TransTermHP v2.07 (built on Jan 21 2009) 25 bins; sample size is 20000000 --pval-conf=/fs/szasmg2/carlk/TTupdate2/expterm.dat --gc=-2.3 --au=-0.9 --gu=1.3 --mm=3.5 --gap=6 --max-len=59 --min-stem=4 --max-loop=13 --min-loop=3 --uwin-length=6 --uwin-require=3 --max-hp-score=-2 --max-tail-score=-2.5 --loop-penalty=1,2,3,4,5,6,7,8,9,10,11 --start-cut=0 --end-cut=25 Genes: 0.340099 %AT, 3913422 nt, 35427 terms. Intergenic: 0.373364 %AT, H2T: 358034 nt, 2525 terms; T2T: 150550 nt, 2010 terms; H2H: 170312 nt, 2409 terms. Each terminator entry starts in column 3 and is of the form: term # start - end +/- regionconf hp tail | notes Followed by the sequence of the 5' tail, 5' stem, loop, 3' stem, and 3' tail. Genes are interspersed, and start the first column. SEQUENCE gi|57116681|ref|NC_000962.2| Mycobacterium tuberculosis H37Rv, complete genome (length 4411532) dnaA 1 - 1524 + | chromosomal replication initiation protein dnaN 2052 - 3260 + | DNA polymerase III subunit beta recF 3280 - 4437 + | recombination protein F Rv0004 4434 - 4997 + | hypothetical protein TERM 1 5162 - 5134 - g 71 -3.1 -4.61231 | gap 1, overlap 5137 5138 5145 TTAGATGGGTAAAAA CGAG-GCCAGAA GATCGG CCCTGGCGCCCG ATCACGGTACAGTGG gyrB 5123 - 7267 + | DNA gyrase subunit B gyrA 7302 - 9818 + | DNA gyrase subunit A TERM 2 10383 - 10407 + G 72 -13.5 -3.17723 | GATCGAGAGGGGATT CGGCCGCCGGT TCG AGCGGCGGTCG TTCGATTACCGCTGA Rv0007 9914 - 10828 + | hypothetical protein Rv0008c 12311 - 11874 - | hypothetical protein TERM 3 12386 - 12427 + H 76 -8.5 -4.1891 | gap 1, overlap 12389 CACAGACTGCCATCA CTGGCCCGTCGGCGGGCTCG TTG CGGGTGCGCCG-CGTGCGGG TTTGTGTTCCGGGCA ppiA 12468 - 13016 + | iron-regulated peptidyl-prolyl cis-trans isomerase A Rv0010c 13558 - 13133 - | hypothetical protein TERM 4 13239 - 13222 - G 77 -7.7 -4.38712 | CCCAGCGGGACAAAA TCAGCAG CCCC CCGCTGA CCGTTTCGATCTCGA Rv0011c 13995 - 13714 - | putative septation inhibitor protein TERM 5 13917 - 13966 + g 70 -8.6 -3.9461 | gap 1, overlap 13927 13937 ATACGCTCGACGGTC CGACCTTCACCTTCATCGGCGTG CGGCT CACCGCGCTGACGGTGAAG-TCG TTCTTCTTGCGGACC Rv0012 14089 - 14877 + | hypothetical protein trpG 14914 - 15612 + | para-aminobenzoate synthase component II pknB 17470 - 15590 - | transmembrane serine/threonine-protein kinase B PKNB (protein kinase B) (STPK B) TERM 6 15639 - 15650 + g 72 -7.2 -4.25104 | overlap 15630 15647 CGGTTGACGCCGGTC CCCG CCGG CGGG TTTTGATAGACGACC TERM 7 16672 - 16688 + g 76 -8.7 -4.20883 | overlap 16657 CGGCGCGCATCTCCG CCGCTGT CTG ATAGCGG TTTTCCGGATTTTTG pknA 18762 - 17467 - | transmembrane serine/threonine-protein kinase A PKNA (protein kinase A) (STPK A) pbpA 20234 - 18759 - | penicillin-binding protein PbpA rodA 21640 - 20231 - | cell division protein RodA TERM 8 20259 - 20276 + g 70 -8.3 -4.00042 | ATGACCTCGGTGCCG GCCGCCG TAAT CGGCGAC TTATTTCGTGGGCGG ppp 23181 - 21637 - | serine/threonine phosphatase TERM 9 23194 - 23237 + r 93 -17.5 -3.51365 | CACTCTCCCCCGCAA GCGGGTGGGGGTAC-CCCCCA CTTG TGGGGGCGCGCCCCCA-CCGC TTCTCTGCGCTCTGC Rv0019c 23737 - 23270 - | hypothetical protein TB39.8 25444 - 23861 - | hypothetical protein Rv0021c 26881 - 25913 - | hypothetical protein whiB5 27442 - 27023 - | transcriptional regulatory protein WHIB-like WHIB5 Rv0023 27595 - 28365 + | transcriptional regulatory protein Rv0024 28362 - 29207 + | putative secreted protein P60-related protein TERM 10 29574 - 29558 - g 78 -6.5 -4.58395 | opp_overlap 29549, overlap 29571 TCGATCGCGCAAAAA GCGCTGT GCT AAAGCGC CTGCGGGCACAGTAC Rv0025 29245 - 29607 + | hypothetical protein Rv0026 29722 - 31068 + | hypothetical protein Rv0027 31189 - 31506 + | hypothetical protein Rv0028 31514 - 31819 + | hypothetical protein Rv0029 32057 - 33154 + | hypothetical protein Rv0030 33224 - 33553 + | hypothetical protein Rv0031 33582 - 33794 + | remnant of A transposase TERM 11 35696 - 35709 + G 81 -3.8 -5.00616 | CACGTCTCGCTTGAG CAGG AACTAG CCTG TTTTTTGGGCAAACC bioF2 34295 - 36610 + | 8-amino-7-oxononanoate synthase BioF2 acpA 36607 - 36870 + | acyl carrier protein AcpA Rv0034 36867 - 37262 + | hypothetical protein TERM 12 38496 - 38508 + G 79 -4.8 -4.77165 | AAGGCTTCTGCGACA CCCA CGACT TGGG TTTTCTTGTAGACGA fadD34 37259 - 38947 + | fatty-acid-CoA ligase Rv0036c 39829 - 39056 - | hypothetical protein Rv0037c 41202 - 39877 - | integral membrane protein TERM 13 40055 - 40039 - G 70 -6.5 -4.24948 | overlap 40041 GTATGAGACCCAAAA CAGTGCA TCC TGCACGG CGAACACGTGCCCGC Rv0038 41304 - 41912 + | hypothetical protein Rv0039c 42351 - 42004 - | transmembrane protein mtc28 43365 - 42433 - | secreted proline rich protein MTC28 (proline rich 28 kDa antigen) TERM 14 45233 - 45248 + G 71 -3.2 -4.63218 | GAGCTGCCTGATGTC CCGG ACTACTCG CCGG TTTTGTTCGACCCCG leuS 43562 - 46471 + | leucyl-tRNA synthetase Rv0042c 47207 - 46581 - | MarR family transcriptional regulator Rv0043c 48100 - 47366 - | GntR family transcriptional regulator Rv0044c 49027 - 48233 - | oxidoreductase Rv0045c 49939 - 49043 - | hydrolase ino1 51124 - 50021 - | myo-inositol-1-phosphate synthase INO1 (inositol 1-phosphate synthetase) (D-glucose 6-phosphate cycloaldolase) (glucose 6-phosphate cyclase) (glucocycloaldolase) Rv0047c 51727 - 51185 - | hypothetical protein TERM 15 51530 - 51563 + g 73 -13.1 -3.30124 | gap 1, opp_overlap 51524 51523 TTGGTAAACGCGTCG TGCTCGCCGCACCGGG GTG CCCGCTGGGGCG-GCA TTCTCGGCGATCAAC Rv0048c 52697 - 51828 - | hypothetical protein TERM 16 52277 - 52317 + g 70 -10.4 -3.73224 | gap 2 CGAGGGAATGCAGCT GCCTGGGCGGGGTCAGCACC ACG GGGGC-GATCCCGTC-GGGC TTTGCTCCGGGATCC TERM 17 52446 - 52468 + g 71 -9 -3.87815 | opp_overlap 52428, overlap 52434 52435 52447 CAACTCGGTGCGTTT CGCCCGCGAT TTG AGCGCGGGCA TTTGTGCGGGTGCGC TERM 18 52630 - 52610 - G 71 -12.5 -3.28712 | opp_overlap 52607 52605 52613, overlap 52611 GGGCGTCGTCGAGAA TCCGGCAGG CGT CCTGCCGGT CGCTGTCTTTGGCGC TERM 19 52629 - 52611 - G 74 -16 -2.57132 | opp_overlap 52607 52605 52613, overlap 52610 GGCGTCGTCGAGAAT CCGGCAGG CGT CCTGCCGG TCGCTGTCTTTGGCG Rv0049 52831 - 53244 + | hypothetical protein TERM 20 53865 - 53883 + G 76 -8.8 -4.20368 | TGCGCCAGGCGGTGA TTGCGGCC GAA GACCGCAA TTTCTATTCGAATCC ponA1 53663 - 55699 + | bifunctional penicillin-binding protein 1A/1B TERM 21 56258 - 56294 + G 70 -11 -3.57462 | gap 1 CCCTCCCGGTGGTTG CCGAA-GTGGTGATGTT CTTC AACGTCGCCGCGTTCGG TTTGGCGCTGGCGTG Rv0051 55696 - 57378 + | transmembrane protein Rv0052 57410 - 57973 + | hypothetical protein rpsF 58192 - 58482 + | 30S ribosomal protein S6 ssb 58586 - 59080 + | single-strand DNA-binding protein rpsR 59122 - 59376 + | 30S ribosomal protein S18 TERM 22 59602 - 59581 - g 70 -3.6 -4.54727 | overlap 59582 CCCGCGAAACCAAAA GCGTACGC GACCTA GAGCACGC CAACGAGATCAAGGC rplI 59409 - 59867 + | 50S ribosomal protein L9 Rv0057 59896 - 60417 + | hypothetical protein TERM 23 60786 - 60773 - g 75 -9.5 -4.07885 | CATCGTTGCCGAAAA GGCGC TGCT GCGCC GGCTGGTAGAGGCCG dnaB 60396 - 63020 + | replicative DNA helicase Rv0059 63200 - 63892 + | hypothetical protein Rv0060 63909 - 64967 + | hypothetical protein Rv0061 64991 - 65416 + | hypothetical protein TERM 24 65507 - 65467 - f 73 -11.1 -3.61774 | GAGAACAGCCTGAAA TCCTGTTCGGTTGATGCCG TGC CGGCATCGACGTACCAGGA CGAGGCACTGACTCG TERM 25 65991 - 66023 + G 71 -12.5 -3.32819 | CGGTTGCCAGGTACA CCGGAGCGGCGCAGG CGG CCGGCGCCATGCCGG TTCTGACGCTGTATG celA1 65552 - 66694 + | endo-1,4-beta-glucanase TERM 26 67447 - 67490 + G 71 -14.4 -2.88579 | TGTCGCGGGACACGC GCTGGGCGGCGGGCTGGG CGCCAATT CCCGGCACGCCGGCCTGC TCTGTGACCAATTGA Rv0063 66923 - 68362 + | oxidoreductase TERM 27 69414 - 69453 + G 73 -3.5 -4.58283 | GCTTGTGCTGGTGGC GATTGCGGTATTGTGTG CGGTGT CATTCTTTACCGCGATC TTTTTGCGCGACTTG Rv0064 68620 - 71559 + | hypothetical protein Rv0065 71821 - 72222 + | hypothetical protein icd2 74511 - 72274 - | isocitrate dehydrogenase TERM 28 72408 - 72421 + g 74 -2.3 -4.72272 | CGGTGAGCTCTCGCA CGATG ACGT CTTCG TTTTTGGTCAACACA Rv0067c 75198 - 74629 - | TetR family transcriptional regulator TERM 29 75273 - 75225 - H 100 -20.2 -3.88583 | opp_overlap 75225 75226, overlap 75214 GAAAGCCTTGACAAA GCGGGGCGCGCGTTCCGTATAG TTCGG CTAAGCGGAGCGCTCGCCCCGC TTAGTCAAAGCATAG TERM 30 75225 - 75273 + H 100 -25.3 -3.14564 | opp_overlap 75214 75225, overlap 75226 GAAAGCCTTGACAAA GCGGGGCGCGCGTTCCGTATAGT TCG GCTAAGCGGAGCGCTCGCCCCGC TTAGTCAAAGCATAG Rv0068 75301 - 76212 + | short chain dehydrogenase sdaA 77622 - 76237 - | L-serine dehydratase SdaA TERM 31 77211 - 77195 - G 81 -8.7 -4.44608 | CCCACCGAAAAATAA GTCTCGG TGG CCAAGAC GCGGCCGTGTGGGCC glyA2 78896 - 77619 - | serine hydroxymethyltransferase TERM 32 79166 - 79188 + H 74 -13.4 -2.88579 | overlap 79156 CTACACCTTCGGTCA GGCACGGTCG GTG CGACCGTCCC TGTCTCCAGAGTTGC Rv0071 79486 - 80193 + | maturase TERM 33 80671 - 80714 + G 74 -7.5 -4.17048 | gap 1, overlap 80671 GAGAAAGCGCCGCCT G-GTCATCACGATCATCAGC ACCGG GCTGATCTTCGGGATGACGC TTGTTTTGACCGGAC TERM 34 80799 - 80817 + G 76 -6.6 -4.47551 | overlap 80801 ATGTATTCGTCGTCA GATCCGGC GCT GCTGGACC TTTTCTGGGTTCAAT Rv0072 80624 - 81673 + | glutamine-transport transmembrane protein ABC transporter Rv0073 81676 - 82668 + | glutamine-transport ATP-binding protein ABC transporter Rv0074 82748 - 83983 + | hypothetical protein TERM 35 84348 - 84361 + G 77 -5.2 -4.60487 | overlap 84340 TCGCGTTGCCGGTTC CGGC TTACAT GCCG TTTTTCGACGTCCTG Rv0075 83996 - 85168 + | aminotransferase Rv0076c 85572 - 85183 - | hypothetical protein Rv0077c 86466 - 85636 - | oxidoreductase Rv0078 86528 - 87133 + | transcriptional regulatory protein Rv0078A 87801 - 87208 - | hypothetical protein Rv0079 88204 - 89025 + | hypothetical protein Rv0080 89022 - 89480 + | hypothetical protein Rv0081 89575 - 89919 + | transcriptional regulatory protein Rv0082 89924 - 90403 + | oxidoreductase TERM 36 91423 - 91458 + G 71 -3.1 -4.59773 | gap 1, overlap 91428 GACCTGGACCTGCTC GGCGG-GCTGGCCCGC CGAAT GCCGGCGACCACCGTC TTTTTCGGGGTGGCC Rv0083 90400 - 92322 + | oxidoreductase TERM 37 92534 - 92494 - g 80 -16.9 -2.78606 | gap 1, opp_overlap 92522, overlap 92489 92487 92496 GCAAGCAACAGATCA CACCGGCGGGGACGACGA TCGTGT TCGCCG-CCGCGCCGGTG ATCGTCGCCGGGACA TERM 38 92532 - 92496 - g 71 -13.7 -2.9329 | gap 1, opp_overlap 92522, overlap 92494 92489 92487 AAGCAACAGATCACA CCGGCGGGGACGACGA TCGTGT TCGCCG-CCGCGCCGG TGATCGTCGCCGGGA hycD 92328 - 93278 + | formate hydrogenlyase HYCD hycP 93289 - 93951 + | hydrogenase HycP hycQ 93951 - 95417 + | hydrogenase HycQ TERM 39 95883 - 95896 + G 74 -5.2 -4.52589 | overlap 95868 CCGGCCTCATCGAAC CCGG TCACTT CCGG TTTTCTGTCGCGGGC hycE 95414 - 96892 + | formate hydrogenase HycE Rv0088 96927 - 97601 + | hypothetical protein Rv0089 97758 - 98351 + | methyltransferase/methylase Rv0090 98480 - 99250 + | hypothetical protein mtn 99684 - 100451 + | bifunctional 5'-methylthioadenosine nucleosidase/S-adenosylhomocysteine nucleosidase Rv0093c 103663 - 102815 - | hypothetical protein ctpA 100583 - 102868 + | cation transporter P-type ATPase A TERM 40 103021 - 102997 - GT 70 -6.4 -4.22652 | gap 1 GCAGATGAGTCAAAA TCC-GCGTGGT GCTG ACCGCGCCGGA CAGCGCATCCACAAT Rv0094c 104663 - 103710 - | hypothetical protein TERM 41 103841 - 103853 + g 71 -3.3 -4.57569 | CGTGGGTGTTGTTGT GGGTG GTC CAGCC TTTTTCGGCGAGTCG TERM 42 104167 - 104197 + g 74 -12.5 -3.57792 | ATGGGTAGCAGGGTG CCGCCGCCGGTGA AGCCC TTGCCGGCGCCGG TTTGCAGGTCGGTCA Rv0095c 105215 - 104805 - | hypothetical protein PPE1 105324 - 106715 + | PPE family protein Rv0097 106734 - 107603 + | oxidoreductase Rv0098 107600 - 108151 + | hypothetical protein fadD10 108156 - 109778 + | acyl-CoA synthetase Rv0100 109783 - 110019 + | hypothetical protein TERM 43 114740 - 114694 - g 83 -12.1 -4.09685 | opp_overlap 114733 TGGCAGTGCTCAAAA CCGGGGCGGCGTATCTGCCGA TCGAT CCGGCGAATCCTCCGCCGCGG GTGGCGTTCATGCTC nrp 110001 - 117539 + | peptide synthetase Rv0102 117714 - 119699 + | integral membrane protein ctpB 122173 - 119915 - | cation-transporter P-type ATPase B TERM 44 119979 - 119966 - G 79 -4.5 -4.79223 | overlap 119975 119976 TGACACGACGAAAAA TGACG AGAA CGCCA TGGCGGCACCGGCGA Rv0104 122317 - 123831 + | hypothetical protein rpmB 124264 - 123980 - | 50S ribosomal protein L28 Rv0106 124374 - 125570 + | hypothetical protein ctpI 130541 - 125643 - | cation-transporter ATPase I TERM 45 128615 - 128580 - G 80 -14 -3.72027 | overlap 128583 ACCGGTGACCAACAA CAGCCCGGCCAAGGTG GTGC CACCTTGGGCGAGGTG TACCGCGGATTCACT TERM 46 128966 - 128936 - G 78 -10.2 -4.10657 | opp_overlap 128938, overlap 128939 CGACATGGCGCAAAA CCACCCGCGCTCCG GTT CGGTGCGCGGTCTG CAGCAGCGGGATTGC Rv0108c 131104 - 130895 - | hypothetical protein PE_PGRS1 131382 - 132872 + | PE-PGRS family protein TERM 47 133672 - 133686 + G 70 -4.2 -4.45664 | overlap 133674 ACTTGATCCAGGCCA CAGTGA CGA TCACCG TTTTGGTTGCGTTCG Rv0110 133020 - 133769 + | integral membrane protein Rv0111 133950 - 136007 + | transmembrane acyltransferase gca 136289 - 137245 + | GDP-mannose 4,6-dehydratase TERM 48 137649 - 137667 + G 78 -5.9 -4.62783 | GCCCTCGAAGGATCT GCGCGTC CCGGC GACACGC TTTTTGCGATAAGTA gmhA 137319 - 137909 + | sedoheptulose-7-phosphate isomerase gmhB 137941 - 138513 + | D-alpha,beta-D-heptose-1,7-biphosphate phosphatase hddA 138513 - 139673 + | D-alpha-D-heptose-7-phosphate kinase TERM 49 139973 - 139955 - T 71 -8.2 -3.84406 | opp_overlap 139955 139954 139957, overlap 139960 CCTGCAGGAGAAGAA CATGACCA CGA TGATCATG ACTTTTGTTGTTCCA Rv0116c 141022 - 140267 - | hypothetical protein TERM 50 141504 - 141532 + G 72 -7.3 -4.25104 | opp_overlap 141510 CGGTTCCCACCGCGT CAACGACGGCATC CCT GGTGCTGTCGGCG TTTTGCTCGGCGCAC oxyS 141200 - 142144 + | oxidative stress response regulatory protein OXYS oxcA 143876 - 142128 - | putative oxalyl-CoA decarboxylase TERM 51 145453 - 145489 + G 80 -15.1 -3.38291 | GTCGCGGCGGTGATT GTGCCTCGTGAGTCCGC CCC GCCGACTCGCGAGGAGC TTGTCCAGTTCTGCC fadD7 144049 - 145626 + | acyl-CoA synthetase fusA2 147771 - 145627 - | elongation factor G TERM 52 146748 - 146717 - G 75 -9.4 -4.06719 | gap 1, opp_overlap 146715, overlap 146718 AAAAACGATGAGAAA TGGCCCGACAC-ATG GAC CGTCGTGTCGGGCCT GATGGTTCCGGAGAA TERM 53 146747 - 146718 - G 70 -12.9 -3.02405 | gap 1, opp_overlap 146715, overlap 146717 AAAACGATGAGAAAT GGCCCGACAC-ATG GAC CGTCGTGTCGGGCC TGATGGTTCCGGAGA Rv0121c 148342 - 147908 - | hypothetical protein TERM 54 148146 - 148164 + g 91 -12.4 -4.19506 | TCGAGATTGGCGAGC CGGCGCAG CCG CTGCGTCG TTTTCCGCTTCGCGT TERM 55 148573 - 148597 + G 70 -10.8 -3.55444 | gap 1, opp_overlap 148565 GAGACCAGTGCTATC GCGTCGAACGG ACGA CCGTT-GACGC TTTGACACATCCCGA Rv0122 148491 - 148859 + | hypothetical protein Rv0123 148856 - 149224 + | hypothetical protein TERM 56 149640 - 149694 + G 85 -14.1 -4.07687 | overlap 149643 CGCGGCTGCGCCGAC CACCGCCGTGCTGGCCGCGGGTGCC GATGA GGTGTCGGCGGCGATCGCGGCGCTG TTTTCCGGCCACGCT PE_PGRS2 149533 - 150996 + | PE-PGRS family protein TERM 57 151094 - 151081 - f 74 -2.3 -4.82901 | GTTGGTGTAGAAAAA TCCTG CCGC CCGGA CCCTTAAGGCTGGGA pepA 151148 - 152215 + | serine protease PepA TERM 58 153281 - 153291 + G 76 -8.2 -4.16943 | TTCATGGCCGTGCGC CGGG AGT CCCG TTTTCCGATCTCGGA treS 152324 - 154129 + | trehalose synthase TRES Rv0127 154232 - 155599 + | hypothetical protein TERM 59 155605 - 155619 + F 71 -9.2 -3.8186 | CGCTAGCTGATACCG GCCGGG GTG TCCGGC TTATTGCTTGGCGTG Rv0128 155667 - 156446 + | transmembrane protein TERM 60 156521 - 156569 + T 83 -15.4 -3.18264 | gap 1, opp_overlap 156529, overlap 156526 ACCCAGTGCGGATGT TCCACACATCGGCAGCAGCGC TGGCCGTT GCGCTGCTGCCGATGC-TGGC TTGCTGGCTCAGGCG TERM 61 156526 - 156565 + T 87 -19.4 -2.57244 | opp_overlap 156529, overlap 156521 GTGCGGATGTTCCAC ACATCGGCAGCAGCGC TGGCCGTT GCGCTGCTGCCGATGC TGGCTTGCTGGCTCA TERM 62 156562 - 156529 - T 93 -19.7 -2.87931 | opp_overlap 156526 156521 CGGATGTTCCACACA TCGGCAGCAGCGC TGGCCGTT GCGCTGCTGCCGA TGCTGGCTTGCTGGC fbpC 157600 - 156578 - | secreted antigen 85-C FBPC (85C) (antigen 85 complex C) (AG58C) (Mycolyl transferase 85C) (fibronectin-binding protein C) Rv0130 157847 - 158302 + | hypothetical protein fadE1 159658 - 158315 - | acyl-CoA dehydrogenase FADE1 TERM 63 158605 - 158630 + g 73 -5.9 -4.32034 | overlap 158606 GGGGCATCGCCACCT TGACCGCCGCG ATGT CGCGGCGCACC TTTTGATAGTCGTGG TERM 64 159482 - 159503 + g 77 -2.9 -4.91109 | overlap 159475 159485 CTGCAGCGGCCGCAG GATCGCC ATCGTGTC GGCGTTC TTTTTGTCGTAAGGA fgd2 160782 - 159700 - | putative f420-dependent glucose-6-phosphate dehydrogenase Fgd2 Rv0133 160869 - 161474 + | acetyltransferase TERM 65 162103 - 162151 + G 71 -3.1 -4.59773 | gap 1, overlap 162079 162089 162104 CCACGATTGGGGTGG GCCGGTCGCGTTCATCATGATG TTGCGC CATCCCGA-GAAGGTGACCGGG TTTTTCGGCGTGAAC ephF 161771 - 162673 + | epoxide hydrolase EphF Rv0135c 163249 - 162644 - | transcriptional regulatory protein TERM 66 163682 - 163706 + G 100 -20.7 -3.53012 | GCGACGACCACCGGC GGCGGCGCCGG CTA CTGGCGCCGCC TTTCCACGGCAAGAG cyp138 163366 - 164691 + | cytochrome P450 138 msrA 165260 - 164712 - | methionine sulfoxide reductase A Rv0138 165323 - 165826 + | hypothetical protein Rv0139 165827 - 166849 + | oxidoreductase Rv0140 166910 - 167290 + | hypothetical protein Rv0141c 167681 - 167271 - | hypothetical protein Rv0142 167711 - 168637 + | hypothetical protein Rv0143c 170182 - 168704 - | transmembrane protein Rv0144 170284 - 171126 + | TetR family transcriptional regulator Rv0145 171215 - 172168 + | hypothetical protein Rv0146 172211 - 173143 + | hypothetical protein TERM 67 174295 - 174265 - g 70 -6.6 -4.18018 | overlap 174266 TCGCCGCAGCGAAAA CCGACGCTGCAGCC GAC GGCGGCGGGGTCGT CGTGGGCGGCGACTG Rv0147 173238 - 174758 + | aldehyde dehydrogenase Rv0148 174833 - 175693 + | short-chain type dehydrogenase/reductase Rv0149 175700 - 176668 + | quinone oxidoreductase Rv0150c 176952 - 176665 - | hypothetical protein PE1 179309 - 177543 - | PE family protein PE2 180896 - 179319 - | PE family protein ptbB 181985 - 181155 - | phosphotyrosine protein phosphatase PTPB (protein-tyrosine-phosphatase) (PTPase) fadE2 183198 - 181987 - | acyl-CoA dehydrogenase FADE2 TERM 68 184397 - 184425 + G 86 -18.1 -3.14211 | TGGTGATCACCACCG CGCTGGTGCCGGG CCG CCCGGCGCCAACG TTGGTGACCGCCGCT pntAa 183622 - 184722 + | NAD(P) transhydrogenase subunit alpha pntAb 184723 - 185055 + | NAD(P) transhydrogenase subunit alpha TERM 69 186460 - 186441 - g 74 -7.8 -4.1822 | GGTGATGCGAAGAAA TCGGTGAC CGAA GTCTCCGA GGAACTCAAGGCGTT pntB 185052 - 186479 + | NAD(P) transhydrogenase subunit beta TERM 70 186512 - 186535 + F 93 -17.4 -3.53224 | AGACGGGCGGATACG CCGGCGGCGG GTAT CCGTCGCCGG TTTCGACCCCGCGTA Rv0158 186785 - 187429 + | TetR family transcriptional regulator PE3 188839 - 187433 - | PE family protein TERM 71 187628 - 187661 + g 80 -15.9 -3.33696 | GGGGCCTTGCACGGT CCCGGTCGCCAGGGC CGAG GCCACGGCGATCGGG TTGATTGGCGCGAAC TERM 72 188886 - 188902 + r 95 -15.1 -4.08945 | AGCCTAGAGCGCGCC CGCCGGG AAG CCCGGCG TTTTCGGCCAATCGT PE4 190439 - 188931 - | PE family protein Rv0161 190607 - 191956 + | oxidoreductase adhE1 193135 - 191984 - | zinc-type alcohol dehydrogenase E subunit Rv0163 193117 - 193572 + | hypothetical protein TB18.5 193626 - 194111 + | hypothetical protein Rv0165c 194938 - 194144 - | GntR family transcriptional regulator fadD5 194993 - 196657 + | acyl-CoA synthetase yrbE1A 196861 - 197658 + | integral membrane protein YRBE1A yrbE1B 197660 - 198529 + | integral membrane protein YRBE1B TERM 73 199722 - 199738 + G 76 -15.1 -3.14211 | overlap 199733 199736 AACGCTCGCGGTGGC CCGGGGG GCG CCCCCGG TTGCTGGCAGCCGAT mce1A 198534 - 199898 + | MCE-family protein MCE1A TERM 74 199953 - 199973 + G 85 -10.5 -4.1899 | TGGTGCTGCTGTTCT TCACGGTGA TGA TCATCGTGA TTTTCGGTCAGATGC mce1B 199895 - 200935 + | MCE-family protein MCE1B mce1C 200932 - 202479 + | MCE-family protein MCE1C mce1D 202476 - 204068 + | MCE-family protein MCE1D lprK 204065 - 205237 + | MCE-family lipoprotein LprK mce1F 205231 - 206778 + | MCE-family protein MCE1F Rv0175 206814 - 207455 + | mce associated membrane protein TERM 75 208360 - 208349 - g 70 -2.2 -4.58395 | overlap 208326 208351 GCGATCTTCCAAAAA TCGC GCGG GCAA TGGCGCCTCGACGAT Rv0176 207452 - 208420 + | mce associated transmembrane protein Rv0177 208417 - 208971 + | MCE associated protein Rv0178 208938 - 209672 + | mce associated membrane protein lprO 210812 - 209703 - | lipoprotein LprO TERM 76 210289 - 210324 + g 72 -5.8 -4.36914 | ACGTAGGCGCCCAGC GGTGAGCTGCAGCCGG TCGA CCGCCAGCTGCCCCCC TTTTGTCCGCGAACG Rv0180c 212250 - 210892 - | transmembrane protein Rv0181c 213011 - 212277 - | hypothetical protein sigG 214140 - 213028 - | RNA polymerase factor sigma-70 Rv0183 214088 - 214927 + | lysophospholipase TERM 77 215711 - 215679 - g 75 -11.8 -3.62775 | overlap 215665 ACGACTCGGGAACAA CCCCGAGCTGCCCG GGGCA CGGGCCGCGCTGGG CCGGTGATCGGCGCG Rv0184 214969 - 215718 + | hypothetical protein Rv0185 215715 - 216224 + | hypothetical protein bglS 216269 - 218344 + | beta-glucosidase Rv0187 218705 - 219367 + | O-methyltransferase Rv0188 219486 - 219917 + | transmembrane protein ilvD 221723 - 219996 - | dihydroxy-acid dehydratase Rv0190 221871 - 222161 + | hypothetical protein Rv0191 222289 - 223530 + | integral membrane protein Rv0192A 223607 - 223909 + | hypothetical protein Rv0192 223564 - 224664 + | hypothetical protein Rv0193c 226571 - 224724 - | hypothetical protein TERM 78 226232 - 226200 - G 78 -6.1 -4.67904 | TACCAATTCCAAAAA GTCGTCCGACTCGAC GAT GTCGGCAAGGACGAC TGCGCCCTGCTCGGC TERM 79 226954 - 226980 + G 88 -10 -4.42238 | TGTTGGGATTCGGGG CGGCGCTGGCCG GCA CCGTCATCGCCG TTTTGGTTCCGCTGG TERM 80 228990 - 229022 + G 72 -11.9 -3.53012 | TTGCGGTCCGTCGTC TTCGCCCATGCCCAG CGC CTGGGCCTGGACGCA TTTGAAGACGACGGA Rv0194 226878 - 230462 + | drugs-transport transmembrane ATP-binding protein ABC transporter Rv0195 230899 - 231534 + | two component transcriptional regulatory protein Rv0196 231647 - 232231 + | transcriptional regulatory protein TERM 81 232576 - 232593 + G 74 -9.8 -3.86015 | GGCAATCACCTCGGC GGCGCC TACAGC GGCGCC TTTCTGAAGGCACTG TERM 82 234359 - 234329 - g 100 -24.1 -2.78384 | opp_overlap 234317 TTGGGCTGGACTACA CCGGCGACGACGG GCGCA CCGTCGTCGCCGG TGTCGCCCCGAACGC TERM 83 234497 - 234456 - g 100 -24.7 -2.78596 | opp_overlap 234463, overlap 234426 234463 CATCCGCCGAGCAGA CGCAGAATCGCCCATTTGG TATC CCAAATGGGCGATTCTGCC TGCTCGCGGGGTCTT TERM 84 234490 - 234463 - g 93 -18.6 -3.40299 | opp_overlap 234463, overlap 234456 CGAGCAGACGCAGAA TCGCCCATTTGG TATC CCAAATGGGCGA TTCTGCCTGCTCGCG TERM 85 234463 - 234490 + G 93 -18.6 -3.37796 | opp_overlap 234463 234456 CGAGCAGACGCAGAA TCGCCCATTTGG TATC CCAAATGGGCGA TTCTGCCTGCTCGCG Rv0197 232231 - 234519 + | oxidoreductase Rv0198c 236507 - 234516 - | zinc metalloprotease Rv0199 236550 - 237209 + | hypothetical protein Rv0200 237206 - 237895 + | transmembrane protein Rv0201c 238395 - 237892 - | hypothetical protein mmpL11 241292 - 238392 - | transmembrane transport protein MmpL11 Rv0203 241514 - 241924 + | hypothetical protein TERM 86 241983 - 241999 + T 71 -11.5 -3.4072 | overlap 241972 GCGGTCGCCTACCGG GGCGGTG TCT CGCCGCC TTCTGGTCGCAGGTC Rv0204c 243214 - 241976 - | transmembrane protein TERM 87 244114 - 244130 + G 75 -4.3 -4.68424 | overlap 244077 244075 TGCCGCTGGCATTAC CGCTGGC CTC GCTGGTG TTTTTCGGTGCCTTC Rv0205 243384 - 244487 + | transmembrane protein mmpL3 247318 - 244484 - | transmembrane transport protein MmpL3 TERM 88 245187 - 245171 - G 74 -2.1 -4.7373 | overlap 245174 CGATGGCACTAAAAA CATCCGC ACC ACGGTCG CGTCCAGCAGCAGCG Rv0207c 248112 - 247384 - | hypothetical protein trmB 248906 - 248115 - | tRNA (guanine-N(7))-methyltransferase TERM 89 249324 - 249353 + G 72 -14.3 -3.01712 | gap 1, opp_overlap 249304 249324 AGGACCGCGAAGCCA TCGCCGCCACCCGG CGC CCG-GTGGTGGCGG TGTTGAACAAGGCCG Rv0209 249038 - 250123 + | hypothetical protein Rv0210 250120 - 251598 + | hypothetical protein TERM 90 253149 - 253185 + G 75 -4.4 -4.62069 | opp_overlap 253127 GGCCGAGGGCAAGGT CGGCAATGTGCGCCG-CG ACC CGATGGC-CATGCTGCCG TTTTTGGGCTACAAC pckA 251782 - 253602 + | phosphoenolpyruvate carboxykinase TERM 91 253620 - 253647 + T 86 -13.4 -3.89956 | gap 1, opp_overlap 253620 CGAGCAGACGCATAA GCCCCCG-CACGC ACG GCGTGTCGAGGGC TTTAGTGTCTGCTCG TERM 92 253647 - 253620 - T 85 -15.6 -3.40299 | gap 1, opp_overlap 253620 CGAGCAGACGCATAA GCCCCCG-CACGC ACG GCGTGTCGAGGGC TTTAGTGTCTGCTCG nadR 254640 - 253669 - | transcriptional regulatory protein NadR Rv0213c 255950 - 254637 - | methyltransferase (methylase) fadD4 256064 - 257677 + | acyl-CoA synthetase fadE3 258856 - 257783 - | acyl-CoA dehydrogenase FADE3 TERM 93 257824 - 257843 + g 70 -10.7 -3.56594 | overlap 257814 TCGAGTAGCCGTAGC CGCCGTG GATACG CACGGCG TTTAGGGCGATTTCC Rv0216 258913 - 259926 + | hypothetical protein lipW 260831 - 259923 - | esterase LipW Rv0218 260924 - 262252 + | transmembrane protein Rv0219 262254 - 262802 + | transmembrane protein lipC 262812 - 264023 + | esterase LipC Rv0221 264067 - 265476 + | hypothetical protein TERM 94 265534 - 265570 + G 72 -5.7 -4.30576 | opp_overlap 265533 265535 265540, overlap 265535 AGCGACGCAGCCAAC ACCGAACCTGAGGTTCT GGT AGAACAGCGGGATCGGA TTTTGATCATCACGA echA1 265507 - 266295 + | enoyl-CoA hydratase Rv0223c 267764 - 266301 - | aldehyde dehydrogenase Rv0224c 268627 - 267863 - | methyltransferase (methylase) Rv0225 268663 - 269817 + | hypothetical protein Rv0226c 271564 - 269834 - | transmembrane protein Rv0227c 272839 - 271574 - | hypothetical protein Rv0228 273055 - 274278 + | integral membrane acyltransferase Rv0229c 274986 - 274306 - | hypothetical protein TERM 95 274643 - 274679 + g 91 -12.2 -4.26076 | gap 1, opp_overlap 274642 CCGGCCTCAGCCAAC GGTTCCACC-GCCCGCC GCAC GGCGGGCCGGCTGAGCC TTTTGATCACGCTGG php 275963 - 274983 - | phosphotriesterase TERM 96 275013 - 275070 + g 74 -15 -3.05596 | overlap 274996 274996 275051 CTGCCGCTCGAAGAT GCGGCGCGG-GTTGTCGACGAGCATGGT GTGC AGC-TGCTCGTCGGTGACGCCGTGCTGC TTCAGTGCGGGGATG fadE4 276058 - 277764 + | acyl-CoA dehydrogenase FADE4 Rv0232 277899 - 278588 + | TetR/ACRR family transcriptional regulator nrdB 278585 - 279529 + | ribonucleotide-diphosphate reductase subunit beta TERM 97 279585 - 279544 - T 100 -24.1 -2.78384 | gap 1, opp_overlap 279544 279551 279583 279584, overlap 279551 GGCCTGGCGAGCAGA CGCAAAATCGCCCAATTTCG TGC CGAA-TTGGGCGATTTTGCG TCTGCTCGCCAGGGG TERM 98 279544 - 279585 + T 100 -24.1 -2.78384 | gap 1, opp_overlap 279544 279551, overlap 279551 279583 279584 GGCCTGGCGAGCAGA CGCAAAATCGCCCAATTTCG TGC CGAA-TTGGGCGATTTTGCG TCTGCTCGCCAGGGG TERM 99 279551 - 279578 + T 100 -13.6 -4.24948 | gap 1, opp_overlap 279551 279544, overlap 279544 CGAGCAGACGCAAAA TCGCCCAATTTCG TGC CGAA-TTGGGCGA TTTTGCGTCTGCTCG TERM 100 279578 - 279551 - T 100 -13.6 -4.24948 | gap 1, opp_overlap 279544 279551, overlap 279544 CGAGCAGACGCAAAA TCGCCCAATTTCG TGC CGAA-TTGGGCGA TTTTGCGTCTGCTCG gabD1 281140 - 279605 - | succinic semialdehyde dehydrogenase TERM 101 279752 - 279739 - G 74 -2.3 -4.82901 | TGCCGTTGATAAAAA CCTGG CCCG CCACG ATGTCGTCGATGAAG Rv0235c 282614 - 281166 - | transmembrane protein TERM 102 281761 - 281706 - G 76 -14.6 -3.17212 | gap 1, overlap 281748 CCAGTAGCTCAGCAA CAGCACCGCCGCGGTGAATACGACCAC GAG GCCGGCGAAC-CACTGCGGCGGTGCCG ACAGCGCCGGCTGGG TERM 103 281800 - 281748 - G 100 -21.1 -2.71144 | opp_overlap 281780, overlap 281706 GAGGCCGGCGAACCA CTGCGGCGGTGCCGACAGCGCCGGC TGG GCCGGCATCGGCAGCAGCGCCGCGG CCGAAGATGTGTCGA Rv0236c 286851 - 282649 - | transmembrane protein TERM 104 285154 - 285125 - G 70 -9.9 -3.72576 | CTGTCGTTGACGAAA CCCGCCAGCGGAT CAGG ACCCACCGGCGCG CCGAACTCCGCCAGC Rv0236A 287071 - 286898 - | hypothetical protein TERM 105 287164 - 287190 + H 73 -8.1 -4.07687 | ACCCGGAGCGTATGC GCCA-CCGTGACA GCA TGTC-CGGATGGC TTTTCCACGCACACT lpqI 287186 - 288352 + | lipoprotein LpqI Rv0238 288428 - 289042 + | TetR family transcriptional regulator Rv0239 289104 - 289337 + | hypothetical protein Rv0240 289345 - 289782 + | hypothetical protein Rv0241c 290654 - 289812 - | hypothetical protein fabG 292029 - 290665 - | 3-ketoacyl-(acyl-carrier-protein) reductase TERM 106 291982 - 291970 - G 74 -5.5 -4.56597 | TTGCCTGGCCAAAAA CGATC CTG GACCG GAGTTGACAACCTGC TERM 107 293429 - 293416 - g 81 -3.7 -5.01732 | opp_overlap 293420 293421 293423, overlap 293417 293418 AAGGCGGCGAAAAAA GGCGG CGGA CCGCT GCGCGGGCTGATTTC fadA2 292171 - 293493 + | acetyl-CoA acetyltransferase TERM 108 293670 - 293704 + T 100 -13.6 -4.66833 | opp_overlap 293670 293669 CAATCCCCTGGAAAG GGCCGCCGCTGG TGGGAGGGGAC CCAGCGGCGGTC TTTTTGGGCTTGCCC fadE5 295633 - 293798 - | acyl-CoA dehydrogenase FADE5 TERM 109 296241 - 296200 - g 78 -13.7 -3.56821 | gap 1 ACGACATGGCCGAAA CTCACCG-GCGTGCCGATGC TGG GCATCAGCGTGCTCGGCGAG GCCCATGACGCCGCA Rv0245 296005 - 296493 + | oxidoreductase TERM 110 297516 - 297535 + G 73 -12.2 -3.41569 | overlap 297506 297503 297515 TGGTTGGTATCGTCG GTACCTGC TTGT GCAGGTAC TCTTTGGCTCGGTCG Rv0246 296809 - 298119 + | integral membrane protein Rv0247c 298862 - 298116 - | fumarate reductase iron-sulfur subunit TERM 111 298508 - 298532 + g 81 -5.6 -4.81083 | GTAGCTCCTTGGGTG GCGCGAAAGA CGGGA TCTCGCGCGC TTTTTGGTAGTTGAA sdhA 300803 - 298863 - | succinate dehydrogenase flavoprotein subunit Rv0249c 301655 - 300834 - | succinate dehydrogenase membrane anchor subunit Rv0250c 302028 - 301735 - | hypothetical protein hsp 302652 - 302173 - | heat shock protein hsp (heat-stress-induced ribosome-binding protein A) TERM 112 302787 - 302831 + H 75 -4.4 -4.72386 | gap 1, opp_overlap 302770, overlap 302783 302806 CTGTCACACAGCCGG TCGCCAGGTGTGAT-CACA GCGTCATA TGTGCGTCACATTCGGCGA TTTTTCGGTAATTTG TERM 113 304354 - 304390 + G 71 -2.9 -4.63527 | gap 1 GTGGAGCAGTCCAAG GCGCTGTGCGAGCACT TCAGCC AGT-CGCGCGCGGAGC TTTTTGAAATCATCA nirB 302866 - 305427 + | nitrite reductase large subunit nirD 305453 - 305809 + | nitrite reductase [NAD(P)H] small subunit NirD cobU 306349 - 305825 - | bifunctional cobinamide kinase/cobinamide phosphate guanylyltransferase TERM 114 306160 - 306144 - G 71 -9.3 -3.85698 | opp_overlap 306143 306142 CGTGCCTCGGACAAA GCCGTCG CGA CGTCGGC CGTTTCCACCGTTAG cobQ1 307858 - 306374 - | cobyric acid synthase PPE2 309547 - 307877 - | PPE family protein TERM 115 308166 - 308201 + g 73 -9.6 -3.90744 | gap 1, overlap 308168 308182 TCGGGCGCCGCCGCG GCCGCTGGGGCCTCGGC GCT GTCG-GGTTCCGGCGTC TTCTTTCGAACGCCG TERM 116 308168 - 308199 + g 70 -10.8 -3.54488 | gap 1, overlap 308166 308182 GGGCGCCGCCGCGGC CGCTGGGGCCTCGGC GCT GTCG-GGTTCCGGCG TCTTCTTTCGAACGC TERM 117 309033 - 309073 + g 76 -14.8 -3.18383 | ATCTGGGGGGCTGGG GTGGTCTGCGG-TGCGGCGG CCA CCGCCGCGGTCG-AGACCGC TTGATAGCTGGCCAT TERM 118 309492 - 309466 - G 74 -15.8 -2.62184 | opp_overlap 309469 CCTCGGCCGACACCA GCAGCGGACCGG GCC CAGGCCCGCTGC TTAGCAGCGCCGAGT TERM 119 309982 - 309996 + G 71 -2.7 -4.64334 | overlap 309983 AGCTCTCAGCGACAG GCGCC TGGCC GGCGG TTTTGTTCCCAAGTT Rv0257 309699 - 310073 + | hypothetical protein Rv0258c 310749 - 310294 - | hypothetical protein Rv0259c 311517 - 310774 - | hypothetical protein Rv0260c 312659 - 311514 - | bifunctional uroporphyrinogen-III synthetase/response regulator domain-containing protein narK3 314168 - 312759 - | integral membrane nitrite extrusion protein NarK3 TERM 120 312862 - 312839 - G 72 -8.8 -4.0641 | CCCGACGCACATAAA TCGCCCAGGT CAGC ACCGAGGCGA CCAGGTAGAACACCC aac 314854 - 314309 - | aminoglycoside 2'-N-acetyltransferase AAC (AAC(2')-IC) Rv0263c 315766 - 314864 - | hypothetical protein Rv0264c 316415 - 315783 - | hypothetical protein Rv0265c 317503 - 316511 - | periplasmic IRON-transport lipoprotein TERM 121 317108 - 317137 + g 82 -11.5 -4.07687 | gap 1, overlap 317063 GGTATCGGCGTCCAC CCCGGCGTTGATCG CCA CGATCAG-GTCGGG TTTTAAGGCGGCGAT TERM 122 317227 - 317188 - G 70 -13.4 -3.04144 | gap 1 TGTCCAGGTTCAATA CCGCCGGCCGCGCCC-CGC CGA GCTTGGGCGCCGCCCACGG CCACACCGCAAACGG oplA 321154 - 317525 - | 5-oxoprolinase TERM 123 320387 - 320339 - G 72 -12.9 -3.14548 | overlap 320329 AATAACATGATCGAA GCCGGCCAGCGCCGACATCCGCA CCA TGCCGACGATGCCGCCGGCCGGA CCAGACAGAATCGCG narU 321331 - 322722 + | integral membrane nitrite extrusion protein NarU Rv0268c 323273 - 322764 - | hypothetical protein Rv0269c 324531 - 323338 - | hypothetical protein fadD2 324567 - 326249 + | acyl-CoA synthetase fadE6 328461 - 326266 - | acyl-CoA dehydrogenase FADE6 Rv0272c 329708 - 328575 - | hypothetical protein TERM 124 329505 - 329464 - G 77 -13.1 -3.53343 | gap 1 AAGCTGCTTTCGAAA CCACGGAATCGGGTGTTCCA GCC CAGAA-ACCCGATGCCGCGG ATCGCCATGTACTCG Rv0273c 330325 - 329705 - | transcriptional regulatory protein TERM 125 330376 - 330349 - RH 78 -6.4 -4.63218 | CTCCCTGGAACAAAA CTGAACCTGA TGTTAGAT TCAGATTCAG AGCTTGGCCAGGCCG Rv0275c 331658 - 330933 - | TetR family transcriptional regulator Rv0274 330422 - 331003 + | hypothetical protein TERM 126 331614 - 331586 - Gf 100 -24.7 -2.87564 | CCAGGCCGGCAGAGA GCGACTGGCGACG GCG CGTCGCCAGTCGC TCGGCGGCCTCGACG Rv0276 331748 - 332668 + | hypothetical protein Rv0277c 333136 - 332708 - | hypothetical protein PE_PGRS3 336310 - 333437 - | PE-PGRS family protein TERM 127 333534 - 333576 + g 72 -11.9 -3.55622 | gap 2 GTCCGTTCTCGCCGA GCAGCAGCC-CGC-CGGTGCC GCC GGCACCGGGCGTGGCCCCGGC TTTGCCGGCGTTGCC TERM 128 333777 - 333834 + g 85 -18.1 -2.51464 | opp_overlap 333803, overlap 333815 CTGCCGCCGGCGCCG CCGGCGCCGGCGGAGCCGAAGAGCAAG CCGC CGTTCCCGCCGGCGCCGCCGGCGCCGC CTTGCTGGATGCTGG TERM 129 333815 - 333835 + g 73 -13.9 -3.19642 | opp_overlap 333803, overlap 333777 CAAGCCGCCGTTCCC GCCGGCGCC GCC GGCGCCGCC TTGCTGGATGCTGGT TERM 130 334356 - 334323 - G 81 -11.5 -3.92324 | overlap 334318 334324 GCGCCGAAGAGCAAA CCGGCGTCGCCGCCG CGCC CGCCGGCCCCGCCGA TGCCAGCGACGCCTA TERM 131 335667 - 335623 - G 70 -13.4 -3.01712 | gap 1, overlap 335626 CGGCGGCGCCGAAGA GC-AGGCCGGCGTTGCCGCCA GCCC CGCCGGCGCCGCCGGCCCCGC CCGTGAGGGCTACTA TERM 132 335663 - 335626 - G 77 -16.1 -2.73875 | overlap 335623 CGGCGCCGAAGAGCA GGCCGGCGTTGCCGCCA GCCC CGCCGGCGCCGCCGGCC CCGCCCGTGAGGGCT TERM 133 336511 - 336534 + r 70 -11.6 -3.214 | overlap 336513 TGCTGGGGGATCTGG GCCGGCCGAC CATG GCTGGCCGGC TGTTGGTCTGATGGC PE_PGRS4 339073 - 336560 - | PE-PGRS family protein TERM 134 336605 - 336631 + g 77 -12.9 -3.55622 | GATCAGCCCGCTGGT GCCGCCGGCGC CGGGT GTGCCGCCGGC TTTCCCGCCGTTGCC TERM 135 338294 - 338236 - G 86 -18 -3.01712 | opp_overlap 338287, overlap 338278 338279 CGCCGGCGCCGAACA GCCCGCCAGAGCCGCCATCCCCGCCGGC GCC GCCGCCAAAGATGCCGAATCCGCCGGGC CCACCGGTGCCGCCG TERM 136 338341 - 338363 + g 77 -16.2 -2.52464 | opp_overlap 338320 CGTTTCCGCCGGATC CGCCGGCCCC GCC GGTGCCGGCG TCGGTTGCCCCGCCG TERM 137 338501 - 338454 - G 74 -12.6 -3.53012 | gap 1, overlap 338407 338500 CCGGTGGCGCCGAAA GCGGCTGCGAATCCGCCGGGACC GCC GACCCCGGCGGCCCCG-AACAGC ATGCCGGCGGCCCCG TERM 138 338535 - 338500 - G 74 -14.6 -3.01712 | gap 1, overlap 338454 338503 CGGCGGCCCCGAACA GC-ATGCCGGCGGCCCC GCC GGCGCCGCCGGCGCCGC CGGTCCCCGTGCTGG TERM 139 338531 - 338503 - G 80 -17.3 -2.73875 | overlap 338500 CGGCCCCGAACAGCA TGCCGGCGGCCCC GCC GGCGCCGCCGGCG CCGCCGGTCCCCGTG TERM 140 338677 - 338714 + g 72 -13.3 -3.18681 | opp_overlap 338675 338672, overlap 338703 TGCCGATTAACCAGC CGCCGTCCCCGCCATTG GCCC CGGTGCCGGGGGCGCCG TTGGTGCCGTTGCCG TERM 141 339210 - 339264 + H 100 -22.9 -3.11634 | gap 2, overlap 339211 TCTCCCACATTTATG CGGTCGGCGCGTCGGCCGACGGGAGCT GGC AGCACCCGTGGGCCG--GCGCCGAGCG TTCGCTGGTGTCCGG TERM 142 339865 - 339832 - g 76 -14.6 -3.18383 | gap 1, opp_overlap 339836 ATGGCGACCTATCAA GCGGTCGCCGAGGCC GCGGT GGCGTCGGC-ACCGC AGACCACCCCGGCGC TERM 143 340670 - 340707 + G 70 -8.3 -3.95073 | gap 1, opp_overlap 340657, overlap 340671 AAGCGCGGGCGCGGC GGCGGCGCCGTGTCACGC GGC GCG-GATACGGCGACGAG TTTATGGATATGAAC PPE3 339364 - 340974 + | PPE family protein TERM 144 341340 - 341361 + G 78 -6.5 -4.62069 | gap 1 CGCGCGTACCGGCTG CCTTGG-CCC GAC GGGACCACGG TTTTTGAGCTGGACC Rv0281 340998 - 341906 + | hypothetical protein TERM 145 342304 - 342329 + G 74 -12.5 -3.53811 | opp_overlap 342299 342298 CAGCGTAAACGTCCG CCGGACCTGGC TGCC GCCCGGTCTGG TTTCGCCGCGCTGAC Rv0282 342130 - 344025 + | hypothetical protein TERM 146 345492 - 345465 - g 70 -10.6 -3.55444 | gap 1, opp_overlap 345489 GCTGGAGGCGGCAAA GC-GGTTGAGGCC CTT GGCCTGAACCCGC CCCCGGTCCCCATCC Rv0283 344022 - 345638 + | hypothetical protein TERM 147 346039 - 346096 + G 93 -9.3 -4.87626 | gap 4, overlap 346092 TCCTGACCCGACGGC GTTGGCGTCGGTGCCGGGGTCACGTCGCC AATG GGAG-CGTGACCC-G-CAC-GACCCCGAC TTTTTGGTGTTGCGG TERM 148 347700 - 347675 - g 79 -8.9 -4.40333 | GGCAAAGAACACAAA GGCGTGGGC TTTTTGGT GCCCGCGCC CGGTGCCACCCCGAT TERM 149 348671 - 348634 - g 73 -13.3 -3.25823 | gap 1 CGCGCGCGACAGCAA CGTGCGGGTGGTCGGCGC CCT GCGCCGCCCGGCCG-ACG CCGTCCCGCACGACC TERM 150 349568 - 349589 + G 77 -10.1 -3.96148 | gap 1, opp_overlap 349567 GTGCAGTTGATCAAC CCGCTGGTCG ATG CGGCC-GCGG TTTCTGGTGAAACCC Rv0284 345635 - 349627 + | hypothetical protein PE5 349624 - 349932 + | PE family protein TERM 151 350696 - 350709 + G 70 -2.3 -4.64676 | overlap 350697 GCCGCTGTTGTTCGC GCTGG GCTA CCAGA TTTTCTTCAACCTGG PPE4 349935 - 351476 + | PPE family protein esxG 351525 - 351818 + | hypothetical protein esxH 351848 - 352138 + | low molecular weight protein antigen 7 ESXH (10 kDa antigen) (CFP-7) (protein TB10.4) Rv0289 352149 - 353036 + | hypothetical protein TERM 152 353270 - 353292 + G 71 -9.1 -3.76952 | gap 1, overlap 353271 CCGTGCAACTGAGTT TGGC-GCCCG TCGG CGGGCAGCCG TTTAGCTTGGATGCC Rv0290 353083 - 354501 + | transmembrane protein mycP3 354498 - 355883 + | membrane-anchored mycosin TERM 153 355896 - 355921 + G 71 -12.5 -3.23216 | opp_overlap 355885 TGAACCCGATCCCTT CTTGGCCCGGC AGGG GCCGGGTCACG TTGGTGCTGCTGGCG Rv0292 355880 - 356875 + | transmembrane protein Rv0293c 358064 - 356862 - | hypothetical protein tam 358171 - 358956 + | trans-aconitate methyltransferase tam Rv0295c 359748 - 358945 - | hypothetical protein Rv0296c 361155 - 359758 - | sulfatase TERM 154 361450 - 361495 + G 72 -7.3 -4.26903 | opp_overlap 361443, overlap 361449 361452 361453 CCAGACCACCGGAGT CATGTCGGCGGCCGCCGACGA GGTG TCTACGGCGGTTGCCGCGCTG TTTTCCTCGCATGCC TERM 155 361880 - 361858 - g 90 -18.4 -3.05384 | opp_overlap 361865 361866 CGGGGCCGGAGCGAA CGGCGGCGCC GGC GGCACCGCCG GCTGGTTCTTCGGCT TERM 156 361865 - 361882 + G 72 -14.1 -2.94759 | opp_overlap 361858, overlap 361866 GGAGCGAACGGCGGC GCCGGCG GCAC CGCCGGC TGGTTCTTCGGCTTC TERM 157 361949 - 361984 + G 78 -13.8 -3.61398 | opp_overlap 361942 GGCATCAACGGCGGT CTCGGCGGCGCCGGCG GCGA CGGCGGCAACGCCGGG TTCTTCGGCAACGGC TERM 158 362283 - 362235 - g 100 -28.7 -3.55444 | TCGGGATCGCGCAAA CCGGGGGCGCCGGCGGCGCTGGC GGT GCCGGCGGCGACGGCGCACCCGG TGGCAACGGCGGCAA TERM 159 362937 - 362970 + G 70 -13 -3.01712 | TTTTCAATGCCGGTA CCCCCGGCGCCGCC GGCACG GGCGGTGACGGCGG TGTTGGCGGGACCGG TERM 160 363055 - 363002 - g 83 -15.7 -3.53012 | GCGGCCGGCGGGAAA GGCGGGGCCGGCGGTAGCGGCGGCG TCAA CGGCGCCACCGGCGCCGACGGCGCC AAGGGCCTCGACGGT PE_PGRS5 361334 - 363109 + | PE-PGRS family protein Rv0298 363252 - 363479 + | hypothetical protein Rv0299 363476 - 363778 + | hypothetical protein Rv0300 363826 - 364047 + | hypothetical protein Rv0301 364044 - 364469 + | hypothetical protein TERM 161 364810 - 364820 + G 70 -8.2 -3.9122 | CCATGATGGAGCGCG GCGC GCA GCGC TTCTTTGCCGCGATA Rv0302 364605 - 365237 + | TetR/ACRR family transcriptional regulator Rv0303 365234 - 366142 + | dehydrogenase/reductase PPE5 372764 - 366150 - | PPE family protein TERM 162 368639 - 368667 + g 74 -12.3 -3.53012 | overlap 368642 CGAGGATCGTCGTGC CGGCGCCGCCCTG CAG CAGGCCGGCGATG TTTGCGAGGCCGGAG TERM 163 368642 - 368664 + g 71 -14.8 -2.60496 | overlap 368639 GGATCGTCGTGCCGG CGCCGCCCTG CAG CAGGCCGGCG ATGTTTGCGAGGCCG TERM 164 370087 - 370077 - G 70 -2.4 -4.60487 | overlap 370078 370079 GACCACGTTCAAAAA GCCC GAC GCGC TGCCCGCTCCGGAGT TERM 165 370750 - 370737 - G 70 -2.3 -4.62069 | GCCCGAGTTGAAAAA GCCGA TGTT TCCGC TGCCCGAGTTGAACA PPE6 375711 - 372820 - | PPE family protein TERM 166 374391 - 374354 - G 77 -12.7 -3.66654 | opp_overlap 374348, overlap 374355 374358 GATGTGAAGGGCAAA CGCATGCCCGGAATCGT CATC ACGCTTCCGGGCATGAC CATCACCTGATGTAT TERM 167 374390 - 374355 - G 77 -16.2 -2.79671 | opp_overlap 374348, overlap 374354 374358 ATGTGAAGGGCAAAC GCATGCCCGGAATCGT CATC ACGCTTCCGGGCATGA CCATCACCTGATGTA TERM 168 374387 - 374358 - G 77 -16.5 -2.66326 | opp_overlap 374348, overlap 374355 374354 TGAAGGGCAAACGCA TGCCCGGAATCGT CATC ACGCTTCCGGGCA TGACCATCACCTGAT Rv0306 375914 - 376585 + | putative oxidoreductase Rv0307c 377055 - 376573 - | hypothetical protein Rv0308 377113 - 377829 + | integral membrane protein Rv0309 377931 - 378587 + | hypothetical protein Rv0310c 379148 - 378657 - | hypothetical protein Rv0311 379172 - 380401 + | hypothetical protein Rv0312 380556 - 382418 + | hypothetical protein Rv0313 382490 - 382876 + | hypothetical protein Rv0314c 383541 - 382879 - | hypothetical protein TERM 169 383710 - 383767 + G 93 -10 -4.63218 | gap 5 GACCCGTCCCGGCCG GCCGCGCCGGCTGGTCCGACA-CCGGCGC CCGCC GCGCCGGCTG-CGG-CAA-CCGGTG-GGC TTTTGTTCCACGACG Rv0315 383602 - 384486 + | beta-1,3-glucanase precursor Rv0316 384535 - 385149 + | muconolactone isomerase glpQ2 385943 - 385173 - | glycerophosphoryl diester phosphodiesterase Rv0318c 387099 - 386305 - | integral membrane protein TERM 170 387426 - 387448 + G 72 -6.8 -4.2828 | opp_overlap 387411 CTGCGGGCGGTACGG CCTCGCCGAC TGC GCCGGCAGGG TTTTGGTCGGTGAGC TERM 171 387543 - 387576 + G 80 -15.3 -3.27022 | gap 1, opp_overlap 387538 CATGCGAAAGGCCGG CGTGCCAGCTGACGTC TCG GACG-CGGCGGGCACG TTCGTGTGCAATCAC pcp 387148 - 387816 + | pyrrolidone-carboxylate peptidase Rv0320 387888 - 388550 + | hypothetical protein dcd 388582 - 389154 + | deoxycytidine triphosphate deaminase TERM 172 389818 - 389850 + G 81 -12 -3.96327 | gap 1 GTAGCCGTCCGCGAG CTGTACGCGCCGCTG CTGG CAGCGG-GCGTGCCG TTTCTGGTGACCGAT udgA 389260 - 390591 + | UDP-glucose 6-dehydrogenase UdgA Rv0323c 391251 - 390580 - | hypothetical protein Rv0324 391352 - 392032 + | ArsR family transcriptional regulator Rv0325 392039 - 392263 + | hypothetical protein Rv0326 392273 - 392728 + | hypothetical protein cyp135A1 394045 - 392696 - | cytochrome P450 135A1 Rv0328 394111 - 394713 + | TetR/AcrR family transcriptional regulator Rv0329c 395320 - 394694 - | hypothetical protein Rv0330c 396087 - 395347 - | hypothetical protein Rv0331 396201 - 397367 + | dehydrogenase/reductase Rv0332 397442 - 398227 + | hypothetical protein TERM 173 398529 - 398478 - g 100 -15 -4.63218 | gap 1, opp_overlap 398481 398524 398525, overlap 398481 GGTCGTCGAACAAAA GATCACCAGCGGCGAAGATCCGGGC ATC GCCAGGACCGGCGCCGC-GGCGTTC CGTGTGGTCCAAGAC TERM 174 398526 - 398481 - g 77 -15.3 -2.95538 | gap 1, opp_overlap 398481 398524 398525, overlap 398478 CGTCGAACAAAAGAT CACCAGCGGCGAAGATCCGGGC ATC GCCAGGACCGGCGCCGC-GGCG TTCCGTGTGGTCCAA Rv0333 398254 - 398628 + | hypothetical protein rmlA 398658 - 399524 + | alpha-D-glucose-1-phosphate thymidylyltransferase RmlA PE6 400050 - 399535 - | PE family protein TERM 175 399837 - 399792 - G 79 -16.1 -2.90496 | gap 1, opp_overlap 399765 399828, overlap 399789 CGTGTGCGGAAATCA GTGCC-GCGACGGCCGCCGACA CCT CGTCTTCGGCCGCCGCCAGCAC GCGGGTCTTGTGGCG Rv0336 400192 - 401703 + | 13E12 repeat family protein aspC 403162 - 401873 - | aminotransferase AlaT TERM 176 402402 - 402450 + g 72 -4.5 -4.49344 | gap 1 GTCAGGCACAACATA TCCGGGGCGATCGATGCCAGGC TGATGT GCTTGGCGTCG-TCGTAGAGGA TTTTGTCGTAGATTT Rv0338c 405841 - 403193 - | iron-sulfur-binding reductase TERM 177 403591 - 403630 + g 74 -12.2 -3.53811 | gap 1 GCGTCACCGGTGCGG CAGCCTTAGGAGCG-GCTT TCG GGGCGCGCTCCTGAGCCTG TTTGGCGGCCGTACC TERM 178 404226 - 404208 - G 72 -8.8 -4.16284 | opp_overlap 404207 404204 ACACCCTCGAACAAA CCGTCCAG GGT CTCGACGG CCTGTTGTGCCAGCT Rv0339c 408448 - 405950 - | transcriptional regulatory protein Rv0340 408634 - 409173 + | hypothetical protein TERM 179 409762 - 409777 + G 72 -6.8 -4.2717 | overlap 409745 AGGTCGGCTTGGCTG CCCAGG TCGG TCTGGG TTTTACTGCCGTGAT iniB 409362 - 410801 + | isoniazid inductible gene protein INIB TERM 180 410823 - 410851 + F 91 -15.3 -3.87815 | opp_overlap 410823 AGCCGATTTCACGAA CCGGTGGGGAC GTTCATG GTCCCCGCCGG TTTGTGCGCATACCG TERM 181 410851 - 410823 - f 73 -13.1 -3.16683 | opp_overlap 410823 AGCCGATTTCACGAA CCGGTGGGGAC GTTCATG GTCCCCGCCGG TTTGTGCGCATACCG TERM 182 411322 - 411353 + G 84 -14.4 -3.93695 | gap 1 GGGTCGAGGTCGGCG CGCCCAGCCCGCTGC TGC GGGGCGGGCTGG-CG TTTATCGATACTCCG iniA 410838 - 412760 + | isoniazid inductible gene protein INIA TERM 183 412829 - 412844 + G 85 -5.4 -5.02074 | gap 1, overlap 412828 GGTGCGCCGGCCTAT CGTCAGC GTG GC-GACG TTTTTTGCCAGCTGG iniC 412757 - 414238 + | isoniazid inductible gene protein INIC lpqJ 414941 - 414381 - | lipoprotein LpqJ Rv0345 415050 - 415460 + | hypothetical protein ansP2 416965 - 415502 - | L-asparagine ABC transporter permease TERM 184 416869 - 416848 - G 81 -5.1 -4.82901 | gap 1, overlap 416849 CGGCGCCGAGAAAAA GGCCGGTACC GAT GGCACC-ACC GAGAGCGATCATTTG TERM 185 417429 - 417453 + G 77 -2.7 -4.95876 | overlap 417430 GCGGCGCTGCGCGCT GGGTACCCGGC CTC GATGGGTATCA TTTTTGGTTATCGTT TERM 186 417700 - 417723 + G 74 -12.5 -3.53012 | AAGAAGCTCGTTGCC CGTGATCGC CGCACC GCGATCACG TTTCGACCCGACGCC Rv0347 417304 - 418290 + | hypothetical protein Rv0348 418293 - 418946 + | transcriptional regulatory protein Rv0349 418949 - 419608 + | hypothetical protein dnaK 419835 - 421712 + | molecular chaperone DnaK grpE 421709 - 422416 + | GRPE protein (HSP-70 cofactor) TERM 187 422697 - 422672 - g 95 -17.5 -3.80841 | opp_overlap 422660 AGGAGTACGACGAAA CCCGCCGCCTG TTCG CCGGCGGCGGG TTCGGCGGCCGTCGG dnaJ1 422452 - 423639 + | chaperone protein DnaJ1 TERM 188 423758 - 423785 + G 76 -14.8 -3.09878 | gap 1 TGGGTTGGTCAGCCC GCGGCGCACCTCC GGT GGCGG-GCGCCGC TATTCCCTGCATGAC hspR 423639 - 424019 + | HEAT shock protein transcriptional repressor HspR PPE7 424694 - 424269 - | PPE family protein PPE8 434679 - 424777 - | PPE family protein TERM 189 426860 - 426848 - G 70 -6.2 -4.1822 | CCGGAGTTGAAGAAA CCGG TGTTG CCGG CGCCGGAGTTCAGGG Rv0356c 435474 - 434830 - | hypothetical protein TERM 190 435037 - 435010 - G 73 -9.7 -3.89881 | ATCAACGTGCAGAAA GGCGGTCCGGC TGATCG GCCGTCCCGCC GCATGCGAGATCATG TERM 191 435091 - 435073 - G 77 -10.2 -4.00756 | overlap 435084 CATGTGATCAAACAA CAGCGGCA ACA CGCCGCCG TGCACCGCGGAGTTG purA 436769 - 435471 - | adenylosuccinate synthetase Rv0358 436860 - 437507 + | hypothetical protein Rv0359 437518 - 438297 + | integral membrane protein Rv0360c 438739 - 438302 - | hypothetical protein Rv0361 438822 - 439649 + | hypothetical protein TERM 192 440038 - 440063 + G 79 -16.2 -3.06492 | opp_overlap 440053 AAAGCTTGGCCCACT GCTCGACGGC ACCAAC GCCGTCGAGC TATTCGAGTCGATCG mgtE 439871 - 441253 + | Mg2+ transport transmembrane protein MgtE fba 442299 - 441265 - | fructose-bisphosphate aldolase TERM 193 441717 - 441731 + g 72 -5.6 -4.3898 | overlap 441710 CGTGCTCACCGGCGC CCAGCG CCT CGATGG TTTTCTCGAAGTCCT TERM 194 442733 - 442745 + G 79 -3.3 -5.02074 | opp_overlap 442727 GAAACACTATGTGAC CGAGT CCC ACGCG TTTTTTGAGAAGTAC Rv0364 442395 - 443078 + | transmembrane protein Rv0365c 444197 - 443067 - | hypothetical protein TERM 195 443274 - 443249 - G 74 -14.7 -3.03338 | overlap 443238 AGAACGCCCCGAACA CCGGCAACCCG TCCA CGGTTTGCCGG TAATCCCACGCCGAT Rv0366c 444815 - 444222 - | hypothetical protein Rv0367c 445233 - 444844 - | hypothetical protein Rv0368c 446525 - 445314 - | hypothetical protein Rv0369c 447046 - 446531 - | membrane oxidoreductase TERM 196 446566 - 446600 + g 78 -6.3 -4.62069 | gap 1, opp_overlap 446560, overlap 446569 CCCAGATCAGCAGCA GCACGG-TCAGCGCCG CCAG CAGCGCCGAACCGTAC TTTTTGAGCTGGCCG Rv0370c 448043 - 447147 - | oxidoreductase Rv0371c 448633 - 448040 - | hypothetical protein Rv0372c 449385 - 448630 - | hypothetical protein Rv0373c 451803 - 449404 - | carbon monoxyde dehydrogenase large subunit TERM 197 450415 - 450433 + g 71 -3 -4.63486 | overlap 450415 450414 GATGCCCATCAGCTC GCCGCG CGCTCGC CGCTGC TTTTGTTCGGCGCGT Rv0374c 452279 - 451800 - | carbon monoxyde dehydrogenase small subunit Rv0375c 453154 - 452294 - | carbon monoxyde dehydrogenase medium subunit Rv0376c 454372 - 453230 - | hypothetical protein Rv0377 454421 - 455386 + | LysR family transcriptional regulator Rv0378 455637 - 455858 + | glycine rich protein secE2 455977 - 456192 + | protein transport protein TERM 198 456218 - 456245 + T 74 -4.8 -4.62984 | opp_overlap 456211 456219, overlap 456213 456211 CGAGCAGACGCAAAA TCGCACGGTTTG CGGT TGATTCGTGCGA TTTTGTGTCTGCTCG Rv0380c 456819 - 456268 - | RNA methyltransferase Rv0381c 457823 - 456915 - | hypothetical protein TERM 199 457362 - 457344 - G 77 -13.1 -3.60296 | CATCCCCACCGGAAA CGCGGCC GGATA GGCCGCG GCAGTACCCGGGATC pyrE 458380 - 457841 - | orotate phosphoribosyltransferase Rv0383c 459315 - 458461 - | hypothetical protein TERM 200 459438 - 459397 - R 84 -17.4 -2.79183 | gap 1, opp_overlap 459397, overlap 459404 TCCACGCCGAGCAGA CGAGGAATCGCACTGCGCG GACCT CACGC-GTGCGATTCCGCG TCTGCTCGTCAGACA TERM 201 459397 - 459438 + r 78 -15.9 -2.82516 | gap 1, opp_overlap 459397 459404 TCCACGCCGAGCAGA CGAGGAATCGCACTGCGCGG ACC TCACGC-GTGCGATTCCGCG TCTGCTCGTCAGACA clpB 462002 - 459456 - | endopeptidase ATP binding protein TERM 202 461613 - 461586 - G 86 -17.8 -3.15544 | gap 1 GCGCACCTTGACGAA CGCCTC-CCGCAG CGC CTGCGGCGAGGCG CCGTGGCCGGTCAAC TERM 203 461864 - 461877 + g 70 -5.9 -4.18018 | CCTCCAGTAGCGGTG CGGCG ATAC CGTCG TTTTGGGTCAGCAGC Rv0385 462135 - 463307 + | hypothetical protein Rv0386 463411 - 466668 + | LuxR/UHPA family transcriptional regulator Rv0387c 467406 - 466672 - | PPE family protein PPE9 468001 - 467459 - | PPE family protein TERM 204 467646 - 467629 - G 70 -4.1 -4.56597 | overlap 467632 TGTTCTGTCCAAAAA CATTGGT CTGG ACCAGTG ACAGCATTGTGCGGC TERM 205 469436 - 469398 - g 75 -15.9 -2.79831 | opp_overlap 469432 469435, overlap 469387 TCAACCCGGACCACA CGGCAGGCCGGGCAGCG GTCGG CGCCGCACCACCTGCCG ATGCGCTGACCGGTG purT 468335 - 469594 + | phosphoribosylglycinamide formyltransferase 2 Rv0390 469591 - 470013 + | hypothetical protein metZ 470010 - 471230 + | O-succinylhomoserine sulfhydrylase ndhA 472639 - 471227 - | membrane NADH dehydrogenase TERM 206 472690 - 472708 + H 80 -5.2 -4.8543 | opp_overlap 472682 CACAGTACGACTCCC GTCATGCC AAC GGCGTAAC TTTTTGTGGGCCTTG TERM 207 473354 - 473306 - g 75 -16 -2.78596 | gap 2, overlap 473308 GATCCGCGCAGCACA GATCAGCGCC-G-CGCCGACGCGC TGG GCGCGTTGGCGGCCGGGGCGGATC GGCTGGCCTGCCGCT Rv0393 472781 - 474106 + | 13E12 repeat family protein TERM 208 474083 - 474099 + T 73 -3.5 -4.7373 | overlap 474085 CCACCACCCGATCCC GACGACG ACC CGCCGCC TTTTTGATGAAGTGA Rv0394c 474841 - 474122 - | hypothetical protein Rv0395 474940 - 475344 + | hypothetical protein Rv0396 475350 - 475742 + | hypothetical protein Rv0397 475816 - 476184 + | 13E12 repeat family protein Rv0398c 477320 - 476679 - | hypothetical protein lpqK 478556 - 477327 - | lipoprotein LpqK fadE7 479753 - 478566 - | acyl-CoA dehydrogenase FADE7 TERM 209 479367 - 479382 + g 72 -5.4 -4.30576 | gap 1, opp_overlap 479340, overlap 479367 479368 ACCGGTGGCCATGCC G-GGCAG CCA CTGCCGC TTTTGCTCGTCGGAG TERM 210 479427 - 479403 - G 70 -10 -3.64703 | CTCGTCGGAGCCAAA GCTCGCGATG GCGAA CATCGCCAGC GAACCCTGTACCGAC Rv0401 479789 - 480160 + | transmembrane protein mmpL1 483231 - 480355 - | transmembrane transport protein MmpL1 TERM 211 482126 - 482139 + g 73 -9.5 -4.00868 | opp_overlap 482091, overlap 482128 ACGACCGTGCCGATC CGGCG CCAA CGCCG TTTCGTTGTCGCTCG mmpS1 483656 - 483228 - | membrane protein TERM 212 483833 - 483863 + H 76 -15.5 -2.52464 | AGTCATCGATCCAGA GCCGCTTCGACCA GCCTG TGGTCGAAGCGGA TCAGTTGAACCGGAG fadD30 483977 - 485734 + | acyl-CoA synthetase TERM 213 487608 - 487625 + GT 77 -4 -4.78848 | CTGCGGTGTTGGCAA GCCGGC GGGCAA GACGGC TTTTGTGTTTGCCGG TERM 214 489414 - 489425 + GT 81 -7.2 -4.50976 | overlap 489412 TATTGATGTGGTAGG CGGC AGCT GCCG TTTTGTGCTGTCGGG Rv0406c 490705 - 489887 - | beta lactamase like protein pks6 485731 - 489939 + | membrane bound polyketide synthase fgd1 490783 - 491793 + | F420-dependent glucose-6-phosphate dehydrogenase pta 491786 - 493858 + | phosphate acetyltransferase TERM 215 494363 - 494404 + G 73 -10.8 -3.67141 | gap 1, opp_overlap 494360 494358, overlap 494363 TTCACACCAATACGT CAG-CGAGCGGGCCGCC GCCTTCCTG GGCCGCCCGCTCGACGG TTTGAATCAGATTGT ackA 493851 - 495008 + | acetate kinase pknG 497314 - 495062 - | serine/threonine-protein kinase PKNG (protein kinase G) (STPK G) glnH 498300 - 497314 - | glutamine-binding lipoprotein Rv0412c 499619 - 498300 - | hypothetical protein mutT3 499713 - 500366 + | 7,8-dihydro-8-oxoguanine-triphosphatase thiE 501018 - 500350 - | thiamine-phosphate pyrophosphorylase thiO 501148 - 502170 + | thiamine biosynthesis oxidoreductase ThiO thiS 502167 - 502373 + | sulfur carrier protein ThiS TERM 216 503013 - 503055 + G 86 -18.3 -2.88579 | CCGGGCCGCCGACCC GCCGGCGATGGCCGCGGCG ATGGC CGCCGCGGTGACCGCCGGA TATCTGGCGCGTTGC thiG 502366 - 503124 + | thiazole synthase TERM 217 503851 - 503838 - g 70 -2.3 -4.62471 | overlap 503839 503840 TTCAAGGCCGAAAAA GGGGT GGTG ACCCT CGGCGGCAACACCGT TERM 218 504068 - 504047 - g 71 -12.3 -3.29325 | gap 1, opp_overlap 504048, overlap 504045 TGCCCAGAAGGAAGA CGCAGCCGCG CAG CGCGG-TGCG GTGGCGCTGATCATT lpqL 503496 - 504998 + | lipoprotein aminopeptidase LpqL lpqM 505086 - 506582 + | lipoprotein peptidase LpqM Rv0420c 506971 - 506561 - | transmembrane protein TERM 219 507003 - 506992 - R 72 -7.2 -4.15044 | overlap 506974 506993 GGCTTTGCCAACAAA GGCC GGGT GGCC ACGCCCAGGCAAGTT Rv0421c 507761 - 507132 - | hypothetical protein thiD 508555 - 507758 - | phosphomethylpyrimidine kinase thiC 510225 - 508582 - | thiamine biosynthesis protein ThiC TERM 220 508777 - 508799 + g 71 -9 -3.79519 | GCAGAAGTGCGCGGT CTTGGCCGGC TCC GCCGGCAGGG TTTCGTCGTGGAATT TERM 221 509704 - 509740 + g 100 -20.9 -3.31792 | GGTGGACAGGTCCAT GATGGTGTCGGCCCCCC AGC GGGTGGCCCACACCATC TTGTCGACCTCCTCG Rv0424c 510652 - 510377 - | hypothetical protein ctpH 515321 - 510702 - | metal cation transporting P-type ATPase CtpH TERM 222 511307 - 511348 + g 72 -13.7 -3.01712 | gap 1 CCGGGTCGCTTGGCT TGCTGACCGCGAGCGCCGCC GCG GGCAGTGCGT-CGGTCAGCA TGTTCACCAGCAGCA TERM 223 512844 - 512873 + g 70 -10.1 -3.72576 | gap 1, overlap 512847 GCAGCGACGTTCGAT CAGGTCGACACCCG GCG TGGGT-TCGACTTG TTTGGTCACCGACAG TERM 224 512847 - 512870 + g 70 -8.2 -4.00042 | gap 1, overlap 512844 GCGACGTTCGATCAG GTCGACACCCG GCG TGGGT-TCGAC TTGTTTGGTCACCGA TERM 225 514789 - 514743 - G 73 -10.6 -3.62572 | overlap 514744 GATGACGAGCGGAAA TCGGGGCCAGCGCAGCGCCCGG CCG CCGAGCGCTAAGCCCAGCCCGG CCGCGGTGGCGGCTA Rv0426c 515816 - 515373 - | hypothetical protein xthA 516892 - 516017 - | exodeoxyribonuclease III protein TERM 226 516216 - 516202 - G 74 -12.8 -3.58343 | CCCAGTAGGTGTAAA CCCCGG GTC CCGGGG TGAAAGGCCGTACTA Rv0428c 517803 - 516895 - | hypothetical protein def 518396 - 517803 - | peptide deformylase Rv0430 518733 - 519041 + | hypothetical protein Rv0431 519073 - 519567 + | putative tuberculin related peptide sodC 519600 - 520322 + | periplasmic superoxide dismutase [Cu-Zn] SodC TERM 227 520482 - 520441 - g 70 -11.6 -3.40371 | overlap 520445 GATCTGAGCAATGAA GCCACCGC-GGTTATCGCCG AAAT CGGCGAAAACCCGCGG-GTC CACAAGGAATTGCTG TERM 228 520479 - 520445 - g 77 -16.5 -2.61216 | gap 1, overlap 520441 TGAGCAATGAAGCCA CCGC-GGTTATCGCCG AAAT CGGCGAAAACCCGCGG GTCCACAAGGAATTG Rv0433 520324 - 521454 + | carboxylate-amine ligase Rv0434 521514 - 522167 + | hypothetical protein Rv0435c 524533 - 522347 - | putative ATPase pssA 525390 - 524530 - | CDP-diacylglycerol--serine O-phosphatidyltransferase TERM 229 524969 - 524952 - G 80 -14.1 -3.68351 | opp_overlap 524952 524956 GGCCGATCATGGAAA CCGCGCC CGCC GGCGCGG GCATTCCGACGAAGA psd 526082 - 525387 - | phosphatidylserine decarboxylase moeA2 527360 - 526143 - | molybdopterin biosynthesis protein MoeA2 TERM 230 527263 - 527228 - G 78 -10.4 -4.08767 | gap 1, overlap 527229 CGGAGTTGTCGAAAA CCGGCAGCGACAGCGGT GCG ACCAC-GTCGCCGCCCA GGACCAGACCTTGAG Rv0439c 528314 - 527379 - | short chain dehydrogenase TERM 231 528747 - 528733 - g 91 -11.4 -4.17048 | CGTCCTGGAAAAGAA GTGGGG TGC CCCCAC GATCACCAACGATGG TERM 232 529640 - 529590 - g 76 -15.5 -2.87136 | gap 2 TCACCAAGGACGAGA CCAC-CAT-CGTCGAGGGCGCCGGT GAC ACCGACGCCATCGCCGGACGAGTGG CCCAGATCCGCCAGG groEL 528608 - 530230 + | chaperonin GroEL TERM 233 530251 - 530285 + T 100 -25.1 -2.71731 | opp_overlap 530244 530243, overlap 530253 GCGAGAAGTCGCAGC GAGGAGCCCGGTCCC TTTGT GGGGCCGGGCTCCTC TGGTTGGGAGCTACG TERM 234 530253 - 530283 + T 100 -21.9 -2.90392 | opp_overlap 530244 530243, overlap 530251 GAGAAGTCGCAGCGA GGAGCCCGGTCCC TTTGT GGGGCCGGGCTCC TCTGGTTGGGAGCTA Rv0441c 530724 - 530296 - | hypothetical protein PPE10 532214 - 530751 - | PPE family protein TERM 235 532159 - 532133 - G 72 -13 -3.14132 | CGGTGGCCGCAGCAA TTAGCGGTCCCG ACC CGGGACCGGCAA ACATCAGTGCCGAAT Rv0443 532396 - 532911 + | hypothetical protein Rv0444c 533789 - 533091 - | hypothetical protein sigK 534396 - 533833 - | RNA polymerase sigma factor SigK Rv0446c 535215 - 534445 - | transmembrane protein ufaA1 536507 - 535224 - | cyclopropane-fatty-acyl-phospholipid synthase TERM 236 535772 - 535746 - G 72 -11.5 -3.53224 | gap 1, opp_overlap 535745 535754, overlap 535747 TACCCGGTGGCCAAA GC-CGGCCGCGG CGAC CCGCTGCCGAGC CAGCCGTTGCTGCTC Rv0448c 537169 - 536504 - | hypothetical protein Rv0449c 538548 - 537229 - | hypothetical protein mmpL4 541491 - 538588 - | transmembrane transport protein MmpL4 TERM 237 539807 - 539789 - G 79 -8.8 -4.40993 | opp_overlap 539788 539791, overlap 539791 CAGAAATCATCAAAA TCCGCGAC GTG GTCGCGTA ATTCTTCGGTGATCT TERM 238 540877 - 540859 - G 79 -7.4 -4.51763 | opp_overlap 540875 CAACAACATAATAAA GATCACGG CGA CCGTAACC ATGGTGATCCTGGCC mmpS4 541910 - 541488 - | membrane protein TERM 239 542253 - 542201 - g 85 -10.5 -4.2828 | gap 1, overlap 542204 CCGCACCGAGGAAAA CAAGCGCCAACGTGCG-GCGGC GCTGGTGGAA GCCGCGCGGTCGCTGGCGCTGG AGACGGGCGTGGCAT TERM 240 542250 - 542204 - g 89 -10.8 -4.26327 | gap 1, overlap 542201 CACCGAGGAAAACAA GCGCCAACGTGCG-GCGGC GCTGGTGGAA GCCGCGCGGTCGCTGGCGC TGGAGACGGGCGTGG Rv0452 542142 - 542852 + | transcriptional regulatory protein TERM 241 543447 - 543484 + G 75 -12 -3.73775 | TGCGCCGCGGCGGCT GCC-CGGCTGGAGGCGGT GACC GCCGCCTAC-GCCGCGGC TTTGGTGGCCATGCC PPE11 543174 - 544730 + | PPE family protein Rv0454 544835 - 545185 + | hypothetical protein Rv0455c 545821 - 545375 - | hypothetical protein TERM 242 545795 - 545783 - G 75 -9.1 -4.1021 | GCCGAGAACCAGAAA TGCCG CGC CGGCA CGCAGGATGGAACTC echA2 546803 - 545889 - | enoyl-CoA hydratase Rv0456A 547357 - 547076 - | hypothetical protein Rv0457c 549607 - 547586 - | peptidase Rv0458 549675 - 551198 + | aldehyde dehydrogenase TERM 243 551605 - 551554 - g 81 -10.6 -4.11692 | overlap 551555 CAGCGACGCCGAAAA GGCGATGCGGGAGGCTGCGCCGGT GATC ACCGGCGCAGCCTACGAGTGCGGC GAACGACCGTTAGTG Rv0459 551198 - 551689 + | hypothetical protein Rv0460 551749 - 551988 + | hypothetical protein Rv0461 552026 - 552550 + | hypothetical protein lpd 552614 - 554008 + | dihydrolipoamide dehydrogenase Rv0463 554016 - 554309 + | hypothetical protein Rv0464c 554885 - 554313 - | hypothetical protein Rv0465c 556306 - 554882 - | transcriptional regulatory protein Rv0466 556458 - 557252 + | hypothetical protein TERM 244 557273 - 557292 + F 70 -7.8 -4.08144 | overlap 557254 TCCGCAGGACGTCGA TCCGTGGG TTTA CCTGCGGA TTTGTCGTTACTGGC TERM 245 557317 - 557330 + F 74 -5.3 -4.58283 | ACTGGCGGGTAGCTT CTGAA ACGG TTCAG TTTTTGGGCGACTTC TERM 246 558523 - 558492 - g 73 -3.6 -4.66833 | overlap 558495 558496 GTTCAACTGGAAAAA GCACCTCGACGACG CCAC CATCGCCAAGTTCC AGAAGGAGCTGGCAG icl 557527 - 558813 + | isocitrate lyase TERM 247 558827 - 558868 + F 90 -19.7 -2.79312 | gap 1, opp_overlap 558827 558834, overlap 558834 558865 AGTCTGCCGAGCAGA CGCAAAAGCACC-CTTTTGC GGC GCAAAAGTGGCGCTTTTGCG TCTGCTCGCGCATTT TERM 248 558868 - 558827 - f 100 -21.9 -2.78463 | gap 1, opp_overlap 558827 558834 558865, overlap 558834 AGTCTGCCGAGCAGA CGCAAAAGCACC-CTTTTGC GGC GCAAAAGTGGCGCTTTTGCG TCTGCTCGCGCATTT TERM 249 558834 - 558861 + F 83 -9.2 -4.24948 | gap 1, opp_overlap 558834 558827, overlap 558827 CGAGCAGACGCAAAA GCACC-CTTTTGC GGC GCAAAAGTGGCGC TTTTGCGTCTGCTCG TERM 250 558861 - 558834 - f 89 -11.4 -4.24948 | gap 1, opp_overlap 558827 558834, overlap 558827 CGAGCAGACGCAAAA GCACC-CTTTTGC GGC GCAAAAGTGGCGC TTTTGCGTCTGCTCG fadB2 558895 - 559755 + | 3-hydroxybutyryl-CoA dehydrogenase umaA 559888 - 560748 + | mycolic acid synthase pcaA 561711 - 560848 - | mycolic acid synthase pcaA (cyclopropane synthase) Rv0470A 562294 - 561854 - | hypothetical protein Rv0471c 562713 - 562225 - | hypothetical protein Rv0472c 563427 - 562723 - | TetR family transcriptional regulator TERM 251 563208 - 563221 + g 74 -2.3 -4.82901 | ACCGCATCATCACGG CGGTC GTCA GGTCG TTTTTGTCGACGAAG TERM 252 563609 - 563579 - g 75 -9.5 -4.03234 | opp_overlap 563579 563575 GTGGTGGCACATAAA GCCGAGGTGTCGG GCTCG CCGCCGCCACGGC TGAATTTGAGCACCC Rv0473 563564 - 564934 + | transmembrane protein TERM 253 564966 - 564949 - f 72 -7.7 -4.15222 | overlap 564950 ACGGGTGCTAACAAA CGCTTGC AATA GCAAGCA CTTGGACGTACTCTG Rv0474 565021 - 565443 + | transcriptional regulatory protein hbhA 565797 - 566396 + | iron-regulated heparin binding hemagglutinin hbhA (adhesin) TERM 254 566454 - 566412 - f 100 -28.6 -2.70932 | opp_overlap 566413 TCGGGCTCCGAATCA CCATCGACTCCGAGTCGCCC ACG GGGCGACTCGGAGTCGACGT GTTGGATGCAAACCG TERM 255 566413 - 566453 + F 100 -29.9 -3.08679 | opp_overlap 566412 CGGGCTCCGAATCAC CATCGACTCCGAGTCGCCC ACG GGGCGACTCGGAGTCGACG TGTTGGATGCAAACC Rv0476 566508 - 566771 + | transmembrane protein Rv0477 566776 - 567222 + | hypothetical protein deoC 567222 - 567896 + | deoxyribose-phosphate aldolase Rv0479c 568967 - 567921 - | hypothetical protein TERM 256 568069 - 568090 + g 73 -6.6 -4.41348 | overlap 568065 568070 AGGCTGGAGGTGAAC TCGTTCAG CGTCGA CTGAACGG TTTCTTTCGGCAGCG Rv0480c 569806 - 568964 - | amidohydrolase TERM 257 569980 - 569927 - R 79 -16 -2.52676 | gap 3, overlap 569871 GAGCCGGGCAATCCA GCTTGCGCCCGGCGAC-GAGCGCGCCG TAC CGGCGCGCGCAGGAGCCGG--GCAAGC TGGCACCTCAGACGT Rv0481c 570512 - 569988 - | hypothetical protein murB 570539 - 571648 + | UDP-N-acetylenolpyruvoylglucosamine reductase lprQ 571710 - 573065 + | lipoprotein LprQ Rv0484c 573801 - 573046 - | short-chain type oxidoreductase TERM 258 573309 - 573340 + g 72 -15.1 -2.71144 | TCCCCAGCAGTTCGC CGCGCAGCGTGCG ATGCAG CGCGCCCTGCGCG TGCTTGGCAGCGGTG Rv0485 573984 - 575300 + | transcriptional regulatory protein TERM 259 576602 - 576628 + G 73 -12.3 -3.40403 | gap 2 GGACGGGTGATGAGC CG-GGCGGCG-GC ACG GCACGCCGCCACG TTCTCGTGGGAGAAC Rv0486 575348 - 576790 + | mannosyltransferase Rv0487 576787 - 577338 + | hypothetical protein Rv0488 577664 - 578269 + | integral membrane protein TERM 260 578882 - 578902 + G 77 -5.3 -4.6856 | CCGCTCACCGAATGT CTGGCTGAC GTG GTCGCCCGG TTTTTGCCATATTTC gpm1 578426 - 579175 + | phosphoglyceromutase TERM 261 579967 - 579987 + G 72 -13.3 -3.16191 | ATTGAGGCCAACCGG CTCGGTGAC ATG GTCGCCGAG TTGATCGAGCTATCC senX3 579349 - 580581 + | putative two component sensor histidine kinase SENX3 regX3 580809 - 581492 + | two component sensory transduction protein RegX3 Rv0492c 583378 - 581489 - | oxidoreductase GMC-type Rv0492A 583704 - 583375 - | hypothetical protein Rv0493c 584690 - 583701 - | hypothetical protein Rv0494 584695 - 585423 + | GntR family transcriptional regulator Rv0495c 586314 - 585424 - | hypothetical protein TERM 262 586577 - 586542 - g 70 -13.3 -3.04501 | overlap 586532 ACGAATTCGCCAAGA TTGCCATCAGCTCGG GCTGTG CCGAGCTGATGGCCT TCGCCACGTCGGCGG Rv0496 586394 - 587380 + | hypothetical protein Rv0497 587377 - 588309 + | transmembrane protein Rv0498 588325 - 589167 + | hypothetical protein TERM 263 589234 - 589255 + G 81 -8.7 -4.56597 | CCGCTTGACTCCGAT CCCGGCA ATCCGGCG TGCCGGG TTTTTGAAGGCGAGC Rv0499 589183 - 590058 + | hypothetical protein TERM 264 590224 - 590181 - g 73 -12.5 -3.38046 | gap 2, opp_overlap 590206, overlap 590179 590220 CCGGCAGGTCAAAGA CCTGGTAG-TGGC-CGAGCGG ATGC CCGATCGCGCCAACTACCTGG CGCAGACCTATTCGG proC 590083 - 590970 + | pyrroline-5-carboxylate reductase TERM 265 591138 - 591148 + G 70 -2.4 -4.63218 | opp_overlap 591125 AACGGGCCATCGGCG CGGG ATA CCGG TTTTGTTGAGGGCCA Rv0500A 591111 - 591347 + | hypothetical protein TERM 266 591543 - 591522 - g 83 -4.3 -5.07486 | overlap 591526 CATGTCCAAGAAAAA GCATCGCAA GCTG CTGCGTCGC ACCCGGGTGCAGCGC Rv0500B 591475 - 591576 + | hypothetical protein galE2 591654 - 592784 + | UDP-glucose 4-epimerase Rv0502 592791 - 593867 + | hypothetical protein cmaA2 594779 - 593871 - | cyclopropane-fatty-acyl-phospholipid synthase 2 CMAA2 (cyclopropane fatty acid synthase) (CFA synthase) (cyclopropane mycolic acid synthase 2) (mycolic acid trans-cyclopropane synthetase) TERM 267 594192 - 594206 + g 72 -11.4 -3.50335 | overlap 594188 594184 CATCGGAGACGTCAA GCCCAG CTC CTGGGC TTCCTCTTTGTCCGG Rv0504c 595302 - 594802 - | hypothetical protein serB1 596585 - 595464 - | phosphoserine phosphatase mmpS2 596759 - 597202 + | membrane protein TERM 268 599182 - 599200 + G 100 -11.6 -4.56597 | opp_overlap 599181 599175 AGGAATAACAAGGAC CCCGGCGC GAT GGGCCGGG TTTTTGACGCCGCCC TERM 269 599493 - 599520 + G 73 -11.3 -3.72743 | opp_overlap 599487 599490, overlap 599490 CGCCAGATACGATCT GCTGATCGCCG GAGTGG CGGCGATAAGC TTGATTTTGATCATC mmpL2 597199 - 600105 + | transmembrane transport protein MmpL2 Rv0508 600098 - 600391 + | hypothetical protein hemA 600441 - 601847 + | glutamyl-tRNA reductase hemC 601857 - 602786 + | porphobilinogen deaminase TERM 270 604096 - 604109 + G 80 -9.5 -4.25104 | CGACAGCGTTTTCGA CCCGG TGAA CCGGG TTTTGCTGCCGCGCG hemD 602819 - 604516 + | uroporphyrin-III C-methyltransferase HemD hemB 604602 - 605591 + | delta-aminolevulinic acid dehydratase Rv0513 605604 - 606152 + | transmembrane protein Rv0514 606149 - 606448 + | transmembrane protein Rv0515 606551 - 608062 + | 13E12 repeat family protein Rv0516c 608535 - 608059 - | hypothetical protein TERM 271 609699 - 609717 + G 71 -12.4 -3.25823 | overlap 609713 CAGCCTGGCGATTGG CGTCGGCA GCC TGCCGGCG TTGCTGTCGACGCGG TERM 272 609721 - 609739 + G 70 -3.8 -4.56597 | overlap 609713 609724 AGCCTGCCGGCGTTG CTGTCGAC GCG GTTGATGG TTTTTGGCGGGCAGA Rv0517 608746 - 610056 + | membrane acyltransferase Rv0518 610188 - 610883 + | hypothetical protein Rv0519c 612074 - 611172 - | hypothetical protein Rv0520 612255 - 612605 + | hypothetical protein Rv0521 612598 - 612903 + | hypothetical protein gabP 613038 - 614342 + | GABA permease GabP Rv0523c 614721 - 614326 - | hypothetical protein hemL 614835 - 616223 + | glutamate-1-semialdehyde aminotransferase Rv0525 616223 - 616831 + | hypothetical protein Rv0526 616846 - 617496 + | thioredoxin protein ccdA 617493 - 618272 + | cytochrome C-type biogenesis protein CcdA Rv0528 618305 - 619894 + | transmembrane protein ccsA 619891 - 620865 + | cytochrome C-type biogenesis protein CcsA Rv0530 620907 - 622124 + | hypothetical protein Rv0531 622329 - 622646 + | hypothetical protein TERM 273 622905 - 622954 + GT 77 -7.7 -4.30576 | gap 1, overlap 622871 622911 622912 GGGCCCCGACGATGG CGCTGTTGGCCGCCGGTGCCGATG AGG TGTCGGCGGCGGTGGC-GGCCGTG TTTTCCTCCTACGCC TERM 274 622911 - 622952 + GT 88 -14.3 -3.7574 | overlap 622905 622912 CGACGATGGCGCTGT TGGCCGCCGGTGCCGATGA GGTG TCGGCGGCGGTGGCGGCCG TGTTTTCCTCCTACG TERM 275 622912 - 622951 + GT 79 -15.6 -2.84962 | overlap 622911 622905 GACGATGGCGCTGTT GGCCGCCGGTGCCGATGA GGTG TCGGCGGCGGTGGCGGCC GTGTTTTCCTCCTAC TERM 276 623864 - 623915 + GT 84 -13.6 -3.74693 | gap 1 GGCGGGTGGTTGTAC GGC-GATGGCGGCGCCGGCGGCGTC GGC GGTGTCGGCGGTGCTGTCTTCAGCC TTTCCTCCGGTGACG TERM 277 624359 - 624401 + GT 70 -12.4 -3.1855 | GCCGGGTTGGCGCTT CCCCCGGGGCCGGCGCGGCC GGC GGGGGCGGCGGTGCCGGCGG TTCGCTGTTCGGCAG fabH 625480 - 624473 - | 3-oxoacyl-(acyl carrier protein) synthase III PE_PGRS6 622793 - 624577 + | PE-PGRS family protein TERM 278 625294 - 625331 + gT 70 -11.9 -3.16742 | opp_overlap 625296, overlap 625296 CCTCAGTCGCCATGG AAGCCGCCGACTCGTCG TCGG CGGCGAATCGGCGGGTC TTGATGCCGGTTCGG TERM 279 625296 - 625329 + gT 80 -14.5 -3.14527 | opp_overlap 625296, overlap 625294 TCAGTCGCCATGGAA GCCGCCGACTCGTCG TCGG CGGCGAATCGGCGGG TCTTGATGCCGGTTC TERM 280 625318 - 625296 - GT 84 -16.3 -3.05816 | opp_overlap 625296 625294 TCAGTCGCCATGGAA GCCGCCGAC TCGTC GTCGGCGGC GAATCGGCGGGTCTT menA 626440 - 625562 - | 1,4-dihydroxy-2-naphthoate octaprenyltransferase pnp 626457 - 627251 + | 5'-methylthioadenosine phosphorylase TERM 281 627387 - 627370 - g 74 -12.7 -3.55444 | opp_overlap 627384 CGCGCACGGGCCAAA CCCGGTG CTGC CACCGGG CTGCCAGCGGGTCGA galE3 627248 - 628288 + | UDP-glucose 4-epimerase Rv0537c 629731 - 628298 - | integral membrane protein TERM 282 629663 - 629651 - G 71 -3.3 -4.62069 | overlap 629653 GTTCCATGGGAAAAA CAGCG CAC CGATG AGCAGGGCACCAGCG TERM 283 631471 - 631433 - g 84 -17.4 -3.17212 | TGACCACGCCACCAA CGACCGTCGCCCCGACGA CCG TCGCCCCGACGACGGTCG CTCCGACCACCGTCG TERM 284 631617 - 631668 + G 80 -14.2 -3.62522 | gap 1, opp_overlap 631587 631595 CCCGCAGACGGTGGC GCCGGCTCCGCAGCCGCCG-TCCGG TGG CCGCAACGGCAGCGGCGGGGGCGAC TTATTCGGCGGGTTC Rv0538 630040 - 631686 + | hypothetical protein Rv0539 631743 - 632375 + | dolichyl-phosphate sugar synthase TERM 285 632453 - 632411 - g 77 -13.3 -3.53012 | gap 1, overlap 632412 632436 CTGGTGGTCGCTAAA GCGCCGGAGCCGGGCCGGGT CAAG ACCCGGCT-GGCCGCGGCGA TTGGCGATAAGGTCG TERM 286 632452 - 632412 - g 80 -16.8 -2.71712 | gap 1, overlap 632411 632436 TGGTGGTCGCTAAAG CGCCGGAGCCGGGCCGGGT CAAG ACCCGGCT-GGCCGCGGCG ATTGGCGATAAGGTC Rv0540 632372 - 633034 + | hypothetical protein Rv0541c 634404 - 633055 - | integral membrane protein TERM 287 633937 - 633904 - G 75 -9.5 -4.06678 | gap 1 ATCCAGCCAGACAAA CGTCAGCAGCGCACCC GGC GGGTGC-CCGGAGACG TGAGTCACCCAGGAA TERM 288 634217 - 634188 - G 78 -14.9 -3.32844 | overlap 634206 634207 GCCCCCACGCCACAA CGGCCACTGCGGT AAGA ACCGCCGGGGCCG TGCCCCAGCCAACAT menE 635504 - 634416 - | O-succinylbenzoic acid--CoA ligase TERM 289 634687 - 634649 - G 79 -7.3 -4.66833 | gap 1 CGGCAAGTCCAAAAA CCGCGC-AGTCACGCACC GCAG GGTGGGTGCCCAGTGCGG CCTCCACTGGCTGCG Rv0543c 635875 - 635573 - | hypothetical protein Rv0544c 636213 - 635935 - | transmembrane protein TERM 290 636115 - 636063 - G 85 -17.6 -2.7386 | overlap 636042 636030 636054 AACTGACGGCAACCA GCAGC-GGGCGCCGGCGCGCGGTGGC GTC GGCACCGT-CGCCGGCGGCCTGCAGC CGCACGCCCACCGCG pitA 637463 - 636210 - | inorganic phosphate transporter TERM 291 637314 - 637293 - G 74 -2.2 -4.82901 | GGCGGTGGACAAAAA CGCACCGA TCAGGT TCAGCACG GCAGGAAGTGCTACC Rv0546c 637969 - 637583 - | hypothetical protein Rv0547c 638916 - 638032 - | short chain dehydrogenase menB 639956 - 639012 - | naphthoate synthase Rv0549c 640641 - 640228 - | hypothetical protein Rv0550c 640904 - 640638 - | hypothetical protein TERM 292 640938 - 640905 - R 77 -13.1 -3.61398 | GCGCCGGCTCAACAA GGCCTTCGGCGGG TTCTTTCG CCCGCCGCAGACC GCGAAACCCGCTGTG fadD8 642811 - 641096 - | acyl-CoA synthetase TERM 293 642023 - 642011 - G 89 -10.5 -4.56597 | overlap 642013 CGTCGGCGTGAAAAA CGCCG CGC CGGCG TGCGACAGCGGGGTG Rv0552 642889 - 644493 + | hypothetical protein TERM 294 645247 - 645296 + G 78 -14.2 -3.53224 | gap 2 GCCTGACCGCCGCCG CGGCCCTGCCGGAGCTCGACCACG CGTG CG-GGCTGGGCACCGGC-GGGCTG TTTGAAGAGGACGTG menC 644490 - 645470 + | O-succinylbenzoate synthase bpoC 645467 - 646255 + | peroxidase BpoC menD 646298 - 647962 + | 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylic acid synthase/2-oxoglutarate decarboxylase Rv0556 647959 - 648474 + | transmembrane protein TERM 295 648699 - 648737 + G 70 -13.1 -3.02144 | ACCGCGCCGAGCGAC TTCACGACGGTGTCCGG GTGCA CCGGGTGCCGTCGCGGA TGTTCCCAAAGGTGA TERM 296 649091 - 649121 + G 77 -15.4 -3.01791 | CGCGGGGTGGACGTG CAACGTTTCGCGCC GTC GGCGCGAAACGAGG TGTTGAGGCGACGGT pimB 648536 - 649672 + | mannosyltransferase PIMB ubiE 649689 - 650393 + | ubiquinone/menaquinone biosynthesis methyltransferase Rv0559c 650745 - 650407 - | hypothetical protein Rv0560c 651504 - 650779 - | benzoquinone methyltransferase Rv0561c 652755 - 651529 - | oxidoreductase grcC1 652771 - 653778 + | polyprenyl-diphosphate synthase htpX 653879 - 654739 + | heat shock protein HtpX gpsA 655949 - 654924 - | NAD(P)H-dependent glycerol-3-phosphate dehydrogenase Rv0565c 657470 - 656010 - | monooxygenase Rv0566c 658039 - 657548 - | nucleotide-binding protein Rv0567 658321 - 659340 + | methyltransferase/methylase TERM 297 659363 - 659414 + F 74 -12.2 -3.53343 | opp_overlap 659353 659371, overlap 659364 TGACATGGTGGGTGG CCGACCAACGTGAACTGAGGACGG CAAA TCGGCCTCAGTTCACGCTCGGCGC TTTGAGCAACAAATT TERM 298 659364 - 659413 + F 78 -15.7 -2.71791 | opp_overlap 659353 659371, overlap 659363 GACATGGTGGGTGGC CGACCAACGTGAACTGAGGACGG CAAA TCGGCCTCAGTTCACGCTCGGCG CTTTGAGCAACAAAT TERM 299 659406 - 659371 - f 91 -17.7 -3.14132 | opp_overlap 659364 659363 TGGGTGGCCGACCAA CGTGAACTGAGGACG GCAAAT CGGCCTCAGTTCACG CTCGGCGCTTTGAGC TERM 300 659523 - 659538 + G 79 -3.2 -5.0133 | gap 1, overlap 659524 AGGCCGTGTTGATGT TGC-GCC ATG GGCTGCG TTTTTTGACGGCCTG cyp135B1 659450 - 660868 + | cytochrome P450 135B1 TERM 301 660903 - 660915 + F 76 -9.1 -4.07568 | GGGGTCGCCCAGCGG GTCCC GAG GGGAC TTTTGGCCACCGGCG Rv0569 661003 - 661269 + | hypothetical protein TERM 302 662977 - 662992 + G 76 -6 -4.46212 | overlap 662979 GTGCTTCGACCGACT GGCCCG CGAT CGGGGC TTTTATCGTGACGAG nrdZ 661295 - 663373 + | ribonucleoside-diphosphate reductase large subunit NrdZ TERM 303 663399 - 663440 + T 100 -22.7 -2.78384 | gap 1, opp_overlap 663399 663406, overlap 663406 CATGGCGCGAGCAGA CGCAGAATCGCA-CAAAATC AGC GATTTTGATGCGATTCTGCG TCTGCTCGCGCAGGG TERM 304 663440 - 663399 - T 100 -22.7 -2.78596 | gap 1, opp_overlap 663399 663406, overlap 663406 CATGGCGCGAGCAGA CGCAGAATCGCA-CAAAATC AGC GATTTTGATGCGATTCTGCG TCTGCTCGCGCAGGG TERM 305 663406 - 663433 + T 71 -10.8 -3.40299 | gap 1, opp_overlap 663399 663406, overlap 663399 CGAGCAGACGCAGAA TCGCA-CAAAATC AGC GATTTTGATGCGA TTCTGCGTCTGCTCG TERM 306 663433 - 663406 - T 71 -10.8 -3.40299 | gap 1, opp_overlap 663406 663399, overlap 663399 CGAGCAGACGCAGAA TCGCA-CAAAATC AGC GATTTTGATGCGA TTCTGCGTCTGCTCG Rv0571c 664818 - 663487 - | hypothetical protein TERM 307 664472 - 664500 + g 70 -11.8 -3.36878 | gap 2 AACGGGATGCGGTCA CGCCCGCGGCGGAA GCG TTCCG-CGCGG-CG TTGTAGCTCGATCAG Rv0572c 665383 - 665042 - | hypothetical protein Rv0573c 667242 - 665851 - | nicotinate phosphoribosyltransferase TERM 308 666789 - 666820 + g 72 -13.6 -3.14132 | gap 1, opp_overlap 666780 666777, overlap 666815 AATCCACCACCGGTC GTCCGCGCGCGGCGG CGA CCACC-CGCGCGGCC TTGCTCGCGAGCACG Rv0574c 668394 - 667252 - | hypothetical protein Rv0575c 669745 - 668579 - | hypothetical protein TERM 309 669132 - 669100 - G 70 -10.6 -3.59107 | overlap 669098 AGACGAACAAGAACA TGGTGCGG-TCGCCGC GCA GCG-CGAACCGCGCCA GCTGTCGGTCGACGG Rv0576 669848 - 671152 + | ArsR family transcriptional regulator TB27.3 671166 - 671951 + | hypothetical protein PE_PGRS7 675916 - 671996 - | PE-PGRS family protein TERM 310 672379 - 672434 + g 72 -11.6 -3.53012 | opp_overlap 672398 672409 CGCCGCCCATGCCGC CGGTGCCGCCGGGGCCAAAGGCGG AGCCAAGG CCGCCACTGCCGCCGACGCCACCG TTTCCGGCGCGGCCG TERM 311 672484 - 672542 + g 100 -22.2 -3.54424 | overlap 672485 TCGCGCCCAGGGTGG AACCGGTCCCGCCGGCACCGCCGGCACC ACC GGTGCCGCCGGTGCCGCCGGTGCCGCCA TTTCCGCCAGTCCCG TERM 312 672485 - 672541 + g 100 -25.7 -2.72511 | overlap 672484 CGCGCCCAGGGTGGA ACCGGTCCCGCCGGCACCGCCGGCACC ACC GGTGCCGCCGGTGCCGCCGGTGCCGCC ATTTCCGCCAGTCCC TERM 313 673305 - 673272 - G 70 -10.2 -3.64703 | CCGGTCGCACCGAAA GTGGAGCCGGCG CCGCCACTCC CGCCGGCCCCGC TGGGGCCGGCGTTGC TERM 314 673905 - 673927 + g 74 -10.5 -3.76492 | overlap 673906 AGGCCGGGGTTGCCG AGCCTGCCC AGACC GGGCAGGCC TTTGCTGCCGTTGCC TERM 315 673906 - 673926 + g 71 -14 -2.85574 | overlap 673905 GGCCGGGGTTGCCGA GCCTGCCC AGACC GGGCAGGC CTTTGCTGCCGTTGC Rv0579 676238 - 676996 + | hypothetical protein Rv0580c 677616 - 677125 - | hypothetical protein TERM 316 677811 - 677855 + G 72 -14.2 -2.99947 | gap 1 GGTAATCCGGGAGTC CATCCGGGCGGCGGTCGGC GGCGCCAA GCCG-CCGCCGCGCGGGGG TCTATATGCGGGTTC Rv0581 677710 - 677925 + | hypothetical protein Rv0582 677922 - 678329 + | hypothetical protein lpqN 679075 - 678389 - | lipoprotein LpqN TERM 317 678415 - 678447 + g 82 -17.1 -2.82516 | opp_overlap 678440 TGGTCGTCTGCTCGT CGATGACGTTGGCGG CGT CCATCAACGTCATCG TCTCGTCGTCGAGCG TERM 318 678614 - 678635 + g 71 -2.9 -4.62069 | gap 1, overlap 678615 TGCACTTCCGTCGCC GCTGCCTTGG AAG CCG-GGCAGG TTTTTCAACTCGCCG Rv0584 679229 - 681862 + | hypothetical protein Rv0585c 684272 - 681885 - | integral membrane protein TERM 319 684838 - 684868 + G 75 -9.6 -4.16279 | opp_overlap 684838 684836, overlap 684839 GGACACTGAGGAAGA TCCGATCGTGTGGC AAC GCCACACGCTCGAC TTTTGGGATCATGTG TERM 320 684839 - 684867 + G 72 -13.1 -3.09286 | opp_overlap 684838 684836, overlap 684838 GACACTGAGGAAGAT CCGATCGTGTGGC AAC GCCACACGCTCGA CTTTTGGGATCATGT Rv0586 684410 - 685132 + | GntR family transcriptional regulator TERM 321 685177 - 685200 + G 78 -14.6 -3.29144 | gap 1, opp_overlap 685172 CGCGACCAGACGCAG CCCGCCG-TCG ATG CGATCGGCGGG TTCTACCGGACATGC TERM 322 685833 - 685807 - g 81 -12.3 -3.78775 | GGGCTGACCACGAAA GGCGGCCCCAA GGGAG TTGGAACCGCC GTCAACGAAACCCTG yrbE2A 685129 - 685926 + | integral membrane protein YrbE2a yrbE2B 685928 - 686815 + | integral membrane protein YrbE2b mce2A 686821 - 688035 + | MCE-family protein MCE2A mce2B 688032 - 688859 + | MCE-family protein MCE2B Rv0590A 688808 - 689062 + | MCE family-like protein TERM 323 690055 - 690039 - g 70 -3.5 -4.56597 | overlap 690040 CGCGGCGTTCAAAAA GCGGGGC ATC GACCCGG AGAACTTCTGGCGCA mce2C 689059 - 690504 + | MCE-family protein MCE2C mce2D 690501 - 692027 + | MCE-family protein MCE2D lprL 692024 - 693232 + | MCE-family lipoprotein LprL mce2F 693237 - 694787 + | MCE-family protein MCE2F Rv0595c 695231 - 694839 - | hypothetical protein Rv0596c 695485 - 695228 - | hypothetical protein Rv0597c 696903 - 695668 - | hypothetical protein Rv0598c 697567 - 697154 - | hypothetical protein Rv0599c 697800 - 697564 - | hypothetical protein Rv0600c 698410 - 697904 - | two component sensor kinase TERM 324 698477 - 698493 + r 72 -7.9 -4.15044 | overlap 698478 CAGTTGGTCGGCCAG TCCGCTG AGC CGGCGGG TTTCTTCGAGCGCGG Rv0601c 698994 - 698524 - | two component sensor kinase tcrA 699799 - 699038 - | two component DNA binding transcriptional regulatory protein TCRA Rv0603 699856 - 700167 + | hypothetical protein lpqO 700239 - 701189 + | lipoprotein lpqo Rv0605 701406 - 702014 + | resolvase TERM 325 702603 - 702558 - g 75 -13.1 -3.36515 | gap 1, overlap 702556 CCTCATCGCCAAAGA CCGGGCGCGGGTGCTGGCGATC ACG GTGCGCC-GCAACGGCACCCGG CTGGATGCGAGTGTG Rv0606 702016 - 702759 + | hypothetical protein Rv0607 702813 - 703199 + | hypothetical protein Rv0608 703244 - 703489 + | hypothetical protein Rv0609 703486 - 703887 + | hypothetical protein Rv0609A 703830 - 704057 + | hypothetical protein Rv0610c 705909 - 704752 - | hypothetical protein Rv0611c 706344 - 705961 - | hypothetical protein Rv0612 706324 - 706929 + | hypothetical protein Rv0613c 709515 - 706948 - | hypothetical protein Rv0614 709356 - 710348 + | hypothetical protein Rv0615 710345 - 710587 + | integral membrane protein Rv0616c 710850 - 710584 - | hypothetical protein Rv0617 711006 - 711407 + | hypothetical protein galTa 711536 - 712231 + | galactose-1-phosphate uridylyltransferase galTa TERM 326 712643 - 712672 + GF 74 -12.9 -3.28712 | opp_overlap 712630, overlap 712644 ATCTGGCGGCCGCCG AGTCGGCGATGGA CGCG TTCATCGCCGACG TTATCCCGGAGAGCG TERM 327 712644 - 712671 + GF 80 -16.4 -2.57132 | overlap 712643 TCTGGCGGCCGCCGA GTCGGCGATGGA CGCG TTCATCGCCGAC GTTATCCCGGAGAGC galTb 712174 - 712719 + | galactose-1-phosphate uridylyltransferase GalTb TERM 328 712876 - 712843 - g 77 -16.7 -2.78816 | TCACCCCCGAGCACA CCGGCGCGATCACCG CGCG CAGCGACCGCGCCGA CGGCTCGGCGCGGAT galK 712716 - 713807 + | galactokinase Rv0621 714202 - 715266 + | hypothetical protein TERM 329 716147 - 716125 - g 70 -2.6 -4.59773 | overlap 716126 GGTGACGGTGAAAAA CGGTCAGG GGGACAT CCTGGCCA CGGCCTTCCTGCAGG Rv0622 715370 - 716317 + | hypothetical protein Rv0623 716410 - 716664 + | hypothetical protein TERM 330 716822 - 716802 - g 70 -11.1 -3.48924 | GCACTCGTGATAGAA GCCCGCTTC GGT GAACCGGGC GGACGTGAGCTGGAT Rv0624 716664 - 717059 + | hypothetical protein Rv0625c 717893 - 717153 - | transmembrane protein Rv0626 718025 - 718285 + | hypothetical protein Rv0627 718282 - 718689 + | hypothetical protein Rv0628c 719912 - 718761 - | hypothetical protein TERM 331 719165 - 719130 - G 82 -6 -4.72272 | gap 1 CCCGCGGATCAAAAA GTCGCCCTG-ACCCGGC ACC GCCAGGTGCTCGTCGAC GACGATTCCGATCTG recD 721732 - 720005 - | exonuclease V alpha chain TERM 332 720893 - 720860 - G 71 -12.3 -3.23216 | gap 1 GCCGACGAGGATCAA CCGGGCGCCCG-GGCG CAC CGCCTCGGCCAGCCGG GCCATCAGCGTCAGC recB 725013 - 721729 - | exonuclease V beta chain TERM 333 723450 - 723430 - G 70 -11.1 -3.53811 | CTGAGCGGCCTGAAA CACCGCGGC CAC ACCGCGATG GCGTGCGTGGTCGGC TERM 334 723926 - 723907 - G 88 -16.4 -3.75629 | CACGCGCAACCGAAA CGGCGCCG GGCG CGGCGCCG AGGCCAGGCGGTGCC TERM 335 724723 - 724779 + g 78 -15 -3.28712 | CTTCTGGGCGCGCTC GGCGTCGCTGCCGCGCAGCAG-GTGCTC GAC GAGCTCGCCGCTCGGCGGC-GCGTCGCC TTGTAGCGCGCCCAC recC 728306 - 725013 - | exonuclease V gamma chain TERM 336 725360 - 725339 - G 74 -15.1 -3.02144 | CCAGCTCCCGCAATA CCGCCACCG GGTC CGGCGGCGG CACGAAAAGCCTTCT TERM 337 726527 - 726482 - G 75 -9.1 -4.07568 | gap 4, overlap 726483 726509 GCTGCGCGTCCAAAA GCGCTCGCACGTCGGGCAGCCGC AACA GCGGC-GCC-G-CGCGCGAAC-C GGCGCGCGCCAGCAC TERM 338 727330 - 727382 + g 79 -11.2 -3.9941 | gap 1, opp_overlap 727314 CTACGCCCGGCGGGT CGCGGCGCGTTGCCGGCGATGTCGG CTTG CAGCCATC-CCAGCAACGTGTCGGG TTTGGTTGTGGCACC echA3 729278 - 728583 - | enoyl-CoA hydratase TERM 339 729000 - 728952 - G 72 -7.3 -4.29304 | opp_overlap 728956 GCAGGACAACAGAAA CGCGCCCATGGCGATGGCGTG ACCGGTG CACGCCATCACCACCGGTTTG GGGTAGGACAAGAGG TERM 340 728956 - 728996 + g 70 -11.1 -3.59979 | opp_overlap 728952 GACAACAGAAACGCG CCCATGGCGATGGCGTG ACCGGTG CACGCCATCACCACCGG TTTGGGGTAGGACAA Rv0633c 730166 - 729327 - | hypothetical protein Rv0634c 731033 - 730320 - | glyoxalase II TERM 341 731061 - 731081 + H 71 -11.1 -3.53012 | overlap 731070 TGTCTTGTCCATCGC CGCCCAGAC CGC GTCTTGGCG TTTGCAGCCCGGGAC Rv0634A 731113 - 731364 + | hypothetical protein rpmG 731712 - 731879 + | 50S ribosomal protein L33 Rv0635 731930 - 732406 + | (3R)-hydroxyacyl-ACP dehydratase subunit HadA Rv0636 732393 - 732821 + | (3R)-hydroxyacyl-ACP dehydratase subunit HadB Rv0637 732825 - 733325 + | (3R)-hydroxyacyl-ACP dehydratase subunit HadC TERM 342 733865 - 733835 - g 71 -9.6 -3.85698 | GGCCCTGGTGACAAA GCCGGTGGTGCG GCCGCAA CGTCCCACCGGC AAGCGGTCGCGGTCG secE 733737 - 734222 + | preprotein translocase subunit SecE nusG 734254 - 734970 + | transcription antitermination protein NusG rplK 735022 - 735450 + | 50S ribosomal protein L11 rplA 735517 - 736224 + | 50S ribosomal protein L1 TERM 343 736242 - 736283 + T 100 -29.7 -2.78463 | gap 1, opp_overlap 736242 736249, overlap 736249 TCCCCGGCGAGCAGA CGCATAAGCCCCCG-CACGC ACG GCGTGTCGGGGGCTTATGCG TCTGCTCGCCGGGCT TERM 344 736283 - 736242 - T 100 -29.7 -2.78384 | gap 1, opp_overlap 736242 736249, overlap 736249 TCCCCGGCGAGCAGA CGCATAAGCCCCCG-CACGC ACG GCGTGTCGGGGGCTTATGCG TCTGCTCGCCGGGCT TERM 345 736276 - 736249 - T 95 -19.2 -3.40299 | gap 1, opp_overlap 736242 736249, overlap 736242 CGAGCAGACGCATAA GCCCCCG-CACGC ACG GCGTGTCGGGGGC TTATGCGTCTGCTCG TERM 346 736249 - 736276 + T 95 -19.2 -3.40299 | gap 1, opp_overlap 736249 736242, overlap 736242 CGAGCAGACGCATAA GCCCCCG-CACGC ACG GCGTGTCGGGGGC TTATGCGTCTGCTCG mmaA4 737203 - 736298 - | methoxy mycolic acid synthase mmaA3 738149 - 737268 - | methoxy mycolic acid synthase mmaA2 739160 - 738297 - | methoxy mycolic acid synthase TERM 347 738406 - 738418 + g 75 -4.8 -4.70583 | TCTTCGGACTGGATC GCGA TGGCC TCGC TTTTGTGTTCCTGCA mmaA1 740187 - 739327 - | methoxy mycolic acid synthase lipG 741139 - 740234 - | lipase/esterase LipG TERM 348 740760 - 740704 - G 72 -13.1 -3.21276 | gap 2, overlap 740749 740750 TGTTGCTGGAGAAGA TGACCGCCAGGGTTTTCGTCCGCTGCG CGAAT CGC-GCGG-CGAAAATCTGGGCGATCA TGCCGCCCATCGACG Rv0647c 742617 - 741151 - | hypothetical protein TERM 349 742152 - 742180 + g 73 -13.1 -3.31792 | opp_overlap 742143 742135, overlap 742169 742170 CGAACAGCCGGGCCG GCTCGTCGCCGAG TTC CTCGACGAAGAGC TTGTGCACCTCGTCG TERM 350 742169 - 742196 + g 79 -7.6 -4.56597 | overlap 742152 742170 TCGTCGCCGAGTTCC TCGACGAAGAGC TTGT GCACCTCGTCGG TTTTTGCGGGCGGCA TERM 351 742586 - 742613 + g 75 -15.7 -2.73542 | opp_overlap 742586, overlap 742585 CCGAATGTGTAATGA GGGCGGAAATC CGGCCC GATTTCCGCCC TCATTACACATTCGG TERM 352 742613 - 742586 - G 75 -15.7 -2.73542 | opp_overlap 742585 742586 CCGAATGTGTAATGA GGGCGGAAATC CGGCCC GATTTCCGCCC TCATTACACATTCGG TERM 353 743144 - 743132 - g 75 -4.8 -4.63527 | overlap 743133 CGACCAGCTCAAAAA GGTC GCGCT GACC CGCAACGTGCTCCTG TERM 354 744725 - 744689 - g 86 -17.9 -3.16668 | CAACACGTTCACCAA GGCCGTGCTGGCCGAGG CCG CCCCGGCCTACACCGCC GAACTGCAGCGGCAG Rv0648 742719 - 746366 + | alpha-mannosidase fabD2 746363 - 747037 + | malonyl CoA-acyl carrier protein transacylase Rv0650 747037 - 747945 + | sugar kinase TERM 355 748005 - 747947 - f 80 -16.1 -2.59564 | gap 1, opp_overlap 747962 748003 CGGCCATCGCATAAT GCCGATTGTGAATCTGGCGACGCGACAC GCCG GTGCGGCGTCGCGGGATTCACACTCGG- CGATACGTGTCGCCG TERM 356 748003 - 748020 + F 79 -9.1 -4.18018 | opp_overlap 747947, overlap 747962 CGCGGGATTCACACT CGGCGAT ACGT GTCGCCG TTTTGGCTGACCGGA TERM 357 748172 - 748199 + F 82 -14.9 -3.27298 | gap 1 GCCGGCCTAGTTCCA CGCCCCGACCGC TTCCT GCG-TCGGGGCG TTCGTCGTTCCCGGG TERM 358 748795 - 748782 - g 74 -8.1 -4.25256 | CCTGCAGGAAAAGAA GGCCT GCCC AGGCC CAGACTCAGCCGAGT rplJ 748276 - 748812 + | 50S ribosomal protein L10 rplL 748849 - 749241 + | 50S ribosomal protein L7/L12 Rv0653c 749929 - 749234 - | TetR family transcriptional regulator TERM 359 750411 - 750353 - g 73 -12.5 -3.36273 | opp_overlap 750366, overlap 750349 CGGTCCCAACACCAA CGT-GCTGACCCACGCCGGACGCACCC TGGCCTT GGTTGAGGCCGGCGTGG-TCAACTACG AACTCACCGATGAGC Rv0654 750000 - 751505 + | dioxygenase mkl 751517 - 752596 + | ribonucleotide ABC transporter ATP-binding protein Rv0656c 753367 - 752984 - | hypothetical protein Rv0657c 753617 - 753462 - | hypothetical protein Rv0658c 754409 - 753693 - | integral membrane protein TERM 360 754383 - 754353 - G 73 -11 -3.75024 | overlap 754354 CTCGACGACCAAGAA GGCCCCAAGTCCCC AGC GGTGACTGGGGGCT ACGGTATCGGCACGG TERM 361 754382 - 754354 - G 73 -14.5 -2.84693 | overlap 754353 TCGACGACCAAGAAG GCCCCAAGTCCCC AGC GGTGACTGGGGGC TACGGTATCGGCACG Rv0659c 754993 - 754685 - | hypothetical protein Rv0660c 755225 - 754980 - | hypothetical protein TERM 362 755316 - 755275 - R 100 -29.7 -2.78384 | gap 1, opp_overlap 755282, overlap 755282 CGGCCGGCGAGCAGA CGCATAAGCCCCCG-CACGC TCG GCGTGTCGGGGGCTTATGCG ACTGCTCGCCCGGGG TERM 363 755309 - 755282 - R 95 -19.2 -3.40299 | gap 1, opp_overlap 755282, overlap 755275 CGAGCAGACGCATAA GCCCCCG-CACGC TCG GCGTGTCGGGGGC TTATGCGACTGCTCG TERM 364 755282 - 755309 + r 93 -19.2 -3.31792 | gap 1, opp_overlap 755282 755275 CGAGCAGACGCATAA GCCCCCG-CACGC TCG GCGTGTCGGGGGC TTATGCGACTGCTCG Rv0661c 755772 - 755335 - | hypothetical protein TERM 365 755472 - 755432 - G 71 -12.6 -3.32698 | opp_overlap 755439, overlap 755430 TCAGCCGAGACAAGA GCGGT-CGCGCCGGCGCTTG CGG CAACCGCCG-CGAGCACCGC GTCGCAGGCTTCAAG TERM 366 755439 - 755495 + g 70 -12 -3.48276 | opp_overlap 755432 755430 AGACAAGAGCGGTCG CGCCGGCGCTTGCGGCAACCGCCGCG AGCAC CGCGTCGCAGGCTTCAAGCCCTGGCG TTGTCTCGAACAGCG Rv0662c 756137 - 755769 - | hypothetical protein TERM 367 757823 - 757807 - gH 72 -8 -4.10657 | GGAGATGCCGGAAAA GCTGCA TGAGC TGCAGC GGCTGTGGCTGATCG atsD 756137 - 758500 + | arylsulfatase AtsD Rv0664 758532 - 758804 + | hypothetical protein Rv0665 758801 - 759139 + | hypothetical protein Rv0666 759136 - 759309 + | hypothetical protein TERM 368 760403 - 760427 + G 77 -13.5 -3.59979 | CAGCGTCAAGGTGAT CCCGAGCCGCG GCG CGTGGCTCGAG TTTGACGTCGACAAG TERM 369 761160 - 761144 - g 77 -13.7 -3.35679 | opp_overlap 761157, overlap 761121 GGGGTTGACCCACAA GCGCCGA CTG TCGGCGC TGGGGCCCGGCGGTC rpoB 759807 - 763325 + | DNA-directed RNA polymerase subunit beta rpoC 763370 - 767320 + | DNA-directed RNA polymerase subunit beta' TERM 370 767375 - 767334 - T 87 -18.9 -2.78463 | gap 1, opp_overlap 767334 767341, overlap 767341 AGGTGGGCGAGCAGA CGCAGAATCGCA-CGCGAAA TGC CTGCGCGATGCGATTCTGCG TCTGCTCGCCGTGGT TERM 371 767334 - 767375 + T 86 -18.2 -2.79302 | gap 1, opp_overlap 767334 767341, overlap 767341 AGGTGGGCGAGCAGA CGCAGAATCGCA-CGCGAA ATGCC TGCGCGATGCGATTCTGCG TCTGCTCGCCGTGGT TERM 372 767546 - 767557 + T 72 -7.2 -4.13995 | opp_overlap 767546 ACACGTCGTGAGGAA CCCC GGTC GGGG TTTAGTTTATCGGCC TERM 373 767646 - 767662 + T 77 -13.7 -3.27298 | GTTCCATCGCCGACG CCCAGGC ATG GCCTGGG TTGGTGATTGCGGCC Rv0669c 769597 - 767684 - | hydrolase TERM 374 770228 - 770265 + G 76 -8.3 -4.18018 | gap 1 GCTTCGACACCATCG CCCGGCTCTGG-GACGTC ATC GGCGACACCGGAATCGGG TTTTGCCTGGACACC end 769792 - 770550 + | endonuclease IV lpqP 770582 - 771424 + | lipoprotein LpqP fadE8 771484 - 773112 + | acyl-CoA dehydrogenase FADE8 TERM 375 773753 - 773708 - g 74 -12.5 -3.54741 | gap 1, opp_overlap 773698 GACCAGCGGGCCAAA CGGCTG-CTGTTCACCGGCGAT TGC ATCACCGGCGCGCAGGCCGCCG AGTGGGGCCTGGCGG echA4 773123 - 774061 + | enoyl-CoA hydratase Rv0674 774064 - 774786 + | hypothetical protein echA5 774783 - 775574 + | enoyl-CoA hydratase mmpL5 778480 - 775586 - | transmembrane transport protein MmpL5 mmpS5 778905 - 778477 - | hypothetical protein TERM 376 778833 - 778817 - G 70 -3.6 -4.56702 | TCGGAACCAAAGAAA GTGCGG ATCCG CTGCAC CGTGAAGCCGGCGAT Rv0678 778990 - 779487 + | hypothetical protein Rv0679c 780040 - 779543 - | putative threonine rich protein Rv0680c 780416 - 780042 - | transmembrane protein TERM 377 780302 - 780321 + g 70 -10 -3.66844 | GCTCGATGCCCTGCC CGGTGACA TGGG TGTCGCCG TTCTTGGCGTGTGCG Rv0681 780721 - 781311 + | TetR family transcriptional regulator rpsL 781560 - 781934 + | 30S ribosomal protein S12 rpsG 781934 - 782404 + | 30S ribosomal protein S7 TERM 378 784301 - 784281 - g 86 -9 -4.57569 | gap 1 GCAGGTGCTCAAAAA GGCTGCCGC ACTT GCG-CAGCC GGTGATCCTGGAACC fusA1 782485 - 784590 + | elongation factor G tuf 784821 - 786011 + | elongation factor Tu TERM 379 786029 - 786076 + F 100 -34.6 -2.78463 | opp_overlap 786029 786036, overlap 786036 CTACCGGCCACCAGA CGCAAAAGAACATGATGGGCGC ACCA GCGCCCATCATGTTCTTTTGCG TCTGCTCGCGAAAAT TERM 380 786076 - 786029 - f 100 -34.6 -2.78816 | opp_overlap 786029 786036, overlap 786036 CTACCGGCCACCAGA CGCAAAAGAACATGATGGGCGC ACCA GCGCCCATCATGTTCTTTTGCG TCTGCTCGCGAAAAT TERM 381 786036 - 786069 + F 100 -24.1 -4.24948 | opp_overlap 786036 786029, overlap 786029 CCACCAGACGCAAAA GAACATGATGGGCGC ACCA GCGCCCATCATGTTC TTTTGCGTCTGCTCG TERM 382 786069 - 786036 - f 100 -24.1 -4.24948 | opp_overlap 786029 786036, overlap 786029 CCACCAGACGCAAAA GAACATGATGGGCGC ACCA GCGCCCATCATGTTC TTTTGCGTCTGCTCG Rv0686 786149 - 786946 + | hypothetical protein fabG 787099 - 787926 + | 3-ketoacyl-(acyl-carrier-protein) reductase Rv0688 787940 - 789160 + | putative ferredoxin reductase Rv0689c 789411 - 789157 - | hypothetical protein Rv0690c 791073 - 790024 - | hypothetical protein Rv0691c 791666 - 791070 - | transcriptional regulatory protein TERM 383 792026 - 792001 - g 75 -4.8 -4.58395 | overlap 792002 792003 GTCATTTCTGAAAAA TC-GCACCATCC TCGC GG-TGGTGCAGA CGCTGGCGGATTATC Rv0692 791831 - 792160 + | hypothetical protein pqqE 792157 - 793332 + | coenzyme PQQ synthesis protein E lldD1 793335 - 794525 + | L-lactate dehydrogenase (cytochrome) LldD1 Rv0695 794715 - 795470 + | hypothetical protein Rv0696 795519 - 796931 + | membrane sugar transferase Rv0697 796933 - 798372 + | dehydrogenase Rv0698 798833 - 799444 + | hypothetical protein Rv0699 799629 - 799850 + | hypothetical protein rpsJ 800487 - 800792 + | 30S ribosomal protein S10 rplC 800809 - 801462 + | 50S ribosomal protein L3 TERM 384 801724 - 801686 - g 71 -12.3 -3.31144 | gap 1 GCCCTACCGGCAGAA GGGGACCG-GTCGTGCCC GGCA GGGCTCGACGCGGGCGCC GCAGTTCACCGGCGG rplD 801462 - 802133 + | 50S ribosomal protein L4 rplW 802133 - 802435 + | 50S ribosomal protein L23 rplB 802528 - 803370 + | 50S ribosomal protein L2 rpsS 803411 - 803692 + | 30S ribosomal protein S19 TERM 385 804167 - 804148 - g 81 -10.6 -4.15044 | overlap 804108 804160 GCGCCGGCCAAGAAA GCGGCCGC CAAA GCGCCCGC CAAGAAGGCACCCGC TERM 386 804235 - 804217 - g 77 -8 -4.43208 | ACACCCGCAAAGAAA GCGCCCGC CAA GAAGGCGC CCGCCAAGGCTTCTG rplV 803689 - 804282 + | 50S ribosomal protein L22 rpsC 804282 - 805106 + | 30S ribosomal protein S3 rplP 805110 - 805526 + | 50S ribosomal protein L16 rpmC 805526 - 805759 + | 50S ribosomal protein L29 TERM 387 805866 - 805830 - g 70 -10.9 -3.61398 | gap 1 GGCGGCCCCCAAGAA GGCCGCACCCAACGAC GCTGAG GCCAT-AGGTGCGGCC AACGCGGCAAACGTT rpsQ 805756 - 806166 + | 30S ribosomal protein S17 TERM 388 806215 - 806188 - f 100 -19.2 -4.12188 | gap 1, opp_overlap 806188 CGAGCAGTCGCAAAA GCCCCCGACACGC GCG GCGTG-CGGGGGC TTTTGCGACTGCTCG TERM 389 806188 - 806215 + F 100 -19.2 -4.12188 | gap 1, opp_overlap 806188 CGAGCAGTCGCAAAA GCCCCCGACACGC GCG GCGTG-CGGGGGC TTTTGCGACTGCTCG atsA 806335 - 808698 + | arylsulfatase AtsA Rv0712 808746 - 809645 + | hypothetical protein Rv0713 809946 - 810887 + | transmembrane protein TERM 390 811652 - 811664 + G 75 -4.7 -4.57569 | opp_overlap 811619, overlap 811653 CCCGACAACGACCCG CGCGG CAC CCGCA TTTTTGGACCGGTCG rplN 811373 - 811741 + | 50S ribosomal protein L14 rplX 811742 - 812059 + | 50S ribosomal protein L24 rplE 812059 - 812622 + | 50S ribosomal protein L5 TERM 391 812686 - 812653 - g 77 -12.6 -3.62597 | gap 2, overlap 812638 GGCACTGGTCAACAA GGC-CGCA-GGCAAAC CGAG GTTTGCCGTGCGCGCC TACACCCGTTGCAGC rpsN 812627 - 812812 + | 30S ribosomal protein S14 TERM 392 813112 - 813156 + G 75 -14.4 -3.31263 | gap 1, opp_overlap 813104 813115 813151, overlap 813113 AGAACGAGGGGTACA TCAGCGACTT-CCGAACCGAG GACG CTCGGGTCGGTAAATCGCTGG TTATCCAGCTCAAGT TERM 393 813113 - 813155 + G 74 -15.7 -2.58544 | gap 1, opp_overlap 813104 813115 813151, overlap 813112 GAACGAGGGGTACAT CAGCGACTT-CCGAACCGAG GACG CTCGGGTCGGTAAATCGCTG GTTATCCAGCTCAAG TERM 394 813153 - 813115 - g 71 -14.7 -2.63102 | gap 1, opp_overlap 813113 813112, overlap 813104 813151 ACGAGGGGTACATCA GCGACTT-CCGAACCGAG GACG CTCGGGTCGGTAAATCGC TGGTTATCCAGCTCA rpsH 812976 - 813374 + | 30S ribosomal protein S8 TERM 395 813838 - 813821 - g 90 -4 -5.38958 | overlap 813823 ATCGACAAACAAAAA GTCGGC CAGATC GCCGCC AATATCCGCCGTCTT rplF 813398 - 813937 + | 50S ribosomal protein L6 TERM 396 814176 - 814158 - g 100 -10.2 -4.82901 | overlap 814160 GCCGGGTGACAAAAA GGCCCGCA GTG TGCGGGTC GGCCAGTTGATCGCC rplR 813940 - 814308 + | 50S ribosomal protein L18 TERM 397 814953 - 814967 + G 82 -11.4 -4.09685 | opp_overlap 814952 814947 GTCGGAAAAGTGAAG CGCTGG CCG CCAGCG TTTTGCCGGATAGAA rpsE 814328 - 814990 + | 30S ribosomal protein S5 rpmD 814993 - 815190 + | 50S ribosomal protein L30 rplO 815190 - 815630 + | 50S ribosomal protein L15 TERM 398 815646 - 815687 + F 86 -18.3 -2.78384 | gap 1, opp_overlap 815646 815653 815654, overlap 815654 TTTCGGGCGAGCAGA CGCAAAATGCCCCCGAAA TGCCCAT TTTCGGGGGC-TTTTGCG TCTGCTCGCGGGCCC TERM 399 815687 - 815646 - f 86 -18.3 -2.78384 | gap 1, opp_overlap 815646 815654, overlap 815653 815654 TTTCGGGCGAGCAGA CGCAAAATGCCCCCGAAA TGCCCAT TTTCGGGGGC-TTTTGCG TCTGCTCGCGGGCCC TERM 400 815681 - 815653 - f 85 -10.3 -4.24948 | opp_overlap 815646 815654, overlap 815646 815654 CGAGCAGACGCAAAA TGCCCCCGAAA TGCCCAT TTTCGGGGGCT TTTGCGTCTGCTCGC TERM 401 815680 - 815654 - f 76 -13.8 -3.14487 | opp_overlap 815646 815654, overlap 815653 815646 GAGCAGACGCAAAAT GCCCCCGAAA TGCCCAT TTTCGGGGGC TTTTGCGTCTGCTCG TERM 402 815654 - 815680 + F 100 -13.8 -4.24948 | opp_overlap 815654 815653 815646, overlap 815646 GAGCAGACGCAAAAT GCCCCCGAAA TGCCCAT TTTCGGGGGC TTTTGCGTCTGCTCG sppA 815663 - 817534 + | protease IV SppA Rv0724A 817866 - 817531 - | hypothetical protein Rv0725c 818444 - 817539 - | hypothetical protein Rv0726c 819640 - 818537 - | hypothetical protein fucA 820499 - 819843 - | L-fuculose-phosphate aldolase serA2 821476 - 820496 - | D-3-phosphoglycerate dehydrogenase xylB 821507 - 822853 + | D-xylulose kinase XylB TERM 403 823317 - 823269 - g 80 -9.3 -4.26351 | GACGAACCGAAGAAA TGGGCGCCGCCGGCGATGGATCC GGG GGACCCGCCGGCAGCGTCGACGA CGAGATCCGAGCCGC Rv0730 822866 - 823594 + | hypothetical protein Rv0731c 824639 - 823683 - | hypothetical protein TERM 404 824156 - 824209 + g 77 -15.4 -3.06492 | gap 3, opp_overlap 824150 824149 CGCGCAAATCGACCG CCACGGTGCGCCGGTCGGTCGTGGGTG CCG CACCCA-GGCCGGCCAGCGT-C-GTGG TCTTGAAGTCGATCA TERM 405 824617 - 824629 + g 70 -10.5 -3.70863 | opp_overlap 824605 824617 824616 GAATCGCCCTCAAAG CGGGC ACT GCCCG TTTGCGTCATCTGTA TERM 406 825461 - 825434 - g 70 -11.2 -3.56836 | opp_overlap 825456, overlap 825422 825435 AAAGCATCCTGGAAA GCCGCGGTGGAG TCGT CTTCACCGCGGT CTGCGCGGCCGCGTT TERM 407 825460 - 825435 - g 72 -14.7 -2.73619 | opp_overlap 825456, overlap 825434 825422 AAGCATCCTGGAAAG CCGCGGTGGAG TCGT CTTCACCGCGG TCTGCGCGGCCGCGT secY 824800 - 826125 + | preprotein translocase subunit SecY adk 826122 - 826667 + | adenylate kinase mapA 826670 - 827470 + | methionine aminopeptidase sigL 827543 - 828076 + | RNA polymerase sigma factor SigL Rv0736 828140 - 828892 + | hypothetical protein TERM 408 829677 - 829698 + G 72 -8.7 -4.07568 | gap 1, opp_overlap 829676 GTCGGCCGTCGAAAC GTTG-CGGCG CAA CGCCGGCGAC TTTTGAGGGCGGGCA Rv0737 829207 - 829704 + | transcriptional regulatory protein TERM 409 829716 - 829757 + F 87 -18.9 -2.78384 | gap 1, overlap 829723 829754 TTGAGGGCGGGCAGA CGCGTAAGCGCCCAATGTCG TGC CGAAA-TGGGCGCTTATGCG TCTGCTCGCGCCCGG Rv0738 830062 - 830610 + | hypothetical protein Rv0739 830855 - 831661 + | hypothetical protein Rv0740 831776 - 832303 + | hypothetical protein Rv0741 832534 - 832848 + | transposase TERM 410 833371 - 833391 + G 84 -13.9 -3.9461 | overlap 833372 GCGCCGGGGACCGGG GCCGCCGGC GGG GCCGGCGGA TTGTTGTTCGGCAAC TERM 411 833372 - 833390 + G 82 -17.4 -2.96444 | overlap 833371 CGCCGGGGACCGGGG CCGCCGGC GGG GCCGGCGG ATTGTTGTTCGGCAA TERM 412 833422 - 833448 + G 77 -10.1 -3.9461 | gap 1 GGCGGCGCGGGCGGG TCCGGCGCGCCC GGCG GGGC-CGGCGGA TTGTTGTTCGGCAAC PE_PGRS8 832981 - 833508 + | PE-PGRS family protein Rv0743c 834443 - 833886 - | hypothetical protein Rv0744c 834946 - 834440 - | transcriptional regulatory protein TERM 413 834991 - 834977 - H 88 -6.4 -5.22943 | AGTAAACCCAAAAAA CACAAC ATC GTTGCG GAGCGTGATCGCACC Rv0745 835154 - 835681 + | hypothetical protein TERM 414 836155 - 836213 + G 81 -15.2 -3.61398 | gap 3, overlap 836155 TCGGTAATGGTGGGG CC-GGCGGGTCCGCCGCCGCTGGCTCGGG CCTG CCCG-GCGGG-GCCGGCGGGGCCGCCGGG TTGTTCGGCACCGGC TERM 415 836155 - 836212 + G 100 -21.2 -2.76696 | gap 2, overlap 836155 TCGGTAATGGTGGGG CCGGCGGGTCCGCCGCCGCTGGCTCGGG CCTG CCCG-GCGGG-GCCGGCGGGGCCGCCGG GTTGTTCGGCACCGG TERM 416 837461 - 837477 + G 80 -13.7 -3.71848 | CGGTGGGGCCGGCGG GGCCGGT GGA ACCGGCC TTGTTGGTGGCGACG TERM 417 837732 - 837758 + G 75 -9.2 -4.10953 | overlap 837733 GGGCTGCTGTTCGGC AGCGGCGGCGCC GGC GGCGCCGGCGGA TTTGGTTTCCTCGGT PE_PGRS9 835701 - 838052 + | PE-PGRS family protein TERM 418 839017 - 839053 + G 71 -12.2 -3.28791 | gap 1, opp_overlap 839008, overlap 838992 839018 CGGAAACGCCGGCAT GCTGTTCGGCGCCGCCG GGGT CGGCGGCGTCGG-CGGA TTCTCGAACGGCGGT TERM 419 839018 - 839052 + G 74 -15.7 -2.57132 | gap 1, opp_overlap 839008, overlap 839017 GGAAACGCCGGCATG CTGTTCGGCGCCGCCG GGGT CGGCGGCGTCGG-CGG ATTCTCGAACGGCGG TERM 420 839260 - 839288 + G 70 -11.5 -3.40611 | overlap 839258 839261 839269 CGGCGGATTCGGCGG GGCCGGCGGAGCC GGC GGCGACGCCGGCA TGTTCTTCGGCTCCG TERM 421 839261 - 839287 + G 71 -15 -2.64045 | overlap 839260 839258 839269 GGCGGATTCGGCGGG GCCGGCGGAGCC GGC GGCGACGCCGGC ATGTTCTTCGGCTCC TERM 422 839381 - 839337 - g 83 -9.3 -4.30576 | gap 4, overlap 839339 GCGGCATTAGTAAAA GCGTCGGGGACAGCGCCGCCGGC GGG GCCGGCGG-G--GCCCCCGG-GC TGATCGGCAACGGCG TERM 423 839850 - 839906 + G 72 -14.2 -3.05844 | gap 1, overlap 839855 839856 GCACCGGGGGCAGCG GCGGGCCCGGCGCCACCGGCCTCGGCG GGAT TGGCGGGGCCGGCGGAGCC-GCCTTGC TCTTCGGCTCCGGCG TERM 424 839855 - 839902 + G 73 -12.4 -3.37245 | overlap 839850 839856 GGGGGCAGCGGCGGG CCCGGCGCCACCGGCCTCGGCG GGAT TGGCGGGGCCGGCGGAGCCGCC TTGCTCTTCGGCTCC TERM 425 839856 - 839901 + G 74 -15.9 -2.62026 | overlap 839855 839850 GGGGCAGCGGCGGGC CCGGCGCCACCGGCCTCGGCG GGAT TGGCGGGGCCGGCGGAGCCGC CTTGCTCTTCGGCTC TERM 426 840227 - 840204 - g 75 -16 -2.70932 | gap 1, opp_overlap 840188 CCGGCGGGGGAAGCA CCCTCGCCGGC GGC GCCGGCG-GGG CGGGCGGCAACGGCG TERM 427 840311 - 840337 + G 78 -15 -3.2794 | GGAGTTTCCGGAGGG GCCGGCGGGGCC GGC GGCGACGCCGGC TTGCTCTCCCTCGGC TERM 428 840395 - 840433 + G 77 -13.7 -3.37245 | GGTTCCAGCCTGACC GCCGCCGGCGTGGTCGG CGGCA TCGGCGGCGCCGGAGGC TTGCTCTTCGGCTCC TERM 429 840489 - 840522 + G 71 -9.3 -3.79251 | overlap 840490 TCAGCAACTCTGGCA ACGGCGGCGCCGGCG GGGC CGGCGGCGACGCGGG TTTGCTCGTCGGCTC TERM 430 840636 - 840660 + G 82 -12.7 -3.91434 | overlap 840637 840655 TCGGTCTCGGAGGTG ACGGCGGCGCC GGC GGCGCCACCGG TTTGTCCGGTGCTTT TERM 431 840637 - 840659 + G 79 -16.2 -2.94137 | overlap 840636 840655 CGGTCTCGGAGGTGA CGGCGGCGCC GGC GGCGCCACCG GTTTGTCCGGTGCTT PE_PGRS10 838451 - 840856 + | PE-PGRS family protein Rv0748 840947 - 841204 + | hypothetical protein Rv0749 841228 - 841656 + | hypothetical protein Rv0749A 841874 - 841737 - | hypothetical protein Rv0750 842033 - 842278 + | hypothetical protein TERM 432 842312 - 842353 + T 100 -25.5 -2.78384 | gap 1, opp_overlap 842312 842319, overlap 842319 CTGAGGGCGAGCAGA CGCATAAGCGCCCAATTTCG TGT CGAAAT-GGGCGCTTATGCG TCTGCTCGCGCGCGC TERM 433 842353 - 842312 - T 100 -25.5 -2.79183 | gap 1, opp_overlap 842312 842319, overlap 842319 CTGAGGGCGAGCAGA CGCATAAGCGCCCAATTTCG TGT CGAAAT-GGGCGCTTATGCG TCTGCTCGCGCGCGC TERM 434 842346 - 842319 - T 83 -15 -3.40299 | gap 1, opp_overlap 842319 842312, overlap 842312 CGAGCAGACGCATAA GCGCCCAATTTCG TGT CGAAAT-GGGCGC TTATGCGTCTGCTCG TERM 435 842319 - 842346 + T 83 -15 -3.40299 | gap 1, opp_overlap 842312 842319, overlap 842312 CGAGCAGACGCATAA GCGCCCAATTTCG TGT CGAAAT-GGGCGC TTATGCGTCTGCTCG mmsB 843231 - 842347 - | 3-hydroxyisobutyrate dehydrogenase MmsB TERM 436 843130 - 843091 - G 73 -10.7 -3.72576 | overlap 843094 GGGCGCGCTACGAAA CACCGCGACA-CCGTGCGC GGCG GCGC-CGGACGCCGCCGTG GGTGCCGGGTCGAAT fadE9 844414 - 843242 - | acyl-CoA dehydrogenase FADE9 TERM 437 844193 - 844163 - G 84 -5.2 -4.87665 | overlap 844164 844165 GTGGATGGACAAAAA CGCGGCGGTCACCG GGT CGGCGATCGCCAAC TGCTCGAAGATGCGC mmsA 845953 - 844421 - | methylmalonate-semialdehyde dehydrogenase TERM 438 845640 - 845670 + g 100 -18.2 -4.15565 | ATTACCTCGATGCCG CGCTGGACGTCGCC GCG GGCGTCGGCCAGCG TTTTGCCGTGCTCAC PE_PGRS11 846159 - 847913 + | PE-PGRS family protein PPE12 850040 - 848103 - | PPE family protein Rv0755A 850527 - 850342 - | transposase Rv0756c 851466 - 850741 - | hypothetical protein phoP 851608 - 852351 + | two component system response transcriptional positive regulator PHOP TERM 439 853564 - 853537 - g 70 -10.6 -3.56821 | gap 1 AGCACACCCCGGAAA GCGCCGACGTCAC CGT GCGA-GTCGGCAC CGAGGGCGACGACGC phoR 852396 - 853853 + | two component system response sensor kinase membrane associated PHOR Rv0759c 854157 - 853825 - | hypothetical protein Rv0760c 854686 - 854267 - | hypothetical protein adhB 855826 - 854699 - | zinc-containing alcohol dehydrogenase NAD dependent ADHB Rv0762c 856470 - 855925 - | hypothetical protein Rv0763c 856679 - 856473 - | ferredoxin cyp51 858037 - 856682 - | cytochrome P450 sterol 14-alpha demethylase Rv0765c 858864 - 858037 - | short chain dehydrogenase cyp123 860072 - 858864 - | cytochrome P450 123 Rv0767c 860710 - 860069 - | hypothetical protein TERM 440 860229 - 860280 + g 86 -18.3 -3.05384 | gap 3, opp_overlap 860218 AACACGGTACCGGGA TCGGCGCC-AGGTCCGATCGCCG-AT GTG ATGCGGCGGT-GGATCTCGGCGCCGA TTCGGTCGCGCACCG aldA 860912 - 862381 + | aldehyde dehydrogenase NAD dependent AldA Rv0769 862412 - 863158 + | short chain dehydrogenase Rv0770 863256 - 864143 + | dehydrogenase/reductase Rv0771 864140 - 864574 + | 4-carboxymuconolactone decarboxylase purD 864586 - 865854 + | phosphoribosylamine--glycine ligase ggtA 867389 - 865851 - | bifunctional cephalosporin acylase/gamma-glutamyltranspeptidase TERM 441 867007 - 866997 - G 70 -8.2 -4.0162 | CGGTGAGACCAGAAA GCCG TTG CGGC CGTACGAGATGGCGG TERM 442 867167 - 867197 + g 71 -3.1 -4.59773 | overlap 867168 GCGTCCACGCCGAGG GTGAGCGGCCGGA CGCGT TCAGGCCGTGCAG TTTTTGCCCGTCCCA TERM 443 867438 - 867423 - R 76 -10.4 -3.91798 | GAAGGTCCAACCAAA CGGCGT GCTC ACGCCG CTTAACCTGTGAGCA Rv0774c 868351 - 867440 - | hypothetical protein Rv0775 868407 - 869030 + | hypothetical protein Rv0776c 869763 - 868984 - | hypothetical protein TERM 444 869159 - 869174 + g 83 -8.2 -4.65895 | overlap 869154 TCGATCGGATCCTCG GCGGCC CGCA GGTCGC TTTTTCGCTGCGCGA purB 870008 - 871426 + | adenylosuccinate lyase cyp126 871431 - 872675 + | cytochrome P450 126 Rv0779c 873292 - 872672 - | transmembrane protein hemH 873343 - 874236 + | phosphoribosylaminoimidazole-succinocarboxamide synthase ptrBa 874233 - 874943 + | oligopeptidase B ptrBb 874732 - 876390 + | oligopeptidase B emrB 878440 - 876818 - | multidrug resistance integral membrane efflux protein EmrB TERM 445 878137 - 878113 - G 75 -7 -4.30978 | CCGAACCCATGAAAA GCCGCCTGGT GCCGA ACCGGTCGGC CGCCCAACCGGCTGT Rv0784 878638 - 879324 + | hypothetical protein Rv0785 879340 - 881040 + | putative FAD-binding dehydrogenase Rv0786c 881464 - 881075 - | hypothetical protein Rv0787 881459 - 882418 + | hypothetical protein Rv0787A 882524 - 882763 + | phosphoribosylformylglycinamidine synthase subunit PurS purQ 882760 - 883434 + | phosphoribosylformylglycinamidine synthase subunit I Rv0789c 884050 - 883451 - | hypothetical protein Rv0790c 884800 - 884072 - | hypothetical protein Rv0791c 885840 - 884797 - | hypothetical protein Rv0792c 886646 - 885837 - | GntR family transcriptional regulator Rv0793 886719 - 887024 + | hypothetical protein Rv0794c 888636 - 887137 - | oxidoreductase TERM 446 887572 - 887613 + g 71 -9.3 -3.78597 | gap 1, overlap 887575 887576 887578 TAGCGGTCGTCCGGC GGCACGGGCGCCGATCGCGG TGC CGGCGATCCGCGCCTG-GTA TTTGCCTTGGTGGGT TERM 447 887575 - 887611 + g 77 -14.3 -3.47526 | overlap 887572 887576 887578 CGGTCGTCCGGCGGC ACGGGCGCCGATCGCGG TGC CGGCGATCCGCGCCTGG TATTTGCCTTGGTGG TERM 448 887576 - 887610 + g 85 -17.8 -2.68034 | overlap 887575 887572 887578 GGTCGTCCGGCGGCA CGGGCGCCGATCGCGG TGC CGGCGATCCGCGCCTG GTATTTGCCTTGGTG TERM 449 887578 - 887608 + g 82 -16.8 -2.87581 | overlap 887576 887575 887572 TCGTCCGGCGGCACG GGCGCCGATCGCGG TGC CGGCGATCCGCGCC TGGTATTTGCCTTGG Rv0795 889072 - 889398 + | transposase IS6110 Rv0796 889395 - 890333 + | transposase IS6110 TERM 450 891148 - 891133 - g 75 -9 -4.08216 | TGACCCGGTTCAAAA GCGAAG CCGC CTTCGC CTGCCATGCCGCAGT Rv0797 890388 - 891482 + | IS1547 transposase cfp29 892269 - 891472 - | 29 kDa antigen CFP29 Rv0799c 893273 - 892266 - | hypothetical protein pepC 893318 - 894619 + | putative aminopeptidase 2 Rv0801 894631 - 894978 + | hypothetical protein Rv0802c 895628 - 894972 - | hypothetical protein TERM 451 895835 - 895815 - H 73 -8.9 -4.08216 | GGACCCCGCGCAAAA CGTCGGTGC TGG ACACCGTCG AACACGCCGCGACCA purL 895820 - 898084 + | phosphoribosylformylglycinamidine synthase II Rv0804 898081 - 898710 + | hypothetical protein TERM 452 898842 - 898868 + GT 72 -12.2 -3.29147 | opp_overlap 898840 TCAGGTGCATAGACT TAGGGCCGCGGA GCA TCCGCGGCCGGA TTACGTTCTCTTACA cpsY 901330 - 899732 - | UDP-glucose-4-epimerase CpsY Rv0805 898831 - 899787 + | hypothetical protein TERM 453 901213 - 901193 - Gf 74 -9.7 -3.86015 | overlap 901180 901195 CACCTTTCGCAGAAA GACCAGATC TTC GATCTGGGC CTCCTGGGGGGTCAG TERM 454 901211 - 901195 - Gf 71 -10.9 -3.51934 | overlap 901193 CCTTTCGCAGAAAGA CCAGATC TTC GATCTGG GCCTCCTGGGGGGTC Rv0807 901635 - 902024 + | hypothetical protein TERM 455 902745 - 902731 - g 72 -7.1 -4.2828 | GTTCATGGACGAAAA CACGC TTTAT GCGTG CCGCGACCCGTACGG TERM 456 903499 - 903549 + G 80 -15.3 -3.33696 | GGGATACATCTCGCT GCGGGGCATGGTCGCGGCGTCCG AGCAG CCCACGTCGCGGCTGTGCACCGC TTGCTTCGACGGCAA purF 902111 - 903694 + | amidophosphoribosyltransferase purM 903725 - 904819 + | phosphoribosylaminoimidazole synthetase Rv0810c 905087 - 904905 - | hypothetical protein TERM 457 905139 - 905111 - R 89 -14.6 -3.90744 | opp_overlap 905110 905101 905132 CCCCTCGCGAAATAA CGGAGCGGCCTA ACGAG TAGGCGGCTCCG ATCTCTGGTGTCGTT Rv0811c 906340 - 905234 - | hypothetical protein TERM 458 906370 - 906359 - H 76 -7.2 -4.28762 | opp_overlap 906358 ACAACTCTACGAAAA GCCG CGCT CGGC CTCGTTGACCAGCGT Rv0812 906423 - 907292 + | 4-amino-4-deoxychorismate lyase Rv0813c 908018 - 907338 - | hypothetical protein sseC2 908483 - 908181 - | hypothetical protein TERM 459 908411 - 908422 + g 84 -5.8 -4.86385 | overlap 908387 CGTCCACTACGCGGC CGGT GATC ACCG TTTCTTTTTCCAGGT cysA2 909318 - 908485 - | thiosulfate sulfurtransferase CysA2 thiX 910033 - 909611 - | thioredoxin ThiX Rv0817c 910842 - 910030 - | hypothetical protein TERM 460 911653 - 911626 - g 75 -9.1 -4.03978 | gap 1 AACGTCGGATACAAA GCTGTTCGGCCG GCGCG CGGCCGACC-GC CGGCCGCGGACCCCG Rv0818 910972 - 911739 + | transcriptional regulatory protein Rv0819 911736 - 912683 + | hypothetical protein phoT 912726 - 913502 + | phosphate ABC transporter ATP-binding protein phoY2 914199 - 913558 - | phosphate transport regulator Rv0822c 916311 - 914257 - | hypothetical protein TERM 461 914528 - 914509 - G 95 -5 -5.40072 | gap 1 GCCGGGCGAAAAAAA CACTG-TGG TGG CCAGCAGCG AACTCGGGTAGTCGT TERM 462 915088 - 915058 - G 82 -4.6 -4.9218 | CAGCGACGACAAAAA CAACTGCTGGCG TTTGATG CGCCCGTAGTCG CCATTGCTCTCGGTG TERM 463 915550 - 915587 + g 72 -13.3 -3.09492 | gap 1 CATGACGGTGTCCGA ACGTGCGCCGCCGGCGTC CTC GGCGTCGCCGGCGC-CGA TATTGGCGTTCGCCC TERM 464 916151 - 916118 - G 74 -7.4 -4.26903 | gap 1 GGGAGGTCAGGAAAA GCGGGGCCGAGCCTG GCGAT CAGA-TCGGCCACAC TAACGGCGCCGGTGG Rv0823c 917646 - 916477 - | transcriptional regulatory protein desA1 918750 - 917734 - | acyl-[acyl-carrier protein] desaturase Rv0825c 919553 - 918912 - | hypothetical protein Rv0826 919634 - 920689 + | hypothetical protein Rv0827c 921133 - 920741 - | transcriptional regulatory protein Rv0828c 921613 - 921191 - | deaminase TERM 465 921620 - 921594 - Gg 75 -9.5 -4.09685 | gap 1 GCCCATCGTCGAAAA CCTGC-CATGCC TGCC GGCATGTGCAAG ACATCGGCTGGGACG TERM 466 921788 - 921774 - gH 71 -12.8 -3.06162 | GAGCCGACCGTAAGA CCGGGC CTG GCCCGG CGGGTGGCCGTGAAG TERM 467 921851 - 921839 - gH 70 -10.5 -3.61398 | CCGGCTGGCGAACAA CCCCG AGA CGGGG TGCTAGTCGCGTGAC Rv0829 921575 - 921865 + | hypothetical protein TERM 468 922581 - 922624 + G 70 -2.2 -4.59773 | overlap 922612 CACCGCGTTGAGTGC TCCCGGTAGTCGGCTGGCGT TCGA ATTCGTGCCGGATACCGCGA TTTTTGCCGATGAGC Rv0830 921970 - 922875 + | hypothetical protein Rv0831c 923709 - 922894 - | hypothetical protein TERM 469 925058 - 925112 + G 75 -9 -4.07568 | opp_overlap 925060 CGCGGCGGCCCAGAC CAGCGCGGTGCAGGCCGCGGCCGC GGATGAG GTGTCGGCGGCGATCGCTGCGCTG TTTTCCGCCCACGGG TERM 470 925115 - 925132 + G 75 -9.1 -4.08767 | GATCGCTGCGCTGTT TTCCGCC CACG GGCGGGA TTTTCAGGCGCTCAG PE_PGRS12 924951 - 925364 + | PE-PGRS family protein TERM 471 926741 - 926779 + G 89 -18 -3.45571 | overlap 926733 GCCGTCACGGGAACC GGCGCCACCGGCGGGTCC GGT GGGGCCGGCGGTGGAGCC TTGCTGTTTGGGGCC TERM 472 927133 - 927182 + G 70 -13.6 -3.04398 | gap 3, overlap 927137 CGGCGGCAACGCGGG CTTGCTCGCCCCCGGTCTCGCCGGC GGT GCCGGCG-G--TGGCGGCGGGCAGG GTTTTGACACCGGCG TERM 473 927137 - 927183 + G 85 -12.9 -4.07568 | gap 2, overlap 927133 GGCAACGCGGGCTTG CTC-GCCC-CCGGTCTCGCCGGC GGT GCCGGCGGTGGCGGCGGGCAGGG TTTTGACACCGGCGG TERM 474 927293 - 927317 + G 74 -15 -3.05844 | gap 1, overlap 927295 ACGGGTGGGCCTGGG GC-GGCCGGCG GCGA CGCCGGCCTGC TGTTCGGCTCCGGCG TERM 475 927295 - 927314 + G 77 -16.4 -2.75074 | overlap 927293 GGGTGGGCCTGGGGC GGCCGGCG GCGA CGCCGGCC TGCTGTTCGGCTCCG PE_PGRS13 925361 - 927610 + | PE-PGRS family protein PE_PGRS14 930485 - 927837 - | PE-PGRS family protein TERM 476 929295 - 929258 - G 72 -13.3 -3.14211 | AGCCGCCGGCACCAA CGCCACCGGTCCCGCCG GTGC CGCCGGCACCGGTCGCA GCCCCACCAAGCCCG TERM 477 929496 - 929453 - G 93 -15.8 -4.11394 | opp_overlap 929471 AGTCGAGCGCGAAAA CGGTGCCCGAGGAACCGCCG GCAC CGCCGGCGCCGCCGGCACCG CCGTTAGTACCTGCG lpqQ 930953 - 931597 + | lipoprotein LpqQ Rv0836c 932932 - 932279 - | hypothetical protein Rv0837c 934031 - 933003 - | hypothetical protein lpqR 934720 - 935490 + | lipoprotein LpqR Rv0839 935577 - 936389 + | hypothetical protein TERM 478 936401 - 936417 + T 71 -13.7 -2.60075 | opp_overlap 936391 936395 936392, overlap 936400 ATAAACTCAGGCACA CGCGCGA GGC TCGCGCG GTTGGTTGCCGACGA pip 937317 - 936457 - | proline iminopeptidase Rv0841 937593 - 937835 + | transmembrane protein Rv0842 938112 - 939404 + | integral membrane protein Rv0843 939388 - 940392 + | dehydrogenase TERM 479 940476 - 940519 + T 71 -10.8 -3.40522 | overlap 940483 CGAGCAGCCTCTGCC GCATCGCCTCGGCGACCGCG GCAG CTCGGTCGCTGACGCCGAGC TTCTCGTACAACCGT narL 941106 - 940456 - | nitrate/nitrite response transcriptional regulatory protein NarL TERM 480 941077 - 941053 - G 82 -12.2 -3.90744 | gap 1, opp_overlap 941051 GCCCTCGCGAAATAA CG-GGTGGTCG TCGC CGACCACCACG CGCACTTTCTCCGGC TERM 481 942392 - 942402 + G 70 -2.4 -4.70319 | GGCTCGGGTGGATGC CGCC GGC GGAG TTTTGGTTTTCCTGG Rv0845 941190 - 942467 + | two component sensor kinase Rv0846c 944194 - 942680 - | oxidase lpqS 944343 - 944735 + | lipoprotein LpqS cysK2 944938 - 946056 + | cysteine synthase A CysK2 Rv0849 946056 - 947315 + | integral membrane transport protein Rv0850 947312 - 947644 + | transposase Rv0851c 948468 - 947641 - | short chain dehydrogenase TERM 482 948863 - 948850 - g 74 -8.1 -4.1822 | CTGCAGCGCAACAAA TCGGC TCTG GCCGA CATCGGCGCACACCA TERM 483 949004 - 949050 + G 83 -13.1 -3.85817 | gap 2, opp_overlap 949016, overlap 949005 GGTTCGACGCCATGG GCG-TCGACGATATC-CCGGCGG TCT TCGCCGGCGAGATCGTCGACCGA TTTGTCGCGGCGCCT TERM 484 949005 - 949049 + G 79 -16.6 -2.91276 | gap 2, opp_overlap 949016, overlap 949004 GTTCGACGCCATGGG CG-TCGACGATATC-CCGGCGG TCT TCGCCGGCGAGATCGTCGACCG ATTTGTCGCGGCGCC fadD16 948559 - 949395 + | fatty-acid-CoA ligase pdc 951118 - 949436 - | pyruvate or indole-3-pyruvate decarboxylase pdc Rv0854 951183 - 951626 + | hypothetical protein TERM 485 952485 - 952505 + G 75 -9.6 -4.07885 | GATTTGCCAGCCGAA CCCGCGAC GAGTG GACGCGGG TTTTCGCCGGCACTG far 951632 - 952711 + | fatty-acid-CoA racemase Rv0856 952825 - 953229 + | hypothetical protein Rv0857 953257 - 953730 + | hypothetical protein Rv0858c 954920 - 953727 - | aminotransferase TERM 486 954175 - 954199 + g 82 -11.4 -4.08216 | ACCCCGGCGATGAGT TCGGCTGGGC CGCAA GCCCATCCGA TTTTCCAGCCGGTGC fadA 955077 - 956288 + | acetyl-CoA acetyltransferase TERM 487 956992 - 957013 + G 85 -10.1 -4.17023 | opp_overlap 956976, overlap 957008 CCCGGCGGCACCCCG TCGTCGCCG GGTC TGGCGGCGA TTTTGCCGTCGTTCC TERM 488 958405 - 958425 + G 73 -13.9 -3.14132 | CGGGCCCGCGAGCTG GCGGCCGCC TAC GGCGACCGC TTCCTGCCGCCGGAG fadB 956293 - 958455 + | fatty oxidation protein FadB TERM 489 958467 - 958508 + T 100 -28.3 -2.78384 | gap 1, opp_overlap 958467 958474, overlap 958474 CTGAGCGCGAGCAGA CGTAAAAGCCCCCG-CACGC TCG GCGTGTCGGGGGCTTTTACG TCTGCTCGCGCAACC TERM 490 958508 - 958467 - T 100 -28.3 -2.79183 | gap 1, opp_overlap 958467 958474, overlap 958474 CTGAGCGCGAGCAGA CGTAAAAGCCCCCG-CACGC TCG GCGTGTCGGGGGCTTTTACG TCTGCTCGCGCAACC TERM 491 958474 - 958501 + T 100 -19.2 -4.24948 | gap 1, opp_overlap 958467 958474, overlap 958467 CGAGCAGACGTAAAA GCCCCCG-CACGC TCG GCGTGTCGGGGGC TTTTACGTCTGCTCG TERM 492 958501 - 958474 - T 100 -19.2 -4.24948 | gap 1, opp_overlap 958474 958467, overlap 958467 CGAGCAGACGTAAAA GCCCCCG-CACGC TCG GCGTGTCGGGGGC TTTTACGTCTGCTCG ercc3 960151 - 958523 - | DNA helicase ErcC3 TERM 493 958608 - 958592 - G 70 -2.2 -4.65895 | overlap 958593 CTGCTCAGCTAAAAA CCGC TGCCGGTGT GCGG CGTACTCGGCATCCA Rv0862c 962612 - 960342 - | hypothetical protein Rv0863 962599 - 962880 + | hypothetical protein moaC 962890 - 963393 + | molybdenum cofactor biosynthesis protein C mog 963390 - 963872 + | molybdopterin biosynthesis Mog protein TERM 494 964144 - 964189 + G 74 -12.6 -3.56643 | gap 3, overlap 964145 CTTGCAGGTCGGGGA GGCCG-CC-CTGGTGG-CGGCGG TTG CCGCCGATCACCGGCGGGCGGCG TTTGGCACCTGTGCG TERM 495 964145 - 964188 + G 77 -16.1 -2.73771 | gap 3, overlap 964144 TTGCAGGTCGGGGAG GCCG-CC-CTGGTGG-CGGCGG TTG CCGCCGATCACCGGCGGGCGGC GTTTGGCACCTGTGC moaE2 963869 - 964294 + | molybdenum cofactor biosynthesis protein E2 rpfA 965535 - 964312 - | resuscitation-promoting factor RpfA TERM 496 964536 - 964562 + g 71 -9.3 -3.84246 | CCGGGCCGCCTGGAG CTGTGGCGGGC TGATC GCCCGGCGCGG TTTGCTCGTTCACCG moaD2 966261 - 965983 - | molybdenum cofactor biosynthesis protein D moaA 967347 - 966265 - | molybdenum cofactor biosynthesis protein A Rv0870c 967733 - 967344 - | hypothetical protein TERM 497 967824 - 967851 + H 77 -12.6 -3.66784 | overlap 967826 GATCTTCAGATCGTC ATCGCGTCCCGC GCAG GCGGGACGCGTC TTCTGTTGCCAATCC TERM 498 967826 - 967849 + H 100 -19.6 -3.41292 | overlap 967824 TCTTCAGATCGTCAT CGCGTCCCGC GCAG GCGGGACGCG TCTTCTGTTGCCAAT cspB 967898 - 968305 + | cold shock-like protein B CspB PE_PGRS15 970244 - 968424 - | PE-PGRS family protein TERM 499 969313 - 969283 - G 86 -18.2 -3.05816 | GCATTGCCGATGGAA GCGGCGCTGCCGCC GGC GCCGCCAGCGCCGC CATAGGCGCCCTCAC TERM 500 969900 - 969926 + g 73 -15.8 -2.50994 | overlap 969899 969925 GTTGCCGATCAGGGG GCGCCCGAGCAG CGT CTGCGTGGGCGC GTTGATCACATTCAA TERM 501 970382 - 970346 - H 100 -14.3 -4.70659 | opp_overlap 970349 CTTGACATGGAAAAA CGGCGGCCCCGACCCTG CCT CAGCGTCGCAGCCGTCG TTGGCGGCGAGCACC TERM 502 970987 - 971005 + G 81 -5.2 -4.72272 | CCTACCGCGGTGTGC GGCCGG CGCGATA TCGGCC TTTTTACTAACCGAA TERM 503 971677 - 971661 - g 71 -13.7 -2.8805 | ATGAGTTGCTACAGA TCCGCGG TGG CCGCGGA TACGAGACCGCCGAA fadE10 970505 - 972457 + | acyl-CoA dehydrogenase FADE10 Rv0874c 973706 - 972546 - | hypothetical protein Rv0875c 974294 - 973806 - | hypothetical protein Rv0876c 975937 - 974291 - | transmembrane protein TERM 504 976647 - 976658 + G 72 -7.2 -4.2461 | opp_overlap 976639, overlap 976617 GACGAAACGCGTCTG CCGC GACT GCGG TTTCTTCCTGCCGCT Rv0877 976075 - 976863 + | hypothetical protein PPE13 978203 - 976872 - | PPE family protein TERM 505 978021 - 977982 - G 100 -20.6 -2.95388 | overlap 977974 CAGCCAACTCAGATA CGGTGCGGCCGCGGCCGC CATC GCGGCCGCCGCCGGACCC TGCCACGCCGAACCC TERM 506 978394 - 978436 + r 71 -9 -3.7108 | opp_overlap 978386, overlap 978397 TCGAAATCCTGTCGC CAACCCCGACAGCCGGGTTC CGG GAAGCCGGGTGTCGCAGTGG TTTAGGTGTCGACGT Rv0879c 978756 - 978481 - | transmembrane protein Rv0880 978934 - 979365 + | MarR family transcriptional regulator Rv0881 979362 - 980228 + | rRNA methyltransferase Rv0882 980225 - 980509 + | hypothetical protein Rv0883c 981267 - 980506 - | hypothetical protein serC 982554 - 981424 - | phosphoserine aminotransferase Rv0885 982762 - 983784 + | hypothetical protein fprB 983803 - 985530 + | NADPH:adrenodoxin oxidoreductase FprB Rv0887c 985971 - 985513 - | hypothetical protein Rv0888 987233 - 988705 + | hypothetical protein citA 989861 - 988740 - | citrate synthase 2 Rv0890c 992596 - 989948 - | LuxR family transcriptional regulator TERM 507 990386 - 990412 + g 70 -13.6 -3.07443 | TTCGGAGTGACTGCC GACCTCGCCGGC CAG GCCGGCGAGGAG TTCCATGGCATCTGG Rv0891c 993455 - 992598 - | transcriptional regulatory protein Rv0892 993853 - 995340 + | monooxygenase Rv0893c 996295 - 995318 - | hypothetical protein Rv0894 996524 - 997705 + | LuxR family transcriptional regulator Rv0895 997782 - 999299 + | hypothetical protein TERM 508 1000200 - 1000222 + G 86 -17.8 -3.06671 | overlap 1000167 GTCGACGGTTCGGCT GGTTGGCTCG TCG CGAGCCAACC TGTTCACCTCGATCT gltA 999472 - 1000767 + | type II citrate synthase TERM 509 1000781 - 1000822 + T 81 -16.2 -2.78384 | opp_overlap 1000781 1000788, overlap 1000789 1000790 AGGCCGGCGAGCAGA CGCAAAAGCCCCCTAA-ACC GGCA GGTATTAGGGG-CTTTTGCG TCTGCTCGCCAGGCA TERM 510 1000822 - 1000781 - T 86 -18.1 -2.78463 | opp_overlap 1000781 1000789 1000790, overlap 1000788 AGGCCGGCGAGCAGA CGCAAAAGCCCCCTAAACC GGCA GGTATTAGGGGCTTTTGCG TCTGCTCGCCAGGCA TERM 511 1000815 - 1000788 - T 76 -7.6 -4.24948 | opp_overlap 1000781 1000789 1000790, overlap 1000781 CGAGCAGACGCAAAA GCCCCCTAAACC GGCA GGTATTAGGGGC TTTTGCGTCTGCTCG TERM 512 1000789 - 1000815 + T 71 -5.9 -4.24948 | gap 1, opp_overlap 1000788 1000781, overlap 1000781 1000790 GAGCAGACGCAAAAG CCCCCTAA-ACC GGCA GGTATTAGGGGC TTTTGCGTCTGCTCG Rv0897c 1002415 - 1000808 - | oxidoreductase Rv0898c 1002704 - 1002441 - | hypothetical protein ompA 1002812 - 1003792 + | outer membrane protein A OMPA Rv0900 1003805 - 1003957 + | hypothetical protein Rv0901 1003957 - 1004484 + | hypothetical protein prrB 1005841 - 1004501 - | two component sensor histidine kinase PRRB prrA 1006562 - 1005852 - | two component response transcriptional regulatory protein PRRA TERM 513 1006628 - 1006669 + r 86 -18.3 -2.78596 | gap 1, opp_overlap 1006628 1006630 1006632 1006634, overlap 1006630 1006632 1006634 TGCTGGGCGAGCAGA CACAGAGTCGCATCAAAACC GCC GATTTTG-TGCGACTCTGTG TCTGCTCGCGGGGTG TERM 514 1006669 - 1006628 - R 91 -20.5 -2.78384 | gap 1, opp_overlap 1006628 1006630 1006632 1006634, overlap 1006630 1006632 1006634 TGCTGGGCGAGCAGA CACAGAGTCGCATCAAAACC GCC GATTTTG-TGCGACTCTGTG TCTGCTCGCGGGGTG TERM 515 1006630 - 1006667 + r 79 -15.1 -2.94099 | gap 1, opp_overlap 1006628 1006630 1006632 1006634, overlap 1006628 1006632 1006634 CTGGGCGAGCAGACA CAGAGTCGCATCAAAACC GCC GATTTTG-TGCGACTCTG TGTCTGCTCGCGGGG TERM 516 1006667 - 1006630 - R 87 -17.3 -2.94099 | gap 1, opp_overlap 1006630 1006628 1006632 1006634, overlap 1006628 1006632 1006634 CTGGGCGAGCAGACA CAGAGTCGCATCAAAACC GCC GATTTTG-TGCGACTCTG TGTCTGCTCGCGGGG TERM 517 1006665 - 1006632 - R 75 -14.1 -3.02471 | gap 1, opp_overlap 1006632 1006630 1006628 1006634, overlap 1006630 1006628 1006634 GGGCGAGCAGACACA GAGTCGCATCAAAACC GCC GATTTTG-TGCGACTC TGTGTCTGCTCGCGG accD3 1008180 - 1006693 - | putative acetyl-coenzyme A carboxylase carboxyl transferase (subunit BETA) ACCD3 (ACCASE BETA chain) echA6 1008207 - 1008938 + | enoyl-CoA hydratase TERM 518 1008958 - 1009004 + G 73 -13.7 -3.09327 | gap 1 CATGGTGCGCCGAGC GCTACG-ACTGGCGGCCGGC ACCGCCTC GCTGGCCGCCGGCACGTGGC TGTTGCGTGCGCTGC Rv0906 1008944 - 1010062 + | hypothetical protein Rv0907 1010136 - 1011734 + | hypothetical protein ctpE 1011731 - 1014124 + | metal cation transporter ATPase P-type CtpE Rv0909 1014681 - 1014860 + | hypothetical protein Rv0910 1014866 - 1015300 + | hypothetical protein Rv0911 1015398 - 1016171 + | hypothetical protein Rv0912 1016236 - 1016685 + | transmembrane protein Rv0913c 1018725 - 1017217 - | dioxygenase TERM 519 1018509 - 1018483 - G 72 -13 -3.09516 | TTTTCCATCACGGAA GCCGACGACATG GAT CATGCCGTCGCC ATCGAAGGGGTGGTA Rv0914c 1019965 - 1018727 - | acetyl-CoA acetyltransferase TERM 520 1019135 - 1019167 + g 77 -11.1 -3.85698 | overlap 1019136 GTGCGGCAGTAGGTA GGGGGCCGAGTCGCC CTG GGCGACGCGGTCCAG TTTCTGCCGCAGACC TERM 521 1019136 - 1019166 + g 73 -14.6 -2.91276 | overlap 1019135 TGCGGCAGTAGGTAG GGGGCCGAGTCGCC CTG GGCGACGCGGTCCA GTTTCTGCCGCAGAC PPE14 1021329 - 1020058 - | PPE family protein TERM 522 1021252 - 1021219 - G 76 -14.5 -3.17075 | gap 1, overlap 1021203 1021201 CGCGGCGGAAGTCAA CTCCGCGGCCACACCG TCC CAG-GCGGCCGCGGCG GCTAGCATCGACTCC PE7 1021643 - 1021344 - | PE family protein TERM 523 1022478 - 1022500 + G 71 -14.8 -2.52516 | overlap 1022477 ACTACCTGCGGCCAC CGCGGTCACG CGG CGTGCCCGCG CTTACTGATGCGGCG betP 1022087 - 1023868 + | glycine betaine transport integral membrane protein BetP Rv0918 1024211 - 1024687 + | hypothetical protein Rv0919 1024684 - 1025184 + | hypothetical protein Rv0920c 1026816 - 1025497 - | transposase TERM 524 1026894 - 1026932 + H 71 -8.1 -3.89524 | gap 1, opp_overlap 1026904, overlap 1026897 CCACTTACACCGAAT CAGCGATAGACCCCTCCG GCGG CGGGGGGGT-TGGCGGTG TTTGTGGCGTCCGGT TERM 525 1027473 - 1027506 + G 71 -13.9 -2.94099 | gap 1 CATCGGGATCGGCTG GCG-CGTTTCGGGGTG GAG CACCTCGAGGCGGCGC TGTCTGCTCAGGGCC Rv0921 1027104 - 1027685 + | resolvase TERM 526 1028686 - 1028641 - g 87 -14.5 -3.77087 | overlap 1028642 CATCGAATACCCAAA CCCGGCCCCGCTCAAGGCGAC ACTC GTCGCCCGTCGCAGGGCCGGC CGAGAACTTTCCCGC TERM 527 1028685 - 1028642 - g 86 -18 -2.8577 | overlap 1028641 ATCGAATACCCAAAC CCGGCCCCGCTCAAGGCGAC ACTC GTCGCCCGTCGCAGGGCCGG CCGAGAACTTTCCCG Rv0922 1027685 - 1029337 + | transposase Rv0923c 1030577 - 1029513 - | hypothetical protein mntH 1031864 - 1030578 - | manganese transport protein MntH TERM 528 1031255 - 1031234 - G 72 -7.3 -4.17048 | gap 1, overlap 1031253 1031254 CCGCGGCCAAAAGAA CGCTCTC-GG TTC CCTGAAAGCG CGGTGCCAAACCGCC Rv0925c 1032633 - 1031896 - | hypothetical protein Rv0926c 1033786 - 1032710 - | hypothetical protein Rv0927c 1034631 - 1033840 - | short chain dehydrogenase pstS3 1034903 - 1036015 + | periplasmic phosphate-binding lipoprotein PSTS3 (PBP-3) (PSTS3) (PHOS1) pstC2 1036028 - 1037002 + | phosphate ABC transporter transmembrane protein TERM 529 1037091 - 1037103 + G 79 -3.3 -5.08601 | opp_overlap 1037091 GCGGATCAAAAACAG CGTCG CGA CAACG TTTTTCTTCACCTCG TERM 530 1037634 - 1037658 + G 77 -10.7 -3.8211 | CGTCGCCCCGATCGC GATGCCGGGCA TCG TGTCAGGCATC TTGTTGTCCATCGCG pstA1 1036999 - 1037925 + | phosphate ABC transporter transmembrane protein pknD 1039914 - 1037920 - | transmembrane serine/threonine-protein kinase D PKND (protein kinase D) (STPK D) pstS2 1041048 - 1039936 - | periplasmic phosphate-binding lipoprotein PSTS2 (PBP-2) (PSTS2) TERM 531 1040045 - 1039995 - G 73 -14.2 -3.17194 | gap 2, opp_overlap 1039999, overlap 1039999 ATTTGGGCAACGGAA TG-GAGCCG-TATTGGTCCAGGCC TTCTT GGCCTGGACCAATCGCGGCTTGCA TAAACGCCCTTACCG TERM 532 1040040 - 1039999 - G 93 -19.6 -2.57013 | gap 1, opp_overlap 1039999, overlap 1039995 GGGCAACGGAATGGA GCCG-TATTGGTCCAGGCC TTCTT GGCCTGGACCAATCGCGGC TTGCATAAACGCCCT TERM 533 1039999 - 1040040 + g 100 -21.8 -3.05463 | gap 1, opp_overlap 1039999 1039995 GGGCAACGGAATGGA GCCGT-ATTGGTCCAGGCC TTCTT GGCCTGGACCAATCGCGGC TTGCATAAACGCCCT TERM 534 1040861 - 1040872 + g 74 -2.2 -4.78237 | TAGGCATAGACGAAC TGCT CCAT GGCA TTTTCTTGTGCGGTC TERM 535 1041933 - 1041965 + G 70 -10.6 -3.61398 | overlap 1041935 ACCCATAACCTTGCC CA-GGCCGCCCGCATC AGC GAC-CGGGCGGCCCTG TTCTTCGACGGCAGG pstB 1041264 - 1042094 + | phosphate ABC transporter ATP-binding protein pstS1 1042115 - 1043239 + | periplasmic phosphate-binding lipoprotein PSTS1 (PBP-1) (PSTS1) pstC1 1043299 - 1044315 + | phosphate ABC transporter transmembrane protein pstA2 1044317 - 1045222 + | phosphate ABC transporter transmembrane protein Rv0937c 1046020 - 1045199 - | hypothetical protein TERM 536 1047400 - 1047346 - g 71 -14.2 -2.80816 | overlap 1047353 CCGGCACTTACGACA CCGAGAAGTTCCACGATGACCCGCAC ACG GGGGAGGTCATCGTGAATCTGCACGG CGGCCGGATCTCTGG Rv0938 1046136 - 1048415 + | ATP-dependent DNA ligase TERM 537 1049385 - 1049404 + G 70 -10.7 -3.53224 | GGCGCGGGGTCAACC CGGCACC GACGCG GGTGCCG TTTACCCGCGGGCTG Rv0939 1048412 - 1050346 + | bifunctional 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase/cyclase/dehydrase Rv0940c 1051459 - 1050593 - | oxidoreductase Rv0941c 1052317 - 1051544 - | hypothetical protein TERM 538 1051928 - 1051963 + g 100 -11.1 -4.66609 | gap 1, opp_overlap 1051926 1051927 CGAACGCTTGAAATT GCGGCGCGCGA-GCCG ACCGA TGGCCTTGCTCGCCGC TTTTTCGGTCGGGTA Rv0942 1052360 - 1052638 + | hypothetical protein Rv0943c 1053736 - 1052696 - | monooxygenase Rv0944 1053765 - 1054241 + | formamidopyrimidine-DNA glycosylase Rv0945 1054247 - 1055008 + | short chain dehydrogenase pgi 1056685 - 1055024 - | glucose-6-phosphate isomerase TERM 539 1055479 - 1055465 - G 70 -10 -3.72893 | overlap 1055475 1055476 GAGGGGTTGAGCAAA GCCGAT GAA ATCGGC TGGCACCAGCCGGGT TERM 540 1055910 - 1055895 - G 73 -4 -4.67234 | gap 1, opp_overlap 1055895 ACCCAATCCCAAAAA CCGAACA TGT TGT-CGG TGTTGATGCCGAAGT TERM 541 1055981 - 1055964 - G 79 -8.3 -4.39426 | overlap 1055965 GACACCGCGACAAAA TGCCGCG ACAC CGCGGCG TCGCCCAGCGCATCG TERM 542 1056758 - 1056772 + r 74 -9.2 -3.89055 | overlap 1056770 TTTAGTTATCGTGCT CGGCGG CAC TCGCCG TTTGTCGCGGTATCT TERM 543 1057283 - 1057255 - R 91 -16.1 -3.66784 | CCAGTTGGAATAGAA CTCGCCATGCC ACCGGTG GGCATGGCGAG CGACAGACCGGTCTG Rv0948c 1057963 - 1057646 - | hypothetical protein TERM 544 1058022 - 1057990 - H 74 -14.2 -2.53249 | gap 1, overlap 1057989 1057987 1057985 1057992 CCTCACACAAGAGAC GAGCCCCG-AATCCG GAAG CGGACCACGGGGCTC TGCGAAAGCAGCTAG TERM 545 1058100 - 1058073 - H 74 -2.6 -4.84359 | gap 1 GTACCCGTAGAAAAA TCGGCGC-TGCGC GTT GAGCACGAACCGA GTGTGCCATCAACGG uvrD1 1058260 - 1060575 + | ATP-dependent DNA helicase II UVRD1 Rv0950c 1061654 - 1060656 - | hypothetical protein sucC 1061964 - 1063127 + | succinyl-CoA synthetase subunit beta sucD 1063140 - 1064051 + | succinyl-CoA synthetase subunit alpha TERM 546 1064103 - 1064062 - T 100 -29.7 -2.79183 | gap 1, opp_overlap 1064062 1064069, overlap 1064069 TCTAGGGCGAGCAGA CGCATAAGCCCCCG-CACGC TCG GCGTGTCGGGGGCTTATGCG TCTGCTCGCCCTATA TERM 547 1064062 - 1064103 + T 100 -29.7 -2.79501 | gap 1, opp_overlap 1064062 1064069, overlap 1064069 TCTAGGGCGAGCAGA CGCATAAGCCCCCG-CACGC TCG GCGTGTCGGGGGCTTATGCG TCTGCTCGCCCTATA TERM 548 1064069 - 1064096 + T 95 -19.2 -3.40299 | gap 1, opp_overlap 1064062 1064069, overlap 1064062 CGAGCAGACGCATAA GCCCCCG-CACGC TCG GCGTGTCGGGGGC TTATGCGTCTGCTCG TERM 549 1064096 - 1064069 - T 95 -19.2 -3.40299 | gap 1, opp_overlap 1064069 1064062, overlap 1064062 CGAGCAGACGCATAA GCCCCCG-CACGC TCG GCGTGTCGGGGGC TTATGCGTCTGCTCG Rv0953c 1064962 - 1064114 - | oxidoreductase TERM 550 1066027 - 1065990 - g 70 -10.5 -3.71794 | gap 1 AGTCAACTATTCAAA CCCCAGCGGGGG-CGA GCAGTCG TCGTCCCCCGGGGGGG CGCCGGTCTAACCGG Rv0954 1065127 - 1066038 + | transmembrane protein TERM 551 1066976 - 1067022 + G 85 -9.9 -4.17556 | gap 1 TCATTGTGGGTGCTT CGTC-GGGTGTGGCGGTCGGTC AGCA GTGCGCCCGCCGCGCCCTGCCG TTTGTTGCGGCTATG Rv0955 1066078 - 1067445 + | integral membrane protein TERM 552 1067662 - 1067690 + G 100 -24.7 -3.2794 | ACTCGATGCCGCTGT CGGCGACTACCCG GCA CGGGTAGTCGCCG TTGGTGTGGATCGCG purN 1067561 - 1068208 + | phosphoribosylglycinamide formyltransferase purH 1068205 - 1069776 + | bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase TERM 553 1070334 - 1070310 - g 74 -15.7 -2.62616 | overlap 1070290 CCACCCCCGACACCA GCGTCGCCGAC CTG GTCGGCGACGT CGACCCGATCAAGGT TERM 554 1070833 - 1070814 - g 72 -11.4 -3.54424 | gap 1, opp_overlap 1070826 TCGCAGCGGCCGAAA CCGTGGCGG CTG CCGCC-CGG CACCGCGGGGCGGTG Rv0958 1069883 - 1071262 + | magnesium chelatase Rv0959 1071255 - 1073273 + | hypothetical protein TERM 555 1073451 - 1073468 + F 70 -9.8 -3.63569 | CCGAGGCTTCTCGCC GCGCCG ACAATC CGGCGC TTCTTGGGGACTTGC Rv0960 1073545 - 1073928 + | hypothetical protein Rv0961 1074074 - 1074421 + | integral membrane protein lprP 1075114 - 1074440 - | lipoprotein LprP TERM 556 1074968 - 1074981 + g 75 -6.7 -4.37092 | TGTCTCAAGATCGGG TCGTC CGTT GACGA TTTTCTGCCGGCGGT Rv0963c 1076097 - 1075297 - | hypothetical protein Rv0964c 1076678 - 1076196 - | hypothetical protein Rv0965c 1077197 - 1076778 - | hypothetical protein TERM 557 1076848 - 1076831 - G 83 -14.1 -3.85698 | opp_overlap 1076830 1076829 CGCCTGTTGGATAAA CCGCGGC CAGT GCCGCGG CGTTGTGTTCCTCCA Rv0966c 1077835 - 1077233 - | hypothetical protein TERM 558 1078011 - 1078001 - g 70 -8.2 -3.94188 | opp_overlap 1078006, overlap 1078002 ATTGACCGCAAAGAA GCGC GCG GCGC TGAACCGGCTGAAGA Rv0967 1077975 - 1078334 + | hypothetical protein TERM 559 1078339 - 1078353 + F 74 -9.2 -3.85698 | GCAACATGTGACGAG CGCCGG ACT CCGGTG TTTCTCGGGACAACG Rv0968 1078391 - 1078687 + | hypothetical protein TERM 560 1080163 - 1080127 - g 72 -13 -3.21276 | gap 1, opp_overlap 1080127, overlap 1080125 1080128 TGGTGTTCGACAAGA CCGG-CACCCTCACCCG CGCC CGGATGCGGGTGACCGA TGTGATTGCCGGCCA ctpV 1078743 - 1081055 + | metal cation transporter P-type ATPase CtpV TERM 561 1081220 - 1081252 + G 90 -6.2 -5.1356 | gap 1, overlap 1081223 1081224 ATGGCCTGGCCGTGG GGCGCGCGGGTTCCG ACGA CGGGACCTGCG-GTA TTTTTCTTGCTGGCG TERM 562 1081223 - 1081250 + G 89 -11.2 -4.19587 | overlap 1081220 1081224 GCCTGGCCGTGGGGC GCGCGGGTTCCG ACGA CGGGACCTGCGG TATTTTTCTTGCTGG TERM 563 1081224 - 1081249 + G 76 -14.7 -3.10668 | overlap 1081223 1081220 CCTGGCCGTGGGGCG CGCGGGTTCCG ACGA CGGGACCTGCG GTATTTTTCTTGCTG Rv0970 1081052 - 1081684 + | integral membrane protein echA7 1082584 - 1081775 - | enoyl-CoA hydratase fadE12 1083750 - 1082584 - | acyl-CoA dehydrogenase FADE12 TERM 564 1083614 - 1083596 - G 79 -3.1 -5.03314 | TTCACCCCCAAAAAA CCGAG TTTGCCTGC CTCGG CCCATAACTCGCTGG accA2 1085750 - 1083747 - | acetyl-/propionyl-coenzyme A carboxylase subunit alpha accD2 1087345 - 1085756 - | acetyl-/propionyl-CoA carboxylase subunit beta fadE13 1088496 - 1087348 - | acyl-CoA dehydrogenase FADE13 Rv0976c 1090175 - 1088493 - | hypothetical protein TERM 565 1090488 - 1090534 + G 83 -12.3 -4.11216 | gap 2, opp_overlap 1090482, overlap 1090477 1090482 1090490 TCCGAACGACGGCGT TGGCGCC-CG-CCGCCGCCGA CGAGGTT TCGGCGGCGATCGCGGCGCTG TTTTCCAGCTACGCG TERM 566 1090490 - 1090532 + G 83 -14.9 -3.65542 | gap 2, opp_overlap 1090482, overlap 1090477 1090482 1090488 CGAACGACGGCGTTG GCGCC-CG-CCGCCGCCGA CGAGGTT TCGGCGGCGATCGCGGCGC TGTTTTCCAGCTACG TERM 567 1091990 - 1092040 + G 71 -12.2 -3.32844 | GGTCGCGGGGGGGAC TCGGGCCGCGGCGGCGACGGCGGC AAC GCCGGCCACGGCGGCGCCGCCCAA TTCTCCGGTCGCGGC TERM 568 1092105 - 1092147 + G 70 -11 -3.53012 | overlap 1092106 GCGGCAACGCCGGTG GCGCCGGCACCGGTGGCACC GCG GGCTCCGGCGGTGCCGGAGG TTTCGGCGGCAACGG TERM 569 1092106 - 1092146 + G 72 -14.5 -2.71712 | overlap 1092105 CGGCAACGCCGGTGG CGCCGGCACCGGTGGCACC GCG GGCTCCGGCGGTGCCGGAG GTTTCGGCGGCAACG TERM 570 1092251 - 1092235 - g 73 -13.7 -3.14344 | overlap 1092217 CACGTTCGGCACCAA CGGTGCC GGC GGCACCG GCGGGCTCGGCACCC TERM 571 1092361 - 1092391 + G 93 -19.2 -2.70932 | opp_overlap 1092369, overlap 1092363 1092367 CGTACCGCTGCAGCT GGTGAATACCACCG AGC CGGTGGTATTCATC TCCTTAAACGGCGGC TERM 572 1092363 - 1092389 + G 86 -18.2 -2.90075 | opp_overlap 1092369, overlap 1092361 1092367 TACCGCTGCAGCTGG TGAATACCACCG AGC CGGTGGTATTCA TCTCCTTAAACGGCG TERM 573 1092367 - 1092385 + G 73 -13.2 -3.32647 | opp_overlap 1092369, overlap 1092363 1092361 GCTGCAGCTGGTGAA TACCACCG AGC CGGTGGTA TTCATCTCCTTAAAC PE_PGRS16 1090373 - 1093144 + | PE-PGRS family protein PE_PGRS17 1094356 - 1093361 - | PE-PGRS family protein TERM 574 1093475 - 1093511 + g 89 -18.1 -3.26947 | overlap 1093477 GATGGGGGAGCCGGT GACGGTGTTGGTGGTCG GGT CGATCACCGACACCGTG TTGCTGTCGAAGTTG TERM 575 1093477 - 1093509 + g 100 -20.7 -3.1978 | overlap 1093475 TGGGGGAGCCGGTGA CGGTGTTGGTGGTCG GGT CGATCACCGACACCG TGTTGCTGTCGAAGT TERM 576 1094236 - 1094277 + g 72 -12.9 -3.13403 | overlap 1094227 1094234 CCTCGTCTTGGGCGG CGGCCAACACCTGGGTGGT CGCC GCCGCCGCGGTGTTGGCGG TGTTGATCGCCGAGC Rv0979c 1094864 - 1094670 - | hypothetical protein TERM 577 1094755 - 1094793 + g 72 -14.4 -3.02829 | opp_overlap 1094739 1094749 GTGAACTGACGGTCA CGCCCGGGCCCAACCCCG GCC CGGAATTGGGCCGGGCCG TCTTCAACCGGTATC rpmF 1094886 - 1095059 + | 50S ribosomal protein L32 PE_PGRS18 1096451 - 1095078 - | PE-PGRS family protein TERM 578 1095228 - 1095264 + g 73 -13.7 -3.17688 | overlap 1095230 1095249 GATGGGGGAGCCGGT GACGGTGTTGGTGGCCG GGT CGATCACCGACACCGTG TTGCTGAACTGGTTG TERM 579 1095230 - 1095262 + g 81 -16.3 -3.1478 | overlap 1095228 1095249 TGGGGGAGCCGGTGA CGGTGTTGGTGGCCG GGT CGATCACCGACACCG TGTTGCTGAACTGGT TERM 580 1095351 - 1095387 + g 80 -15.9 -3.26947 | overlap 1095321 1095320 1095323 1095353 GGGGATGGAGCCGGT GACGGTGTTGGTGTTCG GGT CGATCACCGACACCGTG TTGCTGTCGAAGTTG TERM 581 1095353 - 1095385 + g 90 -18.5 -3.1978 | overlap 1095321 1095320 1095323 1095351 GGATGGAGCCGGTGA CGGTGTTGGTGTTCG GGT CGATCACCGACACCG TGTTGCTGTCGAAGT TERM 582 1095477 - 1095513 + g 78 -15.9 -3.17688 | overlap 1095451 1095479 GGTGATGGAGCCGGT GACGGTGTTGGTGACCG GGT CGATCACCGACACCGTG TTGCTGCCCTGGTTG TERM 583 1095479 - 1095511 + g 90 -18.5 -3.1478 | overlap 1095451 1095477 TGATGGAGCCGGTGA CGGTGTTGGTGACCG GGT CGATCACCGACACCG TGTTGCTGCCCTGGT TERM 584 1096321 - 1096363 + g 72 -14.1 -3.06315 | gap 1, overlap 1096329 1096331 GCCGTTGACACCTCG TCGTGGGCGGCGGCCAACAC CTGG GTGGTCGCCGCCGC-CGCGG TGTTGGCGGTGTTGA TERM 585 1096331 - 1096372 + g 72 -12.9 -3.13403 | overlap 1096321 1096329 CCTCGTCGTGGGCGG CGGCCAACACCTGGGTGGT CGCC GCCGCCGCGGTGTTGGCGG TGTTGATCGCCGAGC mprA 1096816 - 1097508 + | two component response transcriptional regulatory protein MprA mprB 1097508 - 1099022 + | two component sensor kinase MprB pepD 1099066 - 1100460 + | serine protease PepD moaB2 1100460 - 1101005 + | pterin-4-alpha-carbinolamine dehydratase MoaB2 mscL 1101480 - 1101025 - | large-conductance mechanosensitive channel TERM 586 1101265 - 1101247 - G 77 -3.9 -4.77036 | gap 1 CGCGATCAGGAAAAA GTTGATCG CTGC CGA-CAAC AAGACGTTCAAGTCA TERM 587 1102069 - 1102035 - g 70 -4.2 -4.43844 | gap 1, opp_overlap 1102015 CTATCACTCAGAAAA CCGAGCGAGACCGGA CGTTGT TCCGG-CGCGATCAG ATTGGCATCGTCTTT TERM 588 1102216 - 1102202 - g 74 -5.6 -4.57073 | GACCTTCTCGAAAAA GTGGGC ATG GCCGAC CGTGAACGCACCTTT Rv0986 1101803 - 1102549 + | adhesion component transport ATP-binding protein ABC transporter TERM 589 1102596 - 1102613 + G 74 -10.5 -3.77846 | CGCACGGCGTGGCGT CGGCTGC GTCA GCGGCCG TTTCAATATATTCTG TERM 590 1103820 - 1103840 + G 73 -9.7 -3.98204 | overlap 1103809 1103817 ATGCTGTGGTTGCCG GGCAACAAC CTG GTTGTGGCC TTTGTCGGTCTCTTT TERM 591 1104466 - 1104477 + G 70 -3.6 -4.55287 | overlap 1104448 GGCCACAAACGTTCC CCGT TCTG GCGG TTTTCTCTGACTACA TERM 592 1104738 - 1104751 + G 81 -8.1 -4.66318 | GCGTTGCAACTGGTG GCCAC GGTG GTGGC TTTTATTGGCGTACT Rv0987 1102542 - 1105109 + | adhesion component transport transmembrane protein ABC transporter Rv0988 1105116 - 1106276 + | hypothetical protein grcC2 1107382 - 1106405 - | polyprenyl-diphosphate synthase Rv0990c 1108099 - 1107443 - | hypothetical protein TERM 593 1107820 - 1107865 + g 70 -2.3 -4.58395 | gap 1 TCGAACCCACCACTG CGTCCAGGTCAGCTTGCGACCC GTC GGGAAGCGTGGTGGCC-GAACG TTTTTCCAGCCTGAC Rv0991c 1108504 - 1108172 - | putative serine rich protein Rv0992c 1109171 - 1108578 - | hypothetical protein galU 1109272 - 1110192 + | UTP--glucose-1-phosphate uridylyltransferase GalU moeA1 1110269 - 1111549 + | molybdopterin biosynthesis protein MoeA1 rimJ 1111612 - 1112223 + | ribosomal-protein-alanine acetyltransferase Rv0996 1112384 - 1113460 + | transmembrane protein TERM 594 1113939 - 1113951 + F 79 -9.1 -4.11394 | opp_overlap 1113938 GCCATTCCACACGAT GGCGA CTA TCGCC TTTTCCAGGTCGACT TERM 595 1114431 - 1114409 - g 76 -6.2 -4.56978 | CGCCGAAACAACAAA CAGCATCGAA TGT TTCGTCGCCG AATGGCACCATGCGG Rv0997 1114293 - 1114724 + | hypothetical protein TERM 596 1115048 - 1115016 - g 83 -15.6 -3.53444 | gap 1, opp_overlap 1115043 TGATCGTCGGCGAAA TCGCGCTGCTGCGCG ATAG CCCGC-GCAGCGCGA CGGTCACCACCATCG Rv0998 1114748 - 1115749 + | hypothetical protein Rv0999 1115767 - 1116525 + | hypothetical protein Rv1000c 1117148 - 1116531 - | hypothetical protein TERM 597 1116872 - 1116906 + g 72 -13.5 -3.10796 | AGATGTCGTTGAGCC GCCGGCGCATCCGCG CCAGC TGCGGATGCGGCGGA TCTTCGATGGTCAGG arcA 1117185 - 1118393 + | arginine deiminase Rv1002c 1119939 - 1118428 - | hypothetical protein TERM 598 1118818 - 1118762 - G 73 -13 -3.3353 | overlap 1118758 CGGCGCACAAACATA CGCCAC-CCCGCGTATGCCAGGACTGGC ACC GCCAGCCACCACAT-CGCGGGCGTGCCG ACCAGCATCTCGGCC TERM 599 1120444 - 1120502 + G 77 -5.8 -4.65916 | gap 1, overlap 1120452 1120453 GGGTTTCGCCCCGCG CAAGGGTGCGGCGCGCC-GGGCCTG GCTGGCCGAA CTGGCCGAGGAGCGGCGCACCTGTG TTTTCTTCGAATCCC TERM 600 1120453 - 1120498 + G 70 -11 -3.55261 | gap 1, overlap 1120452 1120444 CCCGCGCAAGGGTGC GGCGCGCCGGGCCT-GGCTGG CCGAA CTGGCCGAGGAGCGGCGCACC TGTGTTTTCTTCGAA Rv1003 1120022 - 1120879 + | hypothetical protein Rv1004c 1122148 - 1120889 - | hypothetical protein TERM 601 1121916 - 1121873 - G 73 -13 -3.33696 | gap 1, opp_overlap 1121905 CGGCCGCGGAACCAA TCCCGGCG-CGATCGTGTCGG CGA CCGGCTCGAACGGCGCCGGCA CCGCGTGCTCCGCTG pabB 1123598 - 1122222 - | para-aminobenzoate synthase component I TERM 602 1125161 - 1125143 - g 74 -14.6 -3.05844 | CGGTGGACCTGAAGA CGCTGGTC TCC GACCAGCG CGGCGATCGCAGCAG Rv1006 1123714 - 1125417 + | hypothetical protein metG 1127003 - 1125444 - | methionyl-tRNA synthetase TERM 603 1126200 - 1126182 - G 79 -4.4 -4.8048 | overlap 1126183 1126196 GGCTGACATCAAAAA CGCCGGCC AAT AGACGGCA TGAAACCTGATGATG tatD 1127089 - 1127883 + | deoxyribonuclease TatD (YjjV protein) TERM 604 1127965 - 1127991 + F 82 -5.8 -4.86293 | TTGTGATCGAACGGG TGGGGCCTCT AGGTTTC GGAGGGCCCA TTTTGCTTTTTGTTC rpfB 1128091 - 1129179 + | resuscitation-promoting factor rpfB ksgA 1129152 - 1130105 + | dimethyladenosine transferase ispE 1130191 - 1131111 + | 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase Rv1012 1131128 - 1131421 + | hypothetical protein pks16 1131625 - 1133259 + | acyl-CoA synthetase TERM 605 1133315 - 1133274 - T 90 -20.3 -2.78463 | opp_overlap 1133274 1133281, overlap 1133281 AGGCCGCCGAGCAGA CGCAAAATCCCCTCGACAC GCCG GTTGCGAGGGGATTTTGCG TCTGCTCACGCGGGT TERM 606 1133274 - 1133315 + T 90 -20.3 -2.78463 | opp_overlap 1133274 1133281, overlap 1133281 AGGCCGCCGAGCAGA CGCAAAATCCCCTCGACAC GCCG GTTGCGAGGGGATTTTGCG TCTGCTCACGCGGGT TERM 607 1133308 - 1133281 - T 85 -9.8 -4.24948 | opp_overlap 1133274 1133281, overlap 1133274 CGAGCAGACGCAAAA TCCCCTCGACAC GCCG GTTGCGAGGGGA TTTTGCGTCTGCTCA TERM 608 1133281 - 1133308 + T 85 -9.8 -4.24948 | opp_overlap 1133281 1133274, overlap 1133274 CGAGCAGACGCAAAA TCCCCTCGACAC GCCG GTTGCGAGGGGA TTTTGCGTCTGCTCA pth 1133908 - 1133333 - | peptidyl-tRNA hydrolase TERM 609 1133494 - 1133465 - G 74 -7.8 -4.1891 | GTTCTCCAACACAAA CGC-CGCCGGGTCC TTGC GG-CCGGGCGGGCG GCCGATCCCGATACG rplY 1134568 - 1133921 - | 50S ribosomal protein L25/general stress protein Ctc lpqT 1135465 - 1134785 - | lipoprotein LpqT TERM 610 1135235 - 1135269 + g 78 -14.3 -3.59315 | gap 1 CAGGTCGGTCAGGCT GC-TCGGTGCCACCGG CTCT CCGGTGACGCCGACGC TTTCCAGATACTTCC prsA 1136481 - 1135501 - | ribose-phosphate pyrophosphokinase glmU 1138060 - 1136573 - | UDP-N-acetylglucosamine pyrophosphorylase glmU TERM 611 1138314 - 1138290 - H 82 -11.3 -4.08692 | overlap 1138279 1138278 TAAGGCGCCGGAAAA CCCGACGCGGG TGA CGCGCGCCAGG ATGACGGGGACCGAG Rv1019 1138315 - 1138908 + | TetR family transcriptional regulator mfd 1138967 - 1142671 + | transcription-repair coupling factor Mfd (TRCF) Rv1021 1142671 - 1143648 + | nucleoside triphosphate pyrophosphohydrolase TERM 612 1143795 - 1143823 + G 70 -6.1 -4.25104 | gap 2 GACCGCGATGCTGTT GGCGTCGAGCTGC ACTTG GCAGCT-GA-GCC TTTTCATCACCGACG lpqU 1143736 - 1144467 + | lipoprotein LpqU eno 1144564 - 1145853 + | phosphopyruvate hydratase TERM 613 1146077 - 1146122 + G 77 -13.1 -3.52896 | gap 1, opp_overlap 1146067 1146079 GAGAAGCGCTCCGAA CAGCGGCTGGGGTTCACCGCGC GGC GCGCAGCGATCCTC-GCCGCGG TTGTATGCGTGCTGA TERM 614 1146120 - 1146079 - g 79 -16.5 -3.02461 | gap 1, opp_overlap 1146077, overlap 1146067 GAAGCGCTCCGAACA GCGGCTGGGGTTCACCGCGC GGC GCGCAGCGATCCTC-GCCGC GGTTGTATGCGTGCT Rv1024 1145858 - 1146544 + | hypothetical protein Rv1025 1146561 - 1147028 + | hypothetical protein Rv1026 1147019 - 1147978 + | hypothetical protein kdpE 1149107 - 1148427 - | transcriptional regulatory protein KdpE kdpD 1151686 - 1149104 - | sensor protein KDPD kdpF 1151920 - 1152012 + | membrane protein kdpF TERM 615 1152136 - 1152122 - g 71 -2.7 -4.63527 | opp_overlap 1152121 1152123, overlap 1152123 CGACGAGGCCAAAAA GCCCG GCGAT CGGGT GTTTGGGCCGATCGA kdpA 1152012 - 1153727 + | potassium-transporting ATPase subunit A kdpB 1153724 - 1155853 + | potassium-transporting ATPase subunit B kdpC 1155853 - 1156422 + | potassium-transporting ATPase C chain KDPC (potassium-translocating ATPase C chain) (ATP phosphohydrolase [potassium-transporting] C chain) (potassium binding and translocating subunit C) trcS 1157955 - 1156426 - | two component sensor histidine kinase TRCS trcR 1158736 - 1157963 - | two component transcriptional regulator TRCR Rv1034c 1159307 - 1158918 - | transposase TERM 616 1159224 - 1159245 + g 81 -8.6 -4.56597 | GTCGGCGGTGACGGT GCGCGGCG TGCGTC CGGCGCGC TTTTTCACCCACGCC Rv1035c 1160061 - 1159375 - | transposase Rv1036c 1160433 - 1160095 - | truncated IS1560 transposase TERM 617 1160403 - 1160356 - G 77 -10.8 -3.8901 | gap 1, opp_overlap 1160361, overlap 1160358 1160359 1160361 GCCTAAAGTACGAAA CACGATGGCCTCAAT-CCCTT CCGCAAC AAGGGCATTGAGGCCATCTTC CCAGTTCAGCACCAT TERM 618 1160401 - 1160358 - G 77 -13.4 -3.52909 | gap 1, opp_overlap 1160361, overlap 1160356 1160359 1160361 CTAAAGTACGAAACA CGATGGCCTCAAT-CCCTT CCGCAAC AAGGGCATTGAGGCCATCT TCCCAGTTCAGCACC TERM 619 1160400 - 1160359 - G 80 -16.9 -2.71022 | gap 1, opp_overlap 1160361, overlap 1160358 1160356 1160361 TAAAGTACGAAACAC GATGGCCTCAAT-CCCTT CCGCAAC AAGGGCATTGAGGCCATC TTCCCAGTTCAGCAC TERM 620 1160361 - 1160398 + g 72 -13.7 -3.06261 | gap 1, opp_overlap 1160361 1160359 1160358 1160356 AAGTACGAAACACGA TGGCCTCAAT-CCCTT CCGCAAC AAGGGCATTGAGGCCA TCTTCCCAGTTCAGC TERM 621 1160398 - 1160361 - G 71 -13.7 -2.88617 | gap 1, opp_overlap 1160361, overlap 1160359 1160358 1160356 AAGTACGAAACACGA TGGCCTCAAT-CCCTT CCGCAAC AAGGGCATTGAGGCCA TCTTCCCAGTTCAGC TERM 622 1160477 - 1160514 + r 100 -24.3 -2.70932 | opp_overlap 1160477 1160480, overlap 1160480 TAGTCGTTCAGATAA CAACGTGGCCACACACC AACC GGTGTGCGGCCACGTTG TAATTGACGGCGCGG TERM 623 1160514 - 1160477 - R 100 -26.5 -3.48593 | opp_overlap 1160477 1160480, overlap 1160480 TAGTCGTTCAGATAA CAACGTGGCCACACACC AACC GGTGTGCGGCCACGTTG TAATTGACGGCGCGG TERM 624 1160480 - 1160511 + r 100 -20.2 -3.50853 | opp_overlap 1160477 1160480, overlap 1160477 TCGTTCAGATAACAA CGTGGCCACACACC AACC GGTGTGCGGCCACG TTGTAATTGACGGCG TERM 625 1160511 - 1160480 - R 100 -22.4 -3.88232 | opp_overlap 1160480 1160477, overlap 1160477 TCGTTCAGATAACAA CGTGGCCACACACC AACC GGTGTGCGGCCACG TTGTAATTGACGGCG esxI 1160828 - 1160544 - | putative ESAT-6 like protein ESXI (ESAT-6 like protein 1) esxJ 1161151 - 1160855 - | Esat-6 like protein esxJ (Esat-6 like protein 2) PPE15 1162472 - 1161297 - | PPE family protein TERM 626 1161913 - 1161952 + g 74 -15.6 -2.62184 | overlap 1161917 GTGGCGGCAGCCGAG CCGACCGCGGCGGACTGG GCGG CCAGCCCGCCCGGGTTGG TGGTCTGCGACGGCG PE8 1163376 - 1162549 - | PE family protein Rv1041c 1165435 - 1164572 - | IS like-2 transposase Rv1042c 1165499 - 1165092 - | IS like-2 transposase Rv1043c 1166806 - 1165781 - | hypothetical protein Rv1044 1167053 - 1167676 + | hypothetical protein Rv1045 1167673 - 1168554 + | hypothetical protein Rv1046c 1169228 - 1168704 - | hypothetical protein Rv1047 1169423 - 1170670 + | transposase Rv1048c 1172153 - 1171038 - | hypothetical protein TERM 627 1171449 - 1171439 - G 75 -6.8 -4.33928 | CAGTCGAAATAGAAA TCGG CGA CCGA AGCTTGTCTGCTGCC TERM 628 1171538 - 1171551 + g 95 -5.9 -5.40072 | overlap 1171521 1171539 CGCGGGCAGTGGCAC TGGCC AGAT GGCCG TTTTTTTCGAGAAAC TERM 629 1171674 - 1171721 + g 79 -11.8 -3.84825 | gap 1, opp_overlap 1171664 ACATACGGCAAGTGT GGCGCGGCGCCAGCCTATGCGCG CGT CGAGTG-GGGCAGGTGGCGCGCC TTTCGTCTCGATCAC Rv1049 1172386 - 1172832 + | transcriptional repressor protein Rv1050 1172881 - 1173786 + | oxidoreductase Rv1051c 1174700 - 1173945 - | hypothetical protein Rv1053c 1176286 - 1176011 - | hypothetical protein Rv1052 1175723 - 1176112 + | hypothetical protein Rv1054 1176928 - 1177242 + | integrase Rv1055 1177239 - 1177373 + | hypothetical protein Rv1056 1177628 - 1178392 + | hypothetical protein TERM 630 1179594 - 1179563 - g 83 -15.2 -3.73647 | gap 1 GGTAGTGACCAACAA CGGCACCGAC-ACCG TCT CGGTCGTCGGCACCG ACACCTGCCGGGTCA Rv1057 1179396 - 1180577 + | hypothetical protein TERM 631 1180593 - 1180604 + F 70 -7.2 -3.99806 | CTCGAACGCGCTTCT CGGG GGAA CCCG TTTCTCATGACTTCT fadD14 1180684 - 1182315 + | acyl-CoA synthetase TERM 632 1182330 - 1182371 + F 72 -13.9 -2.78816 | gap 1, opp_overlap 1182330 1182337 1182338, overlap 1182338 1182339 ACCCGCGCGAGCAGA CGCAAAATCGCCCATTTTCG TGT CGAAA-TGGGGGCTTTTGCG TCTGCTCGCGGGTAG TERM 633 1182371 - 1182330 - f 72 -13.9 -2.78463 | gap 1, opp_overlap 1182330 1182338 1182339, overlap 1182337 1182338 ACCCGCGCGAGCAGA CGCAAAATCGCCCATTTTCG TGT CGAAA-TGGGGGCTTTTGCG TCTGCTCGCGGGTAG Rv1059 1182391 - 1183455 + | hypothetical protein TERM 634 1183577 - 1183601 + G 74 -7.7 -4.1711 | overlap 1183578 1183580 GATGCGTTCGGTGGC ACGCTGGCGGC AGC GCTGCCGGTGA TTTGTTCGCACTGGT Rv1060 1183508 - 1183981 + | hypothetical protein Rv1061 1184015 - 1184878 + | hypothetical protein TERM 635 1185609 - 1185631 + G 70 -11.2 -3.53012 | overlap 1185607 GTGTTTGCCGTGTTC GCCGACGACG ACT CGTTGGCGGC TTTCGGGCCCAACCC Rv1062 1184883 - 1185740 + | hypothetical protein Rv1063c 1186823 - 1185741 - | hypothetical protein lpqV 1187323 - 1186904 - | lipoprotein LpqV Rv1065 1187435 - 1188001 + | hypothetical protein Rv1066 1187998 - 1188393 + | hypothetical protein PE_PGRS19 1190424 - 1188421 - | PE-PGRS family protein TERM 636 1189257 - 1189306 + g 100 -19.2 -3.07816 | opp_overlap 1189250 CCACGACATGTTCGC CGCCGGCGC-CGGCGGCCGCGCCG TTGC CGCCGGCGCCGCCGTGC-CCGGCG TTACCTCCGTGACCG TERM 637 1190310 - 1190263 - G 78 -10.4 -4.07568 | gap 1, overlap 1190265 1190266 GGCGTGGGCGGAAAA CAGTGCCGCGACCGCCGCGGACA CCT CATCGGCACCGGCCGCGGC-CAG CACCGACGTCGGGGC TERM 638 1190308 - 1190265 - G 75 -11.6 -3.63744 | gap 1, overlap 1190263 1190266 CGTGGGCGGAAAACA GTGCCGCGACCGCCGCGGACA CCT CATCGGCACCGGCCGCGGC-C AGCACCGACGTCGGG PE_PGRS20 1192148 - 1190757 - | PE-PGRS family protein Rv1069c 1194273 - 1192510 - | hypothetical protein echA8 1195043 - 1194270 - | enoyl-CoA hydratase echA9 1196092 - 1195055 - | enoyl-CoA hydratase TERM 639 1195204 - 1195166 - G 72 -13.1 -3.14211 | ATCCTTGTCGATCAA CTGCGCGCGGATGCCCT CCACC AGGTCATGCGAGCGCAG CGACGCCGATGACAC Rv1072 1196279 - 1197115 + | transmembrane protein TERM 640 1197922 - 1197895 - g 74 -15.6 -2.66634 | overlap 1197892 GATGGGAGGACATCA TGCTCGCGGTCG AGTA CGACGGCGAGCA ACACCGTCTCAGCCG Rv1073 1197231 - 1198082 + | hypothetical protein TERM 641 1198177 - 1198138 - T 86 -16.4 -3.1355 | overlap 1198142 TGGACGCAGAGTCAA CGCACTCGAGCGCCTCGC TCAC GCGAGGCGCTCGATCACC ATCGCCATGCCCTGG TERM 642 1198173 - 1198142 - T 90 -20.2 -2.56095 | overlap 1198138 CGCAGAGTCAACGCA CTCGAGCGCCTCGC TCAC GCGAGGCGCTCGAT CACCATCGCCATGCC fadA3 1199373 - 1198156 - | acetyl-CoA acetyltransferase Rv1075c 1200370 - 1199426 - | hypothetical protein TERM 643 1200521 - 1200545 + H 70 -12.1 -3.1739 | overlap 1200522 GCTAAGTTCGCGGGG TTGGCTGAGCC AGA GGCTCAGCCGC TTCGTCACATGCTGT TERM 644 1200522 - 1200544 + H 76 -15.6 -2.50113 | overlap 1200521 CTAAGTTCGCGGGGT TGGCTGAGCC AGA GGCTCAGCCG CTTCGTCACATGCTG TERM 645 1200956 - 1200985 + G 84 -13.5 -3.91144 | overlap 1200920 GCGGACGGCACTCGA CGCGCCGTCCTGT ACCT GCACGGCGGCGCG TTTCTGACGTGTGGA lipU 1200767 - 1201660 + | lipase LipU cbs 1201717 - 1203111 + | cystathionine beta-synthase CBS (Serine sulfhydrase) (Beta-thionase) (hemoprotein H-450) pra 1203313 - 1204035 + | proline-rich antigen metB 1204067 - 1205233 + | cystathionine gamma-synthase greA 1205798 - 1205304 - | transcription elongation factor GreA Rv1081c 1206418 - 1205984 - | hypothetical protein TERM 646 1206963 - 1206993 + G 70 -6 -4.17089 | overlap 1206964 1206986 TCGCTGCCATCAGGT TTCGGTGGCTGCCT ACG AGGCGGCCGGTGAC TTTTGCCGGTTTCCC TERM 647 1207020 - 1207056 + G 76 -15.1 -3.14132 | TCCCGACGCGGGTGA GCCGTGGACGGTGTCCA AGC TGTACTACGTCCACGGC TTCCTGCGGGAGCGG mca 1206520 - 1207386 + | Mycothiol conjugate amidase Mca (Mycothiol S-conjugate amidase) TERM 648 1207417 - 1207441 + G 70 -11.3 -3.53444 | overlap 1207418 GCGTGATTGCTGAGG GCGGGCCCGGT AAC ACCGGACCCGA TTTCGGGAAGGCTAG TERM 649 1207418 - 1207440 + G 72 -14.8 -2.71924 | overlap 1207417 CGTGATTGCTGAGGG CGGGCCCGGT AAC ACCGGACCCG ATTTCGGGAAGGCTA Rv1083 1207383 - 1207649 + | hypothetical protein Rv1084 1207636 - 1209657 + | hypothetical protein Rv1085c 1210484 - 1209756 - | hemolysin-like protein Rv1086 1210595 - 1211383 + | short (C15) chain Z-isoprenyl diphosphate synthase (Z-FPP synthase) (Z-farnesyl diphosphate synthase) (Z-FPP synthetase) (Z-farnesyl diphosphate synthetase) (geranyltranstransferase) (farnesyl pyrophosphate synthetase) TERM 650 1211887 - 1211905 + G 72 -4.4 -4.56597 | opp_overlap 1211889, overlap 1211888 1211889 CTGTTGGCCGCGATC AACGCTCG CTT CGAGCGGA TTTTTGGGCGCCCGC TERM 651 1212184 - 1212237 + G 100 -21.5 -3.28712 | GTAGCGCCCGGCGTG CCCGGCGGCGCCGGCGGTGCCGGCG GCGC CGGCGGTGTCGGCGGACCCGCCGGG TTGTGGGGCCACGGG TERM 652 1212741 - 1212757 + G 71 -15.1 -2.55565 | overlap 1212740 1212742 1212744 TACCGGCGGTCAGGG CGGCGCC GGC GGCGCCG GTGTATTTAGCCTAT TERM 653 1212744 - 1212760 + G 70 -11.5 -3.41302 | overlap 1212741 1212740 1212742 CGGCGGTCAGGGCGG CGCCGGC GGC GCCGGTG TATTTAGCCTATTCG TERM 654 1213184 - 1213222 + G 79 -16.7 -3.01924 | gap 1 GCAGCGGCTCGGTCG GCATCGGCGGTGCCGGTG GTGC CGGCGGCACCGCCGG-GC TGTTCGGCGACGGTG PE_PGRS21 1211560 - 1213863 + | PE-PGRS family protein Rv1087A 1214040 - 1214360 + | hypothetical protein PE9 1214513 - 1214947 + | PE family protein PE10 1214769 - 1215131 + | PE family protein celA2a 1215517 - 1215621 + | endo-1,4-beta-glucanase celA2b 1215599 - 1216054 + | endo-1,4-beta-glucanase TERM 655 1216536 - 1216582 + G 86 -16.5 -3.61517 | gap 1 TGGCGGGCATTGGGT CGGCGCTGGCGGAGGCCAACGC CGCG GCGTTGGCC-CCGACGACGGCG TTGTTGGCCGCGGGT TERM 656 1217276 - 1217296 + G 77 -12.5 -3.67864 | GGCAACGGCGGCAAG GGCGGTGCT GGC GGCGCCGCC TTTAGCATTAACTTC TERM 657 1218271 - 1218299 + G 72 -13.7 -3.04144 | CGGCGGGACCGGTGG GTCCGGCGGGGCC GGT GGCAACGCCGGGC TGTTGGGCGTGGGCG TERM 658 1218938 - 1218992 + G 74 -14.9 -3.01712 | gap 2, opp_overlap 1218923, overlap 1218941 GGCGCGGGCGGCACC GGGGGCACCCCGGGGCCCGGCGGACCC GGC GGGTCCGGCGGGCTT-GGAG-GCCTGC TGTTCGGCCAAACCG TERM 659 1218941 - 1218989 + G 80 -17.4 -2.73875 | gap 2, opp_overlap 1218923, overlap 1218938 GCGGGCGGCACCGGG GGCACCCCGGGGCCCGGCGGACCC GGC GGGTCCGGCGGGCTT-GGAG-GCC TGCTGTTCGGCCAAA PE_PGRS22 1216469 - 1219030 + | PE-PGRS family protein coaA 1220186 - 1219248 - | pantothenate kinase TERM 660 1219544 - 1219531 - G 77 -3.1 -4.9755 | overlap 1219536 ACATACAACGAAAAA TCGAA CAGA TCCGA CACCATGAGCGTGGG TERM 661 1219921 - 1219935 + g 71 -2.7 -4.64676 | opp_overlap 1219917 1219918, overlap 1219917 1219922 CCGATGATGAACGGC ACCGG CCGGT CCGGG TTTTGTTGGGGCTCG glyA 1220574 - 1221854 + | serine hydroxymethyltransferase desA2 1221959 - 1222786 + | acyl-[acyl-carrier protein] desaturase phoH2 1222997 - 1224298 + | PhoH-like protein PhoH2 (phosphate starvation-inducible protein PsiH) TERM 662 1224317 - 1224362 + F 100 -31.5 -2.72344 | gap 1, opp_overlap 1224319 1224321 1224323 1224326, overlap 1224319 1224321 1224323 1224326 1224360 CGCCTCCCGCGAGCA GACACAGAATCGCACTGCGCCG GCC CGGCGC-GTGCGATTCTGTGTC TGCTTGCCGGTAGAC TERM 663 1224319 - 1224360 + F 100 -28.3 -2.90723 | gap 1, opp_overlap 1224319 1224321 1224323 1224326, overlap 1224317 1224321 1224323 1224326 CCTCCCGCGAGCAGA CACAGAATCGCACTGCGCCG GCC CGGCGC-GTGCGATTCTGTG TCTGCTTGCCGGTAG TERM 664 1224360 - 1224319 - f 100 -28.3 -2.78384 | gap 1, opp_overlap 1224317 1224319 1224321 1224323 1224326, overlap 1224321 1224323 1224326 CCTCCCGCGAGCAGA CACAGAATCGCACTGCGCCG GCC CGGCGC-GTGCGATTCTGTG TCTGCTTGCCGGTAG TERM 665 1224358 - 1224321 - f 100 -25.1 -2.94099 | gap 1, opp_overlap 1224319 1224317 1224321 1224323 1224326, overlap 1224319 1224323 1224326 TCCCGCGAGCAGACA CAGAATCGCACTGCGCCG GCC CGGCGC-GTGCGATTCTG TGTCTGCTTGCCGGT TERM 666 1224321 - 1224358 + F 100 -25.1 -3.00476 | gap 1, opp_overlap 1224321 1224319 1224323 1224326, overlap 1224319 1224317 1224323 1224326 TCCCGCGAGCAGACA CAGAATCGCACTGCGCCG GCC CGGCGC-GTGCGATTCTG TGTCTGCTTGCCGGT TERM 667 1224323 - 1224356 + F 100 -21.9 -3.05647 | gap 1, opp_overlap 1224323 1224321 1224319 1224326, overlap 1224321 1224319 1224317 1224326 CCGCGAGCAGACACA GAATCGCACTGCGCCG GCC CGGCGC-GTGCGATTC TGTGTCTGCTTGCCG TERM 668 1224356 - 1224323 - f 100 -21.9 -3.02471 | gap 1, opp_overlap 1224321 1224319 1224317 1224323 1224326, overlap 1224321 1224319 1224326 CCGCGAGCAGACACA GAATCGCACTGCGCCG GCC CGGCGC-GTGCGATTC TGTGTCTGCTTGCCG TERM 669 1224326 - 1224353 + F 100 -17.8 -3.66727 | gap 1, opp_overlap 1224326 1224323 1224321 1224319, overlap 1224323 1224321 1224319 1224317 CGAGCAGACACAGAA TCGCACTGCGCCG GCC CGGCGC-GTGCGA TTCTGTGTCTGCTTG TERM 670 1224353 - 1224326 - f 100 -17.8 -3.65656 | gap 1, opp_overlap 1224323 1224321 1224319 1224317 1224326, overlap 1224323 1224321 1224319 CGAGCAGACACAGAA TCGCACTGCGCCG GCC CGGCGC-GTGCGA TTCTGTGTCTGCTTG Rv1096 1224385 - 1225260 + | glycosyl hydrolase Rv1097c 1226144 - 1225263 - | hypothetical protein fumC 1227565 - 1226141 - | fumarate hydratase glpX 1228582 - 1227596 - | fructose 1,6-bisphosphatase II TERM 671 1229282 - 1229240 - g 76 -8.5 -4.25104 | GGGTTCGGACGAAAA CGGTGCCGTCGAGCCG-GT ATGGACG ACACGGCTCACCGG-ACCG GGCGGGGCCACCCAG Rv1100 1228683 - 1229384 + | hypothetical protein Rv1101c 1230548 - 1229391 - | hypothetical protein TERM 672 1229472 - 1229498 + g 71 -9.4 -3.85698 | overlap 1229473 GCGGCGGACGGGTGG TGCTTCGAACTG TTC CAGTTCGACGCC TTTGTACACCGCGAG TERM 673 1229793 - 1229739 - G 75 -13.7 -3.29829 | GATATTGCCGTAGAA GATCATCCCGAT-GCCGAACGGAATCG TCA CGATGCCG-CCGCCCAGCGGGATGATC GACAACGCGGTGAGC Rv1102c 1230971 - 1230660 - | hypothetical protein Rv1103c 1231291 - 1230971 - | hypothetical protein Rv1104 1231301 - 1231990 + | hypothetical protein Rv1105 1232311 - 1232826 + | hypothetical protein TERM 674 1232847 - 1232866 + T 77 -2 -5.00616 | gap 1 AGATAATTCTGGCTA CGGCTTGAC TGT GGCG-GCCG TTTTTTCCGCCCGGG Rv1106c 1233956 - 1232844 - | cholesterol dehydrogenase TERM 675 1233617 - 1233582 - G 100 -22.6 -3.26471 | opp_overlap 1233582 1233582 TGACGTGTAGACGAA CCGCTGCACCCCGGCC CGCT GGCCGGCGTGCAGCAG GTTCTCGGTGCCGCC TERM 676 1233582 - 1233617 + g 95 -20.4 -2.61264 | opp_overlap 1233582, overlap 1233582 TGACGTGTAGACGAA CCGCTGCACCCCGGCC CGCT GGCCGGCGTGCAGCAG GTTCTCGGTGCCGCC TERM 677 1233582 - 1233618 + g 100 -20.2 -3.35679 | gap 1, opp_overlap 1233582, overlap 1233582 TGACGTGTAGACGAA CC-GCTGCACCCCGGCC CGCT GGCCGGCGTGCAGCAGG TTCTCGGTGCCGCCG xseB 1234223 - 1233966 - | exodeoxyribonuclease VII small subunit xseA 1235460 - 1234213 - | exodeoxyribonuclease VII large subunit TERM 678 1234840 - 1234810 - G 75 -6.7 -4.36914 | overlap 1234811 CGTCTCGTCAGAAAA CGGCAGCAGGTCC TCGAC GGAGCCGCCGCCC CGGGCCAGCACGATC Rv1109c 1236095 - 1235457 - | hypothetical protein ispH 1236185 - 1237192 + | 4-hydroxy-3-methylbut-2-enyl diphosphate reductase Rv1111c 1238192 - 1237209 - | hypothetical protein TERM 679 1238755 - 1238719 - g 75 -11.6 -3.72027 | gap 2, overlap 1238705 1238706 AGCGCGCACCAACAA GGCGCGCAA-GCCG-GTC TAC GACGCGGCACTGCGTGCC CAGCAGGTGCTCGAC TERM 680 1238869 - 1238914 + G 73 -13.9 -3.14132 | gap 1, overlap 1238909 1238910 TGTGTTCAACGCCGA CGAGGCGGTGCTCACCGACCCG GCG CGAGTCGGTGAGCTGCG-CGCG TTGGTGGCGCCCGCC Rv1112 1238255 - 1239328 + | translation-associated GTPase Rv1113 1239416 - 1239613 + | hypothetical protein Rv1114 1239610 - 1239984 + | hypothetical protein Rv1115 1240187 - 1240885 + | hypothetical protein Rv1116A 1241390 - 1241115 - | hypothetical protein Rv1116 1241003 - 1241188 + | hypothetical protein Rv1117 1241633 - 1241956 + | hypothetical protein Rv1118c 1242831 - 1241971 - | hypothetical protein Rv1119c 1243013 - 1242864 - | hypothetical protein Rv1120c 1243504 - 1243010 - | hypothetical protein zwf1 1243707 - 1245107 + | glucose-6-phosphate 1-dehydrogenase gnd2 1245129 - 1246151 + | 6-phosphogluconate dehydrogenase-like protein bpoB 1247052 - 1246144 - | peroxidase BpoB TERM 681 1246830 - 1246852 + g 100 -13.4 -4.56597 | opp_overlap 1246818, overlap 1246833 1246847 CGACGTGGTGCCCCT CGTCGGCCAG GAT CTGGCCGGTG TTTTTCCAGGAAAAC TERM 682 1246833 - 1246849 + g 71 -13.7 -2.93708 | overlap 1246830 1246847 CGTGGTGCCCCTCGT CGGCCAG GAT CTGGCCG GTGTTTTTCCAGGAA TERM 683 1247554 - 1247570 + G 78 -13.7 -3.54424 | overlap 1247564 CGGTGATCATGTCGG TGCCGCC GTC GGCGGCA TTTCGCCCGCTGGGC ephC 1247127 - 1248077 + | epoxide hydrolase EphC TERM 684 1248599 - 1248623 + G 71 -15 -2.63102 | gap 1 CGGGTTTCCTGCCGT G-GCGGGCCGC CCAT GCGGCCCGCGC TCATCTCCGACTGGT Rv1125 1248082 - 1249326 + | hypothetical protein Rv1126c 1249935 - 1249330 - | hypothetical protein ppdK 1251404 - 1249932 - | pyruvate phosphate dikinase Rv1128c 1252972 - 1251617 - | hypothetical protein Rv1129c 1254534 - 1253074 - | transcriptional regulator protein Rv1130 1254555 - 1256135 + | hypothetical protein TERM 685 1256231 - 1256221 - g 74 -2.4 -4.8048 | GCCCGACATCAAAAA GGGC CTC GCCG GCGTGGTGGTGGACA gltA1 1256132 - 1257313 + | methylcitrate synthase TERM 686 1257442 - 1257459 + G 72 -6.9 -4.18018 | overlap 1257444 GTGGGTTTTGGCACT CCGGTGC TGCT GCACCTG TTTTACGTCGCCAAG TERM 687 1257959 - 1257975 + G 79 -2.1 -5.06414 | overlap 1257935 GCGGCGAGGTCTACG CGACGCT GAC GGTGACG TTTTTGTTCGGCCGC TERM 688 1258134 - 1258146 + G 71 -3.4 -4.58283 | GTTTCGGCCGCGGTT CATC AAGCG GATG TTTTTCAAGAAGTTC Rv1132 1257325 - 1259055 + | hypothetical protein metE 1261346 - 1259067 - | 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase TERM 689 1259868 - 1259910 + g 77 -16.3 -2.62396 | gap 1 CTGCACCATGTCGTT GC-GCTCCGGTTCGCCGTGC ACCA GCACGTCGAGCCCGAGCCGC TCCTGTAGCGCGATC TERM 690 1260117 - 1260151 + g 75 -11.5 -3.63305 | gap 2 ATTGCCGCGGTGGGC TCCGGACGCGACGATCG CCT CGAT-G-CGCGCCCGGA TTTGCCCATTGTGTA TERM 691 1261992 - 1261939 - g 80 -14.6 -3.40403 | gap 2, overlap 1261940 GGCCGCCTACCAGAA GTTCGGGCAGGAGCACGCCGCCGCGA TCCG TGGCGGCGCCGTGCTGC-ACCCGA-C GGCCACCGCCACGAC TERM 692 1261992 - 1261940 - g 71 -14.8 -2.64099 | gap 1, overlap 1261939 GCCGCCTACCAGAAG TTCGGGCAGGAGCACGCCGCCGCGA TCCG TGGCGGCGCCGTGCTGC-ACCCGAC GGCCACCGCCACGAC Rv1134 1261922 - 1262158 + | hypothetical protein PPE16 1264128 - 1262272 - | PPE family protein Rv1135A 1264314 - 1264556 + | acetyl-CoA acetyltransferase Rv1136 1264606 - 1264947 + | enoyl-CoA hydratase Rv1137c 1265455 - 1265087 - | hypothetical protein Rv1138c 1266488 - 1265472 - | oxidoreductase Rv1139c 1266985 - 1266485 - | hypothetical protein TERM 693 1267172 - 1267190 + H 81 -16 -2.78463 | TGGGACCGCCATTGC CGGGCCGT TCC ACGGCCCG TATCGTCGCCGCGCT TERM 694 1267230 - 1267248 + H 81 -16 -2.78463 | TGCGCGGCTTCTCCT CGGGCCGT TCC ACGGCCCG TATCGTCGCCGCGCT Rv1140 1267347 - 1268195 + | integral membrane protein echA11 1269009 - 1268203 - | enoyl-CoA hydratase echA10 1269958 - 1269152 - | enoyl-CoA hydratase TERM 695 1269572 - 1269551 - G 81 -5.1 -4.77438 | AGCGAGCATGAAAAA CGCATTGTC GGAG GCCAATACG AGGTCACAAGCGAGC TERM 696 1270435 - 1270411 - g 74 -12.1 -3.53012 | opp_overlap 1270431, overlap 1270373 CCGGCTGGGGCCAAA CCGGCCCGC GTAGTCA GCAGGCCGG TCACGACATCAACTA mcr 1270062 - 1271144 + | alpha-methylacyl-CoA racemase Rv1144 1271156 - 1271908 + | short-chain type dehydrogenase/reductase TERM 697 1271945 - 1271925 - f 100 -13.9 -4.72007 | overlap 1271927 CCGCACCAAAAGAAA GACCCCCGC GTT GCGGGGGAC CGGAATCGGGAACAA TERM 698 1271943 - 1271927 - f 95 -15.1 -3.97149 | overlap 1271925 GCACCAAAAGAAAGA CCCCCGC GTT GCGGGGG ACCGGAATCGGGAAC mmpL13a 1272423 - 1273334 + | transmembrane transport protein MmpL13A mmpL13b 1273355 - 1274767 + | transmembrane transport protein MmpL13B Rv1147 1274900 - 1275550 + | hypothetical protein Rv1148c 1277748 - 1276300 - | hypothetical protein TERM 699 1276410 - 1276420 + g 83 -8.2 -4.62302 | GTAGCCATTCGGTGT CGCC GTG GGCG TTTTTGCGGGTCTTC Rv1149 1277893 - 1278300 + | transposase Rv1151c 1279617 - 1278904 - | NAD-dependent deacetylase TERM 700 1279332 - 1279299 - G 91 -13.1 -4.25676 | gap 1 AACGAAATTCGAAAA GGCTGCCGTGCAGGTG ATG CACC-GCACCGCTGCC GGCGCGCTCGTGCAG Rv1152 1279655 - 1280020 + | transcriptional regulatory protein omt 1280846 - 1279998 - | O-methyltransferase Rv1154c 1281484 - 1280843 - | hypothetical protein Rv1155 1281429 - 1281872 + | hypothetical protein Rv1156 1282306 - 1282893 + | hypothetical protein Rv1157c 1284171 - 1283056 - | hypothetical protein Rv1158c 1284862 - 1284179 - | hypothetical protein pimE 1284992 - 1286287 + | mannosyltransferase phhB 1286568 - 1286284 - | pterin-4-alpha-carbinolamine dehydratase mutT2 1286595 - 1287020 + | 7,8-dihydro-8-oxoguanine-triphosphatase TERM 701 1287648 - 1287621 - g 74 -14.8 -3.02144 | opp_overlap 1287618 1287621 GGACCGGCCCGAATA CGAGCCACGAGG TTGT CCCCGTGGCGCG TCGTTCTCCTGGTAC TERM 702 1289339 - 1289363 + G 72 -14.9 -2.75064 | overlap 1289336 ATGTCGCCGACGAGG CCCGCGCCGCG GGC CGCGACGTGGG TGATTACGTCGCCGA narG 1287328 - 1291026 + | respiratory nitrate reductase subunit alpha NarG narH 1291065 - 1292741 + | respiratory nitrate reductase subunit beta NarH narJ 1292798 - 1293403 + | respiratory nitrate reductase subunit delta NarJ narI 1293406 - 1294146 + | respiratory nitrate reductase subunit gamma NarI TERM 703 1294495 - 1294506 + G 75 -7.2 -4.33417 | overlap 1294498 TCCGAGGGTCCATTG CCGC AGAC GCGG TTTGTTCTGCGTAAA typA 1294168 - 1296054 + | GTP-binding translation elongation factor TypA TERM 704 1297120 - 1297130 + G 72 -6.8 -4.20696 | GGCCGACACCCAGGT TCGC AAG GCGA TTTTGGGGTTGCTGG lpqW 1296152 - 1298059 + | lipoprotein LpqW Rv1167c 1298692 - 1298087 - | transcriptional regulatory protein PPE17 1299804 - 1298764 - | PPE family protein PE11 1300124 - 1299822 - | PE family protein mshB 1300304 - 1301215 + | N-Acetyl-1-D-myo-Inosityl-2-amino-2-deoxy-alpha- D-glucopyranoside deacetylase mshB (GlcNAc-Ins deacetylase) Rv1171 1301307 - 1301747 + | hypothetical protein PE12 1302681 - 1301755 - | PE family protein fbiC 1302931 - 1305501 + | FO synthase TB8.4 1306001 - 1305669 - | low molecular weight T-cell antigen TB8.4 fadH 1308226 - 1306202 - | NADPH dependent 2,4-dienoyl-CoA reductase TERM 705 1307101 - 1307146 + g 77 -16.3 -2.52464 | gap 3, opp_overlap 1307126 1307127 CGGCCACCGAGCGGG CGCGCCGGGTCG-GGGACAGCA CCAAC TGC-GTCTCGCG-CCCGGCGCG TGGATTGAGCAGACA Rv1176c 1308792 - 1308223 - | hypothetical protein fdxC 1309005 - 1309331 + | ferredoxin FdxC TERM 706 1310226 - 1310181 - g 70 -10.3 -3.73953 | gap 1, opp_overlap 1310192 1310204, overlap 1310207 ACGACGCGCACGAAA GGCAACAGCGGGAGCGCTACGC ACA ACGGCGTGC-CGCGCTGTTGCC GGCGCTGGGCTCCGC Rv1178 1309364 - 1310452 + | N-succinyldiaminopimelate aminotransferase Rv1179c 1313299 - 1310480 - | hypothetical protein TERM 707 1312229 - 1312242 + g 80 -9.5 -4.16842 | overlap 1312208 CAGCGCGTGCGCGTC GCGCG GATC CGCGC TTTGTTGCAGGTGCC TERM 708 1313385 - 1313340 - H 100 -30.1 -3.53091 | gap 1, opp_overlap 1313342 1313349, overlap 1313349 ACGTTGGGCGCGAAA GACGCAAAAGGCCCCG-AATCC AAC GGATTTCGGGGCCTTTTGCGTC TGCTCGCGCCCGTGC TERM 709 1313342 - 1313383 + H 100 -26.9 -2.78463 | gap 1, opp_overlap 1313340 1313349, overlap 1313349 GTTGGGCGCGAAAGA CGCAAAAGGCCCCG-AATCC AAC GGATTTCGGGGCCTTTTGCG TCTGCTCGCGCCCGT TERM 710 1313376 - 1313349 - H 100 -16.4 -4.323 | gap 1, opp_overlap 1313342 1313349, overlap 1313340 GCGAAAGACGCAAAA GGCCCCG-AATCC AAC GGATTTCGGGGCC TTTTGCGTCTGCTCG TERM 711 1313349 - 1313376 + H 100 -16.4 -4.24948 | gap 1, opp_overlap 1313349 1313340, overlap 1313342 GCGAAAGACGCAAAA GGCCCCG-AATCC AAC GGATTTCGGGGCC TTTTGCGTCTGCTCG TERM 712 1315064 - 1315024 - g 80 -14.8 -3.40403 | gap 1, opp_overlap 1315017 1315016 1315053, overlap 1315009 GCGCCGGTATCAGAA CCAGCGGCTTCGGGACCTG AGCT CAC-TCCCGAAGCCGGTGG GCTGGCGTTGTTTCC pks3 1313725 - 1315191 + | polyketide beta-ketoacyl synthase PKS3 TERM 713 1315200 - 1315247 + F 90 -13.6 -4.08767 | gap 3 GGGCTAAACGCTGTC CTGC-CGCCGTGCAC-ACCGACC CGTCC GGACGGTTGTG-ACGGCGAGCAG TTTTGACGAGCTGAG TERM 714 1319404 - 1319426 + G 75 -9.1 -4.09685 | CAAGGCGCATATGCG GCGGCCAAC AGCTG GTTGGACGC TTTTGCCCACTGGCG pks4 1315234 - 1319982 + | polyketide beta-ketoacyl synthase PKS4 papA3 1320035 - 1321453 + | polyketide synthase associated protein PapA3 mmpL10 1321520 - 1324528 + | transmembrane transport protein MmpL10 Rv1184c 1325611 - 1324532 - | hypothetical protein TERM 715 1325074 - 1325050 - G 72 -5 -4.57073 | gap 1, overlap 1325063 TACCGGGGGGAAAAA TTCGG-GCCAG GAAG CTCGCTCCGAA CGCATGACGTCCGGT fadD21 1327512 - 1325776 - | acyl-CoA synthetase Rv1186c 1329305 - 1327689 - | hypothetical protein TERM 716 1329177 - 1329137 - G 70 -11.8 -3.45742 | gap 1, overlap 1329135 1329139 1329140 CGATCAGGAAGAACA CAT-CGGCCGAGCCCGCCG CGGC CGCCAGGCCCAGCCGCACG TCGTCGGAATCGATC TERM 717 1329174 - 1329139 - G 71 -12.4 -3.29544 | overlap 1329137 1329135 1329140 ATCAGGAAGAACACA TCGGCCGAGCCCGCCG CGGC CGCCAGGCCCAGCCGC ACGTCGTCGGAATCG TERM 718 1329173 - 1329140 - G 74 -15.9 -2.57003 | overlap 1329139 1329137 1329135 TCAGGAAGAACACAT CGGCCGAGCCCGCCG CGGC CGCCAGGCCCAGCCG CACGTCGTCGGAATC rocA 1329390 - 1331021 + | pyrroline-5-carboxylate dehydrogenase ROCA Rv1188 1331021 - 1332010 + | proline dehydrogenase sigI 1332092 - 1332964 + | RNA polymerase sigma factor SigI TERM 719 1333539 - 1333557 + G 85 -13.1 -4.07687 | overlap 1333498 CCGGTCGGCACTGGA GCCGCGC AGACC GCGCGGC TTTTCGGGCGGGAAT Rv1190 1332980 - 1333858 + | hypothetical protein TERM 720 1334307 - 1334364 + G 73 -10.9 -3.74747 | overlap 1334270 1334360 CCGACCGGGTGGTCG CCGCCGGTGTCCTCGGCGGCGTCGCGC CGAC GCGCGGCCCGGACGCGATTAGCGGCGG TTTGATGCGCCTTGG Rv1191 1333931 - 1334845 + | hypothetical protein Rv1192 1334927 - 1335754 + | hypothetical protein TERM 721 1337010 - 1337028 + G 71 -14.6 -2.62184 | TGGCGGAGGCGGCAG TCGTCGGG GTG CCCGACGA TGATCTAGGCCAGCG fadD36 1335794 - 1337215 + | acyl-CoA synthetase Rv1194c 1338513 - 1337248 - | hypothetical protein TERM 722 1337614 - 1337596 - G 77 -10.2 -3.91488 | AACGTCGGCAAAGAA GGCGACCC GCT GGGTCGAC CGTAGCCGTGACAAG PE13 1339003 - 1339302 + | PE family protein TERM 723 1339825 - 1339792 - g 72 -13.8 -3.01924 | opp_overlap 1339818 GATGTGGGCCCAAGA CGCCGCCGCGATGT TTGGCT ACGCCGCGGCGACG GCGACGGCGACGGCG PPE18 1339349 - 1340524 + | PPE family protein esxK 1340659 - 1340955 + | Esat-6 like protein esxK (Esat-6 like protein 3) esxL 1341006 - 1341290 + | putative ESAT-6 like protein ESXL (ESAT-6 like protein 4) Rv1199c 1342605 - 1341358 - | transposase TERM 724 1343615 - 1343591 - g 83 -2.7 -5.21709 | overlap 1343592 1343593 GGGCAGACGAAAAAA CCCGTTTGGGC CCA GCCGAAACGCC GATTGCCCAAGTACT Rv1200 1342942 - 1344219 + | integral membrane transport protein Rv1201c 1345169 - 1344216 - | transferase dapE 1345260 - 1346324 + | dipeptidase Rv1203c 1346905 - 1346321 - | hypothetical protein Rv1204c 1348624 - 1346936 - | hypothetical protein TERM 725 1348385 - 1348353 - G 72 -14.7 -2.75064 | overlap 1348350 CCGGTCAGGGAACTA CGCGCCGCCCGCAGC AGC GCCGCGGGCCGCCCA ATGTCGGCTCCGGAG Rv1205 1348719 - 1349282 + | hypothetical protein fadD6 1349332 - 1351125 + | acyl-CoA synthetase folP2 1351191 - 1352147 + | dihydropteroate synthase 2 FolP2 Rv1208 1352144 - 1353118 + | hypothetical protein Rv1209 1353157 - 1353525 + | hypothetical protein tagA 1353522 - 1354136 + | DNA-3-methyladenine glycosylase I Rv1211 1354243 - 1354470 + | hypothetical protein Rv1212c 1355661 - 1354498 - | putative glycosyl transferase glgC 1355836 - 1357050 + | glucose-1-phosphate adenylyltransferase TERM 726 1357115 - 1357074 - T 100 -21.9 -2.78463 | gap 1, opp_overlap 1357074 1357081, overlap 1357076 1357078 1357081 AGCGGCGCGAGCAGA CACAGAATCGCCC-ATTTCG GCA CGAAATTGGGCGATTCTGCG TCTGCTCGGCGCGGT TERM 727 1357074 - 1357115 + T 90 -19.7 -2.78463 | gap 1, opp_overlap 1357074 1357076 1357078 1357081, overlap 1357081 AGCGGCGCGAGCAGA CACAGAATCGCCC-ATTTCG GCA CGAAATTGGGCGATTCTGCG TCTGCTCGGCGCGGT TERM 728 1357113 - 1357076 - T 93 -20.9 -2.94099 | gap 1, opp_overlap 1357074 1357081, overlap 1357074 1357078 1357081 CGGCGCGAGCAGACA CAGAATCGCCC-ATTTCG GCA CGAAATTGGGCGATTCTG CGTCTGCTCGGCGCG TERM 729 1357111 - 1357078 - T 90 -17.7 -3.02471 | gap 1, opp_overlap 1357074 1357081, overlap 1357076 1357074 1357081 GCGCGAGCAGACACA GAATCGCCC-ATTTCG GCA CGAAATTGGGCGATTC TGCGTCTGCTCGGCG TERM 730 1357108 - 1357081 - T 81 -13.6 -3.65656 | gap 1, opp_overlap 1357074 1357081, overlap 1357078 1357076 1357074 CGAGCAGACACAGAA TCGCCC-ATTTCG GCA CGAAATTGGGCGA TTCTGCGTCTGCTCG TERM 731 1357081 - 1357108 + T 79 -13.6 -3.40299 | gap 1, opp_overlap 1357081 1357078 1357076 1357074, overlap 1357074 CGAGCAGACACAGAA TCGCCC-ATTTCG GCA CGAAATTGGGCGA TTCTGCGTCTGCTCG PE14 1357625 - 1357293 - | PE family protein Rv1215c 1359444 - 1357759 - | hypothetical protein Rv1216c 1360146 - 1359472 - | integral membrane protein Rv1217c 1361801 - 1360155 - | tetronasin-transport integral membrane protein ABC transporter TERM 732 1361340 - 1361310 - G 78 -15.5 -3.16267 | GGCAAGCAGACCCAA TGCACCGATCGCG CCGGT CGCGATCGACGCA CCGAACGACAGCAGC Rv1218c 1362733 - 1361798 - | tetronasin-transport ATP-binding protein ABC transporter Rv1219c 1363361 - 1362723 - | transcriptional regulatory protein TERM 733 1363448 - 1363489 + r 100 -22.5 -2.78715 | opp_overlap 1363448 1363455, overlap 1363455 ACTTTGCCGAGCAGA CGCAAAATCGCCCTGGAAC GCAC GGTTCAGGGCGATTTTGCG TCTGCTCGCCGAATT TERM 734 1363489 - 1363448 - R 91 -21.2 -2.78463 | gap 1, opp_overlap 1363448 1363455, overlap 1363455 ACTTTGCCGAGCAGA CGCAAAATCGCCCTGGAAC GCACG GTTC-AGGGCGATTTTGCG TCTGCTCGCCGAATT TERM 735 1363482 - 1363455 - R 89 -10.7 -4.24948 | gap 1, opp_overlap 1363448 1363455, overlap 1363448 CGAGCAGACGCAAAA TCGCCCTGGAAC GCACG GTTC-AGGGCGA TTTTGCGTCTGCTCG TERM 736 1363455 - 1363482 + r 91 -12 -4.24948 | opp_overlap 1363455 1363448, overlap 1363448 CGAGCAGACGCAAAA TCGCCCTGGAAC GCAC GGTTCAGGGCGA TTTTGCGTCTGCTCG Rv1220c 1364150 - 1363503 - | methyltransferase sigE 1364413 - 1365186 + | RNA polymerase sigma factor SigE Rv1222 1365344 - 1365808 + | hypothetical protein TERM 737 1365994 - 1366010 + G 84 -9.3 -4.56597 | opp_overlap 1365970 GAACGGCGGAGGCCG CCTGGCG CCG CGCCCGG TTTTTCGGCCACCGG htrA 1365875 - 1367461 + | serine protease HtrA tatB 1367463 - 1367858 + | sec-independent translocase Rv1225c 1368721 - 1367891 - | hypothetical protein Rv1226c 1370295 - 1368832 - | hypothetical protein TERM 738 1369256 - 1369309 + g 100 -23.2 -3.36327 | gap 2, opp_overlap 1369237 GCCCGGGTCCACCTG CGCCGG-GCGGCGGCCGGGCCG-TGC CGGC GCAGCGGCCCCGCTGCCGCGTCGGTG TTGTCGATCAGGTCG Rv1227c 1370825 - 1370292 - | hypothetical protein lpqX 1370920 - 1371477 + | lipoprotein LpqX mrp 1372949 - 1371777 - | MRP family ATP-binding protein Rv1230c 1374197 - 1372962 - | hypothetical protein Rv1231c 1374864 - 1374322 - | hypothetical protein Rv1232c 1376168 - 1374861 - | hypothetical protein Rv1233c 1376826 - 1376230 - | hypothetical protein Rv1234 1376976 - 1377503 + | hypothetical protein lpqY 1377524 - 1378930 + | sugar-binding lipoprotein LpqY TERM 739 1378947 - 1378962 + G 78 -10.4 -4.13767 | opp_overlap 1378944 CTCCGTTGAACAGCG GACCGC CACC GCGGTC TTTTCCCGTACCGGG sugA 1378927 - 1379850 + | sugar-transport integral membrane protein ABC transporter SugA TERM 740 1380584 - 1380616 + G 75 -3.4 -4.77698 | gap 1, overlap 1380573 1380588 GGCTCGATCGCGGCC GGCG-CGATCGTGAT TACG ATCCCGATCATCGTC TTTGTTTTAATCTTC sugB 1379855 - 1380679 + | sugar-transport integral membrane protein ABC transporter SugB sugC 1380684 - 1381865 + | sugar-transport ATP-binding protein ABC transporter SugC corA 1383042 - 1381942 - | magnesium/cobalt transporter CorA mdh 1383213 - 1384202 + | malate dehydrogenase Rv1241 1384278 - 1384538 + | hypothetical protein Rv1242 1384535 - 1384966 + | hypothetical protein PE_PGRS23 1386677 - 1384989 - | PE-PGRS family protein TERM 741 1385468 - 1385415 - G 78 -14.4 -3.53012 | CCCGCTGCCCCCAAA GCCGCCGGCGCCACCAACGTCAGC CGAGGC ACCGACGCCGCCGTCGCCGCCGGC ACCACCATTGCCCCC TERM 742 1385723 - 1385709 - G 75 -11.4 -3.74251 | GACAGCGTCACCAAA GCCGCT TTG AGCGGC GCCACCGTTACCGCC lpqZ 1386857 - 1387717 + | lipoprotein LpqZ Rv1245c 1388628 - 1387798 - | short-chain type dehydrogenase/reductase Rv1246c 1388978 - 1388685 - | hypothetical protein Rv1247c 1389244 - 1388975 - | hypothetical protein TERM 743 1389067 - 1389093 + g 74 -10 -3.76224 | opp_overlap 1389055 GAATGGCCTCGCTGG CGCCAGGGGTGC GTA GCACCTCCAGCG TTTCCTCGATGGACG TERM 744 1389329 - 1389379 + r 79 -15.5 -2.86432 | gap 1 TCGTCGCTGTTTGAT GTCTCCTCGA-GCGTTCGGCTGAG CGAA CTCAGCCGAACGCCTCGTCGAGGA TCTCCTGCTGTTCGA kgd 1393052 - 1389357 - | alpha-ketoglutarate decarboxylase TERM 745 1389696 - 1389717 + g 70 -10.1 -3.66844 | opp_overlap 1389686 ATACAGCTTGCCACT GGTCAGCAG GATC CGGCTGACC TTGTTGCGGTCTCCG Rv1249c 1393982 - 1393194 - | hypothetical protein TERM 746 1395795 - 1395741 - gR 78 -15.7 -2.76046 | gap 2, overlap 1395738 GGAACCGGAAGAGGA TTGCGACACC-CAGCCGCTG-CGGGCG TCG CGCCCGGCAGCGGCCGCAGCGTCACGC AGCGGTGCTGGGGGT Rv1251c 1399240 - 1395821 - | hypothetical protein Rv1250 1394179 - 1395918 + | drug-transport integral membrane protein TERM 747 1396739 - 1396778 + gT 71 -3.4 -4.57569 | gap 1 TGTGTACTGGCTCCC GTCGATCGACTGCCAGCGC CCA GCGGTG-TGGTCGTGCGGC TTTTTGGCGACCTGC TERM 748 1399127 - 1399141 + gT 70 -12.8 -2.92613 | overlap 1399123 GTCGTCAACTGCGAC GGCCGG TCC CCGGCC TAGTTTCGCGTCGAA lprE 1399904 - 1399296 - | lipoprotein LprE TERM 749 1401237 - 1401286 + G 78 -15.9 -3.21099 | gap 2, overlap 1401239 AGCATGATGTCCCGA TGGCTGACATCGCCGCGGCACTG GCCGTG CAGTGCCGCGGCGGTG--AGGCA TTCCTGATGGCACCC TERM 750 1401239 - 1401285 + G 87 -18.8 -2.52516 | gap 1, overlap 1401237 CATGATGTCCCGATG GCTGACATCGCCGCGGCACTG GCCGTG CAGTGCCGCGGCGGTGA-GGC ATTCCTGATGGCACC deaD 1399970 - 1401661 + | cold-shock DEAD-box protein A TERM 751 1401696 - 1401677 - g 77 -10 -3.90112 | gap 1, overlap 1401680 CCCTGCCCAAGGAAA GAG-CCGCC CAG GGCGGACTC GAGCGGATCGCCCAC TERM 752 1401840 - 1401855 + G 91 -9 -4.79223 | GTCGTCCCGCATGGA GATCGG CGTT CCGATC TTTTTCGTGCTGTCG Rv1254 1401658 - 1402809 + | acyltransferase Rv1255c 1403386 - 1402778 - | transcriptional regulatory protein cyp130 1404603 - 1403386 - | ytochrome P450 130 CYP130 Rv1257c 1406084 - 1404717 - | oxidoreductase Rv1258c 1407340 - 1406081 - | integral membrane transport protein Rv1259 1407339 - 1408238 + | hypothetical protein Rv1260 1408240 - 1409358 + | hypothetical protein Rv1261c 1409933 - 1409484 - | hypothetical protein Rv1262c 1410372 - 1409938 - | HIT-like protein amiB2 1410431 - 1411819 + | amidase TERM 753 1412966 - 1413004 + G 70 -2.3 -4.62069 | AGTGGTCCTTCGCCG GCC-CCCGTCGCCTCAGGG GAA TCC-GGGGTGACGTCAGGC TTTTTCGAGTCCGGC Rv1264 1411894 - 1413087 + | adenylyl cyclase TERM 754 1413603 - 1413579 - g 89 -11.3 -4.24342 | overlap 1413580 GCCCCGAGGAAGAAA GTGCGGCCCGA GCC TCGGGCCGCGT GTCGCGATTCCGCGA TERM 755 1413602 - 1413580 - g 76 -14.8 -3.14284 | overlap 1413579 CCCCGAGGAAGAAAG TGCGGCCCGA GCC TCGGGCCGCG TGTCGCGATTCCGCG Rv1265 1413260 - 1413940 + | hypothetical protein pknH 1415840 - 1413960 - | transmembrane serine/threonine-protein kinase H TERM 756 1414799 - 1414842 + g 91 -17.4 -3.73224 | gap 1 CGGTGGGGCCAGGCC GCTGTCCGGCA-GGCCCCGGC TGG GCCGGGGGCGTGTAGGACGGC TTTGGTGCCGGCTGG embR 1417347 - 1416181 - | transcriptional regulatory protein EMBR TERM 757 1416972 - 1416989 + g 89 -8.3 -5.00616 | overlap 1416968 ACCGGCCGGCGGCGG CCGCGTG CACG CCCGCGG TTTTTTCGGCAACAA TERM 758 1417101 - 1417049 - G 71 -12.6 -3.32963 | gap 1 ATGCTGAGCCGATAA CCCGGCGGCGCTGCGGCCAACACCA CCCG TGG-GTCGATCCCGGCGCCACCGAG GAGCTTACGCAGATT TERM 759 1417589 - 1417631 + r 81 -16.3 -2.82635 | gap 1, opp_overlap 1417582 1417581, overlap 1417594 CCAAACATGCGATCG GCGGGCAGCCGACCCGGTGT TCTT GCAACGAGT-GGCTGCCCGC TGTGGTGATCGACAT Rv1268c 1418356 - 1417658 - | hypothetical protein Rv1269c 1418953 - 1418579 - | hypothetical protein lprA 1419748 - 1419014 - | lipoprotein LprA TERM 760 1419139 - 1419153 + g 72 -7.1 -4.1964 | opp_overlap 1419133 CCGAAGCGATCCAGA CGGTG GTGGG CACCG TTTTGACGTCTTCGG TERM 761 1419877 - 1419889 + r 70 -7.7 -3.9941 | opp_overlap 1419887 CGGCCGAATTGAATG GCGTT TCA AACGC TTTCGTTGTCCGGCG TERM 762 1419949 - 1419910 - R 95 -18.7 -3.53012 | gap 1, overlap 1419887 1419915 TTGTCCGGCGGCAAA GCGAATGCGGGGATCCCG GTTGA CGGGATCCCCGCAT-CGG GTGGGCAGCGGCTAG TERM 763 1419945 - 1419915 - R 100 -22.7 -3.27525 | overlap 1419887 1419910 CGGCGGCAAAGCGAA TGCGGGGATCCCG GTTGA CGGGATCCCCGCA TCGGGTGGGCAGCGG Rv1271c 1420302 - 1419961 - | hypothetical protein Rv1272c 1422305 - 1420410 - | drugs-transport transmembrane ATP-binding protein ABC transporter TERM 764 1421461 - 1421485 + g 72 -13.5 -3.09327 | TCGTGGAACCGTTCT CGTGCGGCCGC TTG GTGGCCGAACG TCTTGACTACCGTGA Rv1273c 1424050 - 1422302 - | drugs-transport transmembrane ATP-binding protein ABC transporter TERM 765 1424320 - 1424293 - g 83 -9 -4.30719 | TCCGGCGACAACAAA CCGGGAGCGACG ATCC CGTCGACACCGG CAAACGCTGAGGGCC lprB 1424197 - 1424754 + | lipoprotein LprB lprC 1424751 - 1425293 + | lipoprotein LprC Rv1276c 1425914 - 1425438 - | hypothetical protein Rv1277 1426164 - 1427417 + | hypothetical protein TERM 766 1427723 - 1427689 - g 71 -12.2 -3.29461 | gap 1 CAAGCGTTTCCACAA GCGGTGCGAG-ACGG AGTTGA CCGTGCTGGCACCGC GCCGCGAGCAGCTGA Rv1278 1427414 - 1430041 + | hypothetical protein TERM 767 1430479 - 1430445 - g 75 -12.9 -3.35679 | TCGCCGCATCGAGAA CGTCACCGCTGCC TGGCACTTT GTCAGCGGTGACG ACAGCGGAGTAACCG Rv1279 1430062 - 1431648 + | dehydrogenase FAD flavoprotein GMC oxidoreductase oppA 1433440 - 1431665 - | periplasmic oligopeptide-binding lipoprotein OppA TERM 768 1432497 - 1432515 + g 74 -10.2 -3.87364 | overlap 1432498 AGCTGGTCCAGTGTG CCGACGCC GGT GGCGTCGA TTGTGTTGTTCTGCA TERM 769 1432498 - 1432514 + g 71 -13.7 -2.91696 | overlap 1432497 GCTGGTCCAGTGTGC CGACGCC GGT GGCGTCG ATTGTGTTGTTCTGC oppD 1435271 - 1433433 - | oligopeptide-transport ATP-binding protein ABC transporter OppD TERM 770 1434230 - 1434265 + g 75 -9.6 -4.08767 | gap 1, opp_overlap 1434214 GTACCCGCACGACCA CCGAGGCGTCGCCGAGT GCA GCCGGGCGG-GCCTCGG TTTTGACCCGGTAGA TERM 771 1434528 - 1434512 - G 78 -10.1 -4.14739 | GGACCGAGCCTAAAA GCCCCAC GGT GTAGGGC ATCCGGCGATCGCGG oppC 1436143 - 1435268 - | oligopeptide-transport integral membrane protein ABC transporter OppC oppB 1437117 - 1436140 - | oligopeptide-transport integral membrane protein ABC transporter OppB TERM 772 1437071 - 1437058 - G 70 -2.3 -4.63527 | overlap 1437059 GCAGTACGTCAAAAA CGACG CCAG CGCCA GCAGCACCAGGTAGT Rv1284 1437324 - 1437815 + | hypothetical protein cysD 1437909 - 1438907 + | sulfate adenylyltransferase subunit 2 TERM 773 1439750 - 1439762 + G 70 -10.5 -3.65351 | opp_overlap 1439745 GTGGCAGAAGCGTTT CCGCC GAT GGCGG TTTCGGTGCGGCTCG cysN 1438907 - 1440751 + | bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein Rv1287 1440805 - 1441290 + | hypothetical protein Rv1288 1441348 - 1442718 + | hypothetical protein Rv1289 1442767 - 1443399 + | hypothetical protein Rv1290c 1445047 - 1443482 - | hypothetical protein TERM 774 1444206 - 1444230 + g 70 -8.5 -3.91897 | overlap 1444198 1444207 CTGGCTGCCGCCAAT TCGGCGATGTC GTC GACGTCGACGG TTTGTAGGTAACCCG TERM 775 1444263 - 1444295 + g 72 -14.2 -2.97245 | gap 1, opp_overlap 1444261, overlap 1444258 1444265 1444267 TGCGGGGCCAACAGC GGCACCGCATCAGCC GGGG GGCTGG-GCGGTGTC TCTACTTGTCGATCC TERM 776 1444265 - 1444293 + g 70 -13.2 -3.03741 | gap 1, opp_overlap 1444261, overlap 1444263 1444258 1444267 CGGGGCCAACAGCGG CACCGCATCAGCC GGGG GGCTGG-GCGGTG TCTCTACTTGTCGAT Rv1290A 1445058 - 1445372 + | hypothetical protein TERM 777 1445440 - 1445497 + T 70 -10.6 -3.65351 | gap 1, opp_overlap 1445449 1445450, overlap 1445442 1445443 CCGTACGTCACCCTT GATCGACAAGTGCGGATGTGGGGACCC GTCCG GGGTCCCCACAT-CGTGGTGGTCGCTG TTTAGCTCGAGGTCA TERM 778 1445442 - 1445495 + T 76 -13.2 -3.40775 | gap 1, opp_overlap 1445449 1445450, overlap 1445440 1445443 GTACGTCACCCTTGA TCGACAAGTGCGGATGTGGGGACCC GTCCG GGGTCCCCACAT-CGTGGTGGTCGC TGTTTAGCTCGAGGT TERM 779 1445443 - 1445494 + T 80 -16.7 -2.64144 | gap 1, opp_overlap 1445449 1445450, overlap 1445442 1445440 TACGTCACCCTTGAT CGACAAGTGCGGATGTGGGGACCC GTCCG GGGTCCCCACAT-CGTGGTGGTCG CTGTTTAGCTCGAGG Rv1291c 1445834 - 1445499 - | hypothetical protein TERM 780 1447440 - 1447407 - g 81 -14.5 -3.53224 | gap 1, opp_overlap 1447407 CATCGCCCGGCTAAA GGCCGCGGCCGCCGCC TTC GGTGACGACC-CGGCC ACCGTCGAGGTGCTC argS 1446379 - 1448031 + | arginyl-tRNA synthetase TERM 781 1448918 - 1448963 + G 72 -11.7 -3.50393 | gap 1, overlap 1448905 GCCGACGCCCAAGCT CGTTGTGGAGCCCGGACGCGCC ATC GCCG-GACCGGGCACCATCACG TTGTATGAGGTCGGC lysA 1448028 - 1449371 + | diaminopimelate decarboxylase LysA thrA 1449375 - 1450700 + | homoserine dehydrogenase thrC 1450697 - 1451779 + | threonine synthase TERM 782 1452433 - 1452447 + G 72 -7 -4.21194 | opp_overlap 1452434, overlap 1452434 AGGGTCATCCCGACA ACGCGG CGG CCGCGG TTTTGGGTGGTGCCG thrB 1451997 - 1452947 + | homoserine kinase TERM 783 1453187 - 1453164 - f 72 -3.8 -4.65916 | gap 1 CTGACTGCAACAAAA CCCCGTATGAC GTG ATCAG-CGGGG GAAGGAAAGGAAATC TERM 784 1453463 - 1453418 - g 71 -14 -2.80816 | overlap 1453421 CTGCGATTGAGGAGA TCAGGCGACAGGCCAACGGC GCCCCA GCCGTTGACCGGTCGGCTCA AGAGCACGACAAGGG TERM 785 1453460 - 1453421 - g 74 -15.7 -2.66964 | overlap 1453418 CGATTGAGGAGATCA GGCGACAGGCCAACGGC GCCCCA GCCGTTGACCGGTCGGC TCAAGAGCACGACAA TERM 786 1453513 - 1453476 - g 70 -11.9 -3.47307 | gap 1 TCAAGAGCACGACAA GGGCGACCGGCCGCCCAG TTC CGAGGCA-CCGGCCACCC AGGGGGAACAGACCC rho 1453204 - 1455012 + | transcription termination factor Rho rpmE 1455163 - 1455405 + | 50S ribosomal protein L31 prfA 1455495 - 1456568 + | peptide chain release factor 1 hemK 1456565 - 1457542 + | hypothetical protein Rv1301 1457558 - 1458211 + | hypothetical protein TERM 787 1458949 - 1458967 + G 79 -7.4 -4.46212 | TCGGTGGGTTTGCTT CGTGACCA CGG TGGTGACG TTTTGTACTACCCGC rfe 1458295 - 1459509 + | undecapaprenyl-phosphate alpha-N-acetylglucosaminyltransferase rfe (UDP-GlcNAc transferase) Rv1303 1459766 - 1460251 + | hypothetical protein atpB 1460244 - 1460996 + | F0F1 ATP synthase subunit A TERM 788 1461112 - 1461147 + G 74 -12.6 -3.51365 | gap 1 CCGGTGGCGCCATCG GCGCCGGTATCGGTGAC GGT GTCGCCGGTAACG-CGC TTATCTCCGGTGTCG atpE 1461045 - 1461290 + | F0F1 ATP synthase subunit C atpF 1461321 - 1461836 + | F0F1 ATP synthase subunit B atpH 1461843 - 1463183 + | F0F1 ATP synthase subunit delta atpA 1463228 - 1464877 + | F0F1 ATP synthase subunit alpha atpG 1464884 - 1465801 + | F0F1 ATP synthase subunit gamma TERM 789 1467289 - 1467275 - g 82 -11.4 -4.1552 | opp_overlap 1467283 GACCTGGCCAAGAAA GCCGAG AGT CTCGGC GCCAAGCTGTGACGG atpD 1465841 - 1467301 + | F0F1 ATP synthase subunit beta atpC 1467315 - 1467680 + | F0F1 ATP synthase subunit epsilon TERM 790 1467686 - 1467724 + F 93 -17.5 -3.42574 | opp_overlap 1467681 1467682 GATCGACTAACCCGC CGATGAGCGCGCCCATG ATCGG CATGGTCGTGCTCGTCG TTGTCCTGGGGTTGG Rv1312 1467688 - 1468131 + | hypothetical protein Rv1313c 1469505 - 1468171 - | transposase Rv1314c 1470252 - 1469671 - | hypothetical protein murA 1470321 - 1471577 + | UDP-N-acetylglucosamine 1-carboxyvinyltransferase TERM 791 1471745 - 1471784 + T 81 -7.1 -4.77173 | overlap 1471746 TTTTGTTGTTATTTT TGGCCATGCTCTTGATG CCCCGT TGTCGGGGGCGTGGCCG TTTGTTTTGTCAGGA TERM 792 1471819 - 1471837 + T 75 -11.8 -3.57389 | opp_overlap 1471812 1471810, overlap 1471817 1471828 TCTAAATACCTTTGG CTCCCTTT TCC AAAGGGAG TGTTTGGGTTTTGTT TERM 793 1473418 - 1473400 - T 91 -11.7 -4.32034 | GGAGCACCACGAAAA CGCCCCA ACTGG TGGGGCG TAGGCCGTGAGGGGT TERM 794 1473487 - 1473475 - T 76 -7.7 -4.35483 | overlap 1473477 GTGCATGACAACAAA GTTGG CCA CCAAC ACACTGTTGGGTCCT TERM 795 1473596 - 1473626 + T 74 -9.7 -3.93004 | overlap 1473599 GTTGCGAGCATCAAT GGATACGCTGCCG GCTAG CGGTGGCGTGTTC TTTGTGCAATATTCT TERM 796 1473599 - 1473623 + T 70 -7.8 -4.08279 | overlap 1473596 GCGAGCATCAATGGA TACGCTGCCG GCTAG CGGTGGCGTG TTCTTTGTGCAATAT TERM 797 1475690 - 1475679 - T 72 -2.2 -4.7254 | overlap 1475684 ACTGTTTACTAAAAA CACA GGTC CGTG CGAAGTCGCAAGACG TERM 798 1477012 - 1477051 + T 100 -21 -4.05033 | opp_overlap 1477014 1477022, overlap 1477022 TAGGACACCGCCGAA CATACAAAAACACCCCCG GTAA CGGTGGTGTTTTTGTATG TTTATATCGACTCAG TERM 799 1477049 - 1477014 - T 90 -17.8 -3.03771 | opp_overlap 1477012 1477022, overlap 1477022 GGACACCGCCGAACA TACAAAAACACCCCCG GTAA CGGTGGTGTTTTTGTA TGTTTATATCGACTC TERM 800 1477041 - 1477022 - T 100 -9.2 -5.10064 | opp_overlap 1477012 1477022, overlap 1477014 CCGAACATACAAAAA CACCCCCG GTAA CGGTGGTG TTTTTGTATGTTTAT TERM 801 1477022 - 1477041 + T 100 -9.2 -5.1634 | opp_overlap 1477022 1477014, overlap 1477012 CCGAACATACAAAAA CACCCCCG GTAA CGGTGGTG TTTTTGTATGTTTAT ogt 1477631 - 1477134 - | methylated-DNA--protein-cysteine methyltransferase alkA 1479118 - 1477628 - | bifunctional methylated-DNA--protein-cysteine methyltransferase/O-6-methylguanine-DNA transcription regulator Rv1318c 1480824 - 1479199 - | adenylate cyclase TERM 802 1479455 - 1479494 + g 77 -9.8 -3.90112 | opp_overlap 1479453 TTGCCGGCAATGACC TGCCCCGCCGCCACGCCG ATCC CGGCCTGGCACTCGGGCA TTTCGTTGACCAGCC Rv1319c 1482501 - 1480894 - | adenylate cyclase TERM 803 1482465 - 1482487 + g 77 -6.8 -4.57073 | overlap 1482464 1482468 TCGTCTCGAGTGCCT GGCCCAGGCG TTG CGCCATGGTC TTTTTCGCCGGCATG Rv1320c 1484217 - 1482514 - | adenylate cyclase Rv1321 1484279 - 1484959 + | hypothetical protein TERM 804 1485017 - 1485000 - g 74 -12.7 -3.53012 | GCTCGGCGCCGCAAA CCGCTGC ACCG GCAGCGG CCGGAACCGCCGTCG Rv1322 1484982 - 1485278 + | hypothetical protein Rv1322A 1485771 - 1485313 - | hypothetical protein TERM 805 1486657 - 1486641 - g 77 -7.9 -4.36411 | overlap 1486643 1486652 CATGAACCAGGAAAA GGCCCAG GAA CTGGGGC TGACCTGGCTAGCCG fadA4 1485862 - 1487031 + | acetyl-CoA acetyltransferase Rv1324 1487161 - 1488075 + | thioredoxin TERM 806 1488094 - 1488135 + T 100 -30.5 -2.79183 | opp_overlap 1488094 1488101, overlap 1488101 CGGCTGGCGAGCAGA CGCAGAATCGCCTAAACCC GCAC GGGTTTAGGCGATTCTGCG TCTGCTCGCGCTGGG TERM 807 1488135 - 1488094 - T 100 -30.5 -2.78384 | opp_overlap 1488094 1488101, overlap 1488101 CGGCTGGCGAGCAGA CGCAGAATCGCCTAAACCC GCAC GGGTTTAGGCGATTCTGCG TCTGCTCGCGCTGGG TERM 808 1488101 - 1488128 + T 95 -18.6 -3.40299 | opp_overlap 1488094 1488101, overlap 1488094 CGAGCAGACGCAGAA TCGCCTAAACCC GCAC GGGTTTAGGCGA TTCTGCGTCTGCTCG TERM 809 1488128 - 1488101 - T 95 -18.6 -3.40299 | opp_overlap 1488101 1488094, overlap 1488094 CGAGCAGACGCAGAA TCGCCTAAACCC GCAC GGGTTTAGGCGA TTCTGCGTCTGCTCG PE_PGRS24 1489965 - 1488154 - | PE-PGRS family protein glgB 1492312 - 1490117 - | glycogen branching enzyme glgE 1494425 - 1492320 - | glucanase GLGE glgP 1494564 - 1497155 + | glycogen phosphorylase GlgP TERM 810 1497212 - 1497167 - T 91 -17.2 -3.29511 | gap 1, opp_overlap 1497169 1497176, overlap 1497176 CTGACCCGCCGAGAA GACGCAAAAGCTC-CTAAATC TGGCC GATTTAGTGGGCTTTTGCGTC TGCTCGCGCAAGGCG TERM 811 1497169 - 1497210 + T 81 -16.2 -2.78384 | gap 1, opp_overlap 1497167 1497176, overlap 1497176 GACCCGCCGAGAAGA CGCAAAAGCTC-CTAAATC TGGCC GATTTAGTGGGCTTTTGCG TCTGCTCGCGCAAGG TERM 812 1497176 - 1497203 + T 71 -5.7 -4.24948 | gap 1, opp_overlap 1497167 1497176, overlap 1497169 CGAGAAGACGCAAAA GCTC-CTAAATC TGGCC GATTTAGTGGGC TTTTGCGTCTGCTCG dinG 1499189 - 1497195 - | ATP-dependent helicase DING TERM 813 1497455 - 1497429 - G 72 -13.6 -3.15544 | GGCGACCGTCATGAA GCCGTTGCCGCC ACG GGCGGCCACCGC ACGCTGGCGGGCACT Rv1330c 1500559 - 1499213 - | nicotinate phosphoribosyltransferase TERM 814 1499413 - 1499395 - G 71 -13.8 -2.82623 | overlap 1499392 GCGGCTCGACAATGA CCGGCGGA CGG CCCGCCGG ATGCACGAGCTCCTC clpS 1500661 - 1500966 + | ATP-dependent Clp protease adaptor protein ClpS Rv1332 1500926 - 1501582 + | transcriptional regulatory protein TERM 815 1501970 - 1501984 + G 75 -11.4 -3.66803 | overlap 1501951 1501980 CGGCGGCTGGAATTG TCGGCC GAC GGCCGA TTTCGGCTATTCGGC Rv1333 1501599 - 1502633 + | hydrolase Rv1334 1502641 - 1503081 + | hypothetical protein Rv1335 1503103 - 1503384 + | 9.5 kDa culture filtrate antigen CFP10A cysM 1503394 - 1504365 + | cysteine synthase B CysM TERM 816 1504684 - 1504697 + G 75 -9.5 -4.03234 | TTCTTATGACGCTGG CCGGG CTGT CCCGG TTTGTCTGGGCCACC Rv1337 1504356 - 1505078 + | integral membrane protein murI 1505075 - 1505890 + | glutamate racemase TERM 817 1506477 - 1506502 + G 77 -7.6 -4.34402 | gap 1 CATTTGTGACCAGCT CGTCGA-GCTG GCTCG CGGCGTCGACG TTTTCCTCTGCGAGG Rv1339 1505917 - 1506738 + | hypothetical protein rph 1506755 - 1507534 + | ribonuclease PH Rv1341 1507573 - 1508187 + | putative deoxyribonucleotide triphosphate pyrophosphatase TERM 818 1508201 - 1508189 - T 70 -10.5 -3.63627 | opp_overlap 1508189 1508188 1508182 1508180 TGGCGACAGGCTAAA GCCCG AAG CGGGC CTTGATCTCTTTGGT Rv1342c 1508546 - 1508184 - | hypothetical protein lprD 1508923 - 1508543 - | lipoprotein LprD Rv1344 1508968 - 1509288 + | acyl carrier protein fadD33 1509281 - 1510846 + | acyl-CoA synthetase fadE14 1510846 - 1512006 + | acyl-CoA dehydrogenase Rv1347c 1512605 - 1511973 - | hypothetical protein Rv1348 1513047 - 1515626 + | drugs-transport transmembrane ATP-binding protein ABC transporter TERM 819 1516026 - 1516067 + G 77 -15.9 -3.05521 | gap 1 ATCTGGTGACACCGT TGACCAGCGCGATC-CTGCT GCC GGCAGTGATCGCGCTGGCCC TGTTGCCGATCTCCT Rv1349 1515623 - 1517362 + | drugs-transport transmembrane ATP-binding protein ABC transporter fabG 1517491 - 1518234 + | 3-ketoacyl-(acyl-carrier-protein) reductase Rv1351 1518231 - 1518560 + | hypothetical protein Rv1352 1518763 - 1519134 + | hypothetical protein Rv1353c 1519985 - 1519200 - | transcriptional regulatory protein Rv1354c 1521876 - 1520005 - | hypothetical protein TERM 820 1520706 - 1520659 - G 76 -14.8 -3.20382 | overlap 1520662 GGCCACAGGGATGAA GCAGCCCGGTGCCAGCAGCCCA CGGG TGGGGTGCTGCCACCGGACCAA TGCCTCGGTCCCGAC TERM 821 1520703 - 1520662 - G 100 -20.9 -2.79574 | overlap 1520659 CACAGGGATGAAGCA GCCCGGTGCCAGCAGCCCA CGGG TGGGGTGCTGCCACCGGAC CAATGCCTCGGTCCC moeY 1524032 - 1521885 - | hypothetical protein Rv1356c 1524820 - 1524029 - | hypothetical protein TERM 822 1525021 - 1524979 - R 78 -12 -3.75461 | CAAATTGTCACGAAA TCGTGCGCACGCGCGT TCACAAATACC ACGCGCACGCGCTCGA AAACTACATGACCAG Rv1357c 1526216 - 1525293 - | hypothetical protein TERM 823 1528163 - 1528177 + G 71 -9.2 -3.88583 | opp_overlap 1528151 GAACGGATCCTGTTC CGCCGC CTT GCGGTG TTTGTGGGCGGTTTC TERM 824 1528198 - 1528251 + G 84 -16.8 -3.14136 | gap 2, opp_overlap 1528214, overlap 1528200 1528214 GGGCGGTTTCGACCT CACCGCGGCGAGCGAAGTCGCCGCCG CCGG CGGCGACGACTTCG-TCGA-GCGGTA TTCAGTGCTTGATCA TERM 825 1528200 - 1528249 + G 100 -19.4 -3.12862 | gap 2, opp_overlap 1528214, overlap 1528198 1528214 GCGGTTTCGACCTCA CCGCGGCGAGCGAAGTCGCCGCCG CCGG CGGCGACGACTTCG-TCGA-GCGG TATTCAGTGCTTGAT TERM 826 1528214 - 1528237 + G 73 -13.8 -3.14683 | opp_overlap 1528214, overlap 1528200 1528198 ACCGCGGCGAGCGAA GTCGCCGCCG CCGG CGGCGACGAC TTCGTCGAGCGGTAT TERM 827 1528234 - 1528214 - g 86 -18.3 -3.05463 | opp_overlap 1528214 1528200 1528198 ACCGCGGCGAGCGAA GTCGCCGCC GCC GGCGGCGAC GACTTCGTCGAGCGG Rv1358 1526612 - 1530091 + | transcriptional regulatory protein TERM 828 1530103 - 1530070 - f 74 -14.6 -2.63631 | CCAACTTGTACAGGA GGCCGCGCAACACT CGACCT AGGATTGCGCGGCC AGCGCAGGCCCGGAG Rv1359 1530173 - 1530925 + | transcriptional regulatory protein TERM 829 1531076 - 1531034 - f 84 -16.2 -3.08371 | GACATTCGCAAGAGA GCGTGCTCGCCCACTCCCTG CGG CAAGGTGTAGGCCAGCTCGC GCAACTTAACCGCGC Rv1360 1531348 - 1532370 + | oxidoreductase PPE19 1533633 - 1532443 - | PPE family protein TERM 830 1532779 - 1532735 - G 79 -13.6 -3.66844 | gap 1, overlap 1532739 CCCAGACCCGAAGAA CCCAGCGACGAACCCAGCTGG CTGC CCAGC-GAGCTCATCGCCTGG ACCCCGTTTTGCGCC TERM 831 1533847 - 1533823 - R 76 -9.2 -3.97019 | opp_overlap 1533823 1533822 1533840 ACTAATCTTAAATAA CCCGGCCGAT TAGAC AGCGGCCGAG ATCTGTTTGAGGTCG Rv1362c 1534610 - 1533948 - | hypothetical protein TERM 832 1534121 - 1534135 + g 72 -7.1 -4.21676 | ACACGGCCGCGCGCA CCACC TTGGC GGTGG TTTTCAGTGACTTCT Rv1363c 1535392 - 1534607 - | hypothetical protein Rv1364c 1537644 - 1535683 - | hypothetical protein TERM 833 1537602 - 1537616 + g 75 -7 -4.38712 | TGCGTCGTACATCCT CGGCCG CAC CGACCG TTTTGTCCCAGTCCA rsfA 1538169 - 1537783 - | anti-anti-sigma factor RSFA (anti-sigma factor antagonist) (regulator of sigma F A) Rv1366 1538390 - 1539211 + | hypothetical protein Rv1367c 1540645 - 1539512 - | hypothetical protein TERM 834 1539995 - 1539962 - G 89 -18.1 -3.40403 | opp_overlap 1539980 1539983, overlap 1539932 1539983 GGCGGTCGACCACAA CCCGCCGCCGGCGTT ACAG AACGACGGCGGCGTG ACGTGTGGCGGCCCC TERM 835 1539980 - 1540033 + g 70 -10.2 -3.71848 | gap 1, opp_overlap 1539962 1539983, overlap 1539983 GCCGCCGGCGTTACA GAACGACGGCGGCGTGACGTG-TGG CGGCC CCATCACGTCGTGCCGCAACCGGTC TTGTTCGTCGAGCCG TERM 836 1541188 - 1541146 - g 87 -6.9 -5.00616 | gap 2 GGGTGCGGGAAAAAA CCGACCACGGCGAGCTCCCCG AGT CCCGG-G-TCGCCGTCGCCGG AAGCCCAGCAGATCC lprF 1541020 - 1541805 + | lipoprotein LprF Rv1369c 1542878 - 1541994 - | transposase Rv1370c 1543255 - 1542929 - | transposase Rv1371 1543359 - 1544828 + | hypothetical protein TERM 837 1545065 - 1545050 - g 74 -2.4 -4.72272 | overlap 1545051 1545052 CGGGTGTATCAAAAA TCGCGG ATCA CCACGC GCCGGATGGCGGTCG Rv1372 1544825 - 1546006 + | hypothetical protein Rv1373 1546012 - 1546992 + | glycolipid sulfotransferase Rv1374c 1547530 - 1547072 - | hypothetical protein TERM 838 1547800 - 1547810 + H 71 -5.4 -4.41348 | opp_overlap 1547794 GAAAGCCAAGCGCTC TACG CCG CGTA TTTCTTTGCGGCCGA Rv1375 1547832 - 1549151 + | hypothetical protein Rv1377c 1551217 - 1550579 - | putative transferase Rv1376 1549148 - 1550641 + | hypothetical protein Rv1378c 1552655 - 1551228 - | hypothetical protein pyrR 1552654 - 1553235 + | pyrimidine regulatory protein PyrR pyrB 1553232 - 1554191 + | aspartate carbamoyltransferase catalytic subunit pyrC 1554188 - 1555480 + | dihydroorotase Rv1382 1555477 - 1555974 + | export or membrane protein carA 1555971 - 1557101 + | carbamoyl phosphate synthase small subunit carB 1557101 - 1560448 + | carbamoyl phosphate synthase large subunit pyrF 1560445 - 1561269 + | orotidine 5'-phosphate decarboxylase TERM 839 1561532 - 1561562 + G 90 -15.3 -3.86015 | AGCAGTGACCGCTCG CCTGGCCGCCGCG CACGC CGCGGCGGCCCCG TTTATCGCGGCGGTC PE15 1561464 - 1561772 + | PE family protein TERM 840 1562132 - 1562145 + G 74 -5.3 -4.44046 | ATCAAGCTCGCGGTG TTGGT AGCG ACCAA TTTCTTTGGCATCAA TERM 841 1562526 - 1562539 + G 87 -6.7 -5.03715 | CGATCTGGTGGCTGG CTCGA GGCC TCGAG TTTTTTCAGGATGGT TERM 842 1562888 - 1562946 + G 86 -16.6 -3.55622 | gap 3 CTCCCCGCCTCAGCA CCCG-CACCGGCGGCAGC-GGCCGGC-GC CACC GCAGCCGGCCCGACGCCGCCGGCGACTGG TTTCGGAGGCTTCCC TERM 843 1563126 - 1563165 + G 89 -17.2 -3.53012 | opp_overlap 1563128, overlap 1563130 GCTCGGCGGCGAAGG CACGTGGCCATCGTGACG AATT CGTCACGATGGACATGGG TTTCGACGCGGCAGC TERM 844 1563163 - 1563128 - g 77 -16.2 -2.52464 | opp_overlap 1563126 1563130 TCGGCGGCGAAGGCA CGTGGCCATCGTGACG AATT CGTCACGATGGACATG GGTTTCGACGCGGCA TERM 845 1563130 - 1563161 + G 80 -17.4 -2.64155 | opp_overlap 1563128, overlap 1563126 GGCGGCGAAGGCACG TGGCCATCGTGACG AATT CGTCACGATGGACA TGGGTTTCGACGCGG PPE20 1561769 - 1563388 + | PPE family protein mihF 1563694 - 1564266 + | putative integration host factor MIHF TERM 846 1564732 - 1564675 - g 100 -24 -3.89614 | opp_overlap 1564687 1564712 1564731, overlap 1564676 TGGAATGGGCAGAAA TCCACGGCGGCCTGCACCGGTCGGGC ACTTTG GCCCAGCCGGTGCGGGCGGCCGCGGC GACTGGTGTGCCGGT TERM 847 1564731 - 1564676 - g 100 -27.5 -2.93447 | opp_overlap 1564687 1564712, overlap 1564675 GGAATGGGCAGAAAT CCACGGCGGCCTGCACCGGTCGGGC ACTTTG GCCCAGCCGGTGCGGGCGGCCGCGG CGACTGGTGTGCCGG gmk 1564401 - 1565027 + | guanylate kinase rpoZ 1565093 - 1565425 + | DNA-directed RNA polymerase subunit omega dfp 1565441 - 1566697 + | bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase metK 1566825 - 1568036 + | S-adenosylmethionine synthetase TERM 848 1568056 - 1568097 + T 100 -31.9 -2.78816 | opp_overlap 1568056 1568063, overlap 1568063 GAGGGCGCGAGCAGA CGCAGAATCGCACGCGGAA AGGC TTCCGCGTGCGATTCTGCG TCTGCTCGGCGCTAG TERM 849 1568097 - 1568056 - T 100 -31.9 -2.78596 | opp_overlap 1568056 1568063, overlap 1568063 GAGGGCGCGAGCAGA CGCAGAATCGCACGCGGAA AGGC TTCCGCGTGCGATTCTGCG TCTGCTCGGCGCTAG TERM 850 1568063 - 1568090 + T 100 -20 -3.40299 | opp_overlap 1568056 1568063, overlap 1568056 CGAGCAGACGCAGAA TCGCACGCGGAA AGGC TTCCGCGTGCGA TTCTGCGTCTGCTCG TERM 851 1568090 - 1568063 - T 100 -20 -3.40299 | opp_overlap 1568063 1568056, overlap 1568056 CGAGCAGACGCAGAA TCGCACGCGGAA AGGC TTCCGCGTGCGA TTCTGCGTCTGCTCG Rv1393c 1569587 - 1568109 - | monoxygenase cyp132 1570969 - 1569584 - | cytochrome P450 132 TERM 852 1569840 - 1569812 - G 83 -8.7 -4.62069 | overlap 1569831 GGGGCACCGCAAAAA CCGGCCAGGATCG AAT CTATCCGGGTCGG GCCACCAGCGCGGGT Rv1395 1571047 - 1572081 + | transcriptional regulatory protein PE_PGRS25 1573857 - 1572127 - | PE-PGRS family protein TERM 853 1573251 - 1573207 - G 89 -17.7 -3.28712 | overlap 1573208 1573247 TCCGCTGCCCCACAA TCCGGCGGCGCCGCCGGCACC GCC GGCACCGCCGACACCACCGGG GTCGCCGGCCACCCC TERM 854 1573250 - 1573208 - G 100 -21.2 -2.57132 | overlap 1573207 1573247 CCGCTGCCCCACAAT CCGGCGGCGCCGCCGGCACC GCC GGCACCGCCGACACCACCGG GGTCGCCGGCCACCC Rv1397c 1574513 - 1574112 - | hypothetical protein Rv1398c 1574767 - 1574510 - | hypothetical protein lipH 1575809 - 1574850 - | lipase LipH lipI 1576796 - 1575834 - | lipase LipH TERM 855 1576255 - 1576241 - G 79 -11.4 -3.83347 | ACAGCTGAAACACAA TGGGCG GGC CGCCCA TATCGCGGGCTCGCT Rv1401 1576930 - 1577532 + | hypothetical protein TERM 856 1578023 - 1578045 + G 74 -12.6 -3.53444 | CCTGGCCGCGCTGGC CGACTCGCGC GCT GCGCGGGCCG TTTGGCAGGCGCTAC priA 1577613 - 1579580 + | primosome assembly protein PriA Rv1403c 1580422 - 1579598 - | putative methyltransferase Rv1404 1580591 - 1581073 + | transcriptional regulatory protein TERM 857 1581078 - 1581103 + T 71 -12.5 -3.09516 | gap 1, opp_overlap 1581070 1581067 AAATCGAGTAGCTAG CGGCCGAGCCCG TGT CGGGC-CGTCCG TTACGTGCTGGGACG Rv1405c 1581969 - 1581145 - | putative methyltransferase fmt 1582166 - 1583104 + | methionyl-tRNA formyltransferase fmu 1583101 - 1584474 + | Fmu protein (SUN protein) rpe 1584499 - 1585197 + | ribulose-phosphate 3-epimerase TERM 858 1585296 - 1585284 - g 85 -10.5 -4.20084 | ACGACTTATCCAAAA CCCCC AGT GGGGG CCGTCATTGTGGATC ribG 1585194 - 1586213 + | bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino) uracil reductase Rv1410c 1587766 - 1586210 - | aminoglycosides/tetracycline-transport integral membrane protein lprG 1588482 - 1587772 - | lipoprotein LprG ribC 1588567 - 1589172 + | riboflavin synthase subunit alpha Rv1413 1589386 - 1589901 + | hypothetical protein Rv1414 1589891 - 1590292 + | hypothetical protein ribA2 1590397 - 1591674 + | bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein ribH 1591689 - 1592153 + | riboflavin synthase subunit beta Rv1417 1592150 - 1592614 + | hypothetical protein lprH 1592639 - 1593325 + | lipoprotein LprH Rv1419 1593505 - 1593978 + | hypothetical protein uvrC 1594042 - 1595982 + | excinuclease ABC subunit C Rv1421 1595979 - 1596884 + | hypothetical protein Rv1422 1596881 - 1597909 + | hypothetical protein TERM 859 1598594 - 1598642 + G 100 -21 -2.53382 | gap 2 TCGACGACGCCAATC TGCGCCGCTCGGCGCGGGCCGCGG TTG CCGCGGC-CGC-CCGGGTGGAGCG TGCCTTGGAGATCCT whiA 1597906 - 1598883 + | transcriptional regulatory protein WHIA Rv1424c 1599654 - 1598893 - | hypothetical protein TERM 860 1599874 - 1599900 + G 70 -10.8 -3.59979 | GACCGGCCGTGGTTC GTCGAGGACGAG GAA CTCGACATCGAC TTTCACATCCGCCGC Rv1425 1599658 - 1601037 + | hypothetical protein lipO 1602321 - 1601059 - | esterase LipO TERM 861 1601574 - 1601596 + g 77 -7.6 -4.4078 | overlap 1601576 TGGCAACGAAATTCG GATCCCCGCC GTA GGCGGCGATG TTTTCCTTGACCCAC TERM 862 1601576 - 1601594 + g 74 -10.2 -3.8125 | overlap 1601574 GCAACGAAATTCGGA TCCCCGCC GTA GGCGGCGA TGTTTTCCTTGACCC fadD12 1603928 - 1602321 - | acyl-CoA synthetase TERM 863 1602999 - 1603023 + g 75 -11.4 -3.63627 | opp_overlap 1602982 CGACGCGGCGGCGAA CCGCAACGAC CGGCC GTCGTAGCGG TTTCGAATCTCGGCC Rv1428c 1604759 - 1603932 - | hypothetical protein TERM 864 1605773 - 1605811 + G 79 -11.7 -3.80133 | gap 2, opp_overlap 1605753 1605751, overlap 1605791 1605791 AACGAGTGAAGGCGT TGGCCCTGGCCGGTGGCGC CCG GC-CCGGCGGCC-GGGTCA TGTTTTATGACGATG TERM 865 1605791 - 1605813 + G 75 -6.8 -4.39426 | overlap 1605773 1605791 CCCTGGCCGGTGGCG CCCGGCCCGG CGG CCGGGTCATG TTTTATGACGATGTC TERM 866 1605791 - 1605808 + G 72 -14.1 -2.98387 | overlap 1605773 1605791 CCCTGGCCGGTGGCG CCCGGCC CGGC GGCCGGG TCATGTTTTATGACG Rv1429 1604878 - 1606146 + | hypothetical protein TERM 867 1606313 - 1606276 - f 78 -10.5 -3.97834 | gap 1, overlap 1606264 1606277 1606280 CAACCCGACCAGAAA GCCAGCCGGGTCCGCC AGAGGGG GGCGGACCCGGC-GTA TACCCAATTCGCGTC TERM 868 1606312 - 1606277 - f 75 -14 -2.98219 | gap 1, overlap 1606264 1606276 1606280 AACCCGACCAGAAAG CCAGCCGGGTCCGCC AGAGGGG GGCGGACCCGGC-GT ATACCCAATTCGCGT TERM 869 1606310 - 1606280 - f 91 -21.2 -2.72152 | overlap 1606264 1606277 1606276 CCGACCAGAAAGCCA GCCGGGTCCGCC AGAGGGG GGCGGACCCGGC GTATACCCAATTCGC PE16 1606386 - 1607972 + | PE family protein TERM 870 1608719 - 1608748 + G 89 -5.7 -5.15969 | CTTGCCGCCCGCGGC GAACACTACTGGC TGAA GCTATTCGTGTTC TTTTTTCCCTTCACC Rv1431 1608083 - 1609852 + | hypothetical protein Rv1432 1609849 - 1611270 + | dehydrogenase Rv1433 1611434 - 1612249 + | hypothetical protein Rv1435c 1612950 - 1612342 - | proline, glycine, valine-rich secreted protein Rv1434 1612256 - 1612393 + | hypothetical protein TERM 871 1612412 - 1612386 - Gf 72 -12.2 -3.30619 | AAGGACCGGGCAGAA CCGGCTGACCAG GCA CCGGTCCGCCAG CTGGCGCCGGATCGG gap 1613307 - 1614326 + | glyceraldehyde-3-phosphate dehydrogenase pgk 1614329 - 1615567 + | phosphoglycerate kinase TERM 872 1616266 - 1616232 - g 79 -7 -4.66833 | overlap 1616234 GGTGAACGCCAAAAA CGTCGGCGACATCGTG GCC CAGGATGACGTCGATG GTGGCCTGGTCGGCG tpiA 1615564 - 1616349 + | triosephosphate isomerase Rv1439c 1617386 - 1616961 - | hypothetical protein secG 1617837 - 1618070 + | preprotein translocase subunit SecG PE_PGRS26 1619684 - 1618209 - | PE-PGRS family protein TERM 873 1618511 - 1618467 - G 79 -16.2 -2.87344 | GAGGCTTTCGATATA GCCGCCGGTGCCGCCGGTGC CGCCT GCGCCGCCAGCGCCGCCGGC GCCGGCGCTGCTGCC TERM 874 1619574 - 1619526 - G 75 -7.2 -4.33182 | opp_overlap 1619554, overlap 1619523 1619527 GTAGCCAGAAAACAA CGACGCGATGGCCGCCGACACC TCATC GGCCCCGGCGGCCAGGACACCA GCCGTCGTGGGTGCC bisC 1619791 - 1622091 + | biotin sulfoxide reductase Rv1443c 1622692 - 1622207 - | hypothetical protein TERM 875 1622612 - 1622652 + g 75 -11.7 -3.6715 | overlap 1622614 GCCCTCCGGGGTGAC GACCCGTTGCCACACCTGC TCG GCAGGTGCGGCGACGACGC TTTGCCGTTCAATGA TERM 876 1623014 - 1623039 + r 76 -6.1 -4.55689 | gap 1, overlap 1622989 1622987 1623014 1623015 1623017 AGCTACTGATTCCGC G-CAGCTGCTCT GTC AGGGCCGCTGAC TTTTCTCTCGGTCAT Rv1444c 1623697 - 1623287 - | hypothetical protein devB 1624457 - 1623714 - | 6-phosphogluconolactonase TERM 877 1623848 - 1623800 - G 70 -10.3 -3.64703 | gap 3 CCGCCGGTACCGAAA CCGGAT-CGG-CGCCGCCGATGGC CGCG GCCA-CGGCGTCGGCCTTACCCGG CCCGGAAACCAGCAG opcA 1625365 - 1624454 - | putative OXPP cycle protein OPCA TERM 878 1625119 - 1625090 - G 73 -9.1 -3.99324 | opp_overlap 1625092 1625117 CCGCAGCACCACAAA CTCGCCGGCGCCG GCGT CAGCGCCGACCCG CAGTTGTGCGTCCAG zwf2 1626962 - 1625418 - | glucose-6-phosphate 1-dehydrogenase tal 1628080 - 1626959 - | transaldolase TERM 879 1627479 - 1627469 - G 75 -3.2 -4.8048 | CCGGGAGACGAAAAA CGAT GCC ACCG AATGGATCTTGGACA tkt 1630199 - 1628097 - | transketolase TERM 880 1629038 - 1629018 - G 71 -12.5 -3.30159 | opp_overlap 1628986 CGAACCGCCCCACAA CTCGGGCAG TTT CGGCCCGAG CGCGGACAGCACCGC PE_PGRS27 1634627 - 1630638 - | PE-PGRS family protein TERM 881 1630960 - 1630999 + g 84 -17 -3.09492 | TGAGAGCCGTTGTGG CCGGTGCCGCCGGTGCCG CCAG CGCCGCCGGTGCCGCCGG TGTTACCGTTGCCGC TERM 882 1631790 - 1631834 + g 80 -15.6 -3.28712 | gap 1 GCCGTTGCCGCCGGC CCCGCCGTTGCC-GCCGGCGC CGCC GTGCCCGCCGGCACCGCCGGG TTGTCCGGGCGCACC TERM 883 1633343 - 1633297 - G 75 -13.7 -3.28712 | gap 2, overlap 1633298 GGGTCGCCGCCAGAA GGCGGGGCACCGGGGGCGCCG TTGCCGC CGGCACCTCCGGCG-CC-GCC ATTGCCGACCAGCCC TERM 884 1633499 - 1633539 + g 100 -20.3 -3.28712 | TCGTGGAGCCGGCTC CGCCGGTGCCTCCGGCCCC GCC GGCGCCGGGGTCACCGCCG TTATCCCCAGCGACA TERM 885 1633586 - 1633572 - G 77 -7 -4.48741 | overlap 1633573 CAAGGCACGAGAAAA TCCGGC CCC GCCGGC CCCGCCGGTCCCGCC TERM 886 1634186 - 1634133 - G 100 -19.4 -3.61398 | gap 1, overlap 1634134 GCCGGTGCCGAACAA CCCGGCGGCCCCGCCG-GCCCCGCC GACTT GGCCGGGCGCGCCCGAGCCGCCGGC CCCACCGTTGCCCCA TERM 887 1634185 - 1634134 - G 100 -22.9 -2.76696 | gap 1, overlap 1634133 CCGGTGCCGAACAAC CCGGCGGCCCCGCCG-GCCCCGCC GACTT GGCCGGGCGCGCCCGAGCCGCCGG CCCCACCGTTGCCCC ctaB 1635029 - 1635955 + | protoheme IX farnesyltransferase PE_PGRS28 1638229 - 1636004 - | PE-PGRS family protein TERM 888 1636260 - 1636311 + g 79 -16.4 -2.87931 | overlap 1636262 CTGGCGCCGGTGCCG CCGGGTGCAACGGCGTTGGCGCCG TTAC CGCCGTTGCCGCCTTTGCCCCCGG TGTCTGCAAAGTCGG TERM 889 1636262 - 1636300 + g 72 -11.6 -3.54129 | overlap 1636260 GGCGCCGGTGCCGCC GGGTGCAACGGCGTTGGC GCC GTTACCGCCGTTGCCGCC TTTGCCCCCGGTGTC TERM 890 1637188 - 1637174 - G 77 -7 -4.48741 | overlap 1637175 CAAGGCACGAGAAAA TCCGGC CCC GCCGGC CCCGCCGGTCCCGCC TERM 891 1637788 - 1637735 - G 100 -19.4 -3.61398 | gap 1, overlap 1637736 GCCGGTGCCGAACAA CCCGGCGGCCCCGCCG-GCCCCGCC GACTT GGCCGGGCGCGCCCGAGCCGCCGGC CCCACCGTTGCCCCA TERM 892 1637787 - 1637736 - G 100 -22.9 -2.76696 | gap 1, overlap 1637735 CCGGTGCCGAACAAC CCGGCGGCCCCGCCG-GCCCCGCC GACTT GGCCGGGCGCGCCCGAGCCGCCGG CCCCACCGTTGCCCC Rv1453 1638381 - 1639646 + | transcriptional activator protein qor 1640660 - 1639674 - | quinone reductase Rv1456c 1642425 - 1641493 - | unidentified antibiotic-transport integral membrane ABC transporter Rv1455 1640680 - 1641543 + | hypothetical protein TERM 893 1642444 - 1642432 - TR 81 -6.3 -4.77157 | GTAAGGCACCAAAAA CTACA CGC TGTAG TACGGGCGGACCGGT TERM 894 1642513 - 1642467 - TR 83 -14.5 -3.53444 | gap 1, opp_overlap 1642476 1642482 GGACCGGTGTCGAAA CTGCAACCACGCAC-CGATGCG TCGG CGTGTCTTGTGCGTGGTTGCAG TGTCGCGAAGCCGGG Rv1457c 1643322 - 1642537 - | unidentified antibiotic-transport integral membrane ABC transporter Rv1458c 1644260 - 1643319 - | unidentified antibiotic-transport ATP-binding protein ABC transporter Rv1459c 1646138 - 1644363 - | integral membrane protein Rv1460 1646186 - 1646992 + | transcriptional regulatory protein Rv1461 1646989 - 1649529 + | hypothetical protein Rv1462 1649526 - 1650719 + | hypothetical protein Rv1463 1650716 - 1651516 + | ABC transporter ATP-binding protein TERM 895 1651838 - 1651811 - g 75 -2.7 -4.72272 | gap 1, opp_overlap 1651814 GGTGTTCACCAAAAA TGCCACCGAGGC GCTCA ACCT-GGTGTCA TATGTGCTGGGGGAC csd 1651518 - 1652771 + | cysteine desulfurase Rv1465 1652768 - 1653256 + | nitrogen fixation related protein Rv1466 1653231 - 1653578 + | hypothetical protein fadE15 1655502 - 1653673 - | acyl-CoA dehydrogenase FADE15 PE_PGRS29 1656721 - 1655609 - | PE-PGRS family protein TERM 896 1656001 - 1655951 - G 70 -11.7 -3.36273 | gap 1 GTCGCCGAACAGGAA GGCCCTGCCGCCGGC-GCCACCTC CGCC GAGGAAGCTGCTGGCGCCAGCACC GCCGTTGCCAAAAAA TERM 897 1656130 - 1656094 - G 70 -13.6 -3.01712 | gap 1, opp_overlap 1656096, overlap 1656097 CGCCGGCCCCGAAGA GCACGGCGGAGCCGCCG ATGC CGCCGGCACCGCCGC-C ACCGCCGCTATTGCC TERM 898 1656096 - 1656138 + g 74 -14.6 -3.01712 | opp_overlap 1656094 1656097 CCGGCCCCGAAGAGC ACGGCGGAGCCGCCGATGCC GCC GGCACCGCCGCCACCGCCGC TATTGCCGCCGGCCC TERM 899 1656137 - 1656097 - G 95 -20.3 -2.73875 | opp_overlap 1656096, overlap 1656094 CGGCCCCGAAGAGCA CGGCGGAGCCGCCGATGCC GCC GGCACCGCCGCCACCGCCG CTATTGCCGCCGGCC TERM 900 1656611 - 1656563 - G 74 -12.2 -3.61398 | opp_overlap 1656601 GTGCGCGCCGAACAA CGCCGCGACCGCCGCCGACACC TCATC GGCGCCTGCGGCCGCGACAGCG GTCGTCTGGGCCGCC TERM 901 1658795 - 1658808 + G 70 -2.3 -4.57569 | CTTCATCGCCGTCCT GGTGC TGTG GGACC TTTTTGGGCAGCTGC ctpD 1656963 - 1658936 + | cation transporter P-type ATPase D trxA 1658980 - 1659354 + | thioredoxin TRXA TERM 902 1659534 - 1659508 - g 77 -7.2 -4.57073 | overlap 1659510 GAGTCGTCGGAAAAA CACCCCGACGTG GTG CACGCCAAGGTC GACACCGAAGCCGAA TERM 903 1659532 - 1659510 - g 77 -9.8 -3.90048 | overlap 1659508 GTCGTCGGAAAAACA CCCCGACGTG GTG CACGCCAAGG TCGACACCGAAGCCG trxB1 1659370 - 1659741 + | thioredoxin TRXB1 TERM 904 1659766 - 1659736 - f 73 -11.1 -3.65046 | GGGCGAGCCCAACAA GC-CTGACCGGGCGC CAG GCGCCCGG-CTGTGC CCCACCGCTGCGCGG echA12 1659763 - 1660620 + | enoyl-CoA hydratase Rv1473 1660656 - 1662284 + | macrolide ABC transporter ATP-binding protein TERM 905 1662531 - 1662568 + G 73 -14.1 -3.14881 | gap 1, overlap 1662539 TCAGGCACCACGATG CGCGGCCGCG-GCGGC CCCAATC GCCGTTCCCGGCCGCG TTGATCCGCCGATTG Rv1473A 1662381 - 1662572 + | transcriptional regulatory protein Rv1474c 1663204 - 1662641 - | transcriptional regulatory protein TERM 906 1663176 - 1663140 - G 72 -11.6 -3.51708 | gap 2, overlap 1663136 TATTCGGCAAAGCAA CGGCGCG-CACCGTC-GA GGA TCTGACGGCGGCGAGCCG CCAGATGGTCCTCGC acn 1666046 - 1663215 - | aconitate hydratase Rv1476 1666204 - 1666764 + | hypothetical protein Rv1477 1666990 - 1668408 + | invasion protein Rv1478 1668419 - 1669144 + | invasion protein moxR1 1669283 - 1670416 + | transcriptional regulatory protein MOXR1 Rv1480 1670413 - 1671366 + | hypothetical protein TERM 907 1671946 - 1671997 + G 71 -12.1 -3.28712 | overlap 1671948 GGCCATCGCCACGGT TGGCGCGGTGATCGGTGGCGGCG ACACGC CGCCGCCGGCGCGCATCGTGCTG TTCTCCGACGGCAAG TERM 908 1671948 - 1671995 + G 76 -14.7 -3.21276 | overlap 1671946 CCATCGCCACGGTTG GCGCGGTGATCGGTGGCGGCG ACACGC CGCCGCCGGCGCGCATCGTGC TGTTCTCCGACGGCA Rv1481 1671377 - 1672384 + | hypothetical protein TERM 909 1672488 - 1672470 - T 81 -13.8 -3.54424 | GGTTACGCTCGGAAA GCGCGGGC CTC GCCCACGC GGCGGATGATGTCAG Rv1482c 1673299 - 1672457 - | hypothetical protein fabG1 1673440 - 1674183 + | 3-oxoacyl-[acyl-carrier protein] reductase FabG1 inhA 1674202 - 1675011 + | enoyl-(acyl carrier protein) reductase hemH 1675017 - 1676051 + | ferrochelatase Rv1486c 1676883 - 1676017 - | hypothetical protein Rv1487 1676941 - 1677375 + | hypothetical protein Rv1488 1677397 - 1678542 + | hypothetical protein Rv1489 1678552 - 1678908 + | hypothetical protein Rv1489A 1678942 - 1679172 + | hypothetical protein Rv1490 1679322 - 1680629 + | hypothetical protein Rv1491c 1681966 - 1681208 - | hypothetical protein TERM 910 1682369 - 1682381 + G 74 -10.5 -3.85698 | GGAGCCGCCGTTGCC GGGCC AGT GGCCC TTTGTGCGCGGCGGA mutA 1682157 - 1684004 + | methylmalonyl-CoA mutase small subunit mutB 1684005 - 1686257 + | methylmalonyl-CoA mutase Rv1494 1686271 - 1686573 + | hypothetical protein TERM 911 1686741 - 1686700 - g 71 -9.3 -3.78934 | TGCGCCTGACAACAA CGCGGAGAACCATACCGAC CTGG GTCGCCATGGGCCCCAGCG ATCCATTGACCGGAT TERM 912 1686870 - 1686844 - g 75 -2.9 -4.73613 | gap 1, overlap 1686845 1686848 CGACGATGAACAAAA TCAACACGG-CG CTCG CGACCGCGCTGG GGCTACCGTGGCCAT Rv1495 1686570 - 1686887 + | hypothetical protein Rv1496 1686884 - 1687888 + | arginine/ornithine transport system ATPase lipL 1687941 - 1689230 + | esterase LipL Rv1498c 1689920 - 1689303 - | methyltransferase Rv1498A 1690346 - 1690134 - | hypothetical protein Rv1499 1690407 - 1690805 + | hypothetical protein TERM 913 1691145 - 1691161 + G 73 -12.3 -3.48593 | opp_overlap 1691143 1691140 ACTTGGAAGAGGACC CGGCTCT CCT AGAGCCG TTCTATGAAAAGCTG TERM 914 1691539 - 1691549 + G 89 -3.2 -5.38549 | CTTCATTTTCTATCT TGGT GCG GCCA TTTTTATTATTTCAA Rv1500 1690850 - 1691878 + | glycosyltransferase Rv1501 1691890 - 1692711 + | hypothetical protein TERM 915 1693278 - 1693268 - g 72 -4.6 -4.56597 | CGTGCCCTGGAAAAA CACC ATA GGCG TGGCGATTAGCGAAG Rv1502 1692924 - 1693823 + | hypothetical protein Rv1503c 1694544 - 1693996 - | hypothetical protein Rv1504c 1695144 - 1694545 - | hypothetical protein Rv1505c 1695946 - 1695281 - | hypothetical protein Rv1506c 1696443 - 1695943 - | hypothetical protein TERM 916 1696702 - 1696677 - RH 73 -3.2 -4.7078 | gap 1, overlap 1696678 GCAATGACCCAAAAA CCCGC-CGGCA CGGTT CGCCGAGCAAG GAAGCGTGGAGACGA Rv1507c 1697422 - 1696727 - | hypothetical protein Rv1507A 1697356 - 1697859 + | hypothetical protein Rv1508c 1699894 - 1698095 - | hypothetical protein TERM 917 1699529 - 1699484 - GfH 85 -10.4 -4.23434 | gap 1 CAAAAGAGTGGAAAA GACGTCGACCGCGTAC-CACT GACTG AGGGCGTACGCCGTCGCCGCC GAAATCACCGACGCC Rv1508A 1699866 - 1700228 + | hypothetical protein Rv1509 1700212 - 1701093 + | hypothetical protein TERM 918 1702458 - 1702482 + G 71 -12.2 -3.23216 | gap 1 TTTGCTGGGCTGGGT CAGCG-CGACG GTGG CGTCGACGCTG TTGCTGCTGCTGCCG Rv1510 1701295 - 1702593 + | hypothetical protein TERM 919 1703642 - 1703626 - g 71 -12.3 -3.27298 | opp_overlap 1703622 TTGTTCAATCACGAA TCACCGC GGC GCGGTGA GACGTTCGTGACCCG gmdA 1703074 - 1704096 + | GDP-D-mannose dehydratase gmdA (GDP-mannose 4,6 dehydratase) (GMD) epiA 1704093 - 1705061 + | nucleotide-sugar epimerase epiA Rv1513 1705058 - 1705789 + | hypothetical protein TERM 920 1705784 - 1705807 + T 84 -15.4 -3.38314 | overlap 1705782 TTCTTCCGGGGCAGC GATTGACGCG CCGG CGCGTCAATC TATTTCGACATTCGC Rv1514c 1706595 - 1705807 - | hypothetical protein Rv1515c 1707526 - 1706630 - | hypothetical protein Rv1516c 1708539 - 1707529 - | sugar transferase TERM 921 1709507 - 1709536 + G 77 -13 -3.61268 | gap 1, opp_overlap 1709517 1709518 GCCTACCTGGCGATA CCGCAGCA-AACC CAGCA GGTTATGCTGCGG TTTCAGGATTGGGTA Rv1517 1708871 - 1709635 + | hypothetical protein Rv1518 1709644 - 1710603 + | hypothetical protein Rv1519 1710733 - 1711002 + | hypothetical protein Rv1520 1711028 - 1712068 + | sugar transferase fadD25 1712302 - 1714053 + | acyl-CoA synthetase mmpL12 1717612 - 1714172 - | transmembrane transport protein MmpL12 TERM 922 1715893 - 1715915 + g 70 -6.3 -4.21936 | gap 1, overlap 1715895 1715897 CCCCCAGAGCCCGCA TGCG-CCCGA CATA TTGGGACGCA TTTTCCAGTTGTCGG TERM 923 1717270 - 1717289 + g 80 -9.2 -4.22948 | GAACCGATATTTTGT CCTGCGTG TCCG CCCGCAGG TTTTCGATCAGTTTT Rv1523 1717653 - 1718696 + | methyltransferase Rv1524 1718726 - 1719970 + | glycosyltransferase wbbL2 1720017 - 1720802 + | rhamnosyl transferase WbbL2 Rv1526c 1722060 - 1720780 - | glycosyltransferase pks5 1728409 - 1722083 - | polyketide synthase pks5 TERM 924 1722332 - 1722367 + g 73 -9.6 -4.00868 | CAGCCGGTCTGGCCA TTCCTCGCGGGGCAGG TCCA CCAGCTCGGCAAGGAA TTTGCTTGTGCCTGA TERM 925 1723147 - 1723132 - G 70 -6.1 -4.27316 | CGTCTGAACGGAAAA CCCGA GCCTGT TCGGG GGGAAGCACCACGCT TERM 926 1724744 - 1724771 + g 72 -8.5 -4.08216 | gap 2, overlap 1724764 ACACGTGCTGATCAG CAGCCAGGCGCCG GGTT CGGCG--TGGCTG TTTTCGGGCAGCTCA TERM 927 1727153 - 1727169 + g 80 -9.3 -4.24342 | opp_overlap 1727147 1727152 GCCATACGACGACAC CGCCGCG CGC CGGGGCG TTTCTTGATCGGCGC papA4 1729450 - 1728953 - | polyketide synthase associated protein fadD24 1729502 - 1731256 + | acyl-CoA synthetase adh 1731373 - 1732476 + | alcohol dehydrogenase adh Rv1531 1732473 - 1733039 + | hypothetical protein Rv1532c 1733550 - 1733116 - | hypothetical protein TERM 928 1733492 - 1733454 - G 79 -16.7 -3.02511 | CGTAGCGTTCGAACA CGATGCCGAGCCCGCCG ATGAA CGGCGTCCTCGGCATCA GCTCACGCACCGCCT Rv1533 1733610 - 1734737 + | hypothetical protein Rv1534 1734734 - 1735411 + | transcriptional regulator Rv1535 1735976 - 1736212 + | hypothetical protein ileS 1736519 - 1739644 + | isoleucyl-tRNA synthetase dinX 1739841 - 1741247 + | DNA polymerase IV ansA 1742192 - 1741212 - | L-aparaginase ansA TERM 929 1742337 - 1742295 - g 76 -14.7 -3.18383 | opp_overlap 1742321 1742333, overlap 1742318 ACCTCGACCGAGGAA GCCGGGGGGGCGGGGGAAC CTAAC GCTCCCGCGCCGCCGCGAC GGCTGCGCATGCTGC lspA 1742244 - 1742852 + | lipoprotein signal peptidase Rv1540 1742845 - 1743771 + | hypothetical protein lprI 1744371 - 1743778 - | lipoprotein LprI glbN 1744836 - 1744426 - | hemoglobin glbN Rv1543 1745064 - 1746089 + | fatty acyl-CoA reductase Rv1544 1746094 - 1746897 + | ketoacyl reductase Rv1545 1746919 - 1747146 + | hypothetical protein Rv1546 1747195 - 1747626 + | hypothetical protein TERM 930 1750645 - 1750628 - g 75 -6.9 -4.41609 | GAGGACAAACACAAA CTCGCCC TAGA GCGCGAG ATGCTGGGACTGTAC TERM 931 1750832 - 1750813 - g 79 -2.8 -5.07486 | gap 1, overlap 1750815 GAGGGTCAACAAAAA CGGAATGCC ATG GGC-TTCAG CGCAATTGGAGGATC dnaE 1747694 - 1751248 + | DNA polymerase III subunit alpha PPE21 1753333 - 1751297 - | PPE family protein fadD11.1 1753510 - 1754037 + | fatty-acid-CoA ligase fadD11 1753716 - 1755431 + | fatty-acid-CoA ligase plsB1 1755445 - 1757310 + | glycerol-3-phosphate acyltransferase TERM 932 1757488 - 1757474 - f 100 -9.2 -4.8622 | opp_overlap 1757473 TTCCCGAAGCAAAAA GCGCCC TGC GGGCAC ATGGTTGACGGCGAT frdA 1757681 - 1759432 + | fumarate reductase flavoprotein subunit frdB 1759435 - 1760178 + | fumarate reductase iron-sulfur subunit FrdB TERM 933 1760314 - 1760339 + G 70 -2.3 -4.66833 | overlap 1760315 TATTGCGCGCCGTTG GCGCGGGCGGG AATT CCTACCAGCGG TTTTTGGACTTCAGC frdC 1760175 - 1760555 + | fumarate reductase subunit C frdD 1760552 - 1760929 + | fumarate reductase subunit D Rv1556 1760997 - 1761605 + | regulatory protein mmpL6 1761744 - 1762937 + | transmembrane transport protein MmpL6 Rv1558 1762947 - 1763393 + | hypothetical protein TERM 934 1764494 - 1764510 + G 79 -11.5 -3.86015 | ACTTCCCGCAGGAGC CCGGTGC GCT GCGCCGG TTTCTCGACGACGTG ilvA 1763428 - 1764717 + | threonine dehydratase Rv1560 1764755 - 1764973 + | hypothetical protein Rv1561 1764979 - 1765383 + | hypothetical protein treZ 1767142 - 1765400 - | maltooligosyltrehalose trehalohydrolase TreZ treY 1769432 - 1767135 - | maltooligosyltrehalose synthase TreY TERM 935 1768848 - 1768837 - G 75 -7.2 -4.33417 | overlap 1768838 1768839 GTGATCGAGAAGAAA CGGC GGTA GCCG CACAGCCCGTGCCGC TERM 936 1769076 - 1769061 - G 70 -10.4 -3.63515 | GTCGATGTCGAAGAA CTCGGC ATAC GCCGAG GACCGGCCGAACTTC treX 1771601 - 1769436 - | maltooligosyltrehalose synthase TreX Rv1565c 1773829 - 1771640 - | hypothetical protein TERM 937 1773904 - 1773847 - R 100 -33.7 -2.56095 | gap 1, opp_overlap 1773853, overlap 1773853 TTGACAGTTAATTTA CCCAAACCAGCCTCCTGCTTCGCGC-GC TGA GCAGCGGGAAGCAGGAGGCGGGTTTGGG AGGCGAGAAAGCAAG TERM 938 1773853 - 1773898 + r 100 -24.1 -3.53012 | gap 1, opp_overlap 1773853 1773847 GTTAATTTACCCAAA CCAGCCTCCTGCTTCGCGC-GC TGA GCAGCGGGAAGCAGGAGGCGGG TTTGGGAGGCGAGAA TERM 939 1773898 - 1773853 - R 100 -24.1 -3.68619 | gap 1, opp_overlap 1773853, overlap 1773847 GTTAATTTACCCAAA CCAGCCTCCTGCTTCGCGC-GC TGA GCAGCGGGAAGCAGGAGGCGGG TTTGGGAGGCGAGAA Rv1566c 1774620 - 1773928 - | inv protein TERM 940 1773999 - 1774047 + g 100 -21.7 -3.14132 | overlap 1773983 1773998 1774014 GCGCTTGCTGGACCG GCGCCTGTTGGACCGGCGCCTGT TGG ACGGGCGCCTGTTGGACGGGCGC TTGCTGGACGGGCGC TERM 941 1774014 - 1774062 + g 78 -15.9 -3.14132 | overlap 1773998 1773999 GCGCCTGTTGGACCG GCGCCTGTTGGACGGGCGCCTGT TGG ACGGGCGCTTGCTGGACGGGCGC TTGCTGGACCGGCGC Rv1567c 1775144 - 1774860 - | hypothetical protein bioA 1775392 - 1776705 + | adenosylmethionine--8-amino-7-oxononanoate transaminase bioF1 1776702 - 1777862 + | 8-amino-7-oxononanoate synthase bioD 1777859 - 1778539 + | dithiobiotin synthetase Rv1571 1778539 - 1779048 + | hypothetical protein Rv1572c 1779298 - 1779194 - | hypothetical protein TERM 942 1779543 - 1779498 - g 79 -16.1 -2.82635 | gap 1 ATCGGCACGAGCACA CCGGCGAGCTCGAAGC-GTTCC TGC GGATCAGCGTCGAGCACGCCGA CGCCGCCGGCGGCGA Rv1573 1779314 - 1779724 + | phiRV1 phage protein TERM 943 1779780 - 1779803 + F 90 -18.2 -2.87132 | GGCGGGGCATGGATA GCTTCCGGCC CATG GGCCGGAAGC TATCTCGGAGAAACA TERM 944 1780081 - 1780066 - gf 78 -6.1 -4.59342 | GCGACGACAAAGAAA TCCGC CGGTTC GCGGA GAAACAAATGGCGCC TERM 945 1780216 - 1780183 - gf 70 -11.7 -3.22298 | overlap 1780184 1780210 1780211 TGCATCGATCACCAA TGCCGGCTTTGGTCC CATG GAACCAAAGCCGTCT CAGCGCCACACTGAC TERM 946 1780215 - 1780184 - gf 76 -15.2 -2.53164 | overlap 1780183 1780210 1780211 GCATCGATCACCAAT GCCGGCTTTGGTCC CATG GAACCAAAGCCGTC TCAGCGCCACACTGA Rv1574 1779930 - 1780241 + | phiRV1 phage related protein TERM 947 1780338 - 1780323 - gT 78 -6.1 -4.59342 | GCGACGACAAAGAAA TCCGC CTGTTC GCGGA GAAACAAATGGCGCC TERM 948 1780431 - 1780481 + GT 86 -17.7 -2.70932 | gap 1, overlap 1780416 CGACCATGGCCGCCA GGCTCGATATTCTGGCTTGGGGCC CATG GGCCCCAAGCCAGAATCG-GAGCG TCGTTCGACGAAAAC Rv1576c 1782064 - 1780643 - | phiRV1 phage protein Rv1575 1780199 - 1780699 + | phiRV1 phage protein TERM 949 1781865 - 1781923 + gT 86 -16.5 -3.15544 | gap 1 CTCAGCTCACCGGCC CGGT-AGCGGCGCAGCGCCTCCTCGGCT TCGC GGCCGCGGCGGCGCTGCTCCGCCCGCAG TTCCTCGGCGTGGCG Rv1577c 1782584 - 1782072 - | phiRv1 phage protein Rv1578c 1783228 - 1782758 - | phiRv1 phage protein TERM 950 1782907 - 1782925 + g 70 -10.3 -3.6608 | CCGTCACCGCCGGGT TCCGGTG CACGA CACCGGA TTTCGGTGAGGTAAT Rv1579c 1783623 - 1783309 - | phiRv1 phage protein Rv1580c 1783892 - 1783620 - | phiRv1 phage protein Rv1581c 1784301 - 1783906 - | phiRv1 phage protein TERM 951 1784267 - 1784314 + g 70 -11.3 -3.52909 | gap 2, overlap 1784265 1784291 1784292 1784302 CGGACGCTGTGCCGA CCGCCGGATGCCGGGGTGATCGC GACA GCGGTCA-TGCGGCA-CCGCCGG TGTTTGCTGGTTTGG Rv1582c 1785912 - 1784497 - | phiRv1 phage protein Rv1583c 1786310 - 1785912 - | phiRv1 phage protein Rv1584c 1786528 - 1786307 - | phiRv1 phage protein Rv1585c 1787099 - 1786584 - | phiRv1 phage protein Rv1586c 1788505 - 1787096 - | phiRv1 integrase TERM 952 1788068 - 1788086 + gr 76 -10.2 -3.85522 | AGCTTTCTGGCGGGC GGCGCGGC GCT GTCGTGCC TTCTTGTGCTCGGTT Rv1587c 1789163 - 1788162 - | REP13E12 repeat-containing protein TERM 953 1788575 - 1788587 + gr 71 -3.3 -4.57569 | CGTGGGTGTTGTTGT GGGTG GTC CAGCC TTTTTCGGCGAGTCG TERM 954 1788901 - 1788931 + gr 77 -12.5 -3.57792 | ATGGGTAGCAGGGTG CCGCCGCCGGTGA AGCCC TTGCCGGCGCCGG TTTGCAGGTCGGTCA Rv1588c 1789836 - 1789168 - | REP13E12 repeat-containing protein bioB 1790284 - 1791333 + | biotin synthase Rv1590 1791334 - 1791573 + | hypothetical protein TERM 955 1792033 - 1792049 + G 70 -3.5 -4.56597 | overlap 1792035 CCCTGACGTACGTCA CCCAGGC CCC GCCGGTG TTTTTCGCCCGCCGG Rv1591 1791570 - 1792235 + | hypothetical protein Rv1592c 1793740 - 1792400 - | hypothetical protein Rv1593c 1794707 - 1793997 - | hypothetical protein TERM 956 1794698 - 1794708 + g 72 -5.4 -4.32482 | overlap 1794707 CGTGGGCGGTGCTAC CATG GGC CATG TTTTCGATTATAAGT TERM 957 1795089 - 1795066 - g 73 -6 -4.37886 | gap 1, opp_overlap 1795076 1795083, overlap 1795067 TCAGCCCGCACAAAA CCGTGCTGATC CCG GATCAGCG-GG CCGGCTGTTCGCTGG nadA 1794756 - 1795805 + | quinolinate synthetase TERM 958 1797010 - 1796983 - g 100 -19.8 -3.53012 | CGGCCGCGCCGGAAA GGCCGCCGCCGC CCAC GCCGCGGCGGCC GGGCGTTCGCGTGCG nadB 1795805 - 1797388 + | L-aspartate oxidase TERM 959 1797850 - 1797838 - g 79 -7.7 -4.56597 | overlap 1797840 1797841 CGCGCGCTGCAAAAA TACGC GGT GCGTA CCGGTGGCGGCGTCA nadC 1797388 - 1798245 + | nicotinate-nucleotide pyrophosphorylase Rv1597 1798294 - 1799052 + | hypothetical protein Rv1598c 1799483 - 1799073 - | hypothetical protein TERM 960 1799226 - 1799189 - G 85 -15.6 -3.66018 | overlap 1799166 1799190 TGATGACGTGAACAA CGCCGCGGGCGAAG TGCACGTCGG CTTCGCCCGCGGCC AACACGTTCTTGACC TERM 961 1799225 - 1799190 - G 87 -19.1 -2.79289 | overlap 1799166 1799189 GATGACGTGAACAAC GCCGCGGGCGAAG TGCACGTCGG CTTCGCCCGCGGC CAACACGTTCTTGAC hisD 1799583 - 1800899 + | histidinol dehydrogenase hisC1 1800896 - 1802038 + | histidinol-phosphate aminotransferase hisB 1802035 - 1802667 + | imidazoleglycerol-phosphate dehydratase hisH 1802664 - 1803284 + | imidazole glycerol phosphate synthase subunit HisH hisA 1803294 - 1804031 + | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase TERM 962 1804599 - 1804572 - g 72 -8.3 -4.07568 | GGCGGTGCTGGAAAA GCTCAGCCGAG TGTCAT CGCGGCTGCGC ATGCACGGATCCACC impA 1804039 - 1804851 + | inositol-monophosphatase hisF 1804853 - 1805656 + | imidazole glycerol phosphate synthase subunit HisF hisI 1805653 - 1806000 + | phosphoribosyl-AMP cyclohydrolase chaA 1806181 - 1807263 + | ionic transporter integral membrane protein chaA bcpB 1807762 - 1807298 - | peroxidoxin BcpB trpE 1807903 - 1809453 + | anthranilate synthase component I Rv1610 1809443 - 1810150 + | hypothetical protein trpC 1810240 - 1811058 + | indole-3-glycerol-phosphate synthase TERM 963 1811876 - 1811886 + G 75 -3.2 -4.78764 | overlap 1811872 TGGTGGCGGGTCCAA TGCC ATT GGTA TTTTTCATGCGTTTC trpB 1811127 - 1812359 + | tryptophan synthase subunit beta trpA 1812359 - 1813171 + | tryptophan synthase subunit alpha lgt 1813171 - 1814577 + | prolipoprotein diacylglyceryl transferase TERM 964 1815015 - 1815001 - f 74 -4.9 -4.64334 | AACTCGGGAACAAAA CCGCC GGTCA GGCAG CTGTCGCTGAGAGCC Rv1615 1815253 - 1815693 + | hypothetical protein Rv1616 1815683 - 1816081 + | hypothetical protein pykA 1816189 - 1817607 + | pyruvate kinase TERM 965 1817729 - 1817719 - g 79 -4.6 -4.7373 | CCACCCCAGCAAAAA CCCG CTC CGGA CATTTGGTGGCCAGC tesB1 1817615 - 1818517 + | acyl-CoA thioesterase II TesB1 TERM 966 1818870 - 1818913 + GT 88 -8.9 -4.72272 | gap 3, overlap 1818872 CTCGCGGCATCTTCC TGGGCC-GCC-CGGTCACG-GC CAT GCATGCGACCGCGGCCGGCCTA TTTTTGCTCGCCGGA TERM 967 1818872 - 1818911 + GT 76 -9.3 -3.98256 | gap 3, overlap 1818870 CGCGGCATCTTCCTG GGCC-GCC-CGGTCACG-GC CAT GCATGCGACCGCGGCCGGCC TATTTTTGCTCGCCG cydC 1821693 - 1819963 - | cytochrome' transport transmembrane ATP-binding protein ABC transporter CydC Rv1619 1818575 - 1820029 + | hypothetical protein TERM 968 1821196 - 1821168 - GT 74 -6 -4.4078 | gap 2, overlap 1821170 CGCCGGCAACCAAAA GGCAGACCGCCAGT ACC AC-GGCGG-CTGGC ACCGAAACGGCCGCG TERM 969 1821224 - 1821204 - GT 70 -10.3 -3.64703 | overlap 1821205 CGGCTGGCACCGAAA CGGCCGCGA CGA CCGCGGTCG CGGCTACTGCCAGCA cydD 1823273 - 1821690 - | vytochrome' transport transmembrane ATP-binding protein ABC transporter CydD TERM 970 1822329 - 1822366 + g 78 -15.5 -3.15663 | gap 1, opp_overlap 1822331, overlap 1822324 TCTCTCCAGGCGAAT CACCCCGCCG-CGCGCGG TGA CCGTTCGTCGGCCGGGTG TTGGTGAGGGTGACT TERM 971 1823303 - 1823289 - R 70 -12.8 -2.94099 | CGTGCTGAGTAGATA GCGGCG CAG CGCCGC CGATGCCTGCCACAG TERM 972 1823334 - 1823352 + r 70 -11.6 -3.21099 | overlap 1823335 CCGCGGATCCAGGGG CGCCCGGG TTC CCCGGGCC TTGGTGCTCAGGGCG TERM 973 1823335 - 1823351 + r 76 -15.1 -2.52516 | overlap 1823334 CGCGGATCCAGGGGC GCCCGGG TTC CCCGGGC CTTGGTGCTCAGGGC cydB 1824400 - 1823360 - | integral membrane cytochrome D ubiquinol oxidase (subunit II) cydB (cytochrome bd-I oxidase subunit II) cydA 1825887 - 1824430 - | integral membrane cytochrome D ubiquinol oxidase (subunit I) cydA (cytochrome bd-I oxidase subunit I) TERM 974 1825486 - 1825468 - G 70 -10.2 -3.75024 | CGCGATGATGAAGAA CGCGGACA CGT TGACCGCG ATTGCGACGATCCAG Rv1624c 1826585 - 1825998 - | hypothetical protein cya 1827945 - 1826614 - | membrane-anchored adenylyl cyclase Cya (ATP pyrophosphate-lyase) (adenylate cyclase) TERM 975 1828671 - 1828657 - g 77 -7.8 -4.3534 | GTGGAACGAGCAAAA GGCCTG CTG CAGACC AAACATGGGATGACC Rv1626 1828180 - 1828797 + | two-component system transcriptional regulator TERM 976 1828809 - 1828850 + T 100 -29.1 -2.78384 | opp_overlap 1828809 1828816, overlap 1828798 1828816 CTGAGGGCGAGCAGA CGCAAAATCGCCCATTTCG TACC CGAAATGGGCGATTTTGCG TCTGCTCGCGGAACC TERM 977 1828850 - 1828809 - T 100 -29.1 -2.79183 | opp_overlap 1828798 1828809 1828816, overlap 1828816 CTGAGGGCGAGCAGA CGCAAAATCGCCCATTTCG TACC CGAAATGGGCGATTTTGCG TCTGCTCGCGGAACC TERM 978 1828816 - 1828843 + T 100 -18.6 -4.24948 | opp_overlap 1828816 1828809, overlap 1828798 1828809 CGAGCAGACGCAAAA TCGCCCATTTCG TACC CGAAATGGGCGA TTTTGCGTCTGCTCG TERM 979 1828843 - 1828816 - T 100 -18.6 -4.24948 | opp_overlap 1828798 1828809 1828816, overlap 1828809 CGAGCAGACGCAAAA TCGCCCATTTCG TACC CGAAATGGGCGA TTTTGCGTCTGCTCG Rv1627c 1830073 - 1828865 - | lipid-transfer protein Rv1628c 1830561 - 1830070 - | hypothetical protein polA 1830665 - 1833379 + | DNA polymerase I TERM 980 1833671 - 1833627 - g 73 -3.6 -4.67943 | gap 1, overlap 1833634 1833637 1833646 CCGCAATAGACAAAA CGATCAAGTACTTCAACGATG GCGA CATCGTCGAAGG-CACCATCG TCAAAGTGGACCGGG rpsA 1833542 - 1834987 + | 30S ribosomal protein S1 TERM 981 1835763 - 1835776 + G 77 -8.1 -4.36914 | GGGTCAACCGCCGTG TCGGG CTTC CCCGA TTTTCTAGCCAAGGA TERM 982 1835931 - 1835906 - g 72 -6.8 -4.24948 | opp_overlap 1835917 CCAGGACACCGAAAA GACCGACGCT CGCAGC ACCGTCGGCC GCTACGACCACACCG TERM 983 1836027 - 1836008 - g 72 -13.6 -3.14132 | opp_overlap 1836017 1836019 1836026 CGGTCGGCCGACCAA CGTGCACC TGCG GGTGCACG GCTGGCCCAACCAAC coaE 1835013 - 1836236 + | fused dephospho-CoA kinase/unknown domain-containing protein Rv1632c 1836830 - 1836387 - | hypothetical protein TERM 984 1837896 - 1837876 - g 73 -11.1 -3.73647 | GCCATCGAGGAAGAA CTCGCCGAG CGA CTCGCCGAG CTTGAGAGCCAGGGC TERM 985 1838761 - 1838747 - g 73 -6.4 -4.38712 | TGTACGCCGACAAAA TCACCG ACT CGATGA GGGAAGCCATCGACG TERM 986 1838895 - 1838853 - g 70 -3.5 -4.56597 | gap 2, overlap 1838855 GCCGCTGCGCAAAAA GATCGCCGACATCCTCGAT CAGGTCT ATCG-GGAGGCCGACGA-C ACCGCCGTCGTCGAG uvrB 1837075 - 1839171 + | excinuclease ABC subunit B Rv1634 1839168 - 1840583 + | drug efflux membrane protein Rv1635c 1842242 - 1840572 - | transmembrane protein TERM 987 1841812 - 1841795 - G 77 -6.9 -4.56775 | ACTGTTTGGCAAAAA CCACCAC GCCG GCGGCGG CCGCTCCAATGGCCA TERM 988 1842739 - 1842702 - g 76 -6.4 -4.56597 | gap 3, opp_overlap 1842720 CGCCGGTGCGAAAAA CGTCGA--GGAACGGCCGA TCG TCGGC-GCCCCGGTCGACG CGTTGGTGAACCTGG TB15.3 1842451 - 1842891 + | hypothetical protein Rv1637c 1843692 - 1842898 - | hypothetical protein uvrA 1843741 - 1846659 + | excinuclease ABC subunit A Rv1638A 1846973 - 1846716 - | hypothetical protein Rv1639c 1848458 - 1846989 - | hypothetical protein lysS 1852035 - 1848517 - | lysyl-tRNA synthetase TERM 989 1851892 - 1851876 - G 81 -10.8 -4.13282 | overlap 1851867 AGGATATTCCCAAAA GCCGGG AAATG CCCGGC GTTGCAGCCCTTTGT TERM 990 1852093 - 1852111 + H 74 -13.2 -3.35798 | TCAGCGGTCCGGTCA CAGGCATC TCG GATGCCTG TTCTGCGTGCAGCGT TERM 991 1852159 - 1852176 + H 100 -12.7 -5.55664 | ATCGGTCGGCATTGG GCCCTGC TTGT GCAGGGC TTTTTTTGCTGATGG TERM 992 1852842 - 1852790 - g 74 -14.6 -3.01791 | overlap 1852757 1852754 ACCGCGGTGCGAAGA CCCGCGCTAGGGCCCGCCACCCGG GTGAA CCGGCCGGCGGGCCGCCGCCCAAG CCCACGGCCGGTGAC infC 1852273 - 1852878 + | translation initiation factor IF-3 rpmI 1852928 - 1853122 + | 50S ribosomal protein L35 rplT 1853184 - 1853573 + | 50S ribosomal protein L20 tsnR 1853606 - 1854388 + | 23S rRNA methyltransferase TsnR Rv1645c 1855454 - 1854399 - | hypothetical protein TERM 993 1855017 - 1855040 + g 70 -2.3 -4.60041 | overlap 1855022 CATCCGGTACCAGCG CACGTGCTC CTCGAA GAGCTGGTG TTTTTCGGCCTCGGT PE17 1855764 - 1856696 + | PE family protein Rv1647 1856774 - 1857724 + | hypothetical protein TERM 994 1857915 - 1857941 + G 78 -5.9 -4.62622 | gap 2, opp_overlap 1857915, overlap 1857902 1857901 1857915 1857914 GAACGCTGTGGAACA GC--GCCTTCGTC ATC GACGAGGGCCCGC TTTATTTCTGGTTAC Rv1648 1857731 - 1858537 + | transmembrane protein pheS 1858733 - 1859758 + | phenylalanyl-tRNA synthetase subunit alpha TERM 995 1860656 - 1860689 + G 95 -19.7 -2.83715 | AGACCGCCGTGACCC TCGACGGTATCGAGC GCAA GCTCGATACCGCCGA TGTCCTGATCGTCGA pheT 1859758 - 1862253 + | phenylalanyl-tRNA synthetase subunit beta PE_PGRS30 1865382 - 1862347 - | PE-PGRS family protein TERM 996 1862818 - 1862836 + g 77 -7.4 -4.4009 | overlap 1862820 TGTGTCCGTGACCGT CATCACCA CAT TGGTGAAG TTTTGTGACATGGCG TERM 997 1863349 - 1863298 - G 78 -13.7 -3.61517 | gap 1, overlap 1863300 ACTTTGGCCGAACAA CACCCC-GCCGGTGCCACCGGT GCCGCCATT ACCCGGGGCACCGGCCGGGCTG CCGGCGCCGCCGGCG TERM 998 1863346 - 1863300 - G 85 -16.5 -3.38812 | overlap 1863298 TTTGGCCGAACAACA CCCCGCCGGTGCCACCGGT GCCGCCATT ACCCGGGGCACCGGCCGGG CTGCCGGCGCCGCCG TERM 999 1863885 - 1863856 - G 80 -14.9 -3.44146 | overlap 1863857 GCTGCCGAGAAGCAA CGCGGTGCCGCCG CTGC CGCCGGCACCGCC GACACCGGAGCTAAA TERM 1000 1863884 - 1863857 - G 87 -18.4 -2.66274 | overlap 1863856 CTGCCGAGAAGCAAC GCGGTGCCGCCG CTGC CGCCGGCACCGC CGACACCGGAGCTAA TERM 1001 1863996 - 1863958 - G 73 -14.4 -3.14931 | opp_overlap 1863963 1863967, overlap 1863962 GCCATTGCCGATGAA GCTACTGCCCGCGGCACC ACC GGCGCCGCCGGCACCGGC GTTGGCGAGTATGTT TERM 1002 1863992 - 1863962 - G 71 -14.6 -2.56596 | opp_overlap 1863963 1863967, overlap 1863958 TTGCCGATGAAGCTA CTGCCCGCGGCACC ACC GGCGCCGCCGGCAC CGGCGTTGGCGAGTA TERM 1003 1864200 - 1864183 - G 77 -12.7 -3.67775 | ACCGTTACCGAACAA GCTGGCG TTGC CGCCAGC ACCCCCGGCACCGCC TERM 1004 1864315 - 1864296 - G 77 -16.4 -2.62184 | opp_overlap 1864308 CGTTGCCGTACAGCA GGCCGGCG TTGC CGCCGGCC CCGCCAGCGCCGGCG TERM 1005 1864787 - 1864746 - G 70 -12.9 -3.01712 | gap 1, overlap 1864749 CGCCGTTGCCGAACA GCAG-GGCGTTGCCGCCGGC CCC ACCGGCCGCAGCGGCACTGC CCCCGTTGCCGCCGG TERM 1006 1866030 - 1866074 + G 75 -4.9 -4.57569 | gap 2, opp_overlap 1866014, overlap 1866016 1866029 TGCGCGGCACCCGCC GCATC-GCGGTGCC-CGGCTG CTATC CGACCGCGGCACTGCTGGCGC TTTTTCCCGCGCTGG argC 1865576 - 1866634 + | N-acetyl-gamma-glutamyl-phosphate reductase argJ 1866631 - 1867845 + | bifunctional ornithine acetyltransferase/N-acetylglutamate synthase protein argB 1867842 - 1868726 + | acetylglutamate kinase TERM 1007 1869230 - 1869192 - g 70 -8.6 -3.90856 | overlap 1869179 1869180 AACCGGCCAAGCAAA CGCCGTTCGCGCCGCTGC CCG GCGACGTCACGCACGTCG GCTACGGCGACGTCG argD 1868723 - 1869925 + | acetylornithine aminotransferase argF 1869922 - 1870845 + | ornithine carbamoyltransferase argR 1870842 - 1871354 + | arginine repressor TERM 1008 1871856 - 1871824 - g 71 -12.8 -3.30124 | gap 1, overlap 1871825 GTGGACGCGGGAGAA GGCGATCGCGTTCGC CGAG GAGAACGCGATC-CC GATCAACGTCACCAA argG 1871363 - 1872559 + | argininosuccinate synthase TERM 1009 1872620 - 1872579 - f 87 -19 -2.78384 | opp_overlap 1872579 1872586, overlap 1872586 TCTCCCGCGAGCAGA CGCAGAATCGCACCGCC-AC GCCC GTCGGCG-TGCGATTCTGCG TCTGCTCGCCACAGA TERM 1010 1872579 - 1872620 + F 87 -19 -2.78384 | opp_overlap 1872579 1872586, overlap 1872586 TCTCCCGCGAGCAGA CGCAGAATCGCACCGCC-AC GCCC GTCGGCG-TGCGATTCTGCG TCTGCTCGCCACAGA TERM 1011 1873336 - 1873374 + G 70 -13.1 -3.04792 | gap 2, opp_overlap 1873325, overlap 1873355 ACAACTCCGTCGACG CGACCGCCGCC-C-GCGAC TTC GCCGCCGAGGCGGCGTTCG TGTTCGCCATGATCG TERM 1012 1873355 - 1873370 + G 70 -11.8 -3.36749 | overlap 1873336 CGCCGCCCGCGACTT CGCCGC CGAG GCGGCG TTCGTGTTCGCCATG TERM 1013 1873679 - 1873703 + G 72 -13.5 -3.12351 | GCTGCTGCCGGCGAT GGCCGGGCTGG TGG CCAGCCTGACC TTCAATGTCCAGCGG argH 1872639 - 1874051 + | argininosuccinate lyase TERM 1014 1874413 - 1874385 - g 71 -3.1 -4.66163 | gap 1 ATTTTCATCGAAAAA GCCGTGGACTTG GGCGTG CAAGCCCT-GGC GGGGGCACTCGACGA pks10 1874160 - 1875221 + | chalcone synthase TERM 1015 1878224 - 1878237 + G 70 -5.9 -4.2528 | overlap 1878225 GCCCGGTGGTGCTGT TCCCG GGCA CGGGG TTTGTTGAGTTGGCC TERM 1016 1880064 - 1880088 + G 90 -15.7 -3.87994 | CACCGATGCCTCGCT GCGGCTACTGC CCA GCGGTGGCCGC TTTATCGAGCTGGGT pks7 1875304 - 1881684 + | polyketide synthase pks7 pks8 1881704 - 1886512 + | polyketide synthase pks8 pks17 1886512 - 1888020 + | polyketide synthase pks17 TERM 1017 1888146 - 1888166 + G 73 -3.9 -4.61231 | opp_overlap 1888145, overlap 1888145 GGATCCATTGACAAC GTCGCCG ATTTCGA CGCCGAC TTTTTCAACCTATCC TERM 1018 1889113 - 1889165 + G 72 -11.8 -3.61178 | TTCGGGTCGACACCG CGTTGACGCCGTGGCCGGTGGCGG ATGAG CCGCGACGGGCTGGGGTGTCGTCG TTTGGCATGGGTGGG pks9 1888026 - 1891079 + | polyketide synthase pks9 pks11 1891226 - 1892287 + | chalcone synthase cyp139 1893562 - 1892270 - | cytochrome P450 139 CYP139 TERM 1019 1892981 - 1893019 + g 74 -12.4 -3.55563 | TCTGGGTGCCGTGCG CGCGTCGGCGATCTGAGC GTC GATGAGGTCGTCGATGCG TTTGCGGGCTGCCAT Rv1667c 1894230 - 1893577 - | macrolide-transport ATP-binding protein ABC transporter TERM 1020 1893742 - 1893768 + g 71 -2.9 -4.65895 | GTCGGCCAGGCGGGC GAGTTGACGGT CGACT GCGGCCAACTC TTTTTCGGTGGCACG Rv1668c 1895342 - 1894224 - | macrolide-transport ATP-binding protein ABC transporter Rv1669 1895725 - 1896087 + | hypothetical protein Rv1670 1896120 - 1896467 + | hypothetical protein Rv1671 1896475 - 1896867 + | hypothetical protein Rv1672c 1898207 - 1896876 - | integral membrane transport protein TERM 1021 1897865 - 1897839 - G 83 -15.8 -3.61715 | overlap 1897818 1897840 GACGCCGGGGAAGAA GCCGCCCTCGGC GAC GCCGAGGGCGAA GCGCGCCAGATACAA TERM 1022 1897864 - 1897840 - G 93 -19.3 -2.76815 | overlap 1897818 1897839 ACGCCGGGGAAGAAG CCGCCCTCGGC GAC GCCGAGGGCGA AGCGCGCCAGATACA TERM 1023 1897925 - 1897881 - G 70 -10.7 -3.58726 | gap 1, overlap 1897922 1897924 GCGCGCCAGATACAA GGTGTGCGCGCTGGTGACCA AGGCCG TGGCCGCC-GAGCACACACC CCAAGCCAGGACGAC Rv1673c 1899232 - 1898300 - | hypothetical protein Rv1674c 1899916 - 1899260 - | transcriptional regulatory protein TERM 1024 1899324 - 1899305 - G 71 -12.1 -3.31461 | CAGCCATTCGGAGAA CCCGCCG TCGAGT CGGCGGG CAGAAAATCCGTTGG Rv1675c 1900975 - 1900241 - | transcriptional regulatory protein TERM 1025 1901370 - 1901382 + G 95 -5.5 -5.26875 | overlap 1901369 TGCGGACAGTGGAAT CACCG AGG TGGTG TTTTTTCATTCGGCG Rv1676 1901047 - 1901751 + | hypothetical protein dsbF 1901748 - 1902296 + | lipoprotein DsbF Rv1678 1902397 - 1903299 + | integral membrane protein fadE16 1903299 - 1904420 + | acyl-CoA dehydrogenase Rv1680 1904429 - 1905253 + | hypothetical protein moeX 1905250 - 1906242 + | molybdopterin biosynthesis protein MoeX Rv1682 1906403 - 1907320 + | coiled-coil structural protein TERM 1026 1909405 - 1909368 - g 83 -2.6 -5.1287 | gap 1, opp_overlap 1909378 1909403 TCGACATGGAAAAAA TCGACCCGGACGCCGTC GAGTT GCCGGCGTG-GTATCGA CCGAATCCCGGATTG Rv1683 1907594 - 1910593 + | acyl-CoA synthetase Rv1684 1910586 - 1910810 + | hypothetical protein Rv1685c 1911399 - 1910776 - | hypothetical protein Rv1686c 1912081 - 1911401 - | integral membrane protein ABC transporter TERM 1027 1911821 - 1911785 - G 77 -12.9 -3.56727 | overlap 1911794 GCCAAGGAACCAGAA CGCCACAATGCAGGCCA GCG TGGCCTGCGCCGCCGCG GCGATCGAGAACGCG TERM 1028 1911812 - 1911794 - G 71 -14.6 -2.62653 | overlap 1911785 CCAGAACGCCACAAT GCAGGCCA GCG TGGCCTGC GCCGCCGCGGCGATC Rv1687c 1912920 - 1912153 - | ABC transporter ATP-binding protein TERM 1029 1912928 - 1912897 - G 73 -13.2 -3.33815 | opp_overlap 1912906, overlap 1912914 ACCGTCGCGAAGTAA TTCATCACTTGATG AAAT CATCATGTGATGAA TATCCGCCAGTCGTG mpg 1912979 - 1913590 + | 3-methyladenine DNA glycosylase tyrS 1913602 - 1914876 + | tyrosyl-tRNA synthetase lprJ 1915527 - 1915910 + | lipoprotein LprJ TERM 1030 1916199 - 1916174 - g 73 -12.5 -3.38272 | gap 1 GACGACGACCCAGAA GCCGCTCTGCGC CAC GCGCGG-GCGGC GCGGGTTCGGGCCAG Rv1691 1915949 - 1916701 + | hypothetical protein Rv1692 1916698 - 1917759 + | phosphatase Rv1693 1917756 - 1917932 + | hypothetical protein tlyA 1917940 - 1918746 + | cytotoxin/hemolysin TlyA TERM 1031 1918946 - 1918986 + G 75 -9.5 -4.07885 | overlap 1918949 GATCGAGGTGGTTGA CGCGGACCAGCACGCAGCC GAC GGCTGCGAACTGGTGCTGG TTTTGGGCGGCGATG TERM 1032 1918949 - 1918983 + G 73 -14.2 -3.08032 | overlap 1918946 CGAGGTGGTTGACGC GGACCAGCACGCAGCC GAC GGCTGCGAACTGGTGC TGGTTTTGGGCGGCG TERM 1033 1919068 - 1919078 + G 81 -8.2 -4.56597 | TGGGCGTCAATCTGG GCCG CAT CGGC TTTTTGGCCGAGGCC ppnK 1918746 - 1919669 + | inorganic polyphosphate/ATP-NAD kinase recN 1919683 - 1921446 + | DNA repair protein recN (recombination protein N) Rv1697 1921542 - 1922723 + | hypothetical protein TERM 1034 1922813 - 1922825 + G 77 -3.3 -4.86001 | GGCCATGGGCGTAGT GTTGG GTT CCGGC TTTTTCTCCGATACT Rv1698 1922745 - 1923689 + | hypothetical protein TERM 1035 1924354 - 1924371 + G 83 -2.5 -5.252 | overlap 1924356 CAAGTCCGGCACTAT CTCGGCC GGGA GGACGTG TTTTTTCTGCACGTG pyrG 1923829 - 1925589 + | CTP synthetase Rv1700 1925582 - 1926205 + | hypothetical protein xerD 1926202 - 1927137 + | site-specific tyrosine recombinase XerD Rv1702c 1928575 - 1927211 - | hypothetical protein Rv1703c 1929721 - 1929131 - | catechol-o-methyltransferase cycA 1931456 - 1929786 - | D-serine/alanine/glycine transporter protein CycA TERM 1036 1930083 - 1930059 - G 72 -6.9 -4.21922 | overlap 1930055 1930060 GCAGTGAAAACCAAA GCTGCGGCGGC TCT GCCGGCGCTGG GTGACGAGCCAACCC TERM 1037 1931176 - 1931163 - G 91 -9.5 -4.7373 | overlap 1931164 1931165 CCACCCCACGAAAAA GCCCG CCGC CGGGC CCCGGAGGTCGGCGG PPE22 1932654 - 1931497 - | PPE family protein PPE23 1933878 - 1932694 - | PPE family protein TERM 1038 1933298 - 1933281 - G 76 -8.3 -4.21275 | opp_overlap 1933291 CGAACGGAGTCAAAA CCGTGGC GGGT GCCGCGG CGCTGGCATAGCCGT TERM 1039 1934524 - 1934500 - R 70 -9.9 -3.59979 | GGGCGTTACGTGAAA GGTTCGGCAGC GGT GCTGCCCAGCC TGGCCGGTGGCGAAC Rv1706A 1934649 - 1934482 - | hypothetical protein TERM 1040 1935762 - 1935779 + G 77 -2.7 -4.89562 | gap 1, overlap 1935764 1935766 AGACCGCCCTGTCGG CGGCCACT CAC AGT-GTCG TTTTGTTCGTTTTCG Rv1707 1934882 - 1936342 + | transmembrane protein Rv1708 1936360 - 1937316 + | putative initiation inhibitor protein Rv1709 1937313 - 1938149 + | hypothetical protein Rv1710 1938146 - 1938841 + | hypothetical protein Rv1711 1938838 - 1939602 + | hypothetical protein cmk 1939599 - 1940291 + | cytidylate kinase TERM 1041 1940424 - 1940454 + G 77 -15.4 -3.02511 | CCCTGGTCAACCGGA TCCTGGGCCGCCGC GAG GCGGTGGTGCAGGA TATTCCCGGCGTGAC TERM 1042 1940746 - 1940732 - g 73 -4.2 -4.70659 | opp_overlap 1940740 GTCGACAGCGAAAAA GGCG AATCCGA CGCC GCGGCGTTGTGGTCG engA 1940288 - 1941679 + | GTP-binding protein EngA TERM 1043 1941739 - 1941774 + F 81 -12.7 -3.76373 | opp_overlap 1941747 AGGCCGGTTCTGCTG TCCCATAATGCGGCT ATGTTC AGCTGCATTACGGGA TTTAGGTGTTGACAC Rv1714 1941853 - 1942665 + | oxidoreductase fadB3 1942659 - 1943573 + | 3-hydroxybutyryl-CoA dehydrogenase FADB3 TERM 1044 1944288 - 1944253 - g 78 -10.5 -4.08216 | gap 1 CTACGGCTTTGAAAA CG-TCGGCGGTGACCT GGACA AGGTCACCGGCAAGCG CGTCACTTTCGCGGC Rv1716 1943576 - 1944406 + | hypothetical protein Rv1717 1944406 - 1944756 + | hypothetical protein Rv1718 1944809 - 1945627 + | hypothetical protein Rv1719 1945641 - 1946420 + | transcriptional regulatory protein Rv1720c 1947419 - 1947030 - | hypothetical protein Rv1721c 1947643 - 1947416 - | hypothetical protein TERM 1045 1947680 - 1947656 - H 70 -12.9 -2.90392 | CATGTTGTAAGCATA TCGGACATGTG AAA CACATGTCCGG TTGCCGGTGTGACCG Rv1722 1947861 - 1949345 + | biotin carboxylase-like protein Rv1723 1949342 - 1950589 + | hydrolase Rv1724c 1951051 - 1950632 - | hypothetical protein TERM 1046 1950831 - 1950808 - G 72 -5.2 -4.34402 | overlap 1950809 CGGTCGATACGAAAA CCGAGAACCG AATA CGGTCGTCGA GCAGCGAAATGTCGA Rv1725c 1951751 - 1951041 - | hypothetical protein Rv1726 1951852 - 1953237 + | oxidoreductase Rv1727 1953270 - 1953839 + | hypothetical protein Rv1728c 1954634 - 1953864 - | hypothetical protein Rv1729c 1955569 - 1954631 - | hypothetical protein Rv1730c 1957245 - 1955692 - | penicillin-binding protein TERM 1047 1958724 - 1958689 - g 70 -6.1 -4.18058 | gap 1 AAGCACAGCTGAAAA CCGTGTCCGGTCACGT GGATG ACGCGAC-GGCCAAGG GCGCCAAGGTGATTG gabD2 1957677 - 1959233 + | succinic semialdehyde dehydrogenase Rv1732c 1959791 - 1959243 - | hypothetical protein Rv1733c 1960487 - 1959855 - | transmembrane protein Rv1734c 1961016 - 1960774 - | hypothetical protein Rv1735c 1961788 - 1961291 - | hypothetical protein narX 1964186 - 1962228 - | nitrate reductase NarX TERM 1048 1963072 - 1963047 - G 84 -16.9 -3.14564 | gap 1 GTACCCGCTCAGCAA CCGTCG-CCCCG CCT CGGGGTCGACGG TCGCGGCGAATTCGA TERM 1049 1963889 - 1963863 - G 77 -7.9 -4.30576 | gap 1, overlap 1963865 CGTGTACCAGGAAAA CGCCGC-GCCGC GCGG GCAGCCGCGGGG CTCATACTCGGGCCG narK2 1965370 - 1964183 - | nitrate/nitrite transporter NarK2 Rv1738 1965657 - 1965941 + | hypothetical protein Rv1739c 1967637 - 1965955 - | sulphate-transport transmembrane protein ABC transporter TERM 1050 1966991 - 1966971 - G 70 -11.1 -3.60661 | CATCCAAGGACATAA CGGCCACTA GCA TCGTGGCCG CAAGAACCGCGATGA Rv1740 1967705 - 1967917 + | hypothetical protein Rv1741 1967917 - 1968165 + | hypothetical protein TERM 1051 1968779 - 1968796 + G 72 -6.9 -4.19177 | CATTATTGCGCCGAC CCCGTGG ATGT CGACGGG TTTGTATTCCCGACT Rv1742 1968173 - 1968910 + | hypothetical protein TERM 1052 1969517 - 1969507 - g 72 -6.8 -4.28994 | CACCACCGACGAAAA GCTG ACC CAGC TCGGCAACACGGTGG TERM 1053 1970611 - 1970593 - g 77 -10.2 -3.93638 | opp_overlap 1970594, overlap 1970594 AACGAAGGCCACAAA CGCCAGCG AGA CGCTGGCC GGCTTCAATGCCAGC TERM 1054 1970610 - 1970594 - g 72 -13.7 -2.95459 | opp_overlap 1970594, overlap 1970593 ACGAAGGCCACAAAC GCCAGCG AGA CGCTGGC CGGCTTCAATGCCAG pknE 1969004 - 1970704 + | transmembrane serine/threonine-protein kinase E Rv1744c 1971390 - 1970989 - | hypothetical protein idi 1971991 - 1971380 - | isopentenyl-diphosphate delta-isomerase pknF 1972138 - 1973568 + | anchored-membrane serine/threonine-protein kinase PKNF (protein kinase F) (STPK F) Rv1747 1973630 - 1976227 + | transmembrane ATP-binding protein ABC transporter Rv1748 1976600 - 1977331 + | hypothetical protein Rv1749c 1977885 - 1977328 - | integral membrane protein fadD1 1979567 - 1977969 - | acyl-CoA synthetase TERM 1055 1978112 - 1978145 + g 83 -13.1 -3.767 | TGGCGGTGCTGGGAA GGTCGGCCGCGATGC GGAT GTATCGTGGCCGGGC TTTAGTGGATAGGTC Rv1751 1979621 - 1981003 + | hypothetical protein Rv1752 1981130 - 1981579 + | hypothetical protein PPE24 1984775 - 1981614 - | PPE family protein Rv1754c 1986670 - 1984979 - | hypothetical protein plcD 1987696 - 1986854 - | phospholipase C 4 PLCD Rv1756c 1988629 - 1987745 - | putative transposase Rv1757c 1989006 - 1988680 - | putative transposase cut1 1989042 - 1989566 + | cutinase Cut1 wag22 1992577 - 1989833 - | PE-PGRS family protein TERM 1056 1989881 - 1989907 + g 75 -9.3 -4.11484 | TACCAGCCCACCGGC GCCGCCGGCAC CCGCC GTGCCCCCGGC TTTTCCGGCATTGCC TERM 1057 1990606 - 1990571 - G 74 -12.4 -3.61398 | overlap 1990572 CCCGTTGGCGAACAA CCCGGCAGCGCCGCCA GTCC CGCCGGCGCCGCCAGT GGTAACGCCTGCGGT TERM 1058 1990605 - 1990572 - G 75 -15.9 -2.76696 | overlap 1990571 CCGTTGGCGAACAAC CCGGCAGCGCCGCCA GTCC CGCCGGCGCCGCCAG TGGTAACGCCTGCGG TERM 1059 1990687 - 1990670 - G 73 -14.1 -3.21099 | CGCGCCGATGAGCAA GCCGGCG TTCC CGCCGGC CCCGCCGACGCCGCC TERM 1060 1990796 - 1990757 - G 93 -17.8 -3.75105 | gap 1 GGAACCGATCAAGAA GGCGGAT-CCGCCGGCGCC ACC GGCCCCGCCGGCACCCGCC GTTCCGACGCCGCCG TERM 1061 1991541 - 1991499 - G 84 -16.9 -3.11316 | overlap 1991495 CCACCACCGAAGACA GTGCCGCCAGCCCCACCGG TGCCG CCGGCGCCACCGGCGGCAC CCAGGGAAAGCGTCC TERM 1062 1993077 - 1993093 + H 75 -12.3 -3.54129 | opp_overlap 1993058 1993055 GCCGGTGCCACCGGC GTCTGGG CAC CCCAGAC TTTCGCGCCGCTGTC Rv1760 1993153 - 1994661 + | hypothetical protein Rv1761c 1995054 - 1994671 - | hypothetical protein Rv1762c 1995842 - 1995054 - | hypothetical protein Rv1763 1996152 - 1996478 + | putative transposase Rv1764 1996529 - 1997413 + | putative transposase Rv1765c 1998515 - 1997418 - | hypothetical protein Rv1765A 1999357 - 1999142 - | transposase Rv1766 1999737 - 2000006 + | hypothetical protein Rv1767 2000074 - 2000433 + | hypothetical protein TERM 1063 2001271 - 2001306 + G 83 -13.8 -3.83262 | overlap 2001272 GGCGGGGTGGGCACC ACCGGTGGCGCCGGCG GGAA CGGCGGCGGCGCCGGG TTGTTCTACGGTTTC TERM 1064 2001272 - 2001305 + G 82 -17.3 -2.89234 | overlap 2001271 GCGGGGTGGGCACCA CCGGTGGCGCCGGCG GGAA CGGCGGCGGCGCCGG GTTGTTCTACGGTTT TERM 1065 2002223 - 2002281 + G 100 -22.3 -2.88571 | gap 1, overlap 2002227 2002229 2002260 TCGGCAACGGCGGGG CG-GGCGGGGCCGGCGGCGCCGGCGGCA TCGG TGCCGGCGGAGCCGGCGGCTTCGGCGCG GTTCTGTTTGGCAAC TERM 1066 2002227 - 2002282 + G 74 -10 -3.81488 | overlap 2002223 2002229 2002260 CAACGGCGGGGCGGG CGGGGCCGGCGGCGCCGGCGGCATCG GTGC CGGCGGAGCCGGCGGCTTCGGCGCGG TTCTGTTTGGCAACG PE_PGRS31 2000614 - 2002470 + | PE-PGRS family protein Rv1769 2002626 - 2003870 + | hypothetical protein Rv1770 2003878 - 2005164 + | hypothetical protein TERM 1067 2006372 - 2006408 + G 81 -12.4 -3.86346 | gap 2, overlap 2006398 GCAGTGGGATCGGTT CGCCGCGGTTCGCGATCG CCT CGATC-CGGACCG-GGTG TTTCTCAACGACTAC Rv1771 2005161 - 2006447 + | oxidoreductase Rv1772 2006636 - 2006947 + | hypothetical protein Rv1773c 2007766 - 2007020 - | transcriptional regulatory protein TERM 1068 2007047 - 2007079 + g 71 -3.4 -4.57569 | gap 2, overlap 2007048 2007049 GTCCGGCGAGTCCGC G-GCGGCGCGCAA-CG CGG CGATTATGCGCTGCTC TTTTTCCAGAAATCG TERM 1069 2008372 - 2008392 + G 87 -6.8 -5.06451 | gap 1, overlap 2008360 2008359 GATCTGTACTGGGCC GCCCGCGGC GCCG GTC-CGGGC TTTTTTGGCGTCGTC TERM 1070 2008666 - 2008638 - g 70 -13.1 -3.02144 | opp_overlap 2008630 2008630, overlap 2008647 TGACTCGCCCGAAGA GGCCGAACAGGCC CTC GCCCTGTTCGGCA CCTGCCCGGTTGTCG Rv1774 2007832 - 2009172 + | oxidoreductase Rv1775 2009172 - 2009990 + | hypothetical protein Rv1776c 2010555 - 2009995 - | transcriptional regulatory protein cyp144 2010656 - 2011960 + | cytochrome p450 144 CYP144 Rv1778c 2012530 - 2012081 - | hypothetical protein Rv1779c 2014479 - 2012686 - | integral membrane protein TERM 1071 2013180 - 2013193 + g 75 -4.5 -4.59773 | overlap 2013145 CACCCTCCGGTTGGA CCTGT GCCG GCAGG TTTTTCGCGATACCG TERM 1072 2014022 - 2014062 + g 91 -17 -3.71848 | overlap 2014025 TGCAGGGAGGCCGAC GCT-TGCACGGCCGCCGGCG TCG CGTCGGCG-CTGTGCATAGC TTGTTCATCGAGACG TERM 1073 2014025 - 2014058 + g 80 -17.5 -2.67428 | gap 1, overlap 2014022 AGGGAGGCCGACGCT TGCACGGCCGCCGGCG TCG CGTCGGCG-CTGTGCA TAGCTTGTTCATCGA Rv1780 2014699 - 2015262 + | hypothetical protein malQ 2017476 - 2015302 - | 4-alpha-glucanotransferase MalQ Rv1782 2017740 - 2019260 + | hypothetical protein Rv1783 2019257 - 2020564 + | hypothetical protein TERM 1074 2020931 - 2020945 + G 81 -11.4 -3.92373 | opp_overlap 2020927 2020930 CTCGAAGAAGACCAG GCGCTC ATG GAGCGC TTTCTGGATGCGCTG Rv1784 2020634 - 2023432 + | hypothetical protein cyp143 2024628 - 2023447 - | cytochrome P450 143 Rv1786 2024828 - 2025031 + | ferredoxin TERM 1075 2025583 - 2025599 + G 89 -10.1 -4.4648 | opp_overlap 2025535, overlap 2025568 GCCGCGGCGGCCGCG GCGGCTT ATG AGGCCGC TTTTGTGATGACGGT PPE25 2025301 - 2026398 + | PPE family protein PE18 2026477 - 2026776 + | PE family protein PPE26 2026790 - 2027971 + | PPE family protein TERM 1076 2028707 - 2028723 + G 89 -10.1 -4.4648 | opp_overlap 2028659, overlap 2028692 GCCGCGGCGGCCGCG GCGGCTT ATG AGGCCGC TTTTGTGATGACGGT PPE27 2028425 - 2029477 + | PPE family protein PE19 2029904 - 2030203 + | PE family protein esxN 2030694 - 2030978 + | putative ESAT-6 like protein ESXN (ESAT-6 like protein 5) TERM 1077 2030995 - 2031026 + F 72 -13.8 -2.80994 | opp_overlap 2030986, overlap 2030986 2030997 ACTGAACTTCAGTCG CGGCAGCACACC AACCAGCC GGTGTGCTGCTG TGTCCTGCAGTTAAC TERM 1078 2030997 - 2031024 + F 70 -12.8 -2.95223 | opp_overlap 2030986, overlap 2030995 2030986 TGAACTTCAGTCGCG GCAGCACACC AACCAGCC GGTGTGCTGC TGTGTCCTGCAGTTA Rv1794 2031066 - 2031968 + | hypothetical protein Rv1795 2032240 - 2033751 + | hypothetical protein TERM 1079 2035106 - 2035125 + G 79 -7.8 -4.56775 | CCGGATAATTCGTTG CTGGTTCC GGCT GGCACCAG TTTTTCCGCCGCGAT mycP5 2033729 - 2035486 + | proline rich membrane-anchored mycosin MYCP5 (serine protease) (subtilisin-like protease) (subtilase-like) (mycosin-5) TERM 1080 2035522 - 2035537 + G 72 -11.8 -3.5812 | overlap 2035520 TTGGCGTTGTCGTGG CCGCGG GTGA CCGCGG TGTTTCTGGTGGATG Rv1797 2035483 - 2036703 + | hypothetical protein Rv1798 2036700 - 2038532 + | hypothetical protein TERM 1081 2038997 - 2039024 + F 71 -13.4 -2.63164 | gap 1, opp_overlap 2038971, overlap 2038996 CTTCGTGTGACGCAC GGCGGGCGACGGC GGC GCCGT-GCCCGGC ATTGGTTGGGTGTCA lppT 2039159 - 2039350 + | lipoprotein LppT PPE28 2039453 - 2041420 + | PPE family protein TERM 1082 2042584 - 2042563 - g 74 -10.1 -3.85698 | gap 1, overlap 2042564 CCGCCGTCGCACAAA CCGCC-GCCA CCG CGGCCGGCGG CAACCTGCAATCGGC PPE29 2042001 - 2043272 + | PPE family protein TERM 1083 2043699 - 2043735 + G 86 -18 -3.01712 | gap 1, overlap 2043703 2043704 GCAGCCACGGTGCCG CCGCCGG-TCGTCGCGG CCAA CCGCGCCGAGCTGGCGG TGTTGGCGGCGACCA TERM 1084 2043703 - 2043753 + G 85 -10.2 -4.18018 | overlap 2043699 2043704 CCACGGTGCCGCCGC CGGTCGTCGCGGCCAACCGCGCCG AGC TGGCGGTGTTGGCGGCGACCAACA TTTTCGGTCAGAACA TERM 1085 2043704 - 2043752 + G 73 -13.7 -3.10597 | overlap 2043699 2043703 CACGGTGCCGCCGCC GGTCGTCGCGGCCAACCGCGCCG AGC TGGCGGTGTTGGCGGCGACCAAC ATTTTCGGTCAGAAC PPE30 2043384 - 2044775 + | PPE family protein PE_PGRS32 2046842 - 2044923 - | PE-PGRS family protein Rv1804c 2047349 - 2047023 - | hypothetical protein Rv1805c 2048034 - 2047687 - | hypothetical protein PE20 2048072 - 2048371 + | PE family protein PPE31 2048398 - 2049597 + | PPE family protein PPE32 2049921 - 2051150 + | PPE family protein TERM 1086 2051615 - 2051577 - g 88 -16.7 -3.72576 | gap 1, opp_overlap 2051605 TGGTCGCCTACGAAA CCGCGTTC-GCGGCGGTG GTGC CACCGCCGCAGATTGCGG CCAACCGCAGCCAGC PPE33 2051282 - 2052688 + | PPE family protein Rv1810 2052933 - 2053289 + | hypothetical protein mgtC 2053443 - 2054147 + | Mg2+ transport P-type ATPase C Rv1812c 2055359 - 2054157 - | dehydrogenase Rv1813c 2056112 - 2055681 - | hypothetical protein TERM 1087 2057115 - 2057144 + G 73 -15.1 -2.87132 | opp_overlap 2057104, overlap 2057117 AATACCCCGTCGCAC CACCGGGTCCA CCACGGAA TGGACCCGGTG TATCTGGACAAGAAC erg3 2056521 - 2057423 + | membrane-bound C-5 sterol desaturase erg3 (sterol-c5-desaturase) Rv1815 2057528 - 2058193 + | hypothetical protein Rv1816 2058256 - 2058960 + | transcriptional regulatory protein TERM 1088 2059746 - 2059789 + G 70 -11.7 -3.35679 | gap 1 TACTGGTGCTCGAAC GTGCCGCCGCGGCGGGCG GCACCACCG CGCTTGCCGGGG-GGCAC TTCTACCTGGGGGGC Rv1817 2059595 - 2061058 + | hypothetical protein PE_PGRS33 2062674 - 2061178 - | PE-PGRS family protein TERM 1089 2061775 - 2061729 - G 70 -13.4 -3.04461 | CACCGACGCCGAACA GCCCACCGGCCCCGCCGGCACC ACC GGGCCCGCCGGGGGCGGTGCCC AGGAATGCCACACCG TERM 1090 2062246 - 2062191 - G 100 -19.5 -3.01712 | CGCCGTTGCCGAACA GGCCAGCGGCTCCGCCGTTGCCCCC GGGCAT GCCGGCCGCGCCGGAGCCGCCGGCC CCGCCGTTGCCGATC TERM 1091 2062555 - 2062516 - G 83 -13.4 -3.78934 | overlap 2062517 GTGTCCGGAGAACAA TGCCGCCATCGCCGCCGA CACC TCATCGGCGGCGGCGGCC AACACCGTCGTGGTC TERM 1092 2062554 - 2062517 - G 82 -16.9 -2.87146 | overlap 2062516 TGTCCGGAGAACAAT GCCGCCATCGCCGCCGA CACC TCATCGGCGGCGGCGGC CAACACCGTCGTGGT Rv1819c 2064728 - 2062809 - | drugs-transport transmembrane ATP-binding protein ABC transporter TERM 1093 2064780 - 2064755 - H 76 -6.8 -4.40003 | opp_overlap 2064756, overlap 2064751 2064756 CCTCACAAACAGAAA TCCTTCGGGC GAAGGT ACCCGAAGGT TGTCGATAGGCTGCC TERM 1094 2066094 - 2066074 - g 74 -12.5 -3.53012 | opp_overlap 2066070 2066068 GCCCTGGCTGCCAAA CTGGCGCGG CCG CAGCGCCAG GTCGTGCTCTTGCAG ilvG 2064799 - 2066442 + | hypothetical protein secA2 2066457 - 2068883 + | preprotein translocase subunit SecA pgsA2 2069080 - 2069709 + | CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase Rv1823 2069702 - 2070625 + | hypothetical protein TERM 1095 2070985 - 2071004 + G 70 -10.6 -3.62046 | opp_overlap 2070985 GCATCTTCGGCAACA CCGCGGCC TTGC GGCGGCGG TTGTTCGGAGCGTGA Rv1824 2070654 - 2071019 + | hypothetical protein Rv1825 2071036 - 2071914 + | hypothetical protein gcvH 2071952 - 2072356 + | glycine cleavage system protein H cfp17 2072596 - 2073084 + | hypothetical protein Rv1828 2073081 - 2073824 + | hypothetical protein Rv1829 2073943 - 2074437 + | hypothetical protein TERM 1096 2074632 - 2074600 - f 71 -13.4 -2.57344 | gap 2, opp_overlap 2074613 2074614 2074617, overlap 2074599 GAGGCGCGCGATAAG GCCGAGCGCGGCGACG ATG CG-CGCCGCGA-CGGC GAGCATCCATTATTT TERM 1097 2074613 - 2074641 + F 71 -8.7 -3.90744 | opp_overlap 2074600 2074599, overlap 2074614 2074617 AGGCCGAGCGCGGCG ACGATGCGCGCCG CGA CGGCGAGCATCCA TTATTTGCCGGCCAG Rv1830 2074841 - 2075518 + | hypothetical protein Rv1831 2075571 - 2075828 + | hypothetical protein TERM 1098 2077996 - 2078024 + G 77 -11 -3.86897 | gap 1 GCCCAGGCGTCGGCC CGGTGGC-GGTGC GGGC GCACCTGGCACCG TTTCTGCCAGGTCAC gcvB 2075877 - 2078702 + | glycine dehydrogenase Rv1833c 2079789 - 2078929 - | haloalkane dehalogenase TERM 1099 2079219 - 2079262 + g 79 -16.8 -2.52543 | gap 1 CCGCGGCGTTGGGCT GCACCGCCCG-GTAGTGCG CCATCAC CGCGCTACTCGGCCGGTGC TCGGTTCCCGCGGGT Rv1834 2079830 - 2080696 + | hydrolase Rv1835c 2082587 - 2080701 - | hypothetical protein Rv1836c 2084636 - 2082603 - | hypothetical protein TERM 1100 2082969 - 2083017 + g 79 -16.5 -3.07344 | GGCCGTCAAGGCCGC GGGGCGGGGCTGGCCGTTGACCG GGT CGGCCAATGGCCCGGCCGGCACC TCTGTTCGGCCCTCG TERM 1101 2084386 - 2084364 - G 73 -11.2 -3.75332 | overlap 2084366 ATGTCCGAAGCGAAA CAGCGGCGGC GGG GCGGCCGCTA TGGGCTCGGCACCCG TERM 1102 2084384 - 2084366 - G 70 -11.6 -3.46068 | overlap 2084364 GTCCGAAGCGAAACA GCGGCGGC GGG GCGGCCGC TATGGGCTCGGCACC TERM 1103 2084775 - 2084797 + r 71 -13.4 -2.57132 | overlap 2084774 CGGGCCGCATCGTCA CCGGCCCTGT CCG ATGGGGCCGG CTTCTCAGCGGCCCG glcB 2086981 - 2084756 - | malate synthase G TERM 1104 2085370 - 2085393 + g 76 -2.2 -4.96848 | opp_overlap 2085358, overlap 2085357 2085379 GAACCCAGGCGGTGC TGGCCCCGGC GCGC GGCTGGGCGA TTTTTGTCTCGACCA TERM 1105 2086456 - 2086428 - G 89 -17.5 -3.51232 | overlap 2086424 GCGTCGCCAAAGGAA CCCGACGACAGCG GAA CACTGTCGTCGAG GAACTTGCGGGCATA TERM 1106 2087195 - 2087246 + r 84 -17.2 -2.72344 | gap 1, opp_overlap 2087197, overlap 2087197 2087238 GTTCTGGCCGGACAG CATC-CCGCCGGGAGCGGCTCCGGC CAC GTCGGTGCCGCTCATTGCGGCGGTG TGATTCCGAATCAGG TERM 1107 2087197 - 2087244 + r 74 -14 -2.90723 | gap 1, opp_overlap 2087197, overlap 2087195 2087238 TCTGGCCGGACAGCA TC-CCGCCGGGAGCGGCTCCGGC CAC GTCGGTGCCGCTCATTGCGGCGG TGTGATTCCGAATCA Rv1838c 2087652 - 2087257 - | hypothetical protein Rv1839c 2087912 - 2087649 - | hypothetical protein PE_PGRS34 2089518 - 2087971 - | PE-PGRS family protein TERM 1108 2089159 - 2089129 - G 75 -13.8 -3.25823 | GTTGCCGTACAGCAA CCCGCCGGGCCCGC CGG GCTGTCCCGGCGCG CCATTGGCGCCATCA Rv1841c 2090718 - 2089681 - | hypothetical protein TERM 1109 2090740 - 2090758 + r 71 -5.8 -4.26903 | overlap 2090741 CCCCGCCCCGACCCG GGGTCGGC ATG GCCGCCCA TTTTGATCAACTCCA Rv1842c 2092085 - 2090718 - | hypothetical protein guaB1 2093698 - 2092259 - | inositol-5-monophosphate dehydrogenase TERM 1110 2092799 - 2092837 + g 74 -12.2 -3.54424 | GGTGGTGCACATGGC GCCGGGGCCGACACCGAC CTT GACGACGTTCGCCCCGGC TTTCAGCAGATCCCG gnd1 2095188 - 2093731 - | 6-phosphogluconate dehydrogenase Rv1845c 2096168 - 2095218 - | hypothetical protein Rv1846c 2096599 - 2096183 - | transcriptional regulatory protein TERM 1111 2096821 - 2096857 + H 100 -21.7 -3.25823 | gap 1, overlap 2096821 CCCGGTCGACTCGAT C-GGCGAGCCCCGTGC CTTGGT GCACGGGGCTCGCCCG TTGGTGTAGACACAA TERM 1112 2096821 - 2096856 + H 100 -21.9 -2.55351 | overlap 2096821 CCCGGTCGACTCGAT CGGCGAGCCCCGTGC CTTGGT GCACGGGGCTCGCCC GTTGGTGTAGACACA Rv1847 2096877 - 2097299 + | hypothetical protein ureA 2097348 - 2097650 + | urease subunit gamma ureB 2097647 - 2097961 + | urease subunit beta ureC 2097961 - 2099694 + | urease subunit alpha ureF 2099694 - 2100329 + | urease accessory protein uref TERM 1113 2100627 - 2100579 - g 74 -16 -2.62184 | gap 1, overlap 2100561 GGTGCTGCCAGACGA CCGGATCGCGGCCGTGCAGACCG GCGG CTGCCCGCAC-ACCGCGATCCGC GACGACATCACCGCC ureG 2100340 - 2101014 + | urease accessory protein ureG ureD 2101022 - 2101648 + | urease accessory protein ureD ndh 2103042 - 2101651 - | NADH dehydrogenase Rv1855c 2104107 - 2103184 - | oxidoreductase Rv1856c 2104823 - 2104146 - | short chain dehydrogenase modA 2104985 - 2105770 + | molybdate-binding lipoprotein modB 2105773 - 2106567 + | molbdenum-transport integral membrane protein ABC transporter TERM 1114 2106592 - 2106614 + G 70 -11.3 -3.5764 | gap 1, overlap 2106602 AGCAAGCTGCAGCTG CGCGCGGTCG TCGC CGACCG-GCG TTTGGACGTCGAATT TERM 1115 2106878 - 2106861 - g 74 -5.5 -4.57073 | overlap 2106862 GAGCGTGGCCAAAAA CGTGGCC TTCG GACCACA ATGCCGTCGCGGGAT modC 2106574 - 2107683 + | molybdenum ABC transporter ATP-binding protein apa 2107736 - 2108713 + | hypothetical protein TERM 1116 2109040 - 2109015 - f 91 -9 -4.55023 | gap 1, opp_overlap 2109031, overlap 2109031 CTGAACAGCAGAAAA GCGCC-CACGA AAACA CCGTGGGGCGC CACACACGTTTGATC Rv1861 2109165 - 2109470 + | transmembrane protein adhA 2109544 - 2110584 + | alcohol dehydrogenase AdhA Rv1863c 2111361 - 2110591 - | integral membrane protein Rv1864c 2112109 - 2111354 - | hypothetical protein Rv1865c 2112966 - 2112106 - | short chain dehydrogenase Rv1866 2113140 - 2115476 + | hypothetical protein TERM 1117 2117245 - 2117196 - g 75 -15.8 -2.78384 | gap 2, overlap 2117182 CGGTGCGCGAGGACA TCGCCGGCGTCAAGGTTGCCGTCG CCCC CGACGGC-ACCGCGAC-CCTGCGA TAGCCGGCGGGCAGC Rv1867 2115764 - 2117248 + | acetyl-CoA acetyltransferase Rv1868 2117347 - 2119446 + | hypothetical protein Rv1869c 2120695 - 2119460 - | reductase TERM 1118 2120513 - 2120525 + g 84 -9.1 -4.56597 | GGTCTGGATGGTGAA GTCGC TCA GCGAC TTTTTGCCGGCCAGA Rv1870c 2121430 - 2120795 - | hypothetical protein Rv1871c 2121884 - 2121495 - | hypothetical protein lldD2 2123151 - 2121907 - | L-lactate dehydrogenase (cytochrome) LldD2 TERM 1119 2122306 - 2122263 - G 71 -12.2 -3.23393 | opp_overlap 2122261 2122259, overlap 2122261 CGTGATTGGACAACA CGATGCCGTCGACGCCGCGG TCCA CCACGGCGCGGGCGTCGTCG AGTGTTTGGATCCCT TERM 1120 2122795 - 2122753 - G 91 -12.7 -4.2349 | gap 2 GGTGGATAGCGAAAA CGGGATC-CCAGC-CGCGGCC GCC GCCCGCGCGCCGGCGATCTCG CCCTCGGTGTGCATC Rv1873 2123174 - 2123611 + | hypothetical protein Rv1874 2123684 - 2124370 + | hypothetical protein Rv1875 2124381 - 2124824 + | hypothetical protein bfrA 2125340 - 2125819 + | bacterioferritin Rv1877 2125904 - 2127967 + | integral membrane protein glnA3 2128022 - 2129374 + | glutamine synthetase Rv1879 2129377 - 2130513 + | hypothetical protein cyp140 2131857 - 2130541 - | cytochrome p450 140 CYP140 lppE 2132329 - 2131907 - | lipoprotein LppE Rv1882c 2133203 - 2132370 - | short chain dehydrogenase Rv1883c 2133692 - 2133231 - | hypothetical protein rpfC 2134261 - 2133731 - | resuscitation-promoting factor RpfC Rv1885c 2134872 - 2134273 - | chorismate mutase fbpB 2135867 - 2134890 - | secreted antigen 85-B fbpB (85B) (antigen 85 complex B) (Mycolyl transferase 85B) (fibronectin-binding protein B) (extracellular alpha-antigen) TERM 1121 2137162 - 2137127 - g 71 -12.6 -3.33492 | overlap 2137148 2137149 GCACGGAGCGCACAA GCCGACGCCACG TATCGCAAAGGC CGTGGCGCCGGC GGTGCCGCCTCCGCC TERM 1122 2137189 - 2137148 - g 70 -10.8 -3.61178 | overlap 2137127 2137149 GCCACGTATCGCAAA GGCCGTG-GCGCCGGCGGTG CCGC CTCCGCCGACGGTCACG-CC ACCAGTCCCTGCTCG Rv1887 2136258 - 2137400 + | hypothetical protein Rv1888c 2138079 - 2137519 - | transmembrane protein Rv1888A 2138617 - 2138444 - | hypothetical protein Rv1889c 2139017 - 2138661 - | hypothetical protein Rv1890c 2139687 - 2139076 - | hypothetical protein TERM 1123 2139865 - 2139897 + G 70 -3.5 -4.56597 | gap 3, overlap 2139868 ACTATGACGCTTCGC TGG-GCGC-CCCATGC TCCA GC-TGGGAGCGCTTCA TTTTTGGACGAGGCC Rv1891 2139741 - 2140148 + | hypothetical protein Rv1892 2140165 - 2140476 + | hypothetical protein Rv1893 2140486 - 2140704 + | hypothetical protein Rv1894c 2141869 - 2140739 - | hypothetical protein TERM 1124 2141790 - 2141772 - G 79 -8.8 -4.371 | CCGAGCACACCAAAA CCACCAGC TTT GCTGACGG CGACCACCACATCGC Rv1896c 2144446 - 2143535 - | hypothetical protein Rv1895 2142521 - 2143675 + | dehydrogenase Rv1897c 2144882 - 2144451 - | D-tyrosyl-tRNA deacylase Rv1898 2144940 - 2145248 + | hypothetical protein lppD 2146245 - 2145214 - | lipoprotein LppD TERM 1125 2146241 - 2146210 - G 72 -11.4 -3.54424 | overlap 2146195 GGTCAGCCCGGCAAA CCAGGACAACCGGG GCAA CCCGGCAGCCCGGG ACATTAGCGCGTGCG lipJ 2147633 - 2146245 - | lignin peroxidase LIPJ cinA 2147662 - 2148954 + | competence damage-inducible protein A nanT 2150274 - 2149006 - | sialic acid-transport integral membrane protein NanT TERM 1126 2150360 - 2150371 + H 74 -5.8 -4.46212 | TCCGTGGCAGGATCG GGCA ATGG TGCC TTTTCTGATGCGCGC Rv1903 2150364 - 2150768 + | hypothetical protein Rv1904 2150954 - 2151385 + | hypothetical protein aao 2152395 - 2151433 - | D-amino acid oxidase Rv1906c 2152895 - 2152425 - | hypothetical protein TERM 1127 2152526 - 2152551 + g 78 -14.7 -3.30159 | overlap 2152529 GTCCAGGAACTCCGG CAGGGGCAGCG CCTT CGCTGCCCGTG TTCTGCCAGGGTTGG TERM 1128 2152529 - 2152548 + g 71 -15 -2.52742 | overlap 2152526 CAGGAACTCCGGCAG GGGCAGCG CCTT CGCTGCCC GTGTTCTGCCAGGGT Rv1907c 2153882 - 2153235 - | hypothetical protein TERM 1129 2153802 - 2153851 + g 77 -13.4 -3.54029 | opp_overlap 2153806 2153808 2153809 2153811 ACAAATCGCGCCGGG CAAACACCAGCACCCCGCGAGC CGGTCA GCTCGCGGGGTGCTGCGGCGGG TTGTGGTTGATCGGC TERM 1130 2153847 - 2153806 - G 100 -22.3 -3.53091 | opp_overlap 2153802, overlap 2153808 2153809 2153811 ATCGCGCCGGGCAAA CACCAGCACCCCGCGAGCC GGTC AGCTCGCGGGGTGCTGCGG CGGGTTGTGGTTGAT TERM 1131 2153845 - 2153808 - G 100 -23.5 -3.34398 | opp_overlap 2153802, overlap 2153806 2153809 2153811 CGCGCCGGGCAAACA CCAGCACCCCGCGAGCC GGTC AGCTCGCGGGGTGCTGC GGCGGGTTGTGGTTG TERM 1132 2153844 - 2153809 - G 100 -27 -2.60496 | opp_overlap 2153802, overlap 2153808 2153806 2153811 GCGCCGGGCAAACAC CAGCACCCCGCGAGCC GGTC AGCTCGCGGGGTGCTG CGGCGGGTTGTGGTT TERM 1133 2153842 - 2153811 - G 100 -23.8 -2.84325 | opp_overlap 2153802, overlap 2153809 2153808 2153806 GCCGGGCAAACACCA GCACCCCGCGAGCC GGTC AGCTCGCGGGGTGC TGCGGCGGGTTGTGG katG 2156111 - 2153889 - | catalase-peroxidase-peroxynitritase T KATG furA 2156601 - 2156149 - | ferric uptake regulation protein furA (fur) Rv1910c 2157299 - 2156706 - | hypothetical protein lppC 2157987 - 2157382 - | lipoprotein LppC fadB5 2159091 - 2158087 - | oxidoreductase FADB5 Rv1913 2159191 - 2159943 + | hypothetical protein Rv1914c 2160328 - 2159921 - | hypothetical protein aceAa 2160463 - 2161566 + | isocitrate lyase aceAb 2161566 - 2162762 + | isocitrate lyase PPE34 2167311 - 2162932 - | PPE family protein PPE35 2170612 - 2167649 - | PPE family protein TERM 1134 2167941 - 2167922 - G 79 -7.8 -4.56597 | overlap 2167931 TCCGGCGTTGAAAAA GCCCAACG AGGG CGTTGCGC TCGAGTTGAAGTATC TERM 1135 2170079 - 2170023 - G 100 -24.5 -4.07568 | gap 1 GCCCGGCCGGCAAAA GTCGG-CATGCCCACGGCCGTGGTGA GCGCGG TCACCACGGCCGCGGGCCCGGCCGCC AGACCCGCCGGAAGC Rv1919c 2171525 - 2171061 - | hypothetical protein Rv1920 2171623 - 2172486 + | hypothetical protein lppF 2173795 - 2172524 - | lipoprotein LppF Rv1922 2174067 - 2175182 + | lipoprotein TERM 1136 2175501 - 2175513 + G 71 -9.1 -3.76224 | AAGGGTTGGCCGCAA CGGTG ATT CACCG TTTGGTCGATCGCGG TERM 1137 2175517 - 2175530 + G 76 -5.9 -4.46212 | GGTGATTCACCGTTT GGTCG ATCG CGGCC TTTTGTCCTACGACG lipD 2175173 - 2176513 + | lipase LIPD Rv1924c 2176930 - 2176550 - | hypothetical protein fadD31 2177087 - 2178949 + | acyl-CoA synthetase mpt63 2179436 - 2178957 - | immunogenic protein MPT63 (antigen MPT63/MPB63) (16 kDa immunoprotective extracellular protein) Rv1927 2179673 - 2180446 + | hypothetical protein Rv1928c 2181217 - 2180450 - | short chain dehydrogenase Rv1929c 2181906 - 2181262 - | hypothetical protein TERM 1138 2181420 - 2181364 - G 100 -20.2 -3.25223 | gap 2, overlap 2181360 2181365 GACGTACAGCAGCAA CTCGCCGGGCGGTCCGGTCAGGCGAGCC GTC GGCTCGCCTGACCGGACC-CTCACCC-G CTTACCGGTTCCAAC TERM 1139 2181421 - 2181365 - G 95 -20.7 -2.54812 | overlap 2181360 2181364 ACGTACAGCAGCAAC TCGCCGGGCGGTCCGGTCAGGCGAGCC GTC GGCTCGCCTGACCGGACCCTCACCCGC TTACCGGTTCCAACC Rv1930c 2182442 - 2181918 - | hypothetical protein Rv1931c 2183239 - 2182460 - | transcriptional regulatory protein TERM 1140 2182990 - 2182971 - G 72 -13.6 -3.13899 | overlap 2182969 AACTGCGCATGAAGA TCGGGTCG GCAT CGACCCGA ACGGCCGGAAATTCG tpx 2183372 - 2183869 + | thiol peroxidase fadE18 2184957 - 2183866 - | acyl-CoA dehydrogenase FADE18 fadE17 2186188 - 2184959 - | acyl-CoA dehydrogenase FADE17 echA13 2187159 - 2186203 - | enoyl-CoA hydratase Rv1936 2187384 - 2188493 + | monooxygenase TERM 1141 2189074 - 2189095 + G 74 -5.8 -4.52589 | opp_overlap 2189070 2189089 CGGTGACCATATCGC GCTGCGCT GCAGCA AGGGCAGC TTTTATCTGCGCCCG TERM 1142 2190006 - 2190060 + G 86 -16.3 -3.58343 | opp_overlap 2190010 2190011 2190038, overlap 2190007 CCTTCGACCGCGCCA ACAATGCCATCGTCGGCGTCGCCGT GGACA ATGGCGACGCCGACGGAGGCGACGG TTTGCAGGTGGTGCC TERM 1143 2190007 - 2190059 + G 93 -19.8 -2.74792 | opp_overlap 2190010 2190011 2190038, overlap 2190006 CTTCGACCGCGCCAA CAATGCCATCGTCGGCGTCGCCGT GGACA ATGGCGACGCCGACGGAGGCGACG GTTTGCAGGTGGTGC TERM 1144 2190056 - 2190010 - g 90 -17.9 -3.62046 | opp_overlap 2190007 2190006, overlap 2190011 2190038 CGACCGCGCCAACAA TGCCATCGTCGGCGTCGCCGT GGACA ATGGCGACGCCGACGGAGGCG ACGGTTTGCAGGTGG TERM 1145 2190055 - 2190011 - g 100 -21.4 -2.77013 | opp_overlap 2190007 2190006, overlap 2190010 2190038 GACCGCGCCAACAAT GCCATCGTCGGCGTCGCCGT GGACA ATGGCGACGCCGACGGAGGC GACGGTTTGCAGGTG Rv1937 2188496 - 2191015 + | oxygenase ephB 2191027 - 2192097 + | epoxide hydrolase EphB Rv1939 2192094 - 2192609 + | oxidoreductase ribA1 2192606 - 2193667 + | riboflavin biosynthesis protein ribA1 (GTP cyclohydrolase II) Rv1941 2193664 - 2194434 + | short-chain type dehydrogenase/reductase Rv1942c 2194973 - 2194644 - | hypothetical protein Rv1943c 2195347 - 2194970 - | hypothetical protein Rv1944c 2195934 - 2195344 - | hypothetical protein Rv1945 2195989 - 2197353 + | hypothetical protein lppG 2197960 - 2197508 - | lipoprotein TERM 1146 2198141 - 2198167 + G 81 -16.6 -3.16191 | opp_overlap 2198137 TTTCAGACCAAGCTC CACGTCAACGCC GGC GGCGCTGACGTG TTCCTGCCGGTCTGC Rv1947 2198024 - 2198425 + | hypothetical protein TERM 1147 2198571 - 2198552 - T 73 -8.6 -4.07568 | gap 1 TGTTGCGGCCGAAAA GGAAGC-GC TGC GCTGCTTCC AGTTCATGAACCAGG Rv1948c 2199064 - 2198714 - | hypothetical protein Rv1949c 2200034 - 2199075 - | hypothetical protein TERM 1148 2199295 - 2199320 + gr 71 -11.1 -3.40403 | GCGGGCGGGCTGACA CCGGGCGGAGG TAAG CCTTCGTTCGG TTGTGGTCCAGCGGG Rv1950c 2200189 - 2199998 - | hypothetical protein Rv1951c 2200486 - 2200190 - | hypothetical protein Rv1952 2200726 - 2200941 + | hypothetical protein Rv1953 2200938 - 2201249 + | hypothetical protein Rv1954c 2201744 - 2201223 - | hypothetical protein TERM 1149 2201275 - 2201257 - Gf 73 -6.6 -4.34402 | opp_overlap 2201260, overlap 2201258 GGTTTTAGACGAAAA GGACCCCA CCT CGGGGTCT GATGGCCAGGGGCAG Rv1955 2201584 - 2202096 + | hypothetical protein Rv1956 2202138 - 2202587 + | transcriptional regulatory protein Rv1958c 2203632 - 2203018 - | hypothetical protein Rv1957 2202584 - 2203129 + | hypothetical protein Rv1959c 2203977 - 2203681 - | hypothetical protein Rv1960c 2204225 - 2203974 - | hypothetical protein Rv1961 2204212 - 2204706 + | hypothetical protein Rv1962c 2205273 - 2204866 - | hypothetical protein mce3R 2206802 - 2205582 - | transcriptional repressor (probably TETR-family) MCE3R TERM 1150 2205757 - 2205707 - G 76 -14.7 -3.20723 | gap 1, overlap 2205702 CTTCGATGAAGCTAA TCGCCGCCGCGACCAGCAGTCGCC CCTG GGCGAC-ACTGGTCGCGGGTACCA GCTTGCCGATGAGGT yrbE3A 2207700 - 2208497 + | integral membrane protein YrbE3A yrbE3B 2208507 - 2209322 + | integral membrane protein YrbE3b mce3A 2209327 - 2210604 + | MCE-family protein MCE3A mce3B 2210601 - 2211629 + | MCE-family protein MCE3B TERM 1151 2211699 - 2211727 + G 72 -4.5 -4.56597 | gap 1, opp_overlap 2211718, overlap 2211700 TCGCCGCCGTTGCGC TGGCCGC-GCTG CAATAC CAGCGGCTGCCG TTTTTCAACCAGGGC mce3C 2211626 - 2212858 + | MCE-family protein MCE3C mce3D 2212855 - 2214126 + | MCE-family protein MCE3D lprM 2214123 - 2215256 + | MCE-family lipoprotein LprM mce3F 2215257 - 2216570 + | MCE-family protein MCE3F Rv1972 2216592 - 2217167 + | mce associated membrane protein Rv1973 2217164 - 2217646 + | MCE associated membrane protein Rv1974 2217659 - 2218036 + | hypothetical protein Rv1975 2218052 - 2218717 + | hypothetical protein Rv1976c 2219251 - 2218844 - | hypothetical protein Rv1977 2219754 - 2220800 + | hypothetical protein Rv1978 2220908 - 2221756 + | hypothetical protein Rv1979c 2223164 - 2221719 - | permease TERM 1152 2222777 - 2222736 - G 71 -9.6 -3.88291 | gap 2 CAGCACGCCGATAAA GCCGAGAAAC-G-TCAGCGT CTTC ACACTGAACAGTTGCTCGGC GTCGGCCCAGGCCTT TERM 1153 2223331 - 2223310 - R 72 -13.7 -2.71712 | overlap 2223309 TCCGCCGCCCCAAAT CCGCGCAGT GACC ACCGCGCGG TCCTCGCGAGTCTAG mpt64 2224029 - 2223343 - | immunogenic protein MPT64 (antigen MPT64/MPB64) nrdF 2225188 - 2224220 - | ribonucleotide-diphosphate reductase subunit beta Rv1982c 2225832 - 2225413 - | hypothetical protein TERM 1154 2226021 - 2225988 - H 72 -3.7 -4.62069 | gap 1, opp_overlap 2226006 2226010 GCGCGACTCCAAAAA CGCCAGCTGGGCAGAC AGG GCATGCCG-GATGGCG GCAGTCTTGCTGGTG PE_PGRS35 2226244 - 2227920 + | PE-PGRS family protein cfp21 2228561 - 2227908 - | cutinase precursor CFP21 Rv1985c 2229902 - 2228991 - | chromosome replication initiation inhibitor protein Rv1986 2230011 - 2230610 + | integral membrane protein Rv1987 2231026 - 2231454 + | chitinase Rv1988 2231680 - 2232219 + | methyltransferase Rv1989c 2233299 - 2232739 - | hypothetical protein Rv1990c 2233637 - 2233296 - | transcriptional regulatory protein Rv1990A 2234216 - 2233881 - | dehydrogenase Rv1991c 2234649 - 2234305 - | hypothetical protein ctpG 2237306 - 2234991 - | metal cation transporter P-type ATPase G CtpG Rv1993c 2237575 - 2237303 - | hypothetical protein Rv1994c 2237984 - 2237628 - | transcriptional regulatory protein Rv1995 2238141 - 2238908 + | hypothetical protein TERM 1155 2239400 - 2239417 + G 73 -14.1 -3.16881 | GGCTACCGAGGTCAG GGCGCCG TAGC CGGCGCC TTGCTGGGATCGGTC TERM 1156 2239493 - 2239517 + G 73 -12.7 -3.41051 | CCCGAGGAGCCGCGA CCGGCGCGCCC GCC GCACGCGCCGG TTGTGGTGGGCATCG Rv1996 2239004 - 2239957 + | hypothetical protein ctpF 2240159 - 2242876 + | metal cation transporter P-type ATPase A CtpF Rv1998c 2243721 - 2242945 - | hypothetical protein TERM 1157 2243241 - 2243227 - G 71 -9.2 -3.87815 | opp_overlap 2243240, overlap 2243230 GGCCAGTGGGACAAA GACGCC GTC GGCGCC GGCATCGACGTAGCG Rv1999c 2245138 - 2243816 - | integral membrane protein TERM 1158 2244562 - 2244542 - G 83 -8.2 -4.66833 | overlap 2244544 GGCGAACGCGAAAAA CAGCAGGC CGGCC GCCTGCAG CATCCCCCAGACGTG TERM 1159 2244560 - 2244544 - G 73 -9.4 -3.94933 | overlap 2244542 CGAACGCGAAAAACA GCAGGC CGGCC GCCTGC AGCATCCCCCAGACG TERM 1160 2245022 - 2244989 - G 80 -13.7 -3.73534 | overlap 2244996 CAACCCGAGCAACAA CCCAGAACCGGCCGC GTAC GCGGCCGGGGCCAGG GCGGCAAAGATTCCG TERM 1161 2245015 - 2244996 - G 85 -16.4 -3.48153 | overlap 2244989 AGCAACAACCCAGAA CCGGCCGC GTAC GCGGCCGG GGCCAGGGCGGCAAA Rv2000 2245209 - 2246822 + | hypothetical protein Rv2001 2246832 - 2247584 + | hypothetical protein fabG3 2247660 - 2248442 + | 20-beta-hydroxysteroid dehydrogenase Rv2003c 2249420 - 2248563 - | hypothetical protein TERM 1162 2249247 - 2249205 - G 95 -20.5 -2.64616 | GGGTGAGTCATACCA GGCGTCGTAGGCCGCCGCG TCGCG CCCGGCGGCCGACGATGCC GGCATCCGGGTGTCA Rv2004c 2250974 - 2249478 - | hypothetical protein TERM 1163 2249877 - 2249861 - G 75 -9.3 -4.13767 | opp_overlap 2249860 2249863 GCCCGGAGTCCAAAA CGCCGGG CTC CCCGGTG ATTACTCCGCAATCG Rv2005c 2251883 - 2250996 - | hypothetical protein TERM 1164 2253129 - 2253084 - g 79 -8.2 -4.3129 | gap 2 CAGCCATCACCAAAA CGCCGCCGCCACTGCAGCTATC GACG GATTG--GCCGAGGCGGCAGCG CAATTGGCCGACGCA otsB1 2252002 - 2255985 + | trehalose-6-phosphate phosphatase OtsB1 fdxA 2256428 - 2256084 - | ferredoxin FDXA TERM 1165 2256577 - 2256550 - R 74 -4.8 -4.63218 | gap 1 CGGGGTGCAAGAAAA CCG-GGGCGGT TCACCCG ACCGCCAGCGG GATTCACGCTCCCCC Rv2008c 2257942 - 2256617 - | hypothetical protein Rv2009 2258030 - 2258272 + | hypothetical protein Rv2010 2258273 - 2258671 + | hypothetical protein Rv2011c 2259285 - 2258854 - | hypothetical protein Rv2012 2259326 - 2259820 + | hypothetical protein TERM 1166 2260996 - 2261006 + GF 71 -3.2 -4.60924 | CGCCGATCAGCCTCG CGTT TTT GACG TTTTTGCCCCGTTTC Rv2013 2260665 - 2261144 + | transposase Rv2014 2261098 - 2261688 + | transposase Rv2015c 2263072 - 2261816 - | hypothetical protein Rv2016 2263426 - 2264001 + | hypothetical protein Rv2017 2263998 - 2265038 + | transcriptional regulatory protein Rv2018 2265280 - 2265999 + | hypothetical protein Rv2019 2265989 - 2266405 + | hypothetical protein Rv2020c 2266720 - 2266421 - | hypothetical protein Rv2021c 2267110 - 2266805 - | transcriptional regulatory protein Rv2022c 2267724 - 2267119 - | hypothetical protein Rv2023c 2268108 - 2267749 - | hypothetical protein TERM 1167 2268341 - 2268358 + r 71 -8.5 -3.87641 | overlap 2268330 TTTCCGACAGCGATC TGACGTT GCGT AACGTCA TTTGTACGGACTCTT Rv2024c 2270240 - 2268693 - | hypothetical protein TERM 1168 2269370 - 2269390 + g 70 -10.3 -3.72893 | opp_overlap 2269353, overlap 2269371 CCACGGTCAGGCCCT GGGCGCGCC TGC GGTGCGCCA TTTCGTGCAGCAATA TERM 1169 2269371 - 2269389 + g 71 -13.8 -2.83522 | opp_overlap 2269353, overlap 2269370 CACGGTCAGGCCCTG GGCGCGCC TGC GGTGCGCC ATTTCGTGCAGCAAT TERM 1170 2269619 - 2269580 - G 77 -12.1 -3.72742 | gap 2, opp_overlap 2269582 2269600, overlap 2269581 GCACCAGCAACAGAA TCCGCGCGC-T-GCCGCCG TTGT CGGCGGCGATGCGCTCGGC GATCTTGAGCGCGGT TERM 1171 2269618 - 2269581 - G 76 -15.6 -2.83163 | gap 2, opp_overlap 2269582 2269600, overlap 2269580 CACCAGCAACAGAAT CCGCGCGC-T-GCCGCCG TTGT CGGCGGCGATGCGCTCGG CGATCTTGAGCGCGG Rv2025c 2271748 - 2270750 - | hypothetical protein Rv2026c 2272747 - 2271863 - | hypothetical protein Rv2027c 2274508 - 2272787 - | histidine kinase response regulator TERM 1172 2273644 - 2273658 + g 77 -10 -3.90112 | CGATCGACGTTCCGC TGACGG CAA CCGTCA TTTGCTTGACCGCCG Rv2028c 2275408 - 2274569 - | hypothetical protein pfkB 2276424 - 2275405 - | phosphofructokinase PfkB (phosphohexokinase) TERM 1173 2276011 - 2275996 - G 81 -11.8 -3.96327 | ACTGGCCACCACAAA GGCGGC CGAA GCCGCC GCACCGCGCAGTTCG Rv2030c 2278486 - 2276441 - | hypothetical protein TERM 1174 2277070 - 2277086 + g 80 -9.4 -4.26076 | AATACACCTCTGCGT CGCGCA CCGTC TGCGCG TTTTGCTGGGCGTAG TERM 1175 2277806 - 2277765 - G 73 -14.4 -3.21395 | gap 1, overlap 2277763 ACTCTGCGCAGAACA TCGGCCGCCGTTGACGCCG CGGGC CGGCG-CAGCGACGGCCCA GCGGTCGGGGTGGCC hspX 2278932 - 2278498 - | heat shock protein hspX acg 2279129 - 2280124 + | hypothetical protein Rv2033c 2281082 - 2280240 - | hypothetical protein Rv2034 2281294 - 2281617 + | ArsR-type repressor protein Rv2035 2281614 - 2282102 + | hypothetical protein Rv2036 2282099 - 2282740 + | hypothetical protein Rv2037c 2283721 - 2282747 - | transmembrane protein Rv2038c 2284796 - 2283723 - | sugar-transport ATP-binding protein ABC transporter Rv2039c 2285641 - 2284799 - | sugar-transport integral membrane protein ABC transporter Rv2040c 2286530 - 2285628 - | sugar-transport integral membrane protein ABC transporter Rv2041c 2287846 - 2286527 - | sugar-binding lipoprotein TERM 1176 2287320 - 2287363 + g 72 -5.8 -4.30719 | CTCCATGGCCGTTCC CAGCTACCGGGCGGCGGTGG CACG CCGGCGTCGTCGAATAGCTG TTTGTTGTAGAACAA Rv2042c 2288681 - 2287884 - | hypothetical protein pncA 2289241 - 2288681 - | pyrazinamidase/nicotinamidas PNCA (PZase) Rv2044c 2289599 - 2289282 - | hypothetical protein lipT 2291220 - 2289685 - | carboxylesterase LipT TERM 1177 2289852 - 2289836 - G 74 -12.3 -3.54459 | opp_overlap 2289832, overlap 2289839 CCAATTTGGCTGAAA CAACGCC AGC GGCGTTG CACCTCGTTGCTGAC TERM 1178 2289849 - 2289839 - G 70 -8.2 -3.90922 | opp_overlap 2289832, overlap 2289836 ATTTGGCTGAAACAA CGCC AGC GGCG TTGCACCTCGTTGCT lppI 2291269 - 2291925 + | lipoprotein lppI Rv2047c 2294526 - 2291962 - | hypothetical protein pks12 2306986 - 2294531 - | polyketide synthase pks12 TERM 1179 2300620 - 2300594 - G 75 -11.5 -3.63515 | opp_overlap 2300614 CCCCACCCCGAAGAA GGCGGGGTCGA AGTCG CCGACCCCGTC CACAAAGCCGCCGGT TERM 1180 2300614 - 2300672 + g 100 -22.2 -3.48276 | opp_overlap 2300594 2300627 GGTCGAAGTCGCCGA CCCCGTCCACAAAGCCGCCGGTGCGGGT GTA GCACGCACCCGCGGCGTCGGGGTCGGGG TTGTATAGCCCGGCC TERM 1181 2300659 - 2300627 - G 91 -16.2 -3.86015 | opp_overlap 2300614 GACCCCGTCCACAAA GCCGCCGGTGCGGG TGTAG CACGCACCCGCGGC GTCGGGGTCGGGGTT TERM 1182 2307085 - 2307075 - R 73 -6.8 -4.37092 | overlap 2307076 2307078 AGTTGCTGCACAAAA CGAC GCC GTCG TACGGCGCTCTGGCG Rv2049c 2307517 - 2307293 - | hypothetical protein TERM 1183 2307908 - 2307886 - g 75 -15.6 -2.73681 | overlap 2307873 GACCGACCGCAACCA CGACCTGGCG CCG CGCCAGATCG CGCGGTACCGCACCG Rv2050 2307821 - 2308156 + | hypothetical protein ppm1 2310755 - 2308131 - | polyprenol-monophosphomannose synthase Ppm1 TERM 1184 2308758 - 2308816 + g 80 -16.8 -2.78384 | gap 3 GTGCATCACGTGGGT GCGGCCGGGATCGGC-CTGCGCCAGCTCG TCGG CGAGCTGGC-CGGTGCCG-TCGGGGCTGC TGTCGTCGACGACCA Rv2052c 2312517 - 2310913 - | hypothetical protein TERM 1185 2311258 - 2311246 - G 74 -10.5 -3.76224 | GGCCCAGGGATCAAA GCCCG TGA CGGGC GCGTCGGAGCCAAGC TERM 1186 2311779 - 2311721 - G 72 -7.3 -4.24342 | overlap 2311722 CCGTCGACGAACAAA TCACCGG-CCAGCCCTCGAGCCCCGGT CTCGGTC ACCAGGTCACG-GGCCTGGGCCGGCGT GGCCACGGCCTCACC fxsA 2313049 - 2312522 - | FxsA TERM 1187 2313185 - 2313207 + G 73 -14.8 -2.83715 | CTGCTGGGCCTTCCC CCCGGCCAGG GCC CGTGGCCGGG TGTGGTGGTGGTGCA Rv2054 2313125 - 2313838 + | hypothetical protein TERM 1188 2314001 - 2313989 - T 74 -4.7 -4.57569 | opp_overlap 2313982 2313990 2313994, overlap 2313990 2313991 TCAGCTGGCGAAAAA TGCGC GCG GCGCC CTCTTCGTTGCCTGA rpsR 2314353 - 2314087 - | 30S ribosomal protein S18 rpsN 2314659 - 2314354 - | 30S ribosomal protein S14 rpmG 2314825 - 2314661 - | 50S ribosomal protein L33 rpmB 2315061 - 2314825 - | 50S ribosomal protein L28 TERM 1189 2314855 - 2314891 + g 70 -8.6 -3.93236 | gap 1, overlap 2314852 CTGGCGACGCAGGCG GGCCA-CGACCGCTTCG ATAC CGTCGCGGTCGATGACC TTTATACCCTTCGTG TERM 1190 2316541 - 2316561 + G 70 -11.1 -3.55444 | overlap 2316502 2316560 TCGCCGCGATCGCGA CCTCGGTGG TCT TCGCCGAGG TTTCCGCCGTCGGCG Rv2060 2316279 - 2316680 + | integral membrane protein Rv2059 2315174 - 2316709 + | hypothetical protein Rv2061c 2317085 - 2316681 - | hypothetical protein TERM 1191 2317154 - 2317112 - R 100 -27.3 -2.78596 | gap 1, opp_overlap 2317112 2317119, overlap 2317099 2317119 TACCGCGCGAGCAGA CGCAGAATCGCACTGCGCGG GGTC CCGCGCA-TGCGATTCTGCG TCTGCTCGCCGTACT TERM 1192 2317112 - 2317154 + r 100 -27.3 -2.79302 | gap 1, opp_overlap 2317099 2317112 2317119, overlap 2317119 TACCGCGCGAGCAGA CGCAGAATCGCACTGCGCGG GGTC CCGCGCA-TGCGATTCTGCG TCTGCTCGCCGTACT TERM 1193 2317147 - 2317119 - R 85 -15.4 -3.40299 | gap 1, opp_overlap 2317112 2317119, overlap 2317099 2317112 CGAGCAGACGCAGAA TCGCACTGCGCGG GGTC CCGCGCA-TGCGA TTCTGCGTCTGCTCG TERM 1194 2317119 - 2317147 + r 85 -15.4 -3.40299 | gap 1, opp_overlap 2317099 2317119 2317112, overlap 2317112 CGAGCAGACGCAGAA TCGCACTGCGCGG GGTC CCGCGCA-TGCGA TTCTGCGTCTGCTCG cobN 2320753 - 2317169 - | cobaltochelatase TERM 1195 2317492 - 2317518 + g 72 -15.1 -2.78384 | opp_overlap 2317508 TCCACCTCGGATTGA CCACGCGGGCG CGAAA CACCCGCGTGG TCTCCTCCGACAGCG TERM 1196 2318087 - 2318036 - G 70 -2.1 -4.68593 | gap 3 GGCATCACGGAAAAA GCCGG-AGATCCGTACCGTCACGTCG ATG CG-CGGG-CGGCCCAGCTCGGCCGGC TGCATGGGCGCCAGG TERM 1197 2320067 - 2320088 + g 72 -14.4 -3.05384 | GCTGTCATCGTCGCC GCCGGCCG AGGCGG CGGCCGGC TTGACTCCCCCGGCG Rv2063 2320831 - 2321064 + | hypothetical protein TERM 1198 2321590 - 2321565 - g 93 -19.1 -3.2963 | ATCACCGCGGCACAA CTGGCGACGCT GGCC AGCGTCGCCAG CGACTTCGGCTCCGC cobG 2321451 - 2322542 + | cobalamin biosynthesis protein CobG TERM 1199 2323007 - 2323039 + G 77 -12.7 -3.74693 | gap 1, opp_overlap 2322999 CGACGAAGGGGCACC CCCACCGG-CGGCC GTGCTG GGCGGACCGGTGGG TTTCGTCGGATCGGC cobH 2322552 - 2323178 + | precorrin-8X methylmutase Rv2067c 2325870 - 2324647 - | hypothetical protein cobI 2323175 - 2324701 + | bifunctional S-adenosyl-L-methionine-precorrin-2 methyl transferase/precorrin-3 methylase Cob I/J blaC 2326809 - 2325886 - | class A BETA-lactamase BLAC sigC 2326944 - 2327501 + | RNA polymerase sigma factor SigC cobK 2328225 - 2327491 - | cobalt-precorrin-6x reductase cobM 2328977 - 2328222 - | precorrin-4 C11-methyltransferase CobM TERM 1200 2328657 - 2328643 - G 72 -8.5 -4.07568 | GCGGCTGCGGCAAAA GCCGG TACGC CCGGC ACGATTTCGTAGCCG cobL 2330146 - 2328974 - | precorrin-6y methyltransferase CobL TERM 1201 2329245 - 2329219 - G 85 -5.1 -5.07486 | gap 1, overlap 2329220 2329223 CACCGCCAAGAAAAA TCACCGACGGCC GTGC GGC-GTCGTCGA ACGCATCGGGCGCGT Rv2073c 2330963 - 2330214 - | shortchain dehydrogenase Rv2074 2330993 - 2331406 + | hypothetical protein Rv2075c 2332879 - 2331416 - | hypothetical protein Rv2076c 2333288 - 2333037 - | hypothetical protein Rv2077c 2334294 - 2333323 - | transmembrane protein TERM 1202 2333671 - 2333728 + g 70 -11.1 -3.54488 | gap 1, opp_overlap 2333658 GATCGGATCGGAGTA CGGTCCGTCGGCTCCACCGGACGGGTGT GGC GCTCCTGGC-GGTGGAGGTGTTGGGCCG TCTTGTTTGAAGAAG TERM 1203 2333912 - 2333942 + g 75 -6.8 -4.3586 | gap 1, overlap 2333910 TGAGCCTGAGCTAGT CGA-GCGGCCTGC ACTGCA GCCGGCTGCGTCG TTTTGGTGTCGGTGA Rv2077A 2334594 - 2334295 - | hypothetical protein Rv2078 2335059 - 2335373 + | hypothetical protein Rv2079 2335355 - 2337325 + | hypothetical protein lppJ 2337306 - 2337869 + | lipoprotein LppJ Rv2081c 2338505 - 2338065 - | transmembrane protein Rv2082 2338709 - 2340874 + | hypothetical protein Rv2083 2340871 - 2341815 + | hypothetical protein TERM 1204 2342592 - 2342612 + G 74 -7.5 -4.1899 | GCGACGCTCGCACGC TGCTGACCG ATC TGGACAGCA TTTTGCGTGAGATGC Rv2084 2341808 - 2342944 + | hypothetical protein Rv2085 2343027 - 2343332 + | hypothetical protein Rv2086 2343311 - 2343916 + | hypothetical protein Rv2087 2343994 - 2344224 + | hypothetical protein TERM 1205 2344971 - 2344985 + G 70 -6.4 -4.25104 | overlap 2344972 TGCTGCGCCGGAAGT TCTTGC AGG GCAAGG TTTTGATGGCCGGGC TERM 1206 2345676 - 2345643 - g 81 -8.1 -4.63527 | gap 1, overlap 2345644 2345645 TGATGACGTCAAAAA CTTCGTGGGCATCCAG AAC CTGGTCGCCCATG-AG CCAATGCTTCAACCC pknJ 2344411 - 2346180 + | transmembrane serine/threonine-protein kinase J pepE 2347324 - 2346197 - | dipeptidase PepE TERM 1207 2347149 - 2347132 - G 77 -14.1 -3.40403 | GCCGCGGCAGCACAA CCGCCGG CGCA CCGGCGG CCGGCAACACCAACG Rv2090 2347373 - 2348554 + | 5'-3' exonuclease TERM 1208 2348543 - 2348531 - T 74 -2.6 -4.91109 | GCGCGACTACAAAAA GCGC TCGAC ACGC TGCCCGGATGACGAT Rv2091c 2349292 - 2348558 - | hypothetical protein helY 2352054 - 2349334 - | ATP-dependent DNA helicase HelY tatC 2353029 - 2352103 - | Sec-independent protein translocase transmembrane protein tatC TERM 1209 2352541 - 2352526 - G 85 -5.4 -5.07486 | GACGGTCAACAAAAA GCCCAA CGCC TTGGAC AACACCAGGTAGGCC tatA 2353297 - 2353046 - | twin argininte translocase protein A Rv2095c 2354315 - 2353365 - | hypothetical protein TERM 1210 2353889 - 2353909 + g 78 -10.3 -4.06678 | TCCGCACCGCGGCCC GTACGGCCG CGG CGGCCGGGC TTTCTGTGGGTGCCT Rv2096c 2355310 - 2354312 - | hypothetical protein Rv2097c 2356677 - 2355319 - | hypothetical protein TERM 1211 2355495 - 2355524 + g 70 -6.4 -4.258 | gap 1, overlap 2355497 GCCGGGCCCGGGTGG TCTGTGGGGGCTG ATCGA CGGCCTCCGC-GA TTTCTTCGTCGGTGG TERM 1212 2356903 - 2356872 - H 77 -13.6 -3.38812 | opp_overlap 2356893 2356896, overlap 2356870 2356873 CGTCGCCGAACAAGA TGGCGGTGCCGCCG TGCC CGCCGACACCGCCC GGCCCGCCGGGCGAG TERM 1213 2356902 - 2356873 - H 83 -17.1 -2.63073 | opp_overlap 2356893 2356896, overlap 2356870 2356872 GTCGCCGAACAAGAT GGCGGTGCCGCCG TGCC CGCCGACACCGCC CGGCCCGCCGGGCGA TERM 1214 2356896 - 2356924 + H 70 -12.3 -3.14132 | opp_overlap 2356873 2356870 2356872, overlap 2356893 CGCCGTGCCCGCCGA CACCGCCCGGCCC GCC GGGCGAGGTGGTG TTCATGCCGGGCCCC TERM 1215 2358809 - 2358830 + G 79 -7.9 -4.43844 | GCGGCGTTGTTTTTG GCCGGGCAT CTTG GTGCGCGGC TTTTCTCGATCATCG Rv2100 2358389 - 2360041 + | hypothetical protein TERM 1216 2360162 - 2360142 - f 71 -9.7 -3.68569 | overlap 2360145 2360148 GCACCTATCCAAGAA GACCAACCG CTA CGATCGGTC GATGTCGCGGCGCCG TERM 1217 2361034 - 2361055 + G 77 -12.3 -3.63627 | gap 1 CGTCGGTATCGGCAC CGTCGGCCCG GCG CGGGC-GACG TTTCGGCTGTCCGAA TERM 1218 2361845 - 2361874 + G 77 -3.4 -4.9218 | overlap 2361846 2361847 GCGACGCTGCGTCCC TACCAGCAGCGC GGTCTG GCGTGGCTGGCG TTTTTGTCCTCGCTC helZ 2360240 - 2363281 + | helicase HelZ Rv2102 2363391 - 2364107 + | hypothetical protein Rv2103c 2364520 - 2364086 - | hypothetical protein Rv2104c 2364781 - 2364527 - | hypothetical protein TERM 1219 2365118 - 2365140 + H 76 -13.4 -3.23979 | overlap 2365135 ACGGGAAGTCCTTCT GCGGCCATCG TTG CTATGGCCGC TTACTGCCTTCTAGT TERM 1220 2365381 - 2365395 + H 84 -4.2 -5.24129 | ACCGACTCCACTCTA GCTAGT GAT ACAAGC TTTTTTGTAGCCGCG Rv2105 2365465 - 2365791 + | transposase Rv2106 2365788 - 2366726 + | transposase PE22 2367359 - 2367655 + | PE family protein PPE36 2367711 - 2368442 + | PPE family protein prcA 2369729 - 2368983 - | proteasome (alpha subunit) PrcA prcB 2370601 - 2369726 - | proteasome (beta subunit) PrcB Rv2111c 2370792 - 2370598 - | hypothetical protein TERM 1221 2370720 - 2370772 + g 86 -16.9 -3.32727 | overlap 2370716 2370721 CGCGACGCTCCTGGC CCGCGGCGGTGCTGCCGGCGATG TCGTCAT CATCGCCGCCGCCACCGCCACGC TTGGTCTGCTCTTGC TERM 1222 2370721 - 2370771 + g 95 -20.4 -2.59154 | overlap 2370716 2370720 GCGACGCTCCTGGCC CGCGGCGGTGCTGCCGGCGATG TCGTCAT CATCGCCGCCGCCACCGCCACG CTTGGTCTGCTCTTG TERM 1223 2370826 - 2370856 + r 73 -8.1 -4.05033 | opp_overlap 2370826, overlap 2370830 CATGGCCTTTCAAAA GGCCGCGGGTGCG CGTCA CACGCCCGCTGTC TTTCTCTACCCTACC Rv2112c 2372569 - 2370905 - | hypothetical protein TERM 1224 2372541 - 2372493 - G 75 -13.5 -3.39895 | overlap 2372494 GCGGGCATCAAGCAA CGCCCGCCGACGATGCGGGCCGC GCA GCGGGCCGCTGAGGAGGCGGGCA TCAAGCAAGGCCCGC TERM 1225 2372540 - 2372494 - G 71 -14.8 -2.63723 | overlap 2372493 CGGGCATCAAGCAAC GCCCGCCGACGATGCGGGCCGC GCA GCGGGCCGCTGAGGAGGCGGGC ATCAAGCAAGGCCCG Rv2113 2372630 - 2373823 + | integral membrane protein TERM 1226 2374021 - 2374011 - g 76 -8.2 -4.21607 | overlap 2374007 GCCACCGAACACAAA GCGG CCA CCGC CCTGCTCAACGGTCC Rv2114 2373834 - 2374457 + | hypothetical protein Rv2115c 2376290 - 2374461 - | ATPase TERM 1227 2375332 - 2375350 + g 75 -4.4 -4.63218 | opp_overlap 2375310, overlap 2375334 GCCTCGTGGGCATCG TCGCCGCG GAC CTCGGCCA TTTTCTTGGCCAACG lppK 2376571 - 2377140 + | lipoprotein lppK Rv2117 2377148 - 2377441 + | hypothetical protein Rv2118c 2378312 - 2377470 - | RNA methyltransferase Rv2119 2378386 - 2379222 + | hypothetical protein Rv2120c 2379727 - 2379245 - | integral membrane protein hisG 2380660 - 2379806 - | ATP phosphoribosyltransferase hisE 2380944 - 2380663 - | phosphoribosyl-ATP pyrophosphatase PPE37 2381071 - 2382492 + | PPE family protein metH 2386067 - 2382489 - | 5-methyltetrahydrofolate--homocystein methyltransferase TERM 1228 2382999 - 2382975 - G 82 -4.8 -4.91712 | overlap 2382979 GGCAATGCACAAAAA CCGACCGCGC TGCTG GCGCGGGAAG TGAAACCGGTAGCGC TERM 1229 2386204 - 2386161 - H 86 -16.8 -3.22102 | gap 1, overlap 2386159 ACAGCTGCCACAAGA GTCTCAGCTGAGGCAGGCACA CAA CGTGCCCACCTCAGC-GCGAC AAAGCGTGGCCATCG Rv2125 2386293 - 2387171 + | hypothetical protein PE_PGRS37 2387972 - 2387202 - | PE-PGRS family protein TERM 1230 2387519 - 2387487 - G 72 -14.1 -3.05384 | overlap 2387505 GCCGCGGCCACCGAA GGCGTTACCACCCCC AAA GGCGCTGGCAACGCC GCCGCCACCGGTCCC TERM 1231 2389136 - 2389156 + G 90 -2.6 -5.40072 | gap 1, overlap 2389127 2389136 2389137 TTCTCGCGCTGATGG C-GTTCCTA GTGG TGGGAACCG TTTTTTTGGCCGGGC TERM 1232 2389341 - 2389386 + G 81 -8.2 -4.54047 | opp_overlap 2389341 CGCCGAGCCGGAGAA GATCATGCCGCGGGCGATCA ATTCGG TGGTCGCTCGCATCGCGATC TTTTATGTCGGGTCG ansP1 2388616 - 2390085 + | L-asparagine permease ansP1 Rv2128 2390085 - 2390288 + | transmembrane protein Rv2129c 2391189 - 2390308 - | short chain dehydrogenase TERM 1233 2391019 - 2391066 + g 72 -14 -2.97171 | overlap 2391016 2391021 GTCGGCTACCACGGT GAGTAGGCGGTCGTCGCCGCCG AGTT CGGCGCCCATCACCGCCAGCTC TGATTTGCTCAGGTC cysS 2392459 - 2391215 - | cysteinyl-tRNA synthetase cysQ 2393320 - 2392517 - | monophosphatase CysQ Rv2132 2393411 - 2393641 + | hypothetical protein Rv2133c 2394639 - 2393851 - | hypothetical protein TERM 1234 2393929 - 2393945 + g 78 -13.7 -3.59979 | CAGCGATTGCGCGCG TCGGCGC AGC GCGCCGA TTTCGGCTGCGGCGA Rv2134c 2395237 - 2394650 - | hypothetical protein Rv2135c 2396011 - 2395301 - | hypothetical protein TERM 1235 2395719 - 2395737 + g 75 -3 -4.84359 | overlap 2395690 2395689 ACCCGCCACAACGGC TCGTCGAC CAG GTCACCGA TTTTTCTGCCAGTCC uppP 2396838 - 2396008 - | undecaprenyl pyrophosphate phosphatase TERM 1236 2396132 - 2396110 - G 79 -11.2 -3.96148 | GTGTCGCACCAGAAA CCGCAGCAGC CAG GCCACCGCGG TCAGACCGAGGACGA Rv2137c 2397315 - 2396902 - | hypothetical protein TERM 1237 2397626 - 2397651 + G 79 -4.7 -4.82901 | gap 1 CATCATGGTCTTCGA TGACGTGCACGT TGC ACC-GCGCGTCA TTTTTCTGCCGGGCC lppL 2397330 - 2398406 + | lipoprotein LppL TERM 1238 2399179 - 2399168 - g 84 -7.2 -4.78753 | opp_overlap 2399175, overlap 2399169 2399170 GCAAGACCAAGAAAA CGCC GGCC GGCG ACGCGGTCAACGACT pyrD 2398720 - 2399793 + | dihydroorotate dehydrogenase 2 TB18.6 2400328 - 2399798 - | hypothetical protein Rv2141c 2401722 - 2400376 - | hypothetical protein TERM 1239 2401202 - 2401166 - G 79 -10.8 -3.92075 | overlap 2401167 ACGGTTAGCGAGAAA CCGCCGACTTCACCGA TTGCC TCGGTGATGCCGTCGA ACAGATCGGGCCTAT Rv2142c 2402510 - 2402193 - | hypothetical protein TERM 1240 2403352 - 2403362 + G 75 -6.8 -4.36914 | opp_overlap 2403351 2403352 ATGCGACCGATGAAT CCAC CAA GTGG TTTTCTCCGGCGGAC Rv2143 2402977 - 2404035 + | hypothetical protein Rv2144c 2404521 - 2404165 - | transmembrane protein wag31 2405398 - 2404616 - | hypothetical protein Rv2146c 2405956 - 2405666 - | transmembrane protein Rv2147c 2406843 - 2406118 - | hypothetical protein Rv2148c 2407616 - 2406840 - | hypothetical protein yfiH 2408374 - 2407622 - | hypothetical protein ftsZ 2409524 - 2408385 - | cell division protein FtsZ TERM 1241 2409665 - 2409687 + r 85 -6.1 -5.10077 | overlap 2409666 GTTGCTAACCGTGCA GGCGCGCCG ATACG CGGCGGGCA TTTTTTCGGCTATTT ftsQ 2410641 - 2409697 - | cell division protein FtsQ TERM 1242 2410646 - 2410669 + r 83 -15.2 -3.17075 | TGTTCCGTCATCCCA GCACCCCCGG ACGG CCGGGGGCGC TTCGGTTGGCCCGGA murC 2412122 - 2410638 - | UDP-N-acetylmuramate--L-alanine ligase murG 2413351 - 2412119 - | N-acetylglucosaminyl transferase TERM 1243 2412969 - 2412954 - G 70 -10.4 -3.66999 | overlap 2412955 2412958 ACGTACCCACCGAAA CCGACG ACGA CGTCGG CGTCGACATCGTCGA TERM 1244 2412983 - 2412958 - G 74 -15.5 -2.66451 | overlap 2412954 2412955 ACCCACCGAAACCGA CGACGACGTCG GCGT CGACATCGTCG AGCACGTCCCGGGCC TERM 1245 2413324 - 2413275 - G 72 -11.4 -3.54029 | opp_overlap 2413285, overlap 2413278 GGCGAGGAACCACAA GAC-GGCGAGGCGGCATCGGCG GGCCGGGG CGCCGTTGCC-CCGCGCCCGCC GGCCGGCTGGCTGAC TERM 1246 2413336 - 2413278 - G 77 -16.7 -2.60161 | gap 3, opp_overlap 2413285, overlap 2413275 GAGGAACCACAAGAC GGCGAGGCGGCATCGGCGGGC-CGGGGC GCCGTT GCCCCGCGCCCGCCG--GCCGGCTGGCT GACCGTGTCCTTCAC ftsW 2414922 - 2413348 - | FtsW-like protein FtsW TERM 1247 2414813 - 2414789 - G 73 -11.3 -3.66999 | AGCCAGGCACCGAAA CGGGTGCGGGG CCT CGCCGAACCCG GGTTAGAGGCTTCTT murD 2416394 - 2414934 - | UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase mraY 2417475 - 2416396 - | phospho-N-acetylmuramoyl-pentapeptide-transferase murF 2419004 - 2417472 - | UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate- D-alanyl-D-alanyl ligase MurF TERM 1248 2418287 - 2418311 + g 74 -9.9 -3.88766 | CGACCGCTCCGGAAT GCGGAACAGCC TGC GGCAGTTCGGC TTTGGTCTGTGCGAT murE 2420608 - 2419001 - | UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase TERM 1249 2419223 - 2419249 + g 72 -13 -3.14463 | GGCCGCCCCAGCCAG GATTTCGCGGCG GAT CGCCGTGGGATC TTCGTCACGCGGGTT Rv2159c 2421665 - 2420631 - | hypothetical protein Rv2160A 2422278 - 2421643 - | hypothetical protein Rv2160c 2422003 - 2421662 - | hypothetical protein TERM 1250 2422225 - 2422250 + gr 71 -11.1 -3.53091 | gap 1, overlap 2422246 CGAGGCGATATCCAT CGCGGCGCGCAG GAT CTGCGC-CCGGG TTTGGCGGCCGACGT Rv2161c 2423137 - 2422271 - | hypothetical protein PE_PGRS38 2424838 - 2423240 - | PE-PGRS family protein TERM 1251 2424007 - 2424029 + g 86 -16.2 -3.55444 | CGTTGCCGATCAGCC CGGCGGCGCC GCC GGCACCGCCG TTTCCGCCGTGCACC TERM 1252 2425046 - 2425018 - R 79 -13.8 -3.53031 | gap 1, overlap 2425014 2425019 TGGAGCCGAAACGAA CCGGCGCGCGCCG TTAC CGGCGC-CGCCGC CCTAGGTGGCCTGCA TERM 1253 2425045 - 2425019 - R 84 -17.3 -2.71497 | gap 1, overlap 2425018 2425014 GGAGCCGAAACGAAC CGGCGCGCGCCG TTAC CGGCGC-CGCCG CCCTAGGTGGCCTGC pbpB 2427087 - 2425048 - | penicillin-binding membrane protein pbpB TERM 1254 2425473 - 2425498 + g 78 -14.7 -3.22298 | GCGGTTCTTCGGTTC GGCTGCCGTCG GGTG CGACGGTGGCC TTGATAATGCGTGGG Rv2164c 2428238 - 2427084 - | hypothetical protein TERM 1255 2427215 - 2427272 + g 78 -15.5 -3.09018 | gap 1, overlap 2427215 CGGGCGTCGCAGCCA CCGGTGCTGGTCCAGG-GAGCCCGGC CGGGGGC GCCGCACCCACCTGGAGCGGCACCGG ATTTTCCGCTGGTGC TERM 1256 2427215 - 2427273 + g 75 -9.5 -4.15565 | gap 2, overlap 2427215 CGGGCGTCGCAGCCA -CCGGTGCTGGTCCAGG-GAGCCCGGC CGGGGGC GCCGCACCCACCTGGAGCGGCACCGGA TTTTCCGCTGGTGCC TERM 1257 2428165 - 2428210 + g 89 -11.2 -4.19817 | gap 1 GTCGTTCGCCTCGTC GCCGCGGCAG-GACTGTCG GCTCTCCTG CGACGATCGCTGCTGCGGC TTTTCGGTGCCTCAC mraW 2429269 - 2428235 - | S-adenosyl-methyltransferase MraW Rv2166c 2429858 - 2429427 - | cell division protein MraZ Rv2167c 2431199 - 2430159 - | transposase Rv2168c 2431420 - 2431094 - | transposase TERM 1258 2431544 - 2431520 - R 100 -14.9 -5.27938 | opp_overlap 2431529 ACGCCCAAACAAAAA GCGGGACCGCC GAT GGCTGCCCCGC TGCCGCTGGTTGCGT Rv2169c 2431969 - 2431565 - | transmembrane protein Rv2170 2432235 - 2432855 + | hypothetical protein lppM 2432951 - 2433634 + | lipoprotein lppM Rv2172c 2434536 - 2433631 - | hypothetical protein idsA2 2434847 - 2435905 + | geranylgeranyl pyrophosphate synthetase Rv2174 2435909 - 2437459 + | integral membrane protein Rv2175c 2437886 - 2437446 - | putative regulatory protein pknL 2437941 - 2439140 + | transmembrane serine/threonine-protein kinase L TERM 1259 2439189 - 2439162 - T 100 -15 -4.12188 | gap 1, opp_overlap 2439155 CGAGCAGTCGCAAAA GCCCCCA-TTTCG GCA CGAAAATGGGGGC TGGTACGTGAATTAA Rv2177c 2439947 - 2439282 - | transposase TERM 1260 2439456 - 2439468 + g 73 -9.1 -3.9461 | CAGCTTGTGGGCGAC GGCGA TGA TCGCC TTCTTGTTGGCAGCG TERM 1261 2440280 - 2440308 + r 79 -9.6 -4.18506 | gap 1 CCGATTCTCATTCAC CATGAGCGGGCGC ACCA GCGCCCA-TCATG TTCTTTTACGACTGC aroG 2441720 - 2440332 - | 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase AroG TERM 1262 2440579 - 2440543 - G 86 -5.9 -5.03314 | gap 1, opp_overlap 2440543, overlap 2440576 TGCACCTCGAAAAAA CCCTGCACTTC-ATCG ACAATG CGATCGAAGTGACGGG TCTTGAACCCCGTGG TERM 1263 2441813 - 2441835 + r 81 -16.2 -2.69468 | overlap 2441810 ACTGTCCGTCTCCTC AGCGGGCCGC GCC GCGGCCCGCA TCGTCTGTGGACGTG Rv2179c 2442317 - 2441811 - | hypothetical protein Rv2180c 2443214 - 2442327 - | integral membrane protein TERM 1264 2443194 - 2443149 - G 81 -16.1 -3.21194 | overlap 2443161 GACAAAGGCGACCAA GCAGCACAACAACGGCAGCCG GCCA CGGTCGACGATGTCGTGCTGC AGCCAGTGGAACACC Rv2181 2443302 - 2444585 + | integral membrane protein Rv2182c 2445329 - 2444586 - | 1-acylglycerol-3-phosphate O-acyltransferase Rv2183c 2445810 - 2445415 - | hypothetical protein TERM 1265 2445506 - 2445534 + g 83 -15.9 -3.53224 | GACGCACCGGTCTGG CCGCCGCCCGGCG GGC CTTCGGGTGGCGG TTTCGCCGACCGGTC Rv2184c 2446946 - 2445807 - | hypothetical protein TB16.3 2447500 - 2447066 - | hypothetical protein TERM 1266 2447632 - 2447622 - R 71 -8.2 -3.9009 | overlap 2447613 AAGTTACCGGAGAAA CCCC GAT GGGG CGTGACCGTTCTAGC Rv2186c 2447994 - 2447605 - | hypothetical protein TERM 1267 2447655 - 2447669 + g 90 -4.2 -5.40072 | GTTCTAGCACTGTCT TGACCT CGA AGGCCA TTTTTTTGCCCGCGA TERM 1268 2449201 - 2449237 + G 71 -12.2 -3.24425 | gap 1, overlap 2449183 2449194 GGTGGCAACTGCCGC GCCGCCGTCTCCGGCGG CGCG CCGCTGGGTGCG-CGGC TTGGTCACTTCTATC fadD15 2448160 - 2449962 + | long-chain-fatty-acid-CoA ligase fadD15 (fatty-acid-CoA synthetase) (fatty-acid-CoA synthase) Rv2188c 2451150 - 2449993 - | hypothetical protein TERM 1269 2450763 - 2450714 - G 73 -10.8 -3.72893 | gap 3 TAGCTGCTGACGAAA GTCACCACG-TCGGTGCCGTCGCCG ATG CGGCGT-AGCACCGATCG-AGCGAC CGGAAGCATCGACCA TERM 1270 2450834 - 2450811 - G 77 -16 -3.01712 | GCGTGCTGGCCAACA CCCGGCTAGC TCCA GCCAGCCGGG CACGCGGGGCCAGCA TERM 1271 2451171 - 2451138 - G 73 -13.9 -3.1552 | gap 1, overlap 2451136 CGTTAGTTACCAACA GGACCCGGCTCACCTG GGT CAGGCTAGC-GGGTCC ACCTTGCGTGAGCAG Rv2189c 2452020 - 2451247 - | hypothetical protein Rv2190c 2453272 - 2452115 - | hypothetical protein TERM 1272 2453043 - 2453060 + g 75 -6.9 -4.42238 | overlap 2453037 AGCTTCTGGTCGGCG GCCCGCT GGGC AGCGAGC TTTTCGTTGAGATCC trpD 2456743 - 2455631 - | anthranilate phosphoribosyltransferase Rv2191 2453819 - 2455756 + | hypothetical protein ctaE 2456901 - 2457512 + | cytochrome C oxidase subunit III qcrC 2457553 - 2458395 + | ubiquinol-cytochrome C reductase QcrC(cytochrome C subunit) qcrA 2458392 - 2459681 + | Rieske iron-sulfur protein QcrA TERM 1273 2459860 - 2459878 + G 73 -3.8 -4.67353 | overlap 2459851 GGTCCTGCTGATCAC CGGCGT GTATTTG ACGCTG TTTTTCGATCCGTCC qcrB 2459678 - 2461327 + | ubiquinol-cytochrome C reductase QcrB (cytochrome B subunit) TERM 1274 2461428 - 2461384 - T 91 -19.1 -2.99596 | overlap 2461366 2461379 2461423 GGCAAATCAAGCACA GCCCGGCGACGACCCGGGTCG GCA CGACCCGGGAAGGAACCGGGC AAATCAAGCACAGCC TERM 1275 2461485 - 2461441 - T 91 -19.1 -2.99596 | overlap 2461423 2461436 2461480 GGCAAATCAAGCACA GCCCGGCGACGACCCGGGTCG GCA CGACCCGGGAAGGAACCGGGC AAATCAAGCACAGCC Rv2197c 2462148 - 2461504 - | transmembrane protein mmpS3 2463047 - 2462148 - | membrane protein TERM 1276 2462442 - 2462488 + g 93 -18.6 -3.30124 | overlap 2462440 2462442 2462445 CGTGGTGGTCGTGGG CGGCGGTGCCGCCGCCGTTG TGGTGGT CGCCGGCGGCGGCGCCGTGG TTGTCGCCGGTGGGG TERM 1277 2462442 - 2462458 + g 70 -11.5 -3.44051 | overlap 2462440 2462442 2462445 CGTGGTGGTCGTGGG CGGCGGT GCC GCCGCCG TTGTGGTGGTCGCCG TERM 1278 2462445 - 2462485 + g 100 -21.1 -2.8294 | overlap 2462440 2462442 2462442 GGTGGTCGTGGGCGG CGGTGCCGCCGCCGTTG TGGTGGT CGCCGGCGGCGGCGCCG TGGTTGTCGCCGGTG Rv2199c 2463652 - 2463233 - | integral membrane protein ctaC 2464751 - 2463660 - | transmembrane cytochrome C oxidase subunit II CtaC TERM 1279 2465819 - 2465842 + G 93 -16 -4.03413 | opp_overlap 2465817 GTGGCCAAGCATATG CGCGCCGATG TCAC CGTCGGCGCG TTTCTGTCCGGGGGT TERM 1280 2466833 - 2466874 + G 77 -10.1 -4.0162 | gap 1, overlap 2466834 2466835 2466837 GACGAGCACCGGTGC GG-CAGCAGCGACCACAGCC GCC GGCTGTGGACCATGCTGATC TTTATGCTGTGGCAC TERM 1281 2466834 - 2466872 + G 72 -11.6 -3.60104 | overlap 2466833 2466835 2466837 ACGAGCACCGGTGCG GCAGCAGCGACCACAGCC GCC GGCTGTGGACCATGCTGA TCTTTATGCTGTGGC TERM 1282 2466835 - 2466871 + G 72 -15.1 -2.7558 | overlap 2466834 2466833 2466837 CGAGCACCGGTGCGG CAGCAGCGACCACAGCC GCC GGCTGTGGACCATGCTG ATCTTTATGCTGTGG asnB 2464997 - 2466955 + | asparagine synthetase AsnB TERM 1283 2466975 - 2467016 + T 100 -21.7 -2.78816 | gap 1, opp_overlap 2466975 CCCTTCGCGAGCAGA CGCGGAATCGCATCG-GCGG GGC CCACACGGTGCGATTCCGCG TCTGCTCGGCGGTGC TERM 1284 2467016 - 2466975 - T 100 -21.7 -2.78384 | gap 1, opp_overlap 2466975 CCCTTCGCGAGCAGA CGCGGAATCGCATCG-GCGG GGC CCACACGGTGCGATTCCGCG TCTGCTCGGCGGTGC cbhK 2468027 - 2467053 - | carbohydrate kinase CbhK TERM 1285 2467741 - 2467725 - G 73 -10.8 -3.70902 | GGTGGTACAGGTAAA CCGCGC CGTGT GCGCGG TCTCGGAGATCAGAA Rv2203 2468231 - 2468923 + | hypothetical protein Rv2204c 2469287 - 2468931 - | hypothetical protein Rv2205c 2470463 - 2469387 - | hypothetical protein TERM 1286 2470774 - 2470758 - g 73 -15.1 -2.90496 | overlap 2470755 GCGGGTCGCAAACCA CCGGCCC CAA GGGCCGG CCCACGCCCAAGCGC Rv2206 2470622 - 2471332 + | transmembrane protein TERM 1287 2472387 - 2472404 + G 71 -14.1 -2.80816 | CGTTGATGGTGTTGC GCGCCGC GGTC GCGGCGC TGTCGTCGATGGCGA cobT 2471411 - 2472496 + | nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase cobS 2472493 - 2473242 + | cobalamin synthase ilvE 2475970 - 2474864 - | branched-chain amino acid aminotransferase Rv2209 2473400 - 2474938 + | integral membrane protein TERM 1288 2475059 - 2475070 + gT 76 -7.2 -4.31433 | overlap 2475058 2475057 CACCTCGGTGATCTC GCCG GCGG CGGC TTTCTTCTGCCACTC gcvT 2477181 - 2476042 - | glycine cleavage system aminomethyltransferase T TERM 1289 2476299 - 2476311 + g 74 -10.5 -3.85698 | opp_overlap 2476262 CCCGCAGCAGCCGCC GCGGC CCG GCCGC TTTCTCGGCCAACAA Rv2212 2477190 - 2478326 + | hypothetical protein TERM 1290 2479162 - 2479147 - g 70 -6.1 -4.16921 | opp_overlap 2479147, overlap 2479148 CAAGAACCCCCAAAA GGCCA AGAAGG TGGCC TTGGTTGGCAAGGGG TERM 1291 2479832 - 2479789 - g 78 -14.6 -3.28712 | gap 1 CGGCCCGGCCTACAA CACCGGCAGCGCC-TGGGG TTACACG CCCAAGGGCGCCACCGGTG TGCCCACCCGCACCA pepB 2478338 - 2479885 + | leucyl aminopeptidase ephD 2481701 - 2479923 - | short chain dehydrogenase TERM 1292 2480709 - 2480673 - G 81 -12.2 -3.78953 | gap 1 ACCCTCACGAGCAAA GGCGAGC-GCGGTCTCG CGGC CGATTCCGCTGCCCGCC CCGGTAACCGACACC TERM 1293 2482868 - 2482816 - g 74 -7.5 -4.25256 | gap 2, overlap 2482813 2482826 2482829 GGCTGAGCAAAAGAA GCGGGCGAAAGCACCGGCGCCGGCC GCCCA GGCCGCCGCC-GCGCCGGC-CCCGA AAGCGCCGCCTGCCC TERM 1294 2482859 - 2482826 - g 78 -13.8 -3.56366 | gap 1, overlap 2482813 2482816 2482829 AAGAAGCGGGCGAAA GCACCGGCGCCGGCC GCCCA GGCCGCCGCC-GCGC CGGCCCCGAAAGCGC dlaT 2481965 - 2483626 + | dihydrolipoamide acetyltransferase TERM 1295 2484378 - 2484396 + G 71 -9.5 -3.794 | overlap 2484373 GCTGATGTTGCCTAG CGTCGCG GTACG CGCGGCG TTTGGTGAGTTCGCC Rv2216 2483626 - 2484531 + | hypothetical protein lipB 2484584 - 2485276 + | lipoyltransferase lipA 2485273 - 2486208 + | lipoyl synthase TERM 1296 2486742 - 2486732 - g 88 -8.2 -4.91109 | overlap 2486733 GGCTCAGGAGAAAAA GCGC ACC GCGC GACTGGTCGGGGACG Rv2219 2486235 - 2486987 + | transmembrane protein Rv2219A 2487416 - 2486994 - | hypothetical protein TERM 1297 2487641 - 2487626 - g 72 -6.8 -4.18018 | TTCTGTGACGGAAAA GACGCC CGAC GACGTC TTCAAACTTGCCAAG glnA1 2487615 - 2489051 + | glutamine synthetase GLNA1 (glutamine synthase) (GS-I) TERM 1298 2489206 - 2489250 + T 73 -10.7 -3.59979 | opp_overlap 2489211, overlap 2489208 2489211 GTTTCAGCCGGGTGC CACAACCCGCTTGGCAATC ATCTCCC GACCGCCGAGCGGGTTGTC TTTCACATGCGCCGA TERM 1299 2489208 - 2489248 + T 74 -13.3 -3.38046 | opp_overlap 2489211, overlap 2489206 2489211 TTCAGCCGGGTGCCA CAACCCGCTTGGCAATC ATCTCCC GACCGCCGAGCGGGTTG TCTTTCACATGCGCC TERM 1300 2489211 - 2489245 + T 74 -9.2 -3.82946 | opp_overlap 2489211, overlap 2489208 2489206 AGCCGGGTGCCACAA CCCGCTTGGCAATC ATCTCCC GACCGCCGAGCGGG TTGTCTTTCACATGC TERM 1301 2489245 - 2489211 - T 72 -12.1 -3.28791 | opp_overlap 2489211 2489208 2489206 AGCCGGGTGCCACAA CCCGCTTGGCAATCA TCTCC CGACCGCCGAGCGGG TTGTCTTTCACATGC glnE 2492353 - 2489369 - | glutamate-ammonia-ligase adenylyltransferase GLNE (glutamine-synthetase adenylyltransferase) TERM 1302 2491592 - 2491580 - G 78 -6.2 -4.59773 | GTCCACCTCGAAAAA GGCC GCCGA GGCC ACCCGCATCATCTCG glnA2 2493742 - 2492402 - | glutamine synthetase TERM 1303 2492547 - 2492497 - G 82 -4.5 -4.93595 | overlap 2492498 AGAAAAAGTCAAAAA CGTGCTCCCCCAAGGCCTCCG CGACGAGTT CGGAGGCCTCCATGGCGCGCA GCGCACTATCCAAAC Rv2223c 2495399 - 2493837 - | exported protease Rv2224c 2497023 - 2495461 - | exported protease panB 2497742 - 2498587 + | 3-methyl-2-oxobutanoate hydroxymethyltransferase Rv2226 2498832 - 2500373 + | hypothetical protein TERM 1304 2500540 - 2500560 + F 88 -14.7 -3.69338 | overlap 2500535 2500534 2500557 CTCAAGCGCCTGCGC GGCCGCACT TTC GGTGCGGCC TTCTTGGCCTTGCTT Rv2227 2500931 - 2501632 + | hypothetical protein Rv2228c 2502738 - 2501644 - | bifunctional RNase H/acid phosphatase Rv2229c 2503472 - 2502735 - | hypothetical protein Rv2230c 2504608 - 2503469 - | hypothetical protein cobC 2505699 - 2504605 - | hypothetical protein Rv2232 2506278 - 2507153 + | hypothetical protein ptpA 2507146 - 2507637 + | phosphotyrosine protein phosphatase PTPA (protein-tyrosine-phosphatase) (PTPase) (LMW phosphatase) Rv2235 2507637 - 2508452 + | transmembrane protein cobD 2509375 - 2508434 - | cobalamin biosynthesis protein Rv2237 2509489 - 2510256 + | hypothetical protein ahpE 2511176 - 2510715 - | peroxiredoxin AhpE Rv2239c 2511652 - 2511176 - | hypothetical protein Rv2240c 2512487 - 2511690 - | hypothetical protein aceE 2512539 - 2515244 + | pyruvate dehydrogenase subunit E1 Rv2242 2515304 - 2516548 + | hypothetical protein fabD 2516787 - 2517695 + | acyl-carrier-protein S-malonyltransferase acpP 2517771 - 2518118 + | acyl carrier protein TERM 1305 2518589 - 2518626 + G 72 -13.3 -3.15544 | overlap 2518591 ATCGGTCTGCAGCTT GGGGCCCGCGCCGGGGT GATG ACCCCGGTGTCGGCCTG TTCGTCGGGCTCGGA TERM 1306 2518591 - 2518624 + G 86 -18.1 -3.14051 | overlap 2518589 CGGTCTGCAGCTTGG GGCCCGCGCCGGGGT GATG ACCCCGGTGTCGGCC TGTTCGTCGGGCTCG kasA 2518115 - 2519365 + | 3-oxoacyl-(acyl carrier protein) synthase II kasB 2519396 - 2520712 + | 3-oxoacyl-(acyl carrier protein) synthase II accD6 2520743 - 2522164 + | acetyl/propionyl-CoA carboxylase beta subunit AccD6 TERM 1307 2522223 - 2522182 - f 100 -26.1 -2.79183 | gap 1, opp_overlap 2522182 2522189, overlap 2522189 CTGACCGCGAGCAGA CGCAGAATCGCACG-CGCGA GGT CCGCGCCGTGCGATTCTGCG TCTGCTCGCCAGTTA TERM 1308 2522182 - 2522223 + F 100 -25.4 -2.79133 | gap 1, opp_overlap 2522182 2522189, overlap 2522189 CTGACCGCGAGCAGA CGCAGAATCGCACG-CGCG AGGTC CGCGCCGTGCGATTCTGCG TCTGCTCGCCAGTTA TERM 1309 2522216 - 2522189 - f 83 -14.2 -3.40299 | gap 1, opp_overlap 2522189 2522182, overlap 2522182 CGAGCAGACGCAGAA TCGCACG-CGCGA GGT CCGCGCCGTGCGA TTCTGCGTCTGCTCG TERM 1310 2522189 - 2522216 + F 79 -13.5 -3.40299 | gap 1, opp_overlap 2522182 2522189, overlap 2522182 CGAGCAGACGCAGAA TCGCACG-CGCG AGGTC CGCGCCGTGCGA TTCTGCGTCTGCTCG Rv2248 2522360 - 2523175 + | hypothetical protein TERM 1311 2523191 - 2523229 + T 100 -29.1 -2.79183 | opp_overlap 2523191 CCGCTGGTGAGCAGA CGCAGAGTCGCACTGCG GCCGG CGCAGTGCGACTCTGCG TCTGCTCGCGCTCAA TERM 1312 2523229 - 2523191 - T 100 -29.1 -2.78384 | opp_overlap 2523191 CCGCTGGTGAGCAGA CGCAGAGTCGCACTGCG GCCGG CGCAGTGCGACTCTGCG TCTGCTCGCGCTCAA glpD1 2524791 - 2523241 - | glycerol-3-phosphate dehydrogenase TERM 1313 2523695 - 2523681 - G 70 -2.1 -4.66163 | gap 1, overlap 2523683 ACGGCGATTCAAAAA CAGCGT GGTC ACGC-G AAACGTCGGCGGTGC Rv2250c 2525354 - 2524785 - | transcriptional regulator TERM 1314 2525582 - 2525563 - gH 71 -13.6 -2.62184 | GTCGGGGGCAGACCA CGATGCGC TGGC GCGCATCG TCGGCACCGAGTATT Rv2250A 2525402 - 2525821 + | flavoprotein Rv2251 2525565 - 2526992 + | flavoprotein Rv2252 2526989 - 2527918 + | diacylglycerol kinase TERM 1315 2528256 - 2528244 - g 83 -2.6 -5.14563 | TCCGCCACCAAAAAA CGAG TTCAT CCCG CGGCCAATCGAATAC Rv2253 2527984 - 2528487 + | hypothetical protein Rv2254c 2528975 - 2528520 - | integral membrane protein TERM 1316 2528806 - 2528816 + g 84 -6.8 -4.82901 | opp_overlap 2528804 2528806 AACGCAAACCGAACA CAGC CCA GCTG TTTTTGTGGGGCCGG Rv2255c 2529174 - 2528980 - | hypothetical protein Rv2256c 2529874 - 2529341 - | hypothetical protein Rv2257c 2530822 - 2530004 - | hypothetical protein Rv2258c 2531897 - 2530836 - | transcriptional regulator adhE2 2532245 - 2533330 + | zinc-dependent alcohol dehydrogenase AdhE2 Rv2260 2533330 - 2533965 + | hypothetical protein Rv2261c 2534464 - 2534042 - | hypothetical protein Rv2262c 2535552 - 2534470 - | hypothetical protein Rv2263 2535641 - 2536594 + | short chain dehydrogenase Rv2264c 2538350 - 2536572 - | hypothetical protein TERM 1317 2538225 - 2538260 + g 79 -13.2 -3.727 | CGATGGCACACCGAC CTCGGGCGGGCGCTGT CGAT ACAGCGTCAGCACGGG TTTACGTGTGATGGA Rv2265 2538700 - 2539929 + | integral membrane protein cyp124 2540104 - 2541390 + | cytochrome P450 124 CYP124 TERM 1318 2541488 - 2541515 + T 79 -9 -4.18197 | overlap 2541490 CCACCCACTGGCGGA CCGGTAGGCACC GATC GGTGCCGGCCTG TTTTGGGTAGCGGAT TERM 1319 2541490 - 2541513 + T 74 -10.2 -3.69216 | overlap 2541488 ACCCACTGGCGGACC GGTAGGCACC GATC GGTGCCGGCC TGTTTTGGGTAGCGG TERM 1320 2541652 - 2541634 - T 78 -11.7 -3.70902 | CGGTCGAGAGCCAAA GGCGGCT TGATC AGCCGCC AACCGCAGGCCGAAG Rv2267c 2542810 - 2541644 - | hypothetical protein cyp128 2544276 - 2542807 - | cytochrome P450 128 Rv2269c 2544621 - 2544289 - | hypothetical protein lppN 2544698 - 2545225 + | lipoprotein lppN TERM 1321 2545207 - 2545237 + F 91 -16.8 -3.65522 | overlap 2545234 CGGTCAGTTGCTCAC CGGGTCGGCCCGTC GCT GACCGGACGACCCG TTGTTCGGGTGCGTG Rv2271 2545332 - 2545631 + | hypothetical protein TERM 1322 2545773 - 2545754 - g 70 -10 -3.68351 | GGCTGATGACTCAAA CGACACCG CGAC CGATGTCG AACCCGACTACCGGT Rv2272 2545737 - 2546105 + | transmembrane protein Rv2273 2546102 - 2546431 + | transmembrane protein TERM 1323 2546488 - 2546443 - T 100 -27.1 -3.02144 | gap 1, opp_overlap 2546445 2546452, overlap 2546445 2546452 CTAGCGCGGCGAACA GACGCAAAAGCCCCCG-CACGC ACG GAGTGTCGGGGGCTTTTGCGTC TACTCGCCAAATGCG TERM 1324 2546445 - 2546486 + T 100 -23.9 -2.78596 | gap 1, opp_overlap 2546443 2546445 2546452, overlap 2546452 AGCGCGGCGAACAGA CGCAAAAGCCCCCG-CACGC ACG GAGTGTCGGGGGCTTTTGCG TCTACTCGCCAAATG TERM 1325 2546486 - 2546445 - T 100 -23.9 -3.06815 | gap 1, opp_overlap 2546445 2546452, overlap 2546443 2546452 AGCGCGGCGAACAGA CGCAAAAGCCCCCG-CACGC ACG GAGTGTCGGGGGCTTTTGCG TCTACTCGCCAAATG TERM 1326 2546452 - 2546479 + T 100 -13.4 -4.24948 | gap 1, opp_overlap 2546445 2546443 2546452, overlap 2546445 CGAACAGACGCAAAA GCCCCCG-CACGC ACG GAGTGTCGGGGGC TTTTGCGTCTACTCG TERM 1327 2546479 - 2546452 - T 100 -13.4 -4.28375 | gap 1, opp_overlap 2546452 2546445, overlap 2546445 2546443 CGAACAGACGCAAAA GCCCCCG-CACGC ACG GAGTGTCGGGGGC TTTTGCGTCTACTCG Rv2274c 2546805 - 2546488 - | hypothetical protein Rv2275 2546883 - 2547752 + | hypothetical protein cyp121 2547749 - 2548939 + | cytochrome P450 121 CYP121 TERM 1328 2549064 - 2549046 - T 72 -2.3 -4.67982 | overlap 2549049 TTCTACCGAATAAAA GTACGGG CCTCC CCCAAAC TCCGAAATCGTCAGT Rv2277c 2550029 - 2549124 - | glycerolphosphodiesterase TERM 1329 2549922 - 2549905 - G 83 -12.7 -4.07568 | overlap 2549888 GTGTTCTCGGGAAAA TCGCGCG TACC CGCGCGA TGCGCGACAATCATC Rv2278 2550065 - 2550391 + | transposase Rv2279 2550388 - 2551326 + | transposase Rv2280 2551560 - 2552939 + | dehydrogenase TERM 1330 2552984 - 2552966 - f 70 -11.6 -3.14211 | overlap 2552952 2552950 AGCCGGCCGGACCAA GGCCGGTC ATC GGCCGGCC AACAGGCCTGCAAGT TERM 1331 2553956 - 2553932 - g 72 -5 -4.4388 | gap 2, overlap 2553934 ACAGAAATTAAGAAA GAGCGCATCGCA CAC CGCGA-GCGC-C ACAAGGCGGCGTTCG TERM 1332 2554278 - 2554291 + G 70 -2.3 -4.64861 | overlap 2554279 TGGTCGGTGCAGCGG TGTGG ATGG CCACC TTTATTTTCGCCAAG pitB 2553173 - 2554831 + | phosphate ABC transporter permease TERM 1333 2554809 - 2554823 + T 89 -11.4 -4.36914 | CCTCGGTCGGTCTTG TCGCGC TAC GCGCGA TTTTCTGACGACGCC TERM 1334 2554909 - 2554882 - T 100 -19.2 -3.56092 | gap 1, opp_overlap 2554882 CGAGCAGTCGCTAAA GCCCCCGACACGC CGT GCGTG-CGGGGGC TTATGCGACTGCTCG TERM 1335 2554882 - 2554909 + T 93 -19.2 -3.31792 | gap 1, opp_overlap 2554882 CGAGCAGTCGCTAAA GCCCCCGACACGC CGT GCGTG-CGGGGGC TTATGCGACTGCTCG Rv2282c 2555876 - 2554938 - | LysR family transcriptional regulator Rv2283 2555941 - 2556135 + | hypothetical protein lipM 2556145 - 2557440 + | esterase LipM Rv2285 2557473 - 2558810 + | hypothetical protein Rv2286c 2559569 - 2558877 - | hypothetical protein TERM 1336 2560962 - 2560928 - g 73 -15.7 -2.52464 | TGCTGGTCCAAGGGA CTTCCTTGCCCACCG TCGTT CGGTGGGCGAGGATG CCCGAAGACGTCGCG yjcE 2559703 - 2561331 + | integral membrane transport protein YjcE Rv2288 2561328 - 2561705 + | hypothetical protein cdh 2561675 - 2562457 + | CDP-diacylglycerol pyrophosphatase lppO 2562599 - 2563114 + | lipoprotein lppO sseB 2563174 - 2564028 + | thiosulfate sulfurtransferase SseB Rv2292c 2564253 - 2564029 - | hypothetical protein Rv2293c 2565032 - 2564292 - | hypothetical protein Rv2294 2565327 - 2566550 + | aminotransferase TERM 1337 2566658 - 2566634 - f 75 -13.6 -3.05816 | gap 1, opp_overlap 2566634 TCAGTGCCCAGCCAA TGCGGCCGACC CCGC GG-CGGCCGCA TTCGGTAGACAAAGG TERM 1338 2566634 - 2566658 + F 75 -13.6 -3.05384 | gap 1, opp_overlap 2566634 TCAGTGCCCAGCCAA TGCGGCCGACC CCGC GG-CGGCCGCA TTCGGTAGACAAAGG Rv2295 2566772 - 2567410 + | hypothetical protein Rv2296 2567504 - 2568406 + | haloalkane dehalogenase Rv2297 2568438 - 2568890 + | hypothetical protein TERM 1339 2569981 - 2569997 + G 81 -15.1 -3.53091 | overlap 2569975 2569990 GCTCACCGACGCCGC CCGGGCG TTT CGCCCGG TTTCCACCGGCCGCT Rv2298 2569082 - 2570053 + | hypothetical protein htpG 2572002 - 2570059 - | heat shock protein 90 Rv2300c 2573008 - 2572076 - | hypothetical protein cut2 2573015 - 2573707 + | cutinase CUT2 TERM 1340 2574032 - 2574019 - g 75 -9.5 -4.11216 | overlap 2574020 CGCGGAGGCCGAAAA GCGCG CTGC CGCGC GGGCCGGGCACGCGG Rv2302 2573813 - 2574055 + | hypothetical protein Rv2303c 2575019 - 2574096 - | antibiotic-resistance protein Rv2304c 2575225 - 2575016 - | hypothetical protein TERM 1341 2576378 - 2576364 - g 75 -9.2 -4.07568 | CGCGGCCTGGCAAAA CCGGCC ATC GACCGG AAGCGGACCACCCGG Rv2305 2575809 - 2577098 + | hypothetical protein Rv2306A 2577108 - 2577701 + | hypothetical protein Rv2307c 2578696 - 2577851 - | hypothetical protein Rv2306B 2577488 - 2577922 + | hypothetical protein TERM 1342 2578739 - 2578727 - TR 70 -10.5 -3.6682 | TGCGACGCATCGAAA GCGGG GTC CCCGC GACCAGTGGATTACC TERM 1343 2578967 - 2578939 - TR 79 -11 -3.85817 | gap 1, overlap 2578940 ACCCGTCCCTACAAA TTGCGGTGGCGCC GGGT GGCGCCCCCG-AA CCTGGCGGCACTTGC TERM 1344 2578967 - 2578940 - TR 70 -12.6 -2.91276 | overlap 2578939 CCCGTCCCTACAAAT TGCGGTGGCGCC GGGT GGCGCCCCCGAA CCTGGCGGCACTTGC Rv2307A 2579419 - 2579228 - | glycine rich protein Rv2307B 2579935 - 2579504 - | glycine rich protein Rv2307D 2580210 - 2580028 - | hypothetical protein Rv2308 2580419 - 2581135 + | hypothetical protein Rv2309c 2582298 - 2581843 - | hypothetical protein Rv2309A 2583045 - 2583332 + | hypothetical protein Rv2310 2583435 - 2583779 + | excisionase TERM 1345 2583803 - 2583833 + F 73 -6.9 -4.30911 | opp_overlap 2583785 CTGCATGCTCGACAC GTCGCTGCTG-TGGT CAA GCCGGCAGC-GCGAC TTTCTGTTGTCGTTG Rv2311 2583884 - 2584408 + | hypothetical protein Rv2312 2584486 - 2584755 + | hypothetical protein Rv2313c 2585906 - 2585052 - | hypothetical protein Rv2314c 2587290 - 2585917 - | hypothetical protein TERM 1346 2586018 - 2586065 + g 81 -12 -3.90112 | gap 1, overlap 2586009 CGCGCGGCAGTGTCG GCTCGCTGACACCTGCTTCGGTG GCC CGTCGCAGCAGGTC-CAGTGGGC TTTCGTTAAACCGGA TERM 1347 2586944 - 2586918 - G 85 -13.6 -4.10657 | CGATACCGGTGAAAA CCCCTGCCCCGG TGC CCGGAACCGGGG CATCCCAGTCGTCGG Rv2315c 2588804 - 2587287 - | hypothetical protein TERM 1348 2587368 - 2587338 - G 70 -11.1 -3.61715 | gap 1, opp_overlap 2587361, overlap 2587339 GACGCCCCGGAACAA CGCCGACGGACAGC CATG GCTGACCG-CGGCA ACCTGGCCGGGCTGG TERM 1349 2588885 - 2588912 + G 77 -9.8 -3.99374 | gap 1, overlap 2588895 GGCATATGCCCTGCT GGCGCCCA-GCCT GGT GGGCGTGGTCGCC TTCTTGTTGCTGCCC uspA 2588838 - 2589710 + | sugar-transport integral membrane protein ABC transporter UspA uspB 2589697 - 2590521 + | sugar-transport integral membrane protein ABC transporter UspB uspC 2590518 - 2591840 + | periplasmic sugar-binding lipoprotein UspC Rv2319c 2592726 - 2591848 - | hypothetical protein rocE 2594153 - 2592723 - | cationic amino acid transport integral membrane protein RocE rocD2 2594699 - 2594154 - | ornithine aminotransferase rocD1 2595364 - 2594699 - | ornithine aminotransferase Rv2323c 2596269 - 2595361 - | hypothetical protein Rv2324 2596334 - 2596780 + | AsnC family transcriptional regulator TERM 1350 2596840 - 2596804 - T 81 -8 -4.42788 | gap 1, overlap 2596806 GCCAATGCTAGAAAA GGCCTGCTGA-GCTACG TAGA CGCAGCATGAGCAGGTC CTCGCGCCGCCAACC TERM 1351 2596888 - 2596863 - T 77 -12.5 -3.57561 | opp_overlap 2596856 CGCCAACCCGCGAAA CGGCGCGTCTG TACA CCGACACGCCG TTAGGGCGCGCGCCC Rv2325c 2597857 - 2597009 - | hypothetical protein Rv2326c 2599947 - 2597854 - | transmembrane ATP-binding protein ABC transorter Rv2327 2599988 - 2600479 + | hypothetical protein PE23 2600731 - 2601879 + | PE family protein narK1 2603461 - 2601914 - | nitrite extrusion protein 1 NarK1 TERM 1352 2603115 - 2603100 - G 78 -6.1 -4.58663 | ACGATTGCCGAAAAA GTCGC CCAGTT GCGAC CGCCAAAGATCGCGC TERM 1353 2603681 - 2603670 - R 72 -2.2 -4.71426 | overlap 2603642 CTCGCAGCAAGAAAA CAGC GAAA GCTA TTGTGCTCGAGTACT lppP 2604222 - 2603695 - | lipoprotein LppP Rv2331 2604297 - 2604683 + | hypothetical protein Rv2331A 2604740 - 2605078 + | hypothetical protein TERM 1354 2605626 - 2605668 + G 95 -19.9 -2.93382 | overlap 2605628 CAAATTGGCCCTCTA CACCGC-CGGCGGCGGCGTCG ATC CG-CGCCGCTGCCTCGCGGTG TCTCTGGATGTCGGC TERM 1355 2605628 - 2605666 + G 79 -16.7 -3.01912 | overlap 2605626 AATTGGCCCTCTACA CCGC-CGGCGGCGGCGTCG ATC CG-CGCCGCTGCCTCGCGG TGTCTCTGGATGTCG mez 2605108 - 2606754 + | malate dehydrogenase Rv2333c 2608321 - 2606708 - | integral membrane transport protein TERM 1356 2609383 - 2609423 + G 77 -10.3 -3.96148 | gap 1, opp_overlap 2609368 2609377 GGAACGCAAGCCGTC GGCCCGGT-TCGTGGCCG TAGAGC CGGCCGCGTCGCCGGTCC TTTCTGGTGGCCAGA cysK1 2608796 - 2609728 + | cysteine synthase A CysK1 cysE 2609732 - 2610421 + | serine acetyltransferase CysE Rv2336 2610837 - 2611805 + | hypothetical protein Rv2337c 2612987 - 2611869 - | hypothetical protein moeW 2614063 - 2613107 - | hypothetical protein TERM 1357 2615443 - 2615456 + G 72 -4.5 -4.48072 | GGATACCACGGAATG GTCGG CCTT TCGAC TTTTGTGGTCAATAT mmpL9 2614693 - 2617581 + | transmembrane transport protein MmpL9 PE_PGRS39 2618908 - 2617667 - | PE-PGRS family protein TERM 1358 2618405 - 2618386 - G 82 -11.4 -4.05446 | gap 1 CGTGCGAAGCAGAAA CGCCGCTGC CGT GC-GCGGCG CCAGCCACTCCGGGG lppQ 2619597 - 2620016 + | lipoprotein LppQ Rv2342 2620272 - 2620529 + | hypothetical protein dnaG 2622452 - 2620533 - | DNA primase dgt 2623752 - 2622457 - | deoxyguanosinetriphosphate triphosphohydrolase-like protein TERM 1359 2622868 - 2622841 - G 70 -9.8 -3.64703 | CGCGGCCGATGCAAA GCGGCCCACCAG CTCG CTGGTCAACCGC TTGAGCGCGACCGAT Rv2345 2623821 - 2625803 + | transmembrane protein TERM 1360 2625843 - 2625808 - T 100 -28.4 -2.52464 | GGCGGTTCTAAGCCA CGCGCCAGCGCACGGG GATA CCCGTACGCTGGCGCG TGTGGCCGTCGACCT esxO 2626172 - 2625888 - | putative ESAT-6 like protein ESXO (ESAT-6 like protein 6) esxP 2626519 - 2626223 - | putative ESAT-6 like protein ESXP (ESAT-6 like protein 7) Rv2348c 2626980 - 2626654 - | hypothetical protein plcC 2628698 - 2627172 - | phospholipase C 3 PLCC TERM 1361 2628451 - 2628462 + g 73 -3.6 -4.63218 | AGCGCCTGCGTCTCC GGGT TCCA GCCC TTTTGTTGAAACAGC plcB 2630319 - 2628781 - | membrane-associated phospholipase C TERM 1362 2629574 - 2629593 + g 75 -2.8 -4.72007 | TAGCCGACGACGGTG TTGTTGAG AGCC CCCAGCAA TTTGTTTTGGTACAC plcA 2632075 - 2630537 - | membrane-associated phospholipase C PPE38 2634098 - 2632923 - | PPE family protein PPE39 2635592 - 2634528 - | PPE family protein TERM 1363 2635109 - 2635095 - G 71 -2.7 -4.58395 | GCCAGCGTCGAAAAA GCCTG TGTTG CCGGC GCCGGCGTTAGCGAG Rv2354 2635628 - 2635954 + | transposase Rv2355 2635951 - 2636889 + | transposase TERM 1364 2637420 - 2637406 - T 74 -4.9 -4.64334 | AACTCGGGAACAAAA CCGCC GGTCA GGCAG CTGTCGCTGAGAGCC PPE40 2639535 - 2637688 - | PPE family protein TERM 1365 2638754 - 2638778 + g 75 -13.5 -3.38046 | overlap 2638752 TAGTCACCCGTGTTT CCGCTGCCGGC ATT GCCGGTACCGG TGTTTCCGCTGCCCC glyS 2641064 - 2639673 - | glycyl-tRNA synthetase Rv2358 2641246 - 2641653 + | ArsR family transcriptional regulator furB 2641650 - 2642042 + | ferric uptake regulation protein FURB Rv2360c 2642578 - 2642150 - | hypothetical protein Rv2361c 2643468 - 2642578 - | long (C50) chain Z-isoprenyl diphosphate synthase (Z-decaprenyl diphosphate synthase) recO 2644258 - 2643461 - | DNA repair protein RecO amiA2 2644320 - 2645774 + | amidase era 2646673 - 2645771 - | GTP-binding protein Era Rv2365c 2647088 - 2646747 - | hypothetical protein Rv2366c 2648367 - 2647060 - | transmembrane protein TERM 1366 2647579 - 2647614 + gr 70 -9.8 -3.59979 | gap 1, overlap 2647560 2647581 2647583 GGTCGTTTCGCGGCC GCCGTTCGTCGAGCAGA ACG TCTGCTCGAC-AAGGTC TTTCAGGTACACCAC Rv2367c 2648912 - 2648364 - | putative metalloprotease phoH1 2649974 - 2648916 - | phosphate starvation-inducible protein PsiH TERM 1367 2649824 - 2649849 + gr 71 -6.1 -4.25104 | overlap 2649782 CGTGCAGGTCGGCAC TCAGCGTGC GTTCGAGG GCACGCAGA TTTTCGTCGGCCGAA Rv2369c 2650248 - 2649946 - | hypothetical protein Rv2370c 2651558 - 2650245 - | hypothetical protein TERM 1368 2651218 - 2651232 + g 77 -7.8 -4.36914 | GCGATTTCGGTCCAT CGTTGC CAG GCGACG TTTTGTCCGACGCGG PE_PGRS40 2651753 - 2651938 + | PE-PGRS family protein Rv2372c 2652825 - 2652037 - | hypothetical protein dnaJ2 2653987 - 2652839 - | chaperone protein DnaJ2 TERM 1369 2653902 - 2653924 + g 71 -9 -3.83502 | TCGGGATGCAGCTCG CGCGCCAGCT TGC GGTAGGCGCG TTTGATGTCCGCGTC hrcA 2655093 - 2654062 - | heat-inducible transcription repressor TERM 1370 2654180 - 2654156 - G 77 -16.5 -2.78384 | GTGGGGCCCACCACA CCCATACCGCC GTA GACGGTATGGG CGGTACCGTAGGCCG Rv2375 2655265 - 2655582 + | hypothetical protein cfp2 2656115 - 2655609 - | low molecular weight antigen CFP2 (low molecular weight protein antigen 2) (CFP-2) TERM 1371 2655763 - 2655731 - G 70 -10.3 -3.71378 | opp_overlap 2655729 2655731, overlap 2655710 2655732 GACCCGAGACGGAAA CGTCGGCGGTGGCCG AAC CGGCGGCCGCCGGCT GGATGTTCGTCACGC TERM 1372 2655762 - 2655732 - G 71 -13.8 -2.82505 | opp_overlap 2655729 2655731, overlap 2655710 2655731 ACCCGAGACGGAAAC GTCGGCGGTGGCCG AAC CGGCGGCCGCCGGC TGGATGTTCGTCACG mbtH 2656430 - 2656215 - | putative protein MbtH mbtG 2657703 - 2656408 - | lysine-N-oxygenase MBTG (L-lysine 6-monooxygenase) (lysine N6-hydroxylase) mbtF 2662085 - 2657700 - | peptide synthetase MBTF (peptide synthase) mbtE 2667115 - 2662067 - | peptide synthetase MBTE (peptide synthase) mbtD 2670269 - 2667255 - | polyketide synthetase MBTD (polyketide synthase) mbtC 2671603 - 2670269 - | polyketide synthetase MBTC (polyketide synthase) TERM 1373 2670701 - 2670741 + g 72 -11.8 -3.57144 | gap 1, opp_overlap 2670706 CCCGACATCGGCGGG CACAACTGCTGCCTGCGCG ATGG CGCGCCGG-AGCAGTCGCG TTTGCGCGTCGCCGC TERM 1374 2670736 - 2670706 - G 73 -13.3 -3.28924 | gap 1, opp_overlap 2670701 CATCGGCGGGCACAA CTGCTGCCTGCGCG ATGG CGCGCCGG-AGCAG TCGCGTTTGCGCGTC TERM 1375 2670859 - 2670825 - G 75 -15.7 -2.78463 | gap 1, overlap 2670828 ACCTCGGCGAGGACA CGACGCCGGTCAGCGG TTGC CCGC-GACCGGCGCTG CAGGAGGAACATGGC TERM 1376 2670856 - 2670828 - G 85 -18.2 -2.66316 | gap 1, overlap 2670825 TCGGCGAGGACACGA CGCCGGTCAGCGG TTGC CCGC-GACCGGCG CTGCAGGAGGAACAT mbtB 2675837 - 2671593 - | phenyloxazoline synthase MBTB (phenyloxazoline synthetase) TERM 1377 2674844 - 2674800 - G 72 -12 -3.54741 | gap 1, overlap 2674761 2674762 2674801 CAGCACGTTGGCAAA GGCCGCGGCCAGCGTCATCGC CGGG GTGATGCCGCGGGCC-CGGGC TCGGGCGAACAACGC TERM 1378 2675961 - 2675992 + G 82 -12.4 -3.92522 | gap 1, opp_overlap 2675947 AGGCGGCAGATGGCC GCCGACCCAGTCC CGACGGC GGACTGGGT-GGC TTTGTACCGTTCCCC TERM 1379 2677431 - 2677419 - g 79 -3.3 -5.00884 | opp_overlap 2677420, overlap 2677420 ATCTGGGGGAAAAAA TCTGC GCT GCAGT CGTTTTCGCTGGAGC mbtA 2675936 - 2677633 + | bifunctional salicyl-AMP ligase/salicyl-S-arcp synthetase TERM 1380 2678207 - 2678253 + G 72 -7.1 -4.17762 | overlap 2678209 2678225 ATCTGACCGTCGACA TGCTGCTGCAACCCGAGGTCG CCGCC CGACCTCCGGCGGCGGTGGTG TTGTTTTCGCCGCTG mbtJ 2677729 - 2678649 + | putative acetyl hydrolase MBTJ mbtI 2680005 - 2678653 - | salicylate synthase MbtI TERM 1381 2680104 - 2680090 - H 76 -5.7 -4.65916 | TCGACTGGAAGAAAA TGCTC GTCGG GAGCA AATGGCACCAGCCGG Rv2387 2680765 - 2682018 + | hypothetical protein hemN 2683142 - 2682015 - | coproporphyrinogen III oxidase rpfD 2683712 - 2683248 - | resuscitation-promoting factor RpfD Rv2390c 2684266 - 2683709 - | hypothetical protein nirA 2684679 - 2686370 + | ferredoxin-dependent nitrite reductase NIRA cysH 2686367 - 2687131 + | phosphoadenosine phosphosulfate reductase Rv2393 2687128 - 2687973 + | hypothetical protein ggtB 2688010 - 2689941 + | gamma-glutamyltranspeptidase precursor GgtB TERM 1382 2690001 - 2690012 + F 70 -7.2 -4.08164 | overlap 2690006 CCGATAATTTTGCCG GCCC TCTC GGGC TTTGTCTGCGGTTTT TERM 1383 2690654 - 2690700 + G 71 -13.7 -2.85813 | overlap 2690651 CGAGTAGGTTCCGGT GCGACGATGATCGGTGCCAGC TTGTC GCTGGCGTTGATCGGCGTCGG TCATCTTGTTGGCGT TERM 1384 2690854 - 2690893 + G 75 -12 -3.63991 | overlap 2690880 GACGGACGTGCGGTT CATCGGGGCGGGCGCCAT TGCG GTGGCGGCCGCCTGGACG TTCTTGAAGATCCTG Rv2395 2690072 - 2692075 + | integral membrane protein PE_PGRS41 2692799 - 2693884 + | PE-PGRS family protein cysA1 2694964 - 2693909 - | sulfate-transport ATP-binding protein ABC transporter CysA1 cysW 2695799 - 2694981 - | sulfate-transport integral membrane protein ABC transporter CysW cysT 2696647 - 2695796 - | sulfate-transport integral membrane protein ABC transporter CysT TERM 1385 2696064 - 2696045 - G 71 -9.2 -3.80733 | overlap 2696021 CGCACCGGATAACAA TGCCGGCG TCAG CGACGGCA ACACCACCGAAGTGA TERM 1386 2696622 - 2696596 - G 70 -10.7 -3.53012 | CCGCGGGGCCGGAAA GGCGCGCGCGG AACTG CGGCGCGCGGC GTTCGCCGACCAACG subI 2697714 - 2696644 - | sulfate-binding lipoprotein TERM 1387 2696796 - 2696780 - G 75 -9.3 -4.09511 | opp_overlap 2696795, overlap 2696781 AACAGGTCGGCAAAA TCGGCGG CGA CCGCCGG ATCGACCGGCCGGAA Rv2401 2697728 - 2698057 + | hypothetical protein Rv2401A 2698245 - 2698042 - | hypothetical protein Rv2402 2698529 - 2700457 + | hypothetical protein TERM 1388 2700519 - 2700478 - T 90 -19.7 -2.79183 | gap 1, opp_overlap 2700478 2700485, overlap 2700485 CCGATGCCGAGCAGA CGCAAAATCGCCCAAATTCG GGC CGAAAT-GGGCGATTTTGCG TCTGCTCGGCAAGCG TERM 1389 2700478 - 2700519 + T 90 -19.7 -2.78384 | gap 1, opp_overlap 2700478 2700485, overlap 2700485 CCGATGCCGAGCAGA CGCAAAATCGCCCAAATTCG GGC CGAAAT-GGGCGATTTTGCG TCTGCTCGGCAAGCG TERM 1390 2700485 - 2700512 + T 83 -9.2 -4.24948 | gap 1, opp_overlap 2700485 2700478, overlap 2700478 CGAGCAGACGCAAAA TCGCCCAAATTCG GGC CGAAAT-GGGCGA TTTTGCGTCTGCTCG TERM 1391 2700512 - 2700485 - T 83 -9.2 -4.24948 | gap 1, opp_overlap 2700478 2700485, overlap 2700478 CGAGCAGACGCAAAA TCGCCCAAATTCG GGC CGAAAT-GGGCGA TTTTGCGTCTGCTCG lppR 2701290 - 2700535 - | lipoprotein LppR TERM 1392 2700798 - 2700818 + g 78 -14.7 -3.3334 | opp_overlap 2700796 AGCGTTGACCGAACG CGCTGGCGG GCA CCGTCAGCG TTGTGCCATCACATT TERM 1393 2700940 - 2700965 + g 75 -9 -4.13767 | gap 1, opp_overlap 2700936 2700935 CACCGAGGAACCGTC GTGTCGCCACG ACACC CG-GGCGACGC TTTTGACCTCGACGG lepA 2703248 - 2701287 - | GTP-binding protein LepA Rv2405 2703269 - 2703838 + | hypothetical protein Rv2406c 2704437 - 2704009 - | hypothetical protein Rv2407 2704697 - 2705518 + | ribonuclease Z Rv2409c 2707333 - 2706494 - | hypothetical protein PE24 2706017 - 2706736 + | PE family protein Rv2410c 2708310 - 2707333 - | hypothetical protein Rv2411c 2709965 - 2708310 - | hypothetical protein TERM 1394 2710312 - 2710284 - g 79 -3.8 -4.87665 | gap 1, overlap 2710303 CGTGATCCACAAAAA CCAG-GCCGCC AACAAGAA GTCGGCACTGG CCCAGGCGCTCAACA rpsT 2710075 - 2710335 + | 30S ribosomal protein S20 Rv2413c 2711301 - 2710351 - | hypothetical protein Rv2414c 2712876 - 2711332 - | hypothetical protein TERM 1395 2712071 - 2712040 - G 73 -13.7 -3.19157 | gap 1, overlap 2712032 2712060 GACGAATGCCACCAA CGCG-ACGGCCGCG CACAC CACGGCCGCACGCG GTCCGATCAACCGTG Rv2415c 2713784 - 2712891 - | hypothetical protein eis 2715332 - 2714124 - | hypothetical protein Rv2417c 2716314 - 2715472 - | hypothetical protein Rv2418c 2717138 - 2716395 - | hypothetical protein Rv2419c 2717799 - 2717128 - | phosphoglycerate mutase (phosphoglyceromutase) Rv2420c 2718176 - 2717796 - | hypothetical protein nadD 2718808 - 2718173 - | nicotinic acid mononucleotide adenylyltransferase TERM 1396 2718368 - 2718406 + g 71 -12.4 -3.34013 | opp_overlap 2718368 CTCGACCAGAGTCAA CGCATCCTTGGCCAGCTG ACC CAGCAGGCTAGTGATGTG TTCGTTGCGCAACTC Rv2422 2719083 - 2719355 + | hypothetical protein TERM 1397 2719926 - 2719875 - g 74 -12.4 -3.50393 | gap 2 CGTCATCTCATACAA CGCCC-CCAT-GGGCCCGACCTTG CACTAC CAAGTCCGAGCCCAATGGCGGACG GTGGCGCAGGAATAC TERM 1398 2720551 - 2720510 - g 70 -4.2 -4.49311 | opp_overlap 2720529, overlap 2720511 ACGACTACGAGAAAA CGCACCTGCCACCGGGCG CCTGGC CGCCCACCAGTTGGTACG CCGACTGGATCCGTG Rv2423 2719597 - 2720643 + | hypothetical protein TERM 1399 2720683 - 2720656 - T 84 -11.2 -4.12188 | opp_overlap 2720649 2720660 TGAGCAGTCGCAAAA GCCCCCGAAACC GGTC GGATTTGGGGGC TGGTACGTGAATTAG Rv2424c 2721777 - 2720776 - | transposase Rv2425c 2723308 - 2721866 - | hypothetical protein Rv2426c 2724183 - 2723308 - | hypothetical protein proA 2725477 - 2724230 - | gamma-glutamyl phosphate reductase TERM 1400 2725348 - 2725364 + g 70 -11.5 -3.36991 | overlap 2725347 GTAGCTCGTCGGCAG CCGCGTG CAG CGCGCGG TCTTTGACAGTCGTC TERM 1401 2725700 - 2725666 - H 100 -20.1 -4.01603 | GAGCTAAACACCAAA CCGATTCGTCGCGCC GGGCA GGGGCGACGAATCGG GCGAGTTCCAGCCGG ahpC 2726193 - 2726780 + | alkyl hydroperoxide reductase subunit C ahpD 2726806 - 2727339 + | alkyl hydroperoxide reductase subunit D PPE41 2727920 - 2727336 - | PPE family protein PE25 2728266 - 2727967 - | PE family protein TERM 1402 2728073 - 2728053 - G 73 -11.1 -3.64283 | CAAACTCCTCAAGAA CCACCGCCG CCG CAGCGATGG TCTGCCGATACTTCC Rv2432c 2728847 - 2728437 - | hypothetical protein Rv2433c 2729134 - 2728844 - | hypothetical protein Rv2434c 2730560 - 2729115 - | transmembrane protein Rv2435c 2732749 - 2730557 - | cyclase TERM 1403 2731965 - 2731981 + g 74 -12.3 -3.60296 | CAGGTAAAGTCGACG GCGTTGG CGC CCAACGC TTTAAGGTAGGCGTC rbsK 2733230 - 2734144 + | ribokinase RBSK TERM 1404 2734466 - 2734449 - g 71 -12.7 -3.28791 | opp_overlap 2734455 AGGTTGCCGGCATAA TCCCGGC GACG GCCGGGA TCGCGGCCACGGTTT Rv2437 2734376 - 2734795 + | hypothetical protein nadE 2736831 - 2734792 - | NAD synthetase Rv2438A 2736709 - 2736987 + | hypothetical protein proB 2738247 - 2737117 - | gamma-glutamyl kinase TERM 1405 2737507 - 2737474 - G 70 -10.9 -3.53012 | overlap 2737454 2737476 GGGCCGGGCCGCAAA CACCGTGCCCACCGA CGCG TCGGCGAGCGCGGTC GCGGCGTCGGCCGCG TERM 1406 2737505 - 2737476 - G 73 -13.5 -3.34398 | overlap 2737454 2737474 GCCGGGCCGCAAACA CCGTGCCCACCGA CGCG TCGGCGAGCGCGG TCGCGGCGTCGGCCG obgE 2739686 - 2738247 - | GTPase ObgE TERM 1407 2738760 - 2738736 - G 73 -12.1 -3.39327 | opp_overlap 2738738, overlap 2738697 GGTCGACACGCAGAA CACCGGCCAGC CGC GCTGGGCGATG TCGTCACGGACGAAC TERM 1408 2739431 - 2739453 + g 75 -11.9 -3.63515 | opp_overlap 2739431 2739430 CTTTCACTTCCAAAT CCGCGCCGG CGGCC CCGTCGCGG TTATTGCCCATCCCG rpmA 2740032 - 2739772 - | 50S ribosomal protein L27 rplU 2740361 - 2740047 - | 50S ribosomal protein L21 TERM 1409 2740609 - 2740572 - RH 100 -31.5 -3.86202 | CGCCAGCACACGAAA GTGCGCCGGTAGCGTCG ATCT CGACGCTACCGGCGCAC TCCGGGGCCCGGGTG rne 2744984 - 2742123 - | ribonuclease E dctA 2740709 - 2742184 + | C4-dicarboxylate-transport transmembrane protein DctA TERM 1410 2744274 - 2744319 + gT 72 -5.4 -4.30576 | gap 3, opp_overlap 2744263, overlap 2744276 2744281 AGAAGCCGACTTACG CCGT-CGCCGGCGGCGCCGGCGA CGA TTGCCGGC-CT-CCAGCGAACCG TTTTCGTCCTCGCCG ndk 2745724 - 2745314 - | nucleoside diphosphate kinase Rv2446c 2746138 - 2745767 - | integral membrane protein folC 2747598 - 2746135 - | folylpolyglutamate synthase protein FolC TERM 1411 2746643 - 2746612 - G 70 -10.8 -3.54424 | gap 1 GGTGACGGCGGCAAA GCCGGCCCGGACGGC GTC GCCGTC-GAGCTGAC GCTGCGCACCGGCAC TERM 1412 2746686 - 2746666 - G 73 -3.9 -4.66163 | opp_overlap 2746684, overlap 2746667 2746668 ACCGGCACCGAAAAA GGCCTCG ACGGAAG CGAGGGC GAGCACCGCGTTGTG valS 2750225 - 2747595 - | valyl-tRNA synthetase Rv2449c 2751572 - 2750313 - | hypothetical protein TERM 1413 2751604 - 2751649 + r 100 -32.3 -4.12188 | opp_overlap 2751606 2751613, overlap 2751613 CGGGGTGCGCGAGCA GACGCAAAAGCTCCCAAATCC GACC GGATTTGGGAGCTTTTGCGTC TTTTCGCGGTGGTCA TERM 1414 2751647 - 2751606 - R 100 -29.1 -2.78384 | opp_overlap 2751604 2751613, overlap 2751613 GGGTGCGCGAGCAGA CGCAAAAGCTCCCAAATCC GACC GGATTTGGGAGCTTTTGCG TCTTTTCGCGGTGGT TERM 1415 2751640 - 2751613 - R 100 -18.6 -4.24948 | opp_overlap 2751604 2751613, overlap 2751606 CGAGCAGACGCAAAA GCTCCCAAATCC GACC GGATTTGGGAGC TTTTGCGTCTTTTCG TERM 1416 2751613 - 2751640 + r 100 -18.6 -4.35581 | opp_overlap 2751613 2751606, overlap 2751604 CGAGCAGACGCAAAA GCTCCCAAATCC GACC GGATTTGGGAGC TTTTGCGTCTTTTCG rpfE 2752180 - 2751662 - | resuscitation-promoting factor RpfE Rv2451 2752262 - 2752660 + | hypothetical protein Rv2452c 2752994 - 2752848 - | hypothetical protein mobA 2753623 - 2753018 - | molybdopterin-guanine dinucleotide biosynthesis protein A TERM 1417 2753477 - 2753461 - G 83 -9.3 -4.30576 | CGGCCATCACGAAAA CCGGCGC GCA GCGCTGG CCGAGAATGCCGACC Rv2454c 2754746 - 2753625 - | 2-oxoglutarate ferredoxin oxidoreductase subunit beta Rv2455c 2756704 - 2754743 - | oxidoreductase alpha subunit Rv2456c 2758192 - 2756936 - | integral membrane transport protein clpX 2759488 - 2758208 - | ATP-dependent protease ATP-binding subunit mmuM 2759779 - 2760687 + | homocysteine methyltransferase TERM 1418 2761043 - 2761074 + G 73 -3.6 -4.66938 | gap 1, overlap 2761037 CTGATGAGTTGCGCC CTGC-TGGGCGATCG CTA CGGTCGCAGGCGCAG TTTTGTGTTCGGGGT Rv2459 2760854 - 2762380 + | integral membrane transport protein clpP2 2763175 - 2762531 - | ATP-dependent Clp protease proteolytic subunit clpP 2763774 - 2763172 - | ATP-dependent Clp protease proteolytic subunit tig 2765291 - 2763891 - | trigger factor lipP 2765655 - 2766839 + | esterase/lipase LipP Rv2464c 2767665 - 2766859 - | DNA glycosylase Rv2465c 2768159 - 2767671 - | ribose-5-phosphate isomerase B Rv2466c 2768884 - 2768261 - | hypothetical protein TERM 1419 2770288 - 2770278 - g 72 -8.2 -4.07568 | overlap 2770279 GGCCGCGTTGGAAAA GGCC TCG GGCC GCGACCTGTCGAATT pepN 2768986 - 2771571 + | aminopeptidase N Rv2468c 2772147 - 2771644 - | hypothetical protein TERM 1420 2771774 - 2771729 - G 72 -13.2 -3.16742 | gap 1 TCGAACGCTGAGGAA GCGGCGGCAACCCCGAG-CGG AGCCG CCGACTCGGCACCGCGGCCGC GGACTTGCGAGCCGT Rv2469c 2773035 - 2772367 - | hypothetical protein glbO 2773178 - 2773564 + | globin GlbO TERM 1421 2774960 - 2774970 + G 87 -6.8 -5.09426 | opp_overlap 2774944, overlap 2774953 GCGCTGATGCCGGCT CGAC CTT GTCG TTTTTTCGACTTGCA aglA 2773564 - 2775204 + | alpha-glucosidase AglA Rv2472 2775272 - 2775565 + | hypothetical protein TERM 1422 2775970 - 2775960 - g 76 -2.4 -4.88918 | overlap 2775961 CGACGCGAAAGAAAA CGTC TGC GCCG CACACCGGATCGTGC Rv2473 2775568 - 2776284 + | alanine and proline rich membrane protein Rv2474c 2776969 - 2776316 - | hypothetical protein Rv2475c 2777391 - 2776975 - | hypothetical protein gdh 2782262 - 2777388 - | NAD-dependent glutamate dehydrogenase Rv2477c 2784042 - 2782366 - | putative ABC transporter ATP-binding protein TERM 1423 2782403 - 2782435 + g 77 -10.6 -3.85864 | gap 1, opp_overlap 2782369 TGGGTGACCCTATGC GGTCGAGCGGCGTCG ACAC CGA-GCCGTTCCACC TTGTTCTCCTCGTAG TERM 1424 2782705 - 2782728 + g 82 -6.6 -4.77036 | opp_overlap 2782721, overlap 2782721 GAGCCTGTTGCGCTC CCCGCCGG ATAGCACA CCGGCCGG TTTTTGCTGGTCCGG TERM 1425 2782754 - 2782790 + g 77 -13.1 -3.53811 | gap 1, opp_overlap 2782753 2782754 TCCGGTCCCTTAAAC CCGAA-TGCCGACACG TAGGCC CGTGACGGCACTTCGG TTTGACCGACCTGGA TERM 1426 2783285 - 2783298 + g 83 -3.1 -5.252 | gap 1, overlap 2783268 2783286 2783293 TTGCGGCCTTGCACC G-CGAG CCG CTCGGC TTTTTTCTCCAGATA Rv2478c 2784608 - 2784123 - | hypothetical protein Rv2479c 2785697 - 2784657 - | transposase Rv2480c 2785918 - 2785592 - | transposase Rv2481c 2786898 - 2786575 - | hypothetical protein plsB2 2789283 - 2786914 - | glycerol-3-phosphate acyltransferase plsC 2791022 - 2789280 - | bifunctionnal putative L-3-phosphoserine phosphatase/1-acyl-SN-glycerol-3-phosphate acyltransferase TERM 1427 2790712 - 2790738 + g 72 -11.5 -3.60805 | gap 1, opp_overlap 2790713, overlap 2790713 TCCAGGTCGGTCAAG AGCCGCC-CGGC CAGC GCCGCGGCGGCC TTTCCGATAAGGTCT TERM 1428 2790713 - 2790737 + g 72 -15 -2.76162 | gap 1, opp_overlap 2790713, overlap 2790712 CCAGGTCGGTCAAGA GCCGCC-CGGC CAGC GCCGCGGCGGC CTTTCCGATAAGGTC TERM 1429 2790737 - 2790713 - G 74 -15 -3.02144 | gap 1, opp_overlap 2790713 2790712 CCAGGTCGGTCAAGA GCCGCC-CGGC CAGC GCCGCGGCGGC CTTTCCGATAAGGTC TERM 1430 2790921 - 2790903 - G 75 -4.4 -4.59773 | overlap 2790904 2790907 GTCCAGGTCGAAAAA CGCACCGA CCT TCGGGCCG GCAGGACTGGCCAGA Rv2484c 2792494 - 2791019 - | hypothetical protein lipQ 2793988 - 2792723 - | carboxylesterase LipQ TERM 1431 2794035 - 2794053 + H 95 -10.2 -4.46155 | opp_overlap 2794036, overlap 2794036 GCATCGTTGCGGTAA ACGGCTGG TTG CCAGCCGG TTTTGTACGTGTGTC TERM 1432 2794052 - 2794036 - H 79 -13.7 -3.53224 | opp_overlap 2794036 2794035 CATCGTTGCGGTAAA CGGCTGG TTG CCAGCCG GTTTTGTACGTGTGT TERM 1433 2794036 - 2794052 + H 77 -13.7 -3.2697 | opp_overlap 2794036, overlap 2794035 CATCGTTGCGGTAAA CGGCTGG TTG CCAGCCG GTTTTGTACGTGTGT TERM 1434 2794804 - 2794757 - g 78 -9.8 -4.07568 | gap 1 CGCCCGCTTCCAAAA GCT-GGGACTGCATCCAGGTGGC GGC GCAACCTGGATGCTGCAGCGAGC GGTGGGTCCGCAGGT TERM 1435 2794817 - 2794832 + G 70 -8.2 -3.95324 | AGCGGTGGGTCCGCA GGTCGC CCGT GCGGCC TTATTGTTCGGCATG echA14 2794350 - 2795120 + | enoyl-CoA hydratase TERM 1436 2795183 - 2795205 + T 74 -14.8 -2.52623 | overlap 2795182 2795180 GCTGCTGCTTGACTC CGCGCGCTGG GCC CGAGCGCGCG CTGTTGTACGGCCCA TERM 1437 2795278 - 2795324 + T 81 -15.7 -3.05384 | gap 1 CGGCCCCCCGACTCC GGCAGGCCCGACGGCGCCCAGC GCTA GCCGGGCGC-GCCGGCCATGCC TTCGGTGCCGGAAAC PE_PGRS42 2797385 - 2795301 - | PE-PGRS family protein TERM 1438 2795993 - 2795958 - G 81 -11.6 -3.9461 | overlap 2795959 GTTGCCGAACAACAA CCCGCCGGCGCCGCCG TTGC CGCCCGCGCCGCCGGT CCCGCCGGCGCCGCC TERM 1439 2795992 - 2795959 - G 74 -15.1 -2.96444 | overlap 2795958 TTGCCGAACAACAAC CCGCCGGCGCCGCCG TTGC CGCCCGCGCCGCCGG TCCCGCCGGCGCCGC TERM 1440 2796325 - 2796292 - G 77 -12.4 -3.68351 | opp_overlap 2796292, overlap 2796293 CCGTTACCACCGAAA CCGCCGCTACCACC GGTAGA GGTGGCAGTGGCGA TGTGTACGAAAGCGC TERM 1441 2796324 - 2796293 - G 71 -13.7 -2.80796 | opp_overlap 2796292, overlap 2796292 CGTTACCACCGAAAC CGCCGCTACCACC GGTAGA GGTGGCAGTGGCG ATGTGTACGAAAGCG TERM 1442 2796352 - 2796337 - G 75 -11.8 -3.73775 | GCGATGTGTACGAAA GCGCCG CCTC CGGCGC CGCCGCTACCACCCC TERM 1443 2797365 - 2797342 - G 81 -12.4 -3.84451 | CTCGCTAAATCCAAA GCCGCAGTTG CCAG CAGCTGCGGC GTCGCGATCACCAAC Rv2488c 2800880 - 2797467 - | LuxR family transcriptional regulator TERM 1444 2799977 - 2799947 - GR 76 -8.1 -4.19238 | CCGGCAACCCCAAAA CCCGCGCCGCCGC GATCG GCACCAGCGCCGG GTCGGTGATCGGCGC Rv2489c 2801145 - 2800846 - | hypothetical protein PE_PGRS43 2806236 - 2801254 - | PE-PGRS family protein TERM 1445 2801886 - 2801914 + g 83 -15.3 -3.53012 | gap 1 GATTGCCGACCTCGC CGGCGGGTGCCG ACCCGC CGGC-CCCGCCG TTTCCGCCGGCGCCG TERM 1446 2805147 - 2805166 + g 70 -10.6 -3.53012 | ACCCGCCAGCACCCC CGGCGCCG CCCA CGCCGCCG TTTCCGCCGGCACCG TERM 1447 2806216 - 2806193 - G 73 -6.6 -4.34402 | CGCGCCAGATCAAAA GCCGCAGTTG CCAT CATCTCCGGC GTCGCGATCACATAT TERM 1448 2806905 - 2806934 + G 72 -11.5 -3.57263 | gap 1 TCGGACGCCGACGGC CTTGTCGT-CGGCG TCC TGCCGGGCGACAAG TTTACCGATGGCAAT Rv2491 2806665 - 2807288 + | hypothetical protein Rv2492 2807278 - 2808030 + | hypothetical protein Rv2493 2808083 - 2808304 + | hypothetical protein Rv2494 2808310 - 2808735 + | hypothetical protein pdhC 2809939 - 2808758 - | branched-chain alpha-keto acid dehydrogenase subunit E2 pdhB 2810982 - 2809936 - | pyruvate dehydrogenase E1 component beta subunit PdhB pdhA 2812096 - 2810993 - | pyruvate dehydrogenase E1 component alpha subunit PdhA citE 2813176 - 2812355 - | citrate (Pro-3S)-lyase beta subunit Rv2499c 2813730 - 2813173 - | oxidase regulatory-like protein TERM 1449 2813284 - 2813294 + g 72 -8.2 -4.14511 | TGTGACGATGCCCTC GCCG GGC CGGC TTTTCGACTCACGTT fadE19 2814911 - 2813727 - | acyl-CoA dehydrogenase accA1 2816880 - 2814916 - | acetyl-/propionyl-coenzyme A carboxylase subunit alpha TERM 1450 2815827 - 2815769 - G 76 -15.1 -3.19463 | gap 1, overlap 2815770 CCTAGCAGTGACGAA TCCACCCGCACCCCGGGGCCGGCGG-GT TCGA ACACCGCCAGCACCCGGCCGCCGGTGGG CAGGAATTCCCGCGC TERM 1451 2815826 - 2815770 - G 87 -18.6 -2.51464 | gap 1, overlap 2815769 CTAGCAGTGACGAAT CCACCCGCACCCCGGGGCCGGCGG-GT TCGA ACACCGCCAGCACCCGGCCGCCGGTGG GCAGGAATTCCCGCG TERM 1452 2816080 - 2816026 - G 72 -4.8 -4.47707 | overlap 2816028 2816052 CTCCATGAAAAAGAA CT-CGTCGGGGCGCTGCGCGGAGACG ATGAA CTCCACCGTGCCG-GCGCCGACGTAG TCCACGCAGCGGGCG accD1 2818474 - 2816885 - | acetyl-/propionyl-CoA carboxylase subunit beta TERM 1453 2817327 - 2817366 + g 73 -14.2 -3.21276 | opp_overlap 2817360, overlap 2817325 2817328 CCATGCTTGGCGATT CCGCCGGCCTCGTAGTCG CGGC CGACCATGAAGCCGGCGA TGTTCTGCAGGAACA TERM 1454 2817328 - 2817365 + g 85 -17.7 -2.52623 | opp_overlap 2817360, overlap 2817327 2817325 CATGCTTGGCGATTC CGCCGGCCTCGTAGTCG CGGC CGACCATGAAGCCGGCG ATGTTCTGCAGGAAC TERM 1455 2818366 - 2818397 + g 84 -13.7 -3.99494 | GGCGTTTCCGGGCGC GTTCGTTGCCGCC CAGGGC GGCGGCGGCGAGC TTATTGTTCAATTCC scoB 2819127 - 2818471 - | succinyl-CoA:3-ketoacid-coenzyme A transferase subunit beta ScoB scoA 2819870 - 2819124 - | succinyl-CoA:3-ketoacid-coenzyme A transferase subunit alpha ScoA TERM 1456 2819591 - 2819625 + g 83 -14.2 -3.78934 | opp_overlap 2819610, overlap 2819592 2819594 GGGTCAGTTCCACCT CGAGCTCGCCCGCGAG GAA CTGGCGGGCGAACTCC TTGTTCTCCCCCACG TERM 1457 2819592 - 2819624 + g 86 -17.7 -2.87146 | opp_overlap 2819610, overlap 2819591 2819594 GGTCAGTTCCACCTC GAGCTCGCCCGCGAG GAA CTGGCGGGCGAACTC CTTGTTCTCCCCCAC TERM 1458 2819594 - 2819622 + g 74 -14.5 -2.98545 | opp_overlap 2819610, overlap 2819592 2819591 TCAGTTCCACCTCGA GCTCGCCCGCGAG GAA CTGGCGGGCGAAC TCCTTGTTCTCCCCC fadD35 2821596 - 2819953 - | acyl-CoA synthetase TERM 1459 2822316 - 2822278 - g 73 -13.1 -3.25942 | gap 1, overlap 2822265 2822264 AGCGGCCGACAGCAA GCCGGCACGGACGGTGCG TGCA CGCGCCGTCC-TACGGGC GATGACGGTCGCCGC Rv2506 2821712 - 2822359 + | TetR family transcriptional regulator Rv2507 2822438 - 2823259 + | proline rich membrane protein Rv2508c 2824593 - 2823256 - | hypothetical protein Rv2509 2824678 - 2825484 + | short-chain type dehydrogenase/reductase Rv2510c 2827089 - 2825488 - | hypothetical protein orn 2827157 - 2827804 + | oligoribonuclease Rv2512c 2829803 - 2828556 - | IS1081 transposase TERM 1460 2830466 - 2830420 - g 70 -10.1 -3.65902 | gap 1, opp_overlap 2830424 TCTACGCCAGCCAAA TCGAGCCGAGAGTGGGCGACCC GGAA GGGCC-CACACTCCTGGCTGGA TTCGGCAATATCCCT Rv2513 2830161 - 2830583 + | hypothetical protein Rv2514c 2831338 - 2830877 - | hypothetical protein Rv2515c 2832591 - 2831344 - | hypothetical protein Rv2516c 2833513 - 2832710 - | hypothetical protein Rv2517c 2833761 - 2833510 - | hypothetical protein lppS 2835335 - 2834109 - | lipoprotein LppS TERM 1461 2835136 - 2835079 - G 72 -14.8 -2.78463 | gap 2 ACGGCCGCCAGCACA CCGTCGGCGGCGGTCACCGACACCGGTG CATC CAC-GGTGACGCCGACGG-CGCCGTCGG TGACCGACGCGGTGA TERM 1462 2836385 - 2836369 - g 75 -11.5 -3.62597 | GTTATGGGGCAACAA CGGCGCC GCT GGCACCG GCGACCCAGTTAACG PE26 2835785 - 2837263 + | PE family protein Rv2520c 2837615 - 2837388 - | hypothetical protein bcp 2837684 - 2838157 + | bacterioferritin comigratory protein BCP Rv2522c 2839541 - 2838129 - | hypothetical protein acpS 2839930 - 2839538 - | 4'-phosphopantetheinyl transferase fas 2849332 - 2840123 - | fatty acid synthase TERM 1463 2840940 - 2840978 + g 95 -20.5 -2.70932 | gap 2, opp_overlap 2840932 2840935 2840963 GCCAACAGGATCGTC CCGCCGCC-T-TGGGCTTC GAC GAAGCCCAGACGGCGGCGG TCGTTGGGCCGGGAA TERM 1464 2843218 - 2843237 + g 75 -11.4 -3.65046 | GGGCGCTGGCCCAGC GGTCGTCG AATA CGACGGCC TTCTTGGGGTCGAAC TERM 1465 2845533 - 2845487 - G 86 -9.3 -4.60487 | opp_overlap 2845531, overlap 2845488 CACCATGCCCAAAAA CCGCGC-GGTCCAGCCGACCAGC CGG GCCGGT-GGCCGGGCCTGCCCGT CGGTGGCGGTCACCG TERM 1466 2845532 - 2845488 - G 73 -12.8 -3.3581 | opp_overlap 2845531, overlap 2845487 ACCATGCCCAAAAAC CGCGC-GGTCCAGCCGACCAGC CGG GCCGGT-GGCCGGGCCTGCCCG TCGGTGGCGGTCACC TERM 1467 2849004 - 2848978 - G 73 -13.6 -3.23853 | opp_overlap 2848984, overlap 2848976 TCTGGGTAAGCAACA CGCCGGGCACCG ACA CGGCGGCCGACG TCAGGTGCTTGTCGG TERM 1468 2849665 - 2849682 + r 72 -2 -4.78237 | gap 1, opp_overlap 2849665 GTGGAGTAGCTATAA CTGCGCT GATCA AG-GCAG TTTTGTTATCAAATC Rv2525c 2850574 - 2849852 - | hypothetical protein Rv2526 2851091 - 2851318 + | hypothetical protein Rv2527 2851315 - 2851716 + | hypothetical protein mrr 2852671 - 2851751 - | restriction system protein mrr Rv2529 2852875 - 2854266 + | hypothetical protein Rv2530c 2854686 - 2854267 - | hypothetical protein Rv2530A 2854907 - 2854683 - | hypothetical protein Rv2531c 2857781 - 2854938 - | amino acid decarboxylase Rv2532c 2858254 - 2857853 - | hypothetical protein nusB 2858724 - 2858254 - | transcription antitermination protein NusB efp 2859290 - 2858727 - | elongation factor P pepQ 2860418 - 2859300 - | cytoplasmic peptidase PepQ TERM 1469 2859467 - 2859439 - G 76 -14.5 -3.18571 | opp_overlap 2859437, overlap 2859437 2859433 2859435 2859440 CCGGGTAAATAGACA CCGGGCTCCACGG TCA CCACGGAGCCCGC CAGTAGTGTACCGGC TERM 1470 2859466 - 2859440 - G 85 -18 -2.50821 | opp_overlap 2859437, overlap 2859439 2859437 2859433 2859435 CGGGTAAATAGACAC CGGGCTCCACGG TCA CCACGGAGCCCG CCAGTAGTGTACCGG TERM 1471 2861022 - 2861005 - g 77 -10.5 -3.92075 | AGCCTGAGGCACAAA CCGCGGC CGTC GCCACGG TCGAACGTGAGGCAC Rv2536 2860452 - 2861144 + | transmembrane protein aroD 2861591 - 2861148 - | 3-dehydroquinate dehydratase aroB 2862676 - 2861588 - | 3-dehydroquinate synthase aroK 2863203 - 2862673 - | shikimate kinase aroF 2864412 - 2863207 - | chorismate synthase Rv2541 2864427 - 2864834 + | hypothetical protein TERM 1472 2865115 - 2865165 + F 70 -10.3 -3.61178 | opp_overlap 2865105, overlap 2865116 GAAGACCAGCTGGAG GCCAACC-GGCGGGCGGTGCTGGAC GCT GTC-AGCGACGCCCGCCGGGACGGG TTTGCCGTCGGTGAG TERM 1473 2865116 - 2865164 + F 72 -13.8 -2.76492 | opp_overlap 2865105, overlap 2865115 AAGACCAGCTGGAGG CCAACC-GGCGGGCGGTGCTGGAC GCT GTC-AGCGACGCCCGCCGGGACGG GTTTGCCGTCGGTGA TERM 1474 2865906 - 2865924 + G 71 -3.1 -4.59109 | gap 1, overlap 2865905 TCTCGCGCAGGCCGG CG-CTCCG AAGT TGGAGGCG TTTTTGCGGGATCTG Rv2542 2865130 - 2866341 + | hypothetical protein lppA 2866468 - 2867127 + | lipoprotein LppA lppB 2867124 - 2867786 + | lipoprotein LppB Rv2545 2867783 - 2868061 + | hypothetical protein Rv2546 2868154 - 2868567 + | hypothetical protein Rv2547 2868606 - 2868863 + | hypothetical protein Rv2548 2868860 - 2869237 + | hypothetical protein Rv2549c 2870122 - 2869727 - | hypothetical protein Rv2550c 2870364 - 2870119 - | hypothetical protein Rv2551c 2871194 - 2870775 - | hypothetical protein aroE 2872015 - 2871206 - | shikimate 5-dehydrogenase Rv2553c 2873265 - 2872012 - | hypothetical protein TERM 1475 2873159 - 2873131 - G 100 -26.1 -3.60296 | opp_overlap 2873131 CAGGCTCAGGGCAAA TCCGCCGGCGACG CGC CGTCGCCGGCGGA TTTGTTGGGCGTGTC TERM 1476 2873131 - 2873159 + g 100 -26.1 -4.17556 | opp_overlap 2873131 CAGGCTCAGGGCAAA TCCGCCGGCGACG CGC CGTCGCCGGCGGA TTTGTTGGGCGTGTC Rv2554c 2873770 - 2873258 - | Holliday junction resolvase-like protein alaS 2876485 - 2873771 - | alanyl-tRNA synthetase Rv2556c 2876965 - 2876576 - | hypothetical protein Rv2557 2877072 - 2877746 + | hypothetical protein TERM 1477 2877809 - 2877751 - f 76 -13.8 -3.14211 | opp_overlap 2877761 AGCTGGTCTGATCAA CCCGC-CGGCGGCAGTACCGGCCCGAGC CCGAC GCT-GGGCCGGCACTGCTGTCGTGCGTC GAGCGGCGCTCGCGG TERM 1478 2877761 - 2877798 + F 86 -17.8 -2.80816 | gap 1, opp_overlap 2877751 ATCAACCCGCCGGCG GCAGTACCGGCCCGAGC CCGAC GCT-GGGCCGGCACTGC TGTCGTGCGTCGAGC Rv2558 2877831 - 2878541 + | hypothetical protein Rv2559c 2879929 - 2878571 - | recombination factor protein RarA TERM 1479 2878844 - 2878859 + g 74 -10.4 -3.76952 | CATCGCCGCGGCCAA CGCCGT GGTG ACGGCG TTTGACTTCGGTGCG Rv2560 2880075 - 2881052 + | hypothetical protein TERM 1480 2881357 - 2881315 - f 74 -9.9 -3.72893 | gap 1, opp_overlap 2881353, overlap 2881326 CAGGTGGTTAGCAAA TCGCCGACGA-ACACGACGC CACC GCGTCATGCGCCATCGCCGA CCCCGCCTTGGTGGC Rv2561 2881409 - 2881702 + | hypothetical protein Rv2562 2881758 - 2882147 + | hypothetical protein Rv2563 2882290 - 2883339 + | glutamine-transport transmembrane protein ABC transporter glnQ 2883342 - 2884334 + | glutamine-transport ATP-binding protein ABC transporter GlnQ TERM 1481 2886107 - 2886129 + G 83 -12.6 -4.07568 | GCCGCCAATCGTTAC GCCGCCCGGG CTC CTCCGGCGGC TTTTGACCGGCACGG Rv2565 2884611 - 2886362 + | hypothetical protein TERM 1482 2887441 - 2887488 + G 73 -13.3 -3.28119 | gap 1 CAGCGCGTCGATGAG CGGCTGGCCGCCGCCGAC-GTC CGGCT GACCGTCGGCGGCGAACCGACG TTCGTGTCGGTGGAT Rv2566 2886373 - 2889795 + | hypothetical protein Rv2567 2889795 - 2892449 + | hypothetical protein Rv2568c 2893471 - 2892446 - | hypothetical protein TERM 1483 2892655 - 2892639 - G 85 -10.1 -4.2717 | ATGATGGTATTAAAA GCGCTGG GGC CCAACGC CGGCCGGTCGAAGGT Rv2569c 2894408 - 2893464 - | hypothetical protein TERM 1484 2894050 - 2894089 + g 80 -17 -2.62184 | gap 1 GATCCGGGCAGCCCG GCGGGCCGG-GCCGCCTCC CAC GGTTGCAGCGCCGGCCCGC TGGTGTAAAGCCCGG Rv2570 2894512 - 2894901 + | hypothetical protein Rv2571c 2895960 - 2894893 - | transmembrane alanine and valine and leucine rich protein aspS 2897803 - 2896013 - | aspartyl-tRNA synthetase TERM 1485 2896587 - 2896621 + g 70 -11.2 -3.53012 | opp_overlap 2896567 AGCCGGTTGGCGATC TCGACGCGGGCCGCGC CCA GCAGTGCCCGCGACGA TTTGACCGGACCGGC TERM 1486 2896681 - 2896709 + g 70 -3.6 -4.56597 | CCCCGACATGGTCGG CCAGTCCGGTGC GCTCG GCCTCGGTCAGG TTTTTGGCCACCGGA TERM 1487 2898487 - 2898507 + G 71 -12.5 -3.29263 | overlap 2898488 CGGTCGGCAATGTTC CGCCGCGAC GAC GTCGCGGCA TTGTCGCGCCGCTAT TERM 1488 2898488 - 2898506 + G 74 -16 -2.57344 | overlap 2898487 GGTCGGCAATGTTCC GCCGCGAC GAC GTCGCGGC ATTGTCGCGCCGCTA Rv2573 2897956 - 2898783 + | 2-dehydropantoate 2-reductase TERM 1489 2899200 - 2899184 - g 71 -9.3 -3.87075 | opp_overlap 2899185 2899186 2899189, overlap 2899185 ACCATGGCGCAGAAA CTCGCCG GCC CGGCGCG GCCGGCGCTGTTCGT TERM 1490 2899235 - 2899249 + G 71 -9.2 -3.87373 | CGGCCCCTGCTGAAC CTGGCG CTG CGCCGG TTTCTAAGGAATCTG Rv2574 2898806 - 2899309 + | hypothetical protein Rv2575 2899339 - 2900220 + | hypothetical protein Rv2576c 2900690 - 2900226 - | hypothetical protein TERM 1491 2902246 - 2902278 + G 70 -6.2 -4.25283 | gap 1, opp_overlap 2902266, overlap 2902247 GCTGCTCTTCCCGCA GCCTCGGTGCCAGGT GATA ACC-GGCGTCGGGGA TTTTGATCCCGCGAT Rv2577 2900918 - 2902507 + | hypothetical protein Rv2578c 2903531 - 2902509 - | hypothetical protein dhaA 2903639 - 2904541 + | haloalkane dehalogenase hisS 2906092 - 2904821 - | histidyl-tRNA synthetase Rv2581c 2906763 - 2906089 - | glyoxalase II ppiB 2906814 - 2907740 + | peptidyl-prolyl cis-trans isomerase B relA 2910198 - 2907826 - | GTP pyrophosphokinase apt 2910900 - 2910229 - | adenine phosphoribosyltransferase Rv2585c 2912677 - 2911004 - | lipoprotein TERM 1492 2911801 - 2911829 + g 86 -16.7 -3.62224 | opp_overlap 2911797 ATCCCGATGAACCGG CCGCGACGTCGAC CAC GTCGACGCTGCGG TTGTTGACCCGGTCT TERM 1493 2912179 - 2912204 + g 75 -3.2 -4.82901 | gap 1, overlap 2912181 GGTCAACGACACTGC GATCCGGGATG AACGA CA-CCCGGGCC TTTTTCTGCCCCGCC secF 2914011 - 2912683 - | preprotein translocase subunit SecF secD 2915736 - 2914015 - | preprotein translocase subunit SecD yajC 2916193 - 2915846 - | preprotein translocase subunit YajC gabT 2916360 - 2917709 + | 4-aminobutyrate aminotransferase TERM 1494 2918584 - 2918534 - g 73 -13.9 -3.09933 | gap 1, opp_overlap 2918565 2918566 2918568 GCCGAACTGATCGAA CGCGGCA-GGGCGCTGCCGGCCAC ACCC ATTGCCGACAGCGCCGACGACGCG CTGGCGCTGCTGATT TERM 1495 2920190 - 2920204 + G 71 -2.7 -4.67353 | overlap 2920191 CGCACCGTACTGCTG ACCGG CGCCA CCGGC TTTTTGGGTCGCTAC TERM 1496 2920549 - 2920531 - g 72 -11.6 -3.53012 | opp_overlap 2920531 GCTGTTCGGCCCAAA CGCGGCGG GCA CCGCCGAG TTGCTTCGGCTGGCG TERM 1497 2920531 - 2920549 + G 70 -11.6 -3.35813 | opp_overlap 2920531 GCTGTTCGGCCCAAA CGCGGCGG GCA CCGCCGAG TTGCTTCGGCTGGCG fadD9 2917871 - 2921377 + | fatty-acid-CoA ligase TERM 1498 2922025 - 2922002 - g 72 -11.7 -3.53091 | gap 1, opp_overlap 2922017, overlap 2922005 ACGGCTTCTCCCAAA CGACCGCCGG GGTGG CCGGCGG-CG CCGGTGGTTCCGCGG TERM 1499 2922186 - 2922244 + G 71 -14.3 -2.85124 | opp_overlap 2922162, overlap 2922157 2922216 2922233 2922240 2922242 CGGCACAGGTGGAGC CGGCGGGGCCGGCGGCGACGCCCCA TTGATCGGC TGGGGCGGCAACGGCGGGCCCGGCG GTTTCGCTGCTTTTG TERM 1500 2922295 - 2922264 - g 72 -11.4 -3.53012 | opp_overlap 2922259 2922259 2922291 CGCTGCTTTTGGAAA CGGTGGGGCCGGCG GCAA CGGCGGCGCCAGCG GTTCGCTCTTTGGCG TERM 1501 2922656 - 2922692 + G 70 -10.8 -3.53811 | gap 1, opp_overlap 2922632 2922629, overlap 2922638 2922657 ACGGCGGCCTGGGCG GCGCCGGCGC-TGTGCT CATC GGCACGGGCGTCGGCGG TTTCGGCGGCCTCGG TERM 1502 2922877 - 2922916 + G 95 -20 -2.75957 | gap 1, overlap 2922867 GCCGCGCTGATCGGC CTG-GGCGCCGGCGGTGCC GGC GGTGCCGGCGGCGCCACAG TCGTTGGACTTGGTG PE_PGRS44 2921551 - 2923182 + | PE-PGRS family protein ruvB 2924233 - 2923199 - | Holliday junction DNA helicase B ruvA 2924820 - 2924230 - | Holliday junction DNA helicase motor protein ruvC 2925383 - 2924817 - | Holliday junction resolvase Rv2595 2925492 - 2925737 + | hypothetical protein Rv2596 2925734 - 2926138 + | hypothetical protein Rv2597 2926355 - 2926975 + | hypothetical protein Rv2598 2926986 - 2927480 + | hypothetical protein Rv2599 2927477 - 2927908 + | hypothetical protein Rv2600 2927990 - 2928391 + | integral membrane protein TERM 1503 2928444 - 2928487 + G 74 -12.2 -3.55444 | gap 1, overlap 2928448 2928453 GGTACGGTGGCGGGC CGTG-CTGCTGGCCGCGGTCG CGG CGTGCGCGGCCTGCGGTCTCG TTTACGAGCTCGCGC TERM 1504 2928448 - 2928482 + G 74 -14.8 -3.00704 | overlap 2928444 2928453 CGGTGGCGGGCCGTG CTGCTGGCCGCGGTCG CGG CGTGCGCGGCCTGCGG TCTCGTTTACGAGCT TERM 1505 2928453 - 2928484 + G 71 -13.7 -2.91144 | gap 1, overlap 2928448 2928444 GCGGGCCGTGCTGCT GGCCGC-GGTCGCG GCGTG CGCGGCCTGCGGTC TCGTTTACGAGCTCG speE 2928388 - 2929959 + | spermidine synthase Rv2601A 2930070 - 2930357 + | hypothetical protein Rv2602 2930344 - 2930784 + | hypothetical protein Rv2603c 2931560 - 2930805 - | hypothetical protein Rv2604c 2932289 - 2931693 - | glutamine amidotransferase subunit PdxT tesB2 2933142 - 2932297 - | acyl-CoA thioesterase II Rv2606c 2934070 - 2933171 - | pyridoxine biosynthesis protein TERM 1506 2934506 - 2934492 - g 72 -11.4 -3.54129 | TACACCTCCGCCAAA GGCGAG CAG CTCGCC GTGACACCATACGCA pdxH 2934198 - 2934872 + | pyridoxamine 5'-phosphate oxidase PPE42 2935046 - 2936788 + | PPE family protein Rv2609c 2937865 - 2936810 - | hypothetical protein pimA 2939001 - 2937865 - | alpha-mannosyltransferase PIMA TERM 1507 2938308 - 2938264 - G 82 -12.7 -3.92373 | overlap 2938265 CACCTGACCCAGAAA GCGCAGGTGCGCCGCCAAACG GCC CGCCTGGCCGCGCAACTGGTC GGCGTCGCCGTGGCC TERM 1508 2938306 - 2938265 - G 72 -13.7 -2.95102 | gap 1, overlap 2938264 ACCTGACCCAGAAAG CGCAGGTGCGCCGCCAAACG GCC CGCCTGGCCGCGCAACTG-G TCGGCGTCGCCGTGG Rv2611c 2939962 - 2939012 - | lipid A biosynthesis lauroyl acyltransferase pgsA1 2940612 - 2939959 - | CDP-diacylglycerol--inositol 3-phosphatidyltransferase Rv2613c 2941196 - 2940609 - | hypothetical protein thrS 2943267 - 2941189 - | threonyl-tRNA synthetase Rv2614A 2943376 - 2943603 + | hypothetical protein TERM 1509 2943582 - 2943615 + T 70 -12.4 -3.14132 | gap 1, opp_overlap 2943558, overlap 2943580 CCAGGTCTGGATTTC CGGCGCCGGCCGGCT CCGTT AGCCG-TCGGCTCCG TTGGTGCCGGCCAGG PE_PGRS45 2944985 - 2943600 - | PE-PGRS family protein TERM 1510 2944865 - 2944906 + g 72 -12.9 -3.13403 | overlap 2944856 2944863 CCTCGTCTTGGGCGG CGGCCAACACCTGGGTGGT CGCC GCCGCCGCGGTGTTGGCGG TGTTGATCGCCGAGC Rv2616 2945330 - 2945830 + | hypothetical protein Rv2617c 2946287 - 2945847 - | hypothetical protein Rv2618 2946434 - 2947111 + | hypothetical protein Rv2619c 2947449 - 2947096 - | hypothetical protein Rv2620c 2947887 - 2947462 - | transmembrane protein TERM 1511 2947670 - 2947651 - G 89 -10.6 -4.19704 | overlap 2947639 CAACGCGACCGAAAA CGCCGCGG CGAT CCGCGCCG GCGTCGAGCCGACCA Rv2621c 2948558 - 2947884 - | transcriptional regulatory protein Rv2622 2948636 - 2949457 + | methyltransferase (methylase) TB31.7 2949593 - 2950486 + | hypothetical protein Rv2624c 2951307 - 2950489 - | hypothetical protein Rv2625c 2952503 - 2951322 - | hypothetical protein Rv2626c 2952993 - 2952562 - | hypothetical protein Rv2627c 2954748 - 2953507 - | hypothetical protein Rv2628 2955058 - 2955420 + | hypothetical protein Rv2629 2955767 - 2956891 + | hypothetical protein Rv2630 2956893 - 2957432 + | hypothetical protein TERM 1512 2958603 - 2958618 + G 70 -6 -4.17048 | overlap 2958595 TGTGCTTGCCGGGGT CACCGG CAAC CCGGCG TTCTTTTCCACCGCG Rv2631 2957572 - 2958870 + | hypothetical protein Rv2632c 2959190 - 2958909 - | hypothetical protein Rv2633c 2959820 - 2959335 - | hypothetical protein PE_PGRS46 2962441 - 2960105 - | PE-PGRS family protein TERM 1513 2961201 - 2961231 + g 91 -16 -3.93369 | GCCTCGCCGACGCCA CCGGCGGGGCCGGG ACC CCCGTTCCCGCCAG TTTGATTCCCGTTGC TERM 1514 2961295 - 2961308 + g 71 -9.5 -3.85698 | opp_overlap 2961293 GGTTCGCAATCGAGC CGGGG TTGA CCCCG TTTGTCCCGGCCAGA TERM 1515 2962325 - 2962283 - G 73 -11.2 -3.66018 | overlap 2962304 GTACGACCCGAACAA GGCCGCAACTGCCGCCGA AACCTCA TCCGCGGCAGCCGCCACC ACCCCCGTGGTCGGC Rv2635 2962470 - 2962712 + | hypothetical protein TERM 1516 2962731 - 2962721 - g 70 -8.2 -3.91897 | overlap 2962722 GCGCTGAGTGATAAA CCCG ACC CGGG CCCGGCGGATGCGAT Rv2636 2962713 - 2963390 + | hypothetical protein dedA 2963586 - 2964242 + | transmembrane protein DedA Rv2638 2964405 - 2964851 + | hypothetical protein Rv2639c 2965358 - 2965026 - | hypothetical protein Rv2640c 2965837 - 2965478 - | ArsR family transcriptional regulator cadI 2965939 - 2966397 + | cadmium inducible protein CADI Rv2642 2966533 - 2966913 + | ArsR family transcriptional regulator arsC 2966910 - 2968406 + | arsenic-transport integral membrane protein ArsC Rv2644c 2968850 - 2968533 - | hypothetical protein TERM 1517 2968662 - 2968623 - G 71 -9.3 -3.86897 | gap 1 CGTAGTCTCGACAAA GCGGCTGCCCGAGATCGC GTGCG ACGATATCGGG-AGCGGC TGCGGCAACGAGGTC TERM 1518 2969129 - 2969110 - H 72 -4.2 -4.58395 | opp_overlap 2969109 2969112, overlap 2969113 GTTATCGGCCAAAAA CATGGTCA GGCT CGACCGTG CATTGCTGGTTTTCC Rv2645 2970123 - 2970554 + | hypothetical protein Rv2646 2970551 - 2971549 + | integrase Rv2647 2971659 - 2972027 + | hypothetical protein TERM 1519 2972070 - 2972012 - f 75 -12.4 -3.55444 | gap 2, opp_overlap 2972023, overlap 2972013 CCGGGATGGTTTAAA CGGTTGGAGCGGCTGACCGCCGGTGCCC GGGAT GGGCCCCGGCGG-CAACTTGTCCAA-CG GGCGACGCTCACGTC TERM 1520 2972023 - 2972060 + F 84 -15.5 -3.28712 | gap 1, opp_overlap 2972012 2972013 TAAACGGTTGGAGCG GCTGACCGCCGGTGCCCG GGA TGGGCCCCGGCGG-CAAC TTGTCCAACGGGCGA Rv2648 2972160 - 2972486 + | transposase IS6110 Rv2649 2972435 - 2973421 + | transposase IS6110 Rv2650c 2975234 - 2973795 - | phiRv2 prophage protein TERM 1521 2974700 - 2974644 - G 84 -7.2 -4.72272 | gap 1, overlap 2974613 2974645 2974646 CGCCGGGATCAAAAA CCCGCCGGCGGTGTCCACCAAGC CCATTGCTCGCT GCTCGGCGGCCACCGC-GGCCGC CTCACGCCACGCGGC TERM 1522 2975017 - 2975075 + g 100 -20.1 -3.15544 | gap 1 CTCAGCTCACCGGCC CGGC-AGCGGCGCAGCGCCTCCTCGGCT TCGC GGCCGCGGCGGCGCTGCTCCGCCCGCAG TTCCTCGGCGTGGCG TERM 1523 2975133 - 2975154 + g 73 -10.9 -3.63744 | gap 1, overlap 2975132 ATCACCGGTCAGGTC GC-CCTCGAC GGA GTCGAGGAGC TGTTTTGCCGCGGAA Rv2651c 2975775 - 2975242 - | phiRv2 prophage protease Rv2652c 2976554 - 2975928 - | phiRv2 prophage protein Rv2653c 2976909 - 2976586 - | phiRv2 prophage protein Rv2654c 2977234 - 2976989 - | phiRv2 prophage protein TERM 1524 2977074 - 2977048 - G 77 -5.6 -4.63218 | overlap 2977049 2977050 TCGCGGCGAACAAAA CGGCCGCGACGC CGT GCGACTCCGCCA CAGCGCGGACCAACG Rv2655c 2978658 - 2977231 - | phiRv2 prophage protein TERM 1525 2977487 - 2977473 - G 74 -12.8 -3.53761 | CAACCGGCGGTGAAA CCGCGG AAA CCGCGG AAACCGATAAATCTC Rv2656c 2979052 - 2978660 - | phiRv2 prophage protein Rv2657c 2979309 - 2979049 - | phiRv2 prophage protein Rv2658c 2979688 - 2979326 - | prophage protein Rv2659c 2980818 - 2979691 - | phiRv2 prophage integrase Rv2660c 2981190 - 2980963 - | hypothetical protein Rv2661c 2981576 - 2981187 - | hypothetical protein Rv2662 2981482 - 2981754 + | hypothetical protein Rv2663 2981853 - 2982086 + | hypothetical protein Rv2664 2982097 - 2982351 + | hypothetical protein TERM 1526 2982507 - 2982546 + F 78 -12.2 -3.7795 | gap 1, opp_overlap 2982513 2982515, overlap 2982509 AAATCCCCAGACCCC TACACACAGCGACACGGCG ACC CGCCGTCTC-CTGAGTGTG TTTGCTAAAATTTCG TERM 1527 2982509 - 2982544 + F 76 -12.6 -3.46936 | gap 1, opp_overlap 2982513 2982515, overlap 2982507 ATCCCCAGACCCCTA CACACAGCGACACGGCG ACC CGCCGTCTC-CTGAGTG TGTTTGCTAAAATTT Rv2665 2982699 - 2982980 + | hypothetical protein Rv2666 2983071 - 2983874 + | truncated IS1081 transposase TERM 1528 2983900 - 2983868 - f 71 -11.4 -3.48924 | overlap 2983869 TCACGGTCGACACAA TGCATAACGTCAAC CTACT GTTGACGTCATGCC GGAGCCCACACCCAC TERM 1529 2983899 - 2983869 - f 75 -14.9 -2.6914 | overlap 2983868 CACGGTCGACACAAT GCATAACGTCAAC CTACT GTTGACGTCATGC CGGAGCCCACACCCA clpC2 2983896 - 2984654 + | ATP-dependent protease ATP-binding subunit ClpC2 Rv2668 2984733 - 2985254 + | hypothetical protein Rv2669 2985283 - 2985753 + | hypothetical protein Rv2670c 2986840 - 2985731 - | hypothetical protein ribD 2986839 - 2987615 + | hypothetical protein TERM 1530 2989101 - 2989073 - g 72 -8.8 -4.07568 | overlap 2989095 GCTCGGTGTGCAAAA CGACCCGATCGT GGGCA ACGAAGGGGTCG CCGCGACCGCCGCCA Rv2672 2987682 - 2989268 + | secreted protease TERM 1531 2989433 - 2989453 + G 70 -13.3 -3.01712 | CGGCCGCCGTCCTGT CGGTGCTGC ACC GCAGCATCG TATTGACGACCAACG Rv2673 2989291 - 2990592 + | integral membrane protein Rv2674 2990706 - 2991116 + | hypothetical protein Rv2675c 2991936 - 2991184 - | hypothetical protein Rv2676c 2992628 - 2991933 - | hypothetical protein TERM 1532 2992535 - 2992506 - G 74 -5.1 -4.56597 | CTGCTGTTTGAAAAA CGTGGACGCG-TC GTCGAT GATCGCGT-CACG CTGGTCACCGAGCGC hemY 2993992 - 2992634 - | protoporphyrinogen oxidase TERM 1533 2993090 - 2993069 - G 72 -11.5 -3.57615 | overlap 2993070 GGAACAGTGCGGAAA CGCGGTGCC GCCG GGCACCGCC AGCGCCACCACCGCC TERM 1534 2993089 - 2993070 - G 72 -15 -2.74248 | overlap 2993069 GAACAGTGCGGAAAC GCGGTGCC GCCG GGCACCGC CAGCGCCACCACCGC hemE 2995062 - 2993989 - | uroporphyrinogen decarboxylase TERM 1535 2995907 - 2995897 - g 72 -8.2 -4.11216 | CGCGCACCGCGAAAA GCGC CCC GCGC GGTTCGGCGCCGACC echA15 2995115 - 2995945 + | enoyl-CoA hydratase Rv2680 2996105 - 2996737 + | hypothetical protein TERM 1536 2997816 - 2997771 - g 85 -15.4 -3.70902 | TGGGTCAGACGGAAA CCGGCAGCCGCCGCACG-GCTG GATG CGGCGCGCGCGGCG-CTGACGG AGGTGTCGCAACGGG Rv2681 2996739 - 2998055 + | hypothetical protein dxs1 2999968 - 2998052 - | 1-deoxy-D-xylulose-5-phosphate synthase TERM 1537 2999188 - 2999168 - G 79 -16.1 -3.05596 | CACCGGTGCACCGAA GCGCCGCGC GCT GCGCAGCGC GACCTCCACCGCCCG TERM 1538 2999431 - 2999450 + g 72 -11.4 -3.50853 | CGACGCCCCCGATTG TGGGCGCG TAGC TGCGCCCA TTGTCGTTGACCACG Rv2683 3000112 - 3000609 + | hypothetical protein TERM 1539 3001429 - 3001453 + G 76 -6.3 -4.57073 | ATCCGAGTATCTATC CAGCGTCGAGT GGG ACACGCTGCTG TTTTTCGCCGGGCTG arsA 3000614 - 3001903 + | arsenic-transport integral membrane protein ArsA arsB1 3001983 - 3003269 + | arsenic-transport integral membrane protein ArsB1 Rv2686c 3004038 - 3003280 - | antibiotic ABC transporter transmembrane protein TERM 1540 3003747 - 3003703 - G 71 -2.7 -4.65168 | gap 1, overlap 3003706 ACGATAGCCGAAAAA GAC-CGACAGCGGCACCGGG GTTACT CGCAGCGCCGTCATCGTGCC CGCGTCTACGTCGTC Rv2687c 3004748 - 3004035 - | antibiotic ABC transporter transmembrane protein Rv2688c 3005650 - 3004745 - | antibiotic ABC transporter ATP-binding protein Rv2689c 3007062 - 3005845 - | hypothetical protein Rv2690c 3009209 - 3007236 - | hypothetical protein ceoB 3009344 - 3010027 + | TRK system potassium uptake protein CEOB ceoC 3010024 - 3010686 + | TRK system potassium uptake protein CEOC Rv2693c 3011368 - 3010697 - | integral membrane alanine and leucine rich protein TERM 1541 3010934 - 3010918 - G 74 -2.1 -4.7254 | overlap 3010922 ACCGGGCAGCAAAAA CCAGCGT CCA ACCCAGG GTGGCGACGTCAAAC TERM 1542 3011001 - 3010955 - G 71 -9.3 -3.85165 | overlap 3010959 3010960 GACGTCAAACGCAAA GACAGCGCGGGACACG-TCGCGC CAG GCGCGATCGCG-CCCGCTGAGCC AGCTCCACAAGTAGC TERM 1543 3011297 - 3011280 - G 71 -2.7 -4.58213 | overlap 3011281 GAAGCAACCACAAAA GTCACCA CCGG TAATGAC GAATAGACCAGGCCG Rv2694c 3011767 - 3011399 - | hypothetical protein Rv2695 3011916 - 3012623 + | hypothetical protein Rv2696c 3013608 - 3012829 - | hypothetical protein TERM 1544 3013520 - 3013564 + g 71 -12.8 -3.27525 | gap 1, overlap 3013516 ACCACGGTGTCCTCC GGTCGGACGTGCTCGTCGGCC GGCT GGACGG-GGGCGTGTCCGGCC TTGCGTTTGCCACCG dut 3014147 - 3013683 - | deoxyuridine 5'-triphosphate nucleotidohydrolase TERM 1545 3014294 - 3014332 + G 78 -10.3 -4.11216 | gap 1 TTGAAGTAAACCTGG GCGTTGCG-GCCCTACCC GACT GGGTACCGTTCGCAACGC TTTTCACAGTCGCAG Rv2698 3014173 - 3014658 + | alanine rich transmembrane protein Rv2699c 3014965 - 3014663 - | hypothetical protein Rv2700 3015203 - 3015853 + | secreted alanine rich protein suhB 3016735 - 3015863 - | extragenic suppressor protein SuhB ppgK 3016858 - 3017655 + | polyphosphate glucokinase PPGK (polyphosphate-glucose phosphotransferase) sigA 3017835 - 3019421 + | RNA polymerase sigma factor Rv2705c 3020203 - 3019814 - | hypothetical protein Rv2704 3019458 - 3019886 + | hypothetical protein Rv2706c 3020457 - 3020200 - | hypothetical protein TERM 1546 3020416 - 3020428 + g 72 -5.5 -4.3739 | opp_overlap 3020364, overlap 3020383 GCCAAGCTGCCCTCC GGAGC CGA GCTTC TTTTCTGCCAGCATC Rv2707 3020573 - 3021547 + | hypothetical protein Rv2708c 3021796 - 3021548 - | hypothetical protein TERM 1547 3021735 - 3021762 + g 71 -14.8 -2.55722 | overlap 3021734 3021731 GTGTCGCTGCCGGTC CCGTCGTCGACG CGTT CGTCGGCGTCGG TACGTTCAATCGTCT Rv2709 3021839 - 3022285 + | transmembrane protein sigB 3022461 - 3023432 + | RNA polymerase sigma factor SigB TERM 1548 3023461 - 3023518 + F 100 -17.1 -4.09685 | gap 3, opp_overlap 3023461, overlap 3023462 GAGCCAGGTAGCAGA CGGTATGCCCGCCGCGCCA--GCGGCGG GCATA CCGCTGCGGTGGGGCGGCGGGCA-ACCA TTTTCGCAGCTGGCC TERM 1549 3023494 - 3023461 - f 100 -28.3 -2.81133 | opp_overlap 3023461 3023462 GAGCCAGGTAGCAGA CGGTATGCCCGCCGC GCCA GCGGCGGGCATACCG CTGCGGTGGGGCGGC TERM 1550 3023462 - 3023517 + F 93 -20.6 -3.05597 | gap 3, opp_overlap 3023461, overlap 3023461 AGCCAGGTAGCAGAC GGTATGCCCGCCGCGCCA--GCGGCGG GCATA CCGCTGCGGTGGGGCGGCGGGCA-ACC ATTTTCGCAGCTGGC ideR 3023565 - 3024257 + | IRON-dependent repressor and activator IDER Rv2712c 3025328 - 3024270 - | hypothetical protein sthA 3025441 - 3026847 + | soluble pyridine nucleotide transhydrogenase TERM 1551 3026933 - 3026902 - f 78 -12.2 -3.72695 | overlap 3026920 AGGCTTGCCAGCAAA TTCGCCGCCGCCCA CGAA CGGTCGGCGTCGAA CGTGGCCCCGCGCTT Rv2714 3027065 - 3028039 + | hypothetical protein TERM 1552 3028195 - 3028215 + G 70 -11.1 -3.56325 | overlap 3028192 GGCGGGCATTCCGGA TCGCCGGTT CCG GGCCGGCGA TTCTGCTTATCCACG Rv2715 3028098 - 3029123 + | hydrolase Rv2716 3029172 - 3029858 + | hypothetical protein Rv2717c 3030361 - 3029867 - | hypothetical protein Rv2718c 3030877 - 3030413 - | transcriptional regulator NrdR TERM 1553 3030501 - 3030488 - G 70 -2.3 -4.63218 | overlap 3030491 GTCCGCGGAAGAAAA CGACC GGTA GACCG ACGCGAACCGTAGGT Rv2719c 3031537 - 3031040 - | hypothetical protein TERM 1554 3031352 - 3031320 - G 73 -14.7 -2.90075 | overlap 3031304 GCCGCGGCAAGCAGA GCCAGCCCCACCGTC GTG GCCGGCGGGACGGGC CTGCTGCCATGCCCA TERM 1555 3032340 - 3032321 - g 70 -11.4 -3.46602 | opp_overlap 3032321, overlap 3032322 3032333 3032334 GGTGCGACAGCAGAA CGTCGCCG ACAA CGGCGACA TCGTTGCGGCCATGA lexA 3031845 - 3032498 + | LexA repressor Rv2721c 3034619 - 3032520 - | hypothetical protein TERM 1556 3034557 - 3034539 - G 78 -16 -3.14132 | CGTGGGCGCCAGCAA CACGGCGG TCA CCGCCGTG GCCGCCAAGCCGAGC Rv2722 3034635 - 3034883 + | hypothetical protein Rv2723 3034909 - 3036102 + | integral membrane protein fadE20 3037291 - 3036131 - | acyl-CoA dehydrogenase FADE20 hflX 3038914 - 3037427 - | GTP-binding protein HflX dapF 3039800 - 3038931 - | diaminopimelate epimerase miaA 3040769 - 3039825 - | tRNA delta(2)-isopentenylpyrophosphate transferase TERM 1557 3040514 - 3040552 + g 77 -12.2 -3.65902 | CGATCGCCTCGATGT CCGCCGCGGCGGCCCGCT GGT AGCGCGCCACGGTCGCGG TTTCGGTGACATCCA Rv2728c 3041461 - 3040766 - | hypothetical protein TERM 1558 3041375 - 3041348 - G 74 -12.6 -3.61398 | GCTTTTCGGCAACAA GGAGGCCGCCGC GATC ACCGCGGCCCCC AAATCGGCCAGCTCG Rv2729c 3042475 - 3041570 - | hypothetical protein TERM 1559 3042604 - 3042581 - g 77 -3.6 -4.83722 | opp_overlap 3042585, overlap 3042573 3042571 AATATCACAACAAAA CGTTGCGCGC AGAC GCGTGCTTCG TCATCGGCTTCGGAA Rv2730 3042542 - 3043018 + | hypothetical protein Rv2731 3043026 - 3044378 + | hypothetical protein Rv2732c 3044989 - 3044375 - | transmembrane protein Rv2733c 3046524 - 3044986 - | hypothetical protein TERM 1560 3046166 - 3046200 + g 79 -7.6 -4.56597 | overlap 3046168 3046193 CCGAAGACAACGTCT ACCCACGGCGCCCTGC GCA GCACGGCGTCGCGGTC TTTTTGCGCCAGGCA TERM 1561 3046168 - 3046198 + g 88 -14.6 -3.90048 | overlap 3046166 3046193 GAAGACAACGTCTAC CCACGGCGCCCTGC GCA GCACGGCGTCGCGG TCTTTTTGCGCCAGG TERM 1562 3047014 - 3046966 - gR 74 -9 -3.86944 | gap 2, opp_overlap 3046986, overlap 3046967 3046970 CCGACAAGTATCAAA CCGATGGTGACCCCAGAACCTCCG GTC CGG-GATT-TGGCGTCACCATCCA TCCCCGCAGTCTTGA Rv2735c 3048552 - 3047560 - | hypothetical protein Rv2734 3046821 - 3047675 + | hypothetical protein TERM 1563 3048490 - 3048516 + gT 72 -4.4 -4.44046 | overlap 3048492 AGCCCTGTTGAAGGC CGGGAGGTAC CCGGCAA GTATCTCCAG TTTGTTTCGCGTCCA recX 3049086 - 3048562 - | recombination regulator RecX TERM 1564 3049014 - 3049042 + gTr 100 -20.3 -3.04144 | GGGATCGCGCGGTGA GCAGGCGCAGGCA CAG TGCCCGCGCCTGC TCTTCGCGCTCAGAA recA 3051424 - 3049052 - | recombinase A TERM 1565 3051349 - 3051313 - GH 100 -19.6 -3.71527 | gap 1, opp_overlap 3051311 3051310 TCGGAATGACCGAAA TCGGCTGACGCGCCTCG TCGC CGAGGCGCATCA-CCGA ACCTTTGCCGTAACT Rv2737A 3051619 - 3051792 + | hypothetical protein Rv2738c 3052012 - 3051806 - | hypothetical protein Rv2739c 3053189 - 3052023 - | alanine rich transferase TERM 1566 3052175 - 3052131 - G 80 -15 -3.40403 | gap 1, overlap 3052134 CCTCGGCGACGACAA CACCTCGTTGACCGCCGCCAC CAGC GCGTCGGCGGTCAACG-GCCG GATCAGCACCGCGCT TERM 1567 3052172 - 3052134 - G 80 -17.5 -2.56271 | gap 1, overlap 3052131 CGGCGACGACAACAC CTCGTTGACCGCCGCCAC CAGC GCGTCGGCGGTCAACG-G CCGGATCAGCACCGC Rv2740 3053233 - 3053682 + | hypothetical protein TERM 1568 3054891 - 3054937 + G 100 -21.4 -3.05844 | GCACGGTGGCTTCGG CAGTGCTGCCGGCGGCGACGGC GGC GCGGGCGGCGCCGGCGGCACGG TCTTCGGCTCGGGCG PE_PGRS47 3053914 - 3055491 + | PE-PGRS family protein Rv2742c 3056348 - 3055515 - | hypothetical protein TERM 1569 3055686 - 3055671 - G 73 -6 -4.33105 | overlap 3055673 CAACCAGCACCAAAA GCCCGG TACG CCGCGC CGAATCGCGGGCTGA Rv2743c 3057232 - 3056420 - | hypothetical protein TERM 1570 3056845 - 3056810 - G 77 -11 -3.84639 | gap 1, overlap 3056800 CAACAGCGAGAAGAA CCCGCGTTCGGAGGCGC CCA GCGCCGAC-ATCGCGGG TCGCGCGGCCGAGCC 35kd_ag 3058063 - 3057251 - | hypothetical protein Rv2745c 3058531 - 3058193 - | transcriptional regulatory protein pgsA3 3059231 - 3058602 - | CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase Rv2747 3059262 - 3059786 + | N-acetylglutamate synthase TERM 1571 3059800 - 3059841 + TF 100 -24.1 -2.78463 | gap 1, opp_overlap 3059800 3059807, overlap 3059807 AGCCCGGCGAGCAGA CGCAAAATCGCCTCATTTCG GCA CGAAATG-GGCGATTTTGCG TCTGCTCGGCGGGCT TERM 1572 3059841 - 3059800 - Tf 100 -24.1 -2.78463 | gap 1, opp_overlap 3059800 3059807, overlap 3059807 AGCCCGGCGAGCAGA CGCAAAATCGCCTCATTTCG GCA CGAAATG-GGCGATTTTGCG TCTGCTCGGCGGGCT TERM 1573 3059834 - 3059807 - Tf 100 -13.6 -4.24948 | gap 1, opp_overlap 3059807 3059800, overlap 3059800 CGAGCAGACGCAAAA TCGCCTCATTTCG GCA CGAAATG-GGCGA TTTTGCGTCTGCTCG TERM 1574 3059807 - 3059834 + TF 100 -13.6 -4.24948 | gap 1, opp_overlap 3059800 3059807, overlap 3059800 CGAGCAGACGCAAAA TCGCCTCATTTCG GCA CGAAATG-GGCGA TTTTGCGTCTGCTCG ftsK 3062506 - 3059855 - | cell division transmembrane protein FtsK Rv2749 3062505 - 3062819 + | hypothetical protein Rv2750 3062816 - 3063634 + | 3-ketoacyl-(acyl-carrier-protein) reductase TERM 1575 3063731 - 3063703 - g 70 -6.6 -4.25104 | gap 1, overlap 3063707 GGCCGTGGAGCAAAA CGAACCACCTGGC CGCC GCCTGGTGGA-CG ACGACCTCGCGGACT TERM 1576 3063728 - 3063707 - g 75 -11.5 -3.71672 | overlap 3063703 GTGGAGCAAAACGAA CCACCTGGC CGCC GCCTGGTGG ACGACGACCTCGCGG Rv2751 3063638 - 3064528 + | hypothetical protein Rv2752c 3066191 - 3064515 - | hypothetical protein TERM 1577 3064807 - 3064793 - G 70 -3.5 -4.4648 | overlap 3064796 AGCCCGACGACAAAA TGAGC CGCTC GCCCA GGGTGATATCGCCGA dapA 3067124 - 3066222 - | dihydrodipicolinate synthase thyX 3067945 - 3067193 - | FAD-dependent thymidylate synthase hsdS.1 3068464 - 3068189 - | type I restriction/modification system specificity determinant HsdS hsdM 3070083 - 3068461 - | type I restriction/modification system DNA methylase HsdM Rv2757c 3070586 - 3070170 - | hypothetical protein Rv2758c 3070849 - 3070583 - | hypothetical protein Rv2759c 3071270 - 3070875 - | hypothetical protein Rv2760c 3071536 - 3071267 - | hypothetical protein hsdS 3072640 - 3071546 - | type I restriction/modification system specificity determinant HsdS Rv2762c 3073056 - 3072637 - | hypothetical protein dfrA 3073609 - 3073130 - | dihydrofolate reductase DFRA (DHFR) (tetrahydrofolate dehydrogenase) thyA 3074471 - 3073680 - | thymidylate synthase TERM 1578 3074708 - 3074724 + G 73 -15.1 -2.8789 | TTCACTCCCGATGGT CCGGGCC GCT GGCCCGG TGTGGTGATGTTTCC Rv2765 3074636 - 3075373 + | hypothetical protein TERM 1579 3075386 - 3075431 + T 100 -22.1 -2.71011 | opp_overlap 3075386 3075388 3075395, overlap 3075388 3075395 TAGCCCCGCCAAGCA GACGCAGAATCGCATTAATCG CGCC CGGTTTGTGCGATTCTGCGTC TGCTTGGCAGCACCT TERM 1580 3075431 - 3075386 - T 86 -17.7 -2.71144 | opp_overlap 3075386 3075388 3075395, overlap 3075388 3075395 TAGCCCCGCCAAGCA GACGCAGAATCGCATTAATCG CGCC CGGTTTGTGCGATTCTGCGTC TGCTTGGCAGCACCT TERM 1581 3075388 - 3075429 + T 91 -18.9 -2.90075 | opp_overlap 3075386 3075388 3075395, overlap 3075386 3075395 GCCCCGCCAAGCAGA CGCAGAATCGCATTAATCG CGCC CGGTTTGTGCGATTCTGCG TCTGCTTGGCAGCAC TERM 1582 3075429 - 3075388 - T 77 -14.5 -2.90075 | opp_overlap 3075388 3075386 3075395, overlap 3075386 3075395 GCCCCGCCAAGCAGA CGCAGAATCGCATTAATCG CGCC CGGTTTGTGCGATTCTGCG TCTGCTTGGCAGCAC fabG 3076370 - 3075588 - | 3-ketoacyl-(acyl-carrier-protein) reductase Rv2767c 3076720 - 3076367 - | hypothetical protein PPE43 3078078 - 3076894 - | PPE family protein TERM 1583 3077217 - 3077195 - G 77 -13.4 -3.53091 | opp_overlap 3077206 ACCGTGTGCGCCAAA CCAGCTGCTG CCG CGGCAGCTGG AACGGCATCGGCGGC PE27 3078985 - 3078158 - | PE family protein TERM 1584 3079248 - 3079289 + r 70 -10.2 -3.54436 | gap 3, overlap 3079259 GCCGCGGGAGGGTTA GCGCAATGTGGCCG--CGGCG GCG CGCTGGTCGGCCGCGT-GCGC TTGTCTCGGTGTCTC PPE44 3080457 - 3079309 - | PPE family protein Rv2771c 3081033 - 3080581 - | hypothetical protein Rv2772c 3081592 - 3081119 - | transmembrane protein dapB 3082341 - 3081604 - | dihydrodipicolinate reductase Rv2774c 3082756 - 3082352 - | hypothetical protein Rv2775 3082909 - 3083370 + | hypothetical protein Rv2776c 3084303 - 3083374 - | oxidoreductase Rv2777c 3085555 - 3084485 - | hypothetical protein Rv2778c 3086183 - 3085713 - | hypothetical protein TERM 1585 3085967 - 3085998 + g 83 -9.4 -4.4078 | gap 1 GATCGGCGTCGGTAA CGGTGCACGTCG-TG GTC CAGCGCCGTCCACCG TTTTCGTTGCGACCG Rv2779c 3086754 - 3086215 - | LRP/AsnC family transcriptional regulator TERM 1586 3086968 - 3087025 + G 91 -12.8 -4.2461 | gap 3, overlap 3086971 3086973 TCACCGACGCGGATT TCAAGGCGGCAGGCGCGCAACTGGTCGGC ACC GCCGACCAGGTGTGGGCC-GACG-CT-GA TTTATTGCTCAAGGT TERM 1587 3086971 - 3087024 + G 78 -15.9 -3.14284 | gap 1, overlap 3086968 3086973 CCGACGCGGATTTCA AGGCGGCAGGCGCGCAACTGGTCGGC ACC GCCGACCAGGTGTGGGCC-GACGCTG ATTTATTGCTCAAGG TERM 1588 3086973 - 3087022 + G 100 -20.7 -3.12942 | gap 1, overlap 3086971 3086968 GACGCGGATTTCAAG GCGGCAGGCGCGCAACTGGTCGGC ACC GCCGACCAGGTGTGGGCC-GACGC TGATTTATTGCTCAA ald 3086820 - 3087935 + | secreted L-alanine dehydrogenase ALD (40 kDa antigen) (TB43) Rv2781c 3088984 - 3087950 - | alanine rich oxidoreductase TERM 1589 3088924 - 3088875 - G 95 -18.5 -3.72576 | CCGCCGGCGACGAAA CCAAGCCCGCCAGCGTTGGACAC CGCC GCGGCCAACGCCGGGGTGCTCGG GCCGCCGGCCATCGG pepR 3090361 - 3089045 - | zinc protease PEPR gpsI 3092597 - 3090339 - | polynucleotide phosphorylase/polyadenylase TERM 1590 3091583 - 3091596 + g 77 -3.8 -4.72272 | GGTCGGTGAGGATGC GCTG CCGAAC CAGC TTTTTGGTCAGGGCA lppU 3093466 - 3092951 - | lipoprotein LppU rpsO 3093748 - 3093479 - | 30S ribosomal protein S15 ribF 3094900 - 3093905 - | bifunctional riboflavin kinase/FMN adenylyltransferase Rv2787 3095111 - 3096874 + | hypothetical protein sirR 3096959 - 3097645 + | transcriptional repressor SIRR fadE21 3098938 - 3097706 - | acyl-CoA dehydrogenase FADE21 ltp1 3100169 - 3098964 - | lipid-transfer protein TERM 1591 3100216 - 3100228 + r 70 -10.5 -3.61894 | GTCACGCGACTTGCA CCCCG TCT CGGGG TTGTTCGGCAGCCTT Rv2791c 3101581 - 3100202 - | transposase TERM 1592 3100564 - 3100613 + g 77 -15.7 -3.01924 | gap 2 GGCGCGGGGTGCCCA GGGCCGCGTCGGAGAGTCCGCGC CGGCGA GCGCGGGCAC-CCGA-GAGGCCC TGTTGCCGCAGCATC Rv2792c 3102162 - 3101581 - | resolvase truB 3103260 - 3102364 - | tRNA pseudouridine synthase B Rv2794c 3103940 - 3103257 - | hypothetical protein Rv2795c 3104911 - 3103937 - | hypothetical protein TERM 1593 3105029 - 3104988 - R 100 -30.5 -2.78596 | opp_overlap 3104988 3104995, overlap 3104995 TACGGCGTGAGCAGA CGCAAAAGCCCCCATTTCG GGCC CGAAATGGGGGCTTTTGCG TCTGCTCGGCCAACC TERM 1594 3104988 - 3105029 + r 100 -30.5 -2.78384 | opp_overlap 3104988 3104995, overlap 3104995 TACGGCGTGAGCAGA CGCAAAAGCCCCCATTTCG GGCC CGAAATGGGGGCTTTTGCG TCTGCTCGGCCAACC TERM 1595 3105022 - 3104995 - R 100 -20 -4.24948 | opp_overlap 3104988 3104995, overlap 3104988 TGAGCAGACGCAAAA GCCCCCATTTCG GGCC CGAAATGGGGGC TTTTGCGTCTGCTCG TERM 1596 3104995 - 3105022 + r 100 -20 -4.24948 | opp_overlap 3104995 3104988, overlap 3104988 TGAGCAGACGCAAAA GCCCCCATTTCG GGCC CGAAATGGGGGC TTTTGCGTCTGCTCG lppV 3105619 - 3105056 - | lipoprotein LppV Rv2797c 3107307 - 3105619 - | hypothetical protein TERM 1597 3105715 - 3105736 + g 73 -12.9 -3.28924 | opp_overlap 3105687 CGTGTTGTCGGGCAG CCCGGCGGC GATC GCCGCCAGG TTATAGCCGGACATC TERM 1598 3107076 - 3107134 + g 87 -17.2 -3.46602 | opp_overlap 3107053 3107052, overlap 3107062 CGGCCCTGTCGGCCG CCCGGGCAACCGCCAACGCCTCGTTGCC GTG GGCGTCGAGGTCTCGGCGAATGCCCGCG TTGTGGTGTGCCGCC Rv2798c 3107637 - 3107311 - | hypothetical protein Rv2799 3107768 - 3108397 + | hypothetical protein Rv2800 3108416 - 3110065 + | hydrolase Rv2801c 3110523 - 3110167 - | hypothetical protein TERM 1599 3110654 - 3110677 + rH 73 -11 -3.64103 | overlap 3110655 3110657 ATGCTGCAGGCCGGC GGAGCGGGAT GGTA ATCCCGCTCG TTTCACATATGCGTC TERM 1600 3110655 - 3110676 + rH 75 -14.5 -2.7814 | overlap 3110654 3110657 TGCTGCAGGCCGGCG GAGCGGGAT GGTA ATCCCGCTC GTTTCACATATGCGT Rv2802c 3111823 - 3110780 - | hypothetical protein Rv2803 3111822 - 3112289 + | hypothetical protein Rv2804c 3113094 - 3112465 - | hypothetical protein Rv2805 3112867 - 3113271 + | hypothetical protein Rv2806 3113268 - 3113459 + | hypothetical protein Rv2807 3113658 - 3114812 + | hypothetical protein Rv2808 3115046 - 3115303 + | hypothetical protein Rv2809 3115408 - 3115719 + | hypothetical protein Rv2810c 3116142 - 3115741 - | transposase TERM 1601 3115897 - 3115941 + gF 73 -11.4 -3.58037 | gap 1, opp_overlap 3115900 3115910, overlap 3115898 3115900 CGCGTGGTGGTCGAA GTAGGCCAGCACATCGTGGCG GCAG CGCCACAGGGTGC-GGCCTAG TTTGGCCAGTTCCTC TERM 1602 3115898 - 3115940 + gF 75 -14.9 -2.74501 | gap 1, opp_overlap 3115900 3115910, overlap 3115897 3115900 GCGTGGTGGTCGAAG TAGGCCAGCACATCGTGGCG GCAG CGCCACAGGGTGC-GGCCTA GTTTGGCCAGTTCCT TERM 1603 3115900 - 3115938 + gF 70 -13.1 -2.9162 | gap 1, opp_overlap 3115900 3115910, overlap 3115898 3115897 GTGGTGGTCGAAGTA GGCCAGCACATCGTGGCG GCAG CGCCACAGGGTGC-GGCC TAGTTTGGCCAGTTC TERM 1604 3115999 - 3116021 + gF 70 -2.5 -4.63952 | overlap 3116001 GCTGACGGTGAGCAG CGCGGGGGC TTGCC GTACCCGGG TTTGTTGTTTGTAGT TERM 1605 3116072 - 3116118 + gF 87 -17.3 -2.91681 | gap 1, overlap 3116071 3116069 AGGTCATTGGTAGGC GACGGCCCTCCCGTCGT-CTCT TGCC GGAGTGCTACGGGAGGGCCGCC TGTGTGCGCTTGGAG Rv2811 3116139 - 3116747 + | hypothetical protein TERM 1606 3117239 - 3117271 + G 70 -13.4 -3.03159 | gap 1 TCCACCGGCTCGGGC TCACCGGCGCC-ACC ACCG GGTCGGCGCCGGCGG TGTTCGGCCGGTTCG Rv2812 3116818 - 3118227 + | transposase TERM 1607 3118242 - 3118252 + G 71 -3.2 -4.58395 | ATGCACAAACTGATC TCGT ATT ACGG TTTTTCGCGCATGCC TERM 1608 3118637 - 3118584 - g 78 -14.3 -3.62046 | CTAGCCGCCGAACAA GCCGAGCGCGGACGCACCCCCGTCG TGGT CGTCGAGGAAGCGCACCTGCTCGGC TATGACCAACTGGAG Rv2813 3118224 - 3119036 + | hypothetical protein TERM 1609 3119095 - 3119063 - T 75 -14.8 -2.74701 | opp_overlap 3119064 3119065 3119067, overlap 3119060 ACACCCCGAACACCA CCGACCCCGCCGGA CATCT CCCGGCGGGGTCAT TTCATGACCAAACGT TERM 1610 3119064 - 3119094 + T 90 -15.4 -3.72576 | opp_overlap 3119063 3119060, overlap 3119065 3119067 CACCCCGAACACCAC CGACCCCGCCGG ACATCTC CCGGCGGGGTCA TTTCATGACCAAACG TERM 1611 3119065 - 3119093 + T 91 -18.9 -2.83403 | opp_overlap 3119063 3119060, overlap 3119064 3119067 ACCCCGAACACCACC GACCCCGCCGG ACATCTC CCGGCGGGGTC ATTTCATGACCAAAC TERM 1612 3119067 - 3119091 + T 79 -15.7 -2.96695 | opp_overlap 3119063 3119060, overlap 3119065 3119064 CCCGAACACCACCGA CCCCGCCGG ACATCTC CCGGCGGGG TCATTTCATGACCAA TERM 1613 3119193 - 3119204 + T 72 -7.2 -4.2349 | CGTCGTAGTTTCCGT CCCC TCTC GGGG TTTTGGGTCTGACGA TERM 1614 3119343 - 3119354 + T 72 -7.2 -4.2349 | GCGGTGTGTTTCCGT CCCC TCTC GGGG TTTTGGGTCTGAGGA TERM 1615 3119419 - 3119430 + T 72 -7.2 -4.2349 | GATATGCGTTTCCGT CCCC TCTC GGGG TTTTGGGTCTGACGA TERM 1616 3119492 - 3119503 + T 72 -7.2 -4.18018 | GCGTCCAGTTTCCGT CCCC TCTC GGGG TTTTGGGTCCGACGA TERM 1617 3119564 - 3119575 + T 72 -7.2 -4.2349 | CATGAGGGTTTCCGT CCCC TCTC GGGG TTTTGGGTCTGACGA TERM 1618 3119635 - 3119646 + T 72 -7.2 -4.2349 | CCGTCAGGTTTCCGT CCCC TCTC GGGG TTTTGGGTCTGACGA TERM 1619 3119709 - 3119720 + T 72 -7.2 -4.2349 | CGTACTAGTTTCCGT CCCC TCTC GGGG TTTTGGGTCTGACGA TERM 1620 3119785 - 3119796 + T 72 -7.2 -4.2349 | TCGTCGGGTTTCCGT CCCC TCTC GGGG TTTTGGGTCTGACGA TERM 1621 3119856 - 3119867 + T 72 -7.2 -4.2349 | ACGGGGCGTTTCCGT CCCC TCTC GGGG TTTTGGGTCTGACGA TERM 1622 3119929 - 3119940 + T 72 -7.2 -4.2349 | TCAAAATGTTTCCGT CCCC TCTC GGGG TTTTGGGTCTGACGA TERM 1623 3120003 - 3120014 + T 72 -7.2 -4.2349 | TGATAAAGTTTCCGT CCCC TCTC GGGG TTTTGGGTCTGACGA TERM 1624 3120076 - 3120087 + T 72 -7.2 -4.2349 | CGAACCTGTTTCCGT CCCC TCTC GGGG TTTTGGGTCTGACGA TERM 1625 3120149 - 3120160 + T 72 -7.2 -4.2349 | GTCAAGAGTTTCCGT CCCC TCTC GGGG TTTTGGGTCTGACGA TERM 1626 3120221 - 3120232 + T 72 -7.2 -4.2349 | TTCGCTGGTTTCCGT CCCC TCTC GGGG TTTTGGGTCTGACGA TERM 1627 3120293 - 3120304 + T 72 -7.2 -4.2349 | CGGGGCAGTTTCCGT CCCC TCTC GGGG TTTTGGGTCTGACGA TERM 1628 3120367 - 3120378 + T 72 -7.2 -4.2349 | TCGAAGGGTTTCCGT CCCC TCTC GGGG TTTTGGGTCTGACGA TERM 1629 3120441 - 3120452 + T 72 -7.2 -4.2349 | GCTGAAGGTTTCCGT CCCC TCTC GGGG TTTTGGGTCTGACGA Rv2814c 3121504 - 3120566 - | transposase Rv2815c 3121827 - 3121501 - | transposase TERM 1630 3121946 - 3121957 + r 72 -7.2 -4.2349 | AGGTTGGGTTTCCGT CCCC TCTC GGGG TTTTGGGTCTGACGA TERM 1631 3122021 - 3122032 + r 72 -7.2 -4.2349 | GCTGAGGGTTTCCGT CCCC TCTC GGGG TTTTGGGTCTGACGA TERM 1632 3122094 - 3122105 + r 72 -7.2 -4.2349 | GCTCCAAGTTTCCGT CCCC TCTC GGGG TTTTGGGTCTGACGA TERM 1633 3122166 - 3122177 + r 72 -7.2 -4.2349 | CAATCCAGTTTCCGT CCCC TCTC GGGG TTTTGGGTCTGACGA TERM 1634 3122238 - 3122249 + r 72 -7.2 -4.2349 | CCATGCGGTTTCCGT CCCC TCTC GGGG TTTTGGGTCTGACGA TERM 1635 3122311 - 3122322 + r 72 -7.2 -4.2349 | TTGCCGGGTTTCCGT CCCC TCTC GGGG TTTTGGGTCTGACGA TERM 1636 3122383 - 3122394 + r 76 -7.2 -4.24948 | TGCGAATGTTTCCGT CCCC TCTC GGGG TTTTGGGTCTGATCC TERM 1637 3122444 - 3122455 + r 72 -7.2 -4.2349 | ATTCAAGGTTTCCGT CCCC TCTC GGGG TTTTGGGTCTGACGA TERM 1638 3122521 - 3122532 + r 72 -7.2 -4.2349 | GGCGCAAGTTTCCGT CCCC TCTC GGGG TTTTGGGTCTGACGA TERM 1639 3122593 - 3122604 + r 72 -7.2 -4.2349 | CGACGAAGTTTCCGT CCCC TCTC GGGG TTTTGGGTCTGACGA TERM 1640 3122669 - 3122680 + r 72 -7.2 -4.2349 | ATCCCATGTTTCCGT CCCC TCTC GGGG TTTTGGGTCTGACGA TERM 1641 3122746 - 3122757 + r 72 -7.2 -4.2349 | TCACCTGGTTTCCGT CCCC TCTC GGGG TTTTGGGTCTGACGA TERM 1642 3122819 - 3122830 + r 72 -7.2 -4.2349 | CTGCCCGGTTTCCGT CCCC TCTC GGGG TTTTGGGTCTGACGA TERM 1643 3122890 - 3122901 + r 72 -7.2 -4.2349 | TCCGAGTGTTTCCGT CCCC TCTC GGGG TTTTGGGTCTGACGA TERM 1644 3122963 - 3122974 + r 72 -7.2 -4.2349 | TTCACGCGTTTCCGT CCCC TCTC GGGG TTTTGGGTCTGACGA TERM 1645 3123037 - 3123048 + r 72 -7.2 -4.2349 | TCCTCAGGTTTCCGT CCCC TCTC GGGG TTTTGGGTCTGACGA TERM 1646 3123110 - 3123121 + r 72 -7.2 -4.2349 | CATTGGTGTTTCCGT CCCC TCTC GGGG TTTTGGGTCTGACGA TERM 1647 3123181 - 3123192 + r 72 -7.2 -4.2349 | opp_overlap 3123161 CAGAAAAGTTTCCGT CCCC TCTC GGGG TTTTGGGTCTGACGA TERM 1648 3123256 - 3123267 + r 72 -7.2 -4.2349 | AGGTGTTGTTTCCGT CCCC TCTC GGGG TTTTGGGTCTGACGA TERM 1649 3123326 - 3123337 + r 72 -7.2 -4.2349 | CTTGCGAGTTTCCGT CCCC TCTC GGGG TTTTGGGTCTGACGA TERM 1650 3123398 - 3123409 + r 72 -7.2 -4.2349 | GCAAAAAGTTTCCGT CCCC TCTC GGGG TTTTGGGTCTGACGA TERM 1651 3123475 - 3123486 + r 72 -7.2 -4.2349 | CTCTATGGTTTCCGT CCCC TCTC GGGG TTTTGGGTCTGACGA TERM 1652 3123514 - 3123534 + r 89 -11.1 -4.36595 | opp_overlap 3123513 3123512 CGACGTGCAAGAATT CCGGGTTGC AGT GCAACACGG TTTTAAGTTTCCGTC TERM 1653 3123549 - 3123560 + r 72 -7.2 -4.2349 | GTTTTAAGTTTCCGT CCCC TCTC GGGG TTTTGGGTCTGACGA Rv2816c 3123966 - 3123625 - | hypothetical protein Rv2817c 3124983 - 3123967 - | hypothetical protein Rv2818c 3126144 - 3124996 - | hypothetical protein Rv2819c 3127367 - 3126240 - | hypothetical protein Rv2820c 3128272 - 3127364 - | hypothetical protein TERM 1654 3127825 - 3127859 + g 77 -10.6 -3.81339 | opp_overlap 3127832, overlap 3127829 3127831 3127832 CGTCCAGCTCGAACC GGAAGTAGCCGACACG GTA CGGGTCGGCGTCTTTC TTTCCGTTGTGGATC TERM 1655 3127829 - 3127855 + g 79 -7.8 -4.51765 | opp_overlap 3127832, overlap 3127825 3127831 3127832 CAGCTCGAACCGGAA GTAGCCGACACG GTA CGGGTCGGCGTC TTTCTTTCCGTTGTG TERM 1656 3127831 - 3127853 + g 71 -9 -3.8535 | opp_overlap 3127832, overlap 3127829 3127825 3127832 GCTCGAACCGGAAGT AGCCGACACG GTA CGGGTCGGCG TCTTTCTTTCCGTTG Rv2821c 3128963 - 3128253 - | hypothetical protein Rv2822c 3129347 - 3128973 - | hypothetical protein TERM 1657 3129267 - 3129279 + g 75 -3.3 -4.72696 | CAGCTGGGTTGTGGT CAGCT CGA AGCCG TTCTTTTTCTTTGGC Rv2823c 3131773 - 3129344 - | hypothetical protein TERM 1658 3129929 - 3129961 + g 72 -11.9 -3.55444 | opp_overlap 3129913 CGTGGCCTCGCGGGG CCGCGCCGGGTCATC GCC GGTGATCGGGCGCAG TTTCGGGCGTGCCAA Rv2824c 3132714 - 3131770 - | hypothetical protein Rv2825c 3133539 - 3132892 - | hypothetical protein TERM 1659 3133122 - 3133093 - G 70 -10.7 -3.53012 | gap 1 GTGCTTGGGCCGAAA GTCGAGCCGGT-CG GCG CGCACCGACTCGGC GGTCCAGATGTGCAG Rv2826c 3134593 - 3133709 - | hypothetical protein Rv2827c 3135483 - 3134596 - | hypothetical protein TERM 1660 3135607 - 3135551 - R 83 -15.9 -3.13376 | opp_overlap 3135540, overlap 3135540 3135564 AAACTCAAGAAATCA CTTGATTTAGGAACGGGCTTCGGTCAG TGA CAGTACGAAACCCGTTCCAAACTCAAG TGCCCTGTACGGGCT TERM 1661 3135666 - 3135656 - R 86 -8.2 -4.60797 | overlap 3135657 CGGCGAGAGACAAAA CGCG CTT CGCG GACGACCGGCCGACG Rv2828c 3136333 - 3135788 - | hypothetical protein TERM 1662 3136018 - 3135989 - G 70 -10.7 -3.53091 | gap 1 ATGCTTGGGCCGAAA GTCGAGCCGGT-CG GCG CGCACCGACTCGGC GGTCCAGATGTGCAG TERM 1663 3136492 - 3136468 - R 71 -11.3 -3.53224 | GACGGCGGCCTCAAA CGCCTCGGCGG TGG CCGCCGACGGG TGCGTGATGCCACTG Rv2829c 3137012 - 3136620 - | hypothetical protein Rv2830c 3137224 - 3137009 - | hypothetical protein TERM 1664 3137334 - 3137375 + G 71 -3 -4.58283 | gap 3, overlap 3137337 3137340 CTCACCCTCAACCGG CCGCAGTCCCGCAACG-CGCT CTC GGCGGCGCTACGGGA-T-CGG TTTTTCGCGGCGTTG TERM 1665 3137558 - 3137534 - g 73 -14.3 -3.21099 | overlap 3137555 GCCGGCCATGACCAA GCCGGTGATCG GCG CGATCAACGGC GCCGCGGTCACCGGC echA16 3137271 - 3138020 + | enoyl-CoA hydratase ugpC 3139181 - 3138099 - | sn-glycerol-3-phosphate transport ATP-binding protein ABC transporter UGPC TERM 1666 3138224 - 3138256 + g 70 -13.3 -3.05384 | opp_overlap 3138215 3138171 3138212 ACACGATGCGCGGTG CGCGTGACGACCAGC CCC GCTGGTCGACCGGCG TTGCGTAGACGAAGG ugpB 3140484 - 3139174 - | sn-glycerol-3-phosphate-binding lipoprotein UGPB TERM 1667 3140209 - 3140193 - G 74 -8 -4.25104 | GGTCGTCGAGCAAAA CGACGT CGGGC ACGTCG GTTCCGATGAGCGCC TERM 1668 3140447 - 3140396 - G 72 -13.7 -3.06796 | gap 3, opp_overlap 3140409 CCGGACTTCACCGAA CCGCCGCCGCCCATCCCGGCGCAGCC GGC GGTCACGCCGG--CGG-CGGCAGCGG CCAGCGCGAGGAATT ugpE 3141314 - 3140487 - | sn-glycerol-3-phosphate transport integral membrane protein ABC transporter UGPE TERM 1669 3141011 - 3140997 - G 75 -3.4 -4.78107 | overlap 3140976 3140999 GATGATCACCAAAAA CACCGC CGT GCGGCC CGGGAACCGGACAAA TERM 1670 3141009 - 3140999 - G 70 -8.2 -4.00443 | overlap 3140976 3140997 TGATCACCAAAAACA CCGC CGT GCGG CCCGGGAACCGGACA ugpA 3142222 - 3141311 - | sn-glycerol-3-phosphate transport integral membrane protein ABC transporter UGPA TERM 1671 3141593 - 3141551 - G 83 -4.1 -5.20333 | gap 2, opp_overlap 3141581, overlap 3141592 GATCGACAAGAAAAA CGTGGTCGGCCGCAGCTGCGG CAA CAGCA-CT-CGACGGAACACG GCCCACCGGCTGGCG TERM 1672 3141763 - 3141749 - G 82 -11.4 -4.08767 | CGCATCCTGGTAAAA GTCGGG CAC CCCGAC CCCGATCCGGCGCAA dinF 3143628 - 3142309 - | DNA-damage-inducible protein F TERM 1673 3143318 - 3143286 - G 74 -15.5 -2.62616 | opp_overlap 3143274, overlap 3143270 CGATCGCCGACACCA GCGGCGTCGCGGTGG CTT CCACCACGACGACGA CCAACGCGCCCAGAC Rv2837c 3144645 - 3143635 - | hypothetical protein rbfA 3145171 - 3144620 - | ribosome-binding factor A infB 3147873 - 3145171 - | translation initiation factor IF-2 TERM 1674 3145836 - 3145880 + g 72 -12 -3.53444 | gap 1, overlap 3145837 TCCGCTTGCGTGAGC GCGCCGCCAGGGCGTTGCGCT TGCG AGCGCTACGCCG-GTCGGCGA TTTGGCGGGCGATAC TERM 1675 3145837 - 3145879 + g 75 -15.5 -2.71924 | gap 1, overlap 3145836 CCGCTTGCGTGAGCG CGCCGCCAGGGCGTTGCGCT TGCG AGCGCTACGCCG-GTCGGCG ATTTGGCGGGCGATA Rv2840c 3148258 - 3147959 - | hypothetical protein nusA 3149428 - 3148385 - | transcription elongation factor NusA Rv2842c 3149976 - 3149425 - | hypothetical protein Rv2843 3150171 - 3150716 + | hypothetical protein Rv2844 3150713 - 3151201 + | hypothetical protein proS 3152950 - 3151202 - | prolyl-tRNA synthetase efpA 3154631 - 3153039 - | integral membrane efflux protein EfpA cysG 3155871 - 3154654 - | multifunctional uroporphyrinogen III methylase/precorrin-2 oxidase/ferrochelatase TERM 1676 3155367 - 3155328 - G 77 -16.4 -2.70932 | CGGCCTGGGCAAGCA GCCGGCGACCGCGAACCG TGAT CAGTTCGGGATCGCCGGG ACCGCCGCCGACCAA TERM 1677 3156147 - 3156109 - R 70 -11.6 -3.17075 | opp_overlap 3156123 TGGCCGCGAATGTAA CGCCACTGCGAATTTCCG GCC CGGCTTTTCGCAGTGCCG TTACGCTCGTGGAGT cobB 3157521 - 3156148 - | cobyrinic acid a,c-diamide synthase TERM 1678 3156412 - 3156396 - G 74 -10.1 -3.81146 | overlap 3156397 GCGCCGAATCAACAA CCGCGAC GGC GTCGCGA TAACCCAGCTTGAGA cobO 3158144 - 3157521 - | cob(I)yrinic acid a,c-diamide adenosyltransferase TERM 1679 3158035 - 3157982 - G 70 -10.9 -3.53019 | opp_overlap 3158023 3158024, overlap 3157980 TGACAAACTGAAACA CCGCGATGTCCAGACCAGCGTTCCA CGCC CGCAACGCCATTCCGAACGCCGCGG TCGATTTTCCTTTGC TERM 1680 3158023 - 3158039 + g 70 -2.1 -4.5852 | opp_overlap 3157982 3157980, overlap 3158024 GCCCGCAACGCCATT CCGAACG CCG CGGTCGA TTTTCCTTTGCCTTC Rv2850c 3160054 - 3158165 - | magnesium chelatase Rv2851c 3160521 - 3160051 - | hypothetical protein mqo 3162061 - 3160580 - | malate:quinone oxidoreductase TERM 1681 3162721 - 3162747 + G 76 -15 -3.14132 | opp_overlap 3162720 GGTGGGCCCAACCAG GCCGGCGGCGCC GGC GGCAACGCCGGC TTGATCGGCAACGGC PE_PGRS48 3162268 - 3164115 + | PE-PGRS family protein Rv2854 3164152 - 3165192 + | hypothetical protein mtr 3165205 - 3166584 + | mycothione/glutathione reductase nicT 3166684 - 3167802 + | nickel-transport integral membrane protein Rv2857c 3169359 - 3168583 - | short chain dehydrogenase aldC 3170723 - 3169356 - | aldehyde dehydrogenase TERM 1682 3169734 - 3169719 - G 74 -5.4 -4.54727 | gap 1 TGGTGGAAACCAAAA TCCGCGC CCA GC-CGGA GCCGTACCCCGAAAC Rv2859c 3171646 - 3170720 - | amidotransferase glnA4 3173000 - 3171627 - | glutamine synthetase TERM 1683 3173149 - 3173104 - R 100 -23.6 -2.78596 | opp_overlap 3173111 3173114, overlap 3173111 3173114 GAGCCGGCGAGTAGA CGCGAAAGAACATGATGGGC GCTGGT GCCCATCATGTTCTTTTGCG CCTACTCGCGCTACA TERM 1684 3173111 - 3173142 + r 100 -18.2 -4.12188 | opp_overlap 3173104 3173111 3173114, overlap 3173114 CGAGTAGACGCGAAA GAACATGATGGGCG CTGG TGCCCATCATGTTC TTTTGCGCCTACTCG TERM 1685 3173142 - 3173111 - R 100 -17.5 -3.64599 | opp_overlap 3173111 3173114, overlap 3173104 3173114 CGAGTAGACGCGAAA GAACATGATGGGC GCTGGT GCCCATCATGTTC TTTTGCGCCTACTCG TERM 1686 3173114 - 3173139 + r 93 -14.1 -4.18506 | opp_overlap 3173111 3173104 3173114, overlap 3173111 GTAGACGCGAAAGAA CATGATGGGCG CTGG TGCCCATCATG TTCTTTTGCGCCTAC TERM 1687 3173139 - 3173114 - R 86 -13.4 -3.95378 | opp_overlap 3173114 3173111, overlap 3173111 3173104 GTAGACGCGAAAGAA CATGATGGGC GCTGGT GCCCATCATG TTCTTTTGCGCCTAC mapB 3174017 - 3173160 - | methionine aminopeptidase TERM 1688 3173348 - 3173379 + g 86 -17.4 -3.30441 | TGATGGTCTCGACAG CGGGCTGGTCGT AGTGCAAG ACGACCAGCCCG TTGTGGAACGTCGTG Rv2862c 3174643 - 3174059 - | hypothetical protein Rv2863 3174992 - 3175372 + | hypothetical protein Rv2864c 3177265 - 3175454 - | penicillin-binding lipoprotein TERM 1689 3177094 - 3177152 + g 78 -10 -4.07568 | overlap 3177053 CGCGCGCCTCGTTGG GGTTGTCGCTGAGCTGGGCGGCGGAGGC GGT GTCACCGATGGCCAGCGCGGCGAAGAAC TTTTCGGCCGCCGGA Rv2865 3177537 - 3177818 + | hypothetical protein Rv2866 3177822 - 3178085 + | hypothetical protein Rv2867c 3179312 - 3178458 - | hypothetical protein TERM 1690 3179372 - 3179357 - R 71 -5.4 -4.43477 | GCCACTGAATGAAAA GCTGAC CCCT ATCAGC TTACGGTCACAATAG ispG 3180531 - 3179368 - | 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase Rv2869c 3181762 - 3180548 - | transmembrane protein dxr 3183011 - 3181770 - | 1-deoxy-D-xylulose 5-phosphate reductoisomerase TERM 1691 3182523 - 3182472 - G 70 -10.7 -3.56092 | opp_overlap 3182522 GGACCAGCCCCGAAA CGGCCCTCCCGAGGCCGTCAGCA CCAGCT TGGCGACCTCGTCGGGAGTGCCG CCGCGCAGGCACTGG TERM 1692 3182522 - 3182550 + g 70 -13 -3.04144 | opp_overlap 3182472 CCTCGTCGGGAGTGC CGCCGCGCAGGC ACTGG GCCAGCGCGGAG TGTTCGGAGTCGACC Rv2871 3183138 - 3183395 + | hypothetical protein Rv2872 3183382 - 3183825 + | hypothetical protein mpt83 3183905 - 3184567 + | cell surface lipoprotein mpt83 (lipoprotein P23) TERM 1693 3184780 - 3184743 - f 81 -14.1 -3.63569 | gap 1, overlap 3184745 3184746 CGAACTGCGCAACAA CACCGCCGGGCTGCTACG GCG CGT-GCAGGCCGGCGAAG ACATCACCATCACTG TERM 1694 3184778 - 3184745 - f 85 -15.3 -3.39556 | gap 1, overlap 3184743 3184746 AACTGCGCAACAACA CCGCCGGGCTGCTACG GCG CGT-GCAGGCCGGCGA AGACATCACCATCAC TERM 1695 3184777 - 3184746 - f 80 -16.6 -2.63252 | gap 1, overlap 3184745 3184743 ACTGCGCAACAACAC CGCCGGGCTGCTACG GCG CGT-GCAGGCCGGCG AAGACATCACCATCA TERM 1696 3185801 - 3185857 + G 70 -11.6 -3.38786 | gap 2, opp_overlap 3185817 GGCGCTTTTCGGCGC CGCCAGCGTGAGATCAGGATCGCCACCG GTT CCGTGACGATCCTG--CTGGCGGTGGCG TTGGTGTTCGATCTG dipZ 3184847 - 3186934 + | integral membrane C-type cytochrome biogenesis protein DipZ mpt70 3187030 - 3187611 + | major secreted immunogenic protein MPT70 Rv2876 3187663 - 3187977 + | transmembrane protein Rv2877c 3188871 - 3188008 - | integral membrane protein mpt53 3189397 - 3188876 - | soluble secreted antigen MPT53 precursor Rv2879c 3190152 - 3189583 - | hypothetical protein Rv2880c 3190678 - 3189851 - | hypothetical protein cdsA 3191621 - 3190701 - | integral membrane phosphatidate cytidylyltransferase CdsA TERM 1697 3190889 - 3190874 - G 72 -5.4 -4.30576 | gap 1, opp_overlap 3190877, overlap 3190875 3190877 TGGTGAGCACGAAAA GCAC-GC CGA GCAGTGC ACCAATCCACGGCGT frr 3192201 - 3191644 - | ribosome recycling factor TERM 1698 3191779 - 3191799 + g 83 -15.5 -3.54307 | overlap 3191792 GCCTTCCTTACGGAT GCGATGGAG TTC CTCCATCGC TTTGCGACGGATATT pyrH 3193158 - 3192373 - | uridylate kinase TERM 1699 3193295 - 3193267 - H 78 -12.4 -3.68569 | gap 1, opp_overlap 3193265 TTAGTCACGCAACAA CGAGGGGCC-GGC CGAG GCCAGGCCCGTCG ACTATCTCAAGGTGT Rv2884 3193393 - 3194151 + | transcriptional regulatory protein TERM 1700 3194180 - 3194192 + T 70 -10.5 -3.61398 | GTCACTTGACTTGCA CCCCG TCT CGGGG TTGTTCGCCGGCCGG Rv2885c 3195548 - 3194166 - | transposase TERM 1701 3194411 - 3194437 + g 75 -9.5 -4.09685 | gap 1 CGTCCCAGCCGATGT CTTGCACATGCC GGCA GGCATG-GCAGG TTTTCGACGATGGGA Rv2886c 3196432 - 3195545 - | resolvase Rv2887 3196431 - 3196850 + | transcriptional regulatory protein amiC 3198285 - 3196864 - | amidase tsf 3199107 - 3198292 - | elongation factor Ts rpsB 3199982 - 3199119 - | 30S ribosomal protein S2 TERM 1702 3199616 - 3199656 + g 71 -12.5 -3.30124 | opp_overlap 3199612, overlap 3199617 CCTCGAAGCCACCGG TCTGCTCCATCGCCTCAAG CTC CTTGAGGCGTTGCAGCCGC TTATGCACGGTGGAG TERM 1703 3199617 - 3199655 + g 74 -16 -2.57931 | opp_overlap 3199612, overlap 3199616 CTCGAAGCCACCGGT CTGCTCCATCGCCTCAAG CTC CTTGAGGCGTTGCAGCCG CTTATGCACGGTGGA TERM 1704 3200661 - 3200697 + Gr 100 -21.5 -2.89564 | CACCGTGATCGGCGC GCTGGCGGCCGGGCACC CCG GGTGCCAGGCCGCCGCC TGTCTGCACTGGGGG PPE45 3202020 - 3200794 - | PPE family protein Rv2891 3200266 - 3201015 + | hypothetical protein TERM 1705 3201673 - 3201649 - Gf 95 -10 -4.56597 | GTTCTGCCCGAAAAA GTTGGTCGCG ACCAG CGCCACCAAC AGCGCGCGGTTGGCA Rv2893 3202420 - 3203397 + | oxidoreductase xerC 3204290 - 3203394 - | site-specific tyrosine recombinase XerC viuB 3205232 - 3204381 - | mycobactin utilization protein ViuB Rv2896c 3206434 - 3205265 - | hypothetical protein Rv2897c 3207942 - 3206431 - | hypothetical protein TERM 1706 3207135 - 3207105 - G 71 -12.4 -3.28791 | ATCCCCCGCCGACAA GCGCCGCAACGCTG GAA CTGTGGTGCGGCGC CACGAACGGCGGCCG Rv2898c 3208328 - 3207942 - | hypothetical protein fdhD 3209406 - 3208576 - | formate dehydrogenase accessory protein fdhF 3211745 - 3209406 - | formate dehydrogenase H Rv2901c 3212108 - 3211803 - | hypothetical protein rnhB 3212956 - 3212162 - | ribonuclease HII lepB 3213854 - 3212970 - | signal peptidase I LepB rplS 3214253 - 3213912 - | 50S ribosomal protein L19 lppW 3214628 - 3215572 + | alanine rich lipoprotein LppW trmD 3216357 - 3215665 - | tRNA (guanine-N(1)-)-methyltransferase rimM 3216891 - 3216361 - | 16S rRNA-processing protein Rv2908c 3217147 - 3216905 - | hypothetical protein rpsP 3217643 - 3217155 - | 30S ribosomal protein S16 TERM 1707 3217207 - 3217248 + g 100 -16.5 -4.56597 | overlap 3217222 AGCGCCGGCGTGTCC GGCTGCTCAGGCTGCGGCG CTGG CTCAGCAGCCTTGGCAGCC TTTTTGGCCGGCGAC Rv2910c 3218270 - 3217827 - | hypothetical protein dacB2 3218339 - 3219214 + | D-alanyl-D-alanine carboxypeptidase TERM 1708 3219230 - 3219247 + T 70 -12.7 -2.94356 | opp_overlap 3219228, overlap 3219228 3219221 CACCGCGAGCAGACG TGGGCGC TGGT GCGCCCA TCATGTTCTTTTGCG Rv2912c 3219861 - 3219274 - | TetR family transcriptional regulator TERM 1709 3219590 - 3219630 + g 70 -11.8 -3.40073 | gap 1, opp_overlap 3219583, overlap 3219601 CGCAAAATCGTCAGC GCCGCCGGAAGCGCCGGCC GATC GGCCGGTATTTC-GGCGAC TTGCTTGGTGAACGT Rv2913c 3221698 - 3219863 - | D-amino acid aminohydrolase TERM 1710 3220902 - 3220892 - G 79 -2.4 -5.06414 | opp_overlap 3220898, overlap 3220870 3220894 3220895 GCTGGCCAAGAAAAA CAGC AGC GCGG ACACCGGGTTGTCGA TERM 1711 3221700 - 3221719 + r 78 -6.4 -4.65895 | opp_overlap 3221698 3221700 CGCCAAGCTAACATA GATAGCGA TCAC TCGCAATC TTTTTGGCTGACGCC pknI 3223524 - 3221767 - | transmembrane serine/threonine-protein kinase I Rv2915c 3224680 - 3223568 - | hypothetical protein TERM 1712 3224507 - 3224557 + g 76 -14.7 -3.10715 | opp_overlap 3224536 GTGCGCGTCGACCAG CCCG-GGCAGGATCCAGCCGCCGTC AAA GACGGTGTC-GGCTCCTGCCACCGG TTCGGTGCTAATGCG ffh 3226285 - 3224708 - | signal recognition particle protein TERM 1713 3225957 - 3225993 + g 70 -13.5 -3.01712 | GTCGTCTTCCCGGAG CCCTGCAGGCCGGCGAG CAT CACGACGGTCGGCGGGG TCTTCGCAAACGCCA Rv2917 3226363 - 3228243 + | hypothetical protein glnD 3230680 - 3228254 - | PII uridylyl-transferase glnB 3231076 - 3230738 - | nitrogen regulatory protein P-II GLNB amt 3232506 - 3231073 - | ammonium transporter ftsY 3234139 - 3232871 - | cell division protein FtsY smc 3237806 - 3234189 - | chromosome partition protein Smc TERM 1714 3237165 - 3237197 + g 75 -11.9 -3.75153 | overlap 3237166 TTGGATGGCCGCGGC ACGCTGGGCCGCC TCGGCCT GCCGGCCCAGCGG TTTGAGTTGACGCCG TERM 1715 3237166 - 3237196 + g 76 -15.4 -2.84878 | overlap 3237165 TGGATGGCCGCGGCA CGCTGGGCCGCC TCGGCCT GCCGGCCCAGCG GTTTGAGTTGACGCC acyP 3238099 - 3237818 - | acylphosphatase Rv2923c 3238499 - 3238086 - | hypothetical protein fpg 3239470 - 3238601 - | formamidopyrimidine-DNA glycosylase rnc 3240551 - 3239829 - | ribonuclease III TERM 1716 3239887 - 3239897 + g 86 -8.2 -4.74801 | overlap 3239883 3239890 AGGGCTTTCCAAGCG GCCG CCG CGGC TTTTTGCTCGGCTTC TERM 1717 3239890 - 3239909 + g 73 -3.5 -4.61482 | gap 1, overlap 3239883 3239887 GCTTTCCAAGCGGCC GCCGCGGC TTTTT GCT-CGGC TTCTTTTTTGGACCG Rv2926c 3241171 - 3240548 - | hypothetical protein Rv2927c 3241959 - 3241222 - | hypothetical protein tesA 3242198 - 3242983 + | thioesterase TESA TERM 1718 3243161 - 3243125 - g 100 -19.4 -3.05022 | gap 1, opp_overlap 3243158 3243160 GGCTTCAGACACACA CGGGGGCGGTGGCGGCC GACC GGTCACC-CCGCCCCCG CCCGGTATGCACCAT Rv2929 3242970 - 3243281 + | hypothetical protein TERM 1719 3244445 - 3244488 + G 88 -10.3 -4.36914 | opp_overlap 3244465, overlap 3244444 3244447 3244482 TGTCATTTTTGCGCC GT-CCGGCCCGCTGGATGCAA CTGC TTGCCACCAGCGG-CCGGTGC TTTTCTGCGGCACCG TERM 1720 3244447 - 3244485 + G 78 -15.3 -3.1733 | gap 1, opp_overlap 3244465, overlap 3244444 3244445 3244482 TCATTTTTGCGCCGT CCGGCCCGCTGGATGCAA CTGC TTGCCACCAGCGG-CCGG TGCTTTTCTGCGGCA fadD26 3243697 - 3245448 + | acyl-CoA synthetase TERM 1721 3246209 - 3246178 - g 73 -13.8 -3.13522 | gap 1, opp_overlap 3246177 3246173, overlap 3246176 ATGGTTGGAGCAATA GCGGTGGCGCGATGA GCA TCATCGC-CAACCGC CTCTCGTATTTCCTT TERM 1722 3246795 - 3246779 - g 73 -12.3 -3.36273 | CTCTGTCAAGACCAA CCTCGGT CAC ACCGAGG CTGCGGCTGGAATCG ppsA 3245445 - 3251075 + | phenolpthiocerol synthesis type-I polyketide synthase PPSA ppsB 3251072 - 3255688 + | phenolpthiocerol synthesis type-I polyketide synthase PPSB TERM 1723 3256383 - 3256399 + G 70 -6.5 -4.25104 | overlap 3256380 AAGCGATATGGCGTT GGTGGGT GGA ACCAACC TTTTGCTGAGCCCGG ppsC 3255685 - 3262251 + | phenolpthiocerol synthesis type-I polyketide synthase PPSC TERM 1724 3262554 - 3262574 + G 73 -3.9 -4.60041 | overlap 3262550 GGTTTCGTTTCCGAT GTCGACG CGTTCGA CGCCGAC TTTTTCGGAATCACT TERM 1725 3263575 - 3263539 - g 77 -12.2 -3.64703 | gap 1, opp_overlap 3263533 TCGTGCCGACCGAAA GCGCCCCGTGG-CCGGC GGCT GCCGGTCCACGCAGGGC TGCGGTGTCATCGTT TERM 1726 3266375 - 3266334 - g 78 -14.3 -3.53012 | GCGGCTTCCTTGAAA GGGCTGGTGCGGGTGCTCG CCTT CGAGCACCCGGACATGCGC ACCACCCTGGTCGAT ppsD 3262248 - 3267731 + | phenolpthiocerol synthesis type-I polyketide synthase PPSD TERM 1727 3269165 - 3269127 - g 83 -15.8 -3.53012 | TGCTCTCGGCGCAAA CGGCCGCGGCGCTCGGCG AGT CGCGGACCGCCCTGGCCG CGGCGCTAGAAACGC ppsE 3267737 - 3272203 + | phenolpthiocerol synthesis type-I polyketide synthase PPSE TERM 1728 3272583 - 3272555 - g 76 -14.6 -3.18264 | gap 1, overlap 3272556 3272571 3272572 GTGGGGACTGAGCAA GTCCG-CGGCGCG CAAA CGCGCCGCCGAAC TGCTCGAGCAATTCA TERM 1729 3272581 - 3272556 - g 77 -16.1 -2.50816 | overlap 3272555 3272571 3272572 TGGGGACTGAGCAAG TCCGCGGCGCG CAAA CGCGCCGCCGA ACTGCTCGAGCAATT drrA 3272214 - 3273209 + | daunorubicin-DIM-transport ATP-binding protein ABC transporter DrrA drrB 3273206 - 3274075 + | daunorubicin-DIM-transport integral membrane protein ABC transporter DrrB drrC 3274072 - 3274902 + | daunorubicin-DIM-transport integral membrane protein ABC transporter DrrC papA5 3274949 - 3276217 + | acyltransferase PapA5 mas 3282715 - 3276380 - | multifunctional mycocerosic acid synthase membrane-associated MAS TERM 1730 3277278 - 3277306 + g 70 -10.3 -3.66654 | gap 1, overlap 3277268 3277277 ATGTCGGCCCCAGCC GCGC-GCAGGCC TTCGAT GGTCTGCCGCGC TTTGGGGTTGGGCTG TERM 1731 3278009 - 3278044 + g 74 -15.5 -2.55351 | overlap 3278008 CGCCTGCCCCACACC GCCGGTGGCGGAGTG AATCAA CACTTTGTCACCGGC CTTGATCTGAGCCAG TERM 1732 3278687 - 3278707 + g 70 -11.1 -3.5241 | opp_overlap 3278682, overlap 3278686 TAGCAGACCACGCAG GCCGGCCTG CTC CAGGTTGGC TCTTTCTCCCGAGTC TERM 1733 3282378 - 3282349 - G 82 -6.3 -4.7373 | gap 1, overlap 3282351 TCAGCCCAGTAAAAA CGGCCGTCGAGGAC CCG GCCAACGAC-GCCG GATCCAGACCAGCAT TERM 1734 3284615 - 3284586 - g 73 -4.1 -4.59773 | overlap 3284587 GGCTATTGGCAAAAA CCCGACGAGAGTG AGCG CACGTTCGGCGGA AAGATTGTCACCCCT fadD28 3283335 - 3285077 + | acyl-CoA synthetase TERM 1735 3285135 - 3285123 - g 72 -4.8 -4.57073 | TATCCGTTTGAAAAA GTCC TCCCC GGAC TGCCGCGCCACCATC TERM 1736 3285870 - 3285882 + G 71 -3.3 -4.63932 | overlap 3285864 3285861 GGGACACGATTGGGG AACCG ATT CGGTA TTTTCTTGGACGCTG mmpL7 3285070 - 3287832 + | transmembrane transport protein MmpL7 TERM 1737 3289244 - 3289293 + G 80 -15.5 -3.28712 | opp_overlap 3289272, overlap 3289248 GATTTCAACGCCCAA CTGGGCGCCTGGCTGGCGCTGGT GAAC ACCCGCACCCGCCGGGCGCTGGG TTGTGCGCCCACCGA TERM 1738 3289248 - 3289289 + G 93 -19.3 -2.59431 | opp_overlap 3289272, overlap 3289244 TCAACGCCCAACTGG GCGCCTGGCTGGCGCTGGT GAAC ACCCGCACCCGCCGGGCGC TGGGTTGTGCGCCCA Rv2943 3288464 - 3289705 + | IS1533 transposase TERM 1739 3290029 - 3290043 + G 70 -4.2 -4.56597 | GATTTCATCACCGCC CGCGAT AAC GTCGTG TTTTTGGGCCCCGCC Rv2943A 3289705 - 3290235 + | transposase Rv2944 3289790 - 3290506 + | IS1533 transposase lppX 3291325 - 3290624 - | lipoprotein LppX TERM 1740 3290788 - 3290808 + g 77 -7.5 -4.30576 | GCATCTTGACAGAGC TCGCGGGGA TGG TCCCGGTGA TTTTGGTGGTCGAAA TERM 1741 3291295 - 3291310 + g 70 -6 -4.24294 | opp_overlap 3291294 3291292 3291295 GCACCACCAGAACAG CGGACG TCAC CGCCCG TTTTCCATCATTCAT pks1 3296353 - 3291503 - | polyketide synthase PKS1 TERM 1742 3291756 - 3291717 - G 70 -9.8 -3.63895 | GTTAATGAGTCGAAA CCGAGGTCGCCGAATTCG GTGT CGGGGTCGACGTCCTCGG CGGAGGGCCTACCCA TERM 1743 3294309 - 3294286 - G 83 -14.6 -3.65529 | AGACGTCCACGGAAA TCGCATCCGC GCCC GCGGACGCGA AGCGGGCCCGCACCC TERM 1744 3294898 - 3294888 - G 79 -8.2 -4.43189 | overlap 3294889 ACCAACTCCACAAAA CCCG CCC CGGG GAACAGCACCACCCC pks15 3297840 - 3296350 - | polyketide synthase PKS15 TERM 1745 3297216 - 3297197 - G 74 -10 -3.7614 | AACGACGACGAACAA GCGGTATC CACT GACACCGC CGGGCCCTGCAGCCC fadD22 3299954 - 3297837 - | acyl-CoA synthetase Rv2949c 3300570 - 3299971 - | hypothetical protein fadD29 3302344 - 3300596 - | acyl-CoA synthetase Rv2951c 3304248 - 3303103 - | oxidoreductase Rv2952 3304441 - 3305253 + | methyltransferase (methylase) Rv2953 3305279 - 3306535 + | hypothetical protein Rv2954c 3307391 - 3306666 - | hypothetical protein Rv2955c 3308545 - 3307580 - | hypothetical protein TERM 1746 3307984 - 3307970 - G 85 -7.8 -4.72272 | GGCCGCCACGAAAAA GTCGAC CTC GCCGAC CGCGTCCCCGGCGGC Rv2956 3308668 - 3309399 + | hypothetical protein Rv2957 3309470 - 3310297 + | glycosyl transferase Rv2958c 3312000 - 3310714 - | glycosyl transferase Rv2959c 3312838 - 3312101 - | methyltransferase (methylase) TERM 1747 3312364 - 3312386 + g 71 -3.4 -4.59853 | opp_overlap 3312361, overlap 3312345 CGCTATCTAAGATGG CGAAGATCTT GCC AGGGTATTCG TTTTTGAGGCGTTGA Rv2960c 3313201 - 3312953 - | hypothetical protein Rv2961 3313283 - 3313672 + | transposase Rv2962c 3315122 - 3313773 - | glycosyl transferase Rv2963 3315236 - 3316456 + | integral membrane protein purU 3316529 - 3317461 + | formyltetrahydrofolate deformylase TERM 1748 3318308 - 3318338 + T 73 -13.3 -3.18728 | opp_overlap 3318307 AAGGCCTCACACGAT CGGACCTAGTCCC GCAAA GGAGCTAGGTCCG TTCGGTGTTGAGCCT coaD 3318815 - 3318330 - | phosphopantetheine adenylyltransferase TERM 1749 3318488 - 3318477 - G 81 -5.8 -4.72272 | GGTCGCGACGAAAAA GGTG TCCA CACC GGCAATGTGTTTGTT TERM 1750 3318648 - 3318591 - G 73 -9.2 -3.92602 | gap 2, opp_overlap 3318591 3318602 3318603 3318605, overlap 3318603 3318607 GCAAGACCTGACAAA GTCGACCACCAAGCCATGCCCGACCTGC ACGC GCAGATTGGGCA-GG-TGCGTTGTCGAC TCCTTGACCATCGCG TERM 1751 3318941 - 3318918 - R 72 -4.5 -4.57837 | overlap 3318919 ACACGTTGGCAAAAA GCCGTTCGG CCAGTT CCAAACGGG TGTCGCCGTAAACAC Rv2966c 3319467 - 3318901 - | methyltransferase (methylase) TERM 1752 3319181 - 3319127 - G 79 -16.3 -2.9155 | gap 1, overlap 3319122 TCGGCCAACACCAGA TCCACCGGGGACGTGGTCCCGGCCGC CACG ACGGCCGCCACCGCG-CCCCGGCGCA GCGTCGCACCGGAGA pca 3323046 - 3319663 - | pyruvate carboxylase Rv2968c 3323703 - 3323071 - | integral membrane protein Rv2969c 3324476 - 3323709 - | hypothetical protein lipN 3325703 - 3324573 - | lipase/esterase LipN TERM 1753 3325321 - 3325292 - G 83 -15 -3.6422 | overlap 3325290 CACCGTGGTAAAAGA CCAGCAGCGGCG TGGCGC CACCGCCGCTGG GGCGGTAGTGCCGCG Rv2970A 3325934 - 3326104 + | hypothetical protein Rv2971 3326101 - 3326949 + | oxidoreductase Rv2972c 3327736 - 3327023 - | hypothetical protein recG 3329946 - 3327733 - | ATP-dependent DNA helicase RECG Rv2974c 3331361 - 3329949 - | hypothetical protein TERM 1754 3331238 - 3331209 - G 73 -13.5 -3.21747 | overlap 3331227 CGACGCGACGACCAA CTCGACGCCGCGC CACA ACGCGGCCCCGAG GGCGTTGGCGTCGAC Rv2975c 3331612 - 3331358 - | hypothetical protein ung 3332754 - 3332071 - | uracil-DNA glycosylase thiL 3333788 - 3332787 - | thiamine monophosphate kinase TERM 1755 3333799 - 3333811 + r 70 -10.5 -3.61894 | overlap 3333803 GTCACGCGACTTGCA CCCCG TCT CGGGG TTGTTCGGCAGCCTT Rv2978c 3335164 - 3333785 - | transposase Rv2979c 3335748 - 3335164 - | resolvase TERM 1756 3335541 - 3335556 + g 73 -9 -3.96148 | TCACCCGCGCGACCT GCCGAT CCAG ATCGGC TTTCTGATCGGCCGA TERM 1757 3336354 - 3336389 + G 72 -14 -2.99471 | gap 1, opp_overlap 3336343 3336344 AAAACCCGGACGAGC CAGGCCGGTCCAC-CTG GTA CACCGTGGACCGGCCGG TGTATGTGGCGCTGA Rv2980 3335960 - 3336505 + | hypothetical protein ddl 3337917 - 3336796 - | D-alanyl-alanine synthetase A gpsA 3338999 - 3337995 - | NAD(P)H-dependent glycerol-3-phosphate dehydrogenase Rv2983 3339118 - 3339762 + | hypothetical protein ppk 3339854 - 3342082 + | polyphosphate kinase TERM 1758 3342183 - 3342210 + G 82 -15.6 -3.48276 | gap 1, opp_overlap 3342179 TCGATCCAGAACTCG TCC-GCCCGCCGG CGC TCGGCGGGCCGGA TTGTGTACGCCGCCG mutT1 3342165 - 3343118 + | hydrolase MutT1 TERM 1759 3343119 - 3343168 + T 86 -16 -3.11218 | gap 1, opp_overlap 3343121 3343123 AACGTGCGGGCCTAA CACACGGATACCCTTCGTCAC ATTGCCACC GTG-CAAAGGGTATCCGTGTG TCTTGACCTATTTGC TERM 1760 3343166 - 3343121 - T 88 -17.1 -3.01712 | gap 1, opp_overlap 3343119, overlap 3343123 CGTGCGGGCCTAACA CACGGATACCCTTCGTCACATT GCC ACCGTG-CAAAGGGTATCCGTG TGTCTTGACCTATTT TERM 1761 3343164 - 3343123 - T 75 -13.9 -3.06696 | gap 1, opp_overlap 3343119, overlap 3343121 TGCGGGCCTAACACA CGGATACCCTTCGTCACATT GCC ACCGTG-CAAAGGGTATCCG TGTGTCTTGACCTAT hupB 3343820 - 3343176 - | DNA-binding protein HU TERM 1762 3343221 - 3343245 + g 77 -10 -3.90744 | gap 1, overlap 3343222 CTTGGCGGGAGCCTT GGTAGCCGGCC GCTT GGCC-GCTGCC TTCTTTGCCGGCGCC leuD 3344629 - 3344033 - | isopropylmalate isomerase small subunit TERM 1763 3344443 - 3344421 - G 70 -11.2 -3.53224 | overlap 3344437 GATCCGGTGCCGAAA TCGGGCCCGG CAA CCAGGACCGA ACCCCGGTCAAAGGG leuC 3346075 - 3344654 - | isopropylmalate isomerase large subunit Rv2989 3346147 - 3346848 + | transcriptional regulatory protein Rv2990c 3347719 - 3346859 - | hypothetical protein Rv2991 3347982 - 3348473 + | hypothetical protein TERM 1764 3348490 - 3348531 + T 100 -24.1 -2.79133 | gap 1, opp_overlap 3348490 3348497, overlap 3348497 TGCCCGGCGAGCAGA CGCAAAATCGCCC-ATTTCG AGA CGAAATTGGGCGATTTTGCG TCTGCTCGGCAGTTG TERM 1765 3348531 - 3348490 - T 100 -24.1 -2.78384 | gap 1, opp_overlap 3348490 3348497, overlap 3348497 TGCCCGGCGAGCAGA CGCAAAATCGCCC-ATTTCG AGA CGAAATTGGGCGATTTTGCG TCTGCTCGGCAGTTG TERM 1766 3348497 - 3348524 + T 100 -13.6 -4.24948 | gap 1, opp_overlap 3348490 3348497, overlap 3348490 CGAGCAGACGCAAAA TCGCCC-ATTTCG AGA CGAAATTGGGCGA TTTTGCGTCTGCTCG TERM 1767 3348524 - 3348497 - T 100 -13.6 -4.24948 | gap 1, opp_overlap 3348497 3348490, overlap 3348490 CGAGCAGACGCAAAA TCGCCC-ATTTCG AGA CGAAATTGGGCGA TTTTGCGTCTGCTCG gltX 3350277 - 3348805 - | glutamyl-tRNA synthetase Rv2993c 3350993 - 3350274 - | 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase TERM 1768 3351597 - 3351615 + Gr 72 -13.8 -2.70932 | overlap 3351603 GTGTCTTCCTGTTTC TCGGCGGC ATG GCCGCCGG TGGTTGCAACAGCGC TERM 1769 3352120 - 3352141 + Gr 79 -9.3 -4.11183 | overlap 3352118 TCCCGTCCGCCTGAT CGCCGCTGC CGCC GCGGCGACG TTGTTTCTGCTCGCG leuB 3353468 - 3352458 - | 3-isopropylmalate dehydrogenase Rv2994 3351269 - 3352606 + | integral membrane protein serA1 3355069 - 3353483 - | D-3-phosphoglycerate dehydrogenase TERM 1770 3354440 - 3354453 + g 70 -5.9 -4.19817 | CTTGTCGATCAGTCC CGCCG TCTC CGGTG TTTTCGGTAGGTGCA TERM 1771 3355286 - 3355296 + G 75 -4.6 -4.58283 | TGCATCCGCTTGCTT TGGC GTC GCCG TTTTTCGCCGAATTC Rv2997 3355099 - 3356541 + | alanine rich dehydrogenase Rv2998A 3357428 - 3357225 - | hypothetical protein Rv2998 3356815 - 3357276 + | hypothetical protein lppY 3357602 - 3358567 + | lipoprotein LppY Rv3000 3358612 - 3359271 + | transmembrane protein ilvC 3360586 - 3359585 - | ketol-acid reductoisomerase ilvH 3361130 - 3360624 - | acetolactate synthase 3 regulatory subunit ilvB1 3362986 - 3361130 - | acetolactate synthase 1 catalytic subunit TERM 1772 3361732 - 3361751 + g 89 -10.6 -4.19258 | opp_overlap 3361721 CGAAGACGGCGTCCG GCCCGGCG ATCT CGCCGAGC TTTTCGATCACGTAT TERM 1773 3363067 - 3363039 - H 100 -8.9 -5.55769 | gap 1, opp_overlap 3363060 GTGGACAAGAAAAAA CCCTCGC-CAGC TCAGCT GCTGCACGAGGG TCGCGTTGGTGCTCG cfp6 3363348 - 3363686 + | low molecular weight protein antigen 6 (CFP-6) Rv3005c 3364532 - 3363693 - | hypothetical protein TERM 1774 3364642 - 3364628 - H 79 -8.5 -4.2717 | ACCAGCCCACCAAAA GGCCC CAATT GGGCC GCCATGCCGACAGTG lppZ 3364709 - 3365830 + | lipoprotein LppZ Rv3007c 3366450 - 3365836 - | oxidoreductase Rv3008 3366644 - 3367267 + | hypothetical protein gatB 3368793 - 3367264 - | aspartyl/glutamyl-tRNA amidotransferase subunit B pfkA 3369854 - 3368823 - | 6-phosphofructokinase TERM 1775 3369897 - 3369938 + r 72 -13.8 -2.78816 | gap 1, opp_overlap 3369897 3369899 3369904, overlap 3369899 3369901 3369903 CCTGGCGCGAGCAGA CACAGAATCGCA-CGGGCG AGGGG CGCCGGATGCGAGTCTGTG TCTGCTCGCCGCTAA TERM 1776 3369938 - 3369897 - R 72 -13.8 -2.78384 | gap 1, opp_overlap 3369897 3369899 3369901 3369903, overlap 3369899 3369904 CCTGGCGCGAGCAGA CACAGAATCGCA-CGGGCG AGGGG CGCCGGATGCGAGTCTGTG TCTGCTCGCCGCTAA gatA 3371434 - 3369950 - | aspartyl/glutamyl-tRNA amidotransferase subunit A gatC 3371730 - 3371431 - | aspartyl/glutamyl-tRNA amidotransferase subunit C Rv3013 3371815 - 3372471 + | hypothetical protein TERM 1777 3372502 - 3372549 + T 83 -15.6 -3.14344 | opp_overlap 3372491 3372492, overlap 3372507 CCAAGGTTCGCCGAG CGTAACGCCACTGCGAAAAACC GCGC GGAGATTCGCAGTGCCGTTACG TTCGTGACGCGGGTC ligA 3374620 - 3372545 - | NAD-dependent DNA ligase LigA TERM 1778 3373308 - 3373270 - G 83 -12.2 -4.11216 | TGGCGACGTGGAAAA CCCGCTCCCGCAGTTGCC CCG GGCAGCCGCGGGCGTTGG GGCAACGGATGTCGG TERM 1779 3374248 - 3374232 - G 74 -10.1 -3.83026 | opp_overlap 3374238, overlap 3374236 TCGCGGTAGACCAAA GACAGCG CGA CGCCGTC GATCTTGAGCTCACA Rv3015c 3375664 - 3374651 - | hypothetical protein lpqA 3375758 - 3376387 + | lipoprotein LpqA esxQ 3376852 - 3376490 - | Esat-6 like protein esxQ (TB12.9) (Esat-6 like protein 8) PPE46 3378243 - 3376939 - | PPE family protein TERM 1780 3378390 - 3378334 - R 74 -14.5 -2.61274 | gap 3, overlap 3378333 GCTAGCGGAATCAAT GTGCGGCGGCCAGCC-GTGCGGTCAACG CCTC CACCG-CCGCACTGGC-GGCCGCCAAAC CCTCAGGAACCACGC PE27A 3378415 - 3378329 - | PE family protein esxR 3379001 - 3378711 - | secreted ESAT-6 like protein ESXR (TB10.3) (ESAT-6 like protein 9) esxS 3379329 - 3379036 - | Esat-6 like protein esxS PPE47 3380452 - 3379376 - | PPE family protein TERM 1781 3379823 - 3379813 - G 70 -2.6 -4.62302 | GAATAGCGCCAAAAA TATT CGA AATA ATCCAACCAATACTG PPE48 3380682 - 3380440 - | PPE family protein PE29 3380993 - 3380679 - | PE family protein Rv3023c 3382622 - 3381375 - | transposase trmU 3383888 - 3382785 - | tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase iscS 3385066 - 3383885 - | cysteine desulfurase IscS Rv3026c 3386077 - 3385163 - | hypothetical protein Rv3027c 3386814 - 3386074 - | hypothetical protein TERM 1782 3387021 - 3387049 + r 76 -8.8 -4.12188 | gap 1 GTGAGCAGGCGCCAA GGCCCC-CCACGC CTCG GCGTGTCGGGGTC TTTTGCGACTGCTCG fixB 3388031 - 3387075 - | electron transfer flavoprotein subunit alpha fixA 3388870 - 3388070 - | electron transfer flavoprotein subunit beta Rv3030 3389101 - 3389925 + | hypothetical protein Rv3031 3389922 - 3391502 + | hypothetical protein Rv3032 3391534 - 3392778 + | transferase TERM 1783 3393270 - 3393231 - f 74 -14.2 -2.57132 | overlap 3393230 CGTGCTGGGCACAAC CCGACTCGGCCTGGAGGC GCCT GCATCCAAGCCGCACCGG CGCACAATTATCTGC Rv3033 3393380 - 3393928 + | hypothetical protein Rv3034c 3394921 - 3394019 - | transferase Rv3035 3395379 - 3396461 + | hypothetical protein TB22.2 3397141 - 3396458 - | hypothetical protein Rv3037c 3398290 - 3397214 - | hypothetical protein Rv3038c 3399408 - 3398425 - | hypothetical protein echA17 3400183 - 3399419 - | enoyl-CoA hydratase Rv3040c 3401058 - 3400192 - | hypothetical protein Rv3041c 3401918 - 3401055 - | ABC transporter ATP-binding protein serB2 3403162 - 3401933 - | phosphoserine phosphatase ctaD 3404921 - 3403200 - | cytochrome C oxidase polypeptide I TERM 1784 3403928 - 3403902 - G 78 -5.9 -4.62783 | gap 1, overlap 3403903 3403904 GATCCAGTTGAAAAA CTTGATCCCGGT CGGC ACCGCGATC-AG ATACGTCATGAAAGA fecB 3405136 - 3406215 + | FEIII-dicitrate-binding periplasmic lipoprotein adhC 3406285 - 3407325 + | NADP-dependent alcohol dehydrogenase ADHC Rv3046c 3407688 - 3407314 - | hypothetical protein TERM 1785 3407384 - 3407422 + g 82 -11.6 -4.13767 | overlap 3407383 ACGCCGGCCAGCGGC CATCCGGCGGCGGCCAGG ATG CCTGCCACCCGTTGGATG TTTTCCGGTCCGGCG Rv3047c 3408306 - 3408022 - | hypothetical protein nrdF 3409378 - 3408404 - | ribonucleotide-diphosphate reductase subunit beta Rv3049c 3411083 - 3409509 - | monooxygenase TERM 1786 3410910 - 3410924 + g 81 -11.4 -3.91144 | GTCGCGCCAGGTGCC GCCGAC GTC GTCGGC TTTCTCCAATATGAC Rv3050c 3411957 - 3411217 - | AsnC family transcriptional regulator nrdE 3414166 - 3412085 - | ribonucleotide-diphosphate reductase subunit alpha TERM 1787 3413719 - 3413697 - G 95 -5.4 -5.27477 | opp_overlap 3413699 3413701, overlap 3413699 ACGCGAAGCAAAAAA CAGCTCACGG GCT CCCCGCGCTG CTTCTTGCCAGAATT nrdI 3414684 - 3414232 - | ribonucleotide reductase stimulatory protein nrdH 3414958 - 3414719 - | glutaredoxin electron transport protein NrdH Rv3054c 3415989 - 3415435 - | hypothetical protein Rv3055 3416081 - 3416695 + | TetR family transcriptional regulator dinP 3416705 - 3417745 + | DNA polymerase IV Rv3057c 3418662 - 3417799 - | short chain dehydrogenase Rv3058c 3419376 - 3418726 - | TetR family transcriptional regulator cyp136 3419492 - 3420970 + | cytochrome P450 136 Rv3060c 3423213 - 3421741 - | GntR family transcriptional regulator fadE22 3425427 - 3423262 - | acyl-CoA dehydrogenase FADE22 TERM 1788 3424576 - 3424552 - G 70 -11.3 -3.56643 | TGCATAGGCCGGAAA CGCCAGGGCCG CAG CGACCGCGGCG GCCAGCCGAAACTGC TERM 1789 3425324 - 3425302 - G 71 -12.7 -3.28924 | gap 1 GAGGTTCTGCCAGAA CGGCGGGCGG GCGT CC-CCCGCCG CGTCCAGTGATGCAC TERM 1790 3426371 - 3426398 + G 81 -14.8 -3.57144 | opp_overlap 3426388 ACGGCGAGGCGATCG CGCTGTGCCCGG ACAA CCGGCCGCAGCG TTTCCAGGTCACCGC ligB 3425584 - 3427107 + | ATP-dependent DNA ligase TERM 1791 3428214 - 3428239 + G 74 -9.8 -3.87815 | gap 1 GTTCATGAAGGTCGG CACC-ATCGCG CTTCT CGCGATCGGTG TTTGTGCGGCTCACC cstA 3427243 - 3429519 + | carbon starvation protein A CstA Rv3064c 3430250 - 3429825 - | integral membrane protein TERM 1792 3430334 - 3430386 + H 100 -21.8 -3.28912 | gap 1, overlap 3430326 3430336 CACGTGTGGACGCAC GA-GCCTCCTTTGTGTACATTTGTA CATG TACAAATGTACACAAAGGAGGGGTC TTGATCTACCTATAC TERM 1793 3430336 - 3430383 + H 100 -24.6 -2.52023 | overlap 3430326 3430334 CGTGTGGACGCACGA GCCTCCTTTGTGTACATTTGTA CATG TACAAATGTACACAAAGGAGGG GTCTTGATCTACCTA TERM 1794 3430584 - 3430617 + G 77 -11 -3.89346 | overlap 3430578 GCTGTGGTCGGCAAT CGGTACGGCCGCCA TTGTGC TGGTCGCCGTACTG TTTCTCGGCTCGCCG mmr 3430387 - 3430710 + | multidrugs-transport integral membrane protein MMR TERM 1795 3431153 - 3431165 + G 77 -6.9 -4.56775 | overlap 3431139 TCGACGAGCCGCCAA CGCGG TCA CCGTG TTTTTCGACGGCGCT Rv3066 3430707 - 3431315 + | DeoR family transcriptional regulator Rv3067 3431428 - 3431838 + | hypothetical protein pgmA 3433622 - 3431979 - | phosphoglucomutase TERM 1796 3432207 - 3432242 + g 79 -11.1 -3.96624 | gap 1 GGCCAACTCGGTGGC GCTCACCTGGTC-GGC CGACA GCCTGGCCAGGCGGGC TTTCTGCTCCCGATC TERM 1797 3433106 - 3433137 + g 73 -14.4 -3.10905 | gap 1, overlap 3433113 3433131 3433132 CACGCTTGGCTATTG CGGTGGTCGCAGCGG TGT CCGCCG-GGCCACCG TTGGGTGGGTTGTAC ccrB 3433692 - 3434090 + | camphor resistance protein CrcB ccrB 3434087 - 3434467 + | camphor resistance protein CrcB Rv3071 3434464 - 3435573 + | hypothetical protein Rv3072c 3436322 - 3435798 - | hypothetical protein Rv3073c 3436685 - 3436329 - | hypothetical protein Rv3074 3436779 - 3438053 + | hypothetical protein Rv3075c 3438973 - 3438050 - | hypothetical protein Rv3076 3439072 - 3439548 + | hypothetical protein Rv3077 3439541 - 3441352 + | hydrolase hab 3441353 - 3441754 + | hydroxylaminobenzene mutase HAB Rv3079c 3442597 - 3441770 - | hypothetical protein TERM 1798 3442552 - 3442517 - G 75 -11.8 -3.68506 | gap 1, opp_overlap 3442545, overlap 3442505 GAACAGCGACTCAAA CCCGCGGTGCTCGAGTG CCG CACCC-AGCTCCGCCGG GCCGATTCCCTCGTC pknK 3445988 - 3442656 - | serine/threonine-protein kinase transcriptional regulatory protein TERM 1799 3444936 - 3444984 + g 72 -12.9 -3.15249 | overlap 3444939 GCGCAGGATGTCGGT GAGCCGGCTGCGGGTGACCAGCG AGC CGGTGGGCACCGACGGCCGGTAC TTGGTCGCGGGTGTC TERM 1800 3444939 - 3444981 + g 75 -15.4 -2.78018 | overlap 3444936 CAGGATGTCGGTGAG CCGGCTGCGGGTGACCAGCG AGC CGGTGGGCACCGACGGCCGG TACTTGGTCGCGGGT TERM 1801 3446224 - 3446248 + G 95 -19.3 -2.85351 | CGGCGCGCCATTGGG GCGTGAGCGCG TCG CGCGCTCGCGC TATCCTGTCGAGCCG TERM 1802 3446683 - 3446712 + G 73 -11.3 -3.6682 | gap 1, overlap 3446684 CGTTTGCCGCCGTGT GGACGCCGGCGCCG TTC CGGCGCC-GCGGCA TTTACCTAGATCGCC TERM 1803 3446684 - 3446711 + G 72 -14.8 -2.79878 | gap 1, overlap 3446683 GTTTGCCGCCGTGTG GACGCCGGCGCCG TTC CGGCGCC-GCGGC ATTTACCTAGATCGC Rv3081 3446040 - 3447278 + | hypothetical protein virS 3448426 - 3447404 - | virulence-regulating transcriptional regulator VirS TERM 1804 3447942 - 3447931 - G 77 -7.2 -4.5442 | overlap 3447932 3447933 GTCGGAACGAGAAAA CGCG CGCC CGCG CCTGCGGTCCGCCCA Rv3083 3448504 - 3449991 + | monooxygenase TERM 1805 3450034 - 3450014 - g 73 -3.9 -4.58283 | GAACCTGCGCAAAAA CGTCATCCG GTC CGTATTACG TGGTGCCCGGCCACT lipR 3449997 - 3450923 + | acetyl-hydrolase/esterase LipR TERM 1806 3451080 - 3451056 - g 85 -13.5 -4.07687 | ACGGGCTGGCCAAAA CCGTGCGCCTG GCT CAAGCGCTCGG CGCGCAGGTGAAGTC TERM 1807 3451530 - 3451494 - g 74 -8.1 -4.25104 | gap 3, overlap 3451495 CCGGCGGCATCAAAA CCGCCGTCGCGCGCAACG CCAC CGT-G-GC-CGACGGCGA GGACCAGCAGACGTT Rv3085 3450920 - 3451750 + | short-chain type dehydrogenase/reductase adhD 3451781 - 3452887 + | zinc-type alcohol dehydrogenase AdhD TERM 1808 3454121 - 3454142 + G 72 -8.7 -4.07568 | gap 1 GCCGCGGTATCTCGG CCGCTGG-CG CGT CGACCAGTGG TTTTCCACCGGGCAG Rv3087 3452925 - 3454343 + | hypothetical protein Rv3088 3454340 - 3455764 + | hypothetical protein fadD13 3455761 - 3457272 + | chain-fatty-acid-CoA ligase TERM 1809 3458347 - 3458328 - g 71 -12.1 -3.29854 | opp_overlap 3458327 3458326 3458324, overlap 3458326 AAAACAGTGACAATA GCCGCCG TGGCAG CGGCGGC CGTGTTCTTCTTCTT Rv3090 3458211 - 3459098 + | hypothetical protein TERM 1810 3459672 - 3459623 - g 74 -14.9 -3.05384 | gap 1, opp_overlap 3459655 TTCTCCGCGACGGAA CTCGACGCCGAGGTCGGCTACAAG AAG CTGGTGACCGTCCTCGGCGGCG-G CGGGGGCGCGGGCTT TERM 1811 3460187 - 3460227 + G 84 -14 -3.96327 | gap 1, overlap 3460183 3460168 ATCGTCATCAGCGCC GACGGCGCGACACGCGACG TCAA CGTCGT-TGACGCGGCGTC TTTCTCGTCGGCCAT Rv3091 3459116 - 3460807 + | hypothetical protein Rv3092c 3461734 - 3460814 - | integral membrane protein Rv3093c 3462764 - 3461760 - | oxidoreductase TERM 1812 3461912 - 3461875 - G 77 -15.6 -3.06302 | gap 2 ACGACCGCGACGCAA TCGGCACCGGCATCCGCG TAGG CGCGGA-GCCGG-GCCGC CACTCGATCGGGGCT Rv3094c 3463891 - 3462761 - | hypothetical protein Rv3095 3463973 - 3464449 + | putative transcriptional regulatory protein Rv3096 3464547 - 3465686 + | hypothetical protein lipY 3467091 - 3465778 - | triacylglycerol lipase TERM 1813 3466944 - 3466931 - G 86 -9.5 -4.64861 | TGGCCGGAAAACAAA GCCGC GATC GCGGC TGACACCTCGTCCTC Rv3098c 3467662 - 3467210 - | hypothetical protein TERM 1814 3467462 - 3467448 - G 70 -2.1 -4.67353 | CGACCTACTGAAAAA GACGA GCAGA TCATC AACGCCGCAATGCGC TERM 1815 3468223 - 3468242 + r 78 -10 -4.00042 | overlap 3468213 AGCGAGAGCGTAGTC GCGCTGAT GTGA ATCGGCGC TTATTTGGTCGCAAC Rv3099c 3469264 - 3468413 - | hypothetical protein smpB 3469783 - 3469301 - | SsrA-binding protein TERM 1816 3469505 - 3469547 + g 72 -14.8 -2.78216 | opp_overlap 3469520, overlap 3469501 GACCAAGGTGTCGAT CTGGCGGCGATGCAACAGCA GTT TGCGGTTGCGTCGCGGCTCG TGGTTGGTCCAGCTG ftsX 3470679 - 3469786 - | putative cell division protein FTSX (septation component-transport integral membrane protein ABC transporter) ftsE 3471369 - 3470680 - | putative cell division ATP-binding protein FTSE (septation component-transport ATP-binding protein ABC transporter) Rv3103c 3471850 - 3471413 - | hypothetical protein Rv3104c 3472778 - 3471852 - | transmembrane protein prfB 3473904 - 3472768 - | peptide chain release factor 2 TERM 1817 3472954 - 3472971 + g 74 -10.5 -3.79678 | overlap 3472967 GCCGTCGGCCTTCAA CGCGTCG AGCT CGGCGCG TTCTTCTAAGCGCTT TERM 1818 3474790 - 3474816 + G 77 -12.3 -3.66844 | GACCGCGAACCCCGC CCGGGACACCG CCGCA TGGTGTTCCGG TTCTTGACCTCTCCG fprA 3474007 - 3475377 + | NADPH:adrenodoxin oxidoreductase FPRA (NADPH-ferredoxin reductase) agpS 3476961 - 3475378 - | alkyldihydroxyacetonephosphate synthase AgpS Rv3108 3477060 - 3477500 + | hypothetical protein TERM 1819 3478731 - 3478689 - g 73 -11.1 -3.64162 | ATTAAGCACGTTAAA GGCCGACCCGCATCTGGAG ATGCA CACCAGGGGCGGGTAAGCC GAACGAACAGTCGAT moaA1 3477649 - 3478728 + | molybdenum cofactor biosynthesis protein A moaB1 3478779 - 3479174 + | pterin-4-alpha-carbinolamine dehydratase MoaB1 TERM 1820 3479632 - 3479622 - g 70 -2.4 -4.66537 | opp_overlap 3479628 TGCTCCAAGAGAAAA GCGG CGG CCGG TCCGGAGTTTATCGC moaC 3479171 - 3479683 + | molybdenum cofactor biosynthesis protein C moaD1 3479700 - 3479951 + | molybdenum cofactor biosynthesis protein D Rv3113 3480074 - 3480742 + | phosphatase Rv3114 3480759 - 3481289 + | hypothetical protein Rv3115 3481451 - 3482698 + | transposase moeB2 3482776 - 3483945 + | molybdenum cofactor biosynthesis protein MoeB cysA3 3483974 - 3484807 + | thiosulfate sulfurtransferase CysA3 TERM 1821 3484881 - 3484870 - g 84 -5.8 -4.86385 | overlap 3484871 ACCTGGAAAAAGAAA CGGT GATC ACCG GCCGCGTAGTGGACG sseC1 3484809 - 3485111 + | hypothetical protein moaE1 3485132 - 3485575 + | molybdenum cofactor biosynthesis protein E Rv3120 3485572 - 3486174 + | hypothetical protein cyp141 3486509 - 3487711 + | cytochrome P450 141 Rv3122 3488089 - 3488559 + | hypothetical protein Rv3123 3488569 - 3489063 + | hypothetical protein Rv3124 3489506 - 3490375 + | transcriptional regulatory protein PPE49 3491651 - 3490476 - | PPE family protein Rv3126c 3492122 - 3491808 - | hypothetical protein Rv3127 3492147 - 3493181 + | hypothetical protein Rv3129 3494660 - 3494992 + | hypothetical protein tgs1 3496366 - 3494975 - | triacylglycerol synthase Rv3131 3496551 - 3497549 + | hypothetical protein devS 3499265 - 3497529 - | two component sensor histidine kinase DEVS devR 3499915 - 3499262 - | two component transcriptional regulatory protein DevR Rv3134c 3500749 - 3499943 - | hypothetical protein PPE50 3501334 - 3501732 + | PPE family protein TERM 1822 3502348 - 3502318 - g 73 -13.3 -3.24747 | gap 1, overlap 3502314 GCGGCAGACCACCAA CCCGGCCGGCCTGA CCGC TCAGGCCG-CCGCG GTCAGCCAGGCCACC PPE51 3501794 - 3502936 + | PPE family protein TERM 1823 3503546 - 3503582 + G 100 -19.4 -3.01791 | gap 1 GTCGAATCCGACGTG CGCCAGACGCTGGGCCG CGAC CGGCCCGGCGAC-GGCG TCTTGGGCGAGGAGT Rv3137 3503393 - 3504175 + | monophosphatase TERM 1824 3504259 - 3504225 - g 82 -12.8 -3.92178 | ACCATCGCAACCAAA CACTGGCACCGACTGC ACG ACAGCCGGATCCAGTG CGATGTATGTCCACG TERM 1825 3504679 - 3504663 - g 73 -9.4 -3.94002 | GACCAGGGAATCAAA GCCGTC GCGGT GACGGC CGGGTACATGTGTCC pflA 3504195 - 3505283 + | pyruvate formate lyase activating protein PflA TERM 1826 3505330 - 3505296 - f 71 -9.5 -3.77953 | gap 1, overlap 3505297 3505299 3505321 3505325 TGAACAACTTAACAA GCACCCCTATCTTACT CCGG AGTAAGATAGGG-TGG TCCGCTATCACCCCG TERM 1827 3505329 - 3505297 - f 70 -13 -2.86049 | gap 1, overlap 3505296 3505299 3505321 3505325 GAACAACTTAACAAG CACCCCTATCTTACT CCGG AGTAAGATAGGG-TG GTCCGCTATCACCCC TERM 1828 3506733 - 3506755 + G 71 -9 -3.87104 | overlap 3506734 GTACCGCGACCTGCG AGCCATCGGC GTC GCCGAGGGCG TTGTTGTCATCTAGA fadE24 3505363 - 3506769 + | acyl-CoA dehydrogenase FADE24 fadE23 3506790 - 3507995 + | acyl-CoA dehydrogenase FADE23 TERM 1829 3508010 - 3508051 + F 84 -17.5 -2.78463 | gap 1, opp_overlap 3507995 3508010 3508017, overlap 3508017 GCCTCGGCGAGCAGA CGTCAAAGCCCCCGAATTTC AGT GAAAT-CGGGGGCTTTTGCG TCTGCTGGCGCCCGT TERM 1830 3508051 - 3508010 - f 78 -15.3 -2.78384 | gap 1, opp_overlap 3508010 3508017, overlap 3507995 3508017 GCCTCGGCGAGCAGA CGTCAAAGCCCCCGAATTTC AGT GAAAT-CGGGGGCTTTTGCG TCTGCTGGCGCCCGT TERM 1831 3508044 - 3508017 - f 85 -15 -3.64599 | gap 1, opp_overlap 3508010 3508017, overlap 3507995 3508010 CGAGCAGACGTCAAA GCCCCCGAATTTC AGT GAAAT-CGGGGGC TTTTGCGTCTGCTGG TERM 1832 3508017 - 3508044 + F 100 -15 -4.24948 | gap 1, opp_overlap 3507995 3508017 3508010, overlap 3508010 CGAGCAGACGTCAAA GCCCCCGAATTTC AGT GAAAT-CGGGGGC TTTTGCGTCTGCTGG fadB4 3508095 - 3509066 + | NADPH quinone oxidoreductase Rv3142c 3509546 - 3509118 - | hypothetical protein Rv3143 3509654 - 3510055 + | response regulator PPE52 3511317 - 3510088 - | PPE family protein TERM 1833 3510389 - 3510366 - G 75 -13.9 -3.33261 | CTGGAACTTCCACAA CGGCTTCCG GTGGCG CGGAAGCCG CCGGCTCTGGCGCTC nuoA 3511682 - 3512068 + | NADH dehydrogenase subunit A nuoB 3512077 - 3512631 + | NADH dehydrogenase subunit B nuoC 3512628 - 3513338 + | NADH dehydrogenase subunit C nuoD 3513338 - 3514660 + | NADH dehydrogenase subunit D TERM 1834 3515352 - 3515320 - g 84 -16.9 -3.14344 | CAGCGTCCCGACGAA GGCCAGGGCGGTCCC GGC GCGCCCACCCTGGCC GGGCTGCAGGTGGCA nuoE 3514657 - 3515415 + | NADH dehydrogenase subunit E TERM 1835 3515578 - 3515535 - g 71 -9.6 -3.86015 | gap 1, overlap 3515536 CAGGCGTTGCAGAAA GCCCTGACGATGCCGCCCGAC GAC GT-GATCAGCATCGTCAAGGA TTCCGGGTTACGCGG nuoF 3515412 - 3516749 + | NADH dehydrogenase I chain F TERM 1836 3517536 - 3517497 - g 77 -16.4 -2.52464 | gap 1 GCTGCGCGCAACGCA CCGACCA-TCGCCGCGGCA AGG TGCTGCGGCGGCTGGCCGG TGACGACCCGGAAGT nuoG 3516746 - 3519166 + | NADH dehydrogenase subunit G nuoH 3519282 - 3520514 + | NADH dehydrogenase subunit H nuoI 3520507 - 3521142 + | NADH dehydrogenase subunit I nuoJ 3521139 - 3521927 + | NADH dehydrogenase subunit J TERM 1837 3522111 - 3522167 + G 70 -5.9 -4.18018 | gap 2 AGATGATCGCGTTCT TCACCATGGTGGTGGCC--GCCTGCGA AGTGG TCGTCGGCCTGGCCATCATCATGACGA TTTTCCGTACCCGCA nuoK 3521924 - 3522223 + | NADH dehydrogenase subunit K nuoL 3522234 - 3524135 + | NADH dehydrogenase subunit L nuoM 3524132 - 3525793 + | NADH dehydrogenase subunit M TERM 1838 3527146 - 3527196 + G 73 -14.7 -2.8474 | gap 1, overlap 3527142 3527143 GCCGCCGCTTCCGCC GGC-GCGGTGCCGCTGGTAATCGT CGGC GTGATCTCCAGCGGCGTCGCCGCC TACTTCTACGTGCGG nuoN 3525790 - 3527385 + | NADH dehydrogenase subunit N PPE53 3529163 - 3527391 - | PPE family protein TERM 1839 3528361 - 3528381 + g 72 -11.9 -3.59979 | opp_overlap 3528375 CCAAAGTTTCCGTTG CCGAGGTTT CCA AAGCCTCGG TTTCCGCTGCCCAGA Rv3160c 3529979 - 3529338 - | TetR family transcriptional regulator Rv3161c 3531138 - 3529990 - | dioxygenase TERM 1840 3531107 - 3531121 + g 70 -11.4 -3.43676 | opp_overlap 3531102, overlap 3531118 TCGGTAAGGATGTCT CCGAGC TCG GCTCGG TTATCAGTTGATAAC TERM 1841 3531118 - 3531166 + g 100 -21.5 -3.28712 | opp_overlap 3531102, overlap 3531107 GTCTCCGAGCTCGGC TCGGTTATCAGTTGATAACAT ACCCTCC ATGTTATCGACTGATAACCGA TTGTCAACAGCGCGC Rv3162c 3531645 - 3531208 - | integral membrane protein Rv3163c 3532913 - 3531642 - | hypothetical protein moxR3 3533905 - 3532943 - | methanol dehydrogenase transcriptional regulatory protein MoxR3 Rv3165c 3534395 - 3533913 - | hypothetical protein Rv3166c 3535351 - 3534392 - | hypothetical protein TERM 1842 3535228 - 3535201 - G 71 -14 -2.82156 | overlap 3535198 3535196 CGACAATGAACATCA GCGCCGCCCGGC TGCC GCCGGCCGCCGC GAGCGGTGCACCGTC Rv3167c 3536057 - 3535431 - | TetR family transcriptional regulator Rv3168 3536102 - 3537238 + | hypothetical protein TERM 1843 3537821 - 3537802 - g 74 -12.8 -3.50853 | overlap 3537803 GTGGGGGAACCAGAA CCGGCGGG CCGG CCCGCCGA CCCACCCTTCGAGGG Rv3169 3537238 - 3538362 + | hypothetical protein aofH 3538505 - 3539851 + | flavin-containing monoamine oxidase hpx 3540745 - 3539846 - | non-Heme haloperoxidase Hpx TERM 1844 3540606 - 3540624 + g 81 -12.4 -3.83026 | GCGATCACCCGGTAG TCGCCGGC CAG GTCGGCGA TTTGGTATGCCCAGG Rv3172c 3541364 - 3540882 - | hypothetical protein Rv3173c 3542045 - 3541443 - | TetR/ACRR family transcriptional regulator Rv3174 3542138 - 3542845 + | short chain dehydrogenase Rv3175 3542860 - 3544347 + | amidase mesT 3545300 - 3544344 - | epoxide hydrolase MesT Rv3177 3545447 - 3546307 + | peroxidase Rv3178 3546438 - 3546797 + | hypothetical protein Rv3179 3547618 - 3548907 + | hypothetical protein Rv3180c 3549688 - 3549254 - | hypothetical protein Rv3181c 3550143 - 3549691 - | hypothetical protein TERM 1845 3550170 - 3550203 + H 73 -8.7 -3.9712 | GCAACGGAAGGTGTT TGCCGTCCGCGCTGG GCCT TCGGCGCAGCTGGCA TTTGTGGTCAGCTGC Rv3182 3550374 - 3550718 + | hypothetical protein Rv3183 3550715 - 3551044 + | transcriptional regulatory protein TERM 1846 3551201 - 3551174 - f 100 -17 -4.25104 | opp_overlap 3551174 3551175, overlap 3551175 TCCCGCCCATGAAAA CGGCCCCCGGAG TCTC CTCCGAGGGCCA TTTCGCCGGTAGCGG TERM 1847 3551174 - 3551201 + F 77 -12.6 -3.55444 | opp_overlap 3551174 3551175, overlap 3551175 TCCCGCCCATGAAAA CGGCCCCCGGAG TCTC CTCCGAGGGCCA TTTCGCCGGTAGCGG TERM 1848 3551200 - 3551175 - f 91 -18.3 -3.14848 | opp_overlap 3551174 3551175, overlap 3551174 CCCGCCCATGAAAAC GGCCCCCGGAG TCTC CTCCGAGGGCC ATTTCGCCGGTAGCG TERM 1849 3551175 - 3551200 + F 81 -16.1 -2.73124 | opp_overlap 3551175 3551174, overlap 3551174 CCCGCCCATGAAAAC GGCCCCCGGAG TCTC CTCCGAGGGCC ATTTCGCCGGTAGCG Rv3184 3551281 - 3551607 + | transposase Rv3185 3551604 - 3552542 + | transposase Rv3186 3552764 - 3553090 + | transposase Rv3187 3553087 - 3554025 + | transposase TERM 1850 3554557 - 3554543 - g 71 -2.7 -4.62069 | overlap 3554544 3554545 GCTGCACGCCAAAAA CCGGC TCCTC GACGG GCAGCGCCCGGTTGA Rv3188 3554298 - 3554645 + | hypothetical protein Rv3189 3554642 - 3555262 + | hypothetical protein TERM 1851 3555386 - 3555402 + T 73 -11.5 -3.54424 | opp_overlap 3555379 CAACGGAATGGCCTA GCCGCCG TCG CGGTGGC TTTGCGCGACTGGGG Rv3190c 3556687 - 3555422 - | hypothetical protein TERM 1852 3556265 - 3556244 - G 70 -10.1 -3.72893 | opp_overlap 3556244 GATCTGCTTATGAAA CGCCGCG TTGATCGC CGCGGCG TCATTCGACAGATTG TERM 1853 3556491 - 3556479 - G 71 -9.1 -3.78775 | GCTGGCAGCATGAAA GCGTC GTC GACGC GCAGATCGGGGCATT Rv3191c 3558345 - 3557311 - | transposase TERM 1854 3559359 - 3559331 - H 100 -21.9 -4.2558 | opp_overlap 3559331 CATCGGGCATGAAAA TGACCCCAGAGGT CGC ACCTCTGGGGTCA TTTCCGCTGGTAGCG TERM 1855 3559331 - 3559359 + H 100 -21.9 -3.62096 | opp_overlap 3559331 CATCGGGCATGAAAA TGACCCCAGAGGT CGC ACCTCTGGGGTCA TTTCCGCTGGTAGCG TERM 1856 3559707 - 3559736 + G 72 -13.5 -3.14132 | overlap 3559702 CTTGAGCTGTCCACC GGGATCGCGTTGG CGTT CCCGCGCGGTCCC TTCGTCCCGGCAGCC Rv3192 3559563 - 3560024 + | hypothetical protein TERM 1857 3560166 - 3560125 - T 100 -24.7 -2.78816 | opp_overlap 3560125 3560132, overlap 3560132 GCACCCGTGAGCAGA CGCAGAAGTCCCCGATTTC CGGT GAAATCGGCGACTTCTGCG TCTGCTCGCCGCGAG TERM 1858 3560125 - 3560166 + T 100 -24.7 -2.78384 | opp_overlap 3560125 3560132, overlap 3560132 GCACCCGTGAGCAGA CGCAGAAGTCCCCGATTTC CGGT GAAATCGGCGACTTCTGCG TCTGCTCGCCGCGAG TERM 1859 3560132 - 3560159 + T 76 -12.8 -3.40299 | opp_overlap 3560125 3560132, overlap 3560125 TGAGCAGACGCAGAA GTCCCCGATTTC CGGT GAAATCGGCGAC TTCTGCGTCTGCTCG TERM 1860 3560159 - 3560132 - T 76 -12.8 -3.40299 | opp_overlap 3560132 3560125, overlap 3560125 TGAGCAGACGCAGAA GTCCCCGATTTC CGGT GAAATCGGCGAC TTCTGCGTCTGCTCG Rv3193c 3563172 - 3560194 - | hypothetical protein TERM 1861 3561526 - 3561511 - G 83 -4 -5.19328 | gap 1, overlap 3561512 3561513 ATTGGAGAACAAAAA GTTTCGC TCC GCGAA-C TTCGCAGCGAACACG TERM 1862 3563008 - 3562978 - G 71 -14 -2.84098 | overlap 3562975 CCCGGCAACCAAGCA CACCACGATGCGGG TAG CCAGCATGGTGGTG AACACTGAGCGGTAG Rv3194c 3564286 - 3563264 - | hypothetical protein Rv3195 3564364 - 3565782 + | hypothetical protein Rv3196 3565788 - 3566687 + | hypothetical protein TERM 1863 3566667 - 3566677 + T 82 -3.2 -5.10208 | CGACAATGGACCAGG CATC CGC GGTG TTTTTGTTGACGTTA Rv3196A 3566896 - 3566696 - | hypothetical protein TERM 1864 3568177 - 3568165 - g 70 -4.1 -4.52857 | AGTGGTTACAGAAAA TGACC GTC AGTCA GATCGACCGCTCGGT Rv3197 3567024 - 3568367 + | ABC transporter ATP-binding protein whiB7 3568679 - 3568401 - | transcriptional regulatory protein WHIB-like WHIB7 uvrD2 3571211 - 3569109 - | ATP-dependent DNA helicase II UVRD2 TERM 1865 3570396 - 3570382 - G 71 -9.2 -3.79519 | AAGTCGAGTAGGAAA CGAGGC GAA GCCCCG GTAAACGAGTAGATG Rv3198A 3571335 - 3571589 + | glutaredoxin protein nudC 3572543 - 3571602 - | NADH pyrophosphatase Rv3200c 3573669 - 3572602 - | transmembrane cation transporter TERM 1866 3573180 - 3573191 + g 72 -7.2 -4.20696 | overlap 3573178 CGTCACTGACCATCG CGGC CACC GCCG TTTTGCCCTTGGTGC Rv3201c 3577036 - 3573731 - | ATP-dependent DNA helicase Rv3202c 3580200 - 3577033 - | ATP-dependent DNA helicase TERM 1867 3577347 - 3577361 + g 72 -5.6 -4.34402 | CATCGTCCTTGCTGA CCGGTG TCT TGCCGG TTTTGATGTCGACGA TERM 1868 3581214 - 3581202 - g 71 -9.1 -3.85698 | opp_overlap 3581201 3581202 GCGGCCCTGGACAAA CGGCT AGG AGCCG ATTTTGAGCTACTAG lipV 3580638 - 3581312 + | lipase LipV Rv3204 3581315 - 3581620 + | DNA-methyltransferase (modification methylase) Rv3205c 3582505 - 3581627 - | hypothetical protein moeB1 3583710 - 3582532 - | molybdopterin biosynthesis-like protein MoeZ Rv3207c 3584658 - 3583801 - | hypothetical protein Rv3208 3585004 - 3585690 + | TetR family transcriptional regulator TB9.4 3585949 - 3585677 - | hypothetical protein Rv3209 3586274 - 3586834 + | hypothetical protein Rv3210c 3587539 - 3586844 - | hypothetical protein rhlE 3587798 - 3589381 + | ATP-dependent RNA helicase RhlE TERM 1869 3589443 - 3589474 + G 73 -13 -3.29471 | gap 1, opp_overlap 3589420, overlap 3589447 TCGCGGCCGCCGCGA CGATCGCGGTCGTGG TGG CCGTGGCCGCG-TCG TTGATCTGGTGGACC TERM 1870 3589803 - 3589859 + G 79 -2.1 -5.00616 | gap 2, overlap 3589850 TCAGCACCATCGATG GATCCACCGGTCG--CCGGGGAGCCGC CCGCA GCGGCTACGCGGATCCGCGGGTGCGTC TTTTTTCCGACGGCA Rv3212 3589394 - 3590617 + | hypothetical protein TERM 1871 3590641 - 3590682 + T 100 -25.5 -2.88544 | gap 1, opp_overlap 3590641 3590648, overlap 3590648 GTTGGCGCGAGCAGA CGCAAAATCGCCCGAAA-CC GAT GGCTTTCGGGCGATTTTGCG TCTGTCGCGCTACAG TERM 1872 3590682 - 3590641 - T 100 -25.5 -2.78384 | gap 1, opp_overlap 3590641 3590648, overlap 3590648 GTTGGCGCGAGCAGA CGCAAAATCGCCCGAAA-CC GAT GGCTTTCGGGCGATTTTGCG TCTGTCGCGCTACAG TERM 1873 3590648 - 3590675 + T 100 -15 -4.26188 | gap 1, opp_overlap 3590641 3590648, overlap 3590641 CGAGCAGACGCAAAA TCGCCCGAAA-CC GAT GGCTTTCGGGCGA TTTTGCGTCTGTCGC TERM 1874 3590675 - 3590648 - T 100 -15 -4.24948 | gap 1, opp_overlap 3590648 3590641, overlap 3590641 CGAGCAGACGCAAAA TCGCCCGAAA-CC GAT GGCTTTCGGGCGA TTTTGCGTCTGTCGC Rv3213c 3591492 - 3590692 - | SOJ/PARA-like protein gpm2 3591646 - 3592257 + | acid phosphatase TERM 1875 3593156 - 3593121 - g 73 -6 -4.36914 | GGGGTCCCGACAAAA GCTGCCACCGAGCTCA TCGC CGAACTCGAGGGCGAC CGTGGCTTCTACGCC entC 3592254 - 3593372 + | isochorismate synthase Rv3216 3593520 - 3593852 + | acetyltransferase Rv3217c 3594235 - 3593804 - | integral membrane protein Rv3218 3594468 - 3595433 + | hypothetical protein whiB1 3595713 - 3595967 + | transcriptional regulatory protein WHIB-like WHIB1 TERM 1876 3595983 - 3596016 + T 100 -28.3 -3.05596 | opp_overlap 3596001, overlap 3595985 CGACTCAGTTCTGCA CAGTGCGGCCCCGAC ATAC GTCGGGGCCGCACTG TTGCGTAGCGCGCTA TERM 1877 3595985 - 3596014 + T 100 -25.1 -3.08679 | opp_overlap 3596001, overlap 3595983 ACTCAGTTCTGCACA GTGCGGCCCCGAC ATAC GTCGGGGCCGCAC TGTTGCGTAGCGCGC Rv3220c 3597534 - 3596029 - | two component sensor kinase TB7.3 3597766 - 3597551 - | putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit Rv3221A 3598356 - 3598051 - | anti-sigma factor Rv3222c 3598904 - 3598353 - | hypothetical protein sigH 3599551 - 3598901 - | RNA polymerase sigma factor RpoE Rv3224 3599851 - 3600699 + | short chain dehydrogenase Rv3224A 3600635 - 3600823 + | hypothetical protein Rv3224B 3600801 - 3601019 + | hypothetical protein Rv3225c 3602440 - 3601016 - | transferase Rv3226c 3603322 - 3602564 - | hypothetical protein aroA 3603377 - 3604729 + | 3-phosphoshikimate 1-carboxyvinyltransferase Rv3228 3604726 - 3605718 + | hypothetical protein Rv3229c 3607034 - 3605751 - | linoleoyl-CoA desaturase Rv3230c 3608254 - 3607112 - | oxidoreductase TERM 1878 3608323 - 3608293 - R 89 -12.6 -4.15044 | opp_overlap 3608297 3608302 CTTCCGCCCAACAAA GCTACGGTACCGTA ACC TACGGTTCCGTATC TAGGCCCGGACGCGC Rv3231c 3608873 - 3608364 - | hypothetical protein pvdS 3609757 - 3608870 - | transcriptional regulatory protein PvdS Rv3233c 3610371 - 3609781 - | hypothetical protein Rv3234c 3611189 - 3610374 - | hypothetical protein TERM 1879 3611777 - 3611759 - g 79 -11.6 -3.7732 | overlap 3611756 GCCGGACACCAACAA GGCGCGGC CAT GCTGCGCC GCATCCGGCTGACAC Rv3235 3611300 - 3611941 + | hypothetical protein Rv3236c 3613116 - 3611959 - | integral membrane transport protein TERM 1880 3612816 - 3612789 - G 70 -6.3 -4.19238 | gap 1 CGTCCAACCCCAAAA GCCA-GCCCG CCACCGCAC CGGGCGTGGC GTTGAGGACGATATC Rv3237c 3613603 - 3613121 - | hypothetical protein Rv3238c 3614398 - 3613664 - | integral membrane protein TERM 1881 3614123 - 3614111 - G 71 -9.1 -3.78778 | CCAGTACAGCAACAA CAGCG CAA CGCTG GCCAGCAGTACATAG Rv3239c 3617603 - 3614457 - | transmembrane transport protein TERM 1882 3616746 - 3616726 - G 77 -3.9 -4.79223 | overlap 3616727 3616728 CCATAGCAGTAAAAA CCCGCTG CGGCGAC CAGCGTG AGCAGGTTGCCCGCC TERM 1883 3617109 - 3617063 - G 73 -13.7 -3.17527 | overlap 3617061 CATTGACCAGTAACA CCCACCG-CCAGCCGGCCCACTC CAC GAG-GAGCCCGCCGATCGGCGGG CCCAGGCCAGCCGCG TERM 1884 3617556 - 3617531 - G 73 -12.5 -3.44051 | overlap 3617506 3617532 3617545 CCGCTACCAGCAGAA CCGACGCCGAC GAAG GTCGGCGACGA CGGGTGAGATTAGCG secA1 3620531 - 3617682 - | preprotein translocase subunit SecA TERM 1885 3617762 - 3617785 + g 78 -15.2 -3.23393 | overlap 3617761 GCTCGCGCCGGCTAG CACCGGCCGG CACT CCGGCCGGCG TCTTGTGGGCTCCAC Rv3241c 3621254 - 3620610 - | hypothetical protein TERM 1886 3620778 - 3620836 + g 72 -14.5 -2.73994 | gap 1, opp_overlap 3620780, overlap 3620781 TTCTTTGGTGCGAAC GATCCGCCCAGGCTCCCGCTCGACGACG GCAC CGTCGT-GATCGTGTGCCTCGGCTGGTC TGGTGTTGAAGCCGT Rv3242c 3622211 - 3621570 - | hypothetical protein Rv3243c 3623091 - 3622249 - | hypothetical protein lpqB 3624910 - 3623159 - | lipoprotein LpqB mtrB 3626613 - 3624910 - | two component sensory transduction histidine kinase MTRB mtrA 3627349 - 3626663 - | two component sensory transduction transcriptional regulatory protein MTRA tmk 3628063 - 3627419 - | thymidylate kinase TERM 1887 3627713 - 3627731 + g 75 -7.3 -4.34402 | opp_overlap 3627710 CCGCTGAACCCAGGC CGCTGCC TTCCC GGCCGCG TTTTCATGTAGGCGC TERM 1888 3628096 - 3628137 + r 91 -20.5 -2.78816 | gap 1, opp_overlap 3628096 3628103, overlap 3628103 GGCGGCGCGAGCAGA CGCAAAATCGCCC-TTTTCG TCA TGAAAATGGGCGATTTTGCG TCTGCTCGCGGGTGG TERM 1889 3628137 - 3628096 - R 90 -19.8 -2.78384 | gap 1, opp_overlap 3628096 3628103, overlap 3628103 GGCGGCGCGAGCAGA CGCAAAATCGCCC-TTTTC GTCAT GAAAATGGGCGATTTTGCG TCTGCTCGCGGGTGG TERM 1890 3628103 - 3628130 + r 85 -10 -4.24948 | gap 1, opp_overlap 3628096 3628103, overlap 3628096 CGAGCAGACGCAAAA TCGCCC-TTTTCG TCA TGAAAATGGGCGA TTTTGCGTCTGCTCG TERM 1891 3628130 - 3628103 - R 83 -9.3 -4.24948 | gap 1, opp_overlap 3628103 3628096, overlap 3628096 CGAGCAGACGCAAAA TCGCCC-TTTTC GTCAT GAAAATGGGCGA TTTTGCGTCTGCTCG sahH 3629647 - 3628160 - | S-adenosyl-L-homocysteine hydrolase Rv3249c 3630387 - 3629752 - | TetR family transcriptional regulator rubB 3630566 - 3630384 - | rubredoxin RubB rubA 3630738 - 3630571 - | rubredoxin RUBA alkB 3631988 - 3630738 - | transmembrane alkane 1-monooxygenase AlkB Rv3253c 3633584 - 3632097 - | cationic amino acid transport integral membrane protein TERM 1892 3633332 - 3633304 - G 72 -14.5 -2.67713 | overlap 3633301 3633300 GCATAAGAGAAGGTA TAGGCGCTGCCGG CCA CCGGCAGCGTCGA GGCGAACTCGGCGTA TERM 1893 3634739 - 3634725 - g 71 -9.2 -3.76968 | AACTCAGCTATGAAA GGCGAC CTG GCCGCC GAACTCAATCGGGCC Rv3254 3633675 - 3635063 + | hypothetical protein manA 3636267 - 3635041 - | mannose-6-phosphate isomerase Rv3256c 3637315 - 3636275 - | hypothetical protein manB 3638709 - 3637312 - | phosphomannomutase/phosphoglucomutase TERM 1894 3638122 - 3638104 - G 79 -13.2 -3.66286 | overlap 3638092 ATACGAGGGCAACAA GGTGATCG AGT CGATCACC CCAAGGACCGCCGGC Rv3258c 3639302 - 3638811 - | hypothetical protein Rv3259 3639425 - 3639844 + | hypothetical protein whiB2 3640141 - 3639872 - | transcriptional regulatory protein WHIB-like WHIB2 TERM 1895 3641154 - 3641118 - g 81 -10.7 -4.07568 | overlap 3641141 TGTCGGCGCTGAAAA GTCCAGCGCTGCAACCG AAG CGATCGCCGCCCTGGCC GACGCCGACATCATC fbiA 3640543 - 3641538 + | LPPG:FO 2-phospho-L-lactate transferase TERM 1896 3641635 - 3641673 + G 87 -18.8 -2.70932 | TGAGCGCCGCCGTCG CCGCGGCGGCACCGTGGC TAC GCGACGGTGACGTCGTGG TGGTTACCAGCAAGG fbiB 3641535 - 3642881 + | F420-0--gamma-glutamyl ligase TERM 1897 3643491 - 3643467 - g 77 -5.6 -4.62069 | GCGCGAGGCGAAAAA GTCGCGGGAC TTCGC GTCCGTCGAC ACTGAGAACCTTTTT Rv3263 3643177 - 3644838 + | DNA methylase (modification methylase) (methyltransferase) manB 3645977 - 3644898 - | D-alpha-D-mannose-1-phosphate guanylyltransferase MANB (D-alpha-D-heptose-1-phosphate guanylyltransferase) wbbL1 3646884 - 3645979 - | dTDP-RHA:A-D-GlcNAc-diphosphoryl polyprenol TERM 1898 3646550 - 3646521 - G 77 -16.3 -2.70932 | CGGGGTCCCGAATCA GCGGGCCCAGCGC GCCC GCGCGGGGCCAGC GGGAGGCGGCGTCCA rmlD 3647809 - 3646895 - | dTDP-6-deoxy-L-lyxo-4-hexulose reductase RmlD Rv3267 3647885 - 3649381 + | hypothetical protein Rv3268 3649420 - 3650109 + | hypothetical protein Rv3269 3650234 - 3650515 + | hypothetical protein ctpC 3650526 - 3652682 + | metal cation-transporting P-type ATPase C CtpC Rv3271c 3653347 - 3652679 - | integral membrane protein TERM 1899 3653075 - 3653037 - G 79 -7.2 -4.65895 | overlap 3653042 GCCGTCAGCCAAAAA GACACCGCAACTCCACGC TGT GCGCGGTGCTCCGCGGTC GCGGACCAAGTGCGG Rv3272 3653448 - 3654632 + | hypothetical protein Rv3273 3654637 - 3656931 + | transmembrane carbonic anhydrase fadE25 3658089 - 3656920 - | acyl-CoA dehydrogenase FADE25 purE 3658638 - 3658114 - | phosphoribosylaminoimidazole carboxylase catalytic subunit purK 3659924 - 3658635 - | phosphoribosylaminoimidazole carboxylase ATPase subunit Rv3277 3659878 - 3660696 + | transmembrane protein Rv3278c 3661169 - 3660651 - | transmembrane protein birA 3662012 - 3661212 - | biotin--protein ligase TERM 1900 3662384 - 3662335 - g 84 -9.1 -4.57341 | gap 1 AATCTCGGTGAAAAA CGCCCGCTCGGCGACGGCGTGGTC ACC GGCTACGGCACCATCGA-CGGGCG CGACGTGTGCATCTT accD5 3662062 - 3663708 + | propionyl-CoA carboxylase beta chain Rv3281 3663689 - 3664222 + | hypothetical protein maf 3664219 - 3664887 + | Maf-like protein sseA 3664928 - 3665821 + | thiosulfate sulfurtransferase SseA TERM 1901 3665983 - 3665994 + G 70 -2.2 -4.59773 | CCGGTCCCCGAGTGC CAGT CTCC GCTG TTTTTGCACGTCGAC Rv3284 3665818 - 3666249 + | hypothetical protein TERM 1902 3666329 - 3666319 - f 74 -5.4 -4.65078 | overlap 3666321 AGACTTGTAAGAAAA TCTC TTA GAGA CGAAGAATCAGCCCG accA3 3666357 - 3668159 + | bifunctional acetyl-/propionyl-coenzyme A carboxylase subunit alpha sigF 3668954 - 3668169 - | RNA polymerase sigma factor SigF rsbW 3669388 - 3668951 - | anti-sigma factor rsbW (sigma negative effector) usfY 3669999 - 3669586 - | hypothetical protein Rv3289c 3670411 - 3670034 - | transmembrane protein lat 3671794 - 3670445 - | L-lysine aminotransferase TERM 1903 3671077 - 3671039 - G 78 -5.9 -4.66609 | gap 1, opp_overlap 3671040, overlap 3671040 CATCGCAGCGAAAAA CTCC-GGGCGGAAATGGC GGTC GCCACCCTCGCCCTGGAT GGGTTCGGCCACAAA Rv3291c 3672297 - 3671845 - | AsnC family transcriptional regulator TERM 1904 3672879 - 3672894 + G 75 -11.8 -3.63627 | ACCGGCTTTCGTCGC CGCGGC GGTG GCCGCG TTTGCGCTGTCGCGG Rv3292 3672328 - 3673575 + | hypothetical protein pcd 3673602 - 3675086 + | piperideine-6-carboxilic acid dehydrogenase Rv3294c 3675995 - 3675186 - | hypothetical protein TERM 1905 3675812 - 3675863 + g 77 -13.1 -3.57561 | gap 1, overlap 3675816 3675821 CGGCGATGCGTTGGA GATTGGAGACGTCGGCCGCGTC ACGTTTGAC GACGCGGTCGACGT-TCCTAGC TTTCGCCGATTCGCG TERM 1906 3675816 - 3675859 + g 80 -16.9 -2.64651 | gap 1, overlap 3675812 3675821 GATGCGTTGGAGATT GGAGACGTCGGCCGCGTC ACGTTTGAC GACGCGGTCGACGT-TCC TAGCTTTCGCCGATT TERM 1907 3675821 - 3675855 + g 82 -16.5 -3.25088 | overlap 3675816 3675812 GTTGGAGATTGGAGA CGTCGGCCGCGTC ACGTTTGAC GACGCGGTCGACG TTCCTAGCTTTCGCC TERM 1908 3676402 - 3676374 - g 82 -6.6 -4.73613 | gap 1, opp_overlap 3676391, overlap 3676375 3676376 CTACCACCAACAAAA CCCCG-AGGCGGC GTGG GCCGCCTACGTCG GCCTCGGCCGATCGG Rv3295 3676066 - 3676731 + | TetR family transcriptional regulator TERM 1909 3677784 - 3677736 - g 71 -15.2 -2.62184 | gap 1 CCCCGGCGCACATCA TGGGCTCGGGCCAG-ACGTTCGG AGCG CCGCCGGTGCTGGCCCGCGCCCA CCATGGCTCGATCAG TERM 1910 3679109 - 3679157 + G 72 -14.4 -3.04144 | gap 1 CTGCCCCGCCGGCAC CCCGGCCGCCGCTC-GCCGCTGT GGCA GCAGCGGCAGCGCGCCGCCCGGC TGTTGGAAGTGGCCC lhr 3676775 - 3681316 + | ATP-dependent helicase nei 3681320 - 3682087 + | endonuclease VIII lpqC 3683024 - 3682110 - | esterase lipoprotein LpqC atsB 3685963 - 3683051 - | arylsulfatase AtsB Rv3300c 3686900 - 3685983 - | hypothetical protein phoY1 3687577 - 3686912 - | phosphate transporter PhoU glpD2 3689442 - 3687685 - | glycerol-3-phosphate dehydrogenase lpdA 3690938 - 3689457 - | flavoprotein disulfide reductase Rv3304 3691141 - 3691620 + | hypothetical protein amiA1 3692808 - 3691639 - | N-acyl-L-amino acid amidohydrolase amiB1 3693989 - 3692805 - | amidohydrolase AmiB1 deoD 3694054 - 3694860 + | purine nucleoside phosphorylase TERM 1911 3695093 - 3695136 + G 78 -13.8 -3.57144 | gap 1 GAGGTCTGGCTGGTT CGCCGGTGA-TCGTGGGGCGC GAC GCTCGGCACGGCTCACCGGCG TTTGCCGCTGCGGCC TERM 1912 3695161 - 3695174 + G 75 -4.5 -4.68994 | overlap 3695144 3695167 GCGGCCGCCGAAGTG CTTGC CGCC GCAGG TTTTTCCGTGCTGCT pmmB 3694864 - 3696468 + | phosphomannomutase upp 3697093 - 3696470 - | uracil phosphoribosyltransferase Rv3310 3697198 - 3698097 + | acid phosphatase Rv3311 3698121 - 3699383 + | hypothetical protein Rv3312c 3700330 - 3699404 - | hypothetical protein TERM 1913 3700745 - 3700702 - R 87 -18.8 -2.70932 | gap 1 CGGCCCGGTCAACGA GCGCTATGC-GCCGCCACCGG CAG CCGGGGGCGGCGGCGCAGCAC CGGGATCGTCAAGCA Rv3312A 3701016 - 3700705 - | secreted protein antigen TERM 1914 3701109 - 3701123 + r 73 -12.8 -3.22884 | CTGTGACCCATGAGC GCCGCG AAC CGCGGC TTGATCACTTCGTCG add 3702184 - 3701087 - | adenosine deaminase deoA 3703467 - 3702184 - | thymidine phosphorylase cdd 3703865 - 3703464 - | cytidine deaminase TERM 1915 3704251 - 3704276 + G 70 -2.4 -4.57569 | GATCGTCGGCCTGAT GGAGTACGGC CTAGTC GCCGCGGTCC TTTTTCACGCACTGA sdhC 3704102 - 3704440 + | succinate dehydrogenase cytochrome B-556 subunit sdhD 3704437 - 3704871 + | succinate dehydrogenase hydrophobic membrane anchor subunit SdhD sdhA 3705000 - 3706772 + | succinate dehydrogenase flavoprotein subunit sdhB 3706772 - 3707563 + | succinate dehydrogenase iron-sulfur subunit TERM 1916 3707581 - 3707622 + T 100 -24.1 -2.78384 | gap 1, opp_overlap 3707581 3707588, overlap 3707588 GCTTGCGCGAGCAGA CGCAAAATCGCCCGAAAACC AGT GGTTTT-GGGCGATTTTGCG TCTGCTCGCGCAGCC TERM 1917 3707622 - 3707581 - T 100 -24.1 -2.78384 | gap 1, opp_overlap 3707581 3707588, overlap 3707588 GCTTGCGCGAGCAGA CGCAAAATCGCCCGAAAACC AGT GGTTTT-GGGCGATTTTGCG TCTGCTCGCGCAGCC TERM 1918 3707588 - 3707615 + T 100 -13.6 -4.24948 | gap 1, opp_overlap 3707581 3707588, overlap 3707581 CGAGCAGACGCAAAA TCGCCCGAAAACC AGT GGTTTT-GGGCGA TTTTGCGTCTGCTCG TERM 1919 3707615 - 3707588 - T 100 -13.6 -4.24948 | gap 1, opp_overlap 3707588 3707581, overlap 3707581 CGAGCAGACGCAAAA TCGCCCGAAAACC AGT GGTTTT-GGGCGA TTTTGCGTCTGCTCG Rv3320c 3708070 - 3707642 - | hypothetical protein Rv3321c 3708316 - 3708074 - | hypothetical protein Rv3322c 3709052 - 3708438 - | methyltransferase TERM 1920 3708738 - 3708687 - G 75 -9.5 -4.13767 | gap 2, overlap 3708689 CGCCGCATCCCAAAA GAGCCTGCTGAGCACCAGCGCGAAA CGCG TCTCGC-CGGGTTCCCAGCAG-CCC AAGTCGGCCTGCACG TERM 1921 3708737 - 3708689 - G 73 -11 -3.6692 | gap 1, overlap 3708687 CCGCATCCCAAAAGA GCCTGCTGAGCACCAGCGCGAAA CGCG TCTCGC-CGGGTTCCCAGCAGCC CAAGTCGGCCTGCAC moaX 3709714 - 3709049 - | MOAD-MOAE fusion protein MOAX moaC 3710269 - 3709715 - | molybdenum cofactor biosynthesis protein C TERM 1922 3709787 - 3709797 + g 83 -2.4 -5.15634 | CCGGTAATGACCCGA TCGG CCA CCGC TTTTTTCGTCCAATC Rv3325 3710433 - 3710759 + | transposase Rv3326 3710756 - 3711694 + | transposase TERM 1923 3712280 - 3712303 + GT 70 -12.4 -3.14344 | opp_overlap 3712264 CAGCAGGCCCTGCGG ACCTGGCTGG ACAC CCAGCCAGGA TTGGTCGCCGAACTC TERM 1924 3712509 - 3712494 - gT 76 -9 -4.08216 | TGACCCGGTTCAAAA GCGAAG CCGC CTTCGC CTGCCATGCCGCAGT sigJ 3714332 - 3713394 - | RNA polymerase sigma factor SigJ Rv3327 3711749 - 3713461 + | transposase TERM 1925 3714645 - 3714667 + G 74 -5.5 -4.56597 | opp_overlap 3714662 GCCTGGCCCGCTACG CGCCCGG GGACCTAAA CCGGGTG TTTTTCACCAGCGGC TERM 1926 3714979 - 3714994 + G 77 -6.8 -4.57073 | overlap 3714951 GTTCGAAGGCCCCGA CACCGT GGCC GCGGTG TTTTTGGAGCCGGTG TERM 1927 3715030 - 3715044 + G 82 -12.8 -3.90922 | opp_overlap 3715015 3715016 CGCGGGCGGCTGCAT CCCGGC GCC GCCGGG TTATTTCGAACGGGT TERM 1928 3715422 - 3715455 + G 74 -7.4 -4.16842 | gap 1, overlap 3715424 AGAAACTGTACGACC TGCCCATCGTCGGCG ACATC CGC-GGCGAGGGGTA TTTCTTCGGCATCGA Rv3329 3714392 - 3715708 + | hypothetical protein dacB1 3715777 - 3716994 + | penicillin-binding protein DacB1 sugI 3717090 - 3718598 + | sugar-transport integral membrane protein SugI nagA 3718595 - 3719746 + | N-acetylglucosamine-6-phosphate deacetylase Rv3333c 3720782 - 3719937 - | hypothetical protein TERM 1929 3721682 - 3721648 - g 72 -11.6 -3.55444 | overlap 3721649 GTTGGATCCTGGAAA GC-GACCTCGATGAGC CCACC GC-CATCGAGGTCAGC GACATTCACGCCTAG Rv3334 3721257 - 3721697 + | MerR family transcriptional regulator Rv3335c 3722600 - 3721731 - | integral membrane protein trpS 3723631 - 3722621 - | tryptophanyl-tRNA synthetase TERM 1930 3723693 - 3723712 + GH 71 -8.6 -3.84266 | gap 1, overlap 3723693 GTCACCACGCTGCTT G-CGGTACC GGC GGTACCGGC TTTAGTGTCGGCTCT TERM 1931 3723890 - 3723901 + GH 70 -3.6 -4.46212 | opp_overlap 3723877, overlap 3723877 AACGGCGGACCGGCC TCGG GCAC CCGG TTTTGTCCTCGGCGG Rv3337 3723656 - 3724042 + | hypothetical protein Rv3338 3723904 - 3724548 + | hypothetical protein TERM 1932 3724604 - 3724563 - T 100 -24.1 -2.78384 | gap 1, opp_overlap 3724563 3724570, overlap 3724570 GCGGGCGCGAGCAGA CGCAAAATCGCCC-ATTTCG GCA CGAAATTGGGCGATTTTGCG TCTGCTCGCCCTAAT TERM 1933 3724563 - 3724604 + T 100 -24.1 -2.79302 | gap 1, opp_overlap 3724563 3724570, overlap 3724570 GCGGGCGCGAGCAGA CGCAAAATCGCCC-ATTTCG GCA CGAAATTGGGCGATTTTGCG TCTGCTCGCCCTAAT TERM 1934 3724570 - 3724597 + T 100 -13.6 -4.24948 | gap 1, opp_overlap 3724563 3724570, overlap 3724563 CGAGCAGACGCAAAA TCGCCC-ATTTCG GCA CGAAATTGGGCGA TTTTGCGTCTGCTCG TERM 1935 3724597 - 3724570 - T 100 -13.6 -4.24948 | gap 1, opp_overlap 3724570 3724563, overlap 3724563 CGAGCAGACGCAAAA TCGCCC-ATTTCG GCA CGAAATTGGGCGA TTTTGCGTCTGCTCG icd1 3725844 - 3724615 - | isocitrate dehydrogenase metC 3726127 - 3727476 + | O-acetylhomoserine aminocarboxypropyltransferase metX 3727488 - 3728627 + | homoserine O-acetyltransferase TERM 1936 3728965 - 3728995 + G 74 -14.7 -3.05384 | overlap 3728967 GCACTGGGTGGATCC CGCCCGGGCGATT CCGGA GGTCGCCCGGGTG TTGCGTCCGGGCGGG TERM 1937 3728967 - 3728993 + G 73 -13.7 -3.08679 | overlap 3728965 ACTGGGTGGATCCCG CCCGGGCGATT CCGGA GGTCGCCCGGG TGTTGCGTCCGGGCG TERM 1938 3729289 - 3729249 - g 72 -6.8 -4.25283 | gap 2 AGGTCCGCACCAAAA CGCTCGACCGGGTGCGGCAG TTG CTGGC-CACCCATCCG-GCG CTGGCGAATAGCAAC Rv3342 3728624 - 3729355 + | methyltransferase (methylase) PPE54 3736935 - 3729364 - | PPE family protein TERM 1939 3734176 - 3734164 - G 70 -2.6 -4.67697 | CCCGAAAAGAACAAA CGCG GGATT CACG TGAAAACCCTCGAGG TERM 1940 3736474 - 3736435 - G 79 -13.4 -3.6502 | opp_overlap 3736440 CAGCGGCGAGCCAAA CGGCGCCAACGCCTCGGC CGCC GCCGAGGCGCCGGTGTGG TACCCCAGCATCGCG TERM 1941 3736440 - 3736469 + g 72 -14.9 -2.78384 | opp_overlap 3736435 GCGAGCCAAACGGCG CCAACGCCTCGGC CGCC GCCGAGGCGCCGG TGTGGTACCCCAGCA TERM 1942 3736837 - 3736805 - G 78 -14.2 -3.61178 | gap 2 GTCACCGACCCGAAA GCCGCCGCCGCCGAGC CCA GCTCGGCGGC--CAGC TCATCCCAGGCCGCG PE_PGRS49 3738438 - 3736984 - | PE-PGRS family protein TERM 1943 3737505 - 3737467 - GR 100 -15.8 -4.56597 | opp_overlap 3737473, overlap 3737469 CTTGCCGCCGAAAAA GCCGCTGCCGCCGGCGCC GCC GGCGCCGCCGCCACCGCC GCTGCCGCCTTGGGT TERM 1944 3737503 - 3737469 - GR 83 -17 -2.60032 | opp_overlap 3737473, overlap 3737467 TGCCGCCGAAAAAGC CGCTGCCGCCGGCGCC GCC GGCGCCGCCGCCACCG CCGCTGCCGCCTTGG TERM 1945 3738055 - 3738000 - GR 78 -15.8 -2.70932 | CCTTGCCGCCAAGCA CGACGCCGGTGCCGCCGGCGCCGCCG TTGC CGCCGTTGCCGCCGGCGCCGCCGCCA ATGCCGCTGCCGCTG TERM 1946 3738135 - 3738187 + gr 73 -12.7 -3.14132 | gap 3 CCGTGTCGCCGCTGC CGCCGGCGC-CGCCGTGGC--CGCCG TTAC CGGCGTTGCCACCGCGAGCGTTGCCG TTGCTGGAACCGCCG PE_PGRS50 3742774 - 3738158 - | PE-PGRS family protein TERM 1947 3738990 - 3739035 + gr 100 -11.7 -4.30576 | overlap 3738991 TTGAGGCCAGTGCCC CCATTACCGCCGGCACCACCG GAGC CGGCGTTGCCGGTGGTCGTGC TTTTGCTGCTACCGC TERM 1948 3738991 - 3739034 + gr 83 -15.2 -3.18024 | overlap 3738990 TGAGGCCAGTGCCCC CATTACCGCCGGCACCACCG GAGC CGGCGTTGCCGGTGGTCGTG CTTTTGCTGCTACCG TERM 1949 3739560 - 3739520 - GR 76 -11.1 -3.74519 | gap 2 AACACCGCTAGCAAA GTCGCCC--GCGCCGCCGG GACCG CCGGCGCCGCCTGGGCCAC CCAACCCGGTGCTAG TERM 1950 3739954 - 3740012 + gr 88 -15 -3.74693 | opp_overlap 3739937 CGGTGCCGGCCTTGC CTCCGGTGCCGCCGACGCCGGCGTTGCC GCC GTTGCCGCCGTTGCCGCCGGTACCGGGG TTTCCTACGGTGCCG TERM 1951 3740258 - 3740272 + gr 70 -12.8 -2.87132 | GTTAGCATTGGGGCC GGCGCC GTC GGCGCC TCTCTCGCCGGCGCC TERM 1952 3741022 - 3741032 + gr 79 -8.2 -4.36914 | overlap 3741007 3741007 3741023 GGCCGCCGTTACCAC CGGC GCC GCCG TTTTCTCCCGCGACG TERM 1953 3741590 - 3741604 + gr 74 -12.8 -3.3164 | ATGACCGCCATTACC GCCGGC CCC GCCGGC TTGTAGGGGTGAGTT TERM 1954 3742120 - 3742067 - GR 100 -16.5 -4.03234 | overlap 3742068 GTTGCCGTAGACAAA TCCGCCGGACCCGCCGACGCCACCA TTGG TGCCGGCGCCGCCGGACCCGCCGGC CCCGAACAACCAGGC TERM 1955 3742119 - 3742068 - GR 100 -20 -3.01726 | overlap 3742067 TTGCCGTAGACAAAT CCGCCGGACCCGCCGACGCCACCA TTGG TGCCGGCGCCGCCGGACCCGCCGG CCCCGAACAACCAGG TERM 1956 3742182 - 3742130 - GR 77 -13.2 -3.61398 | gap 1, overlap 3742133 GCCGGCCCCGAACAA CCAGGCGTTGCCGCCGGCACCACCG TTAG CGCCGGTCCCGCCGGCCCCGCC-GG CCCCGCCGTTGCCGT TERM 1957 3742180 - 3742133 - GR 77 -14.6 -2.93073 | overlap 3742130 GGCCCCGAACAACCA GGCGTTGCCGCCGGCACCACCG TTAG CGCCGGTCCCGCCGGCCCCGCC GGCCCCGCCGTTGCC TERM 1958 3742258 - 3742205 - GR 81 -16.5 -2.70932 | GTTGCCGTTCAACCA CCCGCCGGATCCGCCGACACCGCCG GCAG CGCCGGCCCCGCCGGACCCGCCGGA CCCGCCGTTGCCGAA TERM 1959 3742294 - 3742277 - GR 70 -9.8 -3.61398 | GCCGTTGCCGAACAA CCCGGC CGCGCC GCCGGG CCCACCGACTTGACC Rv3346c 3743455 - 3743198 - | hypothetical protein PPE55 3753184 - 3743711 - | PPE family protein TERM 1960 3747536 - 3747525 - G 72 -7.2 -4.1822 | overlap 3747526 CCGGAGTTGAAGAAA CCCG ACGA CGGG GTGGCGGTCGCGTTC TERM 1961 3750964 - 3750946 - G 80 -17.4 -2.62616 | opp_overlap 3750956 3750958, overlap 3750905 CGATGCCCGAGACCA CCGCCGGG GTC CCCGGCGG CAACCCGCCGGTGTT TERM 1962 3750956 - 3750977 + g 73 -12.9 -3.28712 | opp_overlap 3750946, overlap 3750958 GACCACCGCCGGGGT CCCCGGCGG CAAC CCGCCGGTG TTGTACAGCCCCGAC TERM 1963 3750958 - 3750975 + g 73 -14.1 -3.21276 | opp_overlap 3750946, overlap 3750956 CCACCGCCGGGGTCC CCGGCGG CAAC CCGCCGG TGTTGTACAGCCCCG TERM 1964 3751124 - 3751176 + g 70 -13.5 -3.01712 | opp_overlap 3751155 GAAATTCCCGAAGCC CGA-CACCCCACCGTCGCCGGAGTT GAAGA AAC-CCGACGACGGAGCGGTGGTCG TGTTGCCAAAGCCCG Rv3348 3753765 - 3754256 + | transposase Rv3349c 3755033 - 3754293 - | transposase PPE56 3767102 - 3755952 - | PPE family protein TERM 1965 3759742 - 3759720 - G 73 -11.2 -3.65046 | opp_overlap 3759720 GCCGGAGTTGAAGAA CCCCGACGAC GGG GTCGCCGTGG TGTTGCCGAACCCTG TERM 1966 3763807 - 3763775 - G 77 -4 -4.83169 | overlap 3763804 ACGGCTCGAGAAAAA GCCCTATCGAACCG GCGAG CGGGTCAAGAGCGC GAATCGGCGAGATGG Rv3351c 3768140 - 3767346 - | hypothetical protein Rv3352c 3768593 - 3768222 - | oxidoreductase Rv3353c 3768996 - 3768736 - | hypothetical protein Rv3354 3769111 - 3769500 + | hypothetical protein Rv3355c 3769807 - 3769514 - | hypothetical protein folD 3770649 - 3769804 - | bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase TERM 1967 3770711 - 3770753 + H 71 -11.4 -3.51934 | opp_overlap 3770722 3770723, overlap 3770709 3770712 CGCTCACGCGCCCAC CGTACGGACAACTTGTACCA TTG TGGTACAGATTATCCGTACA TCTTTCTAAGAGAGG TERM 1968 3770712 - 3770752 + H 75 -14.9 -2.70946 | opp_overlap 3770722 3770723, overlap 3770711 3770709 GCTCACGCGCCCACC GTACGGACAACTTGTACCA TTG TGGTACAGATTATCCGTAC ATCTTTCTAAGAGAG Rv3357 3770773 - 3771048 + | hypothetical protein Rv3358 3771045 - 3771302 + | hypothetical protein Rv3359 3771344 - 3772534 + | oxidoreductase Rv3360 3772651 - 3773019 + | hypothetical protein Rv3361c 3773567 - 3773016 - | hypothetical protein Rv3362c 3774155 - 3773574 - | ATP/GTP-binding protein Rv3363c 3774504 - 3774136 - | hypothetical protein Rv3364c 3774874 - 3774482 - | hypothetical protein Rv3365c 3777501 - 3774871 - | hypothetical protein spoU 3777737 - 3778201 + | tRNA/rRNA methylase SpoU TERM 1969 3779084 - 3779119 + G 71 -13.8 -2.82623 | overlap 3779103 GGCGGGTCGGGCGGT GCCGGCGCGGCCGGTG GCGC CGGCGGCAGCGGCGGC TGGTTGTACGGCAAC PE_PGRS51 3778568 - 3780334 + | PE-PGRS family protein Rv3368c 3780979 - 3780335 - | oxidoreductase Rv3369 3780978 - 3781412 + | hypothetical protein dnaE2 3784776 - 3781501 - | error-prone DNA polymerase TERM 1970 3781575 - 3781585 + g 72 -8.2 -4.11216 | overlap 3781561 CGACGACGGTGATTG CGCC GCT GGCG TTTTGGACCTGGCCG TERM 1971 3782629 - 3782599 - G 72 -8.2 -4.07568 | CTCGGCGGCGGAAAA GCCGGCGCAGTCGA CCG CCAACTGCATCAGC TGCTCCTGAAACAGC Rv3371 3784932 - 3786272 + | hypothetical protein otsB2 3786314 - 3787489 + | trehalose 6-phosphate phosphatase echA18 3787726 - 3788367 + | enoyl-CoA hydratase echA18.1 3788368 - 3788616 + | enoyl-CoA hydratase TERM 1972 3789612 - 3789585 - g 70 -4 -4.57073 | gap 1, overlap 3789586 3789587 3789600 CAGCGTTCGGAAAAA TGCGCG-CGGTCG AAA CGGCGATCGCGCA TGCCGACACCTACCC amiD 3788621 - 3790048 + | amidase AmiD Rv3376 3790156 - 3790809 + | hypothetical protein Rv3377c 3792353 - 3790848 - | cyclase TERM 1973 3792003 - 3792014 + g 74 -5.8 -4.55118 | GATTAACTCAAACCC GACG GTTG CGTC TTTTATATCAAGTTG TERM 1974 3792066 - 3792077 + g 77 -5.8 -4.66833 | GGTAAGGTTCTTCAG GGCT AGCA AGCC TTTTTCAACTTGCGC Rv3378c 3793248 - 3792358 - | hypothetical protein TERM 1975 3792746 - 3792736 - G 71 -3.2 -4.62984 | CCACGAGATAGAAAA CTGC GCA ACAG ACTCAGCCGCATCGT TERM 1976 3792907 - 3792897 - G 74 -2.4 -4.74611 | opp_overlap 3792894 CACCATAAAAAAGAA CGTG GAC CTCG TGTTCTTTATAGAAC dxs2 3794867 - 3793257 - | 1-deoxy-D-xylulose-5-phosphate synthase TERM 1977 3794661 - 3794684 + g 70 -11 -3.57462 | GATGACACGTCGGTC GCATTGCCCC TGCA GGGCCAATGC TTTGGCGATGCCGTC TERM 1978 3794993 - 3795011 + r 70 -10.3 -3.54543 | CGACGCATCTGCACG GCCAGCT CTGGC AGCTGGC TTTCGGGCAATGCCT Rv3380c 3795984 - 3795100 - | transposase Rv3381c 3796361 - 3796035 - | transposase lytB1 3797437 - 3796448 - | LYTB-like protein LYTB1 idsB 3798489 - 3797437 - | polyprenyl synthetase IdsB Rv3384c 3799635 - 3799243 - | hypothetical protein Rv3385c 3799943 - 3799635 - | hypothetical protein TERM 1979 3800047 - 3800094 + H 76 -10.8 -3.81951 | gap 1, overlap 3800049 3800050 3800052 TTGGCGCTGAGCTGG GAGGATGGCCTCAATGCCCTT GTTGCGG AAGGG-ATTGAGGCCATCGTG TTTCGTACTGTAGGC TERM 1980 3800049 - 3800092 + H 79 -13.4 -3.49482 | gap 1, overlap 3800047 3800050 3800052 GGCGCTGAGCTGGGA GGATGGCCTCAATGCCCTT GTTGCGG AAGGG-ATTGAGGCCATCG TGTTTCGTACTGTAG TERM 1981 3800050 - 3800091 + H 84 -16.9 -2.69207 | gap 1, overlap 3800049 3800047 3800052 GCGCTGAGCTGGGAG GATGGCCTCAATGCCCTT GTTGCGG AAGGG-ATTGAGGCCATC GTGTTTCGTACTGTA TERM 1982 3800052 - 3800089 + H 74 -13.7 -2.88215 | gap 1, overlap 3800050 3800049 3800047 GCTGAGCTGGGAGGA TGGCCTCAATGCCCTT GTTGCGG AAGGG-ATTGAGGCCA TCGTGTTTCGTACTG Rv3386 3800092 - 3800796 + | transposase TERM 1983 3800853 - 3800837 - g 78 -13.7 -3.53091 | AGTGGGCGGCGCAAA GCCTGGC TAC GCCAGGC CATCAACCATCTCGA Rv3387 3800786 - 3801463 + | transposase TERM 1984 3802553 - 3802504 - g 100 -18.6 -4.07885 | CATCGGCGGGCAAAA CACCGAGACCGGCCCG-GCCGCCA GCAA CGGCGGCGCGGG-CGGCGCCGGTG GCGGCGGCGGGTACC TERM 1985 3802769 - 3802741 - g 83 -15.9 -3.61398 | CGGCGGGCTCAACAA CGCCGGTGGTGCC ACC GGCGGCACCGGCG GTACCGGCGGAGCCG TERM 1986 3802884 - 3802854 - g 75 -13.2 -3.38991 | overlap 3802852 ACGGCGGCAACAATA CCAGCGCCGGCACC GGT GGTGTCGGGGCTAG CGGCGGGACCGGCGG TERM 1987 3802952 - 3802903 - g 77 -13.4 -3.54424 | CGGGACCGGCGGAAA CGCCGG-GCTGATCGGCGCCGGCG GCCA CGGCGGGGCCGG-CGGCGCCGGCG GAAACCAAACCGGTG TERM 1988 3803435 - 3803464 + G 100 -22.9 -3.41878 | GGCAACGGCGGGGCC GGCGGCACCGGCG GTAA CGCCGGTGTCGCC TTGTCGGTTGGCAGC PE_PGRS52 3801653 - 3803848 + | PE-PGRS family protein TERM 1989 3803904 - 3803863 - T 100 -24.1 -2.78463 | gap 1, opp_overlap 3803863 3803870, overlap 3803870 AGGCCCGCGAGCAGA CGCAAAATCGCCCAATTTCG TGC CGAA-TTGGGCGATTTTGCG TCTGCTCGGCGCAGC TERM 1990 3803863 - 3803904 + T 100 -24.1 -2.78384 | gap 1, opp_overlap 3803863 3803870, overlap 3803870 AGGCCCGCGAGCAGA CGCAAAATCGCCCAATTTCG TGC CGAA-TTGGGCGATTTTGCG TCTGCTCGGCGCAGC TERM 1991 3803897 - 3803870 - T 100 -13.6 -4.24948 | gap 1, opp_overlap 3803863 3803870, overlap 3803863 CGAGCAGACGCAAAA TCGCCCAATTTCG TGC CGAA-TTGGGCGA TTTTGCGTCTGCTCG TERM 1992 3803870 - 3803897 + T 100 -13.6 -4.24948 | gap 1, opp_overlap 3803870 3803863, overlap 3803863 CGAGCAGACGCAAAA TCGCCCAATTTCG TGC CGAA-TTGGGCGA TTTTGCGTCTGCTCG Rv3389c 3804791 - 3803919 - | dehydrogenase lpqD 3804865 - 3805575 + | lipoprotein LpqD acrA1 3805621 - 3807573 + | short chain dehydrogenase cmaA1 3808437 - 3807574 - | cyclopropane-fatty-acyl-phospholipid synthase 1 CMAA1 (cyclopropane fatty acid synthase) (CFA synthase) (cyclopropane mycolic acid synthase 1) TERM 1993 3808165 - 3808182 + g 74 -5.5 -4.56597 | overlap 3808167 GCTCAGGGTCAGACC GACGACG TTGA CGTCGTA TTTTTCCACCGCGCG TERM 1994 3809300 - 3809336 + G 73 -10.9 -3.62522 | gap 1, opp_overlap 3809298, overlap 3809303 3809328 CGGGAAGCGAAATCC CAACGCGCGGATCGGC ATGAGC GTCGATCCG-GCGGTG TTCTTCGACCGGTTC iunH 3808461 - 3809387 + | nucleoside hydrolase IunH Rv3394c 3811025 - 3809442 - | hypothetical protein TERM 1995 3809675 - 3809685 + g 70 -8.2 -3.91084 | TCCCCCGGCTGGTCA CCCG TAT CGGG TTTCCTTGGGCGTCA TERM 1996 3810699 - 3810688 - G 87 -7.2 -5.0538 | overlap 3810689 3810690 TCGGACCCGAAAAAA CGGG CCGG CCCG CGCACCGGCAACACC Rv3395c 3811636 - 3811022 - | hypothetical protein Rv3395A 3811719 - 3812345 + | hypothetical protein guaA 3814078 - 3812501 - | bifunctional GMP synthase/glutamine amidotransferase protein phyA 3814998 - 3814090 - | phytoene synthase TERM 1997 3814500 - 3814489 - G 70 -2.2 -4.65895 | CCGTCCATTCAAAAA GTCC TCTC GAAC GTCGCGCAGAATATT idsA1 3816106 - 3815027 - | multifunctional dimethylallyltransferase/farnesyl diphosphate synthetase/ farnesyltranstransferase Rv3399 3816129 - 3817175 + | hypothetical protein Rv3400 3817239 - 3818027 + | hydrolase Rv3401 3818042 - 3820402 + | hypothetical protein TERM 1998 3820426 - 3820408 - T 84 -17.4 -2.78463 | AGCCCGGTGACGATA CGGGCCGC GTA GCGGCCCG AGGAGGAGCCGGGCA Rv3402c 3821891 - 3820653 - | hypothetical protein Rv3403c 3823863 - 3822262 - | hypothetical protein Rv3404c 3824584 - 3823880 - | hypothetical protein Rv3405c 3825268 - 3824702 - | transcriptional regulatory protein TERM 1999 3825185 - 3825215 + g 77 -15.5 -3.01924 | gap 1, opp_overlap 3825181 CTCGGCGAACAGGTC GGTGGCGGCCTGCA GGAT TGC-GGCCGCTACC TCTTCCCGCCCAGTG Rv3406 3825330 - 3826217 + | dioxygenase Rv3407 3826252 - 3826551 + | hypothetical protein Rv3408 3826548 - 3826958 + | hypothetical protein choD 3828727 - 3826991 - | cholesterol oxidase precursor guaB3 3829910 - 3828783 - | inositol-5-monophosphate dehydrogenase guaB2 3831519 - 3829930 - | inositol-5-monophosphate dehydrogenase Rv3412 3831726 - 3832136 + | hypothetical protein Rv3413c 3833045 - 3832146 - | hypothetical protein TERM 2000 3832237 - 3832247 + g 76 -8.2 -4.25283 | opp_overlap 3832224 3832236, overlap 3832232 GAGGGGTCAATTGAG CCCG GCT CGGG TTTTGATGACGGCGT TERM 2001 3832794 - 3832758 - G 73 -14.3 -3.21099 | overlap 3832760 CCCGCTCAGCACCAA CAGCGCCGCGGCCACCG ACC CGACGGCCGCCAGGCTG CGACGAGCCCGTCGC TERM 2002 3832798 - 3832848 + g 80 -16.9 -2.62184 | gap 2, opp_overlap 3832760 GCCGCCAGGCTGCGA CGAGCCCGTCG-C-CGTTGCGCTAC CCC GGCGCGCAACGCGGCGACGGCCTCG TCCTGTGAAACCAGG sigD 3833676 - 3833038 - | RNA polymerase sigma factor SigD Rv3415c 3834521 - 3833694 - | hypothetical protein TERM 2003 3833736 - 3833752 + g 75 -7.3 -4.30978 | overlap 3833738 GCGCCGCACCTGGCC TGCGCAA ATA TTGCGTA TTTTGGTGAGTTCGC whiB3 3834892 - 3835200 + | transcriptional regulatory protein WHIB-like WHIB3 TERM 2004 3835256 - 3835215 - T 100 -25.3 -2.78463 | gap 1, opp_overlap 3835215 3835222, overlap 3835222 AGCCGCGCGAGCAGA CGCTAAAGCCCCCG-CACGC TCG GCGTGTCGGGGGCTTTTGCG TCTGCTGACCGGAGT TERM 2005 3835215 - 3835256 + T 100 -25.3 -2.78463 | gap 1, opp_overlap 3835215 3835222, overlap 3835222 AGCCGCGCGAGCAGA CGCTAAAGCCCCCG-CACGC TCG GCGTGTCGGGGGCTTTTGCG TCTGCTGACCGGAGT TERM 2006 3835222 - 3835249 + T 100 -19.2 -4.24948 | gap 1, opp_overlap 3835215 3835222, overlap 3835215 CGAGCAGACGCTAAA GCCCCCG-CACGC TCG GCGTGTCGGGGGC TTTTGCGTCTGCTGA TERM 2007 3835249 - 3835222 - T 100 -19.2 -3.64599 | gap 1, opp_overlap 3835222 3835215, overlap 3835215 CGAGCAGACGCTAAA GCCCCCG-CACGC TCG GCGTGTCGGGGGC TTTTGCGTCTGCTGA groEL 3836891 - 3835272 - | chaperonin GroEL TERM 2008 3835784 - 3835806 + g 72 -8.4 -4.11216 | opp_overlap 3835773 3835772 3835768 CAACCCCGCCGGCCA GTTTGGCCAG CCG CTCGCCAAGC TTTTCCCGATCCCAA TERM 2009 3836924 - 3836981 + r 74 -13.5 -2.86164 | gap 3, opp_overlap 3836927 3836941 3836944 GGCTAGTCCGCTAAC GCATG--CCGCCCCGGAAATCACCCGTG GTGAG CACGGG-GATCGCCGGGGCGGAACACGC TCTACTACTTGGAAA TERM 2010 3836976 - 3836927 - R 91 -20.8 -2.52676 | gap 1, opp_overlap 3836924, overlap 3836941 3836944 TAGTCCGCTAACGCA TGCCGCCCCGGAAATCACCCGTG GTGAG CACGGG-GATCGCCGGGGCGGAA CACGCTCTACTACTT groES 3837288 - 3836986 - | co-chaperonin GroES gcp 3838589 - 3837555 - | O-sialoglycoprotein endopeptidase rimI 3839062 - 3838586 - | ribosomal-protein-alanine acetyltransferase Rv3421c 3839694 - 3839059 - | hypothetical protein Rv3422c 3840197 - 3839691 - | hypothetical protein TERM 2011 3839927 - 3839943 + g 71 -15.1 -2.52464 | overlap 3839915 CCATCGCCGGCGTGC CCGGCCG CCG CGGCCGG TGCATTCGCGCCAGC alr 3841420 - 3840194 - | alanine racemase Rv3424c 3842076 - 3841714 - | hypothetical protein TERM 2012 3841791 - 3841814 + g 70 -2.4 -4.62069 | CGCAAACCGACGGCA CACCCC TTGCACGGATGT GGGGTG TTTTTGAGATGGAGC PPE57 3842239 - 3842769 + | PPE family protein PPE58 3843036 - 3843734 + | PPE family protein Rv3427c 3844640 - 3843885 - | transposase Rv3428c 3845970 - 3844738 - | transposase Rv3430c 3848805 - 3847642 - | transposase PPE59 3847165 - 3847701 + | PPE family protein Rv3431c 3850139 - 3849294 - | hypothetical protein gadB 3851754 - 3850372 - | glutamate decarboxylase GadB Rv3433c 3853213 - 3851792 - | hypothetical protein Rv3434c 3853928 - 3853215 - | transmembrane protein Rv3435c 3854793 - 3853939 - | transmembrane protein glmS 3856889 - 3855015 - | D-fructose-6-phosphate amidotransferase Rv3437 3856911 - 3857387 + | transmembrane protein TERM 2013 3857785 - 3857832 + G 90 -18.4 -3.02144 | GCTCGGCCGCCGTGT TCGCCGCCGCCGGCTTGACCGG CACG CACGTCAAGTCCGTGGCGGCGA TATTCCCGACGGTGA Rv3438 3857397 - 3858239 + | hypothetical protein Rv3439c 3859662 - 3858259 - | hypothetical protein Rv3440c 3859976 - 3859665 - | hypothetical protein mrsA 3861370 - 3860024 - | phospho-sugar mutase / MRSA protein TERM 2014 3860954 - 3861010 + g 71 -9.3 -3.85698 | overlap 3860959 3860962 3860967 CGGCCGCAACCCGGG TCCGCGGGAGACGCCGAGGACCAGATC CTC GATCTGATCCTCGGTGTCGTCATCTAA TTTGTGGCCGCCGGG TERM 2015 3860959 - 3861005 + g 79 -16.6 -3.05997 | overlap 3860954 3860962 3860967 GCAACCCGGGTCCGC GGGAGACGCCGAGGACCAGATC CTC GATCTGATCCTCGGTGTCGTCA TCTAATTTGTGGCCG TERM 2016 3860962 - 3861002 + g 87 -19.1 -2.74598 | overlap 3860959 3860954 3860967 ACCCGGGTCCGCGGG AGACGCCGAGGACCAGATC CTC GATCTGATCCTCGGTGTCG TCATCTAATTTGTGG TERM 2017 3860967 - 3860997 + g 89 -18.4 -2.85378 | overlap 3860962 3860959 3860954 GGTCCGCGGGAGACG CCGAGGACCAGATC CTC GATCTGATCCTCGG TGTCGTCATCTAATT rpsI 3861950 - 3861495 - | 30S ribosomal protein S9 rplM 3862390 - 3861947 - | 50S ribosomal protein L13 TERM 2018 3862597 - 3862551 - R 100 -16.6 -4.14739 | opp_overlap 3862544 3862551, overlap 3862554 CCACGCAGGTCAAAA TGACTGTGTGGTCCCGACGG CTCTCCC CCGTCGGGACCACACAGGGG TCTGTTGCGCGCTCC TERM 2019 3862551 - 3862597 + r 91 -18.8 -3.07344 | opp_overlap 3862551 3862554, overlap 3862544 CCACGCAGGTCAAAA TGACTGTGTGGTCCCGACGG CTCTCCC CCGTCGGGACCACACAGGGG TCTGTTGCGCGCTCC TERM 2020 3862594 - 3862554 - R 100 -27.1 -3.09831 | opp_overlap 3862551, overlap 3862551 CGCAGGTCAAAATGA CTGTGTGGTCCCGACGG CTCTCCC CCGTCGGGACCACACAG GGGTCTGTTGCGCGC esxT 3862926 - 3862624 - | putative ESAT-6 like protein ESXT esxU 3863324 - 3862947 - | ESAT-6 like protein ESXU Rv3446c 3864531 - 3863317 - | hypothetical protein TERM 2021 3863585 - 3863601 + g 74 -12.3 -3.50393 | GTGCCAGGCAGCGTC TCACCGG GAA CCGGTGA TTGTGTGACGTGCAA Rv3447c 3868238 - 3864528 - | hypothetical protein TERM 2022 3867733 - 3867691 - G 70 -8.3 -3.90112 | gap 2, overlap 3867694 TGTGCGGCAAGGAAA CAGCGCAGC--GCGGCGCGGG TGA CCGGATCCGCACGCTGCGCCG GCGGAAGCTGCCCGA TERM 2023 3869557 - 3869596 + G 77 -5.6 -4.67904 | gap 1, overlap 3869559 GGAACACGGGCCGTG GATTGCCGCGCTGACC-GC CAT GCTGGCCGCCGTGGCAATG TTTTTGGGCTTCGTC TERM 2024 3869559 - 3869594 + G 70 -8.2 -3.94933 | gap 1, overlap 3869557 AACACGGGCCGTGGA TTGCCGCGCTGACC-GC CAT GCTGGCCGCCGTGGCAA TGTTTTTGGGCTTCG Rv3448 3868352 - 3869755 + | integral membrane protein mycP4 3869752 - 3871119 + | membrane-anchored mycosin Rv3450c 3872496 - 3871084 - | hypothetical protein cut3 3872617 - 3873405 + | cutinase precursor CUT3 TERM 2025 3873518 - 3873550 + G 86 -17 -3.33696 | gap 1, overlap 3873520 3873520 3873520 CGCCGCCTCACCAGC CTG-GTGGCCGCCGC CTTT GCGGCGGCCACACTG TTGCTTACCCCCGCG TERM 2026 3873520 - 3873548 + G 89 -18.2 -3.23853 | gap 1, overlap 3873518 3873520 3873520 CCGCCTCACCAGCCT G-GTGGCCGCCGC CTTT GCGGCGGCCACAC TGTTGCTTACCCCCG TERM 2027 3873520 - 3873547 + G 87 -18.4 -2.54098 | overlap 3873520 3873518 3873520 CCGCCTCACCAGCCT GGTGGCCGCCGC CTTT GCGGCGGCCACA CTGTTGCTTACCCCC cut4 3873452 - 3874132 + | cutinase precursor CUT4 Rv3453 3874404 - 3874736 + | transmembrane protein Rv3454 3874822 - 3876090 + | integral membrane protein truA 3876945 - 3876052 - | tRNA pseudouridine synthase A rplQ 3877432 - 3876890 - | 50S ribosomal protein L17 rpoA 3878507 - 3877464 - | DNA-directed RNA polymerase subunit alpha TERM 2028 3878555 - 3878612 + r 91 -18.5 -3.17392 | gap 2 TGACGTCTGTGGGGG CACTCG-GGGGCGGCGC-CCCCGAG GGTGGGGGTA CTCGGGGGGCGGCGCCCCCCGAGGG TTGGGTTGGGGGGTA TERM 2029 3878626 - 3878652 + r 84 -15.8 -3.35586 | overlap 3878645 GGTTGGGTTGGGGGG TACTCGGGGGGC GGC GCCCCCCGAGGG TTGGGTTTACTTTGA rpsD 3879264 - 3878659 - | 30S ribosomal protein S4 rpsK 3879692 - 3879273 - | 30S ribosomal protein S11 rpsM 3880070 - 3879696 - | 30S ribosomal protein S13 rpmJ 3880399 - 3880286 - | 50S ribosomal protein L36 infA 3880653 - 3880432 - | translation initiation factor IF-1 TERM 2030 3881174 - 3881191 + G 77 -10.5 -3.98661 | TTCCACCGCATCGAG GCGGCCT ACCC GGGCCGC TTTCTGCTGGGTATC Rv3463 3880907 - 3881764 + | hypothetical protein rmlB 3881837 - 3882832 + | dTDP-glucose 4,6-dehydratase RMLB rmlC 3882834 - 3883442 + | dTDP-4-dehydrorhamnose 3,5-epimerase RmlC Rv3466 3883525 - 3884193 + | hypothetical protein TERM 2031 3884460 - 3884430 - gT 77 -12.5 -3.57792 | TGACCGACCTGCAAA CCGGCGCCGGCAA GGGCT TCACCGGCGGCGG CACCCTGCTACCCAT TERM 2032 3884786 - 3884774 - gT 71 -3.3 -4.57569 | CGACTCGCCGAAAAA GGCTG GAC CACCC ACAACAACACCCACG Rv3467 3883964 - 3884917 + | hypothetical protein Rv3468c 3886069 - 3884975 - | dTDP-glucose 4,6-dehydratase TERM 2033 3885247 - 3885204 - G 71 -13.8 -2.87132 | gap 1, overlap 3885189 3885235 CGCTGGGTCCACACA GCCGCGGCCAGCGGTACCCGC CGG GCGAACACCGAT-GCCGCGTC GGTGCGCAGCTGCGT mhpE 3887083 - 3886073 - | 4-hydroxy-2-ketovalerate aldolase TERM 2034 3886106 - 3886137 + g 81 -10.9 -4.13014 | gap 1 GACCACTCGATCGAT GTCTTGCGGGGACA ACCAC TG-CCCCGCATGAC TTTTCGCGGTCTGCC ilvB2 3888802 - 3887144 - | acetolactate synthase large subunit TERM 2035 3887790 - 3887774 - G 72 -5.8 -4.3739 | gap 1 CACCCTCCGACAAAA GCGTGGC GGCC GCC-CGC AGTTCAGGGCATTGA Rv3471c 3889341 - 3888808 - | hypothetical protein Rv3472 3889362 - 3889868 + | hypothetical protein bpoA 3890733 - 3889948 - | peroxidase BpoA Rv3474 3890830 - 3891156 + | transposase IS6110 Rv3475 3891051 - 3892091 + | transposase IS6110 kgtP 3893720 - 3892371 - | dicarboxylic acid transport integral membrane protein KgtP TERM 2036 3892699 - 3892689 - G 72 -6.8 -4.23674 | GGCCACCAATAGAAA CGAC ATT GTCG GCGAACGTGTTTCGG TERM 2037 3893276 - 3893247 - G 74 -12.7 -3.49924 | overlap 3893238 3893250 CTGAAACGACGAGAA GTAGCCGCGCCGC TCCC GCGTCGCGGCCTC AGACATGTACGTCGC TERM 2038 3893273 - 3893250 - G 73 -15.2 -2.88358 | overlap 3893238 3893247 AAACGACGAGAAGTA GCCGCGCCGC TCCC GCGTCGCGGC CTCAGACATGTACGT PE31 3894093 - 3894389 + | PE family protein TERM 2039 3895280 - 3895324 + G 70 -10 -3.66844 | gap 1, overlap 3895284 GGCGGAAAACGGGGT CTGGGCGATGAGCTC-GCTGG GCAG CCAGCTGGGTTCGTCGCTGGG TTCTTCGGGTCTGGG PPE60 3894426 - 3895607 + | PE family protein TERM 2040 3895758 - 3895741 - f 72 -7.7 -4.13767 | GCTGGCATTCGAAAA GCCGTCA CCGG TAACGGC ATTGACGCAGGAACT TERM 2041 3896153 - 3896133 - g 79 -4.6 -4.77165 | CGCGGGACAAGAAAA CACCGTCC CTCTT GTACGGCG ACGAACGCATATTCG TERM 2042 3896732 - 3896704 - g 86 -16.8 -3.34043 | GCCACCACCGGACAA CGTCGACGAGCC ACTCG GGCTCATCGACG GGCTGCTGAAGGGCC TERM 2043 3898352 - 3898318 - g 75 -7 -4.4078 | overlap 3898323 TCTGCTGAACGAAAA TCCAATCGCAGGCGAA ACA TTCGCCAGCGACAAGG GCTCACCACTGATGG TERM 2044 3898347 - 3898323 - g 77 -14.3 -3.41708 | overlap 3898318 TGAACGAAAATCCAA TCGCAGGCGAA ACA TTCGCCAGCGA CAAGGGCTCACCACT TERM 2045 3898623 - 3898670 + G 71 -3.3 -4.63928 | gap 2 TCGCGGCCGGGACTG GGGGCTTGCTGGTCGTCCTAGGC ACTT GGC-AGGTCT-CCGGCAGGCTCC TTTTTGCACTGCTGT Rv3479 3895820 - 3898885 + | hypothetical protein Rv3480c 3900402 - 3898909 - | hypothetical protein Rv3481c 3901182 - 3900493 - | integral membrane protein Rv3482c 3902106 - 3901324 - | hypothetical protein Rv3483c 3902812 - 3902150 - | hypothetical protein cpsA 3903078 - 3904616 + | hypothetical protein Rv3485c 3905566 - 3904622 - | short chain dehydrogenase TERM 2046 3906215 - 3906195 - g 72 -11.8 -3.55563 | AGGCGACTGTCCAAA CGCGCCAC GGCTT GCGGCGCG AGGTGAACCCGCGAC Rv3486 3905772 - 3906221 + | hypothetical protein lipF 3907007 - 3906174 - | esterase/lipase LipF Rv3488 3907667 - 3907990 + | hypothetical protein Rv3489 3908072 - 3908236 + | hypothetical protein TERM 2047 3908765 - 3908780 + G 82 -4.7 -4.86385 | TGCGCATGCTGCGGC CCGAT CTGACC ATCGG TTTCTTTTTGCACAT TERM 2048 3908858 - 3908906 + G 71 -9.5 -3.81287 | gap 1, overlap 3908855 AGATCATCCAGGGCC TACTGGGCGCCGACCTGGTGGG CTTCCA TCTTCCGGG-CGGTGCCCAGAA TTTCCTGATCCTGTC otsA 3908236 - 3909738 + | alpha,alpha-trehalose-phosphate synthase TERM 2049 3909768 - 3909809 + F 100 -25.5 -2.78596 | gap 1, opp_overlap 3909768 3909775, overlap 3909775 CCGCTCGCGAGCAGA CGCAGAATCGCCC-ATTTCG GCA CGAAATTGGGCGATTCTGCG TCTGCTCGCGCCCTG TERM 2050 3909809 - 3909768 - f 100 -25.5 -2.78384 | gap 1, opp_overlap 3909768 3909775, overlap 3909775 CCGCTCGCGAGCAGA CGCAGAATCGCCC-ATTTCG GCA CGAAATTGGGCGATTCTGCG TCTGCTCGCGCCCTG TERM 2051 3909775 - 3909802 + F 79 -13.6 -3.40299 | gap 1, opp_overlap 3909768 3909775, overlap 3909768 CGAGCAGACGCAGAA TCGCCC-ATTTCG GCA CGAAATTGGGCGA TTCTGCGTCTGCTCG TERM 2052 3909802 - 3909775 - f 79 -13.6 -3.40299 | gap 1, opp_overlap 3909775 3909768, overlap 3909768 CGAGCAGACGCAGAA TCGCCC-ATTTCG GCA CGAAATTGGGCGA TTCTGCGTCTGCTCG Rv3491 3909890 - 3910468 + | hypothetical protein Rv3492c 3910947 - 3910465 - | Mce associated protein Rv3493c 3911675 - 3910947 - | Mce associated alanine and valine rich protein TERM 2053 3911475 - 3911438 - G 75 -12 -3.64703 | gap 1, opp_overlap 3911466 CTGCCGCCAGCGAAA GCCA-GCCGACCAGGAC GCGGT GTGCCGGCCGGCGTGGC GGCGGTTTGACCGGC mce4F 3913369 - 3911675 - | MCE-family protein MCE4F TERM 2054 3913322 - 3913292 - G 72 -4.6 -4.56358 | overlap 3913294 3913295 CAGACGCAGATAAAA GATCGCCATCACGC TCA GGGTGATGACGGTG ATCACCGCAAAAATG lprN 3914534 - 3913380 - | MCE-family lipoprotein LprN mce4D 3915886 - 3914531 - | MCE-family protein MCE4D mce4C 3916956 - 3915883 - | MCE-family protein MCE4C mce4B 3917998 - 3916946 - | MCE-family protein MCE4B mce4A 3919200 - 3917998 - | MCE-family protein MCE4A TERM 2055 3919205 - 3919216 + r 72 -4.4 -4.56597 | CCGCCGGACATGTTT CCTT TCTG AAGG TTTTTACCCCGAGAG yrbE4B 3920062 - 3919220 - | integral membrane protein YrbE4b TERM 2056 3919770 - 3919748 - G 81 -7.6 -4.59773 | overlap 3919733 GCGGACGTTCAAAAA CGCCGACAGG AAC CCGGTCAACG CCTCGATACCGATGT TERM 2057 3919859 - 3919844 - G 73 -3.9 -4.59773 | CGCCAGGGTCAAAAA GGCCG CCACCC CGACC GTGCCGCCGATCATG TERM 2058 3920041 - 3920031 - G 75 -4.6 -4.65263 | AGCCGCGAAAAGAAA CGGC GAA ACCG GATAGTGACGTCGTA yrbE4A 3920861 - 3920097 - | integral membrane protein YrbE4a fabG 3922040 - 3921087 - | 3-ketoacyl-(acyl-carrier-protein) reductase TERM 2059 3921453 - 3921498 + g 80 -16.8 -2.73364 | opp_overlap 3921431 3921432 GCGCCCGAGCGCCCG CGCCGCCGACAGGGTTAGCG CGGTGA TGCCAGCCTTGGCGGCGGCG TAATTCGCCTGCCCC fdxD 3922256 - 3922065 - | ferredoxin FdxD TERM 2060 3923043 - 3923026 - g 81 -4.1 -5.00616 | opp_overlap 3923026, overlap 3923001 TCTGGGGCCAAAAAA CACCG TGGCATAT CGGTG TTAATCGTGCCGACG fadE26 3922471 - 3923673 + | acyl-CoA dehydrogenase FADE26 fadE27 3923698 - 3924819 + | acyl-CoA dehydrogenase FADE27 TERM 2061 3925291 - 3925314 + G 74 -8 -4.18018 | GACCGACGAGGTGGC CGCACACCGG GATA CCGAGGTGCG TTTTCGATCCGCGGA fadD17 3924890 - 3926398 + | acyl-CoA synthetase TERM 2062 3926706 - 3926655 - g 100 -20 -4.25104 | opp_overlap 3926666 3926684 3926687 3926689 3926690 GCTGGCCCACGAAAA CGCGTCGGCGGCCGCTTCGACGAC GGCG GTGGTCTCCGCGGCCGCCGACGAG GTATCGACGGCGGTC TERM 2063 3926689 - 3926726 + G 76 -14.7 -3.17146 | opp_overlap 3926655, overlap 3926687 3926684 3926690 ACGACGGCGGTGGTC TCCGCGGCCGCCGACGA GGTA TCGACGGCGGTCGCCGC TCTGTTCTCCCAACA TERM 2064 3926690 - 3926725 + G 85 -18.2 -2.50074 | opp_overlap 3926655, overlap 3926689 3926687 3926684 CGACGGCGGTGGTCT CCGCGGCCGCCGACGA GGTA TCGACGGCGGTCGCCG CTCTGTTCTCCCAAC TERM 2065 3927367 - 3927425 + G 89 -18.7 -2.82895 | gap 2, overlap 3927382 ATCGGTGGCCAGGGT --ACCGGCGCCGGCGGTGCCGCCGGCGCC GGC GGCACCGGGGGCAACGGCGGCGCCGGGGG GTTGTTCATGAACGG TERM 2066 3927382 - 3927426 + G 77 -12.5 -3.71848 | overlap 3927367 ACCGGCGCCGGCGGT GCCGCCGGCGCCGGCGGCACC GGG GGCAACGGCGGCGCCGGGGGG TTGTTCATGAACGGC TERM 2067 3927999 - 3927952 - g 77 -13.5 -3.53811 | gap 3, overlap 3927953 GGCACCGGCGGCAAA GGTGGCACCGGCG--GT-GCCGGC GGC GCCGGCAACGACGCCGGCAGCACC GGCAATCCCGGCGGT TERM 2068 3928008 - 3927953 - g 72 -14.7 -2.72144 | gap 2, overlap 3927952 GCACCGGCGGCAAAG GTGGCACCGGCGGTGCCGGCGGCGCCG GCAA CGACGCCGGCAGCACCGGCAAT-CC-C GGCGGTAAGGGCGGC TERM 2069 3929422 - 3929364 - g 73 -14.2 -3.12351 | overlap 3929400 3929401 CTTGCCCACACCCAA CGGCGGGGCCGGTGGCAACGGTGGCACC GGA AGCAACGGCGGCGCGCCCGGCCCCGCCG GGGCGCCCGGCCCCA TERM 2070 3929432 - 3929400 - g 75 -13.4 -3.35813 | gap 2, overlap 3929364 3929401 TGGCACCGGAAGCAA CGGCGGCGCGCCCGGC CCC GCCGGG-GCGCC-CGG CCCCACTACCGGCGG TERM 2071 3929434 - 3929401 - g 74 -15.9 -2.61274 | gap 1, overlap 3929364 3929400 GGCACCGGAAGCAAC GGCGGCGCG-CCCGGC CCC GCCGGGGCGCCCGGCC CCACTACCGGCGGTA TERM 2072 3930078 - 3930034 - g 90 -17.7 -3.53012 | overlap 3929982 3930053 TCGGCCGGCGGGAAA GGCGGCGACGGCGGCAACATC GCC GCCGGTGCCACCGGCACCGCC GGCAACGGCGGGAAC TERM 2073 3930110 - 3930053 - g 100 -25.5 -3.02511 | overlap 3930034 GCGACGGCGGCAACA TCGCCGCCGGTGCCACCGGCACCGCCG GCAA CGGCGGGAACGGCGGCAACGGCAACGA CGGCGCCGTCAACGC TERM 2074 3930377 - 3930392 + G 72 -11.8 -3.53012 | GCGGCAACGGCGGCA CCGGCG GCTT CGCCGG TTTCGGCGGCACCGC PE_PGRS53 3926569 - 3930714 + | PE-PGRS family protein TERM 2075 3931434 - 3931478 + G 100 -19.2 -3.28712 | gap 1, overlap 3931435 GGCGGGGCCGGGGCA GCCGGGGCGCCCGGCCAGGCC GGCG GGCCTGGC-GGGCCCGCCGGA TTGTGGGGCAACGGC TERM 2076 3931435 - 3931477 + G 100 -22.7 -2.57132 | gap 1, overlap 3931434 GCGGGGCCGGGGCAG CCGGGGCGCCCGGCCAGGCC GGCG GGCCTGGC-GGGCCCGCCGG ATTGTGGGGCAACGG TERM 2077 3931678 - 3931713 + G 74 -14.6 -3.01712 | gap 1 TCGGTGGGGCCGGTG GCGGCACCGGCGGGGCC GGC GGCCGCGCCGA-GCTGC TGTTCGGCGCCGGCG TERM 2078 3932082 - 3932118 + G 70 -13 -3.01712 | gap 2 GGTGTCGGCGGCGTG GCTGGCCTCGGCGGGGCC GGT GGTGCCGC-G-GGCCAGC TCTTCAGCGCCGGAG TERM 2079 3932426 - 3932481 + G 73 -13.6 -3.28712 | opp_overlap 3932473, overlap 3932427 GGGTGGGACTGGCGG TAACGCCGGCGCCGGCGGGGCCGGCG GGGC CGCCGGCACCGGAGGAACCGGCGGGG TTGTCGGCGCCGCGG TERM 2080 3932427 - 3932480 + G 71 -14.9 -2.57132 | opp_overlap 3932473, overlap 3932426 GGTGGGACTGGCGGT AACGCCGGCGCCGGCGGGGCCGGCG GGGC CGCCGGCACCGGAGGAACCGGCGGG GTTGTCGGCGCCGCG TERM 2081 3932574 - 3932597 + G 75 -9.5 -4.13767 | overlap 3932575 ACGGATGCGACCGCT ACCGGTGCC ACCGGC GGCACCGGG TTTTCCGGTGGAGCC TERM 2082 3932575 - 3932596 + G 72 -13 -3.08046 | overlap 3932574 CGGATGCGACCGCTA CCGGTGCC ACCGGC GGCACCGG GTTTTCCGGTGGAGC TERM 2083 3932787 - 3932732 - g 71 -12.2 -3.28712 | opp_overlap 3932778, overlap 3932733 3932772 3932773 TGTCGGCGCCGACAA CCCCACCGGCATCGGCGGCACCGGCG GCAC CGGCGGGAAAGGCGGCGCCGGCGGGG CCGGCGGGCAGGGCG TERM 2084 3932946 - 3932900 - g 100 -20 -3.28712 | GGCCGGCGCCGATAA CCCCACCGGCATCGGCGGCGCC GGC GGCACCGGCGGCACCGGCGGAG CGGCCGGAGCCGGCG TERM 2085 3933299 - 3933354 + G 100 -26 -3.28712 | gap 1 CGGCGGCACAGGTGG CGCGGCCGGCGCCGGCGGGGCCGG-CG GGG CGACCGGTACCGGCGGCACCGGCGGCG TTGTCGGCGCCACCG TERM 2086 3934778 - 3934721 - g 72 -13.1 -3.14132 | gap 1 CGCCGGCGGCATCAA CGGGGCCGGCGGGGCCGGCGGCACCGGC GGG GCCGGTGGTGACGGCGCC-CCGGCGACC CTGATCGGCGGACCC TERM 2087 3935254 - 3935203 - g 82 -17 -3.01712 | GCGGCCTGGCCAACA CCGGCGGAACCGCGGGCAACGCCG GTAT CGGCGGGGCCGGCGGCCGCGGCGG CGACGGCGGGGCCGG TERM 2088 3935869 - 3935818 - g 82 -17 -3.01712 | GCGGCCTGGCCAACA CCGGCGGAACCGCGGGCAACGCCG GTAT CGGCGGGGCCGGCGGCCGCGGCGG CGACGGCGGGGCCGG PE_PGRS54 3931005 - 3936710 + | PE-PGRS family protein ilvX 3938424 - 3936877 - | hypothetical protein TERM 2089 3937266 - 3937224 - G 78 -15 -3.25102 | gap 4, overlap 3937222 ATTCCAGGCACAACA CCGG--GCGGTCGG-G-CGCGG CGA CCGCGGCACCGACCGCAGCCGG GATGCCGTAACCGAT TERM 2090 3937616 - 3937606 - G 70 -2.4 -4.62069 | overlap 3937611 CGGGTAGGCGAAAAA CGAC ACC GGCG ACCTGGCCCCGGCCA Rv3510c 3939257 - 3938421 - | hypothetical protein TERM 2091 3939465 - 3939475 + H 74 -4.6 -4.59773 | overlap 3939453 3939463 CGTTCGTGGCCACGC GGTG CTT CGCC TTTTTGCCCATCCCA TERM 2092 3939759 - 3939778 + GH 76 -10 -3.88498 | gap 1, overlap 3939736 3939736 GCGCCGATGAGGTGT CAGCG-CGC ATC GCGGCGCTG TTTGGTATGTACGGC TERM 2093 3940999 - 3941041 + GH 86 -15.5 -3.62597 | gap 2, overlap 3940999 CGGCACCGGCGGTGA C-GGC-GGCGCCCCCGGCAAC GGT GGCGCCGGGGGTGCCGGCCAG TTGTTGAGCCATAGC TERM 2094 3940999 - 3941040 + GH 78 -15.7 -2.77344 | gap 1, overlap 3940999 CGGCACCGGCGGTGA CGGC-GGCGCCCCCGGCAAC GGT GGCGCCGGGGGTGCCGGCCA GTTGTTGAGCCATAG TERM 2095 3941381 - 3941326 - gH 71 -12.5 -3.02511 | gap 3, overlap 3941296 GCTAGCCGCCCAAGA CGGCGGCCAAGGCGGCACCGGCGGCACC GGC GGCAACGCCGGCGCCGGC--GGC-ACCG GCTTCACCCAAGGCG TERM 2096 3941519 - 3941464 - gH 95 -18 -3.49668 | overlap 3941452 3941466 3941469 3941492 AAACGGCGCAGACAA CACCACCACCGCCGCCGCCGGCACCA CAGG CGGGGCCGGCGGGGCCGGCGGGGCCG GCGGAACCGGCGGAG TERM 2097 3941516 - 3941466 - gH 100 -20.3 -3.31905 | gap 1, overlap 3941452 3941464 3941469 3941492 ACGGCGCAGACAACA CCACCACCGCCGCCGCCGGCACCA CAGG CGGGGCCGGCGGGGCCGGCGG-GG CCGGCGGAACCGGCG TERM 2098 3941523 - 3941469 - gH 100 -28.4 -2.83249 | overlap 3941452 3941466 3941464 3941492 GCGCAGACAACACCA CCACCGCCGCCGCCGGCACCACAGGC GGG GCCGGCGGGGCCGGCGGGGCCGGCGG AACCGGCGGAGCCGC TERM 2099 3941548 - 3941492 - gH 95 -20.5 -2.78384 | overlap 3941452 3941466 3941464 3941469 GCCGCCGGCACCACA GGCGGGGCCGGCGGGGCCGGCGGGGCC GGC GGAACCGGCGGAGCCGCCGGCACCGGC ACCGGCGGCCAACAA TERM 2100 3941717 - 3941662 - gH 71 -12.5 -3.02511 | gap 3, overlap 3941632 GCTAGCCGCCCAAGA CGGCGGCCAAGGCGGCACCGGCGGCACC GGC GGCAACGCCGGCGCCGGC--GGC-ACCG GCTTCACCCCAAGGC PE_PGRS55 3939617 - 3941761 + | PE-PGRS family protein TERM 2101 3941856 - 3941801 - gT 95 -18 -3.49668 | overlap 3941789 3941803 3941806 3941829 AAACGGCGCAGACAA CACCACCACCGCCGCCGCCGGCACCA CAGG CGGGGCCGGCGGGGCCGGCGGGGCCG GCGGAACCGGCGGAA TERM 2102 3941853 - 3941803 - gT 100 -20.3 -3.31905 | gap 1, overlap 3941789 3941801 3941806 3941829 ACGGCGCAGACAACA CCACCACCGCCGCCGCCGGCACCA CAGG CGGGGCCGGCGGGGCCGGCGG-GG CCGGCGGAACCGGCG TERM 2103 3941860 - 3941806 - gT 100 -28.4 -2.83249 | overlap 3941789 3941803 3941801 3941829 GCGCAGACAACACCA CCACCGCCGCCGCCGGCACCACAGGC GGG GCCGGCGGGGCCGGCGGGGCCGGCGG AACCGGCGGAACCGG TERM 2104 3941885 - 3941829 - gT 75 -14.7 -2.78384 | overlap 3941789 3941803 3941801 3941806 GCCGCCGGCACCACA GGCGGGGCCGGCGGGGCCGGCGGGGCC GGC GGAACCGGCGGAACCGGCGGAGCCGCC GGCACCGGCACCGGC TERM 2105 3942711 - 3942659 - gT 70 -10.3 -3.5936 | overlap 3942651 3942650 3942660 3942689 CGGAAAGGGCGGAAA CGCCGGTGCCGGTGGTGCCGCGG GCAGCAA CGGCGGTACCGTCGGCGCCAACG GTACCGGCGGCGACG TERM 2106 3942720 - 3942689 - gT 86 -16.6 -3.14132 | overlap 3942659 3942660 TGCCGCGGGCAGCAA CGGCGGTACCGTCG GCGC CAACGGTACCGGCG GCGACGGCGGCAACG TERM 2107 3943167 - 3943109 - gT 91 -17.8 -3.18264 | CTCCTCAGCTACCAA CGGCGGCAGCGGCGGCGCCGGCGGCACC GGA GGCGACGGCGGCAGCGGCGGCGCCGGCG GCACCGGAGGCGCCG TERM 2108 3943360 - 3943303 - gT 100 -24.1 -3.03159 | gap 1, overlap 3943306 GCAACGGCGGCAATA TCACCGGCGGCACCGCGGGCACCG-CGG GGG CCGCCGGTAACGGCGGCGCCGCCGGAAA GGGTGGCGCCGGCGG TERM 2109 3943357 - 3943306 - gT 100 -28 -2.73994 | gap 1, overlap 3943303 ACGGCGGCAATATCA CCGGCGGCACCGCGGGCACCG-CGG GGG CCGCCGGTAACGGCGGCGCCGCCGG AAAGGGTGGCGCCGG PE_PGRS56 3941724 - 3944963 + | PE-PGRS family protein fadD18 3945748 - 3945092 - | fatty-acid-CoA ligase TERM 2110 3946223 - 3946267 + G 100 -19.2 -3.28712 | gap 1, overlap 3946224 GGCGGGGCCGGGGCA GCCGGGGCGCCCGGCCAGGCC GGCG GGCCTGGC-GGGCCCGCCGGA TTGTGGGGCAACGGC TERM 2111 3946224 - 3946266 + G 100 -22.7 -2.57132 | gap 1, overlap 3946223 GCGGGGCCGGGGCAG CCGGGGCGCCCGGCCAGGCC GGCG GGCCTGGC-GGGCCCGCCGG ATTGTGGGGCAACGG TERM 2112 3946467 - 3946502 + G 74 -14.6 -3.01712 | gap 1 TCGGTGGGGCCGGTG GCGGCACCGGCGGGGCC GGC GGCCGCGCCGA-GCTGC TGTTCGGCGCCGGCG TERM 2113 3946871 - 3946907 + G 70 -13 -3.01712 | gap 2 GGTGTCGGCGGCGTG GCTGGCCTCGGCGGGGCC GGT GGTGCCGC-G-GGCCAGC TCTTCAGCGCCAGCG TERM 2114 3947204 - 3947158 - g 82 -16.4 -3.28712 | overlap 3947120 GGCCGGCGCCGATAA CCCCACCGGCATCGGCGGCACC GGC GGTGACGGCGGCACCGGCGGAG CCGCCGGAGCCGGCG TERM 2115 3947555 - 3947509 - g 82 -16.4 -3.28712 | overlap 3947471 GGCCGGCGCCGATAA CCCCACCGGCATCGGCGGCACC GGC GGTGACGGCGGCACCGGCGGAG CGGCCGGAGCCGGCG TERM 2116 3947906 - 3947860 - g 82 -16.4 -3.28712 | overlap 3947824 GGCCGGCGCCGATAA CCCCACCGGCATCGGCGGCACC GGC GGTGACGGCGGCACCGGCGGAG CGGCCGGAGCCGGCG TERM 2117 3948038 - 3947980 - g 86 -17.8 -3.14468 | overlap 3947975 3948028 CGGCACCACAGGCAA CGCCGGTGTCGGCGGGGCCGGCGGTAGC AGC GGTGCCGGCGGCACCAACGGCTCCGGCG GCGCCGGCGGCACCG TERM 2118 3948146 - 3948100 - g 82 -16.4 -3.28712 | overlap 3948062 GGCCGGCGCCGATAA CCCCACCGGCATCGGCGGCACC GGC GGTGACGGCGGCACCGGCGGAG CGGCCGGAGCCGGCG TERM 2119 3948565 - 3948515 - g 77 -16.6 -2.52676 | overlap 3948542 3948543 GACGGCGGCAACGCA GGCACCGGCGCCGGCGACCCCGGC AAA GGCGGCACCGGCGGCACCGGCGGC ACCGGCGGCAGCGGC TERM 2120 3948598 - 3948542 - g 78 -14.1 -3.54424 | overlap 3948515 3948543 GGCGACCCCGGCAAA GGCGGCACCGGCGGCACCGGCGGCACC GGC GGCAGCGGCGGGGCCGGCGGTAGCGGC GGGGCCAACTTCAAC TERM 2121 3948598 - 3948543 - g 72 -15.2 -2.72511 | gap 1, overlap 3948515 3948542 GCGACCCCGGCAAAG GCGGC-ACCGGCGGCACCGGCGGCACC GGC GGCAGCGGCGGGGCCGGCGGTAGCGGC GGGGCCAACTTCAAC TERM 2122 3948763 - 3948722 - g 77 -13.5 -3.53811 | GGCACCGGCGGCAAA GGCGGCACCGGCGGGGCCG GCGA CGACTCCGCCGGCGGGACC GGCGGCACAGGCGGG TERM 2123 3948997 - 3948941 - g 89 -17.2 -3.53012 | overlap 3948979 GGGGCCGGCGGCAAA GGCGGGGCCGGCGGTAGCAG-CGGTGCC GGC GGCACCAACGGCT-CCGGCGGCGCCGGC GGGGCCGGCGGACAA TERM 2124 3949165 - 3949115 - g 77 -16.6 -2.52676 | overlap 3949142 3949143 GACGGCGGCAACGCA GGCACCGGCGCCGGCGACCCCGGC AAA GGCGGCACCGGCGGCACCGGCGGC ACCGGCGGCAGCGGC TERM 2125 3949198 - 3949142 - g 78 -14.1 -3.54424 | overlap 3949115 3949143 GGCGACCCCGGCAAA GGCGGCACCGGCGGCACCGGCGGCACC GGC GGCAGCGGCGGGGCCGGCGGTAGCGGC GGGGCCAACTTCAAC TERM 2126 3949198 - 3949143 - g 72 -15.2 -2.72511 | gap 1, overlap 3949115 3949142 GCGACCCCGGCAAAG GCGGC-ACCGGCGGCACCGGCGGCACC GGC GGCAGCGGCGGGGCCGGCGGTAGCGGC GGGGCCAACTTCAAC TERM 2127 3949573 - 3949544 - g 86 -16.3 -3.53012 | GGCCCCGGCGGCAAA GGCGGGGCCGGCG GCAA CGCCGGCACCGGC GGCACCAACGGCTCC TERM 2128 3949765 - 3949715 - g 77 -16.6 -2.52676 | overlap 3949742 3949743 GACGGCGGCAACGCA GGCACCGGCGCCGGCGACCCCGGC AAA GGCGGCACCGGCGGCACCGGCGGC ACCGGCGGCAGCGGC TERM 2129 3949798 - 3949742 - g 78 -14.1 -3.54424 | overlap 3949715 3949743 GGCGACCCCGGCAAA GGCGGCACCGGCGGCACCGGCGGCACC GGC GGCAGCGGCGGGGCCGGCGGTAGCGGC GGGGCCAACTTCAAC TERM 2130 3949798 - 3949743 - g 72 -15.2 -2.72511 | gap 1, overlap 3949715 3949742 GCGACCCCGGCAAAG GCGGC-ACCGGCGGCACCGGCGGCACC GGC GGCAGCGGCGGGGCCGGCGGTAGCGGC GGGGCCAACTTCAAC PE_PGRS57 3945794 - 3950263 + | PE-PGRS family protein fadD19 3952470 - 3950824 - | acyl-CoA synthetase echA19 3952544 - 3953335 + | enoyl-CoA hydratase Rv3517 3953431 - 3954270 + | hypothetical protein cyp142 3955521 - 3954325 - | cytochrome P450 monooxygenase 142 Rv3519 3955550 - 3956260 + | hypothetical protein Rv3520c 3957368 - 3956325 - | coenzyme F420-dependent oxidoreductase Rv3521 3957521 - 3958432 + | hypothetical protein TERM 2131 3959013 - 3959023 + G 83 -4.6 -5.03314 | overlap 3959011 CCGTCGGGGAACTGC TGGC ACG GCCG TTTTTTGCCGATCCG ltp4 3958448 - 3959512 + | lipid-transfer protein ltp3 3959529 - 3960713 + | acetyl-CoA acetyltransferase TERM 2132 3960735 - 3960714 - f 74 -13 -3.31461 | overlap 3960699 CAGGCAGCCGCATAA TCGCCCGG CGCGAT CCGGGCGA CGCCGCAGACCATCC Rv3524 3960755 - 3961786 + | hypothetical protein Rv3525c 3962324 - 3961800 - | siderophore-binding protein TERM 2133 3962808 - 3962770 - g 70 -11.7 -3.39327 | gap 1, opp_overlap 3962767 3962765 3962764 3962804, overlap 3962771 GGCGCACACCCAGAA TGGCGCGCAC-TCGGTCG TGGA CGACCGATGTGCGCAGCG GGCTGCTGTTTGTCT TERM 2134 3962807 - 3962771 - g 71 -15.2 -2.63382 | gap 1, opp_overlap 3962767 3962765 3962764 3962804, overlap 3962770 GCGCACACCCAGAAT GGCGCGCAC-TCGGTCG TGGA CGACCGATGTGCGCAGC GGGCTGCTGTTTGTC TERM 2135 3963473 - 3963441 - g 72 -12.9 -3.14132 | overlap 3963443 CGCCGCTGGTATGAA CAGTTTTATGTCGAC GTA GCCGACATAAAACCA GAGATGGTGGAGCGC TERM 2136 3963471 - 3963443 - g 78 -15.5 -3.13403 | overlap 3963441 CCGCTGGTATGAACA GTTTTATGTCGAC GTA GCCGACATAAAAC CAGAGATGGTGGAGC Rv3526 3962439 - 3963599 + | oxidoreductase Rv3527 3963605 - 3964054 + | hypothetical protein TERM 2137 3964065 - 3964119 + T 76 -10.5 -3.86194 | gap 1 GATAACGTCGCACAC CCGCTTGCCGCGG-GATACGGTGCCG CATC CGGCACGGTGCCACCGAGGCGTACGG TTTGTGACGGCGGTT Rv3528c 3965192 - 3964479 - | hypothetical protein TERM 2138 3964635 - 3964662 + g 76 -2.6 -4.90296 | gap 1 GATGTCTGGTATATC GCGCCACGGCTTG TCA TGATCCG-GGTGC TTTTTATCGAGTTTT TERM 2139 3965342 - 3965367 + r 91 -11.9 -4.36729 | gap 1 GATTGCCAGTCACGG GACCAC-GGCGC GCC GCGTCGGTGGTC TTTTCGCTTATTCGT TERM 2140 3965731 - 3965694 - R 70 -12.1 -3.14132 | gap 1 GCGGCGTGGGAGCAA CTGC-TGGGGGTAGCGAA CTG TTCACTACCCCCTGGCAA TCAGGTGGTCCCGTC Rv3529c 3967038 - 3965884 - | hypothetical protein Rv3530c 3967820 - 3967038 - | short chain dehydrogenase Rv3531c 3968944 - 3967817 - | hypothetical protein TERM 2141 3969932 - 3969896 - g 70 -10.7 -3.53012 | overlap 3969873 3969908 GTCTGCCGGCGCAAA GCGCCGAAGTCAGCCGC GCG ACCGCCAACGCCGGCGC CGCCGACGGCAACTG PPE61 3969343 - 3970563 + | PPE family protein PPE62 3972453 - 3970705 - | PPE family protein Rv3534c 3973592 - 3972552 - | 4-hydroxy-2-ketovalerate aldolase TERM 2142 3973351 - 3973341 - G 76 -2.4 -4.87626 | overlap 3973342 GGGCAACATCAAAAA CGCG ATC CGGG CCTCTTTCGCGGTCG Rv3535c 3974500 - 3973589 - | acetaldehyde dehydrogenase Rv3536c 3975296 - 3974511 - | hydratase Rv3537 3975369 - 3977060 + | 3-ketosteroid-delta-1-dehydrogenase Rv3538 3977062 - 3977922 + | dehydrogenase TERM 2143 3978405 - 3978356 - g 72 -13.5 -3.14132 | gap 1, opp_overlap 3978382 GCGCTGGCCTATGAA GCGGCGTTCGCCGCAACCGTACAC CCG GCGCT-GGTCGCGGCGAACCGCGC CCTCGTGGCCTGGTT PPE63 3978059 - 3979498 + | PPE family protein ltp2 3980659 - 3979499 - | lipid-transfer protein Rv3541c 3981048 - 3980659 - | hypothetical protein Rv3542c 3981980 - 3981045 - | hypothetical protein TERM 2144 3981409 - 3981396 - G 93 -9.5 -4.85599 | TCCATCCCAGAAAAA CGCGG TGTC CCGCG ACGACGAGGGACGCA fadE29 3983140 - 3981977 - | acyl-CoA dehydrogenase FADE29 fadE28 3984144 - 3983125 - | acyl-CoA dehydrogenase FADE28 cyp125 3985445 - 3984144 - | cytochrome P450 125 TERM 2145 3985152 - 3985164 + g 70 -6.2 -4.2828 | GTCGTTCTTGAATCG CGGG ATCAC CCCG TTTTCGTAGCTGGAG TERM 2146 3985787 - 3985763 - g 77 -12.1 -3.74526 | opp_overlap 3985778 GGAGCAATCCAACAA CATCAGCCGGG TGG CCTGGCTGACG GCCGGTTTGCCCGAA fadA5 3985557 - 3986732 + | acetyl-CoA acetyltransferase Rv3547 3986844 - 3987299 + | hypothetical protein Rv3548c 3988296 - 3987382 - | short chain dehydrogenase Rv3549c 3989098 - 3988319 - | short chain dehydrogenase echA20 3989153 - 3989896 + | enoyl-CoA hydratase Rv3551 3989896 - 3990774 + | CoA-transferase subunit alpha Rv3552 3990771 - 3991523 + | CoA-transferase subunit beta TERM 2147 3992101 - 3992145 + G 90 -17.8 -3.61398 | gap 1, overlap 3992136 TTGCCGTCGGTGCTG GACGCC-GTGGCGGGCACCGG CATC CCGGTGATCGCCGCCGGCGGC TTCTTCGACGGGCGC Rv3553 3991621 - 3992688 + | oxidoreductase fdxB 3992685 - 3994742 + | electron transfer protein FdxB Rv3555c 3995699 - 3994830 - | hypothetical protein fadA6 3996964 - 3995804 - | acetyl-CoA acetyltransferase TERM 2148 3996706 - 3996728 + g 70 -13.4 -3.04144 | TGGATCCGCACTGGC GGTCCACGGT GAC ACCGGGGACC TCTTCGGGATAGCCG Rv3557c 3997631 - 3997029 - | TetR family transcriptional regulator TERM 2149 3998158 - 3998204 + G 76 -6.5 -4.56597 | overlap 3998179 GGCAGGCGTGGCAGG GCCCGGCGT-CGGCGGCGATG GCCGCCG CGGCGGCGCCGTATGC-GGGC TTTTTGACCACAGCC PPE64 3997980 - 3999638 + | PPE family protein Rv3559c 4000435 - 3999647 - | short chain dehydrogenase fadE30 4001589 - 4000432 - | acyl-CoA dehydrogenase FADE30 fadD3 4001637 - 4003160 + | acyl-CoA synthetase fadE31 4003161 - 4004294 + | acyl-CoA dehydrogenase FADE31 TERM 2150 4004507 - 4004476 - g 75 -13.8 -3.32844 | gap 1, opp_overlap 4004473 4004478 GGGCGTAGCGGAGAA GTTCGA-CGGACTGG GTG CCAGTCCGGTCGATC TGGTTGTCGCGCTCG TERM 2151 4004478 - 4004505 + G 74 -15 -2.96452 | gap 1, opp_overlap 4004476, overlap 4004473 GCGTAGCGGAGAAGT TCGA-CGGACTGG GTG CCAGTCCGGTCGA TCTGGTTGTCGCGCT TERM 2152 4005096 - 4005077 - g 70 -10.6 -3.53811 | opp_overlap 4005077 GTCAGCGCCGCCAAA GCCGCCGC GAGC GAGGCGGC TCTGCTGGCGGCACG fadE32 4004291 - 4005250 + | acyl-CoA dehydrogenase FADE32 fadE33 4005247 - 4006203 + | acyl-CoA dehydrogenase FADE33 aspB 4006200 - 4007366 + | aspartate aminotransferase nat 4008182 - 4007331 - | arylamine n-acetyltransferase nat (arylamine acetylase) Rv3566A 4008433 - 4008167 - | hypothetical protein TERM 2153 4008705 - 4008664 - R 75 -14.5 -2.79183 | opp_overlap 4008664 4008680 4008681, overlap 4008671 4008681 GCGACGGCGAGCAGA CGCAAAATCGCCCAACACG CCCG CAAAATGGGCGATTTTGCG TCTGCTCGCGCCACT Rv3567c 4009282 - 4008719 - | oxidoreductase bphC 4010199 - 4009297 - | biphenyl-2,3-diol 1,2-dioxygenase TERM 2154 4009673 - 4009628 - G 76 -8.7 -4.19678 | opp_overlap 4009635 TTACAGCCGAAGAAA CGCAGCCAGGCTGGCGGCCCG TCGG CGGGCCGCCCTACCATCTGTG GCGGTAGCCGCATCG TERM 2155 4010081 - 4010100 + g 70 -10.6 -3.60098 | opp_overlap 4010082, overlap 4010082 TCCATCCGCAGATAC AGGGCCCC TTCT GGGGCCCC TTTGCCCTCGACCAT TERM 2156 4010099 - 4010082 - G 72 -14.1 -2.99471 | opp_overlap 4010081 4010082 CCATCCGCAGATACA GGGCCCC TTCT GGGGCCC CTTTGCCCTCGACCA bphD 4011071 - 4010196 - | 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase BphD Rv3570c 4012270 - 4011086 - | oxidoreductase TERM 2157 4011568 - 4011579 + g 72 -5.8 -4.3739 | TAGTGGGATGCATTG TGCC CCAT GGCA TTTTATAGACAGGTG hmp 4012417 - 4013493 + | hemoglobine-like protein TERM 2158 4013754 - 4013699 - g 70 -9.8 -3.72576 | gap 3, opp_overlap 4013709 4013716 CGTCGCTGGAGCAAA TCTGCGCACACCCGACGGCCC-GACGG GCTTT CCGCCCGGGCTGT-GGGCGCGC-CAAA CCACCGAGATCCGTT Rv3572 4013511 - 4014041 + | hypothetical protein fadE34 4016212 - 4014077 - | acyl-CoA dehydrogenase FADE34 TERM 2159 4016737 - 4016719 - g 78 -10.2 -4.14739 | overlap 4016720 GCATCGACGCGAAAA CCGACCGC TCC GCGGTCGC CGGGGCCACCCCCTT TERM 2160 4016736 - 4016720 - g 73 -13.7 -3.08522 | overlap 4016719 CATCGACGCGAAAAC CGACCGC TCC GCGGTCG CCGGGGCCACCCCCT Rv3574 4016484 - 4017083 + | transcriptional regulatory protein TetR-family Rv3575c 4018168 - 4017089 - | transcriptional regulatory protein LacI-family lppH 4018358 - 4019071 + | lipoprotein LppH Rv3577 4019262 - 4020128 + | hypothetical protein arsB2 4020142 - 4021383 + | arsenical PUMP integral membrane protein ArsB2 TERM 2161 4021403 - 4021444 + T 100 -27.7 -2.78463 | opp_overlap 4021403 4021410, overlap 4021410 AAGGGCGCGAGCAGA CGCAGAATCGCATGATTTG AGCT CAAATCATGCGATTCTGCG TCTGCTCGCGAGGCT TERM 2162 4021444 - 4021403 - T 100 -27.7 -2.78715 | opp_overlap 4021403 4021410, overlap 4021410 AAGGGCGCGAGCAGA CGCAGAATCGCATGATTTG AGCT CAAATCATGCGATTCTGCG TCTGCTCGCGAGGCT TERM 2163 4021410 - 4021437 + T 85 -15.8 -3.40299 | opp_overlap 4021403 4021410, overlap 4021403 CGAGCAGACGCAGAA TCGCATGATTTG AGCT CAAATCATGCGA TTCTGCGTCTGCTCG TERM 2164 4021437 - 4021410 - T 85 -15.8 -3.40299 | opp_overlap 4021410 4021403, overlap 4021403 CGAGCAGACGCAGAA TCGCATGATTTG AGCT CAAATCATGCGA TTCTGCGTCTGCTCG Rv3579c 4022393 - 4021425 - | tRNA/rRNA methyltransferase cysS 4023803 - 4022394 - | cysteinyl-tRNA synthetase ispF 4024347 - 4023868 - | 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase ispD 4025039 - 4024344 - | 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase Rv3583c 4025544 - 4025056 - | transcription factor TERM 2165 4026169 - 4026181 + G 85 -7.7 -4.82901 | overlap 4026166 4026165 GACGCTCGACTGCCC GCATC CGG GATGC TTTTTGTCGGGACGC lpqE 4025830 - 4026378 + | lipoprotein LpqE radA 4026444 - 4027886 + | DNA repair protein RadA Rv3586 4027891 - 4028967 + | DNA integrity scanning protein DisA Rv3587c 4029762 - 4028968 - | hypothetical protein Rv3588c 4030494 - 4029871 - | carbonic anhydrase mutY 4030493 - 4031407 + | adenine glycosylase MutY PE_PGRS58 4033158 - 4031404 - | PE-PGRS family protein TERM 2166 4031792 - 4031816 + g 82 -17.1 -3.01712 | CCCGCACCCCCGACA CCGCCGACACC CCC GGTGCCGGCGG TGTTGGCGCCAGCCC TERM 2167 4031892 - 4031866 - G 83 -2.9 -5.14563 | overlap 4031867 TCCGCTACCAAAAAA GGTCAGC-GTGCC GGT GGCGCCGCCG-CC AATGCCACCATTGCC TERM 2168 4032265 - 4032293 + g 71 -12.4 -3.27704 | gap 1, overlap 4032258 4032288 CAGCCCTGCGCCACC GCTACCGGCGCCG TTGT TGGCGCCGG-GGC TTCCGTTTGCCGCCT Rv3591c 4034042 - 4033269 - | hydrolase TB11.2 4034057 - 4034374 + | hypothetical protein TERM 2169 4034393 - 4034375 - g 75 -13.1 -3.3676 | GGCAAGACTGCATAA CCGGCGC GCGGG GCGCCGG ATGCTGGCGTTAAGC lpqF 4034352 - 4035710 + | lipoprotein LpqF TERM 2170 4036664 - 4036618 - g 74 -12.3 -3.62046 | gap 1, overlap 4036587 4036585 4036640 CGAGCTCGGCAATAA GGTCGACGCCCTGGC-CGCA AAACTCGA CGCGCGCGAGGGCCTCGACC GGCCCAGTGACACTC Rv3594 4035857 - 4036684 + | hypothetical protein PE_PGRS59 4038050 - 4036731 - | PE-PGRS family protein clpC1 4040704 - 4038158 - | ATP-dependent protease ATP-binding subunit ClpC1 TERM 2171 4040973 - 4040938 - R 100 -24.8 -3.5774 | opp_overlap 4040941, overlap 4040939 4040941 AGCGAACGCGGCAAA GTACCGGCGCCCAGGC TTTC GCCTGGGCGCCGGTAG CCAAATGTCAGGTCG TERM 2172 4040972 - 4040939 - R 100 -28.3 -2.74322 | opp_overlap 4040941, overlap 4040938 4040941 GCGAACGCGGCAAAG TACCGGCGCCCAGGC TTTC GCCTGGGCGCCGGTA GCCAAATGTCAGGTC TERM 2173 4040970 - 4040941 - R 100 -26.5 -2.9162 | opp_overlap 4040941, overlap 4040939 4040938 GAACGCGGCAAAGTA CCGGCGCCCAGGC TTTC GCCTGGGCGCCGG TAGCCAAATGTCAGG lsr2 4041319 - 4040981 - | iron-regulated LSR2 protein precursor lysS 4042940 - 4041423 - | lysyl-tRNA synthetase TERM 2174 4041835 - 4041852 + g 73 -12.7 -3.42699 | TCCTCGATGAGTTTG CCGTGGC CGAA GCCACGG TTGTCATGAATCGCT TERM 2175 4042590 - 4042616 + g 73 -10.8 -3.6682 | opp_overlap 4042571 4042595 CGCGCCATGCACGTA GACGATGTCGCC CAG GTCGACATCGGC TTTCCATGCGTCGAG Rv3599c 4043035 - 4042952 - | hypothetical protein Rv3600c 4043859 - 4043041 - | pantothenate kinase panD 4044281 - 4043862 - | aspartate alpha-decarboxylase panC 4045210 - 4044281 - | pantoate--beta-alanine ligase Rv3603c 4046118 - 4045207 - | hypothetical protein TERM 2176 4045248 - 4045270 + g 93 -16.3 -3.91144 | opp_overlap 4045232 CCGCGGGGGCGTGTG CGCGCTGCG CGGTC CGCAGCGCG TTTATCCGGTATGCC Rv3604c 4047496 - 4046303 - | transmembrane protein TERM 2177 4046431 - 4046412 - G 75 -11.4 -3.64703 | TCCCGCGCATGCAAA CCACCGGA GTCA TCCGGCGG CGTGTCCGCGGTGCG TERM 2178 4046655 - 4046691 + g 100 -19.4 -3.66178 | gap 1, overlap 4046658 CTGGCATGCCGGGCG CGGCGCCGGC-GCCCCG GCGG CGGGGCCGCCGGCGTGG TTTCGGGTTCGACGG TERM 2179 4046658 - 4046688 + g 100 -21.9 -2.94412 | gap 1, overlap 4046655 GCATGCCGGGCGCGG CGCCGGC-GCCCCG GCGG CGGGGCCGCCGGCG TGGTTTCGGGTTCGA Rv3605c 4048181 - 4047705 - | hypothetical protein TERM 2180 4048162 - 4048118 - G 73 -14.2 -3.14051 | opp_overlap 4048118 4048117, overlap 4048116 4048120 4048122 GCACCGCCACCAACA GATATCCCACCGCCGCGGCG CCGAC CACCGCGGCGGTCAGATCAC GTTTTCGGGTCGGTC TERM 2181 4048160 - 4048120 - G 78 -15.4 -3.13073 | opp_overlap 4048118 4048117, overlap 4048118 4048116 4048122 ACCGCCACCAACAGA TATCCCACCGCCGCGGCG CCGAC CACCGCGGCGGTCAGATC ACGTTTTCGGGTCGG TERM 2182 4048158 - 4048122 - G 86 -18 -3.12449 | opp_overlap 4048118 4048117, overlap 4048120 4048118 4048116 CGCCACCAACAGATA TCCCACCGCCGCGGCG CCGAC CACCGCGGCGGTCAGA TCACGTTTTCGGGTC folK 4048747 - 4048181 - | 2-amino-4-hydroxy-6-hydroxymethyldihydropteridi ne pyrophosphokinase FolK folB 4049145 - 4048744 - | dihydroneopterin aldolase FolB folP1 4049980 - 4049138 - | dihydropteroate synthase folE 4050585 - 4049977 - | GTP cyclohydrolase I TERM 2183 4050112 - 4050144 + g 83 -3.3 -5.14563 | GCACAGATGCTCAGC CTCGATCACCACG ATTACCC CGCGTGGATCGAG TTTTTTCATCAGGGC ftsH 4052883 - 4050601 - | membrane-bound protease FTSH (cell division protein) TERM 2184 4052978 - 4052964 - gR 77 -12.8 -3.59979 | overlap 4052934 4052935 CGTGGCGATCGCAAA CCCGGC GGA GCCGGG TGCAGCGGGTCGCCA Rv3612c 4053847 - 4053518 - | hypothetical protein Rv3611 4052950 - 4053603 + | hypothetical protein Rv3613c 4054042 - 4053881 - | hypothetical protein Rv3614c 4054696 - 4054142 - | hypothetical protein Rv3615c 4055123 - 4054812 - | hypothetical protein Rv3616c 4056375 - 4055197 - | hypothetical protein TERM 2185 4055987 - 4055968 - G 78 -10 -4.07568 | gap 1 CGCGCCCGCGCAAAA CGG-CGCCT GGA AGGCGGCCG ATAGGGCGTGCCCGA TERM 2186 4056240 - 4056252 + g 70 -2.6 -4.60487 | opp_overlap 4056230 4056229 GAAACGCTGCTGCCA GCTC CTCCA GGGC TTTTTCGAAGTACTC ephA 4057733 - 4058701 + | epoxide hydrolase EphA TERM 2187 4059821 - 4059798 - g 76 -14.6 -3.1247 | overlap 4059812 ATGGGCTAGAGGCAA GCGCGACCAA TTGA TTGGCCGCGC CGGCGAAGCGGTCGT Rv3618 4058698 - 4059885 + | monooxygenase esxV 4060268 - 4059984 - | putative ESAT-6 like protein ESXV (ESAT-6 like protein 1) esxW 4060591 - 4060295 - | putative ESAT-6 like protein ESXW (ESAT-6 like protein 10) PPE65 4061889 - 4060648 - | PPE family protein PE32 4062198 - 4061899 - | PE family protein lpqG 4062527 - 4063249 + | lipoprotein LpqG hpt 4063904 - 4063254 - | hypoxanthine-guanine phosphoribosyltransferase mesJ 4064872 - 4063901 - | cell cycle protein MESJ Rv3626c 4065903 - 4064851 - | hypothetical protein TERM 2188 4065034 - 4065054 + g 88 -14.7 -3.96148 | opp_overlap 4065026 CAGCAGAGCTCGCAC CAGCCGCTG CAG CGGCGGCTG TTTGTGATGACGACG Rv3627c 4067285 - 4065900 - | hypothetical protein ppa 4067423 - 4067911 + | inorganic pyrophosphatase Rv3629c 4069054 - 4067957 - | integral membrane protein TERM 2189 4068075 - 4068037 - G 77 -3.7 -4.82901 | gap 1, overlap 4068038 CCGCCCCGATAAAAA CCACCCCCACCGAAGCGG TGAC CCACT-CGGGGACGGCGA ATCGGTGGTCGATGG Rv3630 4069175 - 4070470 + | integral membrane protein Rv3631 4070514 - 4071239 + | transferase Rv3632 4071236 - 4071580 + | hypothetical protein Rv3633 4071791 - 4072666 + | hypothetical protein galE1 4073611 - 4072667 - | UDP-glucose 4-epimerase GALE1 (galactowaldenase) (UDP-galactose 4-epimerase) (uridine diphosphate galactose 4-epimerase) (uridine diphospho-galactose 4-epimerase) TERM 2190 4072822 - 4072875 + g 84 -13.8 -3.91084 | opp_overlap 4072818 4072861 GGTGGAACTCAGGGT CGTCGGGCCCGCCGACAGC-CGCGGC CACC GCCGAATGCAGTTGGCG-GTCCGACG TTTCCTTACCGGTGC TERM 2191 4074763 - 4074800 + G 76 -6.1 -4.56597 | gap 1, opp_overlap 4074731, overlap 4074728 4074763 4074766 GGCTGGACGCCTCGC CGGCCCGAGCCGTTGCGA CAG TCGCTTCGGC-CGTGTTG TTTTTGACCAGCAGC TERM 2192 4074766 - 4074797 + G 73 -6.4 -4.40561 | gap 1, opp_overlap 4074731, overlap 4074728 4074763 4074763 TGGACGCCTCGCCGG CCCGAGCCGTTGCGA CAG TCGCTTCGGC-CGTG TTGTTTTTGACCAGC Rv3635 4073634 - 4075409 + | transmembrane protein Rv3636 4075752 - 4076099 + | transposase Rv3637 4076484 - 4076984 + | transposase TERM 2193 4077575 - 4077565 - g 70 -8.2 -3.9392 | opp_overlap 4077568 CGTCACGTCAAATAA GCCC TTC GGGC GCTGGGGCGAAGTAT Rv3638 4076984 - 4077730 + | transposase Rv3639c 4078450 - 4077884 - | hypothetical protein Rv3640c 4079749 - 4078520 - | transposase TERM 2194 4078895 - 4078838 - G 77 -13 -3.54424 | GCCGATCTTGGGAAA CGACGCGGCGAGGCGAT-CACG-GACCC CCTCCC AGGTCGCGTGCACCGCCTCG--GCGTCG GGTGCCGAGAAAATC fic 4080560 - 4079925 - | cell filamentation protein FIC Rv3642c 4080765 - 4080571 - | hypothetical protein Rv3643 4081160 - 4081351 + | hypothetical protein Rv3644c 4082721 - 4081516 - | DNA polymerase III subunit delta' Rv3645 4082807 - 4084456 + | transmembrane protein topA 4087257 - 4084453 - | DNA topoisomerase I TERM 2195 4085087 - 4085108 + g 84 -13.7 -3.91897 | opp_overlap 4085078 CCAAACCGGCCTTCC CTGGCCACG ATCT CGTGGCCGG TTTCTGGGTCCAAGC Rv3647c 4088188 - 4087610 - | hypothetical protein TERM 2196 4088208 - 4088179 - G 78 -10.1 -4.07618 | gap 1, opp_overlap 4088203, overlap 4088203 CGGCGAAGAAGGAAA GCTGGCTCACC-TC ACC GACAGTAAGCCAGC GAGCGGGTCGCTGGC TERM 2197 4088203 - 4088223 + r 77 -12.6 -3.57144 | opp_overlap 4088179 4088203 CCTCACCGACAGTAA GCCAGCGA GCGGG TCGCTGGC TTTAGGCATCCGGCG TERM 2198 4088223 - 4088203 - R 74 -12.6 -3.2794 | opp_overlap 4088203, overlap 4088179 CCTCACCGACAGTAA GCCAGCGA GCGGG TCGCTGGC TTTAGGCATCCGGCG TERM 2199 4088274 - 4088301 + r 100 -20 -4.7173 | opp_overlap 4088274 GCGAGCAGACGTAAA GCCCCCAAAACG GAAC CGTTTTGGGGGC TTTTTGCGTCTGCTC TERM 2200 4088301 - 4088274 - R 100 -20 -3.727 | opp_overlap 4088274 GCGAGCAGACGTAAA GCCCCCAAAACG GAAC CGTTTTGGGGGC TTTTTGCGTCTGCTC cspA 4088531 - 4088328 - | cold shock protein A TERM 2201 4089326 - 4089338 + G 73 -9.1 -3.99324 | CTGGGCTGTGCTGTT GCGGA ATC TCCGC TTTGTGATCGTCGAC Rv3649 4088781 - 4091096 + | helicase PE33 4091233 - 4091517 + | PE family protein Rv3651 4091841 - 4092878 + | hypothetical protein TERM 2202 4092899 - 4092932 + F 83 -14.6 -3.40899 | opp_overlap 4092903, overlap 4092887 4092903 AGTCCTTTCGACTCA GCAACGGCAGCTGC CGATCC GCGGCTACCGTTGC TTGTCGTGAACGGTT PE_PGRS60 4093632 - 4093946 + | PE-PGRS family-related protein PE_PGRS61 4093940 - 4094527 + | PE-PGRS family-related protein Rv3654c 4094914 - 4094660 - | hypothetical protein Rv3655c 4095300 - 4094923 - | hypothetical protein TERM 2203 4095020 - 4094983 - G 100 -28.5 -2.73364 | TCGCGACGGCAAGCA CGGTGGCCGAGCCGCGG TCGA CCCCGGCTCGGCCACCG AAATTGCCCTAGCAG Rv3656c 4095530 - 4095324 - | hypothetical protein Rv3657c 4096115 - 4095540 - | hypothetical protein TERM 2204 4095674 - 4095624 - G 73 -11.1 -3.6279 | overlap 4095629 4095655 AAACGCCGGTAAGAA GC-ACAGTCCCAGCGGGCCGGCG ATCAGCA CACCGGCCCGCTCGG-CGGCCGC CGCGGCCGCCTGTGC TERM 2205 4095668 - 4095629 - G 74 -15 -3.01745 | gap 1, overlap 4095624 4095655 CCGGTAAGAAGCACA GTCCCAGCGGGCCGGCG ATCAGCA CACCGGCCCGCTCGG-C GGCCGCCGCGGCCGC TERM 2206 4095928 - 4095887 - G 72 -14.3 -3.01712 | gap 1 CGGCCCGGCGCAACA CGCGCGCCAGCCGCGGCGGC GCG ACCGCAGCGG-TGGCGGCCG CGGCCGTCGACACCG Rv3658c 4096939 - 4096139 - | transmembrane protein Rv3659c 4097994 - 4096936 - | hypothetical protein Rv3660c 4099148 - 4098096 - | hypothetical protein TERM 2207 4099716 - 4099730 + G 79 -7 -4.59773 | overlap 4099718 GGCACCGCTCCGCGA GCCCGC ACC GCGGCC TTTTTCGACCTGGAC Rv3661 4099647 - 4100510 + | hypothetical protein TERM 2208 4100941 - 4100977 + T 100 -17.3 -5.54907 | overlap 4100944 CCGAGAACCGTGTTG GTGGGCGGCGATTCGAG TTC TTCGGGTCGCCGCCTGC TTTTTGTTTTCTGGA TERM 2209 4100944 - 4100974 + T 93 -17.6 -3.51407 | overlap 4100941 AGAACCGTGTTGGTG GGCGGCGATTCGAG TTC TTCGGGTCGCCGCC TGCTTTTTGTTTTCT Rv3662c 4102035 - 4101265 - | hypothetical protein TERM 2210 4101644 - 4101617 - G 73 -11.2 -3.67976 | GCGAGCAACTCCAAA CGCGGGCCAACG TCGG CATCGGACCGCG GACGCCCAAGCCGAT dppD 4103678 - 4102032 - | peptide ABC transporter ATP-binding protein dppC 4104475 - 4103675 - | peptide ABC transporter transmembrane protein dppB 4105457 - 4104531 - | peptide ABC transporter transmembrane protein TERM 2211 4104838 - 4104785 - G 71 -12.3 -3.31322 | gap 1 GCGAATTGCGCAGAA TGTGCACCGTCACCACC-CGGGGCCG CGA CAACCCCTTGGCGGTGGCGGTGCGGA CATAGTCAGCGTGTG dppA 4107084 - 4105459 - | periplasmic dipeptide-binding lipoprotein DppA acs 4107792 - 4109747 + | acetyl-CoA synthetase TERM 2212 4109784 - 4109819 + T 74 -10.2 -3.68936 | opp_overlap 4109782 4109786, overlap 4109809 TCAGCCCAGCCAACT CAGGCCGGTACCGGGA CGAA TCCCGCGCCCGGCCGG TTCTTGGCGTTGATG Rv3668c 4110481 - 4109783 - | protease TERM 2213 4111051 - 4111075 + G 90 -2.7 -5.51353 | overlap 4111054 CTTCATCTCCTCGCT GGTGGTCGGGT TCT ACTCCACCTTC TTTTTCTTCTTTTTC TERM 2214 4111054 - 4111072 + G 81 -5.2 -4.74161 | overlap 4111051 CATCTCCTCGCTGGT GGTCGGGT TCT ACTCCACC TTCTTTTTCTTCTTT Rv3669 4110827 - 4111345 + | transmembrane protein TERM 2215 4111641 - 4111631 - g 70 -8.2 -3.91897 | overlap 4111632 GGCGGCAGCGACAAA CCGC CCC GCGG GTACGACGGCTGGAC ephE 4111346 - 4112329 + | epoxide hydrolase EphE Rv3671c 4113515 - 4112322 - | membrane-associated serine protease TERM 2216 4112692 - 4112645 - G 70 -11.9 -3.44794 | overlap 4112615 4112633 4112681 4112684 AACCCAGCACCACAA CGTCGGCACCGGTTTTCGCCG GCTCCG CAGCGAAGACCAGCGGCGGCG GCGGCAAGTGCGGAA Rv3672c 4114342 - 4113521 - | hypothetical protein TERM 2217 4114099 - 4114065 - G 77 -16.4 -2.62184 | overlap 4114097 TCGTCTGGGACACCA CCGTCGCCTGGCCCGG CCT CCGGGCCAGAAAACAG CACCAGAACGGCCGC Rv3673c 4115157 - 4114474 - | membrane-anchored thioredoxin-like protein TERM 2218 4114907 - 4114930 + g 70 -11 -3.55444 | GCGCCCGGACCGTTA CCTGCCGC GGGACAGG GCGGCAGG TTTGCGCGCTGCCGG nth 4115894 - 4115157 - | endonuclease III Rv3675 4116002 - 4116379 + | hypothetical protein Rv3676 4116478 - 4117152 + | CRP/FNR family transcriptional regulator Rv3677c 4118052 - 4117258 - | hydrolase Rv3678c 4118514 - 4118059 - | hypothetical protein Rv3678A 4118691 - 4118530 - | hypothetical protein Rv3679 4118776 - 4119798 + | anion transporter ATPase Rv3680 4119795 - 4120955 + | anion transporter ATPase whiB4 4121554 - 4121198 - | transcriptional regulatory protein WHIB-like WHIB4 ponA2 4121916 - 4124348 + | bifunctional membrane-associated penicillin-binding protein 1A/1B TERM 2219 4125115 - 4125136 + G 75 -13.7 -3.28924 | GGCCGGCCACACCCA CGGCGGGCA GCTG TGCCTGCCG TTGTACGGGGCGCTG Rv3683 4124417 - 4125376 + | hypothetical protein TERM 2220 4126131 - 4126164 + G 71 -9.5 -3.87373 | gap 1, overlap 4126140 CACATCGTCCCGTAT CGAGGGCATCGGCCGG CCG CGGGTCGA-GCCGTCG TTTCTGCCCGGTGTG Rv3684 4125439 - 4126479 + | lyase cyp137 4128725 - 4127295 - | cytochrome P450 137 Rv3686c 4129083 - 4128751 - | hypothetical protein rsfB 4129691 - 4129323 - | anti-anti-sigma factor RSFB (anti-sigma factor antagonist) (regulator of sigma F B) Rv3688c 4130357 - 4129893 - | hypothetical protein TERM 2221 4130114 - 4130139 + gH 76 -8.1 -4.24204 | GTGCCTCGGCATGCT CGGTGGCGGCG AGCT CACCGCGGCCG TTTTGGGTGTAGATC TERM 2222 4131658 - 4131644 - gH 74 -12.8 -3.29829 | CAGACCGGCTTAGAA GCCGGC CCC GCCGGC GGGCCCGCCCCGGTG Rv3689 4130357 - 4131712 + | transmembrane protein Rv3690 4131739 - 4132392 + | hypothetical protein Rv3691 4132518 - 4133519 + | hypothetical protein TERM 2223 4133688 - 4133654 - g 74 -12.2 -3.50853 | CGGGCTGAAGCAGAA TCGGCACGTGATGC ATTGCTG GCATTACGCGCCGA GGTCGCCAAGGCCGT moxR2 4133516 - 4134592 + | methanol dehydrogenase transcriptional regulatory protein MOXR2 TERM 2224 4134708 - 4134656 - f 93 -19.2 -3.14132 | gap 1, overlap 4134684 CTTGCGGGGGACGAA GCGATGGGGTGGGGGTACGCCCCCA CAAG TGGGAG-GTACCCCCACCCGCTTGC GGGGGAGAGCGGCGC TERM 2225 4135318 - 4135369 + G 79 -16.5 -2.82516 | gap 1, overlap 4135304 TGCGCGAGTATGTCG TCGGCGACGACGTCCGCTCGATCG ATTGG CGCGCGAGCGCACGCCG-CGCCGA TGTCATGGTCCGCAC Rv3693 4134726 - 4136048 + | hypothetical protein Rv3694c 4137114 - 4136122 - | transmembrane protein TERM 2226 4136273 - 4136257 - G 74 -7.9 -4.1822 | GGCGATCCGAACAAA CGTCGGC AAC GGCGACG GTGTCACCACCGCCT Rv3695 4137206 - 4138138 + | hypothetical protein glpK 4139755 - 4138202 - | glycerol kinase TERM 2227 4138570 - 4138586 + g 70 -11.5 -3.36273 | TCGCCTCCAGCGTTG CGCGCGC CAG GTGCGCG TTGGTGTTGAACCGC TERM 2228 4138688 - 4138664 - G 75 -9.2 -4.11371 | opp_overlap 4138664, overlap 4138654 4138679 4138682 GAACAGCCCGGAAAA CGCCGGCACG AAATA CATGCCGCCG TTGTCGGGGACCTGG Rv3697c 4140242 - 4139805 - | hypothetical protein Rv3698 4140493 - 4142022 + | hypothetical protein Rv3699 4142044 - 4142745 + | hypothetical protein Rv3700c 4143920 - 4142748 - | hypothetical protein Rv3701c 4144916 - 4143951 - | hypothetical protein Rv3702c 4145614 - 4144913 - | hypothetical protein Rv3703c 4146891 - 4145614 - | hypothetical protein gshA 4148186 - 4146888 - | glutamate--cysteine ligase gshA (gamma-glutamylcysteine synthetase) (gamma-ECS) (GCS) (gamma-glutamyl-L-cysteine synthetase) Rv3705c 4148962 - 4148318 - | hypothetical protein TERM 2229 4149075 - 4149043 - R 86 -13.6 -3.86252 | overlap 4149071 4149072 GCCGACCAAACAGAA GGCCCTTTTCTTGA ACGAG TCAAGAAAAGGGGC TGGTGCGCCCGGCCG TERM 2230 4149109 - 4149071 - R 75 -4.3 -4.69656 | overlap 4149043 4149072 AACGAGTCAAGAAAA GGGGCTGGTGCGCCC GGCCGCTAG GGGCGCGCCGGCGCG GTGGTGGGACCCGGA Rv3705A 4149480 - 4149091 - | proline rich protein TERM 2231 4149377 - 4149400 + g 75 -7.3 -4.30576 | ATCACCACCCACGCT GCGGCCCGG TAGAGC CTGGGCGGC TTTTCCTGCTGCGGC TERM 2232 4149548 - 4149580 + r 87 -17.1 -2.86539 | gap 1, overlap 4149545 GTGCCATGAACTGGT GCAGCCCGGTG-CC TTGGGT GGACACCGGGCTGC TGGTTGTCGGTTACG Rv3706c 4149911 - 4149591 - | proline rich protein Rv3707c 4151040 - 4150030 - | hypothetical protein asd 4152217 - 4151180 - | aspartate-semialdehyde dehydrogenase ask 4153483 - 4152218 - | aspartate kinase TERM 2233 4153120 - 4153093 - G 74 -7.6 -4.25283 | opp_overlap 4153097, overlap 4153096 ATCCGGCCACCAAAA CGACCCGCCCCT CCTC AAGGGCGGTTTG CAGCCGCCCCGGCGT leuA 4153860 - 4155674 + | 2-isopropylmalate synthase dnaQ 4156729 - 4155740 - | DNA polymerase III subunit epsilon TERM 2234 4156823 - 4156794 - H 78 -9.9 -4.07568 | gap 1, overlap 4156795 TGTCGGCCCGTAAAA CCCGGACGCGGGCG ACC CGC-CGCACCCGGC GACAAGCGCCGAGCT TERM 2235 4156822 - 4156795 - H 75 -13.4 -3.04398 | gap 1, overlap 4156794 GTCGGCCCGTAAAAC CCGGACGCGGGCG ACC CGC-CGCACCCGG CGACAAGCGCCGAGC TERM 2236 4156999 - 4156973 - H 100 -18 -3.53811 | overlap 4156974 4156991 GCGATCGCCCGTAAA CTGCCCGGGTGG TAA CCACCCGGGCAC GCCTGGCCCTAGCCG TERM 2237 4156998 - 4156974 - H 100 -21.5 -2.72144 | overlap 4156973 4156991 CGATCGCCCGTAAAC TGCCCGGGTGG TAA CCACCCGGGCA CGCCTGGCCCTAGCC TERM 2238 4157915 - 4157898 - g 72 -4.7 -4.56597 | overlap 4157875 4157899 CCTGCTGGCCAAAAA CCCGGCC GGCT GGCAGGA AGCGCTGGCGATGGT Rv3712 4156981 - 4158222 + | ligase cobQ2 4158227 - 4158922 + | cobyric acid synthase CobQ2 Rv3714c 4159821 - 4158931 - | hypothetical protein recR 4160500 - 4159889 - | recombination protein RecR Rv3716c 4160913 - 4160512 - | hypothetical protein Rv3717 4161048 - 4161773 + | hypothetical protein Rv3718c 4162258 - 4161815 - | hypothetical protein TERM 2239 4163208 - 4163190 - g 82 -11.6 -4.07568 | opp_overlap 4163192 4163194, overlap 4163191 GTTTGGTGCCCAAAA CCCGCGGC TGC GCCGCTGG TGGCCGCGGCGCTAC Rv3719 4162306 - 4163718 + | hypothetical protein TERM 2240 4164482 - 4164513 + G 74 -7.8 -4.20516 | GCGGCATTCCGACTA CCGCGACGTAGCCG AGAC CGGTTTCGACGCCG TTTCTTCGATCGGGC Rv3720 4163736 - 4164998 + | fatty acid synthase dnaZX 4166731 - 4164995 - | DNA polymerase III subunits gamma and tau Rv3722c 4168128 - 4166821 - | hypothetical protein Rv3723 4168536 - 4169300 + | transmembrane protein cut5a 4169467 - 4169709 + | cutinase precursor cut5b 4169606 - 4170169 + | cutinase Rv3725 4170214 - 4171143 + | oxidoreductase Rv3726 4171421 - 4172614 + | dehydrogenase TERM 2241 4174131 - 4174115 - g 70 -3.6 -4.56775 | overlap 4174117 AGGTTTCTGGAAAAA CGTCCG CCTGC CGGAAG GAACCCGCTACGTTC Rv3727 4172955 - 4174763 + | oxidoreductase TERM 2242 4175523 - 4175578 + G 74 -15.4 -2.64803 | gap 1, opp_overlap 4175529, overlap 4175562 TCGGCGGGCACTGGT GGAGAACCGGGCCGCCGGACGTCGG CGTGTGC CCGACGTGCG-CGGCGCGGTGCTGC TGGCTTTCGCGCTGG TERM 2243 4175572 - 4175529 - g 80 -16 -3.29511 | gap 1, opp_overlap 4175523 4175562 GGCACTGGTGGAGAA CCGGGCCGCCGGACGTCGG CGTGTGC CCGACGTGCG-CGGCGCGG TGCTGCTGGCTTTCG TERM 2244 4177663 - 4177682 + G 77 -5.6 -4.60797 | gap 1, overlap 4177662 CTCGCCGACGTCGTC GGCTGCTCG ATG CG-GCTGCC TTTTCTGTATGCGCC Rv3728 4174873 - 4178070 + | hypothetical protein Rv3729 4178285 - 4180615 + | transferase Rv3730c 4181720 - 4180680 - | hypothetical protein TERM 2245 4181486 - 4181496 + g 76 -8.2 -4.29738 | overlap 4181479 AGTCAGGGCGGTGCC GCGG GAT CCGC TTTTGGTAGATCTGC ligC 4181758 - 4182834 + | ATP-dependent DNA ligase Rv3732 4182934 - 4183992 + | hypothetical protein Rv3733c 4184512 - 4184012 - | hypothetical protein TERM 2246 4184439 - 4184429 - G 72 -8.2 -4.07568 | overlap 4184430 CTTTCCCGCCCAAAA CGGG CCG CCCG GATGCGCCAGAAGGA Rv3734c 4185890 - 4184526 - | hypothetical protein TERM 2247 4185873 - 4185861 - G 75 -3.3 -4.78077 | TTCAATGAAAAGAAA CATCG AGT CGTTG GGCATCATCAGATCC Rv3735 4186089 - 4186577 + | hypothetical protein Rv3736 4186634 - 4187695 + | transcriptional regulatory protein AraC/XylS-family Rv3737 4187699 - 4189288 + | transmembrane protein PPE66 4190232 - 4189285 - | PPE family protein PPE67 4190517 - 4190284 - | PPE family protein Rv3740c 4192179 - 4190833 - | hypothetical protein Rv3741c 4192853 - 4192179 - | oxidoreductase Rv3742c 4193245 - 4192850 - | oxidoreductase TERM 2248 4193018 - 4193039 + g 75 -12.9 -3.44051 | TCGGTGGACCATGAT GGCGTCCGC GCTG GCGGTCGCC TTCTCGTGCTGCCAC ctpJ 4195373 - 4193391 - | cation transporter P-type ATPase CtpJ TERM 2249 4195071 - 4195043 - G 70 -10.9 -3.52073 | overlap 4195044 4195046 4195051 TTGCGAAGATGACAA TGAGCAGAGCGCC CTC GGCGATCTGCCCG ATGGCGGCCGCGCCG Rv3744 4195440 - 4195802 + | transcriptional regulatory protein ArsR-family Rv3745c 4196098 - 4195886 - | hypothetical protein PE34 4196506 - 4196171 - | PE family protein Rv3747 4196724 - 4197107 + | hypothetical protein Rv3748 4197236 - 4197595 + | hypothetical protein Rv3749c 4198137 - 4197628 - | hypothetical protein Rv3750c 4198597 - 4198205 - | excisionase Rv3751 4198874 - 4199089 + | integrase Rv3752c 4199705 - 4199247 - | cytidine/deoxycytidylate deaminase Rv3753c 4200221 - 4199721 - | hypothetical protein TERM 2250 4200465 - 4200504 + G 80 -14.2 -3.74693 | gap 1, opp_overlap 4200465 AGTCTTTGGCTACAA CCGGTCGGTGGAGGGTGCC CAC GGCGCCCGCT-CCGACGGG TTTGATGCCATAACC tyrA 4200421 - 4201326 + | prephenate dehydrogenase Rv3755c 4201888 - 4201289 - | hypothetical protein proZ 4202613 - 4201894 - | osmoprotectant (glycine betaine/carnitine/choline/L-proline) transport integral membrane protein ABC transporter PROZ proW 4203299 - 4202610 - | osmoprotectant (glycine betaine/carnitine/choline/L-proline) transport integral membrane protein ABC transporter PROW proV 4204417 - 4203287 - | osmoprotectant (glycine betaine/carnitine/choline/L-proline) transport ATP-binding protein ABC transporter PROV proX 4205373 - 4204426 - | osmoprotectant (glycine betaine/carnitine/choline/L-proline) binding lipoprotein PROX TERM 2251 4205493 - 4205480 - H 74 -2.4 -4.95155 | GGGATAGGACAAAAA TGGT GTCATG ACCA GCAATCCCTCTTCCT Rv3760 4205538 - 4205840 + | hypothetical protein fadE36 4206917 - 4205862 - | acyl-CoA dehydrogenase Rv3762c 4208876 - 4206996 - | hydrolase TERM 2252 4207375 - 4207344 - G 70 -3.5 -4.57073 | gap 1 CAGCTGGGCGAAAAA CGTG-GGCGCCGGG ACTTG CCCGGAGCTGCCCG GGTTCCCGTCGCGCA TERM 2253 4207997 - 4208037 + g 75 -9.6 -4.09685 | opp_overlap 4207965 4207995 GATCGCGCACCAAGG CGCCGCGCAGGGTCAGCA GGTTG TGCAGGTTATGCGTGGCG TTTTCGGCCATGCAC TERM 2254 4208289 - 4208313 + g 85 -9.9 -4.25104 | GTAGCCCGCACGGCG CATCATCGCCG AGC CGGCGTAGATG TTTTCCTGCACGGCG TERM 2255 4208517 - 4208487 - G 75 -13.2 -3.48276 | GTGGGCGCGATACAA GTCCAGCGCGGCGG CGG CCACCTCGGTGGAC ACCAACGGGTCGATG lpqH 4209047 - 4209526 + | 19 kDa lipoprotein antigen precursor LPQH Rv3764c 4211009 - 4209582 - | two component sensor kinase TERM 2256 4210869 - 4210897 + g 72 -5.2 -4.38712 | gap 1, overlap 4210870 CCGGATGTAGTTGTG CGTCTCGTGCCGC CAGG GCGG-ACGGGGCA TTTTCTCCGGATACA Rv3765c 4211784 - 4211080 - | two component transcriptional regulatory protein TERM 2257 4211139 - 4211152 + g 70 -2.3 -4.57569 | overlap 4211132 4211138 4211137 GAATCATGGGTTCGC GACCG TTGT CGATC TTTTTGCGCAGGTAC Rv3766 4212293 - 4212982 + | hypothetical protein Rv3767c 4213940 - 4212996 - | hypothetical protein TERM 2258 4213684 - 4213674 - G 70 -2.4 -4.57837 | ATACTCGTCGAAAAA CGCG GTC CGGG CGGCCATGAAATCGA Rv3768 4214070 - 4214429 + | hypothetical protein Rv3769 4214615 - 4214887 + | hypothetical protein Rv3770c 4215775 - 4215200 - | hypothetical protein Rv3770A 4216063 - 4215881 - | hypothetical protein Rv3770B 4216269 - 4216078 - | hypothetical protein Rv3771c 4216730 - 4216404 - | hypothetical protein TERM 2259 4216690 - 4216672 - G 70 -10.2 -3.64703 | overlap 4216642 GCCGGGCGAGCCAAA TCCGCGGC GAT GCGGCGGA ACCCGACCTGGCTCA hisC2 4217134 - 4218195 + | putative aminotransferase Rv3773c 4218825 - 4218241 - | hypothetical protein TERM 2260 4219410 - 4219388 - g 93 -9.8 -4.59773 | overlap 4219390 GCTGACCGGCAAAAA TATCGACGCG GCC CGCGCCGAGA AGATCGGCCTGGTCA TERM 2261 4219408 - 4219390 - g 82 -12.4 -3.91506 | overlap 4219388 TGACCGGCAAAAATA TCGACGCG GCC CGCGCCGA GAAGATCGGCCTGGT TERM 2262 4219570 - 4219542 - g 73 -10.9 -3.71848 | opp_overlap 4219541 GTTCTCGACCAACAA CGCACGTCCGCCG TCT CGGAGAACCTGCG CTATGTCGCCGCCTG echA21 4218849 - 4219673 + | enoyl-CoA hydratase TERM 2263 4220046 - 4220010 - g 73 -15.1 -2.87564 | CGACCGTTGTACACA TGCTCGTCGAGCGCGGA CAC TTCGCGCTCGACGACCG CGTCTGCGAGTACCT lipE 4219685 - 4220932 + | lipase LipE TERM 2264 4221262 - 4221225 - g 73 -15.5 -2.52896 | overlap 4221247 CGATCGCCGAACTCA CCAGCCGGCGCACCGGC AATG ACCAGCGGGCCGACTGG GCGTGCGACGGCTGG Rv3776 4221089 - 4222648 + | hypothetical protein Rv3777 4222694 - 4223680 + | oxidoreductase Rv3778c 4224895 - 4223699 - | aminotransferase Rv3779 4224985 - 4226985 + | transmembrane protein alanine and leucine rich Rv3780 4226989 - 4227525 + | hypothetical protein rfbE 4227529 - 4228350 + | o-antigen/lipopolysaccharide transport ATP-binding protein ABC transporter RfbE Rv3782 4228347 - 4229261 + | L-rhamnosyltransferase rfbD 4229258 - 4230100 + | O-antigen/lipopolysaccharide transport integral membrane protein ABC transporter RfbD Rv3784 4230256 - 4231236 + | dTDP-glucose 4,6-dehydratase Rv3785 4231320 - 4232393 + | hypothetical protein Rv3786c 4233597 - 4232374 - | hypothetical protein Rv3787c 4234536 - 4233610 - | hypothetical protein TERM 2265 4234028 - 4233980 - G 91 -12.4 -4.18488 | gap 2, overlap 4233981 AGGTATCCGAACAAA CCCTCGGCGA-TCC-ACGCGGCCG GCT CGGCCGCATCGAAGCCGCCGCGGC GCAGCGCATCGGGCC TERM 2266 4234027 - 4233981 - G 78 -15.9 -3.10611 | gap 2, overlap 4233980 GGTATCCGAACAAAC CCTCGGCGA-TCC-ACGCGGCCG GCT CGGCCGCATCGAAGCCGCCGCGG CGCAGCGCATCGGGC Rv3788 4234780 - 4235265 + | nucleoside diphosphate kinase regulator Rv3789 4235374 - 4235739 + | integral membrane protein Rv3790 4235779 - 4237164 + | oxidoreductase Rv3791 4237165 - 4237929 + | short chain dehydrogenase TERM 2267 4237944 - 4237985 + G 95 -20.3 -2.78384 | opp_overlap 4237944 4237951, overlap 4237951 AGTATGCCGAGCAGA CGCAAAAGCCCCCAATTCG GGCA CGAAATGGGGGCTTTTACG TCTGCTCGCGCCCGG TERM 2268 4237985 - 4237944 - g 100 -22.5 -2.79302 | opp_overlap 4237944 4237951, overlap 4237951 AGTATGCCGAGCAGA CGCAAAAGCCCCCAATTCG GGCA CGAAATGGGGGCTTTTACG TCTGCTCGCGCCCGG TERM 2269 4237978 - 4237951 - g 95 -15.6 -4.24948 | opp_overlap 4237951 4237944, overlap 4237944 CGAGCAGACGCAAAA GCCCCCAATTCG GGCA CGAAATGGGGGC TTTTACGTCTGCTCG TERM 2270 4237951 - 4237978 + G 95 -15.6 -4.24948 | opp_overlap 4237944 4237951, overlap 4237944 CGAGCAGACGCAAAA GCCCCCAATTCG GGCA CGAAATGGGGGC TTTTACGTCTGCTCG TERM 2271 4238211 - 4238232 + G 75 -7.2 -4.3467 | overlap 4238214 GGTCGATTCCGGCGA CTGGCCCG GCTGGG CGGGCTGG TTTTGGTATCCGCGT Rv3792 4237932 - 4239863 + | transmembrane protein embC 4239863 - 4243147 + | integral membrane indolylacetylinositol arabinosyltransferase EmbC (arabinosylindolylacetylinositol synthase) embA 4243233 - 4246517 + | integral membrane indolylacetylinositol arabinosyltransferase EMBA (arabinosylindolylacetylinositol synthase) TERM 2272 4246576 - 4246535 - g 87 -18.9 -2.78596 | opp_overlap 4246535 4246542, overlap 4246542 CAGTGCGCGAGCAGA CGCAAAAGCACCCCAAATC GGGC GATTTTGGGGGCTTTTGCG TCTGCTCGCGGGACG TERM 2273 4246535 - 4246576 + G 87 -18.9 -2.78384 | opp_overlap 4246535 4246542, overlap 4246542 CAGTGCGCGAGCAGA CGCAAAAGCACCCCAAATC GGGC GATTTTGGGGGCTTTTGCG TCTGCTCGCGGGACG TERM 2274 4246569 - 4246542 - g 76 -8.4 -4.24948 | opp_overlap 4246535 4246542, overlap 4246535 CGAGCAGACGCAAAA GCACCCCAAATC GGGC GATTTTGGGGGC TTTTGCGTCTGCTCG TERM 2275 4246542 - 4246569 + G 76 -8.4 -4.24948 | opp_overlap 4246542 4246535, overlap 4246535 CGAGCAGACGCAAAA GCACCCCAAATC GGGC GATTTTGGGGGC TTTTGCGTCTGCTCG TERM 2276 4248129 - 4248139 + G 74 -2.4 -4.72272 | overlap 4248115 ACGGTTCGCTGTCGC GGCG CTT CGGC TTTTTGATCACCGCG TERM 2277 4248310 - 4248349 + G 73 -13.4 -3.26471 | CCACTTCGGGCTGTT CGCCGCCGTAGGGGCGGC GATG GCCGCGCTGACGACGGTG TTGGTATCCCCATCG embB 4246514 - 4249810 + | integral membrane indolylacetylinositol arabinosyltransferase EMBB (arabinosylindolylacetylinositol synthase) Rv3796 4249878 - 4251005 + | hypothetical protein TERM 2278 4251076 - 4251064 - f 78 -6.3 -4.6645 | TAGACATATATAAAA CCTAT GCA ATAGG GTCGCGGCATGCCCG fadE35 4251085 - 4252866 + | acyl-CoA dehydrogenase FADE35 Rv3798 4252993 - 4254327 + | transposase accD4 4255948 - 4254380 - | propionyl-CoA carboxylase beta chain TERM 2279 4254873 - 4254842 - G 72 -4.4 -4.57073 | gap 1, opp_overlap 4254831, overlap 4254843 CACCCCGGGCAAAAA CCCCGGT-GTGTCCA CGA CGAACACCAGCGGGA TGTCGAACGCGTCGC pks13 4261146 - 4255945 - | polyketide synthase PKS13 TERM 2280 4257172 - 4257185 + g 72 -4.5 -4.49311 | GGCCCGCGCGATCTC CTCAG CGGT CTGGG TTTTCTGGTGCTCGT TERM 2281 4257743 - 4257776 + g 85 -18.1 -2.53263 | GTCACCAGCCGGGCG CCGTCGCCGGGCACC GCGC GCTGCTCGGCGGCGG TCAGTTGCGCGTCCG TERM 2282 4261007 - 4261036 + g 70 -10.8 -3.53761 | gap 1 CCCAGCTCCACCATG GGCACC-GATTCG TCGAT CGAGTCCGGTGCC TTTCCGACGGCCTTA fadD32 4263066 - 4261153 - | acyl-CoA synthetase TERM 2283 4262476 - 4262512 + g 75 -15.9 -2.73364 | overlap 4262469 4262481 GCTCGGTATGCGGGT GGAACCCGACGTGTACT GCA AGTACGCGACGGTTTCC TCGTTGGCCTCGGGC TERM 2284 4262481 - 4262507 + g 83 -13 -3.84514 | overlap 4262469 4262476 GTATGCGGGTGGAAC CCGACGTGTACT GCA AGTACGCGACGG TTTCCTCGTTGGCCT Rv3802c 4264365 - 4263355 - | hypothetical protein TERM 2285 4263628 - 4263611 - G 76 -8.3 -4.26903 | overlap 4263612 TCGAGCGCACCAAAA CCGCCCG GCCG CGGGCCG GTCATAGTCAAACCA fbpD 4265462 - 4264563 - | secreted MPT51/MPB51 antigen protein FBPD (MPT51/MPB51 antigen 85 complex C) (AG58C) (Mycolyl transferase 85C) (fibronectin-binding protein C) (85C) TERM 2286 4264602 - 4264629 + g 71 -12.6 -3.30243 | opp_overlap 4264597 GCCCGACATAGCGCC CAGCTGGGGCGC CCAC GAGCCCCAGCCG TTGTCACCGCTGGCT TERM 2287 4264757 - 4264794 + g 70 -6.1 -4.17048 | gap 1, overlap 4264759 4264776 CGGCGGGATCGCTGG CTCCCGGGT-TGGTCGGG CTC CACACCCACACCCGGGTG TTGTTTTGCGCCAGC TERM 2288 4264966 - 4264953 - G 82 -5.9 -4.84359 | overlap 4264955 CGACGGGTACAAAAA GCCCG ACAT CGAGC CAGCGAAGCCGAAGC TERM 2289 4265585 - 4265625 + r 100 -25.6 -3.68962 | opp_overlap 4265585 ACGGGATTTAGGAAA CATCTAGCGGCGGCGACC ACAAG GGTCACCGCCGCTAGATG TTGTGTCTGTTCGGA TERM 2290 4265625 - 4265585 - R 100 -27.8 -3.76402 | opp_overlap 4265585 ACGGGATTTAGGAAA CATCTAGCGGCGGCGACC ACAAG GGTCACCGCCGCTAGATG TTGTGTCTGTTCGGA fbpA 4266658 - 4265642 - | secreted antigen 85-A FBPA (Mycolyl transferase 85A) (fibronectin-binding protein A) (antigen 85 complex A) Rv3805c 4268836 - 4266953 - | transmembrane protein Rv3806c 4269833 - 4268925 - | phosphoribose diphosphate:decaprenyl-phosphate phosphoribosyltransferase TERM 2291 4269323 - 4269309 - G 77 -3.5 -4.78107 | CATGATCAGCAAAAA CCACT TGGAC AGCGG GATTTTGGTGGCCAC Rv3807c 4270337 - 4269840 - | transmembrane protein glfT 4272279 - 4270366 - | bifunctional UDP-galactofuranosyl transferase GLFT glf 4273475 - 4272276 - | UDP-galactopyranose mutase Glf pirG 4273739 - 4274593 + | exported repetitive protein precursor PirG (cell surface protein) (EXP53) TERM 2292 4275098 - 4275065 - g 73 -13.1 -3.31415 | gap 1, overlap 4275060 GAGTATGAAACCGAA CCACGCGATCCGGCGG GCA CCGACGGGTC-CGTGG AACTTGGAGGACTCA Rv3811 4274798 - 4276417 + | hypothetical protein PE_PGRS62 4276571 - 4278085 + | PE-PGRS family protein Rv3813c 4279215 - 4278394 - | hypothetical protein Rv3814c 4280015 - 4279230 - | acyltransferase Rv3815c 4280788 - 4280033 - | acyltransferase Rv3816c 4281571 - 4280792 - | acyltransferase Rv3817 4281647 - 4282402 + | phosphotransferase Rv3818 4282449 - 4283999 + | hypothetical protein Rv3819 4283996 - 4284331 + | hypothetical protein papA2 4285825 - 4284419 - | polyketide synthase associated protein PapA2 TERM 2293 4284696 - 4284714 + g 72 -11.6 -3.54424 | opp_overlap 4284688 ACGAAATTGCCCGGC CGGGGCGG CCT CAGCCCCG TTTCGGGGCGTGCCA Rv3821 4285973 - 4286686 + | integral membrane protein TERM 2294 4287882 - 4287848 - g 72 -7.1 -4.2704 | gap 2, opp_overlap 4287878 GGCAGCAGCAACAAA TGCGCTCCGCGGGGCCA ACG TGGGCCCG-GGCGC-CA ACAAGGCGTTGTCGA Rv3822 4286721 - 4287935 + | hypothetical protein TERM 2295 4288130 - 4288162 + T 73 -8.4 -4.08216 | opp_overlap 4288129 4288149, overlap 4288134 CGAGCGTGAACTGAG GGCGGACCTCGG GCAGACACG CCGAGGTCTTCC TTTTGGGCAGCGTGG mmpL8 4291529 - 4288260 - | integral membrane transport protein TERM 2296 4289125 - 4289135 + g 83 -2.4 -5.17576 | opp_overlap 4289125 TCGGGTGAAATGAAG GCCG CCG CGAC TTTTTTGAGTTGGTC TERM 2297 4290316 - 4290299 - G 71 -9.1 -3.79113 | AGCCGGCCAGAATAA CCAGCAC CAGC GCGCTGG CGAGCAGATGAGTCT TERM 2298 4290393 - 4290372 - G 72 -8.6 -4.09739 | CGAACTCCGCCAAAA GCGCCGGG TGAGGT CACGGCGC GGCGCGATCCAACCG papA1 4293174 - 4291639 - | polyketide synthase associated protein pks2 4299605 - 4293225 - | polyketide synthase PKS2 TERM 2299 4293586 - 4293564 - G 77 -5.4 -4.62302 | overlap 4293565 GAACACTTCGAAAAA CCGGCTGCGC TCT GCGAAGGCGA CCAGCCACGGGGCTC TERM 2300 4301158 - 4301173 + G 75 -3.2 -4.77036 | overlap 4301160 TGGCGACTCGGGCTT CGTGTC TGAG GACAAG TTTTTCATCATCGGC fadD23 4299812 - 4301566 + | acyl-CoA synthetase TERM 2301 4301584 - 4301596 + T 70 -10.5 -3.61517 | GTCACGCGACTTGCA CCCCG TCT CGGGG TTGTTCGGCAGCCAT Rv3827c 4302789 - 4301563 - | transposase Rv3828c 4303397 - 4302786 - | resolvase Rv3829c 4305008 - 4303398 - | dehydrogenase Rv3830c 4305685 - 4305056 - | transcriptional regulatory protein TetR-family Rv3831 4305757 - 4306239 + | hypothetical protein Rv3832c 4306811 - 4306236 - | hypothetical protein TERM 2302 4306413 - 4306386 - G 100 -22.8 -3.62096 | GTGTATTAGGCGAAA CGGCAGCGACGG CACA CCGTCGCTGCCG GCAAAGACGCCACCT Rv3833 4306867 - 4307658 + | AraC family transcriptional regulator serS 4308914 - 4307655 - | seryl-tRNA synthetase Rv3835 4309047 - 4310396 + | hypothetical protein Rv3836 4310401 - 4310814 + | hypothetical protein Rv3837c 4311707 - 4311009 - | phosphoglycerate mutase pheA 4312669 - 4311704 - | prephenate dehydratase Rv3839 4312765 - 4313541 + | hypothetical protein Rv3840 4313567 - 4313980 + | transcriptional regulatory protein bfrB 4314178 - 4314723 + | bacterioferritin BfrB glpQ1 4315562 - 4314738 - | glycerophosphoryl diester phosphodiesterase TERM 2303 4315099 - 4315143 + g 76 -8.3 -4.17048 | opp_overlap 4315076 CGGGATCGATCTGCG GAGGCGGGTGCGGCAATACCG AAC CGGTGTAGCAGCGCCAGCAGC TTGTTTTCCACCAGC Rv3843c 4316596 - 4315568 - | transmembrane protein TERM 2304 4317825 - 4317864 + H 85 -14.9 -3.54424 | opp_overlap 4317810 4317827 TCCCGGCATCGACGA GACGCCCCGGGCTGTCT TGGATC GGCCGGCCCGAGGCGTC TTTGCGCCCGTCAAG Rv3844 4318775 - 4319266 + | transposase Rv3845 4319281 - 4319640 + | hypothetical protein sodA 4320704 - 4321327 + | superoxide dismutase [Fe] SODA Rv3847 4321538 - 4322071 + | hypothetical protein TERM 2305 4322482 - 4322496 + G 79 -7.1 -4.62069 | GTGCACGGGGTAGCG GTGGC GATCG GCCAC TTTTTGGGCTCGACC Rv3848 4322326 - 4323234 + | transmembrane protein Rv3849 4323499 - 4323897 + | hypothetical protein TERM 2306 4324061 - 4324040 - g 70 -11.5 -3.46068 | overlap 4324038 4324041 TCGGCAAGCGAAAGA GCCGCGCGA CCCG TCGCGCGGA AGCCCGCGCGATCAA TERM 2307 4324060 - 4324041 - g 72 -15 -2.6732 | overlap 4324040 4324038 CGGCAAGCGAAAGAG CCGCGCGA CCCG TCGCGCGG AAGCCCGCGCGATCA Rv3850 4324015 - 4324671 + | hypothetical protein Rv3851 4324683 - 4324967 + | hypothetical protein TERM 2308 4325227 - 4325213 - g 95 -7.1 -5.41143 | CACCCGCCAAAAAAA CACCC GCCAA GGGTG CTAAGTCCGCGCCAC hns 4325074 - 4325478 + | histone-like protein HNS menG 4325495 - 4325968 + | ribonuclease activity regulator protein RraA ethA 4327473 - 4326004 - | monooxygenase ETHA ethR 4327549 - 4328199 + | transcriptional regulatory repressor protein (TETR-family) ETHR Rv3856c 4329408 - 4328401 - | hypothetical protein Rv3857c 4329614 - 4329417 - | hypothetical protein gltD 4331505 - 4330039 - | glutamate synthase subunit beta gltB 4336081 - 4331498 - | ferredoxin-dependent glutamate synthase [NADPH] large subunit TERM 2309 4336526 - 4336512 - H 77 -12.8 -3.61398 | opp_overlap 4336511 4336509 4336507 CGCCGGTGGGAACAA CCGCCG GAA CGGCGG GTATCTGTGTTGTTG Rv3860 4336777 - 4337949 + | hypothetical protein whiB6 4338521 - 4338171 - | transcriptional regulatory protein WHIB-like WHIB6 Rv3861 4337946 - 4338272 + | hypothetical protein Rv3863 4338849 - 4340027 + | hypothetical protein TERM 2310 4340870 - 4340850 - g 71 -14.7 -2.62184 | GCCTGCCCGACATCA TCGACGGCC TCT GGCCGCCGA AGTTGCCCGACATTC Rv3864 4340270 - 4341478 + | hypothetical protein TERM 2311 4341668 - 4341648 - g 100 -12.5 -4.34402 | overlap 4341649 TGGGTGATATCAAAA GGGCGACCG ATA CGGTCGCCG GGATTAGCGGACGAG TERM 2312 4341667 - 4341649 - g 78 -16 -3.2032 | overlap 4341648 GGGTGATATCAAAAG GGCGACCG ATA CGGTCGCC GGGATTAGCGGACGA Rv3865 4341566 - 4341877 + | hypothetical protein Rv3866 4341880 - 4342731 + | hypothetical protein Rv3867 4342770 - 4343321 + | hypothetical protein TERM 2313 4343995 - 4343981 - g 70 -8.5 -3.91911 | GCCAGGGCAACGAAA GCGCC GCGGT GGCGC TGCTGGAATGGTTAC Rv3868 4343314 - 4345035 + | hypothetical protein Rv3869 4345039 - 4346481 + | hypothetical protein Rv3870 4346481 - 4348724 + | transmembrane protein Rv3871 4348827 - 4350602 + | hypothetical protein TERM 2314 4351040 - 4351010 - g 77 -13.2 -3.57792 | opp_overlap 4351014 GCACCTATTCGCAAA TCGACGACGGCGCC GCC GGCGTCTTCGCCGA ATAGGCCCCCAACAC PE35 4350745 - 4351044 + | PE family-related protein PPE68 4351075 - 4352181 + | PPE family protein esxB 4352274 - 4352576 + | 10 kDa culture filtrate antigen EsxB esxA 4352609 - 4352896 + | 6 kDa early secretory antigenic target ESXA (ESAT-6) TERM 2315 4352976 - 4352928 - f 81 -13 -3.79071 | opp_overlap 4352928 4352937 4352973 CGTAGAATAGCGAAA CACGGGATCGGGCGAGTTCGAC CTTCC GTCGGTCTCGCCCTTTCTCGTG TTTATACGTTTGAGC TERM 2316 4352928 - 4352976 + F 100 -17.4 -4.02132 | opp_overlap 4352928, overlap 4352937 4352973 CGTAGAATAGCGAAA CACGGGATCGGGCGAGTTCGAC CTTCC GTCGGTCTCGCCCTTTCTCGTG TTTATACGTTTGAGC TERM 2317 4352937 - 4352967 + F 100 -14.7 -4.12037 | opp_overlap 4352928, overlap 4352928 GCGAAACACGGGATC GGGCGAGTTCGAC CTTCC GTCGGTCTCGCCC TTTCTCGTGTTTATA Rv3876 4353010 - 4355010 + | hypothetical protein TERM 2318 4355711 - 4355732 + G 77 -5.7 -4.67904 | opp_overlap 4355706 GGCGCCACAAGTTGC CGGCGCCGC TACG GCCGTGCTG TTTTTGACCTTGATG Rv3877 4355007 - 4356542 + | transmembrane protein TERM 2319 4357305 - 4357281 - g 79 -7.1 -4.58395 | gap 1, overlap 4357296 GCCAGCGCTGAAAAA CCGGCCACCG AGCAAG CGG-AGCCGG TCCACGAAGTGACAA Rv3878 4356693 - 4357535 + | hypothetical protein Rv3879c 4359782 - 4357593 - | hypothetical protein Rv3880c 4360546 - 4360199 - | hypothetical protein Rv3881c 4361925 - 4360543 - | hypothetical protein Rv3882c 4363420 - 4362032 - | hypothetical protein TERM 2320 4362111 - 4362079 - G 72 -12 -3.53012 | gap 1 CCTCGGGTGGGGAAA CCCGGCGA-ATCGGC AGCT GCCGATGCCGCGGGG TACCGATCACATTGT mycP1 4364757 - 4363417 - | membrane-anchored mycosin MYCP1 (serine protease) (subtilisin-like protease) (subtilase-like) (mycosin-1) Rv3884c 4366838 - 4364979 - | CBXX/CFQX family protein TERM 2321 4365151 - 4365165 + g 72 -7 -4.1899 | CGTTCGATCACGTTG CGGGCG AAC CGACCG TTTTGCATAGCGTCG Rv3885c 4368521 - 4366908 - | hypothetical protein mycP2 4370170 - 4368518 - | alanine and proline rich membrane-anchored mycosin Rv3887c 4371684 - 4370155 - | transmembrane protein Rv3888c 4372706 - 4371681 - | hypothetical protein Rv3889c 4373630 - 4372800 - | hypothetical protein TERM 2322 4373706 - 4373664 - R 100 -25 -2.80195 | opp_overlap 4373667, overlap 4373667 AGCTAGCAGCAAGCA GAAGGTGGGGCAGACGCGCG GTC CGCGCATGTACCCCACCTTC ACTCGGCCCACGGCC TERM 2323 4373667 - 4373703 + r 84 -16.5 -3.05384 | opp_overlap 4373664 4373667 TAGCAGCAAGCAGAA GGTGGGGCAGACGCGCG GTC CGCGCATGTACCCCACC TTCACTCGGCCCACG TERM 2324 4373703 - 4373667 - R 100 -20.9 -3.54743 | opp_overlap 4373667, overlap 4373664 TAGCAGCAAGCAGAA GGTGGGGCAGACGCGCG GTC CGCGCATGTACCCCACC TTCACTCGGCCCACG esxC 4374013 - 4373726 - | ESAT-6 like protein ESXC (ESAT-6 like protein 11) esxD 4374372 - 4374049 - | ESAT-6 like protein EsxD PPE69 4375683 - 4374484 - | PPE family protein PE36 4375995 - 4375762 - | PE family protein Rv3894c 4380452 - 4376262 - | hypothetical protein TERM 2325 4378491 - 4378512 + g 87 -6.7 -4.98255 | gap 1, opp_overlap 4378509 ACCCTCCTGACCGAT GTGGA-TGAT CAG ATCAATCCAC TTTTTGTGGTTGGCG Rv3895c 4381940 - 4380453 - | hypothetical protein Rv3896c 4382851 - 4381943 - | hypothetical protein TERM 2326 4382270 - 4382287 + g 77 -5.5 -4.65895 | overlap 4382216 GGCTGGATCGTGAAC GCCTTGG ATAT CCAACGC TTTTTGGATCGCCGC Rv3897c 4383640 - 4383008 - | hypothetical protein Rv3898c 4383985 - 4383653 - | hypothetical protein Rv3899c 4385379 - 4384147 - | hypothetical protein Rv3900c 4386308 - 4385373 - | hypothetical protein TERM 2327 4386036 - 4386048 + g 79 -7.7 -4.53349 | GTCAGCGGCGGTATT GAAGG CGC CCTTC TTTATTTCGTACTTC TERM 2328 4386165 - 4386149 - G 70 -2.3 -4.63932 | GATTCCGCAACAAAA GATCA TGTTGGC TGATC AGATTCCTTGCGAGC Rv3901c 4386814 - 4386365 - | hypothetical protein Rv3902c 4387895 - 4387365 - | hypothetical protein Rv3903c 4390432 - 4387892 - | hypothetical protein TERM 2329 4390144 - 4390100 - G 100 -27.2 -2.88663 | gap 1 ACCCACGCCGACACA GCCGCTCGGCGG-CGGCGCCG GCAA CGGCGCCGCCCGCCCAGCGAC ATCCGACATCGCCTC esxE 4390709 - 4390437 - | hypothetical protein esxF 4391031 - 4390720 - | hypothetical protein TERM 2330 4391149 - 4391102 - R 70 -10.4 -3.57144 | gap 1 CGCCGCAGCCCTAAA GGCTG-CTGGCGCCGTCGGCG GTGCCGT CGCCGTCGGTGTCGGTCAGCC GTACGTCCCAGCGGC Rv3906c 4391606 - 4391097 - | hypothetical protein pcnA 4393073 - 4391631 - | poly(A) polymerase Rv3908 4393449 - 4394195 + | hypothetical protein TERM 2331 4394192 - 4394174 - f 74 -11.6 -3.40522 | ACCGGGTCAGCACAA CGGTCCCG GGC CGGGGCCG TGACCGCACTGCAAC Rv3909 4394192 - 4396600 + | hypothetical protein TERM 2332 4397641 - 4397680 + G 71 -3.4 -4.65895 | gap 1 CTGATCCCAACGGTG GCGTTCATGACGGTCGGCG GTC CGGCGATCGGTA-GCGCGC TTTTTGCATACGGCA Rv3910 4396597 - 4400151 + | transmembrane protein sigM 4400186 - 4400854 + | RNA polymerase sigma factor SigM Rv3912 4400870 - 4401634 + | hypothetical protein trxB2 4401728 - 4402735 + | thioredoxin reductase TRXB2 trxC 4402732 - 4403082 + | thioredoxin trxC (TRX) (MPT46) Rv3915 4403192 - 4404412 + | hydrolase Rv3916c 4405167 - 4404433 - | hypothetical protein parB 4406491 - 4405457 - | chromosome partitioning protein ParB parA 4407531 - 4406488 - | chromosome partitioning protein ParA gidB 4408202 - 4407528 - | glucose-inhibited division protein B Rv3920c 4408897 - 4408334 - | hypothetical protein Rv3921c 4410069 - 4408969 - | putative inner membrane protein translocase component YidC TERM 2333 4409199 - 4409215 + g 73 -3.6 -4.63527 | overlap 4409196 4409194 CGTTGGCCGCCCGGC GCCGGA CCGCC TCCTGC TTTTTGGCCTCCTCC Rv3922c 4410415 - 4410053 - | hypothetical protein rnpA 4410762 - 4410412 - | ribonuclease P rpmH 4410929 - 4410786 - | 50S ribosomal protein L34