TransTermHP v2.07 (built on Jan 21 2009) 25 bins; sample size is 20000000 --pval-conf=/fs/szasmg2/carlk/TTupdate2/expterm.dat --gc=-2.3 --au=-0.9 --gu=1.3 --mm=3.5 --gap=6 --max-len=59 --min-stem=4 --max-loop=13 --min-loop=3 --uwin-length=6 --uwin-require=3 --max-hp-score=-2 --max-tail-score=-2.5 --loop-penalty=1,2,3,4,5,6,7,8,9,10,11 --start-cut=0 --end-cut=25 Genes: 0.601095 %AT, 1433384 nt, 8564 terms. Intergenic: 0.678279 %AT, H2T: 157465 nt, 813 terms; T2T: 41376 nt, 696 terms; H2H: 49953 nt, 625 terms. Each terminator entry starts in column 3 and is of the form: term # start - end +/- regionconf hp tail | notes Followed by the sequence of the 5' tail, 5' stem, loop, 3' stem, and 3' tail. Genes are interspersed, and start the first column. SEQUENCE gi|108562424|ref|NC_008086.1| Helicobacter pylori HPAG1, complete genome (length 1596366) HPAG1_1536 1274 - 513 - | hypothetical protein TERM 1 1442 - 1461 + r 76 -3.6 -5.37865 | overlap 1446 CTTAGTTCTATAGAT TTCATGCT TTAA AGCATCAA TTTTTTGGTTATTGC nusB 1945 - 1529 - | transcription antitermination protein NusB TERM 2 1840 - 1863 + g 84 -2.4 -5.77856 | overlap 1842 1852 TGTTTTTAATCTTTT TTTCTTCTAG CATG CTGGAAGCGA TTTTTTTAATTTCTT ribH 2417 - 1947 - | riboflavin synthase subunit beta HPAG1_0003 3257 - 2427 - | 2-dehydro-3-deoxyphosphooctonate aldolase TERM 3 2504 - 2514 + g 79 -6.8 -4.62069 | GCATGTTCGCCCCAT CGCT TAG AGCG TTTTTAGGATCAACA HPAG1_0004 3909 - 3244 - | beta-carbonic anhydrase TERM 4 4371 - 4353 - g 81 -5.9 -5.01732 | AACGCTCTTAAAAAA CGCCCCT TGATT ATGGGCG TGAGCGCTTTAACCA HPAG1_0005 4032 - 4715 + | orotidine 5'-phosphate decarboxylase panC 4716 - 5546 + | pantoate--beta-alanine ligase HPAG1_0007 6020 - 6091 + | hypothetical protein HPAG1_0008 6138 - 6332 + | hypothetical protein TERM 5 6439 - 6453 + T 74 -2.9 -5.40279 | TGTAAAACGCATTTT CTTAA AGTTC TTAAG TTTTATTTTATTTTC TERM 6 6574 - 6560 - T 89 -8.6 -4.67651 | opp_overlap 6560 6559 AGACTTTAAAAGAAA TCCCTT AAG AAGGGA GTTTCACAAAGGGTT HPAG1_0009 8493 - 6598 - | outer membrane protein HopZ TERM 7 8879 - 8863 - R 88 -7.2 -4.96848 | opp_overlap 8863 TTTGTGAGATAAAAA GCCCCC AAGAA GAGGGC CTTTATAAAAAATGG TERM 8 8933 - 8904 - R 72 -4.9 -4.75404 | gap 1 AAATGGTATTAAAAA GCAAGGG-GGCTTA CAT CATGCCACCCATGC CTCCCATACCGCCCA groEL 10554 - 8914 - | chaperonin GroEL TERM 9 8969 - 8979 + g 76 -2.4 -5.39905 | CCCATATCAGGCATT GCTG GGG CCGC TTTTTCTTCTTTGAT TERM 10 10414 - 10430 + g 70 -3 -5.08824 | gap 1, overlap 10410 GCCGTCTTTGGTGAT GCT-TGG AGCG CCATAGC TTTTTTGGATCAACA groES 10935 - 10579 - | co-chaperonin GroES TERM 11 10611 - 10626 + g 73 -7.6 -4.0044 | opp_overlap 10603, overlap 10596 10603 10593 CATGACAGCAAGCTT CATGCT CTTT AGCATG TTTATGGTCATGATT TERM 12 10766 - 10754 - G 75 -7.7 -4.09685 | opp_overlap 10754 10753 TTGTATTTGCCAAAA GCGAT CAC ATCGC CTTCTTTAACGCATT TERM 13 12364 - 12376 + G 71 -4.9 -4.5528 | TAAAGAAATGTTAGG GTTTT TAA AAAAC TTTTCCTTGCTTTTA TERM 14 12528 - 12550 + G 71 -4.8 -4.58283 | overlap 12523 AAAAGTTCGCTCATG TTCCTAACAC GAT GGGTTTGGAA TTTTTAGAAAAATTA TERM 15 12862 - 12850 - g 85 -6.9 -5.09895 | opp_overlap 12850 12849 GATCTATTTAAAAAA GGCCC GCC AGGCC ATTATGAAATTAAAA dnaG 11222 - 12901 + | DNA primase TERM 16 13928 - 13896 - g 73 -6.9 -4.28018 | AATAGGGGATGAAAA GCGCGAGCTTTACCC TTT GGATAAAGAGAGCGC TAGGGAATATTTGTT HPAG1_0013 12898 - 13950 + | hypothetical protein TERM 17 14144 - 14154 + G 73 -8.2 -3.86063 | opp_overlap 14143 GCGAAGAAAAGGACG CCCC TAA GGGG TTATTCCCTTTTTAT HPAG1_0014 14035 - 14865 + | hypothetical protein HPAG1_0015 15010 - 15291 + | hypothetical protein TERM 18 15451 - 15476 + G 70 -2.5 -5.14965 | TATTGTATTTAGGGT TTTTAGCGCTC TTTA GCGTGCTGGAA TTTTTTGATGAAGAT HPAG1_0016 15291 - 15554 + | hypothetical protein TERM 19 16186 - 16174 - g 83 -9.1 -4.07885 | opp_overlap 16172 16174 16174 GATCTCCCTTTAAAA CCCCT AGT AGGGG GGTATTTGAGCGATA TERM 20 17397 - 17382 - g 76 -7.6 -4.21908 | opp_overlap 17381 17382 17393 17396 CACCATCACCCAAAA CCCTAA AGAC TTAGGG CTTTTAGCCTATTAC HPAG1_0017 15556 - 17919 + | ATPase/DNA transfer protein HPAG1_0018 18152 - 19561 + | hypothetical protein HPAG1_0019 19657 - 20622 + | chemotaxis protein TERM 21 20707 - 20684 - g 83 -3.2 -5.61596 | gap 1, overlap 20685 ACGCTTAGAAAAAAA CGCCAAGATTT TAG AAATCGTG-CG CCAACAAAGTGGGGC HPAG1_0020 20619 - 21836 + | carboxynorspermidine decarboxylase TERM 22 21838 - 21852 + T 74 -5.7 -4.63542 | opp_overlap 21838 AAAACAGAAATTAAA GCCTT TGATT AAGGC TTTTTGGGGCTTGTA HPAG1_0021 22412 - 21846 - | lipid A 1-phosphatase HPAG1_0022 23993 - 22422 - | lipid A phosphoethanolamine transferase TERM 23 24303 - 24327 + r 100 -12.9 -4.04174 | opp_overlap 24298 ATTTCTAAGAGCGTT CCCCTAAGCCT AAA AAGCTTAGGGG TTTCCTTATGTGAAG HPAG1_0023 26678 - 24612 - | outer membrane protein HopD TERM 24 27093 - 27113 + r 73 -8.3 -3.39895 | TTGGGGCGTTTTCAT GCGGTTATT AAA AATTACCGC TTGCTTGGTGCGAGA gltA 28487 - 27207 - | type II citrate synthase TERM 25 27314 - 27335 + g 70 -9.4 -2.60211 | opp_overlap 27312 27314, overlap 27313 27312 TGCCAATGACAAACA CCGGTGTG AAAAAA CGCACCGG GATTTTTAAAGCCCT TERM 26 27714 - 27676 - G 79 -9.7 -3.64703 | gap 1, overlap 27688 GCCCCGCCATGCAAA TGCCCCCATAAAGCGCTA ATGC CAGCACTT-ATGGCGGCA TAAGGATGCACGCCG TERM 27 28986 - 28958 - g 70 -8.2 -3.66301 | gap 1 ATCACAAAGAATTAA GCCCAG-AAGAGC AATG GCTCTTACCGGAC ACTATTGAAGCGATC HPAG1_0025 28696 - 29973 + | isocitrate dehydrogenase HPAG1_0026 30034 - 30567 + | hypothetical protein HPAG1_0027 31200 - 30544 - | dethiobiotin synthetase HPAG1_0028 32937 - 31204 - | hypothetical protein TERM 28 32264 - 32274 + g 82 -4 -5.52909 | overlap 32269 ATGAAGTCTCGCTTA CTAT CCA ATAG TTTTTTTAGCTGTTG HPAG1_0029 33046 - 33459 + | hypothetical protein HPAG1_0030 33474 - 33749 + | hypothetical protein TERM 29 34969 - 34950 - g 85 -4.2 -5.53991 | overlap 34953 GATCGAGGAAAAAAA TCAGCCCT AAAA AGGGCAAA AAAATCGGCGTTGAT TERM 30 35729 - 35714 - g 73 -5.4 -4.65153 | TTAGACAAATTAAAA GCCCTA GCGC TAGAGC AAGACATAACCTTAA TERM 31 35805 - 35784 - g 74 -3.7 -5.02074 | CCATCGCGCAAAAAA GCTACCAAA CGAC TTTAGGAGC GAGAGAAATTAAAAA TERM 32 35835 - 35823 - g 100 -4.9 -5.75822 | overlap 35826 GAGAAATTAAAAAAA TCATT CAT AATGA AATCAAAACTAAATT HPAG1_0031 33749 - 35974 + | ATP-dependent C1p protease HPAG1_0032 35964 - 36314 + | aspartate alpha-decarboxylase HPAG1_0033 36325 - 36618 + | hypothetical protein TERM 33 37455 - 37438 - g 74 -6.3 -4.32034 | opp_overlap 37451, overlap 37440 TTATCATCACTAAAA TAGGCAA TCAT TTGCCCA AAGGCCTAGATTTTT HPAG1_0034 36615 - 37613 + | hypothetical protein TERM 34 38234 - 38246 + G 85 -4.1 -5.66229 | AATGCTTCGCTCTTG GGTTT TAC AAGCC TTTTTTGTTGTTGGT HPAG1_0035 37621 - 38676 + | NADH-ubiquinone oxidoreductase subunit HPAG1_0036 38692 - 38805 + | comB7 putative lipoprotein HPAG1_0037 38802 - 39545 + | comB8 competence protein TERM 35 39563 - 39574 + G 72 -3.6 -5.17507 | CGTAAGGTTTTATAT GCTC TCAT GGGC TTTTTGTTGGCTTTT TERM 36 39578 - 39609 + G 82 -6 -5.00616 | overlap 39581 GCTCTCATGGGCTTT TTGTTGGCTTTTAG CGCT TTAAAAGCCGATGA TTTTTTAGAAGAAGC TERM 37 39731 - 39714 - g 71 -4.9 -4.61527 | opp_overlap 39714, overlap 39705 AAAACCGCTCAAAAA TGTCCAA CACT TTGAACA TTGATTACTTTCAAG HPAG1_0038 39542 - 40522 + | comB9 competence protein HPAG1_0039 40515 - 41645 + | comB10 competence protein TERM 38 42167 - 42150 - g 74 -4.9 -4.68593 | gap 1, opp_overlap 42150 GTGAGTATTGAAAAA CCCAACAC GGA GT-TTGGG TATATTGAAAGCCCT TERM 39 42412 - 42397 - g 79 -9 -3.93367 | TTTTTGAACAAAAGA TCGCTC GTTT GAGCGA AAAGAGCATGCAAGA HPAG1_0040 41715 - 43127 + | mannose-6-phosphate isomerase HPAG1_0041 43157 - 44302 + | GDP-D-mannose dehydratase HPAG1_0042 44295 - 45227 + | GDP-fucose synthetase HPAG1_0043 46539 - 45541 - | hydrogenase expression/formation protein HPAG1_0044 48851 - 46542 - | transcriptional regulator TERM 40 46888 - 46900 + gr 74 -7.7 -3.87994 | opp_overlap 46888 46887, overlap 46899 GTAAAAGGGTAAAAG GCGAT CTC ATCGC TTTGTAAGGCTAGAT TERM 41 47495 - 47479 - GR 86 -4.5 -5.4505 | opp_overlap 47479 GTTTTTAAGAAAAAA TTCAAAG TTT CTTTAAA GTGTTTTTCATTTTC TERM 42 48756 - 48745 - GR 88 -7.2 -4.99645 | overlap 48746 AGGGTATAAATAAAA GGGC GCAT GCCC ACGCCTTGAACCACG HPAG1_0045 49783 - 48791 - | hypothetical protein HPAG1_0046 50535 - 49843 - | adenine specific DNA methyltransferase HPAG1_0047 51599 - 50532 - | cytosine specific DNA methyltransferase TERM 43 51306 - 51327 + g 71 -3.7 -4.86939 | gap 1, opp_overlap 51305 51306, overlap 51307 TAAGAATAAAAAATT CCTAGGGTCT TTT AG-CCCTAGA TTTTTCCCTTTATTA HPAG1_0048 52652 - 51621 - | type II DNA modification enzyme HPAG1_0049 53231 - 52662 - | type II restriction enzyme HPAG1_0050 53443 - 53219 - | type II restriction enzyme HPAG1_0051 53777 - 53634 - | adenine/cytosine DNA methyltransferase HPAG1_0052 55305 - 53815 - | sodium/proline symporter HPAG1_0053 58889 - 55332 - | proline/delta 1-pyrroline-5-carboxylate dehydrogenase TERM 44 55937 - 55959 + g 90 -8.4 -5.03747 | opp_overlap 55935 CTTTTTGAGTCAAGC CCTCTAAAGC TTC GCTTAAGGGG TTTTTTGAGGCGTTT TERM 45 56970 - 56945 - G 79 -8.3 -4.0371 | gap 1 TAGTGCCTACAGAAA TGCCCACAGGGA AAT TCCATG-GGGCA ATGACCACACCCACG TERM 46 58047 - 58058 + g 73 -7.2 -4.10453 | opp_overlap 58035 58036, overlap 58037 AAAGCGGATTTTAAT GGGC TTTA GCCC TTTTAAAACCCTTTC TERM 47 59364 - 59354 - g 70 -3.2 -4.89054 | TCTACAAAAAAAGAA GTGC AAT ACAC GCCTAAGGGCTTTTT HPAG1_0054 59216 - 59425 + | hypothetical protein HPAG1_0055 59510 - 59701 + | M-protein HPAG1_0056 59932 - 60528 + | hypothetical protein HPAG1_0057 60529 - 61278 + | hypothetical protein TERM 48 61616 - 61590 - gf 78 -3.8 -5.30155 | TCACTAATGAAAAAA TAGAAAAAACCT TAG AGATCGTTTCTA CTAGCGATGTGGATG TERM 49 62002 - 61987 - gf 74 -6.8 -4.18161 | GACAAAGTTTGAAAA CCCCAC GATA GTGGAG TTCAGAAATAAAGAA TERM 50 62303 - 62317 + GF 70 -3.6 -4.95155 | AACATGGAAAATGGC GTGTTT TTG AAATAC TTTTTATCCTATCCG HPAG1_0058 61289 - 62494 + | hypothetical protein TERM 51 63173 - 63160 - gf 71 -6.7 -3.96216 | opp_overlap 63147 63146 GTGCTAGTCAAACAA GCGTT TGAA AACGC CAAAGAAAAGCAGCT HPAG1_0059 62404 - 63639 + | hypothetical protein HPAG1_0060 63640 - 63738 + | hypothetical protein TERM 52 64222 - 64197 - g 79 -6.8 -4.55004 | AATACAAAAGAGAAA GAGGCGAAAC GCTAGA GGTTCGCCCC ACAACACCCCCTAGC TERM 53 64247 - 64227 - g 75 -9.7 -3.28791 | AGGTTCGCCCCACAA CACCCCC TAGCTAT GGGGGTG GGAGTATTAGAATCA HPAG1_0061 63764 - 64303 + | hypothetical protein HPAG1_0062 64319 - 64579 + | hypothetical protein TERM 54 65244 - 65271 + GF 70 -3.5 -4.91109 | gap 1, opp_overlap 65268, overlap 65245 TTAGCGCTTCTTTAT ACGCTGAT-TTG AAAGA CAAGATCAGCGC TTTTTCTCATAGAGA TERM 55 65845 - 65827 - gf 79 -6.8 -4.57569 | opp_overlap 65826 GTATTGCGTTAAAAA TTGTAAGA AAG CCTTACAA GATTTTGCGGAAAAA TERM 56 65982 - 65958 - gf 81 -5.8 -5.09225 | gap 1, overlap 65962 ATTTGAGTCAAAAAA TCGATCCCGTT TTAG AACGGAA-CGA AAATTATACGCAAAA TERM 57 66193 - 66181 - gf 71 -7.7 -3.56092 | TCATCATGCCCTAAA GGCTT TAC AAGCC GCACTTAAAGACAAC HPAG1_0063 64589 - 66394 + | hypothetical protein HPAG1_0064 66364 - 66783 + | hypothetical protein HPAG1_0065 66785 - 67138 + | hypothetical protein HPAG1_0066 67131 - 67745 + | ATP-binding protein TERM 58 67890 - 67862 - g 70 -3.1 -4.89605 | GAAAAAAACAATAAA TCCGCAGAAGATT TGA AACGCTATGCGGA GTGTTTTAAAGACAG HPAG1_0067 67751 - 69562 + | ATP-binding protein HPAG1_0068 70504 - 69707 - | urease accessory protein UreH HPAG1_0069 71103 - 70504 - | urease accessory protein UreG TERM 59 71057 - 71069 + g 70 -9.1 -3.14132 | opp_overlap 71057 71056 AAAGCTTCAATCAAG GCGGT TTT ACCGC TTCCTACAGGACCAC HPAG1_0070 71899 - 71132 - | urease accessory protein UreF ureE 72423 - 71911 - | urease accessory protein UreE HPAG1_0072 73012 - 72425 - | urease accessory protein/pH-dependent urea-transporter UreI TERM 60 73164 - 73129 - R 95 -4.9 -6.23317 | gap 1, overlap 73130 73131 ATAAAAACAAAAAAA GC-CCCCAATTTTTTG ATAAA CAAAAAATCAGAGAGC TAAAAACTAAGGATT TERM 61 73200 - 73178 - R 73 -9.2 -2.9838 | overlap 73175 73183 GCTAAAAACTAAGGA TTTAAGGAGC ATC GCTCCTAAAA AATCCTAGAAAATGC TERM 62 73195 - 73183 - R 74 -9.1 -3.15252 | overlap 73178 73175 AAACTAAGGATTTAA GGAGC ATC GCTCC TAAAAAATCCTAGAA ureB 74914 - 73205 - | urease subunit beta ureA 75634 - 74918 - | urease subunit alpha lspA 76453 - 75980 - | lipoprotein signal peptidase TERM 63 76271 - 76249 - G 75 -5.6 -4.67038 | overlap 76244 GCCCTAAAATCAAAA GGATTTGCAA GTA TTTCAAACCC CCCTCTAAAAAACTG HPAG1_0076 77784 - 76447 - | phosphoglucosamine mutase TERM 64 76621 - 76636 + g 79 -3.2 -5.43866 | GCTATAACCTTTCAG GCTTTC TAAA GGAGGC TTTTTTTGGACATTC TERM 65 77729 - 77745 + g 83 -12.3 -2.91695 | opp_overlap 77728 77725 77727, overlap 77726 CGCATCACAAACATG GGGGTGA GTT TCACCCC TGCTTTACCCCTCAC rpsT 77874 - 78143 + | 30S ribosomal protein S20 TERM 66 78380 - 78367 - g 73 -2.4 -5.22312 | AGCGATATTAAAAAA CTCA CCGAAT TGAG CAAAGAGCAAAGCTC prfA 78268 - 79326 + | peptide chain release factor 1 TERM 67 79719 - 79703 - f 100 -9.5 -5.83226 | AATGCAATAAAAAAA GAAATCC TTA GGATTTC TCACATTAAGGAGTT HPAG1_0079 79739 - 79996 + | reminiscent outer membrane protein HorA TERM 68 80607 - 80577 - g 70 -9.7 -2.51173 | overlap 80568 80567 80576 ATCAACCCCATCAAC CCCACCAGCAACA AGTGG TGGTGCTAGCGGG AGCACCGTGGCAAGC TERM 69 80988 - 80975 - g 85 -6.7 -5.1287 | overlap 80976 80980 CTGATACGCAAAAAA CGCAA GCCG TTGCG CTTGCAGCTGCTAGT TERM 70 81017 - 80980 - g 77 -9.9 -3.52779 | gap 1, overlap 80975 80976 ACGCAAAAAACGCAA GCCGTTGCGCTTGCAGCT GCT AG-TGATAGCGCAACGAC AACGACAGATGCCAT TERM 71 81531 - 81551 + G 79 -8.3 -4.0896 | overlap 81529 GAACACGAGCTATTT CCAAATGCC TGT GGAATTTGG TTTTAGGAGCAATTT HPAG1_0080 80008 - 81711 + | outer membrane protein HorA TERM 72 81728 - 81753 + F 88 -6.9 -5.29208 | opp_overlap 81734, overlap 81729 CCTTTTTCTTCTTTA TCAATAGAGGG TTTT CTCTCTGTTGG TTTCTTTTTTCTTTT TERM 73 81729 - 81752 + F 75 -8.2 -3.72034 | opp_overlap 81734, overlap 81728 CTTTTTCTTCTTTAT CAATAGAGGG TTTT CTCTCTGTTG GTTTCTTTTTTCTTT TERM 74 82308 - 82320 + G 75 -7.7 -4.06491 | GATTCTTTTTATAGT TACCG CAC CGGTA TTTATATCCCCTTAG TERM 75 82327 - 82338 + G 70 -5.8 -4.42062 | GCACCGGTATTTATA TCCC CTTA GGGA TTTCTTTAAAAGATC TERM 76 82440 - 82430 - g 79 -6.8 -4.57218 | opp_overlap 82430 82429 ACAAGAGAATGAAAA GGCT CAA AGCC CTTATTACAGGAGCA HPAG1_0081 81957 - 83693 + | hypothetical protein TERM 77 83950 - 83929 - g 84 -10.1 -3.91897 | opp_overlap 83914 83913 TGTTTTAGTTAGAAA GCCCCTTGC TTTA GAAAGGGGC GGTTTCACACTAAAA HPAG1_0082 83867 - 83977 + | hypothetical protein HPAG1_0083 86136 - 84115 - | methyl-accepting chemotaxis protein TERM 78 86248 - 86233 - R 88 -6.8 -5.22137 | AAGCAGAAAACAAAA GAGAGC CAAA GCCCTC CAAAGCTCCCCCCAA rpsI 86677 - 86288 - | 30S ribosomal protein S9 rplM 87099 - 86674 - | 50S ribosomal protein L13 HPAG1_0086 87591 - 87403 - | hypothetical protein HPAG1_0087 88950 - 87598 - | hypothetical protein TERM 79 88232 - 88210 - G 78 -4 -5.18371 | overlap 88214 CGGCACAAAATAAAA GCTACCCGCC ACA GGCAAGCACC CTAAATCTAGGCCAT TERM 80 89013 - 89029 + r 71 -5.2 -4.63486 | AGAAAATCAATTCGC CTTCAA AGGGC TTGAAG TTTTATTGACAAAAT HPAG1_0088 90377 - 89004 - | hypothetical protein TERM 81 90192 - 90203 + g 74 -4.4 -4.84033 | GGAATACCACGCTTT GAGA TAGC TCTC TTTTAATTTTTCTCT HPAG1_0089 92476 - 90398 - | RNA polymerase sigma factor RpoD TERM 82 90427 - 90441 + g 74 -9.2 -3.5944 | AATTTCTTAAAATGC GCCCGT ATT GCGGGC TTCTCAATTTTTTAA TERM 83 91631 - 91648 + g 78 -2.7 -5.48163 | TTCTACACGCTTCTT GTCTTTT TCAG AAACGAC TTTTTTCCTTTCTTT TERM 84 92400 - 92413 + g 73 -2.3 -5.1963 | TTGGCTTCTGTTTTA GCTCT TTTG GGGGC TTTTTCTTCGTTAGC HPAG1_0090 93361 - 92666 - | 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase HPAG1_0091 94301 - 93372 - | acyl-carrier-protein S-malonyltransferase TERM 85 94670 - 94623 - H 72 -7.2 -3.91858 | opp_overlap 94628 94629 94658, overlap 94629 94630 TACAGATTTTACAAA TACAAATTTTAGGTTGGGTG AAGAGAGA CACCCAGCCTAAACCTTATA AGGGTTGCGGTATTT TERM 86 94664 - 94629 - H 74 -6.2 -4.40003 | opp_overlap 94628 94629 94658, overlap 94623 94630 TTTTACAAATACAAA TTTTAGGTTGGGTG AAGAGAGA CACCCAGCCTAAAC CTTATAAGGGTTGCG TERM 87 94663 - 94630 - H 78 -9.7 -3.23279 | opp_overlap 94629 94628 94658, overlap 94629 94623 TTTACAAATACAAAT TTTAGGTTGGGTG AAGAGAGA CACCCAGCCTAAA CCTTATAAGGGTTGC HPAG1_0092 94738 - 95736 + | HrgA protein HPAG1_0093 95740 - 96561 + | type II adenine methyltransferase HPAG1_0094 97489 - 96584 - | alpha-1,2-fucosyltransferase TERM 88 97579 - 97593 + r 90 -5.8 -5.63517 | AAGTGGGGTAACGCT TTCAAA TCA TTTGAA TTTTTTATTTGAAAA HPAG1_0095 98115 - 97585 - | hypothetical protein HPAG1_0096 98188 - 99132 + | 2-hydroxyacid dehydrogenase TERM 89 99258 - 99235 - T 74 -3.1 -5.5112 | CCCATTAAGAAAAAA CCTTCAGGC GGATTG ACCCAAAGG CTTTTATTAAATGGG HPAG1_0097 99992 - 99279 - | hypothetical protein HPAG1_0098 101557 - 100097 - | threonine synthase TERM 90 100237 - 100259 + g 78 -2.6 -5.50723 | overlap 100243 TGTTTTTAAGCGTTT CTAGAGCGAC TTT GTCGTTATCG TTTTTCTTTTGCTCG TERM 91 103565 - 103555 - g 81 -6.8 -4.72386 | GAAAGGACGCAAAAA TCGC TCA GCGA AATTGAAGCCAATAT HPAG1_0099 101761 - 103788 + | methyl-accepting chemotaxis transmembrane sensory protein TERM 92 103855 - 103839 - g 87 -5.1 -5.41143 | TATTTTTTAAAAAAA GCTAAAG AGG CTTTTGC GGGTGAAAAAATTGT TERM 93 104754 - 104708 - g 70 -2.7 -5.0538 | gap 2, overlap 104724 TCTTATGGCAAAAAA CTACGATAATTTAAAAGAGTTAA ACC TTAACCC-CTTAAATTAT-GAAG AAGAGTTGTCTTTAA TERM 94 104740 - 104724 - g 70 -5.9 -4.33151 | overlap 104708 TACGATAATTTAAAA GAGTTAA ACC TTAACCC CTTAAATTATGAAGA HPAG1_0100 103788 - 104894 + | hypothetical protein HPAG1_0101 105008 - 105769 + | hypothetical protein HPAG1_0102 106531 - 105752 - | hypothetical protein HPAG1_0103 108259 - 106562 - | methyl-accepting chemotaxis protein TERM 95 108082 - 108095 + g 74 -3.8 -5.0916 | opp_overlap 108082 TTGTCATGTAAGCGA GCGT TTTTTC ACGC TTTTTGTATTGCCCG HPAG1_0104 110206 - 108461 - | 2',3'-cyclic-nucleotide 2'-phosphodiesterase TERM 96 109110 - 109126 + g 77 -7.9 -4.24326 | AAATTGAATAAGGCT GCCGCTG AAA CATCGGC TTTTGCATAATATTT HPAG1_0105 110841 - 110374 - | S-ribosylhomocysteinase HPAG1_0106 112021 - 110879 - | cystathionine gamma-synthase/cystathionine beta-lyase TERM 97 111798 - 111781 - G 75 -2.7 -5.2696 | gap 1, overlap 111783 GTAAAAGGGAAAAAA CAGCGTGG ATC CCA-GCTA GTCCAGAGGCAAAAG HPAG1_0107 112962 - 112042 - | cysteine synthetase HPAG1_0108 113121 - 113642 + | hypothetical protein TERM 98 113733 - 113750 + T 79 -8.5 -3.85362 | opp_overlap 113745, overlap 113745 CCTTAAAAAGCTATC GCTTGAT TACA ATCAAGC TTTGATACTTGGATT TERM 99 113851 - 113823 - T 79 -6.8 -4.68539 | gap 1 ATGAAAATGAGAAAA GCAAGCAGGTTTT GATT AAAACC-GCCCGC TTGAAAGAAGTTTTA HPAG1_0109 115738 - 113876 - | molecular chaperone DnaK TERM 100 114933 - 114943 + g 72 -3.2 -5.15117 | TCAGTCTCCATCGCA GAGC TCA GTTC TTTTTTAGCGTTTTC TERM 101 115698 - 115687 - G 71 -7.2 -3.86015 | opp_overlap 115686 CATTGCCTTCATAAA CCGC CATT GCGG AGTTGGTTGTCCCTA HPAG1_0110 116344 - 115769 - | co-chaperone and heat shock protein 24 HPAG1_0111 117174 - 116344 - | heat-inducible transcription repressor TERM 102 116792 - 116802 + g 79 -3.2 -5.40474 | ACTCTTTCTAAACGC TCCA AAC TGGG TTTTTTTAACAGCGT TERM 103 116841 - 116853 + g 86 -7.7 -4.87893 | CAAAATTTTCACTCG CGCTT TTT AAGCG TTTTTCATTCACCTT HPAG1_0112 117385 - 118023 + | hypothetical protein HPAG1_0113 118044 - 118340 + | hypothetical protein HPAG1_0114 120236 - 118350 - | hypothetical protein TERM 104 119243 - 119231 - G 70 -3.4 -4.98531 | overlap 119232 119233 GGTGCAAATCAAAAA GGTT GGTAT AACC AAAGGGGCGGAAACT TERM 105 120265 - 120276 + r 76 -7.2 -4.18018 | opp_overlap 120259 120265, overlap 120272 120273 AATAACTGATAAAAA GGGC TAAC GCCC TTTTGAATGAAAAGG TERM 106 120276 - 120265 - R 88 -7.2 -4.94222 | opp_overlap 120265 120272 120273, overlap 120259 AATAACTGATAAAAA GGGC TAAC GCCC TTTTGAATGAAAAGG TERM 107 120273 - 120293 + r 80 -9.8 -3.4811 | opp_overlap 120265 120259 120290 120291, overlap 120265 120272 ATAAAAAGGGCTAAC GCCCTTTT GAATG AAAAGGGC TGTTATTGTAAAAGC HPAG1_0115 121840 - 120296 - | flagellin B TERM 108 124174 - 124159 - g 87 -3.2 -5.78622 | overlap 124161 124169 CTATCGTAAAAAAAA GGTGCA TGAA TGCATC CAATGCAAAGAGCGC HPAG1_0116 122006 - 124216 + | DNA topoisomerase I TERM 109 124323 - 124302 - g 74 -4.5 -5.00616 | opp_overlap 124305, overlap 124305 TCGCCCTCTAAAAAA CAATGCAAT TACA ATTGCATTT ATTGCGAGTTGGGTA TERM 110 124320 - 124305 - g 77 -6.2 -4.61482 | opp_overlap 124305, overlap 124302 CCCTCTAAAAAACAA TGCAAT TACA ATTGCA TTTATTGCGAGTTGG TERM 111 124305 - 124320 + G 71 -6.2 -4.183 | opp_overlap 124305 124302 CCCTCTAAAAAACAA TGCAAT TACA ATTGCA TTTATTGCGAGTTGG TERM 112 124593 - 124607 + G 70 -3.6 -4.87133 | CAAGCCTTAAAGGAA TTTGAC ATC GTTAAA TTTTCTTTAGACGCT HPAG1_0117 124209 - 125135 + | hypothetical protein HPAG1_0118 126492 - 125275 - | hypothetical protein TERM 113 126646 - 126636 - R 71 -5.4 -4.65916 | opp_overlap 126636 TCCATTCCAACAAAA CTTG ATA CAAG TTTTCCTTGATACCC HPAG1_0119 128009 - 126777 - | hypothetical protein HPAG1_0120 130535 - 128097 - | phosphoenolpyruvate synthase TERM 114 128681 - 128700 + g 74 -5 -4.78572 | gap 1 AATACCGACTAGCCC CCCTATAGC CAA GC-ATGGGG TTTTCTTCATTAGGC TERM 115 128829 - 128849 + g 73 -8.5 -3.66654 | GCCAATGCCTTCAGC GATTTTTTT CAC AAAAAAATC TTTAGGGTTAGCATA TERM 116 128873 - 128889 + g 86 -2.3 -5.95539 | TAGCATAGCCTGCCA TGAGGTT TTC AATTTCA TTTTTTTCTTTCACG HPAG1_0121 130715 - 130852 + | hypothetical protein TERM 117 132424 - 132434 + G 79 -6.8 -4.55295 | AGCGAACATTTTGGA GGGA ATT TCCC TTTCTTTGTCGCGCC thrS 130909 - 132747 + | threonyl-tRNA synthetase infC 132744 - 133355 + | translation initiation factor IF-3 rpmI 133336 - 133530 + | 50S ribosomal protein L35 rplT 133624 - 133974 + | 50S ribosomal protein L20 TERM 118 134023 - 134054 + F 71 -6.8 -3.98991 | opp_overlap 134024 134032, overlap 134024 AAAAAAGGTGAGAGG ATTTAGGAATTTTT ACTA AAAAGTTCCTAAAA TTGATTTTTGTTTCA TERM 119 134024 - 134053 + F 81 -10.3 -2.97768 | opp_overlap 134024 134032, overlap 134023 AAAAAGGTGAGAGGA TTTAGGAATTTTT ACTA AAAAGTTCCTAAA ATTGATTTTTGTTTC TERM 120 134269 - 134255 - g 75 -2.8 -5.1963 | CCTAAGCAAGAAAAA GCTATT AAG ACTAGC CCTACCAAAAAAGGT HPAG1_0126 134174 - 135034 + | outer membrane protein HorB HPAG1_0127 135086 - 135211 + | hypothetical protein HPAG1_0128 135378 - 135809 + | hypothetical protein HPAG1_0129 136221 - 137081 + | hypothetical protein HPAG1_0130 139050 - 137683 - | L-serine deaminase TERM 121 138045 - 138058 + g 78 -3.8 -5.18726 | ACCCCGCTTCTGCGC CGCT CAAGGA AGCG TTTTTCTTGTAAAGA HPAG1_0131 140291 - 139050 - | L-serine transporter TERM 122 141515 - 141499 - g 83 -5.1 -5.27335 | overlap 141501 GTGTTGAAAGAAAAA CGCCATA TTT TATGGAG CATTGATCCCATGCA HPAG1_0132 140473 - 141822 + | tyrosine-regulated 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase HPAG1_0133 142115 - 142249 + | hypothetical protein TERM 123 142371 - 142349 - T 74 -7 -4.2558 | opp_overlap 142347 TAGGGGCTATTAAAA GGGAATGGTT TCA AAACACTCCC TATCCCTTATGAAGT HPAG1_0134 142938 - 142480 - | bacterioferritin comigratory protein TERM 124 142808 - 142842 + g 76 -3.6 -5.24129 | overlap 142802 142810 TCTAGAGTGCATCCG GGGGTGTTGTCTTT AGGGTAG AAATACAGCACCAC TTTTTTATGGAGCAA HPAG1_0135 143583 - 142948 - | hypothetical protein HPAG1_0136 145021 - 143576 - | putative iron-sulfur protein HPAG1_0137 145779 - 145051 - | hypothetical protein TERM 125 145092 - 145112 + g 86 -7.6 -5.08824 | opp_overlap 145092 AGTCGTAAAAATGCA TGGGCTTT GTTAG AGAGCCCA TTTTTTGCATAGCGG TERM 126 146043 - 146076 + G 78 -3 -5.46276 | overlap 146024 AGGCCATATTTGGCT GAGTGCTTTAGTCG CACTTT CGCCTATTGCGCTC TTTTTTGTCTCTCTT TERM 127 146174 - 146198 + G 76 -2 -5.38951 | opp_overlap 146175 146176, overlap 146175 146176 TATTTGTGTATAAAA TGCCCGCTCA AATGG TGAGCGCGAG TTTTTTCTATGGCTT TERM 128 146234 - 146257 + G 78 -3.8 -5.27335 | overlap 146226 ATGGCTTGTGGCCGA TCGCATGGAT TGTG ATCGCTGCGA TTTTTCTTTACAACC TERM 129 146328 - 146341 + G 80 -8.1 -4.42667 | CATTTTGAGTTTGAC TCCGG ATCA CCGGA TTTTAGTGATTTTGA TERM 130 146584 - 146596 + G 72 -3.3 -5.17576 | overlap 146585 TCTCAAATGGTGGGC AGGGT GTT ACCCA TTTTTTCCATTGGTA HPAG1_0138 145999 - 147648 + | L-lactate permease TERM 131 148138 - 148155 + G 71 -9.9 -2.84745 | overlap 148137 148134 AGCAGCGATTTTAGT GGGCTTA GGGT TAAGCCC CTTATATTCTGCCGG TERM 132 148373 - 148389 + G 75 -2.9 -5.31519 | AAAGAAACTTTTCCG GCCGT TTTTATC GCGGC TTTTTCTTTCGCTAT TERM 133 148636 - 148650 + G 70 -5.7 -4.41348 | opp_overlap 148636 TGTTTTATGGATACA GCCTT TTTTT AAGGC TTTATTTGAAAAAGA TERM 134 149125 - 149135 + G 71 -6.8 -4.11216 | CGCCCAACGATTGCA CCTC CCT GAGG TTTTAACCCTAACGG HPAG1_0139 147698 - 149353 + | L-lactate permease HPAG1_0140 150363 - 149377 - | A/G-specific adenine glycosylase TERM 135 149621 - 149636 + g 78 -4 -5.24129 | opp_overlap 149621 TGGTGCATCCCCAAA TAGAGT TTTT GCTCTA TTTTTTCTAAAGCGA TERM 136 149926 - 149916 - G 70 -3.2 -5.00138 | GATTCAAACCAAAAA GCCT TAA AAGC GTTCGTTTGATATTA HPAG1_0141 151812 - 150364 - | C(4)-dicarboxylates and tricarboxylates/succinate antiporter TERM 137 150632 - 150618 - G 77 -4.9 -4.8543 | opp_overlap 150625, overlap 150628 150629 CAATCCCTACAAAAA GCGCA AATAA CGCGC TCACATGAGCGGTGA TERM 138 151726 - 151712 - G 75 -2.8 -5.30339 | ATGAAAATACAAAAA TAAAGC CAT GCGTTA GGGTTTAAACCATCC HPAG1_0142 151982 - 153448 + | cytochrome c oxidase heme b and copper-binding subunit HPAG1_0143 153461 - 154159 + | cytochrome c oxidase monoheme subunit HPAG1_0144 154167 - 154388 + | cytochrome c oxidase subunit Q HPAG1_0145 154390 - 155268 + | cytochrome c oxidase diheme subunit HPAG1_0146 155279 - 155485 + | hypothetical protein TERM 139 155898 - 155878 - g 81 -5.5 -5.03715 | ATGACGCTCAAAAAA TAGAATTAG TGG CTAACCCTA AAGATTTGCTAGACA HPAG1_0147 155586 - 156170 + | hypothetical protein HPAG1_0148 156183 - 156773 + | hypothetical protein TERM 140 156789 - 156779 - f 74 -3.2 -5.48825 | opp_overlap 156766 156765, overlap 156766 GAGCATTTAAAAAAA TGCC TTT AGCA TTTTTTATTAACACT TERM 141 157549 - 157565 + G 86 -8.1 -4.84311 | overlap 157557 CCTTTTATGGGGAGT GGATTTT TTA AAAATCC TTTTATTGTATGGGA HPAG1_0149 156854 - 157621 + | hypothetical protein HPAG1_0150 158481 - 157618 - | hypothetical protein TERM 142 157768 - 157797 + g 73 -10.1 -2.80244 | overlap 157767 CGTTGAAGTTTCATT CGCATACAAGCTT AAAT AAGTTTGTAAGCG CTCTTTATTGACACG recA 158580 - 159623 + | recombinase A eno 159636 - 160916 + | phosphopyruvate hydratase HPAG1_0153 160909 - 161184 + | hypothetical protein HPAG1_0154 161196 - 161798 + | hypothetical protein TERM 143 162154 - 162140 - g 77 -4.9 -4.96773 | opp_overlap 162140 TGAATCAAAAAGAAA GGGAG AAACG CCCCC TTTTAAATAATCTCA aroK 161803 - 162291 + | shikimate kinase HPAG1_0156 162312 - 163268 + | hypothetical protein HPAG1_0157 164383 - 163265 - | lipopolysaccharide 1,2-glycosyltransferase TERM 144 164397 - 164407 + H 74 -5.4 -4.90917 | overlap 164393 ATTTTAAGTTGTTTT CCTA AAA TAGG TTTTTAATTAAATTT TERM 145 164889 - 164879 - g 89 -5.4 -5.40072 | opp_overlap 164879 TGGCGTTCAAAAAAA CCTT CCA AAGG CTATCTATTATTATA HPAG1_0158 164535 - 165455 + | cysteine-rich protein D HPAG1_0159 166718 - 165996 - | hypothetical protein HPAG1_0160 167690 - 166719 - | delta-aminolevulinic acid dehydratase TERM 146 167354 - 167372 + g 76 -4.6 -5.17353 | opp_overlap 167354 167345 ACAAATCCGCTATAA CGATTAAA TCC TTGAATCG TTTTTTAATCGCTCT HPAG1_0161 169045 - 167762 - | putative histidine kinase sensor protein HPAG1_0162 169748 - 169071 - | response regulator TERM 147 169905 - 169945 + r 100 -5.8 -5.93252 | gap 1, overlap 169929 GTTATTAATGGGATT TAAGGCTTTG-TTTTCA TGGAATAT TGAAAAATAAAGCCTTA TTTTTTGTTTTTAAA HPAG1_0163 170456 - 169980 - | hypothetical protein TERM 148 170253 - 170271 + g 74 -3.8 -5.1287 | TGTGATTTTTTCTTG CGTTTCTA TTT TAGCAGCG TTTTTTGGCTCTAAA HPAG1_0164 170698 - 170435 - | hypothetical protein HPAG1_0165 172013 - 170745 - | collagenase HPAG1_0166 172747 - 172016 - | hypothetical protein prfB 173913 - 172822 - | peptide chain release factor 2 TERM 149 173514 - 173566 + g 71 -9.9 -2.90617 | overlap 173513 173516 173532 CAGTCCCCCCCGCTC CAGGCTGAATGGTGATAATGGCGTT TGA AGCGTCGTTTTCACCGCTTAGCATG ATTTCAATTTCCACT TERM 150 173864 - 173852 - G 70 -7.7 -3.78775 | opp_overlap 173852 173851 GGCTTGATGATTAAA GCGAT ATT ATCGC ATTTGTTTTGCAAGC HPAG1_0168 175149 - 173974 - | molybdopterin biosynthesis protein TERM 151 174453 - 174465 + g 72 -3.4 -5.07567 | GGATGACATCATAGC CTTG CAATT CAAG TTTTTTAAGCTGTAA fliR 175926 - 175159 - | flagellar biosynthesis protein FliR TERM 152 175550 - 175560 + g 79 -6.8 -4.63527 | AACAAAAGGGCTTGC CCCA CAA TGGG TTTTTGCGATCCTGA HPAG1_0170 176648 - 175920 - | hypothetical protein TERM 153 176819 - 176805 - H 77 -7.8 -4.0847 | TATATAGAATAATAA CCCTGG TAA CCAAGG AAAGAGAATACATAC HPAG1_0171 177121 - 178020 + | peptidyl-prolyl cis-trans isomerase C HPAG1_0172 178037 - 178960 + | fructose-bisphosphate aldolase HPAG1_0173 178982 - 179545 + | elongation factor P HPAG1_0174 180226 - 180495 + | hypothetical protein HPAG1_0175 181509 - 180487 - | sialic acid synthase HPAG1_0176 182154 - 181513 - | ABC transporter TERM 154 181790 - 181766 - G 72 -10 -2.52464 | opp_overlap 181787 CCGCCGCTCAATTCA CCCACACCTT GTTTT AGGGTGTGGG CTATGCCTAATTGTT TERM 155 181930 - 181948 + g 74 -9 -3.55761 | TTTTAAGCGCCGTAA TTCCAAAA GCT TTTTGGAA TTTAAGGCATAAATA HPAG1_0177 183428 - 182154 - | apolipoprotein N-acyltransferase TERM 156 182501 - 182472 - G 70 -3.1 -5.00616 | gap 1 GCTCTCGCCAAAAAA GAGTTT-TTCAA GGGGTTT TTGAAGAAACTC CGGTAAAGGCATCGT TERM 157 182548 - 182560 + g 79 -3.3 -5.41143 | opp_overlap 182537 AAGATCACTTTATCA GCGAT TTG AACGC TTTTTTTAGAAAATA TERM 158 182729 - 182745 + g 73 -8.7 -3.75884 | CAATCAGGGTTTTTT GCTTGCT TTG AGCGAGC TTGATTTCTTTAAGA HPAG1_0178 183653 - 184354 + | hypothetical protein TERM 159 185610 - 185592 - g 83 -7.5 -4.72007 | TTGCAGGAAAAGAAA TCGCTAA CGGCT TTAGCGA GTTGAACGACCCTTT lysS 184364 - 185869 + | lysyl-tRNA synthetase TERM 160 186907 - 186894 - g 76 -4.5 -5.07486 | CACCGTGAATAAAAA CACCA TTCC TGGCG AAACGCGCAACCCTT glyA 185869 - 187119 + | serine hydroxymethyltransferase HPAG1_0181 187130 - 187672 + | hypothetical protein TERM 161 187883 - 187852 - g 76 -11 -2.54325 | overlap 187851 187849 CGCTCCTAAAGAGAC TTTTTTGCAAACCG ATAG CGGCATGCAAAAAA TAGGCAACACTAAAG HPAG1_0182 187694 - 188503 + | hypothetical protein TERM 162 188516 - 188541 + F 71 -5.6 -4.67607 | opp_overlap 188516 188517, overlap 188517 TAAAGATTTTACAAA TTTAAAAGAG TCATCT CTCTTTTAAG TTTATTTCTTAAAAA TERM 163 188625 - 188600 - f 87 -9.9 -3.87994 | opp_overlap 188599 188619 AGCCACCGCTACAAA CTCCCTAAAAT TCGC ATTTTAAGGAG GCTTATGCTATAAAA HPAG1_0183 189275 - 189808 + | hypothetical protein HPAG1_0184 191322 - 189814 - | phospholipase D-family protein TERM 164 191076 - 191087 + g 76 -4.4 -5.12617 | TATAGATATAAGTTT GCAT GTCA ATGC TTTTTTGGCTCATTC sdhB 192081 - 191344 - | fumarate reductase iron-sulfur subunit HPAG1_0186 194218 - 192074 - | fumarate reductase flavoprotein subunit HPAG1_0187 194995 - 194228 - | fumarate reductase cytochrome b-556 subunit TERM 165 194511 - 194495 - G 70 -5.9 -4.46854 | overlap 194490 ATACAAAAGCCAAAA GTTTTGC GTT ACAAAAC GATAGCTTGAGCCAT tpiA 195209 - 195913 + | triosephosphate isomerase HPAG1_0189 195923 - 196756 + | enoyl-(acyl carrier protein) reductase lpxD 196756 - 197766 + | UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase TERM 166 197907 - 197889 - g 74 -6 -4.38712 | opp_overlap 197902, overlap 197891 197902 GGCATCCTGACAAAA TGGCTGAT CAA ATCAGCGA TGCGGTCTTGGATTA TERM 167 198151 - 198132 - g 73 -8.6 -3.73224 | opp_overlap 198125 GTATTGGCGAGCAAA GCCCTGAT ATTA ATCAAGGC GTGGATAGAGAAGAT TERM 168 198311 - 198288 - g 70 -3.2 -5.00616 | overlap 198293 198298 CTCTGGCTCAAAAAA GAAAAGACAA CACC TTGCCTTTTT TAAGGCCTGATGGCA TERM 169 198306 - 198293 - g 79 -3.1 -5.42198 | overlap 198288 198298 GCTCAAAAAAGAAAA GACAA CACC TTGCC TTTTTTAAGGCCTGA HPAG1_0191 197831 - 198988 + | S-adenosylmethionine synthetase TERM 170 199432 - 199443 + G 70 -3 -5.03314 | opp_overlap 199432 GAAAACGCGCACAAT GAAA TCGC TTTC TTTTTTGCCGCTAGG HPAG1_0192 199054 - 199467 + | nucleoside diphosphate kinase TERM 171 199757 - 199775 + G 70 -3.2 -4.84642 | overlap 199758 199760 199769 TTGATAATTTAGATG TTATTGAA TCT TTCAATGG TTTTATTGATTTGAG HPAG1_0193 199492 - 199848 + | hypothetical protein rpmF 199864 - 200010 + | 50S ribosomal protein L32 HPAG1_0195 200076 - 201098 + | putative glycerol-3-phosphate acyltransferase PlsX HPAG1_0196 201123 - 202115 + | 3-oxoacyl-(acyl carrier protein) synthase III HPAG1_0197 202082 - 202438 + | hypothetical protein TERM 172 202975 - 202989 + T 70 -4.3 -4.87626 | opp_overlap 202985 TTAAAGGAAATTACC GTTTG CTAAA CAAAC TTTTTGATATTAAAA TERM 173 203071 - 203056 - T 84 -6.2 -5.22006 | CCATTAGAACAAAAA CCAAAT TTTT ATTTGG AAAACTTGTGGTAAT HPAG1_0198 203447 - 203064 - | hypothetical protein HPAG1_0199 205164 - 203524 - | hypothetical protein TERM 174 204141 - 204152 + g 74 -4.4 -4.96501 | opp_overlap 204141 AGTGATTCTTAATTA CAGA GCCT TCTG TTTCTTTTTCTACAA HPAG1_0200 205787 - 205230 - | hypothetical protein HPAG1_0201 207228 - 205999 - | putative transposase OrfB TERM 175 206054 - 206076 + g 71 -4.8 -4.65916 | overlap 206057 CCGCTATCCCTTAGA GTTTTCACTG CAT CAGGGAATAC TTTTCTTAAAATGCC HPAG1_0202 207847 - 207215 - | putative transposase OrfA HPAG1_0203 208038 - 207844 - | hypothetical protein TERM 176 207923 - 207911 - G 73 -5.5 -4.48987 | opp_overlap 207911 207909 TCGCCAGAATGAAAA GGCAA AAC CTGCC TGATTTTATCTTTCA HPAG1_0204 208249 - 208031 - | hypothetical protein TERM 177 208099 - 208086 - G 70 -3.1 -4.99043 | TTCTTAGAAAGAAAA GCTAA CTCA TCAGC TTCTAAATCTCCCAA HPAG1_0205 208962 - 208297 - | hypothetical protein HPAG1_0206 209054 - 208950 - | hypothetical protein HPAG1_0207 209040 - 210281 + | ATP-binding protein TERM 178 210305 - 210290 - TR 71 -5.4 -4.63527 | opp_overlap 210290 210284 GCATTAGTTTAAAAA GGGCTT TAAA AAACCC TTTTAATCAATTGCT HPAG1_0208 211431 - 210295 - | lipopolysaccharide 1,2-glycosyltransferase TERM 179 210905 - 210893 - GTR 73 -7.7 -3.74224 | opp_overlap 210896 TCTAAATTAGGGAAA GCGTT GGC AACGC CGATAGTTTTTGCGT HPAG1_0209 211481 - 211362 - | lipopolysaccharide 1,2-glycosyltransferase HPAG1_0210 211636 - 212988 + | outer membrane protein HofA TERM 180 213325 - 213311 - g 83 -3.6 -5.65177 | ATAGCCAGAAAAAAA CCTTAA CGA TTAAAG ATAATGGTATAGGCA HPAG1_0211 213091 - 214956 + | heat shock protein 90 TERM 181 214959 - 214969 + T 79 -6.8 -4.64657 | opp_overlap 214967, overlap 214967 214967 GAAAGCGTTGTAAGG GGGT AAA ACCC TTTTTAGGGGTTTGA TERM 182 215096 - 215108 + T 71 -7.7 -3.56568 | opp_overlap 215096 215098 CATTGTAGGAAAAAA CCCTT TTT AAGGG TTTGAAAACTGCTTA TERM 183 215108 - 215096 - T 91 -7.7 -5.15634 | opp_overlap 215096, overlap 215098 CATTGTAGGAAAAAA CCCTT TTT AAGGG TTTGAAAACTGCTTA TERM 184 215278 - 215251 - T 70 -6.4 -4.31329 | gap 1, opp_overlap 215251 215251 215255, overlap 215252 215255 TTAAAAAGCGTAAAA GCCA-GCTAAACG CGG CGTTTAGCTTAAC TTCATTAAAATTAAA TERM 185 215255 - 215273 + T 89 -11.8 -3.23899 | opp_overlap 215255 215252 215251, overlap 215251 215251 AAAGCGTAAAAGCCA GCTAAACG CGG CGTTTAGC TTAACTTCATTAAAA TERM 186 215273 - 215255 - T 87 -11.8 -2.76693 | opp_overlap 215251 215251 215255, overlap 215252 215251 AAAGCGTAAAAGCCA GCTAAACG CGG CGTTTAGC TTAACTTCATTAAAA HPAG1_0212 216041 - 215289 - | cysteine-rich protein A TERM 187 216078 - 216065 - R 74 -3.9 -5.31275 | opp_overlap 216065 TCCTATTATAAAAAA TGTAA TCCT TTACA ATTATAATCAAATAT HPAG1_0213 217652 - 216501 - | succinyl-diaminopimelate desuccinylase HPAG1_0214 219527 - 217662 - | tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA TERM 188 219007 - 219024 + g 71 -6.3 -4.30576 | opp_overlap 218998, overlap 218997 TTAGAAGCGTTTTCC CCAAAGC GCCC GTTTTGG TTTTGGTGCTCGCCA TERM 189 219073 - 219083 + g 81 -5.4 -5.14477 | AAAAAAGTGCCTGTG GTGA TGA TCAC TTTTTTAGCTCTATA TERM 190 221008 - 221023 + G 77 -6 -4.60889 | opp_overlap 221007, overlap 221007 221018 AATCACTTCTAACAC CGCCAC CGCT GCGGCG TTTTTGCCGGTGATT HPAG1_0215 219623 - 221281 + | sodium-dependent transporter TERM 191 221620 - 221632 + G 72 -3.3 -5.16472 | TTTACCCTTTTTATA CCCGG GCG TTGGG TTTTTTGCACTTTTT HPAG1_0216 221294 - 222094 + | CDP-diacylglycerol synthetase TERM 192 222628 - 222616 - g 73 -6.9 -4.18494 | overlap 222617 TATCGCTATTCAAAA CGCGC AAA ACGCG CTCAAACACCCTAAT TERM 193 222950 - 222966 + G 70 -8.7 -3.32066 | CCCATTAGCATGGAG CGCTACA CTT TGTGGCG TTATAAAGACTTGTT HPAG1_0217 222095 - 223201 + | 1-deoxy-D-xylulose 5-phosphate reductoisomerase TERM 194 223414 - 223393 - gf 72 -3.1 -5.07567 | gap 1, opp_overlap 223402 TTAGAGGCTAAAAAA CTTCGTTCTC TTC AAGAA-GAAG CTTTATTCAACCATG HPAG1_0218 223252 - 223557 + | beta-1,4-N-acetylgalactosamyltransferase TERM 195 223974 - 223964 - g 74 -4 -5.06451 | opp_overlap 223964 TATGACGCTAAAAAA CTTT ATG AAAG TTTTTATATCCCTAA TERM 196 223964 - 223974 + G 71 -4 -4.99035 | opp_overlap 223964 TATGACGCTAAAAAA CTTT ATG AAAG TTTTTATATCCCTAA HPAG1_0219 223532 - 224392 + | hypothetical protein HPAG1_0220 224959 - 224408 - | hypothetical protein TERM 197 224789 - 224756 - G 75 -8.2 -3.98083 | gap 1, opp_overlap 224755, overlap 224759 GACCCAATGGACAAA CGA-CATGCCGCACA CTTTT TGCGCGTCATGATCG ATGAGTTCTAACGCA TERM 198 225067 - 225049 - H 71 -7.6 -3.4178 | opp_overlap 225052 225066, overlap 225052 AGCATGGTATTAGAA TAATCATT TTT AATGATTA AATAGCTATTTATTT HPAG1_0221 225083 - 225565 + | hypothetical protein TERM 199 226187 - 226172 - g 86 -4.6 -5.39721 | opp_overlap 226173, overlap 226173 CGATCACAGAAAAAA CCGCTC TAGT GAGCGT GATGTGGGCGAATAA TERM 200 226186 - 226173 - g 73 -8.1 -3.82748 | opp_overlap 226173, overlap 226172 GATCACAGAAAAAAC CGCTC TAGT GAGCG TGATGTGGGCGAATA HPAG1_0222 225733 - 226902 + | cysteine desulfurase HPAG1_0223 226924 - 227904 + | nifU-like protein HPAG1_0224 228065 - 228298 + | hypothetical protein TERM 201 228597 - 228585 - g 72 -3.3 -5.15117 | CAAAAGCGCAAAAAA GCGTT TCT ATCGC TGCAATTGAGCATGA TERM 202 228766 - 228740 - g 75 -8 -4.07687 | overlap 228723 228741 ACTCTGCTTTTAAAA GTGGCTTCTGGC TTA GCCAAAAACCAG CAAAAGGTTTTGTAT TERM 203 228765 - 228741 - g 81 -11.5 -3.04398 | overlap 228723 228740 CTCTGCTTTTAAAAG TGGCTTCTGGC TTA GCCAAAAACCA GCAAAAGGTTTTGTA TERM 204 229663 - 229679 + G 89 -9.5 -4.18018 | opp_overlap 229661 229660 229663 AGAAATGGAAAATTA TGGCTTT TTA AAAGCCA TTTTGCCTAAAAAAC TERM 205 229679 - 229663 - g 73 -9.5 -3.16695 | opp_overlap 229663, overlap 229661 229660 AGAAATGGAAAATTA TGGCTTT TTA AAAGCCA TTTTGCCTAAAAAAC HPAG1_0225 228392 - 229762 + | DNA repair protein RadA HPAG1_0226 229886 - 230965 + | bifunctional methionine sulfoxide reductase A/B protein TERM 206 230994 - 230981 - f 74 -9.5 -2.5664 | overlap 230980 GAGGTAATGACTAAG CCCCC TAAT GGGGG TTAAAGCGTTTGGTT TERM 207 231150 - 231168 + F 81 -4 -5.58051 | AAACTTTTTATTTTT TTAAAAAT GGG GTTTTTAA TTTTATTTTTTGTTT TERM 208 231260 - 231294 + G 77 -5.2 -4.90136 | overlap 231248 TAACTCTAAAGAAGC GCTTTTTAAGAG ATTATCGCTTG CTCTTAGAAAGC TTTTTGGTATTAATT HPAG1_0227 231156 - 231362 + | hypothetical protein HPAG1_0228 232172 - 231339 - | hypothetical protein TERM 209 231849 - 231837 - G 73 -7.7 -3.89524 | overlap 231823 AGCGTATTTGATAAA GGTGT AGC ACACC ACCACCACAAACACC TERM 210 232127 - 232110 - G 78 -4 -5.28683 | overlap 232111 ACCAATACCAAAAAA CCCGGC GGTAAT GCCGGT GAATAGCCCTACAAG HPAG1_0229 232450 - 232385 - | remnant of HopM TERM 211 232510 - 232526 + r 81 -2.9 -5.7946 | overlap 232512 GTTCAATGCCATGCT GAGCGGT GTG ATCGCTG TTTTTTTCTTAGGCC HPAG1_0230 234468 - 232492 - | outer membrane protein HopM TERM 212 233691 - 233731 + g 81 -11.9 -2.55253 | opp_overlap 233697, overlap 233697 233702 TAGTAGCGGCTTGTT GCAAAAGGTTTTCAGCGTC ATT GACGCTGCTAATCTTTAGC TGGATTGAGGTTGAT TERM 213 233697 - 233725 + g 70 -8.1 -3.68619 | opp_overlap 233697, overlap 233691 233702 CGGCTTGTTGCAAAA GGTTTTCAGCGTC ATT GACGCTGCTAATC TTTAGCTGGATTGAG TERM 214 233853 - 233878 + g 71 -4.8 -4.54727 | gap 1, opp_overlap 233857, overlap 233857 TATTTTTGGAGCTAT TTAAGGCAGGC ATCCC GCCT-CCTTGA TTTTGGTTTAAAGCG TERM 215 234638 - 234606 - H 76 -3.7 -5.33465 | opp_overlap 234617, overlap 234615 AAAAAAAAAAAACAA TTTTAAGTATTTTTT ACA ATAAAATATTTAAAA AAGCTTAACGCTAAG HPAG1_0231 234724 - 235881 + | hypothetical protein TERM 216 236082 - 236095 + T 71 -6.7 -4.02424 | CGTTATTCATTGAGA GCCAA AAAG TTGGC TTTGTCCTCATTAGT HPAG1_0232 237590 - 236130 - | outer membrane protein HopA TERM 217 237030 - 237005 - G 77 -6.1 -4.56775 | opp_overlap 237008, overlap 237008 AGGTGTTGCCAAAAA TATTGCATGCG TTCC CGCTTGCATTA ATGCCCCATGGTTTG TERM 218 237701 - 237721 + r 91 -3.3 -6.17292 | TTTTAATAAAATTGA GCGAAAATT AAG AAATTTTGC TTTTTTTTTGGATTT HPAG1_0233 238517 - 237786 - | 3-deoxy-manno-octulosonate cytidylyltransferase TERM 219 239070 - 239080 + G 70 -5.4 -4.3277 | opp_overlap 239070 TAACGCTGCAAATAA GGAT AAA ATCC TTTATATTGTCTCTG HPAG1_0234 238630 - 239427 + | hypothetical protein TERM 220 239570 - 239548 - g 71 -7 -3.96892 | AATGCTGATGACAAA CCCAAAGAGC AAA GCTCTCTAAG TCAAAGCGTTCAAAA HPAG1_0235 239443 - 240093 + | hypothetical protein TERM 221 240685 - 240695 + G 84 -6.8 -5.00616 | opp_overlap 240684 240682 240685 AATATTGAAGAAGAG CGCA CCA TGCG TTTTTTGCAAGACGC HPAG1_0236 240115 - 241287 + | hypothetical protein TERM 222 241662 - 241674 + G 71 -6.3 -4.21787 | GCTAAAGTGGGCGTT GTGTT TAA AACAC TTTTGGGGATTTTTT HPAG1_0237 241287 - 241817 + | hypothetical protein TERM 223 241919 - 241904 - T 91 -5.4 -5.85244 | AACCAAAATAAAAAA GCTTGC ATCA ACAAGC GATAGTTTCTCATAA TERM 224 242390 - 242378 - T 72 -3.5 -5.13741 | CTAACCTAACAAAAA TTTAT ACT ATAAA AACACGCTAACAAAC TERM 225 242453 - 242428 - T 70 -4.1 -5.11937 | overlap 242430 AACAACCGCAAAAAA CATTCAAAAAG TTTT CTTTTTGAAAA TAGACAAAACCCTAA TERM 226 242451 - 242430 - T 88 -8.9 -4.17355 | overlap 242428 CAACCGCAAAAAACA TTCAAAAAG TTTT CTTTTTGAA AATAGACAAAACCCT HPAG1_0238 243656 - 242589 - | cysteine-rich protein E TERM 227 242651 - 242670 + g 72 -3.6 -5.13648 | overlap 242652 CTAGCTTACAGCCCT TGTCATAA ATCA TTATGGCG TTTTCTTTATCTTTC HPAG1_0239 244115 - 243750 - | hypothetical protein hemC 245035 - 244115 - | porphobilinogen deaminase HPAG1_0241 246779 - 245046 - | prolyl-tRNA synthetase TERM 228 246000 - 245976 - G 70 -3.3 -5.00616 | opp_overlap 245978, overlap 245978 CTCTGTTTTAAAAAA CTCCGCCACGC TTT GCGCGCTGGTG GTATTAGGGGTAGGG hemA 248132 - 246783 - | glutamyl-tRNA reductase TERM 229 247002 - 247016 + g 80 -6.4 -4.7153 | opp_overlap 247002, overlap 246995 TTCTTTAGGCACATA GCGTTT TTT AAGCGC TTTTTGCAATTCTTT TERM 230 247523 - 247538 + g 91 -6.1 -5.38249 | GAGCCATCTCGCCAA GCCCT ATCACA AGGGC TTTTTTATCCTTAAT TERM 231 247870 - 247882 + g 74 -4.9 -4.72272 | ACGCTCATTTTTTTA TTTTG AGC CAAAA TTTTTAATAACGCGC HPAG1_0243 249055 - 248132 - | putative octaprenyl-diphosphate synthase HPAG1_0244 249466 - 249065 - | hypothetical protein HPAG1_0245 249785 - 249453 - | hypothetical protein TERM 232 249611 - 249641 + gr 72 -3.2 -5.01732 | opp_overlap 249611 249620, overlap 249631 TAAAAGTTTCCAAGA GAGCCAGAAGCTCT AAA AGCCTTTCTAGCTC TTTTTTAGAAAGCTT HPAG1_0246 250195 - 249758 - | neutrophil activating protein TERM 233 249884 - 249909 + gr 78 -6.9 -4.43208 | CTCTTTAAATTCTTT TTCTAGGTGTT TGTA ATCGCCTAGAA TTTCTTTAAAGATGT HPAG1_0247 251543 - 250398 - | histidine kinase sensor protein TERM 234 250616 - 250602 - G 70 -5.8 -4.46073 | opp_overlap 250610 CGTGAAGACAATAAA TTCATT TTG AATGAA CGCTTCAATCTTCAC TERM 235 251103 - 251125 + g 70 -2.7 -5.17488 | TTGCTTGCCTTGAAT GCTGTTTTG CTGGA CTAAATAGC TTTTATTTTCATGTT HPAG1_0248 251857 - 251540 - | hypothetical protein flgI 252882 - 251854 - | flagellar basal body P-ring protein TERM 236 251924 - 251939 + g 76 -3.2 -5.25803 | ATTGAAACCATCCCC TTAGCG CTCA CGCCAA TTTTTTGTAAGGCTT TERM 237 253645 - 253655 + G 70 -3.2 -5.00616 | overlap 253635 CCTCCCTAGCGAAGC GCAG ATT TTGC TTTTTTCAGCCACGA TERM 238 253902 - 253871 - g 74 -3.8 -5.14965 | gap 1, opp_overlap 253879 253880 ACGCGCACCAAAAAA GAAGCTGATGAATTG CAC CAATTCCTT-GCTTC TAAAAATTACAAAAG TERM 239 254463 - 254448 - g 85 -3.9 -5.60993 | opp_overlap 254459, overlap 254432 CCTCTCACAAAAAAA CGCCC CAGCAT GAGCG AGCGCGTTCTTTCAA HPAG1_0250 253067 - 254545 + | ATP-dependent RNA helicase TERM 240 254616 - 254604 - g 100 -6.3 -5.75538 | TTTAAAAAAGAAAAA TTCTC AAA GAGAA ACCCCCACGCCTAAT HPAG1_0251 254566 - 255654 + | hypothetical protein TERM 241 255841 - 255860 + G 74 -4.2 -5.08255 | ACAACAGCTTTTTTG GGCACGTT TTTG AGCATGCC TTTTGTTTTGAAGGT HPAG1_0252 255661 - 256200 + | hypothetical protein HPAG1_0253 257802 - 256252 - | oligopeptide permease ATPase protein TERM 242 256542 - 256523 - G 79 -10 -3.55563 | ATTTTAGGTTTTAAA GCAATCGC TCTA GCGATCGC CACCCTTTGGCGCTC HPAG1_0254 258834 - 257812 - | oligopeptide permease integral membrane protein TERM 243 258716 - 258701 - G 76 -6.8 -4.31293 | TTATAGATGAATAAA GGGCGA TCAT TCACCC ATAAGGGGGCTAAAA HPAG1_0255 259164 - 260621 + | outer membrane protein HopF TERM 244 261075 - 261065 - g 85 -6.8 -5.13741 | TGAAGCGAATAAAAA CGCT TAT AGCG TTCAAGCCTTGCAAG TERM 245 261303 - 261291 - g 83 -9.1 -4.08216 | TCAGTGTTTTTAAAA GGGCT TTT AGCCC AAATGCAGCTTTTTA HPAG1_0256 260631 - 262052 + | outer membrane protein HopG TERM 246 262069 - 262085 + F 81 -2.3 -5.94597 | overlap 262070 CTCTTTTTAGGGCTT ATAAAGA GAC TCTTTAC TTTTTTTTGGTATTC HPAG1_0257 262151 - 263386 + | adenylosuccinate synthetase TERM 247 263461 - 263448 - g 79 -6.7 -4.50259 | opp_overlap 263447 263448 AAAAATAGAGCAAAA GCTTG AAAG CAAGC GTTTAGAATTGCAAC HPAG1_0258 263383 - 263811 + | hypothetical protein TERM 248 264061 - 264049 - g 77 -4.9 -4.93595 | AGAAAAACTGAAAAA TTTAG CCG CTAAA GAAGAAGCCTTTAAA HPAG1_0259 263804 - 264475 + | hypothetical protein TERM 249 264754 - 264740 - g 70 -2.8 -5.03314 | opp_overlap 264746 GCTACGCGCAAAAAA GCCCTT TCC AAAAGC TATGGATATTGTTTG TERM 250 264886 - 264873 - g 83 -3.1 -5.60993 | gap 1 CGGTTTAGAAAAAAA CGCGCT AGA AGC-CG GGCTGTTAAAAGGGG HPAG1_0260 264472 - 265527 + | hypothetical protein xseA 265540 - 266802 + | exodeoxyribonuclease VII large subunit HPAG1_0262 267993 - 266821 - | type III adenine methyltransferase TERM 251 267552 - 267570 + g 74 -9 -3.61178 | overlap 267569 CATTCTTAATCGTTC GCATTAAA TCT TTTAATGC TTTAGCATAAATGGG HPAG1_0263 268444 - 267986 - | hypothetical protein TERM 252 269069 - 269053 - g 77 -10.9 -2.8806 | opp_overlap 269043 269052 269053, overlap 269043 AAATTCGTTCAGAGA GCGTTTC ACA GAAACGC CTTATTGGAAATTAA TERM 253 269053 - 269069 + G 77 -10.9 -2.78867 | opp_overlap 269043 269053, overlap 269043 269052 AAATTCGTTCAGAGA GCGTTTC ACA GAAACGC CTTATTGGAAATTAA HPAG1_0264 268586 - 269185 + | hypothetical protein TERM 254 269361 - 269373 + G 70 -2.7 -5.06735 | opp_overlap 269361, overlap 269361 269355 CGAGCGTTTTAGAGA CTTTT GAA AAAGG TTTTTATGATTTGTG TERM 255 269848 - 269836 - g 75 -5.5 -4.74103 | CGGCGAATCTAAAAA GCGCT TAA AGCAC CCAGCCCCATTCCCA HPAG1_0265 269297 - 270055 + | type II DNA modification enzyme TERM 256 270741 - 270721 - g 88 -2.5 -5.98675 | overlap 270724 CAGAAAAACAAAAAA TAACCCTAT TTT ATTGGGTGA GCCTGGAGTGGGGAA TERM 257 270738 - 270724 - g 71 -4.2 -4.97159 | overlap 270721 AAAAACAAAAAATAA CCCTAT TTT ATTGGG TGAGCCTGGAGTGGG TERM 258 271869 - 271853 - g 90 -8.7 -5.06414 | overlap 271866 GTGGGGCAAGAAAAA GCGATCA AAG CGATCGC TAAAGCGATTAAAAG HPAG1_0266 270128 - 272698 + | ATP-dependent protease binding subunit/heat shock protein TERM 259 273054 - 273065 + G 76 -4.4 -5.01042 | ATTATATCGCTGGGG GGAT TGTG ATCC TTTTTGGTTTGCATT TERM 260 273295 - 273309 + G 91 -6.4 -5.5112 | GGTGGTGTTTGTAAT GGGATT GGC GATCCC TTTTTTATTAGTGGC HPAG1_0267 272753 - 273475 + | cytochrome c biogenesis protein TERM 261 273544 - 273533 - g 71 -7.2 -3.90762 | overlap 273531 GAGGTTTTAAAAAGA GCGG ATAT CCGC TTAAAAGATTCCCTC HPAG1_0268 273485 - 274621 + | dihydroorotase HPAG1_0269 274606 - 275835 + | chlorohydrolase HPAG1_0270 275896 - 276138 + | hypothetical protein HPAG1_0271 276148 - 277461 + | putative ATP-binding protein HPAG1_0272 277500 - 278153 + | hypothetical protein TERM 262 278540 - 278552 + G 87 -3.4 -5.79595 | opp_overlap 278520 278540 TCAAGCGTTTTAAAA TCCA GGATG TGGA TTTTTTGTTTTCGCC TERM 263 278630 - 278646 + G 76 -2.3 -5.47846 | overlap 278632 CGTTGTTGTATTTGC TTTTGGA GCG TTCAAGA TTTTATTTTTTGATT HPAG1_0273 278146 - 279129 + | hypothetical protein HPAG1_0274 279119 - 279652 + | hypothetical protein TERM 264 279845 - 279830 - g 79 -3.2 -5.51165 | AAAATCGTAAAAAAA GCGTTT TAGA ATACGC GCAAAGGCATTTTGA HPAG1_0275 279649 - 280188 + | hypothetical protein HPAG1_0276 280201 - 280602 + | hypothetical protein HPAG1_0277 280639 - 281931 + | ATP-dependent nuclease TERM 265 282155 - 282167 + G 71 -6.9 -4.06903 | ATTATACGAAATAGG CGCGC CAA GCGTG TTTGATTTAGAAGTT HPAG1_0278 281919 - 282464 + | hypothetical protein HPAG1_0279 282535 - 282786 + | ferrodoxin HPAG1_0280 282796 - 284250 + | guanosine pentaphosphate phosphohydrolase HPAG1_0281 284247 - 285269 + | lipopolysaccharide heptosyltransferase-1 HPAG1_0282 285266 - 286252 + | lipid A biosynthesis lauroyl acyltransferase tgt 287466 - 286351 - | queuine tRNA-ribosyltransferase TERM 266 286469 - 286457 - G 76 -3.4 -5.27938 | AGCTCTAAATAAAAA TGCA AATTG TGCA AGCTGGCTAAACGGG TERM 267 288329 - 288317 - g 73 -7.7 -3.83324 | opp_overlap 288317 GCACAAACATTTAAA GAGCT ATA AGCTC TACATTCAGGTTTTA HPAG1_0284 287517 - 288959 + | hypothetical protein TERM 268 289462 - 289448 - g 73 -5.7 -4.57073 | opp_overlap 289447, overlap 289450 TAGTTTTTTTAAAAA CCCTT GAAAA AAGGG AATTTCAAGCAGGGG aroB 288964 - 289995 + | 3-dehydroquinate synthase TERM 269 290363 - 290379 + G 71 -5.1 -4.56702 | TATCGCTAACCCTAT TGCGATC ATT GATGGCA TTTCTTTCATTAAAA TERM 270 290436 - 290457 + G 73 -6.7 -4.18018 | opp_overlap 290434 290456, overlap 290434 AAAAATAACCAAACT GCTTTAGAA GAAG TTTTAAAGC TTTTAGATCAAAAAC HPAG1_0286 289986 - 291557 + | hypothetical protein TERM 271 291861 - 291882 + G 89 -4.5 -5.64274 | AAGAAAAGATTAACG CGCTTTT ACAAGAAA AAAAGCG TTTTTTTATAGATGA HPAG1_0287 291554 - 292810 + | hypothetical protein TERM 272 293543 - 293523 - g 100 -12.7 -5.00616 | GCTGGGGCTAAAAAA GTGCATGAA CTT TTCATGCAC GCTAAAAGGCATGCC HPAG1_0288 292797 - 294449 + | cell division protein TERM 273 294736 - 294750 + G 73 -7.1 -4.07568 | AGAAGTGGGCTTGAG CGCTC AATTG GAGCG TTTTAAAAAAGAGGG TERM 274 294812 - 294823 + G 70 -3 -5.06414 | opp_overlap 294803, overlap 294788 TACAAATATAGTGAT TCTA TAAT TAGA TTTTTATTAGAAAAA HPAG1_0289 294452 - 294970 + | hypothetical protein TERM 275 295363 - 295325 - g 82 -8.1 -4.64657 | gap 1, opp_overlap 295337, overlap 295315 TTAAACGCTCAAAAA GCGGGCGAAGCC-GCACT CCAA AGCGCTGAATTTGCCCGC TCGCACGCTCAAAGC HPAG1_0290 294983 - 295456 + | hypothetical protein TERM 276 299292 - 299317 + G 79 -5.5 -4.83615 | overlap 299294 GGCGGTAACCCTAAT TTCAGTTTCAA CGCT TTGAATCTGGA TTTTTCTAACAGCTC TERM 277 299978 - 299966 - g 70 -7.7 -3.70919 | opp_overlap 299965 CTTAAACCCTAACAA CAGCA GCG TGCTG GATTTGAAAAACAGC TERM 278 303151 - 303137 - g 70 -2.8 -5.09895 | overlap 303138 GATTTATTTAAAAAA CCACTC TTT GAATGA AATCTTAGGCGTAAC HPAG1_0291 295524 - 304220 + | putative vacuolating cytotoxin (VacA)-like protein TERM 279 304314 - 304344 + G 75 -2.6 -5.1925 | overlap 304315 304343 ACAAAACCCCTTTTT ACCTCTATGATTTT GAC AAAATCAAACAGGC TTTTTTGAATTATAA HPAG1_0292 304268 - 305485 + | diaminopimelate decarboxylase HPAG1_0293 305490 - 305780 + | hypothetical protein HPAG1_0294 305793 - 306665 + | hypothetical protein TERM 280 307554 - 307542 - g 74 -4.7 -4.89393 | opp_overlap 307542 307542 GAAAGTTTAGAAAAA CGCCC TAG GGGGG TGTATTGCGGGGCGA HPAG1_0295 306666 - 308345 + | para-aminobenzoate synthetase amiE 308534 - 309553 + | acylamide amidohydrolase flgL 312121 - 309635 - | flagellar hook-associated protein FlgL TERM 281 311267 - 311296 + g 83 -10.9 -3.75461 | overlap 311255 AGTGTTCCCGTAAGC GTGAGCGATTT TATCCAAC AAATCGCTCAC TTTAGTCGCGCTTTC rplU 312354 - 312668 + | 50S ribosomal protein L21 rpmA 312683 - 312949 + | 50S ribosomal protein L27 HPAG1_0300 313066 - 314715 + | periplasmic dipeptide-binding protein HPAG1_0301 314726 - 315730 + | dipeptide permease protein HPAG1_0302 315730 - 316587 + | dipeptide permease protein HPAG1_0303 316599 - 317462 + | dipeptide ABC transporter HPAG1_0304 317459 - 318265 + | dipeptide ABC transporter obgE 318284 - 319366 + | GTPase ObgE HPAG1_0306 319408 - 320403 + | hypothetical protein TERM 282 320839 - 320827 - g 74 -4.8 -4.6644 | AAGATAGTTTAAAAA CCCT TTTAG AGGG AGCGAGCGCGAGTAT HPAG1_0307 320649 - 321203 + | hypothetical protein TERM 283 322262 - 322226 - g 76 -4.6 -5.055 | gap 2, overlap 322258 TCAAGGCTTAAAAAA GAGCG-CTC-AAAGCTAT AAC ATCGCTTTAGAAACGCTC AACAGAGGGAGCATG HPAG1_0308 321213 - 322505 + | glutamate-1-semialdehyde aminotransferase HPAG1_0309 322510 - 322773 + | hypothetical protein HPAG1_0310 322789 - 323193 + | hypothetical protein HPAG1_0311 323277 - 324155 + | hypothetical protein TERM 284 324987 - 324974 - g 70 -8.1 -3.78778 | opp_overlap 324973 TGAGCATATCAACAA GCACG AGGG CGTGC GTTGGGTAACATTCA HPAG1_0312 324168 - 325049 + | hypothetical protein HPAG1_0313 325795 - 325103 - | type II restriction enzyme HPAG1_0314 326915 - 325806 - | DNA methylase TERM 285 327171 - 327161 - g 73 -6.8 -4.28774 | CCAGGGAACGCAAAA GAGC GCG GCTC AAGCGAGTGGGATTG HPAG1_0315 327010 - 327396 + | hypothetical protein TERM 286 327665 - 327636 - g 73 -7.1 -4.09685 | gap 1 GTGGAGTCTCTAAAA GCCGCGCTCAATAA CTA TGAATG-GCGCGGC GAAATTTTAAAGCGC TERM 287 328308 - 328327 + G 80 -8 -4.4017 | opp_overlap 328301 328307 328308, overlap 328301 GAAAAAATCTTAAAT TCCTTAAA GGGT TTTAAGGA TTTTCTCGGCATTAA HPAG1_0316 327396 - 328361 + | ATP/GTP binding protein TERM 288 328339 - 328361 + T 72 -3.4 -5.28414 | opp_overlap 328343, overlap 328343 AGGATTTTCTCGGCA TTAAGGGTTT TGA AACCCCATAA TTTTTCTATTTATTG HPAG1_0317 329512 - 328367 - | nitrite extrusion protein HPAG1_0318 330531 - 330274 - | hypothetical protein HPAG1_0319 330652 - 330524 - | hypothetical protein TERM 289 330862 - 330845 - R 77 -4.3 -5.14563 | TCTGTTAGTAAAAAA TTTTAAA AAAG TTTAAAA GAATAAAAGTTTTGT TERM 290 331222 - 331207 - R 80 -5.4 -5.20328 | CCCCAAAAAAACAAA GGGTTC AAAA AAACCC CCAAAAAAAAGAGGA TERM 291 331286 - 331245 - R 74 -8.9 -3.12884 | gap 1, overlap 331259 AAAGAGGATTTAAGA GAGGGGGTTCAAAAGAAAAA AGA TTTTTCATC-AAACCCCCCC CAAAAAAAGAATTTA HPAG1_0320 333582 - 331459 - | outer membrane protein TERM 292 332436 - 332468 + g 70 -2.7 -5.08011 | opp_overlap 332434 332436 332437, overlap 332437 GCACTTCATAACACA CCCCTAAAGAGTCTG ATA CAAAGTTTTTAGGGA TTTTTTCAAAGTTTT TERM 293 333837 - 333850 + r 78 -9.5 -3.35679 | opp_overlap 333828, overlap 333828 AAAAATCGCTCTTTT GGGGC GTTT GCCCC TTATGGGTGAGAAAA HPAG1_0321 334622 - 333867 - | hypothetical protein argS 336310 - 334685 - | arginyl-tRNA synthetase TERM 294 334851 - 334866 + g 72 -3.2 -5.00884 | overlap 334853 TCTGAGGCGAGAGTT TTTGCG TATT CGCACA TTTTTTGCAAGCCGT TERM 295 334968 - 334984 + g 71 -7.3 -3.90744 | opp_overlap 334968 334981 TTTAAATTTTTTAAA GGGGTTT GCA AAACCTC TTCTTTAGAAAAGGG HPAG1_0323 336552 - 336313 - | sec-independent protein translocase protein gmk 337243 - 336623 - | guanylate kinase TERM 296 336894 - 336908 + g 71 -5 -4.61231 | ATAAACACAGAGCAT GCGTTA GGG TAATGC TTTTTAAGGATCTCA HPAG1_0325 338660 - 337236 - | poly E-rich protein TERM 297 338397 - 338415 + g 74 -4.4 -4.87665 | opp_overlap 338385 338397, overlap 338381 AAAGCCCTCTAAGAA GGGCTGCG CTT CATGGCCC TTTTTATACATGCAC TERM 298 338449 - 338459 + g 73 -5.4 -4.48987 | CTGTTTTTATTTTGA GAGA TGA TCTC TTTTAATTCTAGCCA HPAG1_0326 338802 - 339344 + | membrane bound endonuclease HPAG1_0327 340117 - 339353 - | outer membrane protein HorC TERM 299 340008 - 340024 + g 79 -8.7 -3.97674 | opp_overlap 340011 AAATTTTTTGTCCAA GAAGGCG CTG CGCTTTC TTCTTTAGCTACTAA flgH 340220 - 340933 + | flagellar basal body L-ring protein TERM 300 340998 - 341019 + G 72 -3.1 -5.08824 | opp_overlap 340998 341013 GTTCCAGTAAAAGAA TCAAGAATA AAAA TATTATTGA TTTTTTCAATAAACC TERM 301 341304 - 341290 - g 90 -5 -5.61596 | opp_overlap 341290 ATTTTTACAAAAAAA GCATTT AAA AAACGC TTTTGAAACTTTAAA HPAG1_0329 340952 - 341641 + | CMP-N-acetylneuraminic acid synthetase TERM 302 342102 - 342092 - g 72 -3.2 -5.1675 | GGAGCGAGCAAAAAA CGCT CAA AACG CTCAAAGAGATAGTC HPAG1_0330 341632 - 342507 + | CMP-N-acetylneuraminic acid synthetase TERM 303 342777 - 342793 + GT 79 -5.1 -5.02074 | opp_overlap 342791 AAGCATGGGTATTTG GGGATTT ATA AAAACCC TTTTTTGAAAAATGG TERM 304 342809 - 342791 - gT 82 -6 -4.87665 | opp_overlap 342777 GGGGATTTATAAAAA CCCTTTTT TGA AAAATGGG GGAGAAACTATTTTA lpxK 343917 - 342979 - | tetraacyldisaccharide 4'-kinase HPAG1_0331 342504 - 343046 + | flagellar biosynthesis protein G HPAG1_0333 344696 - 343914 - | NH(3)-dependent NAD+ synthetase TERM 305 344613 - 344627 + g 85 -2.8 -5.81032 | opp_overlap 344613 344615, overlap 344615 ACTCAGCCCGTAAAC GACTTT TTT AAAGCC TTTTTTTTGAACTTC TERM 306 345791 - 345780 - g 70 -3 -5.10497 | AACGCATGCAAAAAA TCTT AAAA AAGA TTCAAAACGGCTCAT HPAG1_0334 344945 - 345937 + | ketol-acid reductoisomerase TERM 307 346200 - 346211 + G 70 -3 -5.0133 | opp_overlap 346200 346206 CACGGATAAAAAGAC GAAA AACC TTTC TTTTTTAGCGGCCTC TERM 308 346237 - 346206 - g 70 -3 -5.02231 | opp_overlap 346200, overlap 346200 TAAAAAGACGAAAAA CCTTTCTTTTTTAG CGGC CTCACAAAGTAAGG ATAAAAATATTTTAG HPAG1_0335 345961 - 346767 + | cell division inhibitor minE 346764 - 346997 + | cell division topological specificity factor MinE TERM 309 347500 - 347484 - g 84 -7.9 -4.67011 | AAGCGGATTTAAAAA GCGGCTC TAT GAGCAGC GCGAGATTAGCCCAA HPAG1_0337 347009 - 347809 + | DNA processing chain A TERM 310 348127 - 348117 - g 72 -3.2 -5.06414 | TTTGGGTAAGAAAAA CAAG TGG CTCG CTATTAAAGACGGCC HPAG1_0338 347806 - 348210 + | Holliday junction resolvase-like protein HPAG1_0339 348318 - 348908 + | cysteine-rich protein H HPAG1_0340 349095 - 349433 + | hypothetical protein HPAG1_0341 349417 - 349977 + | hypothetical protein HPAG1_0342 350961 - 350080 - | hypothetical protein TERM 311 350189 - 350203 + g 75 -10 -3.17901 | opp_overlap 350186 AGCATGAGTAAAGGG GCGTGA TTT TCACGC TTCAATTGAAGGTAT HPAG1_0343 352511 - 350961 - | single-stranded-DNA specific exonuclease TERM 312 351783 - 351797 + g 74 -6.4 -4.386 | opp_overlap 351756 351779, overlap 351756 GAAAGAAATATCGCT CGCTTT TAA AGAGCG TTTTCTAAAAACTTC TERM 313 352018 - 352008 - G 72 -3.2 -5.03227 | ATAGCACAAATAAAA CGCT ACC AACG CCCCGCACACTTCCT TERM 314 352216 - 352226 + g 70 -2.6 -5.03314 | overlap 352215 AAAGGGGCGTGGTGT TTTT CTA AAAA TTTTTTAGAAATCCC HPAG1_0344 354137 - 352521 - | CTP synthetase TERM 315 352849 - 352862 + g 70 -3.1 -4.86773 | overlap 352857 CCCAATGGCGAATTA TAGGT ACGC ACCTG TTTTTGGTGGTTTTG TERM 316 354813 - 354824 + G 78 -7.2 -4.4448 | overlap 354792 GCGCTAATTTCCCTA GCGC TATC GCGC TTTCTTTAGCCCTTT HPAG1_0345 354395 - 355057 + | hypothetical protein TERM 317 356020 - 356010 - g 100 -3.2 -6.17268 | TTAGAAGAAAAAAAA GAAG GCG CTCC TAAAAAACAAGTCGG fliF 355101 - 356804 + | flagellar MS-ring protein fliG 356822 - 357853 + | flagellar motor switch protein G TERM 318 358460 - 358474 + G 70 -8.6 -3.3334 | opp_overlap 358457 358460 CCCTTATTTAAACGA GCGTTT GCA AAACGC TTCTAAAATCAAATT fliH 357840 - 358616 + | flagellar assembly protein H TERM 319 359293 - 359305 + G 72 -3.3 -5.03145 | ATCTTTCAAGCTCAT CACCC CGG GCGTG TTTTTTGAAGAATTG TERM 320 360187 - 360222 + G 73 -8.4 -3.6608 | opp_overlap 360208 CATAGAGTGCGCTCT TTTGGATCTTAGGTTT TTAA AGCCCTTAGATCCAAA TTTAAGTGCGATCAT HPAG1_0349 358613 - 360469 + | 1-deoxy-D-xylulose-5-phosphate synthase TERM 321 360515 - 360478 - g 70 -2.9 -5.16132 | gap 1 GAGATGAAAACAAAA GCGCCAATGAAAAATATC CGC AAT-TTTTCCATTATCGC TCACATTGACCATGG HPAG1_0350 360466 - 362274 + | GTP-binding protein LepA TERM 322 362328 - 362306 - g 79 -8.6 -4.09656 | opp_overlap 362324, overlap 362298 GGCAAAACATAAGAA CTATGAAATT TTA AATCTCATAG GCTATGCTTTGGCAA HPAG1_0351 362289 - 362978 + | hypothetical protein HPAG1_0352 362989 - 363285 + | hypothetical protein HPAG1_0353 363400 - 363326 - | hypothetical protein HPAG1_0354 363538 - 363750 + | hypothetical protein HPAG1_0355 364777 - 363968 - | flagellar basal-body rod protein HPAG1_0356 366112 - 364832 - | alpha-ketoglutarate permease TERM 323 365921 - 365900 - G 73 -2.1 -5.18357 | overlap 365904 CAATTTACCAAAAAA CAAACTCCC CAAA GGGCGCATG AAAAACCCTAGCATA TERM 324 365917 - 365904 - G 74 -3.7 -5.0917 | overlap 365900 TTACCAAAAAACAAA CTCCC CAAA GGGCG CATGAAAAACCCTAG HPAG1_0357 368907 - 366295 - | cell division protein TERM 325 368343 - 368361 + gr 82 -3.8 -5.44119 | overlap 368343 TTTGGATATCTGATG GGGTGTTT TCA AAACCCTC TTTTTTTGGGCTAAA HPAG1_0358 371210 - 368877 - | hypothetical protein TERM 326 368918 - 368932 + gr 88 -7.2 -5.03314 | opp_overlap 368917 368918 AGCAATATTCACAAT CTTTAG CCT CTAAAG TTTTTTCAAAATCAA TERM 327 369307 - 369325 + gr 83 -6.8 -4.74103 | GTTTCAAAGCTTTTT TCAAGATC AAG GATTTTGA TTTTTGCCTTAAAGC TERM 328 370136 - 370154 + gr 76 -3.1 -5.27938 | gap 1, opp_overlap 370136, overlap 370130 GCATGATTTGAGAAT GCGCTTCT TTTA AGG-GCGC TTTTTCTTTAGAGCT TERM 329 370872 - 370862 - GR 74 -6.8 -4.30719 | opp_overlap 370862 TGTCTTTAGAAGAAA GCTC ATT GAGC TTGATACAAGCAGAA TERM 330 371179 - 371195 + gr 70 -3.1 -4.92314 | overlap 371180 371188 AAAACAAACAGGGGG TTTTTTT GTG AAAAAAG TTTTTCTAAGTTCAT TERM 331 371225 - 371263 + r 71 -5.3 -4.58685 | TGCGTTGAGTAATCT TTTAGCTTGAGCGGTGA TGTTT TCAACGCTGAAGCCGAA TTTTTCAAAGAGTTT HPAG1_0359 373135 - 371207 - | transketolase TERM 332 371648 - 371632 - G 71 -6.5 -4.30995 | opp_overlap 371640 371643, overlap 371635 GGCGCGATAAAATAA GAGCGCT AGG AGCGTTC AAACTTAACGCTACT TERM 333 372244 - 372257 + g 74 -3.9 -5.06451 | TAACTTTCACTTCTT CAAAA TGCA TTTTG TTTTTTGGGCTAATG HPAG1_0360 374021 - 373179 - | bifunctional riboflavin kinase/FMN adenylyltransferase TERM 334 373943 - 373931 - GR 77 -6.2 -4.59853 | TTAATTCTTTAAAAA GGGC TTGAT GCCC TAAATGCAAGCCGTC HPAG1_0361 374694 - 373987 - | hemolysin TERM 335 374561 - 374583 + gr 78 -9.2 -3.53091 | opp_overlap 374582 AGTTCAATTTGATCA CCCTCTTTAA TGA TAAAAGAGGG TTTAGAAACCACCAT HPAG1_0362 375209 - 374694 - | hypothetical protein TERM 336 375187 - 375177 - G 79 -3.2 -5.47964 | ACAAAAGAATAAAAA CACC AGA AGTG TTGAGAGATTTTTCA TERM 337 375601 - 375622 + G 71 -6.5 -4.28774 | opp_overlap 375600 ACGCTATCATCACAC GGCATGCTT TTTC AAGCGCGCC TTTTAAATTAGCTGA pyrB 375276 - 376199 + | aspartate carbamoyltransferase catalytic subunit TERM 338 376512 - 376526 + G 70 -2.9 -5.06103 | TGAAAAATAGCACGC CTTTA AAGAA TAAAG TTTTTTGCAGGTTAT HPAG1_0364 376496 - 377935 + | outer membrane protein HofB TERM 339 378067 - 378089 + G 75 -2.8 -5.33124 | opp_overlap 378068, overlap 378068 TAAATATCTTAAAGA GCATTATAAA AGT TTTATAGTGG TTTTATTTTCTTCTT TERM 340 379273 - 379285 + G 79 -5.5 -4.85782 | AAAGATTAGCGTTGT CACTC AAA GGGTG TTTATTTTTAACGGG HPAG1_0365 378026 - 379681 + | multidrug resistance protein TERM 341 380273 - 380262 - g 70 -5.8 -4.37886 | GGAGGGTTTAGAAAA GCGT TTGA ACGC TATAGAAAATGCAGA HPAG1_0366 379675 - 380298 + | hypothetical protein TERM 342 380435 - 380449 + G 70 -2.8 -5.1615 | overlap 380436 TGCTTTTAAAATTGT TGTCAA TTC TTGGCG TTTTTTCCATGTTAG HPAG1_0367 380302 - 380871 + | hypothetical protein TERM 343 381910 - 381888 - g 72 -3.6 -5.03314 | GTTATTGTTAAAAAA TATTATTGAT TTT ATTAATAATA ACAAAGATGGTAATT HPAG1_0368 381004 - 382116 + | hypothetical protein HPAG1_0369 382139 - 382822 + | hypothetical protein TERM 344 383667 - 383681 + G 77 -4.9 -4.87786 | CCATCACCGCCTTAA GCGTG TTTAT CGCGC TTTTTATCGGGTTGA HPAG1_0370 382880 - 383875 + | high affinity nickel transport protein HPAG1_0371 384400 - 383879 - | hypothetical protein TERM 345 384475 - 384485 + H 71 -5.4 -4.72333 | opp_overlap 384474 384475 AACTTTAAAAAACAC CCTT AAA AAGG TTTTTAGGTATAATT TERM 346 385126 - 385114 - g 70 -2.6 -5.1101 | overlap 385116 385117 GTATCATTTAAAAAA CACG CACAC CGCG CAAGGCGATACAGAA HPAG1_0372 384536 - 385852 + | hypothetical protein HPAG1_0373 386404 - 386024 - | hypothetical protein HPAG1_0374 386703 - 386503 - | copper ion binding protein HPAG1_0375 388941 - 386704 - | copper-transporting ATPase TERM 347 387480 - 387492 + g 76 -9.1 -3.68261 | overlap 387486 TCATTTCTTTTAAGG GAGCG TTA CGCTC TTTGGCGTATTCTAC TERM 348 387877 - 387865 - G 75 -7.7 -4.02334 | overlap 387875 GAGCCACACCACAAA CGCTA AAA TAGCG ATAGAAATCACGCTT TERM 349 388948 - 388966 + r 76 -6.2 -4.66833 | TTCTTTCATGCACTT TTATTTTT ATT AAAAATAA TTTTTACCATTAAAA HPAG1_0376 389651 - 388938 - | phosphatidylserine synthase HPAG1_0377 389895 - 389641 - | hypothetical protein TERM 350 389774 - 389755 - G 80 -2.1 -5.68039 | opp_overlap 389757, overlap 389757 389770 AAACTCACAAAAAAA GAGCGTT AGAGCA AACGCTT TATAACGCTGTTGAT HPAG1_0378 391796 - 389898 - | cell division protein prmA 392794 - 391805 - | ribosomal protein L11 methyltransferase TERM 351 392745 - 392725 - G 71 -6.9 -4.07568 | overlap 392729 GCGTGGTGTCTAAAA GAAAGCTCT CAA AAAGCTCTC GCTCCTTAGGGAAGA HPAG1_0380 393169 - 392795 - | chemotaxis protein TERM 352 393316 - 393334 + H 74 -7.4 -4.06419 | overlap 393319 ATCATTGGCTAAATG GAGCGTTC AAT GAGCGTTC TTATTTGTAAAAAAA HPAG1_0381 393464 - 394066 + | outer membrane protein HorD HPAG1_0382 394605 - 394198 - | hypothetical protein HPAG1_0383 394838 - 394608 - | hypothetical protein gidB 395368 - 394832 - | glucose-inhibited division protein B queA 396402 - 395365 - | S-adenosylmethionine:tRNA ribosyltransferase-isomerase HPAG1_0386 397125 - 396403 - | hypothetical protein TERM 353 396585 - 396569 - G 75 -9.5 -3.32405 | opp_overlap 396569, overlap 396559 396567 AAAATCACTACAATA GCGTATT TGA AATACGC TTTCAAGCTCGCATC TERM 354 396569 - 396585 + g 77 -9.5 -3.57462 | opp_overlap 396559 396567 396569 AAAATCACTACAATA GCGTATT TGA AATACGC TTTCAAGCTCGCATC HPAG1_0387 397600 - 397118 - | sec-independent translocase ruvB 398678 - 397668 - | Holliday junction DNA helicase B TERM 355 398389 - 398404 + g 79 -3.2 -5.39721 | overlap 398393 398398 AAATTCGTCAAAATG GCGG CCAAATCA CCGC TTTTTTCTATCATGG TERM 356 398704 - 398715 + r 74 -5.8 -4.63527 | CTTTCTAATTCGTTA GGGA AGTT TCCC TTTTTCACATCATCA panB 399491 - 398679 - | 3-methyl-2-oxobutanoate hydroxymethyltransferase TERM 357 398864 - 398884 + g 79 -5.4 -4.86862 | CGCAATCTTTACCGC TCCCTATG CCGAT CGTGGGGA TTTTGATTTTTTGCG HPAG1_0390 399640 - 400362 + | hypothetical protein TERM 358 401034 - 401059 + G 70 -8.4 -3.28001 | gap 1 AGATTAGAGGGTATT CAC-AGCCCAA CGCCT TTGGGCTAGTG TTAAATTTAGGGGTG HPAG1_0391 400340 - 401209 + | hypothetical protein TERM 359 401334 - 401324 - g 75 -2.6 -5.2422 | AATTAGACGAAAAAA TAAA CCA TTTA AAGCAACAGCTCACC HPAG1_0392 401239 - 402162 + | hypothetical protein HPAG1_0393 402172 - 403494 + | hypothetical protein TERM 360 404000 - 403987 - gf 70 -2.5 -5.07652 | TTTTTCAAAATAAAA TTTTA TCTC TAAAA GAGGTTGAACGGCTT minC 403431 - 404084 + | septum formation inhibitor lpxC 404081 - 404968 + | UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase HPAG1_0396 404990 - 405463 + | hypothetical protein TERM 361 406207 - 406223 + GF 73 -8 -3.55444 | TACCCCGTGTTGTTT GCGATC CAAAA GATCGC TTTAGAAAATAACGC HPAG1_0397 405517 - 406398 + | homoserine kinase HPAG1_0398 406370 - 406639 + | hypothetical protein infB 406636 - 409470 + | translation initiation factor IF-2 rbfA 409470 - 409805 + | ribosome-binding factor A HPAG1_0401 409798 - 410238 + | hypothetical protein HPAG1_0402 412334 - 410346 - | acetyl-CoA synthetase TERM 362 410936 - 410946 + g 72 -4.6 -4.72007 | TGCATAAAAACCCTT GCTC TCC GGGC TTTGTTTTGGTGCCG TERM 363 412629 - 412650 + G 76 -2.3 -5.4588 | AACCTTAAAGAAAAT CTCTCAATA CGCT TATTTAGGG TTTTTTATCCTTTTG TERM 364 413567 - 413534 - g 93 -13.9 -2.99449 | opp_overlap 413530, overlap 413529 GTTTATACAAGCACA GCCCCACCACTCAAA TTTA TGTGAGCAGTGGGGC AGGGTATTGGGGGAT HPAG1_0403 412537 - 413649 + | hypothetical protein TERM 365 414594 - 414571 - g 76 -4.6 -5.03747 | gap 1, opp_overlap 414578, overlap 414580 AAATCCGCCAAAAAA TGGATAAACCC TTG GGGATT-TCCA CGGTTGAAACCGTGA HPAG1_0404 413988 - 414659 + | putative transcriptional regulator TERM 366 414934 - 414910 - T 74 -9.5 -2.53125 | opp_overlap 414914, overlap 414909 414908 414914 ATTGGTCATAAAACT TAAAGAATGCT AAA AACATTCTTTA CAATCAAATGATTAA TERM 367 415114 - 415140 + T 84 -6.1 -5.17507 | gap 1, opp_overlap 415120, overlap 415114 415120 ATTTTTAAACCTTAT C-AAAAAGAGTT TTTA AACTCTTTTTAG TTTTTGTTGGCTTTT TERM 368 415133 - 415120 - T 74 -5.3 -4.75404 | opp_overlap 415114 415114 415120 AAACCTTATCAAAAA GAGTT TTTA AACTC TTTTTAGTTTTTGTT TERM 369 415120 - 415133 + T 80 -5.3 -5.24003 | opp_overlap 415120, overlap 415114 415114 AAACCTTATCAAAAA GAGTT TTTA AACTC TTTTTAGTTTTTGTT TERM 370 415182 - 415197 + T 76 -6.2 -4.61162 | TGGTTTTAAGCGTTA TTGAAG ATTT CTTCAA TTTGTTCTTTAATAT HPAG1_0405 416218 - 415172 - | hypothetical protein TERM 371 415545 - 415560 + g 89 -4.6 -5.58209 | GTTTCTGCATCAGGG TCGCCC CCCA GAGCGA TTTTTTTAAGTTTGA TERM 372 416163 - 416150 - G 74 -3.9 -5.03314 | GGTATTTTTAAAAAA TTGTT TTGA AACAA GCTGGCATGCATAGC flhA 418447 - 416246 - | flagellar biosynthesis protein FlhA TERM 373 418353 - 418333 - G 87 -12.7 -3.42574 | overlap 418347 GTAACGGCACGATAA TGATCGCTA AAA TAGCGATCA CAAAGACCACAAGGG rpsO 418585 - 418857 + | 30S ribosomal protein S15 TERM 374 419466 - 419452 - g 79 -5.8 -4.93365 | opp_overlap 419451 TCGCACAATCAAAAA GAAAAA CTT TTTTTC ACTCTTTCTGTTTTC HPAG1_0408 418888 - 420177 + | hypothetical protein HPAG1_0409 420308 - 420811 + | 3-dehydroquinate dehydratase TERM 375 421415 - 421435 + G 71 -4 -5.00616 | opp_overlap 421409, overlap 421405 421417 CGCGAGCAAGCCCCA TGCTTTGC CTAGC GCAAAGGA TTTTTTAAAAGCGGA TERM 376 421814 - 421835 + G 76 -4.3 -5.0538 | overlap 421815 GGTGTTTTCTGTAGA GCCTGGGAT TTAT ATCCCTGGA TTTTTTGGGGTGCGC TERM 377 421815 - 421834 + G 70 -7.8 -3.62746 | overlap 421814 GTGTTTTCTGTAGAG CCTGGGAT TTAT ATCCCTGG ATTTTTTGGGGTGCG HPAG1_0410 420825 - 421898 + | proline peptidase TERM 378 421928 - 421953 + G 72 -4.7 -4.83169 | overlap 421932 ACTAACCGCTTTTTC CCCAGCCTTTT TAAA AAAAGGCTTGA TTTTTCTAACAGGGT TERM 379 421932 - 421949 + G 77 -8.5 -3.88001 | overlap 421928 ACCGCTTTTTCCCCA GCCTTTT TAAA AAAAGGC TTGATTTTTCTAACA HPAG1_0411 421895 - 422386 + | 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase TERM 380 423003 - 422987 - g 74 -6.5 -4.42464 | opp_overlap 422986 AACTGGCCAAACAAA GCGGGAT GAA ATCCAGC CATTTAGATGAAATC flhF 422380 - 423759 + | flagellar biosynthesis regulator FlhF TERM 381 424438 - 424456 + G 71 -6 -4.1552 | AATTGCATTACTTAG GAGCGATT GAA AATAGCTC TTTGTTGAAACGCTA HPAG1_0413 423756 - 424640 + | ATP-binding protein HPAG1_0414 424928 - 424653 - | hypothetical protein TERM 382 425424 - 425408 - g 85 -8.7 -4.43669 | ATTGAAAAAATTAAA GAAGCCA AAA CGGCTTC AGATATTTATGCGTT fliA 424937 - 425704 + | flagellar biosynthesis sigma factor TERM 383 425793 - 425783 - g 89 -5.4 -5.4477 | AAATGTCCAAAAAAA GGAT ATT ATCC CGCAGCGCAGCGTAA fliM 425697 - 426761 + | flagellar motor switch protein FliM TERM 384 426773 - 426783 + G 70 -2.6 -5.06414 | opp_overlap 426773 GTGAGAAATGCAAGA TTTT ATT AAAA TTTTTATTCAAGAGG HPAG1_0417 426765 - 427628 + | flagellar motor switch protein FliY TERM 385 427897 - 427882 - g 73 -7.6 -4.0683 | opp_overlap 427885 427896, overlap 427896 AAAGAAAGCGAGAAA GGCTTT TTTG AAAGCC ACAAAAAATATGTGG HPAG1_0418 427657 - 428193 + | hypothetical protein HPAG1_0419 428190 - 428687 + | hypothetical protein HPAG1_0420 429159 - 428707 - | ferric uptake regulation protein HPAG1_0421 430494 - 429319 - | recombination factor protein RarA TERM 386 429366 - 429351 - G 76 -7.6 -4.15453 | opp_overlap 429349 CAAGCCATTCTAAAA GGGTTT TTTC AAACCC TATGCCTTGAGAAGA TERM 387 429713 - 429696 - G 82 -7.7 -4.56597 | opp_overlap 429696 CTTCGCTCGCAAAAA TCACCAG CCTT CTGGCGA TAAATTCCGGGTTTT TERM 388 429953 - 429935 - G 73 -10.2 -2.79983 | opp_overlap 429934 429931 429935, overlap 429934 AAAAGGTTTAATAAC GCTCTGGC ATC GCCAGCGC TGTTGTTTAAAAGAT TERM 389 429935 - 429953 + g 79 -10.2 -3.54755 | opp_overlap 429935 429934, overlap 429934 429931 AAAAGGTTTAATAAC GCTCTGGC ATC GCCAGCGC TGTTGTTTAAAAGAT TERM 390 430444 - 430463 + g 74 -5 -4.81249 | overlap 430445 TATTAAATGCTCTTG GCCTAAAA AATC TTCTAGGC TTTTTGGGTTTAAAA HPAG1_0422 430862 - 430491 - | putative heat shock protein HPAG1_0423 431738 - 430872 - | co-chaperone-curved DNA binding protein A TERM 391 431449 - 431421 - G 74 -6.1 -4.37886 | overlap 431423 CGAGTTTTGAGAAAA TCTTTGCGAAAAG CCT CCTTTCCCAAAAA TAGAGCTTAAAATAT TERM 392 432052 - 432071 + G 72 -10 -2.74248 | opp_overlap 432052, overlap 432051 AGGGGTGCAAAAAAA CCCTCACA GCTA TGTGGGGG CTTTAGCACGTCTTG TERM 393 432071 - 432052 - g 93 -7.8 -5.40474 | opp_overlap 432052 432051 AGGGGTGCAAAAAAA CCCTCACA GCTA TGTGGGGG CTTTAGCACGTCTTG HPAG1_0424 431906 - 433156 + | hypothetical protein HPAG1_0425 434000 - 433164 - | hypothetical protein TERM 394 433504 - 433486 - G 84 -2.4 -5.71638 | overlap 433478 TAATAAGCAAAAAAA TGAGCC TCTTTTT GACTCA CATTAAAAAAAGCGT TERM 395 434183 - 434209 + r 88 -8.8 -4.46212 | TTTAGCTCTTTTGAT TGCAAAAATGCT TTT GGCATTCTTGCA TTTTATGATCAACGC TERM 396 434263 - 434285 + r 76 -6.2 -4.56775 | overlap 434260 434259 ATTTTCTGTTATTTG CGCGGCAAGT TAT ACTTCCGGCG TTTTTCCCAAAGGCT HPAG1_0426 435152 - 434256 - | response regulator TERM 397 435208 - 435193 - R 77 -9 -3.28791 | AGTTTTTGTTTATAA CGCATG CTCA CATGCG CTTGGACTAACAGCC ispDF 436394 - 435174 - | bifunctional 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase/2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase protein TERM 398 436220 - 436230 + g 70 -3.2 -4.84363 | overlap 436211 GGGTATGATTAGAGC GTAG CCA CTGC TTTTTAATCGTTTGA HPAG1_0428 437846 - 436416 - | protease DO TERM 399 436717 - 436727 + g 82 -4 -5.4756 | GCACCGTTTTGAGCA GAAA TGG TTTC TTTTTTGTTAGGGTT HPAG1_0429 439332 - 437890 - | amino acid permease TERM 400 438864 - 438850 - G 78 -4.2 -5.28942 | overlap 438851 CAGGCTAAAGAAAAA CTCGCC CTC GGCAAA AATTTTAACCGAAAA HPAG1_0430 440148 - 439546 - | phosphatidylglycerophosphate synthase HPAG1_0431 440690 - 440082 - | hypothetical protein HPAG1_0432 441488 - 440700 - | 7-alpha-hydroxysteroid dehydrogenase TERM 401 440794 - 440779 - G 78 -4 -5.26316 | gap 1, overlap 440782 TCATCGCATAAAAAA TAAGCCG CTC CGGC-TA GATCGTTAGGATTGC TERM 402 440792 - 440782 - G 84 -8.2 -4.72201 | overlap 440779 TCGCATAAAAAATAA GCCG CTC CGGC TAGATCGTTAGGATT TERM 403 441344 - 441360 + g 75 -3 -5.20333 | CATCTTCTATGATTT TGTTGG CTTCT TCAACA TTTTTATTGTAAGTG HPAG1_0433 442387 - 441485 - | dihydrodipicolinate synthase HPAG1_0434 443736 - 442402 - | putative zinc protease TERM 404 443182 - 443165 - G 70 -5.5 -4.38154 | ATATCGTCCATAAAA CCAATGG GCGT CCAATGG TAGGGGTGATAGACA TERM 405 443505 - 443518 + g 70 -8.1 -3.6215 | AATGCTCTAACATGT GAGCG ATCC CGCTC TTTCCCATGACTTCG HPAG1_0435 444788 - 443733 - | dihydroorotate dehydrogenase 2 HPAG1_0436 446853 - 444826 - | polyphosphate kinase TERM 406 447136 - 447108 - R 95 -9.1 -5.03994 | opp_overlap 447117, overlap 447109 447110 447117 447126 447128 GGTTAGACACAAAAA CCTAAAAAATGCT AAA AGCATTTTTTAAA AATAAATAGTAAAGA TERM 407 447135 - 447109 - R 87 -10.4 -3.61674 | opp_overlap 447117, overlap 447108 447110 447117 447126 447128 GTTAGACACAAAAAC CTAAAAAATGCT AAA AGCATTTTTTAA AAATAAATAGTAAAG TERM 408 447134 - 447110 - R 87 -11.7 -2.76281 | opp_overlap 447117, overlap 447109 447108 447117 447126 447128 TTAGACACAAAAACC TAAAAAATGCT AAA AGCATTTTTTA AAAATAAATAGTAAA TERM 409 447117 - 447127 + r 76 -5.4 -5.03314 | opp_overlap 447110 447109 447108 447117 447126 CAAAAACCTAAAAAA TGCT AAA AGCA TTTTTTAAAAATAAA TERM 410 447127 - 447117 - R 80 -5.4 -5.30575 | opp_overlap 447117, overlap 447110 447109 447108 447126 CAAAAACCTAAAAAA TGCT AAA AGCA TTTTTTAAAAATAAA TERM 411 447169 - 447152 - R 77 -8.5 -3.61641 | AATAAATAGTAAAGA GCTTGAT TTTA ATCAAGC GATAATTTCTTAAGG HPAG1_0437 448544 - 447285 - | type I restriction enzyme S protein TERM 412 448216 - 448226 + g 82 -4 -5.51402 | opp_overlap 448216 448213 TAGTAATACAAATAA TTAG GGT CTAA TTTTTTTAAGTCTAT TERM 413 448505 - 448518 + g 70 -2.5 -5.1287 | TGTTTTGATTGATAG TAATT ACTG AATTA TTTTTTAAATCTAAA HPAG1_0438 450168 - 448537 - | type I restriction enzyme M protein TERM 414 448749 - 448769 + g 70 -2.6 -5.07652 | opp_overlap 448748, overlap 448748 448751 CAAAAGAAACCAGAG CGCAAAAA TCCGC TTTTTGGG TTTTATTTTGAAAAG HPAG1_0439 452467 - 450161 - | type I restriction enzyme R protein TERM 415 450456 - 450475 + g 73 -5.8 -4.50627 | TGATGCGTGATCGCA TACGATAA ATCA TTGTCGTA TTTATTTAATAAGTG TERM 416 450882 - 450897 + g 70 -2.6 -5.1675 | overlap 450883 TCAATATCCATTTTT TCTTTT AAGG AAAGGA TTTTTTCATCGCTAG TERM 417 451635 - 451647 + g 70 -2.7 -5.05153 | overlap 451636 TTAATGTATCTTTCA TGATT AAA AATCG TTTCTTTTTTAACCT TERM 418 452364 - 452352 - G 74 -9.1 -3.61371 | opp_overlap 452352 AAATGGTAGGTTAAA GCGGT TTT ACCGC TGCCTTGCGTGTGCC HPAG1_0440 453292 - 452561 - | type I restriction enzyme R protein HPAG1_0441 455235 - 453340 - | hypothetical protein TERM 419 453874 - 453862 - G 70 -3.3 -4.84527 | TTTAGAGAGCAAAAA GAGCG AGT CGCTA AAAGTTTCATAGCCT TERM 420 454803 - 454789 - G 70 -5.6 -4.47118 | overlap 454791 AATAGCCAAAAACAA GCCGTC TAA GACGCC ATAAATCATGGTAGG HPAG1_0442 456028 - 455261 - | hypothetical protein HPAG1_0443 456388 - 456038 - | hypothetical protein HPAG1_0444 457841 - 456354 - | hypothetical protein TERM 421 456841 - 456859 + gr 75 -8.2 -3.6445 | TATTTTTTCAATTTT TCATTGAC GGA GTCGATGA TTTCAGGGTTGTTGT TERM 422 456942 - 456929 - GR 70 -3.1 -5.00616 | gap 1, opp_overlap 456929, overlap 456932 456938 CTTCTTCGCAAAAAA TGAGCG AAA CGC-CA TTGGCTTTGGCTAGA HPAG1_0445 458341 - 457853 - | hypothetical protein HPAG1_0446 460062 - 458326 - | oligoendopeptidase F TERM 423 458894 - 458916 + g 71 -4.9 -4.61482 | TCTGCGGTGGTTAAG GGCGTAT CCATGTTCA ATACGCC TTGTTTTTTGGACAA TERM 424 459099 - 459113 + g 85 -8.6 -4.43859 | CCCAGCCTTCTTTGA TCGCTT TAG AAGCGA TTTTATGAAATTCTG TERM 425 459455 - 459468 + g 74 -5.3 -4.77925 | CGGGATTTTTCTAAC GCTTT ACTG AAAGC TTTTTGAGATTTTTT HPAG1_0447 461409 - 460159 - | glutathione-regulated potassium-efflux system protein TERM 426 461090 - 461076 - G 85 -5.7 -5.23016 | AAACAAGGGAAAAAA TGGGT GAAAG ACCCA AAACAAAATACCCCA TERM 427 461126 - 461114 - G 79 -3.3 -5.46657 | TACCCCAATAAAAAA GCGAT TAA AGCGC ATAAAACGACTTGTA HPAG1_0448 461754 - 461563 - | hypothetical protein HPAG1_0449 462289 - 461729 - | outer membrane protein HorE TERM 428 463057 - 463036 - g 72 -4.4 -4.72272 | opp_overlap 463036 TGTCGCTACTAAAAA CGCTCAAA TAGGCT TTGGAGCG TTATCCTTGATGGAT HPAG1_0450 462512 - 463252 + | molybdenum ABC transporter ModA TERM 429 463344 - 463355 + G 89 -5.8 -5.46629 | CCACCCTTATTTTAC TCCC TATA GGGA TTTTTTTAGGCTATT TERM 430 463441 - 463456 + G 74 -4.6 -4.88288 | GCCTTTAGTTTTACC CCCAAG CGTG CTAGGG TTTTATCTTCTTTTA TERM 431 463660 - 463676 + G 86 -2.1 -5.9873 | TTATAGTTTGGGTAA GGGGGAA TAT TACACCC TTTTTTTTGTCCTAC HPAG1_0451 463274 - 463948 + | molybdenum ABC transporter ModB TERM 432 464174 - 464160 - g 79 -3.6 -5.51402 | AGACACTCAAAAAAA GATTTT TTT AAAACC ACAACAACGAAAAAT HPAG1_0452 463945 - 464742 + | molybdenum ABC transporter ModD TERM 433 464861 - 464873 + T 72 -4.9 -4.88288 | AGAGCCAATTTTTTA GTTTT TCA AAAAC TTTTCTATTCTTTTG gltX 466249 - 464858 - | glutamyl-tRNA synthetase TERM 434 467432 - 467443 + G 71 -7.2 -3.86684 | opp_overlap 467432, overlap 467420 TCCCTCTTTTTCAAA CGCC TTGT GGCG TTTAATGTGAGTTAT HPAG1_0454 466367 - 467473 + | outer membrane protein HopJ TERM 435 468186 - 468198 + GF 76 -3.3 -5.24531 | opp_overlap 468188, overlap 468193 CTCTCAAAGCCTAGA TAGCG CGT CGCTC TTTTTTATAGCGAGT HPAG1_0455 467482 - 469119 + | type II adenine specific methyltransferase HPAG1_0456 469085 - 469927 + | hypothetical protein HPAG1_0457 469973 - 471772 + | GTP-binding protein HPAG1_0458 471788 - 472717 + | type II adenine specific DNA methyltransferase HPAG1_0459 472719 - 473303 + | hypothetical protein HPAG1_0460 473435 - 473917 + | type II DNA modification enzyme HPAG1_0461 474930 - 473986 - | catalase like protein HPAG1_0462 475216 - 476802 + | outer membrane protein HofC TERM 436 476876 - 476907 + G 91 -2.4 -6.11019 | opp_overlap 476882 476883 476886, overlap 476878 476883 476886 TGGGAGTTAGGGTTT TGGAAATTAAGAAA TATT TTTCTTACTCTCTA TTTTTTTTGCTTTTT HPAG1_0463 476860 - 478272 + | outer membrane protein HofD TERM 437 478278 - 478292 + F 70 -4.3 -4.87893 | AATTTACTAGTATTT TATCC TTAAT GGATA TTTTTGATTAGCCTT TERM 438 479553 - 479536 - g 76 -3.4 -5.20606 | AAAGAGCAAGAAAAA CAACGC AAGGAA GCGTTA AAAAAGAAATTAGAA HPAG1_0464 478414 - 481407 + | hypothetical protein HPAG1_0465 481409 - 482335 + | hypothetical protein HPAG1_0466 483845 - 482709 - | putative potassium channel protein TERM 439 483534 - 483524 - G 70 -5.4 -4.42238 | CCACGCTAACTAAAA TAGC CAC GCTA AAGGCAATGATTCCT rpmB 484183 - 483995 - | 50S ribosomal protein L28 HPAG1_0468 485119 - 484283 - | neuraminyllactose-binding hemagglutinin TERM 440 485400 - 485389 - g 75 -5.8 -4.66833 | opp_overlap 485388 GGCCAAGGCTAAAAA GGCT AACC AGCC CATTTCAAGCTTTGT TERM 441 486190 - 486173 - g 81 -5.5 -5.08011 | AAAACCCGCAAAAAA CGCCTTT TTTT AATGGCG CCTATCCATCATCAT mraY 485246 - 486307 + | phospho-N-acetylmuramoyl-pentapeptide-transferase TERM 442 486738 - 486754 + G 73 -2.1 -5.33026 | opp_overlap 486727, overlap 486740 CAATCGCCCTTGTGG GTGCTAG AAA CAAGCTC TTTTTCTTTGCATTA TERM 443 487016 - 487037 + G 70 -3 -5.06414 | gap 1, opp_overlap 487035, overlap 487016 AAAAATCCCTTCTAA CGC-CCTTT TTTTT AAGGGAGCG TTTTTATTAGACGCG TERM 444 487318 - 487302 - g 77 -8.7 -3.83026 | opp_overlap 487301 487302 GGGGGCGATATTAAA GGGGTCA ATT TAACCCC CCTTTTTGAAGAATT murD 486309 - 487577 + | UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase HPAG1_0471 487834 - 487574 - | hypothetical protein HPAG1_0472 488225 - 487824 - | hypothetical protein TERM 445 488080 - 488062 - G 85 -7.4 -5.00616 | GCGGGGGTGAAAAAA TCCGCTTT GAT AGAGCGGA TAACAAACACGCCTT TERM 446 489097 - 489107 + G 76 -3.2 -5.34857 | AGTGTTCACTTATTC CTTG GGG CAGG TTTTCTTTTCTTTAA HPAG1_0473 488456 - 489784 + | sodium- and chloride-dependent transporter TERM 447 489865 - 489905 + G 71 -6.2 -4.24984 | gap 1, overlap 489866 489901 GTTTAGGGCATATTT GGCGCTTTCCCTAT-ATGG TAGG TCATAATGGGGGGAGCGCG TTTGTGCTTTTATAT TERM 448 489866 - 489904 + G 73 -9.7 -3.13364 | gap 1, overlap 489865 489901 TTTAGGGCATATTTG GCGCTTTCCCTAT-ATGG TAGG TCATAATGGGGGGAGCGC GTTTGTGCTTTTATA TERM 449 490194 - 490157 - g 70 -8.6 -3.35046 | TGATTTGCCTAAAGA TTTAGAGCAAGCCAAA ATGCAA TTTAGCATGCTCCAAA ATGGCAGTTTAACCT TERM 450 490681 - 490698 + G 90 -4.1 -6.02919 | gap 1 CTAAAATGGGCATGA GCG-GGCA GAT TGTCTCGC TTTTTTTCTTTATAG TERM 451 491054 - 491042 - g 70 -7.7 -3.75153 | opp_overlap 491037 TTTCTTTAACGCAAA CGCTT TTA AAGCG TGGCATTTTAGCGTT HPAG1_0474 489795 - 491123 + | sodium- and chloride-dependent transporter TERM 452 491842 - 491860 + G 86 -10.2 -4.12738 | GTGTCGTTCGGTGAG CGCGGGGC AAC GCCCTGTG TTTCGTTTGGTGTGG HPAG1_0475 491138 - 492205 + | phospholipase A1 TERM 453 492398 - 492384 - g 85 -7.2 -4.9448 | overlap 492374 AGTCATTAAAGAAAA GCTTTT TTT AAAAGC CAGCGATTCAGATAT TERM 454 493016 - 493004 - g 75 -2.7 -5.1861 | CCGATTATCAAAAAA TCCTT CCC AAAGA ATACACTTCTTCTTT HPAG1_0476 492262 - 493386 + | DNA polymerase III subunit beta gyrB 493399 - 495720 + | DNA gyrase subunit B TERM 455 495897 - 495883 - g 76 -7.2 -4.16016 | GCATGTGGTAATAAA GAGTTT TTA AAACTC CAACACCCTAAAAAA TERM 456 496660 - 496682 + G 74 -4.2 -5.02074 | opp_overlap 496678 496680, overlap 496679 ATTATTGATCATTTC GCTTTTTTAA AAA TTAAAGACGC TTTTTTAAAAGATAA HPAG1_0478 495766 - 496758 + | hypothetical protein HPAG1_0479 496745 - 497500 + | hypothetical protein TERM 457 498247 - 498237 - g 81 -5.4 -5.00884 | opp_overlap 498237 ACGCTTGGCAAAAAA CGAT AAA ATCG CTATCGTTTATACAA TERM 458 498856 - 498841 - g 75 -5.4 -4.83169 | overlap 498823 ATTTTTTTAGAAAAA GCTCAG CATT CTAAGC AAAAATTAGAAGAAC HPAG1_0480 497716 - 498927 + | putative outer membrane protein HPAG1_0481 498927 - 499553 + | hypothetical protein HPAG1_0482 499594 - 500913 + | hypothetical protein TERM 459 501368 - 501358 - g 71 -6.8 -4.08692 | GAATGTCGCTGAAAA TGCC GGT GGCA TGCGCGCGGCTAAAT HPAG1_0483 500915 - 502294 + | glycolate oxidase subunit HPAG1_0484 502317 - 503081 + | dihydrodipicolinate reductase TERM 460 503131 - 503162 + F 100 -14.6 -2.78816 | TTTGTAAGGATTGAT CTTGCCTTGTGTGA TTAG TAACACAAGGCAAG TGTGATAAACCCTAC HPAG1_0485 503415 - 503531 + | urease-enhancing factor HPAG1_0486 505246 - 503801 - | glutamine synthetase TERM 461 504430 - 504442 + g 71 -6.2 -4.13945 | TCCCGCTCCCGTTAT CCCC ATATA GGGG TTTTGGCATGAAAGT TERM 462 505714 - 505700 - g 70 -3.6 -4.8543 | GAATTTTTAGAAAAA TTTTCG TGC CAAAAA ATCCAGAATCGCTAC TERM 463 506576 - 506563 - g 73 -2.4 -5.24129 | overlap 506575 CTTTGTTACAAAAAA GATC AATAAA GATC AATATCTTGAAAGTA TERM 464 507348 - 507338 - g 74 -4 -5.13137 | GAAATAAAGGAAAAA CTAA AAA TTAG AGATGTTTCTAATAT TERM 465 507420 - 507410 - g 70 -3.2 -5.0065 | GAGCTAGAAACAAAA GAGA ATA TCCC TTATTGTTTGGGGTT HPAG1_0487 505385 - 507481 + | hypothetical protein rplI 507547 - 507996 + | 50S ribosomal protein L9 HPAG1_0489 508000 - 508542 + | ATP-dependent protease peptidase subunit TERM 466 509196 - 509182 - g 93 -5.8 -5.59564 | overlap 509168 ATAAAGTCAAAAAAA CTTTAA GCG TTAAAG AGGCTAAAGAAGCCT hslU 508542 - 509873 + | ATP-dependent protease ATP-binding subunit TERM 467 510562 - 510542 - g 79 -8.3 -4.06864 | opp_overlap 510541 510542 TTTATAGAAGAAGAA CGCATAGAC AAG GTGTATGCG CGTATTATCGTAGAA era 509873 - 510778 + | GTP-binding protein Era HPAG1_0492 510775 - 511767 + | hypothetical protein HPAG1_0493 512700 - 511846 - | hypothetical protein TERM 468 512352 - 512367 + g 75 -2.5 -5.31275 | CTTTGATAGCGTTTT GTGCA TAGAAT TGCGC TTTTTTGTAATCCAC HPAG1_0494 512719 - 512958 + | IS606 transposase HPAG1_0495 513044 - 513391 + | cag pathogenicity island protein 1 TERM 469 514065 - 514040 - g 72 -3.3 -5.1356 | overlap 514041 GCTGATGAAGAAAAA GTTCTTTTAGG GTTT CCTAACAGAAA ATTCACTCCCAATGA HPAG1_0496 513407 - 514165 + | HP0521B-like protein TERM 470 515199 - 515183 - g 81 -2.9 -5.61881 | overlap 515185 GTTGAAAAAGAAAAA CGCTAAG AAA CCTAGAG TAGTGGAAGTGCCTA HPAG1_0497 514158 - 515603 + | cag pathogenicity island protein 3 HPAG1_0498 515613 - 516122 + | cag pathogenicity island protein 4 HPAG1_0499 518487 - 516241 - | cag pathogenicity island protein 5 HPAG1_0500 519488 - 518496 - | cag pathogenicity island encoded protein/ATPase protein TERM 471 518880 - 518890 + g 73 -5.4 -4.56978 | TTCGGTGTCTTCAAT GGAT ATG ATCC TTTCTTCTTTAGGGA TERM 472 519437 - 519452 + g 87 -4.8 -5.5208 | CTTCTTTTAAAGCTC TTTCTA CTTC TAGAAA TTTTTTATCTTCTGC HPAG1_0501 520092 - 519493 - | cag pathogenicity island protein Z HPAG1_0502 524114 - 520227 - | cag pathogenicity island protein Y TERM 473 521391 - 521374 - G 72 -8.5 -3.55444 | opp_overlap 521370, overlap 521389 CCGCCATTTTTGAAA TCCATTG GTAA CAATGGA TAACCTTTAGCCGCC HPAG1_0503 526161 - 524173 - | cag pathogenicity island protein Y TERM 474 525927 - 525959 + g 86 -10.8 -3.87583 | CTAGACTGCCATTGC TAGATTCTGAAGTT TCATT ACCTTCAGAATCTA TTTGAGTTTGGGTTT HPAG1_0504 527747 - 526176 - | cag pathogenicity island protein X TERM 475 526911 - 526934 + g 77 -11 -2.89565 | opp_overlap 526909, overlap 526909 CACAACAAGATTAGT TCTCCAAGCG CTAT CGCTAGGAGA TAATTCTATGGAGTT HPAG1_0505 529404 - 527797 - | cag pathogenicity island protein W TERM 476 528356 - 528345 - G 76 -2.2 -5.36965 | CAACATTAGAAAAAA CAGC TCTT ACTG CAGGTAAAATTGAAT TERM 477 528973 - 528988 + g 82 -4 -5.38958 | GTCTAGCACGCTATC CATGGA TACA TCTATG TTTTTATTTATCAAT HPAG1_0506 530167 - 529409 - | cag pathogenicity island protein V HPAG1_0507 530565 - 531215 + | cag pathogenicity island protein U HPAG1_0508 531228 - 532070 + | cag pathogenicity island protein T TERM 478 532110 - 532130 + T 77 -7.6 -3.96298 | gap 1, opp_overlap 532110 532114 TTCTAAGAGTAGAGA GC-AACGCC AATG GGCGTTAGC TTTACTTGATAGGTA TERM 479 532193 - 532213 + T 77 -8.4 -3.91506 | overlap 532192 TCATCATTTTTTAAT TTTGTCTC TGCTT GAGACAAA TATTTTTCAAACTGA HPAG1_0509 532277 - 532188 - | hypothetical protein HPAG1_0510 532869 - 532270 - | cag pathogenicity island protein S HPAG1_0511 533681 - 533301 - | cag pathogenicity island protein Q HPAG1_0512 534882 - 536012 + | cag pathogenicity island protein M HPAG1_0513 536027 - 536947 + | cag pathogenicity island protein N HPAG1_0514 537742 - 537029 - | cag pathogenicity island protein L HPAG1_0515 538884 - 537739 - | cag pathogenicity island protein I HPAG1_0516 540007 - 538895 - | cag pathogenicity island protein H TERM 480 539387 - 539354 - G 80 -4.5 -5.28481 | CATGCAACTAAAAAA CACTTTTGATGAGCC AACA AGCGCACCTAAAGCG GTACAGCTATCAAGG HPAG1_0517 540452 - 540024 - | cag pathogenicity island protein G HPAG1_0518 541313 - 540507 - | cag pathogenicity island protein F HPAG1_0519 542631 - 541315 - | cag pathogenicity island protein E TERM 481 541484 - 541469 - G 88 -9 -4.54727 | CCTCTCAAATTAAAA CTAGCG ATAA CGCTAG GGCTTCCATCTTGTT TERM 482 541760 - 541739 - G 78 -7.3 -4.37092 | opp_overlap 541726 ATGTCTCTTACAAAA TAAGCGACC TTTG GATCGCCTA AATATTTCCAAGCTT TERM 483 542277 - 542267 - G 70 -5.4 -4.4078 | opp_overlap 542267 GCCGCCCAAGCAAAA GGAT TTA ATCC TGTATCTGTCCCTAG TERM 484 542547 - 542561 + g 73 -5.7 -4.63527 | opp_overlap 542546 542547 AATTCAGATAAAAAG GCGAA TTGAT TTCGC TTTTTAGCGTCATCA HPAG1_0520 544265 - 542661 - | cag pathogenicity island protein E TERM 485 544102 - 544090 - G 83 -6.3 -5.12172 | GAGGAATAAATAAAA GTTTC AGG GAAAC CAAACAACCTATTCC HPAG1_0521 544924 - 544274 - | cag pathogenicity island protein D TERM 486 544744 - 544760 + gr 93 -2.1 -6.23317 | opp_overlap 544747, overlap 544747 CTAAATTCGTATAAA CAAGCCC ATT GGGAGTG TTTTTTTCTTTTTCT HPAG1_0522 545246 - 544899 - | cag pathogenicity island protein C HPAG1_0523 545618 - 545391 - | cag pathogenicity island protein B TERM 487 545792 - 545819 + H 95 -8.7 -5.2204 | overlap 545812 TTCTTATTTCTTTAT CTTGTTAAAAT TTGTCT ATTTTAACAAG TTTTTGTTAATTGTG TERM 488 546204 - 546181 - g 74 -5.3 -4.72986 | GATCCTGATCAAAAA CCAATCGTT GATAAG AACGATAGG GATAACAGGCAAGCT TERM 489 546536 - 546517 - g 87 -5 -5.40464 | overlap 546533 GATGACAAAGAAAAA GCAGAGTT TTTG AAATCTGC CAAACAATCTTTTGC TERM 490 548533 - 548523 - g 82 -4 -5.48303 | ACAAGCTCAAAAAAA TGAA GAT TTCA ATACTGGAAAAAATT TERM 491 548770 - 548750 - g 93 -7.5 -5.42605 | TCAATAAAAAGAAAA CAGGACAAG TAG CTAGCCCTG AAGAACCCATTTATG TERM 492 548827 - 548807 - g 93 -7.5 -5.42605 | TCAATAAAAAGAAAA CAGGACAAG TAG CTAGCCCTG AAGAACCCATTTATA TERM 493 549379 - 549363 - g 81 -2.9 -5.53288 | overlap 549364 GCTAACGCAAAAAAA CCCTGAG TGG CTCAAGC TCGTGAATGATAAGA HPAG1_0524 546049 - 549651 + | cytotoxin-associated protein A TERM 494 549707 - 549681 - T 78 -5.8 -4.92239 | opp_overlap 549684, overlap 549682 549684 CCAAAAACGCAAAAA CCACCCCTTGCT AAA AACAAGGGGTTT TTTAACTTAGAATAT TERM 495 549706 - 549682 - T 78 -9.3 -3.53717 | opp_overlap 549684, overlap 549681 549684 CAAAAACGCAAAAAC CACCCCTTGCT AAA AACAAGGGGTT TTTTAACTTAGAATA TERM 496 549684 - 549704 + T 100 -9.7 -5.15969 | opp_overlap 549684 549682 549681 AAAACGCAAAAACCA CCCCTTGCT AAA AACAAGGGG TTTTTTAACTTAGAA TERM 497 549704 - 549684 - T 89 -11.9 -3.31103 | opp_overlap 549684, overlap 549682 549681 AAAACGCAAAAACCA CCCCTTGCT AAA AACAAGGGG TTTTTTAACTTAGAA HPAG1_0525 549863 - 549714 - | transposase B-like protein HPAG1_0526 550033 - 549878 - | transposase B-like protein HPAG1_0527 550902 - 550135 - | glutamate racemase TERM 498 550865 - 550833 - G 75 -5.7 -4.7373 | TGATTTCATCAAAAA TTTGCGCTTTTAAAA GAC TTTTTAAAACGCTAA ACCCTCCCACACCGC rho 552255 - 550939 - | transcription termination factor Rho TERM 499 552192 - 552209 + g 76 -6.9 -4.39571 | opp_overlap 552192 552191 CTTCAATGTGATAAC CGCTCAC TGGC GTGTGCG TTTTGACTTTGTGCG rpmE 552519 - 552722 + | 50S ribosomal protein L31 HPAG1_0530 552747 - 553610 + | hypothetical protein HPAG1_0531 553623 - 554306 + | hypothetical protein TERM 500 555103 - 555077 - g 90 -3.2 -5.9873 | opp_overlap 555079 555091, overlap 555079 555089 GGATGAGAAAAAAAA TTCCTTTCAAAA GGT TTTTAAAAAAAA TTATTCTTTAGAAAC HPAG1_0532 554319 - 555284 + | hypothetical protein HPAG1_0533 555281 - 556102 + | hypothetical protein HPAG1_0534 556603 - 556166 - | hypothetical protein TERM 501 556315 - 556299 - G 72 -3.6 -5.16969 | overlap 556300 CATACAAAAAATAAA TGCGCT GGTAA AGCGCC AAGCAATAGTGAAAC HPAG1_0535 557986 - 557048 - | acetyl-CoA carboxylase carboxyltransferase subunit alpha TERM 502 557358 - 557347 - G 72 -4.4 -4.69622 | ATATAACGCTAAAAA TGGA ATAT TCCA TCATAGCCAACTTGT HPAG1_0536 559246 - 558008 - | 3-oxoacyl-(acyl carrier protein) synthase II TERM 503 558424 - 558399 - G 71 -6.7 -4.08767 | gap 1, opp_overlap 558399 558394 558406 TTCATGGCTCTAAAA GCCCCTTCACCC TCA GGG-GCTGGGGC TGTGATGTGGTTAGC TERM 504 559309 - 559284 - R 73 -7.5 -3.68619 | opp_overlap 559286, overlap 559285 559299 TTTAATTCAGTGAAA CCGCCCCTTTC TAAA GAAAGGGGCTT CCTAACTAAAGCATT TERM 505 559308 - 559285 - R 83 -11 -2.8085 | opp_overlap 559286, overlap 559284 559299 TTAATTCAGTGAAAC CGCCCCTTTC TAAA GAAAGGGGCT TCCTAACTAAAGCAT TERM 506 559286 - 559307 + r 100 -14.5 -3.18264 | opp_overlap 559285 559284 559299 TAATTCAGTGAAACC GCCCCTTTC TAAA GAAAGGGGC TTCCTAACTAAAGCA HPAG1_0537 559369 - 559262 - | hypothetical protein TERM 507 559335 - 559320 - G 71 -7.6 -3.90112 | GGCTTCCTAACTAAA GCATTC CATT GAATGC TAACACGAAAGGCTT HPAG1_0538 559794 - 559558 - | acyl carrier protein HPAG1_0539 559927 - 559847 - | hypothetical protein fabG 560768 - 560025 - | 3-ketoacyl-(acyl-carrier-protein) reductase rpsU 561022 - 560810 - | 30S ribosomal protein S21 HPAG1_0542 562372 - 561122 - | hypothetical protein TERM 508 561741 - 561706 - G 71 -6.5 -4.18494 | CAGCCCCATTTAAAA GGTA-TTTGTCTTCGTT ATGG AAC-AAGACAAAATACC CTCCAATACCCAATA TERM 509 561998 - 562010 + g 74 -4.8 -4.72272 | opp_overlap 561998 562009 AATATTCAAACCATA CCTC CCTAA GAGG TTTTTCCTAGGGAAA TERM 510 562185 - 562175 - G 70 -5.4 -4.37092 | ACCTCTTGTATAAAA TTGG ATC CCAA AATTTGGAGTTAGAC HPAG1_0543 562544 - 562786 + | hypothetical protein TERM 511 562776 - 562792 + T 89 -10.9 -3.58305 | TTAATGATTCTTCTA GTAGGCT TTA AGCCTAC TTTAAGGCGTTCGTT HPAG1_0544 563457 - 562810 - | hypothetical protein TERM 512 563402 - 563384 - G 71 -6 -4.15088 | AAAATGATAAAAATA GCTATATG CAT CAAATAGC CGCCTAGATTCTGGA dapF 564385 - 563564 - | diaminopimelate epimerase TERM 513 563752 - 563722 - G 78 -3.9 -5.24129 | gap 1, overlap 563723 GCGTGTTATAAAAAA TGCGT-GCGGCGAT AAAA ACCGCCGCCATGCC TGTCCCGCAAGCTAG TERM 514 565274 - 565287 + G 73 -6.7 -4.26305 | opp_overlap 565273 GGGAATGTGAATGAG GCGAT ATTT ATCGC TTTGTATTCCATTTT HPAG1_0546 564500 - 565549 + | membrane protein HPAG1_0547 566674 - 565907 - | hypothetical protein TERM 515 566196 - 566217 + g 76 -2.3 -5.40072 | opp_overlap 566196 CTCGGCCATTTAAAG GTCTTTTGG ATAT TCAAAAAAC TTTTTTTAAACAAAC HPAG1_0548 567918 - 566818 - | translation-associated GTPase TERM 516 567398 - 567439 + g 72 -4.7 -4.69464 | gap 1, opp_overlap 567407, overlap 567407 567431 TTCGCTGGTTTTAAT TCTTCTA-AATGCGTTTTTA AAC TCAAAGCGCATTCTAAAAGA TTTTTAGCGTCTTTT TERM 517 567828 - 567838 + g 76 -6.8 -4.44277 | overlap 567827 AAAAAGGGTAGTTCG CGCT TTG AGCG TTTTGGGTTTTAGTG HPAG1_0549 569410 - 567920 - | leucyl aminopeptidase TERM 518 568729 - 568749 + g 76 -3.2 -5.31091 | CAAGAGAGGCTTTAT TGACCGCT AAAAA GGCGTTCA TTTTCTTTTCTTCTA TERM 519 569101 - 569077 - G 71 -7.2 -3.94933 | opp_overlap 569077, overlap 569075 569098 TCAAGCCCAAAAACA GCGCTTTCAA GTTTT CTAAAAGCGC GTTATCTTTAGAATG HPAG1_0550 570036 - 569458 - | hypothetical protein HPAG1_0551 570590 - 570051 - | adenine phosphoribosyltransferase TERM 520 570575 - 570589 + g 77 -6.4 -4.64464 | GTAAAAGTTCTTCTT TGAGCG TTT CGTTCA TTTTGATTTCCTTTA HPAG1_0552 570980 - 570648 - | hypothetical protein HPAG1_0553 571486 - 571025 - | ribose-5-phosphate isomerase B HPAG1_0554 572205 - 571507 - | hypothetical protein HPAG1_0555 573086 - 572214 - | signal peptidase I TERM 521 572287 - 572273 - G 70 -8.6 -3.35522 | overlap 572271 CAACGCTTTTAAACA TGCGTT CCC AACGCA CCAAATAGCGTTTTT HPAG1_0556 573964 - 573086 - | methylene-tetrahydrofolate dehydrogenase TERM 522 573732 - 573744 + g 75 -5.5 -4.66163 | opp_overlap 573732, overlap 573733 TTGGCTTCAGTAATA TCCTC TTG GAGGG TTTTTAAGTCAAAAT TERM 523 573760 - 573781 + g 73 -7.3 -3.96696 | opp_overlap 573759 573760 573763, overlap 573761 573763 TTTTTAAGTCAAAAT CCATGCCAA CCCT TTGGCATGC TTTGATCTTCATATT TERM 524 573761 - 573780 + g 78 -10.8 -2.96933 | opp_overlap 573760 573759 573763, overlap 573760 573763 TTTTAAGTCAAAATC CATGCCAA CCCT TTGGCATG CTTTGATCTTCATAT HPAG1_0557 576068 - 574038 - | hypothetical protein TERM 525 575384 - 575369 - G 70 -5.4 -4.45168 | gap 1, opp_overlap 575380 575381, overlap 575370 575380 GTGTTAAAAGATAAA GGTTGCG AAA CGCA-CC GGGGGTGATTTTCAT TERM 526 575649 - 575636 - G 86 -4.5 -5.47914 | opp_overlap 575636 AAAAACTAGAAAAAA TAGGG TATT CCCCA CTCATTTTTAAAATC TERM 527 576037 - 576025 - G 75 -2.7 -5.29846 | overlap 576019 576026 AAGGTGAAATAAAAA CCTTT TAA AAAGA GCGAAAAAAGGGCAT HPAG1_0558 576631 - 576074 - | hypothetical protein HPAG1_0559 577753 - 576635 - | hypothetical protein TERM 528 577016 - 577004 - G 74 -9.1 -3.54638 | opp_overlap 577002 AGAATGGTTTCTAAA CGCCA TGA TGGCG CAATCTTTAAAGGGG HPAG1_0560 578748 - 577729 - | dihydroorotase HPAG1_0561 579717 - 578752 - | putative siderophore-mediated iron transport protein TERM 529 579097 - 579114 + g 84 -7.7 -4.76233 | ATCAATATCCCTTCT GGTTTGG TTAT CCAAGCC TTTATTATTTTCTTG TERM 530 579670 - 579656 - G 70 -8.6 -3.2964 | opp_overlap 579655, overlap 579645 AAATTCCTGTTAGAA TGATCC ACA GGATCA AAATTTTTCCCTAAC HPAG1_0562 580582 - 579701 - | hypothetical protein TERM 531 580086 - 580114 + g 80 -4.5 -5.27938 | GCTCGCTCTTTTTCA TCTTGGCTTGCGA GAT TGGCATGCTGAGA TTTTTCTTTCAGGCT HPAG1_0563 580950 - 580579 - | flagellar motor switch protein HPAG1_0564 581595 - 581032 - | endonuclease III HPAG1_0565 581914 - 581678 - | hypothetical protein TERM 532 581808 - 581794 - G 70 -5.6 -4.36127 | opp_overlap 581794 581793, overlap 581787 TGGAATAATGCAAAA GGGTGC ATT GAACCC CTTCATGGATACCAA HPAG1_0567 584849 - 581916 - | hypothetical protein TERM 533 582174 - 582186 + gH 79 -4.9 -5.04175 | GGAAACTTCTAAATT CAAAT CTA ATTTG TTTTTGTCTAATTCA TERM 534 582570 - 582585 + gH 95 -9 -4.98255 | opp_overlap 582569, overlap 582581 CCCATGCACTAAATC CGCCAT GATC ATGGCG TTTTTATAATTGCCA HPAG1_0566 584767 - 585756 + | aminodeoxychorismate lyase oorD 585941 - 586282 + | 2-oxoglutarate-acceptor oxidoreductase subunit OorD TERM 535 586675 - 586662 - g 70 -8.1 -3.6543 | opp_overlap 586662 586661 GAATTTCTTAAAACA CCCCA TACA TGGGG ATTTTAAAGCCGTTG oorA 586282 - 587409 + | 2-oxoglutarate-acceptor oxidoreductase subunit OorA oorB 587411 - 588232 + | 2-oxoglutarate-acceptor oxidoreductase subunit OorB oorC 588232 - 588786 + | 2-oxoglutarate-acceptor oxidoreductase subunit OorC TERM 536 588801 - 588784 - f 70 -4.1 -5.03145 | opp_overlap 588782 588779 588784 588788 GAAGCTTTGAAAAAA TAAGGGG GTAA CTCCTTA TCTTATTTTTCTTTA HPAG1_0572 588896 - 589579 + | hypothetical protein HPAG1_0573 589645 - 590673 + | hypothetical protein TERM 537 590742 - 590756 + F 85 -2.9 -6.08342 | opp_overlap 590742 TAATTCTCTCAAAAG TTATC CACTA GATAA TTTTTTTATTTATTA HPAG1_0574 590818 - 590982 + | hypothetical protein TERM 538 591007 - 591018 + G 81 -3 -5.63517 | TGAATAAAGAAACCC GATT TTAT AATC TTTTTTCTTTGGCGG TERM 539 591417 - 591433 + G 83 -5.1 -5.34632 | opp_overlap 591417 591416 GATCATTCATTAAAC GCGCT CCAAAAA AGCGC TTTTTATGTTTTCTT HPAG1_0575 590991 - 592463 + | hypothetical protein TERM 540 592811 - 592825 + F 73 -4.3 -5.09225 | GGCTTATTCTAATGC TCAAC TGCGT GTTGA TTTTTTAAATAAAGT TERM 541 593172 - 593155 - g 78 -2.7 -5.46276 | gap 1, overlap 593169 AAGAGATAGAAAAAA TCGCTACC AAA AG-AGCGA CAATAAGAGTGGCGC HPAG1_0576 592938 - 593516 + | tumor necrosis factor alpha-inducing protein HPAG1_0577 595498 - 593519 - | penicillin-binding protein 1A TERM 542 594423 - 594438 + g 83 -3.2 -5.67063 | CGTTTGGCTTGCGTG GCGC GATTGAAA GCGC TTTTTTTATAATCAA TERM 543 594891 - 594879 - G 70 -3.3 -4.84359 | GTAGGGTCATAAAAA CTTGG AGC CCTAG GCAAGGCGACTAACA TERM 544 595165 - 595175 + g 81 -6.8 -4.77036 | opp_overlap 595164, overlap 595153 CTTCGGTGTAACGAC CGCT TTT AGCG TTTTTAATCATAGCG HPAG1_0578 596619 - 595498 - | 8-amino-7-oxononanoate synthase TERM 545 595882 - 595866 - G 72 -8.7 -3.53343 | opp_overlap 595866 AAGCGGTGGTGTAAA TCACGCT TTT AGCGCGA TTGGTTAAAAACTCT HPAG1_0579 597943 - 596642 - | hemolysin secretion protein TERM 546 597634 - 597644 + g 73 -5.4 -4.56597 | TATGGTATTCCCCCA CACA ACT TGTG TTTTTAGCCAACGAA HPAG1_0580 598929 - 598015 - | multidrug resistance protein HPAG1_0581 599791 - 598895 - | multidrug resistance protein TERM 547 599785 - 599811 + gH 87 -6 -5.20222 | TGGTATCCATTGGTG TTTGCATTCAAT AAC ATTGGGTGTAAA TTTTCTTTATTTAAT TERM 548 599911 - 599934 + H 74 -3.8 -5.24129 | overlap 599912 CCGATAATAGTTCCA ACCAAAAGCA AGGA TGCCTTTGGG TTTTTTATAACAAGG TERM 549 599912 - 599933 + H 70 -7.3 -3.73995 | overlap 599911 CGATAATAGTTCCAA CCAAAAGCA AGGA TGCCTTTGG GTTTTTTATAACAAG HPAG1_0582 599960 - 601492 + | flagellin A TERM 550 601517 - 601537 + F 100 -11.9 -4.40221 | AGGTGTTTGTATGGG GCTAACGCT TTA AGCGTTGGC TTTTCGCTTTCATTT TERM 551 601860 - 601873 + G 70 -5.9 -4.36914 | overlap 601861 AGCTTGCAGAGTGTG TCCGC CCTA GCGGG TTTTATAACCAAAAA HPAG1_0583 601610 - 602266 + | 3-methyladenine DNA glycosylase HPAG1_0584 602263 - 602880 + | hypothetical protein TERM 552 603346 - 603329 - g 79 -8.5 -4.12942 | opp_overlap 603329 603328 TCAAACGCGCCAAAA GCTTTCT AAAG AGAAAGC GTTAATCGGTTTTTG hemE 602946 - 603968 + | uroporphyrinogen decarboxylase TERM 553 604228 - 604216 - g 75 -2.6 -5.2112 | opp_overlap 604220 604224, overlap 604217 604220 604224 AATACCATGAAAAAA GCGA TAAAG CCGC TTTGGGGCTTTATGA TERM 554 604322 - 604337 + G 89 -9 -4.72386 | opp_overlap 604305 604321 604316 604324 GATGAAGAACCATAC CATCGC CAAA GCGATG TTTTTGCCTACTTTG HPAG1_0586 603978 - 605411 + | hypothetical protein HPAG1_0587 605422 - 606126 + | membrane fusion protein of the hefABC efflux system HefB TERM 555 607236 - 607254 + G 91 -11 -4.41494 | CATGGGGACTTTTGC GCTCATCC AAT GGATGGGC TTTTCATTAAACATG TERM 556 608187 - 608176 - g 70 -3 -5.11033 | opp_overlap 608163 GAGAATTTGAAAAAA TTCT TATT AGAA AGCCCTGAATTAAAA TERM 557 608798 - 608820 + G 75 -2.6 -5.22312 | overlap 608799 TCATCATGGTTACCA TGCCCTTAAG CTT TTCAGGGGCG TTTTTTGCTCTGGGT HPAG1_0588 606139 - 609225 + | cytoplasmic pump protein of the hefABC efflux system HefC HPAG1_0589 609222 - 609791 + | hypothetical protein TERM 558 610570 - 610559 - g 71 -7.2 -3.90291 | opp_overlap 610559 610558, overlap 610542 610541 ATTTTGGCAACCAAA CCCC TAAT GGGG GCTTTAATGCTATGG TERM 559 610879 - 610857 - g 73 -7.8 -3.88731 | opp_overlap 610857, overlap 610850 TAATACTATAGGAAA TGCCTACATT CTT AATGCAAGCA ATATTACTTTTAATA TERM 560 612717 - 612727 + G 76 -6.8 -4.43681 | opp_overlap 612711 GCAAGATTATAGCGG CGCT AAC AGCG TTTTAGTGTTCAATC TERM 561 617356 - 617372 + G 71 -3.7 -4.89393 | TATCAGGGCAGGCTT TCTTTTG TAT CTAAAGA TTTTTCTAACATTTC TERM 562 617551 - 617564 + G 73 -6.7 -4.20783 | opp_overlap 617550 617546 617560, overlap 617547 ACGCTAGAAGTGAAT GCGAA TAAT TTCGC TTTCTTAGGTGCAAT HPAG1_0590 609910 - 619467 + | putative vacuolating cytotoxin (VacA)-like protein TERM 563 619474 - 619485 + T 80 -7.2 -4.59853 | opp_overlap 619473 GCGTTTTAAAAGTAG GGGG CTTA CCCC TTTTTGAGCCATTAA HPAG1_0591 620038 - 619529 - | hypothetical protein HPAG1_0592 620285 - 620046 - | ABC transporter, permease HPAG1_0593 620761 - 620285 - | ABC transporter, ATP-binding protein HPAG1_0594 620981 - 620745 - | ABC transporter, ATP-binding protein TERM 564 621186 - 621171 - R 87 -7.6 -4.86385 | ACTCTCAAAAATAAA CAAAGC CAAG GCTTTG AATAAAAAGATCAAT HPAG1_0595 621619 - 621287 - | hypothetical protein ligA 623714 - 621744 - | NAD-dependent DNA ligase LigA TERM 565 622507 - 622496 - G 70 -5.8 -4.36914 | TCTCTTCGCATAAAA GCTC ATAC GAGC ATATAGGGCAAACTT TERM 566 622619 - 622635 + g 71 -3.8 -4.83715 | opp_overlap 622610 TAATGACAACGACCC TATCAT TGAGC ATGATA TTCTTTTTTTCAATT TERM 567 622735 - 622715 - G 71 -6.8 -4.10657 | CTACAGGCTCTAAAA GAGCGACC GGTGT GATCGCCC CACTGCGCCCCACTT TERM 568 623480 - 623496 + g 70 -2.9 -5.06414 | overlap 623481 CATCTAAGCTCCACA TCCGCAT TAA ATGGGGG TTTTTATTGAACGGA TERM 569 623842 - 623814 - g 74 -6.1 -4.431 | gap 1, overlap 623817 GAGGCATTGACAAAA CGACTTCGTTGC ACTTAA ACAACGAAG-CG CAATTTCTGTGTTTT HPAG1_0597 623792 - 624733 + | chemotaxis protein TERM 570 624854 - 624867 + G 80 -4.5 -5.24551 | opp_overlap 624854, overlap 624848 TAACACTTATAGAGA CCATG GAGG CGTGG TTTTTATTGATTTAA TERM 571 625224 - 625235 + G 81 -7.2 -4.62471 | ACTCGTAACACTCTA GCCC AAAA GGGC TTTTTAGAGATTGAA aspS 624768 - 626501 + | aspartyl-tRNA synthetase TERM 572 627068 - 627050 - g 71 -6 -4.23045 | opp_overlap 627050 627049 627064 GAAGCATTGAAGAAA TCGTGCAT GAA ATGCAAGA GTATATCTTGTCTTT adk 626518 - 627093 + | adenylate kinase HPAG1_0600 627119 - 628117 + | putative lipopolysaccharide biosynthesis protein HPAG1_0601 628137 - 628718 + | putative lipopolysaccharide biosynthesis protein TERM 573 629471 - 629433 - gf 75 -8.3 -3.62041 | gap 1, overlap 629447 ATACAGCAAACAATA CGCTCCTTTAAAAACCCC TAAA GAGGTTTA-AAAAGAGCG GGCTTTATGTTAGAA HPAG1_0602 628657 - 629463 + | putative lipopolysaccharide biosynthesis protein HPAG1_0603 629518 - 630039 + | inorganic pyrophosphatase TERM 574 630036 - 630025 - T 72 -5.8 -4.52803 | GAGAAAGCCATAAAA GCCT ATCA AGGC TAAAGATTTAAGGGT TERM 575 630099 - 630073 - T 70 -7.4 -3.69434 | opp_overlap 630048 630069 630073 TCAATTAAGCTTAAA GCCCTTTTAACA CTC TTTTAAAAAGGC TTTGTTCTCATCGGG HPAG1_0604 632493 - 630187 - | recombination and DNA strand exchange inhibitor protein TERM 576 630249 - 630262 + gT 76 -4.5 -5.06103 | CGTCGCTAAAGCTTA CCACT TTGG GGTGG TTTTTTAAAAATTCT TERM 577 630990 - 630980 - GT 73 -2.4 -5.26875 | overlap 630981 TTTTCAATCAAAAAA TGCG GCA CGCC ATAGCGTAAAGCGGT TERM 578 631756 - 631775 + gT 70 -2.8 -5.03747 | overlap 631758 TATTTCATTACCAAT TTGTGCGA TTTT TTGCGCGA TTTTTTGGGCGCTTT HPAG1_0605 632816 - 632451 - | hypothetical protein TERM 579 632643 - 632628 - GR 73 -5.4 -4.56597 | opp_overlap 632628 632634 632641 TTCCCCCCTTAAAAA CGCTCT TTGC AAAGCG ATTTCTTGCTGGTTT murC 634165 - 632816 - | UDP-N-acetylmuramate--L-alanine ligase TERM 580 633440 - 633454 + g 90 -3.6 -5.93809 | TTTTAAAATGTATTG GATATT ATA AATGTC TTTTTTTTCTAAAAC TERM 581 634118 - 634133 + g 75 -5.4 -4.66163 | ACCGATAAAATGGAT CTTGCA ATCT TGCAGG TTTTTGAGTAAAACT HPAG1_0607 635285 - 634158 - | hypothetical protein TERM 582 635017 - 634990 - G 87 -6.4 -5.34857 | TCAAATAAAACAAAA CTAGGGAAAT TGAATAAC ACTTCCCTAG ATCCTAGCGTGGAAA ispG 635405 - 636484 + | 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase HPAG1_0609 636487 - 637692 + | tetrahydrodipicolinate N-succinyltransferase HPAG1_0610 637704 - 638762 + | hypothetical protein TERM 583 638903 - 638915 + F 76 -5.5 -5.03747 | overlap 638904 TTTGGATAAATTCAG TCGCA AAT TGCGG TTTTTTCACAAATTT HPAG1_0611 638995 - 639501 + | hypothetical protein HPAG1_0612 639522 - 641042 + | hypothetical protein TERM 584 641065 - 641048 - T 73 -9.1 -2.88366 | opp_overlap 641064, overlap 641047 641044 TGTGGAATGAACAAG CCCCCAA AAAA TCGGGGG GTTAAAAACCCTTAT TERM 585 641064 - 641076 + T 80 -7.7 -4.19746 | opp_overlap 641048 641047 641044 CCCCAAAAAATCGGG GGGTT AAA AACCC TTATTTTAAAATCAC HPAG1_0613 641672 - 641088 - | modulator of drug activity TERM 586 641572 - 641583 + g 76 -4.4 -5.1101 | opp_overlap 641572 ACTTCTAGCCCTAAA GACT CTAA AGTC TTTTTTGCATGGTCA TERM 587 642159 - 642139 - g 72 -8.4 -3.4439 | TACATCAACCTAGAA TACCATGA AACTA TCATGGTA GCGAGCGGTTTTCAG HPAG1_0614 641803 - 642957 + | quinone-reactive Ni/Fe hydrogenase HydA TERM 588 644617 - 644645 + G 75 -8.2 -4.07885 | CATTCTTTTGACCCA TGCATCGCATGC TCAGT GCATGTGATGGA TTTTAAAGGGCAGTC HPAG1_0615 642967 - 644703 + | quinone-reactive Ni/Fe hydrogenase HydB HPAG1_0616 644717 - 645391 + | quinone-reactive Ni/Fe hydrogenase HydC HPAG1_0617 645388 - 645924 + | quinone-reactive Ni/Fe hydrogenase HydD TERM 589 646592 - 646579 - g 79 -6.7 -4.61633 | overlap 646555 AGATACTTTCAAAAA CGATG AAAT CATCG CCCAGCTACCCTATG HPAG1_0618 645926 - 647464 + | hypothetical protein HPAG1_0619 647882 - 647469 - | hypothetical protein TERM 590 647765 - 647775 + g 71 -4 -4.88129 | overlap 647769 CATGGTTTTTATGGA GTTT GTA AAAC TTTTTACTGCTTTTT HPAG1_0620 648463 - 648011 - | hypothetical protein TERM 591 649063 - 649073 + G 79 -3.2 -5.45726 | TTCTGTTCCTGGCAG CGGT TTA ATCG TTTTTTTACCCTATG HPAG1_0621 648650 - 649573 + | outer membrane protein HopH HPAG1_0622 650326 - 649640 - | hypothetical protein HPAG1_0623 650389 - 651666 + | poly(A) polymerase HPAG1_0624 651674 - 651748 + | hypothetical protein HPAG1_0625 651763 - 652620 + | putative 3-hydroxyacid dehydrogenase HPAG1_0626 652622 - 652738 + | NAD(P)H-flavin oxidoreductase HPAG1_0627 652717 - 653274 + | NAD(P)H-flavin oxidoreductase TERM 592 653329 - 653312 - f 100 -11.3 -5.00765 | opp_overlap 653310 653312 653320 AACCAATCATAAAAA GCTTGGC GTTA GCCAAGC GCTAATCTCTTAAAT HPAG1_0628 653440 - 654759 + | glutamyl-tRNA synthetase HPAG1_0629 654756 - 655049 + | hypothetical protein TERM 593 655154 - 655144 - g 80 -2.4 -5.65177 | opp_overlap 655144 AGATTTAGAAAAAAA GCCC GCT GGGA TCGTTAGGGATTATT TERM 594 655848 - 655811 - g 70 -2.8 -5.00884 | gap 1, opp_overlap 655837, overlap 655820 ATTTTGCGCAAAAAA CCCTCTAAAGCGCTCAA GTATT TTGAACGC-TCAGAAGC GGTGGTTAAAGACGA HPAG1_0630 655058 - 656740 + | soluble lytic murein transglycosylase HPAG1_0631 656737 - 657558 + | UDP-glucose pyrophosphorylase HPAG1_0632 657569 - 657976 + | hypothetical protein HPAG1_0633 657979 - 659247 + | UDP-N-acetylglucosamine 1-carboxyvinyltransferase TERM 595 659262 - 659245 - f 71 -2.1 -5.45802 | gap 1, overlap 659249 CGTTTAAAAGAAAAA TAATCCAA GAT TTGG-TTA CAATAGCTAGAATAT TERM 596 659480 - 659461 - g 85 -7 -5.15969 | GCTCAAGTCAAAAAA GCGGCCGC TTTA GCGAACGC GCAATTAGGCTTGAT aspA 659305 - 660711 + | aspartate ammonia-lyase TERM 597 660744 - 660763 + G 70 -7.8 -3.63744 | overlap 660742 CGCCTTCAAACTTTA CGCTCCCT TTAT ATGGAGCG TCTTTTGGGCGAAAC HPAG1_0635 660717 - 661346 + | hypothetical protein HPAG1_0636 662590 - 661355 - | alpha 1,3-fucosyltransferase TERM 598 661700 - 661666 - G 73 -7.4 -4.07568 | opp_overlap 661654, overlap 661667 TGTCGTTTTCTAAAA TCGTTTTAAAAAAATC CAG GATTTTTTTAAAACTC AAATCTTGGTAAAAG TERM 599 661699 - 661667 - G 78 -10.9 -3.04398 | opp_overlap 661654, overlap 661666 GTCGTTTTCTAAAAT CGTTTTAAAAAAATC CAG GATTTTTTTAAAACT CAAATCTTGGTAAAA TERM 600 662584 - 662595 + g 73 -5.8 -4.56597 | opp_overlap 662583 AATCTCCCCACCAAT TCGC CACA GCGA TTTTTAGGGGGGGGG HPAG1_0637 663344 - 662721 - | phosphoserine phosphatase HPAG1_0638 663862 - 663359 - | nonheme iron-containing ferritin TERM 601 664123 - 664102 - H 70 -3.8 -5.12474 | TATAATATATAAAAA GCATTCTT CAATCT AAAAATGC TACAATGTTTATCTT TERM 602 664333 - 664352 + G 72 -4.4 -4.72556 | gap 1, opp_overlap 664333, overlap 664328 TAAACCCTAGCAATA TTTGCACAG ACG CT-TGCAAA TTTTGTGCTTTTTCA TERM 603 664568 - 664579 + G 76 -4.4 -5.1615 | overlap 664578 AAAGGCCATGACCGC TGCA GAAG TGCA TTTTTTAAGTGTTAA HPAG1_0639 664161 - 665243 + | hypothetical protein TERM 604 665875 - 665861 - gf 71 -6.4 -4.16279 | opp_overlap 665861, overlap 665873 TAGAGCATGCTAAAA CGGCTT TAA AAACCG CTTTAGAGGGGCAGG TERM 605 667088 - 667100 + GF 71 -7.7 -3.5394 | ATAACTTGAACGTTA CCAAG CTC CTTGG TTTCAGCAGCCCTTT TERM 606 667805 - 667793 - gf 71 -6.2 -4.14392 | opp_overlap 667793 TCTTAACCTTTAAAA CCCC AACTA GGGG GAGTTTCTTCTATAA HPAG1_0640 665326 - 668076 + | protective surface antigen D15 HPAG1_0641 667988 - 669139 + | hypothetical protein HPAG1_0642 669145 - 670443 + | processing protease TERM 607 671268 - 671283 + G 72 -3.2 -5.1356 | opp_overlap 671268, overlap 671270 CGCTATTTTAAAGAT CCGGAT TTGT ATCCTG TTTTTATTGATGAAA gatB 670440 - 671867 + | aspartyl/glutamyl-tRNA amidotransferase subunit B TERM 608 672899 - 672909 + G 71 -6.8 -4.10007 | GTCTTTATTTCGCAT GAGC AAG GCTC TTTTACGCCCGTTAT HPAG1_0644 671867 - 673111 + | hypothetical protein TERM 609 673145 - 673157 + G 71 -4.9 -4.59081 | CTTCAATTTCCTCTA TAAAG ATT CTTTA TTTTCTATCGCTTTA HPAG1_0645 673122 - 674138 + | hypothetical protein rnhA 674125 - 674556 + | ribonuclease H TERM 610 674893 - 674910 + G 71 -7.1 -3.96148 | AAGATTATTTGCGCG TTTCTTC TTCT GAAGAAA TTTCTAATGGGAGAG rnc 674565 - 675287 + | ribonuclease III TERM 611 675887 - 675871 - g 80 -6.5 -4.75404 | overlap 675860 675859 AAACGCTATCAAAAA CCACGAT AGC ATCGGGG GCGTGGCTTTGATTA HPAG1_0648 675284 - 676381 + | chorismate synthase TERM 612 676670 - 676658 - g 75 -7.7 -3.98009 | AGAAAACGCCAGAAA GGCTT TTG AAGCC AGGCTCAGGGCGGAA HPAG1_0649 676419 - 676934 + | hypothetical protein TERM 613 677270 - 677284 + G 79 -3.5 -5.41746 | gap 1, overlap 677270 CAATTCCACTATGGA GG-CGG CACG CCGACC TTTTTTTCGCCCATT HPAG1_0650 676934 - 678307 + | coproporphyrinogen III oxidase TERM 614 678811 - 678797 - g 89 -5.8 -5.37593 | overlap 678790 CTTTAAATCAAAAAA GTTTTT TAC AAAAAC ATGCAGAAATGAAGC TERM 615 679254 - 679244 - g 89 -6.8 -5.24129 | GTCTTTTAGAAAAAA TCCC TAA GGGA AAAAAAGAGGCTATC HPAG1_0651 678304 - 679605 + | glycerol-3-phosphate dehydrogenase TERM 616 679921 - 679903 - gf 71 -6 -4.20148 | overlap 679905 ACGACTTCAAAAGAA TACATCGC CGT GCAATGCA AATTCCATCAAAATA HPAG1_0652 679681 - 680334 + | hypothetical protein TERM 617 681441 - 681452 + GF 71 -3 -5.14563 | overlap 681436 GATGTCCCAGCGCTT GATA GCGT TATC TTTTTTGATGGCAAA TERM 618 683063 - 683078 + GF 91 -7.6 -5.24531 | TAGCGGATCGAGAGC GACGAT AGCG ATCGTC TTTTTTGTGAAAGAT TERM 619 683770 - 683785 + GF 72 -3.2 -5.04733 | overlap 683771 ATGGTAAGGATTTTA GCGCTT TGGT AAGCGA TTTTATTTCTGATTG HPAG1_0653 680286 - 684455 + | hypothetical protein HPAG1_0654 684699 - 685511 + | outer membrane protein HorF TERM 620 685529 - 685554 + F 80 -7.7 -4.20516 | overlap 685530 TAAAACGCTTGTTTT TCTCTAATTGA ATTT TCAATTAGAGC TTTCTTGCCTAGACC TERM 621 685530 - 685553 + F 84 -11.2 -3.11988 | overlap 685529 AAAACGCTTGTTTTT CTCTAATTGA ATTT TCAATTAGAG CTTTCTTGCCTAGAC TERM 622 685578 - 685598 + F 82 -6.3 -5.055 | opp_overlap 685589, overlap 685575 CTAGACCACCGCTTT CTTTTGAAA CAT TTTTAAAAG TTTTTTGAAAATTAG HPAG1_0655 685670 - 686842 + | aspartate aminotransferase TERM 623 687004 - 687025 + G 100 -8.9 -6.09196 | GATTTGGGGTTATCT TTATCGATA ATAA TATCGATAA TTTTTTTATTTTAGA HPAG1_0656 686979 - 687929 + | hypothetical protein HPAG1_0657 687947 - 688813 + | hypothetical protein HPAG1_0658 688821 - 689891 + | integrase-recombinase protein HPAG1_0659 690460 - 689954 - | methylated-DNA--protein-cysteine methyltransferase TERM 624 690159 - 690177 + g 76 -2.4 -5.46706 | overlap 690160 GGGTTATTAATGAGC TTTGCGAT TTC ATCGTAAC TTTTTGTTTTACCAT HPAG1_0660 691231 - 690464 - | hypothetical protein TERM 625 691134 - 691119 - G 73 -6.8 -4.17762 | overlap 691103 GATTCTTCAAAAGAA TGCCCG GTTG CGAGCA TGATAGGGACAATGA HPAG1_0661 692292 - 691345 - | putative lipopolysaccharide biosynthesis protein TERM 626 691836 - 691846 + g 72 -3.2 -5.04175 | overlap 691830 GCGTGATGTCAAACA CCTT GCT AGGG TTTTTGTCTAATTCA HPAG1_0662 694720 - 692354 - | ribonucleotide-diphosphate reductase subunit alpha TERM 627 692879 - 692891 + g 70 -9.1 -3.23711 | opp_overlap 692878 ATTGGCTTTATCAAT GGGGA AAA TCCCC TTACTCCATTCTGAA TERM 628 694497 - 694480 - G 87 -3.4 -5.75478 | AATCATACAAAAAAA GCCTTG AGGCGA CAAAGC TCCAATTAGGCGTGT TERM 629 694832 - 694845 + r 75 -2.5 -5.60993 | TAATGAGAATGGGTT TTAAA GTTT TTTAA TTTTTTTATACCCCC HPAG1_0663 695380 - 694886 - | hypothetical protein HPAG1_0664 695860 - 695420 - | hypothetical protein TERM 630 696034 - 696074 + r 75 -2.8 -5.62552 | gap 1, opp_overlap 696020 696034 696043, overlap 696043 AGGTTTCTTAAAAAA CTTAAAATACCCATTTTCA ATAA TAAGAATGGGT-TTTAAAG TTTTTTAATTTTTTT HPAG1_0665 696629 - 696123 - | hypothetical protein HPAG1_0666 697049 - 696669 - | hypothetical protein HPAG1_0667 698506 - 697205 - | UDP-N-acetylglucosamine pyrophosphorylase TERM 631 698643 - 698655 + G 76 -9.1 -3.65902 | opp_overlap 698643 TATGCCCTTTAATGA GCGCT GAT AGCGC TTTGCCTAGCGTCAA TERM 632 698785 - 698803 + G 76 -2.4 -5.42198 | gap 1, overlap 698778 AGTGATGACGAGTTT CACC-CG TTTGAT CGTGGTG TTTTCTTTTTTAAGG fliP 698588 - 699334 + | flagellar biosynthesis protein FliP HPAG1_0669 701676 - 699373 - | iron(III) dicitrate transport protein TERM 633 700413 - 700394 - G 70 -2.8 -5.05116 | gap 1, overlap 700395 TTAGAAAGAACAAAA GGAGGCATG CGG CACACC-CC ATTAAAAATATCCGC TERM 634 701911 - 701898 - R 83 -6.7 -4.78326 | opp_overlap 701898 TTTTAAACAAATAAA GGGTT TTTA AACCC TTTTATGGCTAGGCT TERM 635 701898 - 701911 + r 78 -6.7 -4.42653 | opp_overlap 701898 TTTTAAACAAATAAA GGGTT TTTA AACCC TTTTATGGCTAGGCT HPAG1_0670 703861 - 701927 - | iron(II) transport protein TERM 636 703593 - 703579 - G 72 -10 -2.73619 | overlap 703578 AATTACGCTCTAAAT TGGTGG AAT CCACCA CATTAAGAATGAGAT HPAG1_0671 703975 - 704805 + | hypothetical protein HPAG1_0672 704859 - 706073 + | putative type II cytosine specific methyltransferase HPAG1_0673 706076 - 706948 + | putative type II restriction enzyme HPAG1_0674 707082 - 707441 + | hypothetical protein TERM 637 707971 - 707961 - g 84 -6.8 -4.98255 | CCCGAATGACAAAAA CGCT TTT AGCG TCAATATGGTTTGTG HPAG1_0675 707722 - 708897 + | acetyl coenzyme A acetyltransferase HPAG1_0676 708908 - 709606 + | succinyl-CoA-transferase subunit A TERM 638 709815 - 709833 + G 76 -4.4 -5.14563 | overlap 709819 AAAGGAAACCATAAC CGTGGTGC CGG GCGCTTCG TTTTTTAATAGCGCG HPAG1_0677 709603 - 710226 + | succinyl-CoA-transferase subunit B TERM 639 710363 - 710389 + G 71 -6.6 -4.05446 | TTCTTGTTTATTGCT TGACAGGGCAAG ACG CTTTTTCTGTCA TTTCTAGTTGGGGGA HPAG1_0678 710245 - 711609 + | short-chain fatty acids transporter HPAG1_0679 711734 - 712735 + | putative outer membrane protein TERM 640 713528 - 713518 - g 84 -6.8 -4.87786 | GCAATCTCATAAAAA CGCT GAA AGCG AGCGGATCGTTAGAG HPAG1_0680 712970 - 715111 + | hydantoin utilization protein A HPAG1_0681 715123 - 717420 + | N-methylhydantoinase TERM 641 717790 - 717761 - g 79 -10.1 -3.60296 | gap 1, opp_overlap 717752 717750 717750 717763 GAGGTGTATCCTAAA CTCTTAGCCAGTGA TAC TCACTGGC-AAGTG TATCGGGAGTATATT TERM 642 717763 - 717788 + G 80 -11.3 -2.88249 | gap 1, opp_overlap 717761, overlap 717752 717750 717750 GGTGTATCCTAAACT CTTAGCCAGTGA TAC TCACTGGC-AAG TGTATCGGGAGTATA HPAG1_0682 717431 - 717937 + | hypothetical protein TERM 643 717961 - 717975 + F 70 -7.1 -3.57561 | opp_overlap 717961, overlap 717949 AATCCTTTTTATGAA GAGGC TTTAT GCCTC TTTGACGCATTAAAA TERM 644 718014 - 717992 - f 83 -7 -4.7497 | TTGACGCATTAAAAA GCTTGGGTTA ATT CAACTCAAGC AAATTCTTTCAATCC HPAG1_0683 718125 - 718316 + | hypothetical protein TERM 645 718497 - 718514 + G 74 -4.1 -5.0538 | overlap 718512 GGGATTGTAGGCGCT CCTTTTG AATG CGAAGGG TTTTTTAAAATCGCA HPAG1_0684 718326 - 719354 + | hypothetical protein TERM 646 719380 - 719404 + G 80 -2.3 -5.55769 | gap 1, opp_overlap 719380 719390 719401, overlap 719380 719401 CCCCCCAAAGCTAAA GGG-TTTAAA CGCCTT TTTAAAGCCC TTTTTTATTCTAAAG TERM 647 719662 - 719690 + G 70 -3.1 -4.86731 | opp_overlap 719652, overlap 719662 GACATGGCCAGTGCA GCCCAACTGATAG GGC TTATTTTTTGGGC TTTTGTTTGGGGGCA HPAG1_0685 719347 - 719733 + | diacylglycerol kinase TERM 648 720542 - 720527 - g 70 -3.3 -4.94811 | CGAAAAATAAAGAAA TCATC GTTTTA GATGA AATGCCTTTCCAAAC TERM 649 721378 - 721392 + G 75 -2.8 -5.28176 | opp_overlap 721380, overlap 721380 AGCACTTATGAAGAC GATTTC ATT GAAAAC TTTTTTGTGGCTAAC HPAG1_0686 719749 - 722232 + | DNA gyrase subunit A HPAG1_0687 722229 - 722705 + | hypothetical protein TERM 650 723351 - 723332 - g 74 -4.9 -4.72272 | overlap 723313 723334 TTTGGGTATCAAAAA GGGGCGT TCACGG ACGCCAC AGCCCCTAAAATGGG HPAG1_0688 722702 - 723847 + | transcriptional activator of flagella proteins HPAG1_0689 723974 - 724504 + | hypothetical protein TERM 651 724618 - 724649 + T 86 -9.8 -4.05714 | GCTCTTTACTATTGA TTATAAAAAATGTT TTTT AGCATTTTTTATAA TTTATGATTAACACT uvrA 727573 - 724748 - | excinuclease ABC subunit A TERM 652 725568 - 725580 + g 78 -2.7 -5.44721 | overlap 725569 ACAATCTCCACCCCA TTCAA GCT TTGAG TTTTTTTAGCATGGT TERM 653 726207 - 726176 - G 90 -3.8 -5.94713 | overlap 726178 ATCGTATAAAAAAAA CACCCTTTCTAAAA TCTC TTTTAAAATGGGTT CAGCGATCTTTTTTT TERM 654 726205 - 726178 - G 77 -6.4 -4.62054 | overlap 726176 CGTATAAAAAAAACA CCCTTTCTAAAA TCTC TTTTAAAATGGG TTCAGCGATCTTTTT TERM 655 727387 - 727367 - G 80 -6.1 -4.66609 | CACTTTATCTAAAAA TTGCCTAGC ATA GCTGGACAA ACTCTCTAAATAGCG HPAG1_0691 727738 - 728559 + | outer membrane protein HopE TERM 656 728573 - 728561 - f 71 -7.7 -3.56821 | opp_overlap 728552 728559 728557 728561, overlap 728552 ACTACACTTTTTAAA CCCTT TAA AAGGG TATCTTTAAGCCCTT TERM 657 728584 - 728608 + F 80 -7.3 -4.59424 | AAGGGTATCTTTAAG CCCTTTTTA GTCCTTA TAAAAAGGG TTTTAGTTTGGATTT mraW 728737 - 729663 + | S-adenosyl-methyltransferase MraW HPAG1_0693 729684 - 730028 + | hypothetical protein HPAG1_0694 730184 - 731086 + | hypothetical protein HPAG1_0695 731310 - 733313 + | putative outer membrane protein HomB HPAG1_0696 733504 - 734724 + | hypothetical protein HPAG1_0697 734724 - 734972 + | hypothetical protein TERM 658 735005 - 735020 + G 71 -6.8 -4.07885 | TTAATGAATTTTTTA CTCCCT AATA AGGGGG TTTTCAAAACGGCTG TERM 659 735173 - 735158 - g 87 -4.8 -5.42164 | GATAAAGAAGAAAAA CTAAAA GCCA TTTTAG AACAACACATTTTGT HPAG1_0698 734978 - 735427 + | hypothetical protein HPAG1_0699 736683 - 735439 - | RNA polymerase factor sigma-54 TERM 660 735523 - 735540 + g 70 -2.7 -5.10461 | overlap 735525 GGTGATCGTTCTTCT TACCATT TTCA AATGGAA TTTTTCTTCAATGAG HPAG1_0700 737408 - 736686 - | ABC transporter, ATP-binding protein TERM 661 737348 - 737362 + g 83 -3.6 -5.62219 | CTTCTAAAGAAACAT CTGAAA CGA TTTTAG TTTTTTTAATCTGTT HPAG1_0701 737822 - 737421 - | hypothetical protein TERM 662 737496 - 737506 + g 78 -2.6 -5.47914 | AATAGCTAAATCGTA TTTT TTT AAAA TTTTTTCTAATTTTT HPAG1_0702 739537 - 737819 - | DNA polymerase III subunits gamma and tau TERM 663 738522 - 738538 + g 86 -9.5 -4.05629 | overlap 738531 ATCGCATCGTCTAGA GCTTTGA GTT TCAAAGC TTCTTTGAATTTCAT TERM 664 738531 - 738547 + g 77 -8.1 -4.21922 | overlap 738522 TCTAGAGCTTTGAGT TTCAAAG CTT CTTTGAA TTTCATTTTCAATAA TERM 665 738914 - 738928 + g 75 -5.6 -4.83169 | overlap 738916 738920 738924 CCTCAAGCTCCCTTG CCCGCT GTG AGCGAG TTTTTCTAACGCGCT HPAG1_0703 740238 - 739606 - | hypothetical protein TERM 666 739662 - 739646 - G 74 -6.5 -4.4448 | AAATCCCTAAATAAA GTAACGC TAA GCGTTCC CATGATAGCGGTTAC TERM 667 740629 - 740607 - g 72 -9.2 -3.30619 | opp_overlap 740610 740613 AAGGAGCTTTTAGAA TTAGCAGGCA CTC TGCCTTCTAA TGAAGCGATTGATTA HPAG1_0704 740445 - 740930 + | hypothetical protein TERM 668 741404 - 741381 - g 89 -6.8 -5.2166 | gap 1, overlap 741383 GAACAAGGCAAAAAA GACCACGATCA CAA TGATCATGG-C GAAAATGAAAAATAA TERM 669 741403 - 741383 - g 89 -10.5 -4.21792 | overlap 741381 ACAAGGCAAAAAAGA CCACGATCA CAA TGATCATGG CGAAAATGAAAAATA HPAG1_0705 740958 - 741419 + | hypothetical protein TERM 670 741466 - 741504 + F 75 -9.6 -2.80017 | opp_overlap 741450 741473, overlap 741465 741480 CTTCAAACCCTTTAA GCAGAAATCCTAAACGCT TTG AGCGTTTGGGATAAATGC GTTCTGTTAAGCGTT TERM 671 741497 - 741473 - f 100 -11.5 -4.05446 | opp_overlap 741466 741465 741480 CCCTTTAAGCAGAAA TCCTAAACGCT TTG AGCGTTTGGGA TAAATGCGTTCTGTT HPAG1_0706 741785 - 743638 + | outer membrane protein SabB HPAG1_0707 745036 - 743705 - | anaerobic C4-dicarboxylate transporter TERM 672 744074 - 744060 - G 74 -4.2 -5.1675 | opp_overlap 744060 TCAGCGATCAAAAAA GAAGCG TAT CGCTTG ATTTCATCTATATGA TERM 673 744759 - 744741 - G 74 -3.9 -5.03715 | gap 1, overlap 744743 AGTATCGTTAAAAAA TA-CGCCA CGCT TGGCGCTA AATAGTTGATTTGCT TERM 674 744756 - 744743 - G 77 -8.1 -4.14633 | overlap 744741 TATCGTTAAAAAATA CGCCA CGCT TGGCG CTAAATAGTTGATTT TERM 675 744782 - 744792 + g 70 -2.6 -5.03747 | GATTTGCTTGGGGTG TTTT CTT AAAA TTTTTTCAGCGATTT HPAG1_0708 745165 - 746163 + | L-asparaginase II TERM 676 746173 - 746211 + T 100 -12 -5.098 | opp_overlap 746181 746186, overlap 746169 746178 TATTAAACGATTTTC TTAGATTACCCAATTATC AAA GATAATTGGGTGATTTGG TTTATTTTGTTTTTG TERM 677 746178 - 746206 + T 100 -14.1 -4.33487 | opp_overlap 746181 746186, overlap 746173 746169 AACGATTTTCTTAGA TTACCCAATTATC AAA GATAATTGGGTGA TTTGGTTTATTTTGT TERM 678 746203 - 746181 - T 100 -13.6 -2.62396 | opp_overlap 746178 746173 746169, overlap 746186 GATTTTCTTAGATTA CCCAATTATC AAA GATAATTGGG TGATTTGGTTTATTT HPAG1_0709 748258 - 746303 - | outer membrane protein SabA HPAG1_0710 749385 - 748468 - | outer membrane protein TERM 679 749014 - 749004 - GR 78 -6.8 -4.36914 | TGGCTTGGGATAAAA GGGT ATT ACCC CCCACTTTTTGACCC TERM 680 749357 - 749346 - GR 78 -3 -5.41746 | overlap 749350 AACTCGCTAAAAAAA TGAA CGCT TTCA AACGCTTTTTTGATT HPAG1_0711 750341 - 749355 - | transcriptional regulator HPAG1_0712 751451 - 750435 - | hypothetical protein HPAG1_0713 752554 - 751487 - | hypothetical protein TERM 681 752012 - 751990 - G 72 -3.4 -5.1615 | overlap 751981 752010 752011 GTAAGAGGTAAAAAA GCCTTTTGCC AAA AACAAAACGC ATGAAATTTTCTTGC TERM 682 752028 - 752010 - G 78 -3.8 -5.26119 | overlap 751990 752011 TTGCCAAAAACAAAA CGCATGAA ATT TTCTTGCA TGGTTAAATATTCTT HPAG1_0714 752868 - 752563 - | hypothetical protein TERM 683 752841 - 752816 - G 71 -6.3 -4.15222 | opp_overlap 752803, overlap 752818 ATGCGTTTGAATAAA GAGCTTTTAAA CGCG TTTAAAAGCTT AAGAGTTGGGCAAAT TERM 684 752839 - 752818 - G 76 -8.9 -3.6761 | opp_overlap 752803, overlap 752816 GCGTTTGAATAAAGA GCTTTTAAA CGCG TTTAAAAGC TTAAGAGTTGGGCAA TERM 685 752923 - 752897 - R 79 -10.2 -2.8434 | opp_overlap 752897, overlap 752896 752894 752917 AAAGATTTAAAACAC CGCTTACTAGCC AAA AACTAGCAAGCG TTCTAGCGTTGGCAC HPAG1_0715 754678 - 752960 - | hypothetical protein TERM 686 753052 - 753063 + g 89 -5.8 -5.4477 | overlap 753061 TTTCCAGACCTTGAG CGCA CTCT TGCG TTTTTTTAACGCTTT TERM 687 753158 - 753172 + g 71 -5 -4.5448 | overlap 753140 753164 GGTTTCATCGTTGAT GAGATC CAA GATTTC TTGTTTTTGTCCGTC TERM 688 753164 - 753175 + g 74 -4.4 -4.87665 | overlap 753140 753158 ATCGTTGATGAGATC CAAG ATTT CTTG TTTTTGTCCGTCAAA TERM 689 754057 - 754076 + g 78 -2.9 -5.47846 | TTAAAGAAATCAGCT CATTCAG TCGGTT TTGAATG TTTTCTTTTTTGATT TERM 690 754088 - 754098 + g 71 -4 -4.83722 | AATGTTTTCTTTTTT GATT TTA AATC TTTTGTTGTAATCTT HPAG1_0716 755430 - 754675 - | hypothetical protein HPAG1_0717 756550 - 755492 - | hypothetical protein HPAG1_0718 757956 - 756637 - | hypothetical protein TERM 691 757000 - 756988 - G 72 -9.1 -3.33434 | AGCAAAAATATTCAA CCGGT CAA ACCGG AACTCGTCCAAAAAC HPAG1_0719 758419 - 757958 - | xanthine guanine phosphoribosyl transferase HPAG1_0720 759537 - 758428 - | phosphoserine aminotransferase TERM 692 758738 - 758751 + g 73 -2.3 -5.25893 | opp_overlap 758747, overlap 758749 AAAACGGCTTTTTGA GTGGC TAAA GCGAC TTTTTTAGTCTCTCT TERM 693 759007 - 759020 + g 71 -6.7 -4.06687 | opp_overlap 758983 759006 ACTCCCTCCAATGAG CGCAT CAAC ATGCG TTATTTCTAAAGGCT TERM 694 759096 - 759107 + g 85 -5.8 -5.24531 | GGTTAGTTTCTTTAA TCGC TTGA GCGA TTTTTTCTACAGGGT TERM 695 759760 - 759750 - g 72 -3.2 -5.0538 | GGGTATTCTAAAAAA GCTC CTG GAAC GATAGGGAGTTTAGT HPAG1_0721 759687 - 760163 + | phosphatidylglycerophosphatase A TERM 696 760336 - 760346 + G 78 -2.6 -5.47218 | GTTAAAGGATAGGAT TAAA TAT TTTA TTTTTTTAGATGAAA TERM 697 760909 - 760923 + G 79 -5.8 -4.84527 | opp_overlap 760908 AGCCGGTTGCAAGAT CAAAAA GGA TTTTTG TTTTTCCTATGTGGA ddl 760241 - 761284 + | D-alanyl-alanine synthetase A TERM 698 761504 - 761494 - g 75 -5.4 -4.81083 | overlap 761496 CCTAACGATGAAAAA GTCT TAG AGAC TAAAGATTATGCTAA HPAG1_0723 761284 - 762009 + | 2-hydroxy-6-oxohepta-2,4-dienoate hydrolase TERM 699 763158 - 763146 - g 78 -4.1 -5.29385 | AAGTGAATCAAAAAA TCATC ATA GACGA TAGCTTTAATGGGAA HPAG1_0724 761996 - 763477 + | UDP-MurNac-pentapeptide presynthetase HPAG1_0725 763487 - 763972 + | histidine triad (HIT) family protein TERM 700 764467 - 764443 - g 72 -8.7 -3.46138 | opp_overlap 764440 AAAGGATCATTACAA TGGATTTGC ATGCCGG GCAAATCCA AGGCTTTTTTGATGT HPAG1_0726 764037 - 764993 + | ribose-phosphate pyrophosphokinase HPAG1_0727 766199 - 765054 - | rod shape-determining protein HPAG1_0728 766842 - 766222 - | hypothetical protein TERM 701 766915 - 766926 + r 72 -7.2 -3.80279 | TTGGACAAACGCCTC GCCG GCTT CGGC TTATGTGTTTGTGGA HPAG1_0729 767435 - 766980 - | hypothetical protein HPAG1_0730 767571 - 768554 + | hypothetical protein HPAG1_0731 768505 - 769764 + | hypothetical protein TERM 702 769818 - 769836 + G 86 -4.5 -5.50723 | opp_overlap 769817 769819, overlap 769819 TTAAACCTTTAAAAT ACCCCTT AATTG AAGGGGA TTTTTGTTTTCATAA TERM 703 769819 - 769835 + G 73 -8 -3.88807 | opp_overlap 769819 769817, overlap 769818 TAAACCTTTAAAATA CCCCTT AATTG AAGGGG ATTTTTGTTTTCATA TERM 704 769835 - 769819 - g 70 -8 -3.68071 | opp_overlap 769818 769819, overlap 769817 TAAACCTTTAAAATA CCCCTT AATTG AAGGGG ATTTTTGTTTTCATA trmB 769775 - 770956 + | tRNA (guanine-N(7))-methyltransferase HPAG1_0733 770953 - 771624 + | cell division protein HPAG1_0734 771611 - 772417 + | cell division membrane protein TERM 705 773363 - 773347 - g 71 -5.1 -4.59773 | overlap 773349 CGCTAGTGTCAAAAA CCCCAAA CGC TTTGGTG CGTAATGTTTTAGAC HPAG1_0735 772410 - 773612 + | hypothetical protein HPAG1_0736 773705 - 774064 + | flagellar protein FlaG fliD 774081 - 776138 + | flagellar capping protein fliS 776178 - 776558 + | flagellar protein FliS HPAG1_0739 776545 - 776784 + | hypothetical protein HPAG1_0740 776837 - 777496 + | molybdopterin biosynthesis protein HPAG1_0741 777468 - 777671 + | hypothetical protein TERM 706 777794 - 777771 - g 86 -4.7 -5.43866 | gap 1, opp_overlap 777775 CAAGCGCTAAAAAAA CACC-CTAAA ACCAA TTTAGTGGTG TTGCAAGAATTAAAC HPAG1_0742 777675 - 778553 + | carbon-nitrogen hydrolase TERM 707 778610 - 778634 + F 93 -11.6 -3.72037 | opp_overlap 778626, overlap 778619 778624 778625 CATGGTAGGTGTAAT TTTTTGCGCT AAACA AGCGCAAAAA TTCTATCATTTTTGC TERM 708 778651 - 778626 - f 89 -10.6 -3.90744 | opp_overlap 778610 778625 778624 778619 TTTTGCGCTAAACAA GCGCAAAAAT TCTATC ATTTTTGCGC GGTATATTTATTTTA HPAG1_0743 778680 - 779993 + | hypothetical protein HPAG1_0744 780056 - 781309 + | hypothetical protein HPAG1_0745 782899 - 781310 - | phosphodiesterase HPAG1_0746 783446 - 782799 - | hypothetical protein HPAG1_0747 783571 - 784128 + | hypothetical protein HPAG1_0748 784134 - 785015 + | signal recognition particle receptor HPAG1_0749 785338 - 785024 - | hypothetical protein HPAG1_0750 786377 - 785397 - | hypothetical protein TERM 709 786214 - 786231 + g 79 -5.5 -4.93547 | opp_overlap 786214 786216, overlap 786216 786227 GCTAACTTGCAATCA GACTGAG TAGA CTCAGCC TTTTTGGTTGCTTCC HPAG1_0751 786632 - 786417 - | hypothetical protein HPAG1_0752 788240 - 786690 - | hypothetical protein TERM 710 787241 - 787219 - G 72 -8.4 -3.48924 | GCATTTGCCACACAA GCACCCACAA TCA TCGCAGGTGC TGAGCCCTTGCCAAG moaA 789426 - 788461 - | molybdenum cofactor biosynthesis protein A TERM 711 788708 - 788687 - G 71 -5.2 -4.62302 | CAAGATTGGCAAAAA TCATCGCT ATGCGG AGCGATAA TGCCAAATTGATAGC TERM 712 789897 - 789875 - g 71 -6.4 -4.18018 | TTGTGGGATTCAAAA TTTTAGCGTA ATC TATGCTAAAA GCCCTACAAAAGAAC HPAG1_0754 789513 - 790118 + | molybdopterin-guanine dinucleotide biosynthesis protein A TERM 713 791058 - 791045 - g 73 -2.3 -5.23292 | opp_overlap 791045 791046, overlap 791040 TTATAGAAAATAAAA CGCTC GCTA GAGAG CTTTATAGAGATGTG flhB 790111 - 791187 + | flagellar biosynthesis protein FlhB HPAG1_0756 792011 - 791274 - | hypothetical protein HPAG1_0757 793328 - 792030 - | N-acetylmuramoyl-L-alanine amidase HPAG1_0758 794426 - 793335 - | hypothetical protein HPAG1_0759 795651 - 794443 - | tyrosyl-tRNA synthetase TERM 714 795278 - 795291 + g 81 -6.7 -4.80882 | opp_overlap 795277 795278 CAAGCGGAATTAAAG CACAC CTCG GTGTG TTTTTCATCTAAAAT HPAG1_0760 798002 - 795675 - | penta-phosphate guanosine-3'-pyrophosphohydrolase HPAG1_0761 798213 - 797989 - | DNA-directed RNA polymerase subunit omega pyrH 798978 - 798256 - | uridylate kinase TERM 715 798569 - 798559 - G 84 -8.2 -4.66163 | ATCCGTAGTGAAAAA CGGG TTT CCCG TGCCTGCGCCAAAAA HPAG1_0763 799770 - 799087 - | hypothetical protein TERM 716 799475 - 799490 + g 73 -5.4 -4.55295 | opp_overlap 799488, overlap 799471 799488 AGCGCTTGAGAGAGG GCGTTT GAAG AAGCGC TTTCTTTATCAAAAG TERM 717 799488 - 799507 + g 72 -3.6 -5.08824 | opp_overlap 799488, overlap 799475 799471 GGGCGTTTGAAGAAG CGCTTT CTTTATCA AAAGCG TTTTTTGCATCCACA TERM 718 799980 - 799932 - g 85 -2.5 -5.70829 | gap 2, overlap 799944 799946 AAGATTACAAAAAAA GCGTTTCAGAAAGAGAGAGCGAG GGTAT CCCGC-CACTCCCTTT-AAACGC TAAACAAGTGGAGTC TERM 719 801814 - 801803 - g 81 -5.8 -5.04385 | GAGACTTTGAAAAAA CGCA GAGA TGCG ATGCAAGCTTGGGTG HPAG1_0764 799898 - 802459 + | bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase TERM 720 802472 - 802493 + F 87 -10.3 -3.71873 | opp_overlap 802477, overlap 802477 TAGTTTTGTTTTCAT TAAAAGGGA ATGA TCCCTTTTA TTTGGCTATGGCTGA TERM 721 802477 - 802488 + F 78 -5.8 -4.92385 | opp_overlap 802477, overlap 802472 TTGTTTTCATTAAAA GGGA ATGA TCCC TTTTATTTGGCTATG HPAG1_0765 802537 - 802806 + | hypothetical protein TERM 722 802832 - 802821 - f 73 -4.4 -4.93365 | overlap 802831 GGGGATAATCAAAAA CATG AAAG CATG CGCCATTCAATGATG HPAG1_0766 802875 - 803060 + | hypothetical protein TERM 723 804015 - 804035 + G 73 -8.3 -3.65353 | opp_overlap 804013 804015 ATCCTTTCTCAAATA GGGCTTTTA GAA TATAAGCCC TTTAAAATCCTTTCC TERM 724 804035 - 804015 - g 70 -8.3 -3.34517 | opp_overlap 804015, overlap 804013 ATCCTTTCTCAAATA GGGCTTTTA GAA TATAAGCCC TTTAAAATCCTTTCC HPAG1_0767 803088 - 804377 + | hypothetical protein TERM 725 804627 - 804617 - g 71 -6.8 -3.96618 | CTCAATTCCAAAGAA GGGA TTT TCCC TACAGCCACTTTTGT HPAG1_0768 804470 - 805837 + | outer membrane protein HofE TERM 726 805867 - 805891 + T 74 -6.5 -4.4715 | opp_overlap 805867, overlap 805851 GCTTGGTAGAATTGA GCCATTGTTTT TGG AAATTAATGGC TTTTCTCAATTCGGC HPAG1_0769 806371 - 805844 - | hypothetical protein TERM 727 806134 - 806151 + g 70 -2.7 -5.14965 | GCTTAGGCTCTAAAA TCAAGCG CAAA TGTTTGA TTTTTTCATGCAAAT TERM 728 806340 - 806330 - G 91 -8.2 -5.18371 | GCTCACAAAATAAAA GGGC AAC GCCC ACCTTCTAAAACGAG HPAG1_0770 806710 - 806841 + | hypothetical protein lolA 807410 - 806856 - | outer-membrane lipoprotein carrier protein secA 807558 - 810155 + | preprotein translocase subunit SecA TERM 729 810801 - 810811 + G 75 -8.2 -3.9712 | overlap 810779 TGCGATCAGGAGGTT GCCC TTA GGGC TTTATGATGGGGTGC TERM 730 811289 - 811309 + G 77 -6.1 -4.57882 | TGCTCACTTTAATAG GCTCTGTGA TCA TCGTAGGGC TTTCTTCTTATTACC HPAG1_0773 810145 - 811377 + | hypothetical protein TERM 731 812491 - 812507 + G 74 -5.1 -4.82548 | ATTTGGAATTACAAG GGTTGGA GCA TTCAGCC TTTTGTCTATTTTTC HPAG1_0774 811657 - 813156 + | outer membrane protein HofF TERM 732 813192 - 813169 - T 71 -7.6 -3.54935 | gap 1, opp_overlap 813175, overlap 813175 TAAACCCTCTTTAAA TAAC-AACCCT TTA AGGGTTTGTTA AAACGCCTAGCAAAA TERM 733 813175 - 813185 + T 71 -6.8 -4.15222 | opp_overlap 813175 813169 CTCTTTAAATAACAA CCCT TTA AGGG TTTGTTAAAACGCCT TERM 734 813185 - 813175 - T 71 -6.8 -4.08557 | opp_overlap 813175, overlap 813169 CTCTTTAAATAACAA CCCT TTA AGGG TTTGTTAAAACGCCT HPAG1_0775 814862 - 813528 - | putative type I restriction-modification enzyme specificity subunit S TERM 735 813588 - 813603 + g 70 -2.6 -5.08011 | CAATAGTTTTTCTCG GTAATA TTCG TATTGC TTTTTTCGGGCTTTT TERM 736 814661 - 814673 + g 70 -2.7 -5.07011 | CGTTTTTACTCGCTT GATAA ATA TTGTC TTTTTCGTTTGTATA HPAG1_0776 816963 - 814903 - | cadmium-transporting ATPase TERM 737 816470 - 816449 - G 82 -11.7 -3.01912 | TTAGAGCGAGAGATA GCGAGTTTT TGCA AAAACTCGC CCGCTGAATAAAACA TERM 738 816678 - 816652 - G 71 -3.7 -4.88228 | opp_overlap 816651 816652, overlap 816654 AGCCAACACGAAAAA CATAGCCTTTT CAATC AAAGGGCTAGG GTTTAGGTGCAAGAT TERM 739 816856 - 816873 + g 70 -2.7 -5.06451 | AAACAACTTACTGGT GCTAAAA TTGA TTTGAGC TTTTTTCACATAGTC HPAG1_0777 818508 - 816988 - | DNA transformation competence protein TERM 740 817352 - 817363 + g 70 -3.6 -4.9218 | opp_overlap 817350, overlap 817356 CTGTCTAAAAAAGGC TCGC TCAA GCGG TTTTTATACTGCATG TERM 741 817597 - 817584 - G 84 -2.4 -5.86965 | opp_overlap 817595 ATTCATCAAAAAAAA GCAT GCCGTT ATGC GCTAGCGCGATTTCG TERM 742 817956 - 817974 + g 73 -2.4 -5.22312 | CTTTATCGTTCAATT CTATCGTT TTA AAGGGTAG TTTTTTCGTGTGGGT def 819038 - 818514 - | peptide deformylase TERM 743 818593 - 818579 - G 73 -7.2 -4.09685 | TCTTACGCTTCAAAA TGGATA ATT TATCCA CGAATAACACGCCAT TERM 744 818992 - 818975 - G 80 -6.3 -4.72007 | opp_overlap 818975 TTGCATCAAAAGAAA CGACTTC TTTA GAAATCG TTCTTAAAATTTTAG clpP 819633 - 819043 - | ATP-dependent Clp protease proteolytic subunit tig 821006 - 819651 - | trigger factor TERM 745 819932 - 819922 - G 73 -5.4 -4.5442 | opp_overlap 819922 GCGTCAATGATAAAA GTGA TTT TCAC GCTTTTTGTGGCATC TERM 746 820564 - 820591 + g 81 -2.8 -5.5604 | gap 1, overlap 820552 820569 AATTTCGCATAATCT TTAGCGAGCTGTT TCA AAC-GCTCATTAA TTTTTTCTTCATTGG HPAG1_0781 821912 - 821118 - | outer membrane protein HorG HPAG1_0782 822761 - 821979 - | flagellar sheath adhesin moaC 823350 - 822874 - | molybdenum cofactor biosynthesis protein C mogA 823889 - 823359 - | molybdenum cofactor biosynthesis protein HPAG1_0785 824339 - 823902 - | molybdopterin converting factor, subunit 2 HPAG1_0786 824558 - 824340 - | molybdopterin converting factor, subunit 1 ribA 825215 - 824637 - | GTP cyclohydrolase II TERM 747 825110 - 825091 - G 74 -5 -4.82901 | overlap 825107 GGGTTTTGAGAAAAA TTAGGGGT GAAA ACCACTAA ATGATCTTTAGAGCC HPAG1_0788 826143 - 825304 - | hypothetical protein TERM 748 826047 - 826067 + g 87 -8.3 -4.62904 | opp_overlap 826047 826041 AAATAATAACGCAAA CCATCCAAA TCT TTTGGAAGG TTTTTAGGAATATTT TERM 749 826067 - 826047 - G 77 -8.3 -3.90086 | opp_overlap 826047, overlap 826041 AAATAATAACGCAAA CCATCCAAA TCT TTTGGAAGG TTTTTAGGAATATTT HPAG1_0789 827264 - 826230 - | bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein TERM 750 826464 - 826452 - G 72 -3.3 -5.07107 | TAAAGCCTTAAAAAA CGCTT CAA ACGCG CCAGTCGTTAAAAAA TERM 751 826495 - 826480 - G 70 -2.6 -5.02074 | CCAGTCGTTAAAAAA TCAAAA TCCT CTTTGA TAGGGTGGAAACGCA TERM 752 827451 - 827461 + r 77 -4 -5.33785 | TAATGTTTGCAAAGC CTAA TGA TTAG TTTTTTCTAATGATT HPAG1_0790 828342 - 827458 - | lipooligosaccharide 5G8 epitope biosynthesis-associated protein TERM 753 828568 - 828538 - g 76 -7.6 -4.20953 | overlap 828532 TTAAAAGAACAAGAA GCTTGGCTAAAAAA AAC CCTTTCAGCCATGC AAGAAAAATACTCGC TERM 754 828747 - 828772 + G 71 -7 -4.11751 | overlap 828748 AACTTCATACACCCA TTTTAGCGTT AGGAAC AACGCTAAAG TTTTGGGGAGTTGCT HPAG1_0791 828391 - 829011 + | hypothetical protein HPAG1_0792 831392 - 829014 - | iron(III) dicitrate transport protein TERM 755 831457 - 831478 + r 77 -3.9 -5.47399 | gap 1, opp_overlap 831463, overlap 831463 ATTATTATATCATCT TAAGAATTGA AAA TCAAT-CTTA TTTTTTTACAATTCG TERM 756 831480 - 831516 + r 72 -2.4 -5.32608 | opp_overlap 831491, overlap 831481 831482 831491 GAAAATCAATCTTAT TTTTTTACAATTCGTT ATCAA AACGATTTGAAAAAGG TTTTTTGCGTTTTTT acpS 831949 - 831590 - | 4'-phosphopantetheinyl transferase TERM 757 831898 - 831873 - G 89 -7 -5.24129 | opp_overlap 831873 831895 831896, overlap 831896 CTTGGGGATAAAAAA CGCTCTAAAA ACCTCA TTTTAAAGCG TTTTACGCACTTTTC fliL 832507 - 831956 - | flagellar basal body-associated protein FliL HPAG1_0795 833118 - 832516 - | hypothetical protein HPAG1_0796 833423 - 833097 - | hypothetical protein TERM 758 833427 - 833417 - G 78 -2.6 -5.47159 | overlap 833411 TGCAAGAAAGAAAAA TTTT CAA AAAA CCCCCTTTATCCCAT HPAG1_0797 834898 - 833888 - | hypothetical protein TERM 759 834139 - 834123 - G 78 -3.7 -5.33405 | CGCACCAAAGAAAAA TTGACAT CAT AGGTCAA ATCGCTTTGCTGATA HPAG1_0798 835032 - 835649 + | hypothetical protein TERM 760 835979 - 836011 + G 74 -6.4 -4.46212 | opp_overlap 835986 836003 AGAACGCTTTAAGGC TCATAACGCTCTTT CTCTT ATAGAGCCTTATGA TTTTATCATAGACGC TERM 761 836147 - 836163 + G 93 -10.1 -4.72272 | CGTTTTACCCCATAG CGCATGC TTA GCGTGCG TTTTTGATAAACCCC TERM 762 836387 - 836341 - g 76 -2.4 -5.44119 | gap 1, opp_overlap 836357, overlap 836326 836346 836357 TGGATTTTAAAAAAA TTCAAGCAC-CCAAAAACCCT GAATGT AGGGTTTGTGGCGCACATAAA ATCACGCATTTACAG HPAG1_0799 835650 - 836417 + | thiamine biosynthesis protein TERM 763 836887 - 836916 + G 86 -12.2 -3.34501 | opp_overlap 836875, overlap 836877 AAACGGCCGGCGAGA CCGCTCCTACTA TGGGGT TAGTGGGGGCGG TTATGGGGCTTATGT HPAG1_0800 836433 - 837206 + | flagellar motor protein MotA TERM 764 837676 - 837662 - g 75 -5.6 -4.7329 | opp_overlap 837661, overlap 837664 AAAATCATTCAAAAA CTCCCT AAA AGGGTG CATATTAATGTGAGA motB 837209 - 837982 + | flagellar motor protein MotB HPAG1_0802 837979 - 838425 + | hypothetical protein HPAG1_0803 838485 - 838616 + | osmoprotection protein TERM 765 838666 - 838690 + G 71 -6.4 -4.2408 | TTTATAGACTTGATC GCGCAGCATT TTATC ATTGTTGCGC TTTCTGGTTTTCTCG HPAG1_0804 838618 - 840156 + | osmoprotection protein HPAG1_0805 840158 - 840799 + | osmoprotection protein TERM 766 840816 - 840774 - f 80 -6.5 -4.88067 | gap 1 AGTTAGCCACAAAAA CCCTAGAAATCAAAGCCCTT AAAT AAGAGCCATGATTT-TAAGG CTGATTTAAAAATTC HPAG1_0806 840982 - 841443 + | hypothetical protein TERM 767 842569 - 842558 - g 76 -2.2 -5.4833 | TTAGCCAAGAAAAAA CCTC TGAT GAAG ATCTGATTTTAGAAG uvrC 841444 - 843228 + | excinuclease ABC subunit C HPAG1_0808 843239 - 844504 + | homoserine dehydrogenase HPAG1_0809 844504 - 844848 + | hypothetical protein HPAG1_0810 844937 - 845257 + | thioredoxin TERM 768 845330 - 845346 + G 90 -8.7 -4.86731 | opp_overlap 845328 TTATGCCACTAGAGG CGGTGTT AAA AACGCCG TTTTGTTTGAAAAAG TERM 769 845768 - 845791 + G 71 -6 -4.2349 | opp_overlap 845768 CATCTGCAAAAAAGT CTATCTCATC CACA GAAGAGATGG TTTTAGATGTGCACC HPAG1_0811 845262 - 846197 + | thioredoxin reductase TERM 770 846232 - 846204 - f 80 -10.4 -2.74415 | opp_overlap 846211, overlap 846203 CACCATTAAATCAAG CTCATGACCCTA GGTTT TAGGGTTATGAG TCCTCGCTTCAAACA TERM 771 846358 - 846344 - f 77 -4.4 -5.22943 | opp_overlap 846337 ATCAAATTTAAAAAA TTTTTA TTG TAAAAA CGAGCCTAAAAACGA HPAG1_0812 846407 - 847228 + | beta-1,4-galactosyltransferase HPAG1_0813 847679 - 847431 - | RNA binding protein TERM 772 847972 - 847960 - R 72 -4.9 -4.80453 | TTACCATAAAACAAA GTTTT AAA AAAAC AATATTAAAGCCAAA HPAG1_0814 848682 - 848002 - | F0F1 ATP synthase subunit A TERM 773 848716 - 848734 + r 85 -9 -4.10429 | opp_overlap 848730 848731, overlap 848731 CTTATTGAAAATTTC CTTAATTG TAG CAATTAAG TTTTAAAAACTCATT HPAG1_0815 850249 - 848804 - | inositol-5-monophosphate dehydrogenase TERM 774 848843 - 848856 + g 76 -6.7 -4.41348 | TTTAGTAATATCCAC GCCAT GCAC ATGGC TTTCTTTCAGCCCCG gatA 851620 - 850259 - | aspartyl/glutamyl-tRNA amidotransferase subunit A TERM 775 851040 - 851026 - G 85 -7.2 -4.86731 | opp_overlap 851025 851028 TGGCGTCAAATAAAA TAGAAG CGT CTTCTA CATTTTGCGTGATAG TERM 776 851245 - 851255 + g 72 -3.2 -5.00895 | CTCCACTACTCCCTC CAGG CAC TCTG TTTTTGTCTCGTGGG coaE 852270 - 851680 - | dephospho-CoA kinase TERM 777 851757 - 851769 + g 74 -4.7 -4.86133 | opp_overlap 851757 TGTCTATAATATAAT CGCTC ATG GCGCG TTTTTGCTCTATATC speE 853060 - 852272 - | spermidine synthase TERM 778 852873 - 852885 + g 76 -9.1 -3.70902 | opp_overlap 852873 CAACCCCCCATATGA GCGAG CAA CTCGC TTTCAATGTGCAAAA HPAG1_0819 854036 - 853152 - | hypothetical protein TERM 779 855215 - 855200 - g 77 -6.2 -4.59117 | opp_overlap 855199 855200 AAATCAAGCATAAAA TCATAG AAGT CTATGA GTGTTTTTCCAAACG engA 854113 - 855498 + | GTP-binding protein EngA TERM 780 855587 - 855607 + F 85 -8.3 -4.5477 | opp_overlap 855590 GCTCAATCAGTCAAG CTAGGCGAT TAA ATCGCTTGG TTTTGTCATCTATTA HPAG1_0821 855640 - 855924 + | DNA-binding protein HU HPAG1_0822 856513 - 857124 + | hypothetical protein HPAG1_0823 857144 - 857761 + | hypothetical protein TERM 781 857750 - 857740 - f 79 -6.8 -4.57218 | AGAAGATAATGAAAA CGCT GAC AGCG AGCTCCAATGAAAAA HPAG1_0824 857758 - 859521 + | outer membrane protein P1 HPAG1_0825 859527 - 860510 + | UDP-GlcNAc C6 dehydratase TERM 782 861771 - 861753 - g 71 -6.8 -4.1196 | AAGCGAGTTTTAAAA TCCTTGAT TTT ATCAAAGA CAACGCCCTTTAATG HPAG1_0826 860507 - 861784 + | bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase TERM 783 862314 - 862291 - g 80 -4.6 -5.22039 | opp_overlap 862291 GTGAAAGCCAAAAAA CAAAGCGT TGATTTTT ACGCTCTG TATCCTAACTTGGGC HPAG1_0827 861784 - 862521 + | hypothetical protein HPAG1_0828 863235 - 862576 - | thiamine phosphate pyrophosphorylase TERM 784 862694 - 862713 + g 76 -2 -5.40474 | overlap 862708 TTATGCGTCGTGATG CCCCCAAT CGCT ATGAGGGG TTTTTTTACCCCGCT HPAG1_0829 864037 - 863228 - | thiamine biosynthesis protein TERM 785 863396 - 863408 + g 70 -3.3 -4.87626 | AGAAAGAGTGCAGCC CGTGC CAT GCGTG TTTTTCGTGTTAAAG HPAG1_0830 864816 - 864034 - | hydroxyethylthiazole kinase HPAG1_0831 867912 - 864901 - | type I restriction enzyme R protein TERM 786 865308 - 865328 + g 72 -4.7 -4.67038 | overlap 865300 865310 TCCTTAACTCTATGC TGGAGTTGA TGA TCGGCTCTA TTTTGGTTTTAACGC TERM 787 867600 - 867613 + g 87 -3.1 -5.79595 | TGAGATTAAAAATCG GATCT TCTT GGATC TTTTTTGTTTTAGCC TERM 788 867822 - 867835 + g 74 -3.8 -5.04222 | TTTCTAGCTCTGCTT CGCT CTCATA AGCG TTTTTCCTTTCGTTA TERM 789 867993 - 867952 - R 100 -15.3 -3.34236 | gap 1 AAATTCATTTTATAA GGGGAT-AGGGGGGTATTTT GCG ATAATACCCCCCTTAACCCC CTTAAGATCCCCCTA TERM 790 868043 - 868058 + r 81 -9 -3.89937 | TTTCAAGAGGCTATC GCTTGC TTAC GCAAGC TCTTTGTTATTTAGT HPAG1_0832 869287 - 868049 - | HP0790-like protein TERM 791 868109 - 868124 + g 70 -2.6 -5.08011 | CAGTAATTTTTCTCG GTAATA TTCG TATTGC TTTTTTCGGGCTTTT TERM 792 869262 - 869277 + g 73 -5.4 -4.54477 | overlap 869257 869264 TTAAGCGCTAGAGTT TGGAGC AAGC GCTCTA TTTTATGCATTTTGC HPAG1_0833 870821 - 869298 - | type I restriction enzyme M protein TERM 793 869327 - 869351 + g 82 -7.9 -4.60924 | opp_overlap 869326 869331, overlap 869331 CTTTGATAATACGAT CAAGGCGGTTT CGT AAAGCGCTTTG TTTTTCCACGATTTG TERM 794 869331 - 869347 + g 77 -5.1 -4.85782 | opp_overlap 869326 869331, overlap 869327 GATAATACGATCAAG GCGGTTT CGT AAAGCGC TTTGTTTTTCCACGA HPAG1_0834 871053 - 871739 + | hypothetical protein TERM 795 871733 - 871743 + T 85 -6.8 -5.07567 | opp_overlap 871732 ACGCCCTTATAAAGC CGCT TAA AGCG TTTTTTAAAATCTCA HPAG1_0835 872160 - 871762 - | hypothetical protein HPAG1_0836 872696 - 872157 - | hypothetical protein HPAG1_0837 874294 - 872693 - | ABC transporter, ATP-binding protein TERM 796 873225 - 873208 - G 83 -9.1 -3.97406 | opp_overlap 873207 CTAAAATTTTACAAA GCGTGGA TTTA CCCACGC CGTTTGGCCCTATGA HPAG1_0838 874492 - 875469 + | guanosine 5'-monophosphate oxidoreductase HPAG1_0839 875663 - 875466 - | hypothetical protein TERM 797 875608 - 875638 + gT 74 -4.8 -4.82901 | opp_overlap 875613 TGGATCATTTTCTTT TTAAATTCAAGCGC ATA GCCTTTGAATTCAA TTTTTATGAGCGAAA HPAG1_0840 876213 - 875635 - | phosphoheptose isomerase HPAG1_0841 877597 - 876206 - | ADP-heptose synthase TERM 798 877187 - 877219 + g 100 -6.5 -5.8187 | overlap 877188 877205 GATCACGCCATCTAT TTCTTGGATTTTTTC TGT GAAAAAATCTAAAAG TTTTTTTCTTAAATC TERM 799 877188 - 877218 + g 75 -7.8 -4.07495 | overlap 877187 877205 ATCACGCCATCTATT TCTTGGATTTTTTC TGT GAAAAAATCTAAAA GTTTTTTTCTTAAAT HPAG1_0842 878586 - 877594 - | ADP-L-glycero-D-mannoheptose-6-epimerase TERM 800 878131 - 878148 + g 73 -7.7 -3.93038 | gap 1 AGGGCTTTCGTTTTT GCCCACCA CAT TGG-GGGC TTTGGTGTTGCCATA HPAG1_0843 879116 - 878595 - | hypothetical protein HPAG1_0844 879846 - 879106 - | hypothetical protein TERM 801 879325 - 879313 - G 75 -5.5 -4.73388 | overlap 879316 879317 AATCCCCATTAAAAA CAACG GCA CGCTG GTGCCAAGCCCAAAA TERM 802 879331 - 879316 - G 76 -6.8 -4.47707 | overlap 879313 879317 CCCCATTAAAAACAA CGGCAC GCTG GTGCCA AGCCCAAAAGAAAGG HPAG1_0845 880508 - 879837 - | pantothenate kinase TERM 803 880085 - 880102 + g 85 -4.1 -5.61596 | AGGTCTTGAAAGGTT GCTCTAA GATT TTAGCGC TTTTTTTATACGCAT HPAG1_0846 882189 - 880513 - | hypothetical protein HPAG1_0847 882847 - 882191 - | hypothetical protein dut 883281 - 882844 - | deoxyuridine 5'-triphosphate nucleotidohydrolase greA 883765 - 883271 - | transcription elongation factor GreA TERM 804 883586 - 883600 + g 93 -10 -4.72696 | overlap 883591 TAAATCCACGATTCT CGCTTC AAT GAAGCG TTGTTTTTCTTTAGC TERM 805 883591 - 883603 + g 78 -4.1 -5.27335 | overlap 883586 CCACGATTCTCGCTT CAATG AAG CGTTG TTTTTCTTTAGCGGC lpxB 884888 - 883806 - | lipid-A-disaccharide synthase HPAG1_0851 885349 - 884888 - | hypothetical protein hypA 885706 - 885353 - | hydrogenase nickel incorporation protein flgE 887921 - 885765 - | flagellar hook protein FlgE TERM 806 888092 - 888066 - R 100 -8 -5.68039 | opp_overlap 888069 AAATTTATAAAAAAA TAAGGGGTTTTG TAA CACCACCCCTTA ATTACGCTTTTTAAA HPAG1_0854 888874 - 888140 - | CDP-diacylglycerol pyrophosphatase TERM 807 888297 - 888324 + g 81 -5.6 -5.01732 | overlap 888286 TTATGTGCATTAGGC GCTTCTTTAGCA AGCA TGATAAAGGGGC TTTTTTGCGCCAGTT HPAG1_0855 889234 - 889563 + | alkylphosphonate uptake protein HPAG1_0856 889830 - 889615 - | hypothetical protein HPAG1_0857 890787 - 889912 - | hypothetical protein TERM 808 890918 - 890896 - R 95 -10.7 -4.33258 | ATTTTGAAAGACAAA GCGTTCTTA AAAAA TAAGAACGC TCAAAGAAAAGAGTT HPAG1_0858 892449 - 890932 - | catalase TERM 809 894779 - 894789 + G 72 -4.6 -4.6635 | GGGATCAATCTTGCA TGGC TTA GCCG TTTTGTTACCGGTTT HPAG1_0859 892772 - 895147 + | iron-regulated outer membrane protein ruvC 895621 - 895148 - | Holliday junction resolvase TERM 810 895990 - 895979 - g 84 -2.2 -5.79588 | CCAAAATGAAAAAAA TCCG GGAA CAGA AATGAAAATCTTCAC HPAG1_0861 895752 - 896483 + | hypothetical protein TERM 811 896962 - 896976 + T 83 -4.3 -5.56263 | CATCTTTCTTTACTC CTTGA CTTAT TCAAG TTTTTGTTTTATAGT TERM 812 897219 - 897229 + T 71 -6.8 -3.97959 | overlap 897218 TCAACCTATGGTTGC CCCT TAG AGGG TTTGGTGTCTTGTTT TERM 813 897360 - 897329 - T 83 -9.6 -3.78775 | TGTGTGATTATTAAA GTATAGGTTAGAGA ATAT TTTCTAACCCATAC TAAAAACACTTTAAG TERM 814 897377 - 897367 - T 74 -5.4 -4.82154 | AACCCATACTAAAAA CACT TTA AGTG TGCCAAGAGACCCTG HPAG1_0862 898460 - 897594 - | hypothetical protein ruvA 899064 - 898513 - | Holliday junction DNA helicase motor protein TERM 815 898707 - 898678 - G 70 -3.6 -4.86621 | opp_overlap 898686 ATCTTGAATGAAAAA GCCAATGAGATC CACCAT GATCTTATCAGC GAGCTTTTTGCCAAT TERM 816 898845 - 898859 + g 70 -2.8 -5.15381 | opp_overlap 898845 898846, overlap 898846 CATTGATTTTTAAAA GCCTTT CAA AAAGGA TTTTTTCGCTCTCTT HPAG1_0864 900934 - 899090 - | hypothetical protein TERM 817 899623 - 899603 - G 72 -3.1 -5.05153 | overlap 899599 AGCGTAAAAAATAAA GCGGTTGCC ATT GCCATCCAC CTCATCAATCCAACA TERM 818 899664 - 899688 + g 80 -7.9 -4.44046 | opp_overlap 899685 AAATACAGCTTGTTA TCGCTTTTGAG CTT TTCTAAAGCGA TTTCTTTCGCATAGA TERM 819 900110 - 900140 + g 82 -6.2 -4.96657 | overlap 900114 CATTTTAACCCCTTG TAAGGCTTTGGAGT AAT ACACTAAAGCGTTA TTTTCTTCTCTTTCT TERM 820 901557 - 901544 - g 80 -2.3 -5.63517 | opp_overlap 901544 TTTCTAAAGAAAAAA CGCAT TTAG AAGCG TTGTATTATTTGAGT TERM 821 901966 - 901986 + G 87 -3.2 -5.86061 | opp_overlap 901961, overlap 901969 CAGGATTTAATCTTA CAACGCTT GCAAA AGGCGTGG TTTTTTTTGGTGGGG HPAG1_0865 901105 - 902487 + | virulence factor mviN protein cysS 902488 - 903885 + | cysteinyl-tRNA synthetase TERM 822 905588 - 905578 - g 72 -4.6 -4.81551 | opp_overlap 905578 CACTGATACCAAAAA CGGC ACA GCCA CTTTTAATAACGATA HPAG1_0867 904115 - 908005 + | vacuolating cytotoxin TERM 823 908037 - 908020 - T 100 -11.3 -4.20932 | opp_overlap 908019 908009 AATACCGATCTAAAA CCCATGC TTTG GCATGGG GTGTGATGGGTTTAA TERM 824 908105 - 908084 - T 75 -8 -3.72893 | opp_overlap 908083 GAGCGTGTTAGCAAA CCAACCCC AAATAA GGGGTTAG CCTTTAAAATAAATT HPAG1_0868 909150 - 908125 - | lipopolysaccharide 1,2-glycosyltransferase TERM 825 908394 - 908384 - G 79 -5.4 -4.93296 | TCATCAGCATAAAAA TGCA ACA TGCA AGCATCAGATTTTTT TERM 826 908920 - 908909 - G 79 -5.8 -4.86001 | overlap 908896 ATCATTTTAGAAAAA CGCT TTTT AGCG AAAGGATTGAGTCTT TERM 827 909148 - 909094 - G 85 -8.4 -4.40358 | gap 3, overlap 909147 ATGGATTTGATAAAA GAGTTT-TACCCCAT-CTCT-TTCTTG TGTG CAAGAAGAAAGCATGGAGTATAAACTC ACACCCGCAGGGATG HPAG1_0869 910076 - 909309 - | iron(III) dicitrate ABC transporter, ATP-binding protein HPAG1_0870 911056 - 910076 - | iron(III) dicitrate ABC transporter, permease protein HPAG1_0871 911903 - 911049 - | hypothetical protein TERM 828 911477 - 911460 - G 73 -5.5 -4.59853 | GTAATGGCCTAAAAA GAGCATG CTCA CACGCCC CGCTATGGAAGAAAG TERM 829 911866 - 911878 + g 74 -4.8 -4.76087 | GCCCCAGTGATAACC GCCA CCTTT TGGC TTTCTTTCTTCTCTC HPAG1_0872 912043 - 912567 + | hypothetical protein HPAG1_0873 912939 - 912673 - | hypothetical protein TERM 830 912902 - 912915 + g 74 -3.9 -5.09426 | opp_overlap 912896 912892 912893 912902, overlap 912893 912905 AGTAATTTATCAAAA TCTTT TTGA AAAGA TTTTTTAAGATTGAG HPAG1_0874 913297 - 912920 - | hypothetical protein HPAG1_0875 913376 - 913582 + | hypothetical protein HPAG1_0876 915861 - 913627 - | outer membrane protein BabA TERM 831 915259 - 915271 + g 70 -3.3 -4.86731 | GCTGTAGGTTACATT CACCG TGC CGTTG TTTTCTTTGAGCGCG TERM 832 915326 - 915337 + g 72 -4.4 -4.7416 | TGGAGGATCTGGTAG GCTT CGTT AAGC TTTTTGAAATTTTCA HPAG1_0877 916338 - 917003 + | hypothetical protein HPAG1_0878 918066 - 916954 - | hydrogenase expression/formation protein HypD HPAG1_0879 918320 - 918084 - | hydrogenase expression/formation protein HypC TERM 833 918331 - 918353 + r 75 -2.7 -5.60993 | CACATTAAAACGAAT GCGTGGA TTGGTAATT TTCACGC TTTTTTTCTAAAAGG HPAG1_0880 919048 - 918320 - | hydrogenase expression/formation protein HypB HPAG1_0881 919128 - 919316 + | hypothetical protein HPAG1_0882 919590 - 919291 - | hypothetical protein HPAG1_0883 920053 - 919787 - | acetate kinase TERM 834 920114 - 920128 + r 81 -10 -3.06696 | CTTCTAAGCTCTTAT TTGCGC ATT GCGCAA TGTATTCCACCACAG HPAG1_0884 920670 - 920149 - | acetate kinase HPAG1_0885 921224 - 920685 - | phosphotransacetylase HPAG1_0886 922122 - 921268 - | phosphotransacetylase HPAG1_0887 922234 - 922109 - | phosphotransacetylase TERM 835 923321 - 923304 - g 70 -5.5 -4.31485 | TAACGAAAAAAAAAC GCCCCCT TTAA AGGAAGC TTTACAAATGAACGC HPAG1_0888 922483 - 924057 + | hypothetical protein TERM 836 924869 - 924851 - g 70 -8.8 -3.32997 | overlap 924865 TTTTGATAAAGGCAA GCCCATGC TGA GAATGGGC GAAATGATTTTACCC flgD 924108 - 925091 + | flagellar basal body rod modification protein TERM 837 925602 - 925592 - g 75 -5.4 -4.74453 | GAAGACATTGAAAAA TTGC ATG GCAA CACCCTTTCGCCCTT flgE 925088 - 926905 + | flagellar hook protein FlgE HPAG1_0891 926957 - 927544 + | hypothetical protein TERM 838 928485 - 928460 - g 72 -3.3 -5.02476 | gap 1 ATATCCCCTAAAAAA CGCATTTATGTC AAC GCCA-AAACGCG CCAAAAAAACCCCTT HPAG1_0892 927554 - 928705 + | adenine specific DNA methyltransferase TERM 839 929081 - 929068 - g 72 -4.5 -4.8048 | TGTGGACACTAAAAA CGCCA TAGA TGACG ATAAAAAGCCCTACA TERM 840 930167 - 930177 + G 73 -2.4 -5.35354 | CTCAATGGGGCTAAA ACGC TGA GCGA TTTTTTCATTCTCTA HPAG1_0893 928709 - 930736 + | rep helicase, single-stranded DNA-dependent ATPase TERM 841 930822 - 930794 - T 84 -11.1 -3.14026 | opp_overlap 930791 TATAGCGATAGTTAA GCCCCTAAGAGCT AGG AACTCTTAAGAGC TTGTTTTAATAAAGT HPAG1_0894 931470 - 931282 - | hypothetical protein HPAG1_0895 931575 - 933128 + | outer membrane protein HopC TERM 842 933562 - 933580 + G 80 -10.4 -3.65135 | GTGCGACCGCAGCTG CTACTAGT TCT ACTAGTAG TTCTCCTTGTTTCCA HPAG1_0896 933150 - 934739 + | outer membrane protein HopB TERM 843 934770 - 934744 - T 88 -7.3 -5.00884 | opp_overlap 934751 ACGCCTTCTAAAAAA GCTCAAGGCCT TTTAT AGGCTTTGAAC GAATCCCTTTAAACC HPAG1_0897 936991 - 935447 - | outer membrane protein HopG TERM 844 936299 - 936311 + g 79 -4.8 -5.08824 | ATCGTTGCTGTTACT GGGA TTGCC TCCC TTTTTTAAATAAGGC TERM 845 936547 - 936537 - G 76 -4.6 -5.0538 | overlap 936538 TCGTATCGTAAAAAA GCGG TAT CCAC CACATAAGGCCTTGC HPAG1_0898 939679 - 937238 - | iron-regulated outer membrane protein TERM 846 937392 - 937405 + g 83 -5.3 -5.28176 | AACACCGCGTTCAGA CTCAA CCCT TTGAG TTTTTTGTAAGTGGG TERM 847 939129 - 939117 - G 79 -4.8 -5.01732 | opp_overlap 939117 939124 AAGTTGGTTAAAAAA GTGG CAGCC CCAC TTATGGCGTAGTCTT TERM 848 939903 - 939920 + r 100 -8.5 -5.7827 | TTTCAAGAGGTTATC GCTTGAT TAAA ATCAAGC TTTTTTATTTATATT HPAG1_0899 940369 - 939938 - | hypothetical protein carB 943631 - 940374 - | carbamoyl phosphate synthase large subunit TERM 849 940963 - 940974 + g 88 -3 -5.9873 | opp_overlap 940963 TAAACGCCTTTAGAA TATC CCAC GATA TTTTTTTTATCATAG HPAG1_0901 944421 - 943729 - | hypothetical protein HPAG1_0902 944565 - 945560 + | glyceraldehyde-3-phosphate dehydrogenase TERM 850 947236 - 947222 - g 70 -3.6 -4.8543 | CAAGCCTTAGAAAAA GATTTA GCC CAAATC AAACAATTAGCCAAC TERM 851 948172 - 948182 + G 73 -6.8 -4.21812 | GGTTTATAATTTGTG GGCT AAT AGCC TTATTTTCAATAACA TERM 852 949016 - 949003 - g 76 -6.7 -4.44277 | CATGAAAATCCAAAA CGCTA CCTA TAGCG GCAATAATAACATTC TERM 853 949446 - 949431 - g 80 -6.2 -4.67048 | CTACCTTAAAAGAAA TGATTG AATC CAATCA ATTAGACAATATCAC TERM 854 952479 - 952491 + G 70 -7.7 -3.762 | TTTTTAAACCCCAAG TAGGC TTA GCCTA TTATTACATTGGTTT HPAG1_0903 945641 - 952894 + | vacuolating cytotoxin (VacA)-like protein TERM 855 952922 - 952908 - f 72 -7.2 -3.79519 | AATGGTATCATTAAA CTTGTT TTT AACAAG CCTAACATAGCAGGA TERM 856 954010 - 954021 + G 71 -7.2 -3.86684 | opp_overlap 954010, overlap 953998 TCCCTCTTTTTCAAA CGCC TTGT GGCG TTTAATGTGAGTTAT HPAG1_0904 952945 - 954051 + | outer membrane protein HopK HPAG1_0905 954325 - 954119 - | 4-oxalocrotonate tautomerase TERM 857 954579 - 954593 + G 72 -8.6 -3.49475 | AATAGCGTATCATTT GGGTTT AGA AAACCC TTATCTGGCGCTCAA recR 954472 - 955053 + | recombination protein RecR truD 955050 - 956195 + | tRNA pseudouridine synthase D HPAG1_0908 956134 - 957114 + | heat shock protein HtpX folE 957115 - 957657 + | GTP cyclohydrolase I TERM 858 958403 - 958391 - g 73 -5.5 -4.51224 | opp_overlap 958391 AAGATGAAGAAGAAA GCGGT AAA ACCAC TCATTTAGACAGCGC HPAG1_0910 957673 - 958584 + | geranyltranstransferase TERM 859 959188 - 959175 - g 72 -4.5 -4.72201 | CTGTATAAAAAAGAA GTGCA TAAA CGCAC AGACCCCAAAAACGA surE 958581 - 959384 + | stationary phase survival protein SurE HPAG1_0912 959381 - 960040 + | hypothetical protein TERM 860 960342 - 960361 + G 77 -5 -4.9218 | gap 1, overlap 960344 CGTTTAATTTGAGCG CA-GAGGGT TAC GCCCTCATG TTTTTATACTACCTG TERM 861 960600 - 960588 - g 77 -6.3 -4.63486 | overlap 960572 960591 ATTTTTTCAATAAAA TCATC AGC GATGA AAAACAATGCTTTTT HPAG1_0913 960041 - 960646 + | hypothetical protein TERM 862 961162 - 961152 - g 71 -6.8 -3.97051 | AAATATCTTAAATAA CGCT AAA AGCG CGCATTTTAAATTTG HPAG1_0914 960643 - 961398 + | hypothetical protein TERM 863 961704 - 961694 - g 73 -5.4 -4.56597 | GGGTTGGGTCAAAAA CTCT ATG AGAG CGTGGAACGATACGC HPAG1_0915 961409 - 961894 + | hypothetical protein TERM 864 961916 - 961898 - g 70 -9.6 -2.71011 | ACTCTGTCTTAATTA GTGCGTCA ATT TGACACAC GCCCAAGCGATAATT HPAG1_0916 961898 - 962230 + | putative outer membrane protein HPAG1_0917 963586 - 962417 - | proline and betaine transporter HPAG1_0918 964860 - 964057 - | hypothetical protein TERM 865 964763 - 964775 + g 71 -6.3 -4.24562 | TCTAATAGTTTTGCA GCATT ATA AATGC TTTCTGTGATTTTTT TERM 866 964821 - 964831 + g 75 -2.6 -5.26875 | TCTCTTTGATATTCT TTTT ATT AAAA TTTTTTAATTCAAAA HPAG1_0919 964979 - 964836 - | hypothetical protein HPAG1_0920 965377 - 965033 - | hypothetical protein HPAG1_0921 965744 - 965355 - | hypothetical protein HPAG1_0922 966526 - 965813 - | amino acid ABC transporter, permease protein TERM 867 966435 - 966415 - G 79 -6.9 -4.53439 | opp_overlap 966425, overlap 966425 CTAAAGGCAAAGAAA TGCAAAAAG CGG CTTTTAGCA TGGGGTAGAAAGCCT HPAG1_0923 967280 - 966510 - | amino acid ABC transporter, periplasmic binding protein HPAG1_0924 968484 - 967351 - | alanine racemase, biosynthetic HPAG1_0925 969843 - 968491 - | D-alanine glycine permease HPAG1_0926 971116 - 969884 - | D-amino acid dehydrogenase HPAG1_0927 971515 - 971138 - | hypothetical protein HPAG1_0928 971905 - 971693 - | hypothetical protein TERM 868 971871 - 971855 - G 76 -10.9 -2.62983 | CTCAGTGGTAGAGCA CGACCTT GCC AAGGTCG GGGCCGCGGGTTCGA TERM 869 972145 - 972131 - g 75 -5.6 -4.82901 | TGTTCGGTAGAAAAA GCGGCT AAA AGCGGC GGTGTTACCAAGATT HPAG1_0929 971936 - 972235 + | protein tRNA-associated locus protein HPAG1_0930 972795 - 974285 + | hypothetical protein TERM 870 974415 - 974402 - f 75 -2.5 -5.54192 | ATCAATTTAAAAAAA TTATT CAAA AATAA CCATCAATTATAAAA TERM 871 974463 - 974484 + F 71 -3.2 -5.14563 | overlap 974460 AAGAGTAACGCTTTT TTAAAAAA TACATT TTTTTTAA TTTTTTAATCAACCA HPAG1_0931 974602 - 974964 + | hypothetical protein TERM 872 975387 - 975403 + T 76 -3.7 -5.36965 | opp_overlap 975387 ACCCCCTACAAAAAC GCTTCTA ATT TATAAGC TTTTTTATGCTCTTG HPAG1_0932 976390 - 975377 - | hypothetical protein HPAG1_0933 976852 - 976400 - | SPOUT methyltransferase superfamily protein TERM 873 976487 - 976465 - G 80 -10 -3.7511 | opp_overlap 976464 GCTCGCATAAGACAA TTTTAGCCAC TTC ATGGCTAAAA GTCATCTCGCTCAAA TERM 874 976677 - 976689 + g 72 -3.4 -5.01732 | opp_overlap 976677 AAATACGGCTCAAAG GCTA GAGAG TAGC TTTTTTGAGCGAATT HPAG1_0934 977735 - 976866 - | acetyl-CoA carboxylase subunit beta TERM 875 977410 - 977422 + g 78 -2.6 -5.38348 | CTGATCACTGAGCTT GGGC GGTTA GTCC TTTTTTCGTATTTTT TERM 876 978324 - 978348 + G 87 -5 -5.42259 | opp_overlap 978324 GTTTGAAAGCTAAAA GCCTGGATTT AGAAA AGATCCAAGC TTTTTTTCGCACTCA HPAG1_0935 977816 - 978430 + | hypothetical protein HPAG1_0936 978441 - 979097 + | hypothetical protein HPAG1_0937 979666 - 979100 - | hypothetical protein HPAG1_0938 980363 - 979731 - | oxygen-insensitive NADPH nitroreductase HPAG1_0939 981213 - 980374 - | prolipoprotein diacylglyceryl transferase TERM 877 980562 - 980577 + g 70 -2.5 -5.00884 | CCACAATCAGCAACC CACGC GTTTTG GTGTG TTTTTTAGCCCACAT HPAG1_0940 981951 - 981223 - | hypothetical protein HPAG1_0941 983151 - 981970 - | 3-deoxy-D-manno-octulosonic-acid transferase HPAG1_0942 983916 - 983152 - | hypothetical protein TERM 878 983250 - 983234 - G 73 -7.9 -3.80877 | overlap 983232 983235 TCAGCGTATAAAATA CGCCCGC AAT ACGGGCA AGTGATCATATCCCC HPAG1_0943 984657 - 983926 - | hypothetical protein TERM 879 984673 - 984691 + r 100 -11.8 -4.11447 | overlap 984670 984669 TTTAAGCCTTTGTTA GAGCGTTT TTT AAACGCTC TTCTCTTTCTTTTTC glyQ 985555 - 984659 - | glycyl-tRNA synthetase subunit alpha gpsA 986507 - 985569 - | NAD(P)H-dependent glycerol-3-phosphate dehydrogenase HPAG1_0946 988231 - 986648 - | hypothetical protein TERM 880 987952 - 987966 + g 79 -5.6 -5.00616 | CGCTAAACCCTCCCC CCACCG CAA CGATGG TTTTTTGGAACAAAC HPAG1_0947 990564 - 988228 - | hypothetical protein TERM 881 988290 - 988309 + g 74 -6.5 -4.36485 | overlap 988302 988304 TGGATTGCACTTTAT TTTGCAC TTGATT GTGCAAA TTTTGCATGTTTTCT TERM 882 989341 - 989353 + g 70 -7.7 -3.66732 | overlap 989332 TTTTTGGTTTCTTTC CCAAG AAG CTTGG TTGTTGAAATCCTTA TERM 883 990058 - 990070 + g 79 -3.3 -5.40464 | AATATTCTCTTTGGG CGCTG CTT CAGGG TTTTTGTTTCTGCTA TERM 884 990128 - 990144 + g 78 -3.7 -5.18355 | TCTTTAGTCCTATTT GACAAAC TCT GTTTTTC TTTTTGCTTTTTGAC TERM 885 990516 - 990536 + g 83 -3.3 -5.54894 | AGCCTTGTTCTTGTA GCGTTTT TTCAATT AAAGCGC TTTTTTTAATGAGTT HPAG1_0948 992087 - 990561 - | hypothetical protein TERM 886 992036 - 992018 - G 77 -8.2 -4.18494 | opp_overlap 992018 992017 TAGCGGTAGGCAAAA CGCTCTTT CCT AAAAAGCG GTTTAATAGCGTGCT TERM 887 992466 - 992449 - R 77 -8.5 -3.64821 | CAAAAATATTAAAGA GCTTGAT TTTA ATCAAGC GATAGCTTATAAAAA TERM 888 992657 - 992635 - R 74 -9.2 -3.06183 | opp_overlap 992625 992642, overlap 992642 GTTATTGGCATTTAA TGAAAAACGC CAT GCGTTTTACA ACCCATGCGTTTGAG HPAG1_0949 992934 - 992653 - | hypothetical protein TERM 889 992747 - 992735 - G 75 -7.7 -4.12532 | opp_overlap 992746 TTTGCTAGAGATAAA GCGAT CTC ATCGC TTAAAAAAAGCTTGA HPAG1_0950 996009 - 992950 - | cobalt-zinc-cadmium resistance protein HPAG1_0951 997088 - 996009 - | cobalt-zinc-cadmium resistance protein TERM 890 996892 - 996876 - G 70 -8.7 -3.39521 | opp_overlap 996876, overlap 996871 CGCATCAAAACTCAA GCTCTGC ACC ACAGAGC TTTTACTATCAAAAT TERM 891 996876 - 996892 + g 80 -8 -4.3467 | opp_overlap 996876 996871 CGCATCAAAACTCAA GCTCTG CACCA CAGAGC TTTTACTATCAAAAT TERM 892 996966 - 996987 + g 100 -4.5 -5.88565 | gap 1, opp_overlap 996965 ATCTAATTTAACCAC CTT-TAACCC CAT GGGTTGCAAG TTTTTTTCTTCTAAA HPAG1_0952 998380 - 997085 - | hypothetical protein TERM 893 997243 - 997228 - G 72 -4.6 -4.7078 | opp_overlap 997228 TCAAGTATTCAAAAA GCCCGA TTTT TTGGGC TTCATAAGCGATGCG TERM 894 997984 - 997972 - G 77 -6.2 -4.51765 | CATAAGTCAAATAAA GGCG TTTAG CGCC AATAAAAGCGAGATT glyS 1000475 - 998370 - | glycyl-tRNA synthetase subunit beta TERM 895 998891 - 998907 + g 79 -5.1 -5.09225 | opp_overlap 998878 AGCTTTGATAAACGC CCACTTT TTC AAAGAGG TTTTTTAAATCCGCT TERM 896 999008 - 998995 - G 79 -6.7 -4.54727 | overlap 998990 CGCCTTAAAGCAAAA GGATC TTTA GATCC GCTAGGGATTTTACC HPAG1_0954 1000587 - 1001672 + | hypothetical protein TERM 897 1002180 - 1002166 - g 74 -5 -4.68908 | CTTATTTAAAACAAA TGCAAA ATA TCTGCA ATGAAAACATTCAAA TERM 898 1002398 - 1002408 + G 71 -4 -4.94992 | opp_overlap 1002398 CGGCATGCAAGATGA TGAA AGC TTCA TTTTTATCAATTTCA HPAG1_0955 1001685 - 1003160 + | phosphoglyceromutase gatC 1003175 - 1003456 + | aspartyl/glutamyl-tRNA amidotransferase subunit C TERM 899 1003479 - 1003495 + T 85 -8.1 -4.62336 | opp_overlap 1003491 1003492 TGAATAGGTTTCATA TCAAGTT AAA AACTTGA TTTTTGAAATCAAAT TERM 900 1003509 - 1003491 - T 74 -5.4 -4.76892 | opp_overlap 1003479, overlap 1003492 ATATCAAGTTAAAAA CTTGATTT TTG AAATCAAA TAGACAGAAAAAAGC TERM 901 1003529 - 1003546 + T 76 -5.6 -4.99972 | CAGAAAAAAGCTATC GCTTGA TCCAAT TCAAGC TTTTTACTATTTTAT HPAG1_0957 1004886 - 1003576 - | adenosylmethionine--8-amino-7-oxononanoate transaminase TERM 902 1003872 - 1003888 + g 73 -2.3 -5.26119 | ATTCGCTTAAAGCCT TGTTCTT TTC AATAACA TTTTCTTTTTCAAAA HPAG1_0958 1005016 - 1006479 + | peptidyl-prolyl cis-trans isomerase D HPAG1_0959 1006495 - 1007973 + | cell division protein TERM 903 1008875 - 1008861 - g 73 -10 -2.77344 | opp_overlap 1008852, overlap 1008860 CGACTGGCGAAGAAT CCGCTA AAT TAGCGG TGCAAAATGCGATCC HPAG1_0960 1008104 - 1009261 + | cell division protein FtsZ HPAG1_0961 1009818 - 1009714 - | hypothetical protein TERM 904 1009898 - 1009917 + r 74 -8.6 -3.35696 | opp_overlap 1009897 ACTCATCTCATCAAT GGCTCTGA CTTT TTAGAGCC TTCAATTCTTTCTAA HPAG1_0962 1010117 - 1009929 - | hypothetical protein HPAG1_0963 1011104 - 1010280 - | hypothetical protein TERM 905 1010348 - 1010358 + g 72 -4.6 -4.77157 | TTTCAATGTGGTTAG CGTC TAG GGCG TTTTTGATGCGTTCA HPAG1_0964 1011430 - 1011239 - | hypothetical protein HPAG1_0965 1012578 - 1012207 - | hypothetical protein HPAG1_0966 1012961 - 1012641 - | hypothetical protein TERM 906 1013166 - 1013156 - H 70 -4 -5.02502 | GATACTATACAAAAA TAAG CTT CTTA AACAAAGTAAAACAT TERM 907 1013512 - 1013463 - H 87 -11 -3.47349 | opp_overlap 1013463 1013464, overlap 1013464 1013469 TCTCTAAAGGCACAA GGAAAAGGGAGCTAAAGATAAA AACATA TTTACCCTTAACTCCCCTTTCT CTTTATAGGGAGCTG TERM 908 1013511 - 1013464 - H 100 -14.5 -2.68088 | opp_overlap 1013464 1013463, overlap 1013463 1013469 CTCTAAAGGCACAAG GAAAAGGGAGCTAAAGATAAA AACATA TTTACCCTTAACTCCCCTTTC TCTTTATAGGGAGCT TERM 909 1013506 - 1013469 - H 100 -10.8 -4.50661 | opp_overlap 1013464 1013463, overlap 1013464 1013463 AAGGCACAAGGAAAA GGGAGCTAAAGATAAA AACATA TTTACCCTTAACTCCC CTTTCTCTTTATAGG TERM 910 1016069 - 1016081 + H 70 -6.2 -4.2354 | AGGTTCTATTTCACT CCGC TCACT GCGG TTCTTTTCACCTTTC TERM 911 1016235 - 1016217 - H 73 -8.9 -2.80344 | overlap 1016216 CTGCTACCTAAGAAC GCCTTGT CGCAT ACAAGGC TATCACTTTCTATGG TERM 912 1016852 - 1016884 + H 72 -5.7 -4.51847 | opp_overlap 1016852 1016860, overlap 1016860 1016870 TGCCAAGTTTAATCA GCTAATGAGCTTT TTATTTT AAAGCTTTTTAGC TTTTATAACTTGTTT TERM 913 1017168 - 1017143 - H 89 -7.8 -5.00616 | opp_overlap 1017147, overlap 1017147 1017165 TGGGGGGCTAAAAAA TAAAGCTTTA AATAAA TAAAGCTTTA AGATAAATTAAGATA TERM 914 1017164 - 1017147 - H 70 -4.2 -5.04249 | opp_overlap 1017147, overlap 1017143 GGGCTAAAAAATAAA GCTTTA AATAAA TAAAGC TTTAAGATAAATTAA HPAG1_0967 1017340 - 1017606 + | hypothetical protein HPAG1_0968 1017993 - 1018433 + | hypothetical protein TERM 915 1018463 - 1018430 - f 75 -4.7 -5.09895 | gap 1, overlap 1018434 GATTGAGCGAAAAAA TTA-AGGGTTATGGGT TTT ACCCATAAACCTATGA AAGGATTTTAATGGA TERM 916 1018458 - 1018434 - f 95 -11.5 -3.94773 | overlap 1018430 GAGCGAAAAAATTAA GGGTTATGGGT TTT ACCCATAAACC TATGAAAGGATTTTA TERM 917 1020030 - 1020011 - g 83 -3.6 -5.63517 | gap 1 GCGCTAAAGAAAAAA GTT-GGGCT AAA AACCCTAAC ATCGTGCATGCTTTA HPAG1_0969 1018474 - 1020303 + | hypothetical protein TERM 918 1020349 - 1020320 - f 76 -6.5 -4.68593 | gap 1, overlap 1020323 1020325 GCGATCACTTAAAAA TAAGG-GGGCGTTT AAA AAACACCCACCCCA CAACAAGGAGGAACA TERM 919 1020345 - 1020323 - f 85 -8.4 -4.4521 | overlap 1020320 1020325 ATCACTTAAAAATAA GGGGGCGTTT AAA AAACACCCAC CCCACAACAAGGAGG TERM 920 1020343 - 1020325 - f 74 -9.6 -2.54902 | overlap 1020323 1020320 CACTTAAAAATAAGG GGGCGTTT AAA AAACACCC ACCCCACAACAAGGA HPAG1_0970 1020454 - 1020699 + | hypothetical protein HPAG1_0971 1020701 - 1021363 + | hypothetical protein HPAG1_0972 1023316 - 1021469 - | arginine decarboxylase TERM 921 1022579 - 1022565 - G 72 -8.6 -3.53012 | opp_overlap 1022553 1022578, overlap 1022577 1022578 CCCGCTTCTCTTAAA GCCTTT TTT AAAGGC GAAATATCGCTGATT HPAG1_0973 1024500 - 1023331 - | type 1 capsular polysaccharide biosynthesis protein J HPAG1_0974 1024933 - 1024505 - | hypothetical protein HPAG1_0975 1025735 - 1024950 - | hypothetical protein TERM 922 1025308 - 1025320 + g 70 -2.6 -5.02502 | opp_overlap 1025298 TACAAGGCTTTTAAA GCCT CTAGC GGGC TTTTTCTGTGGTATA HPAG1_0976 1026758 - 1025739 - | hypothetical protein HPAG1_0977 1028690 - 1026759 - | methionyl-tRNA synthetase TERM 923 1027639 - 1027661 + g 74 -4.2 -5.0133 | TCGTTATTCAAATTC GCGTTGAT CCTTTCT ATTAACGC TTTTTTAGAAAAATC TERM 924 1027916 - 1027936 + g 90 -8.3 -4.84311 | overlap 1027918 1027925 TACCCACAATATGCC TAGCGCATT CAA AATGCGCCA TTTTATTGTCTAAAC TERM 925 1027918 - 1027934 + g 76 -10.9 -2.69195 | overlap 1027916 1027925 CCCACAATATGCCTA GCGCATT CAA AATGCGC CATTTTATTGTCTAA TERM 926 1029585 - 1029603 + G 70 -3.1 -4.86731 | CATGTTTGAGCACGT GGGTAAG GATAA TTTGCCC TTTTATTTCAAAAAA HPAG1_0978 1028860 - 1030029 + | cyclopropane fatty acid synthase HPAG1_0979 1031903 - 1030032 - | hypothetical protein TERM 927 1031457 - 1031435 - G 93 -11.4 -4.35524 | opp_overlap 1031433 GCCCTAAACGCAAAA GGAAAGCATC GCT GATACTTTCC ACATCTTTTTGTTCG HPAG1_0980 1032476 - 1032378 - | hypothetical protein HPAG1_0981 1032502 - 1032705 + | hypothetical protein HPAG1_0982 1033885 - 1033136 - | putative neuraminyllactose-binding hemagglutinin-like protein TERM 928 1033311 - 1033296 - G 74 -6.2 -4.42653 | ATCTTATGCACAAAA GTTTTG GGGA CAAAAC CTCCAGAATTCATGC guaA 1035496 - 1033970 - | bifunctional GMP synthase/glutamine amidotransferase protein TERM 929 1034463 - 1034478 + g 74 -6.1 -4.34771 | CATTCAGGCAGTCCG CCCAC ATTATG GTGGG TTTTGATCACTTTTG TERM 930 1034981 - 1034956 - G 82 -7.7 -4.55128 | AGTCGCAAACTAAAA GGGCAAAATTT TCTA AAATCTTACCC CCCTCTTCGCTTTGA HPAG1_0984 1035995 - 1035507 - | hypothetical protein TERM 931 1035722 - 1035708 - G 72 -3.6 -5.09204 | AGACTGGAATAAAAA CTCTTT ATG AAAAAG CGCTTTTTTAGGCAT HPAG1_0985 1038546 - 1036156 - | biotin sulfoxide reductase TERM 932 1038150 - 1038160 + g 71 -4 -4.88405 | AACCACCATAACTGG CATT ATA AATG TTTTCTTTAGGGATT HPAG1_0986 1039240 - 1038650 - | hypothetical protein HPAG1_0987 1040588 - 1039266 - | nifS-like protein TERM 933 1040182 - 1040214 + g 76 -3.5 -5.30199 | opp_overlap 1040188 CCTACAATCACACGC TTTAAAGCCATATCT TTC AAATACGGCTCTAAA TTTTTCTTCGTTTTT HPAG1_0988 1040921 - 1040607 - | ADP hydrolase TERM 934 1041926 - 1041949 + G 70 -5.4 -4.42806 | gap 1, overlap 1041927 1041946 1041947 ATTAGCCATGCTGAC TTGC-CAAATC AAT GATTTGCGCAG TTTCTTTGAAACTGA TERM 935 1041947 - 1041963 + G 71 -9.5 -2.76315 | overlap 1041927 1041926 1041946 1041949 AATCAATGATTTGCG CAGTTTC TTT GAAACTG ATTTGAGGGTGTTGG pheS 1041003 - 1041989 + | phenylalanyl-tRNA synthetase subunit alpha TERM 936 1042175 - 1042159 - g 88 -8.7 -4.83169 | opp_overlap 1042159 AGCCCCCCATAAAAA CGCTGAA AAA CTCAGCG TGTGTCAAGTGGATG TERM 937 1043503 - 1043492 - g 73 -2.2 -5.28942 | TATTCTAAAGAAAAA CAGC AAAA ACTG GGCTTTGAAGTTTTA TERM 938 1044113 - 1044091 - g 70 -7.8 -3.68674 | AAAAGCTCTAAAAGA CGCTCAAATC CCT AATTTAAGCG AGATTCTACCCCTTG pheT 1041989 - 1044283 + | phenylalanyl-tRNA synthetase subunit beta TERM 939 1044783 - 1044765 - g 71 -6 -4.2803 | opp_overlap 1044760 CAGCTCAAGTCAAAA GCGCTT TTGTTTT AAGCGC CTTACAAGCTCAAGG HPAG1_0991 1044287 - 1045576 + | 3-phosphoshikimate 1-carboxyvinyltransferase TERM 940 1045725 - 1045706 - g 87 -5.1 -5.40072 | TCGTTTGGAAAAAAA CTTCAAT GTGAAA ATTGAAG AAGACCCTAAAAAAA ispH 1045566 - 1046390 + | 4-hydroxy-3-methylbut-2-enyl diphosphate reductase rpsA 1046511 - 1048181 + | 30S ribosomal protein S1 TERM 941 1048714 - 1048695 - g 70 -3.6 -4.99035 | CTATTTAGACAAAAA CAAAAAAG AACG CTTTTTAG CTGATTTAGACTATT HPAG1_0994 1048210 - 1048758 + | hypothetical protein HPAG1_0995 1048774 - 1050348 + | D-3-phosphoglycerate dehydrogenase TERM 942 1050480 - 1050468 - g 74 -4.8 -4.79756 | opp_overlap 1050477 TATAGAAGCGAAAAA GCCT GATGG AGGC AAAGCCCTTTTATTC HPAG1_0996 1050358 - 1052208 + | hypothetical protein TERM 943 1052354 - 1052339 - g 70 -3.2 -5.00616 | overlap 1052340 GGCTGTTTCAAAAAA CGCTTC CCCA GAAGCT ATCCAACATTACTAC TERM 944 1052857 - 1052881 + G 89 -5.7 -5.4505 | overlap 1052852 TAGCGATTGCTTGCG GGGCGAATCTT TTA AGGATTGGCTC TTTTTTGTTCAAAGA HPAG1_0997 1052232 - 1052900 + | hypothetical protein HPAG1_0998 1052902 - 1053660 + | hypothetical protein HPAG1_0999 1053664 - 1054599 + | CheA-MCP interaction modulator HPAG1_1000 1054656 - 1057064 + | autophosphorylating histidine kinase HPAG1_1001 1057061 - 1057558 + | CheA-MCP coupling protein TERM 945 1057636 - 1057619 - T 89 -8.5 -4.7373 | opp_overlap 1057621 TTATCCCATTAAAAA GCTTGAT TTTA ATCAAGC GATAATGTTTGATTC HPAG1_1002 1058318 - 1057818 - | adhesin-thiol peroxidase TERM 946 1058951 - 1058938 - g 74 -3.9 -5.14477 | TAGACACTCAAAAAA TTGAA ATCA TTCAA ACGAGCAATGCTCAA HPAG1_1003 1058541 - 1059182 + | iron-dependent superoxide dismutase TERM 947 1059196 - 1059223 + F 76 -6.4 -4.64763 | opp_overlap 1059208, overlap 1059197 1059198 AAGCGTTACGGGCTA TTGTGGTTTAAA GGTT TTTAAACCACGC TTCTTTTTTGAATGA TERM 948 1059197 - 1059222 + F 84 -9.9 -3.37773 | opp_overlap 1059208, overlap 1059196 1059198 AGCGTTACGGGCTAT TGTGGTTTAAA GGTT TTTAAACCACG CTTCTTTTTTGAATG TERM 949 1059198 - 1059221 + F 82 -11.2 -2.61579 | opp_overlap 1059208, overlap 1059197 1059196 GCGTTACGGGCTATT GTGGTTTAAA GGTT TTTAAACCAC GCTTCTTTTTTGAAT TERM 950 1059428 - 1059441 + G 79 -3.1 -5.4756 | TTTATGATTTGGGCT GTTCT ACCG GGAAC TTTTTTATTGCGCTT TERM 951 1059548 - 1059535 - g 70 -2.5 -5.11112 | AAAGCGCAAGAAAAA TTAAA AGAT TTTAA CAATGTCCGTTTTGA HPAG1_1004 1059235 - 1059954 + | hypothetical protein HPAG1_1005 1061846 - 1059987 - | primosome assembly protein PriA TERM 952 1060203 - 1060217 + g 87 -6.4 -5.30199 | TTGGGAGGCTTTTAG GCTCAA TTG TTGGGC TTTTTCTTCGTTTTT TERM 953 1060535 - 1060549 + g 70 -2.8 -5.055 | TTATCATTTGAGTGC CGATTA AGA TATTCG TTTTTTGAGCGTTGA TERM 954 1061251 - 1061261 + g 70 -2.6 -5.01676 | TCTTGCGAATAAAGC TTTT CTA AAAA TTGTTTTTTTTGATT HPAG1_1006 1062067 - 1061831 - | hypothetical protein HPAG1_1007 1062307 - 1062080 - | hypothetical protein HPAG1_1008 1062489 - 1063235 + | hypothetical protein HPAG1_1009 1063773 - 1063243 - | hypothetical protein HPAG1_1010 1063947 - 1065170 + | zinc-metalloprotease TERM 955 1065617 - 1065637 + G 79 -5.4 -4.86731 | opp_overlap 1065635, overlap 1065635 AAAGCTTTAGAAGTG GCGTCCAA AAATA TTGAACGC TTTTGTTTAAAAGAG HPAG1_1011 1065167 - 1065991 + | S-adenosylmethionine-dependent methyltransferase TERM 956 1066402 - 1066445 + G 71 -6.7 -4.11216 | opp_overlap 1066402 CAAGTGTTGAAAAAT TCGCTCACCACTTTGGC TATGGGGGGC GCTAAGGGGGGGAGCGA TTTTGACCCTAAAGG TERM 957 1066988 - 1066971 - g 73 -5.5 -4.53303 | overlap 1066974 CACCCCCACAGAAAA TTACCCC AAAG GGGGGAA TGCAGTGTGGCATGT TERM 958 1067046 - 1067070 + G 73 -10.1 -2.91924 | opp_overlap 1067044 1067041 1067040, overlap 1067045 1067048 GACTGAAAATGAATT GAGCGTTTTAG ACG CTAAAACCCTC CTTTCTAACGGGTGC HPAG1_1012 1066063 - 1067409 + | glutamate dehydrogenase HPAG1_1013 1068799 - 1067423 - | alpha 1,3-fucosyltransferase TERM 959 1067819 - 1067785 - G 73 -7.4 -4.07568 | opp_overlap 1067773, overlap 1067786 TGTCGTTTTCTAAAA TCGTTTTAAAAAAATC TAG GATTTTTTTAAAACTC AAATCTTGGTAAAAG TERM 960 1067818 - 1067786 - G 78 -10.9 -3.04398 | opp_overlap 1067773, overlap 1067785 GTCGTTTTCTAAAAT CGTTTTAAAAAAATC TAG GATTTTTTTAAAACT CAAATCTTGGTAAAA HPAG1_1014 1071619 - 1068809 - | cytochrome c-type biogenesis protein TERM 961 1068852 - 1068834 - G 71 -7.4 -3.85909 | overlap 1068829 TTAGGCAAACTCAAA TGGCGTTT GAA ATACGCCA AGATCACGAGAGCAA TERM 962 1070086 - 1070108 + g 79 -3.5 -5.42514 | GCGCGTTAGGGGATT TTTGATTGA CTTCT TCAACCAAA TTTTTTAATTTATAC TERM 963 1070377 - 1070389 + g 77 -7.7 -4.24326 | AATCCTGGACTTGAA GCCTT TGA AAGGC TTTTAAGTGGTCTTT HPAG1_1015 1072292 - 1071606 - | thiol:disulfide interchange protein hemH 1073373 - 1072366 - | ferrochelatase HPAG1_1017 1073429 - 1073860 + | hypothetical protein TERM 964 1074241 - 1074213 - g 76 -3.1 -5.29385 | opp_overlap 1074219 1074238, overlap 1074215 AACGCAATGAAAAAA TAGACAGCGCT AAATTAG AGCGCTTTCAA AAAATTTTGATCCAT HPAG1_1018 1073861 - 1074541 + | hypothetical protein HPAG1_1019 1076667 - 1074565 - | outer membrane protein dcd 1077399 - 1076827 - | deoxycytidine triphosphate deaminase HPAG1_1021 1077517 - 1077999 + | biotin carboxyl carrier protein TERM 965 1079106 - 1079085 - g 81 -5.9 -5.09173 | GAAGATCCTAAAAAA TTCTACCCA AGCC CGGGTAAAA TCACCGAATGGATCG TERM 966 1079355 - 1079327 - g 71 -6.8 -4.12942 | TGAAATGCTTGAAAA TGCGGATTTTAG GCAAG CAAAAATCCACA CGAAGTATTTAGAAG HPAG1_1022 1078005 - 1079381 + | biotin carboxylase HPAG1_1023 1079474 - 1080295 + | putative type II DNA modification enzyme HPAG1_1024 1080265 - 1080435 + | putative type II DNA modification enzyme TERM 967 1080592 - 1080580 - g 71 -4.8 -4.59511 | AAGAGTTTTTAAAAA GCGT GCTTA ACGC TATAGATGGAGTGAT HPAG1_1025 1080435 - 1080743 + | hypothetical protein HPAG1_1026 1080748 - 1080984 + | hypothetical protein HPAG1_1027 1081077 - 1081670 + | hypothetical protein HPAG1_1028 1081667 - 1082803 + | spore coat polysaccharide biosynthesis protein C nrdF 1083113 - 1084138 + | ribonucleotide-diphosphate reductase subunit beta pcm 1084148 - 1084777 + | protein-L-isoaspartate O-methyltransferase HPAG1_1031 1084788 - 1085825 + | hypothetical protein truA 1085826 - 1086554 + | tRNA pseudouridine synthase A HPAG1_1033 1087582 - 1086548 - | UDP-glucose 4-epimerase TERM 968 1089462 - 1089446 - g 73 -6.7 -4.26189 | overlap 1089438 GCAGAAATTTTAAAA TTCATTT TTA AAATGAA ACTTCAAGGCAACAT HPAG1_1034 1088114 - 1089649 + | putative outer membrane protein TERM 969 1090131 - 1090141 + G 71 -4 -4.96468 | overlap 1090129 1090135 GAGCGAGCAAGGCGT TTGT GAA ACAA TTTTCTTTAAATTTG HPAG1_1035 1089671 - 1090423 + | short chain alcohol dehydrogenase HPAG1_1036 1091508 - 1090636 - | cysteine-rich protein C HPAG1_1037 1092204 - 1091578 - | 2-keto-3-deoxy-6-phosphogluconate aldolase TERM 970 1091789 - 1091771 - G 71 -6 -4.27192 | AAAGGGCCATTAAAA GCGTTTAA AAG TTTAACGC CCCCGCAATACTCTG HPAG1_1038 1094049 - 1092223 - | phosphogluconate dehydratase TERM 971 1093196 - 1093208 + g 74 -4.1 -5.1675 | ATTAAGCCTATAAGA GCGTT AAG AATGC TTTTTTCATCAATGA HPAG1_1039 1094115 - 1095392 + | glucose-6-phosphate 1-dehydrogenase HPAG1_1040 1095403 - 1096086 + | glucose-6-phosphate 1-dehydrogenase glk 1096073 - 1097083 + | glucokinase TERM 972 1098036 - 1098048 + G 70 -9.1 -3.24747 | opp_overlap 1098036 TATAGTGGCGAATTA GCCCT TGT AGGGC TTCCTCCTGTAGAAG HPAG1_1042 1097253 - 1098299 + | mannitol dehydrogenase TERM 973 1098309 - 1098334 + T 83 -10.5 -3.20361 | overlap 1098314 GATTAAAGGCTTTGA CTCTAGCTCTT TCTT AAGAGCTTGAG TTGGATTAGGATTTT HPAG1_1043 1099477 - 1098311 - | putative lipopolysaccharide biosynthesis protein TERM 974 1098567 - 1098580 + g 70 -3.1 -4.84761 | overlap 1098557 TAAGCGGCAATGCTG TGGTA GTGG TGCCA TTTTTCTCCACCTAT HPAG1_1044 1100811 - 1099615 - | putative lipopolysaccharide biosynthesis protein HPAG1_1045 1100986 - 1102293 + | hypothetical protein HPAG1_1046 1102992 - 1102300 - | outer membrane protein HorH HPAG1_1047 1103242 - 1103802 + | pyruvate flavodoxin oxidoreductase subunit gamma porD 1103818 - 1104210 + | pyruvate flavodoxin oxidoreductase subunit delta porA 1104220 - 1105443 + | pyruvate flavodoxin oxidoreductase subunit alpha HPAG1_1050 1105456 - 1106400 + | ferrodoxin oxidoreductase beta subunit TERM 975 1106415 - 1106436 + F 70 -8 -3.10091 | opp_overlap 1106415 1106414, overlap 1106418 ACTCTCCCATTAAAT CAAGGCGC TTTTTT GCGTCTTG TGTGATTTTCCCCCT HPAG1_1051 1106510 - 1107832 + | adenylosuccinate lyase TERM 976 1107866 - 1107856 - f 72 -2.6 -5.35224 | TTTACAAAAACAAAA TTAT AAA ATAA GCGGTAAAAATTGAA HPAG1_1052 1107897 - 1108730 + | outer membrane protein Horl HPAG1_1053 1110703 - 1108727 - | excinuclease ABC subunit B TERM 977 1109457 - 1109446 - G 73 -7.2 -4.09864 | overlap 1109436 ATTTAGGGTCTAAAA GCCC TGTA GGGC GAATGATTTGCTCAG TERM 978 1110402 - 1110390 - G 80 -7.7 -4.3255 | opp_overlap 1110388 1110386 TTTTCAATGAACAAA TCCCT CCT AGGGA TATAGCTTTCAGGCT TERM 979 1110784 - 1110773 - R 77 -3 -5.58209 | TCAAACTCAAAAAAA TCAA TGTT TTGA TAATGATCGTTTTTT HPAG1_1054 1111816 - 1110773 - | hypothetical protein HPAG1_1055 1112859 - 1112089 - | cysteine-rich protein X HPAG1_1056 1114829 - 1113126 - | gamma-glutamyltranspeptidase flgK 1116849 - 1115029 - | flagellar hook-associated protein FlgK HPAG1_1058 1117285 - 1116851 - | hypothetical protein HPAG1_1059 1118352 - 1117411 - | type II DNA modification enzyme HPAG1_1060 1118744 - 1118514 - | hypothetical protein HPAG1_1061 1118987 - 1118781 - | hypothetical protein HPAG1_1062 1119576 - 1119019 - | peptidyl-prolyl cis-trans isomerase TERM 980 1119374 - 1119354 - G 83 -9.7 -3.85817 | AGCTGCTTTCATAAA CCCCATAAG CTT CTTCTGGGG CGATGACAACCTCTT TERM 981 1119481 - 1119463 - G 76 -6.8 -4.33819 | opp_overlap 1119463, overlap 1119464 AGCACCTATAATAAA CTCTAAAG GCT CTTTAGAA ATGTTGCTGTCTAGC HPAG1_1063 1120558 - 1119563 - | hypothetical protein HPAG1_1064 1121105 - 1120566 - | peptidoglycan-associated lipoprotein precursor tolB 1122425 - 1121172 - | translocation protein TolB HPAG1_1066 1123246 - 1122422 - | hypothetical protein HPAG1_1067 1123666 - 1123265 - | biopolymer transport protein HPAG1_1068 1124288 - 1123719 - | biopolymer transport protein TERM 982 1124283 - 1124273 - G 81 -5.4 -5.0666 | TATTGAAAAAATAAA CGAT TGA ATCG AACATGATTATCCCC atpC 1124670 - 1124299 - | F0F1 ATP synthase subunit epsilon TERM 983 1124668 - 1124696 + g 70 -3.1 -4.93595 | opp_overlap 1124670 AATTTTCAACAAAGC CATGACAAAACCC TTA GGAATTTTTCATG TTTTTAGCTTTTTCT HPAG1_1070 1126090 - 1124681 - | F0F1 ATP synthase subunit beta HPAG1_1071 1127019 - 1126114 - | F0F1 ATP synthase subunit gamma TERM 984 1126211 - 1126194 - G 78 -7.1 -4.35483 | opp_overlap 1126193 1126190 CTTTATTATAAGAAA TGGTTAA AGTC TTAACCA AATCTTTAGCGTTAT TERM 985 1126950 - 1126961 + g 73 -2.2 -5.19916 | TGGAAACGAGTTTCA TCGC ATGC GTGA TTTTTTGCGTGTTTT HPAG1_1072 1128545 - 1127034 - | F0F1 ATP synthase subunit alpha HPAG1_1073 1129110 - 1128568 - | F0F1 ATP synthase subunit delta HPAG1_1074 1129626 - 1129111 - | F0F1 ATP synthase subunit B HPAG1_1075 1130064 - 1129630 - | F0F1 ATP synthase subunit B' HPAG1_1076 1131047 - 1130175 - | plasmid replication-partition related protein TERM 986 1130327 - 1130343 + g 71 -5.1 -4.53077 | overlap 1130328 CAGCGATGAGCGTTT GGGTTTC CTT GAAACCA TGTTTTTTATTTTCA TERM 987 1130328 - 1130342 + g 70 -8.6 -3.29406 | overlap 1130327 AGCGATGAGCGTTTG GGTTTC CTT GAAACC ATGTTTTTTATTTTC HPAG1_1077 1131845 - 1131051 - | spoOJ regulator HPAG1_1078 1132486 - 1131848 - | biotin--protein ligase TERM 988 1132206 - 1132216 + g 73 -6.8 -4.17523 | opp_overlap 1132195, overlap 1132195 TTAAGCCAGGTTTGA GAGC CTA GCTC TTTTAAAACTTCTTT fmt 1133400 - 1132483 - | methionyl-tRNA formyltransferase HPAG1_1080 1135849 - 1133402 - | hypothetical protein TERM 989 1134608 - 1134637 + g 76 -7.3 -4.2028 | overlap 1134600 AGTCTCATCAACATG TTGTTGGATATTT TCCT GAATTTCCAACAA TTCTTTATCTGTCTC HPAG1_1081 1137208 - 1135910 - | hypothetical protein TERM 990 1136659 - 1136672 + g 82 -3.9 -5.52384 | overlap 1136658 GCTCTTCTTGCTGCT TGAAT TTCA ATTCA TTTTTTTCATGCAAG HPAG1_1082 1137467 - 1137562 + | hypothetical protein HPAG1_1083 1138142 - 1137948 - | hypothetical protein TERM 991 1138424 - 1138403 - R 71 -2.3 -5.37865 | TCAAGAAGTAAAAAA GAAAGAATA AGCC CAATCTTTC AAAACTAAGCAAAAG TERM 992 1138468 - 1138493 + r 89 -9.2 -4.52589 | AAGTAATACTCTTTG GCTTTTAACA AGCGAA TGTTAAAAGC TTTTCTCTAGAAAGG TERM 993 1138537 - 1138520 - R 74 -9.1 -3.07291 | opp_overlap 1138520, overlap 1138510 1138507 AAGGAGGTGATCCAA CCGCAGG TTCA CCTACGG TTACCTTGTTACGAC TERM 994 1140042 - 1140065 + r 95 -12.6 -3.63627 | TTTGTTTTTTGATAG GCTGTTGTTA TTCC TAACAACAGC TTTAGCGTATCACAA HPAG1_1084 1141106 - 1140747 - | hypothetical protein HPAG1_1085 1141335 - 1141099 - | hypothetical protein TERM 995 1141620 - 1141640 + r 76 -5.5 -5.12707 | TTTTTGTATTTTGAT GGTAAAAAA CGC TTTTTAACC TTTTTTAAAATTTGA TERM 996 1141939 - 1141907 - R 85 -10.7 -3.38314 | overlap 1141905 TCCAACCCCTAAAGA GCGTTCTACCCATCA GCA TGATGGATAAAAAGC CTTAAAGTTAATGGC rplS 1142303 - 1141947 - | 50S ribosomal protein L19 TERM 997 1142280 - 1142295 + g 70 -3.2 -4.91573 | TTGAGCGTCTTCAAA CTGCTG AATG TAGCGG TTTTTCATGTGTTTT trmD 1143015 - 1142326 - | tRNA (guanine-N(1)-)-methyltransferase HPAG1_1088 1143570 - 1143016 - | hypothetical protein TERM 998 1143107 - 1143095 - G 86 -7.7 -4.96848 | overlap 1143075 TCTTGGATATAAAAA TCCCT ATA AGGGA TTAAAAAAATCTTAG HPAG1_1089 1143894 - 1143571 - | hypothetical protein rpsP 1144141 - 1143911 - | 30S ribosomal protein S16 HPAG1_1091 1145561 - 1144215 - | signal recognition particle protein TERM 999 1145444 - 1145458 + g 81 -2.8 -5.54192 | CTTTATGATGCACAT CGTTTT TTA AGAGCG TTTTTTTCAATTCGT valS 1148200 - 1145576 - | valyl-tRNA synthetase HPAG1_1093 1148331 - 1148738 + | flagellar assembly protein FliW TERM 1000 1148902 - 1148913 + G 74 -4.4 -5.00616 | AAATAGCCCCCTATT TAGC GAAC GCTA TTTTTTCAACACGCA murG 1148750 - 1149811 + | N-acetylglucosaminyl transferase TERM 1001 1150267 - 1150254 - g 74 -5.2 -4.71426 | GGGTTATCAACAAAA CGCC CAAAAT GGCG ATACAGGCAACAACC HPAG1_1095 1149919 - 1152009 + | outer membrane protein HopI TERM 1002 1152255 - 1152267 + G 76 -9.1 -3.63805 | opp_overlap 1152255 CTTTAAGCTCTCAAA GCGTC ATT GACGC TTTAGGCTATGGCGT TERM 1003 1152267 - 1152255 - g 74 -9.1 -3.57561 | opp_overlap 1152255 CTTTAAGCTCTCAAA GCGTC ATT GACGC TTTAGGCTATGGCGT TERM 1004 1155357 - 1155381 + G 73 -2.1 -5.28826 | overlap 1155350 GCGTGAAAGCGAATA TCTTTGCTTAT GGG GTAGGCACGGA TTTTTTATGGAATTT HPAG1_1096 1152032 - 1155754 + | outer membrane protein HopL TERM 1005 1155956 - 1155970 + G 75 -2.8 -5.18355 | opp_overlap 1155956 AACGCTATTGATATA CACCAA AAA TTCGTG TTTTTACTTTTTAAG TERM 1006 1156267 - 1156282 + G 72 -4.6 -4.67904 | opp_overlap 1156267 TAGCGTAGCGACAAA CGGGAG CGCG CTCGCG TTTTTAAGCTTGGTA HPAG1_1097 1155770 - 1156543 + | pyrroline-5-carboxylate reductase HPAG1_1098 1156571 - 1157104 + | cell filamentation protein HPAG1_1099 1157773 - 1157351 - | putative metalloprotease TERM 1007 1157801 - 1157817 + r 85 -10.9 -3.33261 | opp_overlap 1157801 AAGAAGTTTAAAAAA GCCCTAA AAT TTAGGGC TTATAAAGATTAAGC TERM 1008 1157817 - 1157801 - R 100 -10.9 -5.11937 | opp_overlap 1157801 AAGAAGTTTAAAAAA GCCCTAA AAT TTAGGGC TTATAAAGATTAAGC HPAG1_1100 1158321 - 1157827 - | flavodoxin FldA TERM 1009 1158374 - 1158352 - R 80 -9.8 -3.42257 | opp_overlap 1158353, overlap 1158353 GTTTAAAGATATTAA CGCACCCGCT TTT AGCGAGTGCT TGTGGGCGTAGTTTA TERM 1010 1158353 - 1158373 + r 85 -11.1 -3.32536 | opp_overlap 1158352 1158353 TTTAAAGATATTAAC GCACCCGCT TTT AGCGAGTGC TTGTGGGCGTAGTTT TERM 1011 1158373 - 1158353 - R 100 -13.3 -2.64872 | opp_overlap 1158353, overlap 1158352 TTTAAAGATATTAAC GCACCCGCT TTT AGCGAGTGC TTGTGGGCGTAGTTT HPAG1_1101 1158994 - 1158413 - | hypothetical protein HPAG1_1102 1159117 - 1159308 + | cation transport subunit for cbb3-type oxidase TERM 1012 1160098 - 1160113 + G 72 -3.3 -5.02476 | overlap 1160109 1160111 GTATGCGATCGGCGG CTCTA CCCCTT TAGAG TTTTTTAAACGCTGT HPAG1_1103 1159334 - 1160308 + | thioredoxin reductase HPAG1_1104 1161475 - 1160315 - | tetracycline resistance protein tetA(P) TERM 1013 1161610 - 1161599 - g 76 -7.2 -4.21086 | opp_overlap 1161598, overlap 1161600 GAAGAAATCAAAGAA GCGC ATAT GCGC GATTGGTTTTCCAAA TERM 1014 1162901 - 1162912 + G 79 -5.8 -5.00616 | GCCAAAGATTTAGCC CACC ATAG GGTG TTTTTTGGCAACCGC HPAG1_1105 1161539 - 1163176 + | glucose-6-phosphate isomerase TERM 1015 1163204 - 1163174 - f 90 -11.4 -3.51694 | AAGAATTACAACCAA TAGGCTTTATCTTA CAA CAAGATAAAACCTA AAAACAATGAAGCGA HPAG1_1106 1163482 - 1164897 + | outer membrane protein HofH TERM 1016 1165168 - 1165181 + T 100 -8.1 -5.4505 | opp_overlap 1165167 1165168 TTTATGGATTTAAAG GGGGT TAAA ACCCC TTTTTTATTCAAGCG HPAG1_1107 1167253 - 1165190 - | carbon starvation protein TERM 1017 1165357 - 1165369 + g 85 -5.5 -5.28778 | AAAAGGATTTTTGGA GCGTT TTT AGCGC TTTTTTATCGGTAGT TERM 1018 1165935 - 1165923 - G 85 -9.1 -4.2237 | AAACCAATCGCAAAA GTGGG CGC CCCAC CGGTGCGGCTCAAAA TERM 1019 1167385 - 1167371 - H 70 -7.2 -3.75817 | opp_overlap 1167370 1167371, overlap 1167369 TTCCCATAATAAAGA TTTGGA TTT TCCAAA CTTCTAGCAATTAGG TERM 1020 1167865 - 1167851 - g 73 -7.2 -4.07568 | opp_overlap 1167851 TTGGCCCTTTGAAAA TGATGT ATT ACATCA TTCTGCCTCAAAGCT HPAG1_1108 1167463 - 1168116 + | glutamine ABC transporter, permease protein TERM 1021 1168700 - 1168712 + G 75 -2.7 -5.22258 | CTTTGTGGTTTATGG CGTTA TCT TAATG TTTTATTTTAGTTTA HPAG1_1109 1168119 - 1168790 + | glutamine ABC transporter, permease protein TERM 1022 1168911 - 1168925 + G 70 -2.8 -5.05782 | opp_overlap 1168922 TTTAGGGCCTAGCGG GTGC GGGAAAA GCAC TTTTTTAAAATGCCT TERM 1023 1169435 - 1169405 - g 75 -2.6 -5.25803 | overlap 1169406 AATTCGCACAAAAAA TCGCTAGCAAAA TCGTGTT TTTTGATAGCGG TAAAATCGCTGAAGA HPAG1_1110 1168792 - 1169538 + | glutamine ABC transporter, ATP-binding protein TERM 1024 1170392 - 1170436 + G 73 -6.8 -4.15044 | gap 1, opp_overlap 1170397, overlap 1170396 1170397 TTTATGGCGATGAAA TCAAA-CCGGAAGAAATTATT TTTG AATGATTTCTTTAGGCTTTGA TTTCTTGACAGAGCG HPAG1_1111 1169587 - 1170420 + | glutamine ABC transporter, periplasmic glutamine-binding protein TERM 1025 1170460 - 1170474 + F 80 -7.2 -4.62069 | overlap 1170463 CAGAGCGCGTTTTTG TTGCTA AAT TAGCAA TTTTGTGATCTTTTT HPAG1_1112 1170542 - 1171093 + | hypothetical protein TERM 1026 1171121 - 1171146 + T 72 -2.6 -5.44198 | GCTTCATTCTTAAAA TCTCTTAATC TTTTGT GGTTAGGGGA TTTTTCTTATTTGTT HPAG1_1113 1172539 - 1171316 - | glucose/galactose transporter HPAG1_1114 1173975 - 1172668 - | hypothetical protein TERM 1027 1172796 - 1172776 - G 90 -8.9 -5.16133 | ACTATAAGACAAAAA GCCAAAGGC TAA GCCATCGGC AATGGAGAAAGTTAA TERM 1028 1173669 - 1173654 - G 74 -4.6 -4.9934 | overlap 1173655 ACAAGATCACAAAAA TCGCTC CCGA GAGCGC TACGATGCCTAAAGC TERM 1029 1174402 - 1174423 + r 80 -7.3 -4.72272 | opp_overlap 1174400 1174399 GAGGTTTTTAAAGCC CCCCCTTTT TTTA AAAAGAGGG TTTTTAATAAGCAAA HPAG1_1115 1176352 - 1174427 - | outer membrane protein HopQ TERM 1030 1175301 - 1175316 + g 72 -3.2 -5.0538 | ATTTCTGCTTGAGAT TGCGCA TTTT TGAGCA TTTTTTGAGCTAAAG TERM 1031 1175746 - 1175758 + g 77 -7.7 -4.19276 | opp_overlap 1175745, overlap 1175754 TGCTATTTAAAGGAG CAAGC CCA GCTTG TTTTAAAGCTTTTGA TERM 1032 1176576 - 1176549 - H 80 -7.1 -4.64861 | overlap 1176551 1176552 TTGTTGTAAAATAAA CACCCCCATAA GTGCAA TTATGGGGATA AATCCATAAAAGGAG TERM 1033 1176574 - 1176551 - H 74 -7.5 -3.93868 | overlap 1176549 1176552 GTTGTAAAATAAACA CCCCCATAA GTGCAA TTATGGGGA TAAATCCATAAAAGG TERM 1034 1176573 - 1176552 - H 71 -8.8 -2.95598 | overlap 1176551 1176549 TTGTAAAATAAACAC CCCCATAA GTGCAA TTATGGGG ATAAATCCATAAAAG HPAG1_1116 1176598 - 1176690 + | hypothetical protein TERM 1035 1176742 - 1176766 + T 100 -13.7 -4.55128 | opp_overlap 1176740, overlap 1176757 AGTTTTTCCAAAGTT CCCTTAAGGCT TTT AGCTTTAAGGG TTTTCCTTTAAAGCT TERM 1036 1176757 - 1176780 + T 85 -10.4 -3.54511 | opp_overlap 1176740, overlap 1176742 CCCTTAAGGCTTTTA GCTTTAAGGG TTTT CCTTTAAAGC TTATCCTTAACTTAT HPAG1_1117 1177514 - 1176813 - | purine-nucleoside phosphorylase HPAG1_1118 1178752 - 1177511 - | phosphopentomutase HPAG1_1119 1180020 - 1178764 - | pyrimidine nucleoside transport protein TERM 1037 1180963 - 1180981 + G 71 -3.8 -4.93296 | opp_overlap 1180949 1180966, overlap 1180949 1180950 1180966 AGCTCTTTTTTTGAA AAAGCGTT CAT GACGCTTA TTTTTGTGCTGATCC TERM 1038 1180966 - 1180978 + G 73 -5.5 -4.56153 | opp_overlap 1180949 1180966, overlap 1180949 1180950 1180963 TCTTTTTTTGAAAAA GCGTT CAT GACGC TTATTTTTGTGCTGA TERM 1039 1180978 - 1180966 - g 71 -4.8 -4.56597 | opp_overlap 1180949 1180950 1180966 1180963, overlap 1180949 TCTTTTTTTGAAAAA GCGT TCATG ACGC TTATTTTTGTGCTGA HPAG1_1120 1180333 - 1181664 + | multidrug-efflux transporter TERM 1040 1181730 - 1181708 - g 85 -7 -5.07107 | GAAATTTCTAAAAAA GTCTTACACA TTG TGGGCAAGAC CAACGCCACTTACAA TERM 1041 1182360 - 1182348 - g 77 -6.3 -4.65263 | ATTTCTTAAAAGAAA TGCAA AAC TTGCA CCCTCGTTTCTTTGA HPAG1_1121 1181684 - 1182445 + | hypothetical protein TERM 1042 1182440 - 1182459 + T 74 -2.9 -5.45652 | GCTAAATATTTAGAC GCTTAAG CTTTCA TTTAAGC TTTTTTGTTGAGCAT HPAG1_1122 1183605 - 1182454 - | Na+/H+ antiporter HPAG1_1123 1185010 - 1183631 - | hypothetical protein TERM 1043 1183668 - 1183681 + gH 76 -2.3 -5.40004 | opp_overlap 1183668, overlap 1183650 TTTTTCTCTTTATAA GTGGT AAAA ACCCC TTTTTTGATTTCGTA TERM 1044 1184707 - 1184693 - GH 73 -5.6 -4.65933 | overlap 1184695 CATGCTCAAAATAAA GGCGCT TAT AGCGAC AAAATAAAACACGCT TERM 1045 1185081 - 1185065 - gR 74 -5.1 -4.67608 | opp_overlap 1185065 1185080 TATTTTAACATAAAA GGAGAGA CAA TCTATCC GTTAGTGCGGTTATT HPAG1_1124 1184984 - 1185184 + | hypothetical protein HPAG1_1125 1186346 - 1185171 - | sugar efflux transporter TERM 1046 1185346 - 1185335 - G 81 -5.8 -5.00884 | AGCTCCCCGAAAAAA TCGC GCTC GCGA CATCCGTGGCATCTG TERM 1047 1185483 - 1185473 - G 85 -5.4 -5.19879 | TTTTAAACACAAAAA GCAA GAG TTGC GGGCAAATGACTAAA TERM 1048 1186288 - 1186278 - G 74 -4.6 -4.85782 | GGTGTTAAAAATAAA CGCC GAA AGCG AAAACACAAAAACCC TERM 1049 1186730 - 1186711 - g 78 -4.2 -5.3167 | gap 1 TAAAAATAAAGAAAA TGGCCC-GC ACC GCTGGGACA AATTGCACAAAGATT HPAG1_1126 1186622 - 1187365 + | alpha-carbonic anhydrase TERM 1050 1187397 - 1187374 - T 100 -13.2 -4.35524 | opp_overlap 1187368 CCGCTAAATTTAAAA CCCCCCTCTT TTAA AAGAGGGAGG TAAAAATCATTCTTC HPAG1_1127 1188635 - 1187586 - | hypothetical protein TERM 1051 1188769 - 1188759 - R 71 -5.4 -4.65916 | opp_overlap 1188759 1188754 TCCATTCCAACAAAA CTTG ATA CAAG TTTTCCTTATACCTT TERM 1052 1188812 - 1188788 - R 70 -7.1 -3.63627 | TCCTTATACCTTAAA CTCACACCCTT TTA AAGGGAGCAAG CTAATAAGCGATTTT HPAG1_1128 1190063 - 1188900 - | hypothetical protein TERM 1053 1190217 - 1190207 - R 71 -5.4 -4.65916 | opp_overlap 1190207 TCCATTCCAACAAAA CTTG ATA CAAG TTTTCCTTGATACCC HPAG1_1129 1191415 - 1190348 - | hypothetical protein TERM 1054 1191565 - 1191555 - R 71 -5.4 -4.65916 | opp_overlap 1191555 TCCATTCCAACAAAA CTTG ATA CAAG TTTTCCTTGATACCC HPAG1_1130 1192883 - 1191843 - | aspartate-semialdehyde dehydrogenase TERM 1055 1192046 - 1192056 + g 76 -4.6 -5.055 | CATCGCAAACAACCA CGCT AGG GGCG TTTTTTAAAACTTCA hisS 1194198 - 1192870 - | histidyl-tRNA synthetase TERM 1056 1193103 - 1193113 + g 70 -8.2 -3.64703 | opp_overlap 1193084 1193102 TTTGCCTTAAAGACT CCGC TAA GCGG TTTGCATAAGAAAAA HPAG1_1132 1194260 - 1195309 + | ADP-heptose-LPS heptosyltransferase II TERM 1057 1195495 - 1195452 - T 78 -9 -3.405 | opp_overlap 1195466, overlap 1195454 1195457 1195466 AGAGAAATTATAAGA TAGTATCCAAAAAAGCGTTT TTAA AAACGCTTCTTTGGAGTCAA AGCCATTAGGCCACT TERM 1058 1195493 - 1195454 - T 88 -11.6 -3.25809 | opp_overlap 1195466, overlap 1195452 1195457 1195466 AGAAATTATAAGATA GTATCCAAAAAAGCGTTT TTAA AAACGCTTCTTTGGAGTC AAAGCCATTAGGCCA TERM 1059 1195490 - 1195457 - T 100 -16.3 -2.79641 | opp_overlap 1195466, overlap 1195454 1195452 1195466 AATTATAAGATAGTA TCCAAAAAAGCGTTT TTAA AAACGCTTCTTTGGA GTCAAAGCCATTAGG TERM 1060 1195481 - 1195466 - T 89 -7.6 -5.11613 | opp_overlap 1195466, overlap 1195457 1195454 1195452 ATAGTATCCAAAAAA GCGTTT TTAA AAACGC TTCTTTGGAGTCAAA TERM 1061 1195466 - 1195481 + T 74 -7.6 -3.9392 | opp_overlap 1195466 1195457 1195454 1195452 ATAGTATCCAAAAAA GCGTTT TTAA AAACGC TTCTTTGGAGTCAAA HPAG1_1133 1195890 - 1195501 - | hypothetical protein TERM 1062 1195798 - 1195787 - G 76 -2.2 -5.36441 | TTGTCATATAAAAAA CGCT TGGG AGCA TCAGCCATTTTTCTT TERM 1063 1195843 - 1195820 - G 85 -6.8 -5.00884 | opp_overlap 1195826, overlap 1195826 1195828 ATTTTTCTTAAAAAA TAAAAACGCT CAAA AGCGTTTTTT AAGGCGGTTTCTAGG TERM 1064 1195826 - 1195837 + g 81 -5.8 -5.01732 | opp_overlap 1195826 1195820 1195828 CTTAAAAAATAAAAA CGCT CAAA AGCG TTTTTTAAGGCGGTT TERM 1065 1195837 - 1195826 - G 100 -5.8 -5.75538 | opp_overlap 1195826, overlap 1195820 1195828 CTTAAAAAATAAAAA CGCT CAAA AGCG TTTTTTAAGGCGGTT HPAG1_1134 1198322 - 1196244 - | elongation factor G HPAG1_1135 1198801 - 1198334 - | 30S ribosomal protein S7 rpsL 1199224 - 1198817 - | 30S ribosomal protein S12 TERM 1066 1199215 - 1199226 + g 70 -3 -5.01845 | TAATCAACTGATTGA TAGT AGGC ACTA TTTTTCCTTATTCTA HPAG1_1137 1207985 - 1199313 - | DNA-directed RNA polymerase subunit beta/beta' TERM 1067 1199592 - 1199606 + g 79 -5 -5.1675 | overlap 1199593 GATCATACGAGCGTT TTCTTC TTT GAAGAG TTTTTTACTGACTAA TERM 1068 1202833 - 1202843 + g 71 -6.8 -4.0896 | TTGCCTTTAATGATC TCGC TGA GCGA TTTTAAAGGGCGTTT TERM 1069 1203749 - 1203760 + g 76 -4.4 -5.02074 | opp_overlap 1203749 TAACTTCCCCATAAC TCCA AGAA TGGA TTTTTTCAGGGCTGG TERM 1070 1207128 - 1207140 + g 71 -4.1 -4.89521 | overlap 1207117 CATAGGGTATTCCAC CCATT CTA GATGG TTTTCTTTAAGCTCT rplL 1208592 - 1208215 - | 50S ribosomal protein L7/L12 rplJ 1209132 - 1208638 - | 50S ribosomal protein L10 rplA 1209945 - 1209241 - | 50S ribosomal protein L1 TERM 1071 1209423 - 1209439 + g 77 -5.1 -4.83615 | TCGCTTTGCCAATAG GGGCA TGAACAT TGCCC TTTTTATCCACCCTG rplK 1210415 - 1209990 - | 50S ribosomal protein L11 nusG 1210963 - 1210433 - | transcription antitermination protein NusG secE 1211169 - 1210990 - | preprotein translocase subunit SecE TERM 1072 1211280 - 1211270 - R 70 -4 -4.95854 | TAAAAAATTTAAAAA CAAT CCA ATTG AAACACAAATTTGAT rpmG 1211585 - 1211427 - | 50S ribosomal protein L33 HPAG1_1145 1212152 - 1211619 - | translation elongation factor EF-Tu HPAG1_1146 1212817 - 1212092 - | translation elongation factor EF-Tu TERM 1073 1212977 - 1212993 + H 74 -9.5 -2.65815 | opp_overlap 1212967 1212989 TTGAACCGCCGACCT CTTCCTT ACC AAGGAAG TGCTCTGCCTCTGAG TERM 1074 1214944 - 1214955 + G 75 -3 -5.24129 | GGTGTGCAAAATGGC TCAT ATTT ATGA TTTTTTATGCGAGCA HPAG1_1147 1213514 - 1215250 + | ABC transporter ATPase HPAG1_1148 1215927 - 1215259 - | hypothetical protein HPAG1_1149 1217019 - 1216030 - | type II adenine specific DNA methyltransferase TERM 1075 1216960 - 1216944 - G 71 -6.6 -3.98236 | AAATCGCACCAGAAA GGTTGT CCCCT ACAACC GCATGGATATTTTCT HPAG1_1150 1217276 - 1217028 - | iceA1 HPAG1_1151 1217715 - 1217269 - | iceA1 HPAG1_1152 1218315 - 1217800 - | serine acetyltransferase TERM 1076 1218893 - 1218862 - R 73 -9 -2.88236 | gap 1, opp_overlap 1218870, overlap 1218871 TAAACGGATATTATA GCTAAATCA-TGCTT TTT AAGCAATAATTTAGC CCATCAAAAAACCCT HPAG1_1153 1219225 - 1218908 - | F0F1 ATP synthase subunit C HPAG1_1154 1221424 - 1219358 - | polynucleotide phosphorylase/polyadenylase TERM 1077 1220421 - 1220407 - G 75 -5.6 -4.67982 | overlap 1220411 CCCTAGTGAATAAAA TGGAGC TAT GCGCCA TAGGGAGCAAATCGC HPAG1_1155 1222137 - 1221427 - | hypothetical protein HPAG1_1156 1224407 - 1222146 - | organic solvent tolerance protein TERM 1078 1223355 - 1223343 - G 71 -6.3 -4.14633 | CAGGTTTAAAAAATA CTTGA TAT TCAAG CCGTAATAATTGTTT HPAG1_1157 1224889 - 1224410 - | hypothetical protein TERM 1079 1224926 - 1224901 - R 83 -7 -4.89063 | opp_overlap 1224906 1224917 GCATTCAAAAACAAA CAAGACAAAC TCTTTG GTTTGTCTTA AACTTTAACCTTTAA HPAG1_1158 1226212 - 1224938 - | glycinamide ribonucleotide synthetase TERM 1080 1225528 - 1225554 + g 73 -9.4 -3.11118 | opp_overlap 1225525 TAGAGAAAAAGTTTG CAGGAGCGATGG CCC CCATACCTCCTG TATTGACTCCATTAT HPAG1_1159 1226332 - 1226532 + | hypothetical protein HPAG1_1160 1226975 - 1226595 - | hypothetical protein TERM 1081 1226713 - 1226724 + g 72 -4.4 -4.70353 | opp_overlap 1226707 TTGCACAATTCCAAT GCTT TGTT AAGC TTTTGATTTCTTATC HPAG1_1161 1227461 - 1227138 - | hypothetical protein HPAG1_1162 1228541 - 1227855 - | ABC transporter, ATP-binding protein HPAG1_1163 1229239 - 1228535 - | hypothetical protein HPAG1_1164 1232120 - 1229280 - | D-lactate dehydrogenase TERM 1082 1229987 - 1229998 + g 85 -5.8 -5.18371 | AAATAACTTTTTCTT CGCT CTTA AGCG TTTTATTTTCTAAAG TERM 1083 1230163 - 1230151 - G 76 -3.3 -5.27335 | opp_overlap 1230155 CTTTTTAAAGAAAAA CGAGC CGC GCTTG TGGTGGTTTGCATGT TERM 1084 1231269 - 1231287 + g 76 -7.4 -4.25283 | TAAAATTTGAGCGGC TTTGGCGC ATC GCTCCAAA TTTTCATAAAACAAT HPAG1_1165 1232192 - 1232524 + | hypothetical protein hemD 1232527 - 1233207 + | uroporphyrinogen-III synthase HPAG1_1167 1233255 - 1233647 + | hypothetical protein HPAG1_1168 1234756 - 1233698 - | coproporphyrinogen III oxidase TERM 1085 1234966 - 1234952 - g 72 -4.3 -4.66535 | AAGTTTGAAAAGAAA GCTTT AGGCA AAAGC AAAATCGTCAACATG HPAG1_1169 1234832 - 1235122 + | hypothetical protein TERM 1086 1235165 - 1235177 + F 87 -5.5 -5.61689 | opp_overlap 1235165, overlap 1235130 GGGTGCTATTGAAAT GGGTT TCA AGCCC TTTTTTCTTAATTTT HPAG1_1170 1235283 - 1235750 + | dinucleoside polyphosphate hydrolase TERM 1087 1236820 - 1236830 + G 71 -6.8 -4.08767 | TCGCATTCTGGGGTA GCGA GTA TCGC TTTTAAAGCCCTAGC HPAG1_1171 1235752 - 1236969 + | aspartate kinase HPAG1_1172 1236966 - 1237508 + | hypothetical protein TERM 1088 1237561 - 1237571 + G 79 -6.8 -4.56597 | opp_overlap 1237561 1237559 AGAAAGCTTAGAAGA GGCT GCA AGCC TTTTTGAACGCCACA HPAG1_1173 1237505 - 1238161 + | DNA polymerase III subunit delta' HPAG1_1174 1238158 - 1239300 + | dihydropteroate synthase HPAG1_1175 1239849 - 1239388 - | hypothetical protein TERM 1089 1239951 - 1239941 - H 71 -5.4 -4.63218 | GGGTTTTTAACAAAA CAAG AGA CTTG GAAAGCTTAAAAGAG HPAG1_1176 1240239 - 1241147 + | hypothetical protein HPAG1_1177 1241138 - 1242385 + | hypothetical protein TERM 1090 1242776 - 1242756 - g 85 -9 -4.15044 | TGTTTTGGGAAGAAA GGTGCAAC GATTT GTCGCACC AGATTTTGAATAAAA HPAG1_1178 1242464 - 1243015 + | hypothetical protein TERM 1091 1243730 - 1243709 - g 76 -2.3 -5.36018 | gap 1 ATGAAAAAAAAGAAA TTAGCG-GGA TTT TCCTCTCTAA TGGGCCTGGCGATCC HPAG1_1179 1243015 - 1244142 + | carbamoyl phosphate synthase small subunit TERM 1092 1244289 - 1244253 - f 72 -8.9 -2.73875 | opp_overlap 1244253 1244252 1244261 TCTCTTGCAATAGTA TTCTCTCGCAATAACTA TTA TTGTTATTGCGACAAAA CTTTTAGAAGGAGTT TERM 1093 1244528 - 1244510 - g 72 -9.6 -3.04322 | opp_overlap 1244508 CGCAAGGTTTGAATA CCGCTAAG TGG CTTAGCGA AGAGTTTTTATTAGA amiF 1244308 - 1245312 + | formamidase TERM 1094 1245333 - 1245358 + T 85 -6.9 -5.02201 | AACTTTATATTTTTG CTAGAACCTGT TTCT AAAGGTTCTGG TTTTTCTCCTATTTT HPAG1_1181 1245648 - 1245559 - | hypothetical protein HPAG1_1182 1246323 - 1245751 - | Maf-like protein TERM 1095 1245876 - 1245890 + g 76 -7.1 -4.1552 | GAAAGTCCTCTAACC GCACG CAACC CGTGC TTTCTTGCCACAATC alaS 1248868 - 1246325 - | alanyl-tRNA synthetase TERM 1096 1246507 - 1246523 + g 79 -3.6 -5.42198 | overlap 1246506 1246510 TTTTCACCCCGCATG CGAGAG TGATT CGCTCG TTTTCTTTTTTAAAC TERM 1097 1247246 - 1247263 + g 89 -5.5 -5.4477 | overlap 1247235 1247247 CTCATCGCTCACTTG CGCGATC ACTT GATCGCC TTTTTTTAGCGCTTT TERM 1098 1247247 - 1247262 + g 79 -9 -3.85235 | overlap 1247235 1247246 TCATCGCTCACTTGC GCGATC ACTT GATCGC CTTTTTTTAGCGCTT TERM 1099 1248512 - 1248530 + g 74 -4.6 -4.86621 | GCTGATGTATAAATC TTTAGGCT TAA ACCCTAAA TTTTTGGTTACAAAT TERM 1100 1248861 - 1248851 - G 75 -5.4 -4.77925 | opp_overlap 1248859 AAAAAATTGTAAAAA TTCG TTG CGAA TATCCATGGGTATTC HPAG1_1184 1248987 - 1249217 + | hypothetical protein TERM 1101 1249287 - 1249324 + T 70 -4.3 -4.88295 | opp_overlap 1249295, overlap 1249290 1249291 1249292 CTTTACTGCTTGGTT GGATTTAACGCTTTGAT TTGG ATTAAAGCGTTAGGTTG TTTTTAACTTTATTT TERM 1102 1249290 - 1249321 + T 85 -8.2 -4.50298 | opp_overlap 1249295, overlap 1249287 1249291 1249292 TACTGCTTGGTTGGA TTTAACGCTTTGAT TTGG ATTAAAGCGTTAGG TTGTTTTTAACTTTA TERM 1103 1249291 - 1249320 + T 78 -9.5 -3.28552 | opp_overlap 1249295, overlap 1249290 1249287 1249292 ACTGCTTGGTTGGAT TTAACGCTTTGAT TTGG ATTAAAGCGTTAG GTTGTTTTTAACTTT TERM 1104 1249292 - 1249319 + T 82 -10.8 -2.55505 | opp_overlap 1249295, overlap 1249291 1249290 1249287 CTGCTTGGTTGGATT TAACGCTTTGAT TTGG ATTAAAGCGTTA GGTTGTTTTTAACTT HPAG1_1185 1249855 - 1249607 - | hypothetical protein TERM 1105 1249733 - 1249718 - G 85 -5.4 -5.20328 | CCCCAAAAAAACAAA GGGTTC AAAA AAACCC CCAAAAAAAAGAGGA TERM 1106 1249797 - 1249756 - G 70 -8.9 -3.12884 | gap 1, overlap 1249770 AAAGAGGATTTAAGA GAGGGGGTTCAAAAGAAAAA AGA TTTTTCATC-AAACCCCCCC CAAAAAAAGAATTTA HPAG1_1186 1252387 - 1250171 - | outer membrane protein HopU TERM 1107 1252089 - 1252075 - G 77 -10 -3.27489 | overlap 1252073 TTAATGCCAAAGAGA CGGCTT GAT AAGCCG GGGAGTTGGTTTTTT rpsR 1253169 - 1252912 - | 30S ribosomal protein S18 HPAG1_1188 1253737 - 1253192 - | single-strand DNA-binding protein rpsF 1254175 - 1253747 - | 30S ribosomal protein S6 HPAG1_1190 1255341 - 1254319 - | DNA polymerase III subunit delta HPAG1_1191 1257265 - 1255331 - | 3'-5' exoribonuclease R TERM 1108 1255914 - 1255898 - G 80 -2.2 -5.59502 | TAAAAAAGGAAAAAA GCCC ATGTTTTTA GGGC GCACAATCTCATAAT TERM 1109 1256372 - 1256386 + g 82 -8.6 -4.26076 | opp_overlap 1256371 ATACACTAAAGCCAG GCGTTT TTC AAACGC TTTTAATGAGCATGC aroE 1258056 - 1257265 - | shikimate 5-dehydrogenase HPAG1_1193 1258654 - 1258064 - | hypothetical protein TERM 1110 1258574 - 1258554 - G 71 -3.9 -4.96848 | overlap 1258558 TTTTTCACATAAAAA CCAAGCGCA GCA TGCGCTAAA GCATACAACAACATG TERM 1111 1258570 - 1258558 - G 79 -9.1 -3.91281 | overlap 1258554 TCACATAAAAACCAA GCGCA GCA TGCGC TAAAGCATACAACAA HPAG1_1194 1259709 - 1258663 - | oligopeptide ABC transporter, permease protein TERM 1112 1258900 - 1258880 - G 72 -3.1 -5.04987 | overlap 1258870 1258882 AACATGCCTAAAAAA GCTTGCGGA AAA CCCGCCACC ACTAATAAAATCGCA HPAG1_1195 1260971 - 1259706 - | oligopeptide ABC transporter TERM 1113 1259838 - 1259827 - G 73 -2.2 -5.30616 | TTAGGCAAATAAAAA TGCG GTAT CACA TAAAACCCCCACAAC TERM 1114 1260159 - 1260181 + g 70 -8.4 -3.34398 | overlap 1260157 TTTAGCAAAGGCTAG GGCCAGTCTT TCA AAGGCTGGGC TGTTTAAAAGCAAAG TERM 1115 1260587 - 1260598 + g 70 -5.8 -4.42619 | AGAAAAACCCTTGCA TGCC GCTT GGCA TTTTGTGGGCTATTA TERM 1116 1260728 - 1260718 - G 70 -3.2 -5.00616 | GCCCCGCTTAAAAAA GCCT GTA AAGC AATGGTTTCGTCTTT HPAG1_1196 1261486 - 1260956 - | oligopeptide ABC transporter TERM 1117 1261445 - 1261431 - G 79 -8.6 -4.05446 | TCGCCCAAGTATAAA TAAGGC GTA GCCTTA AGGAAATAAAACACC HPAG1_1197 1262506 - 1261487 - | tryptophanyl-tRNA synthetase HPAG1_1198 1263275 - 1262538 - | biotin synthesis protein secG 1263392 - 1263982 + | preprotein translocase subunit SecG frr 1263982 - 1264539 + | ribosome recycling factor TERM 1118 1265022 - 1265011 - g 76 -7.2 -4.18494 | opp_overlap 1265019 CATTCTCATTTAAAA GCCC AAGA GGGC GCATGTTTGCCTAGC pyrE 1264543 - 1265148 + | orotate phosphoribosyltransferase TERM 1119 1265209 - 1265197 - g 80 -7.7 -4.37092 | ACGCGCTTTAGAAAA CCCTT TAA AAGGG CTGAATCTCTCTTTA HPAG1_1202 1265138 - 1265602 + | hypothetical protein TERM 1120 1266049 - 1266064 + G 82 -4 -5.52384 | overlap 1266051 GGCGAAGAGGTGCCT TTGCTT GAAG AAGCGA TTTTTTTAGTCAAAG HPAG1_1203 1265599 - 1266303 + | hypothetical protein HPAG1_1204 1266396 - 1266797 + | NADH dehydrogenase subunit A HPAG1_1205 1266797 - 1267276 + | NADH dehydrogenase subunit B HPAG1_1206 1267273 - 1268073 + | NADH dehydrogenase subunit C TERM 1121 1269118 - 1269136 + G 80 -4.6 -5.31456 | opp_overlap 1269118 TGCCCCCACAGAAAG CCCTAA AGGGGAA TTAGGG TTTTTTATCCATTCA HPAG1_1207 1268075 - 1269304 + | NADH dehydrogenase subunit D HPAG1_1208 1269301 - 1269531 + | NADH-ubiquinone oxidoreductase chain E TERM 1122 1270206 - 1270216 + G 73 -6.8 -4.18197 | opp_overlap 1270206 1270205, overlap 1270194 ACAGCCTTTAAAGAG GGCA TTT TGCC TTTTAAATCGCAACT HPAG1_1209 1269534 - 1270520 + | NADH-ubiquinone oxidoreductase chain F TERM 1123 1271861 - 1271844 - g 77 -6.3 -4.59773 | GCGCAGCTCTAAAAA GCTTAGA AGAT TCCAAGC AAAGCATTGTGGATG TERM 1124 1271928 - 1271915 - g 76 -2.4 -5.52909 | GAAGAGCGAAAAAAA GCTT TAGAAC AAGC CGAGCAAGGGTGCAG HPAG1_1210 1270517 - 1273051 + | NADH dehydrogenase subunit G TERM 1125 1273792 - 1273805 + G 80 -2.3 -5.56263 | TTTTTAGCGGAATAC GCGCA TTTA TTCGC TTTTTCTTTTGTGAT HPAG1_1211 1273048 - 1274037 + | NADH dehydrogenase subunit H HPAG1_1212 1274048 - 1274710 + | NADH dehydrogenase subunit I HPAG1_1213 1274703 - 1275251 + | NADH dehydrogenase subunit J HPAG1_1214 1275248 - 1275550 + | NADH dehydrogenase subunit K TERM 1126 1276950 - 1276968 + G 82 -3.8 -5.40004 | overlap 1276940 TTTAGCGGTCATTGC CGGGTTTT TTG AAGAGCCG TTTTTTCATTTCATC TERM 1127 1277043 - 1277058 + G 76 -9 -3.7104 | TCTTTTAATCAGTAT CACCAC CATC GTGGTG TTGTTGAGTATCGCT HPAG1_1215 1275553 - 1277391 + | NADH dehydrogenase subunit L TERM 1128 1277453 - 1277463 + G 71 -6.8 -4.06687 | TCCCCATGCTGAGCG CGCT ATT AGCG TTCTTTATGAGCGAT TERM 1129 1277497 - 1277510 + G 71 -6.7 -3.97659 | GCGAGTAGGGCGTAT GCGAT TGTC ATCGC TTTGATTGAATTGTT TERM 1130 1277628 - 1277649 + G 78 -3.7 -5.19251 | gap 1 CGTGAATTACCATGT GGGCGTTGAT GGC ATCG-CGCTC TTTTTGTTGCTCTTA HPAG1_1216 1277395 - 1278933 + | NADH dehydrogenase subunit M TERM 1131 1279451 - 1279467 + G 74 -5.1 -4.68593 | GCGAGTGCGTTTTTT GCTATGG GGG CTATGGC TTTTTACCTGCTCAC TERM 1132 1280022 - 1279995 - g 72 -3.4 -5.03747 | gap 1, opp_overlap 1279997 1279998, overlap 1279997 1279998 AAAGCCGGGAAAAAA CATGGGATGAACG CTA CGATCACCCC-TA TTCTAAATTCAACGG TERM 1133 1280021 - 1279997 - g 71 -6.3 -4.13963 | opp_overlap 1279997 1279998, overlap 1279995 1279998 AGCCGGGAAAAAACA TGGGATGAACG CTA CGATCACCCCT ATTCTAAATTCAACG TERM 1134 1280020 - 1279998 - g 72 -9.8 -3.07655 | opp_overlap 1279998 1279997, overlap 1279997 1279995 GCCGGGAAAAAACAT GGGATGAACG CTA CGATCACCCC TATTCTAAATTCAAC TERM 1135 1280200 - 1280212 + G 85 -6.9 -5.011 | GATGTTAGCTAATAG CGCGG TGG CTGCG TTTTATTATTTCCGT HPAG1_1217 1278920 - 1280392 + | NADH dehydrogenase subunit N TERM 1136 1280554 - 1280544 - g 86 -8.2 -4.91873 | TATACCAATGAAAAA CCGC CAA GCGG GATTGAAGCGTCTTT TERM 1137 1282131 - 1282116 - g 76 -3.2 -5.27335 | overlap 1282118 TCGCTCAAAGAAAAA GCGCAA ATTA TTGCCC TAAACGCTTTAAAAG TERM 1138 1282448 - 1282434 - g 74 -4.2 -5.1417 | CTAGAAAATGAAAAA GACCCT AAA AGCGTC AAAATTTATGCCACA TERM 1139 1282578 - 1282566 - g 77 -7.7 -4.24326 | AAAGATTATTCAAAA GCGTT AGA AACGC TAGACAAGCTTTTAA HPAG1_1218 1280382 - 1282787 + | paralysed flagella protein TERM 1140 1282936 - 1282947 + G 76 -3.6 -5.27938 | GGGCATGACGCCAGG GTGC ATGG GCGC TTTTTGTTTGAAGCT TERM 1141 1283927 - 1283915 - g 89 -5.5 -5.4505 | CGCCTGAAGAAAAAA TCGCC GTG AGCGA AGAAGAAAAATTTGA HPAG1_1219 1282789 - 1284168 + | phosphomannomutase HPAG1_1220 1284349 - 1284768 + | hypothetical protein HPAG1_1221 1285061 - 1285402 + | hypothetical protein HPAG1_1222 1286037 - 1285423 - | hypothetical protein HPAG1_1223 1286687 - 1286025 - | nicotinamide mononucleotide transporter TERM 1142 1286532 - 1286520 - G 74 -6.3 -4.39414 | opp_overlap 1286520 1286519, overlap 1286525 AAGACCAAACACAAA GCAAA TTG TTTGC CTTTCTCCGGCAAAA HPAG1_1224 1287342 - 1286872 - | hypothetical protein HPAG1_1225 1287731 - 1287366 - | hypothetical protein HPAG1_1226 1288422 - 1289075 + | putative transcriptional regulator TERM 1143 1289132 - 1289103 - T 83 -6.6 -4.82901 | gap 1, overlap 1289104 GTGCCGTTAGAAAAA CGCAAGAGA-AGA AGATA TCTATCTCTTGCA AAACGATTATTGAGC TERM 1144 1289131 - 1289104 - T 71 -7.9 -3.49419 | gap 1, overlap 1289103 TGCCGTTAGAAAAAC GCAAGAGA-AGA AGATA TCTATCTCTTGC AAAACGATTATTGAG TERM 1145 1289142 - 1289170 + T 82 -7.5 -4.69664 | CTTGCAAAACGATTA TTGAGCGTAAGCT TCT AGTTTGAGCTCAA TTTTTACCTCATCTC HPAG1_1227 1289687 - 1289139 - | hypothetical protein HPAG1_1228 1289811 - 1290548 + | acid phosphatase lipoprotein HPAG1_1229 1290617 - 1291675 + | hypothetical protein TERM 1146 1291868 - 1291882 + F 72 -5 -4.87389 | CCTATTTATCTATTT CTTGTA GAA TACGAG TTTATTTTTAGCGTA TERM 1147 1292232 - 1292255 + G 77 -6 -4.58283 | overlap 1292225 AGCTCTTTGAGCCTA GCCCTTTTGA CGCT TTAAGGGGGC TTTTTAAAAGCGTTA TERM 1148 1292322 - 1292334 + G 76 -2 -5.41746 | CAGGCGTTTTTTCTT TTGA AATGC TCAA TTTTTTTGAAGACTT HPAG1_1230 1291907 - 1293409 + | anthranilate synthase component I TERM 1149 1293638 - 1293652 + G 74 -6.4 -4.46233 | opp_overlap 1293638 1293639, overlap 1293639 TGGCTAAAAAGAAAT TCCCTA TTT TAGGGG TTTGTTTAGGCTTAC HPAG1_1231 1293406 - 1293990 + | anthranilate synthase component II HPAG1_1232 1293987 - 1294994 + | anthranilate phosphoribosyltransferase TERM 1150 1294995 - 1294979 - f 71 -8.7 -2.8786 | opp_overlap 1294978, overlap 1294978 GCAAAAAATCATAAG GCTAAGC CAT GCCTAGC GTGTTAGAAAACATC HPAG1_1233 1294987 - 1296345 + | bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase HPAG1_1234 1296346 - 1297527 + | tryptophan synthase subunit beta trpA 1297524 - 1298312 + | tryptophan synthase subunit alpha HPAG1_1236 1298489 - 1298776 + | hypothetical protein TERM 1151 1298783 - 1298795 + T 82 -6.3 -5.08178 | overlap 1298790 TTCTTATAAGCGGGT TTTGC TAG GCAAA TTTTTGTCTGTATAT rplQ 1299836 - 1299486 - | 50S ribosomal protein L17 HPAG1_1238 1300870 - 1299836 - | DNA-directed RNA polymerase subunit alpha rpsD 1301508 - 1300882 - | 30S ribosomal protein S4 HPAG1_1240 1301913 - 1301518 - | 30S ribosomal protein S11 rpsM 1302298 - 1301936 - | 30S ribosomal protein S13 rpmJ 1302415 - 1302302 - | 50S ribosomal protein L36 infA 1302712 - 1302494 - | translation initiation factor IF-1 TERM 1152 1302670 - 1302651 - G 77 -7.8 -4.14511 | opp_overlap 1302657 AACTCCACCTTAAAA GTGGCGTT AGGC AACGCCTC AATCACTTTCCCATC HPAG1_1244 1303473 - 1302712 - | methionine aminopeptidase secY 1304735 - 1303473 - | preprotein translocase subunit SecY rplO 1305180 - 1304773 - | 50S ribosomal protein L15 rpsE 1305655 - 1305194 - | 30S ribosomal protein S5 rplR 1306011 - 1305652 - | 50S ribosomal protein L18 rplF 1306558 - 1306022 - | 50S ribosomal protein L6 rpsH 1306964 - 1306569 - | 30S ribosomal protein S8 rpsN 1307159 - 1306974 - | 30S ribosomal protein S14 rplE 1307714 - 1307169 - | 50S ribosomal protein L5 rplX 1307948 - 1307727 - | 50S ribosomal protein L24 rplN 1308316 - 1307948 - | 50S ribosomal protein L14 rpsQ 1308578 - 1308318 - | 30S ribosomal protein S17 HPAG1_1256 1308792 - 1308592 - | 50S ribosomal protein L29 rplP 1309204 - 1308779 - | 50S ribosomal protein L16 rpsC 1309911 - 1309207 - | 30S ribosomal protein S3 rplV 1310283 - 1309915 - | 50S ribosomal protein L22 rpsS 1310574 - 1310293 - | 30S ribosomal protein S19 rplB 1311416 - 1310586 - | 50S ribosomal protein L2 TERM 1153 1310615 - 1310627 + g 87 -3.3 -5.73978 | TTCTGGAAATGATGA GCTTG TCG CTAGC TTTTTTCTTTCTCGT rplW 1311714 - 1311433 - | 50S ribosomal protein L23 rplD 1312365 - 1311718 - | 50S ribosomal protein L4 TERM 1154 1312194 - 1312213 + g 79 -4.9 -5.0925 | AAGGCTTCCTACCGC CCCCGCT CACTTC AGCGCGG TTTTTACTTTTAGCG rplC 1312975 - 1312400 - | 50S ribosomal protein L3 rpsJ 1313326 - 1313012 - | 30S ribosomal protein S10 TERM 1155 1314388 - 1314403 + G 86 -7.6 -5.0916 | opp_overlap 1314376 AACCATGAGCTTTAC TCCCAT GATA ATGGGA TTTTTATCTTGCGCG TERM 1156 1314578 - 1314590 + G 83 -4.9 -5.31519 | CCCCCTACAAACACC TCAAT TTC ATTGA TTTTTCTTTGGATAT HPAG1_1266 1313536 - 1314624 + | hypothetical protein TERM 1157 1314876 - 1314895 + F 73 -4.3 -5.04265 | overlap 1314874 1314878 TGGAGAAATGCTACC TACCCTA AAAGCG TAGGGTG TTTTTAATATTTTTT TERM 1158 1315363 - 1315343 - g 86 -9.7 -4.08216 | opp_overlap 1315342 CCATTTTGGCTAAAA GGTTCGTGG ATA CCACCAACC ATCGTGTGTATGTCA HPAG1_1267 1314928 - 1315506 + | hypothetical protein HPAG1_1268 1316094 - 1315480 - | ribonuclease HII TERM 1159 1316181 - 1316191 + r 77 -4 -5.51165 | TAAACTCTGTTAATT CTTT TTC AAAG TTTTTTTGCGCTTTT HPAG1_1269 1316371 - 1316186 - | hypothetical protein fumC 1317784 - 1316393 - | fumarate hydratase TERM 1160 1317555 - 1317580 + g 71 -3.9 -4.87786 | CCTTTTAAAATGCAA TCGCACGCCTT GATA ATGGCTTGTGA TTTTTCTAGGCTTAA HPAG1_1271 1317960 - 1318337 + | hypothetical protein HPAG1_1272 1318342 - 1319580 + | hypothetical protein HPAG1_1273 1319577 - 1320593 + | cation efflux system protein TERM 1161 1320706 - 1320691 - g 81 -6.8 -4.82901 | opp_overlap 1320679 1320691 TGTGGGCGATAAAAA GCGTCC GTTT AGACGC TTTGCCGGATTTAAG TERM 1162 1321351 - 1321335 - g 79 -5.1 -5.00884 | opp_overlap 1321338, overlap 1321338 1321339 1321340 1321342 ATTGTGGTTAAAAAA GAAGGGA CTA TCCCTTT AAAAATCAAAGATAT TERM 1163 1321348 - 1321338 - g 79 -6.8 -4.61482 | opp_overlap 1321338, overlap 1321335 1321339 1321340 1321342 GTGGTTAAAAAAGAA GGGA CTA TCCC TTTAAAAATCAAAGA TERM 1164 1323622 - 1323636 + G 87 -6.4 -5.20333 | opp_overlap 1323622 GGGGCATGATAAGCA GCGTTG TTT TAACGC TTTTTATTATCCCTA HPAG1_1274 1320594 - 1323707 + | cation efflux system protein HPAG1_1275 1324051 - 1323704 - | hypothetical protein HPAG1_1276 1324731 - 1324045 - | hypothetical protein HPAG1_1277 1325851 - 1324742 - | co-chaperone and heat shock protein TERM 1165 1324962 - 1324980 + g 70 -3.1 -4.87893 | overlap 1324957 1324956 1324974 GCAAAAGTCTGCCTG TCTCTGG CGTTT CTAGGGA TTTTTAATTCCAGTT TERM 1166 1325624 - 1325638 + g 83 -6.4 -5.05782 | overlap 1325612 1325611 GCTCTGGCTCGCGCC GGCTTG GTT TAAGCC TTTTTTACCATACCT TERM 1167 1326195 - 1326205 + G 76 -2.4 -5.42259 | opp_overlap 1326202 1326203 AACAGCACCCTAACT AGCC AAA GGCG TTTTTTTAACGCTAG TERM 1168 1326741 - 1326727 - g 75 -5.7 -4.72486 | TAGAAACTTTAAAAA CGCAT TTTTT ATGCG ATAAAGAAAATCTAA TERM 1169 1326808 - 1326794 - g 77 -7.8 -4.28361 | CCAACGCTACCAAAA CGCCCT CAT AGAGCG GGACAAGGAATTAAA TERM 1170 1326880 - 1326848 - g 75 -2.9 -5.20331 | gap 1 AAATAATAAAGAAAA GCATGCTC-TAATC TTAGCC AATTACGAGCATAC TTTAAAAACCTTAAA HPAG1_1278 1325976 - 1327106 + | hypothetical protein HPAG1_1279 1327308 - 1327550 + | hypothetical protein HPAG1_1280 1327620 - 1327736 + | hypothetical protein HPAG1_1281 1327807 - 1327998 + | hypothetical protein trmU 1329120 - 1328059 - | tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase TERM 1171 1328243 - 1328256 + g 71 -3.9 -4.88293 | opp_overlap 1328243 TCGCCATCTTTAAAA TCTTT CGTT AAAGA TTTGTTTTTAGCCTT TERM 1172 1328935 - 1328947 + g 79 -5.5 -4.84527 | GCCTAAAAACTCGCA CGCTT TTT GAGCG TTTTTAATGTATAAA HPAG1_1283 1329229 - 1329990 + | hypothetical protein HPAG1_1284 1330511 - 1329987 - | hypothetical protein HPAG1_1285 1330941 - 1330495 - | nickel responsive regulator TERM 1173 1331325 - 1331337 + G 85 -5.5 -5.24449 | overlap 1331326 TTGTTTTTGCGGTGC TTGGC GTG GCCAG TTTTTTAGCTTTGTG HPAG1_1286 1331201 - 1331701 + | biopolymer transport protein HPAG1_1287 1331698 - 1332087 + | biopolymer transport protein TERM 1174 1332123 - 1332139 + GF 83 -9.5 -3.90874 | TTTTAATTTCTTTTG CCCTATA CGC TATAGGG TTTGGCTATTTTTTA HPAG1_1288 1332053 - 1332910 + | siderophore-mediated iron transport protein TERM 1175 1333021 - 1333005 - f 84 -3.7 -5.79635 | overlap 1333006 1333014 AAAAAAAAAACAAAA TCTCTAA AAT TTAGAGC TAAAATTAGCCATAA TERM 1176 1333020 - 1333006 - f 74 -7.2 -3.99546 | overlap 1333005 1333014 AAAAAAAAACAAAAT CTCTAA AAT TTAGAG CTAAAATTAGCCATA TERM 1177 1333443 - 1333465 + G 70 -2.7 -5.10461 | gap 1 GCTCAATGCCGCTGT GGGCATGTGG CAAG TCATA-GCCC TTTTTATTGGCTGCG TERM 1178 1333524 - 1333505 - g 73 -7.2 -4.09805 | CTACCAACAATCAAA GCTACCAA TCGT TTGGTAAC ACACCAGCCCTTAAT TERM 1179 1335058 - 1335042 - g 95 -2.9 -6.09888 | overlap 1335044 GCCTAAGAAAAAAAA CAGCGAT CAC ACCGCTC AGCATGGCATTGAAC TERM 1180 1335056 - 1335044 - g 75 -5.5 -4.69435 | overlap 1335042 CTAAGAAAAAAAACA GCGAT CAC ACCGC TCAGCATGGCATTGA HPAG1_1289 1333105 - 1335183 + | outer membrane protein HPAG1_1290 1336051 - 1335323 - | hypothetical protein TERM 1181 1335662 - 1335682 + g 73 -8.4 -3.67971 | opp_overlap 1335661 1335658, overlap 1335658 TTCTATTAAAGCGAT GAAAAAGC CAAAC GCTTTTTC TTGGTGTTTTTCTTT TERM 1182 1335956 - 1335946 - G 71 -4 -4.84359 | TCACCGTGATAAAAA TGAT GTT ATCA ATCCCTAGAACGATC TERM 1183 1336052 - 1336073 + r 89 -8.8 -4.62783 | opp_overlap 1336056, overlap 1336056 GGACAAAAATTCCAT GAAAGGCT ACAACC AGCCTTTC TTTTTGAAATAAATC HPAG1_1291 1337014 - 1336058 - | magnesium and cobalt transport protein TERM 1184 1336794 - 1336779 - G 76 -4.7 -5.08824 | TGGTTAGTGAAAAAA GCGTT GATCGT AACGC TGGAGCTGTCTTCCC pgk 1338238 - 1337030 - | phosphoglycerate kinase HPAG1_1293 1339246 - 1338254 - | glyceraldehyde-3-phosphate dehydrogenase HPAG1_1294 1340036 - 1339335 - | uracil-DNA glycosylase HPAG1_1295 1340749 - 1340033 - | 1-acyl-glycerol-3-phosphate acyltransferase TERM 1185 1340641 - 1340612 - G 72 -3.3 -5.09426 | opp_overlap 1340612 1340628, overlap 1340619 GGTAAGGGGAAAAAA GCACGAACAAGCC CTAC GGCTGGAGCGGGC GTTATTGTTTTTGCG HPAG1_1296 1341851 - 1340736 - | hypothetical protein TERM 1186 1341032 - 1341018 - G 70 -2.7 -5.10208 | CAACGCCAAGAAAAA CACGC ACAAA GCGAG TAGCGCCACATTAGA TERM 1187 1341916 - 1341896 - R 71 -7.7 -3.56092 | opp_overlap 1341896, overlap 1341874 TTATCATTTTTCAAA TAAAAACCC CAT GAGTTTTTA TTTCTTCTTAGGCGC HPAG1_1297 1343293 - 1341914 - | carboxyl-terminal protease TERM 1188 1342137 - 1342147 + g 71 -4 -4.86613 | overlap 1342131 1342128 TTTAGATCCGCTTCT TTCA AGC TGAA TTTGTTTTCATTTTC TERM 1189 1342303 - 1342314 + g 76 -4.4 -5.02074 | GAATCTGCACGCTTC CCTT ACCA AAGG TTTTTTCACCGATAA TERM 1190 1342896 - 1342876 - G 72 -9.7 -3.05596 | opp_overlap 1342876 TATCGCCTGACTTAA CCCCAGCCT TGT AAGCTGGAG TGCCTTCTAAAGGAG TERM 1191 1343184 - 1343198 + g 81 -2.7 -5.64006 | overlap 1343185 TGCGGATCTTCTTTA ACCGG CTTGA CCGGC TTTTTTTCCTTAACT HPAG1_1298 1343732 - 1343505 - | type II restriction endonuclease HPAG1_1299 1344372 - 1343755 - | hypothetical protein TERM 1192 1344109 - 1344128 + g 79 -3.6 -5.47218 | overlap 1344110 TTCCCTTTTTTCTTT ATCCTTAT TGTA ATAAGGAA TTTTTTTAGATAAAG TERM 1193 1344110 - 1344127 + g 71 -7.1 -3.87608 | overlap 1344109 TCCCTTTTTTCTTTA TCCTTAT TGTA ATAAGGA ATTTTTTTAGATAAA HPAG1_1300 1345451 - 1344372 - | adenine specific DNA methyltransferase TERM 1194 1344450 - 1344466 + g 73 -8.7 -3.68726 | opp_overlap 1344449 CGCATAAAAAAATTT CCAGCCA TTA TGGTTGG TTCTATTCAAATATT HPAG1_1301 1349176 - 1345571 - | adenine specific DNA methyltransferase TERM 1195 1346540 - 1346518 - G 71 -7 -3.97368 | opp_overlap 1346517 GTTTGAATTGATAAA GGGGGTAA TTATATC CTACCCCC ATGCTTCCTGCCGAA TERM 1196 1347743 - 1347763 + g 93 -6.9 -5.46129 | AGGGGGGTTACCGGT GATGATAAG AAT CTTTTCATC TTTTTTAATTTCTTG TERM 1197 1348218 - 1348235 + g 82 -6.3 -4.9725 | gap 1, opp_overlap 1348202 1348198, overlap 1348207 1348218 TTCACCACAGAATCT GGG-GTGT AAT ACACGCCC TTTTTCTCTCGCAAT TERM 1198 1348423 - 1348442 + g 71 -5 -4.59773 | TTAAAAAATCCGCCA TTTCTCTG ATCA CAGCGAAA TTTTTAGGGATCGAA HPAG1_1302 1350023 - 1349202 - | nicotinate-nucleotide pyrophosphorylase HPAG1_1303 1351033 - 1350023 - | quinolinate synthetase TERM 1199 1350252 - 1350265 + g 70 -3.1 -4.86621 | gap 1, overlap 1350253 ACTAAATGGCTTTCA GT-GCC TAT GGCGAC TTTTTGATTAGGGCT TERM 1200 1350560 - 1350578 + g 83 -6.2 -5.07652 | CAAGCATTTATCCGG TAAAAAAA AGA TTTTTTTA TTTTGTTTTAGGGCA HPAG1_1304 1351826 - 1351023 - | phosphatidylserine decarboxylase HPAG1_1305 1352326 - 1351820 - | hypothetical protein HPAG1_1306 1352890 - 1352339 - | hypothetical protein ubiA 1353710 - 1352826 - | prenyltransferase TERM 1201 1353218 - 1353198 - GR 80 -6.2 -4.81249 | CCCTAAAGCCAAAAA GACATTCC ATAAA GGAATATC CCCTAAAACCGCCAC HPAG1_1308 1355052 - 1353739 - | competence locus E HPAG1_1309 1356515 - 1355049 - | replicative DNA helicase TERM 1202 1356034 - 1356047 + g 71 -6.7 -4.03141 | GTAATGAGATCCATC GTGCT TTCA AGCAC TTCTTTAATGCTCCT HPAG1_1310 1357920 - 1356526 - | hypothetical protein HPAG1_1311 1359041 - 1357923 - | putative histidine kinase sensor protein TERM 1203 1358109 - 1358130 + g 74 -5.3 -4.81249 | gap 1 TTCGGTGATCTTGTC TTTAGGG-AT TTC ATACCCTAAA TTTTTCACTTTCAAA TERM 1204 1358307 - 1358322 + g 74 -4.6 -4.96388 | overlap 1358309 GTGGTAGTCTATCAT CTCGCT AAAA AGCGTG TTTTCTTTGGTAATT TERM 1205 1359062 - 1359083 + r 95 -5.9 -5.88471 | opp_overlap 1359061 1359062 AAGAGCCTAAATAAG TCCCTAAAA AGAG TTTGAGGGA TTTTTTTTCATAGTG HPAG1_1312 1359732 - 1359091 - | response regulator TERM 1206 1360433 - 1360421 - gH 71 -6.3 -4.24404 | AGTGAAATCCTAAAA GATTG TTT CAATC AAGGCGTCAAACTTG HPAG1_1313 1359803 - 1361227 + | type III restriction enzyme M protein HPAG1_1314 1361166 - 1362269 + | adenine-specific DNA methylase TERM 1207 1362333 - 1362317 - g 71 -6.7 -4.00868 | CCACCGATAATGAAA TTTTTGT CGC ACAAAAA CTCGCTGAAGACGAA TERM 1208 1362909 - 1362889 - g 86 -9.9 -4.07885 | opp_overlap 1362887 TACCGCGCTCCAAAA GATTTTTTC ATA GAAAAAATC ACCCTTTTTTATTAC TERM 1209 1364268 - 1364253 - g 79 -3.4 -5.49729 | AATGAGCGAAAAAAA TTTTAA GGAT TTAAAA GAGTATTTTCATTTA TERM 1210 1364623 - 1364609 - g 100 -5.6 -6.09888 | CTCTAAGAAAAAAAA TCGCGC AAG GCGAGA TCGATCCTTATGATA HPAG1_1315 1362280 - 1364655 + | type III restriction enzyme R protein HPAG1_1316 1364755 - 1365189 + | type III restriction enzyme R protein HPAG1_1317 1365987 - 1365241 - | rod shape-determining protein TERM 1211 1365288 - 1365301 + g 79 -6.7 -4.56597 | opp_overlap 1365299 TTAAAAGTTTGGCGT CGCTT AAAA AAGCG TTTTTCAACACCGCG TERM 1212 1365312 - 1365299 - G 70 -3.1 -5.00616 | opp_overlap 1365288 GCGTCGCTTAAAAAA GCGTT TTTC AACAC CGCGCTTTTATAAGT HPAG1_1318 1367034 - 1365991 - | rod shape-determining protein TERM 1213 1366634 - 1366646 + g 70 -9.1 -3.24411 | overlap 1366632 1366633 ACTTCTCTAGCCCCA GCGCT TAA AGCGC TCTCTTTAACCGCAT clpX 1368000 - 1367077 - | ATP-dependent protease ATP-binding subunit HPAG1_1320 1368422 - 1368012 - | ATP-dependent protease ATPase subunit HPAG1_1321 1369236 - 1368424 - | UDP-N-acetylglucosamine acyltransferase fabZ 1369718 - 1369239 - | (3R)-hydroxymyristoyl-ACP dehydratase HPAG1_1323 1370289 - 1369900 - | flagellar assembly protein FliW TERM 1214 1370836 - 1370853 + G 77 -4.9 -4.84363 | TTTTTTGGTATCAAG GGATTTT AAGA GAAATCC TTTTTGCTAATTTAG TERM 1215 1371280 - 1371255 - g 76 -3.1 -5.25803 | opp_overlap 1371271 AATGTCTATAAAAAA CGCCACAAGCC TGAG GGCGTGAAACG CTATTTAGAAAGGAT HPAG1_1324 1370709 - 1371371 + | competence lipoprotein TERM 1216 1373438 - 1373463 + G 74 -4 -5.1523 | GGGAGTTTAGGCGAT GTGATGAAAG AATCCG CTCTCATCGC TTTTTCTGTTGTCAA TERM 1217 1373841 - 1373823 - g 71 -7.5 -3.96337 | TCAAAAATTACGAAA GGGATTT AGATG AAATCCC TGCTGAAGTGCGAGA HPAG1_1325 1371413 - 1373917 + | ATP-dependent protease TERM 1218 1374666 - 1374649 - g 75 -2.7 -5.18357 | GAAGCGATTAAAAAA TGCGA AAAAGAAA TCGCA CAAGCTAAGGCGTGG HPAG1_1326 1373914 - 1374753 + | prephenate dehydrogenase HPAG1_1327 1375819 - 1374956 - | putative endonuclease G TERM 1219 1375120 - 1375130 + g 73 -6.8 -4.3014 | opp_overlap 1375119 GGATATAAAAGCATT CGCT TTT AGCG TTTTCATAGCTATCT HPAG1_1328 1377640 - 1375931 - | putative type III restriction enzyme M protein TERM 1220 1377482 - 1377497 + g 71 -4 -4.94902 | AAGCGAATTAGCGAT CGTTTT GAAA AAAGCG TTTTTGTAGTCGTTG HPAG1_1329 1380255 - 1377643 - | putative type III restriction enzyme R protein TERM 1221 1377892 - 1377882 - G 73 -5.4 -4.56597 | GCGTTTGGGCAAAAA GGAT AAA ATCC GGCTCAAAACCTTGC TERM 1222 1379835 - 1379849 + g 76 -3.6 -5.26316 | overlap 1379836 ATGAGGCGCTGTCTG TGAAAT TCA ATTTCG TTTTTTCTAAAATGC HPAG1_1330 1380386 - 1381234 + | biotin synthase HPAG1_1331 1381234 - 1382112 + | putative ribonuclease N HPAG1_1332 1382348 - 1382139 - | hypothetical protein HPAG1_1333 1382618 - 1382436 - | hypothetical protein TERM 1223 1382816 - 1382767 - H 87 -11 -3.47349 | opp_overlap 1382767 1382768, overlap 1382768 1382773 TCTCTAAAGGCACAA GGAAAAGGGAGCTAAAGATAAA AACATA TTTACCCTTAACTCCCCTTTCT CTTTATAGGGAGCTG TERM 1224 1382815 - 1382768 - H 100 -14.5 -2.68088 | opp_overlap 1382768 1382767, overlap 1382767 1382773 CTCTAAAGGCACAAG GAAAAGGGAGCTAAAGATAAA AACATA TTTACCCTTAACTCCCCTTTC TCTTTATAGGGAGCT TERM 1225 1382810 - 1382773 - H 100 -10.8 -4.50661 | opp_overlap 1382768 1382767, overlap 1382768 1382767 AAGGCACAAGGAAAA GGGAGCTAAAGATAAA AACATA TTTACCCTTAACTCCC CTTTCTCTTTATAGG TERM 1226 1385373 - 1385385 + H 70 -6.2 -4.2354 | AGGTTCTATTTCACT CCGC TCACT GCGG TTCTTTTCACCTTTC TERM 1227 1385539 - 1385521 - H 73 -8.9 -2.80344 | overlap 1385520 CTGCTACCTAAGAAC GCCTTGT CGCAT ACAAGGC TATCACTTTCTATGG TERM 1228 1386156 - 1386188 + H 72 -5.7 -4.51847 | opp_overlap 1386156 1386164, overlap 1386164 1386174 TGCCAAGTTTAATCA GCTAATGAGCTTT TTATTTT AAAGCTTTTTAGC TTTTATAACTTGTTT TERM 1229 1386472 - 1386447 - H 89 -7.8 -5.00616 | opp_overlap 1386451, overlap 1386451 1386469 TGGGGGGCTAAAAAA TAAAGCTTTA AATAAA TAAAGCTTTA AGATAAATTAAGATA TERM 1230 1386468 - 1386451 - H 70 -4.2 -5.04249 | opp_overlap 1386451, overlap 1386447 GGGCTAAAAAATAAA GCTTTA AATAAA TAAAGC TTTAAGATAAATTAA HPAG1_1334 1386644 - 1386910 + | hypothetical protein HPAG1_1335 1387305 - 1387745 + | hypothetical protein TERM 1231 1388467 - 1388449 - g 72 -4.6 -4.7254 | ATCTGTGATGAAAAA GAAGAGTT AGA AAATCTTC AAAAAAAGATCAATG TERM 1232 1389351 - 1389332 - g 83 -3.6 -5.63517 | gap 1 GCGCTAAAGAAAAAA GTT-GGGCT AAA AACCCTAAC ATCGTGCATGCTTTA HPAG1_1336 1387792 - 1389624 + | hypothetical protein TERM 1233 1389670 - 1389641 - f 76 -6.5 -4.68593 | gap 1, overlap 1389644 1389646 GCGATCACTTAAAAA TAAGG-GGGCGTTT AAA AAACACCCACCCCA CAACAAGGAGGAACA TERM 1234 1389666 - 1389644 - f 85 -8.4 -4.4521 | overlap 1389641 1389646 ATCACTTAAAAATAA GGGGGCGTTT AAA AAACACCCAC CCCACAACAAGGAGG TERM 1235 1389664 - 1389646 - f 74 -9.6 -2.54902 | overlap 1389644 1389641 CACTTAAAAATAAGG GGGCGTTT AAA AAACACCC ACCCCACAACAAGGA HPAG1_1337 1389775 - 1390020 + | hypothetical protein HPAG1_1338 1389968 - 1390684 + | hypothetical protein TERM 1236 1390808 - 1390822 + T 77 -4.2 -5.33026 | CTTTGCGCGTTATTT CGCATT CAA AAGGCG TTTTTCTTTAAATTC HPAG1_1339 1391248 - 1390802 - | 7-cyano-7-deazaguanine reductase HPAG1_1340 1391308 - 1391649 + | hypothetical protein miaA 1391720 - 1392550 + | tRNA delta(2)-isopentenylpyrophosphate transferase TERM 1237 1393097 - 1393120 + G 73 -6.8 -4.15854 | TGAAGCCTTTTGTGA TTTTTGCGAG CGCG CTTGCAAGAA TTTTAAAATGGATTT HPAG1_1342 1392555 - 1393658 + | lipopolysaccharide 1,2-glucosyltransferase TERM 1238 1395041 - 1395055 + G 87 -8.6 -4.6575 | opp_overlap 1395040 CAGATGCTCTAAAGC GGGATT AGA AATCCC TTTTATGATTTATGT HPAG1_1343 1393668 - 1395293 + | hypothetical protein murB 1396132 - 1395353 - | UDP-N-acetylenolpyruvoylglucosamine reductase TERM 1239 1395549 - 1395569 + g 81 -7.5 -4.57073 | CCCTCTAAAAGCCTG CCCGCATGA TCG TTAGGCGGG TTTTTGAAACAGCTC fliQ 1396402 - 1396136 - | flagellar biosynthesis protein FliQ fliI 1397717 - 1396413 - | flagellum-specific ATP synthase TERM 1240 1397086 - 1397103 + g 70 -2.8 -5.04597 | ACCAACACGCAAGAG CTTAAA TCCCCT TTTAAG TTTTTCTCTATAAAT HPAG1_1347 1398632 - 1397718 - | type IV secretion system ATPase TERM 1241 1397851 - 1397839 - G 73 -7.7 -3.96216 | opp_overlap 1397839 1397836 TCCTTATCTAAAGAA TGCGT ATA ACGCA TGCTTAAATTCAGTG TERM 1242 1398481 - 1398465 - G 72 -4.4 -4.75404 | AAACCTCAGCAAAAA CGCCTT ATCAA AAAGCG CATGCCCTCTTTTTT ileS 1401411 - 1398649 - | isoleucyl-tRNA synthetase TERM 1243 1399479 - 1399459 - G 74 -4.7 -4.8622 | opp_overlap 1399458 1399459, overlap 1399461 TGTTTGAATGAAAAA GGTTTGAGA GAC CCTCAAATC GTTTTGATAGTCATT TERM 1244 1399724 - 1399734 + g 86 -8.2 -4.88736 | AAGATCACATCGCTA GGGC TTT GCCC TTTTTCTCCATGATA HPAG1_1349 1401692 - 1401435 - | hypothetical protein TERM 1245 1401996 - 1401976 - g 85 -2.5 -5.75945 | opp_overlap 1401991 1401995, overlap 1401995 AGCGCTTAAAAAAAA TCCTAAAGC AAA GCTCAAAGA CCCTAGAGGGCCTTT TERM 1246 1401991 - 1402012 + G 77 -8.7 -3.96327 | opp_overlap 1401976 1401995, overlap 1401995 TCCTAAAGCAAAGCT CAAAGACCC TAGA GGGCCTTTG TTTATGCTGGGGAGT TERM 1247 1402082 - 1402099 + G 75 -5.5 -4.79174 | overlap 1402083 1402084 GCCAAAGTCCAATCG TTCAGGC TAGA GCCTGGG TTTTATTACTTGGAT TERM 1248 1402279 - 1402303 + G 85 -5.7 -5.27335 | opp_overlap 1402281, overlap 1402281 ATTGAGCCTGATTAA AACCCCTAGAG GCT TTTTAGGGGTG TTTTTATTTGACAAC TERM 1249 1402281 - 1402301 + G 82 -8.3 -4.27026 | opp_overlap 1402281, overlap 1402279 TGAGCCTGATTAAAA CCCCTAGAG GCT TTTTAGGGG TGTTTTTATTTGACA HPAG1_1350 1401794 - 1402414 + | hypothetical protein HPAG1_1351 1403422 - 1402541 - | hypothetical protein TERM 1250 1403696 - 1403664 - R 89 -10.6 -3.85165 | TATTTTAAAGTCAAA GCCAGAGGCAACCC TAGTC AAGTTGCCCCTAGC CACACCGATATTACT HPAG1_1352 1403889 - 1403707 - | histidine-rich metal binding polypeptide TERM 1251 1403917 - 1403936 + r 74 -7.2 -4.00124 | opp_overlap 1403912 1403911 1403917, overlap 1403912 GATTAAAAATTTAAA TTCTAGCT CACT GGCTAGAA TTTCATTCTACAATA HPAG1_1353 1405158 - 1404085 - | hypothetical protein HPAG1_1354 1406144 - 1405155 - | polysialic acid capsule expression protein TERM 1252 1405430 - 1405442 + g 74 -4.8 -4.72386 | CATTGACTAAAATCG CGCT GCCTA AGCG TTTTTCACTCATTTC HPAG1_1355 1408203 - 1406128 - | ATP/GTP binding protein TERM 1253 1406726 - 1406742 + g 79 -5.1 -5.14563 | opp_overlap 1406729, overlap 1406729 TTGTCAAATTCTTGA TAAGCCA CTT TGGCTTC TTTTTTGATCAAGAA TERM 1254 1406729 - 1406739 + g 81 -6.8 -4.67552 | opp_overlap 1406729, overlap 1406726 TCAAATTCTTGATAA GCCA CTT TGGC TTCTTTTTTGATCAA TERM 1255 1408010 - 1408020 + g 80 -4.6 -5.31275 | TTTGGTTTTTTGTTG GGGC GAT GCTC TTTTTTATGGTGCGA TERM 1256 1408033 - 1408063 + g 78 -2.5 -5.4477 | overlap 1408028 CTCTTTTTTATGGTG CGAAGACGCTTCA TGGTT TGAAGACTCTGCG TTTTTTTGCGCGTTT TERM 1257 1408073 - 1408090 + g 80 -6.3 -4.67904 | TCTGCGTTTTTTTGC GCGTTTT CTCT GAAACGC TTTTTGCGGTTGGTG ksgA 1409056 - 1408241 - | dimethyladenosine transferase TERM 1258 1408348 - 1408368 + g 93 -6.9 -5.48303 | opp_overlap 1408340 1408339 1408348 CTAACACCTTATCAA GCTTTTCTT TAT AAGAAACGC TTTTTTTAAGATTGT TERM 1259 1408603 - 1408591 - G 70 -3.3 -4.97158 | GCACATCAAACAAAA GGGTA GCG TTCCC TATGGCGTGTGCTAA TERM 1260 1408799 - 1408773 - G 74 -5.2 -4.69962 | opp_overlap 1408774, overlap 1408774 GAGATCAAAAAATAA GGCTCTTCTTCT TTC AAAAAAAGAGCG TCTTTTTCCACTAAT TERM 1261 1408798 - 1408774 - G 70 -8.7 -3.4035 | opp_overlap 1408774, overlap 1408773 AGATCAAAAAATAAG GCTCTTCTTCT TTC AAAAAAAGAGC GTCTTTTTCCACTAA TERM 1262 1409288 - 1409259 - H 79 -7.3 -4.46212 | opp_overlap 1409259 1409264 TTTTGCATTATAAAA TGAAATCCTAGCT AATG AGCTAGAATTTAA ATTTCAATTAAAGGA HPAG1_1357 1409310 - 1409522 + | histidine and glutamine-rich metal binding protein TERM 1263 1409537 - 1409558 + F 77 -10.1 -2.77519 | overlap 1409534 1409534 ATTGGGGCGTTTGTG GGGGTGGCC TTAG GGCTACTCC TGGCTTTTAGCTCTT HPAG1_1358 1409851 - 1409943 + | hypothetical protein TERM 1264 1409959 - 1409982 + T 100 -11.8 -4.05788 | TTTTCTAAGAGCGTT CCCCTAAGTT TAAA AGCTTAGGGG TTTCCTTTAAAAAGC HPAG1_1359 1412718 - 1410157 - | hypothetical protein TERM 1265 1410521 - 1410511 - G 73 -5.4 -4.56597 | CCCGCCTTTTAAAAA CTCT AAT AGAG CGTGGCTAAAATATC TERM 1266 1411103 - 1411120 + g 95 -11.3 -4.86731 | TCTTTTTTATAGTTG CCCCCTA AATT TAGGGGG TTTTCTTTAGGAAGA TERM 1267 1411308 - 1411262 - G 83 -9.1 -4.12942 | gap 1, opp_overlap 1411276, overlap 1411267 CTAAATTTTTTAAAA TTAGACCCTAGCAAGTTTTTCA ACTT TGAAAAACTTGCTAAGAT-TAC GCCGTTTAATTCTTT TERM 1268 1411304 - 1411267 - G 100 -15.9 -3.09823 | opp_overlap 1411276, overlap 1411262 TTTTTTAAAATTAGA CCCTAGCAAGTTTTTCA ACTT TGAAAAACTTGCTAAGA TTACGCCGTTTAATT TERM 1269 1411412 - 1411422 + g 73 -6.8 -4.20769 | ATGAGATTGTCTCGT GCCA CTT TGGC TTTGTGTTCGCCTGT HPAG1_1360 1413600 - 1412719 - | formyltetrahydrofolate hydrolase HPAG1_1361 1414481 - 1413603 - | signal peptide protease IV TERM 1270 1413680 - 1413691 + g 72 -3.6 -5.00884 | opp_overlap 1413678 CTTTTTCAATGAAGC GCTC CATA GGGC TTTTTTCCAGCCAAT TERM 1271 1414243 - 1414258 + g 75 -5.4 -4.75063 | opp_overlap 1414243 ATCAAAAGCAAAACG CCCTTA ATGC TAGGGG TTTTTAGGATTTTAT TERM 1272 1414343 - 1414357 + g 76 -7 -4.42806 | overlap 1414345 TAGCGAGATTGGGTG GGGCGC TTG GCGCAC TTTCTTTGGCGCTAA HPAG1_1362 1414553 - 1414813 + | hypothetical protein TERM 1273 1414859 - 1414881 + F 71 -2.1 -5.42259 | gap 1, overlap 1414861 1414862 GTGTAAATTTTATAC GCTCTTTTTG TTTG TAAAAAG-GC TTTTTTTAGCGGTGG TERM 1274 1415484 - 1415472 - g 100 -6.3 -6.11392 | AAAGAAATAAAAAAA CATCA TAT TGATG TTAGCAAGATTGAAG TERM 1275 1415665 - 1415647 - g 74 -4.6 -5.00339 | ATGAAGAATTAAAAA TCACTCAT TCT ATTAGTGA GAGTCGCCTAATTCC HPAG1_1363 1415052 - 1415780 + | hypothetical protein TERM 1276 1416277 - 1416264 - g 79 -5.3 -5.06451 | GACCATCTCAAAAAA TCACT TTCA AGTGA AGCGTCTTATTATAT HPAG1_1364 1415832 - 1416953 + | lipoprotein HPAG1_1365 1416979 - 1417404 + | hypothetical protein TERM 1277 1417846 - 1417825 - T 71 -2.3 -5.37865 | TCAAGAAGTAAAAAA GAAAGAATA AGCC CAATCTTTC AAAACTAAGCAAAAG TERM 1278 1417890 - 1417915 + T 89 -9.2 -4.52589 | AAGTAATACTCTTTG GCTTTTAACA AGCGAA TGTTAAAAGC TTTTCTCTAGAAAGG TERM 1279 1417959 - 1417942 - T 74 -9.1 -3.07291 | opp_overlap 1417942, overlap 1417932 1417929 AAGGAGGTGATCCAA CCGCAGG TTCA CCTACGG TTACCTTGTTACGAC TERM 1280 1419464 - 1419487 + T 95 -12.6 -3.63627 | TTTGTTTTTTGATAG GCTGTTGTTA TTCC TAACAACAGC TTTAGCGTATCACAA HPAG1_1366 1420712 - 1419927 - | hypothetical protein TERM 1281 1420612 - 1420624 + g 70 -7.7 -3.71607 | GGATCAAGGGGCGGA TCGTC TCT GACGA TTTGAATGCTATTAG HPAG1_1367 1420827 - 1421318 + | peptidyl-prolyl cis-trans isomerase B, cyclosporin-type rotamase HPAG1_1368 1421337 - 1421567 + | carbon storage regulator TERM 1282 1421982 - 1421997 + G 76 -3.2 -5.21709 | overlap 1421984 GCATGGGATCTTTAG TGGGTG CGGA CACCAA TTTTTTCATCTCGCA HPAG1_1369 1421564 - 1422388 + | 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase smpB 1422366 - 1422824 + | SsrA-binding protein HPAG1_1371 1422827 - 1423279 + | biopolymer transport protein HPAG1_1372 1423290 - 1423691 + | biopolymer transport protein rpmH 1423763 - 1423897 + | 50S ribosomal protein L34 HPAG1_1374 1423857 - 1424357 + | ribonuclease P, protein component HPAG1_1375 1424330 - 1424686 + | hypothetical protein TERM 1283 1426046 - 1426079 + G 93 -9.8 -5.08255 | overlap 1426039 GCTCAGAGTGGATTC TATGGATTCATGAT TTATCC ATCATGGATCCGTA TTTTATTTTGCCGCT TERM 1284 1426317 - 1426306 - g 83 -3.6 -5.60689 | TTAGAGAACAAAAAA CGCA TGCA CGCG CAAAACAAAAAGGAA HPAG1_1376 1424692 - 1426338 + | putative inner membrane protein translocase component YidC TERM 1285 1426449 - 1426460 + GF 74 -5.8 -4.62872 | opp_overlap 1426448 GAAGTCATTCAAACG CCCT CTAA AGGG TTTTTAAGCATTGGT HPAG1_1377 1426338 - 1427144 + | hypothetical protein TERM 1286 1427555 - 1427543 - gf 74 -7.7 -3.92324 | TTTGTGAAGATGAAA GCGTT TTA AACGC TCTAGCCAGGCAGCT trmE 1427104 - 1428489 + | tRNA modification GTPase TrmE TERM 1287 1428505 - 1428516 + F 74 -5.8 -4.60889 | opp_overlap 1428504 1428505 AACCGCTTAAAGAAT GGGT TAAA ACCC TTTTTAGCGCTACTT TERM 1288 1428823 - 1428805 - g 72 -8.8 -3.48276 | opp_overlap 1428788 1428805, overlap 1428789 GGCTTTTTTATAGAA GCCGGGTT TGA AACCGGGC TATTACAAGGCACAC HPAG1_1379 1428703 - 1430943 + | outer membrane protein HomD HPAG1_1380 1431218 - 1431072 - | hypothetical protein HPAG1_1381 1431375 - 1431626 + | MobC-like protein TERM 1289 1432010 - 1431987 - g 90 -9.6 -4.32046 | CGCTTAAAAAGGAAA CCCCTAAGCT TTTA AACTCAGGGG AACTTTGGCTAATAC HPAG1_1382 1431707 - 1432237 + | cagY like protein thyX 1432897 - 1432271 - | FAD-dependent thymidylate synthase HPAG1_1384 1434712 - 1432919 - | D-fructose-6-phosphate amidotransferase TERM 1290 1434298 - 1434309 + g 70 -5.8 -4.35885 | TCAATAAATCGCTCT CGCT TTTA AGCG TTTCTTCTAATAAAT HPAG1_1385 1434952 - 1434713 - | hypothetical protein HPAG1_1386 1435537 - 1434995 - | purine nucleoside phosphorylase TERM 1291 1436832 - 1436817 - g 79 -3.2 -5.40072 | overlap 1436819 TTCGCGCCAAAAAAA TGTCGC TCTA GCGAGA AAATTAGTCGTGTAT dnaA 1435690 - 1437057 + | chromosomal replication initiation protein HPAG1_1388 1437278 - 1438717 + | hypothetical protein HPAG1_1389 1438897 - 1439649 + | exodeoxyribonuclease HPAG1_1390 1440281 - 1439646 - | hypothetical protein HPAG1_1391 1440632 - 1440285 - | hypothetical protein TERM 1292 1440391 - 1440403 + g 83 -4.9 -5.19998 | GCGTTTTCTTCATTA TTGAT TTC ATCAA TTTTATTTTCGTTAT HPAG1_1392 1440714 - 1442585 + | DNA recombinase HPAG1_1393 1442641 - 1444605 + | type III R-M system modification enzyme TERM 1293 1444745 - 1444755 + G 73 -5.4 -4.63932 | TTTTGAAATAGAGGC GATC AAA GATC TTTTATTAGAAAATA TERM 1294 1444816 - 1444801 - g 74 -4.6 -4.88687 | CGAAACAAAAAATAA CCCAGG GGAG CATGGG GATTGACAAGTCGTT HPAG1_1394 1444608 - 1447508 + | type III R-M system restriction enzyme TERM 1295 1447946 - 1447960 + G 70 -2.8 -5.06052 | opp_overlap 1447946, overlap 1447954 ACCCGCTCAGTAAAG CCTTTT GTC AAATGG TTTTGTATTTTTTAG TERM 1296 1448507 - 1448521 + G 88 -8.6 -4.72863 | GCATCTTGTTTTTAC GGCTTT TAG AAAGCC TTTTAATTTCTTTCA TERM 1297 1450405 - 1450388 - g 79 -6.9 -4.49958 | opp_overlap 1450388 ATTTCATCAAACAAA CGCCCCC TAAA GAGAGCG ATTTTAAATATTACG TERM 1298 1450485 - 1450500 + G 85 -7.6 -4.85782 | opp_overlap 1450484 CATGAAACAAAACGC GCTTTC AACA GAAAGC TTTATTTTTGCCAAC TERM 1299 1450697 - 1450709 + G 70 -7.7 -3.63744 | opp_overlap 1450697, overlap 1450695 GGGAGCGCACAGAGA GGCTT ATT AAGCC TATTTTAAGAGGGAA TERM 1300 1450973 - 1450989 + G 71 -3.7 -4.9138 | overlap 1450968 TTGTGTATGGTGAGA TCGTG CAAGAGC CACGA TTTTATTTAGATAAT HPAG1_1395 1447627 - 1451385 + | type IIS restriction-modification protein TERM 1301 1451407 - 1451432 + T 77 -8.3 -3.92577 | gap 1, opp_overlap 1451406 1451409, overlap 1451406 GATTTCCCACTTAAG GATGACCCCCTA ATC TAGGGGG-CAAC TCTTTTTAAGAATTA TERM 1302 1451430 - 1451409 - T 74 -9.5 -2.75064 | gap 1, opp_overlap 1451407 1451406, overlap 1451406 TTTCCCACTTAAGGA TGACCCCCTA ATC TAGGGGG-CA ACTCTTTTTAAGAAT TERM 1303 1451450 - 1451469 + T 80 -9.4 -3.53012 | opp_overlap 1451445 TTTTTAAGAATTAGC GTTTGATC ACTA GATCAAAC TTTAAACCCAAAAAA HPAG1_1396 1451537 - 1451445 - | hypothetical protein HPAG1_1397 1452622 - 1451939 - | hypothetical protein nusA 1453866 - 1452679 - | transcription elongation factor NusA HPAG1_1399 1455128 - 1453968 - | selenocysteine synthase TERM 1304 1454123 - 1454093 - G 77 -6.3 -4.56597 | opp_overlap 1454094, overlap 1454079 TGCCTTTTTGAAAAA GCTTTAAATAAAG TTTCT CACTATTTAAAGC GCGGGTGTTTTTGGA TERM 1305 1454372 - 1454400 + g 73 -2.4 -5.27779 | TGAGCGTGATTTTAC CCACCCTC AAGGCTCTATAAA GGGGGTGG TTTTTTAATATTCCA TERM 1306 1455332 - 1455347 + r 70 -6.2 -4.21408 | opp_overlap 1455332 TTTAAAATTCAAAAA GAAATC CTAA GATTTC TTTCATTTTAGAATT TERM 1307 1455347 - 1455332 - R 80 -6.2 -4.87318 | opp_overlap 1455332 TTTAAAATTCAAAAA GAAATC CTAA GATTTC TTTCATTTTAGAATT HPAG1_1400 1457946 - 1455355 - | iron-regulated outer membrane protein TERM 1308 1455405 - 1455415 + g 73 -8.2 -3.82202 | opp_overlap 1455395 ATCCAGGAGCAGGGA GCGC CAT GCGC TTATCTTTAGGGATC HPAG1_1401 1458425 - 1458099 - | hypothetical protein HPAG1_1402 1458762 - 1458409 - | dihydroneopterin aldolase HPAG1_1403 1459547 - 1458759 - | putative glycerol-3-phosphate acyltransferase PlsY TERM 1309 1458939 - 1458915 - GH 86 -5.7 -5.3236 | ATAAGGCACAAAAAA GATAAGAACAG TCG CTGTGCCTACC CCTAGAATGCTAGCG TERM 1310 1459011 - 1458990 - GH 76 -3.6 -5.28176 | CTTACCCACAAAAAA CCACACCG TTAAAC CGATGAGG CTTTCAATAGGGATG TERM 1311 1460052 - 1460027 - gR 82 -7.6 -4.62783 | opp_overlap 1460027 1460027 TATGTATCTTAAAAA CCCTAGCGAT CACCCT ATCGCTATGG GTTTTTGGCTTTTTA TERM 1312 1460027 - 1460053 + Gr 86 -7.4 -4.92239 | gap 1, opp_overlap 1460027, overlap 1460027 TATGTATCTTAAAAA CCC-TAGCGAT CACCCT ATCGCTATGGG TTTTTGGCTTTTTAG TERM 1313 1460027 - 1460052 + Gr 71 -7.6 -3.53717 | opp_overlap 1460027, overlap 1460027 TATGTATCTTAAAAA CCCTAGCGAT CACCCT ATCGCTATGG GTTTTTGGCTTTTTA HPAG1_1404 1459527 - 1460903 + | ferrodoxin-like protein HPAG1_1405 1462112 - 1460913 - | hypothetical protein TERM 1314 1462473 - 1462489 + G 80 -2.2 -5.53991 | opp_overlap 1462473, overlap 1462475 ATCTTTACAAAAAGG CGGCAA AATGC TTGCGG TTTTTTTGCTGGCTG HPAG1_1406 1462198 - 1463424 + | sodium/glutamate symport carrier protein/glutamate permease TERM 1315 1463590 - 1463562 - g 83 -5.3 -5.33866 | GAAACCCACAAAAAA GCCAAAACCCC ACATGCA GAAGTCTTGGC CGCCCAATCAGCACT TERM 1316 1464046 - 1464066 + G 77 -8.3 -3.85698 | opp_overlap 1464038 1464049, overlap 1464049 CGCACAACCAGCGAG CAATATGCG ACA CGCTTATTG TTTCTGGGAAAACCA TERM 1317 1464395 - 1464382 - g 82 -8.1 -4.56597 | CGCTCGCTTTAAAAA CCCCT TTTA AGGGG CGGTTGTTGCATGTG HPAG1_1407 1463421 - 1464455 + | riboflavin biosynthesis protein HPAG1_1408 1464437 - 1465153 + | hypothetical protein TERM 1318 1465537 - 1465514 - g 76 -4.6 -5.01732 | gap 1, opp_overlap 1465535 AAGGGGGTTAAAAAA GTGAGCG-TGA ATT TCACCACCCAC CATTTACAAATCGTG TERM 1319 1465668 - 1465658 - g 81 -6.8 -4.7416 | opp_overlap 1465657 1465658, overlap 1465649 CTAAAAGCCCAAAAA GAGC AGC GCTC CTATTTGCTCACTTT TERM 1320 1467312 - 1467294 - g 79 -5.3 -5.0133 | TAGGGTTTGAAAAAA GCGCTTT GAGTA AAAGCAC ATGCGATATTTTGCT TERM 1321 1467372 - 1467359 - g 93 -6.7 -5.40474 | AGTTTGCTAAAAAAA GCGTT TGAT AACGC TCAAAAAGTCTATCA HPAG1_1409 1465178 - 1467544 + | putative cation transporting P-type ATPase HPAG1_1410 1467978 - 1467541 - | hypothetical protein HPAG1_1411 1468158 - 1469324 + | outer membrane protein HopK HPAG1_1412 1470982 - 1469402 - | restriction endonuclease HPAG1_1413 1471888 - 1470989 - | type II adenine specific DNA methyltransferase TERM 1322 1471318 - 1471340 + g 78 -7.1 -4.39166 | opp_overlap 1471312 1471318 GGAAATCAATATAAT CGCCATTAT AAAAA ATAATGGTG TTTTGCTGTATAAAA HPAG1_1414 1472886 - 1471885 - | type II methylase HPAG1_1415 1474010 - 1472943 - | hypothetical protein TERM 1323 1473172 - 1473154 - G 77 -6 -4.57837 | overlap 1473167 AGACTGGGTGAAAAA TAAGCGAT TAA AACGCTTA AAAACGGCACAAAAA TERM 1324 1473678 - 1473661 - G 73 -5.5 -4.64844 | TCCATATACACAAAA GGAGTCG CGTT CAACCCC ACATAAACAGCCGTG HPAG1_1416 1474625 - 1474065 - | peptidyl-tRNA hydrolase HPAG1_1417 1475171 - 1474635 - | 50S ribosomal protein L25/general stress protein Ctc TERM 1325 1475221 - 1475192 - R 73 -4.4 -5.07652 | overlap 1475187 TCCTTTAAAATAAAA TAAGGGCTTATT CTATCC AAAAAACCCTTA AAAATCAAAAACTGC HPAG1_1418 1476176 - 1475226 - | transaldolase murE 1477523 - 1476180 - | UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase TERM 1326 1477167 - 1477182 + g 76 -4.6 -5.00851 | AAGCTCTAAAAGAGT GGGCGT GGTC AAGCCC TTTTCTTTGATTCGT HPAG1_1420 1478138 - 1477527 - | hypothetical protein TERM 1327 1478055 - 1478045 - G 73 -2.4 -5.28826 | overlap 1478047 AAACTTCAGAAAAAA GGCG TAA CGCT TCAGCGTAATGGGCT HPAG1_1421 1478419 - 1478150 - | NifU-like protein HPAG1_1422 1478558 - 1480159 + | phosphate permease TERM 1328 1481583 - 1481572 - g 70 -5.8 -4.46212 | GGGGCTAGGATAAAA CGCT TAAA AGCG AGTAAAGAAAATAAG HPAG1_1423 1480267 - 1481604 + | hemolysin domain-containing protein TERM 1329 1481877 - 1481897 + G 79 -4.8 -5.04597 | gap 1, overlap 1481874 TAAACTTTCTTTTTT GC-CTCAAA TTGA TTTGAGCGC TTTTTATGTGTACCT HPAG1_1424 1481620 - 1483152 + | lipase-like protein TERM 1330 1483846 - 1483856 + G 73 -8.2 -3.88731 | GCGGTGGTGAGCTTA GCCC TAA GGGC TTTCCTGTGGTGTTG HPAG1_1425 1483164 - 1484153 + | hypothetical protein HPAG1_1426 1484165 - 1485262 + | hypothetical protein TERM 1331 1485801 - 1485816 + G 81 -6.8 -4.77698 | opp_overlap 1485801 GGGGTATTTGAATTA CGCGCT CTCT AGCGTG TTTATTTTCATCTTA HPAG1_1427 1485259 - 1486389 + | hypothetical protein HPAG1_1428 1486376 - 1486948 + | hypothetical protein HPAG1_1429 1486959 - 1487405 + | hypothetical protein TERM 1332 1487484 - 1487466 - g 95 -6.1 -5.5604 | TCAAGCAAGAAAAAA TCATCAA CATGT TTGATGA TATAGCCAGCTCTTA TERM 1333 1487670 - 1487655 - g 70 -3.2 -5.00616 | TTGCTTGGCAAAAAA GCGC TCTAAATT GCGC TGTAGAATTTAAGGA ubiE 1487432 - 1488163 + | ubiquinone/menaquinone biosynthesis methyltransferase HPAG1_1431 1488173 - 1488433 + | hypothetical protein TERM 1334 1488740 - 1488723 - g 89 -5.5 -5.42259 | TCATTTCTAAAAAAA GCGTGAA GTAT TACACGC AACAACGCTTAATCC TERM 1335 1488935 - 1488968 + G 74 -6 -4.37886 | overlap 1488964 GTGCTTTTAAGCAGT GTGGCCACCTTTGA ATCCAA TGAAAGGTGGCGGC TTTTGTGCCAGATGC HPAG1_1432 1488437 - 1489234 + | hypothetical protein HPAG1_1433 1489235 - 1490482 + | seryl-tRNA synthetase TERM 1336 1490568 - 1490556 - g 72 -3.3 -5.02421 | overlap 1490557 1490558 AAAACGAAAAAGAAA CCCCC CTA AAGGG CATTCATTCTAAAAT TERM 1337 1491925 - 1491904 - g 74 -4.5 -4.8667 | gap 1, overlap 1491905 1491906 GATAGCGGATAAAAA CGCGCTTCAA GGG TTGAAA-GCG TTAGAAAACAAGCGC TERM 1338 1491937 - 1491953 + G 73 -2.2 -5.25976 | opp_overlap 1491937 1491939, overlap 1491939 1491941 AGCGTTAGAAAACAA GCGCTT AAAAA AAGCCC TTTCTTTTTTTGATT HPAG1_1434 1490492 - 1493026 + | hypothetical protein HPAG1_1435 1493023 - 1495071 + | DNA helicase II TERM 1339 1495400 - 1495389 - g 76 -4.4 -5.15634 | GAGGCGATTAAAAAA GATG AAAA CATC ACCGCTAACAACACC TERM 1340 1495442 - 1495412 - g 73 -8.5 -3.63991 | gap 1, opp_overlap 1495412 1495414 1495426 1495438, overlap 1495415 CATCACCGCTAACAA CAC-CCAAAAAGAA CGCA TTCCTTTTGGCGTG CTTTCTAACCCCTTA flgA 1495068 - 1495724 + | flagellar basal body P-ring biosynthesis protein FlgA HPAG1_1437 1495734 - 1496297 + | 3-octaprenyl-4-hydroxybenzoate carboxy-lyase coaD 1496297 - 1496770 + | phosphopantetheine adenylyltransferase TERM 1341 1497269 - 1497258 - g 80 -4.4 -5.18726 | opp_overlap 1497258 GCGTTACAAGAAAAA TTCG GGTG CGAA GTTTTGGAATTAGAC tdk 1496772 - 1497347 + | thymidylate kinase TERM 1342 1497873 - 1497857 - g 70 -8.1 -3.71687 | overlap 1497848 1497872 CTAAAACACCTTAAA GCTTTAA ACA TTAAAGC GCACTTTGCGATCGC HPAG1_1440 1497335 - 1497910 + | hypothetical protein TERM 1343 1498587 - 1498600 + G 70 -9.5 -2.64616 | opp_overlap 1498586 1498584 1498583 1498581 TAACCACAACATCAC CGCGC CTCA GCGCG TGCTATACGTGAGCG TERM 1344 1498786 - 1498771 - g 70 -2.6 -5.10461 | gap 1 TTGAGCGAAGAAAAA CGAG-AT CTA ATGCTCG CCAGTTTCAAAGAAA HPAG1_1441 1497943 - 1499154 + | restriction enzyme BcgI alpha chain-like protein TERM 1345 1499240 - 1499220 - g 79 -5.4 -4.95854 | TAAAAAACGCAAAAA CCACGC AGCTTTTAG GCGTGG AGCTTAACGCTGAAA HPAG1_1442 1499138 - 1499542 + | restriction enzyme BcgI alpha chain-like protein HPAG1_1443 1499554 - 1499982 + | restriction enzyme BcgI alpha chain-like protein HPAG1_1444 1499979 - 1501190 + | type II restriction enzyme TERM 1346 1501430 - 1501415 - g 72 -3.4 -5.03314 | GGCATGGTTAAAAAA TTTTAT AAAG ATAAAA AAAACATGCCTTTTA TERM 1347 1501699 - 1501715 + G 80 -6.5 -4.72272 | overlap 1501701 TTTTAACCAGCTTTT GAGCGAT AAA ATCGCGC TTTTTGATGGCAAAA TERM 1348 1501962 - 1501944 - g 83 -9 -4.11692 | overlap 1501952 TACTCAGCCCTAAAA TGTATCAA GCC TTGATACA AGACAAAGGAAGCGC TERM 1349 1502417 - 1502433 + G 82 -3.7 -5.46629 | overlap 1502419 TCGCCCTTTTCTTTA GAGTTTT TGC AAAACGC TTTTTTTAAAATGTT HPAG1_1445 1501256 - 1503955 + | DNA polymerase I TERM 1350 1503944 - 1503955 + F 71 -3 -5.29385 | opp_overlap 1503944 AATCGTTGGAATGAA CTAA AAGG TTAG TTTTTTAATTGAGTT HPAG1_1446 1504070 - 1504816 + | outer membrane protein HorJ TERM 1351 1505214 - 1505239 + G 70 -5.4 -4.32857 | opp_overlap 1505199 1505212, overlap 1505199 1505232 1505232 GCGAATCAAAAATGG CTCGCTCC TTATAAAAGC GGGGCGAG TTTGTATTTGCGCCC HPAG1_1447 1504869 - 1505891 + | branched-chain amino acid aminotransferase HPAG1_1448 1506591 - 1505896 - | outer membrane protein HPAG1_1449 1506725 - 1507858 + | hypothetical protein HPAG1_1450 1507858 - 1508643 + | ABC transporter ATP-binding protein HPAG1_1451 1508628 - 1509443 + | ABC transport system substrate binding protein TERM 1352 1509823 - 1509833 + G 75 -5.4 -4.70046 | overlap 1509831 GCCAACTTATGCGGT TCGT TTT ACGA TTTTATCGTTTTCTC TERM 1353 1509831 - 1509841 + G 79 -5.4 -4.89567 | overlap 1509823 ATGCGGTTCGTTTTA CGAT TTT ATCG TTTTCTCTTTTAGAA HPAG1_1452 1509446 - 1510123 + | hypothetical protein HPAG1_1453 1510135 - 1510722 + | putative secreted motility protein TERM 1354 1510774 - 1510764 - T 77 -4 -5.46698 | opp_overlap 1510728 TCTAAAATCAAAAAA CATT CTA AATG ATAAAGAGATTAAAA HPAG1_1454 1512069 - 1511017 - | cytochrome c551 peroxidase TERM 1355 1515076 - 1515088 + G 79 -6.9 -4.57569 | opp_overlap 1515076 AATGAAATGATGCAA GGGGG TAA CTCCC TTTTTGGGGCAATGG dnaE 1512217 - 1515852 + | DNA polymerase III subunit alpha HPAG1_1456 1515834 - 1516622 + | hypothetical protein HPAG1_1457 1516678 - 1516992 + | thioredoxin TERM 1356 1516998 - 1516982 - f 100 -10.9 -4.28018 | opp_overlap 1516972 AAGACGCGATTAAAA CGCTCTT ATA AAGAGCG TTAAAGAGTCTTGTT HPAG1_1458 1517355 - 1517987 + | hypothetical protein HPAG1_1459 1518011 - 1518538 + | membrane-associated lipoprotein HPAG1_1460 1518546 - 1518887 + | hypothetical protein TERM 1357 1519017 - 1518991 - g 77 -5.1 -4.92812 | opp_overlap 1518991, overlap 1518993 CTACAACAAAACAAA CACCCAAAAAG GCTAT CTTTATGGGAG TGGTTCAGCCACTTC TERM 1358 1519544 - 1519531 - g 86 -8.1 -4.84527 | opp_overlap 1519531 1519530 CGCAGAGATTAAAAA CGCTC TCAT GAGCG CTTATGCCAGAGTGC TERM 1359 1519610 - 1519600 - g 74 -4 -5.01811 | CTATCAAATCAAAAA TGAA GTT TTCA CAGACAGCGCTAATG HPAG1_1461 1518896 - 1519807 + | hypothetical protein HPAG1_1462 1521295 - 1520168 - | type I R-M system specificity subunit TERM 1360 1520439 - 1520427 - G 72 -3.5 -5.04987 | opp_overlap 1520427 AACATTGTTAAAAAA TATTT TAT AAATA TAATATGTTCGCTAA TERM 1361 1520967 - 1520951 - G 71 -5.3 -4.6265 | AGAATAAGCATAAAA TAAAAAA TCA TTTTTTA CTAATGTTTCATCGT TERM 1362 1521157 - 1521140 - G 70 -5.5 -4.41348 | CTTTTTTGAAATAAA GGCATCA GCGG TGTTGCC AAATGTGCCTATTTT HPAG1_1463 1522059 - 1521283 - | hypothetical protein TERM 1363 1521517 - 1521541 + g 72 -10.2 -2.63102 | opp_overlap 1521522, overlap 1521522 AGTGCCATAGGTTGG CAAAACATAC TCGTT GTATGTTTTG TAATCTGCAAATAAT HPAG1_1464 1524158 - 1522146 - | type I restriction enzyme M protein TERM 1364 1522458 - 1522477 + g 84 -2.2 -5.84432 | overlap 1522460 TTTAGCCTCTAGTAA TTCTAAAG CGGT TTTTAGGA TTTTTTTATCTTCTG TERM 1365 1523451 - 1523438 - G 77 -5.2 -4.9218 | CATCTATCACAAAAA CGCC CTTTCT GGCG CGCGCATTTTTTTTG TERM 1366 1524103 - 1524092 - G 75 -5.8 -4.81863 | AAAGGGATAATAAAA GCGA AACT TCGC TAGGGGTGTAAAACT HPAG1_1465 1524604 - 1524194 - | type I restriction enzyme M protein TERM 1367 1527577 - 1527559 - g 100 -3.2 -6.20267 | overlap 1527560 TCAAAAAGAAAAAAA CCTTAAAA TCG CTTTAAGA AAAATCATAAACGAT HPAG1_1466 1524671 - 1527649 + | type I restriction enzyme R protein TERM 1368 1527801 - 1527777 - gf 77 -8.5 -3.57144 | opp_overlap 1527781, overlap 1527780 CCCCCTAGCTTTAAA CGATGAGAGCC TTA GGCTCTCTTTG ATTAAAAGACTCCCT TERM 1369 1527798 - 1527780 - gf 71 -8.8 -2.91695 | opp_overlap 1527781, overlap 1527777 CCTAGCTTTAAACGA TGAGAGCC TTA GGCTCTCT TTGATTAAAAGACTC TERM 1370 1527781 - 1527797 + GF 100 -12.3 -3.90291 | opp_overlap 1527780 1527777 CTAGCTTTAAACGAT GAGAGCC TTA GGCTCTC TTTGATTAAAAGACT HPAG1_1467 1527649 - 1527879 + | hypothetical protein HPAG1_1468 1527816 - 1528355 + | hypothetical protein HPAG1_1469 1530982 - 1528454 - | iron(III) dicitrate transport protein HPAG1_1470 1532298 - 1531330 - | arginase TERM 1371 1531897 - 1531882 - G 70 -9 -3.13109 | opp_overlap 1531893, overlap 1531881 GACACGATTTAAAAC CATGCC TAAG GGCATG CCGTGGATATGCTTT HPAG1_1471 1533738 - 1532311 - | amino acid permease TERM 1372 1533303 - 1533289 - G 80 -6.4 -4.72272 | GGTGCTGAGCAAAAA TTCGCC TGT GGCAAA AATCTTAACCGAAAA HPAG1_1472 1533938 - 1535080 + | alanine dehydrogenase TERM 1373 1535691 - 1535676 - g 77 -4.8 -4.95167 | CAAGCAAGAATAAAA TAATTG AGAA CAATTA CCTAAAAAATGCGAT HPAG1_1473 1535201 - 1536754 + | hypothetical protein HPAG1_1474 1536738 - 1536926 + | hypothetical protein HPAG1_1475 1537665 - 1536937 - | outer membrane protein HorL TERM 1374 1537493 - 1537471 - G 76 -3.4 -5.27335 | overlap 1537472 TTTCCCAAAGAAAAA CTGATACCCT AAA AGCGCATCAA ACCCCTTGATAGTAG TERM 1375 1537613 - 1537587 - G 84 -8.1 -4.82901 | gap 1, overlap 1537572 CCGCCCCTATAAAAA CGCCATT-GCCA TCCA TGGCTAATAGCG CGTTCATAGAAGCAA TERM 1376 1537786 - 1537762 - H 77 -2.9 -5.54338 | overlap 1537764 1537785 TAATCAAAATAAAAA CTTCTTATG AATTCCA CATAAGATG ATAAAAAAGCGGCTA HPAG1_1476 1537852 - 1538706 + | hypothetical protein TERM 1377 1539408 - 1539388 - g 82 -6.1 -4.90266 | overlap 1539390 TCTAGTAAGGAAAAA CTGAACGAT AAA ATCGCTCTG GCGTTAGAGGTGCTA HPAG1_1477 1538719 - 1540293 + | DNA repair protein TERM 1378 1541132 - 1541115 - g 72 -3.5 -5.06961 | AGCAAGAAAAAGAAA CAAAAAT CGCA ATTCTTG TATTTAGAAGAAGAG HPAG1_1478 1540290 - 1541597 + | fibronectin/fibrinogen-binding protein HPAG1_1479 1541617 - 1541913 + | hypothetical protein TERM 1379 1541908 - 1541937 + F 80 -5.7 -5.03314 | TTGTTGGATATTGTG GGGTAGGGTGT CGCGAATA ACCCCCTATCC TTTTTTAAAAGTAAG HPAG1_1480 1542044 - 1542400 + | hypothetical protein HPAG1_1481 1543617 - 1542646 - | DNA polymerase III subunit epsilon TERM 1380 1542844 - 1542832 - GT 73 -7.7 -3.65313 | overlap 1542834 TAAGCATATTTCAAA GAGCT TAT AGCTC GCTAAAGCGTCCGCA TERM 1381 1543309 - 1543296 - GT 79 -3.1 -5.46129 | CAATAAAGGAAAAAA CCTCA TCTT TAAGG GGGGTTTTAAGGTTT HPAG1_1482 1544140 - 1543487 - | ribulose-phosphate 3-epimerase TERM 1382 1543853 - 1543867 + gH 91 -7.8 -5.1417 | TTTAATGAGTTGCAA CACCCT ATG GGGGTG TTTTTCATTTTCTGC HPAG1_1483 1544211 - 1545083 + | fructose-1,6-bisphosphatase TERM 1383 1545116 - 1545134 + G 73 -6.7 -4.19238 | opp_overlap 1545116 AAATTAGAATATGAA GAGCGTT TTAAT GACGCTC TTTTGAAATTACAAG HPAG1_1484 1545080 - 1545286 + | hypothetical protein HPAG1_1485 1545299 - 1546195 + | putative type II methylase protein HPAG1_1486 1546188 - 1546919 + | hypothetical protein TERM 1384 1546946 - 1546960 + T 88 -7.2 -4.94262 | CCCATTTATCTATTT CTTGTA AAA TACAAG TTTATTTTTAATATA HPAG1_1487 1547897 - 1547040 - | ubiquinol cytochrome c oxidoreductase, cytochrome c1 HPAG1_1488 1549132 - 1547894 - | ubiquinol cytochrome c oxidoreductase, cytochrome b subunit HPAG1_1489 1549646 - 1549143 - | ubiquinol cytochrome c oxidoreductase, Rieske 2Fe-2S subunit TERM 1385 1549298 - 1549310 + g 76 -3.3 -5.19251 | GCCCCCCATGGCATG GGCAT AAA AAGCC TTTTTCTTCATCTTG HPAG1_1490 1552769 - 1549770 - | transcription-repair coupling factor TERM 1386 1552309 - 1552291 - G 87 -5.2 -5.40072 | TCGGTGTCAAAAAAA CTCAAGCG ATA CGCCTTAG AATTAGGTGCATAAA HPAG1_1491 1553183 - 1552773 - | hypothetical protein HPAG1_1492 1554037 - 1553102 - | toxR-activated gene TERM 1387 1553296 - 1553273 - GR 81 -6.8 -4.66163 | gap 1 AGGCTGATTTAAAAA CCGCACTT-CA TAA TGCAAATGCGG CCCTGTGCTCATTCC HPAG1_1493 1554972 - 1554046 - | toxR-activated gene HPAG1_1494 1556141 - 1554972 - | folylpolyglutamate synthase TERM 1388 1555397 - 1555409 + g 75 -7.7 -4.08692 | opp_overlap 1555397, overlap 1555379 TATTGCATGGCATAA GCGTT TCA AACGC TTTTAGAGCCACTTC TERM 1389 1555840 - 1555855 + g 76 -7.6 -4.15044 | TGCAATTGCTGGTGG GCGTTT TCTA AAACGC TTTCTTCAACAACAG HPAG1_1495 1556643 - 1556131 - | hypothetical protein leuS 1559060 - 1556640 - | leucyl-tRNA synthetase HPAG1_1497 1559409 - 1559071 - | hypothetical protein TERM 1390 1559142 - 1559126 - G 70 -8 -3.73816 | opp_overlap 1559094, overlap 1559094 AAGATGAGACTGAAA GCGTTG CTAAT CAACGC CCCGATCATGAGCAT secF 1560390 - 1559419 - | preprotein translocase subunit SecF TERM 1391 1559785 - 1559769 - G 81 -6.7 -4.7373 | opp_overlap 1559754 TGATTCGATCAAAAA TAATGAT CGT ATCATTA ATGGAATACCCAATC secD 1561976 - 1560399 - | preprotein translocase subunit SecD yajC 1562270 - 1561977 - | preprotein translocase subunit YajC HPAG1_1501 1563634 - 1562318 - | Na+/H+ antiporter TERM 1392 1563478 - 1563453 - G 87 -3.3 -5.83226 | gap 1, overlap 1563454 AAGCCAATAAAAAAA TCCCCTATTTGA AAC CCAAA-AGGGGT GTGCCATAGTGCAAA TERM 1393 1563477 - 1563454 - G 71 -6.8 -4.07495 | gap 1, overlap 1563453 AGCCAATAAAAAAAT CCCCTATTTGA AAC CCAAA-AGGGG TGTGCCATAGTGCAA HPAG1_1502 1566519 - 1563658 - | ATP-dependent nuclease TERM 1394 1563891 - 1563881 - G 80 -2.4 -5.63517 | opp_overlap 1563881 1563886 CCTTCAAATAAAAAA GCCG CTT CGCC CTTTAAGGGCAAATT TERM 1395 1563886 - 1563904 + g 81 -7.4 -4.56775 | opp_overlap 1563881, overlap 1563881 AAATAAAAAAGCCGC TTCGCCCT TTA AGGGCAAA TTTTTAAAAAGAGCT TERM 1396 1564634 - 1564644 + g 71 -4 -4.84359 | AAAGAAGCGATCGAT TTAG CCT CTAA TTTTTCTAAAAATCC TERM 1397 1565701 - 1565727 + g 85 -6.6 -5.03145 | overlap 1565700 CTCTTCGCATTCGCT CTCTAAAGTGGG GAT TTCACTTTTGAG TTTTTTGAAAGATTG TERM 1398 1565738 - 1565752 + g 78 -2.8 -5.40072 | opp_overlap 1565738 TTGAGTTTTTTGAAA GATTGA TAT TCACTC TTTTTTTCAAGCCAA TERM 1399 1567291 - 1567274 - g 83 -3.5 -5.63517 | gap 1 TGGCTAAAGAAAAAA TTGCTGTC GCT GA-AGCAA GAAAACTCCATATCC rpsB 1566769 - 1567563 + | 30S ribosomal protein S2 TERM 1400 1567608 - 1567596 - g 79 -4.9 -5.12617 | CAATTAGTCAAAAAA TTAAG GGA CTTAA CCGATGCGGGCATGA TERM 1401 1567654 - 1567638 - g 70 -3 -5.05782 | gap 1 ATGGATTGCAAAAAA GCC-CTT GTAG AAGTGGC TGGGGATTTGCAAAA TERM 1402 1567709 - 1567695 - g 73 -5.7 -4.56597 | TTCTTGCGCGAAAAA GGCTT GAGTA AAGCC GCTAAAAAGGCCGAT tsf 1567563 - 1568630 + | elongation factor Ts TERM 1403 1568658 - 1568643 - T 73 -7.6 -3.75665 | opp_overlap 1568643 TGAGATTTTAGCAAA CAACCT TTAA AGGTTG TTTCTTCTAACCTTT TERM 1404 1568643 - 1568658 + T 80 -7.6 -4.33851 | opp_overlap 1568643 TGAGATTTTAGCAAA CAACCT TTAA AGGTTG TTTCTTCTAACCTTT HPAG1_1505 1570921 - 1569074 - | cell division protein TERM 1405 1570801 - 1570788 - G 87 -5.3 -5.40072 | overlap 1570790 GCTTGGGCAAAAAAA GCTTT TTTA AAAGC CACCATTAAAAAAAC fliE 1571406 - 1571077 - | flagellar hook-basal body protein FliE TERM 1406 1571133 - 1571153 + g 72 -8.3 -3.61268 | overlap 1571136 CTTTGTTACGCACTT CAAGCATGA GTT TCATGCTCG TTTCAGCCTTCCCTA flgC 1572019 - 1571534 - | flagellar basal body rod protein FlgC flgB 1572455 - 1572033 - | flagellar basal body rod protein FlgB TERM 1407 1573160 - 1573176 + G 76 -7.3 -4.17048 | opp_overlap 1573160 GGGGGTTTTGCAAAA CGATTTG GGG CAGATCG TTCTTTTGGGGGCGG TERM 1408 1573760 - 1573774 + G 72 -8.6 -3.49475 | GAGCTATGGAGGGAG TTCGCT TCT AGCGAA TTGTATCGCCATAGG HPAG1_1509 1572660 - 1573826 + | cell division protein HPAG1_1510 1574858 - 1573851 - | iron(III) ABC transporter, periplasmic iron-binding protein TERM 1409 1574845 - 1574833 - G 71 -6.3 -4.26832 | GAATAAGAAATGAAA GCTTT TTT AAAGC GAGTAACTAACATAA HPAG1_1511 1576052 - 1575057 - | iron(III) ABC transporter, periplasmic iron-binding protein TERM 1410 1575542 - 1575557 + g 70 -2.5 -5.0133 | TAAAATCCAAAGTTT CTTGC ATTTTG GCGAG TTTTTTAGAAGCGTC TERM 1411 1576394 - 1576408 + G 74 -4.2 -5.07652 | CTAAAAATTTAGGTA GAAGCG GTG CGATTC TTTTCTTTTGGCCAA TERM 1412 1576412 - 1576427 + G 74 -4.8 -4.75518 | GCGGTGCGATTCTTT TCTTTT GGCC AAAAGA TTTTACTTTTGTATG HPAG1_1512 1576297 - 1576893 + | alkyl hydroperoxide reductase TERM 1413 1576880 - 1576896 + F 79 -8.1 -3.9642 | opp_overlap 1576879 1576880 ATCTTAAAGAAAATT CCATTAA CCT TTAATGG TTTGATTCGCTGTTT TERM 1414 1576909 - 1576943 + F 76 -8.8 -3.4503 | opp_overlap 1576918, overlap 1576908 TGGTTTGATTCGCTG TTTGATCAAGAGAAAC TTC GTTTTTCTTGGTTGAA TCCTTTTCTTTTTAT TERM 1415 1577443 - 1577433 - g 75 -5.4 -4.81551 | opp_overlap 1577433 CACGGATATTAAAAA CCTT AAA AAGG GTTCAGTGATTGCTG HPAG1_1513 1577041 - 1577856 + | putative outer membrane lipoprotein TERM 1416 1578113 - 1578130 + T 71 -8.5 -2.80779 | overlap 1578110 1578115 TTGGGATGAATGCTT TAGTTCC GCTA GGAACTA TACTTAAATTATACT TERM 1417 1578242 - 1578264 + T 74 -8.5 -3.26675 | overlap 1578241 1578243 TGATAATATTTTCAC TGACACCTT TAAAC AAGGTGTCG CTTTTCATTCAATTC TERM 1418 1578243 - 1578263 + T 74 -9.8 -2.55282 | overlap 1578242 1578241 GATAATATTTTCACT GACACCTT TAAAC AAGGTGTC GCTTTTCATTCAATT TERM 1419 1578300 - 1578285 - T 73 -7.6 -3.61268 | opp_overlap 1578281 CATTCAATTCGCAAA CAACGA TTGT TCGTTG TATCGCACTTGCGAA TERM 1420 1578354 - 1578368 + T 74 -8.6 -3.21551 | ATAAGTGCCATTAGG GTTGTG TTT CACAAC TTGATCAATCATTTT HPAG1_1514 1580330 - 1578564 - | penicillin-binding protein 2 TERM 1421 1579034 - 1579024 - G 74 -4.6 -5.00616 | GGCGTGGCTAAAAAA GAGC CTT GCCC AATAGCGGTAATGAG TERM 1422 1579861 - 1579881 + g 74 -9.1 -3.48276 | opp_overlap 1579861 ACATGCGAAGCTAAA GCGTTATTA GGG TAGTAACGC TTGTCTAAGGGAAGC HPAG1_1515 1580754 - 1580311 - | hypothetical protein TERM 1423 1580656 - 1580644 - G 79 -3.3 -5.40014 | AAACAAGAATAAAAA CCCAA TCA TAGGG GGTAAAAAAGGCATT HPAG1_1516 1581393 - 1580767 - | GTPase EngB HPAG1_1517 1581947 - 1581390 - | hypothetical protein HPAG1_1518 1582540 - 1581947 - | hypothetical protein TERM 1424 1582318 - 1582307 - GR 81 -4.4 -5.32944 | TTTAGAATCAAAAAA GATC TCAT GATC ATCGTATTGTAAAGC HPAG1_1519 1583009 - 1582515 - | hypothetical protein HPAG1_1520 1583950 - 1583006 - | rare lipoprotein A TERM 1425 1583343 - 1583359 + g 72 -3.6 -5.04385 | opp_overlap 1583343 1583344, overlap 1583344 CCCAAAACAATAAGA CGCACG CTGGC CGTGCC TTTTTTAACCATGTC HPAG1_1521 1585062 - 1583950 - | regulatory protein DniR HPAG1_1522 1585915 - 1585151 - | hypothetical protein TERM 1426 1586330 - 1586347 + G 79 -5.5 -4.90002 | TGGATTTTTTCATCA GCGCTTC TGAA GAAACGC TTTTATTGTGTGTTG TERM 1427 1586560 - 1586549 - g 78 -3 -5.42259 | CTATTTTGAAAAAAA CAAA AGGG TTTG AAAAAAATTTCTCTT HPAG1_1523 1585990 - 1586610 + | riboflavin synthase subunit alpha TERM 1428 1586670 - 1586651 - g 70 -9.3 -3.23393 | overlap 1586649 CTCTAGCCTATAACA TGGGGCA AGATCA TGCCCCA AAAGTGATCGCAAGC HPAG1_1524 1586611 - 1586883 + | FlhB-related flagellar biosynthesis protein HPAG1_1525 1586905 - 1587888 + | ABC transporter, ATP-binding protein TERM 1429 1588031 - 1588010 - g 76 -4.5 -5.1675 | gap 1, opp_overlap 1588011, overlap 1588011 TTAGTGAGTAAAAAA GGGCATTTGT TAA ACAAAC-CCC TTTTGCATAAGATTT HPAG1_1526 1587890 - 1588537 + | ABC transporter, permease protein HPAG1_1527 1589155 - 1588724 - | hypothetical protein HPAG1_1528 1589827 - 1589165 - | hypothetical protein TERM 1430 1589732 - 1589753 + gr 74 -4.5 -4.8622 | overlap 1589734 1589749 1589750 GACCCATAAGAGCAG GATCAAAAA AAGA TTTTTGAGC TTTTTCATTAAAACG HPAG1_1529 1590768 - 1589761 - | undecaprenyl phosphate N-acetylglucosaminyltransferase TERM 1431 1590585 - 1590562 - GH 100 -3.2 -6.12458 | overlap 1590563 CAAAAAAACAAAAAA CCCCTTAAAA GGCA TTTCAAAAGG TTCAAAATAACAAGC TERM 1432 1590630 - 1590644 + gH 70 -7.1 -3.69395 | GAAAGATCCCAAGCC CCCCA GCTCG TGGGG TTCTTGCATGATGAA TERM 1433 1591664 - 1591648 - g 71 -3.7 -4.91109 | GTGGGATTAGAAAAA GCGATTT TAG AAATGGC ACAACTTATCAAGCG HPAG1_1530 1590895 - 1591683 + | pyridoxal phosphate biosynthetic protein PdxJ pdxA 1591685 - 1592608 + | 4-hydroxythreonine-4-phosphate dehydrogenase TERM 1434 1592802 - 1592774 - g 71 -5.2 -4.64334 | AATCTCTCAAGAAAA GCACCACAGCTC TTATG GAGGCGTTGTGC CTGAGCTTGCATCGC TERM 1435 1593493 - 1593505 + G 74 -9.1 -3.53343 | overlap 1593504 TTGTGGGAGGAGCGA GCCAG AAT CTGGC TTTAAGAAAGGCGTT HPAG1_1532 1592673 - 1593695 + | O-sialoglycoprotein endopeptidase TERM 1436 1593965 - 1594004 + F 100 -17.6 -3.86916 | gap 1, opp_overlap 1593970, overlap 1593970 CAGAAAAAAGGGGTT TACAAGATCCTTAAGAGTT GGT AACTCTTAAGGATCT-GTA TTTAGTGTAGTGGTG TERM 1437 1594000 - 1593970 - f 100 -18.6 -3.30903 | opp_overlap 1593965 1593970 AAAAGGGGTTTACAA GATCCTTAAGAGTT GGT AACTCTTAAGGATC TGTATTTAGTGTAGT TERM 1438 1593970 - 1594000 + F 100 -18.6 -3.32803 | opp_overlap 1593970, overlap 1593965 AAAAGGGGTTTACAA GATCCTTAAGAGTT GGT AACTCTTAAGGATC TGTATTTAGTGTAGT flgG 1594510 - 1595298 + | flagellar basal body rod protein FlgG HPAG1_1534 1595508 - 1595317 - | hypothetical protein HPAG1_1535 1596290 - 1595565 - | hypothetical protein SEQUENCE gi|108564598|ref|NC_008087.1| Helicobacter pylori HPAG1 plasmid pHPAG1, complete sequence (length 9370) HPAG1_p001 433 - 2064 + | replication initiation protein A HPAG1_p002 2077 - 2784 + | hypothetical protein TERM 1 2788 - 2810 + F 72 -3.4 -5.2696 | TTTTGCGAATGATTT CGCTCAAATT TTC ATTTTAAGCG TTTTTTAGCTTTTAG TERM 2 3212 - 3190 - f 70 -6.2 -4.17002 | overlap 3192 TAGCAAATCAAACAA GATAGCGCAA ACC TGGCGCTAGC CCAAAAAACCACTAA TERM 3 3210 - 3192 - f 70 -7.4 -3.66578 | overlap 3190 GCAAATCAAACAAGA TAGCGCAA ACC TGGCGCTA GCCCAAAAAACCACT TERM 4 3248 - 3266 + F 80 -5.2 -5.12971 | overlap 3250 3251 AAACTCCAAAATATG TAGCGCGT CAT GCGCGTTG TTTTTATTACATGTT TERM 5 3251 - 3263 + F 79 -6.9 -4.64495 | overlap 3250 3248 CTCCAAAATATGTAG CGCGT CAT GCGCG TTGTTTTTATTACAT TERM 6 3286 - 3296 + F 74 -5.4 -4.81752 | TATTACATGTTTTAA CAAC TAT GTTG TTTTTACATGTTTTT TERM 7 4267 - 4243 - g 74 -6.5 -4.33274 | overlap 4244 GGGATAGCATTAAAA CCGCTGATTTT TGG AAAATTAGCGA AACTGAAACTTCAAT HPAG1_p003 3828 - 5345 + | replication initiation protein A HPAG1_p004 7420 - 5438 - | hypothetical protein TERM 8 5510 - 5520 + g 70 -3.2 -4.9725 | TCTAATCTTTCTATC CAGC TGT GTTG TTTTTGTATGAAGCT HPAG1_p005 7754 - 7410 - | MobC-like protein TERM 9 8118 - 8107 - g 85 -3 -5.70829 | AAGATGAGAAAAAAA CTAA AAAT TTAG AGACTTTACAAGCGA HPAG1_p006 7950 - 8228 + | hypothetical protein HPAG1_p007 8215 - 8364 + | hypothetical protein TERM 10 8373 - 8354 - T 79 -10 -2.93783 | opp_overlap 8353 8354, overlap 8343 8351 8366 AAAAGCGTGAAAGCA CCCCTTGC TAAA GCAAGGAG CTTCCTAACTAAAGC HPAG1_p008 8436 - 8332 - | hypothetical protein TERM 11 8402 - 8387 - G 71 -7.6 -3.90291 | AGCTTCCTAACTAAA GCATTC CATT GAATGC TAACACGAAAGGCTT