TransTermHP v2.07 (built on Jan 21 2009) 25 bins; sample size is 20000000 --pval-conf=/fs/szasmg2/carlk/TTupdate2/expterm.dat --gc=-2.3 --au=-0.9 --gu=1.3 --mm=3.5 --gap=6 --max-len=59 --min-stem=4 --max-loop=13 --min-loop=3 --uwin-length=6 --uwin-require=3 --max-hp-score=-2 --max-tail-score=-2.5 --loop-penalty=1,2,3,4,5,6,7,8,9,10,11 --start-cut=0 --end-cut=25 Genes: 0.584857 %AT, 727980 nt, 4489 terms. Intergenic: 0.612938 %AT, H2T: 107296 nt, 555 terms; T2T: 39894 nt, 455 terms; H2H: 62844 nt, 480 terms. Each terminator entry starts in column 3 and is of the form: term # start - end +/- regionconf hp tail | notes Followed by the sequence of the 5' tail, 5' stem, loop, 3' stem, and 3' tail. Genes are interspersed, and start the first column. SEQUENCE gi|88607955|ref|NC_007798.1| Neorickettsia sennetsu str. Miyayama, complete genome (length 859006) NSE_0001 4 - 774 + | ParB family chromosome partitioning protein TERM 1 2109 - 2097 - g 78 -4.1 -5.20216 | GATAGTAGTAAAAAA CTACC TGG GATAG CTACTCTTGGATTAG NSE_0002 840 - 2213 + | hypothetical protein NSE_0003 3580 - 2237 - | sensor histidine kinase TERM 2 3943 - 3927 - g 76 -2.9 -5.41143 | opp_overlap 3927, overlap 3914 TATTGGCTAAAAAAA CGGCTTC TAG AAAGGCG TTTTTTTTATCAAAA TERM 3 3927 - 3943 + G 90 -2.2 -5.93809 | opp_overlap 3914 3927 TATTGGCTAAAAAAA CGGCTT CTAGA AAGGCG TTTTTTTTATCAAAA TERM 4 4575 - 4556 - g 72 -6.4 -4.25074 | TATCAAATCTGAAAA TCCCAACT CTCA AGATGGGA AAAAAGCTGTAGTTG NSE_0004 3639 - 4886 + | hypothetical protein NSE_0005 5937 - 4930 - | iron-binding protein NSE_0006 6454 - 5975 - | hypothetical protein TERM 5 6568 - 6557 - H 77 -5.8 -4.74917 | opp_overlap 6557 6559 ATGAAATACACAAAA CTGC TTCC GCAG AGGCTGTTTAGCGTG NSE_0007 6618 - 7808 + | HK97 family phage portal protein NSE_0008 8162 - 7908 - | hypothetical protein pgsA 8763 - 8215 - | CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase TERM 6 8639 - 8629 - G 78 -5.4 -5.02074 | GTACCCGTCAAAAAA GTCT GTC AGAC TTGCGATTGAGAAAA nuoJ 8977 - 9546 + | NADH dehydrogenase I, J subunit NSE_0011 9591 - 9686 + | hypothetical protein nuoK 9774 - 10073 + | NADH dehydrogenase I, K subunit NSE_0013 10412 - 10242 - | hypothetical protein TERM 7 11845 - 11870 + GH 75 -8.4 -3.71205 | opp_overlap 11844 TTTCCGGCAAGTTAC GGAAATGCAT GGGTTG GTGCATTTCC TTCCTTTGATTTTTG nuoL 10355 - 12322 + | NADH dehydrogenase I, L subunit NSE_0015 12467 - 13072 + | ankyrin repeat-containing protein tgt 14306 - 13098 - | queuine tRNA-ribosyltransferase NSE_0017 14560 - 14703 + | hypothetical protein TERM 8 14779 - 14767 - T 71 -3.3 -5.09204 | ATACTTTAACAAAAA CCAAC CTC GCCGG CGTTTTTGTAGTAGG NSE_0018 15052 - 14945 - | hypothetical protein dnaK 17074 - 15164 - | chaperone protein DnaK truA 17293 - 18024 + | tRNA pseudouridine synthase A NSE_0021 18111 - 18368 + | hypothetical protein TERM 9 18549 - 18565 + G 71 -8.7 -3.27667 | ATGGTGTGATTCCGG GGTGTTG TTG CAGCACC TTACCTTCATTTGTG NSE_0022 18539 - 18694 + | hypothetical protein TERM 10 19075 - 19041 - g 76 -9.3 -3.53012 | CTTTTTTCCCTGAAA GCACCCCACTGCA CACCGCAAT TGCAGTTGGGCGC ATGGAAGTCCTGGAG NSE_0023 18761 - 21073 + | hypothetical protein NSE_0024 21361 - 21459 + | hypothetical protein TERM 11 21681 - 21694 + T 77 -6.7 -4.66537 | AACAGTTACATGTAG GGGTT TCCT AACCC TTTTCTCTTGCAGAG NSE_0025 22308 - 21688 - | hypothetical protein NSE_0026 22481 - 22386 - | hypothetical protein NSE_0027 23332 - 22538 - | hypothetical protein TERM 12 22902 - 22930 + g 75 -8.9 -3.73224 | overlap 22903 GGATCCGAATCGTTT CCCTTAGGAGCAA TTT TTGCTCCTAACGA TTTCATCAAACCTGA TERM 13 22903 - 22929 + g 89 -12.4 -2.8372 | overlap 22902 GATCCGAATCGTTTC CCTTAGGAGCAA TTT TTGCTCCTAACG ATTTCATCAAACCTG TERM 14 23617 - 23635 + H 79 -8.8 -4.1466 | overlap 23609 CGTTGCCGCGAACGC GGTGCGCT CTT ACCGCACC TTTTCACCCTTACCT NSE_0028 23916 - 24077 + | hypothetical protein NSE_0029 24783 - 24139 - | hypothetical protein NSE_0030 24934 - 24806 - | hypothetical protein purM 26112 - 25144 - | phosphoribosylformylglycinamidine cyclo-ligase TERM 15 25587 - 25603 + g 74 -6.6 -4.37658 | opp_overlap 25587 TCAGCCCAATAAGGA TGTCAC CTTTC GTGACA TTTTGTGGGAGAATT TERM 16 26007 - 26035 + g 71 -4.5 -4.7373 | opp_overlap 26010, overlap 26010 ACCCACCAATAGCGG AAACGCAGTGCTT ATC AACCTCTGCGTTC TTTTTAATAAAATCA TERM 17 26010 - 26032 + g 74 -6.2 -4.47707 | opp_overlap 26010, overlap 26007 CACCAATAGCGGAAA CGCAGTGCTT ATC AACCTCTGCG TTCTTTTTAATAAAA mrpC 26649 - 26323 - | Na(+)/H(+) antiporter subunit C NSE_0033 26665 - 26796 + | hypothetical protein NSE_0035 28134 - 27859 - | monovalent cation/proton antiporter, MnhG/PhaG subunit NSE_0036 29021 - 28338 - | hypothetical protein NSE_0037 29208 - 29092 - | hypothetical protein NSE_0038 29541 - 29843 + | hypothetical protein rpoZ 29895 - 30281 + | DNA-directed RNA polymerase, omega subunit TERM 18 30348 - 30362 + G 71 -8.6 -3.54543 | CCCCACCCTTCAGTC GTTACC TTT GGTAAC TTTGACGGGGTACAT TERM 19 31042 - 31024 - g 77 -11 -2.79272 | overlap 31023 31021 ATATTGGTAAAAGAC CCACTACC TCT GGCAGTGG TGAAGTTATCTTAGA TERM 20 31119 - 31140 + G 81 -7.4 -4.74453 | opp_overlap 31119 31118 31134 ACAGTGTATCTAAAG GCTTTTCT ACGAGA AGAAAAGC TTTTTCCGTCTGTTG ribF 30303 - 31214 + | riboflavin biosynthesis protein RibF NSE_0041 31400 - 32296 + | hypothetical protein NSE_0042 34034 - 32301 - | type I secretion system ATPase fabI 34305 - 35102 + | enoyl-(acyl-carrier-protein) reductase thiS 35378 - 35160 - | thiamine biosynthesis protein ThiS NSE_0045 35962 - 35405 - | hexapeptide transferase family protein TERM 21 35548 - 35560 + g 76 -7.7 -4.16842 | CCAGCCATAGTTCAC CGGAT TTT ATCCG TTTGTTAGACGTCAC TERM 22 37731 - 37750 + H 80 -11.4 -2.56288 | opp_overlap 37731 37728, overlap 37727 37734 37737 AGTCGTAACAAGGTA GCCGTAGG TGAA CCTGCGGC TGGATTACCTCCTTT TERM 23 37750 - 37731 - H 71 -9.2 -2.65808 | opp_overlap 37727 37731 37734 37737, overlap 37728 AGTCGTAACAAGGTA GCCGTAGG TGAA CCTGCGGC TGGATTACCTCCTTT TERM 24 37734 - 37762 + H 71 -3.7 -4.86731 | opp_overlap 37731 37728, overlap 37731 37727 37737 CGTAACAAGGTAGCC GTAGGTGAACCTG CGG CTGGATTACCTCC TTTTATTTAGGCGAA sdhC 37788 - 38210 + | succinate dehydrogenase, cytochrome b556 subunit TERM 25 38247 - 38260 + G 84 -3.8 -5.42164 | TAGCTCAACGCATTA CAGC TCTTTT GCTG TTTTTGTTATTTATC NSE_0048 38207 - 38536 + | putative succinate dehydrogenase, hydrophobic membrane anchor protein argS 38541 - 40253 + | arginyl-tRNA synthetase NSE_0050 41126 - 40371 - | putative membrane proetin TERM 26 40751 - 40731 - G 82 -3.1 -5.4505 | overlap 40735 CGCTGCAATAAAAAA GACCCTCGC TAT GCTAGCGCC AGTATAAGCAATGAA TERM 27 41233 - 41210 - R 71 -9.6 -2.6381 | overlap 41213 ATAATTTTCAGATTA TAAGGCCCCT TTCC AGAGGCCCTA ATCACATTCAAACTA TERM 28 41230 - 41213 - R 74 -9.1 -3.4678 | overlap 41210 ATTTTCAGATTATAA GGCCCCT TTCC AGAGGCC CTAATCACATTCAAA NSE_0051 43679 - 41241 - | hypothetical protein TERM 29 41475 - 41498 + g 77 -10.4 -3.12521 | overlap 41474 41471 41470 41478 CAGGTGATGTACGCG GAAGCCTTTT TCAG AAAGGGCTTC TCTGATTTTACTAAG NSE_0052 43984 - 44202 + | hypothetical protein TERM 30 45248 - 45260 + G 71 -3.3 -4.94992 | GGGCGAGTTATATGG TCTCG GAG CGCGA TTTTTATACCTTTAA nuoG 44209 - 46248 + | NADH dehydrogenase subunit G nuoH 46226 - 47236 + | NADH dehydrogenase I, H subunit NSE_0055 47265 - 47924 + | putative osmotically inducible protein TERM 31 47927 - 47937 + T 78 -5.4 -5.08824 | GCACAAACACTAAGG GGAT GCT ATCC TTTTTTAGGTCCAGG fumC 49421 - 48009 - | fumarate hydratase TERM 32 48612 - 48633 + g 74 -6.6 -4.40963 | CTCAACTAATGTGTC GTGTGAGG CAAGCA TCTCACAC TTGTTTTTCGCAGGT pnp 51999 - 49726 - | polynucleotide phosphorylase/polyadenylase TERM 33 51927 - 51903 - G 75 -8.6 -3.74693 | gap 1 TTCCACCGTATGAAA CG-CAAGCTGC ACCA GCAGCCTGACG TGCTACCTCTCCGGT rpsO 52263 - 52003 - | ribosomal protein S15 purB 53772 - 52474 - | adenylosuccinate lyase rplI 54266 - 53784 - | ribosomal protein L9 rpsR 54500 - 54279 - | ribosomal protein S18 rpsF 54889 - 54545 - | ribosomal protein S6 NSE_0063 55094 - 56110 + | putative phosphate ABC transporter, periplasmic phosphate-binding protein TERM 34 56201 - 56215 + G 93 -2.8 -6.06723 | overlap 56203 TTTATGTTCCTGCGC TGCCAA GTA TTGGTG TTTTTTTTTCGGCAA TERM 35 56203 - 56213 + G 73 -5.4 -4.69028 | overlap 56201 TATGTTCCTGCGCTG CCAA GTA TTGG TGTTTTTTTTTCGGC NSE_0064 56119 - 57312 + | Bcr/CflA subfamily drug resistance transporter NSE_0065 58232 - 57339 - | hypothetical protein TERM 36 58497 - 58510 + H 76 -3.9 -5.27938 | opp_overlap 58497 TATTGTGCCTCATAA TTCTT ACTT AAGAA TTTTTATTTACAGCT NSE_0066 58542 - 59210 + | putative lipoprotein rho 60632 - 59313 - | transcription termination factor Rho TERM 37 59468 - 59480 + g 71 -4.1 -4.79352 | GGATAGAGCGTTCTA GAAGG AGT TCTTC TTTTCTTGTGCCTGA TERM 38 62480 - 62457 - g 79 -7.6 -4.37211 | gap 1 GAAAGGTACAATAAA GTGA-AGTTCA GTT TGAACTGTCAC ATGGACAATCACGCG NSE_0068 61185 - 62690 + | Mg chelatase-related protein NSE_0069 62874 - 63071 + | hypothetical protein NSE_0070 63096 - 63563 + | hypothetical protein NSE_0071 63633 - 63851 + | hypothetical protein NSE_0072 64070 - 64426 + | hypothetical protein NSE_0073 64865 - 65707 + | hypothetical protein NSE_0074 66039 - 65872 - | hypothetical protein NSE_0075 66207 - 66332 + | hypothetical protein NSE_0076 66473 - 66592 + | hypothetical protein NSE_0077 67058 - 67300 + | hypothetical protein TERM 39 67313 - 67284 - T 81 -9.4 -3.95986 | opp_overlap 67287 CTCAACTCAACGAAA CCACTACGGA AGGATAAATA TCCGTAGTGG TTAAGAAAAAATACG NSE_0078 68098 - 67388 - | hypothetical protein TERM 40 67864 - 67849 - G 70 -2.5 -4.92385 | overlap 67851 GAGATGCAAACAAAA GCGTG GCCAAG CACAC AAGCAGAGCAGCTGC NSE_0079 68680 - 68525 - | hypothetical protein NSE_0080 69407 - 68745 - | hypothetical protein TERM 41 68986 - 68975 - GH 73 -3.6 -5.07486 | TAGCTCCAAGAAAAA CGCC TACT AGCG TGAGCGCAACACAAA TERM 42 69411 - 69400 - Gg 75 -2.2 -5.40625 | ACAGTAGATAAAAAA CGTC CCAT AACG ATAAATAAAACACCA TERM 43 69435 - 69422 - gR 86 -6.7 -5.04733 | TAACGATAAATAAAA CACCA TGCG TGGTG AAGAAGCTAAGAACA NSE_0081 69139 - 69459 + | hypothetical protein NSE_0082 70040 - 69894 - | hypothetical protein NSE_0083 71089 - 70325 - | hypothetical protein TERM 44 70413 - 70399 - G 84 -10 -3.79113 | opp_overlap 70411 ATTGCTCTACAATAA CACTGC TCC GCAGTG AATGCTCATTTACTT TERM 45 71474 - 71496 + H 73 -2.7 -5.2696 | TCTAATGAGGAAGTG TGAATCACC TCAGT GGTTGTTCA TTTTTTGCCTTTTGA TERM 46 71900 - 71911 + H 85 -5.8 -5.3658 | GTATCTGCTGTTATC GGAG AGTT CTCC TTTTCTTTTTGTAAT TERM 47 72759 - 72747 - g 86 -9.1 -4.28361 | TCAACTCGACTAAAA GCCTG GCT CAGGC GATAGAACATGAAGC gatB 72068 - 73534 + | aspartyl/glutamyl-tRNA amidotransferase subunit B NSE_0085 73527 - 73961 + | cytidine/deoxycytidylate deaminase family protein TERM 48 74163 - 74174 + T 84 -4.4 -5.59534 | GCGCATAATTTACTT GGAT ATTT ATCC TTTTTTCTTGTCCTT NSE_0086 74660 - 74394 - | hypothetical protein NSE_0087 74886 - 75071 + | hypothetical protein NSE_0088 75251 - 75754 + | hypothetical protein NSE_0089 75827 - 75967 + | hypothetical protein NSE_0090 76215 - 76706 + | hypothetical protein NSE_0091 76795 - 76935 + | hypothetical protein NSE_0092 77129 - 77680 + | hypothetical protein NSE_0093 77828 - 77709 - | hypothetical protein fmt 78936 - 78013 - | methionyl-tRNA formyltransferase TERM 49 78057 - 78042 - G 77 -4.7 -4.93318 | opp_overlap 78047 TATAATCTATAAAAA CATGC GAGTCA GCATG GGTCCCATATTTACT TERM 50 78121 - 78131 + g 71 -3.2 -4.98255 | TTCCCTTTTATTCTC TGGT TTC ACCG TTTTTATGGTTGCAC NSE_0096 79128 - 79232 + | hypothetical protein nadE 80091 - 79285 - | NAD+ synthetase NSE_0098 80101 - 80190 + | hypothetical protein NSE_0099 80379 - 80170 - | hypothetical protein lipB 80625 - 81254 + | lipoate-protein ligase B truB 81266 - 81973 + | tRNA pseudouridine synthase B NSE_0102 82049 - 82222 + | hypothetical protein NSE_0103 82339 - 82587 + | hypothetical protein TERM 51 82682 - 82696 + G 74 -6.4 -4.52873 | CATGTGTAATTGTTG TCCTTG CAA CAGGGA TTGTTTTTATGAGAA NSE_0104 82597 - 83676 + | hypothetical protein NSE_0105 83760 - 83951 + | hypothetical protein NSE_0106 84145 - 83999 - | hypothetical protein NSE_0107 84763 - 85689 + | hypothetical protein TERM 52 86770 - 86751 - g 75 -2.2 -5.27335 | gap 1 TCTTTTAAAGAAAAA GAAGCGAGT ATT ACT-ACTTC AATACCTGGTTTAAA NSE_0108 86211 - 87413 + | hypothetical protein TERM 53 87611 - 87580 - g 100 -10.2 -4.31766 | opp_overlap 87578 87586 AGGACATAAGACAAA CTTAGACGTGTGTA GGTT TTCACACGTCTTAG CATCGTTTGTTGTAA NSE_0109 87560 - 87709 + | hypothetical protein TERM 54 87710 - 87746 + F 74 -5.2 -4.86033 | TGTAAGAGAAAGTGA TCTGAGGTTTTTCTAT CCTTA AAAGAAGTGCCTCAGA TTTTTATAAAACTTT NSE_0110 87850 - 88089 + | hypothetical protein NSE_0111 88421 - 89233 + | hypothetical protein NSE_0112 89497 - 90399 + | hypothetical protein TERM 55 91149 - 91175 + G 95 -13.1 -3.16564 | gap 1 CTGGGGATTTGCATA CTCCTGCTCAGC CTGG GC-GAGCAGGAG TTGCTAAAGTAAAAG NSE_0113 90713 - 91501 + | hypothetical protein TERM 56 91971 - 91959 - Tf 72 -5.5 -4.67651 | ATAGTTGAAAATAAA CACGT TGA ACGCG GTGAATCCGGTCAGA NSE_0114 92297 - 92049 - | hypothetical protein NSE_0115 92233 - 92964 + | hypothetical protein TERM 57 92994 - 93004 + Tr 76 -2.6 -5.45056 | ATTATTTTCTGTTTT TTAT AGA ATAA TTTATTTTTTTTTCA NSE_0116 93249 - 93109 - | hypothetical protein NSE_0117 93292 - 94203 + | hypothetical protein NSE_0118 94290 - 94442 + | hypothetical protein clpB 97231 - 94667 - | ClpB protein TERM 58 95235 - 95251 + g 71 -9.5 -3.06737 | overlap 95230 TGATATGGACGCCGT CTTACTG CTT CAGTAAG TATTCCACCTTCCTC TERM 59 95301 - 95314 + g 71 -4.5 -4.74453 | opp_overlap 95301 GGTGCACCTATCAAT CGTGC TACG GCATG TTTTTCCATATATTC TERM 60 98545 - 98527 - g 77 -3.8 -5.0917 | GGATGAAAAAAGAAA GCAATATC GAG GAGACTGC TTATAAGGTGAATAT NSE_0120 97557 - 99206 + | ribonuclease NSE_0121 100451 - 99201 - | hypothetical protein nadC 100662 - 101522 + | nicotinate-nucleotide pyrophosphorylase TERM 61 101602 - 101616 + F 74 -10 -2.69951 | overlap 101601 AAATCATGAAATTCT GGAGCT GGA AGCTCC CTCTTTGATAATTGA rpsP 101663 - 101920 + | ribosomal protein S16 NSE_0124 101917 - 102408 + | putative 16S rRNA processing protein RimM TERM 62 102422 - 102440 + G 71 -2.4 -5.19251 | AGTTGCTATGTTACT GTTTCTTG GAG TAAGCAAC TTTTTATTAGTATTG TERM 63 103195 - 103181 - g 77 -3.6 -5.10497 | AAGCCACGTAAAAAA TCTTTC AGG AAAAGA ATATCACTCCGCTCA TERM 64 103362 - 103344 - g 81 -11.8 -2.54896 | opp_overlap 103342 103340 103338, overlap 103340 GTCTCACCGAACTCA CTTGTAGC GAT GCTACAAG CTGTGTCTTCCGTGT NSE_0125 102414 - 103640 + | RmuC domain-containing protein NSE_0126 104450 - 103662 - | hypothetical protein TERM 65 104732 - 104750 + G 87 -4.6 -5.52023 | TGAATTAAGGTACAG GATGATAG TAT CTATAATC TTTTTTCTTACTACT TERM 66 105370 - 105392 + G 77 -4.9 -4.98522 | opp_overlap 105372 105375 ACGTGCTTAGTCAGA TAGGATTGG CAATC CCAATGCTA TTTTTATATGAGCTT tatC 104694 - 105485 + | Sec-independent protein translocase TatC NSE_0128 105557 - 106426 + | HemK family modification methylase NSE_0129 106580 - 106714 + | hypothetical protein TERM 67 106726 - 106747 + F 89 -6.6 -5.40464 | gap 1, opp_overlap 106728, overlap 106729 GTAGTGTTTGTTTAA GAGGGGCCT TTTAT AGGCCC-TC TTTTTATTTGTGGTA TERM 68 106729 - 106745 + F 85 -9.4 -4.31946 | opp_overlap 106728, overlap 106726 GTGTTTGTTTAAGAG GGGCCT TTTAT AGGCCC TCTTTTTATTTGTGG NSE_0130 106757 - 107053 + | hypothetical protein TERM 69 107332 - 107342 + T 78 -5.4 -5.02476 | ATATGCTACTGTTCT TGAG GTT CTCA TTTTTTGCAGAATGT atpA 109505 - 107976 - | ATP synthase F1, alpha subunit TERM 70 109441 - 109453 + g 87 -4.9 -5.46129 | GAAAAAATCTGCTGA TCAAA ATC TTTGA TTTTTTCCTTTATTA atpH 110040 - 109516 - | ATP synthase F1, delta subunit NSE_0133 110704 - 110123 - | 5,10-methenyltetrahydrofolate synthetase TERM 71 110632 - 110652 + g 84 -3.9 -5.4593 | CTATGAGCCTGTCGA GCAACGC TTTGTTT GCGATGC TTTTTCTTATTTTGC ispF 111257 - 110751 - | 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase NSE_0135 111384 - 111277 - | hypothetical protein TERM 72 111315 - 111326 + g 71 -3 -4.9645 | opp_overlap 111315, overlap 111310 CGAATCTTAGAAAAA GAAA ATGT TTTC TTTTGTTCTTATCCT TERM 73 112479 - 112468 - g 71 -4.4 -4.91109 | opp_overlap 112468 GGTGGACGAGAAAAA GCAA TCTG TTGC TATTTTGCGTACCAT NSE_0137 111587 - 112810 + | putative permease NSE_0138 113199 - 112840 - | putative RNA pseudouridylate synthase, truncation NSE_0139 113279 - 113458 + | hypothetical protein TERM 74 113911 - 113933 + G 100 -16.4 -3.17075 | opp_overlap 113917, overlap 113917 TTTCTTGTGCTATAC GGCAAATGGG ATT CCCATTTGCC TTGGATTGCAAGGAG NSE_0140 113711 - 114274 + | hypothetical protein NSE_0141 114344 - 114436 + | hypothetical protein NSE_0142 115502 - 114546 - | fructose-bisphosphate aldolase NSE_0143 115592 - 115747 + | hypothetical protein xerD 115865 - 116782 + | tyrosine recombinase XerD NSE_0145 116994 - 118001 + | hypothetical protein TERM 75 118113 - 118154 + G 70 -7.3 -3.8615 | overlap 118108 118115 ATGCATCGTAGCTGA GTGTGATGCAGGAAATCGT TTGG ATGTTTTCCTGCATCGCTG TTTACCCTTTTTTTC TERM 76 118115 - 118152 + G 100 -14.3 -3.48617 | overlap 118113 118108 GCATCGTAGCTGAGT GTGATGCAGGAAATCGT TTGG ATGTTTTCCTGCATCGC TGTTTACCCTTTTTT NSE_0146 118090 - 119082 + | ribosomal large subunit pseudouridine synthase A NSE_0147 119358 - 119576 + | hypothetical protein NSE_0148 119593 - 119769 + | hypothetical protein NSE_0149 120440 - 120306 - | hypothetical protein NSE_0151 120679 - 121725 + | RND family efflux transporter MFP subunit NSE_0152 121676 - 121906 + | hypothetical protein TERM 77 122071 - 122088 + GF 82 -8.5 -4.24963 | opp_overlap 122070 CCGGTTCGATTATAT GGATGAT TATA ATCATCC TTTTCACTGCTTCTA TERM 78 122909 - 122921 + GF 70 -6.9 -3.74077 | GACATGGTCTTTTTG CGCGC AGT GTGCG TTTGAATATCTCACA NSE_0153 121791 - 123128 + | sodium:alanine symporter family protein pyrC 123195 - 124511 + | dihydroorotase, multifunctional complex type NSE_0155 124558 - 124707 + | hypothetical protein alaS 127268 - 124722 - | alanyl-tRNA synthetase TERM 79 126890 - 126902 + g 91 -6.3 -5.5604 | CGTCCTCGTGGTAGA CTGTA ATG TACAG TTTTTTCTTACTTAA NSE_0157 127530 - 127381 - | hypothetical protein NSE_0159 129254 - 129072 - | hypothetical protein NSE_0158 127556 - 129157 + | putative transporter TERM 80 129145 - 129164 + gT 82 -10.8 -3.28146 | overlap 129139 TTTCTTTCATTGTGT CTCTCATC AGTA GATGAGAG TTCATGATAGTTTTT NSE_0161 130067 - 129456 - | CcmB-related protein TERM 81 129789 - 129778 - G 78 -5.8 -4.89519 | opp_overlap 129774 AGAAGATAAAACAAA CCTG TAGC CAGG AGTGTTAATAAAAGA TERM 82 130134 - 130144 + H 100 -4.6 -6.55664 | TGATGTTAGAGTTCT GCCG GTG TGGC TTTTTTTTTCTTTTA dksA 130140 - 130553 + | DnaK suppressor protein TERM 83 130669 - 130650 - g 71 -5 -4.68705 | AGAATCTCAACAAAA CTAAGAGA GTTG TCTCTGAG AGTCTAGAGGAGAAG TERM 84 130685 - 130703 + G 70 -3.8 -4.77438 | opp_overlap 130685 AGTCTAGAGGAGAAG CTTGGCGA GTC TTACCAAG TTTTTAATAGTGGGT thyX 130622 - 131500 + | FAD-dependent thymidylate synthase hflK 131617 - 132660 + | HflK protein hflC 132657 - 133517 + | HflC protein TERM 85 134866 - 134850 - g 81 -4.3 -5.38326 | CGAAGCAAAGAAAAA GGGGCAA AGG TCGCTCC TAATGCTGATAAATC NSE_0166 133504 - 134925 + | periplasmic serine protease TERM 86 135054 - 135087 + G 71 -8.9 -3.30969 | gap 1, overlap 135049 GGTATGCCAGCTGTG GCGCTCACTGATATTG ATA CAATGGCAG-GGGCGC TTGAGTTTGCTGAGT TERM 87 135482 - 135492 + G 73 -5.4 -4.59773 | TCCTTTTGTTGCTAC GAAC GAT GTTC TTTTTCCAGATACGG dnaE 134937 - 138170 + | DNA polymerase III, alpha subunit NSE_0169 139495 - 138386 - | Smr domain-containing protein TERM 88 138745 - 138757 + g 74 -6.3 -4.4458 | CAAGATTATTTGTGT TCAAG CTA CTTGA TTTATTGTATATCTC dnaN 139761 - 140879 + | DNA polymerase III, beta subunit NSE_0172 142610 - 141195 - | isocitrate dehydrogenase TERM 89 141470 - 141454 - G 76 -9.4 -3.53811 | opp_overlap 141454 141450 TTTATTTTTTCTAAA GCAGCC AAAAG GGCTGC TAAATTTGTACTATC TERM 90 142105 - 142121 + g 82 -2.2 -5.63504 | overlap 142106 TTCATGATATTATCT TTCACC ATTAC GGTGAC TTTTTTTCTGCCGTT NSE_0173 142696 - 143610 + | putative transporter NSE_0174 143965 - 143828 - | hypothetical protein NSE_0175 143960 - 145231 + | M16 family peptidase TERM 91 145393 - 145369 - g 73 -8.6 -3.62275 | overlap 145389 AGTGACTATGGGAAA TGCAGTCGTT GTAAA ATCGACTGCA CAGAAAGTGAAGCGT hslV 145277 - 145843 + | ATP-dependent protease peptidase subunit TERM 92 146023 - 146012 - g 93 -4.4 -5.7946 | overlap 146014 TGGCCAAGAAAAAAA TTGC GATT GCAA TAAGAAACCGCTGGA hslU 145864 - 147282 + | ATP-dependent protease ATP-binding subunit NSE_0178 147285 - 147983 + | putative 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase pyrD 148110 - 149156 + | dihydroorotate dehydrogenase NSE_0180 150681 - 149374 - | putative 3-phosphoshikimate 1-carboxyvinyltransferase NSE_0181 153774 - 150943 - | hypothetical protein NSE_0182 153916 - 153764 - | hypothetical protein NSE_0183 154260 - 153913 - | hypothetical protein NSE_0184 154343 - 154555 + | hypothetical protein purH 156266 - 154794 - | phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase gshB 157459 - 156485 - | glutathione synthetase TERM 93 157506 - 157517 + H 70 -3 -5.08824 | TATGATAGTGAGATT TTAC ACAT GTAA TTTTTTAACTCGACA NSE_0187 157785 - 157961 + | hypothetical protein NSE_0188 157995 - 158174 + | hypothetical protein TERM 94 159026 - 159040 + G 74 -5 -4.76075 | opp_overlap 159026, overlap 159028 159037 GTCCTATTGCACAAG TTCAGT CCC ACTGGA TTTTATTCATCTGCT NSE_0189 158171 - 159568 + | hypothetical protein NSE_0190 160416 - 159745 - | hypothetical protein TERM 95 160371 - 160355 - G 70 -3.7 -4.86731 | opp_overlap 160370, overlap 160358 CTCTCTGAAACAAAA TAGTCTG CAG CAGAGTA GGTATTCTGCCTAAT NSE_0191 161377 - 160394 - | PerM family permease NSE_0192 164568 - 161491 - | AcrB/AcrD/AcrF family transporter NSE_0193 164830 - 164597 - | hypothetical protein TERM 96 164728 - 164718 - G 79 -6.8 -4.68724 | GCACCTAATACAAAA CTGC AGA GCAG TGCCACATTTATGGA TERM 97 164812 - 164835 + g 70 -7.4 -3.90318 | CACCGTATAGGTCAC GTACTTTGGG AAGT CCCAAGGCAC TTTATCGGATAATCA purF 166199 - 164808 - | amidophosphoribosyltransferase TERM 98 166005 - 165989 - G 72 -7.3 -4.05747 | CAGAGGGGATAGAAA GGTCAAC TGG ATTGACC GACATAATCCTGCCA NSE_0195 166632 - 166240 - | hypothetical protein TERM 99 166397 - 166416 + g 74 -10 -3.15354 | opp_overlap 166396, overlap 166389 166395 166415 GTCGTTTCAGAGGAT CCAACCGG TTCC TCGGTTGG TGTTAAGTTAACATC efp 167204 - 166629 - | translation elongation factor P NSE_0197 167705 - 167307 - | putative lipoprotein NSE_0198 167974 - 169122 + | putative transporter TERM 100 169731 - 169741 + G 70 -5.4 -4.48987 | overlap 169735 CTGATGAGTAATTTC CCTT CTA AAGG TTTTGGTTCTCCAGA NSE_0199 169119 - 170168 + | putative DNA replication and repair protein RecF NSE_0200 170382 - 170612 + | hypothetical protein TERM 101 170725 - 170735 + G 71 -4.6 -4.63928 | CACCATGGGAAAAGT GCGT GAA GCGC TTTTTAACATCATCT NSE_0201 170642 - 171238 + | putative methyltransferase NSE_0202 171372 - 171632 + | BolA family protein NSE_0203 171654 - 171974 + | glutaredoxin-related protein pstC 173033 - 172059 - | phosphate ABC transporter, permease protein PstC TERM 102 172843 - 172822 - G 82 -5.9 -5.04249 | gap 1 GTCCCAAAAAAGAAA TCCGT-TGGC GAA ACCACACGGA AGAACGAAACCGTCT TERM 103 173374 - 173388 + G 73 -2.8 -5.24531 | overlap 173376 TTCCTGCACTGGCTG TGCCAA GAA TTGGGA TTTTTTCTACGGACT TERM 104 173607 - 173589 - g 74 -9.6 -3.25111 | opp_overlap 173580 173588 173591, overlap 173580 173583 173587 GCAAAAGGAGTAAGA CACCTGAT CTT ACCAGGTG ATGTATACAATGTGC NSE_0205 173274 - 174215 + | hypothetical protein TERM 105 174908 - 174897 - g 78 -2.2 -5.48825 | GAGGAGCTAAAAAAA CTCA AGTT CGAG CTTTCAGATGAGCAA priA 174366 - 176495 + | primosomal protein N' TERM 106 176628 - 176639 + G 81 -4.4 -5.30686 | ACTTGCCCTAACATT TCCT TTTT AGGA TTTTTTGTGCGTGTT NSE_0207 176511 - 176684 + | hypothetical protein TERM 107 176992 - 177002 + G 71 -4 -4.87786 | CGTATTCACAGTTGG TAGT TTG ACTA TTTTTGTAGCGTTGC NSE_0208 176762 - 177796 + | hypothetical protein NSE_0209 178398 - 177802 - | exopolysaccharide synthesis protein virB9-1 179218 - 178418 - | type IV secretion system protein VirB9 virB8-1 179849 - 179202 - | type IV secretion system protein VirB8 TERM 108 180024 - 180034 + G 71 -3.2 -4.99043 | ATTCAAGAAAAGCTT CTGA AAG TCGG TTTTGTTTCTGAAGA grpE 179931 - 180494 + | co-chaperone GrpE TERM 109 181318 - 181304 - g 74 -4.2 -5.03314 | CTTAGTGGTAAAAAA GTAGAG CAA CTCTGC AACGAGGTGAGTAAT trpS 180524 - 181516 + | tryptophanyl-tRNA synthetase NSE_0214 181579 - 181785 + | ribosomal protein L35 rplT 181799 - 182152 + | 50S ribosomal protein L20 TERM 110 182153 - 182135 - f 70 -5.2 -4.59293 | opp_overlap 182135 GAAATAGTAAACAAA GCCAAAGC TGC GCTGTGAC TGTTAATTATGAGAA TERM 111 182425 - 182407 - g 73 -3.9 -5.00138 | gap 1, opp_overlap 182410, overlap 182408 182409 182411 GAGTCAAATGAAAAA CTTACTGC TGAG GCAGTA-G ATGTGTCCTATCCTG TERM 112 182691 - 182703 + G 77 -4.7 -5.06052 | opp_overlap 182688 TCGAGCAATGGAGGA GCGCG AGC CGCCC TTTTATATTTTTTCG pheS 182149 - 183126 + | phenylalanyl-tRNA synthetase, alpha subunit rpiB 183158 - 183616 + | ribose 5-phosphate isomerase B TERM 113 184401 - 184423 + GT 72 -6.3 -4.26344 | overlap 184422 GGTCCTCAGATGCAT GCAATAGCT GCTAG GGCTGTTGC TTTTGGTGAAGCTCT glyA 183588 - 184847 + | serine hydroxymethyltransferase NSE_0219 185128 - 184859 - | hypothetical protein NSE_0220 185240 - 185884 + | putative thiamine-phosphate pyrophosphorylase TERM 114 185979 - 185990 + G 71 -2.2 -5.08878 | TTTGTACATAGATTT GCGT AAGA ATGC TTTTATTTCTATCTT NSE_0221 185965 - 186066 + | hypothetical protein TERM 115 188921 - 188937 + G 70 -2.9 -4.91712 | opp_overlap 188917, overlap 188924 GCATGAGGAAACTTC CGACTTC AGG GAAGGTG TTTTTCTCCATTAGA carB 186097 - 189318 + | carbamoyl-phosphate synthase, large subunit tldD 189556 - 190989 + | TldD protein purA 191077 - 192330 + | adenylosuccinate synthetase TERM 116 192520 - 192532 + G 95 -5.5 -5.86332 | opp_overlap 192520, overlap 192513 192504 TTCCTGAATGGCAAA GCCAT TGG GTGGC TTTTTTTTCGATTCC NSE_0226 192474 - 193121 + | putative phosphatidylglycerophosphatase A NSE_0227 193567 - 193229 - | thioredoxin gpsA 194720 - 193716 - | glycerol-3-phosphate dehydrogenase (NAD(P)+) radC 195476 - 194766 - | DNA repair protein RadC NSE_0230 196012 - 195578 - | DNA-binding protein NSE_0231 196177 - 196052 - | hypothetical protein TERM 117 196115 - 196084 - G 71 -6.8 -4.18443 | overlap 196081 GATAAACAACAACAA TCATATTAGCATTA TTAA CAATACCAATATGA TAAATCCTATTTTCT TERM 118 196265 - 196252 - R 72 -5.3 -4.63932 | TATTTCCTAATAAAA TTAGG AAAA CCTAA AGAAAGGGTCTATAA secA 198702 - 196288 - | preprotein translocase, SecA subunit NSE_0233 198879 - 199037 + | hypothetical protein TERM 119 199408 - 199396 - g 70 -7.7 -3.63336 | AGATATGATCTTAAA CTTGC GTT GCAAG AACATAAAAACTCCT NSE_0234 199190 - 199987 + | DNA-binding response regulator purE 200564 - 200085 - | phosphoribosylaminoimidazole carboxylase, catalytic subunit NSE_0236 201694 - 200705 - | metalloendopeptidase glycoprotease family NSE_0237 202701 - 201691 - | TRAP transporter solute receptor TAXI family protein TERM 120 202011 - 202021 + g 73 -5.4 -4.60258 | AATACGGATGATCTA GAAG TAA CTTC TTTCTTGTTTCATCA NSE_0238 202982 - 203947 + | polyprenyl synthetase family protein NSE_0239 204126 - 204022 - | hypothetical protein NSE_0240 204135 - 205076 + | hypothetical protein NSE_0241 205073 - 205816 + | hypothetical protein TERM 121 205869 - 205830 - T 73 -7.2 -4.06825 | gap 1, opp_overlap 205835, overlap 205823 GAAAACAACATGAAA GACAGGACCCGCAAGATAA TAT TTGT-TTGCGGGCCTCGTC TCCATATGATGAAAA NSE_0242 207426 - 205891 - | 51 kDa major antigen NSE_0243 207597 - 207469 - | hypothetical protein NSE_0244 207769 - 207575 - | hypothetical protein NSE_0245 209257 - 207848 - | hypothetical protein nth 210006 - 209356 - | endonuclease III NSE_0247 210817 - 210080 - | putative CDP-diacylglycerol--serine O-phosphatidyltransferase NSE_0248 211501 - 210824 - | phosphatidylserine decarboxylase-related protein TERM 122 211459 - 211430 - G 100 -5.7 -5.96521 | gap 1 AGGAACGAAAAAAAA GGCTAC-CGCTG TGCAAGC CAGCGTGAAGCC GATAGTGAGCAAGCC NSE_0249 211997 - 211566 - | hypothetical protein sucD 213069 - 212197 - | succinyl-CoA synthetase, alpha subunit TERM 123 212372 - 212382 + g 84 -5.4 -5.37593 | opp_overlap 212372 GCACCGGCAATAAAA CCAA CTG TTGG TTTTTTACTTTGCGA TERM 124 212382 - 212372 - G 73 -5.4 -4.64676 | opp_overlap 212372 GCACCGGCAATAAAA CCAA CTG TTGG TTTTTTACTTTGCGA sucC 214247 - 213069 - | succinyl-CoA synthetase, beta subunit TERM 125 214827 - 214813 - g 82 -5 -5.36364 | opp_overlap 214813, overlap 214814 TGAAAAACATAAAAA CTCAAC ATG GTTGAA TAGATTTGCCGATGG thiL 214520 - 215461 + | thiamine-monophosphate kinase tpiA 215641 - 216366 + | triosephosphate isomerase NSE_0255 216393 - 217301 + | rhodanese domain-containing protein TERM 126 218034 - 218050 + G 71 -8.7 -3.31248 | TCTTTTTGTGGTCTT GTTGGTC TTA GACCGAC TTATGGGCGCTGTTC gatA 217455 - 218903 + | glutamyl-tRNA(Gln) amidotransferase, A subunit rpmG 218995 - 219174 + | ribosomal protein L33 ctaG 219190 - 219735 + | cytochrome C oxidase assembly protein dnaA 220315 - 221739 + | chromosomal replication initiator protein DnaA asd 221807 - 222811 + | aspartate-semialdehyde dehydrogenase NSE_0261 222878 - 223009 + | hypothetical protein NSE_0262 223822 - 223091 - | RNA methyltransferase TERM 127 224030 - 224014 - H 72 -8.7 -3.25192 | opp_overlap 224014, overlap 224012 TTCAATGGTAGAATA CCAGCCT TCC AAGCTGG TTGTGTGGGTTCGAT rpsJ 224149 - 224460 + | ribosomal protein S10 TERM 128 224496 - 224511 + G 76 -2.5 -5.33405 | AGGTTGGCTGTACCT CGGTC TACGAC GATCG TTTTTCTTTAGTGCC rplC 224453 - 225085 + | ribosomal protein L3 TERM 129 225154 - 225174 + G 72 -7.6 -3.81287 | gap 1 AGTGTCGCGGTGGAT CGTGCGCTT ATAG AAGCGC-CG TTTCGTCCTGATCTG rplD 225085 - 225729 + | ribosomal protein L4 rplW 225726 - 226010 + | ribosomal protein L23 TERM 130 226478 - 226490 + G 78 -9.1 -3.8591 | opp_overlap 226472 GAGTTGAAACCCGGT GCTGG TGG CCAGC TTGTTCGTTCTGCAG rplB 226016 - 226855 + | 50S ribosomal protein L2 rpsS 226864 - 227139 + | ribosomal protein S19 TERM 131 227265 - 227253 - g 71 -3.4 -5.00616 | opp_overlap 227240 TTGTTTTTGAAAAAA GCTT TAGCT AAGC CGCTTTCAAAGGTTT rplV 227136 - 227477 + | ribosomal protein L22 rpsC 227461 - 228096 + | ribosomal protein S3 rplP 228112 - 228531 + | 50S ribosomal protein L16 rpmC 228528 - 228722 + | ribosomal protein L29 rpsQ 228724 - 228948 + | ribosomal protein S17 rplN 228966 - 229325 + | ribosomal protein L14 rplX 229322 - 229636 + | ribosomal protein L24 rplE 229652 - 230185 + | 50S ribosomal protein L5 rpsN 230202 - 230507 + | ribosomal protein S14 rpsH 230527 - 230922 + | ribosomal protein S8 rplF 230925 - 231455 + | ribosomal protein L6 rplR 231475 - 231828 + | ribosomal protein L18 rpsE 231845 - 232363 + | ribosomal protein S5 TERM 132 232501 - 232536 + G 76 -10.4 -3.06183 | overlap 232482 232513 GGAGTCACTCTTTCT CGTATGGAGGGAGGAC AGCA GTCCTTCCTTCGCGCG TTACCTAAGCGTGGA rplO 232360 - 232809 + | ribosomal protein L15 secY 232806 - 234116 + | preprotein translocase, SecY subunit adk 234113 - 234742 + | adenylate kinase rpsM 234756 - 235127 + | 30S ribosomal protein S13 rpsK 235140 - 235502 + | 30S ribosomal protein S11 rpoA 235540 - 236541 + | DNA-directed RNA polymerase subunit alpha rplQ 236560 - 236913 + | ribosomal protein L17 NSE_0291 237261 - 236932 - | hypothetical protein pgpA 237751 - 237242 - | phosphatidylglycerophosphatase A TERM 133 237588 - 237578 - G 85 -4 -5.4182 | AATCAGAAACAAAAA TGAT GAG ATCA GGATAACATACGCAA infC 238307 - 237738 - | translation initiation factor IF-3 TERM 134 237997 - 238013 + g 78 -2.3 -5.54907 | opp_overlap 237995, overlap 237995 TGGCGTAACTGAACC TCTTTTA TCG TAGAGGA TTTTTGTTTTCTCCG thrS 240263 - 238350 - | threonyl-tRNA synthetase TERM 135 238727 - 238746 + g 80 -6.4 -4.7629 | CTAAAATAGCTCTGT GCAGCATT ACAG GGTGCTGC TTTTTCCCTTCATGG NSE_0296 241422 - 240478 - | hypothetical protein TERM 136 240957 - 240967 + g 81 -5.4 -5.24796 | CGAAGAGCATCGTAT CACT TTC AGTG TTTTTGTTCTGTAGA TERM 137 241118 - 241104 - G 79 -8.6 -4.07877 | opp_overlap 241103 CGACCGCAGAAATAA CAACTG TTG CAGTTG GATTATTTACTTTTA NSE_0297 241776 - 241441 - | iron-sulfur cluster binding protein NSE_0298 243559 - 241778 - | putative chaperone protein HscA NSE_0299 244016 - 243537 - | putative chaperone protein HscB TERM 138 243687 - 243711 + g 75 -7.2 -4.32233 | opp_overlap 243687, overlap 243678 CATGTTTTCTACTAA TGGTAGGACT TCTAC AGTTCTGCCA TTTTCCACTTTTTCT NSE_0300 244129 - 244031 - | hypothetical protein NSE_0301 244491 - 244126 - | iron-sulfur cluster assembly accessory protein iscU 244947 - 244519 - | scaffold protein iscS 246211 - 245003 - | cysteine desulfurase TERM 139 245546 - 245558 + g 81 -4.1 -5.252 | GAACAGCGGTGTCAC CCTTA TCC TAGGG TTTTTTCTGCGAATA TERM 140 245782 - 245797 + g 86 -7.6 -4.58242 | opp_overlap 245782 CAGCCATTATAGACA CCATCA TAGT TGATGG TTTTATGGCTTTTTT TERM 141 245986 - 245964 - G 77 -4.9 -4.98255 | TTTGAACGATAAAAA TTAGCCACC CCCTT GATAGCTAA ATTATTTGATTCTGT NSE_0304 247847 - 246255 - | rrf2/aminotransferase, class V family protein TERM 142 247498 - 247484 - G 75 -8.6 -3.78934 | TTTTCTCTAGAACAA CCCATA GAT TATGGG TGCAGCATTTTTTTG TERM 143 249766 - 249754 - g 78 -4.1 -5.11033 | CATAATCTTAAAAAA CGATC TAG AATCG GGTGTTTCTGCGATG NSE_0305 248179 - 249813 + | putative transporter NSE_0306 249797 - 250381 + | ribosomal 5S rRNA E-loop binding protein Ctc/L25/TL5 pth 250381 - 250965 + | peptidyl-tRNA hydrolase gshA 252247 - 251072 - | glutamate--cysteine ligase TERM 144 251266 - 251277 + g 85 -4.4 -5.47218 | TCGTATTATAGCGTG TTGC GAAT GCAA TTTTTTTCCCTAGAA coaE 253032 - 252430 - | dephospho-CoA kinase NSE_0310 253793 - 253032 - | putative ATP-NAD kinase TERM 145 253749 - 253764 + g 86 -9 -4.36914 | opp_overlap 253748 CGAACTAATAAACGC GGCAAC AGAT GTTGCC TTTTCTGAGCCAGAA grxC 254065 - 253796 - | glutaredoxin 3 rpoD 256475 - 254613 - | RNA polymerase sigma factor RpoD clpA 258797 - 256575 - | ATP-dependent Clp protease, ATP-binding subunit ClpA TERM 146 257503 - 257491 - G 82 -7.7 -4.43012 | opp_overlap 257491 AGCGGAATATTAAAA CGCTT TGC AAGCG TTTCCCTGACATACT TERM 147 257491 - 257503 + g 70 -7.7 -3.6608 | opp_overlap 257491 AGCGGAATATTAAAA CGCTT TGC AAGCG TTTCCCTGACATACT NSE_0314 259135 - 258824 - | hypothetical protein NSE_0315 259876 - 259202 - | putative lipoprotein releasing system ATP-binding protein LolD NSE_0316 260131 - 260259 + | hypothetical protein NSE_0317 262534 - 260324 - | ComEC/Rec2 family protein TERM 148 262555 - 262566 + H 73 -4.4 -4.88495 | opp_overlap 262549 262555 ATTTCTAAATAATAT TGGT ATTA ACCA TTTTGTTGTATCTAT TERM 149 262793 - 262809 + G 82 -7.9 -4.56367 | CTTATGGATTGATAC TCACCCC AAA GGGGAGA TTTATTTGTGACCTA NSE_0318 262669 - 263601 + | aminomethyl transferase family protein yajC 263902 - 264204 + | preprotein translocase, YajC subunit pdxJ 264220 - 264954 + | pyridoxal phosphate biosynthetic protein PdxJ TERM 150 265277 - 265245 - gf 71 -3.7 -4.89233 | gap 1 TAGGAACACTAAAAA TTCAAAACTGAGTA AGTCGG CACT-AGTTTTGAA GAAGCGTATAATGAA NSE_0321 265024 - 265332 + | ribosomal protein L28 TERM 151 266185 - 266164 - gf 78 -4.3 -5.08824 | overlap 266165 TTTGCATCTAAAAAA TGCTAGAGC TGGG GCTCTGGCG AAGTTGGTCTAAATT TERM 152 266184 - 266165 - gf 70 -7.8 -3.64812 | overlap 266164 TTGCATCTAAAAAAT GCTAGAGC TGGG GCTCTGGC GAAGTTGGTCTAAAT lipA 265307 - 266197 + | lipoyl synthase NSE_0323 266366 - 266845 + | aromatic rich family protein NSE_0324 267776 - 266964 - | hypothetical protein NSE_0326 268317 - 268039 - | hypothetical protein TERM 153 268071 - 268082 + g 79 -3 -5.34555 | GTCTTTTGTGACTGA CTTT AGAT AAAG TTTTTTCTGATCTGA NSE_0327 268330 - 269088 + | CBS/transporter associated domain-containing protein NSE_0328 269201 - 270601 + | hypothetical protein NSE_0329 270637 - 270780 + | hypothetical protein NSE_0330 270789 - 271208 + | ferredoxin TERM 154 271528 - 271511 - gf 77 -4.9 -4.98255 | gap 1, opp_overlap 271513, overlap 271514 TGGCAAGGATAAAAA TAG-GCCA GCT TGGCACTA CGTTCTTGTGGATAA NSE_0331 271230 - 271682 + | hypothetical protein NSE_0332 271591 - 271791 + | hypothetical protein cysS 271801 - 273324 + | cysteinyl-tRNA synthetase TERM 155 273426 - 273438 + G 100 -4.1 -6.41881 | TATATTGTTCGTATG CCGAA AAG TTTGG TTTTTTTTTCTTCTC NSE_0334 273423 - 273617 + | hypothetical protein TERM 156 274114 - 274103 - g 82 -2.2 -5.65513 | GAGGAAGCAAAAAAA CGTG GTGC CACA GCTATAGTCAGAAGA TERM 157 274947 - 274959 + G 74 -4.1 -5.05228 | TGAGGAGTTCGCTAT TACTC GCT GAGTG TTTTTCTGCTTTCCT mutS 273806 - 276253 + | DNA mismatch repair protein MutS TERM 158 276640 - 276624 - g 71 -8.7 -3.3506 | opp_overlap 276626 GTGAAACTGTTAGAA GAGTCAG GGG CCGACTC GATTCACATTGATGT rpe 276543 - 277205 + | ribulose-phosphate 3-epimerase map 278143 - 277355 - | methionine aminopeptidase, type I NSE_0338 278385 - 278179 - | hypothetical protein NSE_0339 278876 - 278349 - | Coq7 family protein NSE_0340 279351 - 278854 - | DsbB family disulfide bond formation protein rpoH 279854 - 280720 + | RNA polymerase sigma-32 factor ftsZ 280727 - 281845 + | cell division protein FtsZ NSE_0343 282179 - 282739 + | ribosomal subunit interface protein NSE_0344 282905 - 283042 + | hypothetical protein tyrS 284266 - 283091 - | tyrosyl-tRNA synthetase TERM 159 283391 - 283403 + g 80 -4.8 -5.13521 | TATTCTAGTTGCCTC GGTG GCTAG CACC TTTTTTGCCTCATTT bfr 284747 - 284286 - | bacterioferritin TERM 160 284353 - 284363 + g 81 -5.4 -5.19251 | AATTGCTGCTCCAAC CACT CCA AGTG TTTTTCTTCGTCTTG TERM 161 284484 - 284494 + g 76 -2.6 -5.27923 | TTCGAGGTCGCGGTC TTTT TCA AAAA TTTTTTCTACACTTC lon 287461 - 284981 - | ATP-dependent protease La TERM 162 286526 - 286538 + g 72 -7.7 -3.75617 | opp_overlap 286526 AGTTGCTTCAGCAGA CATGG GCA CCATG TTCTTGAGCTTTTTT NSE_0348 288096 - 287515 - | hypothetical protein NSE_0349 288503 - 288093 - | hypothetical protein glnA 289937 - 288531 - | glutamine synthetase, type I NSE_0351 290087 - 290185 + | hypothetical protein NSE_0352 290182 - 290631 + | transcriptional regulator NrdR NSE_0353 290860 - 290732 - | hypothetical protein NSE_0354 290948 - 290778 - | hypothetical protein TERM 163 290855 - 290866 + Gg 70 -3.6 -4.87803 | GTCTGTTTTTAGTTG GGGC ATTG GTCC TTTTATTTGCAGCTG TERM 164 290880 - 290893 + Ggr 82 -3.1 -5.42975 | CCTTTTATTTGCAGC TGAGG ACCA TCTCA TTTTTATTTCTCTGC NSE_0355 290824 - 290922 + | hypothetical protein NSE_0356 292789 - 290897 - | UvrD/Rep family helicase TERM 165 291086 - 291106 + gr 74 -9.7 -2.79023 | ATGTGGGAATGTTCC ATCCTCCCA ACC TGGGAGGAA TACTTGCTCAAATTC TERM 166 292816 - 292827 + r 78 -7.2 -4.5123 | CTACATATTGTTTAA GCGC TGTT GCGC TTTATTTGCTGGGTT NSE_0357 293970 - 293164 - | TatD family hydrolase NSE_0358 294172 - 294053 - | hypothetical protein NSE_0359 294711 - 294217 - | putative protein-export protein SecB TERM 167 294554 - 294568 + g 78 -5.6 -4.78107 | ATATTGCACTGCACA TCCACC TCC GGAGGA TTTTTCATGATGCTA TERM 168 294952 - 294940 - g 74 -4.9 -4.78077 | CGGAAGTAAAAGAAA TTCTT GAA AAGAA GGTCAGGGACATTGA TERM 169 295320 - 295344 + G 70 -9.3 -2.87132 | GAGCAGATTAATGTT GTACGCGATGA TGC TGGTCGCGTAC TGTCTGGGGACCACG NSE_0360 294822 - 295448 + | Tim44-like domain-containing protein NSE_0361 295429 - 295659 + | putative lipoprotein ksgA 296469 - 295681 - | dimethyladenosine transferase NSE_0363 296464 - 296598 + | hypothetical protein NSE_0364 296591 - 296713 + | hypothetical protein NSE_0365 296771 - 297895 + | hypothetical protein TERM 170 298314 - 298324 + G 81 -5.4 -5.22006 | ATCAGGGAAGGGGTG CTGT ATC ACAG TTTTTCTTATGATGG NSE_0366 297885 - 300113 + | sensor histidine kinase/response regulator TERM 171 300578 - 300558 - g 75 -8.3 -3.76402 | opp_overlap 300561, overlap 300561 AGTTTAGGGATGAAA TCAGGCCAA GAT TTGGCCTTA TGCGTGCCCGTGAGT TERM 172 300561 - 300575 + G 76 -10 -3.35996 | opp_overlap 300558 300561 TTAGGGATGAAATCA GGCCAA GAT TTGGCC TTATGCGTGCCCGTG TERM 173 300575 - 300561 - g 73 -10 -2.97667 | opp_overlap 300561, overlap 300558 TTAGGGATGAAATCA GGCCAA GAT TTGGCC TTATGCGTGCCCGTG proS 300119 - 301429 + | prolyl-tRNA synthetase NSE_0368 301456 - 302184 + | hypothetical protein TERM 174 302451 - 302475 + G 83 -8.7 -4.0896 | overlap 302454 TCCTCGAGTGCTTGT GAGCTTTATCA TCG TGATAAAGATC TTTTCCGCAAGATTT TERM 175 304080 - 304090 + G 71 -6.8 -4.09511 | opp_overlap 304087 AAGTTGCTTCCTATC CAGC AAG GCTG TTTTGCAGCGATCTT ppdK 302295 - 304898 + | pyruvate phosphate dikinase NSE_0370 304899 - 305108 + | hypothetical protein NSE_0371 305652 - 305092 - | putative pyridoxamine 5-phosphate oxidase TERM 176 305245 - 305260 + g 73 -5.4 -4.58283 | TCGTCCTATTGGGTC GCTGGA ATTT TCTAGC TTTTTCACCGCATTA NSE_0372 306113 - 306853 + | hypothetical protein NSE_0373 307957 - 306962 - | putative tRNA-dihydrouridine synthase TERM 177 307768 - 307795 + g 78 -4.2 -5.08255 | opp_overlap 307772 307776 TGATATCTTCTCTAG GAGACAAAGAAA CTTT TTTCATTGTATC TTTTGTTTTCAGAAT surE 308930 - 308166 - | acid phosphatase SurE NSE_0375 309076 - 308915 - | hypothetical protein sdhA 309273 - 311066 + | succinate dehydrogenase flavoprotein subunit NSE_0377 311989 - 311189 - | hypothetical protein NSE_0379 312247 - 312134 - | hypothetical protein NSE_0378 312028 - 312189 + | hypothetical protein qor 312371 - 313381 + | quinone oxidoreductase NSE_0381 313382 - 313522 + | hypothetical protein NSE_0382 313569 - 313709 + | hypothetical protein NSE_0383 313714 - 314004 + | putative oxidoreductase NSE_0384 314001 - 315134 + | UbiH/UbiF/VisC/COQ6 family ubiquinone biosynthesis hydroxylase NSE_0385 315148 - 316008 + | putative porphobilinogen deaminase NSE_0386 317437 - 316415 - | NADH-ubiquinone oxidoreductase family protein TERM 178 316790 - 316759 - G 72 -7.4 -4.07568 | gap 1 TTTCGTTCTGCAAAA TTTTAGCGA-CTAGC AAA GCTAGGTCGCCAACA TAAACTGGTTGTATT NSE_0387 317713 - 317621 - | hypothetical protein NSE_0388 318903 - 317767 - | putative DNA processing protein DprA NSE_0389 319052 - 319468 + | hypothetical protein NSE_0390 319441 - 319533 + | hypothetical protein def 320139 - 320699 + | peptide deformylase TERM 179 321278 - 321308 + G 73 -9.1 -3.53012 | gap 1 TGTGAGGAGTATCAT GCTT-TTTCCCCGG GATC CCGGGAAAAGAAGC TTTGAAGCGGAGGAA hemB 321045 - 322010 + | delta-aminolevulinic acid dehydratase NSE_0395 323052 - 322213 - | YihY family protein TERM 180 323764 - 323778 + G 89 -3.6 -5.73978 | TCCAACCTCTTTGTT GATAAG CCC TTTATC TTTTTTGTTTGTGGT atpB 323162 - 323893 + | F0F1 ATP synthase subunit A atpE 323916 - 324143 + | F0F1 ATP synthase subunit C TERM 181 324160 - 324182 + G 78 -5.6 -4.76874 | opp_overlap 324162, overlap 324140 TGCCTCAGTTTGATA TATCTACCTA TTT TGGGCAGATA TTTTGGTTTTGTATT atpX 324144 - 324674 + | ATP synthase F0, B' chain TERM 182 325102 - 325086 - g 71 -9.4 -2.91772 | opp_overlap 325085 325083 325088, overlap 325074 325085 325088 AATCGCTTGAGAAAG CAGCGC ATGAA GCGCTG GTGTTACATATGGCC NSE_0399 324665 - 325159 + | putative ATPase F0, B chain NSE_0400 325062 - 325439 + | hypothetical protein ribE-1 326046 - 325597 - | 6,7-dimethyl-8-ribityllumazine synthase TERM 183 326226 - 326246 + rH 83 -6.9 -4.92783 | opp_overlap 326226, overlap 326224 TAATGTTAAAATTGA CTCAAGGGA GGC TTTCTTGAG TTTTTGTCATAGCTT NSE_0402 327927 - 326227 - | inner membrane protein, 60 kDa TERM 184 326601 - 326590 - GH 91 -7.2 -5.38951 | AATCCATAGAAAAAA CGGC GCCT GCCG CATTTCTACAGTTAT NSE_0403 327915 - 328007 + | hypothetical protein NSE_0404 328184 - 329476 + | CBS domain-containing protein NSE_0405 329516 - 329632 + | hypothetical protein prfA 329625 - 330728 + | peptide chain release factor 1 TERM 185 330764 - 330776 + F 70 -4.8 -4.61527 | CTAATGAGTGTTATT CTGC TGAAT GCAG TTTTTGAACGGTTTT TERM 186 330943 - 330955 + G 82 -3.3 -5.47218 | TTATACGGCCTAGTC GTGCT ACC AGCTC TTTTTTTACCTCCAG NSE_0407 330832 - 331626 + | 1-acyl-sn-glycerol-3-phosphate acyltransferase family protein TERM 187 332084 - 332072 - g 79 -3.4 -5.30616 | opp_overlap 332072, overlap 332066 GCACTGAAACAAAAA GTCT GGAAT AGAC TTTATGAAATGTATC TERM 188 332325 - 332315 - g 76 -6.8 -4.46212 | GTTTCGAGGAGAAAA GCAC TTG GTGC AGTACATGAGGCTGC rpsA 331727 - 333388 + | ribosomal protein S1 sppA 333406 - 334332 + | signal peptide peptidase SppA, 36K type NSE_0410 334411 - 336084 + | putative ABC transporter, ATP-binding/permease protein nrdA 337971 - 336154 - | ribonucleotide-diphosphate reductase subunit alpha TERM 189 336273 - 336285 + g 81 -5.5 -5.08824 | opp_overlap 336273 ACCGGCAATAGTAAA GGCTT TTT AGGCC TTTTTTCCATCCGAG TERM 190 336665 - 336688 + g 71 -9 -3.28712 | gap 1, opp_overlap 336683, overlap 336667 GCAATGATCGAGATG GAT-GCTGTTG GCG CAACAGCGATC TTATGGACAAACCGC TERM 191 338693 - 338703 + G 95 -5.4 -5.75945 | AGCACAGCGCCGATT GAAG TTG CTTC TTTTTTTTCGAAGGT NSE_0413 338504 - 338857 + | HIT domain-containing protein NSE_0414 338905 - 339021 + | hypothetical protein TERM 192 339171 - 339138 - g 75 -8.9 -3.727 | overlap 339166 CGTAGGATACTCAAA GTTGCCACCTGGAAT GTTA ATTCCATAAGGCAAC GTGCCGAAGCTGTCT TERM 193 339482 - 339465 - g 73 -9.1 -3.43117 | gap 1, overlap 339468 ATACCGAATGCACAA GCAGCGGG CTC CCCGC-GC TTCGAATACAAAATG TERM 194 339480 - 339468 - g 75 -10.5 -2.86539 | overlap 339465 CCGAATGCACAAGCA GCGGG CTC CCCGC GCTTCGAATACAAAA TERM 195 339738 - 339713 - g 75 -9.1 -3.59312 | opp_overlap 339718, overlap 339711 339714 ATTTAGAATGAAATA TCCAACTAAAC AGGA GTTTAGTTGGT GGGACTACAGAGGTG TERM 196 339737 - 339714 - g 89 -12.6 -2.74864 | opp_overlap 339718, overlap 339713 339711 TTTAGAATGAAATAT CCAACTAAAC AGGA GTTTAGTTGG TGGGACTACAGAGGT xth 339114 - 339911 + | exodeoxyribonuclease III TERM 197 339984 - 339997 + T 72 -2.4 -5.27923 | opp_overlap 339983, overlap 339983 339990 CAGATTGAATAAATT GTGT TTCTCC ACAC TTTTTTATGGAGTTC NSE_0416 340925 - 340113 - | putative competence protein F NSE_0417 342019 - 341123 - | putative protein-export membrane protein SecF NSE_0418 342179 - 342328 + | hypothetical protein NSE_0419 342339 - 342527 + | hypothetical protein TERM 198 342745 - 342712 - g 89 -7.5 -5.07275 | opp_overlap 342713, overlap 342704 342713 342733 GGAGATAGAGAAAAA TCCTCTAGATGTGTA TAAG TACACCTCTAAAGGT AATTTGGTTGCAGTT TERM 199 342744 - 342713 - g 84 -11 -3.6328 | opp_overlap 342713, overlap 342704 342712 342733 GAGATAGAGAAAAAT CCTCTAGATGTGTA TAAG TACACCTCTAAAGG TAATTTGGTTGCAGT NSE_0420 342545 - 344797 + | malic enzyme NSE_0421 344835 - 344939 + | hypothetical protein NSE_0422 345357 - 344977 - | hypothetical protein ftsH 347264 - 345354 - | ATP-dependent metalloprotease FtsH TERM 200 346038 - 346052 + gH 70 -2.8 -4.94058 | overlap 346033 TAACTTTTCTTCTTC TCTCAT GAC AAGAGA TTTTCTTTCCATTCC NSE_0424 347186 - 347419 + | hypothetical protein NSE_0425 347410 - 347502 + | hypothetical protein TERM 201 348122 - 348107 - g 71 -9 -3.35996 | opp_overlap 348107 CATTGGCACGTATAA GCCATC CTTT GATGGC TTATACACGGAACGT TERM 202 348107 - 348122 + G 71 -9 -3.28791 | opp_overlap 348107 CATTGGCACGTATAA GCCATC CTTT GATGGC TTATACACGGAACGT NSE_0426 347553 - 350183 + | putative phenylalanyl-tRNA synthetase, beta subunit TERM 203 350630 - 350616 - g 91 -3.5 -5.84381 | TCATTAAGAAAAAAA TCGCC GATAG GGCAA GCACTTCAATAATAC ftsA 350258 - 351460 + | cell division protein FtsA NSE_0428 352234 - 351773 - | hypothetical protein nuoA 352330 - 352785 + | NADH dehydrogenase I, A subunit NSE_0430 352776 - 352904 + | hypothetical protein nuoB 352952 - 353455 + | NADH dehydrogenase I, B subunit nuoC 353471 - 354031 + | NADH dehydrogenase I, C subunit gap 354191 - 355207 + | glyceraldehyde-3-phosphate dehydrogenase, type I NSE_0435 355336 - 355479 + | hypothetical protein pgk 355523 - 356650 + | phosphoglycerate kinase NSE_0437 356664 - 356768 + | hypothetical protein ispH 357672 - 356761 - | 4-hydroxy-3-methylbut-2-enyl diphosphate reductase NSE_0439 357701 - 357925 + | hypothetical protein NSE_0440 357891 - 358187 + | hypothetical protein NSE_0441 358184 - 358894 + | hypothetical protein NSE_0442 359143 - 360159 + | EAL domain-containing protein dxr 360156 - 361325 + | 1-deoxy-D-xylulose 5-phosphate reductoisomerase obgE 362551 - 361526 - | GTPase ObgE NSE_0445 362716 - 362555 - | hypothetical protein TERM 204 362708 - 362725 + g 95 -5.7 -5.64321 | GAGTGAGAATCCTTG TTTATAC AAAT GTATAAA TTTTTATTTTGTTGT NSE_0446 363071 - 363745 + | short chain dehydrogenase/reductase family oxidoreductase TERM 205 364473 - 364489 + G 85 -4.3 -5.47218 | overlap 364470 364468 ATGCCCGTTTCAGCC GGATGCC GGA GGTTTCC TTTTTTTGGATCGAA NSE_0447 363841 - 364764 + | phage integrase family site specific recombinase NSE_0448 365716 - 364994 - | putative phosphoribosylformylglycinamidine synthase I NSE_0449 368309 - 365808 - | hypothetical protein TERM 206 366004 - 366032 + gH 100 -5.3 -5.87688 | overlap 366005 GCAATGAATATATTT CTTAGACGGTCAG ATA TTGGCTGTCTAAC TTTTTTTTGCGTTGT TERM 207 366005 - 366031 + gH 83 -8.8 -4.10173 | overlap 366004 CAATGAATATATTTC TTAGACGGTCAG ATA TTGGCTGTCTAA CTTTTTTTTGCGTTG TERM 208 366172 - 366198 + gH 85 -2.3 -5.8187 | AACTTACTTGAGAAG CTTTCTTGGTG AGCCG TATCAGGAAGG TTTTTTTCTTCCATG TERM 209 367416 - 367428 + gH 95 -4.8 -5.80364 | opp_overlap 367416 CAAACTTATGCAAAA TGCC CTCAA GGCA TTTTTTTGTTGAGGT NSE_0450 368228 - 368332 + | hypothetical protein TERM 210 368547 - 368565 + FH 71 -6.8 -4.10164 | opp_overlap 368555, overlap 368548 TATATTAAATTTTGA TCTGAAAT CCT ATTTCAGG TTTATATAATAATAA NSE_0451 368635 - 368757 + | hypothetical protein acpP 368757 - 369191 + | acyl carrier protein TERM 211 369579 - 369593 + GF 80 -2.8 -5.4505 | CGTGAAGAGGGTATA CGGA AGGTGAG TCCG TTTTTTATTCCGGCA fabF 369192 - 370439 + | 3-oxoacyl-(acyl-carrier-protein) synthase II hemF 370372 - 371292 + | coproporphyrinogen III oxidase NSE_0455 371337 - 371918 + | hypothetical protein NSE_0456 372094 - 374184 + | hypothetical protein TERM 212 374282 - 374316 + G 100 -13 -4.03806 | overlap 374312 GCTTCAGAAAATTTG GTGGGGTCTTATCAGT TGA AGTGATAAGGCCTCAC TTTGTGAGTTTGCTT TERM 213 374312 - 374324 + G 76 -7.7 -4.11412 | overlap 374282 TTGAAGTGATAAGGC CTCAC TTT GTGAG TTTGCTTCTTAATTA NSE_0457 374248 - 374340 + | hypothetical protein NSE_0458 374999 - 374463 - | putative iron-sulfur cluster assembly accessory protein NSE_0459 375053 - 375145 + | hypothetical protein NSE_0460 375359 - 376516 + | putative deoxyguanosinetriphosphate triphosphohydrolase NSE_0461 376571 - 377284 + | putative DNA repair protein RecO TERM 214 377799 - 377815 + G 70 -7.9 -3.72231 | opp_overlap 377788, overlap 377804 TAAAGCACTGGTGAA TGCCGCG ATG CTCGGCA TTGTTCGCTCTGTAA TERM 215 378049 - 378074 + G 70 -5.5 -4.564 | CCCTTTTCGTCGATC TTGTACTTTCT TGAT AGGGAGTGCAA TTTTGCTTTGGAATT NSE_0462 377728 - 378228 + | hypothetical protein TERM 216 378963 - 378973 + G 71 -4 -4.77036 | TGTTGAATTTGCGTG CATT TAT AATG TTTTTGGTAGTAAGG TERM 217 379679 - 379669 - g 71 -6.8 -4.16279 | TACATTATTGCAAAA GCCT CGG AGGC AACTGTTGAAAGCCT lpdA-1 378409 - 379782 + | dihydrolipoamide dehydrogenase NSE_0464 379866 - 380216 + | hypothetical protein mgtE 381688 - 380375 - | magnesium transporter TERM 218 381082 - 381093 + g 81 -4.4 -5.26155 | CCTCCTGATCTTGAC CTGT CTCG ACAG TTTTTATATTTGTCT TERM 219 381894 - 381883 - R 76 -3 -5.42259 | TCATTTCCAAAAAAA CAAA AGCC TTTG GATTAATTACCTTTG NSE_0466 382969 - 381860 - | HK97 family phage major capsid protein NSE_0467 385870 - 383147 - | ATP-dependent DNA helicase UvrD trmU 387092 - 385977 - | tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase TERM 220 386318 - 386343 + g 72 -9.9 -2.87211 | overlap 386321 ATCCGTGTCTTTGTC CAATGGTATAA TGAA TTGTACCATTG TGTGTGCCAAGGACT TERM 221 386887 - 386899 + g 79 -3.3 -5.30448 | overlap 386893 TCAAATATGTCCGAA CCTGC ACA GCAAG TTTTTCTGTTTGTTT NSE_0469 387235 - 387405 + | hypothetical protein dnaQ 387389 - 388075 + | DNA polymerase III, epsilon subunit TERM 222 388252 - 388269 + F 72 -5.7 -4.62002 | opp_overlap 388251 AACCAGACAGTAATG TTAAAAC ACTT GTTTTAA TTTTCTGTGATTAGT NSE_0471 388285 - 389922 + | M24 family metallopeptidase NSE_0472 390848 - 390009 - | putative hydrolase TERM 223 390863 - 390850 - R 71 -4.5 -4.78266 | overlap 390853 AAAGAAAACAACAAA GGAGT AGAA ACCCC GATCCTACTGACCTC cycM 391514 - 390975 - | cytochrome c purN 392234 - 391656 - | phosphoribosylglycinamide formyltransferase pepA 393814 - 392294 - | cytosol aminopeptidase TERM 224 392533 - 392549 + g 73 -3.8 -5.0538 | opp_overlap 392533 CTGCGACTTCAGAAT TTATGA GATCA TCATAA TTTTTTGACATAGGC TERM 225 394038 - 394071 + H 75 -8.3 -3.7732 | opp_overlap 394038 GAGGAGTCAAATGCA TTGCAGCAGCACATA CATT TATGTGTTGGTGTAA TTATTCATGTGGGGG TERM 226 394973 - 394983 + G 76 -6.8 -4.47551 | overlap 394972 CTCGAGCAGATAGGT CTCC TGG GGAG TTTTATCAATTAGAT TERM 227 395315 - 395356 + G 73 -5.2 -4.73614 | gap 1, opp_overlap 395315, overlap 395317 TTGATGAGATGATAA GATATGCTACCACA-GAGC TCTGT GCTCGTGGGTTAGCATACC TTTGTTTTGATAATG aspS 394279 - 396045 + | aspartyl-tRNA synthetase NSE_0478 397252 - 396275 - | UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase, truncation TERM 228 396424 - 396438 + g 76 -2.8 -5.26316 | GGTGTTGGTTGTGAT CAAGTA GTT TACATG TTTTTTGTGACCTAC TERM 229 397171 - 397182 + g 71 -3 -4.92777 | TTGAAAACTTGCTTC TTGA GATG TCAA TTTTTGCTTGGTATT pstA 397522 - 398715 + | phosphate ABC transporter, permease protein PstA TERM 230 398960 - 398936 - g 73 -5.8 -4.55689 | opp_overlap 398936 ATCATGTAGAGAAAA TTTCTGTCCC GACTG AGAACAGAAA TATTGCGATGATTTT TERM 231 399703 - 399721 + G 100 -6.1 -5.96521 | AAAATCTCCCTTCGA TTAGATC ACAAA GATCTAA TTTTTTTTGATTGAT NSE_0480 398722 - 399735 + | ABC transporter, ATP-binding protein NSE_0481 399748 - 399903 + | twin arginine-targeting protein translocase TERM 232 399918 - 399957 + T 71 -9.4 -2.55267 | gap 1, overlap 399908 399927 GCGTCTCTCATTTTT ATTCTG-GTGGCAAAGCAG CTT TTGCTTTGCCACTCCGAAG TGAATTAGACTGTTT NSE_0482 400053 - 399916 - | hypothetical protein TERM 233 400042 - 400052 + g 86 -3.2 -5.64421 | TGGGATGCCTGTTGT TGGG CCG TCCA TTTTTTGTTTGGGGT thiG 400180 - 400950 + | thiazole synthase NSE_0484 401073 - 401252 + | hypothetical protein folP 402062 - 401238 - | dihydropteroate synthase TERM 234 401807 - 401832 + g 77 -6.1 -4.69214 | gap 1, opp_overlap 401807, overlap 401808 TACATAGCTCAACTA TCTCCTGGA-GG ATT CCATCCAGGCGG TTTATTTCTTCCCTC folK 402830 - 402270 - | 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase NSE_0487 402840 - 402971 + | hypothetical protein metK 402908 - 404056 + | S-adenosylmethionine synthetase NSE_0489 404463 - 404059 - | hypothetical protein TERM 235 404326 - 404313 - G 71 -3.1 -5.03994 | gap 1, opp_overlap 404313 404315, overlap 404315 TCCCAGAGAGAAAAA GC-TGC ACT GCATGC ATTTTTAAACGAAGT NSE_0490 404799 - 404482 - | hypothetical protein TERM 236 404535 - 404547 + g 72 -7.7 -3.77722 | opp_overlap 404534 AATCTTTTAACAAGT TCCCT TCC AGGGA TTCTTCGTCCTTGGC NSE_0491 405158 - 405027 - | hypothetical protein NSE_0492 406326 - 405136 - | putative DNA polymerase III, gamma/tau subunit TERM 237 406285 - 406297 + g 72 -7.7 -3.81557 | overlap 406283 AACAATTTCATCGAG TAGGC GTG GCCTA TATTTGTTTGCAAGC pqqC 407230 - 406532 - | coenzyme PQQ synthesis protein C NSE_0494 407426 - 407274 - | hypothetical protein TERM 238 407538 - 407561 + G 82 -8.2 -4.39318 | opp_overlap 407522, overlap 407555 ATAAGAACACCTATT CTTTTGATGC AGAT GCATCGAAGG TTTTGAATTTGGTTA TERM 239 408814 - 408828 + G 77 -6.4 -4.64676 | opp_overlap 408814, overlap 408815 GAGTGCTAAAAATAG TCCTCA GCT TGAGGG TTTTGTTAGCCGTGG htpG 407507 - 409369 + | heat shock protein 90 TERM 240 411363 - 411351 - g 86 -3.3 -5.626 | TACTTCATAAAAAAA TCGCC GAT GGGGA TAAATCTGTCCTGCA TERM 241 411614 - 411604 - g 73 -5.4 -4.68103 | TGAAGTGCAAGAAAA GATC GGT GATC TGGAAGCTGAGAGGA TERM 242 412436 - 412419 - g 70 -7.7 -3.63922 | opp_overlap 412419 412422, overlap 412417 412422 ATGGTCCGGAAAAGA GAAGGAG ATCA CTCCTCC TTGATTATTTGCTAC TERM 243 413117 - 413105 - g 76 -10.5 -3.01791 | ACTCTTCCTCCAACA CCGCC CTT GGCGG TGGAGCCCCAAAGCA NSE_0496 409574 - 415339 + | ankyrin repeat-containing protein cutE 416796 - 415378 - | apolipoprotein N-acyltransferase NSE_0498 419252 - 416793 - | hypothetical protein TERM 244 419047 - 419007 - G 70 -10 -2.56475 | opp_overlap 419006, overlap 419006 419022 GAACTCTATATCAAG TTCTTCAAGCATATA-CCGG GAT CCGGACACATGCT-GAAGAA AATTTAAGGATGTAA TERM 245 420448 - 420438 - g 81 -4 -5.38326 | CTAACGAAATAAAAA TTCA CGA TGAA TCAGTCGAGTCTTTT ribD 419393 - 420511 + | riboflavin biosynthesis protein RibD ligA 422558 - 420546 - | DNA ligase, NAD-dependent TERM 246 422264 - 422275 + g 88 -3 -5.75538 | CAAGTGCACTTTTCA GATT AAGG AATC TTTTTGTTTTTTCGA NSE_0501 422900 - 422574 - | putative dihydroneopterin aldolase TERM 247 422865 - 422851 - G 73 -8.6 -3.61517 | opp_overlap 422838 422850, overlap 422838 ACCCTTTCCCAAGAA CGGATT CCT AATCCG GTATGTAGAGCAATT carA 423978 - 422881 - | carbamoyl-phosphate synthase, small subunit NSE_0503 424232 - 424002 - | hypothetical protein NSE_0504 424563 - 424312 - | hypothetical protein TERM 248 424639 - 424615 - R 70 -8.6 -3.19835 | opp_overlap 424617, overlap 424614 424632 TTTAACAAGATAAAG CAGCCAAGCC AACCA AGCTTGACTG TTCAAGAAACTCAAG TERM 249 424705 - 424695 - R 71 -3.2 -5.06451 | CACCATTCGAAAAAA GCTC TGC GAAC AAACCACAATCGTGC NSE_0505 425293 - 424742 - | hypothetical protein leuS 427957 - 425402 - | leucyl-tRNA synthetase TERM 250 427589 - 427602 + g 76 -6.7 -4.50122 | GCTCTTGAGAGAGGT TCGCA TCTT TGCGA TATTTTTTTCTGTCC NSE_0507 428064 - 428525 + | putative lipoprotein TERM 251 428591 - 428547 - T 81 -9.5 -3.94409 | opp_overlap 428564 CATACTACTCATAAA TTTTGTTTCTTACAGAGCAGT CAG ACTGTTCTATAAGAAACCTAA AGTGTTACAATCTCC NSE_0508 429180 - 428596 - | DNA-binding protein NSE_0509 429441 - 430142 + | CcmC family heme exporter protein TERM 252 430287 - 430303 + G 76 -10.9 -2.5602 | CGAAACTTCTTTTTC GCTTGCT GCT AGCAAGC TCGGTTGCCTAGTTG pyrB 430123 - 431001 + | aspartate carbamoyltransferase NSE_0511 431551 - 433134 + | hypothetical protein pleD 434840 - 433470 - | response regulator PleD TERM 253 433643 - 433657 + g 74 -4.3 -5.00765 | TGATAGTGCTGAATT CTGTT TTCTC AACAG TTTTTCTAATTCGTT TERM 254 434488 - 434516 + g 79 -7.6 -4.39386 | opp_overlap 434488 TTGAACCGTAATAGA GACTTTATTCTT ATGAA GAGAGTAAAGTC TTTTGCTGGTTTAAC NSE_0513 435171 - 434896 - | hypothetical protein NSE_0514 439936 - 435176 - | NAD-glutamate dehydrogenase family protein TERM 255 437668 - 437656 - GH 81 -4.1 -5.28942 | TATGGTAAACAAAAA CCTCT ACA AAAGG TTTAGGAAGAGGCAT TERM 256 438000 - 437982 - GH 82 -8.2 -4.24948 | GGATTATACTTAAAA GATACCTG CTT CAAGTATC CAGCAAAGGCGCGTA NSE_0515 439915 - 440040 + | hypothetical protein NSE_0516 440165 - 440440 + | putative glutamyl-tRNA(Gln) amidotransferase, C subunit NSE_0517 440529 - 440711 + | putative lipoprotein gltX-1 442746 - 441445 - | glutamyl-tRNA synthetase NSE_0519 443219 - 442743 - | hypothetical protein nrdF 444180 - 443212 - | ribonucleotide-diphosphate reductase subunit beta TERM 257 444916 - 444906 - g 73 -5.4 -4.67353 | TTAGTGAGGGAAAAA CAGT ATC ACTG TTACAAAGGCAGAGT nusA 444417 - 446030 + | N utilization substance protein A TERM 258 447723 - 447712 - g 78 -4.4 -5.10004 | AAAAAGAAGCAAAAA TGCT TGTC AGCA GCCACGAGTATATAA TERM 259 447952 - 447964 + G 70 -7.7 -3.60792 | CACAAGTTTCTGGGG CCTAC ATT GTAGG TTTCAGGGTTAAGAC TERM 260 448065 - 448092 + G 72 -6.3 -4.25859 | overlap 448062 CAAGAAATGGTCGAA CTTCTCGTCTC ACCAAA GACACGAGAGG TTATTTTAGGTTCCG infB 446040 - 448379 + | translation initiation factor IF-2 NSE_0523 448388 - 448681 + | putative ribosome-binding factor A TERM 261 449376 - 449366 - gf 71 -4 -4.78984 | AAAAAAAGAAAACAA GAAA AAA TTTC AACTCAGATATGACT TERM 262 449928 - 449942 + GF 73 -2.8 -5.24129 | opp_overlap 449929, overlap 449929 GATATATATGAATAT AGACAA GTG TTGTCA TTTTTTCTAGGAAGA NSE_0524 448653 - 450992 + | hypothetical protein TERM 263 451133 - 451157 + F 88 -8.7 -4.71426 | opp_overlap 451138, overlap 451138 TGTAGGATGATGCCG GAAAAGTAAGG TAG CCTTACTTTTA TTTTCTTGATAAAAA TERM 264 451138 - 451152 + F 100 -8.6 -5.28831 | opp_overlap 451138, overlap 451133 GATGATGCCGGAAAA GTAAGG TAG CCTTAC TTTTATTTTCTTGAT TERM 265 451152 - 451138 - f 79 -8.6 -4.10161 | opp_overlap 451133 451138 GATGATGCCGGAAAA GTAAGG TAG CCTTAC TTTTATTTTCTTGAT guaB 451188 - 452633 + | inosine-5'-monophosphate dehydrogenase NSE_0526 452751 - 455075 + | hypothetical protein NSE_0527 455505 - 455068 - | mce-related protein NSE_0528 455836 - 455525 - | hypothetical protein TERM 266 455629 - 455597 - GR 73 -5.6 -4.47551 | gap 1, overlap 455615 455625 ACCCAACCCACAAAA CCGCGATGCTTCAGC ATAG GATGAACCATC-CGG AACAGAATCAACAGC NSE_0529 456416 - 455796 - | 3'-5' exonuclease family protein recA 457438 - 456455 - | recA protein NSE_0531 457473 - 459203 + | sensor histidine kinase NSE_0533 459480 - 459382 - | hypothetical protein sdhB 460391 - 459627 - | succinate dehydrogenase iron-sulfur subunit TERM 267 461028 - 461008 - g 100 -8.3 -4.77567 | overlap 461010 461023 ACGCGCAGAACAAAA GCTGACTTC AAT GAAGTCATC AAGGAAGACGGCTCA TERM 268 461259 - 461243 - g 83 -8.7 -4.07877 | TTACTGTAGAAAGAA GCTGCAG TAC CTGCAAC GGGAGTGGAATGATC TERM 269 461307 - 461296 - g 78 -4.4 -5.10497 | AATCCATGCAAAAAA TGTG GAGG CACA GGACGAATCAGGAAA dnaJ 460669 - 461808 + | chaperone protein DnaJ NSE_0536 463299 - 461878 - | putative GTP-binding protein EngA ileS 463967 - 467104 + | isoleucyl-tRNA synthetase pyrE 467107 - 467727 + | orotate phosphoribosyltransferase TERM 270 468183 - 468201 + G 75 -8.8 -3.63059 | opp_overlap 468187, overlap 468179 CTCTAATAACTGAGG GAAAGCCG TTT CGGCCTTC TTCCTTTCTAGGTTA TERM 271 468197 - 468187 - g 73 -8.2 -3.69734 | opp_overlap 468183 468179 AATAACTGAGGGAAA GCCG TTT CGGC CTTCTTCCTTTCTAG TERM 272 468320 - 468337 + G 82 -6.9 -4.8048 | GGAGCTGTCCGTTCT CCTACCG TTGA CGGAAGG TTTTTCGTATGGCCC NSE_0539 467891 - 468922 + | hypothetical protein TERM 273 468980 - 469006 + T 79 -7.2 -4.63107 | opp_overlap 468987 468988, overlap 468975 TATTTCTCTGGGGGC CAGAAAAGGGGG GCC CCTCCCTTCCTG TTTTCCTTATTTCCT ffh 470362 - 469013 - | signal recognition particle protein TERM 274 469099 - 469109 + g 85 -4 -5.5074 | GGGCGAGCAGGCGAG CTTT CTC AAAG TTTTTTATTAACTTG NSE_0541 471850 - 470369 - | hypothetical protein NSE_0542 472497 - 471847 - | RDD family protein NSE_0543 473567 - 472503 - | hypothetical protein fabK 474665 - 473685 - | enoyl-(acyl-carrier-protein) reductase II ftsY 474851 - 475780 + | signal recognition particle-docking protein FtsY rrmJ 476549 - 475908 - | ribosomal RNA large subunit methyltransferase J tmk 477120 - 476521 - | thymidylate kinase sucB 478614 - 477331 - | 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase TERM 275 478073 - 478083 + g 78 -4 -5.16841 | ACTGCACGCTGTTCT GATT CCG AATC TTTTTCTTGCTCTGG pmbA 478825 - 480198 + | pmbA protein TERM 276 480211 - 480257 + T 100 -12.6 -3.92324 | opp_overlap 480210 480224 480240, overlap 480212 480235 TGAAATAAAAATATT TCCTACTTTAAAATAGGCTTTT AAT AAAACCCTACTTTAAAGTGGGG TTTCATCTTAACCAA TERM 277 480212 - 480256 + T 95 -13.9 -2.95073 | opp_overlap 480210 480224 480240, overlap 480211 480235 GAAATAAAAATATTT CCTACTTTAAAATAGGCTTTT AAT AAAACCCTACTTTAAAGTGGG GTTTCATCTTAACCA TERM 278 480257 - 480240 - T 72 -5.5 -4.63486 | opp_overlap 480212 480211 480235, overlap 480224 480210 AGGCTTTTAATAAAA CCCTACT TTAA AGTGGGG TTTCATCTTAACCAA NSE_0550 480502 - 480332 - | hypothetical protein TERM 279 480796 - 480768 - g 71 -3.1 -5.00616 | opp_overlap 480769, overlap 480769 CCCTTTTGGAAAAAA CGCTTGATGCTTT CCC AAAACTTCAGGCA CTTTTTATTACTCTA NSE_0551 480515 - 481075 + | major surface protein TERM 280 481885 - 481871 - g 70 -3.6 -4.81083 | TTGAACGAGCAAAAA TTACTT TCA AAGCAA AGGCACCGTTTCAGA TERM 281 482288 - 482272 - g 78 -7.3 -4.42386 | GCGCTACGCACAAAA CTACGCA GAT TGCATAG AAAGGCAAAACTCGG TERM 282 482692 - 482669 - g 74 -4.5 -4.77698 | gap 1, opp_overlap 482680, overlap 482673 TAATAGCAAAACAAA GGAACGGCCC AGTTG GGACCG-CCC TACTTTTTTTCGATC TERM 283 482689 - 482673 - g 70 -7.2 -3.82857 | opp_overlap 482680, overlap 482669 AGCAAAACAAAGGAA CGGCCC AGTTG GGACCG CCCTACTTTTTTTCG TERM 284 482680 - 482695 + G 87 -4.6 -5.47821 | opp_overlap 482673 482669 CAAAGGAACGGCCCA GTTGGG ACCG CCCTAC TTTTTTTCGATCAGT dnaB 481270 - 482754 + | replicative DNA helicase NSE_0554 483344 - 482826 - | HK97 family phage prohead protease NSE_0555 483598 - 483485 - | hypothetical protein rluC 484559 - 483642 - | ribosomal large subunit pseudouridine synthase C NSE_0557 484653 - 484534 - | hypothetical protein trxB 485629 - 484685 - | thioredoxin-disulfide reductase NSE_0559 486238 - 485636 - | anti-oxidant AhpCTSA family protein TERM 285 486350 - 486340 - R 72 -5.4 -4.68424 | TAAGCGATCTAAAAA CACA AAC TGTG CTCGAACTTTTAGTC ndk 486811 - 486392 - | nucleoside diphosphate kinase TERM 286 486440 - 486425 - G 75 -3.3 -5.1675 | GCACCGACTAAAAAA GAATG CAATTT CATTC TTAGCATTCTCTTCG TERM 287 487153 - 487137 - H 87 -8.1 -4.72631 | opp_overlap 487137 ATTAACGGAACAAAA GGAAATT GAT AATTTCC TACTTACGTTATTTT TERM 288 488341 - 488330 - g 70 -5.8 -4.3208 | opp_overlap 488330 TTTGACAAGCTAAAA GCTC CAGT GAGC TTTACCGTTGCTTCG NSE_0561 487205 - 488716 + | MviN family membrane protein NSE_0562 488975 - 488865 - | hypothetical protein NSE_0563 488998 - 490425 + | NADH-ubiquinone/plastoquinone oxidoreductase family protein NSE_0564 490534 - 491160 + | hypothetical protein NSE_0565 491685 - 491173 - | hypothetical protein nuoD 492917 - 491751 - | NADH dehydrogenase subunit D NSE_0568 493598 - 493452 - | hypothetical protein serS 494922 - 493675 - | seryl-tRNA synthetase TERM 289 494101 - 494085 - G 74 -6.5 -4.42386 | opp_overlap 494085 CCGTTACCGACAAAA GCTCGAC CTT GCCGAAC TGATGTTGCCTTATT miaA 496057 - 495140 - | tRNA delta(2)-isopentenylpyrophosphate transferase NSE_0571 496367 - 496071 - | hypothetical protein NSE_0572 496793 - 498628 + | CcmF/CcyK/CcsA family cytochrome c biogenesis protein NSE_0573 499701 - 498625 - | hypothetical protein TERM 290 499386 - 499374 - G 71 -4.1 -4.75472 | TGGACACCAATAAAA GAGCT GCG AACTC AACAAAGGCCCAGAC ruvA 500346 - 500927 + | holliday junction DNA helicase RuvA TERM 291 501347 - 501337 - g 75 -3.2 -5.24531 | ACTCCGCACAAAAAA GGAA TGA CTCC CTTGATCACGTACTT ruvB 501204 - 502199 + | Holliday junction DNA helicase B NSE_0576 502415 - 502182 - | hypothetical protein NSE_0577 502361 - 502465 + | hypothetical protein kgd 505179 - 502462 - | alpha-ketoglutarate decarboxylase TERM 292 504933 - 504944 + g 71 -3 -4.9792 | TTCGGTATGCGTCCT TCAA ATCT TTGA TTTTTATATCAAGTA NSE_0579 505951 - 505364 - | Sua5/YciO/YrdC/YwlC family protein NSE_0580 506742 - 505948 - | metallo-beta-lactamase family protein TERM 293 506173 - 506160 - G 80 -3.8 -5.30348 | ACTCAATAATAAAAA CCTC TAGCTC GAGG GACTTCATAATATCA NSE_0581 506942 - 506739 - | hypothetical protein rpsD 507905 - 507288 - | ribosomal protein S4 NSE_0584 508090 - 508188 + | hypothetical protein NSE_0585 508265 - 508801 + | putative cell division protein NSE_0586 508902 - 509063 + | hypothetical protein folE 509597 - 509055 - | GTP cyclohydrolase I atpG 510390 - 509581 - | ATP synthase F1, gamma subunit NSE_0589 510437 - 510613 + | hypothetical protein NSE_0590 511711 - 510863 - | putative UDP-N-acetylenolpyruvoylglucosamine reductase TERM 294 511328 - 511318 - G 74 -6.8 -4.2828 | opp_overlap 511317 TTGCAGCTACTAAAA GGTC TGA GACC CTCTGATCATAAACA NSE_0591 511807 - 513279 + | hypothetical protein glpX 514326 - 513388 - | fructose 1,6-bisphosphatase II TERM 295 514006 - 513979 - G 71 -9.2 -3.01726 | gap 1, overlap 513978 CTTTTCCATATAAAC GTCCGG-AGCAGA AAT TATGCTTCCGGAC TCACCAAAGCCAAGT NSE_0593 514529 - 514395 - | hypothetical protein topA 517156 - 514673 - | DNA topoisomerase I TERM 296 515206 - 515230 + g 93 -12.3 -3.16981 | opp_overlap 515208, overlap 515197 CCTTGTGGAGGCTAA TATCCTGAGCA ATT TGCTTAGGATA TTCAGTATCATTATC NSE_0595 517355 - 517194 - | hypothetical protein NSE_0596 518708 - 517410 - | hypothetical protein TERM 297 518417 - 518384 - G 77 -3.8 -5.20606 | overlap 518385 518408 AAAGATCAAGAAAAA GGTCCCTGCTTCGT TCATCT ACAATGCAGAGACT GCACATTAACTGGTT NSE_0597 518832 - 518969 + | hypothetical protein NSE_0598 519703 - 519074 - | O-methyltransferase family protein TERM 298 519358 - 519338 - G 89 -10.5 -4.07437 | opp_overlap 519337 519338 AAAAGGACCAAAGAA GCTAAGCTC CGA GAGCTTAAC CTTTGCATCACCTGT NSE_0599 519959 - 520057 + | hypothetical protein acnA 520109 - 522826 + | aconitate hydratase 1 NSE_0601 523976 - 523005 - | hypothetical protein TERM 299 523538 - 523521 - G 71 -2 -5.16237 | AAGTGCATCAAAAAA CTCGTT TGCCAG AACAAG CAGTTTACCGTTCGG NSE_0602 524221 - 524120 - | hypothetical protein TERM 300 524192 - 524180 - G 100 -7.7 -5.25893 | ACACAGACCAAAAAA GGACT CGC AGTCC GTAAAACATGATGAT NSE_0603 526873 - 524240 - | putative valyl-tRNA synthetase TERM 301 526503 - 526515 + g 77 -4.9 -5.00616 | CTATTAAAAAGATCT TTGAA TTC TTCAA TTTTTTCCGCCGAAA prfB 527159 - 528257 + | peptide chain release factor 2, programmed frameshift TERM 302 528641 - 528629 - g 71 -4.9 -4.6265 | ACAAGAAGCAGAAAA TTCAT TCA ATGAA GGGTTGAATTCTGCA NSE_0605 528480 - 529865 + | hypothetical protein NSE_0606 529974 - 529846 - | hypothetical protein TERM 303 532087 - 532067 - g 70 -2.5 -5.05782 | AGGCAGTTGAAAAAA GTAAGACAG AAC CTACCCCAC GAGAAGCGATGATGG NSE_0607 530071 - 532332 + | hypothetical protein NSE_0608 532335 - 532442 + | hypothetical protein TERM 304 533774 - 533759 - gf 93 -4.7 -5.72207 | overlap 533771 CCTAAAGCAAAAAAA GCGAT AGATCA ATCGC AAGAATATGCGAAAC mutL 532652 - 534610 + | MutL/HexB family DNA mismatch repair protein TERM 305 534648 - 534624 - gT 85 -4.4 -5.52909 | gap 1, opp_overlap 534628, overlap 534626 534628 GAACACCCAAAAAAA CT-TAGCAGAC GATC ATCTGCTATAG TGACGCAAGCGCAGA NSE_0610 534585 - 534707 + | hypothetical protein NSE_0611 534890 - 534762 - | hypothetical protein bioB 535863 - 534862 - | biotin synthase TERM 306 535440 - 535403 - GH 73 -5.7 -4.56597 | gap 1, opp_overlap 535412, overlap 535405 535412 TTGTGGTTGTAAAAA TCCAAACCAGCTGCTTTC AGG GAAA-CAGCTTGTTCGTA AGAGAGAAGGCCCAG bioF 536418 - 537599 + | 8-amino-7-oxononanoate synthase NSE_0614 537596 - 538243 + | hypothetical protein bioC 539107 - 538355 - | biotin biosynthesis protein BioC NSE_0616 539303 - 539139 - | hypothetical protein TERM 307 539988 - 539975 - g 80 -3.9 -5.26119 | TTGGGAAAAAGAAAA TAACA AAAT TGTTA TCGAGGGTGCTGGCG bioD 539613 - 540362 + | dethiobiotin synthase TERM 308 541889 - 541864 - g 82 -10.5 -3.64103 | opp_overlap 541859 GAGGCACACTGCAAA GTAATGGAGCT AATT AGCTCCATTGC AGGCTCTTTTACCTA bioA 540562 - 541905 + | adenosylmethionine-8-amino-7-oxononanoate aminotransferase NSE_0620 542305 - 542535 + | hypothetical protein TERM 309 543356 - 543346 - g 87 -5.4 -5.4505 | opp_overlap 543351 543355, overlap 543349 GCTTGGAATAAAAAA GGAT GCG ATCC CAGGTAGACTAAATG NSE_0621 542756 - 543523 + | cytochrome c oxidase, subunit II TERM 310 544249 - 544260 + G 70 -5.8 -4.40963 | overlap 544246 TTGAAGTCGCAGGTG GTGG TGAT CCAC TTCTTTTTCAACACT TERM 311 544430 - 544448 + G 74 -6.7 -4.28713 | CATAATCGGTTGTTT CGTGTGG GCTCA CCACATG TTTATTACTGGTATT TERM 312 544725 - 544747 + G 79 -8.4 -4.24075 | GTGATGTCGATCGCA GCGCTGTTTG TTG TATACAGCGC TTTCTATTACTGGAT ctaD 543552 - 545111 + | cytochrome c oxidase, subunit I cyoE 545121 - 546029 + | protoheme IX farnesyltransferase petA 546044 - 546565 + | ubiquinol-cytochrome c reductase, iron-sulfur subunit TERM 313 547303 - 547313 + G 71 -3.2 -4.99056 | CTAAGGACTTTGTAA CAGT TGT GCTG TTTTTCCTTGTATTC petB 546558 - 547790 + | ubiquinol-cytochrome c reductase, cytochrome b TERM 314 547952 - 547932 - g 75 -8.3 -3.86897 | GGTACCTTTGATAAA CAGGCCA TAAAGCG TGGCCTG AAAGTCTATCAACAG TERM 315 548006 - 548026 + G 72 -7.5 -4.07568 | TAATAGAATATCGTT CCGCCATCT TCT AGGTGCCGG TTTTACGCCCGAAGA petC 547800 - 548570 + | ubiquinol-cytochrome c reductase, cytochrome c1 TERM 316 548891 - 548868 - g 93 -2.4 -6.34616 | opp_overlap 548868 TTAAAATAAAAAAAA TTGGGATTGA TGAG TCAAACCAAA TAATTTCAATCTCAC TERM 317 549908 - 549897 - g 70 -5.8 -4.36127 | overlap 549900 GCGAAGAATTCAAAA GGAC AGGT GTCC TGAGAAATTCATTAA secD 548627 - 550135 + | protein-export membrane protein SecD ubiG 551112 - 550420 - | 3-demethylubiquinone-9 3-methyltransferase TERM 318 550725 - 550704 - G 70 -5.9 -4.25104 | opp_overlap 550703 CTCCTGGGAGCAAAA TTTCTGCAC AAAG GTGCATAAA CTCCTTGAGATTATC fabH 552591 - 551656 - | 3-oxoacyl-(acyl-carrier-protein) synthase III NSE_0631 552756 - 552631 - | hypothetical protein plsX 554043 - 553012 - | fatty acid/phospholipid synthesis protein PlsX rpmF 554280 - 554089 - | ribosomal protein L32 NSE_0634 554463 - 554332 - | hypothetical protein NSE_0635 557177 - 554526 - | hypothetical protein TERM 319 557350 - 557330 - R 70 -4.7 -4.64598 | opp_overlap 557349, overlap 557336 557340 TAACTATTTTAAAAA CCAAAAGGA ACC TCCTCCTAG AGGGACCCCCTCATG nuoE 557965 - 557420 - | NADH dehydrogenase subunit E TERM 320 557970 - 557959 - G 85 -2.2 -5.79588 | GCAAAACTAAAAAAA CCTG CAAG CAAG TATGGCAAGGAAATT NSE_0637 559326 - 557950 - | putative ubiquinone biosynthesis protein NSE_0638 559592 - 560170 + | hypothetical protein NSE_0639 560234 - 560359 + | hypothetical protein hup 560508 - 560789 + | DNA-binding protein HU NSE_0641 560830 - 561567 + | hypothetical protein TERM 321 561711 - 561689 - T 78 -11.2 -2.87253 | overlap 561686 CACAAGGGATAAGCA GGAGGGGCCC AGA GTACCCCTCC CAACAAGCAATTAGA groEL 563368 - 561722 - | 60 kDa chaperonin groES 563664 - 563368 - | 10 kDa chaperonin NSE_0644 564755 - 563811 - | hypothetical protein NSE_0645 566539 - 564755 - | rotamase family protein TERM 322 565483 - 565513 + gH 73 -8.4 -3.64984 | opp_overlap 565482 565483 565509, overlap 565482 565484 GGAGCTCATTTAAAT TTTTCTCTTTCTCC TCT GGAGAAACAGAAAC TATTTTCACAACTGT TERM 323 565484 - 565512 + gH 86 -11.9 -2.78508 | opp_overlap 565483 565482 565509, overlap 565483 565482 GAGCTCATTTAAATT TTTCTCTTTCTCC TCT GGAGAAACAGAAA CTATTTTCACAACTG NSE_0646 566524 - 567702 + | polyA polymerase family protein NSE_0647 568637 - 567927 - | hypothetical protein NSE_0648 568321 - 568704 + | hypothetical protein TERM 324 568885 - 568869 - TR 84 -2.3 -5.73672 | AAATAAGTAAAAAAA TTGCA ACGCACA TGCAA CAGCAGAGAATCTGC TERM 325 568902 - 568886 - TR 80 -10.9 -3.14522 | overlap 568896 GCAACGCACATGCAA CAGCAGA GAA TCTGCTG CGCAGAAGGAAACTG TERM 326 568908 - 568896 - TR 70 -7.7 -3.60348 | overlap 568886 TGCAACAGCAGAGAA TCTGC TGC GCAGA AGGAAACTGAAGTAG ribB 569749 - 569117 - | 3,4-dihydroxy-2-butanone 4-phosphate synthase NSE_0650 570007 - 572436 + | putative cell division protein FtsK NSE_0651 573027 - 572581 - | putative lipoprotein NSE_0652 573682 - 573849 + | hypothetical protein NSE_0653 573905 - 574333 + | hypothetical protein NSE_0654 574575 - 574330 - | hypothetical protein TERM 327 574570 - 574588 + g 100 -8.8 -5.10461 | TGCTTTTACTGCCCT GCTCACAC CTT GTGTGTGC TTTTTATTGCATCAC NSE_0655 574647 - 574877 + | hypothetical protein TERM 328 574991 - 574978 - f 79 -3.9 -5.37593 | TGGCAAATGAAAAAA TAACT AAGT AGTTA ACACCTTATCATTCA TERM 329 575408 - 575382 - g 75 -5.8 -4.61231 | CTATACCTGCAAAAA GTTAGAAGTGCA CTG CGCCCTACTAAC CCTTTTGGACCTTTT NSE_0656 575151 - 575558 + | hypothetical protein NSE_0657 575864 - 575971 + | hypothetical protein NSE_0658 576598 - 575957 - | acetyltransferase NSE_0659 577163 - 576750 - | hypothetical protein TERM 330 577380 - 577358 - R 72 -9.2 -2.73243 | overlap 577357 ATTGATCTGGTAAAT GGGAGAGATA AGC TATCTCTCAC TGCGTACAAATAAAA NSE_0660 577534 - 577418 - | hypothetical protein NSE_0661 581383 - 577652 - | FAD-binding domain-containing protein TERM 331 581216 - 581233 + gH 75 -8.5 -3.70902 | TTTTTCTTCAAATGT CTCTTCT ATAC AGAAGAG TTTCACTATAAAGGC NSE_0662 581296 - 581496 + | hypothetical protein fabZ 582111 - 581656 - | beta-hydroxyacyl-[acyl carrier protein] dehydratase FabZ TERM 332 582070 - 582042 - G 89 -6.7 -5.40072 | opp_overlap 582045 582047, overlap 582047 CTTCGTCCAAAAAAA GGAAAGGATCCCT ATG AGGGATCCTCTTT TTTATCTCCTCACGA TERM 333 582045 - 582067 + g 100 -10.6 -5.39721 | opp_overlap 582042 582047, overlap 582047 CGTCCAAAAAAAGGA AAGGATCCCT ATG AGGGATCCTC TTTTTTATCTCCTCA TERM 334 582065 - 582047 - G 100 -13.2 -4.5187 | opp_overlap 582045 582047, overlap 582042 TCCAAAAAAAGGAAA GGATCCCT ATG AGGGATCC TCTTTTTTATCTCCT TERM 335 582047 - 582065 + g 100 -13.2 -4.32846 | opp_overlap 582047 582042, overlap 582045 TCCAAAAAAAGGAAA GGATCCCT ATG AGGGATCC TCTTTTTTATCTCCT NSE_0664 582741 - 582118 - | hypothetical protein TERM 336 582740 - 582725 - G 82 -3.2 -5.5112 | GCTACGAATAAAAAA TGAAGC TTAC GCATCA CACAAGGGACATTTA fabG 583671 - 582931 - | 3-oxoacyl-[acyl-carrier protein] reductase NSE_0666 583717 - 583833 + | hypothetical protein rnhA 584556 - 584101 - | ribonuclease HI NSE_0668 585708 - 584986 - | hypothetical protein greA 586241 - 585762 - | transcription elongation factor GreA TERM 337 586383 - 586395 + GH 79 -7.7 -4.24123 | GATGGTACACAAGTT TCCCT ACC AGGGA TTTTGCCATTGTTAG NSE_0670 586222 - 586410 + | hypothetical protein TERM 338 586933 - 586916 - g 100 -2.7 -6.53504 | overlap 586918 586919 GATACAAAAAAAAAA TCCGTCA TTAT TGACAAA ACTGAGACCATACAC TERM 339 587284 - 587270 - g 86 -2.8 -5.77988 | overlap 587271 587276 ACAGAGATAAAAAAA GGAAAG CTT CTTTCT GCAACCTTTGAGAAA lpdA-2 586511 - 587917 + | dihydrolipoamide dehydrogenase NSE_0672 588491 - 587934 - | hypothetical protein typA 590389 - 588599 - | GTP-binding protein TypA NSE_0674 590546 - 590382 - | hypothetical protein TERM 340 590947 - 590923 - g 85 -9.3 -4.17789 | CAACTACAAAGCAAA CAGACCTCCAG TTC CTGGAAACCTG ACCCCACAGTTCGCT TERM 341 591269 - 591252 - g 76 -9.9 -3.24633 | opp_overlap 591252, overlap 591250 ACACATCTGATAATA TTCCAGG AGTG CCTGGAA TTGGTGTAAAAACAG TERM 342 591252 - 591269 + G 76 -9.9 -3.25823 | opp_overlap 591252 591250 ACACATCTGATAATA TTCCAGG AGTG CCTGGAA TTGGTGTAAAAACAG polA 590702 - 593191 + | DNA polymerase I NSE_0676 594057 - 593233 - | cytochrome c oxidase, subunit III rpoC 598220 - 594093 - | DNA-directed RNA polymerase, beta' subunit rpoB 602351 - 598275 - | DNA-directed RNA polymerase, beta subunit TERM 343 601897 - 601887 - G 79 -6.8 -4.68593 | overlap 601889 601890 GTCATTATCGAAAAA CACC CCA GGTG CACGATGCATCTGAG TERM 344 601913 - 601889 - G 72 -7.1 -3.95883 | overlap 601887 601890 CATTATCGAAAAACA CCCCAGGTGCA CGA TGCATCTGAGA TACGACAACCCTTTC rplL 602801 - 602388 - | ribosomal protein L7/L12 rplJ 603367 - 602843 - | 50S ribosomal protein L10 rplA 604008 - 603379 - | ribosomal protein L1 rplK 604432 - 604010 - | ribosomal protein L11 NSE_0683 604991 - 604461 - | putative transcription termination/antitermination factor NusG secE 605178 - 604996 - | preprotein translocase, SecE subunit TERM 345 605103 - 605093 - G 71 -3.2 -4.92239 | overlap 605100 GCAAAAAGGGAAAAA GAGA CAA CCTC CCTCCTAGAAGGCCA tuf 606554 - 605262 - | elongation factor Tu fusA 608663 - 606585 - | translation elongation factor G rpsG 609199 - 608672 - | 30S ribosomal protein S7 rpsL 609579 - 609211 - | 30S ribosomal protein S12 recG 611673 - 609646 - | ATP-dependent DNA helicase RecG nuoM 611895 - 613256 + | NADH dehydrogenase I, M subunit nuoN 613253 - 614629 + | NADH dehydrogenase I, N subunit NSE_0693 614856 - 615536 + | biotin--acetyl-CoA-carboxylase ligase NSE_0694 615713 - 616483 + | putative geranyltranstransferase NSE_0696 617827 - 617009 - | glutamine synthetase domain-containing protein TERM 346 618406 - 618420 + G 71 -4.2 -4.76191 | opp_overlap 618406 TTGTACTTCCCAAGA TCATCG CAG CGCTGA TTTCTTTTCCTGTGT TERM 347 618565 - 618581 + G 79 -3 -5.25805 | AGGATCTTATTGCTG GAATGA CAAAA TCGTTC TTTTTTGGCTTTATT NSE_0697 617994 - 618746 + | putative ABC transporter, permease protein NSE_0698 618736 - 619464 + | ABC transporter, ATP-binding protein TERM 348 619539 - 619525 - g 73 -7.2 -4.12532 | TCTCTCAGATATAAA CTTTTC CGT GAAAAG TGGCCAGATTTTGTG NSE_0699 619457 - 620374 + | ABC transporter, ATP-binding protein NSE_0700 620931 - 620512 - | hypothetical protein rnhB 621093 - 621680 + | ribonuclease HII NSE_0702 621682 - 621807 + | hypothetical protein NSE_0703 621872 - 622339 + | hypothetical protein TERM 349 622642 - 622657 + G 73 -9 -3.57144 | overlap 622637 GCCGTGCAAATTCTG GGCATC CTGG GATGCC TTTGGGAATGGCAGA TERM 350 623487 - 623499 + G 74 -7.7 -3.98173 | opp_overlap 623487 623486 CTCGCTTACAATAAT CTTCC TGG GGAAG TTTCATTAGCTTTGG TERM 351 623813 - 623789 - g 70 -5.1 -4.4715 | overlap 623790 GCTCAACTCAGAAAA CTCAATGCA AGATTTA TGCATTGAA CCCCAAAAATATCAT NSE_0704 622578 - 624836 + | transketolase, insertion NSE_0705 624915 - 625007 + | hypothetical protein NSE_0706 625046 - 626422 + | NADH-ubiquinone/plastoquinone oxidoreductase family protein gidA 628297 - 626414 - | tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA TERM 352 626883 - 626901 + g 81 -7.4 -4.58466 | opp_overlap 626887 TCGTAAGGAGTGGTT GAAAGCTC ATT GAGCTTAC TTTTGTAGTTATGAA TERM 353 627020 - 627000 - G 76 -7.6 -4.14739 | TCAGTGAGTCGAAAA TCCGCGTT ATCAG AACGCAGA TTAAGCCGATACTCT NSE_0708 628917 - 628297 - | hypothetical protein NSE_0709 629009 - 629338 + | hypothetical protein TERM 354 629798 - 629785 - g 82 -2.4 -5.61881 | CTCGAAAAACAAAAA GTAC GTCTTA GTAC TTAGCCATTCTCCCG NSE_0710 629429 - 629944 + | hypothetical protein NSE_0711 630340 - 630876 + | putative nicotinate (nicotinamide) nucleotide adenylyltransferase TERM 355 631253 - 631242 - f 72 -2.2 -5.22039 | GCTAAACTGAAAAAA GGAA AAAA CTCC TATGGGTTCATTCTA TERM 356 632198 - 632187 - g 86 -3 -5.68438 | opp_overlap 632187 CGACCAAAGAAAAAA CTTA GGAT TAAG TATACTTACCAAAGA recJ 631369 - 633102 + | single-stranded-DNA-specific exonuclease RecJ NSE_0713 633470 - 633366 - | hypothetical protein TERM 357 633928 - 633944 + G 70 -5.1 -4.45544 | GGATGCGCATCTTAT TCCTGAG CAA CTCAAGA TTTTCGTTCATAGAG nuoF 633479 - 634720 + | NADH dehydrogenase I subunit F folC 636109 - 634781 - | folylpolyglutamate synthase TERM 358 634877 - 634835 - G 89 -7.2 -4.91852 | GTCACGAAAAAGAAA TAGTGATCCACATAACAAAA TCT TCTTGCTATCTGAATCTCTA CTGAGAATATGATAA NSE_0716 636138 - 636353 + | hypothetical protein trmE 638161 - 636509 - | tRNA modification GTPase TrmE NSE_0718 640399 - 638165 - | OMP85 family outer membrane protein TERM 359 638982 - 638968 - G 71 -2.1 -5.24129 | gap 1 GGTTCTTATAAAAAA CAGACG CACC CG-CTG TGATAAATGTGTCGA TERM 360 639155 - 639175 + g 76 -6.8 -4.43681 | overlap 639157 ACCACCGCTCAGATT TAGCGTCC CAGTA GGACGCTC TTTTACTCTTACCTC TERM 361 639157 - 639173 + g 81 -9.4 -3.81853 | overlap 639155 CACCGCTCAGATTTA GCGTCC CAGTA GGACGC TCTTTTACTCTTACC NSE_0719 641503 - 640403 - | putative membrane-associated zinc metalloprotease NSE_0720 642550 - 641711 - | putative 4-diphosphocytidyl-2C-methyl-D-erythritol kinase TERM 362 642001 - 642011 + g 71 -4 -4.87786 | AAAAAATACTTCTTC TTTC GCG GAAA TTTTTATAAACTTCA gyrB 644929 - 642578 - | DNA gyrase, B subunit NSE_0722 645178 - 645080 - | hypothetical protein bcp 645288 - 645776 + | bacterioferritin comigratory protein NSE_0724 645945 - 647351 + | putative sodium:proline symporter TERM 363 648994 - 648982 - g 77 -6.3 -4.68908 | TTTAGTGAAAATAAA CTACA CGA TGTAG ACCTTACGAAAGCTG NSE_0725 647332 - 649038 + | pentapeptide repeat-containing protein TERM 364 649643 - 649633 - g 76 -6.8 -4.41241 | overlap 649634 GAAACTTGTACAAAA CCAC CGA GTGG TAGAATGCTTTGTAG gmk 649064 - 649684 + | guanylate kinase NSE_0727 649923 - 649735 - | hypothetical protein NSE_0728 650205 - 650089 - | hypothetical protein NSE_0729 651071 - 650226 - | hypothetical protein gltA 651157 - 652353 + | citrate synthase NSE_0731 652538 - 652317 - | hypothetical protein NSE_0732 653439 - 652516 - | hypothetical protein eno 654680 - 653439 - | enolase TERM 365 654335 - 654310 - G 76 -10.5 -3.03159 | GGAACGCCCCTAACA CTTGCATTTGC CTTC GCAACTGCAAG AGAAACAGCCACGAT ppa 654760 - 655278 + | inorganic pyrophosphatase NSE_0735 656363 - 655545 - | hypothetical protein TERM 366 655977 - 655957 - G 70 -2.6 -4.98255 | gap 1, overlap 655972 CCGGAATGATAAAAA TTACGG-GC AACG ACACCGTAA CGCATCGCACGGTAC TERM 367 656084 - 656070 - G 78 -4.3 -5.20216 | opp_overlap 656070, overlap 656062 TACATGATCAAAAAA GAACT GTACT AGTTC TTTTTCGCTGTAGCA TERM 368 656070 - 656084 + g 71 -5 -4.70659 | opp_overlap 656070 656062 TACATGATCAAAAAA GAACTG TAC TAGTTC TTTTTCGCTGTAGCA NSE_0736 656461 - 656369 - | hypothetical protein gltX-2 657706 - 656477 - | glutamyl-tRNA synthetase NSE_0738 658377 - 657802 - | hypothetical protein virD4 660496 - 658571 - | type IV secretion system protein VirD4 virB11 661522 - 660527 - | type IV secretion system protein VirB11 virB10 662901 - 661528 - | type IV secretion system protein VirB10 virB9-2 663630 - 662908 - | type IV secretion system protein VirB9 virB8-2 664294 - 663617 - | type IV secretion system protein VirB8 NSE_0744 664511 - 664338 - | hypothetical protein TERM 369 664568 - 664558 - R 72 -5.4 -4.67234 | ACTTAATTTCAAAAA GGTT AAA AACC TAAGCGATAAAGATA ribA 665629 - 664568 - | GTP cyclohydrolase II TERM 370 666016 - 666000 - g 71 -3 -5.01732 | gap 1 AATTCGGCGAAAAAA GGGTCGT GGAT AC-ACCC ATAAGCGAACATGCT TERM 371 666466 - 666481 + G 82 -7.6 -4.41177 | opp_overlap 666466 CAGAAATGGTACAGA TGTCAC GATA GTGACA TTTTCGATTTGTGTA NSE_0746 665846 - 666844 + | pyruvate dehydrogenase subunit beta NSE_0747 667134 - 667003 - | hypothetical protein NSE_0748 667199 - 667462 + | hypothetical protein NSE_0749 667645 - 667968 + | hypothetical protein TERM 372 668344 - 668325 - g 70 -5.1 -4.4773 | CGACATTAAGCAAAA TGAAAAG CTTGTC CTTTTCA ATAACCAGGAAGAAA NSE_0751 668086 - 669387 + | putative trigger factor clpP 669394 - 670029 + | ATP-dependent Clp protease, proteolytic subunit ClpP TERM 373 670087 - 670102 + G 71 -6.8 -4.12532 | overlap 670099 AGTACGGAAACTTGT TGCGGG TATG TCCGCA TTTATCTGTGACAGA clpX 670013 - 671215 + | ATP-dependent protease ATP-binding subunit NSE_0754 671406 - 671212 - | hypothetical protein TERM 374 671460 - 671442 - H 100 -2.4 -6.32216 | ATAGATAAAAAAAAA GCCCTA GGCCCGA TAAGGC AGGGGTAATACTATG NSE_0755 672044 - 672343 + | hypothetical protein glyS 674428 - 672338 - | glycyl-tRNA synthetase, beta subunit TERM 375 672965 - 672982 + g 74 -4.9 -4.84146 | gap 1, opp_overlap 672965, overlap 672971 TTTCATTAAGAAGAC CTGGAGTG GAA CA-TCCAG TTTATTTTCTATGAT glyQ 675338 - 674421 - | glycyl-tRNA synthetase subunit alpha TERM 376 674755 - 674745 - G 73 -5.4 -4.63486 | ATCTTTGGAATAAAA TAGG CTT CCTA CGTTGTCAACATCTT NSE_0758 676567 - 675374 - | aspartate aminotransferase ssb 676858 - 677313 + | single-strand binding protein NSE_0760 678044 - 677454 - | hypothetical protein NSE_0761 678704 - 678060 - | putative transaldolase atpC 679043 - 678708 - | ATP synthase F1, epsilon subunit atpD 680468 - 679044 - | F0F1 ATP synthase subunit beta NSE_0764 680636 - 680526 - | hypothetical protein NSE_0765 683121 - 680608 - | hypothetical protein TERM 377 680783 - 680794 + gr 72 -2.2 -5.2015 | GGGTGCAAGCCCGCT TGTG CTAA CGCA TTTTTCTGTTCTTCA virB4-1 685364 - 683112 - | type IV secretion system protein VirB4 NSE_0767 685494 - 685354 - | hypothetical protein NSE_0768 685817 - 685452 - | putative type IV secretion system protein VirB2 TERM 378 685546 - 685526 - GR 71 -8.3 -3.43965 | opp_overlap 685523 AAATCCAACCCATAA TCGTCTGTG CAC CAAAGACGA ACATTATTCCTGCTG TERM 379 685880 - 685866 - R 70 -7.2 -3.80573 | TCTATGATCATGAAA TAAGCA AAA TGCTTA AAATAGTCACAAGCC NSE_0769 686071 - 685895 - | hypothetical protein virB2 686376 - 686029 - | type IV secretion system protein VirB2 TERM 380 686129 - 686109 - GRH 71 -8.3 -3.4285 | opp_overlap 686106 GTATCCAACCCATAA TCGTCTGTG CAC CAAAGACGA ACATTATTCCTGCTG lepA 688352 - 686562 - | GTP-binding protein LepA NSE_0772 688308 - 688430 + | hypothetical protein lysK 690052 - 688535 - | lysyl-tRNA synthetase NSE_0774 690116 - 690000 - | hypothetical protein TERM 381 690132 - 690148 + r 74 -5.2 -4.88918 | CTAGTGAGAACACTC TTCCAA ATTAG TTGGAA TTTTGTTTGAAGTAA NSE_0775 690738 - 690580 - | hypothetical protein NSE_0776 691009 - 690830 - | hypothetical protein TERM 382 690995 - 691042 + g 81 -11.4 -2.75074 | gap 1, overlap 690992 CTTGTATGGGCCCAA CTGCTGAGCTGCCACTTGTACTG TTA CAGTGGAAGTGGCGGC-CAGTAC TGATGTTCAGCTAAA moeB 691900 - 691163 - | molybdopterin biosynthesis protein MoeB TERM 383 691509 - 691491 - G 83 -9 -4.16182 | CCAGCAGAAATCAAA GCTTTTTT TTG AAAAAAGC ACAACTCATTGAGAT NSE_0778 692043 - 691927 - | hypothetical protein NSE_0779 692117 - 693118 + | pyridine nucleotide-disulphide oxidoreductase family protein NSE_0780 693273 - 693181 - | hypothetical protein hisS 694546 - 693305 - | histidyl-tRNA synthetase NSE_0782 694814 - 694527 - | BolA family protein NSE_0783 696144 - 694897 - | major facilitator family transporter TERM 384 696197 - 696183 - H 79 -7.2 -4.66057 | ATAGATAAACTAAAA TCTAGA CTT TCTAGA TATAGCATATTACCA TERM 385 697099 - 697117 + G 70 -5.3 -4.44548 | overlap 697093 AGAGTATTTGGTCGG CAGAGCA GAGCG TGTTCTG TTTTCGTTCCGTATA lepB 696464 - 697222 + | signal peptidase I NSE_0785 698634 - 697345 - | MiaB family tRNA modification protein TERM 386 697601 - 697623 + g 70 -2.6 -5.00616 | ACTCCGTCTACTTGA GGCATTAAGG CAG CCTTTGTTCC TTTTTTAGGCGAAAA TERM 387 698698 - 698683 - g 82 -7.6 -4.43844 | TGATCATGTACAAAA TCCTGT TTTT ACAGGA ATACTCAACTTTGAC NSE_0786 698658 - 698771 + | hypothetical protein TERM 388 699482 - 699462 - g 70 -7.5 -3.7948 | overlap 699460 AACTAGAGCAAAATA CCCCAACAA GAA TTGGCGGGG AGATATTGCAGAAAA TERM 389 699609 - 699572 - g 75 -5.8 -4.64076 | gap 2 AATCAAATCATAAAA GGCG-AAG-AAAAACTTG CTGA CATGTTTTTACTTACGCC ATACGAAGCAGCGAT NSE_0787 698840 - 700207 + | hypothetical protein TERM 390 700458 - 700448 - g 71 -4 -4.86731 | TCTTCGCAAACAAAA TAGA GAA TCTA AACCTCTTATTTGAA NSE_0788 700222 - 700758 + | hypothetical protein TERM 391 701167 - 701140 - g 73 -8.4 -3.61103 | gap 1, opp_overlap 701140 701143, overlap 701141 GAAGCGCACGCTAAA CCCGTCCCGCTTG CAT CAAGCGGG-CAGC ACTTTGGGTTCTTGT TERM 392 701166 - 701141 - g 83 -11.9 -2.7634 | gap 1, opp_overlap 701140 701143, overlap 701140 AAGCGCACGCTAAAC CCGTCCCGCTTG CAT CAAGCGGG-CAG CACTTTGGGTTCTTG TERM 393 701322 - 701307 - g 100 -7.6 -5.5353 | GATAGCAATAAAAAA CCTTAG TGGG CTAAGG AGAAAATCACAGATT NSE_0789 700921 - 701742 + | hypothetical protein hemH 702737 - 701760 - | ferrochelatase TERM 394 702213 - 702203 - G 79 -6.8 -4.6313 | CTGAAAATAAAATAA TGGG TTT CCCA AAAGCACATGCCTCG TERM 395 702318 - 702299 - G 72 -7.9 -3.77437 | overlap 702294 702289 702296 AGTAACAACACACAA CTTGCGT TGGAAT ACGCAAG ACCTTTAAACACTGT TERM 396 702482 - 702470 - G 75 -3.3 -5.16841 | overlap 702472 GCATAGCAACAAAAA CCTCA TAT TGGGG ACCAAGTAAGTCCCC NSE_0791 703850 - 702873 - | hypothetical protein TERM 397 703631 - 703613 - G 71 -9.6 -2.99947 | overlap 703617 TAACGCCCATACACA CCAACACT TCC AGCGTTGG GACGAAATTGTTATA rpsT 704185 - 703922 - | ribosomal protein S20 TERM 398 704794 - 704805 + G 71 -4.4 -4.84359 | AGAAAGTTGCTGCTC TTGG GCTG CCAA TTTTTCTGGACCTCA pyrF 704640 - 705326 + | orotidine 5'-phosphate decarboxylase NSE_0794 706045 - 705371 - | TerC family membrane protein NSE_0795 706427 - 706239 - | hypothetical protein pccB 706523 - 708079 + | propionyl-CoA carboxylase, beta subunit NSE_0797 708193 - 708750 + | hypothetical protein NSE_0798 708928 - 710238 + | outer membrane efflux protein ispG 711578 - 710334 - | 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase TERM 399 711053 - 711063 + g 75 -3.2 -5.1925 | CTCCATTATAGGAGC TGGG TTT CTCA TTTTTTGCATTATCA NSE_0800 712349 - 711630 - | inositol monophosphatase family protein NSE_0801 712446 - 712276 - | hypothetical protein pdhA 713434 - 712430 - | pyruvate dehydrogenase complex, E1 component, pyruvate dehydrogenase alpha subunit TERM 400 712831 - 712819 - G 70 -7.7 -3.60296 | CACCCCTATTGGAAA GCGAA GAA TTCGC GCACACGCTCTCAAC TERM 401 714694 - 714707 + r 71 -4.5 -4.7254 | TTCCACTTACGTGTT CGCAG AGCC CTGTG TTTTTAGTAAACAGT TERM 402 715912 - 715924 + r 83 -9.1 -4.2354 | AGGATCTATTTCACT CCCCT AAC AGGGG TTCTTTTCACCTTTC NSE_0805 716678 - 716445 - | hypothetical protein TERM 403 717014 - 717026 + G 70 -7.7 -3.63435 | TGGAGAGGTAAGAGT TACCG AAG CGGTA TTGCTGTTTTTAATT ubiA 716757 - 717599 + | 4-hydroxybenzoate octaprenyltransferase TERM 404 718008 - 718035 + G 77 -10.6 -3.22298 | opp_overlap 718007 718008 TTAATGTTTCAAAAC CCCTTCCTTTGG TCTA CTATAGGAAGGG TTACTGCTCAATCAG NSE_0807 717596 - 718054 + | flavin reductase family protein NSE_0808 718156 - 718923 + | putative phosphate ABC transporter, ATP-binding protein NSE_0810 719535 - 719425 - | hypothetical protein smpB 719985 - 719542 - | SsrA-binding protein TERM 405 722253 - 722241 - g 82 -4.9 -5.33848 | overlap 722234 ACTACAAGGAAAAAA TGAAA TTT TTTCA GACGTAACAGCAATA NSE_0812 720232 - 723072 + | putative phosphoribosylformylglycinamidine synthase II TERM 406 723328 - 723338 + T 71 -4 -4.89852 | TGCCGCATCTTTGTA TAGA AGA TCTA TTTTTCTAGGTGTCA NSE_0813 723540 - 723307 - | hypothetical protein NSE_0814 724906 - 723632 - | putative permease TERM 407 724013 - 724003 - G 70 -5.4 -4.57569 | CTACGGCTCCAAAAA CAAG CCC CTTG ATAATCCCATACCTA TERM 408 724679 - 724657 - G 84 -2.7 -5.66684 | overlap 724659 724661 CAATTGAGAAAAAAA CACACTGCT GTAAT AGCAGTATC CACCCTCTTTTTTGC TERM 409 724677 - 724659 - G 70 -5.3 -4.46105 | overlap 724657 724661 ATTGAGAAAAAAACA CACTGCT GTAAT AGCAGTA TCCACCCTCTTTTTT pccA 727002 - 725044 - | propionyl-CoA carboxylase, alpha subunit prs 727891 - 726974 - | ribose-phosphate pyrophosphokinase TERM 410 727511 - 727497 - GR 71 -6.4 -4.16842 | overlap 727498 GGGATCTCGAAGAAA CCCTCA AAT TGAGGA AAGTGTACATCTAAG TERM 411 728017 - 727999 - R 70 -3 -5.09762 | overlap 728002 728004 728005 ACGGCAACACAAAAA GAACACCG TAC CGACGTAC GAACCTGAAAAGATA NSE_0817 728599 - 728057 - | NifU-like domain-containing protein TERM 412 728979 - 728967 - g 80 -9.1 -3.93401 | GGCAGAAATCAATAA GGCGT ACC ACGCC CTGGTACAGAAAGTA NSE_0818 728680 - 729066 + | DnaJ domain-containing protein NSE_0819 729085 - 729207 + | hypothetical protein NSE_0820 729277 - 729759 + | NADH dehydrogenase subunit I TERM 413 730413 - 730400 - g 79 -3.1 -5.41143 | CATTTTGTAAAAAAA GACTT CATC AAGCC CGGAGCGACTGTTAT folD 729743 - 730639 + | FolD bifunctional protein TERM 414 731513 - 731495 - g 70 -5.3 -4.48299 | TTACATCGAAACAAA GAAGATC AAGCG GATCCTC TAGTGATGGCTCTAT NSE_0823 730933 - 731625 + | hypothetical protein NSE_0824 733027 - 731744 - | Ser/Thr protein phosphatase family protein TERM 415 733427 - 733407 - H 70 -8.3 -3.30124 | GTTCAGTTGGTAGAA CGCAACCTT GCC AAGGTTGAG GCCGAGGGTTCGAGT TERM 416 733630 - 733606 - g 78 -2.3 -5.48163 | gap 1 AAACAAACGAAAAAA TAGTCATATG GTGCAG CA-ATGACTA TCTAGGAATGGGACA hemA 733470 - 734690 + | 5-aminolevulinate synthase rpsU 734913 - 734719 - | ribosomal protein S21 NSE_0828 735397 - 734990 - | putative cytochrome c-type biogenesis protein CcmE NSE_0829 737027 - 735399 - | metallo-beta-lactamase family protein TERM 417 736363 - 736352 - G 78 -2.2 -5.4505 | TGTTCGAAGAAAAAA GCGT CACA ACAC ACGCTCCACTGGCAC NSE_0831 737364 - 737245 - | hypothetical protein NSE_0830 737127 - 737333 + | hypothetical protein miaB 737392 - 738807 + | tRNA-i(6)A37 modification enzyme MiaB TERM 418 738915 - 738898 - T 78 -9.9 -3.30007 | AATACCTTGGTAGAA CGTGCAT CGAA ATGCACG TCGGAATAAGACTTG TERM 419 739198 - 739212 + T 72 -8.6 -3.28712 | opp_overlap 739210 AGAGGCTGAAGGCGG CGGTTT GCT AAACCG TTATACGACCAAAAG NSE_0834 739529 - 739344 - | hypothetical protein NSE_0835 739597 - 739737 + | hypothetical protein NSE_0837 741593 - 741300 - | hypothetical protein TERM 420 741657 - 741646 - R 71 -4.4 -4.79657 | ACAACATCAAGAAAA GAAG GATA CTTC TCAAGATTTTCTTTA NSE_0838 741923 - 741687 - | hypothetical protein rpsI 742457 - 742020 - | ribosomal protein S9 rplM 742918 - 742460 - | 50S ribosomal protein L13 NSE_0841 743622 - 742951 - | CvpA family protein NSE_0842 746190 - 743623 - | TRAP transporter, 4TM/12TM fusion protein sodB 746843 - 746226 - | superoxide dismutase, Fe NSE_0844 747025 - 747615 + | glycoprotease family protein NSE_0845 747634 - 748776 + | branched-chain amino acid transporter TERM 421 749547 - 749559 + G 79 -3.3 -5.37593 | opp_overlap 749547 AATACAGCTACAAAA GCGCT GTC AGAGC TTTTTTCGTTTAAGA NSE_0846 748965 - 750164 + | hypothetical protein NSE_0847 751187 - 750174 - | mechanosensitive ion channel family protein TERM 422 750215 - 750229 + g 73 -2.8 -5.11112 | CTGTTTCTGGATACA TGGGTT TGA GATCCA TTTTTCTTGCGGTTT TERM 423 750230 - 750262 + g 72 -7.9 -3.84712 | TGGGTTTGAGATCCA TTTTTCTTGCGGTTT CGA AGATTGCAAGAAGAA TTTCCTGTCGAGTTG TERM 424 752161 - 752134 - g 82 -7.8 -4.51238 | TCCACAAAACAGAAA TACATACTTCCA GGAC CGGATGTATGTA GAAAGGCAAGGCAGG NSE_0849 751546 - 752280 + | hypothetical protein TERM 425 752877 - 752894 + G 70 -7.1 -3.84185 | opp_overlap 752876 752879 TTACAAATACTAAGG GAGAAAT TCGG ATTTCTC TTATGTTTCGATGAA argD 752265 - 753434 + | bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein NSE_0851 754156 - 753497 - | peptidyl-prolyl cis-trans isomerase, cyclophilin-type purC 755017 - 754295 - | phosphoribosylaminoimidazole-succinocarboxamide synthase ribE-2 755331 - 755933 + | riboflavin synthase subunit alpha lgt 756036 - 756836 + | prolipoprotein diacylglyceryl transferase NSE_0855 757856 - 756879 - | putative cytochrome oxidase assembly protein TERM 426 757047 - 757034 - G 82 -3.1 -5.52986 | ATGCTACCAAAAAAA CTCTC GCAC GAAAG GCTCTATCATAAAAG TERM 427 757666 - 757677 + g 71 -3 -5.01535 | AAGTGACGTACTTTA TACT CAGG AGTA TTTTTGTACTTATCA rpmH 758080 - 758214 + | ribosomal protein L34 rnpA 758205 - 758546 + | ribonuclease P protein component NSE_0858 758552 - 758860 + | hypothetical protein NSE_0859 762322 - 758873 - | VirB6 family type IV secretion system protein TERM 428 759092 - 759071 - GT 100 -10.2 -4.51378 | opp_overlap 759066, overlap 759066 AGTGACATTAGAAAA CGCAGAAG CAGTGT CTTCTGCG TTAGAAGCTTCAGCT TERM 429 761183 - 761169 - GT 81 -4.2 -5.39721 | TTATTATAGAAAAAA TCCCAG CTA CTCGGA GAAATTAGCTGAAGA NSE_0860 765761 - 762252 - | VirB6 family type IV secretion system protein TERM 430 765100 - 765078 - GR 83 -10.6 -3.73336 | overlap 765062 765079 AGCTGAATTCAACAA CTCCCCCTTC AAA GAAGGAGGAA GAAACACTTGCAACT TERM 431 765099 - 765079 - GR 86 -11.9 -2.8352 | overlap 765062 765078 GCTGAATTCAACAAC TCCCCCTTC AAA GAAGGAGGA AGAAACACTTGCAAC NSE_0861 768291 - 765772 - | VirB6 family type IV secretion system protein TERM 432 766251 - 766261 + g 84 -5.4 -5.27923 | CGGGGGTCACGGCTA CTTG TGC CAAG TTTTTTATCCAGTTA TERM 433 767604 - 767588 - G 72 -7.3 -4.04474 | ACAGCTCTACACAAA TCGACTG TGC CAATCGA TCGGTCTATACCCCC virB6 770929 - 768308 - | type IV secretion system protein VirB6 TERM 434 769003 - 768991 - G 70 -2.7 -4.97824 | AAAATCCAAACAAAA CTATA GGA TACAG CGAGTAAGCCATCAC TERM 435 770277 - 770289 + g 80 -6.3 -4.77165 | ATGTCTATAAGGGTA TCCAA ACT TTGGA TTTTGTTCTCACCAC virB4-2 773337 - 770926 - | type IV secretion system protein VirB4 TERM 436 772789 - 772807 + g 73 -7.5 -4.16443 | overlap 772792 GGGCGTATTGTTCCT CAAGCTT ACCAA AAGCTTG TTTGTCATTTCCTCT TERM 437 772900 - 772914 + g 75 -2.1 -5.37345 | TTTTCTATAAAGATC GTTGA AGAGC TCGAC TTTTTTGTCATTACG virB3 773636 - 773340 - | type IV secretion system protein VirB3 TERM 438 773433 - 773420 - G 74 -4.5 -4.91109 | TCCTTACTAGAAAAA GCTCC AAAA AGAGC GGCTCATTGAAGCAG NSE_0865 775732 - 773969 - | putative ABC transporter, ATP-binding protein/permease protein NSE_0866 776952 - 775861 - | patatin-like phospholipase family protein NSE_0867 777077 - 776970 - | hypothetical protein NSE_0868 777188 - 777087 - | hypothetical protein NSE_0869 777334 - 778200 + | hypothetical protein NSE_0870 778226 - 778372 + | hypothetical protein NSE_0871 778305 - 779162 + | alpha/beta fold family hydrolase TERM 439 779180 - 779159 - f 72 -2.3 -5.26119 | gap 1, overlap 779164 TTCGGAAAAACAAAA TTGAAGCATC ACG GATGCG-CAA AACCTGGAAATCGTC NSE_0872 779288 - 780073 + | hypothetical protein TERM 440 780272 - 780284 + F 78 -3.4 -5.38321 | TATGCACTTGAATTC CAAG TAAAT CTTG TTTTTTATACTATTT NSE_0873 780397 - 781311 + | hypothetical protein TERM 441 781363 - 781330 - f 74 -9.7 -2.72511 | opp_overlap 781331 781335, overlap 781329 CTTATTCGCTCAAAC TGGAAGATGGATTTC CGAT GAAATCTATCTTCCT TAATGTGAAATTATA TERM 442 781331 - 781362 + F 100 -15.4 -3.28261 | opp_overlap 781330 781329, overlap 781335 TTATTCGCTCAAACT GGAAGATGGATTTC CGAT GAAATCTATCTTCC TTAATGTGAAATTAT TERM 443 781335 - 781358 + F 74 -9 -3.43071 | opp_overlap 781330 781329, overlap 781331 TCGCTCAAACTGGAA GATGGATTTC CGAT GAAATCTATC TTCCTTAATGTGAAA NSE_0874 781561 - 781671 + | hypothetical protein NSE_0875 781677 - 782417 + | putative outer surface protein TERM 444 782601 - 782618 + G 71 -7 -4.08948 | AGGGGTCTTTTTCCT GCCAGA AGTGTA TCTGGC TTGTTTGTGAGGTTC secG 782478 - 782801 + | preprotein translocase, SecG subunit TERM 445 783466 - 783452 - g 77 -8.6 -4.03093 | overlap 783443 CACAATCAGCACAAA TGTCTG CTG CAGACA AAAGGAAGATAGCTC pyrG 782794 - 784440 + | CTP synthetase TERM 446 785701 - 785738 + G 87 -6.5 -5.14563 | overlap 785700 TGAACGTACTCACCC TCTGTTCGA-GAGTTCC ATGCCA GGGACTCATCGA-CAGA TTTTTTCCTAGGGCG TERM 447 785880 - 785868 - g 73 -9.1 -3.53881 | overlap 785866 AGTAGAAATACAATA CGCAG TAC CTGCG ACAAGGCAATAGCTG TERM 448 786363 - 786339 - g 73 -2.9 -5.1485 | gap 1 GAAGCAATACAAAAA GCAC-TAACC GGCAGT GGTCATGTGC AATTCCTTGCTTCAC TERM 449 786552 - 786539 - g 72 -8.1 -3.86015 | overlap 786526 GAGTGTGCCTACAAA GGCAC CACA GTGCC AATCAACACGGACAA NSE_0879 784737 - 786728 + | hypothetical protein NSE_0880 787162 - 786737 - | putative N utilization substance protein B maf 787781 - 787152 - | maf protein infA 788096 - 787815 - | translation initiation factor IF-1 NSE_0883 788261 - 788148 - | hypothetical protein TERM 450 788457 - 788467 + H 71 -4.6 -4.75289 | GTTATCATACCTCAC CGTC TCT GGCG TTTTCTATTATGGTA NSE_0884 788477 - 789007 + | hypothetical protein TERM 451 789277 - 789290 + GF 71 -6.7 -4.19238 | AGATCGAATCATGTC CATGC GGCT GCATG TTTTCGGCTTAGGAA NSE_0885 789029 - 790765 + | glutathione-regulated potassium-efflux system protein NSE_0886 790677 - 790865 + | hypothetical protein guaA 792387 - 790828 - | bifunctional GMP synthase/glutamine amidotransferase protein TERM 452 791022 - 791012 - G 73 -8.2 -3.62695 | overlap 791010 791013 TCGTGAGAAACAATA GCGC GTA GCGC ACAAACATAGTTATA TERM 453 791744 - 791766 + g 76 -2.6 -5.29445 | overlap 791748 AGAACACCTGCATCA CCAGTGGTAG CAA CTACCATGCG TTTTTCTTCTTCGGA NSE_0888 793259 - 792519 - | ATP-binding Mrp/Nbp35 family protein NSE_0889 793656 - 794282 + | putative peptidoglycan-associated lipoprotein NSE_0890 794298 - 795143 + | hypothetical protein gpmI 795212 - 796684 + | phosphoglyceromutase NSE_0892 797439 - 796699 - | hypothetical protein TERM 454 798993 - 798980 - g 73 -3.8 -5.05577 | AAACTAAAGGAAAAA CCTG AAACAG CAGG TAGAATCTTACATTC metG 797690 - 799201 + | methionyl-tRNA synthetase trxA 799545 - 799237 - | thioredoxin 1 rplS 799917 - 799555 - | 50S ribosomal protein L19 trmD 800618 - 799941 - | tRNA (guanine-N1)-methyltransferase rpmA 800882 - 800634 - | 50S ribosomal protein L27 rplU 801230 - 800931 - | ribosomal protein L21 TERM 455 801099 - 801085 - G 73 -5.6 -4.44797 | overlap 801086 GTACCAACACCAAAA TGAGGC CTG GCCTCC TCGTCAAGAACGCAC TERM 456 801098 - 801086 - G 71 -9.1 -3.26155 | overlap 801085 TACCAACACCAAAAT GAGGC CTG GCCTC CTCGTCAAGAACGCA recR 801932 - 801342 - | recombination protein RecR NSE_0900 801997 - 802689 + | hypothetical protein NSE_0901 802961 - 803734 + | disulfide oxidoreductase NSE_0903 804473 - 804282 - | hypothetical protein NSE_0902 804130 - 804462 + | hypothetical protein TERM 457 804504 - 804468 - Gf 70 -8.1 -3.3614 | overlap 804464 804463 804470 804473 804493 AAAACAATAATTCAA TAGCACTGACTGTACTT GAA AAATACAGTCAGGACTG AAAAGTAACAGGTCA TERM 458 804502 - 804470 - Gf 79 -10.7 -3.22425 | overlap 804464 804468 804463 804473 804493 AACAATAATTCAATA GCACTGACTGTACTT GAA AAATACAGTCAGGAC TGAAAAGTAACAGGT TERM 459 804499 - 804473 - fH 93 -13.2 -2.78906 | overlap 804464 804470 804468 804463 804493 AATAATTCAATAGCA CTGACTGTACTT GAA AAATACAGTCAG GACTGAAAAGTAACA NSE_0904 804704 - 805501 + | strain-specific surface antigen NSE_0906 806150 - 806019 - | hypothetical protein NSE_0907 806451 - 806356 - | hypothetical protein TERM 460 806602 - 806581 - H 71 -3.9 -4.89519 | opp_overlap 806599 ATAATAGAAAAGAAA TATAAAATT TAGT AATTCTATA CATTATAATTTTATA NSE_0908 806668 - 807666 + | strain-specific surface antigen NSE_0909 807793 - 807635 - | hypothetical protein TERM 461 808171 - 808158 - g 72 -8.1 -3.84587 | ATGACGCAAACACAA GCAGC TGAA GCTGC AAACTATCCTTTTTG NSE_0910 808080 - 809132 + | translation-associated GTPase TERM 462 809304 - 809294 - T 71 -8.2 -3.43785 | CAGGACATGAAGGAA CGGC ATC GCCG ATCGAAACTAAAGAT NSE_0912 809580 - 809434 - | hypothetical protein NSE_0913 810904 - 809558 - | M16 family peptidase TERM 463 810122 - 810103 - G 70 -3.6 -4.86731 | opp_overlap 810106, overlap 810106 TGTGCCCAAACAAAA TAACATTC TGTG GAATGTTT TTTTCAACCGAAATA TERM 464 810106 - 810119 + g 84 -5.3 -5.40072 | opp_overlap 810103 810106 GCCCAAACAAAATAA CATTC TGTG GAATG TTTTTTTCAACCGAA TERM 465 810119 - 810106 - G 70 -5.3 -4.54026 | opp_overlap 810106, overlap 810103 GCCCAAACAAAATAA CATTC TGTG GAATG TTTTTTTCAACCGAA NSE_0914 812220 - 810907 - | M16 family peptidase TERM 466 811134 - 811147 + g 95 -8.1 -5.02074 | CAGCTTCAATATCGT CGGCA CCAA TGCCG TTTTTTACAACCTCC lspA 812787 - 812233 - | signal peptidase II TERM 467 812312 - 812298 - G 87 -6.4 -5.19251 | overlap 812300 CAACACCAAGAAAAA TCGCTG CAT CAGCAA CATTAAAAACCGGCC NSE_0916 814144 - 812789 - | putative carboxypeptidase TERM 468 814854 - 814840 - g 73 -7.2 -4.20084 | AGCAGTGATGGAAAA CCTTTT GAT AAAAGG ACGCTTTCCTCTAAG NSE_0917 814327 - 815094 + | hypothetical protein rnc 815801 - 815133 - | ribonuclease III NSE_0919 816124 - 815792 - | iojap-related protein NSE_0920 816272 - 816126 - | hypothetical protein TERM 469 816358 - 816385 + r 72 -5 -4.76213 | gap 1 GCTGAATTACGCTGT CAGTGTTAAG-GT ATT ACACTTAGTACTG TTTTGTTCAATTTAT mraW 817389 - 816499 - | S-adenosyl-methyltransferase MraW TERM 470 816769 - 816753 - G 70 -5.9 -4.28994 | opp_overlap 816753 CATCATTTATGAAAA TTCTCAG GGC CTGAAAA GTCTTTGTCGCCGGA NSE_0922 818173 - 817520 - | putative tRNA (guanine-N(7)-)-methyltransferase TERM 471 817855 - 817843 - G 70 -7.7 -3.65991 | ACTTTTCCAACAGAA GACGA ACA TCGTC ATTCCAAATTAGAAC NSE_0923 818927 - 818268 - | putative competence protein ComL TERM 472 819347 - 819362 + G 75 -3.3 -5.14163 | overlap 819342 AAATGAACGGTATAC CTGTA GCCAGG TACAG TTTTTGTTCATCCAT purD 818998 - 820263 + | phosphoribosylamine--glycine ligase NSE_0925 821106 - 820417 - | hypothetical protein TERM 473 821019 - 821009 - G 78 -2.4 -5.42259 | GCACCTCTAAAAAAA GGAG CTA CACC ACCATCAGACAAAGC NSE_0926 821948 - 821205 - | hypothetical protein TERM 474 822005 - 821993 - R 84 -7.7 -4.73108 | TGCAGAAAACCAAAA CCAAG CTA CTTGG AACCTTGCCTTACGT NSE_0927 822132 - 821998 - | hypothetical protein TERM 475 822086 - 822096 + g 71 -2.4 -5.10497 | GCAACGTACGAATTG CGGG CAT CACG TTTTTTCGCTGACTT NSE_0928 822360 - 822163 - | hypothetical protein dapA 822373 - 823299 + | dihydrodipicolinate synthase TERM 476 823367 - 823389 + T 74 -9.2 -3.20573 | overlap 823365 CAGAGCATTCACATC TATCCGGCTT TCT AAGCCAGATA TCTTCCTCTACCTGC NSE_0930 823553 - 823434 - | hypothetical protein NSE_0931 823728 - 823618 - | hypothetical protein TERM 477 824269 - 824285 + GH 71 -8.1 -3.42884 | opp_overlap 824269 824264, overlap 824267 ATCCCAGAAACACAA TTTTCCA GGT TGGAAAA TATTGTGTTGGGTGT TERM 478 824285 - 824269 - gH 77 -8.1 -3.90097 | opp_overlap 824267 824269, overlap 824264 ATCCCAGAAACACAA TTTTCCA GGT TGGAAAA TATTGTGTTGGGTGT NSE_0932 824044 - 824565 + | cytochrome b561 family protein NSE_0933 824531 - 824869 + | hypothetical protein NSE_0934 824862 - 825506 + | HAD family hydrolase NSE_0935 825577 - 826344 + | uracil-DNA glycosylase TERM 479 826512 - 826538 + G 71 -6.6 -4.14739 | opp_overlap 826512 826510 826505 826515 826527, overlap 826515 TGGAGAAACTTAATA GGAGGATATTCA AAA TGAATAGCCTAC TTTTCAAGTACCTAA TERM 480 826601 - 826574 - g 78 -2.1 -5.4505 | gap 1, opp_overlap 826575, overlap 826575 TCCGCTAATAAAAAA CTTTTCCGAGGA ACAAA TCCT-GGAAAAT CTCGTGCAGGTCGTA TERM 481 826875 - 826855 - g 76 -2.5 -5.26316 | overlap 826856 GTATGGGATAAAAAA TGGACCATT CAT AATGTTCCC ACTGTTTGGTGCGAC NSE_0936 826472 - 827101 + | putative vacJ lipoprotein NSE_0937 827085 - 827693 + | hypothetical protein NSE_0938 828050 - 827748 - | hypothetical protein TERM 482 828324 - 828305 - H 74 -5 -4.86033 | overlap 828312 AAAGCCCCACAAAAA CAACTTAC AAGC GCAAGCTG GTCTGGGATTGCTAA TERM 483 828489 - 828476 - H 70 -2.5 -5.12987 | CTAAAGAAAAAGAAA TTAAA ATAA TTTAA GCTCACTAACCTACA NSE_0939 828564 - 830048 + | HlyD family type I secretion membrane fusion protein NSE_0940 830186 - 831325 + | AraM domain-containing protein NSE_0941 831330 - 831578 + | hypothetical protein NSE_0942 832273 - 831656 - | putative phosphatidate cytidylyltransferase TERM 484 832234 - 832222 - G 84 -2.6 -5.72616 | AGGCACACAAAAAAA GCAG TACTG CCGC AGAGATAACCCTGGC NSE_0943 832480 - 832379 - | hypothetical protein uppS 833162 - 832470 - | undecaprenyl diphosphate synthase frr 833716 - 833159 - | ribosome recycling factor pyrH 834430 - 833729 - | uridylate kinase TERM 485 834194 - 834180 - G 71 -10 -2.63112 | opp_overlap 834176 AAATTGTTTATAGCA CCTTGC AGA GCAAGG GCATTAATAACAGTT tsf 835309 - 834437 - | translation elongation factor Ts TERM 486 834556 - 834574 + g 80 -3.8 -5.28826 | opp_overlap 834556, overlap 834558 GATCTGAAAATAGAG GCTGTTCT AGG AGGACAAC TTTTTTATAGAATTT rpsB 836228 - 835332 - | ribosomal protein S2 TERM 487 835376 - 835397 + g 100 -9.5 -4.61873 | overlap 835389 CATCCACATTATCTT GTTTTTCCG ATTT CGGAGAAAC TTTTCGTTTCTGCAA NSE_0949 836454 - 836299 - | hypothetical protein ubiE 836412 - 837104 + | ubiquinone/menaquinone biosynthesis methlytransferase UbiE NSE_0951 837101 - 837220 + | hypothetical protein NSE_0952 837267 - 837428 + | hypothetical protein pdhC 837687 - 838898 + | pyruvate dehydrogenase complex, E2 component, dihydrolipoamide acetyltransferase NSE_0954 839095 - 839865 + | putative phosphomethylpyrimidine kinase ruvC 840374 - 839874 - | crossover junction endodeoxyribonuclease RuvC mdh 841411 - 840464 - | malate dehydrogenase, NAD-dependent TERM 488 841770 - 841749 - H 76 -3.7 -5.31877 | overlap 841753 ACCTAGGAGAAAAAA TCTACATGC AAGA GCACGCAAA GATACTTCTTTTGCC dut 841754 - 842203 + | deoxyuridine 5'triphosphate nucleotidohydrolase TERM 489 843513 - 843527 + G 79 -8.6 -4.09739 | TGAGACCTACTCTGA TGTCTC TCA GAGACA TTTTGGCAGCCTTCA gyrA 842498 - 845107 + | DNA gyrase, A subunit era 846230 - 845304 - | GTP-binding protein Era fabD 847226 - 846297 - | malonyl CoA-acyl carrier protein transacylase TERM 490 847324 - 847341 + r 70 -7.1 -3.72051 | overlap 847327 CTTTTTCTGCCTCCC GAATCTT TACC AAGATTC TTTGAGCTTCTTCCA dnaG 849043 - 847304 - | DNA primase TERM 491 847788 - 847767 - G 73 -5.7 -4.4727 | overlap 847768 TTAACATCTACAAAA TGCGTGGCG TCTT CGCCACCCC TATACGCAGGAATAA TERM 492 847787 - 847768 - G 74 -9.2 -3.27639 | overlap 847767 TAACATCTACAAAAT GCGTGGCG TCTT CGCCACCC CTATACGCAGGAATA TERM 493 848741 - 848753 + g 89 -6.3 -5.28561 | opp_overlap 848740 848741, overlap 848748 TACTTGGATAAAACT TTCTG TCC CAGAA TTTTTCTTGTCTATT TERM 494 849085 - 849073 - R 100 -7.7 -5.4833 | opp_overlap 849072 849073 CGACCTAAGAAAAAA GAGGA AGT TCCTC ATATTCTATCACCAA acpS 849449 - 849084 - | holo-(acyl-carrier protein) synthase TERM 495 850051 - 850033 - g 74 -10.4 -2.70932 | overlap 850009 850036 TGCTCTTCTGAAGCA CAAGGAAA AAC TTTCCTTG CAGATTAGGATAGCA NSE_0963 849584 - 850786 + | hypothetical protein dcd 851497 - 850940 - | deoxycytidine triphosphate deaminase TERM 496 851572 - 851590 + H 79 -4.6 -5.19275 | TCCATACAAACTGGC TTTATGTG ACT CACACAAA TTTTATTTTGTAGGT purK 851895 - 852944 + | phosphoribosylaminoimidazole carboxylase, ATPase subunit NSE_0966 853659 - 853024 - | hypothetical protein TERM 497 854499 - 854477 - g 78 -9.4 -3.69434 | GGAAGGAAGGCGAAA TTTTAAATAG AAA CTATTTAAAA CACGAAAATATACCA TERM 498 854945 - 854933 - g 93 -2.7 -5.96219 | opp_overlap 854939, overlap 854939 CAGTTAGAAAAAAAA TAGAA AGA CTCTA CAGTGTCGTTTCAAT NSE_0967 853738 - 855135 + | phage uncharacterized protein TERM 499 855160 - 855183 + F 73 -6.8 -4.21438 | opp_overlap 855165, overlap 855164 GTTGATAAGTACGTG TAAAACCTGT TTAT ACAGGGTTTA TTGTTTATTGAAATC TERM 500 855178 - 855165 - f 71 -6.7 -4.12902 | opp_overlap 855164 855160 TAAGTACGTGTAAAA CCTGT TTAT ACAGG GTTTATTGTTTATTG hemE 855542 - 856516 + | uroporphyrinogen decarboxylase nadA 856566 - 857513 + | quinolinate synthetase TERM 501 857537 - 857518 - T 72 -9.4 -2.85706 | opp_overlap 857518, overlap 857515 857520 TGAATAAATAGAGGA CACAAATC CAAT GATTTGTG TTTATTGTTTAAATA TERM 502 857518 - 857537 + T 88 -9.4 -4.58585 | opp_overlap 857518 857515 857520 TGAATAAATAGAGGA CACAAATC CAAT GATTTGTG TTTATTGTTTAAATA coaD 858024 - 857539 - | pantetheine-phosphate adenylyltransferase NSE_0971 858852 - 858028 - | hypothetical protein TERM 503 858174 - 858197 + g 82 -6.9 -4.86731 | ACCCGCTGCCAATCT TTATCTCAA TCCGTT TTGAGATAA TTTTATTTCCCCGGA