TransTermHP v2.07 (built on Jan 21 2009) 25 bins; sample size is 20000000 --pval-conf=/fs/szasmg2/carlk/TTupdate2/expterm.dat --gc=-2.3 --au=-0.9 --gu=1.3 --mm=3.5 --gap=6 --max-len=59 --min-stem=4 --max-loop=13 --min-loop=3 --uwin-length=6 --uwin-require=3 --max-hp-score=-2 --max-tail-score=-2.5 --loop-penalty=1,2,3,4,5,6,7,8,9,10,11 --start-cut=0 --end-cut=25 Genes: 0.320524 %AT, 6176071 nt, 45921 terms. Intergenic: 0.36741 %AT, H2T: 604510 nt, 4042 terms; T2T: 200778 nt, 3153 terms; H2H: 306871 nt, 4105 terms. Each terminator entry starts in column 3 and is of the form: term # start - end +/- regionconf hp tail | notes Followed by the sequence of the 5' tail, 5' stem, loop, 3' stem, and 3' tail. Genes are interspersed, and start the first column. SEQUENCE gi|118467340|ref|NC_008596.1| Mycobacterium smegmatis str. MC2 155, complete genome (length 6988209) TERM 1 711 - 727 + G 73 -12.3 -3.46602 | opp_overlap 710 711, overlap 725 GGTGAGCGCTGAAAT CGCTTCC GCC GGAAGCG TTCTGGTGTCCGGAC dnaN 499 - 1692 + | DNA polymerase III subunit beta MSMEG_0002 1721 - 2614 + | 6-phosphogluconate dehydrogenase-like protein recF 2624 - 3778 + | recombination protein F MSMEG_0004 3775 - 4359 + | hypothetical protein gyrB 4591 - 6618 + | DNA gyrase subunit B gyrA 6648 - 9176 + | DNA gyrase subunit A TERM 2 9389 - 9331 - g 79 -19 -2.52516 | gap 3, overlap 9330 GCCCTCAGCAGCAAC TCGACGCGGGCCACGGG-GCACATCACCG ATTC CGGTGACGTGCCCCCGTGGCA-GCG-CGG GGTCTCCCGCACCGC MSMEG_0007 9229 - 10011 + | hypothetical protein MSMEG_0009 10184 - 10276 + | hypothetical protein MSMEG_0011 10411 - 11211 + | FAD-binding 9, siderophore-interacting MSMEG_0012 11215 - 12246 + | ferric enterobactin transport system permease protein FepD MSMEG_0015 13310 - 14140 + | ferric enterobactin transport ATP-binding protein FepC MSMEG_0014 15098 - 14130 - | Formyl transferase MSMEG_0016 15256 - 15522 + | hypothetical protein MSMEG_0017 15525 - 17252 + | ABC transporter, permease/ATP-binding protein TERM 3 17702 - 17718 + G 72 -6.5 -4.2461 | GTCGCGCAGGTGTTA CCGGTGA TCC TCAACGG TTTCTTCCTCGGCGT MSMEG_0018 17249 - 19018 + | ABC transporter, permease/ATP-binding protein TERM 4 24066 - 24098 + G 71 -10.4 -3.70149 | opp_overlap 24052, overlap 24067 24090 ACGCCGCCGTGCCCT TCACGCCGGTGCCG GTGGA CGGCGCCGACGCGG TTTCGGTGCTCTACA TERM 5 28971 - 28961 - g 70 -8.2 -3.87815 | overlap 28962 GTCGAGGCCGAGAAA GCCG CGG CGGC AGCCGAACTCGACCC TERM 6 30583 - 30541 - g 82 -14.9 -3.44051 | gap 1 CGTCGACCACTACAA CGCCGCGATCGGCGTGGGGT CCGC ACCGCA-GCCGATCACGGTG ACGCTTCGCGACCAC TERM 7 38786 - 38801 + G 73 -7.5 -4.14472 | opp_overlap 38773, overlap 38780 AATCCCCCACGCGTG GCGGG GCGCAA CCCGC TTTTCAACCTGTTCG MSMEG_0019 19052 - 41623 + | amino acid adenylation TERM 8 41627 - 41679 + T 80 -14 -3.31144 | gap 2, opp_overlap 41637 GCTTCTGGATAGTGG CCGGAAGACAGCGGTGCCCCGCCGCG GCG TGCGGCGGGGCACCGG-GAAA-CCGG TTGTGCGCGTCAGGC TERM 9 41671 - 41637 - T 100 -24.3 -3.06815 | opp_overlap 41627 AGTGGCCGGAAGACA GCGGTGCCCCGCCGC GGCGT GCGGCGGGGCACCGG GAAACCGGTTGTGCG MSMEG_0020 42636 - 41689 - | periplasmic binding protein panD 42944 - 43354 + | aspartate 1-decarboxylase MSMEG_0022 43366 - 44688 + | L-ornithine 5-monooxygenase MSMEG_0023 45102 - 44692 - | hypothetical protein MSMEG_0024 45223 - 45750 + | peptidyl-prolyl cis-trans isomerase B MSMEG_0025 46261 - 45854 - | hypothetical protein MSMEG_0026 46701 - 46417 - | putative septation inhibitor protein MSMEG_0027 46797 - 47546 + | hypothetical protein MSMEG_0029 47564 - 48238 + | para-aminobenzoate synthase component II MSMEG_0028 50093 - 48216 - | serine-threonine protein kinase TERM 10 48467 - 48516 + g 79 -15.7 -3.31144 | gap 1, overlap 48468 48512 TGTCCTTGGGCACCG ACTGGCCGTCGGCCGGTTCGGT ACCGACC ACCTGACCGGCCG-CGGCCGGG TTGTCGACCTCGACG TERM 11 48468 - 48515 + g 79 -19.2 -2.58544 | gap 1, overlap 48467 48512 GTCCTTGGGCACCGA CTGGCCGTCGGCCGGTTCGGT ACCGACC ACCTGACCGGCCG-CGGCCGG GTTGTCGACCTCGAC pknA 51349 - 50090 - | serine/threonine protein kinase PknA MSMEG_0031 52856 - 51381 - | penicillin binding protein transpeptidase domain-containing protein TERM 12 52602 - 52590 - G 71 -10.5 -3.68988 | GCCCAGCGAATAGAA CCCGG TGA CCGGG GCGTAGGCCTGCGGG MSMEG_0032 54268 - 52853 - | cell cycle protein, FtsW/RodA/SpoVE family protein MSMEG_0033 55803 - 54265 - | protein phosphatase 2C MSMEG_0034 56293 - 55826 - | FHA domain-containing protein MSMEG_0035 57892 - 56429 - | FHA domain-containing protein MSMEG_0036 58140 - 58033 - | hypothetical protein TERM 13 58271 - 58232 - R 81 -16.4 -2.62184 | opp_overlap 58234 58238 CCTTCGCCCACAGCA GCCAGAGGCCGCGGATTC AGCA GAGTCCGCGGCCTTTGTC GTTGGACGGGGCCAT TERM 14 58234 - 58269 + r 100 -22 -2.70932 | opp_overlap 58232, overlap 58238 TTCGCCCACAGCAGC CAGAGGCCGCGGATTC AGCA GAGTCCGCGGCCTTTG TCGTTGGACGGGGCC TERM 15 58238 - 58265 + r 100 -19.2 -4.05446 | opp_overlap 58232, overlap 58234 CCCACAGCAGCCAGA GGCCGCGGATTC AGCA GAGTCCGCGGCC TTTGTCGTTGGACGG MSMEG_0039 59029 - 58655 - | small membrane hydrophobic protein MSMEG_0040 59346 - 59041 - | hypothetical protein TERM 16 59388 - 59371 - R 75 -14.1 -3.03443 | CCAGGACCACACACA GCGCGGC CACG GCCGCGC CCTGCAATACCGCGC MSMEG_0041 59824 - 59348 - | hypothetical protein MSMEG_0042 59900 - 60463 + | TetR-family protein transcriptional regulator MSMEG_0043 61303 - 60479 - | extradiol ring-cleavage dioxygenase, class III enzyme, subunit B TERM 17 62755 - 62719 - g 83 -20.2 -2.80935 | gap 1 ACCTCACCGAGGAGA CCGGATCCGACGGGCGC CGCC GCGCCCGTCTGA-CCGG GGTGACGTGGCCCTC MSMEG_0044 61470 - 63548 + | hypothetical protein MSMEG_0045 63545 - 66013 + | hypothetical protein MSMEG_0046 66010 - 67167 + | hypothetical protein MSMEG_0047 68117 - 67182 - | hypothetical protein MSMEG_0048 68264 - 68767 + | pyridoxamine 5'-phosphate oxidase family protein MSMEG_0049 69734 - 68769 - | pirin domain-containing protein MSMEG_0050 69779 - 70045 + | hypothetical protein TERM 18 70110 - 70165 + T 85 -16.9 -3.0497 | gap 2, opp_overlap 70148 AGCGACGAAGTGGAT GGGGCCCGGGGCATGCCCGGCACCGTC GGAA GATG-TAACGGG-ATACCCCGGGCCCC TATTCCCCCTCATGT MSMEG_0051 70527 - 70234 - | transcription factor WhiB family protein TERM 19 71086 - 71073 - g 75 -5.2 -4.56775 | ATCGCGTTCGAAAAA GGCC GGAGTT GGCC GCGCGAGCGAACTCG MSMEG_0052 70911 - 71690 + | hypothetical protein MSMEG_0054 71738 - 72823 + | ISMsm2, transposase MSMEG_0053 74208 - 72820 - | hypothetical protein TERM 20 73309 - 73293 - G 79 -15.1 -3.35679 | TCGCGGCATCGAGAA CCCGGCG CCG CGCCGGG GTCGACTCGCCGGCC TERM 21 76060 - 76006 - g 81 -2.6 -4.98436 | gap 1 CGAAGACGACAAAAA GCCCGCGATGA-CGTTGCCGCCG GACCTGCAGG CGGCGTCGGCGCTCGACACGGGC GCCGGGTCTGCGCCG MSMEG_0055 74600 - 76177 + | hypothetical protein MSMEG_0056 76213 - 76530 + | hypothetical protein TERM 22 76611 - 76560 - g 71 -11.4 -3.55444 | overlap 76561 CGTTCACCGCCGAAA CCGGCGACGCCCACATCGACGACG TGGT CGGCGTCGAGGTCACCATCGACGG GATGCTGGTGATCGC MSMEG_0057 76535 - 77383 + | hypothetical protein MSMEG_0058 77398 - 77925 + | hypothetical protein MSMEG_0059 77918 - 79642 + | ATPase, AAA family protein MSMEG_0060 79650 - 81089 + | hypothetical protein TERM 23 82842 - 82825 - g 73 -12.7 -3.44051 | CGCCGAGTACGAGAA GCACCGC GAAC GCGGTGC CGATCTGCCGCCGTT MSMEG_0061 81089 - 83317 + | ftsk/SpoIIIE family protein TERM 24 84175 - 84161 - g 81 -7.2 -4.62069 | GTGTCACTCGAAAAA CATCAT TTG ATGATG GGGGTGCCACGACTC TERM 25 84677 - 84664 - g 71 -9.5 -3.68222 | CGTCAACCTCAAGAA GCGGC TGCC GCCGC CGGATCTGACCACCG TERM 26 84998 - 84987 - g 81 -7.2 -4.64676 | TCATCGTCAAGAAAA GGCC CCCT GGCC AGGCATTCCTTGTCG MSMEG_0062 83318 - 85099 + | ftsk/SpoIIIE family protein MSMEG_0063 85248 - 85541 + | PE family protein TERM 27 85700 - 85647 - g 72 -13.2 -3.20078 | gap 3, opp_overlap 85662, overlap 85645 CACCGGAGATCAACA CCGCT-C-GCCTG-ATGGTCGGCGCCG GCC CGGCGCCGATGTTGCAGGCCGCAGCGG GTTGGGAGGGTCTGG TERM 28 85662 - 85682 + G 85 -18.3 -3.01712 | opp_overlap 85645 85647 CCGCTCGCCTGATGG TCGGCGCCG GCC CGGCGCCGA TGTTGCAGGCCGCAG MSMEG_0064 85616 - 86911 + | PPE family protein MSMEG_0065 86997 - 87299 + | hypothetical protein MSMEG_0066 87331 - 87618 + | early secretory antigenic target, 6 kDa TERM 29 87638 - 87679 + F 74 -14.6 -2.64616 | gap 2 GCCGATGCACGTTGG TGGGCGGGATATCGGACATC CATG GATGCCCG--ATCCCGCCCA TCATGTGCGTGCGGG TERM 30 87900 - 87873 - g 73 -9.8 -3.85698 | gap 1, overlap 87874 CCGGCGGGGGAGAAA CCGCCCGCCGATG CGC CTTCGG-GGGCGA TGCCCGTCGCGCCGA MSMEG_0067 87738 - 89162 + | hypothetical protein TERM 31 89500 - 89555 + G 78 -16.2 -3.01712 | gap 1 CCGCACCGAGCGGTA CCGGCCGCTGGTCGAGGAT-GTGATCG ATG CGATCGCGGTGCTCGACGAGTCGCCGG TGTTCGACCGCACGG MSMEG_0068 89159 - 90691 + | transmembrane protein MSMEG_0069 91173 - 91874 + | translation initiation factor IF-2 protein MSMEG_0070 92737 - 93072 + | hypothetical protein TERM 32 94521 - 94505 - g 74 -10.8 -3.7108 | ACCGGCACAGCCAAA CGCCGC GGGGG GCGGCG CGCAGGTCGCACCGA MSMEG_0071 93072 - 95339 + | hypothetical protein MSMEG_0074 96469 - 97935 + | IS1549, transposase MSMEG_0075 99229 - 99585 + | hypothetical protein TERM 33 100071 - 100052 - g 73 -12.8 -3.52787 | overlap 100066 GATCGAAGAGCAGAA GGCGGCCG AACT CAGCCGCC AGATGAATGGCAGCG TERM 34 100422 - 100445 + G 70 -8.9 -3.91897 | gap 1 GGTGCCGAGTGTGGC CGTC-TGGCC CAAGA GGCCACGACG TTTGTCGATGCGCAC MSMEG_0076 99798 - 101360 + | antigen MTB48 MSMEG_0077 102093 - 101776 - | hypothetical protein MSMEG_0078 102702 - 102127 - | hypothetical protein MSMEG_0079 103682 - 102936 - | hypothetical protein MSMEG_0080 104243 - 103713 - | hypothetical protein MSMEG_0081 104583 - 104251 - | hypothetical protein MSMEG_0082 105988 - 104594 - | hypothetical protein TERM 35 105063 - 105051 - G 79 -4.7 -4.79667 | overlap 105041 AAAAGGCACGAAAAA CCGCG CGG CGTGG TCGGATTCGCCAGTG MSMEG_0083 107334 - 105985 - | membrane-anchored mycosin mycp1 TERM 36 106552 - 106594 + g 74 -13.3 -3.29144 | gap 1 GGTCTGCACTTCGCG CCAGCCGCGCGGATCGGACG GCAC CGACGGGTCCG-GCGGCGGG TTCTGCGAGCAGTCC MSMEG_0084 107822 - 107565 - | phosphocarrier protein HPr MSMEG_0085 109849 - 107834 - | PTS system, Fru family protein, IIABC components MSMEG_0086 110829 - 109846 - | 1-phosphofructokinase TERM 37 110482 - 110526 + g 72 -8.3 -4.02108 | overlap 110487 110513 GACGCACCGCGTGAT CGCATCGAGCGCCGCGGCGTC GAG GGTGGCGCCACGCTCGTTGAG TTTGGTTGTGGTGCC MSMEG_0087 111593 - 110826 - | glucitol operon repressor TERM 38 112009 - 111981 - g 79 -10.9 -4.03234 | GGTGCGGCAGACAAA CGTATCGCCGCGG GCG CCCCAGCGGTACG TGCGGTCTCCGAAGC ptsI 111735 - 113369 + | phosphoenolpyruvate-protein phosphotransferase MSMEG_0089 113433 - 114407 + | chromosome condensation protein MSMEG_0090 116594 - 114447 - | hypothetical protein MSMEG_0091 117193 - 116600 - | putative transcriptional regulator MSMEG_0092 117306 - 117941 + | transcriptional regulatory protein MSMEG_0093 118003 - 118965 + | methyltransferase MSMEG_0095 118962 - 119897 + | methyltransferase MSMEG_0094 120057 - 119878 - | hypothetical protein MSMEG_0096 120261 - 121115 + | peroxisomal hydratase-dehydrogenase-epimerase TERM 39 121212 - 121232 + G 70 -14.7 -2.71144 | overlap 121214 GATGCGGTCATCATC GACGTCGGC GCC GCCGGCGTC TGCTTCCCCGACCTG MSMEG_0097 121119 - 122084 + | oxidoreductase, zinc-binding dehydrogenase family protein MSMEG_0098 122105 - 122818 + | methyltransferase MSMEG_0099 122829 - 123314 + | hypothetical protein MSMEG_0101 123311 - 123865 + | hypothetical protein MSMEG_0100 124643 - 123837 - | phosphotyrosine protein phosphatase ptpb MSMEG_0102 125875 - 124640 - | putative acyl-CoA dehydrogenase MSMEG_0103 127099 - 125900 - | major facilitator family protein transporter MSMEG_0104 128024 - 127143 - | transcriptional regulator, LysR family protein TERM 40 128110 - 128138 + G 74 -15.4 -3.01712 | opp_overlap 128108 128107 CATGTCAGACAAGGT TCGGGTGGTCGT GGGCG ACGACCATCCGA TGTTCCGCGAGGGCG MSMEG_0105 128084 - 128734 + | DNA-binding response regulator, LuxR family protein MSMEG_0106 128750 - 129916 + | sensory histidine kinase MSMEG_0107 131527 - 129926 - | cell envelope-related function transcriptional attenuator MSMEG_0108 132709 - 131570 - | acyl-CoA dehydrogenase pntB 134153 - 132711 - | NAD(P) transhydrogenase, beta subunit pntA 135713 - 134172 - | NAD(P) transhydrogenase subunit alpha TERM 41 134498 - 134526 + g 82 -6.5 -4.78572 | overlap 134499 CGGCGAACGCCACTG CCAGCCGGCGCCC GGT GGACATCGGCTGC TTTTCTTCCTTGACC MSMEG_0111 136787 - 135783 - | putative magnesium transport protein MSMEG_0112 136912 - 136796 - | hypothetical protein MSMEG_0113 136950 - 137810 + | taurine transport system permease protein TauC MSMEG_0114 137817 - 138845 + | extracellular solute-binding protein, family protein 3 TERM 42 139313 - 139265 - g 77 -17.3 -2.62735 | opp_overlap 139296, overlap 139246 AGATCTGGGAGATCA GCGGCGGCCAGCAGCAGCGCG TGGCGAT CGCGCGGGCACTGGCCGCCGA GACCCCGCTGTTCCT MSMEG_0116 138829 - 139626 + | taurine import ATP-binding protein TauB dehII 140287 - 139607 - | haloacid dehalogenase, type II MSMEG_0117 141147 - 140284 - | hydrolase TERM 43 141714 - 141690 - g 85 -17.1 -3.18681 | CGGCAACCGCATGAA GGCGCGCAGGT ATT ACCAGCGCGCC AAGGGGAGTGAGAAG MSMEG_0118 141232 - 141732 + | hypothetical protein MSMEG_0119 141850 - 141740 - | hypothetical protein MSMEG_0120 141969 - 142628 + | transcriptional regulatory protein MSMEG_0121 142625 - 143398 + | rhamnolipids biosynthesis 3-oxoacyl-[acyl-carrier-protein] reductase TERM 44 143805 - 143777 - g 85 -18.1 -3.14211 | ATTCCCGGTGATCAA TCGCGAAGGCGCC AAC GGCGCCCTCGCGG CCGCCGAGGTCTCCA MSMEG_0122 143535 - 144542 + | putative periplasmic solute-binding protein MSMEG_0123 144542 - 145048 + | hypothetical protein MSMEG_0125 145067 - 146593 + | integral membrane protein MSMEG_0124 147232 - 146549 - | transcriptional regulator, GntR family protein MSMEG_0126 148347 - 147229 - | mandelate racemase/muconate lactonizing enzyme MSMEG_0127 149478 - 148387 - | oxidoreductase, zinc-binding dehydrogenase family protein MSMEG_0128 149514 - 149963 + | thioesterase superfamily protein TERM 45 150374 - 150352 - g 78 -13.4 -3.63694 | ACCGATGGTCAAGAA GCTCGCGGGT GAG ACCCTCGAGC ACCTCGCGAAGGCCC MSMEG_0129 149990 - 150424 + | cyclase/dehydrase family protein MSMEG_0130 151123 - 150431 - | transcriptional regulator, GntR family protein TERM 46 150671 - 150641 - G 72 -8.9 -3.96624 | GACGTGCAGCAGAAA CCACGCCAGCTTG ATGCG CCCGCTGGCATGG TTGAACGCACGGTGG MSMEG_0131 151273 - 152907 + | acyl-CoA synthetase TERM 47 153153 - 153174 + G 71 -11.5 -3.64487 | opp_overlap 153153 TGGCCAGTTGGAGAA GCCGCTGGC GACG GTCGGCGGC TTCTTCAAGATGTCG MSMEG_0132 153100 - 153900 + | hypothetical protein TERM 48 153923 - 153943 + G 82 -16.1 -3.31792 | ACTGTTCAGGTTCTC CGCTCGCGG TTC CCGCGGGCG TTCTCACGCTCCTCC MSMEG_0133 153902 - 154771 + | ABC-transporter integral membrane protein MSMEG_0134 154776 - 156005 + | virulence factor Mce family protein MSMEG_0135 156002 - 157033 + | virulence factor Mce family protein MSMEG_0136 157030 - 158604 + | virulence factor Mce family protein, putative MSMEG_0137 158623 - 160266 + | virulence factor mce family protein MSMEG_0138 160266 - 161438 + | virulence factor Mce family protein TERM 49 162164 - 162113 - gf 76 -14.3 -3.09492 | gap 1, overlap 162138 CGGCCAACCTCAACA CGCTGGCCGC-GCAGAGCGCCCAG AACGA CGAGGCGCTGCGCAGCGGCCTGCA GCAGGCGGCCCCGAC MSMEG_0139 161440 - 162996 + | mce-family protein mce1f MSMEG_0140 162966 - 163574 + | mce associated membrane protein MSMEG_0141 163571 - 164539 + | mce associated transmembrane protein MSMEG_0142 164536 - 165084 + | hypothetical protein MSMEG_0143 165051 - 165941 + | mce associated membrane protein MSMEG_0145 165944 - 166612 + | hypothetical protein MSMEG_0144 168477 - 166609 - | HNH endonuclease TERM 50 167876 - 167851 - G 95 -23.3 -2.72344 | opp_overlap 167868 GCCGATGTCGAAGTA GCGGCCGCGCC GCGA GGCGCGGCCGC GGCGGAAAGACCCGG MSMEG_0146 169361 - 168543 - | mosc domain-containing protein MSMEG_0147 170333 - 169419 - | C-5 sterol desaturase MSMEG_0148 170996 - 170367 - | transcriptional regulator, TetR family protein MSMEG_0149 172504 - 171077 - | thiamine biosynthesis protein ThiC TERM 51 172431 - 172465 + g 74 -14.3 -3.28712 | gap 1 GAACTGCCCGGTATG GGGCCGG-TTGGGACG CCGG TGTCCCGGTCCGGCCC TTGTGGGGCCGGGCC MSMEG_0150 173934 - 172501 - | NAD(P) transhydrogenase beta subunit MSMEG_0151 174254 - 173931 - | PntAB protein MSMEG_0152 175340 - 174258 - | alanine dehydrogenase/pyridine nucleotide transhydrogenase panE 175555 - 176568 + | 2-dehydropantoate 2-reductase TERM 52 176592 - 176580 - g 83 -4.7 -4.85396 | overlap 176581 176582 ATAAGGAGAAGAAAA TGGCG AAT CGCCG CGCAAAGATCGTCTG pyk 176579 - 178012 + | pyruvate kinase MSMEG_0155 178524 - 178054 - | transcriptional regulator MSMEG_0156 178631 - 179557 + | transcriptional regulator, LysR family protein MSMEG_0157 179717 - 181450 + | putative oxalyl-CoA decarboxylase MSMEG_0158 181519 - 182781 + | formyl-coenzyme A transferase TERM 53 182792 - 182823 + F 93 -19.5 -3.01712 | CGTAGCACTCGCACA CCGCCCCATGTCG CCTACC CGGCATGGGGCGG TGTTCGGCACCGAAA MSMEG_0159 182884 - 183369 + | formate dehydrogenase, gamma subunit MSMEG_0160 183366 - 184964 + | formate dehydrogenase, beta subunit MSMEG_0161 184961 - 187780 + | formate dehydrogenase, alpha subunit TERM 54 187876 - 187904 + G 70 -12.4 -3.28712 | gap 1, opp_overlap 187871 CCGAGGACAAGGCGG CCG-CGGCCGTGG CCGA CCACGTCCGGCGG TTCTGGGAGCCACGG MSMEG_0162 187782 - 188006 + | NAD-dependent formate dehydrogenase delta subunit TERM 55 188056 - 188014 - T 100 -19.3 -3.35996 | gap 1, opp_overlap 188015 188018, overlap 188015 188017 TACGCTGACCCACAA CGACTTTGGCCTGGGCCCCC GGAG AGGGGCCCAGGCCAAA-TCT TTTGTCCGGTGTGTC TERM 56 188015 - 188055 + T 100 -22.1 -4.4195 | gap 1, opp_overlap 188014 188015 188017, overlap 188018 ACGCTGACCCACAAC GACTTTGGCCTGGGCCCC CGGAGA GGGGCCCAGGCCAAA-TC TTTTGTCCGGTGTGT TERM 57 188055 - 188015 - T 100 -22.8 -2.61383 | gap 1, opp_overlap 188015 188018, overlap 188014 188017 ACGCTGACCCACAAC GACTTTGGCCTGGGCCCCC GGAG AGGGGCCCAGGCCAAA-TC TTTTGTCCGGTGTGT TERM 58 188054 - 188017 - T 100 -22.1 -2.8474 | opp_overlap 188015 188018, overlap 188015 188014 GCTGACCCACAACGA CTTTGGCCTGGGCCCCC GGAG AGGGGCCCAGGCCAAAT CTTTTGTCCGGTGTG TERM 59 188018 - 188053 + T 100 -24.9 -3.81279 | opp_overlap 188017 188015 188014, overlap 188015 CTGACCCACAACGAC TTTGGCCTGGGCCCC CGGAGA GGGGCCCAGGCCAAA TCTTTTGTCCGGTGT MSMEG_0163 188381 - 188070 - | hypothetical protein MSMEG_0164 189770 - 188427 - | transmembrane transport protein TERM 60 189201 - 189191 - G 72 -8.2 -4.08216 | CGACCGCCGTGAAAA GCGC TGT GCGC GTGGTCGATGTCAGG fdhD 189944 - 190786 + | formate dehydrogenase accessory protein MSMEG_0166 191545 - 190817 - | GntR-family protein transcriptional regulator TERM 61 191674 - 191718 + r 100 -19.2 -3.64866 | gap 1, opp_overlap 191674 191677 CGTACGCACAGAAAA CAACCCCGGGCGCGGCG-GTC ATGT GACTCACCGCGCCCGGGGCCG TTTCAACTGTGGTGT TERM 62 191718 - 191674 - R 100 -25.8 -4.55287 | gap 1, opp_overlap 191674, overlap 191677 CGTACGCACAGAAAA CAACCCCGGGCGCGGCG-GTC ATGT GACTCACCGCGCCCGGGGCCG TTTCAACTGTGGTGT TERM 63 191715 - 191677 - R 100 -26.1 -4.38744 | gap 1, opp_overlap 191674, overlap 191674 ACGCACAGAAAACAA CCCCGGGCGCGGCG-GTC ATGT GACTCACCGCGCCCGGGG CCGTTTCAACTGTGG MSMEG_0167 193149 - 191746 - | transmembrane transport protein MSMEG_0168 193685 - 194971 + | formyl-coenzyme A transferase MSMEG_0169 195203 - 195087 - | hypothetical protein MSMEG_0170 195185 - 196567 + | transmembrane transport protein TERM 64 196614 - 196576 - fH 81 -13.1 -3.68569 | overlap 196577 GGACTGACCGAACAA CCGGCCGAGGGGGTC ATGGAGGGG GATCCCCTCGGCCGT GTCCACACGAATACG TERM 65 196613 - 196577 - fH 84 -16.6 -2.8082 | overlap 196576 GACTGACCGAACAAC CGGCCGAGGGGGTC ATGGAGGGG GATCCCCTCGGCCG TGTCCACACGAATAC MSMEG_0171 196658 - 197587 + | histone deacetylase superfamily protein MSMEG_0172 198190 - 197588 - | transmembrane protein, putative TERM 66 197751 - 197770 + g 72 -8.5 -3.96148 | TCGGACTCGGTCTTC GGTGCCG ACGTCA CGGCGCC TTTCTCGTCGAGCCA TERM 67 198166 - 198177 + g 90 -7.2 -4.99035 | opp_overlap 198166, overlap 198135 CCGTACCAGACGGAA CCCG TGCG CGGG TTTTTGTATACATAC MSMEG_0173 198691 - 198371 - | hypothetical protein MSMEG_0174 199059 - 198688 - | putative inner membrane protein MSMEG_0175 199157 - 200293 + | FAD dependent oxidoreductase, putative MSMEG_0176 200304 - 201158 + | glutamine ABC transporter periplasmic-binding protein MSMEG_0177 201116 - 202087 + | ABC polar amino acid family protein transporter, inner membrane subunit MSMEG_0178 202084 - 202866 + | ATP-binding protein MSMEG_0179 203547 - 202876 - | transcriptional regulator, GntR family protein MSMEG_0180 204173 - 203664 - | putative HTH-type transcriptional regulator MSMEG_0181 204225 - 205163 + | alpha-ketoglutarate-dependent taurine dioxygenase MSMEG_0182 205190 - 206347 + | epoxide hydrolase 1 TERM 68 206678 - 206712 + GT 71 -12.9 -2.93089 | gap 2, overlap 206675 TGCCGGGAGCCGGTG CG-CT-CGCGGCGGCGG TGC CCGCCGCTGTGGAGACG TGGTTTCACCTGCTG TERM 69 207925 - 207947 + GT 77 -14.8 -2.82516 | CCCGGGTCGTTCGTG CCGCGTACCG CAT CGGAACGCGG TGTGGTGGTGGAGGA MSMEG_0183 208584 - 208033 - | hypothetical protein MSMEG_0184 206362 - 208134 + | transferase MSMEG_0185 211442 - 208581 - | MmpL6 protein MSMEG_0186 211915 - 211421 - | MmpS2 protein MSMEG_0188 212103 - 212558 + | MarR-family protein transcriptional regulator MSMEG_0187 213024 - 212548 - | acetyltransferase anmK 214165 - 212999 - | anhydro-N-acetylmuramic acid kinase MSMEG_0190 215742 - 214183 - | integral membrane transport protein MSMEG_0191 216680 - 215751 - | BadF/BadG/BcrA/BcrD ATPase family protein TERM 70 217682 - 217698 + G 76 -7.9 -4.30809 | overlap 217676 CCGGATCGCGCAGTT GGCCGTC GTC GACTGCC TTTTCGTGGGTGTTG MSMEG_0192 216912 - 217814 + | transcriptional regulator, RpiR family protein murQ 217828 - 218724 + | N-acetylmuramic acid-6-phosphate etherase MSMEG_0194 219423 - 218725 - | serine esterase, cutinase family protein TERM 71 219540 - 219557 + H 78 -12.7 -3.54741 | overlap 219521 GGCGCGTCCCGAATG CGACGGC GGTC GCCGTCG TTTCACCGGGTGGTA MSMEG_0195 219598 - 221238 + | steroid monooxygenase TERM 72 221857 - 221824 - g 80 -16 -3.14132 | gap 1 GGGTGGGTCGAGTAA CGCCGCAC-TCGCCC GGGTT GGGCGTCGTGCGGCG GGCTGGATCGGATTC MSMEG_0196 221243 - 222139 + | putative dehydrogenase MSMEG_0197 222793 - 222149 - | nudix hydrolase MSMEG_0198 223936 - 222803 - | acyl-CoA dehydrogenase domain-containing protein TERM 73 225225 - 225201 - g 70 -8.5 -3.91716 | overlap 225205 225206 GCAGCGCGCAAAGAA GATAGCGACGC TCA GCGCTGCTACC GTCACGGCCACGGCG MSMEG_0200 225160 - 227712 + | hypothetical protein TERM 74 227737 - 227784 + TF 81 -13.4 -3.65426 | overlap 227730 227729 227780 227781 ACCTCACCGCCGACA CGGCATTTCAGCAGGCAAAGTC CGAG GACACGCCCTGCTGGAATGCCG TTTCGGCGTTTGTGG MSMEG_0201 228231 - 227725 - | hypothetical protein MSMEG_0202 227950 - 229272 + | IS1096, tnpA protein MSMEG_0203 229981 - 229280 - | IS1096, tnpR protein TERM 75 230275 - 230251 - g 70 -9.1 -3.90744 | overlap 230252 GGCGCGTGCAAAGAA GGCGGCGACGC TCA GCGCCGCTGCG ATGACGGCCACAGCC TERM 76 231666 - 231624 - g 74 -12.8 -3.65199 | gap 1 AATTGCCCACGCAAA CCACCGATGTC-GCAAGCC TTCTCG GGCTTCCCGACGTCGGTGG TGCGGTGTCGAACGT MSMEG_0204 230210 - 232255 + | hypothetical protein TERM 77 232273 - 232319 + T 91 -16.7 -3.55444 | opp_overlap 232273 ACACGGTTTCCGAAA CGACATTCCAGCAGGGAAG GTGCGAGTG CACCCCTGCTGGAATGTCG TTTCGCCCATGGGGA TERM 78 232319 - 232273 - T 100 -18.9 -3.53563 | opp_overlap 232273 ACACGGTTTCCGAAA CGACATTCCAGCAGGGAAG GTGCGAGTG CACCCCTGCTGGAATGTCG TTTCGCCCATGGGGA MSMEG_0205 232667 - 232344 - | tetracenomycin polyketide synthesis hydroxylase TcmH MSMEG_0207 232728 - 233168 + | MarR-family protein transcriptional regulator MSMEG_0206 235296 - 233161 - | acyltransferase 3 MSMEG_0208 235408 - 235785 + | ribonuclease MSMEG_0209 235782 - 236060 + | ribonuclease inhibitor MSMEG_0210 237149 - 236061 - | LprO protein MSMEG_0211 239607 - 237244 - | ABC transporter, ATP-binding protein MSMEG_0212 240026 - 239607 - | lyase MSMEG_0213 240471 - 240031 - | transcriptional regulator MSMEG_0214 241771 - 240488 - | L-sorbosone dehydrogenase TERM 79 241194 - 241218 + g 74 -15.7 -3.09878 | opp_overlap 241192 241190 241187 ATCGAGAAGTACACG GCGCCGTCGTC GCC GACGACGACGC TCTTGAGTGCGTGGG MSMEG_0215 242465 - 241749 - | YhhW family protein MSMEG_0216 242603 - 243397 + | 3-hydroxyacyl-CoA dehydrogenase TERM 80 243413 - 243452 + T 100 -20.2 -3.26834 | opp_overlap 243419, overlap 243419 TCTCCGCGAGCAGAC GTAAAACTGCCCCTTTCC ACGC GGAAAGGGGCAGTTCTGC TTCGTGGTCTGCTTT TERM 81 243446 - 243419 - T 100 -20 -4.24948 | opp_overlap 243419 243413 CGAGCAGACGTAAAA CTGCCCCTTTCC ACGC GGAAAGGGGCAG TTCTGCTTCGTGGTC TERM 82 243419 - 243446 + T 100 -20 -3.54743 | opp_overlap 243419, overlap 243413 CGAGCAGACGTAAAA CTGCCCCTTTCC ACGC GGAAAGGGGCAG TTCTGCTTCGTGGTC MSMEG_0217 244601 - 243477 - | alcohol dehydrogenase B MSMEG_0218 244773 - 245267 + | 3-demethylubiquinone-9 3-methyltransferase MSMEG_0219 246293 - 245271 - | RNA polymerase factor sigma-70 MSMEG_0220 246357 - 247199 + | monoglyceride lipase MSMEG_0221 247214 - 248173 + | secreted protein MSMEG_0222 248214 - 248957 + | hypothetical protein MSMEG_0223 248954 - 249436 + | hypothetical protein MSMEG_0224 249456 - 250112 + | O-methyltransferase MdmC MSMEG_0225 253017 - 250120 - | MmpL4 protein MSMEG_0226 253442 - 253014 - | MmpS5 protein MSMEG_0227 253688 - 254257 + | transcriptional regulator, TetR family protein TERM 83 255716 - 255733 + G 71 -2.5 -4.56597 | GGCCTGATCGCCGAC CGGGCGG CAGG CAACCCG TTTTTCACGCAGGAG TERM 84 255930 - 255896 - g 71 -9.8 -3.76839 | overlap 255900 GAAGTGGAAGCCAAA CGGACGCTGAGCGCGG CGG CCGTGATCGGCCTCCG GTTCGGGCCGGACAT MSMEG_0228 254330 - 257482 + | adenylate and guanylate cyclase catalytic domain-containing protein ilvD 259288 - 257573 - | dihydroxy-acid dehydratase TERM 85 257657 - 257689 + g 82 -14.1 -3.71848 | opp_overlap 257634 GTACCGCGGCGGCAG GGGTTCGAAGCCGGC CTT GCGGGCCTCGAACTC TTCTTCGTCGACGAG MSMEG_0230 259367 - 259672 + | hypothetical protein MSMEG_0231 259990 - 259691 - | hypothetical protein TERM 86 260092 - 260130 + G 70 -12.5 -3.2794 | overlap 260091 AGCCCGTGGACCGTG CG-CGTCGCCGCGCAGC TGACGGT GCT-CGCGGCGGCGGCG TTCATCTACGTCACC TERM 87 260655 - 260692 + G 82 -16.2 -3.38291 | CGCCGAGCGTGCCCG GGCCGGGTCCGCGGGC AGGCCC GTCCACGGACGCGGCC TTCTCACGTTGTCGC MSMEG_0232 260053 - 261282 + | sugar transporter family protein MSMEG_0233 261440 - 262480 + | lipoprotein Lpps TERM 88 262493 - 262529 + T 100 -31.1 -3.33162 | opp_overlap 262497 262500, overlap 262497 262500 TAGCCGGACGTCATA CGAAGAACCCCCGCAGC CCG GCTGCGGGGGTTCTTCG TTGTCGGATCCGATC TERM 89 262497 - 262525 + T 100 -24.7 -3.45118 | opp_overlap 262497 262500, overlap 262493 262500 CGGACGTCATACGAA GAACCCCCGCAGC CCG GCTGCGGGGGTTC TTCGTTGTCGGATCC TERM 90 262525 - 262497 - T 100 -24.7 -3.27022 | opp_overlap 262497 262493 262500, overlap 262500 CGGACGTCATACGAA GAACCCCCGCAGC CCG GCTGCGGGGGTTC TTCGTTGTCGGATCC TERM 91 262500 - 262522 + T 100 -20.6 -3.8591 | opp_overlap 262497 262500, overlap 262497 262493 ACGTCATACGAAGAA CCCCCGCAGC CCG GCTGCGGGGG TTCTTCGTTGTCGGA TERM 92 262522 - 262500 - T 100 -20.6 -3.77588 | opp_overlap 262500 262497 262493, overlap 262497 ACGTCATACGAAGAA CCCCCGCAGC CCG GCTGCGGGGG TTCTTCGTTGTCGGA MSMEG_0234 264543 - 262543 - | metallopeptidase MSMEG_0235 264607 - 265227 + | hypothetical protein MSMEG_0236 265224 - 265913 + | putative transmembrane protein TERM 93 266523 - 266511 - g 71 -10.5 -3.75817 | overlap 266509 CTCCGACAACAAACA CGGCG CGA CGCCG ACCTGGAAGAAAACG MSMEG_0237 266047 - 267453 + | ISMsm3, transposase MSMEG_0238 268102 - 267632 - | O-acetylhomoserine/O-acetylserine sulfhydrylase MSMEG_0239 269390 - 268095 - | O-acetylhomoserine/O-acetylserine sulfhydrylase MSMEG_0240 270074 - 269466 - | hypothetical protein MSMEG_0241 272941 - 270077 - | MmpL11 protein TERM 94 270708 - 270735 + g 72 -14.2 -3.21924 | gap 1, overlap 270706 ACCATGGTGCGCAGG TCGCTGCCGCTCG GTC CGAGCG-CGGCGA TGTTGTCGGGGATGA TERM 95 271698 - 271725 + g 81 -18.4 -2.80935 | CCCGGACCGAGCGCG TCCGCGGCCGCG TTGA CGCCGCCGCGGA TCTCGTGGGTGGGAT MSMEG_0242 273263 - 273844 + | hypothetical protein TERM 96 273919 - 273953 + F 71 -4.3 -4.57569 | gap 1, opp_overlap 273928 GACACTGGTTTGAGT GCAAGGCAAGAAACTG GACA CAGATTCT-GCTTAGC TTTTTACGCCGATAA MSMEG_0243 274044 - 274394 + | hypothetical protein MSMEG_0244 274400 - 275140 + | two component response transcriptional regulatory protein prra MSMEG_0246 275161 - 276513 + | sensor-type histidine kinase PrrB MSMEG_0245 276869 - 276501 - | transmembrane protein TERM 97 276754 - 276744 - G 72 -8.2 -3.96148 | overlap 276745 CGTGCCGACCAGAAA CGGC CAG GCCG TCTCGGCGACGCCGG MSMEG_0247 278070 - 276856 - | secreted peptidase TERM 98 277427 - 277439 + g 77 -3.4 -4.7629 | TCGATGGCGAATCGC TCTG CGGCC CAGA TTTTTCCGTTGATCG MSMEG_0248 279161 - 278070 - | hypothetical protein MSMEG_0249 279235 - 280374 + | integral membrane protein MSMEG_0250 283423 - 280382 - | membrane protein, MmpL family protein TERM 99 280802 - 280857 + g 74 -14.7 -3.03159 | gap 3 CGCCGGGCCACCCGG GCGCGGCGCACGCTCGGT-CGGCGCGGC CGC GCTGC-CTGCGCCGC-CGTGCACCGCGC TGTTGACCGCATTGC MSMEG_0251 284216 - 283518 - | hypothetical protein trmB 284941 - 284219 - | tRNA (guanine-N(7))-methyltransferase MSMEG_0253 285164 - 286186 + | hypothetical protein MSMEG_0254 286183 - 287649 + | hypothetical protein MSMEG_0255 287807 - 289633 + | phosphoenolpyruvate carboxykinase MSMEG_0256 289749 - 290651 + | hypothetical protein MSMEG_0257 290685 - 292199 + | acyl-CoA synthetase MSMEG_0259 292201 - 293106 + | enoyl-CoA hydratase/isomerase MSMEG_0258 293794 - 293084 - | oxidoreductase, short chain dehydrogenase/reductase family protein TERM 100 294160 - 294217 + G 100 -22.7 -3.15861 | gap 1 GCACCTGTTCGCGGT CGCCGGGCTCACCCCG-CGCGCACGG CTCGCCC CCGTGCCCGACCGGGTGGACCCGGCG TTGATGCGGCTCATG MSMEG_0260 293906 - 294721 + | DNA-binding protein MSMEG_0261 294737 - 295729 + | p40 protein MSMEG_0262 295766 - 296872 + | hypothetical protein MSMEG_0263 296866 - 298137 + | amidohydrolase 3 MSMEG_0264 298158 - 299276 + | transmembrane transport protein MSMEG_0266 299314 - 300771 + | arginine decarboxylase MSMEG_0265 301390 - 300761 - | uracil DNA glycosylase superfamily protein TERM 101 301342 - 301307 - G 76 -13.9 -3.48276 | GGCGTCGCGATACAA CCCGCAGCCTCGGCA TTCGCC TGCCGCGGCAGCGAG TTCGGCCAGGTCCGC TERM 102 301396 - 301408 + H 81 -9.1 -4.21275 | CACCCGCCATGTCAC GTGGG GTA CCCAC TTTTGCGTCGATTGC TERM 103 301904 - 301935 + G 71 -10.8 -3.61178 | gap 1 CTCCCCAAATACGGT CTGGCCGAGGCGATC GAC GA-CGCCGTGGCCGG TTTGCGCTGGCTGCA MSMEG_0267 301478 - 302494 + | esterase MSMEG_0268 303274 - 302495 - | transcriptional regulator, GntR family protein TERM 104 302558 - 302575 + g 78 -14.1 -3.57144 | GCCGCTGTTCGACGC GGCCGCG ATAC CGCGGCC TTTCGCGGTCACCGC MSMEG_0269 304103 - 303324 - | short chain dehydrogenase MSMEG_0270 305144 - 304140 - | aminoglycoside phosphotransferase MSMEG_0271 305800 - 305144 - | hypothetical protein MSMEG_0272 306084 - 305803 - | propanediol utilization protein PduA MSMEG_0273 306360 - 306097 - | ethanolamine utilization protein EutN MSMEG_0274 306898 - 306377 - | hypothetical protein MSMEG_0275 307509 - 306901 - | microcompartments protein family protein MSMEG_0276 309101 - 307518 - | aldehyde-alcohol dehydrogenase TERM 105 308674 - 308649 - G 85 -18.3 -3.01712 | GGCCTCGGCCGAACA CCGCGCCGCAC GCGG GTGCGGCGCGA CCACCACGGCGTTGC MSMEG_0277 310378 - 309098 - | putative aminotransferase MSMEG_0279 310563 - 312098 + | amino acid permease MSMEG_0278 312322 - 312095 - | hypothetical protein TERM 106 312141 - 312197 + g 80 -17.4 -2.90901 | gap 2, overlap 312142 ACGACCGTGACGTCA TGC-GGT-TCGTCCTCGCGTGGGCTCCC TTC GGGGGTCCACGCGAGGACGACGTCTGGG TCTCGTTCGGCGTGT MSMEG_0280 313258 - 312359 - | alpha/beta hydrolase fold TERM 107 313864 - 313822 - g 83 -14.6 -3.64703 | overlap 313823 GGCCCCTGACCCAAA CCCCATCGCCGACGCCGCGG TGG CCGCCGCGGCGTCGGTGGGC ATCCCGGCGTTCGAC TERM 108 313863 - 313823 - g 78 -18.1 -2.78679 | overlap 313822 GCCCCTGACCCAAAC CCCATCGCCGACGCCGCGG TGG CCGCCGCGGCGTCGGTGGG CATCCCGGCGTTCGA MSMEG_0281 313349 - 314920 + | choline dehydrogenase MSMEG_0282 314913 - 315233 + | hypothetical protein TERM 109 315524 - 315564 + G 82 -15.5 -3.53091 | CATCCTGGTGCACGT GGCCGGTGGATCCTCCT CGCCGGC AGGAGGATTCGCCGCCC TTTCCGAGCAGGACT MSMEG_0283 315285 - 316055 + | short chain dehydrogenase MSMEG_0284 316854 - 316060 - | ribosyldihydronicotinamide dehydrogenase (quinone) MSMEG_0285 317453 - 316851 - | transcriptional regulator TetR family protein MSMEG_0286 318320 - 317634 - | GntR-family protein transcriptional regulator MSMEG_0287 318844 - 318317 - | hypothetical protein TERM 110 319857 - 319877 + G 77 -15.5 -3.14132 | GAGCCTTACACCTAC CTCCTCGAC GTG GTCGAGGAG TTCCTGGGACGCAAG MSMEG_0288 318960 - 320069 + | FAD dependent oxidoreductase, putative TERM 111 321109 - 321121 + G 79 -4.7 -4.77036 | CGCGCAGGTCCATGC CGACG CGC CGCCG TTTTTGGTCGTGCAC MSMEG_0289 320261 - 321361 + | alpha/beta hydrolase fold family protein MSMEG_0290 321386 - 322804 + | acyltransferase, ws/dgat/mgat subfamily protein MSMEG_0291 323652 - 322807 - | dioxygenase, TauD/TfdA family protein TERM 112 323597 - 323628 + g 85 -11.5 -4.2704 | opp_overlap 323595, overlap 323617 CGTTCGGAATCGATG CCGACCACCTCGG CACCCA CCGAGGCGGTCAG TTTGTTGATGGTCAG TERM 113 323703 - 323748 + r 70 -13.9 -2.62184 | gap 1, overlap 323712 323713 GTGGGCTCCCCGGTG CGCACCATGACGGCGTCGGCCG CGT CGACCGGCGCCGGT-TGGTGCA TGATCTCGACCGCCA MSMEG_0292 324010 - 323681 - | hypothetical protein TERM 114 323712 - 323740 + g 72 -13.7 -3.1994 | overlap 323703 323713 CCGGTGCGCACCATG ACGGCGTCGGCCG CGT CGACCGGCGCCGG TTGGTGCATGATCTC TERM 115 323713 - 323739 + g 77 -17.2 -2.51642 | overlap 323712 323703 CGGTGCGCACCATGA CGGCGTCGGCCG CGT CGACCGGCGCCG GTTGGTGCATGATCT MSMEG_0293 325277 - 324012 - | Rieske (2Fe-2S) domain-containing protein fabG 326060 - 325317 - | 3-oxoacyl-(acyl-carrier-protein) reductase MSMEG_0295 327133 - 326057 - | oxidoreductase, FAD-binding MSMEG_0296 327647 - 327192 - | transcriptional regulator, MarR family protein TERM 116 327370 - 327335 - G 73 -12.7 -3.53444 | gap 1, opp_overlap 327343, overlap 327307 327336 CGATGGCGTCGGAAA CCACCGAAGAGGCGAC CGCGC GCC-CCTCTTCGGTGA GGAACACCTGCAGGA MSMEG_0297 328937 - 327678 - | amidohydrolase MSMEG_0298 329275 - 328934 - | hypothetical protein MSMEG_0299 330544 - 329279 - | Rieske (2Fe-2S) domain-containing protein MSMEG_0300 330792 - 331799 + | amidohydrolase family protein MSMEG_0301 333170 - 331803 - | oxidoreductase, FAD-binding MSMEG_0303 333272 - 334264 + | alcohol dehydrogenase, zinc-containing MSMEG_0302 335472 - 334261 - | peptidase, S9A/B/C families MSMEG_0304 337096 - 335465 - | acyl-CoA synthetase MSMEG_0305 337911 - 337102 - | acyltransferase domain-containing protein TERM 117 337548 - 337588 + g 70 -15.3 -2.71144 | opp_overlap 337545 337548, overlap 337554 CACCCGGGAACACGA CGACGACGCCGCCGGAGCG CAG CGCCTCGTCGGCGTTCTCG TGGTTGGCCCGGATG TERM 118 337554 - 337582 + g 76 -13.7 -3.47227 | opp_overlap 337548 337545, overlap 337548 GGAACACGACGACGA CGCCGCCGGAGCG CAG CGCCTCGTCGGCG TTCTCGTGGTTGGCC MSMEG_0306 337990 - 338826 + | arylamine N-acetyltransferase TERM 119 338862 - 338850 - f 75 -3.4 -4.76075 | ATCACAGCAAGAAAA GTCA TGTCC TGAC CCCGGCGCGCCGACC MSMEG_0307 338897 - 339805 + | transcriptional regulator, AraC family protein MSMEG_0308 339809 - 340336 + | dihydrofolate reductase TERM 120 340398 - 340353 - T 100 -21.3 -3.01712 | opp_overlap 340355 340362 340397, overlap 340355 340362 TCCCCCTCGCGAACA GACGCAAAACTGCCCAATTCC GTTG GGAAGAGGGCAGTTTCGCGTC TGCTCGGCAGGATTA TERM 121 340355 - 340396 + T 78 -15.9 -2.78463 | opp_overlap 340353 340355 340362, overlap 340362 CCCCTCGCGAACAGA CGCAAAACTGCCCAATTCC GTTG GGAAGAGGGCAGTTTCGCG TCTGCTCGGCAGGAT TERM 122 340396 - 340355 - T 89 -18.1 -3.06696 | opp_overlap 340355 340362, overlap 340353 340362 CCCCTCGCGAACAGA CGCAAAACTGCCCAATTCC GTTG GGAAGAGGGCAGTTTCGCG TCTGCTCGGCAGGAT TERM 123 340389 - 340362 - T 81 -9.8 -4.28375 | opp_overlap 340355 340362, overlap 340355 340353 CGAACAGACGCAAAA CTGCCCAATTCC GTTG GGAAGAGGGCAG TTTCGCGTCTGCTCG MSMEG_0309 341904 - 340411 - | aldehyde dehydrogenase family protein MSMEG_0311 342748 - 343923 + | glycosyltransferase eda 344559 - 343930 - | 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase edd 346385 - 344556 - | phosphogluconate dehydratase zwf 347869 - 346382 - | glucose-6-phosphate 1-dehydrogenase TERM 124 346674 - 346654 - G 73 -9.6 -3.91084 | opp_overlap 346671, overlap 346655 TGAGCGCCAACGAAA CCGGCCGC AGACG GCCGCCGG AACCGGGTTCCTTCG MSMEG_0316 348060 - 349247 + | putative NagC regulator MSMEG_0315 350844 - 349207 - | transmembrane protein TERM 125 349775 - 349755 - G 72 -13.9 -3.17325 | overlap 349741 349753 349751 349756 ACGCGGCACAACACA CCGCGGCGG CCG CGGCCGCGG GTATCCGCAACCGCC MSMEG_0317 352070 - 350874 - | hypothetical protein MSMEG_0319 352236 - 353429 + | acyltransferase MSMEG_0318 354879 - 353392 - | AMP-dependent synthetase and ligase MSMEG_0320 355858 - 354881 - | putative phosphotriesterase MSMEG_0321 358708 - 355916 - | transcriptional regulator TERM 126 359202 - 359167 - R 86 -14.8 -3.524 | gap 2, overlap 359168 TACCCATGGAGACAA CGCGACGCCCCGGCGG TGAGAT CCGCCGGGG-GTCG-G ACACTGCTGTGGACG TERM 127 359202 - 359168 - R 75 -15 -2.71119 | gap 1, overlap 359167 ACCCATGGAGACAAC GCGACGCCCCGGCGG TGAGAT CCGCCGGGG-GTCGG ACACTGCTGTGGACG MSMEG_0323 360470 - 359235 - | acyl-CoA dehydrogenase, short-chain specific, putative MSMEG_0324 360723 - 361178 + | hypothetical protein MSMEG_0325 361191 - 361703 + | hypothetical protein MSMEG_0326 361710 - 363317 + | AMP-dependent synthetase and ligase MSMEG_0327 363333 - 364835 + | aldehyde dehydrogenase MSMEG_0328 364857 - 365306 + | hypothetical protein MSMEG_0329 365303 - 365797 + | FMN oxidoreductase TERM 128 365810 - 365837 + T 80 -14.8 -3.05816 | opp_overlap 365765 365764, overlap 365830 TGATCAGGTGCCCTG CAGCGCCCAGGC GATG GCTTGGGCGCGG TTGACTGCGCCGTAC MSMEG_0330 366985 - 365798 - | transcriptional regulator, LuxR family protein TERM 129 366205 - 366233 + g 70 -13.1 -3.31792 | opp_overlap 366205 366207 CGAACGCCCACAGCA CATCCCGGTCGGC TTC GTCGACCGGAGTG TTCTCCGGGTAGTGA MSMEG_0331 368034 - 366982 - | transcriptional regulator, LuxR family protein TERM 130 368117 - 368154 + H 71 -12.2 -3.1855 | opp_overlap 368129 TCAGTGATCTGCCTT TTCGCT-CATGAACCGGC GTCG GCCGG-TCATGGAGCGGA TTCAGTGTTGACAAC TERM 131 368787 - 368819 + G 74 -14.1 -3.34344 | CTTGCCGCGCAGGCC GCCGGTGCCGACCTG GCC TACGTCGGCACCCGC TTCATTGCCACATCG MSMEG_0332 368223 - 369158 + | 2-nitropropane dioxygenase, NPD MSMEG_0333 369275 - 370873 + | carboxyl transferase domain-containing protein MSMEG_0334 370879 - 372888 + | acetyl-/propionyl-coenzyme A carboxylase alpha chain MSMEG_0335 372885 - 373643 + | enoyl-CoA hydratase/isomerase MSMEG_0336 373643 - 374437 + | hypothetical protein MSMEG_0337 374434 - 376188 + | hypothetical protein MSMEG_0338 376204 - 377340 + | acyl-CoA dehydrogenase fadE12 MSMEG_0339 377377 - 378393 + | FMN-dependent monooxygenase MSMEG_0340 378402 - 379154 + | enoyl-CoA hydratase/isomerase family protein MSMEG_0341 380174 - 379158 - | hypothetical protein MSMEG_0342 381053 - 380208 - | hypothetical protein MSMEG_0343 381809 - 381177 - | TetR-family protein transcriptional regulator MSMEG_0344 382067 - 382837 + | hypothetical protein MSMEG_0345 382881 - 383699 + | hypothetical protein TERM 132 384761 - 384737 - g 82 -14.9 -3.53012 | CGGCCCGGGGGGAAA GCCGGGCTGCG GCT CGCTGCCCGAC GTCGCGAAGAACTTC MSMEG_0346 383703 - 385127 + | virulence factor MSMEG_0347 385157 - 386185 + | virulence factor Mce family protein MSMEG_0348 386170 - 387498 + | mce-family protein mce3c MSMEG_0349 387495 - 388796 + | virulence factor mce family protein MSMEG_0350 388793 - 389932 + | virulence factor Mce family protein MSMEG_0351 389934 - 391421 + | virulence factor mce family protein MSMEG_0352 391385 - 391987 + | hypothetical protein MSMEG_0353 392047 - 392592 + | hypothetical protein MSMEG_0354 392616 - 392957 + | hypothetical protein MSMEG_0355 392954 - 393448 + | hypothetical protein MSMEG_0356 393897 - 393601 - | acetyltransferase TERM 133 393861 - 393838 - G 80 -18.2 -2.9356 | opp_overlap 393830 393856 ACCGATATCGACATA GGCGAGCACG CCTG CGTGCTCGCC GTCGACGGTGAGTTC MSMEG_0357 394013 - 395614 + | transmembrane transport protein MSMEG_0358 395654 - 396616 + | ribonucleotide-diphosphate reductase subunit beta TERM 134 396632 - 396676 + T 88 -15.8 -3.30771 | opp_overlap 396624 396630 396629, overlap 396633 ACAGAACCGAAATGC TCGCTGTGGTGTCGGCGA ACCCCTCCG TCGCCGACACCACAGCCC TTGTGCACGCTGTGC TERM 135 396633 - 396675 + T 89 -19.3 -2.58249 | opp_overlap 396624 396630 396629, overlap 396632 CAGAACCGAAATGCT CGCTGTGGTGTCGGCGA ACCCCTCCG TCGCCGACACCACAGCC CTTGTGCACGCTGTG MSMEG_0359 401135 - 396891 - | hypothetical protein MSMEG_0360 401343 - 401170 - | hypothetical protein MSMEG_0361 401448 - 402611 + | glycosyl hydrolase family protein 3 MSMEG_0362 403786 - 402623 - | amidohydrolase 2 MSMEG_0363 403864 - 404502 + | TetR-family protein regulatory protein MSMEG_0364 404569 - 404868 + | hypothetical protein MSMEG_0365 404871 - 406751 + | hypothetical protein MSMEG_0366 406748 - 407275 + | hypothetical protein MSMEG_0367 408355 - 407282 - | O-demethylpuromycin-O-methyltransferase MSMEG_0368 408516 - 409982 + | hypothetical protein MSMEG_0369 409979 - 410701 + | hypothetical protein MSMEG_0370 410691 - 414047 + | hypothetical protein MSMEG_0371 414920 - 414063 - | MaoC like domain-containing protein fabG 416274 - 414922 - | 3-ketoacyl-(acyl-carrier-protein) reductase TERM 136 417592 - 417573 - g 70 -3.4 -4.51812 | opp_overlap 417583, overlap 417574 417575 417577 GCGGAGAAGAAGAAA TCCACCGG CCGG CCGGTGCG CGGTCTGATCTCGAT MSMEG_0373 416355 - 417653 + | acetyl-CoA acetyltransferase TERM 137 417794 - 417737 - T 73 -14.1 -2.87132 | opp_overlap 417741, overlap 417740 CGGGGGGTCGATAGA CGAGTAGCTCCGTGTTGCCGTCTGACC CCCC GACCCGACGGCAACACGGGGCCATTTA CTTCGAGACCCGCAT TERM 138 417791 - 417740 - T 87 -18 -2.69151 | opp_overlap 417741, overlap 417737 GGGGTCGATAGACGA GTAGCTCCGTGTTGCCGTCTGACC CCCC GACCCGACGGCAACACGGGGCCAT TTACTTCGAGACCCG TERM 139 417741 - 417790 + T 93 -17.1 -3.90112 | opp_overlap 417740 417737 GGGTCGATAGACGAG TAGCTCCGTGTTGCCGTCTGACC CCCC GACCCGACGGCAACACGGGGCCA TTTACTTCGAGACCC MSMEG_0374 420065 - 418197 - | glycolate oxidase subunit MSMEG_0375 421805 - 420213 - | phospholipase D family protein TERM 140 420438 - 420450 + g 75 -4.7 -4.62069 | overlap 420393 420391 GCTCGGGTCGATCAG CGCCG CGT CGTCG TTTTTCCCGTCGAGG MSMEG_0376 421882 - 422928 + | transcriptional regulator, AraC family protein MSMEG_0377 422996 - 423736 + | nitrile hydratase nthA 423733 - 424353 + | nitrile hydratase, alpha subunit MSMEG_0379 424350 - 424631 + | nitrile hydratase activator P14k MSMEG_0380 425344 - 425763 + | MmpS4 protein MSMEG_0381 425760 - 428642 + | Mmp14a protein MSMEG_0382 428652 - 431636 + | putative transport protein TERM 141 431683 - 431645 - T 100 -22.5 -4.15565 | gap 1, opp_overlap 431646 431647, overlap 431646 CCGATGACGCGAAAA CGGGCTGCGGCGCGCTGA TAGT TCGGCGCGCCGCAGCC-G TTTCTACGTGCTGTG TERM 142 431646 - 431683 + T 100 -24.9 -3.94409 | opp_overlap 431645 431646, overlap 431647 CGATGACGCGAAAAC GGGCTGCGGCGCGCTGA TAGT TCGGCGCGCCGCAGCCG TTTCTACGTGCTGTG TERM 143 431683 - 431646 - T 100 -22.7 -3.09018 | opp_overlap 431646 431647, overlap 431645 CGATGACGCGAAAAC GGGCTGCGGCGCGCTGA TAGT TCGGCGCGCCGCAGCCG TTTCTACGTGCTGTG TERM 144 431647 - 431682 + T 100 -28.4 -2.96164 | opp_overlap 431645 431646, overlap 431646 GATGACGCGAAAACG GGCTGCGGCGCGCTGA TAGT TCGGCGCGCCGCAGCC GTTTCTACGTGCTGT MSMEG_0383 432045 - 431707 - | hypothetical protein rfbA 433095 - 432229 - | glucose-1-phosphate thymidylyltransferase MSMEG_0385 433614 - 434870 + | glycosyl transferase MSMEG_0386 434928 - 436061 + | NAD dependent epimerase/dehydratase family protein MSMEG_0387 436310 - 437044 + | Rmt2 protein tylF 437374 - 438096 + | macrocin-O-methyltransferase TERM 145 438686 - 438648 - g 85 -16.1 -3.61398 | gap 1, overlap 438652 438654 TTGGCGGTTGAACAA GAAAGT-CGAGGACGCGC AGCG GCGCGACCTCGGACTTCC GAAAGCGACTGGCCC TERM 146 438682 - 438652 - g 100 -13.3 -4.44667 | gap 1, overlap 438648 438654 CGGTTGAACAAGAAA GT-CGAGGACGCGC AGCG GCGCGACCTCGGAC TTCCGAAAGCGACTG TERM 147 438679 - 438654 - g 73 -16.1 -2.55309 | overlap 438652 438648 GTTGAACAAGAAAGT CGAGGACGCGC AGCG GCGCGACCTCG GACTTCCGAAAGCGA MSMEG_0389 438130 - 439398 + | glycosyl transferase MSMEG_0390 439605 - 440687 + | putative acyltransferase TERM 148 441077 - 441126 + G 72 -5.1 -4.4009 | gap 3 CAGTGGCATTGGCGG GTGCACGTCGGT-TTGTGGGCAGC CGCCA GC-GCCAGCAAGATCGACG-GCGC TTTTGTCGAGTGCGG MSMEG_0391 440861 - 441649 + | Rmt3 protein MSMEG_0392 443201 - 441687 - | glycosyl transferase TERM 149 442272 - 442284 + gF 70 -4.7 -4.3467 | overlap 442262 GAGCGCGCCCGTGAA CGGCC GCT GGCGG TTTTGATCTGCCCAT MSMEG_0393 443164 - 443967 + | Fmt protein MSMEG_0394 444075 - 444329 + | hypothetical protein TERM 150 444400 - 444413 + F 75 -6.7 -4.42788 | opp_overlap 444400 TTCCTGACAAAAAAA TGTCG TGTG CGACA TTTTCTGAAATTCGG TERM 151 444413 - 444400 - f 100 -6.7 -5.60993 | opp_overlap 444400 TTCCTGACAAAAAAA TGTCG TGTG CGACA TTTTCTGAAATTCGG MSMEG_0395 444662 - 444796 + | hypothetical protein MSMEG_0396 445585 - 445187 - | hypothetical protein MSMEG_0397 445304 - 446626 + | IS1096, tnpA protein MSMEG_0398 447335 - 446634 - | IS1096, tnpR protein TERM 152 447822 - 447802 - g 76 -2.5 -4.67982 | GTTTATTGAACAAAA TTGGACCGA TAT TCGACCGAA GAGCCTGCGCGAGAG MSMEG_0399 447638 - 447868 + | hypothetical protein TERM 153 449017 - 449037 + G 76 -2.4 -4.72497 | opp_overlap 449012 449015 CGTACACGAACCACG GCCCCATG GGGCA CTTCGGGC TTTTCTTCATCGGTG MSMEG_0400 447897 - 455186 + | peptide synthetase MSMEG_0401 455186 - 458191 + | putative non-ribosomal peptide synthase MSMEG_0402 458188 - 465867 + | linear gramicidin synthetase subunit D TERM 154 465982 - 465992 + G 72 -5.4 -4.48823 | overlap 465973 465981 CCCCCGCCCGGTGCC CAAC CTG GTTG TTTTCTGGGTTGGTT MSMEG_0403 465884 - 466702 + | integral membrane protein MSMEG_0404 466804 - 467214 + | sigma associated protein MSMEG_0405 467223 - 468398 + | extra cytoplasmic sigma factor TERM 155 468410 - 468383 - T 100 -22.8 -3.7108 | opp_overlap 468383 468385 ACCGGGAGATGCAAA GAGGCTCCCGGG GTGA CCCGGGAGCCTC TTCGGTGAAGCGTTG TERM 156 468383 - 468410 + T 100 -22.8 -3.06133 | opp_overlap 468383, overlap 468385 ACCGGGAGATGCAAA GAGGCTCCCGGG GTGA CCCGGGAGCCTC TTCGGTGAAGCGTTG TERM 157 468385 - 468408 + T 93 -19.6 -3.08798 | opp_overlap 468383, overlap 468383 CGGGAGATGCAAAGA GGCTCCCGGG GTGA CCCGGGAGCC TCTTCGGTGAAGCGT MSMEG_0406 470276 - 468441 - | acyl-CoA-dehydrogenase MSMEG_0407 470514 - 471602 + | hypothetical protein TERM 158 471596 - 471619 + T 71 -13.9 -2.72144 | overlap 471595 CGAGGCGACCCGCTG GGCCTGAGC GTGGCG GCTCAGGCC GTTTCGGGCGCCTCG MSMEG_0408 482571 - 471613 - | type I modular polyketide synthase TERM 159 475921 - 475875 - G 78 -15.9 -3.01712 | gap 1, overlap 475838 475914 CGGCGTCGGCGAACA CGGCCAC-CATCCGGCCGCCTT CGGG AAGGCTGCCGAACATGCGGCCG CGCTCGGCCATCAGT TERM 160 482515 - 482470 - G 71 -11.3 -3.61398 | gap 3, opp_overlap 482483 CCCGTCCCGCAACAA CGCC-CA-GTATTCCTCGGCGC TCGCC GCGCCG-GGAAAACGTGCGGCG TAGCCGATGATTGCG TERM 161 483652 - 483666 + G 79 -7 -4.44245 | opp_overlap 483652 CGAATCGGCATGCAA CGCGGC CGG GGCGCG TTTTGTCGGTGGTCT MSMEG_0409 482813 - 484234 + | condensation domain-containing protein MSMEG_0410 484268 - 487276 + | MmpL protein TERM 162 488916 - 488885 - g 71 -10 -3.73783 | opp_overlap 488887, overlap 488882 CATCGAACTCAAGAA GCCGGCCGACCTCG ACGC CGAGGCCATCCGTC GGTTCGGCGAGGTCA MSMEG_0411 487386 - 489095 + | acyl-CoA synthetase MSMEG_0412 489157 - 490308 + | hypothetical protein MSMEG_0413 490990 - 490313 - | hypothetical protein MSMEG_0414 491026 - 492051 + | oxidoreductase, 2OG-Fe(II) oxygenase family protein MSMEG_0415 492065 - 492550 + | NADH-FMN oxidoreductase TERM 163 492575 - 492612 + T 72 -12.7 -3.16039 | gap 1, overlap 492606 GCGGCGAGCCTCGGG CTCGCCGCATG-ACCGGA ATG TCAGGGCCGTGCGGCGAG TTCCTCGCGGTACTT MSMEG_0416 492756 - 492595 - | hypothetical protein MSMEG_0417 493583 - 492834 - | fumarate reductase iron-sulfur subunit sdhA 495492 - 493585 - | succinate dehydrogenase flavoprotein subunit MSMEG_0419 496396 - 495575 - | integral membrane protein TERM 164 496476 - 496438 - R 91 -16.6 -3.53012 | GGCGTGGGCGTCAAA CGCCCACGGGCTCAGCGG TAT CCGCCGAGCCCCTCGTCG GCGACGTCCTGCCAG MSMEG_0420 496745 - 496449 - | hypothetical protein TERM 165 496513 - 496541 + g 78 -13.1 -3.73953 | opp_overlap 496494, overlap 496494 496491 496514 GTTCCGTACTGTGTG TCGGGAACCGGGA TCT TCTCGGTGCCCGG TTTCGTACGGGTGAT MSMEG_0421 496794 - 496940 + | hypothetical protein MSMEG_0422 497010 - 497777 + | transferase MSMEG_0423 497860 - 498360 + | hypothetical protein TERM 166 498403 - 498377 - T 100 -19.5 -4.19238 | opp_overlap 498377 CCCGGAACGCGAAAA CCGGTGGCACC ACGGG GGTGCCACCGG TTCTTTCGGATCCGG TERM 167 498377 - 498403 + T 100 -19.5 -3.9392 | opp_overlap 498377 CCCGGAACGCGAAAA CCGGTGGCACC ACGGG GGTGCCACCGG TTCTTTCGGATCCGG MSMEG_0424 498875 - 498438 - | Hsp20/alpha crystallin family protein MSMEG_0425 499888 - 498953 - | putative membrane protein DcsA TERM 168 499259 - 499208 - G 77 -15.1 -3.19192 | gap 3, overlap 499203 GGCCAGGTAACCGAA GGCGGCCCAC-TCGCCCGCGCCTGCC TGC GGC-GG-GCGGTCGACGACGGCCGCC GCGGTCAGCGCCACC MSMEG_0426 499923 - 501296 + | transcriptional regulator, GntR family protein nirB 501440 - 504019 + | nitrite reductase [NAD(P)H], large subunit MSMEG_0428 504016 - 504384 + | nitrite reductase [NAD(P)H] small subunit MSMEG_0429 504641 - 504399 - | putative ferric uptake regulator MSMEG_0430 505025 - 506392 + | ISMsm4, transposase MSMEG_0431 507502 - 506807 - | secreted protein MSMEG_0432 508656 - 507499 - | bifunctional uroporphyrinogen-III synthetase/response regulator domain-containing protein MSMEG_0433 510100 - 508691 - | nitrite extrusion protein MSMEG_0434 510841 - 510209 - | aminoglycoside 2'-N-acetyltransferase (AAC(2')-Id) TERM 169 510810 - 510786 - G 78 -17.1 -2.78596 | GAGGTGTGGATCAGA CGCGCGGTGTG GAT CGCACCGCGCG TGCGAGCCTCACTGA MSMEG_0435 511757 - 510873 - | allophanate hydrolase subunit 2 MSMEG_0436 512405 - 511773 - | allophanate hydrolase subunit 1 MSMEG_0437 513190 - 512510 - | hypothetical protein MSMEG_0438 514168 - 513215 - | periplasmic binding protein TERM 170 514152 - 514142 - G 70 -8.2 -3.87815 | GGTCACCGCCAGAAA CCCG CGT CGGG TCAGTGGTCTCGGCA MSMEG_0439 515320 - 514184 - | hypothetical protein MSMEG_0440 515415 - 515317 - | hypothetical protein MSMEG_0441 516199 - 515471 - | hypothetical protein TERM 171 515909 - 515868 - G 81 -12.9 -3.91897 | gap 1 CGGCGGATCCAGAAA CCTGC-GAGCCGGGGCTTCG GCC CGAAGCCCCAGCACGGCTCG TCGGCGTTGACCGCC MSMEG_0442 516811 - 516209 - | tetracycline repressor domain-containing protein TERM 172 516887 - 516875 - H 73 -6.3 -4.39329 | opp_overlap 516875 ACGCCACACAATAAA CGAAT CTC ATTCG TTTTAGGAGCATGAT TERM 173 517260 - 517237 - g 77 -3.6 -4.72272 | overlap 517238 TCGCTGTACGAAAAA GCCCCGGCCG CAGA CGGTCTGGGG TACAACACCGCCATC MSMEG_0443 516901 - 517893 + | hydrolase, carbon-nitrogen family protein MSMEG_0444 517901 - 518923 + | agmatine deiminase MSMEG_0445 518920 - 520557 + | amidohydrolase family protein MSMEG_0446 520569 - 521912 + | putrescine importer TERM 174 521923 - 521964 + T 100 -20.4 -2.95896 | gap 2, opp_overlap 521923, overlap 521924 521927 AGTAGTTGGCACACA GCGATCGAGCGGCCACGGTG TGTT CAC-GTGGCCGCTCGAT-GC GTTTGTGGGTGATCA TERM 175 521964 - 521923 - T 100 -20.4 -2.8805 | gap 2, opp_overlap 521923 521924 521927 AGTAGTTGGCACACA GCGATCGAGCGGCCACGGTG TGTT CAC-GTGGCCGCTCGAT-GC GTTTGTGGGTGATCA TERM 176 521924 - 521965 + T 100 -20.4 -3.93695 | opp_overlap 521923, overlap 521923 521927 GTAGTTGGCACACAG CG-ATCGAGCGGCCACGGTG TGTT CAC-GTGGCCGCTCGATGCG TTTGTGGGTGATCAG TERM 177 521927 - 521961 + T 100 -20.9 -2.71325 | gap 1, opp_overlap 521923, overlap 521923 521924 GTTGGCACACAGCGA TCGAGCGGCCACGGTG TGTT CAC-GTGGCCGCTCGA TGCGTTTGTGGGTGA MSMEG_0447 522406 - 521987 - | hypothetical protein TERM 178 522454 - 522428 - H 72 -11.6 -3.48276 | CTCCTGTTCATATAA GTCGCATCCGAT TTA ATCGGATACGTC AGACTCTAACACCGA TERM 179 522637 - 522616 - g 70 -12.3 -3.3506 | gap 1, overlap 522607 CGGAAAGGCCTACAA GCCGCTGCTG GAC CAGC-GCGGC ATCACCTACACGCAG MSMEG_0448 522533 - 522976 + | transcriptional regulator, MarR family protein MSMEG_0449 524988 - 522988 - | transporter, major facilitator family protein, putative TERM 180 524149 - 524113 - G 72 -14.4 -3.14881 | gap 1 GAAGCTTTCGAGGAA GACCTCGGCGGTCAGCG CGGT CGCAG-CCACCGAGGCC GCCGCCGCGAACAAC TERM 181 524576 - 524590 + g 73 -7.8 -4.13767 | ATGTTCATGATCACT GCTGTG TGG CGCAGC TTTTCGCGTGGGAAG MSMEG_0450 525004 - 525219 + | hypothetical protein MSMEG_0451 525571 - 525323 - | oxidoreductase, FAD-linked MSMEG_0452 527055 - 525610 - | inner membrane permease YgbN aroK 527604 - 527092 - | shikimate kinase MSMEG_0454 527730 - 528464 + | GntR-family protein transcriptional regulator TERM 182 529497 - 529481 - g 76 -7.9 -4.30719 | CCGTCCGACAAGAAA GCGATCG GTC CGGTCGC GTCGAAGGCCCAGTT MSMEG_0455 528536 - 529963 + | aldehyde dehydrogenase MSMEG_0456 532136 - 529995 - | DNA gyrase subunit A MSMEG_0457 534180 - 532147 - | DNA topoisomerase IV subunit B MSMEG_0458 534392 - 535687 + | two-component system sensor kinase MSMEG_0459 535697 - 536341 + | two-component system response regulator MSMEG_0460 537297 - 536353 - | alpha/beta hydrolase fold MSMEG_0461 537351 - 537965 + | CinZ protein MSMEG_0462 538102 - 538545 + | MmpS4 protein MSMEG_0463 538542 - 541427 + | MmpL4 protein TERM 183 541800 - 541770 - g 70 -8.3 -3.91911 | overlap 541792 GTGATCTGAACGAAA TCGCCGAGCGC-GCG GCA CGCAACGC-CGACGA GCGGATCACCTACGA MSMEG_0465 541484 - 542098 + | transcriptional regulator, TetR family protein MSMEG_0464 542898 - 542092 - | phosphomethylpyrimidine kinase MSMEG_0466 543024 - 543872 + | hypothetical protein MSMEG_0467 544481 - 543882 - | membrane transport protein TERM 184 544237 - 544210 - G 74 -12 -3.6682 | gap 1 GTCGACGGACGCAAA GCC-CGGCGTGCC GCG AGCACGCCGTAGC CGATGAGGAACGCTG TERM 185 544595 - 544572 - H 85 -12.6 -4.18197 | ACTGGGCATCGAAAA TATCTCTGAC TAAG GTCAGAGATA TGAGTGTCACGTCGG MSMEG_0469 544595 - 545467 + | transcriptional regulatory protein PadR- MSMEG_0468 546294 - 545434 - | integral membrane protein MSMEG_0471 546423 - 547280 + | transcriptional regulator LysR family protein MSMEG_0470 548872 - 547268 - | para-nitrobenzyl esterase TERM 186 548044 - 548024 - G 85 -18.3 -3.01712 | opp_overlap 548031 CCTGCTGTCCGAACA CCACGCGCC CTT GGCGCGTGG AAGCGAAACCGCGGC MSMEG_0472 549768 - 548983 - | putative lipoprotein TERM 187 549208 - 549194 - G 74 -11.4 -3.72576 | TCGGGCGCGACGAAA GTGCCC GCA GGGCAC GCCGGATCCTGGTTC MSMEG_0473 550350 - 551168 + | transcriptional regulator, LuxR family protein TERM 188 552149 - 552202 + G 78 -13.2 -3.53811 | gap 2 GAGGGTCCTCGATTC GATGGCAGGCCGGA-TCGC-CACCGG CGCT CTGTGGCGCGACTTCGGCCTGCCGTC TTTCGAACGGCTCCG MSMEG_0474 551334 - 553121 + | glucosamine--fructose-6-phosphate aminotransferase (isomerizing) MSMEG_0475 553181 - 554419 + | nucleotide-sugar dehydrogenase TERM 189 554923 - 554887 - g 82 -10.8 -4.11484 | gap 1, opp_overlap 554916, overlap 554877 GTCAACGGTGGAAAA CGCCGGGCGATGGCCAC GGGT ATGGCCGCCGCC-GACG ACGCCGATCTGTTCG MSMEG_0476 554422 - 555717 + | chitin synthase MSMEG_0478 555747 - 557249 + | secreted protein, putative MSMEG_0477 557977 - 557246 - | hypothetical protein MSMEG_0479 557252 - 557959 + | hypothetical protein MSMEG_0480 558654 - 557995 - | transcriptional regulator, GntR family protein MSMEG_0481 558749 - 560095 + | FAD dependent oxidoreductase TERM 190 560460 - 560470 + G 86 -6.8 -5.01497 | GGAAGGTGCGGTGCT CGAC GGA GTCG TTTTTCTCTCGTCGT MSMEG_0482 560092 - 561786 + | dihydroxy-acid dehydratase MSMEG_0483 561813 - 563186 + | shikimate transporter MSMEG_0484 564300 - 563191 - | formamidase MSMEG_0485 565826 - 564297 - | amidase TERM 191 564612 - 564642 + g 100 -22.6 -3.68351 | CGCGTCATCGTACGC GGCCCGCAACCGGG GCA CCAGGTTGCGGGCC TTTGCATAATGCGCG MSMEG_0486 566894 - 565863 - | putative ABC transporter, periplasmic protein MSMEG_0487 567740 - 566907 - | ABC transporter permease MSMEG_0488 568551 - 567784 - | ABC transporter ATP-binding protein MSMEG_0489 568865 - 570037 + | racemase TERM 192 570447 - 570433 - g 71 -11.4 -3.54424 | opp_overlap 570427 570424 GGCGAGTCGGCTAAA CTCGGG CTT CCCGAG GTGGCGCTGGGTTTG MSMEG_0490 570034 - 570816 + | enoyl-CoA hydratase TERM 193 570836 - 570792 - T 83 -15 -3.28712 | gap 1, opp_overlap 570826, overlap 570776 CGCCTTCGTCGAGAA GCGGCCCGCCAACTTCGGCCG CTGA CAGCCGAA-TCGGCGCCCCGC GCGTAGTCGATCAGT MSMEG_0491 571875 - 570847 - | transcriptional regulator, LacI family protein TERM 194 571369 - 571386 + g 79 -4.7 -4.77036 | overlap 571370 AGTGATCAGATGCTC TGTGGCG ATAC CGCCGCC TTTTTGGTCATCGAG MSMEG_0492 572553 - 571918 - | hypothetical protein TERM 195 572624 - 572587 - R 100 -20.8 -3.28712 | gap 1, opp_overlap 572593, overlap 572590 572593 GCGCTGGTGCCACAA CGAGAAGAGGGGCACCC ACGTG GGGTGCCCCTCTTCT-G ACGTCGGGGTGTCAG TERM 196 572622 - 572590 - R 100 -23.6 -2.82623 | opp_overlap 572593, overlap 572587 572593 CTGGTGCCACAACGA GAAGAGGGGCACCC ACGTG GGGTGCCCCTCTTC TGACGTCGGGGTGTC TERM 197 572593 - 572619 + r 100 -19.5 -3.32963 | opp_overlap 572590 572587 572593 GTGCCACAACGAGAA GAGGGGCACCC ACGTG GGGTGCCCCTC TTCTGACGTCGGGGT TERM 198 572619 - 572593 - R 100 -19.5 -3.56325 | opp_overlap 572593, overlap 572590 572587 GTGCCACAACGAGAA GAGGGGCACCC ACGTG GGGTGCCCCTC TTCTGACGTCGGGGT MSMEG_0493 572803 - 572636 - | hypothetical protein TERM 199 572961 - 572986 + r 100 -20.5 -3.54436 | opp_overlap 572961 TGGCAGAAACGAAAA GAGGGGCACCC GCAT GGGTGCCCCTC TTGTGTCGCTGTGTG TERM 200 572986 - 572961 - R 100 -20.5 -4.61873 | opp_overlap 572961 TGGCAGAAACGAAAA GAGGGGCACCC GCAT GGGTGCCCCTC TTGTGTCGCTGTGTG MSMEG_0494 573169 - 573002 - | hypothetical protein TERM 201 573653 - 573689 + r 81 -13 -3.62096 | gap 1 CGTGTTCGTCCTCGA CGAGTTG-GGCGGTGAC CGCG GTCACCGCCTCGGCGCG TTTCGCGTACTCCGC TERM 202 573770 - 573753 - R 72 -12.7 -3.14132 | CGCGGTGGTCAGCAA CTGCCCG GCTC CGGGCAG CACGACGCGGGCACC MSMEG_0496 575205 - 574846 - | coenzyme B12-dependent glycerol dehydrogenase small subunit MSMEG_0497 577466 - 575202 - | glycerol dehydratase large subunit TERM 203 577194 - 577230 + g 79 -15.2 -3.36515 | gap 1, overlap 577193 GTCCAGGTCGGTCAT CGCCATCGAACGCG-GC GCCT GCTCGTGGTCGATGGCG TATTTCACGATGAAC MSMEG_0498 577719 - 577603 - | hypothetical protein MSMEG_0499 577723 - 579150 + | amino acid permease-associated region TERM 204 579167 - 579153 - f 72 -11.4 -3.43288 | GAAATCCGAGTAGAA CGAGCG GAC CGCTCG CAAATCGCCGCAAAG TERM 205 579229 - 579172 - f 100 -19.8 -3.53811 | overlap 579173 579182 CGGACCGCTCGCAAA TCGCCGCAAAGGGCGCTGATACCGTC GGACCA GGCGGCGTCAGCGCCCTTCGCGGCTC CTCCGGCAACTGGGT TERM 206 579228 - 579173 - f 100 -23.3 -2.72144 | overlap 579172 579182 GGACCGCTCGCAAAT CGCCGCAAAGGGCGCTGATACCGTC GGACCA GGCGGCGTCAGCGCCCTTCGCGGCT CCTCCGGCAACTGGG TERM 207 579219 - 579182 - f 87 -14.8 -3.56594 | overlap 579173 579172 GCAAATCGCCGCAAA GGGCGCTGATACCGTC GGACCA GGCGGCGTCAGCGCCC TTCGCGGCTCCTCCG MSMEG_0500 579284 - 580351 + | regulator of polyketide synthase expression, putative MSMEG_0501 581107 - 580361 - | glucosamine-6-phosphate deaminase 1 MSMEG_0502 582480 - 581104 - | glucosidase MSMEG_0503 583253 - 582477 - | DeoR-family protein transcriptional regulator MSMEG_0504 583427 - 584413 + | carbohydrate kinase MSMEG_0505 584410 - 585780 + | sugar ABC transporter, substrate-binding protein, putative TERM 208 585850 - 585806 - f 100 -23.6 -2.73364 | gap 1 TCGTCAGCCGAACGA GCCCGCGTCCCCGCC-CGGTG ACAC CACCGCGGCGGGGAGGCGGGT CGCACAGCCGAAGCG MSMEG_0506 585885 - 586739 + | ABC transporter, permease protein MSMEG_0507 586736 - 587560 + | sugar ABC transporter, permease protein MSMEG_0508 587587 - 588657 + | glycerol-phosphate porter MSMEG_0509 589527 - 588742 - | transcriptional regulatory protein MSMEG_0510 589666 - 590988 + | D-tagatose-bisphosphate aldolase, class II, non-catalytic subunit MSMEG_0511 590985 - 592127 + | putative sugar isomerase, AgaS family protein MSMEG_0512 592124 - 593104 + | BadF/BadG/BcrA/BcrD ATPase family protein MSMEG_0513 593126 - 594091 + | integral membrane protein MSMEG_0514 594088 - 595401 + | alpha-galactosidase MSMEG_0515 595444 - 596721 + | sugar transporter sugar binding lipoprotein MSMEG_0516 596736 - 597647 + | sugar transport system TERM 209 598004 - 598040 + G 85 -11.6 -4.26076 | gap 2 AGCCTGGCGGGTTAT GCGTTCGCGCGGATCCGG TTC CTGGG-CCGCG-GAGCGC TTTTCATCACGCTGA TERM 210 598171 - 598201 + G 74 -11.8 -3.71848 | overlap 598173 CATCGGTGCGCTGAT GCTGCCGAACCTGG CAA CCGCGTTCGGCATC TTCTTCCTGCGACAG TERM 211 598173 - 598199 + G 73 -13 -3.44284 | overlap 598171 TCGGTGCGCTGATGC TGCCGAACCTGG CAA CCGCGTTCGGCA TCTTCTTCCTGCGAC MSMEG_0517 597644 - 598570 + | sugar binding-protein dependent transporter system permease MSMEG_0518 598612 - 599718 + | sn-glycerol-3-phosphate ABC transporter ATPase MSMEG_0519 599806 - 599922 + | hypothetical protein MSMEG_0520 600086 - 600733 + | porin TERM 212 601227 - 601201 - f 70 -13.7 -2.64561 | gap 1, overlap 601200 601198 ACTCGAATAGAAGAT GCCGAACGCCGC GGCG GCGGCGC-CGGC TGCGATCGCACTCGA MSMEG_0522 601925 - 602077 + | pp24 protein MSMEG_0523 603006 - 602113 - | DNA-binding protein TERM 213 602896 - 602923 + g 95 -22.8 -3.01712 | CTCCTCGCGGCGCAG GCCCGGCACACG GCGA CGTGTGCCGGGC TGTTCGAGACCGACC MSMEG_0524 603863 - 603036 - | short chain dehydrogenase TERM 214 603884 - 603896 + H 71 -9.1 -3.68988 | opp_overlap 603883 603884 TCTCCTTTCGCAAAG GCGGA GGT TCCGC TTGTCTTCAGTCAAC MSMEG_0525 603897 - 604079 + | hypothetical protein TERM 215 604728 - 604699 - g 71 -10.8 -3.59979 | opp_overlap 604705 604707, overlap 604700 CCTCGGCAGGCCAAA CCTGACGGT-GCGC ACCA GCGCCACCGTC-GG TCGCATCCTGTTCGA MSMEG_0526 604076 - 605674 + | oxidoreductase, GMC family protein TERM 216 606368 - 606333 - g 78 -13.2 -3.61517 | overlap 606365 ATGTTGCGCGAACAA CAGGCGGCCGGCCTGC TGCC GCAGGCGGAACACCTG ACCAAGGCGATCCCG MSMEG_0527 605757 - 606500 + | 2-hydroxycyclohexnecarboxyl-CoA dehydrogenase MSMEG_0528 606524 - 607450 + | hypothetical protein MSMEG_0529 610940 - 607494 - | serine/threonine-protein kinase PknK TERM 217 609171 - 609221 + g 75 -16.8 -2.84812 | CGTCGAGGGCTCCAG GGTCTCCAGCACGTTCTCGGCGAG GAA CTCGCTGATCACGTGGTGGCGGCC TGTCATCGTCTCGAT TERM 218 611017 - 611001 - R 70 -11.5 -3.41602 | opp_overlap 610996, overlap 611002 CCGACCCGAGCATAA CGCCGGC GTT GCCGGCA GGTGGGGTTCTCGGA MSMEG_0530 611756 - 611055 - | short chain dehydrogenase MSMEG_0531 613190 - 611979 - | putative acyl-CoA dehydrogenase MSMEG_0532 613836 - 613219 - | transcriptional regulator, TetR family protein TERM 219 613583 - 613611 + g 70 -8.8 -3.88291 | gap 1, opp_overlap 613572, overlap 613579 ATCAGCTGACCCGCG CTGCGGACCG-CG TCTT CGACGGTGCGCGG TTTCTCGGCGTCGTA MSMEG_0533 614440 - 613901 - | gp236 protein MSMEG_0534 615804 - 614551 - | permease, major facilitator family protein MSMEG_0535 616439 - 615801 - | GntR-family protein transcriptional regulator TERM 220 616449 - 616490 + r 81 -11.8 -3.84246 | gap 2, overlap 616454 616455 616456 GTCCACGTCGACCAG CGTAGCGCGCCTTGCATGCA AGAA TGCATGCAAGGCG-G-TGTG TTATTGGTTACTGCT TERM 221 616454 - 616488 + r 90 -15.9 -3.50119 | gap 1, overlap 616449 616455 616456 CGTCGACCAGCGTAG CGC-GCCTTGCATGCA AGAA TGCATGCAAGGCGGTG TGTTATTGGTTACTG TERM 222 616455 - 616486 + r 93 -17.4 -3.31329 | overlap 616454 616449 616456 GTCGACCAGCGTAGC GCGCCTTGCATGCA AGAA TGCATGCAAGGCGG TGTGTTATTGGTTAC TERM 223 616456 - 616485 + r 100 -20.9 -2.58074 | overlap 616455 616454 616449 TCGACCAGCGTAGCG CGCCTTGCATGCA AGAA TGCATGCAAGGCG GTGTGTTATTGGTTA MSMEG_0536 617064 - 616498 - | intracellular protease, PfpI family protein MSMEG_0537 617564 - 617136 - | hypothetical protein TERM 224 617531 - 617543 + g 86 -4.1 -5.15969 | CGATGTACTGAAGCA GATTG GGG CGATC TTTTTTCCGTTCGGC MSMEG_0538 618070 - 617579 - | regulatory protein, MarR MSMEG_0539 618818 - 618144 - | transcriptional regulator, Crp/Fnr family protein MSMEG_0540 618988 - 619611 + | transcriptional regulator, putative MSMEG_0541 619744 - 620037 + | hypothetical protein MSMEG_0542 620034 - 620738 + | ANTAR domain-containing protein MSMEG_0544 620809 - 621762 + | transcriptional regulator MSMEG_0543 622790 - 621750 - | hypothetical protein TERM 225 622812 - 622837 + r 74 -12.7 -3.21218 | gap 1, opp_overlap 622797 GCTCCTTGGATGCGA TGTGTGGCA-CC GGT GGATGCCACACA TTCATCCTGCGGCGT MSMEG_0545 623513 - 622986 - | transcriptional regulator, LuxR family protein MSMEG_0546 624613 - 623786 - | hypothetical protein TERM 226 623944 - 623981 + g 83 -20.6 -2.70932 | opp_overlap 623968 CGGTGACCGTGAGCC CGGCCTCGGTGAGGGC CGTGAA GACCTCGCCGAGGCCG TGGTTGAACGACACG MSMEG_0548 624722 - 625600 + | chromosome replication initiation inhibitor protein MSMEG_0547 626658 - 625597 - | ISMsm5, transposase MSMEG_0549 627430 - 626702 - | ABC transporter, permease protein MSMEG_0550 628440 - 627472 - | sulfonate binding protein MSMEG_0551 629271 - 628489 - | ABC nitrate/sulfonate/bicarbonate transporter, ATPase subunit MSMEG_0552 629360 - 629854 + | hypothetical protein MSMEG_0553 629922 - 631274 + | sugar ABC transporter, substrate-binding protein, putative MSMEG_0554 631271 - 632140 + | ABC transporter permease protein, putative MSMEG_0555 632137 - 632928 + | ABC transporter permease protein TERM 227 632981 - 632957 - g 70 -12.2 -3.27774 | gap 1 CAGCGGAATCACCAA GACCTACGGCG GCAG CGCCGT-GGTC GACGGGCTGGACCTG MSMEG_0556 632925 - 633980 + | ABC transporter, nucleotide binding/ATPase protein MSMEG_0557 634165 - 634302 + | hypothetical protein MSMEG_0558 634299 - 634826 + | hypothetical protein TERM 228 634846 - 634879 + T 76 -13.9 -3.12327 | opp_overlap 634847, overlap 634844 GTAGCACAAACAGAA ATGGACTGGTACGGA AAAT TCCGTACCAGCCCAC TGTTACGTCTGGGGG TERM 229 634878 - 634847 - T 100 -19.6 -4.41609 | opp_overlap 634846 634844 TAGCACAAACAGAAA TGGACTGGTACGGA AAAT TCCGTACCAGCCCA CTGTTACGTCTGGGG MSMEG_0559 635102 - 634899 - | hypothetical protein dapB 636284 - 635220 - | dihydrodipicolinate reductase N-terminus domain-containing protein MSMEG_0561 636421 - 637101 + | putative TetR family protein receptor protein TERM 230 637878 - 637919 + G 86 -12.4 -4.19336 | opp_overlap 637885 CACGGCGCGGCAGCC GACGAC-AGGGCGCCGCTAC GCGT GTGACG-CGCCCTTGTCGTC TTTCTTCGCGTCCTT MSMEG_0563 637149 - 637904 + | hypothetical protein MSMEG_0562 638879 - 637893 - | hypothetical protein MSMEG_0564 640326 - 638914 - | xanthine/uracil permease MSMEG_0565 641435 - 640338 - | putative glycosyl transferases group 1 TERM 231 640431 - 640454 + g 71 -11.6 -3.61398 | GGCTGCGGCGAGCGT CCGGCCGGGC GCGG GGTCGGCCGG TTCTTCCAGCGCCGC TERM 232 641313 - 641299 - G 73 -7 -4.20783 | ATCTCACGGAAGAAA CCGCGG TCG CCGCTG CGTGCCAGAGACCAC MSMEG_0566 642280 - 641432 - | aliphatic amidase MSMEG_0567 643711 - 642290 - | selenophosphate synthetase TERM 233 642503 - 642471 - G 75 -8.4 -4.17089 | CCGAAACCCGGAAAA CACGTCAGCCAG GGGGCCATG CCGGCCGACGCG GGTCGCGGGATCGTC MSMEG_0568 644760 - 643711 - | radical SAM domain-containing protein MSMEG_0569 646045 - 644774 - | flavoprotein involved in K+ transport MSMEG_0570 646338 - 646042 - | hypothetical protein MSMEG_0571 647233 - 646331 - | hydrolase, carbon-nitrogen family protein TERM 234 647111 - 647089 - G 70 -14.8 -2.80816 | opp_overlap 647099 TGCCCAGTGACGAGA GGTAGCCGCC GAT GGCGGCTTCC GGAAGTACCAGGAAG MSMEG_0572 647764 - 647243 - | hypothetical protein MSMEG_0574 648080 - 648733 + | putative ECF sigma factor RpoE1 MSMEG_0573 649296 - 648700 - | putative ECF sigma factor RpoE1 TERM 235 649945 - 649927 - g 71 -2.3 -4.63218 | CGTCCGGGAAGAAAA GTCGGCC AACGG GATCGAC GCGCAAACCTACTGC MSMEG_0575 649562 - 649978 + | MmpS1 protein MSMEG_0576 649975 - 652866 + | MmpL4 protein TERM 236 653039 - 653009 - g 74 -13.3 -3.2614 | gap 1 GAGCGCCTACACCAA CGCGGCGATGGGAC CACA GTTCC-TCGCCGCG TTCGGATGGGAGCGT MSMEG_0577 652908 - 654131 + | major facilitator superfamily protein, putative TERM 237 654132 - 654111 - f 74 -2.1 -4.82901 | GCGGCTTTACAAAAA CCTGCCAAG ATGT CACGGTAGG GCATGGACTTCTCAC MSMEG_0578 654135 - 655271 + | acyl-CoA dehydrogenase middle domain-containing protein TERM 238 655592 - 655603 + G 73 -7.2 -4.11216 | opp_overlap 655568 655589 655592 GCGAGGTGAAGACCA CCGC GACA GCGG TTTTCGGGCTGCGCC MSMEG_0580 655294 - 656088 + | hypothetical protein MSMEG_0579 657565 - 656078 - | helix-turn-helix, Fis-type TERM 239 656329 - 656363 + g 70 -15.6 -2.70932 | ATTCGGCGAATGCCG CGGCCCGCTGCGGATC GAT GAGCCCCAGCGGCCCG TCGTTGACGACGCGG gabT 657676 - 659022 + | 4-aminobutyrate transaminase MSMEG_0582 659025 - 660479 + | succinic semialdehyde dehydrogenase MSMEG_0583 660752 - 660492 - | hypothetical protein MSMEG_0584 662471 - 660999 - | hypothetical protein MSMEG_0585 661011 - 662237 + | L-carnitine dehydratase/bile acid-inducible protein F TERM 240 662314 - 662276 - GT 100 -13.9 -4.24786 | opp_overlap 662275 662276 662281 662282 TCGAGAACAGACAAA CGAAGCCGCTGTCGGAC GTGAT GTCCGACAGCCATTTCG CTGTGTTTCGGAGAA TERM 241 662276 - 662314 + gT 74 -14.6 -2.54325 | opp_overlap 662276, overlap 662275 662281 662282 TCGAGAACAGACAAA CGAAGCCGCTGTCGGACG TGA TGTCCGACAGCCATTTCG CTGTGTTTCGGAGAA TERM 242 662281 - 662309 + gT 71 -9.5 -3.78962 | opp_overlap 662276, overlap 662276 662275 662282 AACAGACAAACGAAG CCGCTGTCGGACG TGA TGTCCGACAGCCA TTTCGCTGTGTTTCG MSMEG_0586 662897 - 662508 - | STAS domain-containing protein rhaU 663229 - 663549 + | L-rhamnose 1-epimerase TERM 243 663769 - 663788 + G 75 -10.6 -4.07687 | overlap 663770 663777 GAGCGCCAACGCCTT CGGCGCCG CGAT CGGCGCCA TTTTGGGCGGACCGT MSMEG_0588 663590 - 664921 + | putative rhamnose tranport protein, MFS family protein rhaI 664918 - 666081 + | L-rhamnose isomerase TERM 244 668093 - 668111 + G 71 -2.2 -4.62069 | overlap 668100 GCATGTGCCGGTGGA TGCGGGGG TCG CCGCGGCG TTTTTGCGATGAGCG rhaD 666069 - 668123 + | short chain dehydrogenase rhaB 668184 - 669641 + | rhamnulokinase MSMEG_0592 669649 - 670650 + | putative rhamnose catabolism operon transcriptional regulator MSMEG_0593 671384 - 670737 - | hypothetical protein MSMEG_0594 672817 - 671348 - | iron-sulfur cluster binding protein MSMEG_0595 673551 - 672814 - | glycolate oxidase MSMEG_0596 673641 - 674327 + | GntR family transcriptional regulator MSMEG_0598 674388 - 674783 + | hypothetical protein MSMEG_0597 676060 - 674780 - | hypothetical protein TERM 245 675516 - 675486 - G 71 -11.1 -3.60234 | gap 1 GCATAGATGTGGAAA CCGCGCGAGCCCGA GGTC TTGGGC-CACGCGG TCAGGCCGTGATCGG TERM 246 676786 - 676812 + G 73 -15.8 -2.62616 | CCAACCGGGCGGCCC CGCCGTCGCTCG CCC CGATCGGCGGCG TGCTCTCGCACGTGC MSMEG_0599 676104 - 677750 + | acyl-CoA synthetase MSMEG_0600 677821 - 678603 + | dehydrogenase MSMEG_0601 678928 - 678620 - | hypothetical protein TERM 247 678884 - 678901 + g 72 -4 -4.60889 | opp_overlap 678863 CGCCGAGCGAAAGGT CGCCGG ATCGCG CCAGCG TTTTTCAACATCATT MSMEG_0602 679124 - 678969 - | hypothetical protein TERM 248 679217 - 679195 - R 77 -11.9 -3.59315 | opp_overlap 679214 GCAATCAGTGCGAAA GCCGCGGCC GTGGT GCCCGCGGC TCGAAGGAGACGTTG MSMEG_0603 681582 - 679378 - | putative acyl-CoA dehydrogenase MSMEG_0604 682661 - 681693 - | glyoxylate reductase TERM 249 681922 - 681980 + g 71 -9.6 -3.72695 | gap 3, overlap 681923 CCGCGCAGCGCCTCG ATCAGCGCGG-CCTCGTCGACGATCGGCC CGCG GGCCG-T-GTTGACCAGGACCGCGCCGGG TTTCATCGCCGCGAT TERM 250 682586 - 682560 - G 70 -12.3 -3.28712 | CTCCTCGCCGCAGAA CCGCACATCGA GCCAG TCGAGGTGCGG CGCAAGGAAGTCCAG MSMEG_0605 683758 - 682652 - | hypothetical protein MSMEG_0606 684420 - 683791 - | transcriptional regulator, TetR family protein MSMEG_0608 684535 - 685134 + | glyoxalase family protein MSMEG_0607 685946 - 685104 - | methyltransferase, putative, family protein MSMEG_0609 686830 - 685955 - | helix-turn-helix domain-containing protein MSMEG_0610 686934 - 687842 + | beta-lactamase MSMEG_0611 687835 - 689295 + | para-nitrobenzyl esterase MSMEG_0612 689912 - 689301 - | transcriptional regulator, TetR family protein MSMEG_0613 689985 - 690890 + | hypothetical protein MSMEG_0614 690921 - 691814 + | methyltransferase MSMEG_0615 691998 - 693767 + | ATPase, AAA family protein TERM 251 694483 - 694541 + G 91 -21.7 -3.02461 | GGCCGACCGCGCCGT GACCGAC-GCGCTGGGCCTCGGCGGGCAG GCC CTGGC-GCCGAGGCCCATCGCAGCCGGGC TGTTCAACGCGGTTC MSMEG_0616 693764 - 695320 + | hypothetical protein TERM 252 695695 - 695658 - g 89 -19.1 -3.28712 | gap 1 GGTGGTGCGCGACAA CGTGCGCGCGCACGCCGC CGA GCAGCGCGC-CGCGCTCG AGTGGTCACACCCCG MSMEG_0617 695317 - 699294 + | ftsk/SpoIIIE family protein MSMEG_0618 699291 - 699602 + | PE family protein TERM 253 699898 - 699860 - g 78 -16 -3.05521 | gap 1, overlap 699851 699887 AGCAGAGCGCCAACA GCGCGGCCGCGGCCGTC CAGCAC GA-GACCGCGGCCGCGG CGTACTCCACGGCAC TERM 254 700103 - 700128 + G 93 -21.9 -3.21099 | GCGCTGCGGTGGCCG CGGCGCCGGTG AGCG CACCGGCGCCG TTCCTGCTCAAACCG MSMEG_0619 699604 - 701175 + | PPE family protein TERM 255 701359 - 701394 + G 74 -11.8 -3.74251 | gap 1, overlap 701361 GGCCTTCCACATGGG TGAGGCCTCCGCGGCCT TCC AGGCCGCGCATGCC-CG TTTCGTCGAGGTCTC MSMEG_0620 701225 - 701518 + | PE family protein MSMEG_0621 701553 - 701840 + | low molecular weight protein antigen 7 MSMEG_0622 701853 - 702734 + | putative DNA-binding protein TERM 256 702922 - 702892 - g 79 -14.6 -3.28712 | GCCCGCCCGTGAGAA CGACGGTGCCGCCG ATC CGGCCGCAGCGCCG AACCCGGTGCGGCTC snm 702737 - 704164 + | secretion protein Snm4 MSMEG_0624 704172 - 705551 + | subtilase family protein MSMEG_0626 705548 - 706477 + | hypothetical protein MSMEG_0625 707632 - 706433 - | hypothetical protein MSMEG_0627 709398 - 707650 - | glycosyl transferase, family protein 39 TERM 257 708880 - 708862 - G 77 -11.6 -3.86015 | CATCTTGGTGAGAAA CGCGGCCC CCA GGGCAGCG CCTGCCGCCACCACC MSMEG_0628 710328 - 709441 - | amidohydrolase family protein MSMEG_0629 710373 - 711137 + | trans-aconitate 2-methyltransferase TERM 258 711191 - 711174 - T 74 -2.7 -4.72272 | gap 1 CTGGCGCATGAAAAA CTCCA-CG AAT CGCTAGAG GGGCAGGCCGTCGCG MSMEG_0630 711989 - 711186 - | hypothetical protein TERM 259 711437 - 711462 + g 74 -14.7 -3.01712 | CCCGCAGCATCGTGA TCACGTGGGCG ATGG CGCCCGCGTGG TATTCGGCGCGCGCG MSMEG_0632 714025 - 713531 - | hypothetical protein MSMEG_0634 714093 - 714764 + | PAP2 superfamily protein MSMEG_0633 716181 - 714718 - | PAP2 superfamily protein MSMEG_0635 716288 - 716914 + | hypothetical protein MSMEG_0636 717405 - 716920 - | hypothetical protein MSMEG_0637 719002 - 717434 - | iron-sulfur binding oxidoreductase MSMEG_0638 719172 - 721103 + | hypothetical protein MSMEG_0639 722114 - 721104 - | oligopeptide transport ATP-binding protein AppF MSMEG_0640 723097 - 722111 - | oligopeptide transport ATP-binding protein OppD MSMEG_0641 724056 - 723094 - | binding-protein-dependent transport systems inner membrane component TERM 260 723897 - 723928 + g 74 -12.3 -3.61715 | gap 1 CGAGGCCGAGATCCG CGCTGACCCGGGCG ATGAG CGCC-GGGTTGGCG TTCTTGCCCGCGATG MSMEG_0642 725070 - 724060 - | ABC transporter permease MSMEG_0643 726722 - 725067 - | extracellular solute-binding protein, family protein 5, putative MSMEG_0644 726931 - 727503 + | cupin domain-containing protein MSMEG_0645 727629 - 728471 + | putative beta-1,3-glucanase MSMEG_0646 730170 - 728572 - | putative transporter MSMEG_0648 730087 - 730212 + | hypothetical protein phnC 730958 - 730167 - | phosphonate ABC transporter, ATP-binding protein MSMEG_0649 731934 - 730969 - | phosphonate-binding periplasmic protein TERM 261 731476 - 731446 - G 81 -3.8 -4.82901 | GGTCGGGTACAAAAA GCCCGACGTCGACC CCG GATCGACGAAGCAC ACCTTCTTGCCGGCA MSMEG_0650 732117 - 732869 + | GntR-family protein transcriptional regulator MSMEG_0651 732984 - 733664 + | hypothetical protein MSMEG_0652 733710 - 734573 + | hypothetical protein MSMEG_0654 736520 - 735585 - | hypothetical protein MSMEG_0655 736636 - 737415 + | glucose 1-dehydrogenase, putative MSMEG_0656 738018 - 737416 - | transcriptional regulator, TetR family protein MSMEG_0657 739248 - 738064 - | Rieske (2Fe-2S) domain-containing protein MSMEG_0658 740168 - 739263 - | polyamine ABC-transporter, inner membrane subunit MSMEG_0659 741106 - 740165 - | polyamine ABC transporter permease protein MSMEG_0660 742385 - 741111 - | extracellular solute-binding protein MSMEG_0661 742519 - 743907 + | glutamate-1-semialdehyde 2,1-aminomutase TERM 262 744366 - 744392 + G 73 -12.3 -3.40403 | gap 1 GAGTGGCACTCGCGC GCGCCCTGGTGC TGCG GC-CCAGGGTGC TTCTGCTCGACGAAC MSMEG_0662 743924 - 745081 + | putrescine transport ATP-binding protein PotG TERM 263 745087 - 745062 - T 91 -16.9 -3.57144 | TGGTGGAGCCGGAAA CCGCGCTCAGC GCGC ACTGAGCGCGG TCAGCGGCGGCGCGG MSMEG_0663 745795 - 745088 - | TetR-family protein transcriptional regulator MSMEG_0664 745913 - 747574 + | FAD dependent oxidoreductase MSMEG_0666 747619 - 749646 + | acetyl-CoA synthetase, putative MSMEG_0665 750838 - 749627 - | sarcosine oxidase subunit beta, putative MSMEG_0667 750914 - 752092 + | butyryl-CoA dehydrogenase TERM 264 752069 - 752125 + F 75 -14.5 -2.66634 | gap 1 AACCGCGGACCGCAG GCG-CTTCTGGGCACAGCCGGCTG AGTTCGCCGA CGGTCGGCTGTGCCCGCGAGTCGC TACTGTGATGACATG MSMEG_0668 752138 - 752347 + | integral membrane protein MSMEG_0670 752392 - 753333 + | FAD dependent oxidoreductase MSMEG_0669 753836 - 753330 - | hypothetical protein MSMEG_0671 755068 - 753920 - | S-(hydroxymethyl)glutathione dehydrogenase MSMEG_0672 755814 - 755161 - | hypothetical protein TERM 265 755957 - 755928 - R 100 -25.1 -3.47494 | ACGCAAGTACGACAA CGGTGCCGCTGCC ATCG GGCAGCGGCACCG TGTCAGTGCCGTCCG MSMEG_0673 756524 - 755982 - | hypothetical protein TERM 266 756824 - 756810 - R 84 -12.8 -3.73068 | GTGGCAACGGAACAA CCCGCG CCA CGCGGG GGTGGGCATACACGT MSMEG_0674 757855 - 756845 - | ErfK/YbiS/YcfS/YnhG family protein TERM 267 756928 - 756938 + g 72 -6.8 -4.2558 | opp_overlap 756919 756927 756922 TCAAACCGATGCAAC CGTG GCT CACG TTTTCATAACCGATC MSMEG_0675 759272 - 758055 - | putative cytochrome P450 144 MSMEG_0676 759460 - 759996 + | putative transcriptional regulatory protein dcd 760192 - 760761 + | deoxycytidine triphosphate deaminase MSMEG_0679 761054 - 762742 + | hypothetical protein TERM 268 763904 - 763925 + G 79 -11.5 -4.08216 | GTGTACGACCCCAAG GCCGTCGAG AACT CGCGACGGC TTTTCCCCACCCTGA MSMEG_0680 762836 - 764170 + | UDP-glucose 6-dehydrogenase TERM 269 765212 - 765158 - g 73 -16.3 -2.62184 | CTCCGGTGCAGATGA CCGCCCGCG-CGGCCGTGCGCGACGTC GAC GTCGCCG-GCACCGCCGTCGGGCGCGG CGAACTGGTGGTGCT MSMEG_0681 764248 - 765516 + | P450 heme-thiolate protein TERM 270 765760 - 765728 - g 71 -11.9 -3.59979 | GTTCGTGACGGTAAA CCGCCCGACGACCCC CAG GGGGCCATCGAATGG CTCAACGCCGGCGCG MSMEG_0682 765518 - 766270 + | hypothetical protein MSMEG_0683 766289 - 766657 + | hypothetical protein MSMEG_0684 768784 - 766670 - | aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding TERM 271 767417 - 767444 + g 74 -12.1 -3.54424 | gap 1 CACGGTGTAACGGCC CTCGGCG-GCAT AGGTG ATGCGCGCCGAG TTTCCCGGCATCGCC MSMEG_0685 769776 - 768781 - | oxidoreductase, molybdopterin-binding subunit MSMEG_0686 770294 - 769773 - | oxidoreductase MSMEG_0687 771569 - 770334 - | hypothetical protein MSMEG_0688 772862 - 771588 - | aminotransferase AlaT MSMEG_0689 773110 - 773346 + | hypothetical protein TERM 272 773406 - 773370 - T 100 -30.3 -3.64822 | overlap 773373 ATTCCCTTACCGAAA GAAGCGGCCCCCTCCCG AAT CAGGAGGGGGCCGCTTC CCAACTACGCGTGGC TERM 273 773403 - 773373 - T 100 -26.2 -3.96216 | overlap 773370 CCCTTACCGAAAGAA GCGGCCCCCTCCCG AAT CAGGAGGGGGCCGC TTCCCAACTACGCGT MSMEG_0690 776555 - 773427 - | iron-sulfur cluster-binding protein TERM 274 773653 - 773683 + g 70 -8.3 -3.85698 | gap 2, overlap 773654 773663 CCCACGACGGGCGGT TCG-GGCTT-GGCCG GCT CGGCCGGAGCCGCGG TTTCTGCCGGCGCCG TERM 275 773970 - 773988 + g 71 -11.6 -3.61398 | AGCAGCGGGTGCCTC GGCGGCCG GTG CGGCGGCC TTCTTCGCGCCGGGA TERM 276 774147 - 774183 + g 89 -22.9 -2.91274 | overlap 774154 GCCGGTGACCGGCTT GGCCTCGGCCCCACCGG CTG CCGGGGCGGCCGGGGCC TCTGCTTCGGGTGCG MSMEG_0691 779364 - 776854 - | putative transcriptional regulatory protein TERM 277 778902 - 778870 - G 83 -12 -3.96148 | gap 2 CGCCCGCACCAGAAA CG-GCAG-GCCCGCGG TGA CCGCGAGCACCGCGCG CACCGTGTCCGGCGG MSMEG_0692 781166 - 779379 - | hypothetical protein TERM 278 779619 - 779656 + g 70 -15 -2.75528 | overlap 779615 CGACGTGGGCTCGGT CG-TCGTGGTGGTGACCG GAGG CGG-CACCACCACGGTCG TGGTCTGTTGCCCGT MSMEG_0693 781358 - 781909 + | hypothetical protein TERM 279 781931 - 781971 + F 100 -14.2 -5.5762 | opp_overlap 781938 781941, overlap 781938 CGCCCTCAGCATTCA CTGAAAAGATGCATGACC AGTTA GGTCATGCGTCTTTTTTG TTTTTTGTGTTTGCT TERM 280 781964 - 781938 - f 81 -10.9 -4.20084 | opp_overlap 781931 781938, overlap 781941 AGCATTCACTGAAAA GATGCATGACC AGTTA GGTCATGCGTC TTTTTTGTTTTTTGT TERM 281 781938 - 781964 + F 100 -13.1 -6.07374 | opp_overlap 781938 781941, overlap 781931 AGCATTCACTGAAAA GATGCATGACC AGTTA GGTCATGCGTC TTTTTTGTTTTTTGT TERM 282 782649 - 782613 - f 74 -11.6 -3.61715 | gap 1 CACCCTGGGCAACAA GACCACGAACACCGCCA CCAA CGGCGGCG-TGGTGGTC GACGGGGACAACGCC TERM 283 783320 - 783276 - f 89 -19.3 -2.62184 | gap 1 CGCGTTCTGAGACCA GCACCCCCGCGGGGGCCACC CGAAGT GGTGGCCCCCGCTC-GGTGC GTATGCCTACCGTTG MSMEG_0695 783439 - 785247 + | isoniazid inductible protein IniA MSMEG_0696 785593 - 785252 - | alanine-rich protein MSMEG_0697 785996 - 785583 - | integral membrane protein MSMEG_0698 786166 - 787659 + | isoniazid inductible protein IniC MSMEG_0699 787715 - 789565 + | hypothetical protein MSMEG_0700 790090 - 789578 - | hypothetical protein MSMEG_0701 790135 - 790428 + | hypothetical protein TERM 284 790507 - 790546 + T 84 -12 -3.96618 | opp_overlap 790460 GCGGCCACGCTGGCG CCGAGGAGCGCAGGTGTC GAGT GATGCCAGGGCGCCTCGG TTGTTTGCCCTTGCC MSMEG_0702 791553 - 790621 - | monooxygenase MSMEG_0703 792196 - 791573 - | hypothetical protein MSMEG_0704 792803 - 792264 - | LpqJ protein MSMEG_0705 794181 - 792856 - | putative permease of the major facilitator superfamily protein MSMEG_0706 794811 - 794200 - | 4-carboxy-4-hydroxy-2-oxoadipate aldolase MSMEG_0707 795467 - 794808 - | hypothetical protein MSMEG_0708 795587 - 796540 + | transcriptional regulator, LysR family protein dnaK 796766 - 798634 + | molecular chaperone DnaK grpE 798631 - 799281 + | co-chaperone GrpE dnaJ 799323 - 800495 + | chaperone protein DnaJ MSMEG_0713 800492 - 800851 + | transcriptional regulator, MerR family protein MSMEG_0712 801438 - 800848 - | transcriptional regulator, TetR family protein MSMEG_0714 802700 - 801516 - | acyl-CoA dehydrogenase MSMEG_0715 803472 - 802729 - | 3-oxoacyl-[acyl-carrier-protein] reductase TERM 285 803439 - 803455 + g 76 -7.9 -4.3129 | overlap 803442 CGCCCGATACCAGCA CCACGCG ATC CGCGTCG TTTTCGTACTGCGTC TERM 286 804101 - 804140 + G 77 -17.8 -2.52464 | overlap 804109 804113 GGGCCGTCCTGATGG CCGTCGAGCACGCGCCGC CGAA GCGGCGTGCGTTCTACGG TAGCTTCCCGCAGGC MSMEG_0716 803662 - 804960 + | major facilitator superfamily protein MSMEG_0718 804960 - 806609 + | acetyl-CoA synthetase MSMEG_0717 807498 - 806596 - | aldose 1-epimerase subfamily protein MSMEG_0719 808682 - 807543 - | flavohemoprotein TERM 287 808369 - 808332 - G 82 -14.2 -3.72324 | overlap 808333 CACGCCGATGAACAA CGCGACCGCGTCGC-GCG TGGC CGCCGCGAGGCGGTCG-G TCCACCGGTCGGCCA MSMEG_0720 809722 - 808724 - | integral membrane protein TERM 288 809774 - 809787 + r 71 -4.5 -4.58663 | gap 1 TGAATGTGAGGGTAA CG-CCG ACG CGGACG TTTTTCAACGGTCAT TERM 289 809877 - 809853 - R 71 -10.6 -3.67989 | AAAACGCCAGGTAAA CGGGGCCGCC GCCAG GGCGACCCGG TGTCGCGCGAAGCGG TERM 290 809950 - 809990 + r 76 -14 -3.10761 | gap 1, opp_overlap 809941 809939 AGAAGACGACGCTGC GCGCGATCGC-GGCCGACG CCAA CGTCGACCCGCGATGGTGC TCTATCTGTTCGGCT MSMEG_0722 811017 - 810514 - | hypothetical protein MSMEG_0723 811729 - 811187 - | hypothetical protein MSMEG_0724 811835 - 812161 + | IS1137, transposase orfA TERM 291 812174 - 812207 + G 79 -18.9 -2.63596 | overlap 812178 TAGTCGTGGAGTTCA TCAGCGCCCACCAGC ACAT GCGGGTGGGCGTTGA TGGTCTCAAGTGGGG TERM 292 812178 - 812203 + G 80 -16.1 -3.24925 | overlap 812174 CGTGGAGTTCATCAG CGCCCACCAGC ACAT GCGGGTGGGCG TTGATGGTCTCAAGT MSMEG_0725 812164 - 813117 + | IS1137, transposase orfB MSMEG_0726 813267 - 813145 - | hypothetical protein MSMEG_0727 814006 - 813749 - | hypothetical protein MSMEG_0728 814680 - 814372 - | hypothetical protein MSMEG_0729 815572 - 814904 - | hypothetical protein MSMEG_0730 816844 - 815642 - | oleandomycin glycosyltransferase MSMEG_0731 817474 - 816851 - | hypothetical protein MSMEG_0732 817638 - 820184 + | chaperone ClpB TERM 293 820246 - 820200 - T 77 -12.3 -3.58343 | opp_overlap 820200, overlap 820219 TCTACCAGCGCCAAA CGGCATTCCAGCAGGGAAAGT GCGAG AGCACGCCTGCTGGAATGCCG TTTCGGCCGTAAGGG TERM 294 820200 - 820246 + T 75 -11.8 -3.55444 | gap 3, opp_overlap 820200 820219 TCTACCAGCGCCAAA CGGCATTCCAGCAGGGAAAGTGC GAGA GCACG--CC-TGCTGGAATGCCG TTTCGGCCGTAAGGG dapB 821342 - 820263 - | dihydrodipicolinate reductase N-terminus domain-containing protein MSMEG_0734 822418 - 821339 - | Rieske (2Fe-2S) domain-containing protein MSMEG_0735 822502 - 823164 + | putative transcriptional regulator MSMEG_0736 823231 - 824067 + | hypothetical protein MSMEG_0737 824113 - 824889 + | dehydrogenase MSMEG_0738 824920 - 825822 + | hypothetical protein MSMEG_0739 825815 - 826459 + | spou rRNA methylase family protein TERM 295 827384 - 827407 + G 78 -13.8 -3.62522 | opp_overlap 827361 TCGGCGTGGGATCAC CGGCAGACCG TGGA CGGCCTGCCG TTGTTCAGCGCGTTC TERM 296 827621 - 827605 - g 72 -5.7 -4.34402 | overlap 827607 TGCCGGAGACCAAAA CGGCGCC GGA GACGGCG AAGTGGGACACGACG MSMEG_0740 826475 - 827656 + | glycosyl hydrolase family protein 76 TERM 297 828071 - 828025 - g 73 -13 -3.40403 | gap 2 TGGTGTGTACCAGAA GCCGCTGGCGACCATGCGCACC TACCT GGAGCGCATGGCCG-C-GCTGC CCGAGCAGATCGAGC MSMEG_0741 827660 - 828568 + | hypothetical protein MSMEG_0742 829526 - 828573 - | transcriptional regulatory protein TERM 298 828788 - 828732 - G 78 -17.7 -2.70932 | opp_overlap 828731 GGTCGTGGCGAACCA CTCGCCGCCGACCTGCAGGCCCGGGCC CTT GACCTGCGCCAGCCGGCCGCCCGCGAG ATCCTTGGCCACCGC TERM 299 829517 - 829504 - G 75 -5.2 -4.58663 | overlap 829505 ACCACCGCTGAAAAA GCGC GTAGTT GCGC GGGTGTCACGTAGGC MSMEG_0743 829538 - 830698 + | xanthine dehydrogenase MSMEG_0744 830754 - 831644 + | carbon monoxide dehydrogenase medium chain MSMEG_0745 831647 - 832123 + | 2Fe-2S-binding domain-containing protein MSMEG_0746 832120 - 834519 + | carbon-monoxide dehydrogenase, large subunit MSMEG_0747 834538 - 835275 + | carbon monoxide dehydrogenase F protein MSMEG_0748 835259 - 836161 + | ATPase MSMEG_0749 836174 - 836869 + | carbon monoxide dehydrogenase subunit G (CoxG) family protein TERM 300 837730 - 837784 + G 74 -12.7 -3.61398 | GTGACGCGCGCCAAC GCGAAGGTGCACGACCGGTAC-GGCGG CAC CCGCCTGGGCCGGTCGATCGCCG-CGC TTCTTGCCGCGCCGC MSMEG_0751 836866 - 838059 + | hypothetical protein MSMEG_0750 838778 - 838056 - | membrane protein fbaA 838859 - 839896 + | fructose-bisphosphate aldolase MSMEG_0753 840730 - 839930 - | hypothetical protein MSMEG_0754 840804 - 841211 + | hypothetical protein MSMEG_0755 842115 - 841222 - | cobalt-zinc-cadmium resistance protein MSMEG_0757 842208 - 842702 + | hypothetical protein MSMEG_0756 843478 - 842699 - | peptidase, M50B family protein MSMEG_0758 844063 - 843524 - | hypothetical protein purA 844214 - 845509 + | adenylosuccinate synthetase TERM 301 845591 - 845618 + G 71 -9.8 -3.72695 | gap 1, opp_overlap 845561 845556 845554 TCCCCGTGTTCGAGG CCGCCGAG-CCCG GGC CGGGATTCGGCCG TTTCCTCACCGCGAT TERM 302 845873 - 845917 + G 78 -10.6 -4.15006 | gap 1, opp_overlap 845889, overlap 845874 845876 AGTTCAGTCGTTTCC ACGTGGGCGGCAACTACGCCG TCCA CGGCGGCGT-GCTGCCCATGC TTTTCGACTCGCTGT MSMEG_0760 845509 - 846159 + | thioesterase family protein MSMEG_0761 846360 - 846166 - | hypothetical protein MSMEG_0762 847571 - 846366 - | cytochrome P450 FAS1 MSMEG_0763 849621 - 847627 - | antibiotic transporter MSMEG_0764 851209 - 849626 - | Na+/H+ antiporter MSMEG_0765 851254 - 851556 + | zinc finger, UBP-type purT 851580 - 852980 + | phosphoribosylglycinamide formyltransferase 2 MSMEG_0767 852984 - 853469 + | hypothetical protein MSMEG_0768 853466 - 853876 + | hypothetical protein metZ 853886 - 855103 + | O-succinylhomoserine sulfhydrylase TERM 303 855484 - 855508 + G 79 -14.9 -3.28712 | opp_overlap 855474 CCAGATCGAGGCGTA CCGCGCCGGCG ATC CGCTGCCGCGG TTCTAGACGCCGAAA MSMEG_0770 855107 - 855514 + | hypothetical protein TERM 304 855524 - 855570 + T 93 -18.8 -3.60098 | opp_overlap 855524, overlap 855533 TTCTAGACGCCGAAA CCGACGAAATTGCCGTTGCGCG TTG CGTTTTGCGGCAATTTCGTCGG TTTCGCGTAGGAGCT TERM 305 855570 - 855524 - T 77 -12.2 -3.59262 | opp_overlap 855524 855533 TTCTAGACGCCGAAA CCGACGAAATTGCCGTTGCGCG TTG CGTTTTGCGGCAATTTCGTCGG TTTCGCGTAGGAGCT MSMEG_0771 856444 - 855584 - | short chain dehydrogenase MSMEG_0772 857672 - 856524 - | phytase TERM 306 857424 - 857442 + g 73 -12.4 -3.42996 | CGCGGTGTGGAAGCG GACCGGGC CGT GCTCGGTC TTGTCGTCGCTGATG TERM 307 857680 - 857720 + H 71 -7.3 -4.18494 | overlap 857681 ATACCCATCCGGAAC GCCGCCGCGGCCCGAGC GACTCGA GCGCCGGCCTTGGCGGA TTTTCGATCACGGTG MSMEG_0773 857779 - 858309 + | acetyltransferase TERM 308 858572 - 858592 + F 70 -5.3 -4.36914 | overlap 858573 GTTGCGGTGGTGGAG AGCTTCGGG ATG CTCGAGGCG TTTTATCCCGGACGG TERM 309 859541 - 859560 + G 74 -11.4 -3.73647 | gap 1 GTGTCCTGGTGTTCG CCGC-CGGC GTG GCCGTGCGG TTGTTCATCGGTCGC MSMEG_0776 859468 - 859779 + | hypothetical protein MSMEG_0775 860522 - 859776 - | metallo-beta-lactamase superfamily protein TERM 310 860189 - 860246 + g 70 -12 -3.2794 | gap 3 GCGGCTGCCAGGCCT GACGGGCCACGCCCGCCG-GGGTGGCCTG CTC CAGG-TACTCGCGCCTGGCGTGGC-CGAC TTCGTCTGCGTGGCA MSMEG_0777 860554 - 861567 + | F420-dependent glucose-6-phosphate dehydrogenase MSMEG_0778 862510 - 861746 - | putative transcriptional regulator TERM 311 862115 - 862067 - G 90 -19.5 -3.14132 | GCGTCCGGCGACGAA GCAGGCGAGGTCCACCGACAGGG GCA CCCCGTCGGCGAACCGCAACCGC CGGATCGTGAAAATG TERM 312 862490 - 862462 - G 79 -7.4 -4.43844 | gap 1 CCAGCATCGACAAAA TCCGGCGG-CGTA CGTC TTCGGCCACCGGA CCGCCCGACGTCTCC MSMEG_0779 863295 - 862519 - | short chain dehydrogenase MSMEG_0780 864413 - 863307 - | phosphotransferase enzyme family protein MSMEG_0781 864599 - 866176 + | amino acid permease TERM 313 866823 - 866880 + G 86 -21.2 -2.82516 | gap 1, opp_overlap 866806, overlap 866870 TGGCGGCGCGGTTCC GCGCCGACGTCGAGGCCGCCATCGCCG ACCTG CAGCGCTG-CGGCCACGGCGTCAGCGC TCTGATCGTCGACAC TERM 314 867280 - 867236 - g 82 -15.8 -3.30741 | overlap 867229 ATCGAGAACGAGGAA CTGGTGAC-CAGCGCGGCAACC GTC GGC-GCCGCGCTGCGCCACGAG CTCACCCGCATCACC MSMEG_0782 866234 - 867556 + | aminotransferase class-III pta 867578 - 869656 + | phosphate acetyltransferase ackA 869653 - 870783 + | acetate kinase MSMEG_0785 871771 - 870902 - | hypothetical protein MSMEG_0786 874298 - 872016 - | serine/threonine protein kinase MSMEG_0787 875266 - 874298 - | extracellular solute-binding protein, family protein 3 MSMEG_0788 876675 - 875362 - | hypothetical protein MSMEG_0790 876862 - 877341 + | hydrolase, NUDIX family protein thiE 878008 - 877325 - | thiamine-phosphate pyrophosphorylase TERM 315 877525 - 877543 + g 74 -11.6 -3.78022 | opp_overlap 877518 GCACCAGATCCAGAC CCGGCGCG GGA CGCCCCGG TTTGGTGGGTGTCGG thiO 878147 - 879151 + | glycine oxidase ThiO thiS 879148 - 879348 + | sulfur carrier protein ThiS thiG 879341 - 880099 + | thiazole synthase TERM 316 880185 - 880162 - g 74 -11.7 -3.73224 | gap 1 GGACCCGGCATCAAA CCGTCGGCGC CGGGT GCGCCG-CGG CGGGCAGGCCGCTCG MSMEG_0794 880120 - 880869 + | hypothetical protein MSMEG_0795 880883 - 881794 + | ABC transporter ATP-binding protein MSMEG_0796 881791 - 882549 + | ABC transporter integral membrane subunit MSMEG_0798 885068 - 885736 + | hypothetical protein MSMEG_0799 885893 - 886069 + | hypothetical protein MSMEG_0800 886332 - 886511 + | hypothetical protein MSMEG_0801 886821 - 887522 + | IS1096, tnpR protein MSMEG_0802 888852 - 887530 - | IS1096, tnpA protein MSMEG_0803 888571 - 889056 + | hypothetical protein MSMEG_0804 889623 - 889186 - | hypothetical protein MSMEG_0805 889631 - 890662 + | hypothetical protein MSMEG_0806 890643 - 892154 + | hydrolase TERM 317 892436 - 892492 + G 70 -12.2 -3.35679 | gap 1, opp_overlap 892410 892466 GAGACGCCCGAGTTC GAGC-GACTGGGCACCGTGGGCGGCGG AAAC CCGTCGCTGACCGTGTCGAGTCAGCGC TTCTCGGTGGAGCAG MSMEG_0807 892151 - 893602 + | leupeptin-inactivating enzyme 1 MSMEG_0808 893674 - 894762 + | chalcone synthase Pks10 TERM 318 894936 - 894978 + G 74 -14.7 -3.04792 | gap 1 GCCGGTGCCGCCCTG GAGGCCCGTCG-GCGCCGGG TCCG CCCGGCGCTCGGCCGGCCCA TGTTCGCGGTGGTGC MSMEG_0809 894762 - 895265 + | isoprenylcysteine carboxyl methyltransferase MSMEG_0811 895262 - 896290 + | oxidoreductase MSMEG_0810 897566 - 896271 - | putative pyrimidine permease RutG MSMEG_0812 898832 - 897612 - | amino acid transporter MSMEG_0813 899174 - 898848 - | hypothetical protein TERM 319 900164 - 900124 - g 86 -14 -3.9461 | gap 1, overlap 900153 GTTGTTCAACAAGAA CGGCTACCGCGACA-CCAC GATG GAGGACATCGCGGCAGCCG TCGGCATGCCGGCCT MSMEG_0815 899192 - 900652 + | transcriptional regulator, TetR family protein MSMEG_0814 900891 - 900619 - | membrane protein MSMEG_0816 902392 - 900908 - | flavin-binding monooxygenase MSMEG_0817 902464 - 903387 + | LysR-family protein transcriptional regulator MSMEG_0818 903499 - 904851 + | transporter, major facilitator family protein MSMEG_0819 904883 - 906142 + | N-carbamoyl-L-amino acid amidohydrolase MSMEG_0821 906142 - 907605 + | glutamyl-tRNA(Gln) amidotransferase subunit A MSMEG_0820 907868 - 907599 - | hypothetical protein MSMEG_0822 909241 - 907874 - | cytochrome P450 MSMEG_0823 909842 - 909288 - | hypothetical protein MSMEG_0824 910492 - 909845 - | hypothetical protein thiD 911318 - 910482 - | phosphomethylpyrimidine kinase thiC 912901 - 911327 - | thiamine biosynthesis protein ThiC TERM 320 912404 - 912440 + g 84 -16 -3.39749 | gap 1, overlap 912398 GGTCGACAGGTCCAT GATGGTGTCGGC-ACCC CAGC GGGTCGCCCACACCATC TTGTCGACTTCTTCG MSMEG_0827 913283 - 915019 + | major facilitator superfamily protein MFS_1 MSMEG_0828 916205 - 915135 - | immunogenic protein MPT63 TERM 321 916130 - 916186 + g 77 -17.9 -2.60257 | gap 1, overlap 916160 CGGCGAACGCGGTCG CCATCCCCGCGGTGCCCGCG-GCGCC CGAGAT GGCGAGCGCGGCCGCGGCGGCGATGG TCAATTGTGAGATCT TERM 322 916311 - 916321 + r 82 -6.8 -4.65895 | GAGACCCTTGATACC GTGC CGC GCAC TTTTTCGCTGGAAAG xth 917192 - 916410 - | exodeoxyribonuclease III TERM 323 917638 - 917650 + G 72 -3.3 -4.65933 | CGCGGATCGGTGAGA TCGAC CTG GACGA TTTGTTTTCCACGTA MSMEG_0831 917379 - 918095 + | short chain dehydrogenase MSMEG_0830 919005 - 918079 - | acetyltransferase, gnat family protein def 919617 - 919024 - | peptide deformylase MSMEG_0833 919745 - 920056 + | hypothetical protein TERM 324 920307 - 920281 - g 70 -12.9 -3.31248 | overlap 920271 CAAGACGTCCGAGAA GGCCGAGCCGG AACCG CCGGCCCGGGC CGAGGTGCGCGTGTT MSMEG_0834 920096 - 920572 + | tuberculin related peptide sodC 920583 - 921293 + | copper/zinc superoxide dismutase MSMEG_0836 921274 - 922404 + | carboxylate-amine ligase MSMEG_0837 922415 - 922870 + | hypothetical protein MSMEG_0838 923928 - 922879 - | AsnC-family protein transcriptional regulator TERM 325 924260 - 924202 - g 73 -9.5 -3.85698 | overlap 924246 924247 GGTGGCGGCGACAAA CGGTGTGACGTCGGGGCGCTGGC-GCGGA TCA TCGACTGCCAGAACCTCGGCGCCA-ACCG GTACCGGCTGGCGTG MSMEG_0839 924025 - 924651 + | ATP-dependent protease La TERM 326 924687 - 924745 + T 73 -14.9 -2.52676 | gap 1, opp_overlap 924699, overlap 924691 924699 GCAGCGTTAACTATT G-CGAGTGTGAAACCTCTGCGATT TTTTGGCGATTT ATTCGCAGAGGTTTCGCACTCGTC TGCGTTCGAGGCGTC TERM 327 924874 - 924912 + T 78 -13.1 -3.45033 | gap 1, opp_overlap 924873 924872, overlap 924880 CTCCGTCACGAAATC CTGGTCGCGGAGTCGCGC GACG GCGCGGC-CGTCGACCAG TTCTACTCGGTTGTC MSMEG_0840 925509 - 924856 - | hypothetical protein TERM 328 924984 - 924994 + g 76 -2.4 -4.7497 | overlap 924970 CGCCGTTCGGTGCGT AGCC GTC GGCA TTTTTGATGACTACG TERM 329 925492 - 925461 - G 71 -2.1 -4.59069 | gap 1, opp_overlap 925461, overlap 925456 AGCACAACGAGAAAA CGGTTCCGCCAGCA GTGAT TGC-GGCGGTCACG TATTCGCCGCGTTCC TERM 330 926758 - 926768 + r 72 -8.2 -4.15577 | CGCATCGGTGTACTC CGCG AAT CGCG TTGTTTGATTGTTCG MSMEG_0842 927264 - 926980 - | hypothetical protein TERM 331 927162 - 927191 + g 77 -11.5 -3.95584 | gap 1, opp_overlap 927176 CTTCAAGCCCATCGG CGGCAGTGGAGACA CAG TGTC-CCACTGCAG TTTCGTTAATCGCCG MSMEG_0843 927853 - 927500 - | putative monovalent cation/H+ antiporter subunit G MSMEG_0844 928140 - 927850 - | putative monovalent cation/H+ antiporter subunit F MSMEG_0845 928676 - 928137 - | putative monovalent cation/H+ antiporter subunit E MSMEG_0846 930268 - 928673 - | putative monovalent cation/H+ antiporter subunit D MSMEG_0847 930732 - 930265 - | putative monovalent cation/H+ antiporter subunit C TERM 332 930364 - 930414 + g 71 -10.5 -3.69663 | gap 1, overlap 930365 930372 GTCCTCGTCTTCGTC CTCGTCGACGACCTTGAGGGACAC GCGG GTGTC-CTCGGGGTCGTTGCTGAC TTCTTCGATCGTGGT TERM 333 930372 - 930406 + g 72 -13.7 -3.25169 | gap 1, overlap 930365 930364 CTTCGTCCTCGTCGA CGACCTTGAGGGACAC GCGG GTGTC-CTCGGGGTCG TTGCTGACTTCTTCG MSMEG_0848 933611 - 930732 - | putative monovalent cation/H+ antiporter subunit A TERM 334 933794 - 933840 + G 72 -6.4 -4.25104 | gap 1, opp_overlap 933764 GGGCGCCGGACCCAC CGGCCC-GATGCCGGCGTGTG AGCCGA CGCTCGGCGGCGTGAGGGCTG TTTTGCTGGACGAGC MSMEG_0849 933768 - 934085 + | oxygenase TERM 335 934071 - 934128 + F 100 -23.7 -2.6063 | gap 1, opp_overlap 934051 ACTCGCCGGCCCGCG CCGAGATTGCACTGAGGGACAGATTCCG GAG CGAGGTC-GTCCCTCAATGCAATCTCGG TGAATTGTCGGTGCC MSMEG_0850 934162 - 935004 + | hypothetical protein MSMEG_0851 936345 - 935059 - | citrate transporter TERM 336 936328 - 936304 - G 74 -12.1 -3.54029 | GGCGATGAACCAGAA GGCGACGACGA ATA TCGTCAGCGCC AGAACCGGAGCCAGC MSMEG_0852 936822 - 936364 - | CBS domain-containing protein MSMEG_0853 937103 - 936855 - | hypothetical protein TERM 337 937231 - 937209 - H 80 -9 -4.42653 | ACTGTATGGACAAAA CCCGCGGGGA CAG TCCACGCTGG TGGGGTGAAACCGGC MSMEG_0854 937236 - 938204 + | two-component system sensor kinase MSMEG_0856 938204 - 938851 + | DNA-binding response regulator, LuxR family protein MSMEG_0855 939270 - 938818 - | hypothetical protein TERM 338 939284 - 939338 + r 100 -22.7 -4.49981 | ATGGCAGCCTCCCGA TATCTTGACGGTGGCAAGTTC-CACTG TCG CA-TGCGAACTTGTCACCGTCAAGATA TTTTCTGCTCCTGTC MSMEG_0857 939645 - 939331 - | hypothetical protein MSMEG_0859 939739 - 940752 + | transcriptional regulator, TetR family protein MSMEG_0858 942986 - 940749 - | cell division control protein Cdc48 MSMEG_0860 943848 - 942988 - | CDP-diacylglycerol--serine O-phosphatidyltransferase TERM 339 943056 - 943077 + g 86 -13.7 -3.85165 | gap 1, overlap 943057 GTGCACGGCGGATGG C-GCGGCGCG CGG CGCGCCGCTG TTTCGGTTTCACGTC TERM 340 943057 - 943075 + g 90 -17.4 -3.50832 | overlap 943056 TGCACGGCGGATGGC GCGGCGCG CGG CGCGCCGC TGTTTCGGTTTCACG psd 944543 - 943845 - | phosphatidylserine decarboxylase MSMEG_0862 945775 - 944579 - | molybdopterin biosynthesis protein MoeA MSMEG_0863 946695 - 945772 - | short chain dehydrogenase MSMEG_0864 946733 - 947272 + | membrane flanked domain-containing protein MSMEG_0865 947269 - 948768 + | membrane flanked domain-containing protein MSMEG_0867 948794 - 949609 + | hydrolase MSMEG_0866 951312 - 949606 - | DNA or RNA helicase of superfamily protein II TERM 341 951551 - 951512 - R 100 -19.4 -4.40358 | opp_overlap 951518, overlap 951514 ACGGATGTGACAAAA GAGGAAGCCTCGCACATC GTGT GATGTGCGAGGCTTCCGT ACCTACTCGGGATCT TERM 342 951549 - 951514 - R 100 -26.4 -3.80877 | opp_overlap 951518, overlap 951512 GGATGTGACAAAAGA GGAAGCCTCGCACATC GTGT GATGTGCGAGGCTTCC GTACCTACTCGGGAT TERM 343 951518 - 951545 + r 100 -20 -3.08464 | opp_overlap 951514 951512 GTGACAAAAGAGGAA GCCTCGCACATC GTGT GATGTGCGAGGC TTCCGTACCTACTCG TERM 344 951593 - 951651 + r 71 -10 -3.57561 | overlap 951594 CCCGTGATCAGGGGT TGTTGGCGCCGGTGGTACCCGCGGTGCC CGG GGTGCCGTCCGCACCACCGTTGCCGCCG TTTCCACCGTTGCCC MSMEG_0868 955409 - 951585 - | hypothetical protein TERM 345 952679 - 952713 + g 77 -15.6 -3.15544 | CGAGGGTGCCGCCGT TGCCGCCGTCACCGCC GGT GGCGGTGCCGCTGGCG TTGCTGCCGATGACG TERM 346 953840 - 953859 + g 74 -12.8 -3.65046 | CGCGGCCGCCGGTCG CGGTGCCG CTCA CGGCGCCG TTGTTGCCGTAGGCG TERM 347 955345 - 955366 + g 74 -13.7 -3.34398 | overlap 955344 GGTTTGAGTCCGGCG CCCTCGGCG AAAT CGCTGAGGG TCTTTCGGACCCCAC MSMEG_0869 955503 - 955901 + | hypothetical protein TERM 348 956182 - 956224 + T 86 -18.5 -2.62184 | gap 1 GGTCAACGCCGTCGC GCGATACGGACGCCCACTCC TGTC GGAGCGGGCGTCCG-ATAGC TGATGTCAACCCGCC MSMEG_0870 958486 - 956321 - | oxidoreductase TERM 349 958037 - 958007 - G 78 -16.8 -3.08679 | GCGTTCCATCGAACA GCGCAGGTCGGTCA CCA CGGCCGACCCGCGC AGTGCCGCGTCGGCG MSMEG_0871 959457 - 958483 - | putative aldehyde or xanthine dehydrogenase, molybdopterin binding subunit protein MSMEG_0872 960078 - 959461 - | twin-arginine translocation pathway signal TERM 350 959802 - 959812 + g 76 -2.4 -4.72986 | overlap 959791 CGCCGCATGCGCCTT GGTC GCA GCCC TTTTTCGTGCCGGTG MSMEG_0873 960379 - 960209 - | hypothetical protein MSMEG_0874 960615 - 961319 + | transcriptional regulator, GntR family protein MSMEG_0875 961391 - 962794 + | putative sialic acid transporter MSMEG_0877 962791 - 963723 + | dihydrodipicolinate synthase MSMEG_0876 964637 - 963720 - | short chain dehydrogenase TERM 351 963929 - 963882 - G 70 -15.4 -2.70932 | GTCGGGGCCGAAGTA CTGCCCACCGAGGGCGCCGGGA TCGG TCGCGGCGCGCAGGGTCGGCAG CGCCCCGAGGGCGGC MSMEG_0878 964736 - 965305 + | transcriptional regulator MSMEG_0879 965526 - 965380 - | hypothetical protein TERM 352 965672 - 965658 - g 74 -11.4 -3.78934 | CGTCCTGGAGAAGAA GTGGGG CGC CCCCAC GATCACCAACGATGG groEL 965533 - 967158 + | chaperonin GroEL TERM 353 967171 - 967207 + F 100 -24.5 -4.55295 | opp_overlap 967171, overlap 967176 TGAGTCCAGACTCAA GAGAGGCCTCGGCGCGC TTG GCGCGCCGGGGCTTTTC TTTGTTTATCCCCAG TERM 354 967207 - 967171 - f 88 -17.9 -3.12999 | opp_overlap 967171 967176 TGAGTCCAGACTCAA GAGAGGCCTCGGCGCGC TTG GCGCGCCGGGGCTTTTC TTTGTTTATCCCCAG TERM 355 967176 - 967202 + F 100 -23 -5.22481 | opp_overlap 967171, overlap 967171 CCAGACTCAAGAGAG GCCTCGGCGCGC TTG GCGCGCCGGGGC TTTTCTTTGTTTATC MSMEG_0881 967303 - 968136 + | hypothetical protein MSMEG_0882 968583 - 968200 - | hypothetical protein MSMEG_0883 970351 - 968609 - | amidohydrolase family protein MSMEG_0884 970433 - 970813 + | glyoxalase family protein MSMEG_0885 971320 - 970817 - | hypothetical protein MSMEG_0886 972810 - 971320 - | serine/threonine-protein kinase PknD TERM 356 972198 - 972188 - G 75 -8.2 -4.15565 | GCCAGCAGGTGAAAA GCGG TGG CCGC CAAGGCGTATTGATC MSMEG_0887 972865 - 973422 + | hypothetical protein TERM 357 973428 - 973455 + G 70 -15.6 -2.77999 | gap 1, overlap 973425 973423 CCCGCGGTGACCCGG TGGTGGCC-GCCC GTC GGGCTGGCCGCCA TGGTGTTGCTCGGTG MSMEG_0888 973419 - 973982 + | hypothetical protein MSMEG_0889 973997 - 975526 + | succinic semialdehyde dehydrogenase TERM 358 975670 - 975623 - g 72 -6.9 -4.34402 | gap 2, overlap 975624 975625 TGCCCGACACCAAAA CCGTGCGGGACGCTGCGGCGCAC GTGC GTGCGCTGGTGCA-CCCGCA-GA TCTACAACCACAGCA TERM 359 976139 - 976116 - g 74 -13.8 -3.33261 | CGCCAATCCGCACAA GGCGCCCAGG CTGT CCTGGGCGGC CGAACTCGTAGCGCA MSMEG_0890 975595 - 976194 + | HD domain-containing protein MSMEG_0891 976256 - 977107 + | polyphosphate kinase 2 TERM 360 977132 - 977165 + F 75 -2.9 -4.72986 | overlap 977133 GAGCCGAGTATGAGT TCGAGCGCCGCCC GAAGAGGA GGACGGCGTGCGC TTTTTGATGACGCTG MSMEG_0892 977160 - 978005 + | hypothetical protein MSMEG_0893 978347 - 978024 - | hypothetical protein MSMEG_0894 978540 - 979904 + | dihydrodipicolinate reductase MSMEG_0895 980004 - 980747 + | GntR family transcriptional regulator TERM 361 981312 - 981293 - g 78 -6.3 -4.56597 | overlap 981275 981294 CGCGCCGTGGAAAAA GCGCGGC CGCTAC GCCGCGA TCCCACAAGCCGGTG MSMEG_0896 980820 - 982190 + | integral membrane transport protein MSMEG_0897 982187 - 983464 + | hypothetical protein TERM 362 983691 - 983744 + G 70 -14.6 -2.78384 | gap 1, overlap 983693 CTGGGTCCAGCTCGA CCAC-TGCGCCGACCTCGAGCGCAT CCGTC ACGCGCTCGACCTCGGCGCAGGTGC TGTCATGGCCGACGG TERM 363 983693 - 983741 + G 77 -17.4 -2.66316 | overlap 983691 GGGTCCAGCTCGACC ACTGCGCCGACCTCGAGCGCAT CCGTC ACGCGCTCGACCTCGGCGCAGG TGCTGTCATGGCCGA MSMEG_0898 983461 - 984273 + | tagatose-1,6-bisphosphate aldolase GatY MSMEG_0899 986376 - 984361 - | prolyl oligopeptidase family protein MSMEG_0900 986441 - 987964 + | eptc-inducible aldehyde dehydrogenase MSMEG_0901 987998 - 988474 + | hypothetical protein MSMEG_0902 989344 - 988475 - | cyclopropane-fatty-acyl-phospholipid synthase 1 lpdA 989521 - 990915 + | dihydrolipoamide dehydrogenase TERM 364 990931 - 990943 + G 71 -10.5 -3.72576 | overlap 990937 GAAACGAGATCGTCT CCGGC ATA GCCGG TTTGGTGGCCGGCCA MSMEG_0904 990912 - 991181 + | hypothetical protein pcaC 991748 - 991188 - | hypothetical protein MSMEG_0906 993212 - 991776 - | DNA-binding protein TERM 365 992540 - 992569 + g 72 -6.3 -4.25283 | overlap 992539 TGAACACCTGCTGAC CGCGTGAGATGTG GTTG CTCATCTCCAGCG TTTTGGTGGCCGGGT MSMEG_0907 993284 - 993628 + | hypothetical protein MSMEG_0908 993604 - 994002 + | hypothetical protein MSMEG_0909 994104 - 994952 + | acyl-ACP thioesterase superfamily protein MSMEG_0910 995167 - 995033 - | hypothetical protein TERM 366 995591 - 995578 - g 71 -9.5 -3.71848 | CCGCCGCATCAACAA CGCGC TGCT GCGCG CCGACGAGATCGCCA aceA 995201 - 996487 + | isocitrate lyase TERM 367 996523 - 996564 + F 100 -20.9 -2.87931 | gap 1 CCGGTAAGTGTTGAC AGCG-CAGGCCCCGCTCAGG TTT CTTGGGCGGGGCCTGTCGCG TGTCTGCGGAATGCG MSMEG_0912 996618 - 997478 + | 3-hydroxybutyryl-CoA dehydrogenase MSMEG_0913 997643 - 998515 + | methoxy mycolic acid synthase 1 TERM 368 998522 - 998539 + T 82 -6.9 -4.64598 | GTCAAGTAGGTTTTT CCGTCGC CGAG GCTACGG TTTTTCGCGTGATTC MSMEG_0914 999427 - 998555 - | hypothetical protein MSMEG_0915 1000424 - 999537 - | polyphosphate kinase 2 superfamily protein TERM 369 999880 - 999907 + g 70 -15 -2.82516 | overlap 999884 AGGGTGGTGCCTGCG TCGACGAGTTCG CGCT CGAACTCGTTGA TCTCGTCGTAGCGGG TERM 370 999884 - 999903 + g 70 -12.2 -3.30443 | overlap 999880 TGGTGCCTGCGTCGA CGAGTTCG CGCT CGAACTCG TTGATCTCGTCGTAG MSMEG_0916 1001133 - 1000429 - | transcriptional regulator, TetR family protein TERM 371 1001365 - 1001403 + G 89 -8.1 -4.95155 | opp_overlap 1001366, overlap 1001366 1001369 GTTTACGGCGGATGA AGGTGGTGGCGCTGA GTTTCCTGG TCGGCGCCACCGTCA TTTTTCTGCTGTGCA TERM 372 1001366 - 1001402 + G 71 -11.6 -3.5637 | opp_overlap 1001366, overlap 1001365 1001369 TTTACGGCGGATGAA GGTGGTGGCGCTGA GTTTCCTGG TCGGCGCCACCGTC ATTTTTCTGCTGTGC TERM 373 1002264 - 1002289 + G 74 -14.7 -3.09635 | GTCGACGATCCGTCG TCGGCGTTGCG CACC CGCATCGCCGA TTCGGTGGTGCGCAT MSMEG_0917 1001253 - 1002569 + | hypothetical protein MSMEG_0918 1002657 - 1003085 + | transcriptional regulator, XRE family protein TERM 374 1003768 - 1003750 - g 71 -11.6 -3.62046 | CGAGCCGGTCAAGAA GGCTGCCG CTC CGGCCGCC AAGAAGGCCGCCCCC MSMEG_0919 1003169 - 1003867 + | heparin-binding hemagglutinin TERM 375 1003918 - 1003974 + F 88 -10.9 -4.32034 | gap 1, overlap 1003921 GTCATTCGACGTTGA CGATGGCGCCCGCATAGGCTGGTGAG GTGATA CTTGCCGACCT-TGCGGGCGTCATTA TTTTGGTACTCGTCG TERM 376 1003921 - 1003971 + F 100 -14.8 -4.27443 | gap 1, overlap 1003918 ATTCGACGTTGACGA TGGCGCCCGCATAGGCTGGTGAG GTGATA CTTGCCGACCT-TGCGGGCGTCA TTATTTTGGTACTCG MSMEG_0920 1003944 - 1004228 + | hypothetical protein TERM 377 1004219 - 1004239 + F 75 -4 -4.63218 | gap 1 TGAGATCCAAGGAAA GTCGCG-CT GAGT AGATGCGAC TTTTGTTCGCCGCGC MSMEG_0921 1004242 - 1004646 + | hypothetical protein deoC 1004646 - 1005329 + | deoxyribose-phosphate aldolase MSMEG_0923 1006302 - 1005367 - | hypothetical protein TERM 378 1006036 - 1005978 - G 74 -15.9 -2.81464 | gap 1, overlap 1005946 CGACGACGCACGAGA CGATCCCGGCGACGATGCTGTCGGCGCG GTTG CGCGCGTACAGC-TCACCGCCGAGTACG CCCGCGACCACCAGC MSMEG_0924 1007163 - 1006363 - | hydrolase, carbon-nitrogen family protein TERM 379 1007090 - 1007052 - G 82 -18.1 -3.01712 | gap 1 TGGCCTCGGGGAACA GCACCAGTCGCGC-GCCG TCGT CGGCAGCGCGCCGGGTGC AGGACTCGACCAGCT MSMEG_0925 1007946 - 1007170 - | hypothetical protein MSMEG_0926 1008442 - 1007951 - | hypothetical protein MSMEG_0927 1008995 - 1008489 - | hypothetical protein murB 1009022 - 1010113 + | UDP-N-acetylenolpyruvoylglucosamine reductase MSMEG_0929 1010120 - 1011478 + | ErfK/YbiS/YcfS/YnhG family protein MSMEG_0930 1012237 - 1011488 - | serine 3-dehydrogenase MSMEG_0931 1012557 - 1012270 - | hypothetical protein MSMEG_0932 1012561 - 1013760 + | ROK family protein MSMEG_0933 1013771 - 1015075 + | hypothetical protein MSMEG_0934 1015072 - 1015569 + | hypothetical protein MSMEG_0935 1015609 - 1016352 + | 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase TERM 380 1016392 - 1016403 + F 70 -5.8 -4.25283 | opp_overlap 1016376 CGCATTCCAGCAGGC GTGC ACTC GCAC TTTTCCTGACGGAAT senX3 1016604 - 1017758 + | sensor histidine kinase SenX3 TERM 381 1018356 - 1018335 - g 76 -7.3 -4.34402 | TCGGCGACACCAAAA CCCTTGACG TGCA CGTCAAAAG GCTGCGGTCGAAGAT regX3 1017764 - 1018441 + | DNA-binding response regulator RegX3 MSMEG_0938 1019265 - 1018465 - | hypothetical protein MSMEG_0939 1019379 - 1020338 + | Ppx/GppA phosphatase family protein MSMEG_0940 1020368 - 1021438 + | hypothetical protein MSMEG_0941 1021461 - 1022306 + | AP endonuclease, family protein 2 MSMEG_0942 1022339 - 1023154 + | hypothetical protein proC 1023180 - 1024040 + | pyrroline-5-carboxylate reductase MSMEG_0944 1024188 - 1024406 + | DNA binding domain-containing protein TERM 382 1024480 - 1024513 + F 78 -7.4 -4.35524 | gap 3, overlap 1024483 CGTCCCCGGGCGCCT CGTGCCGC-CCGC-CGG AGC CCGCGCAGAGCGGC-CG TTTTCCGTTTACCGG MSMEG_0945 1024591 - 1024692 + | hypothetical protein MSMEG_0946 1024821 - 1025849 + | NAD dependent epimerase/dehydratase family protein MSMEG_0947 1025886 - 1026950 + | acyltransferase MSMEG_0948 1027514 - 1026981 - | hypothetical protein MSMEG_0949 1028493 - 1027603 - | HAD-superfamily protein subfamily protein IB hydrolase MSMEG_0950 1028839 - 1028516 - | hypothetical protein MSMEG_0951 1028600 - 1028842 + | glutaredoxin 2 TERM 383 1030268 - 1030223 - g 73 -9.6 -3.90744 | gap 2 GTGCGTGTGAAACAA CTCGCGAGCGCCCCCGGCGGGG ACAG CTACGCCGAGG-CGCT-GCGGG AACTGTTCGAACTCG hemA 1029002 - 1030357 + | glutamyl-tRNA reductase hemC 1030361 - 1031317 + | porphobilinogen deaminase hemD 1031413 - 1033245 + | uroporphyrinogen-III synthase TERM 384 1033275 - 1033286 + F 70 -5.8 -4.30844 | opp_overlap 1033260 1033259 GGCATTCCAGCAGGC GTGC ACTC GCAC TTTTCCTGATGGAAT hemB 1033330 - 1034310 + | delta-aminolevulinic acid dehydratase MSMEG_0955 1034771 - 1034274 - | hypothetical protein MSMEG_0957 1034307 - 1034738 + | hypothetical protein MSMEG_0958 1034759 - 1035154 + | hypothetical protein TERM 385 1035344 - 1035356 + G 77 -3.4 -4.78107 | overlap 1035341 CGGCTATGACCTGTG GATC CCGCT GATC TTTTTGGTCCTGGTG MSMEG_0959 1035189 - 1035683 + | putative transmembrane protein MSMEG_0960 1035680 - 1035910 + | putative transmembrane protein MSMEG_0962 1036854 - 1037447 + | TetR-family protein transcriptional regulator MSMEG_0963 1037522 - 1037764 + | hypothetical protein MSMEG_0964 1037801 - 1038283 + | pyridoxamine 5'-phosphate oxidase family protein TERM 386 1038876 - 1038865 - f 82 -5.8 -4.84311 | overlap 1038867 TTGCAGACAACAAAA CAGG TGGG CCTG AGGGGCCGCCGGCGA MSMEG_0965 1038908 - 1039543 + | porin MSMEG_0966 1040067 - 1039684 - | hypothetical protein MSMEG_0967 1040470 - 1040090 - | hypothetical protein TERM 387 1040523 - 1040535 + H 75 -3.3 -4.83615 | overlap 1040524 ATTTTCGAATTCCGT TTGCG CGG CGCGG TTTTTGTCGAAACTG MSMEG_0968 1040556 - 1042010 + | cytochrome P450 hemL 1042040 - 1043395 + | glutamate-1-semialdehyde aminotransferase TERM 388 1043779 - 1043721 - g 74 -13.7 -3.31144 | gap 2, overlap 1043705 CTTCGAGGGCCAGAA GGTCGCGCCGGGTGACGGCGCGCTGCGCG ATC CGCGCAACTGGCCG-CGCCTG-CGCGATC CCCGCAAGCCGTCGT MSMEG_0970 1043446 - 1044054 + | phosphoglycerate mutase family protein MSMEG_0971 1044054 - 1044707 + | hypothetical protein MSMEG_0972 1044704 - 1045489 + | cytochrome C biogenesis protein transmembrane region TERM 389 1045547 - 1045530 - g 78 -10.5 -4.17425 | opp_overlap 1045530 1045524, overlap 1045522 1045516 AGAACTACCCGAAAA CCCGCCG GATG CGGCAGG TTTGCGTGTGCTCGG MSMEG_0973 1045489 - 1047138 + | hypothetical protein ccsB 1047135 - 1048130 + | cytochrome c-type biogenesis protein CcsB TERM 390 1048588 - 1048631 + G 71 -11.7 -3.59698 | overlap 1048589 1048592 CCACCACGGCGCTGC TCGGCCGGCGCAAGTCC-CCG CCGA CGGCGGGCTGGCGCCG-CTGG TTGTATCTCGCGTCG MSMEG_0975 1048209 - 1049537 + | hypothetical protein MSMEG_0976 1049719 - 1049555 - | hypothetical protein MSMEG_0977 1049796 - 1050068 + | hypothetical protein MSMEG_0978 1050065 - 1051105 + | aminotransferase, class V superfamily protein MSMEG_0979 1051203 - 1051451 + | keratin associated protein TERM 391 1051514 - 1051456 - T 100 -27.6 -3.22475 | opp_overlap 1051441, overlap 1051454 1051457 1051503 GCCACCGGTAGAACA TCGAGCGTTGGCTTGTGTGCGAGATCTC TCG GAGAATTCGCACACCAGCCAACGCTCGG CGCCGTGGACCATTC TERM 392 1051513 - 1051457 - T 100 -31.1 -2.53271 | opp_overlap 1051441, overlap 1051454 1051456 1051503 CCACCGGTAGAACAT CGAGCGTTGGCTTGTGTGCGAGATCTC TCG GAGAATTCGCACACCAGCCAACGCTCG GCGCCGTGGACCATT MSMEG_0980 1053159 - 1051528 - | signal transduction histidine kinase MSMEG_0981 1053329 - 1053688 + | two-component system regulator MSMEG_0982 1053805 - 1054854 + | immunogenic protein MSMEG_0984 1054857 - 1056935 + | trap transporter, 4tm/12tm fusion protein MSMEG_0983 1057566 - 1056913 - | two-component system response regulator TERM 393 1057549 - 1057530 - G 82 -13.6 -3.68988 | overlap 1057531 CTTCACGCAACAGAA CGTCGTCG TCGG CGACGACG ACTTGCAGCCCACTC TERM 394 1057551 - 1057531 - G 70 -15.5 -2.81072 | overlap 1057530 TTCACGCAACAGAAC GTCGTCGTC GGC GACGACGAC TTGCAGCCCACTCAT MSMEG_0985 1059033 - 1057684 - | sugar transporter family protein TERM 395 1058572 - 1058558 - G 78 -8.5 -4.37157 | AACGACGAGAAGAAA CCGCG TCGCT CGCGG GTTGCGGCCTCCGAC MSMEG_0986 1059849 - 1059121 - | RemM protein TERM 396 1059904 - 1059924 + H 86 -15.5 -3.20723 | opp_overlap 1059895 ACACTAGCCGTAGCG TCGCTACGC TAC GCGTAGCGA TTCGGTTGGTGGACG MSMEG_0987 1059955 - 1060326 + | hypothetical protein menA 1061200 - 1060331 - | 1,4-dihydroxy-2-naphthoate octaprenyltransferase MSMEG_0989 1061291 - 1061536 + | hypothetical protein mtaP 1061533 - 1062312 + | 5'-methylthioadenosine phosphorylase MSMEG_0991 1062309 - 1063349 + | NAD-dependent epimerase/dehydratase MSMEG_0992 1063406 - 1064533 + | 2-nitropropane dioxygenase, NPD MSMEG_0993 1065556 - 1064543 - | histidine kinase resD 1066230 - 1065553 - | DNA-binding response regulator ResD TERM 397 1066675 - 1066725 + G 70 -15.2 -2.78816 | TCGGACGCCGCAGGC CCGTGGCCGGGCTGCGCTGGCCGT GGC ACGCCCGGTTGGGCACGGCCGCGG TGTGCTGGCGGCTGC MSMEG_0995 1066335 - 1066994 + | glycosyl transferase, family protein 2 MSMEG_0996 1066994 - 1067647 + | hypothetical protein MSMEG_0997 1067651 - 1068280 + | hypothetical protein TERM 398 1068335 - 1068313 - f 74 -2.5 -4.83169 | overlap 1068314 AGGGCGGGAGAAAAA CCGGCCCCG TTGCG CGGCACCGC GATCACCGCGAGAGT MSMEG_0998 1068322 - 1069431 + | oxidoreductase, molybdopterin binding MSMEG_0999 1071212 - 1069848 - | integral membrane protein MSMEG_1000 1069356 - 1069922 + | hypothetical protein TERM 399 1070056 - 1070082 + gF 74 -13 -3.25823 | gap 1 CCGATCACCAGCATC GGCAGGCCCGG ATTGCG CCGGGCC-GCC TTGATGTCGAACACC MSMEG_1001 1071264 - 1072121 + | acetyltransferase, gnat family protein, putative MSMEG_1002 1072393 - 1073094 + | IS1096, tnpR protein MSMEG_1003 1074424 - 1073102 - | IS1096, tnpA protein MSMEG_1005 1074818 - 1075633 + | methyltransferase type 11 TERM 400 1076328 - 1076354 + G 72 -14.4 -3.16564 | opp_overlap 1076322 AACAACGTACTGCTG CGCCGTGAGGTC CCC GAGCTCGCGGCG TTCATCGACTGGGAG MSMEG_1006 1075656 - 1076717 + | aminoglycoside phosphotransferase MSMEG_1007 1077507 - 1076746 - | transport protein MSMEG_1008 1077699 - 1078190 + | hypothetical protein MSMEG_1009 1079770 - 1078286 - | cytochrome p450 TERM 401 1079847 - 1079862 + H 81 -7.6 -4.54727 | overlap 1079858 ATCTTGGATGTCATA CTTGAC GCAT GTCAAG TTTTGATTTGGCGCG MSMEG_1010 1079902 - 1080561 + | transcriptional regulator, TetR family protein MSMEG_1011 1080585 - 1081448 + | short chain dehydrogenase MSMEG_1012 1082986 - 1081451 - | alkaline phosphatase MSMEG_1013 1084272 - 1083088 - | hypothetical protein dinB 1085353 - 1084283 - | DNA polymerase IV MSMEG_1015 1085972 - 1085358 - | transcriptional regulator, TetR family protein MSMEG_1016 1086080 - 1086643 + | secreted protein TERM 402 1086670 - 1086705 + F 100 -24.1 -3.83026 | gap 1, opp_overlap 1086693 ACGTTTTCTCTCCAA GCCGCCGGCGCGGGTC CGAAC GACCC-CGCCGGCGGC TTTGCTGTCCGGGGG TERM 403 1086986 - 1086956 - f 85 -16.8 -3.06796 | opp_overlap 1086957 CCGGAGCGCAGCGAA CCCGGCCGAGTCGG TTT CCGAACCGGCCGGA TGGCTGGCCCGGATG MSMEG_1017 1087117 - 1087356 + | glutaredoxin MSMEG_1019 1087851 - 1089971 + | ribonucleotide-diphosphate reductase subunit alpha TERM 404 1089994 - 1090040 + T 100 -20.3 -3.66178 | AGTTTTTCGCCGAGA GTGCGGTTTCATACGTGACAC GCCGA GTGTCGCGGATGGGACCGCAC TTTCGCGTTGAGCGG TERM 405 1091229 - 1091214 - T 73 -11.8 -3.34715 | overlap 1091212 GACCCTCGCCAAACA GGCCGC CCGC GCGGCC GCAGGCAAGGTCGCG MSMEG_1021 1091694 - 1091275 - | glyoxalase/bleomycin resistance protein/dioxygenase MSMEG_1022 1092091 - 1091864 - | hypothetical protein MSMEG_1023 1091966 - 1093375 + | integral membrane transporter MSMEG_1024 1093372 - 1093515 + | hypothetical protein MSMEG_1026 1093566 - 1094417 + | putative acetyltransferase MSMEG_1025 1094964 - 1094389 - | TetR-family protein transcriptional regulator TERM 406 1094920 - 1094935 + g 71 -11.8 -3.63782 | opp_overlap 1094904, overlap 1094926 1094928 CGCCTGCTCGTTGCG GCGCGC GTCG GCGCGC TTTCGCGTCGTCTTG TERM 407 1094988 - 1095034 + H 71 -13.8 -2.78384 | opp_overlap 1094991, overlap 1094991 CCTCTCGTCCCTTGA TAAGCGGAACGACGCTCCGTAT CGT AGGGGGAGCATTGTTCCGCTTA TATGGTGCCAGGCGG TERM 408 1094991 - 1095031 + H 72 -11.1 -3.54475 | opp_overlap 1094991, overlap 1094988 CTCGTCCCTTGATAA GCGGAACGACGCTCCGTAT CGT AGGGGGAGCATTGTTCCGC TTATATGGTGCCAGG TERM 409 1095284 - 1095314 + G 71 -9.6 -3.78775 | overlap 1095285 CGCTACTGTCGGCGC TCGCGGCGCAGACG AAG CGTCTGCGTATCGG TTTGATGGTGACCAG MSMEG_1027 1095088 - 1095966 + | hypothetical protein TERM 410 1096017 - 1095984 - T 100 -19.1 -3.57263 | opp_overlap 1095984 1095986 ACCGCGAGTGTGAAA CCTCTGCGAAAAATC GGCA GATTTCTCGCAGAGG TTTCACACTCGTGAG TERM 411 1095984 - 1096017 + T 91 -16.9 -3.58343 | opp_overlap 1095984, overlap 1095986 ACCGCGAGTGTGAAA CCTCTGCGAAAAATC GGCA GATTTCTCGCAGAGG TTTCACACTCGTGAG MSMEG_1028 1097223 - 1096036 - | geranylgeranyl reductase TERM 412 1097104 - 1097118 + g 70 -9.2 -3.85698 | GCCGCACGGCTTGTC GCGGGG GAA CTCCGC TTTGTCCAGGACGAC TERM 413 1097308 - 1097298 - H 72 -8.2 -4.17048 | opp_overlap 1097295 1097298 1097298, overlap 1097299 GTGGCGGGAAAACAA CCGG CCA CCGG GGGTGATCGCGTGTT MSMEG_1029 1097374 - 1098111 + | transcriptional regulatory protein TERM 414 1098716 - 1098741 + G 71 -11.1 -3.55444 | GGCGCGGCTTTTCAC TCGGCGCAGTG GGAC CACAGCGTCGA TTTGCGCGGTAAGCG MSMEG_1030 1098227 - 1099726 + | monooxygenase MSMEG_1031 1099821 - 1100336 + | hypothetical protein MSMEG_1032 1100390 - 1100539 + | hypothetical protein nrdF 1100553 - 1101527 + | ribonucleotide-diphosphate reductase subunit beta TERM 415 1101541 - 1101507 - f 71 -12 -3.1855 | GCCGTCAACACCGAA GACGAGGACTGGGACT TCT AGACCCGGTCCACGCC GTGCACGCAGGAACC MSMEG_1034 1101597 - 1102979 + | putative esterase family protein MSMEG_1035 1102979 - 1104559 + | hypothetical protein TERM 416 1106155 - 1106130 - T 100 -21.9 -4.13767 | opp_overlap 1106130 CCCGTGACGGCAAAA GGCAGCCGGCC CGGG GGCCGGCTGCC TTTTGTGGATGACGT TERM 417 1106130 - 1106155 + T 100 -21.9 -4.42653 | opp_overlap 1106130 CCCGTGACGGCAAAA GGCAGCCGGCC CGGG GGCCGGCTGCC TTTTGTGGATGACGT MSMEG_1037 1107219 - 1106170 - | alcohol dehydrogenase, zinc-containing MSMEG_1038 1107682 - 1107407 - | GTP cyclohydrolase II TERM 418 1107588 - 1107540 - G 70 -14.7 -2.82516 | gap 3, opp_overlap 1107532 CCGGTGATCAGCACA CCGCCGGTCTGCGATTCCTGCCGG CCTG CCAGCAGG-AT-GC-GTCCGGCGG CGACCTCGTCGTTCA MSMEG_1039 1108765 - 1107692 - | periplasmic binding protein TERM 419 1110856 - 1110903 + G 82 -15.6 -3.40403 | gap 1, overlap 1110857 1110882 GGCACAAGGTCGAGC TGCGCAACGTCGAGCAGGTCGTG ATC CGCGGCCGGCTC-ACGTTGGGCG TTCTGGTGGCCGCGC TERM 420 1110857 - 1110902 + G 73 -16.9 -2.64099 | gap 1, overlap 1110856 1110882 GCACAAGGTCGAGCT GCGCAACGTCGAGCAGGTCGTG ATC CGCGGCCGGCTC-ACGTTGGGC GTTCTGGTGGCCGCG TERM 421 1111783 - 1111765 - g 74 -16 -2.81133 | TACCGATGGAGCAGA CCGTCGCC GTC GGCGACGG CGCCAACGACATCGA serB 1110747 - 1111988 + | phosphoserine phosphatase TERM 422 1112227 - 1112209 - g 85 -16 -3.60627 | CCAGCCGAGGCCAAA CGGTGCCC GGC GGGCACCG TGGAGAAGTTCGAGG MSMEG_1042 1112116 - 1112409 + | hypothetical protein MSMEG_1043 1113850 - 1112411 - | GntR-family protein transcriptional regulator MSMEG_1044 1113914 - 1114060 + | hypothetical protein MSMEG_1045 1114057 - 1114752 + | integral membrane protein MSMEG_1046 1114707 - 1115555 + | ABC-type molybdenum transport system, ATPase component MSMEG_1047 1115548 - 1116369 + | nudix hydrolase MSMEG_1048 1116366 - 1117073 + | enoyl-CoA hydratase MSMEG_1049 1117108 - 1118088 + | methyltransferase, UbiE/COQ5 family protein TERM 423 1118148 - 1118191 + G 83 -20.2 -2.78463 | TCGGCGGCAGGCAGG CAGGCGCTCGACGAGGCCGG GAAA CTGGCCCTGTCGGGCGCCCG TCTGGTCAACGACAT MSMEG_1050 1118097 - 1119260 + | SAM-dependent methyltransferase TERM 424 1119285 - 1119301 + F 70 -7.9 -3.95584 | opp_overlap 1119285 1119286, overlap 1119280 ACGCTTGAATCGAAA TGCCGGC GCG GTCGGCG TTTGGTTGATCGCCC TERM 425 1119920 - 1119941 + G 81 -13.1 -3.9461 | CTACCAGAACTTCGC GATCACCGA CGAT TCGGTGATC TTCTTCTTCGACCGC MSMEG_1051 1119333 - 1120034 + | immunogenic protein MPB64/MPT64 MSMEG_1052 1121610 - 1120066 - | amino acid carrier protein MSMEG_1054 1121617 - 1121739 + | hypothetical protein MSMEG_1053 1123011 - 1121728 - | hypothetical protein TERM 426 1122389 - 1122349 - G 79 -14.5 -3.28712 | GGTCTGGCCGGAGAA CGCGGGCGCCGCCGCGACG GGG CACCGCGACCGGGCCAGCG GGCAGTCGGCCAGAC TERM 427 1122849 - 1122863 + g 72 -5.6 -4.44245 | overlap 1122851 CCGCGCGCAGCGACT GGGCTC CGG GAGCAC TTTTGTAGCTGCTGT MSMEG_1055 1123108 - 1123851 + | hexapeptide transferase family protein fni 1124625 - 1125650 + | isopentenyl pyrophosphate isomerase MSMEG_1058 1125683 - 1126309 + | IS1096, tnpR protein MSMEG_1059 1127639 - 1126317 - | IS1096, tnpA protein MSMEG_1060 1128130 - 1127726 - | putative Lsr2 protein MSMEG_1061 1128977 - 1128363 - | phosphohydrolase MSMEG_1062 1130057 - 1129017 - | O-succinylbenzoic acid--CoA ligase MSMEG_1063 1130476 - 1130153 - | hypothetical protein MSMEG_1064 1130758 - 1132014 + | phosphate/sulphate permease MSMEG_1065 1132030 - 1132308 + | hypothetical protein MSMEG_1066 1132310 - 1132621 + | hypothetical protein MSMEG_1067 1133010 - 1132639 - | hypothetical protein TERM 428 1132703 - 1132743 + g 73 -12.6 -3.45571 | gap 2, overlap 1132696 AAGATCAGCGTGATG CCGTCGGGGTCGGTCACGTG CAT CTCGTG-CAGACCCC-ACGG TTCCTGTTTGGCCGG MSMEG_1068 1134474 - 1133059 - | regulatory protein MSMEG_1069 1134639 - 1136105 + | amino acid permease-associated region MSMEG_1070 1136102 - 1136797 + | 3-oxoacyl-[acyl-carrier-protein] reductase MSMEG_1071 1136794 - 1137555 + | 3-oxoacyl-[acyl-carrier-protein] reductase speB 1137579 - 1138550 + | agmatinase MSMEG_1074 1138540 - 1139403 + | polysaccharide deacetylase TERM 429 1139423 - 1139403 - T 71 -10.3 -3.64716 | opp_overlap 1139402 1139411 1139419, overlap 1139401 CCAGCCGGGAAAATA GGCCGGCGC CCG ACGCCGTCC GGTTGTGCCGACTGA MSMEG_1073 1140298 - 1139384 - | short chain dehydrogenase menB 1141330 - 1140401 - | naphthoate synthase MSMEG_1076 1141429 - 1141704 + | hypothetical protein TERM 430 1141778 - 1141727 - T 100 -25.2 -3.12351 | gap 1, opp_overlap 1141764 CGGGTCGAGACGGAA CACCGGGCACCGTCCGG-CGAGTGC TTC GAACTCGTCCGGATGGGGCCCGGTG ACCAGTCCCGCGTTC MSMEG_1077 1142155 - 1141706 - | hypothetical protein MSMEG_1078 1142866 - 1142177 - | hydrolase MSMEG_1079 1143028 - 1143432 + | hypothetical protein MSMEG_1080 1143429 - 1145873 + | large subunit of N,N-dimethylformamidase MSMEG_1081 1145899 - 1146657 + | hypothetical protein MSMEG_1082 1146756 - 1147487 + | putative response regulator TERM 431 1147504 - 1147528 + T 85 -16.4 -3.05819 | GGCGGTCCACCAGCA CCGGGTGCCC GACAG GGGCGCCCGG TGTTCACGCTGTCTG MSMEG_1083 1147696 - 1147565 - | hypothetical protein MSMEG_1084 1147718 - 1149322 + | peptide/opine/nickel uptake family protein ABC transporter, periplasmic substrate-binding protein, putative MSMEG_1085 1149333 - 1150292 + | dipeptide transport system permease protein DppB MSMEG_1086 1150289 - 1151224 + | ABC transporter permease protein gatA 1152901 - 1154301 + | glutamyl-tRNA(Gln)/aspartyl-tRNA(Asn) amidotransferase, A subunit MSMEG_1089 1154316 - 1154507 + | hypothetical protein TERM 432 1155324 - 1155309 - g 75 -4.6 -4.56597 | overlap 1155312 TGTGGCGGGGAAAAA GATCGG CATC CCGGTC AACTACTACACCGAC MSMEG_1090 1154545 - 1155951 + | amidase ureE 1155953 - 1156411 + | urease accessory protein UreE MSMEG_1092 1156408 - 1157070 + | urease accessory protein UreF MSMEG_1093 1157081 - 1157737 + | bifunctional urease subunit gamma/beta ureC 1157739 - 1159445 + | urease subunit alpha ureG 1159442 - 1160059 + | urease accessory protein UreG MSMEG_1096 1160056 - 1160871 + | urease accessory protein UreD, putative MSMEG_1097 1160901 - 1161584 + | glycosyl transferase, group 2 family protein MSMEG_1098 1163274 - 1161655 - | acyl-CoA synthetase TERM 433 1162582 - 1162570 - G 71 -10.5 -3.71848 | overlap 1162571 CGTCGGCACGAAGAA CGCCG CAC CGGCG TGCGACAGCGGCGTG MSMEG_1099 1163758 - 1163456 - | hypothetical protein TERM 434 1163708 - 1163733 + gr 70 -8.9 -3.86822 | AACGTTCAACGTGCC GCGACCGCC CGCGCGTC GGCGGCCGC TTTCTCCGCCAGTTC MSMEG_1100 1164150 - 1163698 - | DGPFAETKE domain-containing protein MSMEG_1101 1164280 - 1165446 + | hypothetical protein MSMEG_1102 1165456 - 1167066 + | twin-arginine translocation pathway signal MSMEG_1103 1167087 - 1168052 + | O-succinylbenzoate synthase TERM 435 1168237 - 1168221 - f 79 -2.1 -5.03715 | overlap 1168210 1168207 ACCAGGGCGAAAAAA CGCCCGA ATT TCCGCCG TGGCGTTACGCACGC MSMEG_1104 1168409 - 1168600 + | hypothetical protein MSMEG_1106 1169847 - 1170854 + | transcriptional regulator, AraC family protein MSMEG_1107 1170870 - 1171601 + | isonitrile hydratase, putative MSMEG_1108 1171579 - 1172457 + | hydrolase, alpha/beta fold family protein MSMEG_1109 1172457 - 1174100 + | 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylic acid synthase/2-oxoglutarate decarboxylase MSMEG_1110 1174103 - 1174594 + | transmembrane protein MSMEG_1111 1175296 - 1174598 - | hypothetical protein MSMEG_1113 1175363 - 1176490 + | glycosyl transferase MSMEG_1112 1178451 - 1176487 - | aconitate hydratase TERM 436 1177210 - 1177256 + g 76 -13.7 -3.53012 | gap 1 GTTGTCCTTCGCCCA CTGACGCGG-ATCGGTGATCAC ACCG GTGATCGCCGAGGCCGCGGCCG TTTCCGGAGAGCACA MSMEG_1114 1179403 - 1178579 - | short chain dehydrogenase ubiE 1179533 - 1180222 + | ubiquinone/menaquinone biosynthesis methyltransferase MSMEG_1116 1181715 - 1180363 - | gamma-glutamylisopropylamide synthetase TERM 437 1180542 - 1180502 - G 70 -9 -3.85698 | gap 2, opp_overlap 1180498 1180503 1180526, overlap 1180503 GGGCTGTCGTAGAAA GCGTCGAGCGCTTCACCGAG TGA CTCGG-GCAGCGGCCGAC-C GATCTTCTCGGTGTA TERM 438 1181380 - 1181365 - G 78 -6.1 -4.62336 | AGGTGACGCGAAAAA CGGTG TGCCGT CACCG GTCACGACATCGGCG MSMEG_1117 1181811 - 1182530 + | transcriptional regulator TERM 439 1182769 - 1182825 + G 79 -7.2 -4.42653 | gap 2 CGATCATGGTGGGTC TCGGCACGGGTGTCGGTACGCCTGCGGG CTT CCTGTTGGCA-ACGGTCACCC-TGTCGA TTTTCTCGGTCGGAT MSMEG_1118 1182618 - 1184153 + | amino acid permease TERM 440 1184796 - 1184775 - g 78 -15.9 -3.06183 | CCCATTCCTACGTAA TCGGCGTGC AGTG GCACGCCGA GCGGGACGACGGAAC MSMEG_1119 1184153 - 1184869 + | glutamine amidotransferase, class I MSMEG_1120 1184860 - 1185837 + | nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase MSMEG_1121 1185840 - 1186217 + | hypothetical protein MSMEG_1122 1186426 - 1186298 - | hypothetical protein MSMEG_1123 1186442 - 1187440 + | cobalamin synthesis protein MSMEG_1124 1187553 - 1187897 + | putative ferredoxin FdxA MSMEG_1125 1187897 - 1188550 + | regulatory protein, ArsR MSMEG_1126 1188580 - 1188864 + | hypothetical protein MSMEG_1127 1188880 - 1189476 + | transmembrane protein TERM 441 1189529 - 1189489 - T 100 -18.4 -5.4833 | overlap 1189490 TGAGCGAATAAAAAA GGGAGTACCGGCGCAG GAACCCAGA CTGCGCCGGTACTCCG TGCACCCGCCCGCAT TERM 442 1189528 - 1189490 - T 100 -21.9 -3.87914 | overlap 1189489 GAGCGAATAAAAAAG GGAGTACCGGCGCAG GAACCCAGA CTGCGCCGGTACTCC GTGCACCCGCCCGCA MSMEG_1128 1189771 - 1189652 - | hypothetical protein TERM 443 1189868 - 1189898 + H 90 -15.4 -3.5394 | opp_overlap 1189876, overlap 1189856 1189869 AGGAGTTTGTCGGAT CCGGACAACGCGAC GCC GCCGCGTTGTCCGA TTTCCGCAACCCTTT TERM 444 1189869 - 1189897 + H 90 -18.9 -2.72043 | opp_overlap 1189876, overlap 1189868 1189856 GGAGTTTGTCGGATC CGGACAACGCGAC GCC GCCGCGTTGTCCG ATTTCCGCAACCCTT MSMEG_1129 1189972 - 1191243 + | D-amino-acid dehydrogenase TERM 445 1192691 - 1192650 - g 74 -15.1 -3.05596 | gap 1 CACCGCCGCACTGAA CGCA-GGCAGGGTCGACCAC CTG GTGTACGACCCGGCCGTGCG CTACGTGGGGACCGT MSMEG_1130 1191772 - 1192899 + | hypothetical protein MSMEG_1131 1192990 - 1193475 + | tryptophan-rich sensory protein MSMEG_1132 1194796 - 1193567 - | FAD binding domain-containing protein MSMEG_1133 1194836 - 1195825 + | bifunctional short chain isoprenyl diphosphate synthase MSMEG_1134 1195912 - 1196799 + | heat shock protein HtpX TERM 446 1196832 - 1196882 + F 93 -17.2 -3.53444 | overlap 1196824 GTTCTCTCGCTTTTT TGC--ACCGCGAGCGAGCGTGGTTGC TCC GCAAC-ACGC-CGCTCGCGGTCGGCA TTTGACGCACGCTCG TERM 447 1196936 - 1196984 + F 71 -4.3 -4.58395 | opp_overlap 1196967, overlap 1196932 TTCGCGACGCCCGTG CGAGCCCACGTCTTTCACTGC TCGTAAC GCAGTGGCGGCCGCGAGCGCG TTTTTCCGCCGTGGC MSMEG_1135 1197495 - 1197794 + | hypothetical protein MSMEG_1136 1197841 - 1198365 + | hypothetical protein MSMEG_1137 1199806 - 1198367 - | amino acid permease-associated region MSMEG_1138 1200961 - 1199825 - | alcohol dehydrogenase 1 MSMEG_1139 1201113 - 1201682 + | transcription regulator TERM 448 1201718 - 1201691 - T 84 -14.2 -3.57144 | opp_overlap 1201677, overlap 1201692 1201705 CGGCTGAGCCCGAAA CGCACAGCTCAG AACC CCGAGCTGTGCA CCTCGTGGCCGGTCT TERM 449 1201717 - 1201692 - T 78 -15.5 -2.74144 | opp_overlap 1201677, overlap 1201691 1201705 GGCTGAGCCCGAAAC GCACAGCTCAG AACC CCGAGCTGTGC ACCTCGTGGCCGGTC MSMEG_1140 1202724 - 1201699 - | NAD(P)H-dependent glycerol-3-phosphate dehydrogenase TERM 450 1202799 - 1202847 + H 86 -16.1 -3.18264 | opp_overlap 1202841, overlap 1202793 1202800 GACCCCTGCGCCGAG TGTCGGCTTCTGTGCGAGATTCC ACA GGGATGTCGCACACAAGCCAACG TTCGTCAGTGGCAAA TERM 451 1202800 - 1202846 + H 83 -17.4 -2.50816 | opp_overlap 1202841, overlap 1202793 1202799 ACCCCTGCGCCGAGT GTCGGCTTCTGTGCGAGATTCC ACA GGGATGTCGCACACAAGCCAAC GTTCGTCAGTGGCAA TERM 452 1203127 - 1203111 - H 70 -5.8 -4.25104 | gap 1 GTGGGCCGAGGAAAA CGGGAGC CAGC GC-CCCG CACGCTGCGAATTCC MSMEG_1141 1203291 - 1204160 + | ABC-transporter integral membrane protein MSMEG_1142 1204162 - 1205019 + | ABC-transporter integral membrane protein MSMEG_1143 1205021 - 1206625 + | mce related protein MSMEG_1144 1206622 - 1207677 + | virulence factor Mce family protein MSMEG_1145 1207670 - 1208710 + | virulence factor Mce family protein MSMEG_1146 1208707 - 1209828 + | virulence factor Mce family protein MSMEG_1147 1209825 - 1211105 + | mce related protein MSMEG_1148 1211102 - 1212358 + | mce related protein MSMEG_1149 1212385 - 1213071 + | hypothetical protein MSMEG_1150 1213041 - 1213862 + | hypothetical protein TERM 453 1214133 - 1214120 - g 70 -3.8 -4.3953 | overlap 1214113 CCGAATGACAACAAA GCGT TGGTCG ACGC CATGCTCGGTGACCT MSMEG_1151 1214090 - 1214695 + | DNA-binding protein MSMEG_1152 1214846 - 1216132 + | citrate-proton symporter MSMEG_1153 1216141 - 1217541 + | FAD dependent oxidoreductase MSMEG_1154 1217538 - 1218719 + | formyl-coenzyme A transferase MSMEG_1155 1218716 - 1219522 + | carnitinyl-CoA dehydratase MSMEG_1156 1219519 - 1220406 + | dihydrodipicolinate synthetase MSMEG_1157 1220407 - 1221180 + | short chain dehydrogenase MSMEG_1158 1221223 - 1222650 + | 5-oxovalerate dehydrogenase TERM 454 1223318 - 1223300 - g 74 -13.2 -3.31157 | CAACGACGAGATCAA GACCGTGA CGC TCACGGTC GTCCCGCCGGTCAAC MSMEG_1159 1222785 - 1223855 + | ABC transporter component A MSMEG_1160 1223852 - 1224655 + | ABC-type nitrate/sulfonate/bicarbonate transport system ATPase component MSMEG_1161 1224687 - 1225493 + | taurine transport system permease protein TauC MSMEG_1162 1225516 - 1226862 + | nitrilotriacetate monooxygenase component A MSMEG_1163 1226859 - 1226981 + | hypothetical protein TERM 455 1227497 - 1227535 + T 72 -13.2 -3.14564 | gap 2, overlap 1227508 CGGGTCATCGTGACC CTCGGCGCCGACGTCGCG CCGCC CGCGACC-CGG-GCCGAG TTCCTCGCGGCGTGG TERM 456 1227729 - 1227776 + T 100 -20.1 -4.13767 | opp_overlap 1227729 1227739, overlap 1227733 1227739 ACGCTCGCGCCGAAA GCAACGAAAATGCCGCTCAGA AGGGTC TCTGAGCGGCATTTTCGTCAC TTTTGGGGTAGCAGG TERM 457 1227776 - 1227729 - T 100 -25.2 -3.53091 | opp_overlap 1227729 1227733 1227739, overlap 1227739 ACGCTCGCGCCGAAA GCAACGAAAATGCCGCTCAGAA GGGT CTCTGAGCGGCATTTTCGTCAC TTTTGGGGTAGCAGG TERM 458 1227733 - 1227772 + T 100 -23.9 -2.75577 | opp_overlap 1227729 1227739, overlap 1227729 1227739 TCGCGCCGAAAGCAA CGAAAATGCCGCTCAGA AGGGTC TCTGAGCGGCATTTTCG TCACTTTTGGGGTAG TERM 459 1227739 - 1227766 + T 100 -15.7 -4.34771 | opp_overlap 1227729 1227739, overlap 1227733 1227729 CGAAAGCAACGAAAA TGCCGCTCAGA AGGGTC TCTGAGCGGCA TTTTCGTCACTTTTG TERM 460 1227766 - 1227739 - T 100 -16.4 -4.5287 | opp_overlap 1227739 1227733 1227729, overlap 1227729 CGAAAGCAACGAAAA TGCCGCTCAGAA GGGT CTCTGAGCGGCA TTTTCGTCACTTTTG MSMEG_1165 1228283 - 1227792 - | nucleotide-binding protein TERM 461 1228483 - 1228507 + r 100 -21.5 -4.14397 | ACCTGCCACCCAGGT CAGGCCCCCTC ATC GAGGGGGCCTG TTTGGTTTCTGGGGT MSMEG_1167 1229989 - 1228550 - | cytochrome P450 TERM 462 1229052 - 1229036 - G 70 -12.3 -3.32844 | opp_overlap 1229034 1229036 CTGCGGACCGGACAA CGCTTCG TCG CGAAGCG TGTTCTGCCACCGGA MSMEG_1168 1230134 - 1230784 + | putative transcriptional regulator MSMEG_1169 1230896 - 1232140 + | integral membrane transport protein TERM 463 1232164 - 1232180 + F 74 -11.5 -3.63805 | CCAGATCCTCCACGT GCTGGGC GGT GCCCGGC TTTCGGATGTGCGCT MSMEG_1170 1232200 - 1232415 + | hypothetical protein MSMEG_1171 1232927 - 1232517 - | low molecular weight phosphotyrosine protein phosphatase arsB 1234000 - 1232924 - | arsenical-resistance protein MSMEG_1173 1234368 - 1233997 - | transcriptional regulator, ArsR family protein TERM 464 1234274 - 1234299 + g 70 -14.7 -2.70932 | TTGAGTTTCACACTC ATGTCGGCGGC CTCC GCCGCCGACAG TGGTTCACGCAGCAG TERM 465 1234445 - 1234397 - R 100 -22.5 -2.66291 | gap 1, opp_overlap 1234404 CATATATCGATATCA CGGGCAAGGCCGGGGCGTGGCC TTCGGC GGTCACGCCCCGGCCTTGCT-G ATCAGCAGCAGGCCG TERM 466 1234404 - 1234439 + r 100 -25.5 -3.21099 | opp_overlap 1234397 CGATATCACGGGCAA GGCCGGGGCGTGGCC TTCGGC GGTCACGCCCCGGCC TTGCTGATCAGCAGC MSMEG_1174 1234911 - 1234447 - | cadmium inducible protein cadi MSMEG_1175 1235012 - 1235371 + | putative transcriptional regulatory protein MSMEG_1176 1235405 - 1236928 + | hypothetical protein MSMEG_1177 1238374 - 1236938 - | cytosine/purines/uracil/thiamine/allantoin permease family protein MSMEG_1178 1238701 - 1239618 + | transcriptional regulator TERM 467 1239841 - 1239790 - g 78 -9.9 -4.11216 | gap 1 CCTGGACCCCGAAAA CGCCGAACGGCCCGACGATCTCGT CGTCT ACG-GCGGGACGGGCCGCGCGGCG CGGAACTGGGCCAGC hutU 1239680 - 1241338 + | urocanate hydratase MSMEG_1180 1241335 - 1242549 + | allantoate amidohydrolase hutF 1242546 - 1243877 + | N-formimino-L-glutamate deiminase hutI 1243874 - 1245064 + | imidazolonepropionase hutH 1245061 - 1246605 + | histidine ammonia-lyase MSMEG_1184 1246704 - 1247582 + | serine esterase, cutinase family protein MSMEG_1185 1248647 - 1247625 - | transcriptional regulator, AsnC family protein TERM 468 1248934 - 1248952 + G 70 -12.4 -3.31144 | GGCGTCGCCGTCGAT GGCCCCAC GAT GTGGGGTC TTCTCCCGCTCGCCA MSMEG_1186 1248910 - 1250229 + | putative permease MSMEG_1187 1250238 - 1251833 + | N-acyl-D-aspartate deacylase MSMEG_1188 1253759 - 1251852 - | hypothetical protein TERM 469 1253468 - 1253428 - G 73 -15.9 -2.52516 | overlap 1253427 TCGGCCACCAGCAAT GCCGCGTCGGCGCCTGCGC TGC GGGCCAGCGCCGCGGCGGC CTCGGCCTCGGCGAC TERM 470 1253999 - 1253979 - g 78 -13.3 -3.5393 | ACGACGCGTCCGAAA CTGTCGCGG TGG CCACGACAG CTGCGCCATCGGTGG TERM 471 1254715 - 1254682 - g 70 -13.1 -3.35798 | gap 1, overlap 1254685 ATGGCTCACCGAGAA GACCGCGGCCGCGCGC CTT GCG-ACCACCGCGGTC GGGGTGTCCGGCGCC MSMEG_1189 1253948 - 1255630 + | hypothetical protein TERM 472 1256763 - 1256797 + G 70 -12.8 -3.27475 | overlap 1256749 1256761 TTGGCCGCGGCAGCC GCCGCAGTCGTGGTTG CGG TGGTCGCGGCTGCGGC TCTTCTCATCAAGCC MSMEG_1190 1255770 - 1257644 + | serine/threonine-protein kinase PknD TERM 473 1257691 - 1257641 - T 93 -17.9 -3.54743 | gap 2, overlap 1257642 1257645 1257683 CAGCACCAAGTACAA CTGACTTGCGGAGTTTTTCCGGCGC TCA GCGCCAGAAAAACTCCACAAA-C-G CCTGGGACTCAGGAC TERM 474 1257691 - 1257642 - T 87 -18.1 -2.72364 | gap 1, overlap 1257641 1257645 1257683 AGCACCAAGTACAAC TGACTTGCGGAGTTTTTCCGGCGC TCA GCGCCAGAAAAACTCCACAAA-CG CCTGGGACTCAGGAC TERM 475 1257689 - 1257645 - T 100 -25.3 -2.63614 | overlap 1257641 1257642 1257683 ACCAAGTACAACTGA CTTGCGGAGTTTTTCCGGCGC TCA GCGCCAGAAAAACTCCACAAA CGCCTGGGACTCAGG MSMEG_1191 1257921 - 1257700 - | hypothetical protein MSMEG_1192 1259165 - 1257963 - | M23 peptidase domain-containing protein TERM 476 1260222 - 1260197 - g 71 -10.3 -3.72576 | CTGGGCGGCAGGAAA GGGTCTGGGCG ACTA CGCCGAGGCCC CTGCCCGGCTCACCG MSMEG_1193 1259580 - 1261274 + | TROVE domain-containing protein TERM 477 1261285 - 1261312 + T 90 -15.6 -3.6471 | overlap 1261286 TCTAGCGGCACGGGC GGGGGTGACGGT TTCG ACCGTCACCCCG TTCTGTCATTTCCGG TERM 478 1261286 - 1261311 + T 90 -19.1 -2.78344 | overlap 1261285 CTAGCGGCACGGGCG GGGGTGACGGT TTCG ACCGTCACCCC GTTCTGTCATTTCCG MSMEG_1194 1261740 - 1261318 - | hypothetical protein MSMEG_1195 1261917 - 1263128 + | hypothetical protein MSMEG_1196 1265188 - 1263197 - | SNF2 domain-containing protein MSMEG_1197 1265509 - 1265252 - | transcriptional regulator, LuxR family protein MSMEG_1198 1265675 - 1266436 + | hypothetical protein MSMEG_1199 1268882 - 1266507 - | hypothetical protein TERM 479 1270008 - 1270041 + G 82 -14.5 -3.40403 | gap 1, overlap 1270029 ACGCGCGCGCGGGTG CCGCGGCGCGTCGCGG TGA TCGCGG-GCGCCACGG TTCTGGTGGCGGCGC MSMEG_1200 1269105 - 1270931 + | serine/threonine-protein kinase PknD MSMEG_1201 1271619 - 1270939 - | hypothetical protein MSMEG_1202 1271693 - 1271971 + | hypothetical protein TERM 480 1272014 - 1271986 - f 74 -11.6 -3.60525 | opp_overlap 1271989 GCCAGGTAGAGAGAA GGGCCCGGACGC CGCGC GCGTCCGGGTTC TTTGTGCTTGAGGCG TERM 481 1271989 - 1272011 + F 95 -16.3 -4.1523 | opp_overlap 1271986 AGGTAGAGAGAAGGG CCCGGACGC CGCGC GCGTCCGGG TTCTTTGTGCTTGAG MSMEG_1204 1272165 - 1273415 + | 3-oxoacyl-(acyl carrier protein) synthase II MSMEG_1203 1274296 - 1273412 - | methoxy mycolic acid synthase 1 MSMEG_1205 1275219 - 1274296 - | cyclopropane-fatty-acyl-phospholipid synthase 1 TERM 482 1275316 - 1275339 + r 78 -4.5 -4.72272 | TGGACCGTGAAGGTT CTTTTGGCG ATCCTG CGCCCAGAG TTTTTGCTGCGGCAA TERM 483 1275371 - 1275420 + r 74 -13 -3.21276 | opp_overlap 1275379, overlap 1275373 1275380 CGTTCCGGCTGCGCG GC-GACGAACTGAGCCCGGACCCT GTCC AGGGTCCGGGCTCA-TGTGTCAGG TCTTATCGCCGCCGA TERM 484 1275373 - 1275422 + r 71 -12.5 -3.28712 | gap 4, opp_overlap 1275379, overlap 1275371 1275380 TTCCGGCTGCGCGGC GA-C-GA-AC-TGAGCCCGGACCCT GTCC AGGGTCCGGGCTCATGTGTCAGGTC TTATCGCCGCCGAAG TERM 485 1275412 - 1275379 - R 100 -21.1 -3.14132 | opp_overlap 1275371 1275373 1275380 CTGCGCGGCGACGAA CTGAGCCCGGACCCT GTCC AGGGTCCGGGCTCAT GTGTCAGGTCTTATC TERM 486 1275380 - 1275411 + r 100 -24.6 -2.92003 | opp_overlap 1275379, overlap 1275371 1275373 TGCGCGGCGACGAAC TGAGCCCGGACCCT GTCC AGGGTCCGGGCTCA TGTGTCAGGTCTTAT MSMEG_1206 1275573 - 1275439 - | hypothetical protein TERM 487 1275494 - 1275511 + g 81 -12.7 -3.84587 | overlap 1275454 GCGCTGTCAGTTTTC GCGCGCT TCTC AGCGCGC TTCTGTTTGAGTGAT TERM 488 1275740 - 1275751 + H 70 -5.8 -4.30161 | CGGTCGATCCAACGC GCCT GCAG AGGC TTTGATTTTGTCTGC MSMEG_1207 1276157 - 1277335 + | glycosyltransferase, group I MSMEG_1208 1277332 - 1278369 + | glycosyltransferase, group I MSMEG_1209 1278387 - 1279841 + | glycosidase MSMEG_1210 1280711 - 1279842 - | hypothetical protein TERM 489 1280084 - 1280103 + g 70 -3.4 -4.39133 | overlap 1280045 CGGTGGCCTGCGGAT CGGGCGGC TCCG GCTCCTCG TTTTCGTCCTTCTTG MSMEG_1211 1280838 - 1281929 + | Fatty acid desaturase MSMEG_1212 1282273 - 1282482 + | hypothetical protein TERM 490 1282501 - 1282529 + F 100 -21.8 -4.74706 | GGGGATGAGGGGGGA GAGCCCGGACCC ACACA GGGTCCGGGCTC TTTTTCGATGTTCAC TERM 491 1283710 - 1283726 + G 72 -15.1 -2.87132 | CGTGGCTGCCGTTCG GCGGCGG CAA CCGCCGC TGTCTCGGCGCCACG MSMEG_1213 1282629 - 1283942 + | cytochrome P450 monooxygenase MSMEG_1214 1283977 - 1284996 + | oxidoreductase MSMEG_1215 1285067 - 1285705 + | serine/threonine-protein kinase PknE, putative MSMEG_1216 1287002 - 1285707 - | ABC-type transport system periplasmic substrate-binding protein MSMEG_1217 1287748 - 1287035 - | ABC-type transport system ATP-binding protein I MSMEG_1218 1288457 - 1287741 - | ABC-type transport system ATP-binding protein II MSMEG_1219 1289461 - 1288454 - | ABC-type transport system permease protein II MSMEG_1220 1290333 - 1289458 - | ABC-type transport system permease protein I MSMEG_1221 1290581 - 1291009 + | rifampin ADP-ribosyl transferase MSMEG_1222 1292839 - 1291202 - | ISMsm6, transposase TERM 492 1291685 - 1291712 + g 72 -6.8 -4.25104 | overlap 1291680 GGCCACGATGGCCCG GGCCCGGGCTTC TTGA GCGGCCAGGGTC TTTTGATCACGGCGG MSMEG_1224 1292948 - 1293064 + | rifampin ADP-ribosyl transferase MSMEG_1223 1293362 - 1293051 - | hypothetical protein TERM 493 1294042 - 1294054 + r 70 -5.5 -4.32049 | GAGTACGACTCATAC TCGCG CCT TGCGA TTTTGATGAGTTCTG MSMEG_1225 1295882 - 1294590 - | hypothetical protein TERM 494 1295828 - 1295858 + g 86 -10.3 -4.62471 | overlap 1295819 CCTGTTGGGACGACG CGCGCCGGCGATC CTTCT GCTTGGCGGCGCG TTTTTGGCGATTGCG MSMEG_1226 1295995 - 1296870 + | sulfatase-modifying factor 1 TERM 495 1297053 - 1297092 + F 81 -17 -2.78384 | gap 1 CTGCGACGCGCGAGT ACGCCGGCAC-CCGGGCCG ATG CGGCCCGGTGGGCCCGCGA TGTGCTGCGCGGCAA MSMEG_1227 1297094 - 1297819 + | transcriptional regulator, GntR family protein MSMEG_1228 1297882 - 1299234 + | sulfatase gyrB 1299255 - 1301174 + | DNA gyrase subunit B MSMEG_1230 1301498 - 1301175 - | hypothetical protein TERM 496 1301228 - 1301259 + g 83 -15.1 -3.57792 | gap 1, overlap 1301229 CGGCGAGGATCGTGA CGCCGGCCGCCCGG ATGTA CCGG-CGGCCGGCA TTTCCGCGTGGGTGG TERM 497 1301229 - 1301258 + g 81 -18.6 -2.74461 | gap 1, overlap 1301228 GGCGAGGATCGTGAC GCCGGCCGCCCGG ATGTA CCGG-CGGCCGGC ATTTCCGCGTGGGTG MSMEG_1231 1301863 - 1301495 - | inner membrane protein YidH MSMEG_1232 1302007 - 1303464 + | ABC transporter substrate-binding protein MSMEG_1234 1304379 - 1305128 + | taurine import ATP-binding protein TauB TERM 498 1306379 - 1306422 + G 71 -10.1 -3.7732 | gap 1, overlap 1306381 CGGTGTCCGCCGAGC CCGGGCCCGACGACTCCCGG ACCTA CCGGGTG-CGTGGGGACCTG TTCTTCGTGTCGAGC MSMEG_1235 1305154 - 1306650 + | sulfate permease TERM 499 1306661 - 1306690 + T 93 -18.5 -3.35679 | overlap 1306662 TGTAGTGGTGTTCGA TGCGGGGCCGCCT TTTC GGGCGGCCCCGCC TTCTGCGTCACGGCG TERM 500 1306662 - 1306689 + T 100 -22 -2.61264 | overlap 1306661 GTAGTGGTGTTCGAT GCGGGGCCGCCT TTTC GGGCGGCCCCGC CTTCTGCGTCACGGC MSMEG_1236 1307345 - 1306698 - | Mpr protein TERM 501 1307129 - 1307158 + g 77 -14.9 -3.21276 | overlap 1307127 1307147 CCTCTTTCGTAGGGG CCGCGGCTGGCGC CTGG GCGACGGTCGCGG TGTTCTCGGCCGGCG MSMEG_1237 1307514 - 1307831 + | hypothetical protein MSMEG_1238 1308315 - 1310015 + | type III restriction enzyme, res subunit MSMEG_1239 1311592 - 1310225 - | ISMsm4, transposase MSMEG_1240 1311730 - 1313316 + | hypothetical protein TERM 502 1314087 - 1314112 + G 82 -3.3 -5.01732 | gap 1 CGATTCGTGTACAAA TCTCGGCGGTTC GGG GAAGTG-CGAGA TTTTTTGGCCGCGTT MSMEG_1241 1313313 - 1314251 + | hypothetical protein iscS 1314552 - 1315712 + | cysteine desulfurase IscS MSMEG_1243 1315709 - 1316782 + | hypothetical protein MSMEG_1244 1316779 - 1320237 + | hypothetical protein MSMEG_1245 1320230 - 1321078 + | phosphoadenosine phosphosulfate reductase TERM 503 1321712 - 1321726 + G 73 -7 -4.12911 | GCCGTCGATGCGTAT CGCCGG CAC CCGGAG TTGTTTATGCGTTTC MSMEG_1246 1321231 - 1322667 + | hypothetical protein MSMEG_1247 1323156 - 1323980 + | hypothetical protein TERM 504 1324618 - 1324607 - g 72 -5.8 -4.2803 | opp_overlap 1324607 TATCTTAACTCAAAA GGTC ACAC GACC TGTCGTCACGAGATT MSMEG_1248 1324238 - 1324906 + | hypothetical protein MSMEG_1249 1326046 - 1325180 - | ISMsm7, transposase orfB MSMEG_1250 1326339 - 1326043 - | ISMsm7, transposase orfA MSMEG_1251 1326988 - 1327353 + | hypothetical protein TERM 505 1332657 - 1332645 - g 78 -6.2 -4.5774 | CAGCAAGAAGGAAAA CGGC GTTCT GCCG TTGAACTTCGGTCCG MSMEG_1252 1327732 - 1333908 + | hypothetical protein TERM 506 1336037 - 1336056 + G 71 -10 -3.67775 | gap 1, overlap 1336037 CTCTGGAAGCTCGTA C-CCCGACC CTT GGTCGGGAG TTATTCGGTCCGCAT MSMEG_1253 1334462 - 1337860 + | hypothetical protein MSMEG_1254 1337844 - 1342847 + | DEAD/DEAH box helicase TERM 507 1345100 - 1345083 - g 83 -4.7 -4.82901 | overlap 1345084 CGCGGTGGACAAAAA CGTCCCG ACAC CGGGCCA ACCACTTGTGATGAC MSMEG_1255 1343125 - 1345338 + | UvrD/Rep helicase TERM 508 1345385 - 1345372 - g 71 -9.5 -3.7645 | ACGGAACCAACAGAA CCGCC TACG GGCGG TGTCGCACCCAACCC MSMEG_1256 1345348 - 1345767 + | hypothetical protein MSMEG_1257 1346160 - 1346861 + | IS1096, tnpR protein MSMEG_1258 1348191 - 1346869 - | IS1096, tnpA protein MSMEG_1259 1347910 - 1348326 + | hypothetical protein MSMEG_1260 1350015 - 1348648 - | hypothetical protein TERM 509 1349768 - 1349805 + g 86 -14.1 -3.85817 | gap 1, opp_overlap 1349764 1349761 CCGAGGAAGGATGCT GC-TCCGGCGGCGAGGCC GGC GGCATTGCCGACGGACGC TTTGTCCACGCCGAT MSMEG_1261 1350265 - 1351347 + | hypothetical protein MSMEG_1262 1351351 - 1351716 + | hypothetical protein MSMEG_1263 1352833 - 1352309 - | hypothetical protein TERM 510 1352683 - 1352659 - G 72 -4.9 -4.41616 | gap 1, overlap 1352661 ACGCTGCCAAACAAA GCC-CAGCCG AAACGG CGGCAGTGGC TGCATAAGGGCGAGC MSMEG_1264 1353580 - 1353978 + | prophage Lp1 protein 5 MSMEG_1265 1355633 - 1354095 - | hypothetical protein TERM 511 1354736 - 1354776 + g 72 -14.8 -2.87132 | gap 2 GGTTGTCGTAGTTGG TGGTC-AC-CGCCTCGCTGC TCG GCAGCGAGGCGAGCAGACCG TGTGTCAGCGAGAAA MSMEG_1266 1356374 - 1355685 - | ankyrin repeat-containing protein MSMEG_1268 1357886 - 1358554 + | nudix hydrolase MSMEG_1269 1359566 - 1358568 - | Ser/Thr protein phosphatase family protein MSMEG_1270 1359891 - 1359598 - | hypothetical protein MSMEG_1271 1360372 - 1360010 - | hypothetical protein MSMEG_1272 1361847 - 1360369 - | putative ribosylglycohydrolase MSMEG_1273 1362377 - 1362036 - | hypothetical protein MSMEG_1274 1363564 - 1362437 - | gluconolactonase MSMEG_1275 1364824 - 1363745 - | HNH nuclease, putative MSMEG_1276 1364892 - 1365188 + | hypothetical protein MSMEG_1277 1365336 - 1365533 + | hypothetical protein MSMEG_1278 1365530 - 1365922 + | death-on-curing protein MSMEG_1279 1365999 - 1367429 + | hypothetical protein MSMEG_1280 1367426 - 1368148 + | putative cytoplasmic protein MSMEG_1281 1368135 - 1371380 + | hypothetical protein MSMEG_1282 1371377 - 1372546 + | putative cytoplasmic protein MSMEG_1283 1372567 - 1372821 + | ribbon-helix-helix transcription factor, family protein MSMEG_1284 1372821 - 1373210 + | PilT domain-containing protein MSMEG_1285 1375634 - 1373229 - | TPR repeat-containing protein TERM 512 1374335 - 1374347 + g 72 -5.5 -4.3953 | overlap 1374339 GGGAAAGCTGCTCGT TGCCG AGA TGGCA TTTCTTGTACTTGCG MSMEG_1286 1377416 - 1375656 - | sulfatase family protein TERM 513 1376829 - 1376778 - G 72 -14.2 -3.14881 | gap 1, opp_overlap 1376778 1376775, overlap 1376780 1376784 GAAGCTCGCCACCAA CAGGAACG-GCCGCAGCGCGTCGGG GTC CCCGGCGCGCCGGCGCGCGTACCGG TCCTTTAGCCACGCC TERM 514 1376827 - 1376780 - G 77 -15.4 -3.13522 | gap 1, opp_overlap 1376778 1376775, overlap 1376778 1376784 AGCTCGCCACCAACA GGAACG-GCCGCAGCGCGTCGGG GTC CCCGGCGCGCCGGCGCGCGTACC GGTCCTTTAGCCACG TERM 515 1376823 - 1376784 - G 76 -13.4 -3.39449 | gap 1, opp_overlap 1376778 1376775, overlap 1376780 1376778 CGCCACCAACAGGAA CG-GCCGCAGCGCGTCGGG GTC CCCGGCGCGCCGGCGCGCG TACCGGTCCTTTAGC MSMEG_1287 1377850 - 1377413 - | cyclase/dehydrase superfamily protein TERM 516 1378349 - 1378335 - g 72 -3.5 -4.57073 | overlap 1378337 1378338 GATTTCGTCGAAAAA GATCC CCGGT GGACC CAGGGCCGGCTGCGG MSMEG_1288 1378017 - 1379666 + | hypothetical protein MSMEG_1289 1380480 - 1379677 - | hypothetical protein TERM 517 1382034 - 1382018 - g 77 -15.1 -3.14132 | opp_overlap 1382026 GTGGTGCGCTATGAA GGCCCGC GCG GCGGGCC GGGTATGCAGGAGAT ilvD 1380557 - 1382425 + | dihydroxy-acid dehydratase MSMEG_1291 1385109 - 1382428 - | putative oxidoreductase TERM 518 1382496 - 1382542 + g 95 -21.5 -3.35015 | gap 1, opp_overlap 1382496, overlap 1382498 GCTCGCGCGGACGAA CCCCGACGGCCCGCGCGATCGC GTTG GCGAGCGCGGGGG-CGACGGGG TTGTACGGTGATTCG TERM 519 1382542 - 1382496 - G 93 -21.5 -3.14132 | gap 1, opp_overlap 1382496 1382498 GCTCGCGCGGACGAA CCCCGACGGCCCGCGCGATCGC GTTG GCGAGCGCGGGGG-CGACGGGG TTGTACGGTGATTCG TERM 520 1384470 - 1384450 - G 70 -12.5 -3.28712 | GCGCGCGGTGGAGAA CGCGACGCG CGG CGCGTCGAG GTAGGTCAGCACCAG TERM 521 1384637 - 1384671 + g 70 -8.4 -3.89881 | overlap 1384638 GCCACCCGCACGGCC GCCGGTGCCCCAACTG AAG CTGTTGTGCCACCGGA TTTCTCGACGTTGCT MSMEG_1292 1385990 - 1385106 - | FAD binding domain-containing protein MSMEG_1293 1386036 - 1387940 + | xanthine/uracil permeases family protein MSMEG_1294 1387942 - 1388448 + | putative OHCU decarboxylase MSMEG_1295 1388445 - 1388762 + | transthyretin MSMEG_1296 1388764 - 1389663 + | uricase TERM 522 1390291 - 1390315 + G 72 -13.6 -3.14564 | CGCGCTGGCCCCGTG CTCGCCGTTC TCGGT GAGCGGCGAG TTGATGCGGGAGTCC MSMEG_1297 1389680 - 1391038 + | hydroxydechloroatrazine ethylaminohydrolase MSMEG_1298 1391035 - 1392369 + | guanine deaminase TERM 523 1393352 - 1393371 + G 72 -4.2 -4.56597 | gap 1, overlap 1393354 ACGGACGAGTGCAAC GG-CGTCGC TCC GCGGCGTTC TTTTTCGACGCGAAC TERM 524 1393354 - 1393368 + G 82 -9.2 -4.40561 | overlap 1393352 GGACGAGTGCAACGG CGTCGC TCC GCGGCG TTCTTTTTCGACGCG MSMEG_1299 1392514 - 1393572 + | oxidoreductase, 2OG-Fe(II) oxygenase family protein MSMEG_1300 1393703 - 1394095 + | hypothetical protein MSMEG_1301 1394284 - 1394544 + | NanT3 MSMEG_1302 1394787 - 1394954 + | alkylphosphonate uptake protein TERM 525 1394991 - 1395016 + T 100 -14.9 -4.56597 | opp_overlap 1394991 TGGTACTCATGAAAA GTGCGATATCA CCGG TGATATCGCAC TTTTTACGCAAGCAC TERM 526 1395016 - 1394991 - T 100 -14.9 -4.2828 | opp_overlap 1394991 TGGTACTCATGAAAA GTGCGATATCA CCGG TGATATCGCAC TTTTTACGCAAGCAC TERM 527 1395254 - 1395229 - T 100 -14.9 -4.25104 | GGGCGCTCACGAAAA GTGCGATATCA CCGG TGATATCGCAC TTCGAACTCATACAT MSMEG_1303 1396144 - 1395326 - | putative transcriptional regulator MSMEG_1304 1396275 - 1397318 + | rhizopine catabolism protein MSMEG_1305 1397936 - 1397328 - | TetR family protein regulatory protein TERM 528 1397975 - 1397952 - R 76 -14 -3.05844 | opp_overlap 1397949 GCGCGCAGTCTAACA GTTCCCAACT GGTC AGTTGGGAAC CGTCAGAGCTGCGCA MSMEG_1306 1399523 - 1398000 - | aldehyde dehydrogenase (NAD) family protein MSMEG_1307 1399834 - 1399532 - | EthD protein MSMEG_1308 1401571 - 1399868 - | peptidase S15 TERM 529 1402079 - 1402107 + H 79 -11.7 -3.82378 | overlap 1402083 TTGCGGAGGCCATCC CACCGATGTTGCG AAT CGCAACATCTGCG TTGTTCTCAGTGGGT TERM 530 1402083 - 1402103 + H 71 -14.1 -2.69073 | overlap 1402079 GGAGGCCATCCCACC GATGTTGCG AAT CGCAACATC TGCGTTGTTCTCAGT MSMEG_1309 1402155 - 1402271 + | hypothetical protein MSMEG_1310 1402450 - 1403853 + | TnpC protein TERM 531 1403908 - 1403894 - T 75 -7.1 -4.40237 | GAGCACACAGGAAAA GCTGG GCAGA CCAGC AACTACCGCATGCCC MSMEG_1311 1405996 - 1404005 - | oligopeptide transporter, OPT family protein TERM 532 1405985 - 1406003 + g 77 -11 -3.91911 | GGGGGTTGCAGTGCT TTCCGAGG TCA CCTCGGGA TTTCCTTCCGATGGA MSMEG_1312 1406153 - 1406749 + | hypothetical protein TERM 533 1408643 - 1408602 - g 90 -17.3 -3.44146 | opp_overlap 1408592 1408590 GGCCCCGAGAATGAA CTCGTGTTCGTCGACGCCG AAGG CGGCATCGACAAGCACGTG AAACTTCCGGCCGAC MSMEG_1313 1406859 - 1409201 + | secreted protein MSMEG_1315 1409246 - 1410160 + | transporter, small conductance mechanosensitive ion channel (MscS) family protein MSMEG_1314 1410906 - 1410157 - | hypothetical protein TERM 534 1411127 - 1411152 + r 87 -14.9 -3.6806 | GCAGTCACTTCGGAA GTGCGATATCA CCGG TGATATCGCAC TTTCGATGCATATGT prfC 1412792 - 1411176 - | peptide chain release factor 3 MSMEG_1317 1413751 - 1413062 - | transcriptional regulator MSMEG_1318 1414714 - 1413803 - | polysaccharide deacetylase family protein MSMEG_1319 1415882 - 1414728 - | Asp/Glu racemase MSMEG_1320 1417180 - 1415879 - | major facilitator superfamily protein MFS_1 TERM 535 1416523 - 1416555 + g 78 -9.8 -4.16842 | gap 1, opp_overlap 1416517, overlap 1416524 TGTAGTAGACGAGGC CCGCGCGCTCACCGG TGGA CTGGTG-GCGTGCGC TTTCTTCGCGGTGCG MSMEG_1321 1417321 - 1417941 + | 5-carboxymethyl-2-hydroxymuconate delta-isomerase MSMEG_1322 1418115 - 1419377 + | ErfK/YbiS/YcfS/YnhG family protein MSMEG_1323 1419591 - 1419878 + | hypothetical protein MSMEG_1324 1420030 - 1419914 - | hypothetical protein MSMEG_1326 1420278 - 1420427 + | hypothetical protein recD 1422088 - 1420424 - | exodeoxyribonuclease V, alpha subunit recB 1425336 - 1422085 - | exodeoxyribonuclease V, beta subunit recC 1428596 - 1425333 - | exodeoxyribonuclease V, gamma subunit MSMEG_1329 1429858 - 1428614 - | major facilitator superfamily protein MFS_1, putative TERM 536 1429613 - 1429585 - G 78 -18.1 -2.72799 | overlap 1429582 CCGCGATACACATCA GCCGGCCCAGCAG GAT CTGCCGGGCCGGG TTGCCCACGTCGGCC MSMEG_1330 1430313 - 1429855 - | MarR-family protein transcriptional regulator MSMEG_1331 1431133 - 1430426 - | enoyl-CoA hydratase TERM 537 1430453 - 1430501 + g 72 -13.8 -3.14564 | gap 1, opp_overlap 1430452 1430451 CTCGGCCGCCAAACC G-TCGATGCCCGCGCGGATGGCG GTGA CGGCGTCGGCGCGGGCCTTGAGC TTACTCGCCACATGC MSMEG_1332 1432008 - 1431151 - | hypothetical protein MSMEG_1333 1433059 - 1432067 - | hypothetical protein TERM 538 1432498 - 1432532 + g 85 -17.8 -3.14132 | TCACGCGGTGCGGAG CGTCGATCGCGACCGC GTG GCGGCCGTGCTCGACG TTGGTGAGCAGACCC MSMEG_1334 1434039 - 1433302 - | metallo-beta-lactamase family protein TERM 539 1434146 - 1434129 - H 70 -2 -4.64766 | gap 1, overlap 1434130 1434131 CGCACACGCCAAAAA CTCGCAT CGGAT ATGCG-G AATTTATTAGCGTCA MSMEG_1335 1434167 - 1434628 + | transcriptional regulator, BadM/Rrf2 family protein MSMEG_1336 1434628 - 1435863 + | flavohemoprotein, putative TERM 540 1435931 - 1435880 - f 93 -17.2 -3.59979 | gap 1, opp_overlap 1435873 1435893 1435911 1435912 1435927 TCTGTGCAGGTCAAA GCCCCTTTGGCGGCCGCGTC-AACC CGC GGTTTGGTGCGGCCGCCAGGGAGGC TGTACCCTCTTTAAG rpmG 1436204 - 1436371 + | ribosomal protein L33 TERM 541 1436404 - 1436428 + G 89 -7.9 -4.85599 | TGTCGTCGAAAATCG TCGGGATGC ATTACCG GTATCCCGA TTTTTATGAAGTCGG TERM 542 1436779 - 1436761 - g 73 -9.6 -3.85505 | opp_overlap 1436760 TGACCAAGAACATAA TCACCAAC GAC GCTGGTGA GATTGTCCAGGAGGC MSMEG_1340 1436382 - 1436858 + | (3R)-hydroxyacyl-ACP dehydratase subunit HadA MSMEG_1341 1436845 - 1437273 + | (3R)-hydroxyacyl-ACP dehydratase subunit HadB MSMEG_1342 1437283 - 1437792 + | (3R)-hydroxyacyl-ACP dehydratase subunit HadC TERM 543 1437864 - 1437912 + F 75 -12 -3.48924 | gap 3, opp_overlap 1437898 CGGGGTTTTTCCCAT TTCAGCGCGCTT-CCGTTCCGCT CCGCAA AGCG-AACGGGGAGCGCGC-GAA TTGTGTGAGCCCTGA secE 1438122 - 1438556 + | preprotein translocase subunit SecE TERM 544 1439229 - 1439182 - g 78 -14.1 -3.61398 | gap 2, overlap 1439183 GGGCGCGGCGAAGAA GCC-CGGC-AAGGCCGCGGCCGC CGCT GCGTCCGCCGCCTCCACCGAGGC CACGCTGGAGCGTCC nusG 1438583 - 1439425 + | transcription antitermination protein NusG TERM 545 1439465 - 1439444 - f 79 -10.9 -3.87815 | gap 1, opp_overlap 1439448, overlap 1439447 1439448 GTTCACGGCTAGAAA CAAGGGGCGC TTC GCGCCC-TTG GATGAGCAAGGTAAA TERM 546 1439463 - 1439447 - f 75 -9.3 -4.07133 | opp_overlap 1439448, overlap 1439444 1439448 CACGGCTAGAAACAA GGGGCGC TTC GCGCCCT TGGATGAGCAAGGTA TERM 547 1439448 - 1439462 + F 72 -12.8 -3.05463 | opp_overlap 1439447 1439444 1439448 ACGGCTAGAAACAAG GGGCGC TTC GCGCCC TTGGATGAGCAAGGT TERM 548 1439462 - 1439448 - f 71 -12.8 -3.03798 | opp_overlap 1439448, overlap 1439447 1439444 ACGGCTAGAAACAAG GGGCGC TTC GCGCCC TTGGATGAGCAAGGT TERM 549 1439647 - 1439627 - g 79 -14.7 -3.33261 | CTGCAAGGCGTACAA CGCCGCGAC CGA GTCGCAGCG CGGAAACGTCATCCC rplK 1439493 - 1439921 + | 50S ribosomal protein L11 rplA 1439987 - 1440694 + | 50S ribosomal protein L1 TERM 550 1440718 - 1440757 + T 100 -28.2 -4.09864 | opp_overlap 1440724, overlap 1440721 1440724 CGCGAGTTCACTCGC GAAGAACTGCCCCTCTTC TTCG GAAGAGGGGCAGTTCTTC TTTTGGGCGGTCAGT TERM 551 1440721 - 1440754 + T 100 -24.1 -4.17762 | opp_overlap 1440724, overlap 1440718 1440724 GAGTTCACTCGCGAA GAACTGCCCCTCTTC TTCG GAAGAGGGGCAGTTC TTCTTTTGGGCGGTC TERM 552 1440724 - 1440751 + T 100 -20 -4.20868 | opp_overlap 1440724, overlap 1440721 1440718 TTCACTCGCGAAGAA CTGCCCCTCTTC TTCG GAAGAGGGGCAG TTCTTCTTTTGGGCG TERM 553 1440751 - 1440724 - T 100 -20 -3.62597 | opp_overlap 1440721 1440718 1440724 TTCACTCGCGAAGAA CTGCCCCTCTTC TTCG GAAGAGGGGCAG TTCTTCTTTTGGGCG MSMEG_1348 1441997 - 1440768 - | RNA polymerase ECF-subfamily protein sigma factor MSMEG_1349 1442700 - 1442005 - | DGPF domain-containing protein MSMEG_1350 1443685 - 1442825 - | cyclopropane-fatty-acyl-phospholipid synthase 1 MSMEG_1351 1444750 - 1443878 - | cyclopropane-fatty-acyl-phospholipid synthase 1 TERM 554 1444559 - 1444600 + g 74 -12.4 -3.62775 | gap 2, overlap 1444593 CATCCCCGGCTGCAG GCCCAGCTTGCCCAG--CGA CAGG TCGATCTTGGCGAGCTGGGC TTCTTCCAGCGTCAT MSMEG_1352 1445847 - 1444930 - | hydrolase, alpha/beta fold family protein MSMEG_1353 1447268 - 1445847 - | ABC1 family protein TERM 555 1448458 - 1448510 + G 74 -15.4 -3.01712 | gap 1 GGCCGGCGTTCCACT GACGGACCGCCGCGCCGAGC-GCCG TGCG CTGCTGGTCGACGCGGCGTTCCGGC TGTTCGGCGACGGCG MSMEG_1355 1448423 - 1449022 + | transcriptional regulator, TetR family protein MSMEG_1356 1449638 - 1449027 - | hypothetical protein MSMEG_1357 1450170 - 1449643 - | hypothetical protein MSMEG_1359 1450233 - 1451195 + | DeoR-family protein transcriptional regulator MSMEG_1358 1451748 - 1451188 - | hypothetical protein MSMEG_1360 1451809 - 1452558 + | endonuclease/exonuclease/phosphatase TERM 556 1456056 - 1456022 - g 79 -15.7 -3.29144 | gap 2 CTACTGGCTGCACAA CCGCGGGCCCGCACCGC TGG GCGG-GCTG-CCCGCGG TGGCGTACCTGCACC MSMEG_1361 1452576 - 1456718 + | alpha-mannosidase MSMEG_1362 1456715 - 1457314 + | hypothetical protein MSMEG_1363 1457319 - 1458224 + | glucokinase TERM 557 1458544 - 1458556 + F 87 -5.5 -5.00616 | GGACGAGGCTAGAGC CCAGT TGT GCTGG TTTTTTCACGCCCCG TERM 558 1458565 - 1458590 + F 77 -13.3 -3.32769 | GTGCTGGTTTTTTCA CGCCCCGAC CTGTCTGC GTCGGGGCG TTCGTCATTTCCGGA rplJ 1458668 - 1459195 + | 50S ribosomal protein L10 rplL 1459265 - 1459657 + | 50S ribosomal protein L7/L12 TERM 559 1459682 - 1459722 + F 100 -21.3 -3.5511 | opp_overlap 1459688, overlap 1459678 1459688 CTGCTCGATTTTCCA GGAGAAGTCCCCCGGATCT TTC GGATCCGGGGGACTTTTGC TATTTGTGACTCCGC TERM 560 1459688 - 1459716 + F 100 -21.1 -4.53036 | opp_overlap 1459688, overlap 1459678 1459682 GATTTTCCAGGAGAA GTCCCCCGGATCT TTC GGATCCGGGGGAC TTTTGCTATTTGTGA TERM 561 1459716 - 1459688 - f 100 -20.4 -3.4072 | opp_overlap 1459678 1459688 1459682 GATTTTCCAGGAGAA GTCCCCCGGATC TTTCG GATCCGGGGGAC TTTTGCTATTTGTGA MSMEG_1366 1459848 - 1460930 + | ABC transporter, ATP-binding protein TERM 562 1460939 - 1460972 + F 100 -24.7 -2.87132 | gap 1 GGCGTGAGTTTGCCG CGATCAGGCCGGGCCG TCA CGGCCCGGCCTGA-CG TGTCTCAAGGGGCCG rpoB 1461630 - 1465139 + | DNA-directed RNA polymerase subunit beta TERM 563 1465718 - 1465682 - g 71 -10.2 -3.78934 | gap 2 GGCCGTCGAGAAGAA GGCCGTCGAGGATCAGCG CGA CGCCGA-CCTGGA-GGCC CGCGCCCAGAAGCTC rpoC 1465203 - 1469156 + | DNA-directed RNA polymerase subunit beta' TERM 564 1469170 - 1469199 + T 100 -24.3 -4.8048 | opp_overlap 1469170 AAGCAGTAGGAAAAA GCCCCCGGGGTGC GCAA GCGCCCCGGGGGC TTTTTCGTGTGCCGA TERM 565 1469199 - 1469170 - T 100 -22.1 -4.7871 | opp_overlap 1469170 AAGCAGTAGGAAAAA GCCCCCGGGGTGC GCAA GCGCCCCGGGGGC TTTTTCGTGTGCCGA MSMEG_1369 1470270 - 1469221 - | LacI-family protein transcriptional regulator TERM 566 1469605 - 1469591 - G 78 -12.8 -3.72576 | GGCTCGGCGAGGAAA CGCCGC AGC GCGGCG GTCACGGTGTCGGTG MSMEG_1370 1470431 - 1471456 + | 2-deoxy-scyllo-inosamine dehydrogenase MSMEG_1371 1471453 - 1472454 + | hypothetical protein MSMEG_1372 1472465 - 1473223 + | ABC transporter ATP-binding protein MSMEG_1373 1473220 - 1474338 + | ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components MSMEG_1374 1474328 - 1475374 + | ribose ABC transporter, periplasmic binding protein MSMEG_1375 1476229 - 1475387 - | tagatose-1,6-bisphosphate aldolase GatY MSMEG_1376 1476315 - 1477562 + | putative xylulose kinase MSMEG_1377 1477559 - 1478347 + | DeoR-family protein transcriptional regulator MSMEG_1378 1478344 - 1479261 + | 1-phosphofructokinase MSMEG_1379 1479288 - 1480475 + | hypothetical protein MSMEG_1380 1481606 - 1480902 - | transcriptional regulator MSMEG_1381 1481785 - 1482201 + | MmpS5 protein TERM 567 1484240 - 1484219 - g 72 -6.5 -4.2828 | gap 1, overlap 1484201 GGCCATGCAGGAAAA CGCCACGGCC ATG AGCCA-GGCG TTCGACGCGGCCAAG TERM 568 1484831 - 1484858 + G 70 -12.6 -3.37959 | CCGCGCCATGGTCGG CACGGGCGCGGT GGTC ACCGCGGCCGGG TTGGTGTTCGCGTTC MSMEG_1382 1482198 - 1485101 + | MmpL5 protein TERM 569 1485116 - 1485154 + F 82 -16.1 -3.07443 | gap 1, opp_overlap 1485116 ATCTCGCCGAACTGA TGAGTGTCGGGGCCGGTC ACTA GACTGGCCCCG-TGCTCA TTGGCTCGCATGTAG MSMEG_1383 1485148 - 1485900 + | endonuclease IV TERM 570 1485903 - 1485933 + TF 75 -12.4 -3.53012 | opp_overlap 1485891 ACACGCGGGTTAGGC CCGTGCAGCCGGGC CAC GCCCGTCGACACGG TTTGAAAACGAAACC TERM 571 1486091 - 1486040 - gT 76 -13.7 -3.06796 | gap 2, overlap 1486021 TGGGACCTGAGCCAA CCACCGGCGACCCGGCCGACACCCG CGAT CGGGC-TCGGACCCGTCG-CGGTGG CATCCTGCGCATCCT MSMEG_1384 1487475 - 1487074 - | hypothetical protein MSMEG_1385 1485994 - 1487205 + | PAP2 superfamily protein MSMEG_1386 1487534 - 1488700 + | hypothetical protein MSMEG_1387 1488754 - 1490409 + | putative acyl-CoA dehydrogenase MSMEG_1388 1490456 - 1491394 + | enoyl-CoA hydratase MSMEG_1389 1491401 - 1492138 + | hypothetical protein TERM 572 1492439 - 1492417 - g 74 -12 -3.54543 | ATGGACCTGTCGAAA CCGGTGATCG CGG CGATCAGCGG GTACGCCGTCGCAGG MSMEG_1390 1492135 - 1492899 + | enoyl-CoA hydratase MSMEG_1391 1493892 - 1492993 - | transcriptional regulator, LysR family protein MSMEG_1392 1494011 - 1495168 + | alcohol dehydrogenase, class IV MSMEG_1393 1495583 - 1495173 - | hypothetical protein MSMEG_1394 1495991 - 1495614 - | transmembrane protein TERM 573 1496198 - 1496234 + G 82 -17.3 -3.01924 | overlap 1496192 1496191 TGTTGTTGAGGCTGC TGCCGTCGCGGTCACAG CCG TTGTGACCGCTGCGGCG TGTTCGCACACCGTC MSMEG_1395 1496172 - 1496753 + | putative lipoprotein MSMEG_1396 1496756 - 1497277 + | LprB protein MSMEG_1397 1497443 - 1498018 + | transcriptional regulator, TetR family protein rpsL 1498302 - 1498676 + | 30S ribosomal protein S12 rpsG 1498676 - 1499146 + | 30S ribosomal protein S7 TERM 574 1501344 - 1501301 - f 75 -15.2 -2.69964 | overlap 1501298 1501296 1501324 TGTCGAAGGAGATCA TCGCGAAGGCGACTGGCCAG TAAT CTGGCCCGTCGGCCCAGCGA GACCGCACAACTGAA tuf 1501413 - 1502603 + | elongation factor Tu TERM 575 1502620 - 1502657 + F 100 -21.3 -4.56597 | opp_overlap 1502621 1502624 1502642, overlap 1502621 1502624 CTAGGTTCAGCCAAA ACGAGCGGCGCTCACCC GAAA GGGTGGGCGCCGCTTGC TTTTTCGGCAACGCG TERM 576 1502656 - 1502621 - f 100 -20.4 -4.18494 | opp_overlap 1502620 1502621 1502624, overlap 1502624 1502642 TAGGTTCAGCCAAAA CGAGCGGCGCTCACCC GAAA GGGTGGGCGCCGCTTG CTTTTTCGGCAACGC TERM 577 1502621 - 1502656 + F 100 -24.8 -3.33744 | opp_overlap 1502621 1502624 1502642, overlap 1502620 1502624 TAGGTTCAGCCAAAA CGAGCGGCGCTCACCC GAAA GGGTGGGCGCCGCTTG CTTTTTCGGCAACGC TERM 578 1502624 - 1502653 + F 100 -22.9 -3.80855 | opp_overlap 1502621 1502624 1502642, overlap 1502621 1502620 GTTCAGCCAAAACGA GCGGCGCTCACCC GAAA GGGTGGGCGCCGC TTGCTTTTTCGGCAA TERM 579 1502653 - 1502624 - f 100 -20.7 -3.11208 | opp_overlap 1502624 1502621 1502620, overlap 1502621 1502642 GTTCAGCCAAAACGA GCGGCGCTCACCC GAAA GGGTGGGCGCCGC TTGCTTTTTCGGCAA MSMEG_1402 1502841 - 1503758 + | hypothetical protein MSMEG_1403 1503848 - 1504765 + | cutinase superfamily protein MSMEG_1404 1504930 - 1506252 + | IS1096, tnpA protein MSMEG_1405 1506961 - 1506260 - | IS1096, tnpR protein MSMEG_1406 1507065 - 1507916 + | hypothetical protein TERM 580 1509278 - 1509247 - f 71 -7.3 -4.07568 | gap 2, opp_overlap 1509271, overlap 1509248 GCTGGCCCCGCAAAA CCTGTCCCGTCTGGC CGCC GACAG-CGGGAC-GG TGACGTCGCCGTTGG arcA 1510936 - 1512213 + | arginine deiminase fabG 1512243 - 1513094 + | 3-ketoacyl-(acyl-carrier-protein) reductase MSMEG_1411 1514016 - 1513135 - | universal stress protein family protein MSMEG_1412 1515580 - 1514075 - | amino acid permease rocD 1516876 - 1515608 - | ornithine--oxo-acid transaminase MSMEG_1414 1517760 - 1516873 - | amidinotransferase MSMEG_1415 1517874 - 1518320 + | AsnC-family protein transcriptional regulator MSMEG_1416 1518390 - 1519577 + | pyridine nucleotide-disulphide oxidoreductase MSMEG_1417 1520925 - 1519642 - | glyoxalase family protein MSMEG_1418 1521446 - 1520922 - | RNA polymerase ECF-type sigma factor MSMEG_1419 1521559 - 1522269 + | hypothetical protein MSMEG_1420 1522872 - 1522270 - | transcriptional regulatory protein MSMEG_1421 1522905 - 1523063 + | hypothetical protein TERM 581 1523261 - 1523206 - g 100 -27.7 -3.61398 | GTCGTTCCTGAAGAA CCGAACGGTCGTCGAGGTGGTCAAC TCGCTG GCTGACCACCCCGACGCCCGGTCGG CGCTGTGCGCCGCGG MSMEG_1422 1523066 - 1523374 + | hypothetical protein MSMEG_1423 1523371 - 1524549 + | radical SAM domain-containing protein MSMEG_1424 1524546 - 1525745 + | FMN-dependent dehydrogenase TERM 582 1525800 - 1525780 - f 83 -14.7 -3.29263 | opp_overlap 1525779 ACAGGGGTGGCAGAA GGGGCGCAC GGG ATGCGCCCC CTCTTGCGCACGGAA MSMEG_1425 1525942 - 1526610 + | creatininase subfamily protein TERM 583 1526929 - 1526885 - g 79 -15.6 -3.32844 | gap 1 CCCCGTACGGGACAA CGCATCCGGC-CTGCACCGCC TGAT GGCGGCGCTGCGCGGGCTGCG CGTGATCGTGGTCGA MSMEG_1426 1526607 - 1528019 + | membrane sugar transferase MSMEG_1428 1528038 - 1529444 + | glucose-methanol-choline oxidoreductase MSMEG_1427 1531005 - 1529431 - | transmembrane efflux protein TERM 584 1531033 - 1531069 + H 100 -14.5 -4.42386 | opp_overlap 1531042 1531044 CGTCGGGTGGAGTTT CGAGACTAACAGTCTCG TAG CGAGACGGTAAGTCTTG TTTTGTCGATGGAGG MSMEG_1430 1531094 - 1531729 + | transcriptional regulator, TetR family protein MSMEG_1429 1532945 - 1531695 - | cytochrome P450-terp TERM 585 1532962 - 1532991 + r 100 -20.9 -2.94595 | opp_overlap 1532962, overlap 1532964 CGGCTCCTCACACAA CACTGCGCTTGAC GGGT GTCAAGCGCAGTG TATGTGATCGGGCTT TERM 586 1532991 - 1532962 - R 100 -20.9 -3.48276 | opp_overlap 1532962 1532964 CGGCTCCTCACACAA CACTGCGCTTGAC GGGT GTCAAGCGCAGTG TATGTGATCGGGCTT TERM 587 1532964 - 1532989 + r 88 -17.7 -3.02471 | opp_overlap 1532962, overlap 1532962 GCTCCTCACACAACA CTGCGCTTGAC GGGT GTCAAGCGCAG TGTATGTGATCGGGC MSMEG_1431 1534344 - 1533049 - | cytochrome P450-terp TERM 588 1535256 - 1535283 + G 82 -16.2 -3.2794 | GGCTGTCCCGACCCG GCGAGCGCGGGC GACT GCCTGCGCGCGC TTCCTGTGGATCGAC MSMEG_1432 1534440 - 1536026 + | acetylcholinesterase MSMEG_1433 1537144 - 1536329 - | thioesterase MSMEG_1434 1536028 - 1536393 + | hypothetical protein TERM 589 1536872 - 1536910 + gF 73 -7.5 -4.18018 | TGTCACGGACGGAAA TCTTCGTCGAGCGTG GGGGCTGTG TACGCTCGATGGGGA TTTTGCGTGCACAAG rpsJ 1537276 - 1537581 + | 30S ribosomal protein S10 rplC 1537596 - 1538249 + | 50S ribosomal protein L3 TERM 590 1538746 - 1538707 - g 82 -11.4 -4.22475 | gap 1 GACGGAAAACAAGAA GGTGCTCGTCGTCATCGGT CGC ACCGATGAGGTCG-GCGCC AAGAGCGTGCGCAAT rplD 1538249 - 1538896 + | 50S ribosomal protein L4 rplW 1538896 - 1539198 + | 50S ribosomal protein L23 rplB 1539223 - 1540059 + | 50S ribosomal protein L2 rpsS 1540081 - 1540362 + | 30S ribosomal protein S19 MSMEG_1441 1540359 - 1540820 + | 50S ribosomal protein L22 rpsC 1540820 - 1541647 + | 30S ribosomal protein S3 rplP 1541650 - 1542066 + | 50S ribosomal protein L16 rpmC 1542066 - 1542299 + | 50S ribosomal protein L29 MSMEG_1445 1542299 - 1542595 + | 30S ribosomal protein S17 TERM 591 1542670 - 1542627 - f 73 -12.5 -3.34988 | gap 2, opp_overlap 1542627 1542629, overlap 1542625 1542623 1542629 TCAGCGACAAACACA TACGCAGACCCCC-AC-CCGC TCCG GCGGTGTCGGGGGTCTGTGTG TTTTGCGGCGTTCGC TERM 592 1542627 - 1542670 + F 95 -16.9 -4.11484 | gap 2, opp_overlap 1542627 1542625 1542623 1542629, overlap 1542629 TCAGCGACAAACACA TACGCAGACCCCC-AC-CCGC TCCG GCGGTGTCGGGGGTCTGTGTG TTTTGCGGCGTTCGC TERM 593 1542668 - 1542629 - f 83 -15.1 -3.23737 | gap 2, opp_overlap 1542627 1542629, overlap 1542627 1542625 1542623 AGCGACAAACACATA CGCAGACCCCC-AC-CCGC TCCG GCGGTGTCGGGGGTCTGTG TGTTTTGCGGCGTTC TERM 594 1542629 - 1542668 + F 93 -17.3 -3.6543 | gap 2, opp_overlap 1542629 1542627 1542625 1542623, overlap 1542627 AGCGACAAACACATA CGCAGACCCCC-AC-CCGC TCCG GCGGTGTCGGGGGTCTGTG TGTTTTGCGGCGTTC MSMEG_1446 1542699 - 1543220 + | NTP pyrophosphohydrolase MSMEG_1447 1543640 - 1543239 - | transcriptional regulator, MerR family protein TERM 595 1543366 - 1543385 + g 81 -12.8 -3.85698 | opp_overlap 1543346, overlap 1543367 GCGGCCGTGGCACGT TCGGCCGC GGTG GCGGCCGG TTTGTCGAGGACGGC MSMEG_1448 1545139 - 1543640 - | integral membrane transporter MSMEG_1450 1546037 - 1546177 + | hypothetical protein MSMEG_1451 1546230 - 1548581 + | arylsulfatase MSMEG_1452 1548624 - 1549514 + | sulfatase-modifying factor 1 MSMEG_1453 1551166 - 1549538 - | citrate transporter MSMEG_1454 1551217 - 1551333 + | hypothetical protein TERM 596 1551348 - 1551383 + F 78 -3 -4.89393 | overlap 1551349 1551350 AAGGCTGTTACGTTT GACCGGGAGTCGCCGT GCAC ACCGCGACGACCGGGA TTTTTGTGCACTTTG MSMEG_1455 1551538 - 1552914 + | putative multidrug resistance protein MSMEG_1456 1554600 - 1552915 - | hypothetical protein MSMEG_1457 1554800 - 1555246 + | hypothetical protein MSMEG_1458 1555365 - 1556084 + | tena/thi-4 family protein MSMEG_1459 1556130 - 1556480 + | Rieske (2Fe-2S) domain-containing protein TERM 597 1557152 - 1557166 + G 71 -11.4 -3.54741 | GTCGTCAGCACCGGC GCGCAG GAC CTGCGC TTTGACGCCGTCGTG MSMEG_1460 1556477 - 1557703 + | pyridine nucleotide-disulphide oxidoreductase TERM 598 1557814 - 1557777 - g 82 -16.9 -3.28712 | opp_overlap 1557786 CTTCGCGCGCCACAA CCCGGCTGACCCCGACG ATCT CGTCGGGGTCTTCCCGG CCTCCGACGGCGTCG TERM 599 1557786 - 1557805 + G 74 -15 -3.02511 | opp_overlap 1557777 CCACAACCCGGCTGA CCCCGACG ATCT CGTCGGGG TCTTCCCGGCCTCCG TERM 600 1558779 - 1558789 + G 72 -8.2 -4.07568 | overlap 1558776 TCACGGATTCTTCGT CCGC CCG GCGG TTTTCGCCGACGCGC MSMEG_1461 1557700 - 1559142 + | 5-oxovalerate dehydrogenase MSMEG_1462 1559157 - 1559510 + | ferredoxin MSMEG_1463 1559507 - 1561111 + | gamma-glutamyltranspeptidase MSMEG_1464 1561101 - 1561595 + | translation initiation inhibitor rplN 1561939 - 1562307 + | ribosomal protein L14 rplX 1562308 - 1562625 + | 50S ribosomal protein L24 rplE 1562625 - 1563188 + | 50S ribosomal protein L5 rpsN 1563192 - 1563377 + | ribosomal protein S14p/S29e rpsH 1563476 - 1563874 + | 30S ribosomal protein S8 rplF 1563889 - 1564428 + | 50S ribosomal protein L6 rplR 1564456 - 1564839 + | 50S ribosomal protein L18 rpsE 1564865 - 1565509 + | 30S ribosomal protein S5 rpmD 1565512 - 1565697 + | ribosomal protein L30 rplO 1565694 - 1566137 + | 50S ribosomal protein L15 TERM 601 1566156 - 1566193 + T 100 -21.5 -4.3739 | opp_overlap 1566158 1566161, overlap 1566158 CGCTGCACAAGCAGT AAGAACTGCCCCTTCTC TTCG GAGAAGGGGCAGTTCTG TTTTGTCGGGAGCTC TERM 602 1566191 - 1566158 - T 100 -24.1 -3.30474 | opp_overlap 1566158 1566156, overlap 1566161 CTGCACAAGCAGTAA GAACTGCCCCTTCTC TTCG GAGAAGGGGCAGTTC TGTTTTGTCGGGAGC TERM 603 1566158 - 1566191 + T 100 -24.1 -3.79419 | opp_overlap 1566158 1566161, overlap 1566156 CTGCACAAGCAGTAA GAACTGCCCCTTCTC TTCG GAGAAGGGGCAGTTC TGTTTTGTCGGGAGC TERM 604 1566188 - 1566161 - T 100 -20 -3.78793 | opp_overlap 1566158 1566156, overlap 1566158 CACAAGCAGTAAGAA CTGCCCCTTCTC TTCG GAGAAGGGGCAG TTCTGTTTTGTCGGG MSMEG_1475 1567187 - 1566207 - | hypothetical protein sppA 1567306 - 1569090 + | signal peptide peptidase SppA, 67K type TERM 605 1569886 - 1569903 + G 75 -8.3 -4.21908 | overlap 1569897 GGCTTTTCGTTCGGC GCCCTGC TCAT GCTGGGC TTTTCCCTGCTGCTG MSMEG_1477 1569316 - 1570743 + | major facilitator superfamily protein MSMEG_1478 1570776 - 1571426 + | transporter, LysE family protein MSMEG_1479 1572342 - 1571431 - | methyltransferase, putative, family protein MSMEG_1480 1573247 - 1572351 - | methyltransferase MSMEG_1481 1574171 - 1573257 - | methyltransferase TERM 606 1573709 - 1573765 + g 78 -15.8 -3.06492 | gap 2 CGTCACGCAGATCCA CCGCGACCGT-GCGGCGCTCGGCG-GTC GGT GACGCGCCGATCTCGGCCATGGCCGCGG TCTTCGCCTCGATGA MSMEG_1482 1575092 - 1574178 - | methyltransferase TERM 607 1575120 - 1575148 + H 74 -13.1 -3.24032 | opp_overlap 1575119 1575116 1575118, overlap 1575118 1575121 CATGTCTCAAATAGC GCCGCACCCGC TCGAACC GCGGGTGCGGA TATTAGTTAGGCCCT TERM 608 1575121 - 1575147 + H 81 -16.6 -2.54098 | opp_overlap 1575119 1575116 1575118, overlap 1575120 1575118 ATGTCTCAAATAGCG CCGCACCCGC TCGAACC GCGGGTGCGG ATATTAGTTAGGCCC TERM 609 1576110 - 1576140 + G 72 -14 -3.14132 | overlap 1576098 CACCGCCGTGGTCAT CGCCGCGCTGGTGA TCA TCATCGGCGTGGTG TTCGTCGAGCAGGGC secY 1575442 - 1576767 + | preprotein translocase subunit SecY adk 1576764 - 1577309 + | adenylate kinase TERM 610 1577511 - 1577529 + G 72 -13.8 -3.16564 | opp_overlap 1577498 AACGGTCATCCGCGA CGGCGGCG GCA CGCCGTCG TTCCTCGGCTACCAC map 1577329 - 1578126 + | methionine aminopeptidase MSMEG_1486 1578235 - 1578777 + | RNA polymerase sigma factor SigL TERM 611 1578916 - 1578951 + G 73 -16.2 -2.65264 | gap 1, opp_overlap 1578937 CGTGCCCGCAGTGCC GCGCGGGCGTCGCCG AACTGAG CGGC-ATGCCCGCGC TGCTGTCGCTGATCG MSMEG_1487 1578774 - 1579505 + | hypothetical protein TERM 612 1580024 - 1580038 + G 75 -8.5 -4.11664 | opp_overlap 1580012 1580009 1580022 1580023 CCAGCGGCGACAACG GCGCG CTCGA CGCGC TTTCGTTGTTCTCGG MSMEG_1488 1579678 - 1581408 + | acetolactate synthase MSMEG_1489 1581389 - 1582069 + | hypothetical protein MSMEG_1490 1582078 - 1583100 + | 3-oxoacyl-ACP synthase III MSMEG_1491 1583124 - 1584137 + | histidinol-phosphate aminotransferase 2 MSMEG_1492 1584173 - 1584694 + | transcriptional regulator, MarR family protein MSMEG_1493 1585987 - 1584746 - | sensor histidine kinase MSMEG_1494 1586646 - 1585984 - | transcriptional regulatory protein DegU MSMEG_1495 1586745 - 1587569 + | HAD-superfamily protein hydrolase subfamily protein IA, variant 3, putative mmsB 1588521 - 1587649 - | 3-hydroxyisobutyrate dehydrogenase MSMEG_1497 1589725 - 1588538 - | acyl-CoA dehydrogenase family protein member 8 TERM 613 1589102 - 1589126 + g 76 -14.3 -3.44229 | GAAGATCACCTGGGC GGTGGGCTGGG CGT TCCAGCCCATC TTCTGCTCGTCGGCT mmsA 1591252 - 1589732 - | methylmalonate-semialdehyde dehydrogenase MSMEG_1499 1591424 - 1592929 + | oxygenase MSMEG_1500 1592926 - 1593525 + | TetR family protein transcriptional regulatory protein TERM 614 1594424 - 1594375 - g 71 -10 -3.81488 | opp_overlap 1594383 1594384, overlap 1594377 TGGCGCGAAACAGAA CAGGCCGGTGCGAGCGA-ATATCG CAAG CGTTATCTCGCCCCCGCCGGCC-G CAGTGATCCGCTGTC TERM 615 1594423 - 1594377 - g 76 -13.7 -3.49232 | gap 1, opp_overlap 1594383 1594384, overlap 1594375 GCGCGAAACAGAACA GGCCGGTGCGAGCGA-ATATCG CAAG CGTTATCTCGCCCCCGCCGGCC GCAGTGATCCGCTGT MSMEG_1501 1593619 - 1594473 + | methyltransferase, putative, family protein MSMEG_1502 1594527 - 1595402 + | ABC transporter, ATP-binding protein MSMEG_1503 1595399 - 1596112 + | antibiotic ABC transporter transmembrane protein MSMEG_1504 1596109 - 1596867 + | antibiotic ABC transporter transmembrane protein MSMEG_1505 1597764 - 1596886 - | integral membrane protein TERM 616 1597725 - 1597755 + g 82 -17.5 -3.05596 | ACGCCACGACCACCA GGACCGCGGCGCC GGCCG GGCGTCGCGGACC TTCCGTCACGCCGTC MSMEG_1506 1598429 - 1597761 - | transcriptional regulator, TetR family protein TERM 617 1598405 - 1598428 + g 75 -8.8 -4.17316 | gap 1, overlap 1598410 TTTCGCTCCAGCTCT TGC-GCGCGGC GCC GCCGGGCCGCA TTATTTTCCAAACGT TERM 618 1598775 - 1598833 + G 82 -18.7 -2.83164 | gap 1, opp_overlap 1598766 1598768 GACCAACACCCACAG CGCCGGCGTCGTGCGCGACGCCCT-CGT CGAT GCGCAGGTCGCCGCGCGCGGCGACGGCC TGTACTGGTCGCTCC TERM 619 1598956 - 1598916 - g 78 -16.8 -3.05844 | gap 1, opp_overlap 1598943, overlap 1598892 1598893 CGTGCGAGCCGAACA CGTCCACGCCG-CGCTCGC CGCC GCGAGCGACGGCCCGGTCG CCGAGGGCAACGTCG MSMEG_1507 1598476 - 1599585 + | D-aminopeptidase TERM 620 1599833 - 1599851 + G 73 -10.2 -3.88175 | overlap 1599839 CGCGATGACCCCGTA CGTGCCGG AGG CCGGTGCG TTCTTCTCGTATGTG MSMEG_1508 1599585 - 1601009 + | amino acid permease-associated region MSMEG_1509 1601612 - 1601016 - | TetR-family protein transcriptional regulator MSMEG_1511 1601665 - 1602363 + | putative oxidoreductase MSMEG_1510 1602965 - 1602360 - | dTDP-4-dehydrorhamnose 3,5-epimerase rfbB 1603957 - 1602962 - | dTDP-glucose 4,6-dehydratase MSMEG_1513 1604835 - 1603984 - | hypothetical protein MSMEG_1514 1605760 - 1604864 - | hypothetical protein MSMEG_1515 1607334 - 1605862 - | two-component sensor histidine kinase TERM 621 1606779 - 1606834 + g 78 -13.3 -3.66286 | gap 3 CGAGCTTGTGGCGCA TCTTGCCGACGCC-CT-CGCGC-AGGTC CGC GACCGCGCGCGCGGTGGCGGCGGCGGGA TTGTTGAGCTGATGT MSMEG_1516 1609002 - 1607344 - | thioredoxin reductase MSMEG_1517 1610719 - 1609139 - | SPFH domain-containing protein/band 7 family protein MSMEG_1518 1611241 - 1610744 - | hypothetical protein TERM 622 1611329 - 1611286 - H 72 -11.6 -3.53224 | CAGCGCGGTTCGAAA CGGGCCGCTCACGGACCATG ACCC CAGAGTCCGCGAGCGACGTG GCTCACTGCACACAT infA 1611597 - 1611818 + | translation initiation factor IF-1 rpmJ 1611901 - 1612014 + | 50S ribosomal protein L36 rpsM 1612201 - 1612575 + | 30S ribosomal protein S13 TERM 623 1612614 - 1612598 - g 72 -9.3 -3.98913 | overlap 1612595 1612599 GGCACAGGCAAAGAA GGGCGGC ACG GCCGCCA AGAAGGGTCAGAAGA rpsK 1612581 - 1612997 + | 30S ribosomal protein S11 rpsD 1613023 - 1613628 + | 30S ribosomal protein S4 TERM 624 1613672 - 1613634 - f 80 -12.3 -3.76048 | gap 1, overlap 1613635 CTCGAAGTAAGAGAA GGCCCGCGCCGGTTCCGA CCTG TCGGGGC-GGCGCGGGCA CCACCTACCGGCATC TERM 625 1613671 - 1613635 - f 80 -15.8 -2.85147 | gap 1, overlap 1613634 TCGAAGTAAGAGAAG GCCCGCGCCGGTTCCGA CCTG TCGGGGC-GGCGCGGGC ACCACCTACCGGCAT TERM 626 1613737 - 1613722 - g 100 -3.2 -5.84381 | overlap 1613723 GGAGTAAGAAAAAAA TGCTGA TCTC TCAGCG TCCCACCCTGTCCGA rpoA 1613721 - 1614773 + | DNA-directed RNA polymerase subunit alpha MSMEG_1525 1614848 - 1615447 + | 50S ribosomal protein L17 TERM 627 1615461 - 1615501 + F 100 -22.8 -3.05963 | gap 1, opp_overlap 1615468, overlap 1615466 AGTCATCAGGACACG CGCAACATGCCCGCCATCG AATC CGGTGGCGGGCATGTT-CG TCTTCGCCTCGACAT TERM 628 1615466 - 1615497 + F 100 -22.4 -3.37245 | opp_overlap 1615468, overlap 1615461 TCAGGACACGCGCAA CATGCCCGCCATCG AATC CGGTGGCGGGCATG TTCGTCTTCGCCTCG TERM 629 1615495 - 1615468 - g 82 -17 -3.05521 | opp_overlap 1615466 1615461 AGGACACGCGCAACA TGCCCGCCATCG AATC CGGTGGCGGGCA TGTTCGTCTTCGCCT truA 1615467 - 1616342 + | tRNA pseudouridine synthase A MSMEG_1526 1617031 - 1616339 - | cutinase TERM 630 1617062 - 1617072 + r 70 -2.4 -4.62783 | opp_overlap 1617056 GGACAAGATCGGCGC GGCC CCA GGAC TTTTTGACGTAGCTG MSMEG_1528 1617769 - 1617095 - | cutinase MSMEG_1529 1618441 - 1617806 - | serine esterase, cutinase family protein MSMEG_1530 1619572 - 1618493 - | integral membrane protein MSMEG_1531 1619643 - 1620203 + | hypothetical protein MSMEG_1532 1620545 - 1620225 - | antibiotic biosynthesis monooxygenase MSMEG_1534 1620683 - 1622059 + | hypothetical protein MSMEG_1533 1623352 - 1622024 - | subtilase family protein MSMEG_1535 1624662 - 1623349 - | hypothetical protein TERM 631 1625401 - 1625447 + G 73 -15.9 -2.63631 | ACTCGGCGGCCACTA CCGGTTG-ACCGGGCCGGACGAC CAG GTCG-CCGGCCTGGTGCGGGCGG TGCTGTGCCAATTGG MSMEG_1536 1624781 - 1628416 + | ftsk/SpoIIIE family protein MSMEG_1537 1628401 - 1629507 + | hypothetical protein MSMEG_1538 1629580 - 1629891 + | hypothetical protein MSMEG_1539 1629917 - 1630213 + | hypothetical protein TERM 632 1630227 - 1630270 + T 100 -24 -3.57119 | opp_overlap 1630224 1630223, overlap 1630265 GATCCCACAAATGCC TGTGCGGTCCCACCCGGTAT GGAG AGGTCGGGTGGGACCGCACA TTTCGCGCGTCTCTA MSMEG_1540 1631665 - 1630283 - | ATP-dependent RNA helicase MSMEG_1541 1631708 - 1631833 + | hypothetical protein MSMEG_1542 1631951 - 1633222 + | transcriptional regulator MSMEG_1543 1633314 - 1634858 + | eptc-inducible aldehyde dehydrogenase MSMEG_1544 1635013 - 1635411 + | PduO protein MSMEG_1545 1636125 - 1635427 - | hypothetical protein MSMEG_1546 1636280 - 1636708 + | coenzyme B12-dependent glycerol dehydrogenase small subunit MSMEG_1547 1636718 - 1638430 + | glycerol dehydratase large subunit MSMEG_1548 1638427 - 1639029 + | propanediol utilization: dehydratase, medium subunit TERM 633 1640204 - 1640146 - f 71 -13.2 -2.97029 | overlap 1640145 GCGCACCAAGGAAAG CGGTATGCGCGCGGTGGC-CGACG-CGGTC CGC GACCGTCTGCGTGCCACCG-GCGCG-ACCG GCGCCGACGTCGAGG TERM 634 1640889 - 1640877 - f 70 -4.7 -4.38712 | overlap 1640878 CGCACGCCCAGAAAA TGGGG ACG CCCCT TGACGCGTAGCGCCG MSMEG_1550 1640922 - 1641263 + | PduH protein MSMEG_1551 1641517 - 1641323 - | hypothetical protein TERM 635 1641768 - 1641798 + GH 90 -16 -3.53012 | overlap 1641769 GTGGCGGCTACACCT TCGCCCGCCGGGCC CTC GGCCCGTGGGGCGG TTTCGCGACCGGCAC TERM 636 1641769 - 1641797 + GH 84 -17.3 -2.71712 | overlap 1641768 TGGCGGCTACACCTT CGCCCGCCGGGCC CTC GGCCCGTGGGGCG GTTTCGCGACCGGCA eat 1641497 - 1642909 + | ethanolamine permease eutB 1642906 - 1644321 + | ethanolamine ammonia-lyase, large subunit eutC 1644318 - 1645094 + | ethanolamine ammonia-lyase small subunit TERM 637 1645109 - 1645155 + F 93 -18.3 -3.55761 | opp_overlap 1645139, overlap 1645097 GCCTCAGCGTCGAGC GTTGGCTTGTGTGCCACATTT CCCGA AAATCTCGCACACAAGCCAAC TTTCGCCAGTGCGTC rplM 1646296 - 1646739 + | 50S ribosomal protein L13 rpsI 1646736 - 1647188 + | ribosomal protein S9 TERM 638 1647203 - 1647235 + F 100 -25.7 -4.58085 | ATCTGTCGCCTTCAG CCGCCGAGCGTGGAA TTT TTCCGCGCTCGGCGG TTTCTTTATGCGTCT MSMEG_1558 1647548 - 1648012 + | hypothetical protein TERM 639 1648032 - 1648068 + F 100 -21.6 -4.45083 | opp_overlap 1648032, overlap 1648033 CGCTGATCCGAACCA GGGGAGCACCGCCCGC AGCCA GCGGGCGGTGCTCTCG TTTTGTGGGTCTCGA TERM 640 1648068 - 1648032 - f 90 -19.4 -2.73364 | opp_overlap 1648032 1648033 CGCTGATCCGAACCA GGGGAGCACCGCCCGC AGCCA GCGGGCGGTGCTCTCG TTTTGTGGGTCTCGA TERM 641 1648033 - 1648067 + F 100 -25.1 -3.26568 | opp_overlap 1648032, overlap 1648032 GCTGATCCGAACCAG GGGAGCACCGCCCGC AGCCA GCGGGCGGTGCTCTC GTTTTGTGGGTCTCG TERM 642 1648875 - 1648826 - g 70 -12.2 -3.36273 | opp_overlap 1648839, overlap 1648832 CGGCCTGAACATCAA CGACAACTGCGGATCCAC-CCACA TGGA TGTGGTGCGGG-CCGCGGTCGTCG AACACGGCGCCGATC glmM 1648164 - 1649525 + | phosphoglucosamine mutase MSMEG_1560 1649573 - 1649881 + | hypothetical protein MSMEG_1561 1652176 - 1651286 - | LysR-family protein trancsriptional regulator MSMEG_1563 1652167 - 1652964 + | short-chain dehydrogenase/reductase SDR MSMEG_1564 1654452 - 1652977 - | lignostilbene-alpha,beta-dioxygenase MSMEG_1565 1654695 - 1655318 + | transcriptional regulator, TetR family protein MSMEG_1566 1656389 - 1655346 - | oxidoreductase MSMEG_1567 1657288 - 1656437 - | hypothetical protein TERM 643 1656599 - 1656582 - G 77 -4 -4.77165 | opp_overlap 1656589 1656598 GTGGCCAGAAGAAAA CCGGTC AGCAGG GCCCGG ACCCGCTTCTGGGTG glmS 1657467 - 1659353 + | D-fructose-6-phosphate amidotransferase MSMEG_1569 1660425 - 1660216 - | hypothetical protein MSMEG_1570 1659357 - 1660295 + | carboxylesterase MSMEG_1571 1661329 - 1660346 - | integral membrane protein TERM 644 1660641 - 1660621 - GH 74 -13.3 -3.21962 | overlap 1660612 1660609 1660616 AGAGGATGAACGCAA TCGCGGTCA CGC CGACCGCGA GGTAGCCGATCGCCG MSMEG_1572 1661357 - 1662760 + | transcriptional regulator, GntR family protein MSMEG_1573 1662840 - 1664252 + | carbohydrate kinase family protein TERM 645 1664702 - 1664687 - g 71 -10.4 -3.72576 | GGGCTGGCGATGAAA TGGCGC TGGC GCGCCA AGGCCGGCGACTGGA TERM 646 1665172 - 1665146 - g 75 -8.6 -4.15044 | opp_overlap 1665148 1665151, overlap 1665149 GTGTGGCGCAACAAA GAGCACCTGCCC GAG GAGCTGGTGTTC CGGGTCAACTACCTC MSMEG_1574 1664273 - 1665652 + | glutamate decarboxylase alr 1665708 - 1666877 + | alanine racemase MSMEG_1576 1666901 - 1667959 + | alpha/beta hydrolase fold MSMEG_1577 1667952 - 1668419 + | hypothetical protein TERM 647 1668787 - 1668744 - g 72 -15.3 -2.87564 | gap 2, opp_overlap 1668744 CGATCGGCGGAGACA CCCGCGGCGACGTCCTCGTCG TCAC CGACGCG--CGCCGCCGCGAG GTGTACTGGGCGCGG MSMEG_1578 1668416 - 1669060 + | peptidase M22, glycoprotease rimI 1669057 - 1669533 + | ribosomal-protein-alanine acetyltransferase MSMEG_1580 1669530 - 1670552 + | O-sialoglycoprotein endopeptidase TERM 648 1670695 - 1670724 + G 76 -14.3 -3.53012 | gap 1, overlap 1670682 GGGTGCCGACGCCAT CGCCGCGTTGTTCG CGG CGACC-ACGCGGCG TTTCCCCGAGCACGG MSMEG_1581 1670549 - 1670998 + | hypothetical protein groES 1671178 - 1671480 + | co-chaperonin GroES TERM 649 1671606 - 1671592 - g 70 -9.2 -3.95986 | overlap 1671593 TTGAATTCAACGAAA CCGCCC GCC GGGCGA TGGAGGCCGGCGTCG TERM 650 1672594 - 1672546 - g 70 -15.1 -2.73221 | overlap 1672543 TCAACAAGGACAGCA CCGTGATCGTCGACGGCGGCGGC ACC GCCGAGGCCATCGCCGATCGCGT CAAGCAGATCAAGTC groEL 1671564 - 1673186 + | chaperonin GroEL TERM 651 1673201 - 1673228 + F 100 -20.6 -4.56914 | ATCCATTTCACGCGA CACCCCCGGTCC GCTT GGGCCGGGGGTG TTTTCGTTTGGGTGC TERM 652 1673249 - 1673259 + G 83 -8.2 -4.57569 | GTTTGGGTGCGGGCG CCGC TGA GCGG TTTTTCGAGGCCTGC MSMEG_1584 1673236 - 1673706 + | hypothetical protein MSMEG_1585 1673703 - 1674266 + | cupin domain-containing protein MSMEG_1586 1675408 - 1674284 - | beta-lactamase TERM 653 1675355 - 1675337 - G 72 -13.2 -3.14683 | opp_overlap 1675348 AGACGCCGCGACGAA CGTGATCG CCG CGATCACG GCGCCGGTGGCGGCC MSMEG_1588 1675529 - 1675864 + | hypothetical protein MSMEG_1587 1676820 - 1675840 - | alpha/beta hydrolase fold MSMEG_1589 1677860 - 1676817 - | hypothetical protein TERM 654 1677424 - 1677392 - G 70 -12.6 -3.31792 | opp_overlap 1677411, overlap 1677393 CCATCAGCTGGACAA CCGCGTCGACCGCC TCGAT GGCCGTCGTCGCGA GGACCTTCATGAGAT MSMEG_1590 1677871 - 1678182 + | hypothetical protein MSMEG_1591 1678351 - 1679754 + | TnpC protein TERM 655 1679809 - 1679795 - f 75 -7.1 -4.40237 | GAGCACACAGGAAAA GCTGG GCAGA CCAGC AACTACCGCATGCCC TERM 656 1680139 - 1680129 - f 83 -2.4 -5.14563 | opp_overlap 1680135 TCGCGTATTAAAAAA CGGC TCC GACG CACCCTGCCGAGGTG MSMEG_1592 1680305 - 1681108 + | hypothetical protein MSMEG_1594 1681151 - 1681948 + | enoyl-CoA hydratase MSMEG_1593 1682101 - 1681937 - | hypothetical protein MSMEG_1595 1682877 - 1682146 - | putative oxidoreductase TERM 657 1682902 - 1682953 + H 80 -14.6 -3.14132 | opp_overlap 1682905 1682906, overlap 1682900 1682906 CGTCCCGGATTAGAG TAAGTGGGGACGATCCCCACGTAA GTAG TTATGTGGGGAGACTCCCCATTTA TTCCTGAGGAGACGA TERM 658 1682921 - 1682905 - H 71 -12.3 -3.29471 | opp_overlap 1682900 1682902 1682906, overlap 1682906 CCCGGATTAGAGTAA GTGGGGA CGA TCCCCAC GTAAGTAGTTATGTG TERM 659 1682906 - 1682949 + H 95 -13.2 -4.24342 | opp_overlap 1682905 1682906, overlap 1682900 1682902 CCGGATTAGAGTAAG TGGGGACGATCCCCACGTAA GTAG TTATGTGGGGAGACTCCCCA TTTATTCCTGAGGAG TERM 660 1683506 - 1683529 + G 72 -6 -4.30014 | gap 1, opp_overlap 1683506 ACCGCGCCCGCAGAA GGCTGGA-GTT CGC GACGTCCGGCC TTTTCGATTCGTGAA MSMEG_1596 1682974 - 1683543 + | transcriptional regulator TERM 661 1683650 - 1683618 - T 84 -14.3 -3.58726 | opp_overlap 1683617 1683620 1683624 1683626, overlap 1683620 1683624 CGGCCGGATACAGAA GACAAAGACCCCTAT TTG ATAGGGGTCTCTGTG CGTTTGCTGTGGGCT TERM 662 1683620 - 1683648 + T 75 -14.7 -2.69601 | opp_overlap 1683618 1683620 1683624, overlap 1683617 1683624 1683626 GCCGGATACAGAAGA CAAAGACCCCTAT TTG ATAGGGGTCTCTG TGCGTTTGCTGTGGG TERM 663 1683648 - 1683620 - T 90 -16.9 -3.37198 | opp_overlap 1683620 1683617 1683624 1683626, overlap 1683618 1683624 GCCGGATACAGAAGA CAAAGACCCCTAT TTG ATAGGGGTCTCTG TGCGTTTGCTGTGGG TERM 664 1683624 - 1683644 + T 75 -14.1 -2.98802 | opp_overlap 1683620 1683618 1683624, overlap 1683620 1683617 1683626 GATACAGAAGACAAA GACCCCTAT TTG ATAGGGGTC TCTGTGCGTTTGCTG TERM 665 1683644 - 1683624 - T 100 -14.1 -4.3277 | opp_overlap 1683624 1683620 1683617 1683626, overlap 1683620 1683618 GATACAGAAGACAAA GACCCCTAT TTG ATAGGGGTC TCTGTGCGTTTGCTG MSMEG_1597 1683954 - 1683664 - | transcription factor WhiB TERM 666 1685170 - 1685136 - g 71 -11.5 -3.54307 | gap 1, opp_overlap 1685162 AAGAGGTCCGCGAAA TCCGCGACGGCACCGC CGAT ACAGTG-CGTCGCAGA GGTGGCGTGTGGTCG MSMEG_1598 1684388 - 1685194 + | hypothetical protein MSMEG_1599 1685284 - 1685862 + | RNA polymerase sigma factor SigD MSMEG_1600 1685855 - 1687054 + | hypothetical protein MSMEG_1601 1687495 - 1687085 - | hypothetical protein guaB 1687637 - 1689178 + | inositol-5-monophosphate dehydrogenase MSMEG_1603 1689207 - 1690334 + | inositol-5-monophosphate dehydrogenase MSMEG_1604 1690403 - 1692139 + | FAD dependent oxidoreductase phoU 1692222 - 1692881 + | phosphate transport system regulatory protein PhoU TERM 667 1692906 - 1692873 - f 73 -6 -4.33417 | gap 1, overlap 1692875 CCGAGCCACAAGAAA CTCGCCTGATTACCG GCTAG CGGTAAACA-GCGGG TACGGAGCAGATCAC MSMEG_1606 1693036 - 1694649 + | benzoylformate decarboxylase TERM 668 1694745 - 1694732 - g 73 -9.5 -3.8377 | AACGGCGAGACCAAA GCGGC CCTG GCCGC CGAGATCACCACCAT TERM 669 1694944 - 1694926 - g 75 -16 -2.87132 | overlap 1694907 CGCGCTGGTGACACA GGTCGCCG ATG CGGCGACC CGGATCACCGGGATC MSMEG_1607 1694678 - 1695097 + | putative tautomerase MSMEG_1608 1697470 - 1695107 - | glycosyl transferase TERM 670 1697852 - 1697826 - H 87 -17.2 -2.79796 | TGGCACTCGACGACA CGACCGCGCGCC GCA GGCCCGCGGCCG CGGCGGCTTCCAGAT TERM 671 1698145 - 1698157 + H 75 -3.3 -4.83615 | overlap 1698142 ATAGTCGTCGAACAT GGCCT TCC ACGCC TTTTTGTGCACGCTG TERM 672 1699233 - 1699259 + G 72 -4.2 -4.57073 | overlap 1699240 GCGACCGGCGCCAAG CTGGTCACCGTC GAC GTCGCCGACCGG TTTTTGGAAGCGCTG guaA 1698411 - 1699973 + | bifunctional GMP synthase/glutamine amidotransferase protein MSMEG_1611 1699984 - 1700661 + | transcriptional regulator, TetR family protein, putative TERM 673 1701351 - 1701308 - g 70 -15.2 -2.78384 | overlap 1701340 1701341 GCCGTGGGCACCACA GCCGAGGTGCTCTCGCAGGA GCAG TCCGACAAGTGCACCGCGGC GGGCAAGCCGCCGGT MSMEG_1612 1700804 - 1701661 + | extracellular solute-binding protein, family protein 3 MSMEG_1613 1701672 - 1702463 + | ABC polar amino acid transporter, inner membrane subunit TERM 674 1702760 - 1702734 - g 93 -16.6 -3.92075 | opp_overlap 1702749, overlap 1702739 AGCCTGACCGACAAA CGCAAGGTCGGC ACC GCCGAGCTTGCG CGGCGCCGCCGCGAG TERM 675 1702749 - 1702781 + G 70 -12 -3.36452 | gap 1, opp_overlap 1702734 1702739 CGCAAGGTCGGCACC GCCGAGCTTGC-GCG GCGC CGCCGCGAGATCGGC TTCGTGTTCCAGCAT MSMEG_1614 1702467 - 1703264 + | glutamine transport ATP-binding protein GlnQ ggt 1703278 - 1704852 + | gamma-glutamyltranspeptidase TERM 676 1705262 - 1705299 + T 70 -11.3 -3.35996 | gap 2 ACAGCTGCAGCATGC CACCGTCG-C-CCGCGG TGAATT CCGCGGTGACGCCGGTG TTGTCGGTCGAGATG TERM 677 1706856 - 1706875 + T 76 -5.8 -4.58283 | gap 1 TGGGTCATGGGTTTG CCTTCT-GT AGC ACGAGAAGG TTTTTCACCAGGTTC MSMEG_1617 1708497 - 1706845 - | kumamolisin MSMEG_1618 1708825 - 1708535 - | hypothetical protein TERM 678 1708939 - 1708949 + H 72 -8.2 -4.03078 | GTGGCCCAGCCCCAT CCCG AAG CGGG TTTCTGGTGTCCTGA MSMEG_1619 1709112 - 1709237 + | hypothetical protein MSMEG_1620 1709234 - 1709941 + | hypothetical protein MSMEG_1622 1709944 - 1711521 + | putative DNA repair polymerase MSMEG_1621 1712564 - 1711512 - | pyrimidine-specific ribonucleoside hydrolase RihA MSMEG_1623 1714654 - 1712618 - | short chain dehydrogenase TERM 679 1713081 - 1713115 + g 71 -10.6 -3.75535 | opp_overlap 1713077, overlap 1713074 1713077 1713083 ACATCGGAGAACGCG TCCAGCGCGGCCTTGC TGG GCAGGTACGCGCTGTA TTTCGGTGTGTGTGC TERM 680 1713083 - 1713113 + g 76 -13.2 -3.45632 | opp_overlap 1713077, overlap 1713074 1713077 1713081 ATCGGAGAACGCGTC CAGCGCGGCCTTGC TGG GCAGGTACGCGCTG TATTTCGGTGTGTGT TERM 681 1713669 - 1713693 + g 72 -13.5 -3.21924 | overlap 1713668 TCGGGTACCGCGATC CCGGTGCCGCG CAG CGCGGTGTCGG TGTTGTCGGCGGTGA TERM 682 1714347 - 1714386 + g 73 -16.4 -2.66964 | gap 1, opp_overlap 1714336 1714333, overlap 1714344 ATCACGGCCCTGGTG CCGTCGACGTTGGCGGCGC GCT GTGCGGCCT-CGTCGACGG TGATGTCGTAGATCG MSMEG_1624 1714853 - 1715740 + | universal stress protein family protein TERM 683 1717074 - 1717113 + G 70 -12 -3.35679 | gap 1 GTTCAAGTTCCTGTT CCCGCTCATCGGCGGCCTG GTG CTGGCCGC-GGTGTTCGGG TTCTCGCTCAAGGAG MSMEG_1625 1715737 - 1717305 + | amino acid transporter, putative MSMEG_1626 1718188 - 1717307 - | putative DNA-binding protein MSMEG_1628 1718346 - 1719197 + | oxidoreductase, short chain dehydrogenase/reductase family protein MSMEG_1627 1719336 - 1719178 - | hypothetical protein MSMEG_1629 1720430 - 1719261 - | hypothetical protein MSMEG_1630 1721337 - 1720546 - | 2,5-dichloro-2,5-cyclohexadiene-1,4-diol dehydrogenase MSMEG_1631 1721434 - 1722288 + | DNA-binding protein dnaE2 1722325 - 1725612 + | error-prone DNA polymerase MSMEG_1632 1726479 - 1725589 - | hypothetical protein TERM 684 1726176 - 1726200 + g 75 -4.9 -4.57073 | gap 1, overlap 1726178 GTGCGGCGCGCTGGT CGGC-GGCCG CGAGTT CGGCCCGCAG TTTTTCGGCCGCGTC MSMEG_1634 1726761 - 1727360 + | forkhead-associated protein MSMEG_1635 1727405 - 1728046 + | nitroreductase family protein MSMEG_1636 1728528 - 1728064 - | RNA methyltransferase, TrmH family protein, group 2 TERM 685 1729760 - 1729715 - g 82 -16.7 -3.38272 | overlap 1729690 GATCATCACCGACAA CACCTCGGCGATCCCGGCCGC GGTC GAGGCCGAGGCCGCCGACGCG CGCAACGACGCCATC MSMEG_1637 1728945 - 1731728 + | periplasmic sensor signal transduction histidine kinase MSMEG_1638 1731725 - 1732132 + | roadblock/LC7 domain-contain protein MSMEG_1639 1732149 - 1732514 + | hypothetical protein MSMEG_1640 1732495 - 1733076 + | ATP/GTP-binding protein TERM 686 1733617 - 1733658 + G 77 -11.5 -3.85698 | gap 1, opp_overlap 1733609, overlap 1733622 TCGAACAGGCGCTCG CGTACGCCGCCGCGCACGGT CTG GCCGTCCACGGCGGC-TAGG TTTCTCACCGCGAGC TERM 687 1733622 - 1733654 + G 74 -16.9 -2.70354 | opp_overlap 1733609, overlap 1733617 CAGGCGCTCGCGTAC GCCGCCGCGCACGGT CTG GCCGTCCACGGCGGC TAGGTTTCTCACCGC MSMEG_1641 1733082 - 1733657 + | hypothetical protein TERM 688 1733702 - 1733739 + T 100 -24.5 -2.94099 | opp_overlap 1733707, overlap 1733707 CGGGAGTGCCCCCAA CAAAACTGCGCCTTTTC GCGT GAAAAGGCGCAGTTTTG TGTCTGCTCGGCAGA TERM 689 1733734 - 1733707 - T 100 -18.6 -4.63218 | opp_overlap 1733707 1733702 GTGCCCCCAACAAAA CTGCGCCTTTTC GCGT GAAAAGGCGCAG TTTTGTGTCTGCTCG TERM 690 1733707 - 1733734 + T 100 -18.6 -4.62984 | opp_overlap 1733707, overlap 1733702 GTGCCCCCAACAAAA CTGCGCCTTTTC GCGT GAAAAGGCGCAG TTTTGTGTCTGCTCG MSMEG_1642 1736459 - 1733760 - | ABC transporter, ATP-binding protein TERM 691 1736493 - 1736509 + H 73 -13.7 -2.78935 | TACTTCCCCCGGGCG CCGCTGC GCC GCAGCGG TGTCGTCCGACGTAT MSMEG_1643 1736549 - 1738318 + | hypothetical protein MSMEG_1644 1739228 - 1738323 - | hypothetical protein MSMEG_1645 1740454 - 1739234 - | NADH:flavin oxidoreductase/NADH oxidase MSMEG_1646 1742453 - 1741293 - | ribosomal RNA adenine dimethylase family protein MSMEG_1647 1740535 - 1741386 + | tetrahydrofolate dehydrogenase/cyclohydrolase FolD MSMEG_1648 1742683 - 1743300 + | putative transcriptional regulator MSMEG_1649 1743297 - 1744841 + | FAD dependent oxidoreductase MSMEG_1650 1745582 - 1744845 - | methyltransferase type 11 metX 1746721 - 1745579 - | homoserine O-acetyltransferase MSMEG_1652 1748073 - 1746742 - | O-acetylhomoserine aminocarboxypropyltransferase MSMEG_1653 1748419 - 1748300 - | hypothetical protein MSMEG_1654 1748543 - 1750774 + | isocitrate dehydrogenase, NADP-dependent TERM 692 1750795 - 1750826 + T 100 -23.2 -3.63627 | TCCCGAGATTGCACT GAGGGACAGGATCC GCGT GGATCCTGTCCCTC TTTGCAATCTCGGCG MSMEG_1655 1751690 - 1750851 - | hydrolase, alpha/beta fold family protein, putative xth 1751775 - 1752596 + | exodeoxyribonuclease III trpS 1752612 - 1753628 + | tryptophanyl-tRNA synthetase MSMEG_1658 1753643 - 1754680 + | ribonuclease, putative MSMEG_1659 1755040 - 1754723 - | multidrug resistance protein, SMR family protein MSMEG_1660 1755150 - 1756019 + | oxidoreductase, 2-nitropropane dioxygenase family protein MSMEG_1661 1757215 - 1756022 - | D-alanyl-D-alanine carboxypeptidase TERM 693 1756600 - 1756626 + g 72 -13.7 -3.11291 | gap 1, overlap 1756584 1756583 TGGCGGCCCTGGTGT CGC-GGCCGCCG AGTT TGGCGGCCAGCG TGTTGAGCTTCTGCA TERM 694 1757379 - 1757333 - R 74 -11 -3.63968 | gap 2, opp_overlap 1757325 1757325 1757333, overlap 1757326 1757325 CCCGAAACGCCGAAA CGGCATTCCGTCAGG-G-CGTT ACTCG AACTTCTCCTGACGGCATGCCG TTTCGGCGGATGATC TERM 695 1757333 - 1757379 + r 72 -11 -3.54741 | gap 2, opp_overlap 1757326 1757325 1757333, overlap 1757325 1757325 CCCGAAACGCCGAAA CGGCATTCCGTCAGG-G-CGTT ACTCG AACTTCTCCTGACGGCATGCCG TTTCGGCGGATGATC MSMEG_1662 1758779 - 1757394 - | hypothetical protein MSMEG_1663 1759246 - 1758776 - | transcriptional regulator, AsnC family protein TERM 696 1758833 - 1758823 - GR 75 -6.8 -4.43877 | CAAGTTTCAAATAAA CGAG GGT CTCG GTGGATATCACTCCC MSMEG_1664 1759499 - 1759209 - | hypothetical protein TERM 697 1759621 - 1759638 + GH 74 -12.7 -3.29144 | GGGCGGGCGCAACCC CGGCCGA GCGT TCGGCCG TTCTGGCGAAGCTGG TERM 698 1759756 - 1759768 + GH 70 -3.4 -4.41348 | ACGTACCCGGCAGCG TCGA CAACA TCGA TTTCTTTGCCGGCGC MSMEG_1665 1759434 - 1760915 + | gamma-aminobutyraldehyde dehydrogenase TERM 699 1760927 - 1760967 + FH 91 -19.9 -2.62616 | opp_overlap 1760927 1760945 1760946, overlap 1760916 ATAGCGCCGAGACGA CGGTTTGTGGTGTGGAAAC GCG GTTTTCCCGCCACAAACCG TAGTGTCGGCGGTCG TERM 700 1760967 - 1760927 - fH 77 -15.5 -2.62735 | opp_overlap 1760916 1760927, overlap 1760945 1760946 ATAGCGCCGAGACGA CGGTTTGTGGTGTGGAAAC GCG GTTTTCCCGCCACAAACCG TAGTGTCGGCGGTCG MSMEG_1666 1761019 - 1761933 + | RNA polymerase sigma factor SigJ MSMEG_1668 1761933 - 1762454 + | pyridoxamine 5'-phosphate oxidase family protein TERM 701 1763111 - 1763055 - T 100 -30.6 -3.5882 | gap 1, opp_overlap 1763048, overlap 1763108 GACAGGACCCCGAAA CGAGTGTTGGCTTGTGTTCCA-GATCC GGAA GGATCCTGGTACACAAGCCAACACTCG ACGACAAGAAACTCA TERM 702 1763127 - 1763148 + T 74 -10.1 -3.68827 | opp_overlap 1763124 1763123 1763119 1763127 ACGACAAGAAACTCA GCGCGCG AACATCAG CGCGCGC TTTACCTCCTGGATC sdhB 1763909 - 1763124 - | succinate dehydrogenase iron-sulfur subunit sdhA 1765666 - 1763912 - | succinate dehydrogenase flavoprotein subunit TERM 703 1764412 - 1764452 + g 74 -13.9 -3.25823 | AGTTGTGGTTCTGCG CGTACTCGGCCGCGGCG ATGCCGG CGCGGCGGCCGAACACG TTGATGTCCAGCAGC MSMEG_1671 1766147 - 1765677 - | succinate dehydrogenase hydrophobic membrane anchor protein SdhD sdhC 1766560 - 1766144 - | succinate dehydrogenase, cytochrome b556 subunit TERM 704 1766469 - 1766443 - G 89 -3 -5.36689 | gap 1 AAAGGAAAAAGAAAA TCGTGGCACCG GTAATG CGGTG-CAAGA CCCAAGACCACATCC cdd 1766790 - 1767176 + | cytidine deaminase MSMEG_1674 1767342 - 1767247 - | hypothetical protein deoA 1767305 - 1768546 + | thymidine phosphorylase add 1768749 - 1769849 + | adenosine deaminase MSMEG_1678 1769956 - 1770891 + | transcriptional regulator, LysR family protein aspA 1772305 - 1770884 - | aspartate ammonia-lyase MSMEG_1679 1773459 - 1772302 - | AmiB MSMEG_1680 1774130 - 1773456 - | hypothetical protein MSMEG_1681 1774570 - 1774127 - | endoribonuclease L-PSP superfamily protein TERM 705 1774456 - 1774490 + g 74 -12.8 -3.66784 | opp_overlap 1774447 1774450, overlap 1774457 GATAGACGACGCCAC CCGCGACGACGGCCTG GCA CAGGTCGTTGTCGAGA TTCTGTTCAGGGTAG TERM 706 1774457 - 1774489 + g 74 -16.3 -2.79749 | opp_overlap 1774447 1774450, overlap 1774456 ATAGACGACGCCACC CGCGACGACGGCCTG GCA CAGGTCGTTGTCGAG ATTCTGTTCAGGGTA MSMEG_1682 1775832 - 1774567 - | flavin-containing monooxygenase FMO TERM 707 1774980 - 1774990 + g 72 -6.8 -4.29325 | opp_overlap 1774979 GCATGGAAAGATAGT TGGC GTC GCCA TTTTCGATGTTGGTA MSMEG_1683 1777435 - 1775984 - | cytosine/purine/uracil/thiamine/allantoin permease family protein MSMEG_1684 1778873 - 1777578 - | hypothetical protein MSMEG_1685 1779114 - 1778947 - | hypothetical protein MSMEG_1686 1780178 - 1779111 - | NPL/P60-family protein secreted protein MSMEG_1687 1780475 - 1780185 - | hypothetical protein TERM 708 1780486 - 1780520 + r 100 -15.8 -4.25104 | AGCATGACGTTATGA CGCACGGCAGCG CCGTTCGGTTC CGCTGCCGTGCG TTTTCGTCAGCCCGC MSMEG_1688 1780937 - 1780527 - | cupin domain-containing protein MSMEG_1689 1781672 - 1780950 - | 3-oxoacyl-[acyl-carrier-protein] reductase MSMEG_1690 1782320 - 1781688 - | putative ECF sigma factor RpoE1 MSMEG_1691 1785062 - 1782369 - | transcriptional regulatory protein MSMEG_1692 1785177 - 1786091 + | ECF-family protein RNA polymerase sigma factor MSMEG_1693 1787828 - 1786092 - | succinate dehydrogenase [ubiquinone] flavoprotein subunit TERM 709 1786392 - 1786406 + g 73 -10 -3.85698 | GTCGGACAACTGCGC CTCGAC GTC GTCGAG TTTCTCCAACCCGAC upp 1787883 - 1788506 + | uracil phosphoribosyltransferase MSMEG_1695 1790147 - 1788531 - | phosphoglucomutase/phosphomannomutase MSMEG_1696 1790620 - 1790144 - | regulatory protein, MarR MSMEG_1698 1790726 - 1791835 + | putative ammonia monooxygenase superfamily protein MSMEG_1697 1792557 - 1791793 - | hypothetical protein TERM 710 1792123 - 1792105 - G 73 -7.4 -4.20368 | opp_overlap 1792120 GTAGTTGAACAGAAA CCACCG GTCGTGG CGGTGG TCGACGTCGGCGATG MSMEG_1699 1793730 - 1792582 - | pentachlorophenol 4-monooxygenase MSMEG_1700 1793829 - 1794374 + | TetR-family protein transcriptional regulator MSMEG_1701 1795175 - 1794381 - | purine nucleoside phosphorylase TERM 711 1795992 - 1795981 - g 73 -7.2 -4.20696 | opp_overlap 1795980 1795981 GCACGAACTGGAAAA CCGG ATGG CCGG ATGTTTCGCGGCCGG MSMEG_1702 1795223 - 1796407 + | amidohydrolase MSMEG_1703 1796404 - 1797576 + | amidohydrolase MSMEG_1704 1797877 - 1798974 + | ABC transporter MSMEG_1705 1798971 - 1800500 + | D-xylose transport ATP-binding protein XylG MSMEG_1706 1800501 - 1801760 + | xylose transport system permease protein XylH MSMEG_1707 1802463 - 1801804 - | phosphatase YfbT MSMEG_1708 1803478 - 1802474 - | ribose operon repressor, putative MSMEG_1709 1804524 - 1803499 - | inner membrane ABC transporter permease protein YjfF MSMEG_1710 1805594 - 1804521 - | ribose transport system permease protein RbsC TERM 712 1804582 - 1804603 + g 79 -15.1 -3.28712 | TCGACGGCGGGTACG GGCGCGCGC CGGC GCGTGCGCC TTCTGCCGAACAGCG MSMEG_1711 1807099 - 1805591 - | ATP binding protein of ABC transporter TERM 713 1806422 - 1806448 + g 78 -14.4 -3.66178 | GTCGGATTTCGGCAG CTCGGCGGTGAG GTA CTCGCCGACGAG TTTGCCGTTGCGCAG MSMEG_1712 1808108 - 1807122 - | ABC transporter periplasmic-binding protein YtfQ araB 1808508 - 1810199 + | ribulokinase MSMEG_1714 1810196 - 1810891 + | L-ribulose-5-phosphate 4-epimerase araA 1810894 - 1812399 + | L-arabinose isomerase MSMEG_1716 1812681 - 1812956 + | IS3 family protein element, transposase orfA MSMEG_1717 1814966 - 1813566 - | ISMsm8, transposase MSMEG_1720 1815873 - 1816148 + | IS1137, transposase orfA TERM 714 1816161 - 1816194 + G 79 -18.9 -2.63596 | overlap 1816165 TAGTCGTGGAGTTCA TCAGCGCCCACCAGC ACAT GCGGGTGGGCGTTGA TGGTCTCAAGTGGGG TERM 715 1816165 - 1816190 + G 80 -16.1 -3.24925 | overlap 1816161 CGTGGAGTTCATCAG CGCCCACCAGC ACAT GCGGGTGGGCG TTGATGGTCTCAAGT MSMEG_1721 1816151 - 1817104 + | IS1137, transposase orfB MSMEG_1722 1817806 - 1817135 - | hypothetical protein TERM 716 1818065 - 1818081 + G 78 -6.5 -4.55697 | overlap 1818066 ATCGCATCGGTGGAC ACGATCG TGA CGATCGC TTTGTTTGTCGCGCT MSMEG_1723 1818047 - 1818370 + | hypothetical protein MSMEG_1724 1818885 - 1818478 - | hypothetical protein TERM 717 1819651 - 1819611 - g 82 -11.8 -4.15565 | overlap 1819616 GGGATCATGGGAAAA GCACACGCGCTCTTGGAG TCTCT CTCCGAGAGCGCGGACAC CGACACGCCGCCGAC TERM 718 1819646 - 1819616 - g 78 -16.9 -3.10537 | overlap 1819611 CATGGGAAAAGCACA CGCGCTCTTGGAG TCTCT CTCCGAGAGCGCG GACACCGACACGCCG MSMEG_1725 1819287 - 1819676 + | putative transposase MSMEG_1726 1819676 - 1820689 + | transposase MSMEG_1728 1821176 - 1821511 + | ISMsm1, transposase orfA MSMEG_1730 1821508 - 1822437 + | ISMsm1, transposase orfB TERM 719 1823981 - 1823995 + GT 74 -11.4 -3.63276 | opp_overlap 1823978, overlap 1823975 TGTCGGCAAGTACCA CCGCCA CCG TGGCGG TTCTGCTTGTTCTCA TERM 720 1824198 - 1824180 - gT 79 -6.6 -4.58283 | CAAGTCTCGCAAAAA CTACGCCG CCA CGTCGCAG ATCACCGTGGCCTCG TERM 721 1824266 - 1824252 - gT 80 -4.9 -4.8048 | overlap 1824253 1824254 CCGCCACATCAAAAA CCGGC ACCTG GCCGA TGCCATCGACATGTG MSMEG_1731 1825807 - 1824488 - | IS6120, transposase MSMEG_1732 1823395 - 1824546 + | transposase IS116/IS110/IS902 MSMEG_1733 1826089 - 1826988 + | hypothetical protein MSMEG_1734 1827543 - 1827076 - | hypothetical protein MSMEG_1735 1827585 - 1829000 + | flavoprotein disulfide reductase MSMEG_1736 1829060 - 1830805 + | glycerol-3-phosphate dehydrogenase 2 MSMEG_1737 1830802 - 1831677 + | RNA pseudouridine synthase family protein MSMEG_1738 1832286 - 1831699 - | transmembrane protein TERM 722 1832271 - 1832298 + g 73 -9.8 -3.91984 | CCCACCATCGACGCC GGCTGGTGACGG GCAC TTGTCACCCGCC TTGTTTCGGGGGTGT MSMEG_1740 1832435 - 1833205 + | dehydrogenase/reductase SDR family protein member 4 MSMEG_1739 1833962 - 1833174 - | enoyl-CoA hydratase/isomerase family protein MSMEG_1741 1834660 - 1833986 - | TetR-family protein transcriptional regulator MSMEG_1742 1834732 - 1835823 + | oxidoreductase MSMEG_1743 1835832 - 1836980 + | Fatty acid desaturase MSMEG_1744 1837967 - 1837050 - | hypothetical protein TERM 723 1837953 - 1837997 + g 74 -14.5 -3.06261 | gap 1 GAGCGTGGCGGTCCA CTTGCGCGATGTCATCGCGT CTTCAA ACGC-AGGATATCGCGCAAG TATTCGCGGTTCGGC MSMEG_1745 1838657 - 1838043 - | transcriptional regulator MSMEG_1746 1838767 - 1840137 + | 6-hydroxy-D-nicotine oxidase MSMEG_1747 1840251 - 1840865 + | RNA polymerase sigma-70 factor TERM 724 1840979 - 1841015 + GF 74 -13 -3.18023 | overlap 1840978 1840983 GACGCACTTTCCGAC GGCTACGCCG-GTCCGCG CAG CGCGGGCACGGCG-ATCC TGTTCCTGCTGATGC MSMEG_1748 1840862 - 1841299 + | hypothetical protein MSMEG_1749 1842214 - 1841333 - | putative monooxygenase MSMEG_1750 1841151 - 1841429 + | hypothetical protein MSMEG_1751 1843281 - 1842253 - | norsolorinic acid reductase MSMEG_1752 1843448 - 1843338 - | hypothetical protein mtnN 1843365 - 1844117 + | MTA/SAH nucleosidase MSMEG_1754 1844249 - 1844629 + | hypothetical protein MSMEG_1755 1845010 - 1844642 - | anti-sigm factor, ChrR MSMEG_1756 1845816 - 1845058 - | endonuclease VIII and DNA n-glycosylase with an AP lyase activity TERM 725 1845146 - 1845127 - G 77 -15 -3.14211 | ATCGGTCTGGATCAA CGTGCCGC AGCG GCGGCACG GTTCACCGGCGCGGC MSMEG_1757 1850342 - 1845819 - | DEAD/DEAH box helicase MSMEG_1758 1850577 - 1850404 - | hypothetical protein MSMEG_1759 1850576 - 1850854 + | hypothetical protein MSMEG_1761 1850826 - 1852142 + | integral membrane protein MSMEG_1760 1852925 - 1852110 - | short-chain dehydrogenase/reductase SDR MSMEG_1762 1854547 - 1852964 - | piperideine-6-carboxylic acid dehydrogenase MSMEG_1763 1854610 - 1855083 + | leucine-responsive regulatory protein MSMEG_1764 1855136 - 1856500 + | L-lysine aminotransferase MSMEG_1765 1857038 - 1856508 - | restriction endonuclease family protein MSMEG_1766 1857176 - 1857421 + | hypothetical protein MSMEG_1767 1857437 - 1857826 + | hypothetical protein MSMEG_1768 1857823 - 1858440 + | hypothetical protein MSMEG_1769 1858494 - 1858793 + | UsfY protein TERM 726 1858871 - 1858816 - T 79 -6.1 -4.6644 | opp_overlap 1858867, overlap 1858829 AAGATAGCGGAAAAA GATAGC-GGAAAAAGATGGCCCAGCCG AAAT CGGCTGGGCCATCTGCGTACTGCG-CC GCATCAGGGTCGCTG TERM 727 1858858 - 1858829 - T 100 -23.7 -4.6644 | overlap 1858816 AAGATAGCGGAAAAA GATGGCCCAGCCG AAAT CGGCTGGGCCATC TGCGTACTGCGCCGC MSMEG_1770 1859117 - 1858875 - | hypothetical protein MSMEG_1771 1859306 - 1859974 + | methylase, putative MSMEG_1772 1859971 - 1860186 + | hypothetical protein TERM 728 1860241 - 1860205 - T 100 -26.8 -3.92869 | opp_overlap 1860205 GCAGCCACCGACAAA CGATTTCGCCCCCACC GTCAT GGTGGGGGCGAAATCG TTTGTGAATGATGAC TERM 729 1860205 - 1860241 + T 100 -27.5 -3.93695 | opp_overlap 1860205 GCAGCCACCGACAAA CGATTTCGCCCCCACCG TCA TGGTGGGGGCGAAATCG TTTGTGAATGATGAC MSMEG_1773 1861290 - 1860268 - | hypothetical protein TERM 730 1861531 - 1861480 - R 100 -24.6 -3.29043 | opp_overlap 1861477, overlap 1861467 1861468 1861482 AAGCTGGGCCCAGAA TAGTTCCGGACCGCCGTCCGCATC CGGA AATGGGGACGACGGCCCGGAACCA ACCTGGTGTGCCGGA TERM 731 1861529 - 1861482 - R 100 -25 -3.21276 | opp_overlap 1861477, overlap 1861467 1861468 1861480 GCTGGGCCCAGAATA GTTCCGGACCGCCGTCCGCATC CGGA AATGGGGACGACGGCCCGGAAC CAACCTGGTGTGCCG MSMEG_1774 1862041 - 1861547 - | hypothetical protein TERM 732 1862788 - 1862827 + G 90 -13.6 -4.0641 | gap 1 CGATCACGCGATCAC CGATCAGCTGGCTCGCCTG CGC CGGGCGGGC-AACTGGTCG TTTCTGTCGCTCCCG MSMEG_1775 1862204 - 1863577 + | cytochrome P450 monooxygenase MSMEG_1776 1864526 - 1863597 - | ribonuclease Z TERM 733 1863932 - 1863903 - G 72 -13.5 -3.21099 | opp_overlap 1863909, overlap 1863904 GGTGTCCATCACGAA GGCGAACCGCTGC CCGG GCCGCGGTTCGCT GACCTGGGTGAGGTG TERM 734 1863931 - 1863904 - G 77 -17 -2.52516 | opp_overlap 1863909, overlap 1863903 GTGTCCATCACGAAG GCGAACCGCTGC CCGG GCCGCGGTTCGC TGACCTGGGTGAGGT MSMEG_1777 1864669 - 1864974 + | UsfY protein MSMEG_1778 1865326 - 1864985 - | hypothetical protein MSMEG_1779 1865714 - 1865313 - | hypothetical protein MSMEG_1780 1866940 - 1865711 - | hypothetical protein MSMEG_1781 1867401 - 1866940 - | hypothetical protein MSMEG_1782 1868306 - 1867419 - | oxidoreductase, short chain dehydrogenase/reductase family protein MSMEG_1783 1868551 - 1868321 - | hypothetical protein MSMEG_1784 1869657 - 1868641 - | type I topoisomerase MSMEG_1785 1868617 - 1869747 + | hypothetical protein TERM 735 1870318 - 1870261 - g 78 -9.9 -4.13304 | gap 4, opp_overlap 1870262 1870270 1870300, overlap 1870262 AAACGATCCTGAAAA CGGCACTGACCCCCGCGGGGTGTTC-GGG ATAT CCCTGACCACCCGGCGGAGGCC-G--CCG ACTGCTTCAGACGCG MSMEG_1787 1869761 - 1870345 + | RsbW protein MSMEG_1786 1870770 - 1870342 - | STAS domain-containing protein MSMEG_1788 1871258 - 1871512 + | hypothetical protein MSMEG_1789 1871520 - 1871675 + | hypothetical protein MSMEG_1790 1871713 - 1871970 + | hypothetical protein TERM 736 1872043 - 1871994 - f 100 -15 -4.58395 | gap 1, opp_overlap 1871997 1871997, overlap 1872005 GCCACCGGCGAAAAA CCCCGCACGAAGGGCCCCGCTGA TCATC TCAGCGGGGCCCTTCCC-CGTCG TTCTGAGGTTGATCG TERM 737 1871997 - 1872043 + F 80 -13.8 -3.37464 | gap 2, opp_overlap 1871994 1872005, overlap 1871997 ACCGGCGAAAAACCC CG-C-ACGAAGGGCCCCGCTGA TCATC TCAGCGGGGCCCTTCCCCGTCG TTCTGAGGTTGATCG TERM 738 1871997 - 1872040 + F 87 -17.5 -2.84794 | gap 1, opp_overlap 1871994 1872005, overlap 1871997 ACCGGCGAAAAACCC CGCACGAAGGGCCCCGCTGA TCATC TCAGCGGGGCCCTTCCC-CG TCGTTCTGAGGTTGA TERM 739 1872033 - 1872005 - f 100 -21.8 -3.16323 | opp_overlap 1871997 1871997, overlap 1871994 AAAACCCCGCACGAA GGGCCCCGCTGA TCATC TCAGCGGGGCCC TTCCCCGTCGTTCTG MSMEG_1791 1872145 - 1872453 + | UsfY protein TERM 740 1872468 - 1872492 + T 70 -13.6 -2.51547 | overlap 1872467 1872465 ATCGGCCGGGCGGAC CTGCGGGCGA CTGGC TCGTCCGCAG ATGTTCGTGTGCCCG MSMEG_1792 1872858 - 1872508 - | hypothetical protein MSMEG_1794 1872888 - 1873895 + | dehydrogenase MSMEG_1793 1874426 - 1873863 - | membrane protein MSMEG_1795 1875648 - 1874566 - | 2-deoxy-scyllo-inosamine dehydrogenase MSMEG_1796 1877078 - 1875645 - | membrane protein MSMEG_1797 1877791 - 1877075 - | salicylate esterase TERM 741 1877148 - 1877168 + g 83 -8.2 -4.57569 | opp_overlap 1877135 ACCTCGTGACCGCCC CGGACGCG GTGAA CGCGTACG TTTTTCAGCCGCTCG MSMEG_1798 1879104 - 1877776 - | major facilitator superfamily protein TERM 742 1879363 - 1879346 - g 71 -11.3 -3.61398 | GTGGTGGTGGAAGAA GGCTCGT TGGG ACGAGCC GCGGCGCGGCTGCAC MSMEG_1799 1879301 - 1880209 + | transcriptional regulator MSMEG_1800 1880365 - 1880234 - | hypothetical protein MSMEG_1801 1880491 - 1880622 + | hypothetical protein MSMEG_1802 1880724 - 1881143 + | ChaB protein TERM 743 1881279 - 1881257 - g 71 -11.2 -3.56643 | opp_overlap 1881264, overlap 1881260 GTCAGATGGCGGAAA CACCCGCTCG GGG CGAGCGGTCG GTAGAGATCCGCGTC MSMEG_1803 1881247 - 1881663 + | RsbW protein TERM 744 1881783 - 1881752 - g 74 -13.7 -3.31144 | CCGCCAGCGCGAGAA GATCGTCGAGCGG TGCCTT CCGCTCGCCGACC ACATCGCGCGGCGCT MSMEG_1804 1881660 - 1882412 + | RNA polymerase sigma factor SigF MSMEG_1806 1882438 - 1882986 + | hypothetical protein MSMEG_1805 1883332 - 1882976 - | hypothetical protein MSMEG_1807 1885229 - 1883433 - | acetyl-/propionyl-coenzyme A carboxylase alpha chain TERM 745 1885514 - 1885468 - R 93 -15.7 -3.91072 | gap 1 CGAAATTCTCAGAAA CCGCGTCGGGGTGTCGGCCGGC GATC GCCGGCCGCCGCACC-ACGTGG TGACGGAGGGCTACC MSMEG_1808 1886034 - 1885624 - | Fe-S metabolism associated SufE MSMEG_1809 1886924 - 1886037 - | putative thiosulfate sulfurtransferase MSMEG_1810 1887283 - 1887074 - | hypothetical protein maf 1888092 - 1887457 - | Maf-like protein MSMEG_1812 1888473 - 1888189 - | hypothetical protein MSMEG_1813 1890125 - 1888497 - | propionyl-CoA carboxylase beta chain MSMEG_1814 1890327 - 1890539 + | hypothetical protein MSMEG_1815 1891139 - 1890966 - | hypothetical protein TERM 746 1891155 - 1891128 - G 70 -9 -3.95324 | opp_overlap 1891129, overlap 1891125 1891129 GACGGCGAAGAAGAA CCCGCCGCCCAC GACG ATGGGCCGCGGT TCTGGCGTCGACGGC TERM 747 1892639 - 1892651 + H 79 -10.5 -4.07568 | opp_overlap 1892634 GGAAACCATACCGCC GCGCG TAC CGCGC TTTTCCGCCGACCGC MSMEG_1818 1892734 - 1893252 + | membrane flanked domain-containing protein MSMEG_1817 1893878 - 1893207 - | transmembrane protein purK 1893955 - 1895181 + | phosphoribosylaminoimidazole carboxylase ATPase subunit TERM 748 1895388 - 1895339 - g 71 -11.1 -3.66018 | GGACTACGCGAAGAA CGCCGCCGACCGCGGCATCGAGG TGAT CATCGCCGGCGCGGGCGGTGCCG CGCACCTGCCCGGGA purE 1895208 - 1895687 + | phosphoribosylaminoimidazole carboxylase, catalytic subunit TERM 749 1895705 - 1895735 + F 81 -15.4 -3.03243 | overlap 1895727 CGCCCCTCACGCGCC CGGCTGCGGCGGTG GAG TATCGCTGCGGCCG TCTTCCGGCATCGGT MSMEG_1821 1896033 - 1897202 + | acyl-CoA dehydrogenase MSMEG_1822 1897225 - 1898037 + | biotin-[acetyl-CoA-carboxylase] ligase MSMEG_1823 1898817 - 1898113 - | hypothetical protein MSMEG_1824 1900321 - 1898840 - | transcriptional regulator, LytR family protein rfbD 1900308 - 1901291 + | dTDP-4-dehydrorhamnose reductase MSMEG_1826 1901315 - 1902184 + | dTDP-RhA:a-D-GlcNAc-diphosphoryl polyprenol, a-3-L-rhamnosyl transferase MSMEG_1827 1903792 - 1903244 - | hydrolase, nudix family protein, putative MSMEG_1829 1905153 - 1903789 - | F420-0--gamma-glutamyl ligase cofD 1906133 - 1905150 - | LPPG:FO 2-phospho-L-lactate transferase MSMEG_1831 1906425 - 1906814 + | transcription factor WhiB MSMEG_1832 1907319 - 1906855 - | hypothetical protein MSMEG_1833 1907407 - 1907826 + | hypothetical protein manB 1907957 - 1909375 + | phosphomannomutase/phosphoglucomutase MSMEG_1835 1909372 - 1910454 + | TobH protein manA 1910546 - 1911685 + | mannose-6-phosphate isomerase, class I MSMEG_1837 1913127 - 1911718 - | secreted protein MSMEG_1838 1913166 - 1914650 + | cationic amino acid transporter MSMEG_1839 1914807 - 1916039 + | alkane 1-monooxygenase TERM 750 1916119 - 1916087 - g 71 -11.9 -3.62572 | TACGACGAGGCGAAA GGTGCTGCGCGGGAA GGT TTTCCGCCCGGCACC GCGTGGGACGACGTT MSMEG_1840 1916036 - 1916209 + | rubredoxin MSMEG_1841 1916206 - 1916388 + | rubredoxin TERM 751 1916783 - 1916797 + G 71 -10 -3.81929 | overlap 1916768 GGCGACGTGTACGCG GCCTTC CTG GAAGGC TTTCGTGCGTTCTTC MSMEG_1842 1916396 - 1917121 + | transcriptional regulator, TetR family protein TERM 752 1917199 - 1917225 + T 74 -14.5 -2.52933 | gap 1, overlap 1917198 GGGTTGTCGGCATGA GTGTGCACGCGG CCCC CCGCG-GCACAC ATTCATGCGTTCACA TERM 753 1918755 - 1918782 + T 100 -21.4 -3.79747 | opp_overlap 1918755, overlap 1918775 CCCGGACACGCGAAA GTCCCCGGAACC CTTG GGTTCCGGGGAC TTTCGTGATCAGTGC TERM 754 1918782 - 1918755 - T 100 -21.4 -3.63627 | opp_overlap 1918755 1918775 CCCGGACACGCGAAA GTCCCCGGAACC CTTG GGTTCCGGGGAC TTTCGTGATCAGTGC MSMEG_1844 1919315 - 1918791 - | hypothetical protein MSMEG_1845 1919999 - 1919373 - | YghA protein MSMEG_1846 1921031 - 1920009 - | polysulphide reductase, NrfD MSMEG_1847 1921969 - 1921055 - | 4Fe-4S ferredoxin, iron-sulfur binding protein TERM 755 1922737 - 1922686 - R 74 -12.9 -3.21099 | gap 2, opp_overlap 1922703 1922719 GGCCTGCATCACGAA CGGGTCGTCGCCGTGCAGCGCCTCG ACAC CGACG-GC-GCTCGGCGACGGCCGG TAGTCGGGCGGCTTG selB 1927136 - 1925424 - | selenocysteine-specific translation elongation factor TERM 756 1926760 - 1926736 - G 70 -14.9 -2.82516 | GTGCCGAGCACCACA CGCGCGTCCGG AAT CCGGTCGCGCA CCTGGGCGATGGCGC selA 1928404 - 1927124 - | selenocysteine synthase selD 1928562 - 1929554 + | selenide, water dikinase MSMEG_1854 1931586 - 1932791 + | valosin containing protein-1 MSMEG_1855 1932788 - 1933810 + | TPR repeat-containing protein MSMEG_1856 1934534 - 1933836 - | hypothetical protein TERM 757 1934746 - 1934804 + H 79 -14.5 -2.99273 | gap 1, opp_overlap 1934743 CTCCGCCGAGAAGGG CGGGCCTCCCTCGAT-GCTGCTGGTGTC TGAC GCCAACAGCTCCCGTCGAAGGAGGCCCG CTTTCTCATGCTCAC TERM 758 1935646 - 1935674 + G 83 -20.4 -2.78384 | GGCACCCGGATGCGG GCCACCGCTGAC GGGCG GTCAGCGGTGGC TGTGGTGGCCAAGAC MSMEG_1857 1934812 - 1936173 + | transposase IstA protein, putative TERM 759 1936176 - 1936160 - f 70 -5.1 -4.36914 | GGGCCGCCCAGAAAA GGACCAT CCA ATGACCC CCACGCCACGGACCG TERM 760 1936763 - 1936781 + G 83 -12.4 -3.97689 | overlap 1936764 1936766 CTATTTGCCGCTGCC TGCCGAGG CCG CCTCGGCG TTGTTTCAGGTTGTC MSMEG_1858 1936170 - 1937024 + | putative transposition helper protein MSMEG_1859 1937322 - 1937032 - | hypothetical protein MSMEG_1860 1937530 - 1937342 - | hypothetical protein MSMEG_1861 1938472 - 1937660 - | hypothetical protein MSMEG_1862 1939568 - 1938555 - | transposase MSMEG_1863 1939957 - 1939568 - | putative transposase TERM 761 1939593 - 1939633 + g 82 -11.8 -4.15565 | overlap 1939598 GTCGGCGGCGTGTCG GTGTCCGCGCTCTCGGAG AGAGA CTCCAAGAGCGCGTGTGC TTTTCCCATGATCCC TERM 762 1939598 - 1939628 + g 78 -16.9 -3.10537 | overlap 1939593 CGGCGTGTCGGTGTC CGCGCTCTCGGAG AGAGA CTCCAAGAGCGCG TGTGCTTTTCCCATG MSMEG_1864 1940354 - 1940145 - | transposase MSMEG_1865 1940497 - 1941963 + | IS1549, transposase MSMEG_1866 1943023 - 1942190 - | transposase B MSMEG_1867 1943334 - 1943053 - | transposase MSMEG_1868 1943838 - 1943545 - | hypothetical protein MSMEG_1869 1944624 - 1943875 - | hypothetical protein MSMEG_1870 1948496 - 1944699 - | hypothetical protein TERM 763 1946664 - 1946682 + g 70 -3.8 -4.46212 | CGAGTTGGACTCTGC CGACGT ATGGGGA GCGTCG TTTTGTGCTGCGGGC TERM 764 1947165 - 1947191 + g 73 -7.9 -4.15788 | ATCGAGGGGCGGAGA GTCCGCGTGGT CGAAC GCCCTGCGGAC TTTGTTGACACCCTT MSMEG_1871 1948774 - 1948496 - | hypothetical protein MSMEG_1872 1949663 - 1948794 - | hypothetical protein MSMEG_1873 1949753 - 1950385 + | thymidylate kinase mtrA 1950437 - 1951123 + | DNA-binding response regulator MtrA TERM 765 1951546 - 1951519 - g 74 -14.8 -3.01791 | opp_overlap 1951544, overlap 1951498 AGTTGGCGCGCAACA CGCTCGTCGACC GCAA GGCCGACGTGCG TGCGGACATGGCCGG MSMEG_1875 1951266 - 1952852 + | sensor histidine kinase MtrB MSMEG_1876 1952849 - 1954606 + | lipoprotein LpqB MSMEG_1877 1954646 - 1955299 + | hypothetical protein MSMEG_1878 1955596 - 1956288 + | S30AE family protein TERM 766 1956373 - 1956317 - T 73 -12.5 -3.3862 | gap 3, opp_overlap 1956333, overlap 1956309 1956307 1956310 ACAAACAGCCGACAA CCCACAGTCGGCGGGATCGCACTCCGGA GGTT TCCGGAGTGCGATTTCAC-G--TGTGGG CCGGTTCACGCGGGC TERM 767 1956333 - 1956360 + T 100 -20 -3.63627 | opp_overlap 1956317 CCACAGTCGGCGGGA TCGCACTCCGGA GGTT TCCGGAGTGCGA TTTCACGTGTGGGCC MSMEG_1879 1956488 - 1956363 - | hypothetical protein TERM 768 1959176 - 1959152 - g 72 -13.5 -3.14211 | overlap 1959156 1959157 ATCGGTGGCCACCAA GGAACGCGCGG AGG CCGAGCGTCCC GCTCCGGCGTTGCGC secA 1956525 - 1959386 + | preprotein translocase subunit SecA MSMEG_1880 1959925 - 1959383 - | hypothetical protein MSMEG_1882 1960095 - 1961504 + | acyltransferase, ws/dgat/mgat subfamily protein TERM 769 1961628 - 1961612 - g 77 -3.7 -4.72986 | GACGCGGACGAAAAA TCGGT AACGAAA ACCGA AAAAGTTCTCAAATC MSMEG_1883 1961567 - 1963423 + | glycine betaine transporter OpuD MSMEG_1884 1963433 - 1963930 + | hypothetical protein MSMEG_1885 1963982 - 1965133 + | 2Fe-2S iron-sulfur cluster binding domain-containing protein MSMEG_1886 1965203 - 1966459 + | Fatty acid desaturase TERM 770 1966484 - 1966520 + F 100 -21.8 -3.46602 | gap 1, overlap 1966486 GTTCTCCAGCATCAC CA-CGAGGGTGTGTCCG GTAT CGGACACACCCTCGGTG TTCTGCTGTCGCGGC TERM 771 1966486 - 1966517 + F 100 -24.6 -2.58069 | overlap 1966484 TCTCCAGCATCACCA CGAGGGTGTGTCCG GTAT CGGACACACCCTCG GTGTTCTGCTGTCGC TERM 772 1966602 - 1966577 - f 70 -2.4 -4.63486 | opp_overlap 1966594 1966600 AGGGTTCCAAGAAAA CCCGCGCCGT TTTCCC AGGACGCTGG CAGCCGCCGTTTCTA MSMEG_1887 1966654 - 1967082 + | hypothetical protein MSMEG_1888 1968031 - 1967099 - | methyltransferase MSMEG_1889 1969131 - 1968124 - | putative ribosome small subunit-dependent GTPase RsgA aroA 1970459 - 1969128 - | 3-phosphoshikimate 1-carboxyvinyltransferase MSMEG_1891 1970515 - 1971303 + | hypothetical protein MSMEG_1892 1971300 - 1972799 + | transferase MSMEG_1893 1973613 - 1972807 - | UbiE/COQ5 methyltransferase MSMEG_1894 1974519 - 1973653 - | short chain dehydrogenase MSMEG_1895 1975435 - 1974521 - | HTH-type transcriptional regulator AlsR TERM 773 1975766 - 1975809 + G 85 -21.9 -2.62184 | gap 2 CGGCACCGCTGTGCC CGGCCTGCAG-CTCGA-CCGC CGCT GCGGATCGGGTCTGCAGGCCG TGCTGTACGCCGCCG MSMEG_1896 1975509 - 1976741 + | acetyl-CoA acetyltransferase pcaD 1976738 - 1977514 + | 3-oxoadipate enol-lactonase MSMEG_1898 1977511 - 1978308 + | succinyl-CoA:3-ketoacid-coenzyme A transferase 1, precursor MSMEG_1899 1978305 - 1978955 + | succinyl-CoA:3-ketoacid-coenzyme A transferase subunit B MSMEG_1900 1979517 - 1978960 - | D-alanyl-D-alanine carboxypeptidase family protein MSMEG_1901 1982224 - 1979558 - | DNA-binding HTH domain-containing protein MSMEG_1902 1983185 - 1982232 - | transcriptional regulator TERM 774 1982498 - 1982517 + g 72 -13.6 -3.14132 | opp_overlap 1982483, overlap 1982481 CCTGGGTCGCCATCT CCAGCTCG CCGC CGAGCTGG TTGATGGCGCGCACG MSMEG_1903 1985660 - 1983261 - | caib/baif family protein TERM 775 1983550 - 1983563 + g 72 -3.7 -4.57073 | overlap 1983547 TGCAGCACCGCACCG GCAGG CACC CCGGC TTTTTGCAGAAGCTC MSMEG_1904 1986859 - 1985666 - | acyl-CoA dehydrogenase MSMEG_1905 1987976 - 1986861 - | acyl-CoA dehydrogenase protein MSMEG_1906 1990903 - 1988141 - | toluate 1,2-dioxygenase electron transfer component TERM 776 1990838 - 1990802 - G 72 -13.7 -3.16564 | GCGGCAGGTGATGAA CCTGGTGACCCCGTCCT CGA AGGACAAGGCCACCGAG AAGGTTTCGTCGCCC MSMEG_1907 1991428 - 1990913 - | toluate 1,2-dioxygenase beta subunit MSMEG_1908 1992794 - 1991430 - | benzoate 1,2-dioxygenase alpha subunit MSMEG_1909 1993004 - 1993930 + | putative HTH-type transcriptional regulator YnfL MSMEG_1910 1993927 - 1995030 + | muconate cycloisomerase catA 1995064 - 1995957 + | catechol 1,2-dioxygenase MSMEG_1912 1995965 - 1996249 + | muconolactone delta-isomerase 1 ybaK 1996745 - 1996254 - | YbaK/ebsC protein MSMEG_1914 1997014 - 1997673 + | RNA polymerase sigma-70 factor, family protein MSMEG_1915 1997670 - 1997975 + | anti-sigma factor, family protein MSMEG_1916 1998062 - 1997988 - | hypothetical protein MSMEG_1917 1998180 - 1998401 + | putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit MSMEG_1918 1998476 - 1999975 + | sensor histidine kinase MSMEG_1919 2000397 - 2000143 - | transcription factor WhiB TERM 777 2000417 - 2000438 + r 100 -2.8 -5.626 | overlap 2000418 2000419 TCTAACTCCTAATCG GGCGCGCG GCAAAG CGCGCGAA TTTTTTTCTCGGCTG MSMEG_1920 2001608 - 2000646 - | diacylglycerol kinase, catalytic region MSMEG_1921 2002043 - 2001654 - | SecC motif-containing protein aroQ 2002144 - 2002581 + | 3-dehydroquinate dehydratase, type II MSMEG_1923 2002578 - 2002958 + | membrane protein MSMEG_1924 2003444 - 2002965 - | N-acetyltransferase Ats1 MSMEG_1925 2004532 - 2003441 - | isochorismate synthase DhbC MSMEG_1926 2005140 - 2004529 - | acid phosphatase MSMEG_1927 2005199 - 2005996 + | cobyrinic acid a,c-diamide synthase MSMEG_1928 2006011 - 2006712 + | regulatory protein MSMEG_1929 2007941 - 2006724 - | hypothetical protein MSMEG_1930 2009465 - 2007957 - | DEAD/DEAH box helicase MSMEG_1931 2009771 - 2010469 + | hypothetical protein MSMEG_1932 2011300 - 2010476 - | MmpS3 protein MSMEG_1933 2010381 - 2010563 + | hypothetical protein TERM 778 2011477 - 2011422 - fH 71 -13.1 -2.98823 | gap 1, opp_overlap 2011462, overlap 2011420 2011445 TCGGTCGCATAGATA TCGGCGCGATATCGGCCACG-GAACG GGGCG CGATCGCGTGGCCGTGGCCGCGCCGC GGGACGGCTTCGCTG MSMEG_1934 2011602 - 2011841 + | ATP-binding protein MSMEG_1935 2012509 - 2011850 - | TetR-family protein transcriptional regulator TERM 779 2012426 - 2012468 + g 75 -9.1 -4.17657 | gap 2, overlap 2012425 ACCCCGCCGCTCATC GCGG--GGCAGACGGTTACCG CGT CGGTTACCACCTGCCGGCCGC TTTTCGCCTCTCCTC MSMEG_1936 2012755 - 2013789 + | hypothetical protein MSMEG_1937 2013931 - 2015121 + | molybdopterin biosynthesis-like protein MoeZ MSMEG_1938 2015158 - 2016012 + | hypothetical protein TERM 780 2016057 - 2016072 + T 73 -6.1 -4.43844 | AACTTGCCGGTTTTC CTGCC ATTTCG GGCAG TTTTGTGACTGCTCG MSMEG_1939 2016386 - 2016090 - | 6-O-methylguanine DNA methyltransferase MSMEG_1940 2017149 - 2016388 - | hydrolase, alpha/beta fold family protein TERM 781 2017430 - 2017450 + G 70 -8.9 -3.84406 | opp_overlap 2017424, overlap 2017438 TGCAGCACATCCTGG CCGGTGCCG ACC CGGAATCGG TTCTTCTGCTGACCG TERM 782 2018551 - 2018514 - g 76 -13.3 -3.40403 | GCCCGTGCAGGACAA CGGCACCGACGTGCCGG TCGG CCGGCAGCCCGCTGCCG CGGCGCTGCTGACGG MSMEG_1941 2017285 - 2020422 + | helicase, UvrD/Rep family protein MSMEG_1943 2020443 - 2023706 + | ATP-dependent DNA helicase MSMEG_1942 2024412 - 2023699 - | integral membrane protein MSMEG_1944 2024932 - 2024543 - | membrane protein MSMEG_1945 2025002 - 2026096 + | ion channel membrane protein nudC 2026093 - 2027028 + | NADH pyrophosphatase MSMEG_1947 2027299 - 2027051 - | hypothetical protein MSMEG_1948 2027625 - 2027434 - | hypothetical protein MSMEG_1949 2027614 - 2027757 + | hypothetical protein MSMEG_1950 2027837 - 2028406 + | hypothetical protein TERM 783 2028824 - 2028781 - g 79 -14.6 -3.38326 | gap 1, overlap 2028771 2028810 2028822 CAGAACGTCAAGGAA GCCCGGTCGACGGCGCTGC AGCGCAA GCAG-GCCGCCGAACAGGC ACGCCAGAAGCGCAC MSMEG_1951 2028409 - 2029071 + | hypothetical protein TERM 784 2029086 - 2029124 + F 100 -21.8 -3.2963 | opp_overlap 2029093, overlap 2029087 ACCTGACGCTCGCTC AACCGAACACCGACGACC CGA GGTCGTCGGTGTTCGGCC TTGTCGGGCGGTGCT TERM 785 2029087 - 2029123 + F 100 -25.3 -2.57564 | opp_overlap 2029093, overlap 2029086 CCTGACGCTCGCTCA ACCGAACACCGACGACC CGA GGTCGTCGGTGTTCGGC CTTGTCGGGCGGTGC TERM 786 2029117 - 2029093 - f 100 -20.1 -3.17075 | opp_overlap 2029087 2029086 GCTCGCTCAACCGAA CACCGACGACC CGA GGTCGTCGGTG TTCGGCCTTGTCGGG TERM 787 2030245 - 2030235 - g 75 -4.6 -4.67011 | overlap 2030236 2030239 AAGCTGATCGAAAAA GGCA CCG CGCC GGCCGAAATCGCGGT MSMEG_1952 2029125 - 2031275 + | ATP-dependent DNA helicase TERM 788 2031649 - 2031684 + F 100 -11.8 -4.82901 | opp_overlap 2031650, overlap 2031650 TCACACCAGCCGAAA AGGCCACGGACCCG CAGTCACC CGGATCCGTGGCCA TTTTTGTCGGACCCC TERM 789 2031683 - 2031650 - f 100 -17.5 -4.16279 | gap 1, opp_overlap 2031649 2031650 CACACCAGCCGAAAA GGCCACGGACCCGCAG TCA CC-CGGATCCGTGGCC ATTTTTGTCGGACCC TERM 790 2031650 - 2031683 + F 86 -15.3 -3.49419 | opp_overlap 2031650, overlap 2031649 CACACCAGCCGAAAA GGCCACGGACCCG CAGTCACC CGGATCCGTGGCC ATTTTTGTCGGACCC MSMEG_1953 2031777 - 2032088 + | transcription factor WhiB TERM 791 2032105 - 2032147 + TF 100 -28.6 -2.70932 | opp_overlap 2032111, overlap 2032107 2032111 CGACCGCCCCGTCAA CGGAAACGGCACCGAGTGCG TTG CGCACTCGGTGCCGTGTCTG TGCTTGCCGCCCAGC TERM 792 2032107 - 2032145 + TF 100 -27.6 -2.90075 | opp_overlap 2032111, overlap 2032105 2032111 ACCGCCCCGTCAACG GAAACGGCACCGAGTGCG TTG CGCACTCGGTGCCGTGTC TGTGCTTGCCGCCCA TERM 793 2032111 - 2032141 + TF 100 -27 -3.05647 | opp_overlap 2032111, overlap 2032107 2032105 CCCCGTCAACGGAAA CGGCACCGAGTGCG TTG CGCACTCGGTGCCG TGTCTGTGCTTGCCG TERM 794 2032141 - 2032111 - Tf 100 -27 -3.75153 | opp_overlap 2032111 2032107 2032105 CCCCGTCAACGGAAA CGGCACCGAGTGCG TTG CGCACTCGGTGCCG TGTCTGTGCTTGCCG MSMEG_1954 2033509 - 2032190 - | ABC1 family protein MSMEG_1956 2033351 - 2033593 + | hypothetical protein MSMEG_1955 2034406 - 2033567 - | hypothetical protein MSMEG_1957 2035873 - 2034464 - | hypothetical protein TERM 795 2035793 - 2035811 + g 100 -16 -4.14147 | GGGGTTGCCGGAGCC GGACCCGG AGT CCGGGTCC TTCTTGTTCTTGTCT TERM 796 2036352 - 2036379 + G 70 -9.1 -3.89346 | TTTCAAGAACTCCGA GGACAGTGCCG AGTACG CCGCGCTGTCC TTTCTCAAGTACCCC MSMEG_1958 2035981 - 2037018 + | PDZ domain-containing protein MSMEG_1959 2037115 - 2040126 + | hypothetical protein TERM 797 2040187 - 2040142 - f 100 -23 -3.28712 | gap 1, opp_overlap 2040142 2040150, overlap 2040128 2040127 2040150 CTCTTCTCGCGAGAA GACACAAACCTGCC-CTTTTC CACGC GAAAAGCGGCAGGTTTGTGTC TTTTCGCCCCTCAAA TERM 798 2040142 - 2040187 + F 100 -23 -4.09685 | gap 1, opp_overlap 2040128 2040127 2040142 2040150, overlap 2040150 CTCTTCTCGCGAGAA GACACAAACCTGCC-CTTTTC CACGC GAAAAGCGGCAGGTTTGTGTC TTTTCGCCCCTCAAA TERM 799 2040150 - 2040179 + F 90 -11.6 -4.33956 | gap 1, opp_overlap 2040150 2040142, overlap 2040142 GCGAGAAGACACAAA CCTGCC-CTTTTC CACGC GAAAAGCGGCAGG TTTGTGTCTTTTCGC TERM 800 2040179 - 2040150 - f 88 -11.6 -4.24786 | gap 1, opp_overlap 2040142 2040150, overlap 2040142 GCGAGAAGACACAAA CCTGCC-CTTTTC CACGC GAAAAGCGGCAGG TTTGTGTCTTTTCGC MSMEG_1960 2040307 - 2040828 + | hypothetical protein MSMEG_1961 2040821 - 2041996 + | hypothetical protein MSMEG_1962 2041993 - 2042538 + | hypothetical protein MSMEG_1963 2042589 - 2045987 + | putative transcriptional regulatory protein MSMEG_1964 2046110 - 2047510 + | mitomycin radical oxidase TERM 801 2047670 - 2047718 + T 100 -22.6 -3.99592 | gap 1, overlap 2047675 2047677 2047680 ATCCTGTCCCCGCTA CTAGGTG-GAACGGCCCCCGGAG GAAA CTCCGGGGGCCGTTCTCATGTGG TTTGTGATCGTGGCT TERM 802 2047675 - 2047713 + T 100 -25.5 -3.07455 | gap 1, overlap 2047670 2047677 2047680 GTCCCCGCTACTAGG TG-GAACGGCCCCCGGAG GAAA CTCCGGGGGCCGTTCTCA TGTGGTTTGTGATCG TERM 803 2047677 - 2047710 + T 100 -28.3 -2.74598 | overlap 2047675 2047670 2047680 CCCCGCTACTAGGTG GAACGGCCCCCGGAG GAAA CTCCGGGGGCCGTTC TCATGTGGTTTGTGA TERM 804 2047680 - 2047707 + T 100 -24.2 -3.50929 | overlap 2047677 2047675 2047670 CGCTACTAGGTGGAA CGGCCCCCGGAG GAAA CTCCGGGGGCCG TTCTCATGTGGTTTG MSMEG_1966 2048551 - 2048141 - | hypothetical protein TERM 805 2048275 - 2048246 - G 71 -10.1 -3.73534 | gap 1 CAACGCCACCAACAA CACGTCGACGA-GA TTG TCGTCGTCGAAGTG CACGTATTCCATGCC MSMEG_1967 2048646 - 2049275 + | TetR-family protein transcriptional regulator MSMEG_1968 2050320 - 2049610 - | putative oxidoreductase MSMEG_1969 2050405 - 2050770 + | MerR-family protein transcriptional regulator MSMEG_1970 2052537 - 2050786 - | sigma factor TERM 806 2054352 - 2054323 - g 70 -15.7 -2.69964 | gap 1, overlap 2054320 TGCTGAACCAGATGA CCGACGACGAGCGC GAC GCGCACGTCG-CGG CGTACCGCGCCGGCG MSMEG_1971 2052753 - 2054381 + | propane monooxygenase hydroxylase large subunit TERM 807 2054435 - 2054385 - f 71 -11.9 -3.28712 | gap 1, opp_overlap 2054390, overlap 2054389 GTCCCGGCCTGAGAA CCGACGGTGGGCGGCACCTT CTCCTCCCCACC CCGGTGCCGCCCACCGT-GG TCATCCACTACCCGA MSMEG_1972 2054473 - 2055519 + | methane monooxygenase component C MSMEG_1974 2056647 - 2056991 + | propane monooxygenase coupling protein MSMEG_1975 2057028 - 2058071 + | amidohydrolase 2 MSMEG_1976 2058068 - 2058811 + | hypothetical protein MSMEG_1977 2058811 - 2059836 + | alcohol dehydrogenase groEL 2059864 - 2061513 + | chaperonin GroEL MSMEG_1979 2061539 - 2061880 + | antibiotic biosynthesis monooxygenase MSMEG_1980 2063062 - 2061887 - | hypothetical protein MSMEG_1981 2063547 - 2063059 - | hypothetical protein MSMEG_1982 2063768 - 2065315 + | acyl-CoA synthase MSMEG_1983 2066677 - 2065325 - | major facilitator family protein transporter MSMEG_1984 2067646 - 2066756 - | haloacetate dehalogenase H-1 MSMEG_1985 2067763 - 2068695 + | transcriptional regulator, LysR family protein MSMEG_1986 2068955 - 2070055 + | tartrate dehydrogenase MSMEG_1987 2070195 - 2070575 + | hypothetical protein MSMEG_1988 2070610 - 2071146 + | hypothetical protein MSMEG_1989 2071147 - 2072145 + | phenoxybenzoate dioxygenase beta subunit MSMEG_1990 2072174 - 2073247 + | hypothetical protein TERM 808 2073283 - 2073295 + F 74 -4.9 -4.52589 | overlap 2073281 CGCTGCCGTCCGCTC TATTC ATA GAATA TTTTCTATAGAGAAC MSMEG_1991 2073322 - 2074476 + | isovaleryl-CoA dehydrogenase MSMEG_1992 2074476 - 2075642 + | L-carnitine dehydratase/bile acid-inducible protein F MSMEG_1993 2075672 - 2076505 + | MaoC like domain-containing protein MSMEG_1994 2076502 - 2076633 + | HpcH/HpaI aldolase MSMEG_1995 2077354 - 2076671 - | transcriptional regulator MdcY family protein MSMEG_1996 2077513 - 2078376 + | N5,N10- methylenetetrahydromethanopterin reductase-related protein MSMEG_1997 2078514 - 2080274 + | N-acyl-D-glutamate amidohydrolase MSMEG_1998 2080271 - 2081164 + | hydrolase, alpha/beta fold family protein TERM 809 2081216 - 2081182 - T 84 -8.6 -4.57341 | gap 2, opp_overlap 2081187 2081208, overlap 2081185 AATTGCCGTGAAAAA CAACAGAGCCGGGGCC TTGTG GGCACCGGCTCTG--G ATTCGGATCCGTTTT TERM 810 2081215 - 2081185 - T 100 -18.3 -4.40561 | opp_overlap 2081187 2081208, overlap 2081182 TGCCGTGAAAAACAA CAGAGCCGGGGCC TTGTG GGCACCGGCTCTG GATTCGGATCCGTTT TERM 811 2081187 - 2081213 + T 77 -15.8 -2.53995 | opp_overlap 2081185 2081182, overlap 2081208 CCGTGAAAAACAACA GAGCCGGGGCCT TGT GGGCACCGGCTC TGGATTCGGATCCGT TERM 812 2081208 - 2081227 + T 93 -5.6 -5.24531 | opp_overlap 2081185 2081182, overlap 2081187 GGGCCTTGTGGGCAC CGGCTCTG GATT CGGATCCG TTTTTTGTCAGCGGT MSMEG_1999 2081378 - 2081235 - | hypothetical protein TERM 813 2081400 - 2081417 + r 85 -4.8 -5.05113 | gap 1, overlap 2081400 2081401 CACTCCTCGTCAAGC G-CCCCG GGTCG CGGGGAC TTTTGTTTGTCTGGC MSMEG_2000 2082070 - 2081621 - | hypothetical protein MSMEG_2001 2082831 - 2082169 - | sugar transporter MSMEG_2002 2082987 - 2083688 + | IS1096, tnpR protein MSMEG_2003 2085018 - 2083696 - | IS1096, tnpA protein MSMEG_2004 2085840 - 2085076 - | arabinose-proton symporter MSMEG_2005 2086792 - 2085866 - | sugar phosphate isomerase/epimerase MSMEG_2006 2087875 - 2086952 - | 2,3-dihydroxybiphenyl 1,2-dioxygenase MSMEG_2007 2088741 - 2087878 - | putative HpcE protein MSMEG_2008 2088661 - 2088927 + | hypothetical protein MSMEG_2009 2088924 - 2089604 + | regulatory protein GntR, HTH:GntR, C- MSMEG_2010 2089956 - 2089639 - | stress responsive A/B barrel domain superfamily protein MSMEG_2011 2091106 - 2090102 - | transcriptional regulator, LacI family protein hisD 2091191 - 2092510 + | histidinol dehydrogenase MSMEG_2013 2092507 - 2093262 + | oxidoreductase, short chain dehydrogenase/reductase family protein MSMEG_2014 2094348 - 2093263 - | molybdenum import ATP-binding protein ModC modB 2095157 - 2094345 - | molybdate ABC transporter, permease protein TERM 814 2095126 - 2095103 - G 78 -8.8 -4.25104 | TCGCGGGCACGAAAA TCCAGGCCGG CAGG CCGACCTCGA CCCGACCGCGGGTGC modA 2095897 - 2095154 - | molybdate ABC transporter, periplasmic molybdate-binding protein MSMEG_2017 2096298 - 2095894 - | transcriptional regulator, MerR family protein MSMEG_2019 2096408 - 2097154 + | short-chain dehydrogenase/reductase SDR MSMEG_2021 2098884 - 2100914 + | lipopolysaccharide biosynthesis acyltransferase, M MSMEG_2022 2101118 - 2102572 + | GntT protein, putative MSMEG_2023 2102587 - 2103825 + | CAIB/BAIF family protein MSMEG_2024 2103822 - 2104766 + | hydroxymethylglutaryl-CoA lyase MSMEG_2025 2104783 - 2105565 + | putative IclR family protein transcriptional regulator MSMEG_2026 2105584 - 2106414 + | short chain dehydrogenase TERM 815 2106416 - 2106457 + T 100 -23.7 -3.05596 | opp_overlap 2106420 2106422 2106424, overlap 2106420 ACTTCGATTCCTGAC ATGACAGAGCGGCCCCGGG ATCT CCCGGGGCCGCCCTGTCGA TTCACTCGACCGATC TERM 816 2106420 - 2106453 + T 100 -25.3 -2.54896 | opp_overlap 2106420 2106422 2106424, overlap 2106416 CGATTCCTGACATGA CAGAGCGGCCCCGGG ATCT CCCGGGGCCGCCCTG TCGATTCACTCGACC TERM 817 2106453 - 2106420 - T 100 -27.5 -2.62616 | opp_overlap 2106420 2106416, overlap 2106422 2106424 CGATTCCTGACATGA CAGAGCGGCCCCGGG ATCT CCCGGGGCCGCCCTG TCGATTCACTCGACC TERM 818 2106451 - 2106422 - T 100 -24.3 -2.8547 | opp_overlap 2106420 2106416, overlap 2106420 2106424 ATTCCTGACATGACA GAGCGGCCCCGGG ATCT CCCGGGGCCGCCC TGTCGATTCACTCGA TERM 819 2106449 - 2106424 - T 100 -23.3 -2.97747 | opp_overlap 2106420 2106416, overlap 2106422 2106420 TCCTGACATGACAGA GCGGCCCCGGG ATCT CCCGGGGCCGC CCTGTCGATTCACTC MSMEG_2027 2106894 - 2106472 - | hypothetical protein MSMEG_2028 2108135 - 2106948 - | chloramphenicol resistance protein MSMEG_2029 2108896 - 2108135 - | 3-ketoacyl-ACP/CoA redutase MSMEG_2030 2108966 - 2109559 + | transcriptional regulator, TetR family protein MSMEG_2031 2109743 - 2109561 - | hypothetical protein MSMEG_2032 2109768 - 2110526 + | hypothetical protein MSMEG_2033 2111509 - 2110538 - | oxidoreductase, zinc-binding dehydrogenase family protein TERM 820 2111414 - 2111393 - G 73 -12.3 -3.53224 | gap 1 CAGCGCGTCGGGAAA CG-CCACGCC TGC GGCGTGGACG TCGATCAGGACGGCG MSMEG_2034 2111627 - 2112715 + | aryl-alcohol dehydrogenase TERM 821 2113322 - 2113369 + G 70 -12.8 -3.2614 | opp_overlap 2113314, overlap 2113360 GCCAACAGGCGCTTC GTCGCCCATCTCGCGG-TCGGC CGCGAC GCCGATCCGTG-GGTGGCCGAC TTCGTCTACCGCCTG MSMEG_2036 2112758 - 2113684 + | hydrolase, alpha/beta fold family protein MSMEG_2035 2115026 - 2113659 - | amine oxidase [flavin-containing] B TERM 822 2114305 - 2114341 + g 77 -17.3 -2.52795 | overlap 2114294 2114319 2114328 ATGTCGCCACCGGAG TGGCGTTCGATGCGCTG CAC CGGCGCGTCGAGCGCGA TGCGTTGGCCCAGTT MSMEG_2037 2115046 - 2116035 + | hypothetical protein MSMEG_2038 2116080 - 2117639 + | monooxygenase, flavin-binding family protein MSMEG_2039 2118420 - 2117665 - | putative transcriptional regulator TERM 823 2117947 - 2117908 - G 87 -17.8 -3.31263 | gap 1, opp_overlap 2117912, overlap 2117894 ACGGGATTCGGACAA CCCGGCCGTGGCGGCCAGC TCG GC-GGCCGCCACCACCGTG GCCGGATCGTCGCGG MSMEG_2040 2118476 - 2118826 + | hypothetical protein MSMEG_2042 2121094 - 2119958 - | phosphotransferase enzyme family protein MSMEG_2043 2121141 - 2121749 + | transcriptional regulator, TetR family protein MSMEG_2044 2121822 - 2123135 + | integral membrane transport protein MSMEG_2045 2123135 - 2124499 + | monoxygenase MSMEG_2046 2124514 - 2125188 + | GlcNAc-PI de-N-acetylase family protein MSMEG_2048 2125208 - 2126242 + | alcohol dehydrogenase MSMEG_2047 2127006 - 2126239 - | enoyl-CoA hydratase TERM 824 2126600 - 2126542 - G 79 -14.5 -3.35798 | opp_overlap 2126556 ACCGGTCATCGACAA CCGGC-GCGCCATTGCGGCGCCGACCACC TGC GGCAGTCG-CGCCGTCATTCCGCCGCCGG GCAGAATCCCCACGC MSMEG_2049 2127094 - 2127675 + | putative transcriptional regulator, TetR family protein TERM 825 2127666 - 2127686 + T 79 -6 -4.63218 | overlap 2127668 CCGGAAGTCGACCGG GGGCGGGT AGACG GCCCGCAC TTTTCTTCCGCGAGC nuoN 2129329 - 2127764 - | NADH dehydrogenase subunit N nuoM 2130920 - 2129331 - | NADH dehydrogenase subunit M nuoL 2132803 - 2130914 - | NADH dehydrogenase subunit L TERM 826 2132292 - 2132309 + g 70 -12.7 -3.28712 | opp_overlap 2132280 AAGGCCTTCTTGGCC GCCGTCG CGGC CGACGGC TTGTGCGACCAGAAC nuoK 2133110 - 2132811 - | NADH dehydrogenase subunit K MSMEG_2054 2133874 - 2133116 - | NADH dehydrogenase subunit J nuoI 2134413 - 2133871 - | NADH dehydrogenase subunit I TERM 827 2134336 - 2134351 + g 75 -5.4 -4.59773 | gap 1 GGGTTTCTCCGGATA GCCC-TC GGT GATGGGC TTTTTGAACATCGAG nuoH 2135632 - 2134406 - | NADH dehydrogenase subunit H nuoG 2138013 - 2135629 - | NADH dehydrogenase subunit G TERM 828 2135970 - 2135931 - G 70 -12.1 -3.29511 | gap 2 GCCAGCTCGCGAGAA CCGCCTGCC-CG-GACCCG GCTT CGGGTCTCGCGGTGGGCGG CGCCGTGGGCGCGGG TERM 829 2136023 - 2136068 + g 70 -15.4 -2.78463 | gap 1 CCCAGCTGCGCGAGT TCGGCGTCGGCCGC-CTCGGC AGTGG GCAGGGCGAGGTCGACGCCGA TCTCGTCGGCCAGAT nuoF 2139433 - 2138102 - | NADH-quinone oxidoreductase, F subunit MSMEG_2059 2140167 - 2139430 - | NADH dehydrogenase subunit E TERM 830 2140100 - 2140125 + g 86 -18.3 -3.14344 | TCGTCGGGATACGTC GCGGGTCCGCT GATC GGCGGACCCGC TTCGTCCGGGCGCTG nuoD 2141556 - 2140228 - | NADH dehydrogenase subunit D MSMEG_2061 2142272 - 2141556 - | NADH dehydrogenase subunit C nuoB 2142823 - 2142269 - | NADH dehydrogenase subunit B nuoA 2143182 - 2142814 - | NADH dehydrogenase subunit A TERM 831 2143250 - 2143260 + r 74 -5.4 -4.4773 | overlap 2143243 GCGAGCTTTGCGGCC TGTG CCA CACA TTTTGGTTAGTATCG MSMEG_2064 2143764 - 2143366 - | two-component system response regulator MSMEG_2065 2144346 - 2143828 - | YceI like family protein MSMEG_2066 2144779 - 2144378 - | hypothetical protein TERM 832 2144717 - 2144689 - G 86 -21.7 -2.78384 | CGTCCTCGGACCACA GGGCGGCGACCGC GGC GCGGTCGCCGCGC TCGATCGCGCCGAAC MSMEG_2067 2144836 - 2145471 + | methyltransferase type 12 MSMEG_2068 2145835 - 2145479 - | hypothetical protein MSMEG_2069 2146821 - 2145832 - | phosphotransferase enzyme family protein MSMEG_2070 2148062 - 2146818 - | acyl-CoA dehydrogenase family protein MSMEG_2071 2148684 - 2148073 - | transcriptional regulator, TetR family protein MSMEG_2072 2149593 - 2148691 - | 3-hydroxy-3-methylglutaryl-CoA lyase MSMEG_2073 2150795 - 2149593 - | CAIB/BAIF family protein MSMEG_2074 2152021 - 2150792 - | hypothetical protein hmgA 2153125 - 2152022 - | homogentisate 1,2-dioxygenase MSMEG_2076 2153850 - 2153254 - | hypothetical protein MSMEG_2077 2155042 - 2153861 - | acyl-CoA dehydrogenase domain-containing protein TERM 833 2155033 - 2155062 + g 81 -3.5 -4.87807 | overlap 2155034 2155058 2155060 CGGCGCCCGATACGG ATATGGTCACGGC CGCG GACGTTACCATAC TTTTTAGTATGTTCA MSMEG_2078 2155501 - 2156478 + | antigen 85-C TERM 834 2156491 - 2156529 + T 100 -29.2 -2.87463 | opp_overlap 2156491 2156496, overlap 2156496 TAGACCCGTATCACA CGAAATCGCCCAGAACAC CTT GTGTTCTGGGCGATTTCG TATCTGCAGGAGGTT TERM 835 2156529 - 2156491 - T 100 -29.2 -2.79501 | opp_overlap 2156491 2156496, overlap 2156496 TAGACCCGTATCACA CGAAATCGCCCAGAACAC CTT GTGTTCTGGGCGATTTCG TATCTGCAGGAGGTT TERM 836 2156524 - 2156496 - T 100 -21.9 -3.86202 | opp_overlap 2156496 2156491, overlap 2156491 CCGTATCACACGAAA TCGCCCAGAACAC CTT GTGTTCTGGGCGA TTTCGTATCTGCAGG TERM 837 2156496 - 2156524 + T 100 -21.9 -3.88498 | opp_overlap 2156491 2156496, overlap 2156491 CCGTATCACACGAAA TCGCCCAGAACAC CTT GTGTTCTGGGCGA TTTCGTATCTGCAGG MSMEG_2079 2157543 - 2156545 - | alcohol dehydrogenase TERM 838 2157589 - 2157606 + r 75 -7.7 -4.24948 | opp_overlap 2157589 2157572 2157579 2157590, overlap 2157582 2157590 CAAAACTGCTCAAAA TTGCACG GTTT CGTGCAG TTTTGCGTGTGCTCG MSMEG_2080 2158853 - 2157633 - | putative acyl-CoA dehydrogenase MSMEG_2081 2160217 - 2158889 - | putative acyl-CoA dehydrogenase MSMEG_2082 2160227 - 2160346 + | hypothetical protein MSMEG_2083 2161186 - 2160404 - | inositol monophosphatase MSMEG_2084 2161210 - 2161590 + | hypothetical protein TERM 839 2162201 - 2162163 - f 74 -11.7 -3.65046 | gap 1, opp_overlap 2162184 CGGTGAGGTGAAGAA CCGGAA-CACGATGCGCC GCTT GGCGCCTCGCGGTTCCCG CTCGGCGTAACCGCG TERM 840 2163446 - 2163417 - g 70 -14.9 -2.70932 | CTGGCCGCCGAAGCA GGCGGCCCCGACG AGGT CGCCGAGGCCGAC GCCGAGCTCGCCAAG prfB 2163153 - 2164259 + | peptide chain release factor 2 TERM 841 2164603 - 2164631 + G 74 -12.3 -3.64703 | overlap 2164574 GCGTCGCTGGTCGCA CCGGCCGCCGTGC TCG GTGCGGCGCTCGG TTTCGGTGCACAACG MSMEG_2087 2164249 - 2165229 + | transporter, small conductance mechanosensitive ion channel (MscS) family protein MSMEG_2088 2165307 - 2165747 + | hypothetical protein ftsE 2165793 - 2166482 + | cell division ATP-binding protein FtsE MSMEG_2090 2166483 - 2167379 + | putative cell division protein FtsX TERM 842 2167434 - 2167422 - g 72 -9.1 -3.99374 | CTCCAGCAACAACAA GGTGG TCG CCACC AACCGCAAGGCGCGA smpB 2167390 - 2167875 + | SsrA-binding protein MSMEG_2092 2168040 - 2169143 + | D-aminopeptidase TERM 843 2169629 - 2169653 + T 100 -20.1 -5.14563 | opp_overlap 2169632 GCAGCTCCACCAGTA GAAGGGCCGCA GGA TGCGGCCCTTC TTTTTTGGTGCGGGC TERM 844 2169650 - 2169632 - T 90 -16 -3.44051 | opp_overlap 2169629 GCTCCACCAGTAGAA GGGCCGCA GGA TGCGGCCC TTCTTTTTTGGTGCG MSMEG_2094 2171087 - 2169678 - | 56kDa selenium binding protein MSMEG_2095 2171219 - 2172142 + | serine esterase, cutinase family protein MSMEG_2096 2173018 - 2172275 - | integral membrane protein MSMEG_2097 2174138 - 2173038 - | Acyl-coenzyme A:6-aminopenicillanic acid acyl-transferase MSMEG_2098 2175013 - 2174138 - | fumarylacetoacetate hydrolase family protein MSMEG_2099 2176023 - 2175058 - | ABC transporter, substrate binding protein [nitrate/sulfonate], putative MSMEG_2100 2177433 - 2176102 - | peptidase family protein M20/M25/M40 TERM 845 2177025 - 2177013 - G 73 -10.5 -3.90112 | CGCCGGCGAAGGAAA CGCCG GCG CGGCG CATCGCATCCATCAT TERM 846 2177392 - 2177412 + g 73 -10.5 -3.87815 | opp_overlap 2177388 2177385 GTCGACAATCAGCGA TTCGTCGAT CAG ATCGGCGAA TTTCTCGAAATCGAA MSMEG_2102 2179069 - 2178248 - | nitrate transport ATP-binding protein NrtD MSMEG_2103 2180020 - 2179121 - | 5,10-methylenetetrahydromethanopterin reductase MSMEG_2104 2181750 - 2180401 - | GntR-family protein transcriptional regulator TERM 847 2180497 - 2180508 + g 72 -3.6 -4.56597 | CAGTCCCACCGTGAT TCGC ACAT GCGG TTTTTCACCGGGACC TERM 848 2181526 - 2181539 + g 71 -9.5 -3.68351 | CATGATGATCGTGCC CCGCC GCCC GGCGG TTTGAATGGTGCCGG MSMEG_2105 2183003 - 2182038 - | ATP dependent DNA ligase TERM 849 2183375 - 2183326 - g 85 -19.1 -3.05384 | overlap 2183299 GCCGCGGCGATCCAA CCGCCGGCCAACCAGGGCCCCGC GCCC GCGCTGCCCGGGCTCACCGGCGG TCCGCCGCGCGGCCA MSMEG_2107 2183185 - 2184645 + | hypothetical protein MSMEG_2106 2185249 - 2184617 - | putative transcriptional regulator TERM 850 2185488 - 2185524 + G 70 -9.3 -3.87815 | opp_overlap 2185485, overlap 2185493 CCTGTGGAACGAGGC CAACCCGGCGTTCTCCA GCA TGGCCAACGCCGTGTCG TTTCTGGCCATCGCG TERM 851 2185827 - 2185875 + G 91 -8.9 -4.8543 | gap 2, opp_overlap 2185838, overlap 2185830 CAAGCTCATGCTCGA CCACGACGACACGC--TCTTCGC GCCCG GCGACGACCGCGTGGCGTCGTTG TTTTTGTGGCACTTC TERM 852 2185830 - 2185872 + G 82 -9.2 -4.52873 | gap 2, opp_overlap 2185838, overlap 2185827 GCTCATGCTCGACCA CGACGACACGC--TCTTCGC GCCCG GCGACGACCGCGTGGCGTCG TTGTTTTTGTGGCAC MSMEG_2108 2185414 - 2186352 + | hypothetical protein MSMEG_2109 2186345 - 2187502 + | hypothetical protein MSMEG_2110 2187612 - 2188592 + | hypothetical protein MSMEG_2111 2188645 - 2189190 + | chorismate mutase TERM 853 2189204 - 2189218 + F 72 -8.6 -4.03234 | GAGGCTTTACATCCC CGTCAA GAA TTGACG TTTCTGTAGGACGCC MSMEG_2112 2189268 - 2189852 + | secreted protein TERM 854 2190106 - 2190122 + GT 75 -13.7 -3.01924 | opp_overlap 2190099 TCCGAATACGGGTGA GCCCACC GAC GGTGGGC TGTTCGCCGACGATG MSMEG_2113 2190532 - 2190275 - | hypothetical protein MSMEG_2115 2189849 - 2190382 + | hypothetical protein MSMEG_2114 2190525 - 2190361 - | glucose-6-phosphate isomerase, putative TERM 855 2190433 - 2190391 - G 100 -33.6 -3.32963 | AGTCTGACCGGACAA CGACTCCGCCGGACCGCGAC TCA GTCGCGGTTCGGCGGAGTCG TAGATCACCAGGAAC MSMEG_2116 2192436 - 2190853 - | PTS system, glucose-specific IIBC component TERM 856 2192301 - 2192348 + g 72 -8.9 -4.07687 | opp_overlap 2192288 CAGGCTGGCCTATGC GCAGCAGGATGCCCGCCGCGG GCAGCA CCGCGATGGGCAGCATGAGGC TTTTGCCGAGGCGCT MSMEG_2117 2192581 - 2193051 + | beta-glucoside-specific EII permease nagB 2193073 - 2193858 + | glucosamine-6-phosphate deaminase nagA 2193860 - 2195017 + | N-acetylglucosamine-6-phosphate deacetylase MSMEG_2120 2195157 - 2197775 + | TPR repeat-containing protein MSMEG_2121 2200202 - 2197776 - | multiphosphoryl transfer protein (MTP) TERM 857 2198606 - 2198571 - G 76 -13.4 -3.39449 | overlap 2198587 GCCGAGGAACAGGAA CTCGGTGCGGATCA GACCCGCG TGATCGGCACCGAG TGCGGCTGCCGCGCG MSMEG_2122 2200831 - 2200199 - | dihydroxyacetone kinase, L subunit dhaK 2201831 - 2200833 - | dihydroxyacetone kinase, DhaK subunit TERM 858 2201786 - 2201823 + g 79 -2.6 -4.82154 | opp_overlap 2201772, overlap 2201788 2201795 2201799 ATGCCATGCCGCGCA GGGCATCGGCGATCAC ATCGGC GGGATCGTTGATGAGC TTTTTCATGTGCCTT MSMEG_2124 2202608 - 2201841 - | glycerol uptake facilitator, MIP channel MSMEG_2125 2202762 - 2203508 + | glycerol operon regulatory protein TERM 859 2203552 - 2203540 - gf 81 -9.1 -4.29738 | opp_overlap 2203509 CGAGAGCGACGAAAA CGTCG TCA CGACG CACTCGCAGCGACAT MSMEG_2126 2203331 - 2203729 + | hypothetical protein MSMEG_2127 2203799 - 2204158 + | hypothetical protein MSMEG_2128 2204236 - 2204883 + | malonyl CoA decarboxylase TERM 860 2205124 - 2205069 - g 78 -13.4 -3.65425 | gap 1, overlap 2205072 TCGACACACCGCAAA TCAG-CAGCAGTCAGCGCACCTTCGCG GCC CACGAACGTGCGTCAACTGCTGACCAA ACACGGCATGTCGAC TERM 861 2205120 - 2205072 - g 72 -15.3 -2.93853 | overlap 2205069 ACACACCGCAAATCA GCAGCAGTCAGCGCACCTTCGCG GCC CACGAACGTGCGTCAACTGCTGA CCAAACACGGCATGT MSMEG_2129 2205039 - 2205167 + | hypothetical protein MSMEG_2130 2206385 - 2205201 - | putative acyl-CoA dehydrogenase MSMEG_2131 2207962 - 2206382 - | acyl-CoA synthetase MSMEG_2132 2208228 - 2207959 - | acyl carrier protein MSMEG_2133 2209358 - 2208288 - | hypothetical protein crcB 2209720 - 2209355 - | CrcB protein MSMEG_2135 2210115 - 2209717 - | putative CrcB protein pgm 2210186 - 2211820 + | phosphoglucomutase MSMEG_2137 2211817 - 2213085 + | permease of the major facilitator superfamily protein TERM 862 2213226 - 2213252 + T 100 -19.4 -3.90082 | opp_overlap 2213226 TCCACTCCTCAGATA CCCGCTCCGGCC ATT GGTCGGGGCGGG TTTCGTCGTTTCCTC TERM 863 2213252 - 2213226 - T 77 -15 -2.87931 | opp_overlap 2213226 TCCACTCCTCAGATA CCCGCTCCGGCC ATT GGTCGGGGCGGG TTTCGTCGTTTCCTC MSMEG_2139 2213484 - 2213383 - | hypothetical protein MSMEG_2140 2214726 - 2213518 - | Fic protein family protein TERM 864 2214608 - 2214564 - G 72 -13.5 -3.14683 | opp_overlap 2214565 AGACCGCCGCAGGAA GCGAGACCGCGAGTTCGGC GATGGAA GCCGGAATCGCGGCCTCGT ACTCTCCGGCTTGTC TERM 865 2214565 - 2214607 + g 77 -17 -2.6381 | opp_overlap 2214564 GACCGCCGCAGGAAG CGAGACCGCGAGTTCGGC GATGGAA GCCGGAATCGCGGCCTCG TACTCTCCGGCTTGT TERM 866 2214768 - 2214735 - H 89 -18.5 -3.16177 | opp_overlap 2214739 2214742 ATGCCACACACCGAA GATAGCATCACTTAA TGCT TTAAGTGATGCTATC GAGCGCCCCGAGCAT MSMEG_2141 2214785 - 2215036 + | gp35 protein MSMEG_2142 2215051 - 2215749 + | gp36 protein MSMEG_2143 2216200 - 2215760 - | hypothetical protein MSMEG_2144 2216793 - 2216197 - | hypothetical protein TERM 867 2216990 - 2216978 - H 71 -10.5 -3.63895 | GGGAATCAGCCGAAA CCCCG GAT CGGGG GGATACAGGGCAAAC MSMEG_2145 2217015 - 2217425 + | hypothetical protein MSMEG_2146 2217440 - 2221084 + | gp15 protein TERM 868 2222492 - 2222515 + F 79 -6 -4.65933 | gap 1, overlap 2222496 TGCAGTAGTTCGTTG CTAAGCGCTGC TCA GAAGCGCT-AG TTTGTTTTGCCGGTG TERM 869 2223444 - 2223463 + G 76 -7 -4.26953 | overlap 2223445 CTGCACCTGACAGGT GCCGGCGG CGCG CCGCTGGG TTTGTTGGATTCGTT MSMEG_2148 2222742 - 2224376 + | HNH endonuclease domain-containing protein MSMEG_2149 2224483 - 2224938 + | hypothetical protein MSMEG_2150 2225963 - 2225109 - | putative transposition helper protein TERM 870 2225370 - 2225352 - G 83 -12.4 -3.97689 | overlap 2225349 2225353 GACAACCTGAAACAA CGCCGAGG CGG CCTCGGCA GGCAGCGGCAAATAG MSMEG_2151 2227321 - 2225960 - | transposase IstA protein, putative TERM 871 2226487 - 2226459 - G 83 -20.4 -2.78384 | GTCTTGGCCACCACA GCCACCGCTGAC CGCCC GTCAGCGGTGGC CCGCATCCGGGTGCC TERM 872 2227387 - 2227329 - R 79 -14.5 -2.99273 | gap 1, opp_overlap 2227378 GTGAGCATGAGAAAG CGGGCCTCCTTCGACGGGAGCTGTTGGC GTCA GACACCAGCAGC-ATCGAGGGAGGCCCG CCCTTCTCGGCGGAG TERM 873 2228087 - 2228120 + r 88 -17.5 -3.05384 | opp_overlap 2228091 2228093, overlap 2228093 CTTGGCTCCACTTCA CGAAGACCCGCGGCG GGGA TGCCGCGGGTTTTTG TTGCGTACGGGCGGC TERM 874 2228114 - 2228093 - R 76 -14.4 -3.14602 | opp_overlap 2228087 2228093, overlap 2228091 TCCACTTCACGAAGA CCCGCGGC GGGGAT GCCGCGGG TTTTTGTTGCGTACG TERM 875 2228093 - 2228114 + r 100 -15.1 -5.10461 | opp_overlap 2228093 2228091, overlap 2228087 TCCACTTCACGAAGA CCCGCGGCG GGGA TGCCGCGGG TTTTTGTTGCGTACG MSMEG_2153 2228763 - 2228170 - | transcriptional regulator, TetR family protein MSMEG_2154 2228863 - 2229687 + | hypothetical protein MSMEG_2155 2229760 - 2230743 + | trans-2-enoyl-CoA reductase MSMEG_2156 2230794 - 2231729 + | hypothetical protein MSMEG_2157 2231876 - 2232784 + | hypothetical protein MSMEG_2158 2233865 - 2233443 - | hypothetical protein MSMEG_2159 2232790 - 2233644 + | hypothetical protein MSMEG_2160 2233641 - 2233796 + | hypothetical protein TERM 876 2236400 - 2236412 + FH 73 -6.2 -4.3739 | GCACGGTGCTGCTGA CCGG GGCGA CCGG TTTTCTCGGGCGCTA TERM 877 2237461 - 2237427 - fH 88 -15.8 -3.31792 | opp_overlap 2237428, overlap 2237428 CCAGCACCCCGAGAA GCCGATCCGTGGGT CGCAGGC ACCCACGGATCGGT TTCGGGCAGCGGTGC TERM 878 2237428 - 2237460 + FH 100 -19.3 -3.53224 | opp_overlap 2237428 2237427 CAGCACCCCGAGAAG CCGATCCGTGGGT CGCAGGC ACCCACGGATCGG TTTCGGGCAGCGGTG TERM 879 2237460 - 2237428 - fH 89 -19.3 -2.58861 | opp_overlap 2237428, overlap 2237427 CAGCACCCCGAGAAG CCGATCCGTGGGT CGCAGGC ACCCACGGATCGG TTTCGGGCAGCGGTG TERM 880 2237701 - 2237673 - fH 74 -11.7 -3.59979 | opp_overlap 2237681, overlap 2237674 2237681 TCCGGCGATCCGAAA GCGGTAAAGTGGC TAA GCCGCTTTACCGA AGGAGGATTGCGGAT TERM 881 2237700 - 2237674 - fH 75 -15.2 -2.75844 | opp_overlap 2237681, overlap 2237673 2237681 CCGGCGATCCGAAAG CGGTAAAGTGGC TAA GCCGCTTTACCG AAGGAGGATTGCGGA MSMEG_2162 2237715 - 2238554 + | MmcJ protein MSMEG_2163 2238574 - 2240016 + | aldehyde dehydrogenase MSMEG_2164 2240142 - 2240876 + | transcriptional regulator, putative TERM 882 2240939 - 2240916 - f 87 -15.2 -3.57144 | opp_overlap 2240916, overlap 2240897 TCGCGCATCTCGAAA GCCGGTCCCC ATCC GGGGGCCGGC TTTTCCATGTCACTG TERM 883 2240916 - 2240939 + F 100 -17.4 -4.24204 | opp_overlap 2240897 2240916 TCGCGCATCTCGAAA GCCGGTCCCC ATCC GGGGGCCGGC TTTTCCATGTCACTG MSMEG_2165 2241113 - 2241976 + | transketolase, N- subunit TERM 884 2242549 - 2242590 + G 76 -14.4 -3.53224 | overlap 2242552 AACGTGGTGGTGGTC GACGGTGAGGCCGACGAG CGCGAA CCCGTCGACCTCACCATC TTTGCGACGGGCATG MSMEG_2166 2241973 - 2243007 + | transketoloase, C half TERM 885 2243513 - 2243485 - g 83 -15.3 -3.63627 | overlap 2243494 GGTGCAGACCGGAAA CGCGAAGAAGGTC GCC GACCTCCTGCGCG AGCACGGCCTGGCCA MSMEG_2167 2243141 - 2244442 + | aminopeptidase, putative MSMEG_2168 2244465 - 2244662 + | hypothetical protein TERM 886 2244816 - 2244854 + GT 93 -17.5 -3.31792 | gap 1, overlap 2244817 2244819 ATCTAGGTTGCGAAG TCGCCGAGTCAGTGGCCC GGAT GGGCCACTG-CTCGGTGC TTCTCACCATGCTCG TERM 887 2244817 - 2244853 + GT 100 -21 -2.58861 | gap 1, overlap 2244816 2244819 TCTAGGTTGCGAAGT CGCCGAGTCAGTGGCCC GGAT GGGCCACTG-CTCGGTG CTTCTCACCATGCTC TERM 888 2244819 - 2244851 + GT 100 -20 -2.83271 | gap 1, overlap 2244817 2244816 TAGGTTGCGAAGTCG CCGAGTCAGTGGCCC GGAT GGGCCACTG-CTCGG TGCTTCTCACCATGC accD 2247044 - 2245536 - | acetyl-CoA carboxylase, carboxyl transferase, beta subunit MSMEG_2170 2244650 - 2245630 + | 3-hydroxyisobutyrate dehydrogenase family protein TERM 889 2246173 - 2246209 + gT 81 -13.5 -3.57144 | ACACACGGCAGATGC CCGAACCGGGCCAGCGC GAG GAGCAGGCCGGGATCGG TTTCACCCTGCCCGG MSMEG_2171 2248261 - 2247041 - | L-carnitine dehydratase/bile acid-inducible protein F TERM 890 2248456 - 2248420 - R 86 -18.2 -2.62184 | gap 2, opp_overlap 2248410 2248426, overlap 2248424 TCGCGCGTGATACGA CGAAT-G-CCCGAGGCGG AGT CCGCCTCGGGTCGATTCG CCTCATGGGGTGGTT TERM 891 2248450 - 2248424 - R 78 -13.6 -3.24747 | opp_overlap 2248410 2248426, overlap 2248420 GCGTGATACGACGAA TGCCCGAGGCGG AGT CCGCCTCGGGTC GATTCGCCTCATGGG TERM 892 2248426 - 2248448 + r 91 -20.6 -2.54193 | opp_overlap 2248424 2248420, overlap 2248410 GTGATACGACGAATG CCCGAGGCGG AGT CCGCCTCGGG TCGATTCGCCTCATG MSMEG_2172 2249870 - 2248470 - | dicarboxylate-carrier protein TERM 893 2249207 - 2249153 - G 81 -9.8 -4.36914 | gap 1 CGTGGCCGGAGAAAA CCGGGCTGCCCC-CGCCCGACGGTG CGGAGC CACCACCGCCCGTGGAGCCTCCCGG GCCTCCGGTGCCGTC TERM 894 2249622 - 2249652 + g 74 -11.1 -3.81447 | gap 1, overlap 2249619 TCTGACCAGGCGTAA C-GCGCCGCGGACC ATGA GGTCCACGGTGCCG TTGTTCTGCGCTATG TERM 895 2249725 - 2249707 - G 81 -10.2 -4.2461 | opp_overlap 2249704 2249707, overlap 2249718 2249719 AGCGTCAGGAACAAA TCGCTGGG AAA CCCGGCGA TGATGTCGTCGGTAT MSMEG_2173 2250029 - 2250721 + | GntR-family protein transcriptional regulator TERM 896 2252244 - 2252226 - g 74 -13.1 -3.61398 | overlap 2252201 GTTGGGGCGCAACAA GGCCGCC GACGA GGCGGCC GAGCGCGAGCGCCGC TERM 897 2252419 - 2252397 - g 82 -14.8 -3.45737 | CAAGGAGCAGGACAA CCGCGAGCTC AGT GAGCGCGCGG CCGCCGATCGCGAGT MSMEG_2174 2250877 - 2253087 + | superfamily protein I DNA or RNA helicase MSMEG_2176 2253121 - 2253447 + | hypothetical protein MSMEG_2175 2254820 - 2253444 - | nitrilotriacetate monooxygenase component A MSMEG_2177 2256019 - 2254841 - | fmnh2-utilizing oxygenase TERM 898 2256161 - 2256199 + r 80 -14.6 -3.10641 | TGCCAACTCTGTTCG CCGCTGCCCGC-AGGCGC TGGTT GCGCCTAGCGGGCC-CGG TTGCGTGATGCCTTG MSMEG_2178 2256384 - 2256187 - | integral membrane protein MSMEG_2179 2256454 - 2257758 + | transcriptional regulatory protein MSMEG_2180 2258323 - 2257799 - | RemK protein TERM 899 2258375 - 2258359 - H 85 -7.9 -4.63218 | TGCCGTTGAACAAAA CGGTACG CCG CGTCCCG CGAATAGGTCAACGG TERM 900 2258826 - 2258870 + G 72 -13.5 -3.15544 | overlap 2258820 CCGGTGGCCCAGCGC GTGGCCGCGGAGTTCGGTGTC GAC GACGCCGAACTGCGCGTCGAG TTGGTGACCGTGCAC MSMEG_2182 2258412 - 2259011 + | transcriptional regulator MSMEG_2181 2259802 - 2258987 - | cell filamentation protein MSMEG_2183 2260779 - 2259796 - | hypothetical protein TERM 901 2260042 - 2260011 - G 74 -14.4 -3.29829 | overlap 2260012 2260036 GACACCGCGTCAGAA CGGCCGCGTCCTCG TCGT CGAGAAAGCGGCCA CCGGCCGCGTCGTGG TERM 902 2260050 - 2260036 - G 81 -12.8 -3.85698 | overlap 2260012 2260011 CTCGTCGTCGAGAAA GCGGCC ACC GGCCGC GTCGTGGATCCGGTC TERM 903 2262415 - 2262453 + G 72 -15.2 -2.90075 | opp_overlap 2262395 TCCTGCAGTGGGCGG GCCCGCTGAGCATCGCCG CCA CGGTGCTGCTCGGTGCGC TGTGCTTCCCGCGCG MSMEG_2184 2260965 - 2262506 + | amino acid permease MSMEG_2185 2262515 - 2263351 + | hypothetical protein TERM 904 2263742 - 2263696 - g 70 -8.7 -3.8766 | GGACACCACACCAAA CACCAGCACGCGTGCGTCGA-GA ACT TCATCGGCGAAGGCGCGC-GGTG GGGCCTGACGAAGGC MSMEG_2186 2263348 - 2263971 + | hypothetical protein MSMEG_2187 2263968 - 2265989 + | urea amidolyase TERM 905 2267173 - 2267217 + GT 74 -10.6 -3.78022 | gap 1, overlap 2267143 2267174 CGGCATCACGCTGCT GGCGCCG-GCGTTCGGTGATG CCGT CGTCGCCGATCTCGCGGCGCG TTTCCTCGCTGTGCC TERM 906 2267174 - 2267216 + GT 73 -14.1 -2.86492 | gap 1, overlap 2267143 2267173 GGCATCACGCTGCTG GCGCCG-GCGTTCGGTGATG CCGT CGTCGCCGATCTCGCGGCGC GTTTCCTCGCTGTGC MSMEG_2188 2268578 - 2267604 - | integral membrane protein atzF 2265986 - 2267656 + | allophanate hydrolase MSMEG_2190 2269790 - 2268648 - | acyl-CoA dehydrogenase domain-containing protein MSMEG_2191 2271034 - 2269802 - | acyl-CoA dehydrogenase family protein MSMEG_2192 2271168 - 2271569 + | hypothetical protein MSMEG_2194 2271642 - 2272415 + | MerR-family protein transcriptional regulator MSMEG_2193 2273065 - 2272412 - | transcriptional regulator, TetR family protein MSMEG_2195 2273773 - 2273072 - | transcriptional regulator, TetR family protein MSMEG_2197 2274343 - 2275170 + | hypothetical protein MSMEG_2196 2276997 - 2275150 - | sensory box/response regulator MSMEG_2198 2279198 - 2277027 - | hypothetical protein MSMEG_2199 2279959 - 2279195 - | hypothetical protein TERM 907 2280475 - 2280495 + G 71 -10.4 -3.75506 | AAGGCGAACGCTCTA CCGGCTCA GGACG TGGGCCGG TTGTTGCTGCGTTGT purU 2280439 - 2281332 + | formyltetrahydrofolate deformylase MSMEG_2201 2281354 - 2281806 + | ZbpA protein TERM 908 2281813 - 2281861 + F 90 -15.9 -3.53343 | opp_overlap 2281821, overlap 2281815 2281816 ATCGGCTGACGTTCC GATACAAATCCGGTGGCCACGGC AAT GCCGCGGCCGCCGGATTCGCGTG TTTCCGGCAAACATT TERM 909 2281815 - 2281859 + F 93 -18.5 -3.34398 | opp_overlap 2281821, overlap 2281813 2281816 CGGCTGACGTTCCGA TACAAATCCGGTGGCCACGGC AAT GCCGCGGCCGCCGGATTCGCG TGTTTCCGGCAAACA TERM 910 2281816 - 2281858 + F 91 -19.8 -2.60496 | opp_overlap 2281821, overlap 2281815 2281813 GGCTGACGTTCCGAT ACAAATCCGGTGGCCACGGC AAT GCCGCGGCCGCCGGATTCGC GTGTTTCCGGCAAAC TERM 911 2281853 - 2281821 - f 100 -22.7 -4.03413 | opp_overlap 2281816 2281815 2281813 ACGTTCCGATACAAA TCCGGTGGCCACGGC AAT GCCGCGGCCGCCGGA TTCGCGTGTTTCCGG MSMEG_2202 2281948 - 2283312 + | dimethylaniline monooxygenase [N-oxide-forming] 5 MSMEG_2203 2283309 - 2284205 + | alpha/beta hydrolase TERM 912 2284259 - 2284232 - T 84 -14.2 -3.64599 | opp_overlap 2284232 2284235 CGAGCAGACGTGAAA CTGCGCGAAATC CCGC GTTTTCGCGCAG TTATGTGTCTGCTCG TERM 913 2284232 - 2284259 + T 84 -14.2 -3.65656 | opp_overlap 2284232, overlap 2284235 CGAGCAGACGTGAAA CTGCGCGAAATC CCGC GTTTTCGCGCAG TTATGTGTCTGCTCG MSMEG_2204 2285101 - 2284280 - | carveol dehydrogenase ((+)-trans-carveol dehydrogenase) MSMEG_2205 2286337 - 2285144 - | putative acyl-CoA dehydrogenase fabG 2286455 - 2287189 + | 3-ketoacyl-(acyl-carrier-protein) reductase TERM 914 2287256 - 2287300 + G 74 -13.5 -3.28712 | overlap 2287259 ACGGCGGCATGTTCC GGTCTCTCACCGCGGTCGACC TCG GGGTGACCGCGCTGAAAGGTC TTCTGGAGCGCACCG MSMEG_2207 2287186 - 2288409 + | acetyl-CoA acetyltransferase MSMEG_2208 2288417 - 2289610 + | acyl-CoA dehydrogenase MSMEG_2209 2289614 - 2290282 + | transcriptional regulator, GntR family protein MSMEG_2211 2292370 - 2291531 - | DNA-binding protein TERM 915 2292889 - 2292846 - g 78 -12.5 -3.71848 | TCTGCTCATCAACAA CGCCGGT-GTCATGACGCCGC CCGA GCGGCGG-ACGACCACCGACG GGTTCGAGTCGCAGT MSMEG_2212 2292544 - 2293488 + | short chain dehydrogenase MSMEG_2213 2293527 - 2294720 + | O-methyltransferase TERM 916 2294966 - 2294986 + T 76 -2.3 -4.92756 | overlap 2294968 CGACCACGGTTCGCC GAAGCCCCG CAC CAGGGCGCC TTTGTTTTTCATCGT MSMEG_2215 2296497 - 2294995 - | AMP-binding enzyme MSMEG_2216 2297974 - 2296490 - | AMP-binding enzyme MSMEG_2217 2299418 - 2297967 - | AMP-dependent synthetase and ligase MSMEG_2218 2300200 - 2299418 - | enoyl-CoA hydratase/isomerase family protein MSMEG_2219 2301003 - 2300197 - | enoyl-CoA hydratase/isomerase family protein MSMEG_2220 2301845 - 2301024 - | enoyl-CoA hydratase/isomerase MSMEG_2221 2301934 - 2302098 + | hypothetical protein MSMEG_2222 2301963 - 2302109 + | hypothetical protein MSMEG_2223 2302131 - 2303000 + | enoyl-CoA hydratase/isomerase family protein MSMEG_2224 2303045 - 2304229 + | acetyl-CoA C-acyltransferase MSMEG_2225 2305031 - 2304294 - | transcriptional regulator, TetR family protein TERM 917 2304994 - 2305004 + g 70 -8.2 -3.85698 | opp_overlap 2304985 ATGGAACCGCGTTCG CGCC GTT GGCG TTTCTCAGCGGCCGG MSMEG_2226 2305179 - 2305009 - | hypothetical protein MSMEG_2227 2305317 - 2306081 + | enoyl-CoA hydratase MSMEG_2228 2306091 - 2306888 + | oxidoreductase, short chain dehydrogenase/reductase family protein MSMEG_2229 2307025 - 2307846 + | enoyl-CoA hydratase TERM 918 2308518 - 2308548 + G 70 -14.7 -2.75267 | gap 1, overlap 2308515 GTGCACGACCCGGTG TGGGCGCGCCTGGC CGAG GCC-GGCGTGCCCG TGGTGTTCCACCTTT MSMEG_2230 2307861 - 2309111 + | amidohydrolase family protein MSMEG_2231 2309115 - 2310743 + | acyl-CoA synthetase MSMEG_2232 2310740 - 2311594 + | amidohydrolase family protein MSMEG_2233 2311599 - 2312648 + | acyl-CoA dehydrogenase domain-containing protein TERM 919 2313538 - 2313489 - g 70 -12.8 -3.29144 | gap 3 CCACGCCGCCGACAA CGTC-GCCGCGCTGGTCGGCACGCG TGA CGC-CGCCGGCC-GCGCAGCCGTCG ATGACGGCTCGGTCG MSMEG_2234 2312674 - 2313864 + | acyl-CoA dehydrogenase middle domain-containing protein MSMEG_2235 2315121 - 2313886 - | amidohydrolase family protein MSMEG_2236 2316362 - 2315214 - | putative thiolase MSMEG_2237 2316524 - 2318806 + | anaerobic dehydrogenase, typically MSMEG_2238 2318803 - 2320329 + | aldehyde dehydrogenase (NAD) family protein TERM 920 2320339 - 2320358 + T 80 -5 -4.7329 | ACGTGAGTTTTCCGC GAGCAG ACACAAAA CTGCTC TTTTTCAGTGATTTT MSMEG_2239 2321103 - 2320363 - | transcriptional regulator, TetR family protein MSMEG_2240 2322314 - 2321106 - | cytochrome P450 TERM 921 2322579 - 2322614 + G 73 -9.6 -3.85698 | gap 1, overlap 2322597 CATTCCCGGCAGGGC GGAGCGGCCGACGTGCT GGC GGCGCAGCG-CCGCTCC TTTCTCGACGACGGG MSMEG_2242 2322534 - 2324021 + | coniferyl aldehyde dehydrogenase MSMEG_2241 2325657 - 2324005 - | acyl-CoA synthetase MSMEG_2243 2326282 - 2325677 - | isochorismatase family protein MSMEG_2244 2327307 - 2326291 - | Rieske (2Fe-2S) domain-containing protein TERM 922 2327916 - 2327905 - g 76 -2.2 -4.76041 | GAGACCTACGAAAAA CGTG ACAG CACA TGGGTGATCACCAGC MSMEG_2245 2327539 - 2327985 + | bile-acid 7-alpha dehydratase MSMEG_2246 2328650 - 2327988 - | hypothetical protein TERM 923 2328976 - 2329010 + G 70 -15.7 -2.81872 | gap 1, overlap 2328973 CGACATCTTCGACAC CGGCGCGGT-GGCCGC GGCG GTGGCCGACCGCGACG TGGTGTTCTACTGCG MSMEG_2247 2328800 - 2329819 + | dihydrokaempferol 4-reductase MSMEG_2249 2329816 - 2330946 + | hypothetical protein MSMEG_2248 2333096 - 2330943 - | two-component system sensor kinase MSMEG_2250 2333091 - 2333234 + | hypothetical protein MSMEG_2251 2333298 - 2333648 + | nitrate/nitrite response regulator protein MSMEG_2252 2333717 - 2335201 + | flavin-type hydroxylase MSMEG_2253 2335527 - 2335246 - | hypothetical protein MSMEG_2254 2335507 - 2336553 + | oxalate decarboxylase OxdC, putative TERM 924 2336547 - 2336563 + Tr 72 -3.6 -4.62069 | GCGCAACCCGCTGGA CCGCTG AGCGG CAACGG TTTTTCGGATCGCGC MSMEG_2255 2338136 - 2336583 - | carboxyl transferase domain-containing protein MSMEG_2256 2338240 - 2339292 + | hypothetical protein MSMEG_2257 2339303 - 2340538 + | cytochrome P450-terp TERM 925 2340543 - 2340595 + T 89 -18.4 -3.07043 | gap 1 CGTTGCGCTGAGCAT TCCGCGTCAGCAGCAGCGGGCGCCG GGGT TGGCGTCCGC-GCTGCTGTGGCGCA TCTTCCAGTAGTCGC MSMEG_2258 2340752 - 2340549 - | hypothetical protein MSMEG_2259 2342992 - 2340686 - | carbon starvation protein A MSMEG_2260 2344226 - 2343165 - | putative transcriptional regulator MSMEG_2261 2344455 - 2345024 + | hypothetical protein hybA 2345095 - 2346066 + | hydrogenase-2, small subunit hybC 2346098 - 2347705 + | hydrogenase-2, large subunit MSMEG_2264 2347746 - 2348543 + | peptidase M52, hydrogen uptake protein MSMEG_2266 2348549 - 2348812 + | hypothetical protein MSMEG_2265 2350169 - 2348802 - | hypothetical protein MSMEG_2267 2348829 - 2350079 + | TPR repeat-containing protein TERM 926 2350154 - 2350111 - Gg 70 -12.3 -3.38291 | GCCAGAACTCGAGAA GCTGGCCCAGCGCGTGGAC AACGCG GTCCGCGCGCTGGTCGACC TGGATCCCGAGGCAC MSMEG_2268 2350076 - 2350963 + | hypothetical protein TERM 927 2351309 - 2351270 - g 78 -17 -2.75183 | gap 1, overlap 2351267 AGCCCGACGGAACCA CCGAGGGACGTGCCGCTGG CGG CC-GCGGCCCGGCCCGCGG GATGAACCTGCCCAC MSMEG_2269 2350975 - 2352150 + | NHL repeat-containing protein MSMEG_2270 2352162 - 2352983 + | hypothetical protein hypB 2353769 - 2352990 - | hydrogenase accessory protein HypB hypA 2354117 - 2353782 - | hydrogenase nickel insertion protein HypA hypF 2354278 - 2356566 + | [NiFe] hydrogenase maturation protein HypF hypC 2356566 - 2356826 + | hydrogenase assembly chaperone HypC/HupF hypD 2356823 - 2357926 + | hydrogenase expression/formation protein HypD hypE 2357919 - 2358992 + | hydrogenase expression/formation protein HypE ligB 2360522 - 2358993 - | ATP-dependent DNA ligase MSMEG_2278 2362238 - 2360646 - | membrane-bound oxidoreductase TERM 928 2362464 - 2362407 - g 71 -10.4 -3.73783 | gap 2, overlap 2362404 GATCGAAGGCAAGAA GGCC-GT-CATCGTCGGCGGCGCGTCGG GCTT CGGCCGCGCGACCGCCGAGGCACTGGCC AAGCGCGGTGCCACC MSMEG_2279 2362387 - 2363154 + | 3-hydroxyacyl-CoA dehydrogenase type-2 TERM 929 2363200 - 2363156 - f 86 -12.8 -3.90112 | overlap 2363160 TCGCTCCCAAGTAAA GTGATCTGGTCGTGGCCGGT GCCGA ACCGGCCACGCCGAAACCGC CGACGAGGGAGACGC MSMEG_2280 2363217 - 2364947 + | pyruvate dehydrogenase MSMEG_2282 2365655 - 2366356 + | IS1096, tnpR protein MSMEG_2283 2367686 - 2366364 - | IS1096, tnpA protein MSMEG_2285 2368080 - 2368895 + | methyltransferase type 11 TERM 930 2369590 - 2369616 + G 72 -14.4 -3.16564 | opp_overlap 2369584 AACAACGTACTGCTG CGCCGTGAGGTC CCC GAGCTCGCGGCG TTCATCGACTGGGAG MSMEG_2286 2368918 - 2369979 + | aminoglycoside phosphotransferase MSMEG_2287 2370769 - 2370008 - | transport protein MSMEG_2288 2370961 - 2371452 + | hypothetical protein MSMEG_2289 2373032 - 2371548 - | cytochrome p450 TERM 931 2373109 - 2373124 + H 81 -7.6 -4.54727 | overlap 2373120 ATCTTGGATGTCATA CTTGAC GCAT GTCAAG TTTTGATTTGGCGCG MSMEG_2290 2373164 - 2373823 + | transcriptional regulator, TetR family protein MSMEG_2291 2373847 - 2374710 + | short chain dehydrogenase MSMEG_2292 2376248 - 2374713 - | alkaline phosphatase MSMEG_2293 2377534 - 2376350 - | hypothetical protein dinB 2378615 - 2377545 - | DNA polymerase IV MSMEG_2295 2379234 - 2378620 - | transcriptional regulator, TetR family protein MSMEG_2296 2379342 - 2379905 + | secreted protein TERM 932 2379932 - 2379967 + F 100 -24.1 -3.83026 | gap 1, opp_overlap 2379955 ACGTTTTCTCTCCAA GCCGCCGGCGCGGGTC CGAAC GACCC-CGCCGGCGGC TTTGCTGTCCGGGGG TERM 933 2380248 - 2380218 - f 85 -16.8 -3.06796 | opp_overlap 2380219 CCGGAGCGCAGCGAA CCCGGCCGAGTCGG TTT CCGAACCGGCCGGA TGGCTGGCCCGGATG MSMEG_2297 2380379 - 2380618 + | glutaredoxin MSMEG_2299 2381113 - 2383233 + | ribonucleotide-diphosphate reductase subunit alpha TERM 934 2383256 - 2383302 + T 100 -20.3 -3.66178 | AGTTTTTCGCCGAGA GTGCGGTTTCATACGTGACAC GCCGA GTGTCGCGGATGGGACCGCAC TTTCGCGTTGAGCGG TERM 935 2384491 - 2384476 - T 73 -11.8 -3.34715 | overlap 2384474 GACCCTCGCCAAACA GGCCGC CCGC GCGGCC GCAGGCAAGGTCGCG MSMEG_2301 2384956 - 2384537 - | glyoxalase/bleomycin resistance protein/dioxygenase MSMEG_2302 2385353 - 2385126 - | hypothetical protein MSMEG_2303 2385228 - 2386637 + | integral membrane transporter MSMEG_2304 2386634 - 2386777 + | hypothetical protein MSMEG_2306 2386828 - 2387679 + | putative acetyltransferase MSMEG_2305 2388226 - 2387651 - | TetR-family protein transcriptional regulator TERM 936 2388182 - 2388197 + g 71 -11.8 -3.63782 | opp_overlap 2388166, overlap 2388188 2388190 CGCCTGCTCGTTGCG GCGCGC GTCG GCGCGC TTTCGCGTCGTCTTG TERM 937 2388250 - 2388296 + H 71 -13.8 -2.78384 | opp_overlap 2388253, overlap 2388253 CCTCTCGTCCCTTGA TAAGCGGAACGACGCTCCGTAT CGT AGGGGGAGCATTGTTCCGCTTA TATGGTGCCAGGCGG TERM 938 2388253 - 2388293 + H 72 -11.1 -3.54475 | opp_overlap 2388253, overlap 2388250 CTCGTCCCTTGATAA GCGGAACGACGCTCCGTAT CGT AGGGGGAGCATTGTTCCGC TTATATGGTGCCAGG TERM 939 2388546 - 2388576 + G 71 -9.6 -3.78775 | overlap 2388547 CGCTACTGTCGGCGC TCGCGGCGCAGACG AAG CGTCTGCGTATCGG TTTGATGGTGACCAG MSMEG_2307 2388350 - 2389228 + | hypothetical protein TERM 940 2389246 - 2389279 + T 91 -16.9 -3.58343 | opp_overlap 2389246, overlap 2389248 ACCGCGAGTGTGAAA CCTCTGCGAAAAATC GGCA GATTTCTCGCAGAGG TTTCACACTCGTGAG TERM 941 2389279 - 2389246 - T 100 -19.1 -3.57263 | opp_overlap 2389246 2389248 ACCGCGAGTGTGAAA CCTCTGCGAAAAATC GGCA GATTTCTCGCAGAGG TTTCACACTCGTGAG MSMEG_2308 2390485 - 2389298 - | geranylgeranyl reductase TERM 942 2390366 - 2390380 + g 70 -9.2 -3.85698 | GCCGCACGGCTTGTC GCGGGG GAA CTCCGC TTTGTCCAGGACGAC TERM 943 2390570 - 2390560 - H 72 -8.2 -4.17048 | opp_overlap 2390557 2390560 2390560, overlap 2390561 GTGGCGGGAAAACAA CCGG CCA CCGG GGGTGATCGCGTGTT MSMEG_2309 2390636 - 2391373 + | transcriptional regulatory protein TERM 944 2391978 - 2392003 + G 71 -11.1 -3.55444 | GGCGCGGCTTTTCAC TCGGCGCAGTG GGAC CACAGCGTCGA TTTGCGCGGTAAGCG MSMEG_2310 2391489 - 2392988 + | monooxygenase MSMEG_2311 2393083 - 2393598 + | hypothetical protein MSMEG_2312 2393652 - 2393801 + | hypothetical protein nrdF 2393815 - 2394789 + | ribonucleotide-diphosphate reductase subunit beta TERM 945 2394803 - 2394769 - f 71 -12 -3.1855 | GCCGTCAACACCGAA GACGAGGACTGGGACT TCT AGACCCGGTCCACGCC GTGCACGCAGGAACC MSMEG_2314 2394859 - 2396241 + | putative esterase family protein MSMEG_2315 2396241 - 2397821 + | hypothetical protein TERM 946 2399417 - 2399392 - T 100 -21.9 -4.13767 | opp_overlap 2399392 CCCGTGACGGCAAAA GGCAGCCGGCC CGGG GGCCGGCTGCC TTTTGTGGATGACGT TERM 947 2399392 - 2399417 + T 100 -21.9 -4.42653 | opp_overlap 2399392 CCCGTGACGGCAAAA GGCAGCCGGCC CGGG GGCCGGCTGCC TTTTGTGGATGACGT MSMEG_2317 2400481 - 2399432 - | alcohol dehydrogenase, zinc-containing MSMEG_2318 2400944 - 2400669 - | GTP cyclohydrolase II TERM 948 2400850 - 2400802 - G 70 -14.7 -2.82516 | gap 3, opp_overlap 2400794 CCGGTGATCAGCACA CCGCCGGTCTGCGATTCCTGCCGG CCTG CCAGCAGG-AT-GC-GTCCGGCGG CGACCTCGTCGTTCA MSMEG_2319 2402027 - 2400954 - | periplasmic binding protein TERM 949 2404118 - 2404165 + G 82 -15.6 -3.40403 | gap 1, overlap 2404119 2404144 GGCACAAGGTCGAGC TGCGCAACGTCGAGCAGGTCGTG ATC CGCGGCCGGCTC-ACGTTGGGCG TTCTGGTGGCCGCGC TERM 950 2404119 - 2404164 + G 73 -16.9 -2.64099 | gap 1, overlap 2404118 2404144 GCACAAGGTCGAGCT GCGCAACGTCGAGCAGGTCGTG ATC CGCGGCCGGCTC-ACGTTGGGC GTTCTGGTGGCCGCG TERM 951 2405045 - 2405027 - g 74 -16 -2.81133 | TACCGATGGAGCAGA CCGTCGCC GTC GGCGACGG CGCCAACGACATCGA serB 2404009 - 2405250 + | phosphoserine phosphatase TERM 952 2405489 - 2405471 - g 85 -16 -3.60627 | CCAGCCGAGGCCAAA CGGTGCCC GGC GGGCACCG TGGAGAAGTTCGAGG MSMEG_2322 2405378 - 2405671 + | hypothetical protein MSMEG_2323 2407112 - 2405673 - | GntR-family protein transcriptional regulator MSMEG_2324 2407176 - 2407322 + | hypothetical protein MSMEG_2325 2407319 - 2408014 + | integral membrane protein MSMEG_2326 2407969 - 2408817 + | ABC-type molybdenum transport system, ATPase component MSMEG_2327 2408810 - 2409631 + | nudix hydrolase MSMEG_2328 2409628 - 2410335 + | enoyl-CoA hydratase MSMEG_2329 2410370 - 2411350 + | methyltransferase, UbiE/COQ5 family protein TERM 953 2411410 - 2411453 + G 83 -20.2 -2.78463 | TCGGCGGCAGGCAGG CAGGCGCTCGACGAGGCCGG GAAA CTGGCCCTGTCGGGCGCCCG TCTGGTCAACGACAT MSMEG_2330 2411359 - 2412522 + | SAM-dependent methyltransferase TERM 954 2412547 - 2412563 + F 70 -7.9 -3.95584 | opp_overlap 2412547 2412548, overlap 2412542 ACGCTTGAATCGAAA TGCCGGC GCG GTCGGCG TTTGGTTGATCGCCC TERM 955 2413182 - 2413203 + G 81 -13.1 -3.9461 | CTACCAGAACTTCGC GATCACCGA CGAT TCGGTGATC TTCTTCTTCGACCGC MSMEG_2331 2412595 - 2413296 + | immunogenic protein MPB64/MPT64 MSMEG_2332 2414872 - 2413328 - | amino acid carrier protein MSMEG_2334 2414879 - 2415001 + | hypothetical protein MSMEG_2333 2416273 - 2414990 - | hypothetical protein TERM 956 2415651 - 2415611 - G 79 -14.5 -3.28712 | GGTCTGGCCGGAGAA CGCGGGCGCCGCCGCGACG GGG CACCGCGACCGGGCCAGCG GGCAGTCGGCCAGAC TERM 957 2416111 - 2416125 + g 72 -5.6 -4.44245 | overlap 2416113 CCGCGCGCAGCGACT GGGCTC CGG GAGCAC TTTTGTAGCTGCTGT MSMEG_2335 2416370 - 2417113 + | hexapeptide transferase family protein fni 2417887 - 2418912 + | isopentenyl pyrophosphate isomerase MSMEG_2338 2418945 - 2419571 + | IS1096, tnpR protein MSMEG_2339 2420901 - 2419579 - | IS1096, tnpA protein MSMEG_2340 2420692 - 2421201 + | hypothetical protein MSMEG_2342 2421207 - 2422448 + | putative glycosyltransferase MSMEG_2341 2422818 - 2422408 - | hypothetical protein MSMEG_2343 2423842 - 2422826 - | methylesterase MSMEG_2344 2425356 - 2423839 - | dehydrogenase MSMEG_2346 2426977 - 2426030 - | phytoene synthase MSMEG_2347 2428527 - 2426974 - | phytoene dehydrogenase TERM 958 2428574 - 2428552 - R 93 -16.2 -3.8901 | opp_overlap 2428546, overlap 2428553 CGGCAAAGCACGAAA GCGCCGGCGG ACA CCGCCGGCGA GGTCGGTATCTCGCT TERM 959 2428573 - 2428553 - R 93 -19.7 -2.92924 | opp_overlap 2428546, overlap 2428552 GGCAAAGCACGAAAG CGCCGGCGG ACA CCGCCGGCG AGGTCGGTATCTCGC TERM 960 2428669 - 2428651 - R 75 -10.2 -3.85698 | opp_overlap 2428668 GCGGCGGGCTACAAA CGTCCGGT CTT ACCGGTCG GGCAGCGCGTGTTCG MSMEG_2349 2431571 - 2430027 - | glycosyl hydrolase, family protein 57 MSMEG_2350 2432341 - 2431568 - | hypothetical protein etfB 2432570 - 2433361 + | electron transfer flavoprotein, beta subunit etfA 2433444 - 2434385 + | electron transfer flavoprotein, alpha subunit TERM 961 2434395 - 2434434 + F 100 -23 -5.00616 | gap 1, overlap 2434400 2434424 GGCTGATCACCTCAT CACGCGGACCCCGGCGCAC CTG GTGCGCCGGGGTTC-TGTG TTTTTTGCCGGACCC TERM 962 2434400 - 2434430 + F 100 -24.8 -3.66166 | overlap 2434395 2434424 ATCACCTCATCACGC GGACCCCGGCGCAC CTG GTGCGCCGGGGTTC TGTGTTTTTTGCCGG TERM 963 2434646 - 2434615 - g 78 -17.2 -2.71731 | opp_overlap 2434637 CGCAGCGCTCAACGA GGCGGGCCACGACG TCGT CGCCGCGGCCCGCG ACACGGGTGCCGATG MSMEG_2353 2434550 - 2435293 + | secreted protein MSMEG_2354 2435295 - 2435942 + | oxidoreductase TERM 964 2436462 - 2436493 + G 73 -15.9 -2.62184 | CCGCGCCGTGGTGCG GCAGGACCACCGC AACGGC GCGGTGGTGCTGC TGATGTGGGCGGGCA MSMEG_2355 2436064 - 2436912 + | hypothetical protein MSMEG_2356 2436909 - 2437739 + | acyltransferase MSMEG_2357 2437787 - 2438995 + | cysteine desulfurase trmU 2438992 - 2440062 + | tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase MSMEG_2359 2440088 - 2441098 + | methionine synthase, vitamin-B12 independent MSMEG_2360 2442674 - 2441100 - | 4-coumarate:CoA ligase MSMEG_2361 2443087 - 2442671 - | phosphoribosylglycinamide formyltransferase TERM 965 2443129 - 2443113 - H 72 -2.9 -4.64598 | TAATCACCCGAAAAA TTGCCGA CGA CCTGCAA GGGGTGCTGATGGGT ligA 2443172 - 2445277 + | NAD-dependent DNA ligase LigA MSMEG_2363 2446007 - 2445348 - | amino acid-binding ACT gatC 2446108 - 2446407 + | aspartyl/glutamyl-tRNA amidotransferase subunit C gatA 2446404 - 2447888 + | aspartyl/glutamyl-tRNA amidotransferase subunit A TERM 966 2448770 - 2448723 - f 74 -10.5 -3.73534 | gap 2, opp_overlap 2448756 2448757, overlap 2448711 2448724 2448726 GAAGCGCATCAACAA GGAGGTGCGCGTCACGGTGCTCG GGCA CGTGCAGCGCGGCG-GCACC-CC GACGGCCTACGACCG gatB 2449026 - 2450537 + | aspartyl/glutamyl-tRNA amidotransferase subunit B MSMEG_2368 2451234 - 2450596 - | transcriptional regulator TERM 967 2450941 - 2450888 - G 75 -16.9 -2.96452 | gap 2, opp_overlap 2450892 ACGGTCAGAATGAGA CGCCACCGGGTC-G-GGTTCTCCAG GACAGA CTGGAGAAACGCTGACACGGTGGCG GTGTAGGCCTCGGTG MSMEG_2369 2452446 - 2451352 - | LppZ protein TERM 968 2451760 - 2451742 - G 79 -14.6 -3.35679 | GTCGGTGACGTACAA CGACCCGT CGG ACGGGTCG ATGCACATGCCGCCA MSMEG_2370 2452620 - 2453462 + | DoxX subfamily protein, putative TERM 969 2453481 - 2453501 + T 70 -14.1 -2.52464 | GCCTTTCGGGACCGT TACGCGTGA TCG TCACGCGTA TGGGTTCGGAACCCG MSMEG_2371 2453882 - 2453493 - | low molecular weight protein antigen 6 TERM 970 2454088 - 2454115 + H 100 -12.8 -5.4505 | gap 1 AGCATCGACGCGCCA CCCTCGTACAGCA GCC TGCTG-ACGGGGG TTTTTTGTTGCCCAC ilvB 2454205 - 2456061 + | acetolactate synthase 1 catalytic subunit ilvH 2456125 - 2456637 + | acetolactate synthase 3 regulatory subunit ilvC 2456694 - 2457707 + | ketol-acid reductoisomerase TERM 971 2457721 - 2457767 + T 100 -34.7 -3.37464 | opp_overlap 2457730, overlap 2457730 GAGTTTCGCCGACAT CGACGAAAAGGGCCGCCCTCG CACGC CGGGGGCGGCCCTTTTCGTCG TTCTGCGGTTGCTAC TERM 972 2457730 - 2457758 + T 100 -21 -4.37527 | opp_overlap 2457730, overlap 2457721 CGACATCGACGAAAA GGGCCGCCCTCG CACGC CGGGGGCGGCCC TTTTCGTCGTTCTGC TERM 973 2457758 - 2457730 - T 100 -18.8 -4.29738 | opp_overlap 2457730 2457721 CGACATCGACGAAAA GGGCCGCCCTCG CACGC CGGGGGCGGCCC TTTTCGTCGTTCTGC wrbA 2458390 - 2457779 - | NAD(P)H:quinone oxidoreductase, type IV MSMEG_2376 2458879 - 2458418 - | hypothetical protein MSMEG_2377 2460336 - 2458912 - | P49 protein serA 2460414 - 2462000 + | D-3-phosphoglycerate dehydrogenase leuB 2461997 - 2463019 + | 3-isopropylmalate dehydrogenase MSMEG_2380 2464348 - 2463113 - | sugar transporter family protein MSMEG_2381 2464399 - 2465580 + | hypothetical protein MSMEG_2382 2465631 - 2466410 + | 5-carboxymethyl-2-hydroxymuconate delta-isomerase gltX 2466407 - 2467867 + | glutamyl-tRNA synthetase TERM 974 2468244 - 2468203 - T 100 -22.5 -3.29144 | gap 1, opp_overlap 2468204 2468205 2468211, overlap 2468205 2468211 CCATCGGGGGTACAA CAGCGAAAGGCGCTCGGTTC CAC GAACTGAGCGCCTTTCGC-G TTTCCGGCCCGCCCG TERM 975 2468204 - 2468244 + T 100 -24.9 -3.53012 | opp_overlap 2468203 2468205 2468211, overlap 2468205 2468211 CATCGGGGGTACAAC AGCGAAAGGCGCTCGGTTC CAC GAACTGAGCGCCTTTCGCG TTTCCGGCCCGCCCG TERM 976 2468205 - 2468243 + T 100 -28.4 -2.71712 | opp_overlap 2468203 2468205 2468211, overlap 2468204 2468211 ATCGGGGGTACAACA GCGAAAGGCGCTCGGTTC CAC GAACTGAGCGCCTTTCGC GTTTCCGGCCCGCCC TERM 977 2468243 - 2468205 - T 100 -26.2 -3.21395 | opp_overlap 2468205 2468204 2468211, overlap 2468203 2468211 ATCGGGGGTACAACA GCGAAAGGCGCTCGGTTC CAC GAACTGAGCGCCTTTCGC GTTTCCGGCCCGCCC TERM 978 2468211 - 2468237 + T 93 -18.8 -3.71649 | opp_overlap 2468205 2468203 2468211, overlap 2468205 2468204 GGTACAACAGCGAAA GGCGCTCGGTTC CAC GAACTGAGCGCC TTTCGCGTTTCCGGC TERM 979 2468237 - 2468211 - T 91 -16.6 -3.79071 | opp_overlap 2468211 2468205 2468204, overlap 2468205 2468203 GGTACAACAGCGAAA GGCGCTCGGTTC CAC GAACTGAGCGCC TTTCGCGTTTCCGGC MSMEG_2386 2469082 - 2468381 - | transcriptional regulator, IclR family protein leuC 2469194 - 2470648 + | isopropylmalate isomerase large subunit leuD 2470672 - 2471265 + | isopropylmalate isomerase small subunit TERM 980 2471858 - 2471834 - g 74 -12.8 -3.62597 | overlap 2471819 GGCACCGGCCAAGAA GGCCGCCGCC AAGAA GACGGCGACC AAGGCTGCGGCGAAG hup 2471469 - 2472095 + | DNA-binding protein HU TERM 981 2472149 - 2472098 - T 100 -26 -2.78679 | gap 1, opp_overlap 2472100 2472107 2472144, overlap 2472107 GGGCCGCAGGTAAAT TCCGCAAAAGGCACGCCGCGGGGTG ATT CACCCC-CGGCGTGCCTTTCGCGTT GGTGCGTTACTTCTC TERM 982 2472100 - 2472147 + T 100 -30.8 -3.23598 | gap 1, opp_overlap 2472098 2472107, overlap 2472107 2472144 GCCGCAGGTAAATTC CGCAAAAGGCACGCCGCGGGGTG ATT CACCCC-CGGCGTGCCTTTCGCG TTGGTGCGTTACTTC TERM 983 2472107 - 2472140 + T 100 -24.7 -3.67976 | gap 1, opp_overlap 2472098 2472107, overlap 2472100 GTAAATTCCGCAAAA GGCACGCCGCGGGGTG ATT CACCCC-CGGCGTGCC TTTCGCGTTGGTGCG TERM 984 2472140 - 2472107 - T 100 -24.7 -4.12942 | gap 1, opp_overlap 2472107 2472100, overlap 2472098 GTAAATTCCGCAAAA GGCACGCCGCGGGGTG ATT CACCCC-CGGCGTGCC TTTCGCGTTGGTGCG MSMEG_2390 2473124 - 2472156 - | hydrolase, NUDIX family protein ppk 2475352 - 2473142 - | polyphosphate kinase MSMEG_2392 2476046 - 2475381 - | hypothetical protein gpsA 2476113 - 2477108 + | NAD(P)H-dependent glycerol-3-phosphate dehydrogenase MSMEG_2394 2477113 - 2478222 + | cystathionine gamma-lyase TERM 985 2478287 - 2478251 - f 95 -14.9 -4.07568 | opp_overlap 2478249 2478248 GCCCGTTGCCGAAAA CGTCGCGGCCCGCGGCC CGT GGCCGCCCGCCGCGGGG AGATTTCGGGGCCGC TERM 986 2478670 - 2478704 + G 78 -17.8 -2.74523 | overlap 2478667 2478672 GTTGCTGGCGCTGGG CAACGGCCCCGGCGAG ATC CTCGCCGCGGTCGATG TGGTGTTCCCCGTGC TERM 987 2478672 - 2478702 + G 72 -14.6 -2.91728 | overlap 2478670 2478667 TGCTGGCGCTGGGCA ACGGCCCCGGCGAG ATC CTCGCCGCGGTCGA TGTGGTGTTCCCCGT TERM 988 2479462 - 2479519 + G 78 -6.2 -4.58395 | gap 3, overlap 2479464 CGCGATGGTCGACAC CGCGATCGCGCGGGGCACCG-GC-CTG CGCTGAT CAGCGCGCGGGGCCCGGCTCGA-CGGG TTTTTCGGGCATGGC ddl 2478371 - 2479492 + | D-alanyl-alanine synthetase A MSMEG_2396 2480080 - 2479493 - | hypothetical protein MSMEG_2397 2480333 - 2480097 - | transcriptional regulatory protein, AsnC family protein thiL 2480440 - 2481453 + | thiamine monophosphate kinase ung 2481480 - 2482163 + | uracil-DNA glycosylase TERM 989 2482538 - 2482519 - gT 76 -9.2 -4.15201 | overlap 2482520 2482522 ATGAACCAAACGAAA GGACCGGC AGAC GCCGGTCA GACGCGAGCGCTCAG TERM 990 2482537 - 2482520 - gT 72 -12.7 -3.08036 | overlap 2482519 2482522 TGAACCAAACGAAAG GACCGGC AGAC GCCGGTC AGACGCGAGCGCTCA rpmB 2482749 - 2482555 - | 50S ribosomal protein L28 MSMEG_2401 2482174 - 2482803 + | hypothetical protein MSMEG_2402 2482984 - 2484648 + | dihydroxyacetone kinase TERM 991 2486306 - 2486282 - g 79 -7.1 -4.4078 | gap 1, overlap 2486283 2486285 CGGCGGCAAGGAAAA CGA-GGGCCG CCAGGC CGGCCCGCCG CCCATCACGGTGGTC recG 2484645 - 2486906 + | ATP-dependent DNA helicase RecG TERM 992 2487494 - 2487457 - g 70 -12.9 -3.34233 | overlap 2487448 2487461 GGACAAGGGCGACAA GGAAC-CCGCGTTGTGG ATGCCG CC-CAACGCGGCGTTCC ACTGTCAGTACGCGA MSMEG_2404 2486903 - 2487607 + | extracellular deoxyribonuclease MSMEG_2405 2488116 - 2487622 - | MarR-family protein transcriptional regulator MSMEG_2406 2488188 - 2488766 + | transcriptional regulator, TetR family protein, putative MSMEG_2407 2489648 - 2488797 - | morphine 6-dehydrogenase MSMEG_2408 2490481 - 2489654 - | 2,5-diketo-D-gluconic acid reductase A TERM 993 2491085 - 2491061 - g 82 -14.9 -3.40403 | GGCCCCCGAGCACAA GGCGCCCGCGG CTG CCGAGGACGCC TACGCGGCCTATCAG MSMEG_2409 2490579 - 2491631 + | alpha/beta hydrolase fold family protein MSMEG_2410 2491665 - 2492393 + | putative serine-threonine protein kinase MSMEG_2411 2492393 - 2493025 + | integral membrane protein pyc 2493061 - 2496444 + | pyruvate carboxylase TERM 994 2496728 - 2496695 - g 72 -4.4 -4.59773 | overlap 2496697 GGTGATCGCCAAAAA CATCGCGGCACTCG ACGTCG CGGGTGCCACCGTG CGACGCGGCACCGCC MSMEG_2413 2496486 - 2496995 + | putative methyltransferase coaD 2497021 - 2497497 + | phosphopantetheine adenylyltransferase MSMEG_2415 2497580 - 2498158 + | hemerythrin HHE cation binding region TERM 995 2498609 - 2498581 - g 75 -8.8 -4.18018 | gap 1 CTGGCCGATGCAAAA GCCCAGGCAGACC GCAT GGTC-GCCGAGGC GCGTCAGCACAGCGA MSMEG_2416 2498281 - 2499018 + | hypothetical protein MSMEG_2417 2499088 - 2499699 + | hypothetical protein rnc 2499696 - 2500388 + | ribonuclease III mutM 2500395 - 2501252 + | formamidopyrimidine-DNA glycosylase MSMEG_2420 2502047 - 2501271 - | hypothetical protein MSMEG_2421 2502168 - 2502587 + | hypothetical protein MSMEG_2422 2502584 - 2502880 + | acylphosphatase TERM 996 2504577 - 2504541 - g 70 -12.1 -3.28712 | GTTGGCGGCCGAGAA CTTCGGTGCGGCGGCCG CGG CGGTCGCCGCGCTCAAG GAGTCCGACGGCGGC smc 2502907 - 2506494 + | chromosome segregation protein SMC ftsY 2506567 - 2508042 + | signal recognition particle-docking protein FtsY amt 2508282 - 2509631 + | ammonium transporter MSMEG_2426 2509665 - 2510003 + | nitrogen regulatory protein P-II TERM 997 2510150 - 2510107 - g 100 -11 -4.73682 | gap 1, opp_overlap 2510112, overlap 2510112 2510113 TGGCAGAACACAAAA CACAATCCGCCGGAGCCTC TCACAAG GGGGCTCCGGCGGGTT-CG TCACGGCCGGCCAAT TERM 998 2510112 - 2510146 + G 86 -19.3 -3.14132 | opp_overlap 2510107 2510112 2510113 GAACACAAAACACAA TCCGCCGGAGCCTCT CACAA GGGGGCTCCGGCGGG TTCGTCACGGCCGGC TERM 999 2510146 - 2510112 - g 90 -14.2 -4.08271 | opp_overlap 2510112, overlap 2510107 2510113 GAACACAAAACACAA TCCGCCGGAGCCTC TCACAAG GGGGCTCCGGCGGG TTCGTCACGGCCGGC TERM 1000 2510145 - 2510113 - g 82 -17.7 -3.03336 | opp_overlap 2510112, overlap 2510112 2510107 AACACAAAACACAAT CCGCCGGAGCCTC TCACAAG GGGGCTCCGGCGG GTTCGTCACGGCCGG glnD 2510091 - 2512565 + | PII uridylyl-transferase MSMEG_2428 2513411 - 2512566 - | DNA-binding protein MSMEG_2429 2513512 - 2514516 + | aldo/keto reductase ffh 2514582 - 2516150 + | signal recognition particle protein MSMEG_2431 2516150 - 2517226 + | amidohydrolase 3 TERM 1001 2517207 - 2517218 + T 79 -5.8 -4.61566 | overlap 2517173 CGGATCTGGTGATCC TGCG CGGC CGCA TTTTCTAGTTTCGCC MSMEG_2432 2518135 - 2517308 - | D-alanyl-D-alanine carboxypeptidase MSMEG_2433 2519095 - 2518205 - | D-alanyl-D-alanine carboxypeptidase MSMEG_2434 2519128 - 2519562 + | hypothetical protein MSMEG_2435 2519767 - 2520237 + | 30S ribosomal protein S16 MSMEG_2436 2520258 - 2520488 + | hypothetical protein rimM 2520523 - 2521044 + | 16S rRNA-processing protein trmD 2521059 - 2521736 + | tRNA (guanine-N(1)-)-methyltransferase MSMEG_2439 2522681 - 2521737 - | LppW protein rplS 2523015 - 2523356 + | 50S ribosomal protein L19 TERM 1002 2523360 - 2523350 - f 84 -8.2 -4.49337 | GAAGATCAAGGAAAA GCGC TGA GCGC TGAGCCTCACATGGT TERM 1003 2523585 - 2523552 - g 85 -11.7 -4.35461 | gap 1, opp_overlap 2523573 2523576, overlap 2523543 2523546 GGAACAGGACGAAAA GCCCAAGCGCAA-GCA CGG TGCCTTGCGCGAGGGC GCCATCCTGGTGACC lepB 2523424 - 2524293 + | signal peptidase I rnhB 2524304 - 2525122 + | ribonuclease HII MSMEG_2443 2525199 - 2525504 + | hypothetical protein MSMEG_2444 2526229 - 2525519 - | dienelactone hydrolase family protein MSMEG_2445 2527730 - 2526276 - | hypothetical protein MSMEG_2446 2528202 - 2527780 - | hypothetical protein MSMEG_2447 2529892 - 2528276 - | regulatory protein MSMEG_2448 2530023 - 2529889 - | hypothetical protein mmsA 2530003 - 2531496 + | methylmalonate-semialdehyde dehydrogenase MSMEG_2450 2531510 - 2532895 + | hypothetical protein TERM 1004 2532910 - 2532943 + F 100 -26.1 -4.93365 | opp_overlap 2532910 ACATCTGTGCCGAAA TGCCCGGCCGTGCGA GAGA TCGCGCGGCCGGGCA TTTTTCGTTCTCGAC TERM 1005 2532943 - 2532910 - f 100 -23.9 -3.53563 | opp_overlap 2532910 ACATCTGTGCCGAAA TGCCCGGCCGTGCGA GAGA TCGCGCGGCCGGGCA TTTTTCGTTCTCGAC MSMEG_2451 2533009 - 2533785 + | HAD-superfamily protein hydrolase, subfamily protein IIA MSMEG_2452 2533824 - 2534033 + | hypothetical protein TERM 1006 2534488 - 2534504 + G 74 -12.3 -3.55444 | opp_overlap 2534484 CGTCCAGGAGAGCCT GGCCGAA CAG TTCGGCC TTTCGCGCATCCCGA MSMEG_2453 2534312 - 2535046 + | transcriptional regulator, GntR family protein MSMEG_2454 2535043 - 2535504 + | translation initiation inhibitor MSMEG_2455 2536103 - 2535507 - | carbon monoxide dehydrogenase subunit G (CoxG) superfamily protein MSMEG_2456 2536199 - 2537197 + | 5,10-methylenetetrahydromethanopterin reductase MSMEG_2457 2537190 - 2537507 + | hypothetical protein TERM 1007 2538078 - 2538054 - g 70 -12.8 -3.30124 | TCCGATGGGCGACAA CTGGACGGCC GCGAA GGCCGGCCAG ATCACCGCCGGCTGG MSMEG_2458 2537542 - 2538522 + | hypothetical protein MSMEG_2459 2538553 - 2539353 + | transporter ATPase MSMEG_2460 2539350 - 2540198 + | transporter permease 1 TERM 1008 2540254 - 2540226 - g 78 -10.1 -4.14874 | overlap 2540217 2540215 2540229 AGAACACCCCGAAAA CCACTGCGCCTGC GGG GCTGCCGCGGTGG CGCACCCTGCTGGGC MSMEG_2461 2540195 - 2540983 + | transporter permease 2, putative TERM 1009 2541982 - 2542016 + G 74 -16.4 -2.81133 | GGTGCGGGCAGCCTG TGGGTCGCGGGGATCG TCG CGAACACCGCGATCCA TCTGCTCGGTCCCTA MSMEG_2462 2540980 - 2543313 + | carbon-monoxide dehydrogenase MSMEG_2463 2543310 - 2544191 + | nicotine dehydrogenase chain A TERM 1010 2544491 - 2544515 + G 73 -10 -3.85698 | gap 1 TGCGTCAGGCCTTCT CCGCAC-GCGG TGGG CTGCAGTGCGG TTTCTGCACGCCGGG MSMEG_2464 2544178 - 2544684 + | 2Fe-2S-binding domain-containing protein MSMEG_2465 2544747 - 2545967 + | adenine deaminase MSMEG_2466 2546004 - 2547203 + | glutaryl-CoA dehydrogenase MSMEG_2467 2547242 - 2549401 + | transketolase, central region TERM 1011 2550346 - 2550373 + G 74 -13.4 -3.30159 | opp_overlap 2550345 2550348 CACCGCCGACGAGAT CACCGAGGCGCT TTCG GGCACCTCGGTG TTGTGGGAGCGTTAC MSMEG_2468 2549414 - 2550649 + | L-carnitine dehydratase/bile acid-inducible protein F MSMEG_2469 2553918 - 2551339 - | AMP-dependent synthetase and ligase MSMEG_2470 2550646 - 2551455 + | acyl-CoA thioesterase MSMEG_2471 2556437 - 2554008 - | pyruvate dehydrogenase alpha subunit MSMEG_2472 2556536 - 2557012 + | AsnC-family protein transcriptional regulator MSMEG_2474 2558654 - 2559433 + | cutinase Cut3 TERM 1012 2559442 - 2559491 + T 95 -14.9 -4.08767 | gap 1, opp_overlap 2559469, overlap 2559443 2559476 TCCCTGACCGCCCAC CGCT-CCCCGCGGCAGGCCCGG CGAACAT CCGGGGCTGCCGCGGGTCGGCA TTTTCAGAACGTGGC TERM 1013 2559443 - 2559490 + T 89 -18.4 -3.05046 | gap 1, opp_overlap 2559469, overlap 2559442 2559476 CCCTGACCGCCCACC GCT-CCCCGCGGCAGGCCCGG CGAACAT CCGGGGCTGCCGCGGGTCGGC ATTTTCAGAACGTGG MSMEG_2475 2560349 - 2559495 - | putative oxidoreductase YdbC MSMEG_2476 2560866 - 2560435 - | MarR family protein transcriptional regulatory protein MSMEG_2477 2562006 - 2560939 - | cyclopentanol dehydrogenase MSMEG_2478 2562889 - 2562032 - | fumarylacetoacetate hydrolase family protein MSMEG_2479 2562764 - 2562925 + | hypothetical protein MSMEG_2480 2562958 - 2563698 + | transcriptional regulator, GntR family protein, putative MSMEG_2481 2563709 - 2564953 + | hypothetical protein MSMEG_2482 2565001 - 2565369 + | hypothetical protein MSMEG_2483 2565362 - 2566084 + | transcriptional regulator, IclR family protein MSMEG_2484 2566801 - 2566112 - | hypothetical protein MSMEG_2485 2568444 - 2566837 - | 3-(3-hydroxyphenyl)propionate hydroxylase TERM 1014 2568706 - 2568666 - H 85 -7.6 -4.65078 | gap 1, opp_overlap 2568667 2568693 2568697, overlap 2568667 2568669 AGATTGTCAACAAAA CTACGACCTGGTCG-GATG ATCT CATCGCGACCCGATCGCAC GTATGCGGTCAGTCC TERM 1015 2568705 - 2568667 - H 70 -11.1 -3.38324 | gap 1, opp_overlap 2568667 2568693 2568697, overlap 2568666 2568669 GATTGTCAACAAAAC TACGACCTGGTCG-GATG ATCT CATCGCGACCCGATCGCA CGTATGCGGTCAGTC MSMEG_2486 2568753 - 2570159 + | major facilitator superfamily protein TERM 1016 2570205 - 2570165 - T 100 -21.3 -2.78384 | opp_overlap 2570168 GCCCGCCTGACCACA TGAGTTGGCCCTCGGCG TGAAAAC CGCCGAGGGTCAACTCA TGTCGCGAACCGGTC TERM 1017 2570168 - 2570202 + T 89 -19.4 -2.62184 | opp_overlap 2570165 CGCCTGACCACATGA GTTGGCCCTCGGCG TGAAAAC CGCCGAGGGTCAAC TCATGTCGCGAACCG MSMEG_2487 2571472 - 2570219 - | 4-aminobutyrate aminotransferase MSMEG_2488 2571561 - 2573021 + | [NADP+] succinate-semialdehyde dehydrogenase MSMEG_2489 2573759 - 2573037 - | transcriptional regulator, GntR family protein, putative MSMEG_2490 2574385 - 2573756 - | decarboxylase MSMEG_2492 2574544 - 2577402 + | D-lactate dehydrogenase MSMEG_2491 2578571 - 2577399 - | acetylornithine deacetylase MSMEG_2493 2579775 - 2578576 - | aminotransferase, class I and II family protein TERM 1018 2578950 - 2578928 - G 74 -11.3 -3.72576 | gap 1 CCGCCGGTGAGGAAA CCCGCG-AGC AGGC GCTGCGCGGG AAGGTTGGTGCACGT MSMEG_2494 2580945 - 2579779 - | Xaa-Pro aminopeptidase MSMEG_2495 2581646 - 2580942 - | decarboxylase TERM 1019 2582269 - 2582249 - g 72 -15.4 -2.87564 | GCATCGGCCGAGAGA CCGCGCGC CTGCT GCGCGCGG CGGGTCTGGAGGTCA MSMEG_2496 2581723 - 2582772 + | NAD-binding protein TERM 1020 2583743 - 2583791 + G 82 -16.8 -3.28712 | CGGCGACGCCGTCGA CGATCGCGTCGATC-CCGGGTTGC GGC GCACCGCGGCGATCGGCGCGA-CG TTCTCGGCCGCCGAC MSMEG_2497 2582769 - 2584172 + | putative amidase MSMEG_2498 2584169 - 2584669 + | hypothetical protein MSMEG_2500 2584688 - 2585911 + | hypothetical protein MSMEG_2499 2586690 - 2585908 - | ABC transporter, membrane spanning protein, putative MSMEG_2501 2587553 - 2586687 - | ABC nitrate/sulfonate/bicarbonate family protein transporter, inner membrane subunit MSMEG_2502 2588344 - 2587550 - | transporter ATPase MSMEG_2503 2589414 - 2588395 - | hypothetical protein MSMEG_2504 2589951 - 2589424 - | 3-isopropylmalate dehydratase small subunit TERM 1021 2589734 - 2589724 - G 75 -8.2 -4.12603 | overlap 2589725 TTCACGAAACAACAA GGCC ACC GGCC GGCTCGATCCGAGCC MSMEG_2505 2591192 - 2589951 - | 3-isopropylmalate dehydratase large subunit MSMEG_2506 2592062 - 2591193 - | carboxyvinyl-carboxyphosphonate phosphorylmutase MSMEG_2507 2592839 - 2592063 - | IclR-family protein transcriptional regulator TERM 1022 2592321 - 2592344 + g 71 -2.2 -4.62471 | overlap 2592323 TGCGTACGCCCAGCC GCGCTCCCGG ATCA CCTCGAGCTC TTTTTCGAGCTTCGC TERM 1023 2592830 - 2592808 - G 76 -2.6 -4.74103 | opp_overlap 2592827, overlap 2592828 2592829 GCGTGAACTGAAAAA CAGCTCAACA CAC TGACGAACCG GTCCAGCATCTGGCC MSMEG_2508 2593267 - 2593641 + | hypothetical protein TERM 1024 2594624 - 2594649 + G 70 -12.5 -3.29043 | gap 1, opp_overlap 2594611, overlap 2594626 GACGGCGAGATCCGG CTCGCG-CGCCG TGA CGGCGTCGCGTG TTATCCGGCGCGCTT TERM 1025 2594626 - 2594647 + G 72 -13.7 -3.21276 | gap 1, opp_overlap 2594611, overlap 2594624 CGGCGAGATCCGGCT CGCG-CGCCG TGA CGGCGTCGCG TGTTATCCGGCGCGC MSMEG_2509 2593697 - 2595151 + | Mg-chelatase subunits D/I family protein, ComM subfamily protein MSMEG_2511 2596370 - 2597242 + | siderophore utilization protein MSMEG_2512 2597267 - 2598430 + | lactate 2-monooxygenase MSMEG_2513 2598528 - 2599364 + | hypothetical protein TERM 1026 2600226 - 2600255 + F 100 -13.6 -4.70626 | gap 1 GATGGACAGTTTGGT GCCGCCGGCGGTG ATCGC CACT-CCGGCGGC TTTTTCGAGTTCTTG TERM 1027 2600460 - 2600477 + F 74 -2.5 -4.7497 | overlap 2600453 GTCGGCGGGGTTGCA CATGCCG GGTG CGGCCAG TTTTTCGTCGATGGG TERM 1028 2600685 - 2600695 + F 79 -2.4 -5.06414 | TCGGCCCCGATGGCG CCGG TGA CCAG TTTTTCTTCCAGCCG TERM 1029 2600864 - 2600899 + F 70 -11.6 -3.33815 | CATCGACACCCGGGG GCCCAACTCCGCGGCG TCGG CGCAGCGGCGGCGGGC TTCCTTGACCGAGAT TERM 1030 2601651 - 2601667 + G 75 -6.5 -4.42386 | CCCTTGCCAGGCGGA CGTCGTC GGT GAAGACG TTTTGTGCGTGGGCG xerC 2601428 - 2602330 + | site-specific tyrosine recombinase XerC MSMEG_2517 2602327 - 2603208 + | hydrolase, alpha/beta fold family protein, putative MSMEG_2516 2604121 - 2603192 - | putative oxidoreductase MSMEG_2518 2604666 - 2604148 - | peptidase M23B rpsB 2604918 - 2605793 + | 30S ribosomal protein S2 tsf 2605809 - 2606636 + | elongation factor Ts TERM 1031 2606675 - 2606710 + F 85 -11.9 -4.1964 | gap 2, opp_overlap 2606675 GCTCACTGTGTGAAA CCCCGCGTCATACCCGG CGAT CCCGG-A-GACGCGGGG TTTTGCCGTCTTCGG TERM 1032 2606710 - 2606675 - f 75 -11.9 -3.54424 | gap 2, opp_overlap 2606675 GCTCACTGTGTGAAA CCCCGCGTCATACCCGG CGAT CCCGG-A-GACGCGGGG TTTTGCCGTCTTCGG TERM 1033 2608122 - 2608136 + G 73 -7 -4.1466 | TCTCCAGCACCATCG GCCGCG AGG CGCGCC TTTTGGAGCTTGCCT MSMEG_2521 2606795 - 2608255 + | amidase MSMEG_2522 2608371 - 2609555 + | efflux ABC transporter, permease protein MSMEG_2523 2609552 - 2610118 + | efflux ABC transporter, permease protein, putative MSMEG_2524 2610123 - 2610845 + | ABC transporter, ATP-binding protein MSMEG_2525 2610917 - 2612377 + | amino acid permease superfamily protein TERM 1034 2612395 - 2612423 + F 100 -23.9 -3.21099 | GTGACCTCGTGACGA CCCGGTCGGCCGA ACA TCGGCCGGCCGGG TTCGTCGTCACGCGG TERM 1035 2613600 - 2613590 - g 82 -3.2 -5.08601 | GCATTGGAACAAAAA CGTC TTC GACA TGGGCGAGGTGGGGA tynA 2612646 - 2614619 + | tyramine oxidase TERM 1036 2614671 - 2614639 - f 100 -23.6 -2.65442 | opp_overlap 2614639, overlap 2614641 ACAGCAGGCAGAGGA CAGGCGCGGTATCC CATGC GGATACCGCGCCTG TTTGCGTGTGTAGTT TERM 1037 2614639 - 2614671 + F 100 -23.6 -3.75193 | opp_overlap 2614639 2614641 ACAGCAGGCAGAGGA CAGGCGCGGTATCC CATGC GGATACCGCGCCTG TTTGCGTGTGTAGTT TERM 1038 2614669 - 2614641 - f 100 -20.4 -2.86728 | opp_overlap 2614639, overlap 2614639 AGCAGGCAGAGGACA GGCGCGGTATCC CATGC GGATACCGCGCC TGTTTGCGTGTGTAG MSMEG_2527 2614912 - 2615016 + | hypothetical protein MSMEG_2528 2616163 - 2615039 - | glycerate kinase MSMEG_2529 2617124 - 2616171 - | glyoxylate reductase pcaC 2617610 - 2617182 - | hypothetical protein MSMEG_2531 2618345 - 2617653 - | GntR family protein transcriptional regulator aroQ 2618774 - 2619349 + | dehydroquinase dehydratase, type II MSMEG_2533 2619436 - 2619741 + | hypothetical protein MSMEG_2534 2619738 - 2620601 + | putative carboxylesterase protein TERM 1039 2620698 - 2620722 + G 76 -7.8 -4.33785 | gap 1, overlap 2620670 2620668 2620667 TGACGGGGGGAGCCT CCGGCGTCGGG GAGG CCTG-CGTCGG TTATTTTCTGGGTCT MSMEG_2535 2620637 - 2621404 + | dehydrogenase/reductase SDR family protein member 10 MSMEG_2536 2621453 - 2622208 + | 3-oxoacyl-[acyl-carrier-protein] reductase MSMEG_2537 2622262 - 2623653 + | transporter protein MSMEG_2538 2624094 - 2623666 - | MarR-family protein transcriptional regulator TERM 1040 2623839 - 2623854 + g 82 -6 -4.72272 | overlap 2623841 AGGATGCCGCCTCGG GACGCC GGAC GGCGCC TTTTTCCTGAAGCGC MSMEG_2539 2624131 - 2624811 + | thiopurine S-methyltransferase (tpmt) superfamily protein pyrH 2624947 - 2625693 + | uridylate kinase frr 2625741 - 2626298 + | ribosome recycling factor cdsA 2626299 - 2627177 + | phosphatidate cytidylyltransferase MSMEG_2542 2628050 - 2627136 - | hypothetical protein MSMEG_2544 2628197 - 2629090 + | transcriptional regulator, LysR family protein MSMEG_2545 2629087 - 2630205 + | radical SAM enzyme, Cfr family protein TERM 1041 2630313 - 2630265 - T 71 -14.1 -2.71684 | gap 3, opp_overlap 2630292, overlap 2630264 2630307 AATCACGCACACAAG GCGA-CGTTCGAT-GCCG-GGCCT GCTC AGGCGTCGGCGATCGAACGCTCGC GGACCGCTTCGATGT MSMEG_2546 2630989 - 2630288 - | GntR family transcriptional regulator protein MSMEG_2547 2632063 - 2631062 - | transcriptional regulator MSMEG_2548 2632377 - 2633153 + | 3-oxoacyl-[acyl-carrier-protein] reductase MSMEG_2549 2633198 - 2634526 + | major facilitator superfamily protein TERM 1042 2634976 - 2634952 - g 73 -12.8 -3.53224 | CACCGTCTCCGGAAA GTGGGCGCTC GAGCG GGGCGCCCAC CGGGGCATAGGGGTG MSMEG_2550 2634530 - 2635594 + | glyoxylate reductase MSMEG_2551 2635754 - 2635629 - | hypothetical protein MSMEG_2552 2637235 - 2635751 - | aldehyde dehydrogenase (NAD) family protein TERM 1043 2636941 - 2636960 + g 71 -10 -3.73336 | gap 1, overlap 2636945 CGACCTCGGTGATGA GGATGCGCC GCA GGCGC-TCC TTGTTGCGTTCGAGT MSMEG_2553 2637849 - 2637301 - | transcriptional regulator, TetR family protein MSMEG_2554 2639031 - 2637892 - | phosphotransferase enzyme family protein TERM 1044 2638540 - 2638498 - G 70 -12 -3.28924 | gap 2, opp_overlap 2638497 2638495 2638494 CAGCCGGCCCCAGAA CGCGGCGTGCACACGGGCGA GCAGT TCGACCGTGAGC--GCCGCG CGGTCCTTGTCGAGT TERM 1045 2639078 - 2639051 - R 76 -9.9 -4.08948 | opp_overlap 2639051, overlap 2639066 2639072 CAAGTTTACAAATAA CTGCGCTTTTG TAAATG CAAACGCGCAG TGTTGGCACGCGGGA MSMEG_2555 2639781 - 2639368 - | hypothetical protein MSMEG_2556 2642041 - 2639792 - | beta-glucosidase MSMEG_2557 2642627 - 2642079 - | transcriptional regulator, TetR family protein TERM 1046 2643915 - 2643927 + G 70 -9.1 -3.86015 | CGGCGAGCCCGAACT GCTGC ACA GCAGC TTTGTCCACGGCATC MSMEG_2558 2642713 - 2643969 + | NikQ protein MSMEG_2559 2643983 - 2644174 + | hypothetical protein MSMEG_2560 2644993 - 2644175 - | hypothetical protein MSMEG_2561 2645887 - 2645003 - | gluconolactonase MSMEG_2562 2645963 - 2646667 + | hypothetical protein MSMEG_2563 2646676 - 2647914 + | cytochrome P450 superfamily protein MSMEG_2564 2647916 - 2648884 + | oxidoreductase, zinc-binding dehydrogenase family protein MSMEG_2565 2648881 - 2649663 + | 4-hydroxy-2-oxovalerate aldolase MSMEG_2566 2649687 - 2650415 + | 3-alpha-(or 20-beta)-hydroxysteroid dehydrogenase MSMEG_2567 2650397 - 2651911 + | monooxygenase MSMEG_2568 2651913 - 2652845 + | LipW protein MSMEG_2569 2653929 - 2652955 - | oxidoreductase, 2OG-Fe(II) oxygenase family protein MSMEG_2570 2655358 - 2653937 - | xanthine/uracil permease MSMEG_2571 2655727 - 2656023 + | cupin 2, barrel MSMEG_2572 2656504 - 2656031 - | hypothetical protein MSMEG_2573 2657232 - 2656525 - | hypothetical protein MSMEG_2574 2657470 - 2658036 + | hypothetical protein MSMEG_2575 2658328 - 2658074 - | hypothetical protein MSMEG_2576 2659769 - 2658411 - | deoxyribodipyrimidine photo-lyase MSMEG_2577 2659722 - 2659961 + | hypothetical protein TERM 1047 2660704 - 2660682 - g 71 -11.3 -3.61715 | GACGCTGGTCAACAA GGGCCTCGA GCTCA TCGAGACCC ACCTGCTGTTCGGCG TERM 1048 2661049 - 2661006 - g 70 -13.1 -3.28924 | gap 1, opp_overlap 2661021, overlap 2661007 2661018 CACCGCGGTCTACAA CTCGGCCAACGAGG-AGGCC GCCGA GGCCTTCCTCGACGGCCGCA TCGGCTTCCCCGACA dxr 2660026 - 2661222 + | 1-deoxy-D-xylulose 5-phosphate reductoisomerase MSMEG_2579 2661219 - 2662439 + | zinc metalloprotease ispG 2662456 - 2663622 + | 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase MSMEG_2581 2663721 - 2664533 + | acetyltransferase MSMEG_2582 2665084 - 2664545 - | hypothetical protein MSMEG_2583 2665175 - 2665783 + | putative transcriptional regulator MSMEG_2584 2665920 - 2667740 + | penicillin-binding protein, putative MSMEG_2585 2667790 - 2668377 + | hypothetical protein MSMEG_2586 2668783 - 2668397 - | hypothetical protein map 2668898 - 2669755 + | methionine aminopeptidase cobQ 2669752 - 2671242 + | cobyric acid synthase MSMEG_2589 2671656 - 2671246 - | hypothetical protein MSMEG_2590 2671766 - 2672536 + | AraC-family protein transcriptional regulator MSMEG_2591 2672585 - 2673241 + | hypothetical protein MSMEG_2592 2673315 - 2673878 + | hypothetical protein MSMEG_2593 2675709 - 2673880 - | gnat-family protein acetyltransferase TERM 1049 2673963 - 2673981 + g 74 -13.8 -3.27298 | opp_overlap 2673962 2673961, overlap 2673978 GGAAGTCGACGAACG CCGCGGCC GTG GGCTGCGG TTCGTGGTTGGCCAG asnB 2677511 - 2675706 - | asparagine synthase (glutamine-hydrolyzing) TERM 1050 2677713 - 2677728 + H 70 -4.6 -4.42653 | CGTTCGGCCTCTATT GGTAGG TTAG CCGACC TTTTGTGCGTGACAT MSMEG_2595 2677864 - 2679237 + | gamma-glutamylisopropylamide synthetase MSMEG_2596 2679224 - 2679973 + | peptidase C26 MSMEG_2597 2679970 - 2681325 + | aldehyde dehydrogenase MSMEG_2598 2681364 - 2682137 + | short chain dehydrogenase MSMEG_2599 2682163 - 2682897 + | GntR-family protein transcriptional regulator MSMEG_2600 2683643 - 2682903 - | regulatory protein pcaH 2683715 - 2684461 + | protocatechuate 3,4-dioxygenase, beta subunit pcaG 2684461 - 2685018 + | protocatechuate 3,4-dioxygenase, alpha subunit pcaB 2685015 - 2686217 + | 3-carboxy-cis,cis-muconate cycloisomerase pcaC 2686214 - 2686618 + | 4-carboxymuconolactone decarboxylase MSMEG_2605 2687430 - 2686690 - | transcriptional regulator, GntR family protein MSMEG_2606 2687544 - 2687846 + | ArsR-family protein transcriptional regulator cbiM 2687927 - 2688613 + | cobalamin biosynthesis protein CbiM MSMEG_2608 2688610 - 2688948 + | cobalt transport protein CbiM TERM 1051 2689212 - 2689249 + G 79 -14.9 -3.35679 | gap 1 TTCTGCTGCCGTTCG CCGAAGG-CGGCGAACGC GTC GAGTTCGCCGGCCTTCAG TTGTCGGTCACGGGC cbiQ 2688950 - 2689729 + | cobalt ABC transporter, permease protein CbiQ MSMEG_2610 2689726 - 2690475 + | cobalt transport protein ATP-binding subunit MSMEG_2611 2691871 - 2690486 - | mycothione/glutathione reductase MSMEG_2612 2692907 - 2691876 - | hypothetical protein mqo 2693158 - 2694690 + | malate:quinone oxidoreductase MSMEG_2614 2694704 - 2695177 + | ElaA protein TERM 1052 2696747 - 2696732 - g 72 -8.2 -4.08394 | ACACCGGCGGGAAAA CCCCGC TGGC GCAGGG ACTCCTGGCCGCCCG MSMEG_2615 2695174 - 2697057 + | chelatase TERM 1053 2697411 - 2697376 - g 74 -12.4 -3.57144 | overlap 2697378 TCGTGGACCCGCAAA CACGGCAGCGACGACG ACCA CGCCGCCGCGGCCGCC GACGGCTGGGCCGAG TERM 1054 2697409 - 2697378 - g 87 -17.2 -3.36515 | overlap 2697376 GTGGACCCGCAAACA CGGCAGCGACGACG ACCA CGCCGCCGCGGCCG CCGACGGCTGGGCCG cobO 2697091 - 2697684 + | cob(I)yrinic acid a,c-diamide adenosyltransferase cobB 2697720 - 2699096 + | cobyrinic acid a,c-diamide synthase cobA 2699162 - 2700370 + | uroporphyrin-III C-methyltransferase MSMEG_2619 2700404 - 2701951 + | efflux protein MSMEG_2620 2701968 - 2702672 + | hypothetical protein TERM 1055 2704410 - 2704446 + G 73 -16.5 -2.59431 | overlap 2704407 2704443 CACCGGCGAGACCCG CGAGATCGCGGCCGACG GCG CGGCCGCCGAGATCTCG TCCGTTCTCGCGGGC proS 2702707 - 2704464 + | prolyl-tRNA synthetase MSMEG_2622 2704958 - 2704485 - | hypothetical protein MSMEG_2623 2705503 - 2704955 - | Tat pathway signal sequence domain-containing protein MSMEG_2624 2705700 - 2706245 + | hypothetical protein nusA 2706242 - 2707273 + | transcription elongation factor NusA MSMEG_2626 2707322 - 2707672 + | hypothetical protein MSMEG_2627 2708785 - 2707937 - | hypothetical protein TERM 1056 2710313 - 2710291 - gH 78 -13.4 -3.44051 | opp_overlap 2710284 GGTGTACGAGGAGAA GGAGCTCGGC CGC GCCGAGATCC GCGCCATCTTCCGCT infB 2708747 - 2710579 + | translation initiation factor IF-2 TERM 1057 2710830 - 2710866 + G 90 -20.1 -3.14132 | opp_overlap 2710824 GCGCACCAAGGTGGG CGCCGGGACCGGGGTGA GGT TCACCCCGACCCTGGCG TTCGTCCGGGACACC rbfA 2710579 - 2711049 + | ribosome-binding factor A MSMEG_2630 2711052 - 2712074 + | DHH family protein TERM 1058 2713148 - 2713170 + G 75 -9.9 -3.97947 | gap 1 ACGAGTCGGTGCTGG CCACCATCGG GGTG CCG-TGGTGG TTTCTGGTGGCTCAA MSMEG_2631 2712067 - 2713434 + | MATE efflux family protein MSMEG_2632 2714060 - 2713440 - | SAM-dependent methyltransferase TERM 1059 2713710 - 2713767 + g 77 -17 -2.63073 | gap 2, opp_overlap 2713712, overlap 2713710 2713713 2713727 CGCCAGCGCCCACAC CACGGTGGCGGTCCCGTCGTCGACGGGG ACGT CCTCGGCGGTGCCGGGGC-GCCA-CGTG ATGTTCTTGCCGGCC MSMEG_2633 2714925 - 2714104 - | ABC transporter ATP-binding protein MSMEG_2634 2715989 - 2714946 - | hypothetical protein MSMEG_2635 2716903 - 2716010 - | ABC transporter permease protein MSMEG_2636 2718056 - 2717025 - | regulatory protein, LacI TERM 1060 2718455 - 2718435 - g 70 -8.9 -3.86897 | CGCAGCGCCGACAAA CTCGCCGAC ATG GCCGCCGAG CACGGTATCGAGCAC MSMEG_2637 2718150 - 2719415 + | oxidoreductase, Gfo/Idh/MocA family protein MSMEG_2638 2719412 - 2720602 + | hypothetical protein MSMEG_2640 2720599 - 2721432 + | 3-dehydroshikimate dehydratase MSMEG_2639 2722243 - 2721419 - | integral membrane protein MSMEG_2641 2723158 - 2722400 - | enoyl-CoA hydratase TERM 1061 2722931 - 2722948 + g 70 -9.1 -3.9392 | overlap 2722923 GGAGATGTCGGGCAA CTCGGTG GTGT CGCCGAG TTCTTTGAGATCCAG TERM 1062 2723376 - 2723344 - g 78 -13.3 -3.53811 | TCGACGTGTTCGAAA GCGCGGTGGCCGAGG TCA CCGCGACCACGACGC GGCTACTCGCGGGAC MSMEG_2642 2723196 - 2723471 + | hypothetical protein MSMEG_2643 2723468 - 2724031 + | hypothetical protein MSMEG_2644 2725727 - 2724054 - | putative hydrolase MSMEG_2645 2726348 - 2725764 - | hypothetical protein MSMEG_2646 2727722 - 2726511 - | mini-circle putative transposase for MSMEG_2647 2727996 - 2728961 + | metallophosphoesterase MSMEG_2648 2728958 - 2729623 + | Sfp-type phosphopantetheinyl transferase truB 2729620 - 2730531 + | tRNA pseudouridine synthase B MSMEG_2650 2731765 - 2730551 - | acyl-CoA dehydrogenase MSMEG_2651 2732938 - 2731781 - | alkanesulfonate monooxygenase family protein TERM 1063 2731842 - 2731807 - G 77 -14.7 -3.20723 | CGCCGACGAACGGAA TCGAGGCAGGTGCGC AGTCGA GCGCACCGGCGTCGA ACAGGCCGCGCTTGC MSMEG_2652 2733725 - 2733015 - | iron repressor protein ribF 2733807 - 2734784 + | bifunctional riboflavin kinase/FMN adenylyltransferase rpsO 2734886 - 2735155 + | 30S ribosomal protein S15 TERM 1064 2735177 - 2735209 + F 100 -16.9 -4.49958 | opp_overlap 2735179, overlap 2735180 CCTAGGTGGGAACCA CATCCGCGGCCGTCC TCG GGGCGGCCGCGGTTC TTTCTTTCGTGGGGT TERM 1065 2735207 - 2735179 - f 87 -17.3 -2.90392 | opp_overlap 2735177 2735180 TAGGTGGGAACCACA TCCGCGGCCGTCC TCG GGGCGGCCGCGGT TCTTTCTTTCGTGGG TERM 1066 2735180 - 2735206 + F 100 -23 -4.35958 | opp_overlap 2735179, overlap 2735177 AGGTGGGAACCACAT CCGCGGCCGTCC TCG GGGCGGCCGCGG TTCTTTCTTTCGTGG MSMEG_2655 2735260 - 2735667 + | LppU protein TERM 1067 2735795 - 2735819 + F 72 -13.5 -3.15544 | opp_overlap 2735786 TACGAACGTCAGGTG CGACACCCGCG ATC CGTGGGTGACG TTCCTGCGAGTCACG TERM 1068 2737014 - 2737001 - g 76 -2.3 -4.72272 | TTCGCTGACCAAAAA GCTTG TGCG CCAGC GCATCCTGACCGACC gpsI 2735997 - 2738288 + | polynucleotide phosphorylase/polyadenylase TERM 1069 2738377 - 2738333 - g 83 -15.7 -3.64866 | gap 1, opp_overlap 2738327 AGACCAGACTGGAAA CGTCGC-AGGTCCGCCGGAC CACGCT GCCCGGCGGACTTCGCGTCG TCACCGAATATCTCC TERM 1070 2738731 - 2738760 + G 74 -13.5 -3.2614 | ATCGCGATGCGCGAC GACGACCCCGAGG ACAC CCTCGGCGACGTC TTCCTCTCGGCGATG MSMEG_2657 2738311 - 2739615 + | peptidase, M16 family protein MSMEG_2658 2739634 - 2740515 + | beta-lactamase TERM 1071 2740512 - 2740563 + T 84 -14.4 -3.61398 | gap 1, opp_overlap 2740522, overlap 2740516 CGAACTCGGCGTGCA CTG-ACGAAAATCGCCCGGCCGGAA CGG TTCCGGCCGGGCGATCACGGTTCGG TTGTTACGCCAGGAA TERM 1072 2740516 - 2740558 + T 86 -16.2 -3.28745 | opp_overlap 2740522, overlap 2740512 CTCGGCGTGCACTGA CGAAAATCGCCCGGCCGGAA CGG TTCCGGCCGGGCGATCACGG TTCGGTTGTTACGCC TERM 1073 2740552 - 2740522 - T 100 -27 -4.2828 | opp_overlap 2740516 2740512 GTGCACTGACGAAAA TCGCCCGGCCGGAA CGG TTCCGGCCGGGCGA TCACGGTTCGGTTGT ald 2741682 - 2740567 - | alanine dehydrogenase MSMEG_2660 2741778 - 2742293 + | transcriptional regulator, AsnC family protein MSMEG_2661 2743065 - 2742304 - | hypothetical protein MSMEG_2662 2743220 - 2743516 + | hypothetical protein MSMEG_2663 2745449 - 2743713 - | hypothetical protein TERM 1074 2744496 - 2744525 + g 100 -13.6 -4.70626 | gap 1 GATGGACAGTTTGGT GCCGCCGGCGGTG ATCGC CACT-CCGGCGGC TTTTTCGAGTTCTTG TERM 1075 2744647 - 2744674 + g 72 -5.4 -4.51812 | overlap 2744625 2744624 GCGTCGTGGCGACGC TCGGGCGCGCCG CGCT CGTCGTGGTCGA TTTGTTGTTGTGAGG TERM 1076 2744730 - 2744747 + g 76 -2.5 -4.7497 | overlap 2744723 GTCGGTGGGGTTGCA CATGCCG GGTG CGGCCAG TTTTTCGTCGATGGG TERM 1077 2744956 - 2744966 + g 81 -2.4 -5.06414 | TCGGCCCCGATGGCG CCGG TGA CCAG TTTTTCTTCCAGCCG TERM 1078 2745554 - 2745535 - H 75 -10 -3.88946 | CACGTTACAGAAGAA CACTCACC GGTC GGTGAGCG TGCGCCGAGTGCTGA dapB 2745690 - 2746427 + | dihydrodipicolinate reductase MSMEG_2665 2746424 - 2746891 + | hypothetical protein MSMEG_2666 2746888 - 2747343 + | multimeric flavodoxin WrbA MSMEG_2668 2747354 - 2747815 + | hypothetical protein MSMEG_2667 2748729 - 2747809 - | HpcH/HpaI aldolase/citrate lyase family protein, putative MSMEG_2669 2749500 - 2748751 - | hydrolase thyA 2749543 - 2750343 + | thymidylate synthase folA 2750372 - 2750836 + | dihydrofolate reductase MSMEG_2672 2750910 - 2751554 + | acyl-CoA synthase MSMEG_2675 2751938 - 2753338 + | ISMsm8, transposase TERM 1079 2753983 - 2753950 - T 89 -18.9 -2.63596 | overlap 2753954 CCCCACTTGAGACCA TCAACGCCCACCCGC ATGT GCTGGTGGGCGCTGA TGAACTCCACGACTA TERM 1080 2753979 - 2753954 - T 86 -16.1 -3.24925 | overlap 2753950 ACTTGAGACCATCAA CGCCCACCCGC ATGT GCTGGTGGGCG CTGATGAACTCCACG MSMEG_2676 2754322 - 2753996 - | IS1137, transposase orfA MSMEG_2677 2755590 - 2754283 - | large membrane protein MSMEG_2678 2755920 - 2755771 - | hypothetical protein MSMEG_2679 2756022 - 2757218 + | hypothetical protein MSMEG_2680 2758669 - 2757263 - | amino acid transporter TERM 1081 2757910 - 2757923 + g 73 -9.5 -3.95324 | opp_overlap 2757893, overlap 2757916 GCGAGACGATCATGG CCCGG CCCG CCGGG TTCTTCTTGCCGGTC TERM 1082 2758012 - 2757981 - G 79 -5 -4.72029 | TCGAAGCCAAGAAAA CTCAGCACCGCGAT GGAC AGCGCAGCGGCGAG CAGCGGCGCGGTGAC MSMEG_2681 2759628 - 2758699 - | proline imino-peptidase MSMEG_2682 2759690 - 2760487 + | transcriptional regulator thyX 2760518 - 2761270 + | FAD-dependent thymidylate synthase dapA 2761296 - 2762198 + | dihydrodipicolinate synthase TERM 1083 2762952 - 2762985 + G 86 -18.9 -3.14564 | gap 1, opp_overlap 2762951 2762948 CGTGCAGCAGATCAT CGACGCCGCGGTGGCC CTC GGCCGCCGC-GTGTCG TTCGTCGGGCGGTCG MSMEG_2685 2762206 - 2763882 + | metallo-beta-lactamase superfamily protein MSMEG_2686 2764331 - 2763894 - | hypothetical protein MSMEG_2687 2765172 - 2764345 - | 3-ketoacyl-(acyl-carrier-protein) reductase TERM 1084 2764962 - 2764972 + g 72 -8.2 -4.09739 | overlap 2764947 GCCGCGTGACGATGC GGCC GCC GGCC TTTTCGACGAGTTCG MSMEG_2688 2765509 - 2765195 - | antibiotic biosynthesis monooxygenase domain-containing protein TERM 1085 2765711 - 2765685 - gR 71 -10.1 -3.64487 | gap 1, overlap 2765688 GGACATGGCTAACAA GACCGCCGCCCG CTCC CGGGCG-CGTTC GGAAAGCTCTTCGAG MSMEG_2689 2765871 - 2765743 - | hypothetical protein TERM 1086 2765838 - 2765791 - Gg 76 -14.1 -3.53012 | overlap 2765765 GGCGCCCGGCGGAAA CCGCCGA-CGCGCCCCGCACCGC AGCA GCGGCGC-AAGCCCGCCCGGCGG CCCCAGGCGTCGCCC MSMEG_2690 2765524 - 2768304 + | DNA translocase FtsK MSMEG_2691 2768797 - 2768315 - | N-acetylglutamate synthase pgsA 2768903 - 2769508 + | CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase MSMEG_2693 2769486 - 2769974 + | competence-damaged protein MSMEG_2694 2770097 - 2770435 + | transcriptional regulator, XRE family protein MSMEG_2695 2770675 - 2771514 + | 35 kDa protein MSMEG_2696 2771533 - 2772369 + | putative membrane alanine rich protein MSMEG_2697 2772784 - 2772377 - | hypothetical protein MSMEG_2698 2773191 - 2772781 - | hypothetical protein MSMEG_2699 2773253 - 2774425 + | hypothetical protein MSMEG_2700 2774435 - 2774629 + | hypothetical protein MSMEG_2701 2774673 - 2774876 + | hypothetical protein hypD 2776013 - 2774889 - | hydrogenase expression/formation protein HypD hypC 2776338 - 2776054 - | hydrogenase assembly chaperone HypC/HupF hypE 2778901 - 2777828 - | hydrogenase expression/formation protein HypE gmhA 2779581 - 2778898 - | phosphoheptose isomerase TERM 1087 2779401 - 2779357 - G 70 -12 -3.30124 | gap 1, overlap 2779358 2779375 GCCCAGCGTGTACAA CCGGCCGCCGCGCAG-GAACC GCTC GGCCATCTGCGCGCCGGCCGC GCGCAGCGCGTCGTC MSMEG_2707 2780315 - 2779578 - | hypothetical protein TERM 1088 2780016 - 2779977 - GH 77 -13.4 -3.3785 | CGAACCGATCCACAA CGTCGTGACGCCCCACGC GTCG GCGCGGCGCATCGCGTCG ATCACGGCCGCGTCG MSMEG_2708 2780503 - 2780312 - | hypothetical protein MSMEG_2709 2780291 - 2780443 + | hypothetical protein MSMEG_2710 2781228 - 2780500 - | hypothetical protein hypF 2783524 - 2781233 - | [NiFe] hydrogenase maturation protein HypF hypC 2783781 - 2783521 - | hydrogenase assembly chaperone HypC/HupF MSMEG_2713 2784265 - 2783783 - | peptidase M52, hydrogen uptake protein TERM 1089 2783965 - 2783910 - G 70 -12.4 -3.32844 | gap 1, overlap 2783914 CTGCCCACCTCACAA CCGATCACGACCGTGGGCG-GCACGGC GCC GCCGAGGGCGCGCACGGTCGCGAACAC GGCCGCGGGATCCAT TERM 1090 2783961 - 2783914 - G 79 -18.4 -2.60079 | gap 1, overlap 2783910 CCACCTCACAACCGA TCACGACCGTGGGCG-GCACGGC GCC GCCGAGGGCGCGCACGGTCGCGA ACACGGCCGCGGGAT MSMEG_2714 2784388 - 2784269 - | hypothetical protein MSMEG_2715 2785739 - 2784414 - | hypothetical protein MSMEG_2716 2786392 - 2785736 - | hypothetical protein TERM 1091 2786007 - 2785975 - G 74 -15 -3.01924 | gap 1 CACCGCGGGTGAACA CGGTGCCGCTG-AAC AGGA ATTGCAGCGGCACCG TGCCCTCCCGCAGAG MSMEG_2717 2786949 - 2786389 - | hypothetical protein MSMEG_2718 2787960 - 2787037 - | iron-sulfur cluster-binding protein, Rieske family protein, putative MSMEG_2719 2789760 - 2787964 - | hydrogen:quinone oxidoreductase TERM 1092 2789025 - 2789047 + g 71 -9.8 -3.7282 | opp_overlap 2789025 AGAAGAAGTCGAAGA GGTCGTCGTG CAT CGGGACGACC TTCTTCATGAACTCG MSMEG_2720 2790918 - 2789863 - | NADH ubiquinone oxidoreductase, 20 kDa subunit hypB 2791807 - 2791028 - | hydrogenase accessory protein HypB hypA 2792138 - 2791809 - | hydrogenase nickel insertion protein HypA TERM 1093 2792212 - 2792202 - H 72 -8.2 -4.07568 | overlap 2792203 CCGTCCGGCGCAAAA CCGC GAT GCGG GTCCGGACAGCTCGG TERM 1094 2792413 - 2792392 - gH 73 -7.2 -4.13014 | CCCAGATCGCGAAAA GGCCCTCG AACTGG CGATGGCC CAGATCGACAAGAAT recA 2792363 - 2793412 + | protein RecA recX 2793381 - 2793947 + | recombination regulator RecX MSMEG_2725 2794904 - 2794005 - | glutamate transporter permease protein GluD MSMEG_2726 2795581 - 2794901 - | glutamate permease MSMEG_2727 2796421 - 2795600 - | glutamate binding protein TERM 1095 2795944 - 2795978 + g 73 -7.1 -4.13244 | gap 2 ACTCATCCTTGATCC GCTGGGC-CGGCGT-GG AAC CCGACACCGAGCACAGC TTCTTGTTGTTCTCC MSMEG_2728 2797232 - 2796447 - | glutamate transport ATP-binding protein GluA miaB 2797337 - 2798875 + | tRNA-I(6)A37 thiotransferase enzyme MiaB TERM 1096 2799010 - 2799044 + T 71 -10.7 -3.58522 | overlap 2798955 2799011 TTCGTGCTGCTGGGT TCGTTCCTGCTGCCG CACAC CGGCAGCAGCAAGGG TTTCGACGTGCTGGT MSMEG_2731 2800879 - 2799515 - | ATPase involved in DNA repair TERM 1097 2800348 - 2800394 + g 74 -13.4 -3.29144 | overlap 2800351 CGGCCAGCGCCTCTT TGCGCGCGGTCTGCGCGGCGCG GTA CTCGTCGCGCTGCGCGCGCTCG TTCTGGGCGGCCTCG TERM 1098 2800351 - 2800391 + g 75 -15.9 -2.82623 | overlap 2800348 CCAGCGCCTCTTTGC GCGCGGTCTGCGCGGCGCG GTA CTCGTCGCGCTGCGCGCGC TCGTTCTGGGCGGCC MSMEG_2732 2801006 - 2801893 + | hypothetical protein MSMEG_2733 2801903 - 2802589 + | hypothetical protein miaA 2802586 - 2803494 + | tRNA delta(2)-isopentenylpyrophosphate transferase dapF 2803499 - 2804374 + | diaminopimelate epimerase MSMEG_2736 2804420 - 2805832 + | GTP-binding protein TERM 1099 2805856 - 2805910 + T 77 -11.8 -3.68222 | CTCGTCAGGAGGTCA GGCCGCGTCCTTCGCGTCGGACGCCG CCT TGGTGTCCTTCGCGTCGGTGGTGGCC TTCTTCGGGTTCGAG MSMEG_2737 2807556 - 2805853 - | PPE family protein MSMEG_2738 2809933 - 2807642 - | biotin sulfoxide reductase TERM 1100 2809922 - 2809897 - G 70 -3.2 -4.4009 | gap 1, overlap 2809898 2809899 TCTCAGCGGAGAAAA CCCCCCAATGC GTGAG GC-TCGTGGGG GAGTGCGGCATACCG MSMEG_2739 2810192 - 2812627 + | hypothetical protein lexA 2813368 - 2812637 - | LexA repressor TERM 1101 2813271 - 2813325 + g 78 -12 -3.68529 | gap 1 GTGCGCTGACGTTCT GTGAGGCCGTTGTCGACGGCG-CGG CGCCGA CCGGCGCCGTCCGCATCGGCCGGGC TTTCGGTACTGCCGT MSMEG_2741 2813453 - 2813581 + | hypothetical protein MSMEG_2742 2813632 - 2814189 + | DNA-damage-inducible protein nrdR 2814351 - 2814803 + | transcriptional regulator NrdR MSMEG_2744 2815511 - 2814822 - | thymidylate synthase TERM 1102 2816480 - 2816450 - R 72 -13.2 -3.14344 | overlap 2816452 2816455 GATCCCGTGGATCAA CAGGATCGCCGGGC CGG ACCCGGCGATGCGG AACGCCCGCCGGTAG TERM 1103 2816478 - 2816452 - R 76 -14.4 -3.13403 | overlap 2816450 2816455 TCCCGTGGATCAACA GGATCGCCGGGC CGG ACCCGGCGATGC GGAACGCCCGCCGGT TERM 1104 2816475 - 2816455 - R 75 -14.7 -2.77523 | overlap 2816452 2816450 CGTGGATCAACAGGA TCGCCGGGC CGG ACCCGGCGA TGCGGAACGCCCGCC MSMEG_2746 2817632 - 2816586 - | hypothetical protein sthA 2820086 - 2818671 - | soluble pyridine nucleotide transhydrogenase MSMEG_2749 2820136 - 2821314 + | hypothetical protein MSMEG_2750 2822036 - 2821344 - | iron-dependent repressor IdeR MSMEG_2751 2822265 - 2822116 - | hypothetical protein TERM 1105 2822180 - 2822229 + g 100 -18.8 -4.00124 | gap 3, opp_overlap 2822191, overlap 2822188 TGCTGCGACGCCGGT GCGAACA-C-GAATGTGCCCGCCGC GTC GCGGCGGGCACATCCTGATGT-CGC TTTCGTTGTCGCATC TERM 1106 2822188 - 2822220 + g 95 -23.5 -2.68799 | opp_overlap 2822191, overlap 2822180 CGCCGGTGCGAACAC GAATGTGCCCGCCGC GTC GCGGCGGGCACATCC TGATGTCGCTTTCGT TERM 1107 2822217 - 2822191 - G 100 -23.8 -3.36273 | opp_overlap 2822188 2822180 CGGTGCGAACACGAA TGTGCCCGCCGC GTC GCGGCGGGCACA TCCTGATGTCGCTTT MSMEG_2752 2823224 - 2822265 - | RNA polymerase sigma factor SigB MSMEG_2753 2823800 - 2823372 - | hypothetical protein MSMEG_2754 2823878 - 2824114 + | hypothetical protein MSMEG_2755 2825110 - 2824118 - | hypothetical protein MSMEG_2756 2825374 - 2825183 - | hypothetical protein MSMEG_2757 2825532 - 2825897 + | glutathione S-transferase domain-containing protein TERM 1108 2826211 - 2826176 - g 91 -21.2 -3.06696 | opp_overlap 2826180 2826186 CGCGCCGCGAACACA CCGACGGCGGACCGGA GATG TCCGGTCCGCCGTCAT CTCAGGAGTTCTTCT TERM 1109 2826180 - 2826207 + G 86 -22.8 -2.62933 | opp_overlap 2826176, overlap 2826186 CCGCGAACACACCGA CGGCGGACCGGA GATG TCCGGTCCGCCG TCATCTCAGGAGTTC MSMEG_2759 2826103 - 2826228 + | hypothetical protein MSMEG_2758 2827625 - 2826225 - | RNA polymerase sigma factor TERM 1110 2827242 - 2827298 + g 79 -11.4 -4.00445 | gap 1, overlap 2827231 CTTCTCGGACGGCTC GTCGATGTCGTCGTCGGCGGCCTTCGC GGTC GCGACGGCGGGCGTCG-CGGCATCAGC TTCTTCTTCCTCGTC MSMEG_2760 2828639 - 2827821 - | polyphosphate glucokinase MSMEG_2762 2828808 - 2829659 + | inositol-1-monophosphatase MSMEG_2761 2830283 - 2829633 - | putative secreted alanine rich protein MSMEG_2763 2830449 - 2830751 + | hypothetical protein MSMEG_2764 2831251 - 2830772 - | alanine rich transmembrane protein dut 2831277 - 2831741 + | deoxyuridine 5'-triphosphate nucleotidohydrolase MSMEG_2766 2831738 - 2832532 + | hypothetical protein MSMEG_2767 2833276 - 2832575 - | hypothetical protein MSMEG_2768 2833409 - 2833780 + | OB-fold nucleic acid binding domain-containing protein MSMEG_2770 2833777 - 2834520 + | integral membrane alanine and leucine rich protein MSMEG_2769 2835185 - 2834517 - | TrkB protein MSMEG_2771 2835897 - 2835223 - | TrkA protein TERM 1111 2837597 - 2837576 - g 71 -10.1 -3.72893 | CACCTGCCCACCAAA CGCGCGC TGGCCTAC GCGCGCG CGACGCGTCCCGACG MSMEG_2772 2836004 - 2837998 + | amino acid permease MSMEG_2773 2837995 - 2839188 + | RNA methyltransferase MSMEG_2774 2840276 - 2839197 - | diguanylate cyclase TERM 1112 2840365 - 2840379 + H 79 -10 -4.19177 | opp_overlap 2840365 ATTCCCGGCAACCGA TTCCGC AGC GCGGAA TTTATGTTGACGGAT nhaA 2840636 - 2841931 + | Na+/H+ antiporter NhaA dxs 2841956 - 2843872 + | 1-deoxy-D-xylulose-5-phosphate synthase MSMEG_2777 2843910 - 2844824 + | alpha/beta hydrolase fold MSMEG_2778 2846099 - 2844852 - | ribonuclease D MSMEG_2779 2846683 - 2846102 - | hypothetical protein hemE 2846805 - 2847866 + | uroporphyrinogen decarboxylase hemG 2847863 - 2849224 + | protoporphyrinogen oxidase MSMEG_2782 2849229 - 2849924 + | hypothetical protein TERM 1113 2849945 - 2849977 + F 72 -6.9 -4.30576 | GGGTTTTCGGGCATC CGTCCGTCATCATGG TGG CCGTGAAGACACACG TTTTGCTCGTCGCGG MSMEG_2783 2849980 - 2850276 + | hypothetical protein msrB 2850737 - 2850324 - | methionine-R-sulfoxide reductase MSMEG_2785 2852081 - 2850789 - | putative integral membrane protein TERM 1114 2851451 - 2851431 - G 70 -12.6 -3.30441 | GATCAGTGTGTAGAA CTGCCGGT TGAGT ACCGGCAG CAGCAGAAGTGGCGC MSMEG_2786 2853692 - 2852103 - | hydrolase, alpha/beta fold family protein MSMEG_2787 2854494 - 2853712 - | hypothetical protein TERM 1115 2855555 - 2855509 - g 80 -18.2 -2.93073 | gap 3, overlap 2855506 GTTCCGCAAGAAGTA CCTGCG-CGCGAC-GTCA-CGCC TGCT GGCGCTGACCGCCGCGGCGCAGG AGAAGGCCTGAGTCA MSMEG_2788 2854529 - 2855566 + | ATP/GTP-binding integral membrane protein MSMEG_2789 2856098 - 2855568 - | acetyltransferase, GNAT family protein MSMEG_2790 2856627 - 2856103 - | hypothetical protein MSMEG_2791 2857100 - 2856675 - | pyridoxamine 5'-phosphate oxidase family protein MSMEG_2792 2857877 - 2857143 - | Clp amino terminal domain-containing protein MSMEG_2793 2857979 - 2859376 + | sensor-type histidine kinase PrrB MSMEG_2794 2860042 - 2859380 - | transcriptional regulator, GntR family protein MSMEG_2795 2860101 - 2861342 + | transmembrane transport protein MSMEG_2796 2861362 - 2862573 + | integral membrane protein MSMEG_2797 2863511 - 2862579 - | LysR-family protein transcriptional regulator TERM 1116 2863705 - 2863728 + H 84 -13.2 -3.78775 | gap 1, opp_overlap 2863709 CCACCCGGAGCCCAA GGCAGCTGACC ATC GGTC-GCTGCC TTTCGTCGTAAAAGG MSMEG_2799 2863788 - 2864840 + | phospho-2-dehydro-3-deoxyheptonate aldolase MSMEG_2798 2865649 - 2864837 - | hypothetical protein TERM 1117 2865563 - 2865577 + g 81 -4.2 -4.84527 | overlap 2865554 TCCGAACGGCAGCGT GGTGAT GCG GTCGCC TTTTTCGTGTGTCGA TERM 1118 2865865 - 2865842 - R 81 -13.2 -3.56092 | opp_overlap 2865842 2865841 GGATCACTTCCGAAA GGCGATACCG TATG CGATATCGCC CTTTCGCCCTTCGTG MSMEG_2800 2866366 - 2865884 - | NADPH-dependent FMN reductase MSMEG_2801 2866445 - 2866564 + | hypothetical protein MSMEG_2802 2867294 - 2867707 + | hypothetical protein MSMEG_2803 2867745 - 2867888 + | hypothetical protein MSMEG_2804 2868002 - 2869096 + | two-component system sensor kinase MSMEG_2805 2870340 - 2869279 - | ISMsm5, transposase MSMEG_2806 2869035 - 2869382 + | two-component system response regulator MSMEG_2807 2870371 - 2870862 + | two-component system response regulator MSMEG_2808 2871045 - 2871920 + | short-chain dehydrogenase/reductase SDR MSMEG_2809 2871947 - 2872393 + | hypothetical protein MSMEG_2810 2872390 - 2873601 + | major facilitator superfamily protein MSMEG_2811 2874541 - 2873675 - | hydride transferase 1 MSMEG_2812 2875436 - 2874564 - | C-5 sterol desaturase MSMEG_2813 2875590 - 2876747 + | sensor kinase TERM 1119 2877036 - 2877048 + F 79 -6.9 -4.46926 | CCAGTGCCCTGCAAG CCGGG GCG TCCGG TTTTCTGCTCAAGTC TERM 1120 2879834 - 2879823 - f 76 -5.8 -4.54727 | overlap 2879825 CTCTGGAAATCAAAA TGGC TGGG GCCA AGCTGGCGAATTTCC MSMEG_2817 2880208 - 2880504 + | ABC efflux pump, fused inner membrane and ATPase subunits MSMEG_2818 2881502 - 2880573 - | ISMsm1, transposase orfB MSMEG_2819 2881834 - 2881499 - | ISMsm1, transposase orfA TERM 1121 2881968 - 2881979 + H 75 -3.6 -4.74801 | overlap 2881958 GTGCCCGGGTCTCCT CGTC TGTC GGCG TTTTTCGTGCAGTTG TERM 1122 2883543 - 2883566 + G 70 -8.9 -3.91144 | gap 1 ACTATTCAGCGCGTT TCGCCGTCGG GGCAG CCGA-GGCGA TTTCTCGAATCTGCG MSMEG_2820 2882879 - 2884048 + | hypothetical protein MSMEG_2824 2885869 - 2887335 + | IS1549, transposase MSMEG_2826 2890171 - 2888948 - | hypothetical protein MSMEG_2827 2890698 - 2890162 - | hypothetical protein MSMEG_2828 2890417 - 2891739 + | IS1096, tnpA protein MSMEG_2829 2892448 - 2891747 - | IS1096, tnpR protein MSMEG_2830 2893989 - 2892622 - | ISMsm4, transposase TERM 1123 2894118 - 2894081 - R 77 -12.8 -3.36273 | opp_overlap 2894088, overlap 2894088 CCTGTTTAACACCAA CAAAAAAGGGTGCCCG TATGAT CGGACACCCTTTTCAG ATGTGGGGCTTCGAC TERM 1124 2894111 - 2894088 - R 100 -11.7 -5.54885 | opp_overlap 2894088, overlap 2894081 AACACCAACAAAAAA GGGTGCCCG TATGAT CGGACACCC TTTTCAGATGTGGGG TERM 1125 2894088 - 2894111 + r 76 -9.5 -4.16943 | opp_overlap 2894081 2894088 AACACCAACAAAAAA GGGTGCCCG TATGAT CGGACACCC TTTTCAGATGTGGGG MSMEG_2831 2894352 - 2894143 - | hypothetical protein MSMEG_2832 2894974 - 2894648 - | hypothetical protein TERM 1126 2896025 - 2896013 - H 73 -9.1 -3.86897 | GGTAGGCCCGAGAAA GCGTG GTA CACGC GACAGGGCAGGAGCA TERM 1127 2897404 - 2897431 + G 78 -12 -3.75024 | gap 1, overlap 2897406 TGAGCTGGGCCGCAT CCGCCGGATCCTG TCG CAGGA-CCGGCTG TTCTTGGTGGTGCAG TERM 1128 2897406 - 2897429 + G 76 -13.2 -3.45742 | gap 1, overlap 2897404 AGCTGGGCCGCATCC GCCGGATCCTG TCG CAGGA-CCGGC TGTTCTTGGTGGTGC TERM 1129 2897735 - 2897702 - g 71 -11.8 -3.54424 | gap 2 TTCGAGGCGTGGAAA CGGTGCAG-CGC-CGG GCGA CCGTGCGACTACACCG GGCTGTCCTACGAGA TERM 1130 2897795 - 2897833 + G 71 -10.8 -3.61398 | CCCTGCAACGCTGAG CATCCCGACGGCGTTGAG CGT CTGTACGCCGGCGGGGAG TTCTTCGCCGCACCG MSMEG_2837 2896046 - 2898433 + | nitrate reductase NarB TERM 1131 2898702 - 2898684 - g 85 -11 -4.28548 | ATGGATCCAGGAAAA GCTCAGCG ATG CGCTGAAC ACGAGGCCGGAGCCC MSMEG_2838 2898445 - 2898927 + | hypothetical protein MSMEG_2839 2899010 - 2901400 + | transcriptional accessory protein MSMEG_2840 2902102 - 2901404 - | hypothetical protein MSMEG_2841 2903578 - 2902133 - | putative monooxygenase ssuD 2904917 - 2903622 - | nitrilotriacetate monooxygenase component A ssuD 2906269 - 2904914 - | nitrilotriacetate monooxygenase component A MSMEG_2844 2907879 - 2906266 - | ABC transporter, ATP-binding protein MSMEG_2845 2908766 - 2907894 - | ABC transporter permease protein TERM 1132 2908223 - 2908197 - G 74 -14.4 -3.25823 | CTCGCCGGAGAGGAA CGCGGCCTCGAC GTA GTCGAGGGCACG CACCCGCATCACCTC MSMEG_2846 2909731 - 2908763 - | ABC transporter permease protein MSMEG_2847 2911320 - 2909734 - | extracellular solute-binding protein, family protein 5 MSMEG_2848 2912946 - 2911537 - | transmembrane efflux protein TERM 1133 2912638 - 2912593 - G 83 -12.5 -3.96148 | opp_overlap 2912594, overlap 2912594 GGCCGGCATGAGAAA CGCCGCGGCGATCCCGGTG ATCACCCG CACCGTGATCACCGTGGCT CCGTTGGGCGCGACA TERM 1134 2912637 - 2912594 - G 78 -16 -2.97475 | opp_overlap 2912594, overlap 2912593 GCCGGCATGAGAAAC GCCGCGGCGATCCCGGTG ATCACCCG CACCGTGATCACCGTGGC TCCGTTGGGCGCGAC TERM 1135 2912594 - 2912637 + g 73 -16 -2.52464 | opp_overlap 2912594 2912593 GCCGGCATGAGAAAC GCCGCGGCGATCCCGGTG ATCACCCG CACCGTGATCACCGTGGC TCCGTTGGGCGCGAC MSMEG_2849 2913021 - 2913422 + | transcriptional regulatory protein MSMEG_2850 2913508 - 2913930 + | cell entry (mce) related family protein MSMEG_2851 2914399 - 2913944 - | hypothetical protein MSMEG_2852 2915304 - 2914474 - | 3-oxoacyl-[acyl-carrier-protein] reductase MSMEG_2853 2915518 - 2916330 + | hypothetical protein MSMEG_2854 2916342 - 2917187 + | hypothetical protein TERM 1136 2918093 - 2918128 + G 72 -13.2 -3.21099 | gap 1 GGCGGCGCGGTCCAA CTCGCCAAGGCGCCGGG CAG TCCGGTGCCC-GGCGGG TTGCTGCTGCAGACC MSMEG_2855 2917214 - 2918401 + | virulence factor Mce family protein MSMEG_2856 2918398 - 2919429 + | virulence factor Mce family protein MSMEG_2857 2919429 - 2920505 + | virulence factor Mce family protein MSMEG_2858 2920508 - 2921965 + | virulence factor mce family protein TERM 1137 2922591 - 2922567 - g 74 -14.3 -3.38178 | overlap 2922559 CAATCAACGCGACAA CATCGTCGCGA CCA TCGCGGCGATG AACCGTGTGGCAGGC MSMEG_2859 2921962 - 2923152 + | virulence factor Mce family protein MSMEG_2860 2923152 - 2924639 + | virulence factor mce family protein TERM 1138 2924664 - 2924615 - T 74 -13 -3.28712 | gap 2, opp_overlap 2924615 GCCGGGCGCGCAGAA CTGG-GAAGACCTGCTCC-CCAGG TGAT CCCGGTGGATCAGGTCTTGACCAG TTTGAACGGCATCGT MSMEG_2861 2925162 - 2924650 - | hypothetical protein MSMEG_2862 2925290 - 2925682 + | hypothetical protein MSMEG_2863 2925664 - 2926083 + | hypothetical protein TERM 1139 2926385 - 2926443 + G 78 -10.2 -4.13945 | gap 3 CGCGAACGCGCGTCA CGGCTGCGGCAGCAGGCGGGTGCCGCGGC AGCC GACCCGGCACCCGATCG-T-CCGC-GCCG TTTTCGGGTGGGCCT TERM 1140 2926655 - 2926645 - g 70 -8.2 -3.8512 | GATCGACCACAACAA CGCC GAC GGCG ATGTGCAACGCATCA MSMEG_2864 2926271 - 2926948 + | hypothetical protein MSMEG_2865 2926945 - 2927517 + | hypothetical protein MSMEG_2866 2928129 - 2927518 - | thioesterase family protein MSMEG_2867 2929694 - 2928126 - | 3-ketosteroid-delta-1-dehydrogenase MSMEG_2868 2929813 - 2930508 + | transcriptional regulator, PadR family protein MSMEG_2869 2932197 - 2930521 - | 3-ketosteroid-delta-1-dehydrogenase TERM 1141 2931946 - 2931922 - G 72 -14.2 -3.18264 | GCCGTGATCCAGGAA CGCCCCGGCC CGGTC GGCCGGTGCG GCATCGGCGACGAGG MSMEG_2870 2932334 - 2933494 + | oxygenase KshA MSMEG_2871 2933491 - 2933769 + | hypothetical protein TERM 1142 2933902 - 2933870 - g 72 -13.4 -3.15544 | GTCGACCTCGACGAA GCGGGCCTCGC-CGGC ACG GCCGAGCGCG-CCCGC GGCACCGGGGCGAGG MSMEG_2872 2933753 - 2934544 + | short-chain dehydrogenase/reductase SDR TERM 1143 2935853 - 2935819 - g 73 -12 -3.44051 | overlap 2935803 2935820 CGTCGACGAGTACAA CCGTGGAATCGCCGGC GGG GCAGGCGATCCCGCGC ACAAAGATCCGTCGC MSMEG_2873 2934557 - 2936146 + | hypothetical protein TERM 1144 2936159 - 2936201 + T 100 -26.5 -2.91582 | gap 1, opp_overlap 2936150 2936161, overlap 2936161 TAGGAATCCCGCCAA CAGTTCGGCCCCGG-CTTCC TCTC GGAAGACCGGGGCCGGACTG TGTGTGGCTCAGCTG TERM 1145 2936199 - 2936161 - T 100 -21.1 -3.03159 | gap 1, opp_overlap 2936159 2936161, overlap 2936150 GGAATCCCGCCAACA GTTCGGCCCCGG-CTTCC TCTC GGAAGACCGGGGCCGGAC TGTGTGTGGCTCAGC TERM 1146 2936161 - 2936199 + T 100 -23.3 -3.0094 | gap 1, opp_overlap 2936161 2936150, overlap 2936159 GGAATCCCGCCAACA GTTCGGCCCCGG-CTTCC TCTC GGAAGACCGGGGCCGGAC TGTGTGTGGCTCAGC MSMEG_2874 2937286 - 2936210 - | hypothetical protein MSMEG_2875 2938373 - 2937393 - | esterase MSMEG_2876 2939260 - 2938382 - | oxidoreductase, short chain dehydrogenase/reductase family protein MSMEG_2877 2939754 - 2939257 - | hypothetical protein MSMEG_2878 2940826 - 2939825 - | putative acyl-CoA dehydrogenase MSMEG_2879 2941974 - 2940823 - | acyl-CoA dehydrogenase MSMEG_2880 2942756 - 2941974 - | enoyl-CoA hydratase MSMEG_2881 2944206 - 2942785 - | aldehyde dehydrogenase MSMEG_2882 2945340 - 2944225 - | 5-exo-alcohol dehydrogenase MSMEG_2883 2946994 - 2945429 - | acyl-CoA synthetase TERM 1147 2945656 - 2945702 + g 78 -16.4 -3.04144 | opp_overlap 2945665 ACGTCGGATGCGGCA GGCCGAAGACCGCCACCTCCTC CAC GGCGGGGTGGCGGTAGACGGCC TCTTCCACCTCGCGG MSMEG_2884 2947132 - 2949054 + | cyclohexanone monooxygenase MSMEG_2885 2949051 - 2949938 + | short-chain dehydrogenase/reductase SDR MSMEG_2886 2950560 - 2949940 - | stress responsive A/B barrel domain family protein MSMEG_2887 2950952 - 2950566 - | hypothetical protein MSMEG_2888 2953147 - 2952197 - | lipase MSMEG_2889 2951016 - 2952254 + | NADH:flavin oxidoreductase/NADH oxidase MSMEG_2890 2954040 - 2953144 - | putative transcriptional regulator TERM 1148 2954181 - 2954148 - R 100 -24.7 -2.62184 | overlap 2954150 CGTTGTGTCATACGA CAGGCGCCCCCGAAC CGAG GTTCAGGGGCGCCTG TGAACGTGTGGACAG TERM 1149 2954179 - 2954150 - R 100 -21.5 -2.85351 | overlap 2954148 TTGTGTCATACGACA GGCGCCCCCGAAC CGAG GTTCAGGGGCGCC TGTGAACGTGTGGAC MSMEG_2891 2955126 - 2954224 - | biphenyl-2,3-diol 1,2-dioxygenase 1 MSMEG_2892 2956324 - 2955143 - | pigment production hydroxylase TERM 1150 2955656 - 2955695 + g 77 -15 -3.16881 | gap 1 CAGGTACAGCGGTTC GGTCAT-GCCGGCCTCGCG CTG CGCGGTGCCGTCCATGACC TTCATGCCGTCCATG MSMEG_2893 2957439 - 2956384 - | oxidoreductase, NAD/FAD-binding MSMEG_2894 2957572 - 2959194 + | steroid monooxygenase MSMEG_2895 2959295 - 2960089 + | short chain oxidoreductase TERM 1151 2960509 - 2960495 - g 70 -12.8 -3.28712 | CGCGCCCTGGGAGAA GCGCGG TGC CCGCGC CGACGACGCCATCCG MSMEG_2896 2960097 - 2960960 + | hypothetical protein MSMEG_2897 2961061 - 2961381 + | hypothetical protein MSMEG_2898 2961476 - 2962030 + | transcriptional regulator, TetR family protein TERM 1152 2962368 - 2962341 - g 71 -10.6 -3.75629 | GAGCGGCAACCGAAA TCGCCGACGATG TGGC CATCGTCGTCAA CAACGCGGGCACCAA MSMEG_2899 2962139 - 2962834 + | short chain dehydrogenase MSMEG_2901 2962927 - 2963490 + | hypothetical protein MSMEG_2900 2964347 - 2963487 - | 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase MSMEG_2902 2964456 - 2965199 + | hydrolase, putative MSMEG_2904 2967447 - 2967055 - | MmcI protein TERM 1153 2967568 - 2967558 - H 86 -6.8 -4.88736 | CAGGATTCAGAAAAA CACG TGT CGTG TGCGCGAGTCGGGAT MSMEG_2905 2967713 - 2968099 + | transcriptional regulator MSMEG_2906 2968218 - 2969042 + | hypothetical protein MSMEG_2907 2970517 - 2969066 - | oxidoreductase YeiQ TERM 1154 2969390 - 2969400 + g 72 -6.8 -4.37092 | overlap 2969387 CACCGTGCGGAGCAG TCGG GGA CCGA TTTTCTGGGACCCGT MSMEG_2908 2971437 - 2970514 - | 2-keto-3-deoxy-gluconate kinase MSMEG_2909 2972642 - 2971434 - | starvation-sensing protein RspA TERM 1155 2973028 - 2973079 + G 72 -3.7 -4.59773 | gap 3, overlap 2973016 TCGCGCCGCGATCGC GGAGTTG-CGTGCGCTGATCGCGGCG CAG CGC-GAGACCACCG-ACGTCAACACC TTTTTCGAACTCGAC MSMEG_2910 2972708 - 2973415 + | transcriptional regulator, GntR family protein TERM 1156 2973644 - 2973668 + G 78 -16.5 -3.07947 | opp_overlap 2973608, overlap 2973636 CAGGACCGTCCTCGC CTCGGTGATCG GCA CGATCGCCGAG TATTACGACTTCTTC TERM 1157 2974890 - 2974861 - g 73 -9.9 -3.89346 | gap 1, overlap 2974862 TGCGGATGCCAGAAA CCGCGGTGCGCCCC CGT GGGG-GCACCGAGT ACGCCGACTGGTCGA MSMEG_2911 2973561 - 2974910 + | integral membrane transport protein MSMEG_2912 2974935 - 2976311 + | inner membrane metabolite transport protein YdfJ MSMEG_2914 2976308 - 2977282 + | L-idonate 5-dehydrogenase MSMEG_2913 2978126 - 2977263 - | hydrolase MSMEG_2915 2979652 - 2978144 - | sensor histidine kinase MSMEG_2916 2980419 - 2979652 - | DNA-binding response regulator, PhoP family protein MSMEG_2917 2981214 - 2980507 - | hypothetical protein MSMEG_2918 2982106 - 2981309 - | short-chain dehydrogenase/reductase SDR MSMEG_2919 2983193 - 2982192 - | 2-dehydropantoate 2-reductase MSMEG_2920 2983601 - 2984632 + | aldo/keto reductase TERM 1158 2985213 - 2985199 - g 78 -12.8 -3.73072 | overlap 2985187 AATGCGGGCATCAAA CCGCGG CTG CCGCGG GAGGCCGTGCTGCAC MSMEG_2921 2984629 - 2985426 + | NADPH-flavin oxidoreductase MSMEG_2922 2986239 - 2985445 - | hypothetical protein MSMEG_2923 2986362 - 2987162 + | dehydrogenase/reductase SDR family protein member 1 MSMEG_2924 2988118 - 2987165 - | permease binding-protein component MSMEG_2925 2988897 - 2988115 - | permease membrane component MSMEG_2926 2990078 - 2988894 - | glycine betaine/carnitine/choline transport ATP-binding protein opuCA MSMEG_2927 2990718 - 2990071 - | ABC transporter, permease protein OpuCB MSMEG_2928 2990857 - 2991939 + | hypothetical protein MSMEG_2929 2992021 - 2992650 + | thioesterase family protein MSMEG_2930 2992647 - 2993078 + | hypothetical protein thrS 2993163 - 2995217 + | threonyl-tRNA synthetase MSMEG_2932 2995226 - 2995843 + | HIT family protein hydrolase MSMEG_2933 2995840 - 2996508 + | phosphatidylinositol synthase MSMEG_2934 2996505 - 2997419 + | lipid A biosynthesis lauroyl acyltransferase MSMEG_2935 2997421 - 2998581 + | phosphatidylinositol alpha-mannosyltransferase TERM 1159 2999261 - 2999247 - g 77 -11.4 -3.85698 | GGTGCGGTGCAGAAA GGCGAG GAC CTCGCC GAGACCGCGGCGCGC MSMEG_2936 2998581 - 2999636 + | hydrolase, nudix family protein MSMEG_2937 2999713 - 3000624 + | pyridoxine biosynthesis protein tesB 3000634 - 3001485 + | acyl-CoA thioesterase II MSMEG_2939 3001482 - 3002063 + | glutamine amidotransferase subunit PdxT TERM 1160 3002079 - 3002125 + F 71 -10 -3.56643 | opp_overlap 3002080 3002089, overlap 3002080 TTCTTCGTGTCGAGA ACGACGAAAACGTCGTCTGGAG CGC CTCGCGGCGACGATTGCGTCGG TTTCGGCGGTGTCCG TERM 1161 3002115 - 3002089 - f 75 -6.4 -4.37527 | opp_overlap 3002080 3002079, overlap 3002080 CGAGAACGACGAAAA CGTCGTCTGGAG CGC CTCGCGGCGACG ATTGCGTCGGTTTCG TERM 1162 3002979 - 3002924 - g 74 -15.4 -3.02144 | overlap 3002926 CGACGCGCTCGAAGA CAGCGACGACGTCCAGGACGTCTACA CCAA CATGGACATCCCCGACGACGTCGCCG CCCAGCTCGACGAGG MSMEG_2940 3002244 - 3002999 + | hypothetical protein MSMEG_2941 3003653 - 3003003 - | NAD dependent epimerase/dehydratase family protein MSMEG_2942 3004109 - 3003678 - | glyoxalase/bleomycin resistance protein/dioxygenase superfamily protein ruvC 3004295 - 3004852 + | Holliday junction resolvase ruvA 3004849 - 3005436 + | Holliday junction DNA helicase motor protein ruvB 3005439 - 3006494 + | Holliday junction DNA helicase B MSMEG_2946 3006499 - 3006885 + | transmembrane protein MSMEG_2947 3007026 - 3007814 + | polyketide cyclase MSMEG_2948 3007814 - 3008629 + | 6-oxocamphor hydrolase TERM 1163 3010389 - 3010348 - g 77 -10.7 -3.87373 | gap 1, overlap 3010351 GACATGGCCGACAAA CTACGGCGCACGGCCGCGGC GAC GCTG-GGCTGCGCGCCGCAC GAGGTCACACTCGCC TERM 1164 3010386 - 3010351 - g 74 -14.6 -3.01125 | gap 1, overlap 3010348 ATGGCCGACAAACTA CGGCGCACGGCCGCGGC GAC GCTG-GGCTGCGCGCCG CACGAGGTCACACTC TERM 1165 3010861 - 3010829 - g 70 -15.5 -2.82516 | TCCGCCACCACGAGA CCCCGGCGCCCCACA CCC TGCTGGGCGCCAAGG GGGCCGGTGAGGCCG MSMEG_2949 3008674 - 3011034 + | carbon-monoxide dehydrogenase MSMEG_2950 3011031 - 3011849 + | carbon monoxide dehydrogenase, medium chain MSMEG_2951 3011842 - 3012327 + | 2Fe-2S-binding domain-containing protein TERM 1166 3012521 - 3012539 + G 77 -4.4 -4.68593 | overlap 3012523 GTACGACTGGAGTGT CTACGCGA TCT TCGCGCCG TTTTTCGCTCATCAG MSMEG_2952 3012396 - 3013715 + | transport gene TERM 1167 3014020 - 3014008 - g 71 -2.6 -4.66609 | overlap 3014009 GACGCGATGGAAAAA GCGC TGTCG GCAC CGGAGACCGCGGCGG MSMEG_2953 3013795 - 3014115 + | ethyl tert-butyl ether degradation EthD MSMEG_2954 3014135 - 3015154 + | LacI-family protein transcriptional regulator MSMEG_2955 3015273 - 3015719 + | hypothetical protein TERM 1168 3015711 - 3015761 + T 86 -13.8 -3.75766 | opp_overlap 3015702 3015715, overlap 3015702 3015699 3015712 3015756 3015758 GAGAAACTGCGGCCG CAAACCTGATGTGGCCGCGGTCCT TGT GGGACCGCGGCCACGCCAGGGGGA TTCTTCCCTTGTGGG TERM 1169 3015712 - 3015760 + T 87 -17.3 -2.84978 | opp_overlap 3015702 3015715, overlap 3015702 3015699 3015711 3015756 3015758 AGAAACTGCGGCCGC AAACCTGATGTGGCCGCGGTCCT TGT GGGACCGCGGCCACGCCAGGGGG ATTCTTCCCTTGTGG TERM 1170 3015757 - 3015715 - T 100 -27.1 -3.53343 | opp_overlap 3015702 3015699 3015712 3015711 3015756, overlap 3015702 AACTGCGGCCGCAAA CCTGATGTGGCCGCGGTCC TTGTG GGACCGCGGCCACGCCAGG GGGATTCTTCCCTTG MSMEG_2956 3019291 - 3015785 - | NAD dependent epimerase/dehydratase family protein TERM 1171 3019467 - 3019446 - R 84 -14.4 -3.61654 | opp_overlap 3019444 3019449 GACACTCACGGCAAA CGGCGCGC GGCGCT GCGCGCCG GAGTTATGCCGTTAG MSMEG_2957 3020189 - 3019572 - | hypothetical protein MSMEG_2958 3020304 - 3021023 + | hypothetical protein gabT 3022397 - 3021057 - | 4-aminobutyrate aminotransferase TERM 1172 3022477 - 3022498 + H 71 -7.9 -4.07885 | opp_overlap 3022476 GATCGAGCCTAAACT CCGGCGGCA GTGG TGTAGCCGG TTTTCGACGCGGCTC yajC 3022735 - 3023058 + | preprotein translocase subunit YajC secD 3023131 - 3024993 + | preprotein translocase subunit SecD TERM 1173 3025061 - 3025021 - g 72 -9 -3.9872 | gap 1, overlap 3025024 3025029 3025032 AAAACAGACAAAAGA CGA-CGACACCACCTCGAC CGCC GTCGAGGCCACGCCGATCG AGACGTCGGCCGATT secF 3024998 - 3026266 + | preprotein translocase subunit SecF TERM 1174 3027742 - 3027711 - g 81 -13 -3.8917 | GCCGAACTACAACAA CGAGCGGATCGACG GCAT CATCGACGCGCTCG CGGTCACCTCCGACC MSMEG_2963 3026272 - 3027939 + | extracellular solute-binding protein, family protein 5 MSMEG_2964 3027947 - 3028489 + | adenine phosphoribosyltransferase relA 3028533 - 3030926 + | GTP pyrophosphokinase MSMEG_2966 3032378 - 3030981 - | major facilitator family protein transporter TERM 1175 3031050 - 3031063 + g 71 -9.5 -3.72576 | overlap 3031049 CGAGGTCTCCGACAG CGCGC GACC GCGCG TTTCCTCGCCGAGCA MSMEG_2967 3032989 - 3032378 - | hypothetical protein MSMEG_2968 3033121 - 3033750 + | hypothetical protein TERM 1176 3033886 - 3033910 + G 78 -12.1 -3.78775 | overlap 3033892 TGGCCGGCTATTACG CCGAATTCGCC CGC GGCGGTTTCGG TTTGGTGATCACCGA TERM 1177 3034392 - 3034423 + G 82 -14.4 -3.80014 | gap 1 CTCGCCGCGCAGATC TCCGCGGCCGTCCGC ACC GCGG-TGGGCGCGGA TTTCCTGGTGGGTGT MSMEG_2969 3033747 - 3034880 + | NADH:flavin oxidoreductase/NADH oxidase MSMEG_2970 3034877 - 3035743 + | polysaccharide deacetylase MSMEG_2971 3037301 - 3035748 - | regulatory protein TERM 1178 3038114 - 3038160 + G 70 -8.6 -3.87815 | overlap 3038115 TGACCGCCATCGGCA TCGGCTGGGGTCTGACGTGGAT TCC GTACGCATCGGACTACAGCCGG TTTGTCCGCGTCGGC MSMEG_2972 3037408 - 3038829 + | permease, cytosine/purines, uracil, thiamine, allantoin family protein MSMEG_2973 3039791 - 3038835 - | peptidyl-prolyl cis-trans isomerase TERM 1179 3039776 - 3039809 + g 80 -16.8 -3.14344 | gap 1 CGCCGGACCACCCAC CCGGA-TACCCGGGC ACAGG GCCCGGGTGGTCCGG TTGGTAGCCGCCATA MSMEG_2974 3040748 - 3039885 - | peptidyl-prolyl cis-trans isomerase, cyclophilin-type MSMEG_2975 3040917 - 3041594 + | metallo-beta-lactamase family protein TERM 1180 3042836 - 3042872 + G 79 -7.3 -4.43911 | gap 1 GTCCCCGCAGATTCC GTTGTCG-CCGAGGTG CTTTCC CGCCTCGGTCGGTAGC TTTTCGTTGCACTTT hisS 3041591 - 3042871 + | histidyl-tRNA synthetase MSMEG_2977 3042909 - 3043118 + | hypothetical protein MSMEG_2978 3044086 - 3043394 - | ABC transporter ATP-binding protein MSMEG_2979 3044898 - 3044086 - | ABC transporter ATP-binding protein MSMEG_2980 3046022 - 3044895 - | hypothetical protein MSMEG_2981 3046903 - 3046019 - | branched-chain amino acid ABC-type transport system, permease component TERM 1181 3046181 - 3046151 - G 72 -3.8 -4.64598 | opp_overlap 3046151, overlap 3046152 3046153 GAAGGAGTTCAAAAA GCCCAGCGTCAGCG CCG CGATGACGGTGCCC TTGATCTGGCCGAGC TERM 1182 3046844 - 3046831 - G 75 -9.5 -4.06491 | CGAACGTCAGAGAAA GGCCG AGTG CGGCC AGCAACAGGATCGAG TERM 1183 3046875 - 3046850 - G 72 -14.1 -3.14344 | opp_overlap 3046852 GAGTGCGGCCAGCAA CAGGATCGAGC CGAG GCTCAATCCTG TTGCCAGCTGGCCGA MSMEG_2982 3048207 - 3046939 - | putative periplasmic binding protein MSMEG_2983 3048445 - 3048876 + | hypothetical protein TERM 1184 3048903 - 3048947 + T 93 -18.8 -3.794 | gap 1, overlap 3048904 3048908 3048941 TCAACATCTGAGAGC TGCTTGACACCCCTATCGAAC TGTT GTTCGATAGGGGTGTCT-GCG TTTGATCGGTTCCGC TERM 1185 3048904 - 3048946 + T 100 -20.1 -2.87319 | gap 1, overlap 3048903 3048908 3048941 CAACATCTGAGAGCT GCTTGACACCCCTATCGAAC TGTT GTTCGATAGGGGTGTCT-GC GTTTGATCGGTTCCG TERM 1186 3048908 - 3048943 + T 100 -25 -2.68546 | overlap 3048904 3048903 3048941 ATCTGAGAGCTGCTT GACACCCCTATCGAAC TGTT GTTCGATAGGGGTGTC TGCGTTTGATCGGTT MSMEG_2984 3049870 - 3049055 - | putative hydrolase TERM 1187 3049202 - 3049184 - G 70 -12.4 -3.28924 | opp_overlap 3049166, overlap 3049193 CAGCGCCGCGGAGAA CGGGACGA ACG CCGTCCCG TACGGCGCCGCACCC MSMEG_2985 3051504 - 3049867 - | fumarate hydratase class I, anaerobic MSMEG_2986 3052844 - 3051501 - | amidohydrolase, AtzE family protein TERM 1188 3051673 - 3051691 + g 70 -14.6 -2.78463 | AGTGCCGATCGCACC TCGACGGC GTG GCCGTCGA TCTGGTGGGCGCGCT TERM 1189 3053519 - 3053543 + r 73 -5.5 -4.34402 | GGGGTCACCACGCCG CCGAGCACGCC ACC GGTGAGTACGG TTTTGATATCGGCAC MSMEG_2988 3054882 - 3053983 - | carbon-nitrogen hydrolase family protein TERM 1190 3054947 - 3054973 + H 100 -21 -3.44527 | opp_overlap 3054931 GCCCGGCCCTGGTTG CCCGAACGTTCG GGC CGAACGTTCGGG TTATACTGCTCCGTG MSMEG_2989 3055061 - 3056095 + | LacI family protein transcriptional regulator MSMEG_2990 3056145 - 3057179 + | Fe-S protein, radical SAM family protein MSMEG_2991 3057281 - 3058564 + | permease of the major facilitator superfamily protein MSMEG_2992 3059857 - 3058595 - | putative acyl-CoA dehydrogenase MSMEG_2993 3060993 - 3059854 - | acyl-CoA dehydrogenase domain-containing protein MSMEG_2994 3062286 - 3061057 - | amidohydrolase family protein MSMEG_2995 3063033 - 3062374 - | transcriptional regulator, TetR family protein MSMEG_2996 3063126 - 3063980 + | hypothetical protein MSMEG_2997 3063977 - 3064876 + | hypothetical protein MSMEG_2998 3065413 - 3064877 - | hypothetical protein MSMEG_2999 3067063 - 3065438 - | hypothetical protein MSMEG_3000 3067949 - 3067056 - | metallopeptidase, zinc binding MSMEG_3002 3068022 - 3069497 + | para-nitrobenzyl esterase MSMEG_3001 3070009 - 3069494 - | hypothetical protein aspS 3070138 - 3071934 + | aspartyl-tRNA synthetase MSMEG_3004 3071978 - 3072433 + | hypothetical protein MSMEG_3005 3073382 - 3072435 - | 3-hydroxyacyl-CoA dehydrogenase MSMEG_3006 3074650 - 3073373 - | Fe-dependent alcohol dehydrogenase MSMEG_3007 3076152 - 3074647 - | succinate-semialdehyde dehydrogenase TERM 1191 3076157 - 3076189 + H 89 -10.6 -4.58283 | opp_overlap 3076147 3076157, overlap 3076158 ATGAAGCCCAAGCTA G-GGCGGTCGGGGCGG TAT CCG-TCCGACTGCCTC TTTTTGAGACAGTTC TERM 1192 3076158 - 3076187 + H 88 -14.3 -3.90316 | gap 1, opp_overlap 3076147 3076157, overlap 3076157 TGAAGCCCAAGCTAG GGCGGTCGGGGCGG TAT CCG-TCCGACTGCC TCTTTTTGAGACAGT MSMEG_3008 3076326 - 3078044 + | putative sigma 54 type regulator MSMEG_3009 3078793 - 3078062 - | 2,5-dichloro-2,5-cyclohexadiene-1,4-diol dehydrogenase MSMEG_3010 3078871 - 3079857 + | acetyl-hydrolase MSMEG_3011 3079874 - 3081520 + | steroid monooxygenase MSMEG_3012 3082780 - 3081596 - | acetyl-CoA acetyltransferases TERM 1193 3081953 - 3081987 + g 74 -12.9 -3.56092 | gap 1 GGTGGTGGTGTGGAT CCGCGCGAGCGGCTTG AGCC CGAGTCGCTT-CGCGG TTTCACCACTGGTGA MSMEG_3013 3082878 - 3083348 + | putative transcriptional regulator family protein MSMEG_3014 3083838 - 3083458 - | hypothetical protein MSMEG_3015 3084628 - 3083882 - | hypothetical protein TERM 1194 3084197 - 3084211 + g 74 -12.8 -3.59262 | opp_overlap 3084192 CGCCCAAGCAGCCTC GCCGCG CAA CGCGGC TTTGACGCTCTCCGG MSMEG_3016 3084783 - 3088091 + | hypothetical protein TERM 1195 3089751 - 3089798 + G 70 -12.7 -3.32946 | gap 2, overlap 3089749 CGACGCCGGAGACCC GGCCGAGCCCGACACGCGTGGTG AGTT CACCACGCGTG-CTGGCG-GACC TGTTCTGGTTGGGCC MSMEG_3017 3088091 - 3090805 + | hypothetical protein MSMEG_3018 3090802 - 3091722 + | transglutaminase domain-containing protein MSMEG_3019 3091715 - 3092743 + | hypothetical protein MSMEG_3020 3092925 - 3093758 + | hypothetical protein MSMEG_3021 3093797 - 3095140 + | recombination factor protein RarA TERM 1196 3095211 - 3095180 - T 100 -25.2 -3.25823 | opp_overlap 3095180 TCTGCCGCACAGGAA CGGTCCCGGCCCGC CGAG GCGAGCCGGGACCG TCTGGTGAGGGTTCA TERM 1197 3095180 - 3095211 + T 100 -23 -2.79831 | opp_overlap 3095180 TCTGCCGCACAGGAA CGGTCCCGGCCCGC CGAG GCGAGCCGGGACCG TCTGGTGAGGGTTCA MSMEG_3022 3095540 - 3095235 - | transglycosylase associated protein MSMEG_3024 3096393 - 3096782 + | hypothetical protein TERM 1198 3097808 - 3097759 - g 70 -12.7 -3.35679 | gap 1, overlap 3097760 GCCGGTGATCGACAA GGTCGCCGCGGTGGCGCCGCGCGG TTA CGGCGCGG-GCAACCACGATGACG ACGTGCGGTACCGGA TERM 1199 3097807 - 3097760 - g 73 -16.2 -2.61264 | gap 1, overlap 3097759 CCGGTGATCGACAAG GTCGCCGCGGTGGCGCCGCGCGG TTA CGGCGCGG-GCAACCACGATGAC GACGTGCGGTACCGG TERM 1200 3097875 - 3097839 - g 70 -15.2 -2.78816 | gap 1 TCATCGCCGACCACA CCCGCACCG-CGGCGAT CATC ATCGCCGACGGTGTGAG CCCCGGCAACGAGGG alaS 3096983 - 3099673 + | alanyl-tRNA synthetase MSMEG_3026 3099680 - 3100192 + | Holliday junction resolvase-like protein MSMEG_3027 3100185 - 3101429 + | hypothetical protein aroE 3101419 - 3102249 + | shikimate 5-dehydrogenase MSMEG_3029 3102259 - 3102702 + | peptidase, A24 (type IV prepilin peptidase) family protein aroC 3102792 - 3103991 + | chorismate synthase TERM 1201 3104557 - 3104510 - g 71 -11.8 -3.62096 | gap 1, overlap 3104495 3104546 CCGCAGCAGGCCAAA CCTGTCGCCGCGGCACGCACGCC CAA GCCGGGCAAACCGCGCCG-CAGG CGCCGTCCGCCGTGG aroK 3103991 - 3104725 + | shikimate kinase TERM 1202 3105261 - 3105229 - g 74 -12 -3.55444 | gap 1, opp_overlap 3105259 TCGCGACGCTGGAAA CCTTGCCGCGCAACG AGAT CGTCGCG-GGCATGG CCGAGATCGTCAAGG TERM 1203 3105805 - 3105783 - g 79 -14.8 -3.35679 | overlap 3105784 GCCGCGTACGCAGAA TGCGCGGGAC TGA GTCCCGCGCT ACCACAACAACTCTC TERM 1204 3105804 - 3105784 - g 79 -18.3 -2.61264 | overlap 3105783 CCGCGTACGCAGAAT GCGCGGGAC TGA GTCCCGCGC TACCACAACAACTCT aroB 3104730 - 3105851 + | 3-dehydroquinate synthase MSMEG_3032 3106417 - 3105842 - | hypothetical protein MSMEG_3034 3106451 - 3107587 + | metallopeptidase, M24 family protein efp 3107613 - 3108176 + | elongation factor P nusB 3108169 - 3108651 + | transcription antitermination protein NusB TERM 1205 3108673 - 3108708 + F 100 -19.2 -4.82667 | CCAGACCGGCTCAGA CCGTTGTGCCGCAA GGAAGCGA TTGCGGCACAACGG TTTTTCCTGTGGTGC TERM 1206 3108760 - 3108776 + F 79 -11.5 -3.90744 | GCGCGTCTCCCGGCC CGCCGGT TAC GCCGGCG TTATTTGCCCGAACC TERM 1207 3109565 - 3109532 - f 73 -13.7 -2.86271 | overlap 3109529 GCGCCAGCACAACTA CTGGCGCTGGACCGG GGAC CCGGTCCTGCCCCCG GGCCTGGTGGAGCTG MSMEG_3038 3111537 - 3111776 + | hypothetical protein MSMEG_3039 3112989 - 3111781 - | monooxygenase MSMEG_3040 3114259 - 3113057 - | beta-lactamase MSMEG_3041 3114978 - 3114301 - | thiopurine S-methyltransferase (tpmt) superfamily protein MSMEG_3042 3115075 - 3115632 + | pyrimidine regulatory protein PyrR pyrB 3115629 - 3116585 + | aspartate carbamoyltransferase catalytic subunit pyrC 3116582 - 3117916 + | dihydroorotase MSMEG_3045 3117913 - 3118413 + | integral membrane protein carA 3118410 - 3119558 + | carbamoyl phosphate synthase small subunit TERM 1208 3119534 - 3119571 + F 71 -4 -4.56597 | gap 1, overlap 3119536 CCAGTTCATCGACCT GATGG-CGGGGGAGCAC CACTC GTGACCCGCCGCCCGTC TTTTTCCACCGCGAG TERM 1209 3120966 - 3120950 - g 72 -13.7 -3.14564 | GCAGCTGCTGACCAA CCTGCGC ACC GCGCAGG ACGGCCGCATCTACG carB 3119664 - 3123011 + | carbamoyl phosphate synthase large subunit pyrF 3123008 - 3123838 + | orotidine 5'-phosphate decarboxylase MSMEG_3049 3124661 - 3124455 - | hypothetical protein MSMEG_3050 3124973 - 3125290 + | integration host factor gmk 3125301 - 3125903 + | guanylate kinase MSMEG_3052 3126033 - 3125908 - | hypothetical protein rpoZ 3126019 - 3126342 + | DNA-directed RNA polymerase subunit omega coaBC 3126361 - 3127605 + | bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase metK 3127746 - 3128945 + | S-adenosylmethionine synthetase TERM 1210 3128963 - 3128990 + F 90 -16.4 -3.39327 | TCGTCTTGTCCGGAA CTGCCCGATCTC TTCG GAGATTGGGCAG TTCTGCGTCTGACGG TERM 1211 3129548 - 3129528 - g 86 -13.9 -3.96068 | GGAGGGCAACAACAA CGCGTGGGC ATC GCCCGCGCG CTCGCGGCGCATCCC MSMEG_3056 3129093 - 3130088 + | ABC transporter ATP-binding protein TERM 1212 3130387 - 3130420 + G 73 -9.6 -3.86015 | TCTGGGCACCGTCGC CGCGATGGTGCC ACTGACCATC GGCACCATCCCG TTTCTCGCGCGGCTG MSMEG_3057 3130085 - 3130825 + | ABC-type metal ion transport system, permease component TERM 1213 3131458 - 3131424 - g 71 -2.1 -4.66833 | gap 2 CGGCAACCCGAAAAA CCTGCAGTTCATCGAGG CCG CACCG--GATCTGCAGG CCAAGGCAGTTCCGG MSMEG_3058 3130870 - 3131709 + | lipoprotein, nlpa family protein TERM 1214 3131777 - 3131731 - T 100 -26.9 -3.56643 | opp_overlap 3131732 3131740, overlap 3131732 3131740 GCGACAGCCGCCAAA GCGACGAAATCGTCGCAATCC CAACC GGATTGCGACGATTTCGTCGT TCTCGGGACTAGCTG TERM 1215 3131776 - 3131732 - T 100 -30.4 -2.73771 | opp_overlap 3131732 3131740, overlap 3131731 3131740 CGACAGCCGCCAAAG CGACGAAATCGTCGCAATCC CAACC GGATTGCGACGATTTCGTCG TTCTCGGGACTAGCT TERM 1216 3131732 - 3131776 + T 100 -30.4 -3.30243 | opp_overlap 3131732 3131731 3131740, overlap 3131740 CGACAGCCGCCAAAG CGACGAAATCGTCGCAATCC CAACC GGATTGCGACGATTTCGTCG TTCTCGGGACTAGCT TERM 1217 3131768 - 3131740 - T 95 -17.6 -3.82097 | opp_overlap 3131732 3131740, overlap 3131732 3131731 GCCAAAGCGACGAAA TCGTCGCAATCC CAACC GGATTGCGACGA TTTCGTCGTTCTCGG TERM 1218 3131740 - 3131768 + T 95 -17.6 -3.86944 | opp_overlap 3131740 3131732 3131731, overlap 3131732 GCCAAAGCGACGAAA TCGTCGCAATCC CAACC GGATTGCGACGA TTTCGTCGTTCTCGG MSMEG_3059 3132673 - 3131786 - | esterase MSMEG_3060 3132768 - 3133439 + | hypothetical protein TERM 1219 3134173 - 3134183 + G 72 -8.2 -4.08216 | overlap 3134150 GGTGGTGATCGGAAC CCGC AGC GCGG TTTTCGCGCCGGTGG priA 3133436 - 3135436 + | primosome assembly protein PriA MSMEG_3062 3135497 - 3137305 + | hypothetical protein TERM 1220 3137550 - 3137514 - g 70 -15.7 -2.72344 | GGCGATCCTCAACCA GGTCACCTCGGCCCGCG CGG CGCTGGCCGCCGCGACC ACGGGCACCTCGGTC MSMEG_3063 3137299 - 3137835 + | LemA protein TERM 1221 3138772 - 3138750 - g 86 -18.4 -3.20367 | overlap 3138741 CAAGAAGCTCATGAA CGCCGCGGAC TGG GCCCGCGGCG CCCGCCTCGAAGAAC fmt 3137866 - 3138804 + | methionyl-tRNA formyltransferase sun 3138801 - 3140195 + | ribosomal RNA small subunit methyltransferase B rpe 3140241 - 3140918 + | ribulose-phosphate 3-epimerase ribD 3140915 - 3141922 + | riboflavin biosynthesis protein RibD MSMEG_3068 3142059 - 3142244 + | hypothetical protein MSMEG_3069 3143939 - 3142257 - | aminoglycosides/tetracycline-transport integral membrane protein MSMEG_3070 3144667 - 3143957 - | LprG protein ribE 3144739 - 3145338 + | riboflavin synthase subunit alpha TERM 1222 3145767 - 3145740 - g 75 -4.8 -4.62069 | opp_overlap 3145743, overlap 3145743 3145744 CGTCGACGCGAAAAA GGATGTCGGAAC CGGC ATTTCGGCATCC GACCGGGCGACCACG MSMEG_3072 3145459 - 3146778 + | bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein ribH 3146775 - 3147251 + | riboflavin synthase subunit beta MSMEG_3074 3147248 - 3147721 + | hypothetical protein MSMEG_3075 3148219 - 3147737 - | acetyltransferase, GNAT family protein ggt 3150126 - 3148216 - | gamma-glutamyltransferase TERM 1223 3148245 - 3148278 + g 82 -17.5 -3.07935 | gap 1 CCATCACGAGTCCCT CCCGGCGTGGATCGGC ACC GCCGATCCAC-CCGGA TTCGGTCCGTGCGAT TERM 1224 3149895 - 3149933 + g 77 -18.1 -2.64735 | CGGTGGCCAGCGGAT TCGCGGTGGCCACCGCG TACGT CGCGGTGCGCACCGCGG TCATGTCGGTGCGGT MSMEG_3077 3150308 - 3150120 - | hypothetical protein TERM 1225 3151529 - 3151566 + GH 71 -12.7 -3.01712 | gap 1, opp_overlap 3151528 GTGCGTCGACATCAG CCACGTGC-AGGGCACCG ATG TGGTGGCCTCGCTCGTGG TGTTCGAGGACGGGC uvrC 3150228 - 3152348 + | excinuclease ABC subunit C MSMEG_3079 3152446 - 3153321 + | hypothetical protein MSMEG_3080 3153318 - 3154382 + | hypothetical protein MSMEG_3081 3154391 - 3155356 + | hypothetical protein MSMEG_3082 3155445 - 3155837 + | SOUL heme-binding protein MSMEG_3083 3155827 - 3157173 + | nucleoside-diphosphate sugar epimerase gap 3157277 - 3158299 + | glyceraldehyde-3-phosphate dehydrogenase, type I pgk 3158305 - 3159531 + | phosphoglycerate kinase tpiA 3159535 - 3160320 + | triosephosphate isomerase secG 3160365 - 3160601 + | preprotein translocase subunit SecG TERM 1226 3160607 - 3160625 + T 84 -17.4 -2.70932 | opp_overlap 3160596 3160595 CAACGTCTGATCCCG CCCGGGCC GGC GGCCCGGG TGGTTGAGCAGGAAA TERM 1227 3160660 - 3160643 - T 74 -2.5 -4.77036 | overlap 3160644 GTTGAGCAGGAAAAA TCCCCGG TCTT CAGGGGT CGTCAGCGGGGTGTC TERM 1228 3160666 - 3160680 + T 77 -12.8 -3.33162 | CTTCAGGGGTCGTCA GCGGGG TGT CCCCGC TTGTAGCATCCGATC deoC 3162525 - 3161830 - | deoxyribose-phosphate aldolase MSMEG_3090 3163551 - 3162550 - | ribose transport system permease protein RbsC MSMEG_3091 3165091 - 3163544 - | ribose transport ATP-binding protein RbsA MSMEG_3092 3166037 - 3165093 - | transcriptional regulator, sugar-binding family protein MSMEG_3093 3167596 - 3166037 - | putative sugar kinase protein MSMEG_3094 3168691 - 3167600 - | oxidoreductase, zinc-binding dehydrogenase family protein MSMEG_3096 3168630 - 3168773 + | hypothetical protein MSMEG_3095 3169684 - 3168749 - | D-ribose-binding periplasmic protein TERM 1229 3169241 - 3169273 + g 78 -13.4 -3.53761 | gap 1 GATCTCGATGATCTT GCCGCCGTCGGGCCC GAGC GTGT-CGACGGCGGC TTTGCCGACGAGTTC ppc 3169942 - 3172743 + | phosphoenolpyruvate carboxylase MSMEG_3098 3173117 - 3172746 - | hypothetical protein TERM 1230 3173058 - 3173105 + g 72 -8.2 -4.05033 | gap 1, opp_overlap 3173084 3173085 GTTCAGCGCAGCCTG GGTGAGGGTCTTGATCCGACCGG AAA CCGGGCGGC-CGCGACCGTCCCC TTTGTCTGCCATACC pgl 3173905 - 3173171 - | 6-phosphogluconolactonase TERM 1231 3173863 - 3173840 - G 80 -16 -3.18582 | opp_overlap 3173842, overlap 3173827 GATGGCATCCACCAA CCGGTCGCCG GCCG CGGCGACCAG CGCCGCAGTGTCCGC opcA 3174813 - 3173902 - | OpcA protein zwf 3176380 - 3174830 - | glucose-6-phosphate 1-dehydrogenase TERM 1232 3176287 - 3176314 + g 100 -17.8 -3.96291 | gap 1, opp_overlap 3176281 3176278 3176276 CGAAGATCACCACCC CGCATGGCCCCGC GAT GCGGGGC-ATGCG TTTGTCGCGTTTGTC tal 3177492 - 3176377 - | transaldolase TERM 1233 3177022 - 3177067 + g 72 -13.9 -3.14881 | opp_overlap 3176991 3176989 CGAGATGCCCTCGGC GATCACGGCGCTGATGGCGGG CAGG CCCGCCATGGTCGCGGGGATC TTGATCAGCAGGTTG tkt 3179617 - 3177527 - | transketolase MSMEG_3104 3179681 - 3179839 + | hypothetical protein TERM 1234 3180158 - 3180119 - g 77 -15.6 -3.19653 | gap 1, opp_overlap 3180152, overlap 3180110 CGACAAGGTCATGAA GCGCACCG-CGCGCAGGCC GCT GGCCAGGGCGACGGTGCCC ACGCGGCACGCGTTG TERM 1235 3180248 - 3180266 + G 73 -12.4 -3.43217 | GCTGTCCGGGCTTCT CGCGGTCG CCA CGATCGCG TTCTACGTCTTCGTC cyoE 3179862 - 3180788 + | protoheme IX farnesyltransferase MSMEG_3106 3181869 - 3180841 - | quinone oxidoreductase MSMEG_3107 3181861 - 3182799 + | hypothetical protein MSMEG_3108 3183879 - 3182812 - | ABC transporter, ATPase subunit TERM 1236 3183098 - 3183050 - G 74 -12.4 -3.57144 | gap 2 GGCCGCAGGGTCAAA TCGTCGGGCCGCACGCCG-A-CGG TCA CCGCTGCGGCATCGGGCCCGCCGA CGCGGATCCGCAAAC MSMEG_3109 3184715 - 3183900 - | binding-protein-dependent transport systems inner membrane component MSMEG_3110 3185575 - 3184712 - | binding-protein-dependent transport systems inner membrane component MSMEG_3111 3186944 - 3185616 - | extracellular solute-binding protein, family protein 1 MSMEG_3112 3187794 - 3187000 - | estradiol 17-beta-dehydrogenase 8 TERM 1237 3187197 - 3187235 + g 74 -14.6 -3.04792 | CCCACTCCAATTCTC GTGTCTGCATCGGTGTTG CCA CGAAACCGGGGCAGACAC TGTTGACCGTGATGC MSMEG_3113 3189278 - 3187791 - | carbohydrate kinase, FGGY TERM 1238 3190131 - 3190079 - g 83 -14.8 -3.62046 | gap 1, opp_overlap 3190082, overlap 3190130 GCAGGTGGTCAAGAA CGCCGCGGGCGAG-GTGCCGGTGTT CGTC AACACCGGCGTGCGCGCCCACAACG CGGCCGAGCAGCTCG MSMEG_3114 3189456 - 3190271 + | hypothetical protein MSMEG_3116 3190268 - 3191017 + | inositol-1-monophosphatase MSMEG_3115 3191818 - 3191000 - | regulatory protein, DeoR MSMEG_3117 3192839 - 3191877 - | cytochrome aa3 controlling protein MSMEG_3118 3193669 - 3192884 - | ABC transporter efflux protein, DrrB family protein MSMEG_3119 3194634 - 3193666 - | ABC transporter, ATP-binding subunit MSMEG_3120 3196310 - 3194631 - | hypothetical protein MSMEG_3121 3196382 - 3197227 + | DNA-binding protein sufB 3197224 - 3198657 + | FeS assembly protein SufB sufD 3198660 - 3199871 + | FeS assembly protein SufD sufC 3199871 - 3200644 + | FeS assembly ATPase SufC MSMEG_3125 3200647 - 3201891 + | cysteine desulfurase MSMEG_3126 3201888 - 3202382 + | SUF system FeS assembly protein, NifU family protein MSMEG_3127 3202379 - 3202720 + | hypothetical protein MSMEG_3128 3203860 - 3202721 - | hypothetical protein MSMEG_3129 3204447 - 3203857 - | putative HTH-type transcriptional regulator TERM 1239 3204175 - 3204147 - G 82 -16 -3.28712 | gap 1, overlap 3204119 GGCGTTCGGCGAGAA CGGCCGCGACCGC CGGG GCGGCCG-GGCCG GACAGCCAGCCCGTC TERM 1240 3204517 - 3204500 - R 73 -14.1 -2.83164 | GTATCTATCATCAGA GCGCCGC GGCG GCGGCGC GCAGGCGTCCCTCGA MSMEG_3130 3204944 - 3204495 - | hypothetical protein MSMEG_3131 3206757 - 3205123 - | AMP-binding protein TERM 1241 3207169 - 3207142 - g 73 -7 -4.11692 | gap 1, overlap 3207143 CACGCACCGTGAAAA GCTGCAACCCGAC GAC GTCGGGCTG-ACC AAGGGGCATCGTCGG MSMEG_3132 3207089 - 3207892 + | DNA-binding protein MSMEG_3133 3209825 - 3209187 - | hypothetical protein MSMEG_3134 3208009 - 3209274 + | cytochrome P450 107B1 MSMEG_3135 3209352 - 3209747 + | hypothetical protein TERM 1242 3209959 - 3209930 - g 70 -9.1 -3.87583 | overlap 3209925 AAACCGAAACCGAAA CGGACGCCGCCCG ATTG CGCGCCGCGTGCG AACGCGACCTGGGCG MSMEG_3136 3209887 - 3210606 + | heme peroxidase superfamily protein TERM 1243 3211111 - 3211059 - g 74 -15.3 -3.03124 | overlap 3211100 CGTCAGGTGTCAACA GTGTCGGGGCGGCTCACGGCCGCGC CCT GCGCGGCGACGAACTGCCCGGCCTC GCAGCGCAATACGCC TERM 1244 3211537 - 3211516 - g 77 -14.5 -3.21099 | CGGGTGGACCAGGAA GATCACGGG TATC CCCGTGATC GGTGTCGGATCGGTC MSMEG_3137 3210665 - 3211774 + | oxidoreductase trx 3211820 - 3212194 + | thioredoxin MSMEG_3139 3212249 - 3213070 + | enoyl-CoA hydratase TERM 1245 3213952 - 3213928 - g 100 -14.9 -4.8543 | CAATGCCGAGAAAAA GGCCGGCGCAC TGC GCGCGCAGGCC GCCAAGATGGGCGCC MSMEG_3140 3213101 - 3214729 + | ABC transporter ATP-binding protein MSMEG_3141 3214859 - 3215056 + | hypothetical protein MSMEG_3142 3215708 - 3215094 - | HTH-type transcriptional repressor AcnR TERM 1246 3215617 - 3215567 - G 82 -17.5 -3.05294 | gap 1, opp_overlap 3215565 3215567 3215574 3215582 TGAAATGGTGGAAGA TCGCG-CCGCGCGACAGCCCGATG GTCT CTTCGAGCCGCCGCACGGTCGCGC TCTCGTATCCGTACT TERM 1247 3215680 - 3215643 - G 74 -16.4 -2.71364 | GTACTTGGCGAAGCA CCG-GCGGGCGCCGTCAA GGAT CTGACGGCGC-CGCGCGG CCAAGTGGTCGTCGG acnA 3218591 - 3215760 - | aconitate hydratase 1 MSMEG_3144 3218854 - 3219456 + | hypothetical protein MSMEG_3145 3219661 - 3221154 + | secreted cell wall-associated hydrolase MSMEG_3146 3221174 - 3221863 + | invasin 1 moxR 3222173 - 3223219 + | ATPase, MoxR family protein MSMEG_3148 3223216 - 3224163 + | hypothetical protein MSMEG_3149 3224240 - 3225223 + | hypothetical protein fabG 3225346 - 3226113 + | 3-oxoacyl-(acyl-carrier-protein) reductase MSMEG_3151 3226161 - 3226970 + | enoyl-(acyl carrier protein) reductase TERM 1248 3227531 - 3227484 - g 72 -13.5 -3.14211 | gap 2, overlap 3227496 ACCCTGCCCGAGGAA CTGCGGGACGAAGCGCGGCTGGT GTTC ACC-GCC-CACTCCATCCCGCTG CGTGCCGCGTCGCGT hemH 3226977 - 3227999 + | ferrochelatase MSMEG_3153 3228908 - 3228033 - | hypothetical protein MSMEG_3154 3228967 - 3229401 + | membrane protein implicated in regulation of membrane protease activity MSMEG_3155 3229445 - 3230671 + | band 7 protein MSMEG_3156 3230729 - 3231052 + | hypothetical protein MSMEG_3157 3231804 - 3231067 - | hypothetical protein mutA 3231961 - 3233832 + | methylmalonyl-CoA mutase, small subunit MSMEG_3159 3233834 - 3236089 + | methylmalonyl-CoA mutase MSMEG_3160 3236097 - 3237074 + | arginine/ornithine transport system ATPase TERM 1249 3237287 - 3237271 - g 79 -2.9 -4.8622 | overlap 3237272 CTTGCGAAGGAAAAA CTCGAAG CCG CTGCGAA GCGGAAAGCCAAGTC MSMEG_3161 3237127 - 3237477 + | hypothetical protein MSMEG_3162 3237553 - 3238818 + | beta-lactamase MSMEG_3163 3239595 - 3238864 - | gp55 protein MSMEG_3164 3239999 - 3239637 - | hypothetical protein MSMEG_3165 3240241 - 3240942 + | IS1096, tnpR protein MSMEG_3166 3242272 - 3240950 - | IS1096, tnpA protein MSMEG_3167 3241991 - 3242389 + | hypothetical protein MSMEG_3168 3242433 - 3242996 + | phenolpthiocerol synthesis type-i polyketide synthase ppse ileS 3243269 - 3246391 + | isoleucyl-tRNA synthetase MSMEG_3170 3246664 - 3246446 - | hypothetical protein MSMEG_3172 3246698 - 3248089 + | DNA polymerase IV MSMEG_3171 3248559 - 3248071 - | hypothetical protein TERM 1250 3248636 - 3248611 - R 74 -5.3 -4.4891 | gap 1, overlap 3248612 CCCATGAGGAGAAAA CCTCGCGCA-CG GGC CGCTGCGCGGCG AGCGCGGCCATCAGC MSMEG_3173 3249553 - 3248591 - | L-asparaginase TERM 1251 3249638 - 3249609 - g 78 -12.1 -3.767 | gap 1 GAGTGACTGATGAAA CGTCAGGC-CCGGC TGA GCCGGTGACCGACG CACCCGGGGATGCCG lspA 3249596 - 3250303 + | lipoprotein signal peptidase MSMEG_3175 3250303 - 3251232 + | ribosomal large subunit pseudouridine synthase D rarD 3251229 - 3252143 + | RarD protein MSMEG_3177 3252280 - 3252924 + | transcriptional regulatory protein, putative dnaE 3253007 - 3256561 + | DNA polymerase III subunit alpha MSMEG_3179 3257036 - 3256584 - | pyridoxamine 5'-phosphate oxidase family protein MSMEG_3180 3257094 - 3257483 + | transcriptional regulator, MerR family protein MSMEG_3181 3257504 - 3257905 + | hypothetical protein MSMEG_3182 3257923 - 3258243 + | hypothetical protein ilvA 3258382 - 3259674 + | threonine dehydratase treZ 3261521 - 3259770 - | malto-oligosyltrehalose trehalohydrolase TERM 1252 3263215 - 3263199 - R 75 -10.1 -3.8211 | overlap 3263200 CGTGATGGAGAAGAA CCTGCGG TAC CCGCAGA TGCCGCGGCGCCATC glgX 3265954 - 3263798 - | glycogen debranching enzyme GlgX MSMEG_3187 3268118 - 3265959 - | acyltransferase domain-containing protein TERM 1253 3266917 - 3266972 + g 90 -17.4 -3.48276 | gap 1, overlap 3266918 GATCCCAGCACGATC GTGGGCCGGCGCAGGCGTGCCCGCAGT GGT ACCGCGGGCACGGGCGCGC-GGCCCGG TTGTGTGCGCAGCGG TERM 1254 3266918 - 3266971 + g 86 -20.9 -2.68823 | gap 1, overlap 3266917 ATCCCAGCACGATCG TGGGCCGGCGCAGGCGTGCCCGCAGT GGT ACCGCGGGCACGGGCGCGC-GGCCCG GTTGTGTGCGCAGCG bioA 3268212 - 3269510 + | adenosylmethionine--8-amino-7-oxononanoate transaminase bioF 3269639 - 3270787 + | 8-amino-7-oxononanoate synthase bioD 3270784 - 3271461 + | dithiobiotin synthetase MSMEG_3191 3271486 - 3271995 + | hypothetical protein MSMEG_3192 3272008 - 3272769 + | hypothetical protein MSMEG_3193 3273387 - 3272770 - | transcriptional regulator, TetR family protein bioB 3273453 - 3274514 + | biotin synthase MSMEG_3195 3274521 - 3274763 + | hypothetical protein MSMEG_3196 3274778 - 3275455 + | hypothetical protein MSMEG_3197 3276816 - 3275485 - | lipase TERM 1255 3275816 - 3275835 + g 70 -8.6 -3.86202 | overlap 3275817 AGCAGCACGGGTGGA TTCGGTGT CGCC ACACCGAG TTTGATGTCGTCGAA MSMEG_3198 3277524 - 3276859 - | hydrolase, NUDIX family protein nadA 3277598 - 3278641 + | quinolinate synthetase nadB 3278638 - 3280233 + | L-aspartate oxidase nadC 3280227 - 3281093 + | nicotinate-nucleotide pyrophosphorylase MSMEG_3202 3282659 - 3281139 - | hypothetical protein TERM 1256 3281391 - 3281438 + g 70 -12.6 -3.28712 | gap 1, opp_overlap 3281415 3281416, overlap 3281383 CGCATTGCCGGGGTT GCCGGTCTTGCC-GTCGCGGC CAAATCC GCCGCGGCCGGCCTGACCGCC TTGTCCGGGGCGGGC TERM 1257 3282956 - 3282937 - R 90 -7.8 -4.87665 | opp_overlap 3282950, overlap 3282939 GGCTACCGATAAAAA GGTCGCCA CGAA TGGCGATC CGCGGTTATTTCGGT MSMEG_3203 3283682 - 3283047 - | transporter, LysE family protein MSMEG_3204 3284072 - 3283704 - | hypothetical protein TERM 1258 3284126 - 3284170 + H 82 -4.2 -5.08601 | gap 2, opp_overlap 3284116 3284115, overlap 3284128 ACAACTCGGGCTCCG TTCG-CGGGTGCCG-CGACCAC CCG GAGGTTGACGGTGGCCGACGGA TTTTTATTCAAGTGG TERM 1259 3285260 - 3285289 + G 76 -7.2 -4.25283 | gap 2, overlap 3285236 TCGACGCCCCCGGCG TGG--CCGGCCGGA TCCG TTCGGCCGGAGCCA TTTTCGTGGGCGCCT hisD 3284200 - 3285537 + | histidinol dehydrogenase hisC 3285537 - 3286676 + | histidinol-phosphate aminotransferase hisB 3286673 - 3287293 + | imidazoleglycerol-phosphate dehydratase TERM 1260 3287805 - 3287826 + G 70 -12.3 -3.28712 | gap 1, overlap 3287790 TCACGTGCCCTTCAT CGCCGCCGTC GAG GACGGCG-CG TTGTCGGCCACGCAA hisH 3287290 - 3287907 + | imidazole glycerol phosphate synthase subunit HisH MSMEG_3209 3287922 - 3288698 + | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase MSMEG_3210 3288695 - 3289525 + | inositol monophosphate phosphatase hisF 3289522 - 3290307 + | imidazole glycerol phosphate synthase subunit HisF hisIE 3290318 - 3290665 + | phosphoribosyl-AMP cyclohydrolase MSMEG_3213 3290670 - 3292352 + | hypothetical protein MSMEG_3214 3292342 - 3293334 + | hypothetical protein MSMEG_3215 3294139 - 3293342 - | ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA MSMEG_3216 3294721 - 3294257 - | peroxiredoxin Q trpE 3294784 - 3296358 + | anthranilate synthase component I MSMEG_3218 3296355 - 3296969 + | hypothetical protein trpC 3297046 - 3297864 + | indole-3-glycerol-phosphate synthase trpB 3297900 - 3299177 + | tryptophan synthase subunit beta trpA 3299174 - 3299962 + | tryptophan synthase subunit alpha TERM 1261 3301052 - 3301021 - g 70 -13.1 -3.29211 | overlap 3301016 GAACCCGAAACCGAA GCGGCCA-CCGCGGT ACTC ACCGCGGATGGC-GC CGAGGCCATGTCGGT MSMEG_3222 3299959 - 3301809 + | prolipoprotein diacylglyceryl transferase MSMEG_3223 3301936 - 3302223 + | TM2 domain-containing protein MSMEG_3224 3302213 - 3302626 + | hypothetical protein MSMEG_3225 3302712 - 3307268 + | ferredoxin-dependent glutamate synthase 1 MSMEG_3226 3307261 - 3308763 + | glutamate synthase, NADH/NADPH, small subunit TERM 1262 3309499 - 3309465 - g 73 -7.1 -4.14392 | CGCCAAGCTGGAAAA GC-CCGAGGCCATCGAG AAT CTCGA-GGCCGTGGTGC TGGCGTTCGACGCCG pyk 3308803 - 3310221 + | pyruvate kinase TERM 1263 3310381 - 3310434 + G 80 -17.4 -2.83403 | gap 2, opp_overlap 3310337 3310366 3310409, overlap 3310381 CCGCGCAGGCGTTCG TCGCCG-CGGGGCGCTCG-CTTGAGC ACAA GCTCTCGCCGAGCGCCCTGTCGGCGC ATTTCATCGCAGGCG TERM 1264 3310381 - 3310435 + G 90 -15.8 -3.72576 | gap 3, opp_overlap 3310337 3310366 3310409, overlap 3310381 CCGCGCAGGCGTTCG T-CGCCG-CGGGGCGCTCG-CTTGAGC ACAA GCTCTCGCCGAGCGCCCTGTCGGCGCA TTTCATCGCAGGCGG MSMEG_3228 3310245 - 3311108 + | acyl-CoA thioesterase II MSMEG_3229 3311981 - 3311187 - | hypothetical protein cydD 3314999 - 3313470 - | ABC transporter, CydDC cysteine exporter (CydDC-E) family protein, permease/ATP-binding protein CydD cydB 3316147 - 3315095 - | cytochrome D ubiquinol oxidase, subunit II MSMEG_3233 3317624 - 3316161 - | cytochrome D ubiquinol oxidase subunit 1 TERM 1265 3317049 - 3317039 - G 72 -6.8 -4.26903 | CGCAGGCCACGAAAA CACC TGC GGTG AGGAACGCGCCCGAC MSMEG_3234 3318295 - 3317720 - | integral membrane protein MSMEG_3235 3318528 - 3319415 + | ABC-type amino acid transport system, secreted component MSMEG_3236 3319425 - 3320357 + | ABC-type amino acid transport system, permease component MSMEG_3237 3320354 - 3321139 + | ATP-binding protein MSMEG_3238 3321162 - 3322022 + | 3-mercaptopyruvate sulfurtransferase MSMEG_3239 3322077 - 3323213 + | two-component system sensor kinase TERM 1266 3323271 - 3323298 + G 74 -12.6 -3.58343 | CGATCTGGCGAGATG CCGTCGCCCGCG ACCT CGCCGACGACGG TTTCGACGTCGTCGC MSMEG_3240 3323210 - 3323869 + | DNA-binding response regulator, LuxR family protein MSMEG_3241 3323913 - 3325754 + | hypothetical protein MSMEG_3242 3325818 - 3326303 + | starvation-inducible DNA-binding protein or fine tangled pili major subunit TERM 1267 3327242 - 3327263 + G 70 -13 -3.28791 | CCTGTCGGCGTAGTG CCGCGTGC GGGCGG GCACGCGG TTGTCGAGCGCCAGT TERM 1268 3327688 - 3327676 - g 79 -5.5 -4.68512 | overlap 3327679 TCAGAAGAAAAAGAA GCACT CCG AGCGC GGCGCAAACGTCCGC MSMEG_3244 3327095 - 3328519 + | hypothetical protein TERM 1269 3328558 - 3328615 + F 100 -37.5 -2.57132 | opp_overlap 3328581, overlap 3328558 GCGCCCGATCTCACA TCGAGATTGCACTGAGGGACAGATCCC GAGC GGGATCTGTCCCTCAGTGCAATCTGGA GTTCTCCCGCGCAGG TERM 1270 3328558 - 3328616 + F 100 -31.5 -3.28712 | gap 1, opp_overlap 3328581, overlap 3328558 GCGCCCGATCTCACA -TCGAGATTGCACTGAGGGACAGATCCC GAGC GGGATCTGTCCCTCAGTGCAATCTGGAG TTCTCCCGCGCAGGC MSMEG_3246 3328852 - 3329478 + | response regulator MSMEG_3247 3329756 - 3330919 + | branched-chain amino acid ABC transporter substrate-binding protein TERM 1271 3330972 - 3330921 - f 77 -11.5 -3.73953 | gap 1, opp_overlap 3330934, overlap 3330934 ACGACGTCCAGTAAA TCGTCTGCCGAAACGCGTCCGGGG CCGCT CCCCGGGCGCGTTTCG-CTACCCA TCACTCATCAGGGAG TERM 1272 3330934 - 3330960 + F 93 -18.7 -3.65351 | opp_overlap 3330921 3330934 AATCGTCTGCCGAAA CGCGTCCGGGG CCGCT CCCCGGGCGCG TTTCGCTACCCATCA TERM 1273 3330960 - 3330934 - f 91 -16.5 -3.53343 | opp_overlap 3330934, overlap 3330921 AATCGTCTGCCGAAA CGCGTCCGGGG CCGCT CCCCGGGCGCG TTTCGCTACCCATCA MSMEG_3248 3330998 - 3332035 + | ABC transporter branched chain amino acid transport permease MSMEG_3249 3332032 - 3333246 + | branched-chain amino acid ABC transporter, permease protein MSMEG_3250 3333243 - 3334097 + | ABC transporter, ATP-binding protein MSMEG_3251 3334081 - 3334827 + | branched-chain amino acid ABC transporter ATP-binding protein MSMEG_3252 3334948 - 3335274 + | hypothetical protein MSMEG_3253 3336166 - 3335279 - | hypothetical protein TERM 1274 3336212 - 3336270 + r 100 -26.9 -3.73647 | gap 1, opp_overlap 3336221 3336224, overlap 3336221 3336224 CGGCAGGGCGGGGGC CGGCACACAGAACCGGGCCCTCGACTCC GAAC GGAGTTGAGGGCCCGGCTCTTTG-GTCG TTCTTCCTGGCTCAG TERM 1275 3336262 - 3336221 - R 100 -26.7 -2.87132 | opp_overlap 3336221 3336212 3336224, overlap 3336224 GGGGGCCGGCACACA GAACCGGGCCCTCGACTCC GAAC GGAGTTGAGGGCCCGGCTC TTTGGTCGTTCTTCC TERM 1276 3336221 - 3336262 + r 100 -26.7 -3.89131 | opp_overlap 3336221 3336224, overlap 3336212 3336224 GGGGGCCGGCACACA GAACCGGGCCCTCGACTCC GAAC GGAGTTGAGGGCCCGGCTC TTTGGTCGTTCTTCC TERM 1277 3336259 - 3336224 - R 100 -24.8 -3.58726 | opp_overlap 3336224 3336221 3336212, overlap 3336221 GGCCGGCACACAGAA CCGGGCCCTCGACTCC GAAC GGAGTTGAGGGCCCGG CTCTTTGGTCGTTCT TERM 1278 3336224 - 3336259 + r 100 -27 -2.70353 | opp_overlap 3336221 3336224, overlap 3336221 3336212 GGCCGGCACACAGAA CCGGGCCCTCGACTCC GAAC GGAGTTGAGGGCCCGG CTCTTTGGTCGTTCT MSMEG_3254 3336767 - 3336282 - | RDD family protein, putative TERM 1279 3336713 - 3336685 - G 76 -13.7 -3.53343 | overlap 3336688 AAGCGTCGTCCCAAA CCACCCGGCGCCG CTG CGCCGCCGTGCGG CGGATAGCCGGCGGG MSMEG_3255 3337652 - 3336777 - | DoxX subfamily protein, putative MSMEG_3256 3337685 - 3337909 + | mucin-associated surface protein xylB 3337958 - 3339346 + | xylulokinase MSMEG_3258 3339343 - 3339477 + | hypothetical protein MSMEG_3259 3339524 - 3340744 + | acyl-CoA dehydrogenase MSMEG_3260 3340787 - 3341722 + | LysR-family protein transcriptional regulator MSMEG_3261 3341757 - 3342605 + | hypothetical protein MSMEG_3263 3342704 - 3344113 + | xylulose kinase MSMEG_3262 3344886 - 3344098 - | L-xylulose reductase MSMEG_3264 3345905 - 3344883 - | transcriptional regulator MSMEG_3265 3346024 - 3347112 + | arabitol-phosphate dehydrogenase MSMEG_3266 3347124 - 3348557 + | maltose/maltodextrin-binding protein MSMEG_3267 3348569 - 3349522 + | transporter TERM 1280 3349547 - 3349602 + G 71 -11 -3.56558 | gap 1, opp_overlap 3349560 3349561, overlap 3349549 ACAGAACAGAATTGC TGCCGGGCCAGAAGCGGTGGTCCATCG GAT CGGTGG-CCGCCGATGTGGGCCTGGTG TTCTGGTTCGTCTTC TERM 1281 3349549 - 3349600 + G 74 -13.6 -3.34806 | gap 1, opp_overlap 3349560 3349561, overlap 3349547 AGAACAGAATTGCTG CCGGGCCAGAAGCGGTGGTCCATCG GAT CGGTGG-CCGCCGATGTGGGCCTGG TGTTCTGGTTCGTCT MSMEG_3268 3349525 - 3350397 + | ABC transporter, permease protein TERM 1282 3350483 - 3350448 - g 73 -9.7 -3.92324 | opp_overlap 3350460 3350473 TTCGGCAAGACCAAA GCGGTCGACGATCTC TCGGTC GACATCGCCGACGGC GAGTTCTTCGTGATC MSMEG_3269 3350397 - 3351506 + | putative sugar ABC transporter ATP-binding protein MSMEG_3270 3351503 - 3352636 + | SN-glycerol-3-phosphate ABC transporter, ATP-binding protein MSMEG_3271 3352633 - 3354375 + | dihydroxyacetone kinase MSMEG_3272 3354375 - 3354836 + | ribose 5-phosphate isomerase MSMEG_3273 3354888 - 3355973 + | glutamyl aminopeptidase, M42 family protein MSMEG_3274 3356052 - 3356885 + | MerR-family protein transcriptional regulator MSMEG_3275 3357384 - 3358010 + | RNA polymerase sigma factor, sigma-70 family protein MSMEG_3276 3358295 - 3359179 + | integral membrane protein MSMEG_3278 3359219 - 3359566 + | hypothetical protein MSMEG_3277 3360411 - 3359563 - | polyamine ABC transporter integral membrane protein MSMEG_3279 3361229 - 3360408 - | polyamine ABC transporter permease protein MSMEG_3280 3362480 - 3361287 - | polyamine-binding lipoprotein MSMEG_3281 3363814 - 3362546 - | spermidine/putrescine ABC transporter ATP-binding subunit MSMEG_3282 3363710 - 3363892 + | hypothetical protein MSMEG_3283 3365477 - 3364011 - | membrane transport protein MSMEG_3284 3366036 - 3365617 - | transcriptional regulator, MarR family protein MSMEG_3285 3367197 - 3366127 - | 3-isopropylmalate dehydrogenase MSMEG_3286 3367937 - 3367206 - | methyltransferase MSMEG_3287 3368817 - 3367954 - | hydrolase, alpha/beta fold family protein MSMEG_3288 3368990 - 3369637 + | LysM domain-containing protein MSMEG_3289 3369713 - 3370798 + | gp61 protein TERM 1283 3372032 - 3372077 + G 77 -11.8 -3.85698 | gap 3, overlap 3372030 CGAATTGGAGAGCTC GGCAG-CG-CGTGCCCGCTCCCG CGG CGGG-GCGTGCGCGGCGGCCGCC TTTCTGGAGCGCGCG MSMEG_3290 3370884 - 3373658 + | regulatory protein MSMEG_3291 3374081 - 3373908 - | hypothetical protein MSMEG_3292 3374137 - 3374979 + | DNA-binding protein MSMEG_3293 3375185 - 3375012 - | hypothetical protein MSMEG_3294 3375207 - 3375320 + | hypothetical protein MSMEG_3295 3375332 - 3375463 + | hypothetical protein MSMEG_3296 3375472 - 3376029 + | ECF-family protein sigma factor H MSMEG_3297 3376204 - 3377424 + | transcriptional regulator, CadC TERM 1284 3378056 - 3378078 + G 75 -4.7 -4.65895 | opp_overlap 3378053 GAGCATCAACGACCT GGCCATCGC CGAGA GCGACCGCC TTTTTCACTGGGACA MSMEG_3298 3377556 - 3378146 + | response regulator receiver domain-containing protein MSMEG_3300 3379139 - 3380224 + | oxidoreductase, Gfo/Idh/MocA family protein MSMEG_3301 3380231 - 3381091 + | hypothetical protein MSMEG_3302 3381095 - 3381979 + | short-chain dehydrogenase/reductase SDR MSMEG_3303 3382070 - 3383518 + | carboxylic ester hydrolase TERM 1285 3384081 - 3384049 - g 77 -11.3 -3.85817 | gap 1, opp_overlap 3384049 ACCGTCGTGCACAAA CCGAGCGAACGGTG CCCCGC CACCGGTCGC-CGG TTCGCCGAGTTGCTG MSMEG_3304 3383593 - 3384945 + | succinate semialdehyde dehydrogenase MSMEG_3305 3384988 - 3385890 + | hypothetical protein TERM 1286 3386793 - 3386803 + G 72 -8.2 -3.99592 | TGGAGCTCCTGCGCA CCGG TGG CCGG TTTCTGATCGTGGGT MSMEG_3306 3386138 - 3387082 + | zinc-binding alcohol dehydrogenase MSMEG_3308 3388088 - 3388576 + | universal stress protein family protein, putative MSMEG_3309 3388626 - 3389927 + | tryptophan synthase subunit beta MSMEG_3310 3390024 - 3390854 + | integral membrane protein MSMEG_3311 3391146 - 3390856 - | acyl carrier protein TERM 1287 3391729 - 3391698 - g 71 -10.8 -3.61398 | gap 1, opp_overlap 3391700 TCCGCCGGCCAACAA GATCC-TCGGGCCGG GCG CCGGCCTGGTGGATC GTCTGCGCGACATCC MSMEG_3312 3391207 - 3391764 + | hemerythrin HHE cation binding domain-containing protein MSMEG_3313 3392985 - 3391777 - | xylose repressor, putative TERM 1288 3393882 - 3393910 + G 74 -15.9 -2.80492 | overlap 3393879 3393884 TCATGTTCGCGGTGG CGGCGCTGGCCGC GCC GTGGCCCGCGCTG TGGTTGGTGCTGGTG TERM 1289 3393884 - 3393908 + G 72 -14.9 -2.94695 | overlap 3393882 3393879 ATGTTCGCGGTGGCG GCGCTGGCCGC GCC GTGGCCCGCGC TGTGGTTGGTGCTGG MSMEG_3314 3393017 - 3394192 + | transport protein MSMEG_3315 3394488 - 3394195 - | hypothetical protein TERM 1290 3394488 - 3394508 + H 71 -13.9 -2.76189 | opp_overlap 3394472, overlap 3394485 CGACCACCAGCGTCA CCCGCGCCG CAG CGGCGCAGG TGCTTCGCTGCATTG TERM 1291 3394917 - 3394904 - g 70 -3.8 -4.40358 | overlap 3394906 ACGCAGCCCACAAAA GGTC GGGCAG GACC TCGGCGACCTGCTCG dapB 3394773 - 3395795 + | dihydrodipicolinate reductase N-terminus domain-containing protein MSMEG_3316 3397227 - 3395749 - | transporter, major facilitator family protein MSMEG_3318 3398450 - 3397224 - | oxidoreductase MSMEG_3319 3398604 - 3399185 + | repressor protein TERM 1292 3400929 - 3400917 - g 70 -3.3 -4.43844 | TCACCATCGACAAAA TCGCC GAC GGTGA CCCCGTGCCGTTCAG TERM 1293 3401267 - 3401304 + G 100 -24.2 -3.90112 | opp_overlap 3401244 3401257 AACCAGTTGGAGGAT CGCCGCCAGCCCACCA CCACGT TGGAGGGCTGGCGGCG TTTCATTGAGGCCGA MSMEG_3321 3400223 - 3402250 + | ATP/GTP-binding protein MSMEG_3322 3402308 - 3403102 + | hypothetical protein MSMEG_3323 3403263 - 3403796 + | hypothetical protein MSMEG_3324 3403857 - 3404060 + | hypothetical protein TERM 1294 3404085 - 3404114 + T 83 -15.1 -3.25823 | opp_overlap 3404074 CATAGTGCCAGCGCG CTTTCCCGCGG GTGCCGGG CCGCGGGAAAG TTCGTGTCAGCCGGG MSMEG_3325 3404624 - 3404121 - | hypothetical protein MSMEG_3326 3406022 - 3404832 - | carboxylate-amine ligase TERM 1295 3406390 - 3406368 - R 72 -7 -4.26076 | opp_overlap 3406375 3406379 CGAGGGCGACGAAAA CGATACTGCT GGT AGCCATATCG GCTCCTTGTGATTGT MSMEG_3327 3406639 - 3406544 - | hypothetical protein TERM 1296 3406752 - 3406768 + r 83 -2.2 -5.22312 | GCGTGCGCGCGGGTA CGGTCG AGTTC TGATCG TTTTTTCGTCTCGGT MSMEG_3328 3407374 - 3406973 - | hypothetical protein TERM 1297 3407266 - 3407284 + g 73 -7.4 -4.15044 | TCTCTTCGGCTGCTA CGTGACGA TGT TCGTTGCG TTTGTTACGCGCCAC MSMEG_3329 3407699 - 3407520 - | hypothetical protein MSMEG_3330 3407924 - 3407751 - | hypothetical protein MSMEG_3331 3408447 - 3407950 - | hypothetical protein MSMEG_3332 3408671 - 3409429 + | transcriptional regulator, TetR family protein TERM 1298 3410771 - 3410751 - T 70 -8.1 -4.00468 | overlap 3410744 ATGAGAACGGACAAA GGCGGCGGC ATT GCCGCGGTC AATGTCCCGCGAGAA MSMEG_3334 3411365 - 3411240 - | hypothetical protein MSMEG_3335 3412441 - 3413250 + | transcriptional regulator, IclR family protein, putative MSMEG_3336 3414058 - 3413291 - | hydrolase TERM 1299 3413453 - 3413442 - G 73 -7.2 -4.14739 | TCACGTACCGCAAAA GCCG TGAT CGGC TGAGTCGTCTCACTC MSMEG_3337 3414412 - 3414146 - | hypothetical protein TERM 1300 3415336 - 3415314 - g 70 -12.6 -3.29511 | GGGATCTCTTCAGAA CCGCCTGCGG TTC CCGCTGGCAG TGGCGCGGGCAGTCC MSMEG_3338 3414655 - 3415773 + | oxidoreductase, FAD/FMN-binding MSMEG_3339 3416414 - 3416136 - | hypothetical protein TERM 1301 3416363 - 3416376 + g 71 -9.5 -3.75629 | GTAGGTGGCGCTTGC CGCCG GTGC CGGCG TTTGCCTTGCCGATG MSMEG_3340 3416989 - 3416615 - | hypothetical protein MSMEG_3341 3418218 - 3417007 - | transposase IS116/IS110/IS902 MSMEG_3342 3418987 - 3419235 + | hypothetical protein TERM 1302 3419958 - 3419908 - g 72 -13.3 -3.14344 | gap 1, opp_overlap 3419920, overlap 3419910 3419918 CATCTTCGGCAGCAA GACGG-TCAAAGCCCTTCCCGACG GCAC CGTCGGGGAGATCTTCGATCCGGC AGATTTCGCGGTGTC TERM 1303 3419956 - 3419910 - g 77 -14.5 -3.13403 | gap 1, opp_overlap 3419920, overlap 3419908 3419918 TCTTCGGCAGCAAGA CGG-TCAAAGCCCTTCCCGACG GCAC CGTCGGGGAGATCTTCGATCCG GCAGATTTCGCGGTG MSMEG_3343 3419267 - 3420439 + | hypothetical protein MSMEG_3344 3421532 - 3420444 - | hypothetical protein MSMEG_3345 3422429 - 3421734 - | transcriptional regulator, GntR family protein MSMEG_3346 3422532 - 3423314 + | putative hydroxyacid aldolase TERM 1304 3423405 - 3423378 - g 76 -13.4 -3.50447 | overlap 3423359 CGAACCTCGACACAA TCGTCGACCTGC TGCG GCAGGCCGCCGA CCAGAACGCCGACCT MSMEG_3347 3423311 - 3424108 + | nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase TERM 1305 3424389 - 3424415 + G 84 -15.9 -3.41051 | GCCACCCTCGACGGC CGGGCCGACCT CGCTC AGGTCGGCTCG TTGTACTCGGCGTCG MSMEG_3348 3424110 - 3425210 + | extracellular solute-binding protein, family protein 7 MSMEG_3349 3425207 - 3425725 + | trap dicarboxylate transporter, dctq subunit, putative MSMEG_3350 3425722 - 3427083 + | TRAP transporter, DctM-like membrane protein MSMEG_3351 3427103 - 3427399 + | hypothetical protein MSMEG_3352 3428096 - 3427593 - | hypothetical protein MSMEG_3353 3428505 - 3428870 + | hypothetical protein MSMEG_3354 3429446 - 3430054 + | TetR family protein transcriptional regulatory protein MSMEG_3355 3430051 - 3430938 + | hypothetical protein MSMEG_3356 3431015 - 3431353 + | hypothetical protein MSMEG_3357 3431438 - 3432004 + | metal-dependent phosphohydrolase MSMEG_3358 3432244 - 3432795 + | YaeQ protein MSMEG_3359 3433116 - 3433571 + | cis-3-chloroacrylic acid dehalogenase, putative TERM 1306 3433598 - 3433646 + T 87 -18.2 -2.6933 | gap 1, opp_overlap 3433589, overlap 3433598 3433599 CAGAAGCAGGCTTCC CGTGACAGCGCGGACTGCTCCTC TCGA GAGGAGCAGT-CGCGCTGAGTCG CCTTTTTCTGCGCGG TERM 1307 3433598 - 3433648 + T 100 -12.8 -4.82901 | gap 3, opp_overlap 3433589, overlap 3433598 3433599 CAGAAGCAGGCTTCC CGTGAC--AGCGCGGACTGCTCCTC TCGA GAGGAGCAGT-CGCGCTGAGTCGCC TTTTTCTGCGCGGGA TERM 1308 3433599 - 3433647 + T 91 -16.3 -3.49419 | gap 3, overlap 3433598 3433598 AGAAGCAGGCTTCCC GTGAC--AGCGCGGACTGCTCCTC TCGA GAGGAGCAGT-CGCGCTGAGTCGC CTTTTTCTGCGCGGG MSMEG_3360 3434278 - 3433691 - | transcriptional regulator, putative MSMEG_3361 3435112 - 3434447 - | hypothetical protein MSMEG_3362 3436148 - 3435357 - | enoyl-CoA hydratase TERM 1309 3436612 - 3436588 - g 81 -7.1 -4.56597 | overlap 3436573 GTGGTCGTCGAAAAA GAACCTCTCGA CGC CCGACAGGCTC GCGGGCTACGCGAAG MSMEG_3363 3436349 - 3436951 + | regulatory protein, TetR MSMEG_3364 3436955 - 3437581 + | RhtB family protein transporter MSMEG_3365 3437657 - 3438670 + | transcriptional regulator, AraC family protein MSMEG_3366 3438709 - 3439404 + | isonitrile hydratase, putative MSMEG_3367 3439442 - 3440194 + | short-chain dehydrogenase/reductase SDR MSMEG_3368 3440370 - 3440233 - | hypothetical protein MSMEG_3369 3440359 - 3441657 + | putative transport protein MSMEG_3370 3441702 - 3441911 + | hypothetical protein TERM 1310 3442760 - 3442800 + T 89 -19.7 -2.5664 | overlap 3442760 GGGCGTTCGGATCCC GTCTCCTGCGGCGGATCGA GAT TCGCTCCGCCGCAGGTGAA CTTGATCGTTAGGTG TERM 1311 3442760 - 3442801 + T 100 -19.5 -3.2827 | gap 1, overlap 3442760 GGGCGTTCGGATCCC G-TCTCCTGCGGCGGATCGA GAT TCGCTCCGCCGCAGGTGAAC TTGATCGTTAGGTGA MSMEG_3372 3443147 - 3442809 - | transcriptional regulator, ArsR family protein MSMEG_3373 3443225 - 3444496 + | major facilitator superfamily protein MFS_1 MSMEG_3374 3445529 - 3444504 - | hypothetical protein MSMEG_3375 3445911 - 3447587 + | alcohol dehydrogenase MSMEG_3376 3447605 - 3448519 + | beta-lactamase MSMEG_3377 3449362 - 3448679 - | hypothetical protein TERM 1312 3448916 - 3448927 + g 77 -3.6 -4.72272 | overlap 3448905 GCGCTCTTCGACCGT GCCG AAGC TGGC TTTTTCCTGGAACAG TERM 1313 3450316 - 3450374 + G 72 -13.9 -3.24 | gap 2, overlap 3450320 3450367 TCTTCCGCTGGTGTG CGACGTCGCCGACGAGCAGGCGACCACGG CTG CCATGG-CGCGTGTTCGT-GGCGAATTCG GTTTTCTGGACTCGT MSMEG_3379 3450104 - 3450889 + | 2-deoxy-D-gluconate 3-dehydrogenase MSMEG_3378 3452058 - 3450886 - | beta-lactamase MSMEG_3380 3452237 - 3452626 + | pyridoxamine 5'-phosphate oxidase-related, FMN-binding MSMEG_3381 3453251 - 3452634 - | acyl carrier protein phosphodiesterase TERM 1314 3452711 - 3452697 - G 73 -7 -4.14243 | opp_overlap 3452701 GACCGGACGGTAAAA GTCGCC TTC GGCGGC CGGTGGTTCGCTATG MSMEG_3382 3453339 - 3453689 + | transcriptional regulator, ArsR family protein MSMEG_3383 3453984 - 3453838 - | hypothetical protein TERM 1315 3454030 - 3454015 - R 75 -3.2 -4.77165 | CGTGCGACAAGAAAA GCGC AGGCAATA GCGC AAGGGCGTAGCCAAC MSMEG_3384 3454998 - 3454069 - | isoflavone reductase MSMEG_3385 3455480 - 3454995 - | hypothetical protein MSMEG_3386 3456817 - 3455477 - | shikimate transporter MSMEG_3387 3458378 - 3456825 - | aldehyde dehydrogenase (NAD) family protein MSMEG_3388 3459635 - 3458388 - | S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase MSMEG_3389 3459807 - 3461426 + | putative acetolactate synthase MSMEG_3390 3461441 - 3462214 + | enoyl-CoA hydratase TERM 1316 3462602 - 3462620 + G 75 -16 -2.84634 | TCAGCTACCCGGCCC TCCGCGCG ATC CGCGCGGA TGTGATCCTGTGCAC MSMEG_3391 3462268 - 3463464 + | L-carnitine dehydratase/bile acid-inducible protein F MSMEG_3392 3463461 - 3464594 + | acyl-CoA dehydrogenase domain-containing protein MSMEG_3393 3464591 - 3465574 + | putative acyl-CoA dehydrogenase MSMEG_3394 3465586 - 3466005 + | cupin domain-containing protein MSMEG_3395 3466032 - 3466808 + | short chain dehydrogenase MSMEG_3396 3467594 - 3466818 - | transcriptional regulator, IclR family protein MSMEG_3397 3468964 - 3467633 - | acetylornithine deacetylase MSMEG_3398 3470343 - 3469021 - | integral membrane transport protein MSMEG_3400 3471648 - 3473846 + | glutamyl-tRNA(Gln) amidotransferase subunit A MSMEG_3401 3473843 - 3474640 + | LamB/YcsF family protein MSMEG_3402 3474657 - 3476018 + | cytosine permease, putative amiF 3476015 - 3477016 + | formamidase MSMEG_3404 3477089 - 3478327 + | HNH endonuclease domain-containing protein MSMEG_3405 3479892 - 3478441 - | methylenomycin A resistance protein MSMEG_3406 3479977 - 3480570 + | putative transcriptional regulator, TetR family protein MSMEG_3407 3481794 - 3480577 - | epoxide hydrolase MSMEG_3408 3481863 - 3482456 + | hypothetical protein MSMEG_3409 3483530 - 3482577 - | oxidoreductase MSMEG_3410 3484115 - 3483534 - | transcriptional regulator, TetR family protein TERM 1317 3483974 - 3483990 + g 77 -15.1 -3.22476 | TCAGTGACGGCCAAC GCCGGCG GAT CGCCGGC TTCGTGGTCCCTGCT MSMEG_3411 3484243 - 3484680 + | MOSC domain-containing protein MSMEG_3412 3485550 - 3484684 - | polysaccharide deacetylase family protein MSMEG_3414 3487176 - 3486061 - | hypothetical protein MSMEG_3415 3487270 - 3487755 + | MarR-family protein regulatory protein MSMEG_3416 3487878 - 3488744 + | protein of unknown function DUF6, transmembrane, putative MSMEG_3417 3489272 - 3488769 - | hypothetical protein MSMEG_3418 3489784 - 3489356 - | hypothetical protein MSMEG_3419 3490839 - 3489877 - | hypothetical protein MSMEG_3420 3491967 - 3491197 - | gluconate 5-dehydrogenase TERM 1318 3491261 - 3491230 - G 72 -13.8 -3.14132 | GCCCCCGTCGACGAA CAGCACCTGCCCAT TCAC ATAGGCAGATGCCG GCGAGGCGAGGAAGA MSMEG_3421 3493388 - 3491964 - | inner membrane metabolite transport protein YdfJ TERM 1319 3493176 - 3493136 - G 100 -15.6 -4.67982 | gap 2, overlap 3493139 3493161 GGGCACCGAAGAAAA GAC-CTC-CGACCGGCCTCG CGA CGAAGCCGATCGCGAGCGTC GCGAGGCTGGCGACC TERM 1320 3493172 - 3493139 - G 75 -16.1 -2.96609 | gap 1, overlap 3493136 3493161 CACCGAAGAAAAGAC CTC-CGACCGGCCTCG CGA CGAAGCCGATCGCGAG CGTCGCGAGGCTGGC TERM 1321 3493772 - 3493804 + G 82 -13.4 -3.68351 | gap 1, overlap 3493772 CCTGCTCCCCCCGCA G-CGGTTCGCCGGCG ACCA TGCCGGCGATCCGGC TTTCCGTCGTACCGC MSMEG_3422 3493671 - 3494702 + | D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding MSMEG_3423 3494759 - 3495541 + | IclR family protein regulator MSMEG_3424 3495569 - 3496423 + | transcriptional regulator, MerR family protein MSMEG_3425 3497039 - 3496425 - | TetR-family protein transcriptional regulator TERM 1322 3496947 - 3496973 + g 93 -17.4 -3.65522 | opp_overlap 3496949 3496951 TCCGGTGGTCGTCAA CAGATCCTCGGC GGC GTCGAGGATCTG TTGTTCGCGTAGATC MSMEG_3426 3497915 - 3497064 - | short chain dehydrogenase TERM 1323 3497978 - 3497932 - H 79 -10.5 -4.07687 | gap 1 ATGTCCTCTCGAAAA CTTACTCAACACAGTGTCAAAT AATA ATCT-ACACCGTGTCAAGTAAG TCTTTCCCGAACGTC MSMEG_3427 3498088 - 3499005 + | metal dependent hydrolase MSMEG_3428 3499056 - 3499430 + | hypothetical protein TERM 1324 3500016 - 3500045 + G 100 -11.4 -4.84359 | overlap 3500018 CGGACGTCTTCGATC GCCGCCGCAACG CCTTGA CGTTGTGGCGAC TTTTTCTGGCGATCG TERM 1325 3500432 - 3500446 + G 70 -4.2 -4.49314 | overlap 3500411 CCGGGAATTTGGAAC GGTTCG ATT TGGACC TTGTTTTTCGTACTC MSMEG_3429 3499988 - 3501115 + | O-acyl transferase MSMEG_3430 3501227 - 3501832 + | SAM-dependent methyltransferase MSMEG_3431 3502136 - 3501834 - | choline dehydrogenase MSMEG_3433 3502304 - 3503770 + | IS1549, transposase MSMEG_3432 3505195 - 3503726 - | choline dehydrogenase TERM 1326 3504073 - 3504053 - G 72 -9 -4.03234 | gap 1, opp_overlap 3504065, overlap 3504054 CGTGCCGTACAGAAA CCAC-GCCG AAGC CGGCAGTGG GAACCGCTCGGCGGT MSMEG_3434 3505505 - 3506134 + | peptidyl-prolyl cis-trans isomerase domain-containing protein MSMEG_3435 3506198 - 3506590 + | hypothetical protein MSMEG_3436 3506616 - 3507194 + | hypothetical protein MSMEG_3437 3508558 - 3507206 - | putative esterase family protein MSMEG_3438 3509057 - 3508887 - | hypothetical protein MSMEG_3439 3508893 - 3509048 + | hypothetical protein TERM 1327 3510259 - 3510239 - g 75 -10.4 -4.06419 | gap 1 TCGTTGTACAAAGAA CGCGCCTCG ATCT CG-GGCGCG GAGGTCGGATGTCAG sdaA 3509255 - 3510631 + | L-serine ammonia-lyase MSMEG_3441 3511171 - 3510665 - | hypothetical protein MSMEG_3442 3511367 - 3512173 + | cyclohexadienyl dehydratase MSMEG_3443 3512255 - 3512413 + | hypothetical protein MSMEG_3444 3513934 - 3512435 - | choline dehydrogenase MSMEG_3445 3514040 - 3515053 + | 5,10-methylenetetrahydromethanopterin reductase MSMEG_3446 3515287 - 3515433 + | hypothetical protein MSMEG_3447 3515585 - 3516229 + | two-component system response regulator MSMEG_3448 3517415 - 3516234 - | two-component system sensor kinase TERM 1328 3516449 - 3516471 + g 72 -13.4 -3.18681 | overlap 3516448 GTTCGGCCTCGATCC GCACGCGCGT AGC GTGCGCGTGC TTGGTCGCGTTGGCC MSMEG_3449 3518267 - 3517620 - | DNA-binding protein dehII 3518377 - 3519072 + | haloacid dehalogenase, type II MSMEG_3451 3519946 - 3519095 - | short-chain dehydrogenase/reductase TERM 1329 3520003 - 3519975 - H 74 -13.3 -3.17723 | opp_overlap 3519969 GTAGGTTTAACGGAA TGTGTTCCGCTTA CCT TAAGTGGAACACA TTCCGGATAGCAACT MSMEG_3452 3520041 - 3520619 + | TetR family protein transcriptional regulator TERM 1330 3520939 - 3520928 - g 71 -2.2 -4.58283 | overlap 3520929 GAACGCCCCGAAAAA GCCT GCGG AGAC CTGGCAGGGACATCC MSMEG_3454 3520758 - 3521030 + | hypothetical protein MSMEG_3453 3521151 - 3521023 - | hypothetical protein TERM 1331 3521281 - 3521233 - g 80 -16.7 -3.14132 | gap 2 GGTGCGGCTGACCAA GACCCGG-C-CGGACGCCGCGGC GGCAT GCCGAGGCGGCCATGTCCGGGTC AACGACCGCGTGGCG TERM 1332 3521411 - 3521390 - g 81 -12.3 -3.91897 | gap 1 CGCGTCATCCAGAAA CGG-GTCGGC GCG GCCGACGCCG TGACCTGCTACCTCG hslR 3521165 - 3521548 + | heat shock protein 15 MSMEG_3456 3521997 - 3521554 - | hydroxylaminobenzene mutase MSMEG_3457 3523492 - 3522131 - | DoxD family protein/pyridine nucleotide-disulfide oxidoreductase MSMEG_3458 3524395 - 3523559 - | hypothetical protein MSMEG_3459 3526022 - 3524499 - | hypothetical protein TERM 1333 3525471 - 3525456 - G 84 -4.6 -5.0133 | GACGTTCTGAAAAAA GAACGG TGTG CCGATC CGGTTGAGCACCCGG TERM 1334 3526322 - 3526297 - H 71 -11.8 -3.28791 | opp_overlap 3526289 AGCCTGCGCGCAGAA GCGGTCGGCC GACAAT GGCCGAACGC GGCTCGCTCTTGCGC MSMEG_3460 3526436 - 3526876 + | ferric uptake regulation protein TERM 1335 3528648 - 3528622 - g 74 -13.7 -3.29144 | overlap 3528610 GGACGGTGGCTACAA CGTCACGGTGC CGTTC GCACCGGGACG CACGGACGCGAGCCA katG 3526916 - 3529162 + | catalase/peroxidase HPI TERM 1336 3529175 - 3529232 + F 77 -14.7 -2.79098 | gap 1, overlap 3529176 TAAACCGAGAACTGG TCACGCTCCATACGGCGAGGCCCGCGGG ATA CCCGCGGGCATCGCTGTGCGTCG-GTGC TCATTGGTGAGTCGG MSMEG_3462 3529328 - 3529993 + | oxidoreductase MSMEG_3463 3530907 - 3529999 - | putative esterase MSMEG_3464 3532043 - 3531027 - | alcohol dehydrogenase MSMEG_3465 3533981 - 3532122 - | acyl-CoA synthetase MSMEG_3466 3534223 - 3534056 - | hypothetical protein MSMEG_3468 3534240 - 3535796 + | AMP-binding enzyme MSMEG_3467 3536193 - 3535783 - | hypothetical protein MSMEG_3469 3536777 - 3536190 - | TetR family protein transcriptional regulator TERM 1337 3536838 - 3536799 - H 74 -11.7 -3.65224 | gap 1 ATCGTAGGGGAATAA CAGTCACTGACATGGAGT TGCAT ACTG-ATGTCAGTGACTG ACACCGACCGGGTGC MSMEG_3470 3536879 - 3537790 + | NAD-dependent epimerase/dehydratase MSMEG_3471 3537873 - 3539153 + | hypothetical protein MSMEG_3472 3539153 - 3540352 + | hypothetical protein upp 3540363 - 3540992 + | uracil phosphoribosyltransferase MSMEG_3474 3541055 - 3541705 + | integral membrane protein MSMEG_3475 3542491 - 3541709 - | hypothetical protein TERM 1338 3542336 - 3542321 - G 82 -6 -4.77036 | CGTCAGGACCAAAAA CGTCGC CAGC GCGCCG ATCTCCAGTGTCCGC MSMEG_3476 3543670 - 3542549 - | peptidase, M48 family protein TERM 1339 3542775 - 3542806 + g 72 -9.4 -4.01853 | gap 1, overlap 3542762 3542801 3542803 TCCCGGTAGTGGCGC GCCGCCTCGC-CGAT GTC ATCGCGCAACGCGGC TTTGTCGTCGTCTTC TERM 1340 3543723 - 3543735 + r 74 -4.7 -4.57569 | ACGGACGGCGGACGA GGGGC GGT GCCAC TTTTTGCCGCGGTGC MSMEG_3477 3544417 - 3543755 - | inv protein MSMEG_3478 3544716 - 3545447 + | tena/thi-4 family protein TERM 1341 3545522 - 3545488 - T 100 -20.1 -3.26947 | opp_overlap 3545478 GAACCGGGATACGAA GACCCTCACCCACGC GCGAT GAGTGGGTGAGGGTC TGCGGTCGGTATTCG tpx 3546068 - 3545574 - | thiol peroxidase TERM 1342 3546112 - 3546088 - H 71 -7.7 -4.09511 | overlap 3546075 AACAGTCTGTCAAAA CCCGGGCCGGT TCC AACAGTCCGGG GTGATAGCGGGCGTC MSMEG_3480 3546179 - 3547108 + | streptomycin 6-kinase (streptidine kinase) (Streptomycin6-phosphotransferase) (APH(6)) MSMEG_3481 3548174 - 3547122 - | O-succinylbenzoate synthase TERM 1343 3547896 - 3547874 - G 74 -12.6 -3.65351 | overlap 3547875 CCACGGGCACCGAAA CCGCGACCGG TAC CCGGCCGCGC ACCGGGTCCGGCCAG TERM 1344 3547895 - 3547875 - G 74 -16.1 -2.78996 | overlap 3547874 CACGGGCACCGAAAC CGCGACCGG TAC CCGGCCGCG CACCGGGTCCGGCCA MSMEG_3482 3548221 - 3548475 + | hypothetical protein MSMEG_3483 3548528 - 3549193 + | mosc domain-containing protein MSMEG_3484 3549722 - 3549195 - | cupin domain-containing protein MSMEG_3485 3550351 - 3549755 - | putative ECF sigma factor RpoE1 katA 3551805 - 3550348 - | catalase KatA MSMEG_3487 3552478 - 3551822 - | metal-dependent phosphohydrolase MSMEG_3488 3552713 - 3553684 + | transcriptional regulator, AraC family protein MSMEG_3489 3554375 - 3553689 - | hypothetical protein MSMEG_3490 3555722 - 3554508 - | putative membrane acyltransferase MSMEG_3491 3556586 - 3556086 - | hypothetical protein MSMEG_3492 3556736 - 3557890 + | phosphodiesterase MSMEG_3493 3557926 - 3558267 + | putative secreted protein TERM 1345 3558566 - 3558536 - g 72 -8.9 -4.05004 | gap 1 CGACTACAAGAACAA GCCGCCGCACGTCC AGCA GGCCGCGCG-CGAC CGCATCCACTGGTTC MSMEG_3494 3558309 - 3558770 + | putative secreted protein TERM 1346 3558783 - 3558820 + F 93 -16.3 -3.84406 | overlap 3558786 TAGCAACCGGCCTTC GCACTCCGCCTGTCAGC GCTC GCTGGCAGGCGGAGTCA TTGTTATGGTCCCCG TERM 1347 3558786 - 3558817 + F 100 -22.4 -3.00003 | overlap 3558783 CAACCGGCCTTCGCA CTCCGCCTGTCAGC GCTC GCTGGCAGGCGGAG TCATTGTTATGGTCC MSMEG_3495 3559120 - 3559596 + | MmpS5 protein MSMEG_3496 3559593 - 3562502 + | MmpL4 protein MSMEG_3497 3563264 - 3562524 - | transcriptional regulator, ArsR family protein MSMEG_3498 3563614 - 3563733 + | hypothetical protein MSMEG_3499 3563799 - 3564401 + | hypothetical protein TERM 1348 3564463 - 3564424 - f 74 -13 -3.28924 | gap 1, opp_overlap 3564437, overlap 3564425 CACTGGTGCGCAGAA CGCACGATCACATCCGATA ACG TCTCGG-TGTGATCGTGCT CCTGCCTCCATCGGA TERM 1349 3564462 - 3564425 - f 81 -16.5 -2.57211 | gap 1, opp_overlap 3564437, overlap 3564424 ACTGGTGCGCAGAAC GCACGATCACATCCGATA ACG TCTCGG-TGTGATCGTGC TCCTGCCTCCATCGG TERM 1350 3564515 - 3564485 - g 74 -13.9 -3.27022 | TCCATCGGAGACCAA GCGCACAGGCGGG GACGG CCCGCCGCTGCGC CTGGACAACTTGACC MSMEG_3500 3564453 - 3565199 + | hypothetical protein MSMEG_3501 3565700 - 3565323 - | hypothetical protein MSMEG_3502 3565749 - 3565904 + | hypothetical protein TERM 1351 3566240 - 3566267 + G 79 -15.6 -3.27923 | AGGCCTGGCCGCCAC CGCGGTGATCAG CTCA CTGCTCACCGCG TTCGTCGTGTTCACG MSMEG_3503 3566211 - 3566756 + | hypothetical protein MSMEG_3504 3566848 - 3567099 + | hypothetical protein MSMEG_3505 3567077 - 3568549 + | 6-aminohexanoate-cyclic-dimer hydrolase MSMEG_3506 3568572 - 3569969 + | putative amino acid decarboxylase, pyridoxal-dependent protein MSMEG_3507 3570092 - 3570985 + | fructose-1,6-bisphosphate aldolase MSMEG_3508 3571016 - 3571939 + | hydrolase, alpha/beta hydrolase fold family protein TERM 1352 3572460 - 3572487 + G 80 -16.4 -3.21099 | gap 1 CGGTGACACCGTGTT CGTCGACCA-CGC GGG GCGGTGGTCGACG TTCGTGATCCCCGGG MSMEG_3509 3572011 - 3572664 + | hypothetical protein TERM 1353 3572950 - 3572968 + G 74 -12.4 -3.62522 | TCTGCTCTGTGCGGG CGCGTCGG CGC TCGACGCG TTGTTCCCGGGCTTC MSMEG_3511 3572774 - 3574159 + | hydroxylase MSMEG_3510 3575241 - 3574156 - | ISMsm2, transposase MSMEG_3512 3576576 - 3575284 - | competence damage-inducible protein A TERM 1354 3575403 - 3575436 + g 71 -3 -4.65895 | gap 1 TGATCGACGCACCCT CCGCGC-GCACAGCG AAACA CACTGTGCCGACCGG TTTTTCCGTGGAACC MSMEG_3513 3577834 - 3576626 - | hypothetical protein TERM 1355 3577788 - 3577760 - G 74 -14.5 -3.06796 | overlap 3577767 TTCGATGTCACCGAA CGCGAAACGCGCC AGC AGCGCGATCCGCG TCCAGTCGTCGTCGG MSMEG_3514 3578115 - 3577888 - | hypothetical protein MSMEG_3515 3578910 - 3578173 - | 3-alpha-(or 20-beta)-hydroxysteroid dehydrogenase MSMEG_3517 3580770 - 3580099 - | HAD-superfamily protein subfamily protein IB hydrolase MSMEG_3518 3580892 - 3581272 + | hypothetical protein MSMEG_3519 3581377 - 3582507 + | oxidoreductase, 2-nitropropane dioxygenase family protein TERM 1356 3582511 - 3582568 + F 93 -18 -3.53343 | opp_overlap 3582529, overlap 3582512 3582524 3582529 GCCAGCGTGTAGCAC GCCCCGTAGGCG-ACAAAAGGCTGCGAG TTCT CTCGCAGCCTTTTGTGTGTCTG-GGGTC TTTCGCGCCGCCGTT TERM 1357 3582512 - 3582566 + F 100 -19.5 -3.34398 | gap 1, opp_overlap 3582529, overlap 3582511 3582524 3582529 CCAGCGTGTAGCACG CCCCGTAGGCGACAAAAGGCTGCGAG TTCT CTCGCAGCCTTTTGT-GTGTCTGGGG TCTTTCGCGCCGCCG TERM 1358 3582524 - 3582555 + F 100 -21.8 -3.00766 | opp_overlap 3582529, overlap 3582512 3582511 3582529 ACGCCCCGTAGGCGA CAAAAGGCTGCGAG TTCT CTCGCAGCCTTTTG TGTGTCTGGGGTCTT TERM 1359 3582550 - 3582529 - f 100 -15.9 -4.4009 | opp_overlap 3582529 3582524 3582512 3582511 CCGTAGGCGACAAAA GGCTGCGAG TTCT CTCGCAGCC TTTTGTGTGTCTGGG TERM 1360 3582529 - 3582550 + F 100 -15.9 -4.64844 | opp_overlap 3582529, overlap 3582524 3582512 3582511 CCGTAGGCGACAAAA GGCTGCGAG TTCT CTCGCAGCC TTTTGTGTGTCTGGG TERM 1361 3582976 - 3583009 + G 83 -14.6 -3.55761 | opp_overlap 3582967 3582968 GGAGAAGGCCGACTC CGCCGACG-CGGTGCG CGAA CGCGCCGGCG-CGGCG TTTCAGCGCTGGATC MSMEG_3520 3582635 - 3583222 + | TetR-family protein transcriptional regulator TERM 1362 3583370 - 3583320 - g 70 -12.5 -3.32343 | gap 1 CGTACAGGTCGAGAA CCGCACGCTGGCGAA-GGTCCGCG GCGA CAAGGACCATCCGGCATCGCGCGG CTACACGTGCAACAA TERM 1363 3584035 - 3583977 - g 74 -14.5 -3.08679 | overlap 3583975 3584034 GTTTCTCACCCAACA CGTCCACGGCGCCGACGCCGTACGCG-AG GTG CTGCGCG-ACGTCGACATCGCCGAGAACG CACGGCGCTGCGGCG MSMEG_3521 3583219 - 3585468 + | molybdopterin oxidoreductase MSMEG_3522 3585981 - 3585553 - | dopamine receptor D4 TERM 1364 3586426 - 3586471 + Gr 91 -17.7 -3.28712 | gap 1, opp_overlap 3586420 3586418 3586459, overlap 3586423 3586427 TCAAGGAGATCTCGT TGCG-CAGCGACGTCTTCTCCA GCC TGGAGAAGACCGCGCTGCCGCG TTATCCCGAAGGGAC TERM 1365 3586427 - 3586470 + Gr 89 -19 -2.57132 | gap 1, opp_overlap 3586420 3586418 3586459, overlap 3586423 3586426 CAAGGAGATCTCGTT GCG-CAGCGACGTCTTCTCCA GCC TGGAGAAGACCGCGCTGCCGC GTTATCCCGAAGGGA MSMEG_3523 3587847 - 3587428 - | hypothetical protein MSMEG_3524 3586215 - 3587507 + | linalool 8-monooxygenase MSMEG_3525 3587930 - 3588706 + | transcriptional regulator, XRE family protein MSMEG_3526 3588785 - 3589417 + | hypothetical protein MSMEG_3527 3589470 - 3590201 + | putative HTH-type transcriptional regulator MSMEG_3529 3590198 - 3590848 + | fatty acid hydroxylase MSMEG_3528 3591611 - 3590832 - | ErfK/YbiS/YcfS/YnhG family protein MSMEG_3530 3592342 - 3591737 - | hypothetical protein MSMEG_3531 3593796 - 3592366 - | hypothetical protein MSMEG_3533 3593962 - 3595527 + | di-/tripeptide transporter MSMEG_3532 3596474 - 3595524 - | serine/threonine dehydratase family protein TERM 1366 3596999 - 3596945 - g 95 -17.1 -3.74872 | ACCGACTGGACCAAA CGCGCC-GTCCCCGACCGGCTCCGCGC CGC GCTCGACGC-GGTCGCGGACCGGCACG CCGAACGAATCCGCT MSMEG_3534 3596576 - 3597016 + | 4-hydroxybenzoyl-CoA thioesterase speB 3597069 - 3598112 + | agmatinase TERM 1367 3598520 - 3598554 + G 72 -8.7 -4.0156 | CTGTCTATCTCGTCG CCACGGTCGC-AACG GCTTTCG CGTTCGCG-CCGTGG TTCTTCTTCGTCTGC MSMEG_3536 3598192 - 3600066 + | sugar transport protein MSMEG_3537 3600074 - 3600313 + | hypothetical protein MSMEG_3538 3601186 - 3600326 - | cyclopropane-fatty-acyl-phospholipid synthase 1 MSMEG_3539 3601197 - 3601316 + | hypothetical protein MSMEG_3540 3601386 - 3601607 + | hypothetical protein MSMEG_3541 3602810 - 3601917 - | cytochrome C biogenesis protein transmembrane region MSMEG_3542 3601604 - 3601975 + | hypothetical protein TERM 1368 3602206 - 3602160 - GT 71 -13.1 -2.95884 | gap 1, opp_overlap 3602171, overlap 3602152 GTAGTAACCGACATA CGCAC-CTACCAGGATCAGCAG TGCT CCGCTGATCCTGTTGGCGTACG GCAGGATCCGGCGCA MSMEG_3543 3603345 - 3602815 - | soluble secreted antigen MPT53 MSMEG_3544 3604370 - 3603465 - | hypothetical protein MSMEG_3545 3605046 - 3604423 - | hypothetical protein MSMEG_3546 3605339 - 3606676 + | hypothetical protein TERM 1369 3606962 - 3606978 + F 74 -5.1 -4.57569 | TGATTGTTGACAATC CTACCGA CCC TCGTTAG TTTTTCGGGCAATCC ehuB 3607110 - 3607949 + | ectoine/hydroxyectoine ABC transporter solute-binding protein ehuC 3607960 - 3608673 + | ectoine/hydroxyectoine ABC transporter, permease protein EhuC ehuD 3608670 - 3609350 + | ectoine/hydroxyectoine ABC transporter, permease protein EhuD ehuA 3609381 - 3610136 + | ectoine/hydroxyectoine ABC transporter, ATP-binding protein MSMEG_3551 3610192 - 3611469 + | linalool 8-monooxygenase MSMEG_3552 3612708 - 3611488 - | hypothetical protein TERM 1370 3611884 - 3611916 + g 85 -16.4 -3.60296 | gap 2, opp_overlap 3611880 3611901 CAGCTGAGAGACTCC CCGGTG-GA-GCGGCG AAA CGCCGCATCGCACCGG TTTCAGATCCGCGTA TERM 1371 3612402 - 3612365 - G 82 -11.4 -4.11484 | gap 2, opp_overlap 3612366 3612378 3612396 GCCAACTCGCGAAAA GCCGCCCACAGCACCGAG AAAT CCCGGTG-TATGG-CGGC GGTCAGTTTCTCCGA hydA 3612964 - 3614376 + | dihydropyrimidinase MSMEG_3554 3614417 - 3615436 + | N5,N10-methylene- tetrahydromethanopterin reductase TERM 1372 3615665 - 3615679 + G 82 -11.4 -4.21194 | opp_overlap 3615646 CAGGCGGTTCCTGGC CCGCTC ACC GAGCGG TTTTCCGTACTCGCC MSMEG_3555 3615464 - 3616312 + | hydrolase MSMEG_3556 3616326 - 3617897 + | integral membrane transporter MSMEG_3557 3619402 - 3617957 - | amino acid permease-associated region TERM 1373 3618849 - 3618819 - G 84 -19.8 -2.94218 | ATGCCCGACGACAGA CCGTGATCGCCGCC GCG GGCGACGATCACGA GATCCAGCACCAGAA MSMEG_3558 3620492 - 3619557 - | carboxymethylenebutenolidase MSMEG_3559 3620574 - 3621500 + | short chain dehydrogenase MSMEG_3560 3621867 - 3621505 - | hypothetical protein glnA 3623269 - 3621908 - | glutamine synthetase catalytic domain TERM 1374 3622666 - 3622624 - G 78 -8.2 -4.26076 | overlap 3622627 TGATGCGCATCAAAA TCAGCTGATCGGCCGCCGCC ACC GGCGGCAGCGGCGCAAGCGA GATCTCGAACTGGTT TERM 1375 3622969 - 3622959 - G 75 -8.2 -4.20516 | overlap 3622960 TCCTGATCGAAGAAA GCGC CGG GCGC CCAGGCCAATCCGTC pcaC 3623794 - 3623312 - | hypothetical protein MSMEG_3563 3626027 - 3623967 - | drug transporter TERM 1376 3626155 - 3626115 - R 100 -22.6 -2.81642 | ACAGCACGCATGACA CCGCCCCGGGCAACCGGC GGTCT ACCGGCTACCCGAGGCGG TGATGGGCGAAACCG bfr 3626669 - 3626184 - | bacterioferritin MSMEG_3565 3627010 - 3626894 - | hypothetical protein MSMEG_3566 3626921 - 3627553 + | FadD16 protein MSMEG_3568 3627559 - 3627768 + | hypothetical protein MSMEG_3567 3628532 - 3627765 - | enoyl-CoA hydratase MSMEG_3569 3629335 - 3628592 - | hypothetical protein MSMEG_3570 3629411 - 3631426 + | hypothetical protein MSMEG_3571 3632071 - 3631442 - | thioesterase family protein MSMEG_3572 3632220 - 3632795 + | transcriptional regulator, TetR family protein TERM 1377 3632941 - 3632959 + G 74 -14.6 -3.02461 | TCTGGCCATGGGCGT GCTCGCGA TGA TCGCGAGC TATTCCGGCGCGTTC MSMEG_3573 3632831 - 3633964 + | integral membrane protein, putative TERM 1378 3634145 - 3634133 - g 70 -9.1 -3.89572 | ACCCAACTACAACAA GGCGT GGG ACGCC TTCGACCCGGTGGAC MSMEG_3574 3633987 - 3635588 + | TPR domain-containing protein MSMEG_3575 3635643 - 3636122 + | cytidine/deoxycytidylate deaminase, zinc-binding region MSMEG_3576 3636119 - 3637426 + | alpha-amylase 3 MSMEG_3577 3637878 - 3637429 - | calpastatin MSMEG_3578 3638039 - 3640156 + | putative cyclase MSMEG_3579 3640153 - 3641547 + | transmembrane protein TERM 1379 3641566 - 3641604 + F 91 -16.6 -3.48924 | CTCGGAGTTCGTCTC CGCCGTCGCCTCCCGGTG TGT CACCGGGAGGTCTCGACG TTGTCTCGACGCTGA MSMEG_3580 3641776 - 3642765 + | antigen 85-C TERM 1380 3642777 - 3642819 + T 93 -15.6 -3.91897 | opp_overlap 3642771 3642770, overlap 3642778 3642781 GTAACAAACCACCCA CCCAGGGAGCCTGCCGTT ACCCCCC GACGGCAGGCTCCCTGCC TTTCTGCCTCACCCC TERM 1381 3642778 - 3642818 + T 93 -19.1 -2.94924 | opp_overlap 3642771 3642770, overlap 3642777 3642781 TAACAAACCACCCAC CCAGGGAGCCTGCCGTT ACCCCCC GACGGCAGGCTCCCTGC CTTTCTGCCTCACCC TERM 1382 3642781 - 3642815 + T 90 -19.4 -2.71325 | opp_overlap 3642771 3642770, overlap 3642778 3642777 CAAACCACCCACCCA GGGAGCCTGCCGTT ACCCCCC GACGGCAGGCTCCC TGCCTTTCTGCCTCA MSMEG_3581 3643589 - 3642828 - | FabG protein lon 3643729 - 3646068 + | ATP-dependent protease La MSMEG_3583 3646220 - 3647224 + | monooxygenase MSMEG_3584 3650245 - 3647366 - | membrane protein, MmpL family protein TERM 1383 3648107 - 3648152 + g 72 -13.3 -3.16668 | gap 1, opp_overlap 3648119 GGCGTTGCCCTCGTG GGTGATGATG-AACCGGGCGGC CTT GCCGTCCGGTGACATCAGCAGC TTCATCCCGGTCTTG TERM 1384 3648139 - 3648119 - G 72 -13.9 -3.21099 | opp_overlap 3648107 GTGGGTGATGATGAA CCGGGCGGC CTT GCCGTCCGG TGACATCAGCAGCTT MSMEG_3585 3650718 - 3650224 - | MmpS2 protein MSMEG_3586 3652161 - 3650839 - | major facilitator family protein transporter TERM 1385 3651280 - 3651270 - G 72 -4.6 -4.44797 | CCACGAAGACGAAAA CGAG CAT CCCG AACGACCCCCACAGA TERM 1386 3651449 - 3651422 - G 70 -14.8 -2.82516 | CCGCCGATCAGCAGA TGCGGCGCGCCC TTGA GGGCGCCCCACA GCGGAACGGCTCGGA MSMEG_3587 3652441 - 3653880 + | D-serine/D-alanine/glycine transporter MSMEG_3588 3653933 - 3654058 + | hypothetical protein MSMEG_3589 3654084 - 3654329 + | hypothetical protein TERM 1387 3654631 - 3654600 - g 74 -15.8 -2.71144 | CATCCTCGGCAACGA CGAGGACCGCGCGG CGTT CCGCACGGCCGTCG ACGGCGCCCACCGGC MSMEG_3590 3654331 - 3655206 + | hypothetical protein TERM 1388 3655283 - 3655312 + G 73 -7.1 -4.15044 | gap 1, opp_overlap 3655258 3655253 3655255, overlap 3655283 3655290 GATGTGGCTCGCGAT C-CCGTACCTGACC GTC GGTCTGGTGTGGAG TTTCTTCCACGCCGA MSMEG_3591 3655206 - 3655454 + | hypothetical protein MSMEG_3592 3655466 - 3656092 + | hypothetical protein MSMEG_3593 3656099 - 3656827 + | hypothetical protein MSMEG_3594 3656839 - 3658068 + | anthranilate dioxygenase reductase MSMEG_3595 3658215 - 3658883 + | hypothetical protein TERM 1389 3660664 - 3660643 - gf 80 -13.7 -3.4252 | overlap 3660646 CCTCATCGACGACAA CCACCCGGA CCTG CCCGGGTGG CTGCGCCGGCGCAGG MSMEG_3596 3658883 - 3662089 + | ATPase MSMEG_3597 3661633 - 3662124 + | hypothetical protein TERM 1390 3662132 - 3662100 - Tf 100 -23.5 -5.0538 | opp_overlap 3662100 CCTGACCCGAAAAAA GAGGCCGGCCACCGA GGT TCGGTGACCGGCCCC TTGTGCGTAGATCAG TERM 1391 3662100 - 3662132 + TF 100 -19.1 -3.36878 | opp_overlap 3662100 CCTGACCCGAAAAAA GAGGCCGGCCACCGA GGT TCGGTGACCGGCCCC TTGTGCGTAGATCAG MSMEG_3598 3663193 - 3662144 - | periplasmic sugar-binding proteins MSMEG_3599 3664277 - 3663228 - | sugar-binding transcriptional regulator, LacI family protein MSMEG_3600 3662792 - 3663292 + | hypothetical protein MSMEG_3601 3665353 - 3664319 - | ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components MSMEG_3602 3666888 - 3665350 - | ribose transport ATP-binding protein RbsA TERM 1392 3665496 - 3665470 - G 70 -9.3 -3.86015 | overlap 3665491 GAGTTCGCCGACAAA CGCGCCGCCGC GCATG ACGAAGGCGCG ATGGGACAGGCCGAC MSMEG_3603 3667931 - 3666885 - | oxidoreductase, zinc-binding dehydrogenase family protein MSMEG_3604 3668692 - 3667925 - | sorbitol utilization protein SOU2 TERM 1393 3668521 - 3668541 + g 74 -13.9 -3.34062 | overlap 3668520 GCAGTTGGTGTCCTG CCGCGGCGG CCT CGGCCGCGG TCTTCTCGTTGCGTT MSMEG_3605 3669759 - 3668719 - | sorbitol dehydrogenase MSMEG_3606 3669958 - 3670938 + | transcriptional regulator MSMEG_3607 3670935 - 3671717 + | short chain dehydrogenase MSMEG_3608 3673200 - 3671734 - | acetyl-CoA acetyltransferase MSMEG_3609 3674240 - 3673257 - | hydride transferase 1 MSMEG_3610 3672598 - 3673341 + | hypothetical protein TERM 1394 3675211 - 3675172 - g 78 -6.2 -4.62069 | overlap 3675173 GGTGGACGGGAAAAA GGTGGAAGGCACCTGGCG CTCG CACCAGGTGCCGCTCTCG GAGACCCGCACCAAT xfp 3674267 - 3676639 + | putative phosphoketolase MSMEG_3612 3676719 - 3677468 + | integral membrane protein MSMEG_3613 3678081 - 3677470 - | hypothetical protein TERM 1395 3678012 - 3678048 + g 86 -6.4 -4.92385 | gap 1 GGTCGACGGTGTTCA CCAGCGCCTGGATGCGC GACA GCG-GCCCAGGAGCGGG TTTTGTTTCGCTGTC MSMEG_3614 3678199 - 3678690 + | hypothetical protein MSMEG_3615 3679718 - 3678705 - | zinc-binding alcohol dehydrogenase family protein TERM 1396 3679357 - 3679383 + g 75 -10.1 -4.07568 | CCGTCGGCATCCCAC CCTGTGTACCG CGATT CGGGGCACAGG TTTTCCCGCCCGCGC MSMEG_3616 3680041 - 3679739 - | integral membrane protein TERM 1397 3679875 - 3679859 - G 76 -2.2 -4.74801 | gap 1, overlap 3679861 GAAGCTGAGCAAAAA GC-CGCC GATG AGCGCGC CGACCACTCCGATGA MSMEG_3617 3680523 - 3680780 + | hypothetical protein TERM 1398 3680833 - 3680795 - T 100 -23.3 -4.80455 | gap 1, opp_overlap 3680803 GAGCGAAACACAAAA GCGAACGACCCCGGACCC ATGC GGG-CCGGGGTCGTTCAC CACGTGCGGATCAGG MSMEG_3618 3681905 - 3680844 - | alanine and proline-rich secreted protein apa MSMEG_3619 3682273 - 3682944 + | short chain dehydrogenase MSMEG_3620 3682967 - 3683896 + | hypothetical protein ndh 3683996 - 3685369 + | NADH dehydrogenase MSMEG_3622 3686027 - 3685389 - | hypothetical protein ureG 3686713 - 3686027 - | urease accessory protein UreG MSMEG_3624 3687379 - 3686744 - | urease accessory protein uref ureC 3689113 - 3687380 - | urease subunit alpha ureB 3689442 - 3689113 - | urease, beta subunit ureA 3689754 - 3689452 - | urease subunit gamma MSMEG_3628 3690232 - 3689837 - | ComA operon protein 2 TERM 1399 3690314 - 3690276 - R 95 -13.2 -4.25104 | gap 2, overlap 3690278 3690279 GGCGCCGTACCAAAA GATTCGGGCGGGTCCCGC TTGAC GCGGGACCCGCCCT--TC GAGTGGACCGGGGGT TERM 1400 3690314 - 3690278 - R 89 -15 -3.73042 | overlap 3690276 3690279 CGCCGTACCAAAAGA TTCGGGCGGGTCCCGC TTGAC GCGGGACCCGCCCTTC GAGTGGACCGGGGGT TERM 1401 3690313 - 3690279 - R 89 -18.5 -2.83504 | overlap 3690276 3690278 GCCGTACCAAAAGAT TCGGGCGGGTCCCGC TTGAC GCGGGACCCGCCCTT CGAGTGGACCGGGGG MSMEG_3629 3691169 - 3690396 - | hypothetical protein MSMEG_3630 3691404 - 3691811 + | transcriptional repressor, CopY family protein MSMEG_3631 3691826 - 3692782 + | integral membrane protein gnd 3692833 - 3694299 + | 6-phosphogluconate dehydrogenase TERM 1402 3695019 - 3694985 - g 72 -13.5 -3.14132 | gap 1, overlap 3694932 3694953 GGCCGTCGGCATCAA CGGCGA-CGTCGGCGC CAAG GCGCAGGCGCTCGCCG AGGCCGGCGCGGATC TERM 1403 3695516 - 3695481 - g 78 -13.2 -3.65902 | gap 1, opp_overlap 3695484 GGCATGGCATCCAAA CGCGCCGTGGCCGCGCG CAC CGCG-GGCGACAGCTCG TTCGACCGGGCCCGC MSMEG_3634 3694314 - 3695750 + | inositol-5-monophosphate dehydrogenase MSMEG_3633 3696785 - 3695733 - | ferric cations import ATP-binding protein FbpC TERM 1404 3696563 - 3696532 - G 78 -12.2 -3.72576 | gap 1, overlap 3696509 3696536 TCCTGCGGCATCAAA CCCA-CGCGGCGGCG GTG CGCCGGCACGACGGG TCCGTCGCCCACCAC MSMEG_3635 3698292 - 3696787 - | iron(III)-transport system permease protein SfuB MSMEG_3636 3699386 - 3698337 - | ferric iron-binding periplasmic protein of ABC transporter TERM 1405 3698732 - 3698748 + g 86 -13.7 -3.84406 | GCCCGGCGTCGACGG CGTCGCG CAC CGCGACG TTGTTCTCGTAGGGC TERM 1406 3700216 - 3700171 - g 85 -15.9 -3.61398 | opp_overlap 3700165 3700187 3700188 GCTGGTGCCGAAGAA CCTCGCGGTGGCGCGCCCGGT TCCG ACGGCGCGCGCCGCCGCGCCG TTCCAGCTGCTGTTC MSMEG_3637 3699761 - 3701146 + | CBS domain-containing protein MSMEG_3638 3701139 - 3702233 + | CBS domain-containing protein MSMEG_3639 3702226 - 3703254 + | hypothetical protein glcB 3703284 - 3705449 + | malate synthase G MSMEG_3641 3705497 - 3707785 + | hypothetical protein gcvP 3710691 - 3707851 - | glycine dehydrogenase TERM 1407 3708494 - 3708450 - G 73 -7.8 -4.11394 | gap 2, opp_overlap 3708461, overlap 3708451 ACGTGATGGGCAAAA TCGACG-CCGAACCGTA-CGGC GCG GCCGACACGGTGTGGTCGTCGG ACAGTTCGTCGGCGA TERM 1408 3709945 - 3709972 + g 82 -17.8 -3.08798 | gap 1 CAGGTCCGCACCGAC GGC-CACGAGCGC CTT GCGCTCGTGGGCC TGTTCGATCAGCGGT MSMEG_3643 3710692 - 3710910 + | hypothetical protein MSMEG_3644 3711610 - 3711023 - | transcriptional regulator, MerR family protein MSMEG_3645 3712385 - 3711891 - | hypothetical protein MSMEG_3646 3713243 - 3712479 - | transcriptional regulator, MerR family protein MSMEG_3647 3713710 - 3713279 - | forkhead-associated protein gcvH 3714327 - 3713932 - | glycine cleavage system protein H MSMEG_3649 3715183 - 3714350 - | hypothetical protein MSMEG_3650 3715542 - 3715210 - | integral membrane protein MSMEG_3651 3716495 - 3715572 - | membrane associated protein MSMEG_3652 3717096 - 3716506 - | CDP-diacylglycerol-glycerol-3-phosphate MSMEG_3653 3716443 - 3717138 + | hypothetical protein MSMEG_3654 3719510 - 3717156 - | preprotein translocase subunit SecA MSMEG_3655 3719609 - 3721534 + | ABC transporter, permease/ATP-binding protein MSMEG_3656 3721548 - 3723488 + | ABC transporter, permease/ATP-binding protein MSMEG_3657 3725001 - 3723502 - | hypothetical protein MSMEG_3658 3725492 - 3724998 - | hypothetical protein TERM 1409 3725047 - 3725031 - G 74 -10.8 -3.76837 | CACATAATCGAAGAA CGCCCG GATCT CGGGCG GGAAGTAAGCGATTT MSMEG_3659 3726226 - 3725537 - | TetR-family protein transcriptional regulator MSMEG_3660 3726341 - 3726784 + | hypothetical protein TERM 1410 3726838 - 3726818 - T 72 -11.1 -3.53733 | overlap 3726816 3726820 GTTATTGCACAAACA GATCGGCCG AGT CGGCCGATG CCTGCACGATGGTGT TERM 1411 3726836 - 3726820 - T 80 -13.7 -3.34244 | overlap 3726818 3726816 TATTGCACAAACAGA TCGGCCG AGT CGGCCGA TGCCTGCACGATGGT MSMEG_3661 3727496 - 3726804 - | hypothetical protein TERM 1412 3727594 - 3727652 + r 76 -14.3 -3.1352 | gap 1, opp_overlap 3727589 3727602 GACGTGAGAACTGGC CCGC-AACAGCGGACGGCGGCCCGGACC AGAT GGCCCGGGCCGCCGCTCGCTACCGGCGC TGTATTGCGTTACCG TERM 1413 3727643 - 3727602 - R 100 -28.7 -3.02043 | opp_overlap 3727594, overlap 3727589 AACTGGCCCGCAACA GCGGACGGCGGCCCGGACC AGAT GGCCCGGGCCGCCGCTCGC TACCGGCGCTGTATT MSMEG_3662 3728298 - 3727672 - | mannose-binding lectin MSMEG_3663 3729863 - 3728448 - | oxidoreductase MSMEG_3664 3731060 - 3729915 - | transporter, monovalent cation:proton antiporter-2 (CPA2) family protein TERM 1414 3731102 - 3731086 - R 84 -13.7 -3.62096 | GTGCAGGACCGGAAA CGTCGCC GTT GGCGACG ATCTCCCCCACGCCG MSMEG_3665 3731569 - 3731063 - | TrkA domain-containing protein MSMEG_3666 3732520 - 3731597 - | C-5 sterol desaturase MSMEG_3667 3734104 - 3732542 - | para-nitrobenzyl esterase TERM 1415 3733250 - 3733274 + g 78 -17.1 -2.72991 | opp_overlap 3733235 3733234 CGGCGCGAACGCCAG GGTGCCCGGGC TCT GCGCGGGCACC TCGTTGAAGATCTGC MSMEG_3668 3734280 - 3735554 + | acyl-CoA dehydrogenase MSMEG_3669 3735585 - 3736673 + | hypothetical protein MSMEG_3670 3736700 - 3737035 + | transporter, small multidrug resistance (SMR) family protein MSMEG_3672 3737032 - 3737358 + | transporter, small multidrug resistance (SMR) family protein MSMEG_3671 3738537 - 3737317 - | integral membrane protein TERM 1416 3737637 - 3737597 - G 71 -10.2 -3.70902 | GTGGCGACACCGAAA CCGGCCGCGGCGAATCCG GCGAT CGAGCCCGCCGTGGACGG GAACGCCAGGGCGGC malQ 3738781 - 3740985 + | 4-alpha-glucanotransferase MSMEG_3674 3741065 - 3741475 + | hypothetical protein TERM 1417 3741493 - 3741529 + F 100 -24.6 -2.94099 | overlap 3741495 CCCGCCAGATCCACC GACGAGCCCGTGATCC ACACC GGATCGCGGGCTCGTC TGTCTCATGCGCGAC TERM 1418 3741495 - 3741527 + F 100 -21.4 -3.02471 | overlap 3741493 CGCCAGATCCACCGA CGAGCCCGTGATCC ACACC GGATCGCGGGCTCG TCTGTCTCATGCGCG TERM 1419 3742264 - 3742294 + G 71 -11.8 -3.61398 | opp_overlap 3742242 GGCCCGCGTGCGGGC CATGACCATCGCGG CGA CCGCGGTGTACATG TTCTTCCAGCGCGGG MSMEG_3675 3741641 - 3742540 + | metal-dependent hydrolase MSMEG_3676 3742546 - 3743655 + | phenoxybenzoate dioxygenase beta subunit TERM 1420 3744603 - 3744588 - g 77 -11.8 -3.85698 | opp_overlap 3744586 3744598 3744600, overlap 3744598 GCGGCCCCGCACAAA CGGCCG AAGA CGGCCG CGTTGATCGCCGGCG TERM 1421 3744906 - 3744853 - g 84 -16.5 -3.40403 | overlap 3744854 CTCCCGCGACGACAA CCGCTGCGACCACGGCGGCCGCCGC CGCG GCGCAGACCGCCGTGATCGGCGCGT CGTGCTCACCGGTGG TERM 1422 3744905 - 3744854 - g 82 -20 -2.64099 | overlap 3744853 TCCCGCGACGACAAC CGCTGCGACCACGGCGGCCGCCGC CGCG GCGCAGACCGCCGTGATCGGCGCG TCGTGCTCACCGGTG MSMEG_3677 3743679 - 3745160 + | serine/threonine protein kinase MSMEG_3678 3745516 - 3745836 + | hypothetical protein TERM 1423 3745939 - 3745987 + T 95 -15.2 -4.18197 | opp_overlap 3745983, overlap 3745940 ACGCGCCGCGTCTCA TCAGCAGTCTGCGCACACTCGG CACCA CCGAGCGTGCGTAGACAGCCGC TTTTCACTCGGCGGT TERM 1424 3745940 - 3745986 + T 89 -18.7 -3.10597 | opp_overlap 3745983, overlap 3745939 CGCGCCGCGTCTCAT CAGCAGTCTGCGCACACTCGG CACCA CCGAGCGTGCGTAGACAGCCG CTTTTCACTCGGCGG MSMEG_3679 3746669 - 3746175 - | phosphohydrolase MSMEG_3680 3746956 - 3747261 + | hypothetical protein TERM 1425 3747324 - 3747296 - f 78 -10.2 -3.95435 | opp_overlap 3747298 3747299, overlap 3747291 3747299 CGCGCGAAAACATAA CCAGGGGCACCC ATTTG GGGTGCCCCTTT TTCGTGCGCACACAC TERM 1426 3747299 - 3747321 + F 100 -16.3 -4.72272 | opp_overlap 3747296 3747291 3747299, overlap 3747298 GCGAAAACATAACCA GGGGCACCC ATTTG GGGTGCCCC TTTTTCGTGCGCACA TERM 1427 3747321 - 3747299 - f 85 -16.3 -3.03104 | opp_overlap 3747298 3747299, overlap 3747296 3747291 GCGAAAACATAACCA GGGGCACCC ATTTG GGGTGCCCC TTTTTCGTGCGCACA MSMEG_3682 3747389 - 3748171 + | hypothetical protein MSMEG_3681 3748584 - 3748168 - | hypothetical protein MSMEG_3683 3749223 - 3748660 - | hypothetical protein MSMEG_3684 3750151 - 3749291 - | steroid delta-isomerase TERM 1428 3749778 - 3749799 + g 74 -11.5 -3.727 | TCGGCGATCCGGGGT CCGGCGCCG GTCT CGGTGTCGG TTTCGGTGTCCTGCA MSMEG_3685 3750230 - 3750661 + | hypothetical protein MSMEG_3686 3750763 - 3751188 + | hypothetical protein MSMEG_3687 3751261 - 3752916 + | acyl-CoA synthetase TERM 1429 3752926 - 3752936 + T 77 -8.2 -4.32034 | ACGTGAATCAGCTTG CGGC GCT GCCG TTTTCCTGATCGTCG MSMEG_3688 3753229 - 3752918 - | hypothetical protein MSMEG_3689 3754973 - 3753243 - | sodium:solute symporter TERM 1430 3753558 - 3753527 - G 72 -5.9 -4.30576 | gap 2, overlap 3753528 CCCCCAGCAGGAAAA CCGTGACGGCCGAGA GCGT TC-CGGCCACCA-GG CCGGTCCAGCCGGCG TERM 1431 3755020 - 3755051 + H 90 -5.9 -5.18297 | gap 1, overlap 3755026 TCAGAAGGTAACAGC TTGATCGCCAGGGT ATGTC ACCCTGG-GTTCGA TTTTGTTTGTTATTG galT 3755928 - 3757010 + | galactose-1-phosphate uridylyltransferase galK 3757013 - 3758101 + | galactokinase MSMEG_3693 3759400 - 3758177 - | cytochrome P450 monooxygenase MSMEG_3694 3759496 - 3760995 + | feruloyl-CoA synthetase MSMEG_3695 3761143 - 3761553 + | hypothetical protein MSMEG_3696 3761653 - 3762354 + | IS1096, tnpR protein MSMEG_3697 3763684 - 3762362 - | IS1096, tnpA protein MSMEG_3698 3763403 - 3763897 + | hypothetical protein MSMEG_3699 3763858 - 3763968 + | hypothetical protein TERM 1432 3764718 - 3764678 - g 72 -14.2 -3.13403 | overlap 3764676 GCGGCTGCAGGAACA CGTCGGAGTGTTTCGCG-AG TAC CTGCGCGAA-CATTCCGACG ATCCCGCCGGCGAGG MSMEG_3700 3763971 - 3765302 + | peroxidase MSMEG_3701 3765299 - 3766309 + | hypothetical protein MSMEG_3703 3766881 - 3767561 + | hypothetical protein MSMEG_3704 3767728 - 3768630 + | 3-alpha-hydroxysteroid dehydrogenase TERM 1433 3768902 - 3768940 + G 70 -13 -3.28924 | GCGCGCGTCGCCGAC CGTGGCGCGTTCGGCGCC GTG GTCGCCGGGTGCCTCACG TTGTGGGGCACCATG MSMEG_3705 3768650 - 3769939 + | major facilitator superfamily protein MFS_1 TERM 1434 3772019 - 3771994 - g 75 -4.5 -4.56597 | overlap 3771996 GGGTTGCCCGAAAAA CTCCACGTGCA ACTG CGCCCGCGGCG CGCGGGTTCCGACGT aceA 3770113 - 3772422 + | isocitrate lyase TERM 1435 3772437 - 3772426 - f 72 -7.2 -4.2231 | AAGGAGGACTGAAAA GCGG CATG CCGC TGCAGAACCGTGTCA TERM 1436 3772697 - 3772650 - g 86 -19 -3.14132 | opp_overlap 3772648 3772647 TTCTTCCTCGACGAA GCGGTGGCACTCGCCGCCGGGC ACCG GCCATGCGGCGAATGCCGACGC GAGTTCTACCATGCG MSMEG_3707 3772431 - 3773042 + | hypothetical protein TERM 1437 3773713 - 3773685 - g 78 -13.1 -3.81951 | overlap 3773664 3773686 TTGGACATCATCAAA GCGGCGAAACCGA GTC CCGGCTTCGCCGA CAGCACCTTCCGCAG TERM 1438 3773712 - 3773686 - g 75 -16.6 -2.88849 | overlap 3773664 3773685 TGGACATCATCAAAG CGGCGAAACCGA GTC CCGGCTTCGCCG ACAGCACCTTCCGCA MSMEG_3708 3773112 - 3774191 + | catalase MSMEG_3710 3774188 - 3774766 + | cytochrome b561 family protein MSMEG_3709 3776077 - 3774749 - | hypothetical protein MSMEG_3711 3776272 - 3776153 - | hypothetical protein MSMEG_3712 3776285 - 3776467 + | hypothetical protein TERM 1439 3776669 - 3776685 + G 74 -13.7 -3.30124 | GGCCGACGAGCAGGC CCACGCC CCT GGCGTGG TTCTACCGACTCGAC MSMEG_3713 3776635 - 3777081 + | hypothetical protein MSMEG_3714 3777183 - 3777833 + | hypothetical protein TERM 1440 3781813 - 3781799 - g 79 -5.6 -4.72846 | opp_overlap 3781804 3781807, overlap 3781801 GTAGAGATCGAAAAA CTCTGC ACC GCCGAG CGCGTCGCTGTTTGT MSMEG_3715 3778220 - 3785944 + | linear gramicidin synthetase subunit C MSMEG_3716 3786107 - 3786208 + | hypothetical protein MSMEG_3718 3787202 - 3787639 + | hypothetical protein MSMEG_3719 3788843 - 3787674 - | sodium/calcium exchanger protein MSMEG_3720 3789061 - 3788855 - | recombination activating protein 1 pqqE 3790188 - 3789058 - | pyrroloquinoline quinone biosynthesis protein PqqE MSMEG_3722 3790459 - 3790181 - | bifunctional coenzyme PQQ synthesis protein C/D pqqC 3791162 - 3790446 - | pyrroloquinoline quinone biosynthesis protein PqqC pqqB 3792074 - 3791172 - | pyrroloquinoline quinone biosynthesis protein PqqB TERM 1441 3792150 - 3792099 - R 89 -18.8 -3.14132 | overlap 3792101 CTTCCTTCGTAGGAA TACACGGCG-GGGCGCCGGGCCGA CCCGAC CCGGCCCGACGCCCTCGCGGTG-A GGCGACTAGTCGTCG TERM 1442 3792149 - 3792101 - R 100 -23.9 -3.13403 | gap 1, overlap 3792099 TCCTTCGTAGGAATA CACGGCG-GGGCGCCGGGCCGA CCCGAC CCGGCCCGACGCCCTCGCGGTG AGGCGACTAGTCGTC pqqA 3792269 - 3792156 - | coenzyme PQQ biosynthesis protein A MSMEG_3726 3794004 - 3792319 - | alcohol dehydrogenase MSMEG_3727 3794488 - 3794018 - | hypothetical protein MSMEG_3728 3794524 - 3794658 + | hypothetical protein katG 3796970 - 3794904 - | catalase/peroxidase HPI MSMEG_3730 3798542 - 3797154 - | helix-turn-helix, Fis-type, putative MSMEG_3731 3799824 - 3798739 - | dipeptidase 2 TERM 1443 3799881 - 3799905 + Gr 74 -5 -4.49389 | gap 1, overlap 3799884 GCGCGACATCCCCAT CG-AGCGTGAC CGAG GTCACTCTACG TTTTGGTTGTAACGT MSMEG_3732 3799807 - 3799917 + | hypothetical protein MSMEG_3733 3800311 - 3800054 - | hypothetical protein TERM 1444 3800450 - 3800423 - R 81 -12 -3.93782 | GCACCGAACAGCAAA GGCGGCTCCGAA CTCC TCCGAAACCGCC TCTGGCCCGTAGAAA TERM 1445 3800511 - 3800542 + r 78 -13.8 -3.22906 | gap 1, opp_overlap 3800516, overlap 3800516 GTCGCCCGACAAACG AAAAACCCGCTCGGC TTC GCCG-GCGGGTTTTC ATTTTGTCGGGCTGA TERM 1446 3800537 - 3800516 - R 100 -13.7 -5.04601 | gap 1, opp_overlap 3800516 3800511 CCGACAAACGAAAAA CCCGCTCGGC TTC GCCG-GCGGG TTTTCATTTTGTCGG TERM 1447 3800516 - 3800537 + r 100 -13.7 -4.73108 | gap 1, opp_overlap 3800516, overlap 3800511 CCGACAAACGAAAAA CCCGCTCGGC TTC GCCG-GCGGG TTTTCATTTTGTCGG MSMEG_3735 3801659 - 3800703 - | YtnM protein MSMEG_3736 3801829 - 3801719 - | hypothetical protein MSMEG_3737 3802703 - 3801921 - | integral membrane protein TERM 1448 3802758 - 3802739 - R 77 -12.8 -3.41878 | overlap 3802740 CGTCCGAAGCGATAA CCCGCGCC TATC GGCGCGGA TCAAACCACATATCG TERM 1449 3802757 - 3802740 - R 70 -14.1 -2.64912 | overlap 3802739 GTCCGAAGCGATAAC CCGCGCC TATC GGCGCGG ATCAAACCACATATC engA 3804189 - 3802774 - | GTP-binding protein EngA cmk 3804872 - 3804186 - | cytidylate kinase TERM 1450 3804636 - 3804690 + g 79 -15.7 -3.35679 | gap 1, opp_overlap 3804636 3804637, overlap 3804637 TTCTCCGGCAAGGAA TGCCG-CGTCGACATCGGGATCTGAG CCCA CTCCGATCTCGGCGTCGGCGGCGGCC TTCTCGATCGCCGCA TERM 1451 3804637 - 3804689 + g 79 -19.2 -2.61264 | gap 1, opp_overlap 3804637 3804636, overlap 3804636 TCTCCGGCAAGGAAT GCCG-CGTCGACATCGGGATCTGAG CCCA CTCCGATCTCGGCGTCGGCGGCGGC CTTCTCGATCGCCGC rluB 3805612 - 3804869 - | ribosomal large subunit pseudouridine synthase B MSMEG_3741 3806444 - 3805614 - | transcriptional regulator scpA 3807355 - 3806453 - | segregation and condensation protein A soj 3808185 - 3807352 - | SpoOJ regulator protein xerD 3809302 - 3808346 - | site-specific tyrosine recombinase XerD MSMEG_3745 3809919 - 3809299 - | MutT/nudix family protein pyrG 3811684 - 3809912 - | CTP synthetase MSMEG_3748 3813961 - 3812765 - | thiamin pyrophosphokinase catalytic subunit TERM 1452 3815689 - 3815745 + r 85 -16.3 -3.04144 | opp_overlap 3815689 CCGAGCCGGAACGCA CCCTGGTGGCGTCGGCCCTGGCCCCGC CCA GCAGGTGCAGGCCCGTCACCACCATGG TCTTGCCGGTGCCGG TERM 1453 3815745 - 3815689 - R 100 -20.7 -2.53263 | opp_overlap 3815689 CCGAGCCGGAACGCA CCCTGGTGGCGTCGGCCCTGGCCCCGC CCA GCAGGTGCAGGCCCGTCACCACCATGG TCTTGCCGGTGCCGG ppnK 3816781 - 3815858 - | inorganic polyphosphate/ATP-NAD kinase MSMEG_3751 3817587 - 3816778 - | hemolysin A MSMEG_3752 3817800 - 3817594 - | hypothetical protein MSMEG_3753 3818842 - 3817814 - | hydrolase MSMEG_3754 3819833 - 3818844 - | TPR repeat-containing protein TERM 1454 3819822 - 3819864 + g 95 -15.7 -4.19177 | gap 1, opp_overlap 3819825 3819827, overlap 3819826 3819830 GAATGGGCCGGCTGA AAAGAGAATCACCCCCCACG AAAA CGTGGGGGGTGATTC-CTAA TTTGTGTTCGGCGGT TERM 1455 3819861 - 3819825 - G 100 -21.8 -4.07568 | gap 1, opp_overlap 3819822 3819826 3819830, overlap 3819827 TGGGCCGGCTGAAAA GAGAATCACCCCCCACG AAAA CGTGGGGGGTGATTC-C TAATTTGTGTTCGGC TERM 1456 3819826 - 3819861 + g 100 -22 -3.11182 | opp_overlap 3819825 3819827, overlap 3819822 3819830 GGGCCGGCTGAAAAG AGAATCACCCCCCACG AAAA CGTGGGGGGTGATTCC TAATTTGTGTTCGGC TERM 1457 3819860 - 3819827 - G 100 -25.5 -3.63744 | opp_overlap 3819826 3819822 3819830, overlap 3819825 GGCCGGCTGAAAAGA GAATCACCCCCCACG AAAA CGTGGGGGGTGATTC CTAATTTGTGTTCGG TERM 1458 3819830 - 3819857 + g 95 -21.4 -3.37141 | opp_overlap 3819827 3819825, overlap 3819826 3819822 CGGCTGAAAAGAGAA TCACCCCCCACG AAAA CGTGGGGGGTGA TTCCTAATTTGTGTT TERM 1459 3820006 - 3820029 + r 78 -3.8 -4.73614 | overlap 3819988 3819987 3820018 TCTCTTATGTGGTGA CCCACATG AGAGCAAA CTTGTGGG TTTGTTTTGGTGGTG TERM 1460 3821232 - 3821243 + r 74 -2.2 -4.7254 | overlap 3821218 CGTCTTGCGACTTCG CACG GACC TGTG TTTTTAGTAAACAGT TERM 1461 3825161 - 3825146 - R 75 -3.2 -4.72696 | TCCAAACAAAAACAA CCCATC CAAA GACAGG TGAATTCACAATCAG TERM 1462 3825217 - 3825198 - R 72 -2.8 -4.67982 | overlap 3825199 TCTGACCTAACAAAA CGACACCA AAAC TGGCATCA AAAACATCCACCCCT TERM 1463 3825326 - 3825354 + r 71 -13.9 -2.78384 | opp_overlap 3825306 3825304 3825329 3825344, overlap 3825329 GACTTTGCCGCGCAA GAATCCGGCGGCT AAA AGCCGCTGCATTC TCTAGTGGCAGCGAG tyrS 3826816 - 3825494 - | tyrosyl-tRNA synthetase TERM 1464 3825653 - 3825640 - G 75 -9.5 -4.03234 | opp_overlap 3825651, overlap 3825641 CGTTGTTCACATAAA CGCCG CCCT CGGCG ACCGTCCGACGCGCC MSMEG_3759 3827446 - 3826823 - | 3-methyladenine DNA glycosylase MSMEG_3760 3827521 - 3827730 + | hypothetical protein TERM 1465 3828003 - 3828025 + G 73 -12 -3.53444 | overlap 3828004 ATCGATCTGCATGCC GTGCGCGACA GTG TGTCGCGCAG TTTCGGCGCCGATGC TERM 1466 3828004 - 3828024 + G 70 -15.5 -2.71924 | overlap 3828003 TCGATCTGCATGCCG TGCGCGACA GTG TGTCGCGCA GTTTCGGCGCCGATG MSMEG_3761 3827733 - 3828299 + | putative Clp protease subunit MSMEG_3762 3828376 - 3829140 + | ABC transporter ATP-binding protein TERM 1467 3829487 - 3829523 + G 78 -14.3 -3.54029 | overlap 3829488 GGCGTTCTCGCTCGC GGCCGCCGCGCAGGCCA CCC TCGCCTGCACGGTGGCG TTCTGGTTGCTGGGG TERM 1468 3829488 - 3829522 + G 78 -17.8 -2.72096 | overlap 3829487 GCGTTCTCGCTCGCG GCCGCCGCGCAGGCCA CCC TCGCCTGCACGGTGGC GTTCTGGTTGCTGGG MSMEG_3763 3829137 - 3829907 + | ABC transporter efflux protein, DrrB family protein MSMEG_3765 3829921 - 3830556 + | transcriptional regulator MSMEG_3764 3830739 - 3830530 - | hypothetical protein TERM 1469 3830698 - 3830724 + g 76 -2.3 -4.7497 | gap 1, overlap 3830704 GAGCGGACCGCGATC CTGC-GGGCA GACCAGGA TGCTCAGCAG TTTTTCGTCGATCAC MSMEG_3766 3831285 - 3830749 - | hypothetical protein MSMEG_3767 3834354 - 3831361 - | acyl-CoA synthetase MSMEG_3768 3834599 - 3836371 + | macrolide ABC transporter ATP-binding protein argH 3837893 - 3836484 - | argininosuccinate lyase argG 3839185 - 3837986 - | argininosuccinate synthase argR 3839687 - 3839211 - | arginine repressor argF 3840615 - 3839692 - | ornithine carbamoyltransferase argD 3841784 - 3840612 - | acetylornithine aminotransferase argB 3842662 - 3841781 - | acetylglutamate kinase TERM 1470 3842046 - 3842094 + g 72 -13.9 -3.21276 | gap 2, overlap 3842050 AGCATCACGAGCTTC TCGGCGCCGA-GC-GCCTCGGCC AACGC GGCCGCGGCCGTGTCGGCGTTGA TGTTGTGCACCACAC TERM 1471 3842050 - 3842090 + g 76 -13.3 -3.41745 | gap 2, overlap 3842046 TCACGAGCTTCTCGG CGCCGA-GC-GCCTCGGCC AACGC GGCCGCGGCCGTGTCGGCG TTGATGTTGTGCACC argJ 3843855 - 3842659 - | bifunctional ornithine acetyltransferase/N-acetylglutamate synthase protein argC 3844895 - 3843864 - | N-acetyl-gamma-glutamyl-phosphate reductase TERM 1472 3844895 - 3844910 + r 79 -4 -4.90455 | overlap 3844907 CGGCTATCGAAGTCA TGCAGA CATT TTTGCA TTTTTATGCATATCT pheT 3847685 - 3845187 - | phenylalanyl-tRNA synthetase subunit beta TERM 1473 3847516 - 3847567 + g 90 -15.8 -3.73953 | gap 1 GTGAGCTCTTCGATC TCGATGACGCGGCCCACGGTCAGCG GAC CGCTGACCG-GGCCCGCGGTGATGA TTTCCTCGACCTCGT pheS 3848755 - 3847685 - | phenylalanyl-tRNA synthetase subunit alpha TERM 1474 3849047 - 3849011 - R 71 -13.8 -2.72144 | gap 2, overlap 3849010 CTATGTCGGTGAAAC CTGTCGCGGTCGCGGCGA CGC TCGCCGCGA-CGCC-CAG CCACCATCCGATCCA MSMEG_3780 3850331 - 3849549 - | adenylate and guanylate cyclase catalytic domain-containing protein TERM 1475 3850096 - 3850084 - G 72 -9.1 -4.00038 | GACCACGATGAGAAA CCGAC GAG GTCGG TGAACACCAGGGTGA TERM 1476 3850253 - 3850214 - G 78 -16.5 -3.01712 | gap 2, overlap 3850216 CGTCGCGTTCCAAGA GACGGTCGGCCACGCGCGC GGCG GCACGCG-GACCG-CCGTC GCCGGCCACCGAGAG TERM 1477 3850443 - 3850469 + H 72 -11.6 -3.53012 | opp_overlap 3850464, overlap 3850412 GCCTCCCCCGTCTCG GCCGGATCGTTC GCC GAACGATTCGCC TTTCACAGGCGCAAG MSMEG_3781 3850705 - 3851742 + | hypothetical protein MSMEG_3783 3851791 - 3853026 + | acyl-CoA dehydrogenase MSMEG_3782 3853430 - 3853023 - | endoribonuclease L-PSP, putative MSMEG_3784 3854205 - 3853450 - | transcriptional regulator, IclR family protein MSMEG_3785 3855205 - 3854210 - | PfkB-family protein carbohydrate kinase TERM 1478 3854483 - 3854530 + g 82 -14.9 -3.53091 | overlap 3854486 CAACGCGGGCACCTC GGTGGTGACGCCGT-CGCGGTCG ACCG CGACCGCGCGCCGCG-CACCGTC TTTGACGACCAGGGT MSMEG_3786 3855341 - 3856615 + | D-amino acid deaminase MSMEG_3787 3856615 - 3858216 + | D-aminoacylase eda 3858213 - 3858842 + | 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase MSMEG_3789 3858872 - 3860263 + | inner membrane permease YgbN MSMEG_3790 3861027 - 3860269 - | RNA methyltransferase, TrmH family protein rplT 3861440 - 3861051 - | 50S ribosomal protein L20 rpmI 3861676 - 3861482 - | 50S ribosomal protein L35 infC 3862350 - 3861730 - | translation initiation factor IF-3 TERM 1479 3862401 - 3862383 - R 100 -14.6 -4.4891 | TCGATGAGCAGAAAA GCCCTGCT CGA AGCAGGGC CCATGCCGACCGATC MSMEG_3794 3862528 - 3862415 - | hypothetical protein MSMEG_3795 3862580 - 3862939 + | hypothetical protein lysS 3863058 - 3866327 + | lysyl-tRNA synthetase MSMEG_3797 3866375 - 3867739 + | putative esterase family protein MSMEG_3798 3868779 - 3867751 - | hypothetical protein MSMEG_3799 3870062 - 3868776 - | hypothetical protein MSMEG_3800 3870193 - 3870660 + | hypothetical protein MSMEG_3801 3871853 - 3870666 - | hypothetical protein MSMEG_3802 3873571 - 3871850 - | TPR repeat-containing protein TERM 1480 3873626 - 3873589 - R 100 -22.8 -3.14468 | TCGCATCATATGGAA GCGGCGGGCGTGCC GGAGGTCTGA GGCACGCCCGCCGC CCGGGAGGGATCAGC MSMEG_3803 3874113 - 3873637 - | lipoprotein LpqH MSMEG_3804 3874246 - 3874500 + | hypothetical protein MSMEG_3806 3874504 - 3875688 + | hypothetical protein MSMEG_3805 3876454 - 3875678 - | oxidoreductase, short chain dehydrogenase/reductase family protein MSMEG_3807 3876491 - 3877093 + | TetR-type regulator MSMEG_3809 3877122 - 3877925 + | hypothetical protein uvrA 3880816 - 3877922 - | excinuclease ABC subunit A MSMEG_3810 3880937 - 3881641 + | hydrolase MSMEG_3811 3882088 - 3881645 - | universal stress protein family protein, putative MSMEG_3812 3883237 - 3882386 - | acyl-CoA thioesterase MSMEG_3813 3883497 - 3883219 - | NAD-dependent epimerase/dehydratase TERM 1481 3883643 - 3883599 - R 100 -25.2 -3.14211 | opp_overlap 3883602 3883606, overlap 3883602 3883606 AGCTCGGGGCATGAA TGACGAACGCTCTCCTGCGA GCATG CCGCAGGAGAGCGTTCGTCT GTCGAGCGAGTGACG TERM 1482 3883602 - 3883640 + r 100 -24.8 -2.87344 | opp_overlap 3883599 3883602 3883606, overlap 3883606 TCGGGGCATGAATGA CGAACGCTCTCCTGCG AGCATGC CGCAGGAGAGCGTTCG TCTGTCGAGCGAGTG TERM 1483 3883640 - 3883602 - R 100 -25.5 -2.77899 | opp_overlap 3883602 3883606, overlap 3883599 3883606 TCGGGGCATGAATGA CGAACGCTCTCCTGCGA GCATG CCGCAGGAGAGCGTTCG TCTGTCGAGCGAGTG TERM 1484 3883636 - 3883606 - R 100 -19.1 -3.29096 | opp_overlap 3883606 3883602, overlap 3883602 3883599 GGCATGAATGACGAA CGCTCTCCTGCGA GCATG CCGCAGGAGAGCG TTCGTCTGTCGAGCG TERM 1485 3883606 - 3883636 + r 93 -18.4 -3.32022 | opp_overlap 3883602 3883599 3883606, overlap 3883602 GGCATGAATGACGAA CGCTCTCCTGCG AGCATGC CGCAGGAGAGCG TTCGTCTGTCGAGCG MSMEG_3815 3885315 - 3883930 - | drug efflux membrane protein uvrB 3887570 - 3885360 - | excinuclease ABC subunit B TERM 1486 3888073 - 3888063 - g 72 -8.2 -3.96148 | CTGGCTGACGACAAA GGGC ATG GCCC TGAGCTGGCGCGCAG MSMEG_3817 3887653 - 3888093 + | hypothetical protein MSMEG_3819 3888141 - 3888686 + | hypothetical protein MSMEG_3818 3889576 - 3888683 - | thermolabile glutaminase MSMEG_3820 3889571 - 3889792 + | hypothetical protein MSMEG_3821 3889800 - 3891341 + | amino acid permease TERM 1487 3891401 - 3891354 - T 73 -14.1 -2.89191 | opp_overlap 3891358, overlap 3891342 TGACAGGCCGACACA TGCCCGCCCGGTGCGATCC ACTCCCCCCA GGATCGCACCGGGCGTTCC ATTCGAATGCGAAAG TERM 1488 3891358 - 3891397 + T 100 -22.3 -3.18274 | opp_overlap 3891342 3891354 AGGCCGACACATGCC CGCCCGGTGCGATCC ACTCCCCCCA GGATCGCACCGGGCG TTCCATTCGAATGCG MSMEG_3822 3892152 - 3891418 - | regulatory protein GntR, HTH TERM 1489 3891805 - 3891855 + g 73 -8.1 -4.15222 | gap 2, overlap 3891839 GGCCGCAAGCCGTGT CGCGCCGGTCTCGACGACCACCCGG TAG TCGAA-GG-CGTCGCGGACGGCGCG TTTGTTGCGACGCAT MSMEG_3823 3892337 - 3893056 + | 3-oxoacyl-[acyl-carrier-protein] reductase MSMEG_3824 3893053 - 3894336 + | hypothetical protein MSMEG_3825 3894333 - 3895127 + | 3-oxoacyl-[acyl-carrier-protein] reductase MSMEG_3826 3895124 - 3896194 + | hypothetical protein MSMEG_3827 3896187 - 3897479 + | glutamine synthetase MSMEG_3828 3897476 - 3898855 + | glutamine synthetase MSMEG_3829 3898899 - 3899843 + | esterase MSMEG_3830 3899840 - 3900568 + | 3-oxoacyl-[acyl-carrier-protein] reductase TERM 1490 3900596 - 3900612 + F 80 -5.1 -4.81551 | CACGGGTGACGCCGC GGGCATT GAC AATCCCC TTTTTGGTCTAAATA MSMEG_3832 3900662 - 3902119 + | 4-hydroxyacetophenone monooxygenase TERM 1491 3903356 - 3903317 - T 100 -28.2 -4.63542 | opp_overlap 3903321, overlap 3903321 CAGAAGGTGGAAAAA GAAACCACGCAGGAAGTC TGTT GACTTCCTGCGTGGTTTC AAACGACGTGACCTG TERM 1492 3903352 - 3903321 - T 100 -23.2 -4.86385 | opp_overlap 3903321, overlap 3903317 AGGTGGAAAAAGAAA CCACGCAGGAAGTC TGTT GACTTCCTGCGTGG TTTCAAACGACGTGA TERM 1493 3903321 - 3903352 + T 100 -23.2 -3.53444 | opp_overlap 3903317 3903321 AGGTGGAAAAAGAAA CCACGCAGGAAGTC TGTT GACTTCCTGCGTGG TTTCAAACGACGTGA rpsA 3904819 - 3903380 - | 30S ribosomal protein S1 TERM 1494 3904985 - 3904999 + r 70 -11.4 -3.31792 | opp_overlap 3904981 CGCAGGACAAACTCG CCCACC CCG GGTGGG TTCTCCCGCTCGTCA MSMEG_3834 3905606 - 3905025 - | putative TetR-family protein transcriptional regulator MSMEG_3835 3905764 - 3905603 - | YesF protein MSMEG_3836 3906219 - 3905761 - | hypothetical protein MSMEG_3838 3906374 - 3907534 + | integral membrane protein MSMEG_3837 3908757 - 3907516 - | hypothetical protein MSMEG_3839 3911495 - 3908769 - | DNA polymerase I MSMEG_3840 3912411 - 3911506 - | LysR-family protein transcriptional regulator TERM 1495 3912663 - 3912709 + G 76 -14.3 -3.40403 | gap 1, overlap 3912664 TCGACCACCTGGGAC TCGGTGACGCCGTCGGCGACGC GTCC GTGGCGCCGACGGCGAT-CCGC TTCTACTCCGCCGAC TERM 1496 3912664 - 3912708 + G 77 -17.8 -2.64099 | gap 1, overlap 3912663 CGACCACCTGGGACT CGGTGACGCCGTCGGCGACGC GTCC GTGGCGCCGACGGCGAT-CCG CTTCTACTCCGCCGA MSMEG_3841 3912482 - 3913630 + | hypothetical protein MSMEG_3842 3913627 - 3914298 + | putative esterase MSMEG_3843 3914357 - 3914806 + | hypothetical protein MSMEG_3844 3914803 - 3916005 + | lipid-transfer protein MSMEG_3845 3916139 - 3916366 + | hypothetical protein MSMEG_3846 3918405 - 3916414 - | phosphotransferase enzyme family protein tynA 3920418 - 3918460 - | tyramine oxidase TERM 1497 3919941 - 3919964 + g 70 -14.6 -2.79796 | gap 1 ACTTGTACCAGGTGT CCGACCAGCCG ATG CGGC-GGTCGG TGTACTCGGGTGGCG MSMEG_3848 3921959 - 3920451 - | para-nitrobenzyl esterase MSMEG_3849 3921789 - 3922064 + | hypothetical protein MSMEG_3851 3922049 - 3922738 + | LppI protein MSMEG_3850 3923841 - 3922735 - | alkanesulfonate monooxygenase family protein MSMEG_3852 3924875 - 3923853 - | aliphatic sulfonate binding protein MSMEG_3853 3925657 - 3924920 - | putative aliphatic sulfonates transport ATP-binding protein SsuB MSMEG_3854 3926445 - 3925654 - | putative aliphatic sulfonates transport permease protein SsuC TERM 1498 3926590 - 3926533 - R 100 -19.1 -4.17878 | opp_overlap 3926534, overlap 3926535 3926539 TCAAAGGAAATGAAA TACGAACCGGCCCCGCGGGAGTGAC CGGGCGGT GTCACTCCGGCGGGGCCGGGGCTCA GAGTTTACCGGCGGC TERM 1499 3926588 - 3926535 - R 100 -19.5 -3.67051 | opp_overlap 3926534, overlap 3926533 3926539 AAAGGAAATGAAATA CGAACCGGCCCCGCGGGAGTGAC CGGGCGGT GTCACTCCGGCGGGGCCGGGGCT CAGAGTTTACCGGCG TERM 1500 3926584 - 3926539 - R 100 -27.7 -3.52063 | opp_overlap 3926534, overlap 3926535 3926533 GAAATGAAATACGAA CCGGCCCCGCGGGAGTGAC CGGGCGGT GTCACTCCGGCGGGGCCGG GGCTCAGAGTTTACC MSMEG_3855 3927340 - 3926606 - | hypothetical protein MSMEG_3856 3928698 - 3927427 - | transcriptional regulator, CadC MSMEG_3857 3929126 - 3928773 - | hypothetical protein MSMEG_3858 3929241 - 3929594 + | hypothetical protein TERM 1501 3929652 - 3929625 - T 100 -21.4 -4.7373 | opp_overlap 3929625 TGACGTCATGAAAAA GCCGCGAGTGTG CATG CACACTCGCGGC TTTCGCGTTCTCGGA TERM 1502 3929625 - 3929652 + T 100 -21.4 -3.69354 | opp_overlap 3929625 TGACGTCATGAAAAA GCCGCGAGTGTG CATG CACACTCGCGGC TTTCGCGTTCTCGGA MSMEG_3859 3930475 - 3929678 - | glycosyl transferase, group 2 family protein MSMEG_3860 3932332 - 3930485 - | polyprenol-monophosphomannose synthase Ppm1 MSMEG_3861 3933917 - 3932325 - | amidohydrolase 3 fxsA 3934450 - 3933944 - | FxsA TERM 1503 3934263 - 3934288 + g 83 -15.5 -3.54424 | gap 1, overlap 3934266 ACCGCGCCCTGGGCG CTC-GCGGCGGT CAG ACCGCCGCTGAG TTTGCGGAGCTGGCG TERM 1504 3934266 - 3934284 + g 73 -16 -2.64274 | overlap 3934263 GCGCCCTGGGCGCTC GCGGCGGT CAG ACCGCCGC TGAGTTTGCGGAGCT MSMEG_3863 3934897 - 3934505 - | pyridoxamine 5'-phosphate oxidase family protein cobN 3938574 - 3934939 - | cobaltochelatase TERM 1505 3936522 - 3936553 + g 74 -13.8 -3.25823 | gap 1, overlap 3936525 TGGGCTTCTGGCCGA GTACGTGCAGA-CCG TCG CGGATCTGCACGTCC TTGATCTCGCACAGC MSMEG_3865 3938659 - 3938871 + | hypothetical protein MSMEG_3866 3939354 - 3938878 - | hypothetical protein MSMEG_3867 3941570 - 3939351 - | ATPase family protein associated with various cellular activities MSMEG_3868 3942052 - 3941567 - | hypothetical protein TERM 1506 3941714 - 3941734 + g 79 -15.5 -3.32844 | GGTGGCCTGGAATGC CGACTGGTC GCC GACCAGTCG TTGTCCGCTGGCCGC MSMEG_3869 3942978 - 3942049 - | hypothetical protein MSMEG_3870 3943094 - 3943993 + | alpha-ketoglutarate-dependent taurine dioxygenase TERM 1507 3944028 - 3944004 - f 73 -12.1 -3.30124 | overlap 3944005 GCTGAGTTCCTAGAA TGGGTCCGAGT ATG ACCCGGACCCG TGACCAGGACGCCTG TERM 1508 3944027 - 3944005 - f 77 -15.6 -2.57931 | overlap 3944004 CTGAGTTCCTAGAAT GGGTCCGAGT ATG ACCCGGACCC GTGACCAGGACGCCT cobG 3944015 - 3945133 + | precorrin-3B synthase TERM 1509 3945585 - 3945630 + G 74 -11.7 -3.74693 | gap 1, overlap 3945586 TGCTGGAACTGCTCG ACGA-GGGTGCGCCGACCCCCG CCG CGGTGCTCGGCGGGCCCGTCGG TTTCGTCGGCTCCGC TERM 1510 3945586 - 3945629 + G 72 -15.2 -2.84602 | gap 1, overlap 3945585 GCTGGAACTGCTCGA CGA-GGGTGCGCCGACCCCCG CCG CGGTGCTCGGCGGGCCCGTCG GTTTCGTCGGCTCCG cobH 3945143 - 3945769 + | precorrin-8X methylmutase TERM 1511 3946076 - 3946049 - g 82 -20.6 -2.52543 | opp_overlap 3946050 3946051 AGGCCGCCGAACGCA TCGCGGCCCACC TGCA GGCGGGCCGCGA CGTCGCGCTGCTGGC MSMEG_3873 3945766 - 3947277 + | cobalamin biosynthesis protein cobIJ TERM 1512 3947725 - 3947773 + G 72 -14.3 -3.14344 | GATGCTGGAGGCCCG CGGCACCAGCGGCGCGGTCCGCG ACA TGTGGGACGCGGCGCGGGAGTCG TTCGTGCCCACGGTC MSMEG_3874 3947354 - 3947998 + | transcriptional regulator, TetR family protein MSMEG_3876 3947995 - 3949062 + | phosphotransferase enzyme family protein, putative cobK 3949798 - 3949043 - | cobalt-precorrin-6x reductase cobM 3950550 - 3949795 - | precorrin-4 C11-methyltransferase cobL 3951731 - 3950547 - | precorrin-6Y C5,15-methyltransferase (decarboxylating) MSMEG_3879 3952518 - 3951760 - | short chain dehydrogenase MSMEG_3880 3952554 - 3952973 + | nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase TERM 1513 3952982 - 3953010 + T 74 -10.9 -3.62046 | CAGCTGATCACCGCA CCGGCACCACGAC GAG GTCGTGCGGCTGG TTGTTGACCGACTGC MSMEG_3881 3954101 - 3952974 - | proline dipeptidase MSMEG_3882 3954516 - 3954112 - | glyoxalase family protein TERM 1514 3955456 - 3955514 + G 80 -17.7 -2.87527 | gap 6, opp_overlap 3955424, overlap 3955457 CGACGCCGACGGACA CCC-T--GCCGCTGGCC-GC-CGGCGACCCG GCA CGGGTCGCCGAGCTGGCC-GCGGCGTACGGG GTTTCCTCGTCGATC MSMEG_3883 3954552 - 3955568 + | 5'-3' exonuclease MSMEG_3884 3956438 - 3955575 - | hypothetical protein MSMEG_3885 3959176 - 3956438 - | DEAD/DEAH box helicase tatC 3960119 - 3959166 - | twin arginine-targeting protein translocase TatC TERM 1515 3960153 - 3960181 + r 76 -13.8 -3.14211 | gap 1, opp_overlap 3960135 3960136 GTGATCGAGCCGCTA CCCGCCCGCGCGG ATCA CCGCG-GGGCGGA TTGGTCGGCCGCGAT tatA 3960441 - 3960196 - | twin arginine-targeting protein translocase, TatA/E family protein MSMEG_3888 3961469 - 3960513 - | hypothetical protein TERM 1516 3960837 - 3960783 - G 83 -14.9 -3.67597 | gap 2 GTCGGCATCGAACAA CGACG-TGTCGGGG-CCTGCCGCCACC GCG GGCGGCGGCGGGGCCGCGGGATCGTCG AGCAGTTGGGCGTCG MSMEG_3890 3963837 - 3962479 - | proteasome component MSMEG_3891 3963990 - 3964871 + | hydrolase MSMEG_3892 3964940 - 3965479 + | hypothetical protein TERM 1517 3966558 - 3966519 - g 77 -18 -2.52464 | gap 1, opp_overlap 3966513 3966512 GGCCGTCGCAACGCA GCAGGACGCGGCCCTGGAT CTC ATCCAG-ACCGCGTCCTGA CGCGACTATTCGGTG MSMEG_3893 3965476 - 3966558 + | hypothetical protein MSMEG_3894 3967304 - 3966564 - | proteasome alpha subunit MSMEG_3895 3968143 - 3967301 - | proteasome beta subunit MSMEG_3896 3968403 - 3968209 - | hypothetical protein MSMEG_3897 3970007 - 3968511 - | proteasome component thpD 3970934 - 3970017 - | ectoine hydroxylase ectC 3971356 - 3970964 - | L-ectoine synthase ectB 3972654 - 3971368 - | diaminobutyrate--2-oxoglutarate aminotransferase TERM 1518 3972682 - 3972662 - R 78 -3.9 -4.75308 | opp_overlap 3972666, overlap 3972654 AGCAACACGGAAAAA TCCTCCGAT GGA ATCGGTTGA TCAAACAGGTTGAGA ectA 3973267 - 3972734 - | L-2,4-diaminobutyric acid acetyltransferase TERM 1519 3973940 - 3973907 - R 74 -10.9 -3.6682 | gap 1 GGTGAGGCAGGCAAA GCCATG-GCCGGACGC GCA GTGGCCGGCTCACGGC CACCCGGTGCCGAAT MSMEG_3902 3976076 - 3974235 - | ATPase, AAA family protein TERM 1520 3976538 - 3976496 - g 73 -16.3 -2.62184 | gap 1, overlap 3976519 GGCGTGTCGAGAGCA TCGCCGCCGACCGCGCGTAC AACC GTGC-CGCGGCCGACGGCAA GTTCCCGCTGACGTT MSMEG_3903 3976222 - 3976725 + | low molecular weight antigen MTB12 TERM 1521 3976800 - 3976750 - g 86 -19.1 -3.19246 | TGAACCGGAACCGAA TCG-CAGTCCTGAGTGCCGCCACGG TCA CCGTGGCGGCACTCGGG-CTATCGG GATGCGGTGGCGACG MSMEG_3904 3976734 - 3977297 + | LppK protein MSMEG_3905 3977303 - 3977596 + | hypothetical protein MSMEG_3906 3978450 - 3977602 - | tRNA (adenine-N(1)-)-methyltransferase TERM 1522 3978601 - 3978546 - g 77 -15.3 -3.19463 | gap 2, opp_overlap 3978546 3978546 GGCATGAGTGAGGAA CCCGTGCGCGGCGCTG-C-CGGCCGGC GCCG GCCGGCCCTGTCACCGTCGCGCGCGAG CGATTTCAAGCAGTG MSMEG_3907 3978534 - 3979409 + | RecB family protein exonuclease TERM 1523 3980031 - 3980018 - g 82 -3.9 -5.0538 | CTGGATCCGAAAAAA TTCAT CTTC ATGAA CACCGACACCACCGT MSMEG_3908 3979406 - 3980203 + | hypothetical protein MSMEG_3910 3980200 - 3980706 + | hypothetical protein MSMEG_3909 3981236 - 3980700 - | hypothetical protein MSMEG_3911 3981558 - 3981247 - | oxidoreductase MSMEG_3912 3982166 - 3981603 - | acetoacetyl-CoA reductase MSMEG_3914 3982213 - 3983361 + | beta-lactamase TERM 1524 3983659 - 3983684 + T 71 -11.8 -3.28712 | opp_overlap 3983644 CGTTGCGGGCTGCGG CGGCGTCGCG CGCGGT CGCGACGACG TTGTGCCCGGCGGCC MSMEG_3915 3984850 - 3983780 - | NAD-dependent alcohol dehydrogenase MSMEG_3916 3985164 - 3984847 - | hypothetical protein MSMEG_3917 3986388 - 3985843 - | hypothetical protein MSMEG_3918 3986902 - 3986453 - | hypothetical protein TERM 1525 3986917 - 3986907 - H 80 -8.2 -4.3898 | overlap 3986908 AGGACCCGCACAAAA CGCG CGT CGCG ACGGGCCCGGGCCTC MSMEG_3919 3987401 - 3988021 + | hypothetical protein TERM 1526 3988084 - 3988054 - g 78 -6.1 -4.57569 | gap 1, opp_overlap 3988077, overlap 3988056 CCAGCCGGGCAAAAA CACCCG-AGACCCG GGCA CGGATCCGCCGGTG GGCGTTACTCAAGCG MSMEG_3920 3988011 - 3988562 + | hypothetical protein MSMEG_3922 3988559 - 3989284 + | hypothetical protein MSMEG_3921 3990024 - 3989281 - | hypothetical protein TERM 1527 3990077 - 3990119 + H 95 -12 -4.33274 | opp_overlap 3990102, overlap 3990079 3990102 3990107 CGCAGTCGATCCATC CAGCCCACG-CGGCGACCTT AACTG ACGG-CGCCGGCGTGGGCCG TTTTCGTCCTGTCCG MSMEG_3923 3990221 - 3990724 + | hypothetical protein MSMEG_3924 3991974 - 3990727 - | peptide synthetase ScpsB, putative MSMEG_3925 3992167 - 3993123 + | AttM/AiiB family protein TERM 1528 3993162 - 3993140 - T 71 -9.9 -3.72576 | gap 1, overlap 3993141 GGTCGCGCGATCAAA TGCTGCCGGG CATC CCCGGCA-CA CCCGCAGACGCCGGC MSMEG_3926 3996024 - 3993256 - | cation-transporting ATPase Pma1 MSMEG_3927 3996526 - 3996059 - | peptidase M52, hydrogen uptake protein MSMEG_3928 3997815 - 3996523 - | [NiFe] hydrogenase, alpha subunit, putative MSMEG_3929 3998570 - 3997812 - | [NiFe] hydrogenase, delta subunit, putative MSMEG_3930 3999386 - 3998571 - | [NiFe] hydrogenase, gamma subunit, putative MSMEG_3931 4000485 - 3999400 - | [NiFe] hydrogenase, beta subunit, putative MSMEG_3932 4000945 - 4000508 - | 14 kDa antigen TERM 1529 4001432 - 4001444 + Gr 71 -9.1 -3.80573 | TCGCCGCAGATCTCC CCGTG CCG CACGG TTTCGTGGTGATGCG TERM 1530 4001604 - 4001660 + Gr 71 -12.8 -2.96452 | gap 1, opp_overlap 4001598 4001599, overlap 4001605 GGTGAACAAGGCCGG GCTGAGCCCGAGCGTGCGGGACGCGAC GCTG GCCGCGTACCGCGCGCT-GGGTACCGA TGTGGTTGTGGCCGT TERM 1531 4003530 - 4003572 + Gr 80 -11.9 -3.73783 | overlap 4003534 CAACCCCGACGCGGC CGGCGCGGCGCGCCGT-GCGG TCG CCGCGGCCGAGCGCCGC-CTG TTGTTGGATTCGGTC TERM 1532 4003534 - 4003569 + Gr 75 -14.6 -2.66329 | gap 1, overlap 4003530 CCCGACGCGGCCGGC GCGGCGCGCCGT-GCGG TCG CCGCGGCCGAGCGCCGC CTGTTGTTGGATTCG MSMEG_3933 4004869 - 4003514 - | hypothetical protein MSMEG_3934 4001317 - 4003635 + | phosphoenolpyruvate synthase MSMEG_3935 4005712 - 4004936 - | hypothetical protein MSMEG_3936 4006746 - 4005847 - | universal stress protein family protein MSMEG_3937 4007213 - 4006743 - | hypothetical protein MSMEG_3938 4006998 - 4007264 + | hypothetical protein MSMEG_3939 4007445 - 4008236 + | universal stress protein family protein MSMEG_3940 4008412 - 4009293 + | universal stress protein family protein MSMEG_3941 4010953 - 4009310 - | GAF family protein MSMEG_3942 4012672 - 4011176 - | hypothetical protein TERM 1533 4011969 - 4011951 - G 81 -10.2 -4.38712 | overlap 4011952 TCCATCGCCAGAAAA GCGGCGTC ATC GACGCCGT CGACATAGCGGAGAG TERM 1534 4011968 - 4011952 - G 72 -13.7 -3.22906 | overlap 4011951 CCATCGCCAGAAAAG CGGCGTC ATC GACGCCG TCGACATAGCGGAGA MSMEG_3943 4012832 - 4013794 + | hypothetical protein MSMEG_3944 4013788 - 4014441 + | two component transcriptional regulatory protein devr MSMEG_3945 4015264 - 4014443 - | universal stress protein family protein MSMEG_3946 4015905 - 4015330 - | transmembrane protein TERM 1535 4016594 - 4016583 - g 81 -4.4 -4.85599 | TGCACCGCAGAAAAA TCGA CGCT TCGA GTTGACACTCAATCC MSMEG_3948 4016065 - 4017468 + | acyltransferase, ws/dgat/mgat subfamily protein MSMEG_3947 4018450 - 4017452 - | 6-phosphofructokinase isozyme 2 TERM 1536 4018879 - 4018893 + G 76 -7.1 -4.2528 | GCGAATATCAGCGCC GCCCA TCATC TGGGC TTTCTTGAGTTCAGC MSMEG_3949 4018666 - 4018917 + | hypothetical protein TERM 1537 4018986 - 4018974 - f 75 -6.9 -4.37886 | opp_overlap 4018974 GGACCGGCGAGAAAA GGACC AAA GGCCC TTCTGTCCCGATCGC TERM 1538 4019267 - 4019251 - g 72 -5.7 -4.30576 | overlap 4019252 GTGTCAGGAGGAAAA CGCCCGC CAC GCGATCG AGCAGGCCCAGAAGG MSMEG_3950 4019051 - 4019935 + | universal stress protein family protein TERM 1539 4020266 - 4020250 - g 71 -10.1 -3.68222 | overlap 4020251 CCCCAACCCCAACAA CCGCGAG CAT CTCGCGA ACATCCAGTTCAGCC MSMEG_3952 4020005 - 4020961 + | hypothetical protein MSMEG_3951 4021870 - 4020929 - | hypothetical protein MSMEG_3953 4022955 - 4021891 - | hypothetical protein MSMEG_3954 4023070 - 4025790 + | trehalose 6-phosphate phosphorylase MSMEG_3955 4026797 - 4025793 - | hypothetical protein TERM 1540 4026168 - 4026208 + g 70 -12.4 -3.28712 | opp_overlap 4026167, overlap 4026187 4026204 CGCGCCCGCGAACAT GCGCGACGACAGCGGCGC ACCGG GCTCCGGTTTCGGCGCGC TTCTGGCGGGGACGC MSMEG_3956 4027116 - 4026826 - | alkylhydroperoxidase AhpD MSMEG_3957 4028703 - 4027120 - | 13e12 repeat-containing protein TERM 1541 4028072 - 4028110 + g 71 -2.4 -4.56597 | gap 2, overlap 4028072 4028073 CCCTTGGTGCGTGGA TCGT--CGGGGCATTGCC CAGAC GACATTGCCCCGACACGG TTTTTCAACGCGACA MSMEG_3958 4029335 - 4028808 - | glyoxalase/bleomycin resistance protein/dioxygenase MSMEG_3959 4029539 - 4030411 + | transcriptional regulator MSMEG_3960 4030440 - 4030958 + | transcriptional regulator MSMEG_3961 4030991 - 4031584 + | transcriptional regulator TERM 1542 4031628 - 4031586 - T 100 -20.6 -3.74077 | opp_overlap 4031587 4031588 4031590, overlap 4031588 TCGCAGACAGGTAAA CAGATCGGGCGGTGCACCCG AAA CGGATGCACCGTCCGATCCT TCGTTGACGACGACG TERM 1543 4031587 - 4031627 + T 100 -21.9 -3.33696 | opp_overlap 4031586 4031588, overlap 4031588 4031590 CGCAGACAGGTAAAC AGATCGGGCGGTGCACCCG AAA CGGATGCACCGTCCGATCC TTCGTTGACGACGAC TERM 1544 4031626 - 4031588 - T 100 -25.4 -3.45231 | opp_overlap 4031587 4031588 4031590, overlap 4031586 GCAGACAGGTAAACA GATCGGGCGGTGCACCCG AAA CGGATGCACCGTCCGATC CTTCGTTGACGACGA TERM 1545 4031588 - 4031626 + T 100 -25.4 -2.60075 | opp_overlap 4031588 4031586, overlap 4031587 4031590 GCAGACAGGTAAACA GATCGGGCGGTGCACCCG AAA CGGATGCACCGTCCGATC CTTCGTTGACGACGA TERM 1546 4031590 - 4031624 + T 100 -22.2 -2.84098 | opp_overlap 4031588 4031586, overlap 4031588 4031587 AGACAGGTAAACAGA TCGGGCGGTGCACCCG AAA CGGATGCACCGTCCGA TCCTTCGTTGACGAC MSMEG_3962 4032854 - 4031670 - | lactate 2-monooxygenase TERM 1547 4031919 - 4031901 - G 71 -10.2 -3.73068 | overlap 4031903 CCCGGAATCGAACAA CACCGGTG TGT CACCGGAG GCCTTGACGACCTCG TERM 1548 4032937 - 4032913 - RH 86 -7 -4.85599 | CGCATCGCACAAAAA GCGATGGGGC CTGTC GACCCAACGC AAACCAGCGTCGGAC MSMEG_3963 4033297 - 4033091 - | hypothetical protein MSMEG_3964 4033163 - 4034893 + | pyruvate dehydrogenase MSMEG_3965 4034909 - 4035196 + | hypothetical protein MSMEG_3966 4035225 - 4035536 + | hypothetical protein MSMEG_3967 4036224 - 4035550 - | TonB-dependent receptor MSMEG_3968 4036456 - 4036208 - | hypothetical protein MSMEG_3969 4036668 - 4036264 - | hypothetical protein MSMEG_3971 4035904 - 4036752 + | hypothetical protein MSMEG_3970 4038121 - 4036718 - | glutamyl-tRNA(Gln) amidotransferase subunit A MSMEG_3972 4038226 - 4039044 + | transcriptional regulator, LysR family protein MSMEG_3973 4041021 - 4039051 - | N-methylhydantoinase TERM 1549 4042630 - 4042647 + H 71 -14.1 -2.66216 | overlap 4042629 TTTGCGTCGCAGGAT GCGCGCG ACAT CGCGCGC CTTGTCCTCATCGAG MSMEG_3975 4043213 - 4044805 + | regulatory protein, putative MSMEG_3976 4045796 - 4045146 - | DNA-binding protein TERM 1550 4045274 - 4045311 + g 70 -3.9 -4.40963 | GCCACACCAGGTCGC GGGCGGCGGCGAGGGTG AGTC CCTTTTTGAGGCCGCCC TTCTTTTTGAGCAGT MSMEG_3977 4045998 - 4046852 + | hypothetical protein ampC 4046936 - 4048078 + | beta-lactamase TERM 1551 4048336 - 4048352 + T 80 -15.1 -3.06696 | GTCGGGTCCGACGCC CGCGGCG GCT CGCCGCG TGTCTTCCGCGACAG MSMEG_3980 4049669 - 4049025 - | transcriptional regulator, GntR family protein MSMEG_3981 4050916 - 4049735 - | L-carnitine dehydratase/bile acid-inducible protein F MSMEG_3982 4052046 - 4050913 - | acyl-CoA dehydrogenase TERM 1552 4052365 - 4052381 + H 71 -4.3 -4.47183 | overlap 4052366 AGCCCACTCGTCACG TGATCGC GTC GCGAACG TTTCTTTCAGTGCTG MSMEG_3984 4053599 - 4054810 + | transposase IS116/IS110/IS902 MSMEG_3985 4055023 - 4056354 + | integral membrane transport protein MSMEG_3986 4056401 - 4058032 + | acetyl-coenzyme A synthetase MSMEG_3987 4058087 - 4059460 + | FAD dependent oxidoreductase MSMEG_3988 4060481 - 4059480 - | transcriptional regulator, AsnC family protein MSMEG_3989 4060590 - 4061819 + | peptidase M20D, amidohydrolase MSMEG_3990 4061819 - 4063096 + | putative transporter MSMEG_3991 4063093 - 4063911 + | cyclase MSMEG_3992 4065294 - 4063918 - | integral membrane transport protein MSMEG_3993 4066229 - 4065447 - | Asp/Glu racemase MSMEG_3994 4067007 - 4066219 - | short chain dehydrogenase MSMEG_3995 4068380 - 4067064 - | N-carbamoyl-L-amino acid amidohydrolase hydA 4069888 - 4068425 - | dihydropyrimidinase MSMEG_3997 4070103 - 4071197 + | regulatory protein MSMEG_3998 4072320 - 4071433 - | MmsAB operon regulatory protein TERM 1553 4072464 - 4072489 + H 73 -6.1 -4.34263 | opp_overlap 4072471, overlap 4072468 GGTGACCCGCATTCG TAACCGATGCC CGCG GGCATCGTTGA TTTCTGTTGTTACGC TERM 1554 4072468 - 4072485 + H 77 -11.3 -3.71851 | opp_overlap 4072471, overlap 4072464 ACCCGCATTCGTAAC CGATGCC CGCG GGCATCG TTGATTTCTGTTGTT MSMEG_3999 4072558 - 4073547 + | ABC transporter periplasmic-binding protein YphF TERM 1555 4074663 - 4074613 - g 74 -11 -3.72576 | opp_overlap 4074647 4074651 CCTGCGGTGATGAAA CGCAATGGCGTCGGGCTCACGCCC GAG GACCGCAAGCACGACGCGATCGTG CCGTTGCTCGGTGTC TERM 1556 4075068 - 4075093 + G 82 -20.5 -2.62184 | GACCGCCGAGTTCAT CGGCGTCGACG TCAC CGTCGACGCCG TCCTGTCCGCCGCGA MSMEG_4000 4073608 - 4075119 + | ABC transporter ATP-binding protein MSMEG_4001 4075142 - 4076146 + | ribose transport system permease protein RbsC MSMEG_4002 4076191 - 4077273 + | oxidoreductase, zinc-binding dehydrogenase family protein TERM 1557 4077547 - 4077521 - g 70 -12.2 -3.29144 | overlap 4077509 TTACGGCGGGGACAA GACCTGGCCTGC CCC GCAGGGCTGGTC GTCACCGCAACAGTG MSMEG_4003 4077270 - 4078223 + | hypothetical protein MSMEG_4004 4078220 - 4078969 + | 3-oxoacyl-[acyl-carrier-protein] reductase MSMEG_4005 4078966 - 4079841 + | calcium-binding protein MSMEG_4006 4081382 - 4079904 - | transcriptional regulator, CdaR, putative MSMEG_4007 4081401 - 4082390 + | oxidoreductase, 2OG-Fe(II) oxygenase family protein MSMEG_4008 4082574 - 4083587 + | oxidoreductase, 2OG-Fe(II) oxygenase family protein MSMEG_4009 4083529 - 4083852 + | vanillate O-demethylase oxidoreductase MSMEG_4010 4083868 - 4084278 + | glyoxalase family protein MSMEG_4011 4084288 - 4085598 + | putative pyrimidine permease RutG hydA 4085598 - 4087019 + | dihydropyrimidinase MSMEG_4013 4087035 - 4088054 + | oxidoreductase MSMEG_4014 4088051 - 4089346 + | N-carbamoyl-L-amino acid amidohydrolase MSMEG_4015 4089532 - 4089371 - | hypothetical protein MSMEG_4016 4089336 - 4089491 + | hypothetical protein MSMEG_4017 4089488 - 4089820 + | BmyD protein MSMEG_4018 4090581 - 4089826 - | nucleotidyltransferase domain-containing protein MSMEG_4019 4092508 - 4090775 - | AMP-dependent synthetase and ligase MSMEG_4020 4093307 - 4092516 - | enoyl-CoA hydratase/isomerase family protein MSMEG_4021 4093456 - 4093304 - | hypothetical protein MSMEG_4022 4093747 - 4094346 + | TetR-family protein transcriptional regulator MSMEG_4023 4096099 - 4094612 - | oxidoreductase MSMEG_4024 4097857 - 4096520 - | transcriptional regulator, TetR family protein TERM 1558 4097284 - 4097267 - G 79 -4.9 -4.7373 | gap 1, overlap 4097268 GTAGTTGACCAAAAA TTGGGTCG CGT CGACC-AA TGGCCATTCCTGCCG MSMEG_4025 4098918 - 4097995 - | transcriptional regulator, LysR family protein TERM 1559 4099396 - 4099384 - H 71 -9.1 -3.81146 | opp_overlap 4099378 CGGTCGAACGAACAA GGCTC GAC GAGCC ATGGACTTTCTGGGT MSMEG_4026 4099556 - 4099693 + | hypothetical protein MSMEG_4027 4099750 - 4100754 + | zinc-containing alcohol dehydrogenase superfamily protein MSMEG_4028 4101018 - 4100797 - | hypothetical protein MSMEG_4029 4101849 - 4101244 - | hypothetical protein TERM 1560 4101371 - 4101341 - G 75 -8.2 -4.24342 | overlap 4101343 4101344 TCTTTTATGAAGAAA TAGGCACATGCGGG TGC CTCGCATGCGCGCA GCATCTCCCAGCGAG MSMEG_4030 4102269 - 4102760 + | hypothetical protein MSMEG_4031 4102959 - 4103162 + | hypothetical protein MSMEG_4032 4104352 - 4103378 - | zinc-binding alcohol dehydrogenase TERM 1561 4104159 - 4104140 - G 70 -9.2 -3.86015 | overlap 4104141 CATCCCGGGCACAAA CGGCGGAC GCCG GCCCGCCA TACGCACAGCATGAC MSMEG_4033 4104476 - 4105129 + | TetR-family protein transcriptional regulator MSMEG_4034 4105207 - 4106040 + | NAD dependent epimerase/dehydratase family protein MSMEG_4035 4106928 - 4106113 - | citrate synthase MSMEG_4036 4108465 - 4106918 - | crotonobetaine/carnitine-CoA ligase MSMEG_4037 4108932 - 4108522 - | hypothetical protein TERM 1562 4109740 - 4109722 - g 87 -8.8 -4.67608 | opp_overlap 4109736, overlap 4109724 GACCCCAAGAGAAAA GGCGCG GCTGTTT CGCGCC GCAGCGGCAGTCGTG MSMEG_4038 4109489 - 4110982 + | vanillin dehydrogenase MSMEG_4039 4110996 - 4112135 + | aryl-alcohol dehydrogenase MSMEG_4040 4112188 - 4112853 + | hypothetical protein TERM 1563 4113141 - 4113173 + G 77 -11.4 -3.86015 | gap 1, opp_overlap 4113140 CCACGGCTCAAGGAG GTCATGCAGAGTGCC GTAA GGCA-TCTGCACGAC TTTGTCCGGGAAGTC MSMEG_4041 4113063 - 4113947 + | hydroxyquinol 1,2-dioxygenase TERM 1564 4114421 - 4114391 - g 74 -13.2 -3.34398 | overlap 4114389 4114393 GTGGCGCTGGAAACA TACGGCGCTCGGCG AGC CGCCCAACGCCGTG GCGGCGCGCAACTCG TERM 1565 4114419 - 4114393 - g 80 -15.8 -3.24232 | overlap 4114391 4114389 GGCGCTGGAAACATA CGGCGCTCGGCG AGC CGCCCAACGCCG TGGCGGCGCGCAACT MSMEG_4042 4114106 - 4114864 + | transcriptional regulator, GntR family protein MSMEG_4043 4114887 - 4115840 + | amidohydrolase 2 MSMEG_4044 4117693 - 4115906 - | GAF domain-containing protein MSMEG_4045 4118019 - 4117738 - | muconolactone delta-isomerase MSMEG_4046 4119176 - 4118016 - | L-carnitine dehydratase/bile acid-inducible protein F TERM 1566 4118161 - 4118118 - G 83 -12.2 -4.06055 | opp_overlap 4118117 4118143 ACTTGCGAAACGAAA CGGCGCCGCCACCACGGGCA CGGT CGCCCCGGACGGCAGCGTCG CTGTCGTCCAGCGAT MSMEG_4047 4120141 - 4119176 - | dihydropteroate synthase MSMEG_4048 4121222 - 4120239 - | cyclase MSMEG_4049 4122713 - 4121265 - | sugar transporter, permease protein TERM 1567 4121330 - 4121346 + g 71 -2.9 -4.66609 | overlap 4121316 4121332 GCGCCTCGATCTCCG CATCGAG CGT TTCGAGG TTTTTCCCTCGGGTC TERM 1568 4122474 - 4122456 - G 70 -8.8 -3.86015 | GATCGTGGTGAGAAA CACCGGCC TTC GACCGATG CGGTCGGCCAGGCGG MSMEG_4050 4123459 - 4122773 - | hypothetical protein MSMEG_4051 4123735 - 4123604 - | hypothetical protein MSMEG_4052 4123893 - 4123732 - | hypothetical protein MSMEG_4053 4126841 - 4124109 - | transcriptional regulatory protein TERM 1569 4125715 - 4125687 - G 73 -9.5 -3.85698 | gap 1, opp_overlap 4125696, overlap 4125688 CGCCTGGGTGAGAAA TGCTGCGGCGGC GGCGAT GCCGCCGC-GCT GGTGAGCGCGGGTAG MSMEG_4054 4126984 - 4126850 - | hypothetical protein TERM 1570 4127342 - 4127357 + G 71 -11.8 -3.61517 | opp_overlap 4127322 CAGCCGCGGTATCGG CGCCGC CAGC GCGGCG TTGTTCGGCCAACGT MSMEG_4055 4127253 - 4128044 + | short-chain dehydrogenase/reductase SDR TERM 1571 4128088 - 4128074 - f 73 -5.6 -4.4078 | overlap 4128075 4128076 GTCTTGCAACCAAAA CCGGCG ACT CACCGA CTCGCCCATACGAAA MSMEG_4056 4128118 - 4128876 + | hypothetical protein TERM 1572 4129048 - 4129028 - f 73 -6.1 -4.36914 | GTCCGCTTGAGAAAA CAACACTCA ATT TGAGAGTCG ACAAGCTGCATCCTC MSMEG_4057 4129302 - 4129928 + | transcriptional regulator, GntR family protein MSMEG_4058 4129996 - 4131315 + | major facilitator superfamily protein MSMEG_4059 4131375 - 4132064 + | haloacid dehalogenase, type II MSMEG_4061 4133329 - 4133757 + | translation initiation inhibitor MSMEG_4062 4133790 - 4135040 + | glutamyl-tRNA(Gln) amidotransferase subunit A MSMEG_4063 4136236 - 4135328 - | amidohydrolase family protein TERM 1573 4136340 - 4136372 + r 74 -12.8 -3.23216 | gap 2, opp_overlap 4136338, overlap 4136339 AGTTTCCTAAGTACT CGA-TG-TGCCGGCCC TGG GGGCCGGCACCGGTCG TTCGTCCTAATGCGC MSMEG_4064 4137735 - 4136734 - | zinc-binding alcohol dehydrogenase MSMEG_4065 4139831 - 4138269 - | feruloyl-CoA synthetase TERM 1574 4138672 - 4138696 + g 81 -19.3 -2.8001 | overlap 4138660 4138674 TCCCCCGTATGCATC CAGCCGTCGCG GAT CGCGGCGGCTG TCTCCTGGGGCTTGT TERM 1575 4138674 - 4138694 + g 75 -16.1 -2.94595 | overlap 4138672 4138660 CCCCGTATGCATCCA GCCGTCGCG GAT CGCGGCGGC TGTCTCCTGGGGCTT TERM 1576 4139167 - 4139141 - G 81 -10 -4.2717 | ACGACGGGATGAAAA CGTGACGGCCCC CTT GGAGCAGTCCCG CGCTCCAGGACATGA MSMEG_4066 4141287 - 4139932 - | hypothetical protein TERM 1577 4140637 - 4140614 - G 82 -6.7 -4.67353 | gap 1, overlap 4140602 CCACCGAGGGAAAAA CCCACGAGCG CGACT CGCTC-CGGG TCGACCTCCGAGAAC TERM 1578 4140673 - 4140686 + g 71 -9.5 -3.78953 | GGCAAAGTCCACAGC GGCCG AGAC CGGCC TTTCGTAGTCCGGAT MSMEG_4068 4141519 - 4141653 + | hypothetical protein MSMEG_4067 4142620 - 4141631 - | zinc-containing alcohol dehydrogenase superfamily protein MSMEG_4069 4142878 - 4142705 - | hypothetical protein MSMEG_4070 4142735 - 4143292 + | transcriptional regulator, TetR family protein, putative MSMEG_4072 4144114 - 4145160 + | ISMsm5, transposase MSMEG_4074 4146668 - 4147465 + | peroxisomal trans-2-enoyl-CoA reductase TERM 1579 4147809 - 4147843 + G 76 -14.3 -3.40403 | gap 1, overlap 4147810 ACGAGCGCTTCAGGA TCGCG-TCGTCGACCG GGTA CGGTCGGCGGGCGCGG TTCTGCTCGGCCCCA TERM 1580 4149342 - 4149364 + G 70 -12.7 -3.25823 | gap 1 CTCCGCCTTGTTCAC CGGGCTGCGC GGTC GCGC-GCCCG TTGATCTCGACGCCG MSMEG_4075 4147462 - 4149525 + | CoA-binding protein TERM 1581 4150729 - 4150694 - g 75 -6.6 -4.42206 | AACGAAACCAACAAA CGCGGCCTGAGCGCTC TGCT GAGCTTCCCGTCCGCG GGCACCGACCAGTGA MSMEG_4076 4149545 - 4150744 + | butyryl-CoA dehydrogenase TERM 1582 4151092 - 4151133 + G 71 -10.7 -3.54424 | opp_overlap 4151121 CTAGAGCTCAGCCTG GCCGGAGACATCCGGATCG CCGA CGAAACGGCCGTCTTCGGC TTTCCCGAAATCCAG MSMEG_4077 4150741 - 4151499 + | enoyl-CoA hydratase MSMEG_4078 4151496 - 4152893 + | metabolite transport protein YaaU TERM 1583 4152936 - 4152958 + T 89 -16.3 -3.28712 | TGAGCCACGCACGTA GCCGCGCTG CCAAC CAGCGCGGC TTCTGCAACGGAGCG MSMEG_4079 4153683 - 4152916 - | putative hydrolase MSMEG_4081 4155111 - 4156322 + | transposase IS116/IS110/IS902 MSMEG_4082 4158410 - 4157064 - | monoxygenase MSMEG_4083 4159822 - 4158407 - | putative monooxygenase MSMEG_4084 4160979 - 4159822 - | putative acyl-CoA dehydrogenase MSMEG_4085 4162327 - 4161044 - | nitrilotriacetate monooxygenase component A TERM 1584 4162195 - 4162162 - G 71 -3.1 -4.64334 | gap 1, overlap 4162172 4162173 AATCGGCGAAGAAAA GCGCATCAAAGCCG CCTCGCT CGGCTTCC-CGCGC CAGGCTGAGGTAATG ssuD 4162905 - 4162324 - | nitrilotriacetate monooxygenase component A MSMEG_4087 4164401 - 4162983 - | major facilitator superfamily protein MSMEG_4088 4164825 - 4165133 + | transposase MSMEG_4089 4165130 - 4165990 + | transposase subunit MSMEG_4090 4166046 - 4166819 + | putative IclR family protein transcriptional regulator ssuD 4168717 - 4167383 - | nitrilotriacetate monooxygenase component A MSMEG_4092 4169806 - 4168736 - | alkanal monooxygenase TERM 1585 4169747 - 4169786 + g 70 -8.4 -3.87373 | gap 1, opp_overlap 4169742 4169741 GAGCAGGAATCCGAG CCTGAAC-GGGCGTCCGTC CTC GACGCCCGCCCCGATCCGG TTTGTGGCAACTCTC MSMEG_4093 4170839 - 4169808 - | oxidoreductase, aldo/keto reductase family protein MSMEG_4094 4172143 - 4170932 - | acyl-CoA dehydrogenase TERM 1586 4171274 - 4171238 - G 85 -17.9 -3.14132 | overlap 4171240 CTCGGCTGCCAGCAA CACCGCGGCCCGCGCGC CCT GTGCGCGAGCCGCGATC TCACCAACGGTCTGG TERM 1587 4171272 - 4171240 - G 90 -20.5 -3.13403 | overlap 4171238 CGGCTGCCAGCAACA CCGCGGCCCGCGCGC CCT GTGCGCGAGCCGCGA TCTCACCAACGGTCT MSMEG_4095 4173057 - 4172140 - | putative monooxygenase ssuD 4174289 - 4173054 - | nitrilotriacetate monooxygenase component A MSMEG_4097 4175515 - 4174286 - | acyl-CoA dehydrogenase domain-containing protein MSMEG_4098 4177173 - 4175512 - | ABC transporter ATP-binding protein MSMEG_4099 4178078 - 4177170 - | ABC transporter permease protein MSMEG_4100 4179127 - 4178075 - | ABC transporter permease protein MSMEG_4101 4180772 - 4179138 - | ABC-type transporter, substrate binding protein TERM 1588 4179474 - 4179456 - G 70 -8.8 -3.91897 | overlap 4179457 4179459 CCCCTGAGTCAGAAA CCAGTCGG TGG CCGACTGC TCCTGGGCCTCGTAC MSMEG_4102 4181131 - 4182240 + | hypothetical protein MSMEG_4103 4182282 - 4183370 + | alkanesulfonate monooxygenase TERM 1589 4184077 - 4184107 + G 86 -6.7 -4.93365 | overlap 4184084 GTCGATCGCGTTCGT CGGGCAAGCCGGC TCGGT GTCGGCGTTCCTG TTTTTAGTTATCGCC MSMEG_4104 4183367 - 4184623 + | transporter, major facilitator family protein MSMEG_4105 4185564 - 4184704 - | transposase subunit MSMEG_4106 4185869 - 4185561 - | transposase MSMEG_4107 4186634 - 4185948 - | phosphoglycerate mutase, putative pntB 4188083 - 4186644 - | NAD(P) transhydrogenase, beta subunit pntA 4189649 - 4188102 - | NAD(P) transhydrogenase subunit alpha TERM 1590 4188428 - 4188456 + g 82 -6.5 -4.78572 | overlap 4188429 CGGCGAACGCCACTC CCAGCCGGCGCCC GGT GGACATCGGCTGC TTTTCTTCCTTGACC MSMEG_4110 4190623 - 4189781 - | 3-hydroxyacyl-CoA dehydrogenase MSMEG_4111 4191806 - 4190676 - | alpha-methylacyl-CoA racemase MSMEG_4112 4193470 - 4191803 - | cyclohexanecarboxylate-CoA ligase MSMEG_4113 4194528 - 4193473 - | acyl-CoA dehydrogenase menB 4195301 - 4194525 - | naphthoate synthase MSMEG_4115 4196184 - 4195303 - | 3-hydroxybutyryl-CoA dehydrogenase MSMEG_4116 4197084 - 4196194 - | 3-hydroxybutyryl-CoA dehydrogenase MSMEG_4117 4197868 - 4197104 - | 2-deoxy-D-gluconate 3-dehydrogenase MSMEG_4118 4199088 - 4197865 - | acyl-CoA dehydrogenase TERM 1591 4198081 - 4198099 + g 74 -13.8 -3.26471 | CATGATGCCGATCTG CCCGGGCG TGA CGTCCGGG TTCGTGTCGACCTGG MSMEG_4119 4199873 - 4199085 - | 3-hydroxybutyryl-CoA dehydratase MSMEG_4120 4201099 - 4199870 - | CAIB/BAIF family protein MSMEG_4121 4202099 - 4201359 - | GntR-family protein transcriptional regulator MSMEG_4122 4203609 - 4202248 - | major facilitator family protein transporter TERM 1592 4203048 - 4203037 - G 72 -3.6 -4.56597 | CGCGCTGGCCAAAAA CGGC ACTC GCCA GCCCCAGCTCATCAT TERM 1593 4203395 - 4203348 - G 70 -12 -3.32294 | gap 1, overlap 4203390 GCAAACTCGTGACAA GCATTGTCTTCCGGCCCACCCGG TCG CCGAAGTGGCCG-AAGACGATGC CACCGAGCGGTCTTA MSMEG_4123 4203971 - 4204870 + | 3-hydroxyisobutyrate dehydrogenase MSMEG_4124 4204972 - 4206159 + | hypothetical protein MSMEG_4125 4206993 - 4206211 - | oxidoreductase, short chain dehydrogenase/reductase family protein MSMEG_4126 4207206 - 4207916 + | hydrolase, isochorismatase family protein TERM 1594 4208084 - 4208098 + T 75 -7.1 -4.40237 | GGGCAGGCAGTACTG GCTGG TCTGT CCAGC TTTTCCTATGTGCTC MSMEG_4127 4209542 - 4208139 - | TnpC protein MSMEG_4128 4210414 - 4209578 - | hypothetical protein TERM 1595 4209948 - 4209937 - G 72 -5.8 -4.3534 | overlap 4209939 CGCGAATCATGAAAA CACC GCCG GGTG TCAGCAGGTCATGGA TERM 1596 4210439 - 4210461 + H 75 -3.3 -4.82901 | overlap 4210442 CTCCGTCTGCTCGGC GACTGCCCG CCAAC CGTGCATTC TTTTTATCACACCCG MSMEG_4129 4210513 - 4211103 + | hypothetical protein MSMEG_4131 4211146 - 4211262 + | hypothetical protein MSMEG_4130 4212110 - 4211259 - | polysaccharide deacetylase family protein TERM 1597 4212768 - 4212728 - g 82 -11.8 -4.15565 | overlap 4212733 GGGATCATGGGAAAA GCACACGCGCTCTTGGAG TCTCT CTCCGAGAGCGCGGACAC CGACACGCCGCCGAC TERM 1598 4212763 - 4212733 - g 78 -16.9 -3.10537 | overlap 4212728 CATGGGAAAAGCACA CGCGCTCTTGGAG TCTCT CTCCGAGAGCGCG GACACCGACACGCCG MSMEG_4132 4212404 - 4212793 + | putative transposase MSMEG_4133 4212793 - 4213806 + | transposase TERM 1599 4215276 - 4215262 - T 75 -7.1 -4.35518 | overlap 4215275 AACGCCATAGGAAAA GCTGG GCAGA CCAGC GGCTACACGCCGCCC MSMEG_4135 4216120 - 4215569 - | lysine decarboxylase superfamily protein TERM 1600 4215971 - 4215985 + g 71 -10 -3.76402 | ACCCGCTGCCTGAAC CTCGTC GGC GACGAG TTTCATGAGTCCGGT MSMEG_4136 4216742 - 4216158 - | dTDP-glucose 4,6-dehydratase MSMEG_4137 4216960 - 4216742 - | hypothetical protein MSMEG_4138 4217351 - 4218319 + | aliphatic nitrilase MSMEG_4140 4219709 - 4221142 + | GntR-family protein transcriptional regulator MSMEG_4141 4221338 - 4222225 + | hypothetical protein MSMEG_4142 4223022 - 4222396 - | transcriptional repressor, TetR family protein, putative TERM 1601 4222929 - 4222959 + g 70 -12.5 -3.37612 | gap 1, opp_overlap 4222927 4222924 TCTCGACGAACAACG CGATCGCGGCCGCG AACA CGCGGTCGCGC-CG TTCGTTGCGCTTGCG MSMEG_4143 4223158 - 4223451 + | hypothetical protein MSMEG_4144 4223495 - 4224433 + | transcriptional regulator, LysR family protein TERM 1602 4224572 - 4224555 - T 73 -14.1 -2.78816 | CCAGGGCGCACCATA GGGCCGG CTCG CCGGCCC GCACGCGCCGAACGA TERM 1603 4224617 - 4224601 - T 72 -10.9 -3.51118 | overlap 4224594 GAGACAAACGCAGAA GTGCTGT CCT ACAGCAC TAGTGCCCGATGTGG MSMEG_4145 4225301 - 4224738 - | cupin 2 protein MSMEG_4146 4225664 - 4226641 + | quinone oxidoreductase MSMEG_4147 4226696 - 4227970 + | major facilitator superfamily protein MFS_1, putative MSMEG_4148 4229016 - 4228090 - | lipase MSMEG_4149 4229192 - 4230127 + | acetaldehyde dehydrogenase TERM 1604 4230967 - 4230992 + G 72 -6.9 -4.36914 | overlap 4230965 CGGCAGACCCTGACA CTTGGATACGC AGGT GTGTATTCGAG TTTTCTGCGGCACGC MSMEG_4150 4230124 - 4231164 + | 4-hydroxy-2-ketovalerate aldolase MSMEG_4151 4231424 - 4231173 - | hypothetical protein MSMEG_4152 4232374 - 4231421 - | phenoxybenzoate dioxygenase beta subunit MSMEG_4153 4232835 - 4232377 - | cytochrome P450 MSMEG_4154 4232893 - 4234068 + | transposase, Mutator family protein MSMEG_4155 4234097 - 4235137 + | transposase A TERM 1605 4235167 - 4235119 - f 74 -11.1 -3.59979 | gap 1 CTGGTTCATCGGAAA GGCCCAG-GTCAAACTGTGACC GCCCTG GATCCCAACTCGACGCTGGGCC TGCTGGGCCGGCTCA MSMEG_4156 4235134 - 4237359 + | putative transposase MSMEG_4157 4237349 - 4237777 + | putative transposase MSMEG_4158 4237954 - 4238103 + | putative transposase MSMEG_4159 4239460 - 4238141 - | IS6120, transposase MSMEG_4160 4239756 - 4239604 - | hypothetical protein MSMEG_4161 4239712 - 4240125 + | hypothetical protein MSMEG_4162 4241589 - 4240426 - | hypothetical protein MSMEG_4163 4242311 - 4241589 - | 3-oxoacyl-[acyl-carrier-protein] reductase MSMEG_4164 4243027 - 4242311 - | 3-hydroxybutyryl-CoA dehydratase TERM 1606 4242958 - 4242968 + g 75 -8.2 -4.14739 | opp_overlap 4242958 4242955 GCAGTTGAGAACTCA GCGC ATT GCGC TTTTGCGGTCGGTCC MSMEG_4165 4244478 - 4243036 - | [NAD+] benzaldehyde dehydrogenase MSMEG_4166 4245649 - 4244495 - | acyl-CoA dehydrogenase MSMEG_4167 4246779 - 4245646 - | alcohol dehydrogenase B MSMEG_4168 4248370 - 4246781 - | propionate CoA-transferase MSMEG_4169 4249077 - 4248367 - | 3-oxoacyl-[acyl-carrier-protein] reductase MSMEG_4170 4250605 - 4249070 - | ribose transport ATP-binding protein RbsA TERM 1607 4249485 - 4249439 - G 83 -9.3 -4.57073 | opp_overlap 4249442 TAGTTCCTTGAAAAA CCGGTCGACGATCTCGGCGCC TTTGC GACGACGAAGCCATGGACCGG TGCTCATCGCGGCCA MSMEG_4171 4251639 - 4250602 - | ribose transport system permease protein RbsC TERM 1608 4251259 - 4251214 - G 82 -16.9 -3.30124 | gap 1 GGGCACCCGGCAGAA GGTGATCAGCACCCCGTTGAGG AAC CCGCA-CGCGGTGCCGACCACC AGGCTCAGCAGTACC MSMEG_4172 4252771 - 4251653 - | D-ribose-binding periplasmic protein RbsB MSMEG_4173 4253202 - 4252768 - | MaoC family protein MSMEG_4174 4253996 - 4253199 - | transcriptional regulator, IclR family protein TERM 1609 4253344 - 4253325 - G 78 -8.6 -4.37092 | ATCGTCCTCAGAAAA TCGGAAGA TCGG TCCTCCGA CGCACACTGAGGCAA MSMEG_4175 4254189 - 4254506 + | transcriptional regulator, ArsR family protein MSMEG_4176 4254503 - 4255015 + | hypothetical protein MSMEG_4178 4255057 - 4255647 + | flavodoxin/nitric oxide synthase MSMEG_4179 4257466 - 4256984 - | integral membrane protein hisG 4258396 - 4257530 - | ATP phosphoribosyltransferase hisE 4258680 - 4258399 - | phosphoribosyl-ATP pyrophosphatase TERM 1610 4258581 - 4258620 + g 70 -8.4 -3.92373 | gap 1 GTACGCCGGCGTCGA GCGCGGCGACCGTGCCGCT ACC GGCAGGACGGGT-CCGCGC TTTGTCGCTGAGCTC MSMEG_4182 4260226 - 4258730 - | arabinose-proton symporter MSMEG_4183 4260950 - 4260273 - | phosphoglycolate phosphatase, chromosomal MSMEG_4184 4261027 - 4261209 + | dTDP-glucose-46-dehydratase metH 4265009 - 4261269 - | B12-dependent methionine synthase TERM 1611 4262324 - 4262340 + g 76 -13.7 -3.40403 | TCTCGGTCGCCTCGA GCAGCGC CGG GCGCTGC TTGTCGTCGAGCAGC MSMEG_4186 4265484 - 4266362 + | hypothetical protein MSMEG_4187 4267841 - 4266384 - | hypothetical protein MSMEG_4188 4268728 - 4267841 - | short chain dehydrogenase cysS 4269992 - 4268754 - | cysteinyl-tRNA synthetase MSMEG_4190 4270877 - 4270116 - | inositol monophosphatase family protein MSMEG_4191 4271867 - 4271019 - | hypothetical protein TERM 1612 4271686 - 4271696 + g 70 -8.2 -3.86015 | CACAGCGGCGCCTCG CCCG CCA CGGG TTTGTACACGCAGTG MSMEG_4192 4272438 - 4271851 - | hypothetical protein MSMEG_4193 4273145 - 4272474 - | phosphoglycerate mutase family protein MSMEG_4194 4273986 - 4273156 - | undecaprenyl pyrophosphate phosphatase TERM 1613 4274099 - 4274077 - R 77 -16.2 -2.62983 | GCGATCGGCAGATCA GGCGCGGGTC TCA GGCCCGCGCC AGGGGCTGCGCATCG MSMEG_4195 4274392 - 4274087 - | hypothetical protein MSMEG_4196 4274534 - 4275574 + | LppL protein MSMEG_4197 4275571 - 4275840 + | hypothetical protein TERM 1614 4276870 - 4276918 + G 74 -16 -2.77899 | overlap 4276867 GCGGCTTCACCACGC TGAGCGAGGCTGTCGGATCAGC CGTGC GCTGACCCGACAGCCTCGAAAA TCCTTGGTGCGCCGC pyrD 4275837 - 4276901 + | dihydroorotate dehydrogenase 2 MSMEG_4199 4277454 - 4276933 - | hypothetical protein MSMEG_4200 4278825 - 4277491 - | hypothetical protein MSMEG_4202 4280453 - 4279122 - | hypothetical protein MSMEG_4203 4282310 - 4280469 - | peptidase S8 and S53, subtilisin, kexin, sedolisin TERM 1615 4283733 - 4283712 - g 74 -12.3 -3.65991 | ACCGCGTCAACAGAA TCGACCGGC ACGA ACCGGTCGA CATATCGGAGTTACC MSMEG_4204 4282640 - 4283755 + | catalase TERM 1616 4286099 - 4286122 + G 78 -9.4 -4.25104 | GGCTGATGCTCTCGG CCGCCGACGC GGCC GCGCAGGCGG TTTTGCTGCACGACA MSMEG_4205 4283833 - 4286454 + | putative transcriptional regulator TERM 1617 4290613 - 4290575 - T 100 -15.3 -4.26076 | gap 1, opp_overlap 4290576 4290577, overlap 4290576 TTAGCGTCAGGAAAA CTGGTTCTCACCGCGCCA CCGG TGGCGCGGTGAGGTCC-G TTTCACCAGGTCAGC TERM 1618 4290613 - 4290576 - T 82 -15.5 -3.15324 | opp_overlap 4290576 4290577, overlap 4290575 TAGCGTCAGGAAAAC TGGTTCTCACCGCGCCA CCGG TGGCGCGGTGAGGTCCG TTTCACCAGGTCAGC TERM 1619 4290576 - 4290613 + T 100 -19.9 -3.54424 | opp_overlap 4290575 4290576, overlap 4290577 TAGCGTCAGGAAAAC TGGTTCTCACCGCGCCA CCGG TGGCGCGGTGAGGTCCG TTTCACCAGGTCAGC TERM 1620 4290577 - 4290612 + T 100 -21.2 -2.72511 | opp_overlap 4290575 4290576, overlap 4290576 AGCGTCAGGAAAACT GGTTCTCACCGCGCCA CCGG TGGCGCGGTGAGGTCC GTTTCACCAGGTCAG MSMEG_4207 4291026 - 4290634 - | universal stress protein family protein TERM 1621 4290982 - 4291038 + g 72 -5.1 -4.51174 | gap 3 GATCCCGTGCTCGAC GGCGGCCCGG-C-CGAACG-GGTCCG CGCTGTAA CCGACCACGATCACGACTGGGCCGCC TTTTCCTTCTGATCC MSMEG_4208 4292567 - 4291023 - | integral membrane protein TERM 1622 4292220 - 4292268 + g 78 -14.4 -3.65522 | GGCGACGAACGATCC GATGGCCGCGGTCGCCAGCGCC TGTGC GGCACGGCCGGCCTTGGCCATC TTGTTGCCCTCGATC MSMEG_4209 4293100 - 4292564 - | integral membrane protein MSMEG_4210 4294080 - 4293097 - | secreted protein MSMEG_4211 4294185 - 4295864 + | two component system histidine kinase MSMEG_4212 4295857 - 4296519 + | transcriptional regulatory protein CitT MSMEG_4213 4296613 - 4297770 + | cytochrome P450 hydroxylase MSMEG_4214 4297888 - 4298610 + | glutamine amidotransferase MSMEG_4215 4298656 - 4299333 + | phosphoribosyltransferase MSMEG_4216 4299844 - 4299335 - | hypothetical protein TERM 1623 4299440 - 4299494 + g 74 -13.4 -3.31144 | CGCATCGACGTCATC TGCGGCCGTTTCGGCGGCGACCCCGT CTG ACATGGTCTCCTCCGAGGCCGCTGCA TTCTCGGCGTCCACC MSMEG_4217 4300757 - 4299939 - | DivIVA protein MSMEG_4218 4301288 - 4300998 - | transmembrane protein TERM 1624 4301291 - 4301280 - G 71 -2.2 -4.60487 | overlap 4301290 CAGGATCTGGAAAAA CAGC GACA ACTG AGCCGACCTCACTAC MSMEG_4219 4302095 - 4301451 - | hypothetical protein MSMEG_4220 4302954 - 4302079 - | hypothetical protein MSMEG_4221 4303643 - 4302930 - | hypothetical protein TERM 1625 4302989 - 4302963 - GH 100 -25.2 -2.98223 | CATCCACACCAGACA CGCCAGGCGCCC CGT GGGCGCCTGGCG TCGATGGCTGAACAG TERM 1626 4303376 - 4303357 - GH 74 -10 -3.68726 | AACACCGGAACACAA TCGGCGGT AACC ACCGCCAA AGCCAAACCGGGAAC MSMEG_4223 4303589 - 4303702 + | hypothetical protein ftsZ 4304846 - 4303689 - | cell division protein FtsZ MSMEG_4224 4304832 - 4304960 + | hypothetical protein MSMEG_4225 4306094 - 4305093 - | putative cell division protein FtsQ TERM 1627 4305155 - 4305173 + g 76 -3 -4.7497 | opp_overlap 4305155, overlap 4305159 CCGGCTGGGTCAACA GCGCCG CGAGTTT CAGCGC TTTTTCCTGGGTACG murC 4307539 - 4306091 - | UDP-N-acetylmuramate--L-alanine ligase murG 4308693 - 4307536 - | N-acetylglucosaminyl transferase ftsW 4310396 - 4308690 - | cell division protein FtsW TERM 1628 4308808 - 4308838 + g 70 -14.6 -2.73875 | overlap 4308805 GAGCGTCGCCGCGCG CCCGGGTCGGCCGT GCG GTGGCCGGCGCGGG TGGTCTTGCCCGCGG TERM 1629 4309151 - 4309093 - G 70 -15.1 -2.79183 | opp_overlap 4309101 4309133 GGGAGGCGCAGCAGA CGGTCC-ACCCGGTCGTCGCGGCCCGCGC GCA GCGCGG-CCACGGCGTCCGGTTCGTGCCG GGCGGCGTTGGTGAG TERM 1630 4309101 - 4309142 + g 93 -21.5 -3.14132 | gap 1, opp_overlap 4309093, overlap 4309133 CAGCAGACGGTCCAC CCGGTCGTCGCGGCCCGCGC GCA GCGCGG-CCACGGCGTCCGG TTCGTGCCGGGCGGC TERM 1631 4310262 - 4310303 + g 71 -11.5 -3.54741 | gap 1, overlap 4310264 GGTGCGCGGGACCTT GGT-CTCGGACTGGCCCGCC TCG GGCGTGCCGGTCTGGGCGTC TTTCGAGGCGTCGTC murD 4311882 - 4310401 - | UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase mraY 4312954 - 4311875 - | phospho-N-acetylmuramoyl-pentapeptide-transferase TERM 1632 4312792 - 4312816 + g 73 -7.7 -4.18488 | CGGCGAGGATCGCGA CGCCGCCCATC GAC GGTGTGCCGCG TTTCTTGGCGTGGCT MSMEG_4231 4314480 - 4312951 - | UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase murE 4316039 - 4314477 - | UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase MSMEG_4233 4318032 - 4316086 - | penicillin binding protein transpeptidase domain-containing protein MSMEG_4234 4319171 - 4318029 - | hypothetical protein mraW 4320151 - 4319171 - | S-adenosyl-methyltransferase MraW mraZ 4320740 - 4320309 - | cell division protein MraZ TERM 1633 4321240 - 4321217 - R 95 -10.2 -4.7373 | CGAGGGCATGAAAAA GGGGCAGCCC TCGC GGACCACCCC TGAGCCGTTGGCGCC MSMEG_4237 4321664 - 4321263 - | transmembrane protein MSMEG_4238 4321921 - 4322538 + | hypothetical protein MSMEG_4239 4322593 - 4323288 + | LppM protein MSMEG_4240 4323431 - 4324519 + | polyprenyl synthetase TERM 1634 4325882 - 4325905 + G 74 -13.2 -3.31461 | gap 1, overlap 4325849 CTGGTGCAGACCCGG CCCGGC-ATCG CGG CGATCGCCGGG TTCTCGACGTGGATC MSMEG_4241 4324544 - 4326061 + | integral membrane protein MSMEG_4242 4326532 - 4326128 - | transcriptional regulatory protein MSMEG_4243 4326578 - 4327846 + | serine/threonine-protein kinase PK-1 MSMEG_4244 4329262 - 4327868 - | 3-deoxy-7-phosphoheptulonate synthase MSMEG_4245 4329776 - 4329267 - | hypothetical protein MSMEG_4246 4330684 - 4329722 - | integral membrane protein TERM 1635 4330782 - 4330825 + G 81 -7.3 -4.63527 | gap 1, opp_overlap 4330814, overlap 4330783 4330784 GATGAGTAAGCGGCA GTCGCCCCGCGG-GGCTGGT TTGGC ACCAACCATCGCGTGGCGGG TTTTTCAGCTGCTGA MSMEG_4247 4330759 - 4332081 + | integral membrane protein TERM 1636 4332117 - 4332158 + T 71 -10.2 -3.65046 | gap 3, opp_overlap 4332101 4332098, overlap 4332109 4332098 4332114 4332118 CCCGCGGCGGCCTCG GGCAG-T--CGCGACGCCGGT TTG GCCGGCGCCGCGTCACCTGCC TTCTTCACGTCGGCG MSMEG_4248 4332823 - 4332098 - | 1-acylglycerol-3-phosphate O-acyltransferase TERM 1637 4332406 - 4332434 + g 70 -12.3 -3.30124 | GCACACCGGTCTGCA GCGCCAGGCGGGC CAG GCCCGTCTTGCCC TTGTAGAGCCTGCCG MSMEG_4249 4333337 - 4332930 - | hypothetical protein MSMEG_4250 4334611 - 4333334 - | putative membrane transport ATPase MSMEG_4251 4335049 - 4334612 - | cyclase/dehydrase MSMEG_4252 4335532 - 4335143 - | hypothetical protein TERM 1638 4335371 - 4335391 + g 71 -3.1 -4.57073 | GCCGGTCAACGCGCC GGTCACGGT CCA GCGGTGCCC TTTTTCCGCGCGGTC MSMEG_4254 4335624 - 4337423 + | AMP-binding enzyme MSMEG_4253 4338562 - 4337414 - | glycosyl transferase, group 1 family protein TERM 1639 4337452 - 4337486 + g 70 -12.1 -3.28712 | gap 2, opp_overlap 4337449, overlap 4337452 GGCCCGAGAGCAGTT C-GGC-GAGGCGGGCGC CCC GCGTCCGCCACTGCCAG TTGTCCAGCGCCCAG MSMEG_4255 4339400 - 4338603 - | hypothetical protein MSMEG_4256 4340625 - 4339480 - | NLP/P60 family protein TERM 1640 4340093 - 4340121 + g 72 -8.8 -4.07885 | overlap 4340082 4340107 ACTGCAGCGGCCTGC TCGGCCGCGG TCTTGGCCT CGGCGGCCGA TTTTGCCGACGCCTG MSMEG_4257 4341150 - 4340779 - | hypothetical protein trpD 4344149 - 4343055 - | anthranilate phosphoribosyltransferase MSMEG_4259 4341162 - 4343180 + | hypothetical protein MSMEG_4260 4344261 - 4344872 + | cytochrome c oxidase subunit 3 MSMEG_4261 4344911 - 4345717 + | ubiquinol-cytochrome c reductase cytochrome c subunit MSMEG_4262 4345696 - 4346922 + | ubiquinol-cytochrome c reductase iron-sulfur subunit MSMEG_4263 4346919 - 4348559 + | ubiquinol-cytochrome c reductase cytochrome b subunit TERM 1641 4348575 - 4348612 + T 100 -22.9 -4.98522 | opp_overlap 4348571 TCGCTGAGATACTCG GATCGCCGCAATTCCTC TTCG GAGGGGTTGCGGCGATC TTTTTATGTGCGCTT TERM 1642 4349090 - 4349038 - T 81 -14.2 -3.53012 | gap 2, overlap 4349023 4349020 CGGGCGTGCGCCAAA TGCCCACCCCGAGCG-GCGTGTC-GC GGA GCTGACACGCACGCTCGCGGTGCAAA TGGCCGCCCGCCCGC MSMEG_4264 4349701 - 4349138 - | hypothetical protein MSMEG_4265 4350594 - 4349701 - | MmpS3 protein TERM 1643 4350713 - 4350683 - gR 100 -23.4 -3.13432 | opp_overlap 4350675 GGCAACATTACCCAA CCGGCACCGCCGAT GAG ATCGACGGTGCCGG GTGTCGAGTGATTCG MSMEG_4266 4350575 - 4350724 + | hypothetical protein MSMEG_4267 4351189 - 4350770 - | cytochrome c oxidase polypeptide 4 MSMEG_4268 4352234 - 4351209 - | cytochrome c oxidase subunit 2 TERM 1644 4352316 - 4352371 + H 76 -13.8 -3.05816 | gap 1, opp_overlap 4352312 4352327 AGCGTAGACCACCCG GTTGCAACCCAGCGCAGCGACCG-GCG ATT CGCTCGGGTGCTGCGCTGGGCAACGCC TTCGATCAGACATAC TERM 1645 4352360 - 4352327 - H 73 -14.5 -2.52464 | gap 1, opp_overlap 4352316, overlap 4352312 CCCGGTTGCAACCCA GCGCAGCGACCG-GCG ATT CGCTCGGGTGCTGCGC TGGGCAACGCCTTCG TERM 1646 4353234 - 4353257 + G 82 -13.8 -3.78934 | opp_overlap 4353232 GTCGCCAAGCACATG CGCGCCGACG TGAC CGTCGGGGCG TTCTTGTCCGGGGGC asnB 4352394 - 4354370 + | asparagine synthase (glutamine-hydrolyzing) MSMEG_4270 4355369 - 4354392 - | adenosine kinase MSMEG_4271 4355564 - 4356217 + | hypothetical protein TERM 1647 4356194 - 4356241 + T 86 -18.4 -2.63913 | opp_overlap 4356218 4356221 GTGTGCTCGTACGTC CTACGCACAGGCGGCCAGTACT AAGC AGTACCGGCCGCCCGTCCGAAG TGATGTCAGGTGATC MSMEG_4272 4356611 - 4356255 - | HesB/YadR/YfhF family protein MSMEG_4273 4356838 - 4357524 + | integral membrane protein cobU 4357558 - 4358091 + | cobinamide kinase / cobinamide phosphate guanyltransferase TERM 1648 4358664 - 4358632 - g 87 -19.9 -3.04144 | TGGGCATCGGGAACA CGACCGCCGCGACCA CGC TGGTCGCGGCGCTCA GCGGCGCCGAACCGG cobT 4358088 - 4359143 + | nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase TERM 1649 4359202 - 4359258 + G 70 -8.6 -3.87815 | gap 3, overlap 4359201 TTCGCGTTCGGCACG GTGCTGC-CGGT--CCGCGCCTCGGCC GGGGTG GGCCGTGGCGCGCTCACCGCGCTGCCC TTTGTCGGCCTCGCG cobS 4359163 - 4359888 + | cobalamin synthase ilvE 4360991 - 4359885 - | branched-chain amino acid aminotransferase gcvT 4362138 - 4361041 - | glycine cleavage system aminomethyltransferase T MSMEG_4279 4362195 - 4363286 + | adenylate and guanylate cyclase catalytic domain-containing protein MSMEG_4281 4363291 - 4364850 + | leucyl aminopeptidase MSMEG_4280 4366583 - 4364847 - | short chain dehydrogenase TERM 1650 4364982 - 4365018 + g 93 -17.4 -3.65046 | gap 1 GGTGACGGCCTTGGC GACCTTCTCGGGCCCGT AGCG GCGGGCCTG-GAAGGTC TTCTTGACCTGGGCC TERM 1651 4366675 - 4366690 + r 80 -11.8 -3.76952 | AGCTTTCTTCCAGTT CGCGCC GCAT GGCGCG TTTGCGTTCGATGCG MSMEG_4282 4367005 - 4366658 - | hypothetical protein sucB 4367210 - 4368967 + | dihydrolipoamide acetyltransferase TERM 1652 4369704 - 4369658 - g 87 -18.1 -3.37796 | gap 2, overlap 4369663 GTTCACGATGGACAA CGACACGATGTCCGGCCCGGTGA ACG TCACCGGGCCGGCC-CCG-GTCA CCAACGCCGAGTTCA TERM 1653 4369700 - 4369663 - g 87 -19.9 -2.97245 | gap 1, overlap 4369658 CGATGGACAACGACA CGATGTCCGGCCCGGTGA ACG TCACCGGGCCGGCC-CCG GTCACCAACGCCGAG MSMEG_4284 4369020 - 4369928 + | hypothetical protein lipB 4369946 - 4370632 + | lipoyltransferase lipA 4370637 - 4371581 + | lipoyl synthase TERM 1654 4372093 - 4372083 - g 70 -8.2 -3.84406 | CGCGCAGGAGAAGAA GCGC ACC GCGC GCCTGGTCGGCGAGA MSMEG_4287 4371586 - 4372338 + | integral membrane protein TERM 1655 4372875 - 4372898 + G 75 -5.9 -4.45068 | gap 1, overlap 4372886 ACGTGCCGATCTGGA CCGGGTGCTG CCCGA CCGC-CCCGG TTTGTTCTTCGCGAT TERM 1656 4373572 - 4373523 - g 71 -11.4 -3.57144 | CGCGGCAGGCGTAAA CGT-GCACGTCCACGCGTGCGGTG AGTG CACTGCGCGCGTGG-CGCTCGACG CCATCGAGCGCGCGG MSMEG_4289 4372372 - 4374180 + | amidohydrolase MSMEG_4288 4374631 - 4374158 - | integral membrane protein glnA 4374853 - 4376289 + | glutamine synthetase, type I TERM 1657 4376412 - 4376376 - f 100 -23.1 -2.63631 | opp_overlap 4376382, overlap 4376382 GTAAGTCGTAGAGCA CCAAAAGGCCGGGCGCA TTG CGCGCCCGGCCTTTTGC GTTGCGCCTGTTGCG TERM 1658 4376406 - 4376382 - f 100 -20.7 -4.33274 | opp_overlap 4376382, overlap 4376376 CGTAGAGCACCAAAA GGCCGGGCGCA TTG CGCGCCCGGCC TTTTGCGTTGCGCCT TERM 1659 4376382 - 4376406 + F 100 -20 -4.27584 | opp_overlap 4376376 4376382 CGTAGAGCACCAAAA GGCCGGGCGC ATTGC GCGCCCGGCC TTTTGCGTTGCGCCT dtd 4376518 - 4376949 + | D-tyrosyl-tRNA deacylase MSMEG_4292 4376977 - 4377387 + | integral membrane protein MSMEG_4293 4380491 - 4377492 - | glutamate-ammonia-ligase adenylyltransferase TERM 1660 4377875 - 4377921 + g 72 -13.5 -3.14344 | CCAGCTTGGTGTGGG TGTTCGGGTCGGCGCCGCGCG GCAGG CGCTCGGCGTCCACCCGCGCC TTGATGCGGCGGATC TERM 1661 4379738 - 4379700 - G 74 -13 -3.63515 | opp_overlap 4379709 4379723 GTCGACCTCGAAGAA CGCGTCGCCGGCGAACCG CAT CATCTCGCCCGCCACGCG CGTGGCGGTCGCGAG TERM 1662 4379742 - 4379772 + g 72 -6.1 -4.24948 | gap 2, overlap 4379723 4379742 GCCCGCCACGCGCGT GG-CGGTCGC-GAGA TTG TCGCTGCGGCCGTCC TTTTCGATGTCCTCA TERM 1663 4380530 - 4380494 - R 81 -16.5 -2.77523 | overlap 4380491 4380489 TTCGCACGAACACGA CGGTATCGCACCGGGCA CCA CGCCCGGCACGACCCCG ACCACGGAGGCTACA glnA 4381881 - 4380541 - | glutamine synthetase, type I TERM 1664 4381521 - 4381480 - G 74 -10.9 -3.75024 | gap 1, overlap 4381481 CTTGAGGAGGAAGAA CTCGATCTCGGGGTGCACGT AGC ACGTGAACCC-GAGATCGCT GGCCTTGGCCAGCTG MSMEG_4295 4383436 - 4381934 - | hydrolase, alpha/beta fold family protein MSMEG_4296 4385097 - 4383565 - | protease MSMEG_4297 4386526 - 4385129 - | acyltransferase, ws/dgat/mgat subfamily protein TERM 1665 4385344 - 4385333 - G 71 -2.2 -4.56597 | overlap 4385338 CTCGGCGCCCAAAAA GTAC AGCG GCAC CTGCGGGCCCGGCAC TERM 1666 4385980 - 4386034 + g 82 -17.8 -3.09516 | gap 2 CGTTGACCGCGATCT CCAGGCCGGTGCCGCCGCCCGGGCCG TCGAC CGGATCGGGCGGCGGCGC--GTCGGG TTCGGTGGTGCACAG panB 4386689 - 4387552 + | 3-methyl-2-oxobutanoate hydroxymethyltransferase TERM 1667 4387614 - 4387570 - T 93 -18.8 -3.30159 | opp_overlap 4387571 4387573 4387578, overlap 4387571 4387573 4387578 CGAAGCTTTCGAGAA CGACGAAATGGTCGCTGTCA CACGC TGACAGTGACCATTTCGTCT CTCTGGAGTTCGTCT TERM 1668 4387613 - 4387571 - T 100 -22.3 -2.57881 | opp_overlap 4387571 4387573 4387578, overlap 4387570 4387573 4387578 GAAGCTTTCGAGAAC GACGAAATGGTCGCTGTCA CACGC TGACAGTGACCATTTCGTC TCTCTGGAGTTCGTC TERM 1669 4387571 - 4387613 + T 100 -24.5 -2.92157 | opp_overlap 4387571 4387570 4387573 4387578, overlap 4387573 4387578 GAAGCTTTCGAGAAC GACGAAATGGTCGCTGTCA CACGC TGACAGTGACCATTTCGTC TCTCTGGAGTTCGTC TERM 1670 4387573 - 4387611 + T 100 -21.3 -3.00994 | opp_overlap 4387573 4387571 4387570 4387578, overlap 4387571 4387578 AGCTTTCGAGAACGA CGAAATGGTCGCTGTCA CACGC TGACAGTGACCATTTCG TCTCTCTGGAGTTCG TERM 1671 4387611 - 4387573 - T 93 -19.1 -2.82742 | opp_overlap 4387571 4387573 4387578, overlap 4387571 4387570 4387578 AGCTTTCGAGAACGA CGAAATGGTCGCTGTCA CACGC TGACAGTGACCATTTCG TCTCTCTGGAGTTCG TERM 1672 4387578 - 4387606 + T 88 -14 -3.91196 | opp_overlap 4387578 4387573 4387571 4387570, overlap 4387573 4387571 TCGAGAACGACGAAA TGGTCGCTGTCA CACGC TGACAGTGACCA TTTCGTCTCTCTGGA TERM 1673 4387606 - 4387578 - T 81 -11.8 -3.86944 | opp_overlap 4387573 4387571 4387578, overlap 4387573 4387571 4387570 TCGAGAACGACGAAA TGGTCGCTGTCA CACGC TGACAGTGACCA TTTCGTCTCTCTGGA MSMEG_4299 4388423 - 4387638 - | enoyl-CoA hydratase/isomerase MSMEG_4300 4389112 - 4388435 - | transcription regulator AmtR MSMEG_4301 4390904 - 4389120 - | acyl-CoA synthetase MSMEG_4302 4391109 - 4392635 + | adenylate cyclase, putative TERM 1674 4392791 - 4392812 + T 90 -15.9 -3.69338 | CTCGGGCGCCTGCGC GGCCGCAAC CGCA GTTGCGGCC TTCTTGGCCTTGCTT MSMEG_4303 4394689 - 4393133 - | methyltransferase TERM 1675 4394759 - 4394720 - H 71 -4.3 -4.49981 | gap 1, opp_overlap 4394709, overlap 4394712 4394721 4394722 4394749 4394752 GAGAGCATGACAAAA TGC-CAAGCTGTTTTGCC ATGAA GGCAAAACAGCAGGTGGA CGCGCCCGGTGCCGA MSMEG_4304 4394755 - 4395333 + | regulatory protein MSMEG_4305 4396432 - 4395335 - | bifunctional RNase H/acid phosphatase MSMEG_4306 4397157 - 4396429 - | hypothetical protein MSMEG_4307 4398298 - 4397147 - | hypothetical protein TERM 1676 4397244 - 4397232 - G 72 -3.4 -4.56775 | overlap 4397233 AGTGCGTCCGAAAAA TGCT TGCGC AGCA CGCCCGCGGCCTGGG TERM 1677 4398467 - 4398424 - H 81 -12.2 -3.92522 | overlap 4398425 GGCGAACTGCACAAA CGGCGCCCGCATGGGCGCGG TCGG CCACGCCGGTACGGCGGCCG CGCGGACGGCACGAG MSMEG_4308 4398573 - 4399265 + | 5'-nucleotidase MSMEG_4309 4399258 - 4399749 + | low molecular weight protein-tyrosine-phosphatase TERM 1678 4399753 - 4399763 + G 72 -8.2 -3.96148 | ATCGTGGCCTGATGC GCCG GCT CGGC TTTCTCCTGCGCCCG MSMEG_4311 4399749 - 4400582 + | hypothetical protein cobD 4401492 - 4400536 - | cobalamin biosynthesis protein TERM 1679 4400635 - 4400610 - G 70 -14.7 -2.73364 | gap 1 CCGCCACCGCAACCA GCGCGGCCGCGC CCT GCACGGC-GCGC GACAATCGCACCGCT MSMEG_4313 4401829 - 4402245 + | glyoxalase/bleomycin resistance protein/dioxygenase MSMEG_4314 4402310 - 4402825 + | hypothetical protein MSMEG_4315 4402920 - 4403411 + | RNA polymerase sigma factor, sigma-70 family protein MSMEG_4316 4403408 - 4403971 + | methylated-DNA--protein-cysteine methyltransferase MSMEG_4317 4403968 - 4404681 + | hypothetical protein MSMEG_4318 4404837 - 4405655 + | hypothetical protein MSMEG_4320 4406377 - 4405907 - | alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen MSMEG_4321 4406815 - 4406378 - | hypothetical protein TERM 1680 4406503 - 4406469 - G 81 -18.4 -2.78596 | opp_overlap 4406457 4406500 GAGGTCTGCATCAGA CCGGCCGTGGGCGCCG ATT CGGCGATCTCGGCCGG CAGCACGTGCCCTGG MSMEG_4322 4407487 - 4406957 - | hypothetical protein aceE 4407679 - 4410468 + | pyruvate dehydrogenase subunit E1 TERM 1681 4410484 - 4410509 + F 100 -20.5 -3.90112 | TCCGGCCACAGTGAG CAGCCACCGGC ACAC GCCGGTGGCTG TTTGCTTGCGGGCAC MSMEG_4324 4410564 - 4411850 + | hypothetical protein MSMEG_4325 4412068 - 4412940 + | malonyl CoA-acyl carrier protein transacylase TERM 1682 4412995 - 4412976 - f 70 -11.4 -3.34192 | AACGTCCGGAATGAA CCCCTCCA CAGC CGGAGGGG CATCAACAACAACGA acpP 4413021 - 4413320 + | acyl carrier protein MSMEG_4327 4413317 - 4414567 + | 3-oxoacyl-(acyl carrier protein) synthase II MSMEG_4328 4414597 - 4415850 + | 3-oxoacyl-(acyl carrier protein) synthase II MSMEG_4329 4415919 - 4417343 + | propionyl-CoA carboxylase beta chain TERM 1683 4417405 - 4417360 - T 100 -30.9 -3.04144 | opp_overlap 4417362 4417369 4417404, overlap 4417362 4417369 TTCTCAGCGCGAACA GACGCAAAACTGCTCCTTTTC ACGC GAAAAGGAGCAGTTTTGCGTC TGGTGGGCAGGCTTA TERM 1684 4417362 - 4417403 + T 100 -27.7 -2.78463 | opp_overlap 4417360 4417362 4417369, overlap 4417369 CTCAGCGCGAACAGA CGCAAAACTGCTCCTTTTC ACGC GAAAAGGAGCAGTTTTGCG TCTGGTGGGCAGGCT TERM 1685 4417403 - 4417362 - T 100 -27.7 -3.07895 | opp_overlap 4417362 4417369, overlap 4417360 4417369 CTCAGCGCGAACAGA CGCAAAACTGCTCCTTTTC ACGC GAAAAGGAGCAGTTTTGCG TCTGGTGGGCAGGCT TERM 1686 4417369 - 4417396 + T 100 -17.2 -4.24948 | opp_overlap 4417362 4417360 4417369, overlap 4417362 CGAACAGACGCAAAA CTGCTCCTTTTC ACGC GAAAAGGAGCAG TTTTGCGTCTGGTGG TERM 1687 4417396 - 4417369 - T 100 -17.2 -4.28375 | opp_overlap 4417369 4417362, overlap 4417362 4417360 CGAACAGACGCAAAA CTGCTCCTTTTC ACGC GAAAAGGAGCAG TTTTGCGTCTGGTGG MSMEG_4330 4418167 - 4417418 - | short chain dehydrogenase MSMEG_4331 4418265 - 4419254 + | putative transcriptional regulator MSMEG_4332 4421044 - 4419488 - | glycerol-3-phosphate dehydrogenase 1 MSMEG_4333 4421625 - 4421041 - | transcriptional regulator, TetR family protein TERM 1688 4423092 - 4423072 - g 75 -8.9 -4.19238 | GGCGCAAGGCGAAAA CCGCGGCCT CCG AGGCCATGG TGCGCAACGGCGCAA MSMEG_4334 4421676 - 4423253 + | flavoprotein MSMEG_4335 4423250 - 4424152 + | diacylglycerol kinase TERM 1689 4424196 - 4424170 - T 100 -15.9 -4.29738 | opp_overlap 4424170 CGAGAGCGACGAAAA CGTCGCCACAC CACGC GTGCGGCGACG TTTTCGTCGATCTCG TERM 1690 4424170 - 4424196 + T 100 -13.7 -4.29738 | opp_overlap 4424170 CGAGAGCGACGAAAA CGTCGCCACAC CACGC GTGCGGCGACG TTTTCGTCGATCTCG MSMEG_4336 4424732 - 4424220 - | hypothetical protein MSMEG_4337 4425665 - 4424856 - | beta-lactamase MSMEG_4338 4426827 - 4425730 - | transcriptional regulatory protein MSMEG_4339 4428589 - 4426949 - | TPR repeat-containing protein TERM 1691 4428151 - 4428129 - G 81 -12.6 -3.85817 | overlap 4428130 ACGCTGTCGCACAAA TGCCGCACCG CCT CGGCGCGGCG CGCCAACTCCTCAGG TERM 1692 4428150 - 4428130 - G 75 -16.1 -2.91276 | overlap 4428129 CGCTGTCGCACAAAT GCCGCACCG CCT CGGCGCGGC GCGCCAACTCCTCAG TERM 1693 4429122 - 4429089 - g 79 -14.7 -3.28712 | gap 1, overlap 4429119 CGCGTTCGCCGACAA GACCCTGGTGCAC-GA GGG CCAGTGCACCAAGGTC GACGCCGACGCCGAC MSMEG_4340 4428679 - 4429770 + | NAD/mycothiol-dependent formaldehyde dehydrogenase MSMEG_4342 4429796 - 4430428 + | metallo-beta-lactamase family protein MSMEG_4341 4430561 - 4430412 - | hypothetical protein TERM 1694 4430632 - 4430579 - H 86 -15.3 -3.54741 | gap 1 CACCACGCCGTGAAA TC-TCAGCAGTGCACGCGCCCTCGGC AGC GACGAGCGTGCGCGAACTGCTGACGA AAGGCGGCGTGTCGA TERM 1695 4430931 - 4430962 + G 78 -16.6 -3.08679 | gap 1, opp_overlap 4430922 4430924, overlap 4430933 CCAGAAGAGCCTGCG CGA-CGCCGTGCCCG CCA CGGGCACGGCGCTCA TATTCGGTGAGGCGC TERM 1696 4430933 - 4430959 + G 81 -19.4 -2.75992 | opp_overlap 4430922 4430924, overlap 4430931 AGAAGAGCCTGCGCG ACGCCGTGCCCG CCA CGGGCACGGCGC TCATATTCGGTGAGG MSMEG_4344 4430791 - 4432173 + | putative monooxygenase MSMEG_4343 4432934 - 4432170 - | hypothetical protein MSMEG_4345 4433287 - 4432931 - | hypothetical protein MSMEG_4346 4433006 - 4433236 + | hypothetical protein TERM 1697 4433312 - 4433294 - gR 82 -16 -3.12505 | overlap 4433292 ACCCCACACCGAAGA TGCGGGCG CCG CGCCCGCA CGCCGCGGGACTGAA MSMEG_4347 4433239 - 4434321 + | hypothetical protein MSMEG_4348 4435885 - 4434329 - | hypothetical protein MSMEG_4349 4437738 - 4435960 - | hypothetical protein dapB 4438963 - 4437803 - | dihydrodipicolinate reductase TERM 1698 4437946 - 4437920 - G 77 -17.2 -2.52464 | TCCGGTCGCAAGGCA CCCGGCCGCGGC GGC GTCGCGGCCGGA GCCGTCGGTGAAGCG MSMEG_4351 4438978 - 4439736 + | oxidoreductase YjgI TERM 1699 4439753 - 4439782 + T 71 -12.1 -3.20991 | gap 1, opp_overlap 4439742, overlap 4439738 CACAGCACGCTGGGC GGCGCGG-TGGCGG TGT CCTTCAGCCGCGCC TTGAATTGCATTGCG MSMEG_4352 4440798 - 4439737 - | putative secreted protein TERM 1700 4440289 - 4440236 - G 75 -10.5 -4.07568 | TGTTTGCGCTGAAAA CCGGTCGC-GG-CCACGTACACCCAAC CGTC GTCGGG-GT-CGTGGTCCCACGACCAG CACTGGGCGTGCCCG MSMEG_4353 4441354 - 4440809 - | hypothetical protein TERM 1701 4441375 - 4441394 + H 73 -13.6 -2.79915 | opp_overlap 4441358 GTGAGTATCGCAGCC CCGGTGAC GACC GTCACCGG TATGGTCGCCTACGT MSMEG_4354 4441468 - 4442991 + | dipeptide-binding protein of ABC transport system MSMEG_4355 4442988 - 4443965 + | peptide ABC transporter, permease protein TERM 1702 4444593 - 4444624 + G 72 -3.6 -4.59773 | gap 1, overlap 4444598 TGTCGTTGTCGCTGG CGTTCGCGAT-CCTC GCC GAGGCGTCGCTGTCG TTTTTGGGCCTGGGA MSMEG_4356 4443962 - 4444840 + | inner membrane ABC transporter permease protein YddQ TERM 1703 4446014 - 4446050 + G 85 -15.8 -3.60296 | CACGCGCCGAGCGGG TCGCCGAGCTGCTCGA ACTGG TCGGGCTGCCCGGCGA TTTCGCGTCCCGGTA MSMEG_4357 4444837 - 4446417 + | ABC transporter, ATP-binding protein MSMEG_4358 4446420 - 4447160 + | D-beta-hydroxybutyrate dehydrogenase MSMEG_4359 4447407 - 4447171 - | hypothetical protein MSMEG_4361 4447270 - 4447512 + | hypothetical protein MSMEG_4360 4448855 - 4447509 - | hypothetical protein TERM 1704 4447627 - 4447682 + g 93 -16.2 -3.86897 | opp_overlap 4447624 4447627 GGCGCATAGATACCA CCGGGGACGGCCGTGGAGCTG-ACGA TCGTCT TCGCGCGGCTCCACGGCCC-CTCCGG TTTGTCGGCCGTGCG TERM 1705 4447682 - 4447627 - G 74 -16.2 -2.72799 | opp_overlap 4447627, overlap 4447624 GGCGCATAGATACCA CCGGGGACGGCCGTGGAGCTG-ACGA TCGTCT TCGCGCGGCTCCACGGCC-CCTCCGG TTTGTCGGCCGTGCG MSMEG_4362 4449823 - 4449005 - | universal stress protein family protein MSMEG_4363 4450634 - 4450008 - | hypothetical protein MSMEG_4364 4450883 - 4450749 - | hypothetical protein TERM 1706 4450785 - 4450834 + gH 72 -12.8 -3.07935 | opp_overlap 4450787 TCGCGGCAATCGCAA AACCTTTGCCGTCGGCCTGCGA TACTTC TCGTCGGCCGACGACAAAGGGG TTGCGTGAATGGGAT TERM 1707 4450832 - 4450787 - GH 100 -19.8 -4.19238 | opp_overlap 4450785 GCGGCAATCGCAAAA CCTTTGCCGTCGGCCTGCGA TACTTC TCGTCGGCCGACGACAAAGG GGTTGCGTGAATGGG MSMEG_4365 4450873 - 4453014 + | hypothetical protein MSMEG_4366 4454593 - 4453016 - | serine/threonine-protein kinase PknD TERM 1708 4453787 - 4453814 + g 78 -17 -2.72344 | gap 1 CGCGCGCGCCAGTTC CCCGGCCGTGGCG TAG CGC-GCGGCCGGG TCCTTGGCCATCGCC MSMEG_4367 4455976 - 4454720 - | formamidase MSMEG_4368 4456285 - 4455998 - | putative regulatory protein, FmdB family protein MSMEG_4369 4455986 - 4456396 + | hypothetical protein TERM 1709 4456410 - 4456373 - TR 78 -4 -4.77567 | AGTTGGATAACAAAA CAGCCTCTACGGATCC TGTTGT AGCGCCGCACAGGCTG TACACGGGGTGGCGG MSMEG_4370 4457708 - 4456431 - | regulatory protein MSMEG_4371 4458716 - 4457769 - | vanillate O-demethylase oxidoreductase TERM 1710 4458684 - 4458710 + g 75 -9.5 -3.99678 | gap 1, opp_overlap 4458674, overlap 4458677 GATGACGCCCGCGGC CTCCAGG-CGCA GTTG TGTGACCTGGAG TTTCATTGTGCCGGT MSMEG_4372 4459807 - 4458713 - | capreomycidine hydroxylase MSMEG_4373 4460713 - 4459820 - | polysaccharide deacetylase, putative speB 4461672 - 4460713 - | agmatinase MSMEG_4375 4462337 - 4461684 - | 3-oxoacyl-[acyl carrier protein] reductase MSMEG_4376 4463046 - 4462339 - | 3-oxoacyl-[acyl-carrier-protein] reductase MSMEG_4377 4464521 - 4463043 - | amino acid permease family protein, putative MSMEG_4378 4464829 - 4465473 + | two-component system response regulator MSMEG_4379 4465578 - 4466222 + | isochorismatase hydrolase TERM 1711 4466274 - 4466301 + F 83 -17.2 -2.56095 | opp_overlap 4466281, overlap 4466270 4466281 CCGAGATTGCACTGA GGGACAAGAAAC CGGC GTTTCTTGTCCC TGGCTTCAATCTCGG MSMEG_4380 4466375 - 4468300 + | ABC transporter, permease/ATP-binding protein MSMEG_4381 4468358 - 4469371 + | amidase MSMEG_4382 4469384 - 4470145 + | dehydrogenase/reductase SDR family protein member 10 MSMEG_4383 4470276 - 4473152 + | MmpL5 protein TERM 1712 4474124 - 4474139 + G 71 -10.4 -3.79906 | overlap 4474127 GCAGGGCTGCATCGG TGCGCG CGAC CGCGCA TTCTTCTGCGAGTAC MSMEG_4384 4473309 - 4475720 + | penicillin binding protein transpeptidase domain-containing protein MSMEG_4385 4475954 - 4477612 + | ABC transporter oligopeptide binding protein TERM 1713 4477666 - 4477624 - g 79 -15.5 -3.29511 | gap 1, opp_overlap 4477633, overlap 4477625 GTGAGCCTGGCAGAA CCCGTCACCCGCCGCACCGC TTTC GGGGTGCGGCGGGTG-CTCG TCCGCATCGCGGGCG MSMEG_4386 4477609 - 4478577 + | ABC transporter permease protein MSMEG_4387 4478574 - 4479428 + | ABC transporter permease protein TERM 1714 4480037 - 4480021 - g 76 -2.1 -4.72272 | opp_overlap 4480021 4480024, overlap 4480024 GGCCGCGATGAAAAA CAAGGGC ACG GGCCTGG TGTTGATCAGCCACG MSMEG_4388 4479425 - 4481053 + | ABC transporter ATP-binding protein TERM 1715 4482080 - 4482107 + G 78 -12 -3.72576 | gap 1 CGTCGGTCGAGATGT TCGGGCAGGG-CC AGT GGACCCTGCGCGA TTTCATCGACGCCCA MSMEG_4389 4481050 - 4482420 + | monooxygenase, NtaA/SnaA/SoxA family protein MSMEG_4391 4482417 - 4483634 + | acyl-CoA dehydrogenase-family protein MSMEG_4390 4484047 - 4483625 - | hypothetical protein TERM 1716 4483674 - 4483725 + gF 90 -19 -2.74782 | gap 1 CTGTCGCACTGCCGA TT-TCTTGCGCGCGGATTGTGACCT GCA AGGTCACAATCCGTGCTCGAGATGA TCGTTGACCCTTTCT MSMEG_4392 4483869 - 4485146 + | organophopsphate acid anhydrase MSMEG_4393 4485158 - 4486039 + | carboxyvinyl-carboxyphosphonate phosphorylmutase MSMEG_4394 4486934 - 4486041 - | LysR family protein transcriptional regulatory protein TERM 1717 4487199 - 4487166 - g 77 -11.6 -3.84406 | gap 1 CCCCTATTACAAGAA CTGCGCCGCGGCCCG TGCGG CCGGC-GCGGCGCCG GTCTACGAGGGTGAC MSMEG_4395 4487077 - 4487268 + | Excalibur domain-containing protein MSMEG_4396 4488018 - 4487275 - | isochorismatase hydrolase MSMEG_4397 4488526 - 4488131 - | transcriptional regulator, MerR family protein TERM 1718 4488999 - 4489036 + G 70 -12 -3.28712 | gap 3, overlap 4489000 4489031 GTCCACCGACGAGTT CCGGGCCGCCGG--GGCGC GCC GCGCCGACCGG-GGCCCGC TTCTCGACGAGACGC TERM 1719 4489231 - 4489207 - g 95 -13.5 -4.25104 | opp_overlap 4489207, overlap 4489208 CGTTCCGCATCAAAA GCCATGCGGCG CAT CGCCGCACGGG CCGATGGCTGGTTGC TERM 1720 4489230 - 4489208 - g 85 -17 -3.14848 | opp_overlap 4489207, overlap 4489207 GTTCCGCATCAAAAG CCATGCGGCG CAT CGCCGCACGG GCCGATGGCTGGTTG TERM 1721 4489393 - 4489412 + G 78 -12.1 -3.73072 | opp_overlap 4489387 TTCACCGAACGCTCG GCCGGGC CGGATC GCCCGGC TTTCGTCGGAACATT MSMEG_4398 4488622 - 4489575 + | hypothetical protein MSMEG_4399 4489599 - 4489976 + | hypothetical protein MSMEG_4400 4491054 - 4489984 - | alcohol dehydrogenase, zinc-containing MSMEG_4401 4491788 - 4491063 - | phosphonoacetaldehyde hydrolase MSMEG_4402 4492467 - 4493168 + | IS1096, tnpR protein MSMEG_4403 4494498 - 4493176 - | IS1096, tnpA protein MSMEG_4404 4494217 - 4494771 + | hypothetical protein MSMEG_4405 4495622 - 4495047 - | putative ECF sigma factor RpoE1 TERM 1722 4495576 - 4495610 + g 73 -12 -3.4678 | overlap 4495578 CTCAGTTCCGTGTCA TTCGCTGCTGGCGCCG GTT CGGTGCCTGCAGTGTG TTGTGATGTCACCAT TERM 1723 4495578 - 4495608 + g 82 -16.8 -3.30651 | overlap 4495576 CAGTTCCGTGTCATT CGCTGCTGGCGCCG GTT CGGTGCCTGCAGTG TGTTGTGATGTCACC MSMEG_4406 4496029 - 4495727 - | UsfY protein MSMEG_4407 4496482 - 4496063 - | hypothetical protein MSMEG_4408 4497018 - 4496500 - | integral membrane protein MSMEG_4409 4497153 - 4497278 + | hypothetical protein MSMEG_4410 4497702 - 4497433 - | hypothetical protein MSMEG_4411 4498460 - 4497720 - | oxidoreductase FAD-binding region MSMEG_4412 4499063 - 4498464 - | oxidoreductase, molybdopterin binding MSMEG_4413 4499372 - 4499073 - | hypothetical protein TERM 1724 4499167 - 4499210 + g 71 -11.1 -3.56541 | gap 2, overlap 4499158 CCGGTCGGGTTGATG CCCTT--CTCCGTCGGTGCCG GTGG CGGTACCGACGGAGTCGAAGG TTGTGTGGTCGTGGT MSMEG_4414 4499895 - 4499356 - | hypothetical protein tal 4501004 - 4499892 - | transaldolase MSMEG_4416 4501126 - 4501001 - | hypothetical protein msrA 4501721 - 4501152 - | methionine sulfoxide reductase A msrB 4502212 - 4501718 - | methionine-R-sulfoxide reductase TERM 1725 4501973 - 4501996 + g 73 -16.8 -2.66435 | opp_overlap 4501959, overlap 4501970 ACTGCGGTCAGACTT CTCGACGACG TAGC CGTCGTCGAG TGGTCTGGTGAAACT MSMEG_4419 4503035 - 4502235 - | glucose-1-dehydrogenase MSMEG_4420 4503248 - 4503682 + | cupin 2, barrel TERM 1726 4504197 - 4504208 + G 72 -5.8 -4.25104 | TCGAGGCAGGCCGCG CAGC CCAG GCTG TTTTGGTCGAACACC MSMEG_4421 4503695 - 4504246 + | hypothetical protein TERM 1727 4504988 - 4505018 + G 76 -14.1 -3.53012 | gap 2, overlap 4504991 TGTCGGGGGTCGCCC GTC-CGGTG-CCGGC CGG GCCGGTCACCGTGAC TTTCAAGAACCGGAC MSMEG_4422 4504237 - 4505727 + | oxidoreductase MSMEG_4423 4505724 - 4506692 + | oxidoreductase MSMEG_4424 4506742 - 4507137 + | endoribonuclease L-PSP MSMEG_4425 4507134 - 4507535 + | putative oxidoreductase TERM 1728 4508657 - 4508703 + G 88 -15.1 -3.75332 | gap 1, opp_overlap 4508700 GTCCTCACCGTCACG CCGCTGACCTCGGT-GGCTCTG GCCT CGGTGCCGACCGAGCACAGCGG TTTGGCTTCCGCAGT MSMEG_4427 4507529 - 4508977 + | transmembrane efflux pump MSMEG_4426 4509754 - 4508963 - | secreted protein TERM 1729 4509111 - 4509137 + g 73 -15.9 -2.64616 | gap 1, opp_overlap 4509096 GCGCCGAAGTACGGC GCGTCCGGGTCG GTGA CGACCCGG-CGC TGATCTCCGTGGGCC MSMEG_4428 4510221 - 4509784 - | hypothetical protein MSMEG_4429 4510757 - 4510350 - | hypothetical protein MSMEG_4430 4513175 - 4510896 - | transcriptional regulator MSMEG_4431 4516585 - 4513754 - | putative regulatory protein TERM 1730 4515808 - 4515783 - G 72 -6.1 -4.34402 | gap 1, overlap 4515784 CGTGGCAGAGCAAAA CCCGA-GGCCAC CGC ACGGCCATCGGA GAGGCCGAGCCGTCC MSMEG_4432 4516756 - 4516598 - | hypothetical protein MSMEG_4433 4516806 - 4518224 + | dehydrogenase MSMEG_4434 4518221 - 4519033 + | Cof protein MSMEG_4435 4519702 - 4519067 - | dimethylmenaquinone methyltransferase MSMEG_4436 4521636 - 4519702 - | transketolase ctaD 4523380 - 4521629 - | cytochrome c oxidase, subunit I TERM 1731 4523400 - 4523417 + r 71 -12.7 -3.02511 | CCGGTTCTCTCCTGT CCGTCGC ACGT GCGACGG TCTTCCACCCGTCGC MSMEG_4438 4523499 - 4523377 - | hypothetical protein MSMEG_4439 4524148 - 4523543 - | acetyltransferase MSMEG_4440 4524924 - 4524154 - | glucose-1-dehydrogenase MSMEG_4441 4525862 - 4524954 - | cupin domain-containing protein TERM 1732 4525188 - 4525228 + gH 71 -12.4 -3.21395 | overlap 4525187 TCGCATCGGTATGAC CCGCATGGGGTGGCGAGG TGGAT CCGCGCCGTCACCTGCGG TGTTCTGCGGAGCAT MSMEG_4442 4526812 - 4525892 - | zinc-binding oxidoreductase MSMEG_4444 4525862 - 4526827 + | hypothetical protein MSMEG_4443 4527093 - 4526809 - | hypothetical protein MSMEG_4445 4527378 - 4527220 - | hypothetical protein TERM 1733 4527575 - 4527593 + H 71 -10.2 -3.68244 | opp_overlap 4527559, overlap 4527576 GGTCCCGCACGGTCG CCGCGGAC CGG GTGCGCGG TTTGCGATTCCTCAT MSMEG_4447 4528883 - 4529092 + | hypothetical protein MSMEG_4448 4529095 - 4529424 + | transcriptional modulator of MazE MSMEG_4449 4530054 - 4529467 - | putative transcriptional regulator TERM 1734 4530312 - 4530334 + G 74 -14.8 -3.05844 | CGCCGCACGATTCGC CCAGGCCGGC TAC GCCGCCCTGG TGTTCGACTACCGGC TERM 1735 4530971 - 4530932 - g 78 -6.4 -4.64657 | gap 1, overlap 4530922 CGAAAGCCCGAAAAA TCGT-GGCCCGCATCCC GAACGGA GAGGTGCGGTCCTACGA CATCACGCATTTCGA MSMEG_4450 4530136 - 4531071 + | alpha/beta hydrolase MSMEG_4451 4531068 - 4532780 + | monooxygenase MSMEG_4453 4533018 - 4533377 + | hypothetical protein ltaE 4533404 - 4534420 + | L-threonine aldolase, low-specificity TERM 1736 4534428 - 4534455 + F 85 -17 -3.00525 | overlap 4534423 AGTTATGAGGACGGC TCCCTGGCGTCG AGTG CGACGCCAGGGC TGTGATTTCGGGGCC MSMEG_4455 4534603 - 4535847 + | beta-lactamase MSMEG_4456 4536666 - 4535851 - | hypothetical protein MSMEG_4457 4537615 - 4536707 - | regulatory protein, AsnC/Lrp MSMEG_4458 4537835 - 4539388 + | transmembrane transport protein speB 4539385 - 4540344 + | agmatinase MSMEG_4460 4540344 - 4541966 + | acetolactate synthase TERM 1737 4542010 - 4542032 + G 73 -9.8 -3.85698 | ATCGTCGCCGTCTAC CTGATCGCCA TGC TGGCGTTCGG TTTCTGGGGCAAGAC TERM 1738 4542406 - 4542427 + G 78 -12.3 -3.69323 | ACGGTGTTCAACGTC CTGTTCGGC ACGG GCCGAACGG TTTCCGTGCTCATCG MSMEG_4462 4541971 - 4543458 + | sodium:solute symporter MSMEG_4461 4544110 - 4543424 - | hypothetical protein MSMEG_4463 4545503 - 4544142 - | CalR5 protein MSMEG_4464 4547017 - 4545500 - | modulator of DNA gyrase MSMEG_4465 4547860 - 4547090 - | cutinase TERM 1739 4548377 - 4548389 + G 75 -4.7 -4.57073 | overlap 4548364 4548378 GCTGGCGCGCGGCCT GCCGG GCA CCGGG TTTTTCCGCACGGTC MSMEG_4466 4548039 - 4548956 + | ABC transporter, permease protein UspA MSMEG_4467 4548976 - 4549770 + | ABC transporter, permease protein UspE TERM 1740 4550105 - 4550134 + G 74 -13.5 -3.39327 | overlap 4550108 GACAGCCTGCGCACC GACGTCGCCGGCG GCAG CGCCGACGACATC TTCTGGATCTCCAAC TERM 1741 4550355 - 4550339 - g 83 -9.3 -4.57073 | overlap 4550341 GACCTGCTGGAAAAA GCCGGGG TGT CCCCCGC CGACCTCTCGACGCT TERM 1742 4550987 - 4551030 + G 76 -14.4 -3.53343 | gap 1 GTCAGCCCGTTCTTC CGGGTGCTGCAGGGC-CCGCG GAT CGCCGCGCCCGGCGGCGCCGG TTTCCCGGCCGGATT MSMEG_4468 4549859 - 4551151 + | extracellular solute-binding protein UspC MSMEG_4469 4552001 - 4551156 - | cobalt transport protein MSMEG_4470 4554037 - 4551998 - | ABC transporter TERM 1743 4552216 - 4552158 - G 81 -18.8 -2.78073 | overlap 4552157 AGCAGCCGCAACAAC CCGCGCGCGCT-GGCCGCGTCGAGGCCG GCAAG CGGC-TCGTCGAGGATGAGCGCGCGCGG TGAGCGGGCCAGCAG TERM 1744 4554326 - 4554300 - g 72 -13.7 -3.22476 | ACCATCGAGGATCAA GGCGAAGCCCG CATAT CGGACCTCGCC CTGCTCGATCACTGT MSMEG_4471 4554168 - 4554617 + | MarR-family protein transcriptional regulator MSMEG_4472 4554636 - 4555844 + | multidrug-efflux transporter protein MSMEG_4473 4556590 - 4555859 - | integral membrane protein MSMEG_4474 4556672 - 4558594 + | acyl-CoA oxidase TERM 1745 4558648 - 4558615 - T 85 -16.8 -3.06183 | gap 1, overlap 4558634 CTCACGGGGACGGAA GGGGATCGACGGCCA CCAAC CGGCCGTCG-TCCCC GATCCGGAACCGCAC MSMEG_4475 4559080 - 4558601 - | LppP protein TERM 1746 4559221 - 4559194 - H 91 -16.3 -3.68827 | CAGTCATGATCGAAA GTGGCGCCGCC GATGAG GGCGACGCCAC CTGACCGAGGAGACA MSMEG_4476 4559240 - 4559560 + | hypothetical protein MSMEG_4477 4561130 - 4559577 - | hydrolase, alpha/beta hydrolase fold family protein TERM 1747 4561666 - 4561634 - g 86 -13.4 -3.92869 | opp_overlap 4561622 CCATCGACGCAGAAA CGTCGGTGCTCTCC GTGGA GGATCGCACCGACG CTTCGGCGAAGTCCA MSMEG_4479 4561426 - 4561695 + | hypothetical protein MSMEG_4480 4561908 - 4561717 - | hypothetical protein MSMEG_4481 4561918 - 4562061 + | hypothetical protein dnaG 4564031 - 4562121 - | DNA primase TERM 1748 4563490 - 4563506 + g 70 -4.3 -4.43859 | overlap 4563492 TCCTTGAACTCGAAC CCCTTGC GCA GCAGGTG TTTTGTGAGCTTGTC MSMEG_4483 4565371 - 4564085 - | deoxyguanosinetriphosphate triphosphohydrolase-like protein MSMEG_4484 4565431 - 4567473 + | putative transmembrane protein glyS 4569064 - 4567679 - | glycyl-tRNA synthetase TERM 1749 4568720 - 4568734 + g 81 -10 -4.31433 | CATCGGCACCGAGTC GGGATC GTC GATCCC TTTCTTCTCGGCGTA MSMEG_4486 4569200 - 4569544 + | transcriptional regulator, ArsR family protein MSMEG_4487 4569541 - 4569951 + | ferric uptake regulation protein MSMEG_4488 4570369 - 4569965 - | hydrolase, nudix family protein TERM 1750 4570381 - 4570400 + r 75 -12.1 -3.53444 | TCACGACGTGAGGTC CCGGCGC ACGTCG GCGCCGG TTTCCAGCACCATGA MSMEG_4489 4570830 - 4570366 - | hypothetical protein uppS 4571716 - 4570835 - | undecaprenyl diphosphate synthase recO 4572506 - 4571664 - | DNA repair protein RecO TERM 1751 4573168 - 4573158 - g 78 -8.2 -4.36914 | CTGGTGGGCATAAAA CCGC AGC GCGG GCGCATCTCGACGTG MSMEG_4492 4572567 - 4574156 + | amidase era 4575093 - 4574188 - | GTP-binding protein Era MSMEG_4494 4575417 - 4575100 - | hypothetical protein MSMEG_4495 4576780 - 4575410 - | CBS domain-containing protein TERM 1752 4576253 - 4576279 + g 80 -16.6 -3.12351 | CACCACGCCGCGCTG CTGCGCGAGGTC CAC GACCTCACGCAG TTCGATCTCGGACGC MSMEG_4496 4577313 - 4576777 - | putative metalloprotease MSMEG_4497 4578356 - 4577310 - | PhoH family protein MSMEG_4498 4578360 - 4578452 + | hypothetical protein TERM 1753 4578467 - 4578504 + TF 89 -18.6 -3.16971 | gap 2 ATTACGTCGGCCATA C-GC-CGAGAGGCACCCC ATCG GGGGTGCCTCTCGCGCAG TTCAGTCTGTGGTCA MSMEG_4499 4578684 - 4578517 - | hypothetical protein MSMEG_4500 4578490 - 4578738 + | hypothetical protein MSMEG_4501 4580165 - 4578798 - | sodium:dicarboxylate symporter MSMEG_4503 4580149 - 4580292 + | hypothetical protein MSMEG_4502 4581029 - 4580289 - | hypothetical protein dnaJ 4582194 - 4581049 - | chaperone protein DnaJ hrcA 4583290 - 4582259 - | heat-inducible transcription repressor MSMEG_4506 4583459 - 4583328 - | hypothetical protein MSMEG_4507 4583484 - 4583798 + | hypothetical protein MSMEG_4508 4584014 - 4583805 - | hypothetical protein MSMEG_4509 4585299 - 4583992 - | MbtG protein TERM 1754 4584823 - 4584847 + g 73 -12.9 -3.44051 | GGCGGCCACGGTGTC CTCGTGGGTGT GCA ACGTCCACGAG TTCTGGTCATCCCCG MSMEG_4510 4589759 - 4585320 - | peptide synthetase mbtf MSMEG_4511 4595215 - 4589756 - | linear gramicidin synthetase subunit B MSMEG_4512 4598201 - 4595208 - | polyketide synthetase mbtd TERM 1755 4595578 - 4595555 - G 79 -3 -4.82901 | gap 1, overlap 4595557 CGGTGCCGAGAAAAA GTG-CGAGGCG CTG CGCGTCGGCGC TGAACACCAGCGGGT TERM 1756 4597134 - 4597100 - G 77 -14.9 -3.14229 | gap 1, opp_overlap 4597133, overlap 4597098 AGAGTTCGACGAAGA TGCGGGCGC-CGCGCC GGGC GGCGCGTGCGACCGCC TGATCGAACCGCACG TERM 1757 4597932 - 4597896 - G 74 -14.4 -3.36273 | opp_overlap 4597899, overlap 4597897 GCCGGGGAACACGAA CGCGACGCGGC-GCCGCG AAC CG-GGCTGCGGCGCCGCG GCTCTCGTCACCAGC TERM 1758 4597936 - 4597897 - G 77 -17.8 -2.6155 | gap 1, opp_overlap 4597899, overlap 4597896 CCGGGGAACACGAAC GCGACGCGGCGCCGCGAAC CGG GCT-GCGGCGCCGCGGCTC TCGTCACCAGCGGAT TERM 1759 4597899 - 4597934 + g 74 -16.8 -2.78384 | gap 1, opp_overlap 4597896 4597897 GGGGAACACGAACGC GACGCGGCGCCGCGAAC CGG GCT-GCGGCGCCGCGGC TCTCGTCACCAGCGG MSMEG_4513 4599499 - 4598198 - | polyketide synthase TERM 1760 4599191 - 4599211 + g 72 -13.9 -3.15663 | CTCCAGCGCCCGCCA CGCGACGCG CAA CGCGACGCG TTGCTGCGGATCCAT MSMEG_4514 4600232 - 4599486 - | thioesterase domain-containing protein TERM 1761 4600133 - 4600176 + g 82 -10.8 -4.14739 | opp_overlap 4600154 GGTACGCCAGGGCCG CACCGCCGGCGTGCGGGAAC ACCA GTGTGGGCCCGCTGGCGGTG TTTTCGGCTGGATAC MSMEG_4515 4603738 - 4600229 - | putative non-ribosomal peptide synthetase TERM 1762 4602102 - 4602069 - G 75 -9.3 -4.15044 | GCCTGCTCGAAGAAA CCGTCGTGCAGTGCG CGTC CGCTCGGCGCGGCGG ACCTCGCGTTCACCG MSMEG_4516 4603836 - 4605512 + | 2,3-dihydroxybenzoate-AMP ligase MSMEG_4517 4606146 - 4605520 - | TetR-type transcriptional regulator of sulfur metabolism TERM 1763 4606171 - 4606141 - G 73 -7 -4.19506 | gap 1, opp_overlap 4606149, overlap 4606142 AGGGTAACCCGAAAA CGGCAATAGACAG CCCTGT CTGTCTAT-GCCA CCGTGATGTCGTACC MSMEG_4518 4606212 - 4606742 + | hypothetical protein MSMEG_4519 4606739 - 4607761 + | NrtC protein MSMEG_4520 4607737 - 4608453 + | sulfate/thiosulfate import ATP-binding protein CysA MSMEG_4521 4608450 - 4609616 + | Tat (twin-arginine translocation) pathway signal sequence MSMEG_4523 4609613 - 4610410 + | binding-protein-dependent transport systems inner membrane component MSMEG_4522 4611492 - 4610407 - | ISMsm2, transposase MSMEG_4524 4612887 - 4611535 - | salicylate synthase MbtI MSMEG_4525 4614107 - 4612935 - | coproporphyrinogen III oxidase MSMEG_4526 4614474 - 4614343 - | hypothetical protein MSMEG_4527 4614429 - 4616138 + | ferredoxin sulfite reductase MSMEG_4528 4616144 - 4616854 + | phosphoadenosine phosphosulfate reductase MSMEG_4529 4616851 - 4617564 + | secreted protein cysA 4618668 - 4617583 - | sulfate ABC transporter, ATP-binding protein cysW 4619508 - 4618684 - | sulfate ABC transporter, permease protein CysW cysT 4620362 - 4619505 - | sulfate ABC transporter, permease protein CysT MSMEG_4533 4621408 - 4620359 - | sulfate-binding protein MSMEG_4534 4621951 - 4621748 - | hypothetical protein MSMEG_4535 4622057 - 4624063 + | glycoside hydrolase MSMEG_4536 4625287 - 4624067 - | hypothetical protein MSMEG_4537 4625673 - 4626596 + | major membrane protein I MSMEG_4538 4626583 - 4628262 + | cysteine desulphurase, SufS MSMEG_4539 4628345 - 4629451 + | alkanesulfonate monooxygenase TERM 1764 4629997 - 4629981 - g 88 -15.1 -3.78034 | GATCTACACCAACAA CCGGCCG ACG CGGCCGG GGTCGATCGACCGTC MSMEG_4540 4629448 - 4630668 + | hypothetical protein MSMEG_4541 4630773 - 4632392 + | ABC transporter, ATP-binding protein TERM 1765 4632904 - 4632925 + G 76 -7.3 -4.25256 | overlap 4632901 GGTCGACCCGATCTT CGTGGTGAT CGGC ATCATCGCG TTGTTTTCGTGGACG MSMEG_4542 4632389 - 4633327 + | oligopeptide transport integral membrane protein MSMEG_4543 4633332 - 4634315 + | ABC transporter system integral membrane protein MSMEG_4545 4634344 - 4636113 + | extracellular solute-binding protein, family protein 5 MSMEG_4544 4636661 - 4636110 - | methyltransferase small subunit MSMEG_4547 4638872 - 4637637 - | acyl-CoA dehydrogenase family protein MSMEG_4548 4639852 - 4638869 - | acetyltransferase, gnat family protein MSMEG_4549 4641354 - 4639849 - | amino acid permease-associated region, putative TERM 1766 4642612 - 4642564 - g 70 -8.3 -3.91144 | gap 3 TCGAGACTCCAGAAA GCGCA-CCGGACGACTGCA-CACC CCCA AGCGCTACAGTCG-CCGACTGCGC CGAGTCATGTACATG MSMEG_4550 4641611 - 4642816 + | transposase MSMEG_4551 4644329 - 4642947 - | monoxygenase ssuD 4645630 - 4644326 - | nitrilotriacetate monooxygenase component A TERM 1767 4645340 - 4645309 - G 73 -12.9 -3.524 | GATCGAGCGAGAGAA GCTGGCGCGCCAG GTGATA CGGGTGCGCCAGC GTCGCCGATCCCGTC MSMEG_4553 4645741 - 4646238 + | GAF domain-containing protein MSMEG_4554 4646960 - 4646256 - | serine/threonine-protein kinase PknH, putative TERM 1768 4646969 - 4646985 + r 71 -7.9 -4.14243 | GTGTCATGATTCATT GTCGCTC GCC GCGCGAC TTTTCAGGTCAGATC MSMEG_4555 4647762 - 4646989 - | LppR protein TERM 1769 4647636 - 4647675 + g 74 -15.6 -3.05596 | gap 1, opp_overlap 4647624 ACACGCGTGCGATGT CCGCGCCGCGCAGCGGCCG TGG CGGCAGATCCGCGGC-CGG TTGCATCGACCCGTC lepA 4649756 - 4647861 - | GTP-binding protein LepA MSMEG_4558 4649836 - 4650471 + | hypothetical protein MSMEG_4557 4651241 - 4650468 - | ABC transporter, ATP-binding protein MSMEG_4559 4652257 - 4651238 - | ABC transporter, membrane spanning protein MSMEG_4560 4653279 - 4652260 - | periplasmic binding protein MSMEG_4561 4654298 - 4653276 - | ABC Fe3+-siderophores transporter, periplasmic binding protein MSMEG_4563 4655399 - 4654776 - | puromycin N-acetyltransferase MSMEG_4564 4655898 - 4655467 - | CBS domain-containing protein TERM 1770 4656959 - 4656943 - g 73 -12.3 -3.40403 | CCGGGTGCAGGAGAA CGTCGAG TCC CTCGACG TGACGCTCACCCCTG MSMEG_4565 4656041 - 4657063 + | oxidoreductase MSMEG_4568 4658741 - 4659601 + | ribonuclease Z MSMEG_4567 4660424 - 4659585 - | hypothetical protein MSMEG_4569 4661402 - 4660425 - | hypothetical protein TERM 1771 4661048 - 4661064 + g 76 -13.7 -3.39482 | opp_overlap 4661016 GTTTCGCGGCCCGCT CGCGCTC GGC GAGCGCG TTGTAGGTGGTGTTG MSMEG_4570 4663040 - 4661412 - | hypothetical protein rpsT 4663326 - 4663586 + | 30S ribosomal protein S20 TERM 1772 4663626 - 4663602 - T 100 -21.5 -3.14564 | opp_overlap 4663602 4663619, overlap 4663580 TCAGTCTCTGATCAA CCCACCGCTCG TCG CGAGCGGTGGG TTTTTCTGACCCTCC TERM 1773 4663602 - 4663626 + T 100 -21.5 -4.84359 | opp_overlap 4663580 4663602, overlap 4663619 TCAGTCTCTGATCAA CCCACCGCTCG TCG CGAGCGGTGGG TTTTTCTGACCCTCC MSMEG_4572 4664614 - 4663655 - | hypothetical protein MSMEG_4573 4666136 - 4664622 - | competence protein MSMEG_4574 4667011 - 4666133 - | DNA-binding protein MSMEG_4575 4668343 - 4667078 - | hypothetical protein MSMEG_4576 4669255 - 4668449 - | SpfH domain-containing protein MSMEG_4577 4670201 - 4669359 - | DegV family protein MSMEG_4578 4670961 - 4670203 - | hypothetical protein MSMEG_4579 4671631 - 4670951 - | phosphoglycerate mutase family protein MSMEG_4580 4672043 - 4671642 - | hypothetical protein nadD 4672708 - 4672040 - | nicotinate (nicotinamide) nucleotide adenylyltransferase MSMEG_4582 4674224 - 4672767 - | hypothetical protein TERM 1774 4673288 - 4673304 + g 71 -11.5 -3.61398 | opp_overlap 4673276 GCACGGCCAGCTCGG GCCGCGC CGG GTGCGGC TTCTTGAGCACGACG MSMEG_4583 4675133 - 4674237 - | ATPase associated with various cellular activities proA 4676447 - 4675173 - | gamma-glutamyl phosphate reductase rbsK 4676563 - 4677423 + | ribokinase MSMEG_4586 4678480 - 4677428 - | ABC nitrate/sulfonate/bicarbonate family protein transporter, periplasmic ligand binding protein MSMEG_4587 4679235 - 4678486 - | putative aliphatic sulfonates transport ATP-binding protein SsuB MSMEG_4588 4680112 - 4679222 - | ABC nitrate/sulfonate/bicarbonate family protein transporter, inner membrane subunit MSMEG_4589 4681665 - 4680109 - | fused rhodanese domain-containing protein/cystathionine beta-lyase TERM 1775 4681247 - 4681301 + g 74 -16.5 -2.81312 | opp_overlap 4681236 AACACGACGTCCTCA CCTGCCGCGCGCC-ACGCGTCGACGGT CTC GCCGTCGACG-GTCGGGGTGCCGTAGG TGTGCTCGATCCATT ssuD 4683116 - 4681779 - | nitrilotriacetate monooxygenase component A MSMEG_4591 4683253 - 4683113 - | hypothetical protein TERM 1776 4683606 - 4683633 + G 70 -15.6 -2.78384 | overlap 4683586 GCGATCTGCGCGCCC GCGTCTTCGGCC GCGT GGCCGAAGGTGC TGTGCTCGGCAACGC MSMEG_4592 4683272 - 4684516 + | acyl-CoA dehydrogenase family protein MSMEG_4593 4684539 - 4685030 + | acyl-CoA dehydrogenase MSMEG_4594 4685778 - 4685629 - | hypothetical protein MSMEG_4595 4685185 - 4685997 + | serine/threonine-protein kinase PknH, putative MSMEG_4596 4686360 - 4687001 + | hypothetical protein lppH 4687713 - 4687021 - | putative lipoprotein lpph lppH 4688420 - 4687710 - | putative lipoprotein lpph MSMEG_4599 4689808 - 4688858 - | hypothetical protein TERM 1777 4688985 - 4688964 - G 72 -3.6 -4.63486 | overlap 4688965 4688967 AGGGCTTTAACAAAA CCACGGCG GTACTG CGCCGCAA GCGTGATAATATTTT MSMEG_4600 4690129 - 4690242 + | hypothetical protein MSMEG_4602 4690236 - 4690391 + | hypothetical protein MSMEG_4601 4691154 - 4690381 - | transcriptional regulator, AraC family protein MSMEG_4604 4692264 - 4692127 - | hypothetical protein TERM 1778 4692825 - 4692867 + r 75 -7.1 -4.37157 | CCCATCTCAAGCAGT CCTGGCGA-TGACCTGGTGCA CGG TG-ACTTGGTCACTTGCCGGG TTTCTTGTGGTGCTT MSMEG_4606 4693741 - 4692803 - | hypothetical protein MSMEG_4607 4693002 - 4692856 - | hypothetical protein TERM 1779 4693081 - 4693099 + gr 86 -12.4 -4.13767 | opp_overlap 4693081 GGACCTTTGGTGAAA CCCCCGGT TTC ACTGGGGG TTTTGCGGTGCCGGC MSMEG_4608 4693281 - 4693090 - | hypothetical protein TERM 1780 4694255 - 4694242 - R 82 -3.9 -5.0538 | CTGCATCCGAAAAAA TTCAT CTTC ATGAA CACCGACACCACCGT MSMEG_4609 4695215 - 4694274 - | transcriptional regulator LysR family protein MSMEG_4610 4695322 - 4696107 + | IgiC, putative MSMEG_4611 4696122 - 4697426 + | carrier protein MSMEG_4613 4698167 - 4698006 - | hypothetical protein MSMEG_4614 4698959 - 4698213 - | GAF family protein TERM 1781 4699201 - 4699223 + r 78 -13.4 -3.50853 | GGACACATTGCCGTG CGGAGCGGTT CGG AACCGCACCG TTATGGTTGCAGCGG nadE 4703016 - 4700974 - | NAD synthetase MSMEG_4618 4703074 - 4703613 + | isochorismatase family protein MSMEG_4620 4703663 - 4704511 + | NAD-dependent deacetylase 1 MSMEG_4619 4705739 - 4704480 - | putative cytochrome P450 126 MSMEG_4622 4705806 - 4706447 + | transcriptional regulator, TetR family protein proB 4707556 - 4706444 - | gamma-glutamyl kinase obgE 4709010 - 4707553 - | GTPase ObgE rpmA 4709368 - 4709102 - | 50S ribosomal protein L27 rplU 4709696 - 4709385 - | 50S ribosomal protein L21 MSMEG_4626 4713000 - 4709887 - | ribonuclease, Rne/Rng family protein TERM 1782 4712574 - 4712603 + g 74 -12.8 -3.5764 | overlap 4712557 CGCGGAACGTGGGCT CCGGGGTCTCGG CTTCGT CCGCGACCTCGG TTTCGGCCTCGGCTT TERM 1783 4713309 - 4713346 + r 100 -28.5 -3.55761 | opp_overlap 4713309, overlap 4713332 ATCGAGACCGAAAAA CGGCCCCGGAGGCGGTC CGCT GACCGGCTCCGGGGCCG TTTCGGAAGTGGATC TERM 1784 4713346 - 4713309 - R 100 -28.5 -4.71061 | opp_overlap 4713309 4713332 ATCGAGACCGAAAAA CGGCCCCGGAGGCGGTC CGCT GACCGGCTCCGGGGCCG TTTCGGAAGTGGATC ndk 4713817 - 4713398 - | nucleoside diphosphate kinase MSMEG_4628 4714307 - 4713903 - | hypothetical protein valS 4718369 - 4715751 - | valyl-tRNA synthetase TERM 1785 4718445 - 4718408 - R 71 -10.6 -3.68351 | overlap 4718386 4718409 GGCCGATGAGCGAAA GCCCCC-GTCGCCCGAGC GTTC GCT-GGGTAACAGGGGGC TTCCGAGATGACGCG MSMEG_4631 4719089 - 4718475 - | hypothetical protein TERM 1786 4718756 - 4718799 + g 79 -15.3 -3.32647 | gap 2 GCTTCTTGATCAGGT CGCCGTTG-C-CCGCGCCGGT TCCA GCCAGCGCGGAGGCGACGGCG TTGCTGTCGTTGCCG MSMEG_4632 4720460 - 4719210 - | saccharopine dehydrogenase MSMEG_4633 4722462 - 4720471 - | peptidase S9, prolyl oligopeptidase MSMEG_4634 4722637 - 4722488 - | hypothetical protein TERM 1787 4722602 - 4722614 + gH 83 -4.7 -4.83615 | CCCTTTCAACTCCTT CCCCC TGC GGAGG TTTTTGTGCCACCTG MSMEG_4635 4722620 - 4723969 + | ammonium transporter family protein MSMEG_4636 4723973 - 4724191 + | hypothetical protein TERM 1788 4724268 - 4724226 - T 100 -24.3 -3.20583 | gap 1, opp_overlap 4724235, overlap 4724216 4724219 4724235 GAACACAACCGAATA CGACGAGAAGCGCCCCGGCC ATTC GGCCGGGGCGCTTTTC-TCG GTGATCTCTAGTGGC TERM 1789 4724235 - 4724260 + T 100 -23.3 -4.44245 | opp_overlap 4724216 4724226 4724219 4724235 CGAATACGACGAGAA GCGCCCCGGCC ATTC GGCCGGGGCGC TTTTCTCGGTGATCT TERM 1790 4724260 - 4724235 - T 100 -23.3 -3.47307 | opp_overlap 4724235, overlap 4724216 4724226 4724219 CGAATACGACGAGAA GCGCCCCGGCC ATTC GGCCGGGGCGC TTTTCTCGGTGATCT MSMEG_4637 4725268 - 4724276 - | hypothetical protein MSMEG_4638 4726206 - 4725265 - | vanillate O-demethylase oxidoreductase TERM 1791 4725293 - 4725334 + g 73 -12.9 -3.44527 | gap 1, overlap 4725295 TCCAATCGTTCTCCG GC-GGCGCGGGATACGCACG CCA TGAGCGCATCCCCCGCCTGC TTCTCGTCGTCGCTG MSMEG_4639 4726733 - 4726203 - | hypothetical protein MSMEG_4641 4726899 - 4728047 + | salicylate hydroxylase MSMEG_4640 4728505 - 4728044 - | secreted protein TERM 1792 4728739 - 4728702 - gR 100 -19.3 -3.83026 | gap 1, opp_overlap 4728707 4728708, overlap 4728708 GGCCTGGAGAGGAAA CAGAAAC-GGTGCCGGGC AAT GCCCGACACCCGCTTCTG ACCTGCTCGAAAGCA TERM 1793 4728732 - 4728708 - gR 95 -13.5 -4.3851 | opp_overlap 4728708 4728707, overlap 4728702 GAGAGGAAACAGAAA CGGTGCCGGGC AAT GCCCGACACCC GCTTCTGACCTGCTC MSMEG_4642 4728360 - 4728740 + | hypothetical protein MSMEG_4643 4729085 - 4728762 - | resuscitation-promoting factor TERM 1794 4729894 - 4729872 - R 77 -9 -4.20516 | opp_overlap 4729872, overlap 4729868 TGCCGATGCAACAAA CCCCGTGGTC AGC GACCGCGTGG TTAGTTAGGCGGGCT TERM 1795 4729872 - 4729894 + r 70 -11.2 -3.33815 | opp_overlap 4729868 4729872 TGCCGATGCAACAAA CCCCGTGGTC AGC GACCGCGTGG TTAGTTAGGCGGGCT TERM 1796 4730076 - 4730060 - R 75 -6.5 -4.37092 | opp_overlap 4730060 4730061, overlap 4730061 4730062 ACGGCCCGGATAAAA CCGCCGA ATA TCGGCAA TTTATCTCGAAACGA MSMEG_4644 4730716 - 4730153 - | molybdopterin-guanine dinucleotide biosynthesis protein A TERM 1797 4730713 - 4730667 - G 82 -20 -2.62184 | opp_overlap 4730662 TCCCGCCCCATACGA CGCGAAGCCCCGCCCGCCAGCA CTA CGGCGGCGAGCGGGGCTGCGCT CAAATCGTCTCGGTC orB 4731764 - 4730736 - | 2-oxoglutarate ferredoxin oxidoreductase subunit beta MSMEG_4646 4733770 - 4731815 - | pyruvate synthase TERM 1798 4732117 - 4732142 + g 77 -14.7 -3.18681 | opp_overlap 4732113 4732110 CCGGGAAAGGATTGA GGTGGCGCAGG TGCG CCTGGGCCACC TTGATGCCCTTGCGG TERM 1799 4734144 - 4734164 + r 70 -11.1 -3.36492 | TGTCAGACGCGGTCG GCGGGTTCG ACG TGGACCCGC TTGTCGAGTTCGCGC MSMEG_4647 4734955 - 4734131 - | carbohydrate kinase, PfkB, putative MSMEG_4648 4736106 - 4735102 - | DNA-binding protein MSMEG_4649 4736191 - 4737387 + | phytanoyl-CoA dioxygenase TERM 1800 4737711 - 4737659 - g 79 -14.9 -3.28924 | gap 3 GACGTTCTGCGAGAA GC-CGATCGCCGCGACCGC-CGC-CG AGAG CGCGCGCGTGGCCGAGGCGATCGCGC GCTCGGGGGTGCCCG MSMEG_4650 4737384 - 4738391 + | oxidoreductase YisS MSMEG_4651 4738388 - 4739257 + | AP endonuclease, family protein 2 MSMEG_4652 4739254 - 4740246 + | D-oliose 4-ketoreductase MSMEG_4653 4740243 - 4741019 + | AP endonuclease, family protein 2 superfamily protein MSMEG_4654 4742108 - 4741023 - | aldo/keto reductase MSMEG_4655 4742250 - 4743161 + | transcriptional regulator, AraC family protein MSMEG_4656 4744054 - 4743236 - | sugar ABC transporter ATP-binding protein MSMEG_4657 4745117 - 4744059 - | ABC transporter membrane protein MSMEG_4658 4746109 - 4745120 - | sugar ABC transporter substrate-binding protein MSMEG_4659 4747086 - 4746349 - | GntR-family protein transcriptional regulator MSMEG_4661 4747283 - 4748260 + | sugar kinase, ribokinase family protein MSMEG_4660 4749158 - 4748250 - | hypothetical protein MSMEG_4662 4748253 - 4749137 + | deoxyribose-phosphate aldolase superfamily protein MSMEG_4663 4749139 - 4750014 + | protein IolB MSMEG_4664 4750019 - 4751968 + | IolD protein TERM 1801 4752469 - 4752433 - g 70 -12.3 -3.30124 | gap 1, overlap 4752436 GGCCATGTTCGAGAA GTACGGCGTGCGTGCG CAATAC CACCCGCACGCCG-AC AGCCATGTGGACACC TERM 1802 4752467 - 4752436 - g 72 -15.1 -2.8294 | overlap 4752433 CATGTTCGAGAAGTA CGGCGTGCGTGCG CAATAC CACCCGCACGCCG ACAGCCATGTGGACA MSMEG_4665 4751978 - 4752898 + | IolE protein MSMEG_4666 4752923 - 4753960 + | myo-inositol 2-dehydrogenase MSMEG_4667 4754908 - 4753970 - | transcriptional regulator, LysR family protein MSMEG_4668 4755030 - 4757345 + | oxidoreductase alpha (molybdopterin) subunit fdhD 4757345 - 4758169 + | formate dehydrogenase accessory protein MSMEG_4670 4758307 - 4759647 + | N-glycosylation TERM 1803 4759705 - 4759667 - T 100 -24.8 -5.23396 | opp_overlap 4759673 AACAAGGAACAAAAA GAAGAAGCCCCCGGGA TATGGAG TCCCGGGGGCTTCTTC GAGTCTGGCTTACGC TERM 1804 4759673 - 4759699 + T 93 -17.3 -3.66844 | opp_overlap 4759667 GAACAAAAAGAAGAA GCCCCCGGGAT ATGGA GTCCCGGGGGC TTCTTCGAGTCTGGC clpX 4760995 - 4759715 - | ATP-dependent protease ATP-binding subunit TERM 1805 4761375 - 4761352 - R 80 -5.2 -4.71828 | overlap 4761355 ACCGCATGAAGAAAA CAAGCGCG AGCATGTA CGCGCTGG GGCACGGCCTGATCG TERM 1806 4761372 - 4761355 - R 76 -5.5 -4.46587 | overlap 4761352 GCATGAAGAAAACAA GCGCG AGCATGTA CGCGC TGGGGCACGGCCTGA TERM 1807 4761395 - 4761450 + r 71 -10.5 -3.56643 | gap 2, opp_overlap 4761403 4761408, overlap 4761408 CGGCCTGATCGAGCC CCGAT-AGACGA-AACGGGTCCCCGGC ATCG GCCGGGGACCCGTTGTCGTGTCAGAGA TTTACGACGTCTGCG TERM 1808 4761441 - 4761403 - R 100 -25.5 -2.87931 | gap 1, opp_overlap 4761395 4761408, overlap 4761408 TCGAGCCCCGATAGA CGA-AACGGGTCCCCGGC ATCG GCCGGGGACCCGTTGTCG TGTCAGAGATTTACG TERM 1809 4761435 - 4761408 - R 100 -24.2 -3.88498 | opp_overlap 4761408 4761395, overlap 4761403 CCCCGATAGACGAAA CGGGTCCCCGGC ATCG GCCGGGGACCCG TTGTCGTGTCAGAGA TERM 1810 4761408 - 4761435 + r 100 -24.2 -3.46602 | opp_overlap 4761403 4761408, overlap 4761395 CCCCGATAGACGAAA CGGGTCCCCGGC ATCG GCCGGGGACCCG TTGTCGTGTCAGAGA clpP 4762108 - 4761452 - | ATP-dependent Clp protease proteolytic subunit clpP 4762716 - 4762105 - | ATP-dependent Clp protease proteolytic subunit tig 4764235 - 4762826 - | trigger factor TERM 1811 4764569 - 4764589 + rH 100 -14 -4.8622 | GTCGCCCGCTCGGTA GGGACCGC CACGT GCGGTCCC TTTTTCGTTGCCGAG MSMEG_4677 4765307 - 4765128 - | hypothetical protein MSMEG_4678 4764745 - 4765266 + | hypothetical protein MSMEG_4679 4765263 - 4765766 + | hypothetical protein lipP 4765880 - 4767085 + | carboxylesterase, putative MSMEG_4681 4767137 - 4767955 + | hypothetical protein MSMEG_4682 4769675 - 4767975 - | Na+/H+ antiporter TERM 1812 4769473 - 4769463 - G 72 -3.2 -4.57073 | GATGTGTCGCAAAAA CGTC GGG AACG AGAAGTTCAGTGCCG MSMEG_4683 4770519 - 4769713 - | putative formamidopyrimidine-DNA glycosylase MSMEG_4684 4771014 - 4770535 - | ribose-5-phosphate isomerase B TERM 1813 4771932 - 4771986 + G 76 -13.6 -3.39895 | gap 2 CGACACCGCGATCGC CGCACTCGACGCCGTACCCGGTGAGC AGTCA GCCCACGGTG-ATGGCGTCGAG-GCG TTCCTTGATGAAGGC MSMEG_4686 4771078 - 4772004 + | putative oxidoreductase YdbC MSMEG_4685 4772919 - 4771960 - | oxidoreductase MSMEG_4687 4773356 - 4772916 - | cytosine deaminase TERM 1814 4773380 - 4773397 + r 71 -12.7 -3.01712 | opp_overlap 4773380 CATGCACGCGTAACA CCGTGGC CTGA GCCACGG TGTTACGCAACCGGA TERM 1815 4773397 - 4773380 - R 72 -12.7 -3.04461 | opp_overlap 4773380 CATGCACGCGTAACA CCGTGGC CTGA GCCACGG TGTTACGCAACCGGA MSMEG_4688 4774028 - 4773420 - | hypothetical protein MSMEG_4689 4774279 - 4774683 + | hypothetical protein pepN 4774721 - 4777303 + | aminopeptidase N MSMEG_4691 4777394 - 4777744 + | HNH nuclease TERM 1816 4777795 - 4777757 - T 100 -21.1 -3.86015 | gap 1, opp_overlap 4777769 TAGCGCCCCCACAAA CGCCGCGAGCGACCGTGC TCAC GCACGGTCGCTT-CGGCG ATCGAAAAAGGTTCA MSMEG_4692 4778281 - 4777808 - | hypothetical protein MSMEG_4693 4778507 - 4778268 - | hypothetical protein MSMEG_4694 4779137 - 4778559 - | HNH endonuclease family protein MSMEG_4695 4779348 - 4779743 + | hypothetical protein TERM 1817 4780333 - 4780303 - g 70 -12.5 -3.33315 | CGAAGACCTGGAGAA GACGCTGCGGTTC TGGCT GGACCGCGGCGTC GACGGGTTCCGCATC MSMEG_4696 4779743 - 4781281 + | alpha-amylase family protein MSMEG_4697 4781938 - 4781282 - | hypothetical protein MSMEG_4698 4782342 - 4781935 - | hypothetical protein MSMEG_4699 4787156 - 4782372 - | NAD-glutamate dehydrogenase TERM 1818 4785370 - 4785421 + g 74 -15 -3.07043 | AACCGCTGCGCGGTG TCACGCTGGGCCTCGGCGTCCGGC GCGT GCGGGATGCTGGGGTGCGGCGAGA TCTTGAACTGGTAGA MSMEG_4700 4788998 - 4787325 - | putative ABC transporter ATP-binding protein MSMEG_4701 4789618 - 4789106 - | hypothetical protein TERM 1819 4789777 - 4789755 - R 83 -14.8 -3.29511 | GCGATCTGGGGATAA CTGCCGGGCC CAC GGCGCGGCAG GCGCCTGCGACGCGT MSMEG_4702 4791876 - 4789876 - | ABC-type transporter, permease components MSMEG_4703 4794324 - 4791964 - | glycerol-3-phosphate acyltransferase MSMEG_4704 4795847 - 4794321 - | acyltransferase family protein MSMEG_4705 4797340 - 4795874 - | acyltransferase, ws/dgat/mgat subfamily protein MSMEG_4707 4798507 - 4797653 - | non-heme bromoperoxidase BPO-A2 MSMEG_4708 4798800 - 4799402 + | putative methyltransferase MSMEG_4709 4799413 - 4800162 + | enoyl-CoA hydratase MSMEG_4710 4801385 - 4800165 - | branched-chain alpha-keto acid dehydrogenase subunit E2 TERM 1820 4801206 - 4801170 - G 72 -14.3 -3.22774 | GATACGCACCAGCAA CGACCCCACGGCAAGGG TGT CCCCTGCCGCGCCGCCG AGCGCTTCCACCTTG MSMEG_4711 4802458 - 4801382 - | pyruvate dehydrogenase E1 component subunit beta MSMEG_4712 4803572 - 4802460 - | pyruvate dehydrogenase E1 component, alpha subunit MSMEG_4713 4804593 - 4803784 - | HpcH/HpaI aldolase/citrate lyase family protein TERM 1821 4804511 - 4804524 + g 73 -9.5 -3.86822 | opp_overlap 4804508 AGGATCACCACATCG GCCGC CGCG GCGGC TTTCTCGAAACGTTC MSMEG_4714 4805081 - 4804593 - | MoaC domain-containing protein MSMEG_4715 4806253 - 4805090 - | acyl-CoA dehydrogenase MSMEG_4716 4808259 - 4806250 - | acetyl-/propionyl-coenzyme A carboxylase alpha chain MSMEG_4717 4809797 - 4808256 - | carboxyl transferase domain-containing protein TERM 1822 4809657 - 4809633 - G 72 -13.5 -3.15544 | opp_overlap 4809656 CGCGAGCTCGAGGAA CGGGCTGCCGG GGT CCAGCAGGCCG TCGACGCGGTCGCGC TERM 1823 4809713 - 4809744 + g 72 -13.6 -3.14564 | GGCGTTCCCTCGCGC GTTCGGGCCCGCCG AGGG CGGCGGCCGCGAGC TTGCTGCGCAACTCG MSMEG_4718 4809888 - 4810493 + | transcriptional regulator, TetR family protein MSMEG_4719 4812360 - 4810498 - | peptidase S9, prolyl oligopeptidase TERM 1824 4812348 - 4812296 - G 84 -16.4 -3.53091 | opp_overlap 4812334, overlap 4812297 4812314 4812343 ACGGCCCGCGGGAAA CCGCCGTCGTCGACCAGATGCG-CGA ACG CCGTCGCATCCGG-CGACAACGACGC GCCGTAGTTCACCCG TERM 1825 4812347 - 4812297 - G 83 -19.9 -2.71712 | opp_overlap 4812334, overlap 4812296 4812314 4812343 CGGCCCGCGGGAAAC CGCCGTCGTCGACCAGATGCG-CGA ACG CCGTCGCATCCGG-CGACAACGACG CGCCGTAGTTCACCC MSMEG_4720 4812497 - 4813300 + | hypothetical protein MSMEG_4721 4814594 - 4813302 - | permease of the major facilitator superfamily protein MSMEG_4722 4814638 - 4815444 + | short-chain dehydrogenase MSMEG_4723 4817023 - 4815452 - | hypothetical protein MSMEG_4724 4817123 - 4817773 + | oligoribonuclease TERM 1826 4817918 - 4817941 + F 100 -18.2 -4.19238 | CCCCGATATCGGGAA CCCCGCCTAC GCGA GTAGGCGGGG TTTTCGCGTTGACGG MSMEG_4726 4818029 - 4818226 + | carbamoyl-phosphate synthase small chain TERM 1827 4818554 - 4818565 + F 82 -5.8 -4.82901 | opp_overlap 4818554 4818553, overlap 4818550 4818548 4818547 CCTTGGTCTCATAAC CGCA GTTA TGCG TTTTTATCCGGCCGA TERM 1828 4822357 - 4822398 + G 72 -15.2 -2.87132 | gap 2 GGTTTCGGCACCGTC GGCATCGGGCACGGCGCGGC CTTC GCCG-GCC-TGTCCGAGGCC TATGTCGCGACCGCG MSMEG_4727 4819204 - 4825539 + | mycocerosic acid synthase MSMEG_4728 4825597 - 4827039 + | condensation domain-containing protein MSMEG_4729 4827036 - 4828424 + | hypothetical protein TERM 1829 4829152 - 4829191 + G 82 -14.2 -3.77831 | gap 1, opp_overlap 4829147 4829142, overlap 4829166 GAAAACGAGAGCGCT CCGCGGACGCTGTCCACCG AAC CGGTGT-CGGTGCCCGCGG TTTCGGTGTTCGTCG MSMEG_4730 4828501 - 4829868 + | hypothetical protein MSMEG_4731 4829885 - 4831618 + | acyl-CoA synthetase TERM 1830 4831649 - 4831636 - f 70 -5.2 -4.42238 | overlap 4831637 CCATGGGAACGAAAA CGCC GGTCGT GGCG GCCATCCCGAACTAC MSMEG_4732 4831644 - 4832453 + | glycosyl transferase, group 2 family protein, putative MSMEG_4733 4833228 - 4832458 - | hypothetical protein MSMEG_4734 4835093 - 4833240 - | hypothetical protein MSMEG_4735 4836006 - 4835122 - | hypothetical protein TERM 1831 4835685 - 4835654 - G 74 -11.6 -3.72576 | gap 1, overlap 4835678 TGCGCGGCGACGAAA GCCG-CGATATCGCG ATG CACGAAATCGTCGGC ATCGACGAACATCAC MSMEG_4736 4837150 - 4836134 - | hypothetical protein MSMEG_4737 4838157 - 4837198 - | hypothetical protein TERM 1832 4838451 - 4838435 - H 81 -9.4 -4.25104 | GTCGGCCCACGAAAA GACGCG TTTGT CGCGTC GATGCTAGCCTCCCG MSMEG_4738 4838569 - 4839141 + | hypothetical protein MSMEG_4739 4839829 - 4839149 - | hypothetical protein MSMEG_4740 4841162 - 4839918 - | glycosyltransferase family protein 28 MSMEG_4741 4841337 - 4844360 + | MmpL protein TERM 1833 4844381 - 4844363 - T 75 -12.4 -3.55563 | overlap 4844364 AGCCCAGGCGTGAAA CCCGCTGC GCC GCAGCGGA TCACGTAACGGACTA TERM 1834 4844380 - 4844364 - T 71 -13.7 -2.73124 | overlap 4844363 GCCCAGGCGTGAAAC CCGCTGC GCC GCAGCGG ATCACGTAACGGACT MSMEG_4742 4845170 - 4844394 - | clavaldehyde dehydrogenase MSMEG_4743 4845342 - 4846067 + | hypothetical protein MSMEG_4744 4846064 - 4846534 + | hypothetical protein MSMEG_4745 4847740 - 4846538 - | ErfK/YbiS/YcfS/YnhG family protein TERM 1835 4847990 - 4848022 + r 100 -21.4 -3.81689 | opp_overlap 4847996, overlap 4847996 GGCGCACCACATATC GCGAAAGGGCGGGC CGAGT GCCCGCCCTTTTGC TTTCGTCCTGCTCTT TERM 1836 4847996 - 4848016 + r 100 -15.4 -4.59376 | opp_overlap 4847996, overlap 4847990 CCACATATCGCGAAA GGGCGGGC CGAGT GCCCGCCC TTTTGCTTTCGTCCT TERM 1837 4848016 - 4847996 - R 90 -15.4 -3.60234 | opp_overlap 4847996 4847990 CCACATATCGCGAAA GGGCGGGC CGAGT GCCCGCCC TTTTGCTTTCGTCCT MSMEG_4747 4848241 - 4848080 - | hypothetical protein MSMEG_4748 4848381 - 4848238 - | hypothetical protein MSMEG_4749 4848681 - 4848475 - | hypothetical protein TERM 1838 4848612 - 4848602 - G 79 -4.6 -4.68593 | CGCACCACCGAAAAA CAGC TTT GCCG ATGCGGCGCACCTCG MSMEG_4750 4848899 - 4848729 - | ornithine carbamoyltransferase MSMEG_4751 4849104 - 4849265 + | hypothetical protein TERM 1839 4849326 - 4849300 - T 93 -18 -3.74077 | overlap 4849302 GTCCACACAGTGAAA GAGCCCGCCGGT GAA ACCGGCGGGCTA ACACGTTGCGAGGCG TERM 1840 4849324 - 4849302 - T 100 -20.6 -3.45231 | overlap 4849300 CCACACAGTGAAAGA GCCCGCCGGT GAA ACCGGCGGGC TAACACGTTGCGAGG MSMEG_4752 4849581 - 4849354 - | hypothetical protein TERM 1841 4849405 - 4849432 + g 85 -17.8 -3.21099 | gap 1 GACGATCGCGCCCAC GCCCGCGAGTGAC GCC GTCAC-CGCGGGC TTCCTGATGAACCCC MSMEG_4753 4849686 - 4850159 + | antioxidant, AhpC/TSA family protein MSMEG_4754 4851178 - 4850171 - | K+-dependent Na+/Ca+ exchanger related-protein MSMEG_4755 4852504 - 4851185 - | hypothetical protein acpS 4852941 - 4852549 - | 4'-phosphopantetheinyl transferase MSMEG_4757 4862268 - 4852999 - | fatty acid synthase MSMEG_4758 4862285 - 4862494 + | hypothetical protein MSMEG_4759 4862347 - 4862508 + | hypothetical protein TERM 1842 4864076 - 4864133 + G 82 -18.4 -2.83715 | gap 2 GGCGCCCCATCCAGT TGTCGGGCGGCCAGCGACAGCGCGTCGC GCTC GC-ACGCGCACTCGTCGGCCGCCCG-CG TGTACTGCTGCTCGA MSMEG_4761 4863586 - 4864692 + | ABC transporter ATP-binding protein TERM 1843 4864838 - 4864808 - g 82 -14.7 -3.41051 | GGATTCGCAGCAGAA CGGCGGCGGTGAG GGCGG CTCACCACCGCAG ATGGAACCGCTGAGC MSMEG_4762 4864713 - 4865918 + | ABC transporter binding protein MSMEG_4763 4865897 - 4866736 + | ABC transporter permease protein MSMEG_4764 4866733 - 4867536 + | ABC transporter permease protein MSMEG_4765 4868219 - 4867557 - | transcriptional regulator, MerR family protein MSMEG_4767 4868495 - 4869766 + | major facilitator superfamily protein permease ltrA 4871082 - 4869751 - | low temperature requirement protein LtrA TERM 1844 4871264 - 4871217 - g 79 -15.4 -3.26471 | gap 1 TTACCGGGATATGAA GCAGCTCGCGCTACC-GCCGTCG TGC CGGCGGCTGGTCGCGCTGGCCGC GCTGAAGCAGCGGCC MSMEG_4768 4871158 - 4871703 + | transcriptional regulator MSMEG_4769 4871700 - 4871825 + | hypothetical protein MSMEG_4770 4872440 - 4871838 - | hypothetical protein MSMEG_4771 4873348 - 4872437 - | hypothetical protein MSMEG_4772 4875002 - 4873491 - | acyl-CoA synthetase TERM 1845 4874853 - 4874832 - G 73 -10.1 -3.85698 | gap 1, overlap 4874833 CCCGTGTGCGAGAAA GGCGC-CCGC GGC GCGGCGCACC CGGTCGGCGAGTTCG MSMEG_4773 4876189 - 4874999 - | amidohydrolase family protein MSMEG_4774 4877802 - 4876225 - | AMP-dependent synthetase and ligase MSMEG_4775 4877847 - 4878575 + | enoyl-CoA hydratase/isomerase family protein MSMEG_4776 4879120 - 4878596 - | glyoxalase/bleomycin resistance protein/dioxygenase MSMEG_4777 4879224 - 4879655 + | hypothetical protein MSMEG_4778 4879668 - 4880813 + | putative thiolase MSMEG_4779 4881501 - 4880896 - | regulatory protein TERM 1846 4882679 - 4882659 - g 75 -5.3 -4.63218 | GCCTTGCCAAGAAAA CCACCCAAC TCG GCGGAGTGG ACGTGCCTGCAGGCA MSMEG_4780 4881695 - 4883008 + | cytochrome p450 MSMEG_4781 4883097 - 4883573 + | hypothetical protein MSMEG_4782 4883577 - 4883996 + | hypothetical protein MSMEG_4783 4884396 - 4884016 - | hypothetical protein MSMEG_4784 4884580 - 4885089 + | hypothetical protein MSMEG_4785 4886830 - 4885100 - | mce-family protein mce1f TERM 1847 4886426 - 4886462 + g 87 -17.3 -3.31144 | CGGGCCGACCGCTTG CGGAATGGTGGTCTCGG ACG CCGGGATCACCGATCCG TTCTCCAGATACGGC MSMEG_4786 4888230 - 4886830 - | virulence factor mce family protein MSMEG_4787 4889687 - 4888227 - | virulence factor mce family protein TERM 1848 4888987 - 4889019 + g 70 -12 -3.28712 | gap 1 AGATCCGATCGGCTT CCGTC-GACCACGCT GGTG AGCGTGGCCAGGCGG TTCTGGAACGCCACC MSMEG_4789 4890726 - 4890232 - | hypothetical protein MSMEG_4790 4890445 - 4891767 + | IS1096, tnpA protein MSMEG_4791 4892476 - 4891775 - | IS1096, tnpR protein MSMEG_4792 4893052 - 4892576 - | virulence factor mce family protein MSMEG_4793 4894062 - 4893037 - | virulence factor Mce family protein TERM 1849 4894009 - 4893994 - G 87 -4.6 -5.1356 | overlap 4893995 4894005 4894006 GGTCATGAACAAAAA CGCGGT GAGA ACCGCC ATCACGACGGCGAAC MSMEG_4794 4895333 - 4894059 - | virulence factor TERM 1850 4894671 - 4894683 + g 72 -9.1 -4.07568 | overlap 4894614 GTTCAGGTTCGGCAG GCTCG GTT CGAGC TTTTCCAGGAGAGCC MSMEG_4795 4896191 - 4895343 - | ABC-transporter integral membrane protein TERM 1851 4895717 - 4895769 + g 72 -13.4 -3.15544 | gap 1, overlap 4895725 CGATGCGGGTGCTCA CGAGGTACTCGACGGGC-CGGATCG CCAT CGATTCGAGCGCGTCGATCTCCTCG TTGATGCGCATCGCG MSMEG_4796 4896982 - 4896209 - | hypothetical protein TERM 1852 4897007 - 4897029 + r 75 -4 -4.66938 | CCACCTATTGGCCAT CGGCTTGTGG TCC CTCCAGGTCG TTTTCTGTTGACACT MSMEG_4797 4897121 - 4896996 - | hypothetical protein TERM 1853 4897356 - 4897327 - R 77 -12.2 -3.60792 | gap 1, opp_overlap 4897327 GCCGCAATGGGCAAA CCTG-CCTGCCGG GTGTA CCGACAGGGCAGG TCCGTTCCGGATGTC MSMEG_4798 4898594 - 4897386 - | L-carnitine dehydratase/bile acid-inducible protein F TERM 1854 4897487 - 4897477 - G 72 -8.2 -4.07568 | GTCTGTTCGGCAAAA CCCG GCG CGGG CCCAGGACTCGGTGC MSMEG_4799 4900095 - 4898623 - | aldehyde dehydrogenase (NAD) family protein MSMEG_4800 4900364 - 4901065 + | 3-oxoacyl-(acyl-carrier-protein) reductase, putative TERM 1855 4901559 - 4901583 + G 77 -14.9 -3.14132 | CGAGGGAGCGTCGAT CGTCGCGACCG CGT CGGCCGCGGCG TTGATGGACGCCCAC MSMEG_4801 4901113 - 4901985 + | carveol dehydrogenase MSMEG_4802 4902029 - 4902220 + | hypothetical protein MSMEG_4803 4902298 - 4903659 + | cytochrome P450 superfamily protein TERM 1856 4903826 - 4903883 + G 74 -14.7 -3.07113 | opp_overlap 4903814 4903812 4903813, overlap 4903814 4903813 ACTGGCGATCGCAGC GGCCGGGTTCGCGGCTGCGTTGCCG TTGTCGGC CGGTATCGCATCCGCGCAGCCGGAC TTCAGTGCGGTCGTC MSMEG_4804 4903779 - 4904126 + | hypothetical protein MSMEG_4805 4905317 - 4904142 - | acyl-CoA dehydrogenase MSMEG_4806 4906324 - 4905320 - | putative acyl-CoA dehydrogenase MSMEG_4807 4906661 - 4907713 + | amidohydrolase family protein MSMEG_4808 4907782 - 4908876 + | amidohydrolase family protein MSMEG_4809 4908876 - 4909268 + | Rieske (2Fe-2S) domain-containing protein MSMEG_4810 4909265 - 4910176 + | hypothetical protein MSMEG_4811 4910643 - 4910179 - | hypothetical protein TERM 1857 4910596 - 4910648 + g 76 -13.4 -3.40403 | gap 2 CATGCCTGCGGCTAA CTGCGGTGGCCCGAGTTCGCCGCTGG GGT CCA-CGCCGA-CACGCACCACCGCAG TTCTCATGCCGCCAA TERM 1858 4911266 - 4911235 - g 77 -10.9 -3.93984 | gap 1 AAACCCACCGACAAA CCGC-CACGCCC GTTCGAGGA GGGCGTGGGCGG CTACCCCACGCTGAT MSMEG_4812 4910683 - 4911978 + | respiratory-chain NADH dehydrogenase domain-containing protein MSMEG_4813 4911975 - 4912205 + | hypothetical protein MSMEG_4814 4912253 - 4913908 + | hypothetical protein MSMEG_4815 4913911 - 4914807 + | hypothetical protein MSMEG_4816 4914807 - 4915625 + | 6-phosphogluconate dehydrogenase, NAD-binding TERM 1859 4916372 - 4916332 - g 70 -15.3 -2.72344 | GTTCATCGGCAAGGA CGTCGCGGTGGTCCGCG CGACAGC CGCGGACCTCGGCGCCG ACCTCGGGCTCCTCG MSMEG_4817 4915625 - 4916416 + | 6-phosphogluconate dehydrogenase, NAD-binding MSMEG_4818 4916557 - 4917759 + | putative cytochrome P450 123 MSMEG_4819 4917759 - 4917959 + | hypothetical protein MSMEG_4820 4918878 - 4917967 - | hypothetical protein MSMEG_4821 4919184 - 4918894 - | hypothetical protein MSMEG_4822 4919415 - 4919227 - | hypothetical protein MSMEG_4823 4920698 - 4919412 - | cytochrome p450 MSMEG_4824 4920923 - 4921702 + | hypothetical protein MSMEG_4825 4921789 - 4922448 + | transcriptional repressor, TetR family protein, putative MSMEG_4826 4922448 - 4923749 + | putative acyl-CoA dehydrogenase MSMEG_4827 4923746 - 4924777 + | aminoglycoside phosphotransferase MSMEG_4828 4924779 - 4925753 + | alcohol dehydrogenase, zinc-binding MSMEG_4829 4925880 - 4927070 + | cytochrome P450 MSMEG_4830 4927587 - 4927084 - | hypothetical protein MSMEG_4831 4928201 - 4927584 - | transcriptional regulator, TetR family protein TERM 1860 4927879 - 4927911 + g 79 -15.5 -3.29471 | opp_overlap 4927879 4927878, overlap 4927880 AACGTACCGACCAAC TCGGGTGCCCGGACG AAC CGTTCGGCCACCCGC TTGATCTCGTCGGCA TERM 1861 4927880 - 4927910 + g 79 -19 -2.57468 | opp_overlap 4927879 4927878, overlap 4927879 ACGTACCGACCAACT CGGGTGCCCGGACG AAC CGTTCGGCCACCCG CTTGATCTCGTCGGC MSMEG_4832 4929466 - 4928318 - | acyl-CoA dehydrogenase MSMEG_4833 4930627 - 4929479 - | putative acyl-CoA dehydrogenase TERM 1862 4929837 - 4929872 + g 72 -8.3 -4.10161 | gap 1, opp_overlap 4929859 ACCGCGCCCGCGCGG TACCG-CACGATGGGT GAAAG ACCCATCGCGACGGCA TTTTCCGCGGTCATC MSMEG_4834 4931879 - 4930620 - | L-carnitine dehydratase/bile acid-inducible protein F MSMEG_4835 4932643 - 4931885 - | 3-oxoacyl-[acyl-carrier-protein] reductase MSMEG_4836 4933868 - 4932660 - | FadE12_1 MSMEG_4837 4935187 - 4933892 - | amidohydrolase 2 MSMEG_4838 4935302 - 4935427 + | hypothetical protein MSMEG_4839 4935469 - 4935999 + | carboxymuconolactone decarboxylase TERM 1863 4936070 - 4936053 - g 71 -11.3 -3.54424 | overlap 4936035 GCGCATTTCCCGAAA CCAGCTG TCGG CAGCTGG ACCGAGAACTGGCCC MSMEG_4840 4936035 - 4937378 + | Rieske (2Fe-2S) domain-containing protein MSMEG_4841 4937371 - 4937718 + | hypothetical protein MSMEG_4842 4937721 - 4938941 + | amidohydrolase MSMEG_4843 4938925 - 4939368 + | hypothetical protein MSMEG_4844 4939369 - 4940490 + | acyl-CoA dehydrogenase MSMEG_4845 4940496 - 4941302 + | putative acyl-CoA dehydrogenase MSMEG_4846 4942116 - 4941334 - | enoyl-CoA hydratase TERM 1864 4941906 - 4941949 + g 74 -11.7 -3.75153 | gap 1 GTGAGATCTTCTCGG GCACTTCACCACC-GCCACG CAGAT CGTGCCCGGCGGAGAAGTGC TTTCCGTTGGCCCGC MSMEG_4847 4942335 - 4942997 + | transcriptional regulator, TetR family protein MSMEG_4848 4943034 - 4943165 + | hypothetical protein MSMEG_4849 4943348 - 4944193 + | carveol dehydrogenase MSMEG_4850 4945003 - 4944203 - | short-chain dehydrogenase/reductase SDR TERM 1865 4944374 - 4944329 - G 70 -8.9 -3.89524 | gap 1, opp_overlap 4944332 4944335, overlap 4944331 4944332 ACCCGACGCCAGAAA CAC-TGCCGCCCCGGCCATCTC ATC GACATGGCCGGGGCGTTTCATG GGTATCGCATCCCCG TERM 1866 4944335 - 4944367 + g 100 -23.5 -3.78022 | opp_overlap 4944332 4944331 4944329, overlap 4944332 CGCCAGAAACACTGC CGCCCCGGCCATCTC ATC GACATGGCCGGGGCG TTTCATGGGTATCGC MSMEG_4851 4947447 - 4945030 - | caib/baif family protein MSMEG_4852 4948409 - 4947453 - | enoyl-CoA hydratase, putative MSMEG_4853 4949535 - 4948402 - | peptidase, M24 family protein MSMEG_4854 4950802 - 4949525 - | peptidase, M24 family protein MSMEG_4855 4951971 - 4950799 - | amidohydrolase family protein MSMEG_4856 4953243 - 4952011 - | cytochrome P450 TERM 1867 4952600 - 4952614 + g 70 -9.2 -3.8211 | overlap 4952599 GACACGGCGTCCTCG GCGGGC TCG GCCTGC TTCTTCTCGATCAGG MSMEG_4857 4953470 - 4953276 - | hypothetical protein MSMEG_4858 4954178 - 4953474 - | transcriptional regulator, TetR family protein MSMEG_4859 4955095 - 4954289 - | oxidoreductase, short chain dehydrogenase/reductase family protein MSMEG_4860 4955922 - 4955092 - | hydrolase, alpha/beta fold family protein, putative MSMEG_4861 4956926 - 4955940 - | cyclase MSMEG_4862 4957775 - 4956939 - | 3-alpha-hydroxysteroid dehydrogenase MSMEG_4863 4959089 - 4957779 - | hypothetical protein MSMEG_4864 4960867 - 4959104 - | 3-ketosteroid-delta-1-dehydrogenase TERM 1868 4959507 - 4959543 + g 76 -8 -4.25848 | overlap 4959481 4959471 AGTTGGTCGAACCGT TCGGCCGTGGCG-CGCAG ATT CTGCGGCGGCACA-CCGA TTTTCGTCGCCAGTT TERM 1869 4959917 - 4959931 + g 72 -3.4 -4.56597 | opp_overlap 4959883, overlap 4959915 CTCGTCCAGCAGCTC GGTGGC GCC GCCGAC TTTTTCGCCGGCGCG MSMEG_4865 4961784 - 4960864 - | 3-(2,3-dihydroxyphenyl)propionate dioxygenase MSMEG_4866 4963423 - 4961732 - | 3-(3-hydroxyphenyl)propionate hydroxylase TERM 1870 4961969 - 4961998 + gr 82 -8.6 -4.4009 | gap 1, overlap 4961959 4961971 TGCGCCGGTGCGGTC GCCGACGATCACG ACGTC CG-GATCGTCGTC TTTTGTCCAGTGCAA TERM 1871 4961971 - 4961996 + gr 71 -9.8 -3.80877 | gap 1, overlap 4961959 4961969 CGCCGGTGCGGTCGC CGACGATCACG ACGTC CG-GATCGTCG TCTTTTGTCCAGTGC MSMEG_4867 4964336 - 4963428 - | 2-hydroxy-6-ketonona-2,4-dienedoic acid hydrolase TERM 1872 4964358 - 4964372 + H 93 -7.2 -5.14563 | CTCTCCTGACGACCG GAGAAT CAT ATTCTC TTTTTTCGTAAGCAC MSMEG_4868 4964467 - 4965192 + | transcriptional regulator MSMEG_4870 4965207 - 4966847 + | FAD binding domain-containing protein MSMEG_4869 4967720 - 4966836 - | LAO/AO transport system ATPase MSMEG_4871 4967796 - 4968560 + | 3-hydroxyacyl-CoA dehydrogenase type-2 TERM 1873 4968666 - 4968623 - f 71 -14 -2.70932 | overlap 4968609 4968608 4968653 4968664 CGCCGCCCGCAAGCA GCACTTCACGCACCTTCG GTGTATGA CGAACGTGCGTGAAACGC CGAAGCCGTCAACAC MSMEG_4872 4968654 - 4969424 + | short chain dehydrogenase MSMEG_4873 4970190 - 4969432 - | enoyl-CoA hydratase/isomerase MSMEG_4874 4971292 - 4970204 - | putative acyl-CoA dehydrogenase TERM 1874 4971162 - 4971146 - G 78 -5.8 -4.57569 | CGACGTGCCGAAAAA CCCTGC GCCGT ACAGGG CCTGGTGCCACTCCC MSMEG_4875 4972109 - 4971279 - | putative acyl-CoA dehydrogenase MSMEG_4876 4973466 - 4972087 - | acyl-CoA synthase TERM 1875 4972995 - 4973043 + g 71 -11.6 -3.57263 | gap 1 GGCCGAGCGCGTCGC GCCAGTGCTCGATGGCCGCGGCG AACC CGGCGTGGCTGTGGCGCAC-GGC TTTAGGCATGCCCGT MSMEG_4878 4973495 - 4973908 + | 2Fe-2S iron-sulfur cluster binding domain-containing protein MSMEG_4877 4974972 - 4973893 - | CaiB/BaiF family protein MSMEG_4879 4975925 - 4974969 - | hypothetical protein MSMEG_4880 4976320 - 4975922 - | methylmalonyl-CoA mutase C-terminal domain-containing protein MSMEG_4881 4978005 - 4976416 - | methylmalonyl-CoA mutase, N-terminus of large subunit MSMEG_4882 4978264 - 4979124 + | short chain dehydrogenase MSMEG_4883 4979121 - 4980611 + | AMP-dependent synthetase and ligase MSMEG_4884 4980630 - 4980932 + | hypothetical protein TERM 1876 4981429 - 4981458 + G 75 -4.9 -4.62069 | gap 1, overlap 4981433 4981439 CAGATGGGCGCCCCG GCAGGCACGGCGTC GGC GACGCTG-GCGTTC TTTTTGGCCTCGCAA TERM 1877 4981439 - 4981455 + G 79 -7.9 -4.42748 | overlap 4981433 4981429 CCCCGGCAGGCACGG CGTCGGC GAC GCTGGCG TTCTTTTTGGCCTCG MSMEG_4886 4980943 - 4982244 + | major facilitator family protein transporter MSMEG_4885 4983317 - 4982241 - | hypothetical protein TERM 1878 4983131 - 4983182 + g 73 -16.4 -2.50113 | gap 1, opp_overlap 4983128 4983126, overlap 4983130 CCTTGACGAACAGCG TGGCGGGCCCGGCAGGCCCGGGACG GTA CGTCACGG-CGAGTCGCGCCCGCCG GTTCGTGCCGTCGTC MSMEG_4887 4984516 - 4983314 - | cytochrome P450 MSMEG_4888 4985614 - 4984613 - | ligand-binding /sugar binding domain-containing protein MSMEG_4889 4986933 - 4985611 - | integral membrane transport protein TERM 1879 4987061 - 4987019 - R 100 -20.8 -4.08394 | overlap 4987022 AGACCGGCCGGAAAA CCACAAGCGG-CCGGATGCC ATGAG GGCATCCGGGCCGCTTG-GG CAGTGGTCGTACTAG TERM 1880 4987059 - 4987022 - R 100 -22.2 -3.08032 | gap 1, overlap 4987019 CCGGCCGGAAAACCA CAAGCGG-CCGGATGCC ATGAG GGCATCCGGGCCGCTTG GGCAGTGGTCGTACT ahpD 4987606 - 4987073 - | alkylhydroperoxidase, AhpD family protein MSMEG_4891 4988197 - 4987610 - | alkylhydroperoxide reductase MSMEG_4892 4988669 - 4988175 - | hypothetical protein MSMEG_4893 4988811 - 4990256 + | putative neutral zinc metallopeptidase MSMEG_4894 4990300 - 4990884 + | hypothetical protein TERM 1881 4990909 - 4990959 + TF 72 -11.4 -3.54307 | gap 1, overlap 4990951 4990953 AAGTGAGCTGCGTCA TATCGACGCGTGTCCAGTGATCA CTGTCA TGATCATTCGACGCG-GTCGGTA TTTAGACCGACTATT MSMEG_4895 4991022 - 4990906 - | hypothetical protein MSMEG_4896 4990987 - 4992840 + | acyl-CoA synthetase MSMEG_4898 4993024 - 4993398 + | hypothetical protein MSMEG_4900 4993399 - 4993743 + | Pks14 protein rdgB 4994342 - 4993740 - | non-canonical purine NTP pyrophosphatase, RdgB/HAM1 family protein TERM 1882 4993994 - 4993980 - G 70 -12.8 -3.26471 | overlap 4993962 GCACGCCGACACGAA CGCCGC GCC GCGGCG CTCGTCGGGCACATC rph 4995128 - 4994349 - | ribonuclease PH MSMEG_4902 4995921 - 4995163 - | metal-dependent hydrolase of the beta-lactamase superfamily protein III murI 4996817 - 4995984 - | glutamate racemase MSMEG_4904 4997473 - 4996814 - | rhomboid family protein TERM 1883 4997411 - 4997435 + g 73 -7.7 -4.10566 | GGTCAGGATCGTGAT GCCGCCGGTCT TCC ACGCCGGCGAC TTGTTCTTCTTCGGT cysM 4998482 - 4997511 - | cysteine synthase B TERM 1884 4998258 - 4998302 + g 74 -15 -3.09516 | overlap 4998261 GCCGCTGGTGGGTTC CAGGATCGTG-GCGCCGGGCTG CAG CAGCCCGTCGCGCTCGG-CCTG TTCGATCATCCGCAG MSMEG_4906 4998771 - 4998490 - | ThiS family protein MSMEG_4907 4999197 - 4998781 - | Mov34/MPN/PAD-1 family protein MSMEG_4908 5000252 - 4999233 - | endo-type 6-aminohexanoate oligomer hydrolase MSMEG_4909 5000837 - 5000259 - | hypothetical protein TERM 1885 5000595 - 5000628 + g 72 -13.2 -3.21747 | gap 1, opp_overlap 5000614, overlap 5000595 TCCGGCCGGGTGATC G-GTCTGCGGCCGGA AGAAA TCCGGCAGCAGACGC TTCATGGTGGCATCC clpS 5001146 - 5000844 - | ATP-dependent Clp protease adaptor protein ClpS pncB 5001213 - 5002517 + | nicotinate phosphoribosyltransferase MSMEG_4912 5002521 - 5004572 + | putative helicase MSMEG_4913 5004664 - 5006106 + | LpqM protein MSMEG_4914 5006972 - 5006124 - | virginiamycin B hydrolase MSMEG_4915 5009569 - 5006969 - | alpha-glucan phosphorylase family protein TERM 1886 5010256 - 5010227 - g 93 -19.3 -3.53012 | GGCGTGCCGCGCAAA CTGCGCGACCCCC TGCT GGAGGCCGCGCAG CAGTTGCGCACCCCC TERM 1887 5010643 - 5010589 - g 71 -11.9 -3.62522 | overlap 5010590 CAAGGGCCGCAACAA CTCGGTGACGGCCGCGCCCGGCGAC GTCGG GTCGCCGTGGGCGATCGGCAGCGAC GAGGGCGGTCACGAC TERM 1888 5010642 - 5010590 - g 70 -15.4 -2.77192 | overlap 5010589 AAGGGCCGCAACAAC TCGGTGACGGCCGCGCCCGGCGAC GTCGG GTCGCCGTGGGCGATCGGCAGCGA CGAGGGCGGTCACGA MSMEG_4916 5009741 - 5011819 + | alpha-amylase family protein glgB 5011827 - 5014037 + | glycogen branching enzyme MSMEG_4917 5014924 - 5014034 - | TPR repeat-containing protein MSMEG_4919 5015321 - 5014938 - | hypothetical protein MSMEG_4920 5016614 - 5015379 - | acetyl-CoA acetyltransferase TERM 1889 5015577 - 5015607 + g 74 -13.9 -3.2794 | GCCGAGTTCCTTGGT CGAGGCGAGCGCG ACGGC CGCGAACGCCTCG TTGATCTCGATGACA mce 5016676 - 5017149 + | methylmalonyl-CoA epimerase TERM 1890 5017185 - 5017154 - T 74 -13 -3.20207 | opp_overlap 5017177, overlap 5017156 AAGAGCACTGACGAA CATCCGCAGGTGGT CAGG ACCACCTGCGGGTC GGCCCGCGGTTGTCC TERM 1891 5017183 - 5017156 - T 82 -15.6 -3.15996 | opp_overlap 5017177, overlap 5017154 GAGCACTGACGAACA TCCGCAGGTGGT CAGG ACCACCTGCGGG TCGGCCCGCGGTTGT MSMEG_4922 5017466 - 5017167 - | hypothetical protein TERM 1892 5017425 - 5017442 + g 70 -9.1 -3.91897 | overlap 5017414 CGACGGCGGCAGCGG TGGTGGC GTCT GCCGCCA TTTGTCCCTACGCCG MSMEG_4923 5018140 - 5017466 - | hypothetical protein MSMEG_4924 5018187 - 5019794 + | adenylate cyclase, family protein 3 MSMEG_4925 5019822 - 5021360 + | transcriptional regulator, Ada family protein/DNA-3-methyladenine glycosylase II MSMEG_4926 5021497 - 5022819 + | IS1096, tnpA protein MSMEG_4927 5023528 - 5022827 - | IS1096, tnpR protein MSMEG_4928 5023632 - 5024129 + | methylated-DNA--protein-cysteine methyltransferase TERM 1893 5024157 - 5024197 + T 100 -19.2 -4.19177 | gap 1, opp_overlap 5024158, overlap 5024158 5024160 CAAATACATATACAA ATG-CCTGAGCCCCCCAAT CGGA ATTGGGGGGCTCAGGTCAA TTTGTGTTCGGCGGT TERM 1894 5024196 - 5024158 - T 100 -22.7 -4.21994 | gap 1, opp_overlap 5024157 5024158 5024160 AAATACATATACAAA TG-CCTGAGCCCCCCAAT CGGA ATTGGGGGGCTCAGGTCA ATTTGTGTTCGGCGG TERM 1895 5024158 - 5024196 + T 100 -22.7 -3.11024 | gap 1, opp_overlap 5024158, overlap 5024157 5024160 AAATACATATACAAA TG-CCTGAGCCCCCCAAT CGGA ATTGGGGGGCTCAGGTCA ATTTGTGTTCGGCGG TERM 1896 5024160 - 5024193 + T 100 -25.5 -2.76227 | opp_overlap 5024158, overlap 5024158 5024157 ATACATATACAAATG CCTGAGCCCCCCAAT CGGA ATTGGGGGGCTCAGG TCAATTTGTGTTCGG TERM 1897 5024339 - 5024362 + T 78 -3.8 -4.73614 | overlap 5024321 5024320 5024351 TCTCTTATGTGGTGA CCCACATG AGAGCAAA CTTGTGGG TTTGTTTTGGTGGTG TERM 1898 5025565 - 5025576 + T 74 -2.2 -4.7254 | overlap 5025551 CGTCTTGCGACTTCG CACG GACC TGTG TTTTTAGTAAACAGT TERM 1899 5029494 - 5029479 - T 75 -3.2 -4.72696 | TCCAAACAAAAACAA CCCATC CAAA GACAGG TGAATTCACAATCAG TERM 1900 5029550 - 5029531 - T 72 -2.8 -4.67982 | overlap 5029532 TCTGACCTAACAAAA CGACACCA AAAC TGGCATCA AAAACATCCACCCCT murA 5031105 - 5029849 - | UDP-N-acetylglucosamine 1-carboxyvinyltransferase MSMEG_4934 5031204 - 5031776 + | ATP:cob(I)alamin adenosyltransferase MSMEG_4933 5032204 - 5031770 - | hypothetical protein TERM 1901 5032219 - 5032179 - G 84 -19.8 -2.83894 | AGTACCAGGAGCACA GCGATGAGCGCGACCATG CCGAT CATGGACGCGCTCATCGA TGTGACTAGTCGATC atpC 5032590 - 5032225 - | F0F1 ATP synthase subunit epsilon atpD 5034054 - 5032627 - | F0F1 ATP synthase subunit beta TERM 1902 5034024 - 5034034 + g 75 -6.8 -4.4009 | overlap 5034021 5034020 TGATGCGGACTACGC GACC CGC GGTC TTTTCTGCAGTAGCA atpG 5035015 - 5034092 - | F0F1 ATP synthase subunit gamma atpA 5036669 - 5035023 - | F0F1 ATP synthase subunit alpha MSMEG_4939 5038053 - 5036716 - | F0F1 ATP synthase subunit delta MSMEG_4940 5038566 - 5038054 - | F0F1 ATP synthase subunit B atpE 5038836 - 5038576 - | F0F1 ATP synthase subunit C atpB 5039696 - 5038938 - | F0F1 ATP synthase subunit A MSMEG_4943 5040171 - 5039725 - | hypothetical protein TERM 1903 5039893 - 5039872 - G 100 -15.9 -4.19177 | ACTCTTGAAGACAAA CGCGATCGC GAGT GCGATCGCG GTGATGACGAGAAGA MSMEG_4944 5040740 - 5040168 - | hypothetical protein MSMEG_4945 5040459 - 5041781 + | IS1096, tnpA protein MSMEG_4946 5042490 - 5041789 - | IS1096, tnpR protein TERM 1904 5042620 - 5042640 + r 70 -2.3 -4.6902 | opp_overlap 5042612, overlap 5042625 5042632 CCGAAATCCGATGGG CCGGGCCGG CAA CCCGCGAGG TTTTTCGGGTTCTGC MSMEG_4947 5043942 - 5042722 - | glycosyl trasferase MSMEG_4948 5044615 - 5043950 - | Sua5/YciO/YrdC/YwlC family protein MSMEG_4949 5045498 - 5044653 - | modification methylase, HemK family protein prfA 5046588 - 5045509 - | peptide chain release factor 1 TERM 1905 5045734 - 5045779 + g 71 -9.5 -3.79906 | gap 1, overlap 5045737 CTCGGCCTGCTCCTC GGCCAGGGCC-TGCAGCCGCGC GGC GAGCACCTGCATGGCGCGGGCC TTGTTCTGCAGCTGC TERM 1906 5046680 - 5046628 - R 90 -15.6 -3.55815 | gap 1, overlap 5046619 5046618 5046630 5046631 5046634 5046645 AAATACCTGCTGAAA CAGCAACAGCGCCCAAATCTGACGC GTAT GCGACAGA-TCGGGCGCCGTTGAGG TAGCTACTTGTCCGC TERM 1907 5046678 - 5046630 - R 90 -16.8 -3.35224 | gap 1, overlap 5046619 5046618 5046628 5046631 5046634 5046645 ATACCTGCTGAAACA GCAACAGCGCCCAAATCTGACGC GTAT GCGACAGA-TCGGGCGCCGTTGA GGTAGCTACTTGTCC TERM 1908 5046677 - 5046631 - R 91 -20.3 -2.60813 | gap 1, overlap 5046619 5046618 5046630 5046628 5046634 5046645 TACCTGCTGAAACAG CAACAGCGCCCAAATCTGACGC GTAT GCGACAGA-TCGGGCGCCGTTG AGGTAGCTACTTGTC TERM 1909 5046674 - 5046634 - R 90 -16.2 -3.45571 | gap 1, overlap 5046631 5046630 5046628 5046645 CTGCTGAAACAGCAA CAGCGCCCAAATCTGACGC GTAT GCGACAGA-TCGGGCGCCG TTGAGGTAGCTACTT rpmE 5046911 - 5046684 - | ribosomal protein L31 MSMEG_4952 5048623 - 5047025 - | acyl-CoA synthetase MSMEG_4953 5048768 - 5049373 + | putative transcriptional regulator TERM 1910 5049416 - 5049383 - T 100 -18.9 -4.11394 | opp_overlap 5049391, overlap 5049384 5049386 AGCTGATCCTCAAAA GCACGAAACCCCCGC CGAA GCGGGGGTTCCGTGT GAGCCGTCGGATCAG TERM 1911 5049415 - 5049384 - T 100 -22.4 -3.06515 | opp_overlap 5049391, overlap 5049383 5049386 GCTGATCCTCAAAAG CACGAAACCCCCGC CGAA GCGGGGGTTCCGTG TGAGCCGTCGGATCA TERM 1912 5049413 - 5049386 - T 93 -19.2 -3.09004 | opp_overlap 5049391, overlap 5049384 5049383 TGATCCTCAAAAGCA CGAAACCCCCGC CGAA GCGGGGGTTCCG TGTGAGCCGTCGGAT TERM 1913 5049391 - 5049408 + T 76 -14.1 -3.1247 | opp_overlap 5049386 5049384 5049383 CTCAAAAGCACGAAA CCCCCGC CGAA GCGGGGG TTCCGTGTGAGCCGT rho 5051422 - 5049428 - | transcription termination factor Rho TERM 1914 5051168 - 5051198 + g 72 -13.3 -3.18274 | gap 1 CTGGGCGTCGGCGGT CG-CCGGGCTGCTG GCCT CAGCGGTCCGGCCG TTGGATTCGCCTCGG thrB 5052661 - 5051708 - | homoserine kinase thrC 5053757 - 5052675 - | threonine synthase MSMEG_4957 5055073 - 5053754 - | homoserine dehydrogenase lysA 5056494 - 5055070 - | diaminopimelate decarboxylase argS 5058143 - 5056491 - | arginyl-tRNA synthetase TERM 1915 5058954 - 5058992 + r 100 -28.4 -4.08064 | opp_overlap 5058957, overlap 5058957 CAACCACGATCCACT CAATCAGTGGCGATCCGC TCA GCGGGTCGCCACTGATTG TTTTCGGGCACCATT TERM 1916 5058957 - 5058989 + r 100 -24.3 -4.17048 | opp_overlap 5058957, overlap 5058954 CCACGATCCACTCAA TCAGTGGCGATCCGC TCA GCGGGTCGCCACTGA TTGTTTTCGGGCACC TERM 1917 5058989 - 5058957 - R 100 -22.1 -3.08464 | opp_overlap 5058957 5058954 CCACGATCCACTCAA TCAGTGGCGATCCGC TCA GCGGGTCGCCACTGA TTGTTTTCGGGCACC MSMEG_4961 5059334 - 5059059 - | hypothetical protein MSMEG_4963 5059596 - 5060855 + | peptide synthetase ScpsB, putative MSMEG_4962 5062073 - 5060847 - | hypothetical protein TERM 1918 5061851 - 5061882 + g 82 -16 -3.28712 | gap 1 GGTCGAACCGCGCCC GTTCGACGCGGCTGT GCG GCAG-CGCGTCGAAC TTCTCGAACAGGCCC MSMEG_4964 5062879 - 5062076 - | transcriptional regulator, TetR family protein TERM 1919 5062967 - 5062939 - R 100 -13.8 -5.02476 | opp_overlap 5062939 ACAGCGGCGAAAAAA CGAGCGTGCGCG AAATA CACGCCCGCTCG TTCCTGCCGAACAGC MSMEG_4965 5063429 - 5062989 - | hypothetical protein TERM 1920 5063341 - 5063375 + g 76 -7.6 -4.33819 | opp_overlap 5063345, overlap 5063343 AGCGCGACACCGGCA CAGAGCGCCCCCGCGG CGA CCGTCGCGGCGATCAG TTTGTTCTGCATCAT MSMEG_4966 5064157 - 5063477 - | CalU12 protein TERM 1921 5063996 - 5064007 + g 77 -3.6 -4.69664 | GGTGTCGAAAACGTA GTCG CCCG CGGC TTTTTCGGTGATGTC MSMEG_4967 5065035 - 5064154 - | hypothetical protein MSMEG_4968 5065204 - 5066415 + | two-component system sensor kinase MSMEG_4969 5066403 - 5067047 + | two-component system response regulator MSMEG_4970 5067065 - 5067952 + | hypothetical protein MSMEG_4971 5068975 - 5067953 - | oxidoreductase MSMEG_4972 5069505 - 5068972 - | acetyltransferase MSMEG_4973 5069552 - 5069935 + | glyoxalase/bleomycin resistance protein/dioxygenase MSMEG_4974 5070406 - 5069936 - | rrf2 family protein (putative transcriptional regulator) MSMEG_4975 5071123 - 5070449 - | flavin-nucleotide-binding protein MSMEG_4976 5071716 - 5071120 - | isochorismatase hydrolase MSMEG_4977 5072496 - 5071765 - | 3'(2'),5'-bisphosphate nucleotidase, putative cysNC 5074346 - 5072493 - | bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein cysD 5075281 - 5074346 - | sulfate adenylyltransferase subunit 2 MSMEG_4980 5076751 - 5075384 - | major facilitator superfamily protein MFS_1 MSMEG_4981 5077787 - 5076771 - | phosphotransferase enzyme family protein, putative MSMEG_4982 5078908 - 5077781 - | hypothetical protein MSMEG_4983 5078986 - 5079549 + | transcriptional regulator, TetR family protein MSMEG_4984 5079613 - 5080017 + | hypothetical protein MSMEG_4985 5080597 - 5080106 - | carbonic anhydrase MSMEG_4986 5082547 - 5080643 - | glycosyl transferase, family protein 39 MSMEG_4987 5083849 - 5082551 - | glycosyl transferase TERM 1922 5083394 - 5083346 - G 70 -13 -3.26471 | gap 1 GCAGCGCGAGATGAA CTCGCGCTTGGCGCCGCGGATCA CGCG CGAACCGCGGC-CCAGCCGCGTG CCGATCGCGAGATCG MSMEG_4988 5085776 - 5083905 - | integral membrane protein MSMEG_4989 5087411 - 5085828 - | sensor histidine kinase MSMEG_4990 5088138 - 5087389 - | DNA-binding response regulator MSMEG_4992 5088250 - 5088714 + | hypothetical protein MSMEG_4991 5088929 - 5088696 - | hypothetical protein MSMEG_4993 5089329 - 5089057 - | hypothetical protein MSMEG_4994 5089394 - 5089675 + | flagella membrane glycoprotein 1B, putative MSMEG_4995 5089843 - 5090820 + | oligopeptide transport system permease protein AppB oppC 5090817 - 5091749 + | ABC transporter, permease protein OppC TERM 1923 5093299 - 5093273 - g 73 -10 -3.85698 | overlap 5093275 TCGGGCGGGCAGAAA CAGCGCATCGGC ATC GCCCGCGCGCTG GCGCTGCGCCCCAAG TERM 1924 5093308 - 5093275 - g 73 -12.3 -3.51934 | overlap 5093273 GGGCGGGCAGAAACA GCGCATCGGCATCGC CCGC GCGCTGGCGCTGCGC CCCAAGATCATCGCG oppD 5091746 - 5093590 + | ABC transporter, ATP-binding protein OppD TERM 1925 5094333 - 5094298 - g 71 -11.8 -3.62046 | gap 1, opp_overlap 5094298 5094301 5094316 CGAGGTGTTCAACAA GGGCCAGCTGAACGGTC CCG GACCG-TCGGCCGGTCC GTTCATGGTCTCCAA MSMEG_4999 5093630 - 5095336 + | extracellular solute-binding protein, family protein 5 MSMEG_4998 5096555 - 5095326 - | hydrolase, alpha/beta fold family protein MSMEG_5001 5096638 - 5097858 + | pesticide degrading monooxygenase MSMEG_5000 5098754 - 5097849 - | transcriptional regulator, LysR family protein MSMEG_5003 5098832 - 5099509 + | O-methyltransferase, family protein 3 MSMEG_5002 5102139 - 5099506 - | hypothetical protein TERM 1926 5101939 - 5101892 - G 70 -9.2 -3.83026 | TTGCGGTACAGGAAA CGATATGGGC-CCGTGGAGATC TCGGCG GA-CACCTCGGCGCCCACATCG GCGTGCGTGGGCTTG MSMEG_5004 5103290 - 5102136 - | DNA repair exonuclease MSMEG_5006 5103405 - 5103905 + | phosphohistidine phosphatase MSMEG_5005 5104462 - 5103902 - | LprC protein MSMEG_5007 5104992 - 5104459 - | LprB protein MSMEG_5008 5105176 - 5106912 + | ABC transporter, ATP-binding protein MSMEG_5009 5106924 - 5108801 + | ABC transporter MSMEG_5010 5109329 - 5108808 - | hypothetical protein MSMEG_5011 5109594 - 5109397 - | hypothetical protein MSMEG_5012 5109367 - 5109666 + | trans-sialidase, putative MSMEG_5013 5109663 - 5110502 + | hypothetical protein MSMEG_5014 5112737 - 5110506 - | copper-translocating P-type ATPase MSMEG_5015 5113583 - 5112759 - | secreted protein TERM 1927 5113432 - 5113490 + g 80 -16.8 -3.14132 | gap 3, opp_overlap 5113467 AGCGGCACCTGCGTG CCGGGCGCCACCGACTCGTCGGCCAACTC AAGG GAGTAG-CCGGCG-GCCGGTG-CGTCCGG TTCGTCCGCCCACAC MSMEG_5016 5113779 - 5113573 - | hypothetical protein MSMEG_5017 5114435 - 5113830 - | lipoprotein MSMEG_5018 5115583 - 5114459 - | adenylate and guanylate cyclase catalytic domain-containing protein MSMEG_5019 5116885 - 5115599 - | regulatory protein MSMEG_5020 5117706 - 5116927 - | acetoin(diacetyl) reductase MSMEG_5021 5118784 - 5117738 - | alcohol dehydrogenase, zinc-containing MSMEG_5022 5118895 - 5120736 + | flavin-containing monooxygenase FMO TERM 1928 5120753 - 5120810 + F 70 -14.2 -2.62712 | opp_overlap 5120770 5120772 5120773, overlap 5120753 5120755 5120792 GTTTTTCCGGCACAC GGGCGCCAGGTATACAAGAC-GCATGCG ACGA CGCGTGCTGACG-GTGTGCCTGGCGCTC GTCTTGTGTGTGGTG MSMEG_5023 5120775 - 5121482 + | chitooligosaccharide deacetylase MSMEG_5024 5121479 - 5121967 + | T/U mismatch-specific DNA glycosylase MSMEG_5026 5122023 - 5123474 + | hypothetical protein MSMEG_5025 5124289 - 5123453 - | putative transcriptional regulator TERM 1929 5124259 - 5124272 + g 86 -9.5 -4.56597 | overlap 5124238 GGCGACCGACGACGC CGCGC TCTG GCGCG TTTTTCCAAGCGGCC MSMEG_5027 5124317 - 5124787 + | glyoxalase family protein TERM 1930 5124978 - 5124927 - g 75 -8.6 -4.11216 | gap 1, overlap 5124928 TGGTGATCCCGAAAA CCCACACCGTCGACC-TCACGGACA CGC CGCCGGAGACGGTCGCCGGTATGGC GGCCGTCGGCCAGCG MSMEG_5028 5124797 - 5125234 + | HIT family protein MSMEG_5030 5125244 - 5125693 + | hypothetical protein MSMEG_5029 5126739 - 5125690 - | alkanal monooxygenase alpha chain MSMEG_5031 5127625 - 5126753 - | uracil-DNA glycosylase superfamily protein MSMEG_5032 5129328 - 5128678 - | putative transcriptional regulator MSMEG_5034 5129405 - 5130091 + | hypothetical protein MSMEG_5035 5130102 - 5130584 + | hypothetical protein MSMEG_5037 5130603 - 5131970 + | oxidoreductase, FAD-binding MSMEG_5036 5132719 - 5131967 - | rhomboid family protein TERM 1931 5134065 - 5134092 + G 74 -12.7 -3.66874 | gap 1 GACGCCGTGGTGTGG GCGGGCGGCAGC TACGT GC-GTCGCCCGC TTTCGGTGCCGTTCC MSMEG_5038 5132901 - 5134121 + | putative cytochrome P450 123 MSMEG_5040 5134121 - 5134708 + | transcriptional regulator, TetR family protein MSMEG_5039 5135370 - 5134693 - | siderophore-interacting protein TERM 1932 5134767 - 5134783 + g 71 -11.5 -3.61398 | opp_overlap 5134758 5134760 GGAACACACGGGCGA CCGCGCG CGT CGTGCGG TTGTTGCACGCGACC MSMEG_5041 5136574 - 5135426 - | acyltransferase TERM 1933 5136399 - 5136371 - G 74 -11 -3.75024 | gap 1, overlap 5136368 GCTGAGCACGAAGAA GATCGGCACGCCG ATCT CGGCGCGC-GACC ACACCAGGCCCAGAT MSMEG_5042 5138316 - 5136571 - | ATP-dependent rna helicase, dead/deah box family protein TERM 1934 5138268 - 5138301 + g 74 -12.5 -3.62775 | gap 1, opp_overlap 5138253 TCGGTTCAGTAGGGG CCGAATCCGAGT-TGG TTA CCGGACTCGGATCCGG TTCTTGCGAGGTCAT MSMEG_5043 5138407 - 5138946 + | LprE protein MSMEG_5044 5138997 - 5142446 + | ATPase TERM 1935 5143773 - 5143797 + G 78 -17.2 -2.76171 | overlap 5143770 AAGGCCGCGTTGGAT CCGCGGGGTT ACCTG AACCCCGCGG TGCTGTTCGCTCAGT MSMEG_5045 5142459 - 5143814 + | D-2-hydroxyglutarate dehydrogenase MSMEG_5046 5145528 - 5143822 - | drug transporter TERM 1936 5145615 - 5145598 - R 72 -8.4 -3.96216 | CCCCTATCCAAACAA GTCCGC CCGTTC GCGGAC CGGTCAGGCCGGTTC MSMEG_5047 5146872 - 5145619 - | drug resistance transporter Bcr/CflA subfamily protein TERM 1937 5146053 - 5146002 - G 72 -13.7 -3.16492 | overlap 5146000 TCAGACCGACGAACA CCGC-TCCCACCACGGTCGCCGACG CCAG CG-CGGCCACCGTGATGGCCTGCGG GGTGAAACGCCGCAG MSMEG_5048 5147070 - 5147831 + | hypothetical protein kgd 5147981 - 5151664 + | alpha-ketoglutarate decarboxylase TERM 1938 5151700 - 5151741 + F 100 -20.4 -4.20516 | opp_overlap 5151699 5151698, overlap 5151698 5151702 CCCCGCGCGTAAACC TGGGCACCCTGGTTGGTT TCGATT AACCAACTAGGGTGCCTA TTTCTTGGATCGCCC TERM 1939 5151702 - 5151739 + F 100 -20.8 -3.70307 | opp_overlap 5151699 5151698, overlap 5151698 5151700 CCGCGCGTAAACCTG GGCACCCTGGTTGGTT TCGATT AACCAACTAGGGTGCC TATTTCTTGGATCGC MSMEG_5051 5151761 - 5153071 + | major facilitator superfamily protein map 5153832 - 5153068 - | methionine aminopeptidase, type I MSMEG_5052 5153902 - 5154162 + | DNA-binding protein MSMEG_5053 5154241 - 5155065 + | short chain alcohol dehydrogenase MSMEG_5054 5155915 - 5155073 - | ABC transporter, quaternary amine uptake transporter (QAT) family protein, substrate-binding protein TERM 1940 5155509 - 5155544 + g 84 -16.9 -3.40403 | gap 1, overlap 5155538 TCGGTGCCGTCCCAT GCCCGCG-TGGTGGCC TCGGT GGCCACCAGCGCCGGC TTGTCCTGCGCCGAC TERM 1941 5155687 - 5155667 - G 80 -16.9 -3.21416 | CAGCGCGACCAGCAA CTGCCCGGT GAA ACCGGGCAG CACCGTCACGGCCGA MSMEG_5055 5157066 - 5155924 - | NAD-dependent malic enzyme corA 5157213 - 5158280 + | magnesium and cobalt transport protein CorA MSMEG_5057 5158890 - 5158285 - | hypothetical protein MSMEG_5058 5160107 - 5158887 - | ABC transporter, ATP-binding protein SugC MSMEG_5059 5160948 - 5160112 - | ABC transporter, permease protein SugB MSMEG_5060 5161865 - 5160948 - | ABC transporter, permease protein SugA TERM 1942 5161857 - 5161892 + g 70 -3.3 -4.4017 | gap 1, overlap 5161890 CGAGGGGGTCACAGC GGCGGTC-ACGGAA TCAGCCCCT TACCGTCGATCGCC TTTTGTACGGCTTCG MSMEG_5061 5163259 - 5161862 - | extracellular solute-binding protein MSMEG_5062 5163882 - 5163424 - | hypothetical protein TERM 1943 5163712 - 5163660 - G 78 -8.4 -4.29738 | gap 2 TCAGACCGATGAAAA GACCCAG-CCA-CGCGCCCGAGAGCA CGC CGCCCCCGAGCACCTTGGGCCAGGTC AGCCGGCCGGTCACG MSMEG_5063 5164005 - 5164454 + | integral membrane protein MSMEG_5064 5165429 - 5164473 - | malyl-CoA lyase MSMEG_5065 5165455 - 5166741 + | Mg/Co/Ni transporter MgtE MSMEG_5066 5166738 - 5167286 + | integral membrane protein MSMEG_5067 5167401 - 5168702 + | secreted protein TERM 1944 5169323 - 5169346 + G 75 -5.2 -4.57073 | overlap 5169324 GTGTGGCGCGGGCCC ATGCTGCACC GCGC GCTGCAGCAG TTTTTGGCCGACGTG MSMEG_5068 5168711 - 5169850 + | Mrp protein MSMEG_5069 5170255 - 5169857 - | sec-independent translocase TERM 1945 5170020 - 5170043 + g 70 -12.4 -3.37464 | gap 1 TGTTTGGTGATCGCC GC-GCGCGGCG TCA TGCCGCGCAGC TTCTGGAGTTCCTGC MSMEG_5070 5171754 - 5170258 - | trypsin MSMEG_5071 5172201 - 5171803 - | hypothetical protein MSMEG_5072 5173063 - 5172290 - | RNA polymerase sigma factor SigE MSMEG_5073 5173240 - 5173872 + | O-methyltransferase, family protein 3 MSMEG_5074 5173964 - 5174614 + | transcriptional regulatory protein MSMEG_5075 5174611 - 5175513 + | ABC transporter ATP-binding protein TERM 1946 5177026 - 5177067 + G 70 -14.5 -2.82516 | gap 2 TCGTGGCAGTGCTTC TGGCGTGTGCGGCGGGCGG GCTCTA CCGCC-GCCGCG-ACGCCG TCTGATCCTCGGACA MSMEG_5076 5175510 - 5177072 + | ABC transporter membrane-spanning protein MSMEG_5077 5177093 - 5177767 + | integral membrane protein MSMEG_5079 5177781 - 5178398 + | hypothetical protein glgC 5179566 - 5178352 - | glucose-1-phosphate adenylyltransferase MSMEG_5080 5179761 - 5180924 + | glycogen synthase MSMEG_5081 5181146 - 5180979 - | hypothetical protein tag 5181892 - 5181263 - | DNA-3-methyladenine glycosylase I MSMEG_5083 5182272 - 5181889 - | hypothetical protein MSMEG_5084 5183223 - 5182312 - | glycosyl transferase, group 2 family protein folP 5184143 - 5183268 - | dihydropteroate synthase MSMEG_5086 5185940 - 5184162 - | acyl-CoA synthetase TERM 1947 5184980 - 5185038 + g 70 -14.5 -2.71483 | overlap 5184975 CCCAGATGGCCGGCC GCAGCCCGTTTCCGA-CGATCACGCGCAC CTT GTGCGCGCGGTCGGTCGGCT-TGGGCGGC TGGTTGAGCAGGTAT MSMEG_5087 5186626 - 5186042 - | hypothetical protein MSMEG_5088 5186695 - 5188770 + | TPR repeat-containing protein TERM 1948 5190397 - 5190387 - g 72 -8.2 -3.96999 | TGATACGGAAAAAGA CCGC AGA GCGG GGTTGATGCCAAATG TERM 1949 5190411 - 5190421 + G 72 -4.6 -4.43844 | opp_overlap 5190411 GGGGTTGATGCCAAA TGCC AAG GGCG TTTTCTCAGTACTAA TERM 1950 5190496 - 5190506 + G 78 -8.2 -4.26076 | opp_overlap 5190496 AGCCAGGCCATGATA GCGG AAA CCGC TTTTGCTGAGAATCC MSMEG_5089 5188843 - 5191101 + | hypothetical protein TERM 1951 5191227 - 5191237 + G 72 -3.2 -4.66609 | GCGGGTTGGCCCCAA TCGT TGA GCGA TTTTTCGATGACCTG MSMEG_5090 5191194 - 5191916 + | hypothetical protein TERM 1952 5192004 - 5191984 - f 84 -13.3 -3.79113 | AGGGTGGGAGAACAA GCAAGGCTG CGG CAGCCCTGC CAGACTGCCAACCCG TERM 1953 5192570 - 5192592 + G 72 -3.2 -4.56597 | overlap 5192571 5192572 TTCGCGGTGATCAGT ACCGACGCGG AAG CCGCTTCGAC TTTTTCCGACGCAGC MSMEG_5091 5192084 - 5193022 + | hypothetical protein MSMEG_5092 5193071 - 5193205 + | hypothetical protein MSMEG_5093 5193475 - 5194176 + | IS1096, tnpR protein MSMEG_5094 5195506 - 5194184 - | IS1096, tnpA protein MSMEG_5096 5196844 - 5196509 - | ISMsm1, transposase orfA TERM 1954 5197270 - 5197283 + GH 81 -8.1 -4.56597 | overlap 5197262 AAGTGGTCGAACTTC GTCGC GAAG GCGAC TTTTTCAGGACGGGC MSMEG_5097 5196939 - 5197652 + | hypothetical protein TERM 1955 5197681 - 5197654 - gT 71 -10.6 -3.57144 | gap 1, overlap 5197664 GGCCTGATGCTTAAA CCCAGGCAAA-GC GCG GCATCCGCCTGGG GACCTCACCGCGCAA MSMEG_5098 5198538 - 5198422 - | hypothetical protein MSMEG_5099 5197576 - 5198595 + | hypothetical protein TERM 1956 5199328 - 5199282 - g 70 -12 -3.33261 | overlap 5199293 CGCCAAGGCCGAGAA CGCCATCAAGACCGGCGGCGCC GAG GGCGCAGCAGGCGGCGAGGGCG AACGTGCCCCGGTCG MSMEG_5101 5198683 - 5199513 + | hypothetical protein MSMEG_5100 5202979 - 5199494 - | indolepyruvate ferredoxin oxidoreductase TERM 1957 5200631 - 5200645 + g 76 -7.1 -4.2461 | CAGATACAGATCGCA CTCGC CTGCT GCGAG TTTGTTGGTACCGGT MSMEG_5102 5204719 - 5203097 - | ABC transporter ATP-binding protein dapE 5205886 - 5204819 - | dipeptidase MSMEG_5104 5205921 - 5206865 + | tetrahydropicolinate succinylase MSMEG_5105 5207339 - 5206878 - | hypothetical protein TERM 1958 5207333 - 5207372 + g 75 -6.4 -4.46073 | gap 1, opp_overlap 5207333 CGAGCGCGCGCAACA CCGTCA-CATTGTGACGGC ACT GCCGTCAGAACGGTGGGGG TTTGTTGTGTTCGGC MSMEG_5106 5209097 - 5207358 - | HNH endonuclease TERM 1959 5208604 - 5208579 - G 95 -23.3 -2.72344 | opp_overlap 5208594 5208596 GCCGATGTCGAAGTA GCGGCCGCGCC GCGA GGCGCGGCCGC GGCGGAAAGAGGCCG MSMEG_5108 5209320 - 5209718 + | hypothetical protein MSMEG_5107 5210374 - 5209709 - | secreted protein MSMEG_5109 5211210 - 5210371 - | hypothetical protein TERM 1960 5211737 - 5211707 - H 80 -14.6 -3.09834 | opp_overlap 5211729 CACCTCACCACCGAA CGTCGACGGCAGGC CTG GCCCGGCGTCGTCG ATGAGCACGATGACG MSMEG_5111 5212083 - 5212454 + | hypothetical protein MSMEG_5112 5212470 - 5212793 + | hypothetical protein MSMEG_5115 5212766 - 5213179 + | hypothetical protein MSMEG_5114 5214557 - 5213151 - | acyl-CoA synthetase MSMEG_5116 5214644 - 5215138 + | hypothetical protein MSMEG_5118 5215146 - 5215685 + | nudix hydrolase MSMEG_5117 5216635 - 5215682 - | proline dehydrogenase pruA 5218265 - 5216637 - | 1-pyrroline-5-carboxylate dehydrogenase TERM 1961 5218469 - 5218515 + G 70 -12.9 -3.29544 | gap 1, overlap 5218441 5218466 5218465 GCCGCGCTGATCGAC TCCGACGACGTCCGCTTCGGTC TCGC GCCCGCGGCGGGC-TCGGCGGA TCTGTTCTTCCTCCT MSMEG_5120 5218349 - 5219926 + | hypothetical protein MSMEG_5121 5221031 - 5219928 - | N-succinyldiaminopimelate aminotransferase MSMEG_5122 5221372 - 5221049 - | ferredoxin TERM 1962 5221489 - 5221514 + H 80 -15.4 -2.80492 | overlap 5221486 GTGTGCCCTAACTTG CGCGCCGCCC AGTTAA GGGTGGCGCG TGGTTACTGATACTA MSMEG_5124 5222843 - 5224858 + | 2,4-dienoyl-CoA reductase MSMEG_5125 5225525 - 5224977 - | YceI like family protein fbiC 5228439 - 5225815 - | FO synthase TERM 1963 5229597 - 5229579 - g 88 -14.6 -3.81287 | overlap 5229592 GACACCAGCACCAAA GCACCGGT CAA ACCGGTGC GCACCATCACCAAGA MSMEG_5127 5228643 - 5229797 + | hypothetical protein MSMEG_5128 5230202 - 5229798 - | hypothetical protein MSMEG_5129 5231182 - 5230310 - | N-Acetyl-1-D-myo-Inosityl-2-amino-2-deoxy-alpha- D-glucopyranoside deacetylase MshB MSMEG_5130 5233090 - 5231207 - | extracellular solute-binding protein, family protein 5 TERM 1964 5234617 - 5234599 - g 72 -13.8 -3.14564 | CGAGGGCGCCACGAA GACCCGGC CGG GCCGGGCC GCGCTCGGTGCGCTG MSMEG_5131 5233598 - 5234785 + | hypothetical protein TERM 1965 5234795 - 5234842 + TF 90 -17.1 -3.34962 | gap 1, overlap 5234796 GACTAGGGGGGCCAA GGGCCGGTCATGC-CCGCTC AGAGGGGGA GAGCGGTGCATGGCCGGCCA TTCTCGGCTGTAGGA TERM 1966 5234796 - 5234841 + TF 91 -20.6 -2.60763 | gap 1, overlap 5234795 ACTAGGGGGGCCAAG GGCCGGTCATGC-CCGCTC AGAGGGGGA GAGCGGTGCATGGCCGGCC ATTCTCGGCTGTAGG typA 5236774 - 5234873 - | GTP-binding protein TypA/BipA MSMEG_5133 5236721 - 5236834 + | hypothetical protein MSMEG_5134 5236831 - 5236998 + | hypothetical protein MSMEG_5135 5237084 - 5237347 + | hypothetical protein MSMEG_5136 5237805 - 5237353 - | helix-hairpin-helix DNA-binding motif-containing protein narI 5238618 - 5237887 - | respiratory nitrate reductase, gamma subunit narJ 5239256 - 5238618 - | nitrate reductase molybdenum cofactor assembly chaperone narH 5240899 - 5239253 - | nitrate reductase, beta subunit MSMEG_5140 5244570 - 5240896 - | nitrate reductase, alpha subunit TERM 1967 5244302 - 5244277 - G 76 -13.9 -3.44051 | opp_overlap 5244284 5244287 CGTGTACCAGGAGAA CGCGGCGCCGC GCGG GCAGCCCCGCG GTTCGTACTCGGGAC MSMEG_5141 5245825 - 5244596 - | nitrate/nitrite transporter protein MSMEG_5142 5247265 - 5245838 - | beta-glucosidase A MSMEG_5143 5248347 - 5247286 - | HTH-type transcriptional regulator DegA MSMEG_5144 5250791 - 5248344 - | xylosidase/arabinosidase MSMEG_5145 5251100 - 5252485 + | extracellular solute-binding protein, family protein 1 MSMEG_5146 5252482 - 5253402 + | binding protein dependent transport protein TERM 1968 5253703 - 5253739 + G 100 -22.3 -3.14564 | opp_overlap 5253693 CAACAGCGTCGTCGT CGCCGCCGGGACCGTGG TGC CCACGGTCCTGCTGGCG TTCATGGCGGCGTAC MSMEG_5147 5253404 - 5254303 + | sugar ABC-transporter integral membrane protein MSMEG_5148 5254701 - 5254309 - | CTP pyrophosphohydrolase phhB 5254729 - 5255013 + | pterin-4-alpha-carbinolamine dehydratase pimE 5256124 - 5254991 - | mannosyltransferase TERM 1969 5255595 - 5255558 - G 74 -12 -3.61715 | gap 2, overlap 5255560 5255561 GACCGTCGCGAAGAA CACCGCCGCCGAGCACGC GACC GCG-GCCCAGCGGC-GCG CCCCGAGGAAGTACA TERM 1970 5255594 - 5255560 - G 74 -13.5 -3.38812 | gap 1, overlap 5255558 5255561 CCGTCGCGAAGAACA CCGCCGCCGAGCACGC GACC GCG-GCCCAGCGGCGC GCCCCGAGGAAGTAC TERM 1971 5255593 - 5255561 - G 77 -17 -2.63073 | gap 1, overlap 5255560 5255558 CGTCGCGAAGAACAC CGCCGCCGAGCACGC GACC GCG-GCCCAGCGGCG CGCCCCGAGGAAGTA MSMEG_5151 5256323 - 5256931 + | hypothetical protein MSMEG_5152 5256259 - 5256948 + | hypothetical protein MSMEG_5153 5256973 - 5257956 + | hypothetical protein TERM 1972 5258023 - 5257979 - T 100 -23 -3.67737 | opp_overlap 5257984, overlap 5257984 GAGAAAATGGGGAAA CGAAATTCCCGGTCGCTGGC GACAT GCCGGCGACCGGGAATTTTG TATGGGCTGAATCGA TERM 1973 5258018 - 5257984 - T 100 -21.5 -4.06903 | opp_overlap 5257984, overlap 5257979 AATGGGGAAACGAAA TTCCCGGTCGCTGGC GACAT GCCGGCGACCGGGAA TTTTGTATGGGCTGA TERM 1974 5257984 - 5258018 + T 100 -24.4 -4.54047 | opp_overlap 5257984 5257979 AATGGGGAAACGAAA TTCCCGGTCGCTGGCG ACA TGCCGGCGACCGGGAA TTTTGTATGGGCTGA MSMEG_5154 5258201 - 5258052 - | hypothetical protein MSMEG_5155 5258247 - 5258900 + | nitroreductase MSMEG_5156 5259500 - 5258919 - | base excision DNA repair protein, HhH-GPD family protein MSMEG_5157 5259594 - 5259890 + | hypothetical protein MSMEG_5158 5259912 - 5261111 + | sensor histidine kinase TERM 1975 5261360 - 5261413 + G 80 -17.6 -2.94099 | gap 3, opp_overlap 5261380 5261381 CCCGCGGTGGTGTTC GT-GACCGCGCACGACGAC-AAGGCCG TCG CGGCGTTCGACGTCG-GCGCGGTCGAC TATCTGCTCAAACCG MSMEG_5159 5261108 - 5261893 + | DNA-binding response regulator, putative MSMEG_5160 5261949 - 5262260 + | putative integral membrane protein MSMEG_5161 5262257 - 5263999 + | transmembrane transport protein MSMEG_5162 5264395 - 5264003 - | cinnamoyl ester hydrolase MSMEG_5163 5264488 - 5265240 + | ABC proline/glycine betaine family protein transporter, periplasmic ligand binding protein MSMEG_5164 5265330 - 5266328 + | zinc-binding alcohol dehydrogenase family protein MSMEG_5165 5266487 - 5266834 + | integral membrane protein MSMEG_5166 5266831 - 5268462 + | Na+/solute symporter TERM 1976 5268670 - 5268689 + G 77 -10.7 -3.86372 | CACCACCGTCATCTA CGCCACC TACGCC GGTGGCG TTCTGTTTGCGTTGC TERM 1977 5269203 - 5269219 + G 75 -10.1 -4.0371 | TCACGGGGATGTACA CGGCGGT CGC ACCGTCG TTTCTGTCCAACGTG MSMEG_5167 5268527 - 5269732 + | major facilitator superfamily protein MFS_1 MSMEG_5168 5269784 - 5271097 + | hypothetical protein MSMEG_5169 5271269 - 5271099 - | hypothetical protein MSMEG_5170 5271731 - 5271288 - | pyridoxamine 5'-phosphate oxidase family protein MSMEG_5171 5271798 - 5272811 + | hypothetical protein MSMEG_5172 5272831 - 5273346 + | hypothetical protein MSMEG_5173 5273370 - 5274206 + | O-methyltransferase, putative MSMEG_5174 5274575 - 5274219 - | regulatory protein GntR, HTH MSMEG_5175 5274659 - 5275381 + | NAD-dependent deacetylase MSMEG_5176 5276035 - 5275385 - | methyltransferase type 11 MSMEG_5177 5276741 - 5276022 - | regulatory protein, TetR MSMEG_5178 5279016 - 5276743 - | integral membrane protein TERM 1978 5279314 - 5279259 - g 70 -4 -4.42653 | gap 2, opp_overlap 5279307, overlap 5279309 ATTTCATGGAGAAAA CAAGCCTGTCGTCGGGCGCCACGTCG TCCGCC CGAT-CGATGACCGAC-ACAGGCCTG CTCATCCTGCGCCTG MSMEG_5179 5279234 - 5279794 + | DoxX subfamily protein, putative MSMEG_5180 5279899 - 5280030 + | hypothetical protein TERM 1979 5280048 - 5280036 - T 76 -6.2 -4.46212 | opp_overlap 5280037, overlap 5280037 5280038 CGCGGTATGAGAAAA CGCG CGCCT CGCG GCCCGACTTGGCTCA MSMEG_5181 5281532 - 5280066 - | IS1549, transposase TERM 1980 5281710 - 5281745 + r 73 -9.6 -3.84451 | opp_overlap 5281718, overlap 5281718 CTGCCTACCGCGGTA TGAGAAAACGCGCGCC TCGC GGCGCGCGTTTCCCGG TTTGAGTTTGCCCGC TERM 1981 5281718 - 5281737 + r 91 -16.4 -3.64236 | opp_overlap 5281718, overlap 5281710 CGCGGTATGAGAAAA CGCGCGCC TCGC GGCGCGCG TTTCCCGGTTTGAGT TERM 1982 5281737 - 5281718 - R 100 -16.4 -4.46212 | opp_overlap 5281710 5281718 CGCGGTATGAGAAAA CGCGCGCC TCGC GGCGCGCG TTTCCCGGTTTGAGT TERM 1983 5281789 - 5281821 + r 95 -18.5 -3.87815 | opp_overlap 5281795, overlap 5281793 CCCTGACCTGCTTTC GAATCAGTCCCTGCG CTA CGCGGGGACTGTTTC TTTCTCGGCGTCCGG TERM 1984 5281793 - 5281817 + r 100 -17.9 -4.55697 | opp_overlap 5281795, overlap 5281789 GACCTGCTTTCGAAT CAGTCCCTGCG CTA CGCGGGGACTG TTTCTTTCTCGGCGT MSMEG_5182 5282817 - 5281804 - | 2-nitropropane dioxygenase MSMEG_5183 5283595 - 5282834 - | 3-hydroxyacyl-CoA dehydrogenase TERM 1985 5283431 - 5283473 + g 78 -16.3 -3.06261 | gap 1, opp_overlap 5283443 CTCGTCGGTCACGTC GGTCG-CGACGAACTTGGCG CGAT CGCCGAGCTCGGCGACGACC TCTTCACCCTTGAGG MSMEG_5184 5284738 - 5283647 - | alpha-methylacyl-CoA racemase, putative MSMEG_5185 5284871 - 5285698 + | enoyl-CoA hydratase TERM 1986 5285721 - 5285746 + T 89 -16.3 -3.18912 | CCGGTCGCTCTCGAA CCCTGATATCG CATG CGATATCAGGG TTCGTGCATGAGTGG MSMEG_5186 5286256 - 5285867 - | HicB family protein MSMEG_5187 5286339 - 5287598 + | tetracycline-resistance determinant TetV MSMEG_5188 5288285 - 5287602 - | caax amino protease family protein TERM 1987 5287684 - 5287657 - G 72 -6.2 -4.32579 | gap 1, overlap 5287658 AGACCCCAGAAGAAA TGGGTGAGCATCG GTG CGA-GCACACCCC CGGTAACGCGGCGTT MSMEG_5189 5289418 - 5288282 - | oxidoreductase MSMEG_5190 5290024 - 5289428 - | TetR-family protein transcriptional regulator MSMEG_5192 5290103 - 5291140 + | aldo/keto reductase MSMEG_5191 5291633 - 5291112 - | siderophore binding protein MSMEG_5193 5292626 - 5291664 - | transcriptional regulator, AraC family protein MSMEG_5194 5292709 - 5294022 + | integral membrane protein MSMEG_5195 5294169 - 5294026 - | hypothetical protein MSMEG_5196 5294168 - 5294923 + | fasciclin domain-containing protein TERM 1988 5294914 - 5294925 + Tr 71 -4.4 -4.56597 | overlap 5294903 5294901 5294900 CGCGGCCGACGCCCC GATC GGCT GATC TTTTTCGCCAACAGA TERM 1989 5294935 - 5294978 + Tr 100 -23.4 -3.73224 | opp_overlap 5294939 5294941, overlap 5294937 5294942 CTGATCTTTTTCGCC AACAGAGCTGCCCCTTTTCC GAGC GGAAAAGGGGCAGTTCTGTA TTTGGTCGCGGCTAG TERM 1990 5294937 - 5294976 + Tr 100 -26 -3.45027 | opp_overlap 5294939 5294941, overlap 5294935 5294942 GATCTTTTTCGCCAA CAGAGCTGCCCCTTTTCC GAGC GGAAAAGGGGCAGTTCTG TATTTGGTCGCGGCT TERM 1991 5294974 - 5294939 - TR 100 -20.6 -3.01712 | opp_overlap 5294937 5294935 5294942, overlap 5294941 TCTTTTTCGCCAACA GAGCTGCCCCTTTTCC GAGC GGAAAAGGGGCAGTTC TGTATTTGGTCGCGG TERM 1992 5294972 - 5294941 - TR 88 -17.4 -3.06696 | opp_overlap 5294937 5294935 5294942, overlap 5294939 TTTTTCGCCAACAGA GCTGCCCCTTTTCC GAGC GGAAAAGGGGCAGT TCTGTATTTGGTCGC TERM 1993 5294942 - 5294971 + Tr 100 -20.9 -3.78419 | opp_overlap 5294941 5294939, overlap 5294937 5294935 TTTTCGCCAACAGAG CTGCCCCTTTTCC GAGC GGAAAAGGGGCAG TTCTGTATTTGGTCG MSMEG_5197 5296139 - 5294997 - | long-chain specific acyl-CoA dehydrogenase MSMEG_5198 5296939 - 5296145 - | carnitinyl-CoA dehydratase MSMEG_5199 5298093 - 5296936 - | putative acyl-CoA dehydrogenase MSMEG_5201 5298285 - 5299076 + | regulatory protein GntR, HTH MSMEG_5200 5299366 - 5299073 - | hypothetical protein MSMEG_5202 5301194 - 5299440 - | hypothetical protein MSMEG_5203 5301752 - 5301228 - | DoxX subfamily protein, putative MSMEG_5204 5302539 - 5301775 - | oxidoreductase, short chain dehydrogenase/reductase family protein TERM 1994 5302580 - 5302565 - g 84 -5.4 -5.02074 | GTACTGTTCAAAAAA TGGACC AGCA AGTCCA AAAACTCACCCCCAA TERM 1995 5302603 - 5302585 - g 77 -4.4 -4.67904 | overlap 5302589 CAGCAAGTCCAAAAA CTCACCCC CAA GGGGGCAG CGACCCGGCGGCGCA MSMEG_5206 5302564 - 5303166 + | regulatory protein MSMEG_5205 5304428 - 5303163 - | hypothetical protein TERM 1996 5303237 - 5303283 + g 72 -15 -2.87344 | CGATCGCGGATGCGG CGGTGTGCACGCTCACCGCGAC CGT GTCGCCGATGCCGTGCACGCCG TGTGTCAGGCCCATC MSMEG_5207 5305150 - 5304455 - | hypothetical protein MSMEG_5208 5305725 - 5305147 - | hypothetical protein TERM 1997 5306126 - 5306108 - g 70 -12.4 -3.38991 | opp_overlap 5306117, overlap 5306088 5306106 5306109 ACTCGTGGAAGAACA CCGGCCAG ATC CTGGCCGA TCAGGGATTTCACGT MSMEG_5209 5305945 - 5306808 + | hydrolase, alpha/beta fold family protein TERM 1998 5307154 - 5307188 + G 78 -6.5 -4.56597 | gap 2, overlap 5307154 CCGGATTGCTCGAGT CC-CGGCAGGC-CAC CGCCTAC GTGCGCCTGCTGCGG TTTTTGCCCGGGGAC MSMEG_5211 5306805 - 5309738 + | hypothetical protein MSMEG_5210 5310480 - 5309722 - | hydrolase MSMEG_5212 5310811 - 5310644 - | hypothetical protein MSMEG_5213 5310853 - 5311533 + | hypothetical protein MSMEG_5214 5311646 - 5312170 + | RNA polymerase sigma-70 factor MSMEG_5215 5312196 - 5312690 + | hypothetical protein MSMEG_5216 5313185 - 5312778 - | glyoxalase family protein MSMEG_5217 5313614 - 5313276 - | hypothetical protein MSMEG_5218 5314048 - 5313647 - | hypothetical protein MSMEG_5219 5314679 - 5314122 - | riboflavin biosynthesis protein RibD domain-containing protein MSMEG_5220 5315719 - 5314772 - | esterase/lipase/thioesterase MSMEG_5221 5316321 - 5315767 - | GCN5-related N-acetyltransferase ychF 5317424 - 5316318 - | translation-associated GTPase TERM 1999 5318279 - 5318250 - g 88 -15.7 -3.72576 | gap 1, overlap 5318220 5318222 5318254 GGGCGCCCGACCAAA CGGACGGCGCCGCC GCG GGC-GCGTCGTCCG CGCGACCCCGAACTG MSMEG_5223 5317578 - 5318684 + | hypothetical protein ispH 5319643 - 5318699 - | 4-hydroxy-3-methylbut-2-enyl diphosphate reductase MSMEG_5225 5319766 - 5320383 + | hypothetical protein TERM 2000 5321009 - 5321036 + G 74 -14.2 -3.28712 | gap 1 CGTGCTCGCGCGCGG CGGCGGCAGCGTC GAG GAC-CTGCTGCCG TTCTCCGACGAGACG xseA 5320419 - 5321633 + | exodeoxyribonuclease VII large subunit xseB 5321630 - 5321842 + | exodeoxyribonuclease VII, small subunit MSMEG_5228 5321905 - 5322975 + | 3-beta hydroxysteroid dehydrogenase/isomerase family protein MSMEG_5229 5323501 - 5322977 - | hypothetical protein TERM 2001 5323468 - 5323445 - G 70 -12.4 -3.28924 | GATGCGGTCCCACAA CGCGCGGATC GCAC GATCCGAGCG CCGGTCGAACAGCAG MSMEG_5230 5323840 - 5323505 - | hypothetical protein MSMEG_5231 5324085 - 5323876 - | hypothetical protein MSMEG_5232 5324507 - 5324361 - | hypothetical protein MSMEG_5233 5324552 - 5325631 + | RmlD substrate binding domain-containing protein MSMEG_5234 5325628 - 5326398 + | short-chain dehydrogenase/reductase SDR MSMEG_5235 5326395 - 5327228 + | short chain dehydrogenase family protein MSMEG_5237 5327291 - 5328478 + | hypothetical protein MSMEG_5236 5329280 - 5328456 - | dienelactone hydrolase family protein MSMEG_5238 5329918 - 5329295 - | hypothetical protein TERM 2002 5330114 - 5330088 - g 82 -15.1 -3.44146 | CGCGGCGACAAGGAA GGCGGCGACGG TGCGG CCGTCGACGCC ATGCGTGAGCTGGTC glpX 5329974 - 5331002 + | fructose 1,6-bisphosphatase II fumC 5331034 - 5332440 + | fumarate hydratase MSMEG_5241 5334178 - 5332463 - | GAF family protein MSMEG_5242 5335652 - 5334246 - | acyltransferase, ws/dgat/mgat subfamily protein TERM 2003 5335144 - 5335125 - G 70 -12.1 -3.35679 | opp_overlap 5335122 GGGGTTGAGCGAGAA CGGCGCC TGCCGC GGCGCCG GCGGCGGGGCGTGTG MSMEG_5243 5336092 - 5335649 - | helix-hairpin-helix DNA-binding motif-containing protein TERM 2004 5335910 - 5335952 + g 85 -17 -3.14344 | opp_overlap 5335927 5335930, overlap 5335925 GACCAGCTTGGTGCC CTCCGCGGTGCGGAACAGCA CGG TGCGGTTCTGCACCACGAAG TTGATCGGGAAGATG MSMEG_5244 5336799 - 5336164 - | two component transcriptional regulatory protein devr TERM 2005 5336203 - 5336251 + g 78 -14 -3.65201 | overlap 5336229 5336230 CGCGAACACCGCGGC CTGCGTG-CGACGCTCCATGCCGA GCT TCGCCA-GGAGCCTCGACACGTAG TTCTTGACGGTCTTC MSMEG_5245 5337652 - 5336810 - | universal stress protein family protein MSMEG_5246 5338643 - 5337654 - | hypothetical protein TERM 2006 5338717 - 5338731 + r 71 -10 -3.61398 | GCGACACCGGTCTCA CGGTGT CAC ACACCG TTGTTCGCGCCACCC MSMEG_5247 5340076 - 5338763 - | PhoH family protein TERM 2007 5340145 - 5340160 + r 74 -10.4 -3.78775 | GTGGACACTGCGGCA GGACCG GGGC CGGTCC TTTCGTGATCGAAAC MSMEG_5248 5341208 - 5340381 - | acyl-[ACP] desaturase glyA 5342759 - 5341287 - | serine hydroxymethyltransferase TERM 2008 5341863 - 5341887 + g 70 -12.7 -3.38272 | GGTCGCGAGCACCAT GCCGCCGCGCG GTC CGCGCAGCGAC TTGTGCGTGGTCGTG MSMEG_5250 5344104 - 5342839 - | CalR9 protein TERM 2009 5344296 - 5344276 - g 77 -11.2 -3.86897 | GGTATGGGCGAGAAA CTCGACCT GCTGG AGGTCGAG GAGGTATACCTGCCG coaA 5344147 - 5345085 + | pantothenate kinase MSMEG_5251 5346574 - 5345057 - | hypothetical protein MSMEG_5253 5347081 - 5346674 - | hypothetical protein MSMEG_5254 5347541 - 5347134 - | hypothetical protein MSMEG_5255 5349066 - 5347702 - | hypothetical protein TERM 2010 5348305 - 5348248 - G 100 -21.4 -3.65046 | GGGTGACCGGAAGAA CGCGA-GGCGGTCGAAGATGCCGGCCAG CGGG CCGGCCAGCACCT-CGACGGCCACCGCG ACCGCGAGGCTGGTG uppS 5349877 - 5349086 - | undecaprenyl diphosphate synthase MSMEG_5257 5349936 - 5350706 + | channel protein, hemolysin III family protein TERM 2011 5350807 - 5350755 - T 81 -11.3 -4.09685 | gap 1, overlap 5350756 CGGCACGCCGCAAAA CCTCAGCAGTACGCGCACGCTCGC GGTGAG ACGAACGTGCGCGT-CGGTCGAGA GGTCCGCTGAAAGAT MSMEG_5258 5351199 - 5350825 - | steroid delta-isomerase MSMEG_5259 5353184 - 5351211 - | hypothetical protein TERM 2012 5352653 - 5352606 - G 82 -17.6 -3.09516 | opp_overlap 5352572 GGGCGCACCACCGAA CCCGCCGTGGCGCTTGTCCTCG TCAC CGAGCACGGACGCCACGGCGTG ATCGCACATCTCGGC MSMEG_5260 5353482 - 5353204 - | hypothetical protein MSMEG_5261 5354345 - 5353479 - | mycothiol conjugate amidase Mca MSMEG_5262 5354473 - 5354901 + | hypothetical protein greA 5355102 - 5355596 + | transcription elongation factor GreA MSMEG_5264 5355634 - 5356314 + | hypothetical protein MSMEG_5265 5357477 - 5356323 - | cystathionine gamma-synthase TERM 2013 5358262 - 5358280 + G 74 -12.4 -3.59087 | overlap 5358272 TGTCGGGCCCGTTGG CGTGCCTC TCC GAGGCGCG TTTCGGCATCGTGTT TERM 2014 5358677 - 5358698 + G 73 -10.1 -3.90112 | opp_overlap 5358664, overlap 5358678 5358681 GATGGTCATCGCCCA GGCGCTGAC CGGT GTCAGCGCA TTTCGTTGAACCCCG MSMEG_5267 5357517 - 5358707 + | glutaryl-CoA dehydrogenase MSMEG_5266 5359428 - 5358691 - | RDD family protein TERM 2015 5359490 - 5359451 - RH 100 -21.5 -3.60627 | opp_overlap 5359449 5359457 5359458 TGATCCCACGCGAAA CGGCGCCCACGCCGC GTGACTTTTT GCAGCGTGGGCGCCG TGACGAGACGCCGGA MSMEG_5268 5360649 - 5359516 - | hypothetical protein TERM 2016 5360572 - 5360623 + Gg 78 -14.2 -3.61398 | overlap 5360573 CGGGGGCGGCGGGTA GCCGCCGTCGGGCGGCGGGGGC GGCGGGTA GCCGCCGTCGGGCGGCGGCGGG TTGTTGCCCGGAGGC TERM 2017 5360573 - 5360622 + Gg 78 -17.7 -2.76696 | overlap 5360572 GGGGGCGGCGGGTAG CCGCCGTCGGGCGGCGGGGGC GGCGGGTA GCCGCCGTCGGGCGGCGGCGG GTTGTTGCCCGGAGG MSMEG_5269 5360191 - 5360676 + | hypothetical protein MSMEG_5270 5362348 - 5360957 - | cystathionine beta-synthase MSMEG_5271 5363424 - 5362378 - | esterase MSMEG_5272 5363628 - 5364581 + | hypothetical protein MSMEG_5273 5364613 - 5365830 + | acetyl-CoA acetyltransferase purT 5365924 - 5367126 + | phosphoribosylglycinamide formyltransferase 2 TERM 2018 5367190 - 5367157 - T 100 -19.7 -3.29461 | opp_overlap 5367163, overlap 5367163 GAACCGCGGCCACAA GAAAAAGGCGCCCGC TGTC GCGGACGCCTTTCTC GGGTGTGACTGCTAG TERM 2019 5367184 - 5367163 - T 100 -15.1 -5.18726 | opp_overlap 5367163, overlap 5367157 CGGCCACAAGAAAAA GGCGCCCGC TGTC GCGGACGCC TTTCTCGGGTGTGAC TERM 2020 5367163 - 5367184 + T 86 -12.9 -3.91144 | opp_overlap 5367163 5367157 CGGCCACAAGAAAAA GGCGCCCGC TGTC GCGGACGCC TTTCTCGGGTGTGAC MSMEG_5275 5368038 - 5367202 - | permease of the major facilitator superfamily protein TERM 2021 5368250 - 5368225 - g 71 -2.5 -4.53705 | overlap 5368226 5368228 AATCGTGACAGAAAA CGAGGACATCC TAGT AAATGTCCGCA ACGGTGTCGGCATCC MSMEG_5276 5368214 - 5369260 + | enoyl-CoA hydratase MSMEG_5277 5369260 - 5370036 + | enoyl-CoA hydratase MSMEG_5278 5370047 - 5371777 + | membrane-spanning protein MSMEG_5279 5372156 - 5371788 - | hypothetical protein MSMEG_5280 5372706 - 5372158 - | cysteine dioxygenase type I superfamily protein MSMEG_5281 5372831 - 5373301 + | LpqV protein MSMEG_5282 5373962 - 5373318 - | transcriptional regulator TERM 2022 5374375 - 5374388 + G 72 -5.9 -4.2828 | GCGTGCTGCGTCAGC CCGCG CGTG TGCGG TTTTCGTCGCTGACC TERM 2023 5375123 - 5375095 - g 71 -11 -3.53811 | gap 1 TCGAGGTGCGGGAAA GTCGCG-ATCGCG TCGT CGCGGTGCGCGAC GAGGCGCAGTGGCCG MSMEG_5283 5374065 - 5375750 + | hydrolase, CocE/NonD family protein MSMEG_5284 5375747 - 5376769 + | patatin MSMEG_5285 5377642 - 5376770 - | phospholipase, patatin family protein MSMEG_5287 5377718 - 5378761 + | dehydrogenase dapB 5379807 - 5378758 - | dihydrodipicolinate reductase N-terminus domain-containing protein MSMEG_5288 5382042 - 5379874 - | putative serine/threonine protein kinase MSMEG_5289 5382010 - 5382222 + | hypothetical protein MSMEG_5290 5382453 - 5382716 + | hypothetical protein MSMEG_5291 5384423 - 5382807 - | acyl-CoA synthetase MSMEG_5292 5384572 - 5384877 + | hypothetical protein MSMEG_5293 5384778 - 5384888 + | hypothetical protein MSMEG_5294 5385097 - 5385258 + | hypothetical protein MSMEG_5295 5386811 - 5385285 - | acyl-CoA synthetase TERM 2024 5386179 - 5386208 + g 86 -19.3 -3.14132 | opp_overlap 5386173 5386174 GTGGAAGAACGGCAT CACGGCGACGGTG GCGT CACCGTCGCCGAG TTCGTAGGCCGCACA MSMEG_5296 5386935 - 5386813 - | hypothetical protein MSMEG_5297 5386954 - 5388684 + | putative oxalyl-CoA decarboxylase MSMEG_5298 5389361 - 5389047 - | hypothetical protein MSMEG_5299 5388829 - 5389104 + | hypothetical protein TERM 2025 5389255 - 5389276 + gT 72 -10.9 -3.53012 | gap 1, opp_overlap 5389239, overlap 5389243 CCCTCGGCTTCGAGT CGGCCGATCG TGT CGATC-GCCG TTTCGGCCGAAGCCG MSMEG_5300 5390179 - 5389451 - | short-chain type dehydrogenase/reductase MSMEG_5301 5390260 - 5390850 + | transcriptional regulator TERM 2026 5390905 - 5390876 - T 88 -17.9 -3.05343 | GGCAGACGCGGAAGA GGCCCGGCCGT GAGCGGGT ACGGCCGGGCC TCTGGCCCATCAGGC MSMEG_5302 5392324 - 5390951 - | aerobic C4-dicarboxylate transport protein TERM 2027 5391028 - 5391056 + g 74 -13.1 -3.57039 | overlap 5391032 TCAGTTCGTCGAACG GGTCGTCGCCG CCGAGCA CGGCGTCGACC TTGTCCTTGTCGATG TERM 2028 5393528 - 5393544 + G 78 -13.7 -3.65991 | overlap 5393532 TCCCGAGACCGTGTT CCTGCGC CTG GCGCAGG TTCTGTTCCACCCGT putP 5392572 - 5394098 + | sodium/proline symporter MSMEG_5304 5394189 - 5395772 + | two-component sensor kinase MSMEG_5306 5395769 - 5396461 + | two-component system response regulator MSMEG_5305 5397849 - 5396446 - | choline dehydrogenase MSMEG_5307 5397936 - 5398649 + | TetR-family protein transcriptional regulator MSMEG_5308 5399762 - 5398656 - | hypothetical protein MSMEG_5309 5400870 - 5400142 - | hypothetical protein MSMEG_5310 5401676 - 5400867 - | SAM-dependent methyltransferase MSMEG_5311 5402452 - 5401673 - | hypothetical protein MSMEG_5312 5403156 - 5402449 - | ABC-type multidrug transport system ATPase component MSMEG_5313 5403605 - 5403153 - | hypothetical protein MSMEG_5314 5404646 - 5403732 - | hypothetical protein TERM 2029 5403834 - 5403812 - G 70 -8.4 -3.82824 | CACGATCGACAACAA CCTGCCGC CGCCCGT GCAGCAGG CCCGCGCTCACGCGG MSMEG_5315 5405610 - 5404783 - | gp35 protein MSMEG_5317 5405691 - 5406437 + | hypothetical protein MSMEG_5316 5407207 - 5406434 - | glutamine ABC transporter, ATP-binding protein TERM 2030 5406566 - 5406536 - G 72 -13.2 -3.14132 | opp_overlap 5406532, overlap 5406538 GCCGTCGGCCATGAA CATCACGCGCGAGG CGA CCTCGCGTGCGAAG CCCATCTCGTGTGTG TERM 2031 5406564 - 5406538 - G 72 -14.4 -3.13403 | opp_overlap 5406532, overlap 5406536 CGTCGGCCATGAACA TCACGCGCGAGG CGA CCTCGCGTGCGA AGCCCATCTCGTGTG MSMEG_5318 5408610 - 5407204 - | glutamine ABC transporter, permease/substrate-binding protein MSMEG_5319 5409213 - 5408767 - | alkylhydroperoxidase AhpD core MSMEG_5320 5409212 - 5409379 + | hypothetical protein MSMEG_5321 5409376 - 5409696 + | hypothetical protein TERM 2032 5409739 - 5409716 - T 100 -19.6 -4.48987 | opp_overlap 5409707 GGTGCACAACGAAAA TGGGCGCCGG CGGC CCGGCGCCCA CCTCGGCGTCTACTC MSMEG_5322 5411089 - 5409749 - | hypothetical protein TERM 2033 5410016 - 5410064 + g 74 -16.5 -2.78216 | overlap 5410012 GTCGGCCACCGGCTT GGCCTCGCTCGCGGCCGACGCCG ACG CGGCGTCAGTCGCCGACGGTGCC TGCTTGGTCGAGGTG TERM 2034 5411129 - 5411144 + r 71 -4 -4.56597 | opp_overlap 5411115 5411114 CCCCCGGGCGGAAAA CTTACT CCCA AGTAGG TTTTTCGCAAAGGAA MSMEG_5323 5412371 - 5411574 - | hypothetical protein TERM 2035 5412506 - 5412460 - RH 93 -18.2 -3.28924 | gap 1, opp_overlap 5412452, overlap 5412464 5412468 GATCGGCGGGGAGAA CG-GATGAATCCGGTGTCCCC TGTTCG GGGGACACCGGATTCACGACG GACGCAGGAACTGAA TERM 2036 5412501 - 5412464 - RH 100 -24.4 -2.59431 | opp_overlap 5412452, overlap 5412460 5412468 GGCGGGGAGAACGGA TGAATCCGGTGTCCCC TGTTCG GGGGACACCGGATTCA CGACGGACGCAGGAA TERM 2037 5412497 - 5412468 - RH 100 -19.4 -3.23711 | opp_overlap 5412452, overlap 5412464 5412460 GGGAGAACGGATGAA TCCGGTGTCCCC TGTTCG GGGGACACCGGA TTCACGACGGACGCA MSMEG_5324 5413248 - 5412499 - | hypothetical protein MSMEG_5325 5413632 - 5413309 - | hypothetical protein MSMEG_5326 5413234 - 5413683 + | hypothetical protein MSMEG_5327 5413873 - 5414196 + | hypothetical protein MSMEG_5328 5414528 - 5414827 + | hypothetical protein MSMEG_5329 5415626 - 5414886 - | hypothetical protein MSMEG_5330 5416961 - 5415960 - | SIS domain-containing protein TERM 2038 5416905 - 5416922 + g 71 -10.5 -3.75629 | GAGGCTGGTCGCGAG CCGGCTG AGGA CGGCCGG TTTGCGTTCCAGATC TERM 2039 5418298 - 5418345 + r 71 -12.6 -3.18582 | gap 1 CACCGCGTCGGTCAG CTCGGCATCGGCGAACCCGTAGG TGT CCAGCCGGAT-GCCGAAGCCGAG TTCGTCGATGCGCTG MSMEG_5332 5420084 - 5419476 - | transcriptional regulator, TetR family protein MSMEG_5333 5420232 - 5420573 + | hypothetical protein TERM 2040 5420653 - 5420607 - T 75 -12.5 -3.54424 | opp_overlap 5420607 TGCCACGCCGCGAAA CTGTAGTTGTCGAGCGG TTGTTCGAGTAGT GCGCTCGACAACTACAG TTTCGGTGGAGCGCT TERM 2041 5420607 - 5420653 + T 87 -14.7 -3.64822 | gap 1, opp_overlap 5420607 TGCCACGCCGCGAAA CTGTAGTTGTCGAGCG-GTTGT TCGA GTAGTGCGCTCGACAACTACAG TTTCGGTGGAGCGCT MSMEG_5334 5421282 - 5420674 - | hypothetical protein TERM 2042 5421409 - 5421372 - R 93 -13.6 -4.07885 | gap 2 GAGCGTTCGGCAAAA CACCGATGGGCCGGGATC CGCG GATCCCGGCC-AT-GGCG TCGTGCGATCTAGGA MSMEG_5335 5422666 - 5421419 - | formamidase MSMEG_5336 5423324 - 5422683 - | amidate substrates transporter protein TERM 2043 5423528 - 5423497 - R 71 -12.2 -3.19192 | gap 1, overlap 5423492 5423499 CCCTACCGAACCGAA GACCCGGCGCGCCGG CGT CCGGCACTCCGGA-C AGGTCGCCGCCGCAT TERM 2044 5423527 - 5423499 - R 82 -15.9 -3.1585 | overlap 5423492 5423497 CTACCGAACCGAAGA CCCGGCGCGCCGG CGT CCGGCACTCCGGA CAGGTCGCCGCCGCA TERM 2045 5423675 - 5423691 + r 75 -15.1 -2.71731 | opp_overlap 5423666 AGTCAAGGGTGAACG CCCGCGC CGG GCGCGGG TGGTTACGAAGTCAA MSMEG_5338 5424123 - 5423695 - | regulatory protein, MarR MSMEG_5339 5424226 - 5425299 + | nitrile hydratase regulator1 MSMEG_5340 5425912 - 5425307 - | TetR-family protein transcriptional regulator MSMEG_5341 5426007 - 5427203 + | dipeptidyl aminopeptidase/acylaminoacyl peptidase MSMEG_5342 5427540 - 5427211 - | hypothetical protein MSMEG_5343 5427890 - 5427543 - | hypothetical protein MSMEG_5344 5428183 - 5427953 - | hypothetical protein TERM 2046 5428097 - 5428055 - G 74 -15.5 -3.05596 | gap 1 GATGGCCGCAGCGAA CGCCGCGAGCGATGCAGGCG TCGT CCACTGCG-CGCTCGCGGCG GCCGCGAGCAAGAGC MSMEG_5345 5428272 - 5429072 + | glycosyl hydrolases family protein 16 MSMEG_5346 5429868 - 5429236 - | TetR-family protein transcriptional regulator MSMEG_5347 5430067 - 5431389 + | transporter, major facilitator family protein MSMEG_5348 5431409 - 5433004 + | medium-chain fatty acid-CoA ligase MSMEG_5349 5433042 - 5433650 + | hypothetical protein MSMEG_5350 5435251 - 5433830 - | PPE family protein, putative MSMEG_5351 5435558 - 5435376 - | hypothetical protein MSMEG_5352 5435666 - 5435977 + | hypothetical protein MSMEG_5353 5436746 - 5435982 - | putative methyltransferase MSMEG_5354 5436911 - 5437936 + | O-methyltransferase, family protein 2 TERM 2047 5437934 - 5437981 + T 74 -12.7 -3.28924 | gap 2, opp_overlap 5437945, overlap 5437937 GAGACCGTCGCGGTC TGACGACGGAAGGCCGCCCTACC CGCA GGTAGGGCGGCCA-CCG-CGCGA TTGTCAGGCAGGATC TERM 2048 5437937 - 5437980 + T 74 -15.3 -2.57211 | opp_overlap 5437945, overlap 5437934 ACCGTCGCGGTCTGA CGACG-GAAGGCCGCCCTACC CGCA GGTAGGGCGGCCACCGCG-CG ATTGTCAGGCAGGAT TERM 2049 5437972 - 5437945 - T 100 -22.8 -3.09516 | opp_overlap 5437937 5437934 GGTCTGACGACGGAA GGCCGCCCTACC CGCA GGTAGGGCGGCC ACCGCGCGATTGTCA MSMEG_5355 5438560 - 5437985 - | hypothetical protein MSMEG_5356 5439021 - 5438797 - | hypothetical protein MSMEG_5357 5439081 - 5439218 + | hypothetical protein MSMEG_5358 5440604 - 5439246 - | acetamidase/formamidase family protein cynS 5441167 - 5440718 - | cyanate hydratase MSMEG_5360 5442024 - 5441164 - | formate/nitrate transporter MSMEG_5361 5442812 - 5442132 - | hypothetical protein TERM 2050 5442402 - 5442455 + Gg 79 -15.2 -3.34013 | gap 2, overlap 5442406 CCGATCTCCCGCGAG CAGGCCGACCAGGCCGGCCGCGCCGC GCTG GCGGCCGGGTCGGC--GGTCGGTCGG TTCCTTGCCGAGGTG TERM 2051 5442516 - 5442540 + Gg 79 -7.7 -4.4261 | overlap 5442518 TGCGGGCGCGCGGTC GAGGCAGTGCC GGT GGCGCTGCGAC TTTTCGTCTTCGCGG MSMEG_5362 5442231 - 5442995 + | hypothetical protein MSMEG_5363 5442992 - 5443366 + | hypothetical protein MSMEG_5364 5444469 - 5443516 - | amidohydrolase 2 MSMEG_5365 5444881 - 5444594 - | RNA polymerase sigma-70 factor MSMEG_5366 5444953 - 5445444 + | hypothetical protein ehuB 5446146 - 5447081 + | ectoine/hydroxyectoine ABC transporter solute-binding protein ehuC 5447086 - 5447784 + | ectoine/hydroxyectoine ABC transporter, permease protein EhuC ehuD 5447781 - 5448449 + | ectoine/hydroxyectoine ABC transporter, permease protein EhuD ehuA 5448466 - 5449230 + | ectoine/hydroxyectoine ABC transporter, ATP-binding protein MSMEG_5372 5451729 - 5449234 - | sensor protein KdpD TERM 2052 5450254 - 5450303 + g 78 -12.1 -3.72576 | gap 1, opp_overlap 5450248, overlap 5450238 5450256 GGCGAACAACGCCAG TAGTTCGGCGTT-TTGCGACGCGC GCC GCGCGGCGCGGGAGTGCCGGGCTG TTTGGTCGACCAGGC TERM 2053 5450256 - 5450301 + g 73 -12.5 -3.44848 | gap 1, opp_overlap 5450248, overlap 5450238 5450254 CGAACAACGCCAGTA GTTCGGCGTT-TTGCGACGCGC GCC GCGCGGCGCGGGAGTGCCGGGC TGTTTGGTCGACCAG MSMEG_5373 5452871 - 5451846 - | nitrilase 2 MSMEG_5374 5454350 - 5452917 - | glutamate--ammonia ligase MSMEG_5375 5455191 - 5454493 - | GntR-family protein transcriptional regulator MSMEG_5376 5455684 - 5455289 - | hypothetical protein MSMEG_5377 5456711 - 5456127 - | hypothetical protein MSMEG_5378 5456430 - 5457752 + | IS1096, tnpA protein MSMEG_5379 5458461 - 5457760 - | IS1096, tnpR protein TERM 2054 5460956 - 5461000 + r 80 -17.1 -2.52464 | opp_overlap 5460930, overlap 5460967 GGCAGCGGCGGCACC GGCGGCAGCGGCACGGTTGGC GGC GCCAACGGTGTTGGTGGCGCC TCCGTTACCGCGGCG TERM 2055 5461308 - 5461264 - R 74 -12.8 -3.24188 | gap 2, overlap 5461257 5461265 CCACAGCACCACCAA CTCGGCCGGTGACGGCGGCGAC GGC GGCGCCGCGGTCAACG-CCG-G TACGGGCTCAGCATT MSMEG_5381 5462167 - 5461316 - | hypothetical protein TERM 2056 5461427 - 5461369 - G 74 -13.2 -3.26947 | gap 3, overlap 5461357 5461371 5461372 CAACGGTGACACCAA CACGGCCGGCGCCGGTGACGGTGGTGCCG GCGG CGACGCCACCATCACCGGCGC-GTC-G-A GCGCGACCTCGACGG TERM 2057 5461426 - 5461371 - G 90 -20.5 -3.1978 | gap 2, overlap 5461357 5461369 5461372 ACGGTGACACCAACA CGGCCGGCGCCGGTGACGGTGGTGCCG GCGG CGACGCCACCATCACCGGCGC-GTC-G AGCGCGACCTCGACG TERM 2058 5461426 - 5461372 - G 82 -20.7 -2.51547 | gap 1, overlap 5461357 5461371 5461369 CGGTGACACCAACAC GGCCGGCGCCGGTGACGGTGGTGCCG GCGG CGACGCCACCATCACCGGCGC-GTCG AGCGCGACCTCGACG TERM 2059 5461808 - 5461750 - G 80 -16.4 -3.23216 | overlap 5461752 5461755 CGCCACCATCACCAA CACCACGTCGACGGCCGCCGCCACCGGC GGC GCCGGCGGTGGCGGCGGCCGCCGCCACC GGCGGCGCCGGCGGC TERM 2060 5461809 - 5461752 - G 100 -30.5 -3.18023 | overlap 5461750 5461755 CCACCATCACCAACA CCACGTCGACGGCCGCCGCCACCGGCG GCGC CGGCGGTGGCGGCGGCCGCCGCCACCG GCGGCGCCGGCGGCA TERM 2061 5461806 - 5461755 - G 100 -33 -2.78495 | overlap 5461750 5461752 CCATCACCAACACCA CGTCGACGGCCGCCGCCACCGGCG GCGC CGGCGGTGGCGGCGGCCGCCGCCA CCGGCGGCGCCGGCG MSMEG_5383 5463546 - 5462776 - | dehydrogenase/reductase SDR family protein member 4 MSMEG_5384 5463671 - 5463546 - | hypothetical protein MSMEG_5385 5465023 - 5463644 - | metallo-beta-lactamase family protein MSMEG_5386 5465174 - 5465761 + | rhodanese-like domain-containing protein TERM 2062 5466360 - 5466399 + G 78 -12.1 -3.72576 | gap 1, overlap 5466362 5466392 TTCAGATCGACTGGG CA-CTGGCCGCCGCCGTG ACCGG CGCGGCTGTGGCCGGCTG TTTGATCGGCACCCG MSMEG_5387 5465768 - 5466640 + | hypothetical protein MSMEG_5388 5466725 - 5466973 + | hypothetical protein MSMEG_5390 5466991 - 5467392 + | hypothetical protein MSMEG_5389 5468102 - 5467389 - | LysA protein MSMEG_5391 5468304 - 5468513 + | hypothetical protein TERM 2063 5469751 - 5469733 - g 81 -7.4 -4.57569 | GTATCTCGGTAAAAA GATCACAC CAC GTGAGATC AAGCTCGCTGCAAGC kdpA 5468513 - 5470183 + | potassium-transporting ATPase subunit A kdpB 5470183 - 5472330 + | potassium-transporting ATPase subunit B MSMEG_5394 5472332 - 5473198 + | potassium-transporting ATPase C chain MSMEG_5395 5473206 - 5475725 + | sensor protein KdpD MSMEG_5396 5475722 - 5476414 + | KDP operon transcriptional regulatory protein KdpE TERM 2064 5476474 - 5476433 - T 78 -15.5 -2.78384 | gap 1, opp_overlap 5476433 5476440, overlap 5476435 5476440 5476462 CCCTCGCCGAGCAGA CATAAAACTGCCCA-TTTCG GCG CGAAAATGAGCAGTTTTACG TCTGCTCGGCAGAGG TERM 2065 5476472 - 5476435 - T 79 -14.5 -2.94099 | gap 1, opp_overlap 5476433 5476440, overlap 5476433 5476440 5476462 CTCGCCGAGCAGACA TAAAACTGCCCA-TTTCG GCG CGAAAATGAGCAGTTTTA CGTCTGCTCGGCAGA TERM 2066 5476467 - 5476440 - T 91 -10 -4.62984 | gap 1, opp_overlap 5476433 5476440, overlap 5476435 5476433 5476462 CGAGCAGACATAAAA CTGCCCA-TTTCG GCG CGAAAATGAGCAG TTTTACGTCTGCTCG TERM 2067 5476440 - 5476467 + T 75 -7.8 -4.24948 | gap 1, opp_overlap 5476440 5476435 5476433 5476462, overlap 5476433 CGAGCAGACATAAAA CTGCCCA-TTTCG GCG CGAAAATGAGCAG TTTTACGTCTGCTCG recQ 5477615 - 5476470 - | ATP-dependent DNA helicase RecQ MSMEG_5398 5479006 - 5477639 - | ISMsm4, transposase MSMEG_5399 5479549 - 5479025 - | ATP-dependent DNA helicase RecQ MSMEG_5400 5481138 - 5479546 - | dehydrogenase MSMEG_5401 5481614 - 5481135 - | hypothetical protein MSMEG_5402 5482420 - 5481632 - | dehydrogenase DhgA MSMEG_5404 5482552 - 5484423 + | propionate--CoA ligase cadA 5486341 - 5484398 - | cadmium-translocating P-type ATPase MSMEG_5405 5486438 - 5486791 + | transcriptional regulator, ArsR family protein MSMEG_5406 5487002 - 5487118 + | hypothetical protein TERM 2068 5487164 - 5487195 + F 100 -13.9 -4.54727 | gap 1 TCATCCCATACCTCT GAGCCC-ATCGATC ACGCC GATCGATCGGGCTC TTTTGGTTTCACGCC MSMEG_5407 5487241 - 5487942 + | integral membrane protein TERM 2069 5488649 - 5488619 - g 73 -10.4 -3.90112 | opp_overlap 5488619 5488618 5488621, overlap 5488622 TCCGCGCCAACGAAA CAGTGTGGCTGGAT CTC ACCCGGCCACAATG GTTCCTGCTGCCCAC lgt 5487967 - 5488752 + | prolipoprotein diacylglyceryl transferase MSMEG_5409 5489073 - 5489366 + | hypothetical protein TERM 2070 5490559 - 5490579 + G 72 -15.5 -2.83822 | overlap 5490537 5490556 CAGGAATCGCTGCTC GGACTGCTC TCC GAGCAGTCC TCGTTGTCCCATCCG MSMEG_5410 5489368 - 5490936 + | radical SAM domain-containing protein MSMEG_5411 5490933 - 5491193 + | hypothetical protein TERM 2071 5492101 - 5492066 - g 71 -11 -3.57144 | overlap 5492096 CGGCGGAGGCCGAAA CCGAGGCGACCGCGAC CGAC GCCGAGACCACCCCGG TGACCGAAGAGACCC MSMEG_5412 5491336 - 5492376 + | immunogenic protein MPT63 TERM 2072 5492429 - 5492390 - T 100 -32.4 -3.92373 | opp_overlap 5492390 GATCTGATTTACAAA GCGAACGGCCGGAAGTGG GAAA CCACTTCCGGCCGTTCGC TTTCGAGTCTCAGCT TERM 2073 5492390 - 5492429 + T 100 -32.4 -3.63805 | opp_overlap 5492390 GATCTGATTTACAAA GCGAACGGCCGGAAGTGG GAAA CCACTTCCGGCCGTTCGC TTTCGAGTCTCAGCT MSMEG_5413 5493389 - 5492439 - | exopolyphosphatase TERM 2074 5493128 - 5493105 - G 70 -9.4 -3.8211 | overlap 5493085 GGTCATCGAGAAGAA CTCGTCGCGG TTAC CCGCGTCGCG CGCGGCCGACGTGGC MSMEG_5414 5494549 - 5493380 - | septum formation initiator subfamily protein, putative eno 5495866 - 5494583 - | phosphopyruvate hydratase MSMEG_5416 5496605 - 5495931 - | LpqU protein MSMEG_5417 5496611 - 5496763 + | hypothetical protein MSMEG_5418 5496846 - 5497778 + | iron permease FTR1 TERM 2075 5498785 - 5498807 + F 71 -13.4 -3.02511 | CAAGCGTGTCGACCA GCGCTTCGCC GAT GTCGAAGCGC TGTTGGAGAAGTACC MSMEG_5420 5498980 - 5500266 + | Tat-translocated enzyme MSMEG_5421 5501007 - 5503937 + | hypothetical protein TERM 2076 5503983 - 5503948 - T 100 -19 -3.73953 | overlap 5503949 ACTAGGGGGAGGAAA GGGTGTGCCCCCTCTC GCAA GGGAGGGGGCACACCT ATGCCTGAGGGTCCG TERM 2077 5503982 - 5503949 - T 100 -22.5 -2.84051 | overlap 5503948 CTAGGGGGAGGAAAG GGTGTGCCCCCTCTC GCAA GGGAGGGGGCACACC TATGCCTGAGGGTCC MSMEG_5422 5505033 - 5504059 - | nucleoside triphosphate pyrophosphohydrolase mfd 5508677 - 5505030 - | transcription-repair coupling factor TERM 2078 5505509 - 5505546 + g 90 -16.3 -3.71552 | overlap 5505512 CGATGTACTCGGGTG GCAGGTGCGCGTCGACC GGAA GGTCGATGCGCACATCC TTCTGTTCCTGCGGT TERM 2079 5505512 - 5505543 + g 75 -16.6 -2.95751 | overlap 5505509 TGTACTCGGGTGGCA GGTGCGCGTCGACC GGAA GGTCGATGCGCACA TCCTTCTGTTCCTGC TERM 2080 5505845 - 5505813 - G 70 -12.8 -3.32022 | gap 1 CGGCGGATACAGGAA GTAGG-CGTAGCCAC GCTC GCGGCTACGGCCCAC GCGGCCGCGCAACTG TERM 2081 5506680 - 5506697 + g 81 -12.7 -3.95073 | opp_overlap 5506679 GTCGCCGCAGATCAC CCGGTCC ATCG GGACCGG TTTCTCCATGTCGGA TERM 2082 5507859 - 5507877 + g 79 -14.6 -3.37796 | overlap 5507850 GGCCAGCATGTCCGG CACCGTGC CGG GCACGGTG TTCTCCGTCGTGGGG MSMEG_5424 5509340 - 5508726 - | transcriptional regulator, TetR family protein glmU 5509565 - 5511013 + | UDP-N-acetylglucosamine pyrophosphorylase MSMEG_5427 5511115 - 5512095 + | ribose-phosphate pyrophosphokinase TERM 2083 5512177 - 5512132 - g 71 -9.8 -3.70068 | gap 2, opp_overlap 5512133, overlap 5512173 TACCACAACCCCAAA TGCTCGACGTCGCGCAAGACGC TGGA GC-TGTTGCGCGACAACG-GCA TCGAGCCGGAGATCA arsC 5512096 - 5512443 + | arsenate reductase MSMEG_5429 5512458 - 5513096 + | LpqT protein MSMEG_5430 5513126 - 5513998 + | retinol dehydrogenase 13 TERM 2084 5514490 - 5514472 - g 75 -10.3 -4.08216 | overlap 5514473 GCAGCGCGGCGAAAA GGTCACC GTCGA GGTGACC GTCCTCGTCGAGGGT MSMEG_5431 5514158 - 5514805 + | 50S ribosomal protein L25/general stress protein Ctc TERM 2085 5515232 - 5515261 + G 72 -13.6 -3.21099 | opp_overlap 5515252 CGCATCGGTGTGGGA CGCCCGCCGGG-CC GCAA GGACCCGGCGG-CG TTCGTGCTCGAGAAC pth 5514818 - 5515393 + | peptidyl-tRNA hydrolase MSMEG_5433 5516618 - 5515581 - | 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein MSMEG_5434 5516811 - 5517245 + | hypothetical protein MSMEG_5435 5518981 - 5517344 - | acyl-CoA synthetase ispE 5520370 - 5519402 - | 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase MSMEG_5437 5520425 - 5521288 + | serine/threonine-protein kinase PknB TERM 2086 5521367 - 5521309 - T 85 -12 -4.07885 | gap 4, opp_overlap 5521326, overlap 5521312 5521317 GAGTCGTCCGGAAAA CGACGAAACCGGCGAAATGGTCGCCGACGG ACA CCGTCGGGCACCATTTCGCCGGT--C-TC- GGCGTCAGGGCGCTT TERM 2087 5521368 - 5521312 - T 100 -34.7 -3.08032 | opp_overlap 5521326, overlap 5521309 5521317 TCGTCCGGAAAACGA CGAAACCGGCGAAATGGTCGCCGACGG ACA CCGTCGGGCACCATTTCGCCGGTCTCG GCGTCAGGGCGCTTC TERM 2088 5521363 - 5521317 - T 100 -29.6 -3.93057 | opp_overlap 5521326, overlap 5521309 5521312 CGGAAAACGACGAAA CCGGCGAAATGGTCGCCGACGG ACA CCGTCGGGCACCATTTCGCCGG TCTCGGCGTCAGGGC TERM 2089 5521326 - 5521354 + T 81 -13.1 -3.56643 | opp_overlap 5521317 5521309 5521312 ACGAAACCGGCGAAA TGGTCGCCGACGG ACA CCGTCGGGCACCA TTTCGCCGGTCTCGG ksgA 5522283 - 5521390 - | dimethyladenosine transferase MSMEG_5439 5523446 - 5522319 - | resuscitation-promoting factor RpfB TERM 2090 5522865 - 5522889 + g 76 -7.7 -4.25104 | GTCGACCACCGGCGA CGACGCGGCGG GGA CCACCTTGTCG TTTTGCTCAAGCGGC TERM 2091 5523005 - 5523059 + g 79 -18.5 -2.60808 | gap 1, overlap 5523028 TCTTGGGGCTGACGA CCGGCAGCGCCATTCCG-GCCAGCGG GACA CGGCTGCCGCGGGATGCCGCAGCCGG TGCCTTGTCCGTCAT MSMEG_5440 5524393 - 5523539 - | deoxyribonuclease metG 5524418 - 5525965 + | methionyl-tRNA synthetase MSMEG_5442 5525967 - 5527316 + | glutamate dehydrogenase MSMEG_5443 5527410 - 5528603 + | dehydrogenase MSMEG_5444 5528600 - 5529505 + | RNA polymerase sigma-70 factor protein pabB 5529526 - 5530779 + | para-aminobenzoate synthase component I MSMEG_5445 5531585 - 5530749 - | hypothetical protein MSMEG_5447 5531610 - 5533160 + | dolichyl-phosphate-mannose-protein mannosyltransferase arcA 5535589 - 5534381 - | arginine deiminase MSMEG_5449 5533473 - 5534486 + | hypothetical protein soxR 5535642 - 5536067 + | redox-sensitive transcriptional activator SoxR MSMEG_5451 5536101 - 5536697 + | alkylated DNA repair protein MSMEG_5452 5537388 - 5536711 - | hypothetical protein MSMEG_5453 5538080 - 5537418 - | hypothetical protein MSMEG_5454 5538195 - 5539166 + | choloylglycine hydrolase, putative MSMEG_5455 5540630 - 5539167 - | PE family protein TERM 2092 5539237 - 5539259 + g 95 -19.2 -3.55622 | TTCCCAGCCGCCGGG CCGGCGTCGT GCG ACGACGCCGG TTTCGGGCGCTTGGG MSMEG_5456 5540925 - 5541641 + | MK35 lipoprotein TERM 2093 5541679 - 5541666 - T 74 -2.3 -4.83615 | overlap 5541667 5541668 CAGGCCCGAGAAAAA GCCGA GGCC TCCGC GATCTGCTCGGCCGT MSMEG_5457 5542498 - 5541650 - | shikimate 5-dehydrogenase MSMEG_5458 5543496 - 5542495 - | cyclic nucleotide-binding protein MSMEG_5459 5543693 - 5543529 - | hypothetical protein MSMEG_5460 5544271 - 5543717 - | hypothetical protein MSMEG_5461 5544540 - 5544268 - | hypothetical protein rarD 5545249 - 5546187 + | RarD protein MSMEG_5463 5546238 - 5547116 + | 6-phosphogluconate dehydrogenase, NAD-binding MSMEG_5464 5547113 - 5548270 + | integral membrane transport protein TERM 2094 5548580 - 5548621 + G 70 -12.1 -3.28712 | CTGGACGACGACGCA CTGCGCCGCACCGTCGAGG TGAA TCTCGTTGCGGCGGCGCGG TTGTGCCGGGAGGCC MSMEG_5466 5548286 - 5549011 + | oxidoreductase MSMEG_5465 5549820 - 5548969 - | transcriptional regulator, AraC family protein TERM 2095 5550053 - 5550015 - R 100 -17.7 -4.25056 | gap 1, opp_overlap 5550019 5550022, overlap 5550022 GACTCGATCAAGAAA CACAAA-AGGCAGGTCAG TCAC CTGACCTGCCTGCTTGTG GAGCTAAGGGGAATC TERM 2096 5550045 - 5550022 - R 100 -16.8 -4.89838 | opp_overlap 5550019 5550022, overlap 5550015 TCAAGAAACACAAAA GGCAGGTCAG TCAC CTGACCTGCC TGCTTGTGGAGCTAA TERM 2097 5550022 - 5550045 + r 84 -16.8 -2.83271 | opp_overlap 5550022 5550015, overlap 5550019 TCAAGAAACACAAAA GGCAGGTCAG TCAC CTGACCTGCC TGCTTGTGGAGCTAA MSMEG_5468 5551345 - 5550191 - | hypothetical protein MSMEG_5469 5552210 - 5551581 - | acetyltransferase, GNAT family protein MSMEG_5470 5553486 - 5552239 - | molybdopterin biosynthesis protein MoeA 1 galU 5554439 - 5553543 - | UTP-glucose-1-phosphate uridylyltransferase TERM 2098 5554904 - 5554934 + G 75 -10.2 -4.07568 | CCTGGCGGTCGACCG GTCCGGGGCGCGCC TGG GTCGCGGCGCGGGC TTTTACGACCGGACG MSMEG_5472 5554506 - 5555090 + | 5,10-methenyltetrahydrofolate synthetase MSMEG_5473 5555211 - 5557037 + | transporter MSMEG_5474 5557034 - 5557930 + | universal stress protein family protein MSMEG_5475 5558698 - 5557934 - | acetate operon repressor gcl 5560602 - 5558806 - | glyoxylate carboligase MSMEG_5477 5561513 - 5560599 - | 2-hydroxy-3-oxopropionate reductase TERM 2099 5561368 - 5561421 + g 79 -15.1 -3.33261 | gap 1, overlap 5561369 GCGTCGGCGATCGAG TCGGCCGCGGTGCCGCCCGCGGCGAC CAG GTCGGCG-GTGCGGTGCGGCGACCGG TTGTAGCCCTTGACC TERM 2100 5561369 - 5561420 + g 73 -16.4 -2.59742 | gap 1, overlap 5561368 CGTCGGCGATCGAGT CGGCCGCGGTGCCGCCCGCGGCGAC CAG GTCGGCG-GTGCGGTGCGGCGACCG GTTGTAGCCCTTGAC MSMEG_5478 5562377 - 5561544 - | hydroxypyruvate isomerase, putative TERM 2101 5561847 - 5561891 + g 100 -20.2 -3.54424 | GGCGGTGCCGTCGGA CTGCGCCG-CGACGCGGTCG ATCACGG CGACCGCGTCGGCGGCG-AG TTTCAGCGGGTACAG MSMEG_5479 5562618 - 5562938 + | type I antifreeze protein TERM 2102 5562947 - 5562972 + F 100 -13.3 -4.63527 | overlap 5562917 5562915 CAGCTAGACGCTGCC GCCGGCCTG GTTATCCA CAGGCCGGC TTTTTGCGGTCATCA TERM 2103 5563408 - 5563433 + G 72 -13.3 -3.21126 | gap 1, overlap 5563409 CCGACGCGCGGATCG TGCCGCTGTCCC TCG GGGAC-GCGGCG TTGCTGGATGTCATT MSMEG_5481 5563017 - 5563667 + | hypothetical protein MSMEG_5480 5563867 - 5563661 - | hypothetical protein mscL 5564013 - 5564483 + | large-conductance mechanosensitive channel TERM 2104 5564557 - 5564499 - T 84 -9 -4.58395 | gap 3, opp_overlap 5564516 5564545 5564546 5564549, overlap 5564512 GTCACCTCTGAAAAA CCGAAGACAGAAACAGAGCAGCCCCCGGA GAAA TCCGGGGGCTGCTTTGT--C-GCCTGCAA GGCGTCAGTTCATGT TERM 2105 5564547 - 5564512 - T 100 -23.4 -4.22414 | opp_overlap 5564516 5564545 5564546, overlap 5564499 AACCGAAGACAGAAA CAGAGCAGCCCCCGGA GAAA TCCGGGGGCTGCTTTG TCGCCTGCAAGGCGT TERM 2106 5564516 - 5564543 + T 100 -22.8 -3.89346 | opp_overlap 5564512 5564499 GAAGACAGAAACAGA GCAGCCCCCGGA GAAA TCCGGGGGCTGC TTTGTCGCCTGCAAG MSMEG_5483 5565209 - 5564562 - | porin MSMEG_5484 5565760 - 5565602 - | hypothetical protein TERM 2107 5565883 - 5565913 + r 91 -16.8 -3.53366 | opp_overlap 5565889 TCTTCGCCAAACATA CGAAAACGGCGGCC GAT GGCCGCCGAGTTCG TTGTCGTTAGATCTC TERM 2108 5565907 - 5565889 - R 100 -17.4 -4.46493 | opp_overlap 5565883 CCAAACATACGAAAA CGGCGGCC GAT GGCCGCCG AGTTCGTTGTCGTTA MSMEG_5485 5566456 - 5565920 - | molybdopterin biosynthesis protein MSMEG_5486 5567841 - 5566507 - | peptidase S1 and S6, chymotrypsin/Hap MSMEG_5487 5569535 - 5568015 - | sensor histidine kinase MSMEG_5488 5570190 - 5569498 - | DNA-binding response regulator TERM 2109 5570288 - 5570345 + r 84 -13.8 -3.58533 | opp_overlap 5570306, overlap 5570306 5570341 TGCGATGAGACCTGA CCCGGAGCA-CACGAAAAAGCGCTATCA CAAG TGATAGCGCTTTTT-GTGGTGTTGCGCG TTTCAGCGCTTGTCG TERM 2110 5570327 - 5570306 - R 100 -13.1 -4.82667 | opp_overlap 5570288 5570306 GGAGCACACGAAAAA GCGCTATCA CAAG TGATAGCGC TTTTTGTGGTGTTGC TERM 2111 5570306 - 5570327 + r 100 -13.1 -4.98436 | opp_overlap 5570306, overlap 5570288 GGAGCACACGAAAAA GCGCTATCA CAAG TGATAGCGC TTTTTGTGGTGTTGC rpmF 5570521 - 5570348 - | 50S ribosomal protein L32 TERM 2112 5570696 - 5570679 - H 80 -14.1 -3.30771 | TGACAGGCGGCACAA CCGCGGC CCGC GCCGCGG TCCGTCACAGAAATC MSMEG_5490 5570784 - 5572490 + | hypothetical protein MSMEG_5491 5572487 - 5573635 + | putative acyl-CoA dehydrogenase MSMEG_5492 5573632 - 5575227 + | acetyl-CoA carboxylase carboxyltransferase TERM 2113 5575549 - 5575517 - g 72 -14.7 -2.91322 | overlap 5575514 ACATCGCGCAAATCA TCGCCGCGGCGCAGG CAT CCGGCGCCGACGCGA TCCATCCCGGCTACG TERM 2114 5577189 - 5577147 - g 77 -15.7 -3.16564 | gap 1, opp_overlap 5577164 GCTGGAGGCCATGAA GATGGAGCACACCGTGGCCG CGCC CAGCGACGGTGTGCT-CACC GAACTCAATGTCGAA MSMEG_5493 5575327 - 5577273 + | acetyl-/propionyl-coenzyme A carboxylase alpha chain MSMEG_5494 5577270 - 5578430 + | acyl-CoA dehydrogenase fadE12 MSMEG_5495 5578430 - 5579197 + | enoyl-CoA hydratase TERM 2115 5580345 - 5580312 - g 73 -9.5 -3.93782 | gap 1, opp_overlap 5580332, overlap 5580328 GCATCGAACACGAAA GCGCCCGTGACACAAG GAT CTCG-GACACGGCCGC CGGCGGGTACGCCCA MSMEG_5496 5579234 - 5580490 + | MscS mechanosensitive ion channel MSMEG_5497 5580542 - 5580670 + | hypothetical protein MSMEG_5498 5581037 - 5580675 - | hypothetical protein MSMEG_5499 5581405 - 5581091 - | hypothetical protein TERM 2116 5581649 - 5581634 - RH 71 -7.6 -4.10552 | opp_overlap 5581634 GCCCAGCAAACGAAA TGGTAC CGGA GTACCA TTTGATCTTGATGCT TERM 2117 5581634 - 5581649 + rH 70 -7.6 -3.95424 | opp_overlap 5581634 GCCCAGCAAACGAAA TGGTAC CGGA GTACCA TTTGATCTTGATGCT MSMEG_5500 5582015 - 5581863 - | hypothetical protein TERM 2118 5582481 - 5582440 - gH 82 -4.4 -5.02074 | gap 1, opp_overlap 5582444 5582451 5582455, overlap 5582444 5582447 GCATCGTCGAAAAAA TAATCGACACGGCACCGGT GCTGA ACCAGCGGCGTG-CGTTCA TCTTCTCCGAAAGTC MSMEG_5501 5582007 - 5584286 + | hypothetical protein TERM 2119 5584309 - 5584347 + FH 100 -18.3 -4.18018 | gap 1, opp_overlap 5584299, overlap 5584313 ACACACCCACCATCG GGAGCCGGTGTCCGTCTC ACCC GAGACGGACACCG-CTAC TTTTGCGTCGCCACG TERM 2120 5584313 - 5584344 + FH 89 -18.8 -3.11208 | overlap 5584309 ACCCACCATCGGGAG CCGGTGTCCGTCTC ACCC GAGACGGACACCGC TACTTTTGCGTCGCC MSMEG_5502 5584716 - 5586893 + | hypothetical protein TERM 2121 5588097 - 5588110 + G 75 -5.9 -4.42386 | CATCGTCACCTCGGA CGGGG AGTA CTCCG TTTTCTCGGTCGACG MSMEG_5503 5587465 - 5588505 + | hypothetical protein MSMEG_5504 5588558 - 5589319 + | hypothetical protein MSMEG_5505 5589415 - 5589999 + | hypothetical protein MSMEG_5506 5590582 - 5590070 - | hypothetical protein TERM 2122 5590905 - 5590869 - R 100 -28.2 -4.21936 | opp_overlap 5590858 5590874 5590903 TTGACAATGCGAAAA CACAACGGCCCCCTCC TTTTT GGAGGGGGCCGTTGTG ATGCGGAGGTATTAC TERM 2123 5590874 - 5590900 + r 100 -20.9 -3.40522 | opp_overlap 5590869, overlap 5590858 AATGCGAAAACACAA CGGCCCCCTCC TTTTT GGAGGGGGCCG TTGTGATGCGGAGGT MSMEG_5507 5592249 - 5590921 - | hypothetical protein TERM 2124 5591719 - 5591705 - G 73 -7 -4.15044 | overlap 5591706 CCGCCCTCGAAGAAA TCGGCG ACG CGCCGC TCGAGCGTGAGCCGC TERM 2125 5592477 - 5592449 - R 70 -11 -3.36878 | opp_overlap 5592446 5592470 TGCATCCAGTGATAA CCGCCCACTAAC GAAAG GTGAGTGGGCAG CCACTTTGTTACGAC TERM 2126 5592887 - 5592901 + r 72 -8.6 -4.08394 | CACCCTGAGAGCAGG CTGAGA GAT TCTCAG TTTTCGCCGGACTCT MSMEG_5508 5594662 - 5593079 - | alkaline phosphatase MSMEG_5509 5594766 - 5595632 + | hypothetical protein TERM 2127 5595641 - 5595686 + T 71 -9.7 -3.72576 | gap 1, opp_overlap 5595641 5595642 5595651, overlap 5595642 5595645 GATCTAGCCTCGAAA TCGACGTAAACGTCGCT-CGCC CGT GGCGTAGCGACAGTTACGTCAC TTTCGTGGACGCCAC TERM 2128 5595686 - 5595641 - T 81 -14.1 -3.55761 | gap 1, opp_overlap 5595641 5595642 5595645, overlap 5595642 5595651 GATCTAGCCTCGAAA TCGACGTAAACGTCGCT-CGCC CGT GGCGTAGCGACAGTTACGTCAC TTTCGTGGACGCCAC TERM 2129 5595685 - 5595642 - T 84 -17.6 -2.73243 | gap 1, opp_overlap 5595641 5595642 5595645, overlap 5595641 5595651 ATCTAGCCTCGAAAT CGACGTAAACGTCGCT-CGCC CGT GGCGTAGCGACAGTTACGTCA CTTTCGTGGACGCCA TERM 2130 5595676 - 5595651 - T 80 -11.9 -3.70076 | gap 1, opp_overlap 5595645 5595642 5595641, overlap 5595642 5595641 CGAAATCGACGTAAA CGTCGCT-CGCC CGT GGCGTAGCGACA GTTACGTCACTTTCG MSMEG_5511 5598653 - 5596653 - | von Willebrand factor, type A TERM 2131 5597405 - 5597460 + g 85 -18.8 -3.02144 | gap 1, opp_overlap 5597459 GGGTCGCACCCGTCA GCTCGCCGGCCGCCCCGGCGCGGCGCG TGT CGCGCT-CACCGTGGCGCCCGGAAAGC TGTTGCGCCACATCA TERM 2132 5597569 - 5597554 - G 78 -10.4 -4.16016 | CCACGGTCCAAGAAA CCCTGG TTCA CCAGGG CACGCTCCAGTTCGG MSMEG_5512 5600031 - 5598646 - | magnesium chelatase TERM 2133 5601020 - 5600978 - g 71 -11.9 -3.65046 | gap 1, overlap 5600979 CGCCGAGGCCAACAA GGGCGACGAGTCGGCCG-CA CCCG TGACAGCCGCCCCGCCGCCG GTGATCACGCCGCCG TERM 2134 5601019 - 5600979 - g 70 -15.4 -2.78813 | gap 1, overlap 5600978 GCCGAGGCCAACAAG GGCGACGAGTCGGCCG-CA CCCG TGACAGCCGCCCCGCCGCC GGTGATCACGCCGCC MSMEG_5513 5600142 - 5601998 + | serine/threonine-protein kinase PknE MSMEG_5514 5602658 - 5602005 - | hypothetical protein purH 5604275 - 5602692 - | bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase TERM 2135 5604113 - 5604148 + g 78 -6.6 -4.62069 | opp_overlap 5604100 AACCGGTGACCTGTT CCACCGGCGTCACCGG AACA CCGGCGGCGGCAATGG TTTTTGCGGTCGAGC purN 5604897 - 5604286 - | phosphoribosylglycinamide formyltransferase MSMEG_5517 5606389 - 5604926 - | hypothetical protein TERM 2136 5605782 - 5605758 - G 75 -9.4 -4.16842 | gap 1 GTGATCGCGAACAAA TCGTGCA-TGG TGCC CCAGTGCACGA CGAGCGATCCGGCCG MSMEG_5518 5607349 - 5606450 - | antigen 34 kDa MSMEG_5519 5608626 - 5607496 - | monooxygenase MSMEG_5520 5608770 - 5609618 + | hypothetical protein TERM 2137 5609605 - 5609639 + T 77 -13.4 -3.41745 | TGGCGGGCAAGCTCT CCGCGCTGGTCTAGCG TTA CGCCAGTACGGCGCGG TTGCTCTTCTCGCCG MSMEG_5521 5611144 - 5609621 - | acetyl-CoA acetyltransferase TERM 2138 5611323 - 5611281 - H 100 -21.7 -3.53444 | gap 1 GCATCCCTTGCCAAA CCTGTCACTTAGTGACA-CT GTGG AGCTGTCACTAAGTGACAGG AGGTGAGCATCAGCG MSMEG_5522 5611326 - 5611943 + | TetR family transcriptional regulator protein MSMEG_5523 5612016 - 5613869 + | peptidase TERM 2139 5613920 - 5613880 - T 100 -22.2 -3.54424 | gap 1, opp_overlap 5613886, overlap 5613886 TTTGATTCCGCCAAA CACAAAGCTGCCCCTTTTC CGAC GAAAAGGGGCAGCTT-GTG CGAAAACTCGCGGAG TERM 2140 5613886 - 5613915 + T 100 -20.9 -3.29144 | opp_overlap 5613880 5613886 TCCGCCAAACACAAA GCTGCCCCTTTTC CGAC GAAAAGGGGCAGC TTGTGCGAAAACTCG TERM 2141 5613915 - 5613886 - T 100 -20.9 -4.32857 | opp_overlap 5613886, overlap 5613880 TCCGCCAAACACAAA GCTGCCCCTTTTC CGAC GAAAAGGGGCAGC TTGTGCGAAAACTCG sucD 5614840 - 5613938 - | succinyl-CoA synthetase subunit alpha sucC 5616016 - 5614853 - | succinyl-CoA synthetase subunit beta TERM 2142 5616772 - 5616723 - g 74 -12.7 -3.59979 | opp_overlap 5616755, overlap 5616725 5616745 GGCGCTCACCGCAAA GAGACCACCGGCGCGCTCAAGAG CCGG CTGATGATCGCGGCGGTGGCCGC GGGCGCCACCGCCGC TERM 2143 5616770 - 5616725 - g 74 -13.9 -3.38046 | opp_overlap 5616755, overlap 5616723 5616745 CGCTCACCGCAAAGA GACCACCGGCGCGCTCAAGAG CCGG CTGATGATCGCGGCGGTGGCC GCGGGCGCCACCGCC MSMEG_5526 5616372 - 5617415 + | peptidoglycan-binding LysM TERM 2144 5617663 - 5617615 - g 72 -8.8 -4.05714 | ACGCCGAACCACAAA CCAGCCTCATCGGGGCGCAG-AGC GAC GCTTCCG-GGCCCGAGGACGCCGG AGAGGCGGCCACCGC MSMEG_5527 5617416 - 5618099 + | hypothetical protein MSMEG_5528 5618255 - 5618136 - | hypothetical protein MSMEG_5529 5618274 - 5619242 + | hypothetical protein MSMEG_5530 5619221 - 5620093 + | putative aliphatic sulfonates transport permease protein SsuC MSMEG_5531 5620090 - 5620818 + | ABC transporter ATP-binding protein TERM 2145 5622122 - 5622093 - g 78 -9.9 -4.14739 | gap 1 GCAGTTACCTGAAAA CCGCGGAGCGCCTC GCC GAGTCGG-CCGCGG CACTCGAAACGGTGT MSMEG_5532 5620808 - 5622400 + | FAD dependent oxidoreductase MSMEG_5533 5622397 - 5622798 + | 4Fe-4S ferredoxin, iron-sulfur binding pcrA 5625153 - 5622802 - | ATP-dependent DNA helicase PcrA TERM 2146 5623803 - 5623841 + gF 71 -13.1 -3.04144 | gap 2, overlap 5623830 CGGCGTACACCGCGA CG-CACGCCTCGGCA-CGG TCG CCGATGCCGCGGCGCGGCG TGTTGAGGATGCGCC TERM 2147 5625299 - 5625333 + GH 78 -14.3 -3.22618 | gap 1, overlap 5625297 5625302 GCTGCCTTCCCCTTC CCAGCCCCGCGGTCCG CATC CGGATC-CGGGGCTCG TCTCTTGTGTGAGGC TERM 2148 5625302 - 5625330 + GH 77 -14.6 -2.79983 | gap 1, overlap 5625299 5625297 GCCTTCCCCTTCCCA GCCCCGCGGTCCG CATC CGGATC-CGGGGC TCGTCTCTTGTGTGA MSMEG_5535 5625064 - 5625345 + | hypothetical protein MSMEG_5536 5625390 - 5625656 + | chorismate mutase MSMEG_5537 5627759 - 5625750 - | integral membrane protein TERM 2149 5627403 - 5627391 - G 73 -10.5 -3.8211 | overlap 5627392 GGCCACCCAGAAGAA CGCCG CGA CGGCG TCGTCGCGCAGCGAG MSMEG_5539 5627890 - 5628903 + | hypothetical protein MSMEG_5538 5630341 - 5628893 - | [NADP+] succinate-semialdehyde dehydrogenase TERM 2150 5629284 - 5629228 - G 79 -11.4 -4.08216 | gap 2 GCACGTCGGCCAAAA CGGTCGCGG-GGTAGAAGTTGC-CCGGG CCG CCCGGTGCGACGCCGCCGACCGCGACCG TCGCGCCGCGTGACA TERM 2151 5630568 - 5630550 - g 74 -13.8 -3.29947 | CATCGACTACAGCAA GCACCGCG TCA CGCGGCGC ACCCTGGACCTGCTC pgi 5630392 - 5632041 + | glucose-6-phosphate isomerase MSMEG_5540 5632613 - 5632038 - | hypothetical protein TERM 2152 5632176 - 5632119 - G 80 -16.1 -3.21099 | opp_overlap 5632130, overlap 5632120 GCTGCCGATCATCAA GGCCGCCAAGGCCATCAGCGCACCGGC ATAG GCCAGGTCGCGGATGGTCTTGGCGTCG GCGCCGGTCAGCTGC TERM 2153 5632175 - 5632120 - G 82 -19.6 -2.52516 | opp_overlap 5632130, overlap 5632119 CTGCCGATCATCAAG GCCGCCAAGGCCATCAGCGCACCGGC ATAG GCCAGGTCGCGGATGGTCTTGGCGTC GGCGCCGGTCAGCTG MSMEG_5542 5632887 - 5632606 - | transcriptional regulator, HTH_3 family protein TERM 2154 5632928 - 5632901 - R 88 -17.2 -3.07935 | opp_overlap 5632893, overlap 5632903 5632905 ACCGGACTCATGCAA CACATTGTTGGG AAAA CCCAACAATGTG TCAACATGATCTATG TERM 2155 5632926 - 5632903 - R 76 -14 -3.09878 | opp_overlap 5632893, overlap 5632901 5632905 CGGACTCATGCAACA CATTGTTGGG AAAA CCCAACAATG TGTCAACATGATCTA MSMEG_5543 5633326 - 5632985 - | hypothetical protein MSMEG_5544 5634195 - 5633446 - | short chain dehydrogenase MSMEG_5545 5635106 - 5634240 - | formamidopyrimidine-DNA glycosylase MSMEG_5547 5635137 - 5636897 + | hypothetical protein MSMEG_5546 5637251 - 5636862 - | membrane spanning protein cobF 5637998 - 5637258 - | precorrin 6A synthase MSMEG_5549 5638116 - 5639345 + | hypothetical protein MSMEG_5551 5640458 - 5641219 + | stas domain-containing protein cheR 5641267 - 5643117 + | CheR methyltransferase SAM binding domain-containing protein MSMEG_5552 5643251 - 5643114 - | hypothetical protein MSMEG_5554 5644194 - 5643478 - | ANTAR domain-containing protein TERM 2156 5645423 - 5645452 + G 72 -14.3 -3.15544 | overlap 5645415 GTGTTCGCACTGGCG CTCGGTGGTTTCG GCAT CGGGACCGCCGAG TTCGTCGCGATGGGC MSMEG_5556 5645336 - 5646550 + | MFS permease MSMEG_5557 5647120 - 5646557 - | hypothetical protein MSMEG_5558 5647334 - 5647645 + | hypothetical protein TERM 2157 5647716 - 5647757 + F 100 -24.7 -5.03994 | opp_overlap 5647721 5647724, overlap 5647721 TGACAGTAAATGACG CCAAACAATCGGCCGCACA ATGT TGTGCGGCCGATTGTTTTG TTTTTCTATGTACCG TERM 2158 5647752 - 5647721 - f 100 -23.2 -3.65353 | opp_overlap 5647716 5647721, overlap 5647724 GTAAATGACGCCAAA CAATCGGCCGCACA ATGT TGTGCGGCCGATTG TTTTGTTTTTCTATG TERM 2159 5647721 - 5647752 + F 100 -23.2 -5.38839 | opp_overlap 5647721 5647724, overlap 5647716 GTAAATGACGCCAAA CAATCGGCCGCACA ATGT TGTGCGGCCGATTG TTTTGTTTTTCTATG TERM 2160 5647749 - 5647724 - f 100 -19.1 -3.95036 | opp_overlap 5647721 5647716, overlap 5647721 AATGACGCCAAACAA TCGGCCGCACA ATGT TGTGCGGCCGA TTGTTTTGTTTTTCT TERM 2161 5648974 - 5649020 + G 70 -12 -3.28712 | overlap 5648975 CCGGTTCGGAGACCT ACCCGCTGGCGGTGCGTCCGGC TGG GACGGCCGCACAGTCGGCGGCC TTGTGGGGCACCAAC MSMEG_5559 5647818 - 5649233 + | metabolite/sugar transport protein MSMEG_5560 5649256 - 5649882 + | hypothetical protein rnhA 5649967 - 5650446 + | RNase H MSMEG_5561 5650957 - 5650412 - | HPP family protein MSMEG_5563 5652212 - 5651232 - | AraC-family protein transcriptional regulator MSMEG_5564 5652298 - 5653074 + | NAD(P)H dehydrogenase, quinone family protein MSMEG_5565 5653701 - 5653075 - | hypothetical protein MSMEG_5566 5654224 - 5653799 - | transcriptional regulator MSMEG_5567 5655027 - 5654425 - | transcriptional regulator, TetR family protein TERM 2162 5655102 - 5655048 - H 100 -19.3 -3.1876 | AAGTCTACTTATTAA CGGTGCGCAGCGTCTCGGAAAGCGC GTACA GTGGTTTACGAGACGCAACGCACCG AAAATAAGGAGGCAA MSMEG_5568 5655119 - 5655880 + | clavaldehyde dehydrogenase MSMEG_5569 5655917 - 5656684 + | clavaldehyde dehydrogenase MSMEG_5570 5659091 - 5656824 - | ATP-dependent DNA ligase MSMEG_5571 5660218 - 5659133 - | ABC transporter ATP-binding protein MSMEG_5572 5661112 - 5660234 - | sugar ABC transporter permease protein MSMEG_5573 5662071 - 5661109 - | sugar ABC transporter permease protein MSMEG_5574 5663411 - 5662068 - | substrate binding protein MSMEG_5575 5664351 - 5663425 - | repressor TERM 2163 5664088 - 5664061 - G 72 -13.4 -3.14344 | gap 1, opp_overlap 5664069, overlap 5664063 GATGCGGCGCATCAA CAGCGCCGCGCCG GCC CGGC-CGGCGTTG GTCGCGACGACGGCC TERM 2164 5664069 - 5664085 + g 77 -15.1 -3.14132 | opp_overlap 5664061 5664063 GCATCAACAGCGCCG CGCCGGC CCG GCCGGCG TTGGTCGCGACGACG MSMEG_5576 5664415 - 5665851 + | D-mannonate oxidoreductase MSMEG_5577 5665848 - 5666768 + | fructokinase MSMEG_5578 5668283 - 5666805 - | hypothetical protein MSMEG_5579 5668813 - 5668343 - | MarR-family protein transcriptional regulator TERM 2165 5668526 - 5668491 - G 74 -14.1 -3.29511 | opp_overlap 5668491 TTCAGCCGGCGACAA CCGGCA-GGGGTCAGCG TCAC CG-TGACCCCGCGCCGG TCCTTCGAACTGACG TERM 2166 5669896 - 5669875 - g 72 -4.3 -4.58283 | gap 1 CAAGCCCGCCAAAAA GGCC-CCCGC GAA GAAGGCGGCC GCCAAGAAATCCACG MSMEG_5580 5668970 - 5669956 + | Ku protein MSMEG_5581 5670690 - 5669968 - | hypothetical protein MSMEG_5582 5671227 - 5670763 - | hypothetical protein MSMEG_5583 5673175 - 5671280 - | HNH endonuclease TERM 2167 5673220 - 5673208 - H 72 -6.9 -4.22346 | overlap 5673201 5673209 GAAACTCACCGAAAA GCCCG GCT CAGGC TGCTAGCGTGACCGC MSMEG_5584 5673254 - 5674048 + | short chain dehydrogenase MSMEG_5586 5674061 - 5675137 + | hypothetical protein MSMEG_5585 5675636 - 5675106 - | hypothetical protein MSMEG_5587 5675160 - 5675426 + | hypothetical protein MSMEG_5588 5675545 - 5675724 + | hypothetical protein MSMEG_5589 5675819 - 5677042 + | manganese transport protein MntH MSMEG_5591 5677043 - 5678101 + | hypothetical protein MSMEG_5590 5679185 - 5678088 - | carboxylate-amine ligase MSMEG_5592 5679244 - 5680065 + | hypothetical protein MSMEG_5593 5682029 - 5680074 - | pyruvate dehydrogenase TERM 2168 5681805 - 5681824 + g 72 -4.2 -4.58466 | gap 1, opp_overlap 5681806, overlap 5681806 CGGGTCGAAGTCGAA ACCG-TGCC ACG GGCAACGGA TTTTGTCGTTCTCGA MSMEG_5594 5683654 - 5682026 - | ferredoxin-dependent glutamate synthase MSMEG_5595 5684138 - 5683665 - | MarR-family protein transcriptional regulator TERM 2169 5684327 - 5684337 + H 74 -2.4 -4.73388 | AAACTACTGCGTGAA CCCG TTG CGGA TTTTTCATACCAATT MSMEG_5596 5684407 - 5685162 + | oxidoreductase MSMEG_5597 5685226 - 5685846 + | transcriptional regulator, TetR family protein MSMEG_5599 5686182 - 5686048 - | hypothetical protein MSMEG_5600 5686847 - 5687998 + | hypothetical protein MSMEG_5601 5688013 - 5688570 + | hypothetical protein MSMEG_5602 5688973 - 5689389 + | hypothetical protein MSMEG_5603 5689444 - 5689782 + | transcriptional regulator, ArsR family protein MSMEG_5604 5689743 - 5690408 + | integral membrane protein MSMEG_5605 5690437 - 5691825 + | cytochrome bd ubiquinol oxidase, subunit I TERM 2170 5691886 - 5691907 + G 81 -12.9 -3.91144 | TCTACGCGCTGTTCG CCGGCGCCG ACTT CGGCTCCGG TTTCTACGATCTCAC MSMEG_5606 5691822 - 5692820 + | cytochrome bd-I oxidase subunit II TERM 2171 5693057 - 5693046 - f 79 -5.8 -4.60073 | CACACAATGACAAAA CCTG TTTT CAGG AACAAGAAGAAAAGC MSMEG_5607 5693137 - 5693385 + | hypothetical protein TERM 2172 5693402 - 5693434 + F 100 -20 -4.72272 | gap 1, opp_overlap 5693376 5693397 CCGCAGATGAGCTGT GCCGTGGCGGGGATC TCCG GATCCCCGCCA-GGC TTTTTCATGCCACGC TERM 2173 5693905 - 5693848 - g 74 -14.2 -3.25192 | gap 2, overlap 5693846 5693849 TGGAACTGGAGAAGA CCGTGCCCGGTGACGACGCCGCGGCG AACCTGGG CACCGCGGCGTGG--ACCGGCCACGA AGGCGCCGACGCCAC MSMEG_5608 5693487 - 5694701 + | acetyl-CoA acetyltransferase MSMEG_5609 5694705 - 5696228 + | carotenoid oxygenase MSMEG_5610 5696228 - 5697178 + | putative transcriptional regulator family protein MSMEG_5611 5697272 - 5697730 + | spore protein MSMEG_5612 5698330 - 5697737 - | amino-acid acetyltransferase MSMEG_5613 5698731 - 5698339 - | transmembrane protein TERM 2174 5698405 - 5698381 - G 84 -9.9 -4.48987 | CGCCCACAACGAAAA CAGCGCGGCGA GGA TCGCCAGGCCG CCGCCGGTGTACAGA MSMEG_5615 5698778 - 5699224 + | hypothetical protein MSMEG_5614 5699942 - 5699214 - | hypothetical protein MSMEG_5616 5700727 - 5699957 - | glyoxalase/bleomycin resistance protein/dioxygenase TERM 2175 5700398 - 5700409 + g 81 -7.2 -4.57073 | opp_overlap 5700397, overlap 5700381 GGCGTCGGACATCAT GGCC ATGC GGCC TTTTTCGGGCACGTC MSMEG_5617 5701302 - 5700826 - | immunogenic protein MPT63 MSMEG_5618 5702439 - 5701411 - | acyl-CoA dehydrogenase MSMEG_5619 5703611 - 5702436 - | acyl-CoA dehydrogenase domain-containing protein MSMEG_5620 5704387 - 5703608 - | enoyl-CoA hydratase MSMEG_5621 5705304 - 5704384 - | putative acyl-CoA dehydrogenase MSMEG_5622 5706458 - 5705301 - | putative acyl-CoA dehydrogenase MSMEG_5623 5707621 - 5706470 - | L-carnitine dehydratase/bile acid-inducible protein F MSMEG_5624 5708538 - 5707618 - | oxidoreductase, short chain dehydrogenase/reductase family protein MSMEG_5625 5710393 - 5708555 - | cyclododecanone monooxygenase MSMEG_5626 5711562 - 5710390 - | luciferase MSMEG_5627 5712947 - 5711559 - | Rieske (2Fe-2S) domain-containing protein MSMEG_5628 5713826 - 5712981 - | oxidoreductase, short chain dehydrogenase/reductase family protein MSMEG_5629 5713967 - 5715571 + | hypothetical protein MSMEG_5630 5715578 - 5716315 + | transcriptional regulator, GntR family protein MSMEG_5631 5716317 - 5717849 + | AMP-dependent synthetase and ligase MSMEG_5632 5717850 - 5718623 + | oxidoreductase, short chain dehydrogenase/reductase family protein MSMEG_5633 5718620 - 5720092 + | feruloyl-CoA synthetase MSMEG_5634 5720538 - 5720095 - | hypothetical protein MSMEG_5635 5720736 - 5720548 - | hypothetical protein MSMEG_5636 5723137 - 5720762 - | P-type ATPase - metal cation transport MSMEG_5637 5724767 - 5723151 - | penicillin-binding protein 4 TERM 2176 5723414 - 5723435 + g 73 -7.9 -4.15044 | gap 1, overlap 5723418 CCGGAAGCGGTCTGG CCG-GGGCCG GCA CGGCCGGCGG TTTCTTGCCCACCAG MSMEG_5638 5725929 - 5724814 - | metallo-beta-lactamase family protein MSMEG_5639 5726662 - 5725931 - | enoyl-CoA hydratase MSMEG_5640 5728815 - 5726689 - | amylo-alpha-1,6-glucosidase TERM 2177 5726920 - 5726881 - G 80 -16.4 -3.20382 | gap 1 CTCGAGACCGAGGAA GGCGCGCACCAGCAGCAGC GGC GCCGC-GCTGGCCCACGCC TGCGGCGAGCACGAC MSMEG_5641 5729963 - 5728812 - | glycosyl transferase, group 1 family protein MSMEG_5642 5730092 - 5731561 + | acetyl-coenzyme a carboxylase carboxyl transferase TERM 2178 5731788 - 5731776 - g 75 -9.1 -4.11692 | CATCTACGTCGAAAA GGGCA CAC TGCCC ACGGCGATACTGCGA MSMEG_5643 5731669 - 5732505 + | hypothetical protein MSMEG_5644 5734564 - 5732558 - | membrane protein MSMEG_5645 5735295 - 5734567 - | hypothetical protein TERM 2179 5735227 - 5735247 + g 82 -6.8 -4.77036 | gap 1 GCGCATCGTGATCTC CCGCGCGGT GATC GCCG-GCGG TTTTTGCTCGTCGGC TERM 2180 5735513 - 5735477 - H 71 -3.8 -4.55128 | AGTGTCAAATGAAAA CCGCGCTTCGT-TAGGTG AGG CTCCTACACGAA-CACAG GCCACTGATCCGACG MSMEG_5646 5735881 - 5736054 + | hypothetical protein TERM 2181 5736186 - 5736239 + T 100 -26.2 -2.88249 | gap 1, overlap 5736237 CGGTGGTTCTGAGCG TCTGA-CGTGCCACCGGCTGCGCCG GGGGG CGGCGCAGCCGGTGGCATGCTGGGA TCTGTGGAACCTCTG MSMEG_5648 5737325 - 5736936 - | hypothetical protein MSMEG_5649 5739058 - 5737445 - | acyl-CoA synthetase TERM 2182 5738315 - 5738279 - G 70 -12.3 -3.34962 | TTCCACAGCCGACAA CGTGATCCCGGGATC GAACCCG GGTGCCGGGATCACG ATCGTGGTGCCGTGC MSMEG_5650 5740743 - 5739055 - | AMP-dependent synthetase and ligase TERM 2183 5739452 - 5739482 + g 70 -14.6 -2.82516 | ATGTAGGTGATGTAG CCGTCGGCGTCGCG CGA CGCGACGTCGCCCG TGTGGTAGTAACCGC MSMEG_5651 5740801 - 5741643 + | transcriptional regulator, LuxR family protein MSMEG_5652 5742577 - 5741657 - | alpha/beta hydrolase fold MSMEG_5654 5742793 - 5743662 + | transcriptional regulator, LysR family protein MSMEG_5653 5745124 - 5743637 - | cytosine/purine/uracil/thiamine/allantoin permease family protein MSMEG_5655 5745982 - 5745137 - | hydrolase, carbon-nitrogen family protein TERM 2184 5745199 - 5745236 + g 74 -14.1 -3.2794 | GGTACAGGTCGGGTC GGCGATCGGCCAGTGCG TCGT TGCGGTCGCCGATCGCC TTGCTGTCGGTCAGG hisD 5747351 - 5745996 - | histidinol dehydrogenase MSMEG_5657 5748392 - 5747436 - | transcriptional regulator, LysR family protein TERM 2185 5749149 - 5749103 - g 70 -14.5 -2.81547 | opp_overlap 5749140, overlap 5749100 CGGCTACATGAAGCA GC-AGTCGACGCGGCCGCAGACC GTG GG-CTACGGCCTGGTCGACTCGC CCGTGGGGCAGCTGG MSMEG_5658 5748411 - 5749523 + | epoxide hydrolase MSMEG_5659 5751437 - 5749605 - | ABC transporter, ATP-binding protein MSMEG_5660 5753386 - 5751434 - | ABC transporter ATP-binding protein MSMEG_5661 5755335 - 5753419 - | ABC transporter ATP-binding protein prrA 5755451 - 5756161 + | DNA-binding response regulator PrrA TERM 2186 5756854 - 5756831 - g 73 -9.6 -3.92542 | gap 1, overlap 5756836 CGCATCTGGAAAGAA CAGGACCGCAC CAA GT-CGGCCCTG GCGTCGGCGCGTGAT MSMEG_5663 5756171 - 5757511 + | sensor-type histidine kinase PrrB MSMEG_5664 5757954 - 5757592 - | binding protein MSMEG_5665 5758285 - 5757938 - | hypothetical protein MSMEG_5666 5757986 - 5758234 + | hypothetical protein TERM 2187 5758453 - 5758494 + GH 77 -15.8 -2.50016 | overlap 5758452 5758450 GCTGCCCCGCAGCAT CGTCGACGACCTGGGCGC CCGCGT GCGCCTGGCTCGTCGCCG CTATTCGTCGTACAC TERM 2188 5759697 - 5759657 - gH 71 -12.6 -3.23216 | gap 2 GTCGACGACGACGAA CCGCTGG--ACACCCCGGCG CAA CGCTGGGGTGTGGCCACCGG CCACGAGCGGATCCT MSMEG_5667 5758241 - 5759800 + | phytoene dehydrogenase MSMEG_5669 5759843 - 5760928 + | ISMsm2, transposase MSMEG_5668 5761374 - 5760925 - | putative transcriptional regulator MSMEG_5670 5762821 - 5761364 - | efflux membrane protein TERM 2189 5762224 - 5762186 - G 79 -15.2 -3.38786 | CACACCGAACAGGAA CGCGACGCCGAGGCCCTG GCC CACGGGGTCGACGTCGCG CATCGTCGACGACTT MSMEG_5671 5762879 - 5763358 + | YbaK/prolyl-tRNA synthetase associated region gltA 5764682 - 5763378 - | type II citrate synthase TERM 2190 5763769 - 5763780 + g 77 -3.6 -4.67234 | overlap 5763779 CCCATGAGCTTCACG CCGT CCTC GCGG TTTTTGACCTTGCGT MSMEG_5673 5765442 - 5764801 - | transcriptional regulator TERM 2191 5765193 - 5765166 - G 70 -12 -3.31726 | gap 1, overlap 5765164 TGTGCGCACAGAAGA CCGCATCGAGCTC ACC GAGCTCGG-GCGG CTGCTGCGCGAGTTC MSMEG_5674 5766815 - 5765508 - | membrane transport protein TERM 2192 5765591 - 5765540 - G 78 -13.7 -3.55548 | overlap 5765577 CAACATCCCGTGAAA CTCGCGGCTC-GGCGACCGTGACGC GGTA ACG-CACGAACGCCGGCACCGCGAG CGCGGCGATCACCAC TERM 2193 5765811 - 5765787 - G 77 -15.7 -3.17392 | overlap 5765801 GATCGTCGAACGGAA CGCCGCCGACA CCA TGTCGGCGGCC CCGCCAACGGCCAGG pdxH 5767511 - 5766819 - | pyridoxamine 5'-phosphate oxidase MSMEG_5676 5767553 - 5768686 + | citrate synthase 2 MSMEG_5677 5768683 - 5769285 + | hypothetical protein MSMEG_5678 5769673 - 5769287 - | glyoxalase/bleomycin resistance protein/dioxygenase MSMEG_5679 5769984 - 5769670 - | putative DNA-binding protein MSMEG_5680 5770134 - 5770589 + | glyoxalase family protein TERM 2194 5770608 - 5770574 - T 80 -15 -3.16564 | opp_overlap 5770606, overlap 5770604 CGCCGAGGCCATGAA GAGCATGCCGGGCTGA GAC TCAGCCCAACAGGCCC GCCGTGAGCCGTTGG MSMEG_5681 5772266 - 5770593 - | ferredoxin/ferredoxin--NADP reductase TERM 2195 5770952 - 5770980 + g 74 -16 -2.70932 | CGGGCACGGGCGCAC CGGTGGCCGGGT CGATC ACTCGGCCGCCG TCGTTGGGCACCACC MSMEG_5682 5773256 - 5772279 - | hypothetical protein map 5773416 - 5774180 + | methionine aminopeptidase, type I MSMEG_5684 5774274 - 5775386 + | phosphoserine aminotransferase MSMEG_5685 5775478 - 5776308 + | DNA-binding protein MSMEG_5686 5776597 - 5776322 - | hypothetical protein MSMEG_5687 5777451 - 5776618 - | 23s ribosomal RNA methyltransferase MSMEG_5688 5777879 - 5777448 - | regulatory protein, MarR MSMEG_5689 5777961 - 5778230 + | hypothetical protein MSMEG_5690 5778239 - 5778691 + | hypothetical protein MSMEG_5691 5779497 - 5778712 - | hypothetical protein MSMEG_5692 5779880 - 5779494 - | hypothetical protein TERM 2196 5780421 - 5780469 + GH 77 -16 -2.64616 | gap 2 TTCGGCCTCGTGCAC CTGC-CCGGCG-CGCTGTACGTGA TCG TCGCGGTCAGCGTCGCCGGCGCGG TGCTGTCGATGCGCA MSMEG_5693 5779698 - 5781245 + | transporter, major facilitator family protein MSMEG_5694 5781242 - 5781730 + | hypothetical protein MSMEG_5695 5782766 - 5781741 - | glutathione S-transferase MSMEG_5696 5783261 - 5782812 - | cold-shock DNA-binding domain-containing protein TERM 2197 5783297 - 5783267 - H 90 -11 -4.40232 | overlap 5783268 5783269 ACAAAAACACACAAA GTTCGCGTCCCGTC TGC GCCGGGACGCGATG ACGTGATCCTACTCG TERM 2198 5783296 - 5783268 - H 83 -14.5 -3.21699 | overlap 5783267 5783269 CAAAAACACACAAAG TTCGCGTCCCGTC TGC GCCGGGACGCGAT GACGTGATCCTACTC TERM 2199 5783295 - 5783269 - H 86 -18 -2.51393 | overlap 5783268 5783267 AAAAACACACAAAGT TCGCGTCCCGTC TGC GCCGGGACGCGA TGACGTGATCCTACT TERM 2200 5783579 - 5783561 - g 79 -11.6 -4.10161 | GACCATCGTCGAAAA GCCGGGAC CCC GGCCCGGC GCCCTGGTGGGCAAT MSMEG_5697 5783385 - 5783795 + | hypothetical protein TERM 2201 5783820 - 5783844 + G 93 -18.6 -3.4072 | CGCTCGGCCTACCCA CCGTCGCCCG GTCCA CGGGCGACGG TTCTGCTGGGGCCTC TERM 2202 5784071 - 5784091 + G 72 -13.3 -3.22298 | GGCATCACCAGCGTG CGGTTCACC GGC GGTGAGCCG TTGGTGGTGCGTCAC moaA 5783792 - 5784877 + | molybdenum cofactor biosynthesis protein A MSMEG_5699 5784902 - 5785144 + | ThiS family protein TERM 2203 5785190 - 5785201 + F 84 -7.2 -4.72007 | CGAGCTGGCTGTGTC GCGC TGAG GCGC TTTGTTTTCCTGCGA MSMEG_5700 5785578 - 5787038 + | secreted protein TERM 2204 5787030 - 5787053 + T 93 -18.2 -3.29461 | GCTCCGGTTCCGCCG CCGGCCTGAG CCGG CTCAGGCCGG TTCTAGGCGGAGTTG moaE 5787484 - 5787056 - | molybdopterin converting factor, subunit 2 TERM 2205 5787155 - 5787211 + g 74 -15.3 -3.06696 | gap 4 GAGACGGGCACAGGT TTCGAACGCCGCCCTGCGATGGTCCGCTG CGA CAGCGG-CCA-C-CAGGGCGGCGT-CGCC TATCTTCAGGGGGCC MSMEG_5702 5788018 - 5787521 - | molybdenum cofactor synthesis domain-containing protein moaC 5788470 - 5787997 - | molybdenum cofactor biosynthesis protein C MSMEG_5704 5788670 - 5788473 - | hypothetical protein MSMEG_5705 5788729 - 5790984 + | hypothetical protein TERM 2206 5791540 - 5791504 - g 73 -10.2 -3.9461 | overlap 5791506 GCTGCGCAACAAGAA GATCG-CGCCGATGCTCG GTG CGCGCATCGACGACGA-C ACCGTGATCGTGCAC TERM 2207 5791539 - 5791506 - g 78 -13.9 -3.56318 | gap 1, overlap 5791504 TGCGCAACAAGAAGA TCG-CGCCGATGCTCG GTG CGCGCATCGACGACGA CACCGTGATCGTGCA TERM 2208 5792806 - 5792750 - g 74 -10.7 -3.81951 | gap 2, overlap 5792752 5792753 GGCTACATCATCAAA GACGCCGACGACCTGCTGGGGCCGGCC ATCTA GACCGGCCCCGGC-GCCCGTC-GCTAC GCGTGCGGCCCGACG TERM 2209 5792803 - 5792753 - g 70 -15.4 -2.69207 | gap 2, overlap 5792752 5792750 TACATCATCAAAGAC GCCGACGACCTGCTGGGGCCGGCC ATCTA GACCGGCCCCGGC-GCCCGTC-GC TACGCGTGCGGCCCG MSMEG_5706 5791025 - 5792782 + | DNA or RNA helicase of superfamily protein II MSMEG_5707 5793156 - 5792803 - | cupin domain-containing protein MSMEG_5708 5793848 - 5793234 - | hypothetical protein MSMEG_5709 5794431 - 5793898 - | hypothetical protein MSMEG_5710 5795331 - 5794807 - | hypothetical protein TERM 2210 5795056 - 5795045 - G 72 -5.8 -4.2828 | CTGTATTCACCAAAA GCAG TCAA CTGC TCATGAAGTCCGTCG TERM 2211 5795300 - 5795266 - G 74 -12.3 -3.54543 | gap 2, overlap 5795287 AGCTACTTCCTCAAA TCGC-G-CGCCTCCTTC GAT GAAGGAGACGCCTGCGA CCGGATCTCCCTCAC MSMEG_5711 5796355 - 5795681 - | short chain dehydrogenase MSMEG_5712 5798490 - 5797558 - | LysR-family protein transcriptional regulator MSMEG_5713 5796496 - 5797728 + | major facilitator family protein transporter TERM 2212 5798528 - 5798513 - fH 72 -6.8 -4.21194 | GCCTAGTAGGCAAAA CCTCCC AGCA GAGAGG AAGCGCATCCCGTGA MSMEG_5714 5798619 - 5799317 + | short-chain dehydrogenase/reductase SDR MSMEG_5716 5799304 - 5799669 + | hypothetical protein MSMEG_5715 5800642 - 5799650 - | hypothetical protein MSMEG_5717 5800752 - 5801177 + | pyridoxamine 5'-phosphate oxidase family protein MSMEG_5718 5801774 - 5801244 - | transcriptional regulator, TetR family protein TERM 2213 5801852 - 5801807 - H 77 -15.8 -2.53876 | gap 2, opp_overlap 5801812, overlap 5801812 GGCCACCCTAACTTA CTTAACGATCGGTAAGCTGACG CCAG CG-CA-CTTACCGACCGTTAAG TAAGGGGAAAAGTGA TERM 2214 5802917 - 5802903 - g 77 -3.4 -4.74103 | opp_overlap 5802903 5802915, overlap 5802904 GCTTCAACGCAAAAA CCGTGG TTC CCGCGA GCGGTCTCGGCATCC MSMEG_5719 5801864 - 5803072 + | oxidoreductase TERM 2215 5803103 - 5803144 + T 100 -30.5 -2.78463 | opp_overlap 5803103 TGCCTGACGAGCAGA CGCGAATGTCCCCCAAAAC CAGG GTTTTGGGGGACATTCGCG TCTGGTCACGCCGGT TERM 2216 5803144 - 5803103 - T 100 -30.5 -2.82516 | opp_overlap 5803103 TGCCTGACGAGCAGA CGCGAATGTCCCCCAAAAC CAGG GTTTTGGGGGACATTCGCG TCTGGTCACGCCGGT MSMEG_5720 5805325 - 5803163 - | putative 3-hydroxyacyl-CoA dehydrogenase TERM 2217 5804123 - 5804171 + g 75 -5.8 -4.46615 | GTCCACACCCTTGAG GTCGGCCGCGTCGGC-GGTCGGGG TGA TCCGGGCCAGCAG-CGCGTCGGAC TTTTCCTTGGTGGTC MSMEG_5721 5806554 - 5805343 - | acetyl-CoA acetyltransferase MSMEG_5722 5806889 - 5806701 - | hypothetical protein MSMEG_5723 5807560 - 5807129 - | endoribonuclease L-psp family protein MSMEG_5724 5807649 - 5808116 + | transcriptional regulator MarR MSMEG_5725 5808140 - 5809312 + | aminotransferase TERM 2218 5810330 - 5810342 + G 83 -9.1 -4.56597 | CGTGACACGCTGGCT CGCGA CGT TCGCG TTTTTCCGCGCCGCG MSMEG_5726 5809341 - 5810558 + | hypothetical protein alc 5810572 - 5811534 + | allantoicase MSMEG_5728 5811531 - 5812430 + | polysaccharide deacetylase family protein MSMEG_5729 5813212 - 5812505 - | hydantoin racemase MSMEG_5730 5814771 - 5813209 - | permease for cytosine/purines, uracil, thiamine, allantoin transporter TERM 2219 5814734 - 5814695 - G 74 -16.3 -2.78384 | opp_overlap 5814686 5814696 GCCGCTTCGACGAGA TCGCCGGCCGCGACGGG GAAGCT CCCGTCGGGGCCGGCCG GTCCGCCGCCTGCGT MSMEG_5731 5815541 - 5814846 - | transcriptional regulator, GntR family protein MSMEG_5732 5816507 - 5815587 - | monooxygenase MSMEG_5733 5817425 - 5816547 - | universal stress protein family protein MSMEG_5734 5818581 - 5817499 - | alpha-methylacyl-CoA racemase TERM 2220 5817961 - 5817910 - G 89 -19.4 -3.31792 | gap 1 GTAGCACCGGTAGAA CGGGGCGCCGC-CGTCGAGCAGGAA CGA CTCCCGCTCGTCGCGCAACGACCCG GTGGCCCGCATGGTC TERM 2221 5819219 - 5819249 + G 74 -11.9 -3.78775 | gap 1, opp_overlap 5819215 5819219 CCGCAACGCAACTCA TCGGCGAGCACCGG TTGA CCG-TGCTGGCCGA TTTCCTGGTGCACCG TERM 2222 5820034 - 5819997 - g 73 -10.5 -3.9461 | GGTCGTCAACAACAA CGGCTACACCGTGGAGC GCGC GATCCACGGTGTCACGG CCCGCTACAACGACA MSMEG_5735 5818600 - 5820267 + | indole-3-pyruvate decarboxylase MSMEG_5736 5820718 - 5820278 - | cyclase/dehydrase MSMEG_5738 5820751 - 5821098 + | hypothetical protein MSMEG_5737 5821262 - 5821095 - | hypothetical protein MSMEG_5739 5821317 - 5824838 + | putative long-chain fatty-acid--CoA ligase MSMEG_5740 5825105 - 5824860 - | hypothetical protein MSMEG_5741 5825788 - 5825153 - | hypothetical protein MSMEG_5742 5826817 - 5825819 - | acyltransferase domain-containing protein TERM 2223 5826078 - 5826120 + g 80 -16.4 -3.14132 | gap 3, opp_overlap 5826078 GTCAGCACCAGCACA CTGGC-GTGCGGCGCGCCGGC CATC GCCG-C-CGCCGCACCGCCGG TTCGTGGCGGCAACG MSMEG_5743 5827632 - 5826814 - | patatin gvpK 5827940 - 5827650 - | gas vesicle protein K MSMEG_5745 5828140 - 5827940 - | gas vesicle synthesis protein MSMEG_5746 5828853 - 5828137 - | gas vesicle protein MSMEG_5747 5829433 - 5828870 - | hypothetical protein MSMEG_5748 5830131 - 5829490 - | hypothetical protein TERM 2224 5830080 - 5830047 - G 72 -14.6 -2.92463 | gap 1 TGGAGCACCCACACA GGCCGCGGTCGGCGA AGGTG CCGCCGACCA-GGCC GGGTCGCCACTGGGC MSMEG_5749 5830304 - 5830140 - | hypothetical protein MSMEG_5750 5830420 - 5830307 - | hypothetical protein MSMEG_5751 5830830 - 5830537 - | putative adhesin/hemolysin MSMEG_5753 5831541 - 5832110 + | serine/threonine specific protein phosphatase MSMEG_5752 5832586 - 5832107 - | hypothetical protein MSMEG_5754 5832749 - 5833963 + | gp41 protein TERM 2225 5833983 - 5833955 - T 77 -12.5 -3.62255 | overlap 5833951 5833956 GGGAAGAAGAAGGAA GCGAAGTGACACA AGC CGTGTCACTTCGG GAGCCGCCCGAGGAA TERM 2226 5833982 - 5833956 - T 78 -16 -2.7663 | overlap 5833955 5833951 GGAAGAAGAAGGAAG CGAAGTGACACA AGC CGTGTCACTTCG GGAGCCGCCCGAGGA TERM 2227 5834084 - 5834067 - T 100 -11.3 -5.07275 | opp_overlap 5834067 CCAGATACAGAAAAA CCACCTG TCAC CAGGTGG TTCTCTCAGTGGCCA TERM 2228 5834067 - 5834084 + T 72 -11.3 -3.51924 | opp_overlap 5834067 CCAGATACAGAAAAA CCACCTG TCAC CAGGTGG TTCTCTCAGTGGCCA MSMEG_5759 5835828 - 5834677 - | PE family protein TERM 2229 5835790 - 5835732 - G 70 -12.3 -3.31461 | gap 1 CACCGACCGTCAGAA CGGTGTCCGCGACGACGGCCGGCGCGAC GGCA ATCGCCCCGGCGGCGATCACCGAC-CCG ACCGCGATCAGCTGT MSMEG_5760 5836135 - 5837526 + | GntR-family protein regulator TERM 2230 5837886 - 5837873 - g 83 -4.5 -4.82667 | overlap 5837874 CTACCAGATGAAAAA CCTCG AGGC CGAGA GCTGGACCCGCGTGC MSMEG_5761 5837607 - 5838014 + | cupin domain-containing protein MSMEG_5762 5838020 - 5838943 + | zinc-binding oxidoreductase MSMEG_5763 5838945 - 5839619 + | hypothetical protein MSMEG_5764 5839631 - 5840230 + | putative cyanamide hydratase MSMEG_5765 5840603 - 5840238 - | globin MSMEG_5766 5840791 - 5841132 + | hypothetical protein MSMEG_5767 5842152 - 5841139 - | hypothetical protein MSMEG_5768 5842231 - 5842815 + | hypothetical protein MSMEG_5769 5843261 - 5842827 - | hypothetical protein MSMEG_5770 5843888 - 5843430 - | hypothetical protein MSMEG_5771 5844388 - 5843975 - | hypothetical protein TERM 2231 5845002 - 5845049 + Gr 78 -13.4 -3.53224 | gap 1, opp_overlap 5845034 5845037, overlap 5844989 GAGCTGCGCGTCGAG CAGGTCACCC-GCGGCTTCTCGC CCG GCCAGAACCAGCAGGGCGACCTG TTTGCCGAGAGCCTG MSMEG_5772 5845887 - 5845429 - | cytospin-A, putative MSMEG_5773 5844594 - 5845598 + | fatty acid desaturase MSMEG_5774 5845595 - 5846764 + | tRNA-dihydrouridine synthase, putative MSMEG_5775 5847201 - 5849369 + | LytR/CpsA/Psr family protein phoU 5849446 - 5850114 + | phosphate transport system regulatory protein PhoU MSMEG_5777 5850631 - 5850116 - | transcription regulator MSMEG_5778 5850730 - 5851704 + | alcohol dehydrogenase, zinc-binding pstB 5852493 - 5851717 - | phosphate ABC transporter, ATP-binding protein pstA 5853428 - 5852502 - | phosphate ABC transporter, permease protein PstA pstC 5854480 - 5853425 - | phosphate ABC transporter, permease protein PstC TERM 2232 5854301 - 5854265 - G 86 -18.8 -3.23216 | GCGCATGAGCAGGAA CACCCCGATCGCCGCG ATGAG CGCGACGATCAGGATG CCCGAGCCCTCGGCG pstS 5855665 - 5854529 - | phosphate ABC transporter, phosphate-binding protein PstS TERM 2233 5855929 - 5855945 + r 71 -7.9 -4.08216 | opp_overlap 5855920 ACAGCAGCACCGTGG GCTCGGG CCC CGCGAGC TTTTCCGCCAGATGG MSMEG_5784 5857492 - 5856707 - | transcriptional regulatory protein TERM 2234 5857334 - 5857318 - G 79 -10.8 -3.97406 | overlap 5857310 5857309 CCAAAAGGCGACAAA GGCCGC GCGCG GCGGCC AGATCTGTGCGAGCG MSMEG_5785 5857658 - 5858473 + | hypothetical protein MSMEG_5786 5858470 - 5858934 + | thiredoxin MSMEG_5787 5859149 - 5858967 - | hypothetical protein MSMEG_5788 5859148 - 5859627 + | integral membrane protein MSMEG_5789 5859664 - 5860497 + | putative thiosulfate sulfurtransferase MSMEG_5790 5860529 - 5860801 + | SseC protein TERM 2235 5860863 - 5860819 - f 100 -34.5 -3.29511 | opp_overlap 5860821 CGGATCGCCTGACAA CAGCGATGCCCGCAGCGTCTC ATC GAGGCGCTGCGGGCATCGCTG TTCGCGTTCCGGCCC TERM 2236 5860821 - 5860861 + F 100 -33.5 -3.09492 | opp_overlap 5860819 GATCGCCTGACAACA GCGATGCCCGCAGCGTCTC ATC GAGGCGCTGCGGGCATCGC TGTTCGCGTTCCGGC MSMEG_5791 5860943 - 5861041 + | hypothetical protein MSMEG_5792 5861038 - 5861694 + | hypothetical protein MSMEG_5793 5861703 - 5861984 + | hypothetical protein MSMEG_5794 5862063 - 5862440 + | hypothetical protein MSMEG_5795 5863562 - 5862693 - | 4-amino-4-deoxychorismate lyase MSMEG_5796 5863663 - 5864742 + | glycine cleavage T-protein (aminomethyl transferase) TERM 2237 5864955 - 5864983 + F 87 -15.3 -3.61398 | opp_overlap 5864946 AAATGACACTCAGAT CGGAGCCGCCTAA TAA TTGGGCCGCTCCG TTATTGCGCGAGGGG MSMEG_5797 5865007 - 5865180 + | hypothetical protein purM 5866293 - 5865211 - | phosphoribosylaminoimidazole synthetase TERM 2238 5866187 - 5866145 - G 71 -11.9 -3.54307 | gap 2, overlap 5866134 AACAGGCCCGCGAAA CCGCCGAGGCCGCCACGGACC TCA GGGC-G-GGTGGCCTTGGCGG CCAGAGGCTTGAACA MSMEG_5799 5866339 - 5867736 + | nucleoside-diphosphate-sugar epimerase purF 5869279 - 5867744 - | amidophosphoribosyltransferase TERM 2239 5868626 - 5868599 - G 72 -13.4 -3.14344 | gap 1 GATGTCGCGGACGAA CGAGGCGC-CGAC GAT GTCGAGCGCCGCG GTCTCCGACGCGACC MSMEG_5801 5870710 - 5869361 - | hydroxylase MSMEG_5802 5870893 - 5871624 + | oxidoreductase, short chain dehydrogenase/reductase family protein MSMEG_5803 5871708 - 5872067 + | hypothetical protein TERM 2240 5872170 - 5872152 - g 75 -10.2 -4.07568 | opp_overlap 5872161, overlap 5872153 CCCTGCGGGTGAAAA GGCCACGC CCG GCGTGGCA GGCCGTGCAGTCGTT MSMEG_5804 5872064 - 5872759 + | hypothetical protein MSMEG_5805 5872756 - 5872902 + | hypothetical protein MSMEG_5806 5873104 - 5872991 - | hypothetical protein TERM 2241 5873586 - 5873560 - g 77 -10.9 -3.85698 | TCGGGTGGGCAGAAA CAGCGCGTCG-GC ATC GCACG-CGCGCTG GCACTGGGCCCCTCG MSMEG_5807 5873134 - 5874081 + | D-methionine transport ATP-binding protein MetN TERM 2242 5874321 - 5874285 - g 70 -12.9 -3.28712 | opp_overlap 5874285 CGTGGTCCTGCACAA CACCTCCGAGTTCGGGC TGC GCCCCAACCCGTCGGTG TTCCGTGTCCTCAAC MSMEG_5808 5874133 - 5874816 + | binding-protein-dependent transport systems inner membrane component TERM 2243 5874945 - 5874887 - g 100 -13.1 -4.79955 | gap 2, opp_overlap 5874906 AGATCGAGAAGAAAA GACGCTGGCCGTGGATCGCCGGCGCCG CGACCGC CGTCGC-GGCGATCGTCGGCG-GCGTC GTCTACGCCAACCTC TERM 2244 5874906 - 5874943 + G 79 -19.1 -2.62184 | gap 1, opp_overlap 5874887 CTGGCCGTGGATCGC CGGCGCCG-CGACCGCCG TCG CGGCGATCGTCGGCGGCG TCGTCTACGCCAACC MSMEG_5809 5874832 - 5875731 + | lipoprotein YaeC, putative MSMEG_5810 5875728 - 5877137 + | putative monooxygenase MSMEG_5811 5877794 - 5877168 - | transcriptional regulator, TetR family protein MSMEG_5812 5877928 - 5878758 + | short chain dehydrogenase MSMEG_5813 5878755 - 5879558 + | carveol dehydrogenase pcaC 5879581 - 5880393 + | hypothetical protein MSMEG_5815 5880390 - 5881853 + | betaine aldehyde dehydrogenase MSMEG_5816 5882145 - 5883410 + | hypothetical protein MSMEG_5817 5883806 - 5883420 - | hypothetical protein TERM 2245 5884063 - 5884008 - g 74 -13.4 -3.36803 | GAAGGTGACCTACAA CGGTGTGCCGGT-C-GGCCGCGTGGCCG AGGT CGGCACCGCGGCCCGCACCGG-A-ACCG GTGTCCGCGCGCGGG MSMEG_5818 5883823 - 5885037 + | virulence factor Mce family protein MSMEG_5819 5885077 - 5885499 + | pyridoxamine 5'-phosphate oxidase family protein TERM 2246 5885592 - 5885621 + G 72 -13.5 -3.14132 | CTGTCCGGATGCCAA CCGTTCGGCGCCG ATCA CGACGCCGAACGC TTCGTCAGACCGGGC MSMEG_5820 5885520 - 5885951 + | hypothetical protein TERM 2247 5886856 - 5886901 + GT 71 -10.3 -3.64703 | gap 1, overlap 5886857 5886893 5886896 ACCATGTGGGCTGCC ACGCGCGTCGCCGCGCGGTTGT TCG GCGGCGGCGTGGTGAC-CGCGG TTTCGGTGCCCGCGG TERM 2248 5886857 - 5886900 + GT 73 -13.8 -2.78679 | gap 1, overlap 5886856 5886893 5886896 CCATGTGGGCTGCCA CGCGCGTCGCCGCGCGGTTGT TCG GCGGCGGCGTGGTGAC-CGCG GTTTCGGTGCCCGCG TERM 2249 5887160 - 5887192 + GT 81 -11.2 -4.09685 | CGATCTGGCCGCTGC TCGTGGCGGCCGTG ATCAC TGCGGCCGCGGCGA TTTTCGCGCGTACCA MSMEG_5821 5887831 - 5887175 - | caax amino protease family protein MSMEG_5822 5885977 - 5887236 + | hypothetical protein MSMEG_5823 5889561 - 5887831 - | membrane-spanning protein purL 5891855 - 5889558 - | phosphoribosylformylglycinamidine synthase II MSMEG_5825 5893060 - 5891852 - | Na+/H+ antiporter MSMEG_5826 5892606 - 5894912 + | pyruvate decarboxylase MSMEG_5827 5895273 - 5894923 - | glyoxalase family protein MSMEG_5828 5896554 - 5895289 - | putative aminopeptidase 2 MSMEG_5829 5896604 - 5897635 + | Dyp-type peroxidase MSMEG_5830 5897635 - 5898432 + | 29 kDa antigen Cfp29 TERM 2250 5898572 - 5898525 - T 81 -16.4 -2.72991 | gap 1 GCACACCGCGAATCA GCAGCACTCGGCGCACGCTCG TGGATGG CGAGAGTGCGCAGAGTGCT-C AGCTCGGCGGACTCA purQ 5899271 - 5898597 - | phosphoribosylformylglycinamidine synthase subunit I TERM 2251 5898968 - 5898942 - G 74 -13.6 -3.25823 | GTCGCGGCAGACGAA GTGCAGACCCGC GTT GCGGGTCAGCGC GCCGGGCAGCAGGCC purS 5899516 - 5899268 - | phosphoribosylformylglycinamidine synthase subunit PurS MSMEG_5834 5900103 - 5900858 + | metallo-beta-lactamase superfamily protein MSMEG_5835 5902514 - 5900871 - | putative FAD-binding dehydrogenase MSMEG_5836 5903252 - 5902536 - | hypothetical protein MSMEG_5837 5903802 - 5903317 - | glutathione peroxidase family protein MSMEG_5838 5904367 - 5903822 - | TetR-family protein transcriptional regulator MSMEG_5839 5906987 - 5904831 - | protease 2 MSMEG_5840 5904456 - 5904905 + | hypothetical protein purC 5907883 - 5906984 - | phosphoribosylaminoimidazole-succinocarboxamide synthase MSMEG_5842 5907914 - 5908537 + | hypothetical protein MSMEG_5843 5910120 - 5909473 - | hypothetical protein MSMEG_5844 5908629 - 5909528 + | hypothetical protein MSMEG_5845 5911016 - 5910084 - | putative C4-dicarboxylate transporter MSMEG_5846 5912161 - 5910956 - | NikQ protein purB 5913602 - 5912178 - | adenylosuccinate lyase TERM 2252 5912946 - 5912930 - G 75 -9.4 -4.10657 | CGACACTGGTGAAAA CCTCGG TGAAC CCGAGG AATTCGGCGACGCGG TERM 2253 5913132 - 5913153 + g 74 -13.7 -3.35798 | GAATCGCTTGCCCAG CGTCGTGGC CTGG GCCGCGACG TTGTGGCTGCGGCCT TERM 2254 5913533 - 5913559 + g 74 -15.2 -3.06831 | TGATCTTGGCTTCCG GCGACCAGATGG CAA CCATCTCGTCGC TTGCGTAGCGGTTGG TERM 2255 5915283 - 5915303 + G 71 -11.1 -3.61398 | TACCTCGACCTGCAG GGCAACGCG CAT CGGGTTGCC TTGTTGCGCAACCGG MSMEG_5849 5913636 - 5915339 + | hypothetical protein MSMEG_5848 5916760 - 5915336 - | amino acid permease-associated region MSMEG_5850 5917400 - 5916780 - | transcriptional regulator, TetR family protein MSMEG_5851 5917517 - 5918410 + | putative esterase superfamily protein purD 5919597 - 5918416 - | phosphoribosylamine--glycine ligase MSMEG_5853 5919783 - 5921018 + | cytochrome P450 MSMEG_5854 5921046 - 5921669 + | transcriptional regulator, TetR family protein MSMEG_5855 5922956 - 5921730 - | hypothetical protein pcaC 5923401 - 5922946 - | hypothetical protein MSMEG_5857 5924258 - 5923404 - | oxidoreductase MSMEG_5858 5925019 - 5924255 - | short chain dehydrogenase MSMEG_5859 5926500 - 5925031 - | aldehyde dehydrogenase (NAD) family protein MSMEG_5860 5926686 - 5927285 + | transcriptional regulator, TetR family protein MSMEG_5861 5927282 - 5928484 + | cytochrome P450 109 TERM 2256 5928663 - 5928645 - g 70 -14.6 -2.78715 | AACTCGTCGACCAGA TCACCGCC CGC GGCGGTGA GGCCGTCGCACTGCC MSMEG_5862 5928485 - 5929312 + | short chain dehydrogenase MSMEG_5863 5929309 - 5930664 + | cytochrome P450 51 MSMEG_5864 5930669 - 5930872 + | cytochrome P450 51 MSMEG_5865 5930884 - 5931423 + | hypothetical protein MSMEG_5866 5931523 - 5932650 + | alcohol dehydrogenase B MSMEG_5867 5932661 - 5933098 + | steroid delta-isomerase MSMEG_5869 5933124 - 5933951 + | putative short chain dehydrogenase MSMEG_5868 5934246 - 5933938 - | hypothetical protein MSMEG_5871 5934342 - 5934770 + | HIT family protein MSMEG_5870 5936157 - 5934730 - | sensor histidine kinase PhoR phoP 5936918 - 5936199 - | DNA-binding response regulator PhoP MSMEG_5873 5937058 - 5937876 + | hypothetical protein MSMEG_5876 5938086 - 5938424 + | H-N-H endonuclease F-TflIV MSMEG_5875 5938591 - 5938421 - | hypothetical protein MSMEG_5877 5939687 - 5938617 - | hypothetical protein TERM 2257 5939308 - 5939330 + g 73 -12.6 -3.53224 | overlap 5939309 TTGTGCACGCCCGGC GTCGGCGCGC GCT GCGCGCCGGG TTTGGGCAGCGGATC TERM 2258 5939309 - 5939329 + g 74 -16.1 -2.71791 | overlap 5939308 TGTGCACGCCCGGCG TCGGCGCGC GCT GCGCGCCGG GTTTGGGCAGCGGAT MSMEG_5878 5940551 - 5939853 - | serine esterase, cutinase family protein MSMEG_5879 5941298 - 5940642 - | D-alanyl-D-alanine dipeptidase TERM 2259 5941912 - 5941893 - g 78 -12.1 -3.79906 | opp_overlap 5941911 CTACCCGGACAACAA CGCCGGC GGCATG GCCGGCG CGCCGCCGGACGAGG MSMEG_5880 5941399 - 5943753 + | nicotine dehydrogenase TERM 2260 5944424 - 5944407 - g 74 -11.3 -3.77464 | opp_overlap 5944408 AGACGACGCAGCAAA TCGCAGG CGGG CCTGCGA CCCGAGGACCTGCAG MSMEG_5881 5943756 - 5944466 + | putative carbon monoxide dehydrogenase subunit G TERM 2261 5944879 - 5944915 + G 71 -10.9 -3.61715 | GACCATCGAGGCCAC CTCGGCGCGCGGCG-TC CGCGA GATCCCCGC-CGCCGAG TTCTTCACGGGCCTG MSMEG_5882 5944463 - 5945350 + | carbon monoxide dehydrogenase medium chain MSMEG_5883 5945343 - 5945855 + | 2Fe-2S-binding domain-containing protein MSMEG_5884 5945888 - 5946787 + | 3-hydroxyisobutyrate dehydrogenase family protein MSMEG_5885 5947627 - 5946791 - | short chain dehydrogenase MSMEG_5886 5948610 - 5947663 - | enoyl-CoA hydratase MSMEG_5887 5948845 - 5949216 + | intersectin-EH binding protein Ibp1 MSMEG_5888 5949354 - 5949644 + | hypothetical protein MSMEG_5889 5949761 - 5950150 + | hypothetical protein TERM 2262 5950152 - 5950193 + F 100 -20.3 -3.4252 | gap 1, overlap 5950138 5950155 GTTCGATCGGCTGAC CAGCGGTGAGGCGACCGGGA TTT TCCCGGTCGCCT-ACAGTTG TTCTCATGCCTGCGA TERM 2263 5950155 - 5950190 + F 95 -18.4 -3.8512 | gap 1, overlap 5950138 5950152 CGATCGGCTGACCAG CGGTGAGGCGACCGGGA TTT TCCCGGTCGCCT-ACAG TTGTTCTCATGCCTG MSMEG_5890 5950199 - 5950363 + | hypothetical protein MSMEG_5892 5950364 - 5951875 + | alpha,alpha-trehalose-phosphate synthase (UDP-forming) MSMEG_5891 5952933 - 5951872 - | ISMsm5, transposase MSMEG_5893 5953462 - 5952977 - | hypothetical protein MSMEG_5894 5954094 - 5953462 - | hypothetical protein MSMEG_5895 5955857 - 5954163 - | virulence factor mce family protein MSMEG_5896 5957006 - 5955858 - | virulence factor Mce family protein MSMEG_5897 5958430 - 5957066 - | virulence factor mce family protein MSMEG_5898 5959485 - 5958427 - | virulence factor Mce family protein MSMEG_5899 5960512 - 5959478 - | virulence factor Mce family protein TERM 2264 5959692 - 5959712 + g 70 -12.5 -3.35679 | TTGCGTTCGTCCATC CGTCCCGCC ATG GGCCGGACG TTCTCGATGACGCCC MSMEG_5900 5961715 - 5960513 - | virulence factor Mce family protein MSMEG_5901 5962585 - 5961722 - | TrnB2 protein MSMEG_5902 5963384 - 5962620 - | hypothetical protein fabG 5964604 - 5963654 - | 3-ketoacyl-(acyl-carrier-protein) reductase MSMEG_5904 5964838 - 5964647 - | hypothetical protein MSMEG_5905 5965067 - 5964972 - | hypothetical protein TERM 2265 5965236 - 5965275 + GH 70 -9 -3.87815 | CATGGACGGGCTGAT CTTCACCGACGAGGCCGC GATC GCGGGCGCGCCGGTGCCG TTTCTGACCATCAAC MSMEG_5906 5965003 - 5966181 + | putative acyl-CoA dehydrogenase MSMEG_5907 5966201 - 5967298 + | acyl-CoA dehydrogenase TERM 2266 5967468 - 5967413 - g 78 -17.6 -2.78384 | gap 2, overlap 5967416 GCTGGTCCGAGCACA TCACCGCGGGTGCCCAGGTGGGCGCG GCGCTG CGCGCCCGCCT-GG-ACCCGCAGCGG CCCGGCCACGTCGGG TERM 2267 5967468 - 5967416 - g 82 -20.5 -2.66316 | gap 1, overlap 5967413 GGTCCGAGCACATCA CCGCGG-GTGCCCAGGTGGGCGCG GCGCTG CGCGCCCGCCTGGACCCGCAGCGG CCCGGCCACGTCGGG TERM 2268 5967480 - 5967504 + G 71 -9.9 -3.81848 | GCGGCCCGGCCACGT CGGGGTGCTGC TGG GCAACACCACG TTCTTCTCGAGTCTT MSMEG_5908 5967301 - 5968845 + | acyl-CoA synthetase TERM 2269 5969737 - 5969715 - gf 74 -12.7 -3.19463 | GGCATCAGCTACGAA GCCGCGATG CTGCT CACCGCGGC CACCCCCACCGACGA MSMEG_5909 5968842 - 5969831 + | oxidoreductase MSMEG_5910 5970918 - 5970523 - | quinone binding protein MSMEG_5911 5969786 - 5970586 + | AraC family protein transcriptional regulator gabD2 5971046 - 5972599 + | succinic semialdehyde dehydrogenase MSMEG_5913 5973724 - 5972603 - | dioxygenase MSMEG_5914 5975390 - 5973735 - | acyl-CoA synthetase MSMEG_5915 5975459 - 5976259 + | enoyl-CoA hydratase TERM 2270 5976315 - 5976259 - T 100 -22.6 -2.81547 | opp_overlap 5976268 5976269, overlap 5976256 5976261 5976271 CTTCCAGATGAAGTA GACGC-GAACGCAGTTGAGGCCTGCTCG ATT CGAGCAGGCCTCAACTGTTTTCAGC-TC AGCGCCAGTGTCCGG TERM 2271 5976314 - 5976261 - T 100 -21.9 -2.95521 | gap 1, opp_overlap 5976268 5976269, overlap 5976256 5976259 5976271 TCCAGATGAAGTAGA CGC-GAACGCAGTTGAGGCCTGCTCG ATT CGAGCAGGCCTCAACTGTTTTCAGCT CAGCGCCAGTGTCCG TERM 2272 5976269 - 5976305 + T 100 -29.7 -4.13767 | opp_overlap 5976256 5976261 5976259 5976271, overlap 5976268 AAGTAGACGCGAACG CAGTTGAGGCCTGCTCG ATT CGAGCAGGCCTCAACTG TTTTCAGCTCAGCGC TERM 2273 5976303 - 5976271 - T 100 -26.5 -2.54523 | opp_overlap 5976268 5976269, overlap 5976256 5976261 5976259 GTAGACGCGAACGCA GTTGAGGCCTGCTCG ATT CGAGCAGGCCTCAAC TGTTTTCAGCTCAGC MSMEG_5916 5976595 - 5976314 - | hypothetical protein TERM 2274 5976794 - 5976812 + H 72 -3 -4.67011 | opp_overlap 5976795, overlap 5976795 CCCGAATGTGAATCC ACAGCGAA TCT TTCGCCGA TTTTTCGCTGACGTT MSMEG_5917 5976871 - 5977719 + | hypothetical protein MSMEG_5918 5978996 - 5977791 - | P450 heme-thiolate protein MSMEG_5919 5979709 - 5978993 - | hypothetical protein MSMEG_5920 5980784 - 5979753 - | FMN-dependent monooxygenase MSMEG_5921 5980944 - 5981846 + | hypothetical protein MSMEG_5922 5981886 - 5982929 + | lipid-transfer protein MSMEG_5923 5982929 - 5984107 + | acetyl-CoA acetyltransferase TERM 2275 5984168 - 5984122 - f 90 -15.9 -3.53563 | opp_overlap 5984122 ATATCTCCGCCGAAA CGGCATTCCGGCAGGCAAG GTGCGAGTG CACGCCTGCCGGAATGTCG TTTCGGCGCGTGAGA TERM 2276 5984122 - 5984168 + F 90 -15.9 -3.54424 | opp_overlap 5984122 ATATCTCCGCCGAAA CGGCATTCCGGCAGGCAAG GTGCGAGTG CACGCCTGCCGGAATGTCG TTTCGGCGCGTGAGA MSMEG_5924 5984266 - 5984898 + | hypothetical protein TERM 2277 5985660 - 5985620 - g 79 -15.3 -3.31792 | overlap 5985644 CCAGTACCTGCACAA CGTGGGCCGGCCCGATGTC AAC GACCTCGGCACGGCCTACG GCGAGGCCAAGCTGG TERM 2278 5985954 - 5985931 - g 72 -4.4 -4.5442 | overlap 5985932 TCTGGAAGCACAAAA CCCGCATCGA CAAT CCGCTGCTGG TCGAGGAGGACGGCG MSMEG_5925 5985003 - 5986154 + | Rieske (2Fe-2S) domain-containing protein MSMEG_5927 5986154 - 5986630 + | hypothetical protein MSMEG_5926 5988120 - 5986627 - | putative secreted protein MSMEG_5928 5988833 - 5988156 - | hypothetical protein MSMEG_5929 5989782 - 5988883 - | hypothetical protein MSMEG_5930 5991066 - 5989939 - | hypothetical protein MSMEG_5931 5991860 - 5991078 - | short chain dehydrogenase MSMEG_5932 5992990 - 5991863 - | hypothetical protein MSMEG_5933 5993104 - 5994012 + | hypothetical protein MSMEG_5934 5994357 - 5994025 - | hypothetical protein MSMEG_5935 5996577 - 5994502 - | ATP-dependent DNA helicase TERM 2279 5996641 - 5996674 + Gr 93 -19.7 -3.07816 | opp_overlap 5996641 GGCCCGCGCATGTAA CCAGGTGGCGGCT CGGGGGAA AGCCGCCACCTGG TTACCTCAATCAGAG TERM 2280 5996674 - 5996641 - gR 100 -20.4 -3.05384 | opp_overlap 5996641 GGCCCGCGCATGTAA CCAGGTGGCGGCTC GGGGGA AAGCCGCCACCTGG TTACCTCAATCAGAG MSMEG_5936 5997067 - 5996684 - | hypothetical protein MSMEG_5938 5996576 - 5997187 + | hypothetical protein MSMEG_5937 5998202 - 5997153 - | 4-hydroxy-2-ketovalerate aldolase TERM 2281 5997628 - 5997601 - G 74 -12.7 -3.55444 | overlap 5997605 TCGTGACCGTGGAAA CCGACCTGGGC GTCCGA GCCCAGTTCGG CGACCAGCGCCTGCA MSMEG_5939 5999164 - 5998199 - | acetaldehyde dehydrogenase MSMEG_5940 5999946 - 5999161 - | 2-keto-4-pentenoate hydratase TERM 2282 5999364 - 5999380 + g 70 -9.4 -3.9461 | overlap 5999375 CATCGCTGCGGCCCT CGGCGA CCACC TCGCCG TTGTTCTTGAGGACG MSMEG_5941 6000020 - 6001720 + | 3-ketosteroid-delta-1-dehydrogenase MSMEG_5942 6005153 - 6002532 - | AMP-dependent synthetase and ligase MSMEG_5943 6001722 - 6002582 + | putative peroxisomal multifunctional enzyme type 2 TERM 2283 6005578 - 6005564 - g 72 -9.2 -4.08767 | GCGAGCCGCGCAAAA GCCGCC GTC AGCGGC CAATTCGTCCAGGCG MSMEG_5944 6005369 - 6006970 + | glucose-methanol-choline oxidoreductase MSMEG_5945 6007005 - 6007583 + | hypothetical protein cysE 6007711 - 6008229 + | serine O-acetyltransferase MSMEG_5946 6009514 - 6008195 - | hypothetical protein TERM 2284 6008598 - 6008610 + g 72 -9.1 -3.9644 | CACATGCGGATCGTC GCGTC CAC GACGC TTCTTCTCTTGACGA MSMEG_5948 6010416 - 6009511 - | glycosyl transferase MSMEG_5949 6011549 - 6010413 - | hypothetical protein MSMEG_5950 6011799 - 6012347 + | putative colanic acid biosynthesis acetyltransferase WcaF TERM 2285 6012934 - 6012946 + G 72 -9.1 -4.07568 | CGAACTTTGGGGCGA GCACC GGA GGTGC TTTTCGCAGCGCGCA MSMEG_5951 6012352 - 6013476 + | glycosyl transferase, group 1, putative MSMEG_5952 6013473 - 6014132 + | hypothetical protein MSMEG_5953 6014129 - 6014881 + | hypothetical protein MSMEG_5954 6014893 - 6015528 + | cell surface polysaccharide biosynthesis, putative MSMEG_5955 6015525 - 6016190 + | protein-tyrosine kinase, putative MSMEG_5956 6017173 - 6016202 - | NAD dependent epimerase/dehydratase family protein algD 6018887 - 6017397 - | GDP-mannose 6-dehydrogenase AlgD TERM 2286 6018534 - 6018569 + g 79 -14.7 -3.28791 | GCTGAGCCGGCCGGC GGCGACCTCGCCGAA GATGAG TTCGCCGAGGCCGCC TTCTACCACCGGGCT MSMEG_5958 6019278 - 6020018 + | hypothetical protein MSMEG_5960 6020161 - 6021429 + | O-antigen polymerase, putative MSMEG_5959 6022453 - 6021392 - | hypothetical protein MSMEG_5961 6023439 - 6022498 - | glycosyl transferase, group 2 family protein, putative MSMEG_5962 6024206 - 6023439 - | glycosyl transferase, family protein 2 MSMEG_5963 6026290 - 6024203 - | glycosyl transferase, family protein 2 TERM 2287 6025697 - 6025712 + g 72 -6.1 -4.25104 | CACCACCGACGGCTC GGTCG GTACCA CGACC TTTTCGTGCGAGGCG MSMEG_5964 6027831 - 6026548 - | glycosyl transferase, group 1, putative TERM 2288 6029123 - 6029144 + G 70 -14.5 -2.78018 | opp_overlap 6029116 6029113, overlap 6029121 6029108 GAGAATCAGCCCGCG TACGGGCGA GAGA TCGCCCGTA TCGTTGGTGCCGCAT MSMEG_5965 6028304 - 6029836 + | hypothetical protein MSMEG_5966 6030627 - 6029863 - | oxidoreductase, short chain dehydrogenase/reductase family protein MSMEG_5967 6032335 - 6030680 - | glucose-methanol-choline oxidoreductase TERM 2289 6032330 - 6032320 - G 84 -4.6 -5.00616 | TGCCCGTTGAAAAAA CCCA CTT CGGG CACACCATCTGTTCC MSMEG_5968 6034267 - 6032735 - | polysaccharide biosynthesis protein MSMEG_5969 6035585 - 6034371 - | hypothetical protein MSMEG_5970 6035857 - 6037233 + | glutamate-1-semialdehyde 2,1-aminomutase MSMEG_5971 6037508 - 6037984 + | hypothetical protein MSMEG_5972 6038726 - 6038034 - | hypothetical protein MSMEG_5973 6038769 - 6038999 + | hypothetical protein MSMEG_5974 6039284 - 6039442 + | hypothetical protein MSMEG_5975 6040632 - 6039559 - | methyltransferase type 12, putative rfbC 6040647 - 6041201 + | dTDP-4-dehydrorhamnose 3,5-epimerase MSMEG_5976 6042213 - 6041185 - | epimerase/dehydratase MSMEG_5978 6042911 - 6042243 - | GlcNAc-PI de-N-acetylase family protein MSMEG_5979 6043708 - 6042908 - | transferase MSMEG_5980 6044961 - 6043705 - | methyltransferase MSMEG_5981 6045992 - 6044958 - | glycosyl transferase, putative MSMEG_5982 6047368 - 6046007 - | UDP-glucose 6-dehydrogenase TERM 2290 6046984 - 6047008 + g 71 -10.8 -3.58343 | gap 1, overlap 6046987 ACCGACCTAGGCGTG TCG-CGGTTCC CACG GGAACCGTCGA TTTCCCGATGATGAG rfbA 6048243 - 6047365 - | glucose-1-phosphate thymidylyltransferase MSMEG_5984 6049809 - 6048253 - | undecaprenyl-phosphate galactosephosphotransferase MSMEG_5985 6050765 - 6049806 - | NAD dependent epimerase/dehydratase family protein TERM 2291 6049930 - 6049945 + g 100 -5.4 -5.60993 | overlap 6049918 CATCCGAGCGTGTAC TCGGTG TTGA CATCGA TTTTTTTCTCGGACA glmS 6052589 - 6050802 - | glucosamine--fructose-6-phosphate aminotransferase, isomerizing MSMEG_5987 6053826 - 6052909 - | two-component regulator TERM 2292 6052977 - 6053011 + g 81 -8 -4.61231 | gap 2 CCTGGGCACGCGTGC TCACG-CC-CAGCTTG GCCAA CAGGCTGTGGACGTGA TTTTTGACGGTGTGG MSMEG_5988 6055199 - 6054384 - | hypothetical protein MSMEG_5989 6056327 - 6055221 - | hypothetical protein MSMEG_5990 6057563 - 6056400 - | lipid-transfer protein MSMEG_5991 6057973 - 6057560 - | MaoC like domain-containing protein MSMEG_5992 6058920 - 6057955 - | hypothetical protein MSMEG_5993 6060080 - 6058917 - | putative acyl-CoA dehydrogenase TERM 2293 6059169 - 6059133 - G 72 -8.5 -4.07568 | opp_overlap 6059138 GCGTTCGGTGGAAAA GACTTTCGTGGCTGCCG CGT CGGCGACCGCGATGGTC TCACCCGACGCCGCG MSMEG_5994 6061084 - 6060080 - | putative acyl-CoA dehydrogenase MSMEG_5995 6062386 - 6061103 - | P450 heme-thiolate protein MSMEG_5996 6062510 - 6063673 + | acetyl-CoA acetyltransferase MSMEG_5997 6063676 - 6064056 + | hypothetical protein MSMEG_5998 6064064 - 6064543 + | hypothetical protein TERM 2294 6064561 - 6064606 + T 100 -28.7 -3.01791 | opp_overlap 6064563 6064570, overlap 6064563 6064565 6064570 CTTCTACCGTGAGCA GACGCAAAACTGCCGCTTTTC GCGT GAAAAGCGGCAGTTTTGTGTC TGTTCGGCAGAAAAT TERM 2295 6064563 - 6064604 + T 100 -25.5 -3.06696 | opp_overlap 6064563 6064570, overlap 6064561 6064565 6064570 TCTACCGTGAGCAGA CGCAAAACTGCCGCTTTTC GCGT GAAAAGCGGCAGTTTTGTG TCTGTTCGGCAGAAA TERM 2296 6064604 - 6064563 - T 100 -23.3 -2.79183 | opp_overlap 6064563 6064561 6064565 6064570, overlap 6064570 TCTACCGTGAGCAGA CGCAAAACTGCCGCTTTTC GCGT GAAAAGCGGCAGTTTTGTG TCTGTTCGGCAGAAA TERM 2297 6064565 - 6064602 + T 100 -24.5 -3.09273 | opp_overlap 6064563 6064570, overlap 6064563 6064561 6064570 TACCGTGAGCAGACG CAAAACTGCCGCTTTTC GCGT GAAAAGCGGCAGTTTTG TGTCTGTTCGGCAGA TERM 2298 6064570 - 6064597 + T 100 -18.6 -4.68124 | opp_overlap 6064563 6064570, overlap 6064565 6064563 6064561 TGAGCAGACGCAAAA CTGCCGCTTTTC GCGT GAAAAGCGGCAG TTTTGTGTCTGTTCG TERM 2299 6064597 - 6064570 - T 100 -18.6 -4.24948 | opp_overlap 6064570 6064565 6064563 6064561, overlap 6064563 TGAGCAGACGCAAAA CTGCCGCTTTTC GCGT GAAAAGCGGCAG TTTTGTGTCTGTTCG MSMEG_5999 6065526 - 6064621 - | short chain dehydrogenase MSMEG_6000 6066324 - 6065542 - | short chain dehydrogenase MSMEG_6001 6066386 - 6067141 + | enoyl-CoA hydratase MSMEG_6002 6067138 - 6068025 + | coenzyme A transferase, subunit A MSMEG_6003 6068022 - 6068771 + | coenzyme A transferase, subunit B MSMEG_6004 6068768 - 6069844 + | oxidoreductase, 2-nitropropane dioxygenase family protein MSMEG_6005 6069888 - 6070526 + | hypothetical protein MSMEG_6006 6070523 - 6071269 + | hypothetical protein TERM 2300 6072326 - 6072285 - T 100 -23.3 -2.78596 | opp_overlap 6072285 6072292, overlap 6072292 CATCGCGCCAGCAGA CGCAAAACTGCCTGATCCC AGGG GAAATCAGGCAGTTTTGCG TCTGCTCGCGAAGGA TERM 2301 6072285 - 6072326 + T 90 -19.7 -2.78384 | gap 1, opp_overlap 6072285 6072292, overlap 6072292 CATCGCGCCAGCAGA CGCAAAACTGCCTGA-TCCC AGG GGAAATCAGGCAGTTTTGCG TCTGCTCGCGAAGGA TERM 2302 6072319 - 6072292 - T 95 -12.8 -4.24948 | opp_overlap 6072285 6072292, overlap 6072285 CCAGCAGACGCAAAA CTGCCTGATCCC AGGG GAAATCAGGCAG TTTTGCGTCTGCTCG TERM 2303 6072292 - 6072319 + T 81 -9.2 -4.24948 | gap 1, opp_overlap 6072292 6072285, overlap 6072285 CCAGCAGACGCAAAA CTGCCTGA-TCCC AGG GGAAATCAGGCAG TTTTGCGTCTGCTCG MSMEG_6008 6073491 - 6072343 - | acetyl-CoA acetyltransferase MSMEG_6009 6074101 - 6073484 - | transcriptional regulator, TetR family protein MSMEG_6010 6074416 - 6074934 + | hypothetical protein MSMEG_6011 6075848 - 6075060 - | short chain dehydrogenase MSMEG_6012 6077023 - 6075845 - | putative acyl-CoA dehydrogenase TERM 2304 6077140 - 6077118 - H 74 -13.4 -3.28791 | ACCGGGGGGTCAGAA CCGTTCCAGC GGT GCTGGACCGG ATCGCTGCGCAGTTC TERM 2305 6077558 - 6077521 - H 75 -7.5 -4.2828 | overlap 6077544 GCCGATCGACGAAAA CGACGGCACCTGGGACG AATT CATCGCGCGTGCCGACG ACGCGACGCTGGCCG TERM 2306 6079453 - 6079427 - g 83 -5.1 -4.86731 | gap 1, overlap 6079422 6079428 GCGGTGGAAAGAAAA CCCCGATCCGGC GTTC ACCG-ATCGGGT CGCGGACGCGTGGAT MSMEG_6014 6078624 - 6079766 + | putative acyl-CoA dehydrogenase MSMEG_6015 6079763 - 6080719 + | putative acyl-CoA dehydrogenase TERM 2307 6080794 - 6080770 - g 91 -15.7 -3.85698 | GCGTTGGTGGAGAAA CACGCATCGCC GGA GGCGGTGCGTG CGGCGATGGAATCCG MSMEG_6016 6080716 - 6081651 + | putative acyl-CoA dehydrogenase TERM 2308 6082764 - 6082706 - g 83 -20 -2.71681 | gap 3, opp_overlap 6082710, overlap 6082710 GAAGTTGTTGAACGA CACAGGAGTTGCCATCGCACCGGGTATCG ACTT CGACACC-G-TGCGA-GGCAACTCCTATG TCCGGCTGTCGTTCG TERM 2309 6082760 - 6082710 - g 82 -17.2 -3.00298 | gap 3, opp_overlap 6082710, overlap 6082706 TTGTTGAACGACACA GGAGTTGCCATCGCACCGGGTATCG ACTT CGACACC-G-TGCGA-GGCAACTCC TATGTCCGGCTGTCG TERM 2310 6082710 - 6082760 + G 72 -15 -2.89191 | gap 3, opp_overlap 6082710 6082706 TTGTTGAACGACACA GGAGTTGCCATCGCACCGGGTATCG ACTT CGACAC-CG-TGCGA-GGCAACTCC TATGTCCGGCTGTCG MSMEG_6017 6081669 - 6082838 + | aspartate aminotransferase MSMEG_6018 6084166 - 6082847 - | xylose transport system permease protein XylH TERM 2311 6084056 - 6084088 + g 82 -13.3 -3.67775 | GAACGTCTGATCGGA CCTGGTGTCGCCGGC GAA GCCGCCGGCGTCGGG TTGTTCACTGGCAGT MSMEG_6019 6084954 - 6084175 - | ABC-type sugar transport system ATPase component TERM 2312 6084324 - 6084340 + g 73 -12.3 -3.41745 | CGCAGATGCGGTCGG CGACGTC GAA GACGTCG TTCATGTTGTGCGAG MSMEG_6020 6086037 - 6084958 - | D-xylose-binding periplasmic protein xylA 6087313 - 6086090 - | xylose isomerase MSMEG_6022 6087420 - 6088601 + | xylose repressor, ROK-family protein transcriptional regulator MSMEG_6023 6089832 - 6088633 - | transposase TERM 2313 6090284 - 6090261 - g 82 -11.7 -4.1891 | gap 1, overlap 6090262 CTGTGGGAACAGAAA CGCCGC-GCC GCGGA GGCTGCGGCG GGCATCCCGGCGTCC TERM 2314 6090322 - 6090376 + G 100 -21.6 -3.53091 | gap 1 GCAGAGGCCTGGCCA CCGAGGTGGCGTTGGCACGGCGT GAATCCCCCA ACGCCG-GCGGACGCCACCTCGG TTTGGCCCACGCCCT MSMEG_6025 6090096 - 6091412 + | hypothetical protein MSMEG_6024 6093327 - 6091393 - | acetoacetyl-CoA synthetase MSMEG_6026 6094070 - 6093324 - | 3-hydroxybutyrate dehydrogenase MSMEG_6027 6095395 - 6094067 - | major facilitator superfamily protein MFS_1 MSMEG_6028 6095547 - 6096458 + | transcriptional regulator, LysR family protein MSMEG_6029 6096471 - 6097322 + | hypothetical protein MSMEG_6030 6098625 - 6097336 - | cytochrome p450 MSMEG_6032 6098766 - 6099374 + | transcriptional regulator, TetR family protein MSMEG_6031 6100206 - 6099367 - | carveol dehydrogenase TERM 2315 6100352 - 6100323 - RH 100 -19.3 -3.88498 | GCGGCAGATACGAAA CTGGGCCCCACCC TTCC GGACGGGGCCCAG TGCCATGAAGCGCCG MSMEG_6033 6101910 - 6100369 - | hypothetical protein TERM 2316 6101103 - 6101071 - GH 73 -12 -3.31263 | gap 2 AGGCCACTCGGAGAA GCCG-CCCTGA-CCCG TCT CGGGATCGGGGTCGGC GTAGTCGAACCCGTT MSMEG_6034 6101788 - 6101937 + | hypothetical protein TERM 2317 6102019 - 6102077 + Tr 91 -17.6 -3.28924 | gap 3, opp_overlap 6102033, overlap 6102032 6102033 CGCTTCAGAAAATTT GCCCGCACCG-AAGA-C-GGGCCCCTTCC TTGC GGACGGGGCCCGGTTCTTGTCGTGCGGGC TTCTACAACCAGGTG TERM 2318 6102032 - 6102061 + Tr 91 -14.9 -3.84406 | opp_overlap 6102033, overlap 6102019 6102033 TTGCCCGCACCGAAG ACGGGCCCCTTCC TTGC GGACGGGGCCCGG TTCTTGTCGTGCGGG TERM 2319 6102060 - 6102033 - TR 89 -18.4 -3.08679 | opp_overlap 6102032 6102019 6102033 TGCCCGCACCGAAGA CGGGCCCCTTCC TTGC GGACGGGGCCCG GTTCTTGTCGTGCGG TERM 2320 6102033 - 6102060 + Tr 89 -18.4 -2.90322 | opp_overlap 6102033, overlap 6102032 6102019 TGCCCGCACCGAAGA CGGGCCCCTTCC TTGC GGACGGGGCCCG GTTCTTGTCGTGCGG MSMEG_6035 6102649 - 6102080 - | nitrilotriacetate monooxygenase component B MSMEG_6036 6103556 - 6102657 - | biphenyl-2,3-diol 1,2-dioxygenase MSMEG_6037 6104435 - 6103557 - | 2-hydroxy-6-ketonona-2,4-dienedioic acid hydrolase MSMEG_6038 6105625 - 6104435 - | pigment production hydroxylase MSMEG_6039 6105785 - 6106846 + | oxidoreductase, electron transfer component MSMEG_6040 6106889 - 6107464 + | hypothetical protein MSMEG_6041 6109689 - 6107545 - | putative acyl-CoA dehydrogenase TERM 2321 6109208 - 6109168 - G 74 -13.3 -3.35996 | gap 1 CAGCGGGATCGAGAA GT-CCGTCGCGGTGAGCG GTTCCA CGCTCACCCCGTCGGCAC CCGCGTCGAGCAGCA MSMEG_6042 6109952 - 6110566 + | transcriptional regulator, TetR family protein TERM 2322 6111136 - 6111151 + G 78 -6.8 -4.56597 | opp_overlap 6111130 6111136 GCGGCAACAGGAAAA CGCCAC GGCA GTGGTG TTTTTCGGCGACGAC TERM 2323 6111151 - 6111136 - g 72 -4.6 -4.4261 | opp_overlap 6111136, overlap 6111130 GCGGCAACAGGAAAA CGCCAC GGCA GTGGTG TTTTTCGGCGACGAC otsB 6110570 - 6111319 + | trehalose-phosphatase MSMEG_6044 6112420 - 6111320 - | ligand-binding /sugar binding domain-containing protein MSMEG_6045 6113341 - 6112469 - | ABC heavy metal transporter, inner membrane subunit TERM 2324 6112868 - 6112906 + g 70 -15.3 -2.78384 | gap 1, opp_overlap 6112870, overlap 6112870 6112898 GATCGCGGCGGCCAA CACGAGCAGCAGC-GCCG TGAA CGTCAGCAGCTGCTCGTG TGTGATCGCCAGCAG TERM 2325 6113135 - 6113089 - G 77 -15.6 -3.24924 | overlap 6113087 CCGCGACGCAGAACA CACCGAGGCCGAGCACCGCGGG CAG CCCGAGCAGCGCGGCGCCGGTG GCACCGGGAAGGCCG MSMEG_6046 6114120 - 6113341 - | cation ABC transporter, ATP-binding protein, putative MSMEG_6047 6115072 - 6114107 - | cation ABC transporter, periplasmic cation-binding protein, putative TERM 2326 6114340 - 6114323 - G 71 -2.5 -4.60487 | overlap 6114325 CAGCAGGGTCAAAAA CGCGTCG AAAT CGGCGGG CGACGGGTCGGTCTC MSMEG_6048 6115172 - 6116308 + | cobalamin synthesis protein/P47K TERM 2327 6116346 - 6116315 - T 100 -23 -3.28912 | opp_overlap 6116316, overlap 6116316 GCACACTGATACGAA TCCGGCGCCCGTCC GGAT GGACGGGCGCCGGT TGTTCGGACGGCTAC TERM 2328 6116345 - 6116316 - T 100 -26.5 -2.57026 | opp_overlap 6116316, overlap 6116315 CACACTGATACGAAT CCGGCGCCCGTCC GGAT GGACGGGCGCCGG TTGTTCGGACGGCTA TERM 2329 6116316 - 6116345 + T 100 -26.5 -3.61715 | opp_overlap 6116316 6116315 CACACTGATACGAAT CCGGCGCCCGTCC GGAT GGACGGGCGCCGG TTGTTCGGACGGCTA MSMEG_6049 6117524 - 6116358 - | secreted protein MSMEG_6050 6118446 - 6117544 - | solute-binding lipoprotein MSMEG_6052 6120497 - 6121207 + | ABC transport protein, ATP-binding subunit bluB 6121140 - 6121799 + | cob(II)yrinic acid a,c-diamide reductase TERM 2330 6122230 - 6122272 + G 83 -8.2 -4.56597 | opp_overlap 6122198, overlap 6122245 CGCCGCGGTGCACGC CGTCGACCCGGCCCTGCC GGTGCTG GGCCTGCCCGGATCGGCG TTTTTCGCCGAAGCA MSMEG_6054 6121823 - 6122608 + | hypothetical protein MSMEG_6055 6122877 - 6122623 - | hypothetical protein MSMEG_6057 6124745 - 6125368 + | MspD protein MSMEG_6058 6127611 - 6125473 - | cadmium transporting P-type ATPase MSMEG_6059 6127912 - 6127628 - | hypothetical protein MSMEG_6060 6127999 - 6129036 + | permease MSMEG_6061 6129033 - 6129749 + | hypothetical protein MSMEG_6062 6130554 - 6129763 - | Fe uptake system permease MSMEG_6063 6131585 - 6130551 - | Fe uptake system integral membrane protein TERM 2331 6131215 - 6131184 - G 72 -13.8 -3.18582 | gap 1, overlap 6131153 6131151 6131185 GAGCGCACCGACGAA CGCGGCAACCGG-CA GCG TGACCAGTTGCCGCA CACCGGCCCCCGCGA MSMEG_6064 6132566 - 6131586 - | lipoprotein rpsR 6133003 - 6132746 - | ribosomal protein S18 rpsN 6133305 - 6133000 - | 30S ribosomal protein S14 rpmG 6133469 - 6133305 - | 50S ribosomal protein L33 rpmB 6133705 - 6133469 - | ribosomal protein L28 MSMEG_6069 6133794 - 6134993 + | CobW/P47K domain-containing protein rpmE2 6134990 - 6135238 + | 50S ribosomal protein L31 type B TERM 2332 6135866 - 6135909 + GF 74 -15.1 -2.64616 | GCTGATCGTCGGCAG CGCGGGCGCGGTTCCCGGC GCGCTG GCCGGGCAGCGCGCCGACG TCGTGTACCTGGGAG MSMEG_6071 6135261 - 6136205 + | metallo-beta-lactamase superfamily protein MSMEG_6072 6136154 - 6137437 + | citrate transporter MSMEG_6073 6138388 - 6137444 - | RNA methyltransferase, TrmH family protein, group 3 cysS 6139821 - 6138388 - | cysteinyl-tRNA synthetase ispF 6140342 - 6139851 - | 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase ispD 6141007 - 6140339 - | 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase TERM 2333 6140984 - 6141009 + g 71 -11.1 -3.64703 | gap 1, opp_overlap 6140975 ACCAGAGCCGGCGGC CGG-GACGACGG CAA CCGTCGCCACCG TTTACGTCCCGAACA MSMEG_6077 6141515 - 6141027 - | transcriptional regulator, CarD family protein MSMEG_6078 6141800 - 6142360 + | LpqE protein TERM 2334 6143213 - 6143231 + G 81 -10.2 -4.27316 | opp_overlap 6143202, overlap 6143215 AGAACCGGTTCGGCG CCGCCGAC GAG GTCGGCTG TTTTCAATTGCACGA TERM 2335 6143215 - 6143229 + G 74 -11.4 -3.7398 | opp_overlap 6143202, overlap 6143213 AACCGGTTCGGCGCC GCCGAC GAG GTCGGC TGTTTTCAATTGCAC radA 6142417 - 6143817 + | DNA repair protein RadA MSMEG_6080 6143853 - 6144971 + | DNA integrity scanning protein DisA MSMEG_6081 6145758 - 6144973 - | hypothetical protein MSMEG_6082 6146448 - 6145828 - | carbonic anhydrase TERM 2336 6146918 - 6146887 - g 82 -16.6 -3.25823 | gap 1 GGTGGTCGACACCAA CGTGCGCCGCGTCGT CAC ACG-CGCGGTGCACG GCGCGGCCGACGCGC TERM 2337 6147352 - 6147298 - g 82 -18 -3.01712 | gap 3, overlap 6147300 CGGCCTGGTGGAACA GACCGCCGACGGCCGGT-TCGCCCTCG CAGG CGAAGGCGAGACCGGCCG--GCCGGCC TGAGCGCGGCCTAGG TERM 2338 6147353 - 6147300 - g 82 -18.2 -3.06696 | gap 2, overlap 6147298 GCCTGGTGGAACAGA CCGCCGA-CGGCCGGT-TCGCCCTCG CAGG CGAAGGCGAGACCGGCCGGCCGGCCT GAGCGCGGCCTAGGC MSMEG_6083 6146474 - 6147355 + | base excision DNA repair protein, HhH-GPD family protein MSMEG_6085 6149445 - 6148672 - | hydrolase, alpha/beta hydrolase fold family protein MSMEG_6086 6149485 - 6149802 + | antibiotic biosynthesis monooxygenase domain-containing protein TERM 2339 6150542 - 6150502 - g 74 -13.2 -3.28712 | gap 1, overlap 6150503 GGCGGGCCTGGACAA GCTGCCGCCGGGCGCACAG ATCA CGGTGCGCACCGCGGCA-C AGCAGATGATCTCGG MSMEG_6087 6149846 - 6151165 + | beta-lactamase MSMEG_6088 6151718 - 6151170 - | phosphoglycerate mutase MSMEG_6089 6152521 - 6151715 - | hypothetical protein MSMEG_6090 6152758 - 6152546 - | hypothetical protein TERM 2340 6152933 - 6152896 - R 89 -19.3 -2.54193 | opp_overlap 6152903, overlap 6152903 CAGCATCCTAAGCCA CACAAAAGACCCCCGGT GATT ACCGGGGGTCTTCTGCA ACTCAGTGTTCACCT TERM 2341 6152903 - 6152926 + r 93 -18.2 -3.31461 | opp_overlap 6152896 6152903 CTAAGCCACACAAAA GACCCCCGGT GATT ACCGGGGGTC TTCTGCAACTCAGTG TERM 2342 6152926 - 6152903 - R 100 -18.2 -4.57474 | opp_overlap 6152903, overlap 6152896 CTAAGCCACACAAAA GACCCCCGGT GATT ACCGGGGGTC TTCTGCAACTCAGTG MSMEG_6091 6155517 - 6152971 - | negative regulator of genetic competence ClpC/mecB TERM 2343 6155769 - 6155741 - gR 100 -16.7 -4.78149 | GCCAGAAGCGAAAAA CGCCGGACCGG TGAATGC CCGGCCCGGCG TGCTGGCAACCTTCC TERM 2344 6155804 - 6155846 + Gr 72 -11.3 -3.551 | gap 2 AGTTGCCGCGTGGAA TGCGTCGATCACGTCGGCAGG AAT CCGGCCG-CG-GGTCGACACA TTGTGTCCGTTGCGG MSMEG_6092 6156130 - 6155786 - | Lsr2 protein TERM 2345 6155992 - 6156011 + Gg 84 -4.9 -5.00616 | CCCACTGCTTCAGAT CGTTGCG CAACTT CGCGGCG TTTTTTGCGGAAAGG TERM 2346 6156108 - 6156118 + Gg 72 -5.4 -4.46233 | AAATCATCGACAAGC GTGA CGG TCAC TTTCTTTGCCATTCC MSMEG_6093 6155687 - 6156166 + | hypothetical protein lysS 6157769 - 6156246 - | lysyl-tRNA synthetase MSMEG_6095 6157793 - 6159031 + | D-amino acid deaminase MSMEG_6096 6159847 - 6159032 - | pantothenate kinase panC 6160867 - 6159923 - | pantoate--beta-alanine ligase MSMEG_6098 6161811 - 6160864 - | chalcone/stilbene synthase family protein MSMEG_6099 6163442 - 6161892 - | transmembrane protein rich in alanine TERM 2347 6162865 - 6162813 - G 74 -14.7 -3.09516 | overlap 6162817 6162841 6162844 GGGCCGACGATCGAA GCCACCGTCGGCGGGCCGACGATCG AAA CCACCGTCGGCGGGCCGACGATCGA AACCACCGTCGGCGG TERM 2348 6162861 - 6162817 - G 79 -18.5 -2.55544 | overlap 6162813 6162841 6162844 CGACGATCGAAGCCA CCGTCGGCGGGCCGACGATCG AAA CCACCGTCGGCGGGCCGACGA TCGAAACCACCGTCG TERM 2349 6162891 - 6162841 - G 78 -12.4 -3.68351 | overlap 6162817 6162813 6162844 GGCCGACGATCGAAA CCACCGTCGGCGGGCCGACGATCG AAA CCACCGTCGGCGGGGCGACGATCG AAACTCCACTCGTCC TERM 2350 6163034 - 6163057 + g 90 -17.4 -3.53012 | CGTGGACACGGCCCG CCGGCCGCGC GGCG GCGCGGTCGG TTTCCAGCGCGGGCC TERM 2351 6163589 - 6163621 + r 85 -16.3 -3.14463 | opp_overlap 6163587 6163588 GACCGGAGCACAACG TCATTCGGGGACGGC ATC GCCGTCCTCGGGTGG TTCCTCCGGCGACTT MSMEG_6100 6164065 - 6163589 - | hypothetical protein folK 6164601 - 6164065 - | 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase TERM 2352 6164252 - 6164233 - G 72 -9.2 -3.99324 | CGGGATCAGCACAAA CGCCCGCA GGTG CGCGAGCG GGTGCGGCAGCGTCA folB 6164969 - 6164598 - | dihydroneopterin aldolase folP 6165819 - 6164962 - | dihydropteroate synthase TERM 2353 6165491 - 6165533 + g 77 -17.6 -2.65264 | ACGTCGTTGACGATG TGCGCGCCCGCTTCGAGCGC CGC GCGCGCGACGTCGGCGTGCA TGGTGTCGATGCTGA folE 6166427 - 6165816 - | GTP cyclohydrolase I MSMEG_6105 6168759 - 6166447 - | cell division protein TERM 2354 6169241 - 6169195 - g 74 -13.6 -3.25719 | overlap 6169230 CTACGACATCACCAA GCTCACCGGCGACGTGGTCGGG CTG CTCGACGACATCGGCGCCGAGC ACGCGGCCGTGATCG MSMEG_6106 6168956 - 6169927 + | epoxide hydrolase MSMEG_6107 6169927 - 6171114 + | limonene 1,2-monooxygenase MSMEG_6108 6171114 - 6172130 + | zinc-binding dehydrogenase MSMEG_6109 6172152 - 6172883 + | LpqG protein hpt 6173469 - 6172888 - | hypoxanthine phosphoribosyltransferase tilS 6174488 - 6173520 - | tRNA(Ile)-lysidine synthetase MSMEG_6112 6175540 - 6174467 - | hypothetical protein dacB 6176979 - 6175537 - | D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase ppa 6177063 - 6177551 + | inorganic pyrophosphatase MSMEG_6116 6177612 - 6178142 + | putative OHCU decarboxylase MSMEG_6115 6179122 - 6178118 - | phosphoglycerate dehydrogenase MSMEG_6117 6180477 - 6179128 - | glucarate dehydratase MSMEG_6118 6181303 - 6180503 - | IclR-family protein transcriptional regulator MSMEG_6119 6182027 - 6181305 - | hypothetical protein MSMEG_6120 6183022 - 6182024 - | peptide transport system ATP-binding protein MSMEG_6121 6184046 - 6183015 - | dipeptide transport ATP-binding protein DppD MSMEG_6122 6185029 - 6184043 - | ABC transporter, membrane spanning protein MSMEG_6123 6185967 - 6185038 - | ABC transporter, membrane spanning protein MSMEG_6124 6187557 - 6185995 - | putative ABC transporter periplasmic oligopeptide-binding protein MSMEG_6126 6187851 - 6188864 + | D-isomer specific 2-hydroxyacid dehydrogenase MSMEG_6125 6189787 - 6188858 - | transcriptional regulatory protein MSMEG_6127 6190044 - 6190403 + | anti-anti-sigma factor MSMEG_6129 6190437 - 6190883 + | hypothetical protein MSMEG_6128 6191315 - 6190869 - | two-component system response regulator TERM 2355 6191332 - 6191357 + r 93 -14 -4.07133 | TGTTGTTTCCTTCCA GCTGGGCGTC GGTGAG GACGCCCGGC TTGTTTGTGGGCATG MSMEG_6130 6192889 - 6191312 - | two-component sensor protein TERM 2356 6191927 - 6191947 + g 70 -8.3 -3.87815 | opp_overlap 6191920 GGCGAAACCGATGTA CTCGACG CCGCGCT CGTCGAG TTTGTCGCCATAACG MSMEG_6131 6194094 - 6192886 - | magnesium or manganese-dependent protein phosphatase MSMEG_6132 6195596 - 6194325 - | glucarate dehydratase TERM 2357 6195191 - 6195159 - G 78 -16.1 -3.08133 | overlap 6195146 CAGGTAGGCACTGAA CGGCACGGCGTCGCG CAC CGCGCCGCCGAGCAG GTCCGACACCGGCCT MSMEG_6133 6196530 - 6195607 - | 5-dehydro-4-deoxyglucarate dehydratase MSMEG_6134 6198159 - 6196561 - | NADP-dependent fatty aldehyde dehydrogenase MSMEG_6135 6198706 - 6198302 - | hypothetical protein MSMEG_6136 6199776 - 6198808 - | membrane protein, TerC family protein TERM 2358 6203909 - 6203887 - g 100 -16.2 -4.15222 | ATGTTCGGCAAGAAA CGCGCCGCCG CCG CGTCGGCGCG CAAGAAGACGACAGA MSMEG_6137 6200005 - 6203940 + | non-ribosomal peptide synthetase MSMEG_6138 6203937 - 6205274 + | metallopeptidase MSMEG_6140 6205271 - 6206551 + | membrane protein MSMEG_6139 6207134 - 6206541 - | putative HTH-type transcriptional regulator MSMEG_6141 6208917 - 6207136 - | N-acyl-D-glutamate amidohydrolase MSMEG_6142 6209926 - 6208979 - | nucleoside-diphosphate-sugar epimerase MSMEG_6143 6209977 - 6211740 + | hypothetical protein MSMEG_6144 6213193 - 6211742 - | PE family protein MSMEG_6145 6213505 - 6214221 + | hypothetical protein TERM 2359 6214778 - 6214766 - g 71 -10.5 -3.75817 | overlap 6214764 CTCCGACAACAAACA CGGCG CGA CGCCG ACCTGGAAGAAAACG MSMEG_6146 6214302 - 6215708 + | ISMsm3, transposase MSMEG_6147 6215883 - 6216974 + | hypothetical protein MSMEG_6148 6217061 - 6218383 + | IS1096, tnpA protein MSMEG_6149 6219092 - 6218391 - | IS1096, tnpR protein MSMEG_6150 6219676 - 6220032 + | 4-carboxymuconolactone decarboxylase MSMEG_6151 6220029 - 6220904 + | alpha/beta hydrolase fold-1 MSMEG_6153 6222335 - 6221127 - | DNA polymerase III subunit delta' TERM 2360 6221388 - 6221415 + g 70 -12 -3.34233 | overlap 6221366 GGCCCGGTCCAGCGC GTCACGCGAGGC CCGG GTCTGGCGTGAC TTCTGCCGCTTCTCC MSMEG_6154 6222417 - 6224108 + | adenylate cyclase, family protein 3 MSMEG_6155 6224166 - 6225488 + | IS1096, tnpA protein MSMEG_6156 6226197 - 6225496 - | IS1096, tnpR protein topA 6229170 - 6226360 - | DNA topoisomerase I TERM 2361 6227729 - 6227765 + g 100 -20.9 -3.57263 | GGCAGGCGGCTCTCG GCGTCGTCGGACTCGCC GCC GGCGAGTTCGTCGATGC TTTCGACGTAGGCCT MSMEG_6158 6229867 - 6229274 - | hypothetical protein MSMEG_6159 6230166 - 6229963 - | hypothetical protein TERM 2362 6230039 - 6230066 + g 82 -14.2 -3.727 | gap 1 ACCTTCTGGTTTTCC TCCAGGGT-GCGG AAG CCGCTGCCCTGGA TTTCCGTGTAGTGGA TERM 2363 6232552 - 6232573 + G 70 -12.3 -3.25823 | GACCGCTGTGGGTCC GGTCGACGG ATTG CCGTCGATC TTCGTCTACGACGGA MSMEG_6160 6230468 - 6232798 + | ATP-dependent rna helicase, dead/deah box family protein MSMEG_6161 6233070 - 6234392 + | IS1096, tnpA protein MSMEG_6162 6235101 - 6234400 - | IS1096, tnpR protein MSMEG_6163 6235347 - 6236363 + | hypothetical protein MSMEG_6164 6236774 - 6236448 - | hypothetical protein MSMEG_6166 6236388 - 6236831 + | hypothetical protein MSMEG_6165 6237345 - 6236785 - | hypothetical protein TERM 2364 6237309 - 6237322 + g 82 -3.7 -5.01042 | AAATACTTGAATCAC CCTGC CCAT GCTGG TTTTTCCTTTCCGTT MSMEG_6167 6237920 - 6237351 - | type II secretion system protein F MSMEG_6168 6238549 - 6237917 - | type II secretion system protein F TERM 2365 6238123 - 6238065 - GH 80 -15.3 -3.05844 | TGCCCCAGCGCAATA CCGGCCAATGGCAGTCCCGCG-AGCACCA GCG CGGTGGTGCGCGGACCCGCCA-TGGCCGC ACGCACACGTGCCGA TERM 2366 6238694 - 6238667 - gR 77 -11.2 -3.7732 | gap 1 GGGCCAGATCAACAA CGCCGCCGC-CAG GGC CAGCGCGGCGACG CTCACCGCATCCCCC MSMEG_6170 6238524 - 6238718 + | hypothetical protein MSMEG_6169 6239853 - 6238696 - | type II/IV secretion system protein MSMEG_6171 6240800 - 6239850 - | hypothetical protein MSMEG_6172 6241332 - 6240784 - | hypothetical protein TERM 2367 6241173 - 6241136 - G 93 -13.5 -4.17048 | TTCCCTGGAAAAGAA GACGACCCCCGCC AGGGGGGGAGGA GGCGGAGGTCGTC GCGTATCAGCCCCGG MSMEG_6173 6241372 - 6242253 + | morphological differentiation-associated protein TERM 2368 6242625 - 6242663 + T 100 -21.6 -4.72007 | overlap 6242626 TCGGGGTCCGTGCTA GCGGGCGGCGAACCGGAC ATT GTCCGGGACGCCGCCCGA TTTCTTTTGCTGGAC TERM 2369 6242626 - 6242662 + T 100 -25.1 -3.42481 | overlap 6242625 CGGGGTCCGTGCTAG CGGGCGGCGAACCGGAC ATT GTCCGGGACGCCGCCCG ATTTCTTTTGCTGGA MSMEG_6174 6243474 - 6242692 - | transcriptional regulator, IclR family protein TERM 2370 6243232 - 6243217 - G 72 -3.2 -4.57073 | gap 1, overlap 6243219 CAGCTCCTCCAAAAA CG-GGCG GGC CACCACG GGCAACGGATTGCCG MSMEG_6175 6243569 - 6244549 + | 2-keto-3-deoxy-galactonokinase MSMEG_6176 6244546 - 6245172 + | 2-dehydro-3-deoxy-6-phosphogalactonate aldolase MSMEG_6177 6245169 - 6246317 + | galactonate dehydratase TERM 2371 6246739 - 6246721 - g 71 -10.2 -3.7282 | opp_overlap 6246724 GTATCCCATCAACAA CCGCGTCG CGA CGACGTGG TTCCCCGAGCGTGAA MSMEG_6178 6246323 - 6247654 + | D-galactonate transporter MSMEG_6179 6247672 - 6250494 + | acetyl-coenzyme A synthetase TERM 2372 6250507 - 6250545 + T 100 -27.6 -4.11692 | opp_overlap 6250496 TAGACCCTCCGGCAT CGGAGCTGCCCGATCCCC TCA GGGGATCGGGCAGTTCTG TTTTCCGGGTGGCTA MSMEG_6180 6251238 - 6250558 - | secreted protein MSMEG_6181 6251857 - 6251348 - | hypothetical protein MSMEG_6182 6251411 - 6251920 + | hypothetical protein TERM 2373 6252188 - 6252178 - g 70 -8.2 -3.91897 | overlap 6252179 GGCGGCAGCGACAAA CCGC CCC GCGG CTACGACGGCTGGAC MSMEG_6184 6251920 - 6252870 + | hydrolase, alpha/beta fold family protein MSMEG_6183 6254050 - 6252860 - | serine protease MSMEG_6185 6254838 - 6254050 - | NTP pyrophosphohydrolase MSMEG_6186 6255497 - 6254850 - | hypothetical protein nth 6256291 - 6255512 - | endonuclease III MSMEG_6188 6256441 - 6256734 + | hypothetical protein MSMEG_6189 6256824 - 6257498 + | transcriptional regulator, Crp/Fnr family protein MSMEG_6190 6258377 - 6257583 - | metallo-beta-lactamase family protein MSMEG_6191 6258850 - 6258374 - | translation initiation inhibitor MSMEG_6192 6259008 - 6258847 - | hypothetical protein MSMEG_6193 6259056 - 6260090 + | anion-transporting ATPase TERM 2374 6260240 - 6260184 - g 83 -12.2 -4.07568 | gap 2 GCGGTGTCGGCAAAA CCACGACCGCCGCGGCGATGGCGCTGCG GGC CGCCGAGT-ACGGCCGCA-CGGTCGTGG TCCTCACCATCGACC TERM 2375 6260521 - 6260501 - g 77 -11.1 -3.92075 | ATGGCGATGGAGAAA CTCGGGCAG TTG CTGTCCGAG GACAAGTGGGATCTG MSMEG_6195 6260087 - 6261217 + | ion-transporting ATPase MSMEG_6194 6262032 - 6261214 - | beta-lactamase related protein MSMEG_6196 6263446 - 6262025 - | gaba permease MSMEG_6197 6264839 - 6263460 - | diaminopimelate decarboxylase MSMEG_6198 6266579 - 6264963 - | DNA-binding protein, putative TERM 2376 6266704 - 6266738 + r 86 -12.7 -3.87815 | opp_overlap 6266683 6266705, overlap 6266705 GAAGCGTGCCCGCAA ACGAACGAGCCCGCC TGCTC GGCGGGCCCGGTCGG TTTCTCAGACTGCGC TERM 2377 6266737 - 6266705 - R 93 -18.4 -3.53343 | opp_overlap 6266704 6266705, overlap 6266683 AAGCGTGCCCGCAAA CGAACGAGCCCGCC TGCTC GGCGGGCCCGGTCG GTTTCTCAGACTGCG TERM 2378 6266705 - 6266737 + r 81 -16.2 -2.92475 | opp_overlap 6266683 6266705, overlap 6266704 AAGCGTGCCCGCAAA CGAACGAGCCCGCC TGCTC GGCGGGCCCGGTCG GTTTCTCAGACTGCG MSMEG_6199 6267099 - 6266743 - | transcription factor WhiB MSMEG_6200 6267377 - 6267234 - | hypothetical protein TERM 2379 6267294 - 6267317 + g 72 -8.9 -4.08216 | gap 1 GGCCGTGCAGTCTGC CCCCAC-AGG TGGCC CCTCGTGGGG TTTTGCCCGAGGTAG TERM 2380 6268270 - 6268301 + G 78 -12.2 -3.79906 | gap 1, opp_overlap 6268232 6268265 AGCCCAACGAGCTGC CGCGCGGCTGCATCG CCG CGG-GCGACCGCGCG TTCTTCTGCGACTAC MSMEG_6201 6267483 - 6269849 + | transglycosylase MSMEG_6202 6269949 - 6270935 + | secreted protein MSMEG_6203 6270944 - 6272041 + | cysteine synthase/cystathionine beta-synthase family protein TERM 2381 6272243 - 6272278 + F 82 -15.6 -3.12351 | gap 1 GACACCGAGATTGCA GCCAGGGACAGG-ATCG CCG CGATTTTTGTCCCTGGC TTCAATCTCGGCGCG TERM 2382 6272486 - 6272450 - f 88 -16 -3.31144 | gap 1, opp_overlap 6272454, overlap 6272454 CCCCGACTCGCAGAA GCAAGGCCCTG-ACTGG ATTC CCAGTTCAGGGCCTTTC GCTATGTGGGCCCCA TERM 2383 6272454 - 6272482 + F 90 -15.4 -3.74077 | gap 1, opp_overlap 6272450 6272454 GACTCGCAGAAGCAA GGCCCTG-ACTGG ATTC CCAGTTCAGGGCC TTTCGCTATGTGGGC TERM 2384 6272482 - 6272454 - f 90 -15.4 -3.44622 | gap 1, opp_overlap 6272454, overlap 6272450 GACTCGCAGAAGCAA GGCCCTG-ACTGG ATTC CCAGTTCAGGGCC TTTCGCTATGTGGGC MSMEG_6205 6272624 - 6272785 + | hypothetical protein MSMEG_6206 6274021 - 6272798 - | serine/threonine protein kinase PksC TERM 2385 6272829 - 6272839 + g 72 -8.2 -3.96892 | overlap 6272829 CCTTTCGGACCTTTC GGGC CGT GCCC TTTCTCGTGGCCCTT MSMEG_6207 6274084 - 6274581 + | hypothetical protein MSMEG_6208 6274619 - 6275416 + | palmitoyl-CoA hydrolase MSMEG_6209 6275481 - 6275699 + | hypothetical protein MSMEG_6210 6275706 - 6276398 + | hypothetical protein MSMEG_6211 6276556 - 6276404 - | hypothetical protein MSMEG_6212 6276681 - 6277265 + | hemerythrin HHE cation binding domain-containing protein TERM 2386 6277319 - 6277280 - T 93 -19.4 -3.11173 | opp_overlap 6277281 6277284, overlap 6277271 6277284 ACATAACTGACCCAA CGAATCAGCGGCCGGTAC CGAG GTACCGGCTGCTGATTCT TGTCGAATTACGTTG TERM 2387 6277281 - 6277318 + T 100 -25.1 -3.37236 | opp_overlap 6277280 6277271 6277284, overlap 6277284 CATAACTGACCCAAC GAATCAGCGGCCGGTAC CGAG GTACCGGCTGCTGATTC TTGTCGAATTACGTT TERM 2388 6277315 - 6277284 - T 93 -18.8 -3.38088 | opp_overlap 6277281 6277284, overlap 6277280 6277271 AACTGACCCAACGAA TCAGCGGCCGGTAC CGAG GTACCGGCTGCTGA TTCTTGTCGAATTAC TERM 2389 6277284 - 6277315 + T 100 -21 -3.82191 | opp_overlap 6277284 6277280 6277271, overlap 6277281 AACTGACCCAACGAA TCAGCGGCCGGTAC CGAG GTACCGGCTGCTGA TTCTTGTCGAATTAC MSMEG_6213 6278220 - 6277327 - | manganese containing catalase MSMEG_6214 6278760 - 6278296 - | GatB/Yqey domain-containing protein MSMEG_6215 6279496 - 6278771 - | hypothetical protein TERM 2390 6280064 - 6280100 + G 80 -15.8 -3.23042 | gap 1 GGTCATCGGCCTGAT CGCGGCGGCCGGCGCCG TGGG CGGTGCCG-TCGCGGCG TTCGTGATGGGTGTT MSMEG_6216 6279519 - 6280592 + | integral membrane protein MSMEG_6217 6280594 - 6281244 + | integral membrane protein MSMEG_6218 6281226 - 6282347 + | secreted protein MSMEG_6219 6282344 - 6283315 + | ATPase family protein associated with various cellular activities MSMEG_6220 6283315 - 6284637 + | lipoprotein MSMEG_6221 6285634 - 6284642 - | integral membrane protein TERM 2391 6285541 - 6285568 + g 85 -16.2 -3.55548 | opp_overlap 6285523, overlap 6285548 CGACGAGTTCGTCCA CCTCGGCGCCGG TGAG CCGGCGCCGGCG TTTCACCAGCTGTTC MSMEG_6222 6285668 - 6286591 + | integral membrane protein MSMEG_6223 6286641 - 6287210 + | TetR family protein transcriptional repressor LfrR TERM 2392 6287575 - 6287608 + G 85 -18.1 -3.21099 | CGGGTTCGCGGTGGT CTCGGCGCTGGCGGC CTTC GCCCCGAGCGCCGAG TTGCTGGTGGGAGCG TERM 2393 6288014 - 6287964 - g 79 -11.8 -4.07568 | gap 3, opp_overlap 6287943 6287982 TGTGGGCGGTCAAAA CCGCGGCGCACGACGGTCTGTCGGC GGCG GCCG-CGG-CCG-CGTTCGCCGTGG GCATCGTCTCGGGTG MSMEG_6225 6287282 - 6288796 + | proton antiporter efflux pump MSMEG_6224 6290105 - 6288786 - | retinal pigment epithelial membrane protein MSMEG_6226 6290191 - 6290715 + | transcriptional regulator MSMEG_6227 6290798 - 6291538 + | transcriptional regulator, PadR family protein MSMEG_6228 6291559 - 6292239 + | hypothetical protein glpK 6293760 - 6292243 - | glycerol kinase MSMEG_6231 6293807 - 6294562 + | hypothetical protein MSMEG_6230 6295710 - 6294559 - | acyltransferase TERM 2394 6295108 - 6295078 - G 82 -16.8 -3.37796 | CGCGACCAGCCACAA CGGGCTGACCGCGC CGA GCACCGCCAGCCCG CCGAGTAGCCGCCAC katA 6297402 - 6295741 - | catalase KatA MSMEG_6233 6298297 - 6297491 - | hypothetical protein TERM 2395 6298320 - 6298335 + H 72 -3.2 -4.63218 | GTCTACCCATCGGCT TCGGGA TTAT TCGCGA TTTTGTTGCGCAAAC MSMEG_6234 6298376 - 6299845 + | CBS domain-containing protein MSMEG_6235 6299856 - 6300536 + | thiopurine S-methyltransferase (tpmt) superfamily protein TERM 2396 6300563 - 6300594 + F 86 -15.2 -3.55761 | GCTCGACCGTGCACT GAGGGCGAGATTTC GGCT GAGATCCCGCCCTC TTTGCACGCTCGATG MSMEG_6237 6300742 - 6301623 + | hypothetical protein MSMEG_6236 6302270 - 6301620 - | two-component system, regulatory protein MSMEG_6238 6303418 - 6302267 - | putative two-component system sensor kinase TERM 2397 6303402 - 6303376 - G 86 -13.1 -4.11216 | gap 1, opp_overlap 6303389 6303390 CGGCGAGCGCCAAAA GCACCCA-CTCG GCGT CGAGGTGGGTGC GGGCCGCTTCGGCCA MSMEG_6239 6304816 - 6303617 - | 1,3-propanediol dehydrogenase MSMEG_6240 6306446 - 6304953 - | hypothetical protein TERM 2398 6306149 - 6306198 + g 78 -15.8 -3.08996 | overlap 6306152 6306165 CGTCGATCTCGAGGT GGTCG-GGCAGACCCGAGCCGGTG TGGG CAC-GGCTTGGGTCTGCCACGTCG TGTTCGGTGACGATC TERM 2399 6306152 - 6306195 + g 83 -20.5 -2.75992 | overlap 6306149 6306165 CGATCTCGAGGTGGT CG-GGCAGACCCGAGCCGGTG TGGG CAC-GGCTTGGGTCTGCCACG TCGTGTTCGGTGACG MSMEG_6241 6307501 - 6306443 - | ATPase associated with various cellular activities, AAA-5 MSMEG_6242 6308803 - 6307532 - | alcohol dehydrogenase, iron-containing MSMEG_6243 6309448 - 6308975 - | response regulator receiver domain-containing protein MSMEG_6244 6309530 - 6310090 + | TetR-family protein transcriptional regulator MSMEG_6245 6311297 - 6310092 - | chloramphenicol resistance protein MSMEG_6246 6312602 - 6311487 - | pyridoxal-phosphate-dependent transferase MSMEG_6247 6313564 - 6312599 - | hypothetical protein MSMEG_6248 6314259 - 6313576 - | hypothetical protein MSMEG_6249 6315545 - 6314259 - | hypothetical protein MSMEG_6250 6316813 - 6315542 - | glutamate--cysteine ligase MSMEG_6251 6317583 - 6316930 - | hypothetical protein MSMEG_6252 6318017 - 6317589 - | hypothetical protein TERM 2400 6318208 - 6318166 - R 84 -12.7 -3.78409 | gap 1, opp_overlap 6318171 6318172, overlap 6318172 TCAACCGAATTGAAA TGAAGAGCCCCGGCCACCGA GGGG TCG-TGGCCGGGGCATTTCT TCGGGCTGCAGATGT TERM 2401 6318171 - 6318203 + r 95 -15.6 -4.16842 | gap 1, opp_overlap 6318166 6318172, overlap 6318172 CGAATTGAAATGAAG AGCCCCGGCCACCGA GGGG TCG-TGGCCGGGGCA TTTCTTCGGGCTGCA TERM 2402 6318202 - 6318172 - R 100 -19.1 -3.3568 | gap 1, opp_overlap 6318171 6318172, overlap 6318166 GAATTGAAATGAAGA GCCCCGGCCACCGA GGGG TCG-TGGCCGGGGC ATTTCTTCGGGCTGC TERM 2403 6318172 - 6318202 + r 93 -19.1 -3.09784 | gap 1, opp_overlap 6318172 6318166, overlap 6318171 GAATTGAAATGAAGA GCCCCGGCCACCGA GGGG TCG-TGGCCGGGGC ATTTCTTCGGGCTGC MSMEG_6253 6318691 - 6318227 - | fur family protein transcriptional regulator MSMEG_6254 6319214 - 6318744 - | hypothetical protein MSMEG_6255 6320461 - 6319355 - | hypothetical protein TERM 2404 6319971 - 6319981 + g 72 -8.2 -4.07568 | overlap 6319950 GGCCAACTGCTCTTG GCCG CAT CGGC TTTTACCAGGCGCGA asd 6321513 - 6320473 - | aspartate-semialdehyde dehydrogenase MSMEG_6257 6322780 - 6321515 - | aspartate kinase MSMEG_6258 6322878 - 6323498 + | nitroreductase family protein TERM 2405 6324177 - 6324150 - g 79 -14.8 -3.25823 | gap 1 CGCGGTGCACATCAA CGCCGGCGCG-GC CGC GCTCGCGCTGGCG ATCGTGCTGGGCAAG amt 6323614 - 6324864 + | ammonium transporter TERM 2406 6324878 - 6324928 + F 89 -16.8 -3.18681 | gap 1 GATCCCGTTGATGAC TCCCCGG-TCCGGCCACCGCAGA AGGTTG TCCGCGGCGTCCGGGTCCGGGGA TTCGTCGGCTTGCCG glnT 6324998 - 6326302 + | glutamine synthetase, type III MSMEG_6261 6326334 - 6327203 + | glutamine amidotransferase, class II MSMEG_6262 6327191 - 6327886 + | FwdC/FmdC family protein MSMEG_6263 6327886 - 6329226 + | glutamate synthase family protein MSMEG_6264 6329223 - 6330410 + | putative oxidoreductase MSMEG_6265 6330437 - 6331087 + | transcriptional regulator MSMEG_6266 6331259 - 6332059 + | thiocyanate hydrolase beta subunit MSMEG_6267 6332056 - 6332766 + | thiocyanate hydrolase gamma subunit MSMEG_6268 6332779 - 6333120 + | putative ScnB protein mgtE 6333151 - 6334521 + | magnesium transporter MSMEG_6270 6334762 - 6334613 - | hypothetical protein TERM 2407 6335887 - 6335855 - gH 70 -14.1 -2.57468 | overlap 6335837 6335854 CTGGACCAGATGAAG GTCGACGCCGACGCC GCG GGCGCCGACATGGAC GACATCCTGTGGCAG leuA 6334688 - 6336496 + | 2-isopropylmalate synthase TERM 2408 6336506 - 6336544 + FH 100 -21 -3.55071 | overlap 6336507 6336510 GCCTGATTTCACTTC TGCCGTCGGCGCCGTTGC CTC GCAACGGCGCCGACTCCG TTTCCCGCCATGTAC TERM 2409 6336507 - 6336543 + FH 100 -22.3 -2.72829 | overlap 6336506 6336510 CCTGATTTCACTTCT GCCGTCGGCGCCGTTGC CTC GCAACGGCGCCGACTCC GTTTCCCGCCATGTA TERM 2410 6336510 - 6336540 + FH 100 -27 -2.64274 | overlap 6336507 6336506 GATTTCACTTCTGCC GTCGGCGCCGTTGC CTC GCAACGGCGCCGAC TCCGTTTCCCGCCAT MSMEG_6272 6336680 - 6339892 + | NAD-glutamate dehydrogenase TERM 2411 6339955 - 6339919 - f 87 -17.2 -2.80935 | opp_overlap 6339919 6339921, overlap 6339921 ATCTGATTCACGACA CACTGCGGCCGGCTCG GCATA CGGGCCGGTCGCAGCG TTTTTCGTGGTTGAC TERM 2412 6339919 - 6339955 + F 100 -19.4 -4.81083 | opp_overlap 6339919 6339921, overlap 6339921 ATCTGATTCACGACA CACTGCGGCCGGCTCG GCATA CGGGCCGGTCGCAGCG TTTTTCGTGGTTGAC TERM 2413 6339921 - 6339953 + F 93 -20.6 -2.68033 | opp_overlap 6339919 6339921, overlap 6339919 CTGATTCACGACACA CTGCGGCCGGCTCG GCATA CGGGCCGGTCGCAG CGTTTTTCGTGGTTG TERM 2414 6339953 - 6339921 - f 81 -16.2 -2.95298 | opp_overlap 6339921 6339919, overlap 6339919 CTGATTCACGACACA CTGCGGCCGGCTCG GCATA CGGGCCGGTCGCAG CGTTTTTCGTGGTTG MSMEG_6273 6340016 - 6340402 + | integral membrane protein MSMEG_6274 6340183 - 6340407 + | hypothetical protein MSMEG_6275 6341422 - 6340409 - | DNA polymerase III subunit epsilon MSMEG_6276 6341496 - 6342719 + | mur ligase family protein MSMEG_6277 6342716 - 6343435 + | cobyric acid synthase MSMEG_6278 6344236 - 6343526 - | metallo-beta-lactamase superfamily protein, putative recR 6344920 - 6344309 - | recombination protein RecR MSMEG_6280 6345239 - 6344931 - | hypothetical protein MSMEG_6281 6345388 - 6346182 + | N-acetylmuramoyl-L-alanine amidase MSMEG_6282 6346627 - 6346190 - | KanY protein TERM 2415 6347598 - 6347622 + G 73 -12.7 -3.4072 | GATCCGCAGGTTCTG GCCGCGGCGGC TGC GCCGCAGCAGC TTCTACTGGAAGCTG MSMEG_6283 6346717 - 6348117 + | FAD binding domain-containing protein MSMEG_6284 6348114 - 6349427 + | cyclopropane-fatty-acyl-phospholipid synthase TERM 2416 6349441 - 6349493 + T 93 -18.5 -3.30159 | gap 2, opp_overlap 6349431 6349438 6349448, overlap 6349445 AGCAACCACGAACCG CGAACCAGGGGCCTGGCGC--CGAC TACCC GTCGATGCGCCGGGCCCCGAGTTCG TTCTGCAGCAGTTCG TERM 2417 6349445 - 6349489 + T 75 -12.1 -3.44146 | gap 2, opp_overlap 6349438 6349448, overlap 6349441 ACCACGAACCGCGAA CCAGGGGCCTGGCGC--CGAC TACCC GTCGATGCGCCGGGCCCCGAG TTCGTTCTGCAGCAG TERM 2418 6349486 - 6349448 - T 75 -14.6 -2.73721 | gap 2, opp_overlap 6349445 6349441, overlap 6349438 ACGAACCGCGAACCA GGGGCCTGGCGC--CGAC TACCC GTCGATGCGCCGGGCCCC GAGTTCGTTCTGCAG MSMEG_6285 6351460 - 6349463 - | DNA polymerase III subunits gamma and tau MSMEG_6286 6352773 - 6351487 - | aspartate transaminase TERM 2419 6353780 - 6353746 - g 72 -13.5 -3.15249 | overlap 6353759 GACAGCGCGGACGAA CCGTCGGACGACACC GCTGT GGAGGCGTCCGACGA GGACGCCGACCAGAC MSMEG_6288 6353155 - 6354036 + | hypothetical protein MSMEG_6289 6354081 - 6355103 + | trypsin TERM 2420 6355762 - 6355787 + G 82 -16.1 -3.33671 | GACCGGGCGCATGGT GGTCGCGGCCC GCGC GGGCCGCGAGC TTCTGGGCTCGGTGT MSMEG_6290 6355142 - 6356653 + | putative DNA-binding protein MSMEG_6291 6356801 - 6358051 + | D-amino-acid dehydrogenase TERM 2421 6358105 - 6358147 + F 100 -19.8 -3.33492 | overlap 6358106 CGGAACGGGCCTCTC GCGTCGTCAGGGGCGGTGCG CAA CGTCCCGCCCCTGACGACAA TTCTCAGCTACCTCA TERM 2422 6358106 - 6358146 + F 100 -23.3 -2.59881 | overlap 6358105 GGAACGGGCCTCTCG CGTCGTCAGGGGCGGTGCG CAA CGTCCCGCCCCTGACGACA ATTCTCAGCTACCTC MSMEG_6292 6358172 - 6358645 + | transcription elongation factor GreA MSMEG_6293 6358686 - 6359258 + | transcriptional regulatory protein MSMEG_6294 6359407 - 6360657 + | caib/baif family protein TERM 2423 6361512 - 6361484 - g 71 -2.2 -4.57073 | opp_overlap 6361503, overlap 6361486 6361501 GACCCTGGCCAAAAA CGGTGCCGGCGA ATCGA CCGCGCGCAACG GCATTCTCATCGCGT MSMEG_6295 6360654 - 6362012 + | shikimate transporter TERM 2424 6362371 - 6362353 - g 72 -4.4 -4.57073 | CATGTGCGCCAAAAA GCGTCCCA CGT TGTGCCGC AACAAGATCCCGTAC MSMEG_6296 6362009 - 6363139 + | 5-exo-alcohol dehydrogenase MSMEG_6297 6363136 - 6364671 + | aldehyde dehydrogenase MSMEG_6298 6364671 - 6365567 + | malyl-CoA lyase MSMEG_6299 6365564 - 6366517 + | glyoxylate reductase TERM 2425 6366772 - 6366747 - g 76 -13.3 -3.40403 | GCTCGTCGAGTACAA GCGTCATCACG GGCA CGTGGTGACGC GGTACTCGATCCGAC MSMEG_6300 6366544 - 6367221 + | transcriptional regulator, GntR family protein ligD 6368289 - 6367237 - | DNA polymerase LigD polymerase subunit ligC 6369332 - 6368286 - | ATP-dependent DNA ligase ligC 6369392 - 6370456 + | ATP-dependent DNA ligase MSMEG_6303 6371685 - 6370453 - | para-nitrobenzyl esterase TERM 2426 6371341 - 6371376 + g 74 -12.4 -3.57561 | overlap 6371343 GACGTTGACCACCAC CACGTCGCCGTGGCGC GCGA GCGGCGCGGCGTCGTA TTTGCGCGATTCGCC TERM 2427 6371343 - 6371374 + g 79 -15 -3.36569 | overlap 6371341 CGTTGACCACCACCA CGTCGCCGTGGCGC GCGA GCGGCGCGGCGTCG TATTTGCGCGATTCG MSMEG_6305 6371770 - 6372138 + | hypothetical protein gltX 6372152 - 6373030 + | glutamyl-Q tRNA(Asp) synthetase TERM 2428 6373192 - 6373177 - g 75 -6.1 -4.40804 | GACGAGCCGATAAAA GCAGC CGGTGT GCTGC GTGTGGGCACCGAAG MSMEG_6307 6373123 - 6374550 + | glutamine-binding periplasmic protein/glutamine transport system permease protein MSMEG_6309 6374547 - 6375320 + | ABC transporter, ATP-binding protein MSMEG_6308 6375430 - 6375317 - | hypothetical protein MSMEG_6310 6376752 - 6375427 - | 4-hydroxybutyrate coenzyme A transferase lys1 6377996 - 6376779 - | saccharopine dehydrogenase MSMEG_6312 6379317 - 6378073 - | cytochrome P450 107B1 tgt 6380595 - 6379351 - | queuine tRNA-ribosyltransferase MSMEG_6315 6380664 - 6381155 + | lipoprotein LpqH MSMEG_6314 6382050 - 6381142 - | haloalkane dehalogenase TERM 2429 6381957 - 6381903 - G 100 -15.8 -4.67982 | gap 3 CCCCATGCAACAAAA GGACGGGTTCGGCGTGCGCC-GGGCCG TCCT CGACCCAGGC-CAC-CCGCAGCCGTCC GCCTTCCCCGTCGTC MSMEG_6316 6382186 - 6382716 + | lipoprotein LpqH TERM 2430 6382808 - 6382832 + F 74 -10.7 -3.77303 | AACGACGCGGTGTGA TGTGCTTGGCC CAT GGCCAAGCGAA TTCTGTGTTTCGGTG MSMEG_6317 6382820 - 6383470 + | lipolytic enzyme, G-D-S-L TERM 2431 6383660 - 6383609 - g 74 -16.4 -2.70932 | gap 1, overlap 6383635 GCTGGGCCGCAAGGA TGCGGCCGCGGCGGCCGCCCAGACC AGC GATCCGG-CGGCCGCGGAGGCGGCC ATCACCGCGATGCTG MSMEG_6319 6383481 - 6385259 + | penicillin-binding protein, transpeptidase MSMEG_6318 6386960 - 6385224 - | putative diol dehydratase reactivation protein TERM 2432 6385402 - 6385430 + g 77 -11.7 -3.86194 | gap 1 TCGTCGAGGGCACCG CCGCCGGCCAGC ACCAGC GC-GGTCGGCGG TTTCTCGAACGCCTT MSMEG_6320 6387301 - 6386957 - | diol dehydrase gamma subunit MSMEG_6321 6389571 - 6387298 - | glycerol dehydratase large subunit MSMEG_6322 6390985 - 6389612 - | bifunctional wax ester synthase/acyl-CoA diacylglycerol acyltransferase TERM 2433 6391037 - 6391020 - H 76 -9.9 -4.07568 | opp_overlap 6391020 CGGCGTGCCGGAAAA CGAGTAG CCGA CTACTCG TTTGTCCCGCACGAG TERM 2434 6391020 - 6391037 + H 73 -9.9 -3.85698 | opp_overlap 6391020 CGGCGTGCCGGAAAA CGAGTAG CCGA CTACTCG TTTGTCCCGCACGAG TERM 2435 6391226 - 6391184 - gH 71 -3.1 -4.56597 | gap 1, overlap 6391185 6391186 CTGGCTCCCGAAAAA CTGCTCGGACG-CCTCGGCG TCGA CACCGCCGTCGACCGCGCGG GCACCTACCCGTTCC MSMEG_6323 6391100 - 6391510 + | hypothetical protein MSMEG_6324 6391470 - 6393257 + | peroxidase MSMEG_6325 6393250 - 6393789 + | hypothetical protein TERM 2436 6393815 - 6393795 - T 100 -12.6 -5.1675 | opp_overlap 6393795 CGACCCATGAAAAAA CTCCCCAC GTCAG GTGGGGAG TTCTTATGGCGGTGG TERM 2437 6393795 - 6393815 + T 80 -12.6 -3.79906 | opp_overlap 6393795 CGACCCATGAAAAAA CTCCCCAC GTCAG GTGGGGAG TTCTTATGGCGGTGG MSMEG_6327 6394593 - 6394144 - | cytidine and deoxycytidylate deaminase family protein MSMEG_6328 6395096 - 6394590 - | hypothetical protein MSMEG_6330 6395196 - 6396140 + | prephenate dehydrogenase MSMEG_6329 6396618 - 6396103 - | hypothetical protein MSMEG_6331 6397508 - 6396702 - | ABC transporter, permease protein ProZ MSMEG_6332 6398149 - 6397505 - | amino acid ABC transporter, permease protein MSMEG_6333 6399255 - 6398149 - | amino acid ABC transporter, ATP-binding protein TERM 2438 6398630 - 6398587 - G 95 -17.4 -3.78934 | gap 1, opp_overlap 6398620, overlap 6398588 CGGGTTGGACAACAA CCGCGCCGGGGCGTCGTACTG CTG CAGCACGCCGCCGCGGC-CGA ACACCGCGACCTTGT TERM 2439 6398629 - 6398588 - G 82 -18.7 -2.87146 | gap 1, opp_overlap 6398620, overlap 6398587 GGGTTGGACAACAAC CGCGCCGGGGCGTCGTACTG CTG CAGCACGCCGCCGCGGC-CG AACACCGCGACCTTG MSMEG_6334 6399955 - 6399266 - | ABC transporter, quaternary amine uptake transporter (QAT) family protein, substrate-binding protein MSMEG_6335 6399944 - 6400210 + | hypothetical protein TERM 2440 6400473 - 6400483 + G 70 -3.2 -4.49311 | GCCCTGTGGACCGCG CTCA TCA TGGG TTTTCTGGTGCTGAT MSMEG_6336 6400335 - 6400700 + | hypothetical protein MSMEG_6337 6401740 - 6400727 - | phosphotransferase enzyme family protein MSMEG_6338 6402358 - 6401750 - | phosphoglycerate mutase family protein, putative TERM 2441 6403074 - 6403118 + G 72 -13.5 -3.24747 | overlap 6403076 TTCTCGCACCTGGCG CTGCGGCGCGCCGGTGATC CGCGCGA GATCGTCGGTGCGGCGCTG TTCCTGATGTCGGAC TERM 2442 6403076 - 6403116 + G 77 -14.7 -3.18849 | overlap 6403074 CTCGCACCTGGCGCT GCGGCGCGCCGGTGATC CGCGCGA GATCGTCGGTGCGGCGC TGTTCCTGATGTCGG MSMEG_6340 6402432 - 6403187 + | short-chain dehydrogenase/reductase SDR MSMEG_6339 6405064 - 6403184 - | metallo-beta-lactamase family protein TERM 2443 6404657 - 6404632 - G 73 -16.2 -2.62184 | TGTGGGTGTAGATCA CCGCGGTGAC GCGGCG GTCACCGCGG TGCGCGCGGTACAAC MSMEG_6341 6405956 - 6405078 - | 6-phosphogluconate dehydrogenase, NAD-binding MSMEG_6342 6406825 - 6405953 - | oxidoreductase TERM 2444 6407266 - 6407217 - g 79 -2.8 -4.82901 | gap 3, overlap 6407222 CTCTGGGCAGAAAAA CACATCGACCTGATCTGCGCGGCCG ACA CGGCCTAGC-GCTC-GATCG-CGTG CAGCACGACGTCGGT MSMEG_6344 6406923 - 6407252 + | transcriptional regulator MSMEG_6343 6407746 - 6407249 - | hypothetical protein TERM 2445 6407798 - 6407776 - H 87 -18.4 -2.65815 | overlap 6407760 6407755 TGGAGACCGACAGGA CCGCCCGGCG GCC CGCCGGACGG CACCTGGATAAACGC MSMEG_6345 6407908 - 6408258 + | hypothetical protein MSMEG_6346 6408351 - 6408779 + | hypothetical protein MSMEG_6347 6408748 - 6409584 + | hypothetical protein MSMEG_6348 6409714 - 6410292 + | hypothetical protein TERM 2446 6410362 - 6410320 - f 100 -22.2 -3.53811 | gap 1, opp_overlap 6410323 6410325, overlap 6410323 6410326 CGGACGCGGTGCAAA GACGAATCGGGGCGCGGTC TGTGAT GACCGCGCCCCGACTC-TC GTGTGCGCCCGAAGG TERM 2447 6410323 - 6410360 + F 100 -22.8 -2.62184 | opp_overlap 6410320 6410323 6410326, overlap 6410325 ACGCGGTGCAAAGAC GAATCGGGGCGCGGTC TGTGAT GACCGCGCCCCGACTC TCGTGTGCGCCCGAA TERM 2448 6410360 - 6410323 - f 100 -25 -2.60615 | opp_overlap 6410323 6410325, overlap 6410320 6410326 ACGCGGTGCAAAGAC GAATCGGGGCGCGGTC TGTGAT GACCGCGCCCCGACTC TCGTGTGCGCCCGAA TERM 2449 6410325 - 6410358 + F 93 -19.6 -2.85351 | opp_overlap 6410323 6410320 6410326, overlap 6410323 GCGGTGCAAAGACGA ATCGGGGCGCGGTC TGTGAT GACCGCGCCCCGAC TCTCGTGTGCGCCCG TERM 2450 6410357 - 6410326 - f 100 -23.1 -3.45571 | opp_overlap 6410325 6410323, overlap 6410323 6410320 CGGTGCAAAGACGAA TCGGGGCGCGGTC TGTGAT GACCGCGCCCCGA CTCTCGTGTGCGCCC hisC 6410654 - 6411739 + | putative aminotransferase MSMEG_6352 6411736 - 6412209 + | hypothetical protein MSMEG_6353 6412212 - 6413027 + | enoyl-CoA hydratase MSMEG_6354 6413230 - 6413949 + | serine esterase, cutinase family protein MSMEG_6355 6414246 - 6414500 + | hypothetical protein MSMEG_6356 6415206 - 6414574 - | AraC family transcriptional regulator MSMEG_6357 6415662 - 6415525 - | hypothetical protein MSMEG_6358 6415683 - 6416591 + | mesocentin MSMEG_6359 6416588 - 6417490 + | trypsin domain-containing protein MSMEG_6361 6418307 - 6417795 - | transcriptional regulator, MarR family protein TERM 2451 6418626 - 6418678 + G 70 -12 -3.31144 | overlap 6418627 GCAGCCCGTGTGCGC TCTGCTG-GCGGGCGGCGGCTACG CCGAATA CGTCGCCG-TGCCCGCTCCGCAGG TTCTCCCCGTCCCCG MSMEG_6362 6418375 - 6419352 + | quinone oxidoreductase MSMEG_6363 6420567 - 6419371 - | cysteine desulfurase family protein TERM 2452 6419487 - 6419521 + g 70 -12.1 -3.28712 | gap 1 CGATGACGTCGAGCA CGCGCGAGCTCGCGTT GGCG ATCGCGAGCACGC-CG TTGTCGGCCAGGCGC MSMEG_6365 6421207 - 6421734 + | hypothetical protein TERM 2453 6422187 - 6422163 - g 81 -18.7 -2.80307 | overlap 6422152 CAAAGGTCGACGAGA TCGCCGAGTTC ACC GAACTCGGCGA GTACCTGTCGATGCC MSMEG_6366 6421742 - 6422551 + | O-antigen export system, ATP-binding protein TERM 2454 6422685 - 6422637 - g 74 -12.4 -3.62096 | gap 1 TCGCAGGACCGCAAA CCCG-ACCACCTGATCGTCGTCG ACAA CGACAACGACCCGCAGGTGCGGG AACTGGTGACCGGCC MSMEG_6367 6422538 - 6423446 + | glycosyl transferase, group 2 family protein MSMEG_6369 6423443 - 6424273 + | O-antigen export system, permease protein MSMEG_6368 6424665 - 6424261 - | DNA-binding protein TERM 2455 6424716 - 6424732 + r 81 -2.9 -5.09225 | GCGAGTGTGAAACCT CTGCG ACTCCAA CGCGG TTTTTTCGCTGAGGT pcaC 6425236 - 6424775 - | 4-carboxymuconolactone decarboxylase MSMEG_6371 6425285 - 6426694 + | GntR-family protein regulator MSMEG_6372 6426713 - 6427120 + | membrane protein MSMEG_6373 6428068 - 6427130 - | hypothetical protein panE 6429102 - 6428080 - | 2-dehydropantoate 2-reductase MSMEG_6375 6430376 - 6429099 - | transporter, major facilitator family protein MSMEG_6376 6431502 - 6430444 - | transcriptional regulator LacI family protein MSMEG_6377 6431645 - 6431538 - | hypothetical protein TERM 2456 6431642 - 6431632 - G 78 -6.8 -4.56597 | overlap 6431633 CTTTCGTGCGAAAAA GTGG GTG CCAC CACGCACGCCACCTG MSMEG_6378 6431722 - 6432624 + | senescence marker protein-30 MSMEG_6379 6432650 - 6433981 + | transporter, major facilitator family protein MSMEG_6380 6434412 - 6434002 - | hypothetical protein TERM 2457 6434640 - 6434650 + r 70 -2.4 -4.62441 | AGCCAGCGAAACGCC GCGG AGG CCAC TTTCTTTCTGTACAC MSMEG_6381 6436762 - 6434939 - | hypothetical protein MSMEG_6382 6436944 - 6438350 + | oxidoreductase, FAD-binding TERM 2458 6438591 - 6438641 + G 74 -14.7 -3.05596 | gap 2 GGCGGTCTACGACTC GCTGCACGCGCTGGCCGCGGCGCGC CTG GTGCGCCGCATCCAGC-CGT-CAGG TTCGGTGGCGCGCTA MSMEG_6383 6438415 - 6438876 + | transcription regulator FurA TERM 2459 6439174 - 6439140 - g 82 -16.4 -3.28712 | GTCCGCGGTTCAGAA CCTCGATGTCGACGCG CTG CGCGCCGACATCGTCG AGGTCATGCACACGT katG 6438913 - 6441132 + | catalase/peroxidase HPI TERM 2460 6441188 - 6441140 - f 93 -17.4 -3.58726 | gap 1, opp_overlap 6441149, overlap 6441143 TCGCCTGACACACAA CCACCTGGACGCCCAGGCCGGCC TCAC AGCCGGCCTGGGCGTTC-GGTCT CGAGCGCAAGGACCG TERM 2461 6441185 - 6441143 - f 100 -23.5 -2.91997 | gap 1, opp_overlap 6441149, overlap 6441140 CCTGACACACAACCA CCTGGACGCCCAGGCCGGCC TCAC AGCCGGCCTGGGCGTTC-GG TCTCGAGCGCAAGGA TERM 2462 6441149 - 6441180 + F 100 -24.5 -3.12351 | opp_overlap 6441143 6441140 ACACAACCACCTGGA CGCCCAGGCCGGC CTCACA GCCGGCCTGGGCG TTCGGTCTCGAGCGC MSMEG_6385 6441262 - 6442026 + | short chain dehydrogenase TERM 2463 6442237 - 6442262 + G 70 -12.5 -3.26947 | overlap 6442224 GGCGCGGCCGCAGGA CGCTGGCGCGC CTGG GTGCGCTGGCG TTCATCTCGGCGTTC MSMEG_6386 6442032 - 6443906 + | membrane protein TERM 2464 6444996 - 6445047 + G 79 -15.7 -3.35996 | opp_overlap 6445007 GCGCCTGGGCGCCGC CGCCAAGCACAGCCGCGCCGCGG CATGGA CCGCCGCGGGCCTGTTCCTGGCG TTCTGGCTGCCGCTC MSMEG_6387 6443929 - 6447153 + | arabinosyltransferase A MSMEG_6388 6447287 - 6450529 + | arabinosyltransferase B MSMEG_6389 6450526 - 6453774 + | arabinosyltransferase A MSMEG_6390 6453932 - 6455158 + | transporter, major facilitator family protein TERM 2465 6455139 - 6455177 + T 76 -13.8 -3.15249 | opp_overlap 6455141, overlap 6455141 AGGCCGGTACACGAA AAGACCCGATCCCCCTGT AGT GCAGGAGGATCGGGCCTC TTCGTGGGACGTCTA TERM 2466 6455175 - 6455141 - T 100 -20.1 -4.34402 | opp_overlap 6455139 6455141 GCCGGTACACGAAAA GACCCGATCCCCCTG TAGTG CAGGAGGATCGGGCC TCTTCGTGGGACGTC TERM 2467 6455141 - 6455175 + T 85 -16.4 -3.1372 | opp_overlap 6455141, overlap 6455139 GCCGGTACACGAAAA GACCCGATCCCCCTGT AGT GCAGGAGGATCGGGCC TCTTCGTGGGACGTC MSMEG_6391 6456743 - 6455190 - | propionyl-CoA carboxylase beta chain MSMEG_6392 6462190 - 6456740 - | polyketide synthase MSMEG_6393 6464217 - 6462325 - | acyl-CoA synthetase MSMEG_6394 6465475 - 6464462 - | hypothetical protein MSMEG_6395 6465967 - 6465494 - | hypothetical protein MSMEG_6396 6466936 - 6466034 - | antigen 85-C MSMEG_6397 6467110 - 6466940 - | hypothetical protein TERM 2468 6467079 - 6467044 - G 83 -14.9 -3.5394 | gap 2 AAACCGTCCCGGAAA TGATCGAGCGGCGATCC GAGA GGATCGCCGC-CG-TCA GCTCAACTCGATCAG MSMEG_6398 6468098 - 6467091 - | antigen 85-A MSMEG_6399 6469248 - 6468235 - | antigen 85-C MSMEG_6400 6471329 - 6469392 - | transmembrane protein MSMEG_6401 6472365 - 6471409 - | phosphoribose diphosphate:decaprenyl-phosphate phosphoribosyltransferase MSMEG_6402 6472944 - 6472402 - | PAP2 superfamily protein MSMEG_6403 6474881 - 6472941 - | bifunctional udp-galactofuranosyl transferase glft glf 6476116 - 6474878 - | UDP-galactopyranose mutase MSMEG_6405 6476344 - 6477261 + | Erp protein TERM 2469 6477337 - 6477279 - f 84 -13.9 -3.68073 | opp_overlap 6477286, overlap 6477280 6477292 CAGGCGAGTCAACAA GCGTCACCCGAAACGGCACCGCAGAA-GC CTC GCGCTCTGCGGTGTCGTTGCGGTTG-CGT CCAGATTCGCGGGCG TERM 2470 6477336 - 6477280 - f 87 -17.4 -2.80522 | opp_overlap 6477286, overlap 6477279 6477292 AGGCGAGTCAACAAG CGTCACCCGAAACGGCACCGCAGAA-GC CTC GCGCTCTGCGGTGTCGTTGCGGTTG-CG TCCAGATTCGCGGGC TERM 2471 6477286 - 6477331 + F 100 -20.6 -3.06831 | gap 1, opp_overlap 6477280 6477279 6477292 GTCAACAAGCGTCAC CCGAAACGGCACCGCAGAAGC CTCGC GCT-CTGCGGTGTCGTTGCGG TTGCGTCCAGATTCG TERM 2472 6477325 - 6477292 - f 84 -13.9 -3.60475 | gap 1, opp_overlap 6477286, overlap 6477280 6477279 AAGCGTCACCCGAAA CGGCACCGCAGAA-GC CTC GCGCTCTGCGGTGTCG TTGCGGTTGCGTCCA MSMEG_6406 6477408 - 6479018 + | N-acetylmuramoyl-L-alanine amidase MSMEG_6407 6479900 - 6479076 - | Cof-like hydrolase TERM 2473 6479821 - 6479775 - G 80 -16.6 -3.21099 | gap 2, opp_overlap 6479794 6479807 6479811 CGTCGCGAGCACGAA CGTCGCACCCGCGGCGACGGCC GCCCG GACCG-CGGCGCGGGTACG-CG GCGTGACCCGCTCGT TERM 2474 6479861 - 6479884 + g 76 -8.1 -4.37886 | gap 1 GCAGCGTGCCGTCGA CGTCGGTGGC GATGA GCC-CCGGCG TTTTGTCAGAGGTCA MSMEG_6408 6480658 - 6479897 - | acyltransferase family protein MSMEG_6409 6481456 - 6480665 - | acyltransferase family protein MSMEG_6410 6481598 - 6483154 + | Rieske 2Fe-2S family protein MSMEG_6411 6483151 - 6483483 + | hypothetical protein MSMEG_6412 6484305 - 6483487 - | hypothetical protein serS 6485555 - 6484302 - | seryl-tRNA synthetase TERM 2475 6485793 - 6485820 + G 70 -14.8 -2.74192 | overlap 6485791 CGGTTCTGGATCAGC CTGCACGCCGCG TCGA CGCGGCGTGCGC TGCTGTTGACCGCTC MSMEG_6414 6485712 - 6487163 + | hypothetical protein MSMEG_6415 6487173 - 6487517 + | hypothetical protein TERM 2476 6487542 - 6487554 + F 70 -4.7 -4.36914 | opp_overlap 6487536 ACACGAAAACGCCCG CGCGG CAA CCACG TTTTGTCGGCCCGCA MSMEG_6417 6487586 - 6487774 + | hypothetical protein MSMEG_6416 6488457 - 6487771 - | phosphoglycerate mutase family protein MSMEG_6418 6489386 - 6488454 - | prephenate dehydratase MSMEG_6419 6489515 - 6490300 + | hypothetical protein MSMEG_6420 6490338 - 6491120 + | abortive infection protein MSMEG_6421 6490613 - 6492484 + | transcriptional regulator MSMEG_6422 6492624 - 6493169 + | ferritin family protein MSMEG_6423 6494028 - 6493183 - | glycerophosphoryl diester phosphodiesterase family protein MSMEG_6424 6495190 - 6494033 - | transmembrane protein MSMEG_6425 6495560 - 6495219 - | rhodanese-like domain-containing protein TERM 2477 6495681 - 6495731 + H 76 -14 -3.1505 | gap 1, opp_overlap 6495692, overlap 6495683 GTTTCCACAGGTTCA TC-CACAGGCAACGCCGGACGGG ACGGGC CCTGACCGGCGTCACCTGTGTGA TTCCTGGACGATGCT TERM 2478 6495683 - 6495728 + H 81 -16.8 -2.78018 | opp_overlap 6495692, overlap 6495681 TTCCACAGGTTCATC CACAGGCAACGCCGGACGGG ACGGGC CCTGACCGGCGTCACCTGTG TGATTCCTGGACGAT MSMEG_6426 6496047 - 6496190 + | hypothetical protein MSMEG_6427 6496331 - 6496954 + | [Mn] superoxide dismutase MSMEG_6428 6497167 - 6497700 + | hypothetical protein MSMEG_6429 6497888 - 6497733 - | hypothetical protein TERM 2479 6498269 - 6498253 - RH 72 -7.2 -4.22652 | opp_overlap 6498263, overlap 6498246 TCACACGACGCAAAA CCACGC TCGGC GCGCGG CGAAGACACGTGTTT MSMEG_6430 6500012 - 6498318 - | hypothetical protein MSMEG_6431 6498402 - 6498830 + | hypothetical protein TERM 2480 6499467 - 6499443 - GT 71 -9.9 -3.75024 | CCGCAGCAGGAAGAA GGCGCTGGCCG CGA CGATCAGCACC ATGCCCACGGTGAAG MSMEG_6432 6500470 - 6500009 - | hypothetical protein MSMEG_6433 6501679 - 6500573 - | hypothetical protein TERM 2481 6500771 - 6500753 - G 78 -17.4 -2.71011 | ACCGGCCCGGAAGGA CGCGGGCG GCG CGCCCGCG TCGAGTGCCCCGACC TERM 2482 6500983 - 6501005 + g 79 -14.8 -3.28712 | CCGCGCCTGGCGGTT CTGCGGCGGC CCC GCCGCCGGAG TTCTGGACCACCCGG MSMEG_6434 6501891 - 6502547 + | hypothetical protein TERM 2483 6502887 - 6502917 + G 76 -13.9 -3.42996 | overlap 6502908 CGCGGCGGTGTGGCT CGGCGCGCTGCTC ATCGC GGGCGGCGCGCGG TTGTGCTCCGTGGTC MSMEG_6435 6502555 - 6503088 + | hypothetical protein MSMEG_6436 6503125 - 6503676 + | copper resistance protein CopC TERM 2484 6504052 - 6504098 + G 74 -12.1 -3.6336 | gap 1 TCAGCATCGTCGCCG CCGTGGCGGTCTGCGGTGTCGC GTCG GCGACGCAGC-GTCCGGCCCGG TTCTCTGTGGTGTCC MSMEG_6437 6503688 - 6504617 + | copper resistance protein D TERM 2485 6504964 - 6504911 - g 71 -10.8 -3.62775 | gap 1, overlap 6504926 AGCACCCGCCAAGAA GGCACCGGCGAAAAAGGCACCGGCC AAGAA GGCCGA-GCCCGCCGCGCCCGCGCC GGTCGAGAAGCCCAC TERM 2486 6504949 - 6504926 - g 81 -8.1 -4.58395 | gap 1, overlap 6504911 GGCACCGGCGAAAAA GGCACCGGCC AAGAA GGCCGA-GCC CGCCGCGCCCGCGCC MSMEG_6438 6504708 - 6505196 + | hypothetical protein MSMEG_6439 6505226 - 6505705 + | ribonuclease activity regulator protein RraA TERM 2487 6505725 - 6505754 + T 93 -17.9 -3.74792 | opp_overlap 6505725 CCTGCACACGCAGAA CTGCCCCCTTCCC GTGC GGGAAAGGGGCAG TTTCCGTATCTGCTC TERM 2488 6505754 - 6505725 - T 100 -20.1 -3.39327 | opp_overlap 6505725 CCTGCACACGCAGAA CTGCCCCCTTCCC GTGC GGGAAAGGGGCAG TTTCCGTATCTGCTC MSMEG_6440 6507247 - 6505769 - | monooxygenase, flavin-binding family protein TERM 2489 6507258 - 6507296 + H 71 -13.4 -3.02263 | opp_overlap 6507264, overlap 6507260 6507264 6507266 GTCATGGACCGACGG TATCAACGCAGTGTTGAT GCG GTCAACAGTGTGTTGATA TCTTCGACGCGGTGT MSMEG_6441 6507325 - 6507978 + | transcriptional regulator, TetR family protein TERM 2490 6508518 - 6508533 + G 72 -3.2 -4.67011 | gap 1, overlap 6508521 GCTCCTGGTGCCACC CGACCGG GAA CTGG-CG TTTTTGCATCCGCTT dinP 6508015 - 6509226 + | DNA polymerase IV MSMEG_6442 6509585 - 6509223 - | integral membrane protein MSMEG_6444 6509624 - 6509908 + | YiaAB two helix domain-containing protein MSMEG_6445 6510913 - 6509909 - | hypothetical protein TERM 2491 6510845 - 6510869 + g 72 -15 -2.86271 | gap 1, overlap 6510844 6510841 GCGATACGCCATCAC CCG-GCGCGGG TCTT CCCGCGCGCGG TCCTTGTAGTAGGCG MSMEG_6446 6511011 - 6512072 + | hypothetical protein MSMEG_6447 6512085 - 6512408 + | hypothetical protein MSMEG_6448 6512938 - 6512567 - | hypothetical protein MSMEG_6449 6512612 - 6512932 + | hypothetical protein MSMEG_6450 6512987 - 6514384 + | hypothetical protein TERM 2492 6514432 - 6514391 - f 72 -12.9 -3.14602 | gap 1, overlap 6514389 CCCAGCTGATCAACA GTCCCCGGC-CCGCGCCGCA CAG TGCGGTGTGGCACCCGGGAC GCGGTAGACCCACAG MSMEG_6451 6514667 - 6515059 + | transcriptional regulator, ArsR family protein MSMEG_6453 6515062 - 6516696 + | sulfate permease MSMEG_6452 6518045 - 6516693 - | [NADP+] succinate-semialdehyde dehydrogenase TERM 2493 6518141 - 6518151 + H 80 -4.6 -4.72272 | opp_overlap 6518135, overlap 6518133 GCGTAATCAGCAGCT CTCG CCG CGGG TTTTTCGTCCAGGGA MSMEG_6454 6518199 - 6519053 + | hypothetical protein MSMEG_6455 6519647 - 6519063 - | hypothetical protein MSMEG_6456 6519897 - 6519757 - | hypothetical protein MSMEG_6457 6520166 - 6520669 + | oxidoreductase molybdopterin binding subunit gltD 6522139 - 6520673 - | glutamate synthase subunit beta MSMEG_6459 6526760 - 6522132 - | ferredoxin-dependent glutamate synthase 1 TERM 2494 6526544 - 6526512 - GH 72 -13.3 -3.14344 | opp_overlap 6526504 CACCGCGCGCAGGAA GGCGTCGGGAACCTG GAT CAGGATCCCCGCGCC GTCGCCCGTGTTGGG MSMEG_6460 6526677 - 6526865 + | hypothetical protein MSMEG_6461 6527449 - 6526946 - | hypothetical protein MSMEG_6462 6527168 - 6528490 + | IS1096, tnpA protein MSMEG_6463 6529199 - 6528498 - | IS1096, tnpR protein MSMEG_6464 6529689 - 6530489 + | hypothetical protein TERM 2495 6531652 - 6531688 + G 78 -9.4 -4.32034 | gap 2, overlap 6531653 TGGCGCTTGGGCGAT GCGCTGGCGCTGCCTGGG ATA CCC-GACAGC-CCAGCGA TTTTCGTCGTCGTCG MSMEG_6465 6530521 - 6531897 + | chloride channel MSMEG_6466 6532006 - 6532779 + | aquaporin Z TERM 2496 6532835 - 6532784 - T 100 -20.2 -4.57073 | opp_overlap 6532787, overlap 6532787 GACGCGGCTGAAAAA GAACCGCACCGTCGGGGCCGCC GTTGTCTT GACGTCCCCGACGATGCGGTTG TGCGGTGAGGTTCTC TERM 2497 6532832 - 6532787 - T 100 -21.9 -4.40561 | opp_overlap 6532787, overlap 6532784 GCGGCTGAAAAAGAA CCGCACCGTCGGGGCCGCC GTTGTCTT GACGTCCCCGACGATGCGG TTGTGCGGTGAGGTT TERM 2498 6532787 - 6532832 + T 93 -18.2 -3.3334 | opp_overlap 6532787 6532784 GCGGCTGAAAAAGAA CCGCACCGTCGGGGCCGCCG TTGTCT TGACGTCCCCGACGATGCGG TTGTGCGGTGAGGTT MSMEG_6467 6533404 - 6532853 - | starvation-induced DNA protecting protein MSMEG_6468 6534350 - 6533466 - | hypothetical protein TERM 2499 6533567 - 6533544 - G 78 -13.2 -3.61398 | gap 1 GCTGGCCTCCAACAA CCGCA-CGGCA CGG TGCCGGTGCGG CCGCATCGGTTCGAG MSMEG_6469 6534834 - 6534409 - | hypothetical protein MSMEG_6470 6535030 - 6535236 + | hypothetical protein TERM 2500 6535284 - 6535248 - T 100 -22.3 -2.87931 | opp_overlap 6535253, overlap 6535214 GTGACGCGTGACAGA CGCGAGAGGGGCACCCG GAC CGGGTGCCCCTCTTTCG TGTCAGTGCGGCTTT TERM 2501 6535253 - 6535279 + T 100 -23.8 -3.84825 | opp_overlap 6535248 GCGTGACAGACGCGA GAGGGGCACCCG GAC CGGGTGCCCCTC TTTCGTGTCAGTGCG MSMEG_6471 6536726 - 6535287 - | glycine/D-amino acid oxidase TERM 2502 6535838 - 6535809 - G 74 -13.6 -3.28712 | opp_overlap 6535813, overlap 6535812 GCGCTGCGCGTAGAA GAAGCCGTGGGC CGAATC GCCCACGGTTTC GCGTCCCTGCCAACC TERM 2503 6535835 - 6535812 - G 71 -9.5 -3.78934 | opp_overlap 6535813, overlap 6535809 CTGCGCGTAGAAGAA GCCGTGGGC CGAATC GCCCACGGT TTCGCGTCCCTGCCA TERM 2504 6535813 - 6535834 + g 74 -13 -3.61178 | opp_overlap 6535812 6535809 TGCGCGTAGAAGAAG CCGTGGGC CGAATC GCCCACGG TTTCGCGTCCCTGCC MSMEG_6472 6536834 - 6537058 + | hypothetical protein TERM 2505 6537060 - 6537117 + T 100 -30.1 -2.67747 | gap 1, opp_overlap 6537074, overlap 6537060 6537074 ACAGCGGCCGGTGAG CGGCTGCACGC-AAAGAGGGGCACCCGG GGA TCGGGTGCCCCTCTTTCGTGTTCGGCCG CTTCTGGTCTCGCGA TERM 2506 6537060 - 6537118 + T 100 -24.1 -3.46602 | gap 2, opp_overlap 6537074, overlap 6537060 6537074 ACAGCGGCCGGTGAG -CGGCTGCACGC-AAAGAGGGGCACCCGG GGA TCGGGTGCCCCTCTTTCGTGTTCGGCCGC TTCTGGTCTCGCGAG TERM 2507 6537102 - 6537074 - T 100 -21.8 -3.64703 | opp_overlap 6537060 6537060 6537074 GCGGCTGCACGCAAA GAGGGGCACCCG GGGAT CGGGTGCCCCTC TTTCGTGTTCGGCCG TERM 2508 6537074 - 6537102 + T 100 -22.5 -3.92324 | opp_overlap 6537074, overlap 6537060 6537060 GCGGCTGCACGCAAA GAGGGGCACCCGG GGA TCGGGTGCCCCTC TTTCGTGTTCGGCCG MSMEG_6473 6537961 - 6537143 - | tetracenomycin polyketide synthesis O-methyltransferase TcmP MSMEG_6474 6539046 - 6538024 - | nucleoside-diphosphate-sugar epimerase MSMEG_6475 6539543 - 6539043 - | hypothetical protein MSMEG_6476 6539978 - 6539586 - | hypothetical protein msrA 6540054 - 6540569 + | methionine sulfoxide reductase A MSMEG_6478 6541916 - 6540573 - | putative cytochrome P450 135B1 MSMEG_6480 6542006 - 6542638 + | putative transcriptional regulatory protein MSMEG_6479 6543184 - 6542615 - | putative transcriptional regulator MSMEG_6482 6543238 - 6543909 + | secreted protein MSMEG_6481 6544952 - 6543906 - | hypothetical protein MSMEG_6483 6545705 - 6544983 - | methyltransferase type 11 MSMEG_6484 6546940 - 6545699 - | glycosyl transferase MSMEG_6485 6547516 - 6547061 - | ATP binding protein MSMEG_6486 6548576 - 6547545 - | oxidoreductase, FAD/FMN-binding MSMEG_6487 6549669 - 6548602 - | 2-hydroxy-3-carboxy-6-oxo-7-methylocta-2, 4-dienoate decarboxylase MSMEG_6488 6550114 - 6549677 - | hypothetical protein MSMEG_6489 6551340 - 6550150 - | hypothetical protein MSMEG_6490 6552680 - 6551337 - | major facilitator superfamily protein MSMEG_6491 6554252 - 6552753 - | aldehyde dehydrogenase TERM 2509 6553862 - 6553905 + g 74 -14.4 -3.28791 | gap 1 TGACGTAGGGACCGT CGCCGGGCAGCACGGCGGTGC GCT GCGCGGCCA-GCAGTCCGGCG TTGTAGCGGAACCAT TERM 2510 6553928 - 6553948 + g 71 -9.6 -3.68351 | opp_overlap 6553920 GGAACCATTCCGGTA CCCGGGAC AGCTG GGCCCGGG TTTCGGTGATGGGCC TERM 2511 6555161 - 6555177 + G 83 -12.3 -4.07568 | GAGGTGCTCGCCTGC TCCGTCG TCA CGACGGA TTTTCCGGACACCAC MSMEG_6492 6554465 - 6556201 + | GAF domain-containing protein MSMEG_6493 6556372 - 6557424 + | hypothetical protein MSMEG_6494 6557421 - 6558251 + | ABC nitrate/sulfonate/bicarbonate family protein transporter, inner membrane subunit, putative MSMEG_6495 6558248 - 6559027 + | ABC nitrate/sulfonate/bicarbonate family protein transporter, inner membrane subunit, putative MSMEG_6496 6559046 - 6559807 + | nitrate/sulfonate/bicarbonate ABC transporter ATPase subunit MSMEG_6497 6560428 - 6559895 - | hypothetical protein MSMEG_6498 6560543 - 6560836 + | hypothetical protein TERM 2512 6560856 - 6560901 + F 95 -16.2 -4.1196 | overlap 6560857 6560859 CGAAGTAGACCCAGA CCGTCAGCCCCCGTCGGA TTCGTCCCCC TCCGGCGGGGGCTGATGC TTTTCCGGGTGCCTT TERM 2513 6560857 - 6560900 + F 93 -19.7 -3.06694 | overlap 6560856 6560859 GAAGTAGACCCAGAC CGTCAGCCCCCGTCGGA TTCGTCCCCC TCCGGCGGGGGCTGATG CTTTTCCGGGTGCCT TERM 2514 6560859 - 6560898 + F 89 -18.7 -3.09004 | overlap 6560857 6560856 AGTAGACCCAGACCG TCAGCCCCCGTCGGA TTCGTCCCCC TCCGGCGGGGGCTGA TGCTTTTCCGGGTGC MSMEG_6499 6560975 - 6561772 + | hypothetical protein MSMEG_6500 6561852 - 6563714 + | hypothetical protein MSMEG_6501 6563711 - 6563923 + | hypothetical protein MSMEG_6502 6563920 - 6564363 + | hypothetical protein TERM 2515 6564581 - 6564627 + G 75 -15.9 -2.90075 | gap 2 CCCCGTCACCCGGTG GGGCGCCGGCCTGCTCGCGCTGG CGT TCA-C-CGGGTGGGTCGGCGCCC TGTCGTTCACGGGAC MSMEG_6504 6564360 - 6565652 + | hypothetical protein MSMEG_6503 6566215 - 6565649 - | transcriptional regulator, TetR family protein MSMEG_6505 6566306 - 6567010 + | NfnB protein MSMEG_6506 6567028 - 6567579 + | nicotinamidase/pyrazinamidase glgX 6567776 - 6569893 + | glycogen debranching enzyme GlgX TERM 2516 6570154 - 6570136 - f 75 -11.8 -3.53091 | opp_overlap 6570136 6570132 6570138 ACCTCTCTCGTCAAA TACCTCTG TGA CAGAGGTA TCGTGTTTCGTGTGA MSMEG_6508 6570166 - 6570633 + | MarR-family protein transcriptional regulator MSMEG_6509 6570630 - 6571499 + | ABC-type drug export system, ATP-binding protein MSMEG_6510 6571489 - 6572292 + | ABC-type drug export system, membrane protein MSMEG_6511 6572351 - 6573508 + | acyl-CoA dehydrogenase domain-containing protein MSMEG_6512 6573517 - 6574626 + | acyl-CoA dehydrogenase domain-containing protein MSMEG_6513 6576638 - 6574647 - | membrane transport protein MSMEG_6514 6578015 - 6576690 - | trehalose synthase-fused maltokinase treS 6579793 - 6578012 - | trehalose synthase TERM 2517 6579581 - 6579595 + gH 72 -2.8 -4.65895 | GTCGACCCCGAGCCA CTTGAT GTA GTCGAG TTTTTCGGTGAGGCC MSMEG_6517 6579767 - 6579907 + | hypothetical protein MSMEG_6516 6580066 - 6579893 - | hypothetical protein MSMEG_6518 6580067 - 6580456 + | hypothetical protein MSMEG_6519 6580577 - 6581377 + | pyridoxamine 5'-phosphate oxidase family protein MSMEG_6520 6581422 - 6582000 + | orotate phosphoribosyltransferase MSMEG_6521 6583069 - 6582005 - | sulfate/thiosulfate import ATP-binding protein CysA 2 MSMEG_6522 6583887 - 6583066 - | ABC transporter, inner membrane subunit TERM 2518 6583856 - 6583799 - G 79 -7.1 -4.51224 | gap 5, opp_overlap 6583806, overlap 6583804 6583806 6583809 AACAGGAAGAACAAA CCGAAGAGC-ACC---CACAGCGTCGCGCG CAC CGCGCGACGCAGGGCACGGTTGCTC-CCGG TGCTCGTCCCCGTGG TERM 2519 6583844 - 6583806 - G 74 -13.9 -3.25836 | gap 2, opp_overlap 6583806, overlap 6583799 6583804 6583809 AGAACAAACCGAAGA GCACCCACAGCGTCGCGCG CAC CGCGCGACGC-A-GGGCAC GGTTGCTCCCGGTGC TERM 2520 6583842 - 6583809 - G 70 -14.5 -2.7965 | gap 1, opp_overlap 6583806, overlap 6583806 6583799 6583804 ACAAACCGAAGAGCA CCCACAGCGTCGCGCG CAC CGCGCGACGCAG-GGC ACGGTTGCTCCCGGT MSMEG_6523 6584744 - 6583884 - | ABC transporter, membrane spanning protein MSMEG_6524 6585904 - 6584753 - | polyamine/opine/phosphonate ABC transporter periplasmic ligand-binding protein TERM 2521 6586602 - 6586560 - g 72 -6.9 -4.25056 | gap 1, overlap 6586561 GAGTCCACCAAGAAA CCCGAGATCGGTGTGACCCG TACG CCGGTCAC-CCGCTCCCCGA TCAGCGTCGCTCCAC MSMEG_6525 6586134 - 6586640 + | hypothetical protein TERM 2522 6586701 - 6586742 + G 75 -16.6 -2.91452 | gap 1, overlap 6586696 TTTCGCGGATGCGCC TGCGGCGGTCCTGTCGACG CTCAA CGCCGACGGGGC-GCCGCA TCTGGTTCCCGTGGT MSMEG_6526 6586660 - 6587088 + | pyridoxamine 5'-phosphate oxidase family protein MSMEG_6527 6587698 - 6587093 - | transcriptional regulator, TetR family protein TERM 2523 6587563 - 6587543 - G 73 -7.5 -4.15396 | overlap 6587546 6587547 GGGGAAATGAAAGAA GAAGGTGCC GTG GGCAACTCC CGCGGCCGCCACGAT MSMEG_6528 6587895 - 6588647 + | hypothetical protein TERM 2524 6589382 - 6589349 - g 85 -16.7 -3.57263 | gap 1, overlap 6589351 ATCGTGATTCTCAAA CAGGC-CGCCGAGCGC CAG GCGCTCGACGAGCCGG CACTGGACTGACTGC TERM 2525 6589380 - 6589351 - g 87 -17.9 -3.36515 | gap 1, overlap 6589349 CGTGATTCTCAAACA GGC-CGCCGAGCGC CAG GCGCTCGACGAGCC GGCACTGGACTGACT MSMEG_6529 6588644 - 6589393 + | hypothetical protein TERM 2526 6589455 - 6589432 - g 78 -12.4 -3.794 | gap 1, overlap 6589435 CGCGAACCGAGGAAA GCACCACGGCC ACC GGCCGCGG-GC ATCTGCCCGGCGACG MSMEG_6530 6589413 - 6589988 + | cytochrome c oxidase subunit III family protein MSMEG_6531 6589990 - 6590283 + | hypothetical protein MSMEG_6532 6590293 - 6590910 + | transcriptional regulatory protein MSMEG_6533 6591837 - 6590911 - | hypothetical protein MSMEG_6534 6592053 - 6591922 - | hypothetical protein TERM 2527 6593074 - 6593105 + Gr 86 -6.5 -4.91712 | opp_overlap 6593075, overlap 6593075 TTCTCCGGCACCATA AGGCCCGACGC CACTGTGCAC GTGTCGGGCCA TTTTTCTGCGTTCAC TERM 2528 6593491 - 6593475 - gR 76 -2.1 -4.67982 | overlap 6593476 GCGCATCGAACAAAA CCCGGAG ACC CACCAGA TCGTGCTGTGGTGCA MSMEG_6535 6592036 - 6594231 + | elongation factor G MSMEG_6536 6594799 - 6594233 - | carboxymuconolactone decarboxylase MSMEG_6537 6594900 - 6595475 + | transcriptional regulator, TetR family protein MSMEG_6538 6595503 - 6596210 + | 3-oxoacyl-(acyl-carrier-protein) reductase, putative TERM 2529 6596466 - 6596455 - g 76 -7.2 -4.37092 | opp_overlap 6596457, overlap 6596456 6596457 ACCCGCCGTACAAAA CCGC ATGC GCGG GCATGGTGATTCTCG MSMEG_6540 6596379 - 6597620 + | virulence factor Mce family protein MSMEG_6539 6598509 - 6597610 - | hypothetical protein MSMEG_6541 6598893 - 6598543 - | anti-sigma factor antagonist MSMEG_6542 6599987 - 6598890 - | B12-binding domain-containing protein TERM 2530 6600387 - 6600445 + r 75 -13.7 -2.98823 | gap 1, opp_overlap 6600359 CCCGCGCTGGTGAGC CGCAGCGCCAC-GTCGTCGTCCCGGCGG GCGG CCGACGCGAGCACGACAGTGGCGAAGCG TGTGTGTGCCGCCGA TERM 2531 6601670 - 6601648 - R 90 -17 -3.31144 | TCCTCACGTCCAGAA CTCGCGCCCG CCT CGGGCACGAG GACTAGACGACCTGC MSMEG_6544 6601822 - 6601673 - | transport-associated, putative MSMEG_6545 6602834 - 6602127 - | phosphoglycerate mutase family protein TERM 2532 6602798 - 6602812 + g 70 -8.5 -3.87104 | opp_overlap 6602797 6602796 GGGCCACCACCAATG CCGCG ACGGC CGCGG TTCTTCTGGTGTGCG MSMEG_6546 6603639 - 6602836 - | transcriptional regulatory protein MSMEG_6547 6603696 - 6604958 + | amidohydrolase 2 TERM 2533 6604991 - 6604953 - T 81 -13.9 -3.54919 | gap 1, overlap 6604943 AAGCAGCTCGCCAAA GCGTGATCGCGCCGGC GTGATCGG GCCGGCGTGATC-CGC TCACTGCAGGACGAT MSMEG_6548 6605408 - 6604992 - | Rieske iron-sulfur protein MSMEG_6549 6606014 - 6605424 - | hypothetical protein MSMEG_6550 6606169 - 6605939 - | hypothetical protein MSMEG_6551 6606516 - 6606004 - | hypothetical protein MSMEG_6552 6607028 - 6606582 - | hypothetical protein MSMEG_6553 6608885 - 6607155 - | ABC transporter ATP-binding protein MSMEG_6554 6611464 - 6608882 - | ABC transporter ATP-binding protein TERM 2534 6610444 - 6610428 - G 71 -10.1 -3.72576 | GCGGCGGCCAGGAAA CTGCCGG TTC CCAGCAG CGAGATCGCGACCAC MSMEG_6555 6612174 - 6611464 - | transcriptional regulator, TetR family protein, putative MSMEG_6556 6612275 - 6612889 + | putative transcriptional regulator MSMEG_6558 6612886 - 6613542 + | putative enoyl-CoA hydratase MSMEG_6557 6614441 - 6613539 - | dehydrogenase MSMEG_6559 6614735 - 6614451 - | hypothetical protein MSMEG_6560 6615246 - 6614824 - | acyl dehydratase MSMEG_6561 6616469 - 6615249 - | nonspecific lipid-transfer protein MSMEG_6562 6618736 - 6616478 - | putative acyl-CoA dehydrogenase MSMEG_6563 6619743 - 6618733 - | dihydrokaempferol 4-reductase TERM 2535 6619792 - 6619776 - H 81 -12.3 -3.85698 | opp_overlap 6619774 6619776 TCCTCGGGTCATAAA CGAGACG GTA CGTCTCG TCTTGTGGCAGAGTA TERM 2536 6619776 - 6619792 + H 71 -12.3 -3.21593 | opp_overlap 6619776, overlap 6619774 TCCTCGGGTCATAAA CGAGACG GTA CGTCTCG TCTTGTGGCAGAGTA TERM 2537 6619877 - 6619911 + G 77 -15.1 -3.13403 | opp_overlap 6619877 6619878, overlap 6619875 CCGGCGCAGTGAGAA GT-CGCGGGTGGCCATC GTC GA-GGCCACCCGCGCGC TGTTGCTGGAACGCG TERM 2538 6619909 - 6619877 - g 82 -16.4 -3.35679 | gap 2, opp_overlap 6619875 6619877, overlap 6619878 CCGGCGCAGTGAGAA GTCGCGGGTGGCCATC GTC GA-GGCCACCCGCG-C GCTGTTGCTGGAACG TERM 2539 6619909 - 6619878 - g 73 -16.6 -2.61264 | gap 1, opp_overlap 6619877 6619875, overlap 6619877 CGGCGCAGTGAGAAG TCGCGGGTGGCCATC GTC GA-GGCCACCCGCGC GCTGTTGCTGGAACG MSMEG_6564 6619839 - 6620408 + | transcriptional regulator, TetR family protein MSMEG_6565 6621100 - 6620411 - | hypothetical protein MSMEG_6566 6621258 - 6621103 - | hypothetical protein TERM 2540 6622032 - 6622008 - gR 91 -20.1 -2.63596 | opp_overlap 6622012 CCGCACTCGACACCA TCGAGCACGGC ATC GCCGTGCTCGA TTCCCACGGACGTGT TERM 2541 6622012 - 6622028 + Gr 70 -13.7 -2.52464 | opp_overlap 6622008 ACTCGACACCATCGA GCACGGC ATC GCCGTGC TCGATTCCCACGGAC MSMEG_6567 6623729 - 6622524 - | iron-dependent peroxidase MSMEG_6568 6621461 - 6622585 + | regulatory protein, LuxR, putative TERM 2542 6623605 - 6623584 - GT 74 -14.5 -2.57132 | overlap 6623583 TGCGGTCCGTAGAAC GGTTCGGCA TCGG TGCCGAACC CGTGGTCGACGACAG MSMEG_6569 6624216 - 6623722 - | hypothetical protein TERM 2543 6624202 - 6624215 + g 72 -3.8 -4.53685 | opp_overlap 6624198 6624202, overlap 6624184 GACGGCGAAAACAAC TGCG CTGTTA CGCA TTTTCGTTCTGCTTT MSMEG_6570 6625588 - 6624209 - | integral membrane protein TERM 2544 6625678 - 6625659 - R 80 -15 -3.06261 | GCGCAACGGGTAACA GCCCGTCG GTGT CGACGGGC TCACATGAAGCGATG MSMEG_6571 6626244 - 6625702 - | hypothetical protein TERM 2545 6626065 - 6626040 - G 72 -6 -4.30576 | overlap 6626041 6626042 GCCCCACGATCAAAA GCGCAGTCGC GGCCGA GCGGGTGCGC GGCGAGAATCCGCCC MSMEG_6572 6626297 - 6626989 + | methyltransferase MSMEG_6573 6628662 - 6626995 - | hypothetical protein TERM 2546 6627192 - 6627207 + g 71 -2.4 -4.59773 | overlap 6627194 CTTGGTCGAGCAGTT CGGGTG GGAT CGCCGG TTTTTCGCCGTGGCC TERM 2547 6627733 - 6627762 + g 100 -13.6 -4.70626 | gap 1 GATGGATAGTTTGGT GCCGCCGGCGGTG ATCGC CACT-CCGGCGGC TTTTTCGAGTTCTTG TERM 2548 6627967 - 6627984 + g 76 -2.5 -4.7497 | overlap 6627960 GTCGGTGGGGTTGCA CATGCCG GGTG CGGCCAG TTTTTCGTCGATGGG TERM 2549 6628193 - 6628203 + g 81 -2.4 -5.06414 | TCGGCCCCGATGGCG CCGG TGA CCAG TTTTTCTTCCAGCCG MSMEG_6574 6628925 - 6629410 + | hypothetical protein MSMEG_6575 6629407 - 6630636 + | beta-lactamase MSMEG_6576 6631086 - 6630646 - | pyridoxamine 5'-phosphate oxidase family protein TERM 2550 6631288 - 6631266 - g 70 -12 -3.28924 | CACGGCGCGGCAGAA CATCGCCGAC CTG GTCGACGACG GATCGTTCGTCGAGT TERM 2551 6631392 - 6631425 + G 73 -13.1 -3.41051 | overlap 6631388 6631421 CGGTCTGGTGGCGGG CACCGCGCGCGTC GACGGGCA GCCGTGCGCGGTG TTGTCCTACGACTAC MSMEG_6577 6631138 - 6632682 + | methylmalonyl-CoA carboxyltransferase 12S subunit TERM 2552 6632760 - 6632797 + F 84 -13.3 -3.78934 | gap 1, overlap 6632759 CTGGTGCTGTGCCTG CGCAC-GCCGTCGGGGGC GCG GTACCCGGCGGCTGGGCG TTGTTCTCCAACCAG MSMEG_6578 6632857 - 6632961 + | hypothetical protein MSMEG_6579 6633239 - 6633637 + | hypothetical protein TERM 2553 6633671 - 6633713 + F 81 -14.2 -3.53091 | gap 1, opp_overlap 6633677, overlap 6633674 6633677 CTAGGGATCCCCGCA G-AGGAACTGCCCGTCGCC CCTCGA GGCGGCGGGCAGTTCTGAC TTTGCAAACACAAGT TERM 2554 6633674 - 6633709 + F 100 -22.7 -2.64155 | opp_overlap 6633677, overlap 6633671 6633677 GGGATCCCCGCAGAG GAACTGCCCGTCGCC CCTCGA GGCGGCGGGCAGTTC TGACTTTGCAAACAC TERM 2555 6633677 - 6633706 + F 93 -18.6 -3.47349 | opp_overlap 6633677, overlap 6633674 6633671 ATCCCCGCAGAGGAA CTGCCCGTCGCC CCTCGA GGCGGCGGGCAG TTCTGACTTTGCAAA TERM 2556 6633706 - 6633677 - f 89 -17.1 -3.25942 | opp_overlap 6633677 6633674 6633671 ATCCCCGCAGAGGAA CTGCCCGTCGCCC CTCG AGGCGGCGGGCAG TTCTGACTTTGCAAA MSMEG_6580 6633752 - 6634201 + | transcriptional regulator family protein MSMEG_6581 6634284 - 6634952 + | short chain dehydrogenase MSMEG_6583 6635047 - 6636249 + | antigen 85-C MSMEG_6582 6637394 - 6636246 - | pyridine nucleotide-disulphide oxidoreductase domain-containing protein TERM 2557 6638129 - 6638113 - g 72 -13.7 -3.15861 | overlap 6638116 GACGACGCTGATGAA CGAGCGC AGC GCGCTCG GCGGCAGCGGCAGCC MSMEG_6584 6637418 - 6638608 + | acyl-CoA dehydrogenase TERM 2558 6639176 - 6639198 + G 77 -14.8 -3.17051 | overlap 6639177 CACGGTCGAGCGCAT CGTCGACGGC GCT GCCGCCGACG TCTTCCTCGTCGCGG MSMEG_6585 6638601 - 6639872 + | acyl-CoA dehydrogenase MSMEG_6586 6639920 - 6640762 + | alpha/beta hydrolase, putative MSMEG_6588 6640759 - 6641664 + | fumarylacetoacetate hrpA 6645611 - 6641661 - | ATP-dependent helicase HrpA MSMEG_6589 6646724 - 6645663 - | ISMsm5, transposase MSMEG_6590 6646800 - 6647195 + | hypothetical protein MSMEG_6592 6647198 - 6648052 + | short-chain dehydrogenase/reductase SDR MSMEG_6591 6649758 - 6648028 - | aminotransferase, class V family protein TERM 2559 6648339 - 6648319 - G 74 -14.7 -3.0094 | GTTCACGCACAGACA GCCGACGGC GAC ACCGTCGGC GTCACGCAGGAACAA MSMEG_6593 6650522 - 6649755 - | ATP-binding protein MSMEG_6594 6651408 - 6650515 - | amino acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine MSMEG_6595 6652369 - 6651395 - | secreted protein TERM 2560 6651511 - 6651527 + g 78 -13.7 -3.61089 | overlap 6651505 GGGCCTTGGCCACCG CGTCGCG CAG CGCGACG TTGTCCTTGTTGAAG TERM 2561 6652546 - 6652518 - R 85 -4.6 -4.99638 | gap 1, overlap 6652521 AGAGGTACAGAAAAA TC-AGCCCTGGTC AGGC GACCAGTACTCGA GCATCTCGGCCAGGG MSMEG_6596 6653426 - 6652518 - | hypothetical protein TERM 2562 6653129 - 6653089 - G 83 -15.4 -3.54129 | gap 1, overlap 6653090 GAGATGCCGTCGAAA CCGGCGCCGC-TGAGCGCC GTCA GGCGCTCACGCAGCGCCTC CTCACCCAGGAACGA TERM 2563 6653128 - 6653090 - G 81 -18.9 -2.72263 | gap 1, overlap 6653089 AGATGCCGTCGAAAC CGGCGCCGC-TGAGCGCC GTCA GGCGCTCACGCAGCGCCT CCTCACCCAGGAACG MSMEG_6597 6653552 - 6654313 + | hydrolase of the alpha/beta superfamily protein MSMEG_6598 6654335 - 6654787 + | riboflavin synthase subunit beta MSMEG_6600 6656133 - 6657125 + | transposase MSMEG_6601 6657654 - 6657133 - | hypothetical protein MSMEG_6602 6658817 - 6657780 - | oxidoreductase TERM 2564 6657924 - 6657968 + g 70 -8.4 -3.85698 | GCTTCCGATGAGGTT GACGTCGCGGACCAGCTCGT CCGGT ACGGCCTTGGCGGCGGCGTC TTTCTCACCGGCGAG MSMEG_6603 6659215 - 6658820 - | NADH:flavin oxidoreductase/NADH oxidase MSMEG_6605 6659358 - 6659954 + | transcriptional regulatory protein MSMEG_6604 6660517 - 6659918 - | transcriptional regulator, TetR family protein MSMEG_6606 6661243 - 6660569 - | hypothetical protein MSMEG_6607 6662100 - 6661240 - | hypothetical protein MSMEG_6608 6663047 - 6662097 - | hypothetical protein MSMEG_6609 6663502 - 6663038 - | hypothetical protein TERM 2565 6663251 - 6663291 + Gg 76 -14 -3.40403 | gap 1, overlap 6663253 GCGGCTCAGTTCGGC GGCGGCCTGCGTGGCCGTG AGTT CACCGCCACGCA-GCCGTG TTGTAATGGCGCGCA TERM 2566 6663253 - 6663289 + Gg 89 -18.8 -3.27475 | gap 1, overlap 6663251 GGCTCAGTTCGGCGG CGGCCTGCGTGGCCGTG AGTT CACCGCCACGCA-GCCG TGTTGTAATGGCGCG MSMEG_6611 6663002 - 6663529 + | hypothetical protein MSMEG_6610 6664352 - 6663492 - | protein of unknown function DUF58, putative moxR 6665364 - 6664363 - | ATPase, MoxR family protein MSMEG_6613 6666287 - 6665394 - | hypothetical protein MSMEG_6614 6667543 - 6666377 - | integral membrane protein MSMEG_6615 6668242 - 6667571 - | hypothetical protein MSMEG_6616 6669426 - 6668245 - | S-(hydroxymethyl)glutathione dehydrogenase MSMEG_6617 6672791 - 6672072 - | nudix hydrolase MSMEG_6620 6674437 - 6674114 - | hypothetical protein MSMEG_6621 6675408 - 6674557 - | luciferase family protein MSMEG_6622 6675471 - 6676661 + | cytochrome P450 monooxygenase MSMEG_6623 6677446 - 6676667 - | dehydrogenase MSMEG_6624 6678007 - 6677450 - | hypothetical protein MSMEG_6625 6678462 - 6678040 - | glyoxalase family protein MSMEG_6626 6679242 - 6678469 - | short-chain dehydrogenase/reductase SDR MSMEG_6627 6679388 - 6680059 + | nitroreductase family protein MSMEG_6628 6680121 - 6680732 + | transcriptional regulator, TetR family protein MSMEG_6630 6680779 - 6681129 + | glyoxalase family protein mdcH 6682018 - 6681119 - | malonate decarboxylase, epsilon subunit TERM 2567 6681580 - 6681613 + g 70 -13.1 -3.32963 | gap 1 CGATCCACACCGTGG CGCGCGCCTCGGCG ACCAGTG CGCCG-GCCGCGCG TTGTCCCATCCCGGT mdcG 6682620 - 6682015 - | phosphoribosyl-dephospho-CoA transferase MSMEG_6632 6684233 - 6682617 - | beta subunit of malonate decarboxylase mdcC 6684538 - 6684230 - | malonate decarboxylase acyl carrier protein mdcB 6685389 - 6684526 - | triphosphoribosyl-dephospho-CoA synthase MdcB MSMEG_6635 6686005 - 6685394 - | alpha subunit of malonate decarboxylase MSMEG_6636 6687090 - 6686470 - | [Mn] superoxide dismutase MSMEG_6637 6687242 - 6687499 + | hypothetical protein metE 6689866 - 6687551 - | 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase MSMEG_6639 6690898 - 6690221 - | transcriptional regulator, GntR family protein, putative MSMEG_6640 6691068 - 6690946 - | hypothetical protein MSMEG_6641 6690967 - 6692328 + | nitrilotriacetate monooxygenase component A MSMEG_6642 6692329 - 6693528 + | caib/baif family protein MSMEG_6644 6693546 - 6694457 + | malyl-CoA lyase MSMEG_6643 6695859 - 6694441 - | DNA-binding protein TERM 2568 6696479 - 6696467 - g 70 -3.3 -4.4891 | overlap 6696468 6696471 TGCACCAGCACAAAA TCGAC CAT GTCGC CCACCTGGGCCCGTC MSMEG_6645 6695968 - 6697482 + | 2-methylcitrate dehydratase 2 prpB 6697479 - 6698396 + | methylisocitrate lyase MSMEG_6647 6698393 - 6699523 + | methylcitrate synthase pyc 6699516 - 6702911 + | pyruvate carboxylase MSMEG_6649 6703805 - 6702915 - | hypothetical protein MSMEG_6650 6704173 - 6704352 + | hypothetical protein TERM 2569 6704530 - 6704505 - T 70 -11.1 -3.40403 | gap 1, overlap 6704506 CCTCGGTTATGAGAA GCCGA-CCCGCC CAG GGCGGGGTCGGG CAACGTTCGCGACGG TERM 2570 6704529 - 6704506 - T 74 -14.6 -2.64099 | gap 1, overlap 6704505 CTCGGTTATGAGAAG CCGA-CCCGCC CAG GGCGGGGTCGG GCAACGTTCGCGACG MSMEG_6651 6704684 - 6704571 - | hypothetical protein MSMEG_6652 6705124 - 6704714 - | hypothetical protein TERM 2571 6704998 - 6705047 + g 79 -14.9 -3.31322 | opp_overlap 6705016 GGGGTATCCCTGATT CGCTGGCCAACGCGACAACGGTG TGGG CGCCGTTGCCGTGCTGGGCGGTG TTGTCCCGGATTCGG TERM 2572 6707992 - 6707970 - H 79 -6.3 -4.67943 | gap 2, overlap 6707965 6707972 CTGTAATAGACAAAA GC-CTG-CCGG CTA CCGGTCAGCGC GCGAGCCGGCTCGGT MSMEG_6654 6708371 - 6709774 + | TnpC protein TERM 2573 6709830 - 6709816 - T 75 -7.1 -4.38774 | overlap 6709818 6709829 AACATCACAGGAAAA GCTGG GCAGA CCAGC GGCTACAGGCTGCCC MSMEG_6655 6710645 - 6709869 - | hypothetical protein MSMEG_6656 6712219 - 6710711 - | hypothetical protein MSMEG_6657 6713342 - 6712209 - | alpha subunit of malonate decarboxylase MSMEG_6658 6714169 - 6713339 - | alpha/beta hydrolase fold TERM 2574 6713678 - 6713716 + g 75 -8.7 -4.15044 | ATCCGTCTCCCCCAC CGGTCCGGCCACCTGGT CGAAC AACTGGTGGTCGGGCAG TTTCTTGAGCACCGA TERM 2575 6714379 - 6714363 - H 72 -6.5 -4.25283 | opp_overlap 6714367 ACTCGGCGAGCAAAA TCGGTCA GGC TGTCCGA AGATGACAGCCAAGA MSMEG_6660 6714430 - 6715866 + | permease, cytosine/purines, uracil, thiamine, allantoin family protein MSMEG_6659 6716116 - 6715856 - | hypothetical protein TERM 2576 6716528 - 6716541 + GH 76 -8.1 -4.25104 | overlap 6716522 GATGGACCAGGTCGA CACCG GCGA CGGTG TTTTCATCACGGCCG MSMEG_6661 6716067 - 6716909 + | O-methyltransferase, putative MSMEG_6662 6716996 - 6717841 + | short chain dehydrogenase MSMEG_6663 6718588 - 6717845 - | C5-O-methyltransferase MSMEG_6664 6719460 - 6718615 - | methylenetetrahydrofolate reductase family protein, putative TERM 2577 6718908 - 6718871 - G 86 -21.3 -2.78463 | overlap 6718896 AGCCCTTGCAGCACA GCCGCAGACGCGGTGTC GGTG AACACCGCGACCGCGGC GATCACCGGGATCGT MSMEG_6665 6719912 - 6719637 - | integral membrane protein MSMEG_6666 6720425 - 6719967 - | hypothetical protein MSMEG_6667 6720974 - 6720444 - | hypothetical protein MSMEG_6668 6721204 - 6722343 + | ABC transporter, periplasmic substrate-binding protein, putative TERM 2578 6722363 - 6722400 + G 81 -18.5 -2.78596 | gap 1 CGTCAGCCGCGCGGT GGCC-GGCCCCGCCGA TGACATC TCGGTGGGGCCCGGCC TGTCGTCCGCACCTG MSMEG_6669 6722340 - 6723293 + | ABC transporter, permease protein MSMEG_6670 6723290 - 6724114 + | ABC transporter, permease protein, putative TERM 2579 6724581 - 6724525 - g 74 -15.8 -2.73364 | gap 2, opp_overlap 6724526, overlap 6724544 6724546 CCGTTACCCCAACCA GCTCTCGGGTGGCCAGCAACAGCGCGTG GCG CTCGCGCGGGCGCTGGC-ACCCGAGC-C TGATGTCCTGCTTCT MSMEG_6671 6724124 - 6725167 + | sulfate/thiosulfate import ATP-binding protein CysA MSMEG_6672 6725164 - 6726183 + | type I phosphodiesterase / nucleotide pyrophosphatase superfamily protein MSMEG_6673 6726242 - 6727711 + | 6-aminohexanoate-cyclic-dimer hydrolase MSMEG_6674 6728623 - 6727730 - | transcriptional regulator, LysR family protein MSMEG_6675 6728810 - 6728634 - | hypothetical protein MSMEG_6676 6728933 - 6729547 + | transmembrane protein TERM 2580 6729544 - 6729588 + TF 77 -8.5 -4.30978 | overlap 6729533 6729557 TTACGCCAGCCGTCC CTGACCGCTCGGCTTTGTCGG GAT CCGACAAATTCTGCTGGTCGG TTTTCGTCAATTCAC TERM 2581 6729557 - 6729575 + TF 75 -11.8 -3.44794 | overlap 6729544 CCCTGACCGCTCGGC TTTGTCGG GAT CCGACAAA TTCTGCTGGTCGGTT MSMEG_6677 6730969 - 6730109 - | transcriptional regulator, LysR family protein MSMEG_6678 6729674 - 6730159 + | hypothetical protein MSMEG_6679 6731106 - 6732014 + | metallo-beta-lactamase family protein MSMEG_6680 6732491 - 6732021 - | integral membrane protein MSMEG_6681 6732724 - 6732488 - | hypothetical protein MSMEG_6682 6733344 - 6732721 - | RNA polymerase sigma-70 factor, putative TERM 2582 6733564 - 6733594 + G 91 -11.3 -4.63218 | gap 1, opp_overlap 6733578, overlap 6733564 6733566 GCCATCGACCTGCCT G-ACCACTTCGAAG ACCG CTTCGGAGTGGTGC TTTTCTTCCGCGGCG TERM 2583 6733566 - 6733591 + G 74 -14.1 -3.25538 | opp_overlap 6733578, overlap 6733564 6733564 CATCGACCTGCCTGA CCACTTCGAAG ACCG CTTCGGAGTGG TGCTTTTCTTCCGCG MSMEG_6683 6733486 - 6733965 + | peroxiredoxin MSMEG_6684 6733962 - 6735056 + | agarase TERM 2584 6735647 - 6735621 - g 73 -12.3 -3.44051 | gap 1, opp_overlap 6735621 GGGCGATCACCAGAA GCGCACCGCGCT GTTC AGCACGG-GCGC CGAGGCCGTGGAGAA gabT 6735247 - 6736599 + | 4-aminobutyrate transaminase MSMEG_6686 6736619 - 6737812 + | glutaryl-CoA dehydrogenase TERM 2585 6738850 - 6738900 + G 72 -13.8 -3.14132 | GCACAGGGCGCCACG GTGCTCGCCGGTGGGCGGCCCTAC ACC GAAGGCCCGCTCGCCGAGGGGTAC TTCATCGCCCCGACC MSMEG_6687 6737809 - 6739272 + | aldehyde dehydrogenase, thermostable MSMEG_6689 6739269 - 6740372 + | CAIB/BAIF family protein TERM 2586 6740380 - 6740353 - T 72 -13.4 -3.06492 | gap 1 TGACCTACCGCAACA GCCCG-CCTCCGC TCA GCTGAGGCCGGGC CGTTCGCGGCTCACC MSMEG_6688 6741876 - 6740365 - | regulatory protein MSMEG_6690 6742682 - 6741873 - | glutamine amidotransferase class-I MSMEG_6691 6743425 - 6742679 - | glutamine amidotransferase MSMEG_6692 6744108 - 6743389 - | putative glutamine-binding periplasmic protein MSMEG_6693 6745490 - 6744105 - | glutamine synthetase III MSMEG_6694 6745684 - 6745496 - | hypothetical protein MSMEG_6695 6746932 - 6745730 - | cytochrome P450 MSMEG_6696 6747487 - 6747083 - | hypothetical protein MSMEG_6697 6747206 - 6748528 + | IS1096, tnpA protein MSMEG_6698 6749162 - 6748536 - | IS1096, tnpR protein MSMEG_6699 6750064 - 6749195 - | hypothetical protein MSMEG_6700 6750798 - 6750061 - | regulatory protein TERM 2587 6750437 - 6750403 - G 71 -11.2 -3.63515 | GGTCAGCGCGAACAA CCGCCGCACGGTCGAC GGA GCGGCCCGCTCGGCGG CCAATCGGGCGGCCT MSMEG_6701 6750984 - 6752480 + | amino acid permease MSMEG_6702 6752526 - 6753908 + | [NADP+] succinate-semialdehyde dehydrogenase MSMEG_6703 6753954 - 6754784 + | N5,N10- methylenetetrahydromethanopterin reductase-related protein MSMEG_6705 6754873 - 6755619 + | regulatory protein MSMEG_6704 6756428 - 6755616 - | shikimate 5-dehydrogenase TERM 2588 6756008 - 6755965 - Gf 87 -17.4 -2.87931 | TCGACGTCGGAGACA TCCACCGCACTCGCACCTGC GTCG GCAAGGGCGAGCGCGATGGC AGAACCCGCTCCCCC MSMEG_6706 6756557 - 6756453 - | hypothetical protein MSMEG_6707 6756213 - 6756533 + | hypothetical protein MSMEG_6708 6756549 - 6757454 + | epoxide hydrolase MSMEG_6709 6757445 - 6758197 + | cyclopentanol dehydrogenase MSMEG_6710 6758217 - 6759065 + | hydrolase, alpha/beta fold family protein TERM 2589 6759075 - 6759112 + T 100 -19.9 -3.62096 | opp_overlap 6759080, overlap 6759076 6759080 ATCTGACCGCTCACG AGAAAGCCGCCCCGGTT GTCC AACCGGGGCGGCTCTCG TTTGCCCTCATGCGG TERM 2590 6759076 - 6759111 + T 100 -23.4 -2.77043 | opp_overlap 6759080, overlap 6759075 6759080 TCTGACCGCTCACGA GAAAGCCGCCCCGGTT GTCC AACCGGGGCGGCTCTC GTTTGCCCTCATGCG TERM 2591 6759107 - 6759080 - T 100 -22.8 -3.96327 | opp_overlap 6759076 6759075 6759080 ACCGCTCACGAGAAA GCCGCCCCGGTT GTCC AACCGGGGCGGC TCTCGTTTGCCCTCA TERM 2592 6759080 - 6759107 + T 100 -22.8 -3.01497 | opp_overlap 6759080, overlap 6759076 6759075 ACCGCTCACGAGAAA GCCGCCCCGGTT GTCC AACCGGGGCGGC TCTCGTTTGCCCTCA MSMEG_6711 6760487 - 6759120 - | 4-hydroxybenzoate transporter MSMEG_6712 6761582 - 6760497 - | maleylacetate reductase MSMEG_6713 6762454 - 6761579 - | hydroxyquinol 1,2-dioxygenase MSMEG_6714 6763068 - 6762451 - | hypothetical protein MSMEG_6715 6763271 - 6764110 + | AP endonuclease, family protein 2 MSMEG_6716 6764137 - 6764958 + | AP endonuclease, family protein 2 MSMEG_6717 6764976 - 6766046 + | oxidoreductase, Gfo/Idh/MocA family protein TERM 2593 6766613 - 6766643 + G 86 -19 -3.21099 | GTCAGGATTCCCCAG CGGCGCCGCGATCG GCG CGGTCGTGGTGCCG TTCGTCGTCGAGACG MSMEG_6718 6766137 - 6767504 + | transporter, major facilitator family protein MSMEG_6719 6767501 - 6768358 + | epoxide hydrolase TERM 2594 6768408 - 6768377 - T 78 -13.6 -3.21099 | opp_overlap 6768378 6768400 6768401, overlap 6768378 CCCGCCGAGGAGGAA CCCCCGCAGCGCCG CAGC CAGCTCTGCGGGGT TCTCTTCGGCCGGGT TERM 2595 6768407 - 6768378 - T 80 -17.1 -2.52516 | opp_overlap 6768378 6768400 6768401, overlap 6768377 CCGCCGAGGAGGAAC CCCCGCAGCGCCG CAGC CAGCTCTGCGGGG TTCTCTTCGGCCGGG TERM 2596 6768378 - 6768407 + T 87 -14.9 -3.65812 | opp_overlap 6768378 6768377, overlap 6768400 6768401 CCGCCGAGGAGGAAC CCCCGCAGCGCCG CAGC CAGCTCTGCGGGG TTCTCTTCGGCCGGG MSMEG_6720 6769222 - 6768359 - | epoxide hydrolase TERM 2597 6768495 - 6768541 + g 88 -12.3 -4.36914 | gap 1, overlap 6768497 6768520 GTCTCGGTGCTGTGG CCGGC-CTGCCCGTGTTCGC CTTCGACC GCGAGCACGGGCATCGCCAG TTTTGTGCGCCCCAG MSMEG_6721 6769355 - 6769236 - | hypothetical protein MSMEG_6722 6769511 - 6770410 + | hypothetical protein MSMEG_6723 6771022 - 6770504 - | hypothetical protein MSMEG_6724 6771791 - 6771009 - | ABC-type cobalt transport system MSMEG_6725 6773263 - 6771788 - | ABC transporter, ATP-binding protein MSMEG_6726 6773889 - 6773260 - | ABC transporter, permease protein TERM 2598 6773795 - 6773769 - G 76 -7.8 -4.33274 | overlap 6773770 TCCACATCACGAAAA CCAGGCCCGCGG CGA CCGCGAGCACGC TGGCCACCACGATGT MSMEG_6727 6774109 - 6775455 + | amino acid permease-associated region MSMEG_6728 6775459 - 6775947 + | hypothetical protein MSMEG_6729 6777760 - 6776891 - | DNA-binding protein MSMEG_6730 6776043 - 6776948 + | putative oxidoreductase YdbC MSMEG_6731 6777839 - 6778417 + | transcriptional regulatory protein TERM 2599 6778528 - 6778511 - f 73 -5.5 -4.42386 | CTGGTAGGTAGAAAA CCGCTCG ACTA CGAACAG GAAACCCATGGCCAG TERM 2600 6778847 - 6778860 + G 78 -9.5 -4.13014 | opp_overlap 6778847 CGCGATGAGCATGAA CGCCG TGCT CGGCG TTTTCGGCGTGTGGG MSMEG_6732 6778536 - 6779126 + | integral membrane protein MSMEG_6733 6779912 - 6779127 - | hydrolase, carbon-nitrogen family protein MSMEG_6734 6781251 - 6779938 - | dibenzothiophene desulfurization enzyme A MSMEG_6735 6782720 - 6781284 - | amino acid permease, putative MSMEG_6736 6783850 - 6782849 - | LacI-family protein transcriptional regulator MSMEG_6737 6784100 - 6785038 + | hypothetical protein MSMEG_6738 6785728 - 6785045 - | transcriptional regulator YdhC MSMEG_6739 6785888 - 6786334 + | hypothetical protein TERM 2601 6786498 - 6786455 - f 78 -14 -3.28712 | opp_overlap 6786468 GCTTGCCGTTGACAA TGCCGCTGAGGAATGTGCAA TATA TTGCACATTCCTCAGCCTGA TGGCGTCGGCCCGTC MSMEG_6740 6786544 - 6787548 + | 1-aminocyclopropane-1-carboxylate deaminase MSMEG_6741 6788229 - 6787549 - | ANTAR domain-containing protein MSMEG_6742 6788818 - 6788255 - | hypothetical protein MSMEG_6743 6788941 - 6789396 + | lactoylglutathione lyase MSMEG_6744 6789407 - 6790261 + | oxidoreductase FAD/NAD MSMEG_6745 6790305 - 6791048 + | transcriptional regulator, GntR family protein MSMEG_6746 6792122 - 6791052 - | oxidoreductase, aldo/keto reductase family protein TERM 2602 6792234 - 6792224 - H 81 -3.2 -5.07486 | CAGGTGGAATAAAAA CCAC AAT GTGA CGGTCTGTGTAGGCA MSMEG_6747 6792281 - 6793198 + | oxidoreductase MSMEG_6748 6794875 - 6793199 - | ABC transporter ATPase MSMEG_6749 6795121 - 6794909 - | hypothetical protein MSMEG_6750 6795962 - 6795153 - | hypothetical protein TERM 2603 6795327 - 6795360 + g 74 -12.3 -3.64487 | opp_overlap 6795341 GTCGGCATAGGGTTC GGGCCAGCCGAACAC CGCG GTGTACTGCGGGCCC TTGTTGAGCATGTGC TERM 2604 6795663 - 6795635 - G 74 -15.9 -2.78384 | opp_overlap 6795651 CCTGCTCCCAGTACA CCTGCGCGGCGCC CGC GGCGCCGCGCACC GCGACGCCTTCGTCC TERM 2605 6795651 - 6795671 + g 72 -13.9 -3.14132 | opp_overlap 6795635 CTGCGCGGCGCCCGC GGCGCCGCG CAC CGCGACGCC TTCGTCCCACAGAGC MSMEG_6751 6796078 - 6796293 + | hypothetical protein MSMEG_6752 6797238 - 6796297 - | endoglucanase A MSMEG_6753 6797368 - 6798090 + | oxidoreductase, short chain dehydrogenase/reductase family protein TERM 2606 6798211 - 6798198 - f 78 -3.7 -4.82901 | TCTGTCGGACAAAAA CCGGC GCGT GACGG CTGGGTCAAATTTCG MSMEG_6754 6798433 - 6799461 + | MaoC like domain-containing protein MSMEG_6755 6799518 - 6800441 + | isoflavone reductase glpK 6801983 - 6800466 - | glycerol kinase MSMEG_6757 6802741 - 6801980 - | glycerol operon regulatory protein TERM 2607 6802803 - 6802761 - H 89 -14.8 -3.80573 | opp_overlap 6802772, overlap 6802762 TTCAGGATCACCAAA TCGTTCGACCATGTCGACCC CGA GGGTCGGCATTGTCGACCGG GGCCGTGTTCGGCGA TERM 2608 6802802 - 6802762 - H 89 -18.3 -2.88023 | opp_overlap 6802772, overlap 6802761 TCAGGATCACCAAAT CGTTCGACCATGTCGACCC CGA GGGTCGGCATTGTCGACCG GGGCCGTGTTCGGCG TERM 2609 6802772 - 6802792 + H 74 -13.3 -3.28712 | opp_overlap 6802762 6802761 CAAATCGTTCGACCA TGTCGACCC CGA GGGTCGGCA TTGTCGACCGGGGCC MSMEG_6758 6802924 - 6803739 + | transport integral membrane protein glpK 6803763 - 6805280 + | glycerol kinase TERM 2610 6806533 - 6806586 + G 74 -16.8 -2.79133 | gap 3 CCCGGCCGCGTGGAA CGCGCG-CCGTCG-CACCGCCGAGGAC ACC GGTCT-GGCGGTGACGACGGTCGCGCA TCTGCTGGGGCGTTA MSMEG_6761 6805277 - 6806983 + | glycerol-3-phosphate dehydrogenase 2 MSMEG_6760 6807458 - 6806973 - | hypothetical protein MSMEG_6762 6807807 - 6807460 - | transcriptional regulator TERM 2611 6807690 - 6807668 - G 71 -11.3 -3.53811 | opp_overlap 6807658 TGCACCGCCGCGAAA CTCACGTCG TACTT CGACGCGAG CGCAGAGACCGATTG TERM 2612 6807831 - 6807810 - R 78 -13.1 -3.51924 | opp_overlap 6807810 CGGTCACCCACACAA CGTACAACC ATCT GGTTGTACG TTGTCAAGCCTCTTG TERM 2613 6807810 - 6807831 + r 77 -13.1 -3.31248 | opp_overlap 6807810 CGGTCACCCACACAA CGTACAACC ATCT GGTTGTACG TTGTCAAGCCTCTTG MSMEG_6763 6808677 - 6807853 - | oxidoreductase MSMEG_6764 6808750 - 6809331 + | transcriptional regulator, TetR family protein MSMEG_6765 6810183 - 6809341 - | ABC-2 type transporter superfamily protein MSMEG_6766 6811019 - 6810183 - | ABC transporter, ATP-binding protein, NodI family protein MSMEG_6767 6816496 - 6811016 - | mycocerosic acid synthase TERM 2614 6812111 - 6812143 + g 74 -14.9 -3.09516 | overlap 6812113 GCGTTCGATCGCCCG GATGGCGTCCACCGT CGC GTGGTGGGCGTCATC TTCGGTGATCGAGGC TERM 2615 6813411 - 6813446 + g 72 -13.2 -3.17392 | gap 1, overlap 6813412 GTGACCGCACCGCCG C-CGGTGTCCCCCGCGC GCG GCGCGCGGGGCAACGTG TTGAGTTCAGCGGTC TERM 2616 6813412 - 6813444 + g 80 -16.9 -3.14878 | overlap 6813411 TGACCGCACCGCCGC CGGTGTCCCCCGCGC GCG GCGCGCGGGGCAACG TGTTGAGTTCAGCGG TERM 2617 6814919 - 6814945 + g 70 -12.2 -3.28924 | overlap 6814929 CCGTCCGGCGGAGAT CTGCCCGCCGTC GGC GACGGCCTGCAG TTGTCGGCGCGCCTC MSMEG_6768 6818328 - 6816577 - | halogenase MSMEG_6769 6819639 - 6818359 - | transporter, monovalent cation:proton antiporter-2 (CPA2) family protein TERM 2618 6818612 - 6818572 - G 72 -13.9 -3.14132 | GCGGGCGTTCATCAA CGAGCCCAGCGCCAGTGAG TCG CGCACCGGCACCCGGCTCA GGCGCGCCGCGACCG MSMEG_6770 6819891 - 6820289 + | hypothetical protein MSMEG_6771 6820316 - 6820858 + | hypothetical protein TERM 2619 6821521 - 6821548 + G 75 -4.6 -4.57341 | opp_overlap 6821511 CCAAGGGCATTCGCG CCGCGGCGCGCG TGTA CGCGGGATGGGG TTTTTCCCAGGCGTT MSMEG_6772 6820932 - 6821960 + | hypothetical protein MSMEG_6773 6822091 - 6823278 + | CaiB/BaiF family protein TERM 2620 6823593 - 6823641 + G 72 -14.4 -3.13475 | gap 1, overlap 6823635 GGCACTGCACGGGCT CGAGGTGCCCTCGGTCGCGGCCG TCAA CGGT-GCGGCCGTGGGCGCCGGG TTCGATCTCGCGTTG MSMEG_6774 6823288 - 6824070 + | enoyl-CoA hydratase MSMEG_6775 6824092 - 6825447 + | major facilitator superfamily protein transporter MSMEG_6776 6825514 - 6826359 + | transcriptional regulator, LysR family protein MSMEG_6777 6826399 - 6827178 + | enoyl-CoA hydratase MSMEG_6778 6827630 - 6827190 - | hypothetical protein MSMEG_6779 6828323 - 6827676 - | hypothetical protein MSMEG_6780 6828361 - 6829233 + | phenazine biosynthesis protein PhzF MSMEG_6781 6830718 - 6829246 - | hypothetical protein MSMEG_6782 6830819 - 6831088 + | hypothetical protein MSMEG_6783 6832159 - 6831167 - | integral membrane protein MSMEG_6784 6833286 - 6832219 - | beta-lactamase MSMEG_6786 6833391 - 6833990 + | hypothetical protein tpiA 6834760 - 6833969 - | triosephosphate isomerase TERM 2621 6834187 - 6834203 + g 74 -13.7 -3.30124 | opp_overlap 6834167 GCCGCAGTTCCTCGA CGGTCGC CGG GCGACCG TTCTCGCCGATCGCC MSMEG_6787 6835211 - 6834753 - | ribose 5-phosphate isomerase TERM 2622 6835141 - 6835096 - G 73 -16.7 -2.62184 | opp_overlap 6835094 6835140, overlap 6835077 GTGTCGTCGACACCA CCGACGCCGACGTCCTCGACG GACG CGACGCGGTCGTCGGCCTCGA GGTCCTTGCGCAGGG MSMEG_6788 6836971 - 6835256 - | dihydroxyacetone kinase MSMEG_6789 6837840 - 6837064 - | transcriptional regulator, GntR family protein TERM 2623 6838184 - 6838208 + G 70 -12.7 -3.28712 | opp_overlap 6838174 CCACATCGATCCCAC CGACGCCTGGG TTC CCCTGGCGGCG TTGTCGGACAGCCGC MSMEG_6790 6838029 - 6838949 + | AP endonuclease, family protein 2 MSMEG_6791 6838975 - 6839937 + | 3-hydroxybutyryl-CoA dehydrogenase MSMEG_6792 6840005 - 6841405 + | inner membrane permease YgbN MSMEG_6793 6842814 - 6841426 - | hypothetical protein MSMEG_6794 6843767 - 6842901 - | DNA-binding protein TERM 2624 6843697 - 6843652 - G 76 -13.4 -3.53012 | gap 3, overlap 6843653 6843655 TCGCTGCGCCGCAAA CCAGG-TACCCGCCGCTCGGCGA CCC TCGCCG--CGGCGGGCAGCCCGA CGCTGTCGGGCCGCA TERM 2625 6843696 - 6843653 - G 70 -14.7 -2.71712 | gap 3, overlap 6843652 6843655 CGCTGCGCCGCAAAC CAGG-TACCCGCCGCTCGGCGA CCC TCGCCG--CGGCGGGCAGCCCG ACGCTGTCGGGCCGC MSMEG_6795 6843947 - 6844789 + | enoyl-CoA hydratase/isomerase family protein MSMEG_6796 6844782 - 6845168 + | hypothetical protein MSMEG_6797 6845184 - 6845597 + | carboxymuconolactone decarboxylase TERM 2626 6845878 - 6845854 - T 74 -11.4 -3.63515 | gap 1, opp_overlap 6845862, overlap 6845855 GGTCATCGGCAACAA GGTCGGGGCCA CCCG CGGCCCCG-CC GGTGAGTGGCTTCAC rbsR 6847553 - 6846555 - | ribose operon repressor frcK 6848200 - 6847550 - | putative fructose transport system kinase MSMEG_6801 6849126 - 6848197 - | kinase, pfkB family protein TERM 2627 6849087 - 6849097 + g 78 -8.2 -4.25104 | opp_overlap 6849073, overlap 6849077 AGACCCCGACCGGGG CCCG TTG CGGG TTTTCCTCAGAGACC MSMEG_6802 6849895 - 6849104 - | ABC transporter ATP-binding protein MSMEG_6803 6850911 - 6849892 - | ribose transport system permease protein RbsC MSMEG_6804 6851911 - 6850913 - | sugar ABC transporter substrate-binding protein TERM 2628 6851971 - 6852006 + H 100 -11.8 -4.67168 | opp_overlap 6851971, overlap 6851935 6851973 GTGCATCACACTAGA CGGCGCGCAAGCGCTT GCGT AAGCGCTTTCGCGAAG TTTTTCGGACTTTTT TERM 2629 6852113 - 6852080 - g 78 -6.5 -4.58395 | GCCACGGCGGAAAAA CGCGCTGCACGCCGC CACC GCGTCACGCACGGCG CGCTACCGTCGACCG MSMEG_6805 6852036 - 6853556 + | beta-lactamase uvrA 6856158 - 6853636 - | excinuclease ABC, A subunit TERM 2630 6855963 - 6855940 - G 73 -10.3 -3.9461 | gap 1 CTGCGGCAACAACAA TCGG-CGCGC GTACG GCGCGACCGA CTCGAAGTAACGGCG MSMEG_6807 6856793 - 6856188 - | transcriptional regulator, TetR family protein TERM 2631 6857717 - 6857764 + G 73 -12.8 -3.53012 | gap 2, opp_overlap 6857753 6857754 GTTCTTCACCGACGA CCGCGGCCGCACCGTCGTCGAG AAGGGA CTCGACAAC-GTGCG-CGGCGG TTTCGCCAAGCAACA MSMEG_6808 6856899 - 6858059 + | hypothetical protein cbbQ 6858052 - 6858855 + | CbbQ protein MSMEG_6811 6861881 - 6860658 - | hypothetical protein MSMEG_6813 6863963 - 6863010 - | amidohydrolase 2 MSMEG_6814 6864069 - 6864503 + | helix-turn-helix, Fis-type MSMEG_6815 6864557 - 6865342 + | secreted protein MSMEG_6816 6865435 - 6867597 + | molybdopterin oxidoreductase MSMEG_6817 6868491 - 6867601 - | RNA polymerase sigma factor, sigma-70 family protein MSMEG_6818 6869674 - 6868472 - | dehydrogenase TERM 2632 6870121 - 6870154 + H 77 -11 -3.78934 | gap 1, opp_overlap 6870119 6870123 CTCCCTGTACGAACT CACGTTGACCGAGGG CCTCA CCCACGGTC-GCGTG TTGTTGTCCGGACCG TERM 2633 6871071 - 6871049 - g 70 -14.8 -2.77899 | overlap 6871046 GTCGGGCATCAACCA CGGCGCGAAC GTC GGTCGCGCCG TCCTGCACTCGGGCA surE 6870741 - 6871520 + | acid phosphatase SurE MSMEG_6821 6872626 - 6871529 - | NLP/P60 family protein TERM 2634 6873570 - 6873512 - g 75 -16.1 -2.83715 | gap 2 TCCACTACTACGACA TGTTGCTCAACGGTGGCGGCGGCCTGCCC CGC GAGCAGGCCGACGTCATCGTCGA-CAAC- CTCGCGCACTTCACA MSMEG_6822 6872926 - 6873837 + | beta-lactamase MSMEG_6823 6874579 - 6873845 - | short-chain dehydrogenase/reductase SDR TERM 2635 6874642 - 6874674 + rH 71 -12 -3.21593 | gap 1, overlap 6874640 6874642 GATATGTCACCTATT CCC-TGGTGGGCAGG AACT CGTGCCCACCGTGGG TCTTGTGCACGAATC MSMEG_6824 6875474 - 6874761 - | MarR-family protein regulatory protein TERM 2636 6875238 - 6875252 + gH 81 -2.1 -5.00884 | gap 1 CAGCCATCCTCGTTT CGGTGA TATG TC-CCG TTTTTTCGCCGGCGT MSMEG_6825 6875373 - 6876185 + | caax amino protease family protein, putative TERM 2637 6876491 - 6876511 + G 77 -11.1 -3.94634 | overlap 6876492 6876507 TCCCTGTTGGCGGCC TCCGAGGGC GCG GCCTTCGGG TTCTTTCCGATCCTG TERM 2638 6877856 - 6877816 - g 70 -12.5 -3.28712 | GGTCTCGCCGCAGAA CCTTGCCATCGCGGCCG CGGCAGT CGGCCTCAACGGCAGGG AAGGCGACATCTTCC MSMEG_6826 6876287 - 6877969 + | L-lactate permease MSMEG_6827 6878119 - 6877979 - | hypothetical protein MSMEG_6828 6880826 - 6878097 - | transcriptional regulator TERM 2639 6880469 - 6880451 - G 72 -13.8 -3.18023 | overlap 6880449 CGATCACCAGGAACA GCCGCCGA TTG CCGGCGGC CTCCTCCAAAAGGCC TERM 2640 6880872 - 6880848 - H 73 -14.4 -2.83112 | opp_overlap 6880843 ACCGAAGGTAGCACA GCTGAGTTGG TCCGG CCAACTCAGC TAGACTGTTCAGGTG MSMEG_6829 6880885 - 6881337 + | transcriptional regulatory protein MSMEG_6830 6881399 - 6882127 + | hypothetical protein MSMEG_6831 6882982 - 6882131 - | hydrolase, alpha/beta hydrolase fold family protein MSMEG_6832 6883624 - 6883001 - | hypothetical protein MSMEG_6833 6883673 - 6884752 + | alcohol dehydrogenase MSMEG_6834 6884787 - 6885815 + | alcohol dehydrogenase MSMEG_6835 6887229 - 6885835 - | Fatty acid desaturase TERM 2641 6885901 - 6885870 - G 87 -17.2 -3.26471 | opp_overlap 6885840 GTAGCTGGACAGCAA CGCCGCCGGACGCG TGTT CGGGTCCGGCGTCG GGATGCTCGGCCGGT TERM 2642 6886792 - 6886809 + g 75 -9.9 -4.05446 | overlap 6886772 CGGATCGATCCGCAT GATCTCG TACC CGAGATC TTTGTCCTTGCCCAG TERM 2643 6887273 - 6887289 + r 79 -11.5 -3.87815 | AGAGTTCGATTTCGA CGTCGCC TTC GGCGGCG TTTATGCAGATGCGG MSMEG_6836 6887666 - 6887256 - | putative oxidoreductase MSMEG_6838 6887818 - 6888333 + | putative esterase MSMEG_6837 6889229 - 6888294 - | haloalkane dehalogenase MSMEG_6839 6889400 - 6890398 + | transcriptional regulator, AraC family protein MSMEG_6840 6891297 - 6890416 - | LysR-family protein transcriptional regulator MSMEG_6841 6891446 - 6891315 - | hypothetical protein MSMEG_6842 6891408 - 6892730 + | 2,2-dialkylglycine decarboxylase MSMEG_6843 6893557 - 6892736 - | NAD-dependent epimerase/dehydratase MSMEG_6844 6894623 - 6893571 - | trap-t family protein transporter, dctp TERM 2644 6894559 - 6894536 - G 77 -14.6 -3.17194 | gap 1, opp_overlap 6894540 AGGCGGCCAAGGGAA CTGCGGCCAGC GAC GC-GGCCGCAG CAGCGCCGGCCTTGA MSMEG_6845 6895931 - 6894636 - | trap dicarboxylate transporter, dctm subunit MSMEG_6846 6896453 - 6895944 - | putative C4 decarboxylate transport protein MSMEG_6847 6897615 - 6896461 - | hypothetical protein MSMEG_6848 6899045 - 6897798 - | putative oxidoreductase MSMEG_6849 6900023 - 6899091 - | LysR-family protein transcriptional regulator MSMEG_6850 6900106 - 6900822 + | alpha/beta hydrolase MSMEG_6852 6900861 - 6901784 + | putative carboxylesterase/lipase MSMEG_6851 6902308 - 6901769 - | phosphatidylethanolamine-binding protein MSMEG_6853 6902853 - 6902305 - | 3-isopropylmalate dehydratase small subunit MSMEG_6854 6904118 - 6902850 - | 3-isopropylmalate dehydratase large subunit MSMEG_6855 6905010 - 6904120 - | carboxyvinyl-carboxyphosphonate phosphorylmutase MSMEG_6856 6906443 - 6905010 - | MmgE/PrpD family protein MSMEG_6857 6906505 - 6907275 + | putative transcription regulator MSMEG_6858 6908395 - 6907277 - | epoxide hydrolase 1 MSMEG_6859 6909201 - 6908449 - | oxidoreductase MSMEG_6860 6909740 - 6909291 - | hypothetical protein MSMEG_6861 6910366 - 6909812 - | cupin domain-containing protein TERM 2645 6910631 - 6910652 + G 72 -4.3 -4.64598 | opp_overlap 6910629 6910630, overlap 6910645 CGAGATCGCCAAACG GGCTCGTGT GACC ACCCGAACC TTTTTCCGGTACTTC TERM 2646 6910697 - 6910718 + G 70 -12.9 -3.34013 | AGTGGTGTTCGCCGA CGCCGAGCG GCTG CGCGCGGCG TTGATTCAGCAACTC MSMEG_6862 6910524 - 6911108 + | putative transcription regulator TERM 2647 6911151 - 6911120 - g 70 -12.2 -3.28188 | overlap 6911112 ATGAAAATGGAGCAA CGCAGCCCCGCCCC GACG GAGGCCGAACTGCG CCGAGAACTGGCCGC MSMEG_6863 6911105 - 6911872 + | hypothetical protein MSMEG_6864 6912752 - 6912063 - | putative transcription regulator TERM 2648 6912121 - 6912104 - G 78 -12.7 -3.72027 | ACGGCGCAGTAAGAA CCGCCGA GGCG TCGGCGG CGGCCGACCGCACCA MSMEG_6865 6912890 - 6914365 + | ABC transporter solute binding lipoprotein TERM 2649 6915173 - 6915186 + G 70 -3.8 -4.46212 | overlap 6915133 6915156 ACTCGGCGGCGCGAT CCTG ACCGAG CAGG TTTTCTCCTGGCCGG MSMEG_6866 6914358 - 6915356 + | dipeptide transport system permease protein DppB MSMEG_6867 6915356 - 6916180 + | oligopeptide ABC transporter integral membrane protein MSMEG_6869 6918790 - 6917828 - | regulatory protein MSMEG_6870 6918823 - 6919647 + | creatinine amidohydrolase MSMEG_6871 6919644 - 6920771 + | isomerase MSMEG_6872 6920768 - 6921817 + | beta-lactamase MSMEG_6874 6924056 - 6922554 - | aldehyde dehydrogenase MSMEG_6875 6925229 - 6924099 - | endoribonuclease L-PSP family protein TERM 2650 6924465 - 6924489 + g 81 -9.9 -4.37092 | CACCCCGACGATGAG GTACGGCGGCG GGT TGCCGTCGAAC TTTTCTCGCCACAGT MSMEG_6876 6926043 - 6925321 - | branched chain amino acid transport ATP-binding protein TERM 2651 6925721 - 6925750 + g 74 -14.3 -3.28924 | GCGCTGACCTTGGAG CGTCCGAGTGGCA TCAG TGCCACCCGGATG TTCTCCAGGACAGTG MSMEG_6877 6926819 - 6926040 - | branched-chain amino acid transport system ATP-binding protein MSMEG_6878 6927790 - 6926816 - | inner-membrane translocator MSMEG_6879 6928701 - 6927790 - | integral membrane protein of the ABC-type Nat permease for neutral amino acids NatD MSMEG_6880 6930018 - 6928729 - | hydrophobic amino acid ABC transporter, putative MSMEG_6881 6930722 - 6930093 - | transcriptional regulator, GntR family protein MSMEG_6882 6932188 - 6931229 - | LysR-family protein transcriptional regulator MSMEG_6884 6932415 - 6932957 + | NADP oxidoreductase, coenzyme f420-dependent:6-phosphogluconate dehydrogenase, NAD-binding, putative MSMEG_6885 6933023 - 6933847 + | MmcI protein MSMEG_6886 6934254 - 6933892 - | transcriptional regulator MSMEG_6887 6934366 - 6935613 + | amidohydrolase family protein MSMEG_6888 6936627 - 6935806 - | transposase subunit MSMEG_6889 6936968 - 6936660 - | transposase MSMEG_6890 6937052 - 6937345 + | antibiotic biosynthesis monooxygenase domain-containing protein MSMEG_6892 6941058 - 6937984 - | replicative DNA helicase TERM 2652 6941203 - 6941220 + Gr 76 -14.1 -3.14229 | overlap 6941201 CTAGACGTTGCTGGA GGCCGGG AAAA CCCGGCC TGTTCATCAACCTGT MSMEG_6893 6941041 - 6941307 + | hypothetical protein TERM 2653 6941544 - 6941507 - TR 100 -22.8 -3.32022 | opp_overlap 6941520, overlap 6941475 GCGGGCATACAGCAA CGCCCGGGTGGGAACC GTGACG GGTTCCTACCCGGGCG TATGACTGCCGACCG rplI 6942043 - 6941588 - | 50S ribosomal protein L9 rpsR 6942316 - 6942062 - | 30S ribosomal protein S18 MSMEG_6896 6942851 - 6942354 - | single-strand DNA-binding protein rpsF 6943196 - 6942924 - | 30S ribosomal protein S6 MSMEG_6898 6944188 - 6943613 - | hypothetical protein MSMEG_6899 6945618 - 6943954 - | hypothetical protein TERM 2654 6944247 - 6944236 - GR 78 -5.8 -4.56597 | CGTGGTGGTGAAAAA CTGC TCGG GCAG GCCCTTGTTGGACTC MSMEG_6900 6947972 - 6945615 - | penicillin-binding protein 1 TERM 2655 6947824 - 6947861 + g 73 -12.5 -3.53012 | overlap 6947786 CCCGGTCCGGACGGA CCTCCGCCGCCTCTTCC AGGC GGCGGCGGTGGCGGCGG TTTCGGCGGCGGGGA MSMEG_6901 6948579 - 6948091 - | hypothetical protein MSMEG_6902 6948592 - 6949461 + | hypothetical protein MSMEG_6903 6949596 - 6950150 + | transcriptional regulator, PadR family protein TERM 2656 6950196 - 6950186 - f 72 -8.2 -3.95378 | TGACATTGCAAACAA GGCC GCT GGCC GAGCAATACGGAACG MSMEG_6904 6950228 - 6951319 + | myo-inositol-1-phosphate synthase TERM 2657 6951331 - 6951372 + F 100 -25.5 -2.53876 | CTGATCCTCGCGTGA TTTGTGGAGTCTTACCGGC AGGC GCTGGTAAGACTCCACAAA TCGCTTAGGGTCGGG TERM 2658 6951966 - 6952006 + G 74 -15.3 -3.02511 | GGACGTGACCGTGCA GGCCGCGCCGCACCGTG ACCGGAA CTCGTTGCGGCGCGGCG TCTTCCACAACTCGA MSMEG_6906 6951391 - 6952305 + | putative hydrolase MSMEG_6907 6952349 - 6953122 + | MmcI protein TERM 2659 6953251 - 6953240 - g 72 -5.8 -4.32857 | overlap 6953245 GGGGTCAAAGAGAAA GACC AGGT GGTC AGCCACATCATCAAC MSMEG_6908 6953210 - 6953875 + | putative HTH-type transcriptional regulator MSMEG_6909 6953922 - 6955694 + | amino acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family protein MSMEG_6911 6955694 - 6956431 + | ABC transporter, ATP-binding protein GluA MSMEG_6913 6956496 - 6956996 + | putative transcriptional regulatory protein MSMEG_6914 6958345 - 6957005 - | hypothetical protein TERM 2660 6957829 - 6957860 + g 70 -12.2 -3.28712 | CCCAGCCGTGGTACA GCGTGATCCGTCCG TGGC CGTCCGGATCGCGC TTCTCGGCCAGCCAC MSMEG_6916 6958400 - 6959065 + | short chain dehydrogenase leuS 6961933 - 6959072 - | leucyl-tRNA synthetase MSMEG_6919 6962147 - 6963091 + | proline-rich 28 kDa antigen MSMEG_6920 6963161 - 6963529 + | hypothetical protein MSMEG_6921 6964135 - 6963530 - | hypothetical protein TERM 2661 6964732 - 6964756 + G 81 -12.7 -3.85698 | GATGAATTCGGTGGC CACCGCGACCG GGG CGGCCGCGGCG TTTCTCGGCGCCAAC MSMEG_6922 6964262 - 6965557 + | transporter, major facilitator family protein MSMEG_6923 6965572 - 6966345 + | hypothetical protein MSMEG_6925 6966936 - 6966439 - | hypothetical protein MSMEG_6926 6968397 - 6966955 - | tRNA adenylyltransferase TERM 2662 6968340 - 6968305 - G 78 -16.1 -3.05384 | overlap 6968307 GCCTGCGGCAGCGAA CACCGCGCCGAGCTC GCGCAG GACCCCGGCGCGGCG GTTCAACGCAACCAG TERM 2663 6968338 - 6968307 - G 74 -15.1 -3.08679 | overlap 6968305 CTGCGGCAGCGAACA CCGCGCCGAGCTC GCGCAG GACCCCGGCGCGG CGGTTCAACGCAACC TERM 2664 6968534 - 6968506 - g 74 -12.3 -3.66803 | overlap 6968509 GGCGAACAGGCCAAA CCACGACGACGCC GAG GCCGGCGCCGTGG TCATCGCCGTGCGCA TERM 2665 6968704 - 6968689 - g 72 -6 -4.32177 | overlap 6968674 6968690 6968691 CCAGGTGAGAAGAAA CCCGGC CCAG GCCGTG GCTCGCGTGCCGGCG MSMEG_6927 6968482 - 6969375 + | MutT/nudix family protein TERM 2666 6971524 - 6971555 + G 70 -13 -3.36327 | gap 1, overlap 6971525 TCACCCTGCAGACCG TC-GACGGGCTCCCC CTC GGCGAGCCCGTCCGG TTGTCGGTGCACTCC MSMEG_6928 6969396 - 6971798 + | hypothetical protein MSMEG_6929 6971795 - 6975445 + | integral membrane protein MviN, putative TERM 2667 6975729 - 6975695 - gTf 78 -14.2 -3.21747 | opp_overlap 6975716 CTACCTGACCAGCAA CCACCTCGACGACGCC GAC GACGCCGTCCAGGAGG CGTTGCTCAAGGCGC MSMEG_6930 6976977 - 6976060 - | hypothetical protein MSMEG_6931 6975546 - 6976172 + | RNA polymerase sigma-70 factor MSMEG_6932 6976123 - 6976860 + | hypothetical protein trxB 6976965 - 6977900 + | thioredoxin-disulfide reductase trx 6977934 - 6978266 + | thioredoxin MSMEG_6935 6978405 - 6979595 + | N-acetylmuramoyl-L-alanine amidase MSMEG_6936 6980393 - 6979641 - | hypothetical protein TERM 2668 6980607 - 6980629 + r 70 -4.9 -4.37527 | gap 1 AAACGAGCGCGTGTG GTTGGTCGTC CGCT GAC-ACCGAC TTTTACTCGTTCTGG MSMEG_6938 6981687 - 6980632 - | ParB-like partition proteins TERM 2669 6981534 - 6981584 + g 82 -11.2 -4.11216 | gap 1 TACCCGCAGGCGGAG TCGGTGCCGACGGTGCCCCAC CCATGAGGAC GTCGGCCGCCGT-GGCACCGA TTTTCGGGCTCAACC MSMEG_6939 6982718 - 6981747 - | Soj family protein gidB 6983428 - 6982721 - | methyltransferase GidB MSMEG_6941 6984043 - 6983492 - | R3H domain-containing protein MSMEG_6942 6985182 - 6984079 - | putative inner membrane protein translocase component YidC MSMEG_6944 6985522 - 6985175 - | hypothetical protein rnpA 6985890 - 6985519 - | ribonuclease P protein component rpmH 6986086 - 6985943 - | 50S ribosomal protein L34 dnaA 6986600 - 6988114 + | chromosomal replication initiation protein