TransTermHP v2.07 (built on Jan 21 2009) 25 bins; sample size is 20000000 --pval-conf=/fs/szasmg2/carlk/TTupdate2/expterm.dat --gc=-2.3 --au=-0.9 --gu=1.3 --mm=3.5 --gap=6 --max-len=59 --min-stem=4 --max-loop=13 --min-loop=3 --uwin-length=6 --uwin-require=3 --max-hp-score=-2 --max-tail-score=-2.5 --loop-penalty=1,2,3,4,5,6,7,8,9,10,11 --start-cut=0 --end-cut=25 Genes: 0.652189 %AT, 1392510 nt, 8699 terms. Intergenic: 0.74157 %AT, H2T: 227319 nt, 2217 terms; T2T: 48521 nt, 1023 terms; H2H: 78238 nt, 1615 terms. Each terminator entry starts in column 3 and is of the form: term # start - end +/- regionconf hp tail | notes Followed by the sequence of the 5' tail, 5' stem, loop, 3' stem, and 3' tail. Genes are interspersed, and start the first column. SEQUENCE gi|94986445|ref|NC_008011.1| Lawsonia intracellularis PHE/MN1-00, complete genome (length 1457619) dnaA 358 - 1794 + | ATPase involved in DNA replication initiation prfA 2906 - 1827 - | peptide chain release factor 1 TERM 1 2314 - 2300 - G 71 -8.6 -3.01712 | overlap 2302 CTGCTTCTGGTAATA CAGCAA CAG TTGCTG CAGAAGTATGGATAC TERM 2 3103 - 3074 - H 75 -7.2 -4.13872 | opp_overlap 3075, overlap 3075 AGGTAACTATATAAA TTTCCTGCCACT CTGTGT AGTAGCAGGAAT ATACTACTGTTAATT TERM 3 3075 - 3102 + H 71 -8.5 -2.867 | opp_overlap 3075 3074 GGTAACTATATAAAT TTCCTGCCACT CTGTGT AGTAGCAGGAA TATACTACTGTTAAT TERM 4 3102 - 3075 - H 83 -10.7 -3.076 | opp_overlap 3075, overlap 3074 GGTAACTATATAAAT TTCCTGCCACT CTGTGT AGTAGCAGGAA TATACTACTGTTAAT LI0003 3122 - 3436 + | hypothetical protein hly 3454 - 4209 + | hemolysin A TERM 5 4286 - 4313 + T 77 -5.6 -5.0133 | opp_overlap 4286 4290 TATTTATTCATTTAA GGAAGAGAAATA GGTC TACTCCTCTTCC TTTTTTACAACAATA TERM 6 4313 - 4286 - T 79 -10 -3.08133 | opp_overlap 4286, overlap 4290 TATTTATTCATTTAA GGAAGAGAAATA GGTC TACTCCTCTTCC TTTTTTACAACAATA sodC 4879 - 4337 - | superoxide dismutase precursor (Cu-Zn) LI0006 4945 - 5214 + | hypothetical protein tlc 5549 - 7147 + | nucleotide transport protein TERM 7 7253 - 7295 + T 100 -13.7 -4.58585 | gap 1, opp_overlap 7260 GATTTTTTGATTTTG TAACCTAGCACTCTACCTCT ACTT AG-GGTATGGTGCTAGGTTA TTTATTATTTAACTA LI0008 7904 - 7665 - | hypothetical protein TERM 8 8021 - 8037 + r 70 -5.3 -4.66609 | opp_overlap 8021 TTCTTCTATACTTAA TAAAAAT TGT ATTTTTA TTTTTAGCTAAAATA LI0009 8735 - 8001 - | hypothetical protein LI0010 8928 - 8623 - | hypothetical protein polB 10576 - 9617 - | DNA polymerase I LI0012 13571 - 10536 - | hypothetical protein TERM 9 12542 - 12560 + gr 79 -3.8 -5.42259 | overlap 12546 GTTCTACCTGCTCAG GAGTTGCT ATT AGCATTTC TTTTTTTAAAGCTGA TERM 10 12546 - 12556 + gr 81 -5.4 -5.20328 | overlap 12542 TACCTGCTCAGGAGT TGCT ATT AGCA TTTCTTTTTTTAAAG TERM 11 12860 - 12844 - GR 77 -5.9 -4.79075 | overlap 12845 AAAAACGTAAGAAAA CTTTCAG GAT CTGAAAA ACCACGAGGAGCCCA TERM 12 13696 - 13714 + r 100 -9 -5.20333 | TAAATATTTTTTATT TTCTTCTT ATA AAGAAGAA TTTTTATTATAGCTG TERM 13 13761 - 13743 - R 79 -6.2 -4.77122 | overlap 13746 TGATATAAAAAATAA TTATTTTA CTT TAAAATAA AGTAGAAGGAATATA TERM 14 14480 - 14466 - R 70 -7.8 -3.14924 | opp_overlap 14477, overlap 14456 14465 TAAATGAGGCAAAAC CTCGAG CAC CCCGAG CACCACGTTACTAGT TERM 15 14534 - 14511 - R 100 -9.6 -5.71712 | opp_overlap 14511 TTTTACATAAAAAAA GAACCTCTAG AATT CTAGCGGTTC TTTTTTTATGTAAAA TERM 16 14511 - 14534 + r 100 -9.6 -5.71712 | opp_overlap 14511 TTTTACATAAAAAAA GAACCTCTAG AATT CTAGCGGTTC TTTTTTTATGTAAAA TERM 17 14630 - 14615 - R 82 -6.2 -5.01497 | opp_overlap 14614 ATTATTATATAAAAA TAACTG ATAG CAGTTA ATTAGGTTGGAGTAG LI0013 15576 - 14779 - | 1-acyl-sn-glycerol-3-phosphate acyltransferase LI0014 16805 - 15573 - | recombination factor protein RarA upp 17369 - 16842 - | pyrimidine operon attenuation protein/uracil phosphoribosyltransferase TERM 18 17647 - 17629 - g 90 -3.9 -5.83822 | GATAGCTAAAAAAAA TACCTCT TTTGG AGAGATA GAATTACCTTGGTCT LI0016 17612 - 18394 + | hypothetical protein ubiE 19131 - 18406 - | methylase involved in ubiquinone/menaquinone biosynthesis TERM 19 18505 - 18470 - G 70 -7 -3.85522 | gap 1, opp_overlap 18467 18471, overlap 18471 AAGGGAGTATAATAA GCTTGATGAAAGCC-TG CTG CACGGATTTCATCAAGT AATTCATCAGGATGA TERM 20 18504 - 18471 - G 79 -10.5 -2.9059 | gap 1, opp_overlap 18467 18471, overlap 18470 AGGGAGTATAATAAG CTTGATGAAAGCC-TG CTG CACGGATTTCATCAAG TAATTCATCAGGATG TERM 21 18471 - 18504 + g 79 -10.5 -2.78216 | gap 1, opp_overlap 18471 18470, overlap 18467 AGGGAGTATAATAAG CTTGATGAAAGCC-TG CTG CACGGATTTCATCAAG TAATTCATCAGGATG gltP 20660 - 19389 - | proton/sodium-glutamate symport protein TERM 22 20229 - 20213 - G 70 -3.7 -4.90525 | TAACTGCAAAGAAAA TAACTTG AAG CATGTTA CCATTGGCCAAAGCT TERM 23 20626 - 20610 - G 74 -2.3 -5.54885 | AATACCAAGAAAAAA TCCAA TAATCAT TTGGA CAGGCAAACTTATTT TERM 24 20702 - 20716 + r 80 -4.3 -5.52347 | opp_overlap 20702 ACCATATTAATATGA TAGCT ACTAA AGCTA TTTTTTACTTTTATT tagD 21483 - 20974 - | glycerol-3-phosphate cytidyltransferase trpS 22526 - 21519 - | tryptophanyl-tRNA synthetase TERM 25 22226 - 22244 + g 74 -6 -4.56133 | CAAGTAGAAGATTAA GTTCTGCA TGT TGTGGAAC TTTTGATTGTTGAAA LI0021 23203 - 22529 - | Zn-dependent proteases TERM 26 22905 - 22921 + g 73 -8.1 -3.54741 | opp_overlap 22904 22905 22907 GCAGGGCCTGCAAAG GATACTA ACA TAGTATC TTTACGGAGATCATA tyrS 24402 - 23206 - | tyrosyl-tRNA synthetase TERM 27 23477 - 23487 + g 82 -5.4 -5.28942 | GTAAATTCTTGCAGT GCTT CAT AAGC TTTTTCTTTGCCATG ogt 25084 - 24563 - | O-6-alkylguanine-DNA/cysteine-protein methyltransferase TERM 28 24829 - 24845 + g 76 -4.5 -5.0538 | opp_overlap 24829 TAAGGGTAAGTAAGA CTTTTTT TTG AAAAGAG TTTTTTGGAATAGAA TERM 29 24850 - 24866 + g 73 -8.1 -3.58343 | TTTGAAAAGAGTTTT TTGGAAT AGA ATTCCAA TTTAGAGGTAATAGA TERM 30 25104 - 25136 + r 100 -10 -4.98468 | gap 1, overlap 25106 TTTAACTAACTTGTT GCCAATGGAGTAAGG TACA CCTT-CTCCATTGAC TTGTTTTTTTATTGT TERM 31 25106 - 25134 + r 83 -11.2 -2.70812 | gap 1, overlap 25104 TAACTAACTTGTTGC CAATGGAGTAAGG TACA CCTT-CTCCATTG ACTTGTTTTTTTATT gcpE 26224 - 25145 - | enzyme involved in the deoxyxylulose pathway of isoprenoid biosynthesis TERM 32 25700 - 25732 + g 77 -8.7 -3.65068 | opp_overlap 25709, overlap 25709 GACAGAAGAAGATTT GATGGAAACTTTTAT TTC ATAAAATTTTTCATC TTCTAATATTTTTAT TERM 33 25709 - 25723 + g 73 -4.4 -4.90906 | opp_overlap 25709, overlap 25700 AGATTTGATGGAAAC TTTTAT TTC ATAAAA TTTTTCATCTTCTAA ppsA 29891 - 26307 - | phosphoenolpyruvate synthase/pyruvate phosphate dikinase TERM 34 27924 - 27946 + g 93 -3.4 -6.11644 | overlap 27926 TTGTATAGTTTTACG GAGATGTACT TCA AGTTCATCTA TTTTTTTTTGGATAA TERM 35 27926 - 27944 + g 77 -6 -4.70383 | overlap 27924 GTATAGTTTTACGGA GATGTACT TCA AGTTCATC TATTTTTTTTTGGAT birA 31131 - 30148 - | biotin-(acetyl-CoA carboxylase) ligase fliM 32184 - 31207 - | flagellar motor switch protein TERM 36 31756 - 31766 + g 77 -5.4 -4.8622 | opp_overlap 31745 31753 AATACGAGTAAACTC TCGA CCT TCGA TTTTTGGTTGAGAGC TERM 37 32085 - 32075 - G 71 -5.4 -4.56914 | overlap 32082 TTAGCTAAATCAAAA GGAA CAA TTCC AGAATCATCTTCAGG LI0028 32258 - 32746 + | hypothetical protein TERM 38 32833 - 32802 - T 79 -8.2 -3.94381 | gap 1, opp_overlap 32802 AGATAACGTTATAAA GAGCCTATAATACCT TGT ATG-ATTATAGGCTC TTTTGACAGCTTTCA TERM 39 32802 - 32833 + T 80 -8.2 -4.12942 | gap 1, opp_overlap 32802 AGATAACGTTATAAA GAGCCTATAATACCT TGT ATG-ATTATAGGCTC TTTTGACAGCTTTCA LI0029 34476 - 32974 - | hypothetical protein TERM 40 33034 - 33068 + g 77 -8.6 -3.60584 | opp_overlap 33034, overlap 33032 AACTTGTCCTATAAA CCCTTTTTGTAGAGCA TGG TGTCCTACAAATGGGG TCTTTCGTTCTACTT LI0030 35818 - 34646 - | hypothetical protein LI0031 36365 - 35907 - | hypothetical protein LI0032 37960 - 36644 - | hypothetical protein TERM 41 37719 - 37741 + g 72 -9.2 -2.69601 | overlap 37717 CTTGTGGAATGAAGT GGTTCTTGAA TGT TTCGAGGACC TGCATTTACTATGGA TERM 42 37818 - 37843 + g 100 -13.5 -4.36914 | CGTACCTTAATTGTT TTTGCTGATCT AAAG AGATCAGCAAA TTTTCTAAAAGAAGA ostA 40854 - 38434 - | organic solvent tolerance protein OstA alr 40989 - 42131 + | alanine racemase, catabolic fur 42592 - 42140 - | Fe2+/Zn2+ uptake regulation proteins TERM 43 42417 - 42427 + g 82 -3.2 -5.69473 | GTTGCTTGCCCAAGA GAGG GAT CTTC TTTTTTTATAATATG TERM 44 42563 - 42581 + g 71 -5.3 -4.60889 | opp_overlap 42563 AAAACTACGGAGAAT GCTTTCA ATTCC TGGAAGC TTTTTAGACATAATT rfaF 43955 - 42906 - | ADP-heptose:LPS heptosyltransferase II TERM 45 43932 - 43944 + g 75 -4.9 -4.87665 | TGATTTTATGGTAGT TGAAT ATA ATTCA TTTTTGTCCATAAAA TERM 46 44160 - 44145 - RH 72 -6.2 -4.34345 | opp_overlap 44145 TATATATTATCAAAA TAGTTG TTAT CAACTA TTTTACCAGTTTAAT TERM 47 44145 - 44160 + rH 70 -6.2 -4.17491 | opp_overlap 44145 TATATATTATCAAAA TAGTTG TTAT CAACTA TTTTACCAGTTTAAT LI0037 44535 - 44293 - | transcriptional regulator LI0038 44534 - 45043 + | putative exported nuclease TERM 48 45081 - 45123 + FH 72 -6.2 -4.20491 | gap 1, opp_overlap 45086, overlap 45083 45086 ATAATATAGTATAGG TAT-AATTATATTTAATAA TAAAAT TTATTAAATATAATTGATA TATTTTTATTGATGT TERM 49 45086 - 45117 + FH 70 -7.7 -3.50488 | opp_overlap 45086, overlap 45083 45081 ATAGTATAGGTATAA TTATATTTAATAA TAAAAT TTATTAAATATAA TTGATATATTTTTAT LI0039 45343 - 45816 + | hypothetical protein LI0040 45849 - 47372 + | hypothetical protein TERM 50 49040 - 49021 - g 76 -6.4 -4.53439 | opp_overlap 49021 49019 49024, overlap 49024 TTAAATCCAAATAAA CAACCTGA TGGA TCAGGTGG TGTTATGAATTTATC TERM 51 49037 - 49024 - g 74 -6.7 -4.35189 | opp_overlap 49024 49021 49019, overlap 49021 AATCCAAATAAACAA CCTGA TGGA TCAGG TGGTGTTATGAATTT TERM 52 49321 - 49298 - g 71 -5.3 -4.56775 | ATGCTTTCCCAAAAA GGTTAGGAG GTCTTA CTTCTAACC AGCTAAAAAACTTGG LI0041 47683 - 49611 + | hypothetical protein LI0042 49861 - 50334 + | hypothetical protein TERM 53 50560 - 50544 - g 70 -4.3 -4.75472 | GGGACACTAACAAAA GCAAGTC CTC GTCCTGC AAATGGCACTCAGGA LI0043 50406 - 53108 + | hypothetical protein mdoB 55779 - 53869 - | hypothetical protein TERM 54 54184 - 54167 - G 76 -2.7 -5.40072 | TTCTTTCCAAAAAAA CTAGAAC TATA ATTCCAG TTCAATAGTGAAAAA TERM 55 54830 - 54864 + g 87 -10 -4.04579 | opp_overlap 54829 54828 54825 AGACTTAAGATAATT GCTTCAAGACCTCGTA CAG TACGAGTTCCTGTAGC TTTCATATTTGTGAA TERM 56 55940 - 55954 + H 77 -7.2 -4.36411 | AATCATTTACGTTTT CTTCTA TTA TAGAAG TTTTGATGCTTACTA TERM 57 56552 - 56527 - H 74 -4.9 -4.96388 | opp_overlap 56518, overlap 56528 AATTATTAAATAAAA TTTATTATTTC TACA GAAATAATAAC ACTTAAGTAGATTAA TERM 58 56551 - 56528 - H 77 -8.4 -3.56206 | opp_overlap 56518, overlap 56527 ATTATTAAATAAAAT TTATTATTTC TACA GAAATAATAA CACTTAAGTAGATTA TERM 59 58722 - 58709 - g 76 -2.5 -5.39721 | opp_overlap 58721 TGATTATAGAAAAAA TATTA ATGA TAATA TAGCTATGTTATATG TERM 60 58923 - 58903 - g 84 -5.5 -5.54338 | TAAGTAAAATAAAAA CAAAAAGTC CAG GATTTTTTG TAAATGAGAACTGGA LI0045 56748 - 59387 + | hypothetical protein TERM 61 59447 - 59485 + F 100 -14.8 -4.11751 | opp_overlap 59452, overlap 59452 TAATTAGATAACTTA AAAAAGATGAGAGAAGCT TAA AGCTTCTCTCATCTTATA TTTTAAAGAATTAAT TERM 62 59480 - 59452 - f 100 -19.1 -5.20154 | opp_overlap 59452 59447 AGATAACTTAAAAAA GATGAGAGAAGCT TAA AGCTTCTCTCATC TTATATTTTAAAGAA TERM 63 59452 - 59480 + F 100 -19.1 -3.95435 | opp_overlap 59452, overlap 59447 AGATAACTTAAAAAA GATGAGAGAAGCT TAA AGCTTCTCTCATC TTATATTTTAAAGAA TERM 64 59564 - 59586 + F 78 -9.4 -3.1637 | overlap 59553 59554 59566 TTAGTTTTTTATCCA TGTAAAAAAT TTA ATTTTTTACA TTAATAAGACTATAT LI0046 60142 - 60534 + | hypothetical protein TERM 65 61128 - 61152 + T 74 -8.9 -3.02144 | opp_overlap 61151, overlap 61130 AAATGGAATAGATCT TATTTTTTATA CAA TATAAAAAATA TCTTGAAGAAGATAA TERM 66 61166 - 61151 - T 83 -4.8 -5.53436 | opp_overlap 61128 ATACAATATAAAAAA TATCTT GAAG AAGATA AAAACTAAATAGTTT secF 62695 - 61583 - | preprotein translocase subunit SecF secD 64281 - 62698 - | preprotein translocase subunit SecD yajC 64770 - 64432 - | preprotein translocase subunit YajC TERM 67 65405 - 65433 + r 70 -8.3 -2.69428 | opp_overlap 65420 65431, overlap 65401 65431 CCTCTTGACAGTCAG TTGTATTTCACAA TAC TTGCGGAATACAA GTTGATTACTTGTTG LI0050 69043 - 65816 - | uncharacterized protein involved in outer membrane biogenesis TERM 68 66383 - 66400 + g 75 -7 -4.09353 | opp_overlap 66382 ATTAGTTGAAAGAGG GCAAGC CTTAAA GCTTGC TTCTGTTTTTCCATC TERM 69 66860 - 66885 + g 75 -8.3 -3.78235 | overlap 66865 AAGATTTTGTGTCAT GACAGTGAGAG AACC CTCCCATTGTC TTGTGTTACTTGTAC uvrD 72304 - 69095 - | ATP-dependent exoDNAse beta subunit TERM 70 71529 - 71539 + gr 71 -3.2 -5.12707 | GTTCCTATCTGACAA GCTT CAA GAGC TTTTTTAAAATTTGA TERM 71 72067 - 72088 + gr 85 -10.9 -3.13073 | opp_overlap 72066 72067, overlap 72065 72064 ATCGAGTTATAATAC GCTGTTGCA TTTC TGCAGCAGC TCTATTGGTAAAGGT TERM 72 72088 - 72067 - GR 70 -8.7 -2.54919 | opp_overlap 72067 72065 72064, overlap 72066 ATCGAGTTATAATAC GCTGTTGCA TTTC TGCAGCAGC TCTATTGGTAAAGGT pfp 73637 - 72270 - | diphosphate--fructose-6-phosphate 1-phosphotransferase LI0053 74229 - 74561 + | hypothetical protein LI0054 75781 - 74909 - | rRNA methylases mltD 75939 - 77606 + | membrane-bound lytic murein transglycosylase D (MltD) LI0056 78435 - 77677 - | nitrate ABC transporter, permease protein (nrtB-1) TERM 73 78188 - 78177 - G 74 -3 -5.34555 | TGATAGGAGAAAAAA TAGT ATCT ACTA AATGTTTAGTACCAA LI0057 79178 - 78432 - | nitrate ABC transporter, ATP-binding protein (nrtC-1) LI0058 80086 - 79175 - | thiamine biosynthesis protein, putative LI0059 80428 - 80937 + | hypothetical protein TERM 74 80948 - 80983 + F 100 -13.6 -4.62163 | opp_overlap 80939 80951 80954, overlap 80951 ACTAATTTATTTATT AAATAATAGTCCATCA ATAT TGATGGACTATTATTC TTTCTCTTTTTCTCT TERM 75 80951 - 80980 + F 100 -15.3 -4.36378 | opp_overlap 80939 80951 80954, overlap 80948 AATTTATTTATTAAA TAATAGTCCATCA ATAT TGATGGACTATTA TTCTTTCTCTTTTTC TERM 76 80980 - 80951 - f 100 -15.3 -3.76968 | opp_overlap 80951 80948, overlap 80939 80954 AATTTATTTATTAAA TAATAGTCCATCA ATAT TGATGGACTATTA TTCTTTCTCTTTTTC TERM 77 80977 - 80954 - f 100 -12.6 -4.015 | opp_overlap 80951 80948, overlap 80951 TTATTTATTAAATAA TAGTCCATCA ATAT TGATGGACTA TTATTCTTTCTCTTT TERM 78 81399 - 81418 + F 70 -6.6 -4.05245 | TAATTAGCGTTATTA TCTTAAAA AATA TTTTAAGA TTTACTTATATAATC TERM 79 81974 - 81948 - g 82 -3.1 -5.58454 | gap 1, overlap 81950 81953 81972 TTCAGAGGAAAAAAA TAGAATTGCAAG GTTA CTTGCAAATC-A CATCCCTGATGGAGC TERM 80 81973 - 81950 - g 83 -8.2 -4.42962 | overlap 81948 81953 81972 CAGAGGAAAAAAATA GAATTGCAAG GTTA CTTGCAAATC ACATCCCTGATGGAG TERM 81 81970 - 81953 - g 89 -8.5 -4.28925 | overlap 81950 81948 AGGAAAAAAATAGAA TTGCAAG GTTA CTTGCAA ATCACATCCCTGATG TERM 82 82442 - 82456 + G 73 -4.2 -4.86001 | GTCAGTTAGTGGAGA GTTCAG GAA CAGAAC TTTTTATAGCCTGAT glpR 81700 - 82470 + | transcriptional regulators of sugar metabolism LI0061 82877 - 82557 - | hypothetical protein TERM 83 83166 - 83146 - R 70 -8.5 -2.61201 | opp_overlap 83145, overlap 83145 83143 AAAATACTACAACAG TCTATATTA ATC TAATATAGA ACATTATTATAAAAA ybeN 84085 - 83393 - | nicotinic acid mononucleotide adenylyltransferase LI0063 84629 - 85216 + | hypothetical protein LI0064 85844 - 86242 + | transcriptional regulator TERM 84 86294 - 86259 - T 73 -8.6 -3.24386 | opp_overlap 86273, overlap 86243 86238 86260 AAAAGTTATTATTAA CTTTTAACTAACATCA TTAA TAATGTTAGCTAAAAA AGGGGGGAGAGTAAT TERM 85 86293 - 86260 - T 78 -9.9 -2.53908 | opp_overlap 86273, overlap 86243 86238 86259 AAAGTTATTATTAAC TTTTAACTAACATCA TTAA TAATGTTAGCTAAAA AAGGGGGGAGAGTAA TERM 86 86319 - 86296 - T 100 -12.4 -5.09225 | opp_overlap 86296, overlap 86298 ATGTTAGCTAAAAAA GGGGGGAGAG TAAT CTCTCCCCTC TTTTTTTAATTTTTT TERM 87 86296 - 86319 + T 100 -14.6 -5.88061 | opp_overlap 86296 86298 ATGTTAGCTAAAAAA GGGGGGAGAG TAAT CTCTCCCCTC TTTTTTTAATTTTTT TERM 88 86317 - 86298 - T 100 -13.6 -2.78405 | opp_overlap 86296, overlap 86296 GTTAGCTAAAAAAGG GGGGAGAG TAAT CTCTCCCC TCTTTTTTTAATTTT TERM 89 86349 - 86374 + T 74 -7.8 -3.4811 | opp_overlap 86363 86373, overlap 86347 TATAATAGTTAGGTA TACTTTTTCT AAGATA AGAAAAAGTA TCTTATTATAGAAGA LI0065 87169 - 86420 - | Outer membrane lipoprotein-sorting protein ftsK 89860 - 87173 - | DNA segregation ATPase FtsK/SpoIIIE and related proteins TERM 90 88166 - 88185 + g 71 -7.9 -3.63341 | overlap 88162 88180 TGCGCCTGTTGTTCC TGCCACA AGAATG TGTGGCA TTGTTGCCAAGTCTT LI0067 90494 - 89937 - | translation elongation factor P (EF-P)/translation initiation factor 5A (eIF-5A) LI0068 90801 - 91409 + | GTPase EngB TERM 91 92216 - 92257 + F 100 -8.4 -5.64274 | opp_overlap 92221 AATGAATATTCATTA TGATAGGTTAAGTTAT TTATATTCTT ATAACTTAACCTATTA TTTTTTTCTAAATAG TERM 92 93071 - 93057 - g 89 -8.6 -4.30977 | overlap 93052 AACAAACAAACCAAA CAGAAG AAA CTTCTG GTCGTAGATCTTCAA LI0069 92957 - 93616 + | hypothetical protein LI0070 93731 - 94156 + | hypothetical protein LI0071 94285 - 94833 + | hypothetical protein LI0072 94921 - 95379 + | hypothetical protein TERM 93 95472 - 95487 + F 100 -6.2 -5.47431 | opp_overlap 95472 TAAATGAATTAATAA GGTATA TTTT TATACC TTTTTTATATATTAG LI0073 95597 - 96073 + | hypothetical protein TERM 94 96573 - 96627 + T 100 -20.1 -5.48787 | gap 1, opp_overlap 96580 96582 96584 96586 96592, overlap 96576 TATTATGGATGTATT TAGGATAGATATATAAAAATGATACT TGGG AGTATCATTTTTATATATCTATC-TA TTTTTTGTATATTAT TERM 95 96576 - 96625 + T 100 -24.3 -4.35708 | opp_overlap 96580 96582 96584 96586 96592, overlap 96573 TATGGATGTATTTAG GATAGATATATAAAAATGATACT TGGG AGTATCATTTTTATATATCTATC TATTTTTTGTATATT TERM 96 96621 - 96580 - T 100 -19.3 -2.81133 | opp_overlap 96576 96573, overlap 96582 96584 96586 96592 GATGTATTTAGGATA GATATATAAAAATGATACT TGGG AGTATCATTTTTATATATC TATCTATTTTTTGTA TERM 97 96619 - 96582 - T 100 -16.1 -2.95298 | opp_overlap 96576 96573, overlap 96580 96584 96586 96592 TGTATTTAGGATAGA TATATAAAAATGATACT TGGG AGTATCATTTTTATATA TCTATCTATTTTTTG TERM 98 96617 - 96584 - T 100 -14.3 -3.02947 | opp_overlap 96576 96573, overlap 96582 96580 96586 96592 TATTTAGGATAGATA TATAAAAATGATACT TGGG AGTATCATTTTTATA TATCTATCTATTTTT TERM 99 96615 - 96586 - T 100 -12.5 -3.0682 | opp_overlap 96576 96573, overlap 96584 96582 96580 96592 TTTAGGATAGATATA TAAAAATGATACT TGGG AGTATCATTTTTA TATATCTATCTATTT TERM 100 96609 - 96592 - T 86 -7.1 -5.08178 | opp_overlap 96576 96573, overlap 96586 96584 96582 96580 ATAGATATATAAAAA TGATACT TGGG AGTATCA TTTTTATATATCTAT LI0074 97961 - 97539 - | rhodanese-related sulfurtransferase TERM 101 97669 - 97685 + g 70 -8.1 -3.33464 | overlap 97668 TTTTTGCTATTATTA CCTATTA ATA TAATAGG CTTTGTTGTTTCAAG icc 98193 - 98996 + | phosphodiesterase LI0076 99014 - 100063 + | sugar ABC transporter, ATP-binding protein TERM 102 100902 - 100915 + G 70 -3.9 -4.95957 | overlap 100912 ACGACCCTAGAGCTG TTGAA GCAC TTCAA TTTTTAGTTGATTTA ugpB 100196 - 101491 + | extracellular solute-binding protein TERM 103 101660 - 101672 + G 86 -4.9 -5.64274 | TTCCGATAACCTCTA CTATT ATT AATAG TTTTTTTATGAATGG TERM 104 101767 - 101777 + G 76 -2.6 -5.44638 | GTATTTCGAAAAGCT TTAT GGA ATAA TTTTATTTTTGTTAT TERM 105 101918 - 101934 + G 78 -2.3 -5.75342 | TACCTATGATTGCTG TAGCTAA CAT TTGGTTA TTTTTTTTCACACCA ugpA 101554 - 102441 + | inner membrane component of binding-protein-dependent transport system LI0079 102438 - 103274 + | inner membrane component of binding-protein-dependent transport system TERM 106 103363 - 103410 + T 70 -8.2 -3.15548 | gap 1, opp_overlap 103369, overlap 103358 103366 103369 103374 TTAGTAATAGTAATT TTAGAAGAAAATTATTGATGATT ATA AATCAT-GATAATTTTCTTCTGC TGTATCTTCATTACT TERM 107 103366 - 103407 + T 88 -12.1 -2.7709 | gap 1, opp_overlap 103369, overlap 103358 103363 103369 103374 GTAATAGTAATTTTA GAAGAAAATTATTGATGATT ATA AATCAT-GATAATTTTCTTC TGCTGTATCTTCATT TERM 108 103369 - 103404 + T 74 -8 -3.52307 | gap 1, opp_overlap 103369, overlap 103358 103366 103363 103374 ATAGTAATTTTAGAA GAAAATTATTGATGATT ATA AATCAT-GATAATTTTC TTCTGCTGTATCTTC LI0080 104913 - 103384 - | hypothetical protein TERM 109 105071 - 105129 + H 100 -19.1 -2.51936 | gap 1, opp_overlap 105076 105086 105121 105123, overlap 105079 105086 105115 105121 TATAATTTTTTATCA -TTATAGTATGTATAATATATAAATAAT ACTA ATTATTTATATATTATACATACTATAAA ATCATTTTATAGTAT TERM 110 105123 - 105076 - H 100 -20.6 -2.82516 | opp_overlap 105071 105079 105086 105115 105121, overlap 105086 105121 TTTTTTATCATTATA GTATGTATAATATATAAATAAT ACTA ATTATTTATATATTATACATAC TATAAAATCATTTTA TERM 111 105079 - 105120 + H 100 -16.5 -2.64091 | opp_overlap 105076 105086, overlap 105071 105086 105115 TTTATCATTATAGTA TGTATAATATATAAATAAT ACTA ATTATTTATATATTATACA TACTATAAAATCATT TERM 112 105113 - 105086 - H 77 -8.8 -3.38768 | opp_overlap 105079 105071 105086, overlap 105076 TTATAGTATGTATAA TATATAAATAAT ACTA ATTATTTATATA TTATACATACTATAA TERM 113 105086 - 105113 + H 77 -8.8 -3.38768 | opp_overlap 105086 105076, overlap 105079 105071 TTATAGTATGTATAA TATATAAATAAT ACTA ATTATTTATATA TTATACATACTATAA TERM 114 105115 - 105148 + H 82 -7.9 -4.23758 | gap 1, opp_overlap 105076 105121 105123, overlap 105079 105071 105121 TAATTATTTATATAT TATACATACTATAAAA TCA TTTTATAGTAT-TATA TTTTGAATATAGAAT TERM 115 105143 - 105121 - H 77 -9.4 -2.99545 | opp_overlap 105071 105115 105121, overlap 105076 105123 TTTATATATTATACA TACTATAAAA TCA TTTTATAGTA TTATATTTTGAATAT TERM 116 105121 - 105143 + H 86 -9.4 -3.98224 | opp_overlap 105076 105121 105123, overlap 105071 105115 TTTATATATTATACA TACTATAAAA TCA TTTTATAGTA TTATATTTTGAATAT LI0081 105205 - 106146 + | nucleoside-diphosphate sugar epimerase LI0082 107283 - 106189 - | hypothetical protein kpsF 108380 - 107298 - | CBS domain-containing protein TERM 117 108080 - 108067 - G 78 -2.3 -5.60993 | overlap 108068 GGGTGCATAAAAAAA GCAGG AGTC CCTGT GGAGGAAAAAGTAGC TERM 118 109923 - 109935 + r 82 -6.3 -5.01497 | opp_overlap 109923 ACTACTACTACTACA TCTTC TTA GAAGA TTTTTATATAATGCT TERM 119 109975 - 109994 + r 100 -10.8 -4.56597 | opp_overlap 109975 GATAAGAAATAAAAA GCACAAGA ATCT TCTTGTGC TTTTTGGGGGCCGGG TERM 120 109994 - 109975 - R 100 -10.8 -5.50774 | opp_overlap 109975 GATAAGAAATAAAAA GCACAAGA ATCT TCTTGTGC TTTTTGGGGGCCGGG TERM 121 110051 - 110080 + r 79 -9.2 -3.50532 | gap 1, overlap 110047 110043 TTTCTTTCGAACCTG GCGGGGTTGGCGG ATCTA CCGCC-GCCCGGC TTCCTTAATTTAACT LI0084 111206 - 110475 - | hypothetical protein TERM 122 110885 - 110875 - G 77 -3.2 -5.48063 | AGCCAACAGAAAAAA CCTG CTC CAGA TCCAATATCAAGGAT TERM 123 111167 - 111179 + g 74 -3.5 -5.22312 | TTCTTCTATGTGCTG TATTT GTG AAATA TTTTTTGATATCACT TERM 124 111560 - 111575 + r 75 -3.4 -5.53436 | TAGGAGACAGCTAAT TTATTT ATAG AAATAA TTTTTTGTGTTATAT dnaK 112004 - 111603 - | molecular chaperone dnaK TERM 125 112177 - 112153 - R 78 -4.5 -5.44198 | opp_overlap 112154, overlap 112154 AAGAAATAATAAAAA TTTTTAATATA AAA TATATTAAAAT TTTTGAAATAGATAA TERM 126 112176 - 112154 - R 76 -8 -3.82859 | opp_overlap 112154, overlap 112153 AGAAATAATAAAAAT TTTTAATATA AAA TATATTAAAA TTTTTGAAATAGATA TERM 127 112154 - 112176 + r 86 -8 -4.62783 | opp_overlap 112154 112153 AGAAATAATAAAAAT TTTTAATATA AAA TATATTAAAA TTTTTGAAATAGATA LI0086 113177 - 112674 - | putative beta-D-galactosidase TERM 128 112732 - 112742 + g 84 -4 -5.59357 | TGAGTGAATGGAATT TTAG CTA CTAA TTTTTTTAGTGTGAT argD 114442 - 113180 - | acetylornithine aminotransferase dut 114896 - 114414 - | dUTPase TERM 129 114707 - 114724 + gH 89 -8.5 -4.41609 | opp_overlap 114706 114710 CAAGAGGCTCAATAG CAATACC ACAT GGTATTG TTTCTCTTTCTCCTG folE 115144 - 115653 + | 7-cyano-7-deazaguanine reductase LI0090 115673 - 116482 + | pantothenate kinase TERM 130 117299 - 117277 - g 74 -9.2 -3.11732 | opp_overlap 117283, overlap 117280 117291 GTTAAAGCTATTGAA GAAGCAGGAT ATA ATCCTGGTTC AGAAGTTATGTTGGC eno 116596 - 117897 + | enolase (2-phosphoglycerate dehydratase) rfaF/rfaQ 118954 - 117911 - | ADP-heptose:LPS heptosyltransferase LI0093 119487 - 120482 + | hypothetical protein TERM 131 121184 - 121197 + G 73 -8.1 -3.53012 | opp_overlap 121183 TTAGAAGGAAGAATT GGTGG TGAT CCACC TTTAACAGAAAAAGG pfk 120488 - 121714 + | fructose-2,6-bisphosphatase LI0095 123019 - 121739 - | CheY-like receiver LI0096 123490 - 123089 - | hypothetical protein TERM 132 123652 - 123638 - R 75 -7.2 -4.0942 | TAGTTACTATATAAA TGAAAG GAG CTTTCA AGGAGAGATAGATAA corA 125278 - 124343 - | CorA, CorA-like Mg2+ transporter protein LI0098 125579 - 126076 + | hypothetical protein argC 127141 - 126080 - | N-acetyl-gamma-glutamyl-phosphate reductase LI0100 127495 - 127145 - | hypothetical protein dgkA 128161 - 127796 - | diacylglycerol kinase polB 130795 - 128189 - | DNA polymerase I TERM 133 129536 - 129505 - G 70 -4.4 -4.78149 | gap 1, overlap 129509 CGGATAATCCAAAAA CTGAGCCCCAACGTG CAA CAAGTTTAGGC-CAG CTATAATCTCTTTCT TERM 134 131096 - 131112 + H 100 -6.7 -5.74086 | opp_overlap 131096 CTTTAGTTTATAGTA CTTTTTA TAG TAAAAAG TTTTTTGTTTAGTTT TERM 135 132081 - 132071 - g 71 -5.4 -4.57353 | GTGGATGACATAAAA TTGG CTG CCAA ACGTGTAGTCGATAC LI0103 131168 - 132442 + | hypothetical protein LI0104 132452 - 133093 + | hypothetical protein TERM 136 133792 - 133769 - g 93 -6.9 -5.42259 | opp_overlap 133769 133768 133769 TTAGGTTTAAAAAAA GAGAAAAAA TATGTT TTTTTTCTC ATTCTGCAAAGGCTG LI0105 133237 - 134181 + | hypothetical protein ilv 136017 - 134353 - | acetolactate synthase LI0107 136965 - 136036 - | permease TERM 137 137192 - 137158 - R 71 -6.9 -3.91281 | gap 1, opp_overlap 137158 137161, overlap 137160 GTAGATAAAAATGAA TATTATATCTAATATA TATA TATATTAGATATAA-A GGAGGCTCTCATTCT TERM 138 137191 - 137160 - R 93 -12 -3.52689 | opp_overlap 137158 137161, overlap 137158 AGATAAAAATGAATA TTATATCTAATATA TATA TATATTAGATATAA AGGAGGCTCTCATTC dapA 138253 - 137267 - | dihydrodipicolinate synthase/N-acetylneuraminate lyase TERM 139 137596 - 137580 - G 83 -5.1 -5.4833 | opp_overlap 137581, overlap 137581 GTAGGTAATAAAAAA CTTGCTG AAC CAGCAAT TACTGAAAAACCTGG TERM 140 137595 - 137581 - G 79 -8.6 -3.87914 | opp_overlap 137581, overlap 137580 TAGGTAATAAAAAAC TTGCTG AAC CAGCAA TTACTGAAAAACCTG TERM 141 137581 - 137595 + g 71 -8.6 -3.14344 | opp_overlap 137581 137580 TAGGTAATAAAAAAC TTGCTG AAC CAGCAA TTACTGAAAAACCTG TERM 142 139344 - 139326 - g 72 -6 -4.28375 | opp_overlap 139325 139326 139328, overlap 139319 GCAACATATCCAAAA CATCAGAA AGC TTCGGATG CTTTATTAAAAGTAG LI0109 138738 - 139481 + | hypothetical protein TERM 143 140178 - 140190 + G 88 -7.7 -5.14563 | TGCTCCTGGTACTCG TCCAG AGC CTGGA TTTTTTCCTACAAGA smf 139486 - 140751 + | Rossmann fold nucleotide-binding protein involved in DNA uptake TERM 144 141616 - 141598 - g 88 -13.2 -3.01924 | opp_overlap 141615, overlap 141600 CATTCTTTTGCAACA CACCTCCT TGA AGGAGGTG CAAACTTGCGTGCTG TERM 145 141614 - 141600 - g 77 -10 -3.06696 | overlap 141598 TTCTTTTGCAACACA CCTCCT TGA AGGAGG TGCAAACTTGCGTGC LI0111 140818 - 141759 + | site-specific recombinase XerC TERM 146 141838 - 141856 + T 70 -7.4 -3.53224 | GTTAGGCATGCTCAA CTTGCTGG ATG CCATCAAG TTTCCAAGAACCCTC LI0112 142765 - 141824 - | hypothetical protein engA 144319 - 142958 - | GTP-binding protein EngA serS 145688 - 144414 - | seryl-tRNA synthetase LI0115 145952 - 146530 + | hypothetical protein LI0116 146548 - 147627 + | TPR repeat-containing protein TERM 147 147726 - 147739 + G 79 -8.1 -3.93369 | overlap 147723 CTCATTGGAGCAGGA CCAGG TGAT CCTGG TTTACTTACAGTTAA TERM 148 148065 - 148078 + G 70 -8.1 -3.33151 | overlap 148063 AGTACCATTGCTGCA CCTGC ATAT GCAGG TATTCCTTTAACACA cysG 147699 - 149210 + | siroheme synthase TERM 149 149696 - 149672 - g 71 -8.7 -2.96695 | opp_overlap 149669, overlap 149669 TTGTTGATGAAATGA TGGATAATGGT TCT ATCATTATCCA AGCATGTATTCCTGT purN 149239 - 149922 + | phosphoribosylglycinamide formyltransferase msrA 150498 - 149998 - | peptide methionine sulfoxide reductase LI0120 150880 - 150473 - | methionine sulfoxide reductase B pepQ 151581 - 150925 - | Xaa-Pro aminopeptidase TERM 150 151737 - 151725 - H 71 -2.7 -5.45813 | TACTAAAAAAGAAAA CATCT TGA AGATA GGATATAATTAAAAG TERM 151 152493 - 152513 + G 82 -9.7 -3.68302 | TGGTTTTATTGGTTA TGGCCTCCA CTT TGGAGGGCA TTATTGGACTATTCC LI0122 152230 - 152988 + | cytochrome c biogenesis protein lacA 153696 - 153127 - | maltose O-acetyltransferase TERM 152 153839 - 153854 + H 72 -3.4 -5.37043 | TAACTTATTTAGCCT TATATT ATAA AATATA TTTTTTCTATGAAGT cbpA 154211 - 155119 + | DnaJ-class molecular chaperone LI0125 155138 - 155449 + | hypothetical protein clpB 155540 - 158173 + | ATPases with chaperone activity, ATP-binding subunit glnQ 158993 - 158235 - | ABC-type polar amino acid transport system, ATPase component glnP 159747 - 158962 - | ABC-type amino acid transport system, permease component TERM 153 159562 - 159544 - GR 70 -4.6 -4.64952 | overlap 159540 AATTATAGAAAGAAA TGTAACTT CAA ATGTTACA AAAATGCCATCAGGA LI0129 160547 - 159798 - | amino acid ABC transporter, periplasmic amino acid-binding protein hisJ 160881 - 161474 + | histidinol phosphatase and related phosphatases TERM 154 161859 - 161841 - g 83 -10.4 -3.15663 | opp_overlap 161835 ACGTATTTGTATTAA TGGTGAAA TGC TTTCACCA GAGGTATGGATTACT folC 161575 - 162882 + | folylpolyglutamate synthase TERM 155 163170 - 163186 + G 70 -7.3 -3.72324 | opp_overlap 163173, overlap 163173 TTGTTGTAAGGTTAT TAATGCC ACT GGCGTTA TTCTTCATACAAATA TERM 156 164052 - 164028 - g 73 -4.5 -4.93595 | AGAAAAAGCTAAAAA TATTCTTTCTA ATC TAAAAAAAATA TGCGGTGAAATGATA selA 162904 - 164340 + | selenocysteine synthase TERM 157 164465 - 164496 + F 93 -10.5 -4.06562 | opp_overlap 164471, overlap 164471 TTGTAGATTATTATT TAAAAAGATACAT GAGTTA ATGTATCTTTTTA TTTATAGTTAGGGTT TERM 158 164490 - 164471 - f 70 -5.1 -4.68994 | opp_overlap 164465 164471 ATTATTATTTAAAAA GATACAT GAGTTA ATGTATC TTTTTATTTATAGTT TERM 159 164471 - 164490 + F 85 -5.1 -5.4182 | opp_overlap 164471, overlap 164465 ATTATTATTTAAAAA GATACAT GAGTTA ATGTATC TTTTTATTTATAGTT LI0133 164510 - 164863 + | hypothetical protein LI0134 164954 - 166084 + | polymerase LI0135 166090 - 167793 + | hypothetical protein TERM 160 168090 - 168073 - f 72 -6.3 -4.30576 | opp_overlap 168073 TCTCCACTAGTAAAA GGCTAGT CATG ACTAACC CCTTTATTTCCTTCC TERM 161 168216 - 168184 - f 91 -12.3 -3.16921 | opp_overlap 168184 AGGAATCTCTACTAA TTTCAATATGTGCTT CCC AAACACATACTGAAA TTGCTTGGTGGCACG TERM 162 168184 - 168216 + F 72 -7.9 -3.39895 | opp_overlap 168184 AGGAATCTCTACTAA TTTCAATATGTGCTT CCC AAACACATACTGAAA TTGCTTGGTGGCACG TERM 163 168817 - 168837 + F 85 -10.5 -3.2027 | overlap 168800 168814 GGAGACAAAAGTTGC TCCAGTGGT TTA ACTACTGGA TATATAGTTTTTTTC TERM 164 169549 - 169531 - g 70 -4.6 -4.65895 | CTCTGGAGGCAAAAA TTGTCAAG GGG CTTGATAA GCTGGAAACAATCAT LI0136 169098 - 169745 + | hypothetical protein LI0137 170803 - 170015 - | putative integral membrane protein LI0138 171543 - 171157 - | hypothetical protein TERM 165 171204 - 171223 + g 70 -3.6 -4.85177 | overlap 171201 171196 171193 TTTCTATGTCTTCTT CCATAG GAAGTTGA CTATGG TTTTTCATATAATTT LI0139 172059 - 171577 - | hypothetical protein LI0140 173522 - 172266 - | glycosyltransferase TERM 166 173647 - 173683 + H 100 -15.7 -3.75292 | opp_overlap 173647 173656, overlap 173656 AATAGAGAGTCACAA TGATAAAAATAAATTAT ATT ATAATTTATTTTTATCA TTATTAATAATAAGT TERM 167 173683 - 173647 - H 100 -15.7 -3.42241 | opp_overlap 173647 173656, overlap 173656 AATAGAGAGTCACAA TGATAAAAATAAATTAT ATT ATAATTTATTTTTATCA TTATTAATAATAAGT TERM 168 173656 - 173674 + H 82 -6.2 -5.03945 | opp_overlap 173656 173647, overlap 173647 TCACAATGATAAAAA TAAATTAT ATT ATAATTTA TTTTTATCATTATTA TERM 169 173674 - 173656 - H 82 -6.2 -5.01535 | opp_overlap 173647 173656, overlap 173647 TCACAATGATAAAAA TAAATTAT ATT ATAATTTA TTTTTATCATTATTA nodB 173721 - 174680 + | xylanase/chitin deacetylase TERM 170 175342 - 175330 - f 76 -6.3 -4.61147 | opp_overlap 175329, overlap 175332 GAATATCATAGAAAA CTTCT TAT AGAAG AAGGACTTTAATTTT TERM 171 177518 - 177530 + F 81 -7.7 -4.62622 | overlap 177515 TCATATTACCTTTAA GAGCA TCT TGCTC TTTCTTTATAGTTAG TERM 172 177981 - 178009 + F 100 -12.7 -3.0395 | ATAGAATAGTATTAG GTATAGGATTTAT ATA ATAAGTCCTATAC TGTTAACACATATAT LI0142 178242 - 179129 + | hypothetical protein TERM 173 179919 - 179929 + T 70 -4 -5.12068 | overlap 179909 CTTCTTTTGTGTGTG CATA AAC TATG TTTTTATTAACTCTA LI0143 180455 - 180054 - | hypothetical protein TERM 174 180210 - 180241 + g 70 -3.8 -4.89605 | opp_overlap 180216, overlap 180211 180212 AGGGATATCATCATT ATCATACATAACAT ATGT ATGTTTTGTATGGC TTTCTTGTTTTTTTG TERM 175 180212 - 180230 + g 89 -9 -4.59081 | opp_overlap 180216, overlap 180211 180210 GGATATCATCATTAT CATACATA ACA TATGTATG TTTTGTATGGCTTTC LI0144 181446 - 180718 - | SAM-dependent methyltransferases TERM 176 181661 - 181640 - H 100 -8 -6.01187 | AATTAAATAAAAAAA TGTCCCCC AATTAA GGAGGACA CATATACTATTTTTA TERM 177 182169 - 182158 - g 70 -4.4 -4.68593 | TTGACCATGGAAAAA CAAC TTTA GTTG ATGCCTTATTTCGTC typA/bipA 182088 - 183926 + | GTP-binding protein lepA LI0146 185080 - 183980 - | translation-associated GTPase TERM 178 185059 - 185031 - G 77 -9.7 -3.0082 | overlap 185030 AACGCATTAAATAAG GTAGATTTTCCTA CAT TAGGAAGACCTAC AATACCAATTTGTAA LI0147 185352 - 185810 + | Outer membrane lipoprotein TERM 179 185880 - 185859 - T 100 -10.3 -5.95539 | opp_overlap 185859 TGTTAAATAAAAAAA CTTGTTACT ATTA AGTAACAAG TTTTTTTATAAAAAG TERM 180 185859 - 185880 + T 100 -10.3 -5.60993 | opp_overlap 185859 TGTTAAATAAAAAAA CTTGTTACT ATTA AGTAACAAG TTTTTTTATAAAAAG lon 188398 - 185906 - | ATP-dependent protease TERM 181 187482 - 187495 + g 83 -8.1 -4.41616 | TCTTTACGTACTTCT GCTGG TAAT CCAGC TTTGTTTAAGGCACT TERM 182 188066 - 188096 + g 77 -5.5 -4.84918 | opp_overlap 188065 AATAAGAGCAACAGT TCCTACGGAATAG AGATC TTCTTCTGTAGGA TTTTCTATTTGTGAA radC 189116 - 188436 - | DNA repair proteins LI0150 190188 - 189211 - | hypothetical protein LI0151 190736 - 190209 - | hypothetical protein leuS 193254 - 190747 - | leucyl-tRNA synthetase TERM 183 190952 - 190962 + g 71 -6.8 -4.08692 | TCTTTTAAAAGGGCC TGGG GAT CCCA TTTTGGCCAAGGTTC TERM 184 192778 - 192789 + g 74 -2.2 -5.47218 | GCAAGATGGACACCA GTTC TGAG GAGC TTTTTTTCGATAAAC nusB 193750 - 193265 - | transcription termination factor ribH 194233 - 193760 - | riboflavin synthase beta-chain ribA 195588 - 194320 - | GTP cyclohydrolase II ribE 196238 - 195573 - | riboflavin synthase subunit alpha ribD 197390 - 196242 - | pyrimidine reductase, riboflavin biosynthesis TERM 185 196361 - 196315 - G 75 -9 -3.40775 | opp_overlap 196314 196315, overlap 196313 ATTTTGAGGGAAATA GCATCATGTATAGTTAATGG ATTTCTA CCATTAACTATAGGTAATGC ATTGTTATCTCCTAA glyA 199164 - 197926 - | serine hydroxymethyltransferase TERM 186 198465 - 198485 + g 71 -5.3 -4.62984 | opp_overlap 198464 198467 TAGAAAGAATCATAC CACCACGAG GAC CACGTAGTG TTTTATGTGTAGTAG TERM 187 198935 - 198924 - G 77 -5.8 -4.77438 | opp_overlap 198912 198924 198923 ATTCACTATGAAAAA GTGC TTTA GCAC GTTCTATCGCTAAAT fabF/fabB 200483 - 199233 - | 3-oxoacyl-(acyl-carrier-protein) synthase TERM 188 199596 - 199608 + g 74 -3.4 -5.22794 | overlap 199606 AGTAATTTTTTCAGG TGCT ATTTG AGCA TTTTTTAATGCTTGT TERM 189 200109 - 200140 + g 76 -6.8 -4.56597 | overlap 200110 200112 CCTATTAGGTCCTAC TTCTTGAAGTTTTT CATG AAAAACTTCAATAG TTTTTAGACCACCCA TERM 190 200110 - 200139 + g 72 -8.1 -3.33744 | overlap 200109 200112 CTATTAGGTCCTACT TCTTGAAGTTTTT CATG AAAAACTTCAATA GTTTTTAGACCACCC TERM 191 200112 - 200137 + g 86 -10.7 -3.23708 | overlap 200110 200109 ATTAGGTCCTACTTC TTGAAGTTTTT CATG AAAAACTTCAA TAGTTTTTAGACCAC fabG 201646 - 200903 - | 3-oxoacyl-[acyl-carrier protein] reductase fabH 202759 - 201755 - | 3-oxoacyl-[acyl-carrier-protein] synthase III plsX 203884 - 202841 - | putative glycerol-3-phosphate acyltransferase PlsX LI0164 204643 - 204107 - | metal-binding protein TERM 192 204747 - 204787 + r 81 -7.3 -4.60797 | gap 1, opp_overlap 204747 ATAAAGCTAATATAA CTTGTTA-CTTATTTTTT TGTATT AAAAAATAAGGTAGCAAG TTTTCTGTGTGGGGA mutY 205846 - 204755 - | A/G-specific DNA glycosylase ppiB 205977 - 206483 + | peptidyl-prolyl cis-trans isomerase TERM 193 206501 - 206528 + T 100 -14.4 -3.96892 | opp_overlap 206501 TAGTTGAATAGAAAA GAGTAGTAACTA GCAC TAGTTACTACTC TTTATAGTGAGAATT TERM 194 206528 - 206501 - T 100 -14.4 -4.67608 | opp_overlap 206501 TAGTTGAATAGAAAA GAGTAGTAACTA GCAC TAGTTACTACTC TTTATAGTGAGAATT TERM 195 206608 - 206624 + T 70 -8.7 -2.62616 | TTGAACTGCCGACAC GGGGATT TTC AGTCCCC TGCTCTACCAACTGA LI0167 207434 - 206826 - | peptidyl-prolyl cis-trans isomerase LI0168 210743 - 207522 - | SNF2 family DNA/RNA helicase TERM 196 207615 - 207631 + g 74 -2.3 -5.58179 | overlap 207610 207617 AACACCACGTTTCAT TTCTTGA AGT TTAAGGA TTTTTTCTTCTACTG TERM 197 208009 - 207991 - G 75 -9 -3.39784 | opp_overlap 208005, overlap 207989 CCACCTTCAACAATA TCAAAGAT CAT ATCTTTGA AAGCTTCAAATTTCC TERM 198 209412 - 209432 + g 75 -6.9 -4.258 | overlap 209415 AAATGCAATAGCTTC TTCTGGTTC CAT GAACCATAA TTTGTTACTGCGTGG TERM 199 209415 - 209429 + g 71 -8.6 -3.12942 | overlap 209412 TGCAATAGCTTCTTC TGGTTC CAT GAACCA TAATTTGTTACTGCG TERM 200 210682 - 210664 - G 70 -8.2 -3.15699 | overlap 210662 ATTGATTGACCAACA TCCCTAAT ATA ATCAGGGA TTGAACCTTTTATAA TERM 201 210892 - 210916 + H 74 -5.1 -4.74801 | AATCAAACTTAGCTA GTTATCAAGAA AAA TTGTTGATAGC TTTTTACTCCAATTA oppA 211599 - 213256 + | ABC-type dipeptide transport system, periplasmic component TERM 202 213504 - 213491 - g 71 -5.3 -4.57569 | TCACTTGTTCAAAAA GCATA TGTT TATGC AGCAGCAGCTCATGA TERM 203 214775 - 214765 - g 79 -5.4 -5.05601 | TATTACAGATAAAAA TAGG TAT CCTA GTCGTGATTGGCTTA relA 213386 - 215581 + | guanosine polyphosphate pyrophosphohydrolases/synthetases LI0171 216006 - 215599 - | hypothetical protein LI0172 217899 - 216601 - | hypothetical protein TERM 204 216856 - 216866 + g 74 -5.4 -4.82212 | opp_overlap 216854 TGCGAATAAGGCATA TTGC TTT GCAA TTTCTTTATTATTTG TERM 205 217131 - 217145 + g 75 -10 -2.61226 | opp_overlap 217128, overlap 217128 217127 ACCATCCTAAGATTC CAGGTG TTA CACCTG TAAATTGATATTGTG TERM 206 218253 - 218206 - H 71 -6.9 -3.89041 | gap 2, overlap 218201 218208 218209 ATATATGAAACATAA CACTTATTATTCTATACTTAGTA CATG TACTAAGTATAGAATAA-AA-TA AATATAGAAGAGGTT TERM 207 218253 - 218208 - H 84 -10.1 -3.52021 | overlap 218206 218201 218209 ATATGAAACATAACA CTTATTATTCTATACTTAGTA CATG TACTAAGTATAGAATAAAATA AATATAGAAGAGGTT TERM 208 218251 - 218209 - H 100 -13.3 -2.70128 | gap 1, overlap 218206 218208 218201 TATGAAACATAACAC TTATTATTCTATACTTAGTA CATG TACTAAGTATAGAATAA-AA TAAATATAGAAGAGG TERM 209 218392 - 218422 + H 73 -2.2 -5.80727 | gap 1, opp_overlap 218392, overlap 218381 218381 AAATTAATATAAAAA TTATGTTATAATA TTTTTT TATTA-AACATAA TTTTTTATTGTTTTT LI0173 218703 - 219869 + | prophage DLP12 integrase LI0174 219859 - 220869 + | hypothetical protein TERM 210 220926 - 220949 + F 100 -15.4 -6.06723 | opp_overlap 220919 CGTATAATCTCGGAA CGTGGGTGTT GCAA AACACCCACG TTTTTTTTTGAGGAG TERM 211 221034 - 221049 + F 78 -6.8 -4.62069 | GTATTTCCGTATCCA CGTTGC AGAA GCAGCG TTTTTACCATCGCGG TERM 212 221201 - 221165 - f 72 -7.3 -3.75115 | opp_overlap 221185, overlap 221170 GCCTCAGAAAAGTAA CCCA-AGTCGCCCAGGG CATAC CCCTGGGCG-CTGCCGG AGGATTTTATGCCTT TERM 213 221195 - 221170 - f 100 -12.6 -3.29386 | gap 1, opp_overlap 221185, overlap 221165 AGAAAAGTAACCCAA GTCGCCCAGGG CATAC CCCTGGGCG-C TGCCGGAGGATTTTA TERM 214 222206 - 222181 - g 86 -11.1 -3.28712 | GCGTTTTCTGTACAA GTCCAGCGCCT TCGA AGGCGACGGAC TGTGGGCCCGCATCG LI0175 221210 - 222874 + | hyphotheical protein TERM 215 222903 - 222879 - f 77 -4.9 -5.252 | opp_overlap 222879, overlap 222880 CATTCTTATAAAAAA GCGTCTACACC CAT GCCGTAGACGG TGGTTACGCTAAAAC TERM 216 222902 - 222880 - f 79 -8.4 -3.74397 | opp_overlap 222879, overlap 222879 ATTCTTATAAAAAAG CGTCTACACC CAT GCCGTAGACG GTGGTTACGCTAAAA TERM 217 222928 - 222959 + F 100 -13 -5.42259 | opp_overlap 222933 222935, overlap 222929 TAAAACTCCTTTCCA TGAGAGAGCAGTCC ATGA GGGCAGCTCTCTCG TTTTTTTGACCATGA TERM 218 222929 - 222958 + F 100 -14.3 -3.84633 | opp_overlap 222933 222935, overlap 222928 AAAACTCCTTTCCAT GAGAGAGCAGTCC ATGA GGGCAGCTCTCTC GTTTTTTTGACCATG LI0176 222965 - 223357 + | hypothetical protein TERM 219 223681 - 223709 + F 100 -11.9 -5.28778 | opp_overlap 223681 223684 ATGTAAGAGAATGAA GAAGGAACATG AGCTTAC CATGTTCCTTC TTTTTTATCCGTCAT TERM 220 223709 - 223681 - f 100 -12.6 -3.54784 | opp_overlap 223681, overlap 223684 ATGTAAGAGAATGAA GAAGGAACATGA GCTTA CCATGTTCCTTC TTTTTTATCCGTCAT TERM 221 223706 - 223684 - f 82 -8.5 -3.89704 | opp_overlap 223681, overlap 223681 TAAGAGAATGAAGAA GGAACATGA GCTTA CCATGTTCC TTCTTTTTTATCCGT LI0177 223987 - 224532 + | hypothetical protein LI0178 224690 - 225184 + | hypothetical protein TERM 222 225660 - 225687 + T 78 -9.9 -2.75349 | opp_overlap 225660, overlap 225657 ATTTGGATGCGAAAA GAGGATCGACT TTTTAC AGCCGATCCTC TCAATTTTAGCAATT TERM 223 225687 - 225660 - T 100 -12.1 -4.13945 | opp_overlap 225660 225657 ATTTGGATGCGAAAA GAGGATCGACT TTTTAC AGCCGATCCTC TCAATTTTAGCAATT tetW 227858 - 225939 - | ribosomal protection tetracycline resistance protein TERM 224 227893 - 227930 + H 83 -11.3 -2.53995 | opp_overlap 227896 CCCAAAAGGGCGCAA AAATCCCCAGCGGCAAA TACT TTTACCGCTGGGGATCA TGACTTCGGATACAT TERM 225 227927 - 227896 - H 100 -19.6 -4.61527 | opp_overlap 227893 AAAAGGGCGCAAAAA TCCCCAGCGGCAAA TACT TTTACCGCTGGGGA TCATGACTTCGGATA TERM 226 228018 - 228065 + H 82 -10 -3.4404 | gap 1, opp_overlap 228034, overlap 228032 228034 AAAGCATTCTTAAAT TGGGTACAAAAACCA-AGCCCCT GCA AGGGGCAATTATTTTTGTGCCCA TTATCAAATTTTATT TERM 227 228034 - 228048 + H 83 -11.4 -2.57877 | opp_overlap 228034, overlap 228032 228018 GGGTACAAAAACCAA GCCCCT GCA AGGGGC AATTATTTTTGTGCC TERM 228 228048 - 228034 - H 95 -11.4 -3.88001 | opp_overlap 228034 228032 228018 GGGTACAAAAACCAA GCCCCT GCA AGGGGC AATTATTTTTGTGCC TERM 229 229154 - 229177 + G 70 -8.2 -3.24245 | opp_overlap 229124 229158, overlap 229158 CCGCAGGGACCGAAC GGAAGACAGG ATGT TCTGTCTTTC TTCAGTTCTCCGTCA LI0180 228343 - 229257 + | hypothetical protein TERM 230 229284 - 229268 - f 100 -13.7 -2.96296 | AATAACATTCATAGA CCGCGGA TCA TCCGCGG AAATAAGGAAAAGGG TERM 231 229323 - 229297 - f 100 -18 -4.62203 | opp_overlap 229291 CGGAAATAAGGAAAA GGGGGCCGCC TTTTACG GGCGGCCCCC ACGACATTGATACAG TERM 232 229482 - 229497 + G 74 -6.2 -4.56597 | opp_overlap 229481 229482 ACCTATGCCTGAAAT TTTCGA CGCG TCGAAA TTTTTAGAGGAAACC TERM 233 229559 - 229583 + G 86 -10.2 -3.70438 | opp_overlap 229562 TGTTTCTAACCCCAA GTATTACCTT GGCGG AAGGTAATAC TTTCAATGATAGTTT TERM 234 229893 - 229880 - g 73 -3.9 -5.10516 | AAAAAGTAAATAAAA CATAT AGAT ATATG CAGTCTGATATGTAC TERM 235 230230 - 230214 - g 71 -5.3 -4.57516 | opp_overlap 230214 230216 ACAGGGAAATGAAAA TATTTTT GTA AAAAATA TGTGTATCGAAAAGG LI0181 229471 - 230256 + | endonuclease I TERM 236 230371 - 230327 - g 86 -8 -4.77567 | opp_overlap 230334, overlap 230332 230334 ATTGCGACAAGAAAA CAATAGAGAGAAGTACAGGC TTACT GTCTGTACTTCTCTTTTTTA TTACTCAGGAGGGAT TERM 237 230366 - 230332 - g 83 -10.1 -3.84061 | opp_overlap 230334, overlap 230327 230334 GACAAGAAAACAATA GAGAGAAGTACAGGC TTACT GTCTGTACTTCTCTT TTTTATTACTCAGGA TERM 238 230364 - 230334 - g 93 -12.7 -3.47488 | opp_overlap 230334, overlap 230332 230327 CAAGAAAACAATAGA GAGAAGTACAGGC TTACT GTCTGTACTTCTC TTTTTTATTACTCAG TERM 239 230334 - 230364 + G 100 -14.9 -5.5112 | opp_overlap 230332 230327 230334 CAAGAAAACAATAGA GAGAAGTACAGGC TTACT GTCTGTACTTCTC TTTTTTATTACTCAG LI0182 230232 - 231092 + | putative recombination protein-phage associated TERM 240 231112 - 231142 + F 100 -11.9 -4.37886 | opp_overlap 231115 TCTTTCGACTTGTCA GAAGAGCTGACCT TCACC GGGGCAGCTCTTC TTTTATGGGAGATCG LI0183 231161 - 232363 + | hypothetical protein TERM 241 232418 - 232442 + G 87 -10 -4.01135 | opp_overlap 232418 232432 GAATGAAAAGATGAA CGCCTTGGAT AAAAC GTCCGAGGCG TTTGCTGTTATTACG LI0184 232347 - 232721 + | hypothetical protein TERM 242 232744 - 232770 + F 100 -10.9 -5.26119 | opp_overlap 232743 232744 CACTATTTCCATAAG GCCCTGTTCAT CTTGC ATGGACGGGGC TTTTCTTTTTGGGAG LI0185 232791 - 233741 + | MoxR-like ATPases LI0186 233745 - 234740 + | hypothetical protein TERM 243 235125 - 235163 + G 100 -14 -3.35934 | opp_overlap 235127 235132, overlap 235127 235132 TGAAGGATACGGAAG AAGAAAAGGCTGGGGA AAATGAC TCCCCGGCCTTTTCTG TTCTGAACTATGTGC TERM 244 235161 - 235127 - g 100 -15.1 -3.71888 | opp_overlap 235125 235127 235132, overlap 235132 AAGGATACGGAAGAA GAAAAGGCTGGGGAA AATGA CTCCCCGGCCTTTTC TGTTCTGAACTATGT TERM 245 235127 - 235161 + G 100 -16.6 -3.24633 | opp_overlap 235127 235132, overlap 235125 235132 AAGGATACGGAAGAA GAAAAGGCTGGGGA AAATGAC TCCCCGGCCTTTTC TGTTCTGAACTATGT TERM 246 235156 - 235132 - g 100 -9.2 -4.91084 | opp_overlap 235127 235125 235132, overlap 235127 TACGGAAGAAGAAAA GGCTGGGGAA AATGA CTCCCCGGCC TTTTCTGTTCTGAAC TERM 247 235132 - 235156 + G 100 -10.7 -4.73682 | opp_overlap 235132 235127, overlap 235127 235125 TACGGAAGAAGAAAA GGCTGGGGA AAATGAC TCCCCGGCC TTTTCTGTTCTGAAC TERM 248 235277 - 235253 - g 70 -4.2 -4.70266 | opp_overlap 235255 AATATTATGCAAAAA TACTGGCCCG GACTA CGCTCCAGTA TTGACGCGATCATGC LI0187 234755 - 236347 + | hypothetical protein TERM 249 236481 - 236455 - f 100 -15.2 -3.95817 | opp_overlap 236455 236446 GAAGACTGAAGGAAA GGCACTCCGG GTGGTCG CCGGAGTGCC TTTTGCATGTATTTT TERM 250 236455 - 236481 + F 100 -15.2 -4.30885 | opp_overlap 236455, overlap 236446 GAAGACTGAAGGAAA GGCACTCCGG GTGGTCG CCGGAGTGCC TTTTGCATGTATTTT TERM 251 236598 - 236569 - f 74 -2.8 -5.79595 | TTGGAAAATAAAAAA GGACAAGTCACA AACTAA TGCTTCTTGTCC TAAAAAATTCAATTA TERM 252 238663 - 238646 - g 73 -4.2 -5.00642 | overlap 238648 GAAGCTAGAGAAAAA TGTCAA GAACTA TTGACA AATAATCTTGATACG ftsH 236969 - 238876 + | ATP-dependent Zn proteases TERM 253 238955 - 238979 + G 95 -8.6 -5.2015 | opp_overlap 238954 238955 ATTGGATAGTTAAAG GGGGTAGG CAAATAAAT CCTACCCC TTTTTGTATTATTGG TERM 254 239094 - 239078 - g 75 -5.1 -4.84146 | AGCATACAAAACAAA TGCTTCA ATC TGGAGCA CAAGTTATTGATATA folP 238888 - 239775 + | dihydropteroate synthase LI0190 239839 - 240579 + | hypothetical protein LI0191 240772 - 241494 + | hypothetical protein LI0192 241522 - 242877 + | phosphomannomutase galU 242878 - 243798 + | UDP-glucose pyrophosphorylase TERM 255 243793 - 243813 + F 80 -4.1 -5.50774 | opp_overlap 243793, overlap 243796 CACATTTCAGAAAAA CAATAATGA ATT TCATTATTA TTTTTCTTTATTCTC TERM 256 243813 - 243793 - f 79 -6.3 -4.8667 | opp_overlap 243793 243796 CACATTTCAGAAAAA CAATAATGA ATT TCATTATTA TTTTTCTTTATTCTC TERM 257 243796 - 243810 + F 77 -5.8 -4.78345 | opp_overlap 243793, overlap 243793 ATTTCAGAAAAACAA TAATGA ATT TCATTA TTATTTTTCTTTATT TERM 258 245753 - 245729 - g 81 -10.8 -2.94218 | opp_overlap 245732, overlap 245715 245744 ATTCCTGACTATAGA GCAGCTGAAA AAACA TTCCAGCTGC TTACACAGTCAGCAG priA 243833 - 246211 + | primosomal protein N' TERM 259 246327 - 246347 + F 77 -2 -5.89921 | opp_overlap 246323 246327, overlap 246327 GAAATGCATAATAAC TATTTAGA AAATA TTTAAATA TTTTTTTATTATCAT TERM 260 247558 - 247546 - g 74 -2 -5.40072 | opp_overlap 247556 CTTTTTTCAAAAAAA TACT CATTT AGTA GAGTTCTACCATTTT TERM 261 247654 - 247644 - g 84 -4 -5.68039 | AAAGTGATAAAAAAA TTGT TAC ACAA CCTACTACTACAATA LI0195 247238 - 247885 + | SAM-dependent methyltransferases TERM 262 249055 - 249067 + G 89 -6.3 -5.626 | AGTTCAGCAGGAGTA TTGCT TAC AGCAA TTTTTTTATCCAATA LI0196 247882 - 249495 + | putative transport protein LI0197 250242 - 249535 - | endo-1,4-beta-xylanase LI0198 250963 - 250367 - | hypothetical protein TERM 263 250816 - 250793 - G 70 -4.6 -4.69962 | TACATCAAAAAATAA GGTAATAAAC CCAA GTTTTCTACC ACAAATTCTTGTTAT LI0199 253005 - 250984 - | exoribonuclease R purH 254339 - 253065 - | AICAR transformylase/IMP cyclohydrolase PurH TERM 264 253659 - 253645 - G 83 -7.2 -4.74215 | ACACGATTAAGAAAA GATTCT TGA AGAATC AGTCCACCATCACAA TERM 265 254222 - 254236 + g 91 -2.8 -6.06529 | ATCCTTTTATTTCCC CATTGA TAT TCCATG TTTTTTTTGTATATG LI0201 254566 - 254889 + | hypothetical protein purA 255142 - 256428 + | adenylosuccinate synthetase trmU 256593 - 257651 + | tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase TERM 266 258739 - 258724 - g 71 -7.6 -3.54741 | opp_overlap 258724 258722 258716 GACCATTTTCTGAAA TTTGGG ATGA CCCAAA TATTGAATTGCTTCA LI0204 257733 - 258917 + | Fe-S oxidoreductases TERM 267 259107 - 259131 + G 76 -6.5 -4.54297 | overlap 259108 TCCAAGAAACTAGAT TGCATAGTCAA GAC TTGATTATGCC TTATTTTGTTGTTGA TERM 268 259108 - 259130 + G 79 -10 -3.30952 | overlap 259107 CCAAGAAACTAGATT GCATAGTCAA GAC TTGATTATGC CTTATTTTGTTGTTG hemB 259031 - 260029 + | delta-aminolevulinic acid dehydratase LI0206 260014 - 261327 + | Fe-S oxidoreductases nirD 261332 - 261784 + | transcriptional regulators TERM 269 261818 - 261839 + F 100 -9.5 -5.67063 | opp_overlap 261818 261817 CAATAAATATAAAGG TGCTCTCTA GTAG TAGGGAGCA TTTTTTTATGATACA LI0208 261947 - 262936 + | hypothetical protein LI0209 263206 - 263820 + | hypothetical protein TERM 270 264095 - 264124 + T 90 -6.7 -5.252 | opp_overlap 264114, overlap 264096 264115 GTAACAAGCCTATAT CTTTTAAAAAATG TATA CATTTTTTAAAAA TTTTTTCTAAAAATA TERM 271 264096 - 264123 + T 85 -10.2 -3.74397 | opp_overlap 264114, overlap 264095 264115 TAACAAGCCTATATC TTTTAAAAAATG TATA CATTTTTTAAAA ATTTTTTCTAAAAAT fliS 264875 - 264303 - | flagellin-specific chaperone FliS fliD 266991 - 264907 - | flagellar capping protein TERM 272 265045 - 265057 + g 80 -6.3 -4.7373 | TGTTTCTTTTTCTAT TCTTG TCT CAAGA TTTTTCATAACATCC TERM 273 267769 - 267750 - g 76 -3.6 -5.39221 | opp_overlap 267753, overlap 267753 AGAAGAATCAAAAAA TATTGTTG GTTA CAACATTA ATGGCTCAATAATAG TERM 274 268943 - 268925 - g 73 -4.6 -5.02074 | opp_overlap 268942 CTAGGCCTGAAAAAA GCATAG GTTCTGA CTATGC ATGGGAACTTGCTAC thrS 267658 - 269586 + | threonyl-tRNA synthetase infC 269654 - 270130 + | translation initiation factor IF-3 TERM 275 270247 - 270231 - f 74 -7.3 -3.87792 | opp_overlap 270231, overlap 270229 270226 AAACTAAAAACAAGA CGTTCTG CAG CAAAACG TTTTTCTTCTACAGG TERM 276 270231 - 270247 + F 81 -5.1 -5.18726 | opp_overlap 270231 270229 270226 AAACTAAAAACAAGA CGTTCTG CAG CAAAACG TTTTTCTTCTACAGG rplT 270500 - 270853 + | 50S ribosomal protein L20 TERM 277 271803 - 271825 + G 72 -4.8 -4.72846 | GATTGAAATCCTTGG CTGTGGGATG GTA CATCCAAAAG TTTTTGAGTCTGTAG pheS 270937 - 271974 + | phenylalanyl-tRNA synthetase alpha subunit TERM 278 272294 - 272263 - g 78 -10.3 -2.71712 | opp_overlap 272261 272263, overlap 272262 TGCGGTGCTCCAAAC GTAGCTACAGG TCAAAAAGTT CCTGTAGCTAC TATTGGTACTACTAT TERM 279 272263 - 272294 + G 83 -10.3 -3.1829 | opp_overlap 272263 272262, overlap 272261 TGCGGTGCTCCAAAC GTAGCTACAGG TCAAAAAGTT CCTGTAGCTAC TATTGGTACTACTAT pheT 272014 - 274425 + | phenylalanyl-tRNA synthetase beta subunit LI0217 274466 - 274882 + | transcriptional regulator rpe 275097 - 275564 + | Pentose-5-phosphate-3-epimerase TERM 280 276665 - 276654 - g 79 -4.4 -5.31091 | overlap 276657 TAGAACAAAATAAAA TAGC TATA GCTA CTCGAGTAGCTTCAA tkt 275627 - 277594 + | transketolase TERM 281 278335 - 278348 + G 82 -3.1 -5.67967 | AAGCTAATCTCTCTA CTTCA GATA TGGAG TTTTTTTGTAATAAT trmD 277821 - 278945 + | tRNA-(guanine-N1)-methyltransferase rplS 278981 - 279328 + | 50S ribosomal protein L19 TERM 282 279358 - 279373 + F 88 -6.1 -5.42198 | opp_overlap 279356 279358 TTAAATAAACATAGA GGGAC ATTAAA GTCCC TTTTCTTTTTTGGAG TERM 283 279434 - 279416 - g 70 -3.9 -4.99665 | overlap 279429 CAAAAAAAATTAAAA CAACAAC AGATA GTTGTTA AACAAAGCTTACCAA rplS 279395 - 280069 + | ribonuclease HII LI0223 280089 - 280487 + | endonuclease LI0224 280429 - 281259 + | methyltransferases smpB 281262 - 281729 + | SsrA-binding protein TERM 284 282764 - 282776 + G 71 -7.7 -3.63515 | ACAACAAAAAGTTTT GGAGA TCG TCTCC TTATTGAAGATGCAC TERM 285 282897 - 282887 - g 83 -6.8 -4.84359 | opp_overlap 282887 GCAGGGTTAGAAAAA CCAG ATA CTGG TGAGTTTCTTATAGG yjjK 281750 - 283432 + | putative ABC transporter ATP-binding protein fabD 284482 - 283562 - | (acyl-carrier-protein) S-malonyltransferase glpX 285644 - 284607 - | fructose 1,6-bisphosphatase II TERM 286 284942 - 284956 + g 79 -10 -3.29649 | opp_overlap 284933 CCGAAAGAACACCTT CAGGAG TTC CTCCTG TTCCTATCATAAGAT TERM 287 285302 - 285283 - G 83 -10.8 -3.08015 | CCAACTACTGCAATA GCATTTGG TCTA CCAAATGC AAGGAGATTTGTTCC TERM 288 285470 - 285458 - G 74 -5.5 -4.73614 | opp_overlap 285464 285466 GATTATTAAAAGAAA GACGC ATA GCATC AACTGCTGCTTTATC TERM 289 285886 - 285872 - g 85 -4.2 -5.67063 | TGTACTATAAAAAAA CTAGGT TAT ACCTGG CCTAAAAAAGCAGTT TERM 290 286024 - 286005 - g 77 -5 -5.02476 | opp_overlap 286019 ATATTGCTGAAAAAA TTGCTGAA AAGT TGCAGCAA GAAAGTACCTCATTT argS 285821 - 287473 + | arginyl-tRNA synthetase TERM 291 287936 - 287909 - g 91 -2.2 -6.23545 | gap 1, overlap 287911 CTTAAACAAAAAAAA GATATATCTTCTG AAA CAAAAAATATA-C AAAAAAATATTAATA TERM 292 287935 - 287911 - g 77 -5.9 -4.74858 | overlap 287909 TAAACAAAAAAAAGA TATATCTTCTG AAA CAAAAAATATA CAAAAAAATATTAAT LI0230 287480 - 288256 + | hypothetical protein LI0231 288273 - 289073 + | ABC-type transport system involved in resistance to organic solvents, permease component LI0232 289086 - 289916 + | ABC-type transport system involved in resistance to organic solvents, ATPase component LI0233 289932 - 290375 + | ABC-type transport system involved in resistance to organic solvents, periplasmic component LI0234 290380 - 291030 + | ABC-type transport system involved in resistance to organic solvents, auxiliary component TERM 293 291057 - 291067 + G 76 -4 -5.22006 | opp_overlap 291057 ACAACTACGAACCTA TGAT TTT ATCA TTTTTATTATAATCA TERM 294 291070 - 291098 + G 100 -7.7 -5.95166 | opp_overlap 291080, overlap 291072 TATGATTTTATCATT TTTATTATAATCA TAA TGATTATAATACA TTTTTTTTGCTTACC TERM 295 291072 - 291096 + G 80 -10.3 -3.07657 | opp_overlap 291080, overlap 291070 TGATTTTATCATTTT TATTATAATCA TAA TGATTATAATA CATTTTTTTTGCTTA LI0235 291031 - 291927 + | surface lipoprotein mutS 295079 - 292398 - | DNA mismatch repair protein TERM 296 292505 - 292532 + g 73 -7.1 -4.04141 | opp_overlap 292505 TTAATAAGGTGACAA CAGGATGTTCA ACTACC TTAACATCCTG TTTGCTTAGTTCTTC TERM 297 294046 - 294058 + g 71 -6.3 -4.14158 | GCTTTCAATGCGTCT TGAAG TTT CTTCA TATTTTCTTTATATA TERM 298 294230 - 294246 + g 91 -4.5 -5.86465 | opp_overlap 294227, overlap 294232 TTTTTCCATTAACTC TTTTGAA AAG TTCAAGA TTTTTTTCTGTTATT LI0237 296034 - 295534 - | diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases TERM 299 296014 - 296039 + g 91 -4.1 -5.95449 | gap 1, opp_overlap 296018, overlap 296018 TCGCCAAGGAGCCCA TAGAGGTTGCAT TAT ATGCATCCT-TA TTTTTTATTTTATTT TERM 300 296018 - 296036 + g 88 -7.4 -4.94109 | opp_overlap 296018, overlap 296014 CAAGGAGCCCATAGA GGTTGCAT TAT ATGCATCC TTATTTTTTATTTTA cca 297827 - 296154 - | polyA polymerase family protein LI0239 298914 - 297994 - | site-specific recombinase TERM 301 298682 - 298667 - G 86 -4.8 -5.65513 | opp_overlap 298659 298667 298676, overlap 298659 CACCAATGAAAAAAA TTTCTT ATAG AAGAAA GTCTTCTTGCTAGTG folk 299096 - 299647 + | 7,8-dihydro-6-hydroxymethylpterin- pyrophosphokinase uvrB 300171 - 302201 + | excinuclease ABC subunit B lig 302221 - 304269 + | NAD-dependent DNA ligase dapB 304286 - 305062 + | dihydrodipicolinate reductase nadE 305063 - 306640 + | NH(3)-dependent NAD(+) synthetase TERM 302 306707 - 306670 - T 100 -18.9 -4.62783 | opp_overlap 306670 306683 GATGTATCTTAAAAA TAACAACAGCATTTTTA TTAA TAAAAATGCTGTTGTTA TTTTTAATAATAAAC TERM 303 306670 - 306707 + T 100 -18.9 -4.77036 | opp_overlap 306670, overlap 306683 GATGTATCTTAAAAA TAACAACAGCATTTTTA TTAA TAAAAATGCTGTTGTTA TTTTTAATAATAAAC hypB 307415 - 306735 - | hydrogenase accessory protein HypB hypA 307782 - 307426 - | zinc finger protein TERM 304 308709 - 308726 + G 73 -7.1 -4.04209 | opp_overlap 308708 AAGCAGAACAACACT TAGAAAG AGCA CTTTCTA TTTCTCCTAATTTGA LI0247 308027 - 308794 + | hypothetical protein LI0248 308869 - 309519 + | hypothetical protein recN 311150 - 309567 - | ATPase involved in DNA repair TERM 305 310107 - 310124 + g 71 -3.5 -5.17353 | gap 1, overlap 310107 310108 TAATTCATAAATTTT C-TCAAGT ATT ACTTGAAG TTTTTTGATCAATAT TERM 306 310134 - 310148 + g 77 -5.8 -4.70659 | TTGAAGTTTTTTGAT CAATAT AGT ATATTG TTTTTCAATCTGGCG TERM 307 310202 - 310192 - G 73 -4 -5.12617 | overlap 310181 CAACTATCTAAAAAA GATA ACT TATC CTCAATCTCTTCTTT oppC 312023 - 311205 - | ABC-type dipeptide/oligopeptide/nickel transport systems, permease components oppB 313036 - 312032 - | ABC-type dipeptide/oligopeptide/nickel transport systems, permease components LI0252 313712 - 313191 - | hypothetical protein LI0253 314339 - 313725 - | hypothetical protein TERM 308 313992 - 314013 + g 70 -4.5 -4.71061 | opp_overlap 314009, overlap 313993 TTCATGTAACTCTGA CTTTCTTTC CTGA GAAAGAAAC TTTTTCCCTGTGAGT TERM 309 313993 - 314012 + g 72 -8 -3.41913 | opp_overlap 314009, overlap 313992 TCATGTAACTCTGAC TTTCTTTC CTGA GAAAGAAA CTTTTTCCCTGTGAG TERM 310 315179 - 315167 - g 83 -7.7 -4.71791 | opp_overlap 315167 AGAGGAACAAATAAA CCCTA TGG TAGGG ATCCATATGGTTCAT LI0254 314561 - 315688 + | hypothetical protein LI0255 316236 - 315691 - | hypothetical protein TERM 311 315750 - 315796 + g 100 -9.1 -5.252 | gap 1, opp_overlap 315753 315755 AAATTGTCTTTCTAA GAATACTATTGAGGGAATATGT ATAA ATA-ATTCCTTCAATAGCATTC TTTTTTATAAACGTC TERM 312 315832 - 315821 - G 77 -3 -5.41746 | opp_overlap 315821, overlap 315829 AACGTCTGAAAAAAA GAAA AACC TTTC TTTGCAGTACAAAAA LI0256 317029 - 316238 - | hypothetical protein TERM 313 316872 - 316856 - G 74 -5.9 -4.52047 | opp_overlap 316856 316857, overlap 316857 CACTATATTAGAAAA CTCTTCA TAT TGAAGAA TCATTTTTACATTAT TERM 314 317630 - 317607 - g 71 -5.4 -4.5954 | opp_overlap 317606 317609, overlap 317610 CTAGAGTAGATAAAA CATTACTAAA ACAA TTTAGTAGTG GTATTACAGCATTAT TERM 315 318283 - 318273 - g 71 -6.8 -4.2535 | ATATTATATGTAAAA TGGG GTT CCCA GGATACTTTCTAATT TERM 316 319493 - 319524 + G 76 -9.6 -2.85061 | opp_overlap 319492 319491 TTAATGGAAAAATTT GCTGAATATGGTTT TAAC AAATCACATTCAGC TGCTTATGCACTTAT dnaE 317243 - 320752 + | DNA polymerase III, alpha subunit LI0258 320772 - 321152 + | F0F1-type ATP synthase, subunit c LI0259 321553 - 321305 - | hypothetical protein TERM 317 322030 - 322050 + G 77 -4.8 -5.1634 | TTTTTGGTGCTCAAT TAAGGACA CGTCT TGTTCTTA TTTTTGTATCTTTAT ntrY 321744 - 323993 + | Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation TERM 318 324046 - 324000 - T 100 -11.3 -4.88163 | gap 1, opp_overlap 324005 324007 324009 324013, overlap 324003 324005 324007 TCAATATAAAATAAA TAATATATAGAAAGCCTCTTAA TAAA TTAAGAGGCTTTCTAT-CATTG ACTTCATTCTATAGA TERM 319 324043 - 324003 - T 100 -13 -4.49673 | gap 1, opp_overlap 324005 324007 324009 324013, overlap 324000 324005 324007 ATATAAAATAAATAA TATATAGAAAGCCTCTTAA TAAA TTAAGAGGCTTTCTAT-CA TTGACTTCATTCTAT TERM 320 324042 - 324005 - T 100 -15.9 -3.82187 | opp_overlap 324005 324007 324009 324013, overlap 324003 324000 324007 ATAAAATAAATAATA TATAGAAAGCCTCTTAA TAAA TTAAGAGGCTTTCTATC ATTGACTTCATTCTA TERM 321 324005 - 324043 + T 100 -14.3 -3.25758 | gap 1, opp_overlap 324005 324003 324000 324007, overlap 324007 324009 324013 ATAAAATAAATAATA T-ATAGAAAGCCTCTTAA TAAA TTAAGAGGCTTTCTATCA TTGACTTCATTCTAT TERM 322 324040 - 324007 - T 100 -18.5 -3.45745 | opp_overlap 324005 324007 324009 324013, overlap 324005 324003 324000 AAAATAAATAATATA TAGAAAGCCTCTTAA TAAA TTAAGAGGCTTTCTA TCATTGACTTCATTC TERM 323 324007 - 324040 + T 100 -18.5 -2.80398 | opp_overlap 324007 324005 324003 324000, overlap 324005 324009 324013 AAAATAAATAATATA TAGAAAGCCTCTTAA TAAA TTAAGAGGCTTTCTA TCATTGACTTCATTC TERM 324 324009 - 324038 + T 100 -16.7 -2.94258 | opp_overlap 324007 324005 324003 324000, overlap 324007 324005 324013 AATAAATAATATATA GAAAGCCTCTTAA TAAA TTAAGAGGCTTTC TATCATTGACTTCAT TERM 325 324013 - 324034 + T 100 -11.7 -4.13872 | opp_overlap 324007 324005 324003 324000, overlap 324009 324007 324005 AATAATATATAGAAA GCCTCTTAA TAAA TTAAGAGGC TTTCTATCATTGACT gad 325572 - 324064 - | glutamate decarboxylase isozyme TERM 326 324774 - 324792 + g 83 -7.4 -4.72617 | opp_overlap 324777, overlap 324777 TTGCTGCATCAACAT GAATGGGA ATA TCCCATCC TTTCTTCTTTTGTAA TERM 327 325526 - 325538 + g 91 -4.8 -5.86061 | CCTCTTTTTGTTCCA TGCC CCACA GGCA TTTTTTTTACTACAG TERM 328 325647 - 325659 + r 86 -6.3 -5.2112 | overlap 325651 325652 325654 CTTGTGATCGCTGTT CTTTC CAT GAAAG TTTTTTCATGCTATT LI0262 327084 - 325627 - | amino acid transporters TERM 329 328137 - 328106 - g 95 -5.8 -6.08342 | opp_overlap 328109 GAAGAAATAAAAAAA CATGCAGATACAGC TATT GCTATTGCTGCACG GCCAGTTTTAGGTAA LI0263 327353 - 328624 + | putative amino acid-amine transport protein TERM 330 328891 - 328904 + F 80 -8.1 -4.09739 | GTGAGTTTTCTCGTT CTGGC TTTA GCCAG TTTTACCCACCTTAA rho 328991 - 330241 + | transcription termination factor Rho TERM 331 330324 - 330345 + T 88 -5.9 -5.37593 | opp_overlap 330311 330324 ACTAAACACAAAAAA GTCTGTTAA CAAC TAAACAGAC TTTTTTAATTTAAAC TERM 332 330345 - 330324 - T 90 -5.9 -5.5762 | opp_overlap 330324, overlap 330311 ACTAAACACAAAAAA GTCTGTTAA CAAC TAAACAGAC TTTTTTAATTTAAAC LI0265 331534 - 330371 - | cysteine sulfinate desulfinase/cysteine desulfurase iscU 332373 - 331531 - | NifU homolog involved in Fe-S cluster formation TERM 333 331723 - 331745 + g 100 -12.2 -5.23016 | TAATACCGGATTTAT TTCTTCATCT AAA AGATGAAGAA TTTTTTGCATTCTTT TERM 334 332218 - 332206 - G 74 -6.3 -4.29929 | opp_overlap 332205 ACCAAAGGTAAGAAA TGAAG CAT CTTCA ATAACTTCATTTTCA TERM 335 332894 - 332931 + r 100 -18.9 -3.25719 | opp_overlap 332894 GTTTATTATATTAAA GTTATACCTATAGTAAA AATT TTTACTATAGGTATAAC TTAGTGCTGTAATAA TERM 336 332931 - 332894 - R 100 -18.9 -3.86202 | opp_overlap 332894 GTTTATTATATTAAA GTTATACCTATAGTAAA AATT TTTACTATAGGTATAAC TTAGTGCTGTAATAA LI0267 333689 - 333321 - | hypothetical protein ruvC 334312 - 333806 - | Holliday junction resolvasome, endonuclease subunit yebC 335124 - 334384 - | hypothetical protein ygcA 335775 - 335173 - | 23S rRNA methylase TERM 337 336143 - 336128 - g 75 -4.7 -4.85782 | overlap 336107 336139 TGTTTGAAAAACAAA TGCCA GAAGAA TGGCA TAAATGTATTCCAGC TERM 338 336824 - 336813 - g 71 -3 -5.06414 | opp_overlap 336813 CTTCCCTAACAAAAA GAAA TTTT TTTC TGGGTTACAACTACC LI0271 335866 - 337446 + | hypothetical protein LI0272 337458 - 338414 + | hypothetical protein TERM 339 338883 - 338852 - g 70 -2.4 -5.30616 | gap 1, opp_overlap 338862, overlap 338854 GGAGCTAAAGAAAAA CATGTACCTATTATT GAA AATAAT-GGTTCAGG TTGCAAGGTAACTGT LI0273 338687 - 339097 + | desulfoferrodoxin TERM 340 339304 - 339355 + F 100 -15.6 -4.79223 | gap 1, opp_overlap 339309 339314, overlap 339314 339317 TTTTCTCCTATAGAC TAAAATTAAAGAATCCATGGGAATG TAT CATTCCCATGGATTCTT-AATAATA TTTTTACTAATGTAA TERM 341 339350 - 339309 - f 100 -19.9 -4.39166 | gap 1, opp_overlap 339304 339314 339317, overlap 339314 TCCTATAGACTAAAA TTAAAGAATCCATGGGAATG TAT CATTCCCATGGATTCTT-AA TAATATTTTTACTAA TERM 342 339314 - 339346 + F 100 -22.3 -3.34414 | opp_overlap 339309 339314, overlap 339304 339317 TAGACTAAAATTAAA GAATCCATGGGAATG TAT CATTCCCATGGATTC TTAATAATATTTTTA TERM 343 339346 - 339314 - f 100 -22.3 -4.25388 | opp_overlap 339314 339304 339317, overlap 339309 TAGACTAAAATTAAA GAATCCATGGGAATG TAT CATTCCCATGGATTC TTAATAATATTTTTA TERM 344 339317 - 339343 + F 100 -18.2 -3.78156 | opp_overlap 339314 339309, overlap 339314 339304 ACTAAAATTAAAGAA TCCATGGGAATG TAT CATTCCCATGGA TTCTTAATAATATTT TERM 345 340354 - 340343 - g 85 -4.4 -5.76633 | opp_overlap 340343, overlap 340344 TGATATACAAAAAAA TCAC CATA GTGA TGTTATGACTGCTTT TERM 346 340575 - 340546 - g 81 -10.1 -3.42147 | opp_overlap 340571 TTCAAGCAATATTAA GTTCAATTGGTGT AGAA ACACCATCTGAAC CTCTAAGAGGGACAT LI0274 339468 - 340676 + | uncharacterized flavoproteins TERM 347 340837 - 340858 + G 95 -6.5 -5.89947 | GTTGTTATGCTGTCA CGGCTCCAG TTTG CTGTAGCTG TTTTTTTTCACTTTA cyoB 340816 - 342117 + | cytochrome bd-type quinol oxidase, subunit 1 cyoA 342150 - 343178 + | cytochrome bd-type quinol oxidase, subunit 2 TERM 348 343241 - 343183 - T 100 -16.7 -3.7331 | gap 1, opp_overlap 343202, overlap 343188 343202 ATGCTTATTAAAAGA TTATATAACTAGAAAAAAAGGCTGTTTA TATA CAAACAGCCTTTTTTTCTAATCA-ATAA AAGTATTGCATATGA TERM 349 343237 - 343188 - T 100 -19.1 -3.02856 | opp_overlap 343202, overlap 343183 343202 TATTAAAAGATTATA TAACTAGAAAAAAAGGCTGTTTA TATA CAAACAGCCTTTTTTTCTAATCA ATAAAAGTATTGCAT TERM 350 343223 - 343202 - T 100 -9.5 -5.73339 | opp_overlap 343202, overlap 343188 343183 ATAACTAGAAAAAAA GGCTGTTTA TATA CAAACAGCC TTTTTTTCTAATCAA TERM 351 343202 - 343223 + T 100 -8.8 -5.67063 | opp_overlap 343188 343183 343202 ATAACTAGAAAAAAA GGCTGTTT ATATAC AAACAGCC TTTTTTTCTAATCAA LI0277 343829 - 343350 - | hypothetical protein TERM 352 344376 - 344356 - g 76 -7.6 -3.92522 | CTGTAATGGGAGAAA CTACTGAC AACTG GTCAGCAG CTAATAAAAAAAATC TERM 353 344423 - 344404 - g 81 -9.4 -3.89524 | ATCTTATGGGACAAA GAGTTCTT GTAC AAGAACTC CAATCTGAGGCAGGA TERM 354 345931 - 345941 + G 71 -5.4 -4.62872 | overlap 345904 GTATTAATATGATCA TGCA AAC TGCA TTTTTCAAACTTGCT porA 344241 - 347804 + | pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, gamma subunit TERM 355 347974 - 347996 + G 72 -4.8 -4.67011 | TGATGCAGCTACTCA TGCGACACAT AAG AAGTGTAGCA TTTTTCCGTCCAATT pta 347892 - 350012 + | phosphate acetyltransferase ackA 350112 - 351326 + | acetate kinase miaA 352262 - 351351 - | tRNA delta(2)-isopentenylpyrophosphate transferase kdtB 352827 - 352309 - | phosphopantetheine adenylyltransferase LI0283 353375 - 352803 - | N6-adenine-specific methylase TERM 356 353431 - 353403 - R 83 -11.3 -2.6062 | opp_overlap 353407 353408, overlap 353408 TTTACTATATAATAT TAAAACTATAGTA ACC TACTATAGCTTTA GGATTAACTTGGAAT TERM 357 353426 - 353408 - R 86 -9 -4.48263 | opp_overlap 353408 353407, overlap 353403 TATATAATATTAAAA CTATAGTA ACC TACTATAG CTTTAGGATTAACTT TERM 358 353408 - 353426 + r 73 -9 -2.80236 | opp_overlap 353403 353408, overlap 353407 TATATAATATTAAAA CTATAGTA ACC TACTATAG CTTTAGGATTAACTT LI0284 355117 - 353516 - | RNA processing exonuclease TERM 359 354739 - 354751 + g 71 -3.3 -5.10064 | opp_overlap 354739 CCTCAACTGTATAAA GTGGT AAT ACCTC TTTTTCTATCTTACC TERM 360 355220 - 355198 - R 72 -6.4 -4.21945 | AGCAATACATACAAA GATTACTTCT CTA ATAAGTAATC ATGAATAGCAATAAT LI0285 356610 - 355243 - | cell wall-associated hydrolases (invasion-associated proteins) TERM 361 355618 - 355608 - G 77 -5.4 -4.97402 | opp_overlap 355608 CAAAAGGGATAAAAA GATC TGA GATC ATTTCCGAGCAATCT TERM 362 356121 - 356102 - G 72 -5 -4.72729 | opp_overlap 356102 356107, overlap 356096 356097 TAATCAAAAGGAAAA CCTTCTCC TGCT AAAGAAGG ATTTCTGAAAAAAGG LI0286 358055 - 356715 - | cell wall-associated hydrolases (invasion-associated proteins) TERM 363 358007 - 357987 - G 75 -6.9 -4.12405 | AGAAACACAATTAAA TGTCTTACA ACC TGTGAGACA AAGAAATAAACTTAT recD 360267 - 358069 - | exonuclease V subunit alpha TERM 364 360054 - 360014 - G 84 -12.2 -2.75064 | gap 1, opp_overlap 360024, overlap 360018 360024 CCTTCTACTGAAGCA GGAAGACGAATTTCAAATG TTGA CATCTGAAATT-GTCTCCC AAAACGTGTATTATT TERM 365 360050 - 360018 - G 70 -8 -3.2827 | gap 1, opp_overlap 360024, overlap 360014 360024 CTACTGAAGCAGGAA GACGAATTTCAAATG TTGA CATCTGAAATT-GTC TCCCAAAACGTGTAT TERM 366 360748 - 360767 + H 72 -8 -3.4678 | opp_overlap 360751 ATACACTTATTTACA TTAGACTA GATA TAGTCTAA TTCTAATATAGAGCT LI0288 361133 - 362386 + | PAP2 superfamily protein LI0289 363340 - 362504 - | Pirin-related protein TERM 367 363522 - 363473 - R 100 -12.7 -4.90917 | opp_overlap 363453 363473 363476 363520, overlap 363453 363451 363505 363520 AAATTTAATTAAAAA TTTTTATATTAGTTATTATGTTA CATG TAACATAATAACTAATATAGTAA TTATTAATGTAAAAA TERM 368 363473 - 363522 + r 100 -14.9 -3.7732 | opp_overlap 363453 363451 363473 363505 363520, overlap 363453 363476 363520 AAATTTAATTAAAAA TTTTTATATTAGTTATTATGTTA CATG TAACATAATAACTAATATAGTAA TTATTAATGTAAAAA TERM 369 363476 - 363519 + r 100 -16.6 -2.97707 | opp_overlap 363453 363451 363473 363505, overlap 363453 363473 TTTAATTAAAAATTT TTATATTAGTTATTATGTTA CATG TAACATAATAACTAATATAG TAATTATTAATGTAA LI0290 364893 - 363544 - | hypothetical protein TERM 370 365560 - 365529 - R 93 -12 -3.56541 | AGTAGTATTATACAA CTTATTATAAAAAA AAAC TTTTTTATAATAAG GGTTAAAAATTCTTA LI0291 367550 - 365970 - | hypothetical protein TERM 371 368298 - 368285 - g 79 -3.9 -5.43329 | AAAAATAAAACAAAA GTATT ATCC AATAC TTACAAAAAAAGAAA LI0292 367971 - 368636 + | Svh TERM 372 368838 - 368807 - T 75 -3 -5.61824 | opp_overlap 368807 CAAAACTCAAAAAAA TCTGGTTGAGTTGT TTAA ACAACTCACGTAGA ATTCTATTTCTTAAC TERM 373 369076 - 369064 - T 72 -6.3 -4.27316 | opp_overlap 369064 369063 TTGGCTAAGTTAAAA TGCAT TAT ATGCA ATTAATAATAAAACT TERM 374 369099 - 369124 + T 73 -8.3 -3.25102 | opp_overlap 369098, overlap 369097 ATAAAACTAAAACTT CCTCTCTCTAG TACG CTAGAGGCAGG TGTTATGGCTGAGGT TERM 375 369587 - 369542 - T 82 -10.1 -3.41878 | gap 1, opp_overlap 369542 369537 369545 369548, overlap 369545 369548 GTGGTTAACTTATAA TAACAAGCTAGG-ATTACAC TTAAACT ATGTAATTCCTAGCTTGCTA TATGTTTAAGATACT TERM 376 369584 - 369545 - T 86 -9.6 -3.84808 | gap 1, opp_overlap 369545 369542 369537 369548, overlap 369542 369548 GTTAACTTATAATAA CAAGCTAGG-ATTACAC TTAAACT ATGTAATTCCTAGCTTG CTATATGTTTAAGAT TERM 377 369545 - 369584 + T 72 -8.9 -2.51089 | gap 1, opp_overlap 369542 369545 369548, overlap 369542 369537 369548 GTTAACTTATAATAA CAAGCTAGG-ATTACA CTTAAACTA TGTAATTCCTAGCTTG CTATATGTTTAAGAT fumB 370143 - 369577 - | fumarate hydratase fumA 371014 - 370169 - | fumarate hydratase TERM 378 370867 - 370881 + g 73 -7.2 -4.00038 | opp_overlap 370866 370867, overlap 370858 CATTATTAACAAGAT GTTGTA GTA TACAAC TTTCTAGTGGTGATG LI0295 371884 - 371279 - | hypothetical protein purM 373374 - 372325 - | phosphoribosylaminoimidazole synthetase LI0297 373444 - 373821 + | hypothetical protein TERM 379 374448 - 374437 - g 74 -3 -5.24129 | GGCTTTGATAAAAAA TTGT TTAC ACAA CTTCAAAGTGGACTT LI0298 373843 - 374799 + | hypothetical protein TERM 380 374943 - 374969 + T 79 -8.8 -3.65581 | TAACACCTTTTTTAG CTGCTTTATCTA TAG TAGATGTAGCAG TTATTAAAAGTTGCT glyS 377307 - 375220 - | glycyl-tRNA synthetase, beta subunit TERM 381 376391 - 376350 - G 79 -8.1 -4.07568 | gap 1 GTCTTGCTTGTAAAA CTCTCTCCCAACCTTGCTTC ACT AATGCAAGATCAGGAG-GAG TCATATTTAACACTG TERM 382 377251 - 377225 - G 76 -4.4 -5.20154 | overlap 377226 AGAGAATCTAAAAAA CGAACTCCAAGC TCT GATTGAAGTTCT AGAAGAAAACGAGCA TERM 383 377250 - 377226 - G 71 -7.9 -3.70465 | overlap 377225 GAGAATCTAAAAAAC GAACTCCAAGC TCT GATTGAAGTTC TAGAAGAAAACGAGC glyQ 378197 - 377313 - | glycyl-tRNA synthetase subunit alpha recO 379002 - 378253 - | hypothetical protein LI0302 380026 - 379007 - | hypothetical protein TERM 384 379695 - 379709 + g 74 -5.8 -4.57569 | opp_overlap 379678 CCCCAAACATATGGC GAAAAA AAC TTTTTC TTTTTAAAAGGATAA ppi 380971 - 380045 - | parvulin-like peptidyl-prolyl isomerase LI0304 382058 - 381141 - | parvulin-like peptidyl-prolyl isomerase LI0305 385563 - 382096 - | transcription-repair coupling factor TERM 385 384796 - 384770 - G 76 -2.5 -5.47159 | gap 1 GGTAATAAAGAAAAA TCTTTTT-GTTC AAGC AAACGAAAAAGA CTGTAATGTTCATTC TERM 386 385052 - 385035 - G 73 -4.2 -4.9181 | opp_overlap 385035 385037, overlap 385006 ACATAATATCAAAAA TATCAC CACGTC GTGATA CTTCTCCTGGATTTG LI0306 387228 - 385645 - | integral membrane protein TERM 387 387173 - 387159 - G 76 -4.2 -5.15167 | overlap 387161 CAGCACCAATAAAAA TGCATG CAA CAAGCA TAATCCCCATTGTAT TERM 388 387458 - 387481 + H 72 -6.6 -4.26475 | opp_overlap 387460, overlap 387459 ATTCACCTTTTAACT TACCCGCTGT CAAG GCAGCGGGGG TATTTTTTCTAAGGT TERM 389 387459 - 387480 + H 70 -7.9 -3.14801 | opp_overlap 387460, overlap 387458 TTCACCTTTTAACTT ACCCGCTGT CAAG GCAGCGGGG GTATTTTTTCTAAGG TERM 390 387479 - 387460 - H 81 -10.7 -2.52896 | opp_overlap 387459 387458 TCACCTTTTAACTTA CCCGCTG TCAAGG CAGCGGG GGTATTTTTTCTAAG TERM 391 387659 - 387641 - g 81 -6 -4.88918 | TGATCTTAAAGAAAA TGCTGGAT ATG ATGCAGCA AGAGAACGTCAAGGT greA 387513 - 387986 + | transcription elongation factor greA TERM 392 389170 - 389158 - g 75 -4.9 -5.00895 | CTCATTACACAAAAA GAAAA AAT TTTTC ACAAACAACTCCTCA LI0308 388048 - 389358 + | 2-methylthioadenine synthetase yicC 389463 - 390344 + | hypothetical protein gmk 390597 - 391235 + | guanylate kinase pyrF 391242 - 391931 + | orotidine-5'-phosphate decarboxylase TERM 393 392655 - 392639 - g 93 -5.9 -5.80364 | ATTTGAACAAAAAAA CTACACA GCA TGTATAG ATCAACTGTTCCAAG LI0312 392001 - 392819 + | TPR repeat-containing protein TERM 394 392991 - 392979 - g 71 -7.7 -3.53012 | opp_overlap 392965 392979 TCCTCCTTTGGCAAA GAGGT ATT ACCTC TTTAGAAGAAATGAA TERM 395 392979 - 392991 + G 71 -7.7 -3.53811 | opp_overlap 392979, overlap 392965 TCCTCCTTTGGCAAA GAGGT ATT ACCTC TTTAGAAGAAATGAA recJ 392879 - 394585 + | single-stranded DNA-specific exonuclease pepP 395873 - 394647 - | Xaa-Pro aminopeptidase TERM 396 394880 - 394864 - G 75 -5.1 -5.02074 | CCATGTCCTAAAAAA GGTACAG CAT CTTTACC TGTACCCATAAATGT LI0315 396014 - 396430 + | CoA-binding protein LI0316 396615 - 397526 + | DnaJ-class molecular chaperone LI0317 397583 - 398272 + | adenylate kinase-like kinase LI0318 399626 - 398358 - | hypothetical protein TERM 397 398813 - 398800 - G 81 -8.1 -4.17023 | opp_overlap 398800 TCAACGAGCTGAAAA GCCTC ACAT GAGGC TATCTCAAATGTTCT LI0319 400849 - 399629 - | ADP-heptose:LPS heptosyltransferase TERM 398 400156 - 400170 + g 72 -2.8 -5.38951 | TCCAGTTAGTTTTTC CTGCAA GAT TTTCAG TTTTTTCTATAAGTT TERM 399 400364 - 400406 + g 80 -9.3 -3.57462 | gap 1 ACCTAAACCTTTTCC TCCAGATTTTGCCACAGGAT TAAC ATCCTGAGGTATAA-CTGGA TTTGGAGCTAACATA TERM 400 401472 - 401460 - g 80 -2.7 -5.63517 | overlap 401461 TGCTTAAAGAAAAAA CTGTA TGT TACAA ACAACGAACATTTAT cysG 401285 - 401962 + | siroheme synthase resC 401949 - 402839 + | ABC-type transport system involved in cytochrome c biogenesis, permease component hemA 402814 - 404079 + | glutamyl-tRNA reductase TERM 401 405042 - 404997 - g 79 -5.5 -5.1925 | gap 1 TTACAAGGGAAAAAA GTCCTACTTGCTGCAGCAGACA CAT TCCGTGCTGCAGCTA-TAGAAC AATTAGAAGTATGGG LI0323 404208 - 405515 + | Signal renition particle GTPase TERM 402 405758 - 405734 - g 70 -4.3 -4.79949 | opp_overlap 405734 TCGTGAAAAAAATAA GTCTTCAAACA GTA TGCTTAAGGAC TGTATAACGATCAAA thiE 405585 - 406238 + | thiamine monophosphate synthase gltD 407796 - 406369 - | NADPH-dependent glutamate synthase beta chain and related oxidoreductases TERM 403 408133 - 408117 - g 76 -6.7 -4.50627 | TATTGATGAAATAAA TACAAAT ATT ATTTGTA GTAAAGGTCATCTTA LI0326 408049 - 408975 + | SAM-dependent methyltransferase TERM 404 409537 - 409479 - T 100 -23 -3.09635 | opp_overlap 409484 409499, overlap 409499 ACCTTTACCAGGCAA TCATTCTATCTGTAATAAAAGCCATTCA AAT TGAATGGCTTTTATTACAGATAGTGTAA TAGTAAAATGACAGG TERM 405 409484 - 409532 + T 100 -29.5 -2.82834 | opp_overlap 409479 409499, overlap 409499 TACCAGGCAATCATT CTATCTGTAATAAAAGCCATTCA AAT TGAATGGCTTTTATTACAGATAG TGTAATAGTAAAATG TERM 406 409499 - 409517 + T 100 -11.8 -4.64676 | opp_overlap 409479 409499, overlap 409484 CTATCTGTAATAAAA GCCATTCA AAT TGAATGGC TTTTATTACAGATAG TERM 407 409517 - 409499 - T 100 -11.8 -4.64676 | opp_overlap 409499 409484, overlap 409479 CTATCTGTAATAAAA GCCATTCA AAT TGAATGGC TTTTATTACAGATAG LI0327 410542 - 409616 - | hypothetical protein LI0328 411035 - 410586 - | hypothetical protein TERM 408 411175 - 411203 + H 100 -6.3 -5.54338 | opp_overlap 411179, overlap 411176 411179 TATTTTTTACTTTAA TTAATATTTTTTA ACT TAAAAAATATTAC TTTTTATTTTAGTTA TERM 409 411176 - 411202 + H 86 -9.8 -3.90163 | opp_overlap 411179, overlap 411175 411179 ATTTTTTACTTTAAT TAATATTTTTTA ACT TAAAAAATATTA CTTTTTATTTTAGTT TERM 410 411179 - 411199 + H 73 -7.1 -4.02606 | opp_overlap 411179, overlap 411176 411175 TTTTACTTTAATTAA TATTTTTTA ACT TAAAAAATA TTACTTTTTATTTTA TERM 411 412764 - 412740 - g 72 -9.5 -2.72263 | opp_overlap 412738, overlap 412739 412743 ATATCCTGTTGAAAT TAATGCACTAT GGT ATAATGCATTA GCCTTTTCAGGATAC glgX 411409 - 413466 + | Glyen debranching enzyme TERM 412 414321 - 414291 - g 72 -2.7 -5.34381 | gap 1, overlap 414292 414294 AAATTCAAACAAAAA GTATGTA-CTCTTC CTTG GAAGAGTTACACAT CAAAAAGCCCCTGAA LI0330 413485 - 414825 + | putative glycosyltransferase amyA 414828 - 416114 + | alpha-amylase TERM 413 416691 - 416713 + G 80 -9.2 -3.53174 | opp_overlap 416695, overlap 416689 ACTATTCTTGGACGA TCAATGGCTG GTG CAGGCATTGA TATTTATGAAAATCT TERM 414 417818 - 417797 - g 70 -3.7 -4.96845 | opp_overlap 417801 417813, overlap 417799 417813 ACAAAAACAAACAAA CACACTTGT TATT ACAGGTGTA TCAAAAACACCTAAT glgP 416124 - 420386 + | carbohydrate phosphorylase family protein TERM 415 420445 - 420390 - T 100 -12.2 -4.82901 | opp_overlap 420397 420400 420405 420408 420436, overlap 420400 420405 CTTTGGGTATAAAAA GTTCACATAAGATAAGAAGGTATGGT AATT ACCATACCTTCTTATCTTATTATAAG TAATAACTATGTATT TERM 416 420397 - 420438 + T 100 -23.5 -3.37975 | opp_overlap 420390 420400 420405, overlap 420400 420405 420408 420436 TATAAAAAGTTCACA TAAGATAAGAAGGTATGGT AATT ACCATACCTTCTTATCTTA TTATAAGTAATAACT TERM 417 420400 - 420435 + T 100 -20.8 -3.82824 | opp_overlap 420390 420400 420405, overlap 420397 420405 420408 AAAAAGTTCACATAA GATAAGAAGGTATGGT AATT ACCATACCTTCTTATC TTATTATAAGTAATA TERM 418 420435 - 420400 - T 100 -20.8 -3.55323 | opp_overlap 420400 420397 420405 420408, overlap 420390 420405 AAAAAGTTCACATAA GATAAGAAGGTATGGT AATT ACCATACCTTCTTATC TTATTATAAGTAATA TERM 419 420405 - 420430 + T 100 -14.9 -3.87364 | opp_overlap 420400 420390 420405, overlap 420400 420397 420408 GTTCACATAAGATAA GAAGGTATGGT AATT ACCATACCTTC TTATCTTATTATAAG TERM 420 420430 - 420405 - T 100 -14.9 -3.79874 | opp_overlap 420405 420400 420397 420408, overlap 420400 420390 GTTCACATAAGATAA GAAGGTATGGT AATT ACCATACCTTC TTATCTTATTATAAG TERM 421 420408 - 420427 + T 93 -10.8 -4.04671 | opp_overlap 420405 420400 420390, overlap 420405 420400 420397 CACATAAGATAAGAA GGTATGGT AATT ACCATACC TTCTTATCTTATTAT argB 421350 - 420460 - | acetylglutamate kinase TERM 422 421274 - 421284 + g 70 -4 -4.87665 | TTTATGACAATCACT TTTC CTT GAAA TTTTTGTAAATACGG hslU 422672 - 421371 - | ATP-dependent protease ATP-binding subunit TERM 423 421559 - 421576 + g 70 -4.1 -4.65263 | overlap 421560 TTTGTGTATTCACAT CTTCAGC AAAT GCTGAAA TTTCTTTTAACCCAT livF 423464 - 422757 - | branched chain amino acid ABC transporter, ATP-binding protein livG 424278 - 423517 - | branched chain amino acid ABC transporter, ATP-binding protein livM 425274 - 424288 - | branched chain amino acid ABC transporter, permease protein livH 426173 - 425271 - | branched chain amino acid ABC transporter, permease protein TERM 424 425869 - 425885 + g 74 -5.9 -4.63218 | opp_overlap 425857 425869 AAAGCTGAAACAACA GCAGATA ATC TATTTGC TTTTCTTAGAGGACG LI0339 427348 - 426224 - | ABC-type branched-chain amino acid transport systems, periplasmic component TERM 425 427588 - 427572 - H 86 -8.1 -4.64846 | opp_overlap 427572 TTAGAAATGATAAAA GAGTATA GTT TATACTC TTGCCTTACCTAAAA TERM 426 427572 - 427588 + H 70 -8.1 -3.19192 | opp_overlap 427572 TTAGAAATGATAAAA GAGTATA GTT TATACTC TTGCCTTACCTAAAA LI0340 427714 - 428691 + | hypothetical protein LI0341 428956 - 429660 + | hypothetical protein TERM 427 430088 - 430074 - g 73 -8.6 -3.30925 | overlap 430073 AAGCAGCAAATAAAG CAGCTT TTG AAGCTG GTGGACGCTCCATTG leuB 429818 - 430519 + | Rossmann fold nucleotide-binding protein TERM 428 430960 - 430994 + G 71 -5.3 -4.59424 | gap 2, opp_overlap 430965, overlap 430954 430965 TATGGGGCAGCAGAA CTA--AATACAGGAAGT ATT ACTTCCTGTATTGCTGG TTTTGATTTACCTTT TERM 429 430987 - 430965 - g 100 -13.6 -4.02108 | opp_overlap 430960 430954 430965 GGCAGCAGAACTAAA TACAGGAAGT ATT ACTTCCTGTA TTGCTGGTTTTGATT TERM 430 430965 - 430987 + G 95 -13.6 -3.39207 | opp_overlap 430965, overlap 430960 430954 GGCAGCAGAACTAAA TACAGGAAGT ATT ACTTCCTGTA TTGCTGGTTTTGATT codA 430612 - 431100 + | cytosine/adenosine deaminases LI0344 431319 - 431606 + | hypothetical protein LI0345 431805 - 432596 + | SAM-dependent methyltransferases TERM 431 433127 - 433156 + T 93 -10.9 -4.15864 | opp_overlap 433127, overlap 433130 TCAAACTATAAAAAA GAATACTCCTTAC AAAA GTAAAGAGTATTC TTTATACTTGTTATA TERM 432 433156 - 433127 - T 100 -13.1 -5.42265 | opp_overlap 433127 433130 TCAAACTATAAAAAA GAATACTCCTTAC AAAA GTAAAGAGTATTC TTTATACTTGTTATA TERM 433 433130 - 433153 + T 73 -6.8 -4.1774 | opp_overlap 433127, overlap 433127 AACTATAAAAAAGAA TACTCCTTAC AAAA GTAAAGAGTA TTCTTTATACTTGTT htrA 434617 - 433193 - | trypsin domain/PDZ domain-containing protein flgE 437232 - 434818 - | flagellar hook protein FlgE TERM 434 436787 - 436803 + g 72 -5.1 -4.67608 | overlap 436789 TATTTCTCTAGACGG TAGGCAA GAA TTGCCTC TTTTATCTTACGCTC TERM 435 436789 - 436801 + g 76 -7.7 -3.94773 | overlap 436787 TTTCTCTAGACGGTA GGCAA GAA TTGCC TCTTTTATCTTACGC TERM 436 436997 - 436987 - G 80 -6.8 -4.65895 | overlap 436967 TTCTGCAGCTAAAAA TGCC TTA GGCA AAAAAGGAGACATTT flgE 438891 - 437383 - | flagellar hook protein FlgE purC 439256 - 440152 + | phosphoribosylaminoimidazole-succinocarboxamide synthase fabI 440193 - 440957 + | enoyl-[acyl-carrier-protein] reductase (NADH) mdh 441137 - 442456 + | malate dehydrogenase rpsF 442654 - 442971 + | 30S ribosomal protein S6 rplI 443247 - 443768 + | 50S ribosomal protein L9 TERM 437 443809 - 443833 + F 85 -10.9 -3.19157 | opp_overlap 443814, overlap 443814 AAGAATGATTCTTCC GTAAATCATGT ATC ACATGATTTGC TTCGTAGAGTTCCTC TERM 438 443828 - 443814 - f 70 -7.2 -3.53444 | opp_overlap 443809 443814 TGATTCTTCCGTAAA TCATGT ATC ACATGA TTTGCTTCGTAGAGT TERM 439 443814 - 443828 + F 74 -7.2 -3.95852 | opp_overlap 443814, overlap 443809 TGATTCTTCCGTAAA TCATGT ATC ACATGA TTTGCTTCGTAGAGT recQ 443830 - 445194 + | replicative DNA helicase LI0355 446039 - 445449 - | rRNA methylases LI0356 448086 - 446089 - | ABC transporter ATPase TERM 440 447705 - 447729 + g 85 -8.7 -4.19953 | ATTCAGGATGATATC CATATAGAGTT TCA AGCTCTGTATG TTTTAAACTTAGCTC pcm 448959 - 448090 - | protein-L-isoaspartate carboxylmethyltransferase TERM 441 450852 - 450874 + G 85 -10.6 -3.41708 | opp_overlap 450850 450851 ATTCTTAAAGGAACT CCAGTTGCTG CAG CAGCAAATGG TTCAATTTTACTTCC LI0358 449124 - 451136 + | asmA protein mgtE 452531 - 451158 - | Mg2+/Co2+ transporter TERM 442 451291 - 451277 - G 70 -4.2 -4.73635 | overlap 451285 TATAACGGAAGAAAA GAGGAA TAG CTCCCC CTGCAAGGGATCCTG nadC 452761 - 453651 + | nicotinate-nucleotide pyrophosphorylase LI0361 453648 - 454703 + | quinolinate synthetase TERM 443 456011 - 455996 - g 93 -3.4 -6.06723 | TTCCCGAAAAAAAAA TAAAAA GAAC TTTTTA TCTACACGTATTATC nadB 454752 - 456335 + | aspartate oxidase LI0363 456695 - 456390 - | integral membrane protein gph 457475 - 456801 - | phosphatases TERM 444 456917 - 456904 - G 73 -8.1 -3.52459 | opp_overlap 456901 456904 ATTAATGGTATAGAA GCAGC ACGA GCTGC TCCTTCATCAGTTAA LI0365 458686 - 457964 - | DNA uptake lipoprotein TERM 445 458470 - 458449 - G 93 -5.9 -5.86061 | gap 1, opp_overlap 458449 TTTCATCAAAAAAAA GAGCAT-CAC CAA GTGCACGCTC TGCTTCAACTGTATA trxB 459618 - 458692 - | thioredoxin reductase TERM 446 459592 - 459609 + g 75 -8.5 -3.41693 | overlap 459596 459597 TGCAGGTCCACCACC TACGACA ATAC TGTCGTA TTGCTTCATGATAAC trxA 459938 - 459615 - | Thiol-disulfide isomerase and thioredoxins ygjD 461131 - 460064 - | metal-dependent proteases with chaperone activity fbp 462242 - 461235 - | fructose-1,6-bisphosphatase LI0370 463225 - 462356 - | hypothetical protein LI0371 464136 - 463255 - | hypothetical protein TERM 447 463985 - 463971 - G 76 -2.8 -5.53991 | opp_overlap 463979, overlap 463972 GATGTATTAAAAAAA GTCTTG CTT CAAGAA AATCTGGATGATGTT LI0372 464470 - 464159 - | hypothetical protein pgsA 465042 - 464482 - | phosphatidylglycerophosphate synthase TERM 448 465064 - 465076 + r 71 -4.9 -4.76644 | TCACATTGCTCTGAT GTTTT AGC AAAAC TTTTTCCTCAATCTT LI0374 466008 - 465190 - | ATPases involved in chromosome partitioning pcm 466769 - 466089 - | protein-L-isoaspartate carboxylmethyltransferase TERM 449 468054 - 468041 - g 78 -2.4 -5.5943 | opp_overlap 468041 AAATTAGTAAAAAAA CATC CCCTAT GATG TTATGGTCAGGGAAA LI0376 467194 - 468507 + | membrane proteins related to metalloendopeptidases TERM 450 469471 - 469460 - g 74 -3 -5.31855 | TACTAAGAATAAAAA TCTT GAGG AAGA ATTAAAACAAATAGC rpsB 468756 - 469631 + | 30S ribosomal protein S2 TERM 451 470494 - 470473 - g 86 -5.3 -5.66684 | gap 1 GAACTTATAAAAAAA GTT-TCCAAT GAA ATTGGAGAAC CTATATCTATTATAG tsf 469657 - 470541 + | elongation factor Ts TERM 452 470552 - 470580 + F 90 -11.9 -3.281 | opp_overlap 470552 470558, overlap 470557 470558 AATAGCTTTAAGAAA TAAAAAGGGGG CGTTTGC CCCCCTTTTTA TATTATAACTTAGGA TERM 453 470580 - 470552 - f 100 -11.9 -4.17958 | opp_overlap 470552 470557 470558, overlap 470558 AATAGCTTTAAGAAA TAAAAAGGGGG CGTTTGC CCCCCTTTTTA TATTATAACTTAGGA TERM 454 470557 - 470574 + F 100 -8.3 -5.1523 | opp_overlap 470552 470558, overlap 470552 470558 CTTTAAGAAATAAAA AGGGGGC GTTT GCCCCCC TTTTTATATTATAAC TERM 455 470558 - 470573 + F 95 -11.8 -3.68053 | opp_overlap 470552 470558, overlap 470557 470552 TTTAAGAAATAAAAA GGGGGC GTTT GCCCCC CTTTTTATATTATAA TERM 456 470573 - 470558 - f 100 -11.8 -5.47159 | opp_overlap 470558 470557 470552, overlap 470552 TTTAAGAAATAAAAA GGGGGC GTTT GCCCCC CTTTTTATATTATAA galE 470643 - 471623 + | nucleoside-diphosphate-sugar epimerases LI0380 471627 - 472781 + | cell wall biogenesis regulatory protein lgtF 472788 - 473591 + | cell wall biosynthesis glycosyltransferase pyrH 473612 - 474328 + | uridylate kinase rrf 474332 - 474898 + | ribosome recycling factor yaeS 474934 - 475656 + | undecaprenyl pyrophosphate synthase TERM 457 476421 - 476431 + G 70 -4 -4.86822 | ATACCAACATATGCA CTTT TAA AAAG TTTTATTGTCTACTT cdsA 475653 - 476450 + | CDP-diglyceride synthetase dxr 476513 - 477721 + | 1-deoxy-D-xylulose 5-phosphate reductoisomerase TERM 458 478209 - 478185 - g 89 -8.6 -4.63007 | opp_overlap 478187 478207, overlap 478187 GACAATCACAGAAAA TAGTCCTGCA GAACA TGCAGGACTT CTTCCAGGAGATATT TERM 459 478187 - 478207 + G 90 -11.2 -3.61715 | opp_overlap 478185 478187 CAATCACAGAAAATA GTCCTGCA GAACA TGCAGGAC TTCTTCCAGGAGATA TERM 460 478207 - 478187 - g 93 -11.2 -3.91421 | opp_overlap 478187, overlap 478185 CAATCACAGAAAATA GTCCTGCA GAACA TGCAGGAC TTCTTCCAGGAGATA LI0387 477721 - 478845 + | membrane-associated Zn-dependent proteases 1 TERM 461 479485 - 479468 - g 80 -4.9 -5.2189 | TCAACTAGTAAAAAA CATTCCT CATG AAGAATG GAAACATAATGATCC LI0388 478842 - 479636 + | hypothetical protein TERM 462 479687 - 479715 + F 70 -5.5 -4.6644 | opp_overlap 479689, overlap 479689 AAAAAACTAGCTTAA AAGAAATAAATGA TTA TTATTTATTTCTG TTTTTAGAATATATT TERM 463 479689 - 479713 + F 79 -8.1 -3.93817 | opp_overlap 479689, overlap 479687 AAAACTAGCTTAAAA GAAATAAATGA TTA TTATTTATTTC TGTTTTTAGAATATA TERM 464 480236 - 480250 + F 80 -4.4 -5.50499 | opp_overlap 480236, overlap 480231 TCTTACTTAATGAAA TAATAT TTT ATATTA TTTTTTTAACTATAA TERM 465 480256 - 480289 + F 100 -17.1 -3.1875 | opp_overlap 480263 480266, overlap 480260 480266 480281 TTTTATATTATTTTT TTAACTATAACAGAC TATA GTCTGTTATAGTTAA TTCCATTAAACTATA TERM 466 480260 - 480285 + F 100 -13.5 -3.4052 | opp_overlap 480263 480266, overlap 480256 480266 480281 ATATTATTTTTTTAA CTATAACAGAC TATA GTCTGTTATAG TTAATTCCATTAAAC TERM 467 480282 - 480263 - f 75 -9.4 -2.71364 | opp_overlap 480260 480256 480266 480281, overlap 480266 TTATTTTTTTAACTA TAACAGAC TATA GTCTGTTA TAGTTAATTCCATTA LI0389 480542 - 481426 + | modification methylase BepI (cytosine-specific methyltransferase BepI) TERM 468 481533 - 481478 - T 100 -17.4 -2.95306 | opp_overlap 481481 481493, overlap 481481 481493 AAATAACATAGCAGA TTATTTATGTATAAACCCTATATAGC ATGT ACTATATAGGGTTTATACATAAATTC TGGTGGGTCGTGCGG TERM 469 481481 - 481530 + T 100 -22.8 -3.42996 | opp_overlap 481481 481478 481493, overlap 481493 TAACATAGCAGATTA TTTATGTATAAACCCTATATAG CATGTA CTATATAGGGTTTATACATAAA TTCTGGTGGGTCGTG TERM 470 481530 - 481481 - T 100 -23.5 -2.7012 | opp_overlap 481481 481493, overlap 481478 481493 TAACATAGCAGATTA TTTATGTATAAACCCTATATAGC ATGT ACTATATAGGGTTTATACATAAA TTCTGGTGGGTCGTG TERM 471 481493 - 481518 + T 93 -10.6 -3.93583 | opp_overlap 481493 481481 481478, overlap 481481 TTATTTATGTATAAA CCCTATATAG CATGTA CTATATAGGG TTTATACATAAATTC TERM 472 481518 - 481493 - T 95 -11.3 -3.92869 | opp_overlap 481481 481493, overlap 481481 481478 TTATTTATGTATAAA CCCTATATAGC ATGT ACTATATAGGG TTTATACATAAATTC TERM 473 481592 - 481578 - T 70 -6.4 -4.07687 | opp_overlap 481567 481579, overlap 481579 ACTCTCTGCTTAAAA GGCAGA TAC TCTACC TGCTGAGTTAACGAC proS 483527 - 481800 - | prolyl-tRNA synthetase TERM 474 481871 - 481860 - G 71 -3 -5.03747 | overlap 481862 AAAGTCTGTAAAAAA TCTT TCTA AAGA AAATGAAGACTTCTC LI0391 484544 - 483648 - | Fe-S oxidoreductase mreB 484633 - 485673 + | Actin-like ATPase involved in cell morphogenesis mreC 485787 - 486668 + | cell shape-determining protein TERM 475 486913 - 486931 + G 79 -4.6 -5.23396 | TTTTATCGGGTGTTG GTTATTTG AAA CAAAAAAC TTTTTATTCATTATT LI0394 486665 - 487135 + | hypothetical protein LI0395 487119 - 488912 + | cell division protein FtsI/penicillin-binding protein 2 rodA 488937 - 490052 + | rod shape-determining protein RodA LI0397 490077 - 490424 + | integral membrane protein CcmA involved in cell shape determination LI0398 490519 - 490941 + | F0F1-type ATP synthase, subunit b atpF 490959 - 491537 + | F0F1-type ATP synthase, subunit b atpE 491534 - 492100 + | F0F1 ATP synthase subunit delta TERM 476 492559 - 492543 - g 73 -7.3 -3.98282 | opp_overlap 492543 GTTACAGGAATTAAA GCCATTG ATG CAATGAC TCCTATTGGCCGTGG atpD 492090 - 493610 + | F0F1 ATP synthase subunit alpha TERM 477 493836 - 493846 + G 76 -4 -5.34365 | AAAACGGACTAATGG TACA TCC TGTA TTTTTATTCTTATAA atpC 493615 - 494484 + | F0F1 ATP synthase subunit gamma TERM 478 494559 - 494584 + G 73 -9.1 -2.87003 | opp_overlap 494563 494574, overlap 494554 494563 GGAGCTGTTGTAGAT GTAAGTTTTCC AAAT GGAAAACTTCC TCCTATTCTTACTGC TERM 479 494580 - 494563 - g 71 -8.5 -3.12351 | opp_overlap 494559 494554 494563, overlap 494574 CTGTTGTAGATGTAA GTTTTCC AAAT GGAAAAC TTCCTCCTATTCTTA TERM 480 494563 - 494580 + G 73 -8.5 -3.30452 | opp_overlap 494563 494574, overlap 494559 494554 CTGTTGTAGATGTAA GTTTTCC AAAT GGAAAAC TTCCTCCTATTCTTA TERM 481 495225 - 495246 + G 83 -5.9 -5.15167 | opp_overlap 495215 495228 GAATACTTCCGTGAT GAAGAACAT CAAG ATGTCCTTC TTTTTATTGATAATA atpB 494508 - 495923 + | F0F1 ATP synthase subunit beta atpA 495934 - 496335 + | F0F1 ATP synthase subunit epsilon xseA 496471 - 497913 + | exonuclease VII, large subunit LI0406 497938 - 498807 + | membrane proteins related to metalloendopeptidases LI0407 499089 - 499991 + | geranylgeranyl pyrophosphate synthase TERM 482 500954 - 500944 - g 77 -5.4 -4.88217 | overlap 500953 ACCAAAAAAGGAAAA GGTT ATG AACC AGCAGAAAAAAATCC TERM 483 501803 - 501772 - g 71 -8.9 -3.03007 | opp_overlap 501769 501772 501775 501801, overlap 501761 501775 AATATTCTTTTAATA GAAGAAAATGCTC TTGCTG GAGGATTTTCTTC TGCTGTTGTAGAACT TERM 484 501772 - 501803 + G 76 -9.6 -2.80252 | opp_overlap 501761 501772 501775, overlap 501769 501775 501801 AATATTCTTTTAATA GAAGAAAATGCTCT TGCT GGAGGATTTTCTTC TGCTGTTGTAGAACT dsx 500065 - 501978 + | 1-deoxy-D-xylulose-5-phosphate synthase LI0409 503026 - 502001 - | ATPase trpA 505217 - 504438 - | bifunctional tryptophan synthase TRPB trpB 506397 - 505228 - | tryptophan synthase subunit beta trpF 507004 - 506387 - | phosphoribosyl anthranilate isomerase trpC_2 507704 - 506982 - | indole-3-glycerol phosphate synthase protein trpD 508744 - 507758 - | anthranilate phosphoribosyltransferase LI0415 509877 - 508741 - | kynureninase (kyurenine hydrolase) LI0416 510698 - 509880 - | ABC transporter permease LI0417 511422 - 510688 - | ABC transporter ATP-binding protein LI0418 512397 - 511426 - | hypothetical protein TERM 485 512461 - 512435 - H 72 -8.1 -3.322 | opp_overlap 512431 512435 AGTTTTATAGATGAA GGTGCATTAGA TTAAT TCTAATGCAGC TCAATTACATATAAG LI0419 514084 - 514919 + | short chain dehydrogenase, putative bioB 515935 - 514967 - | biotin synthase TERM 486 516226 - 516236 + G 71 -6.8 -4.19927 | opp_overlap 516216 516226, overlap 516216 ATAAACATACTGAAA CAGC TAT GCTG TTTATATCTGGTTTT TERM 487 516742 - 516718 - g 71 -8.8 -3.11687 | opp_overlap 516722, overlap 516700 516699 516722 TTAAGGATTACCTAA TAAATAAAGC TACTG GCTTTATTTA TTCCACAGCAGGCTC bioF 515952 - 517097 + | 7-keto-8-aminopelargonate synthetase and related enzymes LI0422 517094 - 517732 + | hypothetical protein bioC 517752 - 518495 + | ubiE/COQ5 methyltransferase family protein bioD 518495 - 519106 + | dethiobiotin synthetase TERM 488 519494 - 519471 - g 70 -4.6 -4.75404 | AAATTGCATTAAAAA TGGCATACCA ATAT TGGTATAACA AAAAACATCCTGAAA bioA 519110 - 520387 + | adenosylmethionine-8-amino-7-oxononanoate aminotransferase LI0427 521032 - 520457 - | hypothetical protein TERM 489 520771 - 520782 + g 70 -2.2 -5.23765 | TTTTTATTTTTCTAC TAGG TAAT CCTG TTTTTATGTTATTTC TERM 490 522320 - 522304 - H 70 -5.2 -4.68601 | opp_overlap 522304 ACTTAAAATAACAAA TAGAGA TAACG TCTCTA TTCCTATGTTACCTT TERM 491 523201 - 523216 + G 71 -3.3 -5.07567 | TAGAGTTATTTTACT TGCAA TGGGCC TTGCA TTTTTTAAACTCTCA putP 522545 - 523912 + | sodium-dependent transporter TERM 492 523972 - 523927 - T 100 -15.2 -4.16301 | opp_overlap 523927 AATGTACAGAAATAA CCAAGTAAAAATATTCTTAT AGCTTA AAAAGAATATTTTTACTTGG TTTTGCTATTTTAAC TERM 493 523927 - 523972 + T 100 -15.2 -4.55826 | opp_overlap 523927 AATGTACAGAAATAA CCAAGTAAAAATATTCTTAT AGCTTA AAAAGAATATTTTTACTTGG TTTTGCTATTTTAAC hemN 525074 - 524004 - | coproporphyrinogen III oxidase-like protein TERM 494 524131 - 524119 - G 86 -2.7 -5.93809 | overlap 524120 TGCCCATAAAAAAAA CCTTT ACA AAAAG ATGGTAAACAAACAG TERM 495 525002 - 525018 + g 87 -6.7 -5.44721 | opp_overlap 525002 525001 ATGGTAAAAAAATAG GTATAAT ACG ATTATAC TTTTTTTCCCCTAAT LI0430 525142 - 525582 + | histidine triad nucleotide-binding protein himA 525657 - 525947 + | nucleoid DNA-binding protein LI0432 526742 - 526092 - | S-adenosylmethionine-dependent methyltransferase involved in cell division dsbD 528847 - 527009 - | hypothetical protein TERM 496 527745 - 527729 - G 76 -6.5 -4.62051 | overlap 527730 AAATATTATATAAAA TGGCTGT AAC ACAGCCC AACCTAGAACACCCC TERM 497 527744 - 527730 - G 81 -10 -3.35604 | overlap 527729 AATATTATATAAAAT GGCTGT AAC ACAGCC CAACCTAGAACACCC LI0434 530338 - 529148 - | glycosyltransferase TERM 498 529784 - 529770 - G 78 -2.1 -5.69262 | overlap 529771 TCAGAAAAATAAAAA CGTTG GTTAT CAACA CCACCAATAATAGTA TERM 499 530353 - 530331 - G 70 -4.2 -4.78149 | opp_overlap 530335, overlap 530333 530335 530344 GCCATAATGTAAAAA TATAGCATTA TAA TAATGCTTCA TCAATCTAGATAATA TERM 500 530467 - 530433 - H 77 -7.5 -4.33151 | overlap 530437 GATTACAATTGAAAA TATACATATTTTTTA TTATC TAAAAAATATGAATA AATATAAGGGGCAGT TERM 501 530463 - 530437 - H 75 -8.3 -3.45395 | overlap 530433 ACAATTGAAAATATA CATATTTTTTA TTATC TAAAAAATATG AATAAATATAAGGGG aspC 530484 - 531716 + | L,L-diaminopimelate aminotransferase LI0436 532644 - 531796 - | PhyA2 TERM 502 532415 - 532397 - GT 80 -2.5 -5.72622 | gap 1, overlap 532399 TGCATAAATAAAAAA CATTCTGT TGCC ACAGAA-G CAAAATGCAATCCTC TERM 503 532414 - 532399 - GT 74 -6.2 -4.49311 | overlap 532397 CATAAATAAAAAACA TTCTGT TGCC ACAGAA GCAAAATGCAATCCT LI0437 533117 - 532566 - | histidine acid phosphatase LI0438 534693 - 533368 - | PhyA2 TERM 504 534499 - 534513 + g 71 -5.6 -4.52873 | overlap 534500 ATAACCATCTTTTAC AGGCCA ATA TGGCCA TTGTTTTTCTGACCA TERM 505 534500 - 534512 + g 77 -9.1 -3.31001 | overlap 534499 TAACCATCTTTTACA GGCCA ATA TGGCC ATTGTTTTTCTGACC TERM 506 534922 - 534908 - H 70 -7.2 -3.54653 | opp_overlap 534904 ATTGTTATTATATAA TGTTAC TAA GTAACA TGAATAGATTGCAAT hyaA 535099 - 536355 + | hydrogenase-1 small subunit TERM 507 537953 - 537940 - g 73 -3.9 -5.186 | opp_overlap 537940 TAAAAGACACAAAAA TTGAT CGCT ATCAA TGTGTAGTCCCTACT hyaB 536370 - 538178 + | hydrogenase-1 large subunit hyaC 538288 - 538992 + | Ni/Fe-hydrogenase 1 B-type cytochrome subunit hyaD 538995 - 539531 + | processing of HyaA and HyaB proteins LI0443 540291 - 540695 + | hypothetical protein TERM 508 540912 - 540899 - g 86 -2.5 -5.80951 | opp_overlap 540899 ATTCAAAACAAAAAA TTTTT ATAG AAAAA TTATTATCTGAAACA LI0444 540700 - 541770 + | glycosyltransferase dtd 542361 - 541891 - | D-tyrosyl-tRNA deacylase LI0446 543601 - 542402 - | 4-diphosphocytidyl-2-methyl-D-erithritol synthase TERM 509 542893 - 542907 + g 75 -5 -4.99435 | CATAGCCATACCCTA CTATAG GAA CTGTAG TTTTTGGTTGTTCGA TERM 510 543928 - 543945 + G 71 -6.3 -4.16943 | gap 1, overlap 543928 CCGAAGATCACTCTT C-CTGGGT GTT ACCCAGCG TTTTACCCTATGAAG LI0447 543696 - 543989 + | hypothetical protein LI0448 544812 - 544048 - | hypothetical protein LI0449 545644 - 544847 - | hypothetical protein purL 546591 - 545767 - | phosphoribosylformylglycinamidine synthase domain-containing protein TERM 511 546853 - 546833 - g 71 -7.7 -3.52813 | overlap 546831 546829 AAAGGACAAAATACA TGAAGACAA AAT TTATCTTCA TTACAGGAGGAGTAC pyrG 546832 - 548484 + | CTP synthetase kdsA 548515 - 549321 + | 2-dehydro-3-deoxyphosphooctonate aldolase TERM 512 549906 - 549894 - g 89 -3.4 -5.83211 | overlap 549887 TATCAAAATAAAAAA GAAG CTCTT CTTC ATACATGGATGAATC LI0453 549318 - 549929 + | HAD superfamily low specificity phosphatase LI0454 550004 - 550549 + | hypothetical protein LI0455 550649 - 551218 + | hypothetical protein TERM 513 551408 - 551396 - g 72 -4.9 -4.67904 | opp_overlap 551390 CATCAAGTGGAAAAA TTTTC TTT GAAAA TCAGGACATCAGTTC LI0456 551218 - 551940 + | ABC transporter ATPase rpoN 552086 - 553507 + | DNA-directed RNA polymerase specialized sigma subunit, sigma54-like protein TERM 514 553659 - 553644 - g 76 -2.6 -5.52384 | TTTGTAGGAAAAAAA GTATCT CTTG AAATAC AACTTCTTATGGATG LI0458 553542 - 554078 + | ribosome-associated protein Y (PSrp-1) LI0459 554113 - 555078 + | hypothetical protein TERM 515 555926 - 555946 + G 85 -11.9 -3.14881 | TTGGTTTTATTGGAT TTGGAGGAC CTT GTCCTCCAG TTGGTGCAAAACTTC LI0460 555553 - 556104 + | putative outer membrane protein TERM 516 556255 - 556308 + T 75 -3.3 -5.48054 | opp_overlap 556265 556270, overlap 556270 TAATTTCTTCAACGA AATATAAAAAGAAAACTATCCTTGA TAAT TCAAGGATAGTTTTCTACTAGAATC TTTTTTAATTTTAAT TERM 517 556298 - 556265 - T 100 -18.5 -5.23644 | opp_overlap 556255 556270, overlap 556270 AACGAAATATAAAAA GAAAACTATCCTTGA TAAT TCAAGGATAGTTTTC TACTAGAATCTTTTT TERM 518 556270 - 556293 + T 100 -12.6 -4.46926 | opp_overlap 556265 556270, overlap 556255 AATATAAAAAGAAAA CTATCCTTGA TAAT TCAAGGATAG TTTTCTACTAGAATC TERM 519 556293 - 556270 - T 100 -12.6 -5.40873 | opp_overlap 556270 556255, overlap 556265 AATATAAAAAGAAAA CTATCCTTGA TAAT TCAAGGATAG TTTTCTACTAGAATC LI0461 557819 - 556323 - | hypothetical protein gltX 559373 - 557976 - | glutamyl-and glutaminyl-tRNA synthetases LI0463 560727 - 559477 - | hypothetical protein pgk 562121 - 560781 - | phosphoglycerate kinase LI0465 562525 - 563409 + | hypothetical protein galE 564431 - 563439 - | nucleoside-diphosphate-sugar epimerases TERM 520 563525 - 563552 + g 77 -5.5 -4.93547 | overlap 563528 CAATATTTGAATATT GTGGCCTCCAT CCAAGT AAGGAGGCTGC TTTTTGATTACTTGA cynT 565308 - 564532 - | carbonic anhydrase rfbB 566233 - 567591 + | dTDP-D-glucose 4,6-dehydratase TERM 521 569316 - 569305 - g 82 -3 -5.64321 | opp_overlap 569312 AGAAGAAAATAAAAA TCTT AGAG AAGA ACTAACTTCATGTTA LI0469 567584 - 569458 + | hypothetical protein TERM 522 569684 - 569672 - f 73 -3.5 -5.41143 | TATGCTCTAAAAAAA TAAAT AAT ATTTA CCCTTATTAAAAAGA TERM 523 570104 - 570093 - g 73 -4.4 -4.85599 | GTCATCCCATAAAAA GAAG ACAA CTTC TGCACACCGGGATAG LI0470 569852 - 570466 + | membrane proteins related to metalloendopeptidases TERM 524 570470 - 570458 - f 90 -4.9 -5.89921 | ACTACAACAAAAAAA GAAAT GTA ATTTC CATTCATTGGTAATA TERM 525 570679 - 570663 - g 73 -7.3 -4.07568 | opp_overlap 570652 TCTTTTTTTCTAAAA GGAGAAA AAC TTCCTCC TAAATCTGTGCTCAT TERM 526 571141 - 571119 - g 80 -4.8 -5.27335 | opp_overlap 571121 571139 571140, overlap 571120 571121 571140 TGTTTTAAAGAAAAA TCTGCCTTAC ACT GTAAGGCATT TATTCCTTCGAATAA TERM 527 571140 - 571120 - g 75 -8.3 -3.75678 | opp_overlap 571121 571139, overlap 571119 571121 GTTTTAAAGAAAAAT CTGCCTTAC ACT GTAAGGCAT TTATTCCTTCGAATA TERM 528 571121 - 571139 + G 100 -11.8 -4.32951 | opp_overlap 571120 571119 571121 TTTTAAAGAAAAATC TGCCTTAC ACT GTAAGGCA TTTATTCCTTCGAAT TERM 529 571139 - 571121 - g 84 -11.8 -2.84684 | opp_overlap 571121, overlap 571120 571119 TTTTAAAGAAAAATC TGCCTTAC ACT GTAAGGCA TTTATTCCTTCGAAT LI0471 570504 - 571607 + | xylanase/chitin deacetylase LI0472 572678 - 571638 - | permease TERM 530 571845 - 571821 - G 78 -2.1 -5.75342 | overlap 571822 TGTTTTCAAAAAAAA CGGCCTTAATA AGT TATCAACGCCT GCAACAACAATAACA LI0473 577249 - 573983 - | putative DNA methylase protein TERM 531 575285 - 575319 + g 100 -9.5 -5.0916 | AGCCATCACTATTGA TAGTTGAGGCTTATT CTCTA GATAAGACTCAACTA TTTTTCTATTAGACG TERM 532 576985 - 577005 + g 80 -9.1 -3.61654 | TTATTTTTCCATTTT TGTCTGTTA AAA TAACAGGCA TTTCAAATAGATATG TERM 533 577740 - 577717 - R 82 -6.6 -5.07486 | opp_overlap 577715 577717 577718, overlap 577718 CATTTTGAATAAAAA TGGCCTGGAG ATAA CTCTAGGCCT ATGTTTTACGCTTTT TERM 534 577717 - 577741 + r 72 -7.2 -3.73411 | gap 1, opp_overlap 577717 577718, overlap 577715 577718 CATTTTGAATAAAAA T-GGCCTGGAG ATAA CTCTAGGCCTA TGTTTTACGCTTTTG TERM 535 577718 - 577739 + r 91 -12.3 -3.43039 | opp_overlap 577717 577718, overlap 577717 577715 ATTTTGAATAAAAAT GGCCTGGAG ATAA CTCTAGGCC TATGTTTTACGCTTT TERM 536 577739 - 577718 - R 84 -10.1 -3.63768 | opp_overlap 577718 577717 577715, overlap 577717 ATTTTGAATAAAAAT GGCCTGGAG ATAA CTCTAGGCC TATGTTTTACGCTTT LI0474 579749 - 579345 - | tellurite resistance LI0475 580343 - 579945 - | hypothetical protein TERM 537 580397 - 580416 + H 72 -8 -3.40019 | opp_overlap 580409 580410, overlap 580396 580410 TAACTAATCCTACTA CTTTAAAG AGAA CTTTAAAG CTTTTTAAAATTAGT TERM 538 581015 - 581049 + H 79 -8.2 -3.86897 | gap 1, opp_overlap 581014 581018, overlap 581018 TAATTTTTATAGGAC GAACTATTA-CAGTA ATAAGA TACTGCTAATAGTTC TTTATAGAGGATAAC TERM 539 581073 - 581096 + H 100 -10.4 -5.65177 | overlap 581056 GGATAACAATATTTC CTCCTTTGTC CCTT GATAAAGGAG TTTTTTTATCCCTAT TERM 540 581242 - 581257 + G 73 -7.6 -3.75738 | GAGGTGGCCTTCTCA CTTGCA GCTA TGCAAG TTATTCGTCGTAATG TERM 541 582398 - 582387 - g 74 -5.8 -4.48176 | TATAAAAGGAACAAA TGGC CAAA GCCA AGGGGTTATTCCCTT TERM 542 582833 - 582800 - g 71 -7.5 -3.53444 | gap 1, opp_overlap 582796 582800 582803 CTATGTTGTTTGAAA CAGGACATCCATGGAT TAC ATTCAAGGATG-CCTG TAATCTTCGTTCGCC TERM 543 582800 - 582833 + G 76 -9.7 -2.80699 | gap 1, opp_overlap 582800, overlap 582796 582803 CTATGTTGTTTGAAA CAGGACATCCATGGAT TAC ATTCAAGGATG-CCTG TAATCTTCGTTCGCC nrdA 581215 - 583965 + | ribonucleotide-diphosphate reductase subunit alpha nrdB 584106 - 585107 + | ribonucleotide reductase, beta subunit LI0478 586632 - 585484 - | cytosine deaminase-like protein TERM 544 587136 - 587118 - H 91 -6 -5.63517 | opp_overlap 587118 587122, overlap 587111 CTTTCAAAGAAAAAA TACCTTAC CCG GTATGGTA ATTTTCCTCCAGTTA TERM 545 588287 - 588267 - g 75 -4.7 -4.85599 | overlap 588268 TCCATTTTATAAAAA CTGTATGTG CTT CACAGACAA ATGTTCAATACCTAC TERM 546 588626 - 588636 + G 83 -6.8 -4.99947 | AAAATGGGACCTGAT GGCA TTA TGCC TTTTATTTACTTCCA LI0479 587222 - 588658 + | alginate O-acetylation protein TERM 547 589335 - 589349 + G 76 -4.2 -5.14563 | overlap 589337 AGATTATTTTAATTG GCCAGA ACG TCTGAC TTTTTTAGTAAACAA LI0480 588676 - 590637 + | esterase MesA LI0481 590701 - 591078 + | hypothetical protein TERM 548 591397 - 591407 + G 82 -3.2 -5.63103 | ATCATTATTGGGGCA GCAT TAG GTGC TTTTTTTGCTTCACA TERM 549 591596 - 591586 - g 71 -3.2 -5.04597 | AGTGATATAGAAAAA CCTG AAT CAAG TCCTATCTTTAGTAA motA 591277 - 592125 + | flagellar motor protein MotA TERM 550 592674 - 592657 - g 82 -8.5 -3.91984 | opp_overlap 592657 592656 ATATTGGTGAAATAA CAAAAGG CAGC CCTTTTG CTTCTAACTGGGAAC TERM 551 592699 - 592721 + G 73 -8.5 -3.17146 | gap 1, overlap 592695 GGGAACTTTCAGGAG CTCGTGCAGC TGCA GCTGCAC-AG TATCTTGTAGAGCAC motB 592170 - 592883 + | flagellar motor protein LI0484 594616 - 592910 - | hypothetical protein LI0485 596061 - 594907 - | major facilitator superfamily permease TERM 552 596192 - 596180 - H 83 -3.5 -5.98675 | TATAAAAATAAAAAA TAATA CGA TATTA CTAACATATTGATAT motA 596408 - 597160 + | flagellar motor component motB 597267 - 597887 + | flagellar motor protein TERM 553 598295 - 598279 - g 77 -3 -5.40072 | TGTCTGTGAAAAAAA TAAGAC ATAAA GTCCTA ATTGCTAACCGAGGC accC 598269 - 599687 + | biotin carboxylase TERM 554 600120 - 600089 - g 73 -3.8 -5.0538 | TCGTAGGGGAAAAAA GACATATAACCA ATTTATTA TGGTCATAGGTC AAGAAAAAGGGCATG LI0489 599700 - 601946 + | Acetyl-CoA carboxylase alpha subunit TERM 555 602046 - 602033 - g 74 -3.1 -5.27399 | GAACATATTAAAAAA TCTCC ATAT GAAGA AGTCACTATCTCTTC LI0490 601994 - 602644 + | hypothetical protein LI0491 602649 - 602993 + | hypothetical protein LI0492 603031 - 603486 + | single-stranded DNA-binding protein glnS 605301 - 603604 - | glutaminyl-tRNA synthetase LI0494 605717 - 605340 - | hypothetical protein TERM 556 606720 - 606732 + G 77 -4.9 -5.09225 | CTACACAAAATCTTT CTAAT AAT ATTAG TTTTTTACCTGAAAT LI0495 605999 - 607135 + | glycosyltransferase TERM 557 607986 - 608002 + G 83 -8.1 -4.42386 | opp_overlap 607967 TCTGTTGGACTGACA GCTTTTT TTA AAAAAGC TTTTGTCCATCAAGG LI0496 607449 - 608588 + | branched chain amino acid ABC transporter, periplasmic amino acid-binding protein livH 608669 - 609562 + | branched chain amino acid ABC transporter, permease protein livM 609559 - 610602 + | branched chain amino acid ABC transporter, permease protein TERM 558 611037 - 611016 - g 82 -3 -5.7506 | overlap 611022 611026 GAAAAAAAAATAAAA GGACAAGC AATGGA ACTTATCC AACGCTTTAACCTTG livG 610599 - 611405 + | branched chain amino acid ABC transporter, ATP-binding protein livF 611398 - 612120 + | branched chain amino acid ABC transporter, ATP-binding protein TERM 559 612252 - 612266 + F 71 -5.8 -4.41956 | opp_overlap 612251 612254 AATAGTATCTAATAG TATCTT TTG AAGATA TTTTCATATGTATAT TERM 560 612613 - 612627 + G 75 -5 -4.89477 | TATCTTTTTTTCTTT CCTAGT AGC ATTAGG TTTTGTTATTGGAGC hppA 612389 - 614464 + | membrane-bound proton-translocating pyrophosphatase TERM 561 614499 - 614518 + T 100 -7.9 -5.42862 | opp_overlap 614499 TCCTACCTAAAAAAA TCTCTCC TAATAT GGAGAGA TTTTTTTACACCTAT TERM 562 614518 - 614499 - T 100 -7.9 -5.47218 | opp_overlap 614499 TCCTACCTAAAAAAA TCTCTCC TAATAT GGAGAGA TTTTTTTACACCTAT pabC 615940 - 614756 - | periplasmic solute-binding protein LI0503 616365 - 615937 - | endonuclease TERM 563 616727 - 616747 + H 73 -4 -5.35354 | opp_overlap 616727 TGTATGATAATCAAA CGTCCA TCCACAAAT TGGACG TTTTTTACTTATATC TERM 564 617217 - 617194 - g 82 -9.8 -3.59946 | opp_overlap 617192 617194 617197, overlap 617197 TGTGGAACTAGACAA TAAGAAAGAA AATT TTCTTTCTTA TATTCCTCGTACAAT TERM 565 617194 - 617217 + G 79 -9.8 -3.17229 | opp_overlap 617194 617197, overlap 617192 617197 TGTGGAACTAGACAA TAAGAAAGAA AATT TTCTTTCTTA TATTCCTCGTACAAT TERM 566 617214 - 617197 - g 73 -7.1 -3.93117 | opp_overlap 617194 617192 617197, overlap 617194 GGAACTAGACAATAA GAAAGAA AATT TTCTTTC TTATATTCCTCGTAC TERM 567 617197 - 617214 + G 70 -7.1 -3.72742 | opp_overlap 617197 617194, overlap 617194 617192 GGAACTAGACAATAA GAAAGAA AATT TTCTTTC TTATATTCCTCGTAC TERM 568 617777 - 617727 - g 79 -9.8 -3.33003 | opp_overlap 617732, overlap 617729 617732 CAATACAAGCAGGAA GAGAAGCATGGCTTGCAAAAACAG GAC CTGTTCTTACAGGCAAAGCTTCTG CATCTTCCCCTTTAA TERM 569 617775 - 617729 - g 91 -12.4 -3.22086 | opp_overlap 617732, overlap 617727 617732 ATACAAGCAGGAAGA GAAGCATGGCTTGCAAAAACAG GAC CTGTTCTTACAGGCAAAGCTTC TGCATCTTCCCCTTT TERM 570 617772 - 617732 - g 75 -8.3 -3.73813 | opp_overlap 617732, overlap 617729 617727 CAAGCAGGAAGAGAA GCATGGCTTGCAAAAACAG GAC CTGTTCTTACAGGCAAAGC TTCTGCATCTTCCCC thiG 617036 - 617818 + | thiazole synthase TERM 571 618184 - 618165 - g 71 -5.6 -4.50298 | GAAATCGAAAAAGAA GCTGCTGC TATT GCTGCAAC TGGGCTTAGACATAT TERM 572 618398 - 618376 - g 89 -9.3 -4.1822 | CGTTATTTCAAGAAA CATATAACG AAAAA CGTTATATG GCACTTCATACTAAG TERM 573 618913 - 618903 - g 74 -5.4 -4.78029 | opp_overlap 618901 618903 GCAATAAAAGCAAAA GGTT ATC AACC TATTTTTAAAAACTG thiH 617868 - 618959 + | thiamine biosynthesis enzyme ThiH and related uncharacterized enzymes thiF 618969 - 619589 + | thiamine biosynthesis protein ThiF LI0507 620785 - 619631 - | hypothetical protein TERM 574 620448 - 620419 - G 77 -10.1 -3.14132 | opp_overlap 620421, overlap 620421 620425 CTCTTTTGGCATCAA GAGGAATCCCTTT ACTA AAAGGGATCCCTT TATTTTCTTTATGAA TERM 575 620446 - 620421 - G 87 -12.7 -3.13403 | opp_overlap 620421, overlap 620419 620425 CTTTTGGCATCAAGA GGAATCCCTTT ACTA AAAGGGATCCC TTTATTTTCTTTATG TERM 576 620421 - 620446 + g 100 -10.5 -5.00611 | opp_overlap 620421 620419 620425 CTTTTGGCATCAAGA GGAATCCCTTT ACTA AAAGGGATCCC TTTATTTTCTTTATG TERM 577 620442 - 620425 - G 75 -8.5 -3.39449 | opp_overlap 620421, overlap 620421 620419 TGGCATCAAGAGGAA TCCCTTT ACTA AAAGGGA TCCCTTTATTTTCTT LI0508 622246 - 620873 - | multidrug resistance protein norM TERM 578 621418 - 621391 - G 75 -5 -4.98857 | gap 1, opp_overlap 621395 621396, overlap 621395 621396 ATGGAATCATAAAAA GAAGT-GCACTAA AAT TTAGTGCTATTTC ATGTCCTGCAATAAT TERM 579 621412 - 621396 - G 72 -9.5 -2.5848 | opp_overlap 621396 621395, overlap 621395 621391 ATCATAAAAAGAAGT GCACTAA AAT TTAGTGC TATTTCATGTCCTGC TERM 580 621396 - 621412 + g 79 -9.5 -3.51778 | opp_overlap 621395 621391 621396, overlap 621395 ATCATAAAAAGAAGT GCACTAA AAT TTAGTGC TATTTCATGTCCTGC TERM 581 621757 - 621739 - G 70 -3.8 -4.88228 | overlap 621753 AGGGAACATTAAAAA GAAGGCCT ATA AAACCTCC AATCATTGATGGCCT TERM 582 621841 - 621824 - G 100 -9.1 -5.34632 | AACAAAATATAAAAA GCCTGGA GTTC CCCAGGC AATAGCCCTTAAATA TERM 583 622267 - 622306 + r 70 -7.4 -3.49584 | gap 1, opp_overlap 622269, overlap 622265 622269 ACTATTTAAAGAAGA AATTAAGAGGAATGGAATA TAA TA-TCCATACCTCTTAATA TTACTATATTTTTCA TERM 584 622304 - 622269 - R 95 -10 -4.58585 | gap 1, opp_overlap 622267 622265 622269 TATTTAAAGAAGAAA TTAAGAGGAATGGA-AT ATA ATATCCATACCTCTTAA TATTACTATATTTTT TERM 585 622269 - 622304 + r 82 -10 -3.30173 | gap 1, opp_overlap 622269, overlap 622267 622265 TATTTAAAGAAGAAA TTAAGAGGAATGGAATA TAA TA-TCCATACCTCTTAA TATTACTATATTTTT LI0509 623799 - 622366 - | carbon starvation protein, membrane protein TERM 586 622597 - 622585 - G 73 -9.1 -2.79276 | overlap 622582 ACGATGGAGTAAGTA GGCTG CTG CAGCC CAAAGAACAATTGCC TERM 587 623326 - 623314 - G 76 -2.7 -5.46276 | overlap 623303 AATAGATACAAAAAA CATTG CAT CAATA CCTGTCAATTTCTCA terC 624527 - 625507 + | tellurium resistance protein TerC LI0511 626085 - 625603 - | hypothetical protein LI0512 627587 - 626142 - | sugar transferases involved in lipopolysaccharide synthesis TERM 588 627177 - 627158 - G 74 -2.1 -5.41143 | opp_overlap 627161 CATTGCCCAAAAAAA TTGTTGG TATTCC CCACCAA GATTTTCTTGAAAAA LI0513 628749 - 627646 - | glycosyltransferase TERM 589 629717 - 629707 - g 77 -3.2 -5.40625 | ATATTATATAAAAAA GAAG GCT CTCC TTTACCTCAAAATAT LI0514 628999 - 630420 + | Na+/H+ antiporter NhaD and related arsenite permeases TERM 590 630514 - 630478 - f 100 -14.1 -3.61517 | opp_overlap 630484 630512, overlap 630484 ATCTTTTCTTAATAA TGCAAAGAAATAACT CAATCAT AGTTATTTCTTTGCA AAAAAGTTTGCTAGT ispB 630795 - 631769 + | geranylgeranyl pyrophosphate synthase TERM 591 634610 - 634575 - g 76 -9.9 -2.90219 | opp_overlap 634581, overlap 634581 CAGAACTGTTATATA GTGAAACAGCAAGTA GACTCT TACTTACTGTTTCTC CAGATAATATAGCAC purL 631796 - 634774 + | phosphoribosylformylglycinamidine synthase domain-containing protein TERM 592 634787 - 634824 + T 77 -2.4 -5.98675 | gap 3, opp_overlap 634787 634802, overlap 634798 TAATAAAAGAAAAAA GACAAAAATCTCAAAGTAC TAT GTACTT--AG-TTTTTGTC TTTTTTCTTTTTATG TERM 593 634824 - 634787 - T 77 -2.4 -5.92399 | gap 3, opp_overlap 634787 634798, overlap 634802 TAATAAAAGAAAAAA GACAAAAATCTCAAAGTAC TAT GTACTT--AG-TTTTTGTC TTTTTTCTTTTTATG TERM 594 634798 - 634816 + T 88 -6 -5.41787 | opp_overlap 634787 634802, overlap 634787 AAAAGACAAAAATCT CAAAGTAC TAT GTACTTAG TTTTTGTCTTTTTTC rpoD 636629 - 634857 - | DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) TERM 595 636008 - 636032 + g 73 -4.3 -4.86385 | opp_overlap 636007 CCAGTGTACAACACT CGTCAAGTTTA AGA TAAACCTTACG TTTCTTTTTAAAAAT dnaG 638349 - 636619 - | DNA primase TERM 596 637890 - 637913 + g 78 -2.4 -5.62219 | opp_overlap 637889 637896, overlap 637892 CAAGGCGAAAATATT GAGAAATTTC ATCA GAAATTCCCC TTTTTTTCATATATT LI0519 639226 - 638759 - | hypothetical protein TERM 597 639262 - 639230 - H 100 -12.8 -3.85817 | opp_overlap 639228 639232, overlap 639232 ATGTGCCCTCATAAA GACACGGGAAGTCA CTATT TGACTCCCCGTGTA AATTAAGTCGTTACT TERM 598 639232 - 639260 + H 100 -13.2 -2.5602 | opp_overlap 639230 639232, overlap 639228 GTGCCCTCATAAAGA CACGGGAAGTCA CTATT TGACTCCCCGTG TAAATTAAGTCGTTA TERM 599 639260 - 639232 - H 100 -15.4 -3.51934 | opp_overlap 639232 639228, overlap 639230 GTGCCCTCATAAAGA CACGGGAAGTCA CTATT TGACTCCCCGTG TAAATTAAGTCGTTA TERM 600 639365 - 639354 - H 72 -3 -5.43414 | opp_overlap 639354 639348 ATTACATATAAAAAA GTAT ACAA ATAC TTTTTATTCTATGCA LI0520 639808 - 640170 + | hypothetical protein ksgA 641109 - 640294 - | dimethyladenosine transferase TERM 601 640452 - 640433 - G 76 -4.4 -5.06451 | opp_overlap 640433 640438, overlap 640434 TAGTAGTTCAAAAAA CCTATTTT TCGT AAAATAGA TTGCATTTGTTTTCT TERM 602 640617 - 640589 - G 100 -9.7 -4.91109 | opp_overlap 640589 640592 GGTTGAGGATAAAAA GAATGTGGCTTTA CAA TAAAACCCCATTC TACTTTAGCAAAGCT TERM 603 641396 - 641380 - g 77 -3 -5.52347 | AATAAAATCAAAAAA CTACTT TGGCC AAGCAG ATTATCCTATTTTTA TERM 604 642003 - 641989 - g 75 -10 -2.57294 | overlap 641988 AACAGCTATACCAAT GGAGCA ACT TGCTCC CCCTCATGCATTAGC LI0522 641246 - 642406 + | glycosyltransferase LI0523 642885 - 642466 - | hypothetical protein LI0524 643238 - 642894 - | hypothetical protein LI0525 643974 - 643246 - | flagellar basal body-associated protein TERM 605 644015 - 643994 - R 100 -8.7 -5.26875 | opp_overlap 643994 TTGCTAATTAAAAAA TGGGCAGAG TATC CTCCACCCA TTTACTTATAACTTG cheY 644440 - 644060 - | CheY-like receiver fleN 646025 - 645210 - | ATPases involved in chromosome partitioning TERM 606 645509 - 645546 + g 72 -9.5 -2.52015 | gap 1, opp_overlap 645508 645513 645521 645542, overlap 645508 645513 645520 645521 TATTAACTAAAACTC TAAAGTTATCAA-CACCA TGA TGGTGATTTATAACTTTA ATTAATGCATATGCA TERM 607 645852 - 645835 - G 71 -5.7 -4.49556 | CCCTCATGAAATAAA TGAAAAA GATT TTTTTCA GGTGACATCCCAAGC TERM 608 645929 - 645911 - G 70 -4.6 -4.67982 | CTGCATCCAATAAAA GCACTT TCTTACC AAGTGC TGCAAGACAATAGGC flhF 647129 - 646068 - | flagellar GTP-binding protein flhA 649219 - 647129 - | flagellar biosynthesis protein FlhA flhB 650381 - 649308 - | flagellar biosynthesis protein FlhB TERM 609 649360 - 649370 + g 71 -6.8 -4.08939 | opp_overlap 649360 ACACTTGCAAGTATA GCTG CGA CAGC TTTATATAGCTCTTC fliR 651222 - 650434 - | flagellar biosynthesis pathway, component FliR TERM 610 651678 - 651695 + H 100 -6.9 -6.87161 | overlap 651680 AATTGACTAAGCTGG GTGGCCT GACT AGGCCCC TTTTTTTTTTTTATG TERM 611 651680 - 651693 + H 72 -8.1 -3.34593 | overlap 651678 TTGACTAAGCTGGGT GGCCT GACT AGGCC CCTTTTTTTTTTTTA LI0533 651739 - 652329 + | transcription elongation factor nusA 652326 - 653648 + | transcription elongation factor NusA TERM 612 654594 - 654580 - g 91 -4.3 -5.8187 | TAGTGAAGAAAAAAA TGTTG ATATA CAACA AAAAGAAATCCCATC TERM 613 655319 - 655305 - g 70 -4.3 -4.68593 | TTGATCATGGAAAAA CATCA CTTCT TGATG CTATTCGAAAAACCA TERM 614 656298 - 656318 + G 75 -8.3 -3.88601 | AGTCAGACATCTTAC TTGCCTCAG CAT CTGATGCAA TTGTTATAGGTTTTA TERM 615 656447 - 656433 - g 74 -2.1 -5.50774 | gap 1, opp_overlap 656434 656435, overlap 656434 656435 TAGAAGAAATAAAAA GTGCCA TGGC TGGC-C TTCTTGCACCAATTA infB 653879 - 656764 + | translation initiation factor 2 (IF-2; GTPase) TERM 616 656772 - 656829 + F 100 -23.5 -3.0263 | opp_overlap 656772 656775 656787, overlap 656775 656787 GCTTATAGTAAATTA TAATTATAATAAAAAGGGGAAAAGA GACTGAAG TCTTTTCCCCTTTTTATTATAATTA TGTTACAAAACTGCT TERM 617 656829 - 656772 - f 100 -23.5 -2.99871 | opp_overlap 656772 656775 656787, overlap 656775 656787 GCTTATAGTAAATTA TAATTATAATAAAAAGGGGAAAAGA GACTGAAG TCTTTTCCCCTTTTTATTATAATTA TGTTACAAAACTGCT TERM 618 656826 - 656775 - f 100 -20.8 -3.6392 | opp_overlap 656772 656775 656787, overlap 656772 656787 TATAGTAAATTATAA TTATAATAAAAAGGGGAAAAGA GACTGAAG TCTTTTCCCCTTTTTATTATAA TTATGTTACAAAACT TERM 619 656775 - 656826 + F 100 -20.8 -3.65991 | opp_overlap 656775 656772 656787, overlap 656772 656787 TATAGTAAATTATAA TTATAATAAAAAGGGGAAAAGA GACTGAAG TCTTTTCCCCTTTTTATTATAA TTATGTTACAAAACT TERM 620 656814 - 656787 - f 100 -10 -5.24416 | opp_overlap 656775 656772 656787, overlap 656775 656772 TAATTATAATAAAAA GGGGAAAAGA GACTGAAG TCTTTTCCCC TTTTTATTATAATTA TERM 621 656787 - 656814 + F 100 -10 -5.24416 | opp_overlap 656787 656775 656772, overlap 656775 656772 TAATTATAATAAAAA GGGGAAAAGA GACTGAAG TCTTTTCCCC TTTTTATTATAATTA mgpa 657048 - 658046 + | exopolyphosphatase-like protein SctR 658769 - 658119 - | type III secretion system protein LI0538 659876 - 658794 - | putative translocation protein in type III secretion TERM 622 659521 - 659502 - G 70 -3.7 -4.95854 | opp_overlap 659502 GAAAAAACCTAAAAA TATTACA GGTACA TGTAATA TATTCTGTAACTTAT LI0539 660416 - 659919 - | hypothetical protein sctN 661754 - 660438 - | type III secretion system ATPase sctL 662389 - 661775 - | type III secretion system protein LI0542 663072 - 662368 - | hypothetical protein TERM 623 663018 - 663033 + g 81 -7.6 -4.29829 | TAAATTCTATTATTG CCTCAA ATAA TTGAGG TTTATTAATGATTAT nolT 663944 - 663072 - | LscJ LI0544 664335 - 663958 - | hypothetical protein LI0545 665557 - 665261 - | hypothetical protein LI0546 665820 - 666182 + | hypothetical protein LI0547 666388 - 666729 + | hypothetical protein yscV 666726 - 668828 + | putative type III secretion pore protein TERM 624 668911 - 668862 - g 86 -12.4 -2.92144 | opp_overlap 668873 668879, overlap 668873 668879 TGGAAACGACAACTA TGACATATACAGCAAAAGCACT TTATTT AGTGCTTGTGCTATCTATGCCA CCTATTCTTGTTGCA TERM 625 668900 - 668873 - g 71 -8.5 -3.07088 | opp_overlap 668873 668879, overlap 668862 668879 ACTATGACATATACA GCAAAAGCACT TTATTT AGTGCTTGTGC TATCTATGCCACCTA TERM 626 668873 - 668900 + G 71 -8.5 -2.9914 | opp_overlap 668873 668862 668879, overlap 668879 ACTATGACATATACA GCAAAAGCACT TTATTT AGTGCTTGTGC TATCTATGCCACCTA yscS 668846 - 669106 + | translocation protein in type III secretion TERM 627 669283 - 669295 + G 74 -6.3 -4.27842 | AATATTGTAACAGGT CAACT TAG AGTTG TTGTTGTTTTCTCAT TERM 628 669856 - 669866 + G 70 -4.6 -4.65512 | opp_overlap 669856 ATGCCTATAAAAAGT GCTG TTG CGGC TTTTCTCCTTATTTT yscT 669154 - 669969 + | Type III secretion component protein SctT TERM 629 670538 - 670554 + G 74 -2.2 -5.42131 | TTTAAGGGATCTAAC CCTTAG CGTTT CTATGG TTTTTTCTGTCATTG TERM 630 670800 - 670816 + G 83 -10.9 -2.96274 | opp_overlap 670800, overlap 670795 ATTGACTATGAAAAA GGAAGGA CAC TCCTTCC TGTAATTCTAGCAAA TERM 631 670816 - 670800 - g 100 -10.9 -4.77438 | opp_overlap 670800 670795 ATTGACTATGAAAAA GGAAGGA CAC TCCTTCC TGTAATTCTAGCAAA TERM 632 671025 - 671015 - g 76 -4 -5.27335 | CTCTTTAAATAAAAA TATG ATA CATA AACCTATATCTAATG yscU 669966 - 671048 + | translocation protein in type III secretion TERM 633 671480 - 671498 + F 100 -13.2 -5.24129 | opp_overlap 671480 671496 TTTGTTAAAAGGAAA GGCTCTCT GAT AGAGAGCC TTTTTTATAAAAAAG TERM 634 671498 - 671480 - f 100 -13.2 -4.19735 | opp_overlap 671480, overlap 671496 TTTGTTAAAAGGAAA GGCTCTCT GAT AGAGAGCC TTTTTTATAAAAAAG TERM 635 671751 - 671735 - f 85 -10.9 -3.16564 | opp_overlap 671734 CCTCCAGCCTATCAA CCAGGTA GTC TACCTGG GTCCTTTAGCCTCTT TERM 636 671792 - 671804 + F 85 -10.5 -3.1634 | overlap 671801 AGAACTAATCTTGAG GCGGG CTT CCCGC TTAGATGCTTTCAGC TERM 637 672409 - 672426 + F 79 -8.5 -3.6682 | overlap 672405 TCAAGGTTGCCTCCG CCTATAC TGGC GTATAGG TTTCACTGGCTCCCA TERM 638 674052 - 674064 + F 86 -9.1 -4.2354 | AGATTCTATTTCACT CCCCT TAC AGGGG TTCTTTTCACCTTTC TERM 639 674294 - 674315 + F 72 -7.3 -3.66803 | opp_overlap 674293, overlap 674299 GTCGGCCCTACAACC CCAACCAGT CGAA ACTGTTTGG TTTAGGCTCTTCCCG TERM 640 675013 - 675032 + F 72 -9.2 -2.65808 | opp_overlap 675004 675001, overlap 675010 AAAGGAGGTGATCCA GCCGCAGG TTCC CCTACGGC TACCTTGTTACGACT TERM 641 675913 - 675931 + F 72 -8.8 -2.73243 | overlap 675912 675924 AGTATCAAAGGCTGT TCCACCGT TAA GCGGTGGG CTTTCACCCCTGACT TERM 642 676133 - 676159 + F 77 -8.6 -3.57561 | overlap 676134 TCCAAAGACCTTCAT CCCTCACGCGGC GTC GCTGCGTCAGGC TTTCGCCCATTGCGC TERM 643 676134 - 676158 + F 88 -12.1 -2.74322 | overlap 676133 CCAAAGACCTTCATC CCTCACGCGGC GTC GCTGCGTCAGG CTTTCGCCCATTGCG TERM 644 678301 - 678287 - g 70 -7.2 -3.78934 | opp_overlap 678286 678284, overlap 678284 TCTTTCCTATAATAA CACTTA CTC TAAGTG CTATGCTTGTTGCAC LI0552 677116 - 681264 + | Signal transduction histidine kinase lysA 681626 - 682891 + | diaminopimelate decarboxylase LI0554 682917 - 684095 + | hypothetical protein LI0555 684290 - 685045 + | hypothetical protein TERM 645 686118 - 686104 - g 82 -8.6 -3.96148 | opp_overlap 686104 686101 TTCTCCCATTACAAA GCCAAA ATA TTTGGC TACTTACATTACCTA LI0556 685227 - 686414 + | major facilitator superfamily permease bacA 686543 - 687343 + | uncharacterized bacitracin resistance protein LI0558 688678 - 687407 - | competence protein ComGF rplM 688844 - 689278 + | 50S ribosomal protein L13 rpsI 689297 - 689689 + | 30S ribosomal protein S9 TERM 646 689735 - 689763 + F 78 -6.8 -4.68424 | gap 1, opp_overlap 689735 AACTTTTTTTAAAAA GCATCTGTACTCT TCTA AGAGC-CAGATGC TTTTTAACTAACTTA TERM 647 689763 - 689735 - f 91 -9 -4.57341 | gap 1, opp_overlap 689735 AACTTTTTTTAAAAA GCATCTGTACTCT TCTA AGAGC-CAGATGC TTTTTAACTAACTTA LI0561 689868 - 691523 + | metallo-beta-lactamase superfamily hydrolase TERM 648 692113 - 692103 - g 82 -5.4 -5.37171 | opp_overlap 692103 AATATTAAATAAAAA CTTG CCA CAAG TTATAGCTTTAAAAA TERM 649 692259 - 692249 - g 71 -5.4 -4.59511 | opp_overlap 692249, overlap 692236 AAGAGTTTTTAAAAA CTCT TGA AGAG TTAGTTCGAAATACT LI0562 691765 - 692793 + | hypothetical protein LI0563 693444 - 693085 - | hypothetical protein TERM 650 693842 - 693864 + G 76 -4.2 -5.13741 | overlap 693848 TTGGATAGTATTACT TCCATTCA AAAATCC TGGATGGA TTTTTATTGGATTAG pgpA 693561 - 694052 + | phosphatidylglycerophosphatase A and related proteins LI0565 694166 - 694642 + | hypothetical protein TERM 651 694685 - 694704 + T 95 -7.9 -5.02074 | opp_overlap 694685 CCTCCACATAAAAAA TACCGGT AGGCAA ACCGGTA TTTTTTCGGAGGTAG TERM 652 694704 - 694685 - T 100 -7.9 -5.36441 | opp_overlap 694685 CCTCCACATAAAAAA TACCGGT AGGCAA ACCGGTA TTTTTTCGGAGGTAG flgE 696847 - 694775 - | flagellar hook protein FlgE TERM 653 695671 - 695657 - G 73 -4.2 -5.01732 | overlap 695659 AATTTCTGTAAAAAA GGTGGT AGC ATCACC AACAGATCCAGCTGT LI0567 697770 - 696931 - | flagellar hook capping protein LI0568 699609 - 697783 - | flagellar hook-length control protein TERM 654 699704 - 699720 + r 72 -8.1 -3.41693 | opp_overlap 699701 ATTAGATTAAGATTC TAGGTAA CTT TTACCTA TTAATTAATACTCCA LI0569 701229 - 699820 - | ADP-heptose:LPS heptosyltransferase TERM 655 700475 - 700464 - G 72 -5.8 -4.41177 | TAGACAAATTCAAAA CAGG AGTT CCTG TCCATGCAGCCAAAT TERM 656 701121 - 701102 - G 86 -5.8 -5.41746 | gap 1, overlap 701105 AATTCTTTAAAAAAA TGAGGTTCT GCA AGAACC-CA TAAAGGATGATTTGG TERM 657 701119 - 701105 - G 75 -8.6 -3.49966 | overlap 701102 TCTTTAAAAAAATGA GGTTCT GCA AGAACC CATAAAGGATGATTT TERM 658 701400 - 701370 - H 100 -14.1 -5.47914 | AAAAACTATAAAAAA TGCCCCAGAAGGA ATATA TCCTTTTGGGGCA TCAACACTATACATT fliC 701958 - 702842 + | flagellin-like protein TERM 659 702878 - 702932 + T 74 -7.3 -3.97585 | opp_overlap 702878 702880 702882, overlap 702881 TTAAGGCAGACCAAA GACACATGGCTTGGAGGAAAGAA GTTGTTGTA TTCTTTTCTTCAAGCCATGATAC TTATTGATTTATTGT TERM 660 702881 - 702929 + T 91 -12 -3.01736 | opp_overlap 702880 702878 702882, overlap 702878 AGGCAGACCAAAGAC ACATGGCTTGGAGGAAAGAA GTTGTTGTA TTCTTTTCTTCAAGCCATGA TACTTATTGATTTAT TERM 661 702928 - 702882 - T 87 -11.1 -3.32402 | opp_overlap 702881 702878, overlap 702880 702878 GGCAGACCAAAGACA CATGGCTTGGAGGAAAGAA GTTGTTGTA TTCTTTTCTTCAAGCCATG ATACTTATTGATTTA rnc 703747 - 703046 - | dsRNA-specific ribonuclease LI0572 703881 - 704216 + | hypothetical protein TERM 662 704257 - 704304 + T 78 -7.5 -4.50583 | gap 2, opp_overlap 704270 GATGAAAACCATATT CTCTTTAAGTTAATCTAGTTCTA ATAA TATAACTAGATTAAC--AAAGAG TTTTATACTAATCTT LI0573 705160 - 704639 - | RimM protein, required for 16S rRNA processing LI0574 705403 - 705170 - | RNA-binding protein TERM 663 705466 - 705447 - R 74 -6.4 -4.4959 | GTTAAGGAATGAAAA CCATGTGT AACT ACACAAGG CAAAACTAGATATTA LI0575 707374 - 705860 - | Signal renition particle GTPase trmA 708923 - 707511 - | RNA methyltransferase LI0577 709837 - 708959 - | dTDP-glucose pyrophosphorylase TERM 664 709912 - 709922 + H 83 -4 -5.81412 | ATATTTTGACTCACA TATG ATG CATA TTTTTTTTACATAAA purH 709985 - 710578 + | AICAR transformylase/IMP cyclohydrolase PurH TERM 665 710712 - 710701 - f 72 -4.4 -5.011 | opp_overlap 710701 ACCTAAAGAACAAAA GGTT AACT AACC ATTGGTAGCCTATAT mutT 710794 - 711201 + | NTP pyrophosphohydrolases including oxidative damage repair enzymes TERM 666 711221 - 711258 + T 100 -10.2 -5.28778 | opp_overlap 711228, overlap 711222 AAATACTATAGTACT CTTATAACATAGTGTT ATAATC AACACTATGTTATAAA TTTTTTGTAGATAAT TERM 667 711222 - 711257 + T 100 -13.7 -3.76182 | opp_overlap 711228, overlap 711221 AATACTATAGTACTC TTATAACATAGTGTT ATAATC AACACTATGTTATAA ATTTTTTGTAGATAA TERM 668 711251 - 711228 - T 77 -9 -3.3197 | opp_overlap 711222 711221 ATAGTACTCTTATAA CATAGTGTTA TAAT CAACACTATG TTATAAATTTTTTGT LI0580 712312 - 711302 - | nucleoside-diphosphate-sugar epimerases LI0581 713056 - 712325 - | hypothetical protein TERM 669 712529 - 712513 - G 70 -3.7 -4.83615 | TACCTGTCATAAAAA TAACCCA ATT TGGCTTA AGATGCTGTACACCA LI0582 714246 - 713038 - | phosphopantothenoylcysteine synthetase/decarboxylase LI0583 714791 - 714243 - | hypothetical protein TERM 670 715627 - 715611 - g 83 -2.3 -5.82281 | overlap 715614 AAACATACAAAAAAA TTATTGA AGA TCAAGAA AAAGAAACATACTTA TERM 671 715730 - 715716 - g 95 -2.8 -6.41881 | opp_overlap 715726 TAGAACAAAAAAAAA TATCTG AAG CTGATA AAGCTTTCACAGAAG LI0584 715334 - 715945 + | hypothetical protein LI0585 716001 - 717314 + | DNA repair exonuclease TERM 672 717378 - 717388 + G 73 -4 -5.0432 | AAACAATTTCAAATC TTTC ACC GAAA TTTTCTATTTTTCTT TERM 673 720771 - 720794 + G 72 -6 -4.4078 | opp_overlap 720771 TTGCAAAAAAATGGA GTTGTTATGC GCTA GCAAAACAGC TTTTAATTGAAGCAA TERM 674 721159 - 721172 + G 83 -2.3 -5.83822 | TCAAGAACTTCATAT GGGGC ATCA GCTTC TTTTTTTTACATGTC LI0586 717314 - 721276 + | hypothetical protein LI0587 721958 - 721314 - | hypothetical protein TERM 675 721426 - 721440 + g 75 -8.6 -3.40299 | GTTAAAAGATTACTT GCAAGT CCT ACTTGC TTCTCGCTATAGTGA tatC 723026 - 722079 - | Sec-independent protein secretion pathway component TatC TERM 676 722709 - 722691 - G 78 -7.6 -4.08823 | opp_overlap 722686 AGCAAGATAATGAAA TAGTATAT CTG ATATACTA TAACATGTGATAAAT TERM 677 722826 - 722847 + g 85 -8.7 -4.12603 | opp_overlap 722825 ATCATCATCAGACAT TGTTGGAGG TATC CCTCCACCA TTATTGTTTCCTCCA LI0589 723421 - 723056 - | Sec-independent protein secretion pathway components guaA 725245 - 723704 - | bifunctional GMP synthase/glutamine amidotransferase protein guaB 726833 - 725358 - | IMP dehydrogenase/GMP reductase maa 727151 - 727738 + | maltose transacetylase cls 727939 - 729378 + | phosphatidylserine/phosphatidylglycerophosphate/cardiolipin synthase-like protein rnb 731842 - 729401 - | exoribonuclease R lpxK 733320 - 731866 - | tetraacyldisaccharide-1-P 4'-kinase TERM 678 732759 - 732740 - G 83 -7.9 -4.77165 | opp_overlap 732740 GCCTTGATAAGAAAA GCACTTG CATCCT CAAGTGC TTGGCTACCTTCTCT TERM 679 732787 - 732804 + g 78 -7.1 -4.44914 | TCTCCATGAGCCTGC TGGAATA ACTC TATTCCA TTGTTTTGTTAAATC TERM 680 733428 - 733462 + r 79 -10.1 -2.96822 | opp_overlap 733421 733428, overlap 733421 733425 TATAAATATAGGCAA TTGCCCAGTTTAAAG ATATC CTGAAAACTGGGCAA TAATTATGTTAATTA TERM 681 733462 - 733428 - R 85 -10.8 -3.22943 | opp_overlap 733421 733428 733425, overlap 733421 TATAAATATAGGCAA TTGCCCAGTTTAAAGA TAT CCTGAAAACTGGGCAA TAATTATGTTAATTA tpx 734009 - 733491 - | peroxiredoxin TERM 682 734896 - 734921 + G 71 -7.7 -3.53224 | TCAATAATACTTATT CTTTAGTACGT TGGG ACTTACTAAAG TTTGAACAACAACTA TERM 683 735674 - 735651 - g 83 -2.4 -5.9218 | GATAGAACAAAAAAA GTTACTATGG ATAC CCATGTTAAC CTCATCCTACATAAA LI0597 734850 - 737261 + | TPR repeat-containing protein zntA 739368 - 737302 - | cation-transporting ATPase, P-type panF 741138 - 739657 - | sodium/panthothenate symporter TERM 684 741007 - 740993 - G 79 -5.6 -5.08255 | ATTGCTAAAATAAAA CCACCC ATA GAGCGG CTTCCAATAAAGTAC LI0600 741506 - 741141 - | hypothetical protein TERM 685 743344 - 743324 - g 74 -9.1 -3.14132 | opp_overlap 743324 GGTTTTTTGCAGCAA CTGTTAGAG CAC CTCTAACAA GTATAATATTAGTAA LI0601 742192 - 743511 + | voltage-gated chloride channel family protein LI0602 743611 - 744357 + | metal dependent hydrolases TERM 686 745960 - 745974 + G 75 -7.2 -4.0921 | opp_overlap 745960 TTATACATATACACA TTCCTA TAT TAGGAA TTGTTTCAGTTTTAT LI0603 744711 - 746285 + | two-component response regulator TERM 687 746567 - 746555 - g 70 -2 -5.38326 | opp_overlap 746555 TCAATTAAATAAAAA TAGT AACCA ACTA TTTTCTGAAAAAAAT LI0604 746343 - 747425 + | PleD LI0605 748333 - 747467 - | hypothetical protein TERM 688 748348 - 748401 + r 100 -16.5 -3.82824 | opp_overlap 748361, overlap 748349 748361 TTTACTCTTCCTTAT CTTCTTTATAAAACAAGAAGACTAC TATA GTAGTCTTCTTGTTTTATAAGAAAC TTGTTATAAATACTA TERM 689 748349 - 748400 + r 100 -20 -2.89212 | opp_overlap 748361, overlap 748348 748361 TTACTCTTCCTTATC TTCTTTATAAAACAAGAAGACTAC TATA GTAGTCTTCTTGTTTTATAAGAAA CTTGTTATAAATACT TERM 690 748361 - 748388 + r 100 -15.8 -4.37658 | opp_overlap 748361, overlap 748349 748348 ATCTTCTTTATAAAA CAAGAAGACTAC TATA GTAGTCTTCTTG TTTTATAAGAAACTT TERM 691 748388 - 748361 - R 100 -15.8 -4.37092 | opp_overlap 748361 748349 748348 ATCTTCTTTATAAAA CAAGAAGACTAC TATA GTAGTCTTCTTG TTTTATAAGAAACTT LI0606 749158 - 748457 - | transcriptional regulator LI0607 751250 - 749754 - | TPR repeat-containing Zn-dependent protease TERM 692 751135 - 751124 - G 82 -4.4 -5.39755 | GAGAAGTAGAAAAAA GTAC TATA GTAC AACAAGAAAAAATAA cysS 752839 - 751382 - | cysteinyl-tRNA synthetase TERM 693 751523 - 751536 + g 73 -3.9 -5.02323 | AAGTAACTCTTCTAC TTGAT TAAC ATCAA TTTTATTTCTAATAA TERM 694 751829 - 751790 - G 72 -5.9 -4.33907 | overlap 751792 CATAAATAGTGAAAA TTGTTCATCTAACTC AGCTAAAATA GAGCTAGATGAACCA CCTGAGTCCCAAGAT TERM 695 752017 - 752043 + g 70 -2.4 -5.33866 | opp_overlap 752017, overlap 752019 ATATATCTCTAACAA TCTTAAAATTTC CAA GAGATTTTGACA TTTTTTCTGAATTTA rpiB 753368 - 752940 - | ribose 5-phosphate isomerase RpiB TERM 696 753304 - 753318 + g 75 -5 -5.00884 | overlap 753306 TCGTTATCTTGCAAT TGCTCT ATA AGAGTA TTTTTTAAAGAAAAT LI0610 753721 - 753377 - | hypothetical protein LI0611 754583 - 753798 - | hypothetical protein TERM 697 753896 - 753915 + g 84 -6.6 -5.18726 | opp_overlap 753899 753905, overlap 753899 TTTCTCTACCTTTAA CAATAAAA ACAA TTTTATTG TTTTTGTTATCAAAC TERM 698 753915 - 753905 - G 76 -4 -5.29445 | opp_overlap 753896 753899, overlap 753899 CTTTAACAATAAAAA CAAT TTT ATTG TTTTTGTTATCAAAC TERM 699 753930 - 753955 + g 70 -7 -3.80573 | opp_overlap 753930, overlap 753917 GTTTTTGTTATCAAA CAAAATTACC TTACTT GGTAGTTTTG TTTGATCATCATAAG TERM 700 754112 - 754102 - G 71 -6.8 -4.19483 | overlap 754103 TTAGACATAGATAAA GGAG ATA CTCC CTGAACCTGTTTTCC LI0612 756312 - 754591 - | TPR repeat-containing protein TERM 701 755058 - 755031 - G 82 -4.2 -5.41143 | opp_overlap 755034 755035 CACCTTTCAAAAAAA GAAGTGTTTTCT CCTC AGGAAACAATTC TAATCCTTTACTAAT TERM 702 755544 - 755562 + g 76 -7.4 -4.0371 | opp_overlap 755534, overlap 755546 TAAGATGTAGCCGTA CACTCTGG TTA CCAGAGTC TTTATCTAGCAAGTC TERM 703 755546 - 755560 + g 82 -10 -3.61232 | overlap 755544 AGATGTAGCCGTACA CTCTGG TTA CCAGAG TCTTTATCTAGCAAG sigB 757489 - 756332 - | DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) TERM 704 758114 - 758100 - H 78 -4.4 -5.38398 | overlap 758092 ATAAAAATATAAAAA TTATAT AAA ATATAA CATATGAATATAAAA TERM 705 758210 - 758190 - H 74 -2.7 -5.64873 | opp_overlap 758183, overlap 758183 TTTAATAATAAAAAA TTTATCTTT ATA AAATATAAA TAAAACAAAATTGTT LI0614 758603 - 759070 + | Thiol-disulfide isomerase and thioredoxins TERM 706 760324 - 760300 - g 72 -9.4 -2.71364 | overlap 760303 TCACTTTTTCAATTA CAAGTCCTTG GCGAA CAAGAACTTG AACGTGCCCTTACAA LI0615 759733 - 760479 + | hypothetical protein TERM 707 761743 - 761757 + G 88 -7.2 -5.0538 | opp_overlap 761743 761742 761745, overlap 761735 CACAAGCTTCTAAAC TAGGAT ATA ATCCTA TTTTTTACCCTAAGC radA 760506 - 761837 + | DNA repair protein RadA TERM 708 761849 - 761834 - f 100 -3.4 -6.82077 | ATTAAAAAAAAAAAA TTAAAA ATTA TTTTAA AATATTAGATGTATA yljA 761962 - 762291 + | hypothetical protein TERM 709 763295 - 763280 - g 75 -9 -3.35046 | CCACTTTGTCAAAGA TCGAGC TCTT GCTCGA AGGTTTCAACGAATT TERM 710 763642 - 763631 - g 74 -3 -5.25893 | opp_overlap 763631, overlap 763621 AGATAGATTAAAAAA TCTT AAAA AAGA TTTATCTTCACATAT TERM 711 764159 - 764126 - g 80 -6.9 -4.4634 | opp_overlap 764126 764128 AATGGGAATAACAAA TATGGGATTTGTATC AGAT GATACAAATACAATA TCTCATAAAGGACGC LI0618 762288 - 764534 + | ATPases with chaperone activity, ATP-binding subunit aat 764629 - 765315 + | leucyl/phenylalanyl-tRNA--protein transferase clr3 766827 - 765529 - | deacetylase TERM 712 766197 - 766220 + g 77 -9.6 -3.10589 | opp_overlap 766190 ATAAATACCCCTCAT TCCCTGTTCC TGGA GGAAGAGGGA TGTTCACGGTTTTTC LI0621 767973 - 767002 - | nucleoside-diphosphate-sugar epimerases obgE 769223 - 768129 - | GTPase ObgE TERM 713 769359 - 769336 - R 100 -7.5 -5.5353 | opp_overlap 769336 TAGATTAATAAAAAA GGAAGAAGT CATTAC ACTCCTTCC TTATTAATAAAATCC rplU 769973 - 769665 - | 50S ribosomal protein L21 TERM 714 770097 - 770087 - H 78 -2.6 -5.93809 | opp_overlap 770068 TTTTTAGAAAAAAAA TATT TTC AATA CAATAGGAAAAGAGG TERM 715 770125 - 770137 + H 73 -3.5 -5.38054 | opp_overlap 770111 770125 AGGAAAAAAAAAAGA TTTTT AGA AAAAA TTTTTATTTCTCCAA LI0624 770472 - 770777 + | GroES/HSP10-like protein TERM 716 770806 - 770796 - f 85 -5.4 -5.27938 | opp_overlap 770796 AGGCGTAAATAAAAA GATC GGT GATC TTTAATAATTTTATT TERM 717 770979 - 770959 - g 78 -10.5 -2.75844 | overlap 770958 TTTTTGATGCTAAAG CCCGTGAAA AAC TTTCACGAG GTGTAGATAAACTTG TERM 718 771376 - 771351 - g 72 -4.8 -4.7254 | ACTCGTGACCAAAAA GAAATAGCTC AAGTTG GAACCATTTC TGCAAACTCTGATAC TERM 719 771632 - 771602 - g 88 -7.7 -4.98255 | opp_overlap 771604 TTGTAATGAGAAAAA GATTACTAGCATG AAAGA CATGCTACCAATC TTAGAACAAGTTGCT groEL 770925 - 772571 + | chaperonin GroEL TERM 720 772596 - 772635 + F 100 -16 -3.57144 | gap 1, opp_overlap 772605, overlap 772605 CAGTACAACTTAGAT GTATAAAAACCCCAGAAGC AAT GCTTCCGGGGTTTT-ATAC TTTCAGCATAAAAAA TERM 721 772627 - 772605 - f 100 -15.6 -4.89852 | opp_overlap 772605 772596 TTAGATGTATAAAAA CCCCAGAAGC AAT GCTTCCGGGG TTTTATACTTTCAGC TERM 722 772605 - 772627 + F 100 -13.4 -4.61566 | opp_overlap 772605, overlap 772596 TTAGATGTATAAAAA CCCCAGAAGC AAT GCTTCCGGGG TTTTATACTTTCAGC LI0626 772698 - 773579 + | protoporphyrinogen oxidase HemK lpxC 773705 - 774619 + | UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase mutL 774694 - 776640 + | DNA mismatch repair ATPase LI0629 778213 - 776669 - | hypothetical protein secA 780802 - 778307 - | preprotein translocase subunit SecA TERM 723 779209 - 779187 - G 72 -2.6 -5.26155 | overlap 779189 AGAGAAAGATAAAAA CGTGATGATC CAG GATCACCTTG ACGCCCTGCTCGACC hypE 781964 - 780948 - | hydrogenase maturation factor TERM 724 782020 - 782004 - R 72 -8.1 -3.29958 | overlap 782002 782008 782011 GTAATAATAGTAAGA TACACTA TTG TAGTGTA CAATATAAAATACTG LI0632 783515 - 782118 - | major facilitator superfamily permease TERM 725 783727 - 783679 - R 100 -23.1 -5.09895 | opp_overlap 783684 783693 TAGTTATTGAAAAAA CGTAACTATATAAATCTATACTA AAC TAATATAGATTTATATAGTTACG TAAACAAGGTTAAGT TERM 726 783684 - 783722 + r 100 -13.6 -3.05463 | opp_overlap 783679, overlap 783693 ATTGAAAAAACGTAA CTATATAAATCTATACTA AAC TAATATAGATTTATATAG TTACGTAAACAAGGT flgM 784090 - 783773 - | hypothetical protein LI0634 784528 - 784118 - | hypothetical protein paaK 784911 - 786176 + | coenzyme F390 synthetase TERM 727 786222 - 786279 + T 100 -22.9 -4.97402 | gap 1, opp_overlap 786224 786226 786231 786234 786238, overlap 786223 786224 786226 AATTACCCACCCATA TA-TACTAAATAATAAAGAGTTTTAACT TTA AGTTAAAACTCTTTATTATTTAGTAATA TTTTTATACCTTTTA TERM 728 786223 - 786277 + T 100 -23.6 -4.08693 | opp_overlap 786224 786226 786231 786234 786238, overlap 786222 786224 786226 ATTACCCACCCATAT ATACTAAATAATAAAGAGTTTTAACT TTA AGTTAAAACTCTTTATTATTTAGTAA TATTTTTATACCTTT TERM 729 786276 - 786224 - T 100 -27.1 -2.91912 | opp_overlap 786224 786223 786222 786226, overlap 786226 786231 786234 786238 TTACCCACCCATATA TACTAAATAATAAAGAGTTTTAACT TTA AGTTAAAACTCTTTATTATTTAGTA ATATTTTTATACCTT TERM 730 786224 - 786276 + T 100 -27.1 -3.03589 | opp_overlap 786224 786226 786231 786234 786238, overlap 786223 786222 786226 TTACCCACCCATATA TACTAAATAATAAAGAGTTTTAACT TTA AGTTAAAACTCTTTATTATTTAGTA ATATTTTTATACCTT TERM 731 786226 - 786274 + T 100 -25.3 -3.05877 | opp_overlap 786224 786226 786231 786234 786238, overlap 786224 786223 786222 ACCCACCCATATATA CTAAATAATAAAGAGTTTTAACT TTA AGTTAAAACTCTTTATTATTTAG TAATATTTTTATACC TERM 732 786274 - 786226 - T 100 -25.3 -3.01119 | opp_overlap 786226 786224 786223 786222, overlap 786224 786231 786234 786238 ACCCACCCATATATA CTAAATAATAAAGAGTTTTAACT TTA AGTTAAAACTCTTTATTATTTAG TAATATTTTTATACC TERM 733 786269 - 786231 - T 100 -19.4 -3.91196 | opp_overlap 786226 786224 786223 786222, overlap 786226 786224 786234 786238 CCCATATATACTAAA TAATAAAGAGTTTTAACT TTA AGTTAAAACTCTTTATTA TTTAGTAATATTTTT TERM 734 786266 - 786234 - T 100 -16.7 -4.07595 | opp_overlap 786226 786224 786223 786222, overlap 786231 786226 786224 786238 ATATATACTAAATAA TAAAGAGTTTTAACT TTA AGTTAAAACTCTTTA TTATTTAGTAATATT TERM 735 786262 - 786238 - T 100 -13.1 -4.61162 | opp_overlap 786226 786224 786223 786222, overlap 786234 786231 786226 786224 ATACTAAATAATAAA GAGTTTTAACT TTA AGTTAAAACTC TTTATTATTTAGTAA TERM 736 786329 - 786354 + T 83 -5 -5.62219 | CGTTATTTTTACTAT TATATTTAAT TTTAAT ATTAAATATA TTTTTTTACTGTATT TERM 737 786622 - 786610 - T 80 -4.9 -5.34555 | TTATATTATAAAAAA TGTTA ATG TAACA TGAGATAGGTAAGAT TERM 738 787019 - 787053 + T 86 -10.9 -3.42996 | opp_overlap 787014 787013 AAATCAATATTTATA TCCATGAAGGCCA AGTAGAGTA TGGCTTTCATGGA TTATAATGCATAGTA LI0636 787888 - 787082 - | hypothetical protein mutM 788795 - 787956 - | formamidopyrimidine-DNA glycosylase TERM 739 788842 - 788819 - R 100 -8.3 -5.00339 | overlap 788812 ACTAATAATTAAAAA CCTTCTAAA TAAAAC TTTAGAAGG TTCAAATGACTTTTA LI0638 789181 - 788870 - | hypothetical protein TERM 740 789261 - 789277 + r 73 -3.8 -5.30155 | opp_overlap 789261 789270 CAAATGAACCATAAT GTAAAA ACATA TTTTAC TTTTTTACTTCATCA fliP 790615 - 789827 - | flagellar biosynthesis protein FliP LI0640 791090 - 790596 - | flagellar biogenesis protein fliN 791610 - 791116 - | flagellar motor switch/type III secretory pathway protein fliL 792192 - 791623 - | flagellar basal body-associated protein LI0643 793035 - 792334 - | TIM-barrel fold family protein era 794006 - 793032 - | GTP-binding protein Era htpX 795093 - 794233 - | Zn-dependent protease with chaperone function TERM 741 794640 - 794618 - G 75 -7 -4.23104 | GTAAACTGTAATAAA TTGGCAATAG AAA CTATCGCCGA ACCTATAACACTTGC LI0646 795375 - 797069 + | N-methylhydantoinase A/acetone carboxylase, beta subunit LI0647 798295 - 797066 - | hypothetical protein TERM 742 797491 - 797478 - G 95 -3.1 -6.19302 | overlap 797479 ACAGAAGAAAAAAAA CTTCC CATA GGAAA ACAAATCAAGTCAGC TERM 743 799307 - 799288 - g 89 -7.2 -5.2166 | gap 1 CAACAAGGTAAAAAA GTTCTCTGG ATA CCAG-GAAC TGATCATGCAGGCAT TERM 744 800216 - 800203 - g 73 -3.9 -5.14682 | CCAGAACAAACAAAA CTTTT TCCT AAAAG CTGGTTAAAAACTTA valS 799057 - 801705 + | valyl-tRNA synthetase TERM 745 801904 - 801889 - f 78 -3.4 -5.73672 | opp_overlap 801881 801889 801897, overlap 801881 AAATAACTAAAAAAA TTTTTA TGTA TAAAAA TATGTTATATATTAT TERM 746 801897 - 801923 + F 75 -3.2 -5.47431 | opp_overlap 801889, overlap 801889 AAAAAAATTTTTATG TATAAAAATATG TTA TATATTATTATA TTTTTTATGTATTAA TERM 747 803391 - 803376 - g 74 -6.2 -4.4846 | opp_overlap 803376 803375 803372 TAATGGAACAATAAA TGTTGA TAAT TCAACA ATTGGTTATCTTTCA LI0649 802639 - 805194 + | hypothetical protein TERM 748 805245 - 805218 - f 84 -9.2 -4.04719 | opp_overlap 805218, overlap 805204 ATTAGATATGATAAA GAGGCTTATGGA ATTA TTCACAAGCCTC TTTTATATCTATTCA TERM 749 805218 - 805245 + F 91 -9.2 -4.68124 | opp_overlap 805204 805218 ATTAGATATGATAAA GAGGCTTATGGA ATTA TTCACAAGCCTC TTTTATATCTATTCA LI0650 806068 - 808959 + | Zn-dependent peptidases, insulinase-like nadh 809068 - 810786 + | rhodanese-related sulfurtransferase LI0652 811642 - 810827 - | DNA adenine methylase LI0653 812498 - 811686 - | Zn-dependent protease with chaperone function TERM 750 812203 - 812186 - G 74 -3.3 -5.38054 | CTCTATAAACAAAAA CTGAACC ACCA GGCACAG CAAAAGCATTAACAG TERM 751 813362 - 813349 - g 85 -6.7 -5.29716 | TCAATAGAAGAAAAA GAACG TCAA CGTTC ACCAAAACCTCCTTT topA 812614 - 814878 + | zinc finger domain-containing protein gloB 814978 - 815604 + | Zn-dependent hydrolases, including glyoxylases argG 815668 - 816861 + | argininosuccinate synthase TERM 752 816900 - 816876 - f 72 -8.1 -3.35327 | opp_overlap 816876 816873, overlap 816877 816887 ATGAAACTCTCATAA CCTTATTATAA TAA TTATAATAAGA TAATTATCTCTATTC TERM 753 816899 - 816877 - f 75 -9.4 -2.60714 | opp_overlap 816876 816873, overlap 816876 816887 TGAAACTCTCATAAC CTTATTATAA TAA TTATAATAAG ATAATTATCTCTATT TERM 754 818037 - 818016 - g 77 -5.1 -5.12068 | TACATTTAATAAAAA CAAAATGGC TAGT GCCCTTTCG GATGGATACCTTAAT TERM 755 818273 - 818261 - g 74 -3.4 -5.2204 | opp_overlap 818261 TAGAACGAAGAAAAA GTAC TGGAG GTAC TGGTTATCATTCTAT argH 816949 - 818331 + | argininosuccinate lyase TERM 756 819473 - 819461 - g 72 -2.7 -5.3236 | ACAAGCTATAAAAAA TGAAT TTC ATCCA TCAATAGCAACTGCA trmU 818505 - 819497 + | tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase LI0659 819913 - 820452 + | shikimate kinase bfr 820991 - 820449 - | bacterioferritin (cytochrome b1) glmS 821433 - 823262 + | glucosamine 6-phosphate synthetase LI0662 823446 - 826448 + | hypothetical protein TERM 757 826988 - 826963 - f 78 -4.1 -5.31091 | GATAAGAAAATAAAA GAATATCCA TTACATTT TGGATACTC ATAGAATAATTACAG LI0663 828562 - 828969 + | hypothetical protein TERM 758 829032 - 829055 + F 71 -6.1 -4.45807 | TTAATCTTATTGTTG CTTACAATG CTAACA CATTGTGAG TTGTTTGTTTTCCTA LI0664 829283 - 830440 + | hypothetical protein TERM 759 830479 - 830463 - T 72 -3.1 -5.30155 | overlap 830451 TGAGTAATTAAAAAA TTAACTA CAA TAATTAA AAATAGTAAAAATAA LI0665 831484 - 830885 - | hypothetical protein LI0666 832279 - 831665 - | hypothetical protein TERM 760 832749 - 832719 - R 74 -9.2 -3.08696 | opp_overlap 832719 832721, overlap 832718 832722 ATCTAGACAAATAAC TAATTACCTTTGAT AGA ATCATAGGTAACTA TCTCCTACTATTTTC TERM 761 832746 - 832722 - R 79 -8.7 -3.67305 | opp_overlap 832721 832719, overlap 832719 832718 TAGACAAATAACTAA TTACCTTTGAT AGA ATCATAGGTAA CTATCTCCTACTATT TERM 762 833041 - 833098 + r 100 -29.1 -3.2779 | opp_overlap 833032 833055, overlap 833055 AAAAATTGATTGTAA TCAGCTGTTAAAAAGGTAGAAATATCT TGAA AGATATTCCTACCTTTTTAACAGCTGA TTACATATTTATATA TERM 763 833084 - 833055 - R 100 -13.1 -4.58663 | opp_overlap 833041 833055 ATCAGCTGTTAAAAA GGTAGAAATATCT TGAA AGATATTCCTACC TTTTTAACAGCTGAT TERM 764 833055 - 833084 + r 100 -10.9 -4.58663 | opp_overlap 833055, overlap 833041 ATCAGCTGTTAAAAA GGTAGAAATATCT TGAA AGATATTCCTACC TTTTTAACAGCTGAT TERM 765 833556 - 833527 - R 100 -10.3 -5.30616 | opp_overlap 833525 833527 833532 TCATCTAAATAAAAA TATAATCTAAGGA ATAC TCCTTAAATTATA TATTACTCATCATTA TERM 766 833527 - 833556 + r 70 -8.1 -3.18737 | opp_overlap 833527, overlap 833525 833532 TCATCTAAATAAAAA TATAATCTAAGGA ATAC TCCTTAAATTATA TATTACTCATCATTA LI0667 835044 - 833929 - | hypothetical protein LI0668 836481 - 835309 - | hypothetical protein TERM 767 835683 - 835703 + g 73 -6.9 -3.97368 | opp_overlap 835692 TTTGTCTTCCTGTCG GCTTTAAAG GCT CTTTTAAGC TTTGTGCATTCCACC TERM 768 835758 - 835739 - G 100 -6.4 -6.34424 | opp_overlap 835739 835738 TCTTTAAAAAAAAAA GCACCAAG TTTA CTTTGTGC CTCTTTAAATGCATT TERM 769 835966 - 835996 + g 73 -9.1 -2.88768 | overlap 835965 ATAAGAGCTTGCTGA GGGAGAAGCAGAT GACTG ATCTCTTTCTCCC CTTTCGCTTATAGTA LI0669 837119 - 836694 - | hypothetical protein TERM 770 837242 - 837229 - H 71 -2.5 -5.48303 | opp_overlap 837229 ATAACTGTAAAAAAA TATAT ATAT ATATA TTATTTTAATTACAT TERM 771 837604 - 837580 - H 86 -7.3 -4.90455 | opp_overlap 837572 837580 AGATACGTATAAAAA CATACAATTAA AAA TTAACTGCATG TATTTATATTACTAT TERM 772 839011 - 838994 - H 72 -4.1 -5.03314 | TTCACTTTTAAAAAA GTATAGC ACTG GCAATAC ATAACACTACACCTT TERM 773 839782 - 839772 - g 84 -5.4 -5.39755 | TATAAGGAGAAAAAA CCTT TAA AAGG CCTAAAAATTACAGG ahcY 839619 - 841052 + | S-adenosyl-L-homocysteine hydrolase serA 841336 - 842244 + | phosphoglycerate dehydrogenase and related dehydrogenases TERM 774 843868 - 843890 + G 77 -9.2 -3.29325 | opp_overlap 843871, overlap 843866 843871 GAAGAGCTGAATGAA GAAGAAAGCA TTG TGCTTTCTAC TATTCATTCTGCAAA TERM 775 843887 - 843871 - g 81 -9.5 -3.8186 | opp_overlap 843871 843868 843866 GAGCTGAATGAAGAA GAAAGCA TTG TGCTTTC TACTATTCATTCTGC TERM 776 843871 - 843887 + G 73 -9.5 -2.82156 | opp_overlap 843871, overlap 843868 843866 GAGCTGAATGAAGAA GAAAGCA TTG TGCTTTC TACTATTCATTCTGC TERM 777 844282 - 844297 + G 72 -4.8 -4.72986 | GAGTTATCTTATAGT TTTTGT CGAC ACAAAA TTTTTGGTAGAGGTA pcrA 842275 - 844410 + | superfamily I DNA/RNA helicase TERM 778 845079 - 845060 - g 83 -7.2 -4.7657 | CAAAAATGGCAAAAA GTTGGTCT CAGC AAACCAAC ACTCCTCACAGACTA TERM 779 845182 - 845158 - g 74 -5.8 -4.56914 | gap 1, opp_overlap 845159, overlap 845159 CTAGGGAAAGGAAAA GGAGCAGATAT CACC ATACCTGC-CC TTGATCATGAAATCA TERM 780 845182 - 845159 - g 70 -8.2 -3.33425 | opp_overlap 845159, overlap 845158 TAGGGAAAGGAAAAG GAGCAGATAT CACC ATACCTGCCC TTGATCATGAAATCA thiL 844426 - 845448 + | thiamine monophosphate kinase LI0674 846838 - 845474 - | hypothetical protein hflK 847108 - 848259 + | membrane protease subunits, stomatin/prohibitin homologs TERM 781 849066 - 849085 + GF 70 -7.2 -3.54488 | overlap 849063 AGAAAATACTCATAT GGTCATCA CAAA TGATGATC TATTCTTTCGCCCCA hflC 848260 - 849111 + | membrane protease subunits, stomatin/prohibitin homologs LI0677 849077 - 849838 + | hypothetical protein TERM 782 849820 - 849832 + T 72 -6.3 -4.28254 | AGGCCGGCTTGCTTG GGTTT TCC AAACC TTTTAAATATTAACA TERM 783 849924 - 849875 - T 100 -10.4 -4.68846 | gap 1, opp_overlap 849875, overlap 849869 ATTAATAAACTAAAA TTTAGTTACCCTAACAGA-ACTT CTAAT AACTATCTGCTAGGGCAACTAAA TCATATGAATGAGAT LI0678 851219 - 849897 - | 2-methylthioadenine synthetase LI0679 851253 - 852002 + | xanthosine triphosphate pyrophosphatase LI0680 852068 - 853144 + | Fe-S-cluster redox protein kdtA 854476 - 853157 - | 3-deoxy-D-manno-octulosonic-acid transferase ddlA 855389 - 854481 - | D-alanine-D-alanine ligase and related ATP-grasp enzymes TERM 784 855089 - 855068 - GR 70 -7.3 -3.61398 | opp_overlap 855068 TTTTGGGTGTAAGAA GCCCTTCTC TACG GAAAAGAGC TTTAGCTGCAGCTTT LI0683 855987 - 855346 - | hypothetical protein TERM 785 856118 - 856150 + r 100 -12.5 -3.64487 | opp_overlap 856118 856121 856124 856127 856130, overlap 856121 856124 856127 CAAGTGTCAATTTAA TAATAATAATAATAA TAA TTATTATTATTATTA TTATTAAGAATATGA TERM 786 856156 - 856118 - R 100 -15.2 -3.18199 | opp_overlap 856118 856121 856124 856127, overlap 856121 856124 856127 856130 CAAGTGTCAATTTAA TAATAATAATAATAATAA TTA TTATTATTATTATTATTA AGAATATGATTATAA TERM 787 856121 - 856147 + r 86 -9.8 -3.95324 | opp_overlap 856121 856118 856124 856127 856130, overlap 856118 856124 856127 GTGTCAATTTAATAA TAATAATAATAA TAA TTATTATTATTA TTATTATTAAGAATA TERM 788 856153 - 856121 - R 100 -12.5 -3.73068 | opp_overlap 856118 856121 856124 856127, overlap 856118 856124 856127 856130 GTGTCAATTTAATAA TAATAATAATAATAA TTA TTATTATTATTATTA TTAAGAATATGATTA TERM 789 856150 - 856124 - R 86 -9.8 -3.99494 | opp_overlap 856121 856118 856124 856127, overlap 856121 856118 856127 856130 TCAATTTAATAATAA TAATAATAATAA TTA TTATTATTATTA TTATTAAGAATATGA TERM 790 856124 - 856144 + r 73 -7.1 -4.09963 | opp_overlap 856124 856121 856118 856127 856130, overlap 856121 856118 856127 TCAATTTAATAATAA TAATAATAA TAA TTATTATTA TTATTATTATTAAGA TERM 791 856147 - 856127 - R 73 -7.1 -4.10566 | opp_overlap 856124 856121 856118 856127, overlap 856124 856121 856118 856130 ATTTAATAATAATAA TAATAATAA TTA TTATTATTA TTATTATTAAGAATA TERM 792 856390 - 856378 - R 90 -7.7 -5.06414 | overlap 856361 TTTTCCCAATAAAAA GGGAT ATC ATCCC TCCATAATAATATTT TERM 793 856573 - 856588 + r 71 -4.8 -4.86133 | TGCTTTCCCAATACT CTTTAT GCCA ATAAAG TTTTTCCTGTATGTA LI0684 857084 - 856632 - | acetyltransferase TERM 794 857356 - 857336 - R 82 -9.9 -3.35371 | TATATTTTTAATTAA TATCTTTTG AAA CAAAAGATA AAAAACACATAACGT TERM 795 857541 - 857522 - R 100 -9.2 -5.5112 | opp_overlap 857525 TGTACTAACAAAAAA GGAGGGTG GTGA CTCCCTCC TCTAAAAAACTACTT TERM 796 857617 - 857581 - R 81 -5.4 -5.1925 | overlap 857583 CTACAAGGGAAAAAA TATTTCTATATCACTA AAAAG TAGTTATATAGAAAAA CTTCCACCTGTTGAA TERM 797 857615 - 857583 - R 82 -8 -4.21792 | overlap 857581 ACAAGGGAAAAAATA TTTCTATATCACTA AAAAG TAGTTATATAGAAA AACTTCCACCTGTTG TERM 798 858365 - 858345 - R 100 -8.5 -5.3104 | opp_overlap 858345 858348 TCATTAAAAATAAAA TAATTCATT AAC AATGAATTA TAATATATCAAAAAA TERM 799 858345 - 858365 + r 70 -8.5 -2.69151 | opp_overlap 858345, overlap 858348 TCATTAAAAATAAAA TAATTCATT AAC AATGAATTA TAATATATCAAAAAA TERM 800 858554 - 858502 - R 100 -25.7 -3.35438 | opp_overlap 858502 858502 858515 858519 TATTAGACGCTATAA TAGTTATACTATATTAATACTATTA ATT TAATAGTATTAATATAGTATAACTA TTAATAAAGAAATAT TERM 801 858502 - 858554 + r 100 -25.7 -3.14683 | opp_overlap 858502, overlap 858502 858515 858519 TATTAGACGCTATAA TAGTTATACTATATTAATACTATTA ATT TAATAGTATTAATATAGTATAACTA TTAATAAAGAAATAT dnaJ 859786 - 858662 - | DnaJ-like molecular chaperone TERM 802 858840 - 858854 + g 77 -8.6 -3.61178 | CGTTTCTGCCCCACA TAAGGG AGT CCCTTA TTTGGAATGCGTAAC TERM 803 860183 - 860171 - R 71 -4.9 -4.82667 | TCATTATATCAAAAA GTTAT ATA ATAAC AACAATCATATTCTA pepA 861736 - 860201 - | leucyl aminopeptidase LI0687 863153 - 861756 - | response regulator TERM 804 861891 - 861879 - G 72 -4.9 -4.65895 | TTTTTCAGTTAAAAA TTTTG TTT CAAAA GCTATTTTAGCCTGT TERM 805 862155 - 862139 - G 74 -2.2 -5.47218 | CCTCATCTAAAAAAA TAGGCG GCTCA CGTCTA TAACGTTTACTCAAC TERM 806 865018 - 865030 + G 78 -7.7 -4.24342 | opp_overlap 865017 AATAACAGAATCCAT TGGCA TTG TGCCA TTTATTGATGGAGGA LI0688 863417 - 865222 + | Outer membrane protein TERM 807 867481 - 867468 - g 72 -2.5 -5.22312 | overlap 867458 AGGCACATTAAAAAA TTTTA ATAG TAAAA TAAATATAGCAGGAC grsT 865222 - 869370 + | hypothetical protein TERM 808 869395 - 869423 + T 91 -9.1 -4.58283 | opp_overlap 869395 TTTTATATCTAAAAA GGATATTTTGT TATTAAT ACAAAATATCC TTTTTAACAAAATTA TERM 809 869423 - 869395 - T 91 -9.1 -4.70659 | opp_overlap 869395 TTTTATATCTAAAAA GGATATTTTGT TATTAAT ACAAAATATCC TTTTTAACAAAATTA LI0690 869954 - 869436 - | hypothetical protein TERM 810 870273 - 870223 - R 100 -31.8 -3.07534 | opp_overlap 870223, overlap 870230 GATATTATATATAGA TTATAAATATAGTAGGACCTCAGC TAA GCTGAGGTCCTACTATATTTATAA TTTTCTGGTCGGAGC TERM 811 870223 - 870273 + r 100 -31.8 -4.46212 | opp_overlap 870223 870230 GATATTATATATAGA TTATAAATATAGTAGGACCTCAGC TAA GCTGAGGTCCTACTATATTTATAA TTTTCTGGTCGGAGC TERM 812 870266 - 870230 - R 100 -25.5 -4.05389 | opp_overlap 870223, overlap 870223 TATATAGATTATAAA TATAGTAGGACCTCAGC TAA GCTGAGGTCCTACTATA TTTATAATTTTCTGG pal 870899 - 870411 - | Outer membrane protein and related peptidoglycan-associated (lipo)proteins tolB 872403 - 871045 - | periplasmic component of the Tol biopolymer transport system TERM 813 871627 - 871649 + g 76 -4.1 -5.09762 | opp_overlap 871621 871620, overlap 871628 TCCTATAACCGTATT CCCAGGGAA ACGAA TTCTCTGGA TTTTATTTGTTAACC TERM 814 871628 - 871648 + g 71 -7.6 -3.64772 | opp_overlap 871621 871620, overlap 871627 CCTATAACCGTATTC CCAGGGAA ACGAA TTCTCTGG ATTTTATTTGTTAAC LI0693 873820 - 872867 - | membrane protein involved in colicin uptake exbD 874355 - 873921 - | biopolymer transport protein tolQ 875115 - 874438 - | biopolymer transport proteins rubY 875739 - 876314 + | rubrerythrin rubA 876328 - 876531 + | rubredoxin 2 (Rd-2) TERM 815 876540 - 876573 + F 100 -19.9 -5.41143 | opp_overlap 876543 TAGTTAACTTACTTA TAAGTCAAGGAGAGA AATT TCTCTCCTTGACTTA TTTTTTTAAGAAATG TERM 816 876570 - 876543 - f 100 -17.2 -3.3785 | opp_overlap 876540 TTAACTTACTTATAA GTCAAGGAGAGA AATT TCTCTCCTTGAC TTATTTTTTTAAGAA TERM 817 877454 - 877417 - g 77 -9.3 -3.16564 | gap 1, overlap 877420 TTGCTACCTTACTAA TGATTCTGGCCCCATGCA TAT TGCATGGAGCCAACAT-A CGCCTGTTACTGCTA TERM 818 877452 - 877420 - g 89 -13.5 -2.78547 | overlap 877417 CTACCTTACTAATGA TTCTGGCCCCATGCA TAT TGCATGGAGCCAACA TACGCCTGTTACTGC rfaF 876635 - 877663 + | ADP-heptose:LPS heptosyltransferase II TERM 819 877716 - 877706 - f 77 -5.4 -4.99056 | opp_overlap 877706 TAACATAACCAAAAA TTGC ATG GCAA CCTTTTTCTTCTTTC TERM 820 878102 - 878069 - g 80 -9.1 -3.53224 | gap 1 GATCGCTGTTTCAAA TCCTGTAGCTTTCTTT ATA AAAGAAA-CAACAGGA ATAAATGCTCATATA TERM 821 878684 - 878710 + G 76 -6.7 -4.6468 | gap 1, opp_overlap 878684, overlap 878679 TAATAATCACTATAA TGCTG-TCTCAA ATCT TTGGGAACAGCA TTTTATATAATTTAG LI0699 877710 - 878720 + | hypothetical protein TERM 822 878777 - 878799 + T 74 -6.3 -4.42386 | opp_overlap 878777 TTTTTATAGAAAAAA CTCTGGAAT TTTAT ATCCCAGAG TTTTATCGATACCCC TERM 823 878799 - 878777 - T 100 -8.5 -5.36441 | opp_overlap 878777 TTTTTATAGAAAAAA CTCTGGAAT TTTAT ATCCCAGAG TTTTATCGATACCCC LI0700 879499 - 878912 - | TPR repeat-containing protein uvrC 881550 - 879685 - | nuclease subunit of the excinuclease complex maf 882254 - 881559 - | nucleotide-binding protein implicated in inhibition of septum formation LI0703 882513 - 883592 + | exopolyphosphatase-like protein asnC 885042 - 883675 - | asparaginyl-tRNA synthetase TERM 824 883971 - 883983 + g 74 -3.4 -5.26247 | overlap 883976 CGTCATCATTTTGGC GCAT GTAAA ATGC TTTTATTTCTTTTGG LI0705 885795 - 885106 - | DedA family protein LI0706 889188 - 885880 - | hypothetical protein TERM 825 888455 - 888438 - G 70 -4.1 -4.7373 | overlap 888440 888449 GTAGTGCATTAAAAA TTCCATC ATAA GATGGTA GTCCCTCAAATAAAT hypF 891977 - 889587 - | hydrogenase maturation factor TERM 826 891668 - 891694 + g 82 -7.5 -4.59342 | gap 1, opp_overlap 891686, overlap 891686 TATACTGTATCCCAT CAGAGCTTTCTT CAAT AAGAAA-CTCTG TTTCTTTATCCTGAA LI0708 892189 - 893016 + | protein-disulfide isomerase TERM 827 893924 - 893912 - g 74 -6.3 -4.329 | opp_overlap 893922 893923, overlap 893914 TAATATAGGAATAAA TCCAA CTT TTGGA GATTCAATTCCTAAA ribF 893127 - 894170 + | FAD synthase fliC 894199 - 895080 + | flagellin-like protein TERM 828 895137 - 895088 - T 93 -4.6 -6.06723 | gap 2, opp_overlap 895104, overlap 895090 895096 895098 TTGGCTAAAAAAAAA TATATATATACAACGGCTCCTCTT TATT AAG-GGAGTCGTTGAA-ATATACA ATTAACTTCACTCAA TERM 829 895128 - 895098 - T 75 -9.1 -3.15593 | gap 1, opp_overlap 895104, overlap 895096 895090 895088 AAAAATATATATATA CAACGGCTCCTCTT TATT AAG-GGAGTCGTTG AAATATACAATTAAC LI0711 895730 - 895227 - | uncharacterized membrane protein, required for colicin V production TERM 830 895822 - 895804 - R 74 -7.4 -3.91027 | opp_overlap 895781, overlap 895807 TAACTATATATTAAA GTAGGCTA GAT TAGCCTTC AAATTTATACTATAT pyrD 897349 - 896405 - | dihydroorotate dehydrogenase pyrDII 898152 - 897346 - | 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases TERM 831 897953 - 897933 - G 86 -2.7 -5.82388 | AAACTTGAAAAAAAA TAACTAA TTCTTCT TTAGTTA CCCTACAGATAGAAA TERM 832 898102 - 898079 - G 86 -6 -5.44119 | CGTAGTGCAAAAAAA TGTCCTTGCA TACC TGCAAGACCA AAAGGGATATTATCA TERM 833 899497 - 899467 - g 72 -2.6 -5.22006 | opp_overlap 899488, overlap 899469 899471 899488 899491 CCATTACAACAAAAA GATATCCTAATAGA AAT TCAACTAGGACATG GACCTGGTATGTATA argJ 898390 - 899574 + | bifunctional ornithine acetyltransferase/N-acetylglutamate synthase protein TERM 834 899612 - 899602 - f 73 -4 -5.43487 | AAATTATAGAAAAAA TCTT TTT AAGA GTAATACTCTACTAG rluD 899739 - 900704 + | pseudouridylate synthases, 23S RNA-specific TERM 835 900942 - 900930 - g 75 -4.9 -4.96028 | GCTGAAAAAAAAGAA CATTA TAT TAATG GAATTGACGCTCATT gln 900834 - 901616 + | amino acid ABC transporter periplasmic protein TERM 836 901877 - 901905 + G 71 -3.2 -5.14819 | overlap 901880 TTTACTGTTGGTTTT TTAGAGGAGT CCCTATTCT ACTCCTCTTA TTTCTTTTTTACTTT glnP 901672 - 902370 + | ABC-type amino acid transport system, permease component glnQ 902381 - 903256 + | ABC-type polar amino acid transport system, ATPase component TERM 837 903418 - 903405 - g 71 -6.7 -4.11216 | opp_overlap 903405 CGTGTATTCGGAAAA CGTTG GTTA CAACG TTTAGGAAATATATT LI0719 903258 - 903944 + | ABC-type amino acid transport system, permease component TERM 838 904342 - 904328 - g 71 -8.6 -2.9914 | TACTTGTTATAGATA CTACTC AAG GAGTAG AAGCCCAAACTCTTG TERM 839 904709 - 904690 - g 90 -8 -4.86822 | AATGATATAATAAAA CTTTTTTC AACA GAAAAAAG TTACGAAATTACTCG lepA 903994 - 905814 + | GTP-binding protein LepA LI0721 906278 - 905910 - | transporter, putative TERM 840 906301 - 906291 - R 86 -4 -6.14618 | CATAAAAGAAAAAAA CTTT TGT AAAG CAATCCATTGTGTTT LI0722 908045 - 906849 - | hypothetical protein TERM 841 907581 - 907593 + g 75 -4.9 -4.88163 | AAGGCCATCAAGTGC CTTTT CTA AAAAG TTTGTTTTATCTTCA mltA 909393 - 908182 - | membrane-bound lytic murein transglycosylase TERM 842 909418 - 909408 - H 70 -4 -5.19251 | TAATAGGAATAAAAA TATG CAA CATA CACCTTCTCATACAA LI0724 909409 - 909858 + | thioesterase hisB 910928 - 910107 - | PHP family histidinol phosphatase/hydrolase TERM 843 910995 - 910967 - R 100 -9.1 -5.1675 | opp_overlap 910967 910970 GTAGTTATTAAAAAA GAATCTACTTT TATTTCT AAAGTAGATTC TTTCATAACAAATTA TERM 844 910967 - 910995 + r 81 -9.1 -3.737 | opp_overlap 910967, overlap 910970 GTAGTTATTAAAAAA GAATCTACTTT TATTTCT AAAGTAGATTC TTTCATAACAAATTA metK 912195 - 911020 - | S-adenosylmethionine synthetase TERM 845 912446 - 912459 + G 70 -8.1 -3.20307 | overlap 912445 ATTGACGTTTTTTGT GCTGC ATAT GCAGC TATTAATAGTATTCG TERM 846 912666 - 912653 - g 78 -2.4 -5.59357 | ATTACAGTAAAAAAA GCAT TCCCTC ATGC GACTGAAAAACTGGA LI0727 912401 - 912991 + | hypothetical protein lytB 912997 - 913881 + | ribosomal protein S1 cheV 913946 - 914896 + | chemotaxis signal transduction protein ugd 916287 - 914956 - | UDP-glucose 6-dehydrogenase TERM 847 915629 - 915657 + g 70 -4.6 -4.81852 | overlap 915631 TTAATAAATGAAATC TTTGTAGCTAGC ATACA GTTAGCTGCATA TTTTGTTAGTTCTGC TERM 848 915631 - 915655 + g 73 -7.2 -4.01597 | overlap 915629 AATAAATGAAATCTT TGTAGCTAGC ATACA GTTAGCTGCA TATTTTGTTAGTTCT TERM 849 916593 - 916565 - g 81 -11.1 -2.63112 | overlap 916592 AAACCTTCTATAGCA TCTCTAGCTGCAA GAT TTGCTGCTAAAGA AGCTGCCTCAAAAGC acpS 916424 - 916801 + | holo-[acyl-carrier protein] synthase hslV 916828 - 917361 + | ATP-dependent protease peptidase subunit LI0733 917632 - 918429 + | amino acid ABC transporter periplasmic protein TERM 850 918552 - 918542 - f 73 -4 -5.30189 | overlap 918532 TACAATACTAAAAAA TAGT AAC ACTA CCCTGACAATCTTAC LI0734 918588 - 919070 + | hypothetical protein TERM 851 919113 - 919127 + F 73 -3.6 -5.33124 | TTCAATCAATTTTTA TCATTG TCA TAATGA TTTTATTTTATTGTT ychB 919170 - 920087 + | 4-diphosphocytidyl-2C-methyl-D-erythritol 2-phosphate synthase prsA 920202 - 921167 + | phosphoribosylpyrophosphate synthetase LI0737 921211 - 921804 + | 50S ribosomal protein L25/general stress protein Ctc LI0738 921880 - 922485 + | peptidyl-tRNA hydrolase TERM 852 922611 - 922639 + F 85 -9.9 -3.76759 | opp_overlap 922616 922618 922626, overlap 922618 TTTATTCAGTTGCTA TAAAAGATTACTA AAT TAGTAATTTTTTA TTTACTAACATTAAT TERM 853 922618 - 922632 + F 91 -5.8 -5.68438 | opp_overlap 922618 922616 922626, overlap 922611 AGTTGCTATAAAAGA TTACTA AAT TAGTAA TTTTTTATTTACTAA TERM 854 922945 - 922930 - g 90 -4 -5.85425 | opp_overlap 922933, overlap 922931 922933 CAAATAAATAAAAAA CTATCC CCTA AGATAG GAGAATATTTATTTC LI0739 922741 - 923433 + | hypothetical protein flgF 923583 - 924377 + | flagellar basal body rod protein flgG 924392 - 925177 + | flagellar basal body rod protein FlgG LI0742 925203 - 926186 + | hypothetical protein flgH 926204 - 926896 + | flagellar basal body L-ring protein flgI 926942 - 928081 + | flagellar basal body P-ring protein flgJ 928086 - 928769 + | membrane proteins related to metalloendopeptidases LI0746 928976 - 929506 + | hypothetical protein TERM 855 930812 - 930788 - g 79 -3.7 -5.55769 | gap 1 CTGGAGAACAAAAAA TGACTTACTC TTTAGG GAGTA-GTCA AGTAAATCGTACAGA flgK 929506 - 931623 + | flagellar hook-associated protein TERM 856 931673 - 931698 + G 83 -11.3 -2.8805 | ATTCTGGCATGATCA GTCAGATGAAC AAAA GTTTATCTGAC TATATGGAGACTAAT flgL 931633 - 933210 + | flagellin-like protein LI0749 933304 - 933993 + | flagellar assembly protein FliW TERM 857 934592 - 934582 - g 90 -8.2 -4.98917 | CAAAATATAATAAAA CCCC TTG GGGG GAACCTGATATTATC TERM 858 935738 - 935771 + G 76 -9.7 -2.90219 | opp_overlap 935737 935735 TTATAGAGGGAATAC TGCATTAGATATTGC TAAT GCTATACCTAATGCA TATATAAACCTTATG LI0750 934221 - 935801 + | hypothetical protein LI0751 937368 - 935839 - | Mg chelatase-related protein LI0752 939059 - 937365 - | Sulfate transporter family protein TERM 859 939137 - 939116 - R 100 -11.7 -5.22137 | AAGTATAAAATAAAA TCCTGTACA AATT TGTACAGGA TATAAAAAACGTTAT glnP 939858 - 939166 - | ABC-type amino acid transport system, permease component glnH 940730 - 939981 - | amino acid ABC transporter periplasmic protein TERM 860 941253 - 941222 - R 100 -17.6 -4.13728 | opp_overlap 941228 941250, overlap 941228 TATATATTCTCAAAA TTAAAAGAGCTCCA TTAA TGGAGCTCTTTTAA TAACGTATATTAATT TERM 861 941228 - 941247 + r 100 -12.2 -4.27617 | opp_overlap 941228 941222 TTCTCAAAATTAAAA GAGCTCCA TTAA TGGAGCTC TTTTAATAACGTATA TERM 862 941247 - 941228 - R 100 -12.2 -4.67038 | opp_overlap 941228, overlap 941222 TTCTCAAAATTAAAA GAGCTCCA TTAA TGGAGCTC TTTTAATAACGTATA rpsA 942995 - 941271 - | 30S ribosomal protein S1 TERM 863 941318 - 941339 + g 73 -8.7 -3.31365 | overlap 941316 TTAGCAGATCTCCAA GGCTTTGAC CAGA GTCAGGGCC TGTTCTACTATACTC TERM 864 943152 - 943096 - R 75 -8.7 -3.30903 | gap 2, opp_overlap 943116, overlap 943097 943116 AAAATCTCTTTATAA TTTTTA-TT-TGTATAAAAAAAGGTTC ATTAA GAACCTTTTTTTATACATAACTAAATA TAAAATCGTAATAAT TERM 865 943150 - 943097 - R 87 -11.6 -2.5806 | gap 1, opp_overlap 943116, overlap 943096 943116 AAATCTCTTTATAAT TTTTATT-TGTATAAAAAAAGGTTC ATTAA GAACCTTTTTTTATACATAACTAAA TATAAAATCGTAATA TERM 866 943116 - 943130 + r 91 -5.7 -5.64274 | opp_overlap 943116 943097 943096 ATTTGTATAAAAAAA GGTTC ATTAA GAACC TTTTTTTATACATAA TERM 867 943130 - 943116 - R 90 -5.7 -5.61596 | opp_overlap 943116, overlap 943097 943096 ATTTGTATAAAAAAA GGTTC ATTAA GAACC TTTTTTTATACATAA rnh 943795 - 943310 - | ribonuclease HI menA 944864 - 943971 - | hypothetical protein LI0758 945602 - 944976 - | hypothetical protein menA 946513 - 945599 - | hypothetical protein TERM 868 946593 - 946570 - R 100 -2.5 -7.14698 | opp_overlap 946574, overlap 946571 AAAAAAAAAAAAAAA GTAAGAGAT ACCTTA ATCTCTTAT AAATAAAACTAGTTT TERM 869 946592 - 946571 - R 77 -6 -4.76465 | opp_overlap 946574, overlap 946570 AAAAAAAAAAAAAAG TAAGAGAT ACCTTA ATCTCTTA TAAATAAAACTAGTT tmk 947238 - 946612 - | thymidylate kinase cbf1 948281 - 947223 - | HD-superfamily hydrolase TERM 870 948056 - 948067 + g 70 -4.4 -4.74706 | opp_overlap 948056 TTACATAAGCTATAA TTCC AGTT GGAA TTTTTGGATATTCAA TERM 871 948936 - 948922 - g 76 -2.9 -5.53991 | opp_overlap 948922 TATCTATTAAAAAAA CTTTA GGAAT TAAAG TATGTGCTATGTCCA surE 948405 - 949160 + | acid phosphatase TERM 872 949662 - 949674 + G 71 -7.7 -3.66908 | ACATCTGTAATGATT GATGG TTC CCATC TTCCTTTTGAAGAAA fba 949353 - 950276 + | fructose/tagatose bisphosphate aldolase gapA 950386 - 951387 + | glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase LI0765 952311 - 951412 - | hypothetical protein TERM 873 951651 - 951629 - G 77 -4.9 -5.18561 | TAAACAGGGAAAAAA GAAGGAATA TCATG TATACCTTC CACTAAATCCCGTTC TERM 874 952011 - 951993 - G 95 -8.8 -5.08601 | TGACTCTAACAAAAA GCTCTACC ATA GGTAGTGC AAACCTAATAACTAT fmt 953336 - 952368 - | methionyl-tRNA formyltransferase TERM 875 952455 - 952441 - G 75 -7.2 -4.15669 | AATGTATAAATTAAA TAAGGA ACA TCCTTA CAAGCAATAGCAATA TERM 876 952865 - 952892 + g 70 -4.2 -4.67755 | gap 1, overlap 952865 TAGGAATCTCTTCAT GGG-TAAACATAG CTC CTGTGTCTAACCC TTTTTCCATACGTAT def 953848 - 953333 - | N-formylmethionyl-tRNA deformylase nifr3 954008 - 955000 + | tRNA-dihydrouridine synthase LI0769 955769 - 955017 - | hypothetical protein LI0770 956341 - 955760 - | 5-formyltetrahydrofolate cyclo-ligase TERM 877 957394 - 957375 - g 72 -5.1 -4.78848 | TTTTCAAACAGAAAA GTCTATT TCTAGT AATAGAC ACAATAGCAATAATA rne 957340 - 959340 + | ribonucleases G and E LI0772 959344 - 959937 + | hypothetical protein kefC 961946 - 959970 - | Kef-type K+ transport systems, membrane components TERM 878 962123 - 962105 - H 74 -2.5 -5.64421 | ACCTTAAATAAAAAA TAAGAAA AAATA TCTCTTA ATAAAAAAAAAAGAA trkA 962215 - 963630 + | potassium transporter peripheral membrane component trkH 963721 - 965187 + | Trk-type K+ transport systems, membrane components TERM 879 965639 - 965612 - g 70 -4.2 -4.71426 | opp_overlap 965619, overlap 965615 CGCTCACCAATAAAA GGACAAATTGAA GCAA TTCAATATGTAC AAGGTCACTTTCTTA psd 965279 - 965941 + | phosphatidylserine decarboxylase TERM 880 966302 - 966317 + G 73 -4 -5.06961 | ACAATTTGGTAAACT TGGGAT TTGT ATCTCA TTTCTTTTTATTGCT LI0777 966003 - 966752 + | phosphatidylserine synthase nth 967460 - 966810 - | endonuclease III, putative cutA 967580 - 967900 + | divalent cation tolerance protein, TERM 881 968252 - 968238 - g 85 -8.6 -4.15577 | GTAATAACCAAATAA CAGGAT TTT ATCCTG CAGCTATGAACTTCC fruK 967901 - 968842 + | ribokinase family sugar kinase TERM 882 969220 - 969202 - g 95 -3.9 -6.5058 | overlap 969204 ATAAAGAAAAAAAAA TAGCTAT AACAA ATAGCCA CCAAATATACAATAA TERM 883 969218 - 969204 - g 73 -4.3 -4.84881 | overlap 969202 AAAGAAAAAAAAATA GCTAT AACAA ATAGC CACCAAATATACAAT LI0781 969129 - 970853 + | 5-enolpyruvylshikimate-3-phosphate synthase thiD 970873 - 971706 + | hydroxymethylpyrimidine/phosphomethylpyrimidine kinase TERM 884 971809 - 971780 - T 100 -11.6 -4.40526 | opp_overlap 971780 971777 971776 971782 TATATAAAAAGTAAA CAGGGAAAGAAA TATATT CTTCTTTCCCTG TAGTATATTAATCCT TERM 885 971780 - 971809 + T 82 -10.9 -2.77416 | opp_overlap 971780, overlap 971777 971776 971782 TATATAAAAAGTAAA CAGGGAAAGAA ATATATTC TTCTTTCCCTG TAGTATATTAATCCT LI0783 972975 - 972160 - | hypothetical protein gyrA 975491 - 973029 - | Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit TERM 886 975185 - 975203 + g 76 -9.6 -2.78596 | overlap 975187 AGCCAAAATTGCCCT GACCTTCT TCA AGAGGGTC TCTCATAGAAAAATC gyrB 978009 - 975610 - | Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit TERM 887 977688 - 977700 + g 82 -7.7 -4.46212 | CATTATCAAATTTTC CTCCA GCA TGGAG TTTTGTCATAACAAC dnaN 979193 - 978042 - | DNA polymerase sliding clamp subunit (PCNA homolog) TERM 888 978422 - 978412 - G 74 -5.4 -4.68103 | opp_overlap 978412, overlap 978388 TGAAGTTTAAGAAAA GACA TAT TGTC TCCTGTTAGTCGAGT TERM 889 978605 - 978619 + g 76 -4.3 -5.16572 | opp_overlap 978605, overlap 978595 TTTTAGGAATAAGTA TTCCT TCACT AGGAA TTTTTTCACTTAACT dnaA 980636 - 979314 - | ATPase involved in DNA replication initiation TERM 890 979609 - 979631 + g 77 -10 -3.02096 | ATAATGATAAGTTGT GGAGAAATAG ATG TTATTTCTCC TGTCTGCTTAATAAG LI0788 980888 - 982222 + | membrane proteins related to metalloendopeptidases queA 982255 - 983355 + | S-adenosylmethionine:tRNA-ribosyltransferase- isomerase (queuine synthetase) TERM 891 983503 - 983546 + F 79 -9.2 -3.53563 | opp_overlap 983508 983514, overlap 983518 CTGCAGATTTACTTT CTAAAGTATAATAAGTATCT TTCT AGATATTTATTATACTACAG TTTACAAGCCGATAT TERM 892 983541 - 983508 - f 84 -9.9 -3.55761 | opp_overlap 983503 983518, overlap 983514 GATTTACTTTCTAAA GTATAATAAGTATCT TTCT AGATATTTATTATAC TACAGTTTACAAGCC TERM 893 983676 - 983698 + F 86 -5 -5.66868 | overlap 983674 983675 983678 983689 CACCCTTCCCTAATT TTTCTAAAAA CTT TTTTTAGATA TTTTTTTAATTAATT TERM 894 983678 - 983696 + F 78 -7.6 -4.45473 | overlap 983674 983675 983676 983689 CCCTTCCCTAATTTT TCTAAAAA CTT TTTTTAGA TATTTTTTTAATTAA TERM 895 983820 - 983847 + F 100 -10.2 -5.30448 | TAGATAACTATTTGA TATTGTTAAAAA AATA TTTTTAACAATA TTTTTCTGTTTATTT TERM 896 984450 - 984480 + G 73 -9 -3.21934 | overlap 984449 GAAATCCCAGAAATG CTTTCCCACTTACT TCC AGAGAGTGGGGGAG ATTTTGTACAAGCAG vorB 984330 - 985391 + | 2-ketoisovalerate ferredoxin reductase porB 985391 - 986194 + | ferredoxin oxidoreductases, beta subunit porB 986196 - 986738 + | ferredoxin oxidoreductases, gamma subunit TERM 897 987813 - 987844 + G 76 -4.4 -5.14698 | opp_overlap 987812 987813, overlap 987814 AAAGGATTTGAAAAT GGTTCTCCAGTAAC TGAT GTTAGTGGTGAACA TTTTGTTTTAACTTT TERM 898 987814 - 987843 + G 71 -7.9 -3.66379 | opp_overlap 987812 987813, overlap 987813 AAGGATTTGAAAATG GTTCTCCAGTAAC TGAT GTTAGTGGTGAAC ATTTTGTTTTAACTT TERM 899 988254 - 988219 - g 89 -9.2 -4.15703 | overlap 988201 988220 988246 TGCTAGAAACAAGAA TTGAACGAATATTAGG AGAT CATAATATTCGTTCAC AACAAACGGTGCAGG TERM 900 988253 - 988220 - g 87 -12.7 -3.08699 | overlap 988201 988219 988246 GCTAGAAACAAGAAT TGAACGAATATTAGG AGAT CATAATATTCGTTCA CAACAAACGGTGCAG LI0793 987288 - 988580 + | FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor) clpP 988737 - 989366 + | protease subunit of ATP-dependent Clp proteases clpX 989642 - 990895 + | ATP-dependent protease ATP-binding subunit TERM 901 992033 - 992012 - g 70 -4.5 -4.82678 | opp_overlap 992016, overlap 992006 CTAGAAAAACCAAAA CAACGTATT TTAG AATACCTTG CTGTACAAAAACTTA TERM 902 992150 - 992109 - g 77 -10.1 -2.99543 | opp_overlap 992113, overlap 992108 992106 GAGTAGGAAAAACAT CTTTAGCACGCTCTGTAGC TAAG GCTACAGAGCGTGAGTATG TCAGGTTGTCCCTTG TERM 903 992113 - 992146 + G 89 -13.9 -2.92653 | opp_overlap 992109 992108 992106 AGGAAAAACATCTTT AGCACGCTCTGTAGC TAAG GCTACAGAGCGTGAG TATGTCAGGTTGTCC lon 990983 - 993436 + | ATP-dependent protease LI0797 993847 - 993461 - | hypothetical protein LI0798 994282 - 995271 + | hypothetical protein LI0799 995916 - 995278 - | hypothetical protein LI0800 996681 - 995965 - | hypothetical protein TERM 904 997230 - 997217 - g 78 -2.4 -5.67063 | opp_overlap 997217 TGTATCATAAAAAAA TCTG ATAAGA CAGA CTTTGTGTTTGCAAC glmU 996842 - 998215 + | N-acetylglucosamine-1-phosphate uridyltransferase TERM 905 999375 - 999357 - g 70 -2.4 -5.39407 | CACAAAAAAAAGAAA TTTTGCTC CAG GGACAAAA TGAAATTTTTAATCA TERM 906 1000375 - 1000361 - g 79 -3.6 -5.53991 | GAGTTAGCAAAAAAA TTCAAT GAA ACTGAA GAGATTGTTCATGCA LI0802 999188 - 1000750 + | HD superfamily hydrolase TERM 907 1000942 - 1000914 - g 77 -9.7 -3.12138 | opp_overlap 1000912 1000914 1000915 1000917, overlap 1000912 1000910 1000917 GAAAAAGTATATAGA GCACTTTGTGAAA AAA CTTCACAAAGTGA TATTGTAGAATCTTC TERM 908 1000914 - 1000942 + G 73 -9 -3.25079 | opp_overlap 1000914 1000912 1000910 1000917, overlap 1000912 1000915 1000917 GAAAAAGTATATAGA GCACTTTGTGAA AAAAC TTCACAAAGTGA TATTGTAGAATCTTC TERM 909 1000915 - 1000941 + G 86 -12.5 -2.54566 | opp_overlap 1000914 1000912 1000910 1000917, overlap 1000914 1000912 1000917 AAAAAGTATATAGAG CACTTTGTGAA AAAAC TTCACAAAGTG ATATTGTAGAATCTT TERM 910 1000917 - 1000939 + G 73 -9.3 -2.8055 | opp_overlap 1000914 1000912 1000910 1000917, overlap 1000915 1000914 1000912 AAAGTATATAGAGCA CTTTGTGAA AAAAC TTCACAAAG TGATATTGTAGAATC TERM 911 1000939 - 1000917 - g 75 -10 -2.74886 | opp_overlap 1000917 1000915 1000914 1000912, overlap 1000914 1000912 1000910 AAAGTATATAGAGCA CTTTGTGAAA AAA CTTCACAAAG TGATATTGTAGAATC TERM 912 1001494 - 1001508 + G 84 -3.6 -5.75342 | TTATAGAGACTGCTG CTTTTT CTG AAGAAG TTTTTTTTAGAAAGA LI0803 1000833 - 1001591 + | hypothetical protein LI0804 1002140 - 1001682 - | hypothetical protein LI0805 1002810 - 1002133 - | hypothetical protein menE 1003953 - 1002865 - | O-succinylbenzoic acid--CoA ligase TERM 913 1003229 - 1003245 + g 73 -3.7 -5.15381 | overlap 1003230 TTTACTTCAGCAATA TCATTTG TAA CAAGTGG TTTTTTACATATGTT TERM 914 1003734 - 1003748 + g 90 -3.6 -5.81412 | overlap 1003735 ATGTTAAATAAGCAC TTTGTA GCA TACAAG TTTTTTTTACATGGA TERM 915 1003841 - 1003867 + g 100 -10.4 -4.26602 | opp_overlap 1003841 1003840, overlap 1003838 1003849 CATTCCTTAAGAAAT TGAAAAAGTTCA CTT TGAATTTTTTCA TTCTTGTTGTTTTTT TERM 916 1003849 - 1003859 + g 76 -4 -5.39221 | opp_overlap 1003841 1003840, overlap 1003841 1003838 AAGAAATTGAAAAAG TTCA CTT TGAA TTTTTTCATTCTTGT menB 1004873 - 1004052 - | naphthoate synthase comA 1005317 - 1004883 - | putative hydrolase, haloacid dehalogenase-like hydrolase TERM 917 1005067 - 1005087 + g 81 -8.4 -4.08945 | TGGTTCCCACTAACT TGAATTCC ACATG GGAATTCA TTTTCAAGACATAAT TERM 918 1005419 - 1005437 + r 86 -4.7 -5.63517 | TATTATTAGGTCTAG TTTTTCA ATAAC TGAAAAA TTTTTTATTTGGAAA TERM 919 1005499 - 1005474 - R 100 -12.7 -4.87807 | opp_overlap 1005470 1005468, overlap 1005497 TTAATATAGTAAAAA GCCTCTACAGT TAAA ACTGTAAAGGC TTAAGATTTTCTGGA TERM 920 1005544 - 1005560 + r 75 -9.5 -2.62616 | opp_overlap 1005556 TTGAACTCCAGACCT GCTGATT ACG AATCAGC TGCTCTACCAACTGA LI0809 1006062 - 1005673 - | hypothetical protein LI0810 1006385 - 1007098 + | integral membrane protein, interacts with FtsH TERM 921 1007080 - 1007100 + T 77 -4.7 -5.1286 | overlap 1007085 AATGATGTTAAGACT TATGGGCGA TCG TCGCTAATA TTTTTATAATTTTTA TERM 922 1007122 - 1007153 + T 100 -14.8 -4.88407 | opp_overlap 1007125 TAATTTTTATTTATG TAAGGCTTTTATTA AGAA TAATAAAAGCCTTA TTTTTAGTTAGATAA TERM 923 1007150 - 1007125 - T 91 -12.1 -3.07816 | opp_overlap 1007122 TTTTTATTTATGTAA GGCTTTTATTA AGAA TAATAAAAGCC TTATTTTTAGTTAGA pit 1008167 - 1007157 - | phosphate/sulphate permeases LI0812 1008795 - 1008160 - | hypothetical protein TERM 924 1008907 - 1008927 + H 74 -6.3 -4.50106 | TTCATTAGTTATTTT TTGAAATAG ATA CTATTTTAA TTGTTATTTTTTTAT TERM 925 1009333 - 1009345 + H 83 -4.9 -5.63103 | TATTTTTTTGTCGAG TATAG AGC CTATA TTTTTTTGATTAAAA TERM 926 1009372 - 1009393 + H 70 -5.3 -4.72497 | opp_overlap 1009372 1009363 1009361 AAAACATTAATATAT CTATTTATA GTTA TATGAATAG TTTTATTAATAACTA rluD 1010184 - 1011809 + | pseudouridylate synthases, 23S RNA-specific TERM 927 1011864 - 1011879 + F 100 -6.2 -5.65496 | CTCTCTCTCTCTCTC TGTTTC ATGT GAAACA TTTTTATTTTTACTA soj 1012019 - 1012804 + | ATPases involved in chromosome partitioning spo0J 1012884 - 1013843 + | transcriptional regulator TERM 928 1014418 - 1014430 + G 71 -6.3 -4.26938 | overlap 1014416 TTTGAAAAATATGTA TCTCA ACA TGAGA TTATTATTTTATCAG LI0816 1013959 - 1014996 + | ADP-heptose synthase, bifunctional sugar kinase/adenylyltransferase hemN 1016197 - 1015004 - | coproporphyrinogen III oxidase-like protein TERM 929 1015115 - 1015131 + g 70 -3.8 -4.94222 | TAATGGTGTAAGTTT TAGATA ATTAC TATCTA TTTTTATAAGTTGTT TERM 930 1015152 - 1015169 + g 77 -5.7 -4.90455 | ATAAGTTGTTCTTTT TCTAATT TGAA AATTAGA TTTTTATAGCTATCT TERM 931 1015171 - 1015190 + g 70 -4.4 -4.69962 | overlap 1015172 ATTTGAAAATTAGAT TTTTATAG CTAT CTATAAAG TTATTTTTTGCTATA TERM 932 1016465 - 1016481 + H 77 -5.1 -4.93756 | TTAATATAGTTTTAT CCCCT TCCCTTT AGGGG TATTTTTTTTTTTAG TERM 933 1016688 - 1016669 - g 83 -2.2 -5.85737 | gap 1 AGAGTAATAAAAAAA TTACCAACA TTG CGT-GGTAA AAATATTATACTATT pyrB 1016534 - 1017481 + | aspartate carbamoyltransferase catalytic subunit pyrC 1017493 - 1018764 + | dihydroorotase-like protein LI0820 1019642 - 1018869 - | 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) miaB 1019930 - 1021303 + | 2-methylthioadenine synthetase TERM 934 1021512 - 1021531 + G 70 -3.6 -4.94992 | overlap 1021510 1021509 GGGTTATTACCATCA GAAGCA TTAGCTTT TGCTTC TTTTTCTGGATTTAA LI0822 1021458 - 1022141 + | PHP family histidinol phosphatase/hydrolase TERM 935 1022712 - 1022733 + G 76 -6.7 -4.61482 | TGGAGAGAGTGAAGC TTCTGTTTC TTGG GAAATAGAA TTATTTTTTAGAAAA TERM 936 1022791 - 1022813 + G 72 -9.2 -2.74999 | opp_overlap 1022803, overlap 1022781 1022788 AGTATTGTTGCATCT GGAGGTAATG CAG CATTACCTCA TGCTATTCCAAGTTC TERM 937 1023026 - 1023045 + G 76 -3.7 -5.26918 | opp_overlap 1023024, overlap 1023024 1023023 TGTTAGCAAAAGATG TGTATAA CACAGT TTATACA TTTTTTATAGAATAT pepQ 1022176 - 1023267 + | Xaa-Pro aminopeptidase TERM 938 1023453 - 1023438 - g 89 -9 -4.53475 | opp_overlap 1023436 1023435 1023438, overlap 1023435 AGTGCACAAAAAGAA GTTGGC CACG GCCAAC TAGTTTCATTTGGTT TERM 939 1023438 - 1023453 + G 71 -9 -3.08604 | opp_overlap 1023438 1023435, overlap 1023436 1023435 AGTGCACAAAAAGAA GTTGGC CACG GCCAAC TAGTTTCATTTGGTT TERM 940 1023469 - 1023489 + G 77 -5.6 -4.98672 | TAGTTTCATTTGGTT TAGATTTA AATCC TAAATCTA TTTTGTATTTTTGGA LI0824 1023291 - 1024349 + | glycosyltransferase TERM 941 1025038 - 1025051 + G 72 -5.9 -4.36366 | overlap 1025039 CGTATAGGATATTTA GCCCT TTTA GGGGC TTTATATATTTTGTG LI0825 1024378 - 1025664 + | Lipid A core-O-antigen ligase and related enzymes rpmB 1025888 - 1025679 - | 50S ribosomal protein L28 TERM 942 1027902 - 1027918 + G 71 -6.5 -4.1552 | opp_overlap 1027902, overlap 1027904 AGCTCAACAAATGGA TTGGAGC ATA GCTCCTA TTTATTGGGAAAATG TERM 943 1027904 - 1027916 + G 80 -9.1 -3.6761 | opp_overlap 1027902, overlap 1027902 CTCAACAAATGGATT GGAGC ATA GCTCC TATTTATTGGGAAAA LI0827 1026067 - 1028082 + | lipoprotein gpsA 1029172 - 1028105 - | glycerol-3-phosphate dehydrogenase potA 1029763 - 1030869 + | putrescine/spermidine ABC transporter ATPase protein TERM 944 1031065 - 1031084 + G 83 -2 -5.80003 | ATGGGATTCTATTTG GTTAGCTC TTAT GAGCACAC TTTTTTGTTTATTGG potB 1030856 - 1031740 + | ABC-type spermidine/putrescine transport system, permease component I potC 1031740 - 1032516 + | spermidine/putrescine ABC transporter membrane protein potD 1032574 - 1033626 + | spermidine/putrescine-binding periplasmic protein TERM 945 1033645 - 1033703 + T 100 -33.2 -3.36515 | opp_overlap 1033645 1033646 1033662, overlap 1033646 1033662 TCTATTTATTATAAA TTCTTTAACCTAAAAAAGATGACTTCTC TAA GAGAAGTCATCTTTTTTAGGTTAAAGAG TGTTTGCAGCTAGAA TERM 946 1033703 - 1033645 - T 100 -31 -3.97947 | opp_overlap 1033645 1033646 1033662, overlap 1033646 1033662 TCTATTTATTATAAA TTCTTTAACCTAAAAAAGATGACTTCTC TAA GAGAAGTCATCTTTTTTAGGTTAAAGAG TGTTTGCAGCTAGAA TERM 947 1033702 - 1033646 - T 100 -34.5 -2.98447 | opp_overlap 1033645 1033646 1033662, overlap 1033645 1033662 CTATTTATTATAAAT TCTTTAACCTAAAAAAGATGACTTCTC TAA GAGAAGTCATCTTTTTTAGGTTAAAGA GTGTTTGCAGCTAGA TERM 948 1033646 - 1033702 + T 100 -34.5 -2.61695 | opp_overlap 1033646 1033645 1033662, overlap 1033645 1033662 CTATTTATTATAAAT TCTTTAACCTAAAAAAGATGACTTCTC TAA GAGAAGTCATCTTTTTTAGGTTAAAGA GTGTTTGCAGCTAGA TERM 949 1033662 - 1033686 + T 100 -15.9 -5.15969 | opp_overlap 1033662 1033646 1033645, overlap 1033646 1033645 CTTTAACCTAAAAAA GATGACTTCTC TAA GAGAAGTCATC TTTTTTAGGTTAAAG TERM 950 1033686 - 1033662 - T 100 -15.9 -5.15969 | opp_overlap 1033646 1033645 1033662, overlap 1033646 1033645 CTTTAACCTAAAAAA GATGACTTCTC TAA GAGAAGTCATC TTTTTTAGGTTAAAG LI0833 1035070 - 1033802 - | hypothetical protein TERM 951 1034731 - 1034742 + g 73 -4.4 -4.84359 | opp_overlap 1034736, overlap 1034734 TAAACTGTTCTCTTA TAGC ATCT GCTA TTTTTATAGCAGTAG TERM 952 1035015 - 1035031 + g 83 -5.1 -5.42458 | opp_overlap 1035015 GTTGTTTGAAGCATA CCTGATA CAG TTTCAGG TTTATTTTTTTTATT LI0834 1035533 - 1035090 - | hypothetical protein LI0835 1036222 - 1035578 - | hypothetical protein TERM 953 1036431 - 1036407 - H 100 -8.9 -5.35459 | opp_overlap 1036413, overlap 1036413 1036428 ATATATTACAAAAAA TAAAAATTTTT ATT AAAAATTTTTA CTATAAAGAGTGCGT TERM 954 1036425 - 1036413 - H 79 -3.5 -5.8096 | opp_overlap 1036413, overlap 1036407 TACAAAAAATAAAAA TTTTT ATT AAAAA TTTTTACTATAAAGA TERM 955 1036642 - 1036626 - g 90 -3.7 -5.90981 | opp_overlap 1036627, overlap 1036627 GCACAGCAAAAAAAA CTTTCTG TAG CAGAAAT TTTAGGAGAGGCTGG TERM 956 1036627 - 1036641 + G 73 -7.2 -4.07885 | opp_overlap 1036626 1036627 CACAGCAAAAAAAAC TTTCTG TAG CAGAAA TTTTAGGAGAGGCTG TERM 957 1036641 - 1036627 - g 75 -7.2 -4.12962 | opp_overlap 1036627, overlap 1036626 CACAGCAAAAAAAAC TTTCTG TAG CAGAAA TTTTAGGAGAGGCTG LI0836 1036458 - 1037198 + | transcriptional regulator TERM 958 1038692 - 1038707 + G 74 -6.2 -4.60487 | opp_overlap 1038703, overlap 1038702 GATGATGTTATTGTT GGATAT GAAA ATATCC TTTTTAAGGATAATA TERM 959 1038719 - 1038703 - g 83 -8.1 -4.34402 | opp_overlap 1038692 1038702 TGTTGGATATGAAAA TATCCTT TTT AAGGATA ATACATTAGAACAAA TERM 960 1039627 - 1039597 - g 76 -4.2 -5.02715 | ATATGAAATTAAAAA CCTTAAACAAATTT TTA AAATTTATTTGAAG CAGTTAGAAAAAATA LI0837 1037498 - 1040206 + | hypothetical protein murA 1041496 - 1040246 - | UDP-N-acetylglucosamine enolpyruvyl transferase xthA 1042558 - 1041779 - | exonuclease III LI0840 1043369 - 1042878 - | hypothetical protein TERM 961 1043299 - 1043289 - G 71 -5.4 -4.58663 | opp_overlap 1043289, overlap 1043292 AGTACTCCCCAAAAA TGAG AGA CTCA TTTCTCCAAAGGCAT TERM 962 1043923 - 1043872 - R 71 -6.8 -3.89957 | overlap 1043873 1043903 TTTAAGAATTAATAA CTAAGTCCAATAGGATCCTAGT AGTCAAAA ATAAGGATCTTATTGGACTTAA AATGCTTAAATTACA LI0841 1044681 - 1043947 - | putative invasin TERM 963 1044049 - 1044062 + g 74 -5.3 -4.6635 | TCCTAATGGTAGGAG GTCAA CTAT TTGAC TTTTATTCCAGCTTT TERM 964 1044220 - 1044247 + g 83 -6.4 -4.85782 | gap 1, overlap 1044222 TACTTTGATATCGTA GCCTAA-GCTATC TAT GATAGCATTAGAC TTTGTTTTTACACCA TERM 965 1044474 - 1044488 + g 78 -2.1 -5.64274 | overlap 1044468 CAGCTAATGCTCCCC CAGGA AGTGA TTCTG TTTTTTTATGGCTAA TERM 966 1044807 - 1044791 - H 80 -8.1 -4.08571 | TTACAATAGGATAAA TTACCTT AAT AAGGTAA AAGAATTATATTGAC TERM 967 1045052 - 1045104 + H 100 -14 -3.51478 | gap 1, opp_overlap 1045071, overlap 1045050 1045057 TCATTGTAATTTTTA TTTTAGTTAGATAGTAATAGTAAGA ATCA TCTTAC-ATTACTATCTAACTGTAA TTAGTTCTGTCATCT TERM 968 1045057 - 1045099 + H 100 -16.1 -2.98758 | gap 1, opp_overlap 1045071, overlap 1045052 1045050 GTAATTTTTATTTTA GTTAGATAGTAATAGTAAGA ATCA TCTTAC-ATTACTATCTAAC TGTAATTAGTTCTGT TERM 969 1045165 - 1045202 + H 80 -9.7 -3.34895 | gap 1, opp_overlap 1045164 1045165 1045167 1045176, overlap 1045173 1045175 CAGTCTAAAAGACAT TATTATAATAA-TATTAC CTA GTAATAGTTATTATAATA TTCATTACCAGTGGA TERM 970 1045202 - 1045165 - H 75 -9.7 -2.64337 | gap 1, opp_overlap 1045165 1045173 1045175, overlap 1045164 1045167 1045176 CAGTCTAAAAGACAT TATTATAATAA-TATTAC CTA GTAATAGTTATTATAATA TTCATTACCAGTGGA TERM 971 1045446 - 1045431 - H 82 -10.4 -2.79842 | opp_overlap 1045431, overlap 1045428 AATAGCCAGGAAGGA GGGGAG TGAG CTCCCC TTTATTTATGCCTGT TERM 972 1045431 - 1045446 + H 100 -10.4 -4.58085 | opp_overlap 1045431 1045428 AATAGCCAGGAAGGA GGGGAG TGAG CTCCCC TTTATTTATGCCTGT katE 1045546 - 1047813 + | hydroperoxidase II TERM 973 1047844 - 1047868 + F 74 -7.2 -3.97983 | opp_overlap 1047844 1047847, overlap 1047840 1047847 TAAGTAACTGCTAAA GAGCTCTCTT TTTAT AAGGGAGTTC TTGTATATTTTTTTA TERM 974 1048081 - 1048062 - f 76 -6.6 -4.65584 | opp_overlap 1048062 ATAAACTATACAAAA TTAGTAAA AATT TTTACTAA TGATTAAATATTATA TERM 975 1048400 - 1048436 + F 72 -7.6 -3.82205 | ATCAGTAAATTGTAA GTCTCATAATATTT GAACTATAA AAATATTGTGAGAC TTCTTAATATGTTAG TERM 976 1048567 - 1048593 + F 70 -5.4 -4.62002 | opp_overlap 1048575, overlap 1048584 TTTAATAATTTTTAC TTATTATATATA CAT TATATAAAATAA TTTTGTATGGTTAAT TERM 977 1048788 - 1048774 - f 90 -5.8 -5.59357 | opp_overlap 1048774 ACCATATTAAAAAAA GTTATA TTA TATAAC TAAATTTGATTATTA tsr 1048872 - 1050629 + | methyl-accepting chemotaxis protein TERM 978 1050645 - 1050696 + T 88 -6 -5.3104 | opp_overlap 1050631, overlap 1050646 1050647 TGATATACAAAAGTT TATCCTAGTATTAGATAGAGATGT TTTT ACTTCTTTATCTAAGACTAGGGAC TTTTATTTTTAGTAA TERM 979 1050646 - 1050695 + T 83 -9.5 -3.76997 | opp_overlap 1050631, overlap 1050645 1050647 GATATACAAAAGTTT ATCCTAGTATTAGATAGAGATGT TTTT ACTTCTTTATCTAAGACTAGGGA CTTTTATTTTTAGTA TERM 980 1050647 - 1050694 + T 95 -13 -2.84572 | opp_overlap 1050631, overlap 1050646 1050645 ATATACAAAAGTTTA TCCTAGTATTAGATAGAGATGT TTTT ACTTCTTTATCTAAGACTAGGG ACTTTTATTTTTAGT LI0844 1052017 - 1050746 - | tRNA and rRNA cytosine-C5-methylases TERM 981 1051803 - 1051765 - G 71 -7.6 -3.70848 | overlap 1051767 1051776 ACATATCTAATATAA TATCTCCAACATTAGCTT GTA AAGCTAATACTGGCAACA TAGACGATCGATCTT TERM 982 1051801 - 1051767 - G 72 -8 -3.42884 | overlap 1051765 1051776 ATATCTAATATAATA TCTCCAACATTAGCTT GTA AAGCTAATACTGGCAA CATAGACGATCGATC TERM 983 1052644 - 1052631 - g 74 -6.7 -4.33708 | AAACCATCATCAAAA GCTAC TATT GTAGC TCAAATGAACTCTGG TERM 984 1053197 - 1053222 + G 79 -4.1 -5.24003 | gap 1, overlap 1053199 TATAATGGGAAATCG TCTTAGTCTTCC AAA GGAAG-CTAATA TTTTTAATTTTTCTT TERM 985 1053199 - 1053220 + G 71 -6.7 -4.20007 | gap 1, overlap 1053197 TAATGGGAAATCGTC TTAGTCTTCC AAA GGAAG-CTAA TATTTTTAATTTTTC LI0845 1052160 - 1053803 + | hypothetical protein LI0846 1053988 - 1055109 + | lipopolysaccharide core biosynthesis protein RfaG (glucosyltransferase I) LI0847 1055274 - 1056068 + | hypothetical protein TERM 986 1056123 - 1056094 - T 90 -11.7 -3.21258 | opp_overlap 1056094, overlap 1056098 AGTAATTTAATTGAA GAAAGACATTAAT ATTC ACTAATGTCTTTC TTTTTTACTATCTGA TERM 987 1056094 - 1056123 + T 100 -9.5 -5.24989 | opp_overlap 1056094 1056098 AGTAATTTAATTGAA GAAAGACATTAAT ATTC ACTAATGTCTTTC TTTTTTACTATCTGA TERM 988 1056119 - 1056098 - T 74 -6.7 -4.25681 | opp_overlap 1056094, overlap 1056094 ATTTAATTGAAGAAA GACATTAAT ATTC ACTAATGTC TTTCTTTTTTACTAT gidA 1057477 - 1056140 - | tRNA (uracil-5-)-methyltransferase Gid LI0849 1058297 - 1057662 - | HD superfamily hydrolase TERM 989 1057819 - 1057808 - G 70 -4.4 -4.77157 | opp_overlap 1057808 TTAATCGACTAAAAA GGTT TTCT AACC AGTTTTTAGCATAAG LI0850 1059566 - 1058349 - | hypothetical protein LI0851 1059742 - 1060068 + | NAD(P)H-dependent flavin reductase LI0852 1060120 - 1060419 + | NAD(P)H nitroreductase LI0853 1060829 - 1060422 - | redox protein, regulator of disulfide bond formation TERM 990 1060640 - 1060661 + g 70 -8.1 -3.27653 | opp_overlap 1060644, overlap 1060638 1060644 GCTTAATATTATGTA GTAATGCAT GAAT ATGCATTGC TGTTATAATACAGGT TERM 991 1060957 - 1060973 + r 82 -3.1 -5.85737 | overlap 1060943 TTATAATACATTTTT TATTATA TTG TGTAATA TTTTTTTATTAATAT TERM 992 1061019 - 1061045 + r 100 -15.4 -5.31059 | opp_overlap 1061019 AAAATTTTTAAAAAA GATAGACTGTAT AAA ATACAGTCTATC TTTTTTAATTAATAT TERM 993 1061045 - 1061019 - R 100 -15.4 -5.08011 | opp_overlap 1061019 AAAATTTTTAAAAAA GATAGACTGTAT AAA ATACAGTCTATC TTTTTTAATTAATAT TERM 994 1062039 - 1062001 - R 79 -10 -2.96444 | opp_overlap 1062006, overlap 1062000 1062029 CTTTTTAATAATAAG TTATAGTTAAATTTTTTT ATG AAAAAGATCTAACTATAA TAGATAGATGTAGAG fliI 1063959 - 1062640 - | flagellar biosynthesis/type III secretory pathway ATPase LI0855 1065429 - 1063984 - | flagellar biosynthesis/type III secretory pathway protein fliG 1066471 - 1065476 - | flagellar motor switch protein TERM 995 1066680 - 1066667 - R 73 -3.9 -5.30686 | AATATGGATAAAAAA TAGTA TAGG TACTA AAAATGTTAATTAAG fliF 1068542 - 1066878 - | flagellar biosynthesis/type III secretory pathway lipoprotein TERM 996 1067053 - 1067066 + g 81 -8.1 -4.12554 | overlap 1067041 1067039 1067038 ACAGCCTCCATTGCG GCTGC TTTA GCAGC TTCTTCTTGTGTTTC TERM 997 1068595 - 1068614 + r 74 -8 -3.51407 | opp_overlap 1068593 1068595, overlap 1068593 TAACACTAATTAACA GATATCTA ATTC TAGATATC TAATTTTTCTTTTAT TERM 998 1068614 - 1068595 - R 70 -8 -3.29558 | opp_overlap 1068595 1068593, overlap 1068593 TAACACTAATTAACA GATATCTA ATTC TAGATATC TAATTTTTCTTTTAT fliE 1069002 - 1068655 - | flagellar hook-basal body protein TERM 999 1068788 - 1068809 + g 82 -5.3 -5.38549 | gap 1, opp_overlap 1068788 1068789 1068793, overlap 1068771 1068782 1068789 TGTGTCTCCCCAGAA G-CAAATGAT TGA ATCATTTGAC TTTTTGTTGTTTGCA flgC 1069491 - 1069051 - | flagellar basal body rod protein flgB 1069907 - 1069494 - | flagellar basal body rod protein FlgB cbiO 1070954 - 1070196 - | ABC-type cobalt transport system, ATPase component TERM 1000 1070281 - 1070297 + g 100 -10.9 -4.18693 | TTAGATAGAAGTTCT GCTGATG GTC CATCAGC TTTAATTTCTCCTTT TERM 1001 1070577 - 1070590 + g 79 -5.3 -5.03284 | ATATTGTTTAGCTAT TGCTT CAAT AAGCA TTTCTTTATTTTTTT LI0862 1071709 - 1070963 - | hypothetical protein TERM 1002 1071514 - 1071526 + g 80 -4.9 -5.25656 | opp_overlap 1071514 TATTGATAGGTAAAA GTATT GAT AATAC TTTTTTAATACTTTT cbiM 1072334 - 1071699 - | cobalt transport protein CbiM LI0864 1072818 - 1072321 - | hypothetical protein mviN 1074569 - 1073007 - | uncharacterized membrane protein, putative virulence factor LI0866 1076736 - 1074655 - | membrane metal-binding protein TERM 1003 1076191 - 1076173 - G 81 -9.6 -3.39895 | overlap 1076177 TGTTGCACGAAGTAA TGAAGGTG GTG CACCTCCA ATCCATAGATATAGA murI 1078598 - 1077738 - | glutamate racemase rluB 1079695 - 1078883 - | 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases TERM 1004 1079598 - 1079611 + g 71 -5.3 -4.55697 | CGTGAGCAGACTCCA GCATT AGCT AATGC TTTATTTATACGGAT TERM 1005 1079966 - 1079979 + GH 82 -6.7 -4.78572 | TATCCATATAAGTGG GCTGT TATA ACAGC TTTTATTGCTTCAGG TERM 1006 1080324 - 1080334 + GH 71 -5.4 -4.60041 | CAGCAATTATCCAAG CTGT AAG ACAG TTTTTAACAATAGGT LI0869 1079867 - 1081684 + | ABC-type multidrug transport system, ATPase and permease components TERM 1007 1081687 - 1081676 - g 70 -4.4 -4.65895 | GCGCCTATCGAAAAA GGTT GTTA AACC ACTATGTAAAATATT TERM 1008 1082205 - 1082227 + G 79 -9.2 -3.34344 | ATTCACGTTATATGT GGGGATGCAT ATT ATGTATCTCC TTCCTTAACAACTCA LI0870 1081659 - 1082303 + | hypothetical protein TERM 1009 1082635 - 1082623 - g 80 -2.7 -5.75945 | ATCTTTTAAAAAAAA TACAA ATG TTGCA AAGACCTATTGTGGC htrB 1082307 - 1083191 + | acyltransferase LI0872 1085361 - 1083991 - | hypothetical protein LI0873 1086062 - 1085499 - | ACT domain-containing protein TERM 1010 1086365 - 1086394 + G 93 -12.3 -3.48395 | opp_overlap 1086374, overlap 1086366 1086368 1086374 TAAAGATCTTGGATT GGACCATAAGGAA ATAT TTCCTTATGGTCA TTATATGGGGAAAGT TERM 1011 1086366 - 1086393 + G 100 -15.8 -2.68823 | opp_overlap 1086374, overlap 1086365 1086368 1086374 AAAGATCTTGGATTG GACCATAAGGAA ATAT TTCCTTATGGTC ATTATATGGGGAAAG TERM 1012 1086368 - 1086391 + G 86 -12.6 -2.88822 | opp_overlap 1086374, overlap 1086366 1086365 1086374 AGATCTTGGATTGGA CCATAAGGAA ATAT TTCCTTATGG TCATTATATGGGGAA TERM 1013 1087492 - 1087476 - g 89 -6.5 -5.62219 | opp_overlap 1087477, overlap 1087477 AACACAGTAAAAAAA TCTGGTG TAC CACCAGT AGTATGTATTAATGC TERM 1014 1087491 - 1087477 - g 87 -10 -3.94891 | opp_overlap 1087477, overlap 1087476 ACACAGTAAAAAAAT CTGGTG TAC CACCAG TAGTATGTATTAATG TERM 1015 1087477 - 1087491 + G 75 -10 -2.76689 | opp_overlap 1087476 1087477 ACACAGTAAAAAAAT CTGGTG TAC CACCAG TAGTATGTATTAATG LI0874 1086267 - 1088042 + | formate--tetrahydrofolate ligase TERM 1016 1088484 - 1088496 + G 77 -4.9 -5.07567 | GGTTAGTTATAGGTG GTAAT GCT ATTAC TTTTTTACCATGTAC LI0875 1088081 - 1088974 + | methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase LI0876 1090329 - 1088986 - | tRNA and rRNA cytosine-C5-methylases atoC 1091761 - 1090388 - | response regulator atoS 1093269 - 1091827 - | Signal transduction histidine kinase TERM 1017 1092039 - 1092052 + g 84 -3.9 -5.66684 | TGAAAGTAAGTTCAA TAAAG CCAT CTTTA TTTTTTTCTCCATTA TERM 1018 1092436 - 1092420 - G 74 -9.5 -3.14468 | overlap 1092423 CTGCACTAGAGCGAA TAATCCC AAG GGGATTA CGGATTTCATGTGCA pgi 1094605 - 1093271 - | glucose-6-phosphate isomerase sfsA 1095072 - 1095860 + | DNA-binding protein, stimulates sugar fermentation LI0881 1096972 - 1095872 - | permease LI0882 1098123 - 1096969 - | permease LI0883 1099038 - 1098346 - | Zn-dependent hydrolase TERM 1019 1098912 - 1098928 + g 70 -2.3 -5.30686 | GAACAATATCAGGTT TTTGAAT TTC ATTCCAA TTTTTTGTACATCTT TERM 1020 1099257 - 1099243 - R 74 -2.9 -5.79595 | TGTTAAAAGAAAAAA TATAC TTAAT GTATA ACTTGTAAAACTACA selB 1101281 - 1099356 - | selenocysteine-specific translation elongation factor TERM 1021 1100382 - 1100368 - G 76 -2.8 -5.52384 | opp_overlap 1100368, overlap 1100370 TTTTTATTAAAAAAA TATAGC TGT GCTAGA ATTTCCTGTGTTCCA TERM 1022 1100977 - 1100996 + g 70 -3.6 -4.99645 | opp_overlap 1100977 TTTATCCCTAACAAT GAACAAAT TTCT ATATGTTC TTTTGTTTGTGGCAT TERM 1023 1101323 - 1101333 + r 70 -4 -5.15167 | opp_overlap 1101323 1101330 AGAATTAACACATAA TTAC AAT GTAA TTTTTATTACTAATC LI0885 1102847 - 1101390 - | Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases TERM 1024 1102376 - 1102360 - G 74 -6.5 -4.27686 | GAAAAGCATTGAAAA GCTGCTA CGC TAGCTGC AGAGCCTCCACTTGA TERM 1025 1102633 - 1102643 + g 90 -8.2 -5.0538 | ACCGCAATAGGTATA CCCC AAA GGGG TTTTTTAGGATCAGG LI0886 1103156 - 1102873 - | glutamyl-tRNA (Gln) amidotransferase subunit C TERM 1026 1103326 - 1103301 - R 100 -9.8 -4.75472 | opp_overlap 1103301, overlap 1103275 TGGACATCAATAAAA TTGCCTGGAA CTGATT TCCCAGGCAA TTCAATATGTGTAGG LI0887 1103869 - 1103384 - | hypothetical protein TERM 1027 1103487 - 1103507 + g 75 -4.8 -4.85177 | TTAGGAGGTTGTATG TTTGCAAG ATTTC CTTGTAAA TTTTTAGTATGATTT TERM 1028 1103716 - 1103738 + g 93 -10.6 -4.03696 | CAACATTGCTACTTT TCCCACTAAG GAC CTTAGAGGGA TTTATAGTACTTGTT LI0888 1104132 - 1104584 + | universal stress protein UspA-like nucleotide-binding protein LI0889 1105771 - 1105139 - | hypothetical protein TERM 1029 1106084 - 1106121 + r 100 -23.1 -4.85599 | opp_overlap 1106088 TGTATTATGTATTTA GTAAGAGAGGTGTATTC CTAG GAATACACCTCTCTTAC TTTTTATAGAATGAG TERM 1030 1106117 - 1106088 - R 100 -18.1 -3.18912 | opp_overlap 1106084 TTATGTATTTAGTAA GAGAGGTGTATTC CTAG GAATACACCTCTC TTACTTTTTATAGAA TERM 1031 1106167 - 1106195 + r 100 -4.7 -6.47325 | opp_overlap 1106168, overlap 1106168 ATAGTAATAGTTGAA ATGAAAGGAAATA TGT TGTTTCTTTTCAA TTTTTTTTCTTTTTT TERM 1032 1106168 - 1106194 + r 83 -8.2 -4.40159 | opp_overlap 1106168, overlap 1106167 TAGTAATAGTTGAAA TGAAAGGAAATA TGT TGTTTCTTTTCA ATTTTTTTTCTTTTT LI0890 1110171 - 1106149 - | hypothetical protein TERM 1033 1108526 - 1108543 + g 71 -3.5 -5.18158 | AGTGAAGAAGACTTG TCTAATG TAGC TATTAGA TTCTTTTTTTTTGTT TERM 1034 1110294 - 1110253 - H 72 -9.1 -2.64695 | opp_overlap 1110252 1110255 1110265 1110291, overlap 1110265 1110291 CTTAATAGAGAATAT TTTATTATAAAACTTCATT TTAG AATGAAGTTTTATAATATT TAACTATATAATAAA TERM 1035 1110255 - 1110292 + H 100 -16.1 -3.74792 | opp_overlap 1110253 1110265 1110291, overlap 1110252 1110265 1110291 TAATAGAGAATATTT TATTATAAAACTTCATT TTAG AATGAAGTTTTATAATA TTTAACTATATAATA TERM 1036 1110282 - 1110265 - H 76 -7.1 -4.46926 | opp_overlap 1110255 1110265, overlap 1110253 TATTTTATTATAAAA CTTCATT TTAG AATGAAG TTTTATAATATTTAA TERM 1037 1110265 - 1110282 + H 78 -7.1 -4.58303 | opp_overlap 1110265 1110253, overlap 1110255 TATTTTATTATAAAA CTTCATT TTAG AATGAAG TTTTATAATATTTAA LI0891 1111143 - 1111616 + | hypothetical protein TERM 1038 1112295 - 1112309 + G 77 -10 -3.05498 | opp_overlap 1112292 1112293 GTGTAGTATTAAGTG GCCCTT AAT AAGGGC TCTATCTGTAGCCTG lnt 1111705 - 1113402 + | apolipoprotein N-acyltransferase LI0893 1113451 - 1114539 + | protein chain release factor B TERM 1039 1115199 - 1115185 - g 85 -8.6 -4.16943 | TCGTACAGGCGAAAA GGTTGT TGT ACAACC AAAACGTCTTCCATT himD 1114982 - 1115257 + | nucleoid DNA-binding protein TERM 1040 1115404 - 1115436 + F 100 -7.3 -5.57396 | gap 1, opp_overlap 1115400 1115404 TCTATACTTAATTAA GACTACTTAAAAGA GAACTA TCTTTTA-GTAGTC TTTTTTATTAGTTAT dapF 1115585 - 1116430 + | diaminopimelate epimerase dapA 1116477 - 1117382 + | dihydrodipicolinate synthase TERM 1041 1118078 - 1118099 + G 78 -2.3 -5.76633 | gap 1, overlap 1118081 AGGTTTTTTGATTGT TGTTGGCTGG GGA CTAGTCA-CA TTTTTTTATGTATGG TERM 1042 1118241 - 1118261 + G 71 -7.7 -3.63073 | GGAGCTGTTTTTTGT TGGTATAGT TAT ATTATACCA TTATTAACAAATGTA araJ 1117584 - 1118747 + | protein AraJ TERM 1043 1119093 - 1119105 + G 91 -4.9 -5.79595 | opp_overlap 1119093 TGAAGTTTTAAAAAC TATTC CTG GAATA TTTTTTCTTTTAGGC tatD 1118929 - 1119711 + | Mg-dependent DNase LI0899 1120381 - 1119740 - | hypothetical protein LI0900 1120638 - 1121039 + | metal-dependent hydrolase TERM 1044 1121295 - 1121282 - g 74 -2.3 -5.4387 | ATACAAAGGAAAAAA CTTCG AAGT CGATG AAGATGGTTTTTTAT dsr 1121253 - 1121570 + | sulfite reductase, dissimilatory-type gamma subunit TERM 1045 1121659 - 1121669 + F 78 -2.6 -5.86609 | opp_overlap 1121659, overlap 1121655 TAATAATTTTACTAA TAAT TAG ATTA TTTTTATTTTTTTCA LI0902 1121916 - 1122938 + | outer membrane protein TERM 1046 1122984 - 1122967 - f 95 -11.3 -4.13206 | opp_overlap 1122967 1122982 1122982 ATTACTAAATAAGAA GGGCTTG GATT CAAGCCC TTTTTTTGTGAAGGG TERM 1047 1122967 - 1122984 + F 100 -11.3 -5.60993 | opp_overlap 1122967, overlap 1122982 1122982 ATTACTAAATAAGAA GGGCTTG GATT CAAGCCC TTTTTTTGTGAAGGG TERM 1048 1123009 - 1123024 + G 75 -4.8 -4.95876 | GAAGGGGTTTTATAT GAAAAA ATTT TTTTTC TTTTTAGTTATGCTT LI0903 1122971 - 1123441 + | hypothetical protein TERM 1049 1123533 - 1123477 - T 100 -34.5 -3.02626 | opp_overlap 1123477 1123482 1123488 1123494, overlap 1123468 1123482 1123488 1123494 GAATATTTAGATATA TCTAATATAAAGCAAAAGAAGGTATGC AAG GCATACCTTCTTTTGCTTTATATTAGA TATATCTAAAACTAA TERM 1050 1123477 - 1123533 + T 100 -34.5 -2.99471 | opp_overlap 1123468 1123477 1123482 1123488 1123494, overlap 1123482 1123488 1123494 GAATATTTAGATATA TCTAATATAAAGCAAAAGAAGGTATGC AAG GCATACCTTCTTTTGCTTTATATTAGA TATATCTAAAACTAA TERM 1051 1123528 - 1123482 - T 100 -28.6 -3.17797 | opp_overlap 1123477 1123482 1123488 1123494, overlap 1123477 1123488 1123494 TTTAGATATATCTAA TATAAAGCAAAAGAAGGTATGC AAG GCATACCTTCTTTTGCTTTATA TTAGATATATCTAAA TERM 1052 1123482 - 1123528 + T 100 -28.6 -3.17797 | opp_overlap 1123482 1123477 1123488 1123494, overlap 1123477 1123488 1123494 TTTAGATATATCTAA TATAAAGCAAAAGAAGGTATGC AAG GCATACCTTCTTTTGCTTTATA TTAGATATATCTAAA TERM 1053 1123488 - 1123522 + T 100 -23.2 -4.22678 | opp_overlap 1123482 1123477 1123488 1123494, overlap 1123482 1123477 1123494 TATATCTAATATAAA GCAAAAGAAGGTATGC AAG GCATACCTTCTTTTGC TTTATATTAGATATA TERM 1054 1123522 - 1123488 - T 100 -23.2 -4.22678 | opp_overlap 1123488 1123482 1123477 1123494, overlap 1123482 1123477 1123494 TATATCTAATATAAA GCAAAAGAAGGTATGC AAG GCATACCTTCTTTTGC TTTATATTAGATATA TERM 1055 1123516 - 1123494 - T 100 -15 -4.67563 | opp_overlap 1123494 1123488 1123482 1123477, overlap 1123488 1123482 1123477 TAATATAAAGCAAAA GAAGGTATGC AAG GCATACCTTC TTTTGCTTTATATTA TERM 1056 1123494 - 1123516 + T 100 -15 -4.67563 | opp_overlap 1123488 1123482 1123477 1123494, overlap 1123488 1123482 1123477 TAATATAAAGCAAAA GAAGGTATGC AAG GCATACCTTC TTTTGCTTTATATTA rpoB 1127711 - 1123545 - | DNA-directed RNA polymerase, beta subunit/140 kD subunit TERM 1057 1123931 - 1123919 - G 71 -7.7 -3.61398 | CTTGTTCTCCAACAA GGAAC GTT GTTCC TCCAGGATTTGTTAC TERM 1058 1124081 - 1124105 + g 71 -7.9 -3.66288 | opp_overlap 1124086 CACCTCTTGTTTTAA GGATATCATGA AGT TCAGGATGTCC TTCTGTTAAGAGATC TERM 1059 1125978 - 1125968 - G 70 -8.2 -3.18274 | CGTATTCGAATTTAA GCCC TTT GGGC AGACCTTCCCAAACA TERM 1060 1126848 - 1126860 + g 71 -6.3 -4.2338 | opp_overlap 1126848 1126847, overlap 1126844 ACCAAGCTCCATAAG TCGTT TTA AACGA TTATTTCTATTAATA rpoB 1131908 - 1127787 - | DNA-directed RNA polymerase subunit beta TERM 1061 1129333 - 1129348 + g 73 -9 -3.17876 | TTTGAAAGCATTTCC TCCCCA ACAT TGGGGA TATCTCTTGTGATTT TERM 1062 1130878 - 1130893 + g 71 -7.6 -3.61902 | opp_overlap 1130877 TCACGGATAGATGAC GAGGTA TCAT TACCTC TTGTGTGTAATACAG TERM 1063 1132028 - 1132001 - R 72 -6.4 -4.35361 | opp_overlap 1132001 1132004, overlap 1131996 1132026 TACAACAAAACTAAA TAACTTATCCAA AATT TTGGAAAAGCTA TTATAAACAATAGTG hemL 1133538 - 1132246 - | glutamate-1-semialdehyde aminotransferase TERM 1064 1133258 - 1133301 + g 85 -4.6 -5.63504 | gap 1, overlap 1133259 TTAGCTAATAGTACT TCAGCTTTACATGGTGC-ACC AAA GGTTGTTCCATTTGAAGCTGC TTTTTTTATAGCATT TERM 1065 1133259 - 1133300 + g 79 -8.1 -3.96475 | gap 1, overlap 1133258 TAGCTAATAGTACTT CAGCTTTACATGGTGC-ACC AAA GGTTGTTCCATTTGAAGCTG CTTTTTTTATAGCAT nirH 1134038 - 1133538 - | transcriptional regulators TERM 1066 1134784 - 1134768 - g 70 -7.3 -3.81022 | AAAGTGGTATAACAA CCCTTCT CCC AAAAGGG ATAGATCATCTTTCG TERM 1067 1135275 - 1135301 + G 71 -6.6 -4.21676 | overlap 1135268 1135278 GGGGGAAGCCTGCTA TAGTTGCTGGTT TTG AACCAGCGGATA TTTTAGATGCGTTAT hypD 1134626 - 1135717 + | hydrogenase maturation factor lgt 1137279 - 1136500 - | prolipoprotein diacylglyceryltransferase cmk 1138158 - 1137481 - | cytidylate kinase LI0911 1139284 - 1138388 - | hypothetical protein dnaK 1139678 - 1141579 + | molecular chaperone dnaK TERM 1068 1141609 - 1141638 + T 100 -15.9 -5.4251 | opp_overlap 1141612 1141617, overlap 1141636 CTACCCCCACTTATC CAACAAAAGGGCT GCAA GGCCCTTTTGTTG TTTTTTATCTATCAA TERM 1069 1141635 - 1141612 - T 85 -11.1 -3.07816 | opp_overlap 1141609, overlap 1141617 CCCCCACTTATCCAA CAAAAGGGC TGCAAG GCCCTTTTG TTGTTTTTTATCTAT TERM 1070 1141630 - 1141617 - T 70 -5.2 -4.68384 | opp_overlap 1141609, overlap 1141612 ACTTATCCAACAAAA GGGC TGCAAG GCCC TTTTGTTGTTTTTTA aspA 1143127 - 1141712 - | aspartate ammonia-lyase dacC 1144207 - 1143320 - | D-alanyl-D-alanine carboxypeptidase livE 1144573 - 1145496 + | branched-chain amino acid aminotransferase dnaX 1145527 - 1147251 + | DNA polymerase III, gamma/tau subunits LI0917 1147270 - 1147581 + | hypothetical protein recR 1147646 - 1148257 + | recombinational DNA repair protein LI0919 1149008 - 1148418 - | helicase family protein TERM 1071 1149099 - 1149117 + r 77 -9 -3.40163 | opp_overlap 1149094 TAGTAAACATTACCC TAGAGTTA GTT TAACTCTA TTAGTATTAATAATA LI0920 1150072 - 1149173 - | membrane proteins related to metalloendopeptidases TERM 1072 1149561 - 1149574 + g 74 -6.7 -4.32177 | overlap 1149557 CAAATAGATGGGATA GAAGC TAAA GCTTC TTTCTTGTCACGTAA TERM 1073 1149999 - 1150013 + g 83 -7.2 -4.77036 | opp_overlap 1149998 GAACTACCAAGCCAG CCTTTA ATA TAAAGG TTTTTACTAGTACCG TERM 1074 1150380 - 1150392 + H 76 -3.5 -5.59564 | ACGTAATTTAGTTAG TAAAA ATT TTTTA TTTTTTTAAATTTAT TERM 1075 1150678 - 1150660 - H 74 -6.8 -4.35885 | opp_overlap 1150663 ATTTACTATAATAAA TAAGCTAC AAT ATAGCTTA TGAAGAATTATACTA TERM 1076 1150764 - 1150780 + H 100 -6.7 -5.93252 | ATGCTGTTTATTTTT TATGAAT CTT ATTCATA TTTTTTATTTTTCAG purD 1150886 - 1152172 + | phosphoribosylamine--glycine ligase purK 1152159 - 1152674 + | phosphoribosylcarboxyaminoimidazole (NCAIR) mutase TERM 1077 1152929 - 1152944 + G 74 -6.2 -4.51699 | AAATAAGTTTCTTTA TGGATT AAAA AATCCA TTTTCTGATAGTTAT lepB 1152735 - 1153367 + | Signal peptidase I qacE 1153701 - 1153381 - | membrane transporters of cations and cationic drugs qacE 1154109 - 1153732 - | membrane transporters of cations and cationic drugs mdoB 1156142 - 1154151 - | hypothetical protein TERM 1078 1154760 - 1154787 + g 79 -9.3 -3.37354 | TGCTAATAATTCTGG TGTAGGGTTTA ATTTTA TAAACCCTGCA TTATCGCTAGGTATG TERM 1079 1155622 - 1155636 + g 73 -7.2 -4.03474 | opp_overlap 1155621 CCTCGGGGAAAGGAT GATAAC ATT GTTATC TTATTACTTTTTAGT TERM 1080 1156074 - 1156047 - G 73 -4.2 -4.94168 | ATATAATAAAATAAA CATACTTATTCT TGCA AGTATGAGTATG CCCCATATTAAAAAT mviN 1157719 - 1156205 - | uncharacterized membrane protein, putative virulence factor TERM 1081 1156540 - 1156528 - G 72 -4.8 -4.80736 | overlap 1156536 TATTAAAGAAATAAA GGAG TAATG CTCC CAATAGAAAGCTTAG tgt 1157845 - 1158960 + | queuine/archaeosine tRNA-ribosyltransferase LI0929 1160209 - 1159064 - | cell wall biosynthesis glycosyltransferase TERM 1082 1159229 - 1159254 + g 70 -4.1 -4.70887 | GGATGTTACTAATGG GAGAAGGAGTT GTAT AACTTTTTTTC TTTCTTTATTAATAC TERM 1083 1160270 - 1160294 + r 87 -11.6 -2.81936 | opp_overlap 1160270, overlap 1160267 GGTTAAAAGAAAAAA GCGCAATTAA ATATA TTAATTGCGC TAAATTTTATAATAT TERM 1084 1160294 - 1160270 - R 100 -11.6 -5.79595 | opp_overlap 1160270 1160267 GGTTAAAAGAAAAAA GCGCAATTAA ATATA TTAATTGCGC TAAATTTTATAATAT TERM 1085 1160343 - 1160358 + r 70 -4 -5.2166 | opp_overlap 1160336 CTTCAACAGTAGCCC CAGCTT CAGT AAGTTG TTTTTTGGCTTCTTC rplL 1160706 - 1160320 - | 50S ribosomal protein L7/L12 TERM 1086 1160405 - 1160424 + g 76 -6.4 -4.50859 | opp_overlap 1160393 1160391 ACACCTTCTTTTAGG GTAGAAGG TGCT CCGTCTAC TTTATCTTTTGCTTC rplJ 1161272 - 1160754 - | 50S ribosomal protein L10 TERM 1087 1161226 - 1161254 + g 77 -6.1 -4.6644 | overlap 1161206 1161227 1161228 1161234 GATGCAGTATCAGCT TTTGCTTTGATTT GAG AAATCAGAGCAGC TTTTTCAGATCTATT TERM 1088 1161227 - 1161253 + g 81 -9.6 -3.3878 | overlap 1161206 1161226 1161228 1161234 ATGCAGTATCAGCTT TTGCTTTGATTT GAG AAATCAGAGCAG CTTTTTCAGATCTAT TERM 1089 1161228 - 1161252 + g 81 -10.9 -2.62545 | overlap 1161206 1161227 1161226 1161234 TGCAGTATCAGCTTT TGCTTTGATTT GAG AAATCAGAGCA GCTTTTTCAGATCTA TERM 1090 1161396 - 1161415 + r 78 -9.4 -3.28472 | opp_overlap 1161396, overlap 1161394 1161393 CCAGTCCTTAGCCAA CCATCTTA GTTG TAAGATGG TACTTTTTCATGAAA TERM 1091 1161415 - 1161396 - R 77 -9.4 -3.05816 | opp_overlap 1161394 1161393 1161396 CCAGTCCTTAGCCAA CCATCTTA GTTG TAAGATGG TACTTTTTCATGAAA TERM 1092 1161421 - 1161447 + r 95 -6.7 -5.41746 | TGTAAGATGGTACTT TTTCATGAAAG GTTAA CTTTCAAGAAA TTTTTTTACAAGATT rplA 1162140 - 1161433 - | 50S ribosomal protein L1 rplK 1162667 - 1162245 - | 50S ribosomal protein L11 TERM 1093 1162702 - 1162730 + r 75 -9 -3.2091 | opp_overlap 1162707, overlap 1162669 1162700 1162707 TTGACTAGAGTGTTA TAGAACCTATGC TAATT GCATAAGTTCTA TCTATATATTTTATC nusG 1163331 - 1162747 - | transcription antiterminator TERM 1094 1163429 - 1163443 + r 70 -3.6 -5.14985 | AAACAAAAACCAATA CAATAA GGC TTGTTG TTTTTGTCTCTTTAA tufA 1165056 - 1163863 - | elongation factor Tu TERM 1095 1165476 - 1165492 + r 75 -9.5 -2.63631 | TTGAACCCGCAACCT GCTGATT ACA AATCAGC TGCTCTGCCAATTGA pqqL 1168367 - 1165638 - | Zn-dependent peptidase TERM 1096 1166320 - 1166330 + g 72 -2.6 -5.27399 | GGTTGAGCTATTTGT TTTT CCC AAAA TTTTTTAATGTCTTG TERM 1097 1168051 - 1168064 + g 80 -6.7 -4.82667 | AATATATGACTGATC CCAGA TTGT TCTGG TTTTTCATATGCTGA TERM 1098 1168483 - 1168469 - H 80 -5 -5.33921 | overlap 1168471 AAAGTAATTAAAAAA CAGTAC GTT GTACTA AAACATAATTGTTGA TERM 1099 1168954 - 1168924 - g 72 -2.7 -5.28755 | overlap 1168926 AAATATATCAAAAAA CATTCT-GATCCAGC AAA GATGGATCCAGAA-G AGCTTTTTGAAGAAA TERM 1100 1168953 - 1168926 - g 71 -6.4 -4.24891 | gap 1, overlap 1168924 ATATATCAAAAAACA TTCT-GATCCAGC AAA GATGGATCCAGAA GAGCTTTTTGAAGAA thiC 1168519 - 1169796 + | thiamine biosynthesis protein ThiC TERM 1101 1169879 - 1169908 + T 100 -7.3 -5.46276 | gap 1 TATAAATAAATTCTT TCTGCCAG-ACTAT GCT ATATTTCTGGCAGA TTTTTTATGTATATT purF 1171351 - 1169954 - | glutamine phosphoribosylpyrophosphate amidotransferase carB 1174657 - 1171427 - | carbamoylphosphate synthase large subunit (split gene in MJ) TERM 1102 1173079 - 1173094 + g 72 -6.2 -4.30978 | CAAGATAGTATGTTG GAACTA TATC TAGTTC TTTTCGTAAGTTACG TERM 1103 1173699 - 1173718 + g 82 -8.6 -4.07568 | opp_overlap 1173711 1173712 TTTGCTGCAATTTTG GCAATAGG AAAA CCTGTTGC TTTTGAAGCAAGAGC yqiE 1174801 - 1175283 + | ADP-ribose pyrophosphatase corC 1175531 - 1176382 + | Mg2+/Co2+ transporter TERM 1104 1176509 - 1176519 + F 71 -2.6 -5.56372 | CTCTTTCTCTGTTAG TTAT TTC ATAA TTTTTATTTTAATTT TERM 1105 1176648 - 1176613 - g 82 -3.2 -5.61824 | opp_overlap 1176633 TAAAACGTAAAAAAA CACCTGCACTTCAAGG GTGT CCTCAACGCAGAGGTG TTTGTACTCGTGTAT rpsL 1176552 - 1176923 + | 30S ribosomal protein S12 TERM 1106 1177121 - 1177134 + G 74 -6.7 -4.42653 | opp_overlap 1177120 CCTATTTATAATAGT CGACT TGCT AGTCG TTTTGTAAATCGCCT rpsG 1177061 - 1177531 + | 30S ribosomal protein S7 TERM 1107 1177694 - 1177665 - g 78 -7.2 -4.40804 | opp_overlap 1177665 GAGTATCGCACAAAA TTGGAGAGACAC ATGATG GTGCCTCTACAA TGGATTGGATGGAGC fusA 1177547 - 1179622 + | elongation factor G LI0945 1180744 - 1179650 - | dienelactone hydrolase TERM 1108 1179886 - 1179898 + g 72 -4.9 -4.81852 | AGTGATATTTAGGAG GATTA ATA TAATC TTTTGTTGCTTCTAC TERM 1109 1181280 - 1181299 + H 100 -8.6 -5.56263 | GATTTTTTTTAGTTA GGAAGGCT GATA AGTCTTCC TTTTTATTTTATGAT TERM 1110 1181396 - 1181409 + H 100 -5.3 -5.86965 | ATATAGCTATGGCTA CTGTT AATT AACAG TTTTTTTTAGTAAAT TERM 1111 1181473 - 1181500 + H 88 -5.2 -5.4659 | gap 1, opp_overlap 1181480 TTGTAGATAACAAGT TATATAA-GAATA CAT TATTCATTATATA TTTTTATTTATATTA TERM 1112 1181839 - 1181865 + H 74 -8.2 -3.57144 | opp_overlap 1181834 1181839 1181841 TTACCTATAATGATA CATAGAACAAAT AAG ATTTTTTCTATG TTTAAAGATGAGAAG gidA 1181886 - 1183754 + | tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA LI0947 1184004 - 1184525 + | cell wall-associated hydrolases (invasion-associated proteins) LI0948 1185660 - 1184566 - | glycosyltransferase TERM 1113 1185042 - 1185054 + g 85 -4.1 -5.69473 | overlap 1185030 GTACTTCCCATGGGG GCAGA TCT TTTGC TTTTTTTATAATATG TERM 1114 1185816 - 1185791 - R 100 -16.3 -5.64304 | opp_overlap 1185785 1185793 TAATACAAGAAAAAA CACTGATCCAG CTAA CTGGATCAGTG TTAAGGTATTATTTG TERM 1115 1185793 - 1185814 + r 100 -13.1 -3.10876 | opp_overlap 1185791, overlap 1185785 ATACAAGAAAAAACA CTGATCCAG CTAA CTGGATCAG TGTTAAGGTATTATT LI0949 1186151 - 1185825 - | hypothetical protein LI0950 1187114 - 1186164 - | branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase asd 1188358 - 1187315 - | aspartate-semialdehyde dehydrogenase LI0952 1189645 - 1189061 - | hypothetical protein ccmC 1190455 - 1189772 - | ABC-type transport system involved in cytochrome c biogenesis, permease component LI0954 1191180 - 1190503 - | ABC-type transport system involved in cytochrome c biogenesis, permease component ccmA/ccmB 1191860 - 1191225 - | ABC-type multidrug transport system, ATPase component TERM 1116 1191539 - 1191557 + gr 72 -2.5 -5.24129 | gap 1, overlap 1191542 TAAGTTTCATTTGTT C-AATAGC AGTT GCTATTTG TTTTTTATCAAGACG TERM 1117 1191542 - 1191553 + gr 76 -4.4 -5.13354 | overlap 1191539 GTTTCATTTGTTCAA TAGC AGTT GCTA TTTGTTTTTTATCAA ccmF 1193829 - 1191823 - | cytochrome c biogenesis factor TERM 1118 1193702 - 1193712 + gr 79 -4 -5.58074 | GTAATTTCTGCAAGT GTAA GGC TTAC TTTTTTTGATGATTG b2503 1194384 - 1193968 - | hypothetical protein TERM 1119 1194226 - 1194216 - G 77 -5.4 -4.93316 | opp_overlap 1194216 TAACAATACCAAAAA GTCT TGC AGAC TTAAGTTTTTCACTA yhdP 1195519 - 1194473 - | hemolysin-like protein TERM 1120 1195732 - 1195748 + H 70 -5.3 -4.72272 | TTTACTATACAATTT TTTTTTA AGT TAAAAAA TTTTTAATAAAAAAA TERM 1121 1195761 - 1195749 - H 70 -3.5 -5.15969 | TTTTAAGTTAAAAAA TTTTT AAT AAAAA AATATAACATTGAGT TERM 1122 1196479 - 1196501 + G 78 -7.8 -4.09685 | opp_overlap 1196481, overlap 1196481 GCAATTTGAGATGAG AATCCATAAG CGT CTTATGGATA TTTTAGAACCTACAC TERM 1123 1196481 - 1196499 + G 86 -10.4 -3.64716 | opp_overlap 1196481, overlap 1196479 AATTTGAGATGAGAA TCCATAAG CGT CTTATGGA TATTTTAGAACCTAC TERM 1124 1196499 - 1196481 - g 85 -10.4 -3.47345 | opp_overlap 1196481 1196479 AATTTGAGATGAGAA TCCATAAG CGT CTTATGGA TATTTTAGAACCTAC rpsJ 1196267 - 1196584 + | 30S ribosomal protein S10 rplC 1196606 - 1197238 + | 50S ribosomal protein L3 rplD 1197254 - 1197874 + | 50S ribosomal protein L4 rplW 1197889 - 1198176 + | 50S ribosomal protein L23 rplB 1198179 - 1199009 + | 50S ribosomal protein L2 rpsS 1199018 - 1199299 + | 30S ribosomal protein S19 rplV 1199312 - 1199650 + | 50S ribosomal protein L22 rpsC 1199654 - 1200295 + | 30S ribosomal protein S3 rplP 1200295 - 1200708 + | 50S ribosomal protein L16 rpsQ 1200896 - 1201162 + | 30S ribosomal protein S17 rplN 1201178 - 1201546 + | 50S ribosomal protein L14 rplX 1201555 - 1201875 + | 50S ribosomal protein L24 rplE 1201885 - 1202424 + | 50S ribosomal protein L5 rpsH 1202656 - 1203036 + | 30S ribosomal protein S8 rplF 1203044 - 1203589 + | 50S ribosomal protein L6 rplR 1203602 - 1203964 + | 50S ribosomal protein L18 rpsE 1203989 - 1204480 + | 30S ribosomal protein S5 rplO 1204661 - 1205110 + | 50S ribosomal protein L15 secY 1205122 - 1206429 + | preprotein translocase subunit SecY TERM 1125 1206547 - 1206535 - g 76 -4.1 -5.03945 | GAAGAATTAGAAAAA CAAGT TAG ACCTG GATTATCTACTCTTT TERM 1126 1206711 - 1206701 - g 95 -4 -6.26417 | opp_overlap 1206702 CATCAGAAAAAAAAA TTCT TCA AGAA GGAGATATAGTTAGC map 1206433 - 1207203 + | methionine aminopeptidase rpsM 1207425 - 1207793 + | 30S ribosomal protein S13 rpsK 1207850 - 1208239 + | 30S ribosomal protein S11 rpsD 1208262 - 1208888 + | 30S ribosomal protein S4 rpoA 1208901 - 1209944 + | DNA-directed RNA polymerase subunit alpha rplQ 1209934 - 1210314 + | ribosomal protein L17 TERM 1127 1210385 - 1210334 - f 100 -14.9 -3.41988 | opp_overlap 1210336 1210339 1210347, overlap 1210336 1210339 1210342 1210347 TTTCATTGAATAATA CATAATAATAAAAGGTCACCTTT TCATTT ATAGGTGACCTTTTATTATTATT ATTATTATTATGTAT TERM 1128 1210383 - 1210336 - f 100 -17.5 -3.27902 | opp_overlap 1210336 1210339 1210347, overlap 1210334 1210339 1210342 1210347 TCATTGAATAATACA TAATAATAAAAGGTCACCTTT TCATTT ATAGGTGACCTTTTATTATTA TTATTATTATTATGT TERM 1129 1210336 - 1210383 + F 100 -17.5 -4.14147 | opp_overlap 1210336 1210334 1210339 1210342 1210347, overlap 1210339 1210347 TCATTGAATAATACA TAATAATAAAAGGTCACCTTT TCATTT ATAGGTGACCTTTTATTATTA TTATTATTATTATGT TERM 1130 1210339 - 1210380 + F 100 -14.8 -4.15654 | opp_overlap 1210336 1210334 1210339 1210342 1210347, overlap 1210336 1210347 TTGAATAATACATAA TAATAAAAGGTCACCTTT TCATTT ATAGGTGACCTTTTATTA TTATTATTATTATTA TERM 1131 1210380 - 1210339 - f 100 -14.8 -3.76835 | opp_overlap 1210339 1210336 1210347, overlap 1210336 1210334 1210342 1210347 TTGAATAATACATAA TAATAAAAGGTCACCTTT TCATTT ATAGGTGACCTTTTATTA TTATTATTATTATTA TERM 1132 1210377 - 1210342 - f 100 -12.1 -3.99553 | opp_overlap 1210339 1210336 1210347, overlap 1210339 1210336 1210334 1210347 AATAATACATAATAA TAAAAGGTCACCTTT TCATTT ATAGGTGACCTTTTA TTATTATTATTATTA TERM 1133 1210372 - 1210347 - f 90 -7.6 -4.97957 | opp_overlap 1210347 1210339 1210336, overlap 1210342 1210339 1210336 1210334 TACATAATAATAAAA GGTCACCTTT TCATTT ATAGGTGACC TTTTATTATTATTAT TERM 1134 1210347 - 1210372 + F 90 -7.6 -5.01823 | opp_overlap 1210342 1210339 1210336 1210334 1210347, overlap 1210339 1210336 TACATAATAATAAAA GGTCACCTTT TCATTT ATAGGTGACC TTTTATTATTATTAT TERM 1135 1210881 - 1210869 - g 70 -4.1 -4.78149 | GCCAGAAGGGAAAAA TACAG CCC CTGCA ATTGCCCTTGGAGTA xanB 1210609 - 1212024 + | phosphomannose isomerase/GDP-mannose pyrophosphorylase TERM 1136 1213320 - 1213304 - g 100 -9.5 -5.3104 | opp_overlap 1213303 TTATCAAAAAGAAAA TCTCCAA AGG TTGGAGA ATGGTGTATAGGTTT vc0389 1212317 - 1213618 + | putative Na+/H+ antiporter TERM 1137 1213883 - 1213903 + F 82 -10.5 -2.65442 | TGTTTCCCTTCACTT TTACCACAG ATA CTGTGGTGA TACTATGAATAATAT TERM 1138 1214220 - 1214199 - g 83 -2.3 -5.80951 | overlap 1214203 ATTGAAAATAAAAAA TATACACAA GAAG CTGTGTCTA AATTTTTAAGTATAG hisS 1213908 - 1215167 + | histidyl-tRNA synthetase TERM 1139 1216806 - 1216819 + G 70 -8.1 -3.21465 | overlap 1216800 1216807 CTTGAGTATGGCGCG CCACC ACAT GGTGG TATTGCCTTTGGATT aspS 1215195 - 1216994 + | aspartyl-tRNA synthetase TERM 1140 1217480 - 1217434 - g 87 -11.4 -3.2794 | opp_overlap 1217448, overlap 1217448 GCTTACCTATAGGAA TTTCTATTGCAGA-ACCTTTAA CAGTT TTAAAGGTATCTGCAA-AGAAA AAGTTAGAAAGTATA dppF 1217085 - 1218077 + | oligopeptide ABC transporter ATP-binding protein LI0989 1218216 - 1218980 + | 3-deoxy-manno-octulosonate cytidylyltransferase TERM 1141 1219556 - 1219543 - g 70 -3.9 -4.86731 | opp_overlap 1219543 TCTTTGGAAACAAAA TAAGA TACC TCTTA TTGTTTATGATTATG TERM 1142 1219623 - 1219639 + G 90 -8.1 -4.86731 | opp_overlap 1219626 CAGGTTTTGATCCAT TAATGGT ACC ACCATTA TTTTCTTTAGAGCAA carA 1218980 - 1220110 + | carbamoyl phosphate synthase small subunit LI0991 1220290 - 1221117 + | GluNAc transferase LI0992 1221821 - 1221162 - | hypothetical protein acrA 1222274 - 1223455 + | multidrug efflux membrane permease TERM 1143 1224097 - 1224080 - g 72 -4.9 -4.74706 | opp_overlap 1224080 TGGAACAGTTAAAAA TTACACC AAAT GATGTAA TTAATGCTATTAATG acrB 1223455 - 1226604 + | acriflavin resistance protein D TERM 1144 1227304 - 1227314 + G 74 -6.8 -4.37721 | opp_overlap 1227303 1227298 1227304, overlap 1227296 ATTGCACAAGAGAAT GCTG AAA CAGC TTTATCTGTTTTGTT oprM 1226608 - 1227987 + | outer membrane efflux protein TERM 1145 1228295 - 1228321 + F 83 -7.9 -4.44608 | TAATGATCATTGGAC CAGCGGTTTCG TTTAT CGTCACCGCTG TTGTTTTTAAGTCCA LI0996 1228358 - 1228783 + | hypothetical protein TERM 1146 1230009 - 1230025 + G 79 -8.1 -3.96216 | GAAGTTATTATGGAT GATACAA ATA TTGTATC TTGTTTAGGTCAAGA purB 1228824 - 1230155 + | adenylosuccinate lyase pyrE 1230186 - 1230749 + | orotate phosphoribosyltransferase LI0999 1231102 - 1232007 + | hypothetical protein LI1000 1232004 - 1232939 + | hypothetical protein TERM 1147 1232979 - 1233027 + F 100 -12.1 -4.75472 | opp_overlap 1232989 1232997, overlap 1232982 1232983 1232997 TTTACCATATATTCT TCTATATAAACTAAAAAAGCAGA GTT TCTGCTTTTTTAGTTTATAATTA TTTTGTTGATATCAC TERM 1148 1232982 - 1233024 + F 100 -18.2 -4.47491 | opp_overlap 1232989 1232997, overlap 1232979 1232983 1232997 ACCATATATTCTTCT ATATAAACTAAAAAAGCAGA GTT TCTGCTTTTTTAGTTTATAA TTATTTTGTTGATAT TERM 1149 1232983 - 1233023 + F 100 -21.7 -3.26868 | opp_overlap 1232989 1232997, overlap 1232982 1232979 1232997 CCATATATTCTTCTA TATAAACTAAAAAAGCAGA GTT TCTGCTTTTTTAGTTTATA ATTATTTTGTTGATA TERM 1150 1233017 - 1232989 - f 100 -16.3 -4.03413 | opp_overlap 1232983 1232982 1232979 1232997, overlap 1232997 ATTCTTCTATATAAA CTAAAAAAGCAGA GTT TCTGCTTTTTTAG TTTATAATTATTTTG TERM 1151 1233009 - 1232997 - f 95 -7.7 -5.4387 | opp_overlap 1232997 1232983 1232982 1232979, overlap 1232989 ATATAAACTAAAAAA GCAGA GTT TCTGC TTTTTTAGTTTATAA TERM 1152 1232997 - 1233009 + F 95 -7.7 -5.42514 | opp_overlap 1232989 1232997, overlap 1232983 1232982 1232979 ATATAAACTAAAAAA GCAGA GTT TCTGC TTTTTTAGTTTATAA napC 1233552 - 1234028 + | cytochrome c nitrite reductase small subunit nrfA 1234021 - 1235574 + | chain A, cytochrome C nitrite reductase TERM 1153 1235606 - 1235635 + T 100 -16.7 -3.15252 | opp_overlap 1235606, overlap 1235598 AATTATGATATAAAA TGAGCCCATTATA CTAG TATAATGGGCTCA TTAACTAATTAGTTT TERM 1154 1235635 - 1235606 - T 100 -16.7 -4.59027 | opp_overlap 1235598 1235606 AATTATGATATAAAA TGAGCCCATTATA CTAG TATAATGGGCTCA TTAACTAATTAGTTT lysC 1236898 - 1235666 - | aspartate kinase LI1004 1237505 - 1236903 - | ATPase or kinase truB 1237651 - 1238547 + | pseudouridine synthase TERM 1155 1238861 - 1238876 + F 100 -10.4 -5.33331 | AATAATTGTTTTATT GGGGGA GAAT TCCCCC TTTTTATTATATTTA TERM 1156 1238894 - 1238922 + F 91 -12.1 -3.25491 | opp_overlap 1238897 1238900, overlap 1238894 1238900 TTTATTATATTTATA TTATAATCTATAA ATT TTATAGATTATAA TTAGTAGTATAAATT TERM 1157 1238919 - 1238897 - f 75 -9.4 -2.65993 | opp_overlap 1238894 1238894 1238900, overlap 1238900 ATTATATTTATATTA TAATCTATAA ATT TTATAGATTA TAATTAGTAGTATAA TERM 1158 1239204 - 1239222 + G 83 -6 -5.055 | CAGTTTGTTCTCAAC CCCTTG AGTCTGA CAAGGG TTTTTTCCCCCTTAC pnpA 1239053 - 1241263 + | polynucleotide phosphorylase/polyadenylase TERM 1159 1241334 - 1241295 - T 73 -8.8 -2.90212 | opp_overlap 1241297, overlap 1241326 CTACTAGGTTATATA GGCTGATTGATTCTTCTT ACTA AAGAAAAATCAATCAGTT TTGATTATACTATAT TERM 1160 1241297 - 1241332 + T 100 -13.6 -4.51777 | opp_overlap 1241295 1241326 ACTAGGTTATATAGG CTGATTGATTCTTCTT ACTA AAGAAAAATCAATCAG TTTTGATTATACTAT gatB 1242812 - 1241379 - | aspartyl/glutamyl-tRNA amidotransferase subunit B TERM 1161 1242038 - 1242057 + g 70 -8 -3.29043 | overlap 1242022 1242019 TATCTCTCATAGGGG TAGTGATA TCTT TATCACTA TTATAAAGACGAGTT LI1008 1243469 - 1242831 - | hypothetical protein TERM 1162 1242910 - 1242930 + g 73 -7.6 -3.82097 | TAAAGTTTAGGTTTT CGGATTCC TTGGT GGAATTCG TTTACTAGGTTTAGG yfjB 1244963 - 1244106 - | sugar kinase TERM 1163 1244714 - 1244728 + g 73 -4.3 -4.89063 | opp_overlap 1244714 CTTGTCCAAAGTTAA TACCT AAAAC AGGTA TTTGTTTTTCAATAA TERM 1164 1245097 - 1245076 - H 75 -8.9 -3.21671 | overlap 1245074 ATCATTAAAGATATA TGTTATCTT AGTT AAGATAACA AGCTATAATAAAGAA gmhA 1245221 - 1245856 + | phosphoheptose isomerase hemC 1246200 - 1247129 + | porphobilinogen deaminase TERM 1165 1247944 - 1247933 - g 82 -3 -5.61596 | ATCTGCAGAAAAAAA TCTT GATC AAGA AGTAATTACAAATCT TERM 1166 1249542 - 1249561 + G 75 -5 -4.83615 | opp_overlap 1249557, overlap 1249544 GATATGCCTTCAGGC CGTCCTTT AAAA AAAGGAGG TTTTTCTCCAAACTC TERM 1167 1249570 - 1249557 - g 79 -3.8 -5.40072 | opp_overlap 1249544 1249542 CGTCCTTTAAAAAAA GGAG GTTTTT CTCC AAACTCGTTATATGA lon 1247217 - 1249670 + | ATP-dependent protease nar 1250893 - 1249691 - | major facilitator superfamily permease LI1014 1251229 - 1251711 + | hypothetical protein TERM 1168 1253016 - 1253026 + G 71 -3.2 -5.07652 | AAAGCAGTAGCTGAA CAGC ATG GTTG TTTTATTTTAACAGC gmpA 1251726 - 1253258 + | phosphoglyceromutase TERM 1169 1253530 - 1253568 + T 100 -19.4 -4.86861 | opp_overlap 1253530 1253534 1253538, overlap 1253534 ATACAAACCTTAAAA TAAATAAAGACTGAAAAA ATT TTTTTCAGTCTTTATTTA TTTATTTATTTGTTA TERM 1170 1253568 - 1253530 - T 100 -19.4 -4.26792 | opp_overlap 1253530 1253534, overlap 1253534 1253538 ATACAAACCTTAAAA TAAATAAAGACTGAAAAA ATT TTTTTCAGTCTTTATTTA TTTATTTATTTGTTA TERM 1171 1253564 - 1253534 - T 100 -15.8 -4.69559 | opp_overlap 1253530 1253534, overlap 1253530 1253538 AAACCTTAAAATAAA TAAAGACTGAAAAA ATT TTTTTCAGTCTTTA TTTATTTATTTATTT TERM 1172 1253534 - 1253564 + T 100 -15.8 -4.88895 | opp_overlap 1253534 1253530 1253538, overlap 1253530 AAACCTTAAAATAAA TAAAGACTGAAAAA ATT TTTTTCAGTCTTTA TTTATTTATTTATTT TERM 1173 1253560 - 1253538 - T 100 -12.2 -4.8743 | opp_overlap 1253534 1253530, overlap 1253534 1253530 CTTAAAATAAATAAA GACTGAAAAA ATT TTTTTCAGTC TTTATTTATTTATTT LI1016 1253965 - 1253603 - | hypothetical protein TERM 1174 1253662 - 1253698 + g 79 -4 -5.42259 | gap 1, opp_overlap 1253652 TTGAAGTTGCTTGTC CAACAGATAGTTTATAA CCTT TTA-AAACTTTTTGTTG TTTTTTTGAAGCTGA LI1017 1254572 - 1253967 - | hypothetical protein rfaQ 1256223 - 1254631 - | ADP-heptose:LPS heptosyltransferase TERM 1175 1256288 - 1256277 - R 72 -3 -5.36364 | overlap 1256269 CTAAAAAGATAAAAA TATC AGAT GATA GAAGATAGTAAGGAA TERM 1176 1256419 - 1256435 + r 75 -9.5 -2.65264 | overlap 1256421 TTGAACTGCTGACCT CATCCTT ACC AAGGATG TGCTCTACCTACTGA lpxA 1257321 - 1256500 - | UDP-N-acetylglucosamine acyltransferase fabZ 1257782 - 1257321 - | (3R)-hydroxymyristoyl-(acyl-carrier-protein) dehydratase lpxD 1258817 - 1257792 - | UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase TERM 1177 1258229 - 1258243 + g 93 -4.3 -6.01725 | CTTTAATAATTACAT TTCCT ACTTG AGGAA TTTTTTGTTTTTCTT TERM 1178 1258677 - 1258648 - G 77 -8.6 -3.63464 | opp_overlap 1258648 1258647 1258646, overlap 1258646 1258649 1258651 TTTGAAAGAATAATA GCACCAGCCTGT GACAAA ACAAGCTGGTGA ATATATTTAGCATTT TERM 1179 1258676 - 1258649 - G 84 -12.1 -2.77355 | opp_overlap 1258648 1258647 1258646, overlap 1258648 1258646 1258651 TTGAAAGAATAATAG CACCAGCCTGT GACAAA ACAAGCTGGTG AATATATTTAGCATT LI1022 1259381 - 1258821 - | Outer membrane protein TERM 1180 1259143 - 1259171 + g 73 -4.6 -4.87803 | opp_overlap 1259143 GCTTGGTTAGACATA GCTGCTGACTTA GCTTG TAAATCATCAGC TTTTGTTTGCAAATC TERM 1181 1259180 - 1259192 + g 74 -6.3 -4.44355 | overlap 1259173 CATCAGCTTTTGTTT GCAAA TCT TTTGC TTGTTTTTCAAGTTG amiA 1261328 - 1259526 - | N-acetylmuramoyl-L-alanine amidase TERM 1182 1260410 - 1260427 + g 87 -9.9 -3.90511 | overlap 1260406 GTTTTGTGACAGTTG GAGTGGA GAGA TCCACTC TTAGTTTTTCTAGTT LI1024 1264125 - 1261471 - | Outer membrane protein/protective antigen OMA87 TERM 1183 1262213 - 1262231 + g 77 -3.1 -5.40474 | opp_overlap 1262213, overlap 1262215 ATAGGGTGAAATAGA CGTATGG TATCT CCATAAG TTTTTTTACGGAAGT TERM 1184 1262471 - 1262487 + g 75 -7.3 -4.11692 | CCTGTGATTGCACCT GTTCGAG CTT CTTGAAC TTTTACAAGTAGATC TERM 1185 1263054 - 1263040 - G 76 -10 -2.9518 | opp_overlap 1263030, overlap 1263032 TTGAATATCTACATA GCCATG ATT CATGGC ATAGGCAGAGATTGC TERM 1186 1263207 - 1263219 + g 77 -4.9 -5.1848 | CTTCAATTCGGACAT CTTTA ATA TAAAG TTTTTTCCCTTCATT lolD 1264825 - 1264118 - | ABC-type transport system, involved in lipoprotein release, permease component lolC 1266111 - 1264828 - | ABC-type transport system, involved in lipoprotein release, permease component lysU 1267484 - 1266111 - | lysyl-tRNA synthetase (class II) LI1028 1268376 - 1269200 + | phosphate-binding protein TERM 1187 1269417 - 1269440 + G 93 -4.5 -6.13 | overlap 1269415 1269421 TGAAGGCTATTTTGG GATCCTTCC TATGTT GGGAGGTTC TTTTTTTTTAGCTAT TERM 1188 1269421 - 1269437 + G 77 -5.1 -5.09685 | overlap 1269415 1269417 GGCTATTTTGGGATC CTTCCTA TGT TGGGAGG TTCTTTTTTTTTAGC pstC 1269253 - 1270083 + | phosphate transporter permease PstC TERM 1189 1270416 - 1270450 + G 70 -2.3 -5.39221 | gap 1, overlap 1270421 1270423 CTAGTTGATATCCTT TCAGGT-ATTCCATCA ATTG TGATGGGATTATTTGG TTTTTTACTTATTAT TERM 1190 1270423 - 1270442 + G 78 -7.2 -4.30001 | overlap 1270421 1270416 ATATCCTTTCAGGTA TTCCATCA ATTG TGATGGGA TTATTTGGTTTTTTA TERM 1191 1270711 - 1270728 + G 78 -7 -4.32402 | TAGCTATTAGTCGTT CTGCTG AAGATA CAGCAG TTATTTTACTTACAG pstA 1270080 - 1270970 + | phosphate ABC transporter, permease protein TERM 1192 1271040 - 1271054 + G 76 -4.3 -5.20333 | opp_overlap 1271034 1271031 ATATAACTATGGATA TTCCA AGTCA TGGAA TTTTTGTTATAACTG pstB 1270961 - 1271734 + | phosphate ABC transporter ATP-binding protein TERM 1193 1271814 - 1271827 + T 86 -6.7 -5.09221 | opp_overlap 1271809 1271813, overlap 1271809 CGCTAAAAATTAAGG TGGCT TATA AGCCA TTTATTTTTATTATA LI1032 1272293 - 1271838 - | hypothetical protein LI1033 1273890 - 1272481 - | hypothetical protein LI1034 1275641 - 1274250 - | hypothetical protein TERM 1194 1274371 - 1274394 + g 71 -3.2 -5.07652 | overlap 1274378 TCTTCTAACTGTTCT TTGACTTCTT CTAT AAGAAGTTGG TTTTCTTTTAAGAAG TERM 1195 1274783 - 1274799 + g 78 -2.3 -5.73339 | CTTCAGGAACAGCTT TAATAGG GCC CTTATTG TTTTTTTGTGCTTCT TERM 1196 1275458 - 1275478 + g 79 -9.1 -3.46285 | TTCCATATGTGGCTT GATATGCTG TGA TAGCATATC TTACTATTTCAGATA TERM 1197 1275629 - 1275607 - G 84 -6.4 -5.17576 | GATGAACCCAAAAAA TCAAAAATAC CCT GTATTGTTGA GCTAATAGGCATAGT LI1035 1277317 - 1276286 - | hypothetical protein TERM 1198 1276944 - 1276966 + g 75 -10 -2.67364 | opp_overlap 1276947, overlap 1276943 1276942 ACATCAGAGGTGGAA GTATTTGGAG TAT CTTCAAATAC AGTTTTTAATAATCT LI1036 1278403 - 1277447 - | hypothetical protein LI1037 1279566 - 1278568 - | hypothetical protein LI1038 1280561 - 1279875 - | hypothetical protein TERM 1199 1280027 - 1280049 + g 78 -2.1 -5.75538 | GAAGCAAGTAAGATT TATCTATTT CGTCT ATATAGATA TTTTTATTTTTTAAC TERM 1200 1280876 - 1280830 - R 100 -10.7 -5.06472 | opp_overlap 1280830 1280837, overlap 1280837 ATAGAAATAATAAAA CAAAAAACAGTTGCAT-TGATAT AAT ATATCAGAT-CAACTGTTTTCTG TTCTTTTAAGAAGCT TERM 1201 1280830 - 1280876 + r 93 -10.4 -4.17316 | opp_overlap 1280830 1280837, overlap 1280837 ATAGAAATAATAAAA CAAAAAACAGTTGCATTGATAT AAT ATATCAGATCAACTGTTTTCTG TTCTTTTAAGAAGCT TERM 1202 1280869 - 1280837 - R 100 -5.2 -5.92399 | opp_overlap 1280830 1280837, overlap 1280830 TAATAAAACAAAAAA CAGTTGCAT-TGATAT AAT ATATCAGAT-CAACTG TTTTCTGTTCTTTTA TERM 1203 1280837 - 1280869 + r 82 -7.1 -4.88288 | opp_overlap 1280837 1280830, overlap 1280830 TAATAAAACAAAAAA CAGTTGCATTGATAT AAT ATATCAGATCAACTG TTTTCTGTTCTTTTA LI1039 1282206 - 1281061 - | hypothetical protein TERM 1204 1281830 - 1281840 + g 77 -5.4 -4.8667 | ACTTCAGGCTTCAAT GCTT TCA AAGC TTTTTCTAAAATATC LI1040 1283466 - 1282447 - | hypothetical protein TERM 1205 1282807 - 1282823 + g 76 -3.7 -5.38321 | opp_overlap 1282807 AGTGACTTGAACAAC TGAATCT CCT AGTTTCA TTTTTTCTGATCTTT TERM 1206 1282936 - 1282948 + g 76 -7.7 -3.89881 | opp_overlap 1282936 TACTGATTCTAAGCA TCCAG TCA CTGGA TTTATAGAGCTTAGT LI1041 1284554 - 1283628 - | hypothetical protein TERM 1207 1284319 - 1284333 + g 71 -8.6 -3.14146 | opp_overlap 1284316, overlap 1284329 ATTATTTTATAATTT TGGTGT CTA ACACCA TTAAGTGGTGTTCTC LI1042 1286004 - 1285000 - | hypothetical protein TERM 1208 1285829 - 1285811 - G 83 -10.4 -3.28924 | overlap 1285814 GAGCTTTTTGTACAA TAAGAGCT AAT AGCTCTTA CAGCTTCAGAAATAC TERM 1209 1285826 - 1285814 - G 73 -7.7 -3.78934 | overlap 1285811 CTTTTTGTACAATAA GAGCT AAT AGCTC TTACAGCTTCAGAAA TERM 1210 1286185 - 1286152 - R 90 -11.5 -3.09655 | opp_overlap 1286156, overlap 1286156 TTACATATATATATA TTAATATTATTTTAA CTAG TTAAAATAATATTAA TCATAGTATAATATA TERM 1211 1286156 - 1286181 + r 70 -7.9 -3.24188 | opp_overlap 1286152 1286156 ATATATATATATTAA TATTATTTTAA CTAG TTAAAATAATA TTAATCATAGTATAA TERM 1212 1286181 - 1286156 - R 72 -7.9 -3.37057 | opp_overlap 1286156, overlap 1286152 ATATATATATATTAA TATTATTTTAA CTAG TTAAAATAATA TTAATCATAGTATAA TERM 1213 1286316 - 1286280 - R 100 -9.7 -5.34365 | opp_overlap 1286286, overlap 1286281 TTAGAATAATAAAAA GTATAATGACCATCT TAATAGT AGATGGTCATTATAA ATAAAAAGAAAAGAA TERM 1214 1286315 - 1286281 - R 100 -13.2 -3.78992 | opp_overlap 1286286, overlap 1286280 TAGAATAATAAAAAG TATAATGACCATCT TAATAGT AGATGGTCATTATA AATAAAAAGAAAAGA TERM 1215 1286286 - 1286310 + r 75 -8.7 -3.35679 | opp_overlap 1286281 1286280 TAATAAAAAGTATAA TGACCATCT TAATAGT AGATGGTCA TTATAAATAAAAAGA hprA 1287339 - 1286368 - | lactate dehydrogenase and related dehydrogenases LI1044 1288035 - 1287421 - | hypothetical protein pqiB 1288997 - 1288038 - | paraquat-inducible protein B TERM 1216 1288549 - 1288538 - G 79 -4.4 -5.252 | TACCTTTATAAAAAA CAAC ATGT GTTG TGTCCATTTGTGATT LI1046 1289782 - 1288994 - | ABC-type transport system involved in resistance to organic solvents, ATPase component TERM 1217 1289313 - 1289329 + g 70 -2.2 -5.26875 | overlap 1289315 TCTATAGCTAGTGCT CTTGCA AGTCC TGCACG TTTTTTCATTCCACC ttg2B 1290950 - 1289790 - | ABC-type transport system involved in resistance to organic solvents, permease component grpE 1291672 - 1291103 - | molecular chaperone GrpE (heat shock protein) TERM 1218 1291842 - 1291824 - H 86 -9 -4.24342 | opp_overlap 1291813 1291824 TTTTTTATTAATAAA CCTTAATA AGT TATTAAGG TTTTTGCTCTAAACT TERM 1219 1291824 - 1291842 + H 93 -9 -4.80882 | opp_overlap 1291824, overlap 1291813 TTTTTTATTAATAAA CCTTAATA AGT TATTAAGG TTTTTGCTCTAAACT TERM 1220 1292223 - 1292265 + H 75 -7.4 -4.15654 | gap 1, opp_overlap 1292214 1292221 1292223 1292228, overlap 1292228 1292240 ACAACATTTATAATA TAAAATAAGCCAAACAGTA GTAAGA TA-TGCTTGGCTTATTTTA TTATTATTATTATTA TERM 1221 1292265 - 1292223 - H 78 -9.6 -3.28582 | gap 1, opp_overlap 1292223 1292228 1292240, overlap 1292214 1292221 1292228 ACAACATTTATAATA TAAAATAAGCCAAACAGTA GTAAGA TA-TGCTTGGCTTATTTTA TTATTATTATTATTA TERM 1222 1292260 - 1292228 - H 74 -5.1 -4.74285 | gap 1, opp_overlap 1292223 1292228 1292240, overlap 1292223 1292221 ATTTATAATATAAAA TAAGCCAAACAGTA GTAAGA TA-TGCTTGGCTTA TTTTATTATTATTAT TERM 1223 1292853 - 1292863 + G 77 -3.2 -5.52384 | opp_overlap 1292862 CTTGTACAGCGTTAT GCTT ATA GAGC TTTTTTTAATAAAGC LI1049 1292388 - 1293122 + | hypothetical protein LI1050 1293526 - 1294392 + | metal-dependent phosphoesterase TERM 1224 1294578 - 1294594 + F 93 -3 -6.32976 | TTTGTTTTAGTTAGT GGGTAT CCCTC ATACTC TTTTTTTATTTTTTT ileS 1294652 - 1297465 + | isoleucyl-tRNA synthetase lsp 1297490 - 1297984 + | lipoprotein signal peptidase LI1053 1298127 - 1299044 + | hypothetical protein cheZ 1299149 - 1299931 + | chemotaxis protein TERM 1225 1300049 - 1300069 + F 100 -9.8 -5.64274 | opp_overlap 1300051 TCCACCAAATTTTAA CACCTTAC AAGTA GTAAGGTG TTTTTTTATAAATAG TERM 1226 1301298 - 1301270 - g 74 -6.2 -4.4836 | opp_overlap 1301248 1301270 1301275, overlap 1301271 CAAGAAAATGCAAAA GGTTCTAAAATA TCTTT TATTTTAGAACA TTGGATGAAACAACA TERM 1227 1301297 - 1301271 - g 79 -9.7 -3.27389 | opp_overlap 1301270 1301275, overlap 1301270 AAGAAAATGCAAAAG GTTCTAAAATA TCTTT TATTTTAGAAC ATTGGATGAAACAAC lpxB 1300313 - 1301428 + | Lipid A disaccharide synthetase TERM 1228 1301750 - 1301798 + G 76 -6.3 -4.5032 | opp_overlap 1301764 1301779, overlap 1301764 AGAAATTTATAGTCC TGAAATACGAAAAATATTTGTTT GGC AAACAAATATTATCTGTGTATCA TTTATTATTGGTATA TERM 1229 1301784 - 1301764 - g 95 -8.5 -4.93696 | opp_overlap 1301750 1301764, overlap 1301779 CTGAAATACGAAAAA TATTTGTTT GGC AAACAAATA TTATCTGTGTATCAT TERM 1230 1301764 - 1301784 + G 77 -8.5 -3.67297 | opp_overlap 1301764 1301779, overlap 1301750 CTGAAATACGAAAAA TATTTGTTT GGC AAACAAATA TTATCTGTGTATCAT LI1056 1301682 - 1302152 + | hypothetical protein TERM 1231 1302538 - 1302565 + G 70 -4.3 -4.68209 | opp_overlap 1302538 TACAGCTAATATTAA TACAAATATTG GTATGG CTATATTTGTA TTTCTTTATTACAAT atpA 1302188 - 1302889 + | F0F1-type ATP synthase, subunit a atpC 1302949 - 1303296 + | F0F1-type ATP synthase, subunit c LI1059 1303342 - 1303977 + | redox-sensing transcriptional repressor Rex TERM 1232 1304042 - 1304059 + F 90 -7.1 -5.13521 | CTCTTAAAAAAGGTT TATTCCT TTTT AGGAATA TTTTTTGCATAATTT LI1060 1304124 - 1304564 + | flagellar biosynthesis chaperone TERM 1233 1304724 - 1304712 - g 72 -4.9 -4.72986 | TACTTCTATTAAAAA TTTTG TTA CAAAA AAAGTAGAAAGTCCA LI1061 1304581 - 1305333 + | hypothetical protein truA 1305357 - 1306130 + | tRNA pseudouridine synthase A TERM 1234 1306537 - 1306522 - g 75 -4.8 -4.96106 | overlap 1306513 1306515 TACAAATATTAAAAA TACATT TTCA AATGTA GAATTAAAAGCCATT LI1063 1306382 - 1306804 + | hypothetical protein TERM 1235 1306873 - 1306901 + F 83 -4 -5.8187 | gap 1, opp_overlap 1306873, overlap 1306864 TAATTTTTATAATAA CCACTTGTTATAA TTTA TAATAACA-GTGG TTTTTTTATTAACTA TERM 1236 1306911 - 1306924 + F 70 -3.9 -5.12916 | CAGTGGTTTTTTTAT TAACT AACA AGTTA TTTTATTCTTTTATA TERM 1237 1306969 - 1306987 + F 72 -7.5 -3.67296 | opp_overlap 1306965 1306966 1306969 AAAGAAGTAAAGTTA GGTTAAC CATTA GTTAACC TTTAAGTAGATAGTA fdhF 1307072 - 1307548 + | Fe-S-cluster-containing hydrogenase components 1 rfbD 1308496 - 1307621 - | dTDP-4-dehydrorhamnose reductase TERM 1238 1307799 - 1307779 - G 71 -7.7 -3.62275 | opp_overlap 1307778 1307781 ACTCATTAGTGGAAA TACCTTGTA TTG TACAAGATA AGTTTGCTTGTCGAA TERM 1239 1308273 - 1308259 - G 70 -7.2 -3.71848 | opp_overlap 1308259 1308257 GTGTTCTATTAATAA GTAATG CAT CATTAC TATGTGTTTCTGCAA rfbB 1309512 - 1308493 - | dTDP-D-glucose 4,6-dehydratase LI1067 1309801 - 1310592 + | cobalamin biosynthesis protein CbiK, Co2+ chelatase LI1068 1310656 - 1311624 + | hypothetical protein rnpA 1312240 - 1312479 + | RNase P protein component yidC 1312833 - 1314431 + | preprotein translocase subunit YidC jag 1314455 - 1315468 + | RNA-binding protein TERM 1240 1315792 - 1315805 + G 78 -2.4 -5.64873 | GTGGTAGAACTTCAT TGTC ATGGGG GACA TTTTTTATTATTAAC trmE 1315534 - 1316913 + | tRNA modification GTPase TrmE rncS 1316917 - 1317513 + | ribonuclease D LI1074 1317595 - 1320534 + | endonuclease TERM 1241 1320796 - 1320782 - g 73 -7.2 -4.04174 | TCCTATAGAAGCAAA CTTAAG AGC CTTAAG ACGTGAAATACAAAA ncd2 1320591 - 1321721 + | dioxygenases related to 2-nitropropane dioxygenase TERM 1242 1321775 - 1321754 - T 100 -8.8 -5.09895 | opp_overlap 1321754 TAGCTAGCTAAAAAA GGAGTAGA GCTATT TCTACTCC TTATAGTTTATTCTA TERM 1243 1321754 - 1321775 + T 83 -9.5 -3.70568 | opp_overlap 1321754 TAGCTAGCTAAAAAA GGAGTAGAG CTAT TTCTACTCC TTATAGTTTATTCTA glk 1322791 - 1321808 - | glucokinase LI1077 1323712 - 1322933 - | hypothetical protein TERM 1244 1323825 - 1323794 - H 100 -10.3 -6.11229 | opp_overlap 1323799 ATTAAAAGAAAAAAA TACGACGATCC GGAGGAGGAG GGATCGTCGTA TAGGAAGGAGGAGGA TERM 1245 1323960 - 1323948 - H 77 -9.1 -3.32022 | GCCTGTATATATTAA CGGCA CTT TGCCG ATTGAACTGCCTTGA TERM 1246 1325632 - 1325674 + G 74 -3.4 -5.22312 | overlap 1325634 TCTTATGTTACTTGA CTCAGCTGGAGCTGTTTT GCAAATG AATCCAGCTGCAGCTCAG TTTTTTCATATAAGT HydH 1324889 - 1326631 + | Signal transduction histidine kinase hydG 1326651 - 1328066 + | response regulator LI1080 1328199 - 1328615 + | hypothetical protein oppD 1329628 - 1328645 - | oligopeptide ABC transporter feoA 1330153 - 1330491 + | Fe2+ transport system protein A TERM 1247 1331510 - 1331521 + G 71 -3 -5.15634 | AAGCTAGACACTGTT CTTA CACA TAAG TTTTTTGGTCCAGTA TERM 1248 1331807 - 1331817 + G 77 -3.2 -5.47399 | GCATATATGTTAGAC CGAG TAT TTCG TTTTTTTGGGCTTCA feoB 1330619 - 1332820 + | Fe2+ transport system protein B glpC 1334038 - 1332824 - | sn-glycerol-3-phosphate dehydrogenase subunit C TERM 1249 1333360 - 1333384 + g 76 -4.3 -5.16572 | overlap 1333350 CTGCATACTGTTGGA GTATCTTACTA TTA TGGTGAGCTAC TTTTTTCCCTTCACT LI1085 1335303 - 1334050 - | anaerobic glycerol-3-phosphate dehydrogenase subunit B glpA 1336924 - 1335296 - | anaerobic glycerol-3-phosphate dehydrogenase subunit A LI1087 1337819 - 1337223 - | hypothetical protein LI1088 1338124 - 1337816 - | hypothetical protein TERM 1250 1338019 - 1338007 - G 95 -6.3 -5.7946 | GTCCTAATAAAAAAA GTAAG ATC CTTAC TGACCAAATTAGACT TERM 1251 1338860 - 1338884 + G 79 -3.7 -5.52986 | ATATTATTTATGATA CAAATGATG CTGAGCC CATTATTTG TTTTTTTGATAACAT LI1089 1338433 - 1339086 + | methyltransferase LI1090 1339149 - 1339568 + | transcription regulator LI1091 1339592 - 1340368 + | putative GTP cyclohydrolase TERM 1252 1340937 - 1340915 - g 73 -4.2 -4.8622 | GTTTGCAAGTAAAAA TTCTTCGTGT TTT ACAGGAAAAA GAGATCGAACGTGTT LI1092 1340557 - 1341606 + | response regulator LI1093 1341663 - 1344893 + | Outer membrane protein and related peptidoglycan-associated (lipo)proteins LI1094 1345964 - 1344921 - | HD-GYP domain-containing protein TERM 1253 1345175 - 1345193 + g 80 -10.4 -3.0894 | overlap 1345177 TTGGATATCCTGATC CATCAAGA CGT TCTTGATG TTCCATAACTGCTTG pykF 1347383 - 1345968 - | pyruvate kinase TERM 1254 1346963 - 1346973 + g 77 -5.4 -5.011 | CAATAAGAAGGAATG TTCC ATT GGAA TTTTGTTCTTTAACT mraZ 1347589 - 1348038 + | cell division protein MraZ LI1097 1348109 - 1349047 + | S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis TERM 1255 1351363 - 1351327 - g 77 -3.3 -5.54885 | gap 1 AAGAGGAAGAAAAAA TTAGTTCTAA-TAAGG TTTCTT CATTAGTTAGAACTAA CAAAAAAGAAAAAAG ftsI 1349553 - 1351634 + | cell division protein FtsI/penicillin-binding protein 2 TERM 1256 1351869 - 1351900 + G 70 -2.4 -5.31275 | gap 1 TATTGTTGTGGATGA TCCTAGATATACTTT AGG GAGGT-TAGCTAGGA TTTTTTATAATACAG murE 1351636 - 1353084 + | UDP-N-acetylmuramyl tripeptide synthase murF 1353075 - 1354469 + | UDP-N-acetylmuramyl pentapeptide synthase TERM 1257 1354691 - 1354677 - g 81 -10 -3.42659 | opp_overlap 1354674, overlap 1354671 AGTCAAAGACAGGAA CTCCCA CTA TGGGAG GAGTTCTTATATGTT mraY 1354469 - 1355545 + | UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase murD 1355559 - 1356881 + | UDP-N-acetylmuramoylalanine-D-glutamate ligase spoVE 1356868 - 1358016 + | cell division membrane protein murG 1358021 - 1359112 + | UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase TERM 1258 1359595 - 1359608 + G 74 -3.1 -5.33124 | ATTGCTGAGGCCGAT GAATC AGAT GGTTC TTTTCTTTTATTGTT murC 1359109 - 1360470 + | UDP-N-acetylmuramate-alanine ligase TERM 1259 1361327 - 1361301 - g 74 -6.1 -4.60746 | gap 1 GTAAAAACAGTAAAA TAGCAT-TTGAA CTTG TTCAAGATGCTA AGCAAGAAGTTCAAA LI1106 1360502 - 1361392 + | UDP-N-acetylmuramate dehydrogenase ftsQ 1361386 - 1362213 + | cell division septal protein ftsA 1362407 - 1363639 + | cell division protein FtsA ftsZ 1363691 - 1365073 + | cell division protein FtsZ TERM 1260 1365098 - 1365124 + F 80 -8.1 -4.10178 | opp_overlap 1365104, overlap 1365104 TATAGCATAATAAAT AAAAAACCCCA TTAAT TGGGGTTTTTA TTTCTAATCTTATTA TERM 1261 1365118 - 1365104 - f 100 -7.1 -5.82036 | opp_overlap 1365098 1365104 ATAATAAATAAAAAA CCCCA TTAAT TGGGG TTTTTATTTCTAATC TERM 1262 1365104 - 1365118 + F 95 -7.1 -5.40464 | opp_overlap 1365104, overlap 1365098 ATAATAAATAAAAAA CCCCA TTAAT TGGGG TTTTTATTTCTAATC LI1110 1365182 - 1365661 + | hypothetical protein LI1111 1366440 - 1365658 - | amidophosphoribosyltransferases LI1112 1367042 - 1366446 - | multimeric flavodoxin WrbA argF 1368020 - 1367118 - | ornithine carbamoyltransferase LI1114 1370053 - 1368164 - | parvulin-like peptidyl-prolyl isomerase TERM 1263 1368546 - 1368559 + g 91 -5.3 -5.86609 | TCTGCTGCTTTCATG GCTAA CTCG TTAGC TTTTTGTTTTTTTAA flbD 1371827 - 1370349 - | response regulator TERM 1264 1372974 - 1372986 + G 71 -6.3 -4.14615 | opp_overlap 1372983, overlap 1372983 TTGGTTTCTGGTCAT GATCT GAA AGATC TTTATGATCTTTTAT priS 1372257 - 1373870 + | hydroxylamine reductase TERM 1265 1373927 - 1373968 + F 95 -7.5 -5.28561 | opp_overlap 1373939, overlap 1373910 1373932 1373935 1373937 TAACTATGAGTAAGT TATATTGATAGAGTCTCTT GCAA AAGAGACTCTGTTCATTTA TTTTTATTATGTATT TERM 1266 1373932 - 1373964 + F 100 -9.4 -5.09221 | gap 1, opp_overlap 1373939, overlap 1373927 1373935 1373937 ATGAGTAAGTTATAT TGA-TAGAGTCTCTT GCAA AAGAGACTCTGTTCA TTTATTTTTATTATG TERM 1267 1373935 - 1373960 + F 95 -11.3 -3.8823 | opp_overlap 1373939, overlap 1373932 1373927 1373937 AGTAAGTTATATTGA TAGAGTCTCTT GCAA AAGAGACTCTG TTCATTTATTTTTAT TERM 1268 1373937 - 1373958 + F 91 -11.7 -3.49008 | opp_overlap 1373939, overlap 1373935 1373932 1373927 TAAGTTATATTGATA GAGTCTCTT GCAA AAGAGACTC TGTTCATTTATTTTT TERM 1269 1373956 - 1373939 - f 71 -8.5 -2.9356 | opp_overlap 1373937 1373935 1373932 1373927 AGTTATATTGATAGA GTCTCTT GCAA AAGAGAC TCTGTTCATTTATTT cheV 1374180 - 1375139 + | chemotaxis signal transduction protein LI1118 1375188 - 1375997 + | hypothetical protein gapB 1377148 - 1376132 - | glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase TERM 1270 1376375 - 1376387 + g 85 -6.3 -5.35815 | TGCCTTGCGGATTGT TTCAG TGT CTGAA TTTTTCTTTAATATA TERM 1271 1377052 - 1377064 + g 71 -6.3 -4.09519 | opp_overlap 1377052 GATCATTAACAGCAA CAACT TCT AGTTG TTCTTTATACATAGT proC 1378307 - 1377471 - | pyrroline-5-carboxylate reductase TERM 1272 1377826 - 1377809 - G 73 -7.1 -4.07568 | GCTTTTCTGGCAAAA TTATTGG TAAT CCAATAA GAGAAAATAGATCAA ndk 1378723 - 1378307 - | nucleoside-diphosphate kinase LI1122 1380090 - 1378753 - | hypothetical protein TERM 1273 1379834 - 1379858 + g 88 -7.1 -4.87626 | opp_overlap 1379833 1379834 GTGTGTAGGAAAGAC TCCCTATAGGA TTG TCCTTTTGGGA TTTTTAATGTTGAAA prc 1381724 - 1380396 - | periplasmic protease TERM 1274 1380591 - 1380612 + g 73 -4.5 -4.87328 | gap 1 TTTACGTAAATCTTG CTCTC-TCAT CAT ATGAAGAGGG TTTTGTGTTTGTGTA TERM 1275 1380854 - 1380826 - G 80 -10.3 -3.04792 | opp_overlap 1380852 1380853, overlap 1380839 1380853 TTATGATCTCCAAGA GCTCCTGCAACAA TTT CTGATGCAGAAGC AGAGCCTGCATTTAC nth 1382472 - 1381792 - | endonuclease III, putative TERM 1276 1382436 - 1382455 + g 72 -5.8 -4.43877 | ATTTTTCGTATATTT CTATTAAG ATAG CTTGATAG TTTATTTCAGGGTTC copA 1385270 - 1382916 - | copper-translocating P-type ATPase TERM 1277 1384956 - 1384981 + g 93 -7.7 -5.4505 | opp_overlap 1384958, overlap 1384958 CTCTAAGTAATGAGA GATGGATTCTT GTTG AAGAATCCATG TTTTTTGTTCAGCAA TERM 1278 1384979 - 1384958 - G 80 -10.3 -3.03554 | opp_overlap 1384958 1384956 CTAAGTAATGAGAGA TGGATTCTT GTTG AAGAATCCA TGTTTTTTGTTCAGC TERM 1279 1384958 - 1384979 + g 100 -10.3 -4.36592 | opp_overlap 1384958, overlap 1384956 CTAAGTAATGAGAGA TGGATTCTT GTTG AAGAATCCA TGTTTTTTGTTCAGC LI1126 1385472 - 1385933 + | RNA methyltransferase LI1127 1385991 - 1387358 + | Na+-driven multidrug efflux pump LI1128 1387436 - 1388335 + | hypothetical protein TERM 1280 1389073 - 1389085 + G 78 -7.7 -4.25283 | CTATGGTTTGTGTTA CCCAT GAA ATGGG TTTTGCTCGAGAAGT glnQ 1388490 - 1389227 + | ABC-type polar amino acid transport system, ATPase component TERM 1281 1389704 - 1389691 - g 73 -4.5 -5.0133 | CATTGTGCTAAAAAA GGCTA TCTT CAGCC AGGAATGCGGTTTTT LI1130 1389244 - 1390113 + | ribosomal protein L11 methylase secG 1390486 - 1390148 - | preprotein translocase subunit SecG tpiA 1391340 - 1390582 - | triosephosphate isomerase rimJ 1391830 - 1391360 - | acetyltransferase TERM 1282 1391657 - 1391647 - G 72 -2.6 -5.35815 | opp_overlap 1391647 TATAGTAAATAAAAA TATA GCC TATA AGTTTTTTACAGTAT TERM 1283 1392173 - 1392189 + G 70 -3.7 -5.00196 | opp_overlap 1392187, overlap 1392187 CCTAGATCCTATTTT TTCCCTT TGC AAGAGAA TTTTATTCTTTCCAC LI1134 1391831 - 1392370 + | NTP pyrophosphohydrolases including oxidative damage repair enzymes mreB 1393421 - 1392420 - | Actin-like ATPase involved in cell morphogenesis TERM 1284 1393031 - 1393006 - G 78 -10.5 -2.63102 | opp_overlap 1393009, overlap 1393013 AGGACTGGTAGACTA GCACCAATAGC AGCT GCTATTGGTTC TTCAATAAGTCGAAC TERM 1285 1393009 - 1393028 + g 89 -10.8 -3.68569 | opp_overlap 1393006 1393013 ACTGGTAGACTAGCA CCAATAGC AGCT GCTATTGG TTCTTCAATAAGTCG LI1136 1394458 - 1393424 - | hypothetical protein TERM 1286 1395198 - 1395182 - g 74 -6.6 -4.32034 | GCAGCACGAGCAAAA CGCTTT CCATT AAAGCG GATAAGGAAAGATAA cheB 1394777 - 1395850 + | chemotaxis response regulator TERM 1287 1395979 - 1395947 - g 73 -7.7 -3.86684 | opp_overlap 1395935 ATAAGTCAGATGAAA TTCGTTCTGCAGCTT TTG AAGCAGCTGAACTAA AGGCTTCTGACAGTA LI1138 1395874 - 1397826 + | hypothetical protein TERM 1288 1398574 - 1398560 - g 73 -4.2 -5.01811 | opp_overlap 1398560, overlap 1398554 TGATGAAATGAAAAA GCAGGT TAT ATCTGC TTTTTATGATAATCT TERM 1289 1398560 - 1398574 + G 83 -6.4 -4.93898 | opp_overlap 1398560 1398554 TGATGAAATGAAAAA GCAGGT TAT ATCTGC TTTTTATGATAATCT cheR 1397826 - 1398701 + | methylase of chemotaxis methyl-accepting proteins TERM 1290 1399026 - 1399042 + G 79 -5.2 -5.09259 | GAGAGTATATTGCAC CCTTTT AAAAG AAAAGG TTTTATTTTGAAATA soj 1398717 - 1399487 + | ATPases involved in chromosome partitioning cheW 1399691 - 1400161 + | chemotaxis signal transduction protein cheY 1400172 - 1400540 + | CheY-like receiver TERM 1291 1400746 - 1400763 + G 73 -4.1 -4.84642 | opp_overlap 1400743, overlap 1400760 TCGTCCAATGCATTC CCTTAAG GGAG CTTCAGG TTTTCTTGGTTTAAA cheA_1 1400564 - 1401208 + | chemotaxis protein histidine kinase-like kinase cheA_2 1401396 - 1403609 + | chemotaxis protein histidine kinase-like kinase TERM 1292 1404316 - 1404290 - T 77 -8.6 -3.57561 | overlap 1404291 GCGCAATGGGCGAAA GCCTGACGCAGC GAC GCCGCGTGAGGG ATGAAGGTCTTTGGA TERM 1293 1404315 - 1404291 - T 88 -12.1 -2.74322 | overlap 1404290 CGCAATGGGCGAAAG CCTGACGCAGC GAC GCCGCGTGAGG GATGAAGGTCTTTGG TERM 1294 1404536 - 1404518 - T 72 -8.8 -2.73243 | overlap 1404508 1404517 AGTCAGGGGTGAAAG CCCACCGC TTA ACGGTGGA ACAGCCTTTGATACT TERM 1295 1405436 - 1405417 - T 72 -9.2 -2.65808 | opp_overlap 1405420 1405423, overlap 1405414 AGTCGTAACAAGGTA GCCGTAGG GGAA CCTGCGGC TGGATCACCTCCTTT TERM 1296 1406155 - 1406134 - T 72 -7.3 -3.66803 | opp_overlap 1406133, overlap 1406139 CGGGAAGAGCCTAAA CCAAACAGT TTCG ACTGGTTGG GGTTGTAGGGCCGAC TERM 1297 1406397 - 1406385 - T 86 -9.1 -4.2354 | GAAAGGTGAAAAGAA CCCCT GTA AGGGG AGTGAAATAGAATCT TERM 1298 1408040 - 1408023 - T 79 -8.5 -3.6682 | overlap 1408027 TGGGAGCCAGTGAAA CCTATAC GCCA GTATAGG CGGAGGCAACCTTGA TERM 1299 1408657 - 1408645 - T 85 -10.5 -3.1634 | overlap 1408628 GCTGAAAGCATCTAA GCGGG AAG CCCGC CTCAAGATTAGTTCT TERM 1300 1408698 - 1408714 + T 85 -10.9 -3.16564 | opp_overlap 1408697 AAGAGGCTAAAGGAC CCAGGTA GAC TACCTGG TTGATAGGCTGGAGG TERM 1301 1408951 - 1408969 + T 100 -13.2 -4.19735 | opp_overlap 1408951, overlap 1408934 CTTTTTTATAAAAAA GGCTCTCT ATC AGAGAGCC TTTCCTTTTAACAAA TERM 1302 1408969 - 1408951 - T 100 -13.2 -5.24129 | opp_overlap 1408934 1408951 CTTTTTTATAAAAAA GGCTCTCT ATC AGAGAGCC TTTCCTTTTAACAAA LI1150 1411030 - 1409027 - | putative regulator TERM 1303 1411070 - 1411080 + r 76 -4 -5.48825 | CAAAATATATTAGGG CTAT TTC ATAG TTTTTTTGCATAGTA LI1151 1412671 - 1411391 - | transcriptional regulator LI1152 1413048 - 1412680 - | hypothetical protein LI1153 1414544 - 1413348 - | putative outer protein N TERM 1304 1414148 - 1414168 + g 71 -3.4 -5.05782 | overlap 1414150 CCCAAGCATCTGTTT TATTAGAA AATTG TTCTAATG TTTTTTCGAGTACAT LI1154 1415356 - 1416042 + | hypothetical protein LI1155 1416504 - 1417094 + | hypothetical protein TERM 1305 1417556 - 1417540 - f 73 -6.7 -4.02719 | overlap 1417552 CTAGTAAATATTAAA TATAGTA TTA TACTATA GTAATAGGTAGTAAA LI1156 1418018 - 1418524 + | hypothetical protein TERM 1306 1419552 - 1419562 + G 77 -5.4 -5.02074 | GGTGATAAAGAGTCC GCAA GAG TTGC TTTTTTAAGCACTGA LI1157 1419132 - 1419671 + | regulatory protein PcrH TERM 1307 1419702 - 1419690 - g 80 -9.1 -3.58905 | ATTTTGGAGATATAA GCGGA AGC TCCGC AAGAATGAGTAGCTT TERM 1308 1419965 - 1419953 - g 71 -7.7 -3.61715 | GAGGGTGGTGAAGAA GTTCC AGA GGAAC CCCCATATGTCCCTC LI1158 1419668 - 1420858 + | hypothetical protein LI1159 1420906 - 1421703 + | hypothetical protein TERM 1309 1421832 - 1421800 - f 79 -9.3 -3.51118 | opp_overlap 1421802, overlap 1421793 1421802 TAGACAAAGCTATAA TAGAGCATGTATC TAAGAAG GATACATGCTCTT TTTTATGTGTGATAT TERM 1310 1421802 - 1421830 + F 100 -12.6 -5.43414 | opp_overlap 1421800 1421793 1421802 GACAAAGCTATAATA GAGCATGTATCT AAGAA GGATACATGCTC TTTTTTATGTGTGAT TERM 1311 1421830 - 1421802 - f 90 -11.9 -3.31869 | opp_overlap 1421802, overlap 1421800 1421793 GACAAAGCTATAATA GAGCATGTATC TAAGAAG GATACATGCTC TTTTTTATGTGTGAT TERM 1312 1422645 - 1422673 + F 72 -7.7 -3.69068 | opp_overlap 1422639 1422653, overlap 1422642 1422647 ATAATATATTATTAT TTTTAATAGATAT TAA ATATCTATTAATA TATTTATTCACATAA TERM 1313 1422647 - 1422671 + F 82 -10.3 -3.4214 | opp_overlap 1422639 1422653, overlap 1422645 1422642 AATATATTATTATTT TTAATAGATAT TAA ATATCTATTAA TATATTTATTCACAT TERM 1314 1424545 - 1424532 - g 70 -2.4 -5.30448 | AAACAAATACAAAAA CATC AAAAAA GATG GAACGGCTAATACTT YscC 1422992 - 1424743 + | putative type III secretion protein YscC TERM 1315 1426061 - 1426084 + G 81 -9.6 -3.44891 | GAATTTTTAAGGGTG GGGTATTACC TAGT GGTTATACCC TTGATTCAGTTTCTT LI1161 1424743 - 1426164 + | hypothetical protein LI1162 1426377 - 1426856 + | hypothetical protein TERM 1316 1427466 - 1427480 + G 75 -7.2 -4.1157 | opp_overlap 1427459 TTCCAGAATTATCTC CAGATA AAG TATCTG TTGTTCTTGTTCCTG YscJ 1426865 - 1427701 + | putative type III secretion protein YscL 1427698 - 1428378 + | putative type III secretion protein TERM 1317 1428792 - 1428776 - gf 88 -7.3 -4.88129 | opp_overlap 1428784 AAAAATCATGAAAAA GATGACG ATT CATCATC TATAAAAGATGATGG LI1165 1428350 - 1429231 + | hypothetical protein LI1166 1429285 - 1430391 + | putative translocation protein in type III secretion TERM 1318 1430450 - 1430432 - f 72 -9 -2.73364 | opp_overlap 1430426 1430431 1430430 TGTTTATTTTAACTA CGTTATTA TGA TAATAACG GGTTGTAAGGAGTTT LI1167 1430468 - 1430806 + | anti-anti-sigma factor rsbW 1430820 - 1431263 + | sigma regulatory factor-histidine kinase TERM 1319 1431427 - 1431417 - g 72 -2.6 -5.32699 | TGAAATATTAAAAAA TATA CAA TATA CAAATAAGATAGCTG TERM 1320 1431965 - 1431946 - g 100 -10.8 -4.36914 | GGTGCTGTTATAAAA TATGGTGG TATT CCACCATA TAAAGAAACACAGGA LI1169 1431313 - 1432011 + | putative transglycosylase cheW 1432180 - 1432665 + | chemotaxis signal transduction protein TERM 1321 1432753 - 1432728 - T 100 -13.5 -5.03314 | opp_overlap 1432728 TTGATTTTTAAAAAA GAGACAACAAA GTAC TTTGTTGTCTC TTTTTAGCTCTATTC TERM 1322 1432728 - 1432753 + T 100 -13.5 -4.74453 | opp_overlap 1432728 TTGATTTTTAAAAAA GAGACAACAAA GTAC TTTGTTGTCTC TTTTTAGCTCTATTC LI1171 1434458 - 1432770 - | 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases TERM 1323 1433484 - 1433508 + g 76 -10.1 -2.81815 | opp_overlap 1433483, overlap 1433482 ATAGCTATCAAGCAG TTCTGCTATGG ATA CTATAGCAGGA TCATTACTAATTGGC TERM 1324 1434711 - 1434724 + H 74 -6.7 -4.28045 | ATATAGAGTCCTACT GGCTA TAGT TAGCC TTATTTTAATAATAT TERM 1325 1435561 - 1435571 + G 84 -5.4 -5.40072 | ATGGCTAAGAATGTG TCAC CTG GTGA TTTTTTTGAACAGGA LI1172 1434763 - 1435746 + | hypothetical protein TERM 1326 1436526 - 1436537 + G 89 -3 -5.77677 | CAAGATTGGGGAAGT TCTT TACT AAGA TTTTTTGTTATTTTA TERM 1327 1437924 - 1437952 + G 83 -6.1 -5.14698 | GAACCTATGGTAGTT TTCAGTGATTTTG CAG CAAGTTCATTGAA TTTTATTTTACGTTT LI1173 1435746 - 1438211 + | small-conductance mechanosensitive channel TERM 1328 1438411 - 1438385 - f 100 -6.7 -6.17033 | opp_overlap 1438384 1438383 1438387 AAAAAAAAGAAAAAA GACTTATTCTT TATAG AGGAATAAGTC AGTTATAGGCTAATA mltC 1438532 - 1439695 + | membrane-bound lytic murein transglycosylase C (MltC) LI1175 1439752 - 1440264 + | hypothetical protein LI1176 1441112 - 1440333 - | nitroreductase LI1177 1443982 - 1441109 - | excinuclease ABC, A subunit TERM 1329 1443232 - 1443247 + g 86 -2.6 -5.86061 | gap 1, overlap 1443231 1443232 CAGATTCTGTAGCAT GGA-TAG TAT CTATTCC TTTTTTTTCATCAGA LI1178 1445030 - 1444320 - | ABC-type cobalt transport system, permease component CbiQ and related transporters TERM 1330 1444664 - 1444648 - G 86 -5.8 -5.40072 | TGTTGCTTAAAAAAA GGACGG AGATA CCATCC TGCAGCTAGTGCTAT cbiO 1445748 - 1445008 - | ABC-type cobalt transport system, ATPase component TERM 1331 1445506 - 1445516 + g 89 -3.2 -5.88471 | TTCAACGTCTTGTAA CAGT AAT GCTG TTTTTTTTAATAGTG bioY 1446292 - 1445735 - | hypothetical protein TERM 1332 1445840 - 1445828 - G 70 -4.1 -4.66163 | ATCTCCAGGTAAAAA TGGTA ATA CACCA GTAAGAATTGCTTTT alaS 1448984 - 1446330 - | alanyl-tRNA synthetase TERM 1333 1448893 - 1448879 - G 74 -6.4 -4.41633 | CATTTGTAAAAAGAA GCGATG GGT CATCAC GTGGAATAAGAGAAG recA 1450083 - 1449016 - | recombinase A TERM 1334 1450132 - 1450160 + r 72 -6.2 -4.20106 | overlap 1450138 AATATATGAATATAA TATAAGCTGTAC TAGAT GTATAGTTTATA TTTTAGCTAAAGTTT metG 1452139 - 1450184 - | methionyl-tRNA synthetase TERM 1335 1451952 - 1451965 + g 70 -8.1 -3.22832 | opp_overlap 1451948 TGTGTTGAATATCCT GCAGC TTCT GCTGC TTGAATAATTTTTTC LI1184 1453223 - 1452273 - | uncharacterized homolog of PSP1 TERM 1336 1452422 - 1452440 + g 73 -8.2 -3.67558 | GAGGAGTAGTATGTG TGGGATGA AGT TTATCCCA TTCTTCAAGTGTGTA TERM 1337 1452543 - 1452559 + g 86 -8.1 -4.7339 | overlap 1452556 ACTACCTTGATCTGT TTGGTAA CGT TTACCAA TTTTTGGACTTTGTT TERM 1338 1453140 - 1453158 + g 80 -10.4 -3.01712 | TACAACAACTTTGTC TCCTTTCA TAA TGAAAGGA TCTTCACAAAAAAAG LI1185 1454885 - 1454268 - | hypothetical protein TERM 1339 1454979 - 1455010 + H 77 -9 -3.36326 | opp_overlap 1454974, overlap 1454978 1454975 1454980 TATAAAAATGTTAAT GTTTCTTATCATAA AATT TTATGATAAGAAAA TATATTCTTTAAATT TERM 1340 1454980 - 1455009 + H 95 -12.5 -2.60711 | opp_overlap 1454974, overlap 1454979 1454978 1454975 ATAAAAATGTTAATG TTTCTTATCATAA AATT TTATGATAAGAAA ATATATTCTTTAAAT ruvA 1455153 - 1455752 + | Holliday junction resolvasome, DNA-binding subunit ruvB 1455725 - 1456750 + | Holliday junction DNA helicase B thyX 1456767 - 1457489 + | FAD-dependent thymidylate synthase SEQUENCE gi|94972343|ref|NC_008012.1| Lawsonia intracellularis PHE/MN1-00 plasmid 1, complete sequence (length 27048) TERM 1 384 - 374 - g 77 -5.4 -4.87291 | opp_overlap 374 TACGTGAAGCAAAAA CGTT TCC AACG TTATTTGAAGCTAGT LIA001 280 - 1359 + | integrase TERM 2 1476 - 1420 - T 100 -27.3 -2.66098 | opp_overlap 1436 1440, overlap 1436 1440 AATATGTGAAATTTA TTGTTATCTATTATAAGCAATAGTCTT TAC AAGACTATTGCTTATAATAGATAACAT AGTCATAGGTATTAA TERM 3 1460 - 1436 - T 100 -14.5 -3.4252 | opp_overlap 1436 1440, overlap 1420 1440 TGTTATCTATTATAA GCAATAGTCTT TAC AAGACTATTGC TTATAATAGATAACA TERM 4 1436 - 1460 + T 100 -14.5 -3.4252 | opp_overlap 1436 1420 1440, overlap 1440 TGTTATCTATTATAA GCAATAGTCTT TAC AAGACTATTGC TTATAATAGATAACA TERM 5 1440 - 1456 + T 72 -8.1 -3.4759 | opp_overlap 1436 1420 1440, overlap 1436 ATCTATTATAAGCAA TAGTCTT TAC AAGACTA TTGCTTATAATAGAT TERM 6 1456 - 1440 - T 72 -8.1 -3.4759 | opp_overlap 1440 1436, overlap 1436 1420 ATCTATTATAAGCAA TAGTCTT TAC AAGACTA TTGCTTATAATAGAT LIA002 1920 - 1564 - | hypothetical protein LIA003 2264 - 1914 - | hypothetical protein TERM 7 2028 - 2055 + g 70 -8 -3.1676 | overlap 2026 2030 TAAATGAAGACGTTT TGTTATTTCATT TAAT AATGAAATAATA TGTTGATGACTATCT LIA004 2560 - 2889 + | hypothetical protein LIA005 5296 - 3335 - | hypothetical protein TERM 8 3931 - 3945 + g 73 -4.2 -4.84527 | opp_overlap 3933, overlap 3933 CTCTCCAACAAATAT AAGGAG TTA CTCCTA TTTTTAATATCTGCA TERM 9 4333 - 4361 + g 100 -16.3 -4.99861 | opp_overlap 4333 4340 ATGCAGCAACAGAAA GAAGAAAGACATT TAA AATGTCTTTCTTC TTTTTATCGTTAATA TERM 10 4361 - 4333 - G 100 -16.3 -4.24075 | opp_overlap 4333, overlap 4340 ATGCAGCAACAGAAA GAAGAAAGACATT TAA AATGTCTTTCTTC TTTTTATCGTTAATA TERM 11 4354 - 4340 - G 83 -7.2 -4.66814 | opp_overlap 4333, overlap 4333 AACAGAAAGAAGAAA GACATT TAA AATGTC TTTCTTCTTTTTATC TERM 12 5349 - 5331 - R 74 -4.6 -4.9792 | TAGTTTATATAAAAA TTCCCT TAAGAAG AGGGAA GAAATATATAAACTA LIA006 6476 - 5817 - | hypothetical protein TERM 13 6760 - 6772 + r 71 -2.7 -5.60993 | TATATATATAACTAT TAGTA GGA TACTG TTTTTTTGTACAAAA LIA007 7245 - 6841 - | hypothetical protein TERM 14 7019 - 6993 - G 90 -8.1 -4.99568 | opp_overlap 6993 GAATACTAAACAAAA TAGGAGGAAAA TATGT TTTACCTCCTA TTTCTTGAGAAAAAC TERM 15 6993 - 7019 + g 81 -8.1 -4.15044 | opp_overlap 6993 GAATACTAAACAAAA TAGGAGGAAAA TATGT TTTACCTCCTA TTTCTTGAGAAAAAC mvaK1 8276 - 7296 - | putative galactokinase/mevalonate kinase TERM 16 7453 - 7469 + g 70 -2.1 -5.25803 | opp_overlap 7453 AGCTTCCCTCCAATA GCGCCTG CAT CAAGAGC TTTTTTATACCAATT LIA009 9590 - 8304 - | hypothetical protein LIA010 10622 - 9603 - | Cps2K TERM 17 10085 - 10071 - G 73 -3.6 -5.20783 | AGCCAAAGATAAAAA GAAAAT ACA ATCTTC ATAGGCAGATATAGG LIA011 11360 - 10908 - | S-adenosylmethionine-dependent methyltransferase TERM 18 11303 - 11321 + g 89 -7.6 -5.23316 | TTTTATAATTTTTAG TATGAATA ATA TATTCATA TTTTTTAGTATCATC LIA012 12091 - 11381 - | hypothetical protein LIA013 12882 - 12124 - | biotin synthesis protein BioC TERM 19 13019 - 12999 - R 71 -2.5 -5.61913 | opp_overlap 12999 AATAAATATAAAAAA GATAAAGGT TGT ACCAATATC TTTTTAAATAAATAT LIA014 13909 - 13079 - | trans-aconitate methyltransferase LIA015 15080 - 13950 - | hypothetical protein TERM 20 15216 - 15197 - R 72 -8 -3.32279 | overlap 15195 15208 TATTATAATAAGATA TAGATAGA TAAC TCTATCTA AAGTAGAGTAAAAAT LIA016 16061 - 15288 - | hypothetical protein TERM 21 15482 - 15471 - G 81 -5.8 -4.83722 | AATAGGATAATAAAA TGGG AATC CCCA ATAAAAAGCATTGAG TERM 22 15967 - 15953 - G 75 -7.2 -4.10007 | opp_overlap 15966, overlap 15966 ACAATTTTTTTAAAA GGTATA AAA TATACC TAGCAGCAAGGCTAT bchE 17518 - 16055 - | Fe-S oxidoreductase LIA018 17906 - 17553 - | hypothetical protein TERM 23 17786 - 17772 - G 75 -8.6 -3.52113 | opp_overlap 17772, overlap 17765 CCCTAAAATCCATAA GTAACC GCT GGTTAC TATATAGCAAATCCC gmhA 18493 - 17912 - | phosphoheptose isomerase TERM 24 18063 - 18073 + g 73 -4 -5.10461 | CCAGTTAAACTTACA CAAA AAA TTTG TTTTTCTTGCATAGA LIA020 18888 - 18514 - | hypothetical protein TERM 25 18861 - 18849 - G 71 -6.3 -4.22352 | TAAAGAAAAATATAA TTCCT AAA AGGAA AACAATAGTTATATG LIA021 19275 - 18943 - | hypothetical protein LIA022 19784 - 19278 - | cell wall biosynthesis glycosyltransferase TERM 26 19305 - 19326 + g 79 -4.6 -5.2696 | opp_overlap 19305 19318 ACTCCATATAAAAAG TTCTTTTA CTATAT TAAAAGAA TTTTTTAACTTTTGC galE 21061 - 20042 - | nucleoside-diphosphate-sugar epimerases LIA024 21898 - 21140 - | cell wall biosynthesis glycosyltransferase LIA025 22320 - 21988 - | plasmid stabilization system protein protein LIA026 22588 - 22310 - | hypothetical protein LIA027 24147 - 23098 - | hypothetical protein LIA028 24353 - 25753 + | hypothetical protein LIA029 25951 - 26709 + | chromosome-partitioning ATPase SEQUENCE gi|94972373|ref|NC_008013.1| Lawsonia intracellularis PHE/MN1-00 plasmid 2, complete sequence (length 39794) LIB001 404 - 691 + | hypothetical protein TERM 1 1023 - 1039 + T 72 -4.3 -5.08011 | opp_overlap 1023 1034 TCATTAAATAAAAAA GCATCCT AGA AGGGCGC TTTTTTCACCCTTTT TERM 2 1039 - 1023 - T 82 -4.3 -5.68438 | opp_overlap 1023, overlap 1034 TCATTAAATAAAAAA GCATCCT AGA AGGGCGC TTTTTTCACCCTTTT LIB002 2513 - 2232 - | PbsX family transcriptional regulator TERM 3 2621 - 2565 - H 100 -18 -3.12923 | opp_overlap 2581, overlap 2563 2613 ATTATTAAAATGACA TACCAGGTATTTATAATTTATTAATT GAATG AGTTAATAAATTATAAATACCTGATA AGGGCTAATATTTAT TERM 4 2720 - 2679 - H 77 -7.5 -4.36366 | opp_overlap 2684, overlap 2684 GATAAAACACACAAA TAAAAGTATAGGGAGTT CCTCCAAT ACCTCCCTATACTTTTT TATATCTTGAATAAT TERM 5 2715 - 2684 - H 90 -7.4 -5.08878 | opp_overlap 2684, overlap 2679 AACACACAAATAAAA GTATAGGGAGTT CCTCCAAT ACCTCCCTATAC TTTTTTATATCTTGA TERM 6 2684 - 2715 + H 100 -7.4 -5.47431 | opp_overlap 2679 2684 AACACACAAATAAAA GTATAGGGAGTT CCTCCAAT ACCTCCCTATAC TTTTTTATATCTTGA TERM 7 3449 - 3419 - g 82 -4.2 -5.46629 | gap 1, overlap 3421 AAGAGCCTAAAAAAA TAGACATGA-CTA CAATGT TAGCTCATGTCCA CTGGGATGAAGAAAA TERM 8 3495 - 3465 - g 83 -7 -4.71426 | opp_overlap 3465, overlap 3460 CTGGGATGAAGAAAA GAAAGAATTATCAG CAA CTATTAATCCTTTC TTTTATGAATCTTAT TERM 9 3627 - 3612 - g 82 -7.6 -4.63184 | opp_overlap 3612 3611, overlap 3587 AAGCCATCGTAAAAA TCCTGT ATTT ACAGGA CATTTTTTGACACTT LIB003 2785 - 3822 + | hypothetical protein TERM 10 3977 - 3967 - T 86 -6.8 -5.08824 | TTGGCACTTAAAAAA CCGA GAA TCGG CACTTAAAAAACCGA TERM 11 3999 - 3989 - T 86 -6.8 -5.08824 | TCGGCACTTAAAAAA CCGA GAA TCGG CACTTAAAAAACCGA TERM 12 4021 - 4011 - T 86 -6.8 -5.08824 | TCGGCACTTAAAAAA CCGA AAA TCGG CACTTAAAAAACCGA LIB004 7874 - 5055 - | Asn/Thr/Ser/Val rich protein TERM 13 5766 - 5782 + g 83 -6.6 -5.01811 | GTCATATCCTGCTGT TGCCAT TATCC ATGGCA TTTTTGCTTTGCTAC TERM 14 6360 - 6342 - G 73 -3.9 -5.10461 | gap 1 TGTATCCAATAAAAA GGGCA-TA TTTT TAGTGCCC CATTGTGTCATAGCA LIB005 9338 - 8334 - | hypothetical protein TERM 15 9025 - 9035 + g 70 -4 -4.92314 | TTTAAATGTATTGTA TCTT GAT AAGA TTTTTCTAAATTACT TERM 16 9551 - 9508 - H 91 -12.2 -3.10715 | opp_overlap 9507 9519 9522, overlap 9519 TTTAGTATTATTCAA TGTAATAAAAATAACTTGTA ATAT TACAAGCTATTTTTATTAAA AGTGTTGTTTATAAA TERM 17 9540 - 9519 - H 90 -6.7 -5.13741 | opp_overlap 9507 9519 9522, overlap 9508 TCAATGTAATAAAAA TAACTTGTA ATAT TACAAGCTA TTTTTATTAAAAGTG TERM 18 9519 - 9540 + H 72 -4.5 -5.07486 | opp_overlap 9519 9508, overlap 9507 9522 TCAATGTAATAAAAA TAACTTGTA ATAT TACAAGCTA TTTTTATTAAAAGTG TERM 19 9624 - 9605 - H 74 -8 -3.52117 | opp_overlap 9605, overlap 9604 CGTAGTTATAAAAAT TCTTTGTT ATAC AACAAAGA TTTCATATAGAATTT TERM 20 9605 - 9624 + H 79 -8 -3.85114 | opp_overlap 9605 9604 CGTAGTTATAAAAAT TCTTTGTT ATAC AACAAAGA TTTCATATAGAATTT TERM 21 9761 - 9743 - H 83 -10.4 -2.97667 | overlap 9740 TTATTTACTAAACTA GCTCTTTA AGT TAAAGAGC AAAGGGGATTATTTT TERM 22 9915 - 9929 + H 80 -4.4 -5.59534 | opp_overlap 9908, overlap 9898 AAAATATATAAATTT TTATTT AAG AAATAA TTTTTTGTTATCGTT TERM 23 12149 - 12165 + G 70 -3.8 -4.87803 | overlap 12145 GGAGGGGGACTTATC CAATTA GGATA TAATTG TTTTATTTCAAAATC LIB006 10436 - 12607 + | hypothetical protein asnB 14652 - 12772 - | putative asparagine synthetase LIB008 15459 - 14668 - | hypothetical protein LIB009 16469 - 15453 - | hypothetical protein LIB010 17606 - 16482 - | DegT/DnrJ/EryC1/StrS aminotransferase family protein TERM 24 16760 - 16749 - G 70 -4.4 -4.80656 | overlap 16744 AGTAATAATACAAAA GCTT TGCC AAGC ATGAGTGCTATGACT TERM 25 17353 - 17318 - G 87 -10.5 -3.8397 | ATATATCGACAATAA CAGCAGTTGCACCAA GTAACA TAGGTGCAAATGCTG TAGCAGGATAGGTAT pqqE 18526 - 17627 - | molybdenum cofactor biosynthesis protein LIB012 19238 - 18588 - | acetyltransferase LIB013 19368 - 20597 + | hypothetical protein LIB014 20757 - 21587 + | hypothetical protein LIB015 21675 - 22562 + | hypothetical protein LIB016 22569 - 23621 + | putative perosamine synthetase LIB017 23628 - 24695 + | hypothetical protein TERM 26 24912 - 24898 - f 83 -3.6 -5.92399 | overlap 24900 TAAGAAAAGAAAAAA TCTTCT TGC AAAAGA ATGCTACATTTTCTC TERM 27 25300 - 25288 - g 73 -4.1 -4.98522 | AAGCTTATACAAAAA TTCCA TAC CGGAA AATGGATTTTGATAT TERM 28 25601 - 25619 + G 77 -9 -3.52475 | opp_overlap 25600 TCTTTTTAACAAAGT TGTTTCTA ATA TAGAAACA TTATGCTGTATTAAA LIB018 24903 - 26174 + | putative molybdopterin cofactor synthesis protein A LIB019 26819 - 26181 - | hypothetical protein TERM 29 27164 - 27145 - R 80 -5 -5.44119 | TTTAGGTTAAAAAAA CAAAAACG ACAT CGTTGTTG ACATATATTAGTAAG TERM 30 27468 - 27410 - R 100 -19.7 -4.53636 | gap 1, opp_overlap 27411 27411 27418, overlap 27411 ATTATAGAACTAAAA GGTATAAATATATTAAGTGTGATAACTA CGTG TAATTATCACACTTAATATATTTATAC- CTTTACTTCATAGTT TERM 31 27411 - 27469 + r 100 -17.5 -3.98113 | gap 1, opp_overlap 27410 27411, overlap 27411 27418 TTATAGAACTAAAAG -GTATAAATATATTAAGTGTGATAACTA CGTG TAATTATCACACTTAATATATTTATACC TTTACTTCATAGTTA TERM 32 27468 - 27411 - R 100 -25.7 -3.31097 | opp_overlap 27411 27411 27418, overlap 27410 TTATAGAACTAAAAG GTATAAATATATTAAGTGTGATAACTA CGTG TAATTATCACACTTAATATATTTATAC CTTTACTTCATAGTT TERM 33 27411 - 27468 + r 100 -23.5 -2.98145 | opp_overlap 27410 27411, overlap 27411 27418 TTATAGAACTAAAAG GTATAAATATATTAAGTGTGATAACTA CGTG TAATTATCACACTTAATATATTTATAC CTTTACTTCATAGTT TERM 34 27418 - 27461 + r 100 -15.8 -4.03806 | opp_overlap 27410 27411, overlap 27411 27411 ACTAAAAGGTATAAA TATATTAAGTGTGATAACTA CGTG TAATTATCACACTTAATATA TTTATACCTTTACTT LIB020 28714 - 27548 - | hypothetical protein TERM 35 28714 - 28733 + H 70 -5.1 -4.58585 | opp_overlap 28712 28714 GCATCTTACGAAACA TATTTCC CCCTTT GGAAATA TTTATTATTTACGTG TERM 36 28794 - 28813 + H 100 -10 -4.82901 | opp_overlap 28792, overlap 28795 AATGATAAAAGACGC TTACCGGC ATAA GCCGGTAG TTTTTATAAAAAAAA TERM 37 28795 - 28812 + H 89 -11.3 -3.49419 | opp_overlap 28792, overlap 28794 ATGATAAAAGACGCT TACCGGC ATAA GCCGGTA GTTTTTATAAAAAAA TERM 38 30922 - 30904 - H 73 -6.8 -4.0371 | opp_overlap 30904 TACTTTTTACATAAA TGACTACT GAC AGTAATCA TTAGTGACATTTTCT LIB021 31301 - 31633 + | hypothetical protein TERM 39 32107 - 32117 + F 74 -2.6 -5.80817 | ATTTTTTTATTGGCT TATT TTT AATA TTTTTTTCTGTTGGA TERM 40 33422 - 33450 + F 90 -6.1 -5.4588 | opp_overlap 33430, overlap 33423 33426 33430 CCAAACAAGTGTTAA TTACTTAACTAGC TAA GCTAGTTAGATAG TTTTTTGTGCTTTTG TERM 41 33423 - 33449 + F 74 -7.4 -3.85088 | opp_overlap 33430, overlap 33422 33426 33430 CAAACAAGTGTTAAT TACTTAACTAGC TAA GCTAGTTAGATA GTTTTTTGTGCTTTT TERM 42 33426 - 33446 + F 72 -9.1 -2.6676 | opp_overlap 33430, overlap 33423 33422 33430 ACAAGTGTTAATTAC TTAACTAGC TAA GCTAGTTAG ATAGTTTTTTGTGCT TERM 43 33515 - 33539 + F 81 -7.3 -4.60487 | overlap 33516 AATAATATATATCCT TTTCTTCTTTT TTA GAAAGAAGAAG TTTTTAACGATAGTA TERM 44 33516 - 33538 + F 75 -8.6 -3.3581 | overlap 33515 ATAATATATATCCTT TTCTTCTTTT TTA GAAAGAAGAA GTTTTTAACGATAGT TERM 45 33951 - 33940 - g 77 -3 -5.48303 | AGAATTCGAAAAAAA TTTG AAAG CAAA AAGAGCCGAAGAACA TERM 46 34560 - 34549 - g 82 -4.4 -5.56573 | AGAAATAAAGAAAAA GCTT CAAA AAGC ATTGAAAGAAGGAAA TERM 47 34638 - 34628 - g 91 -2.6 -6.02919 | TTAGAAAGAAAAAAA TTTT TAA AAAA CAGACAATTAATACG TERM 48 36275 - 36289 + G 70 -4.3 -4.74858 | ATAGAAGCAATTCCA CTTAG TTCAC CTAAG TCTTTTTTTTATTTA LIB022 33665 - 36469 + | hypothetical protein TERM 49 37211 - 37198 - g 87 -2.4 -5.96219 | TACTCAGAAAAAAAA TCCT TAAAAC AGGA TATAAGTAGAGTAAA TERM 50 37480 - 37466 - g 76 -3.6 -5.32944 | opp_overlap 37472, overlap 37468 37472 TTGATAATCAAAAAA CAGAAA TTC TTTCTA AGAATCAATTAAAAA TERM 51 37484 - 37472 - g 72 -4.9 -4.66347 | opp_overlap 37472, overlap 37468 37466 ATCAAAAAACAGAAA TTCTT TCT AAGAA TCAATTAAAAAATCT LIB023 36874 - 38025 + | integrase TERM 52 38052 - 38030 - f 70 -7.2 -3.55814 | opp_overlap 38036, overlap 38032 CATTAAGTTAGACAA CATACATTTA TTA TAAATGTATA AAATCTATAATTTTT TERM 53 38327 - 38341 + F 77 -5.8 -4.77698 | ATATATAATATCCAT TTAAGT GAT ACTTAA TTTATTTTAGTGTTA TERM 54 38911 - 38898 - g 89 -3.1 -5.80248 | CAAGATACAAAAAAA GGTAC TGTA ATACC AGCAAGTCCAACATT parA 38667 - 39422 + | ATPases involved in chromosome partitioning SEQUENCE gi|94972398|ref|NC_008014.1| Lawsonia intracellularis PHE/MN1-00 plasmid 3, complete sequence (length 194553) LIC001 525 - 1610 + | integrase/recombinase TERM 1 1929 - 1949 + F 73 -8.4 -3.1355 | opp_overlap 1923 1924 1941 1943 ATTTTAAAATTTGAA TGGTGTAT AAAAC ATACACCA TTAGATGTAAGTAAC TERM 2 2105 - 2119 + F 82 -4.4 -5.78622 | AAAAAATTTACAATT TTTATA CCA TATAAA TTTTTTTTACAATGA TERM 3 2912 - 2892 - g 86 -2.5 -5.83822 | CAGAGGTAAAAAAAA GCTGTCTTG AGG CCAAACAAC ATAACTTTGGTGTTT LIC002 2657 - 3580 + | hypothetical protein TERM 4 3951 - 3912 - g 79 -5.3 -5.04175 | TGAACGATATAAAAA TCTATTAGGAATAAA TGGCATTTGT TTTATTCCTCATAGA AAGTTTTCAGTAAAA epsG 3754 - 4872 + | putative alpha(1,3)rhamnosyltransferase EpsG rfbC 5115 - 5657 + | dTDP-6-deoxy-D-glucose-3,5-epimerase LIC005 5841 - 6644 + | ABC transporter TERM 5 7611 - 7623 + G 80 -6.3 -4.65446 | CATATCAGATCCATA GGTAT ATA ATACC TTTTCTATATATGGT LIC006 6833 - 7720 + | glycosyltransferase TERM 6 7883 - 7863 - g 85 -4.2 -5.60993 | opp_overlap 7855 CGTCTTATAAAAAAA TTTTTTAT TATAT ATAAAAAA TATGGGTTCCAAGCA TERM 7 9636 - 9605 - g 77 -3 -5.44721 | ACTATCTCAAAAAAA GAAGAAACAATTAC GTGA GTCATTGAATCTTC CACAAAATGGTTGTC TERM 8 9786 - 9774 - g 71 -6.3 -4.25256 | TGGGTAGGAAAACAA GAAGT ACC ACTTC TCCACTCTTCTCCTT TERM 9 10141 - 10125 - g 83 -2.3 -5.7946 | overlap 10129 CCTGGAAGAAAAAAA GTATTAT TGC ATTATAC AACAGAAGTTGCAGT LIC007 7836 - 10205 + | hypothetical protein LIC008 10465 - 11196 + | methyltransferase 24 LIC009 14562 - 11293 - | hypothetical protein TERM 10 13159 - 13135 - G 76 -10.1 -2.90804 | opp_overlap 13134 13134 13137, overlap 13134 13137 AGAAGCTATAATAAG TACAATCCATG TTC CAAGGATTGTA GCTTTACCTATTGAG LIC010 15277 - 14573 - | putative nucleotidyl transferase mvaK1 16257 - 15277 - | putative galactokinase/mevalonate kinase TERM 11 16402 - 16392 - R 70 -4 -5.1104 | overlap 16394 AAAGAGATATAAAAA TGTA ATA TACA ATCATTATTACTATA TERM 12 16501 - 16454 - R 91 -8.9 -4.70739 | opp_overlap 16462 16467, overlap 16459 16462 TAAAAAGAATGAAAA TGTAATAATATAACAAATAGT TATTAT ACTATTTGTTATATTATAATA GTAGAAATGGTAAAT TERM 13 16496 - 16459 - R 100 -13.2 -3.4231 | opp_overlap 16462 16467, overlap 16454 16462 AGAATGAAAATGTAA TAATATAACAAATAGT TATTAT ACTATTTGTTATATTA TAATAGTAGAAATGG TERM 14 16493 - 16462 - R 89 -10.5 -3.82481 | opp_overlap 16462 16467, overlap 16459 16454 ATGAAAATGTAATAA TATAACAAATAGT TATTAT ACTATTTGTTATA TTATAATAGTAGAAA TERM 15 16462 - 16493 + r 86 -10.5 -3.44051 | opp_overlap 16459 16454 16462, overlap 16467 ATGAAAATGTAATAA TATAACAAATAGT TATTAT ACTATTTGTTATA TTATAATAGTAGAAA LIC012 17556 - 16567 - | putative LmbZ LIC013 18434 - 17553 - | dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) TERM 16 17738 - 17755 + g 72 -2.7 -5.24515 | opp_overlap 17730 TACAAAGTTCTGTAG CAAAATC AAAT GATGTTG TTTTATTTGTTTCTT ugd 19872 - 18568 - | UDP-glucose 6-dehydrogenase TERM 17 18597 - 18610 + g 71 -5.3 -4.59773 | CTATGGCAACATAGC GGATA GATG TATCC TTTTTAAGAATGGGG TERM 18 19029 - 19047 + g 91 -2.5 -5.98675 | gap 1, opp_overlap 19031, overlap 19031 GGACACCAGTAAGTA C-AGAAGA AACC TCTTCTTG TTTTTTATTTTTATA TERM 19 19031 - 19044 + g 77 -5.3 -4.97159 | opp_overlap 19031, overlap 19029 ACACCAGTAAGTACA GAAGA AACC TCTTC TTGTTTTTTATTTTT LIC015 20956 - 19973 - | hypothetical protein tal 21653 - 20934 - | putative translaldolase hisJ 22343 - 21738 - | histidinol phosphatase and related phosphatases TERM 20 22059 - 22048 - G 71 -3 -5.16841 | GTATATGAATAAAAA CTTT CCAT AAAG GTAATCCCATGTTCT LIC018 22924 - 22325 - | sugar isomerase family protein LIC019 26398 - 23114 - | hypothetical protein TERM 21 23602 - 23620 + g 74 -2.4 -5.57054 | opp_overlap 23602 23606, overlap 23606 TATAGTCTGGAAATA TAAGCTGA ATA TCAGTTAA TTTTTTTACATTATT LIC020 28187 - 26718 - | hypothetical protein TERM 22 27240 - 27250 + gr 73 -4 -5.10461 | TATTGCTTTTGCTCC TTCT GGA AGAA TTTTTGTTAGCTGCA TERM 23 28015 - 28033 + gr 71 -4.6 -4.81083 | TGAAGATTTTTAGTT TTCCAATT TAC AAGTGGAA TTTTTAATGCTTCCG LIC021 28957 - 28160 - | hypothetical protein LIC022 29798 - 29190 - | hypothetical protein galE 31122 - 30157 - | nucleoside-diphosphate-sugar epimerases TERM 24 30200 - 30212 + g 80 -6.3 -4.7339 | opp_overlap 30199 GTGTTTTCCATAAGC CAACT GAC AGTTG TTTTTACACTTTCTT LIC024 31902 - 31168 - | cell wall biosynthesis glycosyltransferase TERM 25 32357 - 32310 - R 73 -9 -2.88231 | gap 2, opp_overlap 32299 32314, overlap 32299 32305 AGTAGAATGAGTACA TTCAT-GTGTA-TTTGGTAATA GATGAT TATTACCAAAATACACTATGAA TTCCCCAGATGAAAT LIC025 32919 - 32380 - | hypothetical protein LIC026 33764 - 32919 - | hypothetical protein TERM 26 33799 - 33821 + H 83 -10.6 -2.98786 | overlap 33801 TGAATAAGTGATAGT GAGGGGAG AATTACA CTCCCCTC TATGATTATCCTGTC TERM 27 35081 - 35057 - g 76 -4.3 -5.16237 | overlap 35061 35062 AATCTTATTAAAAAA GAACCTCAAAC CTG GTTTGAACCTC AGCTTATTATTAATA TERM 28 35816 - 35795 - g 81 -5.9 -4.97158 | CCAGATGAAATAAAA CAGATGCAA AAAT TTGTATCTG ATAGCATTTAATTTA LIC027 34205 - 35827 + | hypothetical protein LIC028 36171 - 37394 + | hypothetical protein LIC029 37950 - 39563 + | hypothetical protein TERM 29 39642 - 39679 + F 75 -4.3 -5.1356 | gap 1, opp_overlap 39650, overlap 39643 39645 TATTATATCTTCATC TGCAT-ACACCAAAACAT ACC ATGCTTTGGTGTAATACG TTTTTATTAATAGCA TERM 30 39645 - 39675 + F 71 -8.4 -2.93316 | opp_overlap 39650, overlap 39643 39642 TATATCTTCATCTGC ATACACCAAAACAT ACC ATGCTTTGGTGTAA TACGTTTTTATTAAT TERM 31 39670 - 39650 - f 73 -9.1 -2.88544 | opp_overlap 39645 39643 39642 CTTCATCTGCATACA CCAAAACAT ACC ATGCTTTGG TGTAATACGTTTTTA TERM 32 39831 - 39845 + G 83 -7.2 -4.81082 | TTGGACTATCTACCG GGTTAA TTC TTAACC TTTTGTTACTTGGTT LIC030 39662 - 41038 + | D-alanine export protein TERM 33 41104 - 41051 - f 84 -9.9 -3.60948 | gap 1 TAATATAGGTTGAAA CCTCTGATTGTTAATGACTGTCAT TGGAAGG AGGACTA-CATTAACAATCAGAGG CACATCCTTATTTAT LIC031 41380 - 41661 + | hypothetical protein LIC032 42834 - 41854 - | hypothetical protein TERM 34 42672 - 42687 + g 73 -7.6 -3.78922 | AATCCATACGGTCAG GCCATT GAAG AATGGC TTTAAATACTTTTTT LIC033 43714 - 42884 - | hypothetical protein TERM 35 43683 - 43696 + g 77 -5.3 -4.86033 | opp_overlap 43686 GCAAGTGAGCCTATA GCATT AGAA AATGC TTTTTCTGAAAGTTT LIC034 44217 - 43711 - | hypothetical protein TERM 36 43952 - 43970 + g 93 -7.5 -5.69473 | GAAATATCCATATCT TCTTGGA TCTCT TCCAAGA TTTTTTTATGCTGTA TERM 37 44397 - 44368 - R 78 -10.1 -2.71791 | opp_overlap 44367 44366 44370, overlap 44367 ATTCGTTCTTTAAAT TCTTCCTTAGGAA TATA CTCCTTAGGAAGA CGTTCTCGTATATCA LIC035 45232 - 44528 - | hypothetical protein TERM 38 45147 - 45157 + g 71 -5.4 -4.46976 | opp_overlap 45147 TCAGATTCCAACTTA GCAA CAA TTGC TTTATATTTATTAGT slt 45860 - 45243 - | putative lytic murein transglycosylase precursor TERM 39 46704 - 46745 + H 85 -5.5 -5.32565 | opp_overlap 46702 46704 46744, overlap 46706 46744 AATTAAAAATAGATA TTTTGTTAAAATTAAAAAG AATA TTTTTTATTTTTAACAATA TTTTTTAATTAGTTA TERM 40 46706 - 46743 + H 82 -8.1 -4.27681 | opp_overlap 46704 46702, overlap 46704 TTAAAAATAGATATT TTGTTAAAATTAAAAAG AATA TTTTTTATTTTTAACAA TATTTTTTAATTAGT TERM 41 46819 - 46806 - g 86 -2.5 -5.83211 | opp_overlap 46806 TATGAAAATAAAAAA TAAAA TTAT TTTTA TTTCTATAGTTATTA TERM 42 46938 - 46953 + G 82 -3.4 -5.67063 | opp_overlap 46938 TACTAAGTTATATTA TTTTTT AGAT AAAAAA TTTTTTTATGATGCA TERM 43 47219 - 47202 - g 93 -4.9 -6.11243 | overlap 47203 AGGCAACAAAAAAAA CGATTCT GAAG AGAATCA TCCTACAGTAGAACA TERM 44 47540 - 47524 - g 70 -2.1 -5.26316 | GGAGGTGATAAAAAA CCATCTG GAA CTGAAGG AAACAATAGTTCCTC TERM 45 51263 - 51253 - g 80 -6.8 -4.7878 | TACTCAGAAAATAAA GGGA AAT TCCC AGCTAACATAAGTAG LIC037 46792 - 51615 + | signal peptide TERM 46 52014 - 51985 - f 70 -6.5 -4.08919 | overlap 51986 AAACGGTAAAGTAAA CTTCTAATGTCGG TTAA CTGACATTAGAAC ACCATGAAGAAACTC TERM 47 52013 - 51986 - f 79 -10 -3.04267 | overlap 51985 AACGGTAAAGTAAAC TTCTAATGTCGG TTAA CTGACATTAGAA CACCATGAAGAAACT LIC038 52068 - 53210 + | glycosyltransferase TERM 48 53335 - 53281 - T 100 -16.2 -3.01791 | opp_overlap 53285, overlap 53285 ACCCCTCCGTCAATA GTAATCATAGTTCTAGGAAACAAAAT ATT ATTTGATATCCTAAAACTATGATTAC TTAAACTTATTTGAC TERM 49 53331 - 53285 - T 87 -11.2 -3.36273 | opp_overlap 53285, overlap 53281 CTCCGTCAATAGTAA TCATAGTTCTAGGAAACAAAAT ATT ATTTGATATCCTAAAACTATGA TTACTTAAACTTATT LIC039 55578 - 53512 - | hypothetical protein TERM 50 54651 - 54632 - G 72 -9.2 -2.65766 | opp_overlap 54647, overlap 54622 CTAAATCCTATAGCA CCACCTCC AGGT GGTGGTGG GCTTCCAGGAGGCCT TERM 51 54647 - 54669 + g 85 -12 -3.14564 | opp_overlap 54632 54622 CCACCTCCAGGTGGT GGTGGGCTTC CAG GAGGCCTACC TTGCTCCACAGATGA TERM 52 55749 - 55715 - R 100 -15.4 -4.7173 | opp_overlap 55715 CATTATATGTAAAAA TAGTTACTTTATGAAT AAT ATCCATAAAGTAACTA TTTTTTATTGACACT TERM 53 55715 - 55749 + r 100 -13.2 -5.45652 | opp_overlap 55715 CATTATATGTAAAAA TAGTTACTTTATGAAT AAT ATCCATAAAGTAACTA TTTTTTATTGACACT TERM 54 55884 - 55897 + r 81 -2.5 -6.04419 | TTAAAAAATTATCTA TTTAT AATA ATAAA TTTTTTTCTTATTTT LIC040 57749 - 55962 - | hypothetical protein TERM 55 58158 - 58200 + r 70 -5.2 -4.63486 | TAATCTTTAGCCTTA TTAGTGAAAATAATATAACA AAG TTTTATATTGTGTTCATTAA TTTTATTAAAAACAT TERM 56 60225 - 60198 - R 100 -14.4 -5.86965 | opp_overlap 60198 60202 AGTTATTAAAAAAAA GAAAGTATCTCT TATA AGAGATACTTTC TTTTTACTATATCTA TERM 57 60198 - 60225 + r 100 -14.4 -4.86133 | opp_overlap 60198, overlap 60202 AGTTATTAAAAAAAA GAAAGTATCTCT TATA AGAGATACTTTC TTTTTACTATATCTA TERM 58 60202 - 60221 + r 100 -9.4 -4.94262 | opp_overlap 60198, overlap 60198 ATTAAAAAAAAGAAA GTATCTCT TATA AGAGATAC TTTCTTTTTACTATA LIC041 62806 - 60308 - | hypothetical protein TERM 59 61287 - 61303 + g 70 -8.1 -3.30106 | opp_overlap 61287, overlap 61285 61283 TCAGCCTGATATAAA CTTGTTT TTA AAACAAG TGTCTTTAAATTAGC TERM 60 61303 - 61287 - G 79 -8.1 -4.04206 | opp_overlap 61287 61285 61283 TCAGCCTGATATAAA CTTGTTT TTA AAACAAG TGTCTTTAAATTAGC TERM 61 62352 - 62342 - G 86 -5.4 -5.63517 | TTCCGAAAGAAAAAA CATC TCT GATG TACCTAATGCTGCAC TERM 62 62563 - 62589 + g 74 -6.6 -4.35091 | opp_overlap 62580, overlap 62564 62573 62574 CACTACCAGGATTTC CTTCCTCTTCCT CAG AAGAAGAGGAAC TTTCTTCTGACTGTT TERM 63 62564 - 62588 + g 79 -10.1 -3.1997 | opp_overlap 62580, overlap 62563 62573 62574 ACTACCAGGATTTCC TTCCTCTTCCT CAG AAGAAGAGGAA CTTTCTTCTGACTGT TERM 64 62914 - 62939 + r 71 -4.9 -4.82518 | opp_overlap 62914 62937, overlap 62937 TATAAACAAGAATAC TTCTATCTTAT TACT ATAATATAGAA TTTTATTCGTCTTTT LIC042 65108 - 63033 - | hypothetical protein TERM 65 63771 - 63737 - G 71 -7.4 -3.53745 | opp_overlap 63735 63739, overlap 63739 CATACCCTAAACCAA GAGTTATGTTTGAAAT TGT ATTTGAAACATAACTT CTCTTTCTAGTTTGT TERM 66 63769 - 63739 - G 81 -10 -3.33865 | opp_overlap 63735 63739, overlap 63737 TACCCTAAACCAAGA GTTATGTTTGAAAT TGT ATTTGAAACATAAC TTCTCTTTCTAGTTT TERM 67 63739 - 63769 + g 87 -10 -3.94393 | opp_overlap 63739 63737, overlap 63735 TACCCTAAACCAAGA GTTATGTTTGAAAT TGT ATTTGAAACATAAC TTCTCTTTCTAGTTT LIC043 67194 - 65206 - | hypothetical protein TERM 68 67251 - 67270 + r 85 -5.2 -5.4148 | opp_overlap 67242 TACATATATATAACG TTATATAA CATT TTATATAA TTTTTTCATTATTTA LIC044 68417 - 67446 - | hypothetical protein LIC045 69295 - 68531 - | hypothetical protein TERM 69 69396 - 69412 + r 85 -5.3 -5.4251 | AATAAACTATATGTA TATTTTT TTC AAAAATA TTTTTTATATGTAAA TERM 70 70335 - 70355 + r 72 -3.4 -5.40072 | opp_overlap 70328, overlap 70318 AGACATAACTTGTTT TATCTTTT ATAAC AAGAGATA TTTTTTTAACAACAG LIC046 72761 - 70371 - | hypothetical protein TERM 71 72821 - 72858 + r 77 -9.5 -3.02074 | opp_overlap 72812 72817 72832, overlap 72832 AAAATATAATAGTTA TTAGCAAAAACTATTAA CAAG TTAATATTTTTTGCTAG TGTATAATATATTTA TERM 72 73184 - 73173 - R 80 -4.4 -5.5353 | CAGAGGAATAAAAAA CTGA ATAT TCAG CAAGTATTAAACAGT LIC047 75901 - 73376 - | hypothetical protein TERM 73 74115 - 74131 + g 73 -9.5 -2.78712 | overlap 74113 GTATATCCGTTATGA GGAGTAA ACA TTACTCC TGCTTGGCTTGAACG TERM 74 75666 - 75718 + g 79 -10 -3.25088 | opp_overlap 75666 75663, overlap 75673 75677 CCCATATCAATACCA GTAGCACCTTGCTCTTCTTCTTCA CCTTC TGAAGATGAAGAGTCAGTTTCTAC TTGATCCCTTTGAGG TERM 75 75673 - 75711 + g 87 -9.7 -4.08144 | opp_overlap 75666 75663, overlap 75666 75677 CAATACCAGTAGCAC CTTGCTCTTCTTCTTCA CCTTC TGAAGATGAAGAGTCAG TTTCTACTTGATCCC TERM 76 75677 - 75707 + g 83 -11.3 -2.7361 | opp_overlap 75666 75663, overlap 75673 75666 ACCAGTAGCACCTTG CTCTTCTTCTTCA CCTTC TGAAGATGAAGAG TCAGTTTCTACTTGA TERM 77 77631 - 77676 + r 75 -9.4 -2.7558 | opp_overlap 77629 77631, overlap 77630 CAAGTAAAACAATTA GGTAGCTTATTATAGTG-AACA GATA TGTTACCCT-TAATAAGCTACC CTCTTTATACTGTCA TERM 78 77676 - 77631 - R 81 -9.9 -3.14372 | opp_overlap 77631 77630, overlap 77629 CAAGTAAAACAATTA GGTAGCTTATTATAGTGAACA GATA TGTTACCCTTAATAAGCTACC CTCTTTATACTGTCA LIC048 79972 - 77795 - | hypothetical protein LIC049 80688 - 79999 - | hypothetical protein TERM 79 80700 - 80724 + r 93 -7.3 -5.26158 | opp_overlap 80705 80710 80712, overlap 80702 ACATTATTTAAACTC CACAATAGTAT ACA ATACTATTGTA TTTATTTTTTATTTA TERM 80 80702 - 80722 + r 90 -9.9 -4.1934 | opp_overlap 80705 80710 80712, overlap 80700 ATTATTTAAACTCCA CAATAGTAT ACA ATACTATTG TATTTATTTTTTATT TERM 81 80771 - 80750 - R 86 -8.9 -4.45945 | opp_overlap 80750 80760 ATTTATTAAGTAAAA TTACATAGT TGTT ACTATGTAA CTTATAGTAATTACA TERM 82 80750 - 80771 + r 72 -8.9 -2.68015 | opp_overlap 80750, overlap 80760 ATTTATTAAGTAAAA TTACATAGT TGTT ACTATGTAA CTTATAGTAATTACA TERM 83 81040 - 81012 - R 100 -10.7 -4.91573 | opp_overlap 81003 81006 81007 81012, overlap 81003 AAAATATATTAAAAA TATTTTATTTATT GTA AATAAATAAAATA TTGTCTTATTATTAG TERM 84 81012 - 81040 + r 93 -10.7 -3.90645 | opp_overlap 81003 81012, overlap 81003 81006 81007 AAAATATATTAAAAA TATTTTATTTATT GTA AATAAATAAAATA TTGTCTTATTATTAG TERM 85 81092 - 81066 - R 100 -6.9 -5.56263 | opp_overlap 81066 81069 ATTAGAAAATAAAAA TTATAATAAAA TTAAT TTTTATTATAA TACATTTATAAAATT LIC050 83723 - 81658 - | hypothetical protein TERM 86 82062 - 82052 - G 76 -2.6 -5.5208 | TTACAACAGAAAAAA TATT CTC AATA TAAGGTGTTAAAAAC LIC051 86378 - 84342 - | hypothetical protein TERM 87 85627 - 85638 + g 89 -3 -5.89921 | CTTTGTTGAGCTGTA TGAA TACG TTCA TTTTTTTCTTCTACT LIC052 88623 - 86569 - | hypothetical protein TERM 88 86648 - 86638 - G 79 -5.4 -5.18371 | TTTTACAAAAGAAAA CAAC ATT GTTG CTCCCGTAAAAAGAC TERM 89 87410 - 87430 + g 85 -4.1 -5.61689 | overlap 87386 87426 TAGTAAGGAATGTGT TTTTGCT TCTGGTT AGCAAAA TTTTTTGTTGCTTTT TERM 90 88946 - 88961 + r 71 -4.8 -4.80453 | opp_overlap 88946 TATAGTTAAAGTATA CTATTA AATA TAATAG TTTGTTTTGTAATAG LIC053 91199 - 89091 - | hypothetical protein LIC054 93478 - 91646 - | hypothetical protein TERM 91 93024 - 93035 + g 76 -4.4 -5.0666 | TCTCTATCTCTATTA GGAT CTTC ATCC TTTCTTTTTTCAATA TERM 92 93611 - 93568 - R 100 -12.1 -5.17488 | opp_overlap 93568 93567, overlap 93558 93570 AAGACTAAAATAAAA TCTTATGGAACAAGATAGT TATTTT ACTATGTTGTTCCATAAAA ATTATAAATAATAAA TERM 93 93568 - 93611 + r 78 -9.9 -2.62463 | opp_overlap 93558 93568 93570, overlap 93567 AAGACTAAAATAAAA TCTTATGGAACAAGATAGT TATTTT ACTATGTTGTTCCATAAAA ATTATAAATAATAAA TERM 94 93609 - 93570 - R 95 -12.5 -2.79205 | opp_overlap 93568 93567, overlap 93558 93568 GACTAAAATAAAATC TTATGGAACAAGATAGT TATTTT ACTATGTTGTTCCATAA AAATTATAAATAATA LIC055 95874 - 94015 - | hypothetical protein TERM 95 96114 - 96077 - R 70 -6.3 -4.05033 | opp_overlap 96077, overlap 96081 GTTATCCCATACAAA TGAATTCAGGCTCTGAC TATA GTCAAAGCCTGAAAAGA TTATCCCATCAAAAT TERM 96 96110 - 96081 - R 100 -15.9 -3.65294 | opp_overlap 96077, overlap 96077 TCCCATACAAATGAA TTCAGGCTCTGAC TATA GTCAAAGCCTGAA AAGATTATCCCATCA LIC056 97960 - 96167 - | hypothetical protein TERM 97 97813 - 97784 - G 93 -3.7 -6.13503 | gap 1, opp_overlap 97784 TACTAATAAAAAAAA CGGAAGAATTGTTA CTG CAACACTT-TTCCG TAATATATTTTTTAT TERM 98 98161 - 98133 - R 85 -8.4 -4.22949 | opp_overlap 98108 98133 TAGAATATACATAAA TATTGTTTACAC ATTTA ATGTAAACAATA TTTTTTCATTATGTG TERM 99 98133 - 98161 + r 95 -7.7 -5.35354 | opp_overlap 98133, overlap 98108 TAGAATATACATAAA TATTGTTTACA CATTTAA TGTAAACAATA TTTTTTCATTATGTG TERM 100 98458 - 98485 + r 71 -8.7 -2.98479 | opp_overlap 98458 TTTATATATAAAAAA CTACATTAATA ATTTAA TATTAATGTAG TCTAGTATTTAATAA TERM 101 98485 - 98458 - R 100 -8.7 -5.4251 | opp_overlap 98458 TTTATATATAAAAAA CTACATTAATA ATTTAA TATTAATGTAG TCTAGTATTTAATAA TERM 102 98568 - 98534 - R 100 -11.6 -5.88565 | opp_overlap 98539 TCTACAATAAAAAAA TAGAACGGCCTAACTA TTA CAATTAGGCCGTTTTA GTCCACCTCTTCAGT TERM 103 98539 - 98563 + r 85 -8.6 -4.26344 | opp_overlap 98534 AATAAAAAAATAGAA CGGCCTAACT ATTAC AATTAGGCCG TTTTAGTCCACCTCT TERM 104 98648 - 98660 + r 74 -4.9 -5.03994 | AATATTTATATTGCA TTTGA ACA TCAAA TTTTTGTCTCTCAAG LIC057 101632 - 99530 - | hypothetical protein TERM 105 100362 - 100352 - G 76 -4 -5.21709 | TTCTACAGTAAAAAA TGTA CGA TACA AAGGAAAATGTACTT TERM 106 101819 - 101775 - R 75 -9.2 -3.16187 | gap 1, opp_overlap 101756 101769 101775 101774 101788 101790 101816 101818, overlap 101769 101771 101812 101814 101816 101818 TATAAAAACTATATA TATATATATTACATACAATAT ATTA ATATTGTATAT-ATATATATA GTTATTAATTATTAA TERM 107 101860 - 101812 - R 100 -13.8 -2.91735 | opp_overlap 101775 101774 101816 101818 101820, overlap 101775 101771 101814 101816 101818 101820 101828 TTAATATTGTATATA TATATATAGTTATTAATTATTA ACTAA TAGTAATTAATAACTATATATA ATAAAATAAGAGGAT TERM 108 101858 - 101814 - R 91 -12 -3.00766 | opp_overlap 101775 101774 101816 101818 101820, overlap 101775 101771 101812 101816 101818 101820 101828 AATATTGTATATATA TATATAGTTATTAATTATTA ACTAA TAGTAATTAATAACTATATA TAATAAAATAAGAGG TERM 109 101816 - 101856 + r 88 -12.4 -2.79796 | opp_overlap 101775 101771 101814 101812 101816 101818 101820 101828, overlap 101775 101774 101818 101820 TATTGTATATATATA TATAGTTATTAATTATTA ACTAA TAGTAATTAATAACTATA TATAATAAAATAAGA TERM 110 101856 - 101816 - R 79 -10.2 -3.05498 | opp_overlap 101775 101774 101816 101818 101820, overlap 101775 101771 101814 101812 101818 101820 101828 TATTGTATATATATA TATAGTTATTAATTATTA ACTAA TAGTAATTAATAACTATA TATAATAAAATAAGA TERM 111 101854 - 101818 - R 71 -8.4 -3.08197 | opp_overlap 101775 101774 101816 101818 101820, overlap 101775 101771 101816 101814 101812 101820 101828 TTGTATATATATATA TAGTTATTAATTATTA ACTAA TAGTAATTAATAACTA TATATAATAAAATAA TERM 112 101818 - 101854 + r 83 -10.6 -2.94747 | opp_overlap 101775 101771 101818 101816 101814 101812 101820 101828, overlap 101775 101774 101816 101820 TTGTATATATATATA TAGTTATTAATTATTA ACTAA TAGTAATTAATAACTA TATATAATAAAATAA TERM 113 101820 - 101852 + r 74 -8.8 -3.02649 | opp_overlap 101771 101820 101818 101816 101814 101812 101828, overlap 101818 101816 GTATATATATATATA GTTATTAATTATTA ACTAA TAGTAATTAATAAC TATATATAATAAAAT TERM 114 101896 - 101867 - R 100 -13.9 -4.87592 | opp_overlap 101870 101891 CTATATATAATAAAA TAAGAGGATAATA CTAG TATTATCCTCTTA TAACAGAGTGTATTA TERM 115 101870 - 101893 + r 87 -11.2 -3.29829 | opp_overlap 101867, overlap 101891 TATATAATAAAATAA GAGGATAATA CTAG TATTATCCTC TTATAACAGAGTGTA LIC058 105190 - 102038 - | hypothetical protein TERM 116 103627 - 103611 - G 85 -6.6 -5.22006 | TGAGTATAAGAAAAA GAGGAA TTATC TTCCTC ACCAGAATCGCTACT TERM 117 105540 - 105522 - R 77 -9 -3.39482 | TAAGAGGATGTAGAA TACCTTAT AGA ATAAGGTA AAAGATAAGATGTAA LIC059 107375 - 105648 - | hypothetical protein TERM 118 106067 - 106049 - G 77 -9 -3.68351 | overlap 106063 106065 TTTGTACCATTGAAA CCATATAT TCA ATATATGG CGTCATAGATACACC TERM 119 106509 - 106485 - G 72 -8.1 -3.48395 | ATTGGCTTGATACAA TTTTAATGCTT GAA AAACATTAAAA TGTCGCATGCTACTT TERM 120 107525 - 107511 - R 80 -4.4 -5.60689 | opp_overlap 107511 TCATACAATAAAAAA TAAATA TAT TATTTA TTATAAGATCCTAAT TERM 121 107926 - 107880 - R 100 -17.9 -4.34263 | gap 1, opp_overlap 107884 TCTTAATAATATAAA GCAACTATCTATCTTTTATATA AAAT TA-ATAAAAGATAGATAGTTGC TACAATATATACATA TERM 122 107884 - 107922 + r 90 -11.5 -3.18239 | gap 1, opp_overlap 107880 AATAATATAAAGCAA CTATCTATCTTTTATATA AAAT TA-ATAAAAGATAGATAG TTGCTACAATATATA LIC060 109867 - 108008 - | hypothetical protein TERM 123 110052 - 110110 + r 100 -15.2 -4.04174 | opp_overlap 110070 110103, overlap 110040 110070 110103 AAATAAAGTATTATT TTATATAATTAAAAAAAATGCAATACAA ATT TTGTACTGCATTTTTTATAATTATAAAA TTTAATTGTATAAAG TERM 124 110070 - 110092 + r 100 -7.8 -5.39755 | opp_overlap 110070, overlap 110052 TATAATTAAAAAAAA TGCAATACAA ATT TTGTACTGCA TTTTTTATAATTATA TERM 125 110092 - 110070 - R 100 -10 -5.98781 | opp_overlap 110070 110052 TATAATTAAAAAAAA TGCAATACAA ATT TTGTACTGCA TTTTTTATAATTATA TERM 126 110187 - 110201 + r 74 -2.9 -5.68039 | opp_overlap 110182 110187, overlap 110182 TATAATAAAATTATA TACTT ATATA AAGTA TTTTTTTCTACATTT LIC061 111209 - 110667 - | hypothetical protein TERM 127 112352 - 112326 - R 70 -5.3 -4.62712 | AAAAAACAGAACAAA CTATTTCCT TTAGTCATT AGGAAATAG AAGGATTAAATACTG TERM 128 112547 - 112569 + r 76 -6.4 -4.57073 | TTAGTCATCTATTGA CAGTTAGTTA TTA TAACTAGTTG TTTTTAAGAGCAATA TERM 129 112729 - 112717 - R 93 -7.7 -5.24989 | opp_overlap 112717 TTACATATCAAAAAA TCGTC ATA GACGA TTAATATCTAACTAG LIC062 114228 - 112870 - | hypothetical protein TERM 130 114192 - 114204 + g 93 -7.7 -5.45726 | overlap 114174 TCTTTTGTAATGCTA GAGGA GAT TCCTC TTTTTTTGCCATCTC TERM 131 114465 - 114450 - H 70 -6.2 -4.08164 | opp_overlap 114450 114462, overlap 114461 AAAAGTTTACATAAA GAAAGA TATA TCTTTC TACTATATAGAAAAT parA 114721 - 115545 + | ATPases involved in chromosome partitioning LIC064 115557 - 117053 + | hypothetical protein TERM 132 117484 - 117515 + T 100 -17.5 -3.4072 | opp_overlap 117484 TATATAGTCCATAAA CATATACCAGGGC AAGTAA GCCCTGGTATATG TTGTGATAACAAATA TERM 133 117515 - 117484 - T 100 -17.5 -3.91858 | opp_overlap 117484 TATATAGTCCATAAA CATATACCAGGGC AAGTAA GCCCTGGTATATG TTGTGATAACAAATA LIC065 120978 - 117559 - | hypothetical protein TERM 134 119135 - 119117 - G 77 -8.8 -3.56958 | overlap 119109 GTAAGAAGAGCACAA GCTGCACC TGT GGCACAGC CAGTAGCACCACTTG TERM 135 120528 - 120545 + g 81 -9.9 -3.45054 | opp_overlap 120523 GAGGACAACATTCTT GAGGACT AGAA AGTCCTC TTGTAACTTCTACGG LIC066 121983 - 123122 + | hypothetical protein TERM 136 123211 - 123195 - f 71 -8.7 -2.90751 | overlap 123194 TTGAAGAAGGTAAAG CTAAGGC ACA GCCTCAG TAGCAATTGGCAGCA TERM 137 123669 - 123685 + G 70 -8 -3.18869 | CTCCTTGGTTTTTGT TGGACG TGTCT CGTCCA TTGCGTCCTTTGTTA LIC067 123218 - 124081 + | hypothetical protein LIC068 124084 - 124533 + | hypothetical protein LIC069 124556 - 125200 + | hypothetical protein TERM 138 125224 - 125205 - f 83 -8.6 -4.07877 | overlap 125207 GTACTTTATAAACAA CACCGCTT GATT AAGCGGTA GATATAACTATCGGG TERM 139 125222 - 125207 - f 79 -9 -3.63097 | overlap 125205 ACTTTATAAACAACA CCGCTT GATT AAGCGG TAGATATAACTATCG TERM 140 125964 - 125946 - g 78 -10.4 -2.64318 | overlap 125943 125942 AGATTATACAATTTA TTGTGTTG GGA CAACACAA TCAGAACATCTTAAA LIC070 125278 - 126693 + | phage sheath protein TERM 141 126871 - 126831 - f 88 -12.2 -2.64616 | CTTCTAGTGATAGTA GTTCTGAATGGTACTAAA TTTTT TTTAGTACCATTCAAAAA AATGAAAAGAACTTA LIC071 126956 - 127345 + | hypothetical protein LIC072 127347 - 127670 + | hypothetical protein LIC073 127923 - 128792 + | hypothetical protein TERM 142 128816 - 128837 + F 100 -6.1 -5.82281 | opp_overlap 128816, overlap 128826 TATTGAATGTAACTA TTTTTTTAT CTAT ATAAAAAAA TTTTTTTATATATTT TERM 143 128826 - 128849 + F 76 -7 -4.40333 | opp_overlap 128816, overlap 128816 AACTATTTTTTTATC TATATAAAAA AATT TTTTTATATA TTTATATTATTTCCC LIC074 129105 - 130370 + | hypothetical protein LIC075 130491 - 131522 + | putative phage tail protein LIC076 131586 - 132182 + | hypothetical protein TERM 144 132209 - 132229 + T 74 -5.5 -4.77036 | opp_overlap 132209 132208 GGACAAAGATACAAT CGCTATT CAGGGGA AATAGCG TTTTTGGTGATAGAG LIC077 133022 - 132327 - | hypothetical protein TERM 145 133262 - 133297 + r 79 -3.6 -5.65927 | gap 1 GTTTGTCGTTATTGT TATTGGATATTACAT AGTGAAC ATGTAGTA-CCAATA TTTTTTGTTTAGATA LIC078 133736 - 133350 - | protein synthesis inhibitor, putative TERM 146 133549 - 133568 + g 71 -7.8 -3.57901 | opp_overlap 133544, overlap 133547 TGGAAGCCAAGGCCA GAGGCTGC TAGT GAAGCCTC TATATTTTTCATGAC LIC079 135005 - 134013 - | hypothetical protein TERM 147 134583 - 134595 + g 81 -7.7 -4.29106 | TCGTTCGATTGTTGT TCCTC TAA GAGGA TTTCTTGGTATGAGG LIC080 136032 - 135091 - | GDP-L-fucose synthetase-related TERM 148 135897 - 135915 + g 85 -9 -4.26938 | AGGATTCTACAGCTG CTTGATTT CGT AAATCAAG TTCTTCTTTTGTACG recQ 137753 - 136395 - | replicative DNA helicase TERM 149 138369 - 138413 + H 79 -7.9 -4.01184 | opp_overlap 138364 138377, overlap 138371 138372 138375 AAAAACTGAAGTCTA TTTTAAGACCACGTCAACCTT AGG GAAGATGACGTGGTCTTACTA TTTGTGATAATGTAT TERM 150 138371 - 138411 + H 87 -10.5 -3.59266 | opp_overlap 138364 138377, overlap 138369 138372 138375 AAACTGAAGTCTATT TTAAGACCACGTCAACCTT AGG GAAGATGACGTGGTCTTAC TATTTGTGATAATGT TERM 151 138372 - 138410 + H 100 -14 -2.74836 | opp_overlap 138364 138377, overlap 138371 138369 138375 AACTGAAGTCTATTT TAAGACCACGTCAACCTT AGG GAAGATGACGTGGTCTTA CTATTTGTGATAATG TERM 152 138375 - 138407 + H 89 -11.3 -3.51406 | opp_overlap 138364 138377, overlap 138372 138371 138369 TGAAGTCTATTTTAA GACCACGTCAACCTT AGG GAAGATGACGTGGTC TTACTATTTGTGATA TERM 153 138405 - 138377 - H 77 -9.6 -3.0634 | opp_overlap 138375 138372 138371 138369 AAGTCTATTTTAAGA CCACGTCAACCT TAGGG AAGATGACGTGG TCTTACTATTTGTGA gmd 138575 - 139735 + | GDP-D-mannose dehydratase LIC083 140126 - 140452 + | hypothetical protein TERM 154 140522 - 140539 + F 100 -5.6 -5.93809 | opp_overlap 140522, overlap 140536 140537 GATAATAAAAAAAAA GACTGA ATTTCG TCAGTC TTTTTTTTATCAAAA TERM 155 140539 - 140522 - f 100 -5.6 -6.41881 | opp_overlap 140522 140536 140537 GATAATAAAAAAAAA GACTGA ATTTCG TCAGTC TTTTTTTTATCAAAA LIC084 140609 - 140983 + | phage-related membrane protein TERM 156 140990 - 141031 + T 74 -9 -3.07344 | gap 1, overlap 141015 GGATTATAAGTTTTT TGTTAGGCGTTAACA-GCA GGACG TGTATGTTAGCGTCTAACA TATGTTAACACATAC TERM 157 141015 - 141033 + T 74 -9 -3.03441 | opp_overlap 141032, overlap 140990 TAACAGCAGGACGTG TATGTTAG CGT CTAACATA TGTTAACACATACTC LIC085 142049 - 141084 - | glycosyl transferase TERM 158 141640 - 141653 + g 91 -2.3 -6.24157 | GTTTTATGGATATCC CCCCA AGGT TGTGG TTTTTTTTTGTAGGT TERM 159 141765 - 141753 - G 73 -7.7 -3.88291 | CATTATTTGGAGAAA TTGGG AGT CCCAA AGATCATCTCCATCA LIC086 143107 - 142046 - | glycosyltransferase LIC087 143397 - 143747 + | hypothetical protein LIC088 144107 - 144823 + | hypothetical protein TERM 160 145356 - 145372 + G 80 -2.9 -5.68023 | opp_overlap 145357, overlap 145357 ATTGAAAAGTATAAA CCAGCAC ACA GTGTTGC TTTTTTTGCTTATAC LIC089 144828 - 145394 + | hypothetical protein TERM 161 145849 - 145839 - T 76 -6.8 -4.54449 | opp_overlap 145845, overlap 145827 145840 AGAGGTTACACAAAA GGGT GTT ACCC CCTTGGGGAATTTGT TERM 162 146135 - 146161 + T 85 -11.2 -3.04248 | opp_overlap 146135 146142, overlap 146142 TAGTAGTGATAACAA CTAAAAATATTA GTT TAATATTTTTAG TATTAAGCAGTATTA TERM 163 146161 - 146135 - T 91 -11.2 -3.82824 | opp_overlap 146135 146142, overlap 146142 TAGTAGTGATAACAA CTAAAAATATTA GTT TAATATTTTTAG TATTAAGCAGTATTA TERM 164 146206 - 146185 - T 73 -8.9 -2.90888 | opp_overlap 146185 146196, overlap 146182 146196 AGTATTATATAAGCA GTTTACTAA AATA TTAGTAAAC TAATATTAATAACTA TERM 165 146185 - 146206 + T 73 -8.9 -2.77999 | opp_overlap 146185 146182 146196, overlap 146196 AGTATTATATAAGCA GTTTACTAA AATA TTAGTAAAC TAATATTAATAACTA LIC090 147724 - 146282 - | proton/peptide symporter family protein TERM 166 148559 - 148547 - g 72 -4.9 -4.72373 | TGAAAAAAATATAAA TTCTT CAA AAGAA AATATTGCAGCACCA TERM 167 149417 - 149391 - g 74 -6.6 -4.29508 | overlap 149387 AGTGATATTAACAAA GATAGACGACAT TCA ACGCCTTCTATC CCTGTAACAGCATTA TERM 168 149885 - 149869 - g 79 -3.7 -5.45802 | CTTCTAAAACAAAAA CTGATCT TCA AGATGAG AGTTTACAAGAAAGT TERM 169 152218 - 152200 - g 70 -4.6 -4.72277 | AAGAACAGAAAGAAA TGTTGC ATAACCA GCAACA ACAGCAAGTTAATAG TERM 170 153153 - 153138 - g 71 -3.3 -5.0707 | opp_overlap 153138 AAACAGAAAAAGAAA GAAGA GCGAGA TCTTC TTGTAGCACTTATTG TERM 171 155124 - 155114 - g 71 -5.4 -4.49937 | overlap 155115 155116 GGAAGAATATGAAAA GTTG TTA CAAC AACAGAAAGAAGAAA TERM 172 157713 - 157693 - g 70 -8.4 -3.27382 | overlap 157686 157691 157695 GTTCAACAGAAGATA CATCTTCA TCATC TGAAGATG AAGACATAGTTACAT TERM 173 158760 - 158744 - g 78 -2.2 -5.69976 | AGAAAAAAAAGAAAA TAGTCC TAGTG GGTCTA ATGAAAGTCCTTCAC TERM 174 159687 - 159708 + G 79 -5.3 -5.03715 | gap 1, opp_overlap 159687 159700, overlap 159691 ATTGAGGAGCAACAA GCAGTTTTTG AAA CAAAAA-TGC TTTTTTGGGAATCAT TERM 175 160506 - 160496 - g 71 -5.4 -4.58773 | TGCATTAAATCAAAA GCTT AAG AAGC TAAAAGATAAGTTGC TERM 176 161503 - 161489 - g 77 -5.8 -4.77867 | ACAGAGAACAGAAAA GTTAAT TAG ATTAAC AGAGGCAAAGGAAAA TERM 177 161817 - 161799 - g 80 -2.5 -5.65496 | gap 1, overlap 161802 TATGAAAAAGAAAAA GAG-TGTT TTTT AACAGCTC AAAAAAGTCAGTATG TERM 178 161853 - 161837 - g 72 -5.9 -4.31692 | AAGTCAGTATGAAAA GTTGTTA CAT CAACAAC GTCAAGAGATGAAGA TERM 179 162474 - 162490 + G 70 -8.1 -3.28791 | opp_overlap 162487, overlap 162477 GCAAAAAGTGAGTTT GAAGTTA AAG TAACTTC TTGTAGAGAAGAACT TERM 180 162993 - 163003 + G 77 -5.4 -4.93296 | opp_overlap 162990 CAAGAAATGAAGGCT CTTG AAG CAAG TTTTTATGGTGATGA TERM 181 163119 - 163135 + G 70 -3.7 -4.9218 | overlap 163120 GAAGAACTTAAACCT CTTGAAG ACC CTTCAAC TTTTTATAATCCATC TERM 182 164259 - 164269 + G 77 -5.4 -4.93296 | opp_overlap 164256 CAAGAAATGAAGGCT CTTG AAG CAAG TTTTTATGGTGATGA TERM 183 164361 - 164377 + G 70 -3.7 -4.92783 | overlap 164362 GAAGAACCTAAACCT CTTGAAG ACC CTTCAAC TTTTTATAATCCATT TERM 184 166561 - 166545 - g 83 -8.1 -4.40333 | CCTAAAGAATATAAA GATGTAT CTG ATACATC AAAAAAACAGAAAAA TERM 185 168963 - 168951 - g 74 -3.4 -5.28414 | opp_overlap 168951 GAAGAAAGACAAAAA CAAC GAGAT GTTG TTTCTTCATATCCAG TERM 186 169230 - 169210 - g 70 -8.3 -3.17146 | opp_overlap 169219 169221, overlap 169208 169221 169222 GTGTTTCAGAAGAGA GTTCAGAAG AAT CTTCTGTAC CAGAAGGTATTAGTA TERM 187 169796 - 169782 - g 70 -3.6 -4.86773 | overlap 169795 GAAAAGCAGCAAAAA GAATTA CAA CAATTC CCATCCTCAGATGAA TERM 188 171870 - 171859 - g 77 -5.8 -4.81843 | AACAAGCAAAAGAAA GAGC AGAG GCTC GTCAGAAGTATCAAA TERM 189 172131 - 172111 - g 71 -7.7 -3.62046 | opp_overlap 172111 172113 172115, overlap 172113 GTAGTGGTGTAACAA CATATTCTG ATA CAGAATATA GTTCTCTTGAAATGG TERM 190 172129 - 172113 - g 72 -8.1 -3.38991 | opp_overlap 172111 172113 172115, overlap 172111 AGTGGTGTAACAACA TATTCTG ATA CAGAATA TAGTTCTCTTGAAAT TERM 191 173028 - 173047 + G 75 -7.2 -4.1891 | CCTGTATTCCCATAT GGTAGTGA GGCA TCATTACC TTTCTCTTCAGACAA TERM 192 174166 - 174181 + G 71 -9 -3.04322 | AAGGACGTTCTGACA CCTCCA TACT TGGAGG TATTGCCCAATTGGG LIC091 148401 - 174641 + | hypothetical protein TERM 193 175187 - 175177 - g 79 -4 -5.56568 | opp_overlap 175186 ATATTACTAAAAAAA GAAA AAT TTTC TCAAATGGAGATATA LIC092 174997 - 176478 + | hypothetical protein TERM 194 176667 - 176655 - T 70 -7.7 -3.49951 | opp_overlap 176648 GATATCCGTATAGAA CTCCA TAT TGGAG AGCCATATCTTAATG LIC093 178116 - 176743 - | UDP-N-acetyl-D-mannosaminuronate dehydrogenase LIC094 179024 - 178467 - | WblC protein LIC095 180190 - 179021 - | DegT/DnrJ/EryC1/StrS family protein LIC096 180551 - 180177 - | hypothetical protein TERM 195 180272 - 180282 + g 95 -2.6 -6.48081 | AAAATCTATAGTTAG TTAT GGG ATAA TTTTTTTTTTGTGAA LIC097 181768 - 180716 - | WblB protein TERM 196 181794 - 181830 + r 74 -8.9 -2.94099 | overlap 181797 CCTTTTGCTTGTTAG TTTTAGGTCTGGTATGT ACA ATATACCATACCTATAA TCTCTGATAAACAGA TERM 197 181797 - 181827 + r 82 -10.6 -2.71268 | overlap 181794 TTTGCTTGTTAGTTT TAGGTCTGGTATGT ACA ATATACCATACCTA TAATCTCTGATAAAC TERM 198 182043 - 182012 - R 100 -14.7 -5.50499 | opp_overlap 182012 TTATATGTAAAAAAA TCCATGTACTCTA TGTTTT TAGAGTACATGGA TTTTTAAGTATACCT TERM 199 182012 - 182043 + r 100 -14.7 -4.71061 | opp_overlap 182012 TTATATGTAAAAAAA TCCATGTACTCTA TGTTTT TAGAGTACATGGA TTTTTAAGTATACCT LIC098 183431 - 182091 - | methyl-accepting chemotaxis protein TERM 200 183976 - 183946 - R 100 -14.9 -3.62723 | opp_overlap 183948, overlap 183942 TATGTAAATAATGAA CAGGCCTAATAAC ATATA GTCATTAGGCCTG CATTGACGATGCTAC TERM 201 183948 - 183974 + r 75 -9.5 -2.53382 | opp_overlap 183946 183942 TGTAAATAATGAACA GGCCTAATAAC ATATA GTCATTAGGCC TGCATTGACGATGCT TERM 202 184019 - 184000 - R 87 -9.4 -4.01888 | opp_overlap 183999 183998 184000 ATGCTACAGTATAAA GTTCAGTT GAAA AACTGAAC AGTTTTTATATGGAC TERM 203 184000 - 184019 + r 75 -9.4 -2.74094 | opp_overlap 184000, overlap 183999 183998 ATGCTACAGTATAAA GTTCAGTT GAAA AACTGAAC AGTTTTTATATGGAC LIC099 185472 - 184429 - | hypothetical protein LIC100 186166 - 186576 + | hypothetical protein LIC101 186732 - 187613 + | hypothetical protein TERM 204 187987 - 187952 - f 100 -11.4 -5.44721 | opp_overlap 187952 AGTATTGTAAAAAAA TAAAGTCTATACTTAC CATA GCAAGCACAGACTTTA TTATTTAATGGTTTT yhjA 188379 - 189776 + | putative cytochrome C peroxidase TERM 205 189821 - 189805 - T 100 -10.9 -5.4251 | opp_overlap 189805 TCTATATATAAAAAA GGAAGCT GTA AGCTTCC TTTTTTATTAACTAG TERM 206 189805 - 189821 + T 100 -10.9 -5.4833 | opp_overlap 189805 TCTATATATAAAAAA GGAAGCT GTA AGCTTCC TTTTTTATTAACTAG TERM 207 190261 - 190300 + T 100 -19 -3.93583 | opp_overlap 190261 190264, overlap 190256 190264 TGTATTAGATGTAAA GAAGGATTCTTTTCTTTT AACT AAGAGAAAAGAATCCTTC TTTATGGGTAAATTA TERM 208 190300 - 190261 - T 100 -16.8 -3.727 | opp_overlap 190256 190261 190264, overlap 190264 TGTATTAGATGTAAA GAAGGATTCTTTTCTTTT AACT AAGAGAAAAGAATCCTTC TTTATGGGTAAATTA TERM 209 190264 - 190297 + T 100 -14.9 -4.09117 | opp_overlap 190261 190264, overlap 190256 190261 ATTAGATGTAAAGAA GGATTCTTTTCTTTT AACT AAGAGAAAAGAATCC TTCTTTATGGGTAAA TERM 210 190297 - 190264 - T 100 -12.7 -3.99315 | opp_overlap 190256 190264 190261, overlap 190261 ATTAGATGTAAAGAA GGATTCTTTTCTTTT AACT AAGAGAAAAGAATCC TTCTTTATGGGTAAA pilJ 192417 - 190321 - | methyl-accepting chemotaxis protein TERM 211 192559 - 192571 + r 76 -3.5 -5.52384 | opp_overlap 192561 192570, overlap 192554 192570 GATATATACTTTTAA TATTT ATT AAATA TTTTTTTAATAAAAA TERM 212 193120 - 193130 + r 77 -5.4 -5.02074 | opp_overlap 193120 TATGAAGCACAACAA GCAT ATG ATGC TTTTTTGACAAGTGG TERM 213 193535 - 193555 + r 100 -14.1 -5.626 | opp_overlap 193535 ATCTTCTGTTTGAAA CATCCCTGA TAG TCAGGGATG TTTTTTTATCGAGTA TERM 214 193555 - 193535 - R 100 -14.1 -3.53091 | opp_overlap 193535 ATCTTCTGTTTGAAA CATCCCTGA TAG TCAGGGATG TTTTTTTATCGAGTA LIC104 194466 - 193810 - | hypothetical protein