TransTermHP v2.07 (built on Jan 21 2009) 25 bins; sample size is 20000000 --pval-conf=/fs/szasmg2/carlk/TTupdate2/expterm.dat --gc=-2.3 --au=-0.9 --gu=1.3 --mm=3.5 --gap=6 --max-len=59 --min-stem=4 --max-loop=13 --min-loop=3 --uwin-length=6 --uwin-require=3 --max-hp-score=-2 --max-tail-score=-2.5 --loop-penalty=1,2,3,4,5,6,7,8,9,10,11 --start-cut=0 --end-cut=25 Genes: 0.610496 %AT, 1356390 nt, 8185 terms. Intergenic: 0.670939 %AT, H2T: 140015 nt, 949 terms; T2T: 50112 nt, 967 terms; H2H: 40604 nt, 577 terms. Each terminator entry starts in column 3 and is of the form: term # start - end +/- regionconf hp tail | notes Followed by the sequence of the 5' tail, 5' stem, loop, 3' stem, and 3' tail. Genes are interspersed, and start the first column. SEQUENCE gi|109946640|ref|NC_008229.1| Helicobacter acinonychis str. Sheeba, complete genome (length 1553927) TERM 1 410 - 398 - g 83 -5.5 -5.4477 | AAATCGCTAAAAAAA TCGCC CAA AGCGA CACTCCCCCTTATAA dnaA 1 - 1350 + | chromosomal replication initiation protein Hac_0002 1575 - 3011 + | hypothetical protein exoA 3162 - 3914 + | exodeoxyribonuclease Hac_0004 4546 - 3911 - | hypothetical protein Hac_0005 4903 - 4550 - | hypothetical protein TERM 2 5318 - 5328 + G 73 -6.8 -4.2679 | opp_overlap 5318 ATTTATGGTAAATTA GAGC AAA GCTC TTTTAATCAAGCTTA TERM 3 5473 - 5444 - g 72 -5.3 -4.66264 | gap 1, overlap 5445 GAAAATTTGCAAAAA CTCATTTCTTTAGA AAA TCTAAA-AAATGAA GGTATTAAAGAAAAT TERM 4 5572 - 5603 + G 75 -2.4 -5.36441 | AACTTTCCCTTCACA GCATTTAAATGCAT TAAA ATATATTGAAATGC TTTTTTATATGAAAA TERM 5 6321 - 6303 - g 80 -7.5 -4.431 | TAGTTATGGAGAAAA TTAGCGA AGAAA TCGCTAA AAACCATCAAGTCAT recG 5021 - 6886 + | ATP-dependent DNA helicase mod 6937 - 8328 + | - COG2189L type III restriction-modification system methylation subunit fragment 1 TERM 6 8416 - 8396 - g 73 -4.1 -5.08601 | opp_overlap 8396 TGATCCCAAGAAAAA CAAAAGT GCGCATG ACTTTTG TTTAAACACCCTAAA TERM 7 8826 - 8809 - g 73 -2.7 -5.25803 | opp_overlap 8812, overlap 8812 AAGGGGTAGAAAAAA TTAGCAT GTAT ATGCTTA ATATCAGTAACGATA mod 8325 - 8915 + | - COG2189L type III restriction-modification system methylation subunit fragment 2 TERM 8 9465 - 9447 - g 83 -9 -4.28713 | opp_overlap 9446 9447, overlap 9463 AACATTATCAATAAA TCATGTTT AGA AAACATGA ATTTATTCAATGGTG TERM 9 9447 - 9465 + G 70 -9 -3.12702 | opp_overlap 9447 9463, overlap 9446 AACATTATCAATAAA TCATGTTT AGA AAACATGA ATTTATTCAATGGTG TERM 10 10111 - 10125 + G 73 -4.2 -4.86731 | opp_overlap 10111, overlap 10112 GTGAAAATGAAAAGC CGGCTA AAT TAGCCC TTTTATTTGAAAAAC res 8916 - 11840 + | type III restriction enzyme TERM 11 12347 - 12361 + G 70 -2.8 -5.06052 | opp_overlap 12347, overlap 12355 AGTTGCTCAGTAAAG CCTTTT GTC AAATGG TTTTGTATTTTTTAG TERM 12 12911 - 12925 + G 84 -8.6 -4.46493 | GCATTTTATTTTTAC GGCTTT TAG AAAGCC TTTTAATCTCTTTCA TERM 13 13080 - 13065 - g 70 -4.8 -4.56436 | GATTAAAGAAAACAA GATTTT AGAA AAAATC CCTTATTTGAACTCC ECO57IR 12025 - 13122 + | - COG1002V putative type II DNA modification enzyme (methyltransferase) fragment 1 TERM 14 15069 - 15054 - g 89 -7.6 -5.12707 | CGAAATCTTAAAAAA TTGCGA TGAT TCGCAA AAAGATGGCATGGGA TERM 15 15386 - 15402 + G 71 -3.7 -4.9138 | TTGTGTATGGCGAGA TCGTG CAAGAGC CACGA TTTTATTTAGATAAT ECO57IR 13240 - 15798 + | - COG1002V putative type II DNA modification enzyme (methyltransferase) fragment 2 TERM 16 15857 - 15837 - T 85 -8.3 -4.55798 | opp_overlap 15843 15847 15851 GACCCTAAAGGAAAA CCCCTACTT TTT AAGCAGAGG AAACCTTTGGCTTAA TERM 17 15843 - 15876 + T 72 -2.5 -5.41143 | gap 1, opp_overlap 15837, overlap 15847 15851 AAAGGAAAACCCCTA CTTTTTAAG-CAGAGG AAA CCTTTGGCTTAATGGG TTTTTTTAACCACTG trpA 17321 - 16548 - | tryptophan synthase subunit alpha trpB 18514 - 17333 - | tryptophan synthase subunit beta trpC 19874 - 18516 - | bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase trpD 20874 - 19867 - | anthranilate phosphoribosyltransferase TERM 18 20762 - 20780 + g 80 -10.2 -3.58329 | opp_overlap 20762 20761 20760 AAAGCACACAAAATC GCCCCAAG TTG CGTGGGGC TTACTTCTTCGTTAA TERM 19 20780 - 20762 - G 74 -10.2 -2.6155 | opp_overlap 20762, overlap 20761 20760 AAAGCACACAAAATC GCCCCAAG TTG CGTGGGGC TTACTTCTTCGTTAA trpG 21458 - 20871 - | anthranilate synthase component II trpE 22957 - 21455 - | anthranilate synthase component I TERM 20 22293 - 22309 + g 83 -6.5 -5.03314 | opp_overlap 22292 CAACTAACACTAACT TCTGTGC TTT GCTCAGA TTTTTTAGGGATAAA TERM 21 22632 - 22609 - G 74 -6 -4.58283 | overlap 22629 TAACGCTTTTAAAAA GCCCCCTTAA AGCG TCAAAAGGGC TAGGCTCAAAGAGTT TERM 22 23080 - 23049 - R 74 -3.2 -5.3798 | CAATAACAAGAAAAA TTTGTATCCA ACTTTATGGGAA TGGATACAAA AATCCGGTTCAATGA fragment 23901 - 23101 - | COG2194R hypothetical protein fragment 24772 - 23963 - | COG2194R hypothetical protein TERM 23 24811 - 24793 - R 73 -7.6 -3.65812 | opp_overlap 24792 24793, overlap 24802 TGTCCTTTAAGAGAA TTTGAAAA CTT TTTTCAAA ATATTTTTTATTCTA rfaJ 25887 - 24784 - | lipopolysaccharide biosynthesis protein miaA 26691 - 25891 - | tRNA delta(2)-isopentenylpyrophosphate transferase TERM 24 26247 - 26257 + g 71 -4.6 -4.77925 | overlap 26248 ATAGCGTTATGGCAT GCTC AAA GGGC TTTTTGGGATTTTTT Hac_0023 27133 - 26792 - | hypothetical protein Hac_0024 27193 - 27639 + | 7-cyano-7-deazaguanine reductase TERM 25 28565 - 28554 - T 70 -4.4 -4.78149 | GTTACAAGCCAAAAA GCTT AAAA AAGC TAAAAGCTCATAACT TERM 26 29190 - 29208 + T 72 -8.9 -2.76696 | overlap 29189 CCATAGAAAGTGATA GCCTTGT ATGCG ACAAGGC GTTCTTAGGCAGCAG TERM 27 29356 - 29344 - T 70 -6.2 -4.2354 | GAAAGGTGAAAAGAA CCGC AGTGA GCGG AGTGAAATAGAACCT TERM 28 31913 - 31961 + T 100 -14.9 -3.47349 | opp_overlap 31914 31918, overlap 31914 31919 ACAGCTCCCTAATAA AGAAAGGGGAGTTAAGGGTAAAT GCG GTTTATCTTTAACTCCCTTTTCC TTGTGCCTTTAGAGA TERM 29 31914 - 31960 + T 100 -18.4 -2.68088 | opp_overlap 31914 31918, overlap 31913 31919 CAGCTCCCTAATAAA GAAAGGGGAGTTAAGGGTAAAT GCG GTTTATCTTTAACTCCCTTTTC CTTGTGCCTTTAGAG TERM 30 31960 - 31914 - T 100 -11.1 -4.1552 | opp_overlap 31914 31913 31919, overlap 31918 CAGCTCCCTAATAAA GAAAGGGGAGTTAAGGGTAAA TGCGG TTTATCTTTAACTCCCTTTTC CTTGTGCCTTTAGAG TERM 31 31956 - 31918 - T 76 -6.1 -4.67607 | opp_overlap 31914 31913 31919, overlap 31914 TCCCTAATAAAGAAA GGGGAGTTAAGGGTAAA TGCGG TTTATCTTTAACTCCCT TTTCCTTGTGCCTTT TERM 32 31919 - 31955 + T 100 -14.7 -4.50661 | opp_overlap 31918 31914, overlap 31914 31913 CCCTAATAAAGAAAG GGGAGTTAAGGGTAAAT GCG GTTTATCTTTAACTCCC TTTTCCTTGTGCCTT TERM 33 32550 - 32576 + T 70 -3.8 -5.04249 | opp_overlap 32550 TGCAACAAAATAAAA TTTAAAGCTATA AAA TACAGCTTAAAA TTTATTTTTTAAAAA TERM 34 32576 - 32550 - T 83 -6 -5.27476 | opp_overlap 32550 TGCAACAAAATAAAA TTTAAAGCTATA AAA TACAGCTTAAAA TTTATTTTTTAAAAA Hac_0029 33159 - 32725 - | hypothetical protein TERM 35 32793 - 32818 + g 70 -2.7 -5.0538 | gap 1, overlap 32796 TTTGCGTTATCGCTC CGTCTAAAATTT CAA AATTTTTAG-CG TTTTTTGGGGTAAGG llm 34772 - 33765 - | methicillin resistance protein TERM 36 34581 - 34564 - G 83 -4.1 -5.55855 | CCCAAAAAAACAAAA GATCCCT TAAA AGGCATC TCTAAAGGCTCAAAA TERM 37 34687 - 34703 + g 71 -3.7 -5.00616 | ATCTTGTTGGCGTTA TCCAC AAAGAGC GTGGA TTTTTTAGACCACAA pdxJ 34902 - 35690 + | pyridoxal phosphate biosynthetic protein PdxJ pdxA 35692 - 36624 + | 4-hydroxythreonine-4-phosphate dehydrogenase fragment 36694 - 37080 + | COG1106R hypothetical protein fragment 37047 - 37391 + | - hypothetical protein omp1 37750 - 37610 - | - - outer membrane protein 1 fragment 4 omp1 38277 - 37807 - | - - outer membrane protein 1 fragment 3 omp1 38546 - 38337 - | - - outer membrane proteine 1 fragment 2 omp1 39033 - 38662 - | - COG0840NT outer membrane protein 1 fragment 1 TERM 38 39293 - 39311 + r 100 -7.3 -5.32882 | opp_overlap 39292, overlap 39293 39295 GTGGATTGTTAAATT GTGGGGG TTAAC CCCCCCC TTTTTTGTGGTAGTG TERM 39 39293 - 39310 + r 77 -8.3 -3.78644 | opp_overlap 39292, overlap 39293 39295 GTGGATTGTTAAATT GTGGGGG TTAA CCCCCCC CTTTTTTGTGGTAGT TERM 40 39295 - 39309 + r 71 -8.5 -2.86102 | opp_overlap 39292, overlap 39293 39293 GGATTGTTAAATTGT GGGGG TTAAC CCCCC CCTTTTTTGTGGTAG gltA 40608 - 39328 - | type II citrate synthase TERM 41 39456 - 39435 - G 74 -5 -4.91109 | opp_overlap 39435, overlap 39414 TGCCGATGACAAAAA CCGGCGTG AAAAAA CGCACCGG AATTTTTAAAGCCCT TERM 42 40891 - 40873 - g 77 -6 -4.7871 | opp_overlap 40874 AATTACGATTAAAAA TGGCAAAT TGT ATGTGCCA AATTGCCCTATTATC TERM 43 41101 - 41073 - g 71 -8.2 -3.48466 | gap 1 ATCATAAGGAATTAA GCCCAG-AAGAGC AATG GCTCTTACCGGAC ACTATTGAAGCAATC icdA 40811 - 42088 + | isocitrate dehydrogenase Hac_0042 42133 - 42651 + | hypothetical protein TERM 44 42652 - 42662 + T 70 -4 -5.02074 | opp_overlap 42652 AGTAAAATCCATTAA GTTT TTT AAAC TTTTTTGAAAAATCA bioD 43284 - 42628 - | hypothetical protein Hac_0044 43392 - 43805 + | hypothetical protein Hac_0045 43807 - 44082 + | hypothetical protein TERM 45 45447 - 45413 - g 73 -3.7 -5.08011 | gap 1, overlap 45439 AAAATCGCTAAAAAA TAAGATTG-TCGCCCA AACA CAAGCGATCAATCTCA TCAGTAATGCGATTA clpA 44082 - 46301 + | ATP-dependent Clp protease, ATP-binding subunit ClpA panD 46303 - 46641 + | aspartate alpha-decarboxylase Hac_0048 46652 - 46945 + | hypothetical protein Hac_0049 46945 - 47940 + | hypothetical protein TERM 46 48397 - 48409 + G 89 -4.1 -5.76949 | TTGGCTTTTTTTAAG CGTTT TGC AAGCG TTTTTTTTGAGCGTG TERM 47 48561 - 48573 + G 83 -4.1 -5.66229 | AATGCCTAGCCCTTG GGTTT TAC AAGCC TTTTTTGTTATTGGT Hac_0050 47948 - 49012 + | hypothetical protein comB1 49172 - 49915 + | ComB1 protein comB2 49915 - 50865 + | ComB2 protein TERM 48 50863 - 50885 + G 70 -7 -3.79678 | opp_overlap 50863 50866, overlap 50866 AAGGGTAGAGATGAA TAAGTGGCTC AAG GGGGCACTTA TTGTTGTAGGGGGTT TERM 49 51383 - 51402 + G 71 -3.5 -5.14563 | opp_overlap 51383 TTACGCACCATTACA GCGGATA AAATGA TACCCGC TTTTTTGATCACGCC comB3 50858 - 51994 + | ComB3 protein algA 52044 - 53471 + | mannose-6-phosphate isomerase / mannose-1-phosphate guanylyltransferase gmd 53481 - 54626 + | hypothetical protein wbcJ 54619 - 55551 + | GDP-fucose synthetase, putative tyrA 56844 - 56017 - | prephenate dehydrogenase lon 59341 - 56846 - | ATP-dependent protease La TERM 50 56922 - 56940 + g 74 -7.5 -3.96337 | TCTAGCACTTCAGCA GGGATTT CATCT AAATCCC TTTCGTAATTTTTGA TERM 51 57186 - 57205 + g 100 -2.2 -6.01725 | gap 1 AAATGCAAATCGTAA GCGTTATAA ACC TTA-AGCGC TTTTTTCTTTTTCTT TERM 52 57331 - 57306 - G 70 -2.6 -5.04175 | TTAACGACAGAAAAA GCGATCAAAG CGGATT CTTTCATCAC ATCGCCTAAGCTTCC TERM 53 59420 - 59396 - R 70 -4.4 -4.90266 | gap 1, opp_overlap 59396 59406, overlap 59400 CCTACCAATCAAAAA TCAACACATAC CAAG GCATGTGT-GA TGGTTTGGGTTTAGT comL 60035 - 59382 - | competence lipoprotein TERM 54 59917 - 59900 - G 70 -4.9 -4.64657 | overlap 59915 CTAAATTGCCAAAAA GGATTTC TCTT AAAATCC CTTGATACCAAAAGA Hac_0061 60252 - 60641 + | flagellar assembly protein FliW fabZ 60812 - 61288 + | (3R)-hydroxymyristoyl-ACP dehydratase lpxA 61291 - 62103 + | UDP-N-acetylglucosamine acyltransferase clpX 62105 - 63415 + | ATP-dependent protease ATP-binding subunit mreB 63468 - 64511 + | rod shape-determining protein MreB mreC 64516 - 65262 + | rod shape-determining protein TERM 55 65312 - 65324 + G 85 -4.9 -5.50925 | GAGTTGTTTGATGAT TTTAG ATT CTAAA TTTTTTGTGTTCATT TERM 56 65626 - 65608 - g 72 -8.8 -3.36228 | opp_overlap 65608, overlap 65606 CGCATTATAAAGAGA GCTTGGAG TTT CTCCATGC TTATGTTTATCCGAA TERM 57 65608 - 65626 + G 79 -8.8 -3.89695 | opp_overlap 65608 65606 CGCATTATAAAGAGA GCTTGGAG TTT CTCCATGC TTATGTTTATCCGAA fragment 65307 - 66404 + | COG2194R putative metal-dependent hydrolase fragment 1 fragment 66385 - 66969 + | COG2194R putative metal-dependent hydrolase fragment 2 nusA 68383 - 67196 - | transcription elongation factor NusA selA 69627 - 68449 - | selenocysteine synthase TERM 58 69374 - 69385 + g 73 -4.4 -5.01732 | opp_overlap 69374 69373 TCAGTGTCAAAACAC GCTT TAAA AAGC TTTTTTAAGGGGGTT TERM 59 69836 - 69821 - R 80 -6.2 -4.87318 | opp_overlap 69821 TTCAAAATTCAAAAA GAAATC CTAA GATTTC TTTCAATTTAGAACT frpB 72435 - 69844 - | iron-regulated outer membrane protein Hac_0073 72914 - 72588 - | hypothetical protein folB 73251 - 72898 - | hypothetical protein Hac_0075 73910 - 73248 - | putative glycerol-3-phosphate acyltransferase PlsY Hac_0076 74014 - 75384 + | ferredoxin-like protein TERM 60 75405 - 75379 - T 77 -8.9 -3.20901 | gap 1, opp_overlap 75381 ATCGCACCAAGTGAA GATTGAGC-CTA AAAC TAGCGCTCAATC ACTTCATAAGGCAGA lys1 76592 - 75393 - | hypothetical protein TERM 61 75605 - 75628 + g 71 -4.6 -4.74767 | gap 1 AGCATTTCTTATGAT CGCAC-ACATT GTA AATGTAGAGCG TTTTGTCTTGGTTGT gltS 76679 - 77905 + | sodium/glutamate symport carrier protein TERM 62 78071 - 78043 - g 76 -3.9 -5.252 | GAGGTGCATAAAAAA GCCAAAACTCC GCATGCA GAAGTCTTAGC CACTAAATCGGCGTT TERM 63 78401 - 78381 - g 73 -6.8 -4.32669 | opp_overlap 78381, overlap 78378 AAGTTTAGAAAACAA GGCTAGAG ATTTG CTCTTGCC TTTTAGGATAATGGA TERM 64 78381 - 78401 + G 71 -6.8 -4.15565 | opp_overlap 78381 78378 AAGTTTAGAAAACAA GGCTAGAG ATTTG CTCTTGCC TTTTAGGATAATGGA TERM 65 78660 - 78673 + G 88 -6.7 -5.252 | opp_overlap 78660 CAAGCATCCAACTAA CTCTC ATTT GAGAG TTTTTTCTGCACCTA ribD 77902 - 78936 + | diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase TERM 66 79152 - 79126 - g 75 -6.6 -4.41797 | opp_overlap 79121 79126, overlap 79127 AAAAGGATAGCAAAA TGGCGTTTTGTT CTC AAAAAAACGCCC TTAAATTCCCTAACA TERM 67 79151 - 79127 - g 78 -10.1 -3.23452 | opp_overlap 79121 79126, overlap 79126 AAAGGATAGCAAAAT GGCGTTTTGTT CTC AAAAAAACGCC CTTAAATTCCCTAAC Hac_0080 78918 - 79634 + | hypothetical protein TERM 68 80004 - 79981 - g 73 -4.6 -5.00884 | gap 1 AGTGGGGTTAAAAAA GTGAGCG-TGA ATT TCACCACCCAC CACTTACAAATCGTG TERM 69 80808 - 80786 - g 71 -9.2 -2.57244 | opp_overlap 80786 TTAGCTATCAAGTGA GCGCGAATTT TCA AAACTCACGC CTTTCTAGTTTGCTA TERM 70 81752 - 81734 - g 91 -8.9 -5.0133 | TAGGGTTTGAAAAAA GCGCTTT GAGCA AAAGCGC ATGCGATATTTTGCT TERM 71 81812 - 81799 - g 71 -4.5 -4.83169 | AGTTTGTTAGAAAAA GCGCT TCAT AACGC TCAAAAAGTCTATCA copA 79645 - 81984 + | cation transporter E1-E2 family ATPase hypE 83139 - 82141 - | hydrogenase expression/formation protein hypF 85394 - 83142 - | transcriptional regulatory protein HypF TERM 72 84402 - 84379 - G 76 -2.5 -5.36689 | AAATCAAAAATAAAA TGAAAACGA TCCATC TCTTTTTCA TCGCTCGCTAAAGGG TERM 73 85214 - 85224 + g 75 -4.6 -5.03747 | opp_overlap 85214 CAATCAAAGCTAAAG GGGG CAA CTCC TTTTTTAGGGCGTTT TERM 74 85356 - 85345 - G 79 -7.2 -4.61199 | overlap 85346 AGGGTATAGATAAAA GGGC GCAT GCCC ACGCCTTGAACCACG TERM 75 85420 - 85400 - R 74 -9.1 -3.11988 | opp_overlap 85399, overlap 85399 TTTTATTCAATAAAG TTGCATCGT TAC ACAATGCAA ACTTCCATGCTGCTT Hac_0084 86383 - 85391 - | hypothetical protein TERM 76 86229 - 86248 + g 79 -9.4 -3.75229 | opp_overlap 86231 86233 TCGCTAGTATGGACA CACACTAA CACT TTAGTGTG TTTGGCTATGGTTTG dpnA 86668 - 86453 - | - COG0863L adenine specific DNA methyltransferase fragment 3 dpnA 86815 - 86708 - | - - adenine specific DNA methyltransferase fragment 2 dpnA 87089 - 86988 - | - - adenine specific DNA methyltransferase fragment 1 DDEM 87319 - 87152 - | - COG0270L cytosine specific DNA methyltransferase fragment 4 DDEM 87605 - 87354 - | - COG0270L cytosine specific DNA methyltransferase fragment 3 DDEM 87900 - 87595 - | - COG0270L cytosine specific DNA methyltransferase fragment 2 DDEM 88228 - 87983 - | - COG0270L cytosine specific DNA methyltransferase fragment 1 TERM 77 88746 - 88733 - g 71 -3.1 -5.0917 | TGATCAAAAAACAAA CGCTT ATAA AAACG GCGAATTGTTTCAAG Hac_0095 88497 - 89654 + | outer membrane protein 2 TERM 78 89660 - 89685 + T 74 -7.7 -3.86795 | opp_overlap 89665, overlap 89660 89665 TACTTTTTAAGGTTA TCAAAGCTTGA TTTT TCAAGCTTTTA TTTAGTGGCTTTTTT TERM 79 89665 - 89680 + T 89 -7.6 -4.9448 | opp_overlap 89665, overlap 89660 89660 TTTAAGGTTATCAAA GCTTGA TTTT TCAAGC TTTTATTTAGTGGCT TERM 80 89680 - 89665 - T 74 -7.6 -3.76492 | opp_overlap 89660 89665 89660 TTTAAGGTTATCAAA GCTTGA TTTT TCAAGC TTTTATTTAGTGGCT Hac_0096 91412 - 89973 - | hypothetical protein TERM 81 90339 - 90323 - G 71 -6.6 -4.07885 | opp_overlap 90322 TAGCGTTTTTTAAAA GATGGA TATAT TCCATC AGGTTTGTTTGATTG Hac_0097 92543 - 91509 - | hypothetical protein TERM 82 92588 - 92565 - R 87 -7.5 -4.82901 | opp_overlap 92557 92565 CCTTTGCCATAAAAA CCCTTTTGC ATGCGA GCAAAAAGG TTTTTTGTGCTTAAG TERM 83 92565 - 92588 + r 84 -5.3 -5.37345 | opp_overlap 92565, overlap 92557 CCTTTGCCATAAAAA CCCTTTTGC ATGCGA GCAAAAAGG TTTTTTGTGCTTAAG Hac_0098 93375 - 92599 - | hypothetical protein TERM 84 92947 - 92962 + g 79 -4 -5.40072 | ATCTTTCAGTGCTTT TAAGGT GAAT GCCTTA TTTTTTTGAGAGCGG Hac_0099 93524 - 94072 + | hypothetical protein TERM 85 94078 - 94104 + F 88 -8.8 -4.38712 | overlap 94079 CGCCCAATAAACTTT TTGCAAGAGATA GAT TGTCTCTTGCAC TTTTCTAGCAATACA TERM 86 94079 - 94103 + F 90 -12.3 -3.22906 | overlap 94078 GCCCAATAAACTTTT TGCAAGAGATA GAT TGTCTCTTGCA CTTTTCTAGCAATAC TERM 87 94680 - 94657 - g 93 -11.8 -4.20806 | overlap 94672 CACTTGAAAAGGAAA CCCCTAAGCT TGAA AGCTTAAGGG AACACTCTTGAGCTC Hac_0101 94509 - 94691 + | hypothetical protein murB 95731 - 94952 - | UDP-N-acetylenolpyruvoylglucosamine reductase fliQ 96001 - 95735 - | flagellar biosynthesis protein FliQ fliI 97316 - 96012 - | flagellum-specific ATP synthase virB11 98231 - 97317 - | virB11 protein ileS 101013 - 98248 - | isoleucyl-tRNA synthetase TERM 88 99081 - 99061 - G 70 -4.7 -4.65895 | opp_overlap 99060 99061, overlap 99063 TGTTTGAGTGAAAAA GGTTTGAGA GAC CCTCAAATC GTTTTGATAGTCATT Hac_0109 101298 - 101041 - | hypothetical protein TERM 89 101885 - 101909 + G 100 -7.9 -5.34309 | opp_overlap 101887, overlap 101887 ATTGAACTTGATTAA AACCCCTAAAG GCT TTTTAGGGGTG TTTTTATTTGATAAT TERM 90 101887 - 101907 + G 87 -10.5 -4.29436 | opp_overlap 101887, overlap 101885 TGAACTTGATTAAAA CCCCTAAAG GCT TTTTAGGGG TGTTTTTATTTGATA TERM 91 101907 - 101887 - g 86 -9.8 -4.28361 | opp_overlap 101887 101885 TGAACTTGATTAAAA CCCCTAAA GGCTT TTTAGGGG TGTTTTTATTTGATA Hac_0110 101400 - 102026 + | hypothetical protein TERM 92 102086 - 102059 - T 93 -8.4 -5.16206 | AAACGAATACAAAAA CTAGGAGCGACC CTAA AGTTGCCCCTAG CCACACCAATATTAC TERM 93 102530 - 102509 - T 71 -8.7 -2.87472 | AAAAGATAAAACCTA GGAGCAACC CTAA AGTTGCCCC ACAAACGCTCCGATC Hac_0111 102740 - 102492 - | hypothetical protein TERM 94 103232 - 103258 + G 72 -5.2 -4.69962 | opp_overlap 103233, overlap 103233 ATTAGCAGAAAAAGA CGCTCTTTTTTT AAA AGAAGAAGAGCC TTATTTTTTGATCTC TERM 95 103233 - 103257 + G 74 -8.7 -3.4035 | opp_overlap 103233, overlap 103232 TTAGCAGAAAAAGAC GCTCTTTTTTT AAA AGAAGAAGAGC CTTATTTTTTGATCT TERM 96 103683 - 103663 - g 91 -6.9 -5.48303 | opp_overlap 103663 103668 103669 ACAATCTTAAAAAAA GCGTTTCTT ATA AAGAAAAGC TTGATAAGGTGTTAG ksgA 102975 - 103790 + | dimethyladenosine transferase TERM 97 104011 - 104001 - g 75 -3.2 -5.31275 | overlap 104004 TCGCACCATAAAAAA GAGT GTC ACCC TAACAAAAAACCCAA TERM 98 105679 - 105657 - g 71 -3.4 -5.05606 | opp_overlap 105660 105673, overlap 105660 105662 GTGAATAAAAACAAA CAAGCGCTTT TAG AAAGCTCTCA ATTTTCTAGTTTAGG TERM 99 105676 - 105660 - g 70 -5.1 -4.5815 | opp_overlap 105660 105673, overlap 105657 105662 AATAAAAACAAACAA GCGCTTT TAG AAAGCTC TCAATTTTCTAGTTT Hac_0114 103827 - 105893 + | hypothetical protein TERM 100 106100 - 106076 - g 72 -2.1 -5.252 | overlap 106077 106097 TAGTGGCACAAAAAA TCAGTGCTT CCATGCT AAGCACCGG TAACAGGAGTGCGTT Hac_0115 105877 - 106866 + | hypothetical protein TERM 101 107115 - 107091 - g 71 -3.7 -5.0133 | overlap 107103 GATGGCTCTAAAAAA TACCTTTTTAA ATC TTTAAAAGATA ATCATACTTTTGAAG Hac_0116 106863 - 107924 + | hypothetical protein Hac_0118 108477 - 108112 - | hypothetical protein maf 109156 - 108593 - | Maf-like protein alaS 111701 - 109158 - | alanyl-tRNA synthetase TERM 102 110259 - 110239 - G 72 -4.7 -4.82901 | CCTTCTGCATAAAAA GGCGTTTTT TCT AACAACACC CAAACTTCTTGGTTA TERM 103 111345 - 111363 + g 73 -4.6 -4.86621 | opp_overlap 111339 GCTAATATACAAATC TTTAGGCT TAA ACCCTAAA TTTTTGGTTACAAAT TERM 104 111694 - 111684 - G 74 -5.4 -4.77925 | opp_overlap 111692 AAAAAATTGTAAAAA TTCG TTG CGAA TATCCATGGGTATTC Hac_0122 111819 - 112049 + | hypothetical protein TERM 105 112091 - 112078 - T 74 -6.7 -4.23434 | opp_overlap 112073 112078 TAAAACACGCTAAAA CGCTT TTAA AAGCG TTTGACTTGTGATTT ccpA 113385 - 112333 - | cytochrome c551 peroxidase TERM 106 113189 - 113207 + g 76 -3 -5.40072 | CCTAATTCCACTTGA GCGGGGGT CAT AATCTCGC TTTTTTTAGCACCAA TERM 107 113749 - 113732 - g 72 -2 -5.19212 | gap 1, overlap 113736 113743 ACGAGCATGAAAAAA GA-AGGC ATCAA GCCTATC ATAGGCATGGAAGCG dnaE 113552 - 117181 + | DNA polymerase III subunit alpha yciL 117178 - 117942 + | pseudouridylate synthase trxA 118006 - 118320 + | thioredoxin Hac_0127 118570 - 118728 + | hypothetical protein Hac_0128 118755 - 118931 + | hypothetical protein TERM 108 119238 - 119257 + G 74 -5 -5.0133 | opp_overlap 119238 GATAACCATGAGATA TTGCTTTC TGTG GATAGCAA TTTTTTAAACCACTA Hac_0129 119031 - 119390 + | hypothetical protein Hac_0130 119542 - 119703 + | hypothetical protein TERM 109 119993 - 119968 - g 86 -7.5 -4.85599 | opp_overlap 119968 TTGAGTCTAGAAAAA TCGCAAGCCAT TATC AAGGCGTGCGA TTGCATTTTAAAAGG fumC 119764 - 121155 + | fumarate hydratase TERM 110 121251 - 121222 - f 77 -3.1 -5.5353 | gap 1, opp_overlap 121230 CAGATGAAGAAAAAA TTAAAACAGAAAGA GAG TCTTACT-TTTTAA AATCAATAGCGTTCG TERM 111 122403 - 122413 + G 71 -8.2 -3.53811 | opp_overlap 122402, overlap 122402 122405 CGATTGCTAAACTAG GGGC TAC GCCC TTTCACAGGCATAGC rnhB 121877 - 122458 + | hypothetical protein Hac_0133 123042 - 122455 - | hypothetical protein TERM 112 122930 - 122916 - G 74 -5.7 -4.72986 | opp_overlap 122926 122929, overlap 122917 122918 TATTGCCATCAAAAA GGTTG GTTTT CAACC AATTAGGGTAGTTGG TERM 113 123072 - 123112 + r 74 -9.3 -3.05819 | opp_overlap 123070 123069 CATCAATTAAAATCT CTTGTATTTTTGGGATA GATGGGA TCTCTCAAAAATACAAG TGTTGGAAGTATATA Hac_0134 124350 - 123262 - | hypothetical protein TERM 114 123498 - 123483 - G 80 -7.6 -4.4261 | overlap 123477 CGCTTAAGATGAAAA TCCCAT TATC ATGGGA GTAAAGCTTGTGGTT rpsJ 124560 - 124874 + | 30S ribosomal protein S10 rplC 124908 - 125483 + | 50S ribosomal protein L3 TERM 115 125576 - 125558 - g 73 -4.5 -4.88918 | CCATTTGAAAGAAAA GGGTAGC ATGGA GTTACCC AAAAGATATGAGGGT rplD 125517 - 126164 + | 50S ribosomal protein L4 rplW 126168 - 126449 + | 50S ribosomal protein L23 rplB 126465 - 127295 + | 50S ribosomal protein L2 rpsS 127307 - 127588 + | 30S ribosomal protein S19 TERM 116 127774 - 127790 + G 79 -7.9 -4.21772 | CGCTAATGGCTCTTT GGACGCT AAA AGCGCCC TTATTGTTTCTTGCA rplV 127598 - 127966 + | 50S ribosomal protein L22 rpsC 127970 - 128674 + | 30S ribosomal protein S3 rplP 128677 - 129102 + | 50S ribosomal protein L16 rpmC 129104 - 129289 + | 50S ribosomal protein L29 rpsQ 129303 - 129563 + | 30S ribosomal protein S17 rplN 129566 - 129934 + | 50S ribosomal protein L14 rplX 129934 - 130155 + | 50S ribosomal protein L24 rplE 130167 - 130712 + | 50S ribosomal protein L5 rpsH 130917 - 131312 + | 30S ribosomal protein S8 TERM 117 131438 - 131418 - g 75 -3.3 -5.20331 | overlap 131419 131421 131432 AAACAATAAAGAAAA GCATGAGTT AGA AACTCATAA CCGAGTGAAAATCAC rplF 131323 - 131859 + | 50S ribosomal protein L6 rplR 131873 - 132229 + | 50S ribosomal protein L18 rpsE 132226 - 132687 + | 30S ribosomal protein S5 rplO 132705 - 133106 + | 50S ribosomal protein L15 secY 133149 - 134411 + | preprotein translocase subunit SecY map 134411 - 135172 + | methionine aminopeptidase infA 135172 - 135390 + | translation initiation factor IF-1 rpsM 135585 - 135947 + | 30S ribosomal protein S13 rpsK 135971 - 136366 + | 30S ribosomal protein S11 rpsD 136376 - 137002 + | 30S ribosomal protein S4 rpoA 137014 - 138048 + | DNA-directed RNA polymerase subunit alpha rplQ 138048 - 138398 + | 50S ribosomal protein L17 TERM 118 138519 - 138503 - f 74 -5.9 -4.70319 | CCATGAAAATTAAAA CAATGAT TTG ATCACTG CTTGCAATAAAAACA Hac_0162 138736 - 140208 + | hypothetical protein Hac_0163 140221 - 140856 + | hypothetical protein TERM 119 140861 - 140846 - f 71 -7.6 -3.43925 | opp_overlap 140848, overlap 140844 140842 CTAGCAACAAACACA TAGCGT TTTA ACGCTA TTAAAAAGGATTAGC lpp20 140878 - 141408 + | lipoprotein Hac_0165 141415 - 141771 + | hypothetical protein Hac_0166 141771 - 142673 + | hypothetical protein trmE 144142 - 142790 - | tRNA modification GTPase TrmE TERM 120 143724 - 143736 + g 74 -7.7 -3.93038 | overlap 143713 AGTTGCCTGGCTAGG GCGTT TAA AACGC TTTCATCTTCACATA Hac_0168 144947 - 144135 - | hypothetical protein TERM 121 144208 - 144227 + g 79 -3.6 -5.40474 | overlap 144212 ATGGAGACATATTTG TTGGGGAA CGCT TTCCTTAA TTTTTTTAAAGCGAT Hac_0169 146598 - 144958 - | putative inner membrane protein translocase component YidC TERM 122 145244 - 145211 - G 91 -9 -5.08255 | AGCGGTAAAATAAAA TACGGATCCATGAT GGATAG ATCGTGGATCCATA AAATCCACTCTGAGC TERM 123 145343 - 145359 + g 72 -2.2 -5.27923 | overlap 145345 GGCAGACAACCGCCT AATGGG TTAGC CCCATG TTTTTTGTAAAGTTG Hac_0170 146921 - 146604 - | hypothetical protein rnpA 147393 - 146932 - | ribonuclease P protein component TERM 124 147001 - 147015 + g 79 -7.2 -4.59853 | opp_overlap 147000 TTTAATGGAAATTAG CATTTC TAA GAAATG TTTTTCCAAAGTTAA exbD 147967 - 147572 - | hypothetical protein exbB 148430 - 147978 - | biopolymer transport protein smpB 148891 - 148433 - | SsrA-binding protein ipk 149694 - 148888 - | 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase TERM 125 149338 - 149328 - G 71 -4 -4.99134 | overlap 149321 AGCGTAAATCAAAAA TTTG ATT CAAA TGATACAATAGCCCT csrA 149921 - 149691 - | carbon storage regulator ppi 150422 - 149934 - | peptidyl-prolyl cis-trans isomerase Hac_0178 150551 - 151330 + | hypothetical protein TERM 126 151388 - 151402 + T 74 -8.6 -3.23733 | opp_overlap 151387, overlap 151372 151387 CCTTGTTTCAGCAAG GGCTTT TAA AAAGCC GTTTTGTAACCTGCA TERM 127 151614 - 151634 + T 76 -6.1 -4.60924 | opp_overlap 151633 GCATGAGAGTATTTT GGGTTAGCG TTT TGCTAAACC TTTTTAAAAAGTTTC TERM 128 151764 - 151741 - T 80 -9 -3.63627 | TTGTGATACGCTAAA GCTATTGTCA GAAA TAACAATAGC CTATCAAAAAAACGG TERM 129 152785 - 152770 - T 72 -9 -2.71912 | opp_overlap 152768 152764, overlap 152769 TGACATTGAGAGAAT CCGCTA GAAA TAGCGG GGTGTCTGGCTTGCC TERM 130 153271 - 153288 + T 74 -9.1 -3.07291 | opp_overlap 153271, overlap 153273 153276 GTCGTAACAAGGTAA CCGTAGG TGAA CCTGCGG TTGGATCACCTCCTT Hac_0179 153879 - 153445 - | hypothetical protein fragment 154412 - 154245 - | - putative restriction enzyme fragment 5 fragment 154717 - 154535 - | - putative restriction enzyme fragment 4 fragment 154866 - 154714 - | - putative restriction enzyme fragment 3 fragment 155105 - 154899 - | - putative restriction enzyme fragment 2 TERM 131 155110 - 155122 + r 76 -3.3 -5.39755 | opp_overlap 155111, overlap 155111 GGCACAAACAAAACA TGCTC TAT GGGCG TTTTTTCTAATTCTA fragment 155251 - 155135 - | - putative restriction enzyme fragment 1 Hac_0185 155403 - 156275 + | modification methylase mjai mod 156268 - 156540 + | - COG0863L type IIS restriction enzyme M1 protein fragment 1 TERM 132 156872 - 156858 - g 74 -7.8 -3.87551 | AGCATCAAACCTAAA GCGCTC ATT GAACGC ATGATAAAAGCCAGC mod 156528 - 157043 + | - COG0863L type IIS restriction enzyme M1 protein fragment 2 TERM 133 158077 - 158092 + G 75 -7.6 -4.0828 | TTTGTGTTTGGCTCG CTCTTC TATA GAAGAG TTTGATCTTTTAGAT Hac_0188 157172 - 158341 + | typeIIS restriction enzyme Hac_0190 158782 - 159423 + | putative two-component regulator TERM 134 159452 - 159431 - f 95 -5.9 -5.88471 | opp_overlap 159431 159430 CACTATGAAAAAAAA TCCCTTAAA CTCT TTTTAGGGA CTTATTTAGGCTCTT TERM 135 160207 - 160192 - g 73 -4.6 -4.88405 | overlap 160194 AATCCTTAAAGAAAA CACGCT TTTT AGCGAG ATGATAGACTACCAC TERM 136 160405 - 160384 - g 74 -5.3 -4.81249 | gap 1 TTTGAAAGTGAAAAA TTTAGGGTAT GAA AT-CCCTAAA GACAAGATCACAGAA Hac_0191 159479 - 160591 + | signal-transducing protein, histidine kinase TERM 137 161297 - 161274 - g 100 -7.5 -5.85178 | opp_overlap 161274 161293, overlap 161275 AAGAGGGAAAAAAAA CGCCCATAA AGGCGA TTATGGGCA TGTGCATGCACTTTT TERM 138 161296 - 161275 - g 79 -8.8 -4.08666 | opp_overlap 161274 161293, overlap 161274 AGAGGGAAAAAAAAC GCCCATAA AGGCGA TTATGGGC ATGTGCATGCACTTT Hac_0192 160594 - 161988 + | hypothetical protein dnaB 162000 - 163460 + | replicative DNA helicase TERM 139 163478 - 163456 - f 84 -10 -3.452 | TTGAAATACCCATAA CTTGAAAGAT AAA ACCTTTCAAG GGGCGTTTGATATTC TERM 140 164412 - 164441 + G 70 -7.2 -3.82378 | opp_overlap 164434, overlap 164394 164433 164434 164436 TTCAAGCCATAAGCT TGAGCGTGTTGG TGTTTT CAAACATGCTCA TTGTTGTGCATGCCT TERM 141 164592 - 164612 + G 70 -2.6 -5.06103 | TTTTAAGCATGCCTT TAGAAATC CCCAC GATCTCTA TTTTTTCGCCCTTAT comE 163457 - 164773 + | DNA transfer protein ComE TERM 142 165100 - 165085 - g 72 -9 -3.26932 | overlap 165080 ATAAGGATAACCCAA GGACGA AAAA TCGTCC GAGCGTAGATGGTAG ubiA 164844 - 165728 + | prenyltransferase TERM 143 166083 - 166098 + G 71 -3.2 -5.05782 | GCGTTGTGTGTTAGA GGGAAG AATC CTTGCC TTTTTTGGCGTGGCT Hac_0196 165730 - 166215 + | hypothetical protein Hac_0197 166228 - 166734 + | hypothetical protein psd 166728 - 167531 + | phosphatidylserine decarboxylase TERM 144 167994 - 167976 - g 80 -6.2 -5.07652 | CGCCCTAAAACAAAA TAAAAAAA TCT TTTTTTTA CCCGATCGGTGTTTG TERM 145 168339 - 168321 - g 74 -9.6 -3.10677 | overlap 168308 168312 AAGCAATTTAGTCAA TCGCTTGA AAG CCAAGCGA AATGATCAAAACACT nadA 167521 - 168531 + | quinolinate synthetase TERM 146 169199 - 169213 + G 71 -4.3 -4.79752 | AATTGCCGCTTATAG GGATA TGCAT TATCC TTTTGTCTTATTAGA nadC 168531 - 169352 + | nicotinate-nucleotide pyrophosphorylase TERM 147 170119 - 170100 - g 70 -5 -4.59773 | CTCCATTCCTAAAAA TTTCGCTG TGAT CAGAGAAA TGGCGGATTTTTTAA TERM 148 170799 - 170779 - g 76 -6.9 -4.329 | CAAGAGATTAAGAAA GATGAAAAG ATC CTTATCATC ACCGGCAATCCCCCT fragment 169378 - 171972 + | COG0286V,COG4889R putative adenine specific DNA methyltransferase fragment 1 TERM 149 172696 - 172714 + G 71 -4.4 -4.84353 | opp_overlap 172685, overlap 172695 172698 ACATCTACCGCAGAG GCGGGGGC TCA GCCTTCCC TTTATTTTGCTTTAT fragment 172032 - 172733 + | COG4889R putative adenine specific DNA methyltransferase fragment 2 Hac_0204 173153 - 173458 + | hypothetical protein Hac_0205 173498 - 173992 + | hypothetical protein pnuC 174178 - 174840 + | hypothetical protein TERM 150 175192 - 175207 + G 70 -6.2 -4.20148 | GCCAAAAACTCCAAG CCATAA GCGA TTATGG TTGTTTTAGGGTGCT Hac_0207 174837 - 175439 + | hypothetical protein Hac_0208 175488 - 176681 + | hypothetical protein algC 178048 - 176660 - | hypothetical protein TERM 151 176910 - 176922 + g 83 -5.5 -5.4505 | TCAAATTTTTCTTCT TCGCT CAC GGCGA TTTTTTCTTCAGGCG pflA 180433 - 178049 - | paralysed flagella protein TERM 152 178385 - 178399 + g 73 -4.2 -4.96646 | TGTGGCATAAATTTT GACGCT TGT AGGGTC TTTTTCATTCTCTAA TERM 153 179803 - 179838 + g 71 -3.4 -5.08015 | opp_overlap 179792 179814, overlap 179804 179806 TAAACGCACGGCTGA TGG-TGCGCAAAGCCT CAAAAT AGGCTT-GCGAATCCA TTTGTTTTTTAGCTT nuoN 181931 - 180453 - | NADH dehydrogenase subunit N TERM 154 180793 - 180773 - G 85 -4.7 -5.61881 | opp_overlap 180788, overlap 180788 GCCCAAAAACAAAAA TAGCGCCTA AAA TAGCCACTA AAGGGTGGGTTTTGA TERM 155 181400 - 181384 - G 76 -2.9 -5.38326 | GTAAGCAAATAAAAA GCCATCG CCC CCATAGC AAAAAACGCACTCGC nuoM 183456 - 181918 - | NADH dehydrogenase subunit M nuoL 185298 - 183460 - | NADH dehydrogenase subunit L TERM 156 183805 - 183793 - G 70 -7.7 -3.65314 | overlap 183795 GGCAATGCTCAATAA CACCA CAA TGGTG GTAACACTGATCAAA nuoK 185603 - 185301 - | NADH dehydrogenase subunit K nuoJ 186148 - 185600 - | NADH dehydrogenase subunit J TERM 157 186050 - 186034 - G 70 -2.9 -5.06505 | overlap 186035 186037 AAGCAGAGATAAAAA CCATGCT ACT AGCAAGA GCGGTAATGGCATAG nuoI 186803 - 186141 - | NADH dehydrogenase subunit I TERM 158 186300 - 186288 - G 72 -4.8 -4.71482 | opp_overlap 186296 ACCAAAGCCTAAAAA CTCG GCATG CGAG CAATCTTTAGCGTCT nuoH 187802 - 186813 - | NADH dehydrogenase subunit H TERM 159 187058 - 187045 - G 79 -2.3 -5.56263 | opp_overlap 187045 ATCACAAAAGAAAAA GCGAA TAAA TGCGC GTATTCTGCCAAAAA nuoG 190291 - 187799 - | NADH dehydrogenase subunit G TERM 160 188690 - 188702 + g 70 -6.3 -4.32046 | opp_overlap 188689 188690, overlap 188686 188685 TTCTTCGCCTACAAC CAACA AGG TGTTG TTTGATTTTTGCAAA nuoF 191280 - 190288 - | NADH dehydrogenase I chain F TERM 161 190670 - 190656 - G 93 -10 -5.09426 | opp_overlap 190654 TTGAATGGTAAAAAA CAGGTG TTG CACCTG AATCATTACAAGGAA TERM 162 190991 - 190977 - G 71 -4.2 -4.76312 | overlap 190978 CATAAGACGCAAAAA GGCAAG TTT CTTGCA AATCTCTCGTATCTT nuoE 191507 - 191277 - | NADH dehydrogenase I chain E TERM 163 191427 - 191414 - G 79 -4.5 -5.19879 | CTTCAAACATAAAAA TGGCG ACTT CACCA AATTGCATTTCTTTT nuoD 192733 - 191504 - | NADH dehydrogenase subunit D TERM 164 191690 - 191672 - G 79 -4.6 -5.31456 | opp_overlap 191672 TGAATGGATAAAAAA CCCTAA TTCCCCT TTAGGG CTTTCTGTGGGAGCA TERM 165 192095 - 192107 + g 79 -6.2 -4.85599 | opp_overlap 192090 192094 ATTTTCCAAACGCAT CCGC CAAAT GCGG TTTTTATCCAATAAG nuoC 193532 - 192735 - | NADH dehydrogenase subunit C nuoB 194011 - 193532 - | NADH dehydrogenase subunit B nuoA 194412 - 194011 - | NADH dehydrogenase subunit A TERM 166 194512 - 194552 + r 70 -7.2 -3.69341 | opp_overlap 194518, overlap 194513 194518 ATAAAAATTAGACAC TTAAAACCTTATTTTTAA TCTCT TAAAAAATAGGGTTTTAG TTACTTTGTGTTAAA TERM 167 194513 - 194551 + r 71 -8.5 -2.80881 | opp_overlap 194518, overlap 194512 194518 TAAAAATTAGACACT TAAAACCTTATTTTTAA TCTCT TAAAAAATAGGGTTTTA GTTACTTTGTGTTAA TERM 168 194670 - 194691 + r 72 -5.9 -4.48583 | overlap 194672 TTTTTAAAGAGGCTA TCGCTTGAT TAAA ATCAAGCTA TTTATTATATTAGTT TERM 169 194672 - 194689 + r 79 -8.5 -3.83144 | overlap 194670 TTTAAAGAGGCTATC GCTTGAT TAAA ATCAAGC TATTTATTATATTAG TERM 170 194787 - 194776 - R 78 -5.8 -4.81752 | overlap 194769 194757 AAAAAGATTTAAAAA CCTC TTAA GAGG CCATCTCTATGAGTT cobT 195469 - 194780 - | nicotinate mononucleotide:5,6-dimethylbenzimidazole phosphor Hac_0227 195921 - 195469 - | hypothetical protein TERM 171 195829 - 195819 - G 73 -4 -5.06735 | TATAAATCATAAAAA TATC GGT GATA AAGGCCTTTAAGCGT TERM 172 195858 - 195872 + g 74 -7.8 -3.90729 | GTAAAGAGAGATTCA GCCCTT TTA AGGGGC TTTCTAACGCTTGTT pyrE 196516 - 195911 - | orotate phosphoribosyltransferase TERM 173 196039 - 196012 - G 76 -5.6 -4.98531 | gap 1, overlap 196006 196015 CTTCTAAAGCAAAAA GAGGCA-GTTCGC TAG GCAAACATGCATC CTCTTGAGCCTTTAA frr 197077 - 196520 - | ribosome recycling factor secG 197640 - 197077 - | preprotein translocase subunit SecG bioC 197757 - 198482 + | biotin synthesis protein BioC, putative TERM 174 199240 - 199218 - g 83 -4 -5.56112 | overlap 199222 AGAAAAATCAAAAAA GCGACCACGG ATT CCATAGGCAC TATTCAATTTGATGC trpS 198540 - 199532 + | tryptophanyl-tRNA synthetase oppA 199533 - 199994 + | - COG4166E ABC-type oligopeptide transport system,periplasmic component fragment 1 TERM 175 200294 - 200304 + G 83 -6.8 -5.09225 | AAAGATGAAACCGTC GCCT TGC AGGC TTTTTTGAGTGGGGT TERM 176 200435 - 200424 - g 72 -5.8 -4.386 | TAATCGCCCACAAAA TGCC AAGT GGCA TGCAAGGGTTTTTTT oppA 199991 - 200452 + | - COG4166E ABC-type oligopeptide transport system,periplasmic component fragment 2 oppA 200430 - 200654 + | - COG4166E ABC-type oligopeptide transport system,periplasmic component fragment 3 oppA 200680 - 200775 + | - - ABC-type oligopeptide transport system,periplasmic component fragment 4 oppA 200848 - 201120 + | - COG4166E ABC-type oligopeptide transport system,periplasmic component fragment 5 oppA 201133 - 201258 + | - COG4166E ABC-type oligopeptide transport system,periplasmic component fragment 6 oppB 201336 - 201455 + | - - oligopeptide ABC transporter, permease protein fragment 1 oppB 201476 - 201709 + | - COG4174R oligopeptide ABC transporter, permease protein fragment 2 oppB 201712 - 202305 + | - COG4174R oligopeptide ABC transporter, permease protein fragment 3 TERM 177 202371 - 202360 - f 81 -4.4 -5.5112 | opp_overlap 202360, overlap 202353 GTTAGTAATAAAAAA TGCT TTTT AGCA TTTTTAAAAATAAAC Hac_0243 202589 - 203164 + | hypothetical protein TERM 178 203368 - 203387 + G 76 -8.6 -3.71917 | overlap 203353 203369 GGGCTAATGTAACCT TGCCCTTT AAAG AAAGGGCG TTTCAAGTTTGCGAT TERM 179 203369 - 203386 + G 74 -9.9 -2.82668 | overlap 203353 203368 GGCTAATGTAACCTT GCCCTTT AAAG AAAGGGC GTTTCAAGTTTGCGA aroE 203172 - 203963 + | shikimate 5-dehydrogenase TERM 180 204335 - 204319 - g 73 -3 -5.27476 | CTTAACAAAAGAAAA TAACCA AATTG TGGCTA TCCCTTTTAAAGAGC TERM 181 204842 - 204856 + G 72 -8.6 -3.32561 | opp_overlap 204842 204841, overlap 204834 204835 GCATGCTCGCTAAAG GCGTTT GAA AAACGC TTAGCTTTGGTGTAT vacB 203963 - 205897 + | ribonuclease R TERM 182 206370 - 206344 - g 71 -6.6 -4.11216 | TTTTTACCCCTAAAA CTTGGGAGAGTT TGA AACTCTTACAAG AAAGGGCTAATGTTT dnaX 205902 - 206909 + | DNA polymerase III subunit delta TERM 183 206905 - 206917 + F 72 -2.7 -5.40072 | opp_overlap 206899 206912, overlap 206907 206912 AAAAGATTATTAATC CTTAA AAT TTAGG TTTTTTTGCAAAAAC TERM 184 207138 - 207128 - f 71 -5.4 -4.62336 | opp_overlap 207128 207129 207130, overlap 207129 207130 ATGTGATTGTAAAAA TGCT AAA AGCA TTTTAGATTGTAGGT rpsF 207262 - 207690 + | 30S ribosomal protein S6 ssb 207706 - 208251 + | single-strand DNA-binding protein TERM 185 208300 - 208287 - g 89 -3.8 -5.82316 | ATTATGGAAAAAAAA CGCT ATTCAA AGCG CTATTGCAGATACAC rpsR 208275 - 208532 + | 30S ribosomal protein S18 TERM 186 208561 - 208548 - f 75 -9.5 -2.94218 | opp_overlap 208548 ACTTTTGATTAGATA GGGGG CATG CCCCC TTTGTCTTTAATCTT TERM 187 208548 - 208561 + F 91 -9.5 -4.39414 | opp_overlap 208548 ACTTTTGATTAGATA GGGGG CATG CCCCC TTTGTCTTTAATCTT TERM 188 208667 - 208650 - f 80 -5.6 -5.15526 | opp_overlap 208649, overlap 208643 208638 AGACAAAATCAAAAA GCTTGA TTTTAG TCAAGC GGTAGTTTTCTAGGA TERM 189 209228 - 209245 + G 78 -5.5 -5.0538 | AATAATTTAGATGTC GCCATTG TAGG CAAAGGC TTTTTTCAAGTCCAG flgG 208943 - 209731 + | flagellar basal body rod protein FlgG Hac_0253 210258 - 209728 - | hypothetical protein nusB 210729 - 210313 - | transcription antitermination protein NusB TERM 190 210392 - 210416 + g 74 -10.1 -2.64695 | overlap 210391 GGGGTGTTAGGCTCA GCGTAGAGTTT GCC AAGCTCTATGC ATTCATTGATGATGA ribH 211201 - 210731 - | riboflavin synthase subunit beta kdsA 212042 - 211212 - | 2-dehydro-3-deoxyphosphooctonate aldolase TERM 191 211633 - 211649 + g 72 -2.2 -5.28683 | TATTGCATGTCTTTT GGGC TCATGAATT GCCC TTTTTTAATATTGAT cynT 212694 - 212029 - | hypothetical protein TERM 192 213154 - 213136 - g 80 -5.9 -5.04987 | AACACTCTTAAAAAA CGCCCCT TGATC ATGGGCG TGAGCGCTTTAACGA pyrF 212815 - 213498 + | orotidine 5'-phosphate decarboxylase TERM 193 213710 - 213724 + G 72 -7.2 -3.89215 | TAGTGCTTATCCGCG TCCTTT AGA AAAGGA TTTGGCTTTATGCGA panC 213501 - 214331 + | pantoate--beta-alanine ligase Hac_0260 215457 - 215110 - | hypothetical protein Hac_0261 216137 - 215451 - | hypothetical protein dnaJ 217252 - 216137 - | chaperone protein dnaJ TERM 194 216913 - 216924 + g 84 -5.8 -5.2696 | TTTGCAAATAATCCG GTGC GATA GCAC TTTTTTGCCTTTTAC TERM 195 218141 - 218127 - g 74 -5.7 -4.72486 | TAGAAACTTTAAAAA CGCAT TTTTT ATGCG ACAAAGAAAACCTAA Hac_0263 217376 - 218524 + | hypothetical protein trmU 219599 - 218571 - | tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase TERM 196 218755 - 218768 + g 71 -3.9 -4.92828 | opp_overlap 218755 TCGCCACTTTTAAAA TCTTT CATC AAAGA TTTGTTTTTAGCTTT TERM 197 219447 - 219459 + g 74 -5.5 -4.84527 | GCCTAAAAACTCGCA CGCTT TTT GAGCG TTTTTAATGTATAGA Hac_0265 219744 - 220505 + | hypothetical protein nadD 221002 - 220502 - | nicotinate-nucleotide adenylyltransferase Hac_0267 221458 - 221012 - | nickel responsive regulator TERM 198 221426 - 221440 + g 70 -5 -4.65458 | AGAAACCGAAAAGCG GATGAT TGA ATCGTC TTTATTGTTTGTGTC TERM 199 221802 - 221815 + G 73 -3.8 -5.11033 | TTCGTGTTTGTTGCA CTCG GCATTG CGAG TTTTTTAGCCTTATG exbB 221739 - 222179 + | biopolymer transport protein exbD 222176 - 222565 + | hypothetical protein tonB 222531 - 223400 + | siderophore-mediated iron transport protein TERM 200 223431 - 223403 - T 100 -10.5 -5.04082 | opp_overlap 223412 GAAAGAAGAATAAAA TCTTAAAAATGCT AAC AGCGTTTTTAAGA GTAAAGAGCTTGATT TERM 201 223458 - 223437 - T 72 -7.3 -3.92324 | overlap 223439 GTTTTTAAGAGTAAA GAGCTTGAT TTCA ATCAAGCGC TAGCGTAAAAGAGGT TERM 202 223456 - 223439 - T 76 -8.5 -3.55084 | overlap 223437 TTTTAAGAGTAAAGA GCTTGAT TTCA ATCAAGC GCTAGCGTAAAAGAG Hac_0272 224366 - 223638 - | hypothetical protein corA 225329 - 224373 - | magnesium and cobalt transport protein pgk 226553 - 225345 - | phosphoglycerate kinase gap 227560 - 226568 - | glyceraldehyde 3-phosphate dehydrogenase ung 228347 - 227646 - | uracil-DNA glycosylase TERM 203 228328 - 228303 - G 79 -6.9 -4.56597 | gap 1 TTCGCTTTGTAAAAA CTCCCGCCAAGC TAG GCTTAA-GGGAG CGTAATCAAAAAGCT plsC 229026 - 228334 - | 1-acyl-sn-glycerol-3-phosphate acyltransferase,putative Hac_0278 230200 - 229040 - | hypothetical protein TERM 204 229336 - 229322 - G 73 -2.7 -5.19251 | CAATACCAAGAAAAA CACGC ATAAA GCGAG CAACACCACATTAGA ctpA 231586 - 230225 - | carboxy-terminal processing protease TERM 205 230610 - 230622 + g 80 -6.3 -5.02074 | AACACTTGCACGCTT CCTTT ACC AAAGG TTTTTTCACCGATAA TERM 206 230984 - 230970 - G 73 -7.2 -4.128 | opp_overlap 230954 230970 230969, overlap 230952 ACCCTTATATATAAA TAAGGA GTG TCCTTA ATCTTTTTCACAGAG TERM 207 231749 - 231727 - H 73 -7.8 -3.59279 | opp_overlap 231733, overlap 231733 GAGTATAATAACCAA GGAAAACTTG TGT CAAGTTTTAC TCAAAGAGATTAAAA gcp 231805 - 232833 + | O-sialoglycoprotein endopeptidase TERM 208 233816 - 233806 - T 74 -5.4 -4.84033 | overlap 233792 ACATAAAAAGGAAAA CCAT TTA ATGG TGTAACCCCTACCAA dcm 235211 - 233955 - | site-specific DNA-methyltransferase Hac_0284 236301 - 235201 - | hypothetical protein TERM 209 235368 - 235352 - G 93 -5.2 -5.79588 | overlap 235359 GTAAAACTAAAAAAA GCAAAA TCATC TTTTGC GATGTTAAGCCATGA TERM 210 236368 - 236324 - R 93 -9.5 -4.58395 | opp_overlap 236324 236328 236332, overlap 236332 TGGATTGTTTAAAAA TCATGAAAGTTTTTAAGTGCA AAA TGCACTTAAAAACTCACTTCA TTTGCAAAGCCACTT TERM 211 236328 - 236364 + r 91 -12.5 -3.51232 | opp_overlap 236324 236332, overlap 236324 236332 TTGTTTAAAAATCAT GAAAGTTTTTAAGTGCA AAA TGCACTTAAAAACTCAC TTCATTTGCAAAGCC TERM 212 236360 - 236332 - R 100 -16.3 -3.96337 | opp_overlap 236328 236324 236332, overlap 236324 TTAAAAATCATGAAA GTTTTTAAGTGCA AAA TGCACTTAAAAAC TCACTTCATTTGCAA TERM 213 236332 - 236360 + r 100 -16.3 -2.6342 | opp_overlap 236332 236324, overlap 236328 236324 TTAAAAATCATGAAA GTTTTTAAGTGCA AAA TGCACTTAAAAAC TCACTTCATTTGCAA tsf 237428 - 236361 - | elongation factor Ts TERM 214 236646 - 236657 + g 71 -4.4 -4.72007 | TTGCTCTTTCAATTC GTCT TCAA AGAC TTTCTTTTGATGGGC TERM 215 236886 - 236898 + g 95 -5.5 -5.71638 | TCTAGCTAGTTCAAC CGCTT TTG GAGCG TTTTTTTCATTATTG TERM 216 237337 - 237353 + g 70 -3 -5.05782 | gap 1 TTTTGCAAATCCCCA GCCACTT CCAC AAG-GGC TTTTTTGCAATCCAT rpsB 238222 - 237482 - | 30S ribosomal protein S2 TERM 217 237705 - 237717 + g 81 -3.3 -5.63517 | TGGAGTTTTCGCGCT TCGGC GAC GGCGA TTTTTTCTTTAGCCA TERM 218 239492 - 239475 - g 76 -5.7 -4.92363 | overlap 239463 AAATAGCTATAAAAA TAACTAT AAAA ATAGTTA CGGAAACATGCCGGC TERM 219 240163 - 240173 + G 79 -6.8 -4.84359 | opp_overlap 240163 GCTTTAGCTGAAGAA GGCT ATA AGCC TTTTTATAAGCATAG TERM 220 240386 - 240376 - g 71 -4 -4.8543 | GAATTTTTAGAAAAA TTAG AGA CTAA AAAGATCGCTTCTTT pcrA 238474 - 241374 + | ATP-dependent nuclease subunit A TERM 221 241469 - 241481 + G 72 -5.5 -4.59109 | AAGCGAGTCTTTTGG GGGGA TTT TCCTC TTTTTAAACGCTGTG TERM 222 241554 - 241579 + G 81 -3.3 -5.63504 | gap 1, overlap 241555 TTTGCTCTATGGCAC ACCCCT-TTTGG GTT TCAAATAGGGGA TTTTTTTATCGGCTT nhaA 241398 - 242714 + | hypothetical protein yajC 242763 - 243053 + | preprotein translocase subunit YajC secD 243054 - 244634 + | preprotein translocase subunit SecD secF 244643 - 245614 + | preprotein translocase subunit SecF Hac_0292 245624 - 245962 + | hypothetical protein leuS 245972 - 248392 + | leucyl-tRNA synthetase Hac_0294 248389 - 248907 + | hypothetical protein folC 248912 - 250072 + | folylpolyglutamate synthase / dihydrofolate synthase tagE 250072 - 250998 + | toxR-activated gene TERM 223 251748 - 251771 + GF 79 -6.8 -4.65895 | gap 1, opp_overlap 251748 GGAATGAGCACAGGA CCGCATTTGCA TTA TG-AAGTGCGG TTTTTGAATCAGCCC tagE 251007 - 251942 + | toxR-activated gene Hac_0298 251861 - 252268 + | hypothetical protein TERM 224 252728 - 252746 + G 82 -5.2 -5.40072 | TTTATGCACCTAATT CTAAGGCG TAT CGCTTGAG TTTTTTTGACACAGA TERM 225 255167 - 255149 - g 73 -9.6 -2.98508 | overlap 255146 255144 TCAATCAAAATATCA CCATCGCT TAT AGCGATGA AACTAAAGGGAGTCT mfd 252268 - 255282 + | transcription-repair coupling factor TERM 226 255639 - 255625 - g 75 -4.3 -5.04249 | opp_overlap 255608, overlap 255638 GTTCTAAAAAAGAAA GCTTT AACGA AAAGC GCGATTTTAAAATCG fbcF 255396 - 255899 + | cytochrome b6-F complex iron-sulfur subunit fbcB 255911 - 257149 + | ubiquinol cytochrome c oxidoreductase,cytochrome b subunit TERM 227 257305 - 257295 - g 77 -6.8 -4.62783 | TATTGATTTGAAAAA TGGC GAT GCCA ATAGGGGCAAACAGC fbcC 257146 - 258003 + | ubiquinol-cytochrome c reductase cytochrome c1 subunit TERM 228 258401 - 258428 + G 73 -2.6 -5.27476 | gap 1, overlap 258406 ACTGCTTTGCCACCG CCTAGCGCATGCG TTG CACAAGCG-TGGG TTTTATTTTATTGCA cysE 258252 - 258803 + | hypothetical protein TERM 229 259091 - 259048 - f 70 -7.1 -3.71873 | gap 2, opp_overlap 259048 259053, overlap 259051 259056 259089 TCATCTATAGCTAAA GAATTTAACTTGGAGTTTGAT AAGG AGCAAACTCCAAG--AAATTC TATTGATAGAATACG TERM 230 259085 - 259056 - f 90 -12.3 -3.33911 | opp_overlap 259053 259048, overlap 259051 259048 AGCTAAAGAATTTAA CTTGGAGTTTGAT AAGG AGCAAACTCCAAG AAATTCTATTGATAG Hac_0305 259057 - 259575 + | ulcer-associated gene restriction endonuclease hpyIM 259584 - 260573 + | adenine-specific methyltransferase TERM 231 260615 - 260625 + T 80 -5.4 -5.27206 | opp_overlap 260615 TCCATTTTAATCAGA CTTG ATG CAAG TTTTTCTTATATCTA kdsB 261570 - 260839 - | 3-deoxy-manno-octulosonate cytidylyltransferase Hac_0308 261670 - 262458 + | hypothetical protein Hac_0309 262474 - 263121 + | hypothetical protein TERM 232 263706 - 263716 + G 81 -6.8 -5.00616 | opp_overlap 263706 AATATTGAAGAAGAA CGCA CCA TGCG TTTTTTACAAGACGC Hac_0310 263136 - 264308 + | hypothetical protein Hac_0311 264308 - 264838 + | hypothetical protein sdaA 266291 - 264924 - | hypothetical protein sdaC 267532 - 266291 - | serine transporter TERM 233 266537 - 266549 + g 71 -4.1 -4.87318 | TACACCCACGCTCAA GGTTT TAG AAGCC TTTTTCAATTTTAAG TERM 234 267827 - 267817 - g 78 -5.4 -5.14477 | GAGAGAGTTAAAAAA GAGT TGC ACTC CTACCCTCCTTTAGT TERM 235 268760 - 268744 - g 79 -5.1 -5.27335 | opp_overlap 268744 268742, overlap 268746 GTGTTGAAAGAAAAA CGCCATA TCT TATGGAG TATTGATCCCATGCA aroAII 267718 - 269067 + | phospho-2-dehydro-3-deoxyheptonate aldolase Hac_0315 269504 - 269343 - | hypothetical protein TERM 236 269535 - 269501 - G 91 -8.8 -5.05606 | opp_overlap 269513 269530, overlap 269504 CTGAACAAAAATAAA TCATTGTAAAAATGCT TTT AGCGTTTTTACAATCA AAGGTTGGTTTTAGT TERM 237 269532 - 269504 - R 83 -10.5 -3.35433 | opp_overlap 269513 269530, overlap 269501 AACAAAAATAAATCA TTGTAAAAATGCT TTT AGCGTTTTTACAA TCAAAGGTTGGTTTT bcp 270166 - 269708 - | bacterioferritin comigratory protein Hac_0318 270811 - 270176 - | hypothetical protein Hac_0319 272249 - 270804 - | putative iron-sulfur electron transport protein Hac_0320 273001 - 272273 - | putative Fe-S oxidoreductase TERM 238 272314 - 272334 + g 73 -4 -5.08824 | AGTCATAAAAATGCA TGGGTTTT GTTGA AGAGCCCA TTTTTTGCATAGCGG TERM 239 273802 - 273819 + G 100 -7.7 -5.47159 | AGATTTCTCAAATGG TGGGCAG GGTG TTGCCCA TTTTTTCTATTGGCA lldP 273222 - 274868 + | hypothetical protein Hac_0322 275109 - 274819 - | hypothetical protein mutY 275983 - 275114 - | A/G-specific adenine glycosylase citT 277549 - 276101 - | citrate carrier TERM 240 276738 - 276724 - G 70 -5.8 -4.3129 | GACTGAGCATTAAAA TTTCTT TTA AAGAAA ACCTCCCCATGCCCT TERM 241 277463 - 277449 - G 76 -2.8 -5.38398 | ATAAAAACACAAAAA TAAAGC CAT GCGTTA GGATTTAGCCCACTA fixN 277745 - 279232 + | cytochrome c oxidase subunit I fixO 279237 - 279926 + | cb-type cytochrome c oxidase subunit II fixQ 279937 - 280155 + | cb-type cytochrome c oxidase subunit IV fixP 280157 - 281035 + | cb-type cytochrome c oxidase subunit III Hac_0329 281046 - 281252 + | hypothetical protein TERM 242 281286 - 281300 + F 84 -10 -3.41527 | AAATCTTAGCCCTAA TGGTCG TAG CGACCA TTCTAATGACGATTG Hac_0330 281353 - 281940 + | hypothetical protein Hac_0331 281953 - 282540 + | hypothetical protein TERM 243 282775 - 282792 + F 86 -9.9 -3.63315 | opp_overlap 282773, overlap 282773 TTTTAAGAGATTATC GCTTGAC TGGC GTCAAGC TCTTTACTATTTTAT TERM 244 283587 - 283603 + G 87 -8.1 -4.84311 | overlap 283595 TCTTTTATGGGGAGT GGATTTT TTA AAAATCC TTTTATTGTATGGAG Hac_0334 282892 - 283659 + | hypothetical protein Hac_0335 284519 - 283656 - | hypothetical protein TERM 245 283914 - 283929 + g 84 -7.6 -4.72986 | TAAGGCGGTTTCAAT GGCTTT AATC AAAGCC TTTTTAATCAAAATC TERM 246 285571 - 285535 - g 86 -8.2 -4.57474 | GCAAGGCAGAGAAAA CGCTAAAGCTTTAT TGAAAGAAG ATAAAGCCCTAGCG AATGAAATCATTCTT recA 284618 - 285661 + | recombinase A TERM 247 286278 - 286262 - g 80 -3 -5.52384 | gap 1, overlap 286265 TTTGGATGAAAAAAA CCA-GCT CACA AGCGTGG GCGATGAAGGGGGCT TERM 248 286671 - 286661 - g 93 -4 -5.86061 | opp_overlap 286663 GGGTATTAAAAAAAA CATT GCC AATG CGATTTTAATCAAAC eno 285672 - 286952 + | phosphopyruvate hydratase TERM 249 286947 - 286957 + G 77 -6.8 -4.57073 | opp_overlap 286947 286946 GAGTTGTTTAAACAT GGCT GAG AGCC TTTTTGAAAACGATG TERM 250 287177 - 287166 - g 73 -4.4 -4.99134 | opp_overlap 287170 287176, overlap 287170 ATTGCAAAGCAAAAA TGCA CGCT TGCA AAAGCGTTTGTTTGA TERM 251 287170 - 287183 + G 75 -6.7 -4.50159 | opp_overlap 287166 287170, overlap 287176 CAAAGCAAAAATGCA CGCTT GCAA AAGCG TTTGTTTGAATTGAA Hac_0338 286945 - 287220 + | hypothetical protein Hac_0339 287232 - 287828 + | hypothetical protein aroK 287833 - 288321 + | shikimate kinase Hac_0341 288342 - 289298 + | hypothetical protein rfaJ 290398 - 289295 - | lipopolysaccharide 1,2-glucosyltransferase TERM 252 290671 - 290659 - g 70 -4.8 -4.62069 | overlap 290669 290670 GGCGTACCTTAAAAA GGCT AATCA AGCC CTTAAGATGGGGCAC TERM 253 290846 - 290859 + G 73 -8.1 -3.66139 | overlap 290857 AATTTGCACGATCGC CTCGC TTGC GCGAG TTTGGGCTCTATGTA Hac_0343 290558 - 291454 + | hypothetical protein Hac_0344 292841 - 292119 - | hypothetical protein hemB 293813 - 292842 - | delta-aminolevulinic acid dehydratase Hac_0346 295163 - 293889 - | two-component sensor histidine kinase TERM 254 294078 - 294041 - G 70 -8.7 -3.05647 | gap 2, opp_overlap 294040 294041, overlap 294039 294054 TTTTAATGATATACA TGCCTAACCCAAAGCCA TGGGCT TGGCTT-GGGTTAGG-A GATTTAAAATAAGGT ompR 295864 - 295187 - | response regulator TERM 255 296262 - 296272 + r 87 -5.4 -5.62045 | opp_overlap 296262 TGTTGATTGTAAAAA TGCT AAA AGCA TTTTTTATTCTGTGT TERM 256 296272 - 296262 - R 71 -5.4 -4.62069 | opp_overlap 296262 TGTTGATTGTAAAAA TGCT AAA AGCA TTTTTTATTCTGTGT Hac_0348 296735 - 296277 - | hypothetical protein Hac_0349 296989 - 296726 - | hypothetical protein prtC 298307 - 297030 - | putative protease TERM 257 298342 - 298326 - R 79 -8 -4.07885 | TACTTGGCTCCAAAA GAAGCG ATCAA CGCTTC AATATCATCAGCACT Hac_0351 299038 - 298310 - | hypothetical protein prfB 300193 - 299102 - | peptide chain release factor 2 TERM 258 299192 - 299158 - G 71 -6.4 -4.18494 | opp_overlap 299169 TATCGCCATCTAAAA TCGCTTCCACATTGCT ATA AGCGATATTGGAGCGA GCGTCTTTGACTTGC TERM 259 299956 - 299972 + g 88 -6.6 -5.25735 | TCTCAAACAATTCTA CGCTTT CATCT AAAGCG TTTTTGGTTTTTTGA fliR 301021 - 300254 - | flagellar biosynthesis protein FliR TERM 260 300645 - 300655 + g 77 -6.8 -4.63527 | AATAAAAGGGCTTGC CCCA CAA TGGG TTTTTGCGCTCCTGA Hac_0354 301743 - 301015 - | hypothetical protein TERM 261 302044 - 302024 - g 86 -5.3 -5.6473 | opp_overlap 302024 ATAACAGCAAAAAAA CGACTGATG CTT CAGCAGGCG TGTTAGCAACAGTGG Hac_0356 301924 - 302820 + | peptidyl-prolyl cis-trans isomerase fba 302830 - 303753 + | fructose-bisphosphate aldolase efp 303775 - 304338 + | elongation factor P Hac_0360 304795 - 305928 + | DNA-cytosine methyltransferase TERM 262 306196 - 306184 - gf 73 -7.7 -3.74693 | CGTTAGTGGAGCAAA GTGGT ATT ACCAC CCTAAAGATAAAGAT Hac_0361 305915 - 306685 + | hypothetical protein Hac_0362 306660 - 308003 + | type II restriction enzyme Hac_0363 307996 - 309213 + | hypothetical protein Hac_0364 310321 - 309299 - | hypothetical protein Hac_0365 310965 - 310324 - | ABC transporter, ATP-binding protein cute 312239 - 310962 - | apolipoprotein N-acyltransferase TERM 263 312676 - 312688 + G 80 -2.7 -5.54885 | GAAATGAAACCATGA CTAAT CTC ATTGG TTTTTTATTGGTGTT TERM 264 312934 - 312904 - g 91 -7 -5.45652 | ACTTGCAAGAAAAAA GCGATATTTTTC CCACCAT GAAAAGTATCGC TAGCAAGATCATGCA TERM 265 313111 - 313097 - g 75 -4.2 -5.08255 | AGTTCTAAAAGAAAA GGCTAA AGA TTCGCC TAAAAACATGCTAGA Hac_0367 312483 - 313181 + | hypothetical protein TERM 266 314437 - 314419 - g 84 -7.5 -4.72007 | opp_overlap 314418 TTGCAGGAAAAGAAA TCGCTAA CGGCT TTAGCGA ATTGAATGACCCCTT lysS 313191 - 314696 + | lysyl-tRNA synthetase TERM 267 315734 - 315721 - g 83 -6.7 -5.07486 | CACTGTGAATAAAAA CACCA TTCC TGGTG AAACGCGTAGCCCTT glyA 314696 - 315946 + | serine hydroxymethyltransferase Hac_0370 315957 - 316499 + | hypothetical protein Hac_0371 316521 - 317321 + | hypothetical protein TERM 268 317360 - 317335 - f 78 -9.2 -3.5394 | opp_overlap 317335 AAAGGCTTTTGCAAA CTTAAAAGAG TTATCT CTCTTTTAAG TTTATTTTTTAAAAA TERM 269 317335 - 317360 + F 95 -9.2 -5.04249 | opp_overlap 317335 AAAGGCTTTTGCAAA CTTAAAAGAG TTATCT CTCTTTTAAG TTTATTTTTTAAAAA TERM 270 317791 - 317774 - g 76 -2.7 -5.37043 | ATCCTACACAAAAAA CCCTTAA CCAG TCAAGAG TCTTTATTAAAAAAA TERM 271 318290 - 318262 - g 73 -9.6 -3.02511 | CGGAGGGTTTGAAGA CTTGCCCATCAT CTTGC ATGACGGGCAGG TGATCGCGCCCAACC TERM 272 318577 - 318557 - g 72 -4.7 -4.82863 | opp_overlap 318557, overlap 318558 GAATTAGAAAAGAAA TTAGACGCT GAT AGCATCTAC TCATTAAAAAACATC TERM 273 318576 - 318558 - g 71 -8.2 -3.48091 | opp_overlap 318557, overlap 318557 AATTAGAAAAGAAAT TAGACGCT GAT AGCATCTA CTCATTAAAAAACAT Hac_0372 317639 - 319765 + | hypothetical protein Hac_0373 319821 - 320126 + | hypothetical protein Hac_0374 320132 - 320401 + | hypothetical protein TERM 274 320405 - 320439 + T 70 -8 -2.99704 | overlap 320404 AAAGGGCATTAAAAG GGTTTAGAGTTCTTTT TCA GGAAGGACTTTAGACC ATTCTTTAATCAAGC Hac_0375 321916 - 320408 - | phospholipase TERM 275 321670 - 321681 + g 75 -4.4 -5.1101 | TATAGATATAAGTTT GCAT ATCA ATGC TTTTTTGACTCATCC sdhB 322674 - 321937 - | fumarate reductase iron-sulfur subunit frdA 324811 - 322667 - | fumarate reductase flavoprotein subunit TERM 276 322916 - 322930 + g 70 -2.8 -5.0538 | TTCTTTTTTGGGGTG GGGAAT GAA ATTACC TTTTTTGCCATAGCC TERM 277 323699 - 323711 + g 74 -7.7 -3.93578 | overlap 323693 323693 GGACTCATTGGCGGG CATGC CTT GCATG TTGTCTTTAGTTTGC frdC 325588 - 324821 - | fumarate reductase cytochrome b-556 subunit TERM 278 325104 - 325088 - G 72 -5.9 -4.46854 | overlap 325083 ATACAAAAGCCAAAA GTTTTGC GTG ACAAAAC GATAGCTTGAGCCAT tpiA 325802 - 326506 + | triosephosphate isomerase TERM 279 327318 - 327299 - g 73 -3.7 -5.06414 | GCTGTGGAAGAAAAA GATAATA AAGCTG TATTATC ATGGGATTTGCATAA fabI 326516 - 327343 + | enoyl-(acyl carrier protein) reductase lpxD 327354 - 328364 + | UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase TERM 280 328745 - 328726 - g 76 -8.6 -3.73224 | opp_overlap 328719, overlap 328710 GCATTGGTGAGCAAA GCCCTGAT ATTA ATCAAGGC GTGGATAGAGAAGAT TERM 281 328905 - 328882 - g 71 -3.2 -5.0538 | overlap 328887 328892 CTCTAGCTCAAAAAA GAAAAGACAA CACC TTGCCTTTTT TAAGGCCTGATGGCA TERM 282 328900 - 328887 - g 78 -3.1 -5.42198 | overlap 328882 328892 GCTCAAAAAAGAAAA GACAA CACC TTGCC TTTTTTAAGGCCTGA metK 328425 - 329582 + | S-adenosylmethionine synthetase TERM 283 330027 - 330038 + G 70 -3 -5.03314 | opp_overlap 330027 GAAAACGCACACAAT GAAA TCGC TTTC TTTTTTGCCACTAGA ndk 329649 - 330062 + | hypothetical protein Hac_0384 330087 - 330443 + | hypothetical protein rpmF 330459 - 330605 + | 50S ribosomal protein L32 TERM 284 331144 - 331154 + G 73 -6.8 -4.2803 | opp_overlap 331142 331144 TATGGGGTATGAATA CGCT AAA AGCG TTTTAGGTTACGATA plsX 330668 - 331687 + | putative glycerol-3-phosphate acyltransferase PlsX TERM 285 332049 - 332061 + G 71 -3.3 -5.08878 | CGTTTGATATTTCAG CCGCT TGC ACCGG TTTTATTTATCTCTT fabH 331712 - 332707 + | 3-oxoacyl-(acyl carrier protein) synthase III Hac_0388 332730 - 333032 + | hypothetical protein TERM 286 333046 - 333036 - T 76 -5.4 -5.03945 | opp_overlap 333036 GAAGAACCATAAAAA CCAT AAA ATGG AATTTCTTTAACCAA fragment 333519 - 333304 - | - hypothetical protein fragment 335117 - 333714 - | - hypothetical protein TERM 287 334757 - 334769 + g 70 -4.7 -4.66609 | opp_overlap 334757 TATAAGCATAGATTA GTGCG TTT CGCTC TTTTTCAGTAAAGTC TERM 288 334992 - 335003 + g 71 -4.4 -4.83243 | ACTCTTACCAAGCAC CCTA ACGC TAGG TTTATTTTGTCTAGC TERM 289 335529 - 335550 + r 100 -11.7 -4.4267 | AAATGATTTTGATGT CTCTCTCTT TAAA AAGAGAGAG TTTTAAATTTTAGCG cah 336303 - 335560 - | hypothetical protein TERM 290 336195 - 336214 + g 75 -3.5 -5.3167 | AATCTTTATGCAATT TGTCCCA ATGGTG TGGGCCA TTTTCTTTGTTTTTG TERM 291 336448 - 336467 + H 90 -5.8 -5.5208 | overlap 336464 AACAATTTTAGGGGG TTTAATCG CAAG CGGTTAAA TTTTTTATCTTATAA TERM 292 336559 - 336574 + G 76 -3.9 -5.28983 | overlap 336553 CAATCGTATAAAAAA CTCGC CTTAAT GCGGG TTTTTGTGTTTTCAC Hac_0393 336529 - 337704 + | sugar efflux transporter TERM 293 339155 - 339142 - g 75 -2.3 -5.40004 | TATGAAATCAAAAAA GGGGT TTTC ACCAC TTACAAAGAGAAAAA Hac_0394 337807 - 339192 + | hypothetical protein napA 339217 - 340368 + | putative Na+/H+ antiporter TERM 294 340381 - 340363 - T 77 -3.9 -5.45652 | ATGCTCAACAAAAAA GCTTAAA GAAAG CTTAAGC ATCTAAATATTTAGC Hac_0396 341137 - 340376 - | hypothetical protein TERM 295 341091 - 341113 + g 85 -7 -5.07107 | TTGTAGGTGGCGTTT GTCTTGCCTA CAA TGTGCAAGAC TTTTTTAGAAATTTC Hac_0397 342544 - 341156 - | major facilitator family transporter TERM 296 341369 - 341357 - G 73 -2.6 -5.28176 | GTTATTGAGAAAAAA GAGC GATAA GCCC CAAACAAGCCCCAAG TERM 297 341857 - 341839 - G 71 -3.8 -4.93296 | opp_overlap 341842 341853, overlap 341842 341852 341853 GGATTAGCACAAAAA TAAGCGTC ATG AACGCTTT TTCAAAAAAAGAGCT TERM 298 341842 - 341854 + g 70 -4.8 -4.56597 | opp_overlap 341839 341842 341852 341853, overlap 341853 TTAGCACAAAAATAA GCGT CATGA ACGC TTTTTCAAAAAAAGA TERM 299 341854 - 341842 - G 72 -5.5 -4.56153 | opp_overlap 341842 341853, overlap 341839 341852 341853 TTAGCACAAAAATAA GCGTC ATG AACGC TTTTTCAAAAAAAGA nupC 342832 - 344088 + | pyrimidine nucleoside transport protein TERM 300 344422 - 344433 + G 72 -5.8 -4.44608 | opp_overlap 344422, overlap 344420 344426 344428 GGCATTGGGAGATGA TGGG TGCA CCCA TTCTTTTTGAATGGG TERM 301 344426 - 344452 + G 73 -7.3 -4.11216 | opp_overlap 344422, overlap 344422 344420 344428 TTGGGAGATGATGGG TGCACCCATTC TTTTT GAATGGGGGTA TTTTAAAGATAAAAA TERM 302 344428 - 344450 + G 70 -7.7 -3.65542 | opp_overlap 344422, overlap 344422 344420 344426 GGGAGATGATGGGTG CACCCATTC TTTTT GAATGGGGG TATTTTAAAGATAAA TERM 303 344486 - 344471 - g 70 -4.8 -4.67478 | opp_overlap 344471 TAAAGATAAAAACAA TTCTTT CCCT AAAGAA ATTTTAGATGAAATT TERM 304 345260 - 345277 + G 70 -2.7 -5.09426 | gap 1, overlap 345266 GACTTTTGCGGATAT TGGGCAGA GTA TC-GCTCA TTTTTTGGGATTAAG deoB 344100 - 345341 + | phosphopentomutase deoD 345338 - 346039 + | hypothetical protein TERM 305 346123 - 346099 - f 82 -7.9 -4.41895 | opp_overlap 346121, overlap 346086 AACTTTTAAGGAAAA CCCTTAAAGTT AAA AGCCTTAAGGG AGCTTTGGAAAAACT TERM 306 346794 - 346809 + G 75 -4.6 -5.10601 | overlap 346795 GCTTTAGGCATCGTA GCGCTC TCTG GAGCGA TTTTTGTGGTTTTGT TERM 307 346795 - 346808 + G 73 -8.1 -3.6392 | overlap 346794 CTTTAGGCATCGTAG CGCTC TCTG GAGCG ATTTTTGTGGTTTTG Hac_0401 346488 - 347795 + | hypothetical protein TERM 308 347791 - 347816 + F 72 -2.5 -5.41746 | overlap 347796 347797 CTGTATTCATTTTCC GTTAAGCTCTT TTTA AGGGGCTTTGC TTTTTTTACCCACTT TERM 309 349071 - 349091 + G 76 -2.5 -5.34632 | TTTGCTCTACGCTTA TAGCGTGCC GTT GTTATGCTA TTTTTATATTTTGTT fucP 347923 - 349146 + | glucose/galactose transporter TERM 310 349135 - 349160 + T 90 -4 -6.01725 | GGATATCAACAACAA GAAAACTCCT AAAAAA AGGGGGTTTC TTTTTTATTTTTCTT TERM 311 349397 - 349371 - T 88 -6.6 -5.1963 | opp_overlap 349371 349372, overlap 349372 CCTAACGAATAAAAA CCTCCTAGTCAT CAA AAGACTAAGAGA TTTTTAAGAATGAAG TERM 312 349396 - 349372 - T 73 -7.9 -3.70694 | opp_overlap 349371 349372, overlap 349371 CTAACGAATAAAAAC CTCCTAGTCAT CAA AAGACTAAGAG ATTTTTAAGAATGAA Hac_0404 349985 - 349425 - | hypothetical protein glnH 350919 - 350086 - | polar amino acid transport system substrate-binding protein TERM 313 350782 - 350759 - G 70 -6 -4.26188 | TCCACAGAGCCAAAA GGAGGTTTAT CGCT AAAAACCCCC ACTTTTAAAACCCCC glnQ 351715 - 350969 - | polar amino acid transport system ATP-binding protein glnP 352388 - 351717 - | polar amino acid transport system permease protein TERM 314 351807 - 351795 - G 73 -2.7 -5.22258 | TAAACTAAAATAAAA CATTA AGA TAACG CCATAAACCACAAAG glnP 353022 - 352390 - | polar amino acid transport system permease protein TERM 315 352451 - 352437 - G 71 -3.5 -5.03227 | overlap 352438 AGATCACAAATAAAA CGCTC AAAGG GAGCA AAACGATCAAATAAG TERM 316 353624 - 353640 + G 70 -5.1 -4.68424 | TTTAGGGGGTTGTGT GCATGAT TTT GTCGTGC TTTTTGCGTCCATTA TERM 317 354553 - 354565 + G 83 -9.1 -4.2237 | TTTTGAGCCGCACCG GTGGG GCA CCCAC TTTTGCGATTGGTTT cstA 353235 - 355298 + | carbon starvation protein A TERM 318 355307 - 355276 - T 73 -8.2 -3.53224 | gap 1, opp_overlap 355276 355304, overlap 355304 CACCGCTGGCTGAAA CCCCTTATATTAAAG CCA CTTGAATA-AAGGGG GTTTAAACCCCCTTA TERM 319 355276 - 355308 + T 76 -8.5 -3.54638 | opp_overlap 355276 355304, overlap 355304 CACCGCTGGCTGAAA CCCCTTATATTAAAG CCA CTTGAATAAAGGGGG TTTAAACCCCCTTAT TERM 320 355304 - 355319 + T 87 -10.4 -3.62224 | opp_overlap 355276 355304, overlap 355276 AGCCACTTGAATAAA GGGGGT TTAA ACCCCC TTATTGCAAACCTAT TERM 321 355319 - 355304 - T 95 -10.4 -4.18488 | opp_overlap 355276 355304, overlap 355276 AGCCACTTGAATAAA GGGGGT TTAA ACCCCC TTATTGCAAACCTAT TERM 322 355546 - 355522 - T 70 -8.1 -3.09516 | opp_overlap 355530 355531, overlap 355530 355531 TTCTTTACTATTCAA TAAAAAATGCT AAA AACATTTTTTA GATTTTAAAGATTAT TERM 323 355744 - 355722 - T 74 -7 -4.17608 | overlap 355720 355742 GGCATCTAAAAAACA CGCTACCATA TCA TAGAGTAGCG CTAGAAAGACGCATG hofH 357170 - 355848 - | hof family outer membrane protein TERM 324 355938 - 355924 - G 80 -10 -3.64371 | AATTTATACCCTAAA GAGAGC ATC GCTCTC GCCTCCCAAGAAACC nrdF 357791 - 358816 + | ribonucleotide-diphosphate reductase subunit beta TERM 325 359269 - 359296 + G 74 -9.9 -2.83639 | overlap 359268 TAGGATTTTATTCTC TGCTTGCGCGA CTACTA TCCCGCAAGCA CTTATTGATCAGCTT pcm 358826 - 359455 + | protein-L-isoaspartate O-methyltransferase Hac_0413 359442 - 360512 + | hypothetical protein TERM 326 360839 - 360827 - g 71 -3.3 -5.03314 | opp_overlap 360827 TTGACGCTCAAAAAA GAGCG TAT CGCTA CCTTTTAACTAAAAG truA 360514 - 361242 + | tRNA pseudouridine synthase A galE 362270 - 361236 - | hypothetical protein TERM 327 362624 - 362642 + r 82 -7.6 -4.37092 | ATGGATTGGATTTTG TATTGTTT AAA AAACAATA TTTTATAGCGGAACT fragment 362952 - 362704 - | thiol peroxidase fragment TERM 328 363179 - 363198 + H 72 -3.6 -5.2015 | TCTCTAACTTGGTAT GTTTCTTT TTTG AAAGTAAC TTTTTCTATTGTTGA TERM 329 363259 - 363277 + H 71 -7.6 -3.51557 | opp_overlap 363255 363259, overlap 363258 GTCAATTAAGATTAA CTTTTAAA AAT TTTAAAAG GTTTTGTTTGAAAAG TERM 330 363277 - 363259 - H 71 -7.6 -3.42147 | opp_overlap 363259 363258, overlap 363255 GTCAATTAAGATTAA CTTTTAAA AAT TTTAAAAG GTTTTGTTTGAAAAG sodB 363422 - 364069 + | hypothetical protein TERM 331 364084 - 364112 + F 82 -6.1 -5.10461 | opp_overlap 364084, overlap 364086 AGCACTATTTTAATA GGGTGGTTTAA AGCTTTA TTAAACCACGC TTTTTGTTCGATGAA TERM 332 364436 - 364423 - g 70 -2.5 -5.11112 | AAAGCGCAAGAAAAA TTAAA AGAT TTTAA AAATACCCATTTTGA Hac_0420 364123 - 364842 + | hypothetical protein priA 366707 - 364848 - | primosome assembly protein PriA TERM 333 365064 - 365078 + g 73 -2.8 -5.30199 | TTGAGAAGCTTTTAG GCTTAA TTG TTGGGC TTTTTCTTCGTTTTT Hac_0422 366928 - 366692 - | hypothetical protein Hac_0423 367168 - 366941 - | hypothetical protein TERM 334 368032 - 368018 - g 73 -4.3 -4.86621 | overlap 368022 AGGCTCAATGAAAAA GAGAT TTACG ATCTC AACTACGCGATCGTG TERM 335 368182 - 368210 + G 71 -9.6 -2.70932 | opp_overlap 368182 CGGAGGGTTTGAAGA CTTGCCCATCAT CTTGC ATGACGGGCAGG TGATTGCAGGCAACC TERM 336 368210 - 368182 - g 73 -9.6 -3.02511 | opp_overlap 368182 CGGAGGGTTTGAAGA CTTGCCCATCAT CTTGC ATGACGGGCAGG TGATTGCAGGCAACC Hac_0424 367325 - 369679 + | hypothetical protein Hac_0425 369745 - 370035 + | hypothetical protein TERM 337 370024 - 370035 + F 77 -3 -5.58209 | AACAAACGATTGTTA TCAA AACA TTGA TTTTTTTGAGTTTGA TERM 338 370405 - 370417 + G 79 -7.7 -4.3255 | AGCCTGAGAGCTATA TCCCT AGA AGGGA TTTATTCATTGAAAA uvrB 370104 - 372080 + | excinuclease ABC subunit B omp3 372910 - 372077 - | outer membrane protein 3 purB 374343 - 373021 - | adenylosuccinate lyase TERM 339 374099 - 374086 - G 76 -3.8 -5.32944 | GCCATAATGAAAAAA GCGA GACTCT TCGC CCAAGCTTTCAGCCA porB 375380 - 374436 - | pyruvate ferredoxin oxidoreductase, beta subunit TERM 340 374838 - 374852 + g 93 -3.6 -5.95449 | TCCGTGGCTTGCCAT GATATT GAC AATGTC TTTTTTCTTTTCTTT porA 376616 - 375393 - | pyruvate flavodoxin oxidoreductase subunit alpha TERM 341 375508 - 375491 - G 72 -5.5 -4.57569 | TGATTTCTTCAAAAA TCTCGCA TAAA TGCGCGA TCGTCATATCCCTTT porD 377018 - 376626 - | pyruvate flavodoxin oxidoreductase subunit delta porG 377594 - 377034 - | pyruvate flavodoxin oxidoreductase subunit gamma omp4 377858 - 378511 + | outer membrane protein 4 Hac_0435 379824 - 378514 - | hypothetical protein TERM 342 380153 - 380143 - g 81 -5.4 -5.19261 | opp_overlap 380143 AAAGCTAGTAAAAAA GTGT GTT ACAC TCTATACGCTTTAGT TERM 343 381266 - 381230 - g 95 -5.4 -5.78622 | gap 1, opp_overlap 381230, overlap 381240 GGATTGTAAAAAAAA TCTTAA-TCAAGCTCTT AAAA AAGAGCTAGAGTTAAAA GTCTTTAGTCAAACG Hac_0436 380002 - 381258 + | putative lipopolysaccharide biosynthesis protein TERM 344 381255 - 381240 - T 71 -7.6 -3.40743 | opp_overlap 381230, overlap 381230 AAAAATCTTAATCAA GCTCTT AAAA AAGAGC TAGAGTTAAAAGTCT adhA 382323 - 381271 - | NADP-dependent alcohol dehydrogenase glk 383640 - 382630 - | glucokinase pgl 384310 - 383627 - | 6-phosphogluconolactonase Hac_0441 385598 - 384321 - | glucose-6-phosphate 1-dehydrogenase edd 385661 - 387487 + | phosphogluconate dehydratase eda 387498 - 388142 + | 2-dehydro-3-deoxyphosphogluconate aldolase / 4-hydroxy-2-oxoglutarate aldolase TERM 345 388839 - 388811 - g 73 -3.7 -5.10077 | opp_overlap 388811 388812, overlap 388812 AAAGATTTGAAAAAA GCGCTCGCTTCGT ATG ATAAAGCGTGCGA TTTAAAAGACAGCCC Hac_0444 388235 - 389110 + | putative secreted protein Hac_0445 390748 - 389213 - | putative outer membrane protein TERM 346 391217 - 391207 - g 71 -4 -5.0133 | TACGCCTTTAAAAAA TCAT CAT ATGA TTACAAGTTTTGAAA TERM 347 391859 - 391831 - g 73 -9.6 -3.02511 | CGGAGGGTTTGAAGA CTTGCCCATCAT CTTGC ATGACGGGCAGG TGATCGCGCCCAACC Hac_0446 390884 - 391996 + | hypothetical protein TERM 348 392054 - 392025 - T 91 -12.3 -3.56643 | opp_overlap 392025 392024, overlap 392042 TGCAGAGTTTTTAAA CTCCCTTAAGGAA AATA TCCCTTAAGGAAG CGTTTTTTCTAAAAG ureC 393772 - 392063 - | urease subunit alpha ureAB 394466 - 393783 - | bifunctional urease subunit gamma/beta TERM 349 394445 - 394431 - G 70 -7.2 -3.7511 | opp_overlap 394431 394430 TCCTGCATAATACAA CAAGAA TTT TTCTTG CTCTTTGGGAGTTAA TERM 350 394620 - 394606 - R 74 -6.4 -4.46835 | ATAATCCTAAAGAAA CCCCTA AAA TAGGAG ACTAATCGTTTTTAA TERM 351 394740 - 394753 + r 80 -5.3 -5.25656 | opp_overlap 394740 AAAAGAAAAAGAAAC GATTG AGTG CAATC TTTTTTGATAATTTT cheW 395386 - 394889 - | chemotaxis protein CheW TERM 352 395182 - 395202 + g 74 -9 -3.54741 | opp_overlap 395182 395180 395175 CCCTTAAATTGAACA CGCCAAGC ACATA GTTTGGCG TTTCAGGAACTCGTG cheA 397806 - 395383 - | histidine kinase TERM 353 396587 - 396599 + g 79 -4.1 -5.47159 | overlap 396578 ACTTTACCGGTTTCA GGTTT GTT AAGCC TTTTTCTTTCTTCCA TERM 354 396993 - 396954 - G 73 -6.6 -4.21812 | gap 1, opp_overlap 396969 TTTTACCTAAAACAA GCTCACCAATTAGATTCAT CAA ATGA-TCTAATCGGCGCAC ATCCACCCTAACGGT TERM 355 397374 - 397388 + g 70 -7.2 -3.73402 | CTTGTTGGGGGGCTT CTTTAG TTC CTAAAG TTTCCTGAGCGCTCT TERM 356 397556 - 397575 + g 80 -7.8 -4.37658 | opp_overlap 397556 ACATCCATAATATCA GGCGTGAT CTTG ATCTCGCC TTTTCTGGCACGATT cheV 398800 - 397862 - | chemotaxis protein CheV Hac_0452 399565 - 398804 - | hypothetical protein TERM 357 399610 - 399586 - R 100 -7.9 -5.63517 | overlap 399602 399605 TCTTTAAACAAAAAA GAGCCAATCCT TAA AAGATTTGCTC CGCAAGCAATCGCTA Hac_0453 400235 - 399567 - | hypothetical protein Hac_0454 402095 - 400245 - | 3-octaprenyl-4-hydroxybenzoate carboxy-lyase serA 403672 - 402098 - | D-3-phosphoglycerate dehydrogenase TERM 358 403549 - 403568 + g 74 -5.8 -4.60924 | opp_overlap 403549 403564, overlap 403564 GTGCATCCATAGGAA TGAGTTTT TCTA AAAGCTCA TTTTTAGAGCATTTG Hac_0456 404200 - 403688 - | hypothetical protein rpsA 405887 - 404229 - | 30S ribosomal protein S1 TERM 359 405258 - 405245 - G 72 -5.2 -4.83615 | overlap 405253 405254 TAGCTTCTACAAAAA CGCC AAAAGG GGCG ATCTGCCGCACAATC TERM 360 405792 - 405818 + g 73 -4.3 -4.86033 | opp_overlap 405784, overlap 405795 405798 GATTAACCCTTCTTT GATGGTGCCCT TTTCT AGGGCTTCTTC TTTTTCTAAAAGTTT TERM 361 405798 - 405812 + g 78 -7.1 -4.36508 | overlap 405795 405792 CCCTTCTTTGATGGT GCCCT TTTCT AGGGC TTCTTCTTTTTCTAA ispH 406817 - 406005 - | 4-hydroxy-3-methylbut-2-enyl diphosphate reductase TERM 362 406670 - 406689 + g 82 -5.1 -5.40072 | TTTTTTTAGGATCTT CTTCAAT TTTCAC ATTGAAG TTTTTTTCCAAACGA aroA 408108 - 406819 - | 3-phosphoshikimate 1-carboxyvinyltransferase TERM 363 407829 - 407817 - G 76 -2.6 -5.48213 | overlap 407811 CACTTAAAACAAAAA GCCC TTTTT GAGC GCTTAAAAGCCCACT pheT 410415 - 408124 - | phenylalanyl-tRNA synthetase subunit beta TERM 364 408294 - 408316 + g 70 -7.8 -3.68674 | CAAGGGGTAGAATTT CGCTTAAATT AGG GATTTGAGCG TCTTTTAGAGCTTTT TERM 365 410229 - 410245 + g 79 -6.5 -4.83169 | opp_overlap 410229 TATCCACTTGACACA CGCTGAG TTT TTCGGCG TTTTTATGAGAGGCT pheS 411401 - 410415 - | phenylalanyl-tRNA synthetase subunit alpha TERM 366 410457 - 410441 - G 72 -9.5 -2.76315 | overlap 410440 410443 CCAACACCCTTAAAT CAGTTTC AAA GAAACTG CGTAAATCATTGATT ycfF 411482 - 411796 + | HIT-family protein Hac_0463 411815 - 413137 + | putative aminotransferase Hac_0464 413163 - 413753 + | hypothetical protein TERM 367 413800 - 413789 - f 77 -4.4 -5.28315 | opp_overlap 413789 ATAAAATTTAAAAAA TGCT TTTG AGCA TTTTTGCAACAAACA TERM 368 413842 - 413826 - f 79 -8 -4.07559 | AAACATAATAAAAGA GCTTGC GAAAA GCAAGC GATAATCTCTTAAAA Hac_0465 414083 - 414562 + | hypothetical protein TERM 369 414707 - 414696 - g 93 -3.6 -5.85178 | AACATCCAAAAAAAA GCCC CTAA AGGC TTGATTTTGAGTGGG TERM 370 415088 - 415113 + G 83 -7.7 -4.62475 | TCAAAGCGAAGAGGG GGGAAAAATTT TAGA AAATTTTGCCC TTTTAGTTTGTGGCT guaA 414573 - 416099 + | bifunctional GMP synthase/glutamine amidotransferase protein hpaA 416178 - 416927 + | neuraminyllactose-binding hemagglutinin TERM 371 416957 - 416975 + F 85 -6.6 -5.0133 | TTAAAATCATTTAGA GCCGCTTT TAA ATGGCGGC TTTTTTAAAAGCGTG TERM 372 417641 - 417654 + F 80 -5.3 -5.14894 | TGTTTTTCTTGTAGG CATAG GATA CTATG TTTTTATGGTTTTTT Hac_0471 418498 - 419004 + | hypothetical protein Hac_0472 419723 - 419193 - | hypothetical protein Hac_0473 419925 - 421148 + | putative integral membrane zinc-metalloprotease hemK 421145 - 421975 + | protoporphyrinogen oxidase TERM 373 422002 - 421986 - f 82 -9.5 -3.67823 | overlap 421984 GATAAATGATAAAGA GCTTGAT TTA ATCAAGC GATAGCTGAGTTTGA TERM 374 423035 - 423015 - g 88 -6.8 -5.24531 | overlap 423026 ACGCTTTAGAAAAAA CAAGCGCG AAATA CACGCCTG TAGAAAACTACCCCA gdhA 422135 - 423481 + | glutamate dehydrogenase TERM 375 423593 - 423571 - T 100 -13.6 -3.53343 | opp_overlap 423560 423559, overlap 423591 423592 AAGGCGTTTTTTAAA GGGTGTTTTA CTA TAAAACACCC CCTAAAAGGAGAGTT fragment 424257 - 423610 - | COG1479S hypothetical protein fragment 424407 - 424282 - | - hypothetical protein fragment 424818 - 424432 - | COG1479S hypothetical protein fragment 424930 - 424799 - | COG1479S hypothetical protein fucT 426219 - 424990 - | - COG1511S alpha (1,3)-fucosyltransferase fragment 3 TERM 376 425650 - 425616 - GR 74 -7.4 -4.09685 | overlap 425617 TGTCATTTTCTAAAA TCGTTTTAAAAAAATC TAA GATTTTTTTAAAACTC AAATCTTGGTAAAAA TERM 377 425649 - 425617 - GR 84 -10.9 -3.05597 | overlap 425616 GTCATTTTCTAAAAT CGTTTTAAAAAAATC TAA GATTTTTTTAAAACT CAAATCTTGGTAAAA fucT 426361 - 426191 - | - - alpha (1,3)-fucosyltransferase fragment 2 fucT 426622 - 426374 - | - - alpha (1,3)-fucosyltransferase fragment 1 TERM 378 426684 - 426716 + r 84 -3.7 -5.75342 | opp_overlap 426671 426667 ACTTTATCTTTAATT TTTAAAAACAAAT TGTGGTT ATTTGATTTTAAA TTTTTTTTAAGAAAC serB 427410 - 426787 - | hypothetical protein pfr 427929 - 427426 - | ferritin fucT 428485 - 428117 - | - - alpha-1,3/4-fucosyltransferase N-terminal fragment TERM 379 428358 - 428370 + g 70 -2.7 -5.0666 | TGCAAGATGAAACGC CTAAA CCC TTTGG TTTCTTTTTTGCCTA ycf5 431305 - 428495 - | cytochrome c biogenesis protein TERM 380 429719 - 429697 - G 72 -5.6 -4.60041 | overlap 429687 ATTGAGCGCTAAAAA GCGTATAAAC TAA ATTGATACGC TCATCCACTTTTAAG TERM 381 430174 - 430188 + g 71 -6.4 -4.08767 | TTTCTACATCTTGGT GCTCTA TTT TAGGGC TTTTGCCCCCATGCG dsbC 431989 - 431315 - | disulfide interchange protein hemH 433089 - 432073 - | ferrochelatase Hac_0491 433155 - 433574 + | hypothetical protein Hac_0492 433575 - 434255 + | hypothetical protein Hac_0493 434930 - 434373 - | hypothetical protein TERM 382 434773 - 434785 + g 70 -4.8 -4.64144 | ATCACTTCATCTATA GCGT TAAGC ACGC TTTTTAAAAATTCTT Hac_0494 435892 - 434930 - | putative type II DNA modification enzyme (methyltransferase) TERM 383 435912 - 435900 - R 72 -3.5 -5.14563 | GTTTGCATGAAAAAA TTTTA CTA TAAAA CGACAAAACCTAATG dcd 436538 - 435972 - | deoxycytidine triphosphate deaminase accB 436662 - 437135 + | acetyl-CoA carboxylase biotin carboxyl carrier protein TERM 384 438233 - 438212 - g 80 -5.9 -5.09173 | GAAGATCCTAAAAAA TTCTACCCA AGCC CGGGTAAAA TCACTGAATGGATCG accC 437141 - 438508 + | biotin carboxylase Hac_0498 438530 - 438949 + | hypothetical protein TERM 385 439261 - 439250 - g 77 -5.8 -4.75063 | opp_overlap 439250 439259 ATAAAATTTTAAAAA CGCA TTAT TGCG TGCATTTGCACCCTT Hac_0499 438931 - 439464 + | hypothetical protein Hac_0500 439482 - 439652 + | hypothetical protein TERM 386 439870 - 439854 - T 100 -12.3 -3.87641 | AATATCCCCCATAAA CCCATGC CAA GCATGGG TTAGAGAAGCGATCA vacA 440122 - 439904 - | Hac_0502 - - vacuolating cytotoxin fragment 13 vacA 440343 - 440209 - | Hac_0503 - - vacuolating cytotoxin fragment 12 vacA 440568 - 440368 - | Hac_0504 - - vacuolating cytotoxin fragment 11 vacA 440856 - 440584 - | Hac_0505 - - vacuolating cytotoxin fragment 10 vacA 441049 - 440927 - | Hac_0506 - - vacuolating cytotoxin fragment 9 TERM 387 441144 - 441177 + r 77 -8.9 -3.25162 | opp_overlap 441144 441162, overlap 441142 441140 TTGCGTTTGACCAAA GGAGCGTTTTTTATG AGAG CGTAGGAAACGCGCC TGTCTGTTGTTTGTG vacA 441515 - 441195 - | Hac_0507 - - vacuolating cytotoxin fragment 8 vacA 442062 - 441532 - | Hac_0508 - - vacuolating cytotoxin fragment 7 vacA 442544 - 442266 - | Hac_0510 - - vacuolating cytotoxin fragment 6 TERM 388 442436 - 442462 + g 70 -8.8 -3.0644 | CACCCACTTCTTTAT TCACCCTTAATG CCC CATTAACGGTGG TATTCCCGGTTAGAT vacA 442829 - 442614 - | Hac_0511 - - vacuolating cytotoxin fragment 5 vacA 442958 - 442842 - | Hac_0512 - - vacuolating cytotoxin fragment 4 vacA 443192 - 442980 - | Hac_0513 - - vacuolating cytotoxin fragment 3 vacA 443457 - 443167 - | Hac_0514 - - vacuolating cytotoxin fragment 2 vacA 443718 - 443524 - | Hac_0515 - - vacuolating cytotoxin fragment 1 TERM 389 444544 - 444530 - g 72 -5.8 -4.38092 | opp_overlap 444536 444536 444539, overlap 444537 TAATAATGAAAAGAA TCAAAA CGA TTTTGA ACATTTTAAAATCCG Hac_0517 444255 - 444863 + | hypothetical protein TERM 390 445621 - 445595 - g 85 -7.4 -5.05782 | overlap 445596 AGCCAGCTTAAAAAA GTCTCTCTTTTG ATG CAAAAAAGAGAA GAAATCGCTCTAGTT TERM 391 445620 - 445596 - g 83 -10.9 -3.62746 | overlap 445595 GCCAGCTTAAAAAAG TCTCTCTTTTG ATG CAAAAAAGAGA AGAAATCGCTCTAGT Hac_0518 444860 - 445984 + | sugar nucleotide biosynthesis TERM 392 446075 - 446092 + G 73 -2.7 -5.24129 | GAGAACAGCCTGAGC CTTACAA ATTT TTGCAAG TTTTTTATACGCAAG TERM 393 446463 - 446479 + G 78 -10.9 -2.78867 | opp_overlap 446463, overlap 446462 AAATTCGTTTAGAGA GCGTTTC ACA GAAACGC CTTATTGGAAATTAA TERM 394 446479 - 446463 - g 78 -10.9 -2.8806 | opp_overlap 446463 446462 AAATTCGTTTAGAGA GCGTTTC ACA GAAACGC CTTATTGGAAATTAA mjaVIP 445987 - 446709 + | endonuclease MjaVIP TERM 395 446770 - 446782 + G 70 -2.7 -5.06735 | opp_overlap 446770, overlap 446764 446770 CGAGCGTTTTAGAGA CTTTT GAA AAAGG TTTTTATGATTTGTG hpaim 446706 - 447464 + | adenine specific DNA methyltransferase TERM 396 447838 - 447822 - g 86 -10.9 -4.13343 | AGAAAGTTTTGAAAA CGCTCAA GGC TTGAGCG CTAAAATGGGCGATT TERM 397 448151 - 448131 - g 100 -2.5 -6.01725 | overlap 448134 AAGAAAAACAAAAAA TAACCCTAT TTT ATTGGGTGA GCCTGGAGTGGGGAA TERM 398 448148 - 448134 - g 73 -4.2 -4.97159 | overlap 448131 AAAAACAAAAAATAA CCCTAT TTT ATTGGG TGAGCCTGGAGTGGG TERM 399 448916 - 448895 - g 84 -2.4 -5.72254 | TGAAAGAAGAAAAAA TCAAATTA GAAGTG CAATTTGA AAATGAAAAAGAAGT TERM 400 449279 - 449263 - g 75 -4.3 -5.06414 | overlap 449264 449276 GTGGGGCAAGAAAAA GCGCTCA AAG CGATCGC TAAAGCGATTAAAAG clpB 447538 - 450108 + | ATP-dependent Clp protease, ATP-binding subunit ClpB TERM 401 450329 - 450343 + G 74 -5 -4.86001 | overlap 450342 TTAAAGATGGTAAGG CTGAAA GGG TTTCGG TTTTTCTAAAATCCT TERM 402 450464 - 450475 + G 71 -4.4 -4.75776 | ATTATATCGCCGGGG GGAT TGTG ATCC TTTTTGGGTTGCATT ccdA 450166 - 450885 + | cytochrome c-type biogenesis protein ccdA pyrC 450895 - 452028 + | dihydroorotase TERM 403 452509 - 452496 - g 73 -2.5 -5.24129 | GCGTTTGAGAAAAAA TTTAA GGAG TTAAA AAATTTAGAAGATGA Hac_0525 452016 - 453242 + | chlorohydrolase TERM 404 453297 - 453287 - f 80 -5.4 -5.27938 | opp_overlap 453287 453292, overlap 453281 AGTTCTAAATAAAAA TGCT TTT AGCA TTTTTTAAAATAAAA TERM 405 453287 - 453297 + F 76 -5.4 -5.0538 | opp_overlap 453287 453281, overlap 453292 AGTTCTAAATAAAAA TGCT TTT AGCA TTTTTTAAAATAAAA Hac_0526 453381 - 453623 + | hypothetical protein TERM 406 454098 - 454086 - g 75 -3.4 -5.24129 | opp_overlap 454086 GGTTGCGATAAAAAA TGCA CTTAT TGCA TTGTCCCGCACACTA Hac_0527 453666 - 454949 + | hypothetical protein Hac_0528 454985 - 455632 + | hypothetical protein TERM 407 456019 - 456031 + G 88 -3.4 -5.79595 | opp_overlap 455999 456019 TTAAGCGTTTTAAAG TCCA GGATG TGGA TTTTTTGTTTTCGCC TERM 408 456407 - 456391 - g 70 -8.1 -3.33315 | opp_overlap 456392 456398 CGAATATCCCCATAA TTGCAAA CGC TTTGCAA GAAGGCTTGTGCAGT Hac_0529 455625 - 456608 + | hypothetical protein TERM 409 456983 - 456967 - g 74 -8.7 -3.58343 | opp_overlap 456967 456975 GTGATTAGCGGTAAA GCCCCTT CTA AAGAGGC TTTTTATTTTTTATT TERM 410 456967 - 456983 + G 100 -6.5 -5.84011 | opp_overlap 456967, overlap 456975 GTGATTAGCGGTAAA GCCCCTT CTA AAGAGGC TTTTTATTTTTTATT TERM 411 456975 - 456989 + G 75 -2.2 -5.4505 | opp_overlap 456967, overlap 456967 CGGTAAAGCCCCTTC TAAAGA GGC TTTTTA TTTTTTATTCCAAAA Hac_0530 456598 - 457119 + | hypothetical protein TERM 412 457296 - 457284 - g 91 -3.4 -5.95166 | TGGAATTAAAAAAAA TCCT TTTAG AGGA AAACCGCAAAAAAAG TERM 413 457326 - 457311 - g 81 -3.2 -5.51165 | AAAACCGCAAAAAAA GCGTTT TAGA ATACGC GCAAAGGCATTTTGA Hac_0531 457139 - 457669 + | hypothetical protein Hac_0532 457678 - 458076 + | hypothetical protein addB 458113 - 459408 + | ATP-dependent nuclease trpC 459396 - 459953 + | indole-3-glycerol phosphate synthase fdx 460009 - 460260 + | hypothetical protein ppx 460271 - 461725 + | hypothetical protein TERM 414 462688 - 462703 + G 75 -7.6 -4.19276 | AATATAGAGCCTGAA CGCATT AAAG AATGCG TTTTAAACCTTTTAA rfaC 461722 - 462732 + | lipopolysaccharide heptosyltransferase-1 TERM 415 462799 - 462813 + G 73 -4.2 -4.91511 | GTTTTAAAACAGAGT TGCGCA TTT TGAGCA TTTTTATCGTGGAAT Hac_0538 462729 - 463715 + | lipid A biosynthesis lauroyl acyltransferase TERM 416 463766 - 463738 - T 90 -9.1 -4.54821 | opp_overlap 463747, overlap 463740 463747 AGTGGAATGATAAAA TTTAAAAAATGCT GAA AGCATTTTTTATA ATCACATGCTAAAGA TERM 417 463764 - 463740 - T 87 -11.7 -2.5882 | opp_overlap 463747, overlap 463738 463747 TGGAATGATAAAATT TAAAAAATGCT GAA AGCATTTTTTA TAATCACATGCTAAA TERM 418 463757 - 463747 - T 80 -5.4 -5.28315 | opp_overlap 463747, overlap 463740 463738 ATAAAATTTAAAAAA TGCT GAA AGCA TTTTTTATAATCACA TERM 419 463747 - 463757 + T 80 -5.4 -5.31275 | opp_overlap 463740 463738 463747 ATAAAATTTAAAAAA TGCT GAA AGCA TTTTTTATAATCACA tgt 465095 - 463980 - | queuine tRNA-ribosyltransferase TERM 420 464098 - 464086 - G 75 -3.4 -5.27938 | AGCTCTAAATAAAAA TGCA GATTG TGCA AGCTCGCTAAACGAG TERM 421 464750 - 464774 + g 76 -8.7 -3.70919 | opp_overlap 464750, overlap 464741 GCTTGCTCCCATCAA GATGGGATT TAAAAAC AATCCCATC TTCTTGCAATTTAAC TERM 422 464774 - 464750 - G 70 -8.7 -3.14132 | opp_overlap 464741 464750 GCTTGCTCCCATCAA GATGGGATT TAAAAAC AATCCCATC TTCTTGCAATTTAAC TERM 423 465703 - 465715 + G 83 -4.1 -5.52384 | AAAATCGTAGGGCTT TATCG CAA CGATG TTTTTTTACTCGCCA Hac_0542 465151 - 466587 + | hypothetical protein TERM 424 466692 - 466676 - g 88 -6.5 -5.33026 | overlap 466677 GAATTGAAACAAAAA GCGCTCA TTG TGAGCGA TAGCATTGTGGCTGG TERM 425 466691 - 466677 - g 81 -10 -3.78189 | overlap 466676 AATTGAAACAAAAAG CGCTCA TTG TGAGCG ATAGCATTGTGGCTG TERM 426 467090 - 467076 - g 72 -5.7 -4.57073 | TAGCTTTTTTAAAAA CCCTT GAAAA AAGGG AATTCCAAGCAGGGG aroB 466592 - 467623 + | 3-dehydroquinate synthase TERM 427 467991 - 468007 + G 70 -5.1 -4.56702 | TATCGCCAACCCTAT TGCGATC ATT GATGGCA TTTCTTTCATTAAAA TERM 428 468432 - 468444 + G 73 -2.7 -5.22768 | TGTGAATGTGAGCGT GATTG TTT TAATC TTTCTTTTTTCTTAT Hac_0544 467629 - 469170 + | hypothetical protein TERM 429 469483 - 469504 + G 75 -4.5 -5.1675 | opp_overlap 469483 469494 AAGAAAAGATCAATA CGCTTTT ACAAGAAA AAAAGCG TTTTTTCATAGATGA TERM 430 469818 - 469797 - g 75 -4.5 -5.17353 | AGATTGATTAAAAAA TTAAGCCAA ATTG TTGGATTAA AACGCATCAGAATTG Hac_0545 469176 - 470432 + | hypothetical protein TERM 431 471548 - 471536 - g 74 -7.7 -4.00348 | CTTTAATCAATGAAA GCGTT CTA AACGC CCTAAAACACCAACG ftsH 470419 - 472071 + | cell division protein FtsH3 TERM 432 472359 - 472373 + G 73 -7.1 -4.08767 | AGCAGTGGGTTTGGA CGCTC AATTA GAGCG TTTTAAAAAAATGGG Hac_0547 472075 - 472593 + | hypothetical protein TERM 433 472836 - 472848 + G 70 -4.9 -4.53602 | TATAGTGTTACTTTA TGAAA TCA TTTCA TTTATTTACTCTAAA Hac_0548 472606 - 473091 + | hypothetical protein TERM 434 480465 - 480490 + G 70 -4.7 -4.63932 | opp_overlap 480459, overlap 480467 AGAGGAAAACAACGG CGTGTTGACTT ATTT AGGTCAACGGG TTTTATTGCAAGATA TERM 435 480927 - 480913 - g 70 -8.6 -3.1355 | opp_overlap 480923 GCGAGCTACACCCAA CAAACG AGC CGTTTG ACCAAACTCTCTGAT vacA 473155 - 481887 + | putative vacuolating cytotoxin (VacA) paralog lysA 481935 - 483152 + | hypothetical protein Hac_0551 483157 - 483441 + | hypothetical protein Hac_0552 483454 - 484326 + | hypothetical protein TERM 436 484754 - 484767 + G 75 -8.1 -3.86897 | opp_overlap 484752 484754, overlap 484738 CGTGCAACCAAAACA CGCCT TTTA AGGCG TTTATAGAAAATGAG TERM 437 484767 - 484754 - g 75 -8.1 -3.8125 | opp_overlap 484738 484754, overlap 484752 CGTGCAACCAAAACA CGCCT TTTA AGGCG TTTATAGAAAATGAG TERM 438 485215 - 485203 - g 74 -4.7 -4.97402 | opp_overlap 485203 485203 GAAAACTTAGAAAAA CGCCC TAG GGGGG TGTATTGCGGAGCGA TERM 439 485886 - 485921 + G 73 -8.4 -3.6715 | gap 1, opp_overlap 485901 TGGGACAGGTGTGAT GGGGC-TGTTAAAAAAG GGT CTTGTTGAACATGCCCC TTTAAAATTACATGA TERM 440 485921 - 485901 - g 76 -5.3 -5.00616 | opp_overlap 485886 GGGGCTGTTAAAAAA GGGTCTTGT TGA ACATGCCCC TTTAAAATTACATGA pabB 484327 - 486018 + | para-aminobenzoate synthetase component I amiE 486213 - 487232 + | acylamide amidohydrolase flgL 489795 - 487312 - | flagellar hook-associated protein FlgL TERM 441 487505 - 487526 + g 82 -5.1 -5.43414 | TCAAACGCCTTACCA TGAGTGCCA TTTT TGGCGATCA TTTTTTCTATGTGAT rplU 490041 - 490355 + | 50S ribosomal protein L21 rpmA 490369 - 490635 + | 50S ribosomal protein L27 TERM 442 492239 - 492225 - g 74 -5.7 -4.8048 | opp_overlap 492227, overlap 492227 GTTTCAGATCAAAAA GAGAG AGAAG CTCTC TACTTAAAAGCTCAA TERM 443 492239 - 492227 - g 74 -7.7 -4.02302 | opp_overlap 492227, overlap 492225 TTCAGATCAAAAAGA GAGAG AAG CTCTC TACTTAAAAGCTCAA dppA 490752 - 492392 + | dipeptide transport system substrate-binding protein TERM 444 492815 - 492832 + G 70 -7.7 -3.69216 | overlap 492813 TGACTTTCGCTTTAG CCGGTAT TTCT ATGCCGG TGTTTTGGCTAGGGC dppB 492403 - 493407 + | dipeptide transport system permease protein dppC 493407 - 494264 + | dipeptide transport system permease protein dppD 494275 - 495138 + | dipeptide transport system ATP-binding protein dppF 495135 - 495941 + | dipeptide transport system ATP-binding protein TERM 445 496762 - 496773 + G 70 -5.8 -4.20042 | ATTTTCACCCGCTTT GGCT AACA AGCC TTTTGGGGTGTTGCT obgE 495956 - 497038 + | GTPase ObgE Hac_0565 497080 - 498075 + | hypothetical protein TERM 446 498165 - 498179 + F 74 -8.6 -3.23733 | opp_overlap 498164, overlap 498149 498164 CCTTGTTTCAGCAAG GGCTTT TAA AAAGCC GTTTTGTAACCTGCA TERM 447 498391 - 498411 + F 76 -6.1 -4.60924 | opp_overlap 498410 GCATGAGAGTATTTT GGGTTAGCG TTT TGCTAAACC TTTTTAAAAAGTTTC TERM 448 498541 - 498518 - f 80 -9 -3.63627 | TTGTGATACGCTAAA GCTATTGTCA GAAA TAACAATAGC CTATCAAAAAAACGG TERM 449 499562 - 499547 - f 72 -9 -2.71912 | opp_overlap 499545 499541, overlap 499546 TGACATTGAGAGAAT CCGCTA GAAA TAGCGG GGTGTCTGGCTTGCC TERM 450 500048 - 500065 + F 74 -9.1 -3.07291 | opp_overlap 500048, overlap 500050 500053 GTCGTAACAAGGTAA CCGTAGG TGAA CCTGCGG TTGGATCACCTCCTT Hac_0567 500460 - 500654 + | hypothetical protein TERM 451 500707 - 500694 - f 100 -2.3 -7.07835 | CAAAAAAAAAAAAAA CGACG CATG CACCG CTCAAAATCGTTGCA omp5 500799 - 502844 + | outer membrane protein 5 TERM 452 502855 - 502869 + F 77 -7.8 -4.14615 | ATTAAAGTGGTTTAA CTCCCT TCA AGGGGG TTTTAGGCGCTTTTT Hac_0571 503002 - 504285 + | hypothetical protein TERM 453 505796 - 505786 - g 73 -4 -5.06414 | GCCTTTTAACAAAAA TTGA TAA TCAA CTTAAGGGGTTATAT Hac_0572 504345 - 506780 + | hypothetical protein TERM 454 507559 - 507546 - g 75 -2.3 -5.50313 | TAGAAAATGAAAAAA GCCAT AGAG AGGGC GAGATTTTAAGAATT fmt 506795 - 507712 + | methionyl-tRNA formyltransferase birA 507709 - 508347 + | biotin--protein ligase parA 508350 - 509144 + | partition protein, ParA-like protein parB 509147 - 510016 + | chromosome partitioning protein parB atpF' 510131 - 510565 + | F0F1 ATP synthase subunit B' atpF 510569 - 511084 + | F0F1 ATP synthase subunit B atpH 511085 - 511627 + | F0F1 ATP synthase subunit delta atpA 511650 - 513161 + | F0F1 ATP synthase subunit alpha TERM 455 513984 - 514001 + G 73 -7.1 -4.1822 | ATAACGCTAAGGATT TGGTTAA AAAT TTAACCA TTTCTTACAATAAAG atpG 513176 - 514081 + | F0F1 ATP synthase subunit gamma atpD 514109 - 515509 + | F0F1 ATP synthase subunit beta atpC 515519 - 515890 + | F0F1 ATP synthase subunit epsilon exbB 515900 - 516490 + | biopolymer transport protein exbD 516519 - 516920 + | hypothetical protein Hac_0586 516939 - 517721 + | hypothetical protein tolB 517718 - 518971 + | translocation protein TolB pal 519050 - 519595 + | peptidoglycan-associated lipoprotein precursor Hac_0589 519603 - 520595 + | hypothetical protein TERM 456 520784 - 520804 + G 72 -7.5 -3.86194 | AAGAGGTTGTTATTA CCCCAGAGG AAG CTTATGGGG TTTATGAAAGCGGTT slyD 520582 - 521136 + | peptidyl-prolyl cis-trans isomerase, FKBP-type Hac_0591 521165 - 521371 + | hypothetical protein flgM 521438 - 521641 + | FlgM protein BSP6IM 521790 - 522737 + | C-5 cytosine-specific DNA methylase TERM 457 523154 - 523167 + G 81 -4.5 -5.40072 | opp_overlap 523154 TTTTTTAAACCAAAT GCGAG AATC CTTGC TTTTTTTGAAAGAAA Hac_0596 522888 - 523322 + | hypothetical protein flgK 523324 - 525144 + | flagellar hook-associated protein FlgK TERM 458 525188 - 525159 - f 85 -8.1 -4.38154 | opp_overlap 525147 525160 525168, overlap 525147 525161 525168 ATATTTTTTATAAAA TTTAAAAAATGCT TTTT AGCATTTTTTACA ACAAATACAAAAGAG TERM 459 525186 - 525161 - f 79 -10.7 -2.53125 | opp_overlap 525147 525160 525168, overlap 525147 525159 525168 ATTTTTTATAAAATT TAAAAAATGCT TTTT AGCATTTTTTA CAACAAATACAAAAG TERM 460 525179 - 525168 - f 77 -4.4 -5.28315 | opp_overlap 525160 525168, overlap 525161 525159 ATAAAATTTAAAAAA TGCT TTTT AGCA TTTTTTACAACAAAT TERM 461 525168 - 525179 + F 73 -4.4 -5.00884 | opp_overlap 525168 525161 525159, overlap 525160 ATAAAATTTAAAAAA TGCT TTTT AGCA TTTTTTACAACAAAT TERM 462 525550 - 525564 + G 74 -8.6 -3.64703 | GATAGCATTCTCTTT GGGTTT GTT AAACCC TTTGAGTGCAGCGAG ggt 525497 - 527200 + | hypothetical protein Hac_0600 527458 - 528234 + | hypothetical protein Hac_0603 528705 - 530573 + | hypothetical protein cfa 531745 - 530576 - | cyclopropane-fatty-acyl-phospholipid synthase TERM 463 531071 - 531059 - G 74 -9.1 -3.54741 | CACCACCTTGTCAAA GCGGT ATA ACCGC CCATCTAAATCCTGG TERM 464 532495 - 532505 + G 72 -5.4 -4.63218 | opp_overlap 532495 ATTTATCGTAAAAAT GAAG TCA CTTC TTTTATTGAACAAGG TERM 465 533264 - 533295 + G 74 -5.3 -4.84527 | overlap 533261 TAGAAGCCTTATTGA GTTTGATTGCAAA CGCGCT TTTACAATCAAGC TTTTTACTCTATGCG metS 531922 - 533853 + | methionyl-tRNA synthetase TERM 466 534426 - 534414 - g 74 -7.7 -3.97444 | opp_overlap 534414 AGAGCATGAATTAAA GATGC CAT GCATC TTTTTAGAGCCTTTA TERM 467 534414 - 534426 + G 83 -7.7 -4.60924 | opp_overlap 534414 AGAGCATGAATTAAA GATGC CAT GCATC TTTTTAGAGCCTTTA Hac_0606 533854 - 534861 + | hypothetical protein Hac_0607 534865 - 535653 + | methyltransferase Hac_0608 535675 - 536103 + | hypothetical protein capJ 536110 - 537282 + | type 1 capsular polysaccharide biosynthesis protein J TERM 468 537588 - 537610 + G 73 -8.4 -3.64371 | CCCTCGTTTGTTTTG CCCTTAGTGC AAG GGGCTAAGGG TTTAAACTATGGCTT speA 537294 - 539141 + | arginine decarboxylase Hac_0611 540135 - 539236 - | hypothetical protein fragment 540471 - 540292 - | - hypothetical protein fragment 540883 - 540527 - | - hypothetical protein Hac_0615 541400 - 540978 - | hypothetical protein TERM 469 541143 - 541127 - G 77 -6.5 -4.63218 | opp_overlap 541127 541126 541129 TTTTGTCTAACAAAA CACGCAT GTT AGGCGTG ATTTCAATCTCAAGT Hac_0616 542136 - 541411 - | hypothetical protein TERM 470 541448 - 541458 + g 89 -4 -5.77853 | AAATAAGAGTGTAGG TATC GTT GATA TTTTTTTTGAAGGTT fragment 542294 - 542169 - | - hypothetical protein fragment 542610 - 542287 - | - hypothetical protein TERM 471 543049 - 543038 - H 70 -4.4 -4.78149 | GTTACAAGCCAAAAA GCTT AAAA AAGC TAAAAGCTCATAACT TERM 472 543674 - 543692 + H 72 -8.9 -2.76696 | overlap 543673 CCATAGAAAGTGATA GCCTTGT ATGCG ACAAGGC GTTCTTAGGCAGCAG TERM 473 543840 - 543828 - H 70 -6.2 -4.2354 | GAAAGGTGAAAAGAA CCGC AGTGA GCGG AGTGAAATAGAACCT TERM 474 546397 - 546445 + H 100 -14.9 -3.47349 | opp_overlap 546398 546402, overlap 546398 546403 ACAGCTCCCTAATAA AGAAAGGGGAGTTAAGGGTAAAT GCG GTTTATCTTTAACTCCCTTTTCC TTGTGCCTTTAGAGA TERM 475 546398 - 546444 + H 100 -18.4 -2.68088 | opp_overlap 546398 546402, overlap 546397 546403 CAGCTCCCTAATAAA GAAAGGGGAGTTAAGGGTAAAT GCG GTTTATCTTTAACTCCCTTTTC CTTGTGCCTTTAGAG TERM 476 546444 - 546398 - H 100 -11.1 -4.1552 | opp_overlap 546397 546398 546403, overlap 546402 CAGCTCCCTAATAAA GAAAGGGGAGTTAAGGGTAAA TGCGG TTTATCTTTAACTCCCTTTTC CTTGTGCCTTTAGAG TERM 477 546440 - 546402 - H 76 -6.1 -4.67607 | opp_overlap 546398 546397 546403, overlap 546398 TCCCTAATAAAGAAA GGGGAGTTAAGGGTAAA TGCGG TTTATCTTTAACTCCCT TTTCCTTGTGCCTTT TERM 478 546403 - 546439 + H 100 -14.7 -4.50661 | opp_overlap 546402 546398, overlap 546398 546397 CCCTAATAAAGAAAG GGGAGTTAAGGGTAAAT GCG GTTTATCTTTAACTCCC TTTTCCTTGTGCCTT Hac_0620 546569 - 546895 + | hypothetical protein Hac_0621 547037 - 547225 + | hypothetical protein Hac_0622 547252 - 547431 + | hypothetical protein Hac_0623 547433 - 547861 + | hypothetical protein TERM 479 548438 - 548415 - g 71 -3.2 -5.08824 | CTTTTATCCAAAAAA GACGAAATTC TAGC GAATTTTATC GCACAAGTCGCCTTT TERM 480 548573 - 548595 + G 73 -8.4 -3.63878 | GGCCTTAAAAGACTC TCTCTCAAGC ATT GCTGGAGGGA TTATCCTTATTGTGT TERM 481 549021 - 549011 - g 71 -4.6 -4.7373 | TGAGCGCATCAAAAA CGCC CTA GACG CTAACCAGATTGAAA Hac_0625 548265 - 549089 + | hypothetical protein TERM 482 549603 - 549579 - g 82 -4.9 -5.40464 | TACGATAAAGAAAAA GAGCGTCTAAA ATT CTTTGCCGCTC AAAATTACAAGAGCA fragment 549213 - 549647 + | COG1479S hypothetical protein TERM 483 550287 - 550299 + G 72 -6.3 -4.45723 | TACCCTGATTTTGAC GCTTT GAA AAAGC TTTTGGTGTCTTATT Hac_0627 549678 - 550943 + | hypothetical protein TERM 484 550975 - 550962 - f 76 -9.5 -3.14255 | overlap 550961 AGAATGATGGAAAAT CGCCC ATAA GGGCG TAAAACAATAAGGAG fragment 551114 - 551233 + | - hypothetical protein fragment 551270 - 551608 + | - hypothetical protein fragment 551739 - 552182 + | - hypothetical protein ftsZ 553674 - 552517 - | cell division protein FtsZ ftsA 555289 - 553808 - | cell division protein FtsA Hac_0634 556768 - 555305 - | hypothetical protein TERM 485 556097 - 556112 + g 76 -5.4 -4.87786 | TGTTTTAAAGCTCGT GGGCTT TTTA AAGTCC TTTTTATGGGATTCA TERM 486 557482 - 557462 - g 79 -6.9 -4.61868 | opp_overlap 557467 557470 557471 TAGCGAGATAGAAAA CGCCCTAAA CGC TTTAAAGCG CTTGTTAGATGCACA TERM 487 557910 - 557894 - g 72 -2.3 -5.26119 | TTTTGAAAAAGAAAA TGTTATT GAA AAAAACA AGGTTTTAAGCGAGT bioA 556896 - 558227 + | adenosylmethionine--8-amino-7-oxononanoate transaminase pyrH 558272 - 558994 + | uridylate kinase rpoZ 559034 - 559258 + | DNA-directed RNA polymerase subunit omega TERM 488 560041 - 560053 + G 72 -6.9 -3.90092 | TTAAACTCGTTTCAA GGGTG AAG CGCCC TTATTCTATCCATCT TERM 489 560882 - 560894 + G 70 -9.1 -3.14344 | ATTAGTGGATTGTGG GGTGG AAA CCACC TTAATAGAAGCGATG TERM 490 561036 - 561055 + G 75 -4.4 -5.02074 | TTAAGGTATTTGGGT TTTAAAAC TAGT GTTTTGAA TTTTTTAACCCCTAA spoT 559245 - 561566 + | GTP pyrophosphokinase TERM 491 561964 - 561951 - g 79 -6.7 -4.80882 | opp_overlap 561951 561950 ATCTTAGATCAAAAA CACAC GGAG GTGTG CTTTAATTCCACTTG tyrS 561591 - 562799 + | tyrosyl-tRNA synthetase TERM 492 563445 - 563460 + G 76 -10.4 -2.72344 | opp_overlap 563445 563446, overlap 563453 GAAGCTTCTAAAGAA TGGGGG AATC CCCCCA TCATTGCAGCTGGAG TERM 493 563460 - 563445 - g 85 -10.4 -3.9243 | opp_overlap 563445 563453, overlap 563446 GAAGCTTCTAAAGAA TGGGGG AATC CCCCCA TCATTGCAGCTGGAG TERM 494 563458 - 563446 - g 77 -10.5 -2.94976 | opp_overlap 563445 563453, overlap 563445 AAGCTTCTAAAGAAT GGGGG AAT CCCCC CATCATTGCAGCTGG Hac_0640 562815 - 563906 + | hypothetical protein TERM 495 564222 - 564208 - g 76 -7.2 -4.26188 | GCTATACACCTAAAA TGACTT ATG AAGTCA AAATCCTTAAAGACA amiA 563913 - 565247 + | hypothetical protein Hac_0642 565266 - 566003 + | hypothetical protein Hac_0643 566691 - 566008 - | hypothetical protein TERM 496 566396 - 566411 + g 72 -5.4 -4.55295 | opp_overlap 566409, overlap 566409 AACACTTGAGAAAGG GCGTTT GAAG AAGCGC TTTCTTTATCAAAAG TERM 497 566409 - 566428 + g 71 -3.6 -4.87052 | opp_overlap 566409, overlap 566396 GGGCGTTTGAAGAAG CGCTTT CTTTATCA AAAGCG TTTTCTTGATTTATA acnB 566823 - 569381 + | bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase TERM 498 569399 - 569410 + T 79 -7.2 -4.48299 | opp_overlap 569399 TTATTTTTATTAAAA GGGG TGAT CCCC TTTATTTAGCTGTGG TERM 499 569410 - 569399 - T 76 -7.2 -4.26076 | opp_overlap 569399 TTATTTTTATTAAAA GGGG TGAT CCCC TTTATTTAGCTGTGG flhB 571078 - 570002 - | flagellar biosynthesis protein FlhB TERM 500 570131 - 570144 + g 72 -2.3 -5.23292 | opp_overlap 570130 570131, overlap 570126 CACATCTCTATAAAG CTCTC TGGC GAGCG TTTTATTTTCTATAA fragment 571615 - 571722 + | COG3142P hypothetical protein TERM 501 571728 - 571710 - f 70 -7.4 -3.66908 | GCTTGGGAAAACCAA CACCACTC TTT AAGCGGTG GAGTTATGGCAGGCA TERM 502 571801 - 571819 + G 73 -4.5 -4.8667 | TCGGAGCTTTTATGG GTGTGGC GTTGA GCCAAAC TTTTTATGGCATCTC fragment 571734 - 572075 + | COG0538C hypothetical protein TERM 503 572254 - 572222 - g 73 -2.7 -5.28481 | TATGGAATTAAAAAA GGGATTGATGCGATC GAT GATAACATGAATGCC GATGATATTATCAAA fragment 572195 - 572311 + | hypothetical protein fragment 572327 - 572512 + | - hypothetical protein fragment 572509 - 572628 + | - hypothetical protein TERM 504 572699 - 572677 - g 100 -7.8 -5.4148 | opp_overlap 572682 GAAAGAATCAAAAAA GCAAACGATT CTC AATCGTTTCC CTTGCATCTCTTGTG fragment 572660 - 572980 + | COG0727R hypothetical protein TERM 505 573129 - 573147 + T 87 -10.4 -3.61641 | opp_overlap 573111 573110 573127, overlap 573127 573136 TTTTAATAAGCTATC GCTTGATT AAA AATCAAGC TCTTTGATATTTATT TERM 506 573136 - 573160 + T 76 -3.7 -5.45802 | opp_overlap 573111 573110 573127, overlap 573129 573127 AAGCTATCGCTTGAT TAAAAATCAAG CTC TTTGATATTTA TTTTTATTTTAAAAA TERM 507 573168 - 573195 + T 77 -8.7 -3.76224 | GATATTTATTTTTAT TTTAAAAATGC TCAAAC GCATTTTTAAA TTTCATGACTCCACA ftsY 574079 - 573198 - | cell division protein TERM 508 573500 - 573516 + g 70 -5.1 -4.68506 | overlap 573500 573503 TAGAGCAGGTGCGTG CGATCTT AGA AAGCTCG TTTTTGAGATTGGTT Hac_0654 574636 - 574085 - | hypothetical protein Hac_0655 574761 - 575402 + | hypothetical protein TERM 509 575850 - 575834 - g 73 -3.6 -5.11033 | overlap 575824 TAGAAGCGCAAAAAA GCGCAT TAATC AGGCGC TATGAAAAAGAAGCC Hac_0656 575380 - 576891 + | phosphodiesterase Hac_0657 578187 - 576898 - | hypothetical protein Hac_0658 579527 - 578214 - | putative permease TERM 510 579556 - 579581 + r 75 -4.8 -5.00616 | opp_overlap 579557 579573, overlap 579557 TAAAGTGAAAATACC ACGCAAAAAT GATAGA ATTTTTGCGC TTTTTTAGCACAAAA TERM 511 579557 - 579580 + r 75 -8.3 -3.60048 | opp_overlap 579557 579573, overlap 579556 AAAGTGAAAATACCA CGCAAAAAT GATAGA ATTTTTGCG CTTTTTTAGCACAAA TERM 512 579597 - 579573 - R 75 -8 -3.72037 | opp_overlap 579557 579556, overlap 579557 GCAAAAATGATAGAA TTTTTGCGCT TTTTT AGCACAAAAA ACTGCACTTGCCATG Hac_0661 580510 - 579629 - | beta-alanine synthetase TERM 513 580391 - 580414 + g 76 -4.7 -5.12617 | gap 1, opp_overlap 580396 GTTTAATTCTTGCAA CACCACTAAA TTGGT TTTAG-GGTG TTTTTTGAGTGCTTG Hac_0662 580660 - 580514 - | hypothetical protein moeB 581333 - 580662 - | molybdopterin biosynthesis protein Hac_0664 581626 - 581387 - | hypothetical protein fliS 581993 - 581613 - | flagellar protein FliS TERM 514 581826 - 581842 + g 75 -4.5 -5.11836 | GAAAATATCCGTAAT TCTATTA ATA TAGTAGA TTTTCTTTTCAATGT fliD 584095 - 582038 - | flagellar capping protein flaG 584478 - 584113 - | flagellar protein FlaG Hac_0668 585759 - 584572 - | hypothetical protein TERM 515 584821 - 584837 + g 70 -5.1 -4.56597 | overlap 584823 GTCTAGAACATTACG CACCAAA GCG TTTGGGG TTTTTGACACAAGCG TERM 516 585160 - 585178 + g 81 -7.4 -4.76213 | overlap 585163 CGCATAATCTTTTTG CATGCTCA AAA TGAGCTTG TTTTGTTCGGTTTGT TERM 517 585163 - 585175 + g 80 -7.7 -4.45817 | overlap 585160 ATAATCTTTTTGCAT GCTCA AAA TGAGC TTGTTTTGTTCGGTT TERM 518 585434 - 585446 + g 75 -3.3 -5.24129 | AAATCTTGCAAAAGC GTGTC AAA GACTC TTTTTTGTAAAAACG TERM 519 585537 - 585553 + g 71 -3.7 -5.0133 | overlap 585540 CCAAACTTTCGTTAC GATTCTT TTC AAGATTC TTTTTTAAAGCCGTC ftsX 586574 - 585762 - | cell division protein FtsX TERM 520 585896 - 585906 + g 80 -2.6 -5.626 | CCAAAGTATCCATGA TTTT TTC AAAA TTTTTTTGTGAAGTG ftsE 587232 - 586561 - | cell division ABC transporter, ATP-binding protein FtsE trmB 588403 - 587207 - | tRNA (guanine-N(7))-methyltransferase TERM 521 587780 - 587791 + gr 75 -2.2 -5.37345 | AAATCTTTCGCTTAA CACT CGGC GGTG TTTTTTGTCATTCCA Hac_0672 589643 - 588414 - | fibronectin domain-containing lipoprotein Hac_0673 590604 - 589624 - | pseudouridine synthase TERM 522 590443 - 590427 - G 71 -6.5 -4.07568 | opp_overlap 590407 590427 590425 TTTTGGGTGTTAAAA GTGCGAT TTC ATCGCCC TCTTTTAAGGCTAAT TERM 523 590703 - 590716 + H 75 -8.1 -3.72984 | CGCTATACCCATGTG CCACC ACTA GGTGG TTTAAATCATTGTAA fragment 591090 - 591614 + | COG3597S hypothetical protein fragment 591623 - 591946 + | - hypothetical protein TERM 524 592714 - 592726 + G 72 -4.8 -4.84539 | TCAAATTCTTGCCTA TCGC AACGA GCGA TTTTATCTTTGCTTA rodA 591969 - 593114 + | rod shape-determining protein RodA prsA 594114 - 593179 - | ribose-phosphate pyrophosphokinase Hac_0678 594663 - 594178 - | HIT family protein murF 596154 - 594673 - | D-alanyl-D-alanine-adding enzyme Hac_0680 596866 - 596141 - | 2-hydroxy-6-oxohepta-2,4-dienoate hydrolase TERM 525 596351 - 596365 + g 75 -4.2 -5.07107 | opp_overlap 596351 GAAATGATCGCTAAA GTCTTC ACT GACGAC TTTTTTAAAGGTTTC TERM 526 596739 - 596724 - G 71 -3.2 -5.15969 | opp_overlap 596726, overlap 596726 TTGTAATTTAAAAAA CAGCGT TGAA ACGCTT GTTGCATCACTTCTT TERM 527 596737 - 596726 - G 70 -5.8 -4.20888 | opp_overlap 596726, overlap 596724 GTAATTTAAAAAACA GCGT TGAA ACGC TTGTTGCATCACTTC ddl 597918 - 596866 - | D-alanyl-alanine synthetase A TERM 528 597820 - 597810 - G 76 -2.6 -5.47218 | opp_overlap 597810 TTTCATCTAAAAAAA TAAA ATA TTTA ATTTGATCTTTCAAC pgpA 598469 - 597993 - | phosphatidylglycerophosphatase A TERM 529 598396 - 598406 + g 71 -3.2 -5.0538 | ACTAAACTCCCTATC GTTC CAG GAGC TTTTTTAGAATAACC TERM 530 599058 - 599047 - g 70 -5.8 -4.30987 | ACCCTGTAGAAGAAA TCGC TCAA GCGA TCAAAGAAACCAATA serC 598617 - 599726 + | putative aminotransferase gpt 599735 - 600196 + | xanthine-guanine phosphoribosyltransferase TERM 531 600223 - 600212 - g 73 -3 -5.2853 | opp_overlap 600212 CATGCAAAAAGAAAA CAAA CAAC TTTG CTTAATCTCATTAGG Hac_0685 600198 - 601514 + | putative 2-methylthioadenine synthetase fragment 601618 - 601890 + | - hypothetical protein TERM 532 601908 - 601888 - f 71 -6.9 -4.04071 | opp_overlap 601887 AAAGATCAACAAGAA TGATTCAAG CAA CTTGATTCA AATTATCAAAAGAAA fragment 602565 - 602891 + | - hypothetical protein fragment 602876 - 603052 + | - hypothetical protein fragment 603090 - 603317 + | - hypothetical protein fragment 603438 - 603617 + | - hypothetical protein fragment 603685 - 604335 + | COG0699R hypothetical protein fragment 604521 - 604967 + | - hypothetical protein TERM 533 605065 - 605054 - gf 79 -2.2 -5.62219 | AAGACATTAAAAAAA CGCA AGAG TGCA GGGAAGAACTTGAAA fragment 604927 - 605133 + | - hypothetical protein Hac_0695 605231 - 605536 + | hypothetical protein Hac_0696 605545 - 606615 + | putative ATP /GTP binding protein Hac_0697 606620 - 607669 + | hypothetical protein gapA 608816 - 607818 - | glyceraldehyde 3-phosphate dehydrogenase TERM 534 608720 - 608739 + g 73 -7.2 -4.1347 | gap 1 CAGGGTCGTTGATAC CCACCACTT CTA AAG-GGTGG TTTGTGTCGTTGCGC Hac_0699 608963 - 609655 + | hypothetical protein TERM 535 610339 - 610329 - g 71 -4.6 -4.71382 | AGAATTAGCTAAAAA CGCC CTA GACG CTTCGCCCATCAATG TERM 536 611918 - 611932 + G 72 -7.2 -3.90762 | opp_overlap 611918 611920, overlap 611916 ACATTGCTGAAGATA GAGAAA AAT TTTCTC TCTTTTTAAAAGATC carB 609754 - 613155 + | carbamoyl phosphate synthase large subunit TERM 537 613278 - 613260 - g 75 -3.1 -5.26119 | opp_overlap 613260, overlap 613255 GCCCTAAAAATAAAA GCGTTTT AATAG AAAGCGC TGATTTTAGAACTTT Hac_0701 613160 - 613591 + | hypothetical protein TERM 538 615021 - 615011 - g 71 -6.8 -4.12188 | opp_overlap 615010 CTATTACTTTTAAAA GCCT TGG AGGC GGTTCTGTCGTCGCT frpB 613795 - 616239 + | iron-regulated outer membrane protein TERM 539 617132 - 617121 - g 79 -3.6 -5.47218 | overlap 617122 CCTTATTTAAAAAAA GGAG GCAA CCCC AACAACAGCAACGAT hofG 616446 - 617984 + | hof family outer membrane protein Hac_0704 619025 - 618081 - | hypothetical protein TERM 540 619051 - 619067 + H 71 -5.3 -4.70107 | CGTTGTTTTGATATT TTTATTA TAT TAATAAA TTTCTTATTTTAGTC TERM 541 619142 - 619158 + H 70 -6.5 -4.25283 | overlap 619154 TATCCTATCCATATT GCATGCT ATG AGCAAGC TTTTAATGGCAAGCT hofC 619297 - 620883 + | hof family outer membrane protein TERM 542 621640 - 621656 + G 70 -5.1 -4.53475 | opp_overlap 621640 AAATACGAAAAAAAT GGTTTGA AAA TCAACCC TTATTTTTATGCGAT hofD 620950 - 622347 + | hof family outer membrane protein Hac_0707 622565 - 622386 - | hypothetical protein TERM 543 622841 - 622815 - R 74 -5.4 -4.7416 | opp_overlap 622820, overlap 622784 622820 TCAAAATTTCAAAAA TAAAATAAAAAT TTC ATTTTTATTTTT AGAAAATGCAAAAAA TERM 544 622836 - 622820 - R 80 -5.3 -5.27023 | opp_overlap 622820, overlap 622815 ATTTCAAAAATAAAA TAAAAAT TTC ATTTTTA TTTTTAGAAAATGCA TERM 545 622820 - 622836 + r 71 -5.3 -4.58395 | opp_overlap 622820 622815 ATTTCAAAAATAAAA TAAAAAT TTC ATTTTTA TTTTTAGAAAATGCA TERM 546 622857 - 622867 + r 72 -2.6 -5.41143 | opp_overlap 622857 622850 AGAAAATGCAAAAAA TTTT TGA AAAA TTTTTTTGAAAGATA Hac_0709 623001 - 622840 - | hypothetical protein mod 623081 - 623722 + | - COG2189L methyltransferase fragment 1 TERM 547 623759 - 623747 - f 82 -6.3 -5.09225 | AGCTTATGTAAAAAA CATAG AAG CTATG GATAATTTTGAACTT mod 624151 - 624711 + | - COG2189L methyltransferase fragment 2 Hac_0712 624704 - 626725 + | hypothetical protein omp6 627521 - 627931 + | - - outer membrane protein 6 fragment 1 omp6 627951 - 628058 + | - - outer membrane protein 6 fragment 2 Hac_0715 629099 - 628089 - | hypothetical protein TERM 548 628340 - 628324 - G 76 -3.7 -5.33405 | CGCACCAAAGAAAAA TTGACAT CAT AAGTCAA GTCGCTTTGTTGATA TERM 549 628544 - 628533 - G 72 -5.8 -4.40963 | opp_overlap 628533 628530, overlap 628530 AGCGTTCAAAAACAA GGGT GCAC ACCC TTCTTTTAAATTCAA TERM 550 628533 - 628544 + g 70 -5.8 -4.25859 | opp_overlap 628530 628533, overlap 628530 AGCGTTCAAAAACAA GGGT GCAC ACCC TTCTTTTAAATTCAA TERM 551 629498 - 629509 + G 74 -5.8 -4.57341 | ATGATATTTTTCATT TGGG CATG CCCA TTTTTAGCCCCACTT Hac_0716 629230 - 629847 + | hypothetical protein TERM 552 629880 - 629870 - f 74 -5.4 -4.92314 | ACCAAGCCAGAAAAA GAGT GTT ACTC ATTCAATGCATTCAT motA 629929 - 630702 + | flagellar motor protein MotA TERM 553 631173 - 631157 - g 79 -7.9 -4.27686 | TAAAATCATTCAAAA GCTCCCT AAA AGGGTGC ATATCAATGTGAGAG motB 630705 - 631466 + | flagellar motor protein MotB TERM 554 631627 - 631613 - g 79 -4.2 -5.243 | TAAAGGATCAAAAAA CGCGTT TAA AACTCG CTCAAAGCCCTTTGG Hac_0720 631480 - 631911 + | hypothetical protein TERM 555 633286 - 633304 + G 75 -7.5 -4.17089 | CTTTTAAGGGCTTAG TGAAAGC CTATC GCTTTCA TTTTAGAAGTTTGCA proWX 631980 - 633635 + | osmoprotection protein proV 633639 - 634289 + | osmoprotection ATP-binding protein Hac_0724 634466 - 634927 + | hypothetical protein TERM 556 636053 - 636042 - g 75 -2.2 -5.4833 | TTAGCCAAGAAAAAA CCTC TAAC GAAG AAGAAATCTTAGAAG TERM 557 636248 - 636235 - g 70 -8.1 -3.24032 | opp_overlap 636233, overlap 636233 636243 AGGCTCTAATGAATA CGCTC AAAT GAGCG AATTGCTCACCAGAA uvrC 634928 - 636712 + | excinuclease ABC subunit C hom 636723 - 637988 + | homoserine dehydrogenase Hac_0727 637989 - 638333 + | hypothetical protein trxA 638420 - 638740 + | thioredoxin TERM 558 638814 - 638830 + G 79 -5.8 -4.86731 | opp_overlap 638812 TTATGCCACTAGAGG CGGTGT CAAAA ACGCCG TTTTGTTTGAAAAAG trxB 638746 - 639681 + | hypothetical protein TERM 559 639712 - 639734 + T 74 -5.6 -4.87389 | overlap 639687 639725 TTGGATTTAGGGTTA TGAGCTTTTG CTC CAAATGTTCA TTTGTTTTTAAAATC fragment 640952 - 640116 - | COG1479S hypothetical protein fragment 642174 - 640927 - | COG1479S hypothetical protein TERM 560 641559 - 641569 + gr 71 -8.2 -3.32769 | GCCCTTTTAATTGCA CGCC TGT GGCG TTAATGCTTTCAAAC TERM 561 642265 - 642253 - R 76 -3.3 -5.4477 | AAATTTTGAAAAAAA CCGCA ATT TGTGG GTGGATTTAAGAGAT TERM 562 642335 - 642325 - R 71 -5.4 -4.62783 | opp_overlap 642318 642318 642325 TATTTATCTTAAAAA TGCT AAA AGCA TTTTTTAATTTCTAT TERM 563 642325 - 642335 + r 84 -5.4 -5.4387 | opp_overlap 642325, overlap 642318 642318 TATTTATCTTAAAAA TGCT AAA AGCA TTTTTTAATTTCTAT Hac_0733 643390 - 642347 - | hypothetical protein dapD 644607 - 643402 - | hypothetical protein TERM 564 644394 - 644405 + g 81 -4.4 -5.4505 | CGCATTCGCTTGCAC TCCT TTTA AGGA TTTTTTCTTCAGAAA TERM 565 644614 - 644626 + r 85 -4.9 -5.61913 | ATTCATCATCCTGTC CTTTA ATT TAAAG TTTTTTCTCTTTCTT ispG 645692 - 644616 - | 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase aspB 645835 - 646962 + | hypothetical protein TERM 566 647359 - 647378 + G 80 -10 -3.61894 | GATGTTGAGCGCGAT TTGCCCCA CTTT TGGGGCGA TTATTGGGGCGCATT TERM 567 647680 - 647666 - g 93 -3.6 -5.94713 | ATCTTAGAAAAAAAA GACATT CAA AATATC CAATACATTTTAAAA murC 646955 - 648304 + | UDP-N-acetylmuramate--L-alanine ligase TERM 568 648477 - 648492 + G 72 -5.4 -4.56597 | opp_overlap 648476 648477 AAACCAACAAGAAAT CGCTTT GCAA AGAGCG TTTTTAAGGGGGGAA Hac_0738 648304 - 648666 + | hypothetical protein TERM 569 649432 - 649444 + G 74 -4.9 -5.01732 | opp_overlap 649425 TTTTAAGATTCCTTT TCAAA GAA TTTGA TTTTTTAGACAGCTT TERM 570 650106 - 650116 + G 72 -2.4 -5.26875 | overlap 650110 ACCGCTCTGCGTTAT GGCG TGC CGCG TTTTTTGATTGAAAA TERM 571 650517 - 650493 - g 83 -7.1 -4.90013 | overlap 650513 650514 CAAGCTAACGAAAAA GCACGCTATAA AAA TGAAAGCGTGC TGATCGCACAGATTT TERM 572 650847 - 650834 - g 75 -4.5 -5.06103 | AGAATTTTTAAAAAA CCACC CTAA AGTGG TAAGCTTTAGCGACG mutS 648666 - 650909 + | recombination and DNA strand exchange inhibitor protein Hac_0741 651820 - 650993 - | pbeta-1,4-galactosyltransferase TERM 573 651926 - 651916 - R 71 -5.4 -4.58663 | ACTATTTGCCAAAAA CTTG ATG CAAG TGCGTAGTGAGAGAG mdaB 652486 - 651902 - | modulator of drug activity B TERM 574 652910 - 652920 + G 71 -4 -4.96646 | TGCAGATCCCACTAT TGAT AGC ATCA TTTTTGATTATATCA TERM 575 652964 - 652944 - g 71 -8.4 -3.4439 | TATATCAACCTAGAA TACCATGA GACTA TCATGGTA GGGAGCGGTTTTCAA hyaA 652608 - 653765 + | hydrogenase small chain hyaB 653775 - 655511 + | hydrogenase large chain hyaC 655524 - 656192 + | Ni/Fe hydrogenase cytochrome b subunit hyaD 656189 - 656725 + | hydrogenase expression/formation protein TERM 576 657460 - 657481 + G 74 -5.3 -4.82901 | opp_overlap 657460 ATGAGGGTATAGAAT TTGTTTTTG CACA TAAAAACAA TTTTTGTGAAAACAA Hac_0748 656730 - 658280 + | hypothetical protein Hac_0749 658642 - 658286 - | hypothetical protein Hac_0750 659167 - 658724 - | hypothetical protein omp7 659340 - 659699 + | - - outer membrane protein 7 fragment 1 omp7 659786 - 660298 + | - - outer membrane protein 7 fragment 2 TERM 577 660285 - 660322 + T 76 -7.2 -4.21773 | opp_overlap 660290, overlap 660292 ACTATACATATACCT TTAAAGGGCGTTAAAA CACGCT TTTTATCGCTCTTTGA TTGTTTGTCTTAAAA TERM 578 660396 - 660406 + T 75 -8.2 -3.60971 | opp_overlap 660403 GCTATGGTGATGGTT GGCG AAA CGCC TTTAGGCGTTAAAAT TERM 579 660541 - 660527 - T 87 -10 -3.95051 | opp_overlap 660527 660526 TAACAAGCTTATAAA CCCCTA TTT TAGGGG ATTTTAAAAAATTTC TERM 580 660527 - 660541 + T 81 -10 -3.07283 | opp_overlap 660527, overlap 660526 TAACAAGCTTATAAA CCCCTA TTT TAGGGG ATTTTAAAAAATTTC TERM 581 660733 - 660714 - T 100 -9.2 -5.32882 | CACTAGCACAAAAAA CTCCGTCC TTTA GGGCGGAG ATGTAAGTGCTTAGC ISHa1942 661197 - 660793 - | COG1943L ISHa1942 transposase A-like protein ISHa1942 661311 - 661730 + | Hac_0755 - COG0675L ISHa1942 transposase B fragment 1 ISHa1942 661717 - 662610 + | Hac_0756 - COG0675L ISHa1942 transposase B fragment 2 repA 662868 - 662617 - | - replication initiation protein A, N-terminal fragment TERM 582 663414 - 663397 - R 73 -7.7 -3.72027 | ATTCTCCACCAATAA GAGTTGG TGCC CCAACCC TATGAATATTGATAA ISHa1152 663608 - 663510 - | Hac_0758 - - ISHa1152 transposase B fragment 3 TERM 583 663556 - 663566 + g 76 -4 -5.25803 | GGCAATTTGGCTTGT TTCT TAA AGAA TTTTTTATACGCCTT ISHa1152 663755 - 663630 - | Hac_0760 - - ISHa1152 transposase B fragment 2 ISHa1152 663825 - 663712 - | Hac_0761 - - ISHa1152 transposase B fragment 1 ISHa1152 664198 - 663794 - | COG1943L ISHa1152 transposase A TERM 584 664392 - 664382 - R 75 -8.2 -3.60971 | opp_overlap 664374 ATTTTAACGCCTAAA GGCG TTT CGCC AACTATCCCCATGGC TERM 585 664463 - 664451 - R 74 -6.9 -4.25859 | overlap 664448 GGTAAGTTAAAACAA CGCGC ATG ACGCG TCACATAATTTTGGA TERM 586 664693 - 664671 - R 74 -8.5 -3.35679 | gap 1, opp_overlap 664664 664670 CTGCTTTAGCTAGAA TCCCC-TAGC TTTA GCTATGGGGA GTATGTCAAAAGAAT mccC 665966 - 664803 - | MccC-like protein mccB 666485 - 665982 - | - MccB-like protein fragment TERM 587 666381 - 666417 + g 100 -7.6 -5.51612 | gap 1, overlap 666383 CGTCGATAGTTGCAC TGTGTTTGGA-TTATCT CCAG AGATAACTCCAAACAAA TTTTCTTTTTTATGT TERM 588 666383 - 666415 + g 75 -10.2 -2.89944 | gap 1, overlap 666381 TCGATAGTTGCACTG TGTTTGGA-TTATCT CCAG AGATAACTCCAAACA AATTTTCTTTTTTAT TERM 589 666568 - 666541 - R 85 -9.3 -3.99407 | opp_overlap 666541 666540 666543 ATAAATTTTAAATAA TTGCACTCTAC ACTCTA ATAGAGTGCAA GTTCTGAGTTAATTG TERM 590 666763 - 666741 - R 74 -8.5 -3.35679 | gap 1, opp_overlap 666734 666740 CTGCTTTAGCTAGAA TCCCC-TAGC TTTA GCTATGGGGA GTATGTCAAAACCTA Hac_0767 667446 - 666769 - | hypothetical protein TERM 591 667768 - 667743 - g 72 -6.3 -4.40963 | AGCCCTTAAAAACAA TAAAAGCTATG AAAT CACAACTTTTA GGGTTGAAAAGGGGC TERM 592 667936 - 667920 - g 85 -9.5 -4.24002 | opp_overlap 667920 667917, overlap 667933 TTTTAAAGGGCAAAA TGCGATT GAA AATCGCA TGATTGAATGCGTGG TERM 593 667920 - 667936 + G 72 -9.5 -2.75712 | opp_overlap 667920 667933, overlap 667917 TTTTAAAGGGCAAAA TGCGATT GAA AATCGCA TGATTGAATGCGTGG TERM 594 668110 - 668098 - g 74 -7.7 -3.9122 | CACCTTTCCAAAGAA CGCTT GCA AAGCG AATTGAATAAGCTTC papS 667507 - 668664 + | poly(A) polymerase Hac_0770 668738 - 669724 + | putative transcriptional regulator Hac_0771 669721 - 670653 + | putative outer membrane protein Hac_0772 671282 - 670650 - | hypothetical protein TERM 595 670706 - 670690 - G 80 -7.9 -4.4448 | overlap 670692 AAATCCCTAAATAAA GTGACGC TAA GCGTCCC CATAATGGCGGTTAC TERM 596 671412 - 671383 - H 78 -5.9 -4.79451 | opp_overlap 671392, overlap 671385 671392 ACGCTAAACATAAAA TCTAAAAAATGCT AAAA AGCATTTTTTTAA GATAAATAGTAAAGA TERM 597 671392 - 671403 + H 81 -4.4 -5.44119 | opp_overlap 671392 671385 671383 ATAAAATCTAAAAAA TGCT AAAA AGCA TTTTTTTAAGATAAA TERM 598 671403 - 671392 - H 77 -4.4 -5.28315 | opp_overlap 671392, overlap 671385 671383 ATAAAATCTAAAAAA TGCT AAAA AGCA TTTTTTTAAGATAAA Hac_0773 671680 - 672102 + | hypothetical protein Hac_0774 672132 - 672602 + | hypothetical protein TERM 599 672646 - 672684 + F 89 -11.8 -3.12505 | opp_overlap 672653 672660, overlap 672644 672660 CTTCAAACCTTTTGG GCATGAATCCTAAACGCT TTG AGCGTTTGGGGTGTGTGC TGTTAGCTATCGCAT Hac_0776 672980 - 673195 + | hypothetical protein TERM 600 673319 - 673309 - T 71 -5.4 -4.64676 | opp_overlap 673309, overlap 673310 TCAGTTTCAATAAAA CTTG ATA CAAG TTTCCCTTATATCTA TERM 601 673415 - 673430 + T 72 -4.7 -4.75776 | TAGTTTCTTTTAGCA TGCCA AGATAC TGGCA TTTTTGAATTGACTT TERM 602 673707 - 673738 + T 83 -8.3 -4.16251 | gap 1, opp_overlap 673716, overlap 673710 AAACTATGTTTATAG TAACTTAAAGCTCT TTTTT AGAGCTT-AAGTTA TTTTGACCCTTGTAT accA 674710 - 673769 - | acetyl-CoA carboxylase carboxyltransferase subunit alpha TERM 603 674082 - 674071 - G 71 -4.4 -4.69622 | ATATAACGCTAAAAA TGGA ATAT TCCA TCATCGCCAACTTGT fabF 675972 - 674734 - | 3-oxoacyl-(acyl carrier protein) synthase II TERM 604 675150 - 675125 - G 71 -6.7 -4.08767 | gap 1, opp_overlap 675120 675133 TTCATGGCTCTAAAA GCCCCTTCGCCC TCA GGG-GCTGGGGC TGTGATATGGTTAGC TERM 605 676066 - 676046 - R 78 -6.9 -4.41895 | AATTTTTAAGTAAAA CTTGGAG ACAAACG CTCCAAG TCAAAAAGATTAGGC acpP 676312 - 676076 - | hypothetical protein fabG 677273 - 676530 - | 3-ketoacyl-(acyl-carrier-protein) reductase rpsU 677519 - 677307 - | 30S ribosomal protein S21 Hac_0783 678868 - 677621 - | hypothetical protein TERM 606 679110 - 679144 + G 71 -3.5 -5.07275 | opp_overlap 679121, overlap 679112 GGTCGTAAGCGTGTC GCCACAGACGAGTTG AAACG CAACTTTTCAGTGAC TTTTTATCTCTCTAA Hac_0784 679065 - 679283 + | hypothetical protein TERM 607 679273 - 679314 + T 82 -11.1 -2.71712 | gap 1, opp_overlap 679285 679296, overlap 679285 AAGGCACCAACTCAA G-CGATTCTTAAAGTAGGCT TAA AGCCTACTTTAGGCATTGAC CTTTAAGAGCAACAC TERM 608 679301 - 679285 - T 89 -10.9 -3.58269 | opp_overlap 679285 679273, overlap 679296 CAAGCGATTCTTAAA GTAGGCT TAA AGCCTAC TTTAGGCATTGACCT TERM 609 679285 - 679301 + T 89 -10.9 -3.60971 | opp_overlap 679285 679296, overlap 679273 CAAGCGATTCTTAAA GTAGGCT TAA AGCCTAC TTTAGGCATTGACCT TERM 610 679308 - 679296 - T 73 -7.7 -3.6003 | opp_overlap 679285 679273, overlap 679285 TAAAGTAGGCTTAAA GCCTA CTT TAGGC ATTGACCTTTAAGAG Hac_0785 679964 - 679317 - | hypothetical protein TERM 611 679911 - 679889 - G 74 -5.6 -4.70739 | overlap 679891 TAAAAATAATGAAAA TAGCTATATG CAT CAAATAGCCA CCTAGATTCTGGAGT dapF 680909 - 680115 - | diaminopimelate epimerase TERM 612 680359 - 680333 - G 75 -2.3 -5.41746 | opp_overlap 680333 AAGTTTGTAAAAAAA TCGTCTTTTTA TTTTC TATAAAGGCGA TATTAACATTAGCGT amaA 681025 - 682071 + | hypothetical protein flgG 682953 - 682144 - | flagellar basal-body rod protein FlgG TERM 613 682253 - 682231 - G 79 -7.1 -4.61633 | gap 1, opp_overlap 682231 ATACATGTCCAAAAA GCG-GTTGAT TTCA ATCAACGCGC TCATCTCACGCACCG kgtP 684275 - 683007 - | alpha-ketoglutarate permease TERM 614 683318 - 683280 - G 75 -6.7 -4.41206 | opp_overlap 683292, overlap 683283 AAGCATTTCATAAAA TAGGGCTTCATACACGC TAGTG GCGTGTTTGATACCATA AAAGACAAGGGGAGT TERM 615 683292 - 683306 + g 72 -7.8 -3.74693 | opp_overlap 683283 683280 AAATAGGGCTTCATA CACGCT AGT GGCGTG TTTGATACCATAAAA TERM 616 684084 - 684063 - G 72 -2.1 -5.18357 | overlap 684067 CAATTTACCAAAAAA CAAACTCCC CAAA GGGCGCATG AAAAACCCTAGCATG TERM 617 684080 - 684067 - G 73 -3.7 -5.0917 | overlap 684063 TTACCAAAAAACAAA CTCCC CAAA GGGCG CATGAAAAACCCTAG cpdB 686220 - 684478 - | 2',3'-cyclic-nucleotide 2'-phosphodiesterase TERM 618 684522 - 684542 + g 71 -3.9 -4.91511 | TGACATTCAAAGTCC TCCCATCTT TTG AAGTAGGGA TTTTTATGCTCCCAT TERM 619 686402 - 686413 + r 76 -7.2 -4.30809 | ATATTGACATTTTAA CGCC TAAG GGCG TTTTGCTAACTATTC TERM 620 686481 - 686491 + r 74 -6.8 -4.16842 | GTAAAATCTCTCTGT TGCC TTT GGCA TTTCTTGGGGATAGA ftsK 689001 - 686458 - | septum formation protein Hac_0793 691334 - 688998 - | hypothetical protein TERM 621 690893 - 690905 + g 75 -3.4 -5.21709 | opp_overlap 690893 TCTTGTCATAAAAGC CTAG TTTTT CTAG TTTTTTAATATAGCG tktA 693256 - 691331 - | transketolase TERM 622 691768 - 691758 - G 72 -2.4 -5.18371 | overlap 691761 CGCGATAAAATAAAA GCAC TAG GGGC ATTCAAGCTTAACGC TERM 623 692368 - 692381 + g 73 -3.9 -5.06451 | TAACTTTCACTTCTT CAAAA TGCA TTTTG TTTTTTGGGCTAATC TERM 624 692895 - 692883 - G 79 -7.7 -4.26344 | ACAGCGTTAGCAAAA CCTTG CCC CAAGG GACCTGTCGTGATTT ribC 694142 - 693303 - | bifunctional riboflavin kinase/FMN adenylyltransferase tly 694818 - 694111 - | hemolysin TERM 625 694176 - 694198 + gr 73 -4.2 -4.89063 | TCACTAAACTTTCTT GGATCTTTAA GAT TTGAAAATCC TTTGTTTTTAAATGG Hac_0797 695333 - 694818 - | hypothetical protein TERM 626 695311 - 695301 - G 93 -4 -5.89659 | ACAAAAAAATAAAAA TACT AGA AGTA TTGAGAGATTTTTCA TERM 627 695902 - 695887 - g 81 -3.2 -5.58209 | overlap 695872 TGAAAGGGAAAAAAA TCGCTT TCAT AGGCGA TGTGAAAAATTCAAG pyrB 695400 - 696326 + | aspartate carbamoyltransferase catalytic subunit TERM 628 696522 - 696538 + F 76 -8.7 -3.44353 | CTTTAAGGAGTTATC GCTTGCT TTA GGCAAGC TCTTTAAGGTTATTT hofB 696836 - 697630 + | - - hypothetical protein hofB 697674 - 698276 + | - - hypothetical protein TERM 629 698408 - 698430 + G 73 -2.8 -5.33124 | opp_overlap 698409 698412, overlap 698409 TAAATATCTTAAAGA ACATTATAAA AGT TTTATAGTGG TTTTATTTTCTTCTT TERM 630 699614 - 699626 + G 76 -5.5 -4.91852 | AAAGATTAGCGTTGT CACTC AAA GGGTG TTTATTTTTAATGGG msbA 698367 - 700022 + | multidrug resistance protein TERM 631 700213 - 700227 + G 70 -2.8 -5.02074 | TAAAAAAGCAATCAT TCAGCA AAT TGCTTA TTTTTTAAAAGATAA Hac_0805 700016 - 700633 + | hypothetical protein Hac_0806 700637 - 701218 + | hypothetical protein Hac_0807 702339 - 701203 - | potassium channel protein rpmB 702690 - 702502 - | 50S ribosomal protein L28 TERM 632 702604 - 702616 + g 79 -4.1 -5.38549 | GCGTAAATTAGGGAG TAAGC GAC GCTTG TTTTTATTGTTTGCA hpaA 703608 - 702775 - | neuraminyllactose-binding hemagglutinin precursor TERM 633 703942 - 703956 + G 72 -2.1 -5.19879 | opp_overlap 703936 AAAAAGATACCCCTA CGATG GGCGG CATTG TTTTTGTCTTTGCAA mraY 703740 - 704801 + | phospho-N-acetylmuramoyl-pentapeptide-transferase TERM 634 704898 - 704926 + G 78 -5.3 -5.14682 | opp_overlap 704899 704902, overlap 704899 704900 TTTTTTGATGATAAA TTCACTTCATCTT TTA AAGATGGAGAGGG TTTTCTTTGTTATCC TERM 635 705509 - 705530 + G 70 -3 -5.06414 | gap 1, opp_overlap 705528, overlap 705509 AGCAATCCCTTCTAA CGC-CCTTT CTTTT AAGGGAGCG TTTTTATTAGACGCC TERM 636 705599 - 705587 - g 71 -4.1 -4.86385 | ATTTTTAAAAATAAA CCATC TAA AATGG CAAGATTATAAAGAA TERM 637 705811 - 705795 - g 76 -8.7 -3.83026 | opp_overlap 705795 705794 GGGGGCGATATTAAA GGGGTCA ATT TAACCCC CCTTTTTGAAGAGTT murD 704802 - 706070 + | UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase TERM 638 706106 - 706117 + T 73 -4.4 -5.0538 | opp_overlap 706106 706097 706116 TATAAGTTCTAAAAA TGCT CAAA AGCA TTTTTTAAAATAAAA TERM 639 706159 - 706142 - T 76 -8.5 -3.42319 | ATAAAATAATGAAGA GCTTGAT TTTA ATCAAGC GATAACCTCTTTTAA Hac_0814 706335 - 706171 - | hypothetical protein TERM 640 706251 - 706273 + g 85 -2.8 -5.78622 | opp_overlap 706251, overlap 706254 TCCCCTTAAGAGAAT GAGTTTTAAA AGC TTTAAAATCC TTTTTTTTAAAATAA Hac_0815 706585 - 706325 - | hypothetical protein Hac_0816 706976 - 706575 - | hypothetical protein TERM 641 706831 - 706813 - G 85 -7.4 -5.02074 | GCAGGGGTGAAAAAA TCCGCTTT GAT AGAGCGGA TGACAAACACGCCCT TERM 642 707581 - 707601 + G 76 -10.5 -2.57162 | overlap 707588 ATCTTTAATGATACC TTGCAATCC ATT GGGTTGCAA TCCGTTGGGCTTTTT Hac_0817 707182 - 708510 + | putative transmembrane transport protein fragment 708520 - 709383 + | COG0733R sodium-and chloride-dependent transporter fragment 1 TERM 643 709403 - 709424 + G 100 -9.5 -5.38054 | gap 1 CGCTGAAATGGGCAT GAGCG-GACA GAT TGTCTCGCTC TTTTTCTTTATAGCA fragment 709395 - 709847 + | COG0733R sodium-and chloride-dependent transporter fragment 2 TERM 644 710566 - 710584 + G 79 -8.8 -4.12738 | overlap 710568 TTGTCGTTCTGTGAG TGCAGGGC AGC GCCCTGTG TTTCGTTTGGTGTGG TERM 645 710568 - 710582 + G 85 -11.4 -3.65143 | overlap 710566 GTCGTTCTGTGAGTG CAGGGC AGC GCCCTG TGTTTCGTTTGGTGT TERM 646 710644 - 710685 + G 71 -8.2 -3.41051 | overlap 710653 TTATTGGCCTTATGT CCCTTATGATCAATCCAA CCCTAA TTTGATTGATTATATGGG TTATGGTAACGCTAA pldA 709862 - 710929 + | phospholipase A TERM 647 711738 - 711726 - g 76 -4.1 -5.1861 | overlap 711728 CTGATTATCAAAAAA TCCTC CCT AAGGA ATACGCGTCTTCTTT dnaN 710984 - 712108 + | DNA polymerase III subunit beta gyrB 712120 - 714441 + | DNA gyrase subunit B Hac_0823 714487 - 715479 + | hypothetical protein fragment 715499 - 715633 + | - hypothetical protein TERM 648 716087 - 716061 - g 70 -5.9 -4.27316 | gap 1 GTTTGGAATTGAAAA CCGCTACTCCCT TATT AGAGAG-AACGG CTACACTCAAAGAAC fragment 716000 - 716230 + | - hypothetical protein omp8 717008 - 716271 - | outer membrane protein 8 TERM 649 717490 - 717500 + H 72 -2.6 -5.47159 | overlap 717496 ATTGAGACAAAGGGG TTTT TTG AAAA TTTTTCTTTCTTGCA Hac_0827 717494 - 717820 + | hypothetical protein TERM 650 718013 - 718025 + G 71 -3.3 -5.04249 | opp_overlap 718022, overlap 718022 AGGCTTTGAGTAGGG GAGCT AAA AGCGC TTTGTTTTTTGAGCA Hac_0828 717799 - 718401 + | putative methylase fliL 718410 - 718961 + | flagellar basal body-associated protein FliL TERM 651 719019 - 719044 + G 91 -7 -5.24129 | opp_overlap 719019, overlap 719011 GAAAGGTGTGTGAAA CGCTTTAAAA TGAAGT TTTTAGAGCG TTTTTTATCGCCAAG acpS 718968 - 719315 + | 4'-phosphopantetheinyl transferase TERM 652 719304 - 719322 + T 74 -3.9 -5.25656 | overlap 719311 719313 GCGATAGCGGTTGTG GTTGTTT CTTAA AAACAGC TTTTTTAGTGGTTTT ligA 721306 - 719342 - | NAD-dependent DNA ligase LigA cheV 721381 - 722322 + | chemotaxis protein TERM 653 722435 - 722448 + G 79 -4.5 -5.24551 | opp_overlap 722435, overlap 722429 TAACACTTATAGAGA CCATG GGGG CGTGG TTTTTATTGATTTAA TERM 654 722900 - 722916 + G 70 -8.7 -3.14132 | AAGTAGGGTGCATGA GGGCGAA TTT TTTGCCC TTCCTCAAAGCCCGC aspS 722349 - 724103 + | aspartyl-tRNA synthetase TERM 655 724650 - 724632 - g 70 -6 -4.23045 | opp_overlap 724631 724632 GAAGCATTGAAGAAA TCGTGCAT GAA ATGCAAGA ATATATTTTGTCTTT adk 724100 - 724675 + | adenylate kinase TERM 656 725588 - 725576 - g 100 -2.6 -6.09133 | overlap 725580 GACTGCAAAAAAAAA GAGC GTGAA GCCC ACCTATTACCCACTC Hac_0835 724676 - 725725 + | putative lipopolysaccharide biosynthesis protein ppa 725780 - 726301 + | hypothetical protein TERM 657 726297 - 726287 - f 71 -5.4 -4.56887 | GAAAAAGCCATAAAA GCTT ATC AAGC CTAAAGATTTTAAAG TERM 658 726905 - 726891 - g 73 -4.2 -4.97824 | AAAAGGCAAATAAAA GCCTAT GAC ATGGGC ATTAAAAACTTTGAG Hac_0837 726399 - 726980 + | hypothetical protein TERM 659 727745 - 727725 - f 100 -7.7 -5.65513 | TATTAATTAAAAAAA GCATTCTTA ATC TAAAAATGC TACAATGCTTGTTTT TERM 660 728191 - 728202 + G 73 -4.4 -5.00616 | AAAAGCCATGACCGC TGCA GAAG TGCA TTTTTTAAGCGCCAA TERM 661 728806 - 728788 - g 70 -7.6 -3.66742 | TTTAGACAAAGAAGA TTTGATTT TTA AAATCAAA GATGCCGGATTTGTT Hac_0839 727784 - 728866 + | hypothetical protein TERM 662 729443 - 729429 - g 71 -6.4 -4.16279 | opp_overlap 729429, overlap 729421 729418 729441 TAGAGCATGCTAAAA CGGCTT TAA AAACCG CTTTAGAAGCGGAGG TERM 663 729455 - 729441 - g 89 -10 -4.58685 | opp_overlap 729429, overlap 729429 729421 729418 AAACGGCTTTAAAAA CCGCTT TAG AAGCGG AGGGCTATTATGGGA TERM 664 730823 - 730833 + G 70 -8.2 -3.38046 | overlap 730821 GTAGGGGAAACGCCA CCGG TTA CCGG TATTTGGGATAGGGA Hac_0840 728888 - 731632 + | protective surface antigen Hac_0841 731634 - 732695 + | hypothetical protein TERM 665 733934 - 733898 - g 72 -2.3 -5.22943 | overlap 733909 733913 ATCAAATCCAAAAAA TGAGTTTGAAAGAAATC AAT GATTTCATTAAAGCACA CACTGAAATCAATGA ymxG 732733 - 733992 + | processing protease TERM 666 735377 - 735393 + G 71 -6.6 -4.07687 | opp_overlap 735368 735367 AAAAGGCGCTAATCC TAGCGT GGTGA ACGCTA TTTTGAAAGAGAAAT gatB 733992 - 735416 + | aspartyl/glutamyl-tRNA amidotransferase subunit B Hac_0844 735416 - 736630 + | hypothetical protein TERM 667 736777 - 736767 - g 100 -2.6 -6.01725 | opp_overlap 736768, overlap 736768 AAGAAAAACAAAAAA TTTT TAC AAAA ATTCGCTCAAAATCA TERM 668 736812 - 736849 + G 70 -8.7 -3.07266 | gap 1, opp_overlap 736826, overlap 736817 GCTTATGTGAGTAGT GAAAATTTAGACGAGCTT TTA AAGCATG-CTAAATTTTC TAGTTTGATGTTTTT Hac_0845 736641 - 737648 + | hypothetical protein TERM 669 737779 - 737749 - g 70 -7.6 -3.57147 | overlap 737747 ATAAAGAAAAAATCA TCAGTGGGGGTGAA AAA TTCACCACCAATAA CCGCATGGAATTAAG rnhA 737649 - 738080 + | ribonuclease H rnc 738091 - 738795 + | ribonuclease III aroC 738792 - 739889 + | chorismate synthase Hac_0849 739926 - 740441 + | hypothetical protein TERM 670 740774 - 740791 + G 79 -4.1 -5.41746 | gap 1, opp_overlap 740766 GCACAATTCCACTAT GGT-GGTG GCA CGCCGACC TTTTTTTCGCCCATT TERM 671 741304 - 741284 - g 72 -4.7 -4.83169 | AGTTTTTTAGAAAAA GCCCATTAT CAA ATGATAGGC ATGGATCATTTCGCT hemN 740441 - 741814 + | coproporphyrinogen III oxidase TERM 672 741817 - 741807 - f 74 -6.8 -4.28018 | AACATTTCAGTAAAA CGCT ATG AGCG GAAATATTTTTGAAG TERM 673 741892 - 741856 - g 74 -8.9 -3.54129 | gap 1, opp_overlap 741856 741866 GATACTTGTGTTAAA TGCGCTAAATGCGTGC CAGGTT GCACG-ATTTATCGCA TTCATAAAGATGAGA TERM 674 741856 - 741892 + G 70 -8.9 -3.15544 | gap 1, opp_overlap 741856, overlap 741866 GATACTTGTGTTAAA TGCGCTAAATGCGTGC CAGGTT GCACG-ATTTATCGCA TTCATAAAGATGAGA TERM 675 742459 - 742475 + G 79 -8.7 -4.08216 | opp_overlap 742435 742450, overlap 742461 CCTAAACAAGAATGC TGCGCAG CTC CTGCGTA TTTTACCGGCGATAA TERM 676 742461 - 742473 + G 74 -9.1 -3.63922 | opp_overlap 742435 742450, overlap 742459 TAAACAAGAATGCTG CGCAG CTC CTGCG TATTTTACCGGCGAT glpC 741811 - 743106 + | glycerol-3-phosphatedehydrogenase Hac_0852 743107 - 744075 + | hypothetical protein Hac_0853 744082 - 744849 + | hypothetical protein omp9 745060 - 745872 + | outer membrane protein 9 TERM 677 745884 - 745909 + F 74 -7.7 -3.91897 | overlap 745885 CTGAGATTTGTTTTT TCTCTAATTGA ATTT TCAATTAGAGC TTTCTCCATGAGCCA TERM 678 745885 - 745908 + F 83 -11.2 -2.94924 | overlap 745884 TGAGATTTGTTTTTT CTCTAATTGA ATTT TCAATTAGAG CTTTCTCCATGAGCC TERM 679 745932 - 745952 + F 77 -4.1 -5.43866 | overlap 745927 ATGAGCCACCGCTTT CTTTTGAAG CAT TTTTAAAAG TTTTTTTGAAAATTA TERM 680 746507 - 746489 - g 70 -8.2 -3.37259 | overlap 746487 746498 AATCACCCCTAAACA GCTTAAAG ACG CCTTAAGC CCTAAAACGAAAATG TERM 681 746959 - 746947 - g 70 -4.9 -4.66609 | TAGCCCACGCAAAAA TCAAT GCA ATTGA AGGATTGAATGCTTT aspB 746025 - 747197 + | aspartate aminotransferase Hac_0857 747335 - 747505 + | hypothetical protein xerD 747557 - 748642 + | integrase-recombinase protein dat1 749202 - 748687 - | methylated-DNA--protein-cysteine methyltransferase TERM 682 748892 - 748910 + g 75 -2.4 -5.46706 | overlap 748893 GGGTTATTAATGAGC TTTGCGAT TTC ATCGTAAC TTTTTATTTTACCAT Hac_0860 749990 - 749223 - | hypothetical protein TERM 683 750025 - 749997 - R 79 -8.3 -4.10188 | overlap 750016 GATATCCATAAACAA CCTTTAAAGAAGT AAA ACCTCTCTAAAAG AAAATTAAAAAGGAA wbpB 750991 - 750047 - | lipopolysaccharide biosynthesis protein wbpB nrdA 753419 - 751053 - | ribonucleotide-diphosphate reductase subunit alpha glmU 754818 - 753517 - | glucosamine-1-phosphate N-acetyltransferase TERM 684 753696 - 753714 + g 73 -4.6 -4.87389 | CTATAAAGACATTTT CACCAA TGATCGT TTGGTG TTTCTTTTTGCCATC TERM 685 755104 - 755116 + G 75 -7.7 -4.03782 | TAATCTTAGTGATGA CGAGT TTC ACTCG TTTGATTGTGGTGTT fliP 754914 - 755660 + | flagellar biosynthesis protein FliP TERM 686 755696 - 755670 - T 93 -9.5 -4.59773 | opp_overlap 755668, overlap 755672 GTGTAGCGTTAAAAA CATTCAAGCCA AAAAA TGGCTTGAAAG GGATTTAAAATTCAT TERM 687 755694 - 755672 - T 89 -10.7 -3.91506 | opp_overlap 755668, overlap 755670 GTAGCGTTAAAAACA TTCAAGCCA AAAAA TGGCTTGAA AGGGATTTAAAATTC fecA 758004 - 755701 - | iron(III) dicitrate transport protein TERM 688 758119 - 758136 + r 95 -8.5 -4.94058 | AATTAAAGGGTTATC GCTTGAT TAAA ATCAAGC TTTTATTTGAATTCC feoB 760081 - 758153 - | ferrous iron transport protein B TERM 689 760099 - 760113 + H 100 -5.8 -5.9218 | TGAATTTATTCTCCA TTAAAG TTT CTTTAA TTTTTTTGTTATATA TERM 690 760968 - 760957 - g 71 -4.4 -4.83615 | GATTTTTTAGAAAAA TTCC CCAA GGAA AAATCTTATTCGAGC Hac_0867 760216 - 761028 + | hypothetical protein TERM 691 761184 - 761206 + G 82 -8.5 -4.32919 | gap 1, opp_overlap 761183 761184 761186, overlap 761184 761187 AACCACGCCAAGAAG CACCGCTTGC ATCT GCAAGCG-TG TATTTTTTCTCGTTT TERM 692 761184 - 761208 + G 82 -5 -5.43621 | gap 1, opp_overlap 761183 761184 761186, overlap 761184 761187 AACCACGCCAAGAAG CAC-CGCTTGC ATCT GCAAGCGTGTA TTTTTTCTCGTTTCT TERM 693 761187 - 761204 + G 84 -11.3 -3.7314 | opp_overlap 761186 761184 761183, overlap 761184 761184 CACGCCAAGAAGCAC CGCTTGC ATCT GCAAGCG TGTATTTTTTCTCGT fragment 761116 - 761244 + | - hypothetical protein fragment 761287 - 761430 + | - hypothetical protein Hac_0870 762384 - 761563 - | hypothetical protein Hac_0871 763346 - 762381 - | hypothetical protein TERM 694 762903 - 762887 - G 70 -5.1 -4.67038 | opp_overlap 762894 762895 CCCCTAAAACTAAAA CAAAGGG TTT CCATTTG GAAGATTTTTTGGAC Hac_0872 764041 - 763358 - | putative rRNA methylase Hac_0873 764917 - 764054 - | putative methylase rpmE 765145 - 764942 - | 50S ribosomal protein L31 TERM 695 765470 - 765453 - g 78 -6.9 -4.39571 | opp_overlap 765453 765452 CGCACAAAGTCAAAA CGCACAC GCCA GTGAGCG GTTATCACATTGAAG rho 765407 - 766723 + | transcription termination factor Rho murI 766758 - 767525 + | glutamate racemase Hac_0877 767537 - 768370 + | hypothetical protein glnA 769990 - 768545 - | hypothetical protein TERM 696 768722 - 768740 + g 77 -6.7 -4.6468 | overlap 768708 TCTCCTTAGAGTATG GGGCATT TGTTT GATGCCC TTTTCTCTGATTTCA Hac_0879 770210 - 771115 + | hypothetical protein fragment 771156 - 771365 + | COG1479S hypothetical protein fragment 771590 - 772270 + | COG1479S,COG3586S hypothetical protein TERM 697 772449 - 772439 - g 78 -3.2 -5.45652 | ATCGCCAACAAAAAA GCCA AAC TAGC CACTAACGAAGTGAT rplI 772334 - 772783 + | 50S ribosomal protein L9 hslV 772787 - 773329 + | ATP-dependent protease peptidase subunit TERM 698 773983 - 773969 - g 83 -3.6 -5.59564 | overlap 773955 773971 ATAAAGTCAAAAAAA CTTTAA GCG TCAAAG AGGCTAAAGAAGCCC hslU 773329 - 774660 + | ATP-dependent protease ATP-binding subunit TERM 699 775478 - 775467 - g 85 -3 -5.75342 | GTGGGCGAAAAAAAA GTTT TTTT AAAC TTGCAAGTGATCGCT era 774660 - 775565 + | GTP-binding protein Era Hac_0886 775562 - 776554 + | hypothetical protein Hac_0887 776837 - 777124 + | hypothetical protein Hac_0889 777826 - 778002 + | hypothetical protein Hac_0890 778039 - 778335 + | hypothetical protein TERM 700 778494 - 778520 + F 74 -9.6 -2.70232 | opp_overlap 778489, overlap 778492 TATTATGACAGCTTG TTAGAAAGCG ATACATA CGCTTTCTAA TCATCTCGTGTTGCA Hac_0891 778528 - 778827 + | hypothetical protein Hac_0894 780529 - 780404 - | hypothetical protein Hac_0895 780763 - 780978 + | hypothetical protein dapB 781964 - 781200 - | dihydrodipicolinate reductase glcD 783364 - 781985 - | glycolate oxidase subunit TERM 701 782911 - 782921 + g 71 -6.8 -4.08692 | ATTTGGCCGCACGCA TGCC ACC GGCA TTTTCAGCGACATTC Hac_0899 784615 - 783368 - | hypothetical protein TERM 702 784028 - 784004 - G 79 -2.1 -5.63504 | AACTCTAGAAAAAAA CGGCGTG GAAGTTTTAGT CACACCG CTTGTATCCAACGCT Hac_0900 785261 - 784626 - | hypothetical protein Hac_0901 786484 - 785261 - | hypothetical protein Hac_0902 786646 - 787923 + | hypothetical protein TERM 703 787937 - 787949 + F 75 -4.9 -5.00884 | AAGATCTTAATATTT TCATT TTT AATGA TTTTTTAAGAAAGAT hofE 788005 - 789372 + | hof family outer membrane protein TERM 704 789351 - 789363 + T 72 -2.7 -5.41143 | opp_overlap 789343 789338, overlap 789343 GAGCAATCTCATGGT GAGTT TGA AATTC TTTTTTTAAACCCTA Hac_0904 789906 - 789379 - | hypothetical protein TERM 705 789669 - 789686 + g 80 -6.3 -5.14965 | opp_overlap 789669 789680 GTTTAGGCTCTAAAA TCAAGCG TAAA TGCTTGA TTTTTTCATGCAAAT TERM 706 789875 - 789865 - G 100 -8.2 -5.19275 | opp_overlap 789864 ACTGACAAAATAAAA GGGC AAC GCCC ACTTTCTAAAATGAG lolA 790930 - 790376 - | outer-membrane lipoprotein carrier protein TERM 707 792086 - 792098 + G 70 -7.7 -3.55444 | opp_overlap 792097 GGCGATTTAGTGAGG GCTTG CAT CAAGC TTTAGAGGCTAAAGA TERM 708 792457 - 792445 - g 71 -3.3 -5.08824 | GCTTTACTCAAAAAA GAGCG TAT CCCTC ACACCGTTTTAAACG secA 791065 - 793662 + | preprotein translocase subunit SecA TERM 709 794084 - 794059 - g 73 -4.1 -5.02074 | overlap 794061 CGACGCTTTAAAAAA TATTGATGAAA AAGA TCTCATCAAAA ACCCTTTTAGTTTGA TERM 710 794082 - 794061 - g 71 -6.7 -4.13963 | overlap 794059 ACGCTTTAAAAAATA TTGATGAAA AAGA TCTCATCAA AAACCCTTTTAGTTT Hac_0907 793652 - 794884 + | putative integral membrane protein TERM 711 794967 - 794950 - f 76 -8.5 -3.41222 | GGTTAATGCCAAAGA GCTTGAT TTTA ATCAAGC GATAGTTTCTTAAAA TERM 712 796188 - 796204 + G 93 -5.1 -5.69068 | ATTTGGAATTATAAG GGTTGGA GCA TTCAGCC TTTTTTCTATTTTTC hofF 795354 - 796853 + | hof family outer membrane protein TERM 713 796884 - 796870 - T 76 -8.6 -3.50853 | opp_overlap 796870 796869 CCCCTTTAATGATAA CCCTTT TTA AAAGGG CTTGTTGGAACACCT TERM 714 797205 - 797222 + T 76 -8.5 -3.44353 | TTTTAATAAACTATC GCTTGAT TAAA ATCAAGC TCTTTAAAATTATTT TERM 715 797242 - 797276 + T 83 -9.6 -3.91072 | TAAAATTATTTTATT GATTTTGAAAAATACT TTT AGCATTTTTTAAAATC TTTATGGGGATTTAG fragment 797747 - 797259 - | COG0732V hypothetical protein TERM 716 797319 - 797334 + g 73 -2.6 -5.28778 | CAATAATTTTTCTCG GTAATA CTCG TATTGC TTTTTTCTCGCTCCT fragment 797854 - 797759 - | - hypothetical protein fragment 797898 - 797806 - | - hypothetical protein yvgW 800007 - 797947 - | heavy metal-transporting ATPase TERM 717 799768 - 799756 - G 74 -6.3 -4.57341 | AATCGCGCCTAAAAA GACAA TAA TTGTC GTAATGAGTGGGGTA Hac_0914 801552 - 800032 - | sigma-54 interacting protein TERM 718 800396 - 800407 + g 71 -3.6 -4.96762 | opp_overlap 800394 CTATCCAAAAAAGGC TCGC TCAA GCGG TTTTTATACTGTGTG TERM 719 800641 - 800628 - G 90 -2.4 -5.86965 | ATTCATCAAAAAAAA GCAT GCCGTT ATGC GCTAATGCGATTTCG def 802082 - 801555 - | peptide deformylase clpP 802674 - 802087 - | ATP-dependent Clp protease proteolytic subunit tig 804049 - 802694 - | trigger factor omp10 804996 - 804163 - | outer membrane protein 10 hpaA 805811 - 805029 - | neuraminyllactose-binding hemagglutinin precursor TERM 720 805943 - 805963 + r 74 -5.5 -4.83615 | TAGCCGTTTGGATTG CCTTTAAAA CTC TTTAAAAGG TTTTTATAGCAAATG ribA 806545 - 805967 - | GTP cyclohydrolase II Hac_0921 807565 - 807137 - | hypothetical protein Hac_0922 808013 - 807567 - | hypothetical protein Hac_0923 808839 - 808024 - | hypothetical protein ribA 809958 - 808924 - | bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein Hac_0925 810883 - 810038 - | putative lipopolysaccharide biosynthesis protein TERM 721 810262 - 810274 + g 76 -4.8 -5.04385 | opp_overlap 810262 CCATCACGCAATCTA TGGG CATAA CCCA TTTTTTCGCACTGTA TERM 722 811310 - 811300 - g 78 -5.4 -5.03145 | TAATCGCGCAAAAAA TGCA AAC TGCA TACACCGGTTTTAAT Hac_0926 810963 - 811583 + | putative metalloprotease uvrA 814459 - 811634 - | excinuclease ABC subunit A TERM 723 813091 - 813101 + g 100 -5.4 -5.84381 | opp_overlap 813091 TTTCTTTTAAAATAG GATC AGC GATC TTTTTTTCTTGCTCG TERM 724 814273 - 814253 - G 74 -6.1 -4.57073 | CACTTTGTCTAAAAA TTGCCTTGC ATA GCTAGACAA ACTCTCTAAATAGCG omp11 814638 - 815459 + | outer membrane protein 11 TERM 725 815600 - 815617 + G 93 -9.9 -4.91712 | TTTTGCAAGCGTTCG CCCCTTT AGAA AAAGGGG TTTTTATAGATTGCA mraW 815539 - 816465 + | S-adenosyl-methyltransferase MraW Hac_0930 816486 - 816830 + | hypothetical protein TERM 726 816964 - 816954 - f 78 -6.8 -4.49389 | ATGGTATAATCAAAA GGCT AAA AGCC CATAAAAGTTAATCA TERM 727 817854 - 817836 - g 87 -8.2 -4.84017 | AATTTCGCACAAAAA CACCAAAT TAA ATCTGGTG CTGACTGGAATATTG Hac_0932 816990 - 817892 + | hypothetical protein TERM 728 817930 - 817914 - f 87 -10.1 -3.88001 | TTTTAGAAAAATTAA GGGGCGT GAA ACACCCC AACAGCTAAATACGA TERM 729 818137 - 818149 + G 74 -9.1 -3.46647 | opp_overlap 818137 818129 818126, overlap 818135 CAAACAAGCTCATAA GGCGA TGA TCGCC TATTTGCTCGCTAAA TERM 730 818149 - 818137 - g 74 -9.1 -3.4082 | opp_overlap 818135 818137, overlap 818129 818126 CAAACAAGCTCATAA GGCGA TGA TCGCC TATTTGCTCGCTAAA Hac_0933 817964 - 819208 + | hypothetical protein fragment 819245 - 819343 + | - hypothetical protein fragment 819363 - 819764 + | COG3177S hypothetical protein fragment 819761 - 819856 + | - hypothetical protein rpoN 821189 - 819945 - | RNA polymerase factor sigma-54 yhbG 821914 - 821192 - | ABC transporter, ATP-binding protein Hac_0939 822328 - 821927 - | hypothetical protein TERM 731 822002 - 822012 + g 76 -2.6 -5.47914 | AATAGCTAAATCGTA TTTT TTT AAAA TTTTTTCTAATTTTT dnaX 824055 - 822325 - | DNA polymerase III subunits gamma and tau TERM 732 822907 - 822920 + g 71 -4.5 -4.77036 | overlap 822900 822907 TGGCGTTTGTGGGGC CTCCA CTAT TGGGG TTTTTAGTGGTGGGG TERM 733 823040 - 823056 + g 82 -9.5 -4.05629 | opp_overlap 823039, overlap 823028 823049 ATCGCATCATCTAAT GCTTTGA GTT TCAAAGC TTCTTTAAATTTCAT omp12 824508 - 824254 - | - - outer membrane protein 12 fragment 5 omp12 824639 - 824505 - | - - outer membrane protein 12 fragment 4 omp12 824933 - 824724 - | - - outer membrane protein 12 fragment 3 TERM 734 825027 - 825041 + r 71 -8.6 -2.92246 | CGTTTAGATTGACAT TCCCTT TGA AAGGGA TATCATTGGGATTGG omp12 825230 - 825081 - | - - outer membrane protein 12 fragment 2 omp12 825721 - 825227 - | - - outer membrane protein 12 fragment 1 dcuA 827624 - 826296 - | anaerobic C4-dicarboxylate transporter TERM 735 826664 - 826651 - G 71 -3.1 -5.14563 | gap 1 TCTGCGATCAAAAAA GAAGCG TAG CGCT-C GATTTCATTTAAATG ansB 827703 - 828755 + | L-asparaginase II TERM 736 828907 - 828876 - T 89 -12.6 -2.63715 | opp_overlap 828880 828885, overlap 828880 828885 AGCGATCTTATAGCA CAAATTAAACGGAT AAAA ATCCGTTTAATTTA AACCTTGCTTTTTAT TERM 737 828903 - 828880 - T 93 -11.2 -4.01888 | opp_overlap 828880 828885, overlap 828876 828885 ATCTTATAGCACAAA TTAAACGGAT AAAA ATCCGTTTAA TTTAAACCTTGCTTT TERM 738 828880 - 828903 + T 89 -11.2 -3.6288 | opp_overlap 828880 828876 828885, overlap 828885 ATCTTATAGCACAAA TTAAACGGAT AAAA ATCCGTTTAA TTTAAACCTTGCTTT TERM 739 828898 - 828885 - T 74 -6.7 -4.16785 | opp_overlap 828880 828885, overlap 828880 828876 ATAGCACAAATTAAA CGGAT AAAA ATCCG TTTAATTTAAACCTT TERM 740 828885 - 828898 + T 71 -6.7 -4.06903 | opp_overlap 828885 828880 828876, overlap 828880 ATAGCACAAATTAAA CGGAT AAAA ATCCG TTTAATTTAAACCTT Hac_0949 829479 - 828979 - | hypothetical protein hyuB 831805 - 829508 - | N-methylhydantoinase B TERM 741 830257 - 830243 - G 73 -2.8 -5.28778 | overlap 830256 ATTACCCATAAAAAA CATGGT CCA ATCATG TGCACCCCACACCAT TERM 742 831747 - 831766 + g 70 -5.8 -4.24443 | gap 1, overlap 831742 831744 GTTTTTTCTGTCCTA GCTAG-GAT TTC ATCTCTAGC TTGTTTTAAAGTTTT hyuA 833964 - 831823 - | N-methylhydantoinase A TERM 743 833406 - 833416 + g 81 -6.8 -4.88388 | CTCTAACGATCCGCT CGCT TTC AGCG TTTTTATGAGATTGT Hac_0953 835197 - 834199 - | putative outer membrane protein TERM 744 834383 - 834356 - G 73 -9.2 -2.93357 | opp_overlap 834355 834360, overlap 834360 AAGTATTCTAAATGA GCAATACCCCTA GTTT CAGGGCTATTGC CTTGAATGAATATAT atoE 836696 - 835332 - | short-chain fatty acids transporter TERM 745 835855 - 835844 - G 73 -4.4 -4.94243 | opp_overlap 835844 CTAAAAAAAGGAAAA TCGT ATTG ACGA TATTTAAACTAAGTC scoB 837342 - 836719 - | 3-oxoacid CoA-transferase subunit B scoA 838037 - 837339 - | 3-oxoacid CoA-transferase subunit A atoB 839223 - 838048 - | hypothetical protein Hac_0959 839490 - 840518 + | hypothetical protein TERM 746 840867 - 840883 + G 75 -6.6 -4.44448 | GGCTTTTATTTGGGG GCGTTA TCTTT TAACGC TTTATTTGAAGTAAT dgkA 840511 - 840897 + | hypothetical protein gyrA 840917 - 843412 + | DNA gyrase subunit A Hac_0962 843412 - 843885 + | hypothetical protein Hac_0963 843882 - 845027 + | response regulator Hac_0965 845306 - 845665 + | hypothetical protein Hac_0966 846537 - 846004 - | methylase lepA 848360 - 846546 - | GTP-binding protein LepA TERM 747 846633 - 846644 + g 73 -3 -5.32396 | CTTGCCTTCTTTTTG CTTT TCTA AAAG TTTTCTTTTTCGTGT dxs 850207 - 848357 - | 1-deoxy-D-xylulose-5-phosphate synthase TERM 748 849281 - 849297 + g 81 -6.5 -4.94243 | overlap 849283 AGAATAGATTTCAGT GGGCGAT AAA ATCGCGC TTTTAGTTTTTTTAG TERM 749 849533 - 849521 - G 71 -3.3 -5.03145 | TAATTCTTCAAAAAA CACGC CTG GGGTG ATGAGTTTAAAAGAT fliH 850962 - 850210 - | flagellar assembly protein H TERM 750 850446 - 850474 + g 73 -8.1 -3.6947 | opp_overlap 850458, overlap 850455 TTTTTAATAGCTCTT CAGCCAAAGCGAG AGC CACTTTTTGGCTG TTGTCTTCCACTTCT TERM 751 850564 - 850574 + g 76 -4 -5.21709 | CATTAAATGATTTTC TGAA CTT TTCA TTTTTTCATCTAAAG fliG 852004 - 850973 - | flagellar motor switch protein G fliF 853747 - 852044 - | flagellar MS-ring protein TERM 752 852439 - 852452 + g 70 -8.1 -3.37796 | TATGCATGATTTTTT CGCCA AAAG TGGCG TTATCAATCGTAGGG TERM 753 852828 - 852838 + g 100 -3.2 -6.17268 | overlap 852819 CCGACTTGCTTTTTA GGAG CAC CTTC TTTTTTTTCTTCTAA TERM 754 853426 - 853452 + g 79 -8 -4.25458 | CTTTACTCGTTTTAG GGATCCCTTGAG AAG CTAAAGTGATCC TTTCTTCATAGACTT TERM 755 853652 - 853637 - G 70 -2.5 -5.17744 | overlap 853639 853640 ATAGAGCAATAAAAA CACGA TCAAAG CCGTG ATCAAAACCCCCATT Hac_0972 854464 - 853796 - | hypothetical protein TERM 756 854675 - 854687 + H 76 -6.3 -4.67168 | opp_overlap 854675, overlap 854667 TTGCCCTCTTTTAAA GCTTT TTA AAAGC TTTTTAACCCTTTTT pyrG 854746 - 856362 + | CTP synthetase TERM 757 856864 - 856874 + G 71 -3.2 -5.03227 | AAGAAGTGTGTGGGG CGTT AGT AGCG TTTTATTTGTGCTAT TERM 758 857789 - 857805 + G 77 -6.5 -4.65933 | opp_overlap 857791, overlap 857791 TTTTAAGGATGAAGA AAGCGTC AAA GACGCTA TTTATTTTAACGCTG TERM 759 857791 - 857803 + G 79 -9.1 -3.93868 | opp_overlap 857791, overlap 857789 TTAAGGATGAAGAAA GCGTC AAA GACGC TATTTATTTTAACGC TERM 760 857803 - 857791 - g 83 -9.1 -4.29227 | opp_overlap 857789 857791 TTAAGGATGAAGAAA GCGTC AAA GACGC TATTTATTTTAACGC recJ 856371 - 857921 + | single-strand DNA-specific exonuclease Hac_0975 857921 - 858802 + | putative ribosomal pseudouridine synthase Hac_0976 860022 - 858811 - | hypothetical protein Hac_0977 860804 - 860019 - | hypothetical protein TERM 761 860725 - 860715 - G 79 -4 -5.34655 | TAAGGAAAAACAAAA CTTA TCG TAAG TCAAACACCATAAAC fragment 861024 - 860782 - | - hypothetical protein fragment 861194 - 861030 - | COG3326S hypothetical protein TERM 762 861183 - 861204 + g 73 -7.4 -4.07568 | opp_overlap 861182 AATAGAAAAAAATTC CACTCTTA CCACCT TAAGAGTG TTTTAACAACCCAAA Hac_0981 861503 - 861661 + | hypothetical protein Hac_0982 862419 - 861877 - | hypothetical protein Hac_0983 862759 - 862421 - | hypothetical protein Hac_0984 863505 - 862876 - | hypothetical protein Hac_0986 864162 - 863758 - | Holliday junction resolvase-like protein dprA 864959 - 864159 - | DNA processing protein DprA minE 865199 - 864966 - | cell division topological specificity factor MinE minD 866002 - 865196 - | cell division inhibitor TERM 763 865787 - 865802 + g 71 -4 -4.87665 | ATCCACGATTAACGC TTGCGA AAGG TTGCAA TTTTTCTCCATCACA ilvC 867017 - 866025 - | ketol-acid reductoisomerase TERM 764 866171 - 866182 + g 70 -3 -5.10497 | ATGAGCCGTTTTGAA TCTT TTTT AAGA TTTTTTGCATGCGTT nadE 867273 - 868055 + | NH(3)-dependent NAD+ synthetase flaG 869465 - 868923 - | flagellar protein G lpxK 868052 - 868990 + | tetraacyldisaccharide 4'-kinase TERM 765 869158 - 869178 + gT 83 -6.9 -4.87665 | opp_overlap 869176 TTTAAAATAGTATCC CCCTTATTT TTT AAAAAAGGG TTTTTATAAATCCCC TERM 766 869192 - 869176 - GT 76 -5.1 -5.02074 | opp_overlap 869158 TTATTTTTTAAAAAA GGGTTTT TAT AAATCCC CAAATACCCATGCTT neuA 870313 - 869462 - | - COG3980M CMP-N-acetylneuraminic acid synthetase fragment 2 neuA 871008 - 870319 - | - COG1083M CMP-N-acetylneuraminic acid synthetase fragment 1 TERM 767 870658 - 870670 + g 89 -6.3 -5.60993 | opp_overlap 870657 870669 TAAAGTCTCAAAAGC GCATT GTA AATGC TTTTTTTGTAAAAAA flgH 871730 - 871032 - | flagellar basal body L-ring protein TERM 768 872102 - 872087 - g 73 -4 -5.16237 | gap 1 AATGGCATTAAAAAA CTCACCA ACA TGG-GAG CCAATGGGATTGGCT TERM 769 872102 - 872116 + G 74 -8.6 -3.45386 | CTCACCAACATGGGA GCCAAT GGG ATTGGC TTGGTTATGGGCTAT omp13 871856 - 872596 + | outer membrane protein 13 Hac_0998 873145 - 872603 - | putative endonuclease TERM 770 873605 - 873592 - g 89 -6.7 -5.41746 | AATCCTTCAAAAAAA GTTGG GTTT CCAAC CTGGCAAATCAGAAC Hac_0999 873254 - 874555 + | hypothetical protein TERM 771 874897 - 874883 - g 70 -5 -4.61231 | TGAGAGTCTTAAAAA GCATTA CCC TAACGC ATGCTCAGTCTTTAT gmk 874566 - 875168 + | guanylate kinase Hac_1001 875239 - 875478 + | putative sec-independent protein translocase protein TERM 772 876874 - 876833 - g 71 -3.9 -5.01732 | gap 1, opp_overlap 876843, overlap 876839 AACCCCTTTAAAAAA CCTAAA-CGCCGAAGAAAAA TAT CTTCTCTTTAGCGCTTTAAG CTTACCTAAAATCAT argS 875481 - 877106 + | arginyl-tRNA synthetase TERM 773 877154 - 877144 - f 71 -5.4 -4.62069 | opp_overlap 877144 CGTTGATTTTAAAAA TGCT TTA AGCA TTTTTGCAATCAAAC TERM 774 877144 - 877154 + F 71 -5.4 -4.62069 | opp_overlap 877144 CGTTGATTTTAAAAA TGCT TTA AGCA TTTTTGCAATCAAAC Hac_1003 877313 - 878068 + | hypothetical protein TERM 775 878123 - 878106 - f 95 -8.5 -5.28315 | ATAAAATGCAAAAAA GCTTGAT TTTA ATCAAGC GATCATCTCTTAGAG omp14 878629 - 879066 + | - - outer membrane protein 14 fragment 1 omp14 879682 - 879912 + | - - outer membrane protein 14 fragment 2 TERM 776 879990 - 880000 + F 83 -6.8 -4.84359 | GCCAAGTGGATGCGG CGGA TTT TCCG TTTTTATCCAACTCG TERM 777 880209 - 880225 + F 76 -7.2 -4.21922 | TAAGCTCCCTTTTAG CCCCTC TTGTT GGGGGG TTTAGTTTTCACTGC narK 880409 - 880993 + | - COG0477GEPR nitrite extrusion protein fragment 1 narK 881001 - 881555 + | - COG0477GEPR nitrite extrusion protein fragment 2 TERM 778 881569 - 881583 + T 71 -2.2 -5.49579 | opp_overlap 881556, overlap 881571 AGCAAAAATAGGATT TTTAAA TTT TTTAGA TTTTATTTTTTATAA Hac_1014 882722 - 881745 - | putative cobalamin synthesis protein TERM 779 882531 - 882547 + g 73 -3.7 -5.14965 | opp_overlap 882524 882545 ACAACACACACACCC TGCGTTA AGA TAAAGCA TTTTTTCATCGCAAT Hac_1015 883084 - 882722 - | hypothetical protein TERM 780 882947 - 882957 + g 73 -6.8 -4.34267 | CAATCCCACCCGTTT GAGC CTC GCTC TTTTGCGTTCTCTGA TERM 781 883006 - 882994 - G 72 -7.7 -3.75738 | opp_overlap 882984 882983 CATTAGCACTAATAA GTGCA TTT TGCAC TCTCAAACTCCCACT TERM 782 883956 - 883985 + G 77 -9.2 -3.41302 | opp_overlap 883937, overlap 883955 TGCAAATACTGCACT TGGGGAAGCTGG AAAAGC CCTGCTGCCCCA TATTTAAAATATTCG Hac_1016 883248 - 884372 + | hypothetical protein Hac_1017 884369 - 885061 + | restriction endonuclease TERM 783 885088 - 885065 - T 76 -9.7 -3.15544 | opp_overlap 885075, overlap 885075 GTTTATTTGTAGCAA TTGGTGCAA ATTGCA TTGCACCAA TGCGATTCAATCGTT TERM 784 885075 - 885093 + T 70 -8.2 -3.15252 | opp_overlap 885065 885075, overlap 885091 AGCAATTGGTGCAAA TTGCATTG CAC CAATGCGA TTCAATCGTTACTTT Hac_1018 885983 - 885102 - | putative polysaccharide deacetylase TERM 785 885178 - 885196 + g 70 -2.5 -5.1675 | CGCACGCCCTCATGC TTATTGA TATGT TCAATGA TTTTTTCATGCATGA Hac_1019 886829 - 885996 - | hypothetical protein Hac_1020 887388 - 886996 - | hypothetical protein TERM 786 887096 - 887086 - G 71 -6.8 -4.14652 | opp_overlap 887086 ATTAAAAAGATTAAA CGCT AGA AGCG TTCCTAAAATGCCTA Hac_1021 887661 - 887401 - | hypothetical protein hemL 888958 - 887666 - | glutamate-1-semialdehyde aminotransferase TERM 787 888492 - 888477 - G 79 -7.6 -4.26019 | GAAGGAGAGCCAAAA GTAGTG CACC CACTAC CCGCTTTCACTAACA Hac_1023 889522 - 888968 - | hypothetical protein TERM 788 889332 - 889344 + g 70 -4.8 -4.652 | ATGCTCGCATTCGCC CCCT CTAAA AGGG TTTTTAAACTGCTTT Hac_1024 890663 - 889650 - | hypothetical protein TERM 789 889808 - 889794 - G 70 -5.8 -4.34263 | opp_overlap 889801 TTCTAATAACACAAA CAAAAA AGC TTTTTG AGCCTTGTCGTCTTC Hac_1025 891125 - 890673 - | SPOUT methyltransferase superfamily protein TERM 790 890760 - 890738 - G 79 -7.8 -4.30995 | overlap 890740 GCTCGCATAAAACAA TCTTAGCCAC TTC ATGGCTAAAA GTCATCTCGCTCAAA accD 892008 - 891139 - | acetyl-CoA carboxylase subunit beta TERM 791 891683 - 891695 + g 76 -2.6 -5.38348 | CTGATCACGGAGCTT GGGC GGTTA GTCC TTTTTTCGTATTTTT TERM 792 892624 - 892600 - g 93 -11.6 -4.35524 | opp_overlap 892600 GTTTGAAAGCTAAAA GCTTGGATTT AGAAA AAATCCAAGC TTTTTTTCGCACTCA TERM 793 892600 - 892624 + G 100 -11.6 -5.42259 | opp_overlap 892600 GTTTGAAAGCTAAAA GCTTGGATTT AGAAA AAATCCAAGC TTTTTTTCGCACTCA Hac_1027 892092 - 892706 + | hypothetical protein TERM 794 893352 - 893333 - g 70 -2.8 -5.10933 | overlap 893334 893335 GTATCCAAAATAAAA GCGTAGAG CATG CTCTAAAC ATGCTCACTAGGATT Hac_1028 892717 - 893373 + | hypothetical protein Hac_1029 893941 - 893375 - | hypothetical protein Hac_1030 894631 - 893999 - | oxygen-insensitive NADPH nitroreductase lgt 895482 - 894631 - | prolipoprotein diacylglyceryl transferase rluA 896219 - 895491 - | putative ribosomal pseudouridine synthase kdtA 897373 - 896237 - | 3-deoxy-D-manno-octulosonic-acid transferase Hac_1034 898183 - 897419 - | hypothetical protein Hac_1035 898924 - 898193 - | hypothetical protein TERM 795 898936 - 898963 + r 93 -10 -4.57882 | gap 1, opp_overlap 898942 CCATTTTAAGCCTTT GAGA-GAGCGTTT TTC AAGCGCTCTTCTC TTTCTTCTTCTTGCC glyQ 899822 - 898926 - | glycyl-tRNA synthetase subunit alpha gpsA 900771 - 899833 - | NAD(P)H-dependent glycerol-3-phosphate dehydrogenase fragment 901600 - 901295 - | - hypothetical protein fragment 902173 - 901658 - | COG0699R hypothetical protein fragment 902609 - 902136 - | - hypothetical protein fragment 902934 - 902641 - | - hypothetical protein fragment 903118 - 902921 - | - hypothetical protein TERM 796 903016 - 903028 + g 73 -2.7 -5.27335 | overlap 903009 ACAATTGAGAAAAGA CTTTA TCG TAGAG TTTTTCTTTAAAACC fragment 903389 - 903147 - | - hypothetical protein fragment 903931 - 903422 - | - hypothetical protein TERM 797 903582 - 903596 + g 74 -8.6 -3.49482 | overlap 903580 TCTTTTTCTTTGGTA GCGTTT TCT AAACGC TCTTTAATCGTGTCC fragment 904256 - 903954 - | COG0486R hypothetical protein fragment 904417 - 904301 - | - hypothetical protein fragment 904874 - 904443 - | COG0699R hypothetical protein fragment 905076 - 904939 - | - hypothetical protein fragment 905184 - 905092 - | - hypothetical protein fragment 905909 - 905352 - | - hypothetical protein fragment 906281 - 906177 - | - hypothetical protein vapD 906743 - 906507 - | virulence associated protein D Hac_1053 907144 - 906863 - | hypothetical protein Hac_1054 910220 - 907161 - | heavy metal cation efflux protein TERM 798 909572 - 909582 + g 73 -6.8 -4.25681 | CCCTATCCACGCGCC CAGC TCC GCTG TTTCTTAAATTCACT TERM 799 910043 - 910064 + g 85 -10.1 -4.18697 | TATTGTTTTCCATTT CTTCAGGGC TAGA GCCCGGAAG TTTTAAAATGATTTT nccB 911284 - 910220 - | cobalt-zinc-cadmium resistance protein TERM 800 910653 - 910668 + g 70 -4.7 -4.62069 | overlap 910645 GGCAATTTGATTTGA GCGAT CAAATC ATCGC TTTTTGAAATGCGCA Hac_1056 912588 - 911281 - | nickel cobalt outer membrane efflux protein TERM 801 911439 - 911424 - G 71 -4.6 -4.77986 | opp_overlap 911424 TCAAATATTCAAAAA GCCCTA TTTT TTGGGC TTCATAAGCAATGCG TERM 802 912180 - 912168 - G 72 -6.2 -4.51765 | CATAAGTCAAATAAA GGCG TTTAG CGCC AATAAAAGCGAGGTT TERM 803 912567 - 912548 - G 79 -4.3 -5.27938 | gap 1, opp_overlap 912548 ACTCTCAAACAAAAA CGCC-TCA TTGTT TGATGGCG TTTGAAAACCTTAAA glyS 914695 - 912578 - | glycyl-tRNA synthetase subunit beta TERM 804 913676 - 913660 - G 76 -3.6 -5.18371 | opp_overlap 913667 TTTCATAAAAGAAAA CCGCAT CGCTC AAGCGG GCTTTCAAAACCTTT Hac_1058 914810 - 915850 + | hypothetical protein TERM 805 917258 - 917244 - g 72 -5 -4.72029 | overlap 917234 GGGAATGGAATAAAA TCCATT AAA AACGGA GCCTTAAATAACATC pgm 915861 - 917339 + | phosphoglyceromutase gatC 917354 - 917632 + | aspartyl/glutamyl-tRNA amidotransferase subunit C TERM 806 917641 - 917657 + F 83 -8.1 -4.19472 | overlap 917656 TGAATAGGTTTAGTA TCAAGTT AAA AACTTGA TTTTAAAATCTATTG pfr 917994 - 918497 + | ferritin serB 918513 - 919136 + | hypothetical protein TERM 807 919238 - 919206 - f 76 -3.7 -5.40072 | opp_overlap 919224 919227 GGTTTCTTAAAAAAA TTTAAAATCAAAT AACCGCA ATTTGTTTTTAAA AATTAAAGATAAAGT TERM 808 920271 - 920305 + G 73 -7.4 -4.09685 | overlap 920272 TTTTTACCAAGATTT GAGTTTTAAAAAAATC TTA GATTTTTTTAAAACGA TTTTAGAAAATGACA TERM 809 920272 - 920304 + G 80 -10.9 -3.05597 | overlap 920271 TTTTACCAAGATTTG AGTTTTAAAAAAATC TTA GATTTTTTTAAAACG ATTTTAGAAAATGAC fuc 919306 - 920679 + | fucosyltransferase Hac_1064 921279 - 920689 - | hypothetical protein TERM 810 920769 - 920794 + g 91 -3.3 -5.93252 | GGTTTTTGAGCATGT CTTCTAAAGCA TAGG TGCTTAAAAAG TTTTTTGTTTTTAAA TERM 811 921291 - 921272 - G 70 -7.8 -3.63744 | overlap 921270 GTTTCGCCTAAAAGA CGCTCCAT ATAA AGGGAGCG TAAAACTTGAAGGCG aspA 922730 - 921324 - | aspartate ammonia-lyase mur 924053 - 922785 - | UDP-N-acetylglucosamine 1-carboxyvinyltransferase TERM 812 923532 - 923544 + g 70 -4.8 -4.56358 | opp_overlap 923541, overlap 923514 TTTAGCCAGACTTGC TGCC ATAAG GGCA TTTTCTGTGCCTGTA TERM 813 923789 - 923773 - G 71 -6.5 -4.06527 | AAAACCAAAATAGAA GCGCGCA TTT TACGCAC CAAATCATAAGTGGC Hac_1067 924463 - 924056 - | hypothetical protein galU 925295 - 924474 - | UTP-glucose-1-phosphate uridylyltransferase TERM 814 925110 - 925122 + g 70 -6.3 -4.29106 | GTCAAAATAATCTTC CAAAC TGC GTTTG TTTCTTCCTGTCACA slt 926971 - 925292 - | lytic murein transglycosylase TERM 815 926586 - 926610 + g 70 -2.9 -5.0925 | opp_overlap 926589, overlap 926590 926598 GGCTTAAGGGTTTGA ATAGGGATTTT ATC AAAATCCTTGA TTTTTGATTTTAAAG TERM 816 926590 - 926606 + g 77 -8.1 -3.91947 | opp_overlap 926589, overlap 926586 926598 TAAGGGTTTGAATAG GGATTTT ATC AAAATCC TTGATTTTTGATTTT Hac_1070 927273 - 926980 - | hypothetical protein gltX 928589 - 927270 - | glutamyl-tRNA synthetase TERM 817 927632 - 927653 + g 71 -4.5 -4.79223 | overlap 927615 AAAGATTCCTATCTT TTATTTGAG AAAG CTCTAATAA TTTTTCATCATCTAA TERM 818 928224 - 928253 + g 79 -5 -5.18355 | GTTTTTCTCTAAAGC CGCCCATTCA TCTAAATACC TGAAAGGGCG TTTTTCGTTTTTGGC omp15 928859 - 929962 + | outer membrane protein 15 rfaC 930001 - 930849 + | hypothetical protein typA 930895 - 932694 + | GTP-binding protein TYPA/BIPA-like protein MFOKI 932710 - 933639 + | site-specific type II DNA methyltransferase Hac_1076 934314 - 933622 - | hypothetical protein Hac_1077 934917 - 934315 - | hypothetical protein TERM 819 934581 - 934563 - G 84 -6 -5.32882 | CATGATTAGAAAAAA CGCTTTTT TGT AAAATGCG TGAAAGGTAGTATAA Hac_1078 935139 - 934921 - | hypothetical protein TERM 820 935424 - 935405 - g 74 -5 -4.87626 | overlap 935408 935421 TGTCAATAGCAAAAA GGACATTG AAAA CAATGTGC AGAGCATTATTAGAA TERM 821 935877 - 935859 - g 75 -8.2 -3.86822 | opp_overlap 935852 935858 GAAGCGGCTTACAAA GGATGTAA TGT CTACATCC GTATCTCAGGCTACA amiF 935316 - 936320 + | formamidase homA 937289 - 936825 - | hom family outer membrane protein Hac_1081 938000 - 937515 - | hypothetical protein Hac_1082 938860 - 938105 - | hypothetical protein Hac_1083 939463 - 938861 - | hypothetical protein TERM 822 939127 - 939109 - G 84 -6 -5.32882 | CATGATTAGAAAAAA CGCTTTTT TGT AAAATGCG TGAAAGGTAGTATAA Hac_1084 940126 - 939467 - | hypothetical protein TERM 823 939825 - 939815 - G 83 -8.2 -4.42653 | ATTGTATTGATAAAA CGGC ACA GCCG AGATATTACGAACAA surE 940926 - 940123 - | stationary phase survival protein SurE TERM 824 940319 - 940332 + g 71 -4.5 -4.72201 | TCATTTTTAGGGTCT GTGCG CCTA TGCAC TTCTTTTTTATACAC TERM 825 940359 - 940381 + g 71 -8.5 -3.4811 | overlap 940362 ACACTCTATAGCCTT TAGGGGTGA TGCAT TCACCCTTA TATTCTTGTAAGGAG TERM 826 940362 - 940378 + g 74 -8 -3.87364 | overlap 940359 CTCTATAGCCTTTAG GGGTGA TGCAT TCACCC TTATATTCTTGTAAG ispA 941834 - 940923 - | geranyltranstransferase TERM 827 941104 - 941116 + g 76 -5.5 -4.95618 | opp_overlap 941104 GCGCTATCTAAATGA GTGGT TTT ACCGC TTTCTTTTTCATCTT folE 942392 - 941850 - | GTP cyclohydrolase I htpX 943322 - 942393 - | heat shock protein HtpX truD 944457 - 943312 - | tRNA pseudouridine synthase D TERM 828 943727 - 943744 + g 90 -2.1 -5.95539 | AGGGCTTTTAGGGCG TTTGAAT GGAT ATTTAAA TTTTTTTGTTTAAAA recR 945035 - 944454 - | recombination protein RecR TERM 829 944929 - 944913 - G 72 -9.5 -2.88544 | TTTGAGCGCTAGATA TGGGTTT TCC AAACCCA AATGATACGCCATTT TERM 830 944960 - 944974 + g 79 -4.2 -5.24531 | overlap 944962 944970 TAAAGGCAGATTTTT TACCCA CAT TGGGGA TTTTTTCTAAACAAT Hac_1091 945245 - 945361 + | putative tautomerase TERM 831 945372 - 945358 - T 84 -3.6 -5.71712 | overlap 945359 945363 945365 TTTGAGACAAAAAAA CTAAAG AGT CTTTAA GGCTTAAAGGCTGCG omp16 946524 - 945421 - | outer membrane protein 16 gltX 946644 - 948035 + | glutamyl-tRNA synthetase TERM 832 948032 - 948020 - f 72 -4.9 -4.88288 | TAAAAGAATAGAAAA GTTTT TGA AAAAC TAAAAGGCTTAGCGA fragment 948061 - 948387 + | - hypothetical protein TERM 833 948752 - 948735 - g 76 -2.7 -5.37043 | ATCCTACACAAAAAA CCCTTAA CCAG TCAAGAG TCTTTATTAAAAAAA TERM 834 949225 - 949212 - g 70 -2.5 -5.02476 | opp_overlap 949205, overlap 949200 ATATTTTCTAAAAAA TTTAA CTTT TTAAA AAAACCGCCGATCTT fragment 948600 - 949283 + | COG0458EF hypothetical protein omp17 949276 - 949836 + | outer membrane protein 17 TERM 835 950102 - 950115 + F 77 -3.9 -5.46698 | TTAACGGCTAGATCT CAAAA ATAG TTTTG TTTTTTGATTTTAGC TERM 836 950320 - 950338 + G 74 -7.6 -3.88766 | TTTTAGCGGCTTTTT TTAAAATC AAT GATTTTAA TTTGCTGTCTGAAAT TERM 837 950506 - 950520 + G 75 -3.5 -5.23016 | TAGGGTATTTTGTTT TGGGT CTTTC GCCCA TTTTTTCCCTTGTTT TERM 838 950747 - 950731 - g 70 -5.1 -4.62069 | opp_overlap 950731 TCCTTATCTTAAAAA CCCTG ATTTCGG CAGGG ATTATTTTGATCATT kefB 950187 - 951437 + | glutathione-regulated potassium-efflux system protein TERM 839 951473 - 951451 - f 74 -6.3 -4.5265 | opp_overlap 951451 951452 951453, overlap 951438 951453 AATTACACTATAAAA CACAAGCTA TAAGC TTGCTTGTG TTGTCAGTGTTATGT TERM 840 951467 - 951453 - f 79 -8.6 -3.8637 | opp_overlap 951453 951452 951451, overlap 951451 951438 TTACACTATAAAACA CAAGCT ATA AGCTTG CTTGTGTTGTCAGTG TERM 841 951453 - 951467 + F 71 -8.6 -2.85459 | opp_overlap 951451 951438 951453, overlap 951452 951451 TTACACTATAAAACA CAAGCT ATA AGCTTG CTTGTGTTGTCAGTG TERM 842 952501 - 952487 - g 84 -8.6 -4.42788 | CTGAATTTCATAAAA TCGCTT CTA AAGCGA TTAAAGAGGGTTGGG pepF 951538 - 953274 + | hypothetical protein Hac_1099 953259 - 953747 + | hypothetical protein TERM 843 954653 - 954668 + G 70 -4.7 -4.61482 | opp_overlap 954641 954653, overlap 954647 954650 CTAGCTCTAGCCAAA GCGAA TGGCGT TTCGC TTATTTTTTGCGAAG Hac_1100 953759 - 955246 + | hypothetical protein TERM 844 955517 - 955506 - g 80 -5.8 -5.17576 | TATCAAGCCAAAAAA GAGC GAGA GCTC AAGCAAAAACAAGAC Hac_1101 955248 - 955562 + | hypothetical protein TERM 845 955752 - 955767 + G 73 -6.8 -4.31329 | opp_overlap 955739 AAGCAAACCCAAGTT GGCGCA TATA TGCGTC TTTTAAAGTTTTTAG Hac_1102 955572 - 956342 + | hypothetical protein TERM 846 956845 - 956827 - g 71 -3.2 -5.07107 | GAAACTTTTAAAAAA CTTTATAA AGA CCATAAAG AGCTAAAATGCAGTT Hac_1103 956644 - 956961 + | hypothetical protein TERM 847 958127 - 958096 - g 77 -5.8 -4.83615 | overlap 958081 958110 958112 GAGGTTTTAGAAAAA GCCCCCCTAAAAGA CACC CCTTTAATAGGGGC TAACATGCTCAATCC Hac_1106 957067 - 958962 + | hypothetical protein hsdR 959011 - 959349 + | - - type I restriction enzyme R protein fragment 1 hsdR 959374 - 959688 + | - - type I restriction enzyme R protein fragment 2 TERM 848 960179 - 960152 - g 80 -2.6 -5.54079 | CCAAAAATTAAAAAA CCCTAGCGTG TTTGATGG CACTCAAGGG AATGATGAAATCGTC hsdR 959859 - 961229 + | - COG0610V type I restriction enzyme R protein fragment 3 TERM 849 961430 - 961415 - g 73 -2.6 -5.2189 | overlap 961417 CTAACGATGAAAAAA TCCTTT CCTT AAAAGA AAAAATGGATATTGA TERM 850 961916 - 961952 + G 74 -8.8 -3.52906 | gap 1, opp_overlap 961937 961938, overlap 961914 CAATGGGAATTTTCA CGCTT-TTAAGCGCGCT AAAA AGCGCTCTTGATGAGCG TATTTCTAAGCGTCA hsdR 961213 - 962142 + | - COG2235E type I restriction enzyme R protein fragment 4 TERM 851 962398 - 962360 - g 75 -3.2 -5.30348 | overlap 962354 962363 962366 ACCGAAGAAGAAAAA GAAGATTTTTTTCTCACC TTA AGCGATAAAAAACTCCCC AAACTCTCTTATGAT TERM 852 963494 - 963479 - g 74 -5.4 -4.70159 | AAAAACAAAAAAACA CGCTTA AGAA CAAGCG ATATGGATTTGATTT TERM 853 963551 - 963531 - g 81 -5.5 -5.26119 | opp_overlap 963530, overlap 963526 963533 CTTTTAAAAATAAAA CCCAAAAAT CGG ATTTTTGCG CTGTGGTTTCTTTTG hsdM 962132 - 963763 + | type I restriction enzyme M protein Hac_1112 963768 - 964025 + | hypothetical protein hsdS 964109 - 964882 + | type I restriction-modification enzyme, S subunit TERM 854 965310 - 965297 - g 70 -8.1 -3.28864 | opp_overlap 965297, overlap 965296 TTATGAGCATAAAAT CGCCT CTAA AGGCG TTGATGGTGCAAGCC ppk 965112 - 967136 + | polyphosphate kinase TERM 855 967406 - 967388 - g 74 -5.3 -4.82901 | gap 1, opp_overlap 967403 CGGCTTTGATAAAAA CGCCTCTA TGAT TAG-GGCG TTAACCGCCTTTGGT TERM 856 967403 - 967415 + G 70 -6.2 -4.22524 | opp_overlap 967388 CGCCTCTATGATTAG GGCG TTAAC CGCC TTTGGTTTTGGCTAT TERM 857 967468 - 967456 - g 70 -9.1 -3.16492 | overlap 967454 GCACATTGACCAATA CCGCT CAA AGCGG GAATGAAAAACCCAG pyrD 967173 - 968228 + | dihydroorotate dehydrogenase 2 pqqE 968225 - 969559 + | putative zinc protease dapA 969577 - 970479 + | dihydrodipicolinate synthase TERM 858 970620 - 970604 - g 73 -3 -5.20333 | CACTTATAATAAAAA TGTTGA AGAAG CCAACA AAATTATAGAAGATG TERM 859 971170 - 971185 + G 76 -4 -5.26316 | gap 1, overlap 971172 GTAATCCTAACGATC TA-GCCG GAG CGGCTTA TTTTTTATGCGATGA TERM 860 971172 - 971182 + G 87 -8.2 -4.72201 | overlap 971170 AATCCTAACGATCTA GCCG GAG CGGC TTATTTTTTATGCGA hdhA 970476 - 971264 + | 7-alpha-hydroxysteroid dehydrogenase TERM 861 971545 - 971563 + G 71 -3.2 -5.03715 | overlap 971539 971546 GCCATTTGAGTTTTT TTGAAAAC TTC GTTTTTAG TTTTTTAGCGGTGAT TERM 862 971824 - 971846 + G 71 -4 -4.92239 | overlap 971816 TCTTAATGTGCGTAG CGCTTGGCTT TTT AGGGCATGCG TTTTTGAATTTTTCA Hac_1119 971274 - 971882 + | hypothetical protein pgsA 971879 - 972418 + | hypothetical protein TERM 863 972468 - 972486 + F 71 -7.6 -3.55946 | overlap 972466 TTTTGAAACTCTGTT TTTATCAA ATA TTGATAAA TATTATTTAACCTGA TERM 864 973338 - 973357 + G 71 -3.6 -5.00138 | gap 1, overlap 973338 973342 GAGTGTAGCGGTTTT TAGC-GCGA TGC TCGCTGTTA TTTTTGCTTTCACTG rocE 972694 - 974136 + | amino acid permease htrA 974183 - 975613 + | serine protease TERM 865 975724 - 975714 - g 88 -3.2 -5.72207 | overlap 975723 TTGAAACTAAAAAAA CGCT AGA AACG CTTATCAAACAAACG ispDF 975632 - 976852 + | bifunctional 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase/2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase protein Hac_1125 976874 - 977770 + | two component response regulator TERM 866 978215 - 978199 - g 73 -7.3 -4.05067 | overlap 978197 CATTGTAGAAAAATA CCCCTTT AAA AAAGGAG CTAAAATCCAAGGCG polA 977903 - 978727 + | putative DNA polymerase I Hac_1127 980240 - 978990 - | hypothetical protein TERM 867 979377 - 979364 - G 73 -3.9 -5.0925 | opp_overlap 979352 979364 TTCCAAAATTAAAAA TTTTG TATT CAAAA GTTTGATCGATCAAA cbpA 980408 - 981271 + | co-chaperone-curved DNA binding protein A hspR 981281 - 981652 + | heat shock transcriptional regulator TERM 868 982777 - 982792 + G 75 -7.6 -4.14739 | opp_overlap 982775 TCTTCTCAAGGCATA GGGTTT GAAA AAACCC TTTTAGAATGGCTCC Hac_1130 981649 - 982830 + | recombination factor protein RarA fur 982985 - 983437 + | ferric uptake regulation protein Hac_1132 983953 - 983447 - | hypothetical protein TERM 869 983598 - 983609 + g 70 -5.8 -4.22346 | opp_overlap 983592 983598, overlap 983591 GGGGTAAATTCTAAA TCCC CATT GGGA TTTTGAGTGACTTTC Hac_1133 984486 - 983950 - | hypothetical protein TERM 870 984246 - 984261 + g 74 -7.6 -3.96932 | CCACATACTGCCGGT GGCTTT CAAA AAAGCC TTTCTCGCTCTCTCT TERM 871 984416 - 984437 + g 78 -3.1 -5.40474 | gap 1 TCGTGTAAATACGCA CGCAA-AATT TCT GATTCTTGCG TTTTTTTAAACGAAT fliY 985367 - 984516 - | flagellar motor switch protein FliY fliM 986435 - 985371 - | flagellar motor switch protein FliM fliA 987204 - 986428 - | flagellar biosynthesis sigma factor Hac_1137 987496 - 987182 - | hypothetical protein Hac_1138 988385 - 987501 - | ATP-binding protein flhF 989755 - 988382 - | flagellar biosynthesis regulator FlhF folK 990243 - 989752 - | 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokin ase Hac_1141 991313 - 990240 - | putative proline peptidase TERM 872 990324 - 990303 - G 75 -4.3 -5.0538 | overlap 990304 GCGCACCCCAAAAAA TCCAGGGAT ATAA ATCCCAGGC TCCACAGAAAACACC TERM 873 990323 - 990304 - G 70 -7.8 -3.62746 | overlap 990303 CGCACCCCAAAAAAT CCAGGGAT ATAA ATCCCAGG CTCCACAGAAAACAC aroQ 991838 - 991332 - | 3-dehydroquinate dehydratase Hac_1143 993250 - 991955 - | hypothetical protein TERM 874 992673 - 992689 + g 89 -3.7 -5.79595 | opp_overlap 992673, overlap 992675 ACAAAAACAGAAAGG GTGAAAA AAA TTTTCTC TTTTTTATTTTGCGA TERM 875 992675 - 992687 + g 70 -4.9 -4.53077 | opp_overlap 992673, overlap 992673 AAAAACAGAAAGGGT GAAAA AAA TTTTC TCTTTTTTATTTTGC TERM 876 993222 - 993204 - G 76 -7.4 -4.32649 | overlap 993211 AGGGCAAAAATCAAA GTGAAGAC AGA GTCTGCAC TGAAAAAGGCTTTCA rpsO 993578 - 993306 - | 30S ribosomal protein S15 TERM 877 994367 - 994379 + G 72 -7.7 -3.77808 | CTAAATTTGTCAAGG GCGAT GCG ATCGC TTCTATTATCATCAC TERM 878 995849 - 995824 - g 79 -6.8 -4.72029 | CCTAATTTAAGAAAA GCCCTCTCCA ATCAAA TGGAGCAGGC CCGAATTGATGTTAT flhA 993736 - 995937 + | flagellar biosynthesis protein FlhA TERM 879 996010 - 996021 + G 76 -3 -5.42862 | TTATGCATGCCAGCT TGTT TCAA AACA TTTTTTTAAGAATAT TERM 880 996627 - 996612 - g 81 -4.6 -5.47399 | opp_overlap 996612 TGAAGCTTAAAAAAA TCGCTC TAGG GGGCGA TCCTATTGCAGAAAC Hac_1146 995957 - 997000 + | hypothetical protein TERM 881 997487 - 997502 + T 85 -9 -4.06582 | GCTTAAGAAACTACC GCTTGC TCAC GCAAGC TCTTTTATTATTGGA TERM 882 997539 - 997528 - T 73 -4.4 -5.0538 | opp_overlap 997528 TTGGATGGTAAAAAA TGCT AAAA AGCA TTCAATTAAATGGTT TERM 883 997693 - 997659 - T 70 -7.2 -3.7282 | opp_overlap 997662, overlap 997662 CCACTTTATTAACAA CAAGCCCTTAAGAGTT CTC ATCTCTTAGGGACTTA ACTATCGCTATAGTC TERM 884 997690 - 997662 - T 71 -6.7 -3.99374 | opp_overlap 997662, overlap 997659 CTTTATTAACAACAA GCCCTTAAGAGTT CTC ATCTCTTAGGGAC TTAACTATCGCTATA TERM 885 997803 - 997778 - T 90 -8.3 -4.91046 | overlap 997779 997781 TAGAAAAGAAAGAAA CTAGCAGAGAG AAAA CCCTCTGCCAA AAGAAGAAAAAGGAT TERM 886 997802 - 997779 - T 80 -9.6 -3.52187 | overlap 997778 997781 AGAAAAGAAAGAAAC TAGCAGAGAG AAAA CCCTCTGCCA AAAGAAGAAAAAGGA TERM 887 997800 - 997781 - T 82 -10 -3.29545 | overlap 997779 997778 AAAAGAAAGAAACTA GCAGAGAG AAAA CCCTCTGC CAAAAGAAGAAAAAG omp18 998093 - 997818 - | - - outer membrane protein 18 fragment 4 omp18 998343 - 998137 - | - - outer membrane protein 18 fragment 3 omp18 998769 - 998401 - | - - outer membrane protein 18 fragment 2 omp18 999014 - 998820 - | - - outer membrane protein 18 fragment 1 TERM 888 998890 - 998906 + gH 75 -5.1 -4.96501 | overlap 998884 TTTGGTTTTCCGCTG TCAGCTG TTT CACCTGA TTTGTTTTTGTCACC Hac_1152 999013 - 999204 + | hypothetical protein Hac_1154 1000260 - 999589 - | two-component system regulatory protein Hac_1155 1001732 - 1000620 - | integral membrane protein TERM 889 1001918 - 1001902 - H 82 -5.1 -5.35721 | overlap 1001904 ATACAATAATAAAAA GATCCAT TCA ATGGAGC CCATAAATAAGGAGA TERM 890 1001916 - 1001904 - H 70 -6.3 -4.28653 | overlap 1001902 ACAATAATAAAAAGA TCCAT TCA ATGGA GCCCATAAATAAGGA TERM 891 1002426 - 1002440 + G 71 -4.2 -4.78764 | GCACTAGGATTGGGG CGATTC ATA GCATCG TTTTTGCTGGGTTTA acoE 1001939 - 1003927 + | acetyl-CoA synthetase Hac_1157 1004420 - 1003980 - | hypothetical protein rbfA 1004748 - 1004413 - | ribosome-binding factor A infB 1007573 - 1004748 - | translation initiation factor IF-2 TERM 892 1006863 - 1006877 + g 90 -4.2 -5.80951 | opp_overlap 1006859, overlap 1006862 1006865 TTCAAAAATAGCCAC CGCACT TTG AGTGGG TTTTTTGTTTTCGGT Hac_1160 1007797 - 1007570 - | nucleic acid binding transriptional terminator thrB 1008692 - 1007811 - | homoserine kinase Hac_1162 1009226 - 1008747 - | hypothetical protein TERM 893 1009244 - 1009231 - R 70 -3.9 -5.09426 | TCCAATTCCAAAAAA TAAAC CCTA GTTTA AAATTAAGCGAAAGC lpxC 1010135 - 1009248 - | UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase minC 1010719 - 1010132 - | septum formation inhibitor TERM 894 1010216 - 1010229 + g 70 -2.5 -5.07652 | AAGCCGTTCAATCTC TTTTA AAGA TAAAA TTTTATTTTGAAAAA Hac_1165 1012050 - 1010722 - | metalloendopeptidase related membrane protein TERM 895 1011853 - 1011864 + g 70 -7.2 -3.74992 | CGCGTATCGTTTGAT GCCC TTTG GGGC TGTTATTTTAATCTT Hac_1166 1013004 - 1012060 - | hypothetical protein TERM 896 1012888 - 1012898 + g 73 -2.6 -5.2422 | TGTGAGCTGTTGCTT TAAA TTT TTTA TTTTTTCATCTAATT Hac_1167 1013846 - 1013013 - | hypothetical protein Hac_1168 1014558 - 1013836 - | hypothetical protein TERM 897 1014655 - 1014636 - H 70 -4.4 -4.86621 | gap 1, overlap 1014638 1014640 ATCCCCAATTAAAAA TGGAGTAAA ATT TTTAC-CCA CCCTTAAAGTCATGC panB 1014706 - 1015518 + | 3-methyl-2-oxobutanoate hydroxymethyltransferase ruvB 1015518 - 1016528 + | Holliday junction DNA helicase B tatB 1016596 - 1017063 + | sec-independent translocase TERM 898 1017612 - 1017596 - g 78 -9.5 -3.57462 | opp_overlap 1017596 1017594 1017610 GATGCGAGCTTGAAA GCGTATT TTA AATACGC TATTGTAGTGATTTT TERM 899 1017596 - 1017612 + G 75 -9.5 -3.32405 | opp_overlap 1017596, overlap 1017594 1017610 GATGCGAGCTTGAAA GCGTATT TTA AATACGC TATTGTAGTGATTTT tatC 1017056 - 1017796 + | putative sec-independant protein translocase TERM 900 1017972 - 1017960 - g 70 -4.8 -4.56597 | opp_overlap 1017960 CTTTTTCCCTAAAAA CACC CTTGT GGTG TTGAATGACACTAAA queA 1017793 - 1018830 + | S-adenosylmethionine:tRNA ribosyltransferase-isomerase gidB 1018827 - 1019363 + | glucose-inhibited division protein B Hac_1175 1019357 - 1019587 + | hypothetical protein TERM 901 1019724 - 1019709 - g 71 -3.3 -5.09225 | opp_overlap 1019709 AGCGCACCCAAAAAA TTTGG AATTAG CCAAA TATTGCTTTGAAAAT Hac_1176 1019590 - 1019997 + | hypothetical protein TERM 902 1020047 - 1020030 - T 79 -9.9 -2.89212 | overlap 1020029 ACTAGTTATAATAAG CCCCTTT AAAA AAAGGGG AGATGTCCGAGTGGT omp19 1020783 - 1020133 - | outer membrane protein 19 TERM 903 1020985 - 1020997 + H 73 -7.7 -3.76373 | opp_overlap 1020984 1020985 ATTTATCATTATAAG GCGTT AAG AACGC TTTGGCTATTGAAAA cheY 1021049 - 1021423 + | CheY response regulator TERM 904 1021478 - 1021488 + G 73 -4 -5.07652 | overlap 1021473 CCTAAGGAGCGAGAG CTTT TTG AAAG TTTTCTTTTAGACGC prmA 1021424 - 1022413 + | ribosomal protein L11 methyltransferase TERM 905 1023072 - 1023082 + G 71 -6.8 -4.07568 | opp_overlap 1023071 1023080 AGGCCCTCCAGGAAC GGGT AAA ACCC TTTTAGCAAAAGCGG TERM 906 1023414 - 1023426 + G 74 -9.1 -3.53343 | overlap 1023403 AGACCCAGCCTTAAT GCGTC CAG GACGC TTTGACAGGCAGGTT ftsH 1022422 - 1024329 + | membrane bound zinc metallopeptidase TERM 907 1024452 - 1024470 + F 100 -7.4 -5.35222 | opp_overlap 1024443, overlap 1024446 1024453 TACAAACAGCGTTGC AGAGCGTT TCT AACGCTCA TTTTTTATGCATTTT TERM 908 1024453 - 1024469 + F 90 -10.9 -3.78693 | overlap 1024446 1024452 ACAAACAGCGTTGCA GAGCGTT TCT AACGCTC ATTTTTTATGCATTT TERM 909 1025280 - 1025262 - g 74 -6.2 -4.66833 | TTTTAATGGTAAAAA TTATTTTT AAT AAAAATAA GAGTGCATGAAAGCG pssA 1024577 - 1025290 + | hypothetical protein TERM 910 1026988 - 1026976 - g 70 -7.7 -3.62491 | AAAAAAGGCGTGAAA GAGCA TAT TGCTC AAATCAAAAATTTAG copA 1025287 - 1027512 + | copper-transporting ATPase copP 1027513 - 1027713 + | copper iron binding protein TERM 911 1027838 - 1027807 - f 90 -6 -5.58074 | overlap 1027798 1027796 GAACTAGTAAAAAAA TAGGGTTATTTTTT GACA AAAACCTAACCCTA AAAATCATTGTAATT fragment 1027893 - 1028204 + | - hypothetical protein fragment 1028206 - 1028487 + | - hypothetical protein fragment 1028629 - 1028721 + | - hypothetical protein Hac_1188 1030019 - 1028745 - | hypothetical protein TERM 912 1028797 - 1028809 + g 85 -4.9 -5.57396 | opp_overlap 1028797 TTATTTTTATAAAAT TCTAT GCG ATAGA TTTTTTCTTGCTTGT TERM 913 1030121 - 1030110 - H 77 -4.4 -5.13473 | opp_overlap 1030101 1030110, overlap 1030101 ATTATACCTAAAAAA CCTT TTTT AAGG GTGTTTTTTAAGTTT TERM 914 1030374 - 1030361 - g 76 -5.3 -5.00884 | ATCGCTTGTAAAAAA CTCTT CAAT AAGAG CATGGGTTTAGAAGA Hac_1189 1030193 - 1030714 + | hypothetical protein Hac_1190 1031688 - 1030711 - | high-affinity nickel transport protein TERM 915 1030927 - 1030911 - G 76 -5.1 -5.13741 | TCAACCCAATAAAAA GAGCG ATAAACA CGCTC AAGGCGGTGATAGAG Hac_1192 1031891 - 1032121 + | hypothetical protein TERM 916 1032342 - 1032328 - g 70 -2.8 -5.03145 | GAAGCTGTTAAAAAA CAAAGA CTA TCCTCG CAAATTGCAACCAAG Hac_1193 1032172 - 1032369 + | hypothetical protein Hac_1195 1033082 - 1032834 - | RNA-binding protein TERM 917 1032945 - 1032959 + g 76 -2.8 -5.4387 | opp_overlap 1032946 1032947, overlap 1032946 TTGCATTTCCACAAA ACCAAA CCC TTTGGG TTTTTTCGTTTCTCT TERM 918 1032958 - 1032946 - G 72 -6.3 -4.38712 | opp_overlap 1032945 1032946, overlap 1032947 TGCATTTCCACAAAA CCAAA CCC TTTGG GTTTTTTCGTTTCTC atpB 1033905 - 1033225 - | F0F1 ATP synthase subunit A guaB 1035472 - 1034027 - | inositol-5-monophosphate dehydrogenase TERM 919 1034066 - 1034079 + g 75 -6.7 -4.41348 | TTTAGTAATATCTAC GCCAT GCAC ATGGC TTTCTTTCAACCCAG TERM 920 1035145 - 1035162 + g 72 -6.3 -4.38712 | AATTATCCGTTATAG CTTTAGC GTCC GCTAGAG TTTTGTGCGCGTGGA gatA 1036843 - 1035482 - | aspartyl/glutamyl-tRNA amidotransferase subunit A TERM 921 1036263 - 1036249 - G 74 -5 -4.87803 | opp_overlap 1036249 TAGCGTCAAATAAAA TAGAAG CGT CCTCTA CATTTTGTGTGATAG Hac_1199 1036910 - 1037086 + | hypothetical protein TERM 922 1037081 - 1037098 + T 76 -8.5 -3.56758 | overlap 1037093 TTTCAAGGGGTTATC GCTTGAT TAAA ATCAAGC TCTTTGATATTGGTT coaE 1037755 - 1037153 - | dephospho-CoA kinase TERM 923 1037242 - 1037254 + g 74 -4.8 -4.86133 | opp_overlap 1037236 1037242 TGTCTATAACATAAT CGCT CATCA AGCG TTTTTGCTCTATATC speE 1038545 - 1037757 - | spermidine synthase Hac_1203 1039497 - 1038622 - | hypothetical protein TERM 924 1039821 - 1039805 - g 70 -5.9 -4.27211 | TCTAAAGAAATCAAA GCCTTTA ATT TAAAAGC TGCTCAAATGAGCGA engA 1039574 - 1040962 + | GTP-binding protein EngA hupB 1041103 - 1041387 + | histon like DNA-binding protein HU Hac_1207 1041845 - 1042450 + | hypothetical protein TERM 925 1042763 - 1042777 + G 79 -8.6 -4.07885 | opp_overlap 1042762 CGATATTTATATGAC CAAACG GAG CGTTTG TTTTAGCCAAAAATG Hac_1208 1042470 - 1043087 + | hypothetical protein TERM 926 1043241 - 1043256 + G 77 -6.8 -4.56597 | ATGTCGCTGGGGCTA GAGGTG CTGA CGCCTC TTTTTACAACCCGGC ompP1 1043084 - 1044850 + | outer membrane transport protein P1 TERM 927 1045825 - 1045813 - g 72 -7.7 -3.82824 | overlap 1045803 CAGCAGCCATAATAA TAGCC AAT GGCTA GAGCCTGATGATTTA flaA1 1044854 - 1045855 + | flagellar glycosylation protein TERM 928 1047116 - 1047098 - g 71 -6.8 -4.1196 | AAGCGAGTTTTAAAA TCCTTGAT TTT ATCAAAGA CAATTCCCTTTAATG dfp 1045852 - 1047129 + | bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase TERM 929 1047560 - 1047573 + G 75 -6.7 -4.4595 | opp_overlap 1047548, overlap 1047553 CAACATGCTTTTAAG CTTGC AATC GCAAG TTTTAAGTTTTGTGA Hac_1212 1047129 - 1047866 + | hypothetical protein Hac_1213 1048004 - 1048987 + | site-specific DNA methyltransferase Hac_1214 1048984 - 1049937 + | type II restriction endonuclease TERM 930 1049983 - 1050007 + F 78 -5.9 -4.90266 | opp_overlap 1049982 1049983 TATTGATATTCAAAG CTTATTGTTAA TTT TTAAAAATAAG TTTTTGGTTACTCCA Hac_1215 1050101 - 1050793 + | hypothetical protein TERM 931 1050823 - 1050848 + T 72 -3.5 -5.14563 | opp_overlap 1050823 1050828 CCAAACACTGATAAC TAAAATTTTAA TTTT TTAAAATTCTA TTTTTTGATAAAACC TERM 932 1050952 - 1050969 + T 74 -8.5 -3.19874 | overlap 1050939 TTTTAAGAGACTATC GCTTGAT TATC ATCAAGC TCTTGGCTATTTGTT TERM 933 1050992 - 1051003 + T 81 -4.4 -5.38249 | opp_overlap 1050992 TATTTGTTGTAAAAA TGCT TTTT AGCA TTTTTTATAATTCAT Hac_1216 1051952 - 1051035 - | hypothetical protein TERM 934 1051131 - 1051152 + g 78 -3.2 -5.47218 | ATCCACAACGCTCTT TAAAAAAT CACGGA ATTTTTTA TTTTTTTCGCTAAGC yheS 1053555 - 1051954 - | ABC transporter ATP-binding protein TERM 935 1052486 - 1052469 - G 79 -9.1 -3.97406 | opp_overlap 1052468 CTAAAATTTTACAAA GCGTGGA TTTA CCCACGC CATTTGGCCCTATGA algI 1053704 - 1055203 + | alginate o-acetyltransferase Hac_1219 1055213 - 1056310 + | hypothetical protein gmhA 1056879 - 1056313 - | hypothetical protein waaE 1058275 - 1056884 - | ADP-heptose synthase TERM 936 1057129 - 1057144 + g 74 -7.5 -3.89614 | ACGCTCTGTCTTTTT CGCCC ACTATG GGGCG TTTATCCCCCTTAAG TERM 937 1057587 - 1057572 - G 76 -5.4 -5.00616 | gap 1, opp_overlap 1057554 TTTTTTTCTAAAAAA GCGATGC CTT GC-TCGC TCAAAGTAACTAAAG TERM 938 1057860 - 1057872 + g 75 -3.4 -5.24129 | GAAAGAATAATCCCA TCCA TTTCT TGGA TTTTTTCTGCGACAA waaD 1059264 - 1058272 - | ADP-L-glycero-D-mannoheptose-6-epimerase TERM 939 1059199 - 1059184 - G 75 -4.6 -5.08255 | ATCTTGAAAATAAAA GGCCAG ATTA CTGCCC ACAAAACCAGCCCCA Hac_1223 1059794 - 1059273 - | putative histinol phosphatase Hac_1224 1060530 - 1059784 - | hypothetical protein TERM 940 1059830 - 1059844 + g 79 -7.8 -4.3129 | overlap 1059831 GTGGTGTCGTTTTGG TGGTGC ATT GCACCG TTTTGATGATGCATC TERM 941 1059831 - 1059843 + g 70 -9.1 -3.18292 | overlap 1059830 TGGTGTCGTTTTGGT GGTGC ATT GCACC GTTTTGATGATGCAT TERM 942 1060021 - 1060006 - G 75 -6.8 -4.47707 | overlap 1060007 CCCCATTAAAAACAA CGGCAC GCTA GTGCCA AGCCCAAAAGAAAGG TERM 943 1060020 - 1060007 - G 70 -8.1 -3.27901 | overlap 1060006 CCCATTAAAAACAAC GGCAC GCTA GTGCC AAGCCCAAAAGAAAG TERM 944 1060166 - 1060139 - G 70 -2.8 -5.15381 | opp_overlap 1060154, overlap 1060141 AACACACCTAAAAAA TACAACCCCAAA ACGC TTTGAAATTGCA AAGTTTTTTTCATCA TERM 945 1060154 - 1060169 + g 81 -3.3 -5.52384 | opp_overlap 1060141 1060139 TACAACCCCAAAACG CTTTG AAATTG CAAAG TTTTTTTCATCAAGA Hac_1225 1061192 - 1060527 - | pantothenate kinase Hac_1226 1062873 - 1061197 - | hypothetical protein TERM 946 1061642 - 1061658 + g 70 -3 -5.08824 | overlap 1061651 1061652 TCTTGCAAATAAATC GGAGAA TTTTC TTTTCC TTTTTTAGGTAAAGG TERM 947 1062891 - 1062901 + r 79 -2.6 -5.72207 | AATCAATGCATCCCT TAAA TCG TTTA TTTTTTTGGTTTGGA Hac_1227 1063525 - 1062899 - | hypothetical protein dut 1063959 - 1063522 - | deoxyuridine 5'-triphosphate nucleotidohydrolase TERM 948 1063890 - 1063904 + g 79 -8.6 -4.00532 | opp_overlap 1063889 CATGCAAATCAAAGC CTGAAG AAC CTTCAG TTTGGTATTTAGGGA greA 1064443 - 1063949 - | transcription elongation factor GreA TERM 949 1064269 - 1064281 + g 76 -4.1 -5.27335 | opp_overlap 1064257 1064254, overlap 1064265 1064257 CCACGATTCTTGCCT CAATG AAG CGTTG TTTTTCTTTAGCGGC lpxB 1065566 - 1064484 - | lipid-A-disaccharide synthase Hac_1231 1066024 - 1065566 - | hypothetical protein TERM 950 1065844 - 1065854 + g 71 -4 -4.9645 | CTATGTGGGGCAATT TTTG GTT CAAA TTTTCTTCTTCTAAT hypA 1066383 - 1066030 - | hydrogenase nickel incorporation protein flgE 1068600 - 1066444 - | flagellar hook protein FlgE cdh 1069560 - 1068820 - | CDP-diacylglycerol pyrophosphatase TERM 951 1069584 - 1069603 + H 75 -9.4 -2.91005 | opp_overlap 1069588, overlap 1069583 1069581 1069586 TCCTTGTTTTTTGAT GAGAGTTT TTGC AAACTCTC CTGTTATTTTTCTAC phnA 1069849 - 1070148 + | alkylphosphonate uptake protein TERM 952 1070176 - 1070159 - T 77 -4.2 -5.46698 | opp_overlap 1070159 CTTAAAAGCAAAAAA GCTTAA GAATTT TTAAGC TTTTGAAAGGTTATT Hac_1237 1070402 - 1070187 - | hypothetical protein Hac_1238 1071345 - 1070470 - | katA associated protein TERM 953 1071010 - 1070990 - G 78 -6.9 -4.38712 | opp_overlap 1070994, overlap 1070992 CCGATCGCTACAAAA TCGCTCGTT TCA AACAAACGA TCCTTTAATTGATAG TERM 954 1071403 - 1071429 + r 75 -9.4 -2.87344 | opp_overlap 1071394 1071404 GAAAAAGCAAGACAA ACCACCAAGCCT TTA AGGATTGGTGGC TATCTCAAAAACCTA TERM 955 1071428 - 1071404 - R 100 -12.9 -4.34766 | opp_overlap 1071403, overlap 1071394 AAAAAGCAAGACAAA CCACCAAGCCT TTA AGGATTGGTGG CTATCTCAAAAACCT TERM 956 1071505 - 1071488 - R 70 -7.1 -3.6292 | opp_overlap 1071488 ATAAAGACGCCTAAA GAAAAAG CTTA CTTTTTC TTTTTTGTGTGAGAC TERM 957 1071488 - 1071505 + r 100 -7.1 -5.36441 | opp_overlap 1071488 ATAAAGACGCCTAAA GAAAAAG CTTA CTTTTTC TTTTTTGTGTGAGAC katA 1073013 - 1071496 - | hypothetical protein TERM 958 1074644 - 1074634 - g 72 -5.4 -4.67904 | GATGAAGGGCAAAAA CAAG TCG CTTG CAGTCTTGTGGATAA frpB 1073314 - 1075683 + | iron-regulated outer membrane protein TERM 959 1075730 - 1075741 + T 73 -4.4 -5.03314 | opp_overlap 1075730 1075740 ATGTTGGCAATAAAA TGCT GAAA AGCA TTTTTTAAAAATAAA ruvC 1076430 - 1075957 - | Holliday junction resolvase TERM 960 1076084 - 1076106 + g 70 -2.7 -5.15969 | gap 1 ACTTGCTCTTTAGCG GCT-TTGCCG TTAC CGGTGAGAGC TTTTTTAACTTGCAA Hac_1243 1076563 - 1077294 + | hypothetical protein TERM 961 1077372 - 1077382 + F 70 -4 -5.00616 | GCCTTTGAGCGTTTT TATG GTC CATA TTTTTTCAAAACAAA homB 1077511 - 1077927 + | - - hypothetical protein homB 1077959 - 1078885 + | - - hypothetical protein homB 1078986 - 1079120 + | - - hypothetical protein homB 1079186 - 1079506 + | - - hypothetical protein ruvA 1080135 - 1079584 - | Holliday junction DNA helicase motor protein TERM 962 1079916 - 1079930 + g 70 -2.8 -5.15381 | opp_overlap 1079916 1079917, overlap 1079917 CATTGATTTTTAAAA GCCTTT CAA AAAGGA TTTTTTCGCTCTCTT Hac_1249 1082001 - 1080166 - | hypothetical protein TERM 963 1083034 - 1083054 + G 91 -3.2 -5.86061 | opp_overlap 1083029, overlap 1083037 CAGGATTTAATCTTA CAACGCTT GCAAA AGGCGTGG TTTTTTTTGGTAGGG mviN 1082095 - 1083555 + | virulence factor MviN TERM 964 1083620 - 1083589 - g 79 -2.2 -5.56372 | overlap 1083583 1083591 AAATTAAAACAAAAA GTCCCTTTTGAGCC TTTA GCCCCAAAAAAGGC GAATATTTATGTGTG TERM 965 1084381 - 1084364 - g 76 -2.7 -5.37865 | TCAATAATGAAAAAA TGTCTAA AAGT TTAGGCA ATAGCTTTTTTGTTA cysS 1083556 - 1084953 + | cysteinyl-tRNA synthetase vacA 1085315 - 1085509 + | - - vacuolating cytotoxin vacA fragment 1 vacA 1085576 - 1085866 + | - - vacuolating cytotoxin vacA fragment 2 vacA 1085841 - 1086053 + | - - vacuolating cytotoxin vacA fragment 3 vacA 1086075 - 1086191 + | - - vacuolating cytotoxin vacA fragment 4 vacA 1086204 - 1086419 + | - - vacuolating cytotoxin vacA fragment 5 TERM 966 1086597 - 1086571 - g 70 -8.8 -3.0644 | ATCTAACCGGGAATA CCACCGTTAATG GGG CATTAAGGGTGA ATAAAGAAGTGGGTG vacA 1086489 - 1086767 + | - - vacuolating cytotoxin vacA fragment 6 vacA 1086971 - 1087501 + | - - vacuolating cytotoxin vacA fragment 7 vacA 1087518 - 1087838 + | - - vacuolating cytotoxin VacA fragment 8 TERM 967 1087889 - 1087856 - f 77 -8.9 -3.25162 | opp_overlap 1087856 1087859, overlap 1087854 1087852 CACAAACAACAGACA GGCGCGTTTCCTACG CTCT CATAAAAAACGCTCC TTTGGTCAAACGCAA vacA 1087984 - 1088106 + | - - vacuolating cytotoxin vacA fragment 9 vacA 1088177 - 1088449 + | - - vacuolating cytotoxin VacA fragment 10 vacA 1088465 - 1088665 + | - - vacuolating cytotoxin vacA fragment 11 vacA 1088690 - 1088824 + | - - vacuolating cytotoxin VacA fragment 12 vacA 1088911 - 1089129 + | - - vacuolating cytotoxin VacA fragment13 TERM 968 1089163 - 1089179 + T 100 -12.3 -3.87641 | TGATCGCTTCTCTAA CCCATGC TTG GCATGGG TTTATGGGGGATATT TERM 969 1089594 - 1089608 + T 72 -8.6 -2.99562 | overlap 1089593 AACAAAGCTTTTTCA GCGTTT CAA AAACGC CTTTATGATGGATTT cst 1090778 - 1089591 - | putative bifunctional alpha-2,3/-2,8-sialyltransferase cst 1092043 - 1090775 - | bifunctional alpha-2,3/-2,8-sialyltransferase neuA 1092689 - 1092030 - | N-acylneuraminate cytidylyltransferase TERM 970 1092194 - 1092182 - G 79 -4.8 -5.26316 | TGACTTGATAAAAAA CAGG CATGT CCTG GCGCCTGATAGTGCT neuC 1093927 - 1092686 - | hypothetical protein neuB 1094974 - 1093937 - | N-acetylneuraminic acid synthetase TERM 971 1094070 - 1094082 + g 70 -2.7 -5.16472 | CGTTTCACCCATGCA TTACT CTC AGTGA TTTTTTCGCCTTTTT TERM 972 1094717 - 1094731 + g 73 -2.8 -5.20216 | overlap 1094719 CTCCCTTTCATCGTT TTTGCT CAA AGCACA TTTTTTCATGATCTC fecE 1095875 - 1095108 - | iron(III) dicitrate transporter, ATP-binding protein fecD 1096855 - 1095875 - | iron(III) ABC transporter, permease protein vdlC 1097691 - 1096855 - | short chain dehydrogenase/reductase family oxidoreductase TERM 973 1097267 - 1097256 - G 90 -2.2 -5.85178 | AATAGCCAAAAAAAA GCAC GCTC ATGC ACCCTGCGATGGAAG Hac_1275 1097831 - 1098352 + | putative Acyl-CoA hydrolase Hac_1276 1099039 - 1098674 - | hypothetical protein TERM 974 1099531 - 1099521 - R 83 -6.8 -4.84359 | CGAGTTGGATAAAAA CGGA AAA TCCG CCGCATCCACTTGGC omp20 1099839 - 1099609 - | - - outer membrane protein 20 fragment 2 omp20 1100892 - 1100455 - | - - outer membrane protein 20 fragment 1 Hac_1285 1101636 - 1102157 + | hypothetical protein hypD 1103220 - 1102108 - | hydrogenase expression/formation protein hypC 1103462 - 1103226 - | hydrogenase expression/formation protein TERM 975 1103473 - 1103495 + r 75 -2.7 -5.60993 | CACATTAAAACGAAT GCGTGGA TTGGTAATT TTCACGC TTTTTTTCTAAAAGA hypB 1104190 - 1103462 - | hydrogenase expression/formation protein TERM 976 1103499 - 1103513 + g 74 -5.8 -4.66953 | opp_overlap 1103509 TAATTTTCACGCTTT TTTTCT AAA AGAAAA TTTTTAAAATCTTCC TERM 977 1103880 - 1103892 + g 70 -7.7 -3.60627 | TCCAAATGGCACGCT TCACC GGT GGTGA TTTGGCGTGCACTCA TERM 978 1103896 - 1103911 + g 93 -10.4 -5.02476 | CACCGGTGGTGATTT GGCGTG CACT CACGCC TTTTTTACGCAATCT TERM 979 1104336 - 1104321 - R 78 -9 -3.56758 | opp_overlap 1104320 AATCAATACTAAAGA GCTTGC GTGA GCAAGC GATATTTTCTTAAGC TERM 980 1104469 - 1104485 + r 72 -3.7 -5.27335 | opp_overlap 1104469, overlap 1104471 1104478 AAGCTTTAACAATTA GTGTTTT TCC AAAACCC TTTTTGTTTGCAAAG ackA 1105668 - 1104466 - | acetate kinase pta 1107201 - 1105678 - | phosphate acetyltransferase TERM 981 1107278 - 1107288 + H 76 -5.4 -5.00884 | opp_overlap 1107264 1107278 ATGATTTATAAAAAA TGCT TTT AGCA TTTTTTAAAACAAAT TERM 982 1107288 - 1107278 - H 80 -5.4 -5.28778 | opp_overlap 1107278, overlap 1107264 ATGATTTATAAAAAA TGCT TTT AGCA TTTTTTAAAACAAAT TERM 983 1107385 - 1107413 + H 74 -8.9 -3.17194 | TTTTTAAGGGGGTTG TAGGGGGAATTAT TTC AAAATACCCCCTA TTCCCTTAAGAGAAT TERM 984 1108017 - 1108006 - g 84 -2.2 -5.71638 | CAAGAATGAAAAAAA GCCT AACG AAGC CCTTTCTAACGCCCA TERM 985 1108313 - 1108297 - g 70 -2.9 -5.06451 | overlap 1108312 CACGACTGCAAAAAA CGACGCT AAA AACACCG CCAACCTTTCTAGCG TERM 986 1108421 - 1108401 - g 100 -3.9 -6.25242 | overlap 1108402 ATAACGAAAAAAAAA CGCCCCCTT TAA AAGAGAGCT TGCAAATGAACGCCA TERM 987 1108420 - 1108402 - g 76 -7.4 -4.31485 | overlap 1108401 TAACGAAAAAAAAAC GCCCCCTT TAA AAGAGAGC TTGCAAATGAACGCC Hac_1293 1107578 - 1109137 + | hypothetical protein flgD 1109188 - 1110066 + | flagellar basal body rod modification protein TERM 988 1110577 - 1110567 - g 74 -5.4 -4.74453 | GAAGATATTCAAAAA TTGC ATG GCAA CACCCTTTCGCCCTT flgE 1110063 - 1111880 + | flagellar hook protein FlgE Hac_1296 1111937 - 1112560 + | putative restriction endonuclease TERM 989 1113309 - 1113298 - g 80 -3 -5.58074 | CAATCACGAAAAAAA CTAA CGCT TTAG AAAAAATGGTTTTTG TERM 990 1113472 - 1113447 - g 85 -6.9 -5.02476 | ATATCCCCTAAAAAA CGCATTTATGT CAAT ACAAAAACGCG CCAAAAAAACCCTTT TERM 991 1113659 - 1113673 + G 70 -2.9 -5.15969 | CTCTTTAGAAAACGC TCTTT TGCCT AAAGA TTTTTTAAATTAGGA HINDIIM 1112553 - 1113686 + | site specific DNA-methyltransferase TERM 992 1114067 - 1114054 - g 71 -4.5 -4.8048 | TGTGGATACTAAAAA CGCCA TAGA TGACG ATAAAAAGCCCTACA TERM 993 1115323 - 1115312 - g 72 -2.2 -5.1848 | AACGAATTTAAAAAA CTGC AAGT GCAA AAACGCTTCAATGAA rep 1113695 - 1115713 + | ATP-dependent DNA helicase TERM 994 1115772 - 1115806 + F 70 -7.2 -3.7282 | opp_overlap 1115775, overlap 1115775 GACTATAGCGATAGT TAAGTCCCTAAGAGAT GAG AACTCTTAAGGGCTTG TTGTTAATAAAGTGG TERM 995 1115775 - 1115803 + F 71 -6.7 -3.99374 | opp_overlap 1115775, overlap 1115772 TATAGCGATAGTTAA GTCCCTAAGAGAT GAG AACTCTTAAGGGC TTGTTGTTAATAAAG TERM 996 1115926 - 1115937 + F 73 -4.4 -5.0538 | opp_overlap 1115926 AACCATTTAATTGAA TGCT TTTT AGCA TTTTTTACCATCCAA TERM 997 1115978 - 1115963 - f 85 -9 -4.06582 | TCCAATAATAAAAGA GCTTGC GTGA GCAAGC GGTAGTTTCTTAAGC omp21 1116704 - 1118254 + | outer membrane protein 21 TERM 998 1119641 - 1119629 - g 73 -4.1 -5.03314 | GGTATTTTGAAAAAA GACTT GAA AAGCC ACAACCAACACTCTA omp22 1118276 - 1119772 + | outer membrane protein 22 TERM 999 1119793 - 1119813 + T 90 -8.3 -4.77757 | opp_overlap 1119792 1119793, overlap 1119786 1119784 CCTATGGCCTATAAG CTCAAAGCT TTT GGCTTTGGG TTTTACTTTTTACCC fecA 1122528 - 1120003 - | iron(III) dicitrate transport protein TERM 1000 1121563 - 1121551 - G 70 -7.7 -3.60502 | ATACACAGCCCCAAA GCGTT GTG AACGC CCGCCTTTTTGGTTG omp23 1122691 - 1122930 + | outer membrane protein 23 yckJ 1123716 - 1123021 - | ABC-type amino-acid transport, permease component TERM 1001 1123643 - 1123623 - G 79 -6.9 -4.53439 | opp_overlap 1123633, overlap 1123633 CCAAAGGCAAAGAAA TGCAAAAAG CGG CTTTTAGCA TGGGGTAGAAAGCCT yckK 1124491 - 1123718 - | ABC-type polar amino acid transport,periplasmic component. TERM 1002 1123797 - 1123819 + g 75 -3.3 -5.20606 | opp_overlap 1123811, overlap 1123811 1123813 ATCAATTTTTGCATC GCCTTGTCG ATAAG CTCCAAGGC TTTTTCTTGGTGTTT TERM 1003 1124474 - 1124457 - G 93 -7.1 -5.52096 | overlap 1124447 AAATCCAATAAAAAA CTTATTG CAAG CAATAAG CATGAAATTTTTTTC TERM 1004 1124783 - 1124806 + r 87 -7.6 -4.9218 | opp_overlap 1124789, overlap 1124773 1124784 CTTTAGTATTTTATT TTAAAATGCT TTTG AGCATTTTAG TTTTTATAATCAATG TERM 1005 1124784 - 1124805 + r 78 -8.9 -3.54585 | opp_overlap 1124789, overlap 1124773 1124783 TTTAGTATTTTATTT TAAAATGCT TTTG AGCATTTTA GTTTTTATAATCAAT Hac_1307 1125203 - 1124850 - | hypothetical protein TERM 1006 1125637 - 1125667 + r 81 -10 -3.08522 | opp_overlap 1125647, overlap 1125636 1125647 CTCTTTAGCATGTGA TTATAAAAAATGCT TTT AGCATTTTTTACAA ATTTTAAAATCAATG TERM 1007 1125647 - 1125657 + r 76 -5.4 -5.08011 | opp_overlap 1125647, overlap 1125637 1125636 TGTGATTATAAAAAA TGCT TTT AGCA TTTTTTACAAATTTT TERM 1008 1125657 - 1125647 - R 80 -5.4 -5.31275 | opp_overlap 1125647 1125637 1125636 TGTGATTATAAAAAA TGCT TTT AGCA TTTTTTACAAATTTT Hac_1309 1127179 - 1125689 - | hypothetical protein TERM 1009 1127820 - 1127834 + H 81 -10 -3.02166 | opp_overlap 1127819, overlap 1127821 1127822 AACGCCCAAGCACAC GCTAGC TAA GCTAGC TAATTTGATTGAACG TERM 1010 1127917 - 1127933 + H 82 -10.9 -2.62983 | TCGAACCCGCGGCCC CGACCTT GGC AAGGTCG TGCTCTACCACTGAG TERM 1011 1128090 - 1128100 + H 76 -5.4 -5.00616 | opp_overlap 1128090 1128084, overlap 1128077 GCGCTAATAGAAAAA TGCT TTT AGCA TTTTTTACAACCCAG TERM 1012 1128100 - 1128090 - H 76 -5.4 -5.0916 | opp_overlap 1128077 1128090, overlap 1128084 GCGCTAATAGAAAAA TGCT TTT AGCA TTTTTTACAACCCAG TERM 1013 1128143 - 1128126 - H 90 -9.9 -3.97413 | overlap 1128124 CCCAGTAATAAAAGA GCTTGAC GCCA GTCAAGC AATAACCTCTTAAAA TERM 1014 1128292 - 1128282 - H 74 -4 -5.29885 | overlap 1128277 AATTTAAAAACAAAA TTTC TTT GAAA AATTAAAAATAAGGT Hac_1310 1128508 - 1128885 + | hypothetical protein TERM 1015 1129355 - 1129345 - g 70 -2.6 -5.09259 | CACTTTAAAAGAAAA TTTT GAA AAAA GGATTAGAACTTGCG TERM 1016 1129691 - 1129674 - g 79 -2.1 -5.55664 | overlap 1129675 CTACCATCAAAAAAA CTAAAAA CGAT TTTTTAA TGATGGGGGCTAAAG dadA 1128908 - 1130140 + | D-amino acid dehydrogenase subunit TERM 1017 1130130 - 1130147 + F 82 -8.5 -4.04587 | overlap 1130124 1130135 TCTTTTCTGCCTTTT TTAGGGA TTAA TCCCTAA TCTTTCTTTTTAACC TERM 1018 1130223 - 1130247 + G 85 -11.5 -3.44284 | opp_overlap 1130222, overlap 1130221 CGCTATTTATCTAAT TTTGTGTGGGG GAT CCCCATGCAAA TCTTATTGGTAGGCA dagA 1130184 - 1131536 + | amino acid transporter TERM 1019 1131918 - 1131907 - g 71 -4.4 -4.7416 | overlap 1131909 TTAAAATCTCAAAAA CACT TAAA AGTG CATCTTAAGATCGAT Hac_1313 1131544 - 1132677 + | hypothetical protein rplS 1133546 - 1133190 - | 50S ribosomal protein L19 trmD 1134242 - 1133568 - | tRNA (guanine-N(1)-)-methyltransferase rimM 1134800 - 1134258 - | 16S rRNA processing protein RimM TERM 1020 1134349 - 1134337 - G 86 -7.7 -4.96848 | overlap 1134317 TCTTTGATATAAAAA TCCCT ATA AGGGA TTAAAAAAATCTTAG Hac_1317 1135161 - 1134808 - | hypothetical protein rpsP 1135407 - 1135177 - | 30S ribosomal protein S16 ffh 1136825 - 1135479 - | signal recognition particle protein valS 1139459 - 1136841 - | valyl-tRNA synthetase Hac_1321 1139584 - 1139991 + | flagellar assembly protein FliW TERM 1021 1140153 - 1140164 + G 73 -4.4 -5.00616 | overlap 1140161 AGATAGCCCCCTATT TAGC GAGT GCTA TTTTTTCAACACGCA murG 1140001 - 1141062 + | N-acetylglucosaminyl transferase omp24 1141172 - 1143211 + | outer membrane protein 24 TERM 1022 1144439 - 1144381 - g 74 -9.9 -2.67425 | gap 1, overlap 1144390 1144395 AAATCAATACAACAT CGTTTTAAAGCAAATCTCTTGGAATCAG TTCA CTGAT-CCTAAAGACTTGCTCAAAAACA CTTCCAATAACTACC TERM 1023 1144430 - 1144390 - g 78 -9.2 -3.55548 | gap 1, overlap 1144381 1144395 CAACATCGTTTTAAA GCAAATCTCTTGGAATCAG TTCA CTGAT-CCTAAAGACTTGC TCAAAAACACTTCCA TERM 1024 1145763 - 1145751 - g 72 -5.5 -4.67968 | CCAACAAACAACAAA GCACC ACG AGTGC AACCACCACCGCAGC omp25 1143233 - 1146958 + | outer membrane protein 25 TERM 1025 1147158 - 1147172 + G 73 -2.8 -5.18355 | opp_overlap 1147158 AACGCTATTGATATA CACCAA AAA TTCGTG TTTTTACTTTTTAAG proC 1146972 - 1147745 + | pyrroline-5-carboxylate reductase TERM 1026 1148218 - 1148233 + G 72 -7.6 -3.82484 | opp_overlap 1148218, overlap 1148208 ATTTGGAAATCAAAA CGCTTT TAAA AAAGCG TTTGAGTTCTAATAT TERM 1027 1148233 - 1148218 - g 83 -7.6 -4.55128 | opp_overlap 1148218 1148208 ATTTGGAAATCAAAA CGCTTT TAAA AAAGCG TTTGAGTTCTAATAT fic 1147776 - 1148309 + | cell filamentation protein Fic Hac_1327 1148816 - 1148394 - | putative metalloprotease TERM 1028 1148554 - 1148571 + g 80 -7.7 -4.44448 | opp_overlap 1148554, overlap 1148555 TCATTTTCTAAACTA TGCCCTA ATTT TAGGGCG TTTGTTTGAGCTAGT TERM 1029 1148555 - 1148570 + g 72 -9 -3.25946 | opp_overlap 1148554, overlap 1148554 CATTTTCTAAACTAT GCCCTA ATTT TAGGGC GTTTGTTTGAGCTAG TERM 1030 1148874 - 1148858 - R 100 -10.9 -4.85195 | AAAAGAAGTTAAAAA GCCCTAA AAT TTAGGGC TTAAAAGATTAAGCG fldA 1149377 - 1148883 - | flavodoxin FldA Hac_1329 1150061 - 1149480 - | hypothetical protein Hac_1330 1150195 - 1150392 + | hypothetical protein TERM 1031 1150747 - 1150721 - g 73 -3.7 -5.07107 | overlap 1150724 GAAAGCGTGAAAAAA GAAGGCGATTT GTTTA AAATCACCACC ACTTCTAATGCAACT TERM 1032 1150744 - 1150724 - g 74 -6.2 -4.62085 | overlap 1150721 AGCGTGAAAAAAGAA GGCGATTT GTTTA AAATCACC ACCACTTCTAATGCA TERM 1033 1151318 - 1151298 - g 74 -9.7 -2.79505 | overlap 1151297 1151300 ATATTTTATTCAAAT CAGGAGCGA GCA TCGCTACTG CACTAAATCATGGCT trxB 1150403 - 1151374 + | thioredoxin reductase family protein TERM 1034 1151401 - 1151411 + T 76 -5.4 -5.0538 | opp_overlap 1151401 TGGGTGATAAAAAAA TGCT TTT AGCA TTTTTTACAATCCAA TERM 1035 1151411 - 1151401 - T 87 -5.4 -5.60993 | opp_overlap 1151401 TGGGTGATAAAAAAA TGCT TTT AGCA TTTTTTACAATCCAA TERM 1036 1151543 - 1151495 - T 89 -11.8 -3.26471 | gap 1, overlap 1151496 TTAGGGGGATATTAA GGGGGTTAAGGGGGAGAGTTATT TCAA AATA-CCCCCCCCCCTATCCCCT TAAGAGAATGAGTTT TERM 1037 1151542 - 1151496 - T 100 -15.3 -2.55668 | gap 1, overlap 1151495 TAGGGGGATATTAAG GGGGTTAAGGGGGAGAGTTATT TCAA AATA-CCCCCCCCCCTATCCCC TTAAGAGAATGAGTT permease 1151862 - 1151626 - | - - hypothetical protein permease 1152154 - 1151831 - | - - hypothetical protein Hac 1152699 - 1153268 + | Hac_1334 - COG0582L integrase TERM 1038 1153704 - 1153743 + T 76 -7.3 -4.30161 | gap 1, opp_overlap 1153704 1153706 1153707, overlap 1153706 1153707 ACCTTTAAACAGCAA TAG-CTCTATCGTTCGGT CAAGA GCCGAACGGTAGAGGTTG TTTAGTTTTCTATAA TERM 1039 1153740 - 1153706 - T 74 -8.6 -3.29837 | opp_overlap 1153706 1153704 1153707, overlap 1153704 1153707 CTTTAAACAGCAATA GCTCTATCGTTCGG TCAAGAG CCGAACGGTAGAGG TTGTTTAGTTTTCTA TERM 1040 1153706 - 1153740 + T 100 -11.5 -4.23876 | opp_overlap 1153704 1153706 1153707, overlap 1153704 1153707 CTTTAAACAGCAATA GCTCTATCGTTCGGT CAAGA GCCGAACGGTAGAGG TTGTTTAGTTTTCTA TERM 1041 1153739 - 1153707 - T 87 -12.1 -2.5742 | opp_overlap 1153706 1153704 1153707, overlap 1153706 1153704 TTTAAACAGCAATAG CTCTATCGTTCGG TCAAGAG CCGAACGGTAGAG GTTGTTTAGTTTTCT TERM 1042 1153707 - 1153739 + T 100 -15 -3.12699 | opp_overlap 1153707 1153706 1153704, overlap 1153706 1153704 TTTAAACAGCAATAG CTCTATCGTTCGGT CAAGA GCCGAACGGTAGAG GTTGTTTAGTTTTCT Hac 1155343 - 1153745 - | Hac_1335 - COG4889R helicase TERM 1043 1154599 - 1154587 - G 79 -7.7 -4.26079 | TTAAATTACCTAAAA TCTGC GAA GCAGA ATCGGCGGACGCATC TERM 1044 1154620 - 1154661 + g 100 -14 -3.93288 | gap 1, overlap 1154604 1154621 1154625 1154657 CGGACGCATCGCGGA CGCTAGTATCAGCTGGATA TATAT TATCCAGCTGATACT-GCA TTTCGTTAAATGCAG TERM 1045 1154621 - 1154660 + g 100 -17.5 -2.95652 | gap 1, overlap 1154604 1154620 1154625 1154657 GGACGCATCGCGGAC GCTAGTATCAGCTGGATA TATAT TATCCAGCTGATACT-GC ATTTCGTTAAATGCA TERM 1046 1154625 - 1154657 + g 100 -18 -2.71246 | overlap 1154621 1154620 GCATCGCGGACGCTA GTATCAGCTGGATA TATAT TATCCAGCTGATAC TGCATTTCGTTAAAT TERM 1047 1154657 - 1154676 + g 72 -9.4 -2.82516 | overlap 1154621 1154620 ATTATCCAGCTGATA CTGCATTT CGTT AAATGCAG TGTCATAGTAAAGCC TERM 1048 1154682 - 1154702 + g 78 -11.3 -2.88999 | overlap 1154684 TTAAATGCAGTGTCA TAGTAAAGC CAA GCTTTACTA TATGGTCTATACAAA TERM 1049 1154684 - 1154700 + g 73 -9.5 -2.99545 | overlap 1154682 AAATGCAGTGTCATA GTAAAGC CAA GCTTTAC TATATGGTCTATACA Hac 1158692 - 1155450 - | Hac_1336 - COG4889R helicase TERM 1050 1156374 - 1156388 + g 74 -5.8 -4.68593 | TCGCAAGGCTTGTAA GAATTT GGC AAATTC TTTTTGGATACTCGC TERM 1051 1157021 - 1157033 + g 76 -4.1 -5.1971 | overlap 1157022 GCTGGTCTTTGTCTT TTAGC CAA GCTAG TTTTTGGTTTTTAAT Hac 1159579 - 1159373 - | Hac_1337 - COG1942R putative tautomerase Hac 1160125 - 1159916 - | Hac_1339 - COG5055L hypothetical protein Hac 1160602 - 1160336 - | Hac_1340 - - hypothetical protein Hac 1161766 - 1161236 - | Hac_1341 - - hypothetical protein TERM 1052 1163045 - 1163095 + r 95 -10.7 -4.18164 | opp_overlap 1163045 1163048, overlap 1163048 TTATATTTTGATACA TAAGCGCGTTATTAAGGCAAC AAGATTAAC GATGCTTTAATAGTGCGCTTA TTGTTTTGGGGAATT TERM 1053 1163048 - 1163092 + r 83 -8 -4.20868 | opp_overlap 1163045 1163048, overlap 1163045 TATTTTGATACATAA GCGCGTTATTAAGGCAAC AAGATTAAC GATGCTTTAATAGTGCGC TTATTGTTTTGGGGA Hac 1163655 - 1163269 - | Hac_1342 - - hypothetical protein Hac 1164390 - 1163911 - | Hac_1343 - - hypothetical protein permease 1165070 - 1164696 - | - COG0477GEPR hypothetical protein permease 1165355 - 1165197 - | - - hypothetical protein TERM 1054 1166706 - 1166692 - g 74 -8.6 -3.51825 | TTAGCGCAAGCACAA GCCTTT ATG AAAGGC AAAAGTTATGAAGAA TERM 1055 1166779 - 1166790 + G 80 -5.8 -5.03314 | GCCAAAGATTTAGCC CACC ATAG GGTG TTTTTTGGCAATCGC pgi 1165417 - 1167054 + | hypothetical protein Hac_1347 1167071 - 1167685 + | hypothetical protein TERM 1056 1168164 - 1168149 - g 75 -3.2 -5.27938 | ATTTTCAAACAAAAA GGGC AAGCCCAA GCCC AACTTGTCCTAAAAG Hac_1348 1167696 - 1168841 + | type II restriction-modification methyltransferase xseA 1170141 - 1168879 - | exodeoxyribonuclease VII large subunit Hac_1350 1171197 - 1170154 - | zinc metalloprotease TERM 1057 1170927 - 1170941 + g 70 -2.8 -5.03314 | CAAGCAATATCCATA GCTTTT GAG AAGGGC TTTTTTGCACATAGC Hac_1351 1171877 - 1171197 - | hypothetical protein Hac_1352 1172298 - 1171870 - | hypothetical protein purA 1173530 - 1172295 - | adenylosuccinate synthetase TERM 1058 1172641 - 1172651 + g 83 -8.2 -4.4891 | opp_overlap 1172636 TCCAACCAACCGCAA CGCC TTG GGCG TTTTGTCGTCGTACC omp26 1175021 - 1173606 - | outer membrane protein 26 omp27 1176449 - 1175034 - | outer membrane protein 27 TERM 1059 1176012 - 1175987 - G 77 -6.3 -4.74103 | gap 1, overlap 1175990 1175991 GCCCTAACGCAAAAA CAACGCTTTTAG CCG CTAAAAGCA-TG CCGTCTGTGATATTG TERM 1060 1176010 - 1175990 - G 84 -9.1 -4.47888 | overlap 1175987 1175991 CTAACGCAAAAACAA CGCTTTTAG CCG CTAAAAGCA TGCCGTCTGTGATAT TERM 1061 1176009 - 1175991 - G 79 -10.4 -3.27648 | overlap 1175990 1175987 TAACGCAAAAACAAC GCTTTTAG CCG CTAAAAGC ATGCCGTCTGTGATA TERM 1062 1176821 - 1176831 + H 71 -3.2 -5.2112 | ATCCATCTTAAAAAG CGCT TTG AGTG TTTTTTGCTAGTATT oppC 1176856 - 1176996 + | - - ABC-type oligopeptide transport, permease component oppC fragment 1 oppC 1177009 - 1177254 + | - COG4239R ABC-type oligopeptide transport, permease component oppC fragment 2 oppC 1177278 - 1177466 + | - COG4239R ABC-type oligopeptide transport, permease component oppC fragment 3 TERM 1063 1177615 - 1177628 + GF 74 -3.9 -5.15381 | AGTGCTTGGGGTGAA TGATT TAAA AATCA TTTTTTCCATGTCTT oppC 1177430 - 1177657 + | - COG4239R ABC-type oligopeptide transport, permease component oppC fragment 3 oppC 1177657 - 1177818 + | - COG4239R ABC-type oligopeptide transport, permease component oppC fragment 5 oppD 1177833 - 1178177 + | - COG1123R ABC-type oligopeptide transport, ATP-binding component oppD fragment 1 oppD 1178120 - 1178416 + | - COG1123R ABC-type oligopeptide transport, ATP-binding component oppD fragment 2 TERM 1064 1178456 - 1178478 + F 71 -2 -5.43866 | opp_overlap 1178477 AGGTGAAGGATTTTA GCGTTTAT TATTTGC AAAAACGC TTTTTTTAGGACTTC oppD 1178519 - 1178839 + | - COG1123R ABC-type oligopeptide transport, ATP-binding component oppD fragment 3 TERM 1065 1178909 - 1178928 + G 80 -10 -3.55563 | GAGTGCCAAAGAGTG GCGATCGC TAGA GCGATTGC TTTAAAACCTAAAAT TERM 1066 1179163 - 1179143 - g 72 -6.9 -4.03141 | AGCACCATTAAAGAA GTGTTTGAA AAC CCCAAACAC GATTATACCAAGCGT oppD 1178840 - 1179199 + | - COG1123R ABC-type oligopeptide transport, ATP-binding component oppD fragment 4 Hac_1368 1179887 - 1179348 - | hypothetical protein Hac_1369 1180988 - 1179894 - | hypothetical protein deaD 1182491 - 1181007 - | ATP-dependent RNA helicase TERM 1067 1183495 - 1183479 - g 72 -7.3 -3.93057 | CTTAAAATCACTAAA GAGCCAT TAA ATGACTC TAAAAACGTGCAAGA TERM 1068 1183621 - 1183606 - g 75 -3.2 -5.25803 | AAGCCTTACAAAAAA TTGGCG TGAG CGCTAA AGGGATAGTTTCAAT flgI 1182666 - 1183691 + | flagellar basal body P-ring protein Hac_1372 1183688 - 1184005 + | hypothetical protein TERM 1069 1184154 - 1184130 - g 74 -9.5 -3.16654 | overlap 1184128 CAAAGAGAGCGAAGA TTTGTTAGAAA ATT TTTCCAACAAA AAAGACATGCAAGAA TERM 1070 1184911 - 1184925 + G 72 -5.8 -4.52143 | GTGAAGATTAAAGCG TTCATT CAA AATGAA TTTATTGTCTTTACC atoS 1184002 - 1185129 + | hypothetical protein TERM 1071 1185329 - 1185346 + F 77 -8.5 -3.75707 | TTTTTAATAGCTATC GCTTGAT TATC ATCAAGC TCTTTTAAATGTTTA TERM 1072 1185384 - 1185373 - f 81 -4.4 -5.44119 | opp_overlap 1185360 1185373 TTTATTTTAAAAAAA TGCT TTTG AGCA TTTTTAAAATTCTAT TERM 1073 1185846 - 1185834 - g 79 -6.3 -4.92363 | AAACACCTAGAAAAA GAGTT TAA AACTC TCTCCGACACCGCTG napA 1185522 - 1185956 + | neutrophil-activating protein A Hac_1376 1185974 - 1186258 + | hypothetical protein Hac_1377 1186275 - 1186646 + | hypothetical protein ispB 1186656 - 1187579 + | octaprenyl-diphosphate synthase TERM 1074 1188182 - 1188167 - g 84 -6.1 -5.31877 | ATTGAGGATAAAAAA GCCCT TGTGAT AGGGC TTGGCGAGATGTCTC hemA 1187579 - 1188922 + | glutamyl-tRNA reductase proS 1188926 - 1190659 + | prolyl-tRNA synthetase hemC 1190670 - 1191590 + | porphobilinogen deaminase TERM 1075 1191790 - 1191767 - g 79 -6.8 -4.77036 | gap 1 TCCTATTATGAAAAA GGCG-AGAAAA AAA TTCTCTACGCC CCTAAAATCAACCAT Hac_1382 1191590 - 1191955 + | hypothetical protein TERM 1076 1191985 - 1191959 - f 71 -5.2 -4.59773 | opp_overlap 1191961, overlap 1191961 CCCCATCCTTAAAAA CGCTTGATTCTA TGA TAGAATAAAGTG TCATGGTTTTTATTT TERM 1077 1193062 - 1193043 - g 73 -3.6 -5.13648 | overlap 1193044 CAAAGACAAAGAAAA CGCCATAA GGGT TTATGACA AAAGTTGTAAATTAG Hac_1383 1192063 - 1193124 + | hypothetical protein TERM 1078 1193229 - 1193213 - f 91 -8 -5.06505 | overlap 1193224 AATTACAGACAAAAA GCTTGC AAAAA GCAAGC GATAACCCCCTTGCA Hac_1385 1193240 - 1193437 + | hypothetical protein omp28 1193541 - 1194152 + | - - outer membrane protein 28 fragment 1 omp28 1194225 - 1194584 + | - - outer membrane protein 28 fragment 2 omp28 1194569 - 1194961 + | - - outer membrane protein 28 fragment 3 omp28 1195040 - 1195294 + | - - outer membrane protein 28 fragment 4 Hac_1390 1195464 - 1195688 + | hypothetical protein TERM 1079 1195694 - 1195682 - f 89 -7.7 -5.07567 | TTATATGTCAAAAAA CCCAT AAA ATGGG AATGACAAGCCGTTA Hac_1391 1196228 - 1196587 + | ABC-type multidrug transport system, ATPase component TERM 1080 1197030 - 1197040 + G 76 -5.4 -4.87665 | CGCATTGTTTTGTTT TTGC TTG GCAA TTTTTGTAGCTAGAA Hac_1392 1196587 - 1197195 + | ABC-type multidrug transport system, permease component TERM 1081 1197388 - 1197364 - T 88 -11.5 -3.1855 | overlap 1197367 TCGTTTAATAGTTAA TAAGGGGTAAG CCC CCTACCCCCTA AAACGCTAAACGCAT TERM 1082 1197385 - 1197367 - T 89 -11 -3.7347 | overlap 1197364 TTTAATAGTTAATAA GGGGTAAG CCC CCTACCCC CTAAAACGCTAAACG vacA 1207036 - 1197386 - | - vacuolating cytotoxin paralog VacA TERM 1083 1197808 - 1197822 + g 79 -4.2 -5.26119 | CAAGAGTGGTTTGAG GCTTGA TGA TCACGC TTTTGTTTTTAAACA TERM 1084 1199303 - 1199288 - G 72 -5.4 -4.57341 | opp_overlap 1199288 AATGGTGCCTAAAAA CGCAAA ATTA TTCGCG TTCACTTCTAGCGTT TERM 1085 1199503 - 1199487 - G 71 -3.7 -4.89393 | GAAATGTTAGAAAAA TCTTTAG AGA CAAAAGA AAGCTTGCCCTGATA TERM 1086 1206285 - 1206297 + g 72 -6.9 -3.95584 | opp_overlap 1206285 CCCTTGACATTAAAA CCTCC ATT GGGGG TTTGGTTGCTAAAAG Hac_1394 1207767 - 1207198 - | hypothetical protein acrB 1210850 - 1207764 - | cation/multidrug efflux pump protein TERM 1087 1208581 - 1208599 + g 73 -8.2 -3.62022 | ACAGAAACGCGCTTA TCATCAGG CAC TCTGATGA TTATGTCGTATTCTT Hac_1396 1211567 - 1210863 - | hypothetical protein TERM 1088 1211395 - 1211381 - G 70 -5 -4.57353 | opp_overlap 1211381 CTTGATTATACAAAA GCAATA AAA TATCGC CCTTTTTGACCACGC tolC 1213014 - 1211581 - | hypothetical protein TERM 1089 1212598 - 1212610 + g 84 -7.7 -4.77757 | ATAGTGCTTAAAGTC TAGGG TAT CCCTA TTTTCATTTTTAAAA TERM 1090 1212764 - 1212776 + g 73 -2.6 -5.2112 | TCATTCAACCCTAAA GCGG CCTTA TCGC TTTTTTCGTGGTATT hemE 1214046 - 1213027 - | uroporphyrinogen decarboxylase Hac_1400 1214729 - 1214172 - | hypothetical protein Hac_1401 1215382 - 1214726 - | endonuclease III TERM 1091 1215132 - 1215119 - G 72 -5.9 -4.36914 | overlap 1215120 TTTTTGGTTATAAAA CCCGC TAGG GCGGA CACAATCTGTGAGTT TERM 1092 1215600 - 1215617 + r 100 -8.5 -5.47964 | TTTTAAAAAGCTATC GCTTGAT TAAA ATCAAGC TTTTTATTATTTTAT TERM 1093 1215651 - 1215641 - R 71 -5.4 -4.62336 | opp_overlap 1215641 ATTTTATTGTAAAAA TGCT TTT AGCA TTTTTTAAATTCATT TERM 1094 1215641 - 1215651 + r 80 -5.4 -5.1848 | opp_overlap 1215641 ATTTTATTGTAAAAA TGCT TTT AGCA TTTTTTAAATTCATT TERM 1095 1215756 - 1215736 - R 100 -11.9 -4.83759 | AATTAAAGCGAAAAA GCCAACGCT TAA AGCGTTAGC CCCACACAAACACCT flaA 1217326 - 1215794 - | flagellin A fragment 1217701 - 1217961 + | - putative secretion/efflux ABC transporter,ATP-binding protein fragment 1 fragment 1218208 - 1218309 + | - putative secretion/efflux ABC transporter,ATP-binding protein fragment 2 fragment 1218400 - 1218891 + | COG1132V putative secretion/efflux ABC transporter,ATP-binding protein fragment 3 fragment 1218961 - 1219104 + | COG1132V putative secretion/efflux ABC transporter,ATP-binding protein fragment 4 mcp 1219168 - 1220469 + | methyl-accepting chemotaxis protein (MCP) bioF 1220483 - 1221604 + | 8-amino-7-oxononanoate synthase TERM 1096 1221938 - 1221928 - g 79 -6.8 -4.77036 | opp_overlap 1221927, overlap 1221937 CGCTATGATTAAAAA CGCT CAA AGCG GTCGTTACACCGAAG TERM 1097 1222212 - 1222224 + G 84 -7.7 -4.84359 | TGTTAGTCGCCTTGC CTAGG GCT CCTAG TTTTTATGACCCTAC pbp 1221605 - 1223584 + | penicillin-binding protein Hac_1412 1224165 - 1223587 - | tumor necrosis factor alpha-inducing protein TERM 1098 1223931 - 1223948 + g 70 -6.3 -4.21184 | gap 1 GTGCCACCCTCATTG TCGCC-CT TTT AGTGGCGA TTGTTTCTATCTCTT Hac_1413 1224325 - 1224528 + | hypothetical protein Hac_1414 1226112 - 1224640 - | hypothetical protein Hac_1415 1226285 - 1226121 - | hypothetical protein mod 1228236 - 1226392 - | adenine specific DNA methylase TERM 1099 1227294 - 1227306 + g 70 -7.7 -3.60234 | opp_overlap 1227285 AAAACATACCCACAG GTGGA TAA TCCAC TTTGCCAGTATATGG TERM 1100 1227880 - 1227892 + g 71 -3.4 -5.0666 | ATTGTAAGGCGGATC GATG TAAAC CATC TTTATTTTTTCGCTG res 1231192 - 1228253 - | type III restriction enzyme R protein TERM 1101 1231358 - 1231318 - R 82 -7.8 -4.4768 | opp_overlap 1231324 1231325, overlap 1231325 TATCAAGAGAAGAAA TTCAAAATGAGAGTTTAG AAGCG CTAACCTCTCACTTTCAA AGCTTCTAAAGCGTG TERM 1102 1231351 - 1231325 - R 85 -8.1 -4.43755 | opp_overlap 1231324 1231325, overlap 1231318 AGAAGAAATTCAAAA TGAGAGTTTAG AAGCG CTAACCTCTCA CTTTCAAAGCTTCTA oorC 1231901 - 1231341 - | 2-oxoglutarate-acceptor oxidoreductase subunit OorC TERM 1103 1231405 - 1231427 + g 70 -2.6 -5.03715 | AAGGCTTTTTTGTTT GTTTCAGCGA CTT TTGCAGGGAC TTTTTTAAGCATGGT oorB 1232722 - 1231901 - | 2-oxoglutarate-acceptor oxidoreductase subunit OorB oorA 1233851 - 1232724 - | 2-oxoglutarate-acceptor oxidoreductase subunit OorA TERM 1104 1233235 - 1233245 + g 75 -3.2 -5.24531 | overlap 1233224 TGTGCAACCCCATAA GGCT TGT AGTC TTTTTTATCGCCCAT oorD 1234192 - 1233851 - | 2-oxoglutarate-acceptor oxidoreductase subunit OorD pabC 1235367 - 1234372 - | aminodeoxychorismate lyase TERM 1105 1235320 - 1235330 + Gg 90 -2.6 -5.93809 | ATCTAAAAAAGTATT TAAT GTC ATTA TTTTTTTTGTGGCAG TERM 1106 1237076 - 1237086 + GH 73 -4 -5.08824 | TCTACAAGCGATTTT TCAA ACA TTGA TTTTTTCGCTAAAGA Hac_1425 1235285 - 1238221 + | hypothetical protein TERM 1107 1238324 - 1238338 + G 80 -7.8 -4.37734 | opp_overlap 1238324 1238323, overlap 1238332 TTGGTATCCACGAAG GGGTGC AAT GCACTC TTTTGCATTCTTCTA feoA 1238218 - 1238448 + | ferrous iron transport protein A nth 1238450 - 1239100 + | endonuclease III fliN 1239178 - 1239549 + | flagellar motor switch protein TERM 1108 1239863 - 1239829 - g 83 -5.3 -5.45726 | gap 1, opp_overlap 1239837 1239859, overlap 1239861 TAGACTCTAAAAAAA CAATGGATTTTAAAGA AGCC TCTTTAAA-TGCATTG GAAATGTTTTCCTAC TERM 1109 1239931 - 1239916 - g 74 -6.2 -4.5366 | CTAAAAAAGCCAAAA TGGATT TAGA AATCCA AGCTTCAAACAGCAA TERM 1110 1240090 - 1240066 - g 71 -9.3 -2.53343 | opp_overlap 1240072, overlap 1240065 1240072 ATATTGACGATCAAT CCCAAAGCCCT TTG AGCGCTTTAGG GTTAAAATCCCCACT Hac_1429 1239546 - 1240436 + | hypothetical protein Hac_1430 1240450 - 1241331 + | hypothetical protein TERM 1111 1241370 - 1241395 + G 70 -8.9 -3.08032 | opp_overlap 1241370, overlap 1241368 TTTTGACCCCATAGA CGCCCATTTGC ATGT GCGAGAGGGCG TGCTTTTAAAAGCGG TERM 1112 1241707 - 1241721 + G 71 -4.2 -4.7878 | opp_overlap 1241706 1241707 GAAATTTTAGAAGAC GCCCAA AAA TTAGGC TTTATTTTATGCATC pyrC 1241341 - 1242360 + | dihydroorotase TERM 1113 1242916 - 1242928 + G 72 -5.5 -4.66938 | opp_overlap 1242914 1242916, overlap 1242914 CTAAACCCTTAAACA CCACT GAT GGTGG TTTTGTGTTGCCACT Hac_1432 1242411 - 1243454 + | neuraminidase (sialidase) TERM 1114 1243729 - 1243741 + G 79 -4.1 -5.46129 | AACCTTGCAATCTTA TAGCG TCA TGCTA TTTTTTAATTTGTTA Hac_1433 1243460 - 1244011 + | hypothetical protein TERM 1115 1244048 - 1244060 + G 73 -2.7 -5.29846 | overlap 1244049 1244054 GCGCCCTTTTTTCGC TCTTT TTA AAAGG TTTTTATTTCACCTT TERM 1116 1245012 - 1244995 - g 79 -6.3 -5.01732 | opp_overlap 1244995 1244998 AACTTGGTTAAAAAA GAACATG CCTA CATGCTC TCTTCTTTTATTGAA TERM 1117 1245588 - 1245568 - g 70 -2.5 -5.16237 | opp_overlap 1245568 AATTTCATCAAAAAA GCTAGCCAA AAA TTCCCTAGC TCGCTTTTTATCATC Hac_1434 1244017 - 1246047 + | hypothetical protein folD 1246301 - 1247179 + | methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase TERM 1118 1247324 - 1247338 + G 77 -5.8 -4.78237 | TATGAGGGCGATATG CTTTTT GTT AAAAAG TTTTCTTATGGCATA lepB 1247180 - 1248052 + | hypothetical protein Hac_1437 1248061 - 1248759 + | hypothetical protein rpiB 1248780 - 1249241 + | ribose-5-phosphate isomerase B Hac_1439 1249287 - 1249619 + | hypothetical protein TERM 1119 1249923 - 1249911 - g 78 -3.3 -5.4505 | GCCTGTAAGAAAAAA GGGCA AAC TCCCC GCACACACCCTGTCT apt 1249654 - 1250193 + | adenine phosphoribosyltransferase Hac_1441 1250205 - 1250783 + | hypothetical protein TERM 1120 1250873 - 1250858 - g 83 -5.4 -5.42265 | overlap 1250859 1250860 TCAAATTAGAAAAAA GCGCTT TTGA AAACGC AAAAGCAGAATGCAG TERM 1121 1251142 - 1251166 + G 72 -7.2 -3.94933 | opp_overlap 1251142, overlap 1251141 CACTCCAAAGATAAC GCGCTTTTAG AAAAC TTGAAAGCGC TGTTTTTGGGCTTGA TERM 1122 1251254 - 1251244 - g 71 -6.8 -4.17316 | opp_overlap 1251244 AGCGTTTTAAAAGAA GCGA TTA TCGC TTTAGAGTTGCACAA pepA 1250833 - 1252323 + | leucyl aminopeptidase TERM 1123 1252845 - 1252804 - g 72 -4.7 -4.69464 | gap 1, opp_overlap 1252814, overlap 1252796 1252814 AAAAGACGCTAAAAA TCTTTTAGAATGCGCTTTGA GTT TAAAAACGCATT-TAGAAGA ATTAAAACCGGCGAA Hac_1443 1252325 - 1253425 + | translation-associated GTPase Hac_1444 1253463 - 1253615 + | hypothetical protein fragment 1253594 - 1253851 + | - hypothetical protein TERM 1124 1254045 - 1254022 - g 93 -11.2 -5.00616 | opp_overlap 1254013 1254022 CGTTTGTTTAAAAAA GGTTTTTTGA ATAT TCAAAAAACC TTTAAATGGTCGAGT TERM 1125 1254022 - 1254045 + G 83 -11.2 -3.68529 | opp_overlap 1254022, overlap 1254013 CGTTTGTTTAAAAAA GGTTTTTTGA ATAT TCAAAAAACC TTTAAATGGTCGAGT fragment 1253887 - 1254333 + | - hypothetical protein TERM 1126 1255117 - 1255103 - g 78 -5.6 -5.07486 | GATCCTGAAGAAAAA GGCAAG CCA CTAGCC CAAACTTTAGGCAAC TERM 1127 1256005 - 1255976 - g 90 -2.9 -5.89827 | gap 1, overlap 1255978 AATTACGAAAAAAAA GATGT-CCCTCCTT TTA AAGAAGGGCAAACC CCAAAAACCATTAAA TERM 1128 1256001 - 1255978 - g 77 -6.8 -4.5787 | gap 1, overlap 1255976 TTACGAAAAAAAAGA TGTCCCTCCTT TTA AAGAAGGG-CA AACCCCAAAAACCAT TERM 1129 1256653 - 1256637 - g 73 -6.5 -4.32034 | opp_overlap 1256637 CTATCACTACCAAAA CGGCG GGCATGA CGCCG TGGTATTGGGTGTGG fecA 1254473 - 1256845 + | iron(III) dicitrate transport protein TERM 1130 1256861 - 1256871 + T 83 -8.2 -4.16921 | opp_overlap 1256847 1256860 1256859 ACCCCTCTAATAAGC CCCC AAA GGGG TTTTGAGCGTTATTC Hac_1450 1258468 - 1257548 - | hypothetical protein Hac_1451 1259138 - 1258704 - | hypothetical protein TERM 1131 1259289 - 1259306 + r 95 -8.5 -5.26875 | overlap 1259274 GAGGTAGAAACTATC GCTTGAT GAAA ATCAAGC TTTTTTAATTGCAAA omp29 1260340 - 1259480 - | outer membrane protein 29 rplT 1260873 - 1260523 - | 50S ribosomal protein L20 infC 1261751 - 1261140 - | translation initiation factor IF-3 thrS 1263586 - 1261748 - | threonyl-tRNA synthetase TERM 1132 1262071 - 1262061 - G 77 -6.8 -4.55295 | GGTGCGACAAAGAAA GGGA AAT TCCC CCAAAAATGTTCGCT Hac_1458 1263771 - 1263631 - | hypothetical protein TERM 1133 1265654 - 1265634 - g 73 -8.5 -3.6869 | TATACTAACCCTAAA GATTTTTTT GTG AAAAAAATC GCTGAAGGCATTGGC TERM 1134 1265802 - 1265783 - g 72 -5 -4.79174 | gap 1 ACCCAATGAAGAAAA CCCCAT-GC TTG GCTATAGGG GGGCTAGTCGGTATT ppsA 1263948 - 1266368 + | phosphoenolpyruvate synthase Hac_1460 1266560 - 1267270 + | hypothetical protein wbyL 1268012 - 1267242 - | glycosyl transferase TERM 1135 1267329 - 1267316 - G 78 -5.3 -5.13521 | AAAGCATGGAAAAAA CATTC GCTT GAATG CCGTTTTCTTTGCAC tlpB 1269740 - 1268043 - | hypothetical protein TERM 1136 1268743 - 1268756 + g 82 -8.1 -4.32857 | GCGCTCATCACGCTA GCCAC ATCA GTGGC TTTATCTTTCACAGA TERM 1137 1269785 - 1269772 - R 71 -6.7 -4.06502 | opp_overlap 1269772, overlap 1269768 CATTTTTAAATCAAA CCCTA ATTT TAGGG TTTAGCTTCTAAATG TERM 1138 1269864 - 1269842 - R 71 -5.6 -4.65819 | overlap 1269836 1269843 1269844 1269847 AAAATTAAATTAAAA CCCAATGGTT TGA AACCACTGAA AATAGAAAACCAACG luxS 1270496 - 1270023 - | S-ribosylhomocysteinase metB 1271674 - 1270532 - | cystathionine gamma-synthase/cystathionine beta-lyase TERM 1139 1271277 - 1271288 + g 79 -2.2 -5.64421 | AGGGCTTTGGTGTTG GGTT TAAT AGCC TTTTTTATTTGAGGT cysK 1272614 - 1271700 - | hypothetical protein TERM 1140 1272440 - 1272452 + g 79 -7.7 -4.32067 | TGGGAGTGATTTTGT GCGTT CTA AACGC TTCTTTTATGAGATA Hac_1466 1272692 - 1272856 + | hypothetical protein Hac_1467 1273165 - 1272881 - | hypothetical protein TERM 1141 1273109 - 1273095 - G 70 -2.8 -5.14819 | AAACCAAAAAATAAA GTTGTC CAA GAAAAC CCCACCAATCCTTTT TERM 1142 1273389 - 1273360 - R 79 -8 -4.14725 | gap 1, opp_overlap 1273365 1273387, overlap 1273362 1273365 GATGGAAATTAGAAA GACAAGCGGATTT TTATC AAATCCGCTCG-C TTAAAAGAAGTTTTA TERM 1143 1273388 - 1273362 - R 95 -11.7 -3.66216 | opp_overlap 1273365 1273387, overlap 1273360 1273365 TGGAAATTAGAAAGA CAAGCGGATTT TTATC AAATCCGCTCG CTTAAAAGAAGTTTT TERM 1144 1273385 - 1273365 - R 83 -9.8 -3.94393 | opp_overlap 1273365, overlap 1273362 1273360 AAATTAGAAAGACAA GCGGATTT TTATC AAATCCGC TCGCTTAAAAGAAGT TERM 1145 1273365 - 1273385 + r 74 -9.8 -2.52543 | opp_overlap 1273365 1273362 1273360 AAATTAGAAAGACAA GCGGATTT TTATC AAATCCGC TCGCTTAAAAGAAGT TERM 1146 1273387 - 1273408 + r 85 -8.1 -4.68103 | opp_overlap 1273362 1273360 TTTATCAAATCCGCT CGCTTAAAA GAAG TTTTAGGCG TTTTATTCCACTTCC dnaK 1275273 - 1273411 - | molecular chaperone DnaK grpE 1275861 - 1275301 - | GrpE protein hrcA 1276661 - 1275858 - | heat-inducible transcription repressor TERM 1147 1276306 - 1276316 + g 78 -3.2 -5.40072 | ACTCTTTCTAAACGC TCCA AAC TGGG TTTTTTTAACAAAAC TERM 1148 1276995 - 1277015 + G 70 -6.9 -3.86822 | TTAGAAAGGGTTTTT TTGGGCTTT ATC AAGGCTCAA TTTCTGCACGCATTG Hac_1471 1276901 - 1277539 + | hypothetical protein Hac_1472 1277560 - 1277862 + | hypothetical protein Hac_1473 1279755 - 1277872 - | hypothetical protein TERM 1149 1278229 - 1278239 + g 100 -5.4 -5.88197 | TTTTAAAAACACTTT CTCA ATT TGAG TTTTTTTCTCTTTGG TERM 1150 1279785 - 1279774 - R 86 -7.2 -4.91712 | opp_overlap 1279773 1279778, overlap 1279776 TCTAACTTATAAAAA GGGC TAAC GCCC CTTAGCTCAAAGGGC flaB 1281347 - 1279803 - | flagellin B TERM 1151 1283010 - 1283027 + G 74 -9.1 -3.62096 | opp_overlap 1283009 1283010 GAAAAAAAGCAAATC CGCGCTT TAGA GAGCGCG TTTAAAGTGATAGAG TERM 1152 1283086 - 1283106 + G 70 -8.3 -3.25223 | opp_overlap 1283086 1283082 1283083, overlap 1283069 TGGATTCCAAATTCA GCGCTTCTT TAG AAGAAGAGC TTGATAATATCGCTC topA 1281528 - 1283738 + | DNA topoisomerase I TERM 1153 1284115 - 1284129 + G 71 -3.6 -4.86731 | CAAGCCTTAAAGGAA TTTGAC ATC GTTAAA TTTTCTTTAGACGCC Hac_1476 1283746 - 1284657 + | hypothetical protein Hac_1477 1286086 - 1284980 - | hypothetical protein TERM 1154 1285134 - 1285150 + g 72 -5.9 -4.37734 | opp_overlap 1285128, overlap 1285128 TCTTCATAACTTAAG GGGTTAA GAT TTAACTC TTTTAAATTATTGTA mcp 1288113 - 1286086 - | hypothetical protein TERM 1155 1287140 - 1287125 - G 70 -7.6 -3.6003 | GAAACGATTTCTAAA CGATTG CTCA CAATCG CTCGCATTAAGAAAG TERM 1156 1287639 - 1287650 + g 70 -5.8 -4.34402 | overlap 1287637 GCCCATAAACTTCCT TGCC ATCA GGCA TTTTCCTATAAAAAG TERM 1157 1287977 - 1287962 - G 70 -7.6 -3.60792 | opp_overlap 1287969 1287970 1287971, overlap 1287940 1287971 TCCTTAACCTTGAAA TGCAAG CTAT CTTGCA TGGAATGCAAGGCGT TERM 1158 1287969 - 1287991 + g 71 -3.4 -5.09259 | opp_overlap 1287962 1287971, overlap 1287970 1287971 CCTTGAAATGCAAGC TATCTTGCAT GGA ATGCAAGGCG TTTTCTTTTAAAATC TERM 1159 1288139 - 1288161 + H 76 -8.5 -3.48288 | opp_overlap 1288139 1288138 CACTATAATAAAATT TTTTGCCCG TTCAT TGGGCAAAA TTCTAATCTCCATTA TERM 1160 1289619 - 1289605 - g 93 -4.2 -5.89827 | overlap 1289616 AACGAGCAAAAAAAA GACGAT AAA ACCGCC CTAGAAGCGTTAAAA thrC 1288291 - 1289763 + | threonine synthase Hac_1480 1289869 - 1290579 + | hypothetical protein TERM 1161 1290590 - 1290614 + T 79 -7.1 -4.38712 | opp_overlap 1290590 TGTGATCTCTTATAA GCGTTTGGGTG GTT TGCCCAAAGGC TTTTCTAACACTAGC Hac_1481 1291773 - 1290829 - | 2-hydroxyacid dehydrogenase Hac_1482 1291845 - 1292357 + | hypothetical protein TERM 1162 1292584 - 1292567 - T 73 -7.7 -3.72027 | ATTCTCCACCAATAA GAGTTGG TGCC CCAACCC TATGAATATTGATAA ISHa1152 1292778 - 1292680 - | Hac_1483 - - ISHa1152 transposase B fragment 3 TERM 1163 1292726 - 1292736 + g 76 -4 -5.25803 | GGCAATTTGGCTTGT TTCT TAA AGAA TTTTTTATACGCCTT ISHa1152 1292901 - 1292800 - | Hac_1485 - - ISHa1152 transposase B fragment 2 ISHa1152 1292995 - 1292882 - | Hac_1486 - - ISHa1152 transposase B fragment 1 ISHa1152 1293368 - 1292964 - | COG1943L ISHa1152 transposase A TERM 1164 1293562 - 1293552 - R 75 -8.2 -3.60971 | opp_overlap 1293544 ATTTTAACGCCTAAA GGCG TTT CGCC AACTATCCCCATGGC Hac_1488 1293734 - 1293615 - | hypothetical protein omp30 1293739 - 1294389 + | - - outer membrane protein 30 fragment 1 omp30 1294443 - 1294892 + | - - outer membrane protein 30 fragment 2 omp30 1294940 - 1295704 + | - - outer membrane protein 30 fragment 3 Hac_1493 1296648 - 1295815 - | hypothetical protein TERM 1165 1296166 - 1296147 - G 82 -4.9 -5.36441 | overlap 1296148 GTGGGATAGAAAAAA TGCCGGT AATAAA ACCGGCG AGCATCAAAATCCCA TERM 1166 1296165 - 1296148 - G 75 -8.4 -3.81141 | overlap 1296147 TGGGATAGAAAAAAT GCCGGT AATAAA ACCGGC GAGCATCAAAATCCC TERM 1167 1296729 - 1296739 + r 71 -5.4 -4.63527 | opp_overlap 1296729 1296731 TGTTGATCTTAAAAA TGCT TTT AGCA TTTTTAAAATGATCA TERM 1168 1296739 - 1296729 - R 71 -5.4 -4.62069 | opp_overlap 1296729, overlap 1296731 TGTTGATCTTAAAAA TGCT TTT AGCA TTTTTAAAATGATCA TERM 1169 1296776 - 1296759 - R 76 -8.5 -3.54516 | overlap 1296752 TAAAATGATCAAAGA GCTTGAT TTTC ATCAAGC GATAACCCCTTGAAA TERM 1170 1296859 - 1296835 - R 100 -11.5 -4.09739 | overlap 1296856 TTAAGGGGGTTAAAA GGGGGTATTAT CGC AAAATACCCCC TAACCTCTTAAGAGA msrA 1298132 - 1297098 - | hypothetical protein TERM 1171 1298344 - 1298361 + r 76 -8.5 -3.55486 | overlap 1298356 TTTCAAGGGGTTATC GCTTGAT GAAA ATCAAGC TCTTTGATATTAGAT radA 1299754 - 1298408 - | DNA repair protein RadA nifU 1300747 - 1299767 - | nifU-like protein nifS 1301932 - 1300769 - | hypothetical protein TERM 1172 1301636 - 1301656 + g 71 -3.3 -5.03145 | ATGTTCTGCAACCGT GGTAACAAT ATG ATTCTTGCC TTTTTTCAAGCATTC Hac_1499 1302590 - 1302135 - | hypothetical protein Hac_1500 1302740 - 1303291 + | hypothetical protein Hac_1501 1304501 - 1303359 - | hypothetical protein TERM 1173 1303781 - 1303771 - G 71 -4 -4.96848 | opp_overlap 1303771 TTGGGGATATAAAAA CTTT CAT AAAG CTTCTTAGCGTCATA dxr 1305318 - 1304578 - | - COG0743I 1-deoxy-D-xylulose 5-phosphate reductoisomerase fragment 2 TERM 1174 1304814 - 1304798 - GR 74 -8.7 -3.36175 | opp_overlap 1304791 AACAAATCTTTATAA CGCCACA AAG TGTAGCG CTCTAAATCAATTGG dxr 1305670 - 1305272 - | - COG0743I 1-deoxy-D-xylulose 5-phosphate reductoisomerase fragment 1 cdsA 1306471 - 1305671 - | hypothetical protein TERM 1175 1305800 - 1305820 + g 73 -3.9 -5.09259 | overlap 1305801 CCCAGGTAAAATCTT ACCGCTATC CTT GATACCGGC TTTTCTTTTCAAATA TERM 1176 1306258 - 1306227 - G 75 -8.2 -3.76402 | gap 1, opp_overlap 1306214 ATTGCACCTATTAAA GTGCATTCT-ATGGG GCG CCCATTAAAATACAC CGCTACCCATGACAA Hac_1505 1308141 - 1306480 - | sodium-dependent transporter TERM 1177 1306756 - 1306741 - G 74 -6 -4.60889 | opp_overlap 1306740, overlap 1306743 AATCACCGGTAAAAA CGCCGC AGCG GTGGCG GTGTTAGAAGTGATT TERM 1178 1307871 - 1307859 - G 73 -4.1 -5.02231 | TAAAAACACTAAAAA TCACC AAA GGTAA AAGCGCGGTTGCGGG TERM 1179 1308691 - 1308681 - g 78 -5.4 -5.14477 | TACAGAGCTAAAAAA GTGA TCA TCAC CACAGGCACTTTTTT TERM 1180 1308757 - 1308740 - g 70 -6.3 -4.30576 | opp_overlap 1308749, overlap 1308748 TGGCGAGCACCAAAA CCAAAAC GGGC GCTTTGG GGAAAACGCTTCTAA gidA 1308237 - 1310102 + | tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA dapE 1310113 - 1311264 + | succinyl-diaminopimelate desuccinylase TERM 1181 1311415 - 1311458 + T 82 -6.2 -4.93696 | gap 1, opp_overlap 1311423 1311428, overlap 1311416 1311423 1311425 1311428 AATAAAATTTTAGCC CCAATAAAGTCAAGCTAAACA CTG TGTTTAGC-TGGCTTTGATGC TTTTTAGTGTTTGAA TERM 1182 1311416 - 1311457 + T 80 -9.7 -3.55133 | gap 1, opp_overlap 1311423 1311428, overlap 1311415 1311423 1311425 1311428 ATAAAATTTTAGCCC CAATAAAGTCAAGCTAAACA CTG TGTTTAGC-TGGCTTTGATG CTTTTTAGTGTTTGA TERM 1183 1311423 - 1311450 + T 82 -8.6 -3.96337 | gap 1, opp_overlap 1311423 1311428, overlap 1311416 1311415 1311425 1311428 TTTAGCCCCAATAAA GTCAAGCTAAACA CTG TGTTTAGC-TGGC TTTGATGCTTTTTAG TERM 1184 1311450 - 1311423 - T 70 -6.4 -4.16842 | gap 1, opp_overlap 1311423 1311416 1311415 1311425 1311428, overlap 1311428 TTTAGCCCCAATAAA GTCAAGCTAAACA CTG TGTTTAGC-TGGC TTTGATGCTTTTTAG TERM 1185 1311425 - 1311449 + T 79 -10.1 -2.96718 | opp_overlap 1311423 1311428, overlap 1311423 1311416 1311415 1311428 TAGCCCCAATAAAGT CAAGCTAAACA CTG TGTTTAGCTGG CTTTGATGCTTTTTA TERM 1186 1311428 - 1311446 + T 80 -10.4 -2.6989 | opp_overlap 1311423 1311428, overlap 1311425 1311423 1311416 1311415 CCCCAATAAAGTCAA GCTAAACA CTG TGTTTAGC TGGCTTTGATGCTTT TERM 1187 1311446 - 1311428 - T 85 -10.4 -3.37761 | opp_overlap 1311428 1311425 1311423 1311416 1311415, overlap 1311423 CCCCAATAAAGTCAA GCTAAACA CTG TGTTTAGC TGGCTTTGATGCTTT TERM 1188 1311584 - 1311558 - T 71 -7.5 -3.53091 | gap 1 AGGCTTGTGTTTAAA GGGTTTAAAGCA GTTC TG-TTTAAACCC CTAAAAAAGAGTTTT htpG 1313470 - 1311605 - | heat shock protein 90 TERM 1189 1312209 - 1312231 + g 75 -2 -5.48623 | overlap 1312220 TCTTTTAGATTCTCT TTGTATTCTT TTA AAGAAATCAA TTTTTCTTTGTCTTT TERM 1190 1313200 - 1313210 + g 76 -5.4 -4.88067 | TCGTGCCTAAATGCT CGAT CAA ATCG TTTTTATCCATGCCT TERM 1191 1313223 - 1313250 + g 86 -5.6 -5.65177 | TCGTTTTTATCCATG CCTATACCATTA TCTT TAATGGTTAAGG TTTTTTTCTGGCTAT TERM 1192 1313972 - 1314004 + G 70 -8.5 -3.38072 | overlap 1313973 ACATGGAGCTTTTTG TGTTTTGTGAGGATT TAG AATCCACGCAAAACC TTGATCTTGGCTACC TERM 1193 1313973 - 1314003 + G 85 -12 -2.62522 | overlap 1313972 CATGGAGCTTTTTGT GTTTTGTGAGGATT TAG AATCCACGCAAAAC CTTGATCTTGGCTAC fucT 1313638 - 1314102 + | - - alpha-1,2-fucosyltransferase fragment 1 fucT 1314099 - 1314230 + | - - alpha-1,2-fucosyltransferase fragment 1 Hac_1512 1315073 - 1314237 - | DNA methyltransferase hrgA 1315783 - 1315091 - | - COG2958S HrgA protein fragment 2 hrgA 1316093 - 1315752 - | - - HrgA protein fragment 1 TERM 1194 1316169 - 1316200 + H 76 -8.8 -3.53279 | overlap 1316168 GCGGATTGATAGGGT TTAGGCTGGGTG TCTCTCTT CACCCAACCTAA TATTATATTTGTAAA fabD 1316531 - 1317460 + | malonyl CoA-acyl carrier protein transacylase TERM 1195 1317888 - 1317875 - g 78 -3.1 -5.47218 | CCCTAGCTAAAAAAA TCGCT AACG AGCAA AATATTACGCTCAAA Hac_1516 1317457 - 1318167 + | 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase TERM 1196 1318347 - 1318364 + F 79 -8.5 -3.95309 | TTTTAATAAATTATC GCTTGAT TAAA ATCAAGC TCTTTATTATTTTAT TERM 1197 1318389 - 1318400 + F 81 -4.4 -5.47821 | opp_overlap 1318389 TTTTATTGTAAAAAA TGCT TTTG AGCA TTTTTTTAACTCCAT TERM 1198 1318400 - 1318389 - f 73 -4.4 -5.0538 | opp_overlap 1318389 TTTTATTGTAAAAAA TGCT TTTG AGCA TTTTTTTAACTCCAT TERM 1199 1318598 - 1318585 - g 72 -2.3 -5.1963 | GCTAACGAAGAAAAA GCCCC CAAA AGAGC TAAAACAGAAGCCAA TERM 1200 1320360 - 1320349 - g 83 -7.2 -4.89339 | opp_overlap 1320348 AACGAGCGAGAAAAA GCGG TGAT CCGC ATGCGTTTTGGGCTT rpoD 1318546 - 1320525 + | RNA polymerase sigma factor RpoD Hac_1518 1320545 - 1321960 + | hypothetical protein TERM 1201 1322173 - 1322185 + G 70 -7.7 -3.65812 | opp_overlap 1322173 AAGCTAATTCGCAAA CCATC CAT GATGG TTCTATTGAAACGAA TERM 1202 1322185 - 1322173 - g 70 -7.7 -3.61536 | opp_overlap 1322173 AAGCTAATTCGCAAA CCATC CAT GATGG TTCTATTGAAACGAA TERM 1203 1322733 - 1322751 + G 79 -8.8 -3.91317 | overlap 1322736 GGCTTAGATTTAGGG TGCTTGCC TGT GGCGGGCA GTTTTTATTTTGTGC TERM 1204 1322736 - 1322752 + G 90 -6.5 -5.54907 | overlap 1322733 TTAGATTTAGGGTGC TTGCCTG TGG CGGGCAG TTTTTATTTTGTGCC Hac_1519 1322013 - 1323365 + | malate dehydrogenase (acceptor) Hac_1520 1323367 - 1323555 + | hypothetical protein rplM 1323834 - 1324259 + | 50S ribosomal protein L13 rpsI 1324256 - 1324645 + | 30S ribosomal protein S9 TERM 1205 1324666 - 1324685 + F 71 -5.6 -4.64595 | overlap 1324655 1324654 TTTACTCCCCTTTTT GGGGGGGC TTTG GCTCTCTC TTATTTTATTTATTT mcp 1324790 - 1326811 + | hypothetical protein TERM 1206 1327035 - 1327066 + T 87 -7.5 -4.80959 | opp_overlap 1327034 1327037 1327044, overlap 1327037 1327044 GCCCTTTTATAAGAT TATAAAAAACGCT TTTTCT AGCGTTTTTTAAA TTTTGTTATCAATTC TERM 1207 1327064 - 1327037 - T 79 -10.1 -2.80074 | opp_overlap 1327035 1327037 1327044, overlap 1327034 1327044 CCTTTTATAAGATTA TAAAAAACGCT TTTTCT AGCGTTTTTTA AATTTTGTTATCAAT TERM 1208 1327037 - 1327064 + T 77 -10.1 -2.6741 | opp_overlap 1327037 1327034 1327044, overlap 1327035 1327044 CCTTTTATAAGATTA TAAAAAACGCT TTTTCT AGCGTTTTTTA AATTTTGTTATCAAT TERM 1209 1327057 - 1327044 - T 77 -3.8 -5.36965 | opp_overlap 1327037 1327035 1327044, overlap 1327037 1327034 TAAGATTATAAAAAA CGCT TTTTCT AGCG TTTTTTAAATTTTGT TERM 1210 1327044 - 1327057 + T 74 -3.8 -5.28315 | opp_overlap 1327044 1327037 1327034, overlap 1327037 1327035 TAAGATTATAAAAAA CGCT TTTTCT AGCG TTTTTTAAATTTTGT Hac_1525 1328844 - 1327075 - | hypothetical protein TERM 1211 1328493 - 1328481 - G 75 -7.7 -4.11295 | CTAAAGGGATATAAA TACCG GTG CGGTA ACTGTAAAAAGAATC TERM 1212 1328533 - 1328550 + g 73 -7.1 -4.11773 | GATCTTAAGGTAGTA TTGCAAA TCTT TTTGCAA TTTTAAAGCCTGTTT prfA 1330013 - 1328955 - | peptide chain release factor 1 TERM 1213 1329901 - 1329914 + g 72 -2.4 -5.2422 | GAGCTTTGCTCTTTG CTCA ATTCAG TGAG TTTTTTAATATCATT rpsT 1330401 - 1330132 - | 30S ribosomal protein S20 TERM 1214 1330547 - 1330531 - g 85 -12.3 -2.65815 | opp_overlap 1330530 1330529 1330529 GTGAGAGGTAGAGCA GGGGTGA AAC TCACCCC CATGTTTGTGATGCG TERM 1215 1331655 - 1331640 - g 83 -5.4 -5.50499 | GGATATTCAAAAAAA GCTTCC TTTA GAAAGC TTGAAAGGTTATAGC mrsA 1330492 - 1331829 + | phosphoglucosamine mutase lspA 1331823 - 1332296 + | lipoprotein signal peptidase TERM 1216 1333124 - 1333112 - g 71 -3.4 -5.03994 | overlap 1333106 TTTGACAGAGAAAAA GCTT TCGGT AAGC GATTAGATATTGCGA ureA 1332632 - 1333348 + | bifunctional urease subunit gamma/beta ureC 1333352 - 1335061 + | urease subunit alpha TERM 1217 1335075 - 1335112 + F 73 -7.9 -3.61328 | gap 1, opp_overlap 1335080 1335083, overlap 1335080 AGGATTTTTAATTTT CTAAAGATTTTTGGGAGC ATC GCTCCTTAAAGTC-TTAG TTTGAAAATCTTAAT TERM 1218 1335080 - 1335108 + F 78 -8.9 -3.52472 | opp_overlap 1335080 1335083, overlap 1335075 TTTTAATTTTCTAAA GATTTTTGGGAGC ATC GCTCCTTAAAGTC TTAGTTTGAAAATCT TERM 1219 1335128 - 1335168 + F 95 -4.2 -6.17669 | gap 1, overlap 1335131 TTTGAAAATCTTAAT TTGGCTCTTTGACTTTTTG TTTT CAAAAAGTTA-GGAGCTTA TTTTTTTGTTTTATT TERM 1220 1335131 - 1335165 + F 91 -8.1 -5.04908 | gap 1, overlap 1335128 GAAAATCTTAATTTG GCTCTTTGACTTTTTG TTTT CAAAAAGTTA-GGAGC TTATTTTTTTGTTTT ureI 1335285 - 1335872 + | urease accessory protein ureE 1335874 - 1336386 + | urease accessory protein UreE ureF 1336411 - 1337160 + | hypothetical protein TERM 1221 1337237 - 1337225 - g 70 -9.1 -3.14132 | opp_overlap 1337224 1337225 GTGGTCCTGTAGGAA GCGGT AAA ACCGC CTTGATTGAAGCCTT ureG 1337191 - 1337790 + | urease accessory protein UreG ureH 1337790 - 1338581 + | urease accessory protein UreD TERM 1222 1338604 - 1338566 - T 100 -14.2 -4.19817 | opp_overlap 1338576, overlap 1338576 TTTAGTCACGCAAAA GATTCAAAAAGACTAAAA CCC TTTTAGTCTTTTTGATCC CCCTTTTTTTTTCAC TERM 1223 1338576 - 1338594 + T 90 -9 -4.73388 | opp_overlap 1338566 1338576 CAAAAGATTCAAAAA GACTAAAA CCC TTTTAGTC TTTTTGATCCCCCTT TERM 1224 1338594 - 1338576 - T 93 -9 -4.80396 | opp_overlap 1338576, overlap 1338566 CAAAAGATTCAAAAA GACTAAAA CCC TTTTAGTC TTTTTGATCCCCCTT fragment 1338900 - 1338616 - | - hypothetical protein fragment 1339100 - 1338804 - | - hypothetical protein fragment 1339602 - 1339207 - | COG1674D hypothetical protein fragment 1339924 - 1339718 - | COG1674D hypothetical protein fragment 1340233 - 1340039 - | - hypothetical protein TERM 1225 1340993 - 1341018 + G 74 -4.9 -4.87803 | opp_overlap 1340989, overlap 1340994 AAACCAATTGATTGG ATTTTTCATTT TGAA AAATGAAAAAC TTTTATTTAACGATC TERM 1226 1340994 - 1341017 + G 71 -8.4 -3.51958 | opp_overlap 1340989, overlap 1340993 AACCAATTGATTGGA TTTTTCATTT TGAA AAATGAAAAA CTTTTATTTAACGAT TERM 1227 1341144 - 1341154 + G 72 -5.4 -4.57569 | AGCATTAAAGAAGTG TGCA TGT TGCA TTTTTGGGGCGATAA TERM 1228 1341458 - 1341448 - g 83 -5.4 -5.40072 | opp_overlap 1341443 1341448 1341456, overlap 1341456 GGTTGGTTAAAAAAA TGCT AAA AGCA TTTTCTATGATCTAA TERM 1229 1341448 - 1341458 + G 72 -5.4 -4.5954 | opp_overlap 1341448 1341456, overlap 1341443 1341456 GGTTGGTTAAAAAAA TGCT AAA AGCA TTTTCTATGATCTAA rfaJ 1340256 - 1341473 + | lipopolysaccharide biosynthesis protein TERM 1230 1341500 - 1341484 - T 90 -10.9 -3.8823 | opp_overlap 1341456 1341482, overlap 1341456 1341482 TCTAATCATAAAAGA GCTTGCT TAA AGCAAGC GGTAGCTTTAAAAAA Hac_1546 1341791 - 1341474 - | hypothetical protein fragment 1341906 - 1341775 - | - hypothetical protein fragment 1342173 - 1341910 - | - hypothetical protein fragment 1342288 - 1342163 - | - hypothetical protein TERM 1231 1342378 - 1342401 + r 88 -6.6 -5.20534 | opp_overlap 1342379 1342384, overlap 1342379 CACCTTAGGTGAATT ACCCAACCGC TAAA GCGATTGGGC TTTTTCTTGCTTCAT TERM 1232 1342379 - 1342400 + r 86 -10.1 -3.70694 | opp_overlap 1342379 1342384, overlap 1342378 ACCTTAGGTGAATTA CCCAACCGC TAAA GCGATTGGG CTTTTTCTTGCTTCA TERM 1233 1342400 - 1342379 - R 89 -12.3 -2.73483 | opp_overlap 1342379 1342378, overlap 1342384 ACCTTAGGTGAATTA CCCAACCGC TAAA GCGATTGGG CTTTTTCTTGCTTCA ISHa1675 1343670 - 1342387 - | COG0675L ISHa1675 transposase B ISHa1675 1343828 - 1343941 + | COG1943L ISHa1675 transposase A N-terminal fragment fragment 1344323 - 1344180 - | - hypothetical protein TERM 1234 1344233 - 1344259 + g 83 -10.8 -3.39856 | CACTTATTTTAATGC CTCCACCCCC ATAACTA GGGGGTGGCG TTGGTTGGATCTCTG fragment 1344563 - 1344357 - | - hypothetical protein TERM 1235 1344541 - 1344530 - G 84 -2.2 -5.72622 | TGCATAAAGAAAAAA CCTC GTGC AAGG AATTATGATCATGCA TERM 1236 1344637 - 1344611 - R 70 -8.2 -3.06341 | overlap 1344610 AACACTCTTCAAAAT CCTTTAAAAAAA ACG CTCTTTTAAAGG CACAAAACCTTCAGT fragment 1344739 - 1344614 - | - hypothetical protein Hac_1555 1344891 - 1344736 - | hypothetical protein TERM 1237 1344988 - 1344998 + r 70 -4 -5.02476 | TAATTGATTGTTGGT GTTT TCT AAAC TTTTTTGGGCACTCT TERM 1238 1345623 - 1345601 - R 70 -6.2 -4.1552 | overlap 1345603 TAGTGCCGCAACAAA CACCTAACGC ATG GCGTTTGGTT AGAATGGGTTAAAAA TERM 1239 1345621 - 1345603 - R 77 -8.8 -3.6761 | overlap 1345601 GTGCCGCAACAAACA CCTAACGC ATG GCGTTTGG TTAGAATGGGTTAAA TERM 1240 1345684 - 1345698 + r 82 -10 -3.34787 | opp_overlap 1345684 1345683 1345682 1345692 AAAAAAGAGAAAACC CCCTAG AAC CTAGGG TTATAGGCTAGTATT TERM 1241 1345698 - 1345684 - R 77 -10 -2.74275 | opp_overlap 1345684, overlap 1345683 1345682 1345692 AAAAAAGAGAAAACC CCCTAG AAC CTAGGG TTATAGGCTAGTATT Hac_1556 1345920 - 1345699 - | hypothetical protein putA 1346235 - 1349792 + | proline/pyrroline dehydrogenase TERM 1242 1350506 - 1350516 + G 71 -4 -5.0133 | AGAGAAATCAAGCCT GAAA ACC TTTC TTTTTTACAAGGCTC putP 1349819 - 1351315 + | sodium/proline symporter TERM 1243 1352115 - 1352140 + G 74 -4.9 -4.87803 | opp_overlap 1352111, overlap 1352116 AAACCAATTGATTGG ATTTTTCATTT TGAA AAATGAAAAAC TTTTATTTAACGATC TERM 1244 1352116 - 1352139 + G 71 -8.4 -3.51958 | opp_overlap 1352111, overlap 1352115 AACCAATTGATTGGA TTTTTCATTT TGAA AAATGAAAAA CTTTTATTTAACGAT TERM 1245 1352266 - 1352276 + G 72 -5.4 -4.57569 | AGCATTAAAGAAGTG TGCA TGT TGCA TTTTTGGGGCGATAA TERM 1246 1352580 - 1352570 - g 83 -5.4 -5.40072 | opp_overlap 1352570 1352565 1352578, overlap 1352578 GGTTGGTTAAAAAAA TGCT AAA AGCA TTTTCTATGATCTAA TERM 1247 1352570 - 1352580 + G 72 -5.4 -4.5954 | opp_overlap 1352570 1352578, overlap 1352565 1352578 GGTTGGTTAAAAAAA TGCT AAA AGCA TTTTCTATGATCTAA rfaJ 1351378 - 1352595 + | putative lipopolysaccharide biosynthesis protein TERM 1248 1352622 - 1352606 - T 90 -10.9 -3.8823 | opp_overlap 1352578 1352604, overlap 1352578 1352604 TCTAATCATAAAAGA GCTTGCT TAA AGCAAGC GGTAGCTTTAAAAAA mrp 1353758 - 1352652 - | mrp related protein, putative ATP/GTP-binding protein TERM 1249 1352960 - 1352987 + g 70 -2.8 -5.04385 | gap 1 AATTCCCCATATTTT CTACA-ATGCCTG CAA TAGGAATGTGTAG TTTTTTAAACATATC TERM 1250 1354680 - 1354670 - g 71 -4 -4.87291 | GACTCTAATGAAAAA TTTG CAC CAAA AATTGAAGTTTTACA TERM 1251 1355217 - 1355207 - g 100 -4 -6.28631 | GAAATCAAAAAAAAA TTTG AAG CAAA CAAGGAAAAATTCAA fragment 1353896 - 1356088 + | - hypothetical protein TERM 1252 1356790 - 1356776 - g 73 -2.9 -5.27923 | opp_overlap 1356782 CAATGCGATAAAAAA TTCAA GCAAA TTGAA GATTTGTTCAGTGAA fragment 1356101 - 1356991 + | COG1131V hypothetical protein Hac_1564 1357031 - 1357414 + | hypothetical protein asd 1358461 - 1357421 - | hypothetical protein hisS 1359776 - 1358448 - | histidyl-tRNA synthetase TERM 1253 1358514 - 1358529 + g 76 -4.7 -5.09426 | overlap 1358512 CAAACAATTCAGTTG CATGC CTGAAT GCATG TTTTTTAAGCTTAAA TERM 1254 1358681 - 1358691 + g 73 -8.2 -3.64703 | opp_overlap 1358680 TTTGTCTTAAAGACT CCGC CAA GCGG TTTGCATAAGAAAAA rfaF 1359838 - 1360887 + | ADP-heptose--LPS heptosyltransferase II TERM 1255 1361016 - 1360994 - T 78 -9.2 -3.54935 | opp_overlap 1360988, overlap 1360998 TAAAGTGGGTTTAAA GAAAGCGTTT TTT AAACGCTCCC CTTAGATTTAAAGCC TERM 1256 1361012 - 1360998 - T 88 -8.6 -4.41348 | opp_overlap 1360988, overlap 1360994 GTGGGTTTAAAGAAA GCGTTT TTT AAACGC TCCCCTTAGATTTAA Hac_1568 1361359 - 1361033 - | hypothetical protein tas1 1361600 - 1361971 + | - COG0667C aldo-keto reductase fragment 1 tas1 1362052 - 1362249 + | - COG0667C aldo-keto reductase fragment 2 TERM 1257 1362521 - 1362507 - g 90 -4.3 -5.81412 | TGGAGTCAAAAAAAA TTGGA GTTTT TCCAA AAAATTGGCCGCAAT tas1 1362246 - 1362563 + | - COG0667C aldo-keto reductase fragment 3 TERM 1258 1363020 - 1362991 - T 72 -5.7 -4.46669 | opp_overlap 1362991, overlap 1363012 ATTAAAATGAAGAAA GACTCATTAAGGG ATAA CCCATAAAAAGTC TTTTTAAATTCAAAG fusA 1365165 - 1363087 - | elongation factor G rpsG 1365644 - 1365177 - | 30S ribosomal protein S7 rpsL 1366049 - 1365657 - | 30S ribosomal protein S12 TERM 1259 1366040 - 1366051 + g 70 -3 -5.01845 | TAATCAATTGATTGA TAGT AGGC ACTA TTTTTCCTTATTCTA TERM 1260 1366160 - 1366174 + r 73 -4.3 -5.01823 | TAGGGCTATCTTCAA TCGTT CTTAA AACGA TTTTCTTATTCTTGT rpoB 1374809 - 1366137 - | DNA-directed RNA polymerase subunit beta/beta' TERM 1261 1368335 - 1368346 + g 81 -7.2 -4.74132 | opp_overlap 1368334 TTCTTGTCAAATACC CCGC ATTG GCGG TTTTTAGTGCCGTAT TERM 1262 1370573 - 1370584 + g 75 -4.4 -5.02074 | TAACTTCCCCATAGC TCCA CGAA TGGA TTTTTTCAGGGCTGG TERM 1263 1371909 - 1371920 + g 72 -2.2 -5.31855 | GTCAAAATGCTCCAT GTCA AGCT TGGC TTTTTCTTCTTCATA TERM 1264 1373628 - 1373612 - G 74 -5.1 -4.86731 | opp_overlap 1373615 CTGGGTCAAAGAAAA GCTGTTT GAC AAACTGC TTCGCCACTTCAGTG TERM 1265 1373952 - 1373964 + g 79 -6.3 -4.89521 | opp_overlap 1373923 1373921 1373920, overlap 1373941 CATAGGGTATTCCAC CCATT CTA AATGG TTTTCTTTAAGCTCT rplL 1375410 - 1375033 - | 50S ribosomal protein L7/L12 rplJ 1375938 - 1375456 - | 50S ribosomal protein L10 rplA 1376751 - 1376047 - | 50S ribosomal protein L1 TERM 1266 1376229 - 1376245 + g 74 -5.1 -4.89393 | TCACCTTCCCAATAG GGGCA TGGATAT TGCCC TTTTTATCCACTTTG TERM 1267 1376331 - 1376346 + g 70 -7.6 -3.55563 | CGGTTCCGGTTTTAG GGTTTG GCAT CAAACC TTTAGGACCTAAAAT rplK 1377225 - 1376800 - | 50S ribosomal protein L11 nusG 1377769 - 1377242 - | transcription antitermination protein NusG TERM 1268 1377585 - 1377621 + g 82 -5.1 -5.40474 | opp_overlap 1377595, overlap 1377586 1377589 TTAATAAAAACATAC CCAGGATAAAGGCTACG CTC CGTTACCTTTGTCTTGC TTTTTTTAGAAACCT TERM 1269 1377586 - 1377620 + g 76 -8.6 -3.83561 | opp_overlap 1377595, overlap 1377585 1377589 TAATAAAAACATACC CAGGATAAAGGCTACG CTC CGTTACCTTTGTCTTG CTTTTTTTAGAAACC TERM 1270 1377589 - 1377617 + g 71 -6.7 -4.03885 | opp_overlap 1377595, overlap 1377586 1377585 TAAAAACATACCCAG GATAAAGGCTACG CTC CGTTACCTTTGTC TTGCTTTTTTTAGAA secE 1377979 - 1377800 - | preprotein translocase subunit SecE rpmG 1378381 - 1378223 - | 50S ribosomal protein L33 tuf 1379617 - 1378418 - | elongation factor Tu TERM 1271 1379785 - 1379801 + H 74 -9.5 -2.62983 | opp_overlap 1379797 TTGAACCGCCGACCT CTTCCTT ACC AAGGAAG TGCTCTACCCCTGAG hetA 1380333 - 1382069 + | ATP-binding protein of ABC transporter Hac_1588 1382744 - 1382076 - | hypothetical protein atpE 1383576 - 1383259 - | F0F1 ATP synthase subunit C pnp 1385774 - 1383708 - | polynucleotide phosphorylase/polyadenylase Hac_1592 1386481 - 1385777 - | hypothetical protein ostA 1388757 - 1386496 - | organic solvent tolerance protein TERM 1272 1388327 - 1388341 + g 70 -2.8 -5.1417 | opp_overlap 1388310, overlap 1388329 GTATCAATACTACAC CCTGAA GCG TTCATG TTTTTGATTTTATAA Hac_1594 1389239 - 1388760 - | hypothetical protein TERM 1273 1388905 - 1388893 - G 70 -9.1 -3.17146 | overlap 1388889 1388891 CGCTTGCATAACATA GCCCT GCT AGGGC AATCCGCTAAATAAA TERM 1274 1389273 - 1389250 - R 71 -5.4 -4.68908 | opp_overlap 1389265, overlap 1389253 CGCATTCAAAACAAA CAAGACAAAT TTCC ATTTGTCTCA AACTTTTAAGAATAT TERM 1275 1389270 - 1389253 - R 79 -7.1 -4.44301 | opp_overlap 1389265, overlap 1389250 ATTCAAAACAAACAA GACAAAT TTCC ATTTGTC TCAAACTTTTAAGAA purD 1390553 - 1389279 - | glycinamide ribonucleotide synthetase TERM 1276 1389879 - 1389864 - G 75 -3.2 -5.34309 | ATGATCAAAGAAAAA GTTTGC AGGA GCGAAC GCCCCCATGCCACTA yhcG 1391515 - 1390829 - | ABC transporter ATP-binding protein uppS 1392180 - 1391509 - | undecaprenyl pyrophosphate synthetase TERM 1277 1392224 - 1392244 + r 74 -8.5 -3.32294 | TCCAATGCCTTTACC TTTTAAAGA AAA TCTTTAAAA TTATACACCATTTAA dld 1395096 - 1392256 - | D-lactate dehydrogenase TERM 1278 1392963 - 1392974 + g 84 -5.8 -5.20781 | AAATGACTTTTTCTC CGCT CTTA AGCG TTTTATTTTCTAATG TERM 1279 1393139 - 1393127 - G 75 -3.3 -5.27335 | opp_overlap 1393127 CTTTTTAAAGAAAAA CGAGC CGT GCTTG TGGTTGTTTGCATGT TERM 1280 1393584 - 1393602 + g 73 -4.6 -4.8543 | ACAACGCTTTGATTT GCTTATGG ATT TTATAAGC TTTTTCTCCCCATTC TERM 1281 1393656 - 1393679 + g 73 -6.8 -4.2679 | gap 1 TCCTGCCTGTGCCAT GTTC-GGCTTT AAT AGAGCCAGAAC TTTTGCTCACCATTA Hac_1599 1395168 - 1395506 + | hypothetical protein hemD 1395521 - 1396183 + | uroporphyrinogen-III synthase crcB3 1396230 - 1396613 + | hypothetical protein Hac 1396754 - 1396894 + | Hac_1602 - - hypothetical protein TERM 1282 1396993 - 1396975 - f 74 -3.2 -5.4251 | GCGAGACAGAAAAAA GCTTTA GCGCGCT TAAAGC CATCACGCAAGCGGT Hac 1397007 - 1397255 + | Hac_1604 - - hypothetical protein TERM 1283 1398324 - 1398300 - g 70 -7.9 -3.5525 | opp_overlap 1398290 1398300, overlap 1398290 AGAGAGCTTTTGAAA GCTTTAGATCT CAA AGACCGAAAGC TTTATACCACAAGGC Hac 1397361 - 1398497 + | Hac_1606 - COG0582L bacteriophage-related integrase Hac 1398497 - 1398673 + | Hac_1607 - - hypothetical protein TERM 1284 1398969 - 1398954 - g 100 -3.2 -6.47325 | overlap 1398955 1398956 AAAAAAGAAAAAAAA CCGACG AACG CGTCAA AACCCACAATAAAAC Hac 1398675 - 1399004 + | Hac_1608 - COG0640K hypothetical protein TERM 1285 1399469 - 1399448 - g 75 -4.4 -5.11254 | AAGAATAAAAATAAA CATGCACA TATACG CGCGCATG AGGAATTTTCACACT Hac 1399001 - 1399948 + | Hac_1609 - - hypothetical protein Hac 1400146 - 1400415 + | Hac_1610 - - hypothetical protein TERM 1286 1400617 - 1400604 - g 71 -6.7 -4.10855 | AAAACTCGGCGAAAA GGCTT TTGA AAGCC AAGCCTTTCAAGAAA TERM 1287 1400720 - 1400706 - g 75 -4.2 -5.1287 | TTTATATTTAAAAAA GCAAGA AAG CCTCGC TAAAGAACTTTTAGA TERM 1288 1401080 - 1401053 - g 91 -12.9 -2.93723 | opp_overlap 1401059, overlap 1401048 1401059 GCGTGAGGAAGCACA TGGAAACCTTG AAAAAG CAAGGTTTCCA AATCCATGGCAGAAA TERM 1289 1401143 - 1401125 - g 75 -8.2 -3.82499 | ATCAAAGCTACGAAA TGAACGAT CTC ATCGCTCA AATCCGCTCTCTTAC Hac 1400422 - 1401573 + | Hac_1611 - COG0305L,COG0467T hypothetical protein TERM 1290 1401913 - 1401901 - g 74 -9.1 -3.54676 | opp_overlap 1401901 1401902 1401911 1401912, overlap 1401887 1401897 1401910 1401911 ACCGAGCGAAACGAA CGGCT TAA AGCCG TTTTAGCCTATGCTA TERM 1291 1401901 - 1401913 + G 79 -9.1 -4.17657 | opp_overlap 1401887 1401901 1401897 1401910 1401911, overlap 1401902 1401911 1401912 ACCGAGCGAAACGAA CGGCT TAA AGCCG TTTTAGCCTATGCTA TERM 1292 1402255 - 1402270 + G 77 -6 -4.7497 | opp_overlap 1402248 CCCAAATACTTGCAC GGCAGG GAAA CCAGCC TTTTTAATAAATCGG Hac 1401586 - 1403157 + | Hac_1612 - COG0358L DNA primase DNA G TERM 1293 1403217 - 1403207 - f 87 -5.4 -5.52384 | CTTGCATGAAAAAAA CATG AAA CATG CAAGGATGAAACCTC TERM 1294 1403580 - 1403546 - g 89 -13 -2.54387 | opp_overlap 1403551 1403552, overlap 1403551 1403552 GAAATTCTTAAGCGA TGAAACCCCTAACACG CTG CGCTTTAGGGATTTCA ATAACCTTTTTGCGT TERM 1295 1403575 - 1403551 - g 70 -7.1 -3.794 | opp_overlap 1403551 1403552, overlap 1403546 1403552 TCTTAAGCGATGAAA CCCCTAACACG CTG CGCTTTAGGGA TTTCAATAACCTTTT TERM 1296 1403622 - 1403612 - g 71 -4.6 -4.71426 | overlap 1403613 TTTGGATCAACAAAA CCGC CCC GCGA ACGAAAGGCTAAAGC Hac 1403391 - 1404983 + | Hac_1614 - - hypothetical protein TERM 1297 1407201 - 1407179 - g 76 -10.6 -2.78547 | opp_overlap 1407179 1407178 1407183, overlap 1407183 GGATTTGAGCAATTA CCAAGCCCTG ACT CAAGGCTTGA ATTTAGAAGACAAAC TERM 1298 1408625 - 1408611 - g 73 -4.3 -4.86621 | overlap 1408615 AGGCTCAATGAAAAA GAGAT TTACG ATCTC AACTACGCGATCGTG TERM 1299 1408775 - 1408803 + G 71 -9.6 -2.70932 | opp_overlap 1408775 CGGAGGGTTTGAAGA CTTGCCCATCAT CTTGC ATGACGGGCAGG TGATTGCAGGCAACC TERM 1300 1408803 - 1408775 - g 73 -9.6 -3.02511 | opp_overlap 1408775 CGGAGGGTTTGAAGA CTTGCCCATCAT CTTGC ATGACGGGCAGG TGATTGCAGGCAACC Hac 1405053 - 1410272 + | Hac_1615 - - mosaic CUP0956/HP1116/jhp1044-like protein Hac 1410338 - 1411588 + | Hac_1616 - - hypothetical protein TERM 1301 1412028 - 1412041 + G 71 -6.7 -4.09685 | opp_overlap 1412027 1412021 1412028 1412040, overlap 1412040 AGAACAGATTGAAAC GCTCT TGCA AGAGC TTTTAAAGCATAAGC TERM 1302 1412040 - 1412069 + G 71 -4.3 -4.82901 | opp_overlap 1412028 1412027 1412021 1412040 1412049, overlap 1412028 1412044 1412049 AACGCTCTTGCAAGA GCTTTTAAAGCAT AAGC ATGCTTTGATCGC TTTTTATGAGGCGCA Hac 1411585 - 1412157 + | Hac_1617 - - hypothetical protein Hac 1412167 - 1412562 + | Hac_1618 - COG0481M hypothetical protein Hac 1412559 - 1413146 + | Hac_1619 - - hypothetical protein TERM 1303 1413180 - 1413153 - f 77 -4.2 -5.40474 | opp_overlap 1413153 AGGGTGTGAAAAAAA CCTCTTGAGA AAGGAGAG TATCAAGAGG TTTAAGAGTTTTAGA TERM 1304 1413323 - 1413297 - f 76 -5.2 -5.06223 | AGAAAGGAAACAAAA GGGGTATTTTTT CAA AAAAACTAACCC TTAAAATCCTTTTTG TERM 1305 1413597 - 1413581 - g 71 -3.7 -4.9792 | TATCTGAGAGAAAAA CTCAC GGACAAG GTGAG CAGAGCGATGGATTT TERM 1306 1413876 - 1413854 - g 81 -9.2 -3.89182 | overlap 1413867 GAAGAAGAAGCTAAA TTGCCTAAAG AAG CGTTAGGCAA CGGCGTGAGCGGCGT Hac 1413383 - 1413931 + | Hac_1620 - - hypothetical protein TERM 1307 1415018 - 1415031 + G 70 -8.1 -3.31144 | TATCAGAGCGTGGAT GGCGT CAGC ACGCC TTATGACAATCAGGA Hac 1413941 - 1415083 + | Hac_1621 - - hypothetical protein Hac 1415098 - 1415457 + | Hac_1622 - - hypothetical protein Hac 1415467 - 1415898 + | Hac_1623 - - hypothetical protein TERM 1308 1416447 - 1416435 - g 72 -7.7 -3.8211 | TTCCACTGACAAGAA TGCGT TAG ACGCA AGGCGTTTCCATAAG TERM 1309 1417504 - 1417489 - g 71 -4.6 -4.82901 | opp_overlap 1417477 GCCGCGCGAGAAAAA GCGCCT TATA ACGCGC AAATAGAAGCCTTGC TERM 1310 1417560 - 1417513 - g 95 -12.9 -3.82603 | AACGCGCAAATAGAA GCCTTGCAAATCCAAAAACTC CAAGCC GAGATTTTGGAATTGCAAGCC AAAGCGCACAAATAC Hac 1415965 - 1417767 + | Hac_1624 - - mosaic CUP1551/CUP0957-like protein TERM 1311 1419240 - 1419269 + G 71 -9.2 -2.71712 | opp_overlap 1419229, overlap 1419239 TAGACGCTTTAGCGA GCGCGATCACGC ATGAGA GCGTGAAAGCGC CTTTGAAACGAGAAG TERM 1312 1419304 - 1419290 - g 88 -6.4 -5.25772 | AAACGAGAAGAAAAA CCCCAT CTA ATGAGG CGCTATCATAAACCG Hac 1417781 - 1419334 + | Hac_1625 - COG5410S phage-related CUP0950-like protein TERM 1313 1419409 - 1419375 - g 74 -9 -3.6318 | AAAGCTTGAAAAAAT TAAAAAAATTAAAAAA AAG CCTTTTAATTTTTTTA AAAATCCACGGTATA Hac 1419337 - 1419516 + | Hac_1626 - - hypothetical protein Hac 1419529 - 1419732 + | Hac_1627 - - hypothetical protein TERM 1314 1419752 - 1419764 + G 70 -6.3 -4.3208 | opp_overlap 1419751 ATGAAAAACAAGATG CAACA CGC TGTTG TTTTGAGTTATGAGA Hac 1419737 - 1420072 + | Hac_1628 - - hypothetical protein Hac 1420069 - 1420290 + | Hac_1629 - - hypothetical protein Hac 1420340 - 1420885 + | Hac_1630 - - hypothetical protein Hac 1420887 - 1421672 + | Hac_1631 - - hypothetical protein TERM 1315 1421699 - 1421714 + G 70 -7.5 -3.58533 | ATTTTGAAAGCATCA GCGCC GGGAGA GGCGC TTTAGAGGGTTATAA TERM 1316 1421777 - 1421754 - g 100 -7.4 -5.68023 | opp_overlap 1421766, overlap 1421756 GGATAACCAAAAAAA CGCGCATGCA GCCT TGCATGCAAG CATGGGAGTTTTTGC TERM 1317 1422080 - 1422099 + G 79 -10 -3.53811 | opp_overlap 1422074 1422091, overlap 1422083 TTTTGAAAACGCTGC CAAGCGTG AAAG CGCGCTTG TTTGACCCGAATGCA Hac 1421677 - 1422219 + | Hac_1632 - - hypothetical protein Hac 1422258 - 1422545 + | Hac_1633 - - hypothetical protein TERM 1318 1422540 - 1422550 + F 95 -5.4 -6.32017 | opp_overlap 1422539 1422540 TTCAAAAAAACTAAC CCTT GAA AAGG TTTTTTTTGTTTGTT Hac 1422604 - 1423488 + | Hac_1634 - - hypothetical protein Hac 1423498 - 1424343 + | Hac_1635 - - hypothetical protein Hac 1424343 - 1425173 + | Hac_1636 - - hypothetical protein pyrA 1426748 - 1425609 - | carbamoyl phosphate synthase small subunit TERM 1319 1426042 - 1426058 + g 93 -3.7 -5.86061 | GGCCCATTAGAGAGG AAAATCC CAT GGATTTC TTTTTTTTCATAAGC Hac_1639 1427299 - 1426748 - | hypothetical protein TERM 1320 1427390 - 1427377 - R 74 -5.3 -4.78848 | opp_overlap 1427360 1427377, overlap 1427360 1427372 TTTTTAAAGATAAAA TGCTT TTTA AAGCA TGGGTTTAATGGCGC Hac_1640 1428640 - 1427396 - | putative integral membrane protein TERM 1321 1428413 - 1428375 - G 75 -3.3 -5.24989 | gap 1, opp_overlap 1428396 TGAGAGAGTAAAAAA GGCAATCTTAACGCCAAA TCGT TTTGAC-CCAAGATTTCC GTGCTTTTTTGAGCG Hac_1641 1429539 - 1428631 - | putative membrane transport protein TERM 1322 1428954 - 1428935 - G 73 -2.8 -5.24129 | CCTGTGGATAAAAAA GGAATGTC AATA AACATGCC CACTAGCCCAAGCAC TERM 1323 1429879 - 1429857 - g 93 -4.8 -5.73339 | AGAACGAGAAAAAAA GGACGCTCTC ATA GAAAACCTCC CCTTTAACCCTAACA Hac_1642 1429735 - 1430196 + | hypothetical protein folP 1431436 - 1430294 - | dihydropteroate synthase TERM 1324 1431230 - 1431219 - G 79 -5.8 -4.91511 | ACCCCATCATAAAAA GGCT CTTT AGCC AAAATACAATCTTTT holB 1432089 - 1431436 - | DNA polymerase III subunit delta' Hac_1645 1432628 - 1432086 - | hypothetical protein lysC 1433842 - 1432625 - | aspartate kinase nudA 1434309 - 1433836 - | dinucleoside polyphosphate hydrolase TERM 1325 1434426 - 1434414 - R 75 -2.7 -5.70522 | AAGAATAAGAAAAAA TAGTT TGA AACCA ATCAAAATAGTGCCA TERM 1326 1434450 - 1434434 - R 79 -7.3 -4.5287 | opp_overlap 1434436 TGAAACCAATCAAAA TAGTGCC AAA AGCACTA TTGAAATCAAGAGAG Hac_1648 1434757 - 1434467 - | cytochrome c-553 TERM 1327 1435356 - 1435346 - g 71 -4 -4.96646 | TTAGATAATGAAAAA TCTT TAA AAGA AGAATTGAAACTCGC TERM 1328 1435831 - 1435848 + G 71 -3.3 -5.1675 | opp_overlap 1435831 1435832 1435833, overlap 1435832 TTTTATTAAAAATAA CCGCTTG GTAG CGAGCGA TTTTTTCATGGCTGA hemN 1434836 - 1435888 + | coproporphyrinogen III oxidase czcA 1439029 - 1435925 - | cation efflux system protein TERM 1329 1436001 - 1435987 - G 88 -6.4 -5.20333 | opp_overlap 1435987 TAGGGATAATAAAAA GCGTTA AAA CAACGC TGCTTATCATACCCC TERM 1330 1436282 - 1436269 - G 79 -8.1 -4.11216 | TCGCTACCCCTAAAA GGGCT AAAA AGCCC ACTAACGTTGCCACG TERM 1331 1438102 - 1438119 + g 85 -2.7 -5.68438 | TCACATCAGGGTTAC TCGCT TGTAAGGT AGCGA TTTTTTCTTTAATGG TERM 1332 1438917 - 1438932 + g 79 -6.8 -4.82901 | opp_overlap 1438917 CTTAAATCCGGCAAA GCGTCC AAAC GGATGC TTTTTATCGCCCACA Hac_1651 1440030 - 1439032 - | cation efflux system protein Hac_1652 1441271 - 1440027 - | hypothetical protein TERM 1333 1440082 - 1440061 - G 79 -8.8 -4.05446 | overlap 1440064 TTTTGTAAGGACAAA TAAGCGCT ATTTAG AGCGCTTA AGGTTTCAAGCTGGG TERM 1334 1440572 - 1440585 + g 72 -5.3 -4.57073 | GGAGCTCTTGCTCAT TGTTG AATT CAACA TTTTTAGGGGCAATG TERM 1335 1441108 - 1441120 + g 80 -2.7 -5.54079 | GCGTCAATTTGCTCT TGCAA AGC TTGTA TTTTTTGATTTTTAG TERM 1336 1441232 - 1441217 - G 85 -10.4 -4.14615 | opp_overlap 1441215 AAAAAGCTCTTAAAA GGCGTG TAAA CACGCC CCCTTTATAGAATAC Hac_1653 1441653 - 1441276 - | hypothetical protein TERM 1337 1442095 - 1442118 + r 100 -11.8 -4.20806 | opp_overlap 1442093 TTACTGGCCAAAGTT CCCTTAAGCT TTCA AGCTTAGGGG TTTCCTTTTCAAGTG fragment 1443245 - 1442172 - | - hypothetical protein TERM 1338 1442507 - 1442493 - GR 80 -7.1 -4.58395 | opp_overlap 1442492 1442493 TTTAGTGCTCAAAAA GAGGG TTTCG CCCTC CTCATTTTTCTTGCC TERM 1339 1442750 - 1442785 + gr 70 -8.3 -3.05384 | overlap 1442753 AAAATTGATCTCTGT CATTCTGCCATGTGT GTTCGA ACACATGGCGGATAG TTAAATACAAAAAAA TERM 1340 1442753 - 1442782 + gr 95 -13 -2.75064 | overlap 1442750 ATTGATCTCTGTCAT TCTGCCATGTGT GTTCGA ACACATGGCGGA TAGTTAAATACAAAA fragment 1444566 - 1443214 - | - hypothetical protein TERM 1341 1443290 - 1443272 - GR 78 -8.9 -3.54459 | TCAACTCTTTGTAAA TGCGCAT GAAAA ATGCGCA TGAAAAATTGGGCGA TERM 1342 1443558 - 1443538 - GR 78 -6.9 -4.42765 | overlap 1443539 GTTTAAAAAATCAAA TTGGAAAAC ATG GTTTTCCAG CAGGTTTAGTTGGTT TERM 1343 1443557 - 1443539 - GR 83 -10.4 -3.24575 | overlap 1443538 TTTAAAAAATCAAAT TGGAAAAC ATG GTTTTCCA GCAGGTTTAGTTGGT TERM 1344 1443731 - 1443746 + gr 81 -5.4 -5.24129 | TGCCCCAAACTCATA GCTAAG CATT CTTGGC TTTTTTCTACCCAAA purU 1445556 - 1444675 - | formyltetrahydrofolate deformylase pspA 1446436 - 1445558 - | protease IV TERM 1345 1445635 - 1445646 + g 76 -3.6 -5.24531 | opp_overlap 1445635 CTTTTTCAATAAAAC GCTC CATA GGGC TTTTTTCTAGCCAAT TERM 1346 1446198 - 1446213 + g 72 -5.4 -4.67556 | opp_overlap 1446198, overlap 1446212 ATCAAAAGCAAAACG CCCTTA ATGC TAGGGG TTTTTAAAATCTTAT Hac_1659 1446506 - 1446745 + | hypothetical protein N-terminal 1446878 - 1447087 + | - hypothetical protein TERM 1347 1447686 - 1447672 - T 72 -2.8 -5.41143 | GATTTGTTAAAAAAA GACTCT CGC AGATTC AATCACCTATATATT ftsI, 1449647 - 1447806 - | COG0768M cell division protein FtsI/penicillin-binding protein fliE 1450134 - 1449805 - | flagellar hook-basal body protein FliE TERM 1348 1449861 - 1449881 + g 73 -8.3 -3.61268 | overlap 1449859 1449864 CTTTGTTACGCACCT CAAGCATGA GCT TCATGCTCG TTTCAGCCTTCCCTA flgC 1450727 - 1450242 - | flagellar basal body rod protein FlgC flgB 1451163 - 1450741 - | flagellar basal body rod protein FlgB TERM 1349 1451470 - 1451481 + G 84 -4.4 -5.60993 | AGTGTTGTATCACTA TGGA GAAT TCCA TTTTTTTATACGCCA TERM 1350 1452463 - 1452477 + G 74 -8.6 -3.49475 | AAGCTATGGAGGGAG TTCGCT TTT AGCGAA TTGTATCGCCATAGG ftsW 1451423 - 1452529 + | cell division protein ftsW TERM 1351 1452523 - 1452542 + T 82 -6.5 -5.055 | opp_overlap 1452523 AGCGCGATACACCAA GAGCTAA AAAATA TTAGCTC TTTTTTAAAAATTAA ceuE 1453549 - 1452554 - | iron(III) ABC transporter, periplasmic iron-binding protein TERM 1352 1453899 - 1453914 + G 72 -4.8 -4.75518 | GTGGTGCGATCCTTT TCTTTT GGCC AAAAGA TTTTACTTTTGTGTG ahpC 1453784 - 1454380 + | alkyl hydroperoxide reductase TERM 1353 1454393 - 1454427 + F 76 -8.8 -3.4503 | opp_overlap 1454402 TAATAACTTAACTCT TTTAGCCAAGAAGAAT TTT ATTGTTCTTGGTTGAA TCCTTTTCTTTTTAT Hac_1671 1454520 - 1455326 + | putative ABC transport system substrate-binding protein TERM 1354 1455356 - 1455389 + T 71 -5.3 -4.57516 | opp_overlap 1455357, overlap 1455343 1455349 1455357 ACCCATCTTTAAGGC AGGTGGTGTTTGTTG GGCT CAACAAAAAGCACCG TTTTAATTTGACTAT TERM 1355 1455357 - 1455388 + T 74 -8.8 -3.33425 | opp_overlap 1455357, overlap 1455343 1455356 1455349 CCCATCTTTAAGGCA GGTGGTGTTTGTTG GGCT CAACAAAAAGCACC GTTTTAATTTGACTA TERM 1356 1455427 - 1455412 - T 75 -4.7 -5.00895 | TTGACTATATAAAAA GCTTG CAACCT CAAGC GATAGAAATGTTAAA pbp2 1457180 - 1455438 - | penicillin-binding protein TERM 1357 1455908 - 1455898 - G 73 -4.6 -5.00616 | GGCGTGGTTAAAAAA GAGC CTT GCCC AATAGCGGTAATGAG TERM 1358 1457054 - 1457066 + g 73 -2.7 -5.2112 | TATCGCCCCTTGTAG GGATT AGA AATTC TTTTTTGGTCATGTT Hac_1673 1457628 - 1457185 - | hypothetical protein TERM 1359 1457245 - 1457220 - G 72 -6.1 -4.4195 | ACAGACCCCACAAAA CGCCCTCTATG AGCA CAAAAAGAGCG AGAAAACCTATCGTT TERM 1360 1457529 - 1457518 - G 85 -5.8 -5.40014 | AAATAAGAATAAAAA CCCA AGCA TGGG GGGTAAAAAAGGCAT Hac_1674 1458266 - 1457640 - | GTPase EngB Hac_1675 1458820 - 1458263 - | hypothetical protein Hac_1676 1459413 - 1458820 - | hypothetical protein TERM 1361 1459191 - 1459180 - GR 74 -3 -5.32944 | TTTAGAATCAAAAAA GATT TCAT AATC ATCGTATTGCAAGGC Hac_1677 1459882 - 1459388 - | hypothetical protein rlpA 1460826 - 1459879 - | rare lipoprotein A dniR 1461932 - 1460826 - | regulatory protein DniR Hac_1680 1462788 - 1462024 - | hypothetical protein TERM 1362 1462441 - 1462451 + g 70 -2.6 -5.1502 | AGAAAATTCAATTTG TTTT GTA AAAA TTTCTTTTTGTTTGT TERM 1363 1463201 - 1463218 + G 76 -5.5 -4.90002 | TGGATTTTTTTATCA GCGCTTC TAAA GAAACGC TTTTATTGTGTGTTG ribC 1462861 - 1463481 + | riboflavin synthase subunit alpha TERM 1364 1463541 - 1463522 - g 75 -9.3 -3.23393 | overlap 1463520 CTCTAGCTTATAACA TGGGGCA AGATCA TGCCCCA AAAGTGATCGCAAGT Hac_1682 1463482 - 1463754 + | putative flagellar biosynthesis protein abc 1463769 - 1464752 + | ABC transport system, ATP-binding protein TERM 1365 1464780 - 1464815 + G 70 -2.5 -5.17054 | opp_overlap 1464782, overlap 1464782 AATGCTAATTCAAGC CACGCTAGAAACGCT TTATAT GGTGTTTGTGGCGAG TTTTTTGGCTGTTGT yaeE 1464754 - 1465401 + | ABC transport system, permease protein Hac_1686 1465765 - 1467342 + | lipid A phosphoethanolamine transferase Hac_1687 1467348 - 1467920 + | lipid A 1-phosphatase nspC 1469144 - 1467927 - | carboxynorspermidine decarboxylase TERM 1366 1468201 - 1468222 + g 73 -7.3 -4.12188 | opp_overlap 1468200 TCAACTTCAATAAGC TCTCCATCG TTTT CTATGGAGA TTTTAAGAATGCTAG cheV 1470106 - 1469141 - | chemotaxis signal transduction protein CheV Hac_1690 1471639 - 1470206 - | hypothetical protein TERM 1367 1470395 - 1470380 - G 71 -4.6 -4.81644 | opp_overlap 1470392 TAAAGAAAACGAAAA CGCCTC GGTG GAGTCG GCTTTGACTTTATAA TERM 1368 1470563 - 1470546 - G 73 -7.1 -4.1023 | AACCCTAAATAATAA TTTGCAA TCGC TTGCAAA CCCACCTTAAGAGTG virB4 1474190 - 1471827 - | type IV secretory pathway component VirB4 TERM 1369 1472349 - 1472364 + g 79 -7.6 -4.24963 | opp_overlap 1472340 1472338 1472349 1472348, overlap 1472342 ATAATAGGCTAAAAG CCCTAA ATCT TTAGGG TTTTGAGTGATTGTG Hac_1692 1474455 - 1474192 - | hypothetical protein TERM 1370 1474295 - 1474270 - G 76 -4.7 -5.14965 | ATCTTCATCAAAAAA TTCTAGCACGC TAAA GAGCGCTAAAA ACCCCAAATACAATA Hac_1693 1474736 - 1474455 - | hypothetical protein Hac_1694 1475696 - 1474869 - | hypothetical protein TERM 1371 1474941 - 1474960 + g 74 -9.4 -3.08073 | opp_overlap 1474941 ATTTTCTTCTAACAA GCTTTGAA TCTT TTCAAAGC TGTATTGCAAGTGGT TERM 1372 1474960 - 1474941 - G 78 -9.4 -3.61517 | opp_overlap 1474941 ATTTTCTTCTAACAA GCTTTGAA TCTT TTCAAAGC TGTATTGCAAGTGGT TERM 1373 1475051 - 1475041 - G 73 -8.2 -3.59984 | GCAAAAGGCATATAA GGGG TAG CCCC AATCGCCACCACGAT TERM 1374 1475726 - 1475714 - R 75 -4.8 -5.03747 | AAACCTCCTAAAAAA CAGC TTAAC GCTG ATTAGAACTTTTTAT trmU 1476839 - 1475787 - | tRNA methyltransferase TERM 1375 1476054 - 1476088 + g 75 -7.8 -4.11216 | opp_overlap 1476054 1476055 1476074, overlap 1476055 CCTTGCCACCACCAA GCGGGCGTTATTGGGT AAG ACAAAATAGCGCCCGA TTTTGACAATCACGC TERM 1376 1476055 - 1476087 + g 80 -11.3 -3.06515 | opp_overlap 1476055 1476054 1476074, overlap 1476054 CTTGCCACCACCAAG CGGGCGTTATTGGGT AAG ACAAAATAGCGCCCG ATTTTGACAATCACG dnaG 1478515 - 1476836 - | DNA primase TERM 1377 1477373 - 1477361 - G 70 -4.9 -4.5528 | overlap 1477356 TAAAAGCAAGGAAAA GTTTT TCA AAAAC CCTAACATTTCTTTA TERM 1378 1478143 - 1478107 - G 70 -8.1 -3.2614 | TACTCTCTATATTAA GCCCTCTTTTTTGCAAA TAA TCTAAAAAAAAGGGGGC GTTAAAAAGCTCTTC TERM 1379 1478964 - 1478976 + G 75 -7.7 -4.09685 | opp_overlap 1478963 AATGCGTTAAAGAGG GCGAT GTG ATCGC TTTTGGCAAATACAA groES 1478795 - 1479151 + | co-chaperonin GroES TERM 1380 1479314 - 1479298 - g 70 -3 -5.08824 | gap 1, overlap 1479302 TGTTGATCCAAAAAA GCTATGG CGCT CCA-AGC ATCACAAAAGATGGC groEL 1479174 - 1480814 + | chaperonin GroEL TERM 1381 1480866 - 1480881 + F 71 -8.2 -3.28592 | opp_overlap 1480865 1480866, overlap 1480866 1480863 TCTCTCTTCTAAAAT CCCCCT TTTT GGGGGG TGCTTTTTACATTAC TERM 1382 1480880 - 1480866 - f 72 -8.5 -3.04398 | opp_overlap 1480866 1480866 1480863, overlap 1480865 TCTCTCTTCTAAAAT CCCCC TTTTT GGGGG GTGCTTTTTACATTA TERM 1383 1481053 - 1481037 - g 73 -2.9 -5.18726 | overlap 1481038 TTTTGATAACAAAAA CGCACTC AAT GATTGCA AAAATCTTATCAATT Hac_1699 1480996 - 1481226 + | hypothetical protein omp31 1481490 - 1481858 + | - - outer membrane protein 31 fragment 1 TERM 1384 1482783 - 1482793 + G 79 -6.8 -4.84359 | GCCAAGTGGATGCGG CGGA TTT TCCG TTTTTATCCAACTCG omp31 1482474 - 1482815 + | - - outer membrane protein 31 fragment 2 omp31 1482773 - 1482883 + | - - outer membrane protein 31 fragment 3 Hac_1707 1483641 - 1483084 - | hypothetical protein Hac_1708 1484366 - 1483875 - | hypothetical protein Hac_1709 1484726 - 1484406 - | hypothetical protein Hac_1711 1484851 - 1485066 + | hypothetical protein parA 1485333 - 1485989 + | chromosome partitioning protein ParA TERM 1385 1486102 - 1486118 + G 78 -9.5 -3.57144 | opp_overlap 1486097 AAAAAGACAGGCTGA GCGATTT AGA AAATCGC TTTGAGAATGCCAAC TERM 1386 1486279 - 1486261 - g 75 -3.1 -5.23292 | opp_overlap 1486261 TTAGAGAAAATAAAA GCGTGTT TGTTC AAGACGC TATTGTTTTTTATTT Hac_1713 1486068 - 1486352 + | hypothetical protein Hac_1714 1486396 - 1487574 + | hypothetical protein Hac_1715 1487922 - 1487599 - | hypothetical protein Hac_1716 1488398 - 1489006 + | metal-dependent hydrolase ilvE 1490038 - 1489016 - | branched-chain amino acid aminotransferase TERM 1387 1489134 - 1489146 + g 72 -6.3 -4.49556 | AAAAAATAAGACTTG TTGTG GTG CACAA TTTCTTTAATAGGCG TERM 1388 1490265 - 1490280 + r 82 -7.6 -4.62561 | TTAATTAAGCTATCA CTTGAC TAGC GTCAAG TTCTTTTGTTTGTTG TERM 1389 1490293 - 1490323 + r 77 -7.8 -4.13945 | opp_overlap 1490303, overlap 1490303 AAGTTCTTTTGTTTG TTGTAAAAAATGCT AAA AGCATTTTTTAAGA TTTTGCGATCAGCAT TERM 1390 1490303 - 1490313 + r 80 -5.4 -5.15117 | opp_overlap 1490303, overlap 1490293 GTTTGTTGTAAAAAA TGCT AAA AGCA TTTTTTAAGATTTTG TERM 1391 1490313 - 1490303 - R 76 -5.4 -5.00616 | opp_overlap 1490293 1490303 GTTTGTTGTAAAAAA TGCT AAA AGCA TTTTTTAAGATTTTG omp32 1491104 - 1490358 - | outer membrane protein 32 TERM 1392 1491216 - 1491205 - R 71 -3 -5.29385 | AACTCAATTAAAAAA CTAA CCTT TTAG ATCATTCCAACGCTT polA 1493868 - 1491205 - | DNA polymerase I TERM 1393 1492743 - 1492727 - G 71 -3.7 -4.87273 | overlap 1492729 AACATTTTAGAAAAA GCGTTTT GCA AAAACTC TAAAGAAAAGGGCGA TERM 1394 1494948 - 1494937 - g 74 -5.8 -4.56314 | opp_overlap 1494936 1494937 CGAAGACAATCAAAA GCGT TTCA ACGC CTTTTTAAAGAATCT Hac_1720 1494176 - 1496500 + | type III restriction-modification system mod 1496494 - 1498422 + | type III restriction-modification system: methyltransferase Hac_1723 1499216 - 1498632 - | motility protein TERM 1395 1499243 - 1499255 + r 72 -3.3 -5.14563 | TTTTTAATGGGTTTT GCTCT TCA AGCGC TTTTTTAATCAAAGA Hac_1724 1499894 - 1499223 - | hypothetical protein TERM 1396 1499351 - 1499364 + g 81 -4.5 -5.45802 | TTTGATTGTTATCTT TGCTC GCAT GGGCA TTTTTGTTTTCCAAA TERM 1397 1499372 - 1499386 + g 70 -7.2 -3.77927 | overlap 1499371 CATGGGCATTTTTGT TTTCCA AAC TGGAAA TATTTTCATGCTTGA TERM 1398 1499509 - 1499499 - G 76 -5.4 -4.89567 | TTCTAAAAGAGAAAA CGAT AAA ATCG TAAAACGCACCGCAT Hac_1725 1500712 - 1499897 - | ABC transport system substrate-binding protein Hac_1726 1501482 - 1500697 - | putative ABC transport system ATP-binding protein TERM 1399 1501099 - 1501120 + g 90 -4.5 -5.78622 | opp_overlap 1501099 CACTTTTTCAATCCA CATTTTAGA AATT TCTACAATG TTTTTTTTAGAATAA Hac_1727 1502615 - 1501482 - | putative ABC transport system permease protein TERM 1400 1502160 - 1502174 + g 81 -10 -3.74693 | GAAGCAAAAACGCTT GGGGTT AAA AACCCC TTTAATGAAGTAGAA Hac_1728 1502768 - 1503424 + | putative outer membrane protein rbn 1504273 - 1503455 - | tRNA processing ribonuclease BN bioB 1505187 - 1504339 - | biotin synthase BCGIB 1506510 - 1505314 - | type IIS restriction enzyme protein TERM 1401 1505825 - 1505846 + g 79 -6.7 -4.78572 | TGCGTGTCATGAATT TTTATCGTG TTAG CATGATAAA TTTTCTTACTTGACA TERM 1402 1506404 - 1506430 + g 78 -10.2 -3.21912 | opp_overlap 1506403 1506402 CCCCTATGATTAATG TGGCGTTTTTGG ATG TCAAAATCGCCA TTACTCGCTTCAAAC mod 1508546 - 1506507 - | type II restriction modification enzyme methyltransferase TERM 1403 1506941 - 1506959 + g 76 -3 -5.49809 | overlap 1506943 1506945 CGGTGGGCATTTTAA TGCTCGCT AAA AGCGTGTG TTTTTTTAAAATTTC TERM 1404 1507386 - 1507368 - G 80 -5.9 -5.10877 | overlap 1507370 AGAAGAAATTAAAAA GCCCGCA CTCCC TGCGGCC AAGTCCATCACAAAA TERM 1405 1507608 - 1507619 + g 73 -4.4 -4.88067 | AAAAATTTGCTTAGT GATG CTTG CATC TTTTTCTAAATGCAT TERM 1406 1508320 - 1508333 + g 71 -3.8 -4.87389 | opp_overlap 1508320 TTTTCTATGATTATA GGGA TAACAC TCCC TTTATTTTTAGGGTG Hac_1733 1509154 - 1508579 - | hypothetical protein tdk 1509717 - 1509142 - | thymidylate kinase TERM 1407 1509626 - 1509663 + g 86 -11.5 -3.84587 | opp_overlap 1509636 1509638, overlap 1509621 1509636 GTCCCCCCTGGCTCT TTGGTAAAAAGGGCGTT TTGA AACGCGCTTTTTAACAA TTCTATTTGAGTGCT TERM 1408 1509653 - 1509636 - G 72 -5.5 -4.56597 | opp_overlap 1509621 1509626 1509636, overlap 1509638 GCTCTTTGGTAAAAA GGGCGTT TTGA AACGCGC TTTTTAACAATTCTA TERM 1409 1509636 - 1509653 + g 72 -5.5 -4.63542 | opp_overlap 1509636 1509638, overlap 1509621 1509626 GCTCTTTGGTAAAAA GGGCGTT TTGA AACGCGC TTTTTAACAATTCTA coaD 1510192 - 1509719 - | phosphopantetheine adenylyltransferase ubiD 1510755 - 1510192 - | 3-octaprenyl-4-hydroxybenzoate carboxy-lyase TERM 1410 1510735 - 1510702 - G 77 -6.5 -4.58283 | overlap 1510704 TAATTTTTCCAAAAA CCGCAAGGCTAGGGG GATT CCACTCGCCCCGCTG ATGCCTAAAACTAAT flgA 1511421 - 1510765 - | flagellar basal body P-ring biosynthesis protein FlgA TERM 1411 1511089 - 1511100 + g 81 -4.4 -5.3671 | AGTGTTGTTAGCGGT GATG TTTT CATC TTTTTTAATTGTGTT uvrD 1513463 - 1511418 - | ATP-dependent DNA helicase TERM 1412 1512246 - 1512236 - G 83 -4 -5.63645 | CTAAAAGAGAAAAAA TCAA TTC TTGA GTGATCTTGCCAAGG TERM 1413 1512261 - 1512273 + g 72 -6.9 -3.9392 | AGTGATCTTGCCAAG GCCTC TTG GGGGC TTGTTTAAAATGCGC Hac_1739 1516009 - 1513463 - | hypothetical protein TERM 1414 1513855 - 1513865 + g 70 -8.2 -3.23393 | overlap 1513854 CTAGCCAATCATTAG GGGC TTC GCCC TCTTCTAAACTGGCG TERM 1415 1515918 - 1515930 + g 76 -5.5 -4.86385 | overlap 1515918 ATTTTAGAGTGAATG CCCTT TAA AGGGG TTTCTTTTTCAGCCT serS 1517266 - 1516019 - | seryl-tRNA synthetase TERM 1416 1516122 - 1516145 + g 89 -3.8 -5.79588 | opp_overlap 1516122 ACCGCTAAAGAAGAG CCATTTAGAG TGTG CACTAATTGG TTTTTTTGATTTTCC TERM 1417 1517129 - 1517143 + g 79 -5 -5.31877 | GGCTTGCAAGCTTTC TAACTC AAT GAGTTG TTTTTTATAATGCGT Hac_1741 1518059 - 1517259 - | hypothetical protein xseB 1518314 - 1518063 - | exodeoxyribonuclease VII small subunit TERM 1418 1518235 - 1518261 + g 70 -5.2 -4.67168 | opp_overlap 1518236, overlap 1518236 1518259 TCTAAAGAATCAACA TGCTCTTCAAAA CTT TTTTTAGGAGCG TTTTTAACGCTTTTT TERM 1419 1518259 - 1518271 + g 100 -7.7 -5.41746 | opp_overlap 1518236, overlap 1518236 1518235 AAACTTTTTTTAGGA GCGTT TTT AACGC TTTTTTTGGGGGCTT ubiE 1519066 - 1518326 - | ubiquinone/menaquinone biosynthesis methyltransferase TERM 1420 1518999 - 1518975 - G 72 -5.7 -4.57516 | overlap 1518976 1518979 ACATCTAAACCAAAA CTTATCAAGCG ATT CGCTTGATCAT AAGAGCTAGCTATAT TERM 1421 1518998 - 1518976 - G 75 -9.2 -3.33425 | overlap 1518975 1518979 CATCTAAACCAAAAC TTATCAAGCG ATT CGCTTGATCA TAAGAGCTAGCTATA TERM 1422 1518995 - 1518979 - G 78 -10.9 -2.82666 | overlap 1518976 1518975 CTAAACCAAAACTTA TCAAGCG ATT CGCTTGA TCATAAGAGCTAGCT TERM 1423 1519014 - 1519032 + g 89 -6.1 -5.5604 | TAAGAGCTAGCTATA TCATCAA ACATG TTGATGA TTTTTTCTTGCTTGA Hac_1744 1519528 - 1519076 - | hypothetical protein Hac_1745 1520106 - 1519534 - | hypothetical protein Hac_1746 1521223 - 1520093 - | ABC transporter permease TERM 1424 1520199 - 1520184 - G 86 -7.6 -4.88388 | opp_overlap 1520184 ATAAGCGCATAAAAA TGGATG GACA CATCCA TAAATTCGGCATGCA Hac_1747 1522317 - 1521220 - | ABC transporter permease Hac_1748 1523332 - 1522328 - | hypothetical protein Hac_1749 1524891 - 1523344 - | hypothetical protein TERM 1425 1523590 - 1523563 - G 70 -7.8 -3.61244 | opp_overlap 1523551 1523563 1523562 1523585, overlap 1523585 CACGCTAGAAAGCAA GCTCTCGTATTC TTTC AAATAAGAGAGC GTCTCTTTATAAGTC TERM 1426 1524619 - 1524599 - G 76 -4.8 -5.08178 | gap 1, overlap 1524612 AGATACACATAAAAA GCGCTCAAA TCAA TTTGAG-GC AAAAAAGAAAGCTTG Hac_1750 1526212 - 1524893 - | hemolysin domain-containing protein TERM 1427 1524920 - 1524931 + g 72 -5.8 -4.4767 | CTTATTTTCTTTAAT CGCT TTCA AGCG TTTTATCCTCGCTCC pit 1527923 - 1526322 - | phosphate permease Hac_1752 1528061 - 1528330 + | hypothetical protein TERM 1428 1528424 - 1528434 + G 72 -2.4 -5.28826 | ATCGTATTATGCTAA AGCG TTG CGCC TTTTTTCTGAAGTTT Hac_1753 1528341 - 1528952 + | hypothetical protein murE 1528956 - 1530299 + | UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase tal 1530303 - 1531253 + | transaldolase TERM 1429 1531258 - 1531287 + F 73 -4.4 -5.07652 | AGAGTTTTTGATTTT TAAGGGTTTTTT GGATAG AATAGACCCTTA TTTTATTTTAAAGGA rplY 1531308 - 1531844 + | 50S ribosomal protein L25/general stress protein Ctc pth 1531852 - 1532412 + | peptidyl-tRNA hydrolase TERM 1430 1532452 - 1532462 + G 73 -2.6 -5.19212 | TTTGTAGGGTGGTAT TATT TCA AATA TTTTTTAATCGTGCT TERM 1431 1532754 - 1532771 + G 83 -7.7 -4.64844 | CACGGCGATTTATGT GGGGTTG AATG CAACTCC TTTTGTGTATATGGA Hac_1758 1532422 - 1533489 + | hypothetical protein Hac_1759 1533672 - 1533896 + | hypothetical protein rocF 1535363 - 1534413 - | arginase TERM 1432 1534962 - 1534947 - G 70 -9 -3.13109 | overlap 1534946 GACACGATTTAAAAC CATGCC TAAA GGCATG CCATGGATGTGTTTT Hac_1762 1536152 - 1535376 - | amino acid permease fragment 3 rocE 1536605 - 1536162 - | - COG0833E amino acid permease fragment 2 rocE 1536727 - 1536593 - | - COG0833E amino acid permease fragment 1 ald 1536993 - 1538135 + | hypothetical protein TERM 1433 1538213 - 1538202 - f 74 -3 -5.46629 | opp_overlap 1538202 AATATTTCAAAAAAA CATT TTTT AATG TTATAATCTATCTAT fragment 1538383 - 1538502 + | - hypothetical protein fragment 1538772 - 1538939 + | - hypothetical protein fragment 1538977 - 1539180 + | - hypothetical protein fragment 1539227 - 1539406 + | - hypothetical protein TERM 1434 1539695 - 1539675 - T 80 -7.6 -4.18094 | overlap 1539676 GAAAGCACGCTAAAA CTCTAGGG GAATA CCCTAGAA AGTGAATACATAATT TERM 1435 1539694 - 1539676 - T 74 -8.9 -3.10134 | overlap 1539675 AAAGCACGCTAAAAC TCTAGGG GAATA CCCTAGA AAGTGAATACATAAT omp33 1540445 - 1539690 - | outer membrane protein 33 TERM 1436 1541371 - 1541351 - g 80 -9.7 -3.65812 | opp_overlap 1541350 1541349 TTTTCTTTAACACAA CGCCCCT TAGTGCT AGGGGCG GAATTTTGCTTGAGT ppnK 1540724 - 1541575 + | inorganic polyphosphate/ATP-NAD kinase recN 1541599 - 1543173 + | DNA repair protein RecN TERM 1437 1543368 - 1543335 - g 73 -4.5 -5.00616 | opp_overlap 1543336 1543337 1543361, overlap 1543336 GGTTTGTCTAAAAAA CCGCTAGAGAGCGTT TTAA AAAACGCTCTAGCGC TAGATTTTTGTTTGA TERM 1438 1543367 - 1543336 - g 70 -8 -3.60048 | opp_overlap 1543336 1543337 1543361, overlap 1543335 GTTTGTCTAAAAAAC CGCTAGAGAGCGTT TTAA AAAACGCTCTAGCG CTAGATTTTTGTTTG TERM 1439 1543361 - 1543372 + G 73 -3 -5.30616 | opp_overlap 1543336 1543335, overlap 1543337 CGTTTTAAAAAACGC TCTA GCGC TAGA TTTTTGTTTGAATAA TERM 1440 1544012 - 1543995 - g 100 -3.5 -6.38492 | AGCAAGAAAAAAAAA CAAAAAT CGCA ATTCTTG TATTTAGAAGAAGAG Hac_1773 1543170 - 1544477 + | fibronectin/fibrinogen-binding protein Hac_1774 1544496 - 1544792 + | hypothetical protein TERM 1441 1545264 - 1545241 - T 100 -11.8 -4.20806 | overlap 1545256 CACTTGAAAAGGAAA CCCCTAAGCT TGAA AGCTTAAGGG AACACTCTTGAGCTC dnaQ 1546419 - 1545571 - | DNA polymerase III subunit epsilon TERM 1442 1545769 - 1545757 - G 70 -7.7 -3.64103 | overlap 1545759 TAGGCATATTTCAAA GAGCT TGT AGCTC GCTAAAGCGTCCGCA rpe 1547065 - 1546412 - | ribulose-phosphate 3-epimerase TERM 1443 1546778 - 1546792 + g 75 -4.2 -5.1417 | TTTAATGAGTTGCAA CACTCT GTG GGGGTG TTTTTCATTTTCTGC fbp 1547137 - 1548009 + | fructose-1,6-bisphosphatase TERM 1444 1548042 - 1548060 + G 71 -6.7 -4.19238 | opp_overlap 1548042 AAATTAGCCTATGAA GAGCGTT TCAAT GACGCTC TTTTGAAATTGCAAG Hac_1781 1548009 - 1548212 + | hypothetical protein TERM 1445 1548280 - 1548297 + G 70 -7.1 -3.81027 | TTTTTACACCCACCC CAAAATC GTGC GATTTTG TTTGGATTCATTAAA TERM 1446 1548588 - 1548601 + G 70 -5.2 -4.65263 | overlap 1548581 AATCTTTAAGCGAAG CGCC TATCGT GGCG TTTATTTTGCCCAAT Hac_1782 1548227 - 1549123 + | putative type II DNA methylase protein TERM 1447 1549572 - 1549582 + GT 78 -3.2 -5.41143 | overlap 1549563 TATGGAGTCGCTAAT GCAG ACA TTGC TTTTTTTAAAGGATC rbn 1550180 - 1549692 - | COG1295S ribonuclease N fragment Hac_1783 1549128 - 1549784 + | hypothetical protein bioB 1550518 - 1550246 - | COG0502H biotin synthetase fragment thyX 1551157 - 1550531 - | FAD-dependent thymidylate synthase glmS 1552977 - 1551184 - | D-fructose-6-phosphate amidotransferase TERM 1448 1552563 - 1552574 + g 70 -5.8 -4.30987 | TCAATAAATCGCTCT CGCT TTTA AGCG TTTCTTCTAAGAGAT Hac_1788 1553217 - 1552978 - | hypothetical protein punB 1553786 - 1553241 - | purine nucleoside phosphorylase TERM 1449 1553396 - 1553377 - G 79 -4.4 -5.27335 | gap 1 GCCTTTAAAGAAAAA GTTTT-AGC CAC GCTCAAAAC GCTAAAAAACTCCAT TERM 1450 1553670 - 1553682 + g 73 -4.1 -5.04987 | TATAAAAATAACGCT CTCTA TAC TAGGG TTTTTTAAGCATATT SEQUENCE gi|109948253|ref|NC_008230.1| Helicobacter acinonychis str. Sheeba plasmid pHac1, complete sequence (length 3661) pHac1_1 234 - 515 + | hypothetical protein pHac1_2 524 - 793 + | hypothetical protein pHac1_3 1151 - 1041 - | hypothetical protein TERM 1 1269 - 1287 + r 91 -5.2 -5.88061 | overlap 1271 1272 AACTCCAAAATTATG TAGCGCGT CAT GCGCGTTG TTTTTTTACTTTTTT TERM 2 1272 - 1284 + r 83 -6.9 -4.90519 | overlap 1271 1269 TCCAAAATTATGTAG CGCGT CAT GCGCG TTGTTTTTTTACTTT pHac1_4 1538 - 1329 - | hypothetical protein pHac1_5 1684 - 1568 - | hypothetical protein TERM 3 2398 - 2374 - g 73 -6.5 -4.33274 | overlap 2375 GGGATAGCATTAAAA CCGCTGATTTT TGG AAAATTAGCGA AACAGAAACTTCAAT repA 1854 - 3476 + | replication A protein