TransTermHP v2.07 (built on Jan 21 2009) 25 bins; sample size is 20000000 --pval-conf=/fs/szasmg2/carlk/TTupdate2/expterm.dat --gc=-2.3 --au=-0.9 --gu=1.3 --mm=3.5 --gap=6 --max-len=59 --min-stem=4 --max-loop=13 --min-loop=3 --uwin-length=6 --uwin-require=3 --max-hp-score=-2 --max-tail-score=-2.5 --loop-penalty=1,2,3,4,5,6,7,8,9,10,11 --start-cut=0 --end-cut=25 Genes: 0.603776 %AT, 1467632 nt, 8581 terms. Intergenic: 0.668853 %AT, H2T: 184081 nt, 1031 terms; T2T: 52337 nt, 863 terms; H2H: 57835 nt, 735 terms. Each terminator entry starts in column 3 and is of the form: term # start - end +/- regionconf hp tail | notes Followed by the sequence of the 5' tail, 5' stem, loop, 3' stem, and 3' tail. Genes are interspersed, and start the first column. SEQUENCE gi|210134201|ref|NC_011498.1| Helicobacter pylori P12, complete genome (length 1673813) nusB 429 - 13 - | N utilization substance protein B TERM 1 92 - 116 + g 72 -10.1 -2.64695 | overlap 91 GGGGTGTTAGGCTCA GCGTAGAGTTT GCC AAGCTCTATGC ATTCATTGATGATGA HPP12_0002 901 - 431 - | riboflavin synthase beta chain kdsA 1741 - 911 - | 3-deoxy-D-manno-octulosonic acid 8-phosphate synthetase HPP12_0004 2393 - 1728 - | beta-carbonic anhydrase TERM 2 2854 - 2836 - g 81 -5.9 -5.01732 | overlap 2823 AACGCTCTTAAAAAA CGCCCCT TGATT ATGGGCG TGAGCGCTTTAACCA pyrF 2515 - 3198 + | orotidine 5'-phosphate decarboxylase TERM 3 3958 - 3973 + G 71 -6.1 -4.2558 | opp_overlap 3957 TTAAAAACCATAGAG CCAGC TAACAC GCTGG TTTTAGTGGCGGCTC panC 3199 - 4029 + | pantoate-beta-alanine ligase TERM 4 4838 - 4856 + T 82 -3.2 -5.64321 | opp_overlap 4839, overlap 4839 4840 TTTTGTTTAAAAAAT TTCATTTT TAA AAAATGGG TTTTTGTTTTATTGT TERM 5 5049 - 5026 - T 85 -9 -4.13343 | gap 1, opp_overlap 5030 5030, overlap 5030 AGAAAGGCTTTAAAA GAAAC-CCCTT AAA AAGGGAGTTTC ACAAAGGGTTTTAAC TERM 6 5044 - 5030 - T 80 -6.4 -4.65263 | opp_overlap 5030 5030, overlap 5026 AGGCTTTAAAAGAAA CCCCTT AAA AAGGGA GTTTCACAAAGGGTT hopZ 7167 - 5068 - | outer membrane protein HopZ TERM 7 7451 - 7432 - R 77 -5.6 -4.86731 | opp_overlap 7432, overlap 7427 TTTTGTCAAATAAAA GCCCCCCC AAAA AAGAGGGC TGTTATAAAAAATGG TERM 8 7505 - 7476 - R 72 -4.9 -4.75404 | gap 1 AAATGGTATTAAAAA GCAAGGG-GGCTTA CAT CATGCCACCCATGC CTCCCATACCGCCCA groEL 9126 - 7486 - | chaperone and heat shock protein TERM 9 8986 - 9002 + g 70 -3 -5.08824 | gap 1, overlap 8982 GCCGTCTTTGGTGAT GCT-TGG AGCG CCATAGC TTTTTTGGATCAACA groES 9507 - 9151 - | cochaperone TERM 10 9183 - 9198 + g 73 -7.6 -4.0044 | opp_overlap 9175, overlap 9168 9175 9165 CATGACAGCAAGCTT CATGCT CTTT AGCATG TTTATGGTCATGATT TERM 11 9338 - 9326 - G 75 -7.7 -4.09685 | opp_overlap 9326 9325 TTGTATTTGCCAAAA GCGAT CAC ATCGC CTTCTTTAACGCATT TERM 12 10937 - 10949 + G 71 -4.9 -4.5528 | TAAAGAAATGTTAGG GTTTT TAA AAAAC TTTTCCTTGCTTTTA TERM 13 11101 - 11123 + G 71 -4.8 -4.58283 | AAAAGTTCGCCCATG TTCCTAACAC GAT GAGTTTGGAA TTTTTAGAAAAATTA TERM 14 11435 - 11423 - g 81 -5.5 -5.0133 | opp_overlap 11423 GATCTTTTTAAAAAA GGCTC GCC AAGCC ATTATAAAATTAAAA dnaG 9795 - 11474 + | DNA primase DnaG HPP12_0011 11471 - 12523 + | argininosuccinate synthase TERM 15 13276 - 13294 + G 70 -3.1 -5.00616 | opp_overlap 13292 GAGCTACCCCTTATA TGCCCTT TGCGC AAGAGCA TTTTTTGCAAAAAGG TERM 16 13382 - 13371 - g 72 -4.4 -4.80396 | GAAAAGATTCAAAAA CTCT TAGA AGAG GACGCCCTACAAGCC HPP12_0012 12615 - 13442 + | hypothetical protein TERM 17 13508 - 13520 + F 71 -5.5 -4.46432 | overlap 13507 TACGCCCTTTTTGAC CCCTT TTA GAGGG TTTTAATGGTTTTTT comB2 13587 - 13868 + | ComB2 competence protein TERM 18 14028 - 14053 + G 70 -2.5 -5.14965 | TATTGTATTTAGGGT TTTTAGCGCTC TTTA GCGTGCTGGAA TTTTTTGATGAAGAT comB3 13868 - 14131 + | ComB3 competence protein TERM 19 14397 - 14385 - g 70 -3.3 -4.83615 | GATTCTTTAGAAAAA GTCGT GGC ACGCC TGGTGGTTAAAAGGC TERM 20 14763 - 14751 - g 83 -9.1 -4.07885 | opp_overlap 14749 14751 14751 GATCTCCCCCTAAAA CCCCT AGT AGGGG GGTATTTGAGCGATA TERM 21 15903 - 15919 + G 74 -3.7 -5.13473 | AACGCTTTGAATGAC GCGTT CAACTCC AACGC TTTTTTAAATGTAAT comB4 14133 - 16496 + | ComB4 competence protein HPP12_0016 16729 - 18138 + | hypothetical protein cheV-1 18238 - 19203 + | chemotaxis signal transduction protein CheV TERM 22 19631 - 19612 - g 71 -6.5 -4.2679 | opp_overlap 19602 19611 TAAGCCCCATTAAAA TGGGTTT GAGGAT AAACCCA CTCTATAGCGAAGTA nspC 19200 - 20417 + | carboxynorspermidine decarboxylase HPP12_0019 21011 - 20436 - | lipid A 1-phosphatase HPP12_0020 22587 - 21022 - | integral membrane protein TERM 23 22882 - 22906 + r 89 -9.3 -4.13995 | overlap 22883 GATTTCTAAGAGCGT TCCCTAAGCCT AAA AAGCTTAGGGG TTTCCTTTATAAGCG TERM 24 22883 - 22905 + r 80 -10.6 -3.07915 | overlap 22882 ATTTCTAAGAGCGTT CCCTAAGCCT AAA AAGCTTAGGG GTTTCCTTTATAAGC TERM 25 23198 - 23176 - R 71 -3.4 -5.08169 | opp_overlap 23179 23180 23183, overlap 23180 AGAGAGTTCAAAAAA GAAATCCCTT AAA AAGGGAGTTT TAAGCTTTTAGTAAG TERM 26 23194 - 23180 - R 95 -8.6 -5.05153 | opp_overlap 23179 23180 23183, overlap 23176 AGTTCAAAAAAGAAA TCCCTT AAA AAGGGA GTTTTAAGCTTTTAG TERM 27 23180 - 23194 + r 73 -8.6 -3.16106 | opp_overlap 23180 23176, overlap 23179 23183 AGTTCAAAAAAGAAA TCCCTT AAA AAGGGA GTTTTAAGCTTTTAG hopD 25338 - 23206 - | outer membrane protein HopD gltA 27152 - 25872 - | citrate synthase icd 27354 - 28631 + | isocitrate dehydrogenase HPP12_0024 28693 - 29226 + | hypothetical protein bioD 29859 - 29203 - | dethiobiotin synthetase HPP12_0026 31623 - 29863 - | hypothetical protein TERM 28 30828 - 30847 + g 71 -9.4 -2.82516 | opp_overlap 30826 30828 30832, overlap 30832 GCTCGTGTGAGAATA CAAAGAAG CTAA CTTCTTTG TCTGGTAATAGAGCG TERM 29 30847 - 30828 - G 73 -9.4 -3.21276 | opp_overlap 30828 30832, overlap 30826 30832 GCTCGTGTGAGAATA CAAAGAAG CTAA CTTCTTTG TCTGGTAATAGAGCG HPP12_0027 31734 - 32147 + | hypothetical protein clpS 32183 - 32458 + | ATP-dependent clp protease adapter protein ClpS TERM 30 34438 - 34423 - g 73 -5.4 -4.65153 | TTAGACAAATTAAAA GCCCTA GCGC TAGAGC AAGACATAGCCTTAA TERM 31 34544 - 34532 - g 100 -4.9 -5.75822 | GAGAAATTAAAAAAA TCATT CAC AATGA GATCAAAACCCCATT clpA 32458 - 34683 + | ATP-dependent clp protease panD 34673 - 35023 + | aspartate alpha-decarboxylase precursor HPP12_0031 35034 - 35327 + | hypothetical protein HPP12_0032 35327 - 36331 + | hypothetical protein TERM 32 36520 - 36531 + G 73 -7.2 -4.10007 | overlap 36529 AACAGAATTTTTTCA GCGC TAGC GCGC TTTTAGAGGCGTTAT TERM 33 36787 - 36801 + G 91 -6.4 -5.42259 | opp_overlap 36799, overlap 36776 36799 TGTGGCTTTTTTTAA GCGTTT TAC AAGCGC TTTTTTTGAGCGTGC comB6 36339 - 37394 + | ComB6 competence protein comb7 37410 - 37523 + | Comb7 competence protein comB8 37520 - 38263 + | ComB8 competence protein TERM 34 38296 - 38327 + G 71 -3.8 -5.00616 | overlap 38299 GCTCTCATGGGCCTT TTGTTGGCTTTTAG CACT TTAAAGGCCGATGA TTTTTTAGAAGAAGC TERM 35 38449 - 38432 - g 71 -4.9 -4.61527 | opp_overlap 38432, overlap 38423 AAAACCGCTCAAAAA TGTCCAA CACT TTGAACA TTGATTACTTTCAAG comB9 38263 - 39249 + | ComB9 competence protein comB10 39242 - 40378 + | ComB10 competence protein TERM 36 41145 - 41130 - g 79 -9 -3.93367 | TTTTTGAACAAAAGA TCGCTC GTTT GAGCGA AAAGAGCATGCAAGA HPP12_0038 40448 - 41767 + | bifunctional mannose-6-phosphate isomerase / mannose-1-phosphate guanylyltransferase gmd 41888 - 43033 + | GDP-D-mannose dehydratase TERM 37 43342 - 43329 - g 71 -3.8 -5.00616 | TTGGGCGTGAAAAAA GCCA TTAATC TGGC GAGCTCTTGCGCTTA HPP12_0040 43026 - 43958 + | GDP-fucose synthetase TERM 38 44405 - 44419 + T 70 -4.2 -4.78753 | opp_overlap 44398 AAAATTGATAGCTAT CGCCAA ATC TTAGCG TTTTATTAATCTTGA hypE 45874 - 44876 - | hydrogenase expression/formation protein hypF 48150 - 45877 - | transcriptional regulatory protein HypF TERM 39 46235 - 46223 - G 84 -7.7 -4.7416 | opp_overlap 46223 46234 TTAAAAGGGTAAAAA GCGAT CTC ATCGC TTTGTAAGGCTAGAT TERM 40 46223 - 46235 + g 73 -7.7 -3.87994 | opp_overlap 46223, overlap 46234 TTAAAAGGGTAAAAA GCGAT CTC ATCGC TTTGTAAGGCTAGAT TERM 41 46830 - 46814 - G 86 -4.5 -5.4505 | opp_overlap 46814 GTTTTTAAGAAAAAA TTCAAAG TTT CTTTAAA GTGTTTTTCATTTTC TERM 42 47006 - 46992 - G 77 -8.5 -3.83214 | overlap 46993 47002 47003 GCAAAGCAAGGTAAA GGGGG GCAAA CCCCC TAGCCAAACGCATGG TERM 43 47006 - 46993 - G 71 -9.5 -2.89205 | overlap 46992 47002 47003 CAAAGCAAGGTAAAG GGGGG CAAA CCCCC TAGCCAAACGCATGG TERM 44 48091 - 48080 - G 85 -7.2 -4.99645 | overlap 48081 AGGGTATAAACAAAA GGGC GCAT GCCC ACGCCTTGAACCACG TERM 45 48155 - 48135 - G 70 -9.1 -3.11988 | overlap 48134 TTTGATTCAATAAAG TTGCATCGT TAC ACAATGCAA ACTCCCATGCTGTTT HPP12_0043 49118 - 48126 - | peptidylarginine deiminase domain-containing protein dpnA 49869 - 49177 - | adenine specific DNA methyltransferase ddeM 50933 - 49866 - | cytosine specific DNA methyltransferase HPP12_0046 52153 - 50930 - | restriction endonuclease TERM 46 51787 - 51799 + g 77 -4.8 -4.86621 | opp_overlap 51787 51786 TGCTTTCAAAAAAGC CGCT CAAAA AGCG TTTTTGATTGGGGGT HPP12_0047 53568 - 52297 - | type II R-M system restriction endonuclease HPP12_0048 56036 - 53568 - | type II R-M system methyltransferase putP 57566 - 56076 - | sodium/proline symporter putA 61150 - 57593 - | proline/delta 1-pyrroline-5-carboxylate dehydrogenase TERM 47 59231 - 59206 - G 79 -8.3 -4.0371 | gap 1 TAGTGCCTACAGAAA TGCCCACAGGGA AAT TCCATG-GGGCA ATGACCACACCCACG HPP12_0051 61472 - 61681 + | hypothetical protein TERM 48 61791 - 61807 + F 70 -8.1 -3.30124 | AAAAGGAGATATTCT TATGAGT GGC ACTCATA TTGTAGAAAATACGA HPP12_0052 61982 - 62353 + | hypothetical protein HPP12_0053 62425 - 62589 + | hypothetical protein HPP12_0054 62547 - 62735 + | hypothetical protein HPP12_0055 62737 - 63678 + | hypothetical protein TERM 49 63884 - 63872 - g 72 -9.1 -3.37879 | opp_overlap 63864 63872, overlap 63881 ATCAAGTTCAAGCAA GCGCT AAG AGCGC TTCGTGCGATTGTCA TERM 50 63872 - 63884 + G 70 -9.1 -3.19653 | opp_overlap 63872 63881, overlap 63864 ATCAAGTTCAAGCAA GCGCT AAG AGCGC TTCGTGCGATTGTCA TERM 51 64399 - 64384 - g 76 -6.8 -4.42667 | GGAAAAGTATGAAAA CCCCAC GATA GTGGAG TTCAGAGATAAAGAA HPP12_0056 63713 - 64477 + | hypothetical protein HPP12_0057 64478 - 64630 + | hypothetical protein TERM 52 64700 - 64714 + G 70 -3.6 -4.95155 | overlap 64687 AACATGCAAAATGGC GTGTTT TTG AAATAC TTTTTATCCTATCCC HPP12_0058 64688 - 64816 + | hypothetical protein HPP12_0059 64944 - 65150 + | hypothetical protein TERM 53 65212 - 65202 - g 73 -6.8 -4.18197 | ATCGTTTATGCAAAA CTCC AGT GGAG CGCGCTTGAATTTGC HPP12_0060 65194 - 66138 + | hypothetical protein TERM 54 66642 - 66622 - g 79 -9.7 -3.75845 | CAAAAGAAGCGCAAA CACCCCC TAGCTAT GGGGGTG GAAGCATTAGAATCA HPP12_0061 66135 - 66698 + | hypothetical protein HPP12_0062 66714 - 66974 + | hypothetical protein TERM 55 67278 - 67292 + G 75 -10 -3.20991 | overlap 67282 67284 GAGCTGCTGGCGCTT TGGCTG TTG CAGCCA TTGGATTGGCTTCAA HPP12_0063 67070 - 67612 + | hypothetical protein TERM 56 68292 - 68280 - gf 71 -7.7 -3.56092 | TCATCATGCCCTAAA GGCTT TAC AAGCC GCACTTAAAGACAAC HPP12_0064 67609 - 68493 + | hypothetical protein HPP12_0065 68463 - 68888 + | hypothetical protein HPP12_0066 68890 - 69237 + | hypothetical protein TERM 57 69437 - 69472 + G 90 -8.4 -5.10461 | TTAAGCTGTGGTTTA TTGCATGTTAGTGGCA AAAA TGGCGCTAACATGGAA TTTTTATTACCTAAA HPP12_0067 69230 - 69658 + | ATP-binding protein TERM 58 69836 - 69822 - g 73 -5.7 -4.56597 | CCTTGCCTTTAAAAA CGCTT TTTTT AAGCG GGGTAGATGCTTTGA HPP12_0068 69809 - 70129 + | ATP-binding protein HPP12_0069 70221 - 70346 + | ATP-binding protein HPP12_0070 70353 - 71651 + | ATP-binding protein TERM 59 71706 - 71663 - T 84 -5.4 -5.42862 | opp_overlap 71664 71676, overlap 71664 71676 ATAGGGTCAAAAAAA GGGGGGTCAAAAAGACTAAA GGGA TTTAGTCTTTTTGAAGCACT TTTAAACCTTTTGCG TERM 60 71705 - 71664 - T 79 -8.9 -3.84633 | opp_overlap 71664 71676, overlap 71663 71676 TAGGGTCAAAAAAAG GGGGGTCAAAAAGACTAAA GGGA TTTAGTCTTTTTGAAGCAC TTTTAAACCTTTTGC TERM 61 71664 - 71705 + T 85 -8.9 -4.19276 | opp_overlap 71664 71663 71676, overlap 71676 TAGGGTCAAAAAAAG GGGGGTCAAAAAGACTAAA GGGA TTTAGTCTTTTTGAAGCAC TTTTAAACCTTTTGC TERM 62 71676 - 71693 + T 80 -7.1 -4.58685 | opp_overlap 71664 71663 71676, overlap 71664 AAGGGGGGTCAAAAA GACTAAA GGGA TTTAGTC TTTTTGAAGCACTTT TERM 63 71693 - 71676 - T 80 -7.1 -4.57341 | opp_overlap 71676 71664, overlap 71664 71663 AAGGGGGGTCAAAAA GACTAAA GGGA TTTAGTC TTTTTGAAGCACTTT ureH 72505 - 71708 - | urease accessory protein UreH ureG 73104 - 72505 - | urease accessory protein UreG TERM 64 73058 - 73070 + g 70 -9.1 -3.14132 | opp_overlap 73057 73058 AAAGCTTCAATCAAG GCGGT TTT ACCGC TTCCTACAGGACCAC ureF 73897 - 73133 - | urease accessory protein UreF ureE 74421 - 73909 - | urease accessory protein UreE TERM 65 74112 - 74122 + g 75 -8.2 -4.02719 | opp_overlap 74112 74111 CGCCATAGTATAAAG CCGC ATG GCGG TTTCCTATTTCGTAG TERM 66 74395 - 74372 - G 80 -10.4 -3.72588 | opp_overlap 74366 74377 TAATCCACATTGAAA TCCAAGGGAT TTAA ATCCCTTAGA TTGCCAACTAAACGC ureI 75010 - 74423 - | urease accessory protein UreI TERM 67 75162 - 75127 - R 95 -4.9 -6.23317 | gap 1, overlap 75128 75129 ATAAAAACAAAAAAA GC-CCCCAATTTTTTG ATAAA CAAAAAATCAGAGAGC TAAAAACTAAGGATT TERM 68 75198 - 75176 - R 74 -9.2 -2.9838 | overlap 75173 75181 GCTAAAAACTAAGGA TTTAAGGAGC GTT GCTCCTAAAA AATCCTAGAAAATGC TERM 69 75193 - 75181 - R 77 -9.1 -3.15252 | overlap 75176 75173 AAACTAAGGATTTAA GGAGC GTT GCTCC TAAAAAATCCTAGAA ureB 76912 - 75203 - | urease B subunit ureA 77632 - 76916 - | urease A subunit lspA 78450 - 77977 - | lipoprotein signal peptidase TERM 70 78168 - 78190 + g 71 -4.8 -4.57569 | opp_overlap 78168 78166 CCCCGGCGCCAAACA CCATGCCAAA CTC TATCGCATGG TTTTTAAAAAGCTCC TERM 71 78268 - 78246 - G 75 -5.6 -4.67038 | overlap 78241 GCCCTAAAATCAAAA GGATTTGCAA GTA TTTCAAACCC CCCTCTAAAAAACTG TERM 72 78436 - 78420 - G 84 -6.6 -4.86033 | opp_overlap 78419 AAACCCCTATAAAAA CCAACA GGCTT TGTTGG GTGGTGTTTAGCACA HPP12_0079 79781 - 78444 - | phosphoglucosamine mutase TERM 73 78618 - 78633 + g 79 -3.2 -5.43866 | GCTATAACCTTTCAG GCTTTC TAAA GGAGGC TTTTTTTGGACATTC TERM 74 79404 - 79372 - G 72 -9.3 -3.39505 | opp_overlap 79376 79380 ACTTTATAGCTAGAA TGCAGCAATCTTTCA TCA TGAAAGATTTCTTCA ATCGCTCTTTCTTCT TERM 75 79380 - 79396 + g 77 -8.1 -4.2123 | opp_overlap 79372, overlap 79376 GCTAGAATGCAGCAA TCTTTCA TCA TGAAAGA TTTCTTCAATCGCTC TERM 76 79726 - 79742 + g 83 -12.3 -2.91695 | opp_overlap 79725 79722 79724, overlap 79723 CGCATCACAAACATG GGGGTGA GTT TCACCCC TGCTTTACCCCTCAC rpsT 79871 - 80140 + | ribosomal protein S20 TERM 77 80168 - 80179 + F 70 -2.2 -5.29445 | overlap 80167 80164 TTTGACTTCTTTAAG CTCA GTAA TGGG TTTTTATTATTGGGC TERM 78 80376 - 80363 - g 73 -2.4 -5.22312 | AGCGATATTAAAAAA CTCA CCGAAT TGAG CAAAGAGCAAAGCTC prfA 80264 - 81322 + | peptide chain release factor RF-1 TERM 79 81691 - 81675 - f 100 -9.5 -5.5074 | GAATGCAATAAAAAA GAAATCC TTA GGATTTC TCACATTAAGGAGTT HPP12_0082 81711 - 81968 + | hypothetical protein TERM 80 82250 - 82238 - g 74 -9.1 -3.49321 | overlap 82236 82234 AGGAACCAAAACACA CCGCT TCA AGCGG CACACCAAGCACTAG TERM 81 82656 - 82637 - g 81 -5.7 -5.1287 | overlap 82638 82642 CTGATACGCAAAAAA CGCAAGC CGTTAC GCTTGCA GCTGCTAGTGATAGC TERM 82 83193 - 83213 + G 72 -8.3 -3.5394 | opp_overlap 83181, overlap 83191 GAACACAAGCTACTT CCAAATGCC TGT GGAATTTGG TTTCAGGAGCAATTT horA 81979 - 83373 + | outer membrane protein HorA TERM 83 83390 - 83415 + F 89 -6.9 -5.29208 | opp_overlap 83396, overlap 83391 CCTTTCTCTTCTTTA TCAATAGAGGG TTTT CTCTCTGTTGG TTTCTTTTTTCTTTT TERM 84 83391 - 83414 + F 75 -8.2 -3.72034 | opp_overlap 83396, overlap 83390 CTTTCTCTTCTTTAT CAATAGAGGG TTTT CTCTCTGTTG GTTTCTTTTTTCTTT TERM 85 83971 - 83983 + G 75 -7.7 -4.06491 | GATTCTTTTTATAGC TACCG CAC CGGTA TTTATATCCCCTTAG TERM 86 84103 - 84093 - g 79 -6.8 -4.57218 | opp_overlap 84093 84092 ACAAGAGAATGAAAA GGCT CAA AGCC CTTATTACAGGAGCA TERM 87 84210 - 84234 + G 83 -7.1 -4.77036 | TGACTTTTATGATGG CATGTATGGGT TCT ACCCTAACATG TTTTTCATGATGCAA HPP12_0084 83620 - 85365 + | hypothetical protein TERM 88 85621 - 85600 - T 87 -10.1 -3.91897 | opp_overlap 85599 85598 TGTTTTAGTTAGAAA GCCCCTTGC TTTA GAAAGGGGC GGTTTCACAGTAAAA HPP12_0085 87726 - 85777 - | methyl-accepting chemotaxis transmembrane sensory protein (MCP-like protein) TERM 89 87919 - 87903 - R 82 -4.3 -5.47846 | AAGCAAAAAATAAAA GAGAGCC AAA GCCTCCC AAACTCCCCCAAAGA rpsI 88343 - 87954 - | 30S ribosomal protein S9 rplM 88765 - 88340 - | 50S ribosomal protein L13 TERM 90 89021 - 89039 + r 81 -6 -4.946 | opp_overlap 89020 89038, overlap 89038 GCTTAAAAAATTACC GCTTGATT AAA AACCAAGC TTTTTACTATTTGAT TERM 91 89079 - 89064 - R 71 -3.4 -5.0538 | opp_overlap 89038 89064, overlap 89038 TTTGATCGTAAAAAA TAAAAA GCCT TTTTTA TTTTCGCTCCTGATT HPP12_0088 89265 - 89077 - | hypothetical protein HPP12_0089 90624 - 89272 - | malate:quinone oxidoreductase TERM 92 89906 - 89884 - G 78 -4 -5.18371 | overlap 89888 CGGCACAAAATAAAA GCTACCCGCC ACA GGCAAGCACC CTAAATCCAATCCAT HPP12_0090 92051 - 90678 - | hypothetical protein rpoD 94114 - 92072 - | RNA polymerase sigma-80 factor TERM 93 92101 - 92115 + g 74 -9.2 -3.5944 | AGTTTCTTAAAATGC GCCCGT ATT GCGGGC TTCTCAATTTTTTAA TERM 94 92237 - 92248 + g 85 -7.2 -4.89339 | opp_overlap 92236 AAGCCCAAAACGCAT GCGG ATCA CCGC TTTTTCTCGCTCATT TERM 95 92722 - 92691 - G 75 -10.4 -3.16676 | gap 1, overlap 92689 TTCATCAAGCCAATA TTACCC-TCTTGAAT CAA ATCCAAGAAGGGTAA GCCTCTACTTGTGAA TERM 96 93305 - 93322 + g 78 -2.7 -5.46129 | TTCTACACGCTTCTT GTCTTTT TCAG AAACGAC TTTTTTCCTTTCTTC TERM 97 94074 - 94087 + g 73 -2.3 -5.1963 | TTGGCTTCCTGTTTA GCTCT TTTG GGGGC TTTTTCTTCGTTAGC TERM 98 94252 - 94270 + r 74 -6 -4.53034 | opp_overlap 94242 94250 94251 94252 94244, overlap 94260 TAAAATTTAAAAACC CCCATTTT TTA AAAAAGGG TTTTAATTGTCTGCA HPP12_0092 94998 - 94303 - | bifunctional 5'-methylthioadenosine nucleosidase fabD 95938 - 95009 - | malonyl coenzyme A-acyl carrier protein transacylase TERM 99 96301 - 96266 - H 72 -6.2 -4.40003 | overlap 96267 TTTTACAAATACAAA TTTTAGGTTGGGTG AAGAGAGA CACCCAGCCTAAAC CCTATAAGGGTTGTA TERM 100 96300 - 96267 - H 79 -9.7 -3.23279 | overlap 96266 TTTACAAATACAAAT TTTAGGTTGGGTG AAGAGAGA CACCCAGCCTAAA CCCTATAAGGGTTGT HPP12_0094 96364 - 97140 + | type II R-M system restriction endonuclease HPP12_0095 97190 - 98038 + | type II R-M system methyltransferase HPP12_0096 98944 - 98045 - | alpha-1,2-fucosyltransferase TERM 101 99038 - 99052 + r 88 -5.8 -5.63517 | GGGGTAAGTAACGCT TTCAAA TCA TTTGAA TTTTTTATTTGAAAA HPP12_0097 99574 - 99044 - | hypothetical protein HPP12_0098 99647 - 100591 + | D-2-hydroxyacid dehydrogenase TERM 102 100783 - 100748 - T 73 -7 -4.00532 | opp_overlap 100753, overlap 100753 TTCTTAAATAGGAAA GAAAAGCCTTTGAG TAACCACC CCCAAAGGCTTTTA TGACAGAGAGCGATT TERM 103 100778 - 100753 - T 88 -6.9 -5.00923 | opp_overlap 100753, overlap 100748 AAATAGGAAAGAAAA GCCTTTGAG TAACCACC CCCAAAGGC TTTTATGACAGAGAG HPP12_0099 101510 - 100797 - | hypothetical protein thrC 103071 - 101617 - | threonine synthase TERM 104 101761 - 101775 + g 90 -4.2 -5.89827 | overlap 101751 TTTTAGCACTTCTAG GGCGGT TTT ATCGTC TTTTTTTTGCTCGTT TERM 105 103418 - 103396 - g 72 -3.4 -5.09259 | opp_overlap 103398 103410, overlap 103398 103399 GATTTTAAAAGAAAA CACCTTGCGT TCT ATGCAAGATA GTTTGCATTTTAAGG TERM 106 105078 - 105068 - g 81 -6.8 -4.72386 | GAAAGGACGCAAAAA TCGC TCA GCGA AATTGAAGCCAATAT tlpA 103274 - 105301 + | methyl-accepting chemotaxis transmembrane sensory protein (MCP-like protein) TERM 107 106061 - 106047 - g 73 -5.8 -4.56597 | opp_overlap 106047 GTGGCTTTCTAAAAA TTCAAA CCC TTTGAA TTGCTACATTTTAGC TERM 108 106267 - 106221 - g 70 -2.7 -5.0538 | gap 2, overlap 106237 TCTTATGGCAAAAAA CTACGATAATTTAAAAGAGTTAA ACC TTAACCC-CTTAAATTAT-GAAG AAGAGTTGTCTTTAA TERM 109 106253 - 106237 - g 70 -5.9 -4.33151 | overlap 106221 TACGATAATTTAAAA GAGTTAA ACC TTAACCC CTTAAATTATGAAGA HPP12_0102 105301 - 106407 + | hypothetical protein HPP12_0103 106526 - 107287 + | hypothetical protein HPP12_0104 108052 - 107270 - | glycosyl transferase tlpB 109769 - 108084 - | methyl-accepting chemotaxis transmembrane sensory protein (MCP-like protein) TERM 110 109604 - 109617 + g 74 -3.8 -5.0916 | opp_overlap 109604 TTGTCATGTAAGCGA GCGT TTTTTC ACGC TTTTTGTATTGCCCG cpdB 111726 - 109981 - | 2',3'-cyclic-nucleotide 2'-phosphodiesterase TERM 111 110630 - 110646 + g 70 -7.9 -3.64184 | opp_overlap 110643, overlap 110632 AAATTGAATAAGGCT GCCGCTG AAA CATCGGC TTTGGCGTAATATTT HPP12_0107 112334 - 111867 - | autoinducer-2 synthase metB 113514 - 112372 - | cystathionine gamma-synthase cysK 114456 - 113539 - | cysteine synthetase TERM 112 113782 - 113768 - G 70 -2.8 -5.01732 | AAGTTTGCGAAAAAA GGAG GGATGAA CTCC ACGCCAATGCCCTCA HPP12_0110 114571 - 115056 + | hypothetical protein TERM 113 115206 - 115188 - T 83 -10.4 -3.29461 | opp_overlap 115177, overlap 115177 GAACTCCCCCCATAA GGGATTTT TCT AAAATCCC ACCAACGCTTTTTAA TERM 114 115361 - 115333 - T 70 -4.5 -4.68539 | opp_overlap 115359 ATGAAAATGAGAAAA GCAAGCGGGTT TTCATTG AAACCGCCCGC TTAAAAGAAGTTTTT dnaK 117248 - 115386 - | chaperone and heat shock protein 70 DnaK TERM 115 116443 - 116453 + g 72 -3.2 -5.15117 | TCAGTCTCCATCGCA GAGC TCA GTTC TTTTTTAGCGTTTTC TERM 116 117208 - 117197 - G 71 -7.2 -3.86015 | opp_overlap 117196 CATTGCCTTCATAAA CCGC CATT GCGG AGTTGGTTGTCCCTA grpE 117854 - 117279 - | CO-chaperone and heat shock protein 24 GrpE HPP12_0113 118684 - 117854 - | heat-inducible transcription repressor of class I heat shock protein TERM 117 118302 - 118312 + g 79 -3.2 -5.40474 | ACTCTTTCTAAACGC TCCA AAC TGGG TTTTTTTAACAGCGT TERM 118 118351 - 118363 + g 86 -7.7 -4.87893 | CAAAATTTTCACTCG CGCTT TTT AAGCG TTTTTCATTCACCTT TERM 119 118764 - 118721 - H 73 -4.2 -4.95758 | gap 1, overlap 118729 ATTATAGCATAAAAA GTTAATAATCTATCACTTGTT TTG AAAAAGTGATAAAA-ATTAAC CGATTTTTCTTTAAA TERM 120 118757 - 118729 - H 70 -6.9 -3.86063 | overlap 118721 ATAAAAAGTTAATAA TCTATCACTTGTT TTG AAAAAGTGATAAA AATTAACCGATTTTT HPP12_0114 118895 - 119533 + | L-fuculose-1-phosphate aldolase HPP12_0115 119554 - 119850 + | hypothetical protein HPP12_0116 121745 - 119862 - | hypothetical protein TERM 121 120755 - 120743 - G 70 -3.4 -4.98531 | overlap 120744 120745 GGTGCAAATCAAAAA GGTT GGTGT AACC AAAGGGGCGGAAACT TERM 122 121788 - 121777 - R 88 -7.2 -4.94222 | opp_overlap 121776 121777 121784 121785 AATAACTGATAAAAA GGGC TAAC GCCC CTTTGAATTAAAAGG flaB 123352 - 121808 - | flagellin B TERM 123 124734 - 124745 + G 75 -5.8 -4.76644 | AGTTTAAAGCTAGTG GGAG AAAG CTCC TTTTTGATGGCTATT TERM 124 125001 - 125016 + G 73 -6.8 -4.15565 | opp_overlap 124999 125001 AAAAAAAGCAAATCA GCGCTT TAGA GAGCGC TTTTAAGGTGATAGA topA-1 123518 - 125728 + | DNA topoisomerase I TERM 125 125835 - 125814 - g 74 -4.5 -5.00616 | opp_overlap 125817, overlap 125817 TCGCCCTCTAAAAAA CAATGCAAT TACA ATTGCATTT ATTGCGAGTTGGGTA TERM 126 125832 - 125817 - g 77 -6.2 -4.61482 | opp_overlap 125817, overlap 125814 CCCTCTAAAAAACAA TGCAAT TACA ATTGCA TTTATTGCGAGTTGG TERM 127 125817 - 125832 + G 71 -6.2 -4.183 | opp_overlap 125817 125814 CCCTCTAAAAAACAA TGCAAT TACA ATTGCA TTTATTGCGAGTTGG TERM 128 126105 - 126119 + G 70 -3.6 -4.87133 | CAAGCCTTAAAGGAA TTTGAC ATC GTTAAA TTTTCTTTAGACGCT HPP12_0119 125721 - 126647 + | radical SAM domain-containing protein HPP12_0120 128003 - 126786 - | hypothetical protein ppsA 130539 - 128113 - | phosphoenolpyruvate synthase TERM 129 128685 - 128704 + g 74 -5 -4.78572 | gap 1 AATACCGACTAGCCC CCCTATAGC CAA GC-ATGGGG TTTTCTTCATTAGGC TERM 130 128833 - 128853 + g 73 -8.5 -3.66654 | GCCAATGCCTTCAGC GATTTTTTT CAC AAAAAAATC TTTAGGGTTAGCATA TERM 131 129479 - 129490 + g 70 -3 -5.03961 | TTGAATTTGAATTTT TCAA AGAC TTGA TTTTCTTCTTTGGTT HPP12_0122 130707 - 130856 + | hypothetical protein TERM 132 132412 - 132422 + G 79 -6.8 -4.55295 | AGCGAACATTTTGGG GGGA ATT TCCC TTTCTTTGTCGCGCC thrS 130897 - 132735 + | threonyl-tRNA synthetase infC 132732 - 133343 + | translation initiation factor If-3 rpmI 133324 - 133518 + | ribosomal protein L35 rplT 133612 - 133962 + | 50S ribosomal protein L20 TERM 133 134012 - 134041 + F 80 -10.3 -2.97768 | opp_overlap 134012 134020, overlap 134011 AAAAAGGTGAGAGGA TTTAGGAATTTTT ACTA AAAAGTTCCTAAA ATTGATTTTTGTTTC TERM 134 134257 - 134243 - g 75 -2.8 -5.1963 | CCTAAGCAAGAAAAA GCTATT AAG ACTAGC CCTACCAAAAAAGGT horB 134162 - 135022 + | outer membrane protein HorB HPP12_0128 135383 - 135820 + | hypothetical protein TERM 135 135816 - 135838 + F 89 -3.4 -5.85011 | opp_overlap 135817, overlap 135817 CAAGCCATCATAAGC ATTAGCGC TTAAGGT GCGCTAAC TTTTTTTGATTTTTG TERM 136 135817 - 135837 + F 73 -6.9 -4.07346 | opp_overlap 135817, overlap 135816 AAGCCATCATAAGCA TTAGCGC TTAAGGT GCGCTAA CTTTTTTTGATTTTT TERM 137 135862 - 135901 + F 100 -10 -4.47259 | gap 1, opp_overlap 135859 135862 ATTTTTGTAAAACCA CGCCGTAAGCCCC-TAGCT TTT GGCTGTGGGGATTAGGGCG TTTTCGTGTTATAAT TERM 138 137027 - 136999 - g 87 -5.3 -5.4756 | overlap 137000 AAGCCCAAGAAAAAA CGCCGCCTTTC AAAGAAA GAAAGGCAACA ACAAGCCTTGCAACA HPP12_0129 136225 - 137088 + | hypothetical protein HPP12_0130 139095 - 137728 - | L-serine/L-threonine deaminase TERM 139 138090 - 138103 + g 78 -3.8 -5.18726 | ACCCCGCTTCTGCGC CGCT CAAGGA AGCG TTTTTCTTGTAAAGA sdaC 140336 - 139095 - | L-serine transporter TERM 140 141672 - 141656 - g 83 -5.1 -5.27335 | overlap 141658 GTGTTGAAAGAAAAA CGCCATA TTT TATGGAG CATTGATCCCATGCA HPP12_0132 140630 - 141979 + | tyrosine-regulated 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase (DAHP synthase) HPP12_0133 142269 - 142403 + | hypothetical protein bcp 143104 - 142646 - | bacterioferritin comigratory protein TERM 141 142974 - 143008 + g 76 -3.6 -5.24129 | overlap 142968 142976 TCTAAGGTGCATCCT GGGGTGTTGTCTTT AGGGTAG AAATACAGCACCAC TTTTTTATGGAGCAA HPP12_0135 143749 - 143114 - | hypothetical protein HPP12_0136 145187 - 143742 - | iron-sulfur electron transport protein HPP12_0137 145944 - 145216 - | Fe-S oxidoreductase TERM 142 145257 - 145277 + g 74 -4 -5.08824 | AGTCGTAAAAATGCA TGGGTTTT GTTAG AGAGCCCA TTTTTTGCATAGCGG TERM 143 146747 - 146764 + G 88 -7.7 -5.17576 | AGATTTCTCAAATGG TGGGCAG GGTG TTGCCCA TTTTTTCCATTGGTA TERM 144 147045 - 147028 - g 74 -4.1 -5.1634 | opp_overlap 147028 ATAAACACAGAAAAA CACCATA TTTG TAAGGTG GTTGTGGCGTGGATG lldP-1 146167 - 147816 + | L-lactate permease TERM 145 148313 - 148330 + G 83 -9.9 -3.90318 | CGCAGCGATTTTAGT GGGCTTA GGGT TAAGCCC TTTATACGCTGCTGG TERM 146 148548 - 148564 + G 75 -2.9 -5.30616 | AAAGAGACTTTTCCG GCCGT TTTTATC GCGGC TTTTTCTTTCGCTGG TERM 147 149300 - 149310 + G 71 -6.8 -4.11216 | CGCCCAACGATTGCA CCTC CCT GAGG TTTTAACCCTAACGG lldP-2 147873 - 149528 + | L-lactate permease HPP12_0140 149784 - 149479 - | hypothetical protein mutY 150643 - 149774 - | A/G-specific adenine glycosylase TERM 148 150018 - 150033 + g 78 -4 -5.24129 | opp_overlap 150018 TGGTGCATCCCAAAA TAGAGT TTTT GCTCTA TTTTTTCTAAAGCGA HPP12_0142 152209 - 150761 - | sodium:sulfate symporter transmembrane region domain-containing protein TERM 149 151029 - 151015 - G 90 -8.5 -4.8543 | CAATCCCTACAAAAA GCGCG AATAA CGCGC TCACATGGGCGGTGA TERM 150 152123 - 152109 - G 75 -2.8 -5.30339 | ATGAAAATACAAAAA TAAAGC CAT GCGTTA GGGTTTAACCCGTCC fixN 152379 - 153845 + | cytochrome C oxidase heme B and copper-binding subunit fixO 153858 - 154556 + | cytochrome C oxidase monoheme subunit fixQ 154567 - 154785 + | cytochrome C oxidase subunit Q TERM 151 155129 - 155099 - g 77 -4.9 -4.93365 | gap 1 GCGCACAACCAAAAA TTTGAAGCCAAATG GAAG CATTTGGGT-CAAA AGGAATTAGTGGATA TERM 152 155415 - 155395 - g 76 -3.2 -5.31158 | TAAAAAAACCAAAAA CCCTCAAC TCATT GATAAGGG CAAGGAGCTGTTTGA fixP 154787 - 155665 + | cytochrome C oxidase diheme subunit HPP12_0147 155676 - 155882 + | hypothetical protein TERM 153 156298 - 156278 - g 81 -5.5 -5.03715 | ATGACGCTCAAAAAA TAGAATTAG TGG CTAACCCTA AAGATTTGTTAGACA HPP12_0148 155983 - 156570 + | hypothetical protein HPP12_0149 156582 - 157163 + | hypothetical protein TERM 154 157945 - 157961 + G 86 -8.1 -4.84311 | overlap 157953 CCTTTTATGGGGGGT GGATTTT TTA AAAATCC TTTTATTGTATGGGG HPP12_0150 157250 - 158017 + | hypothetical protein HPP12_0151 158877 - 158014 - | hypothetical protein TERM 155 158164 - 158193 + g 73 -10.1 -2.80244 | overlap 158163 CGTTGAAGTTTCATT CGCATACAAGCTT AAAT AAGTTTGTAAGCG CTCTTTATTGACACG recA 158975 - 160018 + | recombinase RecA TERM 156 161029 - 161019 - g 89 -5.4 -5.47821 | AGGCATTGAAAAAAA CGTT GCG AACG CCATTTTAATCAAAC eno 160030 - 161310 + | enolase HPP12_0154 161303 - 161578 + | hypothetical protein HPP12_0155 161595 - 162191 + | hypothetical protein aroK 162196 - 162684 + | shikimic acid kinase I HPP12_0157 162706 - 163662 + | general glycosylation pathway protein HPP12_0158 164762 - 163659 - | lipopolysaccharide 1,2-glycosyltransferase TERM 157 164776 - 164786 + H 77 -5.4 -4.90917 | overlap 164772 ATTTTAAGTGGTTTT CCTA AAA TAGG TTTTTAATTAAATTT hcpD 164914 - 165834 + | cysteine-rich protein D TERM 158 166241 - 166191 - T 76 -6.5 -4.61482 | overlap 166193 TTTTTTAAAAAAGAA TATTGAATAAAGCTTTCATGTTT GATAA AAACAAAAAACCTTTATTCAATC AAAATAAAATTAAAA TERM 159 166239 - 166193 - T 85 -9.1 -3.91465 | overlap 166191 TTTTAAAAAAGAATA TTGAATAAAGCTTTCATGTTT GATAA AAACAAAAAACCTTTATTCAA TCAAAATAAAATTAA HPP12_0160 167084 - 166362 - | hypothetical protein hemB 168056 - 167085 - | delta-aminolevulinic acid dehydratase TERM 160 167720 - 167738 + g 76 -4.6 -5.10077 | opp_overlap 167720 ACAAATCCGCTATAA CGATTAAA TCC TTGAATCG TTTTTTAACCTCTTT HPP12_0162 169409 - 168066 - | histidine kinase sensor protein ompR 170112 - 169435 - | response regulator TERM 161 170291 - 170320 + r 82 -7.5 -4.59853 | opp_overlap 170293, overlap 170293 170319 TTTGTTTTCATGGAA TATTAAAAAATAA AGTC TTATTTTTTAATG TTTTTAAACAATTCC TERM 162 170293 - 170318 + r 76 -7.9 -3.91164 | opp_overlap 170293, overlap 170291 TGTTTTCATGGAATA TTAAAAAATAA AGTC TTATTTTTTAA TGTTTTTAAACAATT HPP12_0164 170824 - 170348 - | hypothetical protein TERM 163 170752 - 170763 + g 73 -2.2 -5.22943 | opp_overlap 170742, overlap 170742 TAAAACCATCATCAA TGGT TTTA GCCA TTTTTTCAATTTCAT HPP12_0165 171066 - 170803 - | hypothetical protein TERM 164 170955 - 170972 + g 100 -4.8 -5.79526 | TCATTTGTTTTAACG CCTCTG CATGGT CAGGGG TTTTTTTTAAAATAT HPP12_0166 172376 - 171096 - | collagenase HPP12_0167 173086 - 172379 - | hypothetical protein prfB 174247 - 173156 - | peptide chain release factor RF-2 TERM 165 174019 - 174033 + g 75 -2.8 -5.19261 | ATTCTACGCTTTCAT CTAAAG AAT CTTTCG TTTTTTGATAGGTTT TERM 166 174198 - 174186 - G 70 -7.7 -3.78775 | opp_overlap 174185 174186 GGCTTGATGATTAAA GCGAT ATT ATCGC ATTTGTTTTGCAAGC moeA 175483 - 174308 - | molybdopterin biosynthesis protein fliR 176260 - 175493 - | flagellar biosynthetic protein HPP12_0171 176982 - 176254 - | hypothetical protein TERM 167 177156 - 177142 - H 81 -7.8 -4.29348 | TATATAAAATAATAA CCCTGG TAA CCAAGG AAAGAAAATGCATGC TERM 168 177365 - 177375 + H 71 -5.4 -4.58424 | AAGCATTTCTTACCC CTCA ATG TGAG TTTTCTATAATCATG HPP12_0172 177456 - 178355 + | peptidyl-prolyl cis-trans isomerase C TERM 169 179058 - 179088 + G 71 -4.8 -4.57837 | opp_overlap 179066 GGACGCTGGAGGCGA TTTAAAAGGCTC TAAGGGC GTGCCTTTTGAA TTTTTACAAGAATCT fba 178372 - 179295 + | fructose-bisphosphate aldolase TERM 170 179694 - 179708 + G 70 -7.8 -3.62591 | GATTTCAGTGGATGT GCCGCA AGT TGTGGC TTTAAAGATTGTAGA efp 179317 - 179880 + | translation elongation factor Ef-P TERM 171 179927 - 179949 + T 70 -7 -3.78141 | opp_overlap 179930, overlap 179930 CACAGCTTTTTATCA TAAGGGTGTT ATT AGCCCCCTTA TTTGAGCTTTGTTTA TERM 172 180186 - 180196 + T 74 -5.4 -4.65916 | opp_overlap 180186 TGGGTATAAGAAGAA CTTG CAC CAAG TTTTATTGAAATGGA HPP12_0175 180772 - 180329 - | hypothetical protein HPP12_0176 180968 - 181249 + | hypothetical protein HPP12_0177 181258 - 181527 + | hypothetical protein HPP12_0178 182904 - 181882 - | sialic acid synthase HPP12_0179 183549 - 182908 - | ABC transporter ATP-binding protein TERM 173 183325 - 183343 + g 74 -9 -3.55761 | TTTTAAGCGCCGTAA TTCCAAAA GCT TTTTGGAA TTTAAGGCATAAATA HPP12_0180 184823 - 183546 - | apolipoprotein N-acyltransferase TERM 174 184124 - 184140 + g 73 -8.7 -3.75884 | CAATCAAGGTTTTTT GCTTGCT TTG AGCGAGC TTGATTTCTTTAAGA HPP12_0181 185054 - 185776 + | hypothetical protein TERM 175 187032 - 187014 - g 78 -7.5 -4.46112 | TCGCAGGGAAAGAAA TCGCTAA CGGCT TTAGCGA GTTGAACGATCCTTT lysS 185786 - 187291 + | lysyl-tRNA synthetase TERM 176 188329 - 188316 - g 76 -4.5 -5.07486 | CACCGTGAATAAAAA CACCA TTCC TGGCG AAACGCGCAGCCCTT glyA 187291 - 188541 + | serine hydroxymethyltransferase HPP12_0184 188552 - 189094 + | hypothetical protein HPP12_0185 189116 - 189925 + | hypothetical protein TERM 177 190012 - 189990 - T 78 -7.7 -4.14392 | GTCCAAGCGCTAAAA CGATGGGGT GGCTT ACTCCATCG GCTCGGATAATTTTA HPP12_0186 191033 - 190314 - | hypothetical protein HPP12_0187 191534 - 191073 - | hypothetical protein HPP12_0188 191867 - 191535 - | hypothetical protein HPP12_0189 192030 - 191854 - | hypothetical protein HPP12_0190 192189 - 192722 + | hypothetical protein HPP12_0191 194236 - 192728 - | phospholipase D-family protein TERM 178 193000 - 192990 - G 70 -5.4 -4.44797 | GGATCAATATTAAAA CTTC CTA GAAG CGTTAAATTGTCATC TERM 179 193990 - 194001 + g 76 -4.4 -5.12617 | overlap 193994 TATAGATATAAGTTT GCAT GTCA ATGC TTTTTTGACTCATTC frdB 194995 - 194258 - | fumarate reductase frdA 197132 - 194988 - | fumarate reductase flavoprotein subunit TERM 180 196179 - 196190 + g 75 -5.8 -4.7173 | CCCATAGGGCGATTT GGCT CCAT AGCC TTTTTGGATATGCTC frdC 197909 - 197142 - | fumarate reductase cytochrome B subunit TERM 181 197425 - 197409 - G 70 -5.9 -4.46854 | overlap 197404 ATACAAAAGCCAAAA GTTTTGC GTT ACAAAAC GATAGCTTGAGCCAT HPP12_0195 198115 - 198819 + | triosephosphate isomerase fabI 198829 - 199662 + | enoyl-(acyl-carrier-protein) reductase lpxD 199662 - 200672 + | UDP-3-O-(3-hydroxymyristoyl) glucosamine N-acyltransferase TERM 182 200813 - 200795 - g 74 -6 -4.38712 | opp_overlap 200808, overlap 200797 200808 GGCATCCTGATAAAA TGGCTGAT CAA ATCAGCGA TGCGGTTTTAGATTA TERM 183 201057 - 201038 - g 73 -8.6 -3.72576 | opp_overlap 201031 GCGTTGGCGAGCAAA GCCCTGAT ATTA ATCAAGGC GTGGATAGAGAAGAT TERM 184 201217 - 201194 - g 70 -3.2 -5.00616 | overlap 201199 CTCTGGCTCAAAAAA GAAAAGACAA CACT TTGCCTTTTT TAAGGCCTGATGGCA TERM 185 201212 - 201199 - g 79 -3.1 -5.42198 | overlap 201194 GCTCAAAAAAGAAAA GACAA CACT TTGCC TTTTTTAAGGCCTGA metK 200737 - 201894 + | S-adenosylmethionine synthetase TERM 186 202339 - 202350 + G 70 -3 -5.03314 | opp_overlap 202339 GAAAACGCACACAAT GAAA TCGC TTTC TTTTTTGCCACTAGA ndk 201961 - 202374 + | nucleoside diphosphate kinase TERM 187 202665 - 202683 + G 70 -3.2 -4.84642 | overlap 202666 202668 202677 TTGATAATTTAGATG TTATTGAA TCT TTCAATGG TTTTATTGATTTGAG HPP12_0200 202400 - 202756 + | hypothetical protein rpmF 202772 - 202918 + | 50S ribosomal protein L32 plsX 202985 - 204004 + | fatty acid/phospholipid synthesis protein TERM 188 204476 - 204462 - g 78 -4.2 -5.24129 | opp_overlap 204462 TGGGGGCAGAAAAAA CGAGCA GCG TGCTAG ATTTTAAGGATAGGG fabH 204029 - 205021 + | beta-ketoacyl-acyl carrier protein synthase III HPP12_0204 205042 - 205344 + | hypothetical protein HPP12_0205 206017 - 205634 - | hypothetical protein HPP12_0206 208924 - 206033 - | hypothetical protein TERM 189 206710 - 206721 + gr 74 -4.4 -4.96501 | opp_overlap 206710 AACTATTCTTAATCA CAGA GCCT TCTG TTTCTTTTTCTACAA TERM 190 207934 - 207946 + gr 70 -3.4 -4.95167 | CTAAAGTTTTTATAT TCTC CCAAA GAGA TTTTCTTGTTGATTC TERM 191 208234 - 208248 + gr 73 -2.2 -5.27023 | TTTTTTCAAGGTATT TTAAAG AAT TTTTAA TTTTCTTTTTAAGGT HPP12_0207 209211 - 208897 - | hypothetical protein HPP12_0208 209308 - 210414 + | mrp related protein TERM 192 210425 - 210439 + F 89 -8.6 -4.29396 | opp_overlap 210424 ATTAGTTTTGAAAGG GGGTTT AAA AAACCC TTTTAATCAATCGTT TERM 193 210734 - 210724 - f 71 -5.4 -4.57569 | TTATCGCCCCAAAAA TGCA GCA TGCA CGCTTCTTTAAAGCT hofA 211741 - 213093 + | outer membrane protein HofA TERM 194 213430 - 213416 - g 83 -3.6 -5.65177 | ATAGCCAGAAAAAAA CCTTAA CGA TTAAAG ATAATGGTATAGGCA TERM 195 213466 - 213456 - g 79 -5.4 -4.88067 | overlap 213457 AGGCATGGATAAAAA CGAT CTC ATCG AGCATCTAGGCACGA htpG 213196 - 215061 + | chaperone and heat shock protein 90 hcpA 216011 - 215259 - | cysteine-rich protein A dapE 217243 - 216092 - | succinyl-diaminopimelate desuccinylase gidA 219119 - 217254 - | glucose inhibited division protein A TERM 196 218599 - 218616 + g 71 -6.3 -4.30576 | opp_overlap 218590, overlap 218589 TTAGAAGCGTTTTCC CCAAAGC GCCC GTTTTGG TTTTGGTGCTCGCCA TERM 197 218665 - 218675 + g 85 -5.4 -5.24449 | AAAAAAGTGCCTGTG GTGA TGA TCAC TTTTTTAGCTTTATA TERM 198 220588 - 220603 + G 77 -6 -4.60889 | opp_overlap 220587, overlap 220587 AATCACTTCTAACAC CGCCAC TGCT GCGGCG TTTTTACCGGTGATT HPP12_0215 219215 - 220861 + | sodium-dependent transporter TERM 199 221200 - 221212 + G 81 -5.5 -5.16472 | TTTACCCTTTTTATA CCCAG GCG TTGGG TTTTTTGCACTTTTT cdsA 220874 - 221674 + | cdp-diacylglycerol synthetase TERM 200 222208 - 222196 - g 73 -6.9 -4.18494 | overlap 222197 222206 TATCGCTATTCAAAA CGCGC AAA ACGCG CTCAAGCACCCTAAT TERM 201 222530 - 222546 + G 70 -8.7 -3.32066 | CCCATTAGCATGGAG CGCTACA CTT TGTGGCG TTATAAAGACTTGTT HPP12_0217 221675 - 222781 + | 1-deoxy-D-xylulose 5-phosphate reductoisomerase TERM 202 223541 - 223551 + G 71 -4 -4.99035 | opp_overlap 223541 TATGACGCTAAAAAA CTTT ATG AAAG TTTTTATATCCCTAA TERM 203 223551 - 223541 - g 74 -4 -5.06451 | opp_overlap 223541 TATGACGCTAAAAAA CTTT ATG AAAG TTTTTATATCCCTAA HPP12_0218 222832 - 223960 + | beta-1,4-N-acetylgalactosamyltransferase HPP12_0219 224579 - 224028 - | phospholipid-binding protein TERM 204 224409 - 224376 - G 75 -8.2 -3.98083 | gap 1, opp_overlap 224375, overlap 224379 GACCCAATGGACAAA CGA-CATGCCGCACA CTTTT TGCGCGTCATGATCG ATGAGTTCTAACGCA HPP12_0220 224725 - 225186 + | hypothetical protein TERM 205 225804 - 225789 - g 86 -4.6 -5.39721 | opp_overlap 225790, overlap 225790 CGATCACAGAAAAAA CCGCTC TAGT GAGCGT GATGTGGGCGAATAA TERM 206 225803 - 225790 - g 73 -8.1 -3.82748 | opp_overlap 225790, overlap 225789 GATCACAGAAAAAAC CGCTC TAGT GAGCG TGATGTGGGCGAATA HPP12_0221 225356 - 226519 + | cysteine desulfurase HPP12_0222 226541 - 227521 + | nifu-like protein TERM 207 227778 - 227766 - f 89 -3.3 -5.7946 | opp_overlap 227760 227766 GTGCTAATAAAAAAA CTCGC GCT GTGAG TTTGTATTTTTCTGA TERM 208 227766 - 227778 + F 71 -5.5 -4.60808 | opp_overlap 227766, overlap 227760 GTGCTAATAAAAAAA CTCGC GCT GTGAG TTTGTATTTTTCTGA HPP12_0223 227774 - 227908 + | hypothetical protein TERM 209 228139 - 228125 - g 72 -8.6 -3.51161 | GAAAGTTTTATAGAA TTGAGC CAA GCTCAA AAGGAAGTTTTAAAC TERM 210 228201 - 228189 - g 72 -3.3 -5.11033 | CACAAGCGCAAAAAA GCGTT TCT ATCGC TGCAATTGAGCATGA TERM 211 228848 - 228862 + G 78 -2.8 -5.40072 | opp_overlap 228848 TTGGTGAGCGCTAAA GAAGCT TCA AGCTTG TTTTTTTCCAAAGAA radA 228020 - 229366 + | DNA repair protein RadA HPP12_0225 229490 - 230569 + | peptide methionine sulfoxide reductase TERM 212 230586 - 230599 + T 80 -9.5 -3.64236 | opp_overlap 230570 230562 GGGTAATGACTAGTG CCCCC TAAT GGGGG TTTAAGCGTTTGGGT TERM 213 230654 - 230664 + T 72 -2.6 -5.27477 | CGCTAAAATCCGCCT TAAA TAA TTTA TTTTTTAATTACCCT TERM 214 230757 - 230775 + T 79 -4 -5.58051 | AACTTTTTATTTTTT TTAAAAAT GGG GTTTTTAA TTTTATTTTTTGTTT HPP12_0226 231753 - 230920 - | integral membrane protein TERM 215 231430 - 231418 - G 73 -7.7 -3.89524 | overlap 231404 AGCGTATTTGATAAA GGTGT AGC ACACC ACCACCACAAACACG TERM 216 231961 - 231945 - R 78 -7.3 -4.41348 | opp_overlap 231945 231946, overlap 231946 GCGTTTTTAAACAAA CCCCTTT TTT AAAGAGG GTTTTTAGTAAGCAA TERM 217 231946 - 231962 + r 83 -7.3 -4.72272 | opp_overlap 231945 231946, overlap 231945 CGTTTTTAAACAAAC CCCTTTT TTA AAGAGGG TTTTTAGTAAGCAAA hopM 234053 - 231966 - | outer membrane protein HopM TERM 218 233435 - 233460 + g 77 -6.2 -4.54727 | gap 1, opp_overlap 233439, overlap 233436 TATTTTTGGAGCTAT TCAAGGCAGGC ATCCC GCCT-CCTTGG TTTTGGTTTAAAGCG HPP12_0228 234301 - 235458 + | sulfate permease TERM 219 235699 - 235663 - T 70 -2.3 -5.24989 | opp_overlap 235655 235668, overlap 235655 TGAGAGACCAAAAAA TTGGCTTTGTTCTCATT AAT AATGAGAACCGATTCAA TATCAATAGGCCAAA hopA 237165 - 235702 - | outer membrane protein HopA TERM 220 237276 - 237296 + r 86 -2.6 -5.89947 | opp_overlap 237276 TTTTAATAAAATTGA GCAAAAAT CAAGA AATTTTGC TTTTTTTTGGATTTA kdsB 238083 - 237352 - | 3-deoxy-manno-octulosonate cytidylyltransferase TERM 221 238633 - 238643 + G 70 -5.4 -4.3277 | opp_overlap 238633 TAACGCTGCAAATAA GGAT AAA ATCC TTTATATTGTCTCTG HPP12_0231 238193 - 238990 + | disulphide isomerase TERM 222 239127 - 239117 - g 93 -6.8 -5.40464 | opp_overlap 239117, overlap 239125 GATGACAAACAAAAA GAGC AAA GCTC TTTGAGTCAAAGCGT HPP12_0232 239006 - 239659 + | motility protein TERM 223 240253 - 240263 + G 70 -3.2 -5.00616 | AATATTGAAGAAGAG TGCA CCA TGCG TTTTTTGCAAGACGC HPP12_0233 239683 - 240855 + | glutathionespermidine synthetase HPP12_0234 240855 - 241385 + | integral membrane protein TERM 224 241481 - 241470 - T 91 -4.4 -5.85244 | opp_overlap 241472 AACCAAAATAAAAAA GCTT GCGT AAGC GATAATTTCTCATAA TERM 225 241488 - 241520 + T 71 -6.3 -4.24432 | opp_overlap 241487 241488, overlap 241483 TGCGTAAGCGATAAT TTCTCATAACGCGCT CTT AGGGGGTTAGGAGAA TTTAGTTTTGGGTTT TERM 226 241957 - 241945 - T 71 -3.5 -5.13741 | CTAACCTAACAAAAA TTTAT ACT ATAAA AACACGCTAACAAAC TERM 227 242020 - 241995 - T 76 -4.1 -5.11937 | overlap 241997 AACAACCGCAAAAAA CATTCAAAAAG TTTT CTTTTTGAAAA TAGACAAATCCCTAA TERM 228 242018 - 241997 - T 85 -8.9 -4.17355 | overlap 241995 CAACCGCAAAAAACA TTCAAAAAG TTTT CTTTTTGAA AATAGACAAATCCCT hcpE 243216 - 242155 - | cysteine-rich protein E TERM 229 242217 - 242236 + g 72 -3.6 -5.13648 | overlap 242218 CTAGCTTACAGCCCT TGTCATAA ATCA TTATGGCG TTTTCTTTATCTTTC HPP12_0236 243680 - 243309 - | hypothetical protein TERM 230 243493 - 243517 + g 74 -5.1 -4.76802 | TAGAGGATTTTTTTT TCGCCTTTT TCATAAT AAAAGGTGA TTTCTTGTTTTTCGC hemC 244600 - 243680 - | porphobilinogen deaminase proS 246344 - 244611 - | prolyl-tRNA synthetase hemA 247697 - 246348 - | glutamyl-tRNA reductase TERM 231 247088 - 247103 + g 91 -6.1 -5.38249 | GAGCCATCTCGCCAA GCCCT ATCACA AGGGC TTTTTTATCCTTAAT ispB 248620 - 247697 - | octaprenyl-diphosphate synthase HPP12_0241 249025 - 248630 - | hypothetical protein HPP12_0242 249302 - 249018 - | hypothetical protein napA 249757 - 249323 - | neutrophil-activating protein A TERM 232 249449 - 249474 + g 76 -6.9 -4.43208 | CTCTTTAAATTCTTT TTCTAGGTGTT TGTA ATCGCCTAGAA TTTCTTTAAAGATGT HPP12_0244 251108 - 249963 - | histidine kinase sensor protein TERM 233 250181 - 250167 - G 70 -5.8 -4.46073 | opp_overlap 250175 GGTGAATACAATAAA TTCATT TTG AATGAA CGCTTCAATCTTCAC TERM 234 250668 - 250690 + g 70 -2.7 -5.17488 | TTGCTTGCCCTGAAT GCTGTTTTG CTGGA CTAAATAGC TTTTATTTTCATGTT HPP12_0245 251422 - 251105 - | hypothetical protein flgI 252447 - 251419 - | flagellar basal-body P-ring protein TERM 235 251489 - 251504 + g 76 -3.2 -5.25803 | ATTGAAACCATCCCC TTAGCG CTCA CGCCAA TTTTTTGTAAGGCTT deaD 252636 - 254114 + | ATP-dependent RNA helicase TERM 236 254185 - 254173 - g 88 -4.1 -5.75538 | TTTAAAAAAGAAAAA TCCTC AAA GAGAA ACCCCCACGCCTAAT HPP12_0248 254135 - 255223 + | spfH domain-containing protein HPP12_0249 255230 - 255769 + | hypothetical protein TERM 237 255789 - 255776 - T 70 -2.3 -5.36441 | TGTTTATAGAAAAAA GCGAT TAAA AACGC TAAAGACATAAATTT TERM 238 255824 - 255814 - T 74 -5.4 -4.69559 | overlap 255810 AAATTTTAAAATAAA GCTT TTA AAGC CTGGACTCTAACAAA HPP12_0250 257368 - 255818 - | oligopeptide permease TERM 239 257012 - 257024 + g 71 -4.1 -4.95155 | TTTTTCTTTAAGGAG CGTTT GAG AAGCG TTTTTATGGTGTAAA hopF 258741 - 260204 + | outer membrane protein HopF TERM 240 260652 - 260642 - g 85 -6.8 -5.13741 | TGAAGCGAATAAAAA CGCT TAT AGCG TTCAAGCCTTGCAAG TERM 241 260880 - 260868 - g 83 -9.1 -4.07568 | TCGGTGTTTTTAAAA GGGCT ATT AGCCC AAATGCAACTTTTTA hopG 260217 - 261629 + | outer membrane protein HopG purA 261727 - 262962 + | adenylosuccinate synthetase TERM 242 263037 - 263024 - g 79 -6.7 -4.50259 | opp_overlap 263024 263023 AAAAATAGAGCAAAA GCTTG AAAG CAAGC GTTTAGAATTGCAAC TERM 243 263287 - 263272 - g 71 -4.8 -4.4874 | overlap 263266 263265 TGGAAAAAGCTAAAA TCATTT TAGA AAATGA AAAGCAAAAAGAAAA HPP12_0255 262959 - 263387 + | hypothetical protein TERM 244 263637 - 263625 - g 77 -4.9 -4.93595 | AGAAAAACTGAAAAA TTTAG CGG CTAAA GAAGAAGCCTTTAAA HPP12_0256 263380 - 264051 + | secreted protein TERM 245 264330 - 264316 - g 70 -2.8 -5.03314 | opp_overlap 264322 GCTACGCGCAAAAAA GCCCTT TCC AAAAGC TATGGATATTGTTTG TERM 246 264462 - 264449 - g 83 -3.1 -5.60993 | gap 1 CGGTTTAGAAAAAAA CGCGCT AGA AGC-CG GGCTGTTAAAAGGGG HPP12_0257 264048 - 265103 + | zinc metalloprotease TERM 247 265712 - 265700 - g 79 -3.3 -5.39721 | opp_overlap 265700, overlap 265693 TCATGACACAAAAAA CGCTT TTG ATGCG ATTGTAGTGGCTAGG xseA 265116 - 266378 + | exonuclease VII large subunit mod-1 267569 - 266397 - | type III R-M system methyltransferase TERM 248 267083 - 267098 + g 76 -3.2 -5.27335 | opp_overlap 267077 CTTTTAAAACAAGTT GGGC TTGAGTTT GCCC TTTTTGTTTAAAAAC TERM 249 267128 - 267146 + g 74 -9 -3.61178 | overlap 267145 CATTCTTAATCGTTC GCATTAAA TCT TTTAATGC TTTAGCATAAATGGG HPP12_0260 267804 - 267562 - | hypothetical protein HPP12_0261 267921 - 268562 + | type II R-M system restriction endonuclease TERM 250 268716 - 268728 + G 70 -2.7 -5.06735 | opp_overlap 268716, overlap 268716 268710 CGAGCGTTTTAGAGA CTTTT GAA AAAGG TTTTTATGATTTGTG hpaim 268652 - 269410 + | type II R-M system methyltransferase TERM 251 271224 - 271208 - g 90 -8.7 -5.06414 | overlap 271221 GTGGGGCAAGAAAAA GCGATCA AAG CGATCGC TAAAGCGATTAAAAG clpB 269483 - 272053 + | ATP-dependent protease binding subunit TERM 252 272408 - 272419 + G 76 -4.4 -5.01042 | ATTATATCGCTGGGG GGAT TGTG ATCC TTTTTGGTTTGCATT ccdA 272110 - 272829 + | cytochrome C-type biogenesis protein CcdA TERM 253 273341 - 273353 + G 76 -6.9 -4.41241 | opp_overlap 273328 273339 273341, overlap 273328 ATGCGTTTGAAAACA CGCGC TTG GTGCG TTTTATGGAAGTTTC pyrC-1 272839 - 273975 + | dihydroorotase HPP12_0266 273960 - 275189 + | chlorohydrolase HPP12_0267 275250 - 275492 + | hypothetical protein TERM 254 275723 - 275706 - g 79 -3.4 -5.46698 | opp_overlap 275706 275711, overlap 275707 275720 GCTAAAATCAAAAAA CCCAAC GCCAAA ATTGGG GTTTGTGGGTGCACC HPP12_0268 275502 - 276815 + | 2-methylthioadenine synthetase HPP12_0269 276854 - 277507 + | hypothetical protein TERM 255 277894 - 277906 + G 87 -3.4 -5.79595 | opp_overlap 277874 277894 TCAAGCGTTTTAAAA TCCA GGATG TGGA TTTTTTGTTTTCGCC TERM 256 277984 - 278000 + G 76 -2.3 -5.47846 | overlap 277986 CGTTGTTGTATTTGC TTTTGGA GCG TTCAAGA TTTTATTTTTTGATT HPP12_0270 277500 - 278483 + | hypothetical protein TERM 257 278850 - 278864 + G 80 -2.2 -5.63517 | opp_overlap 278843, overlap 278846 TGGTAAAACCCCTTC TAAAGA AGC TTTTTA TTTTTTGTTTCAAAA HPP12_0271 278473 - 279006 + | hypothetical protein TERM 258 279199 - 279184 - g 79 -3.2 -5.51165 | AAAATCGTAAAAAAA GCGTTT TAGA ATACGC GCAAAGGCATTTTGA HPP12_0272 279003 - 279542 + | hypothetical protein HPP12_0273 279558 - 279956 + | hypothetical protein TERM 259 280023 - 280035 + G 70 -3.4 -4.91573 | AAGAAAAGATTTTTA GCAA ATATA TTGC TTTTTAGTCTGTTTT HPP12_0274 279993 - 281288 + | ATP-dependent nuclease TERM 260 281336 - 281313 - g 73 -2.3 -5.35222 | opp_overlap 281313, overlap 281306 281302 AAAATTTACAAAAAA GCTTGGCCT TAAAAG AGGGCATGC TTTCTTATGAAATGC TERM 261 281512 - 281524 + G 71 -6.9 -4.06903 | ATTATACGAAATAGG CGCGC CAA GCGTG TTTGATTTAGAAGTT HPP12_0275 281276 - 281833 + | indole-3-glycerol phosphate synthase HPP12_0276 281890 - 282144 + | ferredoxin HPP12_0277 282154 - 283608 + | guanosine pentaphosphate phosphohydrolase TERM 262 284186 - 284162 - g 70 -5.9 -4.43911 | opp_overlap 284167 284181, overlap 284166 AAATTTGAATCAAAA TAAACCAAAAA TCC TTTTTGTTTTA GAAACTTCTAAAATC HPP12_0278 283605 - 284627 + | lipopolysaccharide heptosyltransferase-1 HPP12_0279 284624 - 285610 + | lipid A biosynthesis acyltransferase TERM 263 285862 - 285888 + T 73 -4.5 -4.8543 | gap 1 GTATTTTTTACATTT TACCACTCAATG CGAA CAA-GAGTGGTA TTTTTCTAAAAATTC tgt 286983 - 285868 - | tRNA-guanine transglycosylase TERM 264 285986 - 285974 - G 76 -3.4 -5.27938 | AGCTCTAAATAAAAA TGCA AATTG TGCA AGCTGGCTAAACGAG TERM 265 287846 - 287834 - g 73 -7.7 -3.83324 | opp_overlap 287834 GCACAAACATTTAAA GAGCT ACA AGCTC TACATTCAGGTTTTA TERM 266 288136 - 288159 + G 70 -3.2 -4.86133 | opp_overlap 288140, overlap 288140 ATGAAAGCTTGGATA TTAATGAAGA CATG TCTTCAGTGA TTTTTGATGTGTCTA HPP12_0281 287040 - 288476 + | hypothetical protein TERM 267 288979 - 288965 - g 73 -5.7 -4.57073 | opp_overlap 288964, overlap 288967 TAGCTTTTTTAAAAA CCCTT GAAAA AAGGG AATTTCAAGCAGGGG aroB 288481 - 289512 + | 3-dehydroquinate synthase TERM 268 289880 - 289896 + G 71 -5.1 -4.56702 | TATCGCTAACCCTAT TGCGATC ATT GATGGCA TTTCTTTCATTAAAA HPP12_0283 289503 - 291074 + | mechanosensitive ion channel protein TERM 269 291378 - 291399 + G 76 -4.5 -5.1675 | opp_overlap 291389 AAGAAAAGATTAACG CGCTTTT ACAAGAAA AAAAGCG TTTTTTCATAGATGA TERM 270 291713 - 291692 - g 81 -5.9 -5.17353 | AGATTGATTAAAAAA TTAAGCCAG ATTG CTGGATTAA AACGCATAAGGATTG HPP12_0284 291071 - 292327 + | miaB-like tRNA modifying enzyme TERM 271 293060 - 293040 - g 100 -12.7 -5.00616 | GCTGGGGCTAAAAAA GTGCATGAA CTT TTCATGCAC GCTAAAAGGCATGCC TERM 272 293578 - 293553 - g 73 -5.5 -4.62313 | gap 1, overlap 293556 293557 293572 GAAAACCAAAAAGAA TTAGTCGCTTTG TAT CAAAGCG-CGAA AGCCTTGAGCGCGTA ftsH-1 292314 - 293966 + | cell division protein FtsH TERM 273 294253 - 294267 + G 73 -7.1 -4.07568 | AGAAGTGGGCTTGAG CGCTC AATTG GAGCG TTTTAAAAAAGAGGG HPP12_0286 293969 - 294487 + | hypothetical protein HPP12_0287 294500 - 294973 + | hypothetical protein TERM 274 298817 - 298842 + G 79 -5.5 -4.83615 | overlap 298819 GGCGGCAACCCTAAT TTCAGTTTCAA CGCT TTGAATCTGGA TTTTTCTAACAGCTC HPP12_0288 295040 - 303760 + | vacuolating cytotoxin VacA-like protein TERM 275 303854 - 303884 + G 75 -2.6 -5.1925 | overlap 303855 303883 ATAAAACCCCTTTTT ACCTCTATGATTTT GAC AAAATCAAACAGGC TTTTTTGAATTATAA TERM 276 304174 - 304160 - g 90 -8.6 -4.88407 | TTATGGAATTAAAAA CGATTG AAA CAATCG CTCAATCTTTAGGGA lysA 303808 - 305025 + | diaminopimelate decarboxylase HPP12_0290 305030 - 305320 + | chorismate mutase HPP12_0291 305333 - 306205 + | hypothetical protein TERM 277 307094 - 307082 - g 74 -4.7 -4.89393 | opp_overlap 307082 307082 GAAAGTTTAGAAAAA CGCCC TAG GGGGG TGTATTGCGGGGCGA pabB 306206 - 307885 + | para-aminobenzoate PabA-synthetase amiE 308078 - 309097 + | aliphatic amidase flgL 311679 - 309193 - | flagellar-hook associated protein 3 TERM 278 310157 - 310175 + g 78 -3.8 -5.27779 | CTTTCTAATTTTGCC CCTTCTTT ATT GAAGTAGG TTTTTTGGTATTCGC TERM 279 311048 - 311028 - G 70 -2.6 -5.07486 | opp_overlap 311029, overlap 311029 311041 TAGGTTTAATAAAAA CTTCTTCA GGTAA TGAAGAAT GCTCTAAAGCGTCCA rplU 311923 - 312237 + | 50S ribosomal protein L21 rpmA 312251 - 312517 + | 50S ribosomal protein L27 dppA 312634 - 314286 + | periplasmic dipeptide-binding protein dppB 314297 - 315301 + | dipeptide transport system permease protein TERM 280 315906 - 315932 + G 70 -5.9 -4.41047 | gap 1 CCCTAATTGCATTAT CCCTTTGATCGT GCAA ACGA-CAATGGG TTTTGCTTCCACGGT dppC 315301 - 316158 + | dipeptide transport system permease protein dppD 316170 - 317033 + | dipeptide ABC transporter dppF 317030 - 317836 + | dipeptide ABC transporter obgE 317856 - 318938 + | GTP-binding protein obgE HPP12_0303 319120 - 320115 + | hypothetical protein TERM 281 320228 - 320212 - f 70 -3.7 -4.88736 | overlap 320214 CATTATTTACAAAAA GAGTTTA AAA TAAACGC AATTGTATCTCTTGA HPP12_0304 320355 - 320909 + | hypothetical protein TERM 282 321385 - 321400 + G 85 -9 -4.19704 | TATTGGTGAAAGCGG GTAGCG GGTG CGCTAC TTTTGGATCGCCTTC hemL 320919 - 322211 + | glutamate-1-semialdehyde 2,1-aminomutase HPP12_0306 322217 - 322480 + | hypothetical protein HPP12_0307 322496 - 322900 + | hypothetical protein HPP12_0308 322984 - 323868 + | N-carbamoyl-D-amino acid amidohydrolase HPP12_0309 323881 - 324762 + | polysaccharide deacetylase TERM 283 324773 - 324760 - f 85 -4.5 -5.63504 | opp_overlap 324769, overlap 324769 AACCCTAGAAAAAAA TAGCG ATAA CGCCA AAAGATTTTTGGCGT TERM 284 324769 - 324787 + F 95 -11.8 -3.90856 | opp_overlap 324760 324769 AAAAAATAGCGATAA CGCCAAAA GAT TTTTGGCG TTTGATTAAAAGGTT TERM 285 324787 - 324769 - f 90 -11.8 -3.49898 | opp_overlap 324769, overlap 324760 AAAAAATAGCGATAA CGCCAAAA GAT TTTTGGCG TTTGATTAAAAGGTT TERM 286 324926 - 324915 - g 70 -5.8 -4.41494 | TAGCGCTAATGAAAA CGCT AGGG AGCG CAAAAGAGCACGGAT HPP12_0310 324808 - 325167 + | hypothetical protein TERM 287 326079 - 326098 + G 80 -8 -4.38712 | opp_overlap 326072 326078 326079, overlap 326072 GAAAAAATCTTAAAT TCCTTAAA GGGT TTTAAGGA TTTTCTCGGCATCAA HPP12_0311 325167 - 326132 + | ATP/GTP binding protein HPP12_0312 327283 - 326138 - | nitrite extrusion protein HPP12_0313 327546 - 327382 - | hypothetical protein TERM 288 327708 - 327691 - R 76 -4.3 -5.14563 | TCTGTTAGTAAAAAA TTTTAAA AAAG TTTAAAA AAATAAAAGTTCTGT TERM 289 327760 - 327783 + r 80 -6.9 -4.63486 | opp_overlap 327760 327765, overlap 327752 327757 327765 GATTTGATTTTATAA TAAAACTCA TTTTAT TGAGTTTTA TTTTATTAAAGAGAT TERM 290 327765 - 327778 + r 70 -2.4 -5.27476 | opp_overlap 327765 327760, overlap 327757 327760 GATTTTATAATAAAA CTCA TTTTAT TGAG TTTTATTTTATTAAA TERM 291 327964 - 327948 - R 89 -3 -5.94713 | opp_overlap 327962 327962, overlap 327962 327963 ACCCCACAAAAAAAA GAGTTT AAAAG AAACCC CTTAACAAGGGAGTT TERM 292 327976 - 327962 - R 80 -6.4 -4.67651 | opp_overlap 327962 327962, overlap 327948 327963 AGAGTTTAAAAGAAA CCCCTT AAC AAGGGA GTTTAAGAAAAGAGA TERM 293 328145 - 328122 - R 71 -6.7 -4.19879 | overlap 328126 ACAAAAGCCTTAAAA GAAACCCCC AAAAAA GGGAGTTCC ACAAAGGGATTTAAG TERM 294 330558 - 330571 + r 81 -9.5 -3.71848 | opp_overlap 330549 AAAAAGCACTCTTTT GGGGC GTTT GCCCC TTATTAGTGAGAAAG HPP12_0315 331343 - 330588 - | heme iron utilization protein TERM 295 330649 - 330637 - G 70 -7.7 -3.66784 | overlap 330634 TTATCCCCAACATAA GCGAT TTT ATCGC CTAAAATGTCATAAG TERM 296 330754 - 330766 + g 76 -4.7 -5.08824 | ATGGTTTTAATGCCC CCAGC GCC GCCGG TTTTTTCAATGAAAG TERM 297 330899 - 330915 + g 74 -6.5 -4.40561 | opp_overlap 330899, overlap 330897 CTTCTAAAAACATCA CTTCCAC ATT GTGGGGG TTGTTTTTAAGACCG argS 333029 - 331404 - | arginyl-tRNA synthetase TERM 298 331570 - 331585 + g 72 -3.2 -5.00884 | overlap 331572 TCTGAGGCAAGGGTT TTTGCG TATT CGCACA TTTTTTGCAAGCCGT TERM 299 331687 - 331703 + g 71 -7.3 -3.90744 | opp_overlap 331687 331700, overlap 331700 TTTAAATTGGTTAAA GGGGTTT GCA AAACCTC TTCTTTAGAAAAGGG tatA 333271 - 333032 - | sec-independent protein translocase protein gmk 333961 - 333341 - | 5'-guanylate kinase HPP12_0319 335444 - 333954 - | poly E-rich protein TERM 300 335073 - 335106 + g 79 -3.1 -5.40474 | overlap 335073 335071 TGGGTCTAAATTTTG GCTAGGCTCTAGC TCGCTTAT GTTAGAACCAAGC TTTTTTTGAAGGACT TERM 301 335304 - 335318 + g 77 -8.6 -3.90744 | opp_overlap 335304 ATCATCGGCTATCAA GATCCA TTC TGGATC TTCTTTAAGGCACGC HPP12_0320 335587 - 336129 + | membrane bound endonuclease TERM 302 336121 - 336135 + T 71 -6.4 -4.12188 | TTAGGGAGTTGCGTT GGGTTT TAA AAGCCC TTTTAGAAGTGGTAA horC 336902 - 336138 - | outer membrane protein HorC TERM 303 336793 - 336809 + g 79 -8.7 -3.97674 | opp_overlap 336796 AAATTTTTTGTCCAA GAAGGCG CTG CGCTTTC TTCTTTAGCTACTAA flgH 337007 - 337720 + | flagellar basal-body L-ring protein TERM 304 337784 - 337805 + G 72 -3.1 -5.08824 | opp_overlap 337784 337799 GTTCCAGTAAAAGGA TCAAGAATA AAAA TATTATTGA TTTTTTCAATAAACC TERM 305 337994 - 337972 - g 71 -7 -3.9712 | overlap 337987 TTAGCGGATGATAAA GCCACGACTT TAG AAGTGATGGC CTATCACATGGAAGA TERM 306 338090 - 338076 - g 74 -5 -4.77567 | opp_overlap 338076, overlap 338071 ATTTTTACAAGAAAA GCATTT AAG AAACGC TTTTGAAACTTTAAA HPP12_0323 337738 - 338427 + | CMP-N-acetylneuraminic acid synthetase HPP12_0324 338418 - 339290 + | CMP-N-acetylneuraminic acid synthetase TERM 307 339466 - 339477 + GT 89 -4.4 -5.63517 | TCTCAAAAATTCGCC TAGC CACC GCTA TTTTTTGTTTAAAGA TERM 308 339560 - 339576 + GT 79 -5.1 -5.02074 | opp_overlap 339574 AAGCATGGGTATTTG GGGATTT ATA AAAACCC TTTTTTGAAAAATAA TERM 309 339594 - 339574 - gT 88 -6.9 -4.87665 | opp_overlap 339560 GGGGATTTATAAAAA CCCTTTTTT GAA AAATAAGGG AGAAACGATTTTAAA lpxK 340700 - 339762 - | tetraacyldisaccharide-1-P-4-kinase flaG-1 339287 - 339829 + | flagellar biosynthesis protein G nadE 341479 - 340697 - | NH(3)-dependent NAD+ synthetase TERM 310 341396 - 341410 + g 85 -2.8 -5.81032 | opp_overlap 341396 341398, overlap 341398 ACTCAGCCCGTAAAC GACTTT TTT AAAGCC TTTTTTTTGAACTTC TERM 311 341454 - 341439 - G 70 -3.2 -5.00616 | opp_overlap 341439 TCTTTTTCTAAAAAA TCGCAT AAAT AAGCGA TGAGTTTTTGGTAAT TERM 312 342574 - 342563 - H 71 -3 -5.10497 | AACGCATGCAAAAAA TCTT AAAA AAGA TTCAAAACGGTGCAT TERM 313 342983 - 342994 + G 70 -3 -5.0133 | opp_overlap 342983 342989 CACGGATAAAAAGAC GAAA AACC TTTC TTTTTTAGCGGCCTC TERM 314 343020 - 342989 - g 70 -3 -5.02231 | opp_overlap 342983, overlap 342983 TAAAAAGACGAAAAA CCTTTCTTTTTTAG CGGC CTCACAAAGCAAGG ATAAAAATATTTTAG minD 342744 - 343550 + | MinD cell division inhibitor protein TERM 315 343591 - 343577 - g 79 -5.6 -4.85782 | overlap 343581 TTTTTTAAAAACAAA GGGAGC GCG GCTACC GCAACAGATAGATTG minE 343547 - 343780 + | cell division topological specificity factor TERM 316 344278 - 344262 - g 73 -7.9 -3.92641 | AAGCGGATTTACAAA GCGGCTC TAT GAGCAGC GCGAGATTAGCCCAA dprA 343787 - 344587 + | DNA processing protein HPP12_0331 344584 - 344988 + | holliday junction resolvase TERM 317 345627 - 345613 - g 74 -4.3 -4.9218 | opp_overlap 345613 CAGGGAGTAGAAAAA GACTT AATAA AAGTC GCTTATTTTTACACT hcpH 345121 - 345888 + | cysteine-rich protein H HPP12_0333 346075 - 346413 + | hypothetical protein HPP12_0334 346397 - 346957 + | hypothetical protein HPP12_0335 346987 - 347388 + | lysozyme-like protein TERM 318 347588 - 347578 - g 77 -8.2 -4.26076 | CTATTTTGATGAAAA CCCC TAA GGGG CGAGAGATTTTGAAA HPP12_0336 347376 - 347642 + | hypothetical protein TERM 319 347981 - 347992 + F 74 -3 -5.22006 | TTTGGTTGCTCATAG TCAA TATT TTGA TTTTTATTCTCATGC HPP12_0337 348032 - 348328 + | hypothetical protein HPP12_0338 348477 - 349109 + | hypothetical protein HPP12_0339 349093 - 349287 + | hypothetical protein HPP12_0340 349463 - 350266 + | hypothetical protein HPP12_0341 351177 - 350284 - | pseudouridine synthase D recJ 352727 - 351177 - | single-stranded-DNA-specific exonuclease TERM 320 351999 - 352013 + g 74 -6.4 -4.386 | opp_overlap 351995, overlap 351972 AAAAGAAATATCGCT CGCTTT TAA AGAGCG TTTTCTAAAAACTTC TERM 321 352234 - 352224 - G 72 -3.2 -5.03227 | ATAGCACAAATAAAA CGCT ACC AACG CCCCACACACTTCCT TERM 322 352432 - 352442 + g 70 -2.6 -5.03314 | overlap 352431 AAAGGGGCGTGGTGT TTTT CTA AAAA TTTTTTAGAAATCCC pyrG 354352 - 352736 - | ctp synthetase TERM 323 353064 - 353077 + g 70 -3.1 -4.86773 | overlap 353072 CCTAAAGGCGAATTA TAGGT ACGC ACCTG TTTTTGGTGGTTTTG TERM 324 355030 - 355041 + G 78 -7.2 -4.43208 | GCACTAATTTCCCTA GCGC TATC GCGC TTTCTTTAACGCTAT HPP12_0344 354612 - 355274 + | hypothetical protein TERM 325 356237 - 356227 - g 100 -3.2 -6.17268 | TTAGAAGAAAAAAAA GAAG GCG CTCC TAAAAAACAAGTCGG fliF 355318 - 357021 + | flagellar basal-body M-ring protein fliG 357039 - 358070 + | flagellar motor switch protein TERM 326 358677 - 358691 + G 70 -8.6 -3.3334 | opp_overlap 358674 358677 CCCTTATTTAAACGA GCGTTT GCA AAACGC TTCTAAAATCAAATT fliH 358057 - 358833 + | flagellar export protein TERM 327 359510 - 359522 + G 72 -3.3 -5.03145 | ATCTTTTAAGCTCAT CACCC CGG GCGTG TTTTTTGAAGAATTA TERM 328 359762 - 359746 - g 77 -6.5 -4.5366 | overlap 359748 CTAAAAAATCCAAAA GTGCGAT TCT ATCGCCC ACTGAAGCGTATTCT dxs 358836 - 360686 + | 1-deoxyxylulose-5-phosphate synthase TERM 329 360705 - 360694 - g 70 -3.6 -4.98061 | AGAGATGAAAGAAAA GACG CCTA CGCC AATGAAAAATATCCG lepA 360683 - 362497 + | GTP-binding membrane protein TERM 330 362551 - 362529 - f 85 -8.6 -4.09656 | opp_overlap 362547, overlap 362521 GGCAAAACATAAGAA CTATGAAATT TTA AATCTCATAG GCTATGCTTTGGCAA HPP12_0350 362555 - 363268 + | hypothetical protein HPP12_0351 363211 - 363507 + | hypothetical protein flgG-1 364996 - 364187 - | flagellar basal-body rod protein kgtP 366336 - 365050 - | alpha-ketoglutarate permease TERM 331 366139 - 366118 - G 73 -2.1 -5.18357 | overlap 366122 CAATTTACCAAAAAA CAAACTCCC CAAA GGGCGCATG AAAAACCCTAGCATG TERM 332 366135 - 366122 - G 74 -3.7 -5.0917 | overlap 366118 TTACCAAAAAACAAA CTCCC CAAA GGGCG CATGAAAAACCCTAG TERM 333 366540 - 366524 - R 90 -8 -5.00765 | AATCAATCATAAAAA GCTTGC GAAAA GCAAGC GGTAACTTTTTAAAA ftsK 369187 - 366596 - | cell division protein FtsK TERM 334 368498 - 368520 + g 75 -10 -3.21924 | overlap 368496 GACTAAGCCTTCTTG CGGCTTTAAA TCG TTTAAAGTCG TGTTATAGGGGGTAG HPP12_0355 371520 - 369184 - | hypothetical protein TERM 335 369225 - 369239 + g 86 -7.2 -5.03314 | opp_overlap 369224 369225 AGCAATATTCACAAT CTTTAG CCT CTAAAG TTTTTTCAAAATCAA TERM 336 369614 - 369632 + g 85 -6.8 -5.0916 | GTTTCAAAGCTTTTT TCAAGATC AAG GATTTTGA TTTTTGTATTAAAGC TERM 337 371535 - 371573 + r 82 -7.5 -4.58685 | TGCGTTGAGTAACCT TTTAGCTTGAGCGGTGA TGTTT TCAACGCTGAAGCCAAA TTTTTCAAAGAGTTT tktA 373442 - 371517 - | transketolase A TERM 338 371956 - 371944 - G 76 -3.3 -5.18371 | opp_overlap 371950 371953, overlap 371945 371946 CGCGATAAAATAAAA GCGCT AGG AGCGT TCAAACTTAACGCTA TERM 339 372554 - 372567 + g 74 -3.9 -5.06451 | TAACTTTCACTTCTT CAAAA TGCA TTTTG TTTTTTGGACTAATC HPP12_0357 374331 - 373489 - | bifunctional riboflavin kinase / FMN adenylyltransferase TERM 340 374253 - 374241 - GR 77 -6.2 -4.59853 | TTAATTCTTTAAAAA GGGC TTGAT GCCC TAGATGCAAGCCATC HPP12_0358 375004 - 374297 - | hemolysin TERM 341 374362 - 374384 + gr 73 -4.2 -4.89063 | overlap 374350 TCACTAAGCTTTCTT GGATCTTTAA GAT TTGAAAATCC TTTGTTTTTAAATGG HPP12_0359 375519 - 375004 - | hypothetical protein TERM 342 375497 - 375487 - G 79 -3.2 -5.47964 | ACAAAAGAATAAAAA CACC AGA AGTG TTGAGAGATTTTTCA TERM 343 375911 - 375932 + G 82 -8.7 -4.27316 | opp_overlap 375910 ACGCTATCATCACAC GGCATGCTT TTTC AAGCACGCC TTTTAAATTAGCCGA pyrB 375586 - 376509 + | aspartate transcarbamoylase TERM 344 376547 - 376518 - f 73 -7.4 -3.80014 | opp_overlap 376527 376536 376540, overlap 376519 AGACTGATCATTAAA CTTAAAAAATGC TTTTTG GCATTTTTTAAA AAAAATGAGTTTGAT TERM 345 377545 - 377560 + G 70 -2.5 -5.15117 | CTTATGAAAGAAAAG GGGTT AGCGTC AGCCC TTTTTTCCAATTTTC hofB 376764 - 378203 + | outer membrane protein HofB TERM 346 378335 - 378357 + G 75 -2.8 -5.33124 | opp_overlap 378336, overlap 378336 TAAATACCTTAAAGA GCATTATAAA AGT TTTATAGTGG TTTTATTTTCTTCTT TERM 347 379541 - 379553 + G 70 -5.5 -4.32857 | AAAGATTAGCGTTGT CACTC AAA GGGTG TTTATCTTTAACGGG msbA 378294 - 379949 + | multidrug resistance protein HPP12_0363 379943 - 380566 + | hypothetical protein TERM 348 380706 - 380717 + G 72 -3.6 -5.1615 | TTTTAAAATTGTTCG CGCT TCTT GGCG TTTTTTCAATATTAG HPP12_0364 380570 - 381139 + | integral membrane protein TERM 349 382155 - 382133 - g 86 -7.2 -5.03314 | overlap 382135 GTTATTGTTAAAAAA TATTATTGAT TTT ATCAATAACA ATAAAGATGGTAATT TERM 350 382153 - 382135 - g 76 -7.6 -4.14633 | overlap 382133 TATTGTTAAAAAATA TTATTGAT TTT ATCAATAA CAATAAAGATGGTAA HPP12_0365 381250 - 382394 + | hypothetical protein HPP12_0366 382387 - 383088 + | hypothetical protein TERM 351 383933 - 383947 + G 77 -4.9 -4.87786 | CCATCACGGCCTTAA GCGTG TTTAT CGCGC TTTTTATCGGGTTGA nixA 383146 - 384141 + | high-affinity nickel transport protein HPP12_0368 384660 - 384145 - | hypothetical protein TERM 352 384369 - 384345 - G 73 -2.2 -5.2166 | gap 1, overlap 384346 384347 CAATAATGGAAAAAA CTTCATCATTG ATTG CAATGTTGA-G CTGGGTGTCAAACAA TERM 353 384735 - 384745 + H 79 -5.4 -5.13473 | opp_overlap 384734 384735, overlap 384736 AACTTTAAAAAACAC CCTT AAA AAGG TTTTTTAGGTATAAT TERM 354 384891 - 384872 - g 74 -4.2 -5.06585 | overlap 384873 GAAACGATAGAAAAA GCCCCTAC AAAT GTAGAGGA TAGGGACAAATCCCC TERM 355 384890 - 384873 - g 70 -7.7 -3.62324 | overlap 384872 AAACGATAGAAAAAG CCCCTAC AAAT GTAGAGG ATAGGGACAAATCCC HPP12_0369 384797 - 386113 + | secreted protein HPP12_0370 386536 - 386321 - | hypothetical protein copP 386970 - 386770 - | copper ion binding protein copA 389196 - 386971 - | copper-transporting ATPase TERM 356 387747 - 387759 + g 76 -9.1 -3.68261 | overlap 387753 TCATTTCTTTTAAGG GAGCG TTA CGCTC TTTGGCGTATTCTAC TERM 357 389203 - 389221 + r 77 -6.2 -4.66833 | TTCTTTCATGCACTC TTATTTTT ATT AAAAATAA TTTTTACCATTAAAA pssA 389906 - 389193 - | phosphatidylserine synthase TERM 358 389681 - 389665 - G 72 -8.7 -3.50721 | overlap 389666 AAGTAAGTAATAAGA CTTGGGG CTA CCCCAAA AGCGACTACATCAGC TERM 359 389680 - 389666 - G 72 -10 -2.69348 | overlap 389665 AGTAAGTAATAAGAC TTGGGG CTA CCCCAA AAGCGACTACATCAG HPP12_0374 390150 - 389896 - | hypothetical protein ftsH-2 392051 - 390153 - | cell division protein FtsH prmA 393058 - 392069 - | ribosomal protein L11 methyltransferase TERM 360 393009 - 392989 - G 71 -6.9 -4.07568 | overlap 392993 GCGTGGTGTCTAAAA GAAAGCTCT CAA AAAGCTCTC GCTTCTTAGGGAAGA cheY 393433 - 393059 - | chemotaxis protein horD 393723 - 394325 + | outer membrane protein HorD HPP12_0379 394896 - 394489 - | hypothetical protein HPP12_0380 395141 - 394899 - | hypothetical protein gidB 395671 - 395135 - | glucose inhibited division protein B queA 396705 - 395668 - | S-adenosylmethionine:tRNA ribosyltransferase-isomerase TERM 361 396326 - 396308 - G 71 -3.8 -4.84359 | opp_overlap 396309, overlap 396309 TGATTGTCATAAAAA GCGATCAA GCG TTGACCGT TATGGAGTAATTCCA tatB 397467 - 396706 - | sec-independent protein translocase subunit TERM 362 396927 - 396911 - G 75 -9.5 -3.32405 | opp_overlap 396911, overlap 396901 396909 AAAATCACTACAATA GCGTATT TGA AATACGC TTTCAAACTCACATC TERM 363 396911 - 396927 + g 77 -9.5 -3.57462 | opp_overlap 396901 396909 396911 AAAATCACTACAATA GCGTATT TGA AATACGC TTTCAAACTCACATC tatC 397942 - 397460 - | sec-independent protein translocase subunit ruvB 399020 - 398010 - | holliday junction DNA helicase TERM 364 398731 - 398746 + g 79 -3.2 -5.39721 | overlap 398735 398740 AAATTCGTCAAAATG GCGG CCAAATCA CCGC TTTTTTCTATCATGG TERM 365 399046 - 399057 + r 74 -5.8 -4.63527 | CTTTCTAACTCGTTA GGGA AGTT TCCC TTTTTCACATCATCA panB 399833 - 399021 - | 3-methyl-2-oxobutanoate hydroxymethyltransferase TERM 366 399206 - 399226 + g 79 -5.4 -4.86862 | CGCAATCCTTGCCGC TCCCTATG CCGAT CGTGGGGA TTTTGATTTTTTGCG HPP12_0387 399982 - 400704 + | hypothetical protein HPP12_0388 400694 - 401551 + | hypothetical protein TERM 367 401676 - 401666 - g 75 -2.6 -5.2422 | AATTAGACGAAAAAA TAAA CCA TTTA AAGCAACAGCTTACC TERM 368 402070 - 402084 + G 86 -2.1 -5.9362 | gap 1, overlap 402070 GAGAACGCGCTCAAG C-AGCC TGTA GGCTCG TTTTTTTATGTTTTA HPP12_0389 401560 - 402504 + | hypothetical protein HPP12_0390 402514 - 403836 + | metalloendopeptidase related membrane protein TERM 369 404342 - 404329 - g 70 -2.5 -5.07652 | TTTTTCAAAATAAAA TTTTA TCTT TAAAA GAGGTTGAACGGCTT HPP12_0391 403839 - 404426 + | septum site-directing protein lpxC 404423 - 405310 + | UDP-3-O-acyl N-acetylglucosamine deacetylase TERM 370 405307 - 405327 + F 71 -3.3 -5.09426 | overlap 405311 405312 GCAAAAGGCTTTCGC TTAATCCTA AAT TAGGGTTTA TTTTTTGGAATTGGA TERM 371 405311 - 405323 + F 76 -4.1 -5.05153 | overlap 405307 405312 AAGGCTTTCGCTTAA TCCTA AAT TAGGG TTTATTTTTTGGAAT HPP12_0393 405332 - 405805 + | hypothetical protein thrB 405859 - 406740 + | homoserine kinase HPP12_0395 406712 - 406981 + | hypothetical protein TERM 372 408485 - 408463 - g 77 -4.8 -4.89605 | overlap 408464 GAAAAAAATAACAAA TGGGTGTC TTTCATT GACACCCC AGGGCATGAAGCCTT TERM 373 408484 - 408464 - g 72 -8.3 -3.50103 | overlap 408463 AAAAAAATAACAAAT GGGTGTC TTTCATT GACACCC CAGGGCATGAAGCCT TERM 374 409096 - 409086 - g 70 -5.4 -4.39828 | AATAGGGGTAGAAAA CGAT TCC ATCG CACGCTTGCAAGCTC infB 406978 - 409821 + | translation initiation factor If-2 TERM 375 410062 - 410076 + G 73 -7.2 -4.10429 | opp_overlap 410058, overlap 410074 GGTGGTTTAAATGCC CAAAAC TCA GTTTTG TTTTAGACAATAGTT rbfA 409821 - 410156 + | ribosome-binding factor A HPP12_0398 410149 - 410589 + | hypothetical protein TERM 376 410685 - 410674 - T 81 -5.8 -5.0133 | opp_overlap 410674 410666 TATTTGGTTAAAAAA CGCT AAAA AGCG TTTTTGAGATTTCAC TERM 377 410674 - 410685 + T 77 -5.8 -4.70879 | opp_overlap 410674, overlap 410666 TATTTGGTTAAAAAA CGCT AAAA AGCG TTTTTGAGATTTCAC HPP12_0399 412685 - 410697 - | acetyl-coa synthetase TERM 378 411287 - 411297 + g 72 -4.6 -4.72007 | TGCATAAAAACCCTT GCTC TCC GGGC TTTGTTTTGGTGCCG TERM 379 413019 - 413029 + G 76 -2.4 -5.49579 | opp_overlap 413019 GTCCTTTTGAGCATA GGCG AGG CGGC TTTTGTTTTTTATAG TERM 380 413770 - 413782 + G 73 -7.7 -3.8901 | opp_overlap 413769 413770 GAAGCCTCAAAGAAG TCCAC TCT GTGGA TTTAGTGCTTTCAGG TERM 381 413914 - 413881 - g 93 -13.9 -2.99449 | opp_overlap 413877, overlap 413876 GTTTATACAAGCACA GCCCCACCACTCAAA TTTA TGTGAGCAGTGGGGC AGGGTATTGGGGGAT HPP12_0400 412884 - 413996 + | phosphodiesterase domain-containing protein TERM 382 414980 - 414957 - g 76 -4.6 -5.03747 | gap 1, opp_overlap 414964, overlap 414966 AAATCCGCCAAAAAA TGGATAAACCC TTG GGGATT-TCCA CGGTTGAAACCGTGA HPP12_0401 414374 - 415045 + | transcriptional regulator TERM 383 415326 - 415298 - T 75 -4.7 -4.91873 | opp_overlap 415304, overlap 415299 415300 415304 GATATTAACCAAAAA CTTAAAGAATGCT AAA AACATTCTTTACA ATCAAATGATTAAAA TERM 384 415324 - 415300 - T 72 -9.5 -2.71339 | opp_overlap 415304, overlap 415299 415298 415304 TATTAACCAAAAACT TAAAGAATGCT AAA AACATTCTTTA CAATCAAATGATTAA TERM 385 415502 - 415529 + T 79 -4.2 -5.30199 | opp_overlap 415509, overlap 415509 AAATTTTTAAACCTT CCAAAAAGAGTT TTTA AACTCTTATTAG TTTTTGTTAGTTTTT TERM 386 415522 - 415509 - T 71 -5.3 -4.60924 | opp_overlap 415502 415509 TAAACCTTCCAAAAA GAGTT TTTA AACTC TTATTAGTTTTTGTT HPP12_0402 416604 - 415561 - | hypothetical protein TERM 387 416552 - 416539 - G 74 -3.9 -5.04385 | GATATTCTTAAAAAA TTGTT TTGA AACAA GCTGGCATGCATAGC flhA 418836 - 416635 - | flagellar biosynthesis protein rpsO 418976 - 419248 + | 30S ribosomal protein S15 HPP12_0405 419278 - 420567 + | hypothetical protein HPP12_0406 420696 - 421199 + | 3-dehydroquinase type II TERM 388 422202 - 422223 + G 76 -4.3 -5.0538 | opp_overlap 422202, overlap 422203 GGTGTTTTCCATAGA GCCTGGGAT TTAT ATCCCTGGA TTTTTTGGGGTGCGC TERM 389 422203 - 422222 + G 70 -7.8 -3.62746 | opp_overlap 422202, overlap 422202 GTGTTTTCCATAGAG CCTGGGAT TTAT ATCCCTGG ATTTTTTGGGGTGCG HPP12_0407 421213 - 422286 + | proline peptidase TERM 390 422316 - 422341 + G 72 -4.7 -4.83169 | overlap 422320 ACTAACCGCTTTTTC CCTAGCCTTTT TAAA AAAAGGCTTGA TTTTTCTAACAGGGT TERM 391 422320 - 422337 + G 77 -8.5 -3.88001 | overlap 422316 ACCGCTTTTTCCCTA GCCTTTT TAAA AAAAGGC TTGATTTTTCTAACA folK 422283 - 422774 + | 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokina se TERM 392 423391 - 423375 - g 74 -6.5 -4.42464 | opp_overlap 423374 AACTGGCCAAACAAA GCGGGAT GAA ATCCAGC CATTTAGATGAAATC flhF 422771 - 424147 + | GTP-binding flagellar biosynthesis protein HPP12_0410 424144 - 425028 + | ATP-binding protein HPP12_0411 425033 - 425347 + | hypothetical protein TERM 393 425812 - 425796 - g 85 -8.7 -4.43669 | ATTGAAAAAATTAAA GAAGCCA AAA CGGCTTC AGATATTTATGCGTT fliA 425325 - 426092 + | alternative transcription initiation factor sigma-F fliM 426085 - 427149 + | flagellar motor switch protein TERM 394 427161 - 427171 + G 70 -2.6 -5.06414 | opp_overlap 427161 GTGAGAAATGCAAGA TTTT ATT AAAA TTTTTATTCAAGAGG fliY 427153 - 428016 + | FliY protein TERM 395 428285 - 428270 - g 73 -7.6 -4.0683 | opp_overlap 428273 428284, overlap 428284 AAAGAAAGCGAGAAA GGCTTT TTTG AAAGCC ACAAAAAATATGTGG HPP12_0415 428045 - 428581 + | hypothetical protein TERM 396 428634 - 428657 + G 80 -4.6 -5.28176 | gap 1, overlap 428636 AGGGGCTGTAGAGTT GCCTGGAGTTT ATC AAAC-CCAGCC TTTTTTATACATGAA HPP12_0416 428578 - 429075 + | hypothetical protein fur 429547 - 429095 - | ferric uptake regulation protein rarA 430882 - 429707 - | recombination factor protein TERM 397 429754 - 429739 - G 76 -7.6 -4.15453 | opp_overlap 429737 CAAGCCATTCTAAAA GGGTTT TTTC AAACCC TATGCCTTGAGAAGA TERM 398 430101 - 430084 - G 82 -7.7 -4.56597 | opp_overlap 430084 CTTCGCTCGCAAAAA TCACCAG CCTT CTGGCGA TAAATTCTGGGTTTT hspR 431250 - 430879 - | transcriptional activator of heat-shock proteins HPP12_0420 432126 - 431260 - | CO-chaperone-curved DNA binding protein A TERM 399 431837 - 431809 - G 74 -6.1 -4.37886 | overlap 431811 CGAGTTTTGAGAAAA TCTTTGCGAAAAG CCT CCTTTCCCAAAAA TAGAGCTTAAAATAT TERM 400 432459 - 432440 - g 93 -7.8 -5.40474 | opp_overlap 432439 432440, overlap 432427 AGGGGCGCAAAAAAA CCCTCACA GCTA TGTGGGGG CTTTAGCGCGCCTTG TERM 401 432440 - 432459 + G 72 -10 -2.72461 | opp_overlap 432440 432427, overlap 432439 AGGGGCGCAAAAAAA CCCTCACA GCTA TGTGGGGG CTTTAGCGCGCCTTG HPP12_0421 432294 - 433544 + | hypothetical protein HPP12_0422 434488 - 433652 - | DNA-polymerase I-like 5'-3' exonuclease TERM 402 433684 - 433701 + g 76 -2.1 -5.44119 | overlap 433685 AATCAGGTTTTTGTG TTTTTTT AGGG AAAAAAG TTTTTTTAAACTCAG TERM 403 433712 - 433701 - G 70 -3 -5.08824 | TTTTTAGGGAAAAAA GTTT TTTT AAAC TCAGGTTCCCATAGT TERM 404 433992 - 433974 - G 84 -2.4 -5.71638 | overlap 433966 TAATAAGCAAAAAAA TGAGCC TCTTTTT GACTCA CATTAAAAAAAGCGT TERM 405 434670 - 434696 + r 100 -13.2 -4.46212 | overlap 434670 TTTAGCTCTTTTGAT TGCAAAAATGCT TTT GGCATTTTTGCA TTTTATGATCAAACG TERM 406 434670 - 434688 + r 73 -4.6 -4.89729 | overlap 434670 TTTAGCTCTTTTGAT TGCAAAAA TGC TTTTGGCA TTTTTGCATTTTATG HPP12_0423 435639 - 434743 - | two component response regulator TERM 407 435695 - 435680 - R 73 -9 -3.28791 | AGTTTTTGCTTATAA CGCATG CTCA CATGCG CTTGGACTAACAGCC HPP12_0424 436881 - 435661 - | bifunctional 2-C-methyl-D-erythritol-4-phosphate cytidyltransferase / 2-C-methyl-D-erythritol-2,4-cyclodiphosphate synthase TERM 408 436793 - 436767 - G 73 -5.9 -4.63932 | opp_overlap 436774 436789, overlap 436770 CAGCGGCCAATAAAA CAACGCTCGTT TGTTT AACAAGCGTTT CTAGCGTTTCTTTAG TERM 409 436790 - 436770 - G 78 -7.6 -4.43307 | opp_overlap 436774 436789, overlap 436767 CGGCCAATAAAACAA CGCTCGTT TGTTT AACAAGCG TTTCTAGCGTTTCTT TERM 410 436774 - 436790 + g 73 -7.3 -3.96893 | opp_overlap 436770 436767, overlap 436789 CAATAAAACAACGCT CGTTTGT TTA ACAAGCG TTTCTAGCGTTTCTT HPP12_0425 438333 - 436903 - | serine protease TERM 411 437204 - 437214 + g 82 -4 -5.4756 | GCGCCGTTTTGAGCA GAAA TGG TTTC TTTTTTGTTAGGGTT HPP12_0426 439820 - 438378 - | amino acid permease TERM 412 439352 - 439338 - G 78 -4.2 -5.28942 | overlap 439339 CAGGCTAAAGAAAAA CTCGCC CTC GGCAAA AATTTTAACCGAAAA pgsA 440636 - 440034 - | phosphatidylglycerophosphate synthase HPP12_0428 441178 - 440570 - | hypothetical protein HPP12_0429 441976 - 441188 - | 7 alpha-hydroxysteroid dehydrogenase TERM 413 441282 - 441267 - G 78 -4 -5.26316 | gap 1, overlap 441270 TCATCGCATAAAAAA TAAGCCG CTC CGGC-TA GATCGTTAGGATTGC TERM 414 441280 - 441270 - G 84 -8.2 -4.72201 | overlap 441267 TCGCATAAAAAATAA GCCG CTC CGGC TAGATCGTTAGGATT TERM 415 441832 - 441848 + g 75 -3 -5.20333 | CATCTTCTATGATTT TGTTGG CTTCT TCAACA TTTTTATTGTAAGTG dapA 442875 - 441973 - | dihydrodipicolinate synthetase HPP12_0431 444224 - 442890 - | zinc protease TERM 416 443670 - 443653 - G 70 -5.5 -4.38154 | ATATCGTCCATAAAA CCAATGG GCGT CCAATGG TAGGGGTGATAGACA TERM 417 443993 - 444006 + g 70 -8.1 -3.6215 | AATGCTCTAACATGT GAGCG ATCC CGCTC TTTCCCATGACTTCG pyrD 445276 - 444221 - | dihydroorotate dehydrogenase ppk 447342 - 445315 - | polyphosphate kinase TERM 418 447611 - 447650 + r 71 -7.4 -3.67305 | gap 1, opp_overlap 447620 447621, overlap 447621 AAAACTTCATTTAAC CCTAAAAGATCGCTTAAAA TTT TTTTTAGCG-TTTTTTGGG TTGATTGTTTCTATA TERM 419 447621 - 447641 + r 88 -6.9 -5.1848 | opp_overlap 447621 447620, overlap 447611 TTAACCCTAAAAGAT CGCTTAAAA TTT TTTTTAGCG TTTTTTGGGTTGATT hsdS-1 449183 - 448002 - | type I R-M system S protein TERM 420 448855 - 448865 + g 82 -4 -5.51402 | opp_overlap 448852 448855 TAATAATACAAATAA TTAG GGT CTAA TTTTTTTAAATCTAT hsdM-1 450807 - 449176 - | type I R-M system M protein TERM 421 449388 - 449408 + g 70 -2.6 -5.07652 | opp_overlap 449387, overlap 449387 449390 CAAAAGAAACCAGAG CGCAAAAA TCCGC TTTTTGGG TTTTATTTTGAAAAG TERM 422 451572 - 451584 + H 77 -9.1 -3.18033 | overlap 451570 CGGATTAAATTGTAA CGCTC TTT GAGCG TGTTAATGGCTTGTG TERM 423 451734 - 451722 - H 71 -7.7 -3.63744 | overlap 451720 TCTTTTTCTAAAATA TTGCG ATC CGCAA ACATGTCTTTGAGAT TERM 424 452245 - 452262 + H 100 -9.9 -4.41087 | opp_overlap 452244 TTAAAATATAATTAT GCGGAAA ATTT TTTCCGC TTTCTGTTTAATTAT HPP12_0437 452423 - 453496 + | integrase/recombinase XercD family HPP12_0438 454261 - 453578 - | hypothetical protein virb6 455632 - 454334 - | VirB6 type IV secretion protein HPP12_0440 455876 - 455598 - | hypothetical protein HPP12_0441 457328 - 455928 - | hypothetical protein TERM 425 456646 - 456658 + g 78 -2.7 -5.41746 | AAAGTCATTTGGCTG TCTAA TAA TTGGA TTTTTTTAGCCGCTT HPP12_0442 457577 - 457332 - | hypothetical protein HPP12_0443 459272 - 457791 - | hypothetical protein TERM 426 458657 - 458667 + g 71 -6.8 -4.1235 | opp_overlap 458656 CTGTATCAATACCAC TGCC CAC GGCA TTATTATTTGAATTA HPP12_0444 460469 - 459405 - | hypothetical protein HPP12_0445 460803 - 460312 - | hypothetical protein TERM 427 460362 - 460373 + g 76 -4.4 -5.13354 | TGCTTTCCAGTTCTT CTTC TTTT GAAG TTTCTTTTTTGTCAA HPP12_0446 461832 - 460810 - | hypothetical protein TERM 428 461631 - 461645 + g 79 -8.6 -4.01137 | opp_overlap 461624, overlap 461624 CGAATTTAGCTTTAA GCAAAG CCT CTTTGC TTTCTGAATTATCTG TERM 429 463708 - 463698 - g 79 -3.2 -5.42259 | GCAGTTTCAAAAAAA TCCC ATA GAGA GCGAGATAGAATACA TERM 430 467281 - 467263 - g 76 -4.6 -5.05153 | ACCCTAAAAAAGAAA TCTTTATC ACT GATGAAGA GCAAAGCAATCTCGC TERM 431 468643 - 468618 - g 78 -2.5 -5.52347 | overlap 468610 468631 468632 AAGAAAAGCAAAAAA GGGCAAGACAA TATC CTTTCTTGCAC CACAGACGCTAGAAA TERM 432 470206 - 470182 - g 70 -3 -5.01732 | gap 1, overlap 470170 470169 470186 AACTCCCTGAAAAAA TCAA-GGAATT AGAA AACTCCATTGA AACCACTCAAGAAAA HPP12_0447 462096 - 470522 + | DNA methylase parA 470785 - 471441 + | chromosome partitioning protein TERM 433 471557 - 471573 + G 77 -9.5 -3.57144 | opp_overlap 471552 471551 AAAAAGACAGGCTAA GCGATTT AGA AAATCGC TTTGAGAATGCCAAC TERM 434 471734 - 471716 - g 76 -3.1 -5.23292 | opp_overlap 471716 TCAGAGAAAATAAAA GCGTGTT TGTTC AAGACGC TATTGTTTTTTATTT HPP12_0449 471523 - 471807 + | hypothetical protein TERM 435 472549 - 472532 - g 72 -3.3 -5.04325 | opp_overlap 472532, overlap 472546 GCTAAATTAGAAAAA GCCGCTC TGAT GAATGGC GTTTTTATAAGCCCT HPP12_0450 471839 - 473017 + | hypothetical protein virD2-1 474955 - 473042 - | relaxase TERM 436 473579 - 473567 - G 70 -2.7 -5.03314 | overlap 473568 GCTATCTTTAAAAAA CTTAG CCA CTAAA AACATATTACTTTTA TERM 437 473863 - 473881 + g 76 -3.2 -5.20216 | overlap 473864 CTAAATCTATAATCT TTTTTTGT GTG GCAAAAAG TTTTTTGGTGGTATA HPP12_0452 475253 - 475567 + | hypothetical protein TERM 438 475805 - 475782 - g 78 -2.5 -5.40004 | overlap 475754 TATGAAATCAAAAAA CAAGAAAAC GAACTT GTTTTATTG CGTCTAGACACTCAT HPP12_0453 475560 - 475841 + | hypothetical protein virD4-1 477832 - 476105 - | VirD4 coupling protein TERM 439 476566 - 476556 - G 79 -3.2 -5.45652 | ATTTCTAATAAAAAA GGCA ATT TACC AAAACGCACAAATTC HPP12_0455 478391 - 477879 - | hypothetical protein HPP12_0456 478682 - 478392 - | hypothetical protein HPP12_0457 479134 - 478679 - | hypothetical protein TERM 440 478726 - 478743 + g 85 -4.1 -5.53991 | opp_overlap 478726 CCCCTTTTAAACAAT GCGCT ACGATGAA AGCGC TTTTTTTGATAGCTA virB11-1 480072 - 479131 - | VirB11 type IV secretion ATPase TERM 441 479625 - 479608 - G 70 -5.6 -4.42287 | overlap 479604 CAAAGAATTAACAAA GCTAGT CTTACC ACTAGC TGTGCCACCACTGAT HPP12_0459 480371 - 480072 - | hypothetical protein HPP12_0460 480631 - 480368 - | hypothetical protein HPP12_0461 480917 - 480624 - | hypothetical protein virB10-1 482252 - 480987 - | VirB10 type IV secretion protein virB9-1 483784 - 482252 - | VirB9 type IV secretion protein virB8-1 484953 - 483784 - | VirB8 type IV secretion protein TERM 442 484544 - 484527 - G 73 -5.6 -4.57569 | opp_overlap 484527 484543 TCACTTCTTCAAAAA GCATTG TGGGGG CAATGC TTTTATCAAAGCCTA TERM 443 484527 - 484544 + g 74 -6.3 -4.3739 | opp_overlap 484527, overlap 484543 TCACTTCTTCAAAAA GCATTGT GGGG GCAATGC TTTTATCAAAGCCTA virB7-1 485073 - 484957 - | VirB7 type IV secretion protein TERM 444 488174 - 488186 + r 91 -4.9 -5.93252 | opp_overlap 488164 488159, overlap 488164 GATGATGGTATGCCC TGATA CCA TATCA TTTTTTCTTTTTGCC TERM 445 488414 - 488396 - R 76 -3.8 -5.30575 | opp_overlap 488398, overlap 488398 488400 GAAAAAGCTAAAAAA CATAGGCA ACA TGCCAATA CTCTCTTGTGTGCTT TERM 446 489081 - 489093 + r 86 -2.7 -5.8187 | TGAATATTTTCTAAT TCATT GGT AGTGA TTTTTTTCTTAAATC virB3-1 489788 - 489522 - | VirB3 type IV secretion protein TERM 447 489614 - 489600 - G 70 -2.9 -5.14965 | overlap 489608 ATCTTCATCAAAAAA TTCTA AAATG TAGAA TACAAACACACAACT virB2-1 490091 - 489789 - | VirB2 type IV secretion protein HPP12_0470 490372 - 490088 - | hypothetical protein HPP12_0471 491611 - 490433 - | hypothetical protein HPP12_0472 491911 - 491618 - | hypothetical protein TERM 448 491808 - 491822 + g 75 -2.9 -5.23765 | overlap 491816 ACTAATTTAGGTAGA TCTTT CACCA AAAGA TTTTTGTATTCTTTC HPP12_0473 492710 - 491931 - | hypothetical protein TERM 449 493720 - 493732 + r 72 -9.1 -2.56095 | overlap 493719 AAATGGTAGGTTAAG GCGGT TTT ACCGC TGCCTTGCGTGTGCC TERM 450 494050 - 494064 + r 73 -7.2 -4.07568 | TGGTTTTGATGGTTT TGATGA TTT TCATCA TTTTCGGGGGGGGGG HPP12_0474 496638 - 494743 - | hypothetical protein HPP12_0475 497431 - 496664 - | hypothetical protein TERM 451 497194 - 497207 + g 82 -3.8 -5.51402 | AAAGCGTTCTTAAGG CGCT ATCCAA AGCG TTTTTTTGAATGTCT HPP12_0476 497791 - 497441 - | integral membrane protein HPP12_0477 499244 - 497757 - | hypothetical protein TERM 452 498345 - 498332 - GR 70 -3.1 -5.00616 | gap 1, opp_overlap 498332, overlap 498335 498341 CTTCTTCGCAAAAAA TGAGCG AAA CGC-CA TTGGCTTTGGCTAGA HPP12_0478 499744 - 499256 - | hypothetical protein TERM 453 499595 - 499580 - G 79 -6.8 -4.64861 | opp_overlap 499580 TCCGGCTAAAACAAA CAGCAC TAAC GTGCCG AATTTTTCATGAATT pepF 501465 - 499729 - | oligoendopeptidase F TERM 454 500502 - 500516 + g 85 -8.6 -4.42788 | CCCAGCCTTCTTTGA TCGCTT TAG AAGCGA TTTTATGAAATTCAG TERM 455 500858 - 500871 + g 74 -5.3 -4.77925 | opp_overlap 500835 CGAGATTTTTCTAAC GCTTT ACTG AAAGC TTTTTGAGATTTTTT TERM 456 501136 - 501148 + g 74 -4.9 -4.75776 | GAAAGCGAGTTGTTT TTTAG CGT CTAAA TTTTTAAATTCAATT kefB 502813 - 501563 - | glutathione-regulated potassium-efflux system protein TERM 457 502494 - 502480 - G 85 -5.7 -5.23016 | AAACAAGGGAAAAAA TGGGT GAAAG ACCCA AAATAAAATACCCCA TERM 458 502530 - 502518 - G 72 -3.3 -5.15634 | TACCCCACTAAAAAA GCGAT CAA AGCGC ATAAAATGACTTGTA horE 503692 - 503132 - | outer membrane protein HorE HPP12_0482 503897 - 503736 - | hypothetical protein TERM 459 504461 - 504440 - g 72 -4.4 -4.72272 | opp_overlap 504440 TGTCGCTACTAAAAA CGCTCAAA TAGGCT TTGGAGCG TTATCCTTGATGGAT modA 503916 - 504656 + | molybdenum ABC transporter ModA TERM 460 504748 - 504759 + G 89 -5.8 -5.46629 | CCACCCTTATTTTAC TCCC TATA GGGA TTTTTTTAGGCTATT TERM 461 504845 - 504860 + G 72 -4.6 -4.6709 | GCCTTTAGTTTTACC CCCAAG CGTG CTAGGG TTTTATCTCCTTTTA TERM 462 505064 - 505080 + G 86 -2.1 -5.9873 | TTATAGCTTGGGTAA GGGGGAA TAT TACACCC TTTTTTTTGTCCTGC modB 504678 - 505352 + | molybdenum ABC transporter ModB TERM 463 505394 - 505373 - g 74 -3.7 -5.08824 | gap 1, opp_overlap 505360 505372 505373, overlap 505360 GCGCGATTTAAAAAA CGCCTTTTAG GAT CTAAG-GGCG CGTTTGATTTGAATA TERM 464 505576 - 505566 - g 95 -2.6 -6.13 | ACACTCAAAAAAAAA TTTT TTT AAAA CCACAACAACGAAAA modD 505349 - 506146 + | molybdenum ABC transporter ModD TERM 465 506268 - 506280 + T 75 -4.9 -4.88288 | AGAGCCAATCTTTTA GTTTT TCA AAAAC TTTTCTATTCTTTTG HPP12_0486 507656 - 506265 - | glutamyl-tRNA synthetase hopJ 507773 - 508882 + | outer membrane protein HopJ TERM 466 509595 - 509607 + GF 76 -3.3 -5.24531 | opp_overlap 509597, overlap 509602 CTCTCAAAGCCTAGA TAGCG CGT CGCTC TTTTTTATAGCGAGT HPP12_0488 508891 - 510528 + | type II R-M system methyltransferase HPP12_0489 510494 - 511336 + | DD-heptosyltransferase typA 511382 - 513181 + | GTP-binding protein of the TypA subfamily HPP12_0491 513187 - 513669 + | type II R-M system methyltransferase HPP12_0492 514711 - 513767 - | catalase like protein hofC 514988 - 516574 + | outer membrane protein HofC TERM 467 516650 - 516681 + G 100 -6.8 -6.11019 | opp_overlap 516656 516657 516660, overlap 516652 TGGGAGTTAGGGTTT TGGAAATTAAGAAA TATT TTTCTTACTTTCTA TTTTTTTTGCTTTTT TERM 468 516652 - 516679 + G 81 -7.2 -4.63519 | opp_overlap 516656 516657 516660, overlap 516650 GGAGTTAGGGTTTTG GAAATTAAGAAA TATT TTTCTTACTTTC TATTTTTTTTGCTTT TERM 469 517463 - 517477 + G 81 -7.1 -4.59773 | TTGTAGGCACTTTCG TGGGG TTTTT CCCCA TTTTTGCCACTCCGG hofD 516601 - 518046 + | outer membrane protein HofD TERM 470 518052 - 518066 + F 73 -4.3 -4.87893 | GATTTACTAGCATTT TATCC TTAAT GGATA TTTTTGATTAGCCTT HPP12_0495 518445 - 521207 + | hypothetical protein HPP12_0496 521220 - 521837 + | hypothetical protein HPP12_0497 521843 - 521977 + | hypothetical protein HPP12_0498 523486 - 522350 - | potassium channel protein TERM 471 523175 - 523165 - G 70 -5.4 -4.42238 | CCACGCTAACTAAAA TAGC CAC GCTA AAGGCAATGATTCCT rpmB 523857 - 523669 - | 50S ribosomal protein L28 HPP12_0500 524793 - 523957 - | flagellar sheath adhesin TERM 472 525077 - 525066 - g 75 -5.8 -4.66833 | opp_overlap 525065 GGCCAAGGCTAAAAA GGCT AACC AGCC CATTTCAAGCTTTGT TERM 473 525867 - 525850 - g 81 -5.5 -5.08011 | AAAACCCGTAAAAAA CGCCTTT TTTT AATGGCG CCTATCCACCATCAT mraY 524923 - 525984 + | phospho-N-acetylmuramoyl-pentapeptide-transferase TERM 474 526693 - 526714 + G 70 -3 -5.06414 | gap 1, opp_overlap 526712, overlap 526693 AAAAATCCCTTCTGA CGC-CCTTT TTTTT AAGGGAGCG TTTTTATTAGACGCG TERM 475 526995 - 526979 - g 77 -8.7 -3.83026 | opp_overlap 526979 526978 GGGGGCGATATTAAA GGGGTCA ATT TAACCCC CCTTTTTGAAGAATT murD 525986 - 527254 + | UDP-N-acetylmuramoylalanine-D-glutamate ligase HPP12_0503 527511 - 527251 - | hypothetical protein ybgC 527902 - 527501 - | thioesterase family protein TERM 476 527757 - 527739 - G 85 -7.4 -5.00616 | GCGGGGGTGAAAAAA TCCGCTTT GAT AGAGCGGA TAACAAACACGCCTT TERM 477 528774 - 528784 + G 76 -3.2 -5.18643 | AGTGTTCACTTATTC CTTG GGG CAGG TTTTCTTTTCCTTAA HPP12_0505 528133 - 529461 + | sodium-and chloride-dependent transporter TERM 478 529542 - 529582 + G 71 -6.2 -4.24984 | gap 1, overlap 529543 529578 GTTTAGGGCATATTT GGCGCTTTCCCTAT-ATGG TAGG TCATAATGGGGGGAGCGCG TTTGTGCTTTTATAT TERM 479 529543 - 529581 + G 73 -9.7 -3.13364 | gap 1, overlap 529542 529578 TTTAGGGCATATTTG GCGCTTTCCCTAT-ATGG TAGG TCATAATGGGGGGAGCGC GTTTGTGCTTTTATA TERM 480 529871 - 529834 - g 80 -10.8 -3.35046 | overlap 529832 TGATTTGCCTAAAGA TTTAGAGCAAGCTAAA ATGCAA TTTAGCATGCTCCAAA ATGGCAGTTTAATCT TERM 481 530358 - 530375 + G 90 -4.1 -6.02919 | gap 1, overlap 530341 CTAAAATGGGAATAA GCG-GGCA GAT TGTCTCGC TTTTTTTCTTTATGG TERM 482 530731 - 530719 - g 70 -7.7 -3.75153 | opp_overlap 530714 TTTCTTTAACGCAAA CGCTT TTA AAGCG TGGCATTTTAGCGTT HPP12_0506 529472 - 530800 + | sodium-and chloride-dependent transporter TERM 483 531455 - 531424 - g 73 -6.6 -4.20367 | opp_overlap 531443, overlap 531442 531443 CCTTTTAATAAAGAA GGTAATCCTGAAAA CCAA TTCCCAGGACAACC TGTGATCGTTAAAGA TERM 484 531519 - 531537 + G 86 -10.2 -4.12738 | TTGTCGTTCGGTGAG CGCGGGGC AAC GCCCTGTG TTTCGTTTGGTGTGG pldA 530815 - 531882 + | outer membrane phospholipase A1 precursor dnaN 531938 - 533062 + | DNA polymerase III beta subunit gyrB 533075 - 535396 + | DNA gyrase subunit B TERM 485 535573 - 535559 - g 76 -7.2 -4.15044 | GCCTGTGGCAATAAA GAGTTT TTA AAACTC CACCACCCTAAGAAA HPP12_0510 535442 - 536434 + | hypothetical protein TERM 486 537032 - 537054 + G 71 -6.2 -4.24204 | opp_overlap 537032, overlap 537032 CTTATTAAATAGAAC GGCTGTGCTC AAA GAGCATGCCC TTTTAACTATCCATA HPP12_0511 536421 - 537176 + | hypothetical protein TERM 487 537916 - 537906 - g 81 -5.4 -5.14965 | opp_overlap 537906 ACGCTTAGCAAAAAA CGAT AAA ATCG CTATCGTTTATACAA TERM 488 538525 - 538510 - g 75 -5.4 -4.82901 | overlap 538492 GTTTTTTTAGAAAAA GCTCAG CATT CTAAGC AAAAATTAGAAGAAC HPP12_0512 537385 - 538596 + | outer membrane protein HPP12_0513 538596 - 539234 + | UDP-sugar diphosphatase HPP12_0514 539245 - 540594 + | plasminogen binding protein glcD 540596 - 541975 + | glycolate oxidase subunit TERM 489 542467 - 542453 - g 70 -2.7 -5.11033 | opp_overlap 542456 542457, overlap 542456 CACAATCTCAAAAAA GACGC GCCGA GCGGC ACTGCGTTGAGTTTG dapB 541997 - 542761 + | dihydrodipicolinate reductase TERM 490 542812 - 542843 + F 95 -14.6 -2.78816 | TTTGTAAGGATTGAT CTTGCCTTGTGTGA TTAG TAACACAAGGCAAG TGTGGTAAACCCTAC lpp 543095 - 543211 + | urease-enhancing factor TERM 491 543411 - 543442 + T 84 -8.2 -4.62336 | opp_overlap 543396 543418, overlap 543415 543432 CAAAAAACCACTTTT TTAAGAATAAGGTA TTTT TGCCTTATTCTAAA TTTTTAGAGTGGGAT glnA 544923 - 543478 - | glutamine synthetase TERM 492 544107 - 544119 + g 71 -6.2 -4.13945 | TCCCGCTCCCGTTAT CCCC ATATA GGGG TTTTGGCATGAAAGT TERM 493 545396 - 545382 - g 70 -3.6 -4.8543 | GAATTGTTAGAAAAA TTTTCG CGC CAAAAA ATCCAGAATCGCTAC TERM 494 546240 - 546227 - g 73 -2.4 -5.24129 | overlap 546239 CTTTGTTACAAAAAA GATC AATAAA GATC AATATCTTGAAAGTA HPP12_0519 545061 - 547148 + | hypothetical protein rplI 547211 - 547660 + | 50S ribosomal protein L9 hslV 547664 - 548206 + | heat shock protein protease subunit TERM 495 548860 - 548846 - g 93 -5.8 -5.59564 | overlap 548832 ATAAAGTCAAAAAAA CTTTAA GCG TTAAAG AGGCTAAAGAAGCCC hslU 548206 - 549537 + | heat shock protein ATP-binding subunit TERM 496 550226 - 550206 - g 79 -8.3 -4.06864 | opp_overlap 550205 550206 TTTATAGAAGAAGAA CGCATAGAC AAG GTGTATGCG CGTATTATCGTAGAA era 549537 - 550442 + | GTP-binding protein Era-like protein HPP12_0524 550439 - 551431 + | hypothetical protein TERM 497 551536 - 551520 - T 79 -3.7 -5.52384 | GTTTGATTAAAAAAA CTACAGA GCT TCCATAG CTTTTTCATAGCCAA HPP12_0525 552374 - 551520 - | hypothetical protein TERM 498 551906 - 551892 - G 74 -6.4 -4.46212 | GCTTTTATTAGAAAA CATGCG AAC CACATG CCTGTAAGTCTTAAG TERM 499 552026 - 552041 + g 75 -2.5 -5.31275 | CTTTGATAGCGTTTT GTGCA TAGAAT TGCGC TTTTTTGTAATCCAC HPP12_0526 552393 - 552584 + | hypothetical protein TERM 500 552789 - 552753 - g 72 -4.6 -4.80736 | gap 1, opp_overlap 552754 CATGAAACAAAGAAA CCAAAC-GCTTTTGTAA ATTT TTTCAAAAACAGTCTGG CTGATAAACGTTATG cag1 552705 - 553052 + | cag pathogenicity island protein Zeta cag2 553160 - 553525 + | cag pathogenicity island protein Epsilon TERM 501 554527 - 554515 - g 77 -4.9 -4.86613 | overlap 554521 GAAAATCAAAAGAAA CTAAA AGC TTTAG AAGCAGAGTTGAAAA TERM 502 554531 - 554521 - g 75 -5.4 -4.76478 | overlap 554515 CAAAAGAAACTAAAA GCTT TAG AAGC AGAGTTGAAAAAGAA cag3 553525 - 554970 + | cag pathogenicity island protein Delta cag4 554980 - 555489 + | cag pathogenicity island protein Gamma cag5 558209 - 555963 - | cag pathogenicity island protein Beta virB11-2 559210 - 558218 - | cag pathogenicity island protein Alpha TERM 503 558602 - 558612 + g 73 -5.4 -4.56978 | TTCGGTGTCTTCAAT GGAT ATG ATCC TTTCTTCTTTAGGGA TERM 504 559159 - 559174 + g 87 -4.8 -5.5208 | CTTCTTTTAAAGCTC TTTCTA CTTC TAGAAA TTTTTTATCTTCTGC cagZ 559814 - 559215 - | cag pathogenicity island protein Z cagY 565669 - 559964 - | cag pathogenicity island protein Y VirB10-like protein TERM 505 560892 - 560904 + g 88 -4.1 -5.73978 | GCTTTAGCTTTTGCT GTGGA TTT TTCAC TTTTTTCTTTATCGT TERM 506 561128 - 561111 - G 72 -8.5 -3.56092 | opp_overlap 561107, overlap 561126 CCACCATTTTTGAAA TCCATTG GTAA CAATGGA TAACCTTTAGCCGCC cagX 567252 - 565684 - | cag pathogenicity island protein X VirB9-like protein TERM 507 566419 - 566442 + g 77 -11 -2.89565 | opp_overlap 566414 566412, overlap 566417 CACAACAAGATTGGT TCTCCAAGCG CTAT CGCTAGGAGA TAATTCTATGGAGTT cagW 568912 - 567305 - | cag pathogenicity island protein W TERM 508 567864 - 567853 - G 76 -2.2 -5.36965 | CAACATTAGAAAAAA CAGC TCTT ACTG CAGGTAAAATTGAAT TERM 509 568481 - 568496 + g 82 -4 -5.38958 | GTCTAGCACGCTATC CATGGA TACA TCTATG TTTTTATTTATCAAT cagV 569675 - 568917 - | cag pathogenicity island protein V cagU 570070 - 570720 + | cag pathogenicity island protein U cagT 570733 - 571575 + | cag pathogenicity island protein T cagS 572376 - 571777 - | cag pathogenicity island protein S TERM 510 572689 - 572675 - RH 83 -7.2 -4.80487 | opp_overlap 572674 572675 572677 572687, overlap 572687 TACAACTAAAATAAA GAGTTA AGA TAACTC ATTTTCAAAAAGGAG TERM 511 572778 - 572794 + rH 75 -8.1 -3.72241 | opp_overlap 572778 AAGCTTTGCATGAAA GATGAAA AAA TTTCATC TTTAGATAGTTAATA TERM 512 572794 - 572778 - RH 75 -8.1 -3.73072 | opp_overlap 572778 AAGCTTTGCATGAAA GATGAAA AAA TTTCATC TTTAGATAGTTAATA cagQ 573195 - 572815 - | cag pathogenicity island protein Q cagR 572903 - 573205 + | cag pathogenicity island protein R cagP 573974 - 573621 - | cag pathogenicity island protein P TERM 513 574902 - 574878 - g 71 -6.5 -4.19746 | CTCAGGTGAAAACAA GCAGTATTTTT AAA AAAACTACCGC TACCACTAAAGATAA TERM 514 575314 - 575300 - g 74 -4.3 -4.90266 | opp_overlap 575293 575312, overlap 575293 TTTACCAATCAAAAA TTGAG TTTCG CTCAA AAACAAAAATTGTGT cagM 574409 - 575539 + | cag pathogenicity island protein M TERM 515 575848 - 575832 - g 78 -3 -5.40474 | AGCGTTTGAAAAAAA GAACAA CTCTT CTGTTC AAAAAAAAGCGGCTA cagN 575554 - 576474 + | cag pathogenicity island protein N cagL 577268 - 576555 - | cag pathogenicity island protein L cagI 578410 - 577265 - | cag pathogenicity island protein I cagH 579533 - 578421 - | cag pathogenicity island protein H TERM 516 578791 - 578807 + g 77 -9.5 -3.46285 | opp_overlap 578789, overlap 578777 GTGCCTGAAGTTAGG GCATTAG TGG CTAATGC TTGGTATTTGGCATA TERM 517 578902 - 578880 - G 73 -2.1 -5.28481 | gap 1, overlap 578900 578901 CATGCAACTAAAAAA CACTT-TTGA TGAG CCAACAAGTG CACCTAAAGCGGTGC cagG 579978 - 579550 - | cag pathogenicity island protein G cagF 580843 - 580037 - | cag pathogenicity island protein F cagE 583796 - 580845 - | cag pathogenicity island protein E VirB4-like protein TERM 518 581014 - 580999 - G 88 -9 -4.54727 | CCTCTCAAATTAAAA CTAGCG ATAA CGCTAG GGCTTCCATCTTGTT TERM 519 581290 - 581269 - G 78 -7.3 -4.37092 | ATGTCTCTCACAAAA TAAGCGACC TTTG GATCGCCTA AATATTTCCAAGCTT TERM 520 581807 - 581797 - G 70 -5.4 -4.4078 | opp_overlap 581797 GCCGCCCAAGCAAAA GGAT TTA ATCC TGTATCTGTCCCTAG TERM 521 582077 - 582091 + g 73 -5.7 -4.63527 | opp_overlap 582076 582077 AATTCAGATAAAAAG GCGAA TTGAT TTCGC TTTTTAGCGTCATCA TERM 522 583633 - 583621 - G 83 -6.3 -5.12172 | GAGGAATAAATAAAA GTTTC AGG GAAAC CAAACAACCTATTCC cagD 584428 - 583805 - | cag pathogenicity island protein D TERM 523 584275 - 584291 + g 93 -2.1 -6.23317 | opp_overlap 584278, overlap 584278 CTAAATTCGTATAAA CAAGCCC ATT GGGAGTG TTTTTTTCTTTTTCT cagC 584777 - 584430 - | cag pathogenicity island protein C TERM 524 584838 - 584827 - R 82 -3 -5.69473 | opp_overlap 584819 584827, overlap 584819 TATATCATAAAAAAA GTAT TTTT ATAC TATTCATACAAGCAC cagB 585150 - 584923 - | cag pathogenicity island protein B TERM 525 585736 - 585713 - g 74 -5.3 -4.72986 | GATCCTGATCAAAAA CCAATCGTT GATAAG AACGATAGG GATAACAGGCAAGCT TERM 526 586068 - 586049 - g 87 -5 -5.40464 | overlap 586065 GATGATAAAGAAAAA GCAGAGTT TTTG AAATCTGC CAAACAATCTTTTGC TERM 527 588065 - 588055 - g 82 -4 -5.48303 | ACAAGCTCAAAAAAA TGAA GAT TTCA ATACTGGAAAAAATT TERM 528 588302 - 588282 - g 87 -5.3 -5.42605 | overlap 588285 TTAATAAAAAGAAAA CAGGGCAAG CAG CTAGCCATG AAGAACCCATTTACG TERM 529 588956 - 588940 - g 78 -2.9 -5.44119 | overlap 588941 GCTAGCGCAAAAAAA CCCTGAG TGG CTCAAGC TCGTGAATGATAAGA cagA 585581 - 589225 + | cytotoxin-associated protein A TERM 530 589281 - 589255 - T 81 -5.8 -4.92239 | opp_overlap 589258, overlap 589256 589258 589275 CCAAAAACGCAAAAA CCACCCCTTGCT AAA AACAAGGGGTTT TTTAACTTAAAATAT TERM 531 589280 - 589256 - T 80 -9.3 -3.53717 | opp_overlap 589258, overlap 589255 589258 589275 CAAAAACGCAAAAAC CACCCCTTGCT AAA AACAAGGGGTT TTTTAACTTAAAATA TERM 532 589258 - 589278 + T 100 -9.7 -5.15969 | opp_overlap 589256 589255 589258 589275 AAAACGCAAAAACCA CCCCTTGCT AAA AACAAGGGG TTTTTTAACTTAAAA TERM 533 589278 - 589258 - T 89 -11.9 -3.31103 | opp_overlap 589258, overlap 589256 589255 589275 AAAACGCAAAAACCA CCCCTTGCT AAA AACAAGGGG TTTTTTAACTTAAAA HPP12_0556 590538 - 589771 - | glutamate racemase rho 591893 - 590577 - | transcription termination factor Rho rpmE 592159 - 592362 + | 50S ribosomal protein L31 TERM 534 593225 - 593202 - g 88 -3.9 -5.74122 | TATGACACAAAAAAA CGCTAAAAA GCTTTA TTTCCAGCG TTTGTTAGAAGAAAA HPP12_0559 592387 - 593250 + | methylase HPP12_0560 593263 - 593946 + | 23S rRNA methyltransferase TERM 535 594402 - 594418 + G 74 -5.1 -4.67038 | opp_overlap 594398 ATCCAAAAAGTCTTC CAAATGG AAA CCCTTTG TTTTGGTTTTAGGGG HPP12_0561 593959 - 594924 + | hypothetical protein HPP12_0562 594921 - 595742 + | hypothetical protein HPP12_0563 596275 - 595811 - | hypothetical protein accA 597648 - 596710 - | acetyl-coenzyme A carboxylase A subunit TERM 536 597020 - 597009 - G 72 -4.4 -4.69622 | ATATAACGCTAAAAA TGGA ATAT TCCA TCATAGCCAATTTAT HPP12_0565 598909 - 597671 - | beta ketoacyl-acyl carrier protein synthase II TERM 537 598087 - 598062 - G 71 -6.7 -4.08767 | gap 1, opp_overlap 598057 598070 TTCATGGCTCTAAAA GCCCCTTCGCCC TCA GGG-GCTGGGGC TGTGATGTGGTTAGC acpP 599248 - 599012 - | acyl carrier protein fabG 600222 - 599479 - | 3-ketoacyl-acyl carrier protein reductase rpsU 600473 - 600261 - | 30S ribosomal protein S21 HPP12_0569 601824 - 600574 - | hypothetical protein TERM 538 601451 - 601462 + g 73 -2.2 -5.24129 | ATATTCAAACCATAC CTTC CTAA GAGG TTTTTTCTAGGAAAG TERM 539 601637 - 601627 - G 70 -5.4 -4.37092 | ACCTCTTGTATAAAA TTGG ATC CCAA AATTTGGAGTTAGAC HPP12_0570 601996 - 602241 + | hypothetical protein TERM 540 602231 - 602247 + T 89 -10.9 -3.6707 | ATTGTGATTCTTCTA GTAGGCT TTA AGCCTAC TTTAAGGTATTCGCT HPP12_0571 602912 - 602265 - | hypothetical protein dapF 603837 - 603019 - | diaminopimelate epimerase HPP12_0573 603952 - 604998 + | outer membrane protein HPP12_0574 605900 - 605133 - | radical SAM domain-containing protein TERM 541 605422 - 605443 + g 76 -2.3 -5.40072 | opp_overlap 605422 TTCGGCCATTTAAAG GTCTTTTGG ATAT TCAAAAAAC TTTTTTTAAACAAAC TERM 542 605785 - 605772 - G 71 -3.7 -4.87803 | opp_overlap 605772 CACTTTCAAAGAAAA GCGTC TAGC GGCGC TTAAATAGTGGTTTA HPP12_0575 607135 - 606035 - | GTP-binding protein TERM 543 606222 - 606235 + g 78 -3.7 -5.1861 | ACCCCAGCAGCCACA GGCGC GCTA GAGCC TTTTTTAATCGTCCA TERM 544 606615 - 606656 + g 72 -4.7 -4.69464 | gap 1, opp_overlap 606624, overlap 606624 606648 TTCGCCGGCTTTAAT TCTTCTA-AATGCGTTTTTA AAC TCAAAGCGCATTCTAAAAGA TTTTTAGCGTCTTTT pepA 608627 - 607137 - | aminopeptidase A TERM 545 607946 - 607966 + g 76 -3.2 -5.31091 | CAAGAGAGGCTTTAT TGACCGCT AAAAA GGCGTTCA TTTTCTTTTCTTCTA TERM 546 608317 - 608295 - G 79 -8.5 -3.97139 | opp_overlap 608294 TAAGCCCAAGAACAA CGCTTTCAG GTTTT CTAAAAGCG CGTTATCTTTAGAAT HPP12_0577 609253 - 608675 - | integral membrane protein apt 609807 - 609268 - | adenine phosphoribosyltransferase HPP12_0579 610197 - 609865 - | hypothetical protein rpiB 610706 - 610251 - | ribose 5-phosphate isomerase B HPP12_0581 611425 - 610727 - | membrane protein lepB 612306 - 611434 - | signal peptidase I TERM 547 611507 - 611493 - G 70 -8.6 -3.35522 | overlap 611491 CAACGCTTTTAAACA TGCGTT CCC AACGCA CCAGATAGCGTTTTT folD 613179 - 612307 - | methylene-tetrahydrofolate dehydrogenase HPP12_0584 615289 - 613259 - | hypothetical protein TERM 548 613830 - 613845 + g 75 -2.6 -5.24129 | gap 1 GATTTGGGGGTTTTT TCC-ACA AAT TGTTGGA TTTTTTCTAAAGGCA TERM 549 614873 - 614854 - G 71 -6.4 -4.2687 | opp_overlap 614854 614857 GTGAAAAACTAGAAA GAATAGGG TATT CCCCACTC ATTTTTAAAATCGTG HPP12_0585 615849 - 615295 - | hypothetical protein TERM 550 615639 - 615628 - G 72 -4.4 -4.66987 | overlap 615629 GAGACGGCAAGAAAA GCTT GCAT AAGC AAGGATCAAAAGACA HPP12_0586 616974 - 615856 - | neuraminidase TERM 551 616237 - 616225 - G 74 -9.1 -3.54638 | opp_overlap 616224 616223 AGAATGGTTTCTAAA CGCCA TGA TGGCG CAATTTTTAAAGGGG pyrC-2 617969 - 616950 - | dihydroorotase HPP12_0588 618947 - 617973 - | siderophore-mediated iron transport protein TERM 552 618318 - 618335 + g 84 -7.7 -4.78266 | ATCAATATCCCTTCT GGTTTGG TTAT CCAAGCC TTTATTATTTTCTTT TERM 553 618701 - 618711 + g 72 -4.6 -4.74132 | GCGTGGGTTTAGGAG CGCC CGG GGTG TTTTTACTAGGATCT TERM 554 618900 - 618886 - G 70 -8.6 -3.2964 | opp_overlap 618885, overlap 618875 AAATTCCTGTTAGAA TGATCC ACA GGATCA AAATTTTTCCCTAAC HPP12_0589 619812 - 618931 - | hypothetical protein fliN 620180 - 619809 - | flagellar motor switch protein nth 620918 - 620262 - | endonuclease III HPP12_0592 621145 - 620915 - | ferrous iron transport protein A HPP12_0593 624078 - 621142 - | hypothetical protein TERM 555 621406 - 621418 + gH 79 -4.9 -5.04175 | GGAAACTTCTAAATT CAAAT CTA ATTTG TTTTTGTCTAATTCA TERM 556 621802 - 621817 + gH 95 -9 -4.98255 | opp_overlap 621801, overlap 621813 CCCATGCACTAAATC CGCCAT GATC ATGGCG TTTTTATAATTGCCA TERM 557 623372 - 623391 + gH 79 -8 -4.05905 | opp_overlap 623372 623371 TTAAAGCTAGCAAAT TGGATTTT ATCA AAAATCCA TGTTTTTAAATTTTT pabC 623996 - 624985 + | aminodeoxychorismate lyase oorD 625170 - 625511 + | 2-oxoglutarate oxidoreductase OorD subunit TERM 558 626127 - 626117 - g 76 -3.2 -5.24129 | GTGGGCGATAAAAAA GACT ACA AGCC TTATGGGGTCGCGCA oorA 625511 - 626638 + | 2-oxoglutarate oxidoreductase OorA subunit oorB 626640 - 627461 + | 2-oxoglutarate oxidoreductase OorB subunit oorC 627461 - 628024 + | 2-oxoglutarate oxidoreductase OorC subunit TERM 559 630047 - 630037 - g 81 -5.4 -5.0809 | overlap 630031 AAGAAAGGATAAAAA GCTT TTT AAGC GATGAAGAATATCAC TERM 560 630262 - 630245 - g 74 -4.9 -4.8236 | gap 1 TATCCAAAAAAACAA GCTGATAG AAT CTATC-GC CAAAGCGTTTAATGA TERM 561 630536 - 630516 - g 90 -9.1 -5.10497 | opp_overlap 630515 AACTCACCCAAAAAA GCCTTTAAA TTG CTTAAAGGC ATCATTAAAGATAAG res-1 628179 - 631121 + | type III R-M system restriction enzyme TERM 562 631483 - 631469 - f 71 -6.4 -4.17089 | CTCAAACTTTTAAAA TCCGCT TAC AGCGAA AAAATCAAAATGATT TERM 563 631667 - 631654 - f 76 -6.7 -4.60924 | GAAATTTTTTAAAAA CACTC AAGG GAGTG GGACGCATAGCGGTT HPP12_0601 633095 - 633259 + | hypothetical protein TERM 564 633285 - 633296 + G 81 -3 -5.63517 | TGGATAAAGAAACCC GATT TTAT AATC TTTTTTCTTTGGCAA TERM 565 633695 - 633711 + G 83 -5.1 -5.34632 | opp_overlap 633695 633694 GATTATCCATTAAAC GCGCT CCAAAAA AGCGC TTTTTATGTTTTCTT TERM 566 633745 - 633757 + G 71 -4.8 -4.55295 | GGTGGTGGGTTCTAA CGCT GTGCA AGCG TTTATTTCTACCGGG HPP12_0602 633269 - 634741 + | dsbb-like protein TERM 567 635451 - 635434 - g 78 -2.7 -5.46276 | gap 1, overlap 635448 AAGAGATAGAAAAAA TCGCTACC AAA AG-AGCGA CAATAAGAGTGGCGC HPP12_0603 635217 - 635795 + | tumor necrosis factor alpha-inducing protein pbp-1a 637777 - 635798 - | penicillin-binding protein 1A TERM 568 636702 - 636717 + g 83 -3.2 -5.67063 | CGTTTGGCTTGCGTG GCGC GATTGAAA GCGC TTTTTTTATAATCAA TERM 569 637170 - 637158 - G 70 -3.3 -4.93296 | GTAGGATCATAAAAA CTCGG AGC CCTAG GCAAGGCGACTAACA TERM 570 637444 - 637454 + g 81 -6.8 -4.77036 | CTTCAGTGTAGCGAC CGCT TTT AGCG TTTTTAATCATAGCG bioF 638899 - 637778 - | 8-amino-7-oxononanoate synthase TERM 571 638162 - 638146 - G 79 -8.7 -3.96892 | opp_overlap 638146 AAGCGGTAGTATAAA TCACGCT TTT AGCGCGA TTGGTTAAAAACTCT HPP12_0606 640223 - 638922 - | methyl-accepting chemotaxis transmembrane sensory protein (MCP-like protein) TERM 572 639350 - 639363 + g 71 -5.3 -4.60041 | ATTTTGCCGCTTGCG CAACA ATCA TGTTG TTTTTCACGGTGGAT spab 641209 - 640295 - | multidrug resistance protein HPP12_0608 642074 - 641175 - | multidrug resistance protein TERM 573 642189 - 642212 + H 76 -3.8 -5.24129 | overlap 642190 CCGATAATAGTTCCA ACCAAAAGCA AGGA TGCCTTTGGG TTTTTTATAACAAGG TERM 574 642190 - 642211 + H 70 -7.3 -3.73995 | overlap 642189 CGATAATAGTTCCAA CCAAAAGCA AGGA TGCCTTTGG GTTTTTTATAACAAG TERM 575 643181 - 643169 - g 73 -5.5 -4.56914 | GGATTGAAATCAAAA CCGAC AGC GTCAG TAACGGGCCTAGCGC flaA 642238 - 643770 + | flagellin A TERM 576 643819 - 643839 + F 100 -11.9 -4.40221 | AAGTGTTTGTATGGG GCTAACGCT TTA AGCGTTGGC TTTTCGCTTTCATTT TERM 577 644162 - 644175 + G 70 -5.9 -4.36914 | overlap 644163 AGCTTGCAGAGTGTG TCCGC CCTA GCGGG TTTTATAACCAAAAA TERM 578 644463 - 644440 - g 71 -5.3 -4.57073 | CATTTTTTTGAAAAA GGCGTTCAA GAGAAT TTGAATGCC GCCTTAGCGCTTTAT HPP12_0610 643912 - 644568 + | 3-methyladenine DNA glycosylase TERM 579 645058 - 645070 + G 85 -5.5 -5.33405 | opp_overlap 645058 TGAGCATAGAAGCAA GGGGT GGT ATCCC TTTTTATTTCATCCA HPP12_0611 644565 - 645182 + | hypothetical protein hemE 645251 - 646270 + | uroporphyrinogen decarboxylase TERM 580 646529 - 646517 - g 75 -2.6 -5.2112 | opp_overlap 646521 646525, overlap 646518 646521 646525 AATACCATGAAAAAA GCGA TAAAG CCGC TTTGGGGCTTTATGA TERM 581 646623 - 646638 + G 89 -9 -4.72386 | opp_overlap 646606 646622 646620 646617 646625 GATGAAAAACCATAC CATCGC CAAA GCGATG TTTTTGCCTACTTTG hefA 646279 - 647712 + | outer-membrane protein of the HefABC efflux system HefA hefB 647723 - 648427 + | membrane fusion protein of the HefABC efflux system HefB TERM 582 649537 - 649555 + G 78 -7.4 -4.41494 | CATGGGGACTTTTGC GCTCATTC AAT GGATGGGC TTTTCATTAAACATG hefC 648440 - 651526 + | cytoplasmic pump protein of the HefABC efflux system HefC HPP12_0616 651523 - 652092 + | hypothetical protein TERM 583 652912 - 652901 - gf 73 -7.2 -3.90291 | opp_overlap 652900 652901, overlap 652885 ATTTTGGCAACCAAA CCCC TAAT GGGG GCTTTAATGCTATGG TERM 584 654789 - 654771 - gf 85 -8.8 -4.10161 | GATTAGCGGGGAAAA CCCTAGCG GCA CGCTAGTG GATAAGGATCAATCC TERM 585 655062 - 655072 + GF 76 -6.8 -4.43681 | opp_overlap 655056 GCAAGATTACAGCGG CGCT AAC AGCG TTTTAGTGTTCAATC TERM 586 656301 - 656287 - gf 76 -4.2 -5.06816 | AGCGCTCAAGAAAAA GCCAAT AAC AATGGC GGATCGATCTGGTTT TERM 587 658952 - 658940 - gf 73 -7.7 -3.83771 | AAGAAATCGATCAAA TGCTC TTA GAGCA AATCCAAGCCCATTC HPP12_0617 652243 - 660750 + | vacuolating cytotoxin VacA-like protein HPP12_0618 660696 - 661814 + | vacuolating cytotoxin VacA-like protein TERM 588 661821 - 661832 + T 80 -7.2 -4.59853 | opp_overlap 661820 GCGTTTTAAAAGTAG GGGG CTTA CCCC TTTTTGAGCCATTAA HPP12_0619 662382 - 661873 - | ABC transporter permease TERM 589 662185 - 662175 - G 79 -5.4 -4.87665 | TTCTAGCTACAAAAA TTGC CAA GCAA AAACAAAACAATGCA HPP12_0620 662629 - 662390 - | ABC transporter permease HPP12_0621 663105 - 662629 - | ABC transporter ATP-binding protein HPP12_0622 663331 - 663089 - | ABC transporter ATP-binding protein TERM 590 663537 - 663522 - R 88 -7.6 -4.86385 | ACTCTCAAAAATAAA CAAAGC CAAG GCTTTG AATAAAAAGATCAAT HPP12_0623 663972 - 663640 - | hypothetical protein ligA 666096 - 664126 - | DNA ligase TERM 591 665001 - 665017 + g 71 -3.8 -4.83715 | opp_overlap 664992 TAATGACAACGACCC TATCAT TGAGC ATGATA TTCTTTTTTTCAATT TERM 592 665894 - 665913 + g 73 -5.6 -4.65895 | opp_overlap 665894 TTTTTACTGAATGGA GTGGTGGT AGTA GCCCCCAC TTTTTGGGTAGGGGA TERM 593 666224 - 666196 - g 74 -6.1 -4.46155 | gap 1, overlap 666199 GAGATATTGACAAAA CGACTTCGTTGC ACTTAA ACAACGAAG-CG CAATTTCTATGCTTT cheV-2 666174 - 667115 + | chemotaxis protein TERM 594 667236 - 667249 + G 80 -4.5 -5.24551 | opp_overlap 667236, overlap 667230 TAACACTTATAGAGA CCATG GAGG CGTGG TTTTTATTGATTTAA TERM 595 667606 - 667617 + G 81 -7.2 -4.62471 | ACTCGTAACACTCTA GCCC AAAA GGGC TTTTTAGAGATTGAA aspS 667150 - 668883 + | aspartyl-tRNA synthetase adk 668900 - 669475 + | adenylate kinase TERM 596 670725 - 670687 - g 70 -8.2 -3.62041 | overlap 670685 ATACAGCAAACAATA CGCTCCTTTAAAAACCCC TAA AGAGATTTAAAAAGAGCG GACTTTATGTTAGAA HPP12_0628 669500 - 670717 + | lipopolysaccharide biosynthesis protein ppa 670773 - 671294 + | inorganic pyrophosphatase TERM 597 671291 - 671280 - f 74 -5.8 -4.52803 | GAGAAAGCCATAAAA GCCT ATCA AGGC TAAAGATTTAAGGGT TERM 598 671673 - 671687 + G 70 -3.6 -4.92314 | AAATCTTACGAAAAT TATCAT GGT ATGGTA TTTTTATGCATTACT TERM 599 671871 - 671861 - g 70 -2.6 -5.09762 | GTTCAATAAAGAAAA TAAA ACC TTTA AGATTTTTCGCATAG HPP12_0630 671370 - 671933 + | hypothetical protein TERM 600 672015 - 672001 - g 78 -4.2 -5.2894 | AAAGACAAAATAAAA GCCTAT GAT ATGGGC ATTAAAAATTGTGAA TERM 601 672151 - 672164 + G 87 -5.3 -5.40474 | TGGTTTGTGATTAAG GATAG CGAT CTATC TTTTTTTAAACGAAT TERM 602 672219 - 672234 + G 76 -3.4 -5.25805 | TCGCGCTAAACCCCA TTTTAA AGAT TTAAAA TTTTTTGCCTTTGTT HPP12_0631 671950 - 672867 + | hypothetical protein HPP12_0632 672946 - 673329 + | hypothetical protein TERM 603 673488 - 673474 - gT 71 -6.4 -4.16279 | opp_overlap 673474, overlap 673486 TAGAGCATGCTAAAA CGGCTT TAA AAACCG CTTTAGAGGGGCAGG HPP12_0633 673284 - 673793 + | hypothetical protein TERM 604 673790 - 673779 - T 74 -5.8 -4.52803 | GAGAAAGCGATAAAA GCCT ATCA AGGC TAAAGGTTTAAGGGT mutS 676191 - 673939 - | DNA mismatch repair protein TERM 605 674001 - 674014 + g 76 -4.5 -5.06103 | opp_overlap 673980 673997, overlap 673999 CGTCGCTAAAGCTCA CCACT TTGG GGTGG TTTTTTAGAAATTCT TERM 606 675416 - 675404 - G 79 -4.9 -5.01732 | opp_overlap 675409 AAGCTGTCTAAAAAA TCAAA TTC TTTGA AAAGGAATTTTAAAA HPP12_0635 676565 - 676188 - | hypothetical protein TERM 607 676392 - 676377 - G 73 -5.4 -4.56597 | opp_overlap 676377 676383 676390 TTCCCCCCTTAAAAA CGCTCT TTGC AAAGCG ATTTCTTGCTGGTTT murC 677914 - 676565 - | UDP-N-acetylmuramate-alanine ligase TERM 608 677189 - 677203 + g 90 -3.6 -5.93809 | TTTTAAAATGTATTG GATATT ATA AATGTC TTTTTTTTCTAAAAC TERM 609 677867 - 677882 + g 75 -5.4 -4.66163 | ACCGATAAAATGGAT CTTGCA ATCT TGCAGG TTTTTGAGTAAAACT HPP12_0637 679034 - 677907 - | N-succinyldiaminopimelate aminotransferase HPP12_0638 679154 - 680233 + | 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthetase dapD 680236 - 681441 + | tetrahydrodipicolinate (THDP) N-succinyltransferase hcpF 681453 - 682511 + | cysteine-rich protein F TERM 610 682615 - 682628 + F 84 -5.3 -5.53079 | AAGAGATTACCGCTT GCTTT GCGC AAAGC TTTTTTATATCTTTT TERM 611 682656 - 682668 + F 71 -3.3 -5.03747 | TTTGGATAAATTCAG CCACA AAT TGCGG TTTTTTCAAAAGTTT TERM 612 683423 - 683409 - g 71 -5 -4.52047 | opp_overlap 683409 GATGATAGGAGAAAA TTCTGA CAA CCAGAA TCGTCTTTATGACAC HPP12_0641 682744 - 684792 + | hypothetical protein HPP12_0642 685421 - 684837 - | modulator of drug activity B TERM 613 685938 - 685918 - g 72 -8.4 -3.4439 | TATATCAATCTAGAA TACCATGA GACCA TCATGGTA GCGAGCGGTTTTCAA hydA 685582 - 686736 + | quinone-reactive Ni/Fe hydrogenase HydA TERM 614 688396 - 688424 + G 75 -8.2 -4.07885 | CATTCTTTTGACCCA TGCATCGCATGC TCGGT GCATGTGATGGA TTTTAAAGGGCAGTC hydB 686746 - 688482 + | quinone-reactive Ni/Fe hydrogenase HydB hydC 688495 - 689169 + | quinone-reactive Ni/Fe hydrogenase HydC hydD 689166 - 689702 + | quinone-reactive Ni/fe hydrogenase HydD TERM 615 690685 - 690674 - g 73 -5.8 -4.56775 | opp_overlap 690674 ATGGTTCTTTAAAAA CGCT TTTA AGCG TTAGTTTTGATTTCA HPP12_0647 689704 - 691242 + | hypothetical protein HPP12_0648 691660 - 691247 - | hypothetical protein HPP12_0649 692249 - 691797 - | hypothetical protein hopH 692433 - 693353 + | outer membrane protein HopH exsB 694106 - 693420 - | trans-regulatory protein ExsB TERM 616 695206 - 695177 - g 72 -3.6 -5.0133 | opp_overlap 695205, overlap 695183 GAGCCTTTTAAAAAA GAACAC-CTAGCCC TTAA GGGC-AGTGCGCTC CAAAACTTGGGTTAT HPP12_0652 694169 - 695377 + | poly(A) polymerase TERM 617 695602 - 695617 + G 70 -3.3 -4.88217 | TTAAAGACAAGACTC GTTTC CGTTTT GAAAC TTTTGGTTTTTTAGT HPP12_0653 695391 - 695894 + | hypothetical protein HPP12_0654 695911 - 696753 + | 3-hydroxyacid dehydrogenase HPP12_0655 696772 - 697425 + | NAD(P)H-flavin oxidoreductase TERM 618 697481 - 697460 - f 93 -10.1 -4.10934 | opp_overlap 697460 697460 697470, overlap 697462 ATAACCAACCATAAA GAGCTTGGC GTTA GCCAAGCGC TAATCTCTTAAATGA TERM 619 697460 - 697481 + F 75 -10.1 -2.76322 | opp_overlap 697460 697462, overlap 697460 697470 ATAACCAACCATAAA GAGCTTGGC GTTA GCCAAGCGC TAATCTCTTAAATGA TERM 620 697479 - 697462 - f 90 -11.3 -3.63843 | opp_overlap 697460 697460 697470, overlap 697460 AACCAACCATAAAGA GCTTGGC GTTA GCCAAGC GCTAATCTCTTAAAT gltX 697590 - 698909 + | glutamyl-tRNA synthetase TERM 621 699041 - 699062 + G 74 -6.5 -4.32882 | overlap 699043 CCTATCATGCAAATC CTCGCTCGC TTGT GTGAGCCAG TGTTTTATTTTTTAC TERM 622 699043 - 699064 + G 78 -2.9 -5.42198 | overlap 699041 TATCATGCAAATCCT CGCTCGCTT GTGT GAGCCAGTG TTTTATTTTTTACGC HPP12_0657 698906 - 699199 + | integral membrane protein TERM 623 699304 - 699294 - g 80 -2.4 -5.65177 | opp_overlap 699294 AGATTTAGAAAAAAA GCCC GCC GGGA TCGTTAGGGATTATT TERM 624 699998 - 699961 - g 70 -2.8 -5.00884 | gap 1, opp_overlap 699987, overlap 699970 ATCTTGCGCAAAAAA CCCTCTAAAGCGCTCAA GTATT TTGAACGC-TCAGAAGC GGTGGTTAAAGACGA HPP12_0658 699208 - 700890 + | soluble lytic murein transglycosylase galU 700887 - 701708 + | UDP-glucose pyrophosphorylase HPP12_0660 701720 - 702127 + | hypothetical protein HPP12_0661 702130 - 703398 + | UDP-N-acetylglucosamine enolpyruvyl transferase TERM 625 703413 - 703396 - f 74 -2.1 -5.45802 | gap 1, overlap 703400 CGCTTAAAAGAAAAA TAATCCAA GAT TTGG-TTA CAATAGCTAGAATAT aspA 703456 - 704862 + | aspartate ammonia-lyase HPP12_0663 704868 - 705497 + | hypothetical protein fucT 706891 - 705506 - | alpha1,3-fucosyltransferase TERM 626 705914 - 705880 - G 73 -7.4 -4.07568 | opp_overlap 705868, overlap 705881 TGTCGTTTTCTAAAA TCGTTTTAAAAAAATC TAG GATTTTTTTAAAACTC AAATCTTGGTAAAAG TERM 627 705913 - 705881 - G 78 -10.9 -3.04398 | opp_overlap 705868, overlap 705880 GTCGTTTTCTAAAAT CGTTTTAAAAAAATC TAG GATTTTTTTAAAACT CAAATCTTGGTAAAA serB 707554 - 706931 - | phosphoserine phosphatase pfr 708073 - 707570 - | nonheme iron-containing ferritin TERM 628 708336 - 708315 - H 79 -3.8 -5.48787 | ATAATATATAAAAAA GCATTCTT CAATCT AAAAATGC TACAATGTTTATCTT HPP12_0667 708375 - 709457 + | radical SAM domain-containing protein TERM 629 712010 - 711998 - g 71 -6.2 -4.14392 | opp_overlap 711998 TCTTAACCTTTAAAA CCCC AACTA GGGG GAGTTTCTTCTATAA HPP12_0668 709540 - 712281 + | protective surface antigen D15 HPP12_0669 712283 - 713344 + | radical SAM domain-containing protein HPP12_0670 713350 - 714651 + | processing zinc-metalloprotease TERM 630 715476 - 715491 + G 72 -3.2 -5.1356 | opp_overlap 715476, overlap 715478 CGCTATTTTAAAGAT CCGGAT TTGT ATCCTG TTTTTATTGATGAGA gatB 714651 - 716075 + | glu-tRNA(Gln) amidotransferase subunit B TERM 631 716447 - 716435 - g 72 -3.4 -5.11112 | AAACCTGAAGAAAAA GAGA CAACC TCTC AAACTCTTGAAAAAA TERM 632 717203 - 717190 - g 74 -5.3 -4.77925 | overlap 717198 AAAAAAGGGTAAAAA TGAAG TGAG CTTCA GTCAAGCCAAACAAT HPP12_0672 716075 - 717319 + | hypothetical protein TERM 633 717353 - 717365 + GF 71 -4.9 -4.59081 | CTTCAATTTTCTCTA TAAAG ATT CTTTA TTTTCTATCGCTTTA TERM 634 717466 - 717456 - gf 86 -2.6 -5.7827 | overlap 717457 AAGAGAAACAAAAAA TTTT TAC AAAA ATTCGCCAAAAATCA HPP12_0673 717330 - 718340 + | hypothetical protein rnhA 718207 - 718773 + | ribonuclease H TERM 635 719110 - 719127 + G 71 -7.1 -3.96148 | AAGATTATTTGCGCG TTTCTTC TTCT GAAGAAA TTTCTAATGGGAGGG TERM 636 719478 - 719464 - g 72 -10 -2.62293 | overlap 719463 AAGCCGAACAGCAAT GCGCTT ATC AAGCGC TTCAAAAACTTAAGG rnc 718785 - 719504 + | ribonuclease III aroC 719501 - 720598 + | chorismate synthase TERM 637 720886 - 720874 - g 80 -7.7 -4.3351 | AGAAAATGCAAGAAA GGCTT TTG AAGCC AGGCTTAGGGCGGAA HPP12_0677 720635 - 721150 + | hypothetical protein TERM 638 721486 - 721500 + G 79 -3.5 -5.40474 | gap 1, overlap 721486 CAATTCCACTATGGA GG-CGG CACG CCGACC TTTTTTTCGCCCCCT TERM 639 722215 - 722200 - g 80 -6.1 -4.78107 | opp_overlap 722199 722200 CACCAGTATGAAAAA GCCCT TGATTT AGGGC ATTTACCGGTAGAAA hemN-1 721150 - 722523 + | oxygen-independent coproporphyrinogen III oxidase TERM 640 723470 - 723460 - g 89 -6.8 -5.24129 | GTCTTTTAGAAAAAA TCCC TAA GGGA AAAAAAGAGGTTATT glpC 722520 - 723821 + | anaerobic glycerol-3-phosphate dehydrogenase TERM 641 724136 - 724118 - g 74 -6 -4.33281 | overlap 724120 ACCTCAAACAAAGAA TACATCGC CGT GCAATGCA AATTCCATCAAAACA TERM 642 725587 - 725573 - g 73 -8.6 -3.75505 | overlap 725581 CTTGAAAAATTAGAA GAACTC AAT GAGTTC CAACCCAACACTTGC HPP12_0680 723896 - 725884 + | type II R-M system protein HPP12_0681 725865 - 726584 + | type II R-M system protein TERM 643 726806 - 726779 - g 89 -4.3 -5.56673 | gap 1, opp_overlap 726787, overlap 726783 ATTTAGAAGAAAAAA CCA-ATAAAGGG GTGCT CCCTTTATATGA GGATTTGAAAGAAAA TERM 644 726801 - 726783 - g 73 -7.5 -4.05512 | opp_overlap 726787, overlap 726779 AGAAGAAAAAACCAA TAAAGGG GTGCT CCCTTTA TATGAGGATTTGAAA TERM 645 727242 - 727257 + G 90 -7.6 -5.24531 | TAGCGGATCCAGGGC GACGAT AGCG ATCGTC TTTTTTGTGAAAGAT TERM 646 727949 - 727964 + G 72 -3.2 -5.02323 | overlap 727950 ATGGTAAGGATTTTA GCGCTT TGGT AAGCGA TTTTATTTCTGATAG TERM 647 728190 - 728175 - g 78 -2.6 -5.41787 | opp_overlap 728187, overlap 728188 GAAAAAATACAAAAA TTCTCT CGCC AAAGAA GCGCCGCGCATCGCT HPP12_0682 726574 - 728628 + | type II R-M system protein TERM 648 728663 - 728674 + G 76 -4.4 -5.02074 | GGAATATTTTGAAGG GCAA TGTC TTGC TTTTTTAAAAAATCC TERM 649 729105 - 729124 + G 78 -3.7 -5.24129 | opp_overlap 729090 729105, overlap 729090 GATTTTATTTTACAA TCATTTT ATATTC AAAATGA TTTTTTATCCCAAAA HPP12_0683 728625 - 729974 + | hypothetical protein horF 730096 - 730908 + | outer membrane protein HorF TERM 650 730927 - 730950 + F 93 -9 -4.68384 | AAAACGCTTGTTTTT CTCTAATTGG ATTT TCAATTAGAG TTTTCTTACATAGAT TERM 651 730975 - 730995 + F 84 -6.3 -5.055 | opp_overlap 730986, overlap 730972 ATAGATCACCGCTTT CTTTTGAAA CAT TTTTAAAAG TTTTTTGAAAATTAG aspB 731067 - 732239 + | aspartate aminotransferase TERM 652 732519 - 732504 - g 72 -3.4 -5.04868 | opp_overlap 732495 732504, overlap 732499 732494 CTAAATTAAAGAAAA TTTTTA TTGT TAAAAA CTCTCTTTTAGAAAA TERM 653 732623 - 732611 - g 74 -4.9 -4.75356 | opp_overlap 732611 732615, overlap 732615 AAACATAGGGAAAAA GAATT AGA AATTC TATTTTTTGAAAACA TERM 654 732615 - 732625 + G 71 -4 -5.00616 | opp_overlap 732611 732615, overlap 732611 ATAGGGAAAAAGAAT TAGA AAT TCTA TTTTTTGAAAACAAA HPP12_0686 732395 - 732673 + | hypothetical protein TERM 655 732954 - 732940 - g 70 -3.6 -4.87807 | CGAATACACCAAAAA GATTTC TTT AAAATC GCTCAAAAGCATTGA TERM 656 733046 - 733058 + G 80 -6.2 -4.72846 | AAAAATTACAGGATC GCCC TACTC GGGC TTTTTAGCTATATAG HPP12_0687 732674 - 733744 + | integrase-recombinase protein ogt 734312 - 733806 - | methylated-DNA-protein-cysteine methyltransferase HPP12_0689 735083 - 734316 - | integral membrane protein TERM 657 734986 - 734971 - G 73 -6.8 -4.17762 | overlap 734950 GATTCTTCAAAAGAA TGCCCG GTTG CGAGCA TGATAGGGACAATGA wbpB 736144 - 735197 - | lipopolysaccharide biosynthesis protein WbpB TERM 658 735688 - 735698 + g 72 -3.2 -5.04175 | overlap 735682 GCGTGATGTCAAACA CCTT TTC AGGG TTTTTGTCTAATTCG nrdA 738572 - 736206 - | ribonucleoside-diphosphate reductase 1 alpha subunit TERM 659 738349 - 738332 - G 87 -3.4 -5.75478 | AATCATACAAAAAAA GCCTTG AGGCGA CAAAGC TCCAATTAGGCGTGT HPP12_0692 739219 - 738737 - | hypothetical protein HPP12_0693 739578 - 739243 - | hypothetical protein TERM 660 739848 - 739861 + r 72 -2.5 -5.24531 | opp_overlap 739843 TAATAAGAATGGGTT TTAAA ATTT TTTAA TTTTTTATACCCCCT HPP12_0694 740404 - 739901 - | hypothetical protein HPP12_0695 740773 - 740444 - | hypothetical protein glmU 742277 - 740976 - | UDP-N-acetylglucosamine pyrophosphorylase TERM 661 742414 - 742426 + G 76 -9.1 -3.65902 | opp_overlap 742414 TATGCCCTTTAATGA GCGCT GAT AGCGC TTTGCCTAGCGTCAA TERM 662 742556 - 742574 + G 76 -2.4 -5.42198 | gap 1, overlap 742549 AGTGATGACGAGTTT CACC-CG TTTGAT CGTGGTG TTTTCTTTTTTAAGG fliP 742323 - 743105 + | flagellar biosynthetic protein TERM 663 743135 - 743115 - T 72 -8.4 -3.5032 | GTTTGATATCAAACA TTCAAGCT ATAAA AGCTTGAA ACCAGTTTAAAACTC fecA-1 745445 - 743142 - | iron(III) dicitrate transport protein TERM 664 745634 - 745622 - R 77 -3.5 -5.42975 | opp_overlap 745622 GGATATAAAGAAAAA TAAAA ATT TTTTA ATATTTCTAATGGGG TERM 665 745669 - 745682 + r 74 -6.7 -4.42653 | opp_overlap 745669 TTTTAAACGGACAAA GGGTT TAAA AACCC TTTTATGGCTAGCCT feoB 747626 - 745698 - | iron(II) transport protein TERM 666 747255 - 747295 + g 88 -4.1 -5.85737 | overlap 747257 ATTGATTTTAATGCC TTCTTTTTGCGCTTCAT CCCACAT ATTAAGCGCGAGAAGCA TTTTTTTATTCGTGT TERM 667 747364 - 747350 - G 72 -10 -2.73619 | overlap 747349 AATTACGCTCTAAAT TGGTGG AAT CCACCA CATTAAGAATGAGAT HPP12_0700 747764 - 748576 + | hypothetical protein TERM 668 749107 - 749097 - g 84 -6.8 -4.98255 | CCCTAATGACAAAAA CGCT TTT AGCG TCAATATGGTTTGTG HPP12_0701 748858 - 750033 + | acetyl coenzyme A acetyltransferase scoA 750044 - 750742 + | succinyl-coa-transferase subunit A TERM 669 750951 - 750969 + G 72 -4.4 -4.68593 | overlap 750955 AAAGGAAACCGTAAC CGTGGTGC CGG GCGCTTCG TTTTTCAATAGTGCG scoB 750739 - 751362 + | succinyl-coa-transferase subunit B TERM 670 751500 - 751526 + G 71 -6.6 -4.05446 | TTCTTGTTTATGGTT TGACAGGGCAAG ACG CTTTTTCTGTCA TTTCTAGTTGGGGGA atoE 751382 - 752746 + | short-chain fatty acids transporter HPP12_0705 752870 - 753871 + | outer membrane protein TERM 671 754675 - 754665 - f 83 -6.8 -4.87786 | GCAATCTCATAAAAA CGCT GAA AGCG AGCGGATCGTTAGAG HPP12_0707 756270 - 758567 + | N-methylhydantoinase B HPP12_0708 758584 - 759084 + | acetone carboxylase gamma subunit TERM 672 759164 - 759142 - f 88 -7 -4.90455 | opp_overlap 759141 ACACACTTATAAAAA GCTTGGGTTA ATT CAACTCAAGC GAATTTTTCTTCAAT TERM 673 759590 - 759607 + G 88 -7.7 -5.0538 | overlap 759575 759605 GGGATTGCAGGCACT CCCTTTG AATG CGAAGGG TTTTTTAAAATCGCA TERM 674 760343 - 760331 - g 80 -7.7 -4.33258 | opp_overlap 760330 ATGGCTAAAGACAAA CGATC CCA GATCG CTCTTAACGCCCAAG HPP12_0709 759419 - 760447 + | hypothetical protein TERM 675 760473 - 760497 + G 80 -2.3 -5.55769 | gap 1, opp_overlap 760473 760483 760494, overlap 760473 760494 CCCCCCAAAGCTAAA GGG-TTTAAA CGCCTT TTTAAAGCCC TTTTTTATTCTAAAG TERM 676 760752 - 760773 + G 70 -2.9 -5.15117 | opp_overlap 760745, overlap 760755 760755 AAAGACATGGCCAGT TCAGCCCAA CTGA TAGGGCTTA TTTTTTGGGCTTTTA TERM 677 760755 - 760783 + G 70 -3.1 -4.86731 | opp_overlap 760745, overlap 760752 760755 GACATGGCCAGTTCA GCCCAACTGATAG GGC TTATTTTTTGGGC TTTTATTTGGGGGCG TERM 678 760796 - 760812 + G 76 -6.6 -4.44448 | GGCTTTTATTTGGGG GCGTTA TCTTT TAACGC TTTATTTGAAGTAAT dgkA 760440 - 760826 + | diacylglycerol kinase TERM 679 761639 - 761624 - g 70 -3.3 -5.00234 | CAAAAAATAAAGAAA TCATC GTTTTA GATGA AATGCCTTTTCAAAC TERM 680 762475 - 762489 + G 75 -2.8 -5.28176 | opp_overlap 762477, overlap 762477 AGCACTTATGAAGAC GATTTC ATT GAAAAC TTTTTTGTGGCTAAC gyrA 760846 - 763326 + | DNA gyrase subunit A HPP12_0712 763326 - 763799 + | hypothetical protein TERM 681 764445 - 764426 - g 74 -4.9 -4.72272 | overlap 764407 764428 TTTGGGTATCAAAAA GGGGCGT TCACGG ACGCCAC AGCACCTAAAATGGG HPP12_0713 763796 - 764941 + | transcriptional activator of flagella proteins HPP12_0714 765015 - 765323 + | hypothetical protein TERM 682 765402 - 765381 - gT 89 -11.7 -3.49886 | overlap 765377 AGCGGATACAAGGAA CGGAATTTG TGAT CAAATTCCG CTATAAAAAGTGGGG HPP12_0715 765290 - 765598 + | hypothetical protein TERM 683 765716 - 765747 + T 87 -9.8 -4.05714 | GCTCTTTACTATTGA TTATAAAAAATGTT TTTT AGCATTTTTTATAA TTTATGATTAACGCT uvrA 768672 - 765847 - | excinuclease ABC subunit A TERM 684 766667 - 766679 + g 87 -4.9 -5.44721 | ACAATCTCCACCCCA TTCAA GCT TTGAA TTTTTTTAGCATGGT TERM 685 767306 - 767275 - G 90 -3.8 -5.94713 | overlap 767277 ATCGTATAAAAAAAA CACCCTTTCTAAAA TCTC TTTTAAAATGGGTT CAGCGATCTTTTTTT TERM 686 767304 - 767277 - G 77 -6.4 -4.62054 | overlap 767275 CGTATAAAAAAAACA CCCTTTCTAAAA TCTC TTTTAAAATGGG TTCAGCGATCTTTTT hopE 768837 - 769658 + | outer membrane protein HopE TERM 687 769672 - 769660 - f 71 -7.7 -3.56821 | opp_overlap 769651 769660 769658 769656 769638, overlap 769651 ACTACACTTTTTAAA CCCTT TAA AAGGG TGTCTTTAAGCCCTT HPP12_0718 769839 - 770765 + | S-adenosyl-methyltransferase HPP12_0719 770786 - 771130 + | hypothetical protein TERM 688 771670 - 771649 - g 70 -2.9 -5.0925 | GCTGAAAACTAAAAA CGGCCAG TATTTCGT CTCGCCG GATAACGGCACGCTG HPP12_0720 771329 - 772231 + | hypothetical protein TERM 689 772221 - 772236 + F 74 -6.1 -4.59853 | opp_overlap 772220 TTGATATAAAGAAGT GCGCT AAGTAA AGCGC TTTTTAGAAAATTAA homB 772456 - 774465 + | outer membrane protein HomB HPP12_0722 774653 - 775873 + | hypothetical protein rpoN 777230 - 775986 - | RNA polymerase sigma-54 factor TERM 690 776070 - 776087 + g 70 -2.7 -5.10461 | overlap 776072 GGTGATTGTTCTTCT TACCATT TTCA AATGGAA TTTTTCTTCAATAAG TERM 691 777041 - 777066 + g 74 -4.8 -4.78764 | AATGATCGCTGCTCT TTTTAGCGCT AAAGCG ATCGCTAAAA TTTTTGATGCGTTTG HPP12_0724 777955 - 777233 - | ABC transporter ATP-binding protein HPP12_0725 778369 - 777968 - | hypothetical protein TERM 692 778043 - 778053 + g 78 -2.6 -5.47914 | AATAGCTAAATCGTA TTTT TTT AAAA TTTTTTCTAATTTTT dnaX 780096 - 778366 - | DNA polymerase III gamma and tau subunits TERM 693 779081 - 779097 + g 86 -9.5 -4.05629 | overlap 779090 ATCGCATCATCTAGG GCTTTGA GTT TCAAAGC TTCTTTGAATTTCAT TERM 694 779090 - 779106 + g 77 -8.1 -4.21922 | overlap 779081 TCTAGGGCTTTGAGT TTCAAAG CTT CTTTGAA TTTCATTTTCAATAA HPP12_0727 780796 - 780164 - | integral membrane protein TERM 695 780220 - 780204 - G 74 -6.5 -4.4448 | AAATCCCTAAATAAA GTAACGC TAA GCGTTCC CATGATAGCGGTTAC TERM 696 781181 - 781159 - g 85 -9.2 -4.15106 | opp_overlap 781162 781165 GAGGAACTTTTAAAA TTAGCAGGCA CTC TGCCTTCTAA TGAAGCGATTGATTA HPP12_0728 781060 - 781482 + | hypothetical protein TERM 697 781958 - 781934 - g 91 -7.9 -5.2166 | overlap 781936 GAACAAGGCAAAAAA GACCACGATCA CAA TGATCATGGTG AAGATAAAAAATAAA TERM 698 781956 - 781936 - g 89 -10.5 -4.21792 | overlap 781934 ACAAGGCAAAAAAGA CCACGATCA CAA TGATCATGG TGAAGATAAAAAATA HPP12_0729 781511 - 781972 + | hypothetical protein TERM 699 782019 - 782057 + F 76 -9.6 -2.80017 | opp_overlap 782026, overlap 782018 782033 CTTCAAATTCTTTAA GCAGAAATCCTAAACGCT TTT AGCGTTTGGGATAAATGC ATTCTGTTAAGCGTT TERM 700 782050 - 782026 - f 93 -11.5 -4.05446 | opp_overlap 782019 782018 782033 TTCTTTAAGCAGAAA TCCTAAACGCT TTT AGCGTTTGGGA TAAATGCATTCTGTT TERM 701 782222 - 782212 - f 72 -2.6 -5.22039 | TTGAAATCCAAAAAA TTTA TTG TAAA ATTAAACATATTGTA sabB 782345 - 784216 + | outer membrane protein SabB/HopO TERM 702 784350 - 784304 - T 85 -6.8 -5.29885 | opp_overlap 784313, overlap 784308 784309 AAGTCAAAAACAAAA TAAACCAAATTACCCAATTATC TTT GATAATTGGGTAATTTAAGAAA ATCGTTCAATACTCT TERM 703 784346 - 784308 - T 100 -16.4 -5.098 | opp_overlap 784313, overlap 784304 784309 CAAAAACAAAATAAA CCAAATTACCCAATTATC TTT GATAATTGGGTAATTTAA GAAAATCGTTCAATA TERM 704 784345 - 784309 - T 100 -17.7 -3.6222 | opp_overlap 784313, overlap 784308 784304 AAAAACAAAATAAAC CAAATTACCCAATTATC TTT GATAATTGGGTAATTTA AGAAAATCGTTCAAT TERM 705 784313 - 784341 + T 100 -16.3 -3.54919 | opp_overlap 784309 784308 784304 ACAAAATAAACCAAA TTACCCAATTATC TTT GATAATTGGGTAA TTTAAGAAAATCGTT ansB 785354 - 784356 - | L-asparaginase type II TERM 706 786445 - 786459 + G 74 -4.2 -5.14563 | opp_overlap 786445 TCATATAGATGAAAT CAAGCG ATA CGCTTC TTTTTTGATCGCAGA dcuA 785483 - 786814 + | anaerobic C4-dicarboxylate transport protein sabB_2 788759 - 786888 - | outer membrane protein SabB/HopO TERM 707 788882 - 788892 + r 72 -2.6 -5.22039 | TACAATATGTTTAAT TTTA CAA TAAA TTTTTTGGATTTCAA HPP12_0734 789944 - 789027 - | outer membrane protein TERM 708 789573 - 789563 - GR 76 -6.8 -4.36914 | TGGCTTGGGATAAAA GGGT ATT ACCC CCCACTTTTTGACCT TERM 709 789924 - 789905 - GR 78 -2.8 -5.41746 | opp_overlap 789894 789908, overlap 789908 AACTCGCTAAAAAAA TAAGCGCT TTCA AACGCTTT TTTGATTCAATTCTA TERM 710 789921 - 789908 - GR 72 -4.5 -4.79949 | opp_overlap 789894 789908, overlap 789905 TCGCTAAAAAAATAA GCGCT TTCA AACGC TTTTTTGATTCAATT TERM 711 789908 - 789921 + gr 73 -2.3 -5.29385 | opp_overlap 789908 789905, overlap 789894 TCGCTAAAAAAATAA GCGCT TTCA AACGC TTTTTTGATTCAATT HPP12_0735 790900 - 789914 - | transcriptional regulator TERM 712 790489 - 790500 + gr 89 -4.4 -5.56568 | AACCTAAACGCACTT TCAC GCTT GTGA TTTTTTTACTAGTGT HPP12_0736 792008 - 790992 - | tRNA(Ile)-lysidine synthetase TERM 713 791179 - 791155 - G 75 -8 -4.07568 | opp_overlap 791155 TTTTGGGGTTTAAAA GCGATAAAAA CATGC TCTTTATCGC TTTCAATGATGAATT TERM 714 791309 - 791297 - G 70 -3.3 -4.9218 | overlap 791298 TATCCACCATAAAAA GCGCA TTT TGCGA GCGTTGGAAAAAAGT TERM 715 791999 - 792041 + g 80 -7.8 -4.44974 | AGGGTTTAAAATCTC GCGCTATCAAATCGGTGT TAAACGC ATGCTGAATTGATGGCGC TTTTATGAAGTTTCC HPP12_0737 792823 - 792044 - | ATP/GTP binding protein TERM 716 792126 - 792145 + gr 79 -4.2 -5.24129 | TTCCTGAGTTTTTCC GCTTCATG CAAA CCTGGAGC TTTTTTGTGGACGGC TERM 717 792585 - 792567 - GR 78 -3.8 -5.26119 | overlap 792568 TTTCCAAAAACAAAA CGCATGAA ATT TTCTTGCA TATCTAAATATTCTT HPP12_0738 793110 - 792787 - | ATP/GTP binding protein HPP12_0739 793424 - 793119 - | hypothetical protein HPP12_0740 795229 - 793538 - | ATP/GTP binding protein TERM 718 793600 - 793611 + g 100 -5.8 -5.88061 | TTTCAAATTCTTGAT CGCA CTCT TGCG TTTTTTTAATTTTTT TERM 719 794613 - 794624 + g 86 -4.4 -5.47846 | ATGAGATCATTCAGT CGTT TTTG AACG TTTTCTTTTTTGATT TERM 720 794636 - 794646 + g 71 -4 -4.83722 | AACGTTTTCTTTTTT GATT TTA AATC TTTTGTTGTAATCTT HPP12_0741 796323 - 795226 - | hypothetical protein HPP12_0742 796967 - 796341 - | hypothetical protein HPP12_0743 798506 - 797187 - | 2-methylthioadenine synthetase gpt 798969 - 798508 - | xanthine-guanine phosphoribosyl transferase HPP12_0745 800087 - 798978 - | phosphoserine aminotransferase TERM 721 799291 - 799301 + g 76 -3.2 -5.25893 | ACGGCTTTTTGAGTG GCTA AAG TGGC TTTTTTAGTCTCTCT TERM 722 799557 - 799570 + g 71 -6.7 -4.06687 | opp_overlap 799556 ACTCCCACCAATGAG CGCAT CAAC ATGCG TTATTTCTAAAGGCT TERM 723 799646 - 799657 + g 85 -5.8 -5.24531 | GATTAGTTTCTTTGA TCGC TTGA GCGA TTTTTTCTACAGGGT TERM 724 800309 - 800299 - g 72 -3.2 -5.0538 | GGGTATTCTAAAAAA GCTC CTG GAAC GATAGGGAGTTTAGT pgpA 800236 - 800712 + | phosphatidylglycerophosphatase A TERM 725 800884 - 800894 + G 78 -2.6 -5.47218 | GTTAAAGGATAGGAT TAAA CAT TTTA TTTTTTTAGATGAAA ddlA 800789 - 801832 + | D-alanine:D-alanine ligase A TERM 726 802052 - 802042 - g 75 -5.4 -4.81083 | overlap 802044 CCCAACGATGAAAAA GTCT TAG AGAC TAAAGATTATGCTAA HPP12_0748 801832 - 802557 + | 2-hydroxy-6-oxohepta-2,4-dienoate hydrolase TERM 727 803706 - 803694 - g 78 -4.1 -5.29385 | AAGTGAATCAAAAAA TCATC ATA GACGA TAGCTTTAATGGGAA murF 802544 - 804025 + | UDP-murnac-pentapeptide presynthetase HPP12_0750 804035 - 804520 + | histidine triad (HIT) family protein prsA 804585 - 805541 + | phosphoribosylpyrophosphate synthetase rodA 806723 - 805602 - | rod shape-determining protein HPP12_0753 807309 - 806770 - | hypothetical protein TERM 728 807271 - 807285 + g 72 -3.6 -5.05606 | AGCTTTTTGAATCAG CAAGAA ATG TTTTTG TTTGTTTTTCTTAGC HPP12_0754 807988 - 807536 - | hypothetical protein HPP12_0755 808124 - 809107 + | pseudouridine synthase D HPP12_0756 809058 - 810317 + | fibronectin domain-containing lipoprotein TERM 729 810370 - 810389 + G 82 -4.2 -5.50723 | opp_overlap 810370 810372, overlap 810370 810372 TCCAAGCCTTTAGAA TACCCCTT AATA AGGGGGGA TTTTTGTTTTCATAG TERM 730 810386 - 810372 - g 75 -10 -3.224 | opp_overlap 810370 810370 810372, overlap 810370 CAAGCCTTTAGAATA CCCCTT AAT AAGGGG GGATTTTTGTTTTCA TERM 731 810951 - 810940 - g 89 -5.8 -5.37345 | TGGAATGAGAAAAAA CACC GCCG GGTG CTAAGCGAAAAATTT HPP12_0757 810328 - 811509 + | S-adenosylmethionine-dependent methyltransferase ftsE 811506 - 812177 + | cell division protein FtsE ftsX 812164 - 812970 + | cell division protein FtsX TERM 732 813152 - 813097 - g 83 -9.3 -4.1144 | gap 2 AAAAAACCAACTAAA CAGCCGTTTG-AGTTCTTTAG-GCGAA GCGA TCCGCTCTAAAGAGCTTCAAAAAGCTG AGATGGAGCGCCAAA TERM 733 813512 - 813492 - g 74 -4 -5.1101 | overlap 813493 GCAGCATTCAAAAAA TCTCATCT GTCAT AGATGAGC AAAAAATTCGTGAAG TERM 734 813574 - 813562 - g 73 -7.7 -3.84992 | AACCGAACAAGATAA GCTCA TTT TGAGC ATGCAAAAAGATTAT TERM 735 813916 - 813900 - g 71 -5.1 -4.59773 | overlap 813902 CGCTAGTGTCAAAAA CCCCAAA CGC TTTGGTG CGTAATGTTTTAGAC HPP12_0760 812963 - 814165 + | hypothetical protein flaG-2 814258 - 814617 + | polar flagellin TERM 736 814843 - 814801 - g 80 -2.1 -5.61881 | overlap 814803 814820 GTTGAAAAACAAAAA GCCCTTGTAGAAATTAAAA CGCTC CTTTCATCTCTAAAAGGCC CGGTTAAAACGCTTT fliD 814657 - 816714 + | flagellar hook-associated protein 2 fliS 816756 - 817136 + | flagellar protein FliS TERM 737 817244 - 817233 - g 81 -3 -5.69793 | AGAGCAAATAAAAAA TCTA GATT TAGA CACGCTTTTAAGCCT HPP12_0764 817123 - 817362 + | hypothetical protein moeB 817416 - 818075 + | molybdopterin biosynthesis protein HPP12_0766 818101 - 818244 + | hypothetical protein TERM 738 818831 - 818817 - g 90 -3.5 -5.87996 | TAATGAAGAAAAAAA GCGTC AGCAA AACGC ATGGGAGACTATCCA HPP12_0767 818248 - 819126 + | carbon-nitrogen hydrolase TERM 739 819189 - 819213 + F 90 -11.6 -3.72037 | opp_overlap 819205, overlap 819183 819203 819204 CATGGTAGGTGTAGT TTTTTGCGCT AAACA AGCGCAAAAA TTCTATCATTTTTGC TERM 740 819230 - 819205 - f 93 -10.6 -3.90744 | opp_overlap 819189 819183 819204 819203 TTTTGCGCTAAACAA GCGCAAAAAT TCTATC ATTTTTGCGC AGTATTTTCATTTTA HPP12_0768 819259 - 820572 + | permease/na-h antiporter HPP12_0769 820635 - 821888 + | DNA-damage induced multidrug efflux protein HPP12_0770 823478 - 821889 - | hypothetical protein HPP12_0771 823980 - 823378 - | hypothetical protein HPP12_0772 824144 - 824701 + | hypothetical protein ftsY 824707 - 825588 + | cell division protein FtsY HPP12_0774 826269 - 825655 - | hypothetical protein TERM 741 825986 - 825962 - GT 76 -7.9 -4.07568 | opp_overlap 825950 CCGGCTTTTTGAAAA TCACCAAGC TCCTTTT GCTTGGCGA TCCGAGATTCCAAAC HPP12_0775 826546 - 826049 - | hypothetical protein HPP12_0776 826695 - 826543 - | hypothetical protein moaA 827760 - 826795 - | molybdenum cofactor biosynthesis protein A TERM 742 827042 - 827021 - G 71 -5.2 -4.62302 | CAAGATTGGCAAAAA TCATCGCT ATGCGG AGCGATAA TGCCAAATTGATAGC HPP12_0778 827847 - 828452 + | molybdopterin-guanine dinucleotide biosynthesis protein A TERM 743 829392 - 829379 - g 73 -2.3 -5.23292 | opp_overlap 829379 829380, overlap 829374 TTATAGAAAATAAAA CGCTC GCCA GAGAG CTTTATAAAGATGTG flhB-1 828445 - 829521 + | flagellar biosynthetic protein HPP12_0780 830353 - 829616 - | hypothetical protein amiA 831703 - 830372 - | N-acetylmuramoyl-L-alanine amidase TERM 744 831125 - 831138 + g 74 -3.9 -5.04249 | overlap 831136 ACTTTCATTTTCTGC TTCTT TTTT AAGAA TTTCTTTTTTAAGAA TERM 745 831136 - 831157 + g 76 -4.5 -5.03715 | opp_overlap 831140, overlap 831125 831140 CTGCTTCTTTTTTAA GAATTTCTT TTTT AAGAATTTC TTTTTTAGCGCTCCT TERM 746 831140 - 831153 + g 74 -3.9 -5.04249 | opp_overlap 831140, overlap 831136 TTCTTTTTTAAGAAT TTCTT TTTT AAGAA TTTCTTTTTTAGCGC TERM 747 831234 - 831245 + g 72 -4.4 -4.69464 | GGCGTTTTTTCTTTG GTCT CTTT AGAC TTTTTAGCCTCTTTT HPP12_0782 832801 - 831710 - | flavin-containing oxidoreductase tyrS 834026 - 832818 - | tyrosyl-tRNA synthetase TERM 748 833653 - 833666 + g 81 -6.7 -4.80882 | opp_overlap 833652 833653 CAAGTGGAATTAAAG CACAC TTCG GTGTG TTTTTCATCTAAAAT spoT 836377 - 834050 - | penta-phosphate guanosine-3'-pyrophosphohydrolase TERM 749 834580 - 834561 - G 74 -4.4 -5.00616 | overlap 834570 TTTGGGGTTAAAAAA TTCAAAAC ATTG GTTTTAAA ACCCAAATACCTTAA TERM 750 835581 - 835569 - G 71 -6.9 -4.0777 | opp_overlap 835569 AGATAAATAGAATAA GGGCG TTT CACCC TTGTAACGAGTTTAA HPP12_0785 836588 - 836364 - | RNA polymerase omega chain pyrH 837352 - 836630 - | uridine 5'-monophosphate kinase TERM 751 836943 - 836933 - G 84 -8.2 -4.66163 | ATCCGTAGTGAAAAA CGGG TTT CCCG TGCCAGCACCAAAAA HPP12_0787 838138 - 837455 - | hypothetical protein TERM 752 837843 - 837858 + g 73 -5.4 -4.55295 | opp_overlap 837856, overlap 837839 837856 AGAACTTTAGAGAGG GCGTTT GAAG AAGCGC TTTCTTTATCAAAAG TERM 753 837856 - 837875 + g 72 -3.6 -5.08824 | opp_overlap 837856, overlap 837843 837839 GGGCGTTTGAAGAAG CGCTTT CTTTATCA AAAGCG TTTTTTGCATCCACA TERM 754 840182 - 840171 - g 81 -5.8 -5.04385 | GAGACTTTGAAAAAA CGCA AAGA TGCG ATGCAAGCTTGGGTG acnB 838269 - 840827 + | aconitase B TERM 755 840840 - 840860 + F 73 -6.9 -4.00868 | overlap 840845 TAGTTTTGTTTTCAT TAAAAGGGG CGA TCCCTTTTG TTTAATTATGGCTGA TERM 756 840845 - 840855 + F 76 -4.6 -5.02357 | overlap 840840 TTGTTTTCATTAAAA GGGG CGA TCCC TTTTGTTTAATTATG TERM 757 841050 - 841032 - g 77 -5.3 -4.97383 | ATTTAAAAAAAATAA TCAGTGC GCAAA ACACTGA GATCAACAATTTAAG HPP12_0789 840908 - 841174 + | hypothetical protein TERM 758 842368 - 842388 + G 73 -8.3 -3.65353 | opp_overlap 842368 842366, overlap 842348 ATTCTTTCTCAAATA GGGCTTTTA GAA TACAAGCCC TTTAAAATCCTTTCC TERM 759 842388 - 842368 - g 70 -8.3 -3.34517 | opp_overlap 842348 842368, overlap 842366 ATTCTTTCTCAAATA GGGCTTTTA GAA TACAAGCCC TTTAAAATCCTTTCC TERM 760 842627 - 842617 - g 74 -4 -5.0538 | opp_overlap 842617 CCGCATTTTAAAAAA TCTT TTC AAGA GAGTTTAGAAGACAA HPP12_0790 841441 - 842730 + | hypothetical protein TERM 761 842981 - 842971 - g 71 -6.8 -3.96618 | CTCAATTCCAAAGAA GGGA TTT TCCC TACAGCCACTTTTGT TERM 762 844139 - 844129 - g 73 -6.8 -4.15222 | AGCCCTTTTAATAAA GCCT TTA AGGC GAACACACAAGACAG hofE 842824 - 844191 + | outermembrane protein HofE TERM 763 844245 - 844221 - T 75 -10.1 -2.59431 | opp_overlap 844205 844221 GCTTGGTAGAATTGA GCCATTGTTTT TGG AAATCAATGGC TTTTCTCAATTCGGC TERM 764 844221 - 844245 + T 100 -10.1 -4.4715 | opp_overlap 844221, overlap 844205 GCTTGGTAGAATTGA GCCATTGTTTT TGG AAATCAATGGC TTTTCTCAATTCGGC HPP12_0792 844725 - 844198 - | hypothetical protein TERM 765 844488 - 844505 + g 70 -2.7 -5.14965 | GCTTAGGCTCTAAAA TCAAGCG CAAA TGTTTGA TTTTTTCATGCAAAT TERM 766 844694 - 844684 - G 91 -8.2 -5.18371 | GCTCACAAAATAAAA GGGC AAC GCCC ACCTTCTAAAACGAG lolA 845762 - 845208 - | outer membrane lipoprotein carrier protein LolA TERM 767 846931 - 846943 + G 74 -9.1 -3.55444 | GGCGCTTTAGTGAGG GCCTG CAT CAGGC TTTAGAGGCTAAAGA secA 845910 - 848507 + | preprotein translocase SecA subunit lolE 848497 - 849729 + | lipoprotein release system transmembrane protein LolE hofF 850011 - 851510 + | outer membrane protein HofF TERM 768 851527 - 851537 + T 71 -6.8 -4.15044 | opp_overlap 851527 CCCCTTTAATAACAA CCCT TTA AGGG TTTGTTAAAACGCCC TERM 769 851837 - 851852 + T 82 -9 -3.89937 | TTTCAAGAGGCTATC GCTTGC TTAC GCAAGC TCTTTGTTATTTAGT hsdS-2 853141 - 851843 - | type I R-M system S protein TERM 770 851903 - 851918 + g 70 -2.6 -5.07107 | CAGTAGTTTTTCTCG GTAATA TTCG TATTGC TTTTTTCGGGCTTTA TERM 771 852194 - 852156 - G 70 -8.5 -3.33419 | gap 1, opp_overlap 852159 852162, overlap 852150 852159 852183 852184 852188 ATGTCTAAAGCAAGA TCA-CAATTCGCTTTTTT GCTT AAAAAAGTGAATTGTTGA TTCGCTAACGAATCA TERM 772 852190 - 852159 - G 73 -10.4 -2.83396 | opp_overlap 852159 852162, overlap 852156 852150 852183 852184 852188 TCTAAAGCAAGATCA CAATTCGCTTTTTT GCTT AAAAAAGTGAATTG TTGATTCGCTAACGA TERM 773 852159 - 852190 + g 87 -12.6 -3.37344 | opp_overlap 852156 852150 852159 852183 852184 852188, overlap 852162 TCTAAAGCAAGATCA CAATTCGCTTTTTT GCTT AAAAAAGTGAATTG TTGATTCGCTAACGA TERM 774 852162 - 852187 + g 77 -8.5 -3.82604 | opp_overlap 852159 852156 852150 852183 852184, overlap 852159 AAAGCAAGATCACAA TTCGCTTTTTT GCTT AAAAAAGTGAA TTGTTGATTCGCTAA TERM 775 852218 - 852183 - G 77 -4.8 -5.00616 | opp_overlap 852162 852159, overlap 852159 852156 852150 852184 852188 852208 TTTTTGCTTAAAAAA GTGAATTGTTGATTCG CTAA CGAATCAACGATTAAA AGGGCATGCTCTCCT TERM 776 852217 - 852184 - G 72 -8.3 -3.60048 | opp_overlap 852162 852159, overlap 852159 852156 852150 852183 852188 852208 TTTTGCTTAAAAAAG TGAATTGTTGATTCG CTAA CGAATCAACGATTAA AAGGGCATGCTCTCC TERM 777 852213 - 852188 - G 74 -9.1 -3.52177 | opp_overlap 852159, overlap 852159 852156 852150 852184 852183 852208 GCTTAAAAAAGTGAA TTGTTGATTCG CTAA CGAATCAACGA TTAAAAGGGCATGCT TERM 778 852940 - 852952 + g 70 -2.7 -5.07011 | AGCTTTTACTCGCTT GATAA ATA TTGTC TTTTTCGTTTGTATA TERM 779 853116 - 853131 + g 73 -5.4 -4.54477 | opp_overlap 853091, overlap 853118 TTAGGCGCTAGAGTG TGGAGC AGTC GCTCTA TTTTATGCATTTTGC HPP12_0798 855242 - 853182 - | cadmium-transporting ATPase TERM 780 853315 - 853295 - G 84 -6.9 -4.93296 | overlap 853296 CTAGCACGATAAAAA CCGCTTTAA TCC CTAAAGCGA ACAAGATATTTTGCC TERM 781 855135 - 855152 + g 70 -2.7 -5.06451 | AAGCAACTTACTGGT GCTGAAA TTGA TTTGAGC TTTTTTCACATAGTC HPP12_0799 856787 - 855267 - | sigma-54 interacting protein TERM 782 855631 - 855642 + g 70 -3.6 -4.9218 | opp_overlap 855629, overlap 855635 CTGTCTAAAAAAGGC TCGC TCAA GCGG TTTTTATACTGCGTG TERM 783 855876 - 855863 - G 84 -2.4 -5.86965 | opp_overlap 855874 ATTCATCAAAAAAAA GCAT GCCGTT ATGC GCTAGCGCGATTTCG TERM 784 856235 - 856253 + g 73 -2.4 -5.22312 | CTTTATCGTTCAACT CTATCGTT TTA AAGGGTAG TTTTTTCGTGTGGGT def 857317 - 856793 - | polypeptide deformylase TERM 785 856872 - 856858 - G 73 -7.2 -4.09685 | TCTTACGCTTCAAAA TGGATA ATT TATCCA CGAATAACACACCAT clpP 857909 - 857322 - | ATP-dependent clp protease proteolytic component tig 859285 - 857930 - | trigger factor TERM 786 858211 - 858201 - G 73 -5.4 -4.5442 | opp_overlap 858201 GCGTCAATGATAAAA GTGA TTT TCAC GCTTTTTGTCGCATC TERM 787 858347 - 858374 + g 80 -7.8 -4.37534 | CATTTCTTGCTCTAT GATCGTTTTAGG CAAA TCAAAAACGATC TTTTCATCTAAATTT horG 860233 - 859397 - | outer membrane protein HorG TERM 788 859879 - 859866 - G 73 -2.3 -5.30448 | opp_overlap 859866 AAAGAAATATAAAAA CGCAA ACCA TAGCG CTCTTTTTTAGGAAA hpaA 861044 - 860262 - | flagellar sheath adhesin HpaA TERM 789 860828 - 860844 + g 72 -9.5 -3.02511 | overlap 860830 TGTTTTCATACTCTT TAGCGAT GTT ATCGCTA TATTGAAAAGCTGGC TERM 790 860990 - 861002 + g 72 -3.3 -5.08824 | overlap 860991 AAGCCACCACGCTCG CGCCT AAA AGGCA TTTTTTCCATGCAAA moaC 861639 - 861163 - | molybdenum cofactor biosynthesis protein C mog 862178 - 861648 - | molybdopterin biosynthesis protein moaE 862628 - 862191 - | molybdopterin converting factor subunit 2 ribA 863509 - 862931 - | GTP-cyclohydrolase II TERM 791 863404 - 863385 - G 74 -5 -4.82901 | overlap 863401 GGGTTTTGAGAAAAA TTAGGGGT GAAA ACCACTAA ATGATCTTTAGAGCC HPP12_0809 864438 - 863599 - | hypothetical protein TERM 792 864362 - 864342 - G 77 -8.3 -3.90086 | opp_overlap 864342, overlap 864336 AAATAATAACGCAAA CCATCCAAA TCT TTTGGAAGG TTTTTAGGAATATTT TERM 793 864342 - 864362 + g 87 -8.3 -4.62904 | opp_overlap 864336 864342 AAATAATAACGCAAA CCATCCAAA TCT TTTGGAAGG TTTTTAGGAATATTT HPP12_0810 865559 - 864525 - | bifunctional 3,4-dihydroxy-2-butanone 4-phosphate (DHBP) synthase / GTP cyclohydrolase II TERM 794 864757 - 864747 - G 72 -3.2 -5.07107 | TAAAGCCTTAAAAAA CGCT TCA AACG CACCAGTCGTTAAAA TERM 795 864790 - 864775 - G 70 -2.6 -5.02074 | overlap 864781 CCAGTCGTTAAAAAA TCAAAA TCCT CTTTGA TAGGATGGAAACGCA HPP12_0811 866478 - 865642 - | lipopolysaccharide biosynthesis protein HPP12_0812 866560 - 867180 + | metalloprotease HPP12_0813 869570 - 867192 - | iron(III) dicitrate transport protein TERM 796 869632 - 869618 - R 73 -4.4 -4.96762 | TACATACTACAAAAA TAATTA TTA TAATTA ACTTAAATTTTGAAG acpS 870129 - 869773 - | holo-acp synthase TERM 797 870078 - 870053 - G 83 -4.8 -5.24129 | opp_overlap 870075 870076, overlap 870076 CTTGGGGATAAAAAA CGCTCTAAAA ACCTCA TTTCAAAGCG TTTCACGCACTTTTC fliL 870687 - 870136 - | flagellar biosynthesis protein HPP12_0816 871298 - 870696 - | N-6 adenine methyltransferase HPP12_0817 871603 - 871277 - | hypothetical protein TERM 798 871370 - 871400 + g 82 -4 -5.48787 | overlap 871364 871393 871395 GATTTCTTCGCAAGG TTTTTTGCTCGCTT TTA AAGCGCGATAAAAA TTTTTTATATCTTCT TERM 799 871607 - 871597 - G 78 -2.6 -5.47159 | overlap 871591 TGCAAGAAAGAAAAA TTTT CAA AAAA CCTCCTTTATCCTAT TERM 800 871728 - 871702 - R 70 -3.8 -4.88295 | overlap 871705 AAATAAACTTAAAAA GTATTTCATTTT ATA AAAAAGAAAAAC AGAATGTTAAAAATA HPP12_0818 872962 - 871958 - | hypothetical protein TERM 801 872203 - 872187 - G 78 -3.7 -5.33405 | CGCACCAAAGAAAAA TTGACAT CAT AAGTCAA ATCGCTTTGCTGATA TERM 802 872483 - 872506 + g 71 -7.6 -3.81951 | GCCCTTATAATCATG GGTAATAAAA AGCA TTTTGTTACC TTTAATGATCTCGCA HPP12_0819 873096 - 873713 + | hypothetical protein TERM 803 874043 - 874075 + G 74 -6.4 -4.46212 | opp_overlap 874050 874067 AGAACGCTTTAAGGC TCATAACGCTCTTT CTCTC ATAGAGCCTTATGA TTTTATCATAGACGC TERM 804 874211 - 874227 + G 80 -6.5 -4.72272 | CGTTTTACCCCATAG CGCATGC TTA GCGTGTG TTTTTGATAAGCCCC TERM 805 874451 - 874405 - g 76 -2.4 -5.44119 | gap 1, opp_overlap 874421, overlap 874390 874410 874413 874421 TGGATTTTAAAAAAA TTCAAGCAC-CCAAAAACCCT GAATGT AGGGTTTGTGGCACGCATAAA ATCACGCATTTACAG HPP12_0820 873714 - 874481 + | thiamine biosynthesis protein TERM 806 874951 - 874980 + G 86 -12.2 -3.34233 | overlap 874934 874941 AGACGGCCGGTGAGA CCGCTCCTACTA TGGGGT TAGTGGGGGCGG TTATGGGGCTTATGC motA 874497 - 875270 + | flagellar motor rotation protein MotA TERM 807 875740 - 875726 - g 75 -5.6 -4.7329 | opp_overlap 875725, overlap 875728 AAAATCATTCAAAAA CTCCCT AAA AGGGTG CATATTAATGTGAGA motB 875273 - 876046 + | flagellar motor rotation protein MotB HPP12_0823 876043 - 876489 + | hypothetical protein HPP12_0824 876548 - 876694 + | osmoprotection protein TERM 808 876736 - 876750 + F 85 -8.6 -4.12942 | GGTTCTCACTCTGTG TCCCTA TAG TAGGGA TTTTACAGAGTTTGA TERM 809 878131 - 878149 + G 76 -7.5 -4.17089 | overlap 878125 CTTTTAAGGGCTTAG TGAAAGC TTATC GCTTTCA TTTTAGAAGTTTGCA proWX 876936 - 878486 + | osmoprotection protein TERM 810 878665 - 878655 - g 71 -6.8 -4.08216 | opp_overlap 878636 TTAGGGCTTTTAAAA CCCA GTT TGGG GAGCGTTAAAATCTT TERM 811 879148 - 879106 - g 74 -4.3 -4.88067 | gap 1, overlap 879120 AGTTAGCCACAAAAA CCCTAGAAATCAAAGCCCTT AAAT AAGAGCAATGATTT-TAAGG CTCGTTTAAAAATTC proV 878490 - 879131 + | osmoprotection ABC transporter HPP12_0827 879314 - 879775 + | hypothetical protein TERM 812 880518 - 880541 + G 76 -3.2 -5.2197 | gap 1 TCACTTGCATGGATT TGGCCAAACTC TAC GA-TTTGGACA TTTTTGCTTTTTATG TERM 813 880901 - 880890 - g 89 -5.8 -5.4833 | opp_overlap 880889 TTAGCCAAGAAAAAA CCTC TAAT GAGG ATCTGATTTTAGAAG uvrC 879776 - 881560 + | excinuclease ABC subunit C hom 881571 - 882836 + | homoserine dehydrogenase HPP12_0830 882837 - 883181 + | hypothetical protein trxA 883270 - 883590 + | thioredoxin TERM 814 883663 - 883679 + G 90 -8.7 -4.86731 | opp_overlap 883661 TTACGCCACTAGAGG CGGTGTT AAA AACGCCG TTTTGTTTGAAAAAG TERM 815 884101 - 884124 + G 71 -6 -4.2349 | opp_overlap 884101 CATCTGCAAAAAAGT CTATCTCATC CACA GAAGAGATGG TTTTAGGTGTGCGCC trxB-1 883595 - 884530 + | thioredoxin reductase TERM 816 884568 - 884538 - f 77 -9.9 -3.12923 | opp_overlap 884539 884546, overlap 884533 884536 884546 ACCATTAAAATTATA GCTTATAACCCTA GATTT TAGGGTTATAAGT TCTCGCTTCAAACAT TERM 817 884539 - 884567 + F 100 -14.1 -3.41878 | opp_overlap 884533 884538 884536 884546, overlap 884546 CCATTAAAATTATAG CTTATAACCCTAG ATT TTAGGGTTATAAG TTCTCGCTTCAAACA TERM 818 884612 - 884622 + F 70 -4.6 -4.65916 | overlap 884613 TAAAACTTTTTGTAG CCGT GAT GCGG TTTTATTCGCATGGC TERM 819 884690 - 884680 - f 86 -2.6 -5.89947 | CAAATTTAAAAAAAA TTTA TTG TAAA ACAGAGTCTAAAAAC HPP12_0833 884741 - 885562 + | beta-1,4-galactosyltransferase HPP12_0834 886031 - 885783 - | RNA-binding protein atpB 887034 - 886354 - | ATP synthase F0 subunit A TERM 820 887068 - 887086 + r 85 -9 -4.10429 | opp_overlap 887082 887083, overlap 887083 CTTATTGAAAATTTC CTTAATTG TAG CAATTAAG TTTTAAAAACTCATT guaB 888601 - 887156 - | inosine-5'-monophosphate dehydrogenase TERM 821 887195 - 887208 + g 79 -6.7 -4.64861 | TTTAGTAATATCCAC GCCAT GCAC ATGGC TTTCTTTTAACCCCG gatA 889972 - 888611 - | glutamyl-tRNA(Gln) amidotransferase subunit A TERM 822 889392 - 889378 - G 85 -7.2 -4.87803 | opp_overlap 889377 889380 TAGCGTCAAATAAAA TAGAAG CGT CTTCTA CATTTTGCGTGATAG TERM 823 889597 - 889607 + g 72 -3.2 -5.00895 | CCCCGCTACTCCCTC CAGG CAC TCTG TTTTTATCTCGTGGG HPP12_0838 890621 - 890031 - | dephospho-coa kinase TERM 824 890108 - 890120 + g 74 -4.7 -4.86133 | TGTCTATAATGTAAT CGCTC ATG GCGCG TTTTTGCTCTATATC speE 891411 - 890623 - | spermidine synthase TERM 825 891224 - 891236 + g 76 -9.1 -3.70902 | opp_overlap 891224 CAACCCCCCATATGA GCGAG CAA CTCGC TTTCAATATGCAAAA HPP12_0840 892381 - 891503 - | hypothetical protein TERM 826 893563 - 893548 - g 77 -6.2 -4.59117 | opp_overlap 893547 893548 AAATCAAGCATAAAA TCATAG AAGT CTATGA GTGTTTTTCCAAACG HPP12_0841 892458 - 893846 + | GTP-binding protein-like protein HPP12_0842 893987 - 894271 + | histone-like DNA-binding protein hu TERM 827 894516 - 894502 - f 70 -3.6 -4.93365 | TTTTATAATTAAAAA GATCTT GCA AAAATC AAGCCATAATCTCTT HPP12_0843 894873 - 895478 + | hypothetical protein HPP12_0844 895508 - 896125 + | hypothetical protein TERM 828 896114 - 896104 - f 76 -6.8 -4.57218 | AGAAGATAATGAAAA CGCT GAT AGCG AGCTCCAATGAAAAA ompP1 896122 - 897885 + | outer membrane transport protein P1 HPP12_0846 897889 - 898890 + | bifunctional UDP-glcnac C6 dehydratase / C5 epimerase TERM 829 900151 - 900133 - g 71 -6.8 -4.1196 | AAGCGAGCTTTAAAA TCCTTGAT TTT ATCAAAGA CAACGCCCTTTAATG dfp 898887 - 900164 + | pantothenate metabolism flavoprotein TERM 830 900694 - 900671 - g 80 -4.6 -5.22943 | opp_overlap 900671 ATGAAAGCCAAAAAA CAAAGCGT TGATTTTT ACGCTCTG TATCCTAACTTGGGC HPP12_0848 900164 - 900901 + | hypothetical protein hsdS-3 901447 - 900914 - | type I R-M system S protein hsdM-2 903023 - 901440 - | type I R-M system M protein TERM 831 901700 - 901710 + g 79 -6.8 -4.63592 | TCTTTTCTCGGTTGC GCTC TTT GAGC TTGTTTTTCTTGCCC HPP12_0851 903199 - 903885 + | integral membrane protein TERM 832 903879 - 903889 + T 84 -6.8 -5.07567 | opp_overlap 903878 ACGCCCTTATAAAGC CGCT TAA AGCG TTTTTTAAAATCTCA HPP12_0852 904277 - 903909 - | hypothetical protein TERM 833 904022 - 904032 + gT 71 -4 -4.87665 | TTTTTAAAAAACCGC TGAA TTT TTCA TTTTTGTCGCTAAGC HPP12_0853 904852 - 904214 - | hypothetical protein HPP12_0854 906450 - 904849 - | ABC transporter ATP-binding protein TERM 834 905381 - 905364 - G 83 -9.1 -3.97406 | opp_overlap 905363 CTAAAATTTTACAAA GCGTGGA TTTA CCCACGC CGTTTGGCCCTATGA HPP12_0855 906619 - 907626 + | guanosine 5'-monophosphate oxidoreductase in purine nucleotides salvage HPP12_0856 907772 - 907623 - | hypothetical protein gmhA 908322 - 907744 - | phosphoheptose isomerase waaE 909700 - 908315 - | ADP-heptose synthase TERM 835 909290 - 909322 + g 71 -6.5 -4.17914 | overlap 909287 909291 GATAACGCCATCTAT TTCTTGGATTTTTTC TGT GAAAAAATCTAAAAG TCTTTTTCTTAAATC TERM 836 909543 - 909529 - G 85 -2.9 -5.71712 | CCCCACATAAAAAAA CTTTA GCTTT TAAAG AAATGAGATTATTAG HPP12_0859 910689 - 909697 - | ADP-L-glycero-D-mannoheptose-6-epimerase TERM 837 910234 - 910251 + g 73 -7.7 -3.93038 | gap 1 AGGGCTTTCGTTTTT GCCCACCA CAT TGG-GGGC TTTGGTGTTGCCATA HPP12_0860 911220 - 910699 - | histidinol phosphatase HPP12_0861 911950 - 911210 - | hypothetical protein TERM 838 911435 - 911420 - G 76 -6.8 -4.47707 | overlap 911421 CCCCATTAAAAACAA CGGCAC GCTA GTGCCA AGCCCAAAAGAAAGG HPP12_0862 912612 - 911941 - | pantothenate kinase TERM 839 912189 - 912206 + g 85 -4.1 -5.61596 | ATGCTTTGAAAGGTT GCTCTAA AATT TTAGCGC TTTTTTTATACGCAT HPP12_0863 914242 - 912617 - | hypothetical protein HPP12_0864 914903 - 914247 - | hypothetical protein TERM 840 914454 - 914476 + g 70 -2.6 -5.00884 | overlap 914441 CACTTCTTGTAAAGC GCTCATTTCT TTA AGAATGGGGC TTTTTTCAAGCAGGT dut 915337 - 914900 - | deoxyuridine 5'-triphosphate nucleotidohydrolase greA 915821 - 915327 - | transcription elongation factor TERM 841 915642 - 915656 + g 93 -10 -4.72696 | overlap 915647 TAAATCCACGATTCT CGCTTC AAT GAAGCG TTGTTTTTCTTTAGC TERM 842 915647 - 915659 + g 78 -4.1 -5.27335 | overlap 915642 CCACGATTCTCGCTT CAATG AAG CGTTG TTTTTCTTTAGCGGC lpxB 916944 - 915862 - | lipid A disaccharide synthetase HPP12_0868 917405 - 916944 - | hypothetical protein hypA 917765 - 917412 - | hydrogenase nickel incorporation protein flgE-1 919980 - 917824 - | flagellar hook protein TERM 843 920138 - 920116 - R 73 -7.6 -3.89305 | overlap 920114 ATTCACAAATAAATA GGGGGTTTTG TAA CACCACCCCC ATAACGCTTTTTAAA cdh 920921 - 920187 - | cdp-diglyceride hydrolase TERM 844 920998 - 921012 + H 72 -5.8 -4.34771 | overlap 920988 920986 AGCGGTTAAAATCTT TAATCA TTA TGATTA TTTTAATAAATTTTA phnA 921273 - 921602 + | alkylphosphonate uptake protein TERM 845 921638 - 921661 + T 77 -5.4 -5.00884 | GTGAGAAAAGCTTAG TGACTTTTTA AGCT TATAAAGTCA TTTTTTAGAAAAAAT HPP12_0873 921874 - 921659 - | hypothetical protein HPP12_0874 922834 - 921959 - | hypothetical protein TERM 846 922965 - 922943 - R 89 -8.5 -4.33258 | overlap 922957 ATTTTGAAAGACAAA GCGTTCCTA AAAAA TAAGAACGC TTAAAGAAAAGGGTT TERM 847 922971 - 922988 + r 83 -4.9 -5.39721 | opp_overlap 922971 ATAAGAACGCTTAAA GAAAAGG GTTA CTTTTTC TTTTTTGTGTGGTGC katA 924496 - 922979 - | catalase TERM 848 924707 - 924680 - H 86 -8 -4.8245 | opp_overlap 924678 924680 AATAAAAATAAGAAA GATTAAAAACAA AATT TTATTTTTAATC TAGTTTTAATAATAA frpB-1 924819 - 927194 + | iron-regulated outer membrane protein ruvC 927668 - 927195 - | holliday junction endodeoxyribonuclease TERM 849 928038 - 928027 - g 84 -2.2 -5.79588 | CCAAAATGAAAAAAA TCCG GGAA CAGA AATGAAAATCTTCAC HPP12_0878 927800 - 928525 + | hypothetical protein TERM 850 928916 - 928930 + T 82 -4.3 -5.56263 | TCATTTCCTGACTTC CTTGA CTTTT TCAAG TTTTTGTTTTATCAT TERM 851 928966 - 928977 + T 70 -4.4 -4.7173 | overlap 928948 928947 TGGTGGCCCACTCAT TGCT TTTT AGCA TTTTTAGCTATCCTG TERM 852 929497 - 929487 - T 74 -5.4 -4.82154 | AACCCATACTAAAAA CACT TTG AGTG TGCCAATAGACCCTG HPP12_0879 930559 - 929714 - | hypothetical protein ruvA 931140 - 930589 - | holliday junction DNA helicase HPP12_0881 933010 - 931166 - | hypothetical protein TERM 853 931740 - 931764 + g 80 -7.9 -4.44046 | opp_overlap 931761 AAATACAGCTTGTTA TCGCTTTTGAG CTT TTCTAAAGCGA TTTCTTTCGCATAGA TERM 854 932186 - 932216 + g 82 -6.2 -4.96657 | overlap 932190 CATTTTAACCCCTTG TAAGGCTTTGGAGT AAT ACACTAAAGCGTTA TTTTCTTCTCTTTCT TERM 855 933633 - 933620 - g 80 -2.3 -5.63517 | opp_overlap 933620 TTTCTAAAGAAAAAA CGCAT TTAG AAGCG TTGTACTATTTGAGC TERM 856 934042 - 934062 + G 87 -3.2 -5.86061 | opp_overlap 934037, overlap 934045 CAGGATCTAATCTTA CAACGCTT GCAAA AGGCGTGG TTTTTTTTGGTGGGG mviN 933103 - 934563 + | virulence factor MviN protein cysS 934564 - 935961 + | cysteinyl-tRNA synthetase TERM 857 937659 - 937649 - g 72 -4.6 -4.81551 | opp_overlap 937649 TACGGATACCAAAAA CGGC ACA GCCA CTTTTAATAACGATA vacA 936186 - 940076 + | vacuolating cytotoxin VacA TERM 858 940121 - 940103 - T 95 -13.2 -3.54307 | opp_overlap 940103, overlap 940090 AATACCGCTCTTAAA CCCATGCT CAA AGCATGGG TTTGAAATCTTACAA TERM 859 940103 - 940121 + T 95 -13.2 -3.66803 | opp_overlap 940103 940090 AATACCGCTCTTAAA CCCATGCT CAA AGCATGGG TTTGAAATCTTACAA fecE 940909 - 940142 - | iron(III) dicitrate ABC transporter FecE fecD 941889 - 940909 - | iron(III) dicitrate ABC transporter FecD TERM 860 941512 - 941502 - G 71 -6.8 -4.11692 | TATTCATCGCCAAAA CAGC AAG GCTG GCCAAAATCGCCCCA HPP12_0887 942736 - 941882 - | short-chain oxidoreductase TERM 861 942310 - 942293 - G 73 -5.5 -4.59853 | GTAATGGCCTAAAAA GAGCATG CTCA CACGCCC CGCTATGGAAGAAAG TERM 862 942699 - 942711 + g 79 -4.8 -5.16969 | GCCCCAGTGATAATT GCCA CCTTT TGGC TTTCTTTTTTCTCTC TERM 863 942826 - 942843 + H 71 -5.7 -4.57341 | ATATAGTTCTTGGAA TGTTTTT TACA AAAAACA TTTTTAACACCAATT HPP12_0888 942876 - 943400 + | acyl coenzyme A thioesterase HPP12_0889 943830 - 943567 - | hypothetical protein TERM 864 943745 - 943758 + gT 74 -3.9 -5.09426 | opp_overlap 943739 943735 943736 943745, overlap 943736 AGCAATTTATCAAAA TCTTT TTGA AAAGA TTTTTTAAGGTTGAG HPP12_0890 944137 - 943763 - | hypothetical protein TERM 865 944295 - 944279 - R 89 -3 -5.94713 | opp_overlap 944293 944293, overlap 944293 944294 ACCCCACAAAAAAAA GAGTTT AAAAG AAACCC CTTAACAAGGGAGTT TERM 866 944307 - 944293 - R 80 -6.4 -4.67651 | opp_overlap 944293 944293, overlap 944279 944294 AGAGTTTAAAAGAAA CCCCTT AAC AAGGGA GTTTAAGAAAAGAGA TERM 867 944476 - 944453 - R 71 -6.7 -4.19879 | overlap 944457 ACAAAAGCCTTAAAA GAAACCCCC AAAAAA GGGAGTTCC ACAAAGGGATTTAAG babA 946729 - 944495 - | outer membrane protein BabA TERM 868 946194 - 946205 + g 72 -4.4 -4.6902 | TGGAGGATTTGATAG GCTT CGTT AAGC TTTTTGAAATTCTCA HPP12_0893 947948 - 947676 - | hypothetical protein HPP12_0892 947152 - 947823 + | hypothetical protein hypD 949027 - 947915 - | hydrogenase expression/formation protein HypD hypC 949281 - 949045 - | hydrogenase expression/formation protein HypC TERM 869 949292 - 949314 + r 80 -2.7 -5.60993 | CACATTAAAACGAAT GCGTGGA TTGGTAATT TTCACGC TTTTTTTCTAAAAGG hypB 950009 - 949281 - | hydrogenase expression/formation protein HypB TERM 870 950141 - 950151 + r 70 -2.4 -5.28983 | ACCCTAACCCCTTAT CGTC TCT GTCG TTTTTATCTTTTAAC HPP12_0897 950252 - 950124 - | hypothetical protein HPP12_0898 950562 - 950263 - | hypothetical protein TERM 871 950674 - 950688 + r 70 -7.2 -3.8709 | overlap 950667 TTTATTCTGTTTTTT CCAAAA CCT TTTTGG TTTGTAAAGCGATTT ackA-3 951016 - 950660 - | acetate kinase ackA-2 951587 - 950979 - | acetate kinase ackA-1 951861 - 951565 - | acetate kinase pta-2 952418 - 951879 - | phosphotransacetylase TERM 872 952190 - 952204 + g 71 -5 -4.65494 | AATGCTGCGCAATCG TTAACG CTT CGTTGA TTTTGTCTATCATTT pta-1 953424 - 952453 - | phosphotransacetylase TERM 873 954091 - 954059 - g 85 -2.8 -5.71638 | gap 1, overlap 954069 CAAGAATGAAAAAAA GCCTAATG-GAGTTA CTTC TAACGCTCATCAAGC AAACTTAACCAATAA TERM 874 954727 - 954715 - g 74 -9.1 -3.46359 | overlap 954705 954713 954724 AAGAAGCTAATAACA GCGCT CAA AGCGC GCAAAACGCCCAAGC HPP12_0904 953673 - 955193 + | hypothetical protein flgD 955244 - 956263 + | flagellar hook assembly protein TERM 875 956774 - 956764 - g 75 -5.4 -4.74453 | GAAGACATTGAAAAA TTGC ATG GCAA CACCCTTTCGCCCTT flgE-2 956260 - 958077 + | flagellar hook protein HPP12_0907 958129 - 958707 + | type II R-M system restriction endonuclease TERM 876 959017 - 959003 - g 75 -10 -2.9953 | TCAAGCACAAGGATA TTGCGC CAA GCGCAA AAGAAAAACTCCATT HPP12_0908 958717 - 959868 + | adenine specific DNA methyltransferase TERM 877 960244 - 960231 - g 72 -4.5 -4.8048 | TGTGGACACTAAAAA CGCCA TAGA TGACG ATAAAAAGCCCTACA rep 959872 - 961899 + | Rep helicase TERM 878 961955 - 961989 + F 72 -5 -4.7373 | opp_overlap 961958 GATTATAGCGATAGT TAAGCCCCTAAGAGCT AGG AACTCTTAAGAGCTTG TTTTTAATAAAGTGG TERM 879 961986 - 961958 - f 83 -11.1 -3.14026 | opp_overlap 961955 TATAGCGATAGTTAA GCCCCTAAGAGCT AGG AACTCTTAAGAGC TTGTTTTTAATAAAG TERM 880 962259 - 962226 - f 70 -8.3 -3.23611 | opp_overlap 962228, overlap 962218 962228 AAAAAACGCTAGTAA GATTTTAACTCTAGC TTGC GCTAGAGCCAAAATT TTAGTATAATGGCGT TERM 881 962257 - 962228 - f 86 -10.9 -3.16689 | opp_overlap 962228, overlap 962226 962218 AAAACGCTAGTAAGA TTTTAACTCTAGC TTGC GCTAGAGCCAAAA TTTTAGTATAATGGC TERM 882 962228 - 962257 + F 74 -6.5 -4.371 | opp_overlap 962228 962226 962218 AAAACGCTAGTAAGA TTTTAACTCTAGC TTGC GCTAGAGCCAAAA TTTTAGTATAATGGC TERM 883 962581 - 962591 + F 70 -4 -4.84311 | AAGGGGATTTTTAAG GTTA GTT TAAC TTTTCTTATGTGAAA alpA 962720 - 964276 + | outer membrane protein HopC/AlpA alpB 964298 - 965887 + | outer membrane protein HopB/AlpB hofG 968106 - 966562 - | outer membrane protein HofG TERM 884 967414 - 967426 + g 71 -4.8 -4.62069 | ATCGTTGCTGTTACT GGGA TTGCC TCCC TTTTTCAAATAAGGC TERM 885 967662 - 967652 - G 76 -4.6 -5.0538 | overlap 967653 TCGTATCGTAAAAAA GCGG TAT CCAC CACATAAGGCCTTGC frpB-3 968794 - 968351 - | iron-regulated outer membrane protein TERM 886 968505 - 968518 + g 83 -5.3 -5.28176 | AACACCGCATTCAGG CTCAA CCCT TTGAG TTTTTTATAAGTAGG frpB-2 970792 - 968819 - | iron-regulated outer membrane protein TERM 887 970242 - 970230 - G 79 -4.8 -5.01732 | opp_overlap 970230 970237 AAGTTGGTCAAAAAA GTGG CAGCC CCAC TTATGGCGTAGTCTT HPP12_0915 971483 - 971052 - | hypothetical protein carB 974745 - 971488 - | carbamoyl-phosphate synthase large subunit TERM 888 972727 - 972709 - G 77 -6 -4.57341 | opp_overlap 972707 972709 972711, overlap 972711 AAGCTCTTTTAAAAA GAGGGAAA ATT TTTCCCTG TCTTCTGCAATATCA TERM 889 972725 - 972711 - G 77 -8.6 -3.90048 | opp_overlap 972709 972707 972711, overlap 972709 GCTCTTTTAAAAAGA GGGAAA ATT TTTCCC TGTCTTCTGCAATAT HPP12_0917 975537 - 974845 - | integral membrane protein TERM 890 975343 - 975328 - G 82 -3.9 -5.40004 | CATCAAACCAAAAAA CGCCG CAATTT CAGCG ATAAAAAACACCCAT HPP12_0918 975681 - 976679 + | glyceraldehyde-3-phosphate dehydrogenase TERM 891 979155 - 979165 + G 73 -6.8 -4.21812 | GATCTATAATTTGCA GGCT AAT AGCC TTATTTTCAATAACA TERM 892 979999 - 979986 - g 76 -6.7 -4.44277 | CATGAAAATCCAAAA CGCTA TCTA TAGCG ATAATAATAACATTC TERM 893 983462 - 983474 + G 70 -7.7 -3.762 | TTTTTAAACCCCAAG TAGGC TTA GCCTA TTATTACATTGGTTT HPP12_0919 976759 - 983877 + | vacuolating cytotoxin VacA-like protein hopK 983929 - 985038 + | outer membrane protein HopK HPP12_0921 985306 - 985100 - | 4-oxalocrotonate tautomerase TERM 894 985431 - 985412 - H 83 -2.2 -5.92399 | opp_overlap 985420, overlap 985415 985420 CAATAAAATAAAAAA CAATAAAA GCCC TTTTAGTG GCTTTCAAGTCAAGT TERM 895 985438 - 985415 - H 77 -5.4 -4.94109 | gap 1, opp_overlap 985420, overlap 985412 985420 TAAAATAAAAAACAA TAAAAGCC-CT TTT AGTGGCTTTCA AGTCAAGTTAAGTTT TERM 896 985433 - 985420 - H 74 -3.1 -5.22104 | gap 1, opp_overlap 985420, overlap 985412 985415 TAAAAAACAATAAAA GCC-CT TTT AGTGGC TTTCAAGTCAAGTTA recR 985468 - 986049 + | recombinational DNA repair protein truD 986046 - 987191 + | tRNA pseudouridine synthase D TERM 897 987200 - 987250 + G 72 -3.3 -5.1417 | gap 1, opp_overlap 987212, overlap 987247 ATTTTGAAAAGATTA TCGCACAA-AACAGGCTCAAAACG AACG CGGTTTTAGCCACTTATTGCGCGA TTTTTGCTTTTATCG htpX 987178 - 988110 + | heat shock protein HtpX TERM 898 988322 - 988340 + G 76 -4.5 -5.02476 | overlap 988324 AATTTTACTCCACTT GCGAGCA CCATT TGCTCCC TTTTTTGGGGAATAT folE 988111 - 988653 + | GTP cyclohydrolase I TERM 899 989399 - 989387 - g 73 -5.5 -4.51224 | opp_overlap 989387 AAGATGAAGAAGAAA GCGGT AAA ACCAC TCATTTAGACAGCGC ispA 988669 - 989580 + | trans-isoprenyl diphosphate synthase TERM 900 990184 - 990171 - g 72 -4.5 -4.72201 | TTGTATAAAAAAGAA GTGCA TAAG CGCAC AGACCCCAAAAATGA surE 989577 - 990380 + | stationary-phase survival protein SurE HPP12_0928 990377 - 991036 + | hypothetical protein TERM 901 991596 - 991584 - g 77 -6.3 -4.63486 | overlap 991568 991587 ATTTTTTCAATAAAA TCATC AGC GATGA AAAACAATGCTTTTT HPP12_0929 991040 - 991642 + | hypothetical protein TERM 902 992076 - 992090 + G 78 -4.2 -5.27335 | opp_overlap 992086 ATTGCATTTCACCCT GAGCGT CAA ACTCTC TTTTTCTTTAGAGAA TERM 903 992164 - 992154 - g 71 -6.8 -3.97051 | AAATATCTTAAATAA CGCT AAA AGCG CGCATTTTAAATTTG HPP12_0930 991645 - 992400 + | radical SAM domain-containing protein TERM 904 992706 - 992696 - g 73 -5.4 -4.56597 | GGGTTGGGCCAAAAA CTCT ATG AGAG CGTGGAGCGATACGC HPP12_0931 992411 - 992896 + | hypothetical protein HPP12_0932 992995 - 993336 + | hypothetical protein proP 994533 - 993361 - | proline and betaine transporter HPP12_0934 995391 - 995005 - | hypothetical protein HPP12_0935 996337 - 995339 - | hypothetical protein TERM 905 995706 - 995718 + gr 71 -6.3 -4.24562 | TCTAATAGTTTTGCA GCATT ATA AATGC TTTCTGTAATTTTTT TERM 906 995764 - 995774 + gr 75 -2.6 -5.26875 | TCTCTTTGATATTTT TTTT ATT AAAA TTTTTTAATTCAAAA HPP12_0936 997473 - 996760 - | amino acid ABC transporter TERM 907 996920 - 996897 - G 77 -6 -4.62069 | GCGCGATTCTAAAAA CCTCTGCGAT AGTT ACCACAGAAG TTAAAGAAGTTTCTT TERM 908 997382 - 997362 - G 79 -6.9 -4.53439 | opp_overlap 997372, overlap 997372 CTAAAGGCAAAGAAA TGCAAAAAG CGG CTTTTAGCA TGGGGTAAAAAGCCT HPP12_0937 998161 - 997457 - | amino acid ABC transporter alr 999429 - 998296 - | alanine racemase HPP12_0939 1000788 - 999436 - | D-alanine glycine permease dadA 1002061 - 1000829 - | D-amino acid dehydrogenase subunit TERM 909 1001926 - 1001948 + g 73 -5.5 -4.63184 | ACGCAGAAATAAGCC CGGCATTCC CAAAA GAAGTGCCG TTTTTACCATCGCTT HPP12_0941 1002461 - 1002084 - | translation initiation inhibitor TERM 910 1002817 - 1002801 - H 81 -10.9 -2.62983 | CTCAGTGGTAGAGCA CGACCTT GCC AAGGTCG GGGCCGCGGGTTCGA TERM 911 1002999 - 1003013 + H 70 -3.6 -4.84914 | opp_overlap 1002994, overlap 1002994 GCAAATTAAACCAAA TTAAAC ATG GTTTGA TTTTGTTATCTCAAT HPP12_0942 1003389 - 1004879 + | integral membrane protein TERM 912 1004892 - 1004875 - f 75 -4.9 -4.87318 | GTGAAAATCTAAAAA CTTGAAT ATTG ACTCAAG TAAAGCTTAAAAATC TERM 913 1005009 - 1004992 - f 89 -7.1 -5.32565 | CAATCAATTAAAAAA GGTTATT CAAA AATAACC ATACAATTATAAAAA HPP12_0943 1005195 - 1005557 + | hypothetical protein TERM 914 1005939 - 1005955 + T 76 -3.7 -5.36965 | opp_overlap 1005939 ACCCCCTACAAAAAC GCTTCTA ATT TATAAGC TTTTTTATGCTCTTG HPP12_0944 1006942 - 1005929 - | hypothetical protein HPP12_0945 1007404 - 1006952 - | hypothetical protein TERM 915 1007039 - 1007017 - G 89 -10 -4.30995 | opp_overlap 1007016, overlap 1007014 GCTCGCATAAAACAA TTTTAGCCAC TTC ATGGCTAAAA GTCATCTCGCTCAAA TERM 916 1007229 - 1007241 + g 72 -3.4 -5.01732 | opp_overlap 1007229 AAATACGGCTCAAAG GCTA GAGAA TAGC TTTTTTGAGCGAGTT accD 1008287 - 1007418 - | acetyl-coa carboxylase beta subunit TERM 917 1007962 - 1007974 + g 78 -2.6 -5.38348 | CTGATCACGGAGCTT GGGC GGTTA GTCC TTTTTTCGTATTTTT TERM 918 1008900 - 1008876 - g 90 -9.4 -4.35524 | opp_overlap 1008876 GTTTGAAAGCTAAAA GCCTGGATTT AGAAA AAATCCAAGC TTTTTTCCGCACTCA TERM 919 1008876 - 1008900 + G 86 -7.2 -5.02074 | opp_overlap 1008876 GTTTGAAAGCTAAAA GCCTGGATTT AGAAA AAATCCAAGC TTTTTTCCGCACTCA HPP12_0947 1008368 - 1008982 + | acyl-coa thioester hydrolase HPP12_0948 1008993 - 1009649 + | integral membrane protein HPP12_0949 1010218 - 1009652 - | hypothetical protein TERM 920 1010302 - 1010312 + r 70 -4 -4.93177 | AACCAAGTAATTGCA TCAA CTT TTGA TTTTCTTGATTTTTG HPP12_0950 1010915 - 1010283 - | oxygen-insensitive NADPH nitroreductase lgt 1011766 - 1010912 - | prolipoprotein diacylglyceryl transferase TERM 921 1011670 - 1011657 - G 74 -4.5 -4.98522 | AACGCCATATAAAAA GCGAC AACA ATCGC GCACGCATACGCCAA HPP12_0952 1012504 - 1011776 - | ribosomal large subunit pseudouridine synthase C HPP12_0953 1013704 - 1012523 - | 3-deoxy-D-manno-octulosonic-acid transferase HPP12_0954 1014484 - 1013705 - | hypothetical protein TERM 922 1013818 - 1013802 - G 73 -7.9 -3.80877 | overlap 1013800 1013803 TCAGCGTATAAAATA CGCCCGC AAT ACGGGCA AGTGATCATATCCCC HPP12_0955 1015225 - 1014494 - | hypothetical protein TERM 923 1015243 - 1015257 + r 75 -8.6 -3.42685 | opp_overlap 1015243, overlap 1015241 TAAGCCTTTGTTAAA GCGTTT TTT AAACGC TCTTCTCTCTCTTCT TERM 924 1015257 - 1015243 - R 77 -8.6 -3.53761 | opp_overlap 1015243 1015241 TAAGCCTTTGTTAAA GCGTTT TTT AAACGC TCTTCTCTCTCTTCT glyQ 1016123 - 1015227 - | glycyl-tRNA synthetase alpha subunit TERM 925 1015404 - 1015387 - G 75 -2.7 -5.19916 | gap 1 AAAATATTGAAAAAA TGCGA-GC ATA GCATCACA AAATCATAAGCCGGT gpsA 1017075 - 1016137 - | glycerol-3-phosphate dehydrogenase HPP12_0958 1018976 - 1017216 - | hypothetical protein TERM 926 1018142 - 1018156 + g 70 -5.8 -4.42464 | CAATGCCATTATCTT TTAAAG TTT CTTTAA TTTGTTTAGCGACTT TERM 927 1018685 - 1018699 + g 79 -5.6 -5.00616 | CGCTAAACCCTCCCC CCACCG CAA CGATGG TTTTTTGGAACAAAC HPP12_0959 1019368 - 1018976 - | ATP/GTP-binding protein TERM 928 1019047 - 1019063 + gr 71 -3.7 -4.97824 | overlap 1019036 1019035 1019049 TGTTTTGCACTTGAT TGTGCAA GTT TTGCATG TTTTCTTTAAGTTTT HPP12_0960 1021305 - 1019341 - | ATP/GTP-binding protein TERM 929 1020076 - 1020093 + gr 77 -8.5 -3.54158 | overlap 1020085 CTCTTCTGTTTTTTT GCTTCTT TCCC AAGAAGC TTGGTTGTTGAAATC TERM 930 1020085 - 1020097 + gr 71 -7.7 -3.66732 | overlap 1020076 TTTTTTGCTTCTTTC CCAAG AAG CTTGG TTGTTGAAATCCTTA TERM 931 1020869 - 1020885 + gr 91 -8.1 -5.1971 | overlap 1020865 TCTTTAGCTCTGTTT GAAAAAC TCT GTTTTTC TTTTTGCTTTTTGAT TERM 932 1021127 - 1021083 - GR 71 -5 -4.61231 | gap 1, opp_overlap 1021098, overlap 1021088 CTACACCCTCAAAAA TCAAAGCGTTTAAGAGCGAGC TTTT GCCCGCTTTCACACGC-CCGA TGATACCGACTTTAA TERM 933 1021123 - 1021088 - GR 100 -10.4 -4.32046 | opp_overlap 1021098, overlap 1021083 CCCTCAAAAATCAAA GCGTTTAAGAGCGAGC TTTT GCCCGCTTTCACACGC CCGATGATACCGACT HPP12_0961 1022623 - 1021307 - | hypothetical protein HPP12_0962 1022954 - 1022703 - | hypothetical protein vapD 1023452 - 1023165 - | virulence associated protein D HPP12_0964 1023803 - 1023522 - | hypothetical protein TERM 934 1023616 - 1023604 - G 80 -7.7 -4.32857 | opp_overlap 1023615 TGGGCCAAAGATAAA GCGAT CTC ATCGC TTAAAAAAAGCTTGA HPP12_0965 1026878 - 1023819 - | cobalt-zinc-cadmium resistance protein HPP12_0966 1027957 - 1026878 - | cobalt-zinc-cadmium resistance protein TERM 935 1027015 - 1027031 + g 70 -9.5 -2.57132 | opp_overlap 1027014, overlap 1027014 CTTGAACCACCACAG GCCTAAA ACC TTTAGGC GTTCTCACAAACACC TERM 936 1027835 - 1027856 + g 100 -4.5 -5.88565 | gap 1, opp_overlap 1027834 ATCTAATTTAATCAC CTT-TAACCC CAT GGGTTGCAAG TTTTTTTCTTCTAAA HPP12_0967 1029249 - 1027954 - | nickel cobalt outer membrane efflux protein TERM 937 1028112 - 1028097 - G 72 -4.6 -4.7078 | opp_overlap 1028097 TCAAGTATTCAAAAA GCCCGA TTTT TTGGGC TTCATAAGCGATGCG TERM 938 1028853 - 1028841 - G 77 -6.2 -4.51765 | CATAAGTCAAATAAA GGCG TTTAG CGCC AATAAAAGCGAGATT glyS 1031344 - 1029239 - | glycyl-tRNA synthetase beta subunit TERM 939 1029877 - 1029864 - G 79 -6.7 -4.54727 | overlap 1029859 CGCCTTAAAGCAAAA GGATC TTTA GATCC GCTAGGGATTTTACC HPP12_0969 1031457 - 1032530 + | hypothetical protein TERM 940 1033038 - 1033024 - g 74 -5 -4.68908 | CTTATTTAAAACAAA TGCAAA ATA TCTGCA ATGAAAACATTCAAA pgm 1032543 - 1034018 + | 2,3-bisphosphoglycerate-independent phosphoglycerate mutase gatC 1034033 - 1034314 + | glutamyl-tRNA amidotransferase subunit C TERM 941 1034337 - 1034353 + T 74 -5.9 -4.62069 | opp_overlap 1034349 1034350 TAAATAGGTTTCATA TCAGGTT AAA AACTTGA TTTTTGAAATCAAAC TERM 942 1034367 - 1034349 - T 71 -5.4 -4.63928 | opp_overlap 1034337, overlap 1034350 ATATCAGGTTAAAAA CTTGATTT TTG AAATCAAA CAGACAGAAAAAAGC TERM 943 1034387 - 1034404 + T 95 -8.5 -5.28315 | CAGAAAAAAGCTATC GCTTGAT TAAA ATCAAGC TTTTTTACATTTTAT bioA 1035744 - 1034434 - | adenosylmethionine-8-amino-7-oxononanoate aminotransferase TERM 944 1034730 - 1034746 + g 73 -2.3 -5.26119 | ACCCGCTTAAAGCCT TGTTCTT CTC AATAACA TTTTCTTTTTCAAAA HPP12_0973 1035874 - 1037337 + | peptidyl-prolyl cis-trans isomerase D ftsA 1037353 - 1038831 + | cell division protein FtsA ftsZ 1038962 - 1040119 + | cell division protein FtsZ HPP12_0976 1040341 - 1040198 - | hypothetical protein HPP12_0977 1041137 - 1040472 - | hypothetical protein TERM 945 1040528 - 1040544 + g 71 -3.7 -4.88684 | opp_overlap 1040528 1040527 1040530 TGTCTTTAATCAAAG CATAAAC TAG GTCTATG TTTTCTGTTTGTCTT TERM 946 1041036 - 1041024 - G 70 -3.4 -4.95957 | GAAAGCAATCAAAAA GTCA GGGTT TGAC TGGCCATTAGGTAAG HPP12_0978 1041845 - 1041309 - | hypothetical protein HPP12_0979 1042832 - 1042008 - | mechanosensitive ion channel domain-containing protein TERM 947 1042076 - 1042086 + g 72 -4.6 -4.77157 | TTTCAATGTGGTTAG CGTC TAG GGCG TTTTTGATGCGTTCA TERM 948 1042865 - 1042852 - R 76 -6.7 -4.56597 | opp_overlap 1042864 TTTTCCTTTTAAAAA TCGCT TAAA AGCGA TCAAACAATTTAATC TERM 949 1043063 - 1043049 - R 71 -6.4 -4.26622 | overlap 1043040 AAATCACACCCAAAA GGTTGC CCC ACAACC GCATGGATATTTTCT HPP12_0980 1044480 - 1043356 - | hypothetical protein HPP12_0981 1044765 - 1044484 - | hypothetical protein TERM 950 1044896 - 1044913 + r 77 -8.5 -3.56972 | overlap 1044892 TAGCCAAATTCTCTA GCCATAT CTGT ATATGGC TTGCTTTGCTACGAT HPP12_0982 1046974 - 1045061 - | hypothetical protein TERM 951 1045364 - 1045378 + g 70 -2.8 -5.10077 | opp_overlap 1045364 ATTCAGACGACCAAA GAAATC CAG GATCTC TTTTTTAAAATCTTT TERM 952 1046181 - 1046196 + g 93 -5.4 -5.59655 | overlap 1046159 1046183 TCTTTAGAGATGATT TTGCCT TGAT AGGCGA TTTTTTCTTCATTTA HPP12_0983 1047751 - 1047017 - | hypothetical protein TERM 953 1047596 - 1047612 + g 74 -5.1 -4.76312 | overlap 1047597 1047611 AGCGTCAAATTCCCT AGCCTTT TCT AAAGGCA TTTTTAAATGTTCTC TERM 954 1047597 - 1047611 + g 72 -8.6 -3.44703 | overlap 1047596 GCGTCAAATTCCCTA GCCTTT TCT AAAGGC ATTTTTAAATGTTCT HPP12_0984 1049291 - 1047885 - | hypothetical protein HPP12_0985 1049623 - 1049357 - | hypothetical protein HPP12_0986 1049991 - 1049671 - | hypothetical protein HPP12_0987 1050701 - 1050030 - | hypothetical protein TERM 955 1050102 - 1050072 - G 70 -2.6 -5.055 | overlap 1050082 TGAACCTTGAAAAAA CAAACACAAACCAG GCG CTAGCTCTTGTTTA ATGGGTCTTAATTTT HPP12_0988 1050881 - 1050711 - | hypothetical protein HPP12_0989 1051564 - 1050977 - | serine/threonine kinase C-like protein HPP12_0990 1052053 - 1051604 - | serine/threonine kinase C-like protein HPP12_0991 1052728 - 1052213 - | serine/threonine phosphatase 2C-like protein HPP12_0992 1052973 - 1052725 - | hypothetical protein terY 1053784 - 1053140 - | phage/colicin/tellurite resistance cluster protein TerY HPP12_0994 1053949 - 1053794 - | hypothetical protein TERM 956 1054438 - 1054389 - H 87 -11 -3.47349 | opp_overlap 1054389 1054390, overlap 1054390 1054395 TCTCTAAAGGCACAA GGAAAAGGGAGCTAAAGATAAA AACGCA TTTACCCTTAACTCCCCTTTCT CTTTATAGGGAGCTG TERM 957 1054437 - 1054390 - H 95 -14.5 -2.68088 | opp_overlap 1054390 1054389, overlap 1054389 1054395 CTCTAAAGGCACAAG GAAAAGGGAGCTAAAGATAAA AACGCA TTTACCCTTAACTCCCCTTTC TCTTTATAGGGAGCT TERM 958 1054432 - 1054395 - H 100 -10.8 -4.50661 | opp_overlap 1054390 1054389, overlap 1054390 1054389 AAGGCACAAGGAAAA GGGAGCTAAAGATAAA AACGCA TTTACCCTTAACTCCC CTTTCTCTTTATAGG HPP12_0995 1058077 - 1058427 + | hypothetical protein TERM 959 1059548 - 1059560 + G 74 -6.3 -4.45723 | TACCCTGATTTTGAC GCTTT GAA AAAGC TTTTGGTGTCTTATT HPP12_0996 1058480 - 1060213 + | hypothetical protein TERM 960 1060925 - 1060935 + G 73 -5.4 -4.58395 | AACCTAAACATGACC GCAT TAA ATGC TTTTTCAAAGATAAA HPP12_0997 1060255 - 1061508 + | hypothetical protein HPP12_0998 1061552 - 1061683 + | hypothetical protein TERM 961 1062037 - 1062081 + G 93 -7.3 -5.4505 | opp_overlap 1062041 1062043 TAAACCCATTTTGAT TAAAGACTTCTTTAAAGGCAA TGA TTACCTTTATAGGAGGCTTTG TTTTTTATTGGGGAA TERM 962 1063320 - 1063306 - g 70 -2.8 -5.06103 | overlap 1063295 AGAAGCGCTAAAAAA TGCG CAATTGT CGCA AATTGAAGAAATATT HPP12_0999 1061807 - 1063411 + | hypothetical protein HPP12_1000 1063516 - 1064145 + | hypothetical protein HPP12_1001 1064130 - 1064426 + | hypothetical protein speA 1066363 - 1064516 - | arginine decarboxylase capJ 1067546 - 1066377 - | type 1 capsular polysaccharide biosynthesis protein J HPP12_1004 1067979 - 1067551 - | hypothetical protein HPP12_1005 1068785 - 1068000 - | S-adenosylmethionine-dependent methyltransferase TERM 963 1068050 - 1068079 + g 80 -7.9 -4.37092 | overlap 1068055 CCCTTAAAGGAGCGT CATACCCCTCTAA AGTT TTAGAGGGATCTG TTTTATCCAAAAAAT TERM 964 1068055 - 1068074 + g 76 -10.8 -2.68387 | overlap 1068050 AAAGGAGCGTCATAC CCCTCTAA AGTT TTAGAGGG ATCTGTTTTATCCAA TERM 965 1068358 - 1068370 + g 70 -2.6 -5.02502 | opp_overlap 1068348 TACAAGGCTTTTAAA GCCT CTAGC GGGC TTTTTCTGTGGTATA HPP12_1006 1069808 - 1068789 - | hypothetical protein TERM 966 1069378 - 1069366 - G 84 -7.7 -4.77173 | opp_overlap 1069365 1069366 TGCTTATAAAACAAA TGGAG CCA CTCCA ATTTATCAAAAAAGG metG 1071761 - 1069809 - | methionyl-tRNA synthetase TERM 967 1070419 - 1070388 - G 74 -3.8 -5.04601 | gap 1 CGCATAAAGCAAAAA GCTTGATTGC-AACA GCG CGTTTGCGATCAAAC TCAACAAGGCTTCTA TERM 968 1072655 - 1072673 + G 70 -3.1 -4.86731 | CATGTTTGAGCATGT GGGTAAG GATAA TTTGCCC TTTTATTTCAAAAAA cfa 1071930 - 1073099 + | cyclopropane fatty acid synthase HPP12_1009 1074973 - 1073102 - | mechanosensitive ion channel family protein TERM 969 1074527 - 1074505 - G 86 -9.2 -4.35524 | opp_overlap 1074503 GCCCTAAACGCAAAA GGAAAGAATC GCT GATGCTTTCC ACATCTTTTTGTTCG TERM 970 1075067 - 1075081 + r 72 -2.8 -5.38958 | CATAAAGTTACCCAT GCAATT TGA AAGTGC TTTTTATTTATCCCT TERM 971 1076109 - 1076087 - R 76 -6.3 -4.59853 | GTAATTTTTCAAAAA TGCCGCT AAAATCAAA AGCGGCA CTCAAAAATTGTATT HPP12_1010 1076960 - 1076208 - | flagellar sheath adhesin TERM 972 1076383 - 1076368 - G 74 -6.2 -4.42653 | ATCCTATGCACAAAA GTTTTG GGGA CAAAAC CTCCAGAATTGGTGC guaA 1078571 - 1077045 - | gmp synthase TERM 973 1077538 - 1077553 + g 74 -6.1 -4.34771 | CATTCAGGCAGTCCG CCCAC ATTATG GTGGG TTTTGATCACTTTTG TERM 974 1078056 - 1078031 - G 82 -7.7 -4.55128 | AGCCGCAAACTAAAA GGGCAAAATTT TCTA AAATCTTACCC CCTTCTTCGCTTTGA HPP12_1012 1079070 - 1078582 - | hypothetical protein TERM 975 1078739 - 1078759 + g 71 -4 -4.88918 | TGAGAATCAATCAGC GAAAACGC ATAGA GCGTTTTA TTTTCTTTAGACTGG HPP12_1013 1081627 - 1079237 - | biotin sulfoxide reductase TERM 976 1081231 - 1081241 + g 71 -4 -4.88405 | AACCACCATAACTGG CATT ATA AATG TTTTCTTTAGGGATT HPP12_1014 1082321 - 1081731 - | hypothetical protein HPP12_1015 1083669 - 1082347 - | nifs-like protein TERM 977 1083263 - 1083295 + g 76 -3.5 -5.30199 | opp_overlap 1083269 CCTACAATCACACGC TTTAAAGCCATATCT TTC AAATACGGCTCTAAA TTTTTCTTCGTTTTT HPP12_1016 1084002 - 1083688 - | ADP hydrolase of the hit protein family TERM 978 1085027 - 1085043 + G 71 -9.5 -2.76315 | overlap 1085007 1085026 1085029 AATCAATGATTTGCG CAGTTTC TTT GAAACTG ATTTGAGGGTGTTGG pheS 1084083 - 1085069 + | phenylalanyl-tRNA synthetase alpha subunit TERM 979 1085255 - 1085239 - g 80 -6.5 -4.83169 | opp_overlap 1085239 AGCCCCCCATAAAAA CGCCGAA AAA CTCAGCG TGTGTCAAGTGGATG TERM 980 1087193 - 1087171 - g 70 -7.8 -3.68674 | AAAAGCTCTAAAAGA CGCTCAAATC CCT AATTTAAGCG AGATTCTACCCCTTG pheT 1085069 - 1087363 + | phenylalanyl-tRNA synthetase beta subunit aroA 1087379 - 1088668 + | 3-phosphoshikimate 1-carboxyvinyltransferase TERM 981 1088817 - 1088798 - g 87 -5.1 -5.40072 | TCGTTTGGAAAAAAA CTTCAAT GTGAAA ATTGAAG AAGATCCTAAAAAAA TERM 982 1089133 - 1089111 - g 76 -7 -4.41895 | AAGCTCCAACGAAAA GTGGCTTTAG TTT CTCAAACCAC CAAACAAACCCCAAA lytB 1088658 - 1089482 + | 4-hydroxy-3-methyl-but-2-enyl diphosphate reductase rpsA 1089603 - 1091273 + | 30S ribosomal protein S1 HPP12_1022 1091302 - 1091832 + | hypothetical protein serA 1091848 - 1093422 + | D-3-phosphoglycerate dehydrogenase TERM 983 1093551 - 1093561 + G 82 -8.2 -4.63218 | GAAAAAACCTAATGG GGGC AAA GCCC TTTTATTCACGCAAC HPP12_1024 1093432 - 1095282 + | 3-octaprenyl-4-hydroxybenzoate carboxylyase TERM 984 1095930 - 1095954 + G 89 -5.7 -5.4505 | overlap 1095925 TAGCGATTGCTTGCG GGGCGAATCTT TTA AGGATTGGCTC TTTTTTGTTCAAAGA HPP12_1025 1095305 - 1095973 + | hypothetical protein HPP12_1026 1095975 - 1096733 + | hypothetical protein cheV-3 1096737 - 1097672 + | chemotaxis protein TERM 985 1098942 - 1098930 - g 77 -7.7 -4.24183 | overlap 1098941 TAGAAGAAAGAAGAA GGCTT AAC AAGCC TGAAACCGGTAAAGT cheA 1097729 - 1100146 + | autophosphorylating histidine kinase TERM 986 1100198 - 1100182 - g 85 -3.7 -5.61881 | overlap 1100186 1100189 TTTGAAAAACAAAAA GAAGCTA GTG TAGGTTC TAAACAAGAAGACAA cheW 1100143 - 1100640 + | purine-binding chemotaxis protein/Chea-MCP coupling protein TERM 987 1100712 - 1100695 - T 85 -8.5 -4.26903 | TTTATTCCATTAAAA GCTTGAT TTTA ATCAAGC GGTAATGTTTGATTG HPP12_1030 1101394 - 1100894 - | thiol peroxidase TERM 988 1102028 - 1102015 - g 74 -3.9 -5.14477 | TAGACACTCAAAAAA TTGAA ATCA TTCAA ACGAGCAACGCTCAA HPP12_1031 1101618 - 1102259 + | iron-dependent superoxide dismutase TERM 989 1102272 - 1102305 + F 73 -3.9 -5.08824 | opp_overlap 1102277 1102287, overlap 1102275 1102277 TAAGCGTTATTTTGC ATAGAGTGGTTTAAA GGTT TTTAAACCACGCTTC TTTTTTGAATGAAAG TERM 990 1102275 - 1102302 + F 100 -10 -4.64763 | opp_overlap 1102277 1102287, overlap 1102272 1102277 GCGTTATTTTGCATA GAGTGGTTTAAA GGTT TTTAAACCACGC TTCTTTTTTGAATGA TERM 991 1102277 - 1102300 + F 83 -11.2 -2.61579 | opp_overlap 1102277 1102287, overlap 1102275 1102272 GTTATTTTGCATAGA GTGGTTTAAA GGTT TTTAAACCAC GCTTCTTTTTTGAAT TERM 992 1102300 - 1102277 - f 83 -11.2 -2.87931 | opp_overlap 1102277 1102275 1102272, overlap 1102287 GTTATTTTGCATAGA GTGGTTTAAA GGTT TTTAAACCAC GCTTCTTTTTTGAAT TERM 993 1102519 - 1102532 + G 70 -3.1 -4.87893 | TTTATGATTTGGGCT GTTCT ACCG GGAAC TTTTTCATTGCACTT TERM 994 1102639 - 1102626 - g 70 -2.5 -5.11112 | AAAGCGCAAGAAAAA TTAAA AGAT TTTAA CAATGTCCGTTTTGA HPP12_1032 1102314 - 1103045 + | methyltransferase priA 1104966 - 1103107 - | primosomal protein replication factor TERM 995 1103323 - 1103337 + g 87 -6.4 -5.30199 | TTGAGAGGCTTTTAG GCTCAA TTG TTGGGC TTTTTCTTCGTTTTT HPP12_1034 1105187 - 1104951 - | hypothetical protein HPP12_1035 1105427 - 1105200 - | hypothetical protein TERM 996 1105738 - 1105711 - g 78 -4.2 -5.34555 | TTAGAGGACAAAAAA GCGGATCTTAAA AGCG TTCAAAATACGC CCAAAAATTTACCCC HPP12_1036 1105630 - 1106376 + | hypothetical protein HPP12_1037 1106914 - 1106384 - | hypothetical protein HPP12_1038 1106880 - 1107014 + | hypothetical protein HPP12_1039 1107093 - 1108223 + | zinc-metalloprotease TERM 997 1108891 - 1108905 + G 75 -2.8 -5.1925 | overlap 1108892 CGTTTTTTTAGCCGC TGGATT AAA AATCCC TTTTTTGGCTTGTGA hemK 1108220 - 1109050 + | S-adenosylmethionine-dependent methyltransferase TERM 998 1109456 - 1109499 + G 73 -6.7 -4.30576 | opp_overlap 1109456 CAAGTGTTGAAAAAT TCGCTCACCACTTTGGC TATGGGGGGC GCTAAGGGGGGGAGCGA TTTTGATCCTAAAGG TERM 999 1110104 - 1110120 + G 77 -8.1 -4.13995 | opp_overlap 1110102 1110098 GAAAATGAATTGAGC GTTTTAG ACG CTAAAAC TTTGCTTTCTAACGG gdhA 1109117 - 1110463 + | NADP-specific glutamate dehydrogenase HPP12_1042 1111781 - 1110477 - | alpha-1,3-fucosyltransferase TERM 1000 1110810 - 1110776 - G 73 -7.4 -4.07568 | opp_overlap 1110764, overlap 1110777 TGTCGTTTTCTAAAA TCGTTTTAAAAAAATC TAG GATTTTTTTAAAACTC AAATCTTGGTAAAAG TERM 1001 1110809 - 1110777 - G 78 -10.9 -3.04398 | opp_overlap 1110764, overlap 1110776 GTCGTTTTCTAAAAT CGTTTTAAAAAAATC TAG GATTTTTTTAAAACT CAAATCTTGGTAAAA TERM 1002 1111688 - 1111699 + g 73 -5.8 -4.56597 | opp_overlap 1111687 CGCCTCCCCACCAAT TCGC CACA GCGA TTTTTAGGGGGGGGG HPP12_1043 1114601 - 1111791 - | cytochrome C-type biogenesis protein TERM 1003 1111834 - 1111816 - G 71 -7.4 -3.85909 | overlap 1111811 TTAGGCAAACTCAAA TGGCGTTT GAA ATACGCCA AGATCACGAGAGCGA TERM 1004 1112306 - 1112295 - G 75 -5.8 -4.69622 | ACACAAGCCCAAAAA GCCA TAAC TGGC GGTGATGATAGAGAC TERM 1005 1113068 - 1113090 + g 79 -3.5 -5.42514 | GCGCGTTAGGGGATT TTTGATTGA CTTCT TCAACCAAA TTTTTTAATTTATAC TERM 1006 1113359 - 1113371 + g 77 -7.7 -4.24326 | overlap 1113362 AATCCTGGACTTGAA GCCTT TGA AAGGC TTTTAAATGGTCTTT HPP12_1044 1115281 - 1114610 - | thiol:disulfide interchange protein TERM 1007 1115142 - 1115174 + g 74 -6.4 -4.36931 | CGCTCATCGTTTAAT TCTTTGGAGCTTTG AGAGC CAGAGCTTAAAAGA TTTTCATCTAACTTG hemH 1116362 - 1115358 - | ferrochelatase HPP12_1046 1116418 - 1116849 + | hypothetical protein TERM 1008 1117114 - 1117079 - g 78 -2.7 -5.52384 | overlap 1117080 TGGCCAGCAAAAAAA CGCATTTGATTTTAA GCGTGA TTGAAATCAAAAGCA TTGAAAAAATCCTGC HPP12_1047 1116850 - 1117530 + | hypothetical protein homC 1119662 - 1117554 - | outer membrane protein HomC dcd 1120389 - 1119823 - | deoxycytidine triphosphate deaminase HPP12_1050 1120520 - 1120990 + | biotin carboxyl carrier protein TERM 1009 1122100 - 1122079 - g 74 -3.7 -5.09173 | GAAGATCCTAAAAAA TTCTACCCA AGCC CGGGCAAAA TCACCGAATGGATCG HPP12_1051 1120996 - 1122375 + | biotin carboxylase TERM 1010 1122448 - 1122460 + F 77 -4.9 -5.14563 | CGTTAAATTTTATGA CTTTA TAG TAAAG TTTTTTCATGCAAAC HPP12_1052 1122468 - 1123430 + | type II R-M system methyltransferase TERM 1011 1123587 - 1123575 - g 71 -4.8 -4.59511 | AAGAGTTTTTAAAAA GCGT GCTTA ACGC TATAGATGAAGTGAT HPP12_1053 1123430 - 1123978 + | type II R-M system restriction endonuclease HPP12_1054 1124071 - 1124670 + | hypothetical protein HPP12_1055 1124667 - 1125794 + | aminotransferase nrdB 1126116 - 1127141 + | ribonucleoside-diphosphate reductase 1 beta subunit pcm 1127151 - 1127780 + | L-isoaspartyl-protein carboxyl methyltransferase HPP12_1058 1127791 - 1128828 + | integral membrane protein TERM 1012 1129143 - 1129114 - g 90 -3.5 -5.88565 | opp_overlap 1129132 GCTAGAAGAAAAAAA CTTCCATGCGCGT TTTG ACGCTCAAAAAAG AGCGTATCGTTACCT truA 1128830 - 1129558 + | pseudouridylate synthase I galE 1130586 - 1129552 - | UDP-glucose 4-epimerase TERM 1013 1130445 - 1130425 - G 71 -6.1 -4.15222 | overlap 1130430 ATCCGCTTGAATAAA CACAACCCT ATT AGGGTAGTA ATGCTCTAACGCTTT TERM 1014 1130440 - 1130430 - G 71 -6.8 -3.96841 | overlap 1130425 CTTGAATAAACACAA CCCT ATT AGGG TAGTAATGCTCTAAC TERM 1015 1132632 - 1132616 - g 73 -6.7 -4.24002 | overlap 1132608 GCGGAAATTTTAAAA TTCATTT TTA AAATGAA ACTTCAAGGTAACAT HPP12_1061 1131284 - 1132819 + | outer membrane protein HPP12_1062 1132837 - 1133589 + | short chain alcohol dehydrogenase hcpC 1134678 - 1133806 - | cysteine-rich protein C TERM 1016 1134656 - 1134645 - G 73 -5.8 -4.55491 | opp_overlap 1134644 1134645 CACCCAAGCACAAAA CCCT AAAA AGGG ATTTTTTGACATTTT eda 1135373 - 1134753 - | 2-keto-3-deoxy-6-phosphogluconate aldolase TERM 1017 1135277 - 1135301 + g 74 -4.9 -4.74285 | TACCCCCCTCTATCA GGCTTTGTGCT AAA GGCACAGCGTC TTTTATATTCTCAAT edd 1137218 - 1135392 - | 6-phosphogluconate dehydratase TERM 1018 1136365 - 1136377 + g 74 -4.1 -5.1675 | ATTAAGCCTATAAGA GCGTT AAG AATGC TTTTTTCATCAATGA HPP12_1066 1137284 - 1138561 + | glucose-6-phosphate 1-dehydrogenase HPP12_1067 1138572 - 1139255 + | glucose-6-phosphate 1-dehydrogenase glk 1139242 - 1140252 + | glucokinase HPP12_1069 1140422 - 1141468 + | mannitol dehydrogenase HPP12_1070 1142674 - 1141478 - | lipopolysaccharide biosynthesis protein HPP12_1071 1142848 - 1144155 + | hypothetical protein horH 1144824 - 1144162 - | outer membrane protein HorH TERM 1019 1144553 - 1144543 - G 76 -6.8 -4.35042 | CTGATCATAAAACAA TCCG TAA CGGA AACCCACATGCTCTA porG 1145115 - 1145675 + | pyruvate ferredoxin oxidoreductase gamma subunit porD 1145691 - 1146083 + | pyruvate ferredoxin oxidoreductase delta subunit porA 1146093 - 1147316 + | pyruvate ferredoxin oxidoreductase alpha subunit porB 1147329 - 1148273 + | pyruvate ferredoxin oxidoreductase beta subunit purB 1148381 - 1149703 + | adenylosuccinate lyase horI 1149774 - 1150607 + | outer membrane protein HorI uvrB 1152580 - 1150604 - | excinuclease ABC subunit B TERM 1020 1151334 - 1151323 - G 73 -7.2 -4.09864 | overlap 1151313 ATTTAGGGTCTAAAA GCCC TGTA GGGC GAATGATTTGCTCAG TERM 1021 1152279 - 1152267 - G 80 -7.7 -4.3255 | opp_overlap 1152265 1152262 TTTTCAATGAATAAA TCCCT TCT AGGGA TATAGCTTTCAGGCT HPP12_1080 1153301 - 1152621 - | hypothetical protein TERM 1022 1152661 - 1152650 - G 78 -3 -5.47399 | TCAATCTCAAAAAAA TCAA TGTT TTGA TAATGATCGCTTTTT HPP12_1081 1156076 - 1153314 - | hypothetical protein hcpX 1157253 - 1156483 - | cysteine-rich protein X ggt 1159194 - 1157491 - | gamma-glutamyltranspeptidase flgK 1161191 - 1159371 - | flagellar hook-associated protein 1 HPP12_1085 1161627 - 1161193 - | hypothetical protein TERM 1023 1161447 - 1161462 + g 79 -3.2 -5.38054 | overlap 1161461 TTAAAGACAATATTT GCGCAT CTAT ATTCGC TTTTTCTTTCTCAAA HPP12_1086 1162458 - 1161706 - | type II R-M system restriction endonuclease TERM 1024 1161871 - 1161851 - G 77 -7.7 -4.30576 | opp_overlap 1161851 1161850 1161854 CTTCCACCATCAAAA TAATGTTGC ATG ACAACATTA ATATTTTTTAAAGCC HPP12_1087 1163398 - 1162451 - | type II R-M system methyltransferase flgM 1163764 - 1163561 - | FlgM protein HPP12_1089 1164034 - 1163828 - | hypothetical protein slyD 1164623 - 1164066 - | fkbp-type peptidyl-prolyl cis-trans isomerase TERM 1025 1164528 - 1164510 - G 73 -6.8 -4.30987 | overlap 1164511 AGCGCCTATAATAAA CTCTAAAG GCT CTTTAGAA ATATTGCCATCTAGC HPP12_1091 1165605 - 1164610 - | hypothetical protein TERM 1026 1165315 - 1165344 + g 77 -8.7 -3.9461 | gap 1, overlap 1165314 TGTGTTAGCCTGCAC TTCTTGCGAAGCTT TTA AGGC-TCGCAAGGA TTCTTCTTGGGAAAG HPP12_1092 1166152 - 1165613 - | peptidoglycan-associated lipoprotein precursor tolB 1167472 - 1166219 - | translocation protein TolB HPP12_1094 1168305 - 1167469 - | hypothetical protein TERM 1027 1168094 - 1168110 + g 72 -3.6 -5.04265 | overlap 1168092 TCTTCTGCTTTTTCA GCTGCT TTTTC AGCTGC TTTTTCATCTTTTTT exbD-1 1168725 - 1168324 - | biopolymer transport accessory protein ExbD TERM 1028 1168423 - 1168440 + g 73 -7.1 -4.12941 | TCGCTTGTCCGCGCG GATACTA ACCC TAGTATC TTTATCGTATTTCTT exbB-1 1169347 - 1168778 - | biopolymer transport accessory protein ExbB HPP12_1097 1169729 - 1169358 - | ATP synthase F1 subunit epsilon HPP12_1098 1171149 - 1169740 - | ATP synthase F1 subunit beta HPP12_1099 1172078 - 1171173 - | ATP synthase F1 subunit gamma TERM 1029 1171270 - 1171253 - G 78 -7.1 -4.35483 | opp_overlap 1171252 1171249 CTTTATTATAAGAAA TGGTTAA TGTT TTAACCA AATCTTTAGCGTTAT TERM 1030 1172009 - 1172020 + g 73 -2.2 -5.19916 | TGGAAACGAGTTTCA TCGC ATGC GTGA TTTTTTGCGTGTTTT HPP12_1100 1173604 - 1172093 - | ATP synthase F1 subunit alpha HPP12_1101 1174169 - 1173627 - | ATP synthase F1 subunit delta HPP12_1102 1174685 - 1174170 - | ATP synthase F0 subunit B HPP12_1103 1175123 - 1174689 - | ATP synthase F0 subunit b' TERM 1031 1175233 - 1175205 - R 79 -3.9 -5.46657 | overlap 1175206 TATCTTAACAAAAAA TCGCTTAAAAATT GAG AATATCTAAGCGT TAAGACATCATTTTT TERM 1032 1175232 - 1175206 - R 73 -7.4 -3.86909 | overlap 1175205 ATCTTAACAAAAAAT CGCTTAAAAATT GAG AATATCTAAGCG TTAAGACATCATTTT spo0J 1176105 - 1175233 - | chromosome partitioning protein TERM 1033 1175385 - 1175401 + g 71 -5.1 -4.53077 | overlap 1175386 CAGCGATGAGCGTTT GGGTTTC CTT GAAACCA TGTTTTTTATTTTCA TERM 1034 1175386 - 1175400 + g 70 -8.6 -3.29406 | overlap 1175385 AGCGATGAGCGTTTG GGTTTC CTT GAAACC ATGTTTTTTATTTTC soj 1176903 - 1176109 - | chromosome partitioning protein TERM 1035 1176280 - 1176268 - G 70 -2.7 -5.055 | TGAATCTCTAAAAAA TTCTG AGT CAAAA TACTTGAACAATTCC HPP12_1106 1177544 - 1176906 - | bifunctional biotin operon repressor / biotin acetyl coenzyme A carboxylase synthetase fmt 1178458 - 1177541 - | methionyl-tRNA formyltransferase HPP12_1108 1181081 - 1178460 - | ATPase TERM 1036 1178670 - 1178686 + g 85 -3 -5.73978 | ATTAGCGTTATGGGT GGCAAA AATAA TTTGTC TTTTTTGTTTCTGCT TERM 1037 1179028 - 1179045 + g 83 -4.9 -5.29385 | TCTATAAATTCTGCG TGTTGCA TACC TGTAACA TTTTTTAATTCAATT TERM 1038 1180214 - 1180204 - G 73 -2.4 -5.18726 | opp_overlap 1180198 1180204, overlap 1180198 CCTGCATAACAAAAA GGAG TAT CGCC TTTTTCATTGGTGAT HPP12_1109 1182427 - 1181126 - | hypothetical protein TERM 1039 1182894 - 1182908 + G 76 -7.1 -4.18488 | TATTAAAACCCTACA GCGCA TTTAT TGCGC TTTCTTACGCTCAAT HPP12_1110 1182635 - 1183066 + | hypothetical protein TERM 1040 1183372 - 1183397 + T 93 -9.2 -4.52589 | AGGTAATACTCTTTG GCTTTTAACA AGCGAA TGTTAAAAGC TTTTCTCTAGAAAGG TERM 1041 1183441 - 1183424 - T 74 -9.1 -3.07291 | opp_overlap 1183424, overlap 1183414 1183411 AAGGAGGTGATCCAA CCGCAGG TTCA CCTACGG TTACCTTGTTACGAC TERM 1042 1184947 - 1184970 + T 95 -12.6 -3.63627 | TTTGTTTTTTGATAG GCTGTTGTTA TTCC TAACAACAGC TTTAGCGTATCACAA HPP12_1111 1186536 - 1185649 - | hypothetical protein TERM 1043 1186724 - 1186705 - g 79 -3.6 -5.49568 | opp_overlap 1186699, overlap 1186699 1186693 1186707 1186723 AACTTAAAAGAAAAA CTTTTCTT ATAA AAGAAAGG GTTGAAAAAGTGGAT TERM 1044 1186747 - 1186723 - g 88 -8.7 -4.77173 | opp_overlap 1186745, overlap 1186705 TTCTTATAAAAGAAA GGGTTGAAA AAGTGGA TTTCAACCC TCAAAGAGAGTTTTT TERM 1045 1186745 - 1186757 + G 72 -3.3 -5.1356 | opp_overlap 1186723 AAAAGTGGATTTCAA CCCTC AAA GAGAG TTTTTCTTAATCAAC HPP12_1112 1186680 - 1186829 + | hypothetical protein rplS 1187182 - 1186826 - | 50S ribosomal protein L19 TERM 1046 1187159 - 1187174 + g 70 -3.2 -4.91573 | TTGAGCGTCTTCAAA CTGCTG AATG TAGCGG TTTTTCATGTGTTTT trmD 1187893 - 1187204 - | tRNA(guanine-n1)-methyltransferase rimM 1188448 - 1187894 - | 16S rRNA processing protein RimM TERM 1047 1187985 - 1187973 - G 86 -7.7 -4.96848 | overlap 1187953 TCTTGGATATAAAAA TCCCT GTA AGGGA TTAAAAAAATCTTAG TERM 1048 1188351 - 1188309 - G 71 -4.8 -4.63179 | opp_overlap 1188314 1188315, overlap 1188315 AAAGAAGAAGCAAAA GAGAAAGCGTTCAAGGGAGC AAC GCTCACCTTAACGCCTTTTT TTAAACACTCCGGAA TERM 1049 1188314 - 1188346 + g 91 -6.4 -5.41143 | opp_overlap 1188309 1188315, overlap 1188315 AGAAGCAAAAGAGAA AGCGTTCAAGG-GAGC AAC GCTCACCTT-AACGCC TTTTTTTAAACACTC TERM 1050 1188315 - 1188345 + g 83 -9.9 -3.83963 | opp_overlap 1188309 1188315, overlap 1188314 GAAGCAAAAGAGAAA GCGTTCAAGG-GAGC AAC GCTCACCTT-AACGC CTTTTTTTAAACACT TERM 1051 1188345 - 1188315 - G 91 -10.4 -4.50859 | opp_overlap 1188315 1188314, overlap 1188309 GAAGCAAAAGAGAAA GCGTTCAAGGGAGC AAC GCTCACCTTAACGC CTTTTTTTAAACACT HPP12_1116 1188796 - 1188449 - | hypothetical protein TERM 1052 1188672 - 1188658 - G 73 -7.1 -4.09685 | CTTTATCTTCTAAAA GCGTG TACTC CACGC TCAAAGCTTGCGGAA rpsP 1189043 - 1188813 - | 30S ribosomal protein S16 ffh 1190463 - 1189117 - | signal recognition particle protein TERM 1053 1190346 - 1190360 + g 81 -2.8 -5.54192 | CTTTATGATGCACAT CGTTTT TTA AGAGCG TTTTTTTCAATTCGT valS 1193096 - 1190478 - | valyl-tRNA synthetase TERM 1054 1192969 - 1192980 + g 85 -3 -5.83226 | opp_overlap 1192969 GGGGGCATCATCAAG CAAA ATCG TTTG TTTTTTTCTTGGATT fliW-1 1193233 - 1193640 + | flagellar assembly protein FliW TERM 1055 1193804 - 1193815 + G 86 -4.4 -5.40072 | overlap 1193812 AAATAGCCCCTTATT TAGC GAAC GCTA TTTTTTTAACACGCA TERM 1056 1193812 - 1193849 + G 72 -3.5 -5.0133 | gap 1, overlap 1193804 CCTTATTTAGCGAAC GCTATTTTTTTAACACGC AAG GCGTGGTCAATAAA-AGC TTTTTTAAAAAAATA TERM 1057 1193873 - 1193863 - g 78 -2.6 -5.40072 | opp_overlap 1193863 GCTTTTTTAAAAAAA TAAA TTC TTTA TTCTTGCAAGTTAAA murG 1193652 - 1194713 + | N-acetylglucosaminyl transferase TERM 1058 1195169 - 1195156 - g 74 -5.2 -4.71426 | CGGCTATCAACAAAA CGCC CAAAAT GGCG ATACAGGCAACAACC hopI 1194821 - 1196911 + | outer membrane protein HopI TERM 1059 1197157 - 1197169 + G 76 -9.1 -3.63805 | opp_overlap 1197157 CTTTAAGCTCTCAAA GCGTC ATT GACGC TTTAGGCTATGGCGT TERM 1060 1197169 - 1197157 - g 74 -9.1 -3.57561 | opp_overlap 1197157 CTTTAAGCTCTCAAA GCGTC ATT GACGC TTTAGGCTATGGCGT TERM 1061 1200238 - 1200262 + G 80 -4.3 -5.25803 | overlap 1200231 GCGTGAAAGCGAATA TCTTTGCTTAT GGG GTAGGCACAGA TTTTTTATGGAACTT hopL 1196934 - 1200635 + | outer membrane protein HopL TERM 1062 1200835 - 1200849 + G 75 -2.8 -5.18355 | opp_overlap 1200835 GACGCTATTGATATA CACCAA AAA TTCGTG TTTTTACTTTTTAAG proC 1200649 - 1201422 + | pyrroline-5-carboxylate reductase fic 1201450 - 1201983 + | cell filamentation protein Fic HPP12_1126 1202496 - 1202074 - | metalloprotease TERM 1063 1202524 - 1202540 + r 86 -10.9 -3.33261 | opp_overlap 1202524 AAGAAGTTTAAAAAA GCCCTAA AAT TTAGGGC TTATAAAGATTAAGC TERM 1064 1202540 - 1202524 - R 100 -10.9 -5.11937 | opp_overlap 1202524 AAGAAGTTTAAAAAA GCCCTAA AAT TTAGGGC TTATAAAGATTAAGC fldA 1203044 - 1202550 - | flavodoxin HPP12_1128 1203717 - 1203136 - | integral membrane protein HPP12_1129 1203841 - 1204032 + | cation transport subunit for cbb3-type oxidase TERM 1065 1204822 - 1204837 + G 72 -3.3 -5.02476 | overlap 1204833 1204835 GTATGCGATCGGCGG CTCTA CCCCTT TAGAG TTTTTTAAACGCTGT trxB-2 1204058 - 1205026 + | thioredoxin reductase family protein TERM 1066 1205142 - 1205159 + T 93 -9.9 -4.09378 | opp_overlap 1205140, overlap 1205140 TTTTAATAAGCTATC GCTTGAC TAGC GTCAAGC TCTTTTATATTTTTA HPP12_1131 1206384 - 1205224 - | major facilitator superfamily permease TERM 1067 1205278 - 1205263 - G 88 -4 -5.71295 | gap 1, overlap 1205266 ATACAAAAAGAAAAA GAGCGCT ATA AGCG-TC AAGGCAAAATGCATG TERM 1068 1205480 - 1205467 - G 76 -3.1 -5.28481 | gap 1 CATGTAAGCAAAAAA CGC-CA CCA TGAGCG CATACACCCCTATGA TERM 1069 1206518 - 1206507 - g 76 -7.2 -4.21086 | opp_overlap 1206506, overlap 1206508 GAAGAAATCAAAGAA GCGC ACAT GCGC GATTGGTTTTCTAAA TERM 1070 1206874 - 1206892 + G 75 -10.4 -3.03124 | opp_overlap 1206871 CCAATCAAGTGATCA CCGATATT GTC AATATCGG TATTGGGGGGTCAGA TERM 1071 1207307 - 1207325 + G 77 -9.6 -3.46647 | overlap 1207305 GAAGAAAAATTTTAA CGCTCTTT TGA AAGGAGCG TATTTGATGGATGAG TERM 1072 1207809 - 1207820 + G 79 -5.8 -5.00616 | GCCAAAGATTTAGCC CACC ACAG GGTG TTTTTTGGCAACCGC pgi 1206447 - 1208084 + | glucose-6-phosphate isomerase TERM 1073 1208184 - 1208167 - f 71 -8.5 -3.11476 | opp_overlap 1208167, overlap 1208165 1208164 ATCCATTCAAAATCA TCCGTTA ATCA TAACGGA TTTTAGCGCTATATA TERM 1074 1208167 - 1208184 + F 85 -8.5 -4.13728 | opp_overlap 1208167 1208165 1208164 ATCCATTCAAAATCA TCCGTTA ATCA TAACGGA TTTTAGCGCTATATA TERM 1075 1208821 - 1208837 + G 75 -9.5 -3.35349 | TATGTCTTTAGCGAT GCGTATT TAG AATACGC TTATAAGAATTATTT hofH 1208392 - 1209807 + | outer membrane protein HofH TERM 1076 1210170 - 1210184 + T 84 -5.6 -5.45652 | opp_overlap 1210168 ATGGATTTTAAAGGG GGGGCT AAA AACCCC TTTTTTATTCAACGT HPP12_1134 1212258 - 1210204 - | carbon starvation protein A TERM 1077 1210940 - 1210928 - G 85 -9.1 -4.15854 | AAACCGATCGCAAAA GTGGG TGC CCCAC CAGTGCGGCTCAAAA TERM 1078 1212428 - 1212445 + H 74 -6.3 -4.43351 | opp_overlap 1212428, overlap 1212417 GAGCCGTTTTAAACA TGATGCT TTAA AGCGTCA TTATTTTTAAGGTAT HPP12_1135 1212467 - 1213120 + | glutamine ABC transporter permease protein TERM 1079 1213704 - 1213716 + G 75 -2.7 -5.22258 | CTTTGTGGTTTATGG CGTTA TCT TAATG TTTTATTTTAGTTTA glnP 1213123 - 1213794 + | glutamine ABC transporter permease protein TERM 1080 1213915 - 1213929 + G 70 -2.8 -5.10077 | opp_overlap 1213927 TTTAGGGCCTAGCGG GTGC GGGAAAA GCAC TTTTTTAAAATGTTT TERM 1081 1214439 - 1214409 - g 70 -2.6 -5.01732 | overlap 1214410 AATTCGCGCAAAAAA TCGCTAGCAAAA TCGTGTT TTTTGATAGCGG TAAAATCGCTGAAGA glnQ 1213796 - 1214542 + | glutamine ABC transporter ATP-binding protein TERM 1082 1215396 - 1215440 + G 73 -6.8 -4.15044 | gap 1, opp_overlap 1215401, overlap 1215400 1215401 TTTATGGCGATGAAA TCAAA-CCGGAAGAAATTATT TTTG AATGATTTCTTTAGGCTTTGA TTTCTTGACAGAACG HPP12_1138 1214591 - 1215424 + | glutamine ABC transporter periplasmic glutamine-binding protein TERM 1083 1215464 - 1215478 + F 80 -7.2 -4.62069 | overlap 1215467 CAGAACGCGTTTTTG TTGCTA AAT TAGCAA TTTTGTGATCTTTTT HPP12_1139 1215546 - 1216097 + | hypothetical protein HPP12_1140 1217625 - 1216402 - | glucose/galactose transporter TERM 1084 1216956 - 1216973 + g 72 -3.4 -5.13521 | overlap 1216962 CCCCAAAAACAAAGT GCTTGT GCGAAA ACAGGC TTTTTTGCGTCGTTT HPP12_1141 1219061 - 1217754 - | integral membrane protein TERM 1085 1217882 - 1217862 - G 90 -8.9 -5.16133 | ACTATAAGACAAAAA GCCAAAGGC TAA GCCATCGGC AATGGAGAAGGTTAA TERM 1086 1218755 - 1218740 - G 76 -4.6 -5.10601 | overlap 1218741 ACAAAATCACAAAAA TCGCTC CCGA GAGCGC TACGATGCCTAAAGC TERM 1087 1218754 - 1218741 - G 70 -8.1 -3.6392 | overlap 1218740 CAAAATCACAAAAAT CGCTC CCGA GAGCG CTACGATGCCTAAAG TERM 1088 1219239 - 1219227 - R 76 -6.3 -4.61482 | overlap 1219211 TCCGCTAAAAAATAA TCGTT TTT AACGA AAATCGCAAAAAAGC TERM 1089 1219357 - 1219343 - R 74 -5.6 -4.64861 | opp_overlap 1219343 1219344, overlap 1219344 1219345 TTGTTGCAAAACAAA CGCCCC ATA AGAGCG ATTATGGGGGTAAAT hopQ 1221469 - 1219541 - | outer membrane protein HopQ TERM 1090 1220863 - 1220875 + g 77 -7.7 -4.19276 | opp_overlap 1220862, overlap 1220871 TGCTATTTAAAGGAG CAAGC CCG GCTTG TTTTAAAGCTTTTGA TERM 1091 1221693 - 1221666 - R 83 -7.1 -4.64861 | overlap 1221668 1221669 TTGTTGTAAAATAAA CACCCCCATAA GTGCAA TTATGGGGATA AATCCATAAAAGGAG TERM 1092 1221691 - 1221668 - R 76 -7.5 -3.93868 | overlap 1221666 1221669 GTTGTAAAATAAACA CCCCCATAA GTGCAA TTATGGGGA TAAATCCATAAAAGG TERM 1093 1221859 - 1221884 + r 100 -12.7 -4.59424 | opp_overlap 1221857, overlap 1221877 AGTTTTTCCAAAGTT CCCTTAAGGCT TTTT AGCTTTAAGGG TTTTCCTTTAAATTT TERM 1094 1221877 - 1221896 + r 74 -5.8 -4.56093 | opp_overlap 1221857, overlap 1221859 TTAAGGCTTTTTAGC TTTAAGGG TTTT CCTTTAAA TTTTATCCTTAACTT deoD 1222632 - 1221931 - | purine-nucleoside phosphorylase deoB 1223870 - 1222629 - | phosphopentomutase nupC 1225138 - 1223882 - | pyrimidine nucleoside transport protein TERM 1095 1225360 - 1225350 - H 76 -2.6 -5.40625 | AGATTATACAAAAAA TTTT CTT AAAA ATCCATTAAAATTAC TERM 1096 1226081 - 1226099 + G 71 -3.8 -4.93296 | opp_overlap 1226067 1226084, overlap 1226067 1226068 1226084 AGCTCTTTTTTTGAA AAAGCGTT CAT GACGCTTA TTTTTGTGCTGATCC TERM 1097 1226084 - 1226096 + G 73 -5.5 -4.56153 | opp_overlap 1226067 1226084, overlap 1226067 1226068 1226081 TCTTTTTTTGAAAAA GCGTT CAT GACGC TTATTTTTGTGCTGA TERM 1098 1226096 - 1226084 - g 71 -4.8 -4.56597 | opp_overlap 1226067 1226068 1226084 1226081, overlap 1226067 TCTTTTTTTGAAAAA GCGT TCATG ACGC TTATTTTTGTGCTGA HPP12_1146 1225451 - 1226782 + | multidrug-efflux transporter TERM 1099 1226847 - 1226825 - g 85 -7 -5.07107 | GAAATTTCTAAAAAA GTCTTACACA TTG TGGGCAAGAC CAACGCCGCTTACAA TERM 1100 1227477 - 1227465 - g 77 -6.3 -4.65263 | ATTTCTTAAAAGAAA TGCAA AAC TTGCA CCCTCGTTTCTTTGA HPP12_1147 1226801 - 1227562 + | PP-loop family protein HPP12_1148 1228710 - 1227559 - | na+/h+ antiporter HPP12_1149 1230115 - 1228736 - | integral membrane protein TERM 1101 1228773 - 1228786 + gH 76 -2.3 -5.40004 | opp_overlap 1228773, overlap 1228755 TTTTTCTCTTTATAA GCGGT AAAA ACCCC TTTTTTGATTTCATA TERM 1102 1229812 - 1229798 - GH 74 -5.6 -4.65933 | overlap 1229800 CATGCTCAAAACAAA GGCGCT TAG AGCGAC AAAATAAAACACGCT TERM 1103 1230185 - 1230171 - gR 70 -2.8 -5.09762 | ATTTTAACATAAAAA GAGAGA CAA TCTATC CGTTAGCGCGGTTAT HPP12_1150 1230089 - 1230223 + | hypothetical protein HPP12_1151 1231457 - 1230282 - | sugar efflux transporter protein TERM 1104 1230457 - 1230446 - G 81 -5.8 -5.00884 | AGCTCCCCGAAAAAA TCGC GCTC GCGA CATCCGTGGCATCCG TERM 1105 1230594 - 1230584 - G 85 -5.4 -5.19879 | TTTTAAACACAAAAA GCAA GAG TTGC GGGCAAATGACTAAA TERM 1106 1231225 - 1231205 - G 81 -5.4 -5.02231 | opp_overlap 1231205 TAAAAAGAGCAAAAA GGAAAAGC AATAA GCGTTTCC TTTCAATCTTAGCGC TERM 1107 1231399 - 1231389 - G 84 -6.8 -4.86385 | AGTGTTAAAAATAAA CGCT GAA AGCG AAAACACAAAGACCC TERM 1108 1231837 - 1231818 - g 78 -4.2 -5.3167 | gap 1 TAAAAACAAAGAAAA TGGCCC-GC ACC GCTGGGACA AATTGCACAAAGATT TERM 1109 1232066 - 1232076 + G 81 -6.8 -4.75372 | ATGTGCATTTCCACG CTCC TAT GGAG TTTTTAATCAATAAT HPP12_1152 1231729 - 1232472 + | alpha-carbonic anhydrase TERM 1110 1232514 - 1232492 - T 100 -13.6 -4.67038 | CCGCTAAAATGAAAA CTCTCTCTTT TAA AAAGAGAGAG ATAAAAACCATTCTT HPP12_1153 1233948 - 1232713 - | hypothetical protein TERM 1111 1234015 - 1234036 + r 73 -8.1 -3.58533 | opp_overlap 1234019, overlap 1234016 TGTATATAGTCATAT TCAATCGTT ATTA AACGATTGG TTTGAAAAATTGTGA TERM 1112 1234016 - 1234035 + r 72 -9.4 -2.74799 | opp_overlap 1234019, overlap 1234015 GTATATAGTCATATT CAATCGTT ATTA AACGATTG GTTTGAAAAATTGTG TERM 1113 1234103 - 1234093 - R 74 -5.4 -4.65916 | opp_overlap 1234088 1234093 TCCATTCCAACAAAA CTTG ATA CAAG TTTTCCTTATACCTT TERM 1114 1234093 - 1234103 + r 71 -5.4 -4.50661 | opp_overlap 1234093, overlap 1234088 TCCATTCCAACAAAA CTTG ATA CAAG TTTTCCTTATACCTT HPP12_1154 1235298 - 1234228 - | hypothetical protein TERM 1115 1235432 - 1235422 - R 74 -5.4 -4.65916 | opp_overlap 1235422 TCCATTCCAATAAAA CTTG ATA CAAG TTTCCCTTATACCTT asd 1236751 - 1235711 - | aspartate-semialdehyde dehydrogenase TERM 1116 1235914 - 1235924 + g 76 -4.6 -5.055 | CATCGCAAACAACCA CGCT AGG GGCG TTTTTTAAAACTTCA TERM 1117 1236554 - 1236539 - G 76 -3.2 -5.1861 | opp_overlap 1236537 1236540, overlap 1236540 CCCAGCACTAAAAAA GGCGAT GTCT ATCGCT TCTTTTTCAAAAACT TERM 1118 1236540 - 1236553 + g 76 -6.7 -4.40561 | opp_overlap 1236539 1236540, overlap 1236537 CCAGCACTAAAAAAG GCGAT GTCT ATCGC TTCTTTTTCAAAAAC hisS 1238066 - 1236738 - | histidyl-tRNA synthetase TERM 1119 1236971 - 1236981 + g 70 -8.2 -3.64703 | opp_overlap 1236952 1236970 TTTGCCTTAAAGACT CCGC TAA GCGG TTTGCATAAGAAAAA HPP12_1157 1238128 - 1239177 + | ADP-heptose-lps-heptosyltransferase II TERM 1120 1239357 - 1239324 - T 95 -14.9 -3.31766 | opp_overlap 1239333, overlap 1239316 1239322 1239333 AATTATAGGATAATA TCCAAAAAAGCGTTT TTAA AAACGCTTTTTTAGA GTCAAAGCCATTAAA TERM 1121 1239348 - 1239333 - T 88 -7.6 -5.17054 | opp_overlap 1239333, overlap 1239324 1239322 ATAATATCCAAAAAA GCGTTT TTAA AAACGC TTTTTTAGAGTCAAA TERM 1122 1239333 - 1239348 + T 88 -7.6 -5.0538 | opp_overlap 1239333 1239324 1239322 ATAATATCCAAAAAA GCGTTT TTAA AAACGC TTTTTTAGAGTCAAA HPP12_1158 1239697 - 1239368 - | hypothetical protein HPP12_1159 1239975 - 1240904 + | aldo-keto reductase TERM 1123 1240925 - 1240954 + T 83 -6.5 -4.84359 | overlap 1240927 TTGGGTATTTATAAT TGCATTGGCTCTT TTAA AAGAGTCAGTGTG TTTTTATCCCCCTAA TERM 1124 1240927 - 1240952 + T 85 -9.1 -4.04397 | overlap 1240925 GGGTATTTATAATTG CATTGGCTCTT TTAA AAGAGTCAGTG TGTTTTTATCCCCCT TERM 1125 1241336 - 1241324 - T 79 -5.5 -5.07275 | TCAGAGAGATAAAAA GGGCT AAA AACCC TTCAAAAAGTCTTTT fusA 1243499 - 1241421 - | translation elongation factor Ef-G rpsG 1243978 - 1243511 - | 30S ribosomal protein S7 rpsL 1244401 - 1243994 - | 30S ribosomal protein S12 TERM 1126 1244392 - 1244403 + g 70 -3 -5.01845 | TAATCAACTGATTGA TAGT AGGC ACTA TTTTTCCTTATTCTA rpoB 1253163 - 1244539 - | DNA-directed RNA polymerase beta subunit TERM 1127 1244770 - 1244784 + g 79 -5 -5.1675 | overlap 1244771 GATCACACGAGCGTT TTCTTC TTT GAAGAG TTTTTTACTGACTAA TERM 1128 1248927 - 1248938 + g 76 -4.4 -5.02074 | opp_overlap 1248927 TAACTTCCCCATAAC TCCA AGAA TGGA TTTTTTCAGGGCTGG TERM 1129 1252306 - 1252318 + g 82 -6.3 -4.89521 | overlap 1252295 CATAGGGTATTCCAC CCATT CTA AATGG TTTTCTTTAAGCTCT TERM 1130 1253351 - 1253374 + r 74 -5.3 -4.75308 | opp_overlap 1253334 1253353, overlap 1253353 TGCCACGCTAGAGCA GAGAAAGGC GCAAAG GCCTTTCTG TTTTTAAGTCTTACT TERM 1131 1253353 - 1253372 + r 76 -7.9 -3.98606 | opp_overlap 1253353, overlap 1253351 CCACGCTAGAGCAGA GAAAGGC GCAAAG GCCTTTC TGTTTTTAAGTCTTA rplL 1253762 - 1253385 - | 50S ribosomal protein L7/l12 rplJ 1254301 - 1253807 - | 50S ribosomal protein L10 rplA 1255114 - 1254410 - | 50S ribosomal protein L1 TERM 1132 1254592 - 1254608 + g 77 -5.1 -4.83615 | TCGCCTTGCCAATAG GGGCA TGAACAT TGCCC TTTTTATCCACCCTG rplK 1255584 - 1255159 - | 50S ribosomal protein L11 nusG 1256132 - 1255602 - | transcription antitermination protein NusG secE 1256338 - 1256159 - | preprotein translocase subunit SecE HPP12_1170 1257985 - 1256786 - | translation elongation factor Ef-TU TERM 1133 1258146 - 1258162 + H 72 -9.5 -2.65815 | opp_overlap 1258136 1258158 TTGAACCGCCGACCT CTTCCTT ACC AAGGAAG TGCTCTGCCTCTGAG TERM 1134 1258763 - 1258787 + G 70 -9.5 -2.66395 | overlap 1258762 1258767 TATGCTCATCACTTT CAAGGAAAAAA TGG TTTTTTTCTTG CTTGTGCTGATGGCT TERM 1135 1260113 - 1260124 + G 75 -3 -5.24129 | GGTGTGTAAAATGGC TCAT ATTT ATGA TTTTTTATGCGAGCA HPP12_1171 1258683 - 1260419 + | ABC transporter ATP-binding protein HPP12_1172 1261098 - 1260430 - | hypothetical protein HPP12_1173 1262288 - 1261299 - | type II R-M system methyltransferase TERM 1136 1261408 - 1261422 + g 74 -4.4 -4.86133 | overlap 1261415 AAGGAGTAAGCGCCG TATTTT TTT AAAATA TTTTTAATCTCTATC TERM 1137 1262229 - 1262213 - G 71 -6.6 -3.98236 | AAATCGCACCAGAAA GGTTGT CCCCT ACAACC GCATGGATATTTTCT HPP12_1174 1262683 - 1262297 - | type II R-M system restriction endonuclease HPP12_1175 1262991 - 1262641 - | type II R-M system restriction endonuclease cysE 1263594 - 1263079 - | serine acetyltransferase TERM 1138 1263437 - 1263415 - G 79 -9 -3.92373 | TATCCCAGTGATAAA GCGCGCTAAC TGA GAAAGCGCGC GCGCAATGAAGTAAA TERM 1139 1263668 - 1263678 + r 76 -4 -5.24416 | opp_overlap 1263668 TCCATTCCAATAAAA TTTG ATG CAAA TTTTTCTTATCATTA TERM 1140 1263804 - 1263791 - R 71 -3.1 -5.03145 | overlap 1263780 1263779 CAATCCTTTAAAAAA GGCTT AAAA AAACC CACTAATCCATCATT TERM 1141 1264180 - 1264149 - R 79 -10.4 -2.95877 | gap 1, overlap 1264144 1264142 1264158 TAAACGAATATTATA GCTAAATCAC-GCTT TTT AAGCAATGATTTAGC CCAACAAAACCCTTA HPP12_1177 1264510 - 1264193 - | ATP synthase F0 subunit C TERM 1142 1264630 - 1264616 - H 72 -5 -4.652 | opp_overlap 1264616 1264617 1264618, overlap 1264617 1264618 AAACTAGCTTAAAAA CGCTTT TAA AAAACG CTTTTTAAAAAGTAA HPP12_1178 1264806 - 1265912 + | hypothetical protein TERM 1143 1265945 - 1265919 - T 100 -9.6 -5.3321 | opp_overlap 1265927, overlap 1265921 AAGGAATAAGAAAAA CACATAGATCTT AGC AAGATCTATGCA AGATTAGTAAGGGAT TERM 1144 1265943 - 1265921 - T 100 -12.2 -4.27297 | opp_overlap 1265927, overlap 1265919 GGAATAAGAAAAACA CATAGATCTT AGC AAGATCTATG CAAGATTAGTAAGGG pnp 1268031 - 1265965 - | polynucleotide phosphorylase TERM 1145 1267028 - 1267014 - G 75 -5.6 -4.67982 | overlap 1267018 CCCTAGTGAATAAAA TGGAGC TAT GCGCCA TAGGGAGCAAATCGC HPP12_1180 1268738 - 1268034 - | hypothetical protein HPP12_1181 1271014 - 1268753 - | organic solvent tolerance protein TERM 1146 1269962 - 1269950 - G 71 -6.3 -4.14633 | CAGGTTTAAAAAATA CTTGA TAT TCAAG CCATAATAATTGTTT HPP12_1182 1271496 - 1271017 - | hypothetical protein TERM 1147 1271533 - 1271508 - R 100 -9.2 -4.89063 | opp_overlap 1271513 1271524 GCATTCAAAAACAAA TAAGACAAAC TCTTTG GTTTGTCTTA AACTTTAACCTTTAA purD 1272819 - 1271545 - | glycinamide ribonucleotide synthetase HPP12_1184 1273583 - 1273203 - | hypothetical protein TERM 1148 1273321 - 1273332 + gr 72 -4.4 -4.70353 | opp_overlap 1273315 TTGCACAATTCCAAT GCTT TGTT AAGC TTTTGATTTCTTATC HPP12_1185 1273998 - 1273549 - | hypothetical protein HPP12_1186 1275127 - 1274441 - | ABC transporter ATP-binding protein HPP12_1187 1275825 - 1275121 - | undecaprenyl pyrophosphate synthase dld 1278706 - 1275866 - | D-lactate dehydrogenase TERM 1149 1276573 - 1276584 + g 85 -5.8 -5.18371 | AAATGACTTTTTCTT CGCT CTTA AGCG TTTTATTTTCTAAAG TERM 1150 1276749 - 1276737 - G 76 -3.3 -5.27335 | opp_overlap 1276737 1276741 CTTTTTAAAGAAAAA CGAGC CGC GCTTG TGGTTGTTTGCATGT HPP12_1189 1278778 - 1279125 + | hypothetical protein hemD 1279128 - 1279808 + | uroporphyrinogen III cosynthase crcB 1279855 - 1280247 + | CrcB integral membrane protein TERM 1151 1280252 - 1280263 + T 73 -3.6 -5.08088 | overlap 1280237 1280237 GCGTTAATTAAAAAA CGCT TTTT GGCG TTTTTATTGACGCTT hemN-2 1281336 - 1280299 - | oxygen-independent coproporphyrinogen III oxidase TERM 1152 1280484 - 1280505 + g 71 -6.6 -4.11773 | ATCGCTTGTCTTGTT CGCTAAGT GTTTCA ACTTGGCG TTTTAAGGGGTCTTT TERM 1153 1280830 - 1280842 + g 71 -4.9 -4.53636 | AGCGAGTTTTAGTTC TTCTT TTA AAGAA TTTTCATTGTCTAAT TERM 1154 1281566 - 1281552 - g 72 -4.3 -4.66535 | AAGTTTGAAAAGAAA GCTTT AGGCA AAAGC AAAATCGTCAACATG HPP12_1193 1281432 - 1281722 + | cytochrome C553 mutT 1281883 - 1282350 + | diadenosine polyphosphate hydrolase TERM 1155 1283420 - 1283430 + G 71 -6.8 -4.08767 | TCGCATTCTGGGGTA GCGA GTA TCGC TTTTAAAGCCCTAGC lysC 1282352 - 1283569 + | aspartokinase HPP12_1196 1283566 - 1284108 + | hypothetical protein TERM 1156 1284627 - 1284604 - g 71 -6.8 -4.05875 | GGGAAAAAATTGAAA GCCTGTTA GAGAGCGT TAACAGGC ATAAGATCCCCTTAA holB 1284105 - 1284761 + | DNA polymerase III delta prime subunit folP 1284758 - 1285900 + | dihydropteroate synthase HPP12_1199 1286449 - 1285988 - | hypothetical protein HPP12_1200 1286819 - 1287715 + | membrane transport protein HPP12_1201 1287719 - 1288966 + | integral membrane protein HPP12_1202 1289045 - 1289596 + | hypothetical protein carA 1289596 - 1290723 + | carbamoyl-phosphate synthetase small chain TERM 1157 1291110 - 1291092 - g 72 -9.6 -3.04322 | opp_overlap 1291090 CGCAAGGTTTGAATA CCGCTAAG TGG CTTAGCGA AGAGTTTTTATTAGA HPP12_1204 1290890 - 1291894 + | formamidase TERM 1158 1292315 - 1292362 + T 73 -4.4 -4.91109 | gap 1, overlap 1292319 GCTTATCAGTTAGGT GGAGTGTTTTTAACGCTTATCTT TTA GGGATAAGCCTTAAAA-CATTGC TTTTTATCATGAGCC HPP12_1205 1292916 - 1292380 - | hypothetical protein HPP12_1206 1293541 - 1292969 - | maf-like protein alaS 1296086 - 1293543 - | alanyl-tRNA synthetase TERM 1159 1293726 - 1293746 + g 70 -2.6 -5.00884 | overlap 1293724 1293728 TTTCACCCCGCATGC GAGAGTGA TTCGC TCATTTTC TTTTTTAAACACCAT TERM 1160 1293935 - 1293945 + g 70 -5.4 -4.44608 | GCTTGTTAATGCCGG CGAT CAC ATCG TTATTTTTCAATAAA TERM 1161 1294464 - 1294481 + g 89 -5.5 -5.4477 | overlap 1294453 1294465 CTCATCGCTCACTTG CGCGATC ACTT GATCGCC TTTTTTTAGCGCTTT TERM 1162 1294465 - 1294480 + g 79 -9 -3.85235 | overlap 1294453 1294464 TCATCGCTCACTTGC GCGATC ACTT GATCGC CTTTTTTTAGCGCTT TERM 1163 1294772 - 1294791 + g 74 -4.3 -4.96468 | opp_overlap 1294772 1294775, overlap 1294767 CATAAGCGTTTAAAA TAGCGCT AAAATC AGCGTTA TTTTGTTTGCCTTTC TERM 1164 1295730 - 1295748 + g 74 -4.6 -4.86621 | GCTGATGTATAAATC TTTAGGCT TAA ACCCTAAA TTTTTGGTTACAAAT TERM 1165 1296079 - 1296069 - G 75 -5.4 -4.77925 | opp_overlap 1296077 AAAAAATTGTAAAAA TTCG TTG CGAA TATCCATGGGTATTC HPP12_1208 1296206 - 1296436 + | hypothetical protein TERM 1166 1296635 - 1296658 + T 80 -6.9 -4.63486 | opp_overlap 1296635 1296640, overlap 1296627 1296632 1296640 GATCTCATTTTATAA TAAAACTCA TTTTAT TGAGTTTTA TTTTATTAAAGAGAT TERM 1167 1296640 - 1296653 + T 70 -2.4 -5.27476 | opp_overlap 1296640 1296635, overlap 1296632 1296635 CATTTTATAATAAAA CTCA TTTTAT TGAG TTTTATTTTATTAAA TERM 1168 1296839 - 1296823 - T 89 -3 -5.94713 | opp_overlap 1296837 1296837, overlap 1296837 1296838 ACCCCACAAAAAAAA GAGTTT AAAAG AAACCC CTTAACAAGGGAGTT TERM 1169 1296851 - 1296837 - T 80 -6.4 -4.67651 | opp_overlap 1296837 1296837, overlap 1296823 1296838 AGAGTTTAAAAGAAA CCCCTT AAC AAGGGA GTTTAAGAAAAGAGA TERM 1170 1297020 - 1296997 - T 71 -6.7 -4.19879 | overlap 1297001 ACAAAAGCCTTAAAA GAAACCCCC AAAAAA GGGAGTTCC ACAAAGGGATTTAAG babB 1299120 - 1297039 - | outer membrane protein HopT/BabB TERM 1171 1298016 - 1298048 + g 70 -2.7 -5.08011 | opp_overlap 1298016 1298014 1298017, overlap 1298017 GCACTTCATAACACA CCCCTAAAGAGTCTG ATA CAAAATTTTTAGGGA TTTTTTCAAAGTTTT TERM 1172 1299257 - 1299269 + r 77 -5.5 -5.00196 | TTGATAAGATTTTTG CGCTA ATT TGGCG TTTTGTTGTTTCAAA rpsR 1299961 - 1299704 - | 30S ribosomal protein S18 ssb 1300529 - 1299984 - | single-strand DNA-binding protein rpsF 1300967 - 1300539 - | 30S ribosomal protein S6 TERM 1173 1301115 - 1301105 - R 76 -4.6 -5.0925 | opp_overlap 1301105, overlap 1301099 GCTCAAAACGAAAAA CGCC TTA GGCA TTTTTTAGGGGTTAA HPP12_1213 1302142 - 1301120 - | DNA polymerase III holoenzyme delta subunit TERM 1174 1301375 - 1301359 - G 95 -3 -6.20267 | gap 1 CGAAAAATAAAAAAA GCTGGTA AAAA TACC-GC TCTAACCCCCTTAAA vacB 1304066 - 1302132 - | 3'-5' exoribonuclease R TERM 1175 1302715 - 1302699 - G 80 -2.2 -5.59502 | TAAAAAAGGAAAAAA GCCC ATGTTTTTA GGGC GAACAATCTCATAAT TERM 1176 1303173 - 1303187 + g 82 -8.6 -4.26076 | opp_overlap 1303172 ATACACTAAAGCCAG GCGTTT TTC AAACGC TTTTAATGAACATGC TERM 1177 1303694 - 1303710 + g 85 -3 -5.75342 | GCTCTTTAAAAGGGA TAGCCA CAATC TGGTTA TTTTTTTTAGCCAGG aroE 1304857 - 1304066 - | shikimate 5-dehydrogenase HPP12_1216 1305455 - 1304865 - | hypothetical protein TERM 1178 1305371 - 1305359 - G 79 -9.1 -3.88001 | overlap 1305355 TCGCATAAAAACCAA GCGCA GCA TGCGC TAAAGCATACAACAA HPP12_1217 1306510 - 1305464 - | oligopeptide ABC transporter permease protein TERM 1179 1305701 - 1305681 - G 72 -3.1 -5.04987 | overlap 1305683 AACATGCCCAAAAAA GCTTGCGGA AAA CCCGCCACC ACTAACAAAATCGCA TERM 1180 1306259 - 1306285 + g 80 -2.2 -5.61824 | overlap 1306258 1306261 GAGAAGATAGCGCTC CCCTATGGGCTT GTC AAAACCATAGAG TTTTTTTAAATTTTC HPP12_1218 1308291 - 1306507 - | oligopeptide ABC transporter periplasmic oligopeptide-binding protein TERM 1181 1306636 - 1306625 - G 73 -2.2 -5.30616 | TTAGGCAAATAAAAA TGCG GTAT CACA TAAAACCCCCACAAT TERM 1182 1306957 - 1306979 + g 70 -8.4 -3.34398 | overlap 1306955 TTTAGCAAAGGCTAG GGCCAGTCTT TCA AAGGCTGGGC TGTTTAAAAGCAAAG TERM 1183 1307385 - 1307396 + g 70 -5.8 -4.41548 | AGAAAAACCCTTGCA TGCC GCTT GGCA TTTTATGGGCTATGA TERM 1184 1307526 - 1307516 - G 70 -3.2 -5.00616 | GCCCCGCTTAAAAAA GCCT GTA AAGC AATGGTTTCATCTTT TERM 1185 1307604 - 1307617 + g 80 -2.3 -5.53991 | TAGGCAAATTCCTCG CCCAA TAAT TAGGG TTTTTTTGGTAGGTG TERM 1186 1308244 - 1308230 - G 79 -8.6 -4.05446 | TCGCCCAAGTATAAA TAAGGC GTA GCCTTA AGGAAACAAAACACC trpS 1309272 - 1308292 - | tryptophanyl-tRNA synthetase bioC 1310080 - 1309343 - | biotin synthesis protein BioC TERM 1187 1310637 - 1310618 - g 89 -12.2 -3.68908 | AAAGAGCCAGCCAAA GGGCTTTC TGTT GAAAGCCC CAAACAGAACGAAAA secG 1310204 - 1310809 + | preprotein translocase subunit SecG TERM 1188 1311057 - 1311041 - g 70 -5.9 -4.41616 | ACCTGCTCAAAGAAA TTGAACG ATC CATTCAA GAAGCCAATATTGGC frr 1310809 - 1311366 + | ribosome releasing factor pyrE 1311370 - 1311975 + | orotate phosphoribosyltransferase TERM 1189 1312066 - 1312076 + G 74 -4 -5.06735 | GCGTTTGAAGGCCTT TATC ACT GATA TTTTTATGATTTATA HPP12_1224 1311965 - 1312429 + | hypothetical protein HPP12_1225 1312426 - 1313115 + | NAD-dependent deacetylase nuoA 1313223 - 1313624 + | NADH-ubiquinone oxidoreductase chain A nuoB 1313624 - 1314103 + | NADH-ubiquinone oxidoreductase chain B nuoC 1314103 - 1314900 + | NADH-ubiquinone oxidoreductase chain C TERM 1190 1315945 - 1315963 + G 80 -4.6 -5.31456 | opp_overlap 1315945 TGCCCCCACAGAAAG CCCTAA AGGGGAA TTAGGG TTTTTTATCCATTCA nuoD 1314902 - 1316131 + | NADH-ubiquinone oxidoreductase chain D nuoE 1316128 - 1316358 + | NADH-ubiquinone oxidoreductase chain E TERM 1191 1317033 - 1317043 + G 73 -6.8 -4.18197 | opp_overlap 1317033 1317032, overlap 1317021 ACAGCCTTTAAAGAG GGCA TTT TGCC TTTTGAATCAGAGCT nuoF 1316361 - 1317341 + | NADH-ubiquinone oxidoreductase chain F TERM 1192 1318682 - 1318665 - g 77 -6.3 -4.61231 | overlap 1318655 GCACAGCTCTAAAAA GCTTAGA AGAT TCCAAGC AAAGCATTGTGGATG TERM 1193 1318749 - 1318736 - g 76 -2.4 -5.52909 | GAAGAGCGAAAAAAA GCTT TAGAAC AAGC CAATCAAGGGTGCAG nuoG 1317338 - 1319872 + | NADH-ubiquinone oxidoreductase chain G TERM 1194 1320613 - 1320626 + G 80 -2.3 -5.56263 | TTTTTAGCGGAATAC GCGCA TTTA TTCGC TTTTTCTTTTGTGAT nuoH 1319869 - 1320858 + | NADH-ubiquinone oxidoreductase chain H TERM 1195 1321372 - 1321384 + G 74 -4.8 -4.71482 | AGACGCTAAAAACTG CTCG CATGC CGAG TTTTTAGGCTTTGGT nuoI 1320869 - 1321531 + | NADH-ubiquinone oxidoreductase chain I TERM 1196 1321622 - 1321638 + G 75 -2.9 -5.29846 | overlap 1321623 1321625 CTACGCCATCACCGC TCTTGCT AGC AGCATGG TTTTTATTTCCGCTT nuoJ 1321524 - 1322072 + | NADH-ubiquinone oxidoreductase chain J nuoK 1322069 - 1322371 + | NADH-ubiquinone oxidoreductase chain K TERM 1197 1323660 - 1323672 + G 71 -4.1 -5.00616 | TTATAGCTTCAGGCT CATCA TGC TGGTG TTTTTTGCGCCCAAA TERM 1198 1323864 - 1323879 + G 76 -9 -3.63515 | opp_overlap 1323860 TCTTTTAATCAGTAT CACCAC CATA GTGGTG TTATTGAGCATCGCC nuoL 1322374 - 1324212 + | NADH-ubiquinone oxidoreductase chain L TERM 1199 1324274 - 1324284 + G 71 -6.8 -4.06687 | TCCCCATGCTGAGCG CGCT ATT AGCG TTCTTTATGAGCGAT TERM 1200 1324318 - 1324331 + G 71 -6.7 -3.97659 | GCGAGCAGGGCGTAT GCGAT TGTC ATCGC TTTGATTGAATTGTT TERM 1201 1324449 - 1324470 + G 78 -3.7 -5.19251 | gap 1 CGTGAATTACCATGT GGGCGTTGAT GGC ATCG-CGCTC TTTTTGTTGCTCTTA TERM 1202 1324530 - 1324546 + G 75 -5.9 -4.79953 | TTATGTCAAAGAGCG TCGTAAA GAC TTTGCGA TTTGTTTGTTGTTGT nuoM 1324216 - 1325754 + | NADH-ubiquinone oxidoreductase chain M TERM 1203 1326272 - 1326288 + G 77 -5.1 -4.93547 | GCGAGCGCGTTTTTT GCTATGG GGG CTATGGC TTTTTACTTGCTTAC TERM 1204 1327021 - 1327033 + G 85 -6.9 -5.011 | GATGTTAGTTAATAG CGCGG TGG CTGCG TTTTATTATTTCCGT nuoN 1325741 - 1327219 + | NADH-ubiquinone oxidoreductase chain N TERM 1205 1327381 - 1327371 - g 86 -8.2 -4.91873 | TATACCAATGAAAAA CCGC CAA GCGG GATTGAAGCGTCTTT TERM 1206 1328189 - 1328203 + G 74 -5 -4.82901 | GAGCAACGCTAACAT GCTTTT TAA AGAAGC TTTTTCTAACGCCAA TERM 1207 1328230 - 1328247 + G 70 -8.4 -3.35813 | opp_overlap 1328228 1328230 CCAAAGACAAAGAGA GCGCGA GTGAAA TCGCGC TTAATTGGGCTGAAG TERM 1208 1328247 - 1328230 - g 72 -8.4 -3.45621 | opp_overlap 1328230, overlap 1328228 CCAAAGACAAAGAGA GCGCGA GTGAAA TCGCGC TTAATTGGGCTGAAG TERM 1209 1328958 - 1328943 - g 76 -3.2 -5.27335 | overlap 1328945 TCGCTCAAAGAAAAA GCGCAA ATCA TTGCCC TAAACGCTTTAAAAG TERM 1210 1329275 - 1329261 - g 71 -4.2 -4.96646 | CTAGAGAATGAAAAA GACCCT AAA AGCGTC AAAATTTATGCCACA TERM 1211 1329405 - 1329393 - g 77 -7.7 -4.24326 | AAAGACTATTCAAAA GCGTT AGA AACGC TAGACAAGCTTTTAA pflA 1327209 - 1329614 + | paralysed flagella protein TERM 1212 1329764 - 1329775 + G 76 -3.6 -5.27938 | GGGCATGACGCAAGG GTGC ATGG GCGC TTTTTGTTTGAAGCT TERM 1213 1330755 - 1330743 - g 89 -5.5 -5.4505 | CGCCTGAAGAAAAAA TCGCC GTG AGCGA AGAAGAAAAATTTGA HPP12_1241 1329617 - 1330993 + | phosphomannomutase HPP12_1242 1331291 - 1331578 + | hypothetical protein trpA 1332597 - 1331809 - | tryptophan synthase alpha subunit TERM 1214 1332115 - 1332156 + g 71 -9.6 -2.76833 | opp_overlap 1332119, overlap 1332119 CATAGCGGCTTGTTC TAAATCTTTAACGCTCGC ATTAGG GCTAGCGATAAAGATTTG CTTGATTTGGTGTTT TERM 1215 1332119 - 1332152 + g 75 -8.2 -4.04997 | opp_overlap 1332119, overlap 1332115 GCGGCTTGTTCTAAA TCTTTAACGCTCGC ATTAGG GCTAGCGATAAAGA TTTGCTTGATTTGGT trpB 1333775 - 1332594 - | tryptophan synthase beta subunit trpC 1335134 - 1333776 - | bifunctional N-(5'-phospho-ribosyl)anthranilate isomerase / indole-3-glycerol phosphate synthase trpD 1336134 - 1335127 - | anthranilate phosphoribosyltransferase trpG 1336715 - 1336131 - | anthranilate synthase component II trpE 1338214 - 1336712 - | anthranilate synthase component I TERM 1216 1337799 - 1337787 - G 76 -2 -5.4477 | AAATCTTCAAAAAAA TTGA GCATT TCAA AAGAAAAAACGCCCG TERM 1217 1337889 - 1337866 - G 77 -6 -4.58283 | overlap 1337886 TAACGCTTTTAAAAA GCCCCCTTAA AGCG TCAAAAGGGC TAGGCTCAAAGAGTT TERM 1218 1338253 - 1338239 - R 75 -5 -4.94262 | TACACTAAAAATAAA CTCGTA TTT TACAAG AAATAGATAAATGGG HPP12_1249 1339894 - 1338437 - | hypothetical protein HPP12_1250 1341030 - 1339990 - | hypothetical protein TERM 1219 1340767 - 1340791 + g 71 -7.1 -3.80945 | overlap 1340768 AGCGTCAATGGATTT GCGTTTGAGAG TAG CGCTCAAACGG TTGTCTTCTATAATG TERM 1220 1340768 - 1340790 + g 77 -10.6 -2.87844 | overlap 1340767 GCGTCAATGGATTTG CGTTTGAGAG TAG CGCTCAAACG GTTGTCTTCTATAAT HPP12_1251 1341837 - 1341100 - | acid phosphatase lipoprotein TERM 1221 1341406 - 1341421 + g 82 -4 -5.47218 | ACTTTTGAGCGTTTT TAAGGT GAAT GCCTTA TTTTTTTGCGTGCGG TERM 1222 1342517 - 1342546 + G 81 -6.6 -4.82901 | gap 1, overlap 1342518 GCTCAATAGACTTTT TGCAAGAGATAGA TATTT TCT-TCTCTTGCG TTTTTCTAACAGCAC HPP12_1252 1341961 - 1342623 + | hypothetical protein HPP12_1253 1343065 - 1342574 - | transcriptional regulator TERM 1223 1343427 - 1343446 + H 79 -9.4 -3.39142 | TTTAAGATTGGCTAT CCTTTGTA ATCA TACAAAGG TTAATTCCATCTCGC HPP12_1254 1343908 - 1344279 + | hypothetical protein HPP12_1255 1344303 - 1344788 + | hypothetical protein TERM 1224 1344842 - 1344829 - f 76 -2.5 -5.52384 | GGGGGAGTAAAAAAA TTAAA AAAC TTTAA AGCGCATTCTCACTG TERM 1225 1345128 - 1345140 + G 74 -6.3 -4.39414 | opp_overlap 1345127 1345128 TTTTGCCGGAGAAAG GCAAA CGA TTTGC TTTGTGTTTGGTCTT pnuC 1344973 - 1345635 + | nicotinamide mononucleotide transporter TERM 1226 1345847 - 1345889 + G 75 -3 -5.20328 | gap 2, opp_overlap 1345854, overlap 1345849 1345854 AAACAGCAACGATTT GTC--CAAAGCCTTTTTTTA TGCTT TGAATAAAGGCTTTGATGAC TTTATTTTTTTAGGG HPP12_1257 1345623 - 1346237 + | hypothetical protein TERM 1227 1346741 - 1346752 + T 79 -4.4 -5.28315 | opp_overlap 1346741 TTTTGATTACAGAAA TGCT TTTT AGCA TTTTTTAAATTTTAT rplQ 1347224 - 1346874 - | 50S ribosomal protein L17 rpoA 1348258 - 1347224 - | DNA-directed RNA polymerase alpha subunit rpsD 1348896 - 1348270 - | 30S ribosomal protein S4 rpsK 1349301 - 1348906 - | 30S ribosomal protein S11 rpsM 1349686 - 1349324 - | 30S ribosomal protein S13 infA 1350100 - 1349882 - | translation initiation factor If-1 TERM 1228 1350058 - 1350039 - G 77 -7.8 -4.14511 | opp_overlap 1350045 AACTCCACCTTAAAA GTGGCGTT AGGC AACGCCTC AATCACTTTCCCATC map 1350861 - 1350100 - | methionine aminopeptidase secY 1352123 - 1350861 - | preprotein translocase SecY subunit rplO 1352567 - 1352166 - | 50S ribosomal protein L15 rpsE 1353046 - 1352585 - | 30S ribosomal protein S5 rplR 1353399 - 1353043 - | 50S ribosomal protein L18 rplF 1353949 - 1353413 - | 50S ribosomal protein L6 rpsH 1354355 - 1353960 - | 30S ribosomal protein S8 rplE 1355107 - 1354562 - | 50S ribosomal protein L5 TERM 1229 1354881 - 1354891 + g 73 -2.4 -5.22943 | opp_overlap 1354881, overlap 1354888 TCTCTGATCTTAAAA CCCG CAA CGGA TTTTTTCGCTTTAGT rplX 1355341 - 1355120 - | 50S ribosomal protein L24 rplN 1355708 - 1355316 - | 50S ribosomal protein L14 rpsQ 1355971 - 1355711 - | 30S ribosomal protein S17 rpmC 1356185 - 1355985 - | 50S ribosomal protein L29 rplP 1356597 - 1356172 - | 50S ribosomal protein L16 rpsC 1357304 - 1356600 - | 30S ribosomal protein S3 rplV 1357676 - 1357308 - | 50S ribosomal protein L22 rpsS 1357967 - 1357686 - | 30S ribosomal protein S19 rplB 1358808 - 1357978 - | 50S ribosomal protein L2 TERM 1230 1358007 - 1358019 + g 87 -3.3 -5.73978 | TTCTGGAAATGATGA GCTTG TCG CTAGC TTTTTTCTTTCTCGT rplW 1359106 - 1358825 - | 50S ribosomal protein L23 rplD 1359757 - 1359110 - | 50S ribosomal protein L4 TERM 1231 1359699 - 1359715 + g 73 -2.2 -5.28942 | CCCTCATATCTTTTA GGTAAC TCCAC GCTACC TTTTTCTTTCAAATG rplC 1360367 - 1359792 - | 50S ribosomal protein L3 rpsJ 1360718 - 1360404 - | 30S ribosomal protein S10 TERM 1232 1361596 - 1361621 + G 83 -3.1 -5.53991 | overlap 1361599 1361600 CCTTTATAAATTGTT GCACGCGCTAG AAAA CCAGCGCATCC TTTTTTTAGTCCCTA TERM 1233 1361780 - 1361795 + G 72 -3.2 -5.0916 | AGCCATGAGCTTTAC TCCCAT GATA ACGGGA TTTTTATCTTGCACA TERM 1234 1361970 - 1361982 + G 83 -4.9 -5.31519 | CCCCCTACAAACACC TCAAT TTC ATTGA TTTTTCTTTGGATAT HPP12_1285 1360928 - 1362016 + | hypothetical protein HPP12_1286 1362205 - 1362783 + | hypothetical protein rnhB 1363371 - 1362757 - | ribonuclease hII HPP12_1288 1363652 - 1363479 - | hypothetical protein fumC 1365065 - 1363674 - | fumarase HPP12_1290 1365240 - 1365617 + | hypothetical protein TERM 1235 1365655 - 1365670 + G 71 -6.1 -4.28589 | opp_overlap 1365654 1365655 GCGTTTTATAAAAGG GGCGT TTCAAT ACGCC TTTTAAGTGCTTTTT TERM 1236 1366805 - 1366826 + G 85 -8.8 -4.32857 | CCCAGCTTGAAACCT TAAGCGCT CTAAAT AGCGCTTA TTTGTCTTTACAAAA HPP12_1291 1365622 - 1366860 + | hypothetical protein czcB 1366857 - 1367873 + | cobalt-zinc-cadmium resistance protein TERM 1237 1368631 - 1368615 - g 79 -5.1 -5.00884 | opp_overlap 1368618, overlap 1368618 1368619 1368620 1368622 ATTGTCGTTAAAAAA GAAGGGA CTA TCCCTTT AAAAATCAAAGATAT TERM 1238 1368628 - 1368618 - g 79 -6.8 -4.61482 | opp_overlap 1368618, overlap 1368615 1368619 1368620 1368622 GTCGTTAAAAAAGAA GGGA CTA TCCC TTTAAAAATCAAAGA TERM 1239 1370621 - 1370634 + G 75 -8.1 -4.11216 | CGTGGCGGCGTTAGT GGGCT TTTT AGCCC TTTTAGGGGTAGCGA TERM 1240 1370902 - 1370916 + G 87 -6.4 -5.20333 | opp_overlap 1370902 GGGGAATGATAAGCA GCGTTG TTT TAACGC TTTTTATTATCCCTA czcA 1367874 - 1370981 + | cobalt-zinc-cadmium resistance protein HPP12_1294 1371318 - 1370962 - | branched-chain amino acid transport protein HPP12_1295 1371998 - 1371312 - | branched-chain amino acid transport protein dnaJ 1373118 - 1372009 - | CO-chaperone and heat shock protein DnaJ TERM 1241 1372229 - 1372247 + g 70 -3.1 -4.87893 | overlap 1372224 1372223 1372241 GCAAAAGTCTGCCTG TCTCTGG CGTTT CTAGGGA TTTTTAATTCCAGTT TERM 1242 1372891 - 1372905 + g 83 -6.4 -5.05782 | overlap 1372879 1372878 GCTCTGGCTCGTGCC GGCTTG GTT TAAGCC TTTTTTACCATACCT TERM 1243 1373462 - 1373472 + G 76 -2.4 -5.40072 | opp_overlap 1373469 AACAGCACCCTAACT AGCC AAA GGCG TTTTTTTAACGCCAG TERM 1244 1373485 - 1373469 - g 70 -8 -3.71527 | opp_overlap 1373462 CCCTAACTAGCCAAA GGCGTT TTTTT AACGCC AGCCAGATCCGCCTT TERM 1245 1374008 - 1373994 - g 75 -5.7 -4.70879 | TGGAAACTTTAAAAA CGCAT TTTTT ATGCG ATAAAGAAAATCTCA TERM 1246 1374075 - 1374061 - g 77 -7.8 -4.28361 | CCAACGCTACCAAAA CGCCCT TAT AGAGCG AGACAAAGAATTAAA HPP12_1297 1373243 - 1374379 + | hypothetical protein trmU 1375511 - 1374423 - | tRNA(5-methylaminomethyl-2-thiouridylate)-methylt ransferase TERM 1247 1374607 - 1374620 + g 71 -3.9 -4.88293 | opp_overlap 1374607 TCGCCACTTTTAAAA TCTTT CATT AAAGA TTTGTTTTTAGCCTT TERM 1248 1375299 - 1375311 + g 79 -5.5 -4.84527 | GCCTAAAAACTCGCA CGCTT TTT GAGCG TTTTTAATGTATAAA HPP12_1299 1375591 - 1376352 + | hypothetical protein HPP12_1300 1376873 - 1376349 - | nicotinate-nucleotide adenyltransferase HPP12_1301 1377303 - 1376857 - | nickel uptake regulation protein exbB-2 1377628 - 1378065 + | biopolymer transport protein ExbB exbD-2 1378062 - 1378451 + | biopolymer transport protein ExbD TERM 1249 1378487 - 1378503 + GF 85 -9.5 -3.90874 | TTTTAATTTCTTTTG CCCTATA CGC TATAGGG TTTGGCTATTTTTTA tonB 1378417 - 1379277 + | siderophore-mediated iron transport protein TERM 1250 1379272 - 1379283 + F 70 -4.4 -4.64861 | opp_overlap 1379272 TATAGCTTGAAAGAA GACT GATT AGTC TTTCTTTTAAGGGCG TERM 1251 1380078 - 1380053 - g 77 -6.2 -4.54727 | gap 1, opp_overlap 1380060, overlap 1380054 CGCTTTAAACCAAAA CCAAGG-AGGC GGGAT GCCTGCCTTGA ATAGCTCCAAAAATA hopN 1379460 - 1381547 + | outer membrane protein HopN HPP12_1306 1382414 - 1381686 - | integral membrane protein TERM 1252 1382319 - 1382309 - G 71 -4 -4.84359 | TCACCGTGATAAAAA TGAT ATT ATCA ATCCCTAGAACAATC TERM 1253 1382419 - 1382432 + r 70 -3.8 -4.87389 | opp_overlap 1382419 AAAAATTCCATAAAA GGCT ACAACC AGCC TTTCTTTTTAAAATA corA 1383377 - 1382421 - | magnesium and cobalt transport protein pgk 1384601 - 1383393 - | phosphoglycerate kinase gap 1385609 - 1384617 - | glyceraldehyde-3-phosphate dehydrogenase ung 1386399 - 1385698 - | uracil-DNA glycosylase plsC 1387112 - 1386396 - | 1-acyl-SN-glycerol-3-phosphate acyltransferase TERM 1254 1387004 - 1386975 - G 83 -3.3 -5.54192 | opp_overlap 1386975 1386991, overlap 1386982 AGTAAGGGAAAAAAA GCACGAACAAGCC CTAC GGCTGGAGCGGGC GTTATTGTTTTTGCG HPP12_1312 1388262 - 1387099 - | hypothetical protein TERM 1255 1387395 - 1387381 - G 70 -2.7 -5.15167 | overlap 1387384 CAGCACCAAGAAAAA CACGC ACAGA GCGAG CAGTGCCACGTTAGA TERM 1256 1388251 - 1388271 + g 70 -5.5 -4.44667 | opp_overlap 1388240 1388251 TAACGATTTTTCAAA TAAAAACCC CAT GAGTTTTTA TTTCTTCTTAGGCGC HPP12_1313 1389633 - 1388269 - | carboxyl-terminal protease TERM 1257 1388658 - 1388669 + g 76 -4.4 -5.02074 | GCATCTGCACGCTTC CCTT ACCA AAGG TTTTTTCACCGATAA TERM 1258 1389539 - 1389553 + g 81 -2.7 -5.64006 | overlap 1389540 TGCGGATCTTCTTTG ACCGG CTTGA CCGGC TTTTTTTCCTTAACT HPP12_1314 1390261 - 1389854 - | type II R-M system restriction endonuclease HPP12_1315 1390851 - 1390306 - | hypothetical protein HPP12_1316 1390988 - 1390860 - | hypothetical protein HPP12_1317 1391214 - 1391041 - | hypothetical protein HPP12_1318 1391668 - 1391189 - | hypothetical protein TERM 1259 1393149 - 1393160 + H 70 -4.4 -4.74787 | opp_overlap 1393149 AAAAATCTTTTAAAA GCTT TAGC AAGC TTTCTTTGTCTTTAT TERM 1260 1393350 - 1393376 + H 82 -8.8 -3.92075 | TATTCAAATCATTTT GGGCTAAAAAGT CGT ATTTTTCAGCCC TTTCTCCATAAACAT TERM 1261 1394426 - 1394443 + H 74 -6.3 -4.3467 | gap 1, opp_overlap 1394410 1394406, overlap 1394415 1394426 TTCACCACAGAATCT GGG-GTGT AAT ACACGCCC TTTTCCTCTCGCAAT TERM 1262 1395551 - 1395531 - g 83 -6.3 -5.07486 | CATTGTGAAGAAAAA TCTCTTAAA GGC TTTAAAAGA CAAAGAATGTGTAGG HPP12_1320 1394833 - 1395621 + | hypothetical protein HPP12_1321 1395624 - 1395854 + | hypothetical protein HPP12_1322 1395847 - 1396335 + | hypothetical protein virB2-2 1396323 - 1396607 + | VirB2 type IV secretion protein virB3-2 1396619 - 1396882 + | VirB3 type IV secretion protein HPP12_1325 1396894 - 1397130 + | hypothetical protein TERM 1263 1397985 - 1398010 + G 82 -11.9 -3.07401 | opp_overlap 1397978 1397989 GGGATTAAGGCTTAT GAGAGCGAAGA AATT TCTTCGCTCCC TATATCTACTCTTTT TERM 1264 1398006 - 1397989 - g 71 -9.9 -2.79831 | opp_overlap 1397985, overlap 1397978 TTAAGGCTTATGAGA GCGAAGA AATT TCTTCGC TCCCTATATCTACTC virB4-2 1397130 - 1399706 + | VirB4 type IV secretion ATPase virB7-2 1399703 - 1399843 + | VirB7 type IV secretion protein virB8-2 1399836 - 1400972 + | VirB8 type IV secretion protein virB9-2 1400969 - 1402624 + | VirB9 type IV secretion protein TERM 1265 1403553 - 1403567 + GF 78 -2.8 -5.43866 | opp_overlap 1403553 TAGGCAAAATAGAAA GGGT GATGGCA ACCC TTTTTTTGGGGATTA virB10-2 1402591 - 1403829 + | VirB10 type IV secretion protein HPP12_1331 1403813 - 1405597 + | hypothetical protein HPP12_1332 1405501 - 1406055 + | hypothetical protein TERM 1266 1406223 - 1406204 - g 93 -10.8 -4.76193 | AATTAGAACACAAAA TGGAGCAA AAAA TTGCTCCA CAAAATACCCTTAAA TERM 1267 1406278 - 1406241 - g 82 -7.9 -4.62904 | gap 1, opp_overlap 1406248 AAATACCCTTAAAAA GCAACAA-TCAGCTCCTT TAC AAAGTGCTGAGTTGTTAC AAAGTCAAGTTAAAA HPP12_1333 1406068 - 1407030 + | hypothetical protein TERM 1268 1407091 - 1407073 - g 72 -4.6 -4.69656 | overlap 1407074 AATCACGCAAGAAAA CGAGTTAA AGA TTAACTCC AATAATCAAAACCAA HPP12_1334 1407047 - 1407322 + | hypothetical protein virB11-3 1407327 - 1408271 + | VirB11 type IV secretion ATPase HPP12_1336 1408268 - 1408786 + | hypothetical protein TERM 1269 1409424 - 1409440 + G 70 -8.1 -3.62046 | CACTTGCTATTTCAA TCCTTTT GAT AAAAGGA TTGTTGAAAAGATGA TERM 1270 1409584 - 1409594 + G 74 -4.6 -4.96762 | opp_overlap 1409584 CAAGTAGTAACCAAA GGGC ATA GCTC TTTTTATGATGTCTC virD4-2 1408783 - 1411026 + | VirD4 coupling protein TERM 1271 1411385 - 1411401 + F 70 -3.6 -4.86731 | opp_overlap 1411385 AAGTGGGATTAACAA GGGCTT ACAAA ACGCCC TTTTATTTGAAAACA TERM 1272 1411803 - 1411791 - f 71 -3.4 -5.19916 | AAAAGATTTAAAAAA CTCT GTTGT AGAG ACTAAACCTAAAAAG TERM 1273 1413252 - 1413266 + GF 79 -8.6 -3.73224 | AGGCACAGGAGATTG GCATAG TAG CTATGC TTTAATGGAGAATGC HPP12_1339 1413163 - 1413633 + | hypothetical protein TERM 1274 1413878 - 1413864 - gT 75 -2.8 -5.22312 | overlap 1413866 ATTCATATTAAAAAA GACACT GAT AGTGTG GGGCGTTATATGGTG TERM 1275 1414402 - 1414379 - gT 76 -6.7 -4.43309 | CAATTCTAATGAAAA CACCTACAC ACCTAA GCGTAGGCG ATAAGTAACCTTATT HPP12_1340 1413603 - 1414406 + | hypothetical protein HPP12_1341 1415145 - 1414480 - | hypothetical protein HPP12_1342 1415401 - 1415123 - | hypothetical protein TERM 1276 1415182 - 1415192 + gr 70 -5.4 -4.43681 | GTAATCTTTCTAGTT GCTT TAA AAGC TTTTGCTCTTGGGTG HPP12_1343 1415765 - 1415334 - | hypothetical protein TERM 1277 1415426 - 1415439 + gH 79 -9.5 -3.3539 | overlap 1415424 CTAGGGCTTTATTTT CGCCC TCTA GGGCG TATCTTTCTAGCTCT HPP12_1344 1415750 - 1416160 + | hypothetical protein HPP12_1345 1416794 - 1416165 - | hypothetical protein HPP12_1346 1417178 - 1416897 - | hypothetical protein TERM 1278 1417540 - 1417526 - g 76 -7.2 -4.26019 | opp_overlap 1417526 TAATCACACCTAAAA TCTCTA ATT TAGAGA TTTACTTACGCAACG TERM 1279 1417526 - 1417540 + G 71 -7.2 -3.90112 | opp_overlap 1417526 TAATCACACCTAAAA TCTCTA ATT TAGAGA TTTACTTACGCAACG HPP12_1347 1417399 - 1417788 + | hypothetical protein HPP12_1348 1417796 - 1418086 + | hypothetical protein HPP12_1349 1418215 - 1418466 + | hypothetical protein HPP12_1350 1418394 - 1419248 + | hypothetical protein TERM 1280 1420182 - 1420197 + F 71 -5.4 -4.59773 | overlap 1420180 TAAGCTTTCTTTGGT CTTAGC AAAG GCTAGG TTTTTAAGCGTAAAA TERM 1281 1420891 - 1420879 - f 70 -2 -5.22289 | CACTAAATACAAAAA TTGA ATTTA TCAA CGATTAAATAGTTTT TERM 1282 1420973 - 1420988 + F 71 -9 -2.96452 | opp_overlap 1420972 1420973 TATTAGATATGAAAG CGGAAC TTAA GTTCCG TATAGTTATAAAAAT TERM 1283 1421035 - 1421010 - f 78 -10.6 -2.77439 | opp_overlap 1421015, overlap 1421009 1421015 TATAAAAATATTAAG GGAAAGAAAG GTTTAT CTTTCTTTCC TAACCTATTGAGTAA TERM 1284 1421180 - 1421167 - g 74 -3.9 -5.01676 | AATCAAAAAAAAGAA CTTTT GATT AAAAG AGACAAACTGACTGA HPP12_1352 1421131 - 1421259 + | hypothetical protein TERM 1285 1421588 - 1421599 + T 78 -2.2 -5.63236 | opp_overlap 1421577 TTAAGCTCTACAAGG CGTT TTAA AGCG TTTTTGTTTTTAGGT TERM 1286 1421624 - 1421638 + T 70 -4.2 -4.80487 | TTAGGTTAATAGTTT GCCTTA TCT TATGGC TTTATTTTGATTGTG TERM 1287 1421745 - 1421715 - T 76 -7.7 -4.08557 | opp_overlap 1421715 1421723, overlap 1421722 TTTGTGAAAGAACAA GAATAAACCCCTT TAATC AAAGGGTATATTC TTTATTAAGAACATT virD2-2 1423818 - 1421785 - | relaxase TERM 1288 1421894 - 1421907 + g 90 -5.3 -5.69262 | overlap 1421879 TTAGCTTGTTGTTTA GCTAA TTCT TTAGC TTTTTCTTTTTCTAG TERM 1289 1424828 - 1424814 - R 70 -4.2 -4.66264 | opp_overlap 1424814 TAAAATTCTTAAAAA TGCTAG AAA CTTGCA CTTTTTCAATGCTAG nadC 1426257 - 1425436 - | nicotinate-nucleotide pyrophosphorylase TERM 1290 1425486 - 1425526 + g 70 -8.9 -3.26545 | opp_overlap 1425469 1425485 1425486 CTTGATGGATTAAAG CCCCTACGCTAATGGCATC CAC GCCGCTTTTAGCGTAGGCG TTGATGGTCTCTAGC TERM 1291 1426017 - 1426034 + g 70 -8.5 -3.27489 | opp_overlap 1426014, overlap 1426015 GCATGCTAAAATCCC CCCTAAT TTCC ATTAGGG TGTCTTTAGGCTTGA nadA 1427267 - 1426257 - | quinolinate synthetase A TERM 1292 1426794 - 1426812 + g 74 -4 -5.07652 | CAAGCATTTATCCGG TAGAAAAA AGA TTTTTTTA TTTTGTTTTAAAGCG TERM 1293 1427223 - 1427207 - G 71 -6.5 -4.28548 | AGTGAGCCACTAAAA GCGCG TCTAAAT CGCGC AACAATTCCACAATA psd 1428060 - 1427257 - | phosphatidylserine decarboxylase proenzyme HPP12_1357 1428560 - 1428054 - | hypothetical protein HPP12_1358 1429124 - 1428573 - | hypothetical protein TERM 1294 1428730 - 1428748 + gr 73 -2.4 -5.20328 | CAACGCCCATAGTAA GTTTGAGA CGC TATCAAGC TTTGTTTTTTTAAGC ubiA 1429944 - 1429060 - | 4-hydroxybenzoate octaprenyltransferase TERM 1295 1429452 - 1429432 - GR 80 -6.2 -4.81249 | CCCTAAAGCCAAAAA GACATTCC ATAAA GGAATATC CCCTAAAACCGCCAC comE 1431284 - 1429971 - | competence locus E ComE3 dnaB 1432741 - 1431281 - | replicative DNA helicase HPP12_1362 1434146 - 1432752 - | integral membrane protein HPP12_1363 1435261 - 1434149 - | histidine kinase sensor protein TERM 1296 1434533 - 1434548 + g 74 -4.6 -4.95484 | overlap 1434535 GTGGTAGTCTATCAT CTCGCT AAAA AGCGTG TTTTCTTTGGTAATC TERM 1297 1435288 - 1435309 + r 93 -5.9 -5.88471 | opp_overlap 1435288 1435287 AAGAGCCTAAATAAG TCCCTAAAA AAAG TTTGAGGGA TTTTTTTTCATAGTG HPP12_1364 1435958 - 1435317 - | response regulator mod-3 1436023 - 1438488 + | type III R-M system methyltransferase TERM 1298 1439449 - 1439434 - g 71 -4.8 -4.64495 | opp_overlap 1439441 1439442, overlap 1439435 ATTGAAGAAAAACAA CTTAAA CGCT TTTAAG GAATTAAAAGATTTA TERM 1299 1440388 - 1440372 - g 78 -2.9 -5.42265 | overlap 1440383 TCAAATTAGAAAAAA CGCACAT AAC ACACGCG TTATTCGTGCCTTGC TERM 1300 1440487 - 1440472 - g 79 -3.4 -5.49729 | AATGAGCGAAAAAAA TTTTAA GGAT TTAAAA GAGTATTTTCATTTA TERM 1301 1440686 - 1440675 - g 76 -3.6 -5.27477 | ACCCCAATCAAAAAA CGCC TAAA GACG AGTTTAACGCCCTAG TERM 1302 1440840 - 1440828 - g 83 -4.8 -5.29445 | CTTTAAGAACAAAAA TCGC ACAAG GCGA GATCGATCCTTATGA res-2 1438499 - 1441306 + | type III R-M system restriction enzyme mreC 1442206 - 1441460 - | rod shape-determining protein MreC TERM 1303 1441507 - 1441520 + g 79 -6.7 -4.56597 | opp_overlap 1441518 TTAAAAGTTTGGCTT CGCTT AAAA AAGCG TTTTTCAACACCGCG TERM 1304 1441531 - 1441518 - G 70 -3.1 -5.00616 | opp_overlap 1441507 GCTTCGCTTAAAAAA GCGTT TTTC AACAC CGCGCTTTTATAAGT mreB 1443253 - 1442210 - | rod shape-determining protein MreB TERM 1305 1442853 - 1442865 + g 70 -9.1 -3.24411 | overlap 1442851 1442852 ACCTCTCTAGCTCCC GCGCT TAA AGCGC TCTCTTTAACCGCAT clpX 1444642 - 1443296 - | ATP-dependent clp protease ClpX TERM 1306 1443697 - 1443713 + g 73 -6.6 -4.22314 | opp_overlap 1443696 1443697 GGGTTTGGACTAAAT GCAAGA TCGCT TCTTGC TCTTTTTTGCTCATC TERM 1307 1443744 - 1443766 + g 78 -4 -5.243 | opp_overlap 1443744 1443749, overlap 1443746 TTTTCTTGAGTGAAA CCCAACACGT TTT GCGTGGTGCG TTTTTTAATGATTTC lpxA 1445456 - 1444644 - | UDP-N-acetylglucosamine acyltransferase fabZ 1445938 - 1445459 - | (3R)-hydroxymyristoyl-(acyl carrier protein) dehydratase fliW-2 1446508 - 1446119 - | flagellar assembly protein FliW TERM 1308 1446884 - 1446872 - H 80 -2.7 -5.66338 | AAAGATAAGAAAAAA TAACC ATG AGTTA TTCAAAAAATTTAAT TERM 1309 1447044 - 1447061 + G 77 -4.9 -4.84363 | overlap 1447029 TCTTTTGGTATCAAG GGATTTT GAGA GAAATCC TTTTTGCTAATTTAG TERM 1310 1447488 - 1447463 - g 76 -3.1 -5.25803 | opp_overlap 1447479 AATGTCTATAAAAAA CGCCACAAGCC TGAG GGCGTGAAACG CTATTTAGAAAGAAT comL 1446917 - 1447579 + | competence lipoprotein ComL TERM 1311 1447966 - 1447929 - g 79 -5.7 -4.86731 | gap 1, opp_overlap 1447933 1447935, overlap 1447933 1447935 GCCTGCCAAAGAAAA CGAACAGGGCTTTTTAGA AGC TCAAATAAGCCCTATT-G AATATTTAGAATACG TERM 1312 1447963 - 1447933 - g 71 -7.6 -3.88331 | opp_overlap 1447933 1447935, overlap 1447929 1447935 GCCAAAGAAAACGAA CAGGGCTTTTTAGA AGC TCAAATAAGCCCTA TTGAATATTTAGAAT lon 1447621 - 1450125 + | ATP-dependent protease Lon tyrA 1450134 - 1450961 + | prephenate dehydrogenase TERM 1313 1451290 - 1451306 + T 72 -9.5 -2.72379 | opp_overlap 1451288, overlap 1451298 AGCGGTTTTAATACT TCTTAGC GTT GCTAAGA TACTTAGGCAATTCA HPP12_1376 1452145 - 1451282 - | endonuclease G TERM 1314 1451446 - 1451456 + g 73 -6.8 -4.29738 | opp_overlap 1451445 GGATATAAAAGCATT CGCT TTT AGCG TTTTCATAGCTATCC mod-4 1454288 - 1452411 - | type III R-M system methyltransferase TERM 1315 1454540 - 1454530 - H 71 -5.4 -4.56597 | GCGTTTGGGCAAAAA GGAT AAA ATCC GGCTCAAAACCTTGT bioB 1457029 - 1457877 + | biotin synthetase TERM 1316 1458186 - 1458163 - g 78 -3 -5.51165 | opp_overlap 1458175, overlap 1458167 AAAATTTTAAAAAAA CAGACGTGAC TTTA GGCACGCTTG AAGAGGTGTCTATTG TERM 1317 1458346 - 1458362 + G 73 -2.1 -5.27779 | overlap 1458348 TAGTGTTTTTATTCG CTCTGCC TTT GGTGGTG TTTTTTGATATTAAG rbn 1457877 - 1458755 + | ribonuclease N TERM 1318 1458922 - 1458898 - f 74 -2.1 -5.44198 | opp_overlap 1458905, overlap 1458905 AATAAAGAATAAAAA TCTAAAACGCT AGA AGCGTTTCTTA CAATCAAACTAAAGA TERM 1319 1458905 - 1458915 + F 71 -6.8 -4.1822 | opp_overlap 1458898 1458905 AATAAAAATCTAAAA CGCT AGA AGCG TTTCTTACAATCAAA TERM 1320 1458915 - 1458905 - f 76 -6.8 -4.52505 | opp_overlap 1458905, overlap 1458898 AATAAAAATCTAAAA CGCT AGA AGCG TTTCTTACAATCAAA TERM 1321 1459544 - 1459495 - f 87 -11 -3.47349 | opp_overlap 1459495 1459496, overlap 1459496 1459501 TCTCTAAAGGCACAA GGAAAAGGGAGCTAAAGATAAA AACGCA TTTACCCTTAACTCCCCTTTCT CTTTATAGGGAGCTG TERM 1322 1459543 - 1459496 - f 95 -14.5 -2.68088 | opp_overlap 1459496 1459495, overlap 1459495 1459501 CTCTAAAGGCACAAG GAAAAGGGAGCTAAAGATAAA AACGCA TTTACCCTTAACTCCCCTTTC TCTTTATAGGGAGCT TERM 1323 1459538 - 1459501 - f 100 -10.8 -4.50661 | opp_overlap 1459496 1459495, overlap 1459496 1459495 AAGGCACAAGGAAAA GGGAGCTAAAGATAAA AACGCA TTTACCCTTAACTCCC CTTTCTCTTTATAGG HPP12_1381 1463709 - 1464203 + | hypothetical protein HPP12_1382 1464203 - 1465996 + | hypothetical protein HPP12_1383 1466136 - 1466765 + | hypothetical protein HPP12_1384 1466750 - 1467046 + | hypothetical protein TERM 1324 1467170 - 1467184 + T 79 -4.2 -5.30616 | CTTTGCGCGTTATTT CGCATT CAA AAGGCG TTTTTCTTTAAATCC HPP12_1385 1467610 - 1467164 - | 7-cyano-7-deazaguanine reductase HPP12_1386 1467670 - 1468011 + | hypothetical protein miaA 1468082 - 1468906 + | tRNA delta(2)-isopentenylpyrophosphate transferase TERM 1325 1469987 - 1470003 + G 85 -3.7 -5.61596 | opp_overlap 1469988, overlap 1469988 TGGGTTTTAGGGTAA AGACTTT TTT AAAGTCC TTTTTTTGTAAGACT TERM 1326 1469988 - 1470002 + G 71 -7.2 -3.95873 | opp_overlap 1469988, overlap 1469987 GGGTTTTAGGGTAAA GACTTT TTT AAAGTC CTTTTTTTGTAAGAC HPP12_1388 1468918 - 1470027 + | lipopolysaccharide 1,2-glucosyltransferase HPP12_1389 1471000 - 1470038 - | type II R-M system restriction endonuclease TERM 1327 1470448 - 1470463 + g 72 -4.7 -4.78157 | TCCCTCGACCAAGAT GCATG CCTAAC CATGC TTTATTGTTTTTAAT TERM 1328 1470714 - 1470746 + g 70 -9.3 -3.2404 | opp_overlap 1470725, overlap 1470716 1470720 TTTTTCCCTTCATAC TCGCAATAAAATCCC TTT GAGATTTTATTGCTA TTACTAGATATTTCT TERM 1329 1470716 - 1470744 + g 83 -11.9 -3.17608 | opp_overlap 1470725, overlap 1470714 1470720 TTTCCCTTCATACTC GCAATAAAATCCC TTT GAGATTTTATTGC TATTACTAGATATTT HPP12_1390 1471751 - 1470981 - | type II R-M system restriction endonuclease TERM 1330 1471334 - 1471321 - G 74 -3.9 -5.08824 | GTTTGAGTTAAAAAA TTAGA ACCT TCTAA AAATAAAATGTAAGG TERM 1331 1471808 - 1471824 + r 82 -4.5 -5.4477 | overlap 1471807 CTTTATGCTGTTTGC TTAATCT TTG AGATTGA TTTTTTTAGCCATTT murB 1472620 - 1471841 - | UDP-N-acetylenolpyruvoylglucosamine reductase TERM 1332 1472037 - 1472057 + g 91 -9.7 -4.57073 | CCCTCTAAAAGCCTG CCCGCATAA TCG TTAGGCGGG TTTTTGAAACAGCTC fliQ 1472890 - 1472624 - | flagellar biosynthetic protein fliI 1474205 - 1472901 - | flagellar protein export ATPase FliI virB11-4 1475120 - 1474206 - | type IV secretion system ATPase TERM 1333 1474339 - 1474327 - G 73 -7.7 -3.96216 | TCTTTATCCAAAGAA TGCGT ATA ACGCA TGCTCAAATTCAGTG TERM 1334 1474969 - 1474953 - G 72 -4.4 -4.75404 | AAACCTCAGCAAAAA CGCCTT ATCAA AAAGCG CATGCCCTCTTTTTT ileS 1477899 - 1475137 - | isoleucyl-tRNA synthetase TERM 1335 1476212 - 1476222 + g 86 -8.2 -4.88736 | AAGATCACATCGCTA GGGC TTT GCCC TTTTTCTCCATGATA TERM 1336 1477345 - 1477371 + g 76 -4.4 -5.03145 | opp_overlap 1477345 ATAACTCCAATAAAT GGGCTTGTGG CGCTCTT TCAAAAGCCC TTTTTTAGCCACTTC HPP12_1396 1478178 - 1477924 - | hypothetical protein HPP12_1397 1478280 - 1478900 + | hypothetical protein TERM 1337 1478909 - 1478920 + T 72 -5.8 -4.28018 | opp_overlap 1478909, overlap 1478919 ACCATAAAGCATGAA GCGA TCGT TCGC TTTTCGTAAGCTCTT TERM 1338 1478951 - 1478979 + T 72 -4.7 -4.65078 | opp_overlap 1478950 1478960, overlap 1478953 TATGTATGATTAGAT TGTAAAAAACGCT TTA AGCATTTTTTAGA TTTTATTACCCCTAT TERM 1339 1478970 - 1478960 - T 71 -3.2 -5.07567 | opp_overlap 1478953 1478951, overlap 1478950 TTAGATTGTAAAAAA CGCT TTA AGCA TTTTTTAGATTTTAT HPP12_1398 1479917 - 1479129 - | hypothetical protein TERM 1340 1480192 - 1480160 - R 78 -7 -4.35926 | ATTTTAAAGTCAAAA GCCAGAGACAACCC TAGTC AAGTTGCCCCTAGC CACACCGATATTACT HPP12_1399 1480375 - 1480154 - | hypothetical protein TERM 1341 1480413 - 1480432 + r 72 -5 -4.78237 | opp_overlap 1480408 1480413, overlap 1480408 1480415 1480431 GATTAAAAATTTAAA TTCTAGCT CACT GGCTAGGA TTTTATTCTACAATA HPP12_1400 1481635 - 1480562 - | radical SAM domain-containing enzyme TERM 1342 1480765 - 1480783 + g 72 -3.2 -5.0133 | overlap 1480767 CTTTGGATTTAATGC CGTTTAAA AGT TTTAAAAG TTTTTTAGCGCAATC HPP12_1401 1482621 - 1481632 - | polysialic acid capsule expression protein HPP12_1402 1484680 - 1482605 - | ATP/GTP binding protein TERM 1343 1482819 - 1482841 + g 72 -3.4 -5.05606 | opp_overlap 1482802 1482822, overlap 1482822 1482824 CCTAAACTAGAAAAT TGAGAGCTTT CTA AAAGCGCTTG TTTGTTTTTATTCAC TERM 1344 1482822 - 1482838 + g 71 -5.1 -4.5815 | opp_overlap 1482802 1482822, overlap 1482819 1482824 AAACTAGAAAATTGA GAGCTTT CTA AAAGCGC TTGTTTGTTTTTATT TERM 1345 1484493 - 1484503 + g 80 -4.6 -5.31275 | TTTGGTTTTTTGTTG GGGC GAT GCTC TTTTTTATGGTGCGA TERM 1346 1484516 - 1484546 + g 83 -3.2 -5.54264 | overlap 1484511 CTCTTTTTTATGGTG CGAAGACGCTTCAT GGT GTGAAGACTCTCCG TTTTTTTGCATGTTT ksgA 1485533 - 1484718 - | 16S rRNA (adenosine-n6,n6)-dimethyltransferase TERM 1347 1484825 - 1484845 + g 82 -4 -5.48303 | opp_overlap 1484825 CTAACACCTTATCAA GCTTTTCT CTATA AGAAACGC TTTTTTTAAGATTGT TERM 1348 1485080 - 1485068 - G 70 -3.3 -4.97158 | opp_overlap 1485068 GCACATCAAACAAAA GGGTA GCG TTCCC TATCGTGTGCACTAA HPP12_1404 1485796 - 1486032 + | histidine and glutamine-rich metal binding protein HPP12_1405 1485806 - 1486078 + | hypothetical protein HPP12_1406 1486320 - 1486451 + | hypothetical protein TERM 1349 1486467 - 1486490 + T 95 -11.8 -3.9941 | TTTTCTAAGAGCGTT CCCTTAAGCT TTTA AGCTTAGGGG TTTCCTTGTGAAGCG HPP12_1407 1487452 - 1486667 - | hypothetical protein TERM 1350 1486995 - 1486982 - G 73 -5.9 -4.56597 | TTTGTCGTTTAAAAA GAGGC TATC GCCCC CCTCTTTTATCCCGC HPP12_1408 1489119 - 1487452 - | hypothetical protein purU 1490001 - 1489120 - | formyltetrahydrofolate hydrolase sppA 1490882 - 1490004 - | signal peptide protease IV TERM 1351 1490081 - 1490092 + g 72 -3.6 -5.00884 | opp_overlap 1490081 CTTTTTCAATGAAAC GCTC CATA GGGC TTTTTTCCAGCCAAT TERM 1352 1490644 - 1490659 + g 75 -5.4 -4.75063 | opp_overlap 1490644 ATCAAAAGTAAAACG CCCTTA ATGC TAGGGG TTTTTAAGATTTTAT TERM 1353 1490744 - 1490758 + g 76 -7 -4.42806 | overlap 1490746 TAGCGAGATTGGGTG GGGCGC TTG GCGCGC TTTCTTTGGCGCTAA HPP12_1411 1490953 - 1491225 + | hypothetical protein TERM 1354 1491273 - 1491295 + F 74 -2.1 -5.42259 | gap 1, overlap 1491275 1491276 ATTGTAAATTTATAC GCTCTTTTTG TTTG TAAAAAG-GC TTTTTTTAGCGGTGG HPP12_1412 1491430 - 1491636 + | hypothetical protein TERM 1355 1491932 - 1491899 - g 75 -2.5 -5.20216 | TATATGATCAAAAAA TGCCCCTATTTCGTA TTTT TACAAAGTAAGAACA GCGTTTCCAATCAAG HPP12_1413 1491623 - 1492150 + | hypothetical protein HPP12_1414 1492159 - 1492494 + | hypothetical protein HPP12_1415 1492527 - 1492652 + | hypothetical protein HPP12_1416 1492663 - 1492809 + | hypothetical protein HPP12_1417 1492790 - 1493122 + | hypothetical protein TERM 1356 1493219 - 1493229 + T 76 -6.8 -4.50058 | opp_overlap 1493219 ATCCATTCCCATAAA CCTG ATA CAGG TTTTCCTTATACCTA TERM 1357 1494395 - 1494420 + T 93 -9.2 -4.52589 | AGGTAATACTCTTTG GCTTTTAACA AGCGAA TGTTAAAAGC TTTTCTCTAGAAAGG TERM 1358 1494464 - 1494447 - T 74 -9.1 -3.07291 | opp_overlap 1494447, overlap 1494437 1494434 AAGGAGGTGATCCAA CCGCAGG TTCA CCTACGG TTACCTTGTTACGAC TERM 1359 1495970 - 1495993 + T 95 -12.6 -3.63627 | TTTGTTTTTTGATAG GCTGTTGTTA TTCC TAACAACAGC TTTAGCGTATCACAA HPP12_1418 1497060 - 1496425 - | hypothetical protein ppiA 1497329 - 1497817 + | peptidyl-prolyl cis-trans isomerase B csrA 1497836 - 1498066 + | carbon storage regulator TERM 1360 1498482 - 1498497 + G 76 -3.2 -5.21709 | overlap 1498484 CTATGGGATCTTTAG TGGGTG CGGA CACCAA TTTTTTCATCTCGCA HPP12_1421 1498067 - 1498870 + | 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase HPP12_1422 1498867 - 1499325 + | ssra-binding protein exbB-3 1499328 - 1499780 + | biopolymer transport protein ExbB exbD-3 1499791 - 1500192 + | biopolymer transport protein ExbD TERM 1361 1500828 - 1500814 - g 74 -4.2 -5.03747 | AAAGGCTTGAAAAAA GGAATG ACT CATACC TATGCGAAACAATAA rnpA 1500358 - 1500843 + | ribonuclease P protein component HPP12_1426 1500830 - 1501186 + | hypothetical protein TERM 1362 1502540 - 1502573 + G 93 -9.8 -5.08255 | overlap 1502533 GCTCAGAGTGGATCT TATGGATTCATGAT TTATCC ATCATGGATCCGTA TTTTATTTTACCGCT TERM 1363 1502811 - 1502800 - g 93 -5.8 -5.60689 | TTAGAGAATAAAAAA CGCA TGCA TGCG CAAAACAAAAAGGAA yidC 1501192 - 1502832 + | inner membrane protein translocase component TERM 1364 1502943 - 1502954 + GF 74 -5.8 -4.62872 | opp_overlap 1502942 GAAGTCATTCAAACG CCCT CTAA AGGG TTTTTAAGCATTGGT TERM 1365 1503468 - 1503451 - gf 71 -7.7 -3.5764 | AAGCGCAGCTCCAAA GCACGAT CATG ACCGTGC ATGAAGTGGGTAAGG HPP12_1428 1502832 - 1503626 + | VirB11-interacting protein thdF 1503586 - 1504971 + | thiophene/furan oxidation protein TERM 1366 1505284 - 1505261 - g 79 -5.2 -5.02231 | opp_overlap 1505261 1505279, overlap 1505263 1505279 1505280 CAAAAACACCAAAAA GACGGCTTTT TCAT AGAAGCCGGC TTTGAAACCGGGCTA homD 1505177 - 1507417 + | outer membrane protein HomD HPP12_1431 1507625 - 1507434 - | hypothetical protein TERM 1367 1507735 - 1507748 + r 77 -5.3 -5.0133 | overlap 1507718 TGGGGGTTTGAAAGC CCAAA GTCA TTTGG TTTTTTCAAACAATC TERM 1368 1507788 - 1507809 + r 75 -10.1 -2.50113 | opp_overlap 1507788, overlap 1507787 TAGGCTCGTGAAGCA CCCAAACGC TAAA GCGATTGGG CTTCCTAGGCTGATG TERM 1369 1507809 - 1507788 - R 75 -10.1 -2.71144 | opp_overlap 1507787 1507788 TAGGCTCGTGAAGCA CCCAAACGC TAAA GCGATTGGG CTTCCTAGGCTGATG TERM 1370 1508017 - 1508031 + r 70 -2.2 -5.28166 | overlap 1508018 TCTGCTTGGGTGGTT TTAAAA AGA TTTTAG TTTTTGTTAATTTTA TERM 1371 1508236 - 1508219 - R 76 -6.3 -4.46976 | opp_overlap 1508219 ATGAATAAACATAAA GCAAGAT TAAT ACCTTGC TTATAGCCCCGTATT HPP12_1432 1509148 - 1508237 - | hypothetical protein TERM 1372 1508434 - 1508444 + g 74 -4 -5.01811 | CATTAGCACTGTCTG TGAA AAC TTCA TTTTTGATTTGATAG TERM 1373 1509027 - 1509053 + g 77 -5.1 -4.92812 | opp_overlap 1509027, overlap 1509029 GAAGTGGCTGAACCA CTCCCATAAAG ATAGC CTTTTTGGGTG TTTGTTTTGTTGTAG HPP12_1433 1509499 - 1509158 - | hypothetical protein HPP12_1434 1510034 - 1509507 - | membrane-associated lipoprotein TERM 1374 1509685 - 1509706 + g 87 -5.2 -5.46698 | gap 1 CTTATGGACCTTTTA CCAGAAGCG TCTAC CG-TTCTGG TTTTTTCATTTTCCA HPP12_1435 1510690 - 1510058 - | hypothetical protein TERM 1375 1510997 - 1510977 - R 80 -11.1 -2.53995 | AGCTATTTGAAGTTA GCCCCCTAT CAA AAAGGGGGC TAAAAAAAGGGACTA TERM 1376 1511059 - 1511038 - R 93 -4.5 -5.99154 | opp_overlap 1511035 1511038 1511058 GACTAAATAAAAAAA GAGTTAAAA GATT TTTAAACTC TTATTTTTACAATAA HPP12_1436 1511420 - 1511106 - | thioredoxin TERM 1377 1511366 - 1511380 + g 91 -7.8 -5.28778 | CTACATTGACCACTA CCGCTT GAT GAGCGG TTTTTTCTGCGTAAT HPP12_1437 1512263 - 1511475 - | ribosomal large subunit pseudouridine synthase B dnaE 1515880 - 1512245 - | DNA polymerase III alpha-subunit TERM 1378 1513021 - 1513009 - G 79 -6.9 -4.57569 | opp_overlap 1513009 CCATGGCTCCAAAAA GGGAG TTG CCCCC TTGCATCATTTCATT TERM 1379 1515683 - 1515700 + g 73 -2 -5.19212 | gap 1, overlap 1515677 CGCTTCCATGCCGAT GATAGGC TTAAT GCCT-TC TTTTTTCATGCTCGT HPP12_1439 1516028 - 1517080 + | cytochrome C551 peroxidase HPP12_1440 1517846 - 1517259 - | secreted motility protein HPP12_1441 1518540 - 1517863 - | hypothetical protein TERM 1380 1518155 - 1518145 - G 79 -5.4 -4.89567 | TTCTAAAAGAGAAAA CGAT AAA ATCG TAAAACGGACCGCAT HPP12_1442 1519358 - 1518543 - | ABC transporter substrate binding protein HPP12_1443 1520128 - 1519343 - | ABC transporter ATP-binding protein HPP12_1444 1521261 - 1520128 - | ABC transporter permease protein TERM 1381 1521381 - 1521410 + H 95 -6.1 -6.38655 | gap 1, opp_overlap 1521380, overlap 1521400 TGTTTAATAAAGGAT TGATTATTTTTAAA ATG TTTAAAAA-AATCA TTTTTTTTTGTGTTT HPP12_1445 1521395 - 1522090 + | outer membrane protein ilvE 1523117 - 1522095 - | branched-chain amino acid aminotransferase IlvE TERM 1382 1522772 - 1522747 - G 70 -5.4 -4.32857 | opp_overlap 1522750 1522768, overlap 1522732 1522733 1522768 GGGCGCAAATACAAA CTCGCCCC GCTTTTATAA GGAGCGAG CCATTTTTGATTCGC TERM 1383 1523176 - 1523162 - R 70 -4.2 -4.66609 | GATTGTATCTAAAAA GGGGTT AAA AATCCC TCAAGTAACTGATCT horJ 1523912 - 1523166 - | outer membrane protein HorJ TERM 1384 1524038 - 1524027 - R 74 -3 -5.29385 | opp_overlap 1524027 AACTCAATTAAAAAA CTAA CCTT TTAG TTCATTCCAACGATT polA 1526738 - 1524027 - | DNA polymerase I TERM 1385 1524997 - 1525010 + g 74 -5.3 -4.7254 | GAATGGCTTTTATTT TTAGG AAGC CCTAA TTTTTCATACAAAAT TERM 1386 1525559 - 1525543 - G 71 -3.7 -4.87273 | overlap 1525532 1525545 AACATTTGAGAAAAA GCGTTTT CTA AAAACTC TAAAGAAAAGGGCGA TERM 1387 1525689 - 1525676 - G 70 -3.1 -4.87786 | opp_overlap 1525677, overlap 1525677 CCAAGCGCATAAAAA CCCTA GCGT TAGGA TTTTTTAATTTTTCT TERM 1388 1526032 - 1526050 + g 83 -9 -4.11692 | GCGCTTGCTTTGTCG TGTATCAA GGC TTGATACA TTTTAGGGCTGAGTA TERM 1389 1526295 - 1526279 - G 80 -6.5 -4.72272 | overlap 1526281 TTTTGCCATCAAAAA GCGCGAT TTT ATCGCTC AAAAGCTGGTTAAAA TERM 1390 1526622 - 1526649 + g 73 -5.6 -4.60487 | opp_overlap 1526625, overlap 1526625 TAAAAGCCCTGTAGG AAAGCCCTTAAC ATTC GTTAAAGGCTTA TTTTTAGCGCTCATG TERM 1391 1526646 - 1526625 - G 79 -9.5 -3.73072 | opp_overlap 1526622 1526625 AAGCCCTGTAGGAAA GCCCTTAAC ATTC GTTAAAGGC TTATTTTTAGCGCTC TERM 1392 1526625 - 1526646 + g 78 -7.3 -4.41633 | opp_overlap 1526625, overlap 1526622 AAGCCCTGTAGGAAA GCCCTTAAC ATTC GTTAAAGGC TTATTTTTAGCGCTC HPP12_1449 1528045 - 1526804 - | type IIS R-M system restriction enzyme HPP12_1450 1530078 - 1528042 - | type IIS R-M system methyltransferase TERM 1393 1529134 - 1529145 + g 75 -5.8 -4.66418 | opp_overlap 1529126 CTTCAAACGGCTTTC GCCA TTAA TGGC TTTGTTGTTGTTTTC HPP12_1451 1530687 - 1530112 - | amidophosphoribosyltransferase tmk 1531250 - 1530675 - | thymidylate kinase HPP12_1453 1531725 - 1531252 - | lipopolysaccharide core biosynthesis protein ubiD 1532288 - 1531725 - | aromatic acid decarboxylase flgA 1532954 - 1532298 - | flagella basal body P-ring formation protein FlgA HPP12_1456 1534996 - 1532951 - | DNA helicase II TERM 1394 1534409 - 1534429 + g 79 -5.4 -4.99056 | AATGTAATAGTAGTG CTCGCTAG TCTCT TTGGCGAG TTTTTCATTATCTTG HPP12_1457 1537530 - 1534996 - | hypothetical protein TERM 1395 1536085 - 1536069 - G 73 -2.2 -5.25976 | opp_overlap 1536069 1536071, overlap 1536056 1536071 AATCAAAAAAAGAAA GGGCTT TTTTT AAGCGC TTGTTTTCTAAGGCT TERM 1396 1536895 - 1536910 + g 70 -3.2 -4.86731 | opp_overlap 1536886 1536895, overlap 1536895 CACTAACGCATCAAT CGCG CTCACGCT CGCG TTTTCTTTAGAGGCG TERM 1397 1537454 - 1537466 + g 72 -3.3 -5.02421 | overlap 1537454 1537454 ATTTTAGAATGAATG CCCTT TAG GGGGG TTTCTTTTTCGTTTT serS 1538787 - 1537540 - | seryl-tRNA synthetase HPP12_1459 1539585 - 1538788 - | hypothetical protein HPP12_1460 1539840 - 1539589 - | exodeoxyribonuclease VII small subunit TERM 1398 1539786 - 1539796 + g 72 -3.2 -5.00884 | AGCTTTTTTTAGGGG CGTT TTT AGCG TTTTTTGGGGGGGCT ubiE 1540590 - 1539850 - | methyltransferase TERM 1399 1540538 - 1540556 + g 95 -6.1 -5.5604 | TAAGAGCTGGCTATA TCATCAA ACATG TTGATGA TTTTTTCTTGCTTGA HPP12_1462 1541063 - 1540617 - | integral membrane protein HPP12_1463 1541646 - 1541074 - | hypothetical protein HPP12_1464 1542763 - 1541633 - | ABC-2 type transport system permease protein TERM 1400 1542221 - 1542206 - G 81 -6.8 -4.77698 | opp_overlap 1542206 TAAGATGAAAATAAA CACGCT AGAG AGCGCG TAATTCAAATACCCC HPP12_1465 1543857 - 1542760 - | ABC-2 type transport system permease protein TERM 1401 1543542 - 1543522 - G 72 -4.7 -4.77567 | opp_overlap 1543522 AGCGTTATAATAAAA GGGCAAA TCCACCT TTCGCCC CATTTTAATTTTTTT HPP12_1466 1544858 - 1543869 - | secreted protein TERM 1402 1544176 - 1544166 - G 73 -8.2 -3.88731 | CAACACCACAGGAAA GCCC TTA GGGC TAAGCTCGCCACCGC HPP12_1467 1546402 - 1544870 - | outer membrane efflux protein TERM 1403 1546145 - 1546125 - G 79 -4.8 -5.08178 | gap 1, overlap 1546128 1546138 AGATACACATAAAAA GCACTCAAA TCAA TTTGAG-GC AAAAAAGAAAGCTTA TERM 1404 1546439 - 1546450 + r 74 -5.8 -4.46212 | CTTATTTTCTTTACT CGCT TTTA AGCG TTTTATCCTGGCCCC HPP12_1468 1547755 - 1546418 - | hemolysin domain-containing protein TERM 1405 1546967 - 1546953 - G 70 -8.6 -3.31263 | ATGTTATCCTTAGAA CCCTTA CAA TAAGGG TAGCGCGTGAAGCGG HPP12_1469 1549459 - 1547858 - | phosphate permease TERM 1406 1547914 - 1547899 - G 74 -4.6 -5.0065 | overlap 1547911 GAGCCACAAACAAAA GCGCCC CCAA AAGCGC AGAAACCGGCACGGT TERM 1407 1548944 - 1548930 - G 73 -2.1 -5.24531 | ATGCCTGATAAAAAA TGCCA ATTAA TAGCA GACATTCCAGCTGCT HPP12_1470 1549600 - 1549869 + | nifu-like protein TERM 1408 1549964 - 1549974 + G 73 -2.4 -5.26918 | AGCCCATTATGCTGA AGCG TTA CGCC TTTTTTCTGAAGTGT HPP12_1471 1549881 - 1550492 + | hypothetical protein murE 1550496 - 1551839 + | UDP-murnac-tripeptide synthetase tal 1551842 - 1552792 + | transaldolase TERM 1409 1552797 - 1552826 + F 76 -4.4 -5.07652 | overlap 1552812 AGAGTTTTTGATTTT TAAGGGTTTTTT GGATAG AATAAGCCCTTA TTTTATTTTAAAGGA rplY 1552847 - 1553383 + | 50S ribosomal protein L25 pth 1553393 - 1553953 + | peptidyl-tRNA hydrolase TERM 1410 1554295 - 1554312 + G 73 -5.5 -4.64844 | CACGGCTGTTTATGT GGGGTTG AACG CGACTCC TTTTGTGTATATGGA TERM 1411 1554801 - 1554819 + G 77 -6 -4.57837 | overlap 1554795 TTTTTGTGCCGTTTT TAAGCGTT TTA ATCGCTTA TTTTTCGCCCAGTCT HPP12_1476 1553963 - 1555030 + | hypothetical protein HPP12_1477 1555145 - 1556065 + | hypothetical protein HPP12_1478 1556142 - 1557437 + | restriction endonuclease horK 1558781 - 1557615 - | outer membrane protein HorK TERM 1412 1559235 - 1559261 + G 78 -3 -5.50723 | TTCAAAAAATACTCA TGCTTAAAGTGA TCT TAGCGTTAAGCA TTTTTCTTTTGGTGC HPP12_1480 1558961 - 1559398 + | hypothetical protein fixI 1561746 - 1559395 - | cation transporting P-type ATPase TERM 1413 1559567 - 1559580 + g 81 -6.7 -4.83169 | TGATAGACTTTTTGA GCGTT ATCA AACGC TTTTTCTAACAAACT TERM 1414 1559627 - 1559645 + g 90 -8.9 -5.0133 | AGCAAAATATCGCAT GCGCTTT TACTC AAAGCGC TTTTTTCAAACCCTA TERM 1415 1561001 - 1560991 - G 72 -4.6 -4.70117 | AACGGAATAAACAAA CGCC GAT AGCG CTCCAAAAGACACGC TERM 1416 1561256 - 1561266 + g 81 -6.8 -4.7416 | opp_overlap 1561256 1561255, overlap 1561263 AAAGTGAGCAAATAG GAGC GCT GCTC TTTTTGGGCTTTTAG TERM 1417 1561387 - 1561410 + g 76 -4.6 -5.01732 | gap 1, opp_overlap 1561372 CACGATTTGTAAATG GTGGGTGGTGA AAT TCA-CGCTCAC TTTTTTAACCCCCTT HPP12_1482 1562487 - 1561771 - | hypothetical protein HPP12_1483 1563503 - 1562469 - | riboflavin biosynthesis protein TERM 1418 1562891 - 1562905 + g 74 -4.2 -5.02074 | TTGCTCGCTGGTTGT GCGTGA AAA TAACGC TTTTTTGCCCGGTGA TERM 1419 1563334 - 1563362 + g 83 -5.3 -5.33866 | AGTGCTGATTTAGCG GCCAAGACTTC TGCATGC GGGGTTTTGGC TTTTTTGTGGGTTTC gltS 1564726 - 1563500 - | sodium/glutamate symport carrier protein HPP12_1485 1564812 - 1566011 + | saccharopine dehydrogenase HPP12_1486 1567397 - 1566021 - | ferredoxin-like protein TERM 1420 1566897 - 1566871 - Gf 77 -5.3 -4.92239 | opp_overlap 1566872, overlap 1566872 CTAAAAAGCCAAAAA CCCATAGC-AACA GGA TGTTCGCTA-GGG TTTTTAAGATACATA TERM 1421 1566872 - 1566897 + gF 73 -5.5 -4.62783 | gap 1, opp_overlap 1566871 1566872 TAAAAAGCCAAAAAC CCATAGC-AACA GGA TGTTCGCTAGGG TTTTTAAGATACATA TERM 1422 1567913 - 1567934 + GH 76 -3.6 -5.28176 | CATCCCTATTGAAAG CCTCATCG GTTTAA CGGTGTGG TTTTTTGTGGGTAAG TERM 1423 1567985 - 1568009 + GH 85 -5.7 -5.3236 | CGCTAGCATTCTAGG GGTAGGCACAG CGA CTGTTCTTATC TTTTTTGTGCCTTAT HPP12_1487 1567377 - 1568165 + | integral membrane protein TERM 1424 1568250 - 1568211 - g 71 -9.4 -2.90496 | TGGTGTTTGAAACGA TTTTGGGGATTTTAGAGT TTGA ACGCTTAAAACCCCAAAA AATAAGCGTGGATTT folB 1568162 - 1568515 + | dihydroneopterin aldolase HPP12_1489 1568499 - 1568825 + | frpb-like protein frpB-4 1568979 - 1571612 + | iron-regulated outer membrane protein TERM 1425 1571620 - 1571635 + F 88 -6.2 -5.61824 | opp_overlap 1571620 AGTTCTAAAATGAAA GAAATC TTAG GATTTC TTTTTTTGAATTTTA TERM 1426 1572608 - 1572580 - g 73 -2.4 -5.32699 | opp_overlap 1572600 TGAAACATTAAAAAA CCACCCCC TTTATAGAGCTTT GAGGGTGG ATAAAATCACGCTCA TERM 1427 1572976 - 1572962 - g 79 -5.8 -4.86621 | AGCCTGAATGAAAAA GATTTT GAA AAAATC GCTCTGGTTTTAGAA selA 1571840 - 1573012 + | selenocysteine synthase nusA 1573109 - 1574296 + | transcription termination factor A HPP12_1493 1574353 - 1574847 + | hypothetical protein TERM 1428 1575476 - 1575490 + T 73 -7.1 -4.07246 | TTAAGCCAAAGGTTT CCCCT ATTTA AGGGG TTTCCTTTAAGGTGA TERM 1429 1575798 - 1575773 - T 79 -8.3 -3.92577 | gap 1, opp_overlap 1575771 1575775, overlap 1575771 TAATTCTTAAAAAGA GTTG-CCCCCTA AAT TAGGGGGTCATC CTTAAGTGGAAAATC TERM 1430 1575775 - 1575796 + T 72 -9.5 -2.75064 | gap 1, opp_overlap 1575773 1575771, overlap 1575771 ATTCTTAAAAAGAGT TG-CCCCCTA AAT TAGGGGGTCA TCCTTAAGTGGAAAA HPP12_1494 1579728 - 1575820 - | type IIS R-M system restriction/modification enzyme TERM 1431 1576232 - 1576216 - G 71 -3.7 -4.9138 | ATTATCTAAATAAAA TCGTG GCTCTTG CACGA TCTCGCTATACACAA TERM 1432 1576750 - 1576735 - G 85 -7.6 -4.85782 | opp_overlap 1576734 GTTGGCAAAAATAAA GCTTTC TGTT GAAAGC GCGTTTTGTTTCATG TERM 1433 1576830 - 1576847 + g 79 -6.9 -4.49958 | CGTAATATTTAAAGC CGCTCTC TTTA GGGGGCG TTTGTTTGATGAAAT TERM 1434 1577462 - 1577478 + g 74 -5.3 -4.70739 | overlap 1577464 AGTTCTAAATGCTCT TTTAAAA ATT TTTTAAA TTTTAATTCTTTTTG TERM 1435 1578854 - 1578840 - G 88 -8.6 -4.72863 | TGAAAGAAATTAAAA GGCTTT CTA AAAGCC GTAAAAACAAGATGC TERM 1436 1579409 - 1579395 - G 70 -2.8 -5.06052 | opp_overlap 1579395, overlap 1579390 CTAAAAAATACAAAA CCATTT GAC AAAAGG CTTTACTGAGCGGGT HPP12_1495 1582023 - 1580020 - | hypothetical protein TERM 1437 1581311 - 1581339 + g 72 -3.3 -5.06451 | opp_overlap 1581294 TTCAAACTATGGTTA GCTTTAAAAAA CCTGTTA TTTTCTAAAGC TTTTTTAAGATCATC TERM 1438 1581411 - 1581399 - G 77 -6.3 -4.61231 | CCATATGTTTAAAAA TCTCA GAT TGAGA CAATAATTCTTGATA TERM 1439 1581572 - 1581599 + g 70 -3.6 -4.92756 | TTATCTAAAATTTCA TAAAAACTTTTA TTTT TAATGGTTTTTA TTTCTTTTTCATAAT TERM 1440 1581648 - 1581658 + g 93 -5.4 -5.57888 | CTTTAAGACTTTCTA GAAG CAC CTTC TTTTCTTTTTTTAAT res-4 1585066 - 1582157 - | type III R-M system restriction enzyme TERM 1441 1584929 - 1584919 - G 73 -5.4 -4.63932 | TATTTTCTAATAAAA GATC TTT GATC GCTTCTATTTCAAAA mod-5 1587111 - 1585069 - | type III R-M system methyltransferase TERM 1442 1586215 - 1586245 + g 73 -7.9 -3.80862 | gap 1, overlap 1586198 TAAAAAATCTAGCGT TTTAGGATTATAGT AAAT ACTATAA-CCTAAA TTTGCTCGTGCGTTT recG 1589031 - 1587160 - | ATP-dependent DNA helicase RecG TERM 1443 1587725 - 1587743 + g 79 -5.3 -5.09895 | ATGACTTGATGGTTT TTAGCGA TTTCT TCGCTGA TTTTTTCCATCACTA TERM 1444 1588734 - 1588724 - G 73 -6.8 -4.2679 | opp_overlap 1588724 TAAGCTTGATTAAAA GAGC TTT GCTC TAATTTACCATAAAT TERM 1445 1589354 - 1589342 - g 83 -4.9 -5.19998 | ATAACGAAAATAAAA TTGAT GAA ATCAA TAATGAAGAAAACAC HPP12_1499 1589113 - 1589460 + | hypothetical protein TERM 1446 1590049 - 1590061 + G 93 -7.7 -5.51046 | TTTGAATACGACTCA GCCTT TGT AAGGC TTTTTTCTGTCTTTA HPP12_1500 1589464 - 1590099 + | hypothetical protein exoA 1590848 - 1590096 - | exodeoxyribonuclease TERM 1447 1590421 - 1590437 + g 76 -2.1 -5.50499 | GCCACGTTCAAATCC CCGCACA CAA TGACCGG TTTTTTTAACTCTAA HPP12_1502 1592458 - 1591028 - | periplasmic competence protein comh TERM 1448 1591599 - 1591617 + g 72 -3.1 -5.08255 | overlap 1591601 GAAATTTTAGTATAG GGGGTAA TGATT TTACCGC TTTTATTTTCAGCGT dnaA 1594054 - 1592687 - | chromosomal replication initiator protein TERM 1449 1592912 - 1592927 + g 79 -3.2 -5.40072 | opp_overlap 1592922, overlap 1592914 ATACACGACTAATTT TCTCGC CAAA GCGACA TTTTTTTGGCGCGAA TERM 1450 1593075 - 1593121 + g 75 -9.5 -3.27704 | gap 1, opp_overlap 1593074, overlap 1593091 AGGTTCAAATCAATC GGAGCGTTCATTAAGTTC-GCG TTCA CGCTGATTTTAATGATCGCGCC TTCCATTTGGCGGAT TERM 1451 1594596 - 1594617 + G 74 -4.5 -4.87133 | gap 1 CATGGAGTTTTTTAG CGTTTTAAGC GTG GCT-AAAGCG TTTTCTTTGAAGGCT HPP12_1504 1594207 - 1594749 + | purine nucleoside phosphorylase HPP12_1505 1594792 - 1595031 + | hypothetical protein TERM 1452 1595446 - 1595435 - g 70 -5.8 -4.35885 | ATTTATTAGAAGAAA CGCT TAAA AGCG AGGGCGATTTATTGA TERM 1453 1595983 - 1596008 + G 79 -8.4 -4.07568 | gap 1 AGAGCGAGAGCCATT TTAGCG-AGCG AATAC CGCTACGCTAA TTTTAAAAGCAACCC TERM 1454 1596065 - 1596053 - g 74 -9.1 -3.55761 | TAGCGATTTCTCAAA GCGGT GAA ACCGC TGACACTTTGGAGGC glmS 1595032 - 1596825 + | fructose-6-phosphate amidotransferase HPP12_1507 1596847 - 1597479 + | thymidylate synthase TERM 1455 1597734 - 1597757 + T 93 -9.6 -4.13995 | TTTTCTAAGAGCGTT CCCCTGAGTT TAAA AGCTTAGGGG TTTCCTTTATAAGCG TERM 1456 1598047 - 1598070 + T 93 -9.6 -4.19735 | GTATTAGCCAAAGTT CCCCTGAGTT GAAA AGCTTAGGGG TTTCCTTTTCAAGCG hsdS-4 1599339 - 1598131 - | type I R-M system S protein hsdM-3 1601786 - 1599336 - | type I R-M system M protein TERM 1457 1600126 - 1600138 + g 75 -5.5 -4.74103 | overlap 1600137 ACTTTTTGACAAACG CTCTC TAT GAGGG TTTTTGGGTTAAAAC TERM 1458 1601296 - 1601285 - G 75 -5.8 -4.81863 | AAAGGGATAATAAAA GCGA AACT TCGC TAGGGGTGTAAAACT TERM 1459 1603982 - 1603968 - H 71 -8.6 -3.13109 | overlap 1603967 GAGATCAGTTAAAAT CGCTTT GTG AAAGCG TGAAAGAGCCAAAAG TERM 1460 1604758 - 1604740 - H 95 -3.2 -6.20267 | overlap 1604741 TCAAAAAGAAAAAAA CCTTAAAA TCG CTTTAAGA AAAATCATAAACGAT TERM 1461 1604962 - 1604978 + G 77 -8.7 -3.90291 | opp_overlap 1604961 1604958 CTAGCTTTAAACGAT GAGAGCC TCA GGCTTTC TTTGATTAAAAGACT HPP12_1511 1604830 - 1605537 + | hypothetical protein rocF 1609472 - 1608504 - | arginase TERM 1462 1609071 - 1609056 - G 70 -9 -3.13109 | overlap 1609055 GACACGATTTAAAAC CATGCC TAAA GGCATG CCGTGGATGTGCTTT ald 1609676 - 1610818 + | alanine dehydrogenase HPP12_1515 1610933 - 1611604 + | hypothetical protein HPP12_1516 1611582 - 1612331 + | hypothetical protein HPP12_1517 1612482 - 1612661 + | hypothetical protein horL 1613400 - 1612672 - | outer membrane protein HorL TERM 1463 1613228 - 1613206 - G 76 -3.4 -5.27335 | overlap 1613207 1613221 TTTCCCAAAGAAAAA CTGATACCCT AAA AGCGCATCAA ACCCCTTGATGGTAG HPP12_1519 1613587 - 1614441 + | inorganic polyphosphate/ATP-NAD kinase recN 1614458 - 1616032 + | DNA repair protein RecN TERM 1464 1616844 - 1616830 - g 79 -3.6 -5.5112 | TTTATCAATAAAAAA TTCACT CTC AGTAAA AAAAAGAAACAAAAA TERM 1465 1616871 - 1616854 - g 89 -5.7 -5.36018 | opp_overlap 1616854 1616852 AGTAAAAAAAAGAAA CAAAAAT CGCA ATTTTTG TATTTAGAAGAAGAG TERM 1466 1617010 - 1616998 - g 73 -6.9 -4.21408 | AATTCTAAAATCAAA CGCCC GAT GAGCG GGTATGAAGTGCTGT HPP12_1521 1616029 - 1617336 + | fibronectin/fibrinogen-binding protein HPP12_1522 1617355 - 1617651 + | hypothetical protein TERM 1467 1617701 - 1617731 + T 76 -7.8 -4.06866 | TTTTTTTAATTTGGT TTAAGTAGAACTTG ATG TAGGTTTTACTTAA TTATTATATTTATAC TERM 1468 1617800 - 1617782 - T 82 -7.6 -4.59489 | opp_overlap 1617782 1617784 AATTTAAACAATAAA CATAAAAA TAT TTTTTATG TTGACTCACTATTAT HPP12_1523 1618852 - 1617938 - | type II R-M system methyltransferase TERM 1469 1618799 - 1618782 - G 71 -7.1 -3.93262 | TTTAATAAATCCAAA CAAAATC GCGC GATTTTG GGGTGGGTGTAAAAA HPP12_1524 1619068 - 1618865 - | hypothetical protein fbp 1619940 - 1619068 - | fructose-1,6-bisphosphatase TERM 1470 1620298 - 1620284 - gH 88 -7.8 -5.1417 | GCAGAAAATGAAAAA CACCCC CAC AGGGTG TTGCAACTCATTAAA rpe 1620011 - 1620664 + | D-ribulose-5-phosphate-3-epimerase TERM 1471 1620842 - 1620855 + GT 79 -3.1 -5.46129 | AAACCTTAAAACCCC CCTTA AAGA TGAGG TTTTTTCCTTTATTG TERM 1472 1621354 - 1621374 + GT 70 -6.9 -3.81256 | ACTTGCCTAGCTACA TCAAAACCA CAA TGGATTTGA TTGATTTTTCCAAAT HPP12_1527 1620534 - 1621505 + | DNA polymerase III epsilon subunit HPP12_1528 1622248 - 1621688 - | hypothetical protein TERM 1473 1621741 - 1621765 + g 79 -8.7 -4.06904 | AATTAGTGGCATTCA TCCCAAACA CTAAAGA TGTTTGGGA TTTCTGCTTGGGTGG HPP12_1529 1623558 - 1622491 - | translation elongation factor Ef-TS TERM 1474 1623412 - 1623426 + g 73 -5.7 -4.56597 | ATCGGCCTTTTTAGC GGCTT TACTC AAGCC TTTTTCGCGCAAGAA TERM 1475 1623467 - 1623483 + g 70 -3 -5.05782 | gap 1 TTTTGCAAATCCCCA GCCACTT CCAC AAG-GGC TTTTTTGCAATCCAT TERM 1476 1623513 - 1623525 + g 79 -4.9 -5.12617 | TCATGCCCGCATCGG TTAAG TCC CTTAA TTTTTTAACTAATTG rpsB 1624352 - 1623558 - | 30S ribosomal protein S2 TERM 1477 1624261 - 1624279 + g 71 -6.1 -4.19238 | ATATTTTTCCTAACG CCAAAAA TGAAT TTTTTGG TTTTAGGGTTCCAAC TERM 1478 1625212 - 1625175 - g 74 -4.3 -5.00616 | gap 1 GCGTTTTTTAAAAAA CAAGCTCTAT-TTATTTG ATC CCAATAAGAAAGAGCCTG CATTTGATGAAGAGG TERM 1479 1626482 - 1626472 - g 71 -4 -4.83615 | GATTTTTTAGAAAAA TTAG AGG CTAA AGCGATCGCTTCTTT TERM 1480 1627210 - 1627220 + G 76 -2.4 -5.4505 | opp_overlap 1627210 AATCATGCCTTAAAG GGCG AAG CGGC TTTTTTATTCCAAGG pcrA 1624603 - 1627443 + | ATP-dependent nuclease subunit A TERM 1481 1627623 - 1627648 + G 85 -6.9 -5.16237 | gap 1, overlap 1627624 TTTGCGCTATGGCAC ACCCCT-TTTGG GTT CCAAATAGGGGA TTTTTTCATCGGCTT TERM 1482 1627624 - 1627647 + G 80 -10.4 -3.68658 | gap 1, overlap 1627623 TTGCGCTATGGCACA CCCCT-TTTGG GTT CCAAATAGGGG ATTTTTTCATCGGCT nhaA 1627467 - 1628783 + | na+/h+ antiporter yajC 1628831 - 1629214 + | preprotein translocase YajC subunit TERM 1483 1630282 - 1630296 + G 75 -5.6 -4.73614 | AAAACTTCCATTATT GCTCTC ATT GGGGGC TTTATTTTAGTGATG secD 1629211 - 1630788 + | protein-export membrane protein SecD TERM 1484 1631402 - 1631418 + G 81 -6.7 -4.7373 | opp_overlap 1631405 GATCGGGTATTCCAT TAATGAT ACG ATCATTA TTTTTGATCGGATCA secF 1630797 - 1631768 + | protein-export membrane protein SecF TERM 1485 1631940 - 1631956 + G 70 -8 -3.66646 | AAGCGTTTCGCTTCA GAGCTG TTGGC CAGCTC TTTAGCTACCGTGTT TERM 1486 1632045 - 1632061 + G 73 -8 -3.83768 | overlap 1632059 ATGCTCATGATCGGG GCGTTG ATTAG CAACGC TTTCAGTCTTATTTT HPP12_1536 1631778 - 1632116 + | integral membrane protein leuS 1632126 - 1634546 + | leucyl-tRNA synthetase HPP12_1538 1634543 - 1635055 + | hypothetical protein TERM 1487 1635346 - 1635331 - g 76 -7.6 -4.15044 | CTGTTGTTGAAGAAA GCGTTT TAGA AAACGC CCACCAGCAATTGCA TERM 1488 1635789 - 1635777 - g 75 -7.7 -4.08692 | opp_overlap 1635777, overlap 1635788 GAAGTGGCTCTAAAA GCGTT TGA AACGC TTTTGCCATGCAATA TERM 1489 1635777 - 1635789 + G 77 -7.7 -4.14243 | opp_overlap 1635777 1635788 GAAGTGGCTCTAAAA GCGTT TGA AACGC TTTTGCCATGCAATA folC 1635045 - 1636214 + | bifunctional folylpolyglutamate synthase / dihydrofolate synthase HPP12_1540 1636214 - 1637140 + | membrane-bound metallopeptidase TERM 1490 1637891 - 1637912 + GF 76 -4.5 -5.08824 | gap 1 GGATGAGCACGGGGC CGCATTTGCA TTA TG-AAGTGCG TTTTTTAGATCAGCC HPP12_1541 1637149 - 1638084 + | membrane-bound metallopeptidase HPP12_1542 1638003 - 1638413 + | hypothetical protein TERM 1491 1638876 - 1638896 + G 74 -3.9 -5.0538 | overlap 1638877 ATTTATGCGCCCAAT TCTAAAGCG TAT CGCTTGAGC TTTTTTGACATGGAG TERM 1492 1640155 - 1640144 - g 72 -4.4 -4.8236 | GAGCGAAAAAAACAA GCTT TTAA AAGC CGTAGAATTAGGGTT TERM 1493 1641344 - 1641328 - g 74 -5.1 -4.69415 | ATGAACATAAAGAAA GCTTGAA AGC CCCAAGC AAAGACGATAACGAT mfd 1638417 - 1641416 + | transcription-repair coupling factor TERM 1494 1641655 - 1641634 - g 74 -5.2 -4.7497 | gap 1, opp_overlap 1641635 1641645, overlap 1641636 GGTAGCGATGAAAAA GACTTGGGA TCCGC TCCCAAG-C GTTGTTTCAGCCGGT TERM 1495 1641654 - 1641636 - g 83 -8.9 -3.99327 | opp_overlap 1641635 1641645, overlap 1641634 TAGCGATGAAAAAGA CTTGGGA TCCGC TCCCAAG CGTTGTTTCAGCCGG TERM 1496 1641890 - 1641878 - g 76 -3.3 -5.19251 | CAAGATGAAGAAAAA GGCTT TTT ATGCC CATGCCATGGGGGGC petA 1641542 - 1642045 + | ubiquinol cytochrome C oxidoreductase rieske 2Fe-2S subunit HPP12_1545 1642056 - 1643294 + | ubiquinol cytochrome C oxidoreductase cytochrome B subunit HPP12_1546 1643291 - 1644148 + | ubiquinol cytochrome C oxidoreductase cytochrome C1 HPP12_1547 1645658 - 1644558 - | hypothetical protein TERM 1497 1644920 - 1644931 + g 76 -3.6 -5.252 | CAAACGAATTTAAAA GCCT TTTG GGGC TTTTTTCTAGCGGTG ftsI 1647834 - 1645987 - | cell division protein FtsI TERM 1498 1647714 - 1647701 - G 87 -5.3 -5.40072 | overlap 1647703 GCTTGGGCAAAAAAA GCTTT TTTA AAAGC CACCATTAAAAAAAT fliE 1648319 - 1647990 - | flagellar hook-basal body protein FliE TERM 1499 1648046 - 1648066 + g 72 -8.3 -3.61268 | overlap 1648049 CTTTGTTGCGCACTT CAAGCATGA GTT TCATGCTCG TTTCAGCCTTCCCTA flgC 1648932 - 1648447 - | flagellar basal-body rod protein FlgC flgB 1649367 - 1648945 - | flagellar basal-body rod protein FlgB TERM 1500 1649583 - 1649596 + G 76 -2.3 -5.47399 | AAATCCTAATGACTA CAGAC AAAA GCCTG TTTTTTTGCGCTTCA TERM 1501 1650076 - 1650092 + G 76 -7.3 -4.17048 | opp_overlap 1650076, overlap 1650091 GGGGGTTTTGCAAAA CGATTTG GGG CAGATCG TTCTTTTGGGAGCGG TERM 1502 1650676 - 1650690 + G 72 -8.6 -3.53722 | GAGCTATGGAGGGAG TTCGCT TCT AGCGAA TTGTATCGCTATAGG ftsW 1649576 - 1650742 + | cell division protein FtsW HPP12_1553 1651767 - 1650766 - | iron(III) ABC transporter periplasmic iron-binding protein TERM 1503 1650826 - 1650813 - G 70 -3.1 -4.98531 | overlap 1650806 CGTTCAAATCAAAAA CCACT TTAT AGTAG TCTTTAACAATCGCA TERM 1504 1652122 - 1652137 + G 74 -4.8 -4.75518 | ACGGTGCGATCCTTT TCTTTT GGCC AAAAGA TTTTACTTTTGTATG HPP12_1554 1652007 - 1652603 + | alkyl hydroperoxide reductase TERM 1505 1652590 - 1652606 + F 81 -8.1 -4.15249 | opp_overlap 1652590 1652589 ATCTCAAAGAAAATT CCATTAA GCT TTAATGG TTTGATTTGCTGTTT TERM 1506 1652617 - 1652656 + F 93 -7.4 -5.44638 | gap 1, opp_overlap 1652628, overlap 1652618 1652619 AATGGTTTGATTTGC TG-TTTGATCAAGAGAAAC TTC GTTTCTCTTGATTGAATCC TTTTCTTTTTATTCT TERM 1507 1652618 - 1652655 + F 90 -10.9 -3.83123 | gap 1, opp_overlap 1652628, overlap 1652617 1652619 ATGGTTTGATTTGCT G-TTTGATCAAGAGAAAC TTC GTTTCTCTTGATTGAATC CTTTTCTTTTTATTC TERM 1508 1652619 - 1652653 + F 100 -14.6 -3.4503 | opp_overlap 1652628, overlap 1652618 1652617 TGGTTTGATTTGCTG TTTGATCAAGAGAAAC TTC GTTTCTCTTGATTGAA TCCTTTTCTTTTTAT TERM 1509 1652644 - 1652628 - f 74 -9.5 -3.14132 | opp_overlap 1652619 1652618 1652617 TTGCTGTTTGATCAA GAGAAAC TTC GTTTCTC TTGATTGAATCCTTT TERM 1510 1653154 - 1653143 - g 74 -4.4 -4.86133 | CACAGACATTAAAAA CCTT AAAA AAGG CTCAGTGATTGCTGT HPP12_1555 1652751 - 1653566 + | outer membrane lipoprotein pbp2 1655804 - 1654038 - | penicillin-binding protein 2 TERM 1511 1654508 - 1654498 - G 74 -4.6 -5.00616 | GGCGTGGCTAAAAAA GAGC CTT GCCC AATAGCAGTAATGAG TERM 1512 1655846 - 1655821 - R 70 -8.3 -3.26262 | overlap 1655820 CAAACCCCACAAAAG CGCTCTCTATG AGTG CAAAAAGAGCG AGAAAACCGAGTATT HPP12_1557 1656229 - 1655801 - | hypothetical protein TERM 1513 1656131 - 1656119 - G 89 -5.5 -5.40014 | AAACAAGAATAAAAA CCCAA TCA TCGGG GGTAAAAAAGGCATT engB 1656867 - 1656241 - | GTP-binding protein EngB HPP12_1559 1657421 - 1656864 - | hypothetical protein TERM 1514 1657105 - 1657120 + g 76 -9 -3.62859 | opp_overlap 1657098 TTATAAATGAGCTTG TCAGCG CTCC CGCTGA TTTCACGATTATCCT HPP12_1560 1658014 - 1657421 - | hypothetical protein HPP12_1561 1658483 - 1657989 - | ABC transporter inner membrane protein rlpA 1659424 - 1658480 - | rare lipoprotein A TERM 1515 1658817 - 1658833 + g 72 -3.6 -5.04385 | opp_overlap 1658817, overlap 1658818 CCCAAAACAATGAGA CGCACG CTGGC CGTGCC TTTTTTAACCATGTC dniR 1660542 - 1659424 - | regulatory protein DniR HPP12_1564 1661394 - 1660630 - | DNAse of the TatD family TERM 1516 1661809 - 1661826 + G 75 -5.5 -4.80959 | TGGATTTTTTCATCA GCGCTTC TAAA GAAACGC TTTTATTGTGCGTTG TERM 1517 1662039 - 1662028 - g 78 -3 -5.42259 | CTATTTTGAAAAAAA CAAA AGGG TTTG AAAAAAATTTCTCTT ribC 1661469 - 1662089 + | riboflavin synthase alpha subunit TERM 1518 1662149 - 1662130 - g 70 -9.3 -3.23393 | overlap 1662128 CTCTAGCCTATAACA TGGGGCA AGATCA TGCCCCA AAAGTGATCGCAAGC flhB-2 1662090 - 1662362 + | FlhB-related flagellar biosynthesis protein HPP12_1567 1662384 - 1663367 + | ABC transporter ATP-binding protein TERM 1519 1663510 - 1663489 - g 76 -4.5 -5.1675 | gap 1, opp_overlap 1663490, overlap 1663490 TTAGTGAGTAAAAAA GGGCATTTGT TAA ACAAAC-CCC TTTTGCATAAGATTT HPP12_1568 1663369 - 1664016 + | ABC transporter permease protein TERM 1520 1664054 - 1664085 + T 77 -5.4 -4.94992 | opp_overlap 1664054 1664055, overlap 1664056 TCCAACAAATTAGAA CTTTTTTTGAAAAA AAAT TTTTTGAAAGAAAG TTTTTATCGGTTTAG TERM 1521 1664056 - 1664070 + T 73 -4.4 -5.00616 | opp_overlap 1664055 1664054, overlap 1664054 CAACAAATTAGAACT TTTTTT GAA AAAAAA TTTTTTGAAAGAAAG HPP12_1569 1665166 - 1664048 - | lps biosynthesis protein HPP12_1570 1665643 - 1665215 - | hypothetical protein TERM 1522 1665325 - 1665337 + g 70 -3.4 -4.8543 | opp_overlap 1665325, overlap 1665327 GGGCAACGCATGCAA GCTT GTTGG AAGC TTTTTCTAACGATTG TERM 1523 1665467 - 1665453 - G 81 -5.6 -5.01732 | opp_overlap 1665452 1665453 AAGTTCTCTAAAAAA GCGCTT TGA AGGCGC ATTTGGGTGCGATCA HPP12_1571 1666315 - 1665653 - | hypothetical protein HPP12_1572 1667256 - 1666246 - | undecaprenyl phosphate N-acetylglucosaminyltransferase TERM 1524 1666781 - 1666770 - GH 78 -7.2 -4.37013 | AATGAATGACTAAAA GCGC AATC GCGC AAATCCCTGATGCAA TERM 1525 1667116 - 1667132 + gH 80 -9.3 -3.69395 | opp_overlap 1667110 1667109 AAGAAAGATCCCAAG CCCCCCG GCT CGTGGGG TTCTTGCATGATGAA pdxJ 1667383 - 1668171 + | pyridoxal phosphate biosynthetic protein pdxA 1668173 - 1669096 + | pyridoxal phosphate biosynthetic protein A TERM 1526 1669777 - 1669789 + G 72 -4.7 -4.77757 | opp_overlap 1669775 1669777 TCCCTTTAAAAAACA GCCCG AAT CTGGC TTTTAGTTTTTCAGG ydiE 1669161 - 1670183 + | O-sialoglycoproptein endopeptidase flgG-2 1670362 - 1671150 + | flagellar basal-body rod protein TERM 1527 1671230 - 1671247 + T 74 -6.3 -4.38116 | TGGTTTTGTGTTTTG GAGTGGT TGCT ACCATTC TTTAATTTTTGTGGC HPP12_1577 1671395 - 1671249 - | hypothetical protein TERM 1528 1671361 - 1671347 - G 87 -5 -5.52384 | overlap 1671349 TTTTGATGAAAAAAA CAGCTA AAA TAGCTA GACCAACGAGAAAGA TERM 1529 1671359 - 1671349 - G 70 -5.4 -4.40552 | overlap 1671347 TTGATGAAAAAAACA GCTA AAA TAGC TAGACCAACGAGAAA HPP12_1578 1671973 - 1671626 - | hypothetical protein HPP12_1579 1672175 - 1671942 - | hypothetical protein HPP12_1580 1672666 - 1672526 - | hypothetical protein TERM 1530 1672596 - 1672607 + g 72 -4.4 -4.77757 | TGGCTATTTTTTTGA CAAC TTTC GTTG TTTTGATTTTTAGCA TERM 1531 1672693 - 1672716 + r 83 -9.6 -3.83323 | opp_overlap 1672694, overlap 1672694 TAAATTAAAATAAAA ACTAGATGCG TTTT CGCATCTAGG TTTCCATTCTATACC TERM 1532 1672715 - 1672694 - R 100 -13.1 -5.56372 | opp_overlap 1672693 1672694 AAATTAAAATAAAAA CTAGATGCG TTTT CGCATCTAG GTTTCCATTCTATAC TERM 1533 1672694 - 1672715 + r 87 -13.1 -2.89511 | opp_overlap 1672694, overlap 1672693 AAATTAAAATAAAAA CTAGATGCG TTTT CGCATCTAG GTTTCCATTCTATAC HPP12_1581 1673513 - 1672752 - | hypothetical protein SEQUENCE gi|210135770|ref|NC_011499.1| Helicobacter pylori P12 plasmid HPP12, complete sequence (length 10225) HPP12_p01 1171 - 8 - | MccC TERM 1 205 - 178 - G 71 -9.4 -2.83677 | opp_overlap 174 178, overlap 165 AAGTAAGGGATGAGA TTTTCTCTTTAC TGAC ATAAAGAGAAAA TTGATAACTTACAAT HPP12_p02 2235 - 1183 - | MccB TERM 2 2308 - 2286 - R 79 -10 -3.18429 | opp_overlap 2286 2285 TAAAACTTTGAGCAA TTACACTCTA AAA TAGAGTGCAA AATTTTTCAATTTAA HPP12_p03 2343 - 2320 - | MccA HPP12_p04 4497 - 2515 - | relaxase HPP12_p05 3254 - 2553 - | MobD HPP12_p06 3794 - 3264 - | MobB HPP12_p07 4831 - 4487 - | MobC HPP12_p08 5026 - 5307 + | hypothetical protein TERM 3 5293 - 5311 + F 70 -8.2 -3.18728 | opp_overlap 5292 GAAATTTGGCAATAT GCTCTTAA TTC TTAGGAGC TTAAATGTTAGAAAT HPP12_p09 5316 - 5585 + | hypothetical protein TERM 4 5773 - 5783 + F 71 -3.2 -5.20154 | TTTCGCTCATATTTT CGTT TTA AGCG TTTTTTAGCTTGTAT TERM 5 6006 - 5996 - f 73 -4.6 -4.94058 | CCAACCTAAACAAAA CCGC CTA GCGA GCGTTAGCGAGCATT TERM 6 6219 - 6237 + F 77 -5.2 -4.92363 | overlap 6221 6222 AAACCCCAAAATATG TAGCGCGT CAT GCGCGTTG TTTTTATACATGTTT TERM 7 6222 - 6234 + F 80 -6.9 -4.5448 | overlap 6221 6219 CCCCAAAATATGTAG CGCGT CAT GCGCG TTGTTTTTATACATG TERM 8 6502 - 6512 + F 71 -3.2 -5.20154 | TTTCGCTCATATTTT CGTT TTA AGCG TTTTTTAGCTTGTAT TERM 9 6735 - 6725 - f 73 -4.6 -4.94058 | CCAACCTAAACAAAA CCGC CTA GCGA GCGTTAGCGAGCATT TERM 10 6948 - 6966 + F 77 -5.2 -4.92363 | overlap 6950 6951 AAACCCCAAAATATG TAGCGCGT CAT GCGCGTTG TTTTTATACATGTTT TERM 11 6951 - 6963 + F 80 -6.9 -4.5448 | overlap 6950 6948 CCCCAAAATATGTAG CGCGT CAT GCGCG TTGTTTTTATACATG TERM 12 8063 - 8039 - g 77 -6.5 -4.53034 | overlap 8040 GGGATAGAATCAAAA CCGCTGATTTT TGG AAAATTAGCGA AACAGAAACTTCAAT HPP12_p10 7531 - 9129 + | RepA HPP12_p11 9171 - 9908 + | Fic family protein