCC CACG GGATGGC TTTTTGCTTTTTGCC TERM 709 725949 - 725961 + G 70 -4.8 -4.5123 | GCCCCGTGATATGGC CGAC ATTCA GTCG TTTATTTGGTCCGTT Daro_0659 725128 - 725988 + | hypothetical protein Daro_0660 726362 - 726592 + | hypothetical protein TERM 710 726771 - 726790 + GF 71 -6.4 -4.25104 | gap 1, overlap 726772 726773 GACGGGGACTTACAT GG-CGGCGA CAA TCGCCGGTC TTTTGCTGGCAACGC TERM 711 726773 - 726787 + GF 73 -11.4 -2.83504 | overlap 726772 726771 CGGGGACTTACATGG CGGCGA CAA TCGCCG GTCTTTTGCTGGCAA Daro_0661 726592 - 728205 + | signal transduction histidine kinase Daro_0662 728163 - 729518 + | helix-turn-helix, Fis-type Daro_0663 729518 - 730084 + | N-acetyl-anhydromuranmyl-L-alanine amidase Daro_0664 731221 - 730061 - | hypothetical protein TERM 712 730282 - 730268 - G 82 -12.8 -3.69083 | GCAATACAGATAGAA CGCCCC TTC GGGGCG GGCGGTGATGCGGAA TERM 713 731260 - 731241 - R 100 -15 -4.54727 | TTCTCCAAAGTAAAA CGGCCACC CTGA GGTGGCCG TCGATCATAGCAAGA Daro_0665 733127 - 731283 - | phosphoenolpyruvate carboxykinase TERM 714 732179 - 732169 - G 75 -8.2 -4.16842 | opp_overlap 732168 GCGACGCCGAAGAAA CCGG CTT CCGG GTTGATGGCGTAGAA TERM 715 733045 - 733073 + g 83 -5.1 -5.03145 | TGGATACGGTCCGGC TGGGTCAGCGCGG CGA TCTCGGCGACCCA TTTTTTCAGGCCTTC TERM 716 734980 - 734946 - g 71 -7.6 -4.0641 | opp_overlap 734972, overlap 734947 CCTGATGGAGAGAAA GGGCGTCTCGCCGGAC TAT GCCCGGCGCGAAGTGC GTCGCCGCAACACGC Daro_0666 733372 - 735651 + | malic enzyme TERM 717 735860 - 735846 - g 74 -3.5 -4.77036 | TGCGACGACGAAAAA GTCCG AGCAA CAGAC TGCAAAGAAAGTAGC TERM 718 736783 - 736754 - g 76 -13.7 -3.09671 | gap 1 ACTCGAATGGCAAGA TGACCCGGGTTGGC GAT GCCAA-CCGGATCA AGCGCTGGATGGAAA Daro_0667 735757 - 736836 + | murein-DD-endopeptidase TERM 719 736857 - 736881 + T 100 -10 -5.05782 | opp_overlap 736861, overlap 736861 CGAACGTAGCAAACT CAAAGGCCGC CGCGA GCGGCCTTTA TTTTTTGGGGTCGGT TERM 720 736861 - 736877 + T 100 -10.8 -5.05153 | opp_overlap 736861, overlap 736857 CGTAGCAAACTCAAA GGCCGC CGCGA GCGGCC TTTATTTTTTGGGGT TERM 721 736877 - 736861 - T 90 -11.5 -3.87149 | opp_overlap 736861 736857 CGTAGCAAACTCAAA GGCCGCC GCG AGCGGCC TTTATTTTTTGGGGT Daro_0668 737607 - 736879 - | regulatory proteins, IclR TERM 722 737159 - 737181 + g 70 -3.4 -4.59109 | overlap 737168 TTACCGGGCAGGCCG GTGCGC TTGGCGTAGTC GCGCAC TTTTTGCGGACTCTC Daro_0669 737739 - 738470 + | hypothetical protein Daro_0670 738470 - 739912 + | 4Fe-4S ferredoxin, iron-sulfur binding Daro_0671 739915 - 740613 + | aldehyde dehydrogenase Daro_0672 740613 - 741569 + | D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region:D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding TERM 723 741965 - 741996 + G 73 -13.7 -2.78384 | gap 1, opp_overlap 741981 GGCACCCTGATGCTG CTGTCCG-GGCCGG AAACG CCGGCCACGGTCAG TCTGCTGCCGGAGAC Daro_0673 741566 - 742207 + | hypothetical protein Daro_0674 743838 - 742204 - | PAS TERM 724 742640 - 742615 - G 75 -8.2 -4.21194 | gap 1, overlap 742616 GGCGACCACCGAAAA GCCGCGGCCGG CATCC CCGG-CGCGGG CGGCCTCGATGGCGG TERM 725 743157 - 743185 + g 89 -10.2 -4.56597 | TGGTCAGCATCTTGT CGAGCGCGGCGA AGGTA TCGCCGAGGTCG TTTTTCAGGCGCGGC Daro_0675 746608 - 743831 - | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) TERM 726 745312 - 745322 + g 100 -2.4 -5.78622 | ACAGCCATTTGGGGT AGGC CTC GCCA TTTTTTTTCCGGTCC TERM 727 745422 - 745396 - G 77 -7.9 -4.38154 | opp_overlap 745386, overlap 745397 ACATGTCGGAGAAAA CCTCGGTCGGC GTCGT ACCGGCCGAGA GTATGCGCGGATTCT Daro_0676 746623 - 746838 + | RNA-binding S4 Daro_0677 747399 - 746842 - | phospholipid/glycerol acyltransferase Daro_0678 748064 - 747420 - | phosphate transport regulator-like protein Daro_0679 749110 - 748061 - | phosphate transporter TERM 728 749170 - 749185 + H 76 -7.5 -4.17089 | opp_overlap 749169 TTTGGGCCAGTATAT CGCCG AATTGC CGGCG TTTTGAGGGTTTGCG TERM 729 750208 - 750223 + G 80 -3.9 -5.13354 | TTGGCCATCGGTGTT GCGGC CTGGTT GCTGC TTTGTTTTTTCTGGG Daro_0680 749263 - 750303 + | C4-dicarboxylate transporter/malic acid transport protein TERM 730 750341 - 750319 - T 100 -10.5 -5.60993 | overlap 750320 CGGTGTACAAAAAAA TGGCGGGAG ACCAG CTCCCGCCC AAGCGGAGTCTGCCT TERM 731 750340 - 750320 - T 100 -14 -3.95873 | overlap 750319 GGTGTACAAAAAAAT GGCGGGAG ACCAG CTCCCGCC CAAGCGGAGTCTGCC Daro_0681 751776 - 750361 - | 4Fe-4S ferredoxin, iron-sulfur binding TERM 732 751952 - 751968 + H 74 -10.1 -3.4678 | TGTGCAGGAGAGGTG TCGCCGG TTT CCGGTGA TTCTCATATCAAGAT Daro_0682 752075 - 753439 + | helix-turn-helix, Fis-type TERM 733 753608 - 753589 - T 86 -12.2 -3.54424 | CGTCAGCTCCGGAAA GCTGCCAT CCGA ATGGCAGC TGCACTCGCAAGCTG Daro_0683 754941 - 753658 - | Na+/H+ antiporter Daro_0684 755635 - 754988 - | pentapeptide repeat-containing protein TERM 734 755461 - 755480 + g 81 -7.8 -4.59773 | overlap 755476 TGGCATTGCGGAAGT TGCCGCCA CTGA TGTCGGCA TTTTTCCAAATGACG Daro_0685 755852 - 757459 + | sensor histidine kinase Daro_0686 757449 - 758060 + | two component LuxR family transcriptional regulator Daro_0687 758128 - 758538 + | ArsR family transcriptional regulator TERM 735 759731 - 759750 + G 85 -3.5 -5.40072 | overlap 759723 759722 GTTGCTGCGGGGGGG CTCGGCT TTCTTT GGCTGAG TTTTTTTCAGCAAAA Daro_0688 758609 - 759778 + | Na+/H+ antiporter NhaA Daro_0689 760194 - 759841 - | hypothetical protein TERM 736 759877 - 759896 + g 75 -8.5 -4.14739 | opp_overlap 759889 GTCCGCAACGGGCGT GCGCCGT GCAAAG GCGGCGC TTTTCCAGTGGGTGA TERM 737 761399 - 761389 - g 70 -3.2 -4.63218 | GGCCGTCGAAGAAAA GCAT TCG ACGC ATGGTGGAGAAAATC Daro_0690 760413 - 761702 + | RNA-directed DNA polymerase (Reverse transcriptase) TERM 738 762597 - 762576 - g 72 -3 -4.84017 | gap 1, overlap 762581 762583 AAGCCCGTAGAAAAA GTAAAGGGC ATGCA GCCC-CTAC CCAAGGGCAGCTTGA TERM 739 762593 - 762581 - g 71 -6.2 -4.38116 | overlap 762576 762583 CGTAGAAAAAGTAAA GGGC ATGCA GCCC CTACCCAAGGGCAGC Daro_0691 762041 - 762622 + | hypothetical protein Daro_0692 763148 - 762834 - | cytochrome c, class I Daro_0693 763828 - 763274 - | OmpA/MotB Daro_0694 764336 - 763821 - | regulatory protein, MarR TERM 740 764401 - 764424 + H 74 -3.1 -4.95487 | gap 1, opp_overlap 764396, overlap 764392 764401 GCAGAGGAGACGCGA GG-CGCGAGT CTGTT GCTCGTGACC TTTTCTATTTGTTTT Daro_0695 764469 - 764966 + | OmpA/MotB TERM 741 764993 - 765016 + F 91 -8 -5.09895 | overlap 764995 AGCTTGAGCGACTCT TTGGGCGACC TTCG GGCCGCCCCA TTTTTTCAGTAAATC TERM 742 764995 - 765014 + F 70 -10.6 -2.78405 | overlap 764993 CTTGAGCGACTCTTT GGGCGACC TTCG GGCCGCCC CATTTTTTCAGTAAA Daro_0696 765041 - 765631 + | hypothetical protein TERM 743 766217 - 766234 + G 71 -5.5 -4.30995 | overlap 766218 AAGTGAGAACCAGTG GCGTGCT GTTG AGCACGA TTATTTTCTCGGGCA TERM 744 766626 - 766636 + G 78 -6.8 -4.62471 | CTATTACTCGGGTAT TCCC GGC GGGA TTTTTGCCCCTTCAC Daro_0697 765628 - 766947 + | Cl- channel, voltage gated TERM 745 767026 - 767072 + F 74 -10.5 -3.25823 | gap 1, opp_overlap 767034, overlap 767027 GATCCAATTTTCCGC TGTACAGATTCCATATTTCAAT TATT ATTGAAATATGGAATC-GAACC TTGCTGTCGCCGCGC TERM 746 767027 - 767071 + F 84 -14 -2.55351 | gap 1, opp_overlap 767034, overlap 767026 ATCCAATTTTCCGCT GTACAGATTCCATATTTCAAT TATT ATTGAAATATGGAATC-GAAC CTTGCTGTCGCCGCG TERM 747 767065 - 767034 - f 90 -14.8 -2.87132 | opp_overlap 767027 767026 TTTCCGCTGTACAGA TTCCATATTTCAAT TATT ATTGAAATATGGAA TCGAACCTTGCTGTC TERM 748 767247 - 767269 + G 100 -8.3 -5.20735 | overlap 767237 TTGCGGCCGGTTTGG CCGCCTCGC GGCAG GAGGGGCGG TTTGTTTTTTATTCG Daro_0698 767060 - 767395 + | ArsR family transcriptional regulator TERM 749 767790 - 767801 + G 89 -7.2 -5.09426 | opp_overlap 767790, overlap 767789 TGGTGAACTGGAAAA GCGG ATCG CCGC TTTTTTGCAGTTGCC TERM 750 767801 - 767790 - g 71 -7.2 -4.19238 | opp_overlap 767789 767790 TGGTGAACTGGAAAA GCGG ATCG CCGC TTTTTTGCAGTTGCC Daro_0699 767392 - 767886 + | low molecular weight phosphotyrosine protein phosphatase Daro_0700 767883 - 768950 + | bile acid:sodium symporter TERM 751 770331 - 770353 + G 70 -4 -4.6759 | GGCTCCTCGCTCTGG CTGCTGGCAA TGC TGGTCGGCGG TTTTGTTGCCCTGTT Daro_0701 768981 - 770420 + | permease Daro_0702 770434 - 770667 + | redox-active disulfide protein 2 TERM 752 770694 - 770662 - T 82 -12 -3.53012 | gap 1 GCCGCCTGGCTCAAA GCGTAGCAAGGGCCG TGGC CGGCCCTTGCG-CAC CGGTCAGGCCGAGAC Daro_0703 771384 - 770698 - | calcium-binding EF-hand TERM 753 771560 - 771546 - H 93 -8.5 -5.00616 | opp_overlap 771554 771555 TTGTCTGTCAAAAAA CCGGC CTTTT GCCGG CGAAAGTTGGCAGTT TERM 754 771554 - 771573 + H 84 -4.2 -5.1861 | opp_overlap 771546, overlap 771555 CAAAAAACCGGCCTT TTGCCGGC GAAA GTTGGCAG TTTTTTGCTGGTGGC TERM 755 771580 - 771604 + H 83 -12.1 -3.37017 | overlap 771578 AGTTGGCAGTTTTTT GCTGGTGGCAA TAT TTGCCGCCTGC TTAATGTTGCCGCTT Daro_0704 771712 - 772392 + | response regulator receiver:transcriptional regulatory protein, C-terminal Daro_0705 772394 - 773539 + | sensor histidine kinase TERM 756 774831 - 774819 - g 77 -3.4 -4.88736 | GACCATCGAGAAAAA GAAC CTGGC GTTC GATCTTCGTGAAAAA Daro_0706 773782 - 775692 + | Type I secretion outer membrane protein, TolC TERM 757 775739 - 775760 + T 100 -14.5 -4.77036 | opp_overlap 775739 CTGGACAAATAAAAA GGCCATGCT ACCG AGCATGGCC TTTTTGCTGCTAGCC TERM 758 775760 - 775739 - T 100 -14.5 -5.38054 | opp_overlap 775739 CTGGACAAATAAAAA GGCCATGCT ACCG AGCATGGCC TTTTTGCTGCTAGCC Daro_0707 776409 - 775780 - | PBP family phospholipid-binding protein TERM 759 776203 - 776183 - G 73 -8.9 -3.91984 | opp_overlap 776183, overlap 776180 776186 ACACGCGGCAAAGAA GCAGGGACG CTT CGCCCCTCC TGATTAACGTCGTCT Daro_0708 777975 - 776425 - | virulence factor MVIN-like TERM 760 777409 - 777399 - G 72 -2.4 -4.82901 | overlap 777384 GGCCGCCGAGAAAAA CGGC CCA GCCC AGTGCCAATACCGGC TERM 761 777887 - 777857 - G 95 -6.1 -5.63504 | gap 1 AAGGCGACAAAAAAA GCGTCTGTGGC-CA GTCC TGCGCCAAAGGCGC GAGCAATGACAAAAT TERM 762 778176 - 778192 + r 78 -8.7 -4.18488 | GCTAGCCCGTCTCCG CTGGTGA GAC TCGCCAG TTTGTTGAGGTCGGT TERM 763 778369 - 778385 + r 95 -9.4 -5.01811 | CACCATATTGATTTA GCCCAC CTCGT GTGGGC TTTTTCATTTACTCA Daro_0709 779691 - 778723 - | response regulator receiver modulated diguanylate cyclase TERM 764 780252 - 780235 - g 74 -3.3 -4.77036 | gap 1, overlap 780236 780237 CGCGATGATGAAAAA CGCGCCTG ATG CCGGCG-G TGAGCGGGGCGTGAT Daro_0710 779840 - 780607 + | NAD-dependent epimerase/dehydratase:Short-chain dehydrogenase/reductase SDR TERM 765 780652 - 780639 - f 76 -8.1 -4.18018 | opp_overlap 780639 GCCCTTGATCTAAAA GGCAC TTCG GTGCC TTTTTTGTATTTATG TERM 766 780639 - 780652 + F 100 -8.1 -5.59879 | opp_overlap 780639 GCCCTTGATCTAAAA GGCAC TTCG GTGCC TTTTTTGTATTTATG TERM 767 781299 - 781337 + G 88 -3.7 -5.5112 | CCGACATAGAAAGCC TGATGCGCTGGGCCAGT TTGCT GCTGACCTTGCCCGTCA TTTTTTATTCCTCAG TERM 768 781977 - 781988 + G 80 -3.6 -5.08601 | TCGTCGCCGTGCTGC TGGC CGTC GCCG TTTTTGTTGCCATCG Daro_0711 780665 - 783103 + | ATPase, E1-E2 type:copper-translocating P-type ATPase:heavy metal translocating P-type ATPase Daro_0712 783103 - 783294 + | cytochrome oxidase maturation protein cbb3-type TERM 769 783381 - 783400 + F 100 -13.6 -5.75478 | TCTCTGTTGGGGTTG GGGTGCGT TGCG ACGCACCC TTTTTTTGTCTACTT Daro_0713 783587 - 785014 + | cytochrome c oxidase cbb3-type, subunit I Daro_0714 785031 - 785666 + | cytochrome C oxidase, mono-heme subunit/FixO Daro_0715 785672 - 785848 + | Cbb3-type cytochrome oxidase component Daro_0716 785864 - 786763 + | cytochrome c oxidase cbb3-type, subunit III TERM 770 786773 - 786795 + F 100 -22 -5.07523 | opp_overlap 786765 786764 AAGTAATTGGCTGAA GCGGGGCGGC AGG GCCGCCCCGC TTTTCTTTATGTATA TERM 771 788225 - 788238 + G 74 -3.7 -4.75288 | opp_overlap 788224, overlap 788226 GGAGTCTGGCAAGAC GGGGG CTAA CCCCA TTTATTTTGATATCA Daro_0717 786894 - 788312 + | 4Fe-4S ferredoxin, iron-sulfur binding Daro_0718 788316 - 788837 + | hypothetical protein Daro_0719 788867 - 789007 + | hypothetical protein TERM 772 789050 - 789083 + F 100 -10.3 -5.78622 | gap 1, overlap 789054 AGCGGTGAATGATCG TAAGCCCCCGTTCGGA TCT TCCGT-CGGGGGTTTG TTTTTTTTGGCATGG TERM 773 789054 - 789079 + F 100 -11.1 -5.33985 | gap 1, overlap 789050 GTGAATGATCGTAAG CCCCCGTTCGGA TCT TCCGT-CGGGGG TTTGTTTTTTTTGGC Daro_0720 789117 - 789767 + | TonB, C-terminal Daro_0721 790248 - 789775 - | NUDIX hydrolase TERM 774 790379 - 790391 + H 72 -6.2 -4.42806 | CCATTCAGAGTTCCG CGGC GAGTG GCCG TTTCTTTGCACATGG Daro_0722 790489 - 791346 + | chemotaxis motA protein TERM 775 791476 - 791488 + G 71 -9.1 -3.75738 | TGCCGACTTCGTGAC CGCCA TGA TGGCG TTCTTCCTGCTGATG motB 791372 - 792322 + | flagellar motor protein MotB TERM 776 792422 - 792445 + G 83 -4.5 -5.12617 | gap 1, opp_overlap 792421 TTCTCGCTGTAGAAC CCGCGGCACG TTCGC CG-GTCGTGG TTTTTTCCCTGGTTG Daro_0724 792343 - 793560 + | chemotaxis sensory transducer Daro_0725 793579 - 793944 + | response regulator receiver TERM 777 795750 - 795776 + G 81 -8.1 -4.652 | gap 1, overlap 795751 795772 795773 795775 AGCGAGGCTTCCAGG TCTCCGA-TCAG ATGA CTGACTCGGAGG TTTTTAACCTCATTT Daro_0726 794033 - 796387 + | CheW-like protein:ATP-binding region, ATPase-like:Signal transducing histidine kinase, homodimeric:Hpt Daro_0727 796410 - 796910 + | CheW-like protein TERM 778 797264 - 797284 + G 76 -5.3 -4.5954 | opp_overlap 797261, overlap 797272 TGTCTGAAACGACCA TCTCCCCGC GCG GCAAGGAGA TTTTGTCTCGTATCC TERM 779 799190 - 799158 - g 73 -5 -4.59773 | gap 2 TGCTATTTCCAAAAA TCAGCCGACAGCACGT CGA AC-TGCC-TCGACTGA TCGTGCTCCCCAATC Daro_0728 796942 - 799320 + | histidine kinase, HAMP region: chemotaxis sensory transducer TERM 780 799859 - 799847 - g 80 -10.5 -4.07568 | opp_overlap 799847 799844 799850 799853 CGCTTTCCCTGAAAA GCCGC ATG GCGGC TGGCTTTGCCGTCAT Daro_0729 799360 - 802197 + | PAS TERM 781 802501 - 802517 + G 70 -5.1 -4.56597 | overlap 802484 802487 802499 TCGTCAATTCTTTGA CGACG AATTTGA CGTCG TTTTTCCGCGAGCCA Daro_0730 802200 - 803102 + | MCP methyltransferase, CheR-type Daro_0731 803115 - 803720 + | chemoreceptor glutamine deamidase CheD Daro_0732 803769 - 804821 + | response regulator receiver modulated CheB methylesterase Daro_0733 804899 - 805204 + | Sulfate transporter/antisigma-factor antagonist STAS TERM 782 805878 - 805894 + G 88 -3.6 -5.46657 | overlap 805873 CGTGGTTCCAGTGGA CCGTCC CGAGT GCACGG TTTTTTATTGCGATG Daro_0734 805342 - 806310 + | response regulator receiver:CheW-like protein TERM 783 806623 - 806647 + G 74 -6.3 -4.56607 | AGACGATGATGGTCG CCGAGTATTCG AAG CGCACGCTCGG TTTTCTCGTTCATGA Daro_0735 806328 - 807263 + | response regulator receiver:CheW-like protein Daro_0736 807288 - 807683 + | response regulator receiver Daro_0737 807846 - 808556 + | chemotaxis regulator CheZ Daro_0738 808568 - 810487 + | CheW-like protein:ATP-binding region, ATPase-like:Signal transducing histidine kinase, homodimeric:Hpt TERM 784 810529 - 810515 - f 88 -12.8 -3.63895 | opp_overlap 810515 GTCAACGAGTTGAAA GGGGGC TTT GCCCCC TTTTTTCTTTTTGCA TERM 785 810515 - 810529 + F 100 -12.8 -5.93252 | opp_overlap 810515 GTCAACGAGTTGAAA GGGGGC TTT GCCCCC TTTTTTCTTTTTGCA TERM 786 810787 - 810800 + G 73 -4.5 -4.68593 | TTTCTGGTTCTGGCT GTTGC CGGT GCGAC TTTTTGGATGATGGG TERM 787 810924 - 810934 + G 83 -2.4 -5.28983 | TCTCGCAGAAATATC GGGC GAT GCGC TTTTTGTCTTTTCAC TERM 788 811225 - 811239 + G 70 -4.2 -4.47217 | overlap 811223 GGTTTGGCTCATGCC GGGCAT CTG GTGTCC TTTTCCTTCCTGATT flhB 810661 - 811800 + | flagellar biosynthesis protein FlhB TERM 789 812360 - 812373 + G 80 -3.7 -5.09895 | GTCGCACAGAAATTT CGCGG GAAG CCGAG TTTTTTGGCTCGATG flhA 811801 - 813885 + | flagellar biosynthesis protein FlhA flhF 813882 - 815345 + | flagellar biosynthesis regulator FlhF Daro_0742 815338 - 816228 + | putative MinD-related protein TERM 790 816730 - 816714 - g 72 -13.7 -2.61582 | overlap 816713 CACTTTACTGACAAT GCGGCTG ATC CAGCCGC CATCCTGGAAGATAA Daro_0743 816228 - 816974 + | sigma-70 region 4 motC 816974 - 817714 + | flagellar motor protein Daro_0745 817714 - 818487 + | flagellar motor protein MotD TERM 791 818521 - 818490 - T 72 -4.4 -4.63218 | overlap 818505 CGTTGGGCAATAAAA TCAGGGCTGTCCAA AGGC TTGGAGACGCCTGA AAGCCCGAGGCTCAA Daro_0746 818997 - 818533 - | FlgN Daro_0747 819281 - 818997 - | hypothetical protein flgA 820022 - 819345 - | flagellar basal body P-ring biosynthesis protein FlgA TERM 792 820085 - 820064 - H 79 -3.7 -5.06414 | gap 1, opp_overlap 820064 820067 GTGGGGGAATAAAAA CTTGGCTGCA TGT TGCGG-CAAG TTTTGCCGATGGGTG Daro_0749 820190 - 820597 + | flagellar basal-body rod protein FlgB Daro_0750 820609 - 821022 + | flagellar basal-body rod protein FlgC Daro_0751 821036 - 821725 + | flagellar hook capping protein flgE 821741 - 823069 + | flagellar hook protein FlgE Daro_0753 823089 - 823832 + | hypothetical protein flgG 823846 - 824628 + | flagellar basal body rod protein FlgG Daro_0755 824638 - 825297 + | flagellar L-ring protein flgI 825321 - 826415 + | flagellar basal body P-ring protein TERM 793 826614 - 826627 + G 72 -2.3 -4.83169 | overlap 826615 GATGGATTGATGAGC AGCGA TAGC TCGCG TTTTTATACCGGCCT Daro_0757 826422 - 827396 + | mannosyl-glycoprotein endo-beta-N-acetylglucosamidase TERM 794 827773 - 827757 - g 73 -5 -4.72272 | overlap 827741 827738 CTGGCTGATGAAAAA GCCGGC TTGAC GCCTGC CATCCAGAGTTTTTT TERM 795 828753 - 828764 + G 71 -5.8 -4.30014 | overlap 828748 CAGCCAACTCGCGAC CAGG CTCG CCTG TTTTCAGTTGATACA flgK 827448 - 829499 + | flagellar hook-associated protein FlgK TERM 796 829810 - 829800 - g 91 -8.2 -4.76644 | opp_overlap 829806 AACATCTACGAAAAA GCGG TGG CCGC CGGTAATGGCAGCTA flgL 829515 - 830495 + | flagellar hook-associated protein FlgL Daro_0760 830492 - 830965 + | hypothetical protein Daro_0761 831763 - 830981 - | flagellar biosynthesis protein FliR TERM 797 831315 - 831303 - G 70 -3.3 -4.64766 | GGGATAGCCGAAAAA CTCTG CGC CAGCG TTGCCAGATAAAGCA Daro_0762 832016 - 831765 - | flagellar biosynthesis protein FliQ fliP 832777 - 832031 - | flagellar biosynthesis protein FliP TERM 798 832290 - 832302 + g 70 -4.1 -4.62069 | GTATCTTCAGGTGTT TCGAT CTT GTCGA TTTTTGCGATGCCGG Daro_0764 833180 - 832770 - | flagellar biosynthesis protein, FliO Daro_0765 833677 - 833234 - | Type III secretion system outer membrane O protein fliM 834686 - 833670 - | flagellar motor switch protein FliM TERM 799 834083 - 834097 + g 70 -10 -3.53761 | opp_overlap 834082 834081 ACTCCAGCGTAAAGG TCGTCG AGA CGACGA TTTCCGAAGGGGTTG TERM 800 834528 - 834570 + g 72 -11.2 -3.28712 | opp_overlap 834521, overlap 834530 GTTAACCAGTTCCAG GGTCGGCATCCGGCCACGGA CGA TCCGTTCCTGGGTGCCGATG TTGTAGGCGCGAACG TERM 801 834530 - 834568 + g 85 -16 -3.21276 | opp_overlap 834521, overlap 834528 TAACCAGTTCCAGGG TCGGCATCCGGCCACGGA CGA TCCGTTCCTGGGTGCCGA TGTTGTAGGCGCGAA Daro_0767 835256 - 834693 - | flagellar basal body-associated protein FliL Daro_0768 836293 - 835286 - | flagellar hook-length control protein Daro_0769 836811 - 836356 - | flagellar biosynthesis chaperone FliJ-like protein TERM 802 836695 - 836710 + g 75 -2.4 -4.95547 | overlap 836693 836686 836699 TTGTTCGAGCATCTG CAGGCG GCTG CGCTGG TTTTGTTCTTCTGCA Daro_0770 838236 - 836818 - | ATPase FliI/YscN TERM 803 838060 - 838075 + g 70 -10.4 -3.53012 | GTAAATCTTACAGGT GCTGCC GAGC GGCAGC TTTAGCCCGGCCGCC Daro_0771 838916 - 838221 - | flagellar assembly protein FliH Daro_0772 839935 - 838931 - | flagellar motor switch protein FliG TERM 804 839874 - 839901 + g 80 -4.1 -5.01732 | gap 1 TCTGCCGCGTGATCG GCGCCG-AGTGC GATAA GCAGTGTGGCGC TTTTTTCGAGGCCTT fliF 841679 - 839925 - | flagellar MS-ring protein TERM 805 841852 - 841836 - g 74 -7.2 -4.3467 | ATTCCGACACCAAAA CCGCCG AATTG CAGCGG GCGTTTGCCATGTTC TERM 806 841989 - 842001 + G 76 -9.1 -4.02424 | opp_overlap 841988 841987 ATCAGGAAAAAGAGG CGCTC TCC GAGCG TTTGTCATCCTTGCT TERM 807 842396 - 842425 + G 71 -7.8 -4.07568 | gap 1 TCGAATCTCGGCCAG CCGGGTGT-CGCT GATGA GGCGCGCGCCCGG TTTTCAGAAAAGGCC TERM 808 842447 - 842437 - g 77 -8.2 -4.36914 | CCGGTTTTCAGAAAA GGCC AGT GGCC AGTTGCGCCGCCTTG TERM 809 842705 - 842680 - g 72 -11.1 -3.29461 | gap 1 CAATCTTCTGGAGAA CGCCATGCAGGC AAC GCCGGCA-GGCG GCAAAATTTGCCTGA Daro_0774 841787 - 842980 + | sensor histidine kinase TERM 810 843252 - 843278 + G 72 -2.9 -4.7254 | gap 1, overlap 843254 843256 GTGGATAAGGCCGTT GATGCCATGCGC TCTG GCGCGTG-CGAC TTTTTGCTCAAGCCT TERM 811 843500 - 843517 + G 70 -3.3 -4.65916 | CATTCATCGTCAATC GGCCCGT AAGA ATGGTCC TTTTGTTGCCATCAA TERM 812 843901 - 843916 + G 74 -6.1 -4.46212 | overlap 843908 843909 GCCGTGGGGATATCG TGCCG ATTGCC CGGCA TTTTGTCGTCGAACA Daro_0775 842973 - 844346 + | helix-turn-helix, Fis-type TERM 813 844706 - 844678 - g 75 -8.1 -4.1552 | opp_overlap 844671, overlap 844679 CAGGTGCGCAACAAA CTCGTCACGGCCT ATC AGGACGTGATGAA TATGCAGATTTAATT fliE 844396 - 844719 + | flagellar hook-basal body protein FliE Daro_0777 845510 - 844716 - | YcgR Daro_0778 845872 - 845591 - | flagellar biosynthetic protein Daro_0779 846941 - 845853 - | hypothetical protein Daro_0780 847238 - 846954 - | hypothetical protein Daro_0781 847649 - 847242 - | flagellar protein FliS TERM 814 847440 - 847463 + g 77 -11.8 -3.6106 | GAGACTTGCCCTCAG GCCATTGGCA ATGA TGTCAATGGC TTTCGAAATATTCGC Daro_0782 849020 - 847662 - | flagellar hook-associated protein 2, N-terminal:flagellar hook-associated 2, C-terminal TERM 815 848696 - 848679 - G 71 -7.7 -4.03234 | gap 1, opp_overlap 848679, overlap 848691 GGTGTTTGAGACAAA CTGGTCGG AAA CCG-CCAG TTTGGTGACATTCAG Daro_0783 849443 - 849075 - | flagellar protein FlaG protein TERM 816 849472 - 849503 + r 100 -22.4 -3.28791 | overlap 849473 AGCCATGATGGGCAA TGGGCGCAGCAACG TTAC CGTTGCTGCGCCCG TTCTGGCAGGGGGGT TERM 817 849473 - 849502 + r 100 -23.7 -2.57132 | overlap 849472 GCCATGATGGGCAAT GGGCGCAGCAACG TTAC CGTTGCTGCGCCC GTTCTGGCAGGGGGG Daro_0784 850361 - 849540 - | flagellin, C-terminal:flagellin, N-terminal Daro_0785 850584 - 852974 + | TPR repeat-containing protein Daro_0786 852971 - 854065 + | TPR repeat-containing protein Daro_0787 855812 - 854055 - | GGDEF Daro_0788 856014 - 857393 + | Phage integrase TERM 818 857688 - 857698 + T 72 -6.8 -4.25388 | GCCCTTACTATAGGT GGGT TTT ACCC TTTGGTTTTGATGTA Daro_0789 858859 - 858341 - | BRO, N-terminal Daro_0790 859371 - 858856 - | hypothetical protein Daro_0791 860417 - 859461 - | hypothetical protein TERM 819 861036 - 861020 - R 85 -7.2 -4.8622 | opp_overlap 861020 861021 GGCGCCAATGAAAAA GGCCCC GGTTG GGAGCC TCTGGAGGTGTTCGG Daro_0792 861555 - 861061 - | hypothetical protein Daro_0793 861937 - 861611 - | hypothetical protein Daro_0794 861955 - 862713 + | hypothetical protein Daro_0795 863002 - 862682 - | KilA, N-terminal TERM 820 863378 - 863392 + G 76 -5.6 -4.66609 | TCATAAGGGATGAGA GGGGGC CCG GCTTCC TTTTTGAATCGGATG TERM 821 863501 - 863527 + G 73 -9.4 -3.86194 | opp_overlap 863493 863492 863499 AAATGACCAGAGACT CACCTGAGCCTC TGC GAGCATCAGGTG TTTATAGGAAAAATT Daro_0796 863272 - 864012 + | hypothetical protein Daro_0797 864333 - 863998 - | BRO, N-terminal Daro_0798 864634 - 864356 - | hypothetical protein Daro_0799 865295 - 864867 - | hypothetical protein Daro_0800 865475 - 866164 + | hypothetical protein Daro_0801 866884 - 866183 - | hypothetical protein Daro_0802 867701 - 867012 - | resolvase, N-terminal Daro_0803 867851 - 868405 + | hypothetical protein Daro_0804 869444 - 868644 - | regulatory proteins, IclR Daro_0805 869539 - 870159 + | cobyrinic acid a,c-diamide synthase TERM 822 870381 - 870347 - f 81 -5 -5.1356 | opp_overlap 870322 870354, overlap 870348 CTGGAGTAAGAAAAA CCAAGTGCTTCAGTAA ATT TTGCTGAAGTGCTTGA CGGGAGAAGGGGTTT TERM 823 871872 - 871860 - f 72 -7.7 -3.86194 | AATGGTCGGTACAAA GGGTT GCC AACCC GCGAGGGGGAGCTAA TERM 824 872376 - 872407 + F 81 -9.6 -4.09864 | opp_overlap 872376 872377, overlap 872377 TATCCTCCACCAAAA CCCAAAGATAAGCA GTGG TGTTTATCTTTGGC TTTTGAGCAATCAAT TERM 825 872407 - 872376 - f 76 -7.4 -4.2558 | opp_overlap 872376 872377, overlap 872377 TATCCTCCACCAAAA CCCAAAGATAAGCA GTGG TGTTTATCTTTGGC TTTTGAGCAATCAAT TERM 826 872377 - 872406 + F 83 -13.1 -3.05597 | opp_overlap 872376 872377, overlap 872376 ATCCTCCACCAAAAC CCAAAGATAAGCA GTGG TGTTTATCTTTGG CTTTTGAGCAATCAA TERM 827 872406 - 872377 - f 74 -10.9 -3.15027 | opp_overlap 872377 872376, overlap 872376 ATCCTCCACCAAAAC CCAAAGATAAGCA GTGG TGTTTATCTTTGG CTTTTGAGCAATCAA TERM 828 873076 - 873065 - f 72 -7.2 -4.2354 | GAAAGGCGAAAAGAA CCCC GGGA GGGG AGTGAAATAGAACCT TERM 829 875686 - 875719 + F 100 -24.1 -2.96873 | opp_overlap 875690, overlap 875690 GCCAGACTCCCCATT CAAACCCCCGTTAGC ATAA GCTAACGGGGGTTTG TCGTTTACTACCGAT TERM 830 875715 - 875690 - f 100 -19.1 -3.6502 | opp_overlap 875690 875686 GACTCCCCATTCAAA CCCCCGTTAGC ATAA GCTAACGGGGG TTTGTCGTTTACTAC TERM 831 875690 - 875715 + F 100 -19.1 -4.15841 | opp_overlap 875690, overlap 875686 GACTCCCCATTCAAA CCCCCGTTAGC ATAA GCTAACGGGGG TTTGTCGTTTACTAC TERM 832 875985 - 876009 + G 78 -4.3 -4.86001 | TGAGTTATCAAGTTC TTGCGCG CAAGTGGCGGC CGCGCAA TTTTTCTACGCTGGT Daro_0806 875969 - 877582 + | AAA ATPase, central region Daro_0807 877596 - 877919 + | hypothetical protein recR 877924 - 878523 + | recombination protein RecR TERM 833 878672 - 878702 + G 74 -12.4 -3.26947 | overlap 878661 GACCGCGGCCGTGGG CGGGGCGGGCGCGG TTG CCGCACTCGTGCCG TTCGTCTCCAGCTTG Daro_0809 878607 - 879203 + | ubiquinol-cytochrome c reductase, iron-sulfur subunit Daro_0810 879207 - 880508 + | cytochrome b/b6, N-terminal:cytochrome b/b6, C-terminal Daro_0811 880522 - 881241 + | cytochrome c1 TERM 834 881299 - 881261 - f 72 -10.9 -3.09516 | gap 1, opp_overlap 881259 881253 TCGCGGATTAGCTAA CGGCATCGCGGGTTTGGC TTCG GCCAGCCCC-CGGTGCCG AATCTCATTTTGAGG TERM 835 881576 - 881627 + G 100 -13 -4.45544 | gap 1, overlap 881621 GATGCCGGCTGATCC GATCATGCGTGCGCGTGCCCGCCAG TTG CTGGTTGGCATG-GAACGCGAGATC TTTTCGTTCATGGAA TERM 836 881847 - 881859 + G 71 -7.7 -4.07568 | opp_overlap 881847 GCACCGTTGATGAAA TACGC CGA GCGTA TTTTCAGCCGCCAAG Daro_0812 881325 - 881921 + | glutathione S-transferase Daro_0813 881924 - 882355 + | ClpXP protease specificity-enhancing factor TERM 837 882387 - 882410 + F 82 -9.6 -4.15201 | opp_overlap 882387 882401, overlap 882401 TAACGCACCAAAAAA GGGAAATTCC AACA GGGGTTTCCC CTTTTTTTTATGCAA TERM 838 882410 - 882387 - f 88 -5.2 -5.18357 | opp_overlap 882387 882401, overlap 882401 TAACGCACCAAAAAA GGGAAATTCC AACA GGGGTTTCCC CTTTTTTTTATGCAA TERM 839 882401 - 882411 + F 100 -8.2 -5.93809 | opp_overlap 882387 882401, overlap 882387 AGGGAAATTCCAACA GGGG TTT CCCC TTTTTTTTATGCAAG TERM 840 884275 - 884310 + G 76 -13.2 -3.06261 | gap 1 GTATGCGCGATCATT GGCACGGCAT-GAGCCG CAC CGGCACTGTGCCGCGCC TGTTCAACCTTGAAG Daro_0814 882483 - 885206 + | assimilatory nitrate reductase (NADH) alpha subunit apoprotein TERM 841 885201 - 885190 - f 100 -5.8 -5.73563 | overlap 885192 AGCAAACCAAAAAAA CTGC AGCG GCAG CCTGACCGCGACTGG TERM 842 885257 - 885280 + G 90 -14.6 -3.53012 | gap 1 CATCAAGGAGATTGG TCGCG-GCGCC GAA GGCGCGCGCGA TTTGCCGCGCGACGA TERM 843 885528 - 885545 + G 85 -12.7 -3.83502 | opp_overlap 885491, overlap 885520 CTGACGCCGCTGCTG GCGCTGC TCCT GCAGCGC TTTGGTGTGCCCGTC Daro_0815 885225 - 886214 + | hypothetical protein TERM 844 886238 - 886261 + F 72 -6.7 -4.20712 | GCATGCACGGCAGTT CTCAGGCTT AAGGTC GAGCCTGGG TTTTGCCATGTTCTG TERM 845 887509 - 887466 - g 80 -15.2 -3.01712 | CCCGCTGTTTGAACA GGCCAAGGTCGCCGCCAACC ATCT GGCTGGCTACGGCATTGGCC GTTACACCGGTTCGG Daro_0816 886576 - 889020 + | assimilatory nitrite reductase (NAD(P)H) large subunit precursor Daro_0817 889047 - 889358 + | assimilatory nitrite reductase (NAD(P)H) small subunit TERM 846 889406 - 889380 - f 100 -15.2 -4.18018 | opp_overlap 889381, overlap 889381 CCTTTTCAGGCAAAA CGCCGGATGACA GGC TGTCATCCGGCC CATTGAAGAAACTGG TERM 847 889405 - 889381 - f 100 -18.7 -3.10597 | opp_overlap 889381, overlap 889380 CTTTTCAGGCAAAAC GCCGGATGACA GGC TGTCATCCGGC CCATTGAAGAAACTG Daro_0818 889409 - 889861 + | hypothetical protein TERM 848 889862 - 889879 + F 72 -8.3 -3.82191 | opp_overlap 889861 CTCGGCAGCGAATAG GGGCGGC AGGC GCCGCAC TTCTTCTCAAGTTAA Daro_0819 889938 - 890750 + | formate/nitrite transporter TERM 849 890794 - 890769 - f 72 -4.5 -4.72272 | opp_overlap 890770, overlap 890770 GGGCTCGATCAAAAA GCCTCAGTCCC GCAC GGGGCTGGGGT TTTTCTTGTATAAAA TERM 850 890770 - 890793 + F 100 -12.4 -5.24796 | opp_overlap 890769 890770 GGCTCGATCAAAAAG CCTCAGTCCC GCAC GGGGCTGGGG TTTTTCTTGTATAAA Daro_0820 890816 - 892540 + | serine/threonine protein kinase TERM 851 892650 - 892603 - T 81 -13.5 -2.59431 | gap 2, overlap 892599 GTTTTGCATAAGTCA GGCCGAGGTTTGCGGCACGGC CTCCTGCC GCCA-GCCGCAT-CCTCGGCC GCCGACATCGCTATT Daro_0821 893494 - 892661 - | peptidase, metallopeptidase Daro_0822 894706 - 893948 - | hypothetical protein Daro_0823 895285 - 894977 - | plasmid stabilization system protein Daro_0824 895602 - 895282 - | hypothetical protein Daro_0825 895856 - 897070 + | nitrate transporter TERM 852 897084 - 897110 + F 100 -13.7 -4.67353 | gap 1, opp_overlap 897081 897077 GACGTAAAGTCACAC GGCGGGGC-GCT TACT GGCTGCCCCGCC TTTTTGCCTGGATAA Daro_0826 897130 - 898818 + | protein kinase:protein phosphatase 2C-like Daro_0827 898879 - 900099 + | major facilitator transporter Daro_0828 900127 - 900498 + | cobalamin (vitamin B12) biosynthesis CbiX protein Daro_0829 900516 - 901091 + | response regulator receiver:ANTAR TERM 853 901303 - 901354 + F 100 -18.3 -5.15969 | gap 3, opp_overlap 901306, overlap 901305 901306 AAGCCGATTCAAGGA C-AA-GGGCGTC-CATCCGAGCTGCC ACC GGCGGTTCGGATGCGACGCCCATTTG TTTTTTCGATTCAAG TERM 854 901305 - 901350 + F 100 -22.7 -5.08015 | gap 1, opp_overlap 901306, overlap 901303 901306 GCCGATTCAAGGACA AGGGCGTC-CATCCGAGCTGCC ACC GGCGGTTCGGATGCGACGCCCA TTTGTTTTTTCGATT TERM 855 901349 - 901306 - f 100 -21.8 -3.52652 | gap 1, opp_overlap 901305 901303 901306 CCGATTCAAGGACAA GGGCGTC-CATCCGAGCTGCC ACC GGCGGTTCGGATGCGACGCCC ATTTGTTTTTTCGAT TERM 856 901306 - 901349 + F 100 -26.2 -3.62369 | gap 1, opp_overlap 901306, overlap 901305 901303 CCGATTCAAGGACAA GGGCGTC-CATCCGAGCTGCC ACC GGCGGTTCGGATGCGACGCCC ATTTGTTTTTTCGAT TERM 857 902163 - 902151 - g 76 -9.1 -4.12188 | CGATCACCCGGAAAA GGTGC TCG GCACC ACGGCAGATTGGGTC TERM 858 902214 - 902187 - g 77 -7.6 -4.4078 | opp_overlap 902202, overlap 902189 TTGGGTCAAGCAAAA CCCGAACACGGC CCGT GCCGTAGTCGCG GCGATTCTTGATGCC Daro_0830 901387 - 902664 + | twin-arginine translocation pathway signal TERM 859 902863 - 902850 - g 83 -2.3 -5.30575 | TAAAAATGGAAAAAA CTGCA ACCC TGCCG GCCATCGAGCCGGGC Daro_0831 902729 - 903667 + | nitrate transport permease TERM 860 903922 - 903896 - g 77 -11.4 -3.6106 | opp_overlap 903896 903903, overlap 903897 TGGAAGACCGTGAAA TCGCCGGCCCCG GTC CGGAGCGGGCGG TGGTTTTCCAGAACC TERM 861 903921 - 903897 - g 77 -14.9 -2.76315 | opp_overlap 903896 903903, overlap 903896 GGAAGACCGTGAAAT CGCCGGCCCCG GTC CGGAGCGGGCG GTGGTTTTCCAGAAC Daro_0832 903682 - 904482 + | nitrate transport ATP-binding subunits C and D TERM 862 904503 - 904527 + F 83 -10.1 -4.07568 | TTCACGTTTGCCATT GTCACTACG CGCTCTC CGTAGTGAC TTTTGCCCGCCGGCC TERM 863 904532 - 904555 + F 100 -16.7 -5.17744 | TCCGTAGTGACTTTT GCCCGCCGG CCTAAC CCGGCGGGC TTTTTCTTGATCTAT TERM 864 905498 - 905510 + G 73 -4.8 -4.71828 | opp_overlap 905482 CCGCACCACTGGAGG CCCT GTGCG AGGG TTTTCTTGATCACAT Daro_0833 904633 - 906573 + | GAF:ATP-binding region, ATPase-like:histidine kinase, HAMP region:histidine kinase, dimerization and phosphoacceptor region Daro_0834 906575 - 907240 + | LuxR response regulator receiver Daro_0835 907519 - 907250 - | hypothetical protein Daro_0836 908438 - 907662 - | hypothetical protein TERM 865 908675 - 908695 + G 71 -5.3 -4.33182 | AGCAACTCATTCTGG CGACCATTG CAG CCTTGGTCG TTGTTTTCTCAGTGA TERM 866 908986 - 909012 + G 72 -2.1 -4.77438 | CTGCTGAAGGCCTTT CGCGATGTGGC AGGAA GCGATGGCGCG TTTTTGATGGTGCGT Daro_0837 908626 - 910668 + | histidine kinase, HAMP region: chemotaxis sensory transducer TERM 867 910707 - 910726 + F 100 -12.8 -5.06414 | CGCTTCTTCCCAACG CGGCGCCT TGCG GGGCGCCG TTTTTATTGCGACCA TERM 868 911362 - 911374 + G 70 -3.3 -4.72272 | CCTGCTGATCGAATC CGGTG TCA CGCTG TTTTTCATCACCCAC TERM 869 911878 - 911866 - g 73 -10.5 -3.56704 | overlap 911862 CCTCGACGAAATCAA GCCGG ATT CCGGC ATCGTGCGCCAGGGC Daro_0838 910742 - 912682 + | ABC transporter related TERM 870 913916 - 913899 - g 74 -3.3 -4.7497 | CCGATCGACGAAAAA CCGCTGG CCCG CCAAGGG GTGGCGGCTTGAGGC Daro_0839 912720 - 913928 + | major facilitator transporter Daro_0840 914958 - 914101 - | hypothetical protein TERM 871 914423 - 914433 + g 81 -4.6 -4.87626 | TCGGCGCTACGCATC GTCG GAT CGGC TTTTTGCTGTTCGAG Daro_0841 915080 - 915721 + | Beta-lactamase-like TERM 872 915722 - 915738 + T 82 -7.9 -4.56597 | GGTCGTTTCGGCTGA TCAGGCC GCC GGCCGGA TTTTTGCCGCCCAAC Daro_0842 916891 - 915722 - | signal transduction protein Daro_0843 917009 - 917626 + | HhH-GPD Daro_0844 917686 - 918654 + | acetyl-CoA carboxylase carboxyltransferase subunit alpha Daro_0845 918623 - 919594 + | PP-loop TERM 873 919604 - 919592 - f 70 -4.9 -4.58395 | TGGATGCCGGAAAAA TAACA AAC TGTTA CCAAGCGCCTTTCCG dapA 919673 - 920551 + | dihydrodipicolinate synthase TERM 874 921289 - 921275 - g 85 -5.6 -5.06414 | GGTTCTGAAGAAAAA CGAGCC GAA GTCTCG CTCGCTGCCGCCAAG Daro_0847 920567 - 921691 + | NlpBDapX lipoprotein TERM 875 921824 - 921844 + G 73 -8.9 -3.95324 | opp_overlap 921803, overlap 921826 AGCGTCTGGGCCGGC AACCGGCCG ATC TGGCCGGTA TTCTTGTTACCCATG TERM 876 921826 - 921842 + G 77 -11.5 -3.56318 | opp_overlap 921803, overlap 921824 CGTCTGGGCCGGCAA CCGGCCG ATC TGGCCGG TATTCTTGTTACCCA Daro_0848 921688 - 922455 + | Beta-lactamase-like TERM 877 922472 - 922501 + T 100 -18.1 -3.14344 | opp_overlap 922479, overlap 922479 AAAGTTGATGGGCAA TAAAAAACGGGGC CGAA GCCCCGTTTTTTA TTGGTGCAAGAAGTA TERM 878 922494 - 922479 - T 100 -11.8 -5.45652 | opp_overlap 922472 922479 ATGGGCAATAAAAAA CGGGGC CGAA GCCCCG TTTTTTATTGGTGCA TERM 879 922479 - 922494 + T 100 -11.8 -5.5112 | opp_overlap 922479, overlap 922472 ATGGGCAATAAAAAA CGGGGC CGAA GCCCCG TTTTTTATTGGTGCA Daro_0849 922777 - 922520 - | hypothetical protein Daro_0850 923389 - 922913 - | hypothetical protein rumA 923440 - 924738 + | 23S rRNA (uracil-5-)-methyltransferase TERM 880 924781 - 924766 - T 100 -11.8 -4.74132 | opp_overlap 924766 AGAGCGCATGAAAAA GGCGGC CTTG GCCGCC TTTTTTGCGACTGAT TERM 881 924766 - 924781 + T 100 -11.8 -5.03715 | opp_overlap 924766 AGAGCGCATGAAAAA GGCGGC CTTG GCCGCC TTTTTTGCGACTGAT Daro_0852 925498 - 924806 - | hypothetical protein TERM 882 925252 - 925268 + g 75 -2.1 -4.87665 | overlap 925255 GCAGCAGGGCGACAC CCAGGCC GCT GTCCTTG TTTTTCTCAATGCCC TERM 883 925731 - 925759 + r 71 -3.1 -4.84918 | gap 1, opp_overlap 925726, overlap 925726 GTAAAAATAGCTAAA CCCGCGTAAATC CTGAGT GATG-GCGCGGG TTTTGTCTTTCTGCA Daro_0853 927381 - 926233 - | patatin TERM 884 926481 - 926492 + g 100 -3.6 -6.04378 | TGCGTATCGGGCGCA GCGG AATA TCGC TTTTTTTTCTGGTTT TERM 885 927316 - 927300 - G 71 -6.5 -4.2679 | overlap 927301 CAACGGCCAGCAAAA CGCCTAC TTG GTAGGCT GCCCGCGCTCCACCA Daro_0854 927971 - 927513 - | putative 6-pyruvoyl tetrahydropterin synthase TERM 886 927884 - 927907 + g 79 -8 -4.46212 | CAATGGCGTAGCGAT GCCCGTGCAG ATGG CGGCACTGGC TTTTGTGGTCGGGGA TERM 887 928856 - 928814 - g 89 -6.4 -5.09685 | gap 1, opp_overlap 928818, overlap 928818 GAACAGATAGAAAAA GAAACGGGCATC-CGGG TTTCTGTATC CCCGTAATGCCCGTTTT CGCGATTGATGCCCT TERM 888 928852 - 928818 - g 89 -7.2 -5.02777 | gap 1, opp_overlap 928818, overlap 928814 AGATAGAAAAAGAAA CGGGCATC-CGGG TTTCTGTATC CCCGTAATGCCCG TTTTCGCGATTGATG Daro_0855 928010 - 928846 + | hypothetical protein Daro_0856 929194 - 928886 - | hypothetical protein Daro_0857 929466 - 929915 + | CBS TERM 889 929936 - 929953 + F 100 -14.1 -4.53774 | CGGAAGTTCTTGCAG GGGCGGC TCCG GCCGCCC TTTTCATTGCTTTGT Daro_0858 930041 - 931141 + | chorismate synthase Daro_0859 931193 - 931459 + | hypothetical protein TERM 890 931478 - 931508 + F 88 -12 -3.78329 | gap 1, overlap 931480 GCGCCTTTGCCCGAC GC-TGCATCCGGT AAAATC ACCGGATGCATGC TTTGCCTTACTGGCG TERM 891 931480 - 931505 + F 82 -13.4 -2.98034 | overlap 931478 GCCTTTGCCCGACGC TGCATCCGGT AAAATC ACCGGATGCA TGCTTTGCCTTACTG TERM 892 931781 - 931804 + G 74 -7.5 -4.35095 | gap 1, opp_overlap 931780 GGCTCGATAAATTAC CTGCCAT-GC TGCTT GCGATGGCAG TTTTGGCATTTTTTT Daro_0860 931501 - 932688 + | MFS family nucleoside/H(+) symporter TERM 893 934078 - 934098 + G 73 -10.4 -3.59262 | gap 1, overlap 934060 CCGGCAATGGCTGCA GCGG-CGGC GATT GCCGGCCGC TTTGCGGATGTCCGC Daro_0861 932719 - 934125 + | isopropylmalate isomerase large subunit Daro_0862 934138 - 934353 + | entericidin EcnAB TERM 894 934453 - 934478 + G 74 -11.1 -3.55563 | opp_overlap 934454, overlap 934454 TCCTGAAGTCGATCA AGCGTTCGGGC TTCG GCCCGAATGCC TTTGACGAATGGCGT TERM 895 934477 - 934454 - g 74 -12.4 -3.18681 | opp_overlap 934453 934454 CCTGAAGTCGATCAA GCGTTCGGGC TTCG GCCCGAATGC CTTTGACGAATGGCG TERM 896 934454 - 934477 + G 77 -14.6 -2.73124 | opp_overlap 934454, overlap 934453 CCTGAAGTCGATCAA GCGTTCGGGC TTCG GCCCGAATGC CTTTGACGAATGGCG leuD 934353 - 934991 + | isopropylmalate isomerase small subunit Daro_0864 935004 - 936056 + | 3-isopropylmalate dehydrogenase Daro_0865 936090 - 937223 + | aspartate-semialdehyde dehydrogenase TERM 897 937241 - 937270 + F 100 -15.2 -4.17556 | opp_overlap 937241 937247, overlap 937247 AGGTATTCTGGCAAA TAAAAACCGGGG CTTCGA CCCCGGTTTTTA TTTGTTGGGAATATG TERM 898 937270 - 937241 - f 100 -15.9 -3.54543 | opp_overlap 937241 937247, overlap 937247 AGGTATTCTGGCAAA TAAAAACCGGGGC TTCG ACCCCGGTTTTTA TTTGTTGGGAATATG TERM 899 937247 - 937264 + F 100 -9.8 -5.47159 | opp_overlap 937247 937241, overlap 937241 TCTGGCAAATAAAAA CCGGGG CTTCGA CCCCGG TTTTTATTTGTTGGG TERM 900 937264 - 937247 - f 100 -10.5 -5.27335 | opp_overlap 937241 937247, overlap 937241 TCTGGCAAATAAAAA CCGGGGC TTCG ACCCCGG TTTTTATTTGTTGGG TERM 901 937428 - 937413 - g 85 -6 -5.10029 | overlap 937414 937415 ATCAAGTTCAAAAAA CGTGCG GCAG CGCTCG CTGTCGCATCATGCA TERM 902 938330 - 938318 - g 82 -9.1 -4.36931 | CAAGGTAGAGGAAAA GGCAG TGC CTGCC GAGCAGTCCAAGGAT TERM 903 938547 - 938516 - g 100 -8.8 -4.98531 | gap 1, overlap 938498 938541 TCTGGAAATGAAAAA CCAGAAGCTGGCTGA ACT TCAGC-AACCTCCGG TCAAGAAGGAAGAGC TERM 904 938766 - 938787 + G 76 -12.9 -3.2963 | opp_overlap 938751, overlap 938773 938778 CCGAAGGTGGTCGCT CCGCCGCCG GCTC CGGCGCCGG TTGTCGAGGAGTCGT Daro_0866 937380 - 940490 + | hypothetical protein TERM 905 940508 - 940537 + F 95 -12.1 -4.08945 | overlap 940509 TTCAGGCTTGTGATC GGCACATGGCCCC GCAA GGGGCTGTGTGCA TTTTGGGAGCCTGGT TERM 906 940509 - 940536 + F 95 -15.6 -3.05046 | overlap 940508 TCAGGCTTGTGATCG GCACATGGCCCC GCAA GGGGCTGTGTGC ATTTTGGGAGCCTGG TERM 907 940617 - 940631 + G 70 -3.4 -4.71426 | overlap 940618 CGCAGTTTGTCGGAT ACGCCG GCT TGGCGA TTTTGTTGCTCGGGA TERM 908 940837 - 940856 + G 77 -3.5 -4.91459 | gap 1, overlap 940840 TCGATTGCTTGTCAT GCT-GGCC TGTCT GGCCTGGC TTTTTGTCAATGTTG Daro_0867 940553 - 941146 + | hypothetical protein truA 941143 - 941931 + | tRNA pseudouridine synthase A TERM 909 941997 - 942011 + G 70 -10 -3.41745 | GCTGTCGCGGCCGGT GCCGAT GCG ATCGGC TTCGTCTTCTACCCG Daro_0869 941928 - 942554 + | phosphoribosylanthranilate isomerase TERM 910 942662 - 942643 - g 72 -11.4 -3.41234 | GATGAATTGAAGGAA GCCTACGC GGCT GCGCAGGC TGATCCGGCCTTCCG Daro_0870 942541 - 943740 + | tryptophan synthase subunit beta TERM 911 944361 - 944350 - g 89 -7.2 -5.02074 | opp_overlap 944355 944358, overlap 944351 TGATTCGTGAAAAAA CCGG CCTG CCGG TCGGCGTCGGTTTTG Daro_0871 943740 - 944546 + | tryptophan synthase, alpha chain Daro_0872 944543 - 945412 + | acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha Daro_0873 945409 - 946719 + | folylpolyglutamate synthetase TERM 912 946763 - 946785 + G 83 -2.6 -5.18866 | gap 1, overlap 946765 CCTCAAGAAACGCGC CCGCCGCCG TCTGGT CGG-GGCAG TTTTCTTTGTTTCCG Daro_0874 946722 - 947441 + | sporulation related TERM 913 947868 - 947901 + G 74 -11.2 -3.53091 | gap 1, opp_overlap 947866 947899 CACCTTTGGAAACTG TCGTTTTGGCAGCCA AGCCC TGGTTGCC-AAACGA TTTGGCAAAACGAAT Daro_0875 947438 - 947929 + | colicin V production protein Daro_0876 947963 - 949480 + | amidophosphoribosyltransferase Daro_0877 949480 - 950661 + | O-succinylhomoserine sulfhydrylase TERM 914 950713 - 950743 + F 76 -12.6 -2.53876 | opp_overlap 950706 950705 CAAACAACCGGAGCA GGGCATTTCCAGAG TCA CTGGGGAAATGCCC TGAATTGAAATCCGG TERM 915 950788 - 950808 + F 74 -8.9 -3.86822 | overlap 950789 CGCTGCATCGTTGCT CCCTGGCCG TTC CGGTCAGGC TTTATCCAAGGATTC TERM 916 950789 - 950807 + F 78 -12.4 -2.91772 | overlap 950788 GCTGCATCGTTGCTC CCTGGCCG TTC CGGTCAGG CTTTATCCAAGGATT TERM 917 952061 - 952048 - g 71 -5.9 -4.3739 | overlap 952058 CATCCGCGCAGAAAA CGGCC CAAA AGCCG GGTGGTCCGGCGCAA TERM 918 952072 - 952058 - g 71 -8.5 -4.14013 | overlap 952048 GAAAACGGCCCAAAA GCCGG GTGGT CCGGC GCAACATCGCAGCGG Daro_0878 950826 - 952103 + | helicase, C-terminal:DEAD/DEAH box helicase, N-terminal Daro_0879 952232 - 953941 + | type II secretion system protein E Daro_0880 953947 - 955167 + | type II secretion system protein TERM 919 955469 - 955480 + G 74 -3.6 -4.81249 | ATTTCGACCGGCCTG CCGG GGAA CTGG TTTTTCGCTTTCGCG Daro_0881 955168 - 955602 + | hypothetical protein Daro_0882 955624 - 956238 + | general secretion pathway protein H Daro_0883 956262 - 956702 + | general secretion pathway protein H TERM 920 956738 - 956759 + G 100 -11.5 -5.3104 | opp_overlap 956738 TTTTTCGTGATGGAA GGCCTGGCG TCAC TGCCGGGCC TTTTGTTTTTAGTGC Daro_0884 956719 - 957249 + | N-terminal methylation site Daro_0885 957239 - 957802 + | hypothetical protein Daro_0886 957786 - 958637 + | general secretion pathway protein H Daro_0887 958634 - 959095 + | MSHA biogenesis protein MshP TERM 921 961461 - 961479 + G 81 -5.3 -4.75309 | overlap 961463 GTTCCTTCACCTATT CGGAAGT CGGGA ATTTCCG TTTTCTTGGCTTTGA Daro_0888 959132 - 962707 + | hypothetical protein Daro_0889 962777 - 963703 + | hypothetical protein Daro_0890 963700 - 964350 + | hypothetical protein Daro_0891 964347 - 965027 + | hypothetical protein Daro_0892 965012 - 965407 + | hypothetical protein Daro_0893 965404 - 967161 + | type II and III secretion system secretin TERM 922 967391 - 967408 + G 73 -10.5 -3.62518 | overlap 967383 967407 GGCGCCTGCTGCAAG CCCTGCC GGAA GGCGGGG TTTCGGCCTATTTGC Daro_0894 967195 - 968022 + | general secretion pathway protein, ATPase TERM 923 968541 - 968511 - g 100 -13.3 -4.4727 | gap 1, overlap 968500 TCAAGATCGAGAAAA GCCCGATCGCGGCG ACCC CGC-GTGATCGGGC CGATGCCGAGTACCG Daro_0895 968024 - 969088 + | TPR repeat-containing protein TERM 924 969081 - 969095 + F 78 -8.6 -4.27316 | TTGCCGAACAGCATT TGCGTT AAC AACGCA TTTTCCGTTGCCCAG Daro_0896 969199 - 970857 + | acyl-CoA synthetase Daro_0897 971735 - 970899 - | DNA-binding transcriptional activator MhpR Daro_0898 972417 - 971767 - | GntR family transcriptional regulator TERM 925 972523 - 972542 + H 78 -10.8 -3.4382 | opp_overlap 972523, overlap 972517 972538 GTTGTGATCCAAAAA CTTGCATG CTAG CATGCAAG TTAATCTTGCTTGTT TERM 926 972542 - 972523 - H 100 -10.8 -4.65895 | opp_overlap 972523 972517 972538 GTTGTGATCCAAAAA CTTGCATG CTAG CATGCAAG TTAATCTTGCTTGTT Daro_0899 972585 - 974345 + | monooxygenase, FAD-binding:FAD dependent oxidoreductase TERM 927 974606 - 974592 - g 72 -2.8 -4.8622 | overlap 974593 CTGGGCAAGGAAAAA GTCAAT TTC ATTGTC ATGGACGATGCAACC Daro_0900 974415 - 975554 + | extracellular ligand-binding receptor TERM 928 975621 - 975592 - f 72 -10.8 -3.06831 | opp_overlap 975588 TGAATTTTCACTGAA GTTTGCCAAGGG CTAACC CCCTTGGCAAAT AAGCATTTGTGGCCG Daro_0901 975924 - 976862 + | 3-(2,3-dihydroxyphenyl)propionate dioxygenase Daro_0902 976917 - 978125 + | hypothetical protein Daro_0903 978136 - 978687 + | flavin reductase-like, FMN-binding Daro_0904 978728 - 979861 + | extracellular ligand-binding receptor TERM 929 979892 - 979928 + G 77 -15.2 -2.79684 | gap 2, opp_overlap 979869 979891 979915, overlap 979890 979886 TGCTCAGCACGGAAG CCG-CGGCGG-CGCTGCT CAA GGCAGCGACCGCCGATGG TCGTTCCATTGCTCC TERM 930 980342 - 980285 - g 82 -12.9 -3.64703 | gap 1 TTCCGTCGATCGAAA TCGTCGACAGCCGCATCGA-GAACTGGA ACA TCAAATTCGTCGATACGGTCGCCGACAA CGCTTCCAGCGGCCT Daro_0905 979861 - 980652 + | hydratase/decarboxylase TERM 931 980723 - 980699 - g 70 -5 -4.43669 | gap 1, overlap 980701 ACCCAAAAAATCAAA TG-TGCCCTGA TTGG TCCGGGCAACA TCGGCACCGATCTGC Daro_0906 980681 - 981595 + | acetaldehyde dehydrogenase TERM 932 982453 - 982474 + G 70 -12.3 -2.97613 | gap 1, overlap 982448 982455 TGACCGCGATGCACT GACGCTCGGC TAT GCCG-GCGTC TATGGTTCCTTCCTG Daro_0907 981608 - 982639 + | 4-hydroxy-2-ketovalerate aldolase TERM 933 984483 - 984517 + G 73 -9.1 -3.85698 | overlap 984468 984485 CCGCGCTGCATGCCT GTGCCGCCGGTTGGC TTTAT GCCCACCTGCAGCGC TTTGTGAACCCGACG Daro_0908 982748 - 985603 + | inner-membrane translocator:ABC transporter related TERM 934 985751 - 985735 - g 71 -7.9 -4.07687 | ACGGCGCCGGCAAAA CGACGAC GCT GTCGGCG ATCATGGGTCTGCTG Daro_0909 985605 - 986351 + | ABC transporter related TERM 935 986903 - 986931 + G 71 -8.7 -3.75153 | opp_overlap 986903 GGGCTATTCTCGAAA CTGGTCAGCGCCG CAC CGGCGCCCATCGG TTTCGGTTCCGGGCC Daro_0910 986375 - 986959 + | hemerythrin HHE cation binding region Daro_0911 987001 - 987870 + | Alpha/beta hydrolase fold TERM 936 987897 - 987915 + T 100 -7.3 -5.80817 | overlap 987898 TCCTCTGGTGTACTT CGGCCGC CTTGT GCGGCCA TTTTTTTGTGTTCGC TERM 937 987898 - 987914 + T 88 -10.8 -4.06863 | overlap 987897 CCTCTGGTGTACTTC GGCCGC CTTGT GCGGCC ATTTTTTTGTGTTCG Daro_0912 988565 - 987948 - | hypothetical protein Daro_0913 990420 - 988567 - | ATP-dependent DNA helicase RecQ TERM 938 988750 - 988717 - GR 78 -12.3 -2.96216 | opp_overlap 988717 988718 988733 GTGCAGGATGACATA GGCCGGTACTGCCTG CTCT CTGGCCGTATCGGCC CGCCATTTGCGCAGC TERM 939 989927 - 989949 + gr 77 -12 -3.18264 | opp_overlap 989922 989921, overlap 989928 GGCCGGAAATCGTGG CCCCATTGCG AGA CGCAATGGGC TTCGTCAATGGCGAA TERM 940 989928 - 989948 + gr 93 -15.5 -2.50816 | opp_overlap 989922 989921, overlap 989927 GCCGGAAATCGTGGC CCCATTGCG AGA CGCAATGGG CTTCGTCAATGGCGA Daro_0914 991123 - 990395 - | UDP-2,3-diacylglucosamine hydrolase TERM 941 990679 - 990705 + gr 83 -5 -5.08824 | overlap 990665 AGCGGCCGAGCAGGC TGCGCAGGAAGC GTG GCTTGGCGCGCA TTTTTTCCATCCACG TERM 942 991097 - 991068 - GR 100 -14.9 -4.25458 | overlap 991056 991069 991071 AAGCGGAGGAACAAA GCAGTCGCCCCGG GTGA CCGGGGCGACAGA TGCAGATCGGAGATG TERM 943 991096 - 991069 - GR 100 -18.4 -3.14552 | overlap 991056 991068 991071 AGCGGAGGAACAAAG CAGTCGCCCCGG GTGA CCGGGGCGACAG ATGCAGATCGGAGAT TERM 944 991094 - 991071 - GR 100 -19.6 -3.12942 | overlap 991056 991069 991068 CGGAGGAACAAAGCA GTCGCCCCGG GTGA CCGGGGCGAC AGATGCAGATCGGAG Daro_0915 991611 - 991120 - | peptidyl-prolyl cis-trans isomerase, cyclophilin type TERM 945 991644 - 991675 + r 75 -6.7 -4.30576 | gap 1, opp_overlap 991656 CAGAGATGATTTTGA CGTTCTGAATGACA ACCGG TGTCGT-CGGAACG TTTTCGTAATAGCCA Daro_0916 992193 - 991621 - | peptidyl-prolyl cis-trans isomerase, cyclophilin type Daro_0917 993488 - 992193 - | ErfK/YbiS/YcfS/YnhG TERM 946 993339 - 993322 - G 84 -9.1 -4.57837 | opp_overlap 993322 993321 ACAGTCGTCGAAAAA GCTGACC CGGA GGCCAGC ATTTCGGCAGCGCTT Daro_0918 994651 - 993488 - | TPR repeat-containing protein TERM 947 994051 - 994024 - G 72 -11.2 -3.28712 | gap 1 CCGGTTTTGCGACAA CCGG-GGCGACAG GTG CCGGCGCCACCGG AGCTACCGGCGCAGG TERM 948 995340 - 995314 - g 86 -18.1 -2.70932 | CGTGCTCTGGAAGCA TGCCAAGCCGG GCGAG CCGGCTTGGCA GTCGCCGTGGGGCGA TERM 949 995507 - 995467 - g 70 -10.7 -3.44051 | gap 1, opp_overlap 995467, overlap 995472 CCCGCACCACGAGAA CGAAATTGC-GCAATCAG AGGGTG CCAATTGCTGCAATTTCG TCAATTACTGGATGC TERM 950 995582 - 995556 - g 91 -5.8 -5.32944 | opp_overlap 995563 TTGATAACGAAAAAA TGTCGAAGTCGC TGG GCAACTTCTTCA CCATTCGGACTGTAC cysS 994757 - 996127 + | cysteinyl-tRNA synthetase TERM 951 996154 - 996137 - T 100 -12.7 -5.26875 | opp_overlap 996137 GCCTGAACGAAAAAA GCCCGTC CATG GACGGGC TTTTTTGATGGTGAA TERM 952 996137 - 996154 + T 100 -12.7 -5.1861 | opp_overlap 996137 GCCTGAACGAAAAAA GCCCGTC CATG GACGGGC TTTTTTGATGGTGAA Daro_0920 997322 - 996174 - | extracellular ligand-binding receptor TERM 953 997036 - 997048 + g 71 -5.5 -4.4261 | overlap 997037 GCGAAGACTTGCTTG TCCTG AAT CAGGG TTTTGGTGTTGGCCA TERM 954 997478 - 997455 - R 100 -14.6 -5.0538 | gap 1 CGTGAGCGTAAAAAA GGGCTG-GCGC ATG GCGCACAGCCC GTCGGCTTATCGGTG Daro_0921 998655 - 997507 - | extracellular ligand-binding receptor TERM 955 998040 - 998053 + g 70 -3.1 -4.64495 | gap 1, overlap 998037 998040 CGACCGTGGCAGTGG CC-GAC GGG GTCAGG TTGTTTTTCTTCAGT TERM 956 998900 - 998879 - R 100 -12.3 -5.60993 | opp_overlap 998879 CGGTGGACAAAAAAA GACCCGAGC ATGG ACTCGGGTC TTGATTCGCTTGGCT TERM 957 998879 - 998900 + r 80 -11.6 -3.40788 | opp_overlap 998879 CGGTGGACAAAAAAA GACCCGAG CATGGA CTCGGGTC TTGATTCGCTTGGCT Daro_0922 1000085 - 998949 - | heat shock protein DnaJ TERM 958 999556 - 999543 - G 77 -3.8 -4.87665 | CTGGATTGAGAAAAA GCCT TGCTGC AGGC GAACCTGGCCGGAAC TERM 959 999999 - 1000017 + g 78 -4.4 -4.82667 | CGGATGGTGCTTCAT GGCCAGCT TGC GGTAGGCC TTTTTGATCTCGTCG TERM 960 1000150 - 1000110 - R 100 -21.2 -3.97368 | gap 1, opp_overlap 1000106 1000148 CCGTCAAGTGACAAA GGCGCCGAGCGCCGCCGGA GATT TCCGGTAG-GCTCGGCGCC GGGCTGTTAGGCCTG Daro_0923 1002106 - 1000169 - | heat shock protein Hsp70 TERM 961 1002137 - 1002172 + r 72 -5.4 -4.46233 | gap 1, overlap 1002139 1002146 GATGAATTGCTGATG TTCGTGAACT-GGGGGC GCG GCCCCCGATTTCAAGTA TTTATTTGCCCTTGG TERM 962 1002146 - 1002162 + r 73 -11.5 -2.8162 | overlap 1002139 1002137 CTGATGTTCGTGAAC TGGGGGC GCG GCCCCCG ATTTCAAGTATTTAT Daro_0924 1002728 - 1002174 - | GrpE protein TERM 963 1002689 - 1002711 + g 75 -8.4 -4.14392 | CAACGGCGGGTTCGT TGCCCAGCAT TGC GTCCTGGGCA TTTTCGGGGTTAGAC Daro_0925 1002879 - 1004243 + | cyclic nucleotide-binding:protein kinase TERM 964 1004264 - 1004247 - T 95 -12.7 -4.14739 | opp_overlap 1004247 TCACCCATGTGAAAA CCGCCTC CGAA GAGGCGG TTTTATTGAAGTCGA TERM 965 1004247 - 1004264 + T 100 -12.7 -4.65916 | opp_overlap 1004247 TCACCCATGTGAAAA CCGCCTC CGAA GAGGCGG TTTTATTGAAGTCGA Daro_0926 1005908 - 1004289 - | histidine kinase, HAMP region: chemotaxis sensory transducer TERM 966 1005541 - 1005566 + g 72 -2.5 -4.83615 | gap 1, opp_overlap 1005533, overlap 1005543 GATTCAACCGACATG TAGGGCGT-GCC GGA GGCCATGACCTG TTTTTCTAGCACATC Daro_0927 1006996 - 1005941 - | hypothetical protein Daro_0928 1007496 - 1007053 - | thioredoxin TERM 967 1007510 - 1007527 + r 74 -8.5 -3.91144 | opp_overlap 1007510 ATCTCAGGCTCCAAA TATCAGG TTGT CCTGATA TTTGTGCCATCTGAC hemH 1008651 - 1007548 - | ferrochelatase TERM 968 1008045 - 1008059 + g 73 -10 -3.58343 | overlap 1008032 1008056 1008058 GTCGGTCGTTGTCGC CCAACG ATC CGTTGG TTTGCCAGTGCTGAC TERM 969 1008056 - 1008081 + g 70 -4.7 -4.56597 | opp_overlap 1008078, overlap 1008045 1008058 TCGCCCAACGATCCG TTGGTTTGCCA GTGC TGACGAACCGA TTTTTCGAGGGCAGC hrcA 1009679 - 1008651 - | heat-inducible transcription repressor TERM 970 1009022 - 1009076 + g 75 -7.7 -4.15396 | gap 1 TGTTTTCGGCCATGG CAGCATCGCCGGCATCAAGCGCCAGG GCCA TCAGGGGCTTGATGTCGTCGC-GCAG TTGTTTGATTTCCAC Daro_0931 1009727 - 1010656 + | ATP-NAD/AcoX kinase Daro_0932 1010656 - 1012329 + | DNA repair protein RecN Daro_0933 1012931 - 1012326 - | hypothetical protein Daro_0934 1013392 - 1012949 - | ferric uptake regulator family protein Daro_0935 1013487 - 1013969 + | SmpA/OmlA TERM 971 1014585 - 1014606 + G 85 -15.9 -3.21924 | overlap 1014584 CGTCGACTATCGGCT TCGCCACCG TGCG CGGTGGCGA TATTGTCGGCGATCA Daro_0936 1013972 - 1014778 + | dihydrodipicolinate reductase TERM 972 1015215 - 1015227 + G 76 -5.5 -4.65263 | overlap 1015213 1015206 CAAGGCGCGTGACGG CCAGT GGC GCTGG TTTCTTTTGCGCGGT TERM 973 1015372 - 1015382 + G 78 -2.4 -5.02476 | opp_overlap 1015363 1015351 GAATCAGCCAACAAG GCGC GCG GGGC TTTTTTGGCCAATAT Daro_0937 1014784 - 1017342 + | response regulator receiver:ATP-binding region, ATPase-like:histidine kinase A, N-terminal:Hpt TERM 974 1017423 - 1017389 - f 100 -16.5 -4.67904 | gap 1, overlap 1017392 TAGGAAGGTTAAAAA GCACAAGCGGGGAGGC GCAA GCCTTCCCGCTTG-GC ACATGAATAAGCAGA TERM 975 1017421 - 1017392 - f 100 -17.9 -3.26237 | overlap 1017389 GAAGGTTAAAAAGCA CAAGCGGGGAGGC GCAA GCCTTCCCGCTTG GCACATGAATAAGCA Daro_0938 1017458 - 1018615 + | carbamoyl-phosphate synthase small subunit TERM 976 1021711 - 1021673 - g 81 -5.4 -4.7254 | gap 2 ACGGTGGAGGAAAAA CGCGGTGC-AATC-AACG ACTCG CGTTCGATCCGCACCTCG GGCCTGCAGGCACGG carB 1018631 - 1021837 + | carbamoyl phosphate synthase large subunit TERM 977 1021850 - 1021882 + F 81 -7 -4.70319 | gap 2, opp_overlap 1021844 TAAGACCAACCCGAA CCGCCGGGTAGCCC TTGTTTT GGGC-GCC-GGCGG TTTTGCTTTTGCTGG Daro_0940 1021864 - 1022382 + | transcription elongation factor GreA Daro_0941 1022387 - 1022848 + | hypothetical protein Daro_0942 1023211 - 1022849 - | hypothetical protein TERM 978 1022975 - 1022959 - G 70 -4.3 -4.57073 | overlap 1022946 1022962 1022963 GAGCCGGGCGAAAAA CGACCAG CAG CTTGCCG ATATGTTGAACCGGA TERM 979 1023112 - 1023128 + g 95 -13.7 -4.09685 | CGATTTCCTTGAGTA CGGCCTC GGT GAGGCCG TTTTCGGCAATCGAC TERM 980 1023241 - 1023229 - H 75 -5.5 -4.60924 | TAAACCTTTCAAAAA CGGCA TTT TACCG AATGAAAAGAACCAG Daro_0943 1023243 - 1023860 + | ribosomal RNA methyltransferase RrmJ/FtsJ TERM 981 1023839 - 1023863 + F 71 -2.2 -4.89521 | overlap 1023839 1023840 CCCTGAGCTTTATTT G-CTCGGACGCA CAT TGCGT-TGAGAC TTTTGTTTAGAATGT Daro_0944 1023916 - 1025796 + | FtsH peptidase TERM 982 1025816 - 1025837 + F 100 -17.3 -5.27023 | TCCAATCTTTCAACC GGCCGGGAG CGCT CTCCCGGCC TTTTGTTTTTCAGAT Daro_0945 1025853 - 1026692 + | dihydropteroate synthase Daro_0946 1026685 - 1028037 + | phosphoglucosamine mutase TERM 983 1028325 - 1028339 + G 71 -6.4 -4.25283 | opp_overlap 1028325 TCAGTCTGTAAGCGA GCATCA GTC TGGTGC TTTTACTGGCGAAGT Daro_0947 1028125 - 1028874 + | triosephosphate isomerase secG 1028887 - 1029258 + | preprotein translocase subunit SecG Daro_0949 1029457 - 1029831 + | NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 Daro_0950 1029841 - 1030317 + | NADH dehydrogenase subunit B TERM 984 1030913 - 1030893 - g 77 -11.1 -3.67188 | opp_overlap 1030892, overlap 1030891 AGCCACGCGAAAACA CCCCGCGCA TTG TGCGCGAAG ATACTTTTGGGGATA Daro_0951 1030337 - 1030942 + | NADH dehydrogenase subunit C TERM 985 1030972 - 1031002 + G 73 -13.2 -2.83012 | overlap 1030971 CGCTTAACTTTGGTC CGCAGCACCCTGCG GCG CACGGTGTGCTGCG TCTGGTGCTGGAGTT Daro_0952 1030935 - 1032188 + | NADH dehydrogenase subunit D TERM 986 1032310 - 1032299 - g 85 -5.8 -5.1356 | overlap 1032300 GCCCAGGAAGAAAAA GGCT GGCT AGCC CCCGAGTCCATCGAG Daro_0953 1032188 - 1032661 + | NADH dehydrogenase subunit E Daro_0954 1032661 - 1033989 + | NADH-quinone oxidoreductase, F subunit TERM 987 1036208 - 1036196 - g 73 -9.1 -3.90586 | AGACCATGGCACAAA TCGGC ATT GCCGA TAACGGCCAAGTTCG Daro_0955 1034035 - 1036368 + | NADH dehydrogenase subunit G Daro_0956 1036369 - 1037418 + | respiratory-chain NADH dehydrogenase, subunit 1 TERM 988 1037895 - 1037880 - g 73 -9 -3.95022 | opp_overlap 1037879 1037875 GCTACGAAGATCAAA TCGCGA AAGA TCGCGA ACTTGATGCTTCTTA Daro_0957 1037429 - 1037917 + | NADH dehydrogenase subunit I Daro_0958 1037930 - 1038526 + | NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 Daro_0959 1038541 - 1038852 + | NADH dehydrogenase subunit K TERM 989 1040810 - 1040838 + G 73 -9.5 -3.92641 | TGGATGGATTTCATC CGTGACCCGCCTG TTC CAGACCGGTTACG TTTATCACTACGCTT Daro_0960 1038861 - 1040909 + | NADH-plastoquinone oxidoreductase, chain 5 Daro_0961 1040943 - 1042427 + | NADH dehydrogenase subunit M TERM 990 1042926 - 1042895 - g 82 -15.2 -3.14344 | gap 1, opp_overlap 1042890 GATGGTCGCCATGAA TCGC-GACTCGGTGG TTT CCACCGAGGCTGCGA TGAAGTACTTCGTTC Daro_0962 1042440 - 1043924 + | NADH dehydrogenase subunit N TERM 991 1043952 - 1043970 + F 100 -13.1 -5.18371 | opp_overlap 1043952 AACAAGTTTGCAGAA CGCCCCG CCAGT CGGGGCG TTTTATTTTGTGGAG TERM 992 1043970 - 1043952 - f 89 -13.1 -3.32066 | opp_overlap 1043952 AACAAGTTTGCAGAA CGCCCCG CCAGT CGGGGCG TTTTATTTTGTGGAG Daro_0963 1043993 - 1044535 + | NUDIX hydrolase TERM 993 1044578 - 1044610 + T 100 -19.3 -2.90227 | opp_overlap 1044583, overlap 1044583 CGCAACGACGTAACG AAAAAGGCCCCGGAA AAT TTCCGGGGCCTTTTA ATTTGATGCTTGGGG TERM 994 1044605 - 1044583 - T 100 -19.2 -4.88407 | opp_overlap 1044578 1044583 CGACGTAACGAAAAA GGCCCCGGAA AAT TTCCGGGGCC TTTTAATTTGATGCT TERM 995 1044583 - 1044605 + T 100 -19.2 -4.59376 | opp_overlap 1044583, overlap 1044578 CGACGTAACGAAAAA GGCCCCGGAA AAT TTCCGGGGCC TTTTAATTTGATGCT Daro_0964 1047527 - 1044633 - | ribonucleotide reductase large subunit TERM 996 1047698 - 1047675 - R 86 -3.8 -5.40072 | opp_overlap 1047689, overlap 1047686 1047690 GTTGGGGTAAAAAAA GCCCGAAA AAACAAAG CTCCGGGC ACCTTGCGGTGGCCG TERM 997 1047720 - 1047686 - R 90 -7.1 -5.08011 | gap 1, opp_overlap 1047689, overlap 1047675 1047690 AAAAGCCCGAAAAAA CAAAGCTCCGGGCACC TTGC GGTGGCCGAAGCA-TG TTCAAAATATTTTTG TERM 998 1047717 - 1047690 - R 100 -13.4 -5.04249 | opp_overlap 1047689, overlap 1047675 1047686 GCCCGAAAAAACAAA GCTCCGGGCACC TTGC GGTGGCCGAAGC ATGTTCAAAATATTT Daro_0965 1049880 - 1047835 - | PAS:hemerythrin HHE cation binding region TERM 999 1047903 - 1047921 + g 83 -4.6 -5.03715 | CCGGGGTGCTGGCGA CATCGA AACGTCC TCGATG TTTTTTGACAATGAT TERM 1000 1048204 - 1048218 + g 71 -5.6 -4.33928 | GATATCGCCCAGATC GCGGAC CAC GTCGGC TTTGTATTTCAACTC TERM 1001 1049202 - 1049221 + g 81 -4.2 -4.89339 | overlap 1049183 1049167 1049204 CGGCCTCGGACCGCC GGTGTTCG GACT CGAGCAGC TTTTTCTGGGTGATT Daro_0966 1052123 - 1049883 - | type II secretion system protein E TERM 1002 1050387 - 1050350 - G 84 -10.5 -4.16016 | overlap 1050379 1050380 GCAGGGTCGAATAAA CGAGGTGGCCGGTCAGG GCGG CATGAAAAGCCACCTCG GCGGTTTCGAAGTCA Daro_0967 1053325 - 1052120 - | sensor histidine kinase Daro_0968 1053966 - 1053322 - | MglA protein Daro_0969 1054539 - 1053973 - | response regulator receiver Daro_0970 1055852 - 1054536 - | response regulator receiver Daro_0971 1059412 - 1055849 - | PAS TERM 1003 1056627 - 1056642 + g 85 -6.1 -5.09426 | ATGCCGGCAGCCAGT TGGCC GATGGA GGCCA TTTTTTCCGATTGCA TERM 1004 1057044 - 1057024 - G 93 -8.2 -4.96848 | overlap 1057027 TGTCGGATACAAAAA CGACCGGC CAGCC GCCTGTCG CCTGCCAGCGGAAAC TERM 1005 1057966 - 1057993 + g 74 -5.5 -4.56597 | gap 1, overlap 1057962 TGTCGCCCAATCGGC GCAG-GCGTTCC TCGCT GGCGCGCACTGC TTTTTCGGCCGCGAC TERM 1006 1059018 - 1059037 + g 78 -10 -3.94634 | gap 1 TTGTTTTTCAACTGT GCCCGG-TC GGC GATCCGGGC TTGTTTGCCGTCGTG Daro_0972 1062386 - 1059402 - | response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) Daro_0973 1065595 - 1062401 - | PAS/PAC sensor hybrid histidine kinase TERM 1007 1063869 - 1063900 + g 73 -9.4 -3.88291 | overlap 1063867 1063871 1063872 AGTTCCTGCGTGCGC TGTTGCACCAGCCT TTCG AGGCCGGTGCGGTA TTTCTCCAACTCCTC TERM 1008 1063871 - 1063898 + g 70 -9.8 -3.52906 | overlap 1063867 1063869 1063872 TTCCTGCGTGCGCTG TTGCACCAGCCT TTCG AGGCCGGTGCGG TATTTCTCCAACTCC TERM 1009 1065744 - 1065712 - R 78 -9 -3.90318 | overlap 1065713 TTACCATTCCAGAAA TGCTTCAGCCGCCC GAAGG GGGCGGCTGAGGGG GCGACTCGTCAATCA TERM 1010 1065743 - 1065713 - R 78 -12.5 -2.93869 | overlap 1065712 TACCATTCCAGAAAT GCTTCAGCCGCCC GAAGG GGGCGGCTGAGGG GGCGACTCGTCAATC Daro_0974 1066987 - 1065806 - | acetate kinase TERM 1011 1066846 - 1066860 + g 70 -10 -3.53444 | CGGCCTTGTTCTTGG CGACCA TCT TGGTCG TTTCGGCACCGATGC Daro_0975 1068406 - 1066988 - | bifunctional enoyl-CoA hydratase/phosphate acetyltransferase TERM 1012 1068260 - 1068248 - G 76 -9.1 -4.07568 | GCCGCTTTCCGAAAA CGTCG GAT CGACG ACCGCCGGGTTCAGG Daro_0976 1068991 - 1068512 - | hypothetical protein Daro_0977 1069571 - 1068996 - | hypothetical protein TERM 1013 1069581 - 1069633 + r 81 -9.1 -4.14392 | opp_overlap 1069586, overlap 1069590 GGCCATGATGGTCTC CGAAATGGCTACATGTTGGCGGGAA GAG TTCCCGCCAACATGGATTTAGCCCG TTTTGCCGGTTGGCC TERM 1014 1069628 - 1069586 - R 78 -10.6 -3.53444 | opp_overlap 1069581 1069590 TGATGGTCTCCGAAA TGGCTACATGTTGGCGGGAA GAG TTCCCGCCAACATGGATTTA GCCCGTTTTGCCGGT TERM 1015 1069590 - 1069624 + r 100 -20.2 -3.60818 | opp_overlap 1069586, overlap 1069581 GGTCTCCGAAATGGC TACATGTTGGCGGGAA GAG TTCCCGCCAACATGGA TTTAGCCCGTTTTGC Daro_0978 1070457 - 1069672 - | enoyl-(acyl carrier protein) reductase TERM 1016 1070175 - 1070159 - G 73 -4.4 -4.62069 | overlap 1070172 TCGGCATTGCAAAAA GCCATC GAATG AATGGC GAAATCGAGTTCGCC TERM 1017 1070401 - 1070412 + g 85 -3.6 -5.40072 | opp_overlap 1070399, overlap 1070399 GTCGTTGGCAATACC GGTC ACCA GGCC TTTTTTTCCAGCCAG TERM 1018 1070558 - 1070538 - H 74 -8.4 -3.86106 | opp_overlap 1070530 1070526 1070538 1070541, overlap 1070530 1070541 AGAGCAATTATTAAA TAATGCTG TGGTG CAGCATTA TTGTTGCACATCTAA TERM 1019 1070538 - 1070558 + H 73 -9.1 -3.64487 | opp_overlap 1070530 1070538 1070541, overlap 1070530 1070526 1070541 AGAGCAATTATTAAA TAATGCTGT GGT GCAGCATTA TTGTTGCACATCTAA TERM 1020 1070610 - 1070620 + H 74 -3.2 -5.00616 | TTCCTCGTCGAGAGG GCAG GTG TTGC TTTTTTGGAGGCCGC TERM 1021 1071638 - 1071650 + G 73 -4.7 -4.64844 | overlap 1071631 1071639 CGGCTTATGCGGTCG GCGCG ACC CGCGG TTTTGTCTATCTGCG Daro_0979 1070725 - 1072623 + | NADH dehydrogenase TERM 1022 1073262 - 1073240 - g 70 -3.2 -4.59773 | overlap 1073241 CGTGATCCTGAAAAA GCGCCAGGGC TTT GCCGTGCCGA TCGGCGAGCGCAAGT Daro_0980 1072620 - 1073327 + | ferredoxin Daro_0981 1073329 - 1073877 + | NADH ubiquinone oxidoreductase, 20 kDa subunit Daro_0982 1073887 - 1075350 + | nickel-dependent hydrogenase, large subunit Daro_0983 1075347 - 1075847 + | HoxW protein Daro_0984 1076989 - 1075844 - | phosphoserine aminotransferase Daro_0985 1078197 - 1076986 - | hypothetical protein TERM 1023 1077445 - 1077430 - G 100 -9 -4.8048 | opp_overlap 1077430 GCGTGACAGGAAAAA GGTCGA CTCA TCGACC TTGGCTAAATAGTCA TERM 1024 1078066 - 1078042 - G 75 -2.2 -4.87665 | gap 1, opp_overlap 1078059, overlap 1078043 1078044 GCCGATGCAGAAAAA TGCCGTGGATA GATT CATCCACAG-A TGGGCATTTTCCTCA TERM 1025 1079369 - 1079409 + G 73 -4.8 -4.63218 | gap 2, overlap 1079376 GAGGCGCGCATTCTG CTCGACGCCTTGCCGGGG CAGCCGA TCCCGGCAACG-GTC-AG TTTTGTTGCCCCGAA Daro_0986 1078634 - 1079620 + | secretion protein HlyD TERM 1026 1079912 - 1079924 + G 76 -9.1 -4.10657 | overlap 1079913 GGCAAGAATCTGTAC CCGAC GCT GTCGG TTTTCGAGAATGTCG TERM 1027 1081063 - 1081087 + G 93 -17.1 -3.28712 | GCATGCCGGCAAGGT GCTGGCCAGCG ATA CGCCGGCCAGC TTGTGCAAGACACGC Daro_0987 1079627 - 1082389 + | ABC-2:ABC transporter related Daro_0988 1082392 - 1083516 + | hypothetical protein TERM 1028 1083642 - 1083660 + G 85 -8.8 -4.69664 | overlap 1083641 1083640 CAGATATATCTTCAC GGCGGC TTCGGTC GCCGCC TTTTTGGGTGCTGTC Daro_0989 1083616 - 1084329 + | hypothetical protein TERM 1029 1084372 - 1084400 + F 100 -16 -3.53091 | opp_overlap 1084372 TCTGTTGCGTTTAAA CGAGCGCCGCAC TTGGC GTGGGGCGCTCG TTTGGGCGCAAAGCT TERM 1030 1084400 - 1084372 - f 100 -16 -3.53012 | opp_overlap 1084372 TCTGTTGCGTTTAAA CGAGCGCCGCAC TTGGC GTGGGGCGCTCG TTTGGGCGCAAAGCT Daro_0990 1084521 - 1084928 + | peptidylprolyl isomerase, FKBP-type TERM 1031 1084962 - 1084929 - T 71 -9 -3.53745 | gap 3, overlap 1084949 GACATTGCAAAGTAA GGCAA-GCGTCCG-CTG AAT CAGGCGG-CGCATTGCC CAGTTCATGCGTCGC Daro_0991 1085509 - 1085066 - | hypothetical protein TERM 1032 1085457 - 1085443 - G 72 -12.8 -3.00525 | overlap 1085438 CCTTGGCAAACGAGA CGGCGC GTT GCGCCG TGGCACGGGAAAGCT TERM 1033 1085654 - 1085666 + G 74 -5.5 -4.48741 | opp_overlap 1085654 GCACGCTCGTTGAAA CGGGT GAC ATCCG TTTTCTGGTCGATTG TERM 1034 1085744 - 1085762 + G 76 -6 -4.70583 | CGCTCAATTTTGGCT TCGATGTC CGC GAGATCGA TTTTGTCTTGCTGAC TERM 1035 1086151 - 1086141 - g 71 -8.2 -4.01419 | opp_overlap 1086141 1086136 CAGCAACGAAGGAAA GCCG CGT CGGC TGGTCTTTTCCGGTG Daro_0992 1085593 - 1087005 + | Beta-lactamase-like:RNA-metabolising metallo-beta-lactamase TERM 1036 1088036 - 1088063 + G 74 -11.4 -3.54424 | gap 1, opp_overlap 1088039, overlap 1088039 GCGTTTCGGCCAGGA CAAGGTGCCGGTG GCG CACTGG-ACCTTG TTTACGACCCTGACC Daro_0993 1087041 - 1088789 + | Alpha/beta hydrolase fold:Poly-beta-hydroxybutyrate polymerase, N-terminal TERM 1037 1088808 - 1088795 - f 80 -5.3 -4.94811 | GGAAAAATAAATAAA TGACA GAAC TGTCA CGGGCTAGTCGTTTT TERM 1038 1089472 - 1089482 + G 75 -2.4 -5.00884 | CGCTGGAGTCGCTCC GCCG TTC CGCC TTTTTTACCGGGAAT Daro_0994 1088877 - 1089500 + | hypothetical protein TERM 1039 1090144 - 1090116 - g 72 -11 -3.33815 | gap 1 ATGGGCTCCAACGAA GCCAAGCG-TCGC TGGT GCGAACGCGTGGC GCAGATGGATATCGA Daro_0995 1089519 - 1090259 + | Beta-lactamase-like Daro_0996 1090342 - 1090788 + | hemerythrin HHE cation binding region Daro_0997 1090785 - 1091012 + | hypothetical protein TERM 1040 1091046 - 1091078 + G 80 -3.2 -5.14563 | opp_overlap 1091052 1091053, overlap 1091052 1091065 1091067 AGCGGTGATGGCTTT CGAAAACGCACCGC CTTTT GCGGCGCCGTTGCG TTTTTTCCTGACGGC TERM 1041 1091982 - 1092000 + G 73 -4.4 -4.67904 | overlap 1091960 GCTGGTCTTCGGTGT GCTGCTCG TTG CTGGCGGC TTTTTGCCCTTCATC TERM 1042 1092189 - 1092222 + G 77 -10.9 -3.59979 | gap 1, overlap 1092190 1092190 GGCCACCGTTCCGTT CGCCGG-CTGGCTGGC CCG GCCGGCCGGACTGGCC TTTGCCGTGGCCAAC TERM 1043 1092190 - 1092221 + G 77 -14.4 -2.75844 | gap 1, overlap 1092189 1092190 GCCACCGTTCCGTTC GCCGG-CTGGCTGGC CCG GCCGGCCGGACTGGC CTTTGCCGTGGCCAA Daro_0998 1091026 - 1092324 + | hypothetical protein Daro_0999 1092321 - 1092701 + | invasion gene expression up-regulator, SirB Daro_1000 1094733 - 1092748 - | helix-turn-helix, Fis-type Daro_1001 1094999 - 1095427 + | cytochrome c550 TERM 1044 1096098 - 1096082 - g 76 -12.3 -3.41527 | CAAGGGGCAGGACAA GGCTGTC ATC GACAGCC CGCGCTTTGCCGAGC Daro_1002 1095417 - 1096265 + | hypothetical protein TERM 1045 1096811 - 1096826 + G 70 -3.2 -4.65895 | overlap 1096769 CCCGGTTGGCAAGCG GCCG CGCGGCAT CGGC TTTTTGCCTGACGGC Daro_1003 1096275 - 1097213 + | YVTN beta-propeller repeat-containing protein Daro_1004 1097210 - 1097743 + | cytochrome B561 TERM 1046 1097766 - 1097748 - f 83 -10.3 -4.0257 | opp_overlap 1097758, overlap 1097742 TCCAAAAATGAACAA CTGCTCC ATGGA GGAGCAG TGCAACTCTTCCTAA TERM 1047 1097857 - 1097832 - f 81 -6.1 -4.77757 | opp_overlap 1097836, overlap 1097836 CGTCAAAAATGAAAA CCAATGCCACC CTCG GGTGGCATTTT TATTAGTGGCTTGCT TERM 1048 1097853 - 1097836 - f 88 -11.3 -3.82764 | opp_overlap 1097836, overlap 1097832 AAAAATGAAAACCAA TGCCACC CTCG GGTGGCA TTTTTATTAGTGGCT TERM 1049 1097836 - 1097853 + F 100 -11.3 -5.14163 | opp_overlap 1097836 1097832 AAAAATGAAAACCAA TGCCACC CTCG GGTGGCA TTTTTATTAGTGGCT TERM 1050 1099361 - 1099386 + G 73 -9.7 -3.85698 | AGTGCTGTGCCGGTT TGCCGTTTCCG ATAA CGGAATTGGCA TTTCTCCCGAAAAGC Daro_1005 1098135 - 1099628 + | sensor histidine kinase TERM 1051 1099650 - 1099688 + T 100 -19.7 -3.61178 | overlap 1099649 CTTTCCTCGGCGGTT CCGACGGGGC-GCCGACGG CTC CTGTCGGCAGCCCC-TCGG TTTCGCATCGATGGC TERM 1052 1099700 - 1099712 + T 78 -9.1 -3.94877 | TCGGTTTCGCATCGA TGGCC TGC GGCCA TTCTTGTTGGGGAGT Daro_1006 1100114 - 1099776 - | cytochrome c, class I Daro_1007 1100500 - 1100129 - | hypothetical protein TERM 1053 1100554 - 1100533 - R 100 -12.9 -5.00616 | overlap 1100534 CGGTGTTTGAAAAAA TGGGGGCGG TTGC CCGCCCCCG AAGAGTTGCCCGCAA TERM 1054 1100553 - 1100534 - R 100 -16.4 -3.60048 | overlap 1100533 GGTGTTTGAAAAAAT GGGGGCGG TTGC CCGCCCCC GAAGAGTTGCCCGCA TERM 1055 1100679 - 1100710 + r 72 -8.1 -3.91541 | gap 1, opp_overlap 1100674 TTGCTTAGAAGAAGC CCAGCTTGGTTTCG CTGTA CGAAAC-AAGCAGG TTCTTCGTTTGCTGG Daro_1008 1102188 - 1100668 - | aldehyde dehydrogenase TERM 1056 1102600 - 1102637 + G 91 -5.6 -5.32599 | overlap 1102601 1102604 CTGCGTCGGCGTCTT TTGTTCATGGCAGTCT TTTTGT GGACTGTCATGATCGG TTTTTCTGTTTTCTG Daro_1009 1102570 - 1104537 + | response regulator receiver:ATP-binding region, ATPase-like:histidine kinase A, N-terminal Daro_1010 1104707 - 1106500 + | immunoglobulin-like TERM 1057 1106529 - 1106546 + F 79 -9.8 -3.75153 | opp_overlap 1106529 CACTGAAGGAACAAA GCCGGC CTGCGA GCCGGC TTTCCCTTGCCGGGA TERM 1058 1106546 - 1106529 - f 93 -10.5 -4.33621 | opp_overlap 1106529 CACTGAAGGAACAAA GCCGGCC TGCG AGCCGGC TTTCCCTTGCCGGGA Daro_1011 1106736 - 1107050 + | hypothetical protein TERM 1059 1107214 - 1107194 - gT 70 -11.1 -2.73124 | overlap 1107193 GCCGAGCCGGCAAAG CTCGCAGGC GAA GCCCGCAAG GCGCCACGCAAGCGG TERM 1060 1107452 - 1107468 + GT 75 -11.5 -2.87132 | GCGCCGCGTCCGCCT GCCGGGC TGC GCTCGGC TGTCTCCGAAAAGGC TERM 1061 1107530 - 1107481 - gT 95 -12.8 -4.07568 | gap 1, overlap 1107527 GGCTGTCTCCGAAAA GGCCG-CTGACCCGCTAGCCGCC AGCCA GGCCGCAAGCGGATCAAACCGCC TCCGGATTGGCGTAC TERM 1062 1107752 - 1107733 - gT 72 -10 -3.28712 | overlap 1107734 GTTCCTGCGTTACAA CGACCTGC TGCT GCAGGTCA ATGCGCCGATTGCCA TERM 1063 1107751 - 1107734 - gT 73 -11.3 -2.57132 | overlap 1107733 TTCCTGCGTTACAAC GACCTGC TGCT GCAGGTC AATGCGCCGATTGCC TERM 1064 1107911 - 1107893 - gT 70 -4.5 -4.56597 | opp_overlap 1107906 1107907 TGGGCGCTGGAAAAA CACGGAC GCTTT ATCCGCG AGCAGCGGCTTTCAT Daro_1012 1107017 - 1108021 + | hypothetical protein Daro_1013 1108311 - 1108054 - | hypothetical protein Daro_1014 1108525 - 1109085 + | hypothetical protein Daro_1015 1110721 - 1109150 - | major facilitator transporter TERM 1065 1109806 - 1109772 - G 77 -8.4 -4.41348 | overlap 1109773 CGTTGCCGAAACAAA TCCAGGTTGATCAGCG GGT CGCTGCGCAGCCTGGC GTGCCGGTAATACAG TERM 1066 1110012 - 1109998 - G 71 -7 -4.2074 | overlap 1109999 CCGGTAACAGATAAA TGGCGC ACA GCGCCG CAATGACGGCGAATG TERM 1067 1110742 - 1110759 + H 93 -12.7 -3.86194 | TACCCCGTTTTCGAG GCTGCCC GTCG GGGCAGC TTTCTCACCACCGTT TERM 1068 1111855 - 1111873 + G 74 -5.9 -4.45083 | ACGACCAGCGCCACG GCTACCG CGGGC CGGAAGC TTTTGTCGATCTGCC TERM 1069 1112732 - 1112677 - g 71 -5.4 -4.42386 | opp_overlap 1112681, overlap 1112678 1112680 1112712 GGCTGATCCAGAAAA TTACCGACGCCCACGGC-ACCGTGCT GTGGGA AGCACCGCCGCCGCCGGC-TCGGCAG GAGGAGCAACGGGCC Daro_1016 1110855 - 1113191 + | penicillin-binding protein 1A Daro_1017 1115431 - 1113392 - | helix-turn-helix, Fis-type TERM 1070 1113496 - 1113524 + g 72 -10.9 -3.33696 | overlap 1113486 1113497 GGGCCGCCATCGACA GGTTGCCGTGGCT GTT GGCCACGGCGGCA TTGATTGCGGCCCGC TERM 1071 1113497 - 1113523 + g 76 -14.4 -2.60075 | overlap 1113486 1113496 GGCCGCCATCGACAG GTTGCCGTGGCT GTT GGCCACGGCGGC ATTGATTGCGGCCCG TERM 1072 1114868 - 1114828 - G 70 -10.4 -3.55444 | gap 1, overlap 1114830 CCTTGACGCCGGAAA CATCGACGACGCCGAGCAG GTTC CTGCCCAGCGG-GTCGAGG ATGGGGGCAGCGGCA TERM 1073 1114866 - 1114830 - G 72 -11.6 -3.35597 | gap 1, overlap 1114828 TTGACGCCGGAAACA TCGACGACGCCGAGCAG GTTC CTGCCCAGCGG-GTCGA GGATGGGGGCAGCGG TERM 1074 1115772 - 1115811 + G 80 -10 -4.06419 | gap 1 GCAGTCAAGCGTACA GGTGATGGGCATCGATGCC GGC GGCA-CGATGACCGATACC TTCTTTGTCCGGGCC TERM 1075 1117216 - 1117232 + G 78 -10.8 -3.89614 | overlap 1117227 AAGGACGTTGTCGTC CCGGCC TGGGC GGCCGG TTTCTCGGCCTTCGG TERM 1076 1117294 - 1117308 + G 74 -11.4 -3.53012 | opp_overlap 1117284 GACAAGTCGGTCGAT CTGGGC GTT GCCCAG TTTGCCAGCGACGAG Daro_1018 1115746 - 1117893 + | acetone carboxylase, beta subunit Daro_1019 1117905 - 1120229 + | acetone carboxylase, alpha subunit Daro_1020 1120266 - 1120769 + | acetone carboxylase, gamma subunit TERM 1077 1120820 - 1120770 - f 70 -10.3 -3.14344 | gap 1, overlap 1120772 GAGCGGGTTGATTAA GAC-CTGAGCCTGGCGGGGAGCGA TTGC TCGCTCCCCGCTTGCCCCAAAGAC CAGAAGAGGGAACAG TERM 1078 1120817 - 1120772 - f 89 -13.9 -3.13403 | overlap 1120770 GCGGGTTGATTAAGA CCTGAGCCTGGCGGGGAGCGA TTGC TCGCTCCCCGCTTGCCCCAAA GACCAGAAGAGGGAA Daro_1021 1120842 - 1122233 + | butyryl-CoA:acetate CoA transferase TERM 1079 1122424 - 1122452 + T 95 -11.8 -4.29829 | opp_overlap 1122424 1122431, overlap 1122430 CGGAGGCGATAAAAA CAAAAAACGGCC ACGTA GGCCGGTTTTTG TTTCTTGCTGATTGT TERM 1080 1122452 - 1122424 - T 100 -11.8 -4.85599 | opp_overlap 1122424 1122430, overlap 1122431 CGGAGGCGATAAAAA CAAAAAACGGCC ACGTA GGCCGGTTTTTG TTTCTTGCTGATTGT TERM 1081 1122430 - 1122446 + T 100 -5 -5.48514 | opp_overlap 1122424 1122431, overlap 1122424 CGATAAAAACAAAAA ACGGCC ACGTA GGCCGG TTTTTGTTTCTTGCT TERM 1082 1122445 - 1122431 - T 100 -8.5 -5.98675 | opp_overlap 1122430 1122424, overlap 1122424 GATAAAAACAAAAAA CGGCC ACGTA GGCCG GTTTTTGTTTCTTGC Daro_1022 1122850 - 1122473 - | cytochrome c-552 precursor TERM 1083 1122914 - 1122889 - R 100 -18.3 -3.89212 | opp_overlap 1122884 1122881 GATTGAGACATGAAA TGCCGGACCGC TGAA GCGGCCCGGCA TGGTGATGCGTTTAG Daro_1023 1124707 - 1122926 - | Pyrrolo-quinoline quinone TERM 1084 1123499 - 1123522 + g 80 -11 -3.71888 | gap 1, overlap 1123499 1123505 CTTGCCATCGGCACT GG-CGTTCGGG TCG CCCGGACGGCC TTCTTCGATGTAGTT Daro_1024 1124972 - 1124724 - | hypothetical protein TERM 1085 1125225 - 1125279 + G 83 -16.3 -3.01712 | opp_overlap 1125254 AGCGGTGATCCGCTC GCCTCGGCGCGCTGGTCGGAAATGC AGAAG GCGTTCCTGGCCGGAGCGCCGGTGC TGTTCGACCCGCGGG TERM 1086 1125704 - 1125719 + G 80 -11.8 -3.71848 | GGATACCGGGCTGGT GGCCGG GACA CCGGCC TTCTTCCTGGAGGAG Daro_1025 1125132 - 1125902 + | hypothetical protein Daro_1026 1125899 - 1126837 + | Beta-lactamase-like Daro_1027 1126834 - 1127541 + | TonB, C-terminal TERM 1087 1127570 - 1127534 - f 88 -2.1 -5.59564 | opp_overlap 1127551, overlap 1127540 1127543 1127545 ACAAACTCAAAAAAA CAACATGAAGAGACAAG CCC CTCGTCGCAGCCTGCTG GCGATGGCTATTGCC TERM 1088 1129285 - 1129301 + G 78 -10.1 -3.90112 | opp_overlap 1129285 GGTATGCCAACTACA GCTGGCT GCA GGCCAGC TTTCGTTCCGAAGCC Daro_1028 1127538 - 1129847 + | TonB-dependent receptor Daro_1029 1129889 - 1131277 + | signal transduction histidine kinase, glucose-6-phosphate specific Daro_1030 1131274 - 1131921 + | two component LuxR family transcriptional regulator TERM 1089 1132552 - 1132571 + G 73 -10 -3.66178 | gap 1, opp_overlap 1132524 CGCAACGAGGGTCCG CTG-CCGGC CTG GCCGGACAG TTTGGCCTTGGCGAC Daro_1031 1131973 - 1132869 + | peptidase S33, proline iminopeptidase 1 Daro_1032 1133170 - 1133847 + | hypothetical protein TERM 1090 1134545 - 1134556 + G 81 -4.4 -5.0133 | AGCTATGCCCTCGGT GTGA TGAG TCAC TTTTTTCCGCCGCTG Daro_1033 1134257 - 1135360 + | hypothetical protein Daro_1034 1135366 - 1136013 + | DSBA oxidoreductase Daro_1035 1136162 - 1136638 + | hypothetical protein TERM 1091 1136661 - 1136679 + F 79 -2.3 -5.28983 | opp_overlap 1136651 1136649, overlap 1136649 1136663 AATCACCTTTCAGGC CAGTGCT CTGAA AGCGCGG TTTTTCTGTTTTCAG TERM 1092 1137244 - 1137223 - g 72 -2.2 -4.82901 | gap 1, overlap 1137224 CCTTCGTCAGAAAAA TGC-TGGCC GGCAT GGCCATGCG CCTGCATCAGCTGAT Daro_1036 1136793 - 1137530 + | cyclic nucleotide-binding TERM 1093 1137832 - 1137865 + T 93 -11.1 -4.42386 | opp_overlap 1137838 1137839, overlap 1137833 1137839 TCGTCGTCGATGCTG CCAAAAGGCCCATTC TTCG GAGTGGGCTTTTTGC TTTTCTAGGTCACCG TERM 1094 1137833 - 1137864 + T 95 -14.6 -3.2511 | opp_overlap 1137838 1137839, overlap 1137832 1137839 CGTCGTCGATGCTGC CAAAAGGCCCATTC TTCG GAGTGGGCTTTTTG CTTTTCTAGGTCACC TERM 1095 1137839 - 1137858 + T 100 -10 -5.1417 | opp_overlap 1137839 1137838, overlap 1137833 1137832 CGATGCTGCCAAAAG GCCCATTC TTCG GAGTGGGC TTTTTGCTTTTCTAG Daro_1037 1138886 - 1137870 - | Phage integrase Daro_1038 1139086 - 1138760 - | hypothetical protein Daro_1039 1140494 - 1139088 - | hypothetical protein TERM 1096 1140079 - 1140089 + g 75 -2.4 -4.87291 | AGGATGTAGGGGAAT AGCG ACG CGCC TTTTTCCTTCACCTC TERM 1097 1140546 - 1140585 + r 72 -7.9 -3.86822 | opp_overlap 1140545 1140537, overlap 1140553 AGATCAGGCCAACAG GAGCCCACCACCTCAAA TCAGCT TTTGAGGTGGTTGTATC TTTCTCGCCAGGTTG TERM 1098 1140553 - 1140578 + r 88 -12 -3.80279 | opp_overlap 1140545 1140537, overlap 1140546 GCCAACAGGAGCCCA CCACCTCAAA TCAGCT TTTGAGGTGG TTGTATCTTTCTCGC Daro_1040 1141346 - 1140558 - | hypothetical protein Daro_1041 1142045 - 1141410 - | hypothetical protein Daro_1042 1142420 - 1142118 - | hypothetical protein TERM 1099 1142829 - 1142862 + H 95 -11.1 -4.50976 | opp_overlap 1142835 1142836, overlap 1142830 1142836 TCGTCGTCGATGCTG CCAAAAGGCCCATTC TTCG GAGTGGGCTTTTTGC TTTTCTGGTCTGCCG TERM 1100 1142830 - 1142861 + H 100 -14.6 -3.30104 | opp_overlap 1142835 1142836, overlap 1142829 1142836 CGTCGTCGATGCTGC CAAAAGGCCCATTC TTCG GAGTGGGCTTTTTG CTTTTCTGGTCTGCC TERM 1101 1142836 - 1142855 + H 100 -10 -5.1417 | opp_overlap 1142836 1142835, overlap 1142830 1142829 CGATGCTGCCAAAAG GCCCATTC TTCG GAGTGGGC TTTTTGCTTTTCTGG TERM 1102 1143286 - 1143298 + G 74 -3.3 -4.8083 | AGAGTATTTTTCCAG CGCCT TCG AGGGG TTTTTGATCGTGTTG Daro_1043 1142987 - 1143949 + | cation efflux protein TERM 1103 1144119 - 1144073 - f 88 -12.3 -3.61398 | GGCGCTTGCGAATAA TTGTCTCCGGGGCAACAGAGG GGTTG CCTCGCCTACCCTGGAGACAA AATGACAAAGCACCT TERM 1104 1145225 - 1145241 + G 71 -5.8 -4.4078 | CTGGCTGGCGGTCGC CTGACC ACCAC GGTCGG TTTTGATTACGAGCA Daro_1044 1144121 - 1146301 + | TonB-dependent receptor:TonB box, N-terminal TERM 1105 1146342 - 1146326 - f 93 -15.1 -3.05384 | opp_overlap 1146326 TTCCCCCCTACCCAA GCCCGGC CGA GCCGGGC TTTTTTGTTGATTGC TERM 1106 1146326 - 1146342 + F 100 -15.1 -5.5604 | opp_overlap 1146326 TTCCCCCCTACCCAA GCCCGGC CGA GCCGGGC TTTTTTGTTGATTGC TERM 1107 1146995 - 1146979 - g 88 -13.7 -3.63515 | GCCGATCGGCAATAA TGCCGGC GGT GCCGGCA ACACCAATCCATACA Daro_1045 1146638 - 1147888 + | hypothetical protein TERM 1108 1147939 - 1147962 + F 100 -16.8 -5.96521 | TTCCTCGCATCTGTT CAGGACACCC TCCG GGGTGTCCTG TTTTTTTTCATTGCT Daro_1046 1148042 - 1148431 + | hypothetical protein Daro_1047 1149179 - 1148436 - | cyclic nucleotide-binding: regulatory protein, Crp Daro_1048 1149253 - 1150668 + | coproporphyrinogen III oxidase Daro_1049 1150733 - 1151404 + | hypothetical protein Daro_1050 1151419 - 1151844 + | hypothetical protein TERM 1109 1153796 - 1153812 + G 72 -2.2 -4.74801 | TTTAACATTGATACG CAGCGA CCTGC TCGGTG TTTTTGATGCAATTG Daro_1051 1151841 - 1154048 + | ATPase, E1-E2 type:copper-translocating P-type ATPase:heavy metal translocating P-type ATPase TERM 1110 1155433 - 1155413 - g 76 -13.3 -3.09933 | CTTGAATTGACCGAA CGCACCGTG ATG CACGATGCG GATATCAACATGGGC Daro_1052 1154045 - 1155802 + | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) Daro_1053 1155807 - 1156013 + | heavy metal transport/detoxification protein TERM 1111 1156238 - 1156252 + G 72 -2.8 -4.72986 | overlap 1156236 GCGCAGCAGGCGATT GTCG CGACGAC CGAC TTTTTCATGCCGATC Daro_1054 1156049 - 1157095 + | selenophosphate synthetase TERM 1112 1157141 - 1157117 - f 93 -11.5 -4.22554 | overlap 1157119 TGACGCAATAAACAA CACGTTTCTCA GTT TGAGAAACGGG CCTTCGGGCAAGTTG TERM 1113 1157139 - 1157119 - f 88 -12.7 -3.70444 | overlap 1157117 ACGCAATAAACAACA CGTTTCTCA GTT TGAGAAACG GGCCTTCGGGCAAGT TERM 1114 1157352 - 1157337 - g 74 -4 -4.79949 | opp_overlap 1157341, overlap 1157339 CTGTGAAAAAAAGAA TCTTGC CGGG GCAAAA GACCCGGATTGCCTG Daro_1055 1157324 - 1159486 + | TonB-dependent siderophore receptor Daro_1056 1159506 - 1160519 + | extracellular solute-binding protein TERM 1115 1160912 - 1160930 + G 70 -12.4 -2.9155 | overlap 1160909 TCAACGGTCACGCCA TCGTCGGC AAG GCCGGCGA TCTGGTGTTCACCAC Daro_1057 1160527 - 1161672 + | twin-arginine translocation pathway signal TERM 1116 1161717 - 1161698 - T 100 -15 -5.07652 | opp_overlap 1161698 1161715 GGGTGTAAAACAAAA CGGGAGCC AATC GGCTCCCG TTGTTCATGCTGACA TERM 1117 1161698 - 1161717 + T 100 -15 -3.75024 | opp_overlap 1161698, overlap 1161715 GGGTGTAAAACAAAA CGGGAGCC AATC GGCTCCCG TTGTTCATGCTGACA Daro_1058 1161950 - 1161747 - | BFD-like (2Fe-2S)-binding region Daro_1059 1162116 - 1162691 + | transmembrane protein Daro_1060 1162688 - 1163761 + | hypothetical protein TERM 1118 1163797 - 1163778 - T 100 -15 -5.42259 | TCAGGTGTAAAAAAA GCCGCAGC ATTC GCTGCGGC TGGCACGGGAGGCGT Daro_1061 1164301 - 1163819 - | bacterioferritin Daro_1062 1164796 - 1164311 - | bacterioferritin TERM 1119 1165759 - 1165734 - g 84 -9 -4.57569 | GGATGCGCGCAAAAA GGCGCTGC TGGCCCTGTT GCAGCGCC ACGATGTGCCGCTGA TERM 1120 1166125 - 1166141 + G 74 -5.7 -4.55287 | overlap 1166127 GGCACCCGTCTGGCC CGGCCGC TGG GCGGCTA TTTTCTCTGGCTGGA TERM 1121 1166127 - 1166139 + G 78 -10.5 -3.88698 | overlap 1166125 CACCCGTCTGGCCCG GCCGC TGG GCGGC TATTTTCTCTGGCTG Daro_1063 1164940 - 1166352 + | GntR family transcriptional regulator Daro_1064 1166655 - 1166347 - | hypothetical protein TERM 1122 1166441 - 1166426 - G 74 -6 -4.44974 | overlap 1166427 GTAAAGGCGATAAAA CCCCGG AGTA CCCGGG CAATAAAGGCGTGGG Daro_1065 1167264 - 1166659 - | putative denitrification protein NorE TERM 1123 1167046 - 1167028 - G 71 -8.8 -3.82604 | GCAGGCAATGAAGAA GCTGCTGG TCA CCATCAGC AAGGTAATGAGCGTT TERM 1124 1167584 - 1167598 + G 76 -5.7 -4.61482 | TGCGCTGGGTGATCG TCTGG CTGAC CCAGA TTGTTTTTTACGGCG TERM 1125 1167913 - 1167899 - g 85 -12.8 -3.74747 | TCAAGCTCGATCAAA GCCCGC TCA GCGGGC GCAAGATCCTGCTGC Daro_1066 1167469 - 1168824 + | 4Fe-4S ferredoxin, iron-sulfur binding Daro_1067 1169098 - 1168841 - | hypothetical protein Daro_1068 1171044 - 1169095 - | small GTP-binding protein domain-containing protein TERM 1126 1170449 - 1170429 - G 79 -9 -4.14627 | gap 1, opp_overlap 1170429 CGCCCAGATAAAGAA TGGCCAGCC CACG GGC-GGCCA TTTGCGGGTGCGGCG TERM 1127 1171062 - 1171099 + r 90 -13.3 -3.53811 | overlap 1171066 TCAATGGGTTCTGGC GTTGCGCTATGCCCGGC AGGT GCCGGGCCGAGCGTTAC TTTACGCCGGATCAC TERM 1128 1171066 - 1171095 + r 100 -14.9 -3.51232 | overlap 1171062 TGGGTTCTGGCGTTG CGCTATGCCCGGC AGGT GCCGGGCCGAGCG TTACTTTACGCCGGA Daro_1069 1172417 - 1171209 - | major facilitator transporter TERM 1129 1172192 - 1172175 - G 76 -6.3 -4.65895 | gap 1, overlap 1172177 1172178 CGCCCCACCGAAAAA TACCGGGC GAT GCCCG-TA GCGGCTGATCAACCG TERM 1130 1173368 - 1173339 - g 89 -12.2 -4.11692 | gap 1, overlap 1173359 CAGCGAGTTGGAAAA TGGCGGCGCAGTG CAAAC CACCGC-CCGCCA CTGCGGCTTCACCAA Daro_1070 1172458 - 1173453 + | transcriptional regulator TERM 1131 1173506 - 1173490 - T 100 -13.7 -4.15044 | opp_overlap 1173490 TCTTTGCGCAAGAAA GGCGGCT TGT AGCCGCC TTTCTGACCTCAAAT TERM 1132 1173490 - 1173506 + T 100 -13.7 -3.89524 | opp_overlap 1173490 TCTTTGCGCAAGAAA GGCGGCT TGT AGCCGCC TTTCTGACCTCAAAT Daro_1071 1176216 - 1173541 - | CheW protein Daro_1072 1176912 - 1176463 - | hypothetical protein TERM 1133 1177086 - 1177074 - R 70 -5.5 -4.42806 | TCAGCCTCAAACAAA GCCGA CGC TCAGC GTTCAAGTGAAGCGA Daro_1073 1177966 - 1177157 - | Alpha/beta hydrolase fold TERM 1134 1177622 - 1177642 + g 76 -5.4 -4.59773 | gap 1, opp_overlap 1177622 TACGGGCGAAAGAAG GGCGGCAGC AATC GCT-TCGCC TTTTTCGAGATAGCG Daro_1074 1178767 - 1177982 - | NUDIX hydrolase Daro_1075 1179189 - 1178779 - | membrane protein of unknown function Daro_1076 1179886 - 1179242 - | hypothetical protein Daro_1077 1181186 - 1179975 - | major facilitator transporter TERM 1135 1180125 - 1180104 - G 73 -9.4 -3.89822 | GAGCGAGGTGACAAA CCCGGCCA GCGTGG TGGCCAGG CCCATGGCCAGCGAT Daro_1078 1181922 - 1181458 - | thioesterase superfamily protein TERM 1136 1181850 - 1181890 + g 71 -7.6 -4.12188 | gap 1, overlap 1181851 TCTTGATCTGATGCC CCT-GCGCATTATTGCGGC CGCA GCCGTAGCAATGCGCCAGA TTTTCCGGGTAGTAA Daro_1079 1182934 - 1182242 - | two component transcriptional regulator Daro_1080 1185643 - 1182935 - | osmosensitive K+ channel signal transduction histidine kinase TERM 1137 1183915 - 1183905 - G 75 -8.2 -4.25104 | TCGGCGTGATCAAAA GCCC ACT GGGC AATACCCATGTCGAC Daro_1081 1186619 - 1185654 - | magnesium/cobalt transporter CorA Daro_1082 1187134 - 1186823 - | hypothetical protein Daro_1083 1187896 - 1187330 - | phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 TERM 1138 1187870 - 1187849 - G 95 -13.7 -4.08216 | overlap 1187853 CCACTGGCGGTAAAA GGGAGCGGA ACGG CCCGCTCCC CATCGCACTGTTTTA Daro_1084 1188725 - 1187907 - | hypothetical protein Daro_1085 1189318 - 1188743 - | K+ transporting ATPase, KdpC subunit Daro_1086 1191396 - 1189330 - | ATPase, E1-E2 type:potassium-translocating P-type ATPase, B subunit Daro_1087 1193193 - 1191415 - | potassium-transporting ATPase subunit A TERM 1139 1193480 - 1193460 - R 77 -6.9 -4.45168 | GGGGGAAAATATAAA GAAACGG TAAAAAT CCGTTTC AAATCCATGTGCTGA Daro_1088 1194102 - 1193806 - | hypothetical protein TERM 1140 1193918 - 1193947 + g 79 -8.5 -4.57837 | gap 1, overlap 1193919 ATCAGGAACAGGTCG TCGGGTTTGGCGGC AGC GCTGCC-AGCCCGC TTTTTGGCGAAATAT TERM 1141 1193919 - 1193946 + g 72 -12 -3.3422 | gap 1, overlap 1193918 TCAGGAACAGGTCGT CGGGTTTGGCGGC AGC GCTGCC-AGCCCG CTTTTTGGCGAAATA TERM 1142 1194159 - 1194174 + r 85 -10.4 -4.18018 | CGGCGCGCTGCTGTC CGTCGG CTGG CCGACG TTTTGGCTCAAGGAA Daro_1089 1194838 - 1194182 - | Crp/FNR family transcriptional regulator TERM 1143 1194649 - 1194639 - G 76 -5.4 -4.63218 | CTGGCTTCAAGAAAA CTCA GGT TGAG TTCCCGGTTGTCGCC Daro_1090 1195052 - 1195534 + | glutathione peroxidase Daro_1091 1195589 - 1195819 + | hypothetical protein Daro_1092 1196236 - 1195856 - | hypothetical protein Daro_1093 1196807 - 1196493 - | hypothetical protein Daro_1094 1196975 - 1197622 + | metal-dependent phosphohydrolase TERM 1144 1198051 - 1198064 + G 71 -5.9 -4.36914 | opp_overlap 1198051, overlap 1198052 TTACAGAAAACCGAA TCGGC CTGG GCCGG TTTTCTGAAGGACAA Daro_1095 1197820 - 1198581 + | hypothetical protein Daro_1096 1199949 - 1198750 - | major facilitator transporter TERM 1145 1199143 - 1199132 - G 71 -5.8 -4.3898 | AGGAGGCGGACAAAA TGCC GGGC GGCA AGGATGTACGACAGG TERM 1146 1199773 - 1199757 - G 72 -12.3 -3.02144 | CGAGCGGGCCGAACA TGGCCTG GGT CAGGCCA TAGGCGATGGCGAAC Daro_1097 1200969 - 1199965 - | luciferase-like Daro_1098 1201883 - 1200966 - | hypothetical protein Daro_1099 1203030 - 1201948 - | NADH:flavin oxidoreductase/NADH oxidase TERM 1147 1202211 - 1202231 + g 73 -10.4 -3.67864 | gap 1, opp_overlap 1202202 CGAAAGGCTTGCCCT CCGGCGTGC GGGT GC-CGCCGG TTTCGCCTTCGATTA TERM 1148 1202885 - 1202929 + g 73 -10.6 -3.65522 | gap 1 GCGACGATCAGGCCG GCCGTGGCGCGCTGGCGGTAG TACT CGACGGTCAGCGGGCCG-GGC TTGTTGCCCTCGATG TERM 1149 1203113 - 1203093 - R 100 -9.7 -5.02476 | ATAGGGTTCAAAAAA TGGCCGC TATGGAG GCGGCCA TTGACGTTTGCATGT Daro_1100 1203715 - 1203131 - | TetR family transcriptional regulator Daro_1101 1204351 - 1203749 - | hypothetical protein TERM 1150 1204118 - 1204084 - G 78 -7 -4.59342 | opp_overlap 1204112 TCCACCAGAAAGAAA CCCCGGTCCTCCAC GCGGCAT GCGGAGATCCCGGG GGGGCTTTGGCGATA TERM 1151 1204157 - 1204135 - G 76 -12.1 -3.28712 | opp_overlap 1204135 1204138, overlap 1204138 GGGCTTTGGCGATAA CAATAGGGG GCTGA CCCCTATTG TTATCGATCTGCGAG TERM 1152 1204135 - 1204157 + g 76 -12.1 -3.39327 | opp_overlap 1204135 1204138, overlap 1204138 GGGCTTTGGCGATAA CAATAGGGG GCTGA CCCCTATTG TTATCGATCTGCGAG Daro_1102 1204430 - 1205152 + | metal-dependent phosphohydrolase Daro_1103 1205241 - 1205633 + | glutaredoxin family protein Daro_1104 1206633 - 1205635 - | hypothetical protein TERM 1153 1207034 - 1207021 - R 78 -8.1 -4.32046 | GCGTGAAAAATGAAA GGGGA AAAA TCCCC GATACGCACGCCGCT TERM 1154 1207081 - 1207095 + r 81 -6.4 -4.83169 | ACGATACACATCATT TGTTGC AAT GCAGCA TTTTTCTGAGACAAT TERM 1155 1207150 - 1207168 + r 100 -11.7 -5.61596 | opp_overlap 1207146 CAAGAAATGGATTTA TGCCCGC CTAGA GCGGGCA TTTTTTTGTCCGGAT TERM 1156 1207261 - 1207238 - R 90 -4.6 -5.37345 | gap 1, overlap 1207241 CGCAAGGACAAAAAA GA-AGCCCG TCTAGTG CGGGCTCTC GGATGATTTGTCTCC TERM 1157 1207257 - 1207241 - R 81 -6.5 -4.75967 | overlap 1207238 AAGGACAAAAAAGAA GCCCG TCTAGTG CGGGC TCTCGGATGATTTGT Daro_1105 1208542 - 1207598 - | hypothetical protein TERM 1158 1208602 - 1208580 - H 71 -2.6 -5.00616 | opp_overlap 1208586, overlap 1208584 1208585 GCTGCGGCCAAAAAA CAATTGGGGT ATG AACCCTATCG TTATTGAAAATAAAT Daro_1106 1208606 - 1208854 + | hypothetical protein TERM 1159 1208870 - 1208882 + T 71 -9.1 -3.42069 | opp_overlap 1208865 1208870, overlap 1208868 GCTAGTTAAACGACA GGGGT CTG ACCCC TATTGTTGCGGTTGA Daro_1107 1210714 - 1208939 - | hypothetical protein TERM 1160 1209567 - 1209579 + g 73 -4.9 -4.59773 | opp_overlap 1209572, overlap 1209564 ACAGCTCTCTTTGGA TTGAA TCC TTCAA TTTTTACAACTGCAA Daro_1108 1212546 - 1210765 - | hypothetical protein TERM 1161 1210963 - 1210995 + g 70 -4 -4.65916 | overlap 1210965 1210983 CTTCTCCGCAAAGGT GATGTCGTCCTGGT AGGTC ACCGGGATGCCGGC TTTTCTTAGCGTGGC TERM 1162 1211545 - 1211565 + g 71 -7.5 -4.24002 | opp_overlap 1211558 GCGGTCGACCAGTTC GGCGGCG TAGATAT CGCTGCC TTTTCCGCTTTCCGG Daro_1109 1214021 - 1212630 - | putative regulatory protein Daro_1110 1214817 - 1214014 - | Iron permease FTR1 TERM 1163 1214517 - 1214536 + g 80 -3.4 -5.1356 | overlap 1214488 1214506 GTTCGGCATGCAGCA TGGCCTTC ATCT GCCGGCCA TTTTTCTTCATCCAC Daro_1111 1215177 - 1214845 - | hypothetical protein TERM 1164 1214944 - 1214929 - G 73 -4.6 -4.59773 | opp_overlap 1214939, overlap 1214936 TTTCATCGGGAAAAA CACCAG ACTG CGGGTG ACGCCGGGGGCGAGC Daro_1112 1216659 - 1215187 - | hypothetical protein TERM 1165 1216582 - 1216640 + g 83 -16.8 -2.64651 | CAGTTTTTGCAGCGT -TGCTGCGTCAGGT-GCGGCGAGGGCAGGC AGG GCCAGCCC-CGCCGCGACCAG-CGCAGCGG TCAGTTTGGCAAGTT Daro_1113 1217207 - 1216662 - | hypothetical protein Daro_1114 1217754 - 1217329 - | biopolymer transport protein ExbD/TolR Daro_1115 1218499 - 1217756 - | MotA/TolQ/ExbB proton channel TERM 1166 1217967 - 1217985 + g 100 -10.2 -5.00616 | GTCATGATCAGCGCT TCGCCGAC CGG GCCGGCGA TTTTTTCCAGCGCGG Daro_1116 1219141 - 1218503 - | TonB, C-terminal Daro_1117 1219421 - 1219245 - | hypothetical protein TERM 1167 1220066 - 1220084 + r 95 -11.7 -4.38712 | opp_overlap 1220066 TATGGCGCAAAAAAA GCCACGG GTTTG CCGTGGC TTTTCTGAGGGTGAC TERM 1168 1220084 - 1220066 - R 100 -11.7 -5.41143 | opp_overlap 1220066 TATGGCGCAAAAAAA GCCACGG GTTTG CCGTGGC TTTTCTGAGGGTGAC Daro_1118 1221926 - 1220106 - | helicase, C-terminal:DbpA, RNA-binding:DEAD/DEAH box helicase, N-terminal TERM 1169 1221018 - 1220972 - G 76 -13.7 -3.0792 | gap 1, overlap 1220962 GAATATCGTAGTTAA CGACGTGGCTGACGCGCGGTAC GTCG ATACCGCGGG-CGGCAACGTCG GTCGCAATGACGATG Daro_1119 1222922 - 1222128 - | hypothetical protein TERM 1170 1222372 - 1222383 + g 88 -2.2 -5.47218 | gap 1 CTTTGATGATCGCCG GC-GG CTT CCAGC TTTTTTTGGATAGGC Daro_1120 1223965 - 1222919 - | aldo/keto reductase TERM 1171 1223932 - 1223945 + g 72 -2.3 -4.82901 | GAACTTCGAAGTGGT TGCGC CCTA GCGGA TTTTTCTGGAAAGGA Daro_1121 1224317 - 1223985 - | hypothetical protein Daro_1122 1224425 - 1225063 + | hypothetical protein Daro_1123 1225078 - 1226085 + | phosphate transporter TERM 1172 1226110 - 1226132 + T 73 -12 -2.69947 | overlap 1226109 TCGTTGCCTTTACGC TCCTGCTGGC TCT GCTGGCAGGA CTTGTATGGAGGTTC Daro_1124 1226449 - 1226228 - | hypothetical protein TERM 1173 1226567 - 1226556 - g 83 -3 -5.27335 | TTCGGCAAAGAAAAA GAAT TCGA ATTC AAGTTTCCTGCCGGC Daro_1125 1226517 - 1226825 + | hypothetical protein greB 1226825 - 1227382 + | transcription elongation factor GreB TERM 1174 1229028 - 1229016 - f 72 -7.7 -3.86194 | AATGGTCGGTACAAA GGGTT GCC AACCC GCGAGGGGGAGCTAA TERM 1175 1229563 - 1229532 - f 76 -7.4 -4.2558 | opp_overlap 1229532 1229533, overlap 1229533 TATCCTCCACCAAAA CCCAAAGATAAGCA GTGG TGTTTATCTTTGGC TTTTGAGCAATCAAT TERM 1176 1229532 - 1229563 + F 81 -9.6 -4.09864 | opp_overlap 1229532 1229533, overlap 1229533 TATCCTCCACCAAAA CCCAAAGATAAGCA GTGG TGTTTATCTTTGGC TTTTGAGCAATCAAT TERM 1177 1229562 - 1229533 - f 74 -10.9 -3.15027 | opp_overlap 1229532 1229533, overlap 1229532 ATCCTCCACCAAAAC CCAAAGATAAGCA GTGG TGTTTATCTTTGG CTTTTGAGCAATCAA TERM 1178 1229533 - 1229562 + F 83 -13.1 -3.05597 | opp_overlap 1229533 1229532, overlap 1229532 ATCCTCCACCAAAAC CCAAAGATAAGCA GTGG TGTTTATCTTTGG CTTTTGAGCAATCAA TERM 1179 1230232 - 1230221 - f 72 -7.2 -4.2354 | GAAAGGCGAAAAGAA CCCC GGGA GGGG AGTGAAATAGAACCT TERM 1180 1232842 - 1232875 + F 100 -24.1 -2.90496 | opp_overlap 1232846, overlap 1232846 GCCAGACTCCCCATT CAAACCCCCGTTAGC ATAA GCTAACGGGGGTTTG TCGTTTACGCACCGA TERM 1181 1232846 - 1232871 + F 100 -19.1 -4.13654 | opp_overlap 1232846, overlap 1232842 GACTCCCCATTCAAA CCCCCGTTAGC ATAA GCTAACGGGGG TTTGTCGTTTACGCA TERM 1182 1232871 - 1232846 - f 100 -19.1 -3.6502 | opp_overlap 1232846 1232842 GACTCCCCATTCAAA CCCCCGTTAGC ATAA GCTAACGGGGG TTTGTCGTTTACGCA Daro_1127 1232979 - 1234889 + | heat shock protein 90 TERM 1183 1234916 - 1234935 + F 100 -12.8 -5.03314 | opp_overlap 1234915 1234914 TGGGCAATGAAGATG GGGCCGCC TTTG GGTGGCCC TTTTTTACGAGTGGA TERM 1184 1235494 - 1235484 - g 74 -6.8 -4.4009 | GCTGACGTGACAAAA GCCA TTC TGGC TCATCGCGCTTCGGA Daro_1128 1235133 - 1235621 + | hypothetical protein TERM 1185 1236223 - 1236237 + G 70 -3.5 -4.65895 | overlap 1236215 CCGGAAGGCATCGCC CTGCT GGCCA GGCAG TTTTTGCGTCAGCCC Daro_1129 1235629 - 1237029 + | ATP-dependent RNA helicase DbpA Daro_1130 1238436 - 1237096 - | hypothetical protein TERM 1186 1237677 - 1237702 + g 89 -11.1 -4.21194 | ACTCGACGGCCACGC CATCCAGGCGG GTCA TCGCCAGGATG TTTTCCGTGGTCAGA TERM 1187 1238349 - 1238302 - G 90 -14.8 -3.53012 | gap 1, overlap 1238303 CTTGCCTTGTGCAAA CTGGCGGGCGCCCTCGGCCAGCA TAT TGCCGGCC-ACGCCGCCGGCCAA TGAGCCCAGACGGGC TERM 1188 1238348 - 1238303 - G 79 -16.1 -2.71712 | gap 1, overlap 1238302 TTGCCTTGTGCAAAC TGGCGGGCGCCCTCGGCCAGCA TAT TGCCGGCC-ACGCCGCCGGCCA ATGAGCCCAGACGGG Daro_1131 1238773 - 1238426 - | hypothetical protein Daro_1132 1239333 - 1238788 - | hypothetical protein TERM 1189 1238825 - 1238840 + g 72 -11.8 -3.35371 | opp_overlap 1238812 AACGTCGTCGCTTGC CCGGCG GCGT CGCCGG TTGCTTGCCAGTCTG Daro_1133 1240212 - 1239340 - | hypothetical protein Daro_1134 1240809 - 1240267 - | hypothetical protein TERM 1190 1241788 - 1241815 + G 70 -9.8 -3.48288 | opp_overlap 1241796, overlap 1241796 CGGCAGTGCCCGCGT GGCAGCAACAGC ATTG GCTGTTTCGGCC TTCTGCTGTGCCTTG Daro_1135 1240964 - 1242130 + | major facilitator transporter Daro_1136 1243058 - 1242138 - | LysR family transcriptional regulator Daro_1137 1243160 - 1243912 + | hypothetical protein Daro_1138 1243953 - 1244165 + | hypothetical protein Daro_1139 1244490 - 1244855 + | response regulator receiver TERM 1191 1244916 - 1244932 + G 73 -10.8 -3.63464 | overlap 1244914 CGCCATGGTTGCGTT CGGCGC GGCAA GCGCCG TCTTCTTCTTTCACG Daro_1140 1244860 - 1246116 + | chemotaxis sensory transducer Daro_1141 1246128 - 1246433 + | Sulfate transporter/antisigma-factor antagonist STAS Daro_1142 1246451 - 1248676 + | CheW-like protein:ATP-binding region, ATPase-like:Signal transducing histidine kinase, homodimeric:Hpt Daro_1143 1248706 - 1250331 + | histidine kinase, HAMP region: chemotaxis sensory transducer TERM 1192 1250405 - 1250370 - g 80 -3.8 -5.13741 | gap 1 GCAAGCCAACAAAAA TGCTGCTGTTGCCACGG TAG CCGAGGCTCCAGCC-CA GTATCTGACCTTTTC Daro_1144 1250341 - 1250895 + | CheW-like protein Daro_1145 1250933 - 1251526 + | hypothetical protein Daro_1146 1251526 - 1252338 + | MCP methyltransferase, CheR-type TERM 1193 1252537 - 1252509 - g 77 -11.7 -3.61178 | opp_overlap 1252509 CTGACCGAGCGCAAA CGGCCACCCAATG CCG CACTGGATGGTCG TTTCGGCAGCGAAGC Daro_1147 1252335 - 1252847 + | chemotaxis protein Daro_1148 1252840 - 1253919 + | chemotaxis-specific methylesterase Daro_1149 1253933 - 1254769 + | putative signal transduction protein TERM 1194 1254859 - 1254817 - T 100 -25.9 -3.08679 | overlap 1254855 GGCCCTCATGGAACA GCCGGTTCGTACCTCAAAA TGCCT TCTTGAGGTACGAACCGGC TTCGGGCGAGAAAGT Daro_1150 1255468 - 1254905 - | hypothetical protein TERM 1195 1257066 - 1257055 - g 70 -3.6 -4.62069 | TCCGCATTGCAAAAA GCCG ACGC CGAC CACCGAGGATCAACG Daro_1151 1255520 - 1257388 + | type II secretion system protein E TERM 1196 1257725 - 1257751 + G 77 -11.6 -3.56643 | CGGTCAATAAATGGT TCATCGCCTCGC ATT GCAAGGTGATGA TTTCCAGCCTGTGGA TERM 1197 1258118 - 1258133 + G 71 -5.4 -4.36914 | gap 1, opp_overlap 1258113 1258112, overlap 1258113 1258107 TCGAGCAAATCGTGC CGCAGCA CGG TGC-GCG TTTTGTCGGCAAGCA Daro_1152 1257463 - 1258236 + | Beta-lactamase-like Daro_1153 1258696 - 1258253 - | hypothetical protein Daro_1154 1259693 - 1258677 - | hypothetical protein Daro_1155 1260322 - 1259690 - | DNA-(apurinic or apyrimidinic site) lyase Daro_1156 1260414 - 1261823 + | diguanylate cyclase with PAS/PAC sensor Daro_1157 1262885 - 1261812 - | radical SAM family protein Daro_1158 1263620 - 1262928 - | SoxR-reducing system protein RsxE TERM 1198 1263645 - 1263664 + r 76 -7.8 -4.18018 | overlap 1263646 1263657 CCTTGGCGCTCTTCG GCGCGAAC AGGC GTTCGCGG TTTTCGGTGGCGAAC TERM 1199 1263646 - 1263663 + r 75 -11.3 -3.10597 | overlap 1263645 1263657 CTTGGCGCTCTTCGG CGCGAAC AGGC GTTCGCG GTTTTCGGTGGCGAA Daro_1159 1264293 - 1263625 - | electron transport complex, RnfABCDGE type, G subunit Daro_1160 1265311 - 1264295 - | electron transport complex, RnfABCDGE type, D subunit TERM 1200 1264742 - 1264723 - G 74 -3.4 -4.84274 | overlap 1264725 CAACCAGACCAAAAA CCTCCGGG TTGG CCAGGATG CTGGAAACAGATGTG Daro_1161 1267027 - 1265315 - | electron transport complex protein RnfC TERM 1201 1265586 - 1265615 + g 95 -12.1 -4.26189 | gap 1 TCAGCCGCCTTTTTG GC-GGCCTGGGCAG CGG CTGCCTTGGCCAGC TTTTCGGCTTTCTCG Daro_1162 1267569 - 1267027 - | electron transport complex protein RnfB TERM 1202 1267440 - 1267460 + g 77 -3.2 -5.00616 | overlap 1267438 ATTGACCGCACTGGG TCTGAGGC AGCAG GCCTTCGA TTTTTTCGACCAGCG Daro_1163 1268150 - 1267566 - | electron transport complex, RnfABCDGE type, A subunit TERM 1203 1268038 - 1268049 + g 74 -5.8 -4.56597 | overlap 1268028 GCACCCATGCCGTAG GCTG TTTC CAGC TTTTTGGACACGCCC Daro_1164 1269266 - 1268223 - | dihydroorotate oxidase A TERM 1204 1270030 - 1270051 + G 76 -6.5 -4.56597 | overlap 1269986 1269984 1270031 TGGCGACGCCGGCTG ACCGTTTGC AGGC GCAGACGGC TTTTTCACAGGCCAC Daro_1165 1269411 - 1270799 + | Outer membrane efflux protein Daro_1166 1270796 - 1272034 + | secretion protein HlyD Daro_1167 1272034 - 1272741 + | ABC transporter related TERM 1205 1272734 - 1272722 - f 73 -9.1 -3.6608 | ATCACCTGACGGAAA GGCAG GGG CTGCC ATGCTGAAAGCCATG Daro_1168 1272735 - 1273955 + | hypothetical protein Daro_1169 1273952 - 1275211 + | aromatic-ring hydroxylase TERM 1206 1276223 - 1276247 + G 74 -7.2 -4.33153 | gap 1, opp_overlap 1276223, overlap 1276228 TCCTCGCTTTGAGAA TGACGCCGAGC GTTC GCTCGGT-TCA TTTCTTGATCTTGCC TERM 1207 1276228 - 1276243 + G 76 -10.4 -3.71527 | opp_overlap 1276223, overlap 1276223 GCTTTGAGAATGACG CCGAGC GTTC GCTCGG TTCATTTCTTGATCT Daro_1170 1275267 - 1276685 + | TPR repeat-containing protein TERM 1208 1276731 - 1276757 + T 78 -10.8 -3.55444 | GATTCCAGGCGATAC CCAGCCAGGCAA CGG TTGCCTGACGGG TTTCCACGATCGGAC Daro_1171 1277481 - 1276711 - | MltA-interacting MipA Daro_1172 1278716 - 1277502 - | Beta-ketoacyl synthase TERM 1209 1278053 - 1278065 + g 71 -9.1 -3.72893 | opp_overlap 1278050 CTTCGCCAAGGACCA GACCG GAG CGGTC TTTGCTAAACGGCTG Daro_1173 1278952 - 1278713 - | phosphopantetheine-binding Daro_1174 1279844 - 1279026 - | hypothetical protein Daro_1175 1280359 - 1279913 - | putative signal peptide protein TERM 1210 1280478 - 1280488 + H 70 -4.6 -4.52589 | opp_overlap 1280470, overlap 1280470 GACCAAAGCTTGCCC GGCG GCT TGCC TTTTGTCTCCGGCCC TERM 1211 1281750 - 1281726 - g 78 -13.5 -3.25491 | overlap 1281713 1281727 AACCGACACCACCAA CGCCCTGGCCG ATG CGGCCAAGGCC CGAGCCGCCTGGGCG TERM 1212 1281749 - 1281727 - g 83 -17 -2.54812 | overlap 1281726 1281713 ACCGACACCACCAAC GCCCTGGCCG ATG CGGCCAAGGC CCGAGCCGCCTGGGC Daro_1176 1280506 - 1281795 + | Outer membrane efflux protein Daro_1177 1281792 - 1282985 + | secretion protein HlyD TERM 1213 1283013 - 1283028 + G 82 -9 -4.36554 | TTTCTCGACTTTTGT CATCCG GCAG CGGATG TTTATTCTGGTGATG TERM 1214 1283262 - 1283274 + G 71 -7.7 -4.07687 | TACTGGGCTGTCGGT GGTCA CCC TGACC TTTTCGGAGGGCACT TERM 1215 1285207 - 1285241 + G 78 -9.9 -3.85698 | opp_overlap 1285204, overlap 1285208 GATCTCGACAATGCG GTGCAGACGGCGCTG GGCGG CAGTGCCGTCGGCGG TTTCTACGAAGGCGA TERM 1216 1285208 - 1285240 + G 75 -13.4 -2.91276 | opp_overlap 1285204, overlap 1285207 ATCTCGACAATGCGG TGCAGACGGCGCTG GGCGG CAGTGCCGTCGGCG GTTTCTACGAAGGCG Daro_1178 1282987 - 1286088 + | heavy metal efflux pump CzcA Daro_1179 1286225 - 1286842 + | hypothetical protein TERM 1217 1286905 - 1286934 + F 72 -6.3 -4.42386 | opp_overlap 1286912, overlap 1286906 1286907 GTTTCTTGGGAGCAC CACGGAAGGCTCC TGTG GGAGCCTTCCACC TTTTCTGACTGGCAA TERM 1218 1286906 - 1286933 + F 70 -9.8 -3.2511 | opp_overlap 1286912, overlap 1286905 1286907 TTTCTTGGGAGCACC ACGGAAGGCTCC TGTG GGAGCCTTCCAC CTTTTCTGACTGGCA TERM 1219 1286907 - 1286932 + F 81 -13.3 -2.54745 | opp_overlap 1286912, overlap 1286906 1286905 TTCTTGGGAGCACCA CGGAAGGCTCC TGTG GGAGCCTTCCA CCTTTTCTGACTGGC Daro_1180 1287020 - 1287685 + | two component transcriptional regulator TERM 1220 1288813 - 1288831 + G 100 -13.8 -4.38712 | TCACTGTCCGCAGCG GGCTGGCC GAT GGCCGGCC TTTTATCGAGGTCGA Daro_1181 1287675 - 1289084 + | sensor histidine kinase Daro_1182 1289652 - 1289149 - | hypothetical protein Daro_1183 1290119 - 1289646 - | ankyrin TERM 1221 1290258 - 1290232 - R 95 -9.4 -4.93877 | GGGTACCAAAGAAAA CGCCCCGC AGGCAGGATGG GCGGGGCG TCGAGTCTCGGTTCC Daro_1184 1292144 - 1290279 - | K+ potassium transporter TERM 1222 1290344 - 1290354 + g 73 -4.6 -4.59773 | GGAAGAAGTCGCTGG CGCT GGT GGCG TTTTTCGACATGACG TERM 1223 1290861 - 1290851 - G 71 -8.2 -4.0825 | CGGTGAAGGAAACAA GGCC CAT GGCC AGCGGGAACCAGCCG TERM 1224 1291249 - 1291229 - G 70 -10.5 -3.54638 | AGAAGGCGCCGGAAA TCACTGCCT GCG AGGCAATGA CGGTGGCGGCGGTGG TERM 1225 1292154 - 1292174 + H 100 -7.5 -5.26119 | overlap 1292156 1292158 CGACATGTATTCCCC TGTTGCGCC GGT GGCGCTATA TTTTATTTTTACCAA TERM 1226 1292156 - 1292172 + H 76 -7.9 -4.25502 | overlap 1292154 1292158 ACATGTATTCCCCTG TTGCGCC GGT GGCGCTA TATTTTATTTTTACC TERM 1227 1292158 - 1292170 + H 81 -10.5 -3.69867 | overlap 1292156 1292154 ATGTATTCCCCTGTT GCGCC GGT GGCGC TATATTTTATTTTTA TERM 1228 1292214 - 1292196 - H 79 -10.3 -3.78329 | TTTTACCAATGCAAA GCCGGTT TCGGG AACCGGC AGCGCAATCTGGCAA Daro_1185 1292306 - 1292584 + | acylphosphatase Daro_1186 1292996 - 1293796 + | phytochelatin synthase-like protein Daro_1187 1294335 - 1293793 - | hypothetical protein Daro_1188 1294886 - 1294392 - | hypothetical protein TERM 1229 1294682 - 1294707 + g 72 -12.5 -3.01712 | opp_overlap 1294682 CGAGCGACTGGAACA GGCTTGCCGCG CGGT CGCGGCAGGAC TCTTCGCGGAGCAGG Daro_1189 1295736 - 1294891 - | hypothetical protein Daro_1190 1296348 - 1295743 - | hypothetical protein TERM 1230 1296389 - 1296368 - R 72 -5.1 -4.56597 | overlap 1296385 GTGGCTCCCGAAAAA TGGTTCGCT GCCA AGCATACCA TCGTGATATTTCCGG TERM 1231 1296481 - 1296471 - R 72 -8.2 -3.76373 | overlap 1296472 TGGTCAACATTGAAA CCGG CAC CCGG CCGTCTCAGGGCTTT Daro_1191 1296936 - 1296487 - | MaoC-like dehydratase Daro_1192 1297930 - 1296986 - | putative poly-gamma-glutamate biosynthesis enzyme TERM 1232 1297309 - 1297326 + g 84 -10.5 -4.19735 | GGGCCAGGGTTCTTT GCCGCTC GTCG GGGCGGC TTTCCTTTTCCCAGC Daro_1193 1298382 - 1297990 - | hypothetical protein TERM 1233 1298446 - 1298433 - R 73 -9.5 -3.57561 | opp_overlap 1298433 1298433 1298434 CCGGAATGCTTGAAA GCCGG GCCG CCGGC TCGTTCCGGCGGGAG Daro_1194 1299166 - 1298480 - | hypothetical protein Daro_1195 1299906 - 1299163 - | arginyl-tRNA-protein transferase aat 1300613 - 1299909 - | leucyl/phenylalanyl-tRNA--protein transferase TERM 1234 1300496 - 1300484 - G 75 -7.7 -4.27316 | overlap 1300486 1300487 TGCCCCAAGGGAAAA TACCG CGC CGGTA GGCGTCGAGCAGGCG Daro_1197 1301689 - 1300610 - | ABC transporter related TERM 1235 1300653 - 1300674 + g 93 -8 -5.02074 | opp_overlap 1300653 AAGGCAATGACATGA TCGGCGTC GAGCCG GATGCCGA TTTTTTCGCCAATCG TERM 1236 1302542 - 1302581 + G 80 -10.5 -4.08216 | opp_overlap 1302535 1302528 1302526, overlap 1302574 ACCACGAACCGTAGC CGGCCGATGGCCGGTGC CCGGTT GCGCGGCCCGGCGGCCG TTTTGGCCACGCTGG TERM 1237 1302959 - 1302937 - g 76 -12.6 -3.28791 | opp_overlap 1302925 ATGGTTCGGCCATAA CCCCGGCCTG CTG CTGACCGGGG GCATCGCGGCACTGA Daro_1198 1301720 - 1303357 + | binding-protein dependent transport system inner membrane protein Daro_1199 1303954 - 1303382 - | ankyrin TERM 1238 1303651 - 1303683 + g 76 -9.2 -4.08823 | gap 2, overlap 1303647 1303678 CGAGGCCTTCGGGAA TCGCCGCCCCTTGCTG AAG CAGCA-GG-GCGACGA TTTCGTTGTGTTCAT Daro_1200 1305031 - 1304018 - | extracellular solute-binding protein TERM 1239 1305142 - 1305127 - R 100 -10.4 -5.47218 | opp_overlap 1305127 TTGGACGTAAAAAAA GCGGCT GTTT AGCCGC TTGGTTCAGTTGACT TERM 1240 1305127 - 1305142 + r 72 -10.4 -3.40788 | opp_overlap 1305127 TTGGACGTAAAAAAA GCGGCT GTTT AGCCGC TTGGTTCAGTTGACT Daro_1201 1305657 - 1305148 - | NLP/P60 Daro_1202 1305779 - 1306774 + | zinc-containing alcohol dehydrogenase superfamily protein TERM 1241 1307456 - 1307473 + G 79 -8.3 -4.57341 | overlap 1307444 GTTTGCCGTCGTTTC GCCGGGG ACGG CGCCGGC TTTTTGCGCGACGTT Daro_1203 1306776 - 1307897 + | response regulator receiver modulated diguanylate cyclase TERM 1242 1308145 - 1308117 - g 72 -10.9 -3.29461 | opp_overlap 1308141, overlap 1308118 CAATCTGTGCCATAA CGCGGTTGACCGC CAT GCGGCCAAGCGCC CGAACGACCGTGCGC TERM 1243 1308144 - 1308118 - g 76 -14.4 -2.57463 | opp_overlap 1308141, overlap 1308117 AATCTGTGCCATAAC GCGGTTGACCGC CAT GCGGCCAAGCGC CCGAACGACCGTGCG Daro_1204 1307947 - 1309839 + | propionyl-CoA synthetase TERM 1244 1309887 - 1309862 - f 100 -20.5 -3.33696 | opp_overlap 1309862 TTGTGCTTGAACTAA GGCCCGCCGAT GAAA ATCGGCGGGCC TTTTTATTGCGCCAC TERM 1245 1309862 - 1309887 + F 100 -20.5 -5.06414 | opp_overlap 1309862 TTGTGCTTGAACTAA GGCCCGCCGAT GAAA ATCGGCGGGCC TTTTTATTGCGCCAC TERM 1246 1310147 - 1310161 + G 71 -7.8 -4.07687 | TCAGGTACGGGCGAT CGATGC GCT GCGTCG TTTTGGCGAACGACT Daro_1205 1309935 - 1311473 + | Ppx/GppA phosphatase Daro_1206 1311470 - 1312576 + | hypothetical protein Daro_1207 1312573 - 1313328 + | ABC transporter related Daro_1208 1313338 - 1314264 + | hypothetical protein TERM 1247 1314752 - 1314740 - g 73 -4.7 -4.58395 | opp_overlap 1314746, overlap 1314741 TTGAGTCTTGAAAAA CCGGC ACC GTCGG CGGATGCACGCGGTG Daro_1209 1314266 - 1314871 + | putative lipoprotein Daro_1210 1315491 - 1314868 - | regulatory protein, TetR TERM 1248 1314998 - 1314960 - G 76 -5.8 -4.64766 | opp_overlap 1314972, overlap 1314962 1314964 GCGACAGGCCAAAAA CACAGGCGTAGAGCAGCA GGC TGCGGCTCTTGGCCTCGG CATCGGACATTCCTG Daro_1211 1315607 - 1316356 + | electron transfer flavoprotein subunit beta Daro_1212 1316369 - 1317301 + | electron transfer flavoprotein beta-subunit:electron transfer flavoprotein, alpha subunit TERM 1249 1317331 - 1317388 + GF 100 -22.2 -3.39908 | overlap 1317332 1317333 TCTGACTGATACCCT GCTGGGCGAAGCGTGGTA-CTGGACGGC TTGG GCCGTCTGGCTACCGCTCTTCGCCC-GC TGTGTTTTAAGGGCA TERM 1250 1317332 - 1317390 + GF 88 -12.6 -3.63744 | gap 3, overlap 1317331 1317333 CTGACTGATACCCTG C--TGGGCGAAGCGTGGTA-CTGGACGGC TTGG GCCGTCTGGCTACCGCTCTTCGCCCGCTG TGTTTTAAGGGCACC TERM 1251 1317333 - 1317387 + GF 100 -22.3 -2.63623 | gap 1, overlap 1317331 1317332 TGACTGATACCCTGC TGGGCGAAGCGTGGTA-CTGGACGGC TTGG GCCGTCTGGCTACCGCTCTTCGCCCG CTGTGTTTTAAGGGC Daro_1213 1317311 - 1317976 + | integral membrane protein TERM 1252 1318252 - 1318242 - gf 80 -3.2 -5.02074 | opp_overlap 1318244, overlap 1318243 1318246 CCATGGTTGAAAAAA GCCA CCC TGAC TATCCGTAAGGGGGT Daro_1214 1317948 - 1319780 + | hypothetical protein TERM 1253 1321321 - 1321341 + G 70 -3.2 -4.67354 | gap 1, opp_overlap 1321320 1321319, overlap 1321319 CAGCGAGCCAAAAGC GGCGCATGC CGGT GCG-GTGCC TTTTCTGTATCTATT Daro_1215 1319786 - 1321567 + | Acyl-CoA dehydrogenase, C-terminal:Acyl-CoA dehydrogenase, central region TERM 1254 1321594 - 1321621 + F 91 -11.4 -4.14392 | opp_overlap 1321594 CAGCTTTCTCCTAAA GCCCGAGATTGT TGTT ATAATCTTGGGC TTTTCCACCTTGCCC rpsF 1321681 - 1322064 + | 30S ribosomal protein S6 Daro_1217 1322134 - 1322418 + | primosomal replication protein N Daro_1218 1322390 - 1322665 + | SSU ribosomal protein S18P TERM 1255 1322874 - 1322851 - g 71 -6.6 -4.19238 | opp_overlap 1322871, overlap 1322867 CGCCGAACTGGAAAA GCTGGCTGCT GAAA AGCTGGCAGC TGCCCAGGCTGTTGC Daro_1219 1322684 - 1323130 + | 50S ribosomal protein L9P TERM 1256 1323174 - 1323155 - f 100 -15 -4.46212 | opp_overlap 1323155 CGTCTCACGACAAAA GGCCTCGC AGTA GCGAGGCC TTTTTACTTTAAACT TERM 1257 1323155 - 1323174 + F 100 -15 -4.99134 | opp_overlap 1323155 CGTCTCACGACAAAA GGCCTCGC AGTA GCGAGGCC TTTTTACTTTAAACT Daro_1220 1323197 - 1324606 + | primary replicative DNA helicase Daro_1221 1325910 - 1324612 - | transglutaminase-like TERM 1258 1325775 - 1325785 + g 78 -2.4 -5.06414 | CTGACGAAGCCTTCC CGGC AGC GCCC TTTTTCTTGGCGCCC TERM 1259 1325950 - 1325974 + r 72 -9.9 -3.34344 | opp_overlap 1325952, overlap 1325951 1325972 CGTGGCTGAAACGAA AAGGCCGTGTC ACT GACACGGCCCC TTAATTGAAGGGTCG TERM 1260 1325951 - 1325973 + r 81 -13.4 -2.60392 | opp_overlap 1325952, overlap 1325950 1325972 GTGGCTGAAACGAAA AGGCCGTGTC ACT GACACGGCCC CTTAATTGAAGGGTC TERM 1261 1325972 - 1325952 - R 100 -16.9 -4.54727 | opp_overlap 1325951 1325950 TGGCTGAAACGAAAA GGCCGTGTC ACT GACACGGCC CCTTAATTGAAGGGT Daro_1222 1327418 - 1325991 - | PhoH-like protein Daro_1223 1327940 - 1327452 - | Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen Daro_1224 1327942 - 1330146 + | extracellular solute-binding protein Daro_1225 1330143 - 1331315 + | hypothetical protein Daro_1226 1331961 - 1331293 - | phosphoglycolate phosphatase Daro_1227 1332652 - 1331954 - | 3-demethylubiquinone-9 3-methyltransferase TERM 1262 1332239 - 1332217 - G 74 -7 -4.34402 | overlap 1332219 GCGTGGACAGGAAAA CCTGGCCA CCCGGCT TGACCAGG CGGGCGCAGGCCGTG TERM 1263 1332687 - 1332704 + r 95 -12.7 -4.18018 | opp_overlap 1332687 GACGGAAAAGAAAAA GCCCTGC CAAG GCAGGGC TTTTCGGTGAAGCGA TERM 1264 1332704 - 1332687 - R 100 -12.7 -5.48213 | opp_overlap 1332687 GACGGAAAAGAAAAA GCCCTGC CAAG GCAGGGC TTTTCGGTGAAGCGA Daro_1228 1333386 - 1332727 - | OmpA/MotB Daro_1229 1334777 - 1333443 - | N-ethylammeline chlorohydrolase TERM 1265 1335388 - 1335337 - g 76 -8.7 -4.08216 | overlap 1335300 CGATGGTTCCGAAAA CGAGCCGCTGGTCATGCCGG-CGCG TATC CCCAACCTGC-TGATCAACGGCTCG TCCGGTATCGCGGTG Daro_1230 1334876 - 1337515 + | DNA gyrase subunit A Daro_1231 1337515 - 1338600 + | phosphoserine aminotransferase Daro_1232 1338605 - 1339696 + | prephenate dehydratase Daro_1233 1339707 - 1340795 + | histidinol-phosphate aminotransferase Daro_1234 1340800 - 1341669 + | prephenate dehydrogenase TERM 1266 1341997 - 1342023 + G 75 -8.6 -4.19953 | AGGTTCCGGATGATG CCGGGTGGCGCG AAG TGCGCTACATGG TTTTCGAGTTGCCTG Daro_1235 1341669 - 1342508 + | DNA ligase Daro_1236 1342602 - 1343606 + | UDP-galactose 4-epimerase Daro_1237 1343631 - 1344695 + | dTDP-glucose 4,6-dehydratase Daro_1238 1344695 - 1345585 + | glucose-1-phosphate thymidylyltransferase TERM 1267 1346068 - 1346102 + G 83 -5.1 -5.14163 | gap 2, overlap 1346069 CCCATTGAGGGGGGG GCG-CTGCTAT-CTGTC AAA GACAGTATGGCAGACGA TTTTTGTTGGTAGGT Daro_1239 1345582 - 1346115 + | dTDP-4-dehydrorhamnose 3,5-epimerase Daro_1241 1346811 - 1347182 + | hypothetical protein TERM 1268 1348685 - 1348702 + G 71 -6.3 -4.37092 | gap 1, opp_overlap 1348684 1348685 1348700 GGCTGCTCACAGAAT TGG-CTGG GTA CCAGACCA TTTTCTAAACGGAGT Daro_1242 1347532 - 1348710 + | DegT/DnrJ/EryC1/StrS aminotransferase TERM 1269 1348804 - 1348830 + G 71 -6.5 -4.19276 | TCTGGCACCATGTGA GTCCACACCGC AAGGG GCAGTTTGGAC TTTTGGCGCTTTTGA TERM 1270 1348880 - 1348895 + G 81 -5.4 -4.74453 | gap 1, overlap 1348880 GGAAATATTCAGTTT GGG-AGC TTT GCTTCCC TTTTTGGGTGTATTG TERM 1271 1349038 - 1349051 + G 74 -3.7 -4.8048 | CAGTGCTTGCAGCTA CCGGC ATAC GCCTG TTTTTGGTCTGGGCC Daro_1243 1348725 - 1349291 + | hypothetical protein Daro_1244 1349288 - 1350226 + | aldo/keto reductase TERM 1272 1350325 - 1350293 - g 79 -8.6 -4.49958 | gap 1, opp_overlap 1350301, overlap 1350296 1350301 AGGTTATGAAAGAAA TTAGTGAACAGCCCA TGAT TGGGCTGTT-ACTCA AACGCTTGTCTCGGT TERM 1273 1352085 - 1352071 - g 71 -7.8 -4.10453 | GAAATGCTGGCAAAA GGCTAC CTG GCAGCC AATAGCGTCTATGTC Daro_1245 1350223 - 1352250 + | aminotransferase Daro_1246 1352259 - 1353338 + | surface polysaccharide biosynthesis protein, transferase TERM 1274 1353559 - 1353586 + G 74 -7 -4.38712 | gap 1, overlap 1353558 CTTTACCGAATATCG GCCCCACCAAGGT ATG GCCTTT-TGGGGC TTTTATCGCGATCCC Daro_1247 1353341 - 1354597 + | GCN5-related N-acetyltransferase Daro_1248 1354594 - 1355640 + | N-acetylneuraminate synthase Daro_1249 1355633 - 1356304 + | LmbE-like protein TERM 1275 1357607 - 1357592 - g 71 -6.8 -4.16943 | gap 1 CTCCAGAGTGGAAAA CGC-GGC TGC GCCTGCG CCCTCACTACGAAGA Daro_1250 1356301 - 1358064 + | hypothetical protein Daro_1251 1358061 - 1359599 + | polysaccharide biosynthesis protein TERM 1276 1359754 - 1359742 - f 71 -3.3 -4.82901 | overlap 1359743 CGCTCCCCATAAAAA TCGAG TCA CTCGC TAACAGCGCTGGGGA TERM 1277 1360019 - 1360031 + G 84 -9.1 -4.46073 | opp_overlap 1360018 CGGAGATCAGGCAAT TGCGC TGC GCGCA TTTATTCTATTCAGC TERM 1278 1360746 - 1360770 + G 83 -4.2 -5.01732 | gap 1, overlap 1360747 TTTGGTCACGGCATC ACTGGCT-CCC TCTC GGGCAGCCGGC TTTTTTCGGACGATT Daro_1252 1359936 - 1361120 + | hypothetical protein Daro_1253 1361215 - 1361982 + | hypothetical protein Daro_1254 1361979 - 1363175 + | glycosyl transferase, group 1 TERM 1279 1363200 - 1363229 + G 80 -11.3 -3.76224 | opp_overlap 1363201, overlap 1363201 CACTGACGCGAGCCA ACCGCGCCCCGTG ACCG TACTGGGCGCGGG TTTCATCGGTCGAAA TERM 1280 1363201 - 1363228 + G 79 -14.8 -2.8552 | opp_overlap 1363201, overlap 1363200 ACTGACGCGAGCCAA CCGCGCCCCGTG ACCG TACTGGGCGCGG GTTTCATCGGTCGAA TERM 1281 1363228 - 1363201 - g 76 -14.1 -3.06915 | opp_overlap 1363201 1363200 ACTGACGCGAGCCAA CCGCGCCCCGT GACCGT ACTGGGCGCGG GTTTCATCGGTCGAA Daro_1255 1363165 - 1364142 + | NAD-dependent epimerase/dehydratase:3-beta hydroxysteroid dehydrogenase/isomerase Daro_1256 1364182 - 1364955 + | nucleotidyl transferase Daro_1257 1364952 - 1366049 + | NAD-dependent epimerase/dehydratase:polysaccharide biosynthesis protein CapD Daro_1258 1366037 - 1366513 + | dTDP-4-dehydrorhamnose epimerase Daro_1259 1366510 - 1367442 + | NAD-dependent epimerase/dehydratase:3-beta hydroxysteroid dehydrogenase/isomerase Daro_1260 1367439 - 1368368 + | glycosyl transferase family protein Daro_1261 1368365 - 1369573 + | glycosyl transferase, group 1 Daro_1262 1369570 - 1370787 + | glycosyl transferase, group 1 TERM 1282 1370879 - 1370900 + G 88 -6.5 -5.00616 | gap 1, opp_overlap 1370856 AGTGCATGGCACCTT GCGC-TCGCC TTC GGCCAAGCGC TTTTTTGCGCCGCAA TERM 1283 1371335 - 1371357 + G 80 -3.3 -5.02074 | CGCGCAGTATGGCAG TTGCCAGGG CTACA CCCGTGCAA TTTTTTCCGGCCTGC Daro_1263 1370784 - 1371638 + | NAD-dependent epimerase/dehydratase:dTDP-4-dehydrorhamnose reductase Daro_1264 1371649 - 1372659 + | NAD-dependent epimerase/dehydratase TERM 1284 1372871 - 1372849 - g 70 -9.9 -3.49653 | gap 1, opp_overlap 1372849 AGCAGTGGGAGAGAA CGCCGCGCAA ACGA TTGCGCG-CG TTATCGAGAAGGCCG Daro_1265 1372652 - 1373770 + | UDP-N-acetylglucosamine 2-epimerase TERM 1285 1374147 - 1374167 + F 71 -11.1 -2.85205 | overlap 1374144 AACGTCCCACGGCCT CGGCCAAGC AGA GCTTGGGCG TGATTGCTGTGTTGT TERM 1286 1375133 - 1375156 + F 72 -8.8 -3.81516 | overlap 1375134 1375151 AGTTTCAGCAGTGCC TCGTCGCTCG GAAA CGAGCCACGG TTCTTGGTGATTTTG Daro_1269 1376525 - 1377715 + | colanic acid biosynthesis glycosyl-transferase TERM 1287 1378274 - 1378292 + G 71 -7.5 -4.14472 | opp_overlap 1378265 1378281 GAGGAATAGCCAACG CCATCAA CATCA TTGATGG TTTTAACGGTCTTGC TERM 1288 1378397 - 1378415 + G 70 -3.7 -4.62441 | overlap 1378400 1378401 TGCTGAGTTTGGCTG CCGTGGG GAGCA TCCTCGG TTTCTTTGTCTGGAA Daro_1270 1377787 - 1378908 + | glycosyl transferase family protein TERM 1289 1380107 - 1380121 + G 77 -3.5 -4.95896 | ACGGTGCCGCATGGG CTTGG TTAAT CCGAG TTTTTGTCGATTTCT Daro_1271 1378912 - 1380201 + | polysaccharide biosynthesis protein TERM 1290 1380440 - 1380473 + G 71 -7.3 -4.20367 | gap 1, overlap 1380462 AATTCATTTTGCCTT GC-CACAGCCTTCCCG CTC CGGGGGGGCTCCGAGC TTCTTTCTTCCGGCC TERM 1291 1381246 - 1381266 + G 95 -4 -5.71712 | CATTAGATAATCCCT TGGCAGTT TTTTT AAATGCCA TTTTTTTCTATGCGC Daro_1272 1380204 - 1381406 + | hypothetical protein Daro_1273 1381411 - 1382334 + | glycosyl transferase family protein Daro_1274 1382331 - 1383410 + | glycosyl transferase, group 1 TERM 1292 1385293 - 1385273 - g 70 -3.9 -4.58395 | opp_overlap 1385292 GCGATGTGGGAAAAA CACCTGTCG GGA CGAAATGTG CAATATGCGTTGTGG Daro_1275 1383398 - 1385350 + | asparagine synthase, glutamine-hydrolyzing TERM 1293 1385658 - 1385685 + G 77 -7.6 -4.4078 | overlap 1385647 1385649 ATTTCTGGCGCGGGT GCCGGTCGTTGT CTAT ACAGCGCACGGC TTTTACTTCCACGAC Daro_1276 1385341 - 1386504 + | glycosyl transferase, group 1 Daro_1277 1386501 - 1387061 + | sugar transferase Daro_1278 1387068 - 1388921 + | NAD-dependent epimerase/dehydratase TERM 1294 1389499 - 1389517 + G 72 -13.2 -2.53343 | overlap 1389498 TGCGCGGTGATGTTT CCAGTCAG TTC CTGACTGG CTTGCTGATGGCTCT TERM 1295 1389690 - 1389702 + G 74 -3.3 -4.82901 | overlap 1389690 GGTAGCCGCTATGTT TCGCC GGG GACGA TTTTTGTCGAAGGCG TERM 1296 1390594 - 1390623 + G 73 -13.5 -2.70932 | opp_overlap 1390613 1390614 AGGCTCTGTTGTTCC GGCAGCGGGCCTT TAAC AAGGCCCCCGGCC TGGTTGGCGACGGGC Daro_1279 1388994 - 1390925 + | bifunctional 3-phosphoshikimate 1-carboxyvinyltransferase/cytidine monophosphate kinase TERM 1297 1390930 - 1390951 + F 100 -12.3 -4.41616 | CATTGCAGTAAGGTG TTACCGGCC AGGT GGCCGGTGA TTTGTTTCAAACCCT TERM 1298 1391972 - 1391940 - g 70 -10 -3.53811 | gap 1, overlap 1391956 TTCACGTCTCCGAAA TGGACTGGACGAACA AGAA CGTTCATCC-GTCCA AGGTTGTCCAGCTCG rpsA 1391018 - 1392697 + | 30S ribosomal protein S1 Daro_1281 1392710 - 1392994 + | integration host factor, beta subunit TERM 1299 1393025 - 1393048 + F 100 -15.4 -5.49234 | AATGTGGTAGATTCA GGGCAGTGAA TGAT TTCACTGCCC TTTTTTATTGAATGT TERM 1300 1393166 - 1393204 + G 100 -11.6 -5.64274 | overlap 1393170 TCGCCTCCTGCCTGG GCAGGCATGGCAAGCGCC ACT GGTGATTGCCTTGCTGGC TTTTTTTGTCGGTGG Daro_1282 1393056 - 1393346 + | hypothetical protein Daro_1283 1393343 - 1394515 + | hypothetical protein Daro_1284 1394525 - 1395844 + | UDP-glucose/GDP-mannose dehydrogenase Daro_1285 1395848 - 1396786 + | D-alpha,beta-D-heptose 7-phosphate 1-kinase Daro_1286 1396799 - 1397797 + | ADP-glyceromanno-heptose 6-epimerase precursor cysM 1397790 - 1398689 + | cysteine synthase B Daro_1288 1398686 - 1399471 + | propable PolB Daro_1289 1399532 - 1400080 + | inorganic pyrophosphatase nadE 1400087 - 1401703 + | NAD synthetase Daro_1291 1401728 - 1402066 + | nitrogen regulatory protein P-II TERM 1301 1402112 - 1402129 + T 95 -9.1 -5.04249 | opp_overlap 1402112 GGTAGTGCCAGAAAA GGGTGAC TCAG GTCGCCC TTTGTTTTTTCGGGG TERM 1302 1402129 - 1402112 - T 75 -6.9 -4.38712 | opp_overlap 1402112 GGTAGTGCCAGAAAA GGGTGAC TCAG GTCGCCC TTTGTTTTTTCGGGG Daro_1292 1402889 - 1402119 - | Smr protein/MutS2 C-terminal TERM 1303 1402713 - 1402736 + g 83 -2.2 -5.24129 | AGCGGAATTCCAGTG CGCCGGCAAG GTCT CATTACGGCG TTTTTTCTGCGCCGG Daro_1293 1403858 - 1402896 - | thioredoxin reductase TERM 1304 1404029 - 1404041 + G 71 -7.7 -4.09685 | TCTGGTGGTTTTGCG CAACG TAC CGTTG TTTTCCGGGCTGGAC TERM 1305 1404216 - 1404239 + G 100 -8.8 -5.0133 | gap 1 GGTCGCGAAATCATT CTCGC-CTGGC TTG GCCCGAGCGAG TTTTTTGGCGAGATG Daro_1294 1403988 - 1404650 + | cyclic nucleotide-binding: regulatory protein, Crp Daro_1295 1404653 - 1406959 + | DNA translocase FtsK TERM 1306 1407022 - 1406998 - f 100 -13.6 -3.59262 | overlap 1407000 TGTTACACCCTGAAA CACCGCGCCA CTGGT TGGCGCGGTA AGCTATGCGCATGAA TERM 1307 1407020 - 1407000 - f 95 -14 -3.37487 | overlap 1406998 TTACACCCTGAAACA CCGCGCCA CTGGT TGGCGCGG TAAGCTATGCGCATG TERM 1308 1407313 - 1407295 - g 74 -7.4 -4.38712 | GCGATGGCGAGAAAA TCTGGATC CAC GATCCCGA GTTGCAGCAGGTTAC Daro_1296 1407027 - 1407653 + | Outer membrane lipoprotein carrier protein LolA Daro_1297 1408244 - 1407666 - | hypothetical protein TERM 1309 1409186 - 1409155 - g 72 -12.4 -3.05384 | gap 1, opp_overlap 1409162 1409163 1409175, overlap 1409162 1409163 1409172 GGCGCCTTTATCGAA TCGACAATGGCGCAG AAC CTGCGCCGTT-TCGA CAAAGGCGGCGATGC TERM 1310 1409180 - 1409162 - g 70 -10.2 -3.4285 | opp_overlap 1409162 1409163 1409175, overlap 1409155 1409163 1409172 TTATCGAATCGACAA TGGCGCAG AAC CTGCGCCG TTTCGACAAAGGCGG TERM 1311 1409162 - 1409180 + G 79 -12.4 -3.53012 | opp_overlap 1409155 1409162 1409163 1409172, overlap 1409163 1409175 TTATCGAATCGACAA TGGCGCAG AAC CTGCGCCG TTTCGACAAAGGCGG TERM 1312 1409179 - 1409163 - g 72 -13.7 -2.65388 | opp_overlap 1409162 1409163 1409175, overlap 1409162 1409155 1409172 TATCGAATCGACAAT GGCGCAG AAC CTGCGCC GTTTCGACAAAGGCG TERM 1313 1409163 - 1409179 + G 73 -13.7 -2.71712 | opp_overlap 1409163 1409162 1409155 1409172, overlap 1409162 1409175 TATCGAATCGACAAT GGCGCAG AAC CTGCGCC GTTTCGACAAAGGCG TERM 1314 1409769 - 1409731 - g 73 -4.5 -4.59511 | gap 1 AAGATCGGGGAAAAA CTGGCCCATCTGCGCGAC CTGG ATCGCA-AGGCGGGCAAG AAATAGTGGAGATGG Daro_1298 1408462 - 1409775 + | recombination factor protein RarA TERM 1315 1410246 - 1410276 + G 71 -6.1 -4.37527 | gap 1 TGGACAATGCTCGCA TCGCC-GCTGGTCT TTTT AGGCTTGCTGGCGA TTTTCCTGATTATCG Daro_1299 1409781 - 1410350 + | hypothetical protein TERM 1316 1411236 - 1411270 + G 81 -13.6 -3.35679 | overlap 1411199 GCGCGGCATGATCCG CCAGCACCAGTTTGAC AAG GTCGAGTTGGTGCAGG TTGTGCATCCGGAGA Daro_1300 1410400 - 1411683 + | seryl-tRNA synthetase TERM 1317 1411723 - 1411694 - T 72 -11.3 -2.53876 | opp_overlap 1411691 1411690 CCTGATCGGAATCGA TCGCCGCTCGCGC TCCG GCGCGGGCGGAAA CCCCTTATTCGTTTT Daro_1301 1413263 - 1411728 - | lytic transglycosylase, catalytic TERM 1318 1411845 - 1411855 + g 70 -3.2 -4.60889 | TGAGGCAGCCATCTT CCTG ACG TAGG TTTTTCGACGTCCTT TERM 1319 1413391 - 1413402 + H 100 -7.2 -5.49579 | opp_overlap 1413391 CCAGCGAACAACAAA GCCC TTCG GGGC TTTTGTTTTTTATAG TERM 1320 1413402 - 1413391 - H 77 -7.2 -4.46854 | opp_overlap 1413391 CCAGCGAACAACAAA GCCC TTCG GGGC TTTTGTTTTTTATAG TERM 1321 1414181 - 1414199 + G 82 -11 -3.91858 | TATGTTCAAGAAGTT CAGGCCGA CTC TCGGTCTG TTTCTCGAATATGTC TERM 1322 1414779 - 1414763 - g 80 -3.6 -5.10077 | opp_overlap 1414772 1414774 AAAGACGGTAAAAAA TGCGTC TTCTC GGCGCA AGGTGCCTATTCACT Daro_1302 1413492 - 1415189 + | Phage integrase Daro_1303 1415224 - 1416813 + | N-6 DNA methylase TERM 1323 1417174 - 1417194 + T 85 -14 -2.73364 | TTCTCTGCGGGTTAA GCCGCTGC GGCGA GCAGCGGC TGGTTGAAGTAAGCC Daro_1305 1417997 - 1417170 - | integrase catalytic subunit Daro_1306 1418296 - 1417994 - | transposase IS3/IS911 TERM 1324 1418962 - 1418952 - g 77 -3.2 -5.00616 | overlap 1418953 1418954 CTTGGCCTGAAAAAA TCGG CAG CCAA GCTGATGCCAGCAGC Daro_1307 1418511 - 1419368 + | restriction modification system DNA specificity subunit Daro_1308 1419442 - 1422675 + | Type I site-specific deoxyribonuclease HsdR Daro_1309 1424707 - 1422983 - | hypothetical protein TERM 1325 1424995 - 1424966 - R 100 -15.7 -4.70319 | opp_overlap 1424965 1424962 TTACGAAAATGAAAA GACCCCCGGAGGG TTTC CCCTGCGGAGGTC GTGATTGGGTTGGCT Daro_1310 1425727 - 1425086 - | hypothetical protein Daro_1311 1426541 - 1425720 - | helix-hairpin-helix DNA-binding motif-containing protein Daro_1312 1427194 - 1426631 - | resolvase, N-terminal:resolvase helix-turn-helix region Daro_1313 1427364 - 1428125 + | hypothetical protein TERM 1326 1428338 - 1428356 + F 100 -9.5 -5.24796 | GTTGGTGCTGCTATA GGGTCGC CTTGC GCGGCCC TTTTTGTTATCTGAA TERM 1327 1429860 - 1429870 + G 76 -5.4 -4.59109 | AGCTTTTCTATCGAT TACC TTC GGTA TTTTTGCCGCCTATG Daro_1314 1428538 - 1430154 + | hypothetical protein Daro_1316 1430851 - 1431432 + | hypothetical protein TERM 1328 1431657 - 1431709 + F 81 -4.4 -5.10064 | gap 1 TCTCCGCCAGCACCC GAACAAGCCACATTATTTATGTC AAAACAAC GACTTGGATA-TGTGGCTTTTTC TTTTTGTCTGTTGGC TERM 1329 1432413 - 1432433 + G 100 -11.1 -5.1861 | overlap 1432414 GATTTCAGGTTTTGG TGCCGGGCT GGA AGCCTGGCG TTTTTTGATCCTGCC TERM 1330 1432414 - 1432432 + G 82 -12.4 -3.70443 | overlap 1432413 ATTTCAGGTTTTGGT GCCGGGCT GGA AGCCTGGC GTTTTTTGATCCTGC TERM 1331 1432558 - 1432573 + G 73 -4.6 -4.67982 | overlap 1432563 GCTCGCGCCAAGGGC CTGCCG GAAA CGGTGG TTTTCTTCCGTCACG Daro_1317 1431865 - 1432842 + | binding-protein dependent transport system inner membrane protein TERM 1332 1433315 - 1433327 + G 71 -6.9 -4.20516 | overlap 1433286 CACGGCTTTCCGTGC GGCCG GGC TGGCC TTTGTTGGCTGGGCG Daro_1318 1432839 - 1434245 + | binding-protein dependent transport system inner membrane protein Daro_1319 1434246 - 1436222 + | oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal Daro_1320 1437762 - 1436224 - | peptidoglycan-binding LysM:lytic transglycosylase, catalytic TERM 1333 1437845 - 1437874 + r 95 -10.9 -4.57569 | opp_overlap 1437845 1437853, overlap 1437853 TTTTCCGAGCAGGAA CAAAAAAACCAGC CGGA GCTGGTTTTTTTA TTTTTGGCGGAGTGG TERM 1334 1437874 - 1437845 - R 85 -13.1 -3.21099 | opp_overlap 1437845 1437853, overlap 1437853 TTTTCCGAGCAGGAA CAAAAAAACCAGC CGGA GCTGGTTTTTTTA TTTTTGGCGGAGTGG TERM 1335 1437866 - 1437853 - R 100 -8.1 -5.84381 | opp_overlap 1437845 1437853, overlap 1437845 GCAGGAACAAAAAAA CCAGC CGGA GCTGG TTTTTTTATTTTTGG TERM 1336 1437853 - 1437866 + r 100 -8.1 -6.20267 | opp_overlap 1437853 1437845, overlap 1437845 GCAGGAACAAAAAAA CCAGC CGGA GCTGG TTTTTTTATTTTTGG TERM 1337 1438102 - 1438130 + r 75 -11.7 -3.06796 | opp_overlap 1438120, overlap 1438104 GTTCGGCGCTTGGTG GAGGTACGCGG GATCGAA CCGCGGACCTC TTGCATGCCATGCAA TERM 1338 1438466 - 1438494 + r 75 -11.7 -3.06796 | opp_overlap 1438484, overlap 1438468 TTTCGCACTTTGGTG GAGGTACGCGG GATCGAA CCGCGGACCTC TTGCATGCCATGCAA TERM 1339 1438549 - 1438588 + r 86 -10.8 -3.90874 | gap 1, opp_overlap 1438549, overlap 1438542 CCCGCCGCGAAAGAA GGCCGCATTATAGGGACCG TCC TGGTCCTTGTAAAG-GGCC TTTCGCTATTTTTTA gltX 1439995 - 1438601 - | glutamyl-tRNA synthetase TERM 1340 1439624 - 1439639 + g 78 -6.8 -4.63107 | gap 1 CTCGGGGCGCCAGCG GCCGTCG TAG CG-CGGC TTTTCCTTCTTTGCT TERM 1341 1440188 - 1440226 + r 100 -12.5 -4.8048 | opp_overlap 1440195, overlap 1440195 GTCCCTCACGAGAAA CCGAAAACCCGCTCAGC GCAAG GCTCAGCGGGTTTTTTG TTTTTGCTCTAACCG TERM 1342 1440219 - 1440195 - R 95 -11.4 -4.40173 | opp_overlap 1440188 1440195 ACGAGAAACCGAAAA CCCGCTCAGC GCAAG GCTCAGCGGG TTTTTTGTTTTTGCT TERM 1343 1440195 - 1440219 + r 100 -11.4 -5.95286 | opp_overlap 1440195, overlap 1440188 ACGAGAAACCGAAAA CCCGCTCAGC GCAAG GCTCAGCGGG TTTTTTGTTTTTGCT Daro_1322 1440600 - 1440346 - | hypothetical protein TERM 1344 1440667 - 1440698 + H 70 -4.4 -4.52857 | overlap 1440655 1440654 1440668 GGTGTAAATATATAT TTACGTTAGTTCGC TAAA GCGATCTGATGTAC TTTTATATAAACAAT Daro_1323 1440725 - 1441009 + | hypothetical protein Daro_1324 1441002 - 1442237 + | Phage integrase Daro_1325 1442240 - 1443079 + | metal-dependent phosphohydrolase, HD region Daro_1326 1443092 - 1443730 + | hypothetical protein TERM 1345 1443899 - 1443922 + T 100 -10.3 -5.67967 | opp_overlap 1443895 1443899 GCGCGCTTAAATCAA TAGGCTCCG ATCAAA CGGGGCCTA TTTTTTTGTCGTGAT Daro_1327 1444291 - 1443950 - | integration host factor, alpha subunit TERM 1346 1444083 - 1444096 + g 74 -5.9 -4.44448 | GTCTTCGGATTGCGG CCGGG GCGT TCCGG TTTGTTTCGCATGCT TERM 1347 1444350 - 1444320 - R 100 -21.4 -4.4267 | opp_overlap 1444327, overlap 1444327 GCTCAAAACTGAAAA CACAAAAGCCTCTC AAG GAGAGGCTTTTGTG AAGTGGTCCTGGGTA TERM 1348 1444327 - 1444343 + r 100 -12.3 -4.40804 | opp_overlap 1444320 1444327 ACTGAAAACACAAAA GCCTCTC AAG GAGAGGC TTTTGTGAAGTGGTC TERM 1349 1444343 - 1444327 - R 100 -12.3 -4.90471 | opp_overlap 1444327, overlap 1444320 ACTGAAAACACAAAA GCCTCTC AAG GAGAGGC TTTTGTGAAGTGGTC TERM 1350 1444601 - 1444575 - R 91 -9.5 -4.65895 | gap 1, opp_overlap 1444575 GCCCTTAGTGAAAAA TGGCCGGTTCTA ATTC CAGA-CCGGCCA TTTGAAATTTCTGGG TERM 1351 1444575 - 1444601 + r 72 -8.8 -3.74347 | gap 1, opp_overlap 1444575 GCCCTTAGTGAAAAA TGGCCGGTTCT AATTCC AG-ACCGGCCA TTTGAAATTTCTGGG Daro_1328 1445777 - 1444827 - | hypothetical protein Daro_1330 1446842 - 1448044 + | response regulator receiver TERM 1352 1448470 - 1448452 - T 77 -11.8 -3.1855 | opp_overlap 1448450 GCTGCCAAGATCCAA CTTTGCAG CAC CTGCAAAG AAACTTATTTGTTTC Daro_1331 1449605 - 1448769 - | Alpha/beta hydrolase fold Daro_1332 1449818 - 1450354 + | hypothetical protein Daro_1333 1450888 - 1450403 - | hemerythrin HHE cation binding region TERM 1353 1450529 - 1450543 + g 89 -10 -4.6468 | opp_overlap 1450529 GAACCAGTCTATCAA CGCTTG AGC CAAGCG TTTTATGTCATTTAA TERM 1354 1450824 - 1450836 + g 80 -4.1 -5.05505 | CCGACAAGCAAATTG TCCGA CCA TTGGA TTTTTGATTTCTGGT TERM 1355 1451494 - 1451519 + H 72 -7.5 -3.93583 | CCATCCTCCCCATCT GCTGAGGGGGG AGCG CCCCTGTTAGC TTTCTGAGTCGATTC Daro_1334 1451729 - 1452163 + | hypothetical protein Daro_1335 1452196 - 1453083 + | glyoxalase/bleomycin resistance protein/dioxygenase TERM 1356 1453118 - 1453133 + F 73 -9 -3.68988 | GACTTCTTCGTCCTC CTGCCA GAAC TGGCAG TTATATTGACTGGAA Daro_1336 1453156 - 1453908 + | hydantoin racemase Daro_1337 1454096 - 1455628 + | indole acetimide hydrolase TERM 1357 1456788 - 1456776 - g 70 -3.3 -4.6759 | AACATCTGAAGAAAA CTGGA TTG TCCGG TCGGCTTTTCGGGCA Daro_1338 1455943 - 1457064 + | acetylornithine deacetylase/succinyl-diaminopimelate desuccinylase-like protein TERM 1358 1457057 - 1457043 - f 72 -5.6 -4.45738 | opp_overlap 1457043 1457042 1457054 TACGTTAACAAGAAA GCGGGA AGA TCTCGC CTTGTGATTCGTAAT TERM 1359 1457182 - 1457208 + F 93 -13.1 -3.70037 | gap 1, opp_overlap 1457181 TCGTAGCTGAATCAC GCTCGCTGCTCT AATT AG-GCAGCGAGC TTTACATCGTCGTTC Daro_1339 1457249 - 1457884 + | nitroreductase TERM 1360 1457905 - 1457926 + F 90 -8 -4.98758 | gap 1, overlap 1457906 GTCGGCGAATAGTTA C-GGAGGGC CTTTA GCCCTCCTG TTTTTATCCGTTTTT TERM 1361 1457906 - 1457924 + F 91 -11.7 -4.08693 | overlap 1457905 TCGGCGAATAGTTAC GGAGGGC CTTTA GCCCTCC TGTTTTTATCCGTTT Daro_1340 1458002 - 1458445 + | hypothetical protein Daro_1341 1458768 - 1458475 - | antibiotic biosynthesis monooxygenase Daro_1342 1459048 - 1460040 + | AraC family transcriptional regulator Daro_1343 1460276 - 1460028 - | hypothetical protein Daro_1344 1460310 - 1461551 + | putative oxygenase Daro_1345 1461548 - 1462072 + | flavin reductase-like, FMN-binding Daro_1346 1462109 - 1463284 + | aromatic hydrocarbon degradation protein TERM 1362 1463341 - 1463352 + T 72 -4.4 -4.66609 | CGCGAATTTCCTTGT CTCA ATCC TGAG TTTTTCCGTGCAGTA TERM 1363 1463459 - 1463414 - T 100 -17.1 -3.05384 | gap 1, opp_overlap 1463423, overlap 1463423 CTTTTCTCGATTCAA GTGTGAAAATGGCCGT-CTACG CAA CGTAGTACGGCCATTTTTTCAC AGGTGCGGAGTGATC TERM 1364 1463423 - 1463450 + T 100 -15 -5.02074 | gap 1, opp_overlap 1463414 1463423 ATTCAAGTGTGAAAA TGGCCGT-CTACG CAA CGTAGTACGGCCA TTTTTTCACAGGTGC TERM 1365 1463450 - 1463423 - T 100 -15 -4.1466 | gap 1, opp_overlap 1463423, overlap 1463414 ATTCAAGTGTGAAAA TGGCCGT-CTACG CAA CGTAGTACGGCCA TTTTTTCACAGGTGC Daro_1347 1464003 - 1463473 - | hypothetical protein Daro_1348 1465211 - 1464087 - | zinc-containing alcohol dehydrogenase superfamily protein Daro_1349 1465832 - 1466932 + | BNR repeat-containing glycosyl hydrolase TERM 1366 1468384 - 1468394 + G 74 -6.8 -4.37886 | opp_overlap 1468383 TTGCAGTCGATGAAC CGCT TCC AGCG TTTTATCGAAGCTCA Daro_1350 1466929 - 1469301 + | RND efflux transporter TERM 1367 1470605 - 1470563 - g 77 -3.4 -4.87665 | gap 2, opp_overlap 1470585 1470586 GCGCATGGATAAAAA CATCGCAGCCACCCAGAGCC TGCTC GGCTCAGAGAAGC--CGATG TTCTTCTCGGTTCAG TERM 1368 1470922 - 1470955 + G 79 -8.1 -4.5081 | gap 1 GCCGGTGCGCCAGCC CCGGCGCCAAT-CAGT CCA ACTGCGATAGCGCCGG TTTGTTTGGCTATTT Daro_1351 1469367 - 1471016 + | transcriptional regulator LysR TERM 1369 1471060 - 1471050 - g 90 -5.4 -5.27477 | ATGTCAATGAAAAAA GCAA TTT TTGC CACGCTCACAGTATT TERM 1370 1471830 - 1471862 + G 72 -11.3 -3.32963 | opp_overlap 1471859 TTGCTAGGCAAGCGT TGGGTGCTGGCAGTT GCC AACAGTAAGCACCCA TTGTGGAATAAAAAT TERM 1371 1471893 - 1471877 - g 78 -2.2 -5.06816 | overlap 1471878 1471879 ATTGTGGAATAAAAA TGGCAA GGATT TTGCCG AAAAATACCCTGCGC Daro_1352 1471035 - 1472288 + | hypothetical protein TERM 1372 1472300 - 1472340 + F 85 -14.2 -2.78395 | gap 1, opp_overlap 1472300 1472301 1472310, overlap 1472301 1472310 ATAAAGCAATAGAAA GTTG-CGACAAGGTCGAGA GTTT TCTCGACCTTGTCGTCGAG TAATTGCTCCGAATT TERM 1373 1472340 - 1472300 - f 95 -12 -4.31904 | gap 1, opp_overlap 1472300 1472301 1472310, overlap 1472301 1472310 ATAAAGCAATAGAAA GTTG-CGACAAGGTCGAGA GTTT TCTCGACCTTGTCGTCGAG TAATTGCTCCGAATT TERM 1374 1472339 - 1472301 - f 100 -15.5 -3.17516 | gap 1, opp_overlap 1472300 1472301 1472310, overlap 1472300 1472310 TAAAGCAATAGAAAG TTG-CGACAAGGTCGAGA GTTT TCTCGACCTTGTCGTCGA GTAATTGCTCCGAAT TERM 1375 1472329 - 1472310 - f 83 -12.2 -3.32562 | opp_overlap 1472301 1472300 1472310, overlap 1472301 1472300 AGAAAGTTGCGACAA GGTCGAGA GTTT TCTCGACC TTGTCGTCGAGTAAT TERM 1376 1472310 - 1472329 + F 83 -12.2 -3.4178 | opp_overlap 1472310 1472301 1472300, overlap 1472301 1472300 AGAAAGTTGCGACAA GGTCGAGA GTTT TCTCGACC TTGTCGTCGAGTAAT TERM 1377 1472556 - 1472569 + G 74 -3.1 -4.78107 | overlap 1472547 CGTGGATTTCGATCC GGAAG TTAT CTTTC TTTTTGCTCCTGATC TERM 1378 1473061 - 1473047 - g 78 -10 -3.99592 | opp_overlap 1473060, overlap 1473052 ATCCATCACCAGAAA GACGAG CTG CTCGTC AGCAGCGAACCAAGG Daro_1353 1472428 - 1473381 + | 3-(2,3-dihydroxyphenyl)propionate dioxygenase Daro_1354 1473468 - 1474256 + | hydratase/decarboxylase Daro_1355 1474285 - 1475199 + | acetaldehyde dehydrogenase TERM 1379 1475260 - 1475241 - g 84 -3.6 -5.22039 | gap 1 CTCAAAGGCAAAAAA GTCACCGTC CAT GACA-TGAC CCTGCGCGATGGCAT Daro_1356 1475220 - 1476245 + | 4-hydroxy-2-ketovalerate aldolase TERM 1380 1476845 - 1476822 - g 79 -8.8 -4.15044 | overlap 1476824 TCCGGGGCCAATAAA GACACCCAGT CTGG ACCGGGTGAC CGGCGGGGATGATCA TERM 1381 1476843 - 1476824 - g 73 -10 -3.6761 | overlap 1476822 CGGGGCCAATAAAGA CACCCAGT CTGG ACCGGGTG ACCGGCGGGGATGAT Daro_1357 1476250 - 1477002 + | Short-chain dehydrogenase/reductase SDR TERM 1382 1477065 - 1477047 - f 86 -9 -4.42851 | opp_overlap 1477040, overlap 1477040 TTAATAAATTGAAAA TCAATTGA TAA TCAATTGA ACTATGTTAAATTTA Daro_1358 1477148 - 1478503 + | Rieske (2Fe-2S) region Daro_1359 1478558 - 1479607 + | oxidoreductase FAD/NAD(P)-binding:oxidoreductase FAD-binding region Daro_1360 1479748 - 1481148 + | amidase Daro_1361 1481197 - 1482093 + | Alpha/beta hydrolase fold TERM 1383 1482845 - 1482831 - g 85 -2.9 -5.32944 | overlap 1482824 GCGAGAACCAAAAAA TTTGT TCCCC ACAAA ATCGAGCGGGTACGC TERM 1384 1482894 - 1482910 + G 74 -5.8 -4.56358 | gap 1, overlap 1482893 1482892 TCGATTCGCGGTGTG CCGCTCG CTAG CG-GCGG TTTTCTCTCCATCTA TERM 1385 1483975 - 1484004 + G 70 -12.9 -2.90496 | overlap 1483973 1483998 CCGGTGCTGAAGTGC TGCTGCGCTGG CAGCACCC CCAGCGCGGCA TGGTTTCGCCGGCCG Daro_1362 1482150 - 1484738 + | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) TERM 1386 1485634 - 1485620 - g 71 -5.6 -4.32857 | overlap 1485621 1485624 CTGCGGAAACACAAA GCGAGG CCA CCTCGT CGGCGGCTGCCTCCA Daro_1363 1484728 - 1486362 + | PAS TERM 1387 1486426 - 1486447 + T 82 -11.5 -3.49562 | opp_overlap 1486380 1486379 1486412, overlap 1486422 AGTGGCTGAGCACCG GCCACCCCG ACAG CGGGGTGAC TTGATTCCTGTTTTA Daro_1364 1487482 - 1486799 - | hypothetical protein Daro_1365 1488981 - 1487479 - | hypothetical protein TERM 1388 1487609 - 1487594 - G 70 -3.2 -4.58395 | CGCATCTTGTAAAAA GGGTTG TAAT CAAACC AAGGTGCCGTCCGGC Daro_1366 1489275 - 1488997 - | hypothetical protein TERM 1389 1489709 - 1489698 - R 72 -4.4 -4.59853 | GGAATGGCCGAAAAA CCAA CGAA TTGG GGGTAATGTCAAACT Daro_1367 1490568 - 1489741 - | regulatory protein, LuxR Daro_1368 1490798 - 1492153 + | hypothetical protein Daro_1369 1492150 - 1493586 + | hypothetical protein TERM 1390 1494912 - 1494894 - g 74 -11.6 -3.54919 | overlap 1494895 AAGGATTGTTCGAAA CGCGCGCG CAA CCCGCGCG ACGCCATGAACTGCA Daro_1370 1493604 - 1496369 + | hypothetical protein TERM 1391 1496742 - 1496765 + T 86 -9.5 -4.34402 | TTACCGTTCGTTCAG CCGCCGCTG ATAGTC CAACGGCGG TTTTCGTCTGAAGCG Daro_1371 1497319 - 1496798 - | hypothetical protein TERM 1392 1497418 - 1497428 + G 85 -6.8 -4.82901 | overlap 1497395 TGCCGTTGACCAGTA TGGC AAA GCCA TTTTTATCAAGCCAA Daro_1372 1497350 - 1498375 + | IS111A/IS1328/IS1533 Daro_1373 1499333 - 1498653 - | hypothetical protein Daro_1374 1503723 - 1499344 - | hypothetical protein TERM 1393 1500627 - 1500578 - G 77 -11.6 -3.61356 | gap 1, opp_overlap 1500573, overlap 1500581 AGCATGTAGCGCAAA TTACCGATACTCTTGGGA-GGCT TGCGC AACCGCCCCAAGAGTATCGGTGC GAGCTTGTCCCACAT TERM 1394 1500624 - 1500581 - G 86 -17.7 -2.92792 | gap 1, opp_overlap 1500573, overlap 1500578 ATGTAGCGCAAATTA CCGATACTCTTGGGA-GGCT TGCGC AACCGCCCCAAGAGTATCGG TGCGAGCTTGTCCCA TERM 1395 1501217 - 1501227 + g 88 -6.8 -5.00616 | TGGCGTTCTGCCCGT CGTG CCG CACG TTTTTTCCAGCGCGC TERM 1396 1503944 - 1503915 - R 78 -9.3 -3.9712 | opp_overlap 1503919 1503925, overlap 1503919 1503921 TCATGCTAGGAGAAA TAGATAGGCCGGG TTGT CCCAGCCCATTTA GCTTCTTGAGACCTT TERM 1397 1503940 - 1503919 - R 72 -10.1 -3.36228 | opp_overlap 1503919 1503925, overlap 1503915 1503921 GCTAGGAGAAATAGA TAGGCCGGG TTGT CCCAGCCCA TTTAGCTTCTTGAGA TERM 1398 1503938 - 1503921 - R 74 -10.5 -3.24406 | opp_overlap 1503919 1503925, overlap 1503919 1503915 TAGGAGAAATAGATA GGCCGGG TTGT CCCAGCC CATTTAGCTTCTTGA Daro_1375 1504982 - 1504059 - | hypothetical protein TERM 1399 1504788 - 1504807 + g 85 -5.6 -5.11063 | gap 1, overlap 1504791 CACGACCACGCTTAC CGCTGCCCC GGC GGGGCC-CG TTTTTCTTAAATCAT Daro_1376 1509797 - 1504995 - | hypothetical protein TERM 1400 1510250 - 1510270 + r 81 -12.7 -3.22388 | TGGATAAATTCGCTT CTGTCACAA AAA TTGTGACAG TTGGTCGATTCGGTA TERM 1401 1510449 - 1510499 + r 74 -10.7 -3.21258 | gap 1, opp_overlap 1510465, overlap 1510465 GCATCTCGATGGCCC TCGCAAGAAGCATAAA-CCTCTGA TTTG TCAGAGGTTTTTTGCTTTTTGGGG TTCGGTTGCATTCCT TERM 1402 1510465 - 1510482 + r 100 -9.9 -5.54079 | opp_overlap 1510465, overlap 1510449 CGCAAGAAGCATAAA CCTCTGA TTTG TCAGAGG TTTTTTGCTTTTTGG TERM 1403 1510482 - 1510465 - R 83 -9.9 -4.14257 | opp_overlap 1510449 1510465 CGCAAGAAGCATAAA CCTCTGA TTTG TCAGAGG TTTTTTGCTTTTTGG Daro_1377 1511258 - 1510818 - | surface antigen protein Daro_1378 1511723 - 1511376 - | amine oxidase, flavin-containing TERM 1404 1511991 - 1511978 - g 78 -5.2 -4.73613 | TCATCATCAAGAAAA GCCG CTTCCT CGGC TGCGTCCAACCCGTA Daro_1379 1511917 - 1512516 + | hypothetical protein TERM 1405 1512561 - 1512539 - T 76 -9.1 -3.74347 | opp_overlap 1512539, overlap 1512533 1512532 CTCAGAAAGGCGAAA GCCCCGC CGGGGGAGT GCGGGGC TTTCAAGGCGGCCAA TERM 1406 1512539 - 1512561 + T 71 -9.1 -3.53012 | opp_overlap 1512539 1512533 1512532 CTCAGAAAGGCGAAA GCCCCGC CGGGGGAGT GCGGGGC TTTCAAGGCGGCCAA TERM 1407 1512881 - 1512918 + T 78 -9.1 -3.90112 | gap 1, opp_overlap 1512881 CTTGTCTGTCCAGAA TGCGCCATGGTCCTGCTC ACT GAGCCGGTCGATG-CGCA TTTGATTCAGAAAGC TERM 1408 1513134 - 1513155 + T 78 -7.9 -4.38154 | overlap 1513138 GTGGCTCGGTTTTCA GGGGCTGGG TGTT CCCAGTGCC TTTTGTACGCGCTCT Daro_1380 1513520 - 1513248 - | hypothetical protein Daro_1381 1513632 - 1514246 + | DNA polymerase III, epsilon subunit TERM 1409 1514800 - 1514827 + G 80 -9.8 -4.07877 | GTCCGCATTACAGGC CTGGCTTGCTGG TTGG CTGGCAAGCCCG TTGTTTCTGCACTGC Daro_1382 1514255 - 1514893 + | glutathione S-transferase Daro_1383 1514941 - 1515306 + | hypothetical protein TERM 1410 1515479 - 1515457 - f 93 -4.1 -5.47399 | GTAATTTCAAAAAAA GCCTTCATG ACCAG CATGATGAC GCCAAGAAGCAAGTT Daro_1384 1515702 - 1516352 + | ribonuclease H TERM 1411 1516500 - 1516516 + T 72 -4.3 -4.62069 | overlap 1516501 ATAACGGATTGTTCG TTCCAGG AGG CCGGGAG TTTTTGCGCTGGCAA TERM 1412 1516604 - 1516571 - T 100 -15.5 -4.04206 | opp_overlap 1516573 1516578, overlap 1516578 TCAGCTGTACAGAAA GAAAAAAGACCAGCA AATT TGCTGGTCTTTTGTC CTTCCAAGGATACTA TERM 1413 1516573 - 1516602 + T 77 -12.3 -2.71364 | opp_overlap 1516571 1516578, overlap 1516578 AGCTGTACAGAAAGA AAAAAGACCAGCA AATT TGCTGGTCTTTTG TCCTTCCAAGGATAC TERM 1414 1516597 - 1516578 - T 100 -12.2 -5.76237 | opp_overlap 1516578 1516573, overlap 1516571 TACAGAAAGAAAAAA GACCAGCA AATT TGCTGGTC TTTTGTCCTTCCAAG TERM 1415 1516578 - 1516597 + T 100 -12.2 -4.5442 | opp_overlap 1516571 1516578, overlap 1516573 TACAGAAAGAAAAAA GACCAGCA AATT TGCTGGTC TTTTGTCCTTCCAAG Daro_1385 1516856 - 1516644 - | hypothetical protein TERM 1416 1516990 - 1516966 - R 74 -7.8 -4.08216 | overlap 1516967 TTAGGTGTTGCAAAA GGAAGCCCGG GCCTG CCAGGCTTCA ACGGATTTGACGGGA TERM 1417 1516989 - 1516967 - R 75 -11.3 -3.04715 | overlap 1516966 TAGGTGTTGCAAAAG GAAGCCCGG GCCTG CCAGGCTTC AACGGATTTGACGGG Daro_1386 1517810 - 1517007 - | hypothetical protein TERM 1418 1517801 - 1517770 - G 81 -16 -2.93769 | opp_overlap 1517768 1517776, overlap 1517761 1517776 AAATAATTGTAGACA CAAAAAGGGCCAGC GAAT GCTGACCCTTCTTG ACGTTTCATGCCGGA TERM 1419 1517795 - 1517776 - G 100 -11.4 -5.03994 | opp_overlap 1517768 1517776, overlap 1517770 TTGTAGACACAAAAA GGGCCAGC GAAT GCTGACCC TTCTTGACGTTTCAT TERM 1420 1517776 - 1517795 + g 71 -9.2 -3.71321 | opp_overlap 1517776 1517770, overlap 1517768 TTGTAGACACAAAAA GGGCCAGC GAAT GCTGACCC TTCTTGACGTTTCAT TERM 1421 1517844 - 1517821 - R 90 -9.6 -4.58395 | gap 1, overlap 1517822 1517823 TTCATGCCGGAAAAA GTCTCCGACCA TGC TGGCCGGAG-C AAGCCTGTTCGGCAG TERM 1422 1517844 - 1517822 - R 72 -9.8 -3.34716 | overlap 1517821 1517823 TCATGCCGGAAAAAG TCTCCGACCA TGC TGGCCGGAGC AAGCCTGTTCGGCAG TERM 1423 1517843 - 1517823 - R 81 -13.3 -2.60508 | overlap 1517821 1517822 CATGCCGGAAAAAGT CTCCGACCA TGC TGGCCGGAG CAAGCCTGTTCGGCA Daro_1387 1518191 - 1517871 - | alginate regulatory protein TERM 1424 1518376 - 1518393 + r 81 -9.8 -4.00124 | opp_overlap 1518376 AGTGCCAAAGAAAAA GCCCGG CATGAA CCGGGC TTTCATTGTCAGATG TERM 1425 1518393 - 1518376 - R 100 -10.5 -5.27938 | opp_overlap 1518376 AGTGCCAAAGAAAAA GCCCGGC ATGA ACCGGGC TTTCATTGTCAGATG Daro_1388 1518625 - 1518422 - | cold-shock DNA-binding protein family protein TERM 1426 1518876 - 1518855 - R 82 -8 -4.4874 | opp_overlap 1518855 CGCAAAAAGCGAAAA GCCCATGC GTTCAG ACATGGGC TTTGTAAATCTTTGA TERM 1427 1518917 - 1518929 + r 73 -9.1 -3.69323 | CACGGCCTAGGCGTT CGGCA ATT TGCCG TTTGGGTGCTACTCG TERM 1428 1519057 - 1519074 + r 71 -2.7 -4.86385 | opp_overlap 1519052 TTCCAGATTACTCCT CTGGA AAGGAAAG TCCAG TTTATTTTTCAGAAT Daro_1389 1520117 - 1519188 - | hypothetical protein TERM 1429 1519688 - 1519649 - G 71 -7 -4.18018 | gap 1, overlap 1519653 CCTCTTTACGCAAAA GCCAGCCCGT-GCCCAGGC CAA GCCCGGCCCACAGGGCAGC CCCGGTGGCGGCGGC Daro_1390 1521117 - 1520203 - | Pirin, N-terminal:Pirin, C-terminal Daro_1391 1521742 - 1521143 - | NAD(P)H dehydrogenase (quinone):NADPH-dependent FMN reductase TERM 1430 1521584 - 1521572 - G 73 -10.5 -3.61398 | GGCCGGCGTGAACAA GGCGC CGA GCGCC GGTTCGTCGAGCACC Daro_1392 1521871 - 1522782 + | LysR family transcriptional regulator Daro_1393 1523843 - 1523028 - | PpiC-type peptidyl-prolyl cis-trans isomerase Daro_1394 1524303 - 1523848 - | NifZ Daro_1395 1524644 - 1524303 - | nitrogen fixation protein NifW TERM 1431 1524379 - 1524365 - G 70 -10 -3.53224 | overlap 1524377 CATCCGGTTTGGAAA CGGTCT GGA AGACCG CGAAGACCTTCTCCG Daro_1396 1525194 - 1524655 - | hypothetical protein Daro_1397 1525991 - 1525215 - | Serine O-acetyltransferase Daro_1398 1527120 - 1525984 - | pyruvate carboxyltransferase TERM 1432 1527064 - 1527052 - G 76 -6.9 -4.43477 | opp_overlap 1527055, overlap 1527054 TTCATCCAACGAAAA GGCCA CGC CGGCC GATTGCTCGCCGTCG TERM 1433 1527480 - 1527461 - g 81 -5 -5.00616 | overlap 1527464 1527479 TTGTGGCGGAAAAAA TGATTGAG ATTG CTCAAACA GTCAGGAGACTGATC Daro_1399 1527460 - 1529511 + | PAS Daro_1400 1529514 - 1530164 + | two component LuxR family transcriptional regulator TERM 1434 1530320 - 1530338 + G 88 -2.3 -5.4833 | gap 1, overlap 1530321 1530322 CACGTTCTGCACTGA TC-GCCGC TTCT GCGGCTGC TTTTTTGTTCACTAC Daro_1401 1530289 - 1530639 + | cytochrome c, class I TERM 1435 1530847 - 1530835 - g 73 -9.1 -3.91357 | opp_overlap 1530834, overlap 1530836 CGAGAACGACAACAA GGCCA TCC TGGCC GTCTATAAAGGCAAG Daro_1402 1530686 - 1531639 + | double CXXCH motif-containing protein Daro_1403 1531661 - 1533979 + | hypothetical protein TERM 1436 1534012 - 1534031 + F 100 -11.4 -5.00138 | opp_overlap 1534006 CCGCAGCAAGATTCA GGGGCCAG ATTC TTGGCCCC TTTTTCCTTTCAGTG Daro_1404 1534107 - 1536074 + | cytochrome c family protein TERM 1437 1536097 - 1536115 + F 100 -16 -5.22312 | GTTTCTGAATGTTGA GGGAGGGC TTT GCCCTCCC TTTTTTCGTCTGGAT Daro_1405 1536142 - 1537341 + | TPR repeat-containing protein Daro_1406 1537643 - 1538047 + | hemerythrin Daro_1407 1539060 - 1538092 - | hypothetical protein TERM 1438 1538581 - 1538610 + g 73 -10.7 -3.62775 | gap 1, opp_overlap 1538561 GCCGACGGGCACCGG CTGCTCGGCGCCGC CCC GCGG-GTCGACCAG TTCTTCGAGGGTGGT Daro_1408 1539835 - 1539077 - | leucine-rich repeat-containing protein Daro_1409 1540088 - 1539825 - | hypothetical protein Daro_1410 1540816 - 1540085 - | dinitrogenase iron-molybdenum cofactor biosynthesis TERM 1439 1540888 - 1540835 - R 77 -10.2 -3.59979 | opp_overlap 1540835 GGGCTCCAGGGGAAA GTCTTCAGTGGAGCACCGGTGCAG ATTTGG CTGCGCCGGCGTTCGGCTCAAGAC TTTGCTCAGGCCGGG TERM 1440 1540835 - 1540888 + r 100 -14.6 -3.72576 | opp_overlap 1540835 GGGCTCCAGGGGAAA GTCTTCAGTGGAGCACCGGTGCAG ATTTGG CTGCGCCGGCGTTCGGCTCAAGAC TTTGCTCAGGCCGGG Daro_1411 1541085 - 1540894 - | 4Fe-4S ferredoxin, iron-sulfur binding Daro_1412 1541404 - 1541162 - | NifT/FixU TERM 1441 1541400 - 1541437 + g 86 -14.1 -3.53091 | opp_overlap 1541394, overlap 1541401 1541404 GCCATGTAACGCTCC TGCATGACCGGCGGAGC CAGG GCTCCGCCGGTGGTCCG TTTAGCGAACCAGGT TERM 1442 1541401 - 1541436 + g 79 -15.4 -2.71712 | opp_overlap 1541394, overlap 1541400 1541404 CCATGTAACGCTCCT GCATGACCGGCGGAGC CAGG GCTCCGCCGGTGGTCC GTTTAGCGAACCAGG TERM 1443 1541404 - 1541433 + r 95 -15.7 -2.64155 | opp_overlap 1541394, overlap 1541401 1541400 TGTAACGCTCCTGCA TGACCGGCGGAGC CAGG GCTCCGCCGGTGG TCCGTTTAGCGAACC Daro_1413 1543007 - 1541439 - | nitrogenase molybdenum-iron protein beta chain TERM 1444 1542096 - 1542111 + g 71 -7.6 -4.11692 | GTTCCAGGTGGCTTC GACGAA TTTC TTCGTC TTTTCCAGCTGGGTG Daro_1414 1544548 - 1543076 - | nitrogenase molybdenum-iron protein alpha chain:nitrogenase component I, alpha chain TERM 1445 1544468 - 1544479 + g 70 -3.6 -4.59773 | CAGATGCTTGGCACG GTCC TTCT GGGC TTTTTCCGGATAAAC TERM 1446 1544626 - 1544599 - R 74 -10.4 -3.54543 | opp_overlap 1544600, overlap 1544600 ACGTACTGGTTGAAA GTGGCGGGGCGC TTGA GCACCCCGCCGT GTCTTGCACAGCTTA TERM 1447 1544600 - 1544625 + r 87 -13.9 -3.07192 | opp_overlap 1544600 1544599 CGTACTGGTTGAAAG TGGCGGGGCGC TTGA GCACCCCGCCG TGTCTTGCACAGCTT TERM 1448 1544625 - 1544600 - R 85 -13.9 -2.72511 | opp_overlap 1544600, overlap 1544599 CGTACTGGTTGAAAG TGGCGGGGCGC TTGA GCACCCCGCCG TGTCTTGCACAGCTT Daro_1415 1545529 - 1544639 - | nitrogenase iron protein subunit NifH TERM 1449 1544793 - 1544819 + g 70 -10.8 -3.51825 | TTGACGATCTTGTTG GCGAGCTGGCGA TAT TCGTCAGCCTGC TTGTGCTTCGGATCG Daro_1416 1545646 - 1546632 + | hypothetical protein Daro_1417 1547189 - 1546653 - | hypothetical protein TERM 1450 1547434 - 1547406 - g 73 -5.2 -4.58283 | gap 1, opp_overlap 1547407, overlap 1547407 GAACTGCGCGAAAAA CTGCTGGCCGGCC TCAA GGACGGC-AGCAT CGTTCCCTATCTTGG Daro_1418 1547382 - 1548218 + | hypothetical protein TERM 1451 1548815 - 1548772 - g 79 -8.8 -4.2717 | gap 1, opp_overlap 1548772 1548781 1548782, overlap 1548782 ACGATGCGATGAAAA CCACCAATAACGCCAAGCGCG AAA CGCACGGGGCGAT-TTGATGG TTTGGGATGAAACCC TERM 1452 1548806 - 1548782 - g 71 -9.1 -3.81516 | opp_overlap 1548781 1548772 1548782, overlap 1548772 GAAAACCACCAATAA CGCCAAGCGCG AAA CGCACGGGGCG ATTTGATGGTTTGGG Daro_1419 1548255 - 1548812 + | hypothetical protein TERM 1453 1549044 - 1549059 + G 74 -6.1 -4.56775 | AGCACCTGCGCGTGT TGGGC GAATTG GCCCA TTTTTCCCGCGGCGT Daro_1420 1548812 - 1549189 + | hypothetical protein Daro_1421 1549194 - 1549562 + | Rieske (2Fe-2S) region Daro_1422 1549559 - 1551235 + | hypothetical protein TERM 1454 1551598 - 1551583 - g 74 -6 -4.56597 | CTGCTGCTGGAAAAA GGGGCG AACC CGACCC TGAAGAACTTTGACG Daro_1423 1551238 - 1551696 + | ankyrin Daro_1424 1552276 - 1551671 - | urease accessory protein UreG Daro_1425 1552967 - 1552281 - | urease accessory protein UreF Daro_1426 1553491 - 1552964 - | UreE urease accessory, N-terminal:UreE urease accessory, C-terminal ureC 1555202 - 1553493 - | urease subunit alpha Daro_1428 1555504 - 1555199 - | urease, beta subunit Daro_1429 1555816 - 1555514 - | urease, gamma subunit region Daro_1430 1556692 - 1555826 - | urease accessory protein UreD TERM 1455 1556307 - 1556322 + g 71 -9 -3.72576 | opp_overlap 1556320 ATCCGCGCCCGCGCA CCATCG AACA CGATGG TTTCCTGCGGCAACC Daro_1431 1556985 - 1557413 + | GCN5-related N-acetyltransferase Daro_1432 1557522 - 1558268 + | hypothetical protein Daro_1433 1558453 - 1559613 + | integrase catalytic subunit Daro_1434 1560334 - 1559642 - | ABC transporter related Daro_1435 1561177 - 1560341 - | ABC transporter related Daro_1436 1562286 - 1561171 - | inner-membrane translocator Daro_1437 1563873 - 1562296 - | inner-membrane translocator TERM 1456 1562637 - 1562650 + g 79 -9.5 -4.18018 | opp_overlap 1562636 1562637 GTACGCCGACACAAC CCGCC ATCG GGCGG TTTTGCGTCACGGCG Daro_1438 1563942 - 1564352 + | hypothetical protein TERM 1457 1564461 - 1564438 - g 78 -4.4 -4.82901 | overlap 1564422 GCCTTTTCAGAAAAA GCCAAGGCCG ATCC CGAGCTGGGC GCCCAGTTGAAGGCT Daro_1439 1564402 - 1564620 + | hypothetical protein TERM 1458 1565939 - 1565903 - g 71 -6.6 -4.19238 | overlap 1565904 CCTGGAATCTGAAAA CCCCGGGAAC-CGCAGAC TTC GTC-GCGCGTTACCGGAA ACGCTATGGCCATAC Daro_1440 1565107 - 1566303 + | extracellular ligand-binding receptor TERM 1459 1567344 - 1567315 - g 71 -7.9 -4.08144 | gap 1, overlap 1567316 1567318 TTGAGGAACCACAAA CCACGCCAGACGGC CAT ACCATCTGGC-TGA GCACCTCAAAGGTTC Daro_1441 1566315 - 1568699 + | PAS Daro_1442 1569356 - 1568913 - | cyanate hydratase TERM 1460 1569403 - 1569386 - R 100 -14.1 -4.57073 | opp_overlap 1569382 1569386 GATTGGCTGGAAAAA CGGGGGC CGAG GCCCCCG TTCGTTTGCGACTGA TERM 1461 1569386 - 1569403 + r 95 -14.1 -3.52204 | opp_overlap 1569386, overlap 1569382 GATTGGCTGGAAAAA CGGGGGC CGAG GCCCCCG TTCGTTTGCGACTGA Daro_1443 1570695 - 1569433 - | twin-arginine translocation pathway signal Daro_1444 1570887 - 1572524 + | phosphoglucomutase TERM 1462 1572543 - 1572572 + T 100 -15.7 -3.21099 | opp_overlap 1572538 1572536 1572535, overlap 1572552 GGGACAATGATGGCT GATCCGGGGCGCT TTCA GGCGCCGCGGATC TTGCTCATCGCCAGA Daro_1445 1573483 - 1572557 - | two component LuxR family transcriptional regulator TERM 1463 1572754 - 1572785 + g 76 -5.8 -4.63218 | gap 1 GGGTCAGGCGGAAGG CGGCG-ATCAGCGAT TCG ACCGCTGAGGCGTCG TTTTCTTCGCGCAGC TERM 1464 1573022 - 1573079 + g 77 -15.3 -2.81547 | gap 1, opp_overlap 1573017, overlap 1573026 1573046 1573047 CCAGACGATACGGCT GTCG-GCGGCGCGCACGGCGACCGTGGC CTG GCCGAAGGCGTCGAGCGCGCTGCGCGCC TGCTTCATCTGCCGG Daro_1446 1576865 - 1573470 - | response regulator receiver:ATP-binding region, ATPase-like:histidine kinase A, N-terminal Daro_1447 1577976 - 1576996 - | ADP-ribosylation/crystallin J1 Daro_1448 1578527 - 1577955 - | NifQ Daro_1449 1578900 - 1578538 - | ferredoxin Daro_1450 1579274 - 1578987 - | ferredoxin Daro_1451 1580562 - 1579291 - | Beta-lactamase-like:flavodoxin/nitric oxide synthase TERM 1465 1579330 - 1579354 + g 71 -7.8 -4.07568 | gap 1, overlap 1579330 CTCGCGGTGTTCGAT CC-GGCCGGTC AGGT GACGGGCCAGG TTTTCGCCGAGAAGG TERM 1466 1579597 - 1579617 + g 74 -12.5 -3.14344 | ATTGATGGTCGGGCT GCCGAAGGC GAG GCCATCGGC TTCCTCGACCAGATC Daro_1452 1581019 - 1580540 - | nitrogenase-associated protein TERM 1467 1580788 - 1580801 + g 71 -8.1 -4.07885 | opp_overlap 1580773 1580759 1580778 GCAGATGCAGGGCAT CCTCG AAGC CGAGG TTTTCCGGCACGATC Daro_1453 1581297 - 1581019 - | 4Fe-4S ferredoxin, iron-sulfur binding Daro_1454 1582800 - 1581298 - | nitrogenase cofactor biosynthesis protein NifB TERM 1468 1582949 - 1582964 + H 72 -5.4 -4.49337 | overlap 1582940 1582951 AGGGGCGGCTGACTT TTCAGG TCAT CCTGGA TTTTGTCAGTTATCA Daro_1455 1583124 - 1583867 + | dinitrogenase iron-molybdenum cofactor biosynthesis TERM 1469 1583914 - 1583934 + T 72 -8.9 -3.72576 | GGGAATCCAGTCGAT GCCTGGCCT TGG GGGCCAGCC TTTGCTCCCCAAGGG Daro_1456 1584219 - 1583959 - | hypothetical protein Daro_1457 1584339 - 1584899 + | flavodoxin FldA Daro_1458 1584912 - 1585238 + | rhodanese-like protein Daro_1459 1585235 - 1585606 + | hypothetical protein TERM 1470 1585699 - 1585720 + T 70 -10.1 -3.14132 | opp_overlap 1585701, overlap 1585701 GTTAGCGCAATTGAA AACGGGAGC TTCA GCTCCCGTC TTACTCACGCGCACA TERM 1471 1585718 - 1585701 - T 95 -12.7 -4.2803 | opp_overlap 1585699 1585701 TAGCGCAATTGAAAA CGGGAGC TTCA GCTCCCG TCTTACTCACGCGCA TERM 1472 1585701 - 1585718 + T 81 -12.7 -3.13403 | opp_overlap 1585701, overlap 1585699 TAGCGCAATTGAAAA CGGGAGC TTCA GCTCCCG TCTTACTCACGCGCA Daro_1460 1586477 - 1585755 - | hypothetical protein TERM 1473 1586546 - 1586569 + r 87 -4.7 -5.30155 | opp_overlap 1586544 1586546 CCATGCCAATTAATA TAACCGTTT ATAATC AAATGGTTA TTTTTTGATTAATAA Daro_1461 1587106 - 1586789 - | hypothetical protein Daro_1462 1588279 - 1587233 - | cytochrome oxidase assembly Daro_1463 1589182 - 1588286 - | protoheme IX farnesyltransferase Daro_1464 1589785 - 1589207 - | transmembrane protein Daro_1465 1590468 - 1589782 - | Surfeit locus 1 Daro_1466 1590539 - 1590748 + | hypothetical protein Daro_1467 1591608 - 1590736 - | cytochrome c oxidase, subunit III Daro_1468 1592216 - 1591605 - | cytochrome C oxidase assembly protein Daro_1469 1592358 - 1592221 - | hypothetical protein TERM 1474 1592369 - 1592383 + r 73 -11.4 -2.78384 | overlap 1592363 CTCATTTGACCTGGG GCTGGG TTT CCCAGC TATGGTGAGGCGGCG Daro_1470 1593950 - 1592355 - | cytochrome c oxidase, subunit I TERM 1475 1593043 - 1593025 - G 79 -8.8 -4.15044 | overlap 1593041 CCGGCGGTGAAGAAA TGGTGGGC CCA GACCACCA CCGACAGGATGCCGA Daro_1471 1595166 - 1593961 - | cytochrome c oxidase, subunit II:cytochrome c, class I:cytochrome C oxidase subunit II, transmembrane region TERM 1476 1594205 - 1594248 + g 81 -8 -4.72272 | gap 1, overlap 1594207 AGCGCCGGGAAGGCC GGCGGCAGCCCCTTGCCATCG GGC TGGTGGCAGGCGGC-GCAGAC TTTTTCATAGACGGC TERM 1477 1595135 - 1595118 - G 88 -14.1 -3.68351 | GTCGGAGCAGGGAAA GCCGCCG GCGA CGGCGGC TGGCCGAAGAATCTT Daro_1472 1595246 - 1595824 + | electron transport protein SCO1/SenC Daro_1473 1595908 - 1596213 + | antibiotic biosynthesis monooxygenase Daro_1474 1596627 - 1596235 - | hypothetical protein Daro_1475 1597479 - 1596634 - | putative molybdenum utilization protein ModD Daro_1476 1598245 - 1597499 - | molybdenum ABC transporter periplasmic-binding protein Daro_1477 1599089 - 1598271 - | molybdenum-binding protein, N-terminal:molybdenum-pterin binding protein TERM 1478 1599292 - 1599276 - H 72 -5.1 -4.48741 | CAACTCAGGAGAAAA GCAATGA ATG TCAGTGC ACGCAACGTATTCAA Daro_1478 1599279 - 1599707 + | molybdenum-pterin binding protein TERM 1479 1599728 - 1599746 + T 100 -11.7 -5.07567 | TGCAGGCTATGCCAA GGGTGGC CATAT GCCACCC TTTTTTGCGGTGTGC Daro_1479 1600483 - 1599917 - | hypothetical protein TERM 1480 1600361 - 1600416 + g 71 -9.7 -3.80551 | gap 1, overlap 1600408 GTAGACCTCCTGGAT CAGTCCTCTGATTCGCCATC-CCCGG TTGAT CTGGGCGATGGCAAACCCGGCGACTG TTTCATCGCTGTTTG Daro_1480 1600801 - 1600523 - | helix-hairpin-helix DNA-binding motif-containing protein Daro_1481 1601186 - 1600773 - | hypothetical protein Daro_1482 1601652 - 1601347 - | hypothetical protein Daro_1483 1602182 - 1601649 - | flavodoxin FldA TERM 1481 1602077 - 1602054 - G 78 -10.2 -3.89346 | opp_overlap 1602055 1602059 1602060, overlap 1602055 GTCGTAGGCGAGAAA GTCGGCCAGG GTGA CCCGGCCGAT ATTGACCGGCACGTC TERM 1482 1602076 - 1602055 - G 75 -13.7 -2.93393 | opp_overlap 1602055 1602059 1602060, overlap 1602054 TCGTAGGCGAGAAAG TCGGCCAGG GTGA CCCGGCCGA TATTGACCGGCACGT TERM 1483 1602055 - 1602076 + g 72 -12.3 -3.01791 | gap 1, opp_overlap 1602055 1602054, overlap 1602059 1602060 TCGTAGGCGAGAAAG TCGGCCAGGG TGA CCC-GGCCGA TATTGACCGGCACGT Daro_1484 1602461 - 1602192 - | hypothetical protein TERM 1484 1602479 - 1602507 + r 70 -10.2 -3.14931 | gap 1 TCTCAGGCCCAGACG TCGGCCG-GCGCC AGCA GGCGCTCGACCGG TTGATCGAACATCAG Daro_1485 1602795 - 1602466 - | ferredoxin, 2Fe-2S Daro_1486 1603134 - 1603442 + | hypothetical protein Daro_1487 1605126 - 1603477 - | helix-turn-helix, Fis-type:Nif-specific regulatory protein TERM 1485 1604741 - 1604766 + g 70 -4.6 -4.56597 | opp_overlap 1604727 1604726 TGCGGCTCATCGGCG CCGCGGGCCA GTTTGA TGGTGCGTGG TTTTTCGAGGACCAG Daro_1488 1606708 - 1605113 - | PAS TERM 1486 1606361 - 1606373 + g 73 -4.8 -4.63218 | CCGGTTGAGCAGTTT GCCA GCCCA TGGC TTTTGTTCGGCGAGC TERM 1487 1606811 - 1606795 - H 72 -5.1 -4.56597 | opp_overlap 1606784 1606783 1606795 GTCTTTGGGGAAAAA CGCAC CGTTGTT GTGCG TTTTGCCTCGACTTT TERM 1488 1607501 - 1607549 + G 81 -4.2 -5.00616 | overlap 1607503 CCAGTTTGCCGGAGC CACCATCACGCCGCGCGGCGTC ATGGC GGCGATTCGCGGCGGGCTCGAG TTTTTTGCCGAAAAC Daro_1489 1606902 - 1607591 + | electron transport complex, RnfABCDGE type, G subunit Daro_1490 1607593 - 1608267 + | SoxR-reducing system protein RsxE TERM 1489 1608506 - 1608524 + G 70 -10.2 -3.53012 | opp_overlap 1608506 CTTCATGCTCGACAA CCCGGAAG GTT CGTCCGGG TTTCACGAAGGCGAA Daro_1491 1608264 - 1608806 + | positive regulator of sigma(E), RseC/MucC Daro_1492 1608815 - 1609396 + | electron transport complex, RnfABCDGE type, A subunit TERM 1490 1609457 - 1609503 + F 89 -13.5 -3.28637 | gap 1 CTCACTGTGTTCGCT GCCCCCCAGGGGGGCGCCGCCG CCCT CGG-GGCGGCCCGTCGGGAGGC TTCATCATGTTGATG Daro_1493 1609510 - 1610043 + | electron transport complex, RnfABCDGE type, B subunit Daro_1494 1610054 - 1611565 + | electron transport complex, RnfABCDGE type, C subunit Daro_1495 1611562 - 1612635 + | electron transport complex, RnfABCDGE type, D subunit Daro_1496 1612651 - 1612923 + | hypothetical protein Daro_1497 1612929 - 1614071 + | alanine dehydrogenase/PNT Daro_1498 1614071 - 1614352 + | pyridine nucleotide transhydrogenase subunit alpha Daro_1499 1614352 - 1615722 + | NAD(P) transhydrogenase, beta subunit TERM 1491 1615855 - 1615892 + F 100 -17.3 -5.02476 | opp_overlap 1615845 AGCAAGGGGTGAGAG GCGGTGATTTTTGTC ATGTTGGC GACAAAAATCACCGC TTTTTTGCACCATGT TERM 1492 1616054 - 1616071 + G 72 -2.7 -4.75472 | CGGTCAAAACCATGG TTATCGT TTCG ACGGTGA TTTTGTTCATCTCAA TERM 1493 1616804 - 1616757 - g 90 -14.8 -3.53343 | gap 1, opp_overlap 1616761, overlap 1616781 AAGCCGGTGGTCAAA GCCAGGCCT-GCGGCCAAGCCGA AAG CCGCCGTGGCCGCCAAGCCTGTC GTCGCCGCCAAGGCG Daro_1500 1615953 - 1617065 + | hypothetical protein TERM 1494 1617079 - 1617123 + F 85 -11.6 -3.63627 | gap 1, overlap 1617082 1617084 AAGGCGAATTTGTTG TAAGGGCA-GGGGATTGTCGT ATTC GCGACAATCCTCGTGCTCGTA TTTCCCATATAAAAC TERM 1495 1617082 - 1617120 + F 81 -13.3 -2.63585 | gap 1, overlap 1617079 1617084 GCGAATTTGTTGTAA GGGCA-GGGGATTGTCGT ATTC GCGACAATCCTCGTGCTC GTATTTCCCATATAA TERM 1496 1617084 - 1617118 + F 78 -12.3 -2.85565 | gap 1, overlap 1617082 1617079 GAATTTGTTGTAAGG GCA-GGGGATTGTCGT ATTC GCGACAATCCTCGTGC TCGTATTTCCCATAT TERM 1497 1617301 - 1617262 - g 78 -7.1 -4.61824 | gap 2, opp_overlap 1617285 1617287, overlap 1617264 CAACAAGAAGGAAAA GTCCGGC-T-GCGCCAAGC CCAA GCCTGGCGCCACGGCGGGC GGCTGTTCCTTCGAC TERM 1498 1617644 - 1617660 + G 82 -11.5 -3.85698 | GGGACGCCGGTTGTG CCGGTCG ATG CGGCCGG TTTCTACGGCACCAA TERM 1499 1618372 - 1618339 - g 73 -10.3 -3.60627 | opp_overlap 1618332 CGACGGCAGCCCAAA GGCCTTGCTCTCG ACTTACCA CGAGTACAAGGCC GACATCCTGATCGCC Daro_1501 1617197 - 1618597 + | nitrogenase MoFe cofactor biosynthesis protein NifE Daro_1502 1618904 - 1619581 + | hypothetical protein TERM 1500 1619629 - 1619600 - f 100 -15 -4.81212 | gap 1 CGGACTAGAAGAAAA GCCGG-CCCCGCC TTAAC GGCGGGGTCCGAC TGCCGAAAAAGCCTC TERM 1501 1619635 - 1619664 + F 87 -4.3 -5.31275 | gap 1, opp_overlap 1619640, overlap 1619640 GGGGTCCGACTGCCG AAAAAGCCTCC-GA TCG TCTGGAGGCTTTAG TTTTTTGTAATGCAG TERM 1502 1619659 - 1619640 - f 85 -8.6 -4.58395 | gap 1, opp_overlap 1619640 1619635 CCGACTGCCGAAAAA GCCTCC-GA TCG TCTGGAGGC TTTAGTTTTTTGTAA TERM 1503 1619640 - 1619659 + F 85 -8.6 -4.47686 | gap 1, opp_overlap 1619640, overlap 1619635 CCGACTGCCGAAAAA GCCTCC-GA TCG TCTGGAGGC TTTAGTTTTTTGTAA TERM 1504 1619881 - 1619864 - g 100 -12.7 -5.3658 | opp_overlap 1619864 ATCAGAAAAACAAAA CCCCCGA AAAA TCGGGGG TTCGTCAGCATTCAG TERM 1505 1619864 - 1619881 + G 74 -12.7 -3.16742 | opp_overlap 1619864 ATCAGAAAAACAAAA CCCCCGA AAAA TCGGGGG TTCGTCAGCATTCAG TERM 1506 1619899 - 1619918 + G 75 -7.8 -4.27584 | opp_overlap 1619901 CGTCAGCATTCAGGA GAGCCATC GAAT GATGGCGC TTTTGCATTGGGCGT Daro_1503 1619674 - 1619940 + | hypothetical protein Daro_1504 1620782 - 1619943 - | hypothetical protein TERM 1507 1620317 - 1620351 + g 73 -13.6 -2.70932 | GACCGTTAAAGCTCC CCCCAATGTCAATCCC GAT GTGGTTGCCATTGGGG TCGTTCAGGCCGGAG TERM 1508 1621379 - 1621338 - gH 72 -10.2 -3.28924 | gap 1, opp_overlap 1621344, overlap 1621341 1621344 CACGCTGTCGGACAA GAGCAAGCCGGACATCATC GGTCT GGTGACGACCGGCTTG-TC GGAAACGCAGGGCAC TERM 1509 1621377 - 1621341 - gH 80 -13 -2.52623 | opp_overlap 1621344, overlap 1621338 1621344 GCTGTCGGACAAGAG CAAGCCGGACATCATC GGTCT GGTGACGACCGGCTTG TCGGAAACGCAGGGC Daro_1505 1621069 - 1622472 + | nitrogenase molybdenum-iron cofactor biosynthesis protein TERM 1510 1622746 - 1622726 - gf 72 -6.7 -4.24342 | TCGGCGATCAAGAAA CTGCTGGCC AAG GGCGTGCAG CCGATTCGGGTTGAT Daro_1506 1622435 - 1622914 + | dinitrogenase iron-molybdenum cofactor biosynthesis TERM 1511 1623214 - 1623261 + G 73 -13.4 -2.80016 | gap 1, overlap 1623173 1623210 GGTGTCATGACCGGC GGTGGCGA-TTCTGCGATGGCGC TCG GCGCCGCAGCAGGATTCGTCGCC TCGTTGCTCGTGGCG Daro_1507 1622911 - 1623378 + | positive regulator of sigma(E), RseC/MucC Daro_1508 1623371 - 1623832 + | hypothetical protein Daro_1509 1623848 - 1624066 + | hypothetical protein Daro_1510 1624063 - 1624332 + | 4Fe-4S ferredoxin, iron-sulfur binding TERM 1512 1624412 - 1624354 - g 88 -19 -2.57132 | gap 2, overlap 1624353 CGTTGCCGTCACAAG TTTCCGCCATGGCTGCGCAGGGTGAAGC CGTGT GCATCGCCCTGCGCAGCCA-GGTGGAA- AAACTCGGCCTGTCG Daro_1511 1624335 - 1624691 + | hypothetical protein Daro_1512 1624695 - 1625111 + | hypothetical protein Daro_1513 1625233 - 1625556 + | HesB/YadR/YfhF Daro_1514 1625569 - 1626465 + | Fe-S cluster assembly protein NifU Daro_1515 1626509 - 1627723 + | aminotransferase, class V:aromatic amino acid beta-eliminating lyase/threonine aldolase TERM 1513 1627757 - 1627780 + F 100 -18.2 -5.90981 | GCAGCAACCTCGGTT CGCCCCGGAA GCAA TTCCGGGGCG TTTTTTTTGGTATCC TERM 1514 1628099 - 1628113 + G 80 -3.4 -5.0917 | overlap 1628100 GGTGAAACGTATTTT TGCGTC TGG GGCGCC TTTATTTTTTGCTCG Daro_1516 1627815 - 1628333 + | hypothetical protein Daro_1517 1628685 - 1628425 - | hypothetical protein Daro_1518 1629548 - 1628757 - | oxidoreductase, molybdopterin binding Daro_1519 1630163 - 1629558 - | hypothetical protein Daro_1520 1630305 - 1630877 + | RNA polymerase sigma factor TERM 1515 1631044 - 1631068 + G 71 -7.2 -4.21631 | GCAAGCACTGTTGCT CCCGATGTTT TGGGT AAAGATCGGG TTTGTTGCCTGCCTT Daro_1521 1630898 - 1631515 + | hypothetical protein Daro_1522 1631988 - 1631518 - | hypothetical protein Daro_1523 1632613 - 1631996 - | pyridoxamine 5'-phosphate oxidase-related, FMN-binding Daro_1524 1633184 - 1632642 - | carboxymuconolactone decarboxylase Daro_1525 1633311 - 1634252 + | LysR family transcriptional regulator TERM 1516 1634494 - 1634447 - T 77 -10 -3.63341 | gap 1, opp_overlap 1634460, overlap 1634449 1634460 AATAGCGCGCAACAA TAGCTTTCAGAAAGCCCCGCA TAGTTCC TGCGAGGCTTTCTGT-AGCTG CACAAGTGTTAGCGA TERM 1517 1634492 - 1634449 - T 83 -12.6 -3.39288 | gap 1, opp_overlap 1634460, overlap 1634447 1634460 TAGCGCGCAACAATA GCTTTCAGAAAGCCCCGCA TAGTTCC TGCGAGGCTTTCTGT-AGC TGCACAAGTGTTAGC TERM 1518 1634482 - 1634460 - T 74 -8.4 -3.87641 | opp_overlap 1634460, overlap 1634449 1634447 AATAGCTTTCAGAAA GCCCCGCA TAGTTCC TGCGAGGC TTTCTGTAGCTGCAC Daro_1526 1635486 - 1634503 - | zinc-containing alcohol dehydrogenase superfamily protein TERM 1519 1635560 - 1635537 - R 100 -4.5 -5.61824 | overlap 1635527 1635540 TAAAAGGCAAAAAAA TTAGCCGGG GGGTAA CCCAGCAAA AAAACCTCGTGCAAA Daro_1527 1636175 - 1635537 - | TetR family transcriptional regulator TERM 1520 1635881 - 1635868 - G 71 -9.5 -3.72576 | GCTCCGGCTACGAAA GCGCG TAAA CGCGC GAGCGGAGAGATGGT TERM 1521 1635951 - 1635937 - G 91 -4.2 -5.52384 | TTGCGAGCAAAAAAA TGAGCA TAT TGCGCA ATTAACGCTGCACCG Daro_1528 1637402 - 1636506 - | LysR family transcriptional regulator TERM 1522 1636931 - 1636960 + g 77 -11.4 -3.57144 | TCTGGACCCGTAGTT CTGGCGCTGTCG TCTTGC CGACAACGCCGG TTTCCAGATCGACGA Daro_1529 1637545 - 1638975 + | major facilitator transporter TERM 1523 1639096 - 1639039 - T 78 -11.2 -3.53563 | overlap 1639025 1639071 ACATGCTTTTTCAAA GCTCGGTGCCGAGC-CAGCCGGCGGGTT TAAA ACCCCGCCGCCAATGCT-AGCGCCGAGC CAGGATCAACGAGCC Daro_1530 1640122 - 1639085 - | O-methyltransferase family protein Daro_1531 1640610 - 1640416 - | hypothetical protein TERM 1524 1640682 - 1640660 - R 93 -12 -4.21275 | opp_overlap 1640660 1640662 GTAACCCAGTGAAAA GGCCCTGC GGATTTG GCAGGGCC TCTGGTCTCGCAACA TERM 1525 1640660 - 1640682 + r 75 -12 -2.85351 | opp_overlap 1640660, overlap 1640662 GTAACCCAGTGAAAA GGCCCTGC GGATTTG GCAGGGCC TCTGGTCTCGCAACA Daro_1532 1641221 - 1640709 - | phasin Daro_1533 1641703 - 1641350 - | hypothetical protein TERM 1526 1641907 - 1641931 + r 84 -10.7 -3.75766 | AGGTGCGTTCAGGGC GCCTGCCATTA CCA TGTTGGCAGGC TTGTTCCGTTGTGGA Daro_1534 1642246 - 1641962 - | hypothetical protein Daro_1535 1642364 - 1642936 + | hypothetical protein TERM 1527 1642965 - 1642989 + T 88 -8.6 -4.60041 | GCGAATAGAGGCGAG TCAGGCGC GGAAGGAAG GCGCCTGA TTTTTGAGCGTGACT TERM 1528 1643119 - 1643141 + T 75 -4.8 -4.84359 | overlap 1643115 1643123 GCATGAAACTGGTGT TCGCGCACTT TAT AGGTGCCTGA TTTTTCTCCCAATCC Daro_1536 1644120 - 1643344 - | oxidoreductase FAD/NAD(P)-binding:oxidoreductase FAD-binding region Daro_1537 1644217 - 1645140 + | LysR family transcriptional regulator Daro_1538 1645323 - 1645541 + | hypothetical protein TERM 1529 1645595 - 1645582 - g 75 -2.3 -4.87133 | opp_overlap 1645582 AGGTCGGAAATAAAA TGGCG GTAG CGTCA TTGTCCAGTGGTCAA Daro_1539 1645581 - 1646000 + | hypothetical protein TERM 1530 1646033 - 1646044 + F 100 -7.2 -6.06723 | ATTGTTGTTCGATGG GCGC GTAG GCGC TTTTTTTTTGCCCGG Daro_1540 1646156 - 1646539 + | hypothetical protein Daro_1541 1646518 - 1647075 + | dihydrofolate reductase region TERM 1531 1647151 - 1647137 - g 74 -11.4 -3.51597 | opp_overlap 1647140 AATGCCTAAGCAGAA TGCCCG CTA CGGGCA CCGATTGTGGTTTGC TERM 1532 1647630 - 1647646 + G 76 -5.8 -4.66318 | gap 1, overlap 1647623 1647633 GCCGCCAGGGCTGTT CGTGCCG CTGA CGGC-CG TTTTCTTGGGGTAGT Daro_1542 1647123 - 1650143 + | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) TERM 1533 1650154 - 1650173 + F 73 -4.2 -4.84274 | opp_overlap 1650155 1650165 1650170, overlap 1650155 CCTGAAGCACAAATA ACGCTTGC AAAG GCAAGTGC TTTTTCCTATGATTC TERM 1534 1650223 - 1650165 - f 82 -11.3 -3.56366 | gap 1, opp_overlap 1650155 1650154, overlap 1650155 1650170 AATAACGCTTGCAAA GGCAAGTGCTTTTTCCTATGATTCAAAC GAAC GTATGAATCATAGGAAAAAGT-CATGGC CGAAGTCCGCTCTGT TERM 1535 1650220 - 1650170 - f 95 -13.7 -3.27525 | gap 1, opp_overlap 1650155 1650154, overlap 1650155 1650165 CGCTTGCAAAGGCAA GTG-CTTTTTCCTATGATTCAAAC GAAC GTATGAATCATAGGAAAAAGTCAT GGCCGAAGTCCGCTC Daro_1543 1650219 - 1650935 + | TetR family transcriptional regulator TERM 1536 1651020 - 1651074 + G 100 -22.4 -5.11033 | gap 1, overlap 1651022 GTCACCCTGGTGGCT TTGGTCGGGCTGATGGTCGTTCGGC CAATCC GCCGGACGATCATCA-CCCGACCCA TTTTTTCCACTTATC TERM 1537 1651022 - 1651072 + G 100 -25 -2.78237 | gap 1, overlap 1651020 CACCCTGGTGGCTTT GGTCGGGCTGATGGTCGTTCGGC CAATCC GCCGGACGATCATCA-CCCGACC CATTTTTTCCACTTA TERM 1538 1652486 - 1652463 - g 95 -6.6 -5.31275 | opp_overlap 1652463, overlap 1652464 CCGGATCAGAAAAAA GGCCTGGTCG ACTT CGACAAGGCA CTGTTCGGCCATATC TERM 1539 1652485 - 1652464 - g 76 -10.1 -3.78042 | opp_overlap 1652463, overlap 1652463 CGGATCAGAAAAAAG GCCTGGTCG ACTT CGACAAGGC ACTGTTCGGCCATAT TERM 1540 1652532 - 1652519 - g 74 -3.7 -4.77036 | overlap 1652520 CTTCACCATTAAAAA TGGCC TGAA GGCCC TGTGGCTGGGCATGA fadE 1650972 - 1653326 + | acyl-CoA dehydrogenase Daro_1545 1653308 - 1654615 + | acetyl-CoA acetyltransferase Daro_1546 1654617 - 1655564 + | hypothetical protein TERM 1541 1656038 - 1656066 + G 74 -12.4 -3.14944 | GTGGCATGTTGCGCC TGCCGCAGCGGG TTGGC CCTGCTGCCGCA TTGGATCTGATGCTG TERM 1542 1656203 - 1656161 - g 77 -11.2 -3.64703 | gap 1, opp_overlap 1656141 1656164 1656169 CGCGCGTCATGGAAA TGGCGGCTC-GCCAGCTGG TGTTGT CCGGCCAGCCGCGCCGCCA ACTGCCTTTTGTTCA TERM 1543 1657332 - 1657300 - g 78 -2.7 -5.09426 | gap 3, overlap 1657301 GGCAAGGCTAAAAAA GGCGCAG-CCG-CGGG TGTT CCCGCCGGGCTG-GCA GATCGCTTGGTCAAA Daro_1547 1655575 - 1657488 + | 3-hydroxyacyl-CoA dehydrogenase Daro_1548 1657624 - 1658952 + | aromatic hydrocarbon degradation protein TERM 1544 1658979 - 1658997 + F 100 -11.7 -5.72207 | CCTTGCCTACTTTAA TCCCCGG CTAGT CCGGGGA TTTTTTTGCTTTGAC TERM 1545 1659537 - 1659547 + G 78 -6.8 -4.65895 | TTCGCCCGCGCTTCT GTGG AAT CCAC TTTTTCAATCCGCCG TERM 1546 1660223 - 1660201 - g 71 -7 -4.19238 | gap 1, opp_overlap 1660201 1660207 CGTGCAACTGGAAAA CGTCGC-CG ACAACG CGCGCGACG TCGATTTTGCCATGC TERM 1547 1661038 - 1660988 - g 81 -13.3 -3.33696 | gap 2, opp_overlap 1660987 GGCGGCTGCAAGGAA TTCGCCGTGCGGGCCGCCGAGTGGG CCG CCCAGTCGGCCACCC-CG-GGCGAA GTGTTCAACTTCCTG Daro_1549 1659110 - 1661509 + | 3-hydroxyacyl-CoA dehydrogenase Daro_1550 1661531 - 1662730 + | acetyl-CoA acetyltransferase TERM 1548 1662776 - 1662740 - g 90 -14.3 -3.57561 | opp_overlap 1662743 CTGTAATCCGTGAAA CCCGCCTGGCTGGCCAA GCT TTCGCCGACCTGGCGGG CGCGCATGGTGCGGA Daro_1551 1662734 - 1663249 + | hypothetical protein Daro_1552 1663246 - 1663821 + | putative lipoprotein transmembrane Daro_1553 1663847 - 1665508 + | AMP-dependent synthetase and ligase Daro_1554 1665508 - 1666455 + | 2-nitropropane dioxygenase, NPD Daro_1555 1666480 - 1668273 + | Acyl-CoA dehydrogenase, C-terminal:Acyl-CoA dehydrogenase, central region TERM 1549 1668361 - 1668338 - T 100 -16.8 -4.36411 | opp_overlap 1668338 1668342, overlap 1668342 GAGTAATGATCAAAA GAAAGGCGCC GTAA GGCGCCTTTC TCATATGTGGTCAAA TERM 1550 1668338 - 1668361 + T 100 -16.8 -2.71268 | opp_overlap 1668338 1668342, overlap 1668342 GAGTAATGATCAAAA GAAAGGCGCC GTAA GGCGCCTTTC TCATATGTGGTCAAA TERM 1551 1668357 - 1668342 - T 100 -11.8 -4.74518 | opp_overlap 1668342 1668338, overlap 1668338 AATGATCAAAAGAAA GGCGCC GTAA GGCGCC TTTCTCATATGTGGT TERM 1552 1668342 - 1668357 + T 91 -11.8 -4.04719 | opp_overlap 1668338 1668342, overlap 1668338 AATGATCAAAAGAAA GGCGCC GTAA GGCGCC TTTCTCATATGTGGT Daro_1556 1669867 - 1668401 - | hypothetical protein TERM 1553 1670078 - 1670093 + r 100 -11.8 -5.055 | opp_overlap 1670078 TCAGAGCGTAAAAAA GGCGCC GATT GGCGCC TTTTTTGGGAGTTGG TERM 1554 1670093 - 1670078 - R 100 -11.8 -5.07567 | opp_overlap 1670078 TCAGAGCGTAAAAAA GGCGCC GATT GGCGCC TTTTTTGGGAGTTGG Daro_1557 1671408 - 1670119 - | hypothetical protein Daro_1558 1671672 - 1672283 + | hypothetical protein TERM 1555 1672349 - 1672362 + F 79 -2.3 -5.19879 | CGTTCGTCTTGTGCA CCTGC CTCG GCAAG TTTTTGTGTTTCGCC TERM 1556 1672543 - 1672525 - g 72 -3 -4.74103 | overlap 1672527 GCGGCAAGTGAAAAA GAGCGTGA CCT TCGCGCTT GGGAGACCTTGCTTG Daro_1559 1672417 - 1674513 + | metal-dependent phosphohydrolase Daro_1560 1674519 - 1674824 + | hypothetical protein TERM 1557 1674859 - 1674882 + T 100 -13.2 -4.33621 | gap 1, opp_overlap 1674853 1674852 CGTCGAAAGTGCAAG CGGGGAAGAGC TAA GC-CTTCCCCG TTTCTTCGTTACCTG TERM 1558 1674918 - 1674941 + T 74 -8 -4.07885 | opp_overlap 1674905 1674903 1674902, overlap 1674939 GATCAGAAGTTGATT CTGACCCCGG TGAT CAGGGGGCAG TTTTCGAAACCGATG Daro_1561 1675541 - 1675047 - | thioredoxin Daro_1562 1676365 - 1675538 - | putative ABC-2 type transport system permease protein Daro_1563 1676854 - 1676366 - | hypothetical protein Daro_1564 1677711 - 1676857 - | ABC transporter related TERM 1559 1677774 - 1677829 + r 82 -11.9 -3.53343 | gap 2 TCAAAAATCCGTAAT CTCG-CTCAGCTTTGC-CTGGCCTGCC ATTC GGCAGGCCAGGGCGGTGCTCAGGCCAG TTTGGAAAGGCCCTT Daro_1565 1678804 - 1677821 - | NapH/MauN family ferredoxin-type protein TERM 1560 1678289 - 1678303 + g 100 -10 -5.4505 | GCGGCGGTCCATGGT CTGGTC TGT GACCAG TTTTTTCTTGGCCAG TERM 1561 1678533 - 1678514 - G 73 -9.2 -3.92522 | GTGGAAGCCGACAAA GCGCGATG CGGT CAGCGCGC CTTCGAGAATCTGAA Daro_1566 1679673 - 1678801 - | 4Fe-4S ferredoxin, iron-sulfur binding TERM 1562 1679136 - 1679191 + g 74 -3.3 -4.86731 | GGCAGGCTTCGGGAC GGGTGAGGCGGGCAACAC-CAATACGC TCAT GCAGATTGAGTGTCGGCT-CCTCATCC TTTTCTTTGGCGAGC Daro_1567 1681028 - 1679670 - | periplasmic copper-binding TERM 1563 1680988 - 1681010 + g 72 -13.4 -2.57211 | overlap 1680987 ACCAGTAGGAGTGCG GTGGCCAGGC CGA GCCTGGCCAG ATTGTGCAGGGAACT Daro_1568 1682026 - 1681034 - | hypothetical protein TERM 1564 1682056 - 1682079 + r 100 -16.8 -4.12902 | TGGCGTCGGGGATGT GGTTGCCTGC GATT GCAGGCAACC TTTTCAGCCTACTTC Daro_1569 1682823 - 1682098 - | cytochrome c, class I TERM 1565 1682926 - 1682911 - R 72 -10.4 -3.29144 | TGATGTGGGTCATAA GCCCGT AAAT ACGGGC AATTCCGGGTTATTT Daro_1570 1683244 - 1682936 - | cytochrome c, class I TERM 1566 1683268 - 1683294 + r 100 -16 -4.25681 | opp_overlap 1683268 CCTCCTATATTGAAA CGGGGAACAGAT TGA ATCTGTTCCTCG TTTATTACCTTGAGT TERM 1567 1683294 - 1683268 - R 100 -13.8 -3.70902 | opp_overlap 1683268 CCTCCTATATTGAAA CGGGGAACAGAT TGA ATCTGTTCCTCG TTTATTACCTTGAGT Daro_1571 1685613 - 1683331 - | cytochrome c oxidase, subunit II TERM 1568 1685660 - 1685690 + r 81 -10.4 -3.9398 | TGCATTGAGCCGGGA TTCGAGGTGCGGCA ATG TGTCGCACCGGGAA TTTGTCGCATTGTGC Daro_1572 1686441 - 1685785 - | two component LuxR family transcriptional regulator Daro_1573 1687559 - 1686438 - | response regulator receiver:ATP-binding region, ATPase-like:histidine kinase, dimerization and phosphoacceptor region TERM 1569 1686921 - 1686943 + g 71 -5.4 -4.32482 | overlap 1686939 GGACGCATCGGCGCG CGCTTGGACC TCT GGACCCAGTG TTTTGCATTGTCGAT Daro_1574 1690087 - 1687562 - | PAS/PAC sensor hybrid histidine kinase TERM 1570 1688684 - 1688694 + g 71 -6.8 -4.21974 | opp_overlap 1688681 CTGTTCGAGCAACAG CCGA AGA TCGG TTTCTTCGGTGGTCA TERM 1571 1690181 - 1690204 + r 74 -11 -3.21772 | opp_overlap 1690183, overlap 1690179 1690183 CTACTCAAAAAGAAA AAGGGGCAGA TTGC TCTGCCCCTC TATTGTGCCGCGCTT TERM 1572 1690202 - 1690183 - R 100 -13.6 -5.63236 | opp_overlap 1690181 1690179 1690183 ACTCAAAAAGAAAAA GGGGCAGA TTGC TCTGCCCC TCTATTGTGCCGCGC TERM 1573 1690183 - 1690202 + r 89 -13.6 -3.17146 | opp_overlap 1690183, overlap 1690181 1690179 ACTCAAAAAGAAAAA GGGGCAGA TTGC TCTGCCCC TCTATTGTGCCGCGC Daro_1575 1692510 - 1690228 - | cytochrome c oxidase, subunit II TERM 1574 1692764 - 1692788 + G 82 -12.9 -3.61398 | CGTGCTTGTCGTGGT CATCGGCTACA AGC TGTCGCCGATG TTGTTGCCGAAAGCC Daro_1576 1692705 - 1693175 + | hypothetical protein Daro_1577 1693175 - 1693777 + | electron transport protein SCO1/SenC TERM 1575 1693815 - 1693840 + G 81 -5.4 -4.78107 | gap 1, overlap 1693812 ACTGTCAATGTTCGC CGCTGGCCTGA TGTTC TC-GGCCGGTG TTTTTGCTGGTGCTG TERM 1576 1693906 - 1693922 + G 95 -11.5 -4.4891 | CTGGCGCCGCCCAAT GCGCCGG CTA CCGGTGC TTTTATGGTGATCAA Daro_1578 1693774 - 1694256 + | hypothetical protein TERM 1577 1694319 - 1694285 - T 90 -15 -2.62184 | opp_overlap 1694272 1694287 1694288, overlap 1694307 TCGCTGCCCAGATTA TCCGGGGCGCTCAGTT GAA AACTGAGCGCCCCATT CTTTGGTACTTCAAC TERM 1578 1694287 - 1694317 + T 100 -19.8 -4.04927 | opp_overlap 1694285 1694307, overlap 1694272 1694288 GCTGCCCAGATTATC CGGGGCGCTCAGTT GAA AACTGAGCGCCCCA TTCTTTGGTACTTCA TERM 1579 1694288 - 1694316 + T 100 -23.3 -3.02233 | opp_overlap 1694285 1694307, overlap 1694272 1694287 CTGCCCAGATTATCC GGGGCGCTCAGTT GAA AACTGAGCGCCCC ATTCTTTGGTACTTC Daro_1579 1697620 - 1694339 - | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) TERM 1580 1694525 - 1694488 - G 70 -9.9 -3.47029 | gap 1, opp_overlap 1694462 1694487 1694485 1694482 1694484, overlap 1694482 TTACGGAAAGATGAA GGCTGTTGGCCAACGCCA TGA TGGCGGTGAC-AATAGCC CTGTCATTTTCATTC Daro_1580 1699441 - 1698053 - | sensor histidine kinase TERM 1581 1698092 - 1698102 + g 78 -2.4 -5.03314 | overlap 1698083 GCGAATTCGCAAGCC ACCC TGC GGGC TTTTTTCGAGATCGA TERM 1582 1699390 - 1699370 - G 72 -12.5 -3.07113 | opp_overlap 1699372, overlap 1699372 GATCAGCGGAGTCAA CAGCGCCAG GAT CAGGCGCTG TCTCAGCGACAAGGG Daro_1581 1700096 - 1699425 - | response regulator receiver:transcriptional regulatory protein, C-terminal Daro_1582 1700723 - 1700136 - | NapC/NirT cytochrome c, N-terminal TERM 1583 1700819 - 1700764 - H 100 -22.1 -3.07043 | opp_overlap 1700768 CGCATCATCGCAACA CCTAGCTTGCGAATGCCTGACGAGT TTTCCT ATTCGTCAGGCATTCGCAAGCTTGC CTCGACGAGAATCGC TERM 1584 1700768 - 1700815 + H 100 -28.1 -3.05384 | opp_overlap 1700764 TCATCGCAACACCTA GCTTGCGAATGCCTGACGAGT TTTCCT ATTCGTCAGGCATTCGCAAGC TTGCCTCGACGAGAA Daro_1583 1700864 - 1702270 + | cytochrome c1 precursor protein Daro_1584 1702287 - 1702667 + | cytochrome c, class I TERM 1585 1702698 - 1702726 + T 100 -10.3 -5.46698 | opp_overlap 1702698 CTTGTCTGCAAAAAA GCCCTGACTGA TATTGCT TCCGTCAGGGC TTTTTTCATTTTGGC TERM 1586 1702726 - 1702698 - T 100 -10.3 -5.00616 | opp_overlap 1702698 CTTGTCTGCAAAAAA GCCCTGACTGA TATTGCT TCCGTCAGGGC TTTTTTCATTTTGGC Daro_1585 1703314 - 1702781 - | helix-turn-helix, Fis-type Daro_1586 1704570 - 1703311 - | sensor histidine kinase TERM 1587 1704092 - 1704078 - G 80 -3.5 -5.04325 | CGGAAAGGACAAAAA TCAGC CACAT GCCGA TCAGGTGCAGGCGGG TERM 1588 1704194 - 1704150 - G 83 -2.1 -5.26875 | GTGGCAAGTAAAAAA CCATCAGCAGCG-AGTAGGCG GCGAT CGCC-ACGGCACTGACGACGG CAGCAAAGCGCGCTG TERM 1589 1704307 - 1704288 - G 70 -3.5 -4.63932 | gap 1, overlap 1704292 CACCGCTGAAGAAAA CGATGGCG GTCAG CGCC-CCG ATGTCGAAAAGTAAC Daro_1587 1704658 - 1705320 + | cytochrome c, class I Daro_1588 1705317 - 1705652 + | hypothetical protein Daro_1589 1706192 - 1705644 - | hypothetical protein Daro_1590 1707498 - 1706194 - | putative aminopeptidase 2 TERM 1590 1706383 - 1706397 + g 74 -11.4 -3.54459 | GTGGGCGTATTGCTG GCAGGG CAC CCCTGC TTTGGCACAGATTGC TERM 1591 1706662 - 1706685 + g 71 -9.4 -3.75024 | opp_overlap 1706651, overlap 1706660 GAAACTGCCGCCAGC GCCGGCCGCG CTTT CGCTGCCGAC TTCTTCATGGTCGAA Daro_1591 1708379 - 1707495 - | putative lipase transmembrane protein Daro_1592 1709103 - 1708387 - | DNA polymerase III, epsilon subunit:DNA polymerase 3, epsilon subunit Daro_1593 1709559 - 1709113 - | ribonuclease H Daro_1594 1710265 - 1709549 - | generic methyl-transferase TERM 1592 1709633 - 1709651 + g 74 -12.4 -3.14132 | TTTTGGGGTGATCAG GCGCATGC TGT GCGTGCGC TTGATGGCCCGCAGC TERM 1593 1710144 - 1710126 - G 82 -8.8 -4.36914 | TTGGCGCGCAGAAAA TCGCCCTG AGG CAGGCCGA GTTGCAAGGCGTTGA TERM 1594 1710645 - 1710657 + G 87 -10.5 -4.3739 | CACTTGGCCTATTAC GCGCC GGG GGCGC TTTTGTGCGGCGATA TERM 1595 1711062 - 1711048 - g 73 -4.2 -4.59511 | overlap 1711050 AAGATCGTTCAAAAA CGGCAA TTT TTGCGG CTATCCGCAGTTGGC Daro_1595 1710294 - 1711091 + | Beta-lactamase-like Daro_1596 1711480 - 1711088 - | response regulator receiver Daro_1597 1712436 - 1711495 - | response regulator receiver modulated diguanylate cyclase TERM 1596 1712149 - 1712160 + g 81 -5.8 -4.74706 | opp_overlap 1712138 GTAATCGTCGCCCCC GGCA GCAA TGCC TTTTTCAATATTGGC Daro_1598 1712864 - 1712466 - | hypothetical protein TERM 1597 1712507 - 1712492 - G 73 -4.7 -4.63486 | overlap 1712479 AGCTGCTGAAGAAAA GCAGT GCGCCG ACTGC AATGCTAATGGCCGT Daro_1599 1712941 - 1716315 + | hypothetical protein Daro_1600 1716322 - 1717656 + | hypothetical protein TERM 1598 1717680 - 1717664 - g 74 -10.9 -3.52919 | ACGAGTGAATTAGAA GTTGCCT ACA AGGCAAC GACCTATCGGGTGTA Daro_1601 1717640 - 1718071 + | hypothetical protein Daro_1602 1718068 - 1720440 + | protein kinase:GAF TERM 1599 1720558 - 1720575 + T 85 -11.3 -3.62478 | opp_overlap 1720558 GAAGGGGCAAAAAAA TACCCGC AGCA GCGGGTA TTTGGGAATTGGTTC TERM 1600 1720575 - 1720558 - T 100 -11.3 -5.43866 | opp_overlap 1720558 GAAGGGGCAAAAAAA TACCCGC AGCA GCGGGTA TTTGGGAATTGGTTC Daro_1603 1721372 - 1720599 - | putative competence lipoprotein precursor TERM 1601 1721776 - 1721752 - g 79 -9.2 -4.24342 | CTCGTCATCAACAAA CCGGCCGGAC TGGTG GTCCACCCGG GTAGCGGCAATTGGA Daro_1604 1721425 - 1722381 + | ribosomal large subunit pseudouridine synthase D Daro_1605 1722374 - 1723111 + | hypothetical protein Daro_1606 1723140 - 1723907 + | Zinc transporter ZIP Daro_1607 1724176 - 1723949 - | hypothetical protein TERM 1602 1724227 - 1724200 - H 85 -8.5 -4.56597 | gap 1, opp_overlap 1724206 GTGTCGCCCCAAAAA GCTAAAGCCCGC ACTTG GCGAGCTTT-GC GGTGATGAGGCTGGG TERM 1603 1724976 - 1724951 - g 73 -9.7 -3.99324 | GCTGAGGATGAGAAA GCCAAGGAACG CATG CGTTTCCTGGC TCGCCAGGTCGCCGA Daro_1608 1724507 - 1726288 + | Poly(R)-hydroxyalkanoic acid synthase, class I Daro_1609 1726311 - 1727051 + | 3-oxoacyl-[acyl-carrier-protein] reductase Daro_1610 1727102 - 1727845 + | acetoacetyl-CoA reductase TERM 1604 1727919 - 1727883 - T 91 -11 -4.28361 | opp_overlap 1727893, overlap 1727887 1727893 TGAAGCGCATGAAAA CAAAGAAAAAGCCCTG TAAAT CAGGGCTTTTTTATTG CCATTCTTGGTTGTT TERM 1605 1727915 - 1727887 - T 95 -10.4 -4.72007 | opp_overlap 1727893, overlap 1727883 1727893 GCGCATGAAAACAAA GAAAAAGCCCTG TAAAT CAGGGCTTTTTT ATTGCCATTCTTGGT TERM 1606 1727893 - 1727909 + T 100 -9.4 -5.4756 | opp_overlap 1727887 1727883 1727893 GAAAACAAAGAAAAA GCCCTG TAAAT CAGGGC TTTTTTATTGCCATT TERM 1607 1727909 - 1727893 - T 100 -9.4 -5.59962 | opp_overlap 1727893, overlap 1727887 1727883 GAAAACAAAGAAAAA GCCCTG TAAAT CAGGGC TTTTTTATTGCCATT Daro_1611 1728698 - 1727934 - | hypothetical protein TERM 1608 1729588 - 1729603 + H 100 -11.8 -5.79526 | opp_overlap 1729587 AATGCAACAGGGAAG GGCGCC TCCG GGCGCC TTTTTTTTACGCTAT Daro_1613 1729660 - 1730220 + | polyhydroxyalkanoate synthesis repressor PhaR TERM 1609 1730546 - 1730573 + F 82 -2.8 -5.252 | gap 1 TGTGGTTTGGCTCGT CTGTTA-ATCAGG AGG CTTGATCTGGCAG TTTTTTGTGCCAATG TERM 1610 1730916 - 1730957 + G 80 -10.9 -3.70902 | opp_overlap 1730924, overlap 1730924 TGTGGATATTCCTGT CCGACCAATTGATGTCGGC ATTT GCCGACATCAATTCCATGG TTTGGCTATCAACAG TERM 1611 1730949 - 1730924 - g 85 -16.3 -3.14132 | opp_overlap 1730924 1730916 TTCCTGTCCGACCAA TTGATGTCGGC ATTT GCCGACATCAA TTCCATGGTTTGGCT TERM 1612 1730924 - 1730949 + G 85 -16.3 -3.16608 | opp_overlap 1730924, overlap 1730916 TTCCTGTCCGACCAA TTGATGTCGGC ATTT GCCGACATCAA TTCCATGGTTTGGCT Daro_1614 1730792 - 1733413 + | PAS/PAC sensor hybrid histidine kinase Daro_1615 1734527 - 1733571 - | mandelate racemase/muconate lactonizing protein Daro_1616 1735348 - 1734524 - | naphthoate synthase TERM 1613 1735228 - 1735259 + g 74 -12.3 -3.24902 | gap 1 ATTCACTGACGGTCT CCGGGCGGAA-GGC ATTGC GCCGTTCCGGCCGG TTGATGGTGATCTTG Daro_1617 1735982 - 1735500 - | hypothetical protein TERM 1614 1735892 - 1735919 + g 75 -8.6 -4.19624 | gap 1, overlap 1735878 1735886 1735900 TGATCTTGGCGATTT CGAGATCGTTGAT GTA ATCGACGAT-TCG TTTGTGTTGGGCGTC TERM 1615 1736196 - 1736213 + H 73 -4.1 -4.85599 | CTCAAGAGAAGCTTG GCTCGAA TGGC TTCAAGC TTTTTGTCCGATGCA Daro_1618 1736340 - 1736687 + | hypothetical protein Daro_1619 1737008 - 1736697 - | acetolactate synthase 1 regulatory subunit Daro_1620 1738680 - 1737010 - | acetolactate synthase catalytic subunit TERM 1616 1738725 - 1738762 + r 93 -13.3 -3.58133 | opp_overlap 1738731, overlap 1738709 1738726 CGGTGGGGCTCCAAA ACAAAACCCCCGCCGGT TTGC GCCGGCGGGGGTTGGGG TTCTGTGCTGCTTCT TERM 1617 1738726 - 1738761 + r 100 -16.8 -2.74157 | opp_overlap 1738731, overlap 1738709 1738725 GGTGGGGCTCCAAAA CAAAACCCCCGCCGGT TTGC GCCGGCGGGGGTTGGG GTTCTGTGCTGCTTC TERM 1618 1738756 - 1738731 - R 100 -19 -5.07652 | opp_overlap 1738709 1738726 1738725 GGCTCCAAAACAAAA CCCCCGCCGG TTTGCG CCGGCGGGGG TTGGGGTTCTGTGCT Daro_1621 1739427 - 1739047 - | hypothetical protein Daro_1622 1741882 - 1739474 - | PAS Daro_1623 1742158 - 1743435 + | response regulator receiver modulated diguanylate cyclase TERM 1619 1743451 - 1743481 + F 100 -17 -3.84996 | opp_overlap 1743453 1743458, overlap 1743458 GCCATTTTTTATATA TAGAAAAGCCGGCA CAA TGCCGGCTTTTCCA TTTGGGTTATCTGTT TERM 1620 1743479 - 1743453 - f 100 -19.6 -2.9914 | opp_overlap 1743451 1743458, overlap 1743458 CATTTTTTATATATA GAAAAGCCGGCA CAA TGCCGGCTTTTC CATTTGGGTTATCTG TERM 1621 1743458 - 1743474 + F 100 -13.7 -4.37198 | opp_overlap 1743453 1743458, overlap 1743451 TTTATATATAGAAAA GCCGGCA CAA TGCCGGC TTTTCCATTTGGGTT TERM 1622 1743474 - 1743458 - f 100 -13.7 -4.64844 | opp_overlap 1743458 1743451, overlap 1743453 TTTATATATAGAAAA GCCGGCA CAA TGCCGGC TTTTCCATTTGGGTT Daro_1624 1743598 - 1745256 + | hypothetical protein Daro_1625 1746065 - 1745274 - | hypothetical protein Daro_1626 1746583 - 1746101 - | hypothetical protein TERM 1623 1746688 - 1746705 + r 93 -8.3 -4.86731 | opp_overlap 1746689, overlap 1746689 GCTCCCCAAAAAGAA ACCCGGC CGAA GCCGGGC TTTTGTTTGGGGCAA TERM 1624 1746704 - 1746689 - R 100 -11.8 -4.85782 | opp_overlap 1746688 1746689 CTCCCCAAAAAGAAA CCCGGC CGAA GCCGGG CTTTTGTTTGGGGCA TERM 1625 1746689 - 1746704 + r 82 -11.8 -3.51557 | opp_overlap 1746689, overlap 1746688 CTCCCCAAAAAGAAA CCCGGC CGAA GCCGGG CTTTTGTTTGGGGCA Daro_1627 1748261 - 1746729 - | fumarase Daro_1628 1748814 - 1748275 - | hypothetical protein Daro_1629 1749087 - 1751051 + | acetyl-CoA synthetase TERM 1626 1751097 - 1751057 - f 91 -9 -4.65747 | gap 1, overlap 1751088 GAAGGGCTAAGAAAA TGG-TGCCGGGTTTCGCCC CAAC AGGCAAAACCCGGTTGCCA GCGGACTGCCTTCGG TERM 1627 1751165 - 1751137 - f 76 -7.4 -4.24948 | opp_overlap 1751142, overlap 1751138 GCAGCACAGTCAAAA GGAAATGGCGCG CTTGC CTCGCCATTTCT ATCAAACAAGGGGCA TERM 1628 1751164 - 1751138 - f 74 -10.9 -3.14487 | opp_overlap 1751142, overlap 1751137 CAGCACAGTCAAAAG GAAATGGCGCG CTTGC CTCGCCATTTC TATCAAACAAGGGGC TERM 1629 1751246 - 1751272 + F 100 -21.6 -5.45802 | GACTGCATTCCCGGA CGGCTGGCACGC TTG GCGTGCCGGCCG TTTTTATTTTGCACG Daro_1630 1751296 - 1751490 + | hypothetical protein TERM 1630 1754047 - 1754032 - g 73 -4.7 -4.58395 | GTCATTTTCGAAAAA TTCCG TCAGGG CGGAA ATACCTTGACCGGCA Daro_1631 1751491 - 1754202 + | sensor histidine kinase TERM 1631 1754332 - 1754291 - g 85 -5.7 -5.14563 | gap 1, overlap 1754293 1754294 1754331 TTCTTGATGAAAAAA GAGGGCTTCGCTGTCG-CCG TCG CGGTCGACGGCGAAGAAGCC TTGGCCAAGGTGGCC Daro_1632 1754219 - 1754590 + | response regulator receiver TERM 1632 1756090 - 1756079 - g 78 -7.2 -4.60487 | opp_overlap 1756079 1756081, overlap 1756080 1756081 TATCAGCGCGAAAAA GCGG CGCA CCGC GCCTACTTCCGTTTC Daro_1633 1754660 - 1756825 + | DNA polymerase III, epsilon subunit Daro_1634 1756833 - 1757888 + | hypothetical protein TERM 1633 1757951 - 1757939 - g 71 -9.1 -3.75437 | AATCAGGGCAGGAAA TGGCC GTG GGCCA AGTGGAAATGACACT TERM 1634 1758119 - 1758137 + G 71 -5.3 -4.33819 | gap 1, overlap 1758111 GCCAGATCATCGGGC CGGAC-TC CGGC GATGTCCG TTTCTTCTACCTGAT Daro_1635 1757938 - 1759878 + | cyclic nucleotide-binding/CBS/putative nucleotidyltransferase TERM 1635 1759959 - 1759999 + G 79 -8.7 -4.2558 | overlap 1759960 CGTGCCTCGCTTGAG GGCTGGCGGGCCAGTGCCG CTC CGGCGCTGGACGACCTGCA TTTTCATACCCGCTA TERM 1636 1759960 - 1759998 + G 74 -12.2 -3.15027 | overlap 1759959 GTGCCTCGCTTGAGG GCTGGCGGGCCAGTGCCG CTC CGGCGCTGGACGACCTGC ATTTTCATACCCGCT Daro_1636 1759881 - 1760546 + | hypothetical protein Daro_1637 1760556 - 1762592 + | Na+/solute symporter Daro_1638 1762589 - 1762840 + | membrane protein Daro_1639 1762850 - 1763119 + | hypothetical protein TERM 1637 1763260 - 1763277 + T 100 -11.3 -6.01725 | opp_overlap 1763253 1763260 AGTTATAACATCTAA GCCCATG GTTT CATGGGC TTTTTTGTTTTTATT TERM 1638 1763277 - 1763260 - T 77 -11.3 -3.21993 | opp_overlap 1763260, overlap 1763253 AGTTATAACATCTAA GCCCATG GTTT CATGGGC TTTTTTGTTTTTATT Daro_1640 1764221 - 1763595 - | hypothetical protein TERM 1639 1763961 - 1763973 + g 76 -9.1 -4.01419 | overlap 1763956 ATTCCGTTCAGGCAG GAGCG AAA CGCTC TTTCCTTCCTTACTG Daro_1641 1765443 - 1764277 - | hypothetical protein TERM 1640 1765070 - 1765088 + g 73 -4.5 -4.64861 | opp_overlap 1765070 CCCCATTCAATAAAT CTGGCGT CGTAC AGGCCAG TTTCTTTTGCGCACG Daro_1642 1766483 - 1765437 - | hypothetical protein TERM 1641 1765504 - 1765514 + g 71 -6.8 -4.1822 | opp_overlap 1765503 GAATTGAAGCAAATG CCGA AAT TCGG TTTATTGGGCTGGCC TERM 1642 1767831 - 1767805 - R 100 -13.1 -4.81249 | gap 1, opp_overlap 1767798 GCTCAAATTGAAAAA TGGCCGGTTCTG ATTC CAGA-CCGGCCA TTGGCATCTTTAGGG TERM 1643 1767977 - 1767945 - R 75 -11.9 -3.06133 | opp_overlap 1767947 GAACGTTGTAGGTAA GGGGCGCTGCGCG GCTTTAT CGCGCAGCGTCCA GCGACCGAAGGGAGC Daro_1643 1768368 - 1768033 - | hypothetical protein Daro_1644 1769699 - 1768791 - | regulatory protein, LysR:LysR, substrate-binding TERM 1644 1769436 - 1769404 - G 70 -10 -3.55622 | opp_overlap 1769418 1769426 GCCAATGCCGGCAAA CACGCAATGCG-CAAG TGA CCTGTCGC-TTGCGTG CGCAATTCGCTGGCG Daro_1645 1769769 - 1771019 + | diaminopimelate decarboxylase TERM 1645 1771516 - 1771478 - T 76 -11.1 -3.29511 | gap 1, opp_overlap 1771475 1771484 TTCACCGTCTCAGAA TGGCAATGGCCGG-TCTG TACT CAGAACCGGCCATTTTCA TTGAGCTCGCTACCG TERM 1646 1771484 - 1771510 + T 100 -13.1 -4.42238 | gap 1, opp_overlap 1771478, overlap 1771475 GTCTCAGAATGGCAA TGGCCGG-TCTG TACT CAGAACCGGCCA TTTTCATTGAGCTCG TERM 1647 1771910 - 1771888 - T 70 -9.8 -3.23216 | overlap 1771894 1771896 CCGCATCATCATCAA GCACAAGAGC GAC GCCCCCGTGC CCGCCCATTTCTATC Daro_1646 1773020 - 1772415 - | hypothetical protein Daro_1647 1773161 - 1774927 + | hypothetical protein TERM 1648 1774947 - 1774928 - T 71 -9.2 -3.49425 | AAGAACAAGGGATAA GCCGTTCG CTGC CGATCGGC GGATCGGCGATGAGT Daro_1648 1775387 - 1775166 - | histone-like DNA-binding protein Daro_1649 1776049 - 1775747 - | hypothetical protein Daro_1650 1776499 - 1776056 - | hypothetical protein Daro_1651 1776719 - 1777282 + | hypothetical protein TERM 1649 1777547 - 1777515 - g 74 -12.1 -3.25942 | opp_overlap 1777515, overlap 1777521 ATCCGGGGACATCAA GGACAACCTGAAAGC CAT GGTTTCAGATTGCCC TCTGATTAAGGTGAG TERM 1650 1778025 - 1778037 + G 74 -6.3 -4.47485 | CCCGACCAATTTTAA TTTGC GGG GCAAA TTTTATGAGATTTTT Daro_1652 1777414 - 1778148 + | hypothetical protein TERM 1651 1778149 - 1778169 + T 85 -14 -2.73364 | TTCTCTGCGGGTTAA GCCGCTGC GGCGA GCAGCGGC TGGTTGAAGTAAGCC Daro_1653 1778972 - 1778145 - | integrase catalytic subunit Daro_1654 1779271 - 1778969 - | transposase IS3/IS911 TERM 1652 1779713 - 1779678 - H 100 -19.9 -4.30576 | gap 1, opp_overlap 1779678 CGCTGACCACTAAAA CCCCGGATCAAC-CGC TGCTT GCGTGTTGATCCGGGG TTTTTGCCGTAGACG TERM 1653 1779678 - 1779713 + H 100 -19.9 -4.62069 | gap 1, opp_overlap 1779678 CGCTGACCACTAAAA CCCCGGATCAAC-CGC TGCTT GCGTGTTGATCCGGGG TTTTTGCCGTAGACG TERM 1654 1779919 - 1779945 + G 82 -10.9 -3.86015 | gap 1 GCACTTGGTGCCATT GCCGGT-CCGCT TGGC AGCGGTATCGGC TTTCTGGCCGGCGTC Daro_1655 1779763 - 1780104 + | hypothetical protein Daro_1656 1780140 - 1781096 + | hypothetical protein TERM 1655 1781131 - 1781157 + F 100 -11.7 -5.36441 | gap 1, opp_overlap 1781131, overlap 1781123 ATCCCACCCAAGCAA TGCCTGGTCTCT CCAG AGAG-CCAGGCA TTTTTTATGTCCAAG TERM 1656 1781157 - 1781131 - f 80 -11.7 -3.37522 | gap 1, opp_overlap 1781123 1781131 ATCCCACCCAAGCAA TGCCTGG-TCTC TCCA GAGAGCCAGGCA TTTTTTATGTCCAAG TERM 1657 1781954 - 1781991 + G 70 -10.8 -3.53761 | opp_overlap 1781925 1781989 CCACCTTTGCCGATT GGCTCTCGGTA-CGGCAA ACCC TTGCTGATACCGA-AGCC TTTGAAGCCCAGTTG Daro_1657 1781164 - 1782192 + | hypothetical protein TERM 1658 1782214 - 1782258 + F 70 -10 -3.14564 | gap 1, opp_overlap 1782217, overlap 1782217 TTCACACACCCCAAA AAACCATCCCGGCCTC-GCTC TGAT GAGCTGAGGTCGGAATGGTCA TTGATAGAGGAGTAC TERM 1659 1782255 - 1782217 - f 100 -16.1 -5.08169 | gap 1, opp_overlap 1782214 1782217 ACACACCCCAAAAAA CCATCCCGGCCTC-GCTC TGAT GAGCTGAGGTCGGAATGG TCATTGATAGAGGAG TERM 1660 1782217 - 1782255 + F 100 -16.1 -2.77899 | gap 1, opp_overlap 1782217, overlap 1782214 ACACACCCCAAAAAA CCATCCCGGCCTC-GCTC TGAT GAGCTGAGGTCGGAATGG TCATTGATAGAGGAG Daro_1658 1782278 - 1783195 + | hypothetical protein TERM 1661 1783203 - 1783230 + F 71 -10.6 -2.91264 | overlap 1783226 AGGGGTGAGAGACGG GCTTTCCTGGAC TTTG GTCTGGGGAAGC TCTGTGGCTCGGGGA TERM 1662 1783226 - 1783250 + F 86 -3.5 -5.40072 | overlap 1783203 GGACTTTGGTCTGGG GAAGCTCTGTG GCT CGGGGAGTTTC TTTTTTTGGGCCAGC Daro_1659 1783339 - 1783623 + | histone-like DNA-binding protein Daro_1660 1783620 - 1784006 + | hemerythrin HHE cation binding region Daro_1661 1785230 - 1784433 - | response regulator receiver TERM 1663 1784958 - 1784937 - G 78 -10.1 -3.85698 | GGGCTTGCGGATAAA GCCGGATGC GCCG GCATCCGCC GCCAGACCTTCCACG Daro_1662 1787858 - 1785396 - | diguanylate cyclase with PAS/PAC sensor TERM 1664 1787120 - 1787147 + g 93 -8.4 -4.91109 | opp_overlap 1787125 CTTCCTGAGATTCTT GGAAACGCTGAA TGAA TTCCGCGGTTCC TTTTTGTCCTACAAA TERM 1665 1788640 - 1788620 - g 89 -10.5 -4.70319 | overlap 1788630 CTATGAAAAGCAAAA TTGGGTAAC AGC GTCACCCAA CGGTGGCGGTCATAG Daro_1663 1788258 - 1788698 + | hypothetical protein TERM 1666 1788765 - 1788717 - f 93 -15.4 -2.53382 | gap 1, opp_overlap 1788725 ATGAGGCCCAACCCA TCATTCGAGCGGACCTTGCGCGA AAAG CCGCGCAAGG-CCGCTCAATTCA AACGTTAGGCATCCT TERM 1667 1788725 - 1788757 + F 95 -17.1 -2.53213 | gap 1, opp_overlap 1788717 CAACCCATCATTCGA GCGGACCTTGCGCG AAAAGC CGCGCAAGG-CCGC TCAATTCAAACGTTA TERM 1668 1789823 - 1789775 - g 81 -13.2 -3.35639 | gap 1, opp_overlap 1789771 1789783, overlap 1789778 AAGATGCCCAACCAA TCATTCCACCGGACCTGTCGCGG CAAG CCGCGCCAG-TCCGGTGAATTCA AACGTTATGCCGCAA TERM 1669 1789820 - 1789778 - g 79 -14.9 -2.84276 | gap 1, opp_overlap 1789771 1789783, overlap 1789775 ATGCCCAACCAATCA TTCCACCGGACCTGTCGCGG CAAG CCGCGCCAG-TCCGGTGAAT TCAAACGTTATGCCG TERM 1670 1789783 - 1789815 + G 78 -15.6 -2.53213 | gap 1, opp_overlap 1789778 1789775, overlap 1789771 CAACCAATCATTCCA CCGGACCTGTCGCGG CAAG CCGCGCCAG-TCCGG TGAATTCAAACGTTA Daro_1664 1788790 - 1789818 + | hypothetical protein TERM 1671 1789855 - 1789843 - T 90 -7.7 -5.02074 | opp_overlap 1789842 TTATGCCGCAAAAAA CTGAG CAC CTCAG CCTTGCTCTCGTTGT Daro_1665 1790853 - 1789912 - | response regulator receiver modulated diguanylate cyclase TERM 1672 1790018 - 1790059 + g 81 -4.9 -4.91109 | gap 1, opp_overlap 1790000, overlap 1790022 1790023 GCCGCGACTGCACAG CGCACGCCGCCGGCAGAGAT GCT AACCCGGCCGCCGGCAT-CG TTTTTCTCATGCGGC TERM 1673 1790579 - 1790549 - G 71 -9.6 -3.83502 | opp_overlap 1790548 1790547 GATTTGGACATGAAA TCGTCACCGCCGGC TTC GATGGCGGTGATGA GGTTTTCGGCAGTGT TERM 1674 1792009 - 1792025 + G 85 -3.6 -5.41746 | overlap 1792011 TTGGGTGCCAACTTT CCGGGA AATCC TCCCAG TTTTTTTGCGAAATT TERM 1675 1793125 - 1793105 - g 74 -3.9 -4.85599 | overlap 1793106 1793108 GCTACCCGACAAAAA TTAGTCGAG ACG CTCGACGAC TTGGAACAACATAAA Daro_1667 1791962 - 1793920 + | sensor histidine kinase TERM 1676 1794311 - 1794340 + G 85 -12.1 -3.74872 | opp_overlap 1794307 1794308 TACGAAATTAAGTGG GTGCCGCCAGATG GTGT CATCAAGCGGCAC TTTGGTCAGGTGACT Daro_1668 1794290 - 1794661 + | hypothetical protein Daro_1669 1795088 - 1795789 + | Crp/FNR family transcriptional regulator Daro_1670 1796211 - 1795810 - | hypothetical protein Daro_1671 1797408 - 1796704 - | ABC transporter related Daro_1672 1798603 - 1797410 - | hypothetical protein Daro_1673 1799790 - 1798600 - | secretion protein HlyD Daro_1674 1800392 - 1799787 - | TetR family transcriptional regulator Daro_1675 1801945 - 1800686 - | Phage integrase TERM 1677 1801125 - 1801140 + g 77 -3.2 -5.011 | overlap 1801126 GCCTTCATGCGTTCT GCTGGA ATCG TCCAGA TTTTGTTCTTTCGGT TERM 1678 1801728 - 1801738 + g 74 -3.2 -4.8543 | GTCAGTAGCTTCCGG GCAT CGA GTGC TTTTTGTCGCGCTTC TERM 1679 1802108 - 1802088 - H 90 -7.5 -4.77165 | overlap 1802090 TGTTGGACAACAAAA TAGCGGACG CCT CCTCCGCCA GAATTCGATGCAAAA TERM 1680 1802106 - 1802090 - H 74 -7.9 -4.00512 | overlap 1802088 TTGGACAACAAAATA GCGGACG CCT CCTCCGC CAGAATTCGATGCAA TERM 1681 1802117 - 1802147 + H 100 -19.9 -3.88559 | opp_overlap 1802124, overlap 1802124 TCCGCCAGAATTCGA TGCAAAACGGCCC TTTCC GGGCCGTTTTGCA TTTCTGCCCATCGTT TERM 1682 1802140 - 1802124 - H 91 -10.8 -4.19704 | opp_overlap 1802117 1802124 GAATTCGATGCAAAA CGGCCC TTTCC GGGCCG TTTTGCATTTCTGCC TERM 1683 1802124 - 1802140 + H 93 -10.8 -4.39571 | opp_overlap 1802124, overlap 1802117 GAATTCGATGCAAAA CGGCCC TTTCC GGGCCG TTTTGCATTTCTGCC TERM 1684 1804325 - 1804336 + G 72 -2.2 -4.74215 | CTTGCGAAAAATACT TCGC GATG GTGA TTTTCTTGGTCGTCT Daro_1676 1802412 - 1805402 + | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) TERM 1685 1806034 - 1806053 + G 70 -10 -3.53343 | GTTTTGATGGCCTTG CTGCTCGG TGTC CTGAGCAG TTTCGACGCACCATT TERM 1686 1806070 - 1806089 + G 74 -7.2 -4.37886 | gap 1, overlap 1806070 1806071 TTCGACGCACCATTA C-GCCAATC GCT GATTGGCAG TTTTGTCGGCAGTCG TERM 1687 1806837 - 1806849 + G 100 -5.5 -5.77677 | GCTGTTGCTTGAAGG GGGCA TCC TGCTC TTTTTTGTTGTTTTC Daro_1677 1805629 - 1806936 + | hypothetical protein Daro_1678 1806926 - 1807363 + | ATP:cob(I)alamin adenosyltransferase argD 1807418 - 1808605 + | bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein Daro_1680 1808843 - 1809235 + | response regulator receiver TERM 1688 1809289 - 1809242 - T 75 -11.4 -2.90075 | opp_overlap 1809259, overlap 1809259 GCCGTCTGAATGATA TTTCCCCTCATAAAAAAGCGCC AGAA GGCGCTTTTTTATGAGTCGAGC CCGCATTTAGCCGCG TERM 1689 1809259 - 1809272 + T 100 -9.5 -5.28176 | opp_overlap 1809242 1809259 TCCCCTCATAAAAAA GCGCC AGAA GGCGC TTTTTTATGAGTCGA TERM 1690 1809272 - 1809259 - T 100 -9.5 -5.24129 | opp_overlap 1809259, overlap 1809242 TCCCCTCATAAAAAA GCGCC AGAA GGCGC TTTTTTATGAGTCGA Daro_1681 1810102 - 1809296 - | inositol monophosphatase TERM 1691 1809818 - 1809799 - G 73 -10 -3.65351 | CGAGTGCGATCGAAA CGGCATAC TGCG GCATGCCG TGAATGAAGTTGGTC TERM 1692 1810138 - 1810119 - H 81 -12.8 -3.24021 | opp_overlap 1810119 1810116, overlap 1810114 GGCTTAAAGAGCTAA CGGGCGGC AAGT GCCACCCG ATATATATTTGAAAG TERM 1693 1810393 - 1810405 + G 73 -10.5 -3.66654 | opp_overlap 1810388 ATTGAAGGAAGCACT GGCCG GGA CGGCC TTTGCCGTTGCACTG Daro_1682 1810169 - 1810933 + | RNA methyltransferase TrmH, group 1 TERM 1694 1810924 - 1810911 - T 70 -3.7 -4.68424 | overlap 1810912 CAACCCAGGTAAAAA CCGGC CACG GCCGC AAGAGCTAAGCGCAA Daro_1683 1811839 - 1810940 - | HDIG TERM 1695 1811863 - 1811845 - R 77 -5.9 -4.69053 | opp_overlap 1811856 1811858, overlap 1811840 CATTATTCAACAAAA CCCCGCC TTGTG GGCAGAG GCCGTTTGCTGTGTG Daro_1684 1814085 - 1811932 - | TonB-dependent receptor TERM 1696 1812687 - 1812673 - G 74 -7.1 -4.37886 | CCAGTTGGCATAAAA CTCGG TCGGG CCGAG CAAAGCGAAGGGGCC TERM 1697 1814252 - 1814234 - R 74 -10.2 -3.43338 | opp_overlap 1814234 AGCGACACCAAGCAA CAGGCCGG TCT CCGGGCTG GCAAGTCTTGAAGTG Daro_1685 1815543 - 1814563 - | precorrin-3 methyltransferase TERM 1698 1815007 - 1815017 + g 75 -8.2 -4.21936 | GACGATCTGCTGGGT GCGG CGA CCGC TTTTCGGGTTGTACA Daro_1686 1815935 - 1815540 - | cobalamin (vitamin B12) biosynthesis CbiG protein TERM 1699 1815592 - 1815602 + g 70 -3.2 -4.68593 | CGCCCATCCGGGCCG CGCA ACT TGTG TTTTTCGATGATCAA Daro_1687 1816675 - 1815932 - | cobalamin (vitamin B12) biosynthesis CbiG protein TERM 1700 1816361 - 1816418 + g 70 -3.9 -4.62069 | gap 1, opp_overlap 1816373, overlap 1816363 1816369 GTGCCCCGACAGCAT CG-GGATGACGAACTTGCCGGCTTCGTC GAT GACGACGACGGCCGGGTCGGTTTCCTTG TTTTTCAAATGCGGC TERM 1701 1816363 - 1816415 + g 82 -8.9 -4.42748 | opp_overlap 1816373, overlap 1816361 1816369 GCCCCGACAGCATCG GGATGACGAACTTGCCGGCTTCGTC GAT GACGACGACGGCCGGGTCGGTTTCC TTGTTTTTCAAATGC TERM 1702 1816597 - 1816643 + g 70 -9.9 -3.50722 | opp_overlap 1816594, overlap 1816595 1816598 CGGGGGTGAAGAGTT GGGCGCCGGGCAGGGCGGCAA CGACC TTGCCGGCCAGCGCGATGCCA TGTTTGGTGATTGAA TERM 1703 1816598 - 1816642 + g 73 -13.4 -2.69951 | opp_overlap 1816594, overlap 1816597 1816595 GGGGGTGAAGAGTTG GGCGCCGGGCAGGGCGGCAA CGACC TTGCCGGCCAGCGCGATGCC ATGTTTGGTGATTGA Daro_1688 1817494 - 1816691 - | precorrin-2 C20-methyltransferase / cobalt-factor II C20-methyltransferase TERM 1704 1816729 - 1816768 + g 77 -11.4 -3.69354 | gap 1, overlap 1816730 1816742 1816743 ACTCGATGGCTTCCT TGCGTTTGCGGC-AGCCGC GAC GCAGTTCGCCGCGGACGCG TTTCGGGTTCTGGAC Daro_1689 1818777 - 1817491 - | precorrin-6Y C5,15-methyltransferase (decarboxylating) TERM 1705 1817850 - 1817866 + g 75 -2.1 -4.87665 | overlap 1817851 CATTGGCCCTGGCAT TGGCGGC ATC GCCTTCG TTTTTCTCGATCGCC TERM 1706 1818528 - 1818548 + g 86 -14 -3.53811 | GGCAGAGCGGGTCGC CGGTGGCC AGCGC GGCCACCG TTTGGCCGGCGTCGC TERM 1707 1818687 - 1818710 + g 74 -11 -3.53012 | gap 1, opp_overlap 1818683 1818651 CGATCACGATATCGG CTG-CCGCCAG ACG CTGGCGGGCGG TTTCGGACAAACCCG cbiD 1819945 - 1818764 - | cobalt-precorrin-6A synthase Daro_1691 1820630 - 1819953 - | precorrin-8X methylmutase Daro_1692 1821548 - 1820637 - | cobalamin (vitamin B12) biosynthesis CbiX protein Daro_1693 1822354 - 1821545 - | precorrin-4 C11-methyltransferase Daro_1694 1823261 - 1822386 - | cobalt transport protein ATP-binding subunit Daro_1695 1823998 - 1823258 - | cobalt transport protein TERM 1708 1823769 - 1823757 - G 81 -4.7 -4.99638 | ACATCGACAGAAAAA GCCAG CGA CAGGC AGCCGAGTGCCAGAA TERM 1709 1823947 - 1823935 - G 70 -4.7 -4.57073 | overlap 1823936 1823937 CACTGGCCGCAAAAA GCCCC TTG GCGGC CGGCGAAACCGGGCG Daro_1696 1824338 - 1823988 - | cobalt transport protein CbiN Daro_1697 1825012 - 1824335 - | cobalt transport protein CbiM TERM 1710 1824538 - 1824504 - G 71 -5.6 -4.41206 | gap 1, overlap 1824473 1824507 AATGACGTGACAAAA CCACCGGCC-GGGTC AGGGAA GGCCCAGGCCAGTTG CAGCGAGGTCGTCAC TERM 1711 1824647 - 1824637 - G 78 -6.8 -4.62069 | overlap 1824638 GCGCCAGGTGAAAAA TGCC GGC GGCA GCAAACGGACCAACG Daro_1698 1826386 - 1825424 - | prolyl aminopeptidase TERM 1712 1825778 - 1825794 + g 71 -9.3 -3.78775 | GGGGGGCGGTGCCAG GCCAGGC TGC GCCAGGC TTTGCTCATAGCGGG TERM 1713 1826527 - 1826549 + H 70 -9.8 -3.19157 | GGTACGATGGGTTCA GGTCCGGTGC CGT GCATCGAACC TTACTCAACTTAATG TERM 1714 1826661 - 1826686 + H 86 -12.5 -3.53224 | overlap 1826662 CTAAGGGGGCCGAGA CGGCCGGAGGC AGCT GCCTTCGGCCA TTTCCGCAGAGCATG TERM 1715 1826662 - 1826685 + H 100 -16 -2.71791 | overlap 1826661 TAAGGGGGCCGAGAC GGCCGGAGGC AGCT GCCTTCGGCC ATTTCCGCAGAGCAT Daro_1699 1826719 - 1827636 + | pyrroloquinoline quinone biosynthesis protein PqqB Daro_1700 1827642 - 1828337 + | pyrroloquinoline quinone biosynthesis protein PqqC TERM 1716 1828480 - 1828458 - g 79 -14.8 -2.92246 | TCAAGCTGAACCAGA GCGCCGGTGA GAT TCTCCGGCGC TGCGACGGCCAGTGC Daro_1701 1828334 - 1828633 + | coenzyme PQQ synthesis D Daro_1702 1828630 - 1829757 + | pyrroloquinoline quinone biosynthesis protein PqqE Daro_1703 1830950 - 1829943 - | hypothetical protein TERM 1717 1830050 - 1830014 - G 90 -5.1 -5.37865 | TCAACAACGAAAAAA CACCTAGTAACATCCCA AAC CAGAGTGTCACCAGGCG AATTGAAATTGCCAA TERM 1718 1830514 - 1830487 - G 76 -7 -4.44548 | gap 1 CATACCCAAGCAAAA TGCTGACCAGCGA TCA TGGC-GGCCAGCA TACCCAGCAAAATCA Daro_1704 1831336 - 1830947 - | GtrA-like protein Daro_1705 1832643 - 1831333 - | hypothetical protein TERM 1719 1831791 - 1831810 + g 72 -2 -4.74801 | opp_overlap 1831794, overlap 1831793 1831794 TCTTGAGCTTGGCAA TCACGCAG ACGA CTGCGATA TTTTTGATCGCCTTG TERM 1720 1832191 - 1832175 - G 73 -4.3 -4.66163 | overlap 1832177 ACTTGTAGTCAAAAA GCCGCTG CCA CAGCACC TCCCAAGCCTCGGCA Daro_1706 1833574 - 1832645 - | NAD-dependent epimerase/dehydratase:3-beta hydroxysteroid dehydrogenase/isomerase:dTDP-4-dehydrorhamnose reductase TERM 1721 1832867 - 1832851 - G 83 -2.2 -5.26918 | overlap 1832840 ACAGCGCATAAAAAA GCGAAT ACGGA ATGCGC AAAATCAGTGTATTG Daro_1707 1835670 - 1833571 - | hypothetical protein TERM 1722 1834329 - 1834339 + g 84 -4 -5.18995 | TTTGTTTTCCAATGG CATT TTT AATG TTTTTGTATTCTGTT TERM 1723 1834763 - 1834753 - G 88 -3.2 -5.5208 | GTATAATATAAAAAA CAGC AAA GCTA ATTCTAACGTGTCCC Daro_1708 1836425 - 1835673 - | Short-chain dehydrogenase/reductase SDR Daro_1709 1837724 - 1836426 - | FAD linked oxidase, N-terminal Daro_1710 1839223 - 1837712 - | hypothetical protein TERM 1724 1838924 - 1838944 + gr 78 -9.1 -3.88097 | ACCCTCGTTACGCTG TTGCTTGAG CCA TTCAAGCAA TTCTTCGTTGTATGG TERM 1725 1839166 - 1839186 + gr 85 -14 -2.73364 | TTCTCTGCGGGTTAA GCCGCTGC GGCGA GCAGCGGC TGGTTGAAGTAAGCC Daro_1711 1839989 - 1839162 - | integrase catalytic subunit TERM 1726 1839895 - 1839879 - GR 74 -10.9 -3.18582 | GATTCGACGCATCAA CCGAAGA TCG TCTTCGG GGATGGGCTGCGGCT Daro_1712 1840288 - 1839986 - | transposase IS3/IS911 Daro_1713 1840909 - 1840661 - | hypothetical protein Daro_1714 1841419 - 1840955 - | hypothetical protein TERM 1727 1842068 - 1842083 + r 100 -11.8 -5.11033 | opp_overlap 1842068 CCGGGCAATAAAAAA CCCCGC ACTG GCGGGG TTTTTTGGACTTGTC TERM 1728 1842083 - 1842068 - R 100 -11.8 -5.4505 | opp_overlap 1842068 CCGGGCAATAAAAAA CCCCGC ACTG GCGGGG TTTTTTGGACTTGTC Daro_1715 1842512 - 1842240 - | histone-like DNA-binding protein Daro_1716 1845089 - 1842675 - | Lon-A peptidase TERM 1729 1842839 - 1842867 + g 82 -12.5 -3.66288 | overlap 1842840 TCTTGTTTTTGATGT TGTCAGGGATCTC GGT GAGGTCCTTGACG TTCTCTTCCGGGATC TERM 1730 1842840 - 1842866 + g 73 -13.8 -2.79452 | overlap 1842839 CTTGTTTTTGATGTT GTCAGGGATCTC GGT GAGGTCCTTGAC GTTCTCTTCCGGGAT TERM 1731 1842891 - 1842920 + g 85 -7 -4.8622 | opp_overlap 1842890 CGGGATCAAGGCAAT CTTCAGTCCGCC ACGCAC GGCGGCCAGGAG TTTTTCCTTCAGACC TERM 1732 1843283 - 1843308 + g 78 -6.7 -4.67038 | CGACTTCGGTCCAGG CCAGACCGGTC ACCT GGCCGACCTGG TTTTCCTTTTCCGCC TERM 1733 1844268 - 1844309 + g 71 -8.5 -4.02742 | opp_overlap 1844249 CAGCTTCTTCAACTC GCCCTCGGCCTTGGCCAGG CCTT CCTTGCTCATGCCGGCGGC TTTGATCTTCTTGTC clpX 1846419 - 1845157 - | ATP-dependent protease ATP-binding subunit Daro_1718 1847063 - 1846434 - | ATP-dependent Clp protease proteolytic subunit ClpP tig 1848435 - 1847131 - | trigger factor TERM 1734 1848155 - 1848185 + g 80 -3.1 -5.10933 | gap 1, overlap 1848156 CTTTCGGTGGTCTTC GGCTCGATGCGCGG GTAG CCG-GCAACGCGCA TTTTCTTTTCGGTGA TERM 1735 1848688 - 1848715 + H 100 -17 -4.35926 | opp_overlap 1848688 GCCCCAGAATATAAA CCCCCGCACACC GCAA GGTCTGCGGGGG TTTTCACTTTGGAGT TERM 1736 1848715 - 1848688 - H 100 -17 -4.27117 | opp_overlap 1848688 GCCCCAGAATATAAA CCCCCGCACACC GCAA GGTCTGCGGGGG TTTTCACTTTGGAGT Daro_1720 1848740 - 1850194 + | peptidase M20C, Xaa-His dipeptidase Daro_1721 1850199 - 1850414 + | hypothetical protein Daro_1722 1851287 - 1850418 - | spermidine synthase-like protein TERM 1737 1850787 - 1850813 + g 91 -8 -4.80396 | opp_overlap 1850791, overlap 1850767 1850792 1850795 GCCGGTCTTGTCGAA GGCATCGACG AGCAGGG CATCGATGCC TTTTTCGGTGTTTTC Daro_1723 1852196 - 1851297 - | N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase Daro_1724 1853326 - 1852193 - | succinyl-diaminopimelate desuccinylase TERM 1738 1852901 - 1852921 + g 71 -8.9 -3.72027 | overlap 1852891 CTCAACGACAGCGAT GGTGCCGTC ATT GGCGTCACC TTCTTCATCGGAGGT Daro_1725 1854513 - 1853326 - | pilus retraction protein PilT TERM 1739 1853390 - 1853423 + g 74 -3.7 -4.81814 | overlap 1853391 AAGGAAGTGCCGCCA TCGCTGGTGCTGTCG AACT CGAGAGCGACATCGG TTTTCTTGTCGTCCT dapD 1855357 - 1854539 - | 2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase Daro_1727 1856563 - 1855373 - | hypothetical protein TERM 1740 1855819 - 1855803 - G 71 -5.8 -4.36914 | gap 1 TCGCCGGCGACAAAA CCGGAGC GCAT GC-CCGG CACATTGGAGCGCTT Daro_1728 1856622 - 1857005 + | hypothetical protein Daro_1729 1858100 - 1857021 - | metal-dependent phosphohydrolase TERM 1741 1857243 - 1857227 - G 75 -7.9 -4.1899 | opp_overlap 1857226 1857227 1857229 TGATGGCATCGAAAA CGTCGGC AAC GCCGATG ATTCTGGCCTCAAGG Daro_1730 1858696 - 1858379 - | hypothetical protein Daro_1731 1859187 - 1858714 - | cytidine/deoxycytidylate deaminase, zinc-binding region Daro_1732 1859288 - 1862791 + | chromosome segregation protein SMC Daro_1733 1862815 - 1864080 + | ZipA-like protein TERM 1742 1865001 - 1865011 + G 71 -8.2 -4.13767 | CTGGGTTTCGTCTCG CGCG CCC CGCG TTTTGCCATCGCCCA TERM 1743 1865385 - 1865363 - g 86 -13.4 -3.53012 | opp_overlap 1865346 CTCGGCGGTGGTAAA GGGCGACGAC GAA GCCATCGCCC GTTGCACCGGTGGCC Daro_1734 1864080 - 1866131 + | NAD-dependent DNA ligase Daro_1735 1866131 - 1867000 + | UDP-glucose pyrophosphorylase TERM 1744 1867038 - 1867016 - g 76 -5.4 -4.60041 | ATGGATCTGCAAAAA GCCCAGGCCA TGC TGGCCAATGC CGAACTGATTCACGA Daro_1736 1867001 - 1867549 + | hypoxanthine-guanine phosphoribosyltransferase Daro_1737 1867546 - 1868247 + | hypothetical protein Daro_1738 1868249 - 1869019 + | 5'-methylthioadenosine phosphorylase TERM 1745 1869064 - 1869024 - T 72 -12 -2.52464 | gap 1, overlap 1869039 TGTCGGTTTAAGTCA TGCTTCCGGTAAGCAGCAA GGTC TTGC-GCTTACCGGAAGGT TCCAAGATCGTTTCT Daro_1739 1871636 - 1869078 - | PII uridylyl-transferase Daro_1740 1872436 - 1871636 - | methionine aminopeptidase TERM 1746 1873194 - 1873212 + G 72 -13.8 -2.57092 | overlap 1873189 1873185 AGCCGCTTGTATCAC CTGGCCGC ATC GCGGCCGG TCAGTTGGTGCGATT Daro_1741 1872501 - 1873463 + | dTDP-4-dehydrorhamnose reductase rpsB 1873667 - 1874413 + | 30S ribosomal protein S2 TERM 1747 1874422 - 1874445 + F 70 -6.7 -4.09685 | gap 1, overlap 1874423 ACAGTAAAGTTGTAA C-GGCGGAGC GCCAA GCTCCGTCTG TTTTAAAAGCTCAGG TERM 1748 1874423 - 1874443 + F 77 -10.4 -3.64716 | overlap 1874422 CAGTAAAGTTGTAAC GGCGGAGC GCCAA GCTCCGTC TGTTTTAAAAGCTCA tsf 1874471 - 1875370 + | elongation factor Ts pyrH 1875386 - 1876102 + | uridylate kinase TERM 1749 1876150 - 1876138 - g 76 -5.5 -4.72029 | overlap 1876139 CTGAACTCAAGAAAA CTGCC GAA GGCAA GATGCAGAAATCGCT Daro_1745 1876077 - 1876673 + | ribosome recycling factor Daro_1746 1876701 - 1877462 + | undecaprenyl pyrophosphate synthetase TERM 1750 1877499 - 1877511 + G 70 -4.8 -4.46587 | CGTCCTGATGGCCTT GCTG TTGCC CAGC TTGTTTTATTCGTCG Daro_1747 1877455 - 1878285 + | phosphatidate cytidylyltransferase Daro_1748 1878282 - 1879478 + | 1-deoxy-D-xylulose 5-phosphate reductoisomerase TERM 1751 1880096 - 1880125 + G 74 -5.6 -4.46212 | overlap 1880098 GAGCAGGGCTGGGAG GGGGATGCCCTG GAAAAG CTGGGTATCCGC TTTTATCGTCCAAAC Daro_1749 1879475 - 1880842 + | peptidase M50, putative membrane-associated zinc metallopeptidase TERM 1752 1881650 - 1881672 + G 72 -2.6 -4.74103 | GATCGTTATCAGGTA TCGTCAGTCA AGA TGGCCGGTGA TTTTTCGATTGCCGA Daro_1750 1880846 - 1883131 + | surface antigen (D15):surface antigen variable number Daro_1751 1883180 - 1883650 + | Outer membrane chaperone Skp (OmpH) TERM 1753 1883688 - 1883713 + G 95 -20.5 -2.73542 | overlap 1883690 GCTGACGCTTGCTGA CATCGCCGCCC AATT GGGCGGCGATG TGCTTGGAGATTCGC TERM 1754 1883690 - 1883711 + G 85 -17.3 -2.91199 | overlap 1883688 TGACGCTTGCTGACA TCGCCGCCC AATT GGGCGGCGA TGTGCTTGGAGATTC Daro_1752 1883650 - 1884693 + | UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase Daro_1753 1884698 - 1885132 + | 3-hydroxyacyl-[acyl-carrier-protein] dehydratase Daro_1754 1885134 - 1885904 + | UDP-N-acetylglucosamine acyltransferase TERM 1755 1886678 - 1886711 + G 77 -10.9 -3.56844 | overlap 1886676 CGTTCCGCCTGCTGT TCGGCCATGCCCAGG ATGC CCTTGGCGCGGCTGA TGTTTCGTTGGTGGC Daro_1755 1885906 - 1887054 + | lipid-A-disaccharide synthase Daro_1756 1887042 - 1887632 + | ribonuclease HII/HIII Daro_1757 1887629 - 1888396 + | tRNA/rRNA methyltransferase (SpoU) Daro_1758 1889256 - 1888438 - | hypothetical protein Daro_1759 1892022 - 1889266 - | phosphoenolpyruvate carboxylase TERM 1756 1892126 - 1892106 - R 100 -12.5 -5.09426 | opp_overlap 1892106 1892097 1892109, overlap 1892109 GGCAAGCGGAAAAAA CATCGGGGC TGG GCCCCGCTG TTGGTAATGGTTTTT TERM 1757 1892106 - 1892126 + r 83 -12.5 -3.28146 | opp_overlap 1892106 1892109, overlap 1892097 1892109 GGCAAGCGGAAAAAA CATCGGGGC TGG GCCCCGCTG TTGGTAATGGTTTTT TERM 1758 1892109 - 1892123 + r 76 -12.8 -2.5076 | opp_overlap 1892106 1892109, overlap 1892106 1892097 AAGCGGAAAAAACAT CGGGGC TGG GCCCCG CTGTTGGTAATGGTT TERM 1759 1892123 - 1892109 - R 79 -12.8 -3.09328 | opp_overlap 1892109 1892106 1892097, overlap 1892106 AAGCGGAAAAAACAT CGGGGC TGG GCCCCG CTGTTGGTAATGGTT Daro_1760 1892628 - 1892182 - | hypothetical protein TERM 1760 1892709 - 1892745 + r 72 -10.2 -3.39895 | overlap 1892712 1892713 TTCCGCCATTTGGGG TATTCCCGGAGCGC-CCG GGG TGGCGCGCTCCGGGG-TG TTGCTTAGTGCGACC TERM 1761 1892712 - 1892743 + r 100 -16.6 -3.27029 | gap 1, overlap 1892709 1892713 CGCCATTTGGGGTAT TCCCGGAGCGC-CCG GGG TGGCGCGCTCCGGGG TGTTGCTTAGTGCGA TERM 1762 1892713 - 1892742 + r 100 -17.9 -2.55896 | gap 1, overlap 1892712 1892709 GCCATTTGGGGTATT CCCGGAGCGC-CCG GGG TGGCGCGCTCCGGG GTGTTGCTTAGTGCG Daro_1761 1893202 - 1892750 - | hypothetical protein Daro_1762 1894953 - 1893217 - | L-lactate permease TERM 1763 1894042 - 1894057 + g 71 -5.4 -4.37886 | gap 1, overlap 1894038 CCAGGCGCGACGGAC GGC-GAC CTT GTCAGCC TTTTGTGGGAGGTCG TERM 1764 1894804 - 1894794 - G 74 -6.8 -4.4267 | TGCCAAAACCGAAAA TGGC AAT GCCA AGGGCTGAGATCAAG TERM 1765 1894974 - 1895020 + r 93 -10.9 -4.35518 | gap 1 AATTCCTTTATCATC TGGTCAGACCACTTG-CTGCGT TGGC GCGCAGACGGGTGGCGTGACCA TTTTAGTGTCAGATT TERM 1766 1895048 - 1895080 + r 70 -6.2 -4.16307 | overlap 1895050 ATTTGTCTCAGTTTT TGGCCCGGTGCAAG AACCC CTTCTGCCGGGCTG TCTTTTTCTTAACAG Daro_1763 1897860 - 1895089 - | 4Fe-4S ferredoxin, iron-sulfur binding:FAD linked oxidase, C-terminal:FAD linked oxidase, N-terminal TERM 1767 1897436 - 1897454 + g 89 -12.4 -4.07568 | overlap 1897436 ATGCCGGAAGCGTTG TTGGCGGC GAT GCCGCCGA TTTTGGCAGCGCCGA Daro_1764 1899299 - 1897857 - | Iron-sulfur cluster binding protein Daro_1765 1899964 - 1899296 - | hypothetical protein TERM 1768 1899345 - 1899378 + g 70 -4.3 -4.56597 | overlap 1899346 TCCTTCGGACCATGG GCGCCGTAGGCCAGC GTTT GCTGGATGTCGGCGG TTTTTGAAGGGCCGG Daro_1766 1900743 - 1899961 - | hypothetical protein TERM 1769 1900721 - 1900704 - G 83 -2.5 -5.20328 | TCGCAAAAAAATAAA CGTCGCG ATGG CGTGGCG GCGGGGTTTGCGCTT Daro_1767 1900919 - 1901686 + | GntR family transcriptional regulator TERM 1770 1902775 - 1902765 - g 74 -4 -4.81083 | GGCAAGCAGGAAAAA TTCA AGC TGAA GTCCTTCTCCAAGGT TERM 1771 1903535 - 1903523 - g 77 -3.3 -4.89477 | opp_overlap 1903523, overlap 1903524 GCCGGAAGAAGAAAA CCCGA TGC TCGGC TTCCGTGGCGCCTCG Daro_1768 1901724 - 1904099 + | phosphoenolpyruvate synthase TERM 1772 1904124 - 1904158 + T 100 -16.7 -2.88579 | gap 1, opp_overlap 1904132, overlap 1904132 CTGATTGAAAACTTG CA-AAAAAAGGCCGGG GAGA CCCGGCCTTTTTTATG TGTGTGGCCACTTGA TERM 1773 1904132 - 1904149 + T 100 -14.1 -5.4492 | opp_overlap 1904132, overlap 1904124 AAACTTGCAAAAAAA GGCCGGG GAGA CCCGGCC TTTTTTATGTGTGTG TERM 1774 1904149 - 1904132 - T 100 -14.1 -5.4477 | opp_overlap 1904132 1904124 AAACTTGCAAAAAAA GGCCGGG GAGA CCCGGCC TTTTTTATGTGTGTG TERM 1775 1904290 - 1904253 - T 76 -4.1 -5.0133 | gap 1, opp_overlap 1904255 1904256, overlap 1904240 1904254 1904256 GACGTTGTCAAAAAA CGACAGTGGCTCG-TCCA AAA TGAAACGAGCCACTGATT TTTCATGTTTGCGTT TERM 1776 1904255 - 1904288 + T 93 -8.9 -4.93696 | gap 1, opp_overlap 1904254 1904253 1904256, overlap 1904256 CGTTGTCAAAAAACG ACAGTGGCTCG-TCCA AAA TGAAACGAGCCACTGA TTTTTCATGTTTGCG TERM 1777 1904256 - 1904287 + T 86 -12.4 -3.55133 | gap 1, opp_overlap 1904254 1904253 1904256, overlap 1904255 GTTGTCAAAAAACGA CAGTGGCTCG-TCCA AAA TGAAACGAGCCACTG ATTTTTCATGTTTGC TERM 1778 1904287 - 1904256 - T 100 -14.6 -3.37655 | gap 1, opp_overlap 1904256 1904255, overlap 1904254 1904253 GTTGTCAAAAAACGA CAGTGGCTCG-TCCA AAA TGAAACGAGCCACTG ATTTTTCATGTTTGC Daro_1769 1904798 - 1904352 - | hypothetical protein TERM 1779 1904844 - 1904821 - H 76 -12.4 -2.50816 | overlap 1904820 1904823 CCTTTATTGATCAAT CACCGTGGCC GGGT GGCAACGGTG CGCTCAGTCTTACGC Daro_1770 1905120 - 1906079 + | lipolytic protein TERM 1780 1906133 - 1906146 + T 100 -9.5 -5.4505 | opp_overlap 1906133 CCATCAATGAAGAAA GCCGG GTAA CCGGC TTTTTTATTGCAAGC TERM 1781 1906146 - 1906133 - T 86 -9.5 -4.34737 | opp_overlap 1906133 CCATCAATGAAGAAA GCCGG GTAA CCGGC TTTTTTATTGCAAGC Daro_1771 1907541 - 1906192 - | PAS:GGDEF Daro_1772 1911066 - 1907557 - | PAS/PAC sensor hybrid histidine kinase TERM 1782 1909316 - 1909304 - G 70 -3.3 -4.70659 | TTGTACACTGAAAAA CCTTC CCC GATGG CCTCGATGGCCGAAT TERM 1783 1910542 - 1910554 + g 81 -4.8 -5.00616 | GCGAGCCTTCTGCTC TGCC TTCGT GGCA TTTTTTACCAGCAAA TERM 1784 1910657 - 1910678 + g 73 -10.2 -3.61398 | opp_overlap 1910656 1910657 AAGGCGTTGGGAAAG CGGTAGCA GGTGAG TGCTACCG TTATTGCAAAAACGA TERM 1785 1911520 - 1911553 + G 80 -10.3 -4.08692 | gap 1, overlap 1911523 1911531 GCTCGACCTGTGCGG CTT-TCCGGCGCGATC GCC GAATGCGCCGGATGAG TTTTCGGCGGCCTTG TERM 1786 1911523 - 1911549 + G 77 -14.4 -2.74605 | overlap 1911520 1911531 CGACCTGTGCGGCTT TCCGGCGCGATC GCC GAATGCGCCGGA TGAGTTTTCGGCGGC Daro_1773 1911311 - 1911994 + | hypothetical protein TERM 1787 1912855 - 1912882 + G 84 -12 -4.07568 | gap 1, opp_overlap 1912851 CTGGCCGATAACGTT CAGGCGC-TGCTC GAC GAGCACGCGCCGG TTTTCGACAACCGCA Daro_1774 1912135 - 1913463 + | malonyl-CoA decarboxylase TERM 1788 1913516 - 1913500 - T 100 -9.4 -5.60993 | opp_overlap 1913499 1913500 CTCTGCACAAAAAAA GGTCGG ACTAG CCGACC CTTTGTCTGAGCAAT Daro_1775 1914455 - 1913538 - | hypothetical protein sdhB 1915480 - 1914722 - | fumarate reductase iron-sulfur subunit TERM 1789 1915428 - 1915454 + g 74 -5.8 -4.56597 | CGGAGAATTTCCAGG GTCAGGCGGC GTGGCTG GTCGTCTGGC TTTTTGCGGCGGAGC Daro_1777 1917456 - 1915477 - | fumarate reductase flavoprotein subunit TERM 1790 1916195 - 1916177 - G 88 -6.7 -4.88736 | GAGGAGGTACAAAAA TCGGCAA TCGCG TCGCCGA CGATCATCCCTGAAA Daro_1778 1918276 - 1917458 - | fumarate reductase cytochrome b-556 subunit TERM 1791 1917847 - 1917887 + g 74 -4 -4.82901 | gap 1, opp_overlap 1917862 1917884, overlap 1917860 1917862 CAAACCCGGTCCATG CTTGTATCCACCACAGCGA GGTA TCGCTGTG-TTGAAACCGG TTTTTGTGCCGGCGG Daro_1779 1918614 - 1920539 + | helicase c2:DEAD/DEAH box helicase, N-terminal TERM 1792 1920932 - 1920953 + G 71 -7.3 -4.23892 | gap 1 CGTTGAGTGGACGCA CGGGC-AGCT TGG AGCTTGCTCG TTTTGGCTCATTCAA Daro_1780 1920559 - 1921074 + | hypothetical protein Daro_1781 1921088 - 1922221 + | hypothetical protein Daro_1782 1922239 - 1922745 + | molybdopterin-guanine dinucleotide biosynthesis MobB region TERM 1793 1922781 - 1922769 - g 73 -4.8 -4.58283 | overlap 1922771 CAAGCCCTGGAAAAA CTGC TGGCT GCAG CCCAGCCGGTCGAGG TERM 1794 1923144 - 1923125 - g 75 -8.6 -4.19238 | gap 1, overlap 1923127 GCGTGAAGGTGAAAA CATTCGCCG GGC CGGCGAA-G ACATCTCTGTTGGCG TERM 1795 1923143 - 1923127 - g 82 -12.3 -3.69618 | overlap 1923125 GTGAAGGTGAAAACA TTCGCCG GGC CGGCGAA GACATCTCTGTTGGC Daro_1783 1922739 - 1923947 + | molybdopterin molybdochelatase Daro_1784 1923944 - 1924192 + | molybdopterin synthase subunit MoaD TERM 1796 1924275 - 1924257 - g 77 -11.6 -3.62046 | CCAGGCCCGCAAGAA GGCCGGCG AGA CGCTGGCC GTGGCCGATGTCGTC TERM 1797 1924648 - 1924629 - g 100 -15 -5.06816 | ACTGGTCAAGAAAAA GGTCGCCG CCGT CGGCGACC AGCCGGCCGTCACCA Daro_1785 1924210 - 1925133 + | GTP-binding TERM 1798 1925191 - 1925207 + F 78 -8.7 -4.24711 | opp_overlap 1925160 1925159 1925191 TTCCGAAAGGAACAA TAGGGGG CAG TCCCCTA TTTCTTACCCTTTTG TERM 1799 1925207 - 1925191 - f 72 -8 -3.89354 | opp_overlap 1925191, overlap 1925160 1925159 TTCCGAAAGGAACAA TAGGGG GCAGT CCCCTA TTTCTTACCCTTTTG TERM 1800 1925459 - 1925477 + F 88 -11 -4.06491 | TCGCGAATGTCTGTT GTTGTCGC TTG GCGACAGC TTTGTATCAAATTGC TERM 1801 1925877 - 1925845 - g 71 -7.6 -4.10552 | overlap 1925846 CTCCAGCAAATGAAA GTCCGGCACGCCGA GTTTG TCTGCGTGCGGGAA GAAGATACCCGTAGC Daro_1786 1925695 - 1926021 + | hypothetical protein Daro_1787 1926021 - 1926860 + | HDIG TERM 1802 1927458 - 1927443 - g 77 -3.3 -4.87803 | overlap 1927444 TAGGCTCAAACAAAA GGAAA GCTTTT TTTCC GCAGCTTTCGAAGTC Daro_1788 1927063 - 1928340 + | hypothetical protein Daro_1789 1928826 - 1928611 - | hypothetical protein Daro_1790 1929275 - 1928820 - | rhodanese-like protein Daro_1791 1929833 - 1929303 - | hypothetical protein TERM 1803 1930324 - 1930311 - g 74 -3.7 -4.82901 | overlap 1930312 GTCCGGCCAGAAAAA CCTGC GCGT GCTGG CGCTGAGTGTCGAGG Daro_1792 1929925 - 1930479 + | YaeQ Daro_1793 1930529 - 1930999 + | OmpA/MotB TERM 1804 1931019 - 1931038 + T 100 -10.7 -5.67283 | opp_overlap 1931019 GAATGATCAGTAAAA GGCGAGC CTGGCA GCTCGCC TTTTTTATTTCAGTT TERM 1805 1931038 - 1931019 - T 95 -11.4 -4.33105 | opp_overlap 1931019 GAATGATCAGTAAAA GGCGAGCC TGGC AGCTCGCC TTTTTTATTTCAGTT Daro_1794 1931500 - 1931066 - | CBS Daro_1795 1932358 - 1931639 - | hypothetical protein Daro_1796 1934255 - 1932366 - | peptidase U32 Daro_1797 1935083 - 1934262 - | hypothetical protein Daro_1798 1935196 - 1935474 + | hypothetical protein TERM 1806 1935521 - 1935553 + T 100 -16.3 -2.71712 | opp_overlap 1935527 1935540, overlap 1935527 CGGCGGGGCACGAAA GAAGAACGGGCGCCG AAA TGGCGCCCGTTTTGC ATTTGGGGCACCGCA TERM 1807 1935527 - 1935547 + T 100 -16.1 -4.35524 | opp_overlap 1935527 1935540, overlap 1935521 GGCACGAAAGAAGAA CGGGCGCCG AAA TGGCGCCCG TTTTGCATTTGGGGC TERM 1808 1935547 - 1935527 - T 100 -15.4 -4.12603 | opp_overlap 1935521 1935527, overlap 1935540 GGCACGAAAGAAGAA CGGGCGCC GAAAT GGCGCCCG TTTTGCATTTGGGGC Daro_1799 1937260 - 1935596 - | putative ABC transporter ATP-binding protein TERM 1809 1937326 - 1937357 + r 100 -19.6 -3.91028 | gap 1, opp_overlap 1937326 GGGCTTCAATGCAAA TGACCAGCCTCCCGA ATG TCGGG-GGCTGGTCA TTGTTGGTTTGAGTT TERM 1810 1937357 - 1937326 - R 100 -19.6 -3.75153 | gap 1, opp_overlap 1937326 GGGCTTCAATGCAAA TGACCAGCCTCCCGA ATG TCGGG-GGCTGGTCA TTGTTGGTTTGAGTT Daro_1800 1938024 - 1937383 - | hypothetical protein Daro_1801 1938605 - 1938048 - | hypothetical protein TERM 1811 1938439 - 1938461 + g 70 -4.8 -4.56597 | overlap 1938440 GCGCCCATCACGTTT TCGGAGGT GTTGGTG GCCTCCGG TTTTTCAGGGGGCGC TERM 1812 1940320 - 1940333 + G 75 -2.3 -4.9725 | TATCTTGTCCCGCAA TCGGC GGGC GCCCA TTTTTGTGTGGAAAT Daro_1802 1938916 - 1940364 + | sensor histidine kinase TERM 1813 1940487 - 1940452 - g 78 -7.4 -4.65895 | gap 1, overlap 1940472 GCCGCTAGCCAAAAA GCCGATCCGTGTCGACG AAA CGACGCC-CGAAGCGGC CCTCAGTTACAACCA Daro_1803 1940354 - 1940896 + | hypothetical protein TERM 1814 1942266 - 1942246 - g 76 -7.5 -4.56597 | opp_overlap 1942248 CGCCTGCTGCAAAAA CATGACCTG ACT CCGGCCATG TTCCGCAGCGATAGC Daro_1804 1940893 - 1942302 + | two component, sigma54 specific, Fis family transcriptional regulator TERM 1815 1942486 - 1942476 - f 74 -2.4 -5.1675 | GTATTCATCAAAAAA GGGG ATT CGCC ATGCTTATTCGTAAC Daro_1805 1942487 - 1942828 + | transport-associated protein TERM 1816 1943085 - 1943054 - f 72 -5.8 -4.31835 | overlap 1943058 AAGTTCGAGAATAAA CACATTGCCGCTCG CACA CGAACCGCAACTTG ACCAGCACTCCGGGT TERM 1817 1943430 - 1943415 - f 90 -10.4 -4.37991 | opp_overlap 1943415 TAAAAACATGCAAAA GCCACC TCGC GGTGGC TTTTTTGTTTTCTGC TERM 1818 1943415 - 1943430 + F 100 -10.4 -5.86976 | opp_overlap 1943415 TAAAAACATGCAAAA GCCACC TCGC GGTGGC TTTTTTGTTTTCTGC TERM 1819 1943465 - 1943489 + F 100 -9.9 -5.14949 | opp_overlap 1943454, overlap 1943454 AAATTTGGCTTTTTC CCGCCAATCTG TTT CTGATGGGCGG TTTTCTTGTTTTGTT Daro_1807 1943580 - 1943939 + | hypothetical protein TERM 1820 1944030 - 1944062 + T 100 -21.5 -3.96892 | opp_overlap 1944032 1944038, overlap 1944032 1944038 GCTTGATAGGTGTAA TAGGAAAAGCCACCG GAT CGGTGGCTTTTCCTG TTTCTGATGCCGGTT TERM 1821 1944032 - 1944060 + T 100 -21.9 -3.57406 | opp_overlap 1944032 1944038, overlap 1944030 1944038 TTGATAGGTGTAATA GGAAAAGCCACCG GAT CGGTGGCTTTTCC TGTTTCTGATGCCGG TERM 1822 1944060 - 1944032 - T 100 -21.9 -3.05343 | opp_overlap 1944032 1944030 1944038, overlap 1944038 TTGATAGGTGTAATA GGAAAAGCCACCG GAT CGGTGGCTTTTCC TGTTTCTGATGCCGG TERM 1823 1944038 - 1944054 + T 100 -13.7 -4.53036 | opp_overlap 1944032 1944038, overlap 1944032 1944030 GGTGTAATAGGAAAA GCCACCG GAT CGGTGGC TTTTCCTGTTTCTGA TERM 1824 1944054 - 1944038 - T 100 -13.7 -4.4261 | opp_overlap 1944038 1944032 1944030, overlap 1944032 GGTGTAATAGGAAAA GCCACCG GAT CGGTGGC TTTTCCTGTTTCTGA Daro_1808 1944478 - 1944080 - | hypothetical protein Daro_1809 1944908 - 1944465 - | glycine cleavage H-protein Daro_1810 1946908 - 1945025 - | selenocysteine-specific translation elongation factor SelB TERM 1825 1946791 - 1946813 + g 74 -3.2 -4.78572 | TGTAGGCGTAGCCGA GGTCGACGGT GAT GCCGCGGGCC TTTTCTTCCTTCAGG Daro_1811 1947381 - 1946905 - | MOSC Daro_1812 1947939 - 1947382 - | NAD(P)H dehydrogenase (quinone):NADPH-dependent FMN reductase TERM 1826 1947837 - 1947875 + g 71 -8.7 -3.76373 | gap 1, overlap 1947838 1947865 CCCAGGTTTGCTCAG TGCTGG-CCGGCAGGCCG ACGG CGGCGCGCCGGGCCAGGG TTTCGGTATTGCCGA TERM 1827 1947970 - 1948008 + r 82 -11.7 -3.53563 | gap 1, overlap 1947971 GTCAAAAGCCGTATT TTGGCA-CGTCCCCGCCT TGCC GGGCGGGGACGCTGGCGG TTTAGCCGAACATGT TERM 1828 1947971 - 1948007 + r 81 -13 -2.71924 | gap 1, overlap 1947970 TCAAAAGCCGTATTT TGGCA-CGTCCCCGCCT TGCC GGGCGGGGACGCTGGCG GTTTAGCCGAACATG Daro_1813 1949344 - 1948010 - | sulfide dehydrogenase (flavocytochrome), flavoprotein subunit TERM 1829 1949446 - 1949426 - R 74 -3.1 -4.9448 | opp_overlap 1949439, overlap 1949428 1949431 AGGCACGAAAGAAAA CAGCAGGCG GTA CGCAGACTG CCCAGCGAGGCTGCT Daro_1814 1950860 - 1949463 - | selenocysteine synthase TERM 1830 1949889 - 1949919 + g 93 -6.7 -5.19251 | CGCGGCCAGTGTCGT CTTGCCGACGCGC AGGGC GCGCTTCAGCGGG TTTTTCTTGATCTTG TERM 1831 1950824 - 1950848 + g 75 -2.7 -4.90266 | opp_overlap 1950824, overlap 1950822 1950829 CTAGCTGGGCCAGAA CGCGGTCAACC GCG GGTAGATTTCG TTTTTCGTTCATAGG Daro_1815 1951810 - 1950902 - | formate dehydrogenase accessory protein TERM 1832 1951462 - 1951479 + g 81 -4.7 -5.00616 | overlap 1951463 CTTTGAGCGCTTTTT TCGCACC TTCG GGGGCGG TTTTTTCAAGGCGCA Daro_1816 1952557 - 1951937 - | formate dehydrogenase gamma subunit Daro_1817 1953441 - 1952554 - | formate dehydrogenase beta subunit Daro_1818 1955915 - 1953453 - | formate dehydrogenase alpha subunit Daro_1819 1956515 - 1955928 - | twin-arginine translocation pathway signal TERM 1833 1956573 - 1956556 - R 79 -9.9 -3.75332 | overlap 1956570 ATGTCGCAAGGGAAA CACGTTG CAAT CAACGTG CCATTGCAGGTAAGT TERM 1834 1956661 - 1956679 + r 100 -14.6 -4.66938 | CCATTTGGTGACTGA CCGGGACA AAT TGTCCCGG TTTTGTCTTGCGGGT Daro_1820 1958126 - 1956783 - | helicase, C-terminal:Type III restriction enzyme, res subunit:DEAD/DEAH box helicase, N-terminal TERM 1835 1956915 - 1956939 + g 74 -3.4 -4.86939 | gap 1 CGGGACGCCCTTACC GCCC-CGGCCG CCGG CGACCTTGGGC TTTTTCGGTTTCTTG TERM 1836 1956994 - 1957010 + g 76 -10.1 -3.72027 | overlap 1956995 AGTGGCACGCGATGA TCCGGCT CGA AGCCGGG TTCTTCCTCGCGGCT TERM 1837 1958177 - 1958142 - R 93 -8.2 -4.7497 | gap 1, opp_overlap 1958142 1958142 1958168, overlap 1958149 GGCAGGCAGTAAAAA GCGGAAAGGCGG-GAGT TTA ACCCGCCGCCGCTTCGC TGCCTTGGTCAATGA TERM 1838 1958167 - 1958149 - R 72 -8.8 -3.81062 | opp_overlap 1958142 1958142, overlap 1958142 AGTAAAAAGCGGAAA GGCGGG AGTTTAA CCCGCC GCCGCTTCGCTGCCT Daro_1821 1958546 - 1958193 - | DsrE-like protein Daro_1822 1960330 - 1958582 - | response regulator receiver:ATP-binding region, ATPase-like:histidine kinase A, N-terminal TERM 1839 1960103 - 1960070 - G 71 -8.9 -3.77278 | gap 1, opp_overlap 1960067 1960076, overlap 1960066 CAGAAAAAGAACGAA CGAAAGCGACAGCGAC AAG GT-GCTGACGATTTCG ACCTTTTGCGGGTTA Daro_1823 1961476 - 1960388 - | tRNA (uracil-5-)-methyltransferase Daro_1824 1963121 - 1961565 - | phosphonate ABC transporter inner membrane protein TERM 1840 1961826 - 1961868 + g 72 -11.8 -3.30159 | opp_overlap 1961812, overlap 1961815 GGCGAAGCCGCCCGG TGCGCCGGCCAGGCGCAGCG CCT TGCCGGGTGTGGGCGGCGCA TTGTCGAGCGCTTCG TERM 1841 1962187 - 1962169 - G 75 -8.1 -4.15044 | opp_overlap 1962183, overlap 1962170 TCGGGCGGGAAGAAA CCGGCGA TGAAT TCGCCGA TGGAATGGGCTGCTT Daro_1825 1963939 - 1963112 - | ABC transporter related TERM 1842 1963664 - 1963639 - G 72 -11.1 -3.35679 | gap 1, opp_overlap 1963659 GCTTGCCAGCCAGAA CGGCCGTC-ACG ACG CGTTGCCGGCCG GGAATCGGTGGTGAT TERM 1843 1963962 - 1963977 + r 76 -7.5 -4.1899 | opp_overlap 1963959, overlap 1963959 TTACTTCAGCAAGCC GGCCG AATGGG CGGCC TTTTCGATACCGTCG Daro_1826 1964828 - 1963947 - | phosphonate-binding periplasmic protein Daro_1827 1965079 - 1966476 + | helix-turn-helix, Fis-type TERM 1844 1967811 - 1967792 - g 74 -5.6 -4.45544 | opp_overlap 1967801, overlap 1967793 GGTGATGAACGAAAA GCTGGCGG CCAT CGGCCAAC TGACGGCCGGGGTTG Daro_1828 1966455 - 1968479 + | sensor histidine kinase Daro_1829 1968985 - 1968503 - | putative lipoprotein involved in nitrous oxide reduction TERM 1845 1968560 - 1968578 + g 90 -14.6 -3.47227 | CGTGATCCGTTCGAA GGGCAGGA TTT TCCTGCCC TTGTGATCCTTCAAG TERM 1846 1968957 - 1968937 - G 86 -14.7 -3.27525 | overlap 1968932 TTTGGGCAAAGGCAA GGCTGACGC AGA GCGCCAGCC CGAGACCGAGAAGCG Daro_1830 1969590 - 1968985 - | twin-arginine translocation pathway signal TERM 1847 1969446 - 1969467 + g 83 -4.3 -5.03314 | TCTCGAATTCGTTTT CCAGCGGCT TGGC ATCGGCTGG TTTTTTGGGAATGAA Daro_1831 1970371 - 1969670 - | hypothetical protein TERM 1848 1970269 - 1970259 - G 83 -4.6 -5.14965 | overlap 1970260 AGCTTCATGAAAAAA CCGG ACA CCAG CCCGCCGCACATGCC TERM 1849 1970502 - 1970484 - H 100 -7.3 -5.48825 | opp_overlap 1970500, overlap 1970485 GATCAGCCAAAAAAA TCCCCGC TGGGG GCGGGGG CAAAGGGAGAATGCC TERM 1850 1970501 - 1970485 - H 86 -10.8 -3.8821 | opp_overlap 1970500, overlap 1970484 ATCAGCCAAAAAAAT CCCCGC TGGGG GCGGGG GCAAAGGGAGAATGC TERM 1851 1971162 - 1971148 - g 70 -3.4 -4.67011 | opp_overlap 1971148 1971161 AACGCGATCGAAAAA CACCTG GTT CGGGCG CTGGTTTTCTTGCGT Daro_1832 1970701 - 1971198 + | sigma-70 region 2 Daro_1833 1971195 - 1972115 + | FecR protein TERM 1852 1973026 - 1973036 + G 79 -8.2 -4.4767 | overlap 1972993 1973011 GGATGGCCGCCTGCG CGGC CGG GCCG TTTTCTCCTACGTCG Daro_1834 1972199 - 1974562 + | TonB-dependent siderophore receptor Daro_1835 1974636 - 1975202 + | hypothetical protein Daro_1836 1977707 - 1975281 - | ATPase, E1-E2 type:copper-translocating P-type ATPase:heavy metal translocating P-type ATPase TERM 1853 1975702 - 1975744 + g 71 -8.5 -4.07568 | overlap 1975703 CCGACCTCGCGGGCG ACGTGGCTGGCGA-CGGCG TCCAGAT CGCCGGTCGCCA-TCACGG TTTTCAGGCCGAGGC TERM 1854 1975836 - 1975820 - G 79 -8.7 -4.14392 | opp_overlap 1975820 CGGCAATTGCGAAAA TGGCCAC CGA ATGGCCA TCTACTGCAGCAAAG TERM 1855 1977330 - 1977354 + g 74 -11.3 -3.54408 | opp_overlap 1977320 1977317, overlap 1977326 ATTGACCGAGGCGTA GCGCACGCGCG GGT CGCGCTTGAGC TTCATTTCGATGAGC Daro_1837 1978317 - 1977712 - | hypothetical protein TERM 1856 1977955 - 1977929 - G 72 -12.2 -3.05384 | opp_overlap 1977920, overlap 1977914 CGCGCCTGCAGCGAA CCTTCCGGCGGC GGT GCTGCCGGAATG ATCACCGCCTTGACT Daro_1838 1978705 - 1978328 - | hypothetical protein Daro_1839 1979384 - 1978896 - | cytochrome C biogenesis protein TERM 1857 1979013 - 1978992 - G 85 -12.3 -3.71848 | overlap 1979012 GCCGTCGATGAAGAA CGTGGTCGG CAGG CCAACCACG CCGTAACTGCGGGCA Daro_1840 1980393 - 1979386 - | hypothetical protein Daro_1841 1981067 - 1980393 - | ABC transporter related Daro_1842 1982197 - 1981064 - | hypothetical protein Daro_1843 1982489 - 1982160 - | hypothetical protein Daro_1844 1983046 - 1982489 - | electron transport protein SCO1/SenC TERM 1858 1983026 - 1983005 - G 76 -10.1 -3.75105 | overlap 1983006 GCAACCGAGCAACAA CGCCATCGC AAGG GCGACGGCA ATCAAGGCAAGTTTT TERM 1859 1983082 - 1983064 - R 100 -10.3 -5.26119 | TCCGGAAAAACAAAA GGCAGAC GCAAA GTCTGCC TGTGACGATGCCGCT Daro_1845 1983352 - 1983113 - | hypothetical protein TERM 1860 1983341 - 1983365 + g 80 -14.3 -3.05463 | overlap 1983327 GTTTATGATGCGCAG GGGATGCGACA TAT TGCCGCATCCC TTGCCTACCGCCACT Daro_1846 1983520 - 1983924 + | flagellar basal body-associated protein FliL Daro_1847 1983935 - 1984738 + | NAD-dependent deacetylase Daro_1848 1984893 - 1985450 + | phasin TERM 1861 1985499 - 1985530 + F 100 -16.1 -3.84246 | opp_overlap 1985505, overlap 1985505 CAGTCTGCGGCCACT GAAAAAGCCCTTG CCTGGT CAAGGGCTTTTTC TTTGATGATTCGGAA TERM 1862 1985505 - 1985524 + F 100 -9.3 -5.34309 | opp_overlap 1985505, overlap 1985499 GCGGCCACTGAAAAA GCCCTTG CCTGGT CAAGGGC TTTTTCTTTGATGAT TERM 1863 1985524 - 1985505 - f 91 -9.3 -4.65895 | opp_overlap 1985499 1985505 GCGGCCACTGAAAAA GCCCTTG CCTGGT CAAGGGC TTTTTCTTTGATGAT Daro_1849 1985557 - 1985736 + | hypothetical protein TERM 1864 1985754 - 1985784 + T 91 -11.3 -4.11216 | gap 1, opp_overlap 1985760, overlap 1985754 1985760 TGGCGGAACACGCAT G-AAAAACGGGGCT GGCT GGCCCCGTTTTTAC TTTTGAAGATACGCC TERM 1865 1985754 - 1985783 + T 75 -11.5 -3.06515 | opp_overlap 1985760, overlap 1985754 1985760 TGGCGGAACACGCAT GAAAAACGGGGCT GGCT GGCCCCGTTTTTA CTTTTGAAGATACGC TERM 1866 1985760 - 1985777 + T 100 -10.5 -5.0925 | opp_overlap 1985760, overlap 1985754 1985754 AACACGCATGAAAAA CGGGGCT GGCT GGCCCCG TTTTTACTTTTGAAG TERM 1867 1985777 - 1985760 - T 100 -9.8 -4.76644 | opp_overlap 1985754 1985754 1985760 AACACGCATGAAAAA CGGGGC TGGCTG GCCCCG TTTTTACTTTTGAAG Daro_1850 1988223 - 1985806 - | DNA topoisomerase IV subunit A TERM 1868 1986534 - 1986552 + g 71 -6.6 -4.1822 | overlap 1986536 CGGCTTCGATCAGCG TCCGGCGG TCG TCGCCGTA TTTCTTGGCATCGGC TERM 1869 1987284 - 1987300 + g 75 -7.9 -4.28254 | overlap 1987285 TGATGACCAGCTTCC ACTGGCC GCG GGCCAGG TTTTCGATCTTCCAC TERM 1870 1989567 - 1989619 + G 83 -15.8 -3.05384 | gap 1, opp_overlap 1989559, overlap 1989571 TGGAAATCGCGCTTT GGCAGTTT-GCCGGCGAACTGCC CATGCCCT GGCAATTTGCCGGCGAAATTGCC TTCGATGCCGAGCGG TERM 1871 1990562 - 1990537 - g 76 -8.9 -4.07568 | overlap 1990559 GCTGGGCGCCGAAAA GCCGTCGCCCG ACAT CATGCAACGGC CGCCACGTCCGCGTG Daro_1851 1988384 - 1991026 + | ATPase, E1-E2 type TERM 1872 1991041 - 1991007 - f 70 -10.7 -2.73007 | gap 2, opp_overlap 1991017, overlap 1991006 AAGAGGTGCGCAAAT GGCTGGTCCGGCGCGGC TAA GGCGCACCG--CCAGCC GGCTTTCAGGCGGAT TERM 1873 1991763 - 1991743 - g 72 -12.5 -3.05596 | GAGTGGGTGATCGAA GGTCTGGCC GAT GGCCTGACC TCGGAACGTATCGAA TERM 1874 1992612 - 1992588 - g 89 -12.2 -4.09685 | gap 1, overlap 1992608 GCTGATCGTCGAAAA GCGGCTGCTCG GCTA CGA-CAGCCGC TAGCGGCCGGGCTTC Daro_1852 1991200 - 1992615 + | hypothetical protein Daro_1853 1992665 - 1993174 + | hypothetical protein TERM 1875 1993200 - 1993220 + F 100 -11.8 -4.87133 | TGGTGTCAGTGCGAA GGCCCGCT CTTGT GGCGGGCC TTTTCTTTGCCCGCT Daro_1854 1993479 - 1994801 + | serine/threonine protein kinase Daro_1855 1996703 - 1994787 - | radical SAM family protein TERM 1876 1994820 - 1994846 + g 73 -5 -4.65895 | CGCCTTCGAAATCTT GTGACGAGCC ACGGTCG GGCGCGGCAC TTTTTCGCTGAACCA TERM 1877 1995216 - 1995248 + g 89 -6.8 -5.15634 | opp_overlap 1995214 ATCGGTGAAGGCACG GGTGACGCGGGCGA CCTGA TCGACCGAGACGCC TTTTTTCATCAGGTC TERM 1878 1995478 - 1995466 - G 71 -6.2 -4.371 | opp_overlap 1995466 1995472 TCGACGAGATGAAAA CCGG TATGG CCGG TTTCGGCGATGATCT TERM 1879 1996746 - 1996734 - R 74 -3.3 -4.98531 | overlap 1996735 CGTGGAAACGAAAAA CCGCT TGG AGCGT ACTAGTCAGTTGCAC Daro_1856 1997648 - 1996902 - | hypothetical protein Daro_1857 1998185 - 1997757 - | GCN5-related N-acetyltransferase Daro_1858 1999556 - 1998522 - | patatin Daro_1859 1999914 - 1999624 - | hypothetical protein TERM 1880 1999798 - 1999782 - G 71 -7.9 -4.07568 | GTTCTCCCCCGAAAA CGGCCAG TTT CTCGCCG CGAAAGACCAGTTCG Daro_1860 2000312 - 1999911 - | hypothetical protein TERM 1881 2000286 - 2000317 + g 70 -3.7 -4.62475 | TAGGCAGGCGAGTAA CAGCAGTGCGTGG GGTTGG CGATGCATTGTTG TTTTCCTTTGTGCGT Daro_1861 2000525 - 2001382 + | hypothetical protein Daro_1862 2001582 - 2002409 + | ABC-type phosphate/phosphonate transport system periplasmic component-like protein TERM 1882 2002432 - 2002465 + T 95 -15.5 -2.61264 | opp_overlap 2002437, overlap 2002437 TTTGCCAATGCGATA AAAAAGGCCATATCC CGCG GGATATGGCCTTTTG CTTGTCCGTGCCGAG TERM 1883 2002437 - 2002460 + T 100 -15.4 -4.50058 | opp_overlap 2002437, overlap 2002432 CAATGCGATAAAAAA GGCCATATCC CGCG GGATATGGCC TTTTGCTTGTCCGTG TERM 1884 2002460 - 2002437 - T 100 -15.4 -5.27923 | opp_overlap 2002432 2002437 CAATGCGATAAAAAA GGCCATATCC CGCG GGATATGGCC TTTTGCTTGTCCGTG argC 2003434 - 2002484 - | N-acetyl-gamma-glutamyl-phosphate reductase Daro_1864 2004388 - 2003507 - | patatin TERM 1885 2004083 - 2004093 + g 71 -5.4 -4.42386 | GATCTTTTCGTCGAG TTGC TGG GCAA TTTTCTGCATGGCAA TERM 1886 2004151 - 2004110 - G 73 -10 -3.59979 | gap 1 TTTCTGCATGGCAAA GGCGTCGTAGCCGGC-CGC GTAGA GCGAGCCGACGACGGCCCC GGCACTGGTGCCGAC Daro_1865 2004700 - 2004416 - | hypothetical protein Daro_1866 2005628 - 2004792 - | hypothetical protein Daro_1867 2007714 - 2005726 - | DNA topoisomerase IV subunit B TERM 1887 2006213 - 2006225 + g 75 -7.7 -4.20783 | overlap 2006205 CGCAGGCCGGTGACA TCGAC GCT GTCGA TTTGTTCGATGCCGT TERM 1888 2007009 - 2007019 + g 75 -8.2 -4.25104 | overlap 2006978 TTTCGTTCAGGTAGT CGGC CAT GCCG TTTTCGTAGCACCAG TERM 1889 2008412 - 2008427 + G 70 -3.2 -4.61633 | gap 1, opp_overlap 2008409, overlap 2008409 CTTCCCAAGTCACGA CTGCCGG AGG CCG-CGG TTTTTACGGATATCT Daro_1868 2007794 - 2008444 + | dihydropteridine reductase TERM 1890 2009023 - 2009041 + G 76 -12.4 -3.37344 | overlap 2009029 GATCCTGGTTCCCTT GGCGCTGG CGA TCAGCGCC TTCATTCCGTGGGCG Daro_1869 2008799 - 2009725 + | hypothetical protein Daro_1870 2009722 - 2010765 + | hypothetical protein TERM 1891 2011019 - 2011005 - g 78 -4.2 -4.77165 | GTGCTGATAAGAAAA TTCGGG CCA CCTGAA GAGCAAGGCAGATAT TERM 1892 2011153 - 2011178 + G 78 -4.7 -4.75967 | gap 1, overlap 2011153 2011154 CATCAAATCTATATA C-CCACTTTGGT CAG ACCGGGGTGGCG TTCTTTTTTATGATT TERM 1893 2012099 - 2012087 - g 77 -3.4 -4.96996 | GCGAAATAAAATAAA TTCC TATTC GGAA GCTGGTGGAGTAAAA Daro_1871 2010927 - 2012120 + | acyltransferase 3 Daro_1872 2012927 - 2012355 - | hypothetical protein TERM 1894 2012488 - 2012512 + g 74 -4.1 -4.81863 | opp_overlap 2012477, overlap 2012489 2012490 TAGAGTGCCGGCACT GTGCCGGGCAG CAT CTGGTCGGCGG TTTTCTTCTGGCTTT Daro_1873 2013074 - 2014270 + | hypothetical protein Daro_1874 2014834 - 2014292 - | cyclase/dehydrase Daro_1875 2017930 - 2014841 - | heavy metal efflux pump CzcA Daro_1876 2019054 - 2017927 - | secretion protein HlyD Daro_1877 2020292 - 2019051 - | Outer membrane efflux protein TERM 1895 2019592 - 2019602 + g 83 -4.6 -5.06414 | TCGTCAAGCGGAGCG GCGC TGA GTGC TTTTTCTTCAAGCGC TERM 1896 2019844 - 2019857 + g 76 -5.9 -4.72272 | opp_overlap 2019831 AACGCGGCGGTATCG CGGGC CAGG GCCTG TTTTTCCTGGGCCAG TERM 1897 2021031 - 2021015 - g 70 -3.5 -4.60487 | overlap 2021016 TATTACCTGGAAAAA CCGGCCG ATG CTGCCGC GCGTGACGAGTAGCC Daro_1878 2020355 - 2021044 + | response regulator receiver:transcriptional regulatory protein, C-terminal TERM 1898 2021626 - 2021665 + G 72 -12.1 -3.01791 | gap 1 TGCGTTCCGAACTGG CCGACCGCTCGCAGGCCG ACTTG CGGCCGGTGA-CGGTCGA TGTTCCCGAAGAAAT Daro_1879 2021022 - 2022425 + | sensor histidine kinase Daro_1880 2022893 - 2022480 - | hypothetical protein Daro_1881 2023267 - 2022902 - | hypothetical protein Daro_1882 2023803 - 2023264 - | Lipocalin-related protein and Bos/Can/Equ allergen Daro_1883 2023931 - 2024359 + | hypothetical protein TERM 1899 2024962 - 2024981 + G 71 -7.8 -4.07568 | GCACAGCCGGAGTTT CTGTCGAC GCTG GTCGTCAG TTTTCCCAAGGGCGA Daro_1884 2024356 - 2025246 + | radical SAM family protein Daro_1885 2026457 - 2025249 - | major facilitator transporter TERM 1900 2026270 - 2026246 - G 89 -9.9 -4.5442 | CGGTCAACCAGAAAA CCGGCACTGGC CTG ACCGATGCCGG AGACGATGAAAAACA TERM 1901 2026311 - 2026284 - G 81 -5.5 -4.79223 | GGAGACGATGAAAAA CACGGTCATCG TGGTGC CGATGGCGGTG AAACTGAGCCCGAAC Daro_1886 2026546 - 2027367 + | AraC family transcriptional regulator TERM 1902 2027705 - 2027685 - g 80 -4 -5.15167 | gap 2 TACGACGAACAAAAA GTC-GCC-GC CCT GCTGGCCGAC CCCGGCATCATCCGC Daro_1887 2027454 - 2028044 + | DNA-3-methyladenine glycosylase I TERM 1903 2029116 - 2029126 + G 71 -6.8 -4.28111 | opp_overlap 2029115 2029116 TGGTTGAAGGAAAAT GCGA CCA TCGC TTTATTGATCGTGTC Daro_1888 2028272 - 2029585 + | hypothetical protein Daro_1889 2030152 - 2029754 - | methionine sulfoxide reductase B TERM 1904 2029897 - 2029922 + g 93 -11.9 -4.3534 | overlap 2029898 GGATCATGCCGAAGC TCTGATCGACG TGCT CGTCGATCAGC TTTTCATCGTTAGGC TERM 1905 2029898 - 2029921 + g 85 -15.4 -3.20722 | overlap 2029897 GATCATGCCGAAGCT CTGATCGACG TGCT CGTCGATCAG CTTTTCATCGTTAGG Daro_1890 2031156 - 2030224 - | AraC family transcriptional regulator TERM 1906 2030475 - 2030519 + g 89 -12.2 -4.07568 | gap 1 AACGGCTCATGTTTG CCAGAC-TGGCCAGCCGTTCG ATGC TGAGCGGCTGGTCAAGGTTGG TTTTCAGCCAGCCAA Daro_1891 2031356 - 2031814 + | ferredoxin:(2Fe-2S)-binding TERM 1907 2032817 - 2032785 - g 80 -15 -3.00298 | gap 1, overlap 2032801 GTTGCCAAGCAGACA GGCGACA-CGGCAAA AACC TTTGCCGGTGCCGCC AAGGTGGTCAGTGCC TERM 1908 2032821 - 2032801 - g 76 -5.3 -4.64766 | overlap 2032785 GCGACACGGCAAAAA CCTTTGCCG GTG CCGCCAAGG TGGTCAGTGCCTCTT Daro_1892 2031825 - 2034023 + | twin-arginine translocation pathway signal TERM 1909 2034975 - 2034960 - g 81 -4.6 -5.0133 | overlap 2034947 GACGGCTGTAAAAAA CGGCCA GAAT TCGCCG TCGACCGAAGCCGTC Daro_1893 2034025 - 2035020 + | hypothetical protein Daro_1894 2035017 - 2035616 + | hypothetical protein Daro_1895 2035689 - 2036384 + | YgfB and YecA TERM 1910 2036543 - 2036524 - T 100 -13.6 -4.05714 | opp_overlap 2036524 ATGTCCAAGCAGAAA CGGAACCC AGGC GGGTTCCG TTTTTTATTGTGTCT TERM 1911 2036524 - 2036543 + T 100 -13.6 -5.62045 | opp_overlap 2036524 ATGTCCAAGCAGAAA CGGAACCC AGGC GGGTTCCG TTTTTTATTGTGTCT Daro_1896 2039159 - 2036562 - | PAS/PAC sensor hybrid histidine kinase TERM 1912 2036802 - 2036816 + g 70 -4.9 -4.57073 | opp_overlap 2036795 2036793 CAAAATCAGGTCGTA GCGGC CGGCA GTCGC TTTTTCGACAGCCTC Daro_1897 2041337 - 2039322 - | metal-dependent phosphohydrolase TERM 1913 2040473 - 2040493 + g 72 -11.1 -3.34043 | opp_overlap 2040464 2040460, overlap 2040468 AATCGATCAGCAGGT TGCCGCTGG CAT CCAGCGGAA TTCTCCGATGATCCC TERM 1914 2040800 - 2040825 + g 75 -7.6 -4.24002 | overlap 2040799 GAACTTTGGGTGGCG CACGGCCA GTCGTGCTTG TGGCCGTG TTTTCGAATTTGAGG Daro_1898 2041953 - 2041357 - | OmpA/MotB Daro_1899 2042399 - 2041956 - | hypothetical protein TERM 1915 2042361 - 2042347 - G 80 -10 -4.10161 | opp_overlap 2042338, overlap 2042337 GACGATTCGGCAAAA GCCGAT GCT ATCGGC AGCAGGGCGATGAAA TERM 1916 2042597 - 2042571 - R 100 -11.7 -4.77036 | opp_overlap 2042571, overlap 2042585 CGCCATTATTAAAAA TGCCTTCCACA AAGGG TATGGAAGGCA TTCCTGGCCAACTTA Daro_1900 2044138 - 2042669 - | peptidase S1C, Do TERM 1917 2043655 - 2043671 + g 74 -12.3 -3.18199 | CGCTTGCCTTGTCCA GGCCAAG CAC CTTGGCC TTGAATTCGCGCTTG Daro_1901 2044489 - 2044175 - | hypothetical protein TERM 1918 2044384 - 2044350 - G 72 -12.9 -3.11687 | gap 1, overlap 2044354 GCAACCAGCAGCGAA CGAAGCATGTGCCGGC AATG GCCGGCA-ACGCGTCG GGGTGGCCTGACGGC TERM 1919 2044380 - 2044354 - G 72 -10.9 -3.38316 | gap 1, overlap 2044350 CCAGCAGCGAACGAA GCATGTGCCGGC AATG GCCGGCA-ACGC GTCGGGGTGGCCTGA TERM 1920 2045117 - 2045100 - g 74 -3.3 -4.81551 | gap 1, overlap 2045102 GAGGCAGAGGAAAAA CTGGTCGC AGA GCG-CCTG GGGACCGTTCAGGAG Daro_1902 2044821 - 2046464 + | histidine kinase, HAMP region: chemotaxis sensory transducer Daro_1903 2046664 - 2047146 + | nucleoside 2-deoxyribosyltransferase Daro_1904 2047537 - 2047175 - | cupin region Daro_1905 2048001 - 2047534 - | CreA Daro_1906 2049074 - 2048025 - | patatin Daro_1907 2050500 - 2049139 - | DNA polymerase III, epsilon subunit TERM 1921 2050724 - 2050756 + H 88 -12.1 -3.68244 | GGCTGATCCTACCAT TGCCTATGGTTCAGC CAG GTTGAGCCATAGGAA TTTCAGCTTCCTACT Daro_1908 2050743 - 2051024 + | hypothetical protein TERM 1922 2051945 - 2051966 + G 75 -7.9 -4.26903 | ACCGTCCATGAGGTC TTGCCGCCG GACG TGGCGGCCA TTTTCATCCAGTCGC Daro_1909 2051381 - 2053879 + | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) Daro_1910 2054111 - 2053848 - | hypothetical protein TERM 1923 2053959 - 2053936 - G 90 -5.2 -5.40072 | gap 1 GCTCGGTGAAAAAAA GCACCAGCCGC AAA GCGAC-GACGC AAGCGAAAGAAGCCC Daro_1911 2055079 - 2054177 - | AraC family transcriptional regulator Daro_1912 2055161 - 2055709 + | hypothetical protein TERM 1924 2055861 - 2055830 - g 100 -16 -4.56597 | gap 1, overlap 2055831 2055832 CTTGTGCGCGAAAAA CGCCAGGCCCTGATC GCC GATCAGGGCCT-GCA CATCGAGACACCCCG TERM 1925 2055860 - 2055831 - g 93 -17.3 -3.33744 | gap 1, overlap 2055830 2055832 TTGTGCGCGAAAAAC GCCAGGCCCTGATC GCC GATCAGGGCCT-GC ACATCGAGACACCCC TERM 1926 2055860 - 2055832 - g 83 -17.5 -2.60032 | overlap 2055831 2055830 TGTGCGCGAAAAACG CCAGGCCCTGATC GCC GATCAGGGCCTGC ACATCGAGACACCCC Daro_1913 2055731 - 2056645 + | ketopantoate reductase ApbA/PanE TERM 1927 2056688 - 2056727 + T 76 -9.4 -3.76968 | opp_overlap 2056689, overlap 2056689 GTGGCTGAATAAAAA ATGGGCGGAGCAAA AAAGGATTCGAA TTTGCTCCGCCCAA TTTGATCAGTCAGTT TERM 1928 2056689 - 2056726 + T 82 -12.9 -2.85699 | opp_overlap 2056689, overlap 2056688 TGGCTGAATAAAAAA TGGGCGGAGCAAA AAAGGATTCGAA TTTGCTCCGCCCA ATTTGATCAGTCAGT TERM 1929 2056726 - 2056689 - T 100 -12.9 -5.4505 | opp_overlap 2056689 2056688 TGGCTGAATAAAAAA TGGGCGGAGCAAA AAAGGATTCGAA TTTGCTCCGCCCA ATTTGATCAGTCAGT Daro_1914 2057543 - 2056737 - | Alpha/beta hydrolase fold TERM 1930 2057210 - 2057191 - G 71 -9.2 -3.72695 | ACCGGCGCCAGGAAA GCCACGGC CCGC GCCGTGCC CCGTTCGAGAAATCG Daro_1915 2058160 - 2057726 - | hypothetical protein TERM 1931 2058173 - 2058205 + r 70 -9.9 -3.1485 | gap 2, opp_overlap 2058173 2058174, overlap 2058165 2058174 2058176 CAACGTTTGAATTAA C-CGG-CTGGCGCGG CTTTA TCGCGCCAGTCCGTG TTGAATGATTGGTTA TERM 1932 2058174 - 2058203 + r 87 -13.6 -3.12862 | gap 1, opp_overlap 2058173 2058174, overlap 2058173 2058165 2058176 AACGTTTGAATTAAC CGG-CTGGCGCGG CTTTA TCGCGCCAGTCCG TGTTGAATGATTGGT TERM 1933 2058203 - 2058174 - R 81 -12.9 -2.60571 | gap 1, opp_overlap 2058173 2058165 2058174 2058176, overlap 2058173 AACGTTTGAATTAAC CGG-CTGGCGCG GCTTTAT CGCGCCAGTCCG TGTTGAATGATTGGT Daro_1916 2059056 - 2058223 - | nucleic acid-binding protein Daro_1917 2059820 - 2059158 - | hypothetical protein TERM 1934 2059895 - 2059864 - R 100 -11.8 -5.09225 | opp_overlap 2059864 ACGTCACTGAAAAAA TCCATATTTGGATA TCTA TAGCCAAATATGGA CACATGTTTCCATTA Daro_1918 2060348 - 2060019 - | hypothetical protein TERM 1935 2060448 - 2060401 - R 85 -11.5 -3.58343 | gap 1, opp_overlap 2060401 2060447, overlap 2060402 CTGACTACCCCGAAA GCCTGCGGTCGACGTGAAAAAT AGCCA ATTTTCGACGTCGACCGTAG-C AGCTGTTCCGCTGCT TERM 1936 2060448 - 2060402 - R 73 -11.7 -2.74792 | opp_overlap 2060401 2060447, overlap 2060401 TGACTACCCCGAAAG CCTGCGGTCGACGTGAAAAAT AGCCA ATTTTCGACGTCGACCGTAGC AGCTGTTCCGCTGCT Daro_1919 2063930 - 2060463 - | SMC protein, N-terminal TERM 1937 2061342 - 2061366 + g 84 -6.3 -4.9218 | GAGTGCGGTTTGCCA GGCAGTCGATG CCT CGTCCACGGCC TTTTTCTGCTGCGTG TERM 1938 2062164 - 2062199 + g 74 -3.2 -4.8622 | gap 1, opp_overlap 2062182, overlap 2062158 2062166 CTCGGTTTTGGCTTG CTGGCCTTTCT-GGACC AAT GCTTCGAGCAAGGCCTG TTTTTCCTTGAGCGC TERM 1939 2062394 - 2062422 + g 71 -6.6 -4.26076 | overlap 2062395 GGGCGGCGAGTTCCT TGTGCTGCTCGC GCAGG GCGACCAGCGCC TTTTCCTGGGCCTCG TERM 1940 2062570 - 2062621 + g 83 -4.3 -5.0538 | gap 1, overlap 2062566 2062572 CCTTGCCAGTGCTGG CGCAGTTCGGCCAGGGTCTG-GCC GGCCA GGCGCAGGTTCTGCTCGGTCTGGG TTTTTTCCAGTGCGG Daro_1920 2065171 - 2063927 - | exonuclease subunit SbcD Daro_1921 2066882 - 2065308 - | fumarate reductase/succinate dehydrogenase flavoprotein, N-terminal:FAD dependent oxidoreductase Daro_1922 2068387 - 2066879 - | glycerol kinase TERM 1941 2068473 - 2068484 + H 90 -7.2 -5.06816 | AACAGAGGGGCGTTT CGGC GATT GCCG TTTTTATTGCGGGCT TERM 1942 2068662 - 2068681 + G 95 -5.7 -5.60993 | gap 1, opp_overlap 2068652 GAAATCGGCAATCTG GCG-GCAG GTGCG CTGCTCGC TTTTTTTCTGAAAGA Daro_1923 2068566 - 2068841 + | hypothetical protein Daro_1924 2068834 - 2069079 + | hypothetical protein TERM 1943 2069269 - 2069280 + G 71 -7.2 -4.1466 | overlap 2069268 ATTCTTTGCCTCAAG GGCG ACGC CGCC TTTTCCGCCTTCCGT TERM 1944 2070310 - 2070300 - g 71 -8.2 -4.08216 | overlap 2070301 GCAGGCGTGGGAAAA GGCC TAC GGCC GCCCGTCGCGCATCG TERM 1945 2072140 - 2072118 - g 76 -9 -4.11216 | opp_overlap 2072134 CGCCGACCGCGAAAA GGTCACGCCG ATC CTGCGTGCCC TGCGTGTGCCTTACC Daro_1925 2069245 - 2073174 + | phosphoribosylformylglycinamidine synthase TERM 1946 2073196 - 2073213 + F 100 -11.3 -4.45151 | opp_overlap 2073196 CGACGTTGAACAAAA GGGACTC TGCG GAGTCCC TTTTCATTGCCTGTT TERM 1947 2073213 - 2073196 - f 100 -11.3 -4.64676 | opp_overlap 2073196 CGACGTTGAACAAAA GGGACTC TGCG GAGTCCC TTTTCATTGCCTGTT Daro_1926 2073316 - 2073939 + | hypothetical protein TERM 1948 2073933 - 2073918 - T 90 -4.6 -5.33405 | overlap 2073919 TGCACGAAAGAAAAA GGTCGG AAAG CCGACT GCCTGATTTCCCAGG TERM 1949 2074017 - 2074037 + T 100 -14.1 -4.90296 | opp_overlap 2074017 GGCTGAAATGAAAAA TGGCACAGA GTT TCTGTGCCA TTTTTCTGGGCTTTT TERM 1950 2074037 - 2074017 - T 100 -14.1 -4.98531 | opp_overlap 2074017 GGCTGAAATGAAAAA TGGCACAGA GTT TCTGTGCCA TTTTTCTGGGCTTTT Daro_1927 2074410 - 2074069 - | hypothetical protein Daro_1928 2075077 - 2074517 - | Appr-1-p processing TERM 1951 2075473 - 2075452 - g 76 -6.5 -4.56597 | opp_overlap 2075436 2075455 GCCTTGTGCCAAAAA CAAGGGGTG GTTG CAGCCCCTG ATTCCGGTGGCTGGC Daro_1929 2075285 - 2075851 + | rhodanese-like protein TERM 1952 2075894 - 2075879 - T 93 -11.8 -4.19238 | opp_overlap 2075879 TCGGTAATGCCAAAA GGCGGC TGCG GCCGCC TTTTTTTATTGCAGG TERM 1953 2075879 - 2075894 + T 100 -11.8 -5.7946 | opp_overlap 2075879 TCGGTAATGCCAAAA GGCGGC TGCG GCCGCC TTTTTTTATTGCAGG Daro_1930 2076064 - 2075900 - | hypothetical protein Daro_1931 2076827 - 2076471 - | hypothetical protein TERM 1954 2077550 - 2077568 + G 72 -11.6 -3.35616 | opp_overlap 2077548, overlap 2077549 GCCCGGTGACACAGT GGCCGTCG AGT CGCCGGCC TATTATCTGATGCTC TERM 1955 2077788 - 2077755 - g 71 -8 -4.12738 | gap 1, opp_overlap 2077763 CCAGACGAAAGGAAA CGCCTGTTCGCGACG CTGAC CGCCGCGCGC-GGCG TCGCAGTGATTGAAG TERM 1956 2078102 - 2078120 + G 82 -12.4 -3.63744 | overlap 2078101 CCAGGTGGAGGCCAT GCGGCTGG CCG TCAGCCGC TATTTTCCGGCAGCG Daro_1932 2076951 - 2078381 + | GntR family transcriptional regulator TERM 1957 2078417 - 2078433 + F 70 -4.4 -4.58283 | TCATTGCCCCCTTTT GGCAAG CAGCT TTTGCC TTTTTGAACGCATTC TERM 1958 2080134 - 2080120 - g 77 -11.4 -3.64703 | opp_overlap 2080088 2080107 2080120 TGTTCCGGATGGAAA CCGGCA AGC TGCCGG CTTATACGGGAGTTG Daro_1933 2078466 - 2080352 + | PpiC-type peptidyl-prolyl cis-trans isomerase TERM 1959 2080395 - 2080376 - f 86 -9.2 -4.30034 | opp_overlap 2080378, overlap 2080378 AAAACTTCATGAAAA CAGCGGGC TGCG GCCCGCTT TTTTATATGCAGTTG TERM 1960 2080393 - 2080378 - f 88 -11.8 -3.74158 | opp_overlap 2080378, overlap 2080376 AACTTCATGAAAACA GCGGGC TGCG GCCCGC TTTTTTATATGCAGT TERM 1961 2080378 - 2080393 + F 100 -11.8 -5.37043 | opp_overlap 2080376 2080378 AACTTCATGAAAACA GCGGGC TGCG GCCCGC TTTTTTATATGCAGT TERM 1962 2081959 - 2081943 - g 71 -6.5 -4.18494 | opp_overlap 2081943 2081942, overlap 2081944 GAGCGGGATGGAAAA GTGACCG GGG CGGTCAA CGTATTTCGGGACAT TERM 1963 2082973 - 2082991 + G 71 -6.7 -4.23647 | overlap 2082983 CCGGGATCGGCATGA GTGCCGA GCAGA TTGGCAC TTTGTTCAATCCTTT Daro_1934 2080560 - 2083607 + | PAS/PAC sensor hybrid histidine kinase TERM 1964 2083609 - 2083650 + T 77 -6.6 -4.57569 | gap 1, opp_overlap 2083616, overlap 2083611 2083616 2083649 TGTCCAAACCATAAA TTAAAAACGCCGA-CCGGT ATAAA ACCGGATCGGCGTTTTGCC TTTTTGCGGCGCTGG TERM 1965 2083611 - 2083648 + T 84 -13.6 -2.60211 | gap 1, opp_overlap 2083616, overlap 2083609 2083616 TCCAAACCATAAATT AAAAACGCCGA-CCGGT ATAAA ACCGGATCGGCGTTTTG CCTTTTTGCGGCGCT TERM 1966 2083616 - 2083643 + T 100 -13.5 -4.4874 | gap 1, opp_overlap 2083616, overlap 2083611 2083609 ACCATAAATTAAAAA CGCCGA-CCGGT ATAAA ACCGGATCGGCG TTTTGCCTTTTTGCG TERM 1967 2083643 - 2083616 - T 100 -13.5 -5.05505 | gap 1, opp_overlap 2083616 2083611 2083609 ACCATAAATTAAAAA CGCCGA-CCGGT ATAAA ACCGGATCGGCG TTTTGCCTTTTTGCG TERM 1968 2083651 - 2083674 + T 82 -11.8 -3.54146 | overlap 2083649 GATCGGCGTTTTGCC TTTTTGCGGC GCTG GCCGCGAAAA TATTTACTTAGGCCG Daro_1935 2084479 - 2083682 - | enoyl-[acyl-carrier-protein] reductase [NADH] TERM 1969 2084560 - 2084520 - R 100 -17.1 -4.06384 | gap 2, opp_overlap 2084521, overlap 2084521 CCGCAAGATTATAAA CCGGGAAACCGCGATTCGC GGTAT GCGAA-CGCGGTTT-CCGG TTTCTGCTTACATAT TERM 1970 2084521 - 2084560 + r 100 -18 -4.07306 | gap 1, opp_overlap 2084520 2084521 CGCAAGATTATAAAC CGGGAAACCGCGATTCGCG GTA TGCGAA-CGCGGTTTCCGG TTTCTGCTTACATAT TERM 1971 2084560 - 2084521 - R 100 -17.3 -3.03348 | gap 1, opp_overlap 2084521, overlap 2084520 CGCAAGATTATAAAC CGGGAAACCGCGATTCGC GGTAT GCGAA-CGCGGTTTCCGG TTTCTGCTTACATAT Daro_1936 2086214 - 2084568 - | electron transfer flavoprotein-ubiquinone oxidoreductase TERM 1972 2086065 - 2086082 + g 89 -9.8 -4.65895 | opp_overlap 2086064 2086063 2086058 ACCGGAAAGAATATG GGCGCC AATTTC GGCGCC TTTTTCGATCAGGCA Daro_1937 2086303 - 2086713 + | thioesterase superfamily protein Daro_1938 2086749 - 2088095 + | deoxyguanosinetriphosphate triphosphohydrolase Daro_1939 2088163 - 2088768 + | LexA repressor TERM 1973 2089212 - 2089236 + GF 81 -5.5 -4.7889 | overlap 2089216 2089217 GCCCTGCGTCGCTTG CAGGTGGCCGC CGA GGGGCGACCGG TTTTTGCCTGTTTAT Daro_1940 2088768 - 2089490 + | SOS cell division inhibitor SulA TERM 1974 2090301 - 2090267 - gf 86 -6.2 -5.03715 | opp_overlap 2090267 ACGATGGGGAAAAAA CGCCGCTGGCCTTG CGTTTTT CCGAGCCTGCGGCG GACGAGGGGCGATTC Daro_1941 2089423 - 2090862 + | hypothetical protein TERM 1975 2091099 - 2091109 + G 72 -2.4 -4.85599 | GATGACCGTCGATGG CCTG AAG CTGG TTTTTCTGGCCTGCA TERM 1976 2093675 - 2093663 - g 76 -5.5 -4.65895 | opp_overlap 2093663 CGGCCGATCTAAAAA TGGCG GGG CACCA TACCTTGATCCGATC Daro_1942 2090875 - 2093958 + | DNA polymerase III, alpha subunit TERM 1977 2094097 - 2094085 - f 70 -5.5 -4.41241 | overlap 2094086 GAAATCGTGACAAAA CGCAC AGC GTGCA ACCCCTAATCATCAT TERM 1978 2095637 - 2095624 - g 70 -4.5 -4.46072 | GCCAAGAAAGACAAA GCGAT GAAA ACCGC GGAGGCAATGGTCAA TERM 1979 2096497 - 2096480 - g 75 -7.7 -4.15044 | gap 1, opp_overlap 2096479 2096480 TGGCTCGTGAAGAAA CCAGCGGC AAT GCC-CTGG CTTTGGTCGACGCGC Daro_1943 2094187 - 2097045 + | TPR repeat-containing protein Daro_1944 2097183 - 2098007 + | hypothetical protein TERM 1980 2098055 - 2098027 - T 100 -20.5 -4.56597 | opp_overlap 2098033, overlap 2098033 CGCTTCTGCTAAAAA GAAAAACGGCACC TTG GGTGCCGTTTTTC TTGGAGGGAAAGCCG TERM 1981 2098033 - 2098049 + T 100 -13.7 -5.06414 | opp_overlap 2098033 2098027 TGCTAAAAAGAAAAA CGGCACC TTG GGTGCCG TTTTTCTTGGAGGGA TERM 1982 2098049 - 2098033 - T 100 -13.7 -5.61881 | opp_overlap 2098033, overlap 2098027 TGCTAAAAAGAAAAA CGGCACC TTG GGTGCCG TTTTTCTTGGAGGGA Daro_1945 2098358 - 2098098 - | putative acyl-carrier-protein Daro_1946 2100128 - 2098362 - | Beta-lactamase TERM 1983 2098590 - 2098580 - G 71 -6.8 -4.25104 | CTTCCTTGAGCAAAA GCCT GTC AGGC GATGGGCCATCAATC TERM 1984 2098645 - 2098664 + g 78 -4.9 -4.77757 | overlap 2098647 AGATTTTGCCGGAAT CGCTCGG GAATGA CCGAGGG TTTTAGTTTTTCACC Daro_1947 2100262 - 2101011 + | Serine O-acetyltransferase TERM 1985 2101487 - 2101477 - g 78 -2.4 -5.03994 | CGCGAGAGACAAAAA CGCG GTG CGGG TGTAACAGTGCTCGA Daro_1948 2101069 - 2101572 + | BadM/Rrf2 family transcriptional regulator Daro_1949 2101581 - 2102738 + | aminotransferase, class V Daro_1950 2102758 - 2103975 + | cysteine desulfurase IscS Daro_1951 2104019 - 2104402 + | scaffold protein TERM 1986 2104603 - 2104578 - g 85 -9.1 -4.63218 | gap 1 GGTCTTCGAACAAAA TGGCGTCAA-GA TCA TCGTCGACGCCA AGAGCTTGCCTTACC Daro_1952 2104405 - 2104728 + | HesB/YadR/YfhF:Iron-sulphur cluster assembly protein IscA TERM 1987 2104942 - 2104928 - g 70 -3.5 -4.61231 | gap 1 CCAGACGCTGAAAAA GC-CGC TGGA GCGCGC CAAGTACCTCCTGCA hscB 2104728 - 2105255 + | co-chaperone HscB TERM 1988 2105702 - 2105729 + G 73 -9.8 -3.65542 | overlap 2105701 TCTCGGTGGCGACCT GGTTGGGGCGGT GATC ACCGTGCCAGCC TATTTTGACGATGCC hscA 2105259 - 2107148 + | chaperone protein HscA Daro_1955 2107145 - 2107489 + | ferredoxin, 2Fe-2S type Daro_1956 2107486 - 2107680 + | hypothetical protein TERM 1989 2107766 - 2107778 + G 83 -4.7 -5.03715 | GACTTGCAGCGACAC GCCAG TGA CCGGC TTTTTTCGCGATGGT Daro_1957 2107689 - 2108084 + | hypothetical protein Daro_1958 2108086 - 2108400 + | hypothetical protein Daro_1959 2108425 - 2108652 + | hypothetical protein Daro_1960 2108649 - 2108846 + | hypothetical protein Daro_1961 2108851 - 2109105 + | hypothetical protein Daro_1962 2109956 - 2109117 - | phosphoserine phosphatase TERM 1990 2109645 - 2109660 + g 70 -4.6 -4.56597 | overlap 2109640 GGCCGCTTCGGTGAC GGCCGA CACT TCGTCC TTTTTGCCGGCGAAA Daro_1963 2110183 - 2109986 - | hypothetical protein Daro_1964 2111291 - 2110218 - | phospho-2-dehydro-3-deoxyheptonate aldolase TERM 1991 2110978 - 2110997 + g 70 -3.4 -4.59773 | overlap 2110980 TTGATATAACCTTTC CAGCCCAC TGTG GTGCGCGG TTTTTCGAAATAGAC Daro_1965 2114736 - 2111293 - | transcription-repair coupling factor TERM 1992 2112769 - 2112793 + g 73 -13.5 -2.70932 | opp_overlap 2112768 2112786 CTGTTCGCAGAGCAG GGTGGTCGGGC ACA GCACGGCCACC TGCTTGCCGCCGGCC TERM 1993 2114398 - 2114360 - G 71 -9.3 -3.72893 | TAGGCGGCCAGGAAA GCCGGCGGCGCCAGCCG ATAGA CGGCCGTGGTGGCCGGC ACGAGCAGGATGTCC TERM 1994 2114829 - 2114868 + r 75 -7.3 -4.30576 | gap 1, overlap 2114831 CATGATCGGAATAGC TTG-CTGCCCTGGAGG CCCTGGTCC CTTCCAGGGCAGATAA TTTTGCTGATCAGGG Daro_1966 2115429 - 2114878 - | hypothetical protein TERM 1995 2115131 - 2115162 + g 78 -5 -4.74132 | gap 1, overlap 2115108 2115134 TTTCTGGCCGCCAGG GTTGCTGCATCTCGC TTG GCGCG-TGCAGCTTC TTTTTCCTGGCGTAT TERM 1996 2115134 - 2115159 + g 84 -9.7 -4.47707 | gap 1, overlap 2115108 2115131 CTGGCCGCCAGGGTT GCTGCATCTCGC TTG GCGCG-TGCAGC TTCTTTTTCCTGGCG TERM 1997 2116730 - 2116711 - g 79 -12.2 -3.51934 | overlap 2116709 CTGGGCCTACAAACA CATCCTCG GCTT CGAGGATG GCGACAAGGTTTTCC Daro_1967 2115674 - 2117323 + | UDP-glucose/GDP-mannose dehydrogenase TERM 1998 2117350 - 2117367 + T 100 -12.7 -5.28826 | opp_overlap 2117350 CGTGCTTGATGAAAA GTCCCCG AGTT CGGGGAC TTTTTTGTGAAATTT TERM 1999 2117367 - 2117350 - T 95 -12.7 -4.25104 | opp_overlap 2117350 CGTGCTTGATGAAAA GTCCCCG AGTT CGGGGAC TTTTTTGTGAAATTT TERM 2000 2117662 - 2117700 + T 81 -13.2 -2.7535 | overlap 2117657 2117660 GGTTTGGGTGACCGG CGCGTCAATATTGAGCGG CGG CTGTTCAATCTCGACGCG TGCTGTGTTGAGGAA Daro_1968 2118658 - 2118065 - | hypothetical protein Daro_1969 2119767 - 2118655 - | radical SAM family protein Daro_1970 2120294 - 2119752 - | AMMECR1 TERM 2001 2119815 - 2119830 + g 93 -11.8 -4.42238 | GGGGCCCCAGTAGTC GGCCGG TAAT CCGGCC TTTTGCTTAAGGTGG Daro_1971 2121090 - 2120287 - | hypothetical protein Daro_1972 2122357 - 2121101 - | MgtC/SapB transporter TERM 2002 2121254 - 2121268 + g 76 -5.6 -4.62471 | overlap 2121255 GACGGCGATCACGGC ATCGCC ACT GGCGAC TTTTTCCAGATTGAA Daro_1973 2122399 - 2123085 + | 4-diphosphocytidyl-2C-methyl-D-erythritol synthase ispF 2123082 - 2123564 + | 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase TERM 2003 2123634 - 2123679 + G 85 -12.6 -3.72576 | gap 1 GTGGCCGTCGGCCGA GGTGGCCGACCGCCTCGCC GATATGGCG GGCAAGGCGGT-GGCCAGC TTTGGTGGGCGGGCC TERM 2004 2123988 - 2124003 + G 73 -10.4 -3.61398 | opp_overlap 2123988 2123987 GCTGGTTCGCAAAAT TCCGGC GAGT GCCGGA TTGTTGGAAAACCAG Daro_1975 2123554 - 2124135 + | 2',5' RNA ligase TERM 2005 2124355 - 2124375 + G 93 -14.7 -3.91352 | GCTATTGATTGAGTC CGCTGGCCG GGA TGGCCAGCG TTTACTTGGCGCTCT TERM 2006 2124754 - 2124766 + G 73 -4.7 -4.66833 | TGAACAGATCGATCA GGGGG TTG CCCGC TTTTTCCAGTTGGCC TERM 2007 2127032 - 2127013 - g 71 -7.1 -4.2828 | overlap 2127014 CGGGATCGATGAAAA CGGCCAG ATCGTG CTGGCCA ATGATGCCGCGCTTC Daro_1976 2124344 - 2127235 + | PAS:GGDEF TERM 2008 2127253 - 2127239 - g 70 -4.2 -4.56133 | overlap 2127240 CTTGAACAATGAAAA TCAAGG AAA CCTTGC CCATCAGCGATGTTT Daro_1977 2127232 - 2127552 + | hypothetical protein Daro_1978 2127549 - 2128391 + | HDIG Daro_1979 2129682 - 2128381 - | sensor histidine kinase TERM 2009 2129550 - 2129564 + g 74 -11.4 -3.53224 | opp_overlap 2129537 GATTGACGGCCGAAG CCGCCA ACT TGGCGG TTTCCCGGGCGCGTG ompR 2130419 - 2129688 - | osmolarity response regulator TERM 2010 2129886 - 2129900 + g 70 -10 -3.53012 | AAGCGGCTGGCGCGG GTGCTG GAG CAGCAC TTTCAGCACGGCAAA TERM 2011 2131085 - 2131102 + G 73 -10.5 -3.57561 | GATGCTATTGCCTTC GGCGTCG GCCC CGGCGCC TTTACCGGCTTGCGC Daro_1981 2130902 - 2131591 + | peptidase M22, glycoprotease TERM 2012 2131995 - 2132026 + G 70 -5 -4.56597 | overlap 2131998 CCGCAAGGGCTATTA TCCGGCAGTGCTCG GGCG CGAGGATGGCCTGA TTTTTGACAAGGAAC Daro_1982 2131588 - 2132049 + | SSU ribosomal protein S18P alanine acetyltransferase Daro_1983 2132046 - 2132828 + | Phage SPO1 DNA polymerase-related protein Daro_1984 2134097 - 2132832 - | hypothetical protein Daro_1985 2134357 - 2135259 + | regulatory protein, LysR:LysR, substrate-binding Daro_1986 2135256 - 2136368 + | alanine racemase region Daro_1987 2136368 - 2137729 + | DNA repair protein RadA Daro_1988 2137756 - 2139843 + | diguanylate cyclase/phosphodiesterase TERM 2013 2139912 - 2139944 + G 88 -14.2 -3.61398 | gap 1 CTTTTTGCGGCGCTG GCC-ATCGCCGTCGC TGCC GTGACGGCGGTCGGC TTCTTCGCCGACCGA Daro_1989 2139840 - 2142323 + | hypothetical protein Daro_1990 2142718 - 2142320 - | sensor histidine kinase Daro_1991 2142770 - 2143201 + | hypothetical protein Daro_1992 2143194 - 2143781 + | OmpA/MotB Daro_1993 2145894 - 2143768 - | CHASE2:stage II sporulation E TERM 2014 2144687 - 2144675 - G 85 -2.6 -5.40072 | CGTCCGGCAAAAAAA GCGA GGTAG CCGC CGGCCAGGAGAAACA TERM 2015 2144748 - 2144720 - G 95 -12.5 -4.22338 | gap 1 ATTAGAACGGTAAAA CTCAGGGCCGCG TAGCGT CGC-GCCCTGAG CAACGGGATAGTGCC Daro_1994 2146853 - 2145891 - | metallo-beta-lactamase family protein TERM 2016 2146194 - 2146177 - G 90 -4.9 -5.40072 | gap 1, overlap 2146181 GCCTTGGCAAAAAAA GCAACGAA GGC TTCGT-GC TCACCTGGGTTGTCG Daro_1995 2147197 - 2146850 - | anti-anti-sigma regulatory factor, SpoIIAA TERM 2017 2148572 - 2148551 - g 76 -13 -3.32294 | opp_overlap 2148553, overlap 2148541 GGAAATGCGCGACAA GACGCCGG GCTTCA CCGGCGTC GTCTCCGATCTCGGC Daro_1996 2147274 - 2149496 + | radical SAM family protein Daro_1997 2149519 - 2149908 + | hypothetical protein TERM 2018 2149958 - 2150009 + F 70 -7.2 -4.08692 | gap 1 ATTGATAACGATTGC CGGGATGGCCTGCCGGGTGATCGAG CTG CTTGGTCATC-GTCTGGCAATCCGG TTTTGCCAGCCCTTC TERM 2019 2150022 - 2150046 + F 95 -14.9 -3.25169 | overlap 2150014 2150023 CGGTTTTGCCAGCCC TTCGGGCCGCC AGT GGCGGCCCGGC TTGCTAACTTGTTGC TERM 2020 2150023 - 2150045 + F 100 -18.4 -2.54619 | overlap 2150022 2150014 GGTTTTGCCAGCCCT TCGGGCCGCC AGT GGCGGCCCGG CTTGCTAACTTGTTG TERM 2021 2150194 - 2150209 + F 74 -3.2 -4.88736 | GTGCTGTAATTTTTG CGTTCT TTCT AGCACG TTTTTCTGCCTGATC TERM 2022 2150478 - 2150461 - g 76 -5.5 -4.60889 | opp_overlap 2150461 2150460 2150463, overlap 2150451 2150464 AATGACCTGGAAAAA GAGCGTG GCAT CACGATC CTTTCCAAGAACACT TERM 2023 2150677 - 2150655 - g 95 -16.2 -3.71848 | opp_overlap 2150652 2150649 TTTCGTGACCAAGAA GGCGCTGGCC CTC GGCCTGCGCC CGATCGTTCTGGTCA Daro_1998 2150308 - 2152149 + | GTP-binding protein TypA TERM 2024 2152202 - 2152237 + T 79 -12.8 -3.0054 | gap 1, opp_overlap 2152210 2152211, overlap 2152211 GACTTGACGAGTGAA C-ATAAAAAGGCGGCCC GGT GGGTCGCTTTTTTATTG ATTGTTTCCGTATTT TERM 2025 2152228 - 2152210 - T 86 -5.8 -5.10767 | opp_overlap 2152202 2152211, overlap 2152211 GAGTGAACATAAAAA GGCGGCCC GGT GGGTCGCT TTTTTATTGATTGTT TERM 2026 2152227 - 2152211 - T 73 -9.3 -3.65375 | opp_overlap 2152211 2152202, overlap 2152210 AGTGAACATAAAAAG GCGGCCC GGT GGGTCGC TTTTTTATTGATTGT TERM 2027 2152211 - 2152227 + T 100 -11.5 -5.57396 | opp_overlap 2152210 2152211, overlap 2152202 AGTGAACATAAAAAG GCGGCCC GGT GGGTCGC TTTTTTATTGATTGT TERM 2028 2152362 - 2152411 + T 100 -17.1 -2.79183 | GAGGAATTGGATGCG GGCTGCTGATTGCCCAAGGTGCT ACCG AGCGCCAGGGGAAATCAGCCGCC TGTCATCGACATAAA Daro_1999 2153476 - 2152403 - | radical SAM:molybdenum cofactor synthesis C-terminal TERM 2029 2153587 - 2153577 - R 88 -5.4 -5.25893 | AGAGAGATCAAAAAA CGAA AAG TTCG CAGGTTTTTCCTGAG Daro_2000 2153979 - 2153665 - | hypothetical protein TERM 2030 2154276 - 2154243 - H 100 -14.7 -4.61231 | opp_overlap 2154250, overlap 2154250 TTACAGGCCGAAAAA GCAAAAAGCCCAACC GACA GGCTGGGCTTTCTAC TATTAAATTCTGGCT TERM 2031 2154269 - 2154250 - H 100 -11.4 -5.18355 | opp_overlap 2154250, overlap 2154243 CCGAAAAAGCAAAAA GCCCAACC GACA GGCTGGGC TTTCTACTATTAAAT TERM 2032 2154250 - 2154269 + H 81 -9.2 -4.06786 | opp_overlap 2154243 2154250 CCGAAAAAGCAAAAA GCCCAACC GACA GGCTGGGC TTTCTACTATTAAAT TERM 2033 2154485 - 2154466 - g 73 -4.2 -4.66609 | gap 1, overlap 2154467 2154468 TAGTCTACGCAAAAA CGCC-CGTC GGT GACGAGGCT GTGCGCCAGAGTACG TERM 2034 2154787 - 2154799 + G 77 -3.3 -4.93696 | overlap 2154770 2154770 2154792 2154797 CCATGGCTGGGCCAG CCTCT GGA AGTGG TTTTTCCTCTTTCGG TERM 2035 2154884 - 2154839 - g 100 -16.8 -4.07568 | overlap 2154840 2154864 2154865 2154868 TCTTCCCGCTCAAAA CCGGGCAACCCCAGAGGCGC TCAAAC GCACCTCGGGGGTTGCCCCC GAGCAGGAGCTAGAG TERM 2036 2154883 - 2154840 - g 95 -20.3 -3.04398 | overlap 2154839 2154864 2154865 2154868 CTTCCCGCTCAAAAC CGGGCAACCCCAGAGGCGC TCAAAC GCACCTCGGGGGTTGCCCC CGAGCAGGAGCTAGA TERM 2037 2156078 - 2156088 + G 72 -2.4 -4.77157 | ATCGACAGTGCACGC CCCG GTT CGGA TTTTTGGTACGTTGC Daro_2001 2154438 - 2156132 + | hypothetical protein TERM 2038 2156137 - 2156158 + T 100 -15.9 -4.59773 | opp_overlap 2156137 CCCAAAAATAAAAAA GGGCGGAAC CTTG GTTCCGCCC TTTTTGCCAATCAAC TERM 2039 2156158 - 2156137 - T 100 -15.9 -5.93252 | opp_overlap 2156137 CCCAAAAATAAAAAA GGGCGGAAC CTTG GTTCCGCCC TTTTTGCCAATCAAC Daro_2002 2157392 - 2156184 - | aromatic amino acid aminotransferase TERM 2040 2159469 - 2159452 - g 73 -4.7 -4.66833 | CTGGAATTCGAAAAA GCGGCGG CGGC CCGCGAC GATCTGTTCCGACTC Daro_2003 2157469 - 2159541 + | excinuclease ABC subunit B Daro_2004 2159538 - 2160020 + | low molecular weight phosphotyrosine protein phosphatase TERM 2041 2160064 - 2160035 - T 100 -15.1 -4.28548 | opp_overlap 2160040, overlap 2160040 ATCGATCCACGAAAA CAAAAGGGGCACC CGAG GGTGCCCCTTTTT ATTGGTTGACTCAGC TERM 2042 2160040 - 2160059 + T 100 -15 -5.1963 | opp_overlap 2160040 2160035 TCCACGAAAACAAAA GGGGCACC CGAG GGTGCCCC TTTTTATTGGTTGAC TERM 2043 2160059 - 2160040 - T 100 -15 -5.13722 | opp_overlap 2160040, overlap 2160035 TCCACGAAAACAAAA GGGGCACC CGAG GGTGCCCC TTTTTATTGGTTGAC Daro_2005 2162694 - 2160082 - | ribonuclease E TERM 2044 2160687 - 2160697 + g 71 -6.8 -4.18164 | CGGCGGCTGCTGTTT GCTG AAC CAGC TTGTTTTCAACCGTT TERM 2045 2160920 - 2160940 + g 76 -6.7 -4.57569 | overlap 2160921 CCATCGCGACGGCCA TCCCCGCGA CCT TCGCGCGGC TTTTTGGCGGGCTCC TERM 2046 2162111 - 2162087 - G 73 -9.1 -3.918 | overlap 2162061 AGATAAATCAGGAAA GCGCCGCTCTG TTG CTGGGCGGCAC CGTCAATGGCGGTCC TERM 2047 2163904 - 2163951 + G 78 -6.9 -4.60487 | gap 1, opp_overlap 2163900 2163899, overlap 2163905 2163908 CGCTAAACAAGGCGC TCAAGCGCGATGGCCTGAAGCG AATGG CGCTGCATGCC-TGGCGCATGG TTTTTCAACATCCTC TERM 2048 2164030 - 2164055 + G 95 -11.9 -4.46212 | gap 1, overlap 2164054 GAAACTACATTGCTG CTCTCGACGGGC AAA GCCC-TCGGGAG TTTTCTGCTGAAAAC Daro_2006 2163093 - 2164097 + | ribosomal large subunit pseudouridine synthase C Daro_2008 2164722 - 2165081 + | Rieske (2Fe-2S) region TERM 2049 2165189 - 2165201 + G 80 -4.1 -5.06016 | overlap 2165184 2165190 GCTGGGGTATTGCCT TCAAG GCG CTTGG TTTTGTTTATCTCCT TERM 2050 2165937 - 2165914 - g 88 -6.8 -4.92314 | ATCAAGGCAGAAAAA GTCCTTGA TTACTCGG TCAAGGAC AATATTGCCGAACGC Daro_2009 2165074 - 2166036 + | peptidase S49 TERM 2051 2166064 - 2166093 + T 100 -15.7 -5.17576 | opp_overlap 2166062, overlap 2166063 CAATAGAAAAACTGT CGGACGCCGCTCG ATTT CGGGCGGCGTTTG TTTTTTCCATTGCTG Daro_2010 2166747 - 2166040 - | uroporphyrin-III C/tetrapyrrole methyltransferase Daro_2011 2167328 - 2166747 - | Maf-like protein TERM 2052 2167149 - 2167170 + g 73 -9.3 -3.90112 | opp_overlap 2167134 CAGGGCGTCGGGATA GGCTTGGGC AGCC GCCCTGGCC TTTGCTTCAGAAAGG TERM 2053 2167273 - 2167258 - G 71 -6.8 -4.19238 | gap 1 TTGGCAACGTCAAAA GCCAGCC CGA GGC-GGC TCAATAGTTCCCGGC Daro_2012 2167365 - 2167928 + | hypothetical protein rpmF 2167948 - 2168127 + | 50S ribosomal protein L32 TERM 2054 2168171 - 2168140 - f 100 -15.2 -3.3482 | gap 1, opp_overlap 2168141, overlap 2168141 TAATCGTTCAACGAA GGGCAGGCTGGCTCA TCG TGAGCC-GCCTGCCT TTTCTTTTGCCTTAT TERM 2055 2168170 - 2168141 - f 100 -18.7 -2.60571 | gap 1, opp_overlap 2168141, overlap 2168140 AATCGTTCAACGAAG GGCAGGCTGGCTCA TCG TGAGCC-GCCTGCC TTTTCTTTTGCCTTA TERM 2056 2168141 - 2168170 + F 100 -18.7 -5.13343 | gap 1, opp_overlap 2168140 2168141 AATCGTTCAACGAAG GGCAGGCTGGCTCA TCG TGAGCC-GCCTGCC TTTTCTTTTGCCTTA Daro_2014 2168185 - 2169204 + | putative glycerol-3-phosphate acyltransferase PlsX TERM 2057 2169510 - 2169499 - g 70 -4.4 -4.45664 | CTAATCCAAGGAAAA CTTG GCAA CAAG GGGGCTGCAGCCTTT Daro_2015 2169205 - 2170164 + | 3-oxoacyl-(acyl carrier protein) synthase III Daro_2016 2170181 - 2171107 + | [Acyl-carrier-protein] S-malonyltransferase Daro_2017 2171104 - 2171850 + | 3-oxoacyl-[acyl-carrier-protein] reductase TERM 2058 2171893 - 2171915 + F 76 -4 -4.9218 | overlap 2171894 ATCGTAACGTTTTTT TTCGTACCCC TGA GGGGAAGGAG TTTTTCTAATGGATA Daro_2018 2171924 - 2172160 + | Acyl carrier protein (ACP) TERM 2059 2172178 - 2172214 + F 81 -9.3 -4.06502 | opp_overlap 2172181 2172186, overlap 2172182 2172187 CAATTCCGGTTTGAA CCAGGCAAGGCCGGCCT CAA AGGCCGGCTTTGCTACA TTTGCTTTCGGAGTG TERM 2060 2172211 - 2172181 - f 95 -15.4 -2.70932 | opp_overlap 2172178 2172182 2172187, overlap 2172186 TTCCGGTTTGAACCA GGCAAGGCCGGCCT CAA AGGCCGGCTTTGCT ACATTTGCTTTCGGA TERM 2061 2172182 - 2172210 + F 100 -21.1 -2.73676 | opp_overlap 2172181 2172186, overlap 2172178 2172187 TCCGGTTTGAACCAG GCAAGGCCGGCCT CAA AGGCCGGCTTTGC TACATTTGCTTTCGG TERM 2062 2172206 - 2172186 - f 81 -12.5 -3.13164 | opp_overlap 2172182 2172178 2172187, overlap 2172181 GTTTGAACCAGGCAA GGCCGGCCT CAA AGGCCGGCT TTGCTACATTTGCTT TERM 2063 2172187 - 2172205 + F 100 -16 -3.82499 | opp_overlap 2172186 2172181, overlap 2172182 2172178 TTTGAACCAGGCAAG GCCGGCCT CAA AGGCCGGC TTTGCTACATTTGCT Daro_2019 2172234 - 2173469 + | 3-oxoacyl-(acyl carrier protein) synthase II TERM 2064 2173529 - 2173496 - f 81 -9 -4.04394 | gap 2, opp_overlap 2173496 CCGAAAGGAATCAAA CGGTGCAGTTTCCGAC CATC ATCGGA--CTGCACCG TTCTCGCTTTCTGGA TERM 2065 2173606 - 2173628 + G 80 -9.9 -4.0251 | GTGTTACCGTATTCT GCGATCATC CGATT GGTGATCGC TTTGCTTATCGTGGT Daro_2020 2173498 - 2173935 + | hypothetical protein Daro_2021 2175487 - 2173910 - | L-aspartate oxidase Daro_2022 2175660 - 2176259 + | RNA polymerase sigma factor RpoE TERM 2066 2176382 - 2176367 - g 76 -6 -4.72272 | overlap 2176369 CGGTGTCATGAAAAA GGCGGC TGTG GCGGCC AGCACCTAACCCAGA Daro_2023 2176253 - 2176696 + | positive regulator of sigma(E), RseC/MucC Daro_2024 2176721 - 2178142 + | peptidase S1C, Do Daro_2025 2178135 - 2178377 + | glutaredoxin 2 TERM 2067 2178420 - 2178403 - f 76 -10.5 -3.36823 | opp_overlap 2178403 CTTCTGAAAAGGGAA GGGCGCC GGAC AGCGCCC TTTTTTACTGGCACC TERM 2068 2178403 - 2178420 + F 100 -9.8 -5.14563 | opp_overlap 2178403 CTTCTGAAAAGGGAA GGGCGC CGGACA GCGCCC TTTTTTACTGGCACC Daro_2026 2178437 - 2180227 + | GTP-binding protein LepA Daro_2027 2180236 - 2181024 + | signal peptidase I TERM 2069 2181058 - 2181044 - g 81 -4.2 -4.91573 | overlap 2181045 AAAAGAGATGAAAAA TCAACG TGG CGTTGC GCTCTCCGGGCTTTT TERM 2070 2181059 - 2181069 + G 78 -4.6 -4.78237 | overlap 2181062 TCAACGTGGCGTTGC GCTC TCC GGGC TTTTGTTCTGGAGTG Daro_2028 2181036 - 2181386 + | transmembrane protein Daro_2029 2181393 - 2182061 + | ribonuclease III TERM 2071 2182078 - 2182068 - g 88 -2.4 -5.52384 | CTCGCATGAAAAAAA TCCG TTC CGGT TATATCGCCATCGTT era 2182058 - 2182942 + | GTP-binding protein Era recO 2182939 - 2183667 + | DNA repair protein RecO Daro_2032 2183664 - 2184419 + | pyridoxal phosphate biosynthetic protein PdxJ Daro_2033 2184416 - 2184793 + | Holo-acyl carrier protein synthase:phosphopantethiene-protein transferase Daro_2034 2184790 - 2185809 + | beta-hexosaminidase TERM 2072 2185842 - 2185812 - T 78 -10.5 -3.54543 | gap 1, opp_overlap 2185816, overlap 2185813 2185816 ATTGATGGCCTGAAA TGCATTCGGGCAGC CGAA GCTGCCCGAAT-CT TGCACTGCTGAAAAA TERM 2073 2185841 - 2185813 - T 85 -14 -2.72511 | gap 1, opp_overlap 2185816, overlap 2185812 2185816 TTGATGGCCTGAAAT GCATTCGGGCAGC CGAA GCTGCCCGAAT-C TTGCACTGCTGAAAA TERM 2074 2185816 - 2185839 + T 100 -16.8 -3.07043 | opp_overlap 2185816 2185813 2185812 ATGGCCTGAAATGCA TTCGGGCAGC CGAA GCTGCCCGAA TCTTGCACTGCTGAA TERM 2075 2185839 - 2185816 - T 100 -16.8 -2.64274 | opp_overlap 2185816, overlap 2185813 2185812 ATGGCCTGAAATGCA TTCGGGCAGC CGAA GCTGCCCGAA TCTTGCACTGCTGAA Daro_2035 2186422 - 2185865 - | elongation factor P TERM 2076 2186100 - 2186086 - G 78 -2.8 -5.0538 | overlap 2186087 TGCCATTGTAAAAAA CGACTT CGC AAGCCA GGCCATCTTCCAGAT Daro_2036 2187542 - 2186460 - | hypothetical protein Daro_2037 2187567 - 2188214 + | uracil-DNA glycosylase superfamily protein TERM 2077 2189491 - 2189474 - g 74 -3.3 -4.74801 | opp_overlap 2189476, overlap 2189476 2189477 CAATCGCATGAAAAA GAGCGAC TATC GCCGCTT CAATATCCGCGACAT Daro_2038 2188218 - 2190029 + | excinuclease ABC subunit C Daro_2039 2190033 - 2190611 + | CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase TERM 2078 2190972 - 2190994 + F 100 -13.5 -5.21709 | opp_overlap 2190972 CTCCAAATTCAAAAA GGGAAAGCG CCGGT CGCTTTCCC TTTTTTCATGTCGGG TERM 2079 2190994 - 2190972 - f 100 -13.5 -4.81249 | opp_overlap 2190972 CTCCAAATTCAAAAA GGGAAAGCG CCGGT CGCTTTCCC TTTTTTCATGTCGGG TERM 2080 2191156 - 2191171 + F 100 -7.5 -5.71638 | opp_overlap 2191156 AGCAAGTCCAGAGAA CCCGC CTAAGT GCGGG TTTTTTTGCTTATTG Daro_2040 2192015 - 2192473 + | hypothetical protein TERM 2081 2192461 - 2192476 + T 90 -4.7 -5.36441 | GGCAGTAAAGGAGGA GGATC TGAATT GATCC TTTTTTCTGTGCAGA Daro_2041 2193925 - 2192900 - | transposase IS116/IS110/IS902 TERM 2082 2193857 - 2193847 - G 85 -6.8 -4.82901 | overlap 2193849 TTGGCTTGATAAAAA TGGC TTT GCCA TACTGGTCAACGGCA Daro_2042 2194503 - 2194045 - | hypothetical protein TERM 2083 2194341 - 2194354 + g 76 -5.3 -4.61747 | overlap 2194342 CAGTAGACGCATCCA GGAAA AGAT TTTCC TTTTCTACTTCTTCC TERM 2084 2195111 - 2195100 - g 76 -7.2 -4.4891 | overlap 2195101 2195102 TTCACCACCAGAAAA GGCG GCAC CGCC GAACTGGCGATTACC Daro_2043 2194899 - 2196218 + | cyclic nucleotide-binding Daro_2044 2196224 - 2196544 + | hypothetical protein TERM 2085 2197314 - 2197300 - g 72 -2.1 -4.77165 | gap 1 CGCTGTACAAGAAAA GCACGA TCTA TCG-GC GCGTCGAGCGCCGCA TERM 2086 2197357 - 2197369 + G 82 -9.1 -4.36914 | GTCTGGGCGGAATCG CCGAC TAC GTCGG TTTTCTCCAGACCAA TERM 2087 2198192 - 2198205 + G 71 -6.7 -4.25104 | CGTGTTGACCAATGC GGATG GGGA CATCC TTTTCATCAGCGGGC Daro_2045 2196552 - 2199158 + | CheB methylesterase:MCP methyltransferase, CheR-type Daro_2046 2207939 - 2199141 - | putative carbohydrate binding:glycosyltransferase 36:glycosyltransferase 36 associated TERM 2088 2203333 - 2203357 + g 76 -12.9 -3.35867 | opp_overlap 2203328 2203327 TCGAAGAAACCGTAT TTGCCGACGAA GCC TTCGTCGGCCA TTCGTTGCAGGTTGA TERM 2089 2205273 - 2205244 - G 70 -9.9 -3.53811 | gap 1, opp_overlap 2205258 2205258 CCTAGCTGCCGGAAA TGGCGCAG-GGCCG AGC CGGCCACGGCGGCA AAGTGCTGCCGGAGC TERM 2090 2207994 - 2207968 - R 100 -13.8 -5.72622 | opp_overlap 2207968 TCCAGAAACAAAAAA TCTCACGATGCA TGG CGCACCGTGAGA TTGACTACTTCAATC TERM 2091 2207968 - 2207994 + r 74 -10.9 -3.1364 | opp_overlap 2207968 TCCAGAAACAAAAAA TCTCACGATGC ATGGC GCACCGTGAGA TTGACTACTTCAATC Daro_2047 2208378 - 2208064 - | transport-associated protein Daro_2048 2210998 - 2208515 - | response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) TERM 2092 2209661 - 2209626 - G 75 -14.1 -2.84812 | gap 1 ATGCAGACGATCAGA CGCTCGGCGACCTGTT GCAGT AACTGGTCGCCGA-CG GCATGCCCAAGGGAG TERM 2093 2209890 - 2209876 - G 77 -7.8 -4.40561 | opp_overlap 2209879, overlap 2209873 2209879 CGTCGTGAAAAACAA TGACCG CAC CGGCCA CCTGGCCGTCCCGGT Daro_2049 2211324 - 2211037 - | hypothetical protein TERM 2094 2211123 - 2211142 + g 74 -6.4 -4.30576 | opp_overlap 2211126, overlap 2211126 GTCGTATCCACTCCA GAAGCATG GCGG CATGCTCC TTTTCCTCATCGCGG TERM 2095 2211400 - 2211377 - R 70 -10.2 -3.21099 | opp_overlap 2211399, overlap 2211389 2211393 GCGGCGGATGATCAA GGCGCCGATG AAGA CACCGGCGGC CGCGGCGATGCCGGC Daro_2050 2211709 - 2211359 - | hypothetical protein TERM 2096 2211539 - 2211565 + g 70 -10.8 -3.54935 | opp_overlap 2211543, overlap 2211528 2211540 2211543 GCTGGCGTCCTTGAG CAGATGGTCGGC CTT GCCGACCATCCC TTTGAACAGGCTTTC TERM 2097 2211540 - 2211564 + g 77 -14.3 -2.7264 | opp_overlap 2211543, overlap 2211539 2211528 2211543 CTGGCGTCCTTGAGC AGATGGTCGGC CTT GCCGACCATCC CTTTGAACAGGCTTT TERM 2098 2211543 - 2211561 + g 76 -14.6 -2.64155 | opp_overlap 2211543, overlap 2211540 2211539 2211528 GCGTCCTTGAGCAGA TGGTCGGC CTT GCCGACCA TCCCTTTGAACAGGC TERM 2099 2211561 - 2211543 - G 77 -14.6 -2.78384 | opp_overlap 2211543 2211540 2211539 2211528 GCGTCCTTGAGCAGA TGGTCGGC CTT GCCGACCA TCCCTTTGAACAGGC Daro_2051 2211831 - 2211989 + | hypothetical protein Daro_2052 2212019 - 2212438 + | transport-associated protein TERM 2100 2212534 - 2212504 - g 100 -9.6 -5.46276 | AATATAGAGAAAAAA TGGGCGCACAACTC AAG GAGTGGAGCGCTCA GGTCAATCTGCTGGA Daro_2053 2212473 - 2212763 + | hypothetical protein TERM 2101 2212787 - 2212770 - f 86 -12.7 -3.55145 | opp_overlap 2212770 AAGCAGTAATCAGAA TGGCGCC TGAG GGCGCCA TTTCTTTGTCATGTA TERM 2102 2212770 - 2212787 + F 100 -12.7 -4.60949 | opp_overlap 2212770 AAGCAGTAATCAGAA TGGCGCC TGAG GGCGCCA TTTCTTTGTCATGTA TERM 2103 2213623 - 2213608 - g 78 -10.4 -3.97368 | CCCCCAACGGAGAAA CGCCGA GCCT TCGGCG GCACCGCAACGCCCC Daro_2054 2212958 - 2213947 + | hypothetical protein Daro_2056 2214970 - 2214821 - | hypothetical protein TERM 2104 2215082 - 2215108 + r 86 -12.3 -3.494 | opp_overlap 2215055 GCCACCCTCGCCCCG CTCATGCCTGC CGGTA GCAGGCACGAG TTATATCAGCGCTTG Daro_2057 2215677 - 2215114 - | twin-arginine translocation pathway signal Daro_2058 2215996 - 2216322 + | heat shock protein DnaJ, N-terminal Daro_2059 2217482 - 2216451 - | phospholipase/carboxylesterase Daro_2060 2217694 - 2217879 + | CsbD-like TERM 2105 2217913 - 2217890 - f 100 -13.9 -3.6501 | opp_overlap 2217888 2217886 AATAAGCATTCGAAA CCTTGGCCG GCACTA CGGCCAAGG CGCTCTTTCTTCGCA TERM 2106 2218504 - 2218487 - g 78 -6.9 -4.66163 | ACCGCGATGGAAAAA GCCTCTG GCGC CAGGGGC TGGATGCGGCCGGTG Daro_2061 2218240 - 2218971 + | hypothetical protein Daro_2062 2220093 - 2218993 - | transaldolase Daro_2063 2222456 - 2220090 - | putative phosphoketolase TERM 2107 2220583 - 2220621 + g 73 -13.2 -2.71011 | gap 2 AGCGTCGGTACATCC CCGGCCGAGGCGAGCACG ATGTC CG-GTTCGCC-CGGCTGG TCGTTGCAAGCCCAT Daro_2064 2222798 - 2222478 - | MerR family transcriptional regulator TERM 2108 2222643 - 2222630 - G 70 -4.5 -4.56597 | gap 1, overlap 2222631 2222634 GGGTGCCGGTAAAAA GCCAGC GAT GC-GGC TCCCGGCCGCTGGGC TERM 2109 2222668 - 2222692 + g 70 -10 -3.53012 | CTGGGCGTGAGTACC CCCTCGTCGA CCAGT TCGACGATGG TTTCGACGCGCACGG Daro_2065 2223748 - 2222801 - | heat shock protein DnaJ, N-terminal:chaperone DnaJ, C-terminal TERM 2110 2223454 - 2223434 - G 70 -3.1 -4.64598 | overlap 2223436 CAAGGATTCGAAAAA GTCGCTGAA ATC CTCGGCGCC CCTGCCGTTCGCGCC Daro_2066 2224125 - 2224577 + | hypothetical protein Daro_2067 2224599 - 2225024 + | OsmC-like protein Daro_2068 2225238 - 2226866 + | aldehyde dehydrogenase Daro_2069 2226941 - 2228380 + | 6-phosphogluconate dehydrogenase TERM 2111 2228598 - 2228576 - g 78 -9.8 -3.90922 | opp_overlap 2228576 AGCGCCTGGAAACAA GCGATCCAGC ACT GCTCGACCGC TTTCTCCAGCGCCTC Daro_2070 2228377 - 2229840 + | glucose-6-phosphate 1-dehydrogenase Daro_2071 2229840 - 2230538 + | 6-phosphogluconolactonase Daro_2072 2231858 - 2230509 - | Sodium/hydrogen exchanger TERM 2112 2231841 - 2231823 - G 74 -12.4 -3.21416 | CATGGTGATCAGCAA GGCGCCGA CGA TCAGCGCC CAGACGGAAAAAGAC TERM 2113 2232620 - 2232593 - g 76 -6.2 -4.6902 | overlap 2232594 GTACAACTGGAAAAA TCGGCTCGCC GGGCAAAG GGCGAACCGG TCTGGAACTAACAAC Daro_2073 2232053 - 2232631 + | NAD(P)H dehydrogenase (quinone):NADPH-dependent FMN reductase TERM 2114 2232809 - 2232771 - g 70 -3.8 -4.58283 | overlap 2232778 CAAGGGGCGGAAAAA GTGGAAACCATTGTCG ATGGTGA CGACGATGGCATCGAC AGCATCCGGCGCTAT TERM 2115 2233321 - 2233350 + G 71 -8.5 -4.07568 | overlap 2233322 TACGCGATGCACGCC TGGCCGCTGCCAT CGTC ATGGGAGCGGACG TTTTGCCACCGCCAG Daro_2074 2232657 - 2233676 + | hypothetical protein Daro_2075 2234242 - 2233835 - | cupin region Daro_2076 2234640 - 2234317 - | transport-associated protein Daro_2077 2235555 - 2235947 + | triple helix repeat-containing collagen Daro_2078 2238839 - 2236281 - | ATPase, E1-E2 type:magnesium-translocating P-type ATPase TERM 2116 2236838 - 2236828 - G 75 -8.2 -4.27474 | AAAGGCAGGAACAAA GCCG CAC CGGC CATGCTGAACATGTT Daro_2079 2239755 - 2238871 - | forkhead-associated TERM 2117 2239373 - 2239353 - G 78 -6.7 -4.67353 | CCAGCCAGGGAAAAA GCCTGGCCC GTC GGGGCACGC TGAGCAGGATCCGGC Daro_2080 2240012 - 2239779 - | hypothetical protein Daro_2081 2241565 - 2240138 - | phospholipase D/transphosphatidylase TERM 2118 2241351 - 2241366 + g 71 -6 -4.36914 | opp_overlap 2241322, overlap 2241326 CTGCTTTTCAGACTG GCGACG ATGG CGGCGC TTTTCTCGGGCGAAA TERM 2119 2241501 - 2241488 - G 71 -8.1 -4.08058 | overlap 2241465 AACGAACAGCAGAAA CGCTG ACGT CAGCG CCAGTCTCAAGTGCG TERM 2120 2241695 - 2241743 + G 78 -13.8 -3.16564 | GTTGCCCCGGTCGAG CCGGTGGCGCCAGTGCCACC ACTGGAGCC GGTGGCGCCGGTGTCACCCG TTGATCCAGTCGCAC TERM 2121 2241831 - 2241855 + G 83 -2.1 -5.24129 | gap 1, opp_overlap 2241836, overlap 2241831 2241834 GCACAGGCACGGTGA CC-ACAGTCG GTGTCA CGACGGTCGG TTTTTTGTCACAGGC Daro_2082 2241638 - 2241943 + | hypothetical protein TERM 2122 2242590 - 2242546 - T 80 -11.4 -3.31144 | gap 1 GCCCGAGTGCCACAA CCCGGCGATGGCGCGCAATAG TGAA CTCTTGC-CGCAACCGCTGGG GCCGACGATCAGCAA Daro_2084 2244300 - 2243827 - | hypothetical protein Daro_2085 2244746 - 2244309 - | hypothetical protein Daro_2086 2245029 - 2244775 - | hypothetical protein TERM 2123 2245033 - 2244999 - G 89 -11.5 -4.1673 | gap 2, opp_overlap 2244999 TAAGCCGGCAATAAA CG-GATG-GCCCGACCA TGC CGGCCGGGCGCATCGCG TTTGGTCACCGGCCC Daro_2087 2245264 - 2245049 - | osmotically inducible lipoprotein Daro_2088 2245929 - 2245318 - | hypothetical protein TERM 2124 2245962 - 2245978 + r 100 -13.7 -4.15222 | GTGATTCGTTTCGCC GCGGCAG GTG CTGCCGC TTTCTTCACCGGAAT Daro_2089 2246842 - 2246135 - | hypothetical protein TERM 2125 2246901 - 2246866 - R 79 -10.4 -3.81339 | gap 1, opp_overlap 2246866 2246868 2246877 GAGTCAGAACTGAAA CAGCGTCAACCCCAGCC CCA GGCTGGT-CTGCCGCTG GTTGTAGTCTAGCAG Daro_2090 2247885 - 2246854 - | phospholipase A1 TERM 2126 2247941 - 2247984 + r 76 -9.4 -3.76952 | overlap 2247935 CAAGGCTACGCCTTC CGGATCGGCGGCTCTGTGTG CTGG CGCACAGAGCCACCCGCGCG TTTCGATTACATGAA TERM 2127 2248128 - 2248146 + r 70 -11 -2.71731 | opp_overlap 2248109 CCTCGGTGGTTGGCG CTAGGTGG CAA CCACCTGG TGATTGGCGGATAGC Daro_2091 2248763 - 2248128 - | carbonic anhydrase TERM 2128 2248989 - 2248972 - H 75 -6.9 -4.43189 | overlap 2248962 AGCAACGGCAGAAAA CCGATCG CGAA CGGTCGG ATAGCCGGATTGAAC Daro_2092 2249163 - 2249579 + | hypothetical protein Daro_2093 2250313 - 2249600 - | putative two-component response-regulatory protein YehT TERM 2129 2249749 - 2249768 + g 76 -5.6 -4.63932 | CCAGGTACTGCCGGT GGCAACGC AATA GCGGTGTC TTTTCTTCCAGCGTG Daro_2094 2252027 - 2250294 - | GAF:ATP-binding region, ATPase-like:histidine kinase internal region:5TM Receptors of the LytS-YhcK type, transmembrane region Daro_2095 2252477 - 2254291 + | carbon starvation protein CstA Daro_2096 2254401 - 2256656 + | formate acetyltransferase Daro_2097 2256643 - 2257437 + | radical SAM family protein TERM 2130 2257551 - 2257515 - g 85 -5.8 -5.08088 | gap 1, overlap 2257516 AACTTGCAACAAAAA TTGGCCTG-GTTACCGG CACG CCGGTAACGCCTGCCAC CAATGAAGTCATCGC TERM 2131 2257727 - 2257706 - g 72 -2.2 -4.72986 | overlap 2257708 CATCTCGATGAAAAA TATGCCGC CAAGAC GCGACATC ACAAGATCATCGCCC Daro_2098 2257490 - 2258971 + | bifunctional enoyl-CoA hydratase/phosphate acetyltransferase Daro_2099 2258982 - 2260193 + | acetate kinase Daro_2100 2260275 - 2261225 + | formate/nitrite transporter Daro_2101 2261471 - 2262244 + | hypothetical protein TERM 2132 2262320 - 2262332 + G 73 -4.8 -4.7173 | TCGGCTACATCGGCA GCCA CACGT TGGC TTTTTCCGTCTCCTG TERM 2133 2264570 - 2264558 - g 95 -3.3 -5.60993 | overlap 2264559 TGTCGCAGAAAAAAA TGGTC GAC GACCT GCAACGCGCAGCGGG Daro_2102 2262241 - 2264598 + | hypothetical protein TERM 2134 2265226 - 2265214 - g 76 -6.9 -4.56597 | CGCCCGTGCCAAAAA CCAGC CCG GCCGG CAAGGAAGGCAATGG Daro_2103 2264601 - 2265245 + | hypothetical protein TERM 2135 2265766 - 2265789 + G 70 -12.4 -2.87881 | opp_overlap 2265770 CTGCGCAGCCTGCAA GTCATGCGCG ACAT CGCGCCTGAC TATCTGCAAGGATTC TERM 2136 2265867 - 2265855 - g 78 -10.5 -3.89346 | opp_overlap 2265857 CGCTGACCCGACAAA GCCGG CGA CCGGC CGTTCATCGAGTGGC Daro_2104 2265238 - 2265936 + | hypothetical protein Daro_2105 2268161 - 2266119 - | PAS TERM 2137 2266597 - 2266613 + g 86 -12.3 -3.86346 | overlap 2266596 ACAATTTCACGCAGG CCAGCCA AGC TGGCTGG TTTCTGCAAAACTGC TERM 2138 2267455 - 2267479 + g 70 -4.1 -4.64766 | TCAAAATCCAGTTCG TCCAGGGCGGC ATT GCCGGACTCGA TTTTTGAGATATCGA TERM 2139 2268361 - 2268380 + H 81 -5 -5.15969 | TGATTCCCTTTGCTA TCTGTCTT TCCA GAGGCAGA TTTTTTGCATTCGCG TERM 2140 2271588 - 2271557 - g 72 -13.8 -2.51471 | gap 1, opp_overlap 2271548, overlap 2271556 2271547 2271586 TATAACGGCACCAAT GCCTTCGTGAGCACC GGC GGTGC-CACGAATGC CAGCGCCGGAACGAT TERM 2141 2272460 - 2272443 - g 74 -11.3 -3.45023 | overlap 2272421 2272420 CCAGCAGCACCACAA CCAGCGT TGCC ACGCTGG TCCGCGCCCCGCTGG TERM 2142 2274009 - 2273982 - g 76 -10.5 -3.76224 | GGCTGACGTACCAAA TCGCCAGCGGC TCATTG GCCGCCGGTGA CAGCCTTGCCGGCAG Daro_2106 2268611 - 2274850 + | filamentous haemagglutinin, N-terminal Daro_2107 2274859 - 2276505 + | activation/secretion signal peptide protein Daro_2108 2278368 - 2276887 - | transposase IS4 TERM 2143 2278530 - 2278562 + r 95 -11.4 -4.3739 | gap 1, opp_overlap 2278533, overlap 2278533 TGGGGGCTCAATGAC AAATGGCCGGTGCTG AGTC CAG-ACCGGCCATTA TTTTGTGCGCACATA TERM 2144 2278533 - 2278559 + r 100 -13.1 -4.30995 | gap 1, opp_overlap 2278533, overlap 2278530 GGGCTCAATGACAAA TGGCCGGTGCTG AGTC CAG-ACCGGCCA TTATTTTGTGCGCAC TERM 2145 2278559 - 2278533 - R 100 -13.1 -4.05446 | gap 1, opp_overlap 2278533 2278530 GGGCTCAATGACAAA TGGCCGGTGCTG AGTC CAG-ACCGGCCA TTATTTTGTGCGCAC Daro_2109 2279437 - 2278886 - | OmpA/MotB TERM 2146 2279218 - 2279207 - G 84 -5.8 -4.91712 | opp_overlap 2279213 GCCAAGGGAGAAAAA GACG CATT CGTC GTCACGGATTTCTCG Daro_2110 2279915 - 2279424 - | regulatory protein, MarR TERM 2147 2280012 - 2280027 + H 91 -7.5 -5.10064 | overlap 2280012 2280012 TCGACAAAGGTTTTA GGGGG CTAGCC CCCCC TTTTTATATGTTCAA TERM 2148 2280371 - 2280381 + G 74 -6.8 -4.41348 | TACTGGGGCTTTTCA GCAG GTT CTGC TTTGTTTGCGGCGGC TERM 2149 2280721 - 2280731 + G 71 -8.2 -4.0827 | CATCGTGCTCGGTGT CGGC ACT GCCG TTTATCTGGATGTCT Daro_2111 2280035 - 2281252 + | Sodium/hydrogen exchanger Daro_2112 2281249 - 2282031 + | glutamine amidotransferase class-I:peptidase C26 TERM 2150 2282846 - 2282878 + G 70 -4 -4.62904 | gap 1, overlap 2282847 2282848 2282875 TGTGCCCTGCTGGCC G-TCGGCATCGCGCG CATG CTCGCCGTGCCGGTC TTTTTGACCCTCTTT Daro_2113 2282075 - 2283349 + | Sodium/hydrogen exchanger Daro_2114 2283346 - 2284500 + | carboxylate-amine ligase TERM 2151 2284615 - 2284605 - g 85 -6.8 -4.82901 | GTCGGCCCACAAAAA CAGG GCC CCTG GATCGACAAGAGCAA Daro_2115 2284497 - 2285759 + | Beta-lactamase Daro_2116 2286916 - 2286137 - | hypothetical protein TERM 2152 2286750 - 2286692 - G 85 -16 -3.21416 | gap 1, opp_overlap 2286696, overlap 2286694 TACGGCGATCAGCAA GATGGCCCAGCGCCCGTGGCGCATGGC TTCCTT GCGATACGCC-CAGGCGCTGGACAAGC TGGCTGGCCATAGAG TERM 2153 2286748 - 2286694 - G 89 -17.2 -3.17051 | gap 1, opp_overlap 2286696, overlap 2286692 CGGCGATCAGCAAGA TGGCCCAGCGCCCGTGGCGCATGGC TTCCTT GCGATACGCC-CAGGCGCTGGACAA GCTGGCTGGCCATAG TERM 2154 2286847 - 2286836 - G 95 -2.2 -5.63103 | CGGGAAGGAAAAAAA GGTA CCTC CACC AGCGATAGCGTTCAT Daro_2117 2288457 - 2287039 - | pyruvate kinase TERM 2155 2287207 - 2287191 - G 72 -10.9 -3.39803 | CAGTCACATCGACAA CGTCATG GCA CATGACG GCATGCAAACCCCAG Daro_2118 2289764 - 2288484 - | glycerate 2-kinase Daro_2119 2291174 - 2289843 - | major facilitator transporter TERM 2156 2290429 - 2290455 + g 88 -3.7 -5.5943 | gap 1, overlap 2290428 2290432 2290451 ACGCTGGCAAAAGTG TCGGCCGCCAGA CTGC TTTCGCGGC-GA TTTTTTTCGTCCTTT TERM 2157 2291821 - 2291837 + r 93 -3.6 -5.47159 | GGCTGAAAGTGGATT TGCGAC AACCC GGCGCA TTTTTTGTGTTGCAA TERM 2158 2292151 - 2292193 + r 78 -7.7 -4.30576 | gap 1, opp_overlap 2292149 2292151 2292154, overlap 2292154 CGAGTCGGCAAAACA GACTGGGCGGGTCGGGCGAT TGCG ATCGCCAGAGTCCCCCA-TC TTTTCCTACTACAAC TERM 2159 2292154 - 2292191 + r 84 -10.5 -3.7574 | opp_overlap 2292151 2292149 2292154, overlap 2292151 GTCGGCAAAACAGAC TGGGCGGGTCGGGCGAT TGCG ATCGCCAGAGTCCCCCA TCTTTTCCTACTACA Daro_2121 2293178 - 2292636 - | hypothetical protein TERM 2160 2293576 - 2293557 - H 72 -10.8 -3.07994 | overlap 2293574 GCTAACGCCACCGAA GGCTGTAT ATTT ATACAGCC ATGCTAGCTACCGTC Daro_2122 2293577 - 2293822 + | hypothetical protein Daro_2123 2293819 - 2294982 + | UMUC-like DNA-repair protein TERM 2161 2295410 - 2295424 + G 71 -7 -4.25104 | CTGGCTGCTCGCCTA CCGCGC GCT GCACGG TTTTCGTGGCGAGGC TERM 2162 2295824 - 2295858 + G 72 -12.9 -3.02144 | gap 1, overlap 2295826 TGACGCATTTTCCTT CGCCGGCCATCGATGC GACC GCATCG-TAGCCGGTG TCTTCAGGCGACTGG Daro_2124 2295210 - 2295890 + | RNA polymerase sigma factor Daro_2125 2295918 - 2296496 + | hypothetical protein Daro_2126 2296513 - 2296935 + | cytochrome c, class I TERM 2163 2297812 - 2297766 - g 100 -12.9 -4.386 | opp_overlap 2297765 CAATTGCTGAGAAAA CCGCTCACGCAGGGCAGCATG TACTT CCCGCTGACCTGCACGATCGG CATTTCCCGGCCCCT TERM 2164 2298280 - 2298262 - g 71 -7.4 -4.25283 | overlap 2298271 ATCTTGTCACCAAAA TCGGCAAA CTC CTCGCCGA GAACCAGGTCGATCC Daro_2127 2297070 - 2298701 + | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) TERM 2165 2298698 - 2298680 - f 72 -10.2 -3.31461 | opp_overlap 2298672 2298686 TAGCGAGTTCCATAA CCTGGTGC GGC GCACCGGG TAAGGACTTGATCGC TERM 2166 2298759 - 2298734 - f 77 -8.3 -4.03234 | GTCTTTGGATACAAA CCGTTGCAAGC TGTT ACTTGAAACGG AGAGGCATGGGCCTT TERM 2167 2298840 - 2298876 + F 83 -10.2 -4.08767 | gap 1, opp_overlap 2298848 CTCCCCCAATTGGCC GTCAGAAAGCCCCGC CTCCCCCT GCGGGGCTTTC-GCC TTTTGGGGGCCTGGG TERM 2168 2298869 - 2298848 - f 81 -10.1 -3.85817 | opp_overlap 2298840 ATTGGCCGTCAGAAA GCCCCGC CTCCCCCT GCGGGGC TTTCGCCTTTTGGGG TERM 2169 2298996 - 2299022 + F 78 -8.6 -4.27316 | overlap 2298997 ATTGACCAAACCTTG TTGTCGGCGGAC TGC GTCCGCCAACCG TTTTGAATTACCAAA TERM 2170 2298997 - 2299021 + F 70 -9.9 -3.16068 | overlap 2298996 TTGACCAAACCTTGT TGTCGGCGGAC TGC GTCCGCCAACC GTTTTGAATTACCAA TERM 2171 2299600 - 2299624 + G 80 -14.3 -3.06796 | CACGCTACCGATCGC CTGGGCTGAGC GAA GTTCGGCCCAG TTACGTGACCTCGGA Daro_2128 2299052 - 2299747 + | phospholipase/carboxylesterase Daro_2129 2300789 - 2299854 - | transcriptional regulator CysB-like protein Daro_2131 2301758 - 2301348 - | hypothetical protein TERM 2172 2301902 - 2301925 + r 91 -12.4 -3.84514 | opp_overlap 2301893 AATAACCTGACTCTC CAGCACCAGC AATC GCTGGCGCTG TTTGATACTTACACT Daro_2132 2302765 - 2302151 - | formylmethionine deformylase Daro_2133 2302837 - 2303349 + | hypothetical protein Daro_2134 2303454 - 2304449 + | thiosulphate-binding protein Daro_2135 2304451 - 2304744 + | ArsR family transcriptional regulator Daro_2136 2304937 - 2305119 + | hypothetical protein TERM 2173 2305124 - 2305147 + T 100 -8 -5.31275 | opp_overlap 2305125, overlap 2305125 CCGGCAGGTAAAAAA AGAGCCGACG TTAC CGCCGGCTCC TTTTTTGTCGTGGCC TERM 2174 2305125 - 2305146 + T 88 -11.5 -3.78042 | opp_overlap 2305125, overlap 2305124 CGGCAGGTAAAAAAA GAGCCGACG TTAC CGCCGGCTC CTTTTTTGTCGTGGC TERM 2175 2305146 - 2305125 - T 100 -13.7 -5.47218 | opp_overlap 2305125 2305124 CGGCAGGTAAAAAAA GAGCCGACG TTAC CGCCGGCTC CTTTTTTGTCGTGGC Daro_2137 2305818 - 2305171 - | putative cysteine desulfurase TERM 2176 2305759 - 2305745 - G 73 -10 -3.64703 | TTCGCGGGACGGAAA TTCGCG CAC CGCGAA TTCCAGACTCCGCTG Daro_2138 2306859 - 2305885 - | cysteine synthase Daro_2139 2307417 - 2306887 - | rhodanese-like protein TERM 2177 2307442 - 2307456 + H 78 -8.5 -4.15044 | TTTCGCTTTCGGCCA GCCGG ATTAA CCGGC TTTGTTCGGGGGCGG TERM 2178 2309227 - 2309275 + G 78 -4.4 -4.78981 | gap 2, opp_overlap 2309206, overlap 2309230 CAGAAGCCCGCGCCC TGCTCCGCCAG-GCCATCCG-GCG TGG CGCCCCGCTGGCTCAGGCTGATCA TTTGTTTTGATTGAT Daro_2141 2309103 - 2309285 + | hypothetical protein Daro_2142 2309362 - 2309604 + | hypothetical protein Daro_2143 2311155 - 2310145 - | hydrolase/lipase TERM 2179 2311436 - 2311423 - R 70 -3.8 -4.59109 | CAGACTGTGTAAAAA CTCC GACAGG GGAG ATGCCAATGGAATTC TERM 2180 2311510 - 2311531 + r 72 -4.5 -4.59109 | ATGGTTTGCACACCC CTGAAAATC ATCG GATTTTGAG TTTTTACACAGTCTC Daro_2144 2311906 - 2311625 - | diverged CheY-domain-containing protein Daro_2145 2312153 - 2313268 + | L-alanine dehydrogenase TERM 2181 2313425 - 2313382 - f 75 -11.6 -3.10409 | gap 1, opp_overlap 2313416, overlap 2313405 CAGCAAGGGATTCAA GGTGGCCGGGCCGGCTGCGAC AAT GTC-CAGCCGGTCCGGCTATA CAGCGCGGAATATCT TERM 2182 2314415 - 2314389 - g 73 -9.2 -3.87815 | opp_overlap 2314380 2314372 GCCCAGGGCGAGAAA GGCGCCTTCGTC GAT GTCGTCGGCGCC CGTCTCGATGACACG TERM 2183 2314930 - 2314944 + G 74 -5.6 -4.56597 | overlap 2314931 TCGATGGCGAATCGG CCTCGG CCT CCGAGA TTTTTGCGGCAGCCA Daro_2146 2313501 - 2315639 + | C-terminal processing peptidase-1 Daro_2147 2316284 - 2317336 + | Alpha/beta hydrolase fold Daro_2148 2318723 - 2317395 - | helix-turn-helix, Fis-type TERM 2184 2317628 - 2317608 - G 72 -12.5 -3.09834 | opp_overlap 2317605 CAGCGCATCAGGCAA GCCGAGCGC CCA GCGTTCGGC CACATTCTTCAGTTC Daro_2149 2319078 - 2318716 - | 5-carboxymethyl-2-hydroxymuconate isomerase TERM 2185 2318938 - 2318957 + g 77 -3.4 -4.98522 | opp_overlap 2318939, overlap 2318939 ACCGACCTGAAAACA ATCGAGCC CAAT GGCGCGAC TTTTTATATCCGGTT TERM 2186 2318956 - 2318939 - G 71 -6.9 -4.19746 | opp_overlap 2318938 2318939 CCGACCTGAAAACAA TCGAGCC CAAT GGCGCGA CTTTTTATATCCGGT Daro_2150 2320834 - 2319059 - | sensor histidine kinase TERM 2187 2319989 - 2319956 - G 88 -13.8 -3.58536 | overlap 2319948 2319944 2319945 AAAGGCAGCCGCAAA GGCCACCGCCGCCG CGGCCC CAAGGGCGGTGGCC CGGGCCTCGCCGGGG TERM 2188 2320270 - 2320250 - G 100 -8.9 -4.91109 | overlap 2320252 GTCGGATGACAAAAA GACGACGCC ATC GGCATCGGC CAGCAGCAGGGTATC TERM 2189 2320268 - 2320252 - G 80 -10.1 -4.08042 | overlap 2320250 CGGATGACAAAAAGA CGACGCC ATC GGCATCG GCCAGCAGCAGGGTA TERM 2190 2320825 - 2320815 - G 73 -4.6 -4.68994 | overlap 2320816 2320819 AGCAGCAGGCAAAAA GCGA CCG CCGC CCCGAGCATAAGCAA Daro_2151 2321705 - 2320914 - | ABC transporter related Daro_2152 2322523 - 2321708 - | binding-protein dependent transport system inner membrane protein TERM 2191 2322455 - 2322436 - G 74 -12.8 -3.21924 | overlap 2322434 GCACCTCCGAGAACA GGCCGGCC CGCG AGCCGGCC TCCCACAGAATCAGC Daro_2153 2323507 - 2322527 - | putative solute-binding periplasmic protein of ABC transport TERM 2192 2323044 - 2323070 + g 71 -6.4 -4.19238 | opp_overlap 2323025 2323024 TGCACGTCCTTGCCC GGCTTGTCGGAC CAG GTCAGGCCGGCC TTTTCCAGTTCCGCG TERM 2193 2323701 - 2323682 - H 100 -7.8 -5.3104 | overlap 2323684 TCATGAAAAATAAAA TAGTGCGG AAAT CCGCACTT CGGGACAGCAAGCCA TERM 2194 2323699 - 2323684 - H 85 -10.4 -4.26857 | overlap 2323682 ATGAAAAATAAAATA GTGCGG AAAT CCGCAC TTCGGGACAGCAAGC TERM 2195 2324417 - 2324438 + G 100 -8.7 -5.05782 | gap 1, overlap 2324431 2324435 CAAACTCGGTGGAGC GGCCAAGCTC GGT GGGCT-GGCC TTTTTTGGCCTGGCT Daro_2154 2323950 - 2325185 + | hypothetical protein Daro_2155 2325185 - 2326168 + | peptidase M48, Ste24p Daro_2156 2326198 - 2327304 + | hypothetical protein TERM 2196 2327424 - 2327435 + F 72 -5.8 -4.29845 | TACGCGCCGGATCAG GCAG AATT CTGC TTTTCCCTTAAATTA Daro_2157 2327464 - 2327892 + | hypothetical protein TERM 2197 2328157 - 2328138 - g 76 -9.2 -4.05629 | AGCAAATTGAAAGAA CTGGTGCC CCAA GGCGCCAG GGTGCTGATGCTCTA TERM 2198 2329000 - 2328973 - g 71 -6.8 -4.183 | CCAAGCTGGAACAAA TGGGACGTGCCG TTTT CGGCCTGACCCA GCCCTCCGCCGAAAC Daro_2158 2328057 - 2329214 + | Iron-containing alcohol dehydrogenase TERM 2199 2329251 - 2329222 - T 86 -10.7 -3.93237 | overlap 2329223 GTAAATAATCAAGAA CGCCTTGCGGC TCAGGCCC GCCGCAAGGCC ATGTGGGCGGAAATC TERM 2200 2329250 - 2329223 - T 86 -14.2 -2.94858 | overlap 2329222 TAAATAATCAAGAAC GCCTTGCGGC TCAGGCCC GCCGCAAGGC CATGTGGGCGGAAAT Daro_2159 2329850 - 2329233 - | TetR family transcriptional regulator TERM 2201 2329675 - 2329657 - G 73 -8.9 -3.90316 | ATCGGGGCAAAAACA TCTTCGC GCATG GCGAAGA ACAACTCGGCCTTGT TERM 2202 2329732 - 2329709 - G 71 -6.6 -4.23104 | gap 1, opp_overlap 2329729, overlap 2329700 2329710 TGAAATGCCAATAAA CGGC-GCCGCG TGT CACGCCAGCCG CCTTGGCAATTTTTT Daro_2160 2329984 - 2331159 + | secretion protein HlyD TERM 2203 2332032 - 2332042 + G 75 -8.2 -4.25104 | opp_overlap 2332028 2332031, overlap 2332002 CGGCCAGCCAACCAT CGCC ATG GGCG TTTTCCTGCAGACCG TERM 2204 2332284 - 2332308 + G 70 -10 -3.55071 | overlap 2332285 GATTCCGATGGTCGC CGTGCCGATC TCGCT GATCGGCACC TTTGCCGGCCTGTGG TERM 2205 2332285 - 2332307 + G 73 -13.5 -2.72829 | overlap 2332284 ATTCCGATGGTCGCC GTGCCGATC TCGCT GATCGGCAC CTTTGCCGGCCTGTG Daro_2161 2331169 - 2334291 + | hydrophobe/amphiphile efflux-1 HAE1 Daro_2162 2334288 - 2335715 + | RND efflux system, outer membrane lipoprotein, NodT TERM 2206 2335767 - 2335735 - T 81 -13 -2.70932 | gap 1, opp_overlap 2335731, overlap 2335765 TTGGTCGCTCAAGCA TTGCTTATACGGACC CTGG GGTCCGTATAA-CAA TTGGCATTGAATCGG Daro_2163 2336441 - 2335809 - | hypothetical protein TERM 2207 2335838 - 2335851 + g 75 -2.4 -5.0133 | GATAATTTTCAAATC GAAC CGGTGC GTTC TTTTTTGCCGAGATA TERM 2208 2336622 - 2336588 - R 100 -28.8 -2.53876 | GTCGATGTGAATTTA GCGGACGGCCCAAAGT GGC ACTTTGGGCCGTCCGC TGGAATGAGTCGGAA Daro_2165 2338053 - 2336665 - | hypothetical protein Daro_2166 2338604 - 2338053 - | hypothetical protein Daro_2167 2338874 - 2338608 - | hypothetical protein Daro_2168 2339767 - 2338874 - | hypothetical protein Daro_2169 2342571 - 2339770 - | Rhs element Vgr protein TERM 2209 2340379 - 2340393 + g 71 -9.2 -3.82218 | GGGGACGGTACCGGT GCCGCC GAG GGTGGC TTTGATGGTGTCGCT TERM 2210 2340501 - 2340520 + g 74 -3.4 -4.86731 | overlap 2340502 GTTTGTCGGCTTGGG GGTCGCCT TTGA GGGCGGCG TTTTGTTTGGCGGCG TERM 2211 2340525 - 2340548 + g 73 -10.3 -3.66095 | TGAGGGCGGCGTTTT GTTTGGCGG CGACCT CCGCCAAGC TTTGCGTCAGGCTTT TERM 2212 2340700 - 2340731 + g 70 -4.3 -4.57581 | CGCCAGTTCGGCGCC GTGGCCACGGTCG GCTTGG CGGGCGTTGTCAC TTTGTTGTTTGAGGT Daro_2170 2343172 - 2342699 - | hypothetical protein Daro_2171 2345911 - 2343212 - | AAA ATPase, central region:Clp, N terminal TERM 2213 2345666 - 2345656 - G 77 -8.2 -4.36914 | opp_overlap 2345655 2345663 TGTGCGTCGAGAAAA CCGG CGT CCGG GTATTGCCGGTCTTG Daro_2172 2346993 - 2345929 - | hypothetical protein TERM 2214 2346519 - 2346550 + gr 78 -9.5 -3.96841 | gap 1, opp_overlap 2346504 2346515 2346517, overlap 2346504 2346515 2346520 TCGGGAGAAAACGGT TCTGCCGATCC-GT TTCAT ACTGGATCGGCAGC TTGTATTTCTTCCAG TERM 2215 2346520 - 2346549 + gr 82 -13 -2.97382 | gap 1, opp_overlap 2346504 2346515 2346517, overlap 2346504 2346515 2346519 CGGGAGAAAACGGTT CTGCCGATCC-GT TTCAT ACTGGATCGGCAG CTTGTATTTCTTCCA Daro_2173 2348789 - 2346957 - | hypothetical protein TERM 2216 2347237 - 2347252 + gr 80 -11.8 -3.2963 | ACGCCTTCGATCTGC CGGCGG CTGG CCGCCG TTCTCGGCAGATCGT TERM 2217 2348592 - 2348604 + gr 70 -4.8 -4.56597 | AGTGAATTGCGGGTA GCTG TCTTC CAGC TTTTTGGAAACCCGC Daro_2174 2349269 - 2348790 - | hypothetical protein TERM 2218 2349083 - 2349073 - G 73 -4.6 -4.61873 | TCGGACAAACCAAAA CCGG CGA CCGA GCGCATCGTCAGCGG TERM 2219 2349295 - 2349276 - R 100 -12.2 -5.31275 | opp_overlap 2349275 TTTGATCATAAAAAA GGCGGAAA CGAG TTTCCGCC GTGGATTCCACAAAA Daro_2175 2349854 - 2349318 - | hypothetical protein Daro_2176 2351371 - 2349887 - | hypothetical protein Daro_2177 2351880 - 2351368 - | hypothetical protein Daro_2178 2352578 - 2351961 - | putative lipoprotein TERM 2220 2351997 - 2352027 + g 76 -6 -4.64144 | opp_overlap 2351994, overlap 2351998 ATTGGCACCAGATGC CGCTGGCGCGGT ATCCGCC GCCGCGCTGGCC TTTTTGGGAGTTGTT TERM 2221 2352596 - 2352622 + H 90 -11.7 -3.93288 | opp_overlap 2352601, overlap 2352601 AGACTCCTGAGTATG CCAAATGGCGT ATAAC ATGCCATTTGG TTTGCTTAGATGAAA Daro_2179 2352804 - 2353373 + | putative lipoprotein Daro_2180 2353386 - 2354729 + | hypothetical protein TERM 2222 2354957 - 2354944 - g 70 -3.1 -4.64495 | AGCCAAGAAAAACAA CTTCA ATGC CGAAG ACATTTTCGATGCCA TERM 2223 2355066 - 2355093 + G 85 -4 -5.40474 | overlap 2355068 CTTTGCAGCTGGTGC TATTCGGCGACC AGCT GGCCGGCGAACA TTTTTTTGACAAGCT Daro_2181 2354726 - 2355499 + | hypothetical protein Daro_2182 2355510 - 2358245 + | Rhs element Vgr protein Daro_2183 2358220 - 2358942 + | hypothetical protein Daro_2184 2358939 - 2359379 + | putative transmembrane protein Daro_2185 2359672 - 2360769 + | ImpA, N-terminal TERM 2224 2360778 - 2360810 + T 100 -13.6 -4.07618 | gap 1, opp_overlap 2360775, overlap 2360781 AAACTAAAACAGTCT TATCAGGCGGTTGCT GACT GGCAACCGCCTG-TA TTTGGTTATTGACCG TERM 2225 2360781 - 2360808 + T 100 -17.8 -3.62957 | opp_overlap 2360775, overlap 2360778 CTAAAACAGTCTTAT CAGGCGGTTGCT GACT GGCAACCGCCTG TATTTGGTTATTGAC Daro_2186 2361601 - 2360816 - | OmpA/MotB Daro_2187 2362581 - 2361598 - | hypothetical protein Daro_2188 2366390 - 2362578 - | hypothetical protein TERM 2226 2366335 - 2366313 - G 70 -4.1 -4.72272 | gap 1, overlap 2366316 2366317 GGCCCCCAGGAAAAA GAATG-CCGC CACG GCGGCCACCC CGACAAATGAAAGAA TERM 2227 2366331 - 2366316 - G 74 -6 -4.47707 | overlap 2366313 2366317 CCCCAGGAAAAAGAA TGCCGC CACG GCGGCC ACCCCGACAAATGAA Daro_2189 2367833 - 2366412 - | hypothetical protein TERM 2228 2367341 - 2367358 + g 80 -3.3 -5.14563 | overlap 2367342 CAAATTCGCGAATTG GTGCGGC ATCG GCTGCAA TTTTTTCCTGCAAGC Daro_2190 2368119 - 2367853 - | PAAR Daro_2191 2369011 - 2368163 - | hypothetical protein TERM 2229 2369104 - 2369076 - H 70 -6.9 -4.01703 | opp_overlap 2369076 AGAACATGCAAATAA TCAATTCGTATTA TTT TAATACAAATGGA TTTCTTTATGAACTT TERM 2230 2369076 - 2369104 + H 70 -4.7 -4.56969 | opp_overlap 2369076 AGAACATGCAAATAA TCAATTCGTATTA TTT TAATACAAATGGA TTTCTTTATGAACTT Daro_2192 2369211 - 2369801 + | hypothetical protein TERM 2231 2369875 - 2369857 - T 100 -16 -4.14243 | GACCTCAGCGCAAAA TGCCCCGC ATC GCGGGGCA AACAAAACTTATCGA Daro_2193 2370602 - 2369943 - | ankyrin Daro_2194 2371381 - 2370608 - | TatD-related deoxyribonuclease Daro_2195 2371753 - 2371391 - | Type IV pilus assembly PilZ Daro_2196 2372779 - 2371760 - | DNA polymerase III, delta prime subunit TERM 2232 2372027 - 2372041 + g 76 -5.6 -4.66833 | overlap 2372011 2372009 CAAAAGTTTTCCTTT GCTGTC CTT GACCGC TTTTTCCAGTTCAGC tdk 2373390 - 2372776 - | thymidylate kinase Daro_2198 2374382 - 2373387 - | aminodeoxychorismate lyase Daro_2199 2374475 - 2375494 + | glycine cleavage T protein (aminomethyl transferase) Daro_2200 2375507 - 2376256 + | hypothetical protein Daro_2201 2376708 - 2376226 - | ErfK/YbiS/YcfS/YnhG Daro_2202 2377145 - 2376705 - | tRNA-adenosine deaminase TERM 2233 2377175 - 2377152 - R 72 -4.4 -4.72272 | opp_overlap 2377153 2377154 2377169, overlap 2377135 2377153 2377154 2377156 CTCGCGCATGAAAAA TTCATCGCCG AGTC CGGCGACGGT TTCCTCGATTATTCC TERM 2234 2377173 - 2377154 - R 73 -11.4 -2.65504 | opp_overlap 2377153 2377154 2377169, overlap 2377135 2377153 2377152 2377156 CGCGCATGAAAAATT CATCGCCG AGTC CGGCGACG GTTTCCTCGATTATT TERM 2235 2377208 - 2377220 + r 81 -6.3 -4.83169 | opp_overlap 2377207 CTCGATCGTCAACAG GACAA GTT TTGTC TTTTTCTAACAAGAT Daro_2203 2378119 - 2377703 - | hypothetical protein Daro_2204 2381406 - 2378101 - | hypothetical protein Daro_2205 2382505 - 2381666 - | hypothetical protein TERM 2236 2382410 - 2382445 + g 86 -13.4 -3.41745 | gap 1, opp_overlap 2382431 GCCGTAAGCGATCGG CCCTTGCGTCATCGTGT ACA ACGCGATG-CGCAAGAG TTCCTGTTGTGCGGC Daro_2206 2382937 - 2382581 - | hypothetical protein Daro_2207 2384170 - 2382965 - | hypothetical protein Daro_2208 2384988 - 2384185 - | TatD-related deoxyribonuclease TERM 2237 2384677 - 2384664 - G 70 -4.5 -4.57569 | overlap 2384665 GGACGTGCTGAAAAA CCTGC TTCT GCAGA TCCAAGGACTTATAG TERM 2238 2384865 - 2384901 + g 71 -9.5 -3.82378 | gap 2 TGCGCGGCCAAGCTC GCGGCGTCGTGGTCACC GCTAG GGTGAACACG-C-CCGC TTCTTCTGCATCCAT Daro_2209 2386369 - 2384996 - | hypothetical protein Daro_2210 2387253 - 2386366 - | hypothetical protein Daro_2211 2389205 - 2387253 - | KAP P-loop TERM 2239 2388653 - 2388669 + g 81 -5.7 -4.78149 | overlap 2388649 CCTTGCGAAATGCCT CGACCTC CTC GGGGACG TTTTTGGATTCTGAC Daro_2212 2390228 - 2389332 - | hypothetical protein Daro_2213 2391346 - 2390228 - | hypothetical protein Daro_2214 2392021 - 2391527 - | hypothetical protein TERM 2240 2391877 - 2391847 - G 78 -13.3 -3.15574 | overlap 2391845 TGAACTCCACCAACA CGAGCAGACCGGA GGGCA TCCGGTATGCCCG GTCAAGTTTCGCCAC Daro_2215 2392542 - 2392069 - | hypothetical protein Daro_2216 2392828 - 2392550 - | hypothetical protein Daro_2217 2393868 - 2392825 - | hypothetical protein TERM 2241 2393964 - 2393951 - H 70 -3.7 -4.66163 | overlap 2393952 2393953 ATCCCCACTCAAAAA GGCCG ATTT CGGCA TCGGGCCCGGCCCGC TERM 2242 2395373 - 2395328 - g 95 -18.3 -3.29043 | gap 1, opp_overlap 2395341, overlap 2395316 2395330 AACCGTCTCGCACAA GACGCGGCAGGAACGCGCGCAG TTT CTGCG-GCGTTTCTTCCGCGAC CTGAAGCAGAAGGCG TERM 2243 2395371 - 2395330 - g 91 -19.5 -3.21276 | gap 1, opp_overlap 2395341, overlap 2395316 2395328 CCGTCTCGCACAAGA CGCGGCAGGAACGCGCGCAG TTT CTGCG-GCGTTTCTTCCGCG ACCTGAAGCAGAAGG TERM 2244 2395341 - 2395360 + G 84 -10 -4.15222 | gap 1, opp_overlap 2395330 2395328 AAGACGCGGCAGGAA CGCGCGCAG TTT CTGCG-GCG TTTCTTCCGCGACCT Daro_2218 2395071 - 2396282 + | hypothetical protein TERM 2245 2396291 - 2396346 + T 100 -16.9 -3.14564 | gap 2, opp_overlap 2396298 2396319 GGTGTGAGCGGCGTC CG-GACAAGGCGGTGCCGGGCGG-GAA CGAT TGCGCCGCCCGGCATCGCCTTGCGGCG TTCCTCACGCCGTCA TERM 2246 2396338 - 2396298 - T 100 -19 -3.28712 | gap 1, opp_overlap 2396291, overlap 2396319 GCGGCGTCCGGACAA GGCGGTGCCGGGCGG-GAA CGAT TGCGCCGCCCGGCATCGCC TTGCGGCGTTCCTCA Daro_2219 2398354 - 2396351 - | ParB-like nuclease TERM 2247 2397095 - 2397119 + g 71 -7.7 -4.09739 | CTTGGGCGACGGCAG CGACACCAGCG GTT CGTCGGTGCCG TTTTCGGCGGCTTGG TERM 2248 2398317 - 2398332 + g 71 -9 -3.73107 | overlap 2398328 GTACGGGGCGACGCT TCGACG ATGG CGTCGA TTTCGGCTTTGGTGA Daro_2220 2398642 - 2399322 + | GGDEF TERM 2249 2399664 - 2399685 + F 82 -11.5 -3.54459 | GAACTGAGCCCTGCG CCGGCCGAC GCTC GTCGGCGGG TTTCCAAGCCCTTGG TERM 2250 2399778 - 2399793 + F 95 -10.4 -4.64676 | CTGGCCTTTGCCAAC CGGTCG TCCA CGACCG TTTTCTTGCCCATCC TERM 2251 2399813 - 2399851 + F 100 -14.4 -4.4078 | overlap 2399804 CTTGCCCATCCCACC CGGGGAGCCCGCCTCCCC GAT GGGGCGTTGTGTTCCCCG TTTTCCTTGGAGAAC TERM 2252 2399942 - 2399954 + G 73 -9.1 -3.87583 | CCGACCCTGCCCCGC CCTGC AGA GCAGG TTTGCCTTTCCGTTT Daro_2221 2399873 - 2404882 + | helicase, C-terminal TERM 2253 2404893 - 2404918 + F 100 -14.7 -4.86731 | CTTGAGTTGATTTCA CCCCCATGGCC GAAA GGCTGTGGGGG TTTTCTTTGACGGAG Daro_2222 2404943 - 2405788 + | hypothetical protein Daro_2223 2407192 - 2406023 - | transposase IS4 Daro_2224 2407332 - 2408006 + | hypothetical protein TERM 2254 2408809 - 2408774 - g 76 -13.3 -3.12351 | opp_overlap 2408767 TCGGGCGAGATCGAA GCCGACGATCTGGTC TACCTG GACCGGATCGCCGAC CGCTGGATGAAGATT Daro_2225 2408345 - 2408881 + | hypothetical protein Daro_2226 2409082 - 2408852 - | hypothetical protein TERM 2255 2408934 - 2408990 + g 76 -13.8 -3.06696 | gap 2, overlap 2408975 TTTTCCAGCAGATCG GGACGTTCATCGTTCAGCGTATCGGCCC ATC GGGCCAATGC-CTGGTCGATGT-CGTCC TGTGTTCGCGCCCCG TERM 2256 2409463 - 2409497 + G 70 -9.9 -3.53091 | overlap 2409454 2409453 CAGTTCGTCCGCTGG CTCTGCCACGGCCTG TTCGT CAGGCCGCTGCACAG TTTGCAGAAGGGGCT Daro_2227 2409211 - 2409726 + | hypothetical protein TERM 2257 2409760 - 2409735 - f 95 -13.9 -3.32844 | CGCCTGACCCGAGAA GCGCCGGGCCA TCAC CGGCCCGGCCC GTGATGCGGCGGCAC Daro_2228 2410010 - 2410252 + | hypothetical protein TERM 2258 2410330 - 2410306 - f 100 -17.1 -3.72231 | opp_overlap 2410308 2410309 CCAGACATCCAACAA CCCCGTGGGGC TCA GCCCGACGGGG TGGGGTTCCACGATA TERM 2259 2411000 - 2411022 + G 80 -14.8 -3.08992 | TACCTCGCCTTCATG CGCGGCGCGA CGA TCGAGCCGCG TGTCTTCCGGTGACT Daro_2229 2410364 - 2411035 + | hypothetical protein TERM 2260 2411092 - 2411063 - T 100 -17.1 -3.18582 | overlap 2411081 TACCCGATGGAGCAA CGCCTCCCCGGCA GAAA CGCTGGGGAGGCG GTCGCCCGCAGAAAA TERM 2261 2411128 - 2411108 - T 70 -5.3 -4.36914 | opp_overlap 2411123, overlap 2411112 2411114 GTCGCCCGCAGAAAA CCAACAGCG CTA CGCCGCCAG GCGGCACTGGGCGTA Daro_2230 2411332 - 2411117 - | hypothetical protein TERM 2262 2411732 - 2411768 + H 91 -9.4 -4.70046 | gap 1, overlap 2411720 GCACATTCATCCCAA GCGGGGACCTCG-TCCC CTTG GGGATCGGCGTTTCCGC TTTTCTGGTTTTCTA TERM 2263 2412338 - 2412353 + G 71 -9 -3.72576 | overlap 2412320 2412317 2412332 TTTCGTCGTCGCCGG CGACAC GGTG GTGTCG TTTGCTGAACGCGGG Daro_2231 2411796 - 2412377 + | DNA repair protein RadC TERM 2264 2412510 - 2412553 + F 85 -13.9 -2.80511 | gap 2, overlap 2412507 CTCATTGTCCTGTTT GCGCAGGC-G-ACGGCGTGCC GTTG GGTACGCTGGGCCGCCTGCGC TGGTTCCGTTGTCGC Daro_2232 2412651 - 2412959 + | hypothetical protein Daro_2233 2412956 - 2413294 + | hypothetical protein TERM 2265 2413303 - 2413341 + T 70 -6.8 -4.0492 | gap 3, overlap 2413304 AGCATAACTTATCTA CGGCA-GG-GCGTTGCGCC ACGC GGC-CAACGCTCCTTGCCC TTTCTCTGGGGCTTC Daro_2234 2414714 - 2413371 - | hypothetical protein TERM 2266 2414487 - 2414473 - G 79 -8.5 -4.44667 | overlap 2414440 TGCCGGAAGAAGAAA CGCCG CTCTT CGGCG CGCGACACTAGGTAG Daro_2235 2415709 - 2414726 - | hypothetical protein Daro_2236 2417370 - 2415706 - | hypothetical protein TERM 2267 2417663 - 2417630 - R 72 -10.9 -3.00525 | opp_overlap 2417658, overlap 2417625 CGGGGCCAAACGATA GTGACGGTGGCCGGA CATG CCCGGCCACCGCTAT GCCAGTAGCGTTTTA Daro_2237 2420402 - 2417940 - | putative ATPase involved in DNA repair TERM 2268 2419382 - 2419410 + g 72 -10.9 -3.29144 | CGGCCTGGGCACCAG CCAGCACCGTGAG GCA TTCCCGGCGCTGG TTCTGCAAACCCTGC Daro_2238 2421799 - 2420489 - | DNA repair exonuclease-like protein Daro_2239 2423124 - 2421796 - | hypothetical protein Daro_2240 2423877 - 2423317 - | hypothetical protein Daro_2242 2424494 - 2426470 + | hypothetical protein Daro_2244 2427895 - 2426675 - | hypothetical protein TERM 2269 2426875 - 2426905 + g 74 -11 -3.53012 | opp_overlap 2426874 2426873 GGACATTCGGAAAGG CCGCCGCGCTCCGA GCG TCATAGCGCAGCGG TTTGACGAAGCGGCG Daro_2245 2428847 - 2427903 - | hypothetical protein TERM 2270 2428237 - 2428200 - G 71 -5.5 -4.41348 | gap 1 GCTCGGGGAAAGAAA CAGTCGACTACC-TGGGT CCA AGCCACGGTAGACGTCCG GCCCACCCAGGCCAT TERM 2271 2428575 - 2428544 - G 72 -13.6 -2.62184 | gap 1 CCGGCGCCGATAGCA CCCG-CGCCGGACGG ACG CCGGCCGGCGGCTGG GGCTCGAAGCCCTCC Daro_2246 2429380 - 2429105 - | prophage CP4-57 regulatory TERM 2272 2429367 - 2429331 - G 80 -3.6 -5.08824 | gap 1 GGCGTAGTCAAAAAA GTACTGGAAGCCGCCAC CTTC GCGGCGG-TACTGGTAC GGATGTTGGGCATGA Daro_2247 2430399 - 2430040 - | helix-hairpin-helix DNA-binding motif-containing protein TERM 2273 2430360 - 2430381 + g 70 -4.4 -4.56978 | gap 1, overlap 2430361 GGTTGCCCCCAAGTC G-CTTCGCC AGACG GGCGGAGTC TTTCTTCTTTACCGC TERM 2274 2431574 - 2431616 + H 74 -10.7 -3.18681 | GCTTGGCAAGACCTT TGACCATACTGCCTTCC GAATGGCCG GGGAGGTGGTGTGGTCA TTCGTCGAATTCCGG TERM 2275 2432136 - 2432115 - g 71 -5.9 -4.37886 | gap 1 TCATGGGCGACAAAA TTG-CCGACA AAA TGCCGGTCAA GCTGGTGCATCGCAT Daro_2248 2431610 - 2432221 + | hypothetical protein TERM 2276 2432957 - 2432981 + G 84 -6.3 -4.96848 | overlap 2432959 TTGGGCTGCGCCATC TGGGGACCGCC CGT GCCGGTGCCTA TTTTTCTGTCGCCCC Daro_2249 2432242 - 2433294 + | hypothetical protein Daro_2250 2434917 - 2433628 - | RNA-directed DNA polymerase (Reverse transcriptase) TERM 2277 2433931 - 2433941 + g 70 -3.2 -4.63218 | GATTTTCTCCACCAT GCGT CGA ATGC TTTTCTTCGACGGCC TERM 2278 2435375 - 2435400 + r 74 -9.7 -3.54424 | CGTTACCTCCATGAC TGCTCCGGTTG CTTC CGGCTGGAGCA TTTCGCCGGGTGGGG TERM 2279 2435453 - 2435434 - R 77 -8.5 -4.14739 | opp_overlap 2435409 TCACCCACTGGAAAA GCGCCGC CTTTGC ACGGCGC ACGCCCAAAACGGTC Daro_2251 2436041 - 2435706 - | hypothetical protein Daro_2252 2439136 - 2436038 - | heavy metal efflux pump CzcA TERM 2280 2436446 - 2436430 - G 73 -13.7 -2.76055 | overlap 2436425 2436427 CGAAGAGAGAGAGGA TGCCGCC GAT GGCGGCA AAAGGCACGTTGGCG TERM 2281 2437014 - 2437045 + g 73 -4.2 -4.59109 | overlap 2437016 GGCTTGCCGAGATTG GCTTCCAGCGCCAC GTCG GTGGCACCGGACAC TTTTTCGACAATCTC Daro_2253 2440342 - 2439146 - | secretion protein HlyD TERM 2282 2439786 - 2439805 + g 71 -7.8 -4.00782 | overlap 2439801 AGCTTGTCGGTTGAC GCCCGC AAGTTGGC GCGGGC TTTCTCGTGCTCTGC Daro_2254 2441649 - 2440339 - | Outer membrane efflux protein TERM 2283 2441698 - 2441678 - R 76 -7.6 -4.26871 | gap 1 CAAGCGATGAAGAAA CGGACTGCC ATGA GGCA-TCCG CTGACGAACGATGTC Daro_2255 2442067 - 2441717 - | hypothetical protein Daro_2256 2442630 - 2442196 - | MerR family transcriptional regulator TERM 2284 2442673 - 2442644 - H 75 -5.1 -4.60041 | gap 1 ATTCATCTCCAAAAA TCTTGACCCTATAG TAG CTACAGGGT-ATGA AATGAGCAATATCCA TERM 2285 2442938 - 2442916 - g 73 -4.6 -4.59773 | overlap 2442917 TTTGATTCGCAAAAA GCTTGGCGGC ATG GCTGCCGTGC AAGGACTGGAGTTCA Daro_2257 2442707 - 2444938 + | ATPase, E1-E2 type:heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase:heavy metal translocating P-type ATPase TERM 2286 2445038 - 2445069 + T 84 -13.8 -2.62396 | overlap 2445057 AGCATGGGTCTATGT GTGTCAGATTGAGC TATA GCTCAGACTGACAC TGCTGTGCCAAGCTG Daro_2258 2446522 - 2445131 - | heavy metal sensor kinase TERM 2287 2445562 - 2445543 - G 73 -10 -3.61601 | overlap 2445541 TAAAACTCAGAAAGA CTGGCGAT CTCG ACCGCCAG ATCAACCGTTTCTCG TERM 2288 2445908 - 2445869 - G 78 -16.5 -2.53876 | TTCGACGGGAATGGA CTCCACCGCTAACCGCC GGTTAA GGCGGTTAGCGGTAATG CCAGCGGCTGAGCGG Daro_2259 2447196 - 2446519 - | two component heavy metal response transcriptional regulator TERM 2289 2446900 - 2446885 - G 71 -5.4 -4.40804 | CAGCAGTTCAGAAAA GGCGAA AGGT TTCACC AGGTAGTCATCGGCC TERM 2290 2447165 - 2447189 + g 70 -5 -4.43681 | overlap 2447149 2447167 AGGTAATCGCCGGTT TTCTGTTCGT CTTCC ACGACCAGGA TTTTCATGTTCACTC Daro_2260 2447347 - 2447994 + | cytochrome c family protein TERM 2291 2448439 - 2448411 - g 72 -3 -4.8622 | gap 1, overlap 2448412 2448413 CTGTTGAAGGAAAAA CCCAAAGCCGTCG GCCT CG-CTGCCCCGGG CATGCCGCAGGGCTC Daro_2261 2448093 - 2448542 + | hypothetical protein Daro_2262 2448561 - 2448899 + | hypothetical protein Daro_2263 2448953 - 2450227 + | Outer membrane efflux protein TERM 2292 2450565 - 2450554 - g 78 -4.4 -4.72486 | GAGAAAGTGCAAAAA CTTG GCGT CAAG ACGGAGGCGGCCAGT TERM 2293 2451460 - 2451438 - g 73 -9 -3.91716 | opp_overlap 2451452 GGACGGCGTAAAGAA CGGCGAACCC GTC GTGGTCGCCG CCAATTTCCTGATCG Daro_2264 2450224 - 2451864 + | secretion protein HlyD Daro_2265 2451888 - 2455043 + | heavy metal efflux pump CzcA Daro_2266 2455147 - 2455644 + | twin-arginine translocation pathway signal TERM 2294 2455872 - 2455886 + G 74 -5.7 -4.56597 | CGCGACTGACCTGGG CGGTA TCCAC TACCG TTTTTGCAGCGCCAA Daro_2267 2455750 - 2458068 + | ATPase, E1-E2 type:copper-translocating P-type ATPase:heavy metal translocating P-type ATPase Daro_2268 2458215 - 2458541 + | hemerythrin-related protein Daro_2269 2458638 - 2458958 + | hypothetical protein Daro_2270 2459031 - 2459273 + | hypothetical protein TERM 2295 2459472 - 2459460 - f 72 -5.5 -4.57569 | GGAGTTGCTGAAAAA CCCTC GAT GAAGG AAGAAAAACATGCTG Daro_2271 2459503 - 2459772 + | hypothetical protein Daro_2272 2460070 - 2460531 + | flagellar basal-body rod protein FlgB TERM 2296 2460794 - 2460781 - g 70 -3.7 -4.59773 | GCTGATGCCGAAAAA GCCGC TCCT GCCGC CGAAATGAAGGCCGA Daro_2273 2460694 - 2460954 + | hypothetical protein TERM 2297 2461260 - 2461246 - f 73 -9.2 -3.56985 | overlap 2461244 CATAAAAAACGAATA GGCCGC TCC GCGACC AGGAGAGCAAAATGA TERM 2298 2461584 - 2461557 - g 78 -2 -5.0538 | gap 1, overlap 2461560 2461561 2461573 TTCGACGTCAAAAAA GAACTTGTCTACG AAA CGTGGACAA-CCC TGCCGCCTGGCGTTG TERM 2299 2461582 - 2461560 - g 73 -4.8 -4.63089 | overlap 2461557 2461561 2461573 GACGTCAAAAAAGAA CTTGTCTACG AAA CGTGGACAAC CCTGCCGCCTGGCGT Daro_2274 2461272 - 2462600 + | metal-dependent phosphohydrolase TERM 2300 2463074 - 2463043 - g 75 -8.6 -4.21936 | overlap 2463036 2463044 CGGAGAATTGGAAAA CGCAGCGCATCCCA GCAG TGGGGCGTGCTGCA ACCGCCCACCGGTCA Daro_2275 2462597 - 2463100 + | YHS Daro_2276 2463128 - 2463388 + | hypothetical protein Daro_2277 2463385 - 2464035 + | protein-S-isoprenylcysteine methyltransferase Daro_2278 2464856 - 2464152 - | cytochrome c biogenesis protein, transmembrane region TERM 2301 2464643 - 2464609 - G 86 -13.4 -3.54676 | overlap 2464605 ACCCAGCCAAACGAA GCCGTCGCCACGCCCA TGA CGGTCGTGGCGGTGGC CATGCCGGCTATGAA Daro_2279 2465252 - 2464860 - | hypothetical protein Daro_2280 2466406 - 2465264 - | tetrahydromethanopterin S-methyltransferase subunit A Daro_2281 2466753 - 2466403 - | ArsR family transcriptional regulator TERM 2302 2467134 - 2467117 - R 100 -12.7 -4.90266 | opp_overlap 2467110 2467107 2467106 CCCACCAATGAAAAA CGCTCCG TCAC CGGAGCG CTGATCATGGCTTTT Daro_2282 2467436 - 2467158 - | hypothetical protein TERM 2303 2467258 - 2467282 + g 78 -7.1 -4.68724 | TCCATCACGGCGTCC TGTTTCATGCG CAC CGCATGACCCA TTTTGTCTTCCATGC TERM 2304 2467502 - 2467537 + r 78 -11.2 -3.54146 | opp_overlap 2467519, overlap 2467500 2467505 AACCTGACAGTTCCC CAACGTGGTGATGACA ATGG TGTCATCGCCACGTAA TCTTTAATTCAGCCG TERM 2305 2467505 - 2467534 + r 100 -17.3 -2.90199 | opp_overlap 2467519, overlap 2467502 2467500 CTGACAGTTCCCCAA CGTGGTGATGACA ATGG TGTCATCGCCACG TAATCTTTAATTCAG Daro_2283 2467935 - 2467546 - | hypothetical protein Daro_2284 2468228 - 2468530 + | transposase IS3/IS911 Daro_2285 2468527 - 2469354 + | integrase catalytic subunit TERM 2306 2469350 - 2469330 - T 85 -14 -2.73364 | GGCTTACTTCAACCA GCCGCTGC TCGCC GCAGCGGC TTAACCCGCAGAGAA Daro_2286 2470398 - 2469628 - | hypothetical protein TERM 2307 2470846 - 2470870 + H 76 -9.1 -3.85698 | overlap 2470843 TTCTTCCCATAGCGC CGTTCCGCCCG TAG CGGGCCGGCCG TTTCTCACCCCACGG TERM 2308 2470980 - 2470996 + G 71 -7.9 -4.08692 | overlap 2470976 2470975 CCGAGTTTCCCGTCC CACGCCC GTG GGGCCTG TTTTGCCGCGCATTC Daro_2287 2470942 - 2471520 + | hypothetical protein Daro_2288 2471584 - 2471841 + | hypothetical protein TERM 2309 2472134 - 2472148 + G 82 -11.4 -3.90744 | AGCCTGATGGAGGCC CTGGCC GCC GGCCAG TTGTTTACCCCGCCG Daro_2289 2471852 - 2472181 + | hypothetical protein Daro_2290 2472242 - 2473882 + | ATP-binding region, ATPase-like Daro_2291 2473869 - 2474879 + | hypothetical protein TERM 2310 2474889 - 2474918 + F 91 -11.3 -4.07885 | opp_overlap 2474892, overlap 2474913 2474914 2474915 GCATGAATGTTTGAT GAAGGGTGCGGCC AGTC GGCTGCACCCGCC TTTTCAGCGGCACTG TERM 2311 2474915 - 2474892 - f 89 -13.8 -3.15579 | opp_overlap 2474889 2474913 2474914 TGAATGTTTGATGAA GGGTGCGGCC AGTC GGCTGCACCC GCCTTTTCAGCGGCA TERM 2312 2474913 - 2474961 + F 75 -6.6 -4.41616 | opp_overlap 2474892, overlap 2474889 2474914 2474915 GGCCAGTCGGCTGCA CCCGCCTTTTCAGCGGCACTGC ATCAG GCGGTGACGGTGAAAAGGCCCC TTTGTTTGCCCCACT TERM 2313 2474914 - 2474960 + F 70 -10.1 -3.24488 | opp_overlap 2474892, overlap 2474889 2474913 2474915 GCCAGTCGGCTGCAC CCGCCTTTTCAGCGGCACTGC ATCAG GCGGTGACGGTGAAAAGGCCC CTTTGTTTGCCCCAC TERM 2314 2474915 - 2474959 + F 84 -13.6 -2.54371 | overlap 2474889 2474914 2474913 CCAGTCGGCTGCACC CGCCTTTTCAGCGGCACTGC ATCAG GCGGTGACGGTGAAAAGGCC CCTTTGTTTGCCCCA TERM 2315 2475033 - 2475052 + F 76 -9.2 -3.85698 | opp_overlap 2475021, overlap 2475034 ACAGCCCTGGAGTTC CGGCGCGA TTTC TCGCGCCC TTTCTGGACCGGCAA TERM 2316 2475034 - 2475051 + F 78 -12.7 -2.91276 | opp_overlap 2475021, overlap 2475033 CAGCCCTGGAGTTCC GGCGCGA TTTC TCGCGCC CTTTCTGGACCGGCA TERM 2317 2475091 - 2475130 + F 100 -12.8 -5.07652 | gap 1 CCGTCATCGACCCTG GCGGGGATGCGCTTCCCCC GAG GGGTGATGC-CGTCTCCGC TTTTCTTTTCCGAAA Daro_2292 2475157 - 2476221 + | hypothetical protein TERM 2318 2476276 - 2476231 - T 100 -33.5 -4.42386 | opp_overlap 2476233, overlap 2476233 GCCTGATCCAGAAAA TCGTTGAGAGCCGGCCGGGGC CACT GCCCCGGCCGGCTCTCAACTA TTCCAGAACACCGTG TERM 2319 2476233 - 2476274 + T 100 -36.1 -3.01712 | opp_overlap 2476231 2476233 CTGATCCAGAAAATC GTTGAGAGCCGGCCGGGGC CACT GCCCCGGCCGGCTCTCAAC TATTCCAGAACACCG TERM 2320 2476274 - 2476233 - T 100 -36.1 -2.54745 | opp_overlap 2476233, overlap 2476231 CTGATCCAGAAAATC GTTGAGAGCCGGCCGGGGC CACT GCCCCGGCCGGCTCTCAAC TATTCCAGAACACCG Daro_2293 2477197 - 2476388 - | GGDEF TERM 2321 2476958 - 2476946 - G 84 -3.3 -5.24129 | GGCGGCGATAAAAAA CGTGA GTG TCGCG AGTTGTTCGGCATAA Daro_2294 2477364 - 2477606 + | helix-hairpin-helix DNA-binding motif-containing protein TERM 2322 2477614 - 2477626 + T 81 -4.8 -5.11613 | GATCGTAAGTCGGGT GGTC ATTTC GACC TTTTTTGGATCGTCT Daro_2296 2479329 - 2478895 - | hypothetical protein Daro_2297 2480807 - 2479392 - | sensor histidine kinase TERM 2323 2479628 - 2479614 - G 74 -7.1 -4.37658 | AAGGGTGCGATAAAA CGGGT CAAAC ACCCG CTCTCGCTCAGTAAC Daro_2298 2481448 - 2480783 - | two component transcriptional regulator Daro_2299 2482232 - 2481474 - | hypothetical protein TERM 2324 2482196 - 2482181 - G 80 -3.2 -5.1101 | opp_overlap 2482191 TGATGATCCAAAAAA CGAGAG TGAC CTCTGG GACTTTGCTCAGGGC Daro_2300 2482704 - 2482252 - | putative signal peptide protein Daro_2301 2483515 - 2482733 - | hypothetical protein TERM 2325 2483602 - 2483620 + r 74 -7.4 -4.07568 | opp_overlap 2483606 CTCATCATTTGTGAA CCCATCCA ATT TGGATGAG TTTTCCGAAAAGGAC Daro_2302 2484187 - 2483591 - | undecaprenyl-diphosphatase TERM 2326 2484121 - 2484108 - G 78 -2.3 -5.09895 | overlap 2484109 TATTCAGCGAAAAAA GTGGC GATG GCCAG TAGCAGTGTGCTTGG Daro_2303 2484578 - 2484243 - | hypothetical protein Daro_2304 2484997 - 2485341 + | hypothetical protein TERM 2327 2485608 - 2485636 + G 80 -14.5 -3.05844 | opp_overlap 2485611 CTGCCAGTTGCGCAA CCAGGGACTCGCC ACC GGCGAAGCCCTGG TCTTCGCCTACCGCG Daro_2305 2485354 - 2485992 + | hypothetical protein Daro_2306 2486033 - 2487748 + | relaxase Daro_2307 2487750 - 2489657 + | hypothetical protein TERM 2328 2489671 - 2489645 - f 77 -10 -3.64703 | opp_overlap 2489644 2489642 2489645 CCGCGCCCAGGGAAA GGCGACCGCATG ATC CGCGCCGTCGCC GTGTTGTCGTTGCTT Daro_2308 2489654 - 2490277 + | hypothetical protein Daro_2309 2492479 - 2490479 - | hypothetical protein TERM 2329 2491421 - 2491437 + g 90 -5.7 -5.2189 | opp_overlap 2491421 2491422, overlap 2491422 CGCATGTTCGACAAA CCGCGCG ATC TGCGCGA TTTTTTCGTCGTTGG TERM 2330 2491422 - 2491436 + g 71 -9.2 -3.72049 | opp_overlap 2491421 2491422, overlap 2491421 GCATGTTCGACAAAC CGCGCG ATC TGCGCG ATTTTTTCGTCGTTG TERM 2331 2492354 - 2492368 + g 74 -3.4 -4.84527 | overlap 2492347 2492356 CCGAACGGCGCCGCC CGCCGG GTT CCGGTA TTTTTCCTCTATGGC TERM 2332 2492356 - 2492366 + g 71 -8.2 -4.03909 | overlap 2492347 2492354 GAACGGCGCCGCCCG CCGG GTT CCGG TATTTTTCCTCTATG Daro_2310 2493062 - 2493559 + | hypothetical protein TERM 2333 2493697 - 2493713 + F 70 -10.8 -2.77547 | overlap 2493706 2493710 CCCAAACCCTCGCTG CCCGCC TACCC GGCGGG TCGTTCCGGTTTCGT TERM 2334 2493793 - 2493816 + G 82 -15.2 -3.14132 | ACTGGCCGTCCTGGC GACCGCGCCC ACCT GGGCGCGGGC TTGCTGGGAGGAAGC Daro_2311 2493743 - 2494294 + | lytic transglycosylase, catalytic Daro_2312 2494291 - 2494968 + | OmpA/MotB TERM 2335 2495307 - 2495321 + G 71 -5.6 -4.31433 | overlap 2495284 2495282 GGAATCAAAGCCCTG GTCGGC TTC GTCGGC TTTGTTGTCGCCCTC Daro_2313 2495100 - 2495450 + | hypothetical protein Daro_2314 2495481 - 2495780 + | hypothetical protein Daro_2315 2495798 - 2496364 + | plasmid-like conjugative transfer protein TraE Daro_2316 2496351 - 2497226 + | hypothetical protein Daro_2317 2497223 - 2498593 + | TraB pilus assembly TERM 2336 2498914 - 2498902 - g 74 -3.3 -4.74103 | CCGGCAAGGCAAAAA GCCCC GAT GAAGC GCCTCAGAAATACCA TERM 2337 2499258 - 2499214 - g 72 -12.1 -3.02263 | gap 1 ACAGTCTGCTCAACA CCGGCGCC-GCCTGCGACCA CCCGAT CGGTCGCAACCTGGCGCTGG CCCGCCAACTCGGCG Daro_2318 2498580 - 2499398 + | periplasmic thiol:disulfide interchange protein Daro_2319 2499395 - 2499976 + | hypothetical protein TERM 2338 2502512 - 2502464 - g 77 -11.8 -3.67498 | gap 2 CAAGTTGGAAGACAA CGCCCCGATCGATGAATTGCGCGC CCA GGGC-CTATCCATCGA-CGAGGCG ATCAGCGAACTGCTG Daro_2320 2499984 - 2502551 + | hypothetical protein TERM 2339 2502765 - 2502752 - g 75 -2.3 -4.88736 | GATGACCGACAAAAA GCCCT GTTC ATGGC GCGAAGCTTTGCCCA Daro_2321 2502548 - 2502916 + | hypothetical protein Daro_2322 2502913 - 2503509 + | hypothetical protein TERM 2340 2503876 - 2503847 - g 73 -10.8 -3.61398 | gap 1 GCCGGGCGCGAACAA CTCG-CCGGACAG ATCCA CTGTCCGGGCAAG GCCGCACGATGAAAC Daro_2323 2503520 - 2503888 + | hypothetical protein TERM 2341 2504245 - 2504274 + G 81 -7.8 -4.65895 | overlap 2504250 CGCAAGAACCCGCTG GAGGTGGTGTCG CTGTCC CGACACCTGCTC TTTTTCGATGGGCGC Daro_2324 2503885 - 2504520 + | hypothetical protein Daro_2325 2504517 - 2505545 + | hypothetical protein Daro_2326 2505532 - 2506290 + | hypothetical protein Daro_2327 2506291 - 2508405 + | conjugal transfer mating pair stabilization protein TraN Daro_2328 2508402 - 2508776 + | hypothetical protein Daro_2329 2508785 - 2509648 + | hypothetical protein Daro_2330 2509645 - 2511093 + | hypothetical protein TERM 2342 2511219 - 2511237 + G 74 -6.6 -4.29656 | opp_overlap 2511184 GGGCGACTACGCCGC TGCCCTGG CTG CCGTGGCA TTTTGCGGTTTTGTG Daro_2331 2511127 - 2513898 + | hypothetical protein Daro_2332 2514222 - 2513899 - | hypothetical protein Daro_2333 2515244 - 2514300 - | hypothetical protein Daro_2334 2516320 - 2515241 - | hypothetical protein Daro_2335 2517126 - 2516317 - | hypothetical protein Daro_2336 2518416 - 2517136 - | Phage integrase guaA 2520273 - 2518639 - | bifunctional GMP synthase/glutamine amidotransferase protein TERM 2343 2519276 - 2519299 + g 72 -2.2 -4.74103 | overlap 2519284 TAGATCGTGCCCTGG GCCAGCCACT TGGC AGCGGCAAGC TTTTTGGATTCAACC TERM 2344 2520315 - 2520295 - R 100 -14 -4.41494 | GACCTTGAATGAAAA GGGCGGCT ACCGG AGCCGCCC CTCTGGGACACAGGA Daro_2338 2521798 - 2520335 - | inosine-5'-monophosphate dehydrogenase TERM 2345 2522148 - 2522134 - g 73 -4.9 -4.62069 | TTTCGAGTTCAAAAA GCGCC AACAG GACGC CAAGGAAAAAGCCGA TERM 2346 2522246 - 2522218 - g 71 -7.3 -4.1585 | GGATAACTGTGAAAA CTCCCGTCGCAAC CTG GCTGCGCTGGAAG CCAACCAGCCGATGG Daro_2339 2521862 - 2522362 + | hypothetical protein TERM 2347 2522386 - 2522406 + T 100 -11.8 -5.16237 | GCGTTAACTCTCGGC GGCGTCGG AATCA CCGGCGCC TTTTTTCATGACCTT Daro_2340 2522700 - 2522374 - | hypothetical protein Daro_2341 2523136 - 2522693 - | cyclase/dehydrase TERM 2348 2523584 - 2523564 - g 73 -4.6 -4.66833 | overlap 2523565 GGCCAAGGGCAAAAA GCAGCACG ACAAA CGTGCCGA CGAACTGGACAAGGA smpB 2523196 - 2523645 + | SsrA-binding protein Daro_2343 2523753 - 2524388 + | two component LuxR family transcriptional regulator Daro_2344 2524775 - 2524404 - | hypothetical protein TERM 2349 2524946 - 2524923 - H 100 -11.8 -5.69262 | gap 1, opp_overlap 2524923 CCAGAAAAAGAAAAA GCCCGAAAAGC GGG GCTTT-CGGGC TCTAACAATAATTCT Daro_2345 2525148 - 2526761 + | 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase TERM 2350 2527393 - 2527371 - g 71 -7.6 -4.05788 | TCTCCTGAAATCAAA CTGCCTGGTC ACT GGCCAGCCAG ACTGGGCAATGGTCG queF 2526805 - 2527656 + | 7-cyano-7-deazaguanine reductase Daro_2347 2527689 - 2530271 + | DNA mismatch repair protein Daro_2348 2530268 - 2531233 + | transmembrane protein TERM 2351 2531275 - 2531292 + T 80 -11.3 -3.40775 | opp_overlap 2531275, overlap 2531273 TCGGGGGCAAAAAAA TACCCGC CGCA GCGGGTA TCTTTCCATCCGGCT TERM 2352 2531292 - 2531275 - T 100 -11.3 -5.40072 | opp_overlap 2531273 2531275 TCGGGGGCAAAAAAA TACCCGC CGCA GCGGGTA TCTTTCCATCCGGCT Daro_2349 2531818 - 2531318 - | peptidylprolyl isomerase, FKBP-type fadB 2534174 - 2532039 - | multifunctional fatty acid oxidation complex subunit alpha TERM 2353 2533765 - 2533745 - G 70 -3.9 -4.58395 | overlap 2533747 CGTAGCCGGGAAAAA TTCCCAAAG TAA CCTCGGGTA GGCCAATCTGGGCGT Daro_2351 2535748 - 2534195 - | acyl-CoA synthetase TERM 2354 2535230 - 2535242 + g 82 -9.1 -4.28994 | opp_overlap 2535229 2535230 AGAGGTATAAAGAAT CTGCG CGA CGCAG TTTTCGTCGATGGTA Daro_2352 2536951 - 2535764 - | thiolase Daro_2353 2538124 - 2536988 - | Acyl-CoA dehydrogenase, C-terminal:Acyl-CoA dehydrogenase, central region:Acyl-CoA dehydrogenase, N-terminal Daro_2354 2539046 - 2538246 - | enoyl-CoA hydratase TERM 2355 2538735 - 2538693 - G 71 -7.4 -4.21194 | opp_overlap 2538694, overlap 2538675 2538694 GGCCATCAGCGAAAA CCCGAAGCCGGCCGCGGCGC CAC GCACGGCGGCCAATACCGGC TTGTCCATGCTACGG Daro_2355 2540871 - 2539039 - | AMP-dependent synthetase and ligase Daro_2356 2541677 - 2540868 - | ABC transporter related TERM 2356 2541603 - 2541575 - G 76 -12.5 -3.31792 | CGAGCAGCGCGACAA TCTCTCCCCGC GGCACTT GCAGGGAGAGA CCGCGCAGCACCTGG Daro_2357 2542854 - 2541685 - | extracellular ligand-binding receptor TERM 2357 2541954 - 2541968 + g 71 -5.6 -4.37886 | overlap 2541955 TGGACTGGTACTCCG GCCGCA TCT TGCGGA TTTTGTCCAGCATGG Daro_2358 2543917 - 2542871 - | inner-membrane translocator TERM 2358 2542925 - 2542907 - G 73 -9.5 -3.95378 | CCACAGGTGAAAGAA GCGGCGC ACACG GCGCCAC AGTTCCTGGAGCCCA Daro_2359 2544795 - 2543917 - | inner-membrane translocator Daro_2360 2545633 - 2544797 - | ABC transporter related TERM 2359 2546824 - 2546813 - g 77 -3.6 -4.88067 | AGCGACTTACAAAAA CCAG GTTG CCGG TTGCCGTCATTGGCA Daro_2361 2545927 - 2546934 + | AraC family transcriptional regulator TERM 2360 2547019 - 2547004 - T 100 -11.8 -5.18726 | opp_overlap 2547004 GGGGCATAACAAAAA GGGGCC GCCC GGCCCC TTGTATGCTTGATAG TERM 2361 2547004 - 2547019 + T 85 -11.8 -3.61404 | opp_overlap 2547004 GGGGCATAACAAAAA GGGGCC GCCC GGCCCC TTGTATGCTTGATAG Daro_2362 2547523 - 2547053 - | Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen Daro_2363 2547892 - 2547608 - | cell division protein FtsB TERM 2362 2547718 - 2547743 + g 76 -12.5 -3.32769 | overlap 2547712 AGCCTTGTTTCAAGT CGCGGACTTCG GCAT CGAGGCCCGCG TTCCTGATTTCCAGC eno 2549182 - 2547899 - | phosphopyruvate hydratase Daro_2365 2550092 - 2549256 - | 2-dehydro-3-deoxyphosphooctonate aldolase TERM 2363 2550072 - 2550055 - G 100 -11.3 -5.2189 | GCAATCAGGAAAAAA GGCTGGT CAAG ACCAGCC TCGAAACCGCAGAGC Daro_2366 2551729 - 2550089 - | CTP synthetase TERM 2364 2550256 - 2550281 + g 73 -4.5 -4.65747 | opp_overlap 2550246 ACAGATCGGTACCAG GGGCACGACCG GCGA CGATCAGGCCC TTTTCTTCCAGCTTG TERM 2365 2551573 - 2551555 - G 79 -9.6 -4.2558 | CATCGGTGACGAAAA CCTCTCCA TGC TGGAAAGG ACTCATCGTACCGGG Daro_2367 2551888 - 2552838 + | hypothetical protein TERM 2366 2553899 - 2553884 - g 80 -10.4 -4.11751 | opp_overlap 2553884 AGCAACCGGTTAAAA GCAGGC GATC GCCTGC TCTGCTTTGTACCGG Daro_2368 2552822 - 2553973 + | 3-oxoacyl-(acyl carrier protein) synthase III Daro_2369 2553963 - 2554358 + | hypothetical protein Daro_2370 2554358 - 2555350 + | hypothetical protein Daro_2371 2555350 - 2556261 + | ABC transporter related TERM 2367 2557011 - 2557029 + G 85 -6.6 -4.77438 | TTTCCACCTGATCCT GGCCGGCA AGC TGCTGCCC TTTTTCATCGTCAAT Daro_2372 2556265 - 2557497 + | hypothetical protein Daro_2373 2557494 - 2557763 + | acyl carrier protein Daro_2374 2557760 - 2558839 + | Beta-ketoacyl synthase Daro_2375 2558839 - 2559513 + | hypothetical protein Daro_2376 2559532 - 2560392 + | thioredoxin-related TERM 2368 2561214 - 2561172 - g 86 -13.6 -3.54424 | opp_overlap 2561162, overlap 2561201 CTGGACTGGCCGAAA GGGA-CCGGCTGGTCCTTGC CCGAT GCAAAG-CCAACCGGATCCC CGTCGCCATTGCGAT Daro_2377 2560415 - 2561317 + | histone deacetylase superfamily protein TERM 2369 2562139 - 2562120 - g 74 -12.8 -3.14931 | opp_overlap 2562134 GCGACGCGTCATGAA GGCCGGGC CACC ACCCGGCC TTAACCCGGTCTATG TERM 2370 2563931 - 2563892 - g 78 -2.8 -5.01732 | gap 1, overlap 2563893 AAGCCGTCCAAAAAA TTCAGCAGCATGGCGATAG CGG CT-TCGACGTGGTGCTGAT GGATATCCAGATGCC Daro_2378 2561443 - 2564148 + | PAS TERM 2371 2564374 - 2564388 + G 72 -2.1 -4.72846 | overlap 2564369 TTCGAAGTGGCGCGT CTGTT GCAGA AACGG TTTTTCGATGTCTGC Daro_2379 2564179 - 2565699 + | hypothetical protein Daro_2380 2565708 - 2566571 + | nicotinate-nucleotide pyrophosphorylase [carboxylating] Daro_2381 2567394 - 2566765 - | SAM-dependent methyltransferase TERM 2372 2567151 - 2567166 + g 76 -5.4 -4.72272 | gap 1, overlap 2567150 CCACATGCCGGGCCC GC-GCCA GCT TGGCCGC TTTTTCCTGGGCGAC TERM 2373 2567309 - 2567337 + g 74 -12.5 -3.14344 | opp_overlap 2567303 2567311, overlap 2567311 GCCTGAGAAGCCAGG AACTTGTTCGGCG CCG TGCCGAACAAGTA TTCGTCCCCCACATC TERM 2374 2567335 - 2567311 - G 82 -14.4 -3.23711 | opp_overlap 2567311 2567309, overlap 2567303 CTGAGAAGCCAGGAA CTTGTTCGGC GCCGT GCCGAACAAG TATTCGTCCCCCACA TERM 2375 2567311 - 2567335 + g 82 -15.1 -3.13403 | opp_overlap 2567303 2567311, overlap 2567309 CTGAGAAGCCAGGAA CTTGTTCGGCG CCG TGCCGAACAAG TATTCGTCCCCCACA Daro_2382 2568818 - 2567391 - | threonine synthase Daro_2383 2569927 - 2568851 - | hypothetical protein TERM 2376 2569005 - 2568983 - G 76 -9.8 -3.7282 | opp_overlap 2568986, overlap 2568986 2568999 TGAGGCGAGGAACAA CAAGCCGCGC CAA GCACCGCTTG CCGCCAGCTTCTGGC TERM 2377 2569125 - 2569112 - G 78 -2.3 -5.10208 | overlap 2569113 CAAGGGCAACAAAAA CCCGG CCCC CCAAG CCAGCAAAGACGGGC TERM 2378 2569937 - 2569919 - G 72 -12.4 -3.07935 | ACCCCAGCCACGCAA CGCCAGCA TGG CGCTGGCG ATCAATGAAAACAGG Daro_2384 2570251 - 2569976 - | hypothetical protein TERM 2379 2570408 - 2570421 + r 85 -3.1 -5.32699 | gap 1 TTGCCGGACTGGCGC GC-CTG ATC CAGTGC TTTTTTGATCTTTGA Daro_2385 2571459 - 2570383 - | rhomboid-like protein TERM 2380 2571569 - 2571551 - R 100 -12.4 -5.1356 | opp_overlap 2571551 TCGCATCAATAAAAA CGGGAGCC CGT AGCTCCCG TTTCAGTGCCTTGGA TERM 2381 2571551 - 2571569 + r 85 -11.7 -3.68619 | opp_overlap 2571551 TCGCATCAATAAAAA CGGGAGC CCGTA GCTCCCG TTTCAGTGCCTTGGA Daro_2386 2572905 - 2571595 - | homoserine dehydrogenase Daro_2387 2574152 - 2572908 - | aminotransferase AlaT Daro_2388 2574215 - 2574631 + | hypothetical protein Daro_2389 2576071 - 2574632 - | mannose-1-phosphate guanylyltransferase (GDP) TERM 2382 2575660 - 2575672 + g 71 -7.7 -4.11484 | opp_overlap 2575651 AAGTAACGGCATATC CTTGC TCA GCAAG TTTTACCGCGTTGGC Daro_2390 2576913 - 2576116 - | hypothetical protein TERM 2383 2577172 - 2577154 - g 76 -6 -4.63527 | overlap 2577164 2577168 CGACCAGCGGAAAAA TCTTCATC AAC GAAGAAGA CGTCTCCGAAAAATC TERM 2384 2577205 - 2577186 - g 70 -4.2 -4.57073 | GACGTCTCCGAAAAA TCGGCCAA CGAA CTGGCTGA CATCCGCTCCCATTC Daro_2391 2576964 - 2577725 + | ABC transporter related Daro_2392 2577747 - 2579108 + | hypothetical protein TERM 2385 2579527 - 2579495 - T 77 -7.1 -4.56597 | gap 2, opp_overlap 2579523, overlap 2579498 GCTGGCCTCCAAAAA GAATCCCCACTCAGC TTACC GCTG-GCGGGGA-TC AGGCTGACCCATCTT TERM 2386 2579525 - 2579498 - T 90 -9.9 -4.40561 | gap 1, opp_overlap 2579523, overlap 2579495 GGCCTCCAAAAAGAA TCCCCACTCAGC TTACC GCTG-GCGGGGA TCAGGCTGACCCATC TERM 2387 2579568 - 2579548 - T 100 -14.7 -3.89822 | opp_overlap 2579548 2579547 GACCCATCTTATAAA CCCCCACGC AGG GCGTGAGGG GGTTTAAGGCTCATG TERM 2388 2579548 - 2579569 + T 77 -12.3 -2.74792 | gap 1, opp_overlap 2579548, overlap 2579547 GACCCATCTTATAAA CCCC-CACGC AGG GCGTGAGGGG GTTTAAGGCTCATGG Daro_2393 2580536 - 2579610 - | hypothetical protein TERM 2389 2579931 - 2579911 - G 74 -3.9 -4.78848 | overlap 2579913 TCCTTAAAGATAAAA TCGTATGCC CCA GGCGTACCA GGCAAACCGAGCAAC Daro_2394 2580680 - 2581900 + | hypothetical protein TERM 2390 2582014 - 2582024 + G 100 -5.4 -5.78622 | CCTGGGAGGCGGCTT TGTC CGG GACA TTTTTTTTCAACTCG Daro_2395 2581907 - 2583121 + | hypothetical protein Daro_2396 2583181 - 2584053 + | hypothetical protein Daro_2397 2584221 - 2584844 + | polysaccharide export protein TERM 2391 2584866 - 2584895 + F 100 -15.7 -4.06892 | opp_overlap 2584865 2584868, overlap 2584870 GTCGTTACTCAATAC CATCCGCTCGGCC ATTT GGCCGAGCGTGTG TTTGTCTGGACTTCT TERM 2392 2584870 - 2584891 + F 100 -17.3 -3.38294 | opp_overlap 2584868 2584865, overlap 2584866 TTACTCAATACCATC CGCTCGGCC ATTT GGCCGAGCG TGTGTTTGTCTGGAC Daro_2398 2585030 - 2586472 + | lipopolysaccharide biosynthesis TERM 2393 2586879 - 2586900 + G 84 -5.8 -4.95155 | opp_overlap 2586877, overlap 2586881 TCATGGTGACAAGCG CGCTTCCC GGTGAG GGGAAGAG TTTTTCTGCTATCAA Daro_2399 2586482 - 2587453 + | exopolysaccharide biosynthesis protein Daro_2400 2587443 - 2589014 + | hypothetical protein Daro_2401 2589019 - 2590095 + | ATPas Daro_2402 2590088 - 2591260 + | UDP-N-acetylglucosamine 2-epimerase Daro_2403 2591263 - 2592102 + | polysaccharide deacetylase TERM 2394 2592294 - 2592270 - g 70 -3.6 -4.64676 | gap 1 TTATGCCGAAGAAAA TGGCGAAATCG TCGG CGTTTT-GCCA CTGGCGCAGATCAAT Daro_2404 2592106 - 2593140 + | hypothetical protein Daro_2405 2593147 - 2594367 + | glycosyl transferase, group 1 TERM 2395 2595227 - 2595263 + G 86 -14.6 -3.33815 | gap 1, opp_overlap 2595234, overlap 2595234 TACCTCGCCCACTAC GGCTA-AATCAGGCTGG CTAG CCAGCCTGATTATCGCC TTGCTTGCAGCAGCT TERM 2396 2595234 - 2595255 + G 86 -14.5 -3.38178 | opp_overlap 2595234, overlap 2595227 CCCACTACGGCTAAA TCAGGCTGG CTAG CCAGCCTGA TTATCGCCTTGCTTG TERM 2397 2595255 - 2595234 - g 90 -14.5 -3.58343 | opp_overlap 2595234 2595227 CCCACTACGGCTAAA TCAGGCTGG CTAG CCAGCCTGA TTATCGCCTTGCTTG Daro_2406 2594358 - 2595875 + | hypothetical protein Daro_2407 2595872 - 2597035 + | glycosyl transferase, group 1 Daro_2408 2597047 - 2598954 + | asparagine synthase, glutamine-hydrolyzing TERM 2398 2599996 - 2599975 - g 81 -5.8 -4.81212 | TGGAGCACAATAAAA CCGGCATT CTGTTC AAAGCCGG CGATCGCGACGCACT TERM 2399 2600129 - 2600095 - g 71 -8.7 -3.72695 | opp_overlap 2600102, overlap 2600097 ATTTTGTTGAGGAAA TACGTAATTGGCC TAACAGCGT GGCCAATTACGTC ACACCATACAGTCAG TERM 2400 2600127 - 2600097 - g 74 -11.3 -3.44848 | opp_overlap 2600102, overlap 2600095 TTTGTTGAGGAAATA CGTAATTGGCC TAACAGCGT GGCCAATTACG TCACACCATACAGTC Daro_2409 2598951 - 2600171 + | glycosyl transferase, group 1 Daro_2410 2600168 - 2601274 + | glycosyl transferase, group 1 Daro_2411 2601271 - 2602626 + | capsular polysaccharide biosynthesis protein CapK TERM 2401 2602950 - 2602974 + G 71 -7.2 -4.20918 | opp_overlap 2602951, overlap 2602951 TTTGCAGTGGAGCAA AGTCATGAAG ATCTA CTTCATGACC TTTATTGCGCTTGCG TERM 2402 2602973 - 2602951 - g 76 -10.7 -3.74693 | opp_overlap 2602951 2602950 TTGCAGTGGAGCAAA GTCATGAAG ATCTA CTTCATGAC CTTTATTGCGCTTGC Daro_2412 2602636 - 2603970 + | hypothetical protein TERM 2403 2605283 - 2605297 + G 71 -6.4 -4.24342 | opp_overlap 2605283, overlap 2605279 ATTGCGAATGCTAAA GGCGAT TGG ATTGCC TTTGTTGATGCCGAC TERM 2404 2605736 - 2605712 - g 95 -5 -5.67967 | AGCATTACAAAAAAA GCGCCTGATA CAAAT TACCAAGCAC TCGTCATTGTTCGTG Daro_2413 2603975 - 2605993 + | glycosyl transferase family polysaccharide deacetylase TERM 2405 2606203 - 2606193 - g 100 -3.2 -5.8187 | CATTCAAGAAAAAAA CCTC ACT GAAG CACACATTCGCACTG Daro_2414 2605990 - 2607468 + | polysaccharide biosynthesis protein Daro_2415 2607471 - 2608334 + | hypothetical protein Daro_2416 2608376 - 2609551 + | glycosyl transferase, group 1 Daro_2417 2609600 - 2610382 + | hypothetical protein Daro_2418 2610894 - 2612060 + | glycosyltransferase-like protein TERM 2406 2612108 - 2612123 + F 81 -4.6 -5.16237 | opp_overlap 2612093 GACTCAGCCTGGAAT GCAGGA AAAG TCCGGC TTTTTTCGTAGCATT TERM 2407 2613200 - 2613236 + G 70 -3.7 -4.61633 | gap 1 GCCTGGCTGGCGAAG TGTTTGCTGCCCCAGC GCTCTA GCTGAGGCCG-AGACA TTTTTCAGAATATCT Daro_2419 2612198 - 2613226 + | acyltransferase 3 Daro_2420 2614513 - 2613314 - | hypothetical protein TERM 2408 2614574 - 2614539 - R 77 -8.4 -4.1347 | CTGGAAGTATAGAAA TTCAGTTGCGCGATTA AGGC TAAATACGCAACTGAA GAAACCGATGGTGAG Daro_2421 2616101 - 2614518 - | membrane bound O-acyl transferase, MBOAT TERM 2409 2614953 - 2614940 - G 75 -2.3 -4.91109 | overlap 2614941 CGGTCACCACAAAAA GCGTG AGGG CACGG CACACAAAAATACAG TERM 2410 2616011 - 2615995 - G 100 -2.1 -5.86332 | GCAAGGGAAAAAAAA CCTGCAA AAA CCGCCGG CAGAAAAGCAAATAT Daro_2422 2616338 - 2617066 + | TPR repeat-containing protein Daro_2423 2618578 - 2617085 - | hypothetical protein Daro_2424 2618825 - 2619094 + | transposase IS3/IS911 Daro_2425 2619121 - 2619951 + | integrase catalytic subunit TERM 2411 2619988 - 2619961 - T 73 -9.2 -3.62096 | overlap 2619980 CTTTAGCAGTGCAAA CCAAGGACTTTT ACTA AAACGCCCTTGG CACTAAATCCGGGGG Daro_2427 2621493 - 2620417 - | acyltransferase 3 TERM 2412 2621046 - 2621062 + g 71 -6.5 -4.24342 | opp_overlap 2621042 2621046, overlap 2621047 TCGCCTCAAAACTCA GGGACCA ATA TGGTCCA TTTGTTCCTGGCGAA TERM 2413 2621141 - 2621165 + g 78 -2.7 -5.1523 | opp_overlap 2621144, overlap 2621146 GATATATAGCCCGAC CAACTCTCCGG CCT CCAGAGTATTG TTTTTATATTATAAA Daro_2428 2623432 - 2621765 - | asparagine synthase (glutamine-hydrolysing) Daro_2429 2626828 - 2623559 - | hypothetical protein Daro_2430 2627737 - 2626880 - | esterase/lipase/thioesterase family protein TERM 2414 2627122 - 2627137 + g 80 -4 -5.0538 | overlap 2627123 GGCCTCTCGCCATTT TTTCCT GAAA AGGAAG TTTTTTGCCATCAAC Daro_2431 2628564 - 2627734 - | esterase/lipase/thioesterase family protein TERM 2415 2628389 - 2628420 + g 76 -6.5 -4.47183 | gap 1, overlap 2628392 CCAAGTTTGGCCATT TCC-CGCGCTTGGC ATGCA GCCATGCGCCTGGA TTTGTTTAGCTCCTC Daro_2432 2629494 - 2628745 - | hypothetical protein Daro_2433 2629856 - 2629584 - | hypothetical protein TERM 2416 2630172 - 2630191 + G 72 -2.7 -4.84359 | overlap 2630173 TATTTCCAGCTTTGG TGCCCCC GCTGCA GGTGGCG TTTTTGTGCCGCTGA Daro_2434 2629888 - 2631549 + | AMP-dependent synthetase and ligase Daro_2435 2631539 - 2632777 + | Orn/DAP/Arg decarboxylase 2 Daro_2436 2633141 - 2634523 + | sugar transferase TERM 2417 2635934 - 2635952 + G 88 -6.6 -5.00884 | overlap 2635937 ATCTGTTACGCACAG CCGGCTGC CAA GCAGCTAG TTTTTTGGCCAAGAT TERM 2418 2636373 - 2636361 - g 71 -5.5 -4.38154 | ACATCTGGCACAAAA CGCAC TTG ATGCG ACCCCAATCGAAGGC Daro_2437 2634565 - 2636679 + | sensor histidine kinase TERM 2419 2637356 - 2637345 - g 70 -3.6 -4.72272 | overlap 2637322 TTCGGCTACGAAAAA GGCG CATT CACC GGTGCAGCCAAGACC Daro_2438 2636676 - 2638031 + | helix-turn-helix, Fis-type TERM 2420 2638456 - 2638476 + G 72 -11.2 -3.38316 | GGGAATCTCTTGCTG CGCTCAAG ACGAC CTTGAGCG TTGCTTACCTCATCC TERM 2421 2638843 - 2638806 - g 71 -7 -4.23674 | opp_overlap 2638818 TTCCAGCAACAGAAA TTCGACGAGGCATCCA CCCAGT TGGATGCCTTGAGGAA AATTGCGCCGAAACA TERM 2422 2639649 - 2639637 - g 88 -4.1 -5.48825 | GACGACGCAAAAAAA CGCTT TGA AAACG TACTCCTTGCCGACC TERM 2423 2639844 - 2639834 - g 75 -2.4 -4.91573 | overlap 2639825 2639827 AAAAGAGACCAAAAA GGCC TTG GGCG CTGCGAATGACGCCG TERM 2424 2640192 - 2640171 - g 74 -3.7 -4.74453 | gap 1, opp_overlap 2640178 CAACAGATTGAAAAA CAAC-GCCCC AAG GAAGCCGTTG GTTTTGCGCTAGAAG TERM 2425 2640770 - 2640744 - g 89 -5 -5.24129 | overlap 2640746 2640747 GCCGGCGAGAAAAAA GAGGCCCGCAAG GAG CTTGAGGCCCTT GCGAAGCTAGGCGAC TERM 2426 2640768 - 2640746 - g 75 -7.6 -4.25873 | overlap 2640744 2640747 CGGCGAGAAAAAAGA GGCCCGCAAG GAG CTTGAGGCCC TTGCGAAGCTAGGCG Daro_2439 2638062 - 2640833 + | TPR repeat-containing protein Daro_2440 2640871 - 2642151 + | UDP-glucose/GDP-mannose dehydrogenase:6-phosphogluconate dehydrogenase, NAD-binding Daro_2441 2642153 - 2643055 + | lytic transglycosylase, catalytic Daro_2442 2643058 - 2643837 + | peptidase S1 and S6, chymotrypsin/Hap TERM 2427 2644112 - 2644102 - g 71 -6.8 -4.1964 | opp_overlap 2644101 2644103 2644109 2644111, overlap 2644081 2644103 CGCAACATCCTAAAA GCTG CGA CAGC AGTTCCTGCTATTTT Daro_2443 2644021 - 2644575 + | hypothetical protein Daro_2444 2644584 - 2644850 + | hypothetical protein Daro_2445 2644847 - 2645788 + | HPr kinase TERM 2428 2645969 - 2645948 - g 75 -8.1 -4.26903 | GCTATGCGAGCAAAA GGATATTTG GGCC CAAATACCC CCTCCCGTTCAAGGA TERM 2429 2646482 - 2646493 + G 71 -5.8 -4.4017 | TTCAGAACTGAGTGG TCGC TTGC GCGA TTTTGTCGACATTGA Daro_2446 2645781 - 2646875 + | hypothetical protein Daro_2447 2647294 - 2647719 + | hypothetical protein TERM 2430 2647769 - 2647786 + T 100 -14.1 -4.74103 | opp_overlap 2647721 2647769 GGCAGCACAAAAAAA GGGCGCC TTTC GGCGCCC TTTTTGCGTTCAGAC TERM 2431 2647786 - 2647769 - T 100 -14.1 -5.67063 | opp_overlap 2647769, overlap 2647721 GGCAGCACAAAAAAA GGGCGCC TTTC GGCGCCC TTTTTGCGTTCAGAC Daro_2448 2649958 - 2647811 - | polynucleotide phosphorylase/polyadenylase TERM 2432 2649353 - 2649343 - G 70 -4.6 -4.56597 | CGGTGTGGCCAAAAA CGAC GGC GCCG AGCATGACCTCTTCG TERM 2433 2650044 - 2650071 + r 76 -11.2 -3.37522 | opp_overlap 2650046, overlap 2650046 GCAACAAAAACAAAA AAGCGGCCGGGA GATT TCCGGGCCGCTC TTCCTTCGCTACGGT TERM 2434 2650069 - 2650046 - R 100 -13.8 -6.01725 | opp_overlap 2650046 2650044 AACAAAAACAAAAAA GCGGCCGGGA GATT TCCGGGCCGC TCTTCCTTCGCTACG TERM 2435 2650046 - 2650069 + r 89 -13.8 -3.25652 | opp_overlap 2650046, overlap 2650044 AACAAAAACAAAAAA GCGGCCGGGA GATT TCCGGGCCGC TCTTCCTTCGCTACG Daro_2449 2650361 - 2650092 - | SSU ribosomal protein S15P TERM 2436 2650443 - 2650427 - R 77 -8.7 -4.07568 | CGCCCGTTGGGAAAA TTCCGCC AAA GACGGAA AGTAAAAGATTATAA Daro_2450 2651362 - 2650463 - | tRNA pseudouridine synthase B TERM 2437 2650893 - 2650881 - G 70 -3.4 -4.652 | AAATCACCGGAAAAA TCGA GGCAA TCGA TGGCAAAAATAGTAA Daro_2451 2651741 - 2651370 - | ribosome-binding factor A TERM 2438 2651476 - 2651464 - G 70 -3.3 -4.60797 | CTGTCATATACAAAA TGCAG CTC CGGCA AGGTATGTATATGGA infB 2654455 - 2651741 - | translation initiation factor IF-2 nusA 2655944 - 2654472 - | transcription elongation factor NusA Daro_2454 2656406 - 2655966 - | hypothetical protein TERM 2439 2656437 - 2656423 - R 100 -11.4 -5.72622 | GCCACAAATAAAAAA TGGGCG AAA CGCCCA CATCACAATAAAAAG TERM 2440 2656517 - 2656467 - R 72 -7.7 -3.86015 | gap 1, opp_overlap 2656470, overlap 2656455 2656470 GATGCCCGCCAGAAA CGAC-GGGAGGAACAAACCCGTGA ATTA TAACGAGTTTATTCCCCCCAGTAA ATCGATTTACGTGCC TERM 2441 2656513 - 2656470 - R 87 -14 -3.00946 | opp_overlap 2656470, overlap 2656455 2656467 GCCCGCCAGAAACGA CGGGAGGAACAAACCCGTGA ATTA TAACGAGTTTATTCCCCCCA GTAAATCGATTTACG Daro_2455 2657546 - 2656524 - | ribosomal large subunit pseudouridine synthase B TERM 2442 2657352 - 2657370 + g 73 -8.8 -3.85698 | ACGATTGGCTCTTCC GCCGGTAT TGG GTGCCGGC TTTCTGCGCGGCGCA Daro_2456 2658079 - 2657543 - | condensin subunit ScpB TERM 2443 2657867 - 2657907 + gr 93 -15.3 -2.52464 | GATGTACGGCAGGTA TTCGGCCCGCGTCCGGAAG CGC CAGCCGGACGCGAGCTGGA TCAGTTCGACCGGCC Daro_2457 2658899 - 2658048 - | condensin subunit ScpA Daro_2458 2659191 - 2658901 - | Lipid A biosynthesis, N-terminal TERM 2444 2659004 - 2658991 - G 70 -3.1 -4.64861 | gap 1, overlap 2658993 CTGCCCGAAAATAAA GACAGG ATC CCTG-C GGTGAATTGCATAGA Daro_2459 2660393 - 2659191 - | tryptophanyl-tRNA synthetase Daro_2460 2661054 - 2660401 - | peptidase M50 Daro_2461 2661688 - 2661062 - | Sua5/YciO/YrdC/YwlC TERM 2445 2661331 - 2661296 - G 89 -15.4 -3.3482 | gap 1, opp_overlap 2661294 2661293 2661324 CAACTCTTCAAGCAA GGCCAGCGCG-ACCGGA TGA TCCGGCACACGCAGGCC GATGGTCTTGCGTTT Daro_2462 2662577 - 2661690 - | PHP, C-terminal TERM 2446 2662805 - 2662854 + H 100 -20.3 -2.92475 | opp_overlap 2662811 2662820, overlap 2662811 CTCTCAGGTATCGAG GACAGAGGGGTGAAACGCAAGAT GTGT ATCTTTCGTTTCACCCCTTTTTC GTTTCTAGAACTGGC TERM 2447 2662811 - 2662848 + H 100 -20.1 -5.04601 | opp_overlap 2662811 2662820, overlap 2662805 GGTATCGAGGACAGA GGGGTGAAACGCAAGAT GTGT ATCTTTCGTTTCACCCC TTTTTCGTTTCTAGA TERM 2448 2662848 - 2662811 - H 100 -20.1 -2.95298 | opp_overlap 2662811 2662805, overlap 2662820 GGTATCGAGGACAGA GGGGTGAAACGCAAGAT GTGT ATCTTTCGTTTCACCCC TTTTTCGTTTCTAGA Daro_2463 2662897 - 2663988 + | aminomethyltransferase Daro_2464 2664012 - 2664398 + | glycine cleavage system H protein TERM 2449 2664477 - 2664494 + F 77 -12.7 -2.75826 | opp_overlap 2664477, overlap 2664474 CATCAAATCAGTGAA TCCCCGC CTGG GCGGGGA TGATGTATTCAAGTA TERM 2450 2664494 - 2664477 - f 81 -12.7 -3.17054 | opp_overlap 2664474 2664477 CATCAAATCAGTGAA TCCCCGC CTGG GCGGGGA TGATGTATTCAAGTA TERM 2451 2666914 - 2666875 - g 73 -10.8 -3.61398 | gap 1 CGCCGGCGTCAAGAA GGCGACGCAGGTTGCCATC CTC AACGCCAAC-TACGTCGCC AAGCAGCTCAACGCG Daro_2465 2664530 - 2667421 + | glycine dehydrogenase Daro_2466 2667421 - 2667963 + | hypothetical protein Daro_2467 2668980 - 2667973 - | DnaJ central region:heat shock protein DnaJ, N-terminal:chaperone DnaJ, C-terminal Daro_2468 2669904 - 2668984 - | arginase TERM 2452 2669833 - 2669782 - G 76 -10.8 -3.84246 | CTGCGAATGATGAAA CGCCACCGGCC-CGTCCTCGCAAG CCTGAT CCTGCGCGC-CGAGGCCGCTGGCG GCGCCGATGATGCGA Daro_2469 2670576 - 2669935 - | hypothetical protein Daro_2470 2671222 - 2670569 - | 3'-5' exonuclease Daro_2471 2671303 - 2671557 + | hypothetical protein TERM 2453 2671790 - 2671778 - g 70 -4.7 -4.56775 | overlap 2671764 AGCGCCGCCGAAAAA CAGCG CTA CGCGG CCACGCTTCAGGCCG Daro_2472 2671550 - 2671810 + | excinuclease ABC subunit C Daro_2473 2673165 - 2671798 - | heavy metal sensor kinase Daro_2474 2673839 - 2673168 - | heavy metal response regulator Daro_2475 2674463 - 2673891 - | hypothetical protein TERM 2454 2673977 - 2673966 - G 72 -2.2 -4.75174 | gap 1 CATGGAATGGAAAAA CAGCC CGC GGC-G AATCCCCTGCACACG TERM 2455 2674311 - 2674279 - G 85 -6.1 -5.14563 | overlap 2674281 2674296 CCGGGGATCAAAAAA CAGGCGAGCGCCACA TAG CGTGGGGCCCGTCCA ATCCACGCTTCGACA TERM 2456 2674309 - 2674281 - G 79 -8.7 -4.20707 | overlap 2674279 2674296 GGGGATCAAAAAACA GGCGAGCGCCACA TAG CGTGGGGCCCGTC CAATCCACGCTTCGA TERM 2457 2674359 - 2674328 - G 72 -11.6 -3.29511 | gap 1, opp_overlap 2674337 2674338 TCCACGCTTCGACAA GGCGCAACACCGGCC ACT GGCCGATTTT-CGCC ATGACGCGTTCCAGC TERM 2458 2674528 - 2674564 + H 79 -4.3 -5.00846 | overlap 2674530 CCCCATCGTAATCAG CGTGACCGGATGTAACG GGG CGTTACGCCTGATCGAG TTTTTGTAATGTTTA TERM 2459 2674925 - 2674945 + G 84 -5.3 -4.87786 | TTCCGCCCTTCACCC TGATGGGGG TCG CCCTCGCCA TTTTTCTCGGCTTCC Daro_2476 2674744 - 2675664 + | hypothetical protein Daro_2477 2675770 - 2676087 + | hypothetical protein TERM 2460 2676697 - 2676710 + G 71 -6.7 -4.25104 | CATGGAAAGCGAGTT CCATC ACCT GATGG TTTTCATCAACGCCA TERM 2461 2677001 - 2676985 - g 70 -10.1 -3.51708 | GATGCTGGAAATGAA CCTGCCG CTG CAGCAGG GAACGCGACGCAGTC Daro_2478 2676095 - 2677345 + | Outer membrane efflux protein TERM 2462 2677465 - 2677430 - g 71 -5.5 -4.36914 | gap 3, opp_overlap 2677389, overlap 2677434 TTGCCCGGCAGAAAA CCGATGGCACGACCGCAG TTG CTGCGGTC--ACC-CCGG AAAAAGCGCCAAACA TERM 2463 2678102 - 2678067 - g 77 -3.9 -4.87665 | gap 1, opp_overlap 2678067 2678068, overlap 2678068 CGTCACCGAGAAAAA GGCTGTGCAGGGCATG CGCTT CATGCCCGGCG-AGGC GTTGTACCAGATCGC TERM 2464 2678126 - 2678149 + G 80 -14.6 -3.01712 | AGATCGCCGATACCT CGTCGGTCTG GGTC CAGGCCGACG TCTTCGAGCAGGACA Daro_2479 2677342 - 2678856 + | secretion protein HlyD Daro_2480 2678864 - 2681998 + | heavy metal efflux pump CzcA Daro_2481 2682348 - 2682019 - | hypothetical protein Daro_2482 2682812 - 2682381 - | hypothetical protein Daro_2483 2683240 - 2682977 - | hypothetical protein TERM 2465 2683122 - 2683107 - G 100 -10.4 -5.76237 | opp_overlap 2683107 GATAGAAACAAAAAA GCACCC CGGA GGGTGC TTGCCTGCTCGTTAT TERM 2466 2683392 - 2683377 - R 74 -6.2 -4.45738 | CAGTGCAAGAACAAA CTTTCT ACTG AGAAAG GACTCAGGACAATTA TERM 2467 2683452 - 2683464 + r 73 -9.1 -3.61398 | TCAATTTATTCTCTT CAGCC TCA GGCTG TTCTTCGGCCAAAGC TERM 2468 2683546 - 2683560 + r 82 -11.4 -3.55444 | opp_overlap 2683545 2683544 2683557 GCTCAATCGATAAGG GCGGTC AAT GACCGC TTTGCGCCATCCGCG Daro_2485 2684635 - 2683811 - | peptidase M24A TERM 2469 2684329 - 2684357 + g 71 -9 -3.77832 | gap 1, opp_overlap 2684312 2684315 AGCCATCCTTGATGA TGGCGACGTCGAT GTTG AT-GATGTCGCCA TTCTTCAATTTCCGG Daro_2486 2684862 - 2684632 - | hypothetical protein Daro_2487 2685185 - 2684901 - | hypothetical protein Daro_2488 2686446 - 2685451 - | phosphate binding protein TERM 2470 2686597 - 2686628 + H 86 -3.8 -5.40873 | gap 1, overlap 2686573 2686569 2686598 2686601 TATGTTTTATATTGC GGC-ATTGCGTTTCA ATA TGAAACGCAATTGAA TTTTATTTTTATATT TERM 2471 2686601 - 2686623 + H 95 -13.6 -3.5268 | overlap 2686569 2686598 2686597 TTTTATATTGCGGCA TTGCGTTTCA ATA TGAAACGCAA TTGAATTTTATTTTT Daro_2489 2686838 - 2687242 + | hypothetical protein TERM 2472 2687943 - 2687959 + G 75 -2.1 -4.87626 | overlap 2687943 TTCCATGACTCTTTT GAAGCGC TGC GCTCTCC TTTTTACTATTGGCC Daro_2490 2687932 - 2689734 + | sensor histidine kinase Daro_2491 2689731 - 2690366 + | LuxR response regulator receiver Daro_2492 2690461 - 2692557 + | cytochrome c, class I TERM 2473 2692589 - 2692606 + T 100 -12.7 -5.87688 | TTAGCACACTGCGAA TGCCCCG GAGA CGGGGCA TTTTTTTTGGGTTGT TERM 2474 2692885 - 2692851 - T 81 -10.6 -3.58536 | opp_overlap 2692850, overlap 2692843 AAAGCGATCGGCAAA GCCGCAGAGCCTCAGA GCC TCAGAGCCTCAACGGC AATTCTCAGCCACAA Daro_2493 2693631 - 2693107 - | hypothetical protein TERM 2475 2693816 - 2693793 - H 95 -15.4 -2.91144 | overlap 2693790 2693795 2693811 GCAGGTTTTAAAGTA GAGCGGTCAT TTAA ATGACCGCTC AGAGAAAGCGATACA TERM 2476 2693814 - 2693795 - H 79 -12.2 -3.00704 | overlap 2693793 2693790 2693811 AGGTTTTAAAGTAGA GCGGTCAT TTAA ATGACCGC TCAGAGAAAGCGATA Daro_2494 2693911 - 2694087 + | hypothetical protein Daro_2495 2695014 - 2694136 - | regulatory protein, LysR:LysR, substrate-binding TERM 2477 2694248 - 2694238 - G 71 -6.8 -4.19678 | overlap 2694239 CGACAGGTTAAGAAA TGGC GTC GCCA ACGGCACCAGCCAAC TERM 2478 2695592 - 2695561 - g 78 -5 -4.77165 | opp_overlap 2695566 2695588, overlap 2695566 2695576 GCGCCTAGAAGAAAA CGACAGCGTCAG GAAGGCAG CGGCCGCCGTCG CCACCGTGGTGCTCT Daro_2496 2695109 - 2696119 + | hypothetical protein TERM 2479 2697420 - 2697393 - g 81 -6.2 -4.74453 | overlap 2697397 2697413 GAAGACATGGAAAAA GCCAGCAGTCTA GTGA TAGACAGCCTGC AACTAATGGCTGACA Daro_2497 2696355 - 2697473 + | methyl-accepting chemotaxis sensory transducer TERM 2480 2697907 - 2697878 - f 80 -11.5 -3.31144 | opp_overlap 2697885, overlap 2697885 CTTTGATGGGTACAA CAAAAAAGCACCC CGGA GGGTGCTTGTCTG CTCGTTATCTGGCGG TERM 2481 2697885 - 2697900 + F 77 -10.4 -3.58133 | opp_overlap 2697885 2697878 GGGTACAACAAAAAA GCACCC CGGA GGGTGC TTGTCTGCTCGTTAT TERM 2482 2697900 - 2697885 - f 100 -10.4 -5.55769 | opp_overlap 2697885, overlap 2697878 GGGTACAACAAAAAA GCACCC CGGA GGGTGC TTGTCTGCTCGTTAT Daro_2498 2698059 - 2699327 + | Phage integrase Daro_2499 2699585 - 2700274 + | resolvase, N-terminal Daro_2500 2701306 - 2700350 - | hypothetical protein Daro_2501 2701426 - 2702133 + | hypothetical protein TERM 2483 2702458 - 2702470 + G 80 -3.3 -5.13722 | overlap 2702457 ACGCAAGACACTGTG CGGAG GAA CTGCG TTTTATTTTGGTCAA Daro_2502 2702243 - 2703295 + | hypothetical protein Daro_2503 2704015 - 2703494 - | hypothetical protein Daro_2504 2704300 - 2704476 + | BRO family protein Daro_2506 2705454 - 2705014 - | hypothetical protein Daro_2508 2706403 - 2705810 - | hypothetical protein Daro_2507 2705548 - 2705934 + | hypothetical protein TERM 2484 2706411 - 2706421 + Tr 77 -6.8 -4.57073 | CGCACCATTTTGTCC CTCC AGA GGAG TTTTTGGGGGAGATC Daro_2509 2706759 - 2706487 - | hypothetical protein TERM 2485 2706794 - 2706827 + H 70 -4.1 -4.72007 | gap 1, opp_overlap 2706794 2706796 2706801, overlap 2706796 2706801 AGCAGAAAGTATCAA CAGGTA-ATACACAAT ACG ATTGTGTATCTATCTA TTTGTTTTGATAGGG Daro_2510 2707200 - 2707724 + | hypothetical protein TERM 2486 2707757 - 2707774 + F 100 -10.5 -4.86621 | TCAACGCACTCCAGA GGCTCCC GACC GGGGGCC TTTTTCATTGGCGCT Daro_2511 2708378 - 2709334 + | hypothetical protein TERM 2487 2709492 - 2709480 - f 81 -6.2 -4.78107 | GATGACCATCAAAAA CGCC ATAGG GGCG GGCCTCCTACGCCGT Daro_2512 2709667 - 2710182 + | hypothetical protein TERM 2488 2710416 - 2710394 - g 89 -9.8 -4.44797 | TGATGAAGATGAAAA GGGTGTGTGC AGT ACGCACACCC TTGGAGGAATCCAGC Daro_2513 2710179 - 2710697 + | BRO, N-terminal Daro_2514 2710694 - 2711008 + | hypothetical protein TERM 2489 2711015 - 2711044 + T 76 -12.8 -2.52543 | opp_overlap 2711015 CGTAAGTAGCAGCAA GCTCGGGGGCCC CTCAGT GGGCCTCTGGGC TGCCTTCCCAAGAAT TERM 2490 2711635 - 2711618 - T 100 -11.3 -5.09521 | opp_overlap 2711610 CCAAGAAAGCAAAAA GCCCTGA ATAA TCAGGGC CTTAAGCATCGTTGA TERM 2491 2711762 - 2711789 + T 72 -8.3 -3.74747 | opp_overlap 2711763, overlap 2711747 2711763 TCCGAACCTTCAACG AGGCGCGGATG ATATAG CCTCCGCGCCC TTTGGTCAAACTTAC TERM 2492 2711788 - 2711763 - T 73 -11.8 -2.73542 | opp_overlap 2711747 2711762 2711763 CCGAACCTTCAACGA GGCGCGGATG ATATAG CCTCCGCGCC CTTTGGTCAAACTTA TERM 2493 2711763 - 2711788 + T 75 -11.8 -2.84527 | opp_overlap 2711763, overlap 2711747 2711762 CCGAACCTTCAACGA GGCGCGGATG ATATAG CCTCCGCGCC CTTTGGTCAAACTTA Daro_2515 2713021 - 2711801 - | aspartate kinase TERM 2494 2712948 - 2712959 + g 72 -2.2 -4.7373 | TGGAACTTGGCAACG CGTT TGGC GACG TTTTTGATGCGCTCG TERM 2495 2713081 - 2713057 - R 76 -4.1 -4.93696 | opp_overlap 2713058 2713059, overlap 2713059 TGGAAACATGAAAAA GAGGGCGGGAT TTT ACCCCACCCGG TTCTTTTTCTAAAGA TERM 2496 2713079 - 2713059 - R 88 -11.1 -4.07993 | opp_overlap 2713058 2713059, overlap 2713057 GAAACATGAAAAAGA GGGCGGGAT TTT ACCCCACCC GGTTCTTTTTCTAAA Daro_2516 2714098 - 2713133 - | histone deacetylase superfamily protein Daro_2517 2714180 - 2715127 + | ATPase TERM 2497 2715203 - 2715217 + G 70 -4.2 -4.56736 | overlap 2715199 CGGCGCCCTTGCGCC TTGGCC AGA GGCGAA TTTTCATTATTCCGT Daro_2518 2715133 - 2716083 + | hypothetical protein Daro_2519 2716080 - 2718017 + | transglutaminase-like TERM 2498 2719026 - 2718990 - g 74 -7.2 -4.30987 | gap 1, overlap 2718991 AGCTGGCAGAAGAAA TCCGCAGCCGGATGTGC GCCA GC-CAACCGGCTACAGC AACGAATCGCGAGAA Daro_2520 2718014 - 2719057 + | lytic murein transglycosylase B Daro_2521 2719949 - 2719020 - | RNA polymerase sigma factor RpoS TERM 2499 2719775 - 2719746 - G 70 -10 -3.53012 | gap 1, opp_overlap 2719744 CTGGCGTGCGCTAAA GTCACCTTCCCGG ACAAG CCGGG-AGGTGGC CAGTTCTTCAGCGGG Daro_2522 2720860 - 2719946 - | peptidoglycan-binding LysM:peptidase M23B Daro_2523 2721507 - 2720857 - | protein-L-isoaspartate(D-aspartate) O-methyltransferase surE 2722256 - 2721516 - | stationary phase survival protein SurE Daro_2525 2722577 - 2722260 - | histone-like nucleoid-structuring protein H-NS TERM 2500 2722683 - 2722637 - RH 95 -14.7 -3.20858 | gap 1, opp_overlap 2722646 2722654, overlap 2722646 2722654 TATTATATTTATCAA CGCCACAAATTAAAAAACCGGC AAAA GCCGGTTATTTAATTTG-GTCG GGGCGGCGGGATTCG TERM 2501 2722675 - 2722646 - RH 93 -12.3 -3.93236 | opp_overlap 2722646 2722654, overlap 2722637 2722654 TATCAACGCCACAAA TTAAAAAACCGGC AAAA GCCGGTTATTTAA TTTGGTCGGGGCGGC TERM 2502 2722646 - 2722675 + rH 91 -12.3 -3.72576 | opp_overlap 2722637 2722646 2722654, overlap 2722654 TATCAACGCCACAAA TTAAAAAACCGGC AAAA GCCGGTTATTTAA TTTGGTCGGGGCGGC TERM 2503 2722654 - 2722667 + rH 82 -9.5 -4.17002 | opp_overlap 2722646 2722637 2722654, overlap 2722646 CCACAAATTAAAAAA CCGGC AAAA GCCGG TTATTTAATTTGGTC TERM 2504 2722667 - 2722654 - RH 100 -9.5 -5.42514 | opp_overlap 2722654 2722646, overlap 2722646 2722637 CCACAAATTAAAAAA CCGGC AAAA GCCGG TTATTTAATTTGGTC Daro_2527 2724812 - 2724288 - | hypothetical protein Daro_2526 2722914 - 2724359 + | Phage integrase Daro_2528 2725786 - 2724821 - | hypothetical protein TERM 2505 2725586 - 2725568 - G 73 -10.2 -3.58208 | opp_overlap 2725570, overlap 2725564 GTCGACAAGAACCAA CACGCGGC CAG GTCGCGTG CTTGCGACCACCACG Daro_2529 2726099 - 2725794 - | hypothetical protein Daro_2530 2727163 - 2726099 - | hypothetical protein Daro_2531 2728302 - 2729501 + | Phage integrase, N-terminal SAM-like TERM 2506 2729561 - 2729533 - T 78 -8.8 -4.19735 | gap 1, opp_overlap 2729533 2729532 CCGTTCAAAACGAAA CGGGGAACTGGGA AACT TCCCCGC-CCCCG CTTTTCCTGCCTTTG Daro_2532 2729791 - 2729585 - | hypothetical protein Daro_2533 2730573 - 2729854 - | hypothetical protein TERM 2507 2729908 - 2729888 - G 87 -16.9 -3.05816 | GCAGCCCGGAGCGAA CCGGCAAGC GCA GCTTGCCGG CGGTCCCCTGGAACG Daro_2534 2730988 - 2730575 - | PilT protein, N-terminal Daro_2535 2731249 - 2730992 - | prevent-host-death protein TERM 2508 2731286 - 2731263 - R 81 -11.2 -3.58522 | opp_overlap 2731267, overlap 2731267 ATGACGACCTCCAAA TAAACTAGTC ACCT GACTAGTTTA TAACCAATTCCTCAC TERM 2509 2731282 - 2731267 - R 78 -7.6 -4.42806 | opp_overlap 2731267, overlap 2731263 CGACCTCCAAATAAA CTAGTC ACCT GACTAG TTTATAACCAATTCC TERM 2510 2731267 - 2731282 + r 72 -7.6 -3.87869 | opp_overlap 2731267 2731263 CGACCTCCAAATAAA CTAGTC ACCT GACTAG TTTATAACCAATTCC Daro_2536 2732154 - 2731339 - | UBA/THIF-type NAD/FAD binding fold TERM 2511 2731405 - 2731431 + g 82 -12.2 -3.60475 | GCGTGCCCAGGTCTT CGGATCGACCTC GAT GGGGCCGGTCCG TTTCGAGTCGAGATT Daro_2537 2732846 - 2732142 - | hypothetical protein Daro_2538 2733583 - 2732843 - | hypothetical protein Daro_2539 2734620 - 2733601 - | hypothetical protein Daro_2540 2735051 - 2734617 - | hypothetical protein Daro_2541 2735617 - 2735138 - | hypothetical protein TERM 2512 2735667 - 2735641 - R 91 -7.4 -5.04249 | gap 1 CCTTCAAAAAAGAAA TGCCTTCG-AG ACCATG CTACGAAGGCA TTGGGGGTTTGCCAG Daro_2542 2737458 - 2735695 - | ParB family protein TERM 2513 2737251 - 2737283 + g 86 -13.3 -3.53811 | opp_overlap 2737245 CGCCGAAGACGTTCT TCGCGGCCCGCCAGC GGC GCTCGCCGGCCACGA TTTCGAACAGATCGG TERM 2514 2737556 - 2737535 - R 70 -3.5 -4.65895 | overlap 2737536 GCCCGGACCGAAAAA CGCCCCCCG CCCC CTCGGGGCA CCCGTCAAGTATTGG Daro_2543 2737806 - 2737561 - | hypothetical protein TERM 2515 2737617 - 2737651 + g 74 -7.1 -4.32034 | gap 1, overlap 2737621 TCATTTCTTCCACCG CCTGCGTGCCCCACTG CAGG CAGTGGGCCA-GCGAG TTTTCATCGTGGTGC Daro_2544 2738383 - 2737808 - | hypothetical protein Daro_2545 2739888 - 2738530 - | hypothetical protein TERM 2516 2740322 - 2740359 + H 100 -9.1 -5.27335 | gap 1, opp_overlap 2740333, overlap 2740313 2740323 CCTTTGCCATCCCGC CGGGGAGCACACCTC-CC CCG GGAGCGGTGTGTTCCTCA TTTTTCTTTGGAGAA TERM 2517 2740323 - 2740358 + H 91 -12.6 -3.75678 | gap 1, opp_overlap 2740333, overlap 2740313 2740322 CTTTGCCATCCCGCC GGGGAGCACACCTC-CC CCG GGAGCGGTGTGTTCCTC ATTTTTCTTTGGAGA TERM 2518 2743424 - 2743409 - g 76 -9 -4.07568 | GGTCCGGCTGGAAAA GCTGTC CGCC GACAGC AAGAAGGACGATCTG TERM 2519 2743637 - 2743585 - g 76 -14.1 -3.01791 | gap 1, opp_overlap 2743594 ACCTCTTCCTGAAGA CGCGCTACACCATGCAGCGCCACG GCAATG CGCAGCGCGGCGTGGTGTT-CGCG ACGGCAACACCGGTG Daro_2546 2740380 - 2745389 + | helicase, C-terminal TERM 2520 2745399 - 2745424 + T 100 -11.1 -4.92385 | overlap 2745400 GCTTGATTAACCTTA CCCCCACGGTC GAAA GACTGTGGGGA TTTTCTTTGGGTATC TERM 2521 2745400 - 2745423 + T 100 -14.6 -3.54346 | overlap 2745399 CTTGATTAACCTTAC CCCCACGGTC GAAA GACTGTGGGG ATTTTCTTTGGGTAT Daro_2547 2746499 - 2745438 - | hypothetical protein TERM 2522 2745526 - 2745540 + g 78 -5 -4.82855 | CCATAAGTGAAACTT GAATCG ACC TGATTC TTTTTCGATTTGCTG Daro_2548 2746756 - 2747262 + | hypothetical protein TERM 2523 2748446 - 2748435 - g 71 -5.8 -4.37092 | overlap 2748387 ACCCCTGGCAGAAAA CACC CTGT GGTG GTCGATGTCGCGACG Daro_2549 2747259 - 2748728 + | peptidase C14, caspase catalytic subunit p20 Daro_2550 2749161 - 2749589 + | hypothetical protein Daro_2551 2749790 - 2749560 - | hypothetical protein Daro_2552 2749840 - 2750436 + | hypothetical protein TERM 2524 2750645 - 2750669 + F 72 -5.5 -4.56597 | overlap 2750646 CTTTCCCCCCCCGCC CGCCGTCTTGC CCT GCATGCCGGCC TTTTTAAGCAAGGAA Daro_2553 2750692 - 2750934 + | hypothetical protein TERM 2525 2750988 - 2751027 + F 95 -11.2 -4.56597 | CCGACTACCCAGTAC CCCGTGGGGCTCACACCC TGTG GGGAACGGGCGCCACGGG TTTTTGAAAGGAACC TERM 2526 2751681 - 2751707 + G 72 -12.2 -3.06162 | CCTACCTCGCCTTCA TGTGCGGCGCGA CGA TCGAGCCGCGCG TCTTCCGCTGACGTC Daro_2554 2751047 - 2751718 + | hypothetical protein TERM 2527 2751984 - 2752020 + F 100 -13 -4.26189 | gap 1, opp_overlap 2751975, overlap 2752004 ACACCATCATCCCAC GCGGGGACCTCG-TCCC CGTC GGGATCGGCGTTCCCGC TTTTCCCATTTGTAG Daro_2555 2752047 - 2752628 + | DNA repair protein RadC TERM 2528 2752760 - 2752801 + F 72 -10.2 -3.4052 | gap 2 ATATTGCCCGCTTTG CGCAGGTGAT-G-GCGTCCC CCTG GGGACGCTCGGATACCTGCG TTGGTTCCGTTGCCG Daro_2556 2752900 - 2753208 + | hypothetical protein Daro_2557 2753205 - 2753537 + | hypothetical protein TERM 2529 2753564 - 2753596 + T 77 -6.2 -4.60924 | gap 1, overlap 2753567 TCGAGCAGCTCCATT GGGGGGCGTTGGGCC GACA GGCT-GACGCCCTGC TTTTTCCAACATTTA Daro_2558 2756210 - 2753754 - | putative ATPase involved in DNA repair Daro_2559 2756365 - 2758302 + | hypothetical protein TERM 2530 2759795 - 2759813 + G 81 -6 -4.73388 | TTTCTTTGGCAAGCG TGCCGA TGAGCGC TCGGCA TTTTTCGTCGGAATT Daro_2560 2758299 - 2759960 + | UvrD/REP helicase Daro_2561 2761322 - 2759985 - | DNA repair exonuclease-like protein TERM 2531 2761232 - 2761275 + g 89 -4.5 -5.26316 | gap 3 CCCCCAGGGCAATGG CCCGGTCGATGGCGG--CGCCG AAA CAGCGATCCGCC-TCCACCCGG TTTTTTGTGCCGTAG Daro_2562 2762641 - 2761319 - | hypothetical protein TERM 2532 2761997 - 2761985 - G 72 -2.6 -4.7497 | opp_overlap 2761996 GCCAGGTATGAAAAA CAGG AATCG CCCG GTCAGGTTGCACTGA Daro_2563 2762774 - 2763154 + | histone-like DNA-binding protein Daro_2564 2764320 - 2763112 - | hypothetical protein Daro_2565 2765290 - 2764337 - | hypothetical protein TERM 2533 2764648 - 2764637 - G 71 -7.2 -4.15029 | AGGCGACAGAAACAA GCGG CTGT CCGC ACGTAATCCTCGGTA TERM 2534 2765302 - 2765313 + r 72 -4.4 -4.60487 | opp_overlap 2765302 GCATCTCCCATCACA TGTC GACC GACA TTTTTCCGAATACTC Daro_2566 2765804 - 2765529 - | prophage CP4-57 regulatory Daro_2567 2766792 - 2766430 - | helix-hairpin-helix DNA-binding motif-containing protein Daro_2568 2767690 - 2766929 - | hypothetical protein TERM 2535 2767552 - 2767581 + g 80 -10 -4.11216 | gap 1, opp_overlap 2767548 GCGCGAAGAAACGCT TGCCCTCGGCGCT AGTGA AGCGC-GTGGGCA TTTTCAGGCTGGCGG TERM 2536 2768173 - 2768210 + H 77 -3.3 -5.14563 | gap 1, overlap 2768158 CGTTCGTCACCCCAC GGGGGCATC-TGCCCC CTGCCGT GGTGCGCGTTGCCTCC TTTTTTCCTGGAGCC Daro_2569 2768230 - 2768808 + | hypothetical protein Daro_2570 2768871 - 2769128 + | hypothetical protein Daro_2571 2769138 - 2769455 + | hypothetical protein TERM 2537 2769434 - 2769461 + F 84 -7.6 -4.62872 | gap 1, overlap 2769435 CCAACTGTTTACCCC G-CCCGTCCGCCG TCT CGGCTGACTGGTC TTTTTCCGCCTTGGT TERM 2538 2769435 - 2769459 + F 90 -11.3 -3.92577 | overlap 2769434 CAACTGTTTACCCCG CCCGTCCGCCG TCT CGGCTGACTGG TCTTTTTCCGCCTTG TERM 2539 2769474 - 2769505 + F 84 -13.8 -2.56596 | gap 1 GTCTTTTTCCGCCTT GGTGG-GCTAGTCCC GCC GGGACTGGTGCCACC TGCATTCATGGAGAA Daro_2572 2769525 - 2771138 + | hypothetical protein Daro_2573 2771125 - 2772135 + | hypothetical protein TERM 2540 2772179 - 2772140 - f 74 -10.7 -3.15544 | gap 2, opp_overlap 2772143 2772143 2772173 2772175, overlap 2772143 GGGCAGCTTGAGCAA GCAGG-GGGTGCGC-CGCC GCAA GGCGCGCGCACCCGCCTTT TCAATGGCGCTGCAG TERM 2541 2772143 - 2772176 + F 100 -16.8 -4.18494 | gap 2, opp_overlap 2772143 2772140, overlap 2772143 2772173 2772175 CAGCTTGAGCAAGCA GG-GGGTGCGC-CGCC GCAA GGCGCGCGCACCCGCC TTTTCAATGGCGCTG TERM 2542 2772175 - 2772143 - f 100 -17 -2.78216 | gap 1, opp_overlap 2772143 2772143 2772173, overlap 2772140 CAGCTTGAGCAAGCA GGGGGTGCGC-CGCC GCAA GGCGCGCGCACCCGC CTTTTCAATGGCGCT TERM 2543 2772143 - 2772175 + F 100 -17 -3.10775 | gap 1, opp_overlap 2772143 2772140, overlap 2772143 2772173 CAGCTTGAGCAAGCA GGGGGTGCGC-CGCC GCAA GGCGCGCGCACCCGC CTTTTCAATGGCGCT TERM 2544 2772173 - 2772221 + F 90 -13.3 -3.54741 | gap 1, opp_overlap 2772143 2772140, overlap 2772143 2772143 2772175 CAAGGCGCGCGCACC CG-CCTTTTCAATGGCGCTGCA GTGACA TGCGGCGCCAGTGAAAAGGTCA TTTGCCCGACTGGTA TERM 2545 2772175 - 2772218 + F 100 -20.5 -2.90813 | opp_overlap 2772140, overlap 2772143 2772173 AGGCGCGCGCACCCG CCTTTTCAATGGCGCTGCA GTGACA TGCGGCGCCAGTGAAAAGG TCATTTGCCCGACTG TERM 2546 2772349 - 2772390 + F 100 -14.6 -5.45802 | CCGTCATCGACCCTG GCGGGGATGCGCATC-CCCA CCCG TGGGCGATGC-CGTCTCCGC TTTTTCTTTTCCGAC TERM 2547 2772443 - 2772426 - g 72 -2.6 -4.72986 | overlap 2772428 GATTGCTATGAAAAA CGGACG TTCTCT CGTCAG CCTGGCCCAGGAACT Daro_2574 2772418 - 2773482 + | hypothetical protein TERM 2548 2773485 - 2773462 - T 72 -8.8 -3.78329 | gap 1, overlap 2773465 GCCCATGAATGGAAA GGA-CTGGCCG AAG CGGCCTGATCC AGAAGCCTGTTGAAA TERM 2549 2773832 - 2773795 - T 85 -8.5 -4.56978 | overlap 2773788 2773797 CCGGCAAACAAGAAA TGCTTGCGGTTATCGAA ATAC TTCGAGAATCGCAAGAA CTGGCTATTTGCGGG Daro_2577 2775415 - 2774444 - | radical SAM:molybdenum cofactor synthesis C-terminal TERM 2550 2774888 - 2774874 - G 73 -4.2 -4.6821 | AAGCGCAACACAAAA CTGCGT TCC ATGCAG TAGTCGATCATTGCG TERM 2551 2775460 - 2775437 - R 72 -6.6 -4.2717 | overlap 2775439 ATGACTTCACCAAAA TAGGCGCGAA CTTT TACGCGCCAA CGACCAAAAAAATGC TERM 2552 2775458 - 2775439 - R 76 -9.2 -3.73756 | overlap 2775437 GACTTCACCAAAATA GGCGCGAA CTTT TACGCGCC AACGACCAAAAAAAT Daro_2578 2776693 - 2775833 - | hypothetical protein Daro_2579 2777319 - 2776744 - | NapC/NirT cytochrome c, N-terminal Daro_2580 2778348 - 2777500 - | chlorite dismutase Daro_2581 2779151 - 2778438 - | hypothetical protein Daro_2582 2779885 - 2779175 - | cytochrome c-554 precursor TERM 2553 2779624 - 2779643 + g 81 -4.2 -4.9218 | opp_overlap 2779639, overlap 2779625 2779639 GTTCGCCGTAACCTG TTACGTGG CAAC CCACGCAG TTTTTGTCCTGCGTG TERM 2554 2779668 - 2779678 + g 70 -3.2 -4.65819 | TGCGTGTAGTCCTTT TTGG GAT CCAG TTTTGCTTTGGTTTT TERM 2555 2779923 - 2779939 + r 72 -10.8 -3.05816 | opp_overlap 2779923 GACTGGTAGGAAAAA GCGGCC CGTGC GGCCGC TTCACTGCAACATCA TERM 2556 2779939 - 2779923 - R 100 -10.8 -4.72986 | opp_overlap 2779923 GACTGGTAGGAAAAA GCGGCC CGTGC GGCCGC TTCACTGCAACATCA Daro_2583 2780953 - 2779952 - | respiratory nitrate reductase beta subunit TERM 2557 2780357 - 2780374 + g 75 -8.5 -4.21974 | opp_overlap 2780357 TATCCGCGGGAAGCA GCCAATA CATT TATTGGC TTTGTTAGCTACTGG Daro_2584 2783773 - 2780990 - | molybdopterin oxidoreductase:molydopterin dinucleotide-binding region TERM 2558 2781516 - 2781533 + g 74 -3.3 -4.82901 | AACTGTTGGCGTCCG GTCAGGG TTGG CCATGGC TTTTTATCAACAACA TERM 2559 2782033 - 2782045 + g 70 -3.4 -4.70879 | opp_overlap 2782033 GCTTTGGCCACAAAT TACG GAGAA CGTA TTTTTGACCTTTGGC TERM 2560 2782489 - 2782506 + g 77 -4.1 -4.88129 | overlap 2782492 GCTCGGTAATAGACT TGGCTGG CACA CCAGTTA TTTTTGCTGCTTTTT TERM 2561 2782492 - 2782503 + g 74 -5.8 -4.50218 | overlap 2782489 CGGTAATAGACTTGG CTGG CACA CCAG TTATTTTTGCTGCTT TERM 2562 2784013 - 2784040 + r 71 -10.8 -2.83784 | opp_overlap 2784027 2784037 2784038, overlap 2784012 2784020 2784032 2784038 AATAAATTCAGGGGG TTCATTTCGTTA AATT TAACGAAATGAG ATTTAACGTTTCGTT TERM 2563 2784063 - 2784037 - R 74 -8.8 -3.98173 | opp_overlap 2784013 2784012 2784020 2784032 2784038, overlap 2784027 2784038 2784040 TTAAATTTAACGAAA TGAGATTTAACG TTT CGTTAAATCCCT TGCCTGCCTGGGCAC TERM 2564 2784062 - 2784038 - R 78 -12.3 -2.98181 | opp_overlap 2784013 2784012 2784020 2784032 2784038, overlap 2784027 2784037 2784040 TAAATTTAACGAAAT GAGATTTAACG TTT CGTTAAATCCC TTGCCTGCCTGGGCA TERM 2565 2784060 - 2784040 - R 75 -11.3 -3.03282 | opp_overlap 2784012 2784020 2784032 2784038, overlap 2784027 2784038 2784037 AATTTAACGAAATGA GATTTAACG TTT CGTTAAATC CCTTGCCTGCCTGGG Daro_2585 2785872 - 2784466 - | helix-turn-helix, Fis-type Daro_2586 2786011 - 2787882 + | sensor histidine kinase Daro_2587 2789938 - 2787923 - | PAS TERM 2566 2788666 - 2788690 + g 76 -5.8 -4.60487 | opp_overlap 2788676 AGCCTTCGGCAATCG CTTCAAGC AACTGCAAA GCTTGAAG TTTTTCCACCTGATC TERM 2567 2789154 - 2789141 - G 85 -3.8 -5.34381 | AAATGGAAATAAAAA CCGA TTGGGG TCGG TACGTATCACCACCG TERM 2568 2789302 - 2789320 + g 71 -8.8 -3.80551 | GTGCTTCTTTCACTG CTGCCTGC ACA GCAGGAAG TTTGGTCAATATTTC TERM 2569 2789700 - 2789677 - G 70 -3.8 -4.66953 | opp_overlap 2789699, overlap 2789680 2789683 2789684 2789686 CCAAGACCGCAAAAA CAAGAACTAG CGAG CCTGTTCCTG GCTCACTGATGCCAT TERM 2570 2789708 - 2789683 - G 71 -6.1 -4.31587 | gap 1, opp_overlap 2789699, overlap 2789677 2789680 2789684 2789686 CCGCAAAAACAAGAA CTAGCGAGCCTG TTC CTGGCTCACT-G ATGCCATTCCATGAG TERM 2571 2790051 - 2790038 - R 70 -3.7 -4.69962 | CAGACCAAAAAATAA CCTGC ATCC GCCGG AGAAACAACCGAAAG Daro_2588 2790393 - 2790022 - | cupin region Daro_2589 2791113 - 2790472 - | hypothetical protein Daro_2590 2791682 - 2791110 - | RNA polymerase sigma factor TERM 2572 2791593 - 2791581 - G 74 -5.5 -4.57073 | CAGTTCTGTCAAAAA CACCT GAT AGGCG GCGTTATCGCCGGCA Daro_2591 2791832 - 2792428 + | putative transmembrane hydrogenase cytochrome B-type subunit oxidoreductase protein Daro_2592 2792441 - 2793229 + | oxidoreductase, molybdopterin binding Daro_2593 2793301 - 2793582 + | hypothetical protein Daro_2595 2794558 - 2794857 + | hypothetical protein Daro_2596 2794869 - 2795507 + | hypothetical protein Daro_2597 2795589 - 2797238 + | relaxase Daro_2598 2797240 - 2799147 + | hypothetical protein Daro_2599 2799144 - 2799767 + | hypothetical protein Daro_2600 2801194 - 2799848 - | two component, sigma54 specific, Fis family transcriptional regulator TERM 2573 2800071 - 2800061 - G 75 -2.4 -5.00884 | overlap 2800062 2800063 ACTGTCTCCAAAAAA GGCC TCA GCCC CCAATAGGGGCCCGG TERM 2574 2800547 - 2800558 + g 76 -5.8 -4.72272 | overlap 2800532 2800532 GGCTTTAACTGCCCC GGTG AAAG CACC TTTTTCGTAGCCGAA Daro_2601 2802632 - 2801178 - | sensor histidine kinase TERM 2575 2801893 - 2801923 + g 74 -3.1 -4.76041 | ACCATGCGCTGATAA GCGGCTGCCAGTT GGCCA ATCTCGTCGCCGC TTTTTGGTAGGTCTG TERM 2576 2802132 - 2802116 - G 70 -4.4 -4.49556 | overlap 2802117 GCGGCACGAAAGAAA CCTTGG AGTAG CCAAGA ATGACATGACCGAGT Daro_2602 2803507 - 2802629 - | phosphonate-binding periplasmic protein TERM 2577 2803111 - 2803074 - G 73 -10.7 -3.65046 | gap 1, opp_overlap 2803075 2803079, overlap 2803075 TCCGGATCGGAATAA GCGAAGACC-TTGCCG CGCAGGT CGGCAATGGTCTTCGT GCGTTGGTCGTCAGA TERM 2578 2803110 - 2803075 - G 73 -14.2 -2.78813 | gap 1, opp_overlap 2803075 2803079, overlap 2803074 CCGGATCGGAATAAG CGAAGACC-TTGCCG CGCAGGT CGGCAATGGTCTTCG TGCGTTGGTCGTCAG TERM 2579 2803075 - 2803110 + g 72 -14.2 -2.57795 | gap 1, opp_overlap 2803075 2803074, overlap 2803079 CCGGATCGGAATAAG CGAAGACC-TTGCCG CGCAGGT CGGCAATGGTCTTCG TGCGTTGGTCGTCAG TERM 2580 2803312 - 2803298 - G 73 -9.2 -3.85698 | GCCGCGCTGGACAAA GGCCAC AGA GCGGCC CAGTTTCTGTTCCAG TERM 2581 2803995 - 2803985 - g 78 -6.8 -4.66833 | CCCCAACGTCAAAAA GCAG TTC CTGC CCCGTTTGTGCAACC Daro_2603 2803797 - 2804492 + | 4Fe-4S ferredoxin, iron-sulfur binding Daro_2604 2804503 - 2805360 + | polysulphide reductase, NrfD TERM 2582 2805398 - 2805387 - g 78 -2.2 -5.06016 | AGGAGATAAAGAAAA TGGA AATG CCCA AAGTCACACGTCGTA TERM 2583 2806506 - 2806490 - g 90 -5.8 -5.25803 | gap 1, overlap 2806491 2806492 AACGTCGAGAAAAAA GGC-GGC TACT GCCTGCC GCGCGGCATGGGCTG Daro_2605 2805386 - 2808025 + | twin-arginine translocation pathway signal TERM 2584 2808286 - 2808254 - f 88 -12.6 -3.59979 | opp_overlap 2808242 2808282, overlap 2808255 GCGCTGCATCCCAAA GCCGGGCCGTGCGT GCCCT ACACGCGGCCCGGA TCCGCTCTGCAGTTC TERM 2585 2808285 - 2808255 - f 100 -16.1 -2.75844 | opp_overlap 2808242 2808282, overlap 2808254 CGCTGCATCCCAAAG CCGGGCCGTGCGT GCCCT ACACGCGGCCCGG ATCCGCTCTGCAGTT TERM 2586 2808317 - 2808346 + F 100 -19.3 -5.41143 | GGTTGTAACGAGGTT CGGCCCGCCGGCA TTCG TGCTGGTGGGCCG TTTTTTTCGGGAGTA TERM 2587 2808473 - 2808491 + G 79 -8.8 -4.25104 | overlap 2808475 GCGCGAGCGAGTATT TACCGGCT ACT GGCCGGTG TTTTCGTCGAGGAGC TERM 2588 2808475 - 2808489 + G 71 -9.2 -3.73042 | overlap 2808473 GCGAGCGAGTATTTA CCGGCT ACT GGCCGG TGTTTTCGTCGAGGA TERM 2589 2808750 - 2808774 + G 73 -10.7 -3.68853 | AGATTTATCAGGCGG CGGGCTTTGCC TTG GGCAAAGGTCG TTTCGAGGTTTTTGC Daro_2606 2808365 - 2809207 + | hypothetical protein Daro_2607 2809217 - 2809666 + | hypothetical protein Daro_2608 2809663 - 2810337 + | hypothetical protein TERM 2590 2810688 - 2810662 - g 100 -14.4 -4.18197 | overlap 2810663 AGGGCGGACTGAAAA CCTGGCTGGCTG CGA CCGCCAGCCAGA GCAGCGCGCCGGCCA TERM 2591 2810687 - 2810663 - g 83 -15.7 -3.10597 | overlap 2810662 GGGCGGACTGAAAAC CTGGCTGGCTG CGA CCGCCAGCCAG AGCAGCGCGCCGGCC Daro_2609 2810334 - 2810801 + | hypothetical protein TERM 2592 2811389 - 2811358 - g 93 -7.9 -4.9218 | gap 1, opp_overlap 2811359 2811359 2811377, overlap 2811360 CAGTCAGGACAAAAA GCCGGCA-GCCGAG TTTGC CCCGGCCCGCCGCC AGCTATTTCGCCGCC Daro_2610 2810798 - 2811931 + | 4Fe-4S ferredoxin, iron-sulfur binding Daro_2611 2811949 - 2812347 + | hypothetical protein Daro_2612 2812358 - 2813341 + | GTP cyclohydrolase subunit MoaA Daro_2613 2813418 - 2813609 + | hypothetical protein Daro_2614 2813636 - 2814592 + | putative efflux protein Daro_2615 2815106 - 2814678 - | hypothetical protein Daro_2616 2815502 - 2815119 - | hypothetical protein Daro_2617 2818647 - 2815528 - | heavy metal efflux pump CzcA Daro_2618 2819682 - 2818660 - | hypothetical protein Daro_2619 2820239 - 2819679 - | hypothetical protein Daro_2620 2821549 - 2820251 - | Outer membrane efflux protein Daro_2621 2822040 - 2821684 - | hypothetical protein Daro_2622 2822637 - 2822200 - | hypothetical protein Daro_2623 2823158 - 2822706 - | thioredoxin:cytochrome c biogenesis protein transmembrane region Daro_2624 2823465 - 2823130 - | signal peptidase II TERM 2593 2823308 - 2823294 - GR 70 -7 -4.03413 | overlap 2823280 2823295 AGGCGCTCAGACAAA GCGCCG TAT CGGCGA GATTGAAGGCTGACC TERM 2594 2823307 - 2823295 - GR 72 -10.5 -3.01726 | overlap 2823280 2823294 GGCGCTCAGACAAAG CGCCG TAT CGGCG AGATTGAAGGCTGAC Daro_2625 2823858 - 2823520 - | nitrogen regulatory protein P-II Daro_2626 2826953 - 2823855 - | heavy metal efflux pump CzcA TERM 2595 2824849 - 2824862 + g 70 -3.1 -4.59109 | gap 1, overlap 2824845 TCCAGCGCCACGTCG GTGGCC CCC GGC-AC TTTTTCGACAATCTC Daro_2627 2828162 - 2826963 - | secretion protein HlyD TERM 2596 2827603 - 2827622 + g 81 -7.8 -4.66833 | overlap 2827601 AGCTTGTCGGTGGCC GCCCGC AGGTTGGC GCGGGC TTTTTCCAGTTCAGA TERM 2597 2827673 - 2827686 + g 71 -8.1 -4.08216 | TTTCCGGCACGATCT GCTCC GCAT GGAGC TTTTCGGCGCGCTCG Daro_2628 2829457 - 2828159 - | Outer membrane efflux protein Daro_2629 2829875 - 2829525 - | hypothetical protein Daro_2630 2830663 - 2830163 - | peptidase A8, signal peptidase II TERM 2598 2830273 - 2830256 - G 72 -12.7 -3.1247 | ATCGGCGAGATTGAA GGCTGGC CAGT GCCAGCC GCCGGCATGGAAGTC TERM 2599 2830539 - 2830529 - G 85 -6.8 -4.76312 | opp_overlap 2830529 GACAAGATTGAAAAA CGGT AAC ACCG TTTCGCCTGCGCCCA Daro_2631 2832879 - 2830660 - | ATPase, E1-E2 type:heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase:heavy metal translocating P-type ATPase TERM 2600 2831235 - 2831205 - G 70 -3.8 -4.62069 | overlap 2831206 2831207 CCGCCACCGCAAAAA TCGCCAGCACCTGC TTT GCCGATGCCAGCAT GGTGACCGTCCGGCC Daro_2632 2832969 - 2833307 + | hypothetical protein TERM 2601 2833629 - 2833615 - g 73 -10 -3.69283 | CAACGGATGCAAGAA CTCCAG GAA CTGGAG AGGCAACTAAAAGAC Daro_2633 2833324 - 2833812 + | Cd(II)/Pb(II)-responsive transcriptional regulator Daro_2634 2834628 - 2834071 - | sigma-70 region 2 Daro_2635 2835040 - 2834630 - | hypothetical protein Daro_2636 2836130 - 2835078 - | arsenical-resistance protein ACR3 TERM 2602 2835256 - 2835276 + g 77 -3.9 -4.98857 | TTATTGCTGGCAGCG GTGAACGAC AGC GTGGTGCAC TTTTTGTAGTTCACT Daro_2637 2837915 - 2836143 - | anion-transporting ATPase TERM 2603 2836874 - 2836894 + g 71 -7.6 -4.07568 | gap 1 TGGCCAGTTCGACGG CGACGGCTG CAGC CAGC-GTCG TTTTGCCAACCCCGC TERM 2604 2837044 - 2837030 - G 78 -4.2 -4.7254 | overlap 2837032 ATGCCGCATCAAAAA CACTGG CGA CCAGCA ACTTCCGAAGCGCAT TERM 2605 2837950 - 2837960 + r 70 -6.8 -4.07885 | GCAGCACTTGGAACC GCTG CAA CAGC TTTTGGCCGGCGATA Daro_2638 2838297 - 2837932 - | arsenical resistance operon trans-acting repressor ArsD Daro_2639 2838758 - 2838369 - | low molecular weight phosphotyrosine protein phosphatase Daro_2640 2839373 - 2838867 - | low molecular weight phosphotyrosine protein phosphatase TERM 2606 2839026 - 2839009 - G 72 -12.7 -3.09518 | overlap 2839000 TCAAAAGCTTCAACA CGAGCCG ACAT CGGCTCG ACATGAGCGGGATCA Daro_2641 2839732 - 2839394 - | ArsR family transcriptional regulator Daro_2642 2839776 - 2840081 + | hypothetical protein TERM 2607 2840131 - 2840102 - f 100 -17.2 -3.79138 | AACAGATGTACCAAA CGGGCTTGGCCG AAAGAG CAGCCAAGCCCG TAGCGAAATTGAGTT Daro_2643 2840333 - 2840830 + | hypothetical protein Daro_2644 2841019 - 2841567 + | lytic transglycosylase, catalytic TERM 2608 2841555 - 2841575 + F 75 -5.4 -4.62069 | CCTGATGTCGGTAAG GGTGGC GCCATGAAG GCCACC TTTTTGAACTACCAC Daro_2645 2841564 - 2842241 + | OmpA/MotB Daro_2646 2842375 - 2842725 + | hypothetical protein Daro_2647 2842755 - 2843054 + | hypothetical protein Daro_2648 2843072 - 2843638 + | plasmid-like conjugative transfer protein TraE TERM 2609 2844266 - 2844299 + G 76 -9.4 -4.09685 | opp_overlap 2844265 CCGGGTCGAAGAGAC CCGCGGCACGCTCC CGTTAT GGAACGAGGCGCGG TTTTCGCGGGTGCGC Daro_2649 2843625 - 2844506 + | hypothetical protein Daro_2650 2844503 - 2845876 + | TraB pilus assembly Daro_2651 2845863 - 2846681 + | periplasmic thiol:disulfide interchange protein Daro_2652 2846678 - 2847259 + | hypothetical protein Daro_2653 2847267 - 2849834 + | hypothetical protein Daro_2654 2849831 - 2850199 + | hypothetical protein Daro_2655 2850196 - 2850786 + | hypothetical protein Daro_2656 2850797 - 2851195 + | hypothetical protein Daro_2657 2851192 - 2851824 + | hypothetical protein Daro_2658 2851821 - 2852849 + | hypothetical protein Daro_2659 2852836 - 2853594 + | hypothetical protein Daro_2660 2853604 - 2855724 + | conjugal transfer mating pair stabilization protein TraN Daro_2661 2855721 - 2856095 + | hypothetical protein TERM 2610 2856790 - 2856806 + G 72 -2.1 -4.82901 | CACCACCCTGAAGGT CAGCCAG GTG CCCGCTG TTTTTCTGGCCCAGC Daro_2662 2856104 - 2856970 + | hypothetical protein Daro_2663 2856967 - 2858415 + | hypothetical protein TERM 2611 2858521 - 2858568 + G 71 -6.8 -4.1552 | gap 1, overlap 2858536 GCGGCGGCGATCCAC GCCTCGGGCGACTAC-GCCGCTG CCC TGGCGGCTGTGGCCTTCTGCGGC TTTGTTGCGGCCCTG TERM 2612 2859435 - 2859463 + G 84 -9 -4.57569 | gap 2, opp_overlap 2859435, overlap 2859436 TTCCTGGCTCAACTA C-GGCAAGG-TTGC AGA GCAAGCCTTGCCTG TTTTTAGAAACGTGG TERM 2613 2859436 - 2859461 + G 86 -12.7 -3.90316 | gap 1, opp_overlap 2859435, overlap 2859435 TCCTGGCTCAACTAC GGCAAGG-TTGC AGA GCAAGCCTTGCC TGTTTTTAGAAACGT TERM 2614 2860807 - 2860821 + G 82 -9.2 -4.36914 | GCACGCCAATCTCTA CGCCCG AAC CGGGTG TTTTCTGACGGGACG Daro_2664 2858449 - 2861223 + | hypothetical protein Daro_2665 2861555 - 2861235 - | hypothetical protein TERM 2615 2861457 - 2861444 - G 74 -3.7 -4.82901 | overlap 2861445 TGGGCGCCATAAAAA GTGCG CCAA CGCCC ATCATCACAAGGCGG Daro_2666 2863179 - 2861689 - | filamentation induced by cAMP protein Fic TERM 2616 2861757 - 2861775 + g 85 -6 -5.01732 | overlap 2861769 AATCAAACGCTTCCT CTGGCA CCCTGCC TGCCAG TTTTTTCCGGCGGTT TERM 2617 2862280 - 2862247 - G 76 -12.3 -3.2794 | overlap 2862257 GTGCAGGTAGACGAA CCCGAACGAAGCCAC GGAG GCGGCTACGACCGGG TCGCTCTGACGTGGG TERM 2618 2862399 - 2862432 + g 74 -3.1 -4.73388 | gap 1 TGAGCCCCCCCCCTC GCAGCCAGTTTT-GTT CAT GGCGAAAACAGGCCGC TTTTTCATAGGGGTT TERM 2619 2862868 - 2862852 - G 79 -12.3 -3.55444 | CTGGCAGGTTGGAAA GTTCGCC GTT GGCGAAC CACTCCCAGAGATAA Daro_2667 2865448 - 2863412 - | hypothetical protein TERM 2620 2865006 - 2865017 + g 72 -3 -4.82901 | opp_overlap 2865006, overlap 2864999 GACTCGAGGAAGCGA TGAA ATCC TTCA TTTTTCTGAGCGCCA Daro_2668 2865906 - 2865445 - | hypothetical protein Daro_2669 2866825 - 2865899 - | hypothetical protein TERM 2621 2866177 - 2866161 - G 85 -2.9 -5.40474 | overlap 2866162 2866163 ATCCTGCGAAAAAAA CCCTCGG ACT CCAAGAA ACTCTCCAAGGTTCG TERM 2622 2867172 - 2867155 - R 100 -9.9 -5.54079 | opp_overlap 2867147 CTAAAAAGCAAAAAA GCCAATC CGAA GATTGGC CTAAGTGCTTGATTC Daro_2670 2867679 - 2867302 - | regulatory protein, MerR TERM 2623 2867336 - 2867357 + g 83 -2.2 -5.22039 | gap 1, opp_overlap 2867339, overlap 2867339 ATAATTGATTTCAAT TCACCGCGC AGGCC GCCCGG-GA TTTTTTCCATTTCCG ihfA 2867965 - 2867663 - | integration host factor subunit alpha Daro_2672 2870364 - 2867980 - | phenylalanyl-tRNA synthetase beta subunit TERM 2624 2869486 - 2869506 + g 78 -2.6 -5.08088 | gap 1 ATCAACCGCAATAGT CTGCTCGTT CAAC AGC-AGCAG TTTTTCTTCCGGCTT pheS 2871432 - 2870386 - | phenylalanyl-tRNA synthetase subunit alpha TERM 2625 2871255 - 2871269 + g 81 -5.6 -4.81212 | overlap 2871256 TCTTGGCGACGTTGA TCGCTG CAC CGGCGG TTTTCTTCTCCTCGG TERM 2626 2871499 - 2871470 - R 95 -12.3 -4.2408 | opp_overlap 2871477, overlap 2871477 CGACAAAACCACAAA CAAAAAAGGAGGC TCGC GCCTCCTTTTTTT CATCAAGCTTTCGCT TERM 2627 2871492 - 2871477 - R 100 -10.4 -5.73978 | opp_overlap 2871477, overlap 2871470 ACCACAAACAAAAAA GGAGGC TCGC GCCTCC TTTTTTTCATCAAGC TERM 2628 2871477 - 2871492 + r 100 -10.4 -5.52384 | opp_overlap 2871470 2871477 ACCACAAACAAAAAA GGAGGC TCGC GCCTCC TTTTTTTCATCAAGC rplT 2871873 - 2871514 - | 50S ribosomal protein L20 rpmI 2872082 - 2871885 - | 50S ribosomal protein L35 Daro_2676 2872581 - 2872168 - | translation initiation factor 3 TERM 2629 2872671 - 2872681 + r 72 -8.2 -3.81447 | TGATTTCTTCGTTGA GGCG ATG CGCC TTGTTCTGAGCTATG Daro_2677 2874638 - 2872722 - | threonyl-tRNA synthetase / Ser-tRNA(Thr) hydrolase TERM 2630 2874675 - 2874692 + H 93 -8.4 -5.14563 | opp_overlap 2874675 CTGGACGAAAAAAAA GTGCGG GGTGAG CCGCAC TTTTTTAATAAACGA TERM 2631 2874692 - 2874675 - H 100 -8.4 -5.86061 | opp_overlap 2874675 CTGGACGAAAAAAAA GTGCGG GGTGAG CCGCAC TTTTTTAATAAACGA Daro_2678 2875107 - 2875310 + | SlyX Daro_2679 2875312 - 2876319 + | phosphoesterase, DHHA1 Daro_2680 2876832 - 2876374 - | hypothetical protein TERM 2632 2877186 - 2877201 + r 100 -11.8 -5.06414 | opp_overlap 2877183 2877182 2877186 GTCGTCAGAAACGGA GCCGGG GAAA CCCGGC TTTTTGTTGCCGCAA TERM 2633 2877201 - 2877186 - R 73 -11.8 -2.70354 | opp_overlap 2877186, overlap 2877183 2877182 GTCGTCAGAAACGGA GCCGGG GAAA CCCGGC TTTTTGTTGCCGCAA TERM 2634 2877270 - 2877282 + r 72 -7.7 -3.87994 | overlap 2877257 ATCCGCTTCATGAGT GGTGT TTT ACACC TTTATGGAGATCGGT TERM 2635 2877415 - 2877403 - R 78 -10.5 -3.53091 | opp_overlap 2877384 ACGCCGGTCGCTAAA CCCGC TCG GCGGG CCTATATCGATCAAT TERM 2636 2877602 - 2877629 + r 71 -2.7 -4.74103 | gap 1 TCGCCTCGCTTAGCG TGAGGTCG-GGA TATAC TCCGCGATCGCA TTTTTGGCTTGCCGA TERM 2637 2877797 - 2877782 - R 100 -8.2 -5.83226 | opp_overlap 2877782 AACCCAATAAAAAAA CCCGCA GTTA CGCGGG TTTAATGGACTTGCT Daro_2681 2878808 - 2878113 - | hypothetical protein Daro_2682 2879444 - 2878878 - | hypothetical protein TERM 2638 2879105 - 2879125 + g 74 -3.9 -4.86621 | overlap 2879108 TCATCTTGCAGCCGT TCTCCGG AGAGGAA CCGGTGA TTTTTCCTTGCGCGT Daro_2683 2879678 - 2880061 + | hemerythrin HHE cation binding region Daro_2684 2880383 - 2881048 + | hypothetical protein TERM 2639 2881061 - 2881093 + T 81 -12.2 -3.25088 | gap 1, opp_overlap 2881070, overlap 2881070 TGATCGAGTCTGAGT TGAAGATAAGCCGGG GTTT CCCGGCTT-TTTTCA TTCATCAATTTCAGC TERM 2640 2881085 - 2881070 - T 85 -11.8 -3.67611 | opp_overlap 2881061 2881070 CTGAGTTGAAGATAA GCCGGG GTTT CCCGGC TTTTTTCATTCATCA TERM 2641 2881070 - 2881085 + T 100 -11.8 -5.30155 | opp_overlap 2881070, overlap 2881061 CTGAGTTGAAGATAA GCCGGG GTTT CCCGGC TTTTTTCATTCATCA Daro_2685 2881756 - 2881091 - | hypothetical protein Daro_2686 2881925 - 2882551 + | hypothetical protein TERM 2642 2882566 - 2882595 + T 70 -4.2 -4.62069 | gap 1, opp_overlap 2882569, overlap 2882572 AGCAATCAACGCTCA ACATGGCCCCGCC CGAGT GGCGGGGTT-TGC TTTTTCCCCTAGCGA TERM 2643 2882572 - 2882590 + T 100 -13.1 -4.32649 | opp_overlap 2882569, overlap 2882566 CAACGCTCAACATGG CCCCGCC CGAGT GGCGGGG TTTGCTTTTTCCCCT Daro_2687 2882912 - 2882604 - | hypothetical protein Daro_2688 2883432 - 2883043 - | hypothetical protein Daro_2689 2884479 - 2883979 - | hypothetical protein Daro_2690 2885129 - 2884509 - | hypothetical protein Daro_2691 2887222 - 2885129 - | hypothetical protein TERM 2644 2886863 - 2886875 + g 84 -9.1 -4.4773 | AATCCGCTCGACATG CCCGA GAA TCGGG TTTTCCTTCATGTGC Daro_2692 2889300 - 2887222 - | hypothetical protein TERM 2645 2887559 - 2887571 + g 70 -3.3 -4.63218 | overlap 2887551 2887560 TCGATCTGTTGCTGC TCCGG TGA CTGGG TTTTGTTGGCAAGCA Daro_2693 2889658 - 2889290 - | hypothetical protein Daro_2694 2890667 - 2889738 - | hypothetical protein TERM 2646 2890181 - 2890207 + g 73 -10.8 -3.58522 | opp_overlap 2890172 2890165 CCACAACGCGAGCGA CCATCGCCGGAA ATT TTCCAGCGAAGG TTTCACCGTCGTAGT Daro_2695 2892171 - 2890657 - | helicase, C-terminal:Type III restriction enzyme, res subunit:DEAD/DEAH box helicase, N-terminal Daro_2696 2892799 - 2892161 - | hypothetical protein Daro_2697 2893085 - 2892792 - | hypothetical protein TERM 2647 2893446 - 2893481 + G 91 -4.7 -5.5112 | gap 1, opp_overlap 2893447 2893450, overlap 2893451 ACCAAATACAAGCAA TGCAGCCGTCCGCGTC GAAAA GACCCGGGCGGTT-TA TTTTTTGTTGGTAAG TERM 2648 2893451 - 2893477 + G 100 -11.5 -5.20735 | opp_overlap 2893447 2893450, overlap 2893446 ATACAAGCAATGCAG CCGTCCGCGTC GAAAA GACCCGGGCGG TTTATTTTTTGTTGG Daro_2698 2893253 - 2893495 + | hypothetical protein Daro_2699 2893888 - 2893670 - | hypothetical protein TERM 2649 2893809 - 2893829 + g 85 -7.5 -4.82901 | overlap 2893808 2893807 CTTATCGGGATGATC GGCGGGATC GGC GGTTCTGCC TTTTTATCGCCAAGA TERM 2650 2893978 - 2893996 + r 73 -3.9 -4.81306 | gap 1 GCGACAAAACATGAT TCATCGCG TTGG CGC-ATGA TTATTTTTTCTTCGG Daro_2700 2894611 - 2893997 - | hypothetical protein TERM 2651 2894655 - 2894672 + r 70 -7 -4.08767 | CAGAAACCGCGCCAG GCTGGT AAGGGA ACCAGC TTTTCGGGAGCTACC Daro_2701 2895091 - 2894708 - | hypothetical protein Daro_2702 2895465 - 2895094 - | hypothetical protein TERM 2652 2895703 - 2895683 - H 76 -7.5 -4.17698 | ATCGATATAGACAAA GCAATCCTG GCA CTGGATCGC GCCCACGGAATAGTC Daro_2703 2896095 - 2896469 + | hypothetical protein TERM 2653 2896496 - 2896513 + T 100 -10.5 -5.63517 | opp_overlap 2896486 ATTTAGGACAGGCTG GCCGGGG TAAC TCCCGGC TTTTTTATTTCAGGC Daro_2704 2897737 - 2896523 - | Phage integrase TERM 2654 2897089 - 2897104 + g 75 -7.6 -4.20084 | CATCAAACGCCCTTA GAAGTC CTCC GACTTC TTTTGGGTCGGTAAT TERM 2655 2897863 - 2897848 - H 100 -7.5 -5.52096 | opp_overlap 2897847 AAACCCAATAAAAAA CCCGC ACTTAG GCGGG CTTAATGGACTGCAC Daro_2705 2898040 - 2898849 + | squalene/phytoene synthase Daro_2706 2898854 - 2899687 + | squalene/phytoene synthase Daro_2707 2899692 - 2900924 + | amine oxidase TERM 2656 2901389 - 2901401 + G 76 -5.5 -4.7078 | CTCAAGATCGGTGCT GTGGT CTC GCCAC TTTTTCGGTCCTTCG Daro_2708 2901026 - 2902756 + | acetyl-CoA synthetase Daro_2709 2902768 - 2903034 + | phosphopantetheine-binding Daro_2710 2903038 - 2903565 + | GCN5-related N-acetyltransferase Daro_2711 2903959 - 2905923 + | GETHR pentapeptide Daro_2712 2906111 - 2907328 + | extracellular ligand-binding receptor Daro_2713 2907987 - 2907313 - | ABC transporter related Daro_2714 2907986 - 2908588 + | lipolytic protein TERM 2657 2909181 - 2909170 - g 73 -4.4 -4.58283 | opp_overlap 2909158 CAACCTTCGCAAAAA GGTT TTGA AACC GCTTTGCTTCAGGCC Daro_2715 2908594 - 2909655 + | tRNA 2-selenouridine synthase Daro_2716 2910146 - 2909628 - | hypothetical protein Daro_2717 2910166 - 2910573 + | OsmC-like protein Daro_2718 2910660 - 2913377 + | GCN5-related N-acetyltransferase:CoA-binding TERM 2658 2913449 - 2913421 - T 100 -14.7 -3.64703 | opp_overlap 2913427, overlap 2913427 CGGCGCGCAGGCAAA CAAAAAGCCGGTC AAT GACCGGCTTTTTT ACGACTTCCATTCGC TERM 2659 2913427 - 2913443 + T 100 -13.7 -5.055 | opp_overlap 2913421 2913427 GCAGGCAAACAAAAA GCCGGTC AAT GACCGGC TTTTTTACGACTTCC TERM 2660 2913443 - 2913427 - T 100 -13.7 -5.30616 | opp_overlap 2913427, overlap 2913421 GCAGGCAAACAAAAA GCCGGTC AAT GACCGGC TTTTTTACGACTTCC Daro_2719 2913785 - 2913471 - | hypothetical protein TERM 2661 2913824 - 2913787 - R 75 -11.9 -2.96009 | overlap 2913779 2913778 GAAAAACCGTACATA GGCCCGCCTCCCTGCCT GAAA AAGCAGGGCGTCAAGCC TGTGCGAACTGCTCG Daro_2720 2915224 - 2913818 - | GTP-binding protein, HSR1-related TERM 2662 2914730 - 2914760 + g 76 -10.2 -3.7941 | opp_overlap 2914717 AAGGCGCGCGATCTC CACCTGAGCCCGGG CAG CCCGGGAACGGGCG TTGTTGTGAAAAATC TERM 2663 2915243 - 2915229 - R 74 -10 -3.48276 | GGCGCCGCCATAGAA TGCGGT CCA ACCGCA GGCTAAAAGCCTCGC Daro_2721 2916552 - 2915269 - | Glu/Leu/Phe/Val dehydrogenase, C terminal:Glu/Leu/Phe/Val dehydrogenase, dimerization region TERM 2664 2915977 - 2915940 - G 75 -2.5 -4.87665 | gap 1, overlap 2915975 GGGCAGTGACAAAAA CGCCCCGCCCG-GTTGCA TCC TGCCGCCCGAGCGAACCG CCCAGCGACAGCGGC TERM 2665 2917316 - 2917260 - g 79 -8.6 -4.56775 | AGCGCCCCGCAAAAA GGCTGGAGCGC-TTCGCCGTGCTGCG CCATGAT CGC-GCTCGGCGAACGTGCCCGCGCC CACATCGACAGCACG Daro_2722 2916669 - 2917799 + | aminotransferase, class V Daro_2723 2918597 - 2917785 - | hypothetical protein Daro_2724 2918780 - 2919226 + | hypothetical protein Daro_2725 2919308 - 2919739 + | hypothetical protein Daro_2726 2919850 - 2920149 + | hypothetical protein TERM 2666 2920194 - 2920173 - T 100 -15.9 -4.81249 | opp_overlap 2920173 CGCCAAATGTAAAAA GGGCGATGC CGCG GCATCGCCC TTTTTGTTTGCAGCC TERM 2667 2920173 - 2920194 + T 100 -15.9 -5.27335 | opp_overlap 2920173 CGCCAAATGTAAAAA GGGCGATGC CGCG GCATCGCCC TTTTTGTTTGCAGCC Daro_2727 2922810 - 2920219 - | AAA ATPase, central region:Clp, N terminal TERM 2668 2921500 - 2921512 + g 80 -3.3 -5.09762 | opp_overlap 2921492 GCCAAATCGCTTCTT GGAAG CCT CGTCC TTTTCTTTCTTGACC TERM 2669 2923969 - 2923953 - g 71 -5.7 -4.42238 | opp_overlap 2923957 2923962 CCAGGTCAAGGAAAA CGCGGCC GAA GCCCACG GCATTTCCCAGGCCG Daro_2728 2922991 - 2924625 + | chemotaxis sensory transducer TERM 2670 2924682 - 2924638 - T 82 -9.4 -4.16016 | gap 1, opp_overlap 2924651, overlap 2924651 TGAGTCCGGAACAAA GCCGATACAACAA-GGGGAGC CTCG GCTCCCCTTTATTATTTCTGC CAGCGCGCTGCCGCG TERM 2671 2924668 - 2924651 - T 93 -12.7 -3.89348 | opp_overlap 2924651, overlap 2924638 AAGCCGATACAACAA GGGGAGC CTCG GCTCCCC TTTATTATTTCTGCC TERM 2672 2924651 - 2924668 + T 100 -12.7 -4.63048 | opp_overlap 2924638 2924651 AAGCCGATACAACAA GGGGAGC CTCG GCTCCCC TTTATTATTTCTGCC Daro_2729 2925125 - 2924673 - | molybdopterin synthase subunit MoaE prfC 2926714 - 2925140 - | peptide chain release factor 3 Daro_2731 2927509 - 2926778 - | hypothetical protein TERM 2673 2927427 - 2927407 - G 74 -4 -4.74103 | overlap 2927422 CCCCCAAGGCAAAAA TCAGCG AATAAATAA CGCTGA TGCTGCGCGTCGCAC Daro_2732 2927944 - 2927576 - | hypothetical protein Daro_2733 2928897 - 2928052 - | aldose 1-epimerase TERM 2674 2928680 - 2928653 - G 83 -4.8 -5.02074 | gap 1, overlap 2928657 CGAGTCCGCAAAAAA CCATGCTTGGGCA GGT CGCCCAGAC-TGG AAAATTGCGGGAAAC Daro_2734 2929222 - 2928881 - | hypothetical protein Daro_2735 2929310 - 2930836 + | hypothetical protein TERM 2675 2931623 - 2931607 - g 78 -4.3 -4.83615 | GACGCTGGAGAAAAA GCTGCAT GAA ACGCTGC CCAAGCTGACCGAAC Daro_2736 2930846 - 2931691 + | hypothetical protein Daro_2737 2932039 - 2931683 - | hypothetical protein Daro_2738 2932118 - 2933359 + | Sodium:dicarboxylate symporter Daro_2739 2933797 - 2933363 - | hypothetical protein Daro_2740 2933923 - 2934444 + | hexapaptide repeat-containing transferase Daro_2741 2934456 - 2935115 + | hypothetical protein TERM 2676 2935265 - 2935282 + G 74 -12.7 -3.19656 | opp_overlap 2935256 CAGACACCACCGCGG CGGCAGG CTAC CCTGCCG TTGATCCGTGCCTTT Daro_2742 2935139 - 2935792 + | DNA-7-methylguanine glycosylase TERM 2677 2935839 - 2935797 - T 100 -23 -3.08639 | opp_overlap 2935807 2935837, overlap 2935800 2935807 AACACCTGTAATACA CAACAAAAAAGCCATCGTCG AAG CGACGATGGCTTTTCCGCTG CCCACAGCAGTGAGT TERM 2678 2935836 - 2935800 - T 100 -21.1 -3.68292 | opp_overlap 2935807, overlap 2935797 2935807 ACCTGTAATACACAA CAAAAAAGCCATCGTCG AAG CGACGATGGCTTTTCCG CTGCCCACAGCAGTG TERM 2679 2935829 - 2935807 - T 100 -17.8 -5.62045 | opp_overlap 2935807, overlap 2935800 2935797 ATACACAACAAAAAA GCCATCGTCG AAG CGACGATGGC TTTTCCGCTGCCCAC TERM 2680 2935807 - 2935829 + T 100 -17.8 -4.13767 | opp_overlap 2935800 2935797 2935807 ATACACAACAAAAAA GCCATCGTCG AAG CGACGATGGC TTTTCCGCTGCCCAC Daro_2743 2936346 - 2935861 - | flagellar assembly protein FliW TERM 2681 2936948 - 2936931 - g 76 -5.5 -4.66163 | overlap 2936942 ATCCTGATGGAAAAA TTCGCCG AAGA CGCCGAA CTGCTCGGCCAATTG TERM 2682 2938333 - 2938311 - g 78 -6.8 -4.68506 | overlap 2938312 AAGGAACTGGAAAAA CCCGGCCGCG ACC CGCGCCCCGA GTTCAAGACGGCCAC Daro_2744 2936427 - 2938745 + | RNA binding S1 TERM 2683 2938785 - 2938759 - f 91 -12.2 -3.76839 | opp_overlap 2938756 2938761, overlap 2938761 GAACCTGAACGCAAA GACCCGTCCGCC GGC GGCGGAGGGGTT GCATTTGCTTACATC TERM 2684 2938783 - 2938761 - f 100 -14.8 -3.46336 | opp_overlap 2938761 2938756, overlap 2938759 ACCTGAACGCAAAGA CCCGTCCGCC GGC GGCGGAGGGG TTGCATTTGCTTACA TERM 2685 2938761 - 2938783 + F 100 -14.8 -3.33399 | opp_overlap 2938759 2938761, overlap 2938756 ACCTGAACGCAAAGA CCCGTCCGCC GGC GGCGGAGGGG TTGCATTTGCTTACA TERM 2686 2938902 - 2938929 + G 100 -6.2 -5.79595 | gap 1 CCCACTGCTACTGCT TGCCCTG-CTCCC CTT GGGACTCTGGGCA TTTTTTGTTTTCCCC TERM 2687 2939230 - 2939203 - g 80 -14.8 -3.05384 | CTGGGCTGGATCGAA CGCGCCAACCGC CCAC GCGGTCCGCGCG GCGAACCGGACCTGT TERM 2688 2939444 - 2939470 + G 73 -13.6 -2.71483 | opp_overlap 2939434, overlap 2939440 2939463 2939466 AACCACTGGCTTGGC TGACCGCCGCCG TTG CTGCGGCGGGCA TCATTGCCGCCCTGT Daro_2745 2938879 - 2940195 + | oxidoreductase FAD-binding region TERM 2689 2940215 - 2940199 - T 86 -7.3 -5.00642 | GAATTCAGATAAAAA CCAAAGC AAT ACTTTGG AAAATACCGAGCCGC TERM 2690 2940292 - 2940311 + T 100 -12.2 -4.57569 | opp_overlap 2940292 ATATGCAATGAAAAA GCACAGCT TTGA AGCTGTGC TTTTTAACGCGCTGC TERM 2691 2940311 - 2940292 - T 100 -12.2 -4.89009 | opp_overlap 2940292 ATATGCAATGAAAAA GCACAGCT TTGA AGCTGTGC TTTTTAACGCGCTGC Daro_2746 2941380 - 2940370 - | hypothetical protein TERM 2692 2941638 - 2941622 - H 70 -10.1 -3.13177 | ACATGCCATACTTAA CCAGCCG CGC CAGCTGG AGCGCAGATTCAGGC TERM 2693 2941983 - 2941936 - g 82 -9.7 -4.35885 | gap 1 ATCGACTACAAGAAA GCCGGCGTGGCCGAAGCCAATC TGCCG GACTGGAG-CGCCCGCGCCGGC TGGGAAAAGCTGCTC TERM 2694 2942127 - 2942103 - g 78 -13.5 -3.14132 | opp_overlap 2942120 CCCGTCCCTGATCAA GCGGCCGGTGC TCG ACACCGGCAGC AAGCTGCTGGTTGGC Daro_2747 2941798 - 2942178 + | hypothetical protein Daro_2748 2942175 - 2943056 + | Hsp33 protein TERM 2695 2944018 - 2944007 - g 70 -3.6 -4.62471 | opp_overlap 2944009 2944011, overlap 2944009 CTCAAGCTGGAAAAA CAGG CCGA CCCG GATCTGCCATTGGTC Daro_2749 2943053 - 2944420 + | sensor histidine kinase Daro_2750 2945845 - 2944439 - | FAD linked oxidase, C-terminal:FAD linked oxidase, N-terminal TERM 2696 2945573 - 2945613 + gT 72 -11 -3.02511 | opp_overlap 2945608 ACTGATGACCACCGC CCAGCCCGCTTGGTCCGG GGTCG CCGCACCACACAGGCTGG TGTTGCCGCCCTGCG Daro_2751 2947142 - 2945820 - | hypothetical protein TERM 2697 2947108 - 2947124 + g 78 -2.1 -5.11063 | opp_overlap 2947110, overlap 2947109 2947110 CAACCGAGAGAAACG AAGCCGA CGG TCGGCAC TTTTTGTTGAATAGT Daro_2752 2948570 - 2947200 - | metal-dependent phosphohydrolase Daro_2753 2949991 - 2948663 - | Sodium/hydrogen exchanger TERM 2698 2950188 - 2950204 + r 77 -12.3 -2.72144 | overlap 2950187 ACGATATTCCGCTCC GGCTCAG TGC CTGAGCC ATTTCAGCAACATCG Daro_2754 2954018 - 2950191 - | PAS/PAC sensor hybrid histidine kinase TERM 2699 2953069 - 2953055 - G 74 -7 -4.32034 | GCAGCACGATGAAAA GCGCGG ACC CCGTGC CAACAAAAAAGAGCA TERM 2700 2953858 - 2953876 + g 70 -10.2 -3.53811 | TCGACCTGCTGGGTT GCGAGCGC GGT GCGCTCCC TTTCGCGCCAATCCA TERM 2701 2954370 - 2954385 + H 100 -11.8 -5.14563 | opp_overlap 2954370, overlap 2954380 CGGTAGTCCAAAAAA CCCCGC CAGT GCGGGG TTTTTTAATGCCCGC TERM 2702 2954385 - 2954370 - H 100 -11.8 -5.0538 | opp_overlap 2954370 2954380 CGGTAGTCCAAAAAA CCCCGC CAGT GCGGGG TTTTTTAATGCCCGC TERM 2703 2954380 - 2954400 + H 70 -5.3 -4.34789 | opp_overlap 2954370, overlap 2954370 AAAAACCCCGCCAGT GCGGGGTTT TTT AATGCCCGC TTGTTTTATACGTTC Daro_2755 2954681 - 2955511 + | MscS mechanosensitive ion channel:conserved TM helix Daro_2756 2956882 - 2956007 - | hypothetical protein Daro_2757 2956887 - 2957279 + | GtrA-like protein Daro_2758 2958834 - 2957230 - | glycosyl transferase family protein TERM 2704 2958718 - 2958734 + g 77 -11.5 -3.61398 | opp_overlap 2958718 GTCGGGAATCATCAA CGGCCGG AGC CCGGCTG TTATTCCGAGCCACA Daro_2759 2959927 - 2958839 - | glycosyl transferase family protein TERM 2705 2960537 - 2960554 + r 100 -10.5 -5.06414 | opp_overlap 2960536 CAACTCAACAATCAG GCCGGGG TAAC TCCCGGC TTTTTATTGGCGGAA TERM 2706 2960921 - 2960938 + r 72 -5.5 -4.52589 | gap 1, opp_overlap 2960905 2960903 2960902 2960919 CGGCCACCATGAATG GCCGTGGC CAA GCT-CGGC TTTTGTATACCGCCA Daro_2760 2962303 - 2961056 - | benzoate membrane transport protein:xanthine/uracil/vitamin C permease TERM 2707 2961901 - 2961862 - G 81 -4.3 -4.87786 | gap 2, opp_overlap 2961899, overlap 2961863 CGAATCGGAGAAAAA CCCCGGCCACCATGCCCAT CACG ATGGGCATGG-G-CAAGGC TGACATCAGTCGTTT Daro_2761 2963286 - 2962315 - | aldo/keto reductase TERM 2708 2962776 - 2962754 - G 70 -4.8 -4.55287 | overlap 2962763 2962764 2962767 TGCATCGAGACAAAA CAACTCAAAC CCA GCTCGCGTTG TCGCGCCAGCATGGC TERM 2709 2963518 - 2963497 - R 100 -12.3 -5.47399 | overlap 2963498 TCAATTCGAAAAAAA CTGGCTCGC CGAA GCGAGCCAA AAAACCCGAAACCCT TERM 2710 2963517 - 2963498 - R 100 -13.6 -3.87355 | overlap 2963497 CAATTCGAAAAAAAC TGGCTCGC CGAA GCGAGCCA AAAAACCCGAAACCC TERM 2711 2963539 - 2963523 - R 83 -5.1 -5.10497 | overlap 2963524 2963530 2963531 AAGCGAGCCAAAAAA CCCGAAA CCC TTTCCGG ACAAACCGTAGGAAA Daro_2762 2964056 - 2963616 - | hemerythrin HHE cation binding region Daro_2763 2964334 - 2964074 - | hypothetical protein Daro_2764 2965334 - 2964402 - | chemotaxis sensory transducer Daro_2765 2966682 - 2965456 - | extracellular ligand-binding receptor TERM 2712 2965564 - 2965591 + g 74 -5.6 -4.50976 | overlap 2965548 GCCGAGATCAAATTT GCTCATGGCA TTTAGCGC TGCAATGAGC TTTTCTCGTGTCACA TERM 2713 2965915 - 2965891 - G 78 -13.5 -3.14683 | ATAGGCCTGCACGAA CTCGCCAGCCA GCT TGGCCGGCGTG ATGACGATGACAACG TERM 2714 2966713 - 2966701 - R 100 -3.3 -5.76949 | opp_overlap 2966707 GATTGGCAAAAAAAA CAGGC TTC GCATG GCGCTCTATTTCCGG Daro_2766 2967588 - 2966719 - | hypothetical protein Daro_2767 2968182 - 2967613 - | hemerythrin HHE cation binding region TERM 2715 2968225 - 2968202 - R 86 -7.3 -5.00616 | opp_overlap 2968202 2968203, overlap 2968203 TTTCCTTGCAAAAAA CCCCGGGCG ATCAAA CGCCCAGGT GTTTCTGGATCAATT TERM 2716 2968224 - 2968203 - R 81 -10.8 -3.60048 | opp_overlap 2968203 2968202, overlap 2968202 TTCCTTGCAAAAAAC CCCGGGCG ATCAAA CGCCCAGG TGTTTCTGGATCAAT Daro_2768 2968925 - 2968212 - | ABC transporter related Daro_2769 2969691 - 2968918 - | ABC transporter related Daro_2770 2970646 - 2969684 - | inner-membrane translocator TERM 2717 2970405 - 2970370 - G 73 -13.2 -2.75535 | opp_overlap 2970387, overlap 2970361 2970359 CGAACAGGGCAACCA GGGCCGAGATGCCGAC CGCG GCCGGCATCACGAACC ACAGGCTGGCCGCTT Daro_2771 2971517 - 2970651 - | inner-membrane translocator TERM 2718 2971302 - 2971284 - G 74 -12.4 -3.16564 | overlap 2971298 CGCCCACTCGAGGAA GGCCCCGA AGA TCAGGGCC AGCGGCACGCCGAGC Daro_2772 2972853 - 2971681 - | extracellular ligand-binding receptor Daro_2773 2973758 - 2972970 - | hydratase/decarboxylase Daro_2774 2974558 - 2973776 - | hydratase/decarboxylase Daro_2775 2976054 - 2974594 - | aldehyde dehydrogenase TERM 2719 2975481 - 2975507 + g 91 -13.6 -3.72695 | CCTTGTTCATGACCT CGCCGAGCAGCG CAG CGGTGCGCGGCG TTTCCTCGGACGGCT Daro_2776 2977042 - 2976113 - | glyoxalase/bleomycin resistance protein/dioxygenase Daro_2777 2980646 - 2977086 - | 2-oxoacid ferredoxin oxidoreductase TERM 2720 2980199 - 2980242 + g 77 -15.2 -2.74488 | overlap 2980191 2980201 TGCAGCTCGGGTCGT CGCCGGCGATGGCCAGGACG CCAC CGTTCTTGCCGATGCCGGTG TAGTTGGCGTGCTTC TERM 2721 2980201 - 2980240 + g 75 -14.2 -2.91452 | overlap 2980191 2980199 CAGCTCGGGTCGTCG CCGGCGATGGCCAGGACG CCAC CGTTCTTGCCGATGCCGG TGTAGTTGGCGTGCT Daro_2778 2980899 - 2982239 + | ring hydroxylating dioxygenase, alpha subunit:Rieske (2Fe-2S) region Daro_2779 2982254 - 2982742 + | aromatic-ring-hydroxylating dioxygenase, beta subunit TERM 2722 2982792 - 2982748 - f 77 -6.1 -4.70169 | overlap 2982753 2982789 CCACATCTAACAAAA GGGAAGTCCGGGCGGGCTGCC ACA GACAGCCTGCCCGGAAAGCGG CATCGACCGCCCCAA TERM 2723 2982787 - 2982753 - f 100 -17.8 -3.45634 | overlap 2982748 TCTAACAAAAGGGAA GTCCGGGCGGGCTGCC ACA GACAGCCTGCCCGGAA AGCGGCATCGACCGC Daro_2780 2982820 - 2983830 + | benzoate 1,2-dioxygenase ferredoxin reductase subunit benD 2983851 - 2984627 + | 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase TERM 2724 2984666 - 2984693 + F 100 -15.6 -5.47218 | TGACGGCCCTTGATA TGCCGCCGCATC ATCC GATGCTGCGGCA TTTTTTTGGCTAGAA TERM 2725 2984888 - 2984865 - f 93 -10.2 -4.49337 | gap 1 GCACAATTGAGAAAA CCG-CCGAGGC CAT GCCGCGGACGG GGGGCATCACCATGA Daro_2782 2984900 - 2985865 + | AraC family transcriptional regulator Daro_2783 2986766 - 2987452 + | molybdate ABC transporter permease Daro_2784 2987449 - 2988528 + | molybdate ABC transporter ATP-binding protein TERM 2726 2990294 - 2990274 - g 76 -5.4 -4.62471 | overlap 2990275 2990276 CTGAATGCGGAAAAA GCCGAG GGTCTCGAA CTCGGC TATCGCAAGCAATTT Daro_2785 2988864 - 2990996 + | TonB-dependent receptor Daro_2786 2991004 - 2991546 + | putative transmembrane protein TERM 2727 2992426 - 2992390 - g 80 -11.7 -3.77464 | gap 1, opp_overlap 2992390 ACATGAGCCATGAAA TCCGC-ACCCCGATGA ACGGCA TCATCGGGGTCGCCGA TCTGCTCGCGGCCGG TERM 2728 2992601 - 2992569 - g 70 -3.3 -4.59773 | CTCCAGCTGGAAAAA CTGCCCTTCAGCATC CGC GAAACCATAGAGCAG GTCATCTCGGTCTTT TERM 2729 2994167 - 2994150 - g 76 -6.3 -4.68506 | gap 1, overlap 2994152 AAGGAAGCGGAAAAA CT-GCTGC GGG GCAGCCAG ATCGAAACAGGCAAG Daro_2787 2991543 - 2994272 + | Hpt sensor hybrid histidine kinase TERM 2730 2995071 - 2995050 - g 95 -3 -5.64873 | gap 1, overlap 2995052 CCCAAGAAGAAAAAA TC-CGCCAG CTGGC CTGGCACGA TCCTGTCACCGGCCT TERM 2731 2995712 - 2995692 - g 70 -3.9 -4.66163 | opp_overlap 2995692, overlap 2995693 ATTTCCAGCCAAAAA TTTCCGCGG CCA CCGGCGAAA TCATTGGCGCCGAAG Daro_2788 2994269 - 2996416 + | response regulator receiver modulated diguanylate cyclase/phosphodiesterase Daro_2789 2996413 - 2998440 + | TonB-dependent receptor Daro_2790 2999131 - 2998457 - | hypothetical protein Daro_2791 2999382 - 2999128 - | transglycosylase-associated protein TERM 2732 2999219 - 2999204 - G 80 -11.8 -3.74872 | ATTGAGGCGATGAAA CCGGCG CCCT CGCCGG CCTGATACCAGCCCA TERM 2733 2999440 - 2999462 + r 73 -12 -2.73994 | opp_overlap 2999414 2999429, overlap 2999437 GAAATCCGCTGGCCG GCAGACAACC CTC GGTTGCCTGC TGATATTAACGCCAT Daro_2792 3000432 - 2999545 - | regulatory protein, LysR:LysR, substrate-binding TERM 2734 3000395 - 3000380 - G 78 -6.8 -4.58395 | overlap 3000381 GCCACCGCCGAAAAA CTGCCG AGTT CGGCAA CCCGAACAAAGAGGT Daro_2793 3000528 - 3001322 + | extradiol ring-cleavage dioxygenase III subunit B Daro_2794 3001335 - 3001859 + | cytochrome B561 Daro_2795 3001881 - 3002435 + | YceI Daro_2796 3002463 - 3003032 + | YceI TERM 2735 3003049 - 3003082 + F 100 -18.1 -3.66095 | opp_overlap 3003037 3003068 CCAGCTCCATCCCGG GCGGCGGCCCGGC ATACGACA GCCCGGCCGCCGC TTTCCCTGCCCGTTT Daro_2797 3003124 - 3003672 + | NAD(P)H dehydrogenase (quinone):NADPH-dependent FMN reductase TERM 2736 3003718 - 3003737 + T 95 -6.3 -5.40072 | opp_overlap 3003717, overlap 3003708 3003706 TCTGCCGGGAAAACC CCCGTCC TTTTTC GGTCGGG TTTTTTTAAAAGACC TERM 2737 3003834 - 3003807 - T 86 -12.2 -3.55622 | gap 1, opp_overlap 3003805 TTCAAGCTCCGGAAA TTCAAGCGC-GAT TCA ATCAGCGCTTGAA CAATTCTTTCAGGAA Daro_2798 3004743 - 3003823 - | response regulator receiver Daro_2799 3006060 - 3004792 - | metal-dependent phosphohydrolase TERM 2738 3005921 - 3005906 - G 78 -2.4 -5.10497 | opp_overlap 3005913, overlap 3005908 3005910 AACGCATCGAAAAAA CCCAGC AGGC GCCGCG ACTCTTCCATGGCCA Daro_2800 3006201 - 3007271 + | secretion protein HlyD Daro_2801 3007274 - 3010360 + | heavy metal efflux pump CzcA Daro_2802 3010353 - 3010655 + | hypothetical protein TERM 2739 3011037 - 3011013 - g 70 -9.9 -3.53012 | opp_overlap 3011015 3011033, overlap 3011014 TCGCGCTGGCCGAAA CCGCGCATGGC GAT GCCTTGCACGA AAACAGCCGTAACCT Daro_2803 3010652 - 3011896 + | Outer membrane efflux protein TERM 2740 3012001 - 3011990 - f 88 -2.2 -5.53436 | ATAGAATAGAAAAAA GCCT CTGG AGAC TACCATGTCCATCGC Daro_2804 3012006 - 3012389 + | hypothetical protein TERM 2741 3012684 - 3012656 - gf 70 -4.4 -4.4891 | gap 1, overlap 3012657 CCGACGACGAGAAAA CCGCCTGC-GCCG AATG CGGCTACTGGCGC CTGCATTTCTGGCTG Daro_2805 3012349 - 3013080 + | hypothetical protein Daro_2806 3013208 - 3014020 + | hypothetical protein Daro_2807 3015691 - 3014180 - | Acetyl-CoA hydrolase/transferase TERM 2742 3014222 - 3014244 + g 82 -9.1 -4.42062 | overlap 3014242 CAGGTGCCAGCTGAG CGCCTCGTC GAGCA GATGGGGCG TTTGTTTGCCCGGTG TERM 2743 3015772 - 3015755 - R 100 -9.8 -5.50499 | CCAGACCGAAAAAAA GCCCGC ACGGTG GCGGGC CAAATCCAGATCCTA TERM 2744 3015926 - 3015972 + r 88 -11.5 -3.74872 | overlap 3015927 TTGGCTGGCTTCGAT TCGGCAGGAGCAGCCGGTT-CGG CAG CCGGAGCCGGC-GCGTCAGCCGG TTTGCTGAGGTCAGT TERM 2745 3015927 - 3015971 + r 78 -12.8 -2.84602 | overlap 3015926 TGGCTGGCTTCGATT CGGCAGGAGCAGCCGGTT-CGG CAG CCGGAGCCGGC-GCGTCAGCCG GTTTGCTGAGGTCAG Daro_2808 3016119 - 3015907 - | hypothetical protein TERM 2746 3016029 - 3016049 + g 78 -4.6 -4.84182 | gap 1, overlap 3016020 3016019 GGCTAGGCGGCGTTG CCGGCG-GC GGCA GCACGGCGG TTTCTTCTTTTTTGG TERM 2747 3016946 - 3016958 + G 80 -10.5 -4.07885 | CGGGTTTGATGCCGA GCGCG GAC CGCGC TTTTCCAACGCGGTG Daro_2809 3016248 - 3017195 + | LysR family transcriptional regulator Daro_2810 3017198 - 3017569 + | hypothetical protein TERM 2748 3017648 - 3017618 - T 80 -11.9 -3.28416 | gap 1, opp_overlap 3017620, overlap 3017620 CACCATTCACACGAA CAGGAGCC-GGGAC TTGC GTCCCAGGCTCCTT TTTTATTGCACGGCT TERM 2749 3017646 - 3017620 - T 95 -14.5 -3.20573 | gap 1, opp_overlap 3017620, overlap 3017618 CCATTCACACGAACA GGAGCC-GGGAC TTGC GTCCCAGGCTCC TTTTTTATTGCACGG TERM 2750 3017620 - 3017646 + T 100 -14.5 -5.4505 | gap 1, opp_overlap 3017618 3017620 CCATTCACACGAACA GGAGCC-GGGAC TTGC GTCCCAGGCTCC TTTTTTATTGCACGG Daro_2811 3020757 - 3017686 - | PAS TERM 2751 3019988 - 3019967 - G 73 -5.1 -4.67353 | gap 1, overlap 3019968 3019969 GTATCCATCGAAAAA TCGCCCTGCC CCA GGC-GGACAA TCAATGAGCGCACAT Daro_2812 3020940 - 3021344 + | hypothetical protein Daro_2813 3021346 - 3021807 + | hypothetical protein TERM 2752 3022096 - 3022082 - g 71 -9.2 -3.8377 | overlap 3022092 AACCGGCACATCAAA CCGGGC ACA ACCCGG CCGGCGGCTGGGCCA Daro_2814 3021811 - 3022416 + | cytochrome B561 TERM 2753 3022481 - 3022499 + G 79 -8.8 -4.15453 | opp_overlap 3022455, overlap 3022465 3022482 3022497 GCGACGGCTTGACCG TCGGCTTG CGT CAGGCCGG TTTTGCCGTCGATTG Daro_2815 3022429 - 3023085 + | response regulator receiver:transcriptional regulatory protein, C-terminal Daro_2816 3023096 - 3024445 + | sensor histidine kinase TERM 2754 3025344 - 3025360 + G 76 -6.5 -4.45083 | CCTGCAACTGATCCG TCAGGGC CGC GACCTGA TTTTCTACATATCCC Daro_2817 3024514 - 3025482 + | hypothetical protein Daro_2818 3026792 - 3025578 - | hypothetical protein Daro_2819 3027330 - 3026899 - | hypothetical protein TERM 2755 3027436 - 3027420 - H 75 -7.2 -4.33165 | TTAAATCCACTAAAA GGCACG CATAC CGCGCC AAGCCAAACATTGAC TERM 2756 3027621 - 3027632 + G 74 -5.8 -4.56597 | ACGGGTCGCCAAGGC GGTG TCAG CACC TTTTTCAGCGCGGCC Daro_2820 3027471 - 3027983 + | YeeE/YedE TERM 2757 3027984 - 3027997 + G 76 -5.9 -4.66609 | overlap 3027985 GGAGTCGCGCCATGA TCCGG AATG CCGGG TTTTTCGATCACCTC Daro_2821 3027980 - 3028429 + | YeeE/YedE TERM 2758 3029240 - 3029228 - g 71 -6.9 -4.25104 | CCCGCTCTACGAAAA GGCGA TGG CCGCC GGCTGGCCGCTCTAC Daro_2822 3028530 - 3029822 + | AMP-dependent synthetase and ligase Daro_2823 3029819 - 3031153 + | isochorismate synthase Daro_2824 3031279 - 3033360 + | polyphosphate kinase Daro_2825 3033482 - 3035128 + | PAS:GGDEF Daro_2826 3035276 - 3035097 - | hypothetical protein TERM 2759 3035246 - 3035208 - G 88 -13.8 -3.63694 | overlap 3035209 ATCGAGTTCGAACAA GTCGAGATTGACGCCCAG CGC CAGGGCGCCAATCACGAT CAGCGCTATCGATAC TERM 2760 3035245 - 3035209 - G 84 -17.3 -2.77895 | overlap 3035208 TCGAGTTCGAACAAG TCGAGATTGACGCCCAG CGC CAGGGCGCCAATCACGA TCAGCGCTATCGATA Daro_2827 3037524 - 3035302 - | RelA/SpoT protein Daro_2828 3037636 - 3038520 + | hypothetical protein Daro_2830 3040009 - 3039236 - | Alpha/beta hydrolase fold Daro_2829 3038517 - 3039302 + | hypothetical protein TERM 2761 3039309 - 3039325 + gT 71 -9.4 -3.55622 | GCCTCCTGATCGCGC TGCGGC GAATG GCCGCA TTTCGGCAGCTTCAG Daro_2831 3040860 - 3040006 - | Alpha/beta hydrolase fold Daro_2832 3043202 - 3040884 - | ComEC/Rec2-related protein:DNA internalization-related competence protein ComEC/Rec2 Daro_2833 3043220 - 3043768 + | hypothetical protein Daro_2834 3045761 - 3043746 - | histidine kinase, HAMP region: chemotaxis sensory transducer Daro_2835 3046523 - 3045846 - | lipoprotein releasing system, ATP-binding protein Daro_2836 3047763 - 3046516 - | LolC/E family lipoprotein releasing system, transmembrane protein Daro_2837 3047833 - 3048870 + | hypothetical protein Daro_2838 3048867 - 3050567 + | RecJ exonuclease TERM 2762 3050588 - 3050572 - T 100 -10.8 -5.45652 | ATCTGGAATAAAAAA GGGGGC TGCAC GCCCCC TGGTAGCGGATCACT Daro_2839 3051625 - 3050615 - | dihydroorotate dehydrogenase 2 TERM 2763 3050707 - 3050719 + g 71 -9.1 -3.83026 | TGGGCGAGTTTTGCT GGCTC ATC GAGCC TTTCATCTGGGCCAC Daro_2840 3055256 - 3051618 - | pyruvate:ferredoxin (flavodoxin) oxidoreductase TERM 2764 3053716 - 3053702 - G 74 -7 -4.3129 | overlap 3053703 3053704 TATTGAGCAGGAAAA CCGCGC CCG GCGCCG CGTGCCCCAGCAAAT TERM 2765 3055437 - 3055396 - R 84 -7.4 -4.66609 | gap 1 TATGCCATCTAAAAA CAGGCGAAAATC-GCTACC GGGAA GTCAGCCGATTTTTGCCTG CAAATAGGTATCGAC Daro_2841 3057564 - 3055420 - | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) TERM 2766 3056788 - 3056777 - GR 70 -3.6 -4.67943 | overlap 3056780 TCGTAATAGAGAAAA GACC CGTC GGCC GATCGAACGGCATGG TERM 2767 3057086 - 3057069 - GR 81 -6.9 -4.62471 | opp_overlap 3057070, overlap 3057070 CCGAATTTTCAAAAA TGCTGCG ATAG CGCAGCT CCGTTTCTGTTAACT TERM 2768 3057085 - 3057070 - GR 72 -10.4 -3.37 | opp_overlap 3057070, overlap 3057069 CGAATTTTCAAAAAT GCTGCG ATAG CGCAGC TCCGTTTCTGTTAAC TERM 2769 3057478 - 3057460 - GR 72 -6.7 -4.17762 | gap 1, overlap 3057461 GAGCTTGGAAAACAA GGTCGCCA TGGC TGGCG-CC TGCAGCAAGGCGGAG Daro_2842 3058444 - 3057530 - | hypothetical protein TERM 2770 3058126 - 3058151 + gr 70 -3.9 -4.61231 | overlap 3058125 GCTCATTCAGGGTCA GGCAGGGGT GCACCCTA GCCCCTTCC TTTTTGGCAATATCG TERM 2771 3058399 - 3058377 - GR 70 -6.9 -4.10188 | overlap 3058366 TAGAGCCAGAAAGAA CTGGCACCG ACCAG CAGGGCCAG CAGGCCTGTCAAAAA Daro_2843 3059630 - 3058437 - | chemotaxis sensory transducer TERM 2772 3059324 - 3059280 - G 71 -7.8 -4.06179 | overlap 3059282 GGCAAAAGTCAGAAA CAGGCCGGACAG-GGAACGCGC CAT GC-CGTTCAGCCGTTCGGCCAG AGGAGCCAAGAGGCC Daro_2844 3060051 - 3061028 + | peptide chain release factor 2 TERM 2773 3061184 - 3061140 - g 77 -14.3 -2.72463 | gap 1 ACCGACCCGCAAGCA CTGGTCGACCGCGG-CGACG CCATCT CCCCGGCCTCGGTCGACCAG GCCAAGCACCTTGTC Daro_2845 3061047 - 3062276 + | hypothetical protein Daro_2846 3062286 - 3062615 + | hypothetical protein Daro_2847 3064906 - 3062612 - | PAS TERM 2774 3064125 - 3064111 - G 71 -9.2 -3.8211 | overlap 3064114 CCTGACCGACAACAA CGACGC CAA GCGCCG TGGCCGCCAGCAACA Daro_2848 3065073 - 3066578 + | lysyl-tRNA synthetase, class-2 TERM 2775 3066609 - 3066656 + F 78 -11.2 -3.51232 | gap 1, overlap 3066604 3066638 GCTTGCCAACTCGGC GTTGCCGGAGACC-TTGCATAGC GCT GCTATGCGGCGGCCACCGGCGCC TTGATTTGGCGGCGC Daro_2849 3066703 - 3067200 + | hypothetical protein TERM 2776 3067656 - 3067682 + G 74 -3.7 -4.7497 | gap 1 GCGGCAACGCAACTG CGC-TCAATCGA TGCC TCGGTCGATGCG TTTTTCCTCGATGGC TERM 2777 3068520 - 3068539 + G 73 -10.6 -3.56594 | overlap 3068521 GTACTGGTCATGGCC AGCGGGGC TGCC GCCCCGCG TTTCGAACAGTTTGC TERM 2778 3068521 - 3068538 + G 73 -14.1 -2.73635 | overlap 3068520 TACTGGTCATGGCCA GCGGGGC TGCC GCCCCGC GTTTCGAACAGTTTG mnmC 3067200 - 3069134 + | 5-methylaminomethyl-2-thiouridine methyltransferase Daro_2851 3069248 - 3070519 + | O-acetylhomoserine/O-acetylserine sulfhydrylase TERM 2779 3070558 - 3070542 - f 84 -10.8 -3.75153 | opp_overlap 3070542 CGCCCCCAATTTAAA CCCGGC CGCGT GCCGGG TTTTTTATTGCTCGT TERM 2780 3070542 - 3070558 + F 100 -10.8 -5.52023 | opp_overlap 3070542 CGCCCCCAATTTAAA CCCGGC CGCGT GCCGGG TTTTTTATTGCTCGT TERM 2781 3070976 - 3070998 + G 77 -3.3 -4.93877 | opp_overlap 3070995, overlap 3070995 3070997 TACCGCCGACGACCC GGTCATGCG GGAAA CACAGGACC TTTTCTTTGATGAGG Daro_2852 3070593 - 3071600 + | hypothetical protein Daro_2853 3071851 - 3071606 - | hypothetical protein TERM 2782 3071777 - 3071765 - G 95 -6.9 -5.42131 | overlap 3071769 GAACCAGATAAAAAA GCCAG CTG CCGGC AACATCATCAGTGTG Daro_2854 3072642 - 3071848 - | hypothetical protein Daro_2855 3073919 - 3072672 - | HDIG Daro_2856 3075040 - 3073925 - | AFG1-like ATPase TERM 2783 3075112 - 3075088 - R 100 -13.6 -5.04249 | gap 1, opp_overlap 3075088 TTGCCAAAAAACAAA GGCGGG-TGCG TTTC CGCAACCCGCC TTTTGAGCAGCAAAC TERM 2784 3075088 - 3075112 + r 100 -13.6 -4.07568 | gap 1, opp_overlap 3075088 TTGCCAAAAAACAAA GGCGGG-TGCG TTTC CGCAACCCGCC TTTTGAGCAGCAAAC Daro_2857 3076559 - 3075135 - | dihydrolipoamide dehydrogenase TERM 2785 3076497 - 3076480 - G 89 -6.9 -5.03145 | CAAGCGGCCAAAAAA CCGAGCT GCGA AGCACGG ATGGCAGCGATGTAG TERM 2786 3076621 - 3076592 - R 100 -18.6 -4.13014 | overlap 3076608 TTCAGATGTGCAAAA GCGCCAGCGCCC AAAACG GGACGCTGGCGC CGGCAAACGTCGATT Daro_2858 3077858 - 3076635 - | dihydrolipoamide acetyltransferase kgd 3080720 - 3077883 - | alpha-ketoglutarate decarboxylase TERM 2787 3080244 - 3080285 + g 74 -11.7 -3.53012 | gap 1, opp_overlap 3080257 ATAAGTCTGCTTCAG GGTTTGCAGGATATCGCCAA GGG TTGCCGAT-TCCGGCAAGCC TTTCAAGGAACCAAC TERM 2788 3080794 - 3080817 + r 100 -9.4 -5.4505 | opp_overlap 3080796, overlap 3080795 3080796 CTCCACGGGTAAAAA AAGGGCGGCC ACAC GGCCGCCCAA TTTTTTCTTAGCCGC TERM 2789 3080795 - 3080816 + r 100 -12.9 -3.86307 | opp_overlap 3080796, overlap 3080794 3080796 TCCACGGGTAAAAAA AGGGCGGCC ACAC GGCCGCCCA ATTTTTTCTTAGCCG TERM 2790 3080815 - 3080796 - R 100 -16.4 -5.42259 | opp_overlap 3080795 3080794 3080796 CCACGGGTAAAAAAA GGGCGGCC ACAC GGCCGCCC AATTTTTTCTTAGCC TERM 2791 3080796 - 3080815 + r 100 -16.4 -2.91061 | opp_overlap 3080796, overlap 3080795 3080794 CCACGGGTAAAAAAA GGGCGGCC ACAC GGCCGCCC AATTTTTTCTTAGCC Daro_2860 3082123 - 3080825 - | citrate synthase TERM 2792 3082092 - 3082071 - G 70 -3.7 -4.69664 | opp_overlap 3082071, overlap 3082063 GACATGATCGAAAAA TCGACGG GAGCCTGT CCATCGA TTGATAAAGTTGCCT TERM 2793 3082205 - 3082172 - R 82 -2.5 -5.42259 | gap 1, opp_overlap 3082174, overlap 3082173 3082174 GCACTGCCAAAAAAA GTGGTTAACGTTCCTA AGT TA-GAACGTCAACCTT ACTCAACTCTTACGA Daro_2861 3082450 - 3082208 - | hypothetical protein sdhB 3083160 - 3082450 - | succinate dehydrogenase iron-sulfur subunit Daro_2863 3084957 - 3083173 - | succinate dehydrogenase subunit A Daro_2864 3085307 - 3084960 - | succinate dehydrogenase subunit D Daro_2865 3085693 - 3085304 - | succinate dehydrogenase subunit C TERM 2794 3085614 - 3085583 - G 75 -8 -4.21343 | overlap 3085586 CGGAAGACAGAGAAA CAGTCCTACACCGC TAAC GCGATGCAGAATTG AAACTTTGCCAGGCA Daro_2866 3086583 - 3085828 - | GntR family transcriptional regulator TERM 2795 3086150 - 3086133 - G 74 -3.3 -4.75404 | overlap 3086134 AAATCTGATCAAAAA CCACCGG CTCA CCGTTGA AACGCAGCAGGCGTT TERM 2796 3086263 - 3086248 - G 85 -4 -5.40072 | gap 1, opp_overlap 3086248, overlap 3086250 GGTTTCGCAAAAAAA TG-GGTC ACT GACCGCA TGCGTTGCCTTGCCA TERM 2797 3087299 - 3087318 + G 75 -7.8 -4.20516 | opp_overlap 3087297 3087307, overlap 3087316 CCTGTCGCAACTAGC CGGCAAGA CCGG TCGTGCCG TTTCTTCCCTGAAGA Daro_2867 3086784 - 3087770 + | malate dehydrogenase TERM 2798 3087823 - 3087799 - f 75 -11.3 -3.06183 | opp_overlap 3087800 CTTAGCTTCATTGAA GGGCCGCGGTA AAA TGCCGCGGCCT TTTTCATTTACGGGT TERM 2799 3087800 - 3087822 + F 100 -17 -4.98531 | opp_overlap 3087799 TTAGCTTCATTGAAG GGCCGCGGTA AAA TGCCGCGGCC TTTTTCATTTACGGG TERM 2800 3087954 - 3087934 - g 74 -5.3 -4.56597 | GCCGGCTCGGAAAAA CTGATGCGC AAG GCACTCCAG TTGCAAAAGGAGCTA Daro_2868 3087847 - 3088830 + | malyl-CoA lyase or citrate lyase, beta subunit TERM 2801 3089491 - 3089529 + G 79 -9.5 -4.1899 | gap 1, opp_overlap 3089493, overlap 3089492 GCGACTGGACATAAA AACGCCAGTGT-CCGGCG AGTT CGCCGCCACACTGGCGCG TTTTGGCTGGCCTGG TERM 2802 3089492 - 3089528 + G 72 -13 -3.11073 | gap 1, opp_overlap 3089493, overlap 3089491 CGACTGGACATAAAA ACGCCAGTGT-CCGGCG AGTT CGCCGCCACACTGGCGC GTTTTGGCTGGCCTG TERM 2803 3089527 - 3089493 - g 100 -16.5 -4.9792 | gap 1, opp_overlap 3089492 3089491 GACTGGACATAAAAA CGCCAGTGT-CCGGCG AGTT CGCCGCCACACTGGCG CGTTTTGGCTGGCCT Daro_2869 3088823 - 3089551 + | tRNA pseudouridine synthase C Daro_2870 3089988 - 3089548 - | CBS TERM 2804 3089669 - 3089640 - G 79 -12.1 -3.53224 | overlap 3089641 3089643 CATCCCTGGCGGAAA CCATTCCGAGCGG CGCG CCGCTCGGATCGA CCACCGGCACATGGC TERM 2805 3089668 - 3089641 - G 73 -13.4 -2.71791 | overlap 3089640 3089643 ATCCCTGGCGGAAAC CATTCCGAGCGG CGCG CCGCTCGGATCG ACCACCGGCACATGG TERM 2806 3089666 - 3089643 - G 70 -12.4 -2.90496 | overlap 3089641 3089640 CCCTGGCGGAAACCA TTCCGAGCGG CGCG CCGCTCGGAT CGACCACCGGCACAT Daro_2871 3090586 - 3090149 - | hypothetical protein Daro_2872 3091787 - 3090591 - | hypothetical protein TERM 2807 3091856 - 3091833 - R 100 -12.5 -5.64421 | opp_overlap 3091832 ACCGCAAATAAAAAA GGCACACGA AATGTA TCGTGTGCC CTTGAATCAGTCAGA Daro_2873 3093119 - 3091872 - | 2-nitropropane dioxygenase, NPD Daro_2874 3093287 - 3094447 + | NnrS Daro_2875 3094490 - 3095512 + | putative SAM-dependent methyltransferase TERM 2808 3095649 - 3095629 - g 74 -11.1 -3.53012 | opp_overlap 3095645 CTGGCCTCGGCCAAA GCCGGTGGC CTG ACCACCAGC GTCATCCGCTGGTTC TERM 2809 3096268 - 3096253 - g 80 -3.2 -5.03715 | overlap 3096254 3096255 ATCAGGCTGAAAAAA GGCC AGGAAATG GGCC GCTTCCTGCTCGGAT Daro_2876 3095542 - 3096390 + | phosphatidylserine decarboxylase TERM 2810 3096433 - 3096417 - T 76 -7.9 -4.18018 | overlap 3096392 3096420 CCTCGCTACTGAAAA GCACCGG GCG CCAGCGC ACTGCCCGGACGCAT Daro_2877 3097693 - 3096407 - | hypothetical protein TERM 2811 3098120 - 3098098 - g 84 -9.9 -4.26076 | overlap 3098110 3098112 3098113 CGATCTCGACGAAAA GCTGCTGAA GAATA TCCAGCAGC GCGATATCCAGCGCC Daro_2878 3097901 - 3098884 + | Beta-lactamase-like Daro_2879 3098886 - 3099338 + | hypothetical protein Daro_2880 3100658 - 3099426 - | GGDEF TERM 2812 3100396 - 3100372 - G 70 -5 -4.56597 | gap 1, opp_overlap 3100372 TCTCCCGCCGAAAAA GTCTGCCCGGT GGTT ACCGT-CAGAC TTACGTAGCCGATCT Daro_2881 3101776 - 3100673 - | periplasmic sugar-binding protein, putative TERM 2813 3101929 - 3101894 - R 100 -17.6 -4.07568 | opp_overlap 3101899, overlap 3101899 TGGCTCTTGCCAAAA CAAAAGCCCCTGCCGG TTTC CCGGCGGGGGCTTTTT ATTGCGTACCGCGCT TERM 2814 3101899 - 3101924 + r 100 -19.7 -5.10461 | opp_overlap 3101894 3101899 CTTGCCAAAACAAAA GCCCCTGCCGG TTTC CCGGCGGGGGC TTTTTATTGCGTACC TERM 2815 3101924 - 3101899 - R 100 -17.5 -5.07652 | opp_overlap 3101899, overlap 3101894 CTTGCCAAAACAAAA GCCCCTGCCGG TTTC CCGGCGGGGGC TTTTTATTGCGTACC Daro_2882 3104556 - 3101968 - | bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase Daro_2883 3104999 - 3106612 + | chemotaxis sensory transducer TERM 2816 3106733 - 3106717 - T 80 -11.5 -3.29829 | opp_overlap 3106731 CACATTGGCCGACAA GGGCGGA AGC CCCGCCC GCTGACGCGCCCTGG Daro_2884 3107049 - 3106696 - | hypothetical protein Daro_2885 3107702 - 3107022 - | putative methyltransferase Daro_2886 3108658 - 3107699 - | dihydrouridine synthase, DuS Daro_2887 3108709 - 3109137 + | hypothetical protein Daro_2888 3109267 - 3110202 + | NADH ubiquinone oxidoreductase, 20 kDa subunit Daro_2889 3110199 - 3111716 + | nickel-dependent hydrogenase, large subunit TERM 2817 3114423 - 3114400 - g 100 -12.4 -4.62471 | opp_overlap 3114399 3114400 GTCAATCTCGAAAAA CTGCTCCGCG TCAT CGCCGAGCAG CTTTCACCAGGCACC Daro_2890 3111709 - 3114870 + | peptidase M52, hydrogen uptake protein TERM 2818 3114996 - 3115030 + F 82 -8.1 -4.56597 | gap 1 TATTGTCTCCTGCAG GCGACAAATCATGA CAAATAGC TCA-GATTTGTCGC TTTTTGCCAACAGAC TERM 2819 3116373 - 3116353 - g 75 -7.6 -4.15044 | overlap 3116366 TTTCGCCGGAAGAAA TGCTGCAA CGAAT CTGCAGCA TCGTGCTGCTCCGGG TERM 2820 3117313 - 3117289 - g 74 -6.3 -4.56775 | overlap 3117290 ACGCCGGCGCAAAAA TCCTGCTCGTC GAG GACGAACCGGT CAATCAGGCCATTGC Daro_2891 3115077 - 3117653 + | response regulator receiver:ATP-binding region, ATPase-like:histidine kinase A, N-terminal Daro_2892 3118860 - 3117727 - | rhodanese-like protein Daro_2893 3119751 - 3118978 - | hypothetical protein TERM 2821 3119456 - 3119467 + g 70 -4.4 -4.56775 | GCAAAGTCGAGGTCA TCTG CGGT CAGA TTTTTCGCAGCCAGT Daro_2894 3119839 - 3121011 + | hypothetical protein Daro_2895 3121011 - 3122372 + | aminotransferase TERM 2822 3123100 - 3123068 - g 83 -17 -2.62184 | gap 1 CGCGCGCCCAGATGA CCGT-CGCCCTGCGG CAAG CCGCCGGGCGCACGG ACAATCCACTGGCCG Daro_2896 3122479 - 3123393 + | Alpha/beta hydrolase fold TERM 2823 3123887 - 3123873 - g 100 -10 -5.00616 | CTGCGCTGGAAAAAA TGCTGG CTG CCAGCA CCGCAGCGCACAAGA TERM 2824 3124108 - 3124128 + G 74 -6.8 -4.3739 | gap 1, opp_overlap 3124108, overlap 3124108 3124109 GGGCACGCTAGGCAA G-GCCGCCG GTGT CGGTGGCGC TTTTGTCGCCGGGTC Daro_2897 3123386 - 3124549 + | 8-amino-7-oxononanoate synthase Daro_2898 3124546 - 3125259 + | alpha/beta fold hydrolase Daro_2899 3125252 - 3126040 + | biotin biosynthesis protein BioC Daro_2900 3126037 - 3126702 + | dethiobiotin synthase Daro_2901 3127026 - 3126688 - | hypothetical protein Daro_2902 3128132 - 3127080 - | response regulator receiver Daro_2903 3128185 - 3128793 + | intracellular septation protein A Daro_2904 3128793 - 3129095 + | YCII-related Daro_2905 3129092 - 3129358 + | BolA-like protein TERM 2825 3129655 - 3129639 - g 100 -9.4 -5.13741 | GGAAGCCAAGAAAAA GGGCCT GGACA AGGCCC CCAACGTCCAGGGTC Daro_2906 3129394 - 3130185 + | PpiC-type peptidyl-prolyl cis-trans isomerase TERM 2826 3130227 - 3130208 - f 76 -7.8 -4.15565 | opp_overlap 3130208 3130210 CCGAGCATGCGAAAA TGCCCACC CTTC GGTGGGTA TTTTTCTTTTGGGGG TERM 2827 3130208 - 3130227 + F 100 -10 -5.45802 | opp_overlap 3130208, overlap 3130210 CCGAGCATGCGAAAA TGCCCACC CTTC GGTGGGTA TTTTTCTTTTGGGGG TERM 2828 3130210 - 3130225 + F 90 -10.4 -4.3613 | opp_overlap 3130208, overlap 3130208 GAGCATGCGAAAATG CCCACC CTTC GGTGGG TATTTTTCTTTTGGG TERM 2829 3130339 - 3130315 - g 76 -14.3 -2.52464 | opp_overlap 3130337, overlap 3130326 CCCCGCCTGAATCGA CTGGCCAACCA GGC CGGCTGGCCAG GGACACCCCGTTCCT Daro_2907 3130251 - 3131570 + | signal transduction protein TERM 2830 3131823 - 3131801 - g 75 -7.7 -4.2704 | overlap 3131776 GCGACGATCAACAAA CCGTTGACT GTGGA AGGCAACGG CAAGGTCATCATCGA Daro_2908 3131597 - 3132865 + | periplasmic copper-binding TERM 2831 3132895 - 3132869 - T 71 -2.8 -4.77036 | overlap 3132870 3132871 GTGCAGCAGTAAAAA TGCGTCAGACGG GGG CTGCCTGACGGC TGGCAATCCCTCAGC Daro_2909 3133751 - 3132906 - | metal-dependent phosphohydrolase TERM 2832 3133772 - 3133757 - R 70 -6 -4.25104 | CTGCGTTCATGAAAA GCCTCC AGAA GGCGGC AGACTACCTGCTAAA Daro_2910 3134754 - 3133813 - | transcriptional regulator CysB-like protein TERM 2833 3135382 - 3135399 + G 72 -2.5 -4.8048 | overlap 3135384 3135385 GTCGGCGCAGGCGCA CTTGGCG TTGC CGCCCTG TTTTTCCTCTACCCA Daro_2911 3134860 - 3135660 + | hypothetical protein TERM 2834 3137328 - 3137308 - g 74 -12.5 -3.14463 | AACCGCGTTTACGAA GGCCGTGCC CAT GGCAAGGCC AAGGCTGCACAGCAG Daro_2912 3135682 - 3137355 + | nitrite/sulfite reductase, hemoprotein beta-component, ferrodoxin-like:nitrite and sulphite reductase 4Fe-4S region Daro_2913 3137355 - 3137864 + | hypothetical protein TERM 2835 3138401 - 3138380 - g 70 -5.1 -4.57341 | overlap 3138382 3138385 AATGGTCTGGAAAAA TTCAATCCG CTGT CGGACTGGA CCGAGAAGGAAGTCT Daro_2914 3137873 - 3138592 + | phosphoadenosine phosphosulfate reductase TERM 2836 3138618 - 3138632 + F 100 -8.5 -5.7946 | opp_overlap 3138618 GAGGTTTAAAAAAAA CCGGC CTCAA GCCGG TTTTTTTATTGGCAA TERM 2837 3138632 - 3138618 - f 100 -9.2 -5.76949 | opp_overlap 3138618 GAGGTTTAAAAAAAA CCGGCC TCA AGCCGG TTTTTTTATTGGCAA TERM 2838 3138960 - 3138937 - f 89 -14 -3.14344 | opp_overlap 3138931 3138942 CATCCCCTTCAGGAA GTAGACACCT GCAA AGGTGTCTAC TGAACGTTATGCGTC Daro_2915 3138992 - 3139312 + | hypothetical protein TERM 2839 3139368 - 3139316 - f 73 -12 -2.56539 | gap 2, overlap 3139315 3139313 GGCAACGCATAACAT CCCGCTCCAGCCGACCGTCAGCCAGC TAC GCTGTCTGCCG-TCGGCTG-AGCTTG CACGTTAGAGAACGA Daro_2916 3140195 - 3140632 + | hypothetical protein Daro_2917 3140915 - 3141541 + | hypothetical protein Daro_2918 3142456 - 3141977 - | BadM/Rrf2 family transcriptional regulator TERM 2840 3142621 - 3142609 - g 78 -2.7 -5.02074 | GCAGCCCGCAAAAAA GATCT TTG AAATC AAACAGGTCGTCGAT Daro_2919 3142586 - 3143989 + | 4Fe-4S ferredoxin, iron-sulfur binding TERM 2841 3144170 - 3144160 - f 74 -2.4 -5.04385 | CATATTCCTAAAAAA GCCC CAG GCGC CTGCACCGCGGAATC TERM 2842 3146374 - 3146355 - g 71 -7.8 -4.09739 | opp_overlap 3146368 GCAACTCGGGGAAAA GGCCGG TACCGACG CCGGCC TGCGCCGCCTGTTCG TERM 2843 3146996 - 3146965 - g 85 -7.2 -4.8269 | overlap 3146987 GACAACGAGGAAAAA CCGTTGCTGGTC GGTGGCAA GACCGGCACCGG CGACCACCGCTCCAA Daro_2920 3144223 - 3147249 + | hypothetical protein TERM 2844 3147282 - 3147317 + F 100 -17.6 -3.72893 | opp_overlap 3147282 CATCCATCCCGAAAA GCGGGAATCCAGACGA CCGA TCGACTGGACTCCCGC TTTCGTGGAAACATC TERM 2845 3147317 - 3147282 - f 100 -19.8 -4.11692 | opp_overlap 3147282 CATCCATCCCGAAAA GCGGGAATCCAGACGA CCGA TCGACTGGACTCCCGC TTTCGTGGAAACATC TERM 2846 3147389 - 3147358 - f 77 -6 -4.64144 | gap 1, opp_overlap 3147360, overlap 3147359 3147361 AATAATCCGTAAAAA CCAC-ACTTTGCTGC GGC GCAACAAAATGGTAG TCTTTGACGCATAAA TERM 2847 3147385 - 3147361 - f 70 -10.1 -3.24823 | opp_overlap 3147360, overlap 3147359 3147358 AATCCGTAAAAACCA CACTTTGCTGC GGC GCAACAAAATG GTAGTCTTTGACGCA TERM 2848 3147674 - 3147634 - g 72 -11.8 -3.37796 | gap 1, opp_overlap 3147629 3147667 3147669 TTCGATGACCGACAA CACCGGCACCCGAGCCGTG ATCA CCCAGCT-GGGCACCGGCG ATGTCTTCGGTGTGA Daro_2921 3147431 - 3149749 + | acetate kinase TERM 2849 3149772 - 3149801 + T 100 -20.9 -3.51232 | opp_overlap 3149772, overlap 3149775 GTCACTGGATAAAAA CAAGGGGATGACC GCCA GGTCATCCCCTTG TTCGTTTAGAGCCAG TERM 2850 3149801 - 3149772 - T 100 -20.9 -4.85599 | opp_overlap 3149772 3149775 GTCACTGGATAAAAA CAAGGGGATGACC GCCA GGTCATCCCCTTG TTCGTTTAGAGCCAG TERM 2851 3149775 - 3149798 + T 100 -16.8 -3.89354 | opp_overlap 3149772, overlap 3149772 ACTGGATAAAAACAA GGGGATGACC GCCA GGTCATCCCC TTGTTCGTTTAGAGC Daro_2922 3150190 - 3149807 - | hypothetical protein Daro_2923 3151593 - 3150241 - | two component, sigma54 specific, Fis family transcriptional regulator TERM 2852 3150567 - 3150584 + g 70 -9.9 -3.49475 | opp_overlap 3150564, overlap 3150579 CCTGCGGCGAAAGGC TGGGCAA AGCC TTGCCCA TTCTCTGGGCGTGAG Daro_2924 3153073 - 3151586 - | sensor histidine kinase TERM 2853 3152400 - 3152412 + g 100 -9.1 -5.02074 | TCGATTCTCCCTGCC TCGCC CTT GGCGA TTTTTTGCAGGCTCC TERM 2854 3152704 - 3152681 - G 72 -11 -3.27786 | TTGAAAATCGAGCAA TCTGTCGCGA TATG TCGCGACCGA ACCGACCTCTTCAGC TERM 2855 3153051 - 3153066 + g 81 -7.6 -4.61824 | opp_overlap 3153050 3153044 TTGCAATATGAAACG GTATGC AGAT GCATAC TTTTCATTGTTATTC TERM 2856 3153224 - 3153202 - H 70 -4.8 -4.50943 | overlap 3153205 3153207 3153210 CAACAACTTACAAAA GAACACGATG GCA CACCATGTGC TAGCAATGAATGGTC TERM 2857 3153221 - 3153205 - H 70 -5.1 -4.34789 | overlap 3153202 3153207 3153210 CAACTTACAAAAGAA CACGATG GCA CACCATG TGCTAGCAATGAATG TERM 2858 3153822 - 3153812 - g 75 -2.4 -5.00884 | AGCCTGGGCAAAAAA TCGC CAC GCGG ACATTGCCTATCCTG Daro_2925 3153318 - 3153845 + | OmpA/MotB Daro_2926 3153919 - 3154452 + | hypothetical protein TERM 2859 3154758 - 3154746 - gf 84 -4.1 -5.19879 | TCTCAAAGACAAAAA GATAG ATT CCATC GGCGTTTAGTGAGAT Daro_2927 3154407 - 3154970 + | hypothetical protein Daro_2928 3154967 - 3155407 + | hypothetical protein Daro_2929 3156798 - 3155467 - | hypothetical protein Daro_2930 3157211 - 3156858 - | hypothetical protein TERM 2860 3156974 - 3156985 + g 73 -4.4 -4.62772 | CAACCTCTTTACTGC CATC GGTT GATG TTTCTTTCATTTCAA Daro_2931 3157789 - 3157400 - | carboxymuconolactone decarboxylase TERM 2861 3159026 - 3159013 - g 71 -8.1 -4.12902 | CAACGATCTGGAAAA CGGCA AGAC TGCCG ACGACTACACCTGGC Daro_2932 3157955 - 3159691 + | hypothetical protein TERM 2862 3159728 - 3159708 - T 100 -12.5 -5.57054 | opp_overlap 3159715 AATAAGCGAAAAAAA GGGCGTCGC CAC GCGATGCCC TCGGCGTGAGCTTTC Daro_2933 3161369 - 3159747 - | histidine kinase, HAMP region: chemotaxis sensory transducer TERM 2863 3159810 - 3159840 + g 81 -8.2 -4.65916 | overlap 3159794 3159793 GCCCAGTCGATGGGC CGACGAGGCGGT TTCATCC GCCGCCGCGTTG TTTTCTTCCGCTGAC TERM 2864 3161014 - 3161032 + g 77 -8.2 -4.41047 | TGCGCCGCACGCGTT TCCTTGAT GTG ATCGAGGA TTTTCCTTCCCCGCT TERM 2865 3161419 - 3161388 - R 71 -3.2 -4.82901 | opp_overlap 3161388, overlap 3161409 CCCCCCCTAGAAAAA GAAAAACAGAAT TCAACAAC ATTGTGTTTTTC TTATACACAATCAAA TERM 2866 3161522 - 3161506 - R 71 -9.3 -3.53224 | GATCGTGGTCGCAAA GCCCTCC GCA GGCGGGC GCAAGGCACGACAAA Daro_2934 3164485 - 3161618 - | PAS TERM 2867 3164025 - 3164002 - G 74 -3.8 -4.83615 | gap 1, overlap 3164003 3164004 CATCCGGCAGAAAAA CCGGCAAGCGT GCC ACGAT-GCCGA CGCCGCCCTGAACCA TERM 2868 3165338 - 3165324 - g 85 -2.8 -5.4505 | CGCTGGAAGAAAAAA CAGC CGAATTC GCTG ACATCATCAAGATCG fumC 3164792 - 3166198 + | fumarate hydratase TERM 2869 3166891 - 3166866 - g 78 -13.3 -3.21099 | gap 1, overlap 3166869 TTGGGGCATCATCAA CGACCCGGCCTG CTG CAAGCCGGG-CG ACCCGGACTGCCCGG TERM 2870 3166889 - 3166869 - g 77 -14.7 -2.80016 | overlap 3166866 GGGCATCATCAACGA CCCGGCCTG CTG CAAGCCGGG CGACCCGGACTGCCC TERM 2871 3168191 - 3168179 - g 70 -10.5 -3.56092 | CGAGCATCCCGGAAA GCGCC GGC GGCGC CTTCAAGAACCGCGA TERM 2872 3168794 - 3168809 + G 80 -11.8 -3.76402 | AGGTGAAAATTGCGG CCGGCG CCAG CGCCGG TTTCCTGAATGGGCT TERM 2873 3168915 - 3168888 - g 80 -9.8 -4.08216 | CGAGCTGCTGGAAAA GGCCGGCCGCAA GGCC CTGCAGCCAACC CTGCTGGAGATCGCC TERM 2874 3168952 - 3168986 + G 74 -7.2 -4.36914 | gap 1, opp_overlap 3168950 3168981 3168982 GTTCTGAAAAATCCG TCGCGCTTCGTCGAG ATCCTG CGTGA-GAAGCGCGA TTTTCTCAGCGCGAA Daro_2936 3166486 - 3169107 + | hypothetical protein Daro_2937 3169126 - 3170028 + | hypothetical protein TERM 2875 3170708 - 3170726 + G 82 -11.7 -3.86897 | AGGTCGCTGGCCTGC TCGCGGC CAGCC GCCGCGA TTTCTACGGCATCCC TERM 2876 3170842 - 3170880 + G 74 -12.3 -3.14344 | overlap 3170844 CGCGAAGGCTGCGGC GAGGCCGACCTGGCGGC CCGCC GCTGTCGGGCCGGCCTG TTCGTCGCCGCCCTG TERM 2877 3170844 - 3170878 + G 82 -14.9 -3.13403 | overlap 3170842 CGAAGGCTGCGGCGA GGCCGACCTGGCGGC CCGCC GCTGTCGGGCCGGCC TGTTCGTCGCCGCCC TERM 2878 3171005 - 3170977 - g 86 -13.9 -3.44146 | gap 1, overlap 3170951 CCGCTGCAGAAGGAA GCCAG-CCGCCG CTGGCC CGGCGGGCTGGC CATTGGCAACCCGGA Daro_2938 3170032 - 3172200 + | hypothetical protein TERM 2879 3173724 - 3173692 - g 72 -12.8 -3.06796 | gap 1, opp_overlap 3173692, overlap 3173710 GCCTACGGCACCGAA CT-GAGCAGCGCTGA AAAA TCGGCGCTGCTCGAG TTCCTGAAGACATTC TERM 2880 3173692 - 3173724 + G 82 -15 -3.14881 | gap 1, opp_overlap 3173692 3173710 GCCTACGGCACCGAA CT-GAGCAGCGCTGA AAAA TCGGCGCTGCTCGAG TTCCTGAAGACATTC TERM 2881 3173723 - 3173710 - g 70 -3.1 -4.58663 | gap 1, opp_overlap 3173692, overlap 3173692 AGCAGCGCTGAAAAA TCG-GC GCT GCTCGA GTTCCTGAAGACATT Daro_2939 3172225 - 3173742 + | hypothetical protein Daro_2940 3173757 - 3175235 + | hypothetical protein TERM 2882 3175799 - 3175776 - g 76 -7.4 -4.56597 | gap 1, opp_overlap 3175787, overlap 3175778 CCCTGGTGGCAAAAA CACCGCC-TGG CGG CCATGGCGGCA GCAGGCACGCTGCTG TERM 2883 3175797 - 3175778 - g 78 -10 -3.90048 | gap 1, opp_overlap 3175787, overlap 3175776 CTGGTGGCAAAAACA CCGCC-TGG CGG CCATGGCGG CAGCAGGCACGCTGC Daro_2941 3175266 - 3176126 + | hypothetical protein TERM 2884 3176686 - 3176715 + G 95 -12.1 -4.15044 | gap 1, opp_overlap 3176668, overlap 3176688 GCTGGCCTTCGCCCT GCCCGATGGCGTCG ATC CGACGCCG-CTGGC TTTCTTCCGGGACGC TERM 2885 3176688 - 3176714 + G 72 -12.2 -3.08812 | opp_overlap 3176668, overlap 3176686 TGGCCTTCGCCCTGC CCGATGGCGTCG ATC CGACGCCGCTGG CTTTCTTCCGGGACG Daro_2942 3176123 - 3177400 + | hypothetical protein TERM 2886 3177500 - 3177531 + T 88 -11.7 -3.72695 | gap 2, opp_overlap 3177499 3177498 CTCACCTAAAAATTT CGGCAGGCC-T-GGA TGTA TCCGAAGGCCTGCCG TTTGCTGCGGAACGT Daro_2943 3178102 - 3177584 - | copper/Zinc superoxide dismutase Daro_2944 3178304 - 3179233 + | sulfate adenylyltransferase subunit 2 Daro_2945 3179233 - 3180513 + | sulfate adenylyltransferase subunit 1 TERM 2887 3180528 - 3180568 + T 100 -25.8 -2.90763 | opp_overlap 3180539, overlap 3180533 3180539 AGCGTCGCTGCCCAA CCCAATAAAAACGCCTCC ATTAC GGAGGCGTTTTTATTGGG TCTCTGGAATCTGGC TERM 2888 3180533 - 3180563 + T 100 -17.1 -3.16177 | opp_overlap 3180539, overlap 3180528 3180539 CGCTGCCCAACCCAA TAAAAACGCCTCC ATTAC GGAGGCGTTTTTA TTGGGTCTCTGGAAT TERM 2889 3180539 - 3180557 + T 100 -11.7 -5.12068 | opp_overlap 3180539, overlap 3180533 3180528 CCAACCCAATAAAAA CGCCTCC ATTAC GGAGGCG TTTTTATTGGGTCTC TERM 2890 3180557 - 3180539 - T 100 -12.4 -5.13741 | opp_overlap 3180539 3180533 3180528 CCAACCCAATAAAAA CGCCTCCA TTA CGGAGGCG TTTTTATTGGGTCTC Daro_2946 3183055 - 3180722 - | response regulator receiver:ATP-binding region, ATPase-like:histidine kinase, HAMP region:histidine kinase A, N-terminal TERM 2891 3182791 - 3182841 + g 77 -8.3 -4.33153 | overlap 3182794 CGATGGCGTCGGCGA TGAGCGTTGATGGCGACTG-CGTGT TGC GCAAGGCTGTCGCCACCAGCGC-CA TTTGTTCCTGTTGGG Daro_2947 3184155 - 3183052 - | extracellular ligand-binding receptor Daro_2948 3184797 - 3184558 - | thiol-disulfide isomerase and thioredoxins Daro_2949 3185863 - 3184808 - | permease TERM 2892 3185495 - 3185480 - G 71 -7.6 -4.03413 | ACCTGCCGACAGAAA GCCAAT AAAG ATTGGC ACCGCAGAGCAAGAG Daro_2950 3186478 - 3185936 - | sigma-70 region 2 Daro_2951 3187160 - 3186621 - | hypothetical protein Daro_2952 3189105 - 3187168 - | TonB-dependent receptor Daro_2953 3189510 - 3191612 + | TonB-dependent receptor Daro_2954 3191622 - 3192452 + | hypothetical protein Daro_2955 3192452 - 3193510 + | 4Fe-4S ferredoxin, iron-sulfur binding Daro_2956 3193500 - 3194168 + | cytochrome c biogenesis protein, transmembrane region TERM 2893 3194203 - 3194228 + F 74 -10.4 -3.53091 | overlap 3194193 GCACCCGGCGCCATC CCCGTTTGCC TTTTCC GGCCAACGGG TTTCAAAGGGGAGGT Daro_2957 3194397 - 3195566 + | secretion protein HlyD Daro_2958 3195577 - 3198666 + | acriflavin resistance protein Daro_2959 3198723 - 3199298 + | hypothetical protein TERM 2894 3199454 - 3199434 - f 70 -11.1 -2.72463 | overlap 3199420 3199417 ACCGACTTGCAACGA GCCAGAGGA TTG CCCCCTGGC AAATTGCAGCCGACA TERM 2895 3199947 - 3199961 + G 91 -5.7 -5.42259 | TCATGAAGAAGCCTT TCTCG CGTTA CGAGA TTTTTTTCCGGATCG Daro_2960 3199487 - 3200059 + | response regulator receiver Daro_2961 3200071 - 3201543 + | peptidase M17, leucyl aminopeptidase, C-terminal Daro_2962 3201569 - 3202087 + | isochorismatase hydrolase TERM 2896 3202395 - 3202412 + G 78 -2 -5.09426 | gap 1 CACGCTGCTGATTCA TCCG-CA GGTGA TGACGGA TTTTTTAGACTTCCA Daro_2963 3202138 - 3202710 + | hypothetical protein Daro_2964 3202975 - 3202733 - | hypothetical protein TERM 2897 3202942 - 3202931 - G 93 -7.2 -5.22312 | ACTGACACCAAAAAA GGGC CATG GCCC CAGGACGGCTTCCTT TERM 2898 3203104 - 3203085 - R 88 -12.8 -3.58162 | overlap 3203081 TCAGTATCAAAGGAA CAGGCCGC GACT GCGGCCCG CCAATACGCTTCCCC Daro_2965 3203446 - 3203132 - | hypothetical protein TERM 2899 3203252 - 3203213 - G 89 -4.8 -5.28942 | opp_overlap 3203215, overlap 3203214 3203215 GAGGGCAAAGAAAAA GGCTTCGACCGCTTTCGG CTCG CCGGAAGCGGCAAACGTC GTCTGGCCACACTCG TERM 2900 3203417 - 3203429 + g 78 -4.7 -4.78149 | opp_overlap 3203407, overlap 3203409 AGCAACGCGCTGTGC CAGCG TAC CGCGG TTTTTAGCTTGTCCC Daro_2966 3204652 - 3203516 - | GGDEF TERM 2901 3203930 - 3203912 - G 89 -5.2 -5.29782 | CAGATCGATAAAAAA CCCGGC ATGGCGG GCCAGG TCACGGCGAGCCAGA TERM 2902 3204540 - 3204525 - G 74 -4 -4.8048 | GCTCCATAGGAAAAA TAGACA ACGA TGCCTA CCACGATCGCCGCCC TERM 2903 3205173 - 3205186 + G 81 -4.5 -4.90525 | opp_overlap 3205163 GAAATCAAGCTGATG CTGGT GCTG GCCAG TTTTGTTTACGCTTA Daro_2967 3204708 - 3205502 + | hypothetical protein Daro_2968 3205509 - 3206396 + | RarD protein TERM 2904 3206441 - 3206470 + T 70 -10.7 -2.71712 | opp_overlap 3206427, overlap 3206440 ATCGCCCGGCACTGC TTGGCGCACCAGA GGAT TCTGGTGCCCCGG ATTTACCCCAGACGC Daro_2969 3207204 - 3206473 - | RNA methyltransferase TrmH, group 3 TERM 2905 3207316 - 3207302 - R 83 -10 -4.1466 | AGCGAAGGTTCAAAA TCCCTG CAG CAGGGA GTCCTCACGGGAAAT Daro_2970 3207859 - 3207296 - | hypothetical protein TERM 2906 3207520 - 3207543 + g 84 -10.4 -4.254 | gap 1, opp_overlap 3207517 CACGATCAACCATCA GCATCA-GCGA ATC TCGCATGATGC TTTCTTCCGTCTTGA Daro_2971 3207981 - 3208847 + | hypothetical protein Daro_2972 3211280 - 3208863 - | 3'-5' exoribonuclease, VacB and RNase II:ribonuclease R TERM 2907 3209264 - 3209248 - G 76 -12.3 -3.37612 | TCGAACTGGAAGTAA TCGGAGC CCA GCTCCGA CACGTGCACCAGACC TERM 2908 3211440 - 3211421 - H 91 -12.2 -3.74519 | opp_overlap 3211421 AAGATTCGGATCAAA GGCTTCGA GCAA TCGAAGCC TTTTTTCTTTTCGGC TERM 2909 3211421 - 3211440 + H 100 -12.2 -5.79595 | opp_overlap 3211421 AAGATTCGGATCAAA GGCTTCGA GCAA TCGAAGCC TTTTTTCTTTTCGGC TERM 2910 3211695 - 3211676 - H 91 -12.2 -3.73775 | opp_overlap 3211676 GCGATTTTGATTAAA GGCCTTGT TAAA ACAAGGCC TTTTTCATTTCCGGC TERM 2911 3211676 - 3211695 + H 100 -12.2 -4.98531 | opp_overlap 3211676 GCGATTTTGATTAAA GGCCTTGT TAAA ACAAGGCC TTTTTCATTTCCGGC Daro_2973 3211847 - 3212230 + | hypothetical protein TERM 2912 3212256 - 3212240 - T 100 -11.5 -5.61881 | opp_overlap 3212240 CGCTAAAAACAAAAA CGGGCCC GAT GAGCCCG TTATTCATGCAAGTC TERM 2913 3212240 - 3212256 + T 76 -9.3 -3.72324 | opp_overlap 3212240 CGCTAAAAACAAAAA CGGGCCC GAT GAGCCCG TTATTCATGCAAGTC Daro_2974 3213590 - 3212283 - | adenylosuccinate synthetase TERM 2914 3213516 - 3213493 - G 76 -9.6 -4.07568 | gap 1, overlap 3213497 TGCCCCCCCTGAAAA CGCACCACGCC CTT GGCGTGAT-CG GTGAGCCAGTCGACG Daro_2975 3214748 - 3213594 - | ATP phosphoribosyltransferase regulatory subunit TERM 2915 3213848 - 3213838 - G 81 -8.2 -4.69027 | overlap 3213839 3213840 AAATCCATCGAAAAA CCGG TCG CCGG ACGAGCACGACCGAA Daro_2976 3214930 - 3214745 - | hypothetical protein Daro_2977 3215814 - 3214927 - | hypothetical protein TERM 2916 3215164 - 3215197 + g 84 -11.8 -4.11216 | gap 1, opp_overlap 3215163, overlap 3215167 GGCCTCGGCAACGAT GATTTCGCGCTGGCG ATCGG CGTCGGCGCG-AATC TTTTCCGCCTCGGCA TERM 2917 3215167 - 3215195 + g 90 -14.6 -3.65542 | opp_overlap 3215163, overlap 3215164 CTCGGCAACGATGAT TTCGCGCTGGCG ATCGG CGTCGGCGCGAA TCTTTTCCGCCTCGG Daro_2978 3217124 - 3215814 - | HflK Daro_2979 3218315 - 3217161 - | GTP-binding protein, HSR1-related TERM 2918 3218101 - 3218081 - G 72 -2.5 -4.77036 | overlap 3218082 GGTCATGATTAAAAA TCACCAG ATCGGCA CTGGTGG CAGCGATCATCGCCT TERM 2919 3218134 - 3218149 + g 71 -7.6 -4.13767 | opp_overlap 3218129 ATTTCATCAACCTTG CCTTTG CCGG CAAAGG TTTTCGGATCAGGAC Daro_2980 3218615 - 3218379 - | host factor Hfq engA 3220027 - 3218696 - | GTP-binding protein EngA Daro_2982 3221184 - 3220024 - | Pyrrolo-quinoline quinone TERM 2920 3220215 - 3220234 + g 76 -6.3 -4.6902 | opp_overlap 3220205 3220202 3220215 3220197, overlap 3220206 GACCACGCCGAATGA CCGGCGC AGAAAG GCGACGG TTTTTCAGCTTGTCC Daro_2983 3221822 - 3221184 - | putative transmembrane protein TERM 2921 3221281 - 3221295 + g 88 -3.4 -5.52384 | overlap 3221283 GCAGCCTTGTAGGCA GTCCGG GCT TCGGCC TTTTTTTCCTGCGCC hisS 3223117 - 3221828 - | histidyl-tRNA synthetase TERM 2922 3221981 - 3222002 + g 72 -2.9 -4.8048 | gap 1, opp_overlap 3221976 3221971, overlap 3221990 AATGATGACAGCAAA GGTCGCACCG CTG CCGT-CGGCC TTTTTCATCTGCGAC TERM 2923 3222538 - 3222554 + g 71 -6.5 -4.26076 | GACGTTTGGCATCCT CGTCGAG CAG TTCGGCG TTTTCCTCGAAATAG TERM 2924 3222744 - 3222757 + g 74 -3.7 -4.83615 | overlap 3222745 3222752 CCGACCTGGTGGAAC TGGCG ATAG CGCCC TTTTTGTGGCCGCTC ispG 3224343 - 3223114 - | 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase TERM 2925 3223446 - 3223423 - G 81 -5.2 -5.0133 | CAGCTCCTGAAAAAA GGTGCTGGTC GTCC GACCACAACC GGGACAGGCTGCAAC TERM 2926 3223960 - 3223974 + g 95 -6.4 -5.4505 | CAGTTCAACCATCTG GGCGAA TTG TTCGTC TTTTTTCTTGCCGAA Daro_2986 3225282 - 3224347 - | hypothetical protein TERM 2927 3224736 - 3224721 - G 78 -7.5 -4.59773 | CTCCAGGCGGAAAAA CCGGC TCGCTG GCCGG AACCGCAGACGTCCC Daro_2987 3226079 - 3225279 - | TPR repeat-containing protein TERM 2928 3225491 - 3225479 - G 79 -7.7 -4.56597 | GCGCCTCTTCAAAAA TACCG CGC CGGTA AAATACCTTGGCCAG Daro_2988 3227170 - 3226076 - | hypothetical protein TERM 2929 3226837 - 3226824 - G 83 -5.2 -5.08601 | CCAGTCGAACAAAAA GCGC AATCGA GCGC GCAACCGGCTTGCGT ndk 3227608 - 3227180 - | nucleoside diphosphate kinase Daro_2990 3228418 - 3227681 - | hypothetical protein TERM 2930 3228451 - 3228426 - R 100 -11.9 -5.14563 | opp_overlap 3228430 GCCCCCACCAAAAAA CAAACCCCGGC TTCC ACCGGGGTTTA TCAAGAAATGAATGT TERM 2931 3228430 - 3228447 + r 81 -9.8 -3.86346 | opp_overlap 3228426 CCACCAAAAAACAAA CCCCGG CTTCCA CCGGGG TTTATCAAGAAATGA Daro_2991 3229755 - 3228472 - | TRAP dicarboxylate transporter, DctM subunit TERM 2932 3229024 - 3229012 - G 72 -2.6 -4.73388 | AACCGCGACGAAAAA GGCA TAGAC CGCC GACATTGCAGCCGCC Daro_2992 3230534 - 3229752 - | tripartite ATP-independent periplasmic transporter DctQ TERM 2933 3230555 - 3230574 + r 81 -4.8 -5.06585 | opp_overlap 3230555, overlap 3230556 3230557 CCTCCCTCGGTAATA CCGGGGGC CGAA GCCCCCAA TTTTTATATACTTTC TERM 2934 3230557 - 3230572 + r 73 -11.8 -2.75768 | opp_overlap 3230555, overlap 3230556 3230555 TCCCTCGGTAATACC GGGGGC CGAA GCCCCC AATTTTTATATACTT Daro_2993 3231599 - 3230595 - | TRAP dicarboxylate transporter- DctP subunit TERM 2935 3231733 - 3231715 - R 100 -9.5 -5.62045 | opp_overlap 3231715 ATAGACAATAAAAAA CCGCCGA GCTAG CCGGCGG TTTGATTTAATCGAA TERM 2936 3231715 - 3231733 + r 77 -8.8 -4.10552 | opp_overlap 3231715 ATAGACAATAAAAAA CCGCCG AGCTAGC CGGCGG TTTGATTTAATCGAA Daro_2994 3233106 - 3231757 - | C4-dicarboxylate transporter DctA TERM 2937 3232230 - 3232214 - G 76 -10.1 -3.83006 | AGATTGAACGAATAA CCGGTCG GCA CGACCAG ACCAACGACGGACTT TERM 2938 3234721 - 3234705 - g 83 -3 -5.24129 | gap 1, overlap 3234707 CCGCGCTAGAAAAAA TTG-GCC TGCA GGCACAA CGGGCCGGCAAGATC Daro_2995 3233258 - 3235246 + | PAS/PAC sensor signal transduction histidine kinase Daro_2996 3235243 - 3235839 + | LuxR response regulator receiver Daro_2997 3235947 - 3236273 + | thioredoxin TERM 2939 3236388 - 3236401 + F 73 -9.5 -3.58726 | CTGCGCCCTGGCCAC CGGGC AACC GCCCG TTCTGTATCCGGCGC TERM 2940 3236575 - 3236565 - g 80 -3.2 -5.15969 | overlap 3236566 GGCCAAGGCAAAAAA TGGC GAC ACCA TCTACGGCGATGGCA rho 3236431 - 3237690 + | transcription termination factor Rho rpmE 3237789 - 3238013 + | 50S ribosomal protein L31 TERM 2941 3238037 - 3238054 + F 100 -12.7 -4.98531 | opp_overlap 3238037 AAATGCGTTATAAAA GGCAGCC GACT GGCTGCC TTTTTCATTTCCGGC TERM 2942 3238054 - 3238037 - f 100 -12.7 -4.39002 | opp_overlap 3238037 AAATGCGTTATAAAA GGCAGCC GACT GGCTGCC TTTTTCATTTCCGGC Daro_3000 3238074 - 3239696 + | hypothetical protein TERM 2943 3239703 - 3239731 + T 100 -17.5 -3.53012 | opp_overlap 3239729 CGGCGCTAAGGGCGG GCGTTGTATCCCC GTC GGGGCTACAACGC TTTCAAACGCACGCC Daro_3001 3240301 - 3239747 - | oligoribonuclease Daro_3002 3240357 - 3241607 + | peptidase M48, Ste24p TERM 2944 3241631 - 3241600 - f 77 -3 -5.16237 | gap 1, overlap 3241601 3241602 AACTTCAGGAAAAAA CCGCATGAAAC-CGA TCA TCGCGCTTCTTGCAA GTTCTCTGATCACGC Daro_3003 3241604 - 3241915 + | hypothetical protein Daro_3004 3241912 - 3242781 + | ribosome-associated GTPase TERM 2945 3243834 - 3243853 + G 70 -4.9 -4.43477 | overlap 3243835 ATGCGCTGACGTGCA AGCGGGT CTACAA ACCCGCC TTTTCCTTCGATGAC Daro_3005 3242897 - 3243982 + | response regulator receiver TERM 2946 3247224 - 3247214 - g 70 -3.2 -4.64676 | overlap 3247217 CGATCCGGAACAAAA CAAG CGC CTCG GCAAAGTCGCGGACG Daro_3006 3244155 - 3248837 + | PAS Daro_3007 3250054 - 3248846 - | hypothetical protein TERM 2947 3249184 - 3249134 - G 89 -6.6 -5.03314 | overlap 3249135 CTCAGCCGGAAAAAA CTCCCGGAGCAGGGCTGCCTTGAC ACC GTCAATGCCGGCCCGCCGCCGCAG ATGATTGGCTAGCGT Daro_3008 3251016 - 3250051 - | transglutaminase-like TERM 2948 3250814 - 3250792 - G 71 -9.2 -3.82604 | overlap 3250794 3250813 TGACCGAATGAACAA CATTTCATGC GGG GCATGAAAGG CCACCCAGGTCACCG TERM 2949 3250812 - 3250794 - G 70 -10.4 -3.4945 | overlap 3250792 ACCGAATGAACAACA TTTCATGC GGG GCATGAAA GGCCACCCAGGTCAC TERM 2950 3250836 - 3250813 - G 76 -10.2 -3.72695 | overlap 3250792 ATGCGGGGCATGAAA GGCCACCCAG GTCA CCGGGTTGCC GAAGGCATCGCGTCC Daro_3009 3253538 - 3251019 - | hypothetical protein TERM 2951 3253579 - 3253562 - R 100 -12.7 -4.77036 | opp_overlap 3253562 TTTTACCAGCAAAAA CAGGCCG TCTC CGGCCTG TTTGCGATCAACCCG TERM 2952 3253562 - 3253579 + r 88 -12.7 -3.59979 | opp_overlap 3253562 TTTTACCAGCAAAAA CAGGCCG TCTC CGGCCTG TTTGCGATCAACCCG Daro_3010 3256957 - 3253604 - | transglutaminase-like Daro_3011 3257551 - 3257120 - | glyoxalase/bleomycin resistance protein/dioxygenase TERM 2953 3257506 - 3257493 - G 73 -9.5 -3.86194 | AAGGCCTTGTAGAAA GCCCG GCTG CGGGC CAGATCGGCCACTCC TERM 2954 3257589 - 3257577 - H 71 -3.3 -4.8236 | overlap 3257578 TATCCAAAAAAATAA GTGGC AAT GCCAG TCCAGCAAAGACTTA Daro_3012 3257691 - 3257906 + | hypothetical protein Daro_3013 3257934 - 3258287 + | hypothetical protein TERM 2955 3258370 - 3258354 - f 73 -3.6 -4.75404 | AAAGCCGACCAAAAA GGACGA ACATG CCGCCC CTTCCCCGGATCTTC TERM 2956 3258692 - 3258680 - g 76 -9.1 -4.07885 | CATCGCCGGCGAAAA GACCG TGC CGGTC GTGATCCGCAGCTGC Daro_3014 3258444 - 3259364 + | ParB family protein TERM 2957 3259385 - 3259401 + F 77 -10.1 -3.57144 | opp_overlap 3259359 3259384 TTCCTGGCAAGCCAG GCCTGCT GGC AGCGGGC TTTCAGCATCGCCAG Daro_3015 3259464 - 3259928 + | cytochrome c, class II Daro_3016 3259939 - 3261579 + | FAD dependent oxidoreductase TERM 2958 3262433 - 3262421 - g 75 -7.7 -4.19238 | overlap 3262423 3262424 GCTGCAATCCGAAAA GATGG CTG CCATC GGCCAACTGGCCGCC Daro_3017 3261606 - 3263180 + | sensor histidine kinase TERM 2959 3263187 - 3263169 - T 75 -11.7 -2.83822 | overlap 3263166 3263178 3263181 CCGACGGCAGAACTA GCGCCGA AATAA TCGGCGC CTCACCCCGATCAAG Daro_3018 3264445 - 3263231 - | hypothetical protein TERM 2960 3263645 - 3263668 + g 89 -11 -4.18702 | opp_overlap 3263648 3263650, overlap 3263648 TGTATCGAGACCAGG CAACAGGTCG ATCT CGACCGGTTG TTTCTTGCCACTTCT TERM 2961 3263648 - 3263665 + g 71 -6.9 -4.20768 | opp_overlap 3263648 3263650, overlap 3263645 ATCGAGACCAGGCAA CAGGTCG ATCT CGACCGG TTGTTTCTTGCCACT Daro_3019 3264817 - 3265353 + | phasin TERM 2962 3265377 - 3265395 + T 100 -13.1 -5.24129 | opp_overlap 3265354 3265377 TGCCTGCGCAAAAAA GCCCGCG TTGAC CGCGGGC TTTTTTGTGGGCAAG TERM 2963 3265395 - 3265377 - T 100 -13.1 -5.00616 | opp_overlap 3265377, overlap 3265354 TGCCTGCGCAAAAAA GCCCGCG TTGAC CGCGGGC TTTTTTGTGGGCAAG Daro_3020 3266396 - 3265449 - | hypothetical protein Daro_3021 3267863 - 3266400 - | hypothetical protein TERM 2964 3267987 - 3267966 - R 100 -13.7 -5.63517 | opp_overlap 3267966 GGTGCAAATAAAAAA CCCGCCGGA TCGC TCCGACGGG TTTCTGGTACAGCCA TERM 2965 3267966 - 3267987 + r 90 -11.5 -3.96148 | opp_overlap 3267966 GGTGCAAATAAAAAA CCCGCCGGA TCGC TCCGACGGG TTTCTGGTACAGCCA Daro_3022 3269195 - 3268014 - | beta-ketothiolase Daro_3023 3270145 - 3269222 - | adenosylcobinamide-phosphate synthase TERM 2966 3270161 - 3270172 + r 75 -7.2 -4.31813 | GGGGTACCGATGCTT GCCG TATT CGGC TTATTTTGGTGTCTT Daro_3024 3270806 - 3270210 - | NUDIX hydrolase Daro_3025 3271060 - 3270803 - | hypothetical protein Daro_3026 3271721 - 3271071 - | hypothetical protein Daro_3027 3271729 - 3272442 + | glutamine amidotransferase class-I TERM 2967 3272461 - 3272489 + T 100 -17.6 -4.25104 | opp_overlap 3272461 3272466, overlap 3272466 TCGGCCTCAGTAAAA CAAAACGGGCAG CCTAA CTGCCCGTTTTG TTTTACTACCCCCCA TERM 2968 3272489 - 3272461 - T 100 -18.3 -4.25104 | opp_overlap 3272461 3272466, overlap 3272466 TCGGCCTCAGTAAAA CAAAACGGGCAGC CTA ACTGCCCGTTTTG TTTTACTACCCCCCA TERM 2969 3272466 - 3272484 + T 100 -11.7 -5.13722 | opp_overlap 3272461 3272466, overlap 3272461 CTCAGTAAAACAAAA CGGGCAG CCTAA CTGCCCG TTTTGTTTTACTACC TERM 2970 3272484 - 3272466 - T 100 -12.4 -5.13722 | opp_overlap 3272466 3272461, overlap 3272461 CTCAGTAAAACAAAA CGGGCAGC CTA ACTGCCCG TTTTGTTTTACTACC Daro_3028 3273002 - 3272508 - | nucleotide-binding protein Daro_3029 3273319 - 3273008 - | hypothetical protein Daro_3030 3273544 - 3273320 - | hypothetical protein TERM 2971 3273407 - 3273392 - G 74 -3.2 -4.77438 | overlap 3273394 AGCCAGCACGAAAAA GAGCAC GAAG GTACCC GTCTTGCCGGCTTTC Daro_3031 3274954 - 3273548 - | argininosuccinate synthase Daro_3032 3275907 - 3274987 - | ornithine carbamoyltransferase Daro_3033 3277082 - 3275910 - | acetylornithine aminotransferase TERM 2972 3277123 - 3277106 - H 100 -14.1 -4.73108 | CCCATAAAACGAAAA CGGCGGC CAAT GCCGCCG AAACGACCGCCACTC TERM 2973 3277264 - 3277229 - H 79 -9.8 -3.8448 | CAAGACAGGAGCAAA TCCACCACTACAGC CTCAACTC GCCGCAGTGATGGA AAGACAGGCGGCTTC TERM 2974 3277399 - 3277384 - g 71 -5.4 -4.30995 | overlap 3277394 3277395 GGCCTCACAAAACAA GGCAAA AAAT TTCGCC CGAGCGATTGGGCTG Daro_3034 3277333 - 3277629 + | hypothetical protein TERM 2975 3277647 - 3277676 + T 73 -9.3 -3.5774 | opp_overlap 3277654, overlap 3277653 3277654 AGAAATCAACCGCAA TAAAAAAGGCGCC CGCA GGCGCCATTTTCA TTTGAGCAGTTAACT TERM 2976 3277653 - 3277670 + T 85 -8.3 -4.54727 | opp_overlap 3277654, overlap 3277647 3277654 CAACCGCAATAAAAA AGGCGCC CGCA GGCGCCA TTTTCATTTGAGCAG TERM 2977 3277654 - 3277669 + T 80 -11.8 -3.32354 | opp_overlap 3277654, overlap 3277653 3277647 AACCGCAATAAAAAA GGCGCC CGCA GGCGCC ATTTTCATTTGAGCA TERM 2978 3277669 - 3277654 - T 100 -11.8 -5.4756 | opp_overlap 3277654 3277653 3277647 AACCGCAATAAAAAA GGCGCC CGCA GGCGCC ATTTTCATTTGAGCA rpsT 3277964 - 3277695 - | 30S ribosomal protein S20 Daro_3036 3282713 - 3278079 - | putative Tfp pilus assembly protein tip-associated adhesin PilY1 Daro_3037 3283370 - 3282729 - | hypothetical protein Daro_3038 3284365 - 3283367 - | hypothetical protein Daro_3039 3284756 - 3284370 - | hypothetical protein Daro_3040 3285307 - 3284774 - | general secretion pathway protein H Daro_3041 3285717 - 3285301 - | general secretion pathway protein H TERM 2979 3285929 - 3285944 + H 75 -4.6 -4.7373 | opp_overlap 3285929 AAATTTCAGAGAAAA GCCGTC CACA GAGGGC TTTTTGATAACATCG TERM 2980 3285944 - 3285929 - H 70 -4.6 -4.55721 | opp_overlap 3285929 AAATTTCAGAGAAAA GCCGTC CACA GAGGGC TTTTTGATAACATCG TERM 2981 3286575 - 3286563 - g 71 -7.7 -4.0641 | GGCGAGTGATAGAAA TCACC TAC GGTGA CAAGGAGCCCCCCCA Daro_3042 3286064 - 3286624 + | hypothetical protein Daro_3043 3287546 - 3286626 - | 4-hydroxy-3-methylbut-2-enyl diphosphate reductase Daro_3044 3287977 - 3287546 - | peptidylprolyl isomerase, FKBP-type Daro_3045 3288456 - 3287977 - | signal peptidase II TERM 2982 3288087 - 3288068 - G 77 -11.4 -3.57144 | TCGGCGACGTTGAAA GCCGGCCA GTAG TAGCCGGC GGCATGCCATTGAAT TERM 2983 3288279 - 3288262 - G 70 -4.1 -4.67904 | gap 1 CAGCAACGCGAAAAA CCAGCGCT GCC AGC-CCGG CTGATCGGCCAGGAA ileS 3291247 - 3288449 - | isoleucyl-tRNA synthetase TERM 2984 3289937 - 3289955 + g 71 -6.6 -4.22475 | overlap 3289940 GGCAATCCAGCGCAG GGTCGAGG CAT CCTCGTTC TTCTTGTTTTCCATG TERM 2985 3289940 - 3289952 + g 79 -9.1 -4.20953 | overlap 3289937 AATCCAGCGCAGGGT CGAGG CAT CCTCG TTCTTCTTGTTTTCC Daro_3047 3292177 - 3291257 - | FMN adenylyltransferase / riboflavin kinase Daro_3048 3292338 - 3293378 + | diguanylate cyclase Daro_3049 3294982 - 3293633 - | cell wall hydrolase/autolysin Daro_3050 3295377 - 3294916 - | hypothetical protein TERM 2986 3295488 - 3295475 - g 84 -3.8 -5.28481 | CACTCAAGGAAAAAA TCCG CGAGGC CGGA AAAGAGCTTGGCTTT Daro_3051 3295426 - 3296490 + | 4Fe-4S cluster binding Daro_3052 3296565 - 3298136 + | GGDEF Daro_3053 3298687 - 3298265 - | hypothetical protein Daro_3054 3298938 - 3298690 - | hypothetical protein Daro_3055 3299920 - 3299081 - | rhodanese-like protein TERM 2987 3299858 - 3299833 - G 73 -10.5 -3.60098 | gap 1, overlap 3299845 AGCCGGTATCGGAAA GCTGGTGA-CGA ACG TCGACCACCAGC CAATTAGGGTCGTCG Daro_3056 3300268 - 3299927 - | hypothetical protein Daro_3057 3301222 - 3300371 - | hypothetical protein TERM 2988 3301277 - 3301240 - R 90 -7.6 -4.74103 | opp_overlap 3301246, overlap 3301246 GGGGGAACTCAAAAA GACAAAGGGCGCCGGA TTTTAC CCCGACGCCCTCTTGC AGTGCGGTAAAGGCT TERM 2989 3301271 - 3301246 - R 100 -11.8 -4.56791 | opp_overlap 3301246, overlap 3301240 ACTCAAAAAGACAAA GGGCGCCGGA TTTTAC CCCGACGCCC TCTTGCAGTGCGGTA Daro_3058 3302473 - 3301292 - | Rieske (2Fe-2S) region TERM 2990 3302466 - 3302450 - G 76 -6.5 -4.57569 | CCAGCGGGTTAAAAA GCAGGAT TTT ACCCCGC CGCGCATTTGACCTG Daro_3059 3302530 - 3302769 + | exodeoxyribonuclease VII small subunit Daro_3060 3302766 - 3303659 + | farnesyl-diphosphate synthase TERM 2991 3304166 - 3304144 - g 80 -11.3 -3.7282 | CGAGGCCATGAACAA TGCCGGCGT TGCCG ACGCCGACA TGCTGGTCATCCTGA TERM 2992 3305125 - 3305176 + G 76 -13.9 -3.08471 | gap 3, opp_overlap 3305110, overlap 3305143 GCTCGATACCCTGCC GGTCGGCAAGGGCGATATCC--GCCG CCG CGGCAAGGATATCGCCCT-GCTCGCC TTCGGTAGCCTTGTC TERM 2993 3305452 - 3305438 - g 77 -11.4 -3.63991 | GACCACGGCGAACAA GGCCAG TTG CTGGCC GAACTTGGCCTCGAC Daro_3061 3303659 - 3305515 + | 1-deoxy-D-xylulose-5-phosphate synthase Daro_3062 3305534 - 3306346 + | GTP cyclohydrolase TERM 2994 3306396 - 3306369 - T 100 -12.8 -4.35017 | opp_overlap 3306375, overlap 3306375 CAAAAACCGAACAAA GAAAAAGGGCGC CAAG GCGCCCTTTTTT CAATCCGGAGAAATC TERM 2995 3306375 - 3306390 + T 100 -11.8 -5.08824 | opp_overlap 3306369 3306375 CCGAACAAAGAAAAA GGGCGC CAAG GCGCCC TTTTTTCAATCCGGA TERM 2996 3306390 - 3306375 - T 100 -11.8 -5.47159 | opp_overlap 3306375, overlap 3306369 CCGAACAAAGAAAAA GGGCGC CAAG GCGCCC TTTTTTCAATCCGGA rplS 3306794 - 3306414 - | 50S ribosomal protein L19 TERM 2997 3306745 - 3306760 + g 84 -9 -4.57882 | AATTCAGGAATGGTC TTGCCC AGAC GGGCAA TTTCTTCTTGTTCCA Daro_3064 3307585 - 3306821 - | tRNA (Guanine37-N1) methyltransferase Daro_3065 3308094 - 3307582 - | 16S rRNA processing protein RimM Daro_3066 3308358 - 3308104 - | SSU ribosomal protein S16P TERM 2998 3308436 - 3308419 - H 74 -3.4 -4.90266 | TTTATCAAGGAAAAA CAAGCC ACTTAG GACTTG GAAATAGCACCGGAT Daro_3067 3308523 - 3310037 + | hypothetical protein Daro_3068 3310836 - 3310009 - | ribonuclease BN Daro_3069 3310864 - 3311460 + | flavodoxin-like protein Daro_3070 3311457 - 3311825 + | transmembrane protein TERM 2999 3311831 - 3311808 - T 86 -3.8 -5.38549 | gap 1, opp_overlap 3311808 CCCAAAGAAGAAAAA GCTGCC-CAGT CAA ACTGAAGCGGC TTCTCTGCGAACCTG Daro_3071 3313394 - 3311853 - | 2-isopropylmalate synthase Daro_3072 3314163 - 3313411 - | CDP-diacylglycerol--serine O-phosphatidyltransferase TERM 3000 3314255 - 3314230 - R 100 -18.3 -4.16305 | AGCCACAAACAACAA GGGCGGTGCAG TCTC CCGCACCGCCC GAAGCGAAGATAGCG TERM 3001 3314294 - 3314264 - R 77 -11.9 -3.17194 | ACCGCCCGAAGCGAA GATAGCGTCAGCC ATTGA AGCAGACGCTATC GAGCCGCGACCAAAT Daro_3073 3315325 - 3314309 - | ketol-acid reductoisomerase Daro_3074 3315841 - 3315350 - | acetolactate synthase 3 regulatory subunit Daro_3075 3317560 - 3315860 - | acetolactate synthase, large subunit TERM 3002 3316885 - 3316895 + g 74 -6.8 -4.37886 | TCAGCTTGCGCGCCA GCTG GGT CAGC TTTTCTGCGGCATCC TERM 3003 3317411 - 3317385 - G 73 -5.1 -4.67904 | gap 1, opp_overlap 3317409, overlap 3317387 GAGGAACGCGAAAAA GC-GTCTGCTGC GTGG ACAGCAGCCTGC TCGTGGCGAACGAGA TERM 3004 3318088 - 3318074 - g 100 -4.2 -5.99154 | GATGAAATAAAAAAA TTGCCG GCG CGTCAA CGAGAAGCCTTCCTC Daro_3076 3317663 - 3318241 + | RNA polymerase factor sigma-70 Daro_3077 3318238 - 3318621 + | transmembrane protein TERM 3005 3319050 - 3319032 - gf 90 -10.2 -4.31379 | overlap 3319034 AGCAAGTCATCAAAA CTGCTGGC CCA GCCAGCGG CAGTCCCGCCCGCCA TERM 3006 3319048 - 3319034 - gf 72 -11.4 -2.50381 | overlap 3319032 CAAGTCATCAAAACT GCTGGC CCA GCCAGC GGCAGTCCCGCCCGC Daro_3078 3318591 - 3319154 + | hypothetical protein Daro_3079 3319154 - 3319567 + | RDD Daro_3080 3320656 - 3319568 - | permease YjgP/YjgQ Daro_3081 3321735 - 3320653 - | permease YjgP/YjgQ TERM 3007 3321856 - 3321843 - g 70 -3.1 -4.58395 | gap 1, opp_overlap 3321843 3321846, overlap 3321846 GGTAGCCCGGAAAAA CA-GCG TAG CGCCTG CGTCGTTGTGGGTGT TERM 3008 3322123 - 3322134 + G 78 -4.4 -4.82901 | overlap 3322116 ACGAAACCGGCGCCT TCGA TGCC TCGA TTTTTCTGACGGAAC TERM 3009 3322603 - 3322587 - g 70 -3.6 -4.67755 | AGAGCCAGTGAAAAA CCCATC GTATT GGTGGG CAAGGGCGTCACTTT Daro_3082 3321807 - 3323303 + | PepA aminopeptidase Daro_3083 3323300 - 3323722 + | DNA polymerase III chi subunit, HolC Daro_3084 3323732 - 3324133 + | hypothetical protein valS 3324199 - 3327030 + | valyl-tRNA synthetase TERM 3010 3327024 - 3327007 - f 73 -9.1 -3.6268 | overlap 3327001 CAACTTAAACCACAA CTGGCCA AGCT CGGCCAG GCATAGAGAGACATA TERM 3011 3327173 - 3327155 - g 91 -5.2 -5.46706 | opp_overlap 3327155, overlap 3327157 ATGGGAAAAGAAAAA TCCGGTCT GGA AGCCCGAA TTCCGTCTCGTCGCC Daro_3086 3327039 - 3327518 + | hypothetical protein TERM 3012 3327624 - 3327582 - T 87 -14.2 -3.05935 | overlap 3327584 ACATTGCGGATGCAA CATTCTGACGCCTGAAAATC CCC GATTTTCAGGCGTCGGTCCG TAGGGATACCCAAAT TERM 3013 3327622 - 3327584 - T 83 -13.2 -3.08798 | overlap 3327582 ATTGCGGATGCAACA TTCTGACGCCTGAAAATC CCC GATTTTCAGGCGTCGGTC CGTAGGGATACCCAA Daro_3087 3329277 - 3327610 - | Para-aminobenzoate synthase, component I TERM 3014 3329356 - 3329385 + r 83 -6.5 -4.89562 | gap 1, overlap 3329358 CAGTTCGGTGCTTAT TTGCG-CTTCAAGT AAT ACTCGAAGACGCGA TTTTCTTCCTTTTGC Daro_3088 3329579 - 3329352 - | SirA-like Daro_3089 3331069 - 3329618 - | peptidase M48, Ste24p TERM 3015 3331109 - 3331098 - H 77 -7.2 -4.58395 | overlap 3331100 CGCAGCCTCGAAAAA CGCC ATCC GGCG GATCGTAACCAATCG TERM 3016 3331546 - 3331532 - g 71 -7 -4.17657 | TACGATATGGCAAAA GCCGTG GAT CGCGGC ATGCGTATCGAAAAC moaC 3331133 - 3331615 + | molybdenum cofactor biosynthesis protein C Daro_3091 3331631 - 3332104 + | hypothetical protein Daro_3092 3332107 - 3332418 + | sulfur compound chelating protein SoxZ TERM 3017 3332439 - 3332474 + T 100 -10.4 -4.86001 | opp_overlap 3332446, overlap 3332446 TCTGGCACTCCAAAT AAAAAAAGCCCGCCTG AACC CAGGCGGGCTTTGATA TTTTTATCCGGTGCT TERM 3018 3332467 - 3332446 - T 100 -17.3 -5.95539 | opp_overlap 3332439 3332446 CTCCAAATAAAAAAA GCCCGCCTG AACC CAGGCGGGC TTTGATATTTTTATC TERM 3019 3332446 - 3332467 + T 100 -17.3 -4.16158 | opp_overlap 3332446, overlap 3332439 CTCCAAATAAAAAAA GCCCGCCTG AACC CAGGCGGGC TTTGATATTTTTATC Daro_3093 3332707 - 3332489 - | cold-shock DNA-binding protein family protein TERM 3020 3333089 - 3333100 + G 100 -2.2 -6.02914 | GGATTTCGTCATTAC CGTT CTGC AGCG TTTTTTTTCTCTGGA Daro_3094 3332967 - 3333275 + | ATP-dependent Clp protease adaptor protein ClpS TERM 3021 3333772 - 3333761 - g 78 -7.2 -4.67234 | ACTGAAGGTGAAAAA GCCG AAGC CGGC CCGCTCGACCAATAC Daro_3095 3333275 - 3335536 + | AAA ATPase, central region:Clp, N terminal TERM 3022 3335535 - 3335520 - f 91 -3.2 -5.5112 | TCGAGGAAGAAAAAA CAGAAG CCGT CGTCTG AATGATTGCCATTCC TERM 3023 3335559 - 3335578 + F 100 -13.6 -5.63517 | opp_overlap 3335559 CCATTCCCCCTAAAA GCCGTGCA ACAT TGCACGGC TTTTTTATTTCGAGG TERM 3024 3335578 - 3335559 - f 100 -13.6 -4.08216 | opp_overlap 3335559 CCATTCCCCCTAAAA GCCGTGCA ACAT TGCACGGC TTTTTTATTTCGAGG Daro_3096 3335602 - 3336093 + | ribonuclease activity regulator protein RraA TERM 3025 3336123 - 3336098 - T 100 -11.9 -5.08824 | opp_overlap 3336103, overlap 3336103 CGCTGACCTAAAAAA CAAAACCGGGG AATT CCCCGGTTTTT TCGTTGTAGCGATTA TERM 3026 3336118 - 3336103 - T 100 -11.8 -5.43553 | opp_overlap 3336103, overlap 3336098 ACCTAAAAAACAAAA CCGGGG AATT CCCCGG TTTTTTCGTTGTAGC TERM 3027 3336103 - 3336118 + T 100 -11.8 -5.32944 | opp_overlap 3336098 3336103 ACCTAAAAAACAAAA CCGGGG AATT CCCCGG TTTTTTCGTTGTAGC Daro_3097 3337944 - 3336136 - | methyl-accepting chemotaxis sensory transducer TERM 3028 3337416 - 3337430 + g 71 -7.1 -4.17048 | GACCTGCACGCTCCG CCGTC GACGA GACGG TTCTTTTCACCACGA Daro_3098 3338260 - 3339558 + | isocitrate lyase TERM 3029 3339627 - 3339603 - f 87 -14.3 -3.09516 | opp_overlap 3339603 CCCGGCAGCAGCGAA GGCCGGCAC TCACAAG GTGCCGGCC TTTTTATTTGCCACC TERM 3030 3339603 - 3339627 + F 100 -15 -5.27335 | opp_overlap 3339603 CCCGGCAGCAGCGAA GGCCGGCACT CACAA GGTGCCGGCC TTTTTATTTGCCACC TERM 3031 3342417 - 3342429 + G 70 -4.8 -4.44245 | TCAGCGCCTTGCAGT TCCG TAACC CGGA TTTTGTCGATGATGT Daro_3099 3339779 - 3342895 + | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) Daro_3100 3343779 - 3342877 - | LysR family transcriptional regulator TERM 3032 3343094 - 3343067 - G 70 -9.8 -3.44325 | gap 1, overlap 3343063 ACCTCCCACAATGAA CGCCAGGCCAGGC CGC GCCCGGCC-AACG CCCATTCATGCAGGA Daro_3101 3343893 - 3345491 + | malate synthase TERM 3033 3345540 - 3345521 - f 86 -10.6 -3.95456 | opp_overlap 3345522, overlap 3345522 AAAGGCAACACGAAA GCGCCGGG ACAT CCCGGCGT TTTTTATTGGCATCG TERM 3034 3345539 - 3345522 - f 86 -14.1 -2.96189 | opp_overlap 3345522, overlap 3345521 AAGGCAACACGAAAG CGCCGGG ACAT CCCGGCG TTTTTTATTGGCATC TERM 3035 3345522 - 3345539 + F 100 -14.1 -5.46657 | opp_overlap 3345522 3345521 AAGGCAACACGAAAG CGCCGGG ACAT CCCGGCG TTTTTTATTGGCATC Daro_3102 3345610 - 3346338 + | hypothetical protein TERM 3036 3346385 - 3346406 + T 87 -13.7 -3.11634 | CGCTGAAAGTGCATG GTGGCTGCC TCGG GGCAGCCGC TTCAGTGGTGTAAAC Daro_3103 3346641 - 3346408 - | hypothetical protein TERM 3037 3346778 - 3346799 + G 76 -10.1 -3.83324 | gap 1 GACATCATCCTCAAG GC-CGGCCGC TCG GCGGTCGAGC TTTCACTGTTTGTGC Daro_3104 3346748 - 3347686 + | hypothetical protein Daro_3105 3347794 - 3348153 + | LrgA Daro_3106 3348150 - 3348869 + | LrgB-like protein Daro_3107 3348962 - 3351361 + | PAS/PAC sensor signal transduction histidine kinase TERM 3038 3351585 - 3351563 - g 71 -5.4 -4.39287 | GGAATTACAGGAAAA GCTGGACGCC CTT GGCTCGCAGC TCCCGGTCATCTTCG Daro_3108 3351354 - 3351962 + | LuxR response regulator receiver TERM 3039 3351989 - 3351970 - T 100 -16.4 -3.78409 | TGAATTGAATCCAAA GCCGCGCC GGCC GGCGCGGC TCAGATCGGGATGAT Daro_3109 3352322 - 3351990 - | hypothetical protein Daro_3110 3353437 - 3352403 - | ankyrin TERM 3040 3353501 - 3353530 + G 75 -8.6 -4.19974 | gap 1 CGATTACCGGCTTTT TGCGGCGCTGGCG CTGTC CGTCA-CGCTGCA TTTGTTGCCACTTTT Daro_3111 3353475 - 3353999 + | TonB, C-terminal Daro_3112 3354075 - 3355700 + | chemotaxis sensory transducer TERM 3041 3355707 - 3355747 + T 76 -12.5 -2.52896 | opp_overlap 3355706, overlap 3355712 AAGACCTGAAACCAG GGGCGGCCGGCGAGG CAACATTCAGA CCGCGCCGGCTGCTC TCAATTCGGCAATCC Daro_3113 3356927 - 3355728 - | L-carnitine dehydratase/bile acid-inducible protein F Daro_3114 3357738 - 3356929 - | glutamate racemase Daro_3115 3358012 - 3357758 - | hypothetical protein TERM 3042 3358075 - 3358065 - R 100 -4.6 -6.15259 | opp_overlap 3358067, overlap 3358067 TAACGCAAAAAAAAA CCGC CTT GCGA TGGCTCGTTGGGCCC Daro_3116 3358682 - 3358188 - | tRNA/rRNA methyltransferase (SpoU) Daro_3117 3359194 - 3358691 - | hypothetical protein Daro_3118 3359817 - 3359245 - | hypothetical protein TERM 3043 3359695 - 3359679 - G 71 -6.5 -4.21462 | opp_overlap 3359679, overlap 3359682 AGGCATCACGGAAAA CATGGAC CAT GTCCTTG CCATGCCCTTCCTTG TERM 3044 3359943 - 3359914 - R 100 -12.1 -5.00616 | opp_overlap 3359921, overlap 3359918 TGCGTGCCCAAAAAA GACAGAAGCCCCC AGGC GGGGGCTTCATTC AGGTGAAATCTCCCG TERM 3045 3359939 - 3359918 - R 100 -15.9 -3.66166 | opp_overlap 3359921, overlap 3359914 TGCCCAAAAAAGACA GAAGCCCCC AGGC GGGGGCTTC ATTCAGGTGAAATCT TERM 3046 3359921 - 3359936 + r 80 -11.8 -3.35813 | opp_overlap 3359918 3359914 CCAAAAAAGACAGAA GCCCCC AGGC GGGGGC TTCATTCAGGTGAAA Daro_3119 3361206 - 3359965 - | isocitrate dehydrogenase (NADP) TERM 3047 3360641 - 3360653 + g 85 -9.1 -4.63218 | opp_overlap 3360632 CCAATACCGGAAGTC TCCGG AAA CCGGA TTTTCTTGACGCCCA TERM 3048 3361016 - 3361028 + g 77 -4.1 -4.89477 | TCGCCGGCATAGACT TCCAT CCA GTGGA TTTTCTTCTTGCCGC TERM 3049 3361279 - 3361299 + r 71 -2.5 -4.93365 | opp_overlap 3361269, overlap 3361267 GAACACCTGGCCCGA TGCTTCC TTGGGCC GGCAGCA TTTTTGATTATGCGG TERM 3050 3361393 - 3361360 - R 100 -26.1 -4.87133 | ACCCGCCAAAGAAAA CGGCCCGGCAAACCC CTCG GGGTCTGCCGGGCCG CAAGTCTCAGCCGGA Daro_3120 3363648 - 3361411 - | isocitrate dehydrogenase NADP-dependent, monomeric type TERM 3051 3363680 - 3363702 + H 72 -7.6 -3.8709 | TGGATTGAATTTTTG GAGCTGAGGG TCA CGCTCAGCCC TTTGTGAACCGGTTT aceK 3363865 - 3365646 + | bifunctional isocitrate dehydrogenase kinase/phosphatase protein TERM 3052 3365761 - 3365738 - f 81 -10.4 -3.98627 | gap 1, overlap 3365741 GCATTAATACAACAA TGACCGATACC CAG GGTATCGG-CA CCAATACGCCAAATA TERM 3053 3365759 - 3365741 - f 83 -13.2 -3.03429 | overlap 3365738 TTAATACAACAATGA CCGATACC CAG GGTATCGG CACCAATACGCCAAA Daro_3122 3365806 - 3366948 + | alanine dehydrogenase/PNT Daro_3123 3366948 - 3367229 + | pyridine nucleotide transhydrogenase subunit alpha Daro_3124 3367229 - 3368599 + | NAD(P) transhydrogenase, beta subunit Daro_3125 3368673 - 3369896 + | chemotaxis sensory transducer Daro_3126 3369933 - 3371018 + | YeeE/YedE TERM 3054 3371080 - 3371039 - T 95 -15.2 -3.05046 | gap 1, opp_overlap 3371036 3371039, overlap 3371046 GGATTGGCCCAAAAG GGAAAAAGCCCGCCAGCAG AACAA CTGC-GGCGGGCCTTCACC TGAATTTGTGCCTTA TERM 3055 3371039 - 3371080 + T 70 -10.8 -2.7204 | gap 1, opp_overlap 3371039 3371046, overlap 3371036 GGATTGGCCCAAAAG GGAAAAAGCCCGCCAGCAG AACAA CTGC-GGCGGGCCTTCACC TGAATTTGTGCCTTA TERM 3056 3371073 - 3371046 - T 100 -14.9 -4.87318 | gap 1, opp_overlap 3371039 3371036, overlap 3371039 CCCAAAAGGGAAAAA GCCCGCCAGCAG AACAA CTGC-GGCGGGC CTTCACCTGAATTTG Daro_3127 3371716 - 3371093 - | hypothetical protein Daro_3128 3373434 - 3371713 - | sulfate thiol esterase SoxB TERM 3057 3373501 - 3373476 - R 100 -10.3 -5.15969 | overlap 3373477 GGCGAAGCCAAAAAA TGCCCGACCAG TTTC CCGGCCGGGCT AATCACGCAAGTTCT TERM 3058 3373500 - 3373477 - R 100 -13.8 -3.68859 | overlap 3373476 GCGAAGCCAAAAAAT GCCCGACCAG TTTC CCGGCCGGGC TAATCACGCAAGTTC Daro_3129 3374162 - 3373515 - | hypothetical protein Daro_3130 3374992 - 3374177 - | hypothetical protein TERM 3059 3374759 - 3374813 + g 95 -13.3 -4.07568 | AGCGCCTTCCAGCTT GCCCGGCCCGAGGCCGAGGTCGCAC TGTTC GAGCGACACCTGCTTCGGCCCGCGC TTTTCGGACCACAAG Daro_3131 3375382 - 3375071 - | sulfur compound chelating protein SoxZ Daro_3132 3375999 - 3375532 - | hypothetical protein Daro_3133 3377071 - 3376025 - | cytochrome c, class I TERM 3060 3377047 - 3377013 - G 75 -2.8 -4.98531 | gap 1 TTTTCAAAGGAAAAA CCGGTGCTCGACGCC CCCAGT AGCGCC-AGGACCAG AATCGTTTTAGAGAA Daro_3134 3378401 - 3377055 - | oxidoreductase molybdopterin binding subunit TERM 3061 3378325 - 3378304 - G 81 -4.3 -5.00616 | gap 1, overlap 3378305 CTCTTGCGCAAAAAA TCG-CGACGC CCG GCGCCGACGG CCTTGACCTGATCTT Daro_3135 3378762 - 3378442 - | ArsR family transcriptional regulator Daro_3136 3378951 - 3379256 + | cytochrome c, class I Daro_3137 3379268 - 3380545 + | sulfide dehydrogenase (flavocytochrome), flavoprotein subunit TERM 3062 3380562 - 3380593 + T 100 -21.8 -3.6608 | opp_overlap 3380562 3380570, overlap 3380570 TTTTATCTGCAGCAA TGACAAAAGGCCGC ATTT GCGGCCTTTTGTCA TTTCAATGAGCTCAT TERM 3063 3380593 - 3380562 - T 100 -21.8 -3.15544 | opp_overlap 3380562 3380570, overlap 3380570 TTTTATCTGCAGCAA TGACAAAAGGCCGC ATTT GCGGCCTTTTGTCA TTTCAATGAGCTCAT TERM 3064 3380570 - 3380585 + T 100 -11.8 -4.62168 | opp_overlap 3380562 3380570, overlap 3380562 GCAGCAATGACAAAA GGCCGC ATTT GCGGCC TTTTGTCATTTCAAT TERM 3065 3380585 - 3380570 - T 100 -11.8 -4.56607 | opp_overlap 3380570 3380562, overlap 3380562 GCAGCAATGACAAAA GGCCGC ATTT GCGGCC TTTTGTCATTTCAAT Daro_3138 3381229 - 3380612 - | cytochrome c, class I TERM 3066 3381240 - 3381266 + r 74 -3.3 -4.90381 | gap 1, overlap 3381243 AACATCACCACCCCC TT-ATATTTGAT AATA ATCAAATATTAA TTTTCTTCTATTCGA Daro_3139 3381896 - 3381294 - | di-heme cytochrome c, class IC TERM 3067 3381495 - 3381528 + g 72 -10.9 -3.40299 | gap 1 GCCGTGGCACTCGCG GCAGGGCGTCAGCCCC TTG GCGGC-GTTGCCCTGC TTGTAGATCTGCTCG TERM 3068 3381877 - 3381863 - G 76 -5.6 -4.62069 | overlap 3381864 CGGCCACCGCAAAAA GTGCCG CGG CGGCAA CGACAAAACGTCGAA dut 3382342 - 3381893 - | deoxyuridine 5'-triphosphate nucleotidohydrolase Daro_3141 3383532 - 3382342 - | bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase TERM 3069 3383268 - 3383255 - G 70 -3.7 -4.65078 | overlap 3383256 3383257 ATACGGGCAAGAAAA TCGGC CGAA GCCGG CGCAACCAGAATCAA Daro_3142 3383580 - 3384260 + | DNA repair protein RadC rpmB 3384342 - 3384575 + | 50S ribosomal protein L28 rpmG 3384594 - 3384761 + | 50S ribosomal protein L33 TERM 3070 3384788 - 3384803 + T 100 -11.8 -5.42198 | opp_overlap 3384788 CCAGCATTCGACAAA CCCGCC TTCT GGCGGG TTTTGTTTTTTCAGG TERM 3071 3384803 - 3384788 - T 90 -11.8 -3.90318 | opp_overlap 3384788 CCAGCATTCGACAAA CCCGCC TTCT GGCGGG TTTTGTTTTTTCAGG Daro_3145 3385311 - 3384814 - | disulphide bond formation protein DsbB Daro_3146 3385439 - 3386143 + | response regulator receiver:transcriptional regulatory protein, C-terminal Daro_3147 3386130 - 3387566 + | sensor histidine kinase Daro_3148 3387822 - 3388001 + | hypothetical protein TERM 3072 3388050 - 3388072 + T 100 -10.5 -5.24129 | overlap 3388052 TCGAGACCTCCCTGT TACCCCGCC CTCGT GGCGGGGTC TTTTTTGTCCGGCCG TERM 3073 3388052 - 3388070 + T 100 -13.1 -4.25873 | overlap 3388050 GAGACCTCCCTGTTA CCCCGCC CTCGT GGCGGGG TCTTTTTTGTCCGGC Daro_3149 3388385 - 3388107 - | hypothetical protein TERM 3074 3388472 - 3388462 - R 100 -3.2 -5.75945 | ACCGTGGAAAAAAAA GACC AGC AGTC AAAGCCGTTCTCACC TERM 3075 3388597 - 3388561 - R 71 -9.3 -3.53012 | opp_overlap 3388591, overlap 3388579 GGCTGCCTCGCCAAA CCAGTTGGCGCCGAG ACAGGCG CGCAGCGCCAGCCGG GCACGGTGCAACTGA Daro_3150 3389145 - 3388543 - | RNA polymerase sigma factor Daro_3151 3389189 - 3389410 + | hypothetical protein TERM 3076 3389693 - 3389681 - g 81 -5.5 -4.82901 | TGGCGCCGACAAAAA GAAGG ATG CCTCC TGTGGCGCAGCCAAG TERM 3077 3389765 - 3389748 - g 93 -6.2 -5.55769 | GCGGACAAGAAAAAA GACGCC TCCTGC GGCGCC AACAAATAAGGCTGC Daro_3152 3389442 - 3389774 + | hypothetical protein TERM 3078 3389792 - 3389816 + F 100 -13.6 -4.4767 | gap 1 CTGCGCTGATCGGCT GCGGCGCAGGG TTCG CCCTGC-CCGC TTTTCTGCTCAATGG TERM 3079 3390220 - 3390197 - g 78 -7.4 -4.67353 | CCACTGACGGAAAAA GCGGTCGA ATGGACGG CCGACCGC ATCAAGCGGGCTCAG Daro_3153 3389843 - 3390685 + | hypothetical protein Daro_3154 3390685 - 3391425 + | hypothetical protein TERM 3080 3391820 - 3391808 - g 76 -9.1 -4.07568 | GGGTGCTGTCGAAAA GGCCA GGC TGGCC GGCGAGACCGATCCC Daro_3155 3391500 - 3391871 + | hypothetical protein Daro_3156 3391888 - 3392616 + | cytochrome c biogenesis protein, transmembrane region Daro_3157 3394773 - 3392629 - | TonB-dependent receptor TERM 3081 3393158 - 3393176 + g 71 -7.4 -4.1523 | GCATTCATCCGCAGA CCTCCG AACGGAG CGGAGG TTTCTCTGTCATCAG Daro_3158 3396174 - 3394912 - | MscS mechanosensitive ion channel Daro_3159 3397433 - 3396171 - | Fmu (Sun)/ nucleolar NOL1/Nop2p TERM 3082 3396412 - 3396428 + g 73 -8.7 -3.92542 | ACCAGCTTGGCTGCC GCTTCGA GAA TCGAGGC TTGTTTGACCGTCAG Daro_3160 3398404 - 3397430 - | hypothetical protein TERM 3083 3398154 - 3398197 + g 89 -13 -4.11773 | overlap 3398132 3398155 GGCGCTACCGGCGTA TCGGCCACGTCCTTGCTGCT GGTC AGCGGCCCGGGCCTGGCCGG TTTTGGACGATGTTT TERM 3084 3398155 - 3398196 + g 80 -14.3 -3.06341 | overlap 3398132 3398154 GCGCTACCGGCGTAT CGGCCACGTCCTTGCTGCT GGTC AGCGGCCCGGGCCTGGCCG GTTTTGGACGATGTT Daro_3161 3399058 - 3398411 - | phosphoribosylglycinamide formyltransferase TERM 3085 3398878 - 3398859 - G 74 -6.4 -4.30844 | gap 1, opp_overlap 3398859 3398858, overlap 3398815 3398814 AGCGCAGCATCAAAA GCCTCGCGC CCG GCG-AAGGC CTTATGGTTGATGAA Daro_3162 3399762 - 3399055 - | putative lipoprotein TERM 3086 3399504 - 3399547 + g 72 -2.3 -4.77896 | gap 3, opp_overlap 3399496, overlap 3399529 TACGGAACTGGCGCT GACGCAGGCGTTCGACCGCCGC CTC GCGGCTGGCTG-CGCC-GC-TC TTTTTCCATTCCTTG Daro_3163 3400403 - 3399762 - | hypothetical protein TERM 3087 3401832 - 3401806 - g 74 -3.6 -4.7254 | overlap 3401808 ATCCTCTACGAAAAA CTGAAGACTGCC TTC GACAACCGCCAG ATCGCCACCCAGGCG Daro_3164 3400423 - 3402270 + | DNA mismatch repair protein MutL TERM 3088 3402423 - 3402440 + G 81 -8.5 -4.63218 | GGTTTTCCAGCGCGC TGCTCAA GGCG TTGAGCA TTTTCTTGAGCAAAG Daro_3165 3402350 - 3402934 + | hypothetical protein TERM 3089 3403206 - 3403177 - g 71 -8.5 -4.07568 | CCCGCCTGGCCAAAA CCGCTGCGCCC GAGGCCGT GAGCGCACCGG CCAGTTCGGCCAAAG Daro_3166 3403017 - 3403841 + | hypothetical protein Daro_3167 3405422 - 3403842 - | hypothetical protein TERM 3090 3405982 - 3405956 - g 88 -13.6 -3.68073 | opp_overlap 3405962 CAGCGCATCGAAGAA GACCCGGCCGGC CTT GCCGGTCGCGTC GAGAAGGTCAGCTCT Daro_3168 3405485 - 3406336 + | hypothetical protein TERM 3091 3406492 - 3406508 + G 78 -10.8 -3.86015 | CCGGCATCCTGATCG GCCCGG CCACC CCGGGC TTTGTCGCCGACCTG TERM 3092 3407118 - 3407128 + G 77 -8.2 -4.41348 | TTCAGCGTTTCCTTC GCGC TTG GCGC TTTCTTTGCCGGCAC TERM 3093 3407762 - 3407735 - g 77 -12 -3.65812 | gap 1, overlap 3407753 CGTTGTCGAACAGAA CCGTGAGCAGGTC GAA GACCTGCGC-CGG CAGGGGATCGCGGCA TERM 3094 3407773 - 3407805 + G 76 -9.8 -3.78934 | gap 1 GCCGGCAGGGGATCG CGGCAGTCTCGGGCA ATGC TGCC-GAGCCGGCCG TTCTTATCCAGGCGC Daro_3169 3406362 - 3408065 + | TrkA-N:Sodium/hydrogen exchanger Daro_3170 3408089 - 3408973 + | hypothetical protein TERM 3095 3409598 - 3409575 - g 72 -2.4 -4.81249 | gap 1, opp_overlap 3409588 GCCGAAAGCGAAAAA CAGAAG-CCGC CCT ACGATCTCCTG CAGATCGGTCTGCTG Daro_3171 3409011 - 3409955 + | tRNA isopentenyltransferase Daro_3172 3411069 - 3409945 - | response regulator receiver TERM 3096 3410434 - 3410412 - G 74 -4.1 -4.74504 | gap 1, opp_overlap 3410414, overlap 3410414 ATTTGAATTGAAAAA TC-CGCCCGC TTTC ACGGACGTGA TTAAGCACCGAAACT TERM 3097 3411241 - 3411217 - R 73 -3.5 -4.74103 | GCCTCAAGCGAAAAA TCCTAGCCG TCGCTTC CGGGCAGGA ATTCCGGCAACTTTG Daro_3173 3411863 - 3411219 - | rare lipoprotein A TERM 3098 3411692 - 3411714 + gr 73 -9 -3.65522 | ATGCCGGTGAGGCCG GGCGCACCAC GCG GTGGGCCGCC TTCTTCGCATGCCTG TERM 3099 3411737 - 3411749 + gr 70 -4.7 -4.44667 | overlap 3411735 3411738 CATGCCTGGCGATGG CCGGC TTG GCCGA TTTCTTCTTGCCCGC TERM 3100 3411824 - 3411798 - GR 91 -12.3 -3.73647 | gap 1, opp_overlap 3411790, overlap 3411812 GGCATTCAGCAACAA CAGGCCGCAGGC AATT GCC-GCGACCTG CCGCTGCCATTTAGA Daro_3174 3412878 - 3411835 - | phosphoribosylformylglycinamidine cyclo-ligase TERM 3101 3412343 - 3412380 + gH 74 -5.5 -4.56597 | gap 1, opp_overlap 3412357, overlap 3412344 3412348 CCGAGCACGACATCG CCCGGGGTAATCGA-GGC CTT GCCGTCGATGGCCTTGGA TTTTTCAACGACACC TERM 3102 3412407 - 3412357 - GH 84 -14 -2.52464 | opp_overlap 3412348 3412344 3412343, overlap 3412394 3412406 GCCCGGGGTAATCGA GGCCTTGCCGTCGATGGCCTTGGA TTT TTCAACGACACCGACCGCAAAGCC GGCCAGATCGTATTC TERM 3103 3412427 - 3412444 + gH 70 -10.5 -2.75294 | opp_overlap 3412406, overlap 3412426 3412440 AGATCGTATTCACCA GCCGGGT ACAT GCCCGGC ATTTCGGCGGTTTCG TERM 3104 3413010 - 3412999 - H 76 -3.6 -5.0133 | overlap 3413000 GATTTGGCGAAAAAA CGCG TCGC CACG CTCAACCGAAAAAAT TERM 3105 3413101 - 3413117 + H 75 -11.5 -3.05384 | opp_overlap 3413085 3413084, overlap 3413103 GCCGGTTCGAATTTC CGGCGCC GGC GGCGCTG TTCCGTGGAGAAAAC TERM 3106 3413103 - 3413115 + H 72 -10.5 -3.08679 | opp_overlap 3413085 3413084, overlap 3413101 CGGTTCGAATTTCCG GCGCC GGC GGCGC TGTTCCGTGGAGAAA TERM 3107 3413868 - 3413823 - g 72 -13.3 -2.52516 | gap 1, overlap 3413822 CCGCTGATCACCAAG GCC-GACGGCACCAAGTTCGGC AAG ACCGAATCCGGCGCCATCTGGC TCGACCCGAAAAAGA Daro_3175 3413136 - 3414410 + | tyrosyl-tRNA synthetase TERM 3108 3414472 - 3414446 - f 100 -14.5 -5.54907 | gap 1, opp_overlap 3414446 GGCAGAAAAGAAAAA CCCCTGG-CTGC GGAT GCAGACCAGGGG TTTTTATTGCGTGCG TERM 3109 3414446 - 3414472 + F 100 -14.5 -5.10461 | gap 1, opp_overlap 3414446 GGCAGAAAAGAAAAA CCCCTGG-CTGC GGAT GCAGACCAGGGG TTTTTATTGCGTGCG Daro_3176 3414577 - 3415257 + | DNA-binding response regulator CreB TERM 3110 3415847 - 3415864 + G 72 -2.5 -4.84359 | overlap 3415849 CTGCTGCTCGCCGCC ACGGCCG CCAT CGGCCTC TTTTTCTCCGGCTGG TERM 3111 3415849 - 3415862 + G 76 -9.5 -4.04397 | overlap 3415847 GCTGCTCGCCGCCAC GGCCG CCAT CGGCC TCTTTTTCTCCGGCT TERM 3112 3416094 - 3416070 - g 78 -6.4 -4.58773 | gap 1, opp_overlap 3416079, overlap 3416072 CGCACGAAATGAAAA GC-CCGCTCAC CGCG GTGATCGGCGC CGCCGAAATCCTCGA Daro_3177 3415265 - 3416689 + | sensory histidine kinase CreC Daro_3178 3417541 - 3416690 - | rRNA (guanine-N1-)-methyltransferase, putative TERM 3113 3416874 - 3416859 - G 81 -8.2 -4.67755 | ACATCCACGGAAAAA CGGACG CTTT CGCCCG GCTGGCGAGTGAAGC TERM 3114 3417610 - 3417578 - H 80 -11.3 -3.30972 | gap 1 GGACAAAATAGGGAA GGCGATGTGCTGCG TGACAC CGCAGC-CAGCGCC CAGCAGACCAAGGTG Daro_3179 3417790 - 3419139 + | hypothetical protein TERM 3115 3419158 - 3419181 + F 100 -16 -4.07568 | gap 1, opp_overlap 3419125 3419142 TGTCTCTGAGCATCA GGCCGGCCGGC AGG GCC-GCCGGCC TTTTGCCGCACCAGC TERM 3116 3419995 - 3419973 - g 73 -4.6 -4.59773 | overlap 3419974 3419975 TCCGATGCCGAAAAA GCCGCCGCGC TGG GCGCCCAGGC GAAAGAACGCGCCCT TERM 3117 3420146 - 3420119 - g 70 -4 -4.63932 | gap 1 CACCCTCGAACAAAA GCGC-CCGGTGAC CCT GCCACTGCTGCGC GAGCTGCTCAACATG Daro_3180 3419484 - 3420176 + | hypothetical protein Daro_3181 3420173 - 3420841 + | HAD family hydrolase TERM 3118 3421321 - 3421296 - g 81 -13.3 -3.40403 | overlap 3421263 CGTGCTGCACGACAA CGTCTTCGGCA GCCA TGCCGACGACG CCGCCCGCCGCGACT TERM 3119 3422218 - 3422173 - g 100 -12.5 -5.24129 | overlap 3422174 GGTGGCGACAAAAAA CGCCGGCGCCGCAAGAAAAAG CCGG CTGCCTCTGGCGGCACCGACA GCACCGCAGAATGAA TERM 3120 3422217 - 3422174 - g 91 -13.8 -3.73995 | overlap 3422173 GTGGCGACAAAAAAC GCCGGCGCCGCAAGAAAAAG CCGG CTGCCTCTGGCGGCACCGAC AGCACCGCAGAATGA Daro_3182 3420889 - 3422232 + | Poly(A) polymerase, PcnB TERM 3121 3422446 - 3422467 + G 70 -10.1 -3.53811 | AAGCCCTGCTCGACG CCCTGCTCG ACAT CGAGCAGCG TTTCGGCCGCGTCCG Daro_3183 3422229 - 3422705 + | 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase Daro_3184 3422702 - 3423064 + | hypothetical protein Daro_3185 3423065 - 3423883 + | ketopantoate hydroxymethyltransferase Daro_3186 3423888 - 3424712 + | pantothenate synthetase Daro_3187 3424803 - 3425186 + | aspartate alpha-decarboxylase TERM 3122 3425209 - 3425236 + F 100 -16.4 -4.7373 | opp_overlap 3425215, overlap 3425215 CTAATTCACATTCAT GAGAAACCCGCC TTTT GGCGGGTTTTTC TTTTTAGTACAATCC TERM 3123 3425230 - 3425215 - f 90 -11.8 -3.98661 | opp_overlap 3425215 3425209 CACATTCATGAGAAA CCCGCC TTTT GGCGGG TTTTTCTTTTTAGTA TERM 3124 3425215 - 3425230 + F 100 -11.8 -5.65496 | opp_overlap 3425215, overlap 3425209 CACATTCATGAGAAA CCCGCC TTTT GGCGGG TTTTTCTTTTTAGTA Daro_3188 3425288 - 3425794 + | hypothetical protein TERM 3125 3425815 - 3425834 + T 78 -9.2 -3.87149 | opp_overlap 3425816, overlap 3425816 CCAGTCCGATAAAAA AGGGCAGC CTTG GCTGCCCC TTTCCGTTTGATCAA TERM 3126 3425833 - 3425816 - T 100 -12.7 -5.252 | opp_overlap 3425815 3425816 CAGTCCGATAAAAAA GGGCAGC CTTG GCTGCCC CTTTCCGTTTGATCA TERM 3127 3425816 - 3425833 + T 78 -12.7 -2.91807 | opp_overlap 3425816, overlap 3425815 CAGTCCGATAAAAAA GGGCAGC CTTG GCTGCCC CTTTCCGTTTGATCA TERM 3128 3425854 - 3425875 + T 71 -9.5 -3.53012 | gap 1 CGTTTGATCAAGCGT CCGAAGGCTC CAC GA-CCTTCGG TTTGCGCGGCCGCGC Daro_3189 3427111 - 3425846 - | hypothetical protein TERM 3129 3425882 - 3425896 + g 82 -12.8 -3.66178 | GACCTTCGGTTTGCG CGGCCG CGC CGGCCG TTTGGGCTTGGCCGG Daro_3190 3427266 - 3427694 + | cytochrome c, class I TERM 3130 3427688 - 3427670 - f 72 -8.8 -3.83155 | overlap 3427663 GATCAACACCAACAA CTGGCCGC CTA ACAGCCAG GGCTGATCGAGAGGA Daro_3191 3427713 - 3429089 + | cytochrome c oxidase, subunit I TERM 3131 3429139 - 3429117 - f 93 -14.8 -3.11687 | opp_overlap 3429117, overlap 3429109 CCAAGTAGCACTCAA GGCGCGGTTC TTC GGACCGCGCC TTTTTTATTTGGGTC TERM 3132 3429117 - 3429139 + F 100 -17 -5.65927 | opp_overlap 3429109 3429117 CCAAGTAGCACTCAA GGCGCGGTTC TTC GGACCGCGCC TTTTTTATTTGGGTC Daro_3192 3429188 - 3429793 + | putative additional subunit of nitric oxide reductase (Nor) complex, membrane protein Daro_3193 3429793 - 3430059 + | hypothetical protein Daro_3194 3430056 - 3430838 + | ATPase TERM 3133 3430882 - 3430860 - g 100 -14.8 -4.71426 | CTTTGAGGAAGAAAA GGCCGGCCAG AAT CTGGCCGTCC TCGCCGAAGCACTGT Daro_3195 3430819 - 3431238 + | hypothetical protein TERM 3134 3431272 - 3431243 - g 75 -2.7 -4.88129 | gap 1, opp_overlap 3431260 3431261 3431263 AAAAAGCATGAAAAA GCCAGCTTTGCAGC GTT ACCGCCT-GCTGGC GCAGATGGGCTTTTT TERM 3135 3432196 - 3432229 + G 73 -4.4 -4.63542 | opp_overlap 3432186 3432203 3432221 3432224, overlap 3432197 3432224 AATTATTGCGCTGGG TCAGCAACGATGCG GCCAAA CGCAACGAGGCTGG TTTTTCAGCCTTATC Daro_3196 3431235 - 3432296 + | iron-sulfur cluster-binding protein TERM 3136 3432971 - 3432951 - g 85 -12.5 -3.7732 | GCGGCACAGGAAGAA GCGCTTCGC CAA GCGATGCGC CAGCCGGGATCGGTC TERM 3137 3433031 - 3433017 - g 80 -3.5 -5.09426 | CTGAATTCGAAAAAA TCGCG TCCGC CGCAA CCGGTCCTGCTCTGG Daro_3197 3432444 - 3434282 + | von Willebrand factor, type A Daro_3198 3434358 - 3435053 + | Crp/FNR family transcriptional regulator TERM 3138 3435109 - 3435080 - T 95 -13.7 -3.56594 | opp_overlap 3435087, overlap 3435087 CCAAATTTGCGGAAA TAAAAAAGGGGGC CAAG GCCCCCTTTTTTC ATGACACTGACCGAT TERM 3139 3435087 - 3435102 + T 100 -11.8 -5.14965 | opp_overlap 3435080 3435087 TGCGGAAATAAAAAA GGGGGC CAAG GCCCCC TTTTTTCATGACACT TERM 3140 3435102 - 3435087 - T 100 -11.8 -5.63517 | opp_overlap 3435087, overlap 3435080 TGCGGAAATAAAAAA GGGGGC CAAG GCCCCC TTTTTTCATGACACT Daro_3199 3449688 - 3435124 - | VCBS TERM 3141 3438181 - 3438163 - G 79 -14.6 -2.94099 | overlap 3438173 CTCGCTGATCAGAGA GGCCAAGG CAG CCTTGGCC ATGTCCAGACGCGTT TERM 3142 3447195 - 3447227 + g 73 -13.3 -2.77148 | overlap 3447191 3447186 ACTGGAGGCTGCCAT CGACATCGGTCCCGC TCA GCGGGACCGCAATCG TGCTGTCTTCGTCAC TERM 3143 3447786 - 3447818 + g 73 -13.3 -2.77148 | overlap 3447782 3447777 ACTGGAGGCTGCCAT CGACATCGGTCCCGC TCA GCGGGACCGCAATCG TGCTGTCTTCGTCAC TERM 3144 3448377 - 3448409 + g 73 -13.3 -2.77148 | overlap 3448373 3448370 3448399 ACTGAATGCTGCCAT CGACATCGGTCCCGC TCA GCGGGACCGCAATCG TGCTGTCTTCGTCAC TERM 3145 3449797 - 3449780 - R 80 -5.5 -5.00884 | overlap 3449791 AGTTGTTGTAAAAAA GCGTGAA TAAA CCCACGC TGGCGAGTTAAAAAT Daro_3200 3450422 - 3449805 - | LuxR family transcriptional regulator TERM 3146 3450163 - 3450128 - G 76 -12.6 -3.36803 | gap 1 CAACCTGACGCAGAA CTTCGGGC-GCTGCATT GGT ATTGCAGCAGCCCGACG CCCCCAGGGCCAAGG Daro_3201 3451837 - 3450422 - | Type I secretion membrane fusion protein, HlyD TERM 3147 3451380 - 3451346 - G 78 -9.9 -3.85698 | opp_overlap 3451346 3451345 CGGCGGCGGCACAAA CGGCTTGCCTTCAGA AATCG CCCGCAGGCGAGCCG CTTTGGCAACCAAAC Daro_3202 3454011 - 3451834 - | ABC transporter, transmembrane region:ABC transporter related TERM 3148 3452585 - 3452602 + g 72 -2.5 -4.79223 | overlap 3452575 3452583 3452586 ACAAAGTTGGCGTCG GCCGGCC TTTC GACCGGG TTTTTCATGATCTGC TERM 3149 3454099 - 3454069 - R 90 -9.9 -4.44046 | gap 1, opp_overlap 3454077, overlap 3454077 3454079 TGCAGTTCAAAGAAA TGTAAAAAGGCGGC CGAG ACCGCCTTTTT-CA GGAAAGCGCCCGGCC TERM 3150 3454077 - 3454092 + r 82 -7.5 -4.56597 | opp_overlap 3454077 3454069 3454079 AAAGAAATGTAAAAA GGCGG CCGAGA CCGCC TTTTTCAGGAAAGCG TERM 3151 3454092 - 3454077 - R 93 -8.2 -4.88295 | opp_overlap 3454077, overlap 3454069 3454079 AAAGAAATGTAAAAA GGCGGC CGAG ACCGCC TTTTTCAGGAAAGCG hppA 3456183 - 3454117 - | membrane-bound proton-translocating pyrophosphatase Daro_3204 3457471 - 3456212 - | 6-phosphofructokinase TERM 3152 3456834 - 3456851 + g 71 -7.7 -4.07568 | gap 1, opp_overlap 3456834 GGGAAGAGCAGGATA TG-CGGCG GTT CGCCGGCA TTTTCGGACGCCAGG adk 3458135 - 3457482 - | adenylate kinase Daro_3206 3458995 - 3458210 - | 3-deoxy-D-manno-octulosonate cytidylyltransferase Daro_3207 3459171 - 3458995 - | hypothetical protein Daro_3208 3460153 - 3459152 - | lipid-A-disaccharide synthase TERM 3153 3459530 - 3459500 - G 78 -10.5 -3.88946 | gap 1, overlap 3459497 GACGCGATAGAACAA GCCGGGC-TTGAGA CTCA TCTCAAAGCTCGGC GTCGCAGTCGGCAGG TERM 3154 3460120 - 3460090 - G 79 -9.7 -4.2679 | gap 1, opp_overlap 3460097, overlap 3460058 3460094 3460097 CAAGCGGCAGCAAAA GCCACAACGCCGGC TGAC GCCGGCGTTG-ATC GAACCACTGTCGCTG TERM 3155 3460117 - 3460094 - G 86 -18.2 -2.77781 | opp_overlap 3460097, overlap 3460058 3460090 3460097 CGGCAGCAAAAGCCA CAACGCCGGC TGAC GCCGGCGTTG ATCGAACCACTGTCG TERM 3156 3460097 - 3460114 + g 78 -14.1 -3.14344 | opp_overlap 3460058 3460094 3460090 3460097 CAGCAAAAGCCACAA CGCCGGC TGAC GCCGGCG TTGATCGAACCACTG TERM 3157 3460114 - 3460097 - G 86 -14.1 -3.53184 | opp_overlap 3460097, overlap 3460058 3460094 3460090 CAGCAAAAGCCACAA CGCCGGC TGAC GCCGGCG TTGATCGAACCACTG Daro_3209 3460566 - 3460153 - | biopolymer transport protein ExbD/TolR Daro_3210 3461175 - 3460570 - | MotA/TolQ/ExbB proton channel TERM 3158 3462039 - 3462021 - g 89 -7.4 -5.08824 | overlap 3462023 GCGCCAGTCAAAAAA TAGCCGAA GCC CTCGGCCA GGCCAGTGCCAGCGA TERM 3159 3462037 - 3462023 - g 75 -7.8 -4.17608 | overlap 3462021 GCCAGTCAAAAAATA GCCGAA GCC CTCGGC CAGGCCAGTGCCAGC TERM 3160 3462436 - 3462415 - g 74 -6.6 -4.30576 | gap 1, overlap 3462416 3462418 GCGCCAGCAGGAAAA CGAGGCGCT CAGCC AGCGCCT-G CAACGCGCCCTGCTC Daro_3211 3461459 - 3462811 + | exodeoxyribonuclease VII large subunit Daro_3212 3462851 - 3463435 + | manganese and iron superoxide dismutase TERM 3161 3463465 - 3463481 + T 100 -12.3 -4.72272 | opp_overlap 3463465 ATTTCAGGACAAAAA GGGAGCT AGC AGCTCCC TTTTTCATGGACGCA TERM 3162 3463481 - 3463465 - T 100 -12.3 -4.91511 | opp_overlap 3463465 ATTTCAGGACAAAAA GGGAGCT AGC AGCTCCC TTTTTCATGGACGCA TERM 3163 3463614 - 3463598 - T 75 -4.4 -4.7497 | TCGAGTGATTAAAAA TAGCGC GCTCA GCACTA ATCCCATCGCTGCTG Daro_3213 3464280 - 3463612 - | hypothetical protein TERM 3164 3464329 - 3464302 - H 70 -4.9 -4.57837 | gap 1, opp_overlap 3464310, overlap 3464303 AGACTCCGTCAAAAA TCGGAAG-ACTC GAATT GAGTGCTTCCGT GACGCCTCTCCCCCT Daro_3214 3464728 - 3466932 + | hypothetical protein TERM 3165 3467337 - 3467356 + G 82 -12.8 -3.56568 | overlap 3467354 CGAAGCGCTATGGGT GCCGCGCC TGCA GGCGTGGC TTTCCGGCCTGCTTC TERM 3166 3467738 - 3467724 - g 76 -12.8 -3.32844 | CTTTCGACTCGACAA CCGGCG GGT CGCCGG GATCATGACACCGGC TERM 3167 3467818 - 3467831 + G 70 -5.2 -4.50976 | opp_overlap 3467818 AAGACCTTGCAGGAA CGGG CAGTTT CCCG TTTTCTGGTGTGCAA Daro_3215 3467101 - 3468396 + | CBS:protein of unknown function DUF21:transporter-associated region TERM 3168 3469080 - 3469043 - g 84 -10.5 -4.23999 | gap 1 CGACAGCGAAAACAA TGGCCGATCGACGCCCGA GAG CCGGGCAGCGCT-GGCCA AACCGGTGACACTGG Daro_3216 3468531 - 3470534 + | type II and III secretion system secretin Daro_3217 3470531 - 3471010 + | N-terminal methylation site Daro_3218 3471013 - 3471393 + | general secretion pathway protein G Daro_3219 3471387 - 3471920 + | hypothetical protein Daro_3220 3472527 - 3471889 - | lytic transglycosylase, catalytic TERM 3169 3472882 - 3472872 - g 75 -8.2 -4.21194 | TCCGACCAGCGAAAA CGGC CTG GCCG CGCTGATGAAGCGGC Daro_3221 3472606 - 3473076 + | general secretion pathway protein G TERM 3170 3474104 - 3474088 - g 77 -7.9 -4.36914 | opp_overlap 3474095 CTGTTGGCGAGAAAA GCGGCCA GCT CGGCCAC ATGCTGGAGTCGGTG Daro_3222 3473088 - 3474272 + | type II secretion system protein Daro_3223 3474282 - 3475976 + | type II secretion system protein E Daro_3224 3475957 - 3476724 + | hypothetical protein Daro_3225 3476711 - 3477247 + | hypothetical protein Daro_3226 3477229 - 3477801 + | hypothetical protein TERM 3171 3477836 - 3477870 + G 74 -3.5 -4.82901 | gap 2, overlap 3477837 GCGCTGGCTGATTCT TGGCGCCCTGTTGCTCG GCA CG-GTAGC-GGCCGCCG TTTTTGTCGACGACG Daro_3227 3477798 - 3478319 + | proline-rich transmembrane protein Daro_3228 3479092 - 3478370 - | hypothetical protein TERM 3172 3478476 - 3478521 + g 77 -11.1 -3.65351 | gap 1, overlap 3478480 CCGTACGCTGCCAGT TTCTCG-TCAGTCGCTTGCGGC CAG GCTGCAGGCGCCTGGGCGTGGA TTTCCCTGAGGATCA TERM 3173 3479118 - 3479138 + r 74 -8.2 -3.91716 | CTCTTCAAATGCGTA GAGCGCCT GCATG AGGCGCCC TTGTTTAAGCACTAA TERM 3174 3479187 - 3479163 - R 100 -17.1 -3.58037 | CACTAATTCCGGAAA CAGGCGACGGC TCG GCCGCCGCCCG AACCGGGATCAGAAG Daro_3229 3480779 - 3479196 - | alkaline phosphatase TERM 3175 3480840 - 3480855 + r 100 -7.6 -5.27335 | opp_overlap 3480825 GGCGCTTGAATGCCG CAATCG CCAG CGATTG TTTTTATTTCCAGCG Daro_3230 3481954 - 3481085 - | Alpha/beta hydrolase fold Daro_3231 3482648 - 3481962 - | dienelactone hydrolase TERM 3176 3482689 - 3482671 - R 100 -14.6 -5.40072 | CCTGTTTCAAAAAAA CGGCCATC AAC GATGGCCG AAAAGTCCCACAGAG Daro_3232 3483158 - 3482721 - | phenylacetic acid degradation-related protein Daro_3233 3483599 - 3483180 - | phenylacetic acid degradation-related protein Daro_3234 3484348 - 3483602 - | ABC transporter related TERM 3177 3483827 - 3483796 - G 72 -13 -3.05536 | gap 1, overlap 3483787 AAATGACGTGGAAGA CCTCGGCCATGACGC GCG GCGCCA-GGCCGAGC GACGGCTCGTCGAGC Daro_3235 3486138 - 3484345 - | inner-membrane translocator:ABC transporter related TERM 3178 3485984 - 3485957 - G 77 -8.3 -4.4017 | overlap 3485959 3485974 CCAAGGCCGACAAAA GCCGCCTGCCC GAAGGA GGTCAGGCCGC CGATACCGGTCAGCA TERM 3179 3486103 - 3486117 + g 83 -4.2 -5.14965 | opp_overlap 3486097 3486105, overlap 3486105 GAAGAACCAGCCGAA CATCAG CCA CTGAAG TTTTTTGGTGGACAT Daro_3236 3487184 - 3486135 - | inner-membrane translocator TERM 3180 3487031 - 3487008 - G 86 -13.2 -3.54741 | gap 1 GATCAGTTTCGGAAA CTGGCC-CCCT TGC AGGGCGGCCAG CGTCAAGGCGCCAAA Daro_3237 3488208 - 3487207 - | ferredoxin:oxidoreductase FAD/NAD(P)-binding:oxidoreductase FAD-binding region TERM 3181 3487408 - 3487372 - G 73 -9.3 -3.91897 | gap 1, overlap 3487356 GGCCGCATGGACAAA GCCGGTGCGCCCGGCC CATTCC GGCCCGGC-CTCCGAC AACACCGGAACGAGG Daro_3238 3489275 - 3488214 - | 4-hydroxy-2-ketovalerate aldolase Daro_3239 3490231 - 3489287 - | acetaldehyde dehydrogenase TERM 3182 3489676 - 3489699 + g 73 -10.3 -3.68886 | TGGCCGCGCCGCCGA CCGCCTCGA TGGCCT TCGAGGTGG TTTCGGTGAATTCGT TERM 3183 3490330 - 3490320 - R 72 -6.8 -4.26903 | GTTATTTGAGGAAAA CGAC GCG GTCG AGCTTGGGCGAGGTG Daro_3240 3492105 - 3490306 - | feruloyl-CoA synthase Daro_3241 3493263 - 3492118 - | extracellular ligand-binding receptor Daro_3242 3494109 - 3493327 - | hydratase/decarboxylase TERM 3184 3493798 - 3493779 - G 81 -13.6 -3.28712 | opp_overlap 3493778 3493777, overlap 3493783 GGTCGCGCCCGACAA CGAAGGCG ATCT CGCCTTCG GCTTTCGGCTGGATC Daro_3243 3495138 - 3494134 - | 2-nitropropane dioxygenase, NPD TERM 3185 3495141 - 3495155 + r 71 -2.1 -5.00339 | GCTTGGCCTTCATGT TTCCT CCGTT GGGAA TTTTTAGTTGTTCGT Daro_3244 3495991 - 3495197 - | 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase TERM 3186 3495854 - 3495829 - G 86 -14.7 -3.41051 | opp_overlap 3495820 3495818, overlap 3495808 CCAGGCTGACGACAA CCCGGTCGCCG AACT CGGCAACCAGG CTGTCGGCCTGCTTC Daro_3245 3496535 - 3495999 - | 3-phenylpropionate dioxygenase subunit beta Daro_3246 3497902 - 3496532 - | ring hydroxylating dioxygenase, alpha subunit:Rieske (2Fe-2S) region Daro_3247 3498265 - 3497921 - | Rieske (2Fe-2S) region TERM 3187 3497988 - 3497961 - G 77 -12 -3.64703 | opp_overlap 3497957 GCTTCCTGATCGAAA TCGACCATGACG GCAT CGCCCTGGTCGA TCACCTTGTAGGTCC TERM 3188 3498199 - 3498236 + g 74 -3.4 -4.7254 | gap 1, opp_overlap 3498206, overlap 3498202 3498203 TCGCGTTGCCGCAGA GATCGAACTTGCGGACC TTGCC GG-CCTCAAGTTCATTC TTTTTCATCACGAAT Daro_3248 3499111 - 3498275 - | protocatechuate 4,5-dioxygenase subunit beta Daro_3249 3499429 - 3499130 - | hypothetical protein Daro_3250 3500264 - 3499443 - | Alpha/beta hydrolase fold Daro_3251 3500564 - 3501181 + | regulatory protein, TetR TERM 3189 3501181 - 3501170 - T 79 -4.4 -5.00616 | overlap 3501173 3501175 CTCTTGCTGAAAAAA TCAG ACGC CTGA CCCCAGGCGAGCTCG TERM 3190 3501190 - 3501175 - T 70 -10.4 -3.25177 | overlap 3501170 3501173 GCTGAAAAAATCAGA CGCCTG ACCC CAGGCG AGCTCGCGATTTTGC Daro_3252 3501827 - 3501297 - | chorismate lyase TERM 3191 3501507 - 3501494 - G 70 -3.7 -4.70659 | CTGGATAGGCAAAAA GCAGG GAAC CCAGC GAACGACTGCCCAGA Daro_3253 3502270 - 3501827 - | hypothetical protein Daro_3254 3502838 - 3502263 - | ribosomal large subunit pseudouridine synthase E Daro_3255 3503678 - 3502983 - | hypothetical protein TERM 3192 3503806 - 3503777 - R 81 -10.8 -3.66058 | opp_overlap 3503784, overlap 3503784 ACAGGATATAGACAA CAAAAAACCCGC ACTCAG GCGGGTTCTCTG GACTTCGACGTAAAG TERM 3193 3503799 - 3503784 - R 100 -7.5 -5.62045 | opp_overlap 3503784, overlap 3503777 ATAGACAACAAAAAA CCCGC ACTCAG GCGGG TTCTCTGGACTTCGA Daro_3256 3505242 - 3503998 - | nucleoside recognition Daro_3257 3506281 - 3505415 - | hypothetical protein TERM 3194 3505613 - 3505600 - G 77 -3.1 -4.92363 | gap 1, overlap 3505588 3505602 AAACATGCAGAAAAA TGCACG ACC CG-GCA CCCGGCAACGGCGGC TERM 3195 3506492 - 3506480 - H 73 -9.1 -3.69323 | opp_overlap 3506484 TGAGTAGCACCCAAA CGGCT CAT AGCCG TGCGCCGCGGTCATG TERM 3196 3506526 - 3506562 + H 70 -4.3 -4.56597 | opp_overlap 3506533, overlap 3506530 3506533 GCCACGGCTCTGGAT TTACGAAGCCCACGCTT GAA ACGCTTGGGCTTCTTGC TTTTTAGCGACCGAA TERM 3197 3506530 - 3506558 + H 88 -11.7 -3.80855 | opp_overlap 3506533, overlap 3506526 3506533 CGGCTCTGGATTTAC GAAGCCCACGCTT GAA ACGCTTGGGCTTC TTGCTTTTTAGCGAC TERM 3198 3506533 - 3506555 + H 74 -7.6 -4.0257 | opp_overlap 3506533, overlap 3506530 3506526 CTCTGGATTTACGAA GCCCACGCTT GAA ACGCTTGGGC TTCTTGCTTTTTAGC Daro_3258 3506653 - 3507339 + | phospholipase/carboxylesterase Daro_3259 3507391 - 3507720 + | hypothetical protein TERM 3199 3508103 - 3508078 - T 75 -11.9 -3.01924 | opp_overlap 3508078, overlap 3508095 CATCTCTCCGGAATA CCCGTCAGCAT CGAA ATGCTGACGCG TTTCGTCAGTGGCTA TERM 3200 3508078 - 3508103 + T 88 -11.9 -3.767 | opp_overlap 3508078 3508095 CATCTCTCCGGAATA CCCGTCAGCAT CGAA ATGCTGACGCG TTTCGTCAGTGGCTA Daro_3260 3509695 - 3508109 - | cytochrome d1, heme region TERM 3201 3508725 - 3508707 - G 70 -4.5 -4.46854 | TGAGTGAAGAAGAAA TCGTCGA GGTAG TCGTCGA GCTGCGTGCGCTGCG Daro_3261 3510831 - 3509692 - | radical SAM family protein TERM 3202 3512144 - 3512121 - g 79 -8.8 -4.25104 | overlap 3512134 CTTTGCCCAGGAAAA GCGCGAAAGC GAAC GTTTCCGCGC CGCCAACGAACACAA Daro_3262 3510958 - 3513252 + | ABC transporter, transmembrane region:ABC transporter related Daro_3263 3513256 - 3513726 + | hypothetical protein TERM 3203 3514643 - 3514668 + G 74 -6.9 -4.29738 | gap 1, opp_overlap 3514642 3514645 AGTCGTCGTCAAACC CACCGACGGC AACCACG GCCGT-GGTG TTTTCATCGATCTGA TERM 3204 3514724 - 3514697 - g 72 -11.2 -3.27743 | opp_overlap 3514723, overlap 3514695 GACGACCAAGGAAGA GGTCGCCAAGGC CTAT GCCATCGCGACC GAGGAAGGCTCCGGT Daro_3264 3513858 - 3516113 + | cyanophycin synthetase TERM 3205 3518057 - 3518073 + G 76 -6.5 -4.57073 | overlap 3518023 GCGGGTCGTCTACGT TGAACGC GAT GCGATCA TTTTTGGCGAAGGTG Daro_3265 3516129 - 3518702 + | cyanophycin synthetase TERM 3206 3518753 - 3518726 - f 89 -14.2 -3.27029 | opp_overlap 3518731, overlap 3518731 GCCCACCAAGCAAGA CAAAAGCCCGGC CAAC GCCGGGCTTTTT TTGGCCAGCCAGCAT TERM 3207 3518731 - 3518748 + F 100 -14.1 -5.40072 | opp_overlap 3518726 3518731 CCAAGCAAGACAAAA GCCCGGC CAAC GCCGGGC TTTTTTTGGCCAGCC TERM 3208 3518748 - 3518731 - f 100 -14.1 -4.73864 | opp_overlap 3518731, overlap 3518726 CCAAGCAAGACAAAA GCCCGGC CAAC GCCGGGC TTTTTTTGGCCAGCC Daro_3266 3518935 - 3519747 + | oxidoreductase FAD/NAD(P)-binding:oxidoreductase FAD-binding region Daro_3267 3520552 - 3520076 - | AsnC family transcriptional regulator Daro_3268 3521007 - 3520549 - | AsnC family transcriptional regulator Daro_3269 3521968 - 3521000 - | AsnC family transcriptional regulator Daro_3270 3523131 - 3521968 - | cytochrome d1, heme region Daro_3271 3523471 - 3523139 - | hypothetical protein Daro_3272 3523814 - 3523464 - | blue (type1) copper domain-containing protein TERM 3209 3523620 - 3523607 - G 73 -4.5 -4.65895 | CCTCTGACGGAAAAA CAACC GAAT GGCTG GTCCGTTTTTCGTGA TERM 3210 3523774 - 3523739 - G 86 -12.1 -3.98083 | gap 2, opp_overlap 3523746, overlap 3523740 3523746 GAGCCAAGGCAGAAA TGGAAAAGAGCGCCAGC AGCA GC-GGCGCTCTTTT-CA GAGACATCCATCCGG TERM 3211 3523774 - 3523740 - G 76 -13.7 -2.98368 | gap 1, opp_overlap 3523746, overlap 3523739 3523746 AGCCAAGGCAGAAAT GGAAAAGAGCGCCAGC AGCA GC-GGCGCTCTTTTCA GAGACATCCATCCGG TERM 3212 3523746 - 3523768 + g 84 -11.3 -4.08216 | gap 1, opp_overlap 3523746 3523739 3523740 GGCAGAAATGGAAAA GAGCGCCAGC AGCA GC-GGCGCTC TTTTCAGAGACATCC TERM 3213 3523768 - 3523746 - G 93 -11.3 -4.39571 | gap 1, opp_overlap 3523746, overlap 3523739 3523740 GGCAGAAATGGAAAA GAGCGCCAGC AGCA GC-GGCGCTC TTTTCAGAGACATCC Daro_3273 3524663 - 3523821 - | hypothetical protein TERM 3214 3524033 - 3524043 + g 75 -8.2 -4.28254 | overlap 3524025 CCTCGGCGGCAACGC CGGC CTT GCCG TTTTCCATGTTGCGC TERM 3215 3524739 - 3524764 + r 100 -20.5 -3.65902 | ATTGCTGTTTCATAT GCTACGGGGGC TTGC GCCCCCGTAGC TTTAAGTCAAATCAA Daro_3274 3526480 - 3524795 - | cytochrome d1, heme region Daro_3275 3526740 - 3527504 + | uroporphyrinogen-III C-methyltransferase Daro_3276 3527501 - 3527899 + | hypothetical protein TERM 3216 3528044 - 3528021 - f 70 -6.6 -4.08546 | opp_overlap 3528022, overlap 3528022 ACCAGTAACGACAAA TCGGCTTTCC TGAC GGAAGGCCGT TTTTGTTTATCACAT TERM 3217 3528022 - 3528043 + F 100 -12.3 -5.38054 | opp_overlap 3528021 3528022 CCAGTAACGACAAAT CGGCTTTCC TGAC GGAAGGCCG TTTTTGTTTATCACA Daro_3277 3528074 - 3529132 + | queuosine biosynthesis protein tgt 3529122 - 3530231 + | queuine tRNA-ribosyltransferase yajC 3530275 - 3530601 + | preprotein translocase subunit YajC TERM 3218 3530629 - 3530613 - f 93 -11.5 -4.17023 | opp_overlap 3530613 GTAATCACCCCAAAA GGCGGCC CCA AGCCGCC TTTTTCGCTTTAAAG TERM 3219 3530613 - 3530629 + F 100 -10.8 -4.81249 | opp_overlap 3530613 GTAATCACCCCAAAA GGCGGC CCCAA GCCGCC TTTTTCGCTTTAAAG TERM 3220 3531417 - 3531378 - g 76 -12.2 -3.30441 | gap 1, overlap 3531391 CACCACGCTGCACAA CCGGATCAACGAACTCGGC GTC GCCGAA-CCGGTGATCCAG CAACAAGGCGCCGAC secD 3530650 - 3532527 + | preprotein translocase subunit SecD secF 3532540 - 3533484 + | preprotein translocase subunit SecF TERM 3221 3533504 - 3533532 + T 100 -14.7 -3.60792 | opp_overlap 3533510, overlap 3533510 CAAAACTGCCCCATG AAAAAAGCCGCCA AAT TGGCGGCTTTTTC TTTACCAGTTCGGCG TERM 3222 3533510 - 3533526 + T 100 -13.7 -5.27938 | opp_overlap 3533510, overlap 3533504 TGCCCCATGAAAAAA GCCGCCA AAT TGGCGGC TTTTTCTTTACCAGT TERM 3223 3533526 - 3533510 - T 100 -13.7 -5.14563 | opp_overlap 3533510 3533504 TGCCCCATGAAAAAA GCCGCCA AAT TGGCGGC TTTTTCTTTACCAGT Daro_3282 3534229 - 3533534 - | cytochrome B561 TERM 3224 3533655 - 3533643 - G 76 -6.9 -4.4648 | overlap 3533647 AGGGCGACGACAAAA GCGAC CCA GCCGC CGCCGGTGGCCGATG TERM 3225 3534270 - 3534251 - R 100 -13.6 -5.42259 | opp_overlap 3534266 TTATCGTTAAAAAAA CAGGCACC CTCA GGTGCCTG CTGACGTGCGGCATG Daro_3283 3534749 - 3534291 - | cytochrome c, class II TERM 3226 3535705 - 3535695 - g 72 -2.4 -4.8083 | overlap 3535703 GAAGAGCAGGAAAAA TCCG AAA CGGC GCTACGTCATGCCAT Daro_3284 3535014 - 3537584 + | PAS/PAC sensor signal transduction histidine kinase Daro_3285 3537581 - 3538669 + | response regulator receiver Daro_3286 3539022 - 3538705 - | hypothetical protein Daro_3287 3539298 - 3539023 - | hypothetical protein TERM 3227 3539198 - 3539222 + g 80 -14.4 -3.05844 | CCTCCCCGGATAGCG CCACGGATCA CTTCC TGATCCGTGG TCTTGCGATCACCGG Daro_3288 3540669 - 3539302 - | adenylosuccinate lyase Daro_3289 3540764 - 3541372 + | glutathione S-transferase TERM 3228 3541415 - 3541389 - f 79 -12.2 -3.05384 | opp_overlap 3541389 3541392, overlap 3541392 3541394 CCGGGTTTCAGGCAA TCAGAGGGCGCC ACT GGCGCCCTCTTC ATTTCACCGAAATGA TERM 3229 3541389 - 3541416 + F 78 -10.6 -3.53811 | gap 1, opp_overlap 3541389 3541392 3541394, overlap 3541392 CCGGGTTTCAGGCAA T-CAGAGGGCGCC ACT GGCGCCCTCTTCA TTTCACCGAAATGAA TERM 3230 3541392 - 3541412 + F 100 -18.3 -3.51232 | opp_overlap 3541392 3541389 3541394, overlap 3541389 GGTTTCAGGCAATCA GAGGGCGCC ACT GGCGCCCTC TTCATTTCACCGAAA TERM 3231 3541412 - 3541392 - f 100 -18.3 -2.75064 | opp_overlap 3541389 3541392, overlap 3541389 3541394 GGTTTCAGGCAATCA GAGGGCGCC ACT GGCGCCCTC TTCATTTCACCGAAA TERM 3232 3541410 - 3541394 - f 90 -15.1 -2.92192 | opp_overlap 3541392 3541389, overlap 3541392 3541389 TTTCAGGCAATCAGA GGGCGCC ACT GGCGCCC TCTTCATTTCACCGA Daro_3290 3541490 - 3542098 + | metal dependent phosphohydrolase Daro_3291 3543201 - 3542104 - | tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase Daro_3292 3543748 - 3543194 - | hypothetical protein TERM 3233 3543289 - 3543306 + g 83 -2.5 -5.1675 | opp_overlap 3543287 3543289, overlap 3543280 TATCGACGACGAAGA GCGCCGG CTCA CCATCGC TTTTTTCCTCGATCA Daro_3293 3544203 - 3543748 - | NUDIX hydrolase TERM 3234 3544626 - 3544612 - g 77 -11.4 -3.63922 | opp_overlap 3544585, overlap 3544610 ACGGCTCGGAAAAGA TGGGCG TTT CGCCCA AGGGCGCCAAGGTGC TERM 3235 3545015 - 3545003 - g 71 -6.9 -4.1899 | CGAGGTCATCGAAAA GCGCA TCA CGCGC GACGAAGTCTATTGC Daro_3294 3544287 - 3545207 + | branched-chain amino acid aminotransferase Daro_3295 3545222 - 3545410 + | hypothetical protein TERM 3236 3545418 - 3545440 + F 95 -12.7 -4.18018 | opp_overlap 3545412 ATCACTAATCACCGG GTGGCGGGT CGCAA GCCCGCCAC TTTTGCATGAACAAG TERM 3237 3546424 - 3546410 - g 71 -6.4 -4.1552 | opp_overlap 3546410 GACTGCCTGAACAAA CTGTCC CCC GAACAG GTTTTCGCCGCCTGC Daro_3296 3545447 - 3546460 + | lipopolysaccharide heptosyltransferase II Daro_3297 3546457 - 3546888 + | hypothetical protein Daro_3298 3546885 - 3547841 + | esterase/lipase/thioesterase family protein TERM 3238 3548554 - 3548533 - g 78 -10.1 -3.93556 | overlap 3548534 AGGCACTCAAGGAAA CCGATGCCG AGAT CGGCATCGC CTTCGACGGCGACGG TERM 3239 3548553 - 3548534 - g 75 -13.6 -2.95652 | overlap 3548533 GGCACTCAAGGAAAC CGATGCCG AGAT CGGCATCG CCTTCGACGGCGACG Daro_3299 3547851 - 3549227 + | phosphomannomutase Daro_3300 3549237 - 3550490 + | EAL TERM 3240 3550513 - 3550502 - f 75 -7.2 -4.40572 | ATAAGCGTTACAAAA CCGC TACA GCGG GACCACAAGCCGCCA Daro_3301 3550575 - 3550952 + | hypothetical protein Daro_3302 3551269 - 3550967 - | hypothetical protein TERM 3241 3551024 - 3551072 + g 71 -6.6 -4.18506 | gap 1, opp_overlap 3551046, overlap 3551027 GTCGCCGGGCATGAT GGTCCGCCC-GACGCCGAACA CACCACCC TGTGCGTCGACTGGGCGGGTC TTGTTTTCCGGATAC alaS 3553881 - 3551266 - | alanyl-tRNA synthetase TERM 3242 3551920 - 3551883 - G 70 -9.9 -3.53012 | gap 1, overlap 3551919 CGCCGGTGCGCGAAA CATGGGTTCCGCCGCACA GTT CGCGCGA-GGAACCGATG TCGAGGACGCGCACG TERM 3243 3552755 - 3552785 + g 74 -11.8 -3.53091 | overlap 3552781 AGCGACTTCAGTTCG CCTTCGAGGATGGC CAT GCCGTGCTCGATGG TTTCGAAGAAGCGGT TERM 3244 3554016 - 3554001 - R 100 -7.5 -5.93252 | opp_overlap 3554001 CCGAAAAAGAAAAAA CCCGC TCGATG GCGGG TTTCGGATGGAACGC Daro_3304 3554394 - 3554041 - | hypothetical protein ugpQ 3555202 - 3554459 - | cytoplasmic glycerophosphodiester phosphodiesterase TERM 3245 3554879 - 3554867 - G 70 -10.5 -3.53012 | opp_overlap 3554867 CGTCTGGCGCTCAAA GCCGG TTG CCGGC TTGATCTCGACATTG Daro_3306 3556513 - 3555203 - | extracellular solute-binding protein Daro_3307 3556606 - 3556986 + | hypothetical protein TERM 3246 3559411 - 3559397 - g 70 -5 -4.56775 | overlap 3559398 3559402 ATGGTCTTCGAAAAA TTCAAG CAG CTCGAA AGCTTCCTGACTCGC Daro_3308 3557030 - 3559567 + | sensor histidine kinase Daro_3309 3559560 - 3559925 + | response regulator receiver TERM 3247 3560501 - 3560479 - g 81 -5.4 -4.74103 | overlap 3560480 CGCCGAACTGAAAAA GGGCGTCGAA ATT CTCGTCGCCA CCCCCGGCCGCCTGC TERM 3248 3561357 - 3561329 - g 93 -17.5 -3.30124 | GCCCACCGCCCAGAA CGTCCGGAACGCT CCG AGCGCTCCGAACG GCCGGATCGGGGTGA Daro_3310 3560036 - 3561559 + | helicase, C-terminal:DEAD/DEAH box helicase, N-terminal TERM 3249 3561588 - 3561606 + T 93 -11.7 -4.17048 | opp_overlap 3561588 TTCACCCAATAAAAA TGGCGCC TGATT GGCGCCA TTATTTTGACCGGAA TERM 3250 3561606 - 3561588 - T 100 -11.7 -5.10461 | opp_overlap 3561588 TTCACCCAATAAAAA TGGCGCC TGATT GGCGCCA TTATTTTGACCGGAA Daro_3311 3562426 - 3561629 - | protein phosphatase 2C-like TERM 3251 3561658 - 3561670 + g 88 -6.9 -5.00616 | overlap 3561656 3561660 GCGGCACAAATCCGG CCGGC GGC GTCGG TTTTTTCGGCACGGC TERM 3252 3561734 - 3561749 + g 72 -11.8 -3.35996 | GTCACCGGACCCCTT GGCGCG TTGA CGCGCC TTGTCGATCAGAATC Daro_3312 3563406 - 3562513 - | hypothetical protein TERM 3253 3562809 - 3562789 - G 75 -13.3 -2.94218 | opp_overlap 3562788, overlap 3562799 ACGGGCCACCAGATA GCCGACCAC ACA ATGGTCGGC ATTGAATTTTCTGTC TERM 3254 3562907 - 3562892 - G 89 -10.4 -4.62302 | CAATAGGTCGAAAAA CGCTGC ATCA GCAGCG GCACGCCACAATCGT glcF 3564638 - 3563403 - | glycolate oxidase iron-sulfur subunit glcE 3565700 - 3564651 - | glycolate oxidase FAD binding subunit TERM 3255 3565274 - 3565290 + g 81 -5.8 -4.7373 | opp_overlap 3565274, overlap 3565273 CAATCAGCCGGGAAA CGTCGT AACCG GCGACG TTTTTCATGACCTGG Daro_3315 3567190 - 3565700 - | FAD linked oxidase, C-terminal:FAD linked oxidase, N-terminal Daro_3317 3568257 - 3567484 - | xylose isomerase-like TIM barrel Daro_3318 3568320 - 3568910 + | ATP:cob(I)alamin adenosyltransferase Daro_3319 3568963 - 3569172 + | hypothetical protein TERM 3256 3569634 - 3569675 + G 82 -8.7 -4.42386 | gap 1 GCGGTGCGCTCGATC TGGTCACCTGCTGCGACATG CGT TACGCCGCAGCAGATG-CCA TTTTCTCGATCAAGG Daro_3320 3569252 - 3570073 + | enoyl-CoA hydratase TERM 3257 3570166 - 3570148 - T 100 -11.7 -5.40072 | opp_overlap 3570155 3570158 TCCCGGGCAAAAAAA GACCGGC TAAGC GCCGGTC AATGCATGGACGACT TERM 3258 3570155 - 3570189 + T 70 -7.2 -4.06419 | opp_overlap 3570148, overlap 3570158 CAAAAAAAGACCGGC TAAGCGCCGGTC AATGCATGGAC GACTGGCGCTTG TTATTTCTGGGAAAG TERM 3259 3570158 - 3570186 + T 72 -6.7 -4.15703 | opp_overlap 3570148, overlap 3570155 AAAAAGACCGGCTAA GCGCCGGTC AATGCATGGAC GACTGGCGC TTGTTATTTCTGGGA Daro_3321 3570498 - 3570190 - | cytochrome c, class I TERM 3260 3570594 - 3570578 - R 72 -5.8 -4.42238 | gap 1, overlap 3570555 3570554 3570579 3570591 TGATGGGAATCAAAA GCCG-GC AAAG GCACGGC CGGATGGGGCTCCGC Daro_3322 3572155 - 3570668 - | cyclic nucleotide-binding TERM 3261 3572252 - 3572206 - R 93 -8.7 -4.91873 | opp_overlap 3572209 3572211, overlap 3572207 3572211 CATACTAAGCAAAAA GGCAAGGGGACATAACTCCTC TCTTG GAGGAGTCATGCCCCCTCTTT AGTCTTAGTAGACGT TERM 3262 3572251 - 3572207 - R 86 -12.2 -3.54039 | opp_overlap 3572209 3572211, overlap 3572206 3572211 ATACTAAGCAAAAAG GCAAGGGGACATAACTCCTC TCTTG GAGGAGTCATGCCCCCTCTT TAGTCTTAGTAGACG TERM 3263 3572209 - 3572249 + r 100 -13.3 -3.95022 | opp_overlap 3572207 3572206 3572211, overlap 3572211 ACTAAGCAAAAAGGC AAGGGGACATAACTCCTCT CTT GGAGGAGTCATGCCCCCTC TTTAGTCTTAGTAGA TERM 3264 3572247 - 3572211 - R 100 -19.6 -3.48824 | opp_overlap 3572209 3572211, overlap 3572207 3572206 TAAGCAAAAAGGCAA GGGGACATAACTCCTC TCTTG GAGGAGTCATGCCCCC TCTTTAGTCTTAGTA TERM 3265 3572211 - 3572247 + r 100 -15.9 -3.56155 | opp_overlap 3572211 3572207 3572206, overlap 3572209 TAAGCAAAAAGGCAA GGGGACATAACTCCTCT CTT GGAGGAGTCATGCCCCC TCTTTAGTCTTAGTA Daro_3323 3573987 - 3572257 - | cytochrome c, class I:cytochrome d1, heme region TERM 3266 3572643 - 3572677 + g 73 -5.1 -4.62783 | gap 2, opp_overlap 3572627 3572656 CGCCCAGCCCCTTCA GCGTGCGGACAA--CCT TCC AGGCATTGTCCGGATGC TTTTTCGGATCGGTG TERM 3267 3574201 - 3574242 + r 100 -23.1 -4.08216 | opp_overlap 3574203 3574209, overlap 3574202 3574209 TTTTCTTTCCTGAAA AAGCAAAAGGCCCGACCGG CGAA CCGGTCGGGCCTTTTGCGC TTTTGCGAACGCTCG TERM 3268 3574202 - 3574241 + r 100 -26.6 -3.04715 | opp_overlap 3574203 3574209, overlap 3574201 3574209 TTTCTTTCCTGAAAA AGCAAAAGGCCCGACCGG CGAA CCGGTCGGGCCTTTTGCG CTTTTGCGAACGCTC TERM 3269 3574240 - 3574203 - R 100 -30.1 -4.56597 | opp_overlap 3574202 3574201 3574209, overlap 3574209 TTCTTTCCTGAAAAA GCAAAAGGCCCGACCGG CGAA CCGGTCGGGCCTTTTGC GCTTTTGCGAACGCT TERM 3270 3574234 - 3574209 - R 100 -21.9 -4.77757 | opp_overlap 3574202 3574201 3574209, overlap 3574203 CCTGAAAAAGCAAAA GGCCCGACCGG CGAA CCGGTCGGGCC TTTTGCGCTTTTGCG TERM 3271 3574209 - 3574234 + r 100 -21.9 -4.28049 | opp_overlap 3574209 3574203, overlap 3574202 3574201 CCTGAAAAAGCAAAA GGCCCGACCGG CGAA CCGGTCGGGCC TTTTGCGCTTTTGCG Daro_3324 3575341 - 3574262 - | phospho-2-dehydro-3-deoxyheptonate aldolase TERM 3272 3576168 - 3576149 - g 73 -4.2 -4.67904 | gap 1, overlap 3576151 CACGAACTGGAAAAA TTGCTGGGC GCC GCCC-GCGA ACATGGCGCCAGCCA Daro_3325 3575387 - 3576493 + | radical SAM family protein Daro_3326 3577283 - 3576522 - | hypothetical protein Daro_3327 3578029 - 3577409 - | cytochrome c, class I Daro_3328 3579500 - 3578055 - | microcin-processing peptidase 2 Daro_3329 3580320 - 3579511 - | Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase Daro_3330 3584240 - 3580317 - | hypothetical protein TERM 3273 3583674 - 3583689 + g 70 -3.2 -4.63218 | overlap 3583669 GACAATGGTGGCATC GCGGAT GCGG ATGCGC TTTTGTTCCAGCACC TERM 3274 3586267 - 3586250 - g 77 -7.7 -4.31737 | overlap 3586264 AAAACGATCAAGAAA CGGCATT GCGA AACGCCG AAGTTTGCGATCATC TERM 3275 3586576 - 3586602 + G 70 -10.1 -3.53811 | gap 1 CCGCGCCCGCTTCTG CGCCGG-CGACC CGGC GGTCGGCCAGCG TTTCGAGGAAATCCG TERM 3276 3586736 - 3586765 + G 82 -14.3 -3.21925 | opp_overlap 3586719 3586738 3586743 GAATTCGGGCTCAAG CACGACATCGGCG GGAT CGTCGATGTCGAG TTCATCGTCCAGTAT TERM 3277 3586763 - 3586738 - g 73 -13.3 -2.71011 | opp_overlap 3586736, overlap 3586719 3586743 ATTCGGGCTCAAGCA CGACATCGGCG GGAT CGTCGATGTCG AGTTCATCGTCCAGT TERM 3278 3587010 - 3587024 + G 80 -10 -4.07687 | opp_overlap 3587010 TTGCGGCTGTCGAAA CGCTCT GGG AGAGCG TTTTCAGCACCCGCT TERM 3279 3587024 - 3587010 - g 70 -10 -3.53012 | opp_overlap 3587010 TTGCGGCTGTCGAAA CGCTCT GGG AGAGCG TTTTCAGCACCCGCT Daro_3331 3584342 - 3587041 + | glutamate-ammonia ligase adenylyltransferase Daro_3332 3587651 - 3587049 - | hypothetical protein TERM 3280 3587771 - 3587795 + r 82 -12.9 -2.87132 | opp_overlap 3587740 3587739 3587776, overlap 3587776 CCTGGGCAGGCGCAA AAAAAGCCGCC TTG GGCGGCTTTTC TGTCTCGAAAACGAG TERM 3281 3587776 - 3587790 + r 100 -12.8 -4.60797 | opp_overlap 3587776, overlap 3587771 GCAGGCGCAAAAAAA GCCGCC TTG GGCGGC TTTTCTGTCTCGAAA TERM 3282 3587790 - 3587776 - R 100 -12.8 -5.42259 | opp_overlap 3587776 3587771 GCAGGCGCAAAAAAA GCCGCC TTG GGCGGC TTTTCTGTCTCGAAA TERM 3283 3587798 - 3587811 + r 81 -6.7 -4.61482 | TGGGCGGCTTTTCTG TCTCG AAAA CGAGA TTATTTTTTCAGCGA Daro_3333 3588237 - 3587812 - | large-conductance mechanosensitive channel TERM 3284 3588363 - 3588348 - R 81 -10.4 -3.86524 | ACAGTGCTTTACAAA GCCGCT CGGC AGCGGC CCGCAGGGTTTCCTC Daro_3334 3589488 - 3588331 - | putative aminotransferase TERM 3285 3589144 - 3589134 - G 70 -3.2 -4.58685 | overlap 3589140 AAACCGGCTCAAAAA CAAG CAC CTCG TCGCCAGGCCTGACG mtnA 3589537 - 3590625 + | methylthioribose-1-phosphate isomerase TERM 3286 3590675 - 3590719 + G 70 -10 -3.5511 | overlap 3590674 ATGCAGCCGGCCGGC CTCAACCGCGGCAC-CGCTGGC AAC GTCAGCGTGCGCAGTGG-TGAG TGTTTCTACATCACG Daro_3336 3590618 - 3591247 + | class II aldolase/adducin, N-terminal Daro_3337 3591244 - 3592194 + | cation efflux protein Daro_3338 3592956 - 3592213 - | YcgR TERM 3287 3592559 - 3592537 - G 70 -3.3 -4.58283 | gap 1, opp_overlap 3592538 3592539, overlap 3592538 3592539 CAAGCGGCCGAAAAA CTCCAGCGGA TTGA CCCGCGGG-G TTTCGACGCGAAAAT Daro_3339 3593807 - 3592953 - | 6-phosphogluconate dehydrogenase, NAD-binding TERM 3288 3593926 - 3593913 - R 72 -8.1 -3.93963 | AGGAGGAGCGACAAA GTCGG GCGC CCGAC CAGACGTGCCGGCAG Daro_3340 3594910 - 3594047 - | NADP oxidoreductase, coenzyme F420-dependent:6-phosphogluconate dehydrogenase, NAD-binding Daro_3341 3596939 - 3594972 - | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) Daro_3342 3597309 - 3597082 - | hypothetical protein Daro_3343 3600512 - 3597306 - | acriflavin resistance protein TERM 3289 3599052 - 3599025 - G 73 -9.1 -3.96148 | CGGCGTCACGATAAA GGCCACGGCCA GCGAAA TGGCCATGCCC ATCGACGAGTTGATC Daro_3344 3601517 - 3600516 - | secretion protein HlyD TERM 3290 3600694 - 3600725 + g 78 -6.5 -4.59773 | opp_overlap 3600677, overlap 3600694 3600695 3600697 GCCGCTACTTCGCCA C-GGCGGAGCACGGC GACA GCCG-GCACCGTCAG TTTTTCCGCCTGACC Daro_3345 3602839 - 3601586 - | major facilitator transporter TERM 3291 3601946 - 3601909 - G 70 -4.1 -4.63527 | gap 1, overlap 3601910 3601919 3601922 CCATCAGGGCAAAAA GTGC-ATACGACAACGCC AGC GGCATCGTCGTGCAGGAC AGCCAGATCAGCCAG TERM 3292 3602196 - 3602207 + g 74 -5.8 -4.56597 | ACCGCCACCGCCGGC CAGG TATC CCTG TTTTTGACCACGGCC Daro_3346 3603225 - 3602923 - | cytochrome c, class I TERM 3293 3603089 - 3603107 + g 74 -3.1 -4.79352 | TTGCTCGCAATGTCC TTGTAGG CCGGA CCGACAA TTTTCTTGTCGATGG Daro_3347 3604326 - 3603268 - | TrkA-N Daro_3348 3604820 - 3604323 - | hypothetical protein TERM 3294 3604927 - 3604914 - R 76 -3.7 -4.99435 | GGCAACAAGGAAAAA GCCGG GCAA CGGGC CTTAGGGGGGTGAGG Daro_3349 3605309 - 3604929 - | response regulator receiver Daro_3350 3608077 - 3605306 - | response regulator receiver:ATP-binding region, ATPase-like:histidine kinase, HAMP region:histidine kinase A, N-terminal:Hpt TERM 3295 3606543 - 3606557 + g 84 -11.4 -4.07568 | ACACGCGCCCCGGTT GCAGGC AGG GCCTGC TTTTCCGGCGACGCC Daro_3351 3608463 - 3608074 - | hypothetical protein TERM 3296 3608422 - 3608396 - G 74 -6.5 -4.35483 | gap 1, overlap 3608376 3608397 TGCCACCATAACAAA GGCTGGCCGAGC ATAC GCTCGACC-GCA CCCATCACGTCAAAG Daro_3352 3608606 - 3609310 + | response regulator receiver:transcriptional regulatory protein, C-terminal TERM 3297 3609334 - 3609353 + F 100 -12.2 -5.52384 | GAATTTTGTGTCTGA GCCATGCT TGCG AGCATGGC TTTTTTTCGTCCGCG Daro_3353 3609510 - 3610184 + | hypothetical protein TERM 3298 3610350 - 3610323 - g 78 -10.6 -3.99374 | gap 1 GGCCATCAAGAACAA CGACAACGCC-GC CTC GCTGGCGCTATCG ATGTCACAACTGGAC TERM 3299 3610490 - 3610472 - g 83 -4.4 -5.1101 | opp_overlap 3610482 3610485 CGATGATCGAAAAAA CCAGCCCC CCC GATGCCGG CAATGTCCCGGCGTG TERM 3300 3611467 - 3611490 + G 74 -11.6 -3.43071 | CGTCTGATCGAGTTC CCGGTCGCCG GCAG CGGCGGCCAG TTGCTTCATCTCGAA Daro_3354 3610195 - 3612108 + | diguanylate cyclase/phosphodiesterase TERM 3301 3612383 - 3612367 - g 90 -15.1 -3.6715 | opp_overlap 3612366 3612364 3612360 3612367 GCAGCGAATGGGAAA CCCCGGC CAC GCCGGGG GTCTTCGATTTCAGC TERM 3302 3612367 - 3612383 + G 76 -15.1 -2.51888 | opp_overlap 3612367, overlap 3612366 3612364 3612360 GCAGCGAATGGGAAA CCCCGGC CAC GCCGGGG GTCTTCGATTTCAGC TERM 3303 3613273 - 3613248 - g 80 -3.9 -5.0538 | CGTCATGCCAAAAAA GCGCGAAAGCT GGCC AACCGTCACGC CGAACTCAGCCCCGC Daro_3355 3612114 - 3613577 + | adenylate cyclase TERM 3304 3613709 - 3613734 + T 78 -8.9 -4.27192 | opp_overlap 3613713, overlap 3613712 3613713 3613732 TCAGACAAGAACAAA AAAACCGGGGC TTCT GCCCCGGCTTC TTTTAATAGGGGTTT TERM 3305 3613712 - 3613731 + T 91 -10.6 -4.25256 | opp_overlap 3613713, overlap 3613709 3613713 GACAAGAACAAAAAA ACCGGGGC TTCT GCCCCGGC TTCTTTTAATAGGGG TERM 3306 3613713 - 3613730 + T 89 -14.1 -3.14672 | opp_overlap 3613713, overlap 3613712 3613709 ACAAGAACAAAAAAA CCGGGGC TTCT GCCCCGG CTTCTTTTAATAGGG TERM 3307 3613730 - 3613713 - T 100 -14.1 -5.97979 | opp_overlap 3613713 3613712 3613709 ACAAGAACAAAAAAA CCGGGGC TTCT GCCCCGG CTTCTTTTAATAGGG TERM 3308 3613741 - 3613757 + T 72 -10.9 -3.08738 | opp_overlap 3613743, overlap 3613732 3613743 CCCGGCTTCTTTTAA TAGGGGT TTG ACCCCTA TTAGGTACAATTCTT TERM 3309 3613762 - 3613782 + T 78 -9.1 -3.96624 | overlap 3613732 TTTGACCCCTATTAG GTACAATTC TTG GGATTGTAC TTTGTAGTGAGAGTG Daro_3356 3614171 - 3613758 - | fimbrial protein pilin: general secretion pathway protein H TERM 3310 3614007 - 3614017 + g 70 -4.6 -4.56597 | GTTAAGAACAGCATC CTGG AAT CCGG TTTTTGCGGCAGCAA TERM 3311 3614144 - 3614154 + g 71 -6.8 -4.28254 | opp_overlap 3614144 TCATCAGTTCAATCA GGGT AAA ACCC TTTTGCATGTTCGAC TERM 3312 3614293 - 3614305 + r 70 -5.5 -4.3739 | opp_overlap 3614280, overlap 3614274 ACCCCTTGTCATTCA TGGGC TTG GCCTA TTTTGTCGGCCAATG Daro_3357 3616046 - 3614460 - | hypothetical protein TERM 3313 3616128 - 3616103 - R 71 -3.3 -4.78149 | GTCAGAACTCAAAAA CCTGATCAT TCTGCAAC ATGCTCAGG TCAAAATCCCCCAGG Daro_3358 3616856 - 3616089 - | Beta-lactamase-like Daro_3359 3617753 - 3617049 - | forkhead-associated Daro_3360 3618593 - 3617769 - | protein phosphatase 2C-like Daro_3361 3619753 - 3618800 - | ornithine cyclodeaminase Daro_3362 3620467 - 3619766 - | integral membrane protein TerC TERM 3314 3620488 - 3620506 + r 85 -7.3 -4.87291 | opp_overlap 3620488 CCAAGGCGAAAAAAA GGCGGAC ACGCG GCCCGCC TTTTTGGTTGAGCTA TERM 3315 3620506 - 3620488 - R 100 -9.5 -5.47399 | opp_overlap 3620488 CCAAGGCGAAAAAAA GGCGGAC ACGCG GCCCGCC TTTTTGGTTGAGCTA Daro_3363 3621425 - 3620532 - | succinyl-CoA synthetase subunit alpha sucC 3622597 - 3621437 - | succinyl-CoA synthetase subunit beta Daro_3365 3624092 - 3622734 - | multi anti extrusion protein MatE TERM 3316 3623607 - 3623592 - G 76 -5.4 -4.69622 | ACACAAGCTGAAAAA GCCGAT ACCC ATCAGC ACCCGCGGCTTGCCC TERM 3317 3624503 - 3624489 - g 74 -5.6 -4.56597 | overlap 3624491 GTGCCCCGCGAAAAA GTGGTC CGC GTCCAC GCCTCGAGCGGCACG Daro_3366 3624237 - 3625532 + | phenylacetate-CoA ligase TERM 3318 3625619 - 3625649 + F 93 -9.8 -4.46233 | opp_overlap 3625622, overlap 3625622 AGCCGGCAGAAAATA AAATCCCAAACGAA TGA TTCGCTTGGGATTA TTTATTTGGCATTAA TERM 3319 3625646 - 3625622 - f 100 -13.7 -5.18371 | opp_overlap 3625619 3625622 CGGCAGAAAATAAAA TCCCAAACGAA TGA TTCGCTTGGGA TTATTTATTTGGCAT TERM 3320 3625622 - 3625646 + F 95 -11.5 -4.33281 | opp_overlap 3625622, overlap 3625619 CGGCAGAAAATAAAA TCCCAAACGAA TGA TTCGCTTGGGA TTATTTATTTGGCAT TERM 3321 3625714 - 3625680 - f 100 -20.2 -3.35996 | opp_overlap 3625680 GATTGCTATGGATAA TTTAGCGCACCCAGCA ATA CGCTAGGTGCGCTAAA TCCTCTGCAAAAAAC TERM 3322 3625680 - 3625714 + F 100 -17.3 -2.62184 | opp_overlap 3625680 GATTGCTATGGATAA TTTAGCGCACCCAGC AATAC GCTAGGTGCGCTAAA TCCTCTGCAAAAAAC Daro_3367 3625830 - 3626564 + | hypothetical protein TERM 3323 3626640 - 3626678 + T 70 -11 -2.74144 | gap 1, opp_overlap 3626661 3626671, overlap 3626639 3626674 TCCGACGCCCCCTGA AGCCCCGCTCC-TTGCC AGAAAC GGCAACGGAGCGGCGCG GTTTGCCACTAACGA Daro_3368 3627388 - 3626687 - | fumarylacetoacetate (FAA) hydrolase TERM 3324 3627354 - 3627327 - G 89 -12.8 -4.13767 | gap 1, overlap 3627328 CGGCGTACTGGAAAA CGCTGCTCGGTAC CGA GTACCG-GCAGCA CAGGAACTGCGTGGG TERM 3325 3627353 - 3627328 - G 76 -14.1 -3.08046 | gap 1, overlap 3627327 GGCGTACTGGAAAAC GCTGCTCGGTAC CGA GTACCG-GCAGC ACAGGAACTGCGTGG Daro_3369 3627475 - 3629271 + | peptidoglycan-binding LysM Daro_3370 3630024 - 3629278 - | hypothetical protein TERM 3326 3629685 - 3629657 - G 79 -12.4 -3.53012 | overlap 3629674 3629675 3629683 TCCTGTTCGCCGAAA CGCCCCTCGGGC AAAAA GCCCAAAAGGCG CGCCAATCGGGCGTT TERM 3327 3629684 - 3629674 - G 70 -4.6 -4.56597 | overlap 3629657 3629675 3629683 CCCCTCGGGCAAAAA GCCC AAA AGGC GCGCCAATCGGGCGT TERM 3328 3630539 - 3630521 - g 74 -6.6 -4.42062 | overlap 3630522 CATCCTGCAAATAAA GGCCGACA AGC TGCCGGCG ATCACCTTCGGCCAG Daro_3371 3630039 - 3631190 + | peptidase S1 and S6, chymotrypsin/Hap:PDZ/DHR/GLGF Daro_3372 3631194 - 3632000 + | glutamine amidotransferase, class-II TERM 3329 3631978 - 3631997 + T 70 -10.7 -2.76263 | overlap 3631974 TGCCGACGCGTCCAG GGCCGGT CAAAAA ACCGGCC TGATTCGCTGGTCAG Daro_3373 3632836 - 3632009 - | Sec-independent protein translocase TatC Daro_3374 3633195 - 3632833 - | Sec-independent protein translocase TatB tatA 3633471 - 3633241 - | twin argininte translocase protein A TERM 3330 3633299 - 3633322 + g 76 -12.4 -3.3344 | overlap 3633286 CCGCCAACCTGCTGG GTCGGCTGAG CCTC CTCGGCCGGC TTGTCGGCATTGGCT Daro_3376 3633832 - 3633482 - | histidine triad (HIT) protein Daro_3377 3634155 - 3633829 - | phosphoribosyl-ATP pyrophosphatase Daro_3378 3634550 - 3634152 - | phosphoribosyl-AMP cyclohydrolase Daro_3379 3635315 - 3634557 - | imidazole glycerol phosphate synthase subunit HisF Daro_3380 3636055 - 3635315 - | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase TERM 3331 3636001 - 3635977 - G 93 -7.9 -5.0538 | gap 1, opp_overlap 3635980 GGCTATCGGAAAAAA CAGTGGCCTG TTCCAT CAGGCC-CTG CTTCAGACGGACGCA hisH 3636737 - 3636090 - | imidazole glycerol phosphate synthase subunit HisH Daro_3382 3637321 - 3636734 - | imidazoleglycerol-phosphate dehydratase TERM 3332 3636954 - 3636939 - G 70 -4.6 -4.45399 | opp_overlap 3636947 AGATCAACATCAAAA GTCCCG ATCA CGGCAC GCGTGAATTCGACAT Daro_3383 3637400 - 3638470 + | histidinol-phosphate aminotransferase Daro_3384 3638477 - 3638683 + | hypothetical protein TERM 3333 3638828 - 3638840 + T 70 -10.5 -2.78384 | GGGGCATTCATAGCT GGGGG TCG CCCCC TCTGATGCAAGGCGA Daro_3385 3639603 - 3639085 - | chromate transporter Daro_3386 3640163 - 3639600 - | chromate transporter TERM 3334 3639897 - 3639879 - G 84 -9.5 -4.54323 | AAGCACAATAACAAA CGGCCCG GCGAG CAGGCCG ACCGGCGCAACGATG TERM 3335 3640115 - 3640134 + g 73 -10.6 -3.60792 | opp_overlap 3640115 3640116, overlap 3640116 AGAAGCCCCAAAAAA GCGCCCGG AGGT CCGGGCGA TTTCGGGATTCGGGA TERM 3336 3640134 - 3640115 - G 100 -10.6 -5.06103 | opp_overlap 3640115 3640116, overlap 3640116 AGAAGCCCCAAAAAA GCGCCCGG AGGT CCGGGCGA TTTCGGGATTCGGGA TERM 3337 3640116 - 3640133 + g 73 -14.1 -2.76261 | opp_overlap 3640115 3640116, overlap 3640115 GAAGCCCCAAAAAAG CGCCCGG AGGT CCGGGCG ATTTCGGGATTCGGG TERM 3338 3640133 - 3640116 - G 88 -14.1 -3.62577 | opp_overlap 3640116 3640115, overlap 3640115 GAAGCCCCAAAAAAG CGCCCGG AGGT CCGGGCG ATTTCGGGATTCGGG Daro_3387 3641505 - 3640204 - | histidinol dehydrogenase hisG 3642150 - 3641506 - | ATP phosphoribosyltransferase catalytic subunit TERM 3339 3641808 - 3641824 + g 74 -6.5 -4.30576 | CGACCTTGAGGCGAT TGCCCTG GCG CACGGCA TTTTCGTAATCGAAG TERM 3340 3642077 - 3642101 + g 71 -9.2 -3.73224 | gap 1, opp_overlap 3642077, overlap 3642077 TCCTTGGGAACGATA CCC-GCCGCGG CCAG CAGCGGCAGGG TTTCGTCAAAAATGC TERM 3341 3642180 - 3642169 - R 77 -7.2 -4.57073 | opp_overlap 3642168 3642169 CAGGCTTGCTAAAAA GGCG AAAG CGCC ATTTTAGCAGACCCC Daro_3389 3643477 - 3642197 - | TRAP dicarboxylate transporter, DctM subunit TERM 3342 3642633 - 3642622 - G 81 -5.8 -4.8622 | overlap 3642623 3642624 TGCCCCAAGCAAAAA CGCT GGCC AGCG CCACGACGGTCAGGA Daro_3390 3643962 - 3643477 - | tripartite ATP-independent periplasmic transporter DctQ TERM 3343 3643926 - 3643945 + g 80 -10.7 -4.02817 | TGGCGAGCGTCAGCT TGCCGCC TGAAGC GGCGGCA TTATTGTTATCGGAC Daro_3391 3644989 - 3643970 - | TRAP dicarboxylate transporter- DctP subunit TERM 3344 3645084 - 3645099 + r 93 -11.8 -4.18018 | opp_overlap 3645084 CGTAAACGCAAAAAA GCCCGG CTAG CCGGGC TTTTCGATACAGGCG TERM 3345 3645099 - 3645084 - R 100 -11.8 -5.22039 | opp_overlap 3645084 CGTAAACGCAAAAAA GCCCGG CTAG CCGGGC TTTTCGATACAGGCG Daro_3392 3645331 - 3645125 - | cold-shock DNA-binding protein family protein Daro_3393 3646801 - 3645548 - | UDP-N-acetylglucosamine 1-carboxyvinyltransferase Daro_3394 3647039 - 3646794 - | BolA-like protein TERM 3346 3646858 - 3646868 + g 72 -2.4 -4.86621 | AGGGCGTGCAATTCC CCGG TAT CCAG TTTTTCCTTCAGGGT Daro_3395 3647794 - 3647042 - | hypothetical protein Daro_3396 3648510 - 3647791 - | ABC transporter related TERM 3347 3648262 - 3648252 - G 71 -6.8 -4.22948 | overlap 3648255 AAAACGGATCGAAAA CCAG TTC CTGG GGCACCACGCCCAGC Daro_3397 3648803 - 3648522 - | NTP binding protein TERM 3348 3648741 - 3648721 - G 88 -13.3 -3.62849 | opp_overlap 3648719, overlap 3648715 GCCAGCAAAGCAGAA CGGCCTGCT TCA AGCAGACCG CGTGCATTGGCCATA Daro_3398 3649414 - 3648800 - | toluene tolerance Daro_3399 3650155 - 3649430 - | VacJ-like lipoprotein Daro_3400 3650622 - 3650152 - | hypothetical protein TERM 3349 3650607 - 3650590 - G 74 -3.3 -4.73388 | overlap 3650591 3650592 AAGTGCCACGAAAAA TCCGACC CACA GGTCGAG TACGGTACGGTTCAT Daro_3401 3651413 - 3650622 - | hypothetical protein TERM 3350 3650939 - 3650927 - G 80 -3.4 -5.02074 | CCATGGCGGAAAAAA TTGC AGCCA GCAA CGGCATCGAAATGAC Daro_3402 3652218 - 3651406 - | ABC transporter related TERM 3351 3651974 - 3651940 - G 78 -10.7 -3.9122 | CATGTCGGTAAACAA GGCGCCGAACTGAAA AAGCA TCCCCATTCGGCGCC GCAGGCGATACAACT Daro_3403 3652257 - 3653741 + | helix-turn-helix, Fis-type Daro_3404 3653738 - 3655117 + | ATPas TERM 3352 3655221 - 3655234 + F 75 -6.7 -4.36914 | opp_overlap 3655220 3655221 CAGACAAGGCATAAC CCGAT GAAA ATCGG TTTTATCAGCGCAAC TERM 3353 3655848 - 3655838 - g 74 -3.2 -4.83169 | ATCCCTCGAGAAAAA CGTC AAG GACA TCCTGCGCGAAACGG Daro_3405 3655224 - 3657008 + | type II and III secretion system protein Daro_3406 3657018 - 3658271 + | TPR repeat-containing protein Daro_3407 3658279 - 3659985 + | type II secretion system protein E Daro_3408 3659988 - 3661187 + | type II secretion system protein TERM 3354 3661922 - 3661901 - g 85 -9.3 -4.65895 | CCGGCCATCGAAAAA GCCTGCCCC GACC GGGGCCAGC TCAGCTTTACCATTA Daro_3409 3661184 - 3662695 + | hypothetical protein Daro_3410 3662692 - 3663282 + | hypothetical protein Daro_3411 3663246 - 3663650 + | hypothetical protein Daro_3412 3663653 - 3664582 + | hypothetical protein Daro_3413 3664573 - 3665307 + | general secretion pathway protein H Daro_3414 3665390 - 3666685 + | adenylyl cyclase class-3/4/guanylyl cyclase Daro_3415 3668345 - 3666663 - | ATP-binding region, ATPase-like TERM 3355 3667658 - 3667648 - G 81 -8.2 -4.58395 | opp_overlap 3667647 CCGACCCCGGAAAAA CCGC CTC GCGG ATTCCATGCCCAGGC Daro_3416 3668475 - 3669137 + | N-terminal methylation site TERM 3356 3669190 - 3669146 - T 95 -12.4 -4.13945 | gap 1, opp_overlap 3669152 3669160, overlap 3669149 3669160 ATTCTGATGGCAAAA TG-ACCATTGAAAAAGCCCGC TTCG GCGGGCTTTTTCAATTCTGCA GCAGCCTTTCCTCGG TERM 3357 3669186 - 3669149 - T 87 -14.3 -3.09831 | opp_overlap 3669152 3669160, overlap 3669146 3669160 CTGATGGCAAAATGA CCATTGAAAAAGCCCGC TTCG GCGGGCTTTTTCAATTC TGCAGCAGCCTTTCC TERM 3358 3669152 - 3669183 + T 100 -20.4 -3.29043 | opp_overlap 3669149 3669146 3669160, overlap 3669160 ATGGCAAAATGACCA TTGAAAAAGCCCGC TTCG GCGGGCTTTTTCAA TTCTGCAGCAGCCTT TERM 3359 3669160 - 3669175 + T 100 -11.8 -4.78149 | opp_overlap 3669160 3669149 3669146, overlap 3669152 ATGACCATTGAAAAA GCCCGC TTCG GCGGGC TTTTTCAATTCTGCA TERM 3360 3669175 - 3669160 - T 100 -11.8 -4.68994 | opp_overlap 3669152 3669160, overlap 3669149 3669146 ATGACCATTGAAAAA GCCCGC TTCG GCGGGC TTTTTCAATTCTGCA Daro_3417 3671138 - 3669180 - | potassium efflux system protein TERM 3361 3669578 - 3669544 - G 72 -13.5 -2.53715 | overlap 3669543 CCGACCAGTACCAAT GCGTGGGAAGCCAGC ATCAG GCTGGCCTCCAGCGC CTCCGGCACGACTTC TERM 3362 3669909 - 3669883 - G 82 -8.7 -4.36914 | opp_overlap 3669884 3669885 TCCTGCGCCAGAAAA CGGGCGAGATA CTGGC CATTTCGCCCG AAACCGCAAAGAATG Daro_3418 3671192 - 3672190 + | KpsF/GutQ Daro_3419 3672190 - 3672717 + | HAD family phosphatase KdsC TERM 3363 3672837 - 3672816 - g 81 -5.8 -4.8622 | TCCGGCAACGAAAAA CATGACGG CAAGTT CCGCCACG ACCCCGATGCCATTG Daro_3420 3672714 - 3673295 + | hypothetical protein Daro_3421 3673292 - 3673894 + | OstA-like protein TERM 3364 3673953 - 3673934 - f 79 -10 -3.79021 | overlap 3673924 CAAAACCGCAGCAAA TCAGGCGC CGCA GCACCTGA CAAGCACATGATTTT TERM 3365 3673983 - 3674003 + F 80 -11.3 -3.38991 | opp_overlap 3673982, overlap 3673980 TCATGGCTTAATTAT TTTTTGTGC ACT GCACAAAAA TATTGTTGACAACAT Daro_3422 3674129 - 3674692 + | phasin TERM 3366 3674707 - 3674728 + F 100 -15.9 -4.00042 | ATTAGCCATACCCCA TACCCCCGC CTCG GCGGGGGTA TTGTTTCATCCGCCG Daro_3423 3674770 - 3675363 + | phasin TERM 3367 3675423 - 3675407 - T 100 -10.1 -5.24129 | opp_overlap 3675407 TCGGCCCAGAAAAAA CCGCGAC AAA ATCGCGG TTTTTTTACGCCTGC TERM 3368 3675407 - 3675423 + T 100 -9.4 -5.42259 | opp_overlap 3675407 TCGGCCCAGAAAAAA CCGCGA CAAAA TCGCGG TTTTTTTACGCCTGC Daro_3424 3676225 - 3675461 - | molybdopterin binding domain-containing protein Daro_3425 3676956 - 3676222 - | hypothetical protein Daro_3426 3680938 - 3676949 - | ATP-dependent helicase HrpA TERM 3369 3678157 - 3678167 + g 74 -6.8 -4.4078 | GCAGCGTCTTGATCA GCTG CAC CAGC TTTTCCTTCAGCAGC TERM 3370 3679376 - 3679423 + g 80 -11.8 -3.73072 | CGCCGCGACCAGCAT GCGGCCGATGCGCGGGTCGAGC GGCA GCTTGGCCAGCGCGTCGCCAAC TTTGGTCAGACGATT TERM 3371 3680886 - 3680896 + g 83 -2.4 -5.19261 | overlap 3680877 GTTTCGCGCCCTTGT CCGG CGT CCTG TTTTTTCATAAGTTT Daro_3427 3681899 - 3680916 - | integron integrase TERM 3372 3681065 - 3681117 + g 70 -4 -4.65895 | gap 2, opp_overlap 3681076, overlap 3681065 3681067 GGGTGGCAAACGAAT GGCG--GAAGGTATGCGGCGTCGCCA GCT TGGCGATGCCGCTCGCCTGAAGTGCC TTTTTGACTGCCCGC TERM 3373 3681104 - 3681076 - G 76 -14.5 -2.53213 | opp_overlap 3681067 3681065 3681065 GAATGGCGGAAGGTA TGCGGCGTCGCCA GCT TGGCGATGCCGCT CGCCTGAAGTGCCTT TERM 3374 3681998 - 3681975 - H 89 -14 -3.18264 | opp_overlap 3681980 CCCCCCATGCAGGAA GTAGACACCT GCAA AGGTGTCTAC TGAACGTTAGAACTC TERM 3375 3682315 - 3682299 - g 83 -2.9 -5.28481 | GAGGTAACGAAAAAA GCAAACA AAG TGGTCGC CGTAGCAGTTGTCGG Daro_3428 3682014 - 3682460 + | molecular chaperone-like protein Daro_3429 3682555 - 3682947 + | hypothetical protein TERM 3376 3683018 - 3682968 - f 73 -11.3 -2.76815 | gap 2, overlap 3682967 ACGCCGCCCAACAAT CCGCTCCAGCCGACCGTCAAAAAGC TGC GCTTTTTGCCG-TCGGCT-GAGCTT CCACGTTAGCGATAT Daro_3430 3683032 - 3683850 + | hypothetical protein TERM 3377 3683900 - 3683870 - f 100 -16.9 -3.06133 | gap 1, opp_overlap 3683870, overlap 3683852 TAACCCGGCAGTCAA CCGGACCTGCGCGA AAAG CCGCGCAGG-CCGG TTACTTCTACGTTAG TERM 3378 3683870 - 3683900 + F 100 -16.2 -3.47403 | gap 1, opp_overlap 3683852 3683870 TAACCCGGCAGTCAA CCGGACCTGCGCG AAAAGC CGCGCAGG-CCGG TTACTTCTACGTTAG TERM 3379 3684176 - 3684135 - g 84 -8.8 -4.4715 | gap 1 TTCGAATGTAGAAAA GGCGTTGGCGCTTATGCAC TCTTC GTACGCAAGCAC-AACGCC GAAGCCAACCGAGGA Daro_3431 3683926 - 3684423 + | hypothetical protein TERM 3380 3684454 - 3684487 + F 100 -15.3 -3.1479 | gap 1, opp_overlap 3684474 CGCTCCCTTCGGTCG CTGGACGCTGCGCGAT AAA ACCGCGCAGCG-CCGG TTAGCTCTACGTTAT Daro_3432 3684513 - 3685133 + | hypothetical protein TERM 3381 3685445 - 3685435 - g 71 -6.8 -4.21922 | opp_overlap 3685435 TCAGTCAAAACTAAA TGCG AAA CGCA TCACTTATTCAAGCC Daro_3433 3685196 - 3685612 + | signal peptide protein TERM 3382 3685650 - 3685683 + T 89 -13.9 -3.14468 | gap 1, opp_overlap 3685668 3685669 CGCTCCCTTCGGTCG CTGGACGCTGCGCG ATAAGGC CGCGCAGCG-CCGG TTAGCTCTACTACAA Daro_3434 3687066 - 3686041 - | transposase IS116/IS110/IS902 TERM 3383 3686931 - 3686970 + g 71 -5.7 -4.30014 | gap 1, overlap 3686930 3686929 3686966 CGATCAGGCAGGGCG GTAGCTGGGCGACCATTT CCAGC AATTGGCCGCGC-GCTAC TTTTGGCTTGATAAA TERM 3384 3686998 - 3686988 - G 85 -6.8 -4.82901 | overlap 3686989 3686990 TTGGCTTGATAAAAA TGGC TTT GCCA TACTGGTCAACACCA Daro_3435 3687188 - 3687727 + | hypothetical protein TERM 3385 3687756 - 3687779 + F 87 -13.8 -3.06312 | TTCGCCCTTCGGGCT GGGACTGCGC TAAA GCGCAGCCCC TTACCTAAAACGTTT Daro_3436 3687809 - 3688393 + | hypothetical protein Daro_3437 3688476 - 3688982 + | GCN5-related N-acetyltransferase Daro_3438 3689078 - 3689473 + | glyoxalase/bleomycin resistance protein/dioxygenase Daro_3439 3689575 - 3690006 + | GCN5-related N-acetyltransferase TERM 3386 3690050 - 3690070 + T 76 -11.1 -3.27525 | opp_overlap 3690050, overlap 3690045 CTGGTGAAACAAAAA CGCCGCC CGGATGA GGCGGCG TTGAGTTTGGGCAAG TERM 3387 3690070 - 3690050 - T 100 -11.8 -5.27335 | opp_overlap 3690050 3690045 CTGGTGAAACAAAAA CGCCGCCC GGATG AGGCGGCG TTGAGTTTGGGCAAG Daro_3440 3690344 - 3690093 - | hypothetical protein Daro_3441 3690581 - 3691027 + | hypothetical protein TERM 3388 3691526 - 3691548 + G 100 -11.2 -5.28176 | GCGATCGAACCCCTG CTGGCCAGCC TCG GCCTGGCCGG TTTTTTGTGGCTGGC Daro_3442 3691088 - 3691705 + | HylII Daro_3443 3691748 - 3692368 + | cold-shock protein, DNA-binding:protein of unknown function DUF1294 Daro_3444 3692391 - 3693215 + | LipQ Daro_3445 3696599 - 3693315 - | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) TERM 3389 3696306 - 3696292 - G 72 -2.8 -4.85177 | overlap 3696303 AAACCATAGGAAAAA TGCC GAATCCA GGCA TGCAGACGCTCCCGA Daro_3446 3697073 - 3696666 - | camphor resistance protein CrcB Daro_3447 3697142 - 3698947 + | glutaminyl-tRNA synthetase Daro_3448 3698953 - 3699177 + | hypothetical protein TERM 3390 3699374 - 3699389 + G 91 -6.1 -5.32944 | GGTCGCTCCGGAAGG GTCGC AGGTTC GCGAC TTTTTTGATTATCCG Daro_3449 3699180 - 3700349 + | N6 adenine-specific DNA methyltransferase, N12 class pyrF 3700346 - 3701158 + | orotidine 5'-phosphate decarboxylase TERM 3391 3701706 - 3701684 - g 71 -7.6 -4.12188 | opp_overlap 3701684, overlap 3701664 CCACCACGTGCAAAA CCTGCTCGGC ATT GCCGACAAGG TTCATCAAGCCAGGC Daro_3451 3701169 - 3702029 + | hypothetical protein Daro_3452 3702072 - 3702581 + | suppressor for copper-sensitivity D, putative TERM 3392 3702973 - 3702958 - g 76 -5.4 -4.64676 | TGAGCGCGAACAAAA GATCAC CGAG GCGATC AAGAAACATTTTGCC TERM 3393 3703323 - 3703277 - g 78 -2.1 -5.04385 | overlap 3703279 CAGACGGTCAAAAAA GGGGAAGCG-CTCGGCGCCGTCG GCT CGACCG-GACGAGCCACCGGCCC GCATCTGCACTGGGC Daro_3453 3702578 - 3703393 + | peptidase M23B TERM 3394 3703540 - 3703530 - g 71 -8.2 -4.05788 | overlap 3703531 TTTCTGCAAATCAAA GGGC CAT GCCC GGCACTGGAATGGTC Daro_3454 3703395 - 3703712 + | hypothetical protein Daro_3455 3704056 - 3703703 - | endoribonuclease L-PSP TERM 3395 3704107 - 3704074 - R 93 -8.9 -5.055 | gap 1, opp_overlap 3704080, overlap 3704075 3704076 TCAATTCCCAAAAAA CGTGAAGCCCATGCGT TTC AGGCATGGGCTTCG-G TTACTGCAACCCTGA TERM 3396 3704107 - 3704075 - R 73 -9.1 -3.62577 | opp_overlap 3704080, overlap 3704074 3704076 CAATTCCCAAAAAAC GTGAAGCCCATGCGT TTC AGGCATGGGCTTCGG TTACTGCAACCCTGA TERM 3397 3704106 - 3704076 - R 77 -12.6 -2.76823 | opp_overlap 3704080, overlap 3704074 3704075 AATTCCCAAAAAACG TGAAGCCCATGCGT TTC AGGCATGGGCTTCG GTTACTGCAACCCTG TERM 3398 3704080 - 3704102 + r 77 -12 -3.20723 | opp_overlap 3704076 3704074 3704075 CCCAAAAAACGTGAA GCCCATGCGT TTC AGGCATGGGC TTCGGTTACTGCAAC TERM 3399 3704339 - 3704354 + r 71 -9 -3.53012 | CCTATAGATCACGTT GGTACC GGGC GGTACC TTTGACACAGGAACG Daro_3456 3704728 - 3704318 - | hypothetical protein Daro_3457 3705987 - 3704740 - | hypothetical protein TERM 3400 3705408 - 3705397 - G 70 -3.6 -4.59773 | opp_overlap 3705396 GTCGATCGGCAAAAA CCAG CTCC CCGG CGAGTTGGCATTATC Daro_3458 3707116 - 3706019 - | response regulator receiver Daro_3459 3710280 - 3707113 - | response regulator receiver:ATP-binding region, ATPase-like:histidine kinase, HAMP region:histidine kinase A, N-terminal:Hpt TERM 3401 3711063 - 3711079 + G 71 -7.2 -4.18494 | opp_overlap 3711063 3711064, overlap 3711052 3711064 TGGGGCCACGAGCAA TCGGGC TGGTT GCCCGG TTTTCGCTAGGAATC Daro_3460 3710502 - 3711089 + | hypothetical protein Daro_3461 3711098 - 3712252 + | secretion protein HlyD Daro_3462 3712257 - 3712943 + | ABC transporter related TERM 3402 3714038 - 3714065 + G 73 -4.6 -4.62904 | overlap 3714040 CGGCTACCTGCTCGG CCAGCTCGGCGC CTTC GCGCTGCGCCAG TTTTTCCCGGTCTTT Daro_3463 3713004 - 3714212 + | hypothetical protein TERM 3403 3714251 - 3714232 - T 88 -12.1 -3.63627 | CGCCCAGATGCGAAA GGCCGCC TTTTCC GGCGGCC TGCGTACTACGTACT Daro_3464 3714716 - 3714303 - | hypothetical protein Daro_3465 3715632 - 3714745 - | hypothetical protein Daro_3466 3715813 - 3717012 + | hypothetical protein Daro_3467 3717091 - 3717528 + | MaoC-like dehydratase TERM 3404 3717547 - 3717576 + T 90 -15.1 -2.71924 | opp_overlap 3717552, overlap 3717552 CGAGTTGCTGCAAAT AAAAACGCCGGCA AGAA TGCCGGCGTTTTG CTTTCCAGGGGAATC TERM 3405 3717571 - 3717552 - T 100 -15 -5.27335 | opp_overlap 3717552 3717547 TGCTGCAAATAAAAA CGCCGGCA AGAA TGCCGGCG TTTTGCTTTCCAGGG TERM 3406 3717552 - 3717571 + T 100 -15 -4.54727 | opp_overlap 3717552, overlap 3717547 TGCTGCAAATAAAAA CGCCGGCA AGAA TGCCGGCG TTTTGCTTTCCAGGG Daro_3468 3718748 - 3717609 - | pseudouridine synthase, Rsu TERM 3407 3718364 - 3718325 - G 77 -12 -3.5627 | gap 1, opp_overlap 3718355 ACATCACCTTGGAAA GCCG-GACGCCTTCCGGGC TTG GCCCAGGCGGCTTCGCGGC CACCGCGGGGGTTCG Daro_3469 3719089 - 3718745 - | peptidylprolyl isomerase, FKBP-type TERM 3408 3719175 - 3719190 + H 82 -3.2 -5.25799 | overlap 3719160 TTGCGTATAATGCGC GGTTCT TTGT AGCACC TTTTTGTATTGTTTT TERM 3409 3719267 - 3719237 - g 74 -3.9 -4.83169 | gap 1 ATGCGGTCATAAAAA CCGGCGGCAA-GCA GTAT CGCGTTTCCGCTGG TCAAAAACTTAAAGT rplU 3719218 - 3719529 + | 50S ribosomal protein L21 rpmA 3719551 - 3719814 + | 50S ribosomal protein L27 TERM 3410 3719836 - 3719856 + F 100 -14.7 -5.04601 | opp_overlap 3719836 CAAGCGGAAGCAAAA GCCCCGTCC GCT GGATGGGGC TTTTTAGTTTATGCC TERM 3411 3719856 - 3719836 - f 100 -12.5 -4.43309 | opp_overlap 3719836 CAAGCGGAAGCAAAA GCCCCGTCC GCT GGATGGGGC TTTTTAGTTTATGCC obgE 3719917 - 3721008 + | GTPase ObgE Daro_3473 3721011 - 3722129 + | gamma-glutamyl kinase TERM 3412 3722183 - 3722143 - T 100 -25.8 -3.75629 | opp_overlap 3722154, overlap 3722154 GAGCTTCAAGTCAAA CCAACAAAAAAGCCTCGG CAACC CCGAGGCTTTTTTGTTGG CGCTTGCGGATCGCA TERM 3413 3722172 - 3722154 - T 100 -11.7 -5.59655 | opp_overlap 3722154, overlap 3722143 CAAACCAACAAAAAA GCCTCGG CAACC CCGAGGC TTTTTTGTTGGCGCT TERM 3414 3722154 - 3722172 + T 100 -11.7 -5.45652 | opp_overlap 3722143 3722154 CAAACCAACAAAAAA GCCTCGG CAACC CCGAGGC TTTTTTGTTGGCGCT TERM 3415 3722216 - 3722233 + T 100 -12.7 -4.97405 | opp_overlap 3722216 AGCACCAAAGAAAAA CGGGAGC CGAA GCTCCCG TTTCTTTTTCTAAAT TERM 3416 3722233 - 3722216 - T 100 -12.7 -5.34309 | opp_overlap 3722216 AGCACCAAAGAAAAA CGGGAGC CGAA GCTCCCG TTTCTTTTTCTAAAT Daro_3474 3723417 - 3722263 - | porin TERM 3417 3723541 - 3723555 + r 74 -7.8 -4.00411 | overlap 3723528 TAGCAACCTGTGTTT GCGTTG TTG CGACGC TTCTTTGACGTTTTG Daro_3475 3724379 - 3723591 - | indole-3-glycerol phosphate synthase Daro_3476 3725398 - 3724376 - | anthranilate phosphoribosyltransferase Daro_3477 3725967 - 3725395 - | anthranilate synthase component II TERM 3418 3725804 - 3725787 - G 73 -10.5 -3.64703 | TCGCTGCCAGCGAAA CACCGGC CTGG GCCGGCG CACAAGGGCCGGGGG TERM 3419 3726180 - 3726126 - g 91 -5.5 -5.40072 | gap 1, opp_overlap 3726153, overlap 3726127 TCGCTCCTAAAAAAA TGGGCATG-AGCTTACCAACCAGGCC ACCA GGCCAGATCGGCACGCTGCTGGCCCT GTTCATCGCCGTCCT TERM 3420 3726179 - 3726127 - g 71 -9 -3.83561 | gap 1, opp_overlap 3726153, overlap 3726126 CGCTCCTAAAAAAAT GGGCATG-AGCTTACCAACCAGGCC ACCA GGCCAGATCGGCACGCTGCTGGCCC TGTTCATCGCCGTCC TERM 3421 3727067 - 3727115 + G 76 -14 -3.02144 | gap 2, overlap 3727045 GCATTCGGGCCGATG GCCAT-CCTGCTGGTCGC-CTGGT TAC GCCAGCGCGACCAGCACAAATGGC TATTGACCGGGGTCG Daro_3478 3726071 - 3727591 + | hypothetical protein TERM 3422 3727826 - 3727841 + G 83 -2.6 -5.17576 | gap 1 CCGGCACCCGATGTT GAAATCG CGG CG-TTTC TTTTTTGGCTTCCTG TERM 3423 3727937 - 3727910 - g 74 -5.4 -4.56597 | overlap 3727911 3727913 TGCCGGCCTGAAAAA CCACGTCGGACG CGCC CGCCCGGCGCAA ATCGAGGCTTTCGGC TERM 3424 3728200 - 3728221 + G 78 -2.2 -5.04385 | TCGCCACCTACTTTT GCCTATGC CTGACC GAATGGGC TTTTTTGCAGCTCTC Daro_3479 3727572 - 3728339 + | phosphoesterase, PA-phosphatase related Daro_3480 3728428 - 3729438 + | glycosyl transferase family protein TERM 3425 3729499 - 3729443 - T 100 -22 -2.60423 | opp_overlap 3729462, overlap 3729429 3729462 AGCCGAACTAATCTA GCCTCAGC-CAAACAAAAAAGCCGCTCA TTT CGAGCGGCTTTTTTGTTTGTGC-GACGC GATGCAATCAGTCGA TERM 3426 3729480 - 3729462 - T 100 -12.4 -5.65927 | opp_overlap 3729462, overlap 3729443 CAGCCAAACAAAAAA GCCGCTCA TTT CGAGCGGC TTTTTTGTTTGTGCG TERM 3427 3729462 - 3729480 + T 100 -11.7 -5.72622 | opp_overlap 3729462 3729443 CAGCCAAACAAAAAA GCCGCTC ATTTC GAGCGGC TTTTTTGTTTGTGCG Daro_3481 3730982 - 3729507 - | anthranilate synthase component I TERM 3428 3729971 - 3730001 + g 74 -5.5 -4.47707 | overlap 3729968 3729974 CGCAGTCGTTGCGGC CGAGGTCGAGCA-AC TGG GTATGTTCGGCC-CG TTCTTTTTCATCGGC Daro_3482 3731785 - 3731105 - | phosphoglycolate phosphatase Daro_3483 3732486 - 3731785 - | ribulose-5-phosphate 3-epimerase apaG 3732523 - 3732906 + | ApaG Daro_3485 3732914 - 3733507 + | phosphatidylethanolamine N-methyltransferase / phosphatidyl-N-methylethanolamine N-methyltransferase Daro_3486 3734590 - 3733463 - | hypothetical protein argJ 3735816 - 3734590 - | bifunctional ornithine acetyltransferase/N-acetylglutamate synthase protein TERM 3429 3735230 - 3735252 + g 72 -14.2 -2.52516 | opp_overlap 3735230, overlap 3735229 TCGGTGGCCAGGAAA CCGAGCATGG TCG CCATGTTCGG CTTGATCATGCCAGC TERM 3430 3735252 - 3735230 - G 80 -12 -3.72576 | opp_overlap 3735230 3735229 TCGGTGGCCAGGAAA CCGAGCATGG TCG CCATGTTCGG CTTGATCATGCCAGC TERM 3431 3735691 - 3735669 - G 72 -11.2 -3.34398 | overlap 3735667 GGTTCTGGGTAAACA CGCCGGCCAC CGT GCAACCGGCG TCGAGCGCCACCAGA Daro_3488 3738591 - 3735877 - | preprotein translocase subunit SecA TERM 3432 3737027 - 3737043 + g 72 -2.9 -4.74706 | overlap 3737009 3737007 AGCGACTCGTCATCG CGAATGG CAG CCAGTTG TTTTTCGATGTTGCC TERM 3433 3737586 - 3737617 + g 81 -13.8 -3.29144 | opp_overlap 3737585 3737582, overlap 3737534 CGGCCATCAGACGAC CGGTGAATTCGTCG ACGA TGACGACTTCACCG TTCTGCACGACGTAA Daro_3489 3739557 - 3738691 - | peptidase M23B TERM 3434 3739394 - 3739409 + g 74 -3.2 -4.76075 | overlap 3739395 AGTTGCAAATTATTG TCGAGG TAAT CCTTGG TTTTCTTGCTCTCCT Daro_3490 3739624 - 3740058 + | hypothetical protein Daro_3491 3740233 - 3740045 - | hypothetical protein lpxC 3741157 - 3740240 - | UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase TERM 3435 3741179 - 3741215 + r 100 -13.7 -4.58395 | opp_overlap 3741175 TATCTGAATGATTGG GGAAGGTGACGGATTGT AAC ACAACCCGTCACCACCC TTTTTCAGAGATGGA Daro_3493 3742439 - 3741243 - | cell division protein FtsZ TERM 3436 3742220 - 3742246 + g 72 -12.3 -3.01712 | gap 1 CGGCCTGGCCGGCTT CCGG-CTTGGCG CCTG CGCCGAGGCCGG TCTTGCCGAGCGACA Daro_3494 3743704 - 3742475 - | cell division protein FtsA Daro_3495 3744449 - 3743709 - | cell division protein FtsQ ddl 3745363 - 3744458 - | D-alanine--D-alanine ligase murC 3746751 - 3745360 - | UDP-N-acetylmuramate--L-alanine ligase murG 3747806 - 3746748 - | N-acetylglucosaminyl transferase Daro_3499 3748966 - 3747803 - | cell cycle protein Daro_3500 3750315 - 3748963 - | UDP-N-acetylmuramoylalanine--D-glutamate ligase Daro_3501 3751419 - 3750316 - | phospho-N-acetylmuramoyl-pentapeptide-transferase Daro_3502 3752789 - 3751419 - | UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase TERM 3437 3752080 - 3752068 - G 82 -9.1 -4.3586 | overlap 3752070 TTATCGATACCAAAA GTCCG TAC CGGAC GGCCGCCGGCCATGC Daro_3503 3754264 - 3752786 - | UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase TERM 3438 3753080 - 3753109 + g 72 -13.5 -2.58544 | overlap 3753079 ATCAGCCAGGCGCTC GGCAAGCGCCCCC ATCT GCGGACGCTTGCC CTTGTCGCGATCACC Daro_3504 3756009 - 3754261 - | peptidoglycan synthetase FtsI TERM 3439 3754371 - 3754361 - G 73 -4.6 -4.59853 | GCAATCTGCGAAAAA GCCG GAC CAGC CACATCGCCACCGTA Daro_3505 3756293 - 3756009 - | cell division protein, FtsL -like Daro_3506 3757220 - 3756294 - | methyltransferase TERM 3440 3756947 - 3756932 - G 77 -3.2 -4.97158 | CCACATCAAACAAAA CGCCAT CTAC ATCGCG AATCCCAGCCTCATC TERM 3441 3757027 - 3757009 - G 84 -3.8 -5.1861 | TGCACCAGCAAAAAA CGGGAATC ATC AATTTCCG CACCCGCCGCAATGG TERM 3442 3757259 - 3757238 - R 78 -10.8 -3.56099 | opp_overlap 3757251 3757254, overlap 3757228 3757251 GACAAGGTCTCCAAA GCCCGGCG GAAGAT CGCCGGAC AGCGCCTCCGCTGCC Daro_3507 3757663 - 3757217 - | cell division protein MraZ TERM 3443 3757908 - 3757881 - R 71 -3.4 -4.74103 | gap 1, overlap 3757882 3757883 3757885 GGCTTAAGCCAAAAA CGCACCTCGGC CGATCAT GCCGACGTG-G TAAAAAGTGGAATGA Daro_3508 3759887 - 3757971 - | diguanylate cyclase TERM 3444 3759972 - 3759952 - R 70 -11.1 -2.76442 | overlap 3759949 3759954 ACCATCAGGCAATCA CACGCCGGA AGC TCCGACGCG GCAAGCGACAAGCGG Daro_3509 3760720 - 3760019 - | putative thiol:disulphide interchange protein (periplasmic) Daro_3510 3761893 - 3760730 - | hypothetical protein TERM 3445 3760846 - 3760806 - G 89 -10.6 -4.45399 | gap 1, opp_overlap 3760818 ACATTAAGACCAAAA TTGCGCAAAGGA-CTCAGC CCAG GCTGAGTTCCCTTGAACAA GCGCCGCAAGCCATC Daro_3511 3762307 - 3761933 - | hypothetical protein TERM 3446 3762347 - 3762323 - R 100 -12.9 -5.22039 | opp_overlap 3762322 3762321 TGGAAACCGAAAAAA CGGAGTCCGTC AAA AACGAACTCCG CATTCATTAACACCG Daro_3512 3762664 - 3762365 - | histone-like DNA-binding protein TERM 3447 3762491 - 3762503 + g 73 -10.5 -3.5774 | CGGATTCTTGCCGGT GCGCG CTG CGCGC TTTGCGGACTTGAAT TERM 3448 3762720 - 3762702 - R 75 -5.3 -4.65747 | gap 1 CAATGTTTAAGAAAA CTGGCCGT CGGA ACGGC-AG CACTGTAAAAGTAGC TERM 3449 3762864 - 3762840 - R 100 -13.6 -4.42386 | opp_overlap 3762840, overlap 3762844 TCTGTACTGACAAAA CAAACCCGGC ACGGA GCCGGGTCTG TTTCAAGGCCACCAG TERM 3450 3762840 - 3762864 + r 82 -11.4 -3.53012 | opp_overlap 3762840 3762844 TCTGTACTGACAAAA CAAACCCGGC ACGGA GCCGGGTCTG TTTCAAGGCCACCAG TERM 3451 3762860 - 3762844 - R 100 -10.8 -4.7878 | opp_overlap 3762840, overlap 3762840 TACTGACAAAACAAA CCCGGC ACGGA GCCGGG TCTGTTTCAAGGCCA Daro_3513 3763535 - 3762888 - | periplasmic nitrate reductase subunit NapC TERM 3452 3762920 - 3762932 + g 89 -10.5 -4.59773 | overlap 3762918 TGCCTTCTTCCTTGG CCGGC TCA GCCGG TTTTTCGCCGTGGGA Daro_3514 3763975 - 3763535 - | periplasmic nitrate reductase subunit NapB TERM 3453 3763994 - 3764017 + r 100 -12.4 -5.13521 | gap 1 ATTACCTCCGATGGA CGGCCGG-GGT TGT GCCACCGGCCG TTTTTTCGCTCATTT Daro_3515 3766561 - 3764048 - | nitrate reductase Daro_3516 3766827 - 3766558 - | periplasmic nitrate reductase chaperone NapD Daro_3517 3767108 - 3767671 + | Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen TERM 3454 3767727 - 3767698 - f 93 -13.5 -3.6914 | opp_overlap 3767702, overlap 3767693 3767701 AACCGCAACAGAGAA GACTTCCCGCCGC CTCG GCGGCGGGATTTC AGTGAAAAGCGGCGG TERM 3455 3767724 - 3767701 - f 84 -13.8 -2.64695 | opp_overlap 3767702, overlap 3767693 3767698 CGCAACAGAGAAGAC TTCCCGCCGC CTCG GCGGCGGGAT TTCAGTGAAAAGCGG TERM 3456 3767702 - 3767723 + F 100 -17.3 -3.64703 | opp_overlap 3767693 3767701 3767698 GCAACAGAGAAGACT TCCCGCCGC CTCG GCGGCGGGA TTTCAGTGAAAAGCG TERM 3457 3767753 - 3767736 - f 100 -14.1 -4.1899 | opp_overlap 3767736 GGATTTCAGTGAAAA GCGGCGG ACAA CCGCCGC TTTTCACTGAAATTC TERM 3458 3767736 - 3767753 + F 100 -14.1 -4.19704 | opp_overlap 3767736 GGATTTCAGTGAAAA GCGGCGG ACAA CCGCCGC TTTTCACTGAAATTC TERM 3459 3768446 - 3768425 - g 85 -5.7 -5.04249 | opp_overlap 3768429 TTGGCAAAAAAGAAA CCTTCGACG TGCT CGTCGTTGG TGGTGGCCCGGCGGG Daro_3518 3767794 - 3769359 + | FAD-dependent pyridine nucleotide-disulphide oxidoreductase:pyridine nucleotide-disulphide oxidoreductase, class-II, active site TERM 3460 3769412 - 3769377 - f 90 -13.2 -3.53012 | opp_overlap 3769380, overlap 3769380 TGCCCTTGCCTTAAA CTACGGCCAGCGACGG CTTA CCGTCCCTGGCCGTTT TTCTTTCGGGAAGCA TERM 3461 3769409 - 3769380 - f 100 -19.3 -2.90496 | opp_overlap 3769380, overlap 3769377 CCTTGCCTTAAACTA CGGCCAGCGACGG CTTA CCGTCCCTGGCCG TTTTTCTTTCGGGAA TERM 3462 3769380 - 3769409 + F 100 -19.3 -5.27335 | opp_overlap 3769380 3769377 CCTTGCCTTAAACTA CGGCCAGCGACGG CTTA CCGTCCCTGGCCG TTTTTCTTTCGGGAA Daro_3519 3769432 - 3769920 + | thioesterase superfamily protein TERM 3463 3769937 - 3769968 + T 95 -17.4 -2.50492 | opp_overlap 3769938 3769942, overlap 3769942 CGAAGAACGTAAACG ACAAAGCCCGCTGA CGAA TCAGCGGGCTTTGA GTGTTACTGGTGGTG TERM 3464 3769967 - 3769938 - T 100 -20.9 -2.99849 | opp_overlap 3769937 3769942, overlap 3769942 GAAGAACGTAAACGA CAAAGCCCGCTGA CGAA TCAGCGGGCTTTG AGTGTTACTGGTGGT TERM 3465 3769963 - 3769942 - T 100 -15.9 -4.15328 | opp_overlap 3769937 3769942, overlap 3769938 AACGTAAACGACAAA GCCCGCTGA CGAA TCAGCGGGC TTTGAGTGTTACTGG TERM 3466 3769942 - 3769963 + T 100 -15.9 -3.77831 | opp_overlap 3769942 3769938, overlap 3769937 AACGTAAACGACAAA GCCCGCTGA CGAA TCAGCGGGC TTTGAGTGTTACTGG Daro_3520 3770879 - 3770094 - | hypothetical protein Daro_3521 3771624 - 3771025 - | BRO, N-terminal TERM 3467 3771414 - 3771436 + g 77 -8.5 -4.32034 | opp_overlap 3771414 CTTGTTCGCCACCAA GGGTACTCA GATTG TGAGTATCC TTTTCGTCGTCATCA Daro_3522 3772478 - 3772077 - | hypothetical protein TERM 3468 3772700 - 3772675 - R 100 -11.1 -5.42514 | opp_overlap 3772674 3772672 CTACAAATGAAAAAA GCCACCTGCGG AGTA CCGGAGATGGC CTGTTGGGTTACAAG Daro_3523 3773631 - 3773077 - | resolvase, N-terminal:resolvase helix-turn-helix region TERM 3469 3773822 - 3773794 - R 72 -5.9 -4.37092 | opp_overlap 3773794, overlap 3773820 ACGGTCGCTAGAAAA GGGGGCGGCGAAT CCC ATTCATCACACCC TTCACTCATCCGAAG Daro_3524 3774702 - 3773998 - | hypothetical protein TERM 3470 3774608 - 3774597 - G 71 -5.8 -4.39166 | TCGGATATACGAAAA GTGG CGCA CCAC TGAGAATCGCCTGAA Daro_3525 3776478 - 3774763 - | C-5 cytosine-specific DNA methylase Daro_3526 3778154 - 3776475 - | Phage integrase TERM 3471 3777998 - 3778008 + g 89 -4.6 -5.21236 | AGCGCTCGTCGTTTA GGTC TTT GGCC TTTTTCTTGTCCCTT TERM 3472 3778027 - 3778048 + g 72 -2.9 -4.81212 | TTCTTGTCCCTTGTA CGCAAAGTC TTTT GAATGTGCG TTTTGTTGTAATGGG TERM 3473 3778237 - 3778193 - H 90 -14.5 -2.91695 | opp_overlap 3778190, overlap 3778196 GGGAGTTGGAAAGTA TAAGGCCCTGAGTCACAAG GGGTAAT CTTGCAAATCAGGGCCTTA CGGTATTACGTGGTG TERM 3474 3778234 - 3778196 - H 85 -11.8 -3.60419 | opp_overlap 3778190, overlap 3778193 AGTTGGAAAGTATAA GGCCCTGAGTCACAAG GGGTAAT CTTGCAAATCAGGGCC TTACGGTATTACGTG Daro_3527 3778444 - 3779781 + | hypothetical protein Daro_3528 3779762 - 3780784 + | PhoH-like protein Daro_3529 3780756 - 3781205 + | hypothetical protein Daro_3530 3781211 - 3782059 + | CBS:transporter-associated region TERM 3475 3782061 - 3782109 + G 77 -14.4 -2.7314 | opp_overlap 3782049, overlap 3782056 3782060 3782058 3782100 ATACGCCTGCCTGAG CGGCCGCTGCACCGCTTTGGCC TTGCC GCCCTGATCGGTGCGGCGGGCG TCCTCTGCTTTGCGC Daro_3531 3782037 - 3783500 + | apolipoprotein N-acyltransferase Daro_3532 3784089 - 3783541 - | methionine sulfoxide reductase A TERM 3476 3784169 - 3784115 - R 78 -10.6 -3.54602 | opp_overlap 3784118 GAATCAATACGATAA CTTTCGGACCGCGCGCGCTGCCGA TTGTTCC CCGGCAGCACTGGCAACCCGACAG CGACCGTAACGATCA Daro_3533 3784862 - 3784182 - | lytic transglycosylase, catalytic TERM 3477 3785439 - 3785401 - g 73 -10.2 -3.6682 | gap 1, overlap 3785436 CCCGAGCCATGGAAA GCCG-CCTACGTGCAGC CATCGC GCCGCCCGAAGGACGGC CGCTACGGCGAGAAT TERM 3478 3785622 - 3785604 - g 71 -8 -4.12188 | GGACGACTGGGAAAA CCCGACGC TCG GCGCCTGG GGCCTCGGCTGGGAA glyQ 3785185 - 3786168 + | glycyl-tRNA synthetase subunit alpha TERM 3479 3786298 - 3786280 - g 78 -7.3 -4.58283 | overlap 3786281 GAATTCCCTGAAAAA TGCCGGC CTGGC GCCGGCG ACAGCAAGCATCACC Daro_3535 3786170 - 3788308 + | glycyl-tRNA synthetase, beta subunit TERM 3480 3788411 - 3788369 - g 89 -17.1 -3.14564 | overlap 3788396 3788397 CGACGGCGTCATCAA CTTCGACTCGGCCCAGTTC ATCAA GAACCCGGCCGAGTGGAAG CCGATTCCCGGCAGC Daro_3536 3788325 - 3788876 + | D,D-heptose 1,7-bisphosphate phosphatase TERM 3481 3789094 - 3789070 - g 71 -8.5 -4.07885 | opp_overlap 3789072 3789075, overlap 3789033 3789072 CATCGGCCTGGAAAA CATGCCGCAGG AAC CCTGCGTCATT CTCGCCAAGCACCAG TERM 3482 3789072 - 3789092 + G 72 -11.1 -3.28712 | opp_overlap 3789033 3789070 3789072, overlap 3789075 TCGGCCTGGAAAACA TGCCGCAGG AAC CCTGCGTCA TTCTCGCCAAGCACC TERM 3483 3789092 - 3789072 - g 77 -11.1 -3.63744 | opp_overlap 3789072 3789075, overlap 3789033 3789070 TCGGCCTGGAAAACA TGCCGCAGG AAC CCTGCGTCA TTCTCGCCAAGCACC Daro_3537 3788873 - 3789625 + | phospholipid/glycerol acyltransferase TERM 3484 3789709 - 3789760 + G 72 -12.3 -3.0263 | gap 2 CGATAGGCTTGACCA TCGACCATCGCGGCCTGCGGGTCGG TGCG CCGACCCG-GGCCCG-GATCGGCGA TATTGAAAAACTGAT TERM 3485 3789782 - 3789771 - g 73 -4.4 -4.70659 | GGCGATATTGAAAAA CTGA TTCA TCAG CACGGCGACTGGGTG Daro_3538 3789603 - 3790322 + | hypothetical protein Daro_3539 3790333 - 3790716 + | glyoxalase I TERM 3486 3790781 - 3790754 - T 100 -14.2 -4.36914 | opp_overlap 3790749 3790754 3790757 CCCGTTCCCATAAAA GAAGAGGCCATC CCAG GACGGCCCCTTC TGCTGTTCTTGCGGC Daro_3540 3791963 - 3790830 - | extracellular ligand-binding receptor TERM 3487 3792574 - 3792602 + G 74 -12.3 -3.2048 | opp_overlap 3792590 ATGGGGGCTTCAAGG GGCTCGGCGGGCA ACA TGCCCGGCGGGGC TTGCTAAAGTTTGGC Daro_3541 3792252 - 3792866 + | hypothetical protein Daro_3542 3792927 - 3793301 + | response regulator receiver Daro_3543 3794430 - 3793309 - | glycosyl transferase, group 1 Daro_3544 3794846 - 3794430 - | diacylglycerol kinase Daro_3545 3795003 - 3796316 + | OmpA-like transmembrane domain-containing protein Daro_3546 3796417 - 3796791 + | cyclic nucleotide-binding Daro_3547 3798175 - 3796994 - | 1,2-diacylglycerol 3-glucosyltransferase Daro_3548 3798980 - 3798177 - | metallophosphoesterase TERM 3488 3798885 - 3798860 - G 72 -13.3 -2.58398 | opp_overlap 3798857, overlap 3798850 3798859 3798857 AGAAATCGACAATAT CGCCGATCAGA TAAG TCTGTTCGGCG GGATGTTCGCGCAGG TERM 3489 3799001 - 3799031 + r 73 -3.9 -4.87133 | gap 1, overlap 3799000 CACGATACGACCCAC CCGTGAC-CCGCTG GTTA CTGCTGCGTTACGG TTTTATTTCGCACGT Daro_3549 3802022 - 3799074 - | PAS/PAC sensor hybrid histidine kinase Daro_3550 3803227 - 3802391 - | phosphoesterase, PA-phosphatase related TERM 3490 3803103 - 3803083 - G 73 -13.9 -2.78547 | overlap 3803080 GCACCGGAGGAAGCA CGGCGCTGG CCG CCTGCGCCG GGATGAAACCAGCCT Daro_3551 3804870 - 3803227 - | glycosyl transferase family protein TERM 3491 3804221 - 3804208 - G 81 -5.9 -4.82901 | opp_overlap 3804196 3804195 GCCCGGCCAGAAAAA GGCCG CTTT CAGCC AGTCACGCCAGGCGC TERM 3492 3804275 - 3804255 - G 85 -6.8 -4.75472 | overlap 3804257 3804270 CCGAGACGAAGAAAA TACCGCTG ATCAA CAGCGGGA ACATCACCGCGACCG TERM 3493 3804273 - 3804257 - G 73 -9.4 -3.9902 | overlap 3804255 3804270 GAGACGAAGAAAATA CCGCTG ATCAA CAGCGG GAACATCACCGCGAC TERM 3494 3805564 - 3805521 - g 72 -11.1 -3.31792 | GGACGATGTCCAGAA GGCCTGGGATT-ACGCGGCCA GCGG TGGCCGCGTCAATCAG-GGCC GGGTCATCGTCGAAG TERM 3495 3806143 - 3806092 - g 71 -7 -4.1552 | gap 1, overlap 3806129 GAGTCCTTCAAGAAA CGC-CGCATGGGCGTGGCCGTCGCC AAT GGCGAGAGCACCGACCAGGCCCGCG AACGGGCCAAGCTGG purT 3804991 - 3806190 + | phosphoribosylglycinamide formyltransferase 2 TERM 3496 3806266 - 3806283 + T 79 -2.6 -5.19261 | overlap 3806267 TTCAGGCGCCGCGCA TCCGCT CGATCT GGCGGG TTTTTTCCTCGATTT Daro_3553 3807406 - 3806252 - | response regulator receiver TERM 3497 3807094 - 3807104 + g 72 -2.4 -4.73613 | AGTCAACCGCCCCCA GTGC AAA GCCC TTTTCTTCATCGTCG Daro_3554 3808331 - 3807555 - | hypothetical protein TERM 3498 3808548 - 3808533 - g 72 -2.4 -4.84363 | GGAAATGACCAAAAA GCCCGC ATCT GCCAGC GCAGAAAACCCCGAT Daro_3555 3808522 - 3809886 + | chromate transporter Daro_3556 3811801 - 3809921 - | K+ potassium transporter TERM 3499 3811765 - 3811778 + g 71 -8.1 -4.04671 | AGGCAGCCAGTGTGA GCGTC GCCA GACGC TTCTTGTCTTGTTCT Daro_3557 3812504 - 3811812 - | response regulator receiver:transcriptional regulatory protein, C-terminal Daro_3558 3814039 - 3812501 - | sensor histidine kinase TERM 3500 3814257 - 3814275 + r 83 -13.1 -3.05384 | opp_overlap 3814257, overlap 3814270 GACAGGCGAAAAAAA GCCCGGC ACAGA GCCGGGC TTCAATGAAGAGCGG TERM 3501 3814275 - 3814257 - R 100 -13.1 -5.45726 | opp_overlap 3814257 3814270 GACAGGCGAAAAAAA GCCCGGC ACAGA GCCGGGC TTCAATGAAGAGCGG Daro_3559 3814880 - 3814317 - | hypothetical protein TERM 3502 3814795 - 3814773 - G 87 -9.8 -4.43012 | opp_overlap 3814772 3814776 ACTGGAAGACGAAAA CAACTCGGAG AAG CGCCGAGTCG CTTCGATACAGGCCG Daro_3560 3815640 - 3814942 - | ribose-5-phosphate isomerase A TERM 3503 3815791 - 3815763 - g 74 -3.7 -4.72617 | overlap 3815756 3815766 3815777 GTACAAAACAAGAAA GACCTTGCAGCCA AGC CGGCTGCCACACC GAAGCCGCCGAAAAA TERM 3504 3815823 - 3815808 - g 85 -5.4 -5.01732 | gap 1, overlap 3815809 3815810 AAGCCGCCGAAAAAA CTGGTGC CGC GCACC-G CGCCGAAGGTCGAGA Daro_3561 3815742 - 3816311 + | hypothetical protein TERM 3505 3816378 - 3816323 - f 91 -12.1 -3.83042 | opp_overlap 3816375, overlap 3816324 3816377 GTAGGCAAAAAGTAA GTGTTTCT-CCCGTTTGTTACAGCCTG TCAT CTGGCTGTAACAAACGGCCAGTAAC-C TGCACAGCGTTAATC TERM 3506 3816378 - 3816324 - f 78 -12.3 -2.89102 | gap 1, opp_overlap 3816375, overlap 3816323 3816377 TAGGCAAAAAGTAAG TGTTTCT-CCCGTTTGTTACAGCCTG TCAT CTGGCTGTAACAAACGGCCAGTAACC TGCACAGCGTTAATC TERM 3507 3816409 - 3816377 - f 85 -13.5 -3.17982 | opp_overlap 3816375, overlap 3816323 3816324 ACAAACGGCCAGTAA CCTGCACAGCGTTAA TCC CCAACCCTGTGCAGG AGTTACCTAATGTTC Daro_3562 3816419 - 3817420 + | phosphate binding protein TERM 3508 3817444 - 3817466 + F 100 -12.7 -4.46212 | opp_overlap 3817444 CCTGTCGTAAAAAAA GCCCGATCC CTCGC GGGTCGGGC TTTTATCATAGGGAA TERM 3509 3817466 - 3817444 - f 100 -11.3 -5.40072 | gap 1, opp_overlap 3817444 CCTGTCGTAAAAAAA GCCCGATCCC TCGC GGG-TCGGGC TTTTATCATAGGGAA Daro_3563 3817505 - 3818440 + | phosphate ABC transporter permease TERM 3510 3819188 - 3819164 - g 78 -15.7 -2.62184 | opp_overlap 3819162 CGGTGCCTTACACCA CCGGCGCTGAC GGT GTCACCGCCGG CCTGTTCGACTGGGT Daro_3564 3818440 - 3819378 + | phosphate ABC transporter permease Daro_3565 3819435 - 3820214 + | phosphate ABC transporter permease TERM 3511 3820434 - 3820417 - g 70 -3.3 -4.68506 | AATGAACTCGAAAAA GCGATCG ACGA CGACTGC GCCCACATCATTGCC TERM 3512 3820556 - 3820544 - g 78 -4.7 -4.72631 | overlap 3820545 ACGAAGCCAAGAAAA TCGCC AAG GGCGT TCGCCGCATCTATGA Daro_3566 3820228 - 3820917 + | phosphate uptake regulator, PhoU TERM 3513 3821133 - 3821116 - g 78 -6.9 -4.63932 | CATTGGCCAAGAAAA TCCGCGC CGAC GAGCGGA CCCGCGAATTGCCGA Daro_3567 3820914 - 3821600 + | phosphate regulon transcriptional regulatory protein phoB TERM 3514 3821875 - 3821858 - g 72 -2.7 -4.72986 | overlap 3821872 3821874 TATCGTCACGAAAAA GATCTAC GTGA ACAGATC GCCCAGCGCGACCAC TERM 3515 3822354 - 3822331 - g 76 -6.8 -4.49556 | gap 1, overlap 3822332 CCGCGAGGAAAGAAA CCGCTACATCA ACA TGATG-AGCGA GCAGTCAAAGCGCAT Daro_3568 3821606 - 3822898 + | sensor histidine kinase Daro_3569 3823255 - 3823695 + | hypothetical protein TERM 3516 3823728 - 3823693 - f 100 -15.6 -4.44667 | gap 1, opp_overlap 3823700, overlap 3823700 GTCCCCAAGAAGAAA TGAGCAATGCCGCGCTC AAG GAGCGCGGCATT-CTTA CCCAAGATCGGCTTA TERM 3517 3823700 - 3823722 + F 100 -19.2 -3.61715 | opp_overlap 3823700 3823693 AGAAGAAATGAGCAA TGCCGCGCTC AAG GAGCGCGGCA TTCTTACCCAAGATC TERM 3518 3823722 - 3823700 - f 100 -19.2 -3.38256 | opp_overlap 3823700, overlap 3823693 AGAAGAAATGAGCAA TGCCGCGCTC AAG GAGCGCGGCA TTCTTACCCAAGATC TERM 3519 3824342 - 3824330 - g 77 -7.7 -4.36595 | GACGTAAATGCAAAA GGTCA ATT TGACC GGGTGGCGCTTCATT Daro_3570 3824057 - 3825352 + | ankyrin TERM 3520 3825552 - 3825540 - T 81 -9.1 -4.08394 | ATACCTGCCCGAAAA CCTGG GCA CCAGG CAGGCCAAGTCAGTT Daro_3571 3827397 - 3825562 - | diguanylate cyclase/phosphodiesterase TERM 3521 3826983 - 3827005 + g 75 -8.4 -4.21275 | overlap 3827002 AGGCCTCAAGGATGC CCGGCATATC GGT GATCTGCTGG TTTTCAGTCAATTCG TERM 3522 3827169 - 3827127 - G 100 -10.4 -4.84359 | opp_overlap 3827131 TCACGTTGAGAAAAA GCCGCCCCGCCAGCCGTTGC GCC GCAAAGGCTCGCAAGCTGGC TTCCCGGCAGGCATG TERM 3523 3827348 - 3827328 - G 70 -3.2 -4.58283 | gap 1, overlap 3827340 GAATTGGCTGAAAAA CCG-GGAAC AAAA GCCCCTCGG CCATAATTCGTTGCA Daro_3572 3827631 - 3827870 + | hypothetical protein Daro_3573 3827877 - 3828326 + | GCN5-related N-acetyltransferase Daro_3574 3828453 - 3828623 + | hypothetical protein Daro_3575 3828739 - 3829401 + | transport-associated protein Daro_3576 3831233 - 3829398 - | TRAP C4-dicarboxylate transport system permease DctM subunit TERM 3524 3830275 - 3830252 - G 84 -10.2 -4.25283 | opp_overlap 3830266, overlap 3830253 ACGGCGCCAGCAAAA CGCCCAGCGC ACTG GCGCTGGTCA CCAGGCTGATGCCGC TERM 3525 3830746 - 3830724 - G 70 -9.8 -3.45571 | opp_overlap 3830738 3830741, overlap 3830718 3830707 GCCGGCAAACAGGAA GCCTGCCACC GGC AGCAGCAGGC CGAGAACAACGCGAC TERM 3526 3831044 - 3831001 - G 84 -11.6 -4.08216 | gap 1, overlap 3831016 3831020 CCAGCGGCGGCAAAA CCGG-CGCCGAGCGAACTCAG ATG CTGGCCGCGCTCGGCGACCAG CGCGCCAAACATGGC TERM 3527 3831066 - 3831020 - G 83 -16.6 -2.54896 | overlap 3831001 3831016 3831054 3831056 CGCCGAGCGAACTCA GATGCTGGCCGCGCTCGGCG ACCAGCG CGCCAAACATGGCCAGCACC AGCCCGAGATGCTGG Daro_3577 3832244 - 3831237 - | TRAP dicarboxylate transporter- DctP subunit Daro_3578 3833163 - 3832273 - | hypothetical protein TERM 3528 3833200 - 3833223 + r 75 -11.7 -3.01924 | opp_overlap 3833199 3833196 GCCGTCACGAATCAG TTGGCCGGC ACACTA GCCGGCCGA TGTTACAGAGGGATG Daro_3579 3834917 - 3833253 - | chemotaxis sensory transducer TERM 3529 3833532 - 3833550 + g 77 -14.6 -2.71815 | overlap 3833527 GCGCTGCGCCCGTTC GGCGGTTG CCG CAACCGCC TGCGTTGTTTGAGTA TERM 3530 3833579 - 3833593 + g 79 -7.8 -4.45168 | TAGCCGCATCGCCAA GCTTGG TCA CCAGGC TTTCTATTTTGCGGG TERM 3531 3834134 - 3834152 + g 71 -7.4 -4.16943 | opp_overlap 3834132 3834131 3834134 TTTCGATGGAAACCA GCAGCG AATTGGC CGCTGC TTTTCCGGTATGCAG Daro_3580 3836046 - 3835162 - | LysR family transcriptional regulator TERM 3532 3836227 - 3836241 + G 72 -2.7 -4.82901 | overlap 3836194 3836186 TCACGATGGGGATTC GCCAG TCGTT CGGGC TTTTTGTCAGCCCGC Daro_3581 3836145 - 3837362 + | major facilitator transporter Daro_3582 3837393 - 3837824 + | phenylacetic acid degradation-related protein TERM 3533 3837900 - 3837875 - T 100 -14.1 -5.03314 | opp_overlap 3837874 3837880, overlap 3837880 GTCACCCTGAAAAAA CAAAACCCCGC CGCA GCGAGGTTTTG CTTGATCCGGCAAAA TERM 3534 3837895 - 3837880 - T 100 -8.2 -5.42198 | opp_overlap 3837874 3837880, overlap 3837875 CCTGAAAAAACAAAA CCCCGC CGCA GCGAGG TTTTGCTTGATCCGG TERM 3535 3837880 - 3837895 + T 74 -6 -4.45544 | opp_overlap 3837880 3837875, overlap 3837874 CCTGAAAAAACAAAA CCCCGC CGCA GCGAGG TTTTGCTTGATCCGG Daro_3583 3838189 - 3837917 - | hypothetical protein Daro_3584 3839541 - 3838222 - | N-acetylglutamate synthase TERM 3536 3839296 - 3839308 + g 81 -5.5 -4.82901 | GTAGCCGCGGTGGTA CTTCG ACT CGAGG TTTTTCTCGGCAAGC Daro_3585 3841043 - 3839538 - | polyphosphate:AMP phosphotransferase TERM 3537 3840421 - 3840438 + g 74 -12.7 -3.14132 | CCTTCGACGATGATC CACGGCG CATG CGCCGTG TTGGTCACGCGCAGC Daro_3586 3841784 - 3841047 - | hypothetical protein TERM 3538 3841103 - 3841074 - G 76 -12.9 -3.30635 | gap 1 GAAATCGCCCCATAA GGCCT-GCAGCGCC GCC AGCGCTGCCAGACC CGCCGTTTCCGTGCG Daro_3587 3841826 - 3842380 + | hypothetical protein TERM 3539 3843548 - 3843529 - g 88 -6.4 -4.88067 | AGTCACCCAGAAAAA CGGCAG CAACTTCC CTGCCG GCGCACGAATCAACC Daro_3588 3842471 - 3844954 + | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) Daro_3589 3844988 - 3846004 + | D-fructose 1,6-bisphosphatase Daro_3590 3846047 - 3846700 + | hypothetical protein TERM 3540 3846749 - 3846712 - f 100 -14.3 -4.17023 | gap 1, opp_overlap 3846720, overlap 3846720 GTAAGCATGGCAAAA CACAAGAACGGCAGGCCA ACT TGGCCTGCCGTT-TTGCC ATATTGCCCTACCCA TERM 3541 3846720 - 3846742 + F 100 -19.2 -4.1964 | opp_overlap 3846712 3846720 GGCAAAACACAAGAA CGGCAGGCCA ACT TGGCCTGCCG TTTTGCCATATTGCC TERM 3542 3846742 - 3846720 - f 100 -19.2 -4.09656 | opp_overlap 3846720, overlap 3846712 GGCAAAACACAAGAA CGGCAGGCCA ACT TGGCCTGCCG TTTTGCCATATTGCC Daro_3591 3846820 - 3848826 + | transketolase Daro_3592 3848848 - 3849876 + | glyceraldehyde-3-phosphate dehydrogenase TERM 3543 3849889 - 3849914 + F 85 -11.9 -3.57144 | opp_overlap 3849894, overlap 3849894 TAATTGGCCTGGTAT GAAAAGGGGCC GCAA GGCCCCTTTTG TTTCACCCTAGCGGA TERM 3544 3849909 - 3849894 - f 93 -11.8 -4.25104 | opp_overlap 3849889 3849894 GGCCTGGTATGAAAA GGGGCC GCAA GGCCCC TTTTGTTTCACCCTA TERM 3545 3849894 - 3849909 + F 100 -11.8 -4.87803 | opp_overlap 3849894, overlap 3849889 GGCCTGGTATGAAAA GGGGCC GCAA GGCCCC TTTTGTTTCACCCTA Daro_3593 3849935 - 3850984 + | glyceraldehyde 3-phosphate dehydrogenase Daro_3594 3851023 - 3852204 + | phosphoglycerate kinase TERM 3546 3853646 - 3853630 - g 87 -10.1 -4.36914 | CGGTGTCGTAGAAAA GGGCGAC CTG ATCGCCC TGACCATCGGTGAAC Daro_3595 3852296 - 3853729 + | pyruvate kinase Daro_3596 3853780 - 3854844 + | fructose-1,6-bisphosphate aldolase TERM 3547 3854859 - 3854845 - T 74 -8.5 -3.93256 | CAGATCGTCAAATAA GCCGG CTTTT CCGGC TGACCGCAGCACTAC Daro_3597 3855498 - 3854917 - | OmpA/MotB Daro_3598 3855959 - 3855501 - | hypothetical protein TERM 3548 3855773 - 3855783 + g 71 -5.4 -4.4078 | TGTCAGCGCTGGTAA CGAT AAT ATCG TTTTCCTTCAGGCGC Daro_3599 3859635 - 3856000 - | WD-40 repeat-containing protein TERM 3549 3856931 - 3856910 - G 70 -10.1 -3.53012 | overlap 3856911 TTTCCGGTCGTCAAA TCCAGGACG TGGA CGTCCTGGT CCTCCCCCGCCCAAA TERM 3550 3856930 - 3856911 - G 73 -13.6 -2.71712 | overlap 3856910 TTCCGGTCGTCAAAT CCAGGACG TGGA CGTCCTGG TCCTCCCCCGCCCAA TERM 3551 3858245 - 3858255 + g 74 -5.4 -4.56597 | TGCAAGCGCCTTTGG GATG AAG CATC TTTTTCGGCGCGCAG TERM 3552 3858274 - 3858298 + g 74 -11.4 -3.52204 | overlap 3858261 3858260 3858265 3858271 TTCGGCGCGCAGGCG GGCGCGGG TTTCGCTCT CCCGCGCC TTGCTTTCGAGATCG TERM 3553 3859257 - 3859276 + g 71 -6.4 -4.19238 | TGGTATGCAAGTCGA GCCACAAG CGGT CTTCTGGC TTTTCCAGTTGCGGC Daro_3600 3861026 - 3859638 - | hypothetical protein TERM 3554 3859889 - 3859877 - G 85 -6.2 -5.05782 | ACTCATCCCAAAAAA CGCC TTCGC GGCG CTGATCGGCCTCGCT TERM 3555 3859972 - 3859982 + g 88 -2.4 -5.55769 | CTCGACCAGTCCTCA CCGC CGC GCAG TTTTTTCTTATCAAG TERM 3556 3861250 - 3861228 - R 100 -9.8 -5.06414 | opp_overlap 3861242 3861243 GCCCGCGAAGAAAAA CCAAACGCGC TCA GCGCACCTGG AAGGCGCGTGCTTCG Daro_3601 3864414 - 3861238 - | hypothetical protein TERM 3557 3861527 - 3861551 + g 74 -12.9 -3.18366 | overlap 3861525 3861523 GTGATCGGGAAGAGG TTGGTGGCGTC ACC GATGCCGCCAA TGTGTTCGTTGAGCA TERM 3558 3864429 - 3864439 + r 78 -8.2 -4.15565 | TGGCGTTCGGCTCAG CCCG GAC CGGG TTTTGGCATCGTCAA Daro_3602 3865840 - 3864494 - | AAA ATPase, central region TERM 3559 3865708 - 3865739 + g 80 -10 -4.08216 | gap 1, opp_overlap 3865724 CTAGGCTCGGCGGCG GCC-GCTCGCCAGGC AAG GCCGGGCTGGCCGGC TTTTCGGCAAAGTAG Daro_3603 3867315 - 3865825 - | hypothetical protein TERM 3560 3866887 - 3866907 + g 82 -14.7 -3.22223 | overlap 3866879 CGGCGAGGCGCTCCA CTGGCGGGC TTC GTCCGCCAG TTGCTGCTGCAGTTC Daro_3604 3870154 - 3867329 - | hypothetical protein Daro_3605 3872764 - 3870173 - | hypothetical protein TERM 3561 3872125 - 3872093 - G 88 -13.3 -3.61178 | opp_overlap 3872112 GCGATCGACGGCAAA GGCGATGTCGGCCGC GAC GCGGTCGGCATCGGC ATCCGGCTGCAGGTC Daro_3606 3875801 - 3872778 - | 50S ribosomal protein L13E TERM 3562 3873755 - 3873780 + g 72 -11.7 -3.28712 | overlap 3873778 TGTCGAGGGCGAATT CCTCCGGCGCC GCGG GGCGCCAGTGG TTGTCGCAGAGCACC TERM 3563 3873926 - 3873940 + g 80 -3.5 -5.10933 | overlap 3873909 CTTCGTCGGGATAGC TCGGC AGCAG GCTGA TTTTCTTTTCGCTGA TERM 3564 3874240 - 3874260 + g 71 -8.1 -4.12188 | opp_overlap 3874233 3874234 GTGACAAAGCCGCTG CGCGCAGCC GGT GGCGGCACG TTTTCCCGCTGATAG TERM 3565 3874663 - 3874674 + g 70 -3.6 -4.66833 | GGCTGCGGGCCGAAG GGCT GGAA GGCC TTTTTCGGGTTGAGG TERM 3566 3875754 - 3875770 + g 75 -7.9 -4.19735 | overlap 3875755 GCGGTCTTCCTGGCT CTGCCCG AGC CGGGCAA TTTCGTTTTGCAGGA Daro_3607 3876254 - 3875808 - | tail lysozyme, putative Daro_3608 3876570 - 3876292 - | PAAR Daro_3609 3878314 - 3876590 - | Rhs element Vgr protein TERM 3567 3877878 - 3877923 + g 74 -6.7 -4.3898 | gap 1, overlap 3877887 GCTTCGACATCGGTG CCGACACCGGCCGCGCCG-AGC ACG GCTTCGATGATGTCGCTGTCGG TTTTATCGAAATGGT TERM 3568 3878359 - 3878342 - R 72 -7.7 -3.9122 | gap 1 CAGTGGCGGAAAGAA GAGCTCGG TGC CCG-GCTC GATATGCCGGAAATC Daro_3610 3879058 - 3878318 - | hypothetical protein Daro_3611 3879230 - 3879060 - | hypothetical protein Daro_3612 3879688 - 3879245 - | phage tail region protein Daro_3613 3880149 - 3879709 - | phage tail region protein Daro_3614 3882129 - 3880180 - | putative phage tail sheath protein FI Daro_3615 3883142 - 3882144 - | hypothetical protein Daro_3616 3883711 - 3883139 - | hypothetical protein Daro_3617 3884374 - 3885210 + | peptidase C14, caspase catalytic subunit p20 TERM 3569 3885285 - 3885269 - g 74 -12.3 -3.21395 | overlap 3885267 AGCGCCTCTACAAGA TTCGCGG CAG CCGCGAA GACGTCGTTCGCCAC TERM 3570 3885388 - 3885417 + G 71 -7.9 -4.0162 | gap 1, overlap 3885389 GAGGTCAGCGGCGAC ACCGTTGTCCGGGT CGA ACTC-GACAACGGC TTTGTGCTGTGGAGC TERM 3571 3887125 - 3887158 + G 72 -12.4 -3.08464 | gap 1, overlap 3887127 TCCGGCCAGCCGCTG CG-CCTGGTCGCCCA CTCGA TGGGCGGCCTGGTCG TTCGATCGATGATCG TERM 3572 3887127 - 3887155 + G 73 -13.8 -2.75712 | overlap 3887125 CGGCCAGCCGCTGCG CCTGGTCGCCCA CTCGA TGGGCGGCCTGG TCGTTCGATCGATGA TERM 3573 3889836 - 3889821 - g 70 -10.4 -3.50853 | TCCTGCCAACCAGAA GGCCAG CTGG CTGGCC CGGGCCGACGTGCAG TERM 3574 3890494 - 3890473 - g 74 -6.5 -4.30576 | gap 1, overlap 3890453 3890474 3890475 GCGCCACCACGAAAA CGCGGCGAGG CAG CATCGCCG-G CACCAGGCGTCGCCG Daro_3618 3885247 - 3890664 + | hypothetical protein TERM 3575 3890707 - 3890682 - g 77 -3.1 -5.00616 | overlap 3890684 CCGCGTCCGAAAAAA GCCCCCGCTGC GCTT GAAGCGAAGCC CAGAATCTTCCGCCG Daro_3619 3890661 - 3891326 + | hypothetical protein TERM 3576 3891934 - 3891976 + G 78 -14.1 -3.24188 | gap 2 CACCGCGCTATGCCT CGGCGGCGCCA-CC-CGCGCC GTC GGCCCCTGGCTGGCGCCGCTG TTCATCCTCCTGTGC TERM 3577 3892845 - 3892818 - g 73 -9.9 -3.6608 | gap 1, opp_overlap 3892825 3892840 ACGACCGCACCGAAA TGGCT-GCCGCC CAGGC GGCGACGAGCCA GGCACCGGCCGGGCG Daro_3620 3891380 - 3892945 + | hypothetical protein Daro_3621 3893253 - 3894494 + | GGDEF TERM 3578 3894923 - 3894894 - g 78 -2.1 -5.03747 | gap 1, opp_overlap 3894895, overlap 3894884 3894895 AAACGCGCCAAAAAA GCGGCCTTGCAC GACCAGG ATGCA-GGCCGT CGTTCCGCATCTGCC Daro_3622 3894534 - 3895046 + | hypothetical protein TERM 3579 3895112 - 3895128 + F 79 -12.3 -3.11999 | overlap 3895115 ACGACCAGCCAGTTC CAACCCG CCA CGGGTTG TTAGCTGCATTTGAT Daro_3623 3895198 - 3896949 + | diguanylate cyclase with PAS/PAC sensor Daro_3624 3898040 - 3897003 - | fructose-1,6-bisphosphate aldolase Daro_3625 3899176 - 3898157 - | glyceraldehyde-3-phosphate dehydrogenase TERM 3580 3898603 - 3898616 + g 74 -5.9 -4.53705 | overlap 3898578 AGTCCTTGCCGGATG GGCCG TCGA CGGTC TTTTGTGTGGCGGTT TERM 3581 3899253 - 3899213 - R 73 -11.8 -2.72558 | gap 1, opp_overlap 3899213 3899208 AGAATTCTTGAACGA GCCGGCCCGTTACACCCGT AGCA ACGGGCGTT-CGGGACAGC TTGAATTGGGTTTGG Daro_3626 3901370 - 3899298 - | transketolase TERM 3582 3901412 - 3901429 + r 73 -11.3 -2.80966 | opp_overlap 3901424, overlap 3901420 3901424 GCTTGCAGTTCGCCC TCCCCGT GGAA ACGGGGA TCCTGTTCCTTGCAT Daro_3627 3902352 - 3901480 - | phosphoribulokinase/uridine kinase Daro_3628 3903449 - 3902376 - | fructose-1,6-bisphosphatase Daro_3629 3903629 - 3904330 + | HAD family hydrolase TERM 3583 3904740 - 3904723 - g 84 -5.5 -5.00616 | gap 1 TCCGTGCTCAAAAAA GCCCAGGC CAA GCC-GGAC GCCATCTACAAGGTC Daro_3630 3904459 - 3904824 + | hypothetical protein TERM 3584 3904980 - 3904957 - T 72 -11 -3.0792 | gap 1, opp_overlap 3904957, overlap 3904947 GAATATTTGAGGTAA CCAG-CCTGCC TAG GGCAGGTCCGG TTGACTGAGAAGCTA Daro_3631 3905649 - 3904993 - | hypothetical protein Daro_3632 3905991 - 3906605 + | hypothetical protein Daro_3633 3907862 - 3906612 - | hypothetical protein TERM 3585 3906802 - 3906812 + g 75 -8.2 -4.1899 | opp_overlap 3906801 3906802 TGCTCGTCAATAAAT GCGG CCA CCGC TTTTGAGTCGAATCC TERM 3586 3907752 - 3907805 + g 76 -5.8 -4.59773 | overlap 3907753 GCCATCGGCTTCCAT CCGG-GCGATGTCGGCCGGCGTCAGG ATGC CCTG-CGCCAGCCCGAAGCGCACCGC TTTTTCGAAGTAGGG Daro_3634 3908626 - 3907865 - | hypothetical protein TERM 3587 3908121 - 3908133 + g 84 -3.4 -5.26875 | overlap 3908120 TCGTGCAGGGCTTCG TCGA TCTCT TCGA TTTTTTCGTTGAGCC TERM 3588 3908354 - 3908332 - G 86 -13.5 -3.53012 | opp_overlap 3908318 CCTCGTCGCGGTAAA GCACGGCAT TCATC ATGCCGTGC AGGGCGGCGTGGGTC Daro_3635 3909250 - 3908675 - | hypothetical protein TERM 3589 3909079 - 3909063 - G 78 -4.3 -4.8622 | TTGGGGAAGGAAAAA CCGTCGT AAA ACACCGG CACCACCATCTCCGG Daro_3636 3909525 - 3909247 - | heat shock protein DnaJ, N-terminal Daro_3637 3909856 - 3911235 + | ribulose bisphosphate carboxylase TERM 3590 3911694 - 3911682 - f 74 -10.5 -3.14944 | opp_overlap 3911693 GAGTAGCACAGGGAA CCGGC GCA GCCGG CACCGACCCTGGGTC TERM 3591 3911693 - 3911712 + F 74 -2.8 -5.00851 | gap 1, opp_overlap 3911682, overlap 3911697 3911698 GGAACCGGCGCAGCC GGC-ACCGA CCC TGGGTCGCC TTTTCTTTGCTTACT Daro_3638 3911849 - 3912799 + | LysR family transcriptional regulator TERM 3592 3913584 - 3913552 - g 78 -4.8 -4.84359 | gap 1, overlap 3913554 CGACGGCGAGAAAAA GC-TGGCCGACATGA TGGA CCGCATCGGCCATGC CAAGTCGCCGACCGA Daro_3639 3912836 - 3914167 + | hypothetical protein hemH 3914242 - 3915174 + | phosphoribosylaminoimidazole-succinocarboxamide synthase TERM 3593 3915191 - 3915221 + T 100 -19.9 -4.19238 | opp_overlap 3915197, overlap 3915197 CGACCGTCACTTCAA GAAAAACGCCCGC ATGAA GCGGGCGTTTTTC TTTTGCGCTTCCGAA TERM 3594 3915215 - 3915197 - T 100 -13.1 -5.08601 | opp_overlap 3915191 3915197 TCACTTCAAGAAAAA CGCCCGC ATGAA GCGGGCG TTTTTCTTTTGCGCT TERM 3595 3915197 - 3915215 + T 100 -13.1 -5.46706 | opp_overlap 3915197, overlap 3915191 TCACTTCAAGAAAAA CGCCCGC ATGAA GCGGGCG TTTTTCTTTTGCGCT TERM 3596 3915369 - 3915347 - T 74 -10.4 -3.45832 | opp_overlap 3915346 3915347 GAATGCCAGAATTAA GCTGCGCCGC GTA GCTGCGCTGC CTTTGGTGATGTCAG Daro_3641 3916127 - 3915381 - | hypothetical protein Daro_3642 3916765 - 3916187 - | hypothetical protein Daro_3643 3917390 - 3916767 - | hypothetical protein Daro_3644 3918103 - 3917519 - | hypothetical protein Daro_3645 3918396 - 3919169 + | integral membrane protein TERM 3597 3919192 - 3919209 + F 100 -9.8 -4.8622 | opp_overlap 3919191 3919192 CTCCCTTTCCCAAAC GGGCGG CGCAGA CCGCCC TTTTTCATTGCCCCG TERM 3598 3919209 - 3919192 - f 70 -10.5 -2.71712 | opp_overlap 3919192, overlap 3919191 CTCCCTTTCCCAAAC GGGCGGC GCAG ACCGCCC TTTTTCATTGCCCCG TERM 3599 3919841 - 3919825 - g 72 -11.5 -3.36289 | overlap 3919794 GACGACGTCAAGGAA GCCGCGA AGA CCGCGGC CGAAAAAGCCGGCGT Daro_3646 3919231 - 3921285 + | oligopeptidase A TERM 3600 3921521 - 3921499 - g 80 -3.3 -5.14563 | opp_overlap 3921482, overlap 3921482 TTCGCCACCAAAAAA GCGGCCGAA GCATT TCCGGTCAC CTTGTACACCTCAGC Daro_3647 3921310 - 3921798 + | hypothetical protein Daro_3648 3921795 - 3922559 + | exodeoxyribonuclease III Daro_3649 3922566 - 3923234 + | cyclic nucleotide-binding: regulatory protein, Crp Daro_3650 3923307 - 3923498 + | hypothetical protein TERM 3601 3923513 - 3923523 + F 72 -5.4 -4.56597 | opp_overlap 3923502 3923506 ATCAGACAGCACAAG GCTT TCC AAGC TTTTTGCAGAAGGCG TERM 3602 3923535 - 3923559 + F 90 -7.8 -4.91573 | gap 1, opp_overlap 3923535, overlap 3923529 AAGCTTTTTGCAGAA GGCGG-ACAGG GTGA CCTGAGCCGCC TTTTTCGTCTGTTTT Daro_3651 3923753 - 3924745 + | hypothetical protein Daro_3652 3925341 - 3925919 + | resolvase, N-terminal Daro_3653 3927400 - 3925937 - | ATPas TERM 3603 3926042 - 3926054 + g 70 -3.4 -4.63928 | GCATTTCTTCAATAG CGTT TCAAC AACG TTTTTAAGCTGATAT TERM 3604 3926139 - 3926128 - G 81 -5.8 -4.78107 | TAGCAGTATCAAAAA CTCC AAGA GGAG CACTCGACAAAACAA TERM 3605 3926207 - 3926217 + g 70 -4 -4.66318 | opp_overlap 3926207 CTGGCTCGATTCAAA TTTG GTC CAAA TTTTCTTCGGGTAAT TERM 3606 3926570 - 3926560 - G 74 -5.4 -4.44277 | TATCAAAATGCAAAA CCTT TTG AAGG TCATCCGATGACGAA Daro_3654 3928682 - 3927660 - | Phage integrase Daro_3655 3928741 - 3928860 + | hypothetical protein TERM 3607 3928904 - 3928879 - T 81 -10.5 -3.57561 | opp_overlap 3928885, overlap 3928885 GGCCAAGGCCCCAAA CAAAAACCCGC CTTG GCGGGTTTTTT CATTCTCGGCGAGCG TERM 3608 3928898 - 3928885 - T 100 -9.5 -5.27335 | opp_overlap 3928885, overlap 3928879 GGCCCCAAACAAAAA CCCGC CTTG GCGGG TTTTTTCATTCTCGG TERM 3609 3928885 - 3928898 + T 100 -9.5 -5.32944 | opp_overlap 3928885 3928879 GGCCCCAAACAAAAA CCCGC CTTG GCGGG TTTTTTCATTCTCGG Daro_3656 3929694 - 3928927 - | dimethyladenosine transferase TERM 3610 3929454 - 3929478 + g 75 -2.8 -5.00616 | gap 1, overlap 3929458 CATCGCCCTCATGAA CGGTCATCCGC TCTG GCGTATG-CTG TTTTTTCAGCCGGGC Daro_3657 3930680 - 3929691 - | pyridoxal phosphate biosynthetic protein PdxA TERM 3611 3930650 - 3930626 - G 74 -6.9 -4.42806 | overlap 3930628 CCAGCCGCAAACAAA GTTCCGGCCCG ATG CCGGCCGGTTC GCCGCTGGTGACGGC Daro_3658 3931996 - 3930680 - | PpiC-type peptidyl-prolyl cis-trans isomerase TERM 3612 3931217 - 3931176 - G 71 -7.3 -4.15565 | gap 1 TTGACGATGTGAAAA CCAGCC-GATGAACGCAGCA GGT CGCTGACTTCACCCGACTGG AGGCGCGATCCGGCT Daro_3659 3934542 - 3931993 - | organic solvent tolerance protein TERM 3613 3934299 - 3934321 + g 78 -2.7 -5.06414 | gap 2, overlap 3934301 CTGGAGCAAGCATCG GC-GCCA-CTG GTT CGGCTGGCTGC TTTTTCTTGCCCAGC TERM 3614 3935405 - 3935389 - g 76 -9.3 -4.11216 | opp_overlap 3935389 CCGCTACTGGGAAAA GGCCCGC GCT GCCGGCC TGCCGGTGCGCGAGG Daro_3660 3934634 - 3935659 + | aminoglycoside phosphotransferase TERM 3615 3936145 - 3936158 + G 84 -5.9 -5.00884 | GCAAACCCTCACTTA CGCCG GCGT CGGTG TTTTTTCGCCCACCT Daro_3661 3935666 - 3936337 + | nucleotidyl transferase Daro_3662 3936334 - 3937632 + | aminopeptidase P TERM 3616 3938617 - 3938589 - g 73 -5.1 -4.68994 | opp_overlap 3938590 3938591, overlap 3938590 3938591 ACCACTACGCAAAAA TCCGCCGCCTCGA CCG CCAAGGCAGCGCT TTTTTCACCGACCAG TERM 3617 3938590 - 3938616 + G 77 -3.5 -5.00616 | opp_overlap 3938589 3938590 3938591, overlap 3938591 CCACTACGCAAAAAT CCGCCGCCTCG ACCGC CAAGGCAGCGC TTTTTTCACCGACCA Daro_3663 3937625 - 3938770 + | 2-octaprenyl-6-methoxyphenol hydroxylase TERM 3618 3939113 - 3939143 + G 74 -12.4 -3.26319 | overlap 3939098 CGCCGGCAAGGTCAA GGCCGGCGCCTGGC TGA GCTTCGCGCTGGCC TTCCTGTGCGGCATT TERM 3619 3939267 - 3939281 + G 88 -6.4 -4.88795 | overlap 3939261 GCCTACGGGCCGCTT GGCGAA GTT TTCGTC TTTATTTTCTTCGGT Daro_3664 3938838 - 3939710 + | 1,4-dihydroxy-2-naphtoate prenyltransferase TERM 3620 3940529 - 3940509 - g 78 -6.8 -4.70266 | gap 1 AACACTATCTAAAAA CCGGCGAGC ACCT GC-CACCGG CCGAGGTCATGGAGA Daro_3665 3939779 - 3940792 + | dihydrouridine synthase TIM-barrel protein nifR3 Daro_3666 3940789 - 3941022 + | helix-turn-helix, Fis-type Daro_3667 3941112 - 3942704 + | phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase Daro_3668 3942732 - 3944009 + | phosphoribosylamine--glycine ligase TERM 3621 3944034 - 3944067 + F 88 -11 -4.05788 | opp_overlap 3944033 3944030 3944025, overlap 3944035 GCAAAAGCAACTCAG ACGGGCGACTCATT CTGGTC AATGAGCCGCCCGA TTTCATTTCAGGAAA TERM 3622 3944035 - 3944066 + F 93 -14.5 -3.03151 | opp_overlap 3944033 3944030 3944025, overlap 3944034 CAAAAGCAACTCAGA CGGGCGACTCATT CTGGTC AATGAGCCGCCCG ATTTCATTTCAGGAA Daro_3669 3944087 - 3944983 + | coproporphyrinogen III oxidase TERM 3623 3945010 - 3945026 + T 95 -9.4 -5.0133 | ACTTGCCTTTGACGA CCCGGA CCCGT TCCGGG TTTTTTACGCCCATC Daro_3670 3945226 - 3944987 - | hypothetical protein Daro_3671 3946440 - 3945256 - | HemY, N-terminal TERM 3624 3945896 - 3945906 + g 74 -5.4 -4.56597 | opp_overlap 3945887 ATATGACGCCCCTGC TTGC CTT GCAA TTTTTCCAGGGCAGC TERM 3625 3946111 - 3946123 + g 72 -2.6 -4.7373 | overlap 3946079 CGTACCGGCGCCATG GGCT TCCGC GGCC TTTTTCATGGCCTGA Daro_3672 3947483 - 3946437 - | hypothetical protein Daro_3673 3948262 - 3947480 - | uroporphyrinogen-III synthase TERM 3626 3948191 - 3948152 - G 71 -9.2 -3.78329 | gap 1, overlap 3948146 3948154 3948157 TTCCAGCAACGGAAA GACC-AGCGGCTTGCCGCC GGC GGCGGCAATCGCCTCGGCC AGCGGCGCTGCCTGC TERM 3627 3948171 - 3948154 - G 70 -10.5 -3.47526 | overlap 3948146 3948152 3948157 CCAGCAACGGAAAGA CCAGCGG CTTG CCGCCGG CGGCGGCAATCGCCT Daro_3674 3949194 - 3948259 - | porphobilinogen deaminase TERM 3628 3949880 - 3949899 + G 71 -7.8 -4.09864 | TGGCCGAGCTTGGCT GGCCAGTG ACAG CACTGGAC TTTTCACCGCTGGCT TERM 3629 3950096 - 3950109 + G 76 -9.5 -4.0156 | TGCTGCCGAGCGGCG CCCGG CTGG CCGGG TTCTTCTTCCTCTGC Daro_3675 3949672 - 3950277 + | thiopurine S-methyltransferase TERM 3630 3950673 - 3950691 + G 70 -10.2 -3.53811 | CCGATGGCTACTTCA CCCAGTGC GAG GCACAGGG TTTCCGCCGGATCAC TERM 3631 3951526 - 3951470 - g 91 -8 -4.7254 | opp_overlap 3951481 ACCGTCTATGAAAAA GGCGCCGAAGTCATC-CGGATGATCCAG ACC CTG-ATCGGCCGCGATGCTTTCCGCGCC GGGATGGATGAATAC Daro_3676 3950318 - 3952924 + | peptidase M, neutral zinc metallopeptidase, zinc-binding site TERM 3632 3953067 - 3953106 + F 74 -6.4 -4.56597 | opp_overlap 3953074, overlap 3953069 3953074 3953103 AAGACCCCAGGCCGT CCAGAAAGCCCCGTAC CTCCCCCT GTACGGGGCTTTCGCC TTTTTGCGGCAGGCG TERM 3633 3953069 - 3953104 + F 81 -13.4 -2.60032 | opp_overlap 3953074, overlap 3953067 3953074 3953103 GACCCCAGGCCGTCC AGAAAGCCCCGTAC CTCCCCCT GTACGGGGCTTTCG CCTTTTTGCGGCAGG TERM 3634 3953074 - 3953099 + F 88 -11.9 -3.8046 | opp_overlap 3953074, overlap 3953069 3953067 CAGGCCGTCCAGAAA GCCCCGTAC CTCCCCCT GTACGGGGC TTTCGCCTTTTTGCG TERM 3635 3953099 - 3953074 - f 90 -11.9 -3.86015 | opp_overlap 3953069 3953067 3953074 CAGGCCGTCCAGAAA GCCCCGTAC CTCCCCCT GTACGGGGC TTTCGCCTTTTTGCG Daro_3677 3953143 - 3953634 + | ribonuclease H Daro_3678 3954052 - 3953669 - | hypothetical protein Daro_3679 3954998 - 3954210 - | LytR/AlgR family transcriptional regulator TERM 3636 3954246 - 3954266 + gr 85 -8.9 -4.56597 | overlap 3954247 CTTGGCGGCAGCCCA TTGCCGGCG ACT CACCGGCAG TTTTTCCGGGACACC TERM 3637 3954247 - 3954265 + gr 72 -10.2 -3.33744 | overlap 3954246 TTGGCGGCAGCCCAT TGCCGGCG ACT CACCGGCA GTTTTTCCGGGACAC Daro_3680 3955990 - 3954965 - | histidine kinase internal region Daro_3681 3956048 - 3957436 + | argininosuccinate lyase TERM 3638 3957456 - 3957479 + F 100 -19.6 -5.81412 | opp_overlap 3957456 CGCATTCGCCTGAAA GGCCGCCAGC CAAC GCTGGCGGCC TTTTTTTTGCGTCAA TERM 3639 3957479 - 3957456 - f 100 -19.6 -3.53811 | opp_overlap 3957456 CGCATTCGCCTGAAA GGCCGCCAGC CAAC GCTGGCGGCC TTTTTTTTGCGTCAA TERM 3640 3957737 - 3957727 - g 74 -5.4 -4.46112 | GTCTATGCAAAGAAA TCCT GCA AGGA ACTTGGCATTCCCGC Daro_3682 3957577 - 3957954 + | hypothetical protein TERM 3641 3958006 - 3957968 - T 71 -11.1 -2.84574 | opp_overlap 3957973 3957979, overlap 3957979 GAGCCGAACGAACGA GCAATAAAAAACCGGGG ACCAG CCCCGGTTTTTCTTTTC TGGAACCTGAGTGAT TERM 3642 3957973 - 3958001 + T 95 -11.8 -4.37886 | opp_overlap 3957968 3957979, overlap 3957979 GAACGAACGAGCAAT AAAAAACCGGGG ACCAG CCCCGGTTTTTC TTTTCTGGAACCTGA TERM 3643 3957995 - 3957979 - T 100 -10.8 -5.52023 | opp_overlap 3957973 3957979, overlap 3957968 ACGAGCAATAAAAAA CCGGGG ACCAG CCCCGG TTTTTCTTTTCTGGA TERM 3644 3957979 - 3957995 + T 100 -10.8 -5.54907 | opp_overlap 3957979 3957968, overlap 3957973 ACGAGCAATAAAAAA CCGGGG ACCAG CCCCGG TTTTTCTTTTCTGGA Daro_3683 3958341 - 3958021 - | glutaredoxin-like protein TERM 3645 3958260 - 3958250 - G 79 -8.2 -4.56597 | GCCGTGGCCGAAAAA CCGC ACT GCGG GAAACGGGCATCACC Daro_3684 3959167 - 3958355 - | modification methylase HemK Daro_3685 3959287 - 3960144 + | periplasmic binding protein-related protein TERM 3646 3960892 - 3960880 - g 85 -9.1 -4.59853 | opp_overlap 3960885, overlap 3960882 CCAACGCTGCAAAAA GCCAG TTC CTGGC CAATATGAGCCACGA Daro_3686 3960141 - 3962003 + | response regulator receiver:ATP-binding region, ATPase-like:histidine kinase, HAMP region:histidine kinase A, N-terminal prfA 3963102 - 3962020 - | peptide chain release factor 1 Daro_3688 3963234 - 3964865 + | response regulator receiver modulated diguanylate cyclase hemA 3966112 - 3964862 - | glutamyl-tRNA reductase TERM 3647 3966164 - 3966137 - R 71 -9.1 -3.53012 | opp_overlap 3966129 CGTGGGCGGTCGAAA CGGGGGCCGAT TATAAC ATCCACCCCCG CTTGCCCTATTTGCC Daro_3690 3967252 - 3966185 - | sulphate transport system permease protein 1 TERM 3648 3967039 - 3967018 - G 70 -3.6 -4.62471 | CGTAATGCTGAAAAA CGAAACCG ACGTTG CGGTCACG AGCGTGCAGATGCGT Daro_3691 3968115 - 3967252 - | sulphate transport system permease protein 2:Sulfate ABC transporter, permease protein CysW Daro_3692 3968987 - 3968112 - | sulphate transport system permease protein 2:Sulfate ABC transporter, permease protein CysT TERM 3649 3968970 - 3968927 - G 80 -10.2 -4.1399 | gap 1, opp_overlap 3968928, overlap 3968930 GGATCGAGAGATAAA CCAGCGTATAGCCCAGCGCCA GGC CGAAGCCGGGCAACACGC-GG TGAGTTTTTGCCGCC Daro_3693 3969985 - 3968987 - | thiosulphate-binding protein Daro_3694 3970174 - 3970740 + | OmpA/MotB TERM 3650 3970757 - 3970790 + T 100 -18.3 -3.53091 | opp_overlap 3970763, overlap 3970763 CAGAAGAACCCGCCA GCAAAAGGCCTCGCT AAAC AGCGAGGCCTTTTTC TTTGGGCGAAGCGAT TERM 3651 3970784 - 3970763 - T 100 -15.9 -4.25848 | opp_overlap 3970757 3970763 AACCCGCCAGCAAAA GGCCTCGCT AAAC AGCGAGGCC TTTTTCTTTGGGCGA TERM 3652 3970763 - 3970784 + T 100 -15.9 -5.27335 | opp_overlap 3970763, overlap 3970757 AACCCGCCAGCAAAA GGCCTCGCT AAAC AGCGAGGCC TTTTTCTTTGGGCGA TERM 3653 3971136 - 3971104 - T 100 -14.9 -3.48689 | opp_overlap 3971110, overlap 3971110 AAACTCACATCACAA CAAAAATGGCCCGAC GGT GCCGGGCCATTTGCG AGATGCGATAAAAAG TERM 3654 3971130 - 3971110 - T 100 -14.7 -5.2291 | opp_overlap 3971110, overlap 3971104 ACATCACAACAAAAA TGGCCCGAC GGT GCCGGGCCA TTTGCGAGATGCGAT TERM 3655 3971110 - 3971130 + T 86 -12.5 -3.55563 | opp_overlap 3971110 3971104 ACATCACAACAAAAA TGGCCCGAC GGT GCCGGGCCA TTTGCGAGATGCGAT Daro_3695 3974050 - 3971258 - | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) Daro_3696 3974147 - 3974575 + | hemerythrin HHE cation binding region Daro_3697 3974815 - 3975129 + | hypothetical protein Daro_3698 3975910 - 3976383 + | hypothetical protein TERM 3656 3977312 - 3977280 - g 71 -8.9 -3.75024 | overlap 3977277 3977282 GGCTATGACGAAGAA GACGCGCTGGTCGTC TTC GCCGCCCAGCTCGGC CTGGCAATGCAGCAT TERM 3657 3977310 - 3977282 - g 70 -10.1 -3.45742 | overlap 3977277 3977280 CTATGACGAAGAAGA CGCGCTGGTCGTC TTC GCCGCCCAGCTCG GCCTGGCAATGCAGC Daro_3699 3976380 - 3977717 + | hypothetical protein Daro_3700 3977853 - 3978815 + | dehydrogenase, E1 component Daro_3701 3978823 - 3979836 + | transketolase, central region:transketolase, C-terminal Daro_3702 3979818 - 3980369 + | putative lipoprotein TERM 3658 3980561 - 3980530 - T 100 -21 -3.20382 | opp_overlap 3980533 3980536, overlap 3980533 3980536 TGCCACACCCATCAA CAAGAAGCCCCGCA TCAT CGCGGGGCTTCTTG TCAAAACCTATCCGA TERM 3659 3980558 - 3980533 - T 100 -16.9 -3.74361 | opp_overlap 3980533 3980536, overlap 3980530 3980536 CACACCCATCAACAA GAAGCCCCGCA TCAT CGCGGGGCTTC TTGTCAAAACCTATC TERM 3660 3980533 - 3980558 + T 100 -16.2 -3.29829 | opp_overlap 3980530 3980533 3980536, overlap 3980536 CACACCCATCAACAA GAAGCCCCGC ATCATC GCGGGGCTTC TTGTCAAAACCTATC TERM 3661 3980536 - 3980555 + T 91 -12.1 -3.79113 | opp_overlap 3980533 3980530 3980536, overlap 3980533 ACCCATCAACAAGAA GCCCCGC ATCATC GCGGGGC TTCTTGTCAAAACCT TERM 3662 3980555 - 3980536 - T 93 -12.8 -3.99775 | opp_overlap 3980536 3980533, overlap 3980533 3980530 ACCCATCAACAAGAA GCCCCGCA TCAT CGCGGGGC TTCTTGTCAAAACCT Daro_3703 3981803 - 3980601 - | Rh-like protein/ammonium transporter TERM 3663 3981202 - 3981182 - G 77 -11.1 -3.6149 | AGCCAACAATCAGAA TCCATGCCC CCA GGGCAAGGA AGGGGATTGATGAAG Daro_3704 3983179 - 3981962 - | MltA:3D Daro_3705 3983226 - 3984116 + | hypothetical protein TERM 3664 3984478 - 3984447 - g 100 -10.8 -5.03314 | gap 1 TCGAGTGGCAAAAAA CAGGA-GGGGCCGCC AGC GTCGCCCCCATCCTG CCGGCCAACGACCCG Daro_3706 3984113 - 3985057 + | hypothetical protein Daro_3707 3985238 - 3985041 - | hypothetical protein TERM 3665 3985183 - 3985199 + g 77 -11.5 -3.57561 | opp_overlap 3985165 3985164 CGCCACGGGTTCTCC GGCGCCC ACA GGGCGTC TTTACCGCATTGCGG Daro_3708 3985996 - 3985238 - | hypothetical protein Daro_3709 3986680 - 3986057 - | dephospho-CoA kinase TERM 3666 3986509 - 3986458 - G 100 -8.7 -4.73388 | gap 2 AAGGGTCAGCAAAAA CCTGTCGGCGCA--TGACGGCGCGA TCCA TCGCGCCGTCCGCCGTGGCGACAAG CGCCCCGAACTCGGC Daro_3710 3987405 - 3986677 - | hypothetical protein Daro_3711 3988774 - 3987410 - | tryptophan synthase subunit beta TERM 3667 3988183 - 3988208 + g 74 -12.5 -3.19157 | gap 1, opp_overlap 3988151 CCTGATTGTCGGGAT CGGCGGCCAGCG CAG CGC-GGCCGGCG TTGGTCAGATTGGTC TERM 3668 3988916 - 3988891 - H 81 -11.2 -3.62255 | opp_overlap 3988890 3988889, overlap 3988887 CGGAACAACAAGCAA GGCAAGCAGT TAAAGT ACTGCCTGCC CATCTTTTTCGTTAC Daro_3712 3988943 - 3989497 + | hypothetical protein Daro_3713 3989494 - 3990708 + | hypothetical protein TERM 3669 3990958 - 3990942 - g 93 -7.9 -5.05782 | overlap 3990943 ACCGAGGCCAAAAAA CCGGCGA AAT TCGCCGT CCTGGCCTACCGCCC TERM 3670 3990957 - 3990943 - g 77 -11.4 -3.62746 | overlap 3990942 CCGAGGCCAAAAAAC CGGCGA AAT TCGCCG TCCTGGCCTACCGCC Daro_3714 3990834 - 3993920 + | PAS Daro_3715 3995538 - 3993886 - | twin-arginine translocation pathway signal TERM 3671 3994494 - 3994484 - G 78 -2.4 -5.07652 | CGCGGCAAAACAAAA GCCG GTG CCGC CCAAATCAGTTGCCG TERM 3672 3995483 - 3995460 - G 72 -13.8 -2.57564 | overlap 3995459 CGACCGGGGCACAAC CGGCGAGGGC AGCC GCCCCCACCG CGCAAAGAAATTCCC TERM 3673 3995509 - 3995521 + g 76 -9.1 -4.07455 | opp_overlap 3995496 3995495, overlap 3995497 TTCCCGGCGGCTGGT GCCAG CCC CTGGC TTTGTGGTGTTAGTC Daro_3716 3996430 - 3995531 - | cell division protein FtsX TERM 3674 3995799 - 3995772 - G 91 -7.6 -4.81083 | CCGAAGTAGTAAAAA GGCCGGCGAATG AAGG CATCCGTCGCCC CGATCATCCGCGCCA Daro_3717 3997080 - 3996427 - | cell division ATP-binding protein FtsE Daro_3718 3998162 - 3997077 - | signal recognition particle-docking protein FtsY TERM 3675 3997321 - 3997342 + g 71 -5.7 -4.42386 | opp_overlap 3997313, overlap 3997326 AGCACAAGCAGGGTT TCGTGCGGG CCTT CCGGCTCGA TTTTCTGGATCACGC TERM 3676 3998007 - 3998030 + g 75 -3 -5.00884 | overlap 3997999 3997998 3998009 CTTTTCAGCCGGAAC TTCGGCCTTG GTCT CGGAGCCGGA TTTTTTCAGGAAACT Daro_3719 3998184 - 3999542 + | peptidase M16, C-terminal:peptidase M16, N-terminal TERM 3677 3999936 - 3999950 + G 78 -2.7 -5.08824 | overlap 3999916 3999915 3999948 ATGCGGGCCTGGCAG CCCCG CTTAA CGGAG TTTTTTGCATGAAAA Daro_3720 3999555 - 3999962 + | hypothetical protein TERM 3678 4000629 - 4000618 - g 70 -4.4 -4.43844 | CCAGGAGGCAGAAAA GCTT GCCG AAGC CATCGCGTCCGGACT Daro_3721 3999959 - 4001248 + | peptidase M16, C-terminal:peptidase M16, N-terminal TERM 3679 4001717 - 4001707 - g 88 -6.8 -4.99568 | overlap 4001708 GAATACGAAATAAAA TCGC TTG GCGA TTGGCGCACAGTGCG Daro_3722 4001245 - 4001799 + | hypothetical protein Daro_3723 4001796 - 4002290 + | phosphopantetheine adenylyltransferase Daro_3724 4002308 - 4002565 + | 4Fe-4S ferredoxin, iron-sulfur binding TERM 3680 4002590 - 4002606 + T 100 -13.7 -5.45652 | opp_overlap 4002590 GATACCAATAAAAAA CCCGCGA ATT TCGCGGG TTTTTTATTGCCCGT TERM 3681 4002606 - 4002590 - T 100 -13.7 -5.5353 | opp_overlap 4002590 GATACCAATAAAAAA CCCGCGA ATT TCGCGGG TTTTTTATTGCCCGT Daro_3725 4004577 - 4002628 - | hypothetical protein TERM 3682 4002708 - 4002721 + g 78 -4.5 -4.82901 | overlap 4002709 CTTCCAACGCATCGA TCTGC TGTA GCAGG TTTTTCTCGACGCCG TERM 3683 4003327 - 4003311 - G 78 -2.1 -5.02074 | overlap 4003313 4003314 TCAGCGTCGAAAAAA CACTGCG CAC CGCATAG TAGCGCTGCAAGCCG Daro_3726 4005478 - 4004645 - | formamidopyrimidine-DNA glycosylase / DNA-(apurinic or apyrimidinic site) lyase TERM 3684 4006397 - 4006383 - g 76 -5.6 -4.68593 | CTGATCAGCGAAAAA CGCTAC AGC GAAGCG CGCCAGCATTTTGAT Daro_3727 4005579 - 4007297 + | TPR repeat-containing protein Daro_3728 4007294 - 4007866 + | Outer membrane lipoprotein LolB Daro_3729 4007887 - 4008711 + | 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase TERM 3685 4008872 - 4008896 + F 100 -13.6 -4.53034 | CAGCCAAAATTTCCT TCGGGCAGGT CACAA GCCTGCCCGA TTTTCATTGTATCGG Daro_3730 4008955 - 4009905 + | ribose-phosphate pyrophosphokinase Daro_3731 4009962 - 4010573 + | 50S ribosomal protein L25/general stress protein Ctc TERM 3686 4010626 - 4010594 - f 95 -14.7 -3.14931 | opp_overlap 4010595 GGCATCCCGCAGTAA TGGCCGCCGCAGGCA TCA TGCCGCCGGCGGCCT TTTCGCACTTATAGC TERM 3687 4010595 - 4010625 + F 100 -18.2 -4.1585 | opp_overlap 4010594 GCATCCCGCAGTAAT GGCCGCCGCAGGCA TCA TGCCGCCGGCGGCC TTTTCGCACTTATAG Daro_3732 4010643 - 4011221 + | peptidyl-tRNA hydrolase TERM 3688 4011997 - 4011987 - g 71 -5.4 -4.32034 | overlap 4011992 CGACGACGAGGAAAA GGAA ATG TTCC TGGCCGATCTCGGCC Daro_3733 4011232 - 4012323 + | translation-associated GTPase TERM 3689 4013001 - 4012989 - g 73 -4.7 -4.58283 | opp_overlap 4012991, overlap 4012990 4012991 GAACTGCTGCAAAAA GTCGC CTT GCGCC TGCGCGAAAGCGTGC Daro_3734 4012368 - 4014116 + | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) Daro_3735 4015623 - 4014124 - | spermidine synthase Daro_3736 4015824 - 4016480 + | YceI TERM 3690 4016693 - 4016680 - g 75 -8.1 -4.14874 | overlap 4016683 AGAAGACCGCGAAAA CGAGG GCGA CCTCG TCATGGCCGCCGAGC TERM 3691 4016810 - 4016794 - g 70 -3.6 -4.58663 | overlap 4016795 AGCACGCTGCAAAAA GCTGGG GCTGA CCCAGA TGGCGCGCAACAACG TERM 3692 4017242 - 4017231 - g 71 -5.8 -4.30576 | opp_overlap 4017241 GCGTCACCAGCAAAA CCGT CTCC ACGG CCCACGGCGATTTCA Daro_3737 4016582 - 4017691 + | bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein ribH 4017697 - 4018179 + | riboflavin synthase subunit beta TERM 3693 4018580 - 4018560 - g 71 -8.9 -3.74872 | overlap 4018542 ATCGAGCTGACCAAA GCCTTCGGC GGC ACCGATGGC CACAAGTACGTCAAT Daro_3739 4018176 - 4018667 + | NusB antitermination factor TERM 3694 4019271 - 4019232 - g 80 -9.8 -4.07568 | gap 1, overlap 4019198 CGGCGCCCTCGAAAA GCCGCGCCCGCGCGTTGCC CTC GGCCTCGCACTGAC-CGGC ATCGCCAGTGCCGCG Daro_3740 4018672 - 4019649 + | thiamine-monophosphate kinase Daro_3741 4019633 - 4020118 + | phosphatidylglycerophosphatase Daro_3742 4020174 - 4020452 + | hypothetical protein TERM 3695 4020511 - 4020479 - T 80 -11.4 -3.28712 | opp_overlap 4020487, overlap 4020480 4020487 CTCTCCGCGCGAGAA GCGAAAAAGCCACC TTTGC GGTGGCTTTTTCAT GAATCCTTGGCTTGC TERM 3696 4020510 - 4020480 - T 90 -14.9 -2.57132 | opp_overlap 4020487, overlap 4020479 4020487 TCTCCGCGCGAGAAG CGAAAAAGCCACC TTTGC GGTGGCTTTTTCA TGAATCCTTGGCTTG TERM 3697 4020503 - 4020487 - T 95 -9.4 -4.78149 | opp_overlap 4020487, overlap 4020480 4020479 GCGAGAAGCGAAAAA GCCACC TTTGC GGTGGC TTTTTCATGAATCCT TERM 3698 4020487 - 4020503 + T 95 -9.4 -4.75372 | opp_overlap 4020487 4020480 4020479 GCGAGAAGCGAAAAA GCCACC TTTGC GGTGGC TTTTTCATGAATCCT Daro_3743 4022798 - 4020630 - | response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) Daro_3744 4024951 - 4022795 - | sensor histidine kinase TERM 3699 4025386 - 4025398 + H 82 -7.7 -4.56597 | GGTGCAGTTGCTTCG CCATC AAT GATGG TTTTTCGAAGCAGGA Daro_3745 4025770 - 4026354 + | hypothetical protein TERM 3700 4026374 - 4026391 + F 100 -12.7 -4.77757 | opp_overlap 4026376 AAATATTTCTCAGCA GACCCGC TCCG GCGGGTC TTTTCATTTTTAGCG TERM 3701 4026840 - 4026819 - f 100 -12.3 -4.34267 | opp_overlap 4026817 4026839 CCATATAACGCAAAA GAGCCACCC AAAC GGATGGCTC AATCACTTGATTTAC Daro_3746 4026943 - 4027599 + | hypothetical protein Daro_3747 4028178 - 4027678 - | NLP/P60 TERM 3702 4027972 - 4027984 + g 70 -4.7 -4.56597 | overlap 4027973 GCCGCTGCAATCGAG ACCGG CCT CCGGA TTTTTGCCGCCGAAG Daro_3748 4028242 - 4029696 + | succinate semialdehyde dehydrogenase Daro_3749 4029701 - 4030372 + | hypothetical protein Daro_3750 4032544 - 4030379 - | PAS:GGDEF TERM 3703 4030718 - 4030702 - G 72 -10.9 -3.28924 | GAGTTTCGGCCAGAA CGATCAG TGC CTGATCG CCGGCCATGTGGCCA TERM 3704 4030798 - 4030786 - G 70 -3.3 -4.62392 | GAATAAGCAAAGAAA GAGGG TAG CCTTC ACGGCGCGAACGGGA Daro_3751 4034530 - 4032599 - | hypothetical protein TERM 3705 4033165 - 4033145 - G 71 -6.7 -4.22749 | AAAGACAAAGAAGAA CTGGACGAC GAT GGCGACCAG AACGAGTTTCCAGAA TERM 3706 4033681 - 4033665 - G 76 -6.5 -4.46212 | TGCTTGACCAGAAAA CCGATCA CTT CGACCGG CTTGCCCTCGAGCGT TERM 3707 4034479 - 4034467 - G 74 -3.3 -4.86133 | opp_overlap 4034468, overlap 4034468 4034469 4034471 CACAGACAGCAAAAA CCGAC GAC GCCGA TTTGAAGACAACCGG Daro_3752 4035554 - 4034541 - | putative transmembrane protein Daro_3753 4035974 - 4035573 - | hypothetical protein TERM 3708 4035643 - 4035632 - G 84 -5.8 -4.91712 | opp_overlap 4035632 4035634, overlap 4035626 4035634 GCGAAGCGAGAAAAA TCGC CGAG GCGA CTTTCCCCAGGGGAA TERM 3709 4036017 - 4036027 + r 72 -6.8 -4.16016 | opp_overlap 4036004 CAGCGGATTGTCACC GCTC GCC GAGC TTTGTTCAAGCCTGA Daro_3754 4037718 - 4036033 - | diguanylate cyclase/phosphodiesterase TERM 3710 4036563 - 4036531 - G 81 -14.1 -3.35996 | overlap 4036506 CAGGTTGAGCGACAA GCGGATATCGACGCC CGC GGCGTCAAGCTCCGC GCTGAGGCGCAGGGC Daro_3755 4039006 - 4037699 - | metal-dependent phosphohydrolase TERM 3711 4038263 - 4038278 + g 70 -3.9 -4.72272 | overlap 4038262 4038261 CAGTTTCCGCTCTTC GGCCG TCAGGT CGGTC TTTTTGGTCAGCAAC Daro_3756 4039743 - 4039027 - | pantothenate kinase TERM 3712 4039285 - 4039267 - G 73 -10.2 -3.57144 | CTCCCCATCGGCAAA CGGCAAGG CCG CCGTGCCG TGAGCCAGCGAGCGC Daro_3757 4040554 - 4039751 - | biotin--acetyl-CoA-carboxylase ligase TERM 3713 4040551 - 4040580 + g 73 -13.6 -2.71364 | opp_overlap 4040549 4040546 4040545 TGGGATCAATCAAGG GCATGCGGCGGA TTTTAC TCCGCTGCGTGC TCCTTGCCGCCATCG Daro_3758 4041995 - 4040565 - | helix-turn-helix, Fis-type:nitrogen regulation protein NR(I) TERM 3714 4041594 - 4041610 + g 72 -10.9 -3.40867 | CCCTTCCTCCTCCAT TGCACCA CTC TGGTGCA TTGATTCGTCAATCG Daro_3759 4043097 - 4042027 - | sensor histidine kinase TERM 3715 4043821 - 4043800 - g 71 -6.5 -4.25104 | CCGCCCCGAGGAAAA GGAAGTGGC CATC GCCATTCCC GAAAACCGGCTGGCC Daro_3760 4043189 - 4044277 + | secretion protein HlyD TERM 3716 4044541 - 4044502 - g 75 -2.8 -4.91459 | CAAGATCGAGAAAAA GCTGCAGGAAACCC CTTATATCGATC GGGTTTCCAGCTAC TCGCGCCCCGGCGAA Daro_3761 4044281 - 4047424 + | acriflavin resistance protein TERM 3717 4047471 - 4047456 - T 80 -11.8 -3.39521 | GTTAGCAAAAGCGAA GGGCGC CGCA GCGCCC CCAAACTTTGCTAAC Daro_3762 4047949 - 4047503 - | hypothetical protein TERM 3718 4048049 - 4048010 - R 100 -15.2 -3.3878 | gap 1, opp_overlap 4048022, overlap 4048022 ATAGACCCGAAAAAG TGGACAAAAAAAGGGCGGG AAA CCCGCCCTTTTTT-GCACA GTGCTAATTAGCAGC TERM 3719 4048038 - 4048022 - R 100 -15.1 -5.63504 | opp_overlap 4048022, overlap 4048010 AAGTGGACAAAAAAA GGGCGGG AAA CCCGCCC TTTTTTGCACAGTGC TERM 3720 4048022 - 4048038 + r 100 -15.1 -5.02074 | opp_overlap 4048022 4048010 AAGTGGACAAAAAAA GGGCGGG AAA CCCGCCC TTTTTTGCACAGTGC Daro_3763 4049472 - 4048057 - | L-glutamine synthetase TERM 3721 4049415 - 4049431 + g 70 -5.1 -4.46615 | opp_overlap 4049409 4049408, overlap 4049409 CGGTGAAACGGAAAT CGACG AATTTAG CGTCG TTTTCCTTGATCATC Daro_3764 4050843 - 4049674 - | cation efflux protein TERM 3722 4049970 - 4049928 - G 89 -4.3 -5.24129 | overlap 4049929 4049930 GGCGGGCAGAAAAAA CCGCCGGGTCCATATC-ATCC TCC GGATCAATATGGACC-AGCAC ATCGAGCACCTCCGG Daro_3765 4050891 - 4051343 + | rhodanese-like protein TERM 3723 4052437 - 4052421 - g 71 -7.9 -4.09685 | CTGGACGTTGGAAAA CCTGGCC GAG GGCAAGG TGGTCAACCAGATCA Daro_3766 4051420 - 4052517 + | quinolinate synthetase TERM 3724 4053014 - 4053000 - g 71 -5.6 -4.38712 | CTTATCTGGATAAAA CAGCCG ACC CGACCG CGCCGCTGATCATCG Daro_3767 4052525 - 4053283 + | endonuclease/exonuclease/phosphatase TERM 3725 4054161 - 4054175 + G 72 -11.4 -3.28924 | ATGCACGCCAAGGTC GCCGTC ATT GACGGC TTGTGGGCGACGGTC Daro_3768 4053273 - 4054466 + | phospholipase D/transphosphatidylase Daro_3769 4055352 - 4054447 - | glutamyl-Q tRNA(Asp) synthetase TERM 3726 4054585 - 4054573 - G 71 -6.9 -4.15044 | GCCTTGTCCAAGAAA CCGCA AAG CGCGG ACCAATTCGGCAGCG TERM 3727 4055378 - 4055368 - R 74 -2.4 -5.1101 | TGACGACGGAAAAAA CCAG GGC CAGG CGATTTTATGTCGAA Daro_3770 4056488 - 4055502 - | PAS:GGDEF TERM 3728 4056979 - 4057018 + G 74 -6.5 -4.30719 | gap 2, opp_overlap 4056979 4056976, overlap 4056981 CGGGTTGATGAATCA G-CCCGCAGTTCAGCG-GA ACAA TCACGCTGAACTGCAGTTC TTTGTTCTGGCGAAC TERM 3729 4056981 - 4057015 + G 100 -13.7 -4.27512 | gap 1, opp_overlap 4056979 4056976, overlap 4056979 GGTTGATGAATCAGC CCGCAGTTCAGCG-GA ACAA TCACGCTGAACTGCAG TTCTTTGTTCTGGCG Daro_3771 4056809 - 4057069 + | hypothetical protein Daro_3772 4058297 - 4057080 - | TPR repeat-containing protein Daro_3773 4058645 - 4058349 - | hypothetical protein Daro_3774 4059297 - 4058776 - | thiol-disulfide isomerase-like protein Daro_3775 4060680 - 4059604 - | 3-isopropylmalate dehydrogenase TERM 3730 4060723 - 4060703 - R 100 -10.3 -5.44119 | overlap 4060704 CTCACCGCAAAAAAA CGGGGGGCC TGA AGCCCCCCT AAGGTTGGAGGAGAG TERM 3731 4060722 - 4060704 - R 100 -13.8 -3.85748 | overlap 4060703 TCACCGCAAAAAAAC GGGGGGCC TGA AGCCCCCC TAAGGTTGGAGGAGA Daro_3776 4062117 - 4060801 - | hypothetical protein TERM 3732 4061390 - 4061360 - G 72 -13.2 -2.6072 | overlap 4061357 4061356 GAGCCAAGGAAGGCA TCGGTCACCTGGCC CTG GGCCAGGCGGCGGA CACGGCGCTGGAAGC Daro_3777 4064113 - 4062140 - | putative cox2 cytochrome oxidase subunit 2 Daro_3778 4066570 - 4064180 - | putative transport protein TERM 3733 4064411 - 4064435 + g 72 -2.8 -4.8048 | gap 1, overlap 4064393 GACGGCATAGCCGGT GGTTGCCA-CG GCGG TGATGGCGGCC TTTTTCATGTCGCGC Daro_3779 4067556 - 4066591 - | BNR repeat-containing glycosyl hydrolase TERM 3734 4067702 - 4067687 - R 77 -10.4 -3.68569 | TTATTGATTCAATAA TGGCCG ACAC CGGCCA ATACCGTCCAATACC Daro_3780 4067997 - 4067806 - | 4-oxalocrotonate tautomerase Daro_3781 4068802 - 4068014 - | hydratase/decarboxylase Daro_3782 4069830 - 4068799 - | 4-hydroxy-2-ketovalerate aldolase TERM 3735 4069790 - 4069809 + g 84 -3.6 -5.22039 | gap 1 ATGCCATCGCGCAGG GTCA-TGTC ATG GACGGTGAC TTTTTTGCCTTTGAG Daro_3783 4070765 - 4069851 - | acetaldehyde dehydrogenase TERM 3736 4070839 - 4070808 - R 93 -13 -3.59627 | gap 1 AGCAAATGGTGGAAA CGATGCCGCCCT-CG ACG CGCAGCGCGGCACCG GTCGTCGCAGCCGCT Daro_3784 4071585 - 4070791 - | Short-chain dehydrogenase/reductase SDR TERM 3737 4071627 - 4071610 - R 70 -4.8 -4.52589 | gap 1, overlap 4071612 4071622 4071623 CCGGCTTAGACAAAA CGGACGG AACAA CCG-CCG ATGCCGCCGATGGTC Daro_3785 4072382 - 4071600 - | hydratase/decarboxylase Daro_3786 4073229 - 4072405 - | Alpha/beta hydrolase fold Daro_3787 4074696 - 4073242 - | aldehyde dehydrogenase TERM 3738 4073615 - 4073668 + g 80 -11 -3.84406 | gap 2, opp_overlap 4073644, overlap 4073665 TTGGCCAGCTCGCCC GGCATGTCGGGGATGCCACCACCAGT AACC AC-GGTGGCGCCCTCCTCGACG-GCC TTCTTGTAATACGAC Daro_3788 4075147 - 4074719 - | hypothetical protein TERM 3739 4075024 - 4075046 + g 86 -14.8 -3.38072 | AGGCCATCAGGTTGC CGCCGCGGTC GAC GACCGCGACG TTGATCTTCCATCCC TERM 3740 4075108 - 4075077 - G 86 -13.6 -3.53012 | opp_overlap 4075083, overlap 4075095 4075096 TTGGCCGCCGCGAAA GCAACCGCCGCCGC ACAA GCTGCGGAGGCTGC CTCGGCAGTGATCCC Daro_3789 4076073 - 4075147 - | glyoxalase/bleomycin resistance protein/dioxygenase TERM 3741 4075629 - 4075639 + g 71 -8.2 -4.07568 | overlap 4075623 GGTCGAGGCGGATCG GGGC GAT GCCC TTTTCGGCCGAGGCG Daro_3790 4076256 - 4076963 + | GntR family transcriptional regulator Daro_3791 4077314 - 4076976 - | ferredoxin Daro_3792 4078393 - 4077332 - | ferredoxin:oxidoreductase FAD/NAD(P)-binding:oxidoreductase FAD-binding region TERM 3742 4077843 - 4077801 - G 75 -8.5 -4.24342 | gap 2, overlap 4077802 TTCTTGACGAAGAAA CGACCATAGG-GACCGG-TGA ATT TCAGCCGGTCTCCGACGGCCA ACTGCTCGTGCAGCC Daro_3793 4078762 - 4078406 - | phenol hydroxylase region TERM 3743 4078679 - 4078665 - G 75 -2.8 -4.89838 | GCAACAAACAGAAAA TGGTCA TCC CAACCA ACGAAGAGCAGTTGG TERM 3744 4078785 - 4078806 + r 100 -15.9 -3.25282 | TCCTAAATTTTTGTC CGGAGGGCA AAGC TGCCCTCCG TTGATACTGATTGAT Daro_3794 4080374 - 4078821 - | methane/phenol/toluene hydroxylase:YHS Daro_3795 4080658 - 4080389 - | monooxygenase component MmoB/DmpM Daro_3796 4081656 - 4080667 - | methane/phenol/toluene hydroxylase Daro_3797 4081967 - 4081698 - | phenol hydroxylase subunit TERM 3745 4082028 - 4082050 + H 81 -4.9 -5.08601 | gap 1, overlap 4082031 CTCTTAATCAAGGAG CGTGCCACTT TGAT AAGTGGC-TG TTTTTATTGAGATCG TERM 3746 4082031 - 4082048 + H 85 -9.9 -4.16909 | overlap 4082028 TTAATCAAGGAGCGT GCCACTT TGAT AAGTGGC TGTTTTTATTGAGAT Daro_3798 4082405 - 4084081 + | helix-turn-helix, Fis-type Daro_3799 4084095 - 4084997 + | regulatory protein, LysR:LysR, substrate-binding Daro_3801 4085375 - 4085617 + | hypothetical protein Daro_3802 4085621 - 4085812 + | hypothetical protein Daro_3803 4085805 - 4086236 + | PAS TERM 3747 4087055 - 4087041 - g 74 -12.8 -3.20078 | opp_overlap 4087037, overlap 4087039 CACCGCACACGAACA GCCGGC AAG GCCGGC GGCGTGCTGTGCAGC Daro_3804 4086420 - 4087220 + | HpcH/HpaI aldolase TERM 3748 4087258 - 4087243 - f 70 -5.4 -4.33653 | GATTCAAAAACCAAA GCCATC GACG AATGGC CCATTTGATAACCAA TERM 3749 4087705 - 4087662 - g 83 -2.3 -5.252 | gap 2, overlap 4087663 4087691 4087692 TATGCCGAGAAAAAA GCCGTCGGCAACG-G-TCTGC AGGT GCAGAACCCGGCGCCGTGGAC CAAGGCATCGGAAAA TERM 3750 4087733 - 4087721 - g 71 -6.9 -4.15453 | CAAGGCATCGGAAAA CGGCA TCG CGCCG GTTCGCCTCGACCAC TERM 3751 4088021 - 4088000 - g 76 -10.1 -3.72324 | overlap 4087987 CATGTCGATGAACAA CGTGCCGAT CGAC ATCGGCCCG ACCCGCCACGGCATC Daro_3805 4087287 - 4088222 + | glyoxalase/bleomycin resistance protein/dioxygenase TERM 3752 4088229 - 4088255 + F 78 -10.8 -3.42056 | opp_overlap 4088245, overlap 4088230 GTGACTTGATCGTTA CGGGCGGCTG ACTCAAG CAGCCGCCCC TTCTGCATTCCCCCT TERM 3753 4088230 - 4088254 + F 84 -14.3 -2.64912 | opp_overlap 4088245, overlap 4088229 TGACTTGATCGTTAC GGGCGGCTG ACTCAAG CAGCCGCCC CTTCTGCATTCCCCC TERM 3754 4088620 - 4088605 - g 70 -10.4 -3.53012 | TCGTCGCTGCCGAAA TGGCCG ATAC CGGCCA GCCCTCGCACGTCCA Daro_3806 4088331 - 4089800 + | aldehyde dehydrogenase Daro_3807 4089816 - 4090733 + | acetaldehyde dehydrogenase Daro_3808 4090730 - 4091794 + | 4-hydroxy-2-ketovalerate aldolase Daro_3809 4091791 - 4092555 + | Short-chain dehydrogenase/reductase SDR Daro_3810 4092571 - 4093005 + | 4-oxalocrotonate tautomerase TERM 3755 4093270 - 4093284 + G 84 -10 -4.18494 | AGCGAGGGACGCTGG TCGCTG CGG CAGCGA TTTTCCCTGGCCATC Daro_3811 4093231 - 4094829 + | histidine kinase, HAMP region: chemotaxis sensory transducer Daro_3812 4095473 - 4094847 - | two component LuxR family transcriptional regulator Daro_3813 4098361 - 4095470 - | PAS/PAC sensor hybrid histidine kinase TERM 3756 4097952 - 4097942 - G 81 -8.2 -4.72272 | overlap 4097943 4097944 TTCCGGCAGCAAAAA GGCG ACC CGCC CGGCATCGTCGCGGA TERM 3757 4098411 - 4098385 - R 95 -15.8 -2.55074 | overlap 4098361 CCCAAGGCGAACCGA GCCGGGGGACGC ATC ACGTCACCCGGC TCCGGTTCGCGGAAA TERM 3758 4098516 - 4098497 - R 100 -13.6 -5.26875 | CCCGCAAGCAAAAAA GGGCGAGT GCGA ACTCGCCC AACCCAAGGAGGAGG Daro_3814 4099941 - 4098547 - | aromatic hydrocarbon degradation protein TERM 3759 4099406 - 4099422 + g 73 -4.4 -4.69027 | gap 1, opp_overlap 4099405 CACATCGCATCGAAG CT-GCCG CCGA CGGCCAG TTTTTCGCTGACTTT Daro_3815 4101025 - 4100009 - | ferredoxin:oxidoreductase FAD/NAD(P)-binding:oxidoreductase FAD-binding region TERM 3760 4100661 - 4100634 - G 71 -9.1 -3.72576 | opp_overlap 4100637 TGGCCGGGCAGGAAA TCCGCCGCCTG TTCAGC CAGGAAGCGGA ACTCGCGGATATCGT Daro_3816 4102084 - 4101098 - | methane/phenol/toluene hydroxylase Daro_3817 4102581 - 4102141 - | monooxygenase component MmoB/DmpM Daro_3818 4102954 - 4102619 - | Rieske (2Fe-2S) region Daro_3819 4103268 - 4103002 - | toluene-4-monooxygenase system B TERM 3761 4103295 - 4103316 + r 100 -18.7 -3.05816 | overlap 4103314 CCTCTGTTTTTTGAT GCCGGCGCC TGGC GGCGCCGGC TTGCATGGACGGTGA Daro_3820 4104837 - 4103332 - | methane/phenol/toluene hydroxylase:YHS Daro_3821 4107387 - 4105108 - | Cache sensor hybrid histidine kinase TERM 3762 4106603 - 4106588 - G 74 -4 -4.74103 | gap 1 GCGCCAAGCCAAAAA TGGATCG GCC CG-TCCA GGGTATCGGTAAATC TERM 3763 4107355 - 4107318 - G 72 -2.7 -4.74132 | gap 1, overlap 4107319 4107321 ACATGGCAGCAAAAA TC-ACCATTAGCGGTGCT GCA AGCATCGCCAGCAGTCGA ACTCTCAAGCTGCCA TERM 3764 4107762 - 4107776 + r 75 -7.1 -4.32678 | overlap 4107742 4107756 GGTCAGTGGCAAGTT GCTGC GAACG GCAGC TTCTTTGTTTGGCGA Daro_3822 4109254 - 4107965 - | RNA-directed DNA polymerase (Reverse transcriptase) TERM 3765 4108268 - 4108278 + g 70 -3.2 -4.63218 | GATTTTCTCCACCAT GCGT CGA ATGC TTTTCTTCGACGGCC TERM 3766 4109712 - 4109737 + r 74 -9.7 -3.54424 | CGTTACCTCCATGAC TGCTCCGGTTG CTTC CGGCTGGAGCA TTTCGCCGGGTGGGG TERM 3767 4109790 - 4109771 - R 77 -8.5 -4.14739 | opp_overlap 4109746 TCACCCACTGGAAAA GCGCCGC CTTTGC ACGGCGC ACGCCCTTTGCTGCC Daro_3823 4110492 - 4109905 - | hypothetical protein TERM 3768 4110571 - 4110545 - R 78 -8.1 -4.4009 | opp_overlap 4110544 4110545 GGTTATTGCACAAAA TTTGGACACGA TAGAG TCGTCTCCAAA ATTGTGAATGACATA Daro_3824 4112361 - 4110880 - | transposase IS4 Daro_3825 4112457 - 4113248 + | hypothetical protein Daro_3826 4114651 - 4113482 - | metallophosphoesterase TERM 3769 4114591 - 4114576 - G 71 -8.2 -4.12188 | overlap 4114578 CGATGAGCGGCAAAA CACGCC ACAG GGCGCG GCGAAAGCGGCCCGG Daro_3827 4116274 - 4114760 - | RND efflux system, outer membrane lipoprotein, NodT TERM 3770 4115305 - 4115258 - G 75 -2.5 -5.0133 | overlap 4115259 4115260 GAGGCGCGGAAAAAA GGCGGCGCGGGCCG-TGCCGATG CGGG CATTGGCGGCGGCCATCGCC-CG TTCGGCGGCGGCAAT TERM 3771 4116049 - 4116063 + g 72 -12.8 -3.06671 | CGCGCGGGATGTTCT CGGCCG GCT CGGCCG TCTTCCACTGGCTAT Daro_3828 4119481 - 4116293 - | hydrophobe/amphiphile efflux-1 HAE1 Daro_3829 4120657 - 4119494 - | secretion protein HlyD Daro_3830 4121641 - 4120769 - | esterase/lipase/thioesterase TERM 3772 4122392 - 4122364 - g 82 -15.3 -3.21218 | opp_overlap 4122365 4122385, overlap 4122365 4122378 ATCGTCGATGATCAA TCGGTGCCCTACA AGA TGCAGGGCACCGT TTCGGTCAACGACAT TERM 3773 4122391 - 4122365 - g 88 -18.8 -2.52516 | opp_overlap 4122365 4122385, overlap 4122364 4122378 TCGTCGATGATCAAT CGGTGCCCTACA AGA TGCAGGGCACCG TTTCGGTCAACGACA TERM 3774 4122365 - 4122391 + G 100 -16.6 -3.64703 | opp_overlap 4122365 4122364 4122378, overlap 4122385 TCGTCGATGATCAAT CGGTGCCCTACA AGA TGCAGGGCACCG TTTCGGTCAACGACA Daro_3831 4121734 - 4122741 + | LysR family transcriptional regulator Daro_3832 4123508 - 4122954 - | alkylhydroperoxidase AhpD core Daro_3833 4124554 - 4123523 - | zinc-containing alcohol dehydrogenase superfamily protein TERM 3775 4125466 - 4125482 + G 74 -6.5 -4.33165 | overlap 4125479 CAAAGACTTGCGCCA CTTGGGG CGA CTCCGAG TTTTCCTCGATTTCG Daro_3834 4124636 - 4125523 + | regulatory protein, LysR:LysR, substrate-binding TERM 3776 4125977 - 4125993 + G 74 -3.7 -4.81083 | overlap 4125970 ATCAGGCGTTGGCAA CCAGT TATTTCC ACTGG TTTTTCCTGATTCAG Daro_3835 4125535 - 4126446 + | Alpha/beta hydrolase fold TERM 3777 4126450 - 4126498 + T 100 -15.4 -4.00348 | gap 1, opp_overlap 4126451, overlap 4126451 CTCGCCGGATAGGGA ACCGGGCGTTCCGGCAGGC CAAGCCTGCAAT GC-TGCCGGAACGCCCGGA TTTCGTTACTTCAGA TERM 3778 4126451 - 4126497 + T 100 -18.9 -2.99727 | gap 1, opp_overlap 4126451, overlap 4126450 TCGCCGGATAGGGAA CCGGGCGTTCCGGCAGGC CAAGCCTGCAAT GC-TGCCGGAACGCCCGG ATTTCGTTACTTCAG TERM 3779 4126497 - 4126451 - T 100 -18.9 -3.12351 | gap 1, opp_overlap 4126451 4126450 TCGCCGGATAGGGAA CCGGGCGTTCCGGCAGGC CAAGCCTGCAAT GC-TGCCGGAACGCCCGG ATTTCGTTACTTCAG Daro_3836 4128714 - 4126504 - | heme catalase/peroxidase TERM 3780 4127931 - 4127945 + g 74 -7.1 -4.29227 | overlap 4127889 AGGTGTGGCCACCGG CGGTC AAGGC GACCG TTTCTTCATCGTTCA TERM 3781 4130162 - 4130134 - g 79 -9.5 -4.17048 | CGTGCTGGAAAACAA GGCCATCGCCC GCCTGCA GGACGAAGGCC TGCACGAAGCGCTCG Daro_3837 4129487 - 4130347 + | RNA polymerase factor sigma-32 TERM 3782 4130388 - 4130371 - T 95 -12.7 -4.23674 | opp_overlap 4130371 CGTTACCAACAGAAA GGGGAGC CGAG GCTCCCC TTTGTTTTTCCAGGC TERM 3783 4130371 - 4130388 + T 100 -12.7 -4.85782 | opp_overlap 4130371 CGTTACCAACAGAAA GGGGAGC CGAG GCTCCCC TTTGTTTTTCCAGGC napH 4131405 - 4130500 - | quinol dehydrogenase membrane component napG 4132274 - 4131402 - | quinol dehydrogenase periplasmic component Daro_3840 4132571 - 4132362 - | hypothetical protein TERM 3784 4132664 - 4132651 - R 78 -8.1 -4.38472 | opp_overlap 4132650 4132661 CGCAAATCAAAACAA CAGGG ATAG CCCTG AATTTCTTGCAGGTA Daro_3841 4133453 - 4132692 - | TatD-related deoxyribonuclease Daro_3842 4134703 - 4133447 - | D-amino acid dehydrogenase small subunit Daro_3843 4136853 - 4134700 - | RelA/SpoT protein TERM 3785 4136725 - 4136746 + g 93 -15.9 -3.52316 | overlap 4136720 ACTGGCGTGCGCACG GGCGGCGTA GGCA TACGCCGCC TTGATTCTCTCTACA Daro_3844 4137081 - 4136875 - | RNA polymerase, omega subunit Daro_3845 4137706 - 4137098 - | guanylate kinase Daro_3846 4140331 - 4137749 - | PAS/PAC sensor hybrid histidine kinase TERM 3786 4140362 - 4140397 + H 83 -6.1 -4.99435 | opp_overlap 4140362 CGAGGTGGATCTAAA TCAGTAGTAGCAGGC ACAAAG GCCCACAACTACTGA TTTTTCGTTATTCGA TERM 3787 4140397 - 4140362 - H 81 -10.5 -3.65351 | opp_overlap 4140362 CGAGGTGGATCTAAA TCAGTAGTAGCAGGC ACAAAG GCCCACAACTACTGA TTTTTCGTTATTCGA Daro_3847 4140748 - 4141362 + | hypothetical protein TERM 3788 4141385 - 4141401 + T 100 -10.8 -5.05505 | opp_overlap 4141385 GTACTCAGTACTGAA CCCGCC TTCGT GGCGGG TTTTTCGTTTCTAGT TERM 3789 4141401 - 4141385 - T 72 -10.8 -3.10164 | opp_overlap 4141385 GTACTCAGTACTGAA CCCGCC TTCGT GGCGGG TTTTTCGTTTCTAGT Daro_3848 4142791 - 4141925 - | hypothetical protein TERM 3790 4142930 - 4142952 + G 71 -5.5 -4.3487 | gap 1, opp_overlap 4142931, overlap 4142931 AAGAGTACATAATTG ACCGCC-AGC TTTC GCTCGGCGGC TTTTCCATTGTGTAT Daro_3849 4142869 - 4143813 + | serine/threonine protein kinase Daro_3850 4143813 - 4144733 + | protein phosphatase 2C-like TERM 3791 4144904 - 4144881 - g 70 -3.1 -4.63932 | gap 1, overlap 4144882 4144883 CAGCGTCGAAGAAAA TGTGCCGCCC TTCCT GCGCGGCA-A GGGCCAGGGCTGGGT Daro_3851 4144744 - 4145460 + | ribonuclease PH Daro_3852 4145457 - 4146044 + | putative deoxyribonucleotide triphosphate pyrophosphatase TERM 3792 4147296 - 4147269 - g 84 -6.1 -5.00616 | opp_overlap 4147271, overlap 4147270 4147271 TCGGCCCGGAAAAAA TTGCGCCGACC GCGAAG GGCCGGCGCTT TCTGAACGTGTTGCT TERM 3793 4147271 - 4147294 + G 82 -10.9 -3.89501 | opp_overlap 4147271 4147270 4147269 GGCCCGGAAAAAATT GCGCCGACC GCGAAG GGCCGGCGC TTTCTGAACGTGTTG Daro_3853 4146128 - 4147327 + | coproporphyrinogen III oxidase Daro_3854 4148021 - 4147356 - | surface antigen protein Daro_3855 4148527 - 4148117 - | hypothetical protein Daro_3856 4150292 - 4148613 - | ABC transporter related Daro_3857 4150723 - 4150334 - | SecC motif-containing protein TERM 3794 4150675 - 4150716 + g 71 -5.8 -4.29845 | gap 1, opp_overlap 4150674, overlap 4150677 4150679 GTCGGCCGCAGCAAT CGGCGTAACGCCTGCCGCT ACCGC AGGGACAGGCGTCAC-TCG TTTTCACTTGGCTTC rdgC 4151634 - 4150720 - | recombination associated protein TERM 3795 4151107 - 4151080 - G 88 -13.4 -3.59979 | gap 1 GCGGTCGATGGTAAA GCCAGCCGG-GGC GTC GCCGCCGGCCAGC CAGTCGGCCATCGCC TERM 3796 4151761 - 4151797 + r 93 -10.2 -4.56597 | opp_overlap 4151764, overlap 4151750 4151763 4151764 AAGCCTGCCAGAAAA AAACCTCTGGCAACTT CGTGT GAGTTGCCAGAGGCTC TTTTTCAACAGCACC TERM 3797 4151763 - 4151795 + r 93 -12.8 -3.90048 | opp_overlap 4151764, overlap 4151750 4151761 4151764 GCCTGCCAGAAAAAA ACCTCTGGCAACTT CGTGT GAGTTGCCAGAGGC TCTTTTTCAACAGCA TERM 3798 4151794 - 4151764 - R 100 -15.6 -5.60993 | opp_overlap 4151750 4151763 4151761 4151764 CCTGCCAGAAAAAAA CCTCTGGCAACT TCGTGTG AGTTGCCAGAGG CTCTTTTTCAACAGC TERM 3799 4151764 - 4151794 + r 100 -16.3 -2.93708 | opp_overlap 4151764, overlap 4151750 4151763 4151761 CCTGCCAGAAAAAAA CCTCTGGCAACTT CGTGT GAGTTGCCAGAGG CTCTTTTTCAACAGC Daro_3859 4152462 - 4151842 - | cytochrome c5 Daro_3860 4153257 - 4152517 - | hypothetical protein TERM 3800 4152559 - 4152543 - G 79 -8.7 -4.18018 | GTTTTTTACGGAAAA TGACGTC CCA GACGCCA TGGCCGAGGCGCAAA TERM 3801 4152563 - 4152580 + g 75 -8.4 -4.15106 | TCCCAGACGCCATGG CCGAGG CGCAAA CCTCGG TTTTCGAACTTGGTC thiG 4154036 - 4153254 - | thiazole synthase Daro_3862 4154252 - 4154049 - | ThiS, thiamine-biosynthesis Daro_3863 4155039 - 4154257 - | short chain dehydrogenase TERM 3802 4154461 - 4154474 + g 71 -9.5 -3.70902 | TTGGTAGGGATTGAC CGCCG TCAT CGGCG TTTCGATGTAGCCCG TERM 3803 4155019 - 4154982 - G 85 -12.7 -3.83502 | gap 1, opp_overlap 4154987, overlap 4154983 GAGCGGCATAGTAAA CGGCAAGCGCCTCGCCGA TAC CCGACGAGGCGCCTGT-G ATGAAGACCCTGAGC TERM 3804 4155019 - 4154983 - G 70 -12.9 -2.8978 | opp_overlap 4154987, overlap 4154982 AGCGGCATAGTAAAC GGCAAGCGCCTCGCCGA TAC CCGACGAGGCGCCTGTG ATGAAGACCCTGAGC Daro_3864 4155696 - 4155040 - | twin-arginine translocation pathway signal Daro_3865 4156335 - 4155706 - | sporulation related argS 4158108 - 4156345 - | arginyl-tRNA synthetase Daro_3867 4158670 - 4158140 - | hypothetical protein Daro_3868 4160233 - 4158680 - | diguanylate cyclase TERM 3805 4159868 - 4159837 - G 73 -10.8 -3.62224 | overlap 4159825 4159839 4159860 ACACGCCCTCAACAA GACGGGCGAGCTTG CTGG CAAACTCGCCAGGC AACGACTCCACCGAC TERM 3806 4159866 - 4159839 - G 72 -12 -3.38991 | overlap 4159825 4159837 4159860 ACGCCCTCAACAAGA CGGGCGAGCTTG CTGG CAAACTCGCCAG GCAACGACTCCACCG TERM 3807 4160748 - 4160738 - g 77 -8.2 -4.35926 | overlap 4160740 AGCCGAAATCGAAAA GGCC TAT GGCC GTCCGGCCAGCGAAG ubiB 4160421 - 4161941 + | putative ubiquinone biosynthesis protein UbiB TERM 3808 4162345 - 4162321 - g 79 -7.8 -4.44667 | gap 1, opp_overlap 4162321 4162339 GTCGCCAAGAAGAAA GCTCGCCCGGC CAGT GCCCGGC-AGC AGCTGTTCTACATCC TERM 3809 4163803 - 4163815 + G 70 -10.5 -3.51411 | overlap 4163799 GACGTCGCGCCCCCT GCCGG CTT CCGGC TTGATTTGCGCCCCT TERM 3810 4165115 - 4165100 - g 84 -4 -5.1675 | gap 1 GCATTGAGGAAAAAA TCCTTGC CCT GCA-GGA GCGGAAAGCCGAACT Daro_3870 4161946 - 4165221 + | SNF2-related:helicase, C-terminal:SWIM Zn-finger TERM 3811 4165234 - 4165264 + F 72 -5.2 -4.46212 | opp_overlap 4165225 TAAGTACCGCTGGGG CGCGGCAATGCCTA CAA TAGGCTCAGCAGCG TTTTCTAATAGAGGA TERM 3812 4165669 - 4165633 - g 91 -5.8 -5.40072 | gap 1, overlap 4165635 4165664 GCCCGGTGAAAAAAA TGCGACTT-GGGTTGCC TATC GGCTACCCAAAGGCGAA GCGGCGAAGCTGGTC Daro_3871 4165286 - 4165726 + | hypothetical protein Daro_3872 4168331 - 4165770 - | PAS TERM 3813 4167698 - 4167684 - G 78 -2.1 -5.14563 | gap 1 GCTGGCATTAAAAAA CCG-TG AAAA CATCGG GTTACAGGACAGATA TERM 3814 4168239 - 4168229 - G 71 -6.8 -4.20084 | opp_overlap 4168232, overlap 4168232 ACGAGGTATGGAAAA GCAG TCG CTGC AGCGTCTTCTTGAGC Daro_3873 4169470 - 4168328 - | hypothetical protein TERM 3815 4169128 - 4169113 - G 71 -6 -4.42667 | opp_overlap 4169121 CGAAAATCATGAAAA GCGTCG GTTT CGGCGC ATCGGCCGGATAGCT Daro_3874 4170054 - 4169554 - | CinA, C-terminal Daro_3875 4170088 - 4170693 + | molybdenum cofactor guanylyltransferase Daro_3876 4170802 - 4170984 + | hypothetical protein TERM 3816 4171041 - 4171028 - f 90 -8.1 -4.77165 | GGTTCGACAATAAAA CCGGA GCAC TCCGG GAAAAATTCACATGG TERM 3817 4171213 - 4171229 + F 100 -15.1 -5.81412 | TTCGAGAATTTTTCA CCCCGCC GCT GGCGGGG TTTTTTTTGGCTGAG TERM 3818 4171323 - 4171312 - g 73 -4.4 -4.63932 | CATGGCTGAACAAAA CTCT TCCA AGAG CATCATGTGGAAAAC Daro_3877 4171298 - 4171741 + | cytochrome c, class I TERM 3819 4171763 - 4171780 + T 100 -12.7 -4.72272 | opp_overlap 4171763, overlap 4171773 CCGACCCGGATTCAA GGGAGGC TACG GCCTCCC TTTTTCGTGGACGAA TERM 3820 4171780 - 4171763 - T 79 -12.7 -3.06183 | opp_overlap 4171763 4171773 CCGACCCGGATTCAA GGGAGGC TACG GCCTCCC TTTTTCGTGGACGAA TERM 3821 4171801 - 4171817 + T 77 -11.5 -3.14211 | opp_overlap 4171801, overlap 4171773 CGTGGACGAAGAAAA GGCGCCT CTT GGGCGCC TTGGTCAGCGCGGCT TERM 3822 4171817 - 4171801 - T 100 -10.8 -4.71426 | opp_overlap 4171773 4171801 CGTGGACGAAGAAAA GGCGCC TCTTG GGCGCC TTGGTCAGCGCGGCT Daro_3878 4172183 - 4171869 - | tol protein, membrane spanning protein Daro_3879 4174315 - 4172324 - | ATP-dependent DNA helicase Rep TERM 3823 4174332 - 4174355 + r 76 -10.9 -3.33696 | opp_overlap 4174331 4174330 4174333, overlap 4174333 GACCTGGGAAAAAGC AGCGCCCCG ACAAGG CGGGGCGCA TTGATTCGGACAGAG TERM 3824 4174354 - 4174333 - R 95 -14.4 -3.23975 | opp_overlap 4174332 4174333, overlap 4174331 4174330 ACCTGGGAAAAAGCA GCGCCCCG ACAAGG CGGGGCGC ATTGATTCGGACAGA TERM 3825 4174333 - 4174354 + r 90 -14.4 -2.60075 | opp_overlap 4174333 4174331 4174330, overlap 4174332 ACCTGGGAAAAAGCA GCGCCCCG ACAAGG CGGGGCGC ATTGATTCGGACAGA Daro_3880 4174750 - 4174433 - | hypothetical protein Daro_3881 4175487 - 4174801 - | hypothetical protein TERM 3826 4174833 - 4174863 + g 74 -4 -4.77698 | gap 2, overlap 4174833 4174834 CCTTTTTCAGCAGGT C-GC-TGCCGGCCC CAACC GGGTTGGCACGCAG TTTCTTTTCCTCTTC TERM 3827 4174909 - 4174896 - G 77 -8.1 -4.32034 | opp_overlap 4174896 CGATCATCAGGAAAA GGCCA TCCA TGGCC TTTTGCGTCACATAG TERM 3828 4174896 - 4174909 + g 75 -8.1 -4.1899 | opp_overlap 4174896 CGATCATCAGGAAAA GGCCA TCCA TGGCC TTTTGCGTCACATAG TERM 3829 4175273 - 4175247 - G 70 -10.8 -3.5032 | opp_overlap 4175254, overlap 4175245 TGCCCATACCAAACA TGCGAAGGGCCG AAT CGGCCTTTTGCA GATATCCAGGCAACG TERM 3830 4175254 - 4175266 + g 80 -10.5 -4.13014 | opp_overlap 4175247 4175245 ACCAAACATGCGAAG GGCCG AAT CGGCC TTTTGCAGATATCCA Daro_3882 4176643 - 4175507 - | pilus retraction protein PilT Daro_3883 4177720 - 4176677 - | pilus retraction protein PilT TERM 3831 4177996 - 4177971 - g 81 -13.3 -3.3785 | overlap 4177960 GGAAGGCATCGACAA GATCGCGGCCA TCAG CGGCCGCAATC TGGAGTGGCACTTTA Daro_3884 4177777 - 4178466 + | hypothetical protein TERM 3832 4178574 - 4178596 + G 95 -19.2 -3.33162 | GACCCGGGTGCAGAG GCGCTGGCCA AAC TGGCCAGCGC TTATGGCGTCAACTG Daro_3885 4178463 - 4179275 + | pyrroline-5-carboxylate reductase Daro_3886 4179275 - 4179808 + | hypothetical protein Daro_3887 4179805 - 4180098 + | hypothetical protein TERM 3833 4180128 - 4180099 - T 76 -10.7 -3.35679 | overlap 4180105 CTGGCTGATCGATAA GACAAACGGCCAC CGAC GCAGCCGCCTGTC CTGCAACCATACCCG TERM 3834 4180122 - 4180105 - T 72 -6.9 -4.28188 | overlap 4180099 GATCGATAAGACAAA CGGCCAC CGAC GCAGCCG CCTGTCCTGCAACCA Daro_3888 4180465 - 4180148 - | competence protein ComEA helix-hairpin-helix region TERM 3835 4180468 - 4180506 + r 100 -13.1 -4.30576 | opp_overlap 4180473, overlap 4180473 TATCGCGCTGCACAA GACAACGGCCTCACCGG AATGC CCGGTGAGGCCGTTTAA TTTTAATGCTAACGG TERM 3836 4180473 - 4180501 + r 100 -21.8 -4.24384 | opp_overlap 4180473, overlap 4180468 CGCTGCACAAGACAA CGGCCTCACCGG AATGC CCGGTGAGGCCG TTTAATTTTAATGCT TERM 3837 4180501 - 4180473 - R 100 -22.5 -3.7511 | opp_overlap 4180473 4180468 CGCTGCACAAGACAA CGGCCTCACCGGA ATG CCCGGTGAGGCCG TTTAATTTTAATGCT Daro_3889 4181795 - 4180548 - | dihydroorotase TERM 3838 4181740 - 4181751 + g 76 -5.8 -4.62783 | TAGAGCGAGGCTCTG CGGT CGAC ACCG TTTTTCGGATCGATG pyrB 4182757 - 4181798 - | aspartate carbamoyltransferase catalytic subunit TERM 3839 4181939 - 4181966 + g 71 -7.6 -4.09685 | gap 1 CCCCGGGTGCATGAC GATGGCGTCCGGC TTG GCCAG-CGCCAGC TTTTGCGGGGTCAGA Daro_3891 4183259 - 4182750 - | pyrimidine regulatory protein PyrR TERM 3840 4183028 - 4183047 + gr 74 -7.8 -4.08216 | GAATGACCGTCGGCC GGCACTGC GGAT GCAGTCCC TTTTCGGCAAAGTCG Daro_3892 4183671 - 4183231 - | Holliday junction resolvase-like protein Daro_3893 4184233 - 4183673 - | hypothetical protein TERM 3841 4184043 - 4184064 + g 75 -2.2 -5.00616 | ATATCGGCGAGATTC TCGGCCTC CAGCTT GATGTCGA TTTTTTCAAGCAAAC TERM 3842 4184355 - 4184376 + G 71 -6.5 -4.21607 | CGCGGCCCTCGCCGA GGCGCAGCA GGTG TATTGCGCC TTTGTCTTCGATAGC Daro_3894 4184272 - 4185684 + | deoxyribodipyrimidine photo-lyase type I Daro_3895 4191281 - 4185681 - | response regulator receiver:CheW-like protein:ATP-binding region, ATPase-like:Hpt TERM 3843 4189301 - 4189354 + g 72 -12.3 -3.02511 | gap 1, overlap 4189312 TCACCTCTGGTTGCT GTGGC-ATCAGGGCGGCGAGCGCGGC ATC GCCGCTTTCACCGGCCAGATCGCCAG TCTTCAAAGCCTCAA TERM 3844 4189312 - 4189333 + g 79 -12.3 -3.53091 | gap 1, overlap 4189301 TGCTGTGGCATCAGG GCGGCGA-GC GCG GCATCGCCGC TTTCACCGGCCAGAT TERM 3845 4190728 - 4190753 + g 85 -7.5 -4.8048 | opp_overlap 4190751, overlap 4190709 4190717 4190742 GCTTCGGCCTCGGCT GGCTTGGTCAG CCAG CGGAGCAAGCC TTTTTGGTATAGGCC Daro_3896 4193424 - 4191304 - | chemotaxis sensory transducer Daro_3897 4193975 - 4193463 - | CheW protein Daro_3898 4194345 - 4193980 - | response regulator receiver Daro_3899 4194770 - 4194360 - | response regulator receiver TERM 3846 4195740 - 4195727 - g 70 -5.2 -4.57569 | opp_overlap 4195718 4195734, overlap 4195708 GCAGGCGCTGAAAAA CGGC TTTCGC GCCG GCATGGGGCAGTTCA Daro_3900 4194966 - 4195841 + | phosphomethylpyrimidine kinase Daro_3901 4195828 - 4196463 + | thiamine monophosphate synthase Daro_3902 4196460 - 4197743 + | glutamate-1-semialdehyde 2,1-aminomutase Daro_3903 4197740 - 4198078 + | small multidrug resistance protein TERM 3847 4199547 - 4199558 + G 84 -5.8 -5.00616 | overlap 4199543 GTGATCTTCGAACTG CAGG GCAG CCTG TTTTTTGGCACCACC Daro_3904 4198140 - 4200350 + | cyclic nucleotide-binding:Sulfate transporter/antisigma-factor antagonist STAS:xanthine/uracil/vitamin C permease:sulphate transporter Daro_3905 4201766 - 4200381 - | Mg2+ transporter protein, CorA-like TERM 3848 4201811 - 4201797 - R 73 -4.2 -4.87389 | CATTGCAAAAACAAA GTGCGA TTG TAGCAC CACCTTTGTGCGCAA mtgA 4202554 - 4201859 - | monofunctional biosynthetic peptidoglycan transglycosylase Daro_3907 4203375 - 4202551 - | shikimate dehydrogenase TERM 3849 4203065 - 4203032 - G 81 -8.1 -4.68593 | opp_overlap 4203025 CCGACCAGCGAAAAA CCGAGGTTGTTCGTG ATGT CACGAACCAGCCCAG CACCATCCGTGTTGT Daro_3908 4204262 - 4203372 - | TonB, C-terminal Daro_3909 4206172 - 4204259 - | ribonuclease II TERM 3850 4205132 - 4205157 + g 70 -10.5 -3.55801 | gap 1 AGCGATATGCACCAT TTC-CAGCCGCG ACT CGTGGCTGAGAA TTTCCAGCGATTCAT Daro_3910 4206749 - 4206180 - | hypothetical protein TERM 3851 4206439 - 4206424 - G 71 -7.6 -4.07568 | TCGCCGGTGTGAAAA TTGGCA TGAG TGCCAA CAAATTTTTCCAAAT uppP 4207558 - 4206734 - | undecaprenyl pyrophosphate phosphatase TERM 3852 4207277 - 4207259 - G 76 -10.2 -3.72893 | GATCGCCCTACCAAA GGCCAGCC CGA GGATGGCC AAGGGCAGGAAAGCG Daro_3912 4207831 - 4207592 - | hypothetical protein Daro_3913 4208177 - 4207842 - | hypothetical protein Daro_3914 4209061 - 4208297 - | hypothetical protein TERM 3853 4208663 - 4208676 + g 88 -2.3 -5.52384 | opp_overlap 4208644 4208658, overlap 4208664 CGGAGAAACACCGAC ATCCG CGGC CGGAG TTTTTTTGCTGAAAC Daro_3915 4209158 - 4210063 + | LysR family transcriptional regulator Daro_3916 4211343 - 4210135 - | hypothetical protein TERM 3854 4210249 - 4210231 - G 71 -8.8 -3.80625 | TGCCGAGAAGCCAAA GGCCGTCA GGT TGATGGCC GGGTTGAACATAAAA TERM 3855 4210290 - 4210265 - G 73 -4.7 -4.66537 | gap 1, overlap 4210287 GGGTTGAACATAAAA GGGATGTGCATC AGC GACG-ACAGCCC GAGGCAGGCGACAAA Daro_3917 4212038 - 4211340 - | ABC transporter related TERM 3856 4212108 - 4212131 + r 85 -13.2 -3.25823 | gap 1, opp_overlap 4212104 4212100 GAAGGAATCCACAGC GACGCGCCAGC TGT GCTGGC-CGTC TTGCTATGCAGGGGC TERM 3857 4212167 - 4212178 + r 70 -4.4 -4.57569 | overlap 4212161 CAGCACTCTTGGGGT GTGA CAAC TCAC TTTTTCGCCGCCTGA Daro_3918 4213476 - 4212175 - | secretion protein HlyD TERM 3858 4213367 - 4213329 - G 71 -5.8 -4.36914 | opp_overlap 4213363, overlap 4213330 4213333 TGCCGCCGGACAAAA CCACCAGCAGCACAGCCA CGA CGGCAATGCCGCCGCCGA TCAGCCACAGCCGTC Daro_3919 4214942 - 4213473 - | RND efflux system, outer membrane lipoprotein, NodT TERM 3859 4215029 - 4214994 - R 88 -8.9 -4.72386 | gap 1, overlap 4214995 TAAACGATGTAAAAA GGCCCGCCGCGAC-CA CTCGT TGAGCCGGGGCGGGCA AGGGGGGAGGCAGGG TERM 3860 4215028 - 4214995 - R 86 -12.4 -3.42347 | gap 1, overlap 4214994 AAACGATGTAAAAAG GCCCGCCGCGAC-CA CTCGT TGAGCCGGGGCGGGC AAGGGGGGAGGCAGG Daro_3920 4215478 - 4215083 - | lipoprotein signal peptide TERM 3861 4215372 - 4215402 + g 74 -11.8 -3.5393 | ACTGCCTTGCCCTTG TCGCGCATGGCCGG CAT CTGGCCGTGCATGA TTTCGAACACCTGGT TERM 3862 4215757 - 4215785 + r 100 -11.7 -5.00616 | opp_overlap 4215762, overlap 4215762 ATCGTCGACAAAAAG AAAAAGGCGGCTG AAT CAGCCGCCTTTCC TTTTTTCCAAGCCGC TERM 3863 4215780 - 4215762 - R 100 -16 -5.69262 | opp_overlap 4215762 4215757 CGACAAAAAGAAAAA GGCGGCTG AAT CAGCCGCC TTTCCTTTTTTCCAA TERM 3864 4215762 - 4215780 + r 100 -16 -4.42765 | opp_overlap 4215762, overlap 4215757 CGACAAAAAGAAAAA GGCGGCTG AAT CAGCCGCC TTTCCTTTTTTCCAA Daro_3921 4217727 - 4215811 - | thiamine biosynthesis protein ThiC TERM 3865 4216871 - 4216891 + g 73 -9.8 -3.63515 | CTGTTACGGATGATC CATTCACG CGTTT CGTGAATG TTCTTGCCGGTGGAC TERM 3866 4217026 - 4217048 + g 73 -9.9 -3.59315 | gap 1, opp_overlap 4217025 4217024 CTTGACCAGGAAATT GCG-GCCGAT GATC ATCGGCTCGC TTTCCGGGTGGTTGA TERM 3867 4218302 - 4218291 - g 72 -2.2 -4.86293 | overlap 4218296 CAAGAAAAACGAAAA CGAA GTCA TCCG CGAGGAAGAAATCAA TERM 3868 4218435 - 4218418 - g 78 -2.7 -5.03145 | gap 1, overlap 4218407 4218406 4218428 GAACTGGCCAAAAAA GCCAA-TG AAG CAGCTGGC GAACTGAAGGCTGCC Daro_3922 4218001 - 4219446 + | carbonic anhydrase Daro_3923 4219500 - 4220144 + | TetR family transcriptional regulator Daro_3924 4220205 - 4220858 + | protein-L-isoaspartate(D-aspartate) O-methyltransferase TERM 3869 4221056 - 4221085 + G 84 -10.7 -4.15044 | gap 1, overlap 4221059 GTCGTGATCTGTCAT CACGGCGGCC-GCA GCA TGCAGGTCGCCATG TTTCTTGAGCGCAAG Daro_3925 4220858 - 4221181 + | rhodanese-like protein Daro_3926 4221189 - 4222514 + | Type I secretion outer membrane protein, TolC Daro_3927 4223739 - 4222480 - | 3-deoxy-D-manno-octulosonic-acid transferase Daro_3928 4224692 - 4223739 - | lipopolysaccharide heptosyltransferase I TERM 3870 4224175 - 4224163 - G 73 -4.7 -4.68539 | overlap 4224164 AGGAAAACGACAAAA GGCCG ATG CGGCA ACCAGTCGAACCCTG TERM 3871 4224725 - 4224705 - H 81 -8.3 -4.3739 | opp_overlap 4224705, overlap 4224708 CATCGGCGGATAAAA TCACGGCTT TCG AAGCCGCAA TTATAAATGCCCGCC TERM 3872 4224722 - 4224708 - H 70 -10 -3.1733 | opp_overlap 4224705, overlap 4224705 CGGCGGATAAAATCA CGGCTT TCG AAGCCG CAATTATAAATGCCC Daro_3929 4224732 - 4225502 + | glycosyl transferase family protein Daro_3930 4225534 - 4226541 + | NAD-dependent epimerase/dehydratase Daro_3931 4226551 - 4228374 + | glutamine--fructose-6-phosphate transaminase TERM 3873 4228889 - 4228926 + GT 88 -10.5 -4.05033 | CTGTCAGGCTGGGCT CGCTTGCGCGTCATCGT CAAC GCGATGACCCGGATGCG TTTCTGTACGCTGGA Daro_3933 4229777 - 4229079 - | lyso-ornithine lipid acyltransferase apaH 4228379 - 4229209 + | diadenosine tetraphosphatase TERM 3874 4229418 - 4229393 - GT 72 -7.5 -3.92592 | gap 1, overlap 4229394 4229408 ACTCCCAATAGGAAA TGGCCA-CCGGT AAC ACCGGCCGGCCG GCAGCCAGCGCCGGC TERM 3875 4229417 - 4229394 - GT 71 -11 -2.95073 | gap 1, overlap 4229393 4229408 CTCCCAATAGGAAAT GGCCA-CCGGT AAC ACCGGCCGGCC GGCAGCCAGCGCCGG TERM 3876 4229880 - 4229850 - TR 82 -9.6 -4.27861 | overlap 4229841 4229852 4229853 AACACACAGCGAAAA GAGCGCCCCGCTGA TGA CCAGCAGGGCGATG CGGAAAATCCGGAAG TERM 3877 4229878 - 4229852 - TR 91 -12.2 -3.72985 | overlap 4229841 4229850 4229853 CACACAGCGAAAAGA GCGCCCCGCTGA TGA CCAGCAGGGCGA TGCGGAAAATCCGGA TERM 3878 4229877 - 4229853 - TR 95 -15.7 -2.83068 | overlap 4229841 4229852 4229850 ACACAGCGAAAAGAG CGCCCCGCTGA TGA CCAGCAGGGCG ATGCGGAAAATCCGG Daro_3934 4230682 - 4229930 - | ornithine-acyl[acyl carrier protein] N-acyltransferase TERM 3879 4230649 - 4230665 + g 86 -13.7 -3.47387 | overlap 4230642 4230640 TCTTCTTTTCGGGAC GGCTGCG ACC CGCAGCC TTATGGATATTTTCC Daro_3935 4231710 - 4230778 - | PfkB Daro_3936 4232790 - 4231717 - | hypothetical protein prmA 4233656 - 4232766 - | ribosomal protein L11 methyltransferase TERM 3880 4233651 - 4233637 - G 74 -6.4 -4.38154 | opp_overlap 4233628 4233627 ACATCGGTCAGAAAA CTGACA TTT TGCCAG CCCATCGCCTAAGCC Daro_3938 4235018 - 4233660 - | acetyl-CoA carboxylase biotin carboxylase subunit Daro_3939 4235517 - 4235029 - | biotin carboxyl carrier protein Daro_3940 4235962 - 4235537 - | 3-dehydroquinate dehydratase Daro_3941 4236646 - 4236056 - | hypothetical protein Daro_3942 4236697 - 4238043 + | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase TERM 3881 4238124 - 4238098 - T 100 -15.9 -5.80951 | gap 1, opp_overlap 4238098 ACCGAAAATAAAAAA GGCGCGGTGAGG CTTC CCTC-CCGCGCC TTTTTGTTACGGCTG TERM 3882 4238098 - 4238124 + T 100 -15.9 -5.07486 | gap 1, opp_overlap 4238098 ACCGAAAATAAAAAA GGCGCGGTGAGG CTTC CCTC-CCGCGCC TTTTTGTTACGGCTG Daro_3943 4240418 - 4238142 - | malic enzyme TERM 3883 4240562 - 4240541 - R 93 -8.7 -4.83169 | gap 1 AGCCGGTCATAAAAA GGGCGCGCTC ATC GA-CGCACCC CGGCTGGCAACTTCC Daro_3944 4242652 - 4240583 - | TonB-dependent receptor TERM 3884 4242677 - 4242664 - R 100 -9.5 -5.42259 | TCATCGCCAAAAAAA GCCGG TTGC CCGGC CTCCTCCAAGAATGG Daro_3945 4243502 - 4242693 - | high-affinity nickel-transporter Daro_3946 4244963 - 4243617 - | PAS/PAC sensor signal transduction histidine kinase TERM 3885 4243783 - 4243815 + gr 72 -9.7 -3.35679 | AAGGGTTCGAACAGG CGGCTCAGGTGTTCC TCG GGGATCCCCGGGCCG TTGTCGGTAAAGCGC TERM 3886 4243890 - 4243908 + gr 72 -10.2 -3.29461 | overlap 4243891 GGCGTCGGCCCGATT GGCCAGCG CAT CGCTGGCA TTCTGCACCAGATTC TERM 3887 4243891 - 4243907 + gr 84 -13.7 -2.57463 | overlap 4243890 GCGTCGGCCCGATTG GCCAGCG CAT CGCTGGC ATTCTGCACCAGATT TERM 3888 4244607 - 4244571 - GR 78 -5 -4.7497 | gap 1, overlap 4244602 GGCACGCAGGAAAAA CTCGCAGTCATGGACGC CTTC GCGGCCGAAAC-GCGAG AAGATTTCGCGCGCC TERM 3889 4244845 - 4244872 + gr 70 -9.9 -3.25668 | overlap 4244799 4244843 4244865 AGGGCGACTTCGTAC TGGAGGAGGTC GTTGTA GACCTCATCCA TCTTCTGGATGACTT Daro_3947 4245402 - 4244938 - | nickel responsive regulator Daro_3948 4245484 - 4245813 + | hypothetical protein TERM 3890 4246585 - 4246622 + G 89 -10.5 -4.43669 | gap 1 TTCACCCCCGGCCAC CCATGGCGCGATGCCGCG CTG CACGCCATCG-GCCTTGG TTTCGTTTTTTCCAT Daro_3949 4245814 - 4246881 + | hypothetical protein TERM 3891 4247093 - 4247058 - g 80 -4.1 -5.07486 | gap 2, overlap 4247060 CAGGCGGAAGAAAAA GACCTGCTGCCAGCA CTAGCCGC TGCTGGC-GCAAG-C AATCTGGCGCAGCGC TERM 3892 4247092 - 4247060 - g 75 -7.8 -4.16307 | gap 1, overlap 4247058 GGCGGAAGAAAAAGA CCTGCTGCCAGCA CTAGCCGC TGCTGGC-GCAAG CAATCTGGCGCAGCG Daro_3950 4246878 - 4247270 + | hemerythrin HHE cation binding region Daro_3951 4247483 - 4248463 + | AAA ATPase, central region Daro_3952 4248868 - 4248479 - | hypothetical protein Daro_3953 4249656 - 4248868 - | heat shock protein DnaJ, N-terminal TERM 3893 4249330 - 4249291 - G 76 -13 -3.29471 | CTGGTAGGACATGAA CATCACGGTAATCTGCAT GACC ATGCCGATCACCATGACG CCGGCGATCACCGTC TERM 3894 4251115 - 4251102 - g 70 -4.5 -4.57837 | opp_overlap 4251102 4251114, overlap 4251083 4251080 ACACGGTTCTAAAAA CCGTC TCGC AACGG TGGTTGGCTTGTGTA TERM 3895 4251437 - 4251452 + G 70 -3.3 -4.65895 | opp_overlap 4251437 TCAGAAAAGAAAAAT CAATC GGACTG GATTG TTTTTGAGTCGGGCC Daro_3954 4249835 - 4251838 + | PAS:GGDEF:hemerythrin HHE cation binding region TERM 3896 4251933 - 4251915 - f 75 -6.7 -4.35524 | overlap 4251916 CGGGCAAACCGAAAA CTTGGGC AAAAA GCCCAAA AAGGTCTGCCCAATG TERM 3897 4252726 - 4252688 - g 78 -4.5 -4.78237 | opp_overlap 4252687 4252698, overlap 4252689 GAGGGCAGAACAAAA CGCCAGGCGAGTTTCGC AAAGA GCAAAACTGGATTGGCA GAACGGGCTGCTCGA Daro_3955 4252285 - 4253439 + | filamentation induced by cAMP protein Fic Daro_3957 4254584 - 4254042 - | hypothetical protein TERM 3898 4254544 - 4254534 - G 85 -2.6 -5.40072 | TGTTTTGCAAAAAAA TAAT CCT ATTA GCACTAGCCAGAACA Daro_3958 4255550 - 4255038 - | hypothetical protein Daro_3959 4255760 - 4256920 + | integrase catalytic subunit Daro_3960 4258456 - 4257038 - | nickel-dependent hydrogenase, large subunit TERM 3899 4257850 - 4257862 + g 74 -6.2 -4.56775 | opp_overlap 4257850 4257849 CCGTGGCCAACGAAT CGCC GAACA GGCG TTTTTCGAGAAAGCT Daro_3961 4259454 - 4258453 - | uptake hydrogenase accessory protein hupU TERM 3900 4258755 - 4258768 + g 71 -6.7 -4.18018 | CGTGAGCCTGGGTGC CCTTG CAGC CAAGG TTTTCCATCAGACAG Daro_3962 4260938 - 4259451 - | two component, sigma54 specific, Fis family transcriptional regulator TERM 3901 4259518 - 4259534 + g 75 -7.9 -4.1552 | CGCGACAGCCCCAAC TCCCGGG CTG CCCGCGA TTTGTTCCAGCGGTG TERM 3902 4260405 - 4260352 - G 95 -12.4 -4.1721 | gap 2, opp_overlap 4260371 ACCGACAGGTCAAAA GGCGCAACGC-GCCCGACC-ATGTCG CAGA CGGCATTGATCGGGCTGCCCGGCGCC CGGATGAAGCCAGCC Daro_3963 4262611 - 4260935 - | formyl transferase TERM 3903 4262274 - 4262258 - G 78 -4.3 -4.7497 | overlap 4262259 CGGACGCATCAAAAA CCTGGCC GAG GCCCAGA CCGGTCCGGCATCCA Daro_3964 4262773 - 4262985 + | hypothetical protein Daro_3965 4263982 - 4262990 - | hydrogenase expression/formation protein HypE Daro_3966 4265159 - 4264035 - | hydrogenase formation HypD protein Daro_3967 4265404 - 4265159 - | hydrogenase expression/formation protein (HUPF/HYPC) Daro_3968 4266008 - 4265457 - | hypothetical protein Daro_3969 4266291 - 4266001 - | hydrogenase expression/formation protein (HUPF/HYPC) Daro_3970 4266770 - 4266291 - | HybD peptidase TERM 3904 4266813 - 4266788 - R 100 -11.8 -5.47399 | overlap 4266789 TCAATTCCAAAAAAA CGGGGCGCGA GCATTG TCGCGCCCCC AACGCAGAGTTCTCT TERM 3905 4266812 - 4266789 - R 100 -15.3 -3.87355 | overlap 4266788 CAATTCCAAAAAAAC GGGGCGCGA GCATTG TCGCGCCCC CAACGCAGAGTTCTC Daro_3971 4268550 - 4266838 - | nickel-dependent hydrogenase, large subunit TERM 3906 4267490 - 4267519 + g 70 -10 -3.51825 | overlap 4267513 TCGGTGTAGTTCGGC GTCGTTTCACCC TTGTAC GGGTGCAGCGAC TTGTCGTTGCCGTCG Daro_3972 4269732 - 4268572 - | putative hydrogenase 2 b cytochrome subunit TERM 3907 4268910 - 4268881 - G 74 -6.3 -4.5448 | gap 1 CAGCCAGAAAAAGAA GGCCTCGAGGCTGG GCG CCAGCG-CATGGCC GAGCGCGCCGCGCAC Daro_3973 4270784 - 4269729 - | hydrogenase 2 protein HybA Daro_3974 4271970 - 4270786 - | Ni-Fe hydrogenase, small subunit:twin-arginine translocation pathway signal Daro_3975 4273841 - 4272270 - | GGDEF Daro_3976 4274632 - 4273850 - | hypothetical protein Daro_3977 4277110 - 4274819 - | hydrogenase maturation protein HypF TERM 3908 4275084 - 4275064 - G 70 -4.5 -4.56597 | opp_overlap 4275065, overlap 4275065 CCGTGGCGTGAAAAA GCGCCGCCC CGT AGGCTGCGT TGTCCTTGCAGCCCA TERM 3909 4277106 - 4277064 - G 87 -10.4 -4.38129 | opp_overlap 4277098, overlap 4277055 4277058 4277089 4277091 ATATAAGGACGAAAA CCGACCCCCTGCACCAGACC ACG AATACGGAGCAGGCGGCCGG TCATCGGCGGCCTAC Daro_3978 4278176 - 4277118 - | hydrogenase accessory protein HypB Daro_3979 4278531 - 4278190 - | hydrogenase expression/synthesis, HypA Daro_3980 4279450 - 4278524 - | hypothetical protein Daro_3981 4279917 - 4279447 - | HupJ protein Daro_3982 4280128 - 4279928 - | rubredoxin-type Fe(Cys)4 protein Daro_3983 4281002 - 4280139 - | HupH hydrogenase expression protein, C-terminal region Daro_3984 4281457 - 4280999 - | hydrogenase-1 expression HyaE TERM 3910 4281388 - 4281416 + g 84 -10.9 -4.07885 | opp_overlap 4281367 AAAATCCATGTTTTT GCTGCATGCGGCC AAT GGCCGTTTCCAGC TTTTCGAGCGAGGTC Daro_3985 4281756 - 4281454 - | hydrogenase expression/formation protein (HUPF/HYPC) TERM 3911 4281540 - 4281517 - G 73 -5.2 -4.59511 | overlap 4281528 AAGATCGGCGAAAAA GTCGGAGAAA TCGG TTTCACCGGC ATGGGCGGCAGCGAG Daro_3986 4282370 - 4281756 - | HyaD peptidase TERM 3912 4282420 - 4282388 - R 86 -6.2 -5.03145 | gap 1, overlap 4282389 GAACCTCTGAAAAAA CGCCCCGG-GCACAC TTCC ATGCACACCGGGGCC AACGCAAGGTAAACC TERM 3913 4282419 - 4282389 - R 77 -9.7 -3.61164 | gap 1, overlap 4282388 AACCTCTGAAAAAAC GCCCCGG-GCACAC TTCC ATGCACACCGGGGC CAACGCAAGGTAAAC Daro_3987 4283245 - 4282541 - | nickel-dependent hydrogenase b-type cytochrome subunit TERM 3914 4283298 - 4283252 - R 77 -11.4 -3.24456 | gap 1 AGAGAGCATGATTAA GCCTCCTGACGGGCCGCC-CC GAGGGA GGCGGCGCCCCCTCGGGGGGC AGCGAACAACGTGAG Daro_3988 4285143 - 4283347 - | nickel-dependent hydrogenase, large subunit Daro_3989 4286236 - 4285145 - | Ni-Fe hydrogenase, small subunit:twin-arginine translocation pathway signal TERM 3915 4289435 - 4289421 - g 77 -11.4 -3.62597 | opp_overlap 4289414, overlap 4289430 CTGATGGCCGAAGAA CGCCAG CAA CTGGCG GCCAGCGTGTTCGAC TERM 3916 4289888 - 4289904 + G 77 -7.9 -4.38927 | overlap 4289882 ACAGGCCGAGCGCAG CGGCAAG ACG CTGGCCG TTTGTTATCTCGACC TERM 3917 4291195 - 4291182 - g 80 -3.1 -5.03747 | opp_overlap 4291171, overlap 4291171 AAACGCTGGAAAAAA CAGCT TTAC AGCTA TCTGGATAACAGCCG Daro_3990 4286502 - 4291499 + | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) TERM 3918 4291508 - 4291484 - f 74 -6.4 -4.56775 | AGTGCTGCTTAAAAA TCAGATCGGC AAGTA GCAGATCCGA CCGCAGCCCCCCGTT Daro_3991 4291616 - 4292230 + | cytochrome c biogenesis protein CcmA TERM 3919 4292682 - 4292727 + G 76 -15.3 -2.65264 | gap 1 TTGTCCGGCATCGGT GC-CATCGGCGCCGCGCTGACC CTC GGTCTGCGTGGCGGCGGCGTGC TGCTGTCGCTGCTGG Daro_3992 4292244 - 4292912 + | cytochrome c-type biogenesis protein CcmB Daro_3993 4292909 - 4293655 + | cytochrome c-type biogenesis protein CcmC Daro_3994 4293652 - 4293852 + | heme exporter protein D Daro_3995 4293849 - 4294310 + | CcmE/CycJ protein TERM 3920 4294475 - 4294491 + G 71 -9.4 -3.72576 | CTCACCTTCTCTTTT GCCTGC CTGGT GCAGGC TTTCGTGACCAACGA Daro_3996 4294313 - 4296307 + | cytochrome c-type biogenesis protein CcmF TERM 3921 4296672 - 4296661 - g 74 -5.8 -4.4768 | GATGAAGAGAAGAAA CTGG CTTT CCAG CGCGCCAATCAATGG Daro_3997 4296304 - 4296888 + | periplasmic protein thiol:disulfide oxidoreductase DsbE Daro_3998 4296885 - 4297373 + | cytochrome C biogenesis protein TERM 3922 4297768 - 4297752 - g 73 -10.1 -3.65902 | TGGACCCGATGCAAA CCGCTGC CCC GCAGCAG ATGACGCCGGAAAAG Daro_3999 4297370 - 4298209 + | TPR repeat-containing protein Daro_4000 4298221 - 4298700 + | periplasmic nitrate reductase maturation protein NapF Daro_4001 4298967 - 4298704 - | hypothetical protein Daro_4002 4298997 - 4300532 + | hypothetical protein TERM 3923 4300556 - 4300537 - T 100 -12.8 -5.49234 | opp_overlap 4300537 ACAGGCAATAAAAAA GGCCCGCC ATTT GGCGGACC TTTCTTGCGTGTGAG TERM 3924 4300537 - 4300556 + T 91 -10.6 -4.23213 | opp_overlap 4300537 ACAGGCAATAAAAAA GGCCCGCC ATTT GGCGGACC TTTCTTGCGTGTGAG Daro_4003 4302614 - 4300611 - | Acetyl-CoA carboxylase, biotin carboxylase TERM 3925 4301308 - 4301290 - G 71 -8.8 -3.72576 | TGCTTGGGGATGAAA CCGGTATC GAA GATGCCGG AATGGAAAACCGGAT Daro_4004 4304171 - 4302636 - | carboxyl transferase TERM 3926 4303300 - 4303285 - G 75 -7.6 -4.20918 | TGCAATTCGAAGAAA TCGTTG TCAT CAACGA CCTTGACCAGCAATT TERM 3927 4303671 - 4303655 - G 75 -7.9 -4.16842 | TCGACGGCGAATAAA CCGCACC ACC GGCGCAG GGGCCCATGATCATG Daro_4005 4305195 - 4304206 - | arginine/ornithine transport system ATPase Daro_4006 4307374 - 4305224 - | methylmalonyl-CoA mutase TERM 3928 4306124 - 4306160 + g 71 -6.4 -4.22652 | opp_overlap 4306126 CTCGATTTCCTGAAT GATGCCCCAGGCCTTG TCAGC CATGTCCTGGGTCAGC TTTTCCATCATGTAG TERM 3929 4307091 - 4307046 - G 73 -10.3 -3.57144 | overlap 4307047 4307056 GTCGCCAGGTCGAAA GCCACCGAAACGCCCTGACCG CCGG CGGCCAGCGCCTTGCGGTAGA AAGCATTGGAAGCCT TERM 3930 4307090 - 4307047 - G 73 -13.8 -2.74144 | overlap 4307046 4307056 TCGCCAGGTCGAAAG CCACCGAAACGCCCTGACCG CCGG CGGCCAGCGCCTTGCGGTAG AAAGCATTGGAAGCC Daro_4007 4307505 - 4308206 + | GntR family transcriptional regulator Daro_4008 4309502 - 4308216 - | chemotaxis sensory transducer TERM 3931 4308608 - 4308628 + gT 72 -6.8 -4.15044 | opp_overlap 4308617 GCATTGAGGTGCTGA TCGCCGAA ATCGC TGCGGCGA TTTCTTCGGCCGAAC TERM 3932 4309148 - 4309092 - GT 74 -10.5 -3.1876 | overlap 4309094 AAGCTGATCCAGCAA CACCTGCATCTGGGCCAGGACGGTACC GAA GGTGCCATGCAGGCCCGGTCGCTGGAG CCTTCGCCATGTCCG TERM 3933 4309146 - 4309094 - GT 77 -11.7 -3.1552 | overlap 4309092 GCTGATCCAGCAACA CCTGCATCTGGGCCAGGACGGTACC GAA GGTGCCATGCAGGCCCGGTCGCTGG AGCCTTCGCCATGTC Daro_4009 4309995 - 4309477 - | PAS TERM 3934 4310100 - 4310077 - R 100 -15.3 -4.66537 | opp_overlap 4310077 TCGCCCAATAGAAAA CCCCGGCAG TTTTGG CTGCCGGGG TTTCGATTGGCTCAA TERM 3935 4310077 - 4310100 + r 100 -16 -3.76952 | opp_overlap 4310077 TCGCCCAATAGAAAA CCCCGGCAGT TTTG GCTGCCGGGG TTTCGATTGGCTCAA actP 4311795 - 4310122 - | acetate permease TERM 3936 4311779 - 4311794 + g 71 -5.4 -4.30023 | overlap 4311771 AGCGCGGTAATGAGT TGTGTC AGGC GACGCA TTATTTATTCTCCTT Daro_4011 4312115 - 4311795 - | hypothetical protein TERM 3937 4312055 - 4312045 - G 71 -6.8 -4.18762 | opp_overlap 4312049, overlap 4312046 4312048 AACGTCCAGGCAAAA CGAC CCC GTCG AGCGACGAGTTCCTG Daro_4012 4312242 - 4313018 + | enoyl-CoA hydratase/isomerase Daro_4013 4313839 - 4313030 - | hypothetical protein TERM 3938 4313225 - 4313198 - G 79 -9 -4.17296 | overlap 4313199 CGGCAGATAGACAAA GCCCAGGCTGCC AGGC GGCAGGCCGGGA TGCGCCCAGCCGTTC TERM 3939 4313224 - 4313199 - G 72 -12.5 -3.09896 | overlap 4313198 GGCAGATAGACAAAG CCCAGGCTGCC AGGC GGCAGGCCGGG ATGCGCCCAGCCGTT TERM 3940 4313769 - 4313725 - G 75 -7.7 -4.14739 | overlap 4313754 CGAGCCAGGCGAAAA TCATGGTCAGCACCGGCACCA CCA CGACACCGCCGCCGACCCCGA GCAGGCCGGCAAAGA TERM 3941 4313802 - 4313787 - G 77 -8.2 -4.41616 | AGGCCGGCAAAGAAA CCAGCG CAGG CGCCGG TCAGCAAATAGGCCG Daro_4014 4314796 - 4313882 - | Acyl transferase region TERM 3942 4314068 - 4314051 - G 70 -10.5 -3.48395 | ACGGCCTGCAGACAA GCCGCCC AGTC GAGCGGC GTGCAGATCTGGCGG TERM 3943 4314434 - 4314412 - G 73 -14.2 -2.73364 | CGTCGAGTCCAAGCA CGGCGAGCAT GCC ATGCTCGCCA GCCGCGGCACCATCC TERM 3944 4314505 - 4314525 + g 73 -9.7 -3.85817 | opp_overlap 4314504 4314501 4314500 TGGCCGTAAAGGCAC TGGCCGC ACTGCAC GCGGCCA TTTCTCCCAGCGAAT Daro_4015 4315691 - 4314798 - | triphosphoribosyl-dephospho-CoA protein TERM 3945 4314859 - 4314830 - G 71 -6.4 -4.25104 | gap 1 GTTCGGCCAGGAAAA GC-GTGACGCCGA GCAGG TCGGCGCTACCGC CGGGGCTGAGATTCG Daro_4016 4316352 - 4315684 - | malonate decarboxylase TERM 3946 4316041 - 4316007 - G 71 -6.4 -4.14739 | gap 1, overlap 4316008 CCAGTGAGCCGAAAA CGCCGAGGCGTACCG AGCAGG CGGCA-GCCCCGACA TCCAGCCGGCGTAAA Daro_4017 4317079 - 4316357 - | malonate decarboxylase gamma subunit Daro_4018 4317978 - 4317076 - | malonate decarboxylase subunit beta Daro_4019 4318289 - 4317975 - | malonate decarboxylase delta subunit TERM 3947 4318169 - 4318183 + g 76 -9.2 -4.0896 | overlap 4318170 GGACGATGCAGGCCG TCGGCG TAT CGCCGG TTTTGACCAGAATTT Daro_4020 4319959 - 4318295 - | alpha subunit of malonate decarboxylase TERM 3948 4319880 - 4319915 + g 76 -12.4 -3.28924 | gap 1 TTCTGGCCAGCCAGG CCGAGGCTGGCCGCCCG TTC CAGGCGGCGCGCC-CGG TTCTGGCGCAGGCTG Daro_4021 4321325 - 4319973 - | TRAP dicarboxylate transporter, DctM subunit Daro_4022 4321878 - 4321327 - | tripartite ATP-independent periplasmic transporter DctQ Daro_4023 4322900 - 4321875 - | TRAP dicarboxylate transporter- DctP subunit TERM 3949 4322496 - 4322507 + g 71 -7.2 -4.16842 | opp_overlap 4322482 ATTGGCCAGCGCCTT GCCG ATCT CGGC TTTCTTCCAGCTCAC Daro_4024 4323065 - 4323784 + | GntR family transcriptional regulator Daro_4025 4324590 - 4323790 - | hypothetical protein TERM 3950 4324124 - 4324112 - G 100 -10.5 -4.94058 | GGAATCGAAAGAAAA CCGCC ACC GGCGG CCACCATGCTTGAAA TERM 3951 4324275 - 4324260 - G 71 -6 -4.33105 | overlap 4324251 4324249 4324248 4324261 CAATGATGACGAAAA TGGCCG TCAT CGGCCC GGTCGGCACCTGACC TERM 3952 4324424 - 4324410 - G 70 -10 -3.41836 | overlap 4324408 ACAGCGAGGTAAAGA CGATGG TCG CCATCG AGGTGCCGAGCGCCA Daro_4026 4325048 - 4324587 - | hypothetical protein TERM 3953 4325101 - 4325065 - R 88 -8.8 -4.65895 | gap 1, opp_overlap 4325066 4325071, overlap 4325071 GCTTGCACCCAAAAA TGGAAACGGGTGGCAGA TTGC TCTGCCACCCGTTGG-A TTTGGTCCCCGCGAG TERM 3954 4325066 - 4325101 + r 79 -10.4 -3.72576 | opp_overlap 4325065 4325071, overlap 4325071 CTTGCACCCAAAAAT GGAAACGGGTGGCAGA TTGC TCTGCCACCCGTTGGA TTTGGTCCCCGCGAG TERM 3955 4325071 - 4325096 + r 100 -19.1 -3.30701 | opp_overlap 4325071 4325065, overlap 4325066 ACCCAAAAATGGAAA CGGGTGGCAGA TTGC TCTGCCACCCG TTGGATTTGGTCCCC TERM 3956 4325096 - 4325071 - R 100 -19.1 -4.00407 | opp_overlap 4325066 4325071, overlap 4325065 ACCCAAAAATGGAAA CGGGTGGCAGA TTGC TCTGCCACCCG TTGGATTTGGTCCCC Daro_4027 4325648 - 4325313 - | cell division protein ZapA Daro_4028 4325847 - 4325650 - | hypothetical protein TERM 3957 4326175 - 4326163 - H 79 -4.8 -4.96848 | GGCCTGAGACAAAAA GTGG AAGTG CCAC GGGGTAGTGGCGCCG TERM 3958 4326485 - 4326495 + G 74 -6.8 -4.34402 | opp_overlap 4326485 4326487 4326488 CGACATCGTCAACAA CACC GCC GGTG TTTTCGTATCCACCG Daro_4029 4326273 - 4328432 + | TonB-dependent receptor Daro_4030 4328613 - 4330754 + | TonB-dependent receptor:Lipocalin TERM 3959 4331100 - 4331134 + G 80 -10.6 -4.07687 | ATGTTTGCCATCCTG GTCGGCCTGCCGGTGC TCG GTATCGACGGGCTGGC TTTTGCCGGGGCACT Daro_4031 4330779 - 4331756 + | transport system permease protein Daro_4032 4331753 - 4332526 + | ABC transporter related TERM 3960 4332584 - 4332568 - g 70 -4.3 -4.5448 | overlap 4332569 TATGCAGAAAAAGAA GGCCGTC ATC GACAGCA AGATCGAGGCGGCTC Daro_4033 4332530 - 4333120 + | cob(I)yrinic acid a,c-diamide adenosyltransferase TERM 3961 4333898 - 4333911 + G 78 -5.2 -4.83615 | overlap 4333890 CGCTGACCGCACTTG GCGC CGAACT GCGC TTTTTCTCACCGGTC Daro_4034 4333120 - 4334403 + | cobyrinic acid a,c-diamide synthase Daro_4035 4334504 - 4335370 + | import inner membrane translocase, subunit Tim44 TERM 3962 4335419 - 4335388 - f 77 -12.2 -2.76261 | opp_overlap 4335390, overlap 4335387 CCTGAAGTCTGAAAT TGGCCGGCAAGCGC ATCA ACGCTTGCCGGCTT TTTCATTTCTGCCCA TERM 3963 4335390 - 4335417 + F 100 -18.5 -5.04601 | opp_overlap 4335388 4335387 TGAAGTCTGAAATTG GCCGGCAAGCG CATCAA CGCTTGCCGGC TTTTTCATTTCTGCC TERM 3964 4337476 - 4337464 - g 76 -5.5 -4.59773 | overlap 4337474 GTCGAGGCTGAAAAA CGGCT GAA AACCG AATTCGGCAAGAGCC Daro_4037 4335904 - 4337883 + | response regulator receiver:ATP-binding region, ATPase-like:histidine kinase, HAMP region:histidine kinase A, N-terminal TERM 3965 4337913 - 4337861 - T 81 -6.8 -4.64144 | gap 1, overlap 4337851 4337862 AAGAAGCCCGAAAAA CGCCGCTCAGCTCGAACAGCTGACC TCCA GGCC-GCTGGCCCAGTCGGGCGGCA AGGCGGCCAGATCGT Daro_4038 4339366 - 4337867 - | hypothetical protein TERM 3966 4338926 - 4338896 - G 76 -12.4 -3.37796 | opp_overlap 4338895 CCCGATCACGCACAA GGCCCGCGTCGTCG GCA CGCCGAGGCCGGCC ATCGCTTCCGAACAA Daro_4039 4340484 - 4339471 - | Beta-lactamase-like TERM 3967 4340523 - 4340538 + H 73 -11.8 -2.63596 | TAGGTGCCTATCATC GCGCCG AATC CGGCGC TCGTCTACACTCACG Daro_4040 4340556 - 4340774 + | hypothetical protein Daro_4041 4341885 - 4340782 - | YeeE/YedE TERM 3968 4341355 - 4341368 + g 74 -3.8 -4.8622 | AATGGCGATGACCGC CAGC AGGAAG GCTG TTTTTGCTTCCAGAC Daro_4042 4342565 - 4341888 - | ExsB Daro_4043 4342662 - 4343828 + | extracellular ligand-binding receptor TERM 3969 4344055 - 4344083 + G 70 -12.5 -2.87132 | GGCCGTGCTCGGCCT GCTGCTGGAAC TGTCATT GTTCCGGCAGC TGTATAAGCGCGACC TERM 3970 4344322 - 4344312 - g 79 -8.2 -4.56597 | TGCTCGTGGCAAAAA GCCG GGT CGGC ATGTGGGTGCGCGCC Daro_4044 4343825 - 4344739 + | inner-membrane translocator TERM 3971 4344916 - 4344945 + G 76 -7 -4.56597 | overlap 4344933 CTGGTGCTCGGTTTC GGCGGCATGTTC TCGCTC GGCCACGCCGCC TTTTTCGGGGCCGGC Daro_4045 4344739 - 4345686 + | inner-membrane translocator Daro_4046 4345679 - 4346434 + | ABC transporter related TERM 3972 4346779 - 4346794 + G 76 -9 -4.08216 | overlap 4346751 GAGCCATGGACACCG GCTCGT GTCT ACGAGC TTTTCCCCCACCTGC Daro_4047 4346431 - 4347141 + | ABC transporter related Daro_4048 4349357 - 4347138 - | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) TERM 3973 4348009 - 4347991 - G 74 -6.6 -4.41348 | opp_overlap 4347981 4348001 GCGGTGTCAAAGAAA CGGATTGC ATT GCGACCCG CATCCTTGGCTTTGT TERM 3974 4349530 - 4349517 - R 76 -8.1 -4.2803 | GACCGTAAGGTAAAA GGGCT AGCA AGCCC TAAAACAGGCAACGT Daro_4049 4349936 - 4349574 - | hypothetical protein Daro_4050 4350589 - 4349951 - | radical SAM family protein Daro_4051 4351321 - 4350590 - | hypothetical protein Daro_4052 4351867 - 4351325 - | OmpA/MotB tolB 4353199 - 4351886 - | translocation protein TolB TERM 3975 4352218 - 4352198 - G 82 -12.6 -3.57792 | GTAGCTACCTTCAAA GGTGACGC GCTTG GCGTCACC GCCGCTGGCGCCGAC Daro_4054 4354025 - 4353189 - | TonB, C-terminal Daro_4055 4354439 - 4354032 - | biopolymer transport protein ExbD/TolR Daro_4056 4355120 - 4354443 - | MotA/TolQ/ExbB proton channel Daro_4057 4355539 - 4355117 - | 4-hydroxybenzoyl-CoA thioesterase Daro_4058 4356369 - 4355536 - | hypothetical protein TERM 3976 4355672 - 4355658 - G 70 -3.4 -4.60797 | overlap 4355660 4355668 GCGCCAGACACAAAA GCGCCC ACA AGGCCC CATTCGGCCGGTAGA Daro_4059 4357786 - 4356392 - | hypothetical protein TERM 3977 4357768 - 4357731 - G 81 -8.3 -4.66264 | gap 1 TAAAAGCCGCAAAAA GCCTGCGC-TGAGCCAAC TAC GGCGGCTAACGCGCTGGC AACGAGCAATTTCTT ruvB 4358932 - 4357856 - | Holliday junction DNA helicase B Daro_4061 4359984 - 4358929 - | hypothetical protein ruvA 4360565 - 4359987 - | Holliday junction DNA helicase motor protein TERM 3978 4360063 - 4360073 + g 75 -8.2 -4.16837 | overlap 4360036 4360066 GGCAGTTGCTTCATG GCCG AGG CGGC TTCTTTCTCGTTGTA Daro_4063 4361154 - 4360615 - | crossover junction endodeoxyribonuclease RuvC Daro_4064 4362002 - 4361151 - | hypothetical protein TERM 3979 4361635 - 4361653 + g 71 -8.8 -3.80855 | opp_overlap 4361622 AAGCCCAGCCCCAAG CCGGCC CATTGCC GGCCGG TTACTTTTTCACCGA Daro_4065 4362508 - 4362002 - | hypothetical protein Daro_4066 4363079 - 4362603 - | hypothetical protein TERM 3980 4363139 - 4363108 - R 100 -13 -3.95584 | GCTGCAGCAAGCAAA GCCACGAACTCCCC AGGC GTGGAATCCGTGGC GGGAAACATCAGTCT Daro_4067 4363873 - 4363148 - | hypothetical protein TERM 3981 4363867 - 4363877 + g 71 -6.8 -4.19817 | opp_overlap 4363866 CCCACTTGGAATGAC CAGC CAT GCTG TTTTCCCTGAATGCA Daro_4068 4364033 - 4365658 + | hypothetical protein Daro_4069 4365774 - 4366442 + | hypothetical protein TERM 3982 4366467 - 4366501 + F 100 -17.4 -2.78463 | opp_overlap 4366473 4366476, overlap 4366473 4366476 TTCACATACTCTTTT TAGAAACAATAGGGGT CTG ACCCCTATTGTTTCGA TATGGTGAGCAGCCT TERM 3983 4366473 - 4366495 + F 100 -15 -3.727 | opp_overlap 4366473 4366476, overlap 4366467 4366476 TACTCTTTTTAGAAA CAATAGGGGT CTG ACCCCTATTG TTTCGATATGGTGAG TERM 3984 4366495 - 4366473 - f 100 -15 -3.86015 | opp_overlap 4366473 4366467 4366476, overlap 4366476 TACTCTTTTTAGAAA CAATAGGGGT CTG ACCCCTATTG TTTCGATATGGTGAG TERM 3985 4366476 - 4366492 + F 86 -10.9 -3.99315 | opp_overlap 4366476 4366473, overlap 4366473 4366467 TCTTTTTAGAAACAA TAGGGGT CTG ACCCCTA TTGTTTCGATATGGT TERM 3986 4366492 - 4366476 - f 88 -10.9 -4.06419 | opp_overlap 4366473 4366467 4366476, overlap 4366473 TCTTTTTAGAAACAA TAGGGGT CTG ACCCCTA TTGTTTCGATATGGT TERM 3987 4367440 - 4367458 + G 74 -5.3 -4.4891 | gap 1, overlap 4367440 4367441 CCGGGAAAAGCAGCT G-GCCCAT CACG ATGGGCAC TTTTATCGTCATGCC Daro_4070 4366614 - 4367669 + | periplasmic phosphate binding protein TERM 3988 4367684 - 4367718 + F 100 -15.2 -3.85698 | gap 1, opp_overlap 4367691, overlap 4367691 ACTGCCGGACCTCAA CGCAAAACGCCTCGC CTTAGC GCGAGGCGTTTT-CG TTTCTGCAGACCGAA TERM 3989 4367691 - 4367712 + F 100 -13 -4.61873 | opp_overlap 4367691, overlap 4367684 GACCTCAACGCAAAA CGCCTCGC CTTAGC GCGAGGCG TTTTCGTTTCTGCAG TERM 3990 4367712 - 4367691 - f 100 -13 -4.2803 | opp_overlap 4367691 4367684 GACCTCAACGCAAAA CGCCTCGC CTTAGC GCGAGGCG TTTTCGTTTCTGCAG Daro_4071 4367975 - 4368448 + | hypothetical protein Daro_4072 4368616 - 4369419 + | hypothetical protein Daro_4073 4369480 - 4369923 + | hypothetical protein Daro_4074 4369966 - 4370313 + | glutathione-dependent formaldehyde-activating, GFA TERM 3991 4370360 - 4370327 - T 83 -12.4 -3.28791 | overlap 4370330 AGGGCGTCGTCAGAA GAGCATCGGGGCCG CTGAAC CAGCCCCGATGACC CAACTCAGGTGCGCC TERM 3992 4370357 - 4370330 - T 89 -14.9 -2.52623 | overlap 4370327 GCGTCGTCAGAAGAG CATCGGGGCCG CTGAAC CAGCCCCGATG ACCCAACTCAGGTGC Daro_4075 4371249 - 4370365 - | hypothetical protein TERM 3993 4370642 - 4370610 - G 90 -14.7 -3.64912 | CACCGAGATAGACAA CCGCCGCCCCGGCGC GCG GCGGCACGACGGCGG GCAACTGGGCACCGC Daro_4076 4371592 - 4371263 - | chorismate mutase TERM 3994 4371428 - 4371450 + g 70 -3.3 -4.63218 | gap 1, overlap 4371443 CTGCACCACCCGCGG CGG-GGCCGG AACT TCGGCAGCCG TTTTCTTGAAACCAG TERM 3995 4371636 - 4371660 + H 100 -13.5 -3.80858 | opp_overlap 4371636 AGGGGCAAACAAAAA GGCCGCGGGGT TCA AATCCGCGGCC TTTGCTGAATTCTGG TERM 3996 4371660 - 4371636 - H 100 -11.4 -5.27938 | opp_overlap 4371636 AGGGGCAAACAAAAA GGCCGCGG GGTTCAAAT CCGCGGCC TTTGCTGAATTCTGG Daro_4077 4371898 - 4372773 + | LysR family transcriptional regulator TERM 3997 4372963 - 4372976 + F 73 -9.5 -3.57309 | CCCTCACGCGGCCCT CCGGC CACT GCCGG TTTCACCCCATTTTG Daro_4078 4373004 - 4373918 + | branched chain amino acid: 2-keto-4-methylthiobutyrate aminotransferase / branched chain amino acid aminotransferase Daro_4079 4373976 - 4374542 + | cytochrome c family protein Daro_4080 4375509 - 4374526 - | LysR family transcriptional regulator TERM 3998 4375309 - 4375284 - G 70 -4.5 -4.57073 | CATGGCGGGCAAAAA GCGGGATGCCG AGGG CGGCTTCGAGC TGCGTCAGCCGGTGG TERM 3999 4375471 - 4375490 + g 71 -7 -4.27617 | TGAATAATACCAATT GCCCTGCC TGCT GGCGCGGC TTTTAATACGGTCTG Daro_4081 4375565 - 4376410 + | hypothetical protein Daro_4082 4376435 - 4376824 + | PTS system fructose subfamily IIA component Daro_4083 4376829 - 4377098 + | phosphoryl transfer system, HPr TERM 4000 4378190 - 4378239 + G 72 -12.1 -3.01791 | opp_overlap 4378190 4378191 CCGGGTCAAGACCAA TCCGGCCCTCGGCCGGCGG GCCATCCGCCTG TCGCTGGCCGAGCCCCGGA TGTTCCAGACCCAGT TERM 4001 4378415 - 4378386 - g 89 -10.7 -4.56597 | CTGCGCGGCGAAAAA GCCACCTTCGACG AAAA CATCGAAGTCGGC GGCATGATCGAAATC Daro_4084 4377105 - 4378847 + | phosphoenolpyruvate--protein phosphotransferase TERM 4002 4379331 - 4379319 - g 70 -3.3 -4.59853 | opp_overlap 4379330 GCAATGGCTGAAAAA GCAGA ATC TCGGC GACGTTCCCGTCCGC TERM 4003 4379559 - 4379547 - g 73 -4.7 -4.59081 | opp_overlap 4379547 4379548 4379556, overlap 4379548 CAAAGGTATAGAAAA GGCCC TCT GGGCA TTTGCCGCCACGCCT Daro_4085 4378840 - 4379694 + | ABC-type phosphate/phosphonate transport system periplasmic component-like protein TERM 4004 4380027 - 4379979 - g 79 -8.9 -4.25566 | gap 3 AACAATGACGGAAAA CTGGTGGCCAGCAGCGGCTG-GCC GGAA GGCGCAGCC-CTGCCG-CCAGCCG ACCCGCACCTCAATA Daro_4086 4379691 - 4381586 + | response regulator receiver:ATP-binding region, ATPase-like:histidine kinase, HAMP region:histidine kinase A, N-terminal Daro_4087 4382189 - 4381602 - | Sel1 repeat-containing protein TERM 4005 4382332 - 4382307 - H 81 -13.5 -2.70932 | opp_overlap 4382313, overlap 4382309 4382313 CCTTCTTTGGAATTA GACAAATTGTC GCGC GACAATTTGTC ACATTCCCGCCCCCC TERM 4006 4382427 - 4382448 + G 100 -15.1 -4.3534 | TCGCATCCATCCGTT GGCGGCGGC GTTG GCCGTCGCC TTTTCATCGTTGGCA Daro_4088 4382404 - 4384656 + | TonB-dependent receptor TERM 4007 4384668 - 4384700 + F 77 -7 -4.56597 | gap 1, opp_overlap 4384666, overlap 4384674 TTAAGCCATTGAACC TGGCAA-GCCCCGGC CCTG GTCGGGGCTTTATCA TTTTTGGACAAGGAA TERM 4008 4384674 - 4384693 + F 95 -12.8 -4.2687 | opp_overlap 4384666, overlap 4384668 CATTGAACCTGGCAA GCCCCGGC CCTG GTCGGGGC TTTATCATTTTTGGA TERM 4009 4384878 - 4384846 - g 81 -13.6 -3.28712 | gap 2, opp_overlap 4384871 4384871, overlap 4384848 CGTCCGTCTGGACAA CATGGCGAACGATGGC CTG GCCA-CGTTCGCCA-G CCTGGCCATCGCTGG TERM 4010 4384877 - 4384848 - g 89 -17.3 -3.21276 | gap 1, opp_overlap 4384871 4384871, overlap 4384846 TCCGTCTGGACAACA TGGCGAACGATGGC CTG GCCA-CGTTCGCCA GCCTGGCCATCGCTG Daro_4089 4384721 - 4385296 + | hypothetical protein Daro_4090 4385431 - 4387548 + | TonB-dependent receptor Daro_4091 4387542 - 4388750 + | BNR repeat-containing glycosyl hydrolase Daro_4092 4388747 - 4389217 + | signal peptide protein Daro_4093 4389222 - 4389908 + | TonB, C-terminal TERM 4011 4389926 - 4389953 + T 83 -12.6 -3.29704 | overlap 4389925 4389921 CTGGAATGTGGACGT GACGACGGGGAC CGAA GTCCCCGCCGGC TATCTTTGGTAACAA TERM 4012 4390150 - 4390109 - T 71 -10.9 -2.84634 | overlap 4390123 GTCGAGACCAGTACA CCCCCATCCAAAAACACTC AGCG GAATGCCCTTGGGTGGAGG TGAGGGGAATCGAAC Daro_4094 4390807 - 4390271 - | hypothetical protein TERM 4013 4390320 - 4390355 + g 100 -17.6 -3.60627 | opp_overlap 4390314 4390351 CCGAATGCATCGCGC GAGCGTTCGGTCGAAG TGAG CGTCGACCGAACGCGC TTTGAGGTACCGTCG Daro_4095 4391401 - 4390808 - | riboflavin synthase subunit alpha TERM 4014 4391140 - 4391150 + g 75 -8.2 -4.14392 | CGATCACGTCTGACA GGCG CAG CGCC TTTTCCAGGTTCACC TERM 4015 4392090 - 4392074 - g 72 -10.9 -3.38072 | opp_overlap 4392072, overlap 4392089 GGTACGCAAGATCAA GCTCGTT GCC AACGAGC GCTTCAATCGCGTCG Daro_4096 4391529 - 4392668 + | extracellular ligand-binding receptor TERM 4016 4392715 - 4392679 - f 100 -17.3 -3.4617 | overlap 4392680 AGTAAGACCAACGAA CCGCAGTGCCCGGCC CGGATGC GGCCGGGCACTGCAT GGTAGACTTCCCCCT TERM 4017 4392714 - 4392680 - f 100 -20.8 -2.66979 | overlap 4392679 GTAAGACCAACGAAC CGCAGTGCCCGGCC CGGATGC GGCCGGGCACTGCA TGGTAGACTTCCCCC TERM 4018 4393036 - 4392994 - g 79 -9 -4.21194 | opp_overlap 4392998, overlap 4392997 4392998 GCTGATCAGCGAAAA CAAGGTCGACGTCGTCGTCG GCT CGTCGACCACGCCGAGTTCG CTGGCCATGATGGAT TERM 4019 4393033 - 4392997 - g 71 -7.1 -4.22883 | opp_overlap 4392998, overlap 4392994 4392998 GATCAGCGAAAACAA GGTCGACGTCGTCGTCG GCT CGTCGACCACGCCGAGT TCGCTGGCCATGATG Daro_4097 4392752 - 4393891 + | extracellular ligand-binding receptor TERM 4020 4393900 - 4393953 + F 100 -19.8 -3.17075 | gap 3, opp_overlap 4393893 GAAATAACCGGGCTG GCGACCG-C-GGCGTTACCCCTCGCAG TAC CTGCGACGG-TAGCGCCAGGCGGTCGC TTCGCTTGACCCACC TERM 4021 4393991 - 4394005 + F 100 -11.4 -5.38398 | TCGAATGGCTATCCA GCGCGT ATA ACGCGC TTTTTCTCTTTTTAT TERM 4022 4394105 - 4394118 + G 70 -3.7 -4.62069 | TGCCTTGCTCGCCCT CGCGC TGGT GCTCG TTTTTGCCGTCACCC Daro_4098 4394031 - 4396883 + | inner-membrane translocator:ABC transporter related TERM 4023 4397568 - 4397547 - g 79 -13 -3.53811 | opp_overlap 4397536 GTTACGTGCTGGAAA CCGGCGAG ATTTCA CTCGCCGG GCCGAGCGCCGAACT Daro_4099 4396883 - 4397638 + | ABC transporter related TERM 4024 4397652 - 4397688 + T 100 -18.8 -3.78934 | gap 1, opp_overlap 4397650 4397635 4397633 AGCGCGAACTCAACG CGGCCCGCGCTCGTCGT CATG ACGGCGA-CGCGGGTCG TTGTTCTGCCCGCCG Daro_4100 4399868 - 4397646 - | hypothetical protein TERM 4025 4397778 - 4397818 + g 77 -11.8 -3.57263 | overlap 4397779 AGGCATCGGCTGCGG CGCTGGCGCCCGG-ACCTCC GGA GGTGGTGCCGGGCG-CGGCA TTTCCGGCTGACGCT TERM 4026 4397779 - 4397817 + g 77 -15.3 -2.74144 | overlap 4397778 GGCATCGGCTGCGGC GCTGGCGCCCGG-ACCTCC GGA GGTGGTGCCGGGCG-CGGC ATTTCCGGCTGACGC TERM 4027 4398302 - 4398336 + g 78 -4.9 -4.78029 | opp_overlap 4398289 CACGCGGCATCGACT CCGGGGCTGGC GCTGCCTCGATTG GCCGGCCACGG TTTTCATTTTCTTGA Daro_4101 4401717 - 4399999 - | response regulator receiver:tetratricopeptide TPR_4 TERM 4028 4400055 - 4400075 + g 76 -13.3 -3.08015 | opp_overlap 4400047 4400049 TAACATAGAGCTCGC GTGCCGAGG CCA CCTTGGCAC TCTTGCGATCCTTGC Daro_4102 4401819 - 4402601 + | hypothetical protein Daro_4103 4402711 - 4404597 + | tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA gidB 4404594 - 4405211 + | glucose-inhibited division protein B TERM 4029 4405834 - 4405822 - g 71 -7.7 -4.08216 | overlap 4405807 4405831 CCACTTCGGCGAAAA GGTCT ACA AGACC ATCGTGCCGCGCAAT Daro_4105 4405208 - 4405969 + | chromosome segregation ATPase TERM 4030 4406781 - 4406746 - g 70 -4.6 -4.51994 | overlap 4406748 4406762 CGAACGAACAAGAAA GGGGCCGGCAAAGTCA CCAT TGAGTTCGGCAGCCTC GACCAACTCGACGGC Daro_4106 4405966 - 4406820 + | chromosome segregation DNA-binding protein Daro_4107 4406940 - 4407296 + | ATP synthase protein I TERM 4031 4407560 - 4407539 - g 70 -10.1 -3.54638 | AGAACTTCGTCGAAA TGGTCGTCG GCCT CGTCGACCA GCAGGTTCGCGACAC Daro_4108 4407310 - 4408110 + | F0F1 ATP synthase subunit A Daro_4109 4408178 - 4408438 + | ATP synthase F0, C subunit Daro_4110 4408477 - 4408947 + | ATP synthase F0, subunit B Daro_4111 4408952 - 4409488 + | H+-transporting two-sector ATPase, delta (OSCP) subunit Daro_4112 4409498 - 4411036 + | ATP synthase F1, alpha subunit TERM 4032 4411157 - 4411145 - g 79 -9.1 -4.18018 | TGGCCGCATCCAAAA TGCGC AAG GCGCA GGACCGGATGCGGGC TERM 4033 4411403 - 4411387 - g 71 -6.5 -4.1822 | overlap 4411388 TCCCAGGGCAAGAAA CTGCAGG CTA CCTGCAT CGGCAACAAGGGCTT Daro_4113 4411051 - 4411911 + | F0F1 ATP synthase subunit gamma Daro_4114 4411943 - 4413343 + | F0F1 ATP synthase subunit beta TERM 4034 4413541 - 4413511 - g 78 -14.1 -3.15544 | gap 1, opp_overlap 4413501 GCTGACTCGTATCAA GCCGGGCACCATTC GTTT GAA-GGTGCCCGAC CAGAGCGAGTTTGAG atpC 4413371 - 4413796 + | F0F1 ATP synthase subunit epsilon TERM 4035 4413816 - 4413845 + T 81 -12.3 -3.19653 | opp_overlap 4413823, overlap 4413823 GAAAAGTACCCCGGA CAAAAAAGGCAGC CTAG GCTGCCTTTTTTA TTGCTCCAATTGTCC TERM 4036 4413838 - 4413823 - T 100 -10.4 -5.24531 | opp_overlap 4413823 4413816 ACCCCGGACAAAAAA GGCAGC CTAG GCTGCC TTTTTTATTGCTCCA TERM 4037 4413823 - 4413838 + T 100 -10.4 -5.5112 | opp_overlap 4413823, overlap 4413816 ACCCCGGACAAAAAA GGCAGC CTAG GCTGCC TTTTTTATTGCTCCA Daro_4116 4414444 - 4413875 - | hypothetical protein Daro_4117 4415194 - 4414457 - | 2-octaprenyl-6-methoxy-1,4-benzoquinone methylase / demethylmenaquinone methyltransferase Daro_4118 4415621 - 4415199 - | hypothetical protein Daro_4119 4417293 - 4415686 - | hypothetical protein TERM 4038 4416028 - 4416017 - G 73 -4.4 -4.70583 | TGGACCAACAGAAAA CGAT CGCC ATCG TGCGGGCAAATCACC TERM 4039 4417151 - 4417137 - G 89 -11.4 -4.28361 | GCAAGGCCAGCAAAA CGCCTG GAT CAGGCG GGGCCAGGAGCAATC Daro_4120 4417738 - 4417307 - | histidine triad (HIT) protein Daro_4121 4421724 - 4417849 - | hypothetical protein TERM 4040 4420267 - 4420279 + g 71 -6.2 -4.30576 | GACTTCAGACGCGGC GGCC ATCAC GGCC TTTTCGTCATGGCCG Daro_4122 4422239 - 4421814 - | putative inner membrane protein TERM 4041 4422197 - 4422184 - G 76 -6.7 -4.54047 | GTAGCCGAGAGAAAA CTGCT CACC AGCAG GCCCCAAAGCCCACT TERM 4042 4422717 - 4422687 - g 80 -3.2 -5.09426 | overlap 4422688 TCGAACTGGAAAAAA CCGAAAAGCTGACC TTC GTTCATCCCTTCGA CGATCCGGAGGTGAT TERM 4043 4422917 - 4422876 - g 74 -10.9 -3.53012 | gap 1 GCCTGCGTCCGGAAA TCAAGGTGATCGGTGTCGAA ACC TTCGACGCCGA-CGCCATGA AGCAGTCGCTGGCCG Daro_4123 4422278 - 4423810 + | threonine dehydratase TERM 4044 4423824 - 4423859 + T 77 -9.8 -3.6692 | gap 1, overlap 4423822 AAAAACCGCGTTCCG GATTGGCAGACGGCGTC AAA GAA-CCATCTGCCAATC TATTTTGGCCTGCCG TERM 4045 4423917 - 4423893 - T 72 -10.1 -3.3579 | opp_overlap 4423898, overlap 4423898 AAATGCGGCCAAATA TCAAATCCTGG CGA CCAGGATTTCA GCCCACCCAGCCCTG TERM 4046 4423898 - 4423912 + T 74 -10 -3.53012 | opp_overlap 4423893 4423898 CGGCCAAATATCAAA TCCTGG CGA CCAGGA TTTCAGCCCACCCAG TERM 4047 4423912 - 4423898 - T 83 -10 -4.00532 | opp_overlap 4423898, overlap 4423893 CGGCCAAATATCAAA TCCTGG CGA CCAGGA TTTCAGCCCACCCAG Daro_4124 4424241 - 4423915 - | hypothetical protein Daro_4125 4424939 - 4424238 - | AzlC-like TERM 4048 4424457 - 4424437 - G 74 -3.2 -4.74504 | AGCGCAATCGAAAAA TCCAGCGA CCAGC TTGCCGGA ATCGCCGTCCCAAGC TERM 4049 4424561 - 4424538 - G 81 -5.9 -4.82901 | overlap 4424541 GGTGCCGCACAAAAA CCAGTGGCG ATGCGG CGCTACCGG TCCGTCACGCAAGCG TERM 4050 4425144 - 4425101 - H 76 -12.6 -2.62267 | opp_overlap 4425101, overlap 4425100 4425098 4425132 CCTATAAATTAATAT TTCGTTGGGTAATTATTGCG CAGG CACTACACTTACCCAACGAA TATCGTATTTATTGG TERM 4051 4425164 - 4425132 - H 73 -11.5 -2.80816 | opp_overlap 4425101, overlap 4425101 4425100 4425098 TGCGCAGGCACTACA CTTACCCAACGAATA TCG TATTTATTGGGTAAG TCATGAAACCCGCGG Daro_4126 4425167 - 4426174 + | hypothetical protein Daro_4127 4426469 - 4427284 + | EAL Daro_4128 4427281 - 4428213 + | cysteine synthase Daro_4129 4428210 - 4429340 + | aminotransferase, class I and II Daro_4130 4429337 - 4429624 + | hypothetical protein Daro_4131 4430186 - 4429608 - | 5-formyltetrahydrofolate cyclo-ligase TERM 4052 4431400 - 4431377 - g 81 -5.2 -4.87626 | gap 1, overlap 4431379 GCCGAAGAGCAAAAA GCCGCCCAGGA TAA TCC-GGGCATC CGCCGCGCCCTGGCC Daro_4132 4430201 - 4432129 + | lytic transglycosylase, catalytic TERM 4053 4432303 - 4432313 + G 72 -2.4 -4.82901 | opp_overlap 4432303 ATGGTATCGACCACA CGGC GCG GCAG TTTTTCTGAGGAAGC Daro_4133 4432138 - 4434201 + | hypothetical protein TERM 4054 4434635 - 4434604 - g 73 -5 -4.59853 | gap 1, overlap 4434607 4434609 CGAACTGCCGAAAAA GATCATCGC-CGCCT GCA AGGCGAGCGGCGTCC GTCGCCTCGTGCACA Daro_4134 4434299 - 4435261 + | NAD-dependent epimerase/dehydratase:3-beta hydroxysteroid dehydrogenase/isomerase:dTDP-4-dehydrorhamnose reductase:NmrA-like TERM 4055 4435355 - 4435412 + G 71 -5.3 -4.32233 | opp_overlap 4435376, overlap 4435404 ACTGCGACTACGTAG TCGTCGGCGCCACCCCGGAAACCATGC TGGC GCAAGGTTTCCGGCCGGTCGGCAAGGA TTTTCCGGTTTTTCT TERM 4056 4436265 - 4436249 - g 84 -5.7 -5.00616 | opp_overlap 4436263, overlap 4436251 CCCTGTTTGAAAAAA CCGATGC GCT GCGCCGG CCGGAACGCTTCCGG Daro_4135 4435279 - 4436517 + | metal dependent phosphohydrolase Daro_4136 4436709 - 4436482 - | hypothetical protein TERM 4057 4437511 - 4437493 - g 80 -11.7 -3.72073 | overlap 4437489 ACCCACGAAAAGGAA TGGCCGC TCGTG GCGGCCA CCTTGCGGGACTGGT Daro_4137 4436740 - 4437546 + | Alpha/beta hydrolase fold Daro_4138 4437727 - 4437536 - | hypothetical protein TERM 4058 4438067 - 4438055 - g 74 -5.5 -4.56775 | ACCTCGCCCGAAAAA CAGCT TCA AGCCG TAGAAAACTTCGATG Daro_4139 4437791 - 4438762 + | hypothetical protein Daro_4140 4439926 - 4438766 - | hypothetical protein Daro_4141 4440073 - 4441170 + | hypothetical protein TERM 4059 4441451 - 4441427 - g 74 -3.4 -4.8622 | gap 1, overlap 4441428 4441429 GCCGCCAACGAAAAA CTCCGCCAGTC CCTT GCCGGGCGG-G ATAACGCACTGCGCT TERM 4060 4442145 - 4442171 + G 70 -4.5 -4.56597 | gap 1, opp_overlap 4442140, overlap 4442146 CAGCAGAAGACGCTC G-TCAGCATGCA GAAA TGGATGCTGATC TTTTTGCCGCCAAGG Daro_4142 4441175 - 4443925 + | PAS/PAC sensor hybrid histidine kinase Daro_4143 4444030 - 4444893 + | PP-loop Daro_4144 4444971 - 4445870 + | forkhead-associated TERM 4061 4445899 - 4445878 - T 100 -12.3 -4.55128 | overlap 4445879 ACCTGTAAACGAAAA CCGGCCATC CGCA GATGGCCGA TATAACGAATTCCTA TERM 4062 4445898 - 4445879 - T 95 -13.6 -3.32354 | overlap 4445878 CCTGTAAACGAAAAC CGGCCATC CGCA GATGGCCG ATATAACGAATTCCT Daro_4145 4446174 - 4445920 - | hypothetical protein TERM 4063 4445956 - 4445986 + g 71 -5.5 -4.41895 | gap 2, opp_overlap 4445959, overlap 4445947 4445967 CGTGCACTTCTTCAT GAAGCTGTTCTTGGC AGC GCCA-GC-CAGCTTC TTTTCCTTGGCGGTT Daro_4146 4447158 - 4446223 - | HPr kinase/phosphorylase Daro_4147 4447614 - 4447168 - | PTS IIA-like nitrogen-regulatory protein PtsN TERM 4064 4447660 - 4447631 - R 100 -13.5 -4.20918 | opp_overlap 4447638 4447651, overlap 4447635 GGGAAGGGTAATAAA GCAAGGCCGCAGC CATG GCTGCGGCCTGTC GGCGCTTATTCAGCA TERM 4065 4447656 - 4447635 - R 100 -17.3 -3.6914 | opp_overlap 4447638 4447651, overlap 4447631 AGGGTAATAAAGCAA GGCCGCAGC CATG GCTGCGGCC TGTCGGCGCTTATTC Daro_4148 4447992 - 4447666 - | SSU ribosomal protein S30P / sigma 54 modulation protein TERM 4066 4447888 - 4447875 - G 71 -5.9 -4.42386 | TTTCGACGGACAAAA CGACG CTAA CGCCG GTTACCTTGTCGAAA Daro_4149 4449477 - 4448008 - | RNA polymerase factor sigma-54 Daro_4150 4450239 - 4449505 - | ABC transporter related Daro_4151 4450793 - 4450236 - | regulatory protein RecX TERM 4067 4450404 - 4450433 + g 89 -9.9 -4.57073 | overlap 4450384 GCCGGCTTCCGGCAA GGCGGTGGCGATG TCAT CATCACCGACGCC TTTTTGCCGAAGCTC TERM 4068 4450666 - 4450687 + g 74 -12.9 -3.15663 | ACGCGCAACTGCGTC GCGCCGGAC TGCA GCCCGGCGC TTCCTCGCCCTGACT recA 4451817 - 4450786 - | recombinase A Daro_4153 4451999 - 4452190 + | hypothetical protein Daro_4154 4452193 - 4452849 + | ribosomal large subunit pseudouridine synthase A Daro_4155 4452921 - 4454468 + | Na+/solute symporter Daro_4156 4454607 - 4455662 + | VanZ like protein TERM 4069 4455806 - 4455787 - gf 70 -6.3 -4.21194 | opp_overlap 4455796 TCTGATGACCGAAAA GCCGGGC AAGCCA GCCTGGC GGCGTTTTTTCGAAC Daro_4157 4455614 - 4458310 + | ATPase, E1-E2 type TERM 4070 4458634 - 4458602 - g 71 -9.7 -3.71848 | opp_overlap 4458579 TGTCCGTATCAACAA GGCCGGCTGTCTCGG CCG CTGTGACAACGGGCC GGTCATGGTCGTGTA Daro_4158 4458444 - 4458752 + | Fe2-S2-type ferredoxin Daro_4159 4458756 - 4459394 + | hypothetical protein Daro_4160 4459382 - 4460326 + | ABC transporter related Daro_4161 4461100 - 4460333 - | HAD family hydrolase Daro_4162 4461896 - 4461210 - | 2-phosphosulfolactate phosphatase Daro_4163 4463482 - 4461908 - | radical SAM family protein TERM 4071 4463639 - 4463619 - H 72 -11.1 -3.00946 | overlap 4463616 CTCGGCTATAAATTA CCAGCATCC TCA GGAAGCTGG CACAAAACGCAGCTC TERM 4072 4464528 - 4464515 - g 70 -3.8 -4.59773 | TGCGAGTGGGAAAAA CTGG GCCCGG CCAG CCTGAGCTGCCTCGA Daro_4164 4463708 - 4464607 + | hypothetical protein Daro_4165 4464688 - 4465458 + | ABC-2 type transporter, NodJ TERM 4073 4465541 - 4465511 - g 75 -7.6 -4.24342 | gap 1, overlap 4465512 GCCCCGATGAAGAAA CCG-CCAACGCCA TCGCCT TGGCGCTGGTCGA GGCGAAGCTGGCTGC Daro_4166 4465468 - 4465785 + | CutA1 divalent ion tolerance protein TERM 4074 4467248 - 4467228 - g 78 -2.3 -5.08601 | overlap 4467233 GTACTGGAAGAAAAA CTGAAGGCC GCC GGCCAACCG GTCATGCTCGATTTC Daro_4167 4465782 - 4467542 + | cytochrome c biogenesis protein, transmembrane region Daro_4168 4468252 - 4467539 - | phosphoesterase, PA-phosphatase related Daro_4169 4468355 - 4468594 + | phosphopantetheine-binding Daro_4170 4468598 - 4469848 + | 3-oxoacyl-[acyl-carrier-protein] synthase II Daro_4171 4469867 - 4470151 + | acyl carrier protein TERM 4075 4470208 - 4470224 + G 70 -10.1 -3.53444 | GTCTTTCTCGTGCTG TGGGCCG TGC TGGCCCA TTTCGGCAGCGCTGG Daro_4172 4470148 - 4470813 + | transmembrane protein Daro_4173 4470810 - 4472186 + | AMP-dependent synthetase and ligase TERM 4076 4472173 - 4472186 + F 72 -6.7 -4.20084 | opp_overlap 4472172, overlap 4472172 TGTATGCCGAAAAGG TCAGC CATG GCTGA TTTTCACTGGATCGT Daro_4174 4472179 - 4472478 + | hypothetical protein TERM 4077 4473226 - 4473241 + G 74 -5.4 -4.56597 | gap 1 GCTACCAGCTGCACT TCGAGCC TCT GGC-CGA TTTTTCGCAGACCCC Daro_4175 4472475 - 4473380 + | putative lauroyl/myristoyl acyltransferase involved in LPS biosynthesis TERM 4078 4473602 - 4473587 - g 70 -4.6 -4.57073 | overlap 4473588 GACCGTCTGGAAAAA CGGACG CTGA CGCCCA AAGTCGAAACCCTGC Daro_4176 4473377 - 4473946 + | hypothetical protein TERM 4079 4474221 - 4474198 - g 73 -4.6 -4.62069 | gap 1 GGTCGACTGCAAAAA CTGC-CCGA TTTCGCC TCGGTGCAG AACGGCGAGACCGCC TERM 4080 4475826 - 4475814 - g 74 -3.3 -4.81551 | CATCGACATGAAAAA CGAGT TCG ACACG CTGTACAACGACTAC Daro_4177 4473943 - 4476294 + | transmembrane protein Daro_4178 4476291 - 4476926 + | hypothetical protein Daro_4179 4476929 - 4477729 + | polysaccharide deacetylase Daro_4180 4477726 - 4478448 + | hypothetical protein TERM 4081 4479332 - 4479319 - g 79 -9.5 -4.25104 | GCTGCGCTACGAAAA CGGCC AGCC GGCCG CTGTCCCGAGTAGCG TERM 4082 4479444 - 4479429 - g 75 -2.4 -5.00616 | overlap 4479431 TGCTGCTGGAAAAAA CCGCCG CCTT CAGCCG TAGCCCGTTGTTCAA TERM 4083 4479505 - 4479484 - g 76 -9.4 -4.09739 | CGAACTTGCCGAAAA GCAGGGCA AACCCA TGCCCCGC CAGGCCATCCCCCAG Daro_4181 4478453 - 4479625 + | hypothetical protein Daro_4182 4480966 - 4479641 - | anaerobic C4-dicarboxylate transporter TERM 4084 4480541 - 4480502 - G 82 -11.4 -3.87815 | gap 1 CGTCATGGCCAGAAA GGTCGTCACGGCC-GCC GCCACCG GGCTGGCCGTGATGCCC ATCTGCGACGCCACG TERM 4085 4480662 - 4480636 - G 79 -8.7 -4.21974 | gap 1, overlap 4480618 GCAGCAGCGAATAAA CGGCGTG-GCCG GTGC CGACGCACACCG TCAGCAAGAACGTGG TERM 4086 4480994 - 4481008 + r 77 -8.6 -4.08394 | AAGCAAACGCTTATA TGTTGC AGC GCAACA TTTTCAAGCCACTAT Daro_4183 4482068 - 4481211 - | hydratase/decarboxylase Daro_4184 4483287 - 4482154 - | extracellular ligand-binding receptor TERM 4087 4483611 - 4483593 - g 81 -5.8 -4.77036 | overlap 4483595 GTCGACGACGAAAAA CTGCCGGC AGC GCTGGCCG ATTACGATTGCCGCA Daro_4185 4483398 - 4484612 + | 3-oxoacyl-(acyl carrier protein) synthase I TERM 4088 4484830 - 4484863 + G 76 -8.7 -4.11216 | CGAAGCCGCTGCCCA CGCCGGGGCCGATGT CGCC ACGCTGGCCACGGTG TTTTCCGCCTCGGGC Daro_4186 4484609 - 4485412 + | hypothetical protein Daro_4187 4485430 - 4485879 + | hypothetical protein fabG 4485876 - 4486595 + | 3-ketoacyl-(acyl-carrier-protein) reductase Daro_4189 4486637 - 4486885 + | hypothetical protein Daro_4190 4487216 - 4486887 - | putative thioredoxin TERM 4089 4486937 - 4486957 + g 71 -9.7 -3.73953 | opp_overlap 4486949 4486951, overlap 4486951 TTTCCTTGTCGCCGG TCGGCCG AACGAGA CGGCCGA TTTCCTGGCCGTCCT Daro_4191 4488426 - 4487227 - | Sodium/hydrogen exchanger Daro_4192 4489595 - 4488423 - | CBS:HPP Daro_4193 4490365 - 4489607 - | glycosyl transferase family protein Daro_4194 4491160 - 4490378 - | phospholipid/glycerol acyltransferase Daro_4195 4492001 - 4491153 - | putative outer membrane protein Daro_4196 4493005 - 4492001 - | endoribonuclease L-PSP Daro_4197 4494339 - 4493005 - | monooxygenase, FAD-binding:FAD dependent oxidoreductase:tryptophan halogenase Daro_4198 4495022 - 4494384 - | hypothetical protein TERM 4090 4495074 - 4495053 - R 74 -8.7 -3.90112 | gap 1, overlap 4495055 4495067 TTGCCCGCAACGAAA GACCGGCGAT TAT ACCGCCGG-C TGGGGTGCTGGCGGC TERM 4091 4495073 - 4495055 - R 86 -12.4 -3.54146 | overlap 4495053 4495067 GCCCGCAACGAAAGA CCGGCGAT TAT ACCGCCGG CTGGGGTGCTGGCGG Daro_4199 4496708 - 4495062 - | cobalamin B12-binding:radical SAM family protein TERM 4092 4496101 - 4496112 + g 71 -7.2 -4.25104 | opp_overlap 4496109 4496110 GACGTGATCATCGTT GCGC CAAA GCGC TTTTCATAAGCGAAC TERM 4093 4496212 - 4496238 + g 74 -7.3 -4.4078 | gap 1, opp_overlap 4496207 4496206 4496204 4496231, overlap 4496213 TCAAGAATACGATCA CGGCGCGGATTG ACCA CAATCCG-GCCA TTTTCATTGCGCCAG TERM 4094 4496764 - 4496750 - R 76 -3.5 -4.91511 | ATTCTATTAGAAAAA CCCGA CCCGC TCAGG TTCCGGAAAAAGTAT TERM 4095 4497117 - 4497107 - R 71 -2.6 -4.93365 | overlap 4497115 GTGGATAAGTAAAAA TAAA CAA TTTA AATCATTGAGTTAAG trmE 4498617 - 4497271 - | tRNA modification GTPase TrmE TERM 4096 4498546 - 4498528 - G 100 -14.6 -4.20806 | CAGCGCAAAAGCAAA GGGCAGCA AAT TGCTGCCC GAGATGCGGATCACG Daro_4201 4500264 - 4498621 - | protein translocase subunit yidC TERM 4097 4500174 - 4500116 - G 70 -10.8 -3.53012 | opp_overlap 4500171, overlap 4500117 GCCTTGGCCTGCAAA GCGGCAGACGGCGTTGGTGCAGCACCAG AGA CAGGCGCTGCAGCGACAGCATCTGCAGG CTTCGGCTGGTTGTA TERM 4098 4500173 - 4500117 - G 77 -14.3 -2.71712 | opp_overlap 4500171, overlap 4500116 CCTTGGCCTGCAAAG CGGCAGACGGCGTTGGTGCAGCACCAG AGA CAGGCGCTGCAGCGACAGCATCTGCAG GCTTCGGCTGGTTGT Daro_4202 4500499 - 4500290 - | hypothetical protein Daro_4203 4500867 - 4500496 - | ribonuclease P protein TERM 4099 4500834 - 4500803 - G 86 -13.2 -3.53091 | opp_overlap 4500810 4500829, overlap 4500804 4500810 ATTGCCTTTCTGAAA CCAAAAACGGATGA GAAC TCATCCGTTTTTGT CAGGCGATAGCGTCG TERM 4100 4500833 - 4500804 - G 84 -16.7 -2.71712 | opp_overlap 4500810 4500829, overlap 4500803 4500810 TTGCCTTTCTGAAAC CAAAAACGGATGA GAAC TCATCCGTTTTTG TCAGGCGATAGCGTC TERM 4101 4500810 - 4500827 + g 100 -9.9 -4.83169 | opp_overlap 4500804 4500803 4500810 TTCTGAAACCAAAAA CGGATGA GAAC TCATCCG TTTTTGTCAGGCGAT TERM 4102 4500827 - 4500810 - G 100 -9.9 -4.98531 | opp_overlap 4500810, overlap 4500804 4500803 TTCTGAAACCAAAAA CGGATGA GAAC TCATCCG TTTTTGTCAGGCGAT rpmH 4501019 - 4500885 - | 50S ribosomal protein L34